SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 47461 47486 chr2L 52566 52591 jockey 17 5104 4.5 3.5 4.0 3.4 5130 chr2L 47461 intron Cda5 - chr2L 50026 intron Cda5 - chr2L 52591 intron Cda5 - chr2L_17_50001 chr2L_50001 RAL-365 2 chr2L 89717 89740 chr2L 89794 89817 9 77 2.5 1.5 2.0 3.0 100 chr2L 89717 intergenic not near genes chr2L 89767 intergenic not near genes chr2L 89817 intergenic not near genes chr2L_9_85001 chr2L_85001 RAL-365 3 chr2L 179464 179490 chr2L 179545 179573 4 82 0.0 0.5 0.2 3.3 109 chr2L 179464 intron spen + chr2L 179518 intron spen + chr2L 179573 intron spen + chr2L_4_175001 chr2L_175001 RAL-365 4 chr2L 263303 263313 chr2L 263449 263459 5 146 0.0 1.5 0.8 2.8 156 chr2L 263303 intron,3` UTR CG3645 -,CG17075 - chr2L 263381 intron,3` UTR CG3645 -,CG17075 - chr2L 263459 intron,3` UTR CG3645 -,CG17075 - chr2L_5_260001 chr2L_260001 RAL-365 5 chr2L 297696 297716 chr2L 297796 297816 5 100 0.0 1.5 0.8 2.8 120 chr2L 297696 intergenic Pi3K21B +,Hop + chr2L 297756 intergenic Pi3K21B +,Hop + chr2L 297816 intergenic Pi3K21B +,Hop + chr2L_5_295001 chr2L_295001 RAL-365 6 chr2L 314133 314153 chr2L 314210 314230 7 77 1.0 0.5 0.8 3.9 97 chr2L 314133 intron Plc21C + chr2L 314182 intron Plc21C + chr2L 314230 intron Plc21C + chr2L_7_310001 chr2L_310001 RAL-365 7 chr2L 323454 323479 chr2L 323532 323557 4 78 1.0 1.0 1.0 2.0 103 chr2L 323454 intron Plc21C + chr2L 323506 intron Plc21C + chr2L 323557 intron Plc21C + chr2L_4_320001 chr2L_320001 RAL-365 8 chr2L 325126 325154 chr2L 325201 325231 9 76 1.5 3.0 2.2 2.8 105 chr2L 325126 intron Plc21C + chr2L 325178 intron Plc21C + chr2L 325231 intron Plc21C + chr2L_9_325001 chr2L_325001 RAL-365 9 chr2L 347886 347909 chr2L 355385 355409 blood 4 7500 2.0 1.5 1.8 1.4 7523 chr2L 347886 3` UTR Plc21C + chr2L 351648 intron Plc21C + chr2L 355409 3` UTR Plc21C + chr2L_4_350001 chr2L_350001 RAL-365 10 chr2L 436873 436905 chr2L 436950 436982 6 77 2.0 3.0 2.5 1.7 109 chr2L 436873 intron ex + chr2L 436928 intron ex + chr2L 436982 intron ex + chr2L_6_435001 chr2L_435001 RAL-365 11 chr2L 509827 509856 chr2L 509972 510001 4 145 1.5 1.0 1.2 1.8 174 chr2L 509827 intron ush + chr2L 509914 intron ush + chr2L 510001 intron ush + chr2L_4_505001 chr2L_505001 RAL-365 12 chr2L 558830 558850 chr2L 559066 559086 6 236 1.0 4.5 2.8 1.6 256 chr2L 558830 intron rempA - chr2L 558958 intron rempA - chr2L 559086 intron rempA - chr2L_6_555001 chr2L_555001 RAL-365 13 chr2L 604018 604040 chr2L 604836 604861 7 820 3.0 0.5 1.8 2.5 843 chr2L 604018 3` UTR CG13689 + chr2L 604440 intergenic CG13689 + chr2L 604861 intergenic CG13689 + chr2L_7_600001 chr2L_600001 RAL-365 14 chr2L 612138 612170 chr2L 612222 612254 5 84 3.0 3.5 3.2 1.2 116 chr2L 612138 intergenic not near genes chr2L 612196 intergenic not near genes chr2L 612254 intergenic not near genes chr2L_5_610001 chr2L_610001 RAL-365 15 chr2L 763595 763624 chr2L 763671 763700 6 75 3.5 0.0 1.8 2.1 105 chr2L 763595 intergenic not near genes chr2L 763648 intergenic not near genes chr2L 763700 intergenic not near genes chr2L_6_760001 chr2L_760001 RAL-365 16 chr2L 770464 770492 chr2L 772245 772266 Bari1 5 1780 2.0 1.0 1.5 2.0 1802 chr2L 770464 intergenic not near genes chr2L 771365 intergenic not near genes chr2L 772266 intergenic CR44614 + chr2L_5_770001 chr2L_770001 RAL-365 17 chr2L 781567 781597 chr2L 781907 781937 9 340 2.0 3.0 2.5 2.6 370 chr2L 781567 exon Gr21a + chr2L 781752 exon Gr21a + chr2L 781937 exon Gr21a + chr2L_9_780001 chr2L_780001 RAL-365 18 chr2L 866711 866740 chr2L 866789 866817 9 78 1.0 2.0 1.5 3.6 106 chr2L 866711 intron aru - chr2L 866764 intron aru - chr2L 866817 intron aru - chr2L_9_865001 chr2L_865001 RAL-365 19 chr2L 898378 898392 chr2L 898452 898467 6 75 1.5 3.5 2.5 1.7 89 chr2L 898378 intergenic Lsp1beta +,CR45348 - chr2L 898422 intergenic Lsp1beta +,CR45348 - chr2L 898467 intergenic Lsp1beta +,CR45348 - chr2L_6_895001 chr2L_895001 RAL-365 20 chr2L 906553 906574 chr2L 906632 906656 8 81 0.0 2.5 1.2 3.6 103 chr2L 906553 intergenic not near genes chr2L 906604 intergenic not near genes chr2L 906656 intergenic not near genes chr2L_8_905001 chr2L_905001 RAL-365 21 chr2L 922465 922641 chr2L 922546 922724 11 81 0.5 1.0 0.8 6.1 259 chr2L 922465 intergenic CG4341 + chr2L 922594 intergenic CG4341 + chr2L 922724 intergenic CG4341 + chr2L_11_920001 chr2L_920001 RAL-365 22 chr2L 931635 931670 chr2L 931713 931749 13 79 1.5 2.5 2.0 4.3 114 chr2L 931635 intron CG4341 + chr2L 931692 intron CG4341 + chr2L 931749 intron CG4341 + chr2L_13_930001 chr2L_930001 RAL-365 23 chr2L 976878 976910 chr2L 984513 984546 roo 9 7636 1.5 1.5 1.5 3.6 7668 chr2L 976878 intergenic not near genes chr2L 980712 intergenic not near genes chr2L 984546 intergenic not near genes chr2L_9_980001 chr2L_980001 RAL-365 24 chr2L 1023016 1023033 chr2L 1023096 1023108 8 79 4.5 5.0 4.8 1.4 92 chr2L 1023016 intron IA-2 - chr2L 1023062 intron IA-2 - chr2L 1023108 intron IA-2 - chr2L_8_1020001 chr2L_1020001 RAL-365 25 chr2L 1035560 1035593 chr2L 1035637 1035670 5 77 2.5 3.0 2.8 1.3 110 chr2L 1035560 intron IA-2 - chr2L 1035615 intron IA-2 - chr2L 1035670 intron IA-2 - chr2L_5_1035001 chr2L_1035001 RAL-365 26 chr2L 1044420 1044440 chr2L 1044542 1044562 7 122 1.5 0.0 0.8 3.9 142 chr2L 1044420 intron IA-2 - chr2L 1044491 intron IA-2 - chr2L 1044562 intron IA-2 - chr2L_7_1040001 chr2L_1040001 RAL-365 27 chr2L 1220127 1220155 chr2L 1227593 1227621 blood 6 7466 3.0 0.5 1.8 2.1 7494 chr2L 1220127 intron CG42329 + chr2L 1223874 intron CG42329 + chr2L 1227621 intron CG42329 + chr2L_6_1220001 chr2L_1220001 RAL-365 28 chr2L 1261144 1261258 chr2L 1261226 1261338 8 81 0.0 0.0 0.0 8.0 194 chr2L 1261144 intron robo3 + chr2L 1261241 intron robo3 + chr2L 1261338 intron robo3 + chr2L_8_1260001 chr2L_1260001 RAL-365 29 chr2L 1322025 1322051 chr2L 1322114 1322134 4 88 1.5 0.5 1.0 2.0 109 chr2L 1322025 intergenic not near genes chr2L 1322080 intergenic not near genes chr2L 1322134 intergenic not near genes chr2L_4_1320001 chr2L_1320001 RAL-365 30 chr2L 1370129 1370162 chr2L 1370209 1370242 5 79 0.5 1.5 1.0 2.5 113 chr2L 1370129 intergenic not near genes chr2L 1370186 intergenic not near genes chr2L 1370242 intergenic not near genes chr2L_5_1370001 chr2L_1370001 RAL-365 31 chr2L 1436627 1436648 chr2L 1436713 1436734 6 86 1.5 3.0 2.2 1.9 107 chr2L 1436627 intergenic not near genes chr2L 1436680 intergenic not near genes chr2L 1436734 intergenic not near genes chr2L_6_1435001 chr2L_1435001 RAL-365 32 chr2L 1570686 1570715 chr2L 1573558 1573587 F-element 5 2872 2.0 2.0 2.0 1.7 2901 chr2L 1570686 intron haf + chr2L 1572136 intron haf + chr2L 1573587 intron haf + chr2L_5_1570001 chr2L_1570001 RAL-365 33 chr2L 1590962 1590978 chr2L 1591035 1591054 10 76 1.0 1.5 1.2 4.5 92 chr2L 1590962 intron haf + chr2L 1591008 intron haf + chr2L 1591054 intron haf + chr2L_10_1590001 chr2L_1590001 RAL-365 34 chr2L 1711358 1711386 chr2L 1711682 1711708 mdg3 10 324 1.5 1.0 1.2 4.5 350 chr2L 1711358 3` UTR,3` UTR mRpL48 +,frtz - chr2L 1711533 3` UTR frtz - chr2L 1711708 3` UTR frtz - chr2L_10_1710001 chr2L_1710001 RAL-365 35 chr2L 1883437 1883445 chr2L 1884017 1884025 4 580 0.5 2.5 1.5 1.6 588 chr2L 1883437 intron CG15358 - chr2L 1883731 intron CG15358 - chr2L 1884025 exon CG15358 - chr2L_4_1880001 chr2L_1880001 RAL-365 36 chr2L 1925493 1925501 chr2L 1925570 1925578 4 77 0.5 2.0 1.2 1.8 85 chr2L 1925493 intron CG7337 + chr2L 1925536 intron CG7337 + chr2L 1925578 intron CG7337 + chr2L_4_1925001 chr2L_1925001 RAL-365 37 chr2L 1999573 1999580 chr2L 1999737 1999744 4 164 2.5 4.0 3.2 1.0 171 chr2L 1999573 intron CG33543 - chr2L 1999658 intron CG33543 - chr2L 1999744 intron CG33543 - chr2L_4_1995001 chr2L_1995001 RAL-365 38 chr2L 2100379 2100392 chr2L 2109528 2109542 roo 8 9150 4.0 2.5 3.2 1.9 9163 chr2L 2100379 intron dpr3 - chr2L 2104960 intron dpr3 - chr2L 2109542 intron dpr3 - chr2L_8_2100001 chr2L_2100001 RAL-365 39 chr2L 2112125 2112145 chr2L 2119787 2119807 opus 4 7662 1.0 4.5 2.8 1.1 7682 chr2L 2112125 intergenic not near genes chr2L 2115966 intergenic not near genes chr2L 2119807 intergenic not near genes chr2L_4_2115001 chr2L_2115001 RAL-365 40 chr2L 2260820 2260830 chr2L 2260905 2260916 4 86 5.0 0.5 2.8 1.1 96 chr2L 2260820 intergenic not near genes chr2L 2260868 intergenic not near genes chr2L 2260916 intergenic not near genes chr2L_4_2260001 chr2L_2260001 RAL-365 41 chr2L 2262307 2262336 chr2L 2262384 2262413 6 77 2.0 0.0 1.0 3.0 106 chr2L 2262307 intergenic not near genes chr2L 2262360 intergenic not near genes chr2L 2262413 intergenic not near genes chr2L_6_2260001 chr2L_2260001 RAL-365 42 chr2L 2291066 2291084 chr2L 2291173 2291189 7 106 2.5 2.5 2.5 2.0 123 chr2L 2291066 intergenic robl22E - chr2L 2291128 intergenic robl22E - chr2L 2291189 intergenic robl22E - chr2L_7_2290001 chr2L_2290001 RAL-365 43 chr2L 2294048 2294075 chr2L 2299250 2299279 copia 5 5204 2.0 2.5 2.2 1.6 5231 chr2L 2294048 intergenic not near genes chr2L 2296664 intergenic not near genes chr2L 2299279 intergenic not near genes chr2L_5_2295001 chr2L_2295001 RAL-365 44 chr2L 2334047 2334061 chr2L 2335104 2335120 4 1058 1.5 1.5 1.5 1.6 1073 chr2L 2334047 intron,intron CG9967 -,eys + chr2L 2334584 intron,intron CG9967 -,eys + chr2L 2335120 intron,intron CG9967 -,eys + chr2L_4_2330001 chr2L_2330001 RAL-365 45 chr2L 2398927 2398959 chr2L 2399004 2399036 5 78 0.0 3.0 1.5 2.0 109 chr2L 2398927 intron VGlut + chr2L 2398982 intron VGlut + chr2L 2399036 intron VGlut + chr2L_5_2395001 chr2L_2395001 RAL-365 46 chr2L 2503715 2503740 chr2L 2504494 2504519 8 779 2.5 2.0 2.2 2.5 804 chr2L 2503715 intergenic not near genes chr2L 2504117 intergenic not near genes chr2L 2504519 intergenic not near genes chr2L_8_2500001 chr2L_2500001 RAL-365 47 chr2L 2547959 2547990 chr2L 2549168 2549198 4 1208 3.0 10.5 6.8 0.5 1239 chr2L 2547959 intergenic not near genes chr2L 2548578 intergenic not near genes chr2L 2549198 intergenic not near genes chr2L_4_2545001 chr2L_2545001 RAL-365 48 chr2L 2557836 2557847 chr2L 2557921 2557932 4 85 0.0 1.5 0.8 2.2 96 chr2L 2557836 intergenic not near genes chr2L 2557884 intergenic not near genes chr2L 2557932 intergenic not near genes chr2L_4_2555001 chr2L_2555001 RAL-365 49 chr2L 2587816 2587847 chr2L 2587895 2587926 9 79 1.0 1.5 1.2 4.1 110 chr2L 2587816 intergenic not near genes chr2L 2587871 intergenic not near genes chr2L 2587926 intergenic not near genes chr2L_9_2585001 chr2L_2585001 RAL-365 50 chr2L 2661193 2661235 chr2L 2663031 2663071 I-element 7 1837 0.5 0.5 0.5 4.7 1878 chr2L 2661193 intergenic not near genes chr2L 2662132 intergenic not near genes chr2L 2663071 intergenic not near genes chr2L_7_2660001 chr2L_2660001 RAL-365 51 chr2L 2698867 2698892 chr2L 2698954 2698979 6 87 0.5 2.5 1.5 2.4 112 chr2L 2698867 intron CG31690 + chr2L 2698923 intron CG31690 + chr2L 2698979 intron CG31690 + chr2L_6_2695001 chr2L_2695001 RAL-365 52 chr2L 2713513 2713543 chr2L 2713612 2713642 7 99 4.5 2.5 3.5 1.6 129 chr2L 2713513 intron CG31690 + chr2L 2713578 intron CG31690 + chr2L 2713642 intron CG31690 + chr2L_7_2710001 chr2L_2710001 RAL-365 53 chr2L 2793942 2793977 chr2L 2794021 2794056 6 80 1.5 1.0 1.2 2.7 114 chr2L 2793942 intron Syt1 - chr2L 2793999 intron Syt1 - chr2L 2794056 intron Syt1 - chr2L_6_2790001 chr2L_2790001 RAL-365 54 chr2L 2895695 2895716 chr2L 2895781 2895802 4 86 0.5 1.5 1.0 2.0 107 chr2L 2895695 intron lilli + chr2L 2895748 intron lilli + chr2L 2895802 intron lilli + chr2L_4_2895001 chr2L_2895001 RAL-365 55 chr2L 2922316 2922349 chr2L 2922418 2922451 6 102 2.0 1.0 1.5 2.4 135 chr2L 2922316 intron lilli + chr2L 2922384 intron lilli + chr2L 2922451 intron lilli + chr2L_6_2920001 chr2L_2920001 RAL-365 56 chr2L 2932466 2932479 chr2L 2932923 2932936 6 457 0.5 2.5 1.5 2.4 470 chr2L 2932466 intron lilli + chr2L 2932701 intron lilli + chr2L 2932936 intron lilli + chr2L_6_2930001 chr2L_2930001 RAL-365 57 chr2L 2937425 2937445 chr2L 2937502 2937522 4 77 1.0 1.5 1.2 1.8 97 chr2L 2937425 intron lilli + chr2L 2937474 intron lilli + chr2L 2937522 intron lilli + chr2L_4_2935001 chr2L_2935001 RAL-365 58 chr2L 3147276 3147308 chr2L 3147353 3147385 8 77 1.5 2.5 2.0 2.7 109 chr2L 3147276 3` UTR Mad - chr2L 3147330 3` UTR Mad - chr2L 3147385 3` UTR Mad - chr2L_8_3145001 chr2L_3145001 RAL-365 59 chr2L 3186479 3186496 chr2L 3186565 3186581 8 85 1.0 2.0 1.5 3.2 102 chr2L 3186479 intron CG34393 - chr2L 3186530 intron CG34393 - chr2L 3186581 intron CG34393 - chr2L_8_3185001 chr2L_3185001 RAL-365 60 chr2L 3251499 3251527 chr2L 3259063 3259092 springer 4 7565 2.0 1.0 1.5 1.6 7593 chr2L 3251499 intergenic not near genes chr2L 3255296 intergenic not near genes chr2L 3259092 intergenic not near genes chr2L_4_3255001 chr2L_3255001 RAL-365 61 chr2L 3291236 3291269 chr2L 3291316 3291349 4 79 1.0 1.5 1.2 1.8 113 chr2L 3291236 intergenic CG9664 - chr2L 3291292 3` UTR CG9664 - chr2L 3291349 3` UTR CG9664 - chr2L_4_3290001 chr2L_3290001 RAL-365 62 chr2L 3388600 3388627 chr2L 3388841 3388868 pogo 6 241 1.5 2.5 2.0 2.0 268 chr2L 3388600 intergenic CG42460 - chr2L 3388734 intergenic CG42460 - chr2L 3388868 intergenic CG42460 -,CR44791 + chr2L_6_3385001 chr2L_3385001 RAL-365 63 chr2L 3553539 3553561 chr2L 3553618 3553636 5 78 1.5 2.0 1.8 1.8 97 chr2L 3553539 intergenic not near genes chr2L 3553588 intergenic not near genes chr2L 3553636 intergenic not near genes chr2L_5_3550001 chr2L_3550001 RAL-365 64 chr2L 3634101 3634133 chr2L 3634183 3634215 10 82 1.5 2.5 2.0 3.3 114 chr2L 3634101 intron for - chr2L 3634158 intron for - chr2L 3634215 intron for - chr2L_10_3630001 chr2L_3630001 RAL-365 65 chr2L 3819035 3819055 chr2L 3819117 3819137 6 82 1.5 0.5 1.0 3.0 102 chr2L 3819035 intergenic not near genes chr2L 3819086 intergenic not near genes chr2L 3819137 intergenic not near genes chr2L_6_3815001 chr2L_3815001 RAL-365 66 chr2L 3883608 3883614 chr2L 3883761 3883767 4 153 2.5 1.5 2.0 1.3 159 chr2L 3883608 intron capu - chr2L 3883688 intron capu - chr2L 3883767 intron capu - chr2L_4_3880001 chr2L_3880001 RAL-365 67 chr2L 4152252 4152252 chr2L 16217660 16217660 5 12065408 8.5 8.5 8.5 0.5 12065408 chr2L 4152252 intergenic not near genes chr2L 10184956 exon Sur - chr2L 16217660 intergenic not near genes chr2L_5_10180001 chr2L_10180001 RAL-365 68 chr2L 4160506 4160524 chr2L 4160915 4160935 4 410 3.0 1.5 2.2 1.2 429 chr2L 4160506 intergenic not near genes chr2L 4160720 intergenic not near genes chr2L 4160935 intergenic not near genes chr2L_4_4160001 chr2L_4160001 RAL-365 69 chr2L 4184494 4184505 chr2L 4184812 4184823 5 318 0.5 3.0 1.8 1.8 329 chr2L 4184494 intergenic not near genes chr2L 4184658 intergenic not near genes chr2L 4184823 intergenic not near genes chr2L_5_4180001 chr2L_4180001 RAL-365 70 chr2L 4294005 4294015 chr2L 4294097 4294107 4 92 2.0 4.0 3.0 1.0 102 chr2L 4294005 intron tutl + chr2L 4294056 intron tutl + chr2L 4294107 intron tutl + chr2L_4_4290001 chr2L_4290001 RAL-365 71 chr2L 4298882 4298896 chr2L 4298989 4299003 5 107 3.5 4.0 3.8 1.0 121 chr2L 4298882 intron tutl + chr2L 4298942 intron tutl + chr2L 4299003 intron tutl + chr2L_5_4295001 chr2L_4295001 RAL-365 72 chr2L 4316831 4316838 chr2L 4316909 4316916 4 78 6.5 3.5 5.0 0.7 85 chr2L 4316831 intron tutl + chr2L 4316874 intron tutl + chr2L 4316916 intron tutl + chr2L_4_4315001 chr2L_4315001 RAL-365 73 chr2L 4432011 4432020 chr2L 4432096 4432105 5 85 5.0 1.0 3.0 1.2 94 chr2L 4432011 intron CG15431 - chr2L 4432058 intron CG15431 - chr2L 4432105 intron CG15431 - chr2L_5_4430001 chr2L_4430001 RAL-365 74 chr2L 4601720 4601733 chr2L 4609161 4609174 mdg1 5 7441 1.0 5.0 3.0 1.2 7454 chr2L 4601720 intron dp - chr2L 4605447 intron dp - chr2L 4609174 intron dp - chr2L_5_4605001 chr2L_4605001 RAL-365 75 chr2L 4782044 4782063 chr2L 4782121 4782140 5 77 2.5 0.5 1.5 2.0 96 chr2L 4782044 intron CG15630 - chr2L 4782092 intron CG15630 - chr2L 4782140 intron CG15630 - chr2L_5_4780001 chr2L_4780001 RAL-365 76 chr2L 4858466 4858485 chr2L 4858554 4858573 5 88 1.0 1.5 1.2 2.3 107 chr2L 4858466 intron pog + chr2L 4858520 intron pog + chr2L 4858573 intron pog + chr2L_5_4855001 chr2L_4855001 RAL-365 77 chr2L 4931644 4931661 chr2L 4931902 4931919 4 258 0.5 4.0 2.2 1.2 275 chr2L 4931644 intron hoe1 - chr2L 4931782 intron hoe1 - chr2L 4931919 exon hoe1 - chr2L_4_4930001 chr2L_4930001 RAL-365 78 chr2L 5120976 5120999 chr2L 5121070 5121093 5 94 1.5 2.5 2.0 1.7 117 chr2L 5120976 intron Msp300 + chr2L 5121034 intron Msp300 + chr2L 5121093 intron Msp300 + chr2L_5_5120001 chr2L_5120001 RAL-365 79 chr2L 5242936 5242936 chr2L 16217660 16217660 7 10974724 15.0 8.5 11.8 0.5 10974724 chr2L 5242936 intron tkv - chr2L 10730298 3` UTR,5` UTR CG6443 +,CG17118 + chr2L 16217660 intergenic not near genes chr2L_7_10730001 chr2L_10730001 RAL-365 80 chr2L 5342769 5342796 chr2L 5345149 5345176 Doc 5 2380 0.0 1.0 0.5 3.3 2407 chr2L 5342769 intergenic not near genes chr2L 5343972 intergenic not near genes chr2L 5345176 intergenic not near genes chr2L_5_5340001 chr2L_5340001 RAL-365 81 chr2L 5476204 5476227 chr2L 5476280 5476303 6 75 1.5 2.0 1.8 2.1 99 chr2L 5476204 intergenic not near genes chr2L 5476254 intergenic not near genes chr2L 5476303 intergenic not near genes chr2L_6_5475001 chr2L_5475001 RAL-365 82 chr2L 5511333 5511356 chr2L 5511416 5511439 6 83 1.5 3.5 2.5 1.7 106 chr2L 5511333 intergenic not near genes chr2L 5511386 intergenic not near genes chr2L 5511439 intergenic not near genes chr2L_6_5510001 chr2L_5510001 RAL-365 83 chr2L 5695860 5695892 chr2L 5695952 5695983 4 92 2.0 0.5 1.2 1.8 123 chr2L 5695860 intergenic not near genes chr2L 5695922 intergenic not near genes chr2L 5695983 intergenic not near genes chr2L_4_5695001 chr2L_5695001 RAL-365 84 chr2L 5762447 5762478 chr2L 5762532 5762563 5 85 2.0 1.0 1.5 2.0 116 chr2L 5762447 intergenic CG11030 +,obst-E - chr2L 5762505 intergenic obst-E -,CG11030 + chr2L 5762563 3` UTR obst-E - chr2L_5_5760001 chr2L_5760001 RAL-365 85 chr2L 5805223 5805254 chr2L 5805342 5805373 6 119 3.5 2.5 3.0 1.5 150 chr2L 5805223 intergenic CG11034 + chr2L 5805298 intergenic CG11034 + chr2L 5805373 intergenic CG11034 + chr2L_6_5805001 chr2L_5805001 RAL-365 86 chr2L 5825072 5825099 chr2L 5825157 5825193 5 90 0.5 0.0 0.2 4.2 121 chr2L 5825072 5` UTR TrissinR + chr2L 5825132 5` UTR TrissinR + chr2L 5825193 5` UTR TrissinR + chr2L_5_5825001 chr2L_5825001 RAL-365 87 chr2L 5827714 5827736 chr2L 5836722 5836744 roo 9 9008 4.0 3.0 3.5 2.0 9030 chr2L 5827714 intron TrissinR + chr2L 5832229 intron TrissinR + chr2L 5836744 intron TrissinR + chr2L_9_5830001 chr2L_5830001 RAL-365 88 chr2L 5887605 5887635 chr2L 5887686 5887716 10 81 1.5 2.5 2.0 3.3 111 chr2L 5887605 3` UTR CR44577 - chr2L 5887660 3` UTR CR44577 - chr2L 5887716 3` UTR CR44577 - chr2L_10_5885001 chr2L_5885001 RAL-365 89 chr2L 6007101 6007126 chr2L 6007177 6007202 6 76 1.5 0.0 0.8 3.3 101 chr2L 6007101 intergenic CG9098 -,Gal - chr2L 6007152 intergenic CG9098 -,Gal - chr2L 6007202 intergenic CG9098 -,Gal - chr2L_6_6005001 chr2L_6005001 RAL-365 90 chr2L 6253622 6253631 chr2L 6253698 6253707 6 76 4.5 1.5 3.0 1.5 85 chr2L 6253622 intron Ddr + chr2L 6253664 intron Ddr + chr2L 6253707 intron Ddr + chr2L_6_6250001 chr2L_6250001 RAL-365 91 chr2L 6363149 6363183 chr2L 6366075 6366109 Burdock 7 2926 0.0 0.5 0.2 5.8 2960 chr2L 6363149 intergenic not near genes chr2L 6364629 intergenic not near genes chr2L 6366109 intergenic not near genes chr2L_7_6360001 chr2L_6360001 RAL-365 92 chr2L 6544371 6544394 chr2L 6544463 6544486 4 91 0.0 1.0 0.5 2.7 115 chr2L 6544371 intron eya - chr2L 6544428 intron eya - chr2L 6544486 intron eya - chr2L_4_6540001 chr2L_6540001 RAL-365 93 chr2L 6598122 6598143 chr2L 6599079 6599100 7 957 2.0 3.0 2.5 2.0 978 chr2L 6598122 intron CG11319 - chr2L 6598611 intron CG11319 - chr2L 6599100 intron CG11319 - chr2L_7_6595001 chr2L_6595001 RAL-365 94 chr2L 6620325 6620340 chr2L 6620413 6620429 4 87 1.0 5.0 3.0 1.0 104 chr2L 6620325 intron CG11320 - chr2L 6620377 intron CG11320 - chr2L 6620429 intron CG11320 - chr2L_4_6620001 chr2L_6620001 RAL-365 95 chr2L 6643823 6643845 chr2L 6643994 6644016 6 171 4.0 3.0 3.5 1.3 193 chr2L 6643823 intron CG31635 - chr2L 6643920 intron CG31635 - chr2L 6644016 intron CG31635 - chr2L_6_6640001 chr2L_6640001 RAL-365 96 chr2L 6724530 6724556 chr2L 6724613 6724639 5 83 2.0 0.5 1.2 2.3 109 chr2L 6724530 intron Liprin-alpha + chr2L 6724584 intron Liprin-alpha + chr2L 6724639 intron Liprin-alpha + chr2L_5_6720001 chr2L_6720001 RAL-365 97 chr2L 6771983 6772015 chr2L 6772070 6772102 5 87 3.0 1.5 2.2 1.6 119 chr2L 6771983 intron CG11321 - chr2L 6772042 intron CG11321 - chr2L 6772102 intron CG11321 - chr2L_5_6770001 chr2L_6770001 RAL-365 98 chr2L 6799535 6799567 chr2L 6799623 6799655 5 88 2.5 0.0 1.2 2.3 120 chr2L 6799535 5` UTR CR43610 + chr2L 6799595 5` UTR CR43610 + chr2L 6799655 intergenic CR43610 +,CG17376 - chr2L_5_6795001 chr2L_6795001 RAL-365 99 chr2L 6876784 6876807 chr2L 6882975 6882998 diver 5 6191 1.0 2.0 1.5 2.0 6214 chr2L 6876784 intron Nlg2 + chr2L 6879891 intron Nlg2 + chr2L 6882998 intron Nlg2 + chr2L_5_6875001 chr2L_6875001 RAL-365 100 chr2L 7115003 7115031 chr2L 7115132 7115160 7 129 0.0 2.0 1.0 3.5 157 chr2L 7115003 intron Pvf3 - chr2L 7115082 intron Pvf3 - chr2L 7115160 intron Pvf3 - chr2L_7_7115001 chr2L_7115001 RAL-365 101 chr2L 7138099 7138117 chr2L 7138196 7138217 5 99 0.5 3.0 1.8 1.8 118 chr2L 7138099 intron Pvf3 - chr2L 7138158 intron Pvf3 - chr2L 7138217 intron Pvf3 - chr2L_5_7135001 chr2L_7135001 RAL-365 102 chr2L 7167601 7167630 chr2L 7167676 7167708 11 77 1.0 1.5 1.2 5.0 107 chr2L 7167601 intergenic not near genes chr2L 7167654 intergenic not near genes chr2L 7167708 intergenic not near genes chr2L_11_7165001 chr2L_7165001 RAL-365 103 chr2L 7325911 7325934 chr2L 7325995 7326019 4 85 1.5 1.0 1.2 1.8 108 chr2L 7325911 intergenic not near genes chr2L 7325965 intergenic not near genes chr2L 7326019 intergenic not near genes chr2L_4_7325001 chr2L_7325001 RAL-365 104 chr2L 7343325 7343353 chr2L 7350440 7350469 roo 8 7116 1.5 3.0 2.2 2.5 7144 chr2L 7343325 intron Wnt6 + chr2L 7346897 intron Wnt6 + chr2L 7350469 intron Wnt6 + chr2L_8_7345001 chr2L_7345001 RAL-365 105 chr2L 7461051 7461078 chr2L 7461304 7461332 5 254 1.5 3.0 2.2 1.6 281 chr2L 7461051 intron Gr28b - chr2L 7461192 intron Gr28b - chr2L 7461332 intron Gr28b - chr2L_5_7460001 chr2L_7460001 RAL-365 106 chr2L 7493671 7493697 chr2L 7493882 7493908 5 211 0.0 1.0 0.5 3.3 237 chr2L 7493671 intron Ziz - chr2L 7493790 intron Ziz - chr2L 7493908 intron Ziz - chr2L_5_7490001 chr2L_7490001 RAL-365 107 chr2L 7555729 7555761 chr2L 7555813 7555845 6 84 1.0 1.5 1.2 2.7 116 chr2L 7555729 intron RapGAP1 - chr2L 7555787 intron RapGAP1 - chr2L 7555845 intron RapGAP1 - chr2L_6_7555001 chr2L_7555001 RAL-365 108 chr2L 7742555 7742570 chr2L 7742634 7742649 5 80 0.5 2.5 1.5 2.0 94 chr2L 7742555 intergenic not near genes chr2L 7742602 intergenic not near genes chr2L 7742649 intergenic not near genes chr2L_5_7740001 chr2L_7740001 RAL-365 109 chr2L 7768850 7768869 chr2L 7768926 7768945 4 76 0.0 2.0 1.0 2.0 95 chr2L 7768850 intron CG7191 + chr2L 7768898 intron CG7191 + chr2L 7768945 intron CG7191 + chr2L_4_7765001 chr2L_7765001 RAL-365 110 chr2L 7959043 7959059 chr2L 7960454 7960470 pogo 6 1411 3.5 0.0 1.8 2.1 1427 chr2L 7959043 intron Snoo - chr2L 7959756 intron Snoo - chr2L 7960470 intron Snoo - chr2L_6_7955001 chr2L_7955001 RAL-365 111 chr2L 8033034 8033056 chr2L 8033128 8033149 4 94 2.0 3.0 2.5 1.1 115 chr2L 8033034 intron,intron CG7367 -,Cka + chr2L 8033092 intron,intron CG7367 -,Cka + chr2L 8033149 intron,intron CG7367 -,Cka + chr2L_4_8030001 chr2L_8030001 RAL-365 112 chr2L 8167145 8167178 chr2L 8167236 8167268 5 91 2.0 2.0 2.0 1.7 123 chr2L 8167145 intron Piezo + chr2L 8167206 intron Piezo + chr2L 8167268 intron Piezo + chr2L_5_8165001 chr2L_8165001 RAL-365 113 chr2L 8171275 8171294 chr2L 8171356 8171375 5 81 0.0 2.0 1.0 2.5 100 chr2L 8171275 intron Piezo + chr2L 8171325 intron Piezo + chr2L 8171375 intron Piezo + chr2L_5_8170001 chr2L_8170001 RAL-365 114 chr2L 8286295 8286326 chr2L 8286382 8286413 11 87 1.5 1.0 1.2 5.0 118 chr2L 8286295 intron Btk29A - chr2L 8286354 intron Btk29A - chr2L 8286413 intron Btk29A - chr2L_11_8285001 chr2L_8285001 RAL-365 115 chr2L 8452418 8452445 chr2L 8461589 8461614 roo 8 9170 3.0 2.0 2.5 2.3 9196 chr2L 8452418 intron fu12 - chr2L 8457016 intron fu12 - chr2L 8461614 intron fu12 - chr2L_8_8455001 chr2L_8455001 RAL-365 116 chr2L 8698326 8698356 chr2L 8698465 8698495 5 139 1.5 0.0 0.8 2.8 169 chr2L 8698326 intron Hnf4 - chr2L 8698410 intron Hnf4 - chr2L 8698495 intron Hnf4 - chr2L_5_8695001 chr2L_8695001 RAL-365 117 chr2L 8723114 8723147 chr2L 8731491 8731524 Tirant 11 8376 0.5 0.5 0.5 7.3 8410 chr2L 8723114 intron raw - chr2L 8727319 intron raw - chr2L 8731524 intron raw - chr2L_11_8725001 chr2L_8725001 RAL-365 118 chr2L 8746183 8746202 chr2L 8746267 8746286 7 84 1.0 4.0 2.5 2.0 103 chr2L 8746183 intergenic not near genes chr2L 8746234 intergenic not near genes chr2L 8746286 intergenic not near genes chr2L_7_8745001 chr2L_8745001 RAL-365 119 chr2L 8751485 8751520 chr2L 8751573 8751607 9 88 0.5 0.0 0.2 7.5 122 chr2L 8751485 intergenic CG45307 - chr2L 8751546 intergenic CG45307 - chr2L 8751607 intergenic CG45307 - chr2L_9_8750001 chr2L_8750001 RAL-365 120 chr2L 8784703 8784722 chr2L 8784814 8784833 7 111 0.5 0.5 0.5 4.7 130 chr2L 8784703 intergenic not near genes chr2L 8784768 intergenic not near genes chr2L 8784833 intergenic not near genes chr2L_7_8780001 chr2L_8780001 RAL-365 121 chr2L 8789307 8789340 chr2L 8789383 8789415 6 76 3.0 2.0 2.5 1.7 108 chr2L 8789307 intergenic not near genes chr2L 8789361 intergenic not near genes chr2L 8789415 intergenic not near genes chr2L_6_8785001 chr2L_8785001 RAL-365 122 chr2L 8976224 8976245 chr2L 8976316 8976337 4 92 1.0 2.5 1.8 1.4 113 chr2L 8976224 intergenic not near genes chr2L 8976280 intergenic not near genes chr2L 8976337 intergenic not near genes chr2L_4_8975001 chr2L_8975001 RAL-365 123 chr2L 8980460 8980477 chr2L 8980549 8980559 4 87 2.0 0.0 1.0 2.0 99 chr2L 8980460 intron CG13101 - chr2L 8980510 intron CG13101 - chr2L 8980559 intron CG13101 - chr2L_4_8980001 chr2L_8980001 RAL-365 124 chr2L 9000284 9000305 chr2L 9007794 9007815 roo 8 7510 1.5 1.5 1.5 3.2 7531 chr2L 9000284 intergenic Try29F + chr2L 9004050 intergenic not near genes chr2L 9007815 intergenic not near genes chr2L_8_9000001 chr2L_9000001 RAL-365 125 chr2L 9084338 9084340 chr2L 16217660 16217660 8 7133321 7.0 8.5 7.8 0.9 7133322 chr2L 9084338 intron Toll-4 + chr2L 12650999 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_8_12650001 chr2L_12650001 RAL-365 126 chr2L 9095574 9095601 chr2L 9095661 9095688 4 87 1.0 1.5 1.2 1.8 114 chr2L 9095574 intergenic not near genes chr2L 9095631 intergenic not near genes chr2L 9095688 intergenic not near genes chr2L_4_9095001 chr2L_9095001 RAL-365 127 chr2L 9202059 9202084 chr2L 9202134 9202160 5 76 3.0 3.0 3.0 1.2 101 chr2L 9202059 intron tai + chr2L 9202110 intron tai + chr2L 9202160 intron tai + chr2L_5_9200001 chr2L_9200001 RAL-365 128 chr2L 9287325 9287355 chr2L 9287422 9287452 7 97 1.5 2.0 1.8 2.5 127 chr2L 9287325 intron Ggamma30A + chr2L 9287388 intron Ggamma30A + chr2L 9287452 intron Ggamma30A + chr2L_7_9285001 chr2L_9285001 RAL-365 129 chr2L 9297378 9297405 chr2L 9297455 9297482 7 77 3.5 2.0 2.8 1.8 104 chr2L 9297378 3` UTR Ggamma30A + chr2L 9297430 3` UTR Ggamma30A + chr2L 9297482 3` UTR Ggamma30A + chr2L_7_9295001 chr2L_9295001 RAL-365 130 chr2L 9304356 9304515 chr2L 9304440 9304594 8 80 3.0 0.5 1.8 2.9 238 chr2L 9304356 intergenic CR42844 - chr2L 9304475 3` UTR CR42844 - chr2L 9304594 3` UTR CR42844 - chr2L_8_9300001 chr2L_9300001 RAL-365 131 chr2L 9335012 9335043 chr2L 9335091 9335121 6 79 2.5 1.0 1.8 2.1 109 chr2L 9335012 intron Eaat1 + chr2L 9335066 intron Eaat1 + chr2L 9335121 intron Eaat1 + chr2L_6_9335001 chr2L_9335001 RAL-365 132 chr2L 9387253 9387274 chr2L 9387351 9387369 4 97 1.5 0.0 0.8 2.2 116 chr2L 9387253 intron Shawl - chr2L 9387311 intron Shawl - chr2L 9387369 intron Shawl - chr2L_4_9385001 chr2L_9385001 RAL-365 133 chr2L 9397373 9397395 chr2L 9397455 9397477 4 82 15.0 17.5 16.2 0.2 104 chr2L 9397373 intron,exon Shawl -,CG4438 - chr2L 9397425 intron,exon Shawl -,CG4438 - chr2L 9397477 intron,exon Shawl -,CG4438 - chr2L_4_9395001 chr2L_9395001 RAL-365 134 chr2L 9454989 9455002 chr2L 9455091 9455104 4 102 2.5 3.0 2.8 1.1 115 chr2L 9454989 intron numb + chr2L 9455046 intron numb + chr2L 9455104 intron numb + chr2L_4_9455001 chr2L_9455001 RAL-365 135 chr2L 9490524 9490537 chr2L 9490604 9490617 4 80 3.0 2.0 2.5 1.1 93 chr2L 9490524 intergenic not near genes chr2L 9490570 intergenic not near genes chr2L 9490617 intergenic not near genes chr2L_4_9490001 chr2L_9490001 RAL-365 136 chr2L 9524135 9524157 chr2L 9524225 9524247 4 90 0.5 2.0 1.2 1.8 112 chr2L 9524135 intron Oatp30B + chr2L 9524191 intron Oatp30B + chr2L 9524247 intron Oatp30B + chr2L_4_9520001 chr2L_9520001 RAL-365 137 chr2L 9973728 9973758 chr2L 9980847 9980877 HMS-Beagle 7 7118 2.0 6.5 4.2 1.3 7149 chr2L 9973728 intergenic not near genes chr2L 9977302 intergenic not near genes chr2L 9980877 intergenic not near genes chr2L_7_9975001 chr2L_9975001 RAL-365 138 chr2L 9986353 9986382 chr2L 9986448 9986477 10 94 2.5 1.5 2.0 3.3 124 chr2L 9986353 intron bib + chr2L 9986415 intron bib + chr2L 9986477 intron bib + chr2L_10_9985001 chr2L_9985001 RAL-365 139 chr2L 10005102 10005133 chr2L 10005195 10005225 5 93 1.0 5.5 3.2 1.2 123 chr2L 10005102 intron CG4747 + chr2L 10005164 intron CG4747 + chr2L 10005225 intron CG4747 + chr2L_5_10005001 chr2L_10005001 RAL-365 140 chr2L 10023074 10023102 chr2L 10023159 10023187 5 85 2.0 1.5 1.8 1.8 113 chr2L 10023074 intergenic not near genes chr2L 10023130 intergenic not near genes chr2L 10023187 intergenic not near genes chr2L_5_10020001 chr2L_10020001 RAL-365 141 chr2L 10039109 10039136 chr2L 10039330 10039357 12 221 2.5 1.0 1.8 4.3 248 chr2L 10039109 intergenic obst-B + chr2L 10039233 intergenic obst-B + chr2L 10039357 intergenic obst-B + chr2L_12_10035001 chr2L_10035001 RAL-365 142 chr2L 10051726 10051749 chr2L 10051811 10051834 8 85 2.5 3.5 3.0 2.0 108 chr2L 10051726 5` UTR CR44874 + chr2L 10051780 5` UTR CR44874 + chr2L 10051834 5` UTR CR44874 + chr2L_8_10050001 chr2L_10050001 RAL-365 143 chr2L 10102599 10102631 chr2L 10102679 10102712 4 81 1.0 2.0 1.5 1.6 113 chr2L 10102599 intron,intron CG44153 -,CG34109 + chr2L 10102656 intron,intron CG44153 -,CG34109 + chr2L 10102712 intron,intron CG44153 -,CG34109 + chr2L_4_10100001 chr2L_10100001 RAL-365 144 chr2L 10156337 10156353 chr2L 10163806 10163822 blood 4 7469 1.0 1.5 1.2 1.8 7485 chr2L 10156337 intron,3` UTR CG44153 -,CG4839 + chr2L 10160080 intron CG44153 - chr2L 10163822 intron CG44153 - chr2L_4_10160001 chr2L_10160001 RAL-365 145 chr2L 10171168 10171181 chr2L 10171266 10171279 4 98 0.5 0.5 0.5 2.7 111 chr2L 10171168 intron CG44153 - chr2L 10171224 intron CG44153 - chr2L 10171279 intron CG44153 - chr2L_4_10170001 chr2L_10170001 RAL-365 146 chr2L 10515359 10515389 chr2L 10515452 10515482 8 93 2.5 3.0 2.8 2.1 123 chr2L 10515359 intron,intron CG45083 -,Fatp - chr2L 10515420 intron,intron CG45083 -,Fatp - chr2L 10515482 intron,intron CG45083 -,Fatp - chr2L_8_10515001 chr2L_10515001 RAL-365 147 chr2L 10534156 10534174 chr2L 10534243 10534261 8 87 2.0 2.5 2.2 2.5 105 chr2L 10534156 intergenic CG18302 + chr2L 10534208 intergenic CG18302 + chr2L 10534261 intergenic CG18302 + chr2L_8_10530001 chr2L_10530001 RAL-365 148 chr2L 10572701 10572726 chr2L 10572782 10572806 11 81 5.5 4.0 4.8 1.9 105 chr2L 10572701 intron Trim9 + chr2L 10572754 intron Trim9 + chr2L 10572806 intron Trim9 + chr2L_11_10570001 chr2L_10570001 RAL-365 149 chr2L 10580685 10580693 chr2L 10580761 10580769 4 76 1.5 1.5 1.5 1.6 84 chr2L 10580685 intron Trim9 + chr2L 10580727 intron Trim9 + chr2L 10580769 intron Trim9 + chr2L_4_10580001 chr2L_10580001 RAL-365 150 chr2L 10592859 10592874 chr2L 10600521 10600536 opus 8 7662 1.5 3.0 2.2 2.5 7677 chr2L 10592859 intron Trim9 + chr2L 10596698 intron Trim9 + chr2L 10600536 intron Trim9 + chr2L_8_10595001 chr2L_10595001 RAL-365 151 chr2L 10631217 10631240 chr2L 10631349 10631372 4 132 2.0 0.0 1.0 2.0 155 chr2L 10631217 intron CG7329 - chr2L 10631294 intron CG7329 - chr2L 10631372 intron CG7329 - chr2L_4_10630001 chr2L_10630001 RAL-365 152 chr2L 10683450 10683478 chr2L 10683529 10683557 4 79 0.5 0.0 0.2 3.3 107 chr2L 10683450 3` UTR CG7299 - chr2L 10683504 3` UTR CG7299 - chr2L 10683557 3` UTR CG7299 - chr2L_4_10680001 chr2L_10680001 RAL-365 153 chr2L 10688540 10688567 chr2L 10688616 10688643 4 76 0.0 1.5 0.8 2.2 103 chr2L 10688540 intergenic CG7294 - chr2L 10688592 intergenic CG7294 - chr2L 10688643 intergenic CG7294 - chr2L_4_10685001 chr2L_10685001 RAL-365 154 chr2L 10721288 10721303 chr2L 10721365 10721382 4 78 1.0 0.5 0.8 2.2 94 chr2L 10721288 intergenic not near genes chr2L 10721335 intergenic not near genes chr2L 10721382 intergenic not near genes chr2L_4_10720001 chr2L_10720001 RAL-365 155 chr2L 10813677 10813700 chr2L 10813829 10813851 6 152 2.5 3.0 2.8 1.6 174 chr2L 10813677 intron Nos - chr2L 10813764 intron Nos - chr2L 10813851 intron Nos - chr2L_6_10810001 chr2L_10810001 RAL-365 156 chr2L 10836340 10836364 chr2L 10836421 10836445 6 81 1.0 2.5 1.8 2.1 105 chr2L 10836340 intron Nos - chr2L 10836392 intron Nos - chr2L 10836445 intron Nos - chr2L_6_10835001 chr2L_10835001 RAL-365 157 chr2L 10862839 10862876 chr2L 10864453 10864488 Rt1c 11 1614 3.0 2.5 2.8 2.9 1649 chr2L 10862839 3` UTR CR43807 - chr2L 10863664 intron CR43807 - chr2L 10864488 3` UTR CR43807 - chr2L_11_10860001 chr2L_10860001 RAL-365 158 chr2L 10873060 10873070 chr2L 10873139 10873150 6 80 2.0 3.0 2.5 1.7 90 chr2L 10873060 intergenic not near genes chr2L 10873105 intergenic not near genes chr2L 10873150 intergenic not near genes chr2L_6_10870001 chr2L_10870001 RAL-365 159 chr2L 10884377 10884404 chr2L 10884455 10884483 5 79 3.0 4.5 3.8 1.0 106 chr2L 10884377 intergenic not near genes chr2L 10884430 intergenic not near genes chr2L 10884483 intergenic not near genes chr2L_5_10880001 chr2L_10880001 RAL-365 160 chr2L 10946953 10946972 chr2L 10956168 10956187 roo 8 9214 3.0 3.5 3.2 1.9 9234 chr2L 10946953 intron dpr2 - chr2L 10951570 intron dpr2 - chr2L 10956187 intron dpr2 - chr2L_8_10950001 chr2L_10950001 RAL-365 161 chr2L 11147807 11147829 chr2L 11148054 11148076 7 247 0.0 2.5 1.2 3.2 269 chr2L 11147807 intron Gyc32E - chr2L 11147942 intron Gyc32E - chr2L 11148076 intron Gyc32E - chr2L_7_11145001 chr2L_11145001 RAL-365 162 chr2L 11292376 11292407 chr2L 11292458 11292489 9 82 4.0 2.0 3.0 2.2 113 chr2L 11292376 intergenic not near genes chr2L 11292432 intergenic not near genes chr2L 11292489 intergenic not near genes chr2L_9_11290001 chr2L_11290001 RAL-365 163 chr2L 11418656 11418688 chr2L 11418735 11418767 7 79 1.0 1.0 1.0 3.5 111 chr2L 11418656 intergenic not near genes chr2L 11418712 intergenic not near genes chr2L 11418767 intergenic not near genes chr2L_7_11415001 chr2L_11415001 RAL-365 164 chr2L 11483392 11483402 chr2L 11483465 11483482 5 78 0.5 4.0 2.2 1.6 90 chr2L 11483392 intergenic not near genes chr2L 11483437 intergenic not near genes chr2L 11483482 intergenic not near genes chr2L_5_11480001 chr2L_11480001 RAL-365 165 chr2L 11491133 11491159 chr2L 11491214 11491240 8 81 2.0 3.0 2.5 2.3 107 chr2L 11491133 intergenic not near genes chr2L 11491186 intergenic not near genes chr2L 11491240 intergenic not near genes chr2L_8_11490001 chr2L_11490001 RAL-365 166 chr2L 11537976 11537997 chr2L 11538069 11538090 6 93 3.5 2.0 2.8 1.6 114 chr2L 11537976 intergenic not near genes chr2L 11538033 intergenic not near genes chr2L 11538090 intergenic not near genes chr2L_6_11535001 chr2L_11535001 RAL-365 167 chr2L 11563641 11563670 chr2L 11568845 11568874 copia 8 5204 0.5 4.0 2.2 2.5 5233 chr2L 11563641 intergenic not near genes chr2L 11566258 intergenic not near genes chr2L 11568874 intergenic not near genes chr2L_8_11565001 chr2L_11565001 RAL-365 168 chr2L 11612662 11612688 chr2L 11612750 11612776 7 88 4.5 2.5 3.5 1.6 114 chr2L 11612662 intron kek2 + chr2L 11612719 intron kek2 + chr2L 11612776 intron kek2 + chr2L_7_11610001 chr2L_11610001 RAL-365 169 chr2L 11707047 11707074 chr2L 11707152 11707179 7 105 2.0 2.0 2.0 2.3 132 chr2L 11707047 intergenic not near genes chr2L 11707113 intergenic not near genes chr2L 11707179 intergenic not near genes chr2L_7_11705001 chr2L_11705001 RAL-365 170 chr2L 11770603 11770617 chr2L 11770690 11770704 8 87 2.5 0.0 1.2 3.6 101 chr2L 11770603 intergenic not near genes chr2L 11770654 intergenic not near genes chr2L 11770704 intergenic not near genes chr2L_8_11770001 chr2L_11770001 RAL-365 171 chr2L 11826177 11826202 chr2L 11826263 11826288 7 85 2.5 2.5 2.5 2.0 111 chr2L 11826177 intron Pde1c - chr2L 11826232 intron Pde1c - chr2L 11826288 intron Pde1c - chr2L_7_11825001 chr2L_11825001 RAL-365 172 chr2L 11828438 11828460 chr2L 11828514 11828536 7 76 2.0 2.0 2.0 2.3 98 chr2L 11828438 intron,intron Pde1c -,esc - chr2L 11828487 intron,intron Pde1c -,esc - chr2L 11828536 intron,intron Pde1c -,esc - chr2L_7_11825001 chr2L_11825001 RAL-365 173 chr2L 11934500 11934533 chr2L 11934581 11934614 5 81 1.5 0.5 1.0 2.5 114 chr2L 11934500 intergenic Or33a + chr2L 11934557 exon Or33a + chr2L 11934614 exon Or33a + chr2L_5_11930001 chr2L_11930001 RAL-365 174 chr2L 11944023 11944055 chr2L 11944104 11944135 6 81 2.0 1.0 1.5 2.4 112 chr2L 11944023 intergenic Cry + chr2L 11944079 intergenic Cry + chr2L 11944135 5` UTR Cry + chr2L_6_11940001 chr2L_11940001 RAL-365 175 chr2L 12031395 12031418 chr2L 12031476 12031499 8 81 2.5 1.0 1.8 2.9 104 chr2L 12031395 intron dmGlut + chr2L 12031447 intron dmGlut + chr2L 12031499 intron dmGlut + chr2L_8_12030001 chr2L_12030001 RAL-365 176 chr2L 12067330 12067359 chr2L 12074382 12074411 297 6 7052 1.5 0.0 0.8 3.3 7081 chr2L 12067330 intergenic not near genes chr2L 12070870 intergenic not near genes chr2L 12074411 intergenic not near genes chr2L_6_12070001 chr2L_12070001 RAL-365 177 chr2L 12131469 12131497 chr2L 12131565 12131593 5 95 2.5 4.0 3.2 1.2 124 chr2L 12131469 intron rho-6 - chr2L 12131531 intron rho-6 - chr2L 12131593 intron rho-6 - chr2L_5_12130001 chr2L_12130001 RAL-365 178 chr2L 12157612 12157641 chr2L 12157691 12157720 8 79 2.0 1.0 1.5 3.2 108 chr2L 12157612 intron CG31760 + chr2L 12157666 intron CG31760 + chr2L 12157720 intron CG31760 + chr2L_8_12155001 chr2L_12155001 RAL-365 179 chr2L 12158514 12158533 chr2L 12158706 12158725 9 192 2.0 1.5 1.8 3.2 211 chr2L 12158514 intron CG31760 + chr2L 12158620 intron CG31760 + chr2L 12158725 intron CG31760 + chr2L_9_12155001 chr2L_12155001 RAL-365 180 chr2L 12305413 12305426 chr2L 12305501 12305514 5 88 2.5 2.5 2.5 1.4 101 chr2L 12305413 intron aret + chr2L 12305464 intron aret + chr2L 12305514 intron aret + chr2L_5_12305001 chr2L_12305001 RAL-365 181 chr2L 12322766 12322799 chr2L 12322842 12322875 5 76 0.5 0.5 0.5 3.3 109 chr2L 12322766 intergenic not near genes chr2L 12322820 intergenic not near genes chr2L 12322875 intergenic not near genes chr2L_5_12320001 chr2L_12320001 RAL-365 182 chr2L 12349633 12349660 chr2L 12349727 12349754 7 94 1.5 1.5 1.5 2.8 121 chr2L 12349633 intron bru-2 + chr2L 12349694 intron bru-2 + chr2L 12349754 intron bru-2 + chr2L_7_12345001 chr2L_12345001 RAL-365 183 chr2L 12486659 12486680 chr2L 12486739 12486759 6 80 0.5 0.5 0.5 4.0 100 chr2L 12486659 intron bun - chr2L 12486709 intron bun - chr2L 12486759 intron bun - chr2L_6_12485001 chr2L_12485001 RAL-365 184 chr2L 12558318 12558349 chr2L 12565447 12565478 HMS-Beagle 11 7129 1.0 2.0 1.5 4.4 7160 chr2L 12558318 intergenic not near genes chr2L 12561898 intergenic not near genes chr2L 12565478 intergenic not near genes chr2L_11_12560001 chr2L_12560001 RAL-365 185 chr2L 12653792 12653810 chr2L 12653909 12653927 7 117 2.0 1.0 1.5 2.8 135 chr2L 12653792 intergenic not near genes chr2L 12653860 intergenic not near genes chr2L 12653927 intergenic not near genes chr2L_7_12650001 chr2L_12650001 RAL-365 186 chr2L 12693838 12693859 chr2L 12693915 12693936 7 76 2.0 0.0 1.0 3.5 98 chr2L 12693838 exon CG6153 + chr2L 12693887 3` UTR,3` UTR CG6153 +,CG5780 - chr2L 12693936 3` UTR,3` UTR CG6153 +,CG5780 - chr2L_7_12690001 chr2L_12690001 RAL-365 187 chr2L 12728922 12728950 chr2L 12729164 12729191 pogo 5 242 1.0 1.5 1.2 2.3 269 chr2L 12728922 intron MRP + chr2L 12729056 intron MRP + chr2L 12729191 exon MRP + chr2L_5_12725001 chr2L_12725001 RAL-365 188 chr2L 12739171 12739205 chr2L 12743952 12743986 Doc 5 4781 1.0 2.0 1.5 2.0 4815 chr2L 12739171 exon MRP + chr2L 12741578 intron MRP + chr2L 12743986 exon MRP + chr2L_5_12740001 chr2L_12740001 RAL-365 189 chr2L 12760245 12760250 chr2L 12760341 12760346 4 96 2.0 1.5 1.8 1.4 101 chr2L 12760245 intergenic CG15483 - chr2L 12760296 intergenic CG15483 - chr2L 12760346 3` UTR CG15483 - chr2L_4_12760001 chr2L_12760001 RAL-365 190 chr2L 12861695 12861717 chr2L 12863161 12863184 hobo 11 1467 3.0 1.0 2.0 3.7 1489 chr2L 12861695 intergenic not near genes chr2L 12862440 intergenic not near genes chr2L 12863184 intergenic not near genes chr2L_11_12860001 chr2L_12860001 RAL-365 191 chr2L 12905479 12905509 chr2L 12905563 12905593 4 84 1.5 1.5 1.5 1.6 114 chr2L 12905479 intergenic not near genes chr2L 12905536 intergenic not near genes chr2L 12905593 intergenic not near genes chr2L_4_12905001 chr2L_12905001 RAL-365 192 chr2L 12933850 12933882 chr2L 12941317 12941349 blood 7 7467 2.5 4.0 3.2 1.7 7499 chr2L 12933850 intergenic not near genes chr2L 12937600 intergenic not near genes chr2L 12941349 intergenic not near genes chr2L_7_12935001 chr2L_12935001 RAL-365 193 chr2L 12945981 12945996 chr2L 12946061 12946076 4 80 2.5 2.0 2.2 1.2 95 chr2L 12945981 intergenic not near genes chr2L 12946028 intergenic not near genes chr2L 12946076 intergenic not near genes chr2L_4_12945001 chr2L_12945001 RAL-365 194 chr2L 13036247 13036268 chr2L 13036489 13036510 X-element 5 242 3.0 0.5 1.8 1.8 263 chr2L 13036247 intron CG9932 - chr2L 13036378 intron CG9932 - chr2L 13036510 intron CG9932 - chr2L_5_13035001 chr2L_13035001 RAL-365 195 chr2L 13069295 13069302 chr2L 13069416 13069423 5 121 1.5 2.5 2.0 1.7 128 chr2L 13069295 intergenic not near genes chr2L 13069359 intergenic not near genes chr2L 13069423 intergenic not near genes chr2L_5_13065001 chr2L_13065001 RAL-365 196 chr2L 13204316 13204327 chr2L 13204415 13204424 5 98 3.0 2.5 2.8 1.3 108 chr2L 13204316 intron Pect + chr2L 13204370 intron Pect + chr2L 13204424 intron Pect + chr2L_5_13200001 chr2L_13200001 RAL-365 197 chr2L 13266388 13266402 chr2L 13266476 13266490 5 87 4.0 3.5 3.8 1.0 102 chr2L 13266388 intron CG44085 + chr2L 13266439 intron CG44085 + chr2L 13266490 intron CG44085 + chr2L_5_13265001 chr2L_13265001 RAL-365 198 chr2L 13351817 13351838 chr2L 13351903 13351921 6 86 2.0 2.5 2.2 1.9 104 chr2L 13351817 exon CG9395 - chr2L 13351869 intron CG9395 - chr2L 13351921 intron CG9395 - chr2L_6_13350001 chr2L_13350001 RAL-365 199 chr2L 13405656 13405676 chr2L 13410452 13410473 Doc 8 4797 1.0 3.5 2.2 2.5 4817 chr2L 13405656 exon CG7110 + chr2L 13408064 intron CG7110 + chr2L 13410473 intron CG7110 + chr2L_8_13405001 chr2L_13405001 RAL-365 200 chr2L 13449468 13449496 chr2L 13456904 13456932 Quasimodo 5 7436 0.0 1.5 0.8 2.8 7464 chr2L 13449468 intron,5` UTR CG42784 +,Hsp60D - chr2L 13453200 intron CG42784 + chr2L 13456932 intron CG42784 + chr2L_5_13450001 chr2L_13450001 RAL-365 201 chr2L 13522138 13522151 chr2L 13527656 13527669 Transpac 5 5518 1.5 1.5 1.5 2.0 5531 chr2L 13522138 intron B4 - chr2L 13524904 intron B4 - chr2L 13527669 intron B4 - chr2L_5_13520001 chr2L_13520001 RAL-365 202 chr2L 13549165 13549196 chr2L 13549242 13549271 6 77 3.0 6.0 4.5 1.1 106 chr2L 13549165 5` UTR B4 - chr2L 13549218 5` UTR B4 - chr2L 13549271 5` UTR B4 - chr2L_6_13545001 chr2L_13545001 RAL-365 203 chr2L 13699558 13699578 chr2L 13699634 13699655 9 77 2.0 3.5 2.8 2.4 97 chr2L 13699558 intron CG31814 - chr2L 13699606 intron CG31814 - chr2L 13699655 intron CG31814 - chr2L_9_13695001 chr2L_13695001 RAL-365 204 chr2L 13761807 13761835 chr2L 13762918 13762946 Doc 7 1110 1.5 2.0 1.8 2.5 1139 chr2L 13761807 intron TM9SF4 + chr2L 13762376 intron TM9SF4 + chr2L 13762946 intron TM9SF4 + chr2L_7_13760001 chr2L_13760001 RAL-365 205 chr2L 13842132 13842157 chr2L 13842216 13842241 5 83 1.5 0.0 0.8 2.8 109 chr2L 13842132 intron CenG1A + chr2L 13842186 intron CenG1A + chr2L 13842241 intron CenG1A + chr2L_5_13840001 chr2L_13840001 RAL-365 206 chr2L 13853096 13853114 chr2L 13862245 13862264 roo 6 9150 3.0 0.0 1.5 2.4 9168 chr2L 13853096 intron CenG1A + chr2L 13857680 intron CenG1A + chr2L 13862264 intron CenG1A + chr2L_6_13855001 chr2L_13855001 RAL-365 207 chr2L 13981517 13981552 chr2L 13981608 13981642 5 91 3.0 1.0 2.0 1.7 125 chr2L 13981517 exon NimC2 + chr2L 13981580 intron NimC2 + chr2L 13981642 intron NimC2 + chr2L_5_13980001 chr2L_13980001 RAL-365 208 chr2L 14148679 14148701 chr2L 14148797 14148819 4 118 0.5 4.5 2.5 1.1 140 chr2L 14148679 intron CG17341 + chr2L 14148749 intron CG17341 + chr2L 14148819 intron CG17341 + chr2L_4_14145001 chr2L_14145001 RAL-365 209 chr2L 14160686 14160719 chr2L 14160772 14160805 7 86 0.0 2.5 1.2 3.2 119 chr2L 14160686 intergenic CG17341 +,CG43332 - chr2L 14160746 intergenic CG17341 +,CG43332 - chr2L 14160805 intergenic CG17341 +,CG43332 - chr2L_7_14160001 chr2L_14160001 RAL-365 210 chr2L 14222298 14222332 chr2L 14222385 14222418 8 87 1.5 1.0 1.2 3.6 120 chr2L 14222298 intron Dyrk2 - chr2L 14222358 intron Dyrk2 - chr2L 14222418 intron Dyrk2 - chr2L_8_14220001 chr2L_14220001 RAL-365 211 chr2L 14369125 14369153 chr2L 14369241 14369269 5 116 3.0 2.0 2.5 1.4 144 chr2L 14369125 intergenic not near genes chr2L 14369197 intergenic not near genes chr2L 14369269 intergenic not near genes chr2L_5_14365001 chr2L_14365001 RAL-365 212 chr2L 14378648 14378679 chr2L 14378727 14378758 4 78 4.0 0.0 2.0 1.3 110 chr2L 14378648 3` UTR ppk - chr2L 14378703 3` UTR ppk - chr2L 14378758 3` UTR ppk - chr2L_4_14375001 chr2L_14375001 RAL-365 213 chr2L 14413258 14413286 chr2L 14413340 14413368 6 82 3.0 2.5 2.8 1.6 110 chr2L 14413258 intergenic not near genes chr2L 14413313 intergenic not near genes chr2L 14413368 intergenic not near genes chr2L_6_14410001 chr2L_14410001 RAL-365 214 chr2L 14564448 14564474 chr2L 14564540 14564566 15 92 2.5 3.0 2.8 3.9 118 chr2L 14564448 intergenic not near genes chr2L 14564507 intergenic not near genes chr2L 14564566 intergenic not near genes chr2L_15_14560001 chr2L_14560001 RAL-365 215 chr2L 14588387 14588420 chr2L 14588541 14588574 6 153 0.5 0.5 0.5 4.0 187 chr2L 14588387 intergenic CG42680 - chr2L 14588480 intergenic CG42680 - chr2L 14588574 intergenic CG42680 - chr2L_6_14585001 chr2L_14585001 RAL-365 216 chr2L 14590199 14590219 chr2L 14590279 14590299 8 80 1.5 4.0 2.8 2.1 100 chr2L 14590199 intergenic not near genes chr2L 14590249 intergenic not near genes chr2L 14590299 intergenic not near genes chr2L_8_14590001 chr2L_14590001 RAL-365 217 chr2L 14595423 14595434 chr2L 14595514 14595525 6 91 0.0 1.0 0.5 4.0 102 chr2L 14595423 intergenic not near genes chr2L 14595474 intergenic not near genes chr2L 14595525 intergenic not near genes chr2L_6_14595001 chr2L_14595001 RAL-365 218 chr2L 14619953 14619982 chr2L 14620194 14620223 12 241 0.5 1.0 0.8 6.7 270 chr2L 14619953 intron osp - chr2L 14620088 intron osp - chr2L 14620223 intron osp - chr2L_12_14620001 chr2L_14620001 RAL-365 219 chr2L 14642576 14642602 chr2L 14651739 14651765 roo 4 9163 0.0 2.5 1.2 1.8 9189 chr2L 14642576 intron osp - chr2L 14647170 intron osp - chr2L 14651765 intron osp - chr2L_4_14645001 chr2L_14645001 RAL-365 220 chr2L 14669804 14669841 chr2L 14669880 14669917 9 76 2.5 2.5 2.5 2.6 113 chr2L 14669804 intron osp - chr2L 14669860 intron osp - chr2L 14669917 intron osp - chr2L_9_14665001 chr2L_14665001 RAL-365 221 chr2L 14707216 14707234 chr2L 14707335 14707353 4 119 3.0 1.5 2.2 1.2 137 chr2L 14707216 intergenic not near genes chr2L 14707284 intergenic not near genes chr2L 14707353 intergenic not near genes chr2L_4_14705001 chr2L_14705001 RAL-365 222 chr2L 14768942 14768952 chr2L 14769019 14769030 4 77 0.0 2.0 1.0 2.0 88 chr2L 14768942 intergenic not near genes chr2L 14768986 intergenic not near genes chr2L 14769030 intergenic not near genes chr2L_4_14765001 chr2L_14765001 RAL-365 223 chr2L 14803880 14803912 chr2L 14809083 14809115 copia 8 5203 1.0 1.5 1.2 3.6 5235 chr2L 14803880 intergenic not near genes chr2L 14806498 intergenic not near genes chr2L 14809115 intergenic not near genes chr2L_8_14805001 chr2L_14805001 RAL-365 224 chr2L 14889951 14889988 chr2L 14890376 14890413 jockey 4 425 1.0 1.5 1.2 1.8 462 chr2L 14889951 intergenic not near genes chr2L 14890182 intergenic not near genes chr2L 14890413 intergenic not near genes chr2L_4_14890001 chr2L_14890001 RAL-365 225 chr2L 14909570 14909597 chr2L 14909648 14909675 6 77 0.5 0.5 0.5 4.0 105 chr2L 14909570 intron CG42313 - chr2L 14909622 intron CG42313 - chr2L 14909675 intron CG42313 - chr2L_6_14905001 chr2L_14905001 RAL-365 226 chr2L 15003545 15003568 chr2L 15003629 15003651 5 84 1.0 0.5 0.8 2.8 106 chr2L 15003545 intergenic not near genes chr2L 15003598 intergenic not near genes chr2L 15003651 intergenic not near genes chr2L_5_15000001 chr2L_15000001 RAL-365 227 chr2L 15044713 15044745 chr2L 15044789 15044821 6 76 0.0 0.0 0.0 6.0 108 chr2L 15044713 intergenic ck - chr2L 15044767 intergenic ck - chr2L 15044821 intergenic ck - chr2L_6_15040001 chr2L_15040001 RAL-365 228 chr2L 15078068 15078100 chr2L 15078156 15078188 4 88 1.5 2.0 1.8 1.4 120 chr2L 15078068 intron CG15270 + chr2L 15078128 intron CG15270 + chr2L 15078188 intron CG15270 + chr2L_4_15075001 chr2L_15075001 RAL-365 229 chr2L 15226371 15226377 chr2L 15226447 15226453 4 76 1.5 1.0 1.2 1.8 82 chr2L 15226371 intergenic not near genes chr2L 15226412 intergenic not near genes chr2L 15226453 intergenic not near genes chr2L_4_15225001 chr2L_15225001 RAL-365 230 chr2L 15332783 15332804 chr2L 15332860 15332881 5 77 3.0 2.0 2.5 1.4 98 chr2L 15332783 intergenic not near genes chr2L 15332832 intergenic not near genes chr2L 15332881 intergenic not near genes chr2L_5_15330001 chr2L_15330001 RAL-365 231 chr2L 15350901 15350929 chr2L 15350985 15351013 6 84 3.0 1.0 2.0 2.0 112 chr2L 15350901 intergenic not near genes chr2L 15350957 intergenic not near genes chr2L 15351013 intergenic not near genes chr2L_6_15350001 chr2L_15350001 RAL-365 232 chr2L 15393263 15393286 chr2L 15393354 15393376 7 90 2.0 3.0 2.5 2.0 113 chr2L 15393263 intergenic not near genes chr2L 15393320 intergenic not near genes chr2L 15393376 intergenic not near genes chr2L_7_15390001 chr2L_15390001 RAL-365 233 chr2L 15403241 15403255 chr2L 15403319 15403332 4 78 2.5 0.0 1.2 1.8 91 chr2L 15403241 intergenic not near genes chr2L 15403286 intergenic not near genes chr2L 15403332 intergenic not near genes chr2L_4_15400001 chr2L_15400001 RAL-365 234 chr2L 15512194 15512210 chr2L 15512601 15512617 4 407 2.5 1.0 1.8 1.4 423 chr2L 15512194 intergenic not near genes chr2L 15512406 intergenic not near genes chr2L 15512617 intergenic not near genes chr2L_4_15510001 chr2L_15510001 RAL-365 235 chr2L 15736587 15736606 chr2L 15736798 15736817 4 211 1.0 2.5 1.8 1.4 230 chr2L 15736587 intron CycE - chr2L 15736702 intron CycE - chr2L 15736817 intron CycE - chr2L_4_15735001 chr2L_15735001 RAL-365 236 chr2L 15831345 15831366 chr2L 15831425 15831444 5 80 1.5 0.5 1.0 2.5 99 chr2L 15831345 intergenic not near genes chr2L 15831394 intergenic not near genes chr2L 15831444 intergenic not near genes chr2L_5_15830001 chr2L_15830001 RAL-365 237 chr2L 15844539 15844566 chr2L 15844616 15844643 7 77 4.5 2.5 3.5 1.6 104 chr2L 15844539 intergenic not near genes chr2L 15844591 intergenic not near genes chr2L 15844643 intergenic not near genes chr2L_7_15840001 chr2L_15840001 RAL-365 238 chr2L 15906180 15906210 chr2L 15906269 15906299 8 89 1.5 1.0 1.2 3.6 119 chr2L 15906180 intron beat-Ib - chr2L 15906240 intron beat-Ib - chr2L 15906299 intron beat-Ib - chr2L_8_15905001 chr2L_15905001 RAL-365 239 chr2L 15956035 15956059 chr2L 15957502 15957526 hobo 7 1467 5.0 4.0 4.5 1.3 1491 chr2L 15956035 intron beat-Ib - chr2L 15956780 intron beat-Ib - chr2L 15957526 intron beat-Ib - chr2L_7_15955001 chr2L_15955001 RAL-365 240 chr2L 16051610 16051633 chr2L 16051689 16051712 9 79 2.5 4.5 3.5 2.0 102 chr2L 16051610 intron beat-Ia + chr2L 16051661 intron beat-Ia + chr2L 16051712 intron beat-Ia + chr2L_9_16050001 chr2L_16050001 RAL-365 241 chr2L 16062280 16062307 chr2L 16062592 16062615 8 312 0.5 0.5 0.5 5.3 335 chr2L 16062280 intron beat-Ia + chr2L 16062448 intron beat-Ia + chr2L 16062615 intron beat-Ia + chr2L_8_16060001 chr2L_16060001 RAL-365 242 chr2L 16071771 16071771 chr2L 16217659 16217660 copia 6 145889 7.5 8.5 8.0 0.7 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_6_16140001 chr2L_16140001 RAL-365 243 chr2L 16141181 16141194 chr2L 16146388 16146401 copia 4 5207 1.0 2.0 1.5 1.6 5220 chr2L 16141181 intergenic not near genes chr2L 16143791 intergenic not near genes chr2L 16146401 intergenic not near genes chr2L_4_16140001 chr2L_16140001 RAL-365 244 chr2L 9084338 9084340 chr2L 16217660 16217660 10 7133320 7.0 8.5 7.8 1.1 7133322 chr2L 9084338 intron Toll-4 + chr2L 12650999 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_10_12650001 chr2L_12650001 RAL-365 245 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 9 145889 7.5 8.5 8.0 1.0 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_9_16140001 chr2L_16140001 RAL-365 246 chr2L 16280267 16280284 chr2L 16281438 16281455 1360 4 1171 2.0 3.0 2.5 1.1 1188 chr2L 16280267 intron crp - chr2L 16280861 intron crp - chr2L 16281455 intron crp - chr2L_4_16280001 chr2L_16280001 RAL-365 247 chr2L 16363944 16363970 chr2L 16364189 16364216 4 246 1.0 0.0 0.5 2.7 272 chr2L 16363944 intergenic not near genes chr2L 16364080 intergenic not near genes chr2L 16364216 intergenic not near genes chr2L_4_16360001 chr2L_16360001 RAL-365 248 chr2L 16448963 16448989 chr2L 16449043 16449073 8 83 3.0 5.0 4.0 1.6 110 chr2L 16448963 5` UTR Idgf2 + chr2L 16449018 5` UTR Idgf2 + chr2L 16449073 5` UTR Idgf2 + chr2L_8_16445001 chr2L_16445001 RAL-365 249 chr2L 16572217 16572242 chr2L 16572310 16572335 4 93 1.0 0.0 0.5 2.7 118 chr2L 16572217 intron CG42389 + chr2L 16572276 intron CG42389 + chr2L 16572335 intron CG42389 + chr2L_4_16570001 chr2L_16570001 RAL-365 250 chr2L 16651715 16651730 chr2L 16651823 16651839 4 109 1.0 2.5 1.8 1.4 124 chr2L 16651715 intron CG42389 + chr2L 16651777 intron CG42389 + chr2L 16651839 intron CG42389 + chr2L_4_16650001 chr2L_16650001 RAL-365 251 chr2L 16670420 16670435 chr2L 16670497 16670512 4 77 0.5 0.0 0.2 3.3 92 chr2L 16670420 intron Trpgamma - chr2L 16670466 intron Trpgamma - chr2L 16670512 intron Trpgamma - chr2L_4_16670001 chr2L_16670001 RAL-365 252 chr2L 16738704 16738729 chr2L 16738897 16738920 7 193 6.5 6.5 6.5 0.9 216 chr2L 16738704 intergenic ChLD3 +,glu - chr2L 16738812 intergenic ChLD3 +,glu - chr2L 16738920 5` UTR ChLD3 + chr2L_7_16735001 chr2L_16735001 RAL-365 253 chr2L 16736492 16736503 chr2L 16743697 16743708 5 7206 18.5 10.5 14.5 0.3 7216 chr2L 16736492 exon glu - chr2L 16740100 intron ChLD3 + chr2L 16743708 intron CG17912 + chr2L_5_16740001 chr2L_16740001 RAL-365 254 chr2L 16818830 16818859 chr2L 16818906 16818935 6 76 0.0 0.0 0.0 6.0 105 chr2L 16818830 intron,intron CG13280 -,mdy + chr2L 16818882 intron,intron CG13280 -,mdy + chr2L 16818935 intron,intron CG13280 -,mdy + chr2L_6_16815001 chr2L_16815001 RAL-365 255 chr2L 16841016 16841026 chr2L 16841092 16841102 4 76 2.0 1.0 1.5 1.6 86 chr2L 16841016 intron,intron SclA +,SclB + chr2L 16841059 intron,intron SclA +,SclB + chr2L 16841102 intron,intron SclA +,SclB + chr2L_4_16840001 chr2L_16840001 RAL-365 256 chr2L 16850544 16850580 chr2L 16850641 16850674 4 96 0.0 1.0 0.5 2.7 130 chr2L 16850544 intron CG31810 - chr2L 16850609 intron CG31810 - chr2L 16850674 intron CG31810 - chr2L_4_16850001 chr2L_16850001 RAL-365 257 chr2L 16958106 16958114 chr2L 16962894 16962902 Doc 4 4788 3.0 0.5 1.8 1.4 4796 chr2L 16958106 intergenic not near genes chr2L 16960504 intergenic not near genes chr2L 16962902 intergenic not near genes chr2L_4_16960001 chr2L_16960001 RAL-365 258 chr2L 17000119 17000153 chr2L 17000241 17000275 8 122 1.5 0.5 1.0 4.0 156 chr2L 17000119 intergenic not near genes chr2L 17000197 intergenic not near genes chr2L 17000275 intergenic not near genes chr2L_8_17000001 chr2L_17000001 RAL-365 259 chr2L 17103015 17103039 chr2L 17103103 17103127 4 88 2.0 3.5 2.8 1.1 112 chr2L 17103015 intergenic not near genes chr2L 17103071 intergenic not near genes chr2L 17103127 intergenic not near genes chr2L_4_17100001 chr2L_17100001 RAL-365 260 chr2L 17168194 17168223 chr2L 17168972 17169001 6 778 0.0 2.5 1.2 2.7 807 chr2L 17168194 intron,intron CG34106 +,beat-IIIa + chr2L 17168598 intron,intron CG34106 +,beat-IIIa + chr2L 17169001 intron,intron CG34106 +,beat-IIIa + chr2L_6_17165001 chr2L_17165001 RAL-365 261 chr2L 17273190 17273217 chr2L 17277973 17278000 F-element 8 4783 2.0 1.0 1.5 3.2 4810 chr2L 17273190 intergenic not near genes chr2L 17275595 intergenic not near genes chr2L 17278000 intergenic not near genes chr2L_8_17275001 chr2L_17275001 RAL-365 262 chr2L 17287250 17287255 chr2L 17287333 17287338 5 83 5.5 4.5 5.0 0.8 88 chr2L 17287250 exon CG15140 + chr2L 17287294 exon CG15140 + chr2L 17287338 exon CG15140 + chr2L_5_17285001 chr2L_17285001 RAL-365 263 chr2L 17327913 17327923 chr2L 17327998 17328009 4 86 3.0 3.0 3.0 1.0 96 chr2L 17327913 intergenic not near genes chr2L 17327961 intergenic not near genes chr2L 17328009 intergenic not near genes chr2L_4_17325001 chr2L_17325001 RAL-365 264 chr2L 17424709 17424738 chr2L 17424821 17424850 5 112 0.0 1.0 0.5 3.3 141 chr2L 17424709 intron Dif - chr2L 17424780 intron Dif - chr2L 17424850 intron Dif - chr2L_5_17420001 chr2L_17420001 RAL-365 265 chr2L 17637112 17637127 chr2L 17637189 17637204 8 76 0.5 1.5 1.0 4.0 92 chr2L 17637112 intergenic not near genes chr2L 17637158 intergenic not near genes chr2L 17637204 intergenic not near genes chr2L_8_17635001 chr2L_17635001 RAL-365 266 chr2L 17796028 17796045 chr2L 17796109 17796126 4 81 0.5 1.5 1.0 2.0 98 chr2L 17796028 intron CadN2 - chr2L 17796077 intron CadN2 - chr2L 17796126 intron CadN2 - chr2L_4_17795001 chr2L_17795001 RAL-365 267 chr2L 17819935 17819953 chr2L 17825138 17825156 copia 5 5203 0.5 0.0 0.2 4.2 5221 chr2L 17819935 intron CadN2 - chr2L 17822546 intron CadN2 - chr2L 17825156 intron CadN2 - chr2L_5_17820001 chr2L_17820001 RAL-365 268 chr2L 17938690 17938705 chr2L 17938776 17938791 6 86 2.5 0.0 1.2 2.7 101 chr2L 17938690 intergenic CR44399 - chr2L 17938740 intergenic CR44399 - chr2L 17938791 intergenic CR44399 - chr2L_6_17935001 chr2L_17935001 RAL-365 269 chr2L 17943887 17944140 chr2L 17943990 17944218 8 96 0.5 1.0 0.8 4.4 331 chr2L 17943887 intergenic not near genes chr2L 17944052 intergenic not near genes chr2L 17944218 intergenic not near genes chr2L_8_17940001 chr2L_17940001 RAL-365 270 chr2L 17951943 17951979 chr2L 17953410 17953446 hobo 7 1467 0.5 5.0 2.8 1.8 1503 chr2L 17951943 intergenic CR44398 -,CR44397 - chr2L 17952694 intergenic not near genes chr2L 17953446 intergenic not near genes chr2L_7_17950001 chr2L_17950001 RAL-365 271 chr2L 18051873 18051909 chr2L 18061020 18061056 roo 4 9146 1.0 2.5 1.8 1.4 9183 chr2L 18051873 intron rdo + chr2L 18056464 intron rdo + chr2L 18061056 intron rdo + chr2L_4_18055001 chr2L_18055001 RAL-365 272 chr2L 18090673 18090704 chr2L 18090760 18090791 7 87 2.0 1.0 1.5 2.8 118 chr2L 18090673 intergenic CG15153 - chr2L 18090732 intergenic CG15153 - chr2L 18090791 3` UTR CG15153 - chr2L_7_18090001 chr2L_18090001 RAL-365 273 chr2L 18111244 18111264 chr2L 18111335 18111355 5 91 2.5 1.5 2.0 1.7 111 chr2L 18111244 intergenic not near genes chr2L 18111300 intergenic not near genes chr2L 18111355 intergenic not near genes chr2L_5_18110001 chr2L_18110001 RAL-365 274 chr2L 18145248 18145268 chr2L 18145327 18145347 5 79 4.5 2.0 3.2 1.2 99 chr2L 18145248 intron,5` UTR Socs36E -,CR44478 + chr2L 18145298 intron,5` UTR Socs36E -,CR44478 + chr2L 18145347 intron,5` UTR Socs36E -,CR44478 + chr2L_5_18145001 chr2L_18145001 RAL-365 275 chr2L 18218613 18218633 chr2L 18218701 18218721 6 88 0.0 1.5 0.8 3.3 108 chr2L 18218613 intron CG42750 - chr2L 18218667 intron CG42750 - chr2L 18218721 intron CG42750 - chr2L_6_18215001 chr2L_18215001 RAL-365 276 chr2L 18239960 18239971 chr2L 18240043 18240054 5 83 4.5 0.0 2.2 1.6 94 chr2L 18239960 intron CG42750 - chr2L 18240007 intron CG42750 - chr2L 18240054 intron CG42750 - chr2L_5_18240001 chr2L_18240001 RAL-365 277 chr2L 18306766 18306794 chr2L 18307122 18307151 11 357 0.5 0.5 0.5 7.3 385 chr2L 18306766 intergenic not near genes chr2L 18306958 intergenic not near genes chr2L 18307151 intergenic not near genes chr2L_11_18305001 chr2L_18305001 RAL-365 278 chr2L 18334619 18334645 chr2L 18334704 18334730 6 85 2.0 1.5 1.8 2.1 111 chr2L 18334619 intron Fas3 + chr2L 18334674 intron Fas3 + chr2L 18334730 intron Fas3 + chr2L_6_18330001 chr2L_18330001 RAL-365 279 chr2L 18423854 18423867 chr2L 18423945 18423958 4 91 1.5 2.0 1.8 1.4 104 chr2L 18423854 intergenic not near genes chr2L 18423906 intergenic not near genes chr2L 18423958 intergenic not near genes chr2L_4_18420001 chr2L_18420001 RAL-365 280 chr2L 18525503 18525528 chr2L 18525699 18525723 8 195 1.0 1.5 1.2 3.6 220 chr2L 18525503 intron CG10211 + chr2L 18525613 intron CG10211 + chr2L 18525723 intron CG10211 + chr2L_8_18525001 chr2L_18525001 RAL-365 281 chr2L 16217660 16217660 chr2L 18622718 18622719 9 2405058 8.5 14.5 11.5 0.7 2405059 chr2L 16217660 intergenic not near genes chr2L 17420190 intron Dif - chr2L 18622719 intron MESR3 + chr2L_9_17420001 chr2L_17420001 RAL-365 282 chr2L 18745140 18745171 chr2L 18745227 18745256 6 86 1.5 1.5 1.5 2.4 116 chr2L 18745140 intergenic not near genes chr2L 18745198 intergenic not near genes chr2L 18745256 intergenic not near genes chr2L_6_18745001 chr2L_18745001 RAL-365 283 chr2L 18876868 18876884 chr2L 18876946 18876962 6 78 2.0 1.5 1.8 2.1 94 chr2L 18876868 intron tup - chr2L 18876915 intron tup - chr2L 18876962 intron tup - chr2L_6_18875001 chr2L_18875001 RAL-365 284 chr2L 18902634 18902657 chr2L 18902915 18902937 5 281 0.0 1.0 0.5 3.3 303 chr2L 18902634 intergenic not near genes chr2L 18902786 intergenic not near genes chr2L 18902937 intergenic not near genes chr2L_5_18900001 chr2L_18900001 RAL-365 285 chr2L 19147374 19147400 chr2L 19154408 19154435 297 5 7035 4.0 2.0 3.0 1.2 7061 chr2L 19147374 intron brat + chr2L 19150904 intron brat + chr2L 19154435 intron brat + chr2L_5_19150001 chr2L_19150001 RAL-365 286 chr2L 19241058 19241088 chr2L 19241137 19241166 4 78 2.0 2.5 2.2 1.2 108 chr2L 19241058 intergenic not near genes chr2L 19241112 intergenic not near genes chr2L 19241166 intergenic not near genes chr2L_4_19240001 chr2L_19240001 RAL-365 287 chr2L 19305609 19305633 chr2L 19305715 19305739 8 106 0.5 2.0 1.2 3.6 130 chr2L 19305609 intergenic not near genes chr2L 19305674 intergenic not near genes chr2L 19305739 intergenic not near genes chr2L_8_19305001 chr2L_19305001 RAL-365 288 chr2L 19309631 19309652 chr2L 19309711 19309732 8 80 0.5 3.5 2.0 2.7 101 chr2L 19309631 intergenic not near genes chr2L 19309682 intergenic not near genes chr2L 19309732 intergenic not near genes chr2L_8_19305001 chr2L_19305001 RAL-365 289 chr2L 19331670 19331695 chr2L 19331749 19331773 4 78 1.0 2.5 1.8 1.4 103 chr2L 19331670 intergenic not near genes chr2L 19331722 intergenic not near genes chr2L 19331773 intergenic not near genes chr2L_4_19330001 chr2L_19330001 RAL-365 290 chr2L 19340204 19340221 chr2L 19340281 19340298 5 77 2.5 4.5 3.5 1.1 94 chr2L 19340204 exon dnt - chr2L 19340251 exon dnt - chr2L 19340298 exon dnt - chr2L_5_19340001 chr2L_19340001 RAL-365 291 chr2L 19357556 19357567 chr2L 19357645 19357657 8 90 1.0 3.5 2.2 2.5 101 chr2L 19357556 intron dnt - chr2L 19357606 intron dnt - chr2L 19357657 intron dnt - chr2L_8_19355001 chr2L_19355001 RAL-365 292 chr2L 19378348 19378367 chr2L 19378430 19378450 5 83 2.5 3.0 2.8 1.3 102 chr2L 19378348 intergenic not near genes chr2L 19378399 intergenic not near genes chr2L 19378450 intergenic not near genes chr2L_5_19375001 chr2L_19375001 RAL-365 293 chr2L 19383992 19384014 chr2L 19384093 19384114 6 99 3.5 2.5 3.0 1.5 122 chr2L 19383992 exon fon - chr2L 19384053 exon fon - chr2L 19384114 exon fon - chr2L_6_19380001 chr2L_19380001 RAL-365 294 chr2L 19486884 19486906 chr2L 19486963 19486985 5 79 1.5 0.5 1.0 2.5 101 chr2L 19486884 intergenic CG13084 + chr2L 19486934 intergenic CG13084 + chr2L 19486985 intergenic CG13084 + chr2L_5_19485001 chr2L_19485001 RAL-365 295 chr2L 19559404 19559413 chr2L 19559480 19559488 4 76 0.0 0.0 0.0 4.0 84 chr2L 19559404 exon Tep5 + chr2L 19559446 exon Tep5 + chr2L 19559488 exon Tep5 + chr2L_4_19555001 chr2L_19555001 RAL-365 296 chr2L 19560005 19560034 chr2L 19560258 19560286 6 251 1.5 3.0 2.2 1.9 281 chr2L 19560005 exon Tep5 + chr2L 19560146 exon Tep5 + chr2L 19560286 intron Tep5 + chr2L_6_19560001 chr2L_19560001 RAL-365 297 chr2L 19630980 19630988 chr2L 19631551 19631559 4 570 2.0 3.0 2.5 1.1 579 chr2L 19630980 intron Lar + chr2L 19631270 intron Lar + chr2L 19631559 intron Lar + chr2L_4_19630001 chr2L_19630001 RAL-365 298 chr2L 19638546 19638570 chr2L 19638634 19638658 5 88 3.0 4.5 3.8 1.0 112 chr2L 19638546 intron Lar + chr2L 19638602 intron Lar + chr2L 19638658 intron Lar + chr2L_5_19635001 chr2L_19635001 RAL-365 299 chr2L 19652577 19652600 chr2L 19674013 19674036 opus 4 21436 1.5 3.0 2.2 1.2 21459 chr2L 19652577 intron Lar + chr2L 19663306 intron Lar + chr2L 19674036 intron Lar + chr2L_4_19660001 chr2L_19660001 RAL-365 300 chr2L 19703543 19703570 chr2L 19712679 19712706 roo 8 9136 3.5 2.5 3.0 2.0 9163 chr2L 19703543 intron Lar + chr2L 19708124 intron Lar + chr2L 19712706 intron Lar + chr2L_8_19705001 chr2L_19705001 RAL-365 301 chr2L 19737357 19737382 chr2L 19740825 19740851 1360 6 3469 1.5 3.0 2.2 1.9 3494 chr2L 19737357 intergenic Nf-YB + chr2L 19739104 intergenic not near genes chr2L 19740851 intergenic not near genes chr2L_6_19735001 chr2L_19735001 RAL-365 302 chr2L 19754875 19754905 chr2L 19754959 19754989 8 83 0.0 2.0 1.0 4.0 114 chr2L 19754875 intron CG10631 - chr2L 19754932 intron CG10631 - chr2L 19754989 intron CG10631 - chr2L_8_19750001 chr2L_19750001 RAL-365 303 chr2L 19821794 19821821 chr2L 19821871 19821898 5 77 2.0 3.0 2.5 1.4 104 chr2L 19821794 intron sick + chr2L 19821846 intron sick + chr2L 19821898 intron sick + chr2L_5_19820001 chr2L_19820001 RAL-365 304 chr2L 19823266 19823291 chr2L 19823347 19823380 5 84 3.0 0.0 1.5 2.0 114 chr2L 19823266 intron sick + chr2L 19823323 intron sick + chr2L 19823380 intron sick + chr2L_5_19820001 chr2L_19820001 RAL-365 305 chr2L 19898961 19898993 chr2L 19899101 19899133 9 140 2.0 1.0 1.5 3.6 172 chr2L 19898961 intron sick + chr2L 19899047 intron sick + chr2L 19899133 intron sick + chr2L_9_19895001 chr2L_19895001 RAL-365 306 chr2L 20079518 20079545 chr2L 20079639 20079665 13 121 1.0 2.0 1.5 5.2 147 chr2L 20079518 intron,intron neb +,fok - chr2L 20079592 intron,intron neb +,fok - chr2L 20079665 intron,intron neb +,fok - chr2L_13_20075001 chr2L_20075001 RAL-365 307 chr2L 20272124 20272138 chr2L 20282835 20282848 copia 6 10710 3.5 4.5 4.0 1.2 10724 chr2L 20272124 intergenic not near genes chr2L 20277486 intergenic not near genes chr2L 20282848 intergenic not near genes chr2L_6_20275001 chr2L_20275001 RAL-365 308 chr2L 20296515 20296535 chr2L 20296594 20296616 4 80 0.5 2.5 1.5 1.6 101 chr2L 20296515 intergenic CR43414 - chr2L 20296566 intergenic CR43414 - chr2L 20296616 intergenic CR43414 - chr2L_4_20295001 chr2L_20295001 RAL-365 309 chr2L 20303162 20303183 chr2L 20310630 20310651 blood 5 7468 0.5 1.0 0.8 2.8 7489 chr2L 20303162 intergenic not near genes chr2L 20306906 intergenic not near genes chr2L 20310651 intergenic not near genes chr2L_5_20305001 chr2L_20305001 RAL-365 310 chr2L 20310890 20310922 chr2L 20310969 20311001 5 79 1.0 2.5 1.8 1.8 111 chr2L 20310890 intergenic spir + chr2L 20310946 intergenic spir + chr2L 20311001 intergenic spir + chr2L_5_20310001 chr2L_20310001 RAL-365 311 chr2L 20549132 20549149 chr2L 20549214 20549231 5 82 1.0 2.5 1.8 1.8 99 chr2L 20549132 intergenic not near genes chr2L 20549182 intergenic not near genes chr2L 20549231 intergenic not near genes chr2L_5_20545001 chr2L_20545001 RAL-365 312 chr2L 20553187 20553220 chr2L 20553263 20553296 7 75 1.0 3.0 2.0 2.3 109 chr2L 20553187 intergenic not near genes chr2L 20553242 intergenic not near genes chr2L 20553296 intergenic not near genes chr2L_7_20550001 chr2L_20550001 RAL-365 313 chr2L 20568666 20568685 chr2L 20569056 20569075 X-element 6 390 2.5 1.5 2.0 2.0 409 chr2L 20568666 intron CR45347 + chr2L 20568870 intron CR45347 + chr2L 20569075 intron CR45347 + chr2L_6_20565001 chr2L_20565001 RAL-365 314 chr2L 20576220 20576240 chr2L 20583688 20583709 blood 5 7469 5.0 3.5 4.2 1.0 7489 chr2L 20576220 intergenic CR45347 + chr2L 20579964 intergenic not near genes chr2L 20583709 3` UTR CR44909 - chr2L_5_20575001 chr2L_20575001 RAL-365 315 chr2L 20607638 20607656 chr2L 20607717 20607734 5 78 1.0 2.5 1.8 1.8 96 chr2L 20607638 intron,3` UTR CR44909 -,CR43608 - chr2L 20607686 intron,3` UTR CR44909 -,CR43608 - chr2L 20607734 intron,3` UTR CR44909 -,CR43608 - chr2L_5_20605001 chr2L_20605001 RAL-365 316 chr2L 20639516 20639532 chr2L 20639792 20639807 INE-1 4 275 0.0 4.5 2.2 1.2 291 chr2L 20639516 intergenic not near genes chr2L 20639662 intergenic CG31680 + chr2L 20639807 intergenic CG31680 + chr2L_4_20635001 chr2L_20635001 RAL-365 317 chr2L 20668687 20668721 chr2L 20668763 20668797 4 76 0.5 1.0 0.8 2.2 110 chr2L 20668687 intron CG31678 - chr2L 20668742 intron CG31678 - chr2L 20668797 intron CG31678 - chr2L_4_20665001 chr2L_20665001 RAL-365 318 chr2L 20826520 20826546 chr2L 20826600 20826626 6 80 1.5 2.5 2.0 2.0 106 chr2L 20826520 intron CG9331 + chr2L 20826573 intron CG9331 + chr2L 20826626 intron CG9331 + chr2L_6_20825001 chr2L_20825001 RAL-365 319 chr2L 20835822 20835831 chr2L 20836539 20836548 Quasimodo 4 717 2.0 2.5 2.2 1.2 726 chr2L 20835822 5` UTR Oseg5 - chr2L 20836185 intergenic Oseg5 -,Spn38F - chr2L 20836548 intergenic Spn38F - chr2L_4_20835001 chr2L_20835001 RAL-365 320 chr2L 20840030 20840056 chr2L 20840242 20840268 6 212 2.5 1.0 1.8 2.1 238 chr2L 20840030 intergenic not near genes chr2L 20840149 intergenic not near genes chr2L 20840268 intergenic CG31676 + chr2L_6_20840001 chr2L_20840001 RAL-365 321 chr2L 20846763 20846772 chr2L 20846847 20846856 5 84 1.5 1.5 1.5 2.0 93 chr2L 20846763 intron CG31676 + chr2L 20846810 intron CG31676 + chr2L 20846856 intron CG31676 + chr2L_5_20845001 chr2L_20845001 RAL-365 322 chr2L 20911027 20911060 chr2L 20911103 20911136 10 76 4.0 0.5 2.2 3.1 109 chr2L 20911027 intron,intron CG43739 -,sky - chr2L 20911082 intron,intron CG43739 -,sky - chr2L 20911136 intron,intron CG43739 -,sky - chr2L_10_20910001 chr2L_20910001 RAL-365 323 chr2L 20946946 20946960 chr2L 20947033 20947047 5 87 1.5 0.0 0.8 2.8 101 chr2L 20946946 intergenic CR44606 - chr2L 20946996 intergenic CR44606 - chr2L 20947047 intergenic CR44606 - chr2L_5_20945001 chr2L_20945001 RAL-365 324 chr2L 20967086 20967102 chr2L 20967172 20967188 5 86 1.0 1.5 1.2 2.3 102 chr2L 20967086 3` UTR CG42238 - chr2L 20967137 3` UTR CG42238 - chr2L 20967188 3` UTR CG42238 - chr2L_5_20965001 chr2L_20965001 RAL-365 325 chr2L 20976641 20976667 chr2L 20981456 20981482 X-element 9 4815 1.0 2.0 1.5 3.6 4841 chr2L 20976641 intron CG42238 - chr2L 20979062 intron CG42238 - chr2L 20981482 intron CG42238 - chr2L_9_20975001 chr2L_20975001 RAL-365 326 chr2L 20991047 20991067 chr2L 20991125 20991145 7 78 3.0 2.5 2.8 1.8 98 chr2L 20991047 intron CG42238 - chr2L 20991096 intron CG42238 - chr2L 20991145 intron CG42238 - chr2L_7_20990001 chr2L_20990001 RAL-365 327 chr2L 21019332 21019348 chr2L 21019452 21019469 5 120 4.0 1.0 2.5 1.4 137 chr2L 21019332 intron CG42238 - chr2L 21019400 intron CG42238 - chr2L 21019469 intron CG42238 - chr2L_5_21015001 chr2L_21015001 RAL-365 328 chr2L 21020280 21020308 chr2L 21023957 21023984 NOF 7 3677 1.5 1.0 1.2 3.2 3704 chr2L 21020280 intron CG42238 - chr2L 21022132 intron CG42238 - chr2L 21023984 intron CG42238 - chr2L_7_21020001 chr2L_21020001 RAL-365 329 chr2L 21041136 21041165 chr2L 21049397 21049426 Tirant 9 8260 3.5 1.5 2.5 2.6 8290 chr2L 21041136 intron CG42238 - chr2L 21045281 intron CG42238 - chr2L 21049426 intron CG42238 - chr2L_9_21045001 chr2L_21045001 RAL-365 330 chr2L 21074921 21074946 chr2L 21075012 21075037 5 91 1.5 1.0 1.2 2.3 116 chr2L 21074921 intergenic tadr + chr2L 21074979 intergenic tadr + chr2L 21075037 intergenic tadr + chr2L_5_21070001 chr2L_21070001 RAL-365 331 chr2L 21086439 21086453 chr2L 21086554 21086561 4 113 1.5 4.5 3.0 1.0 122 chr2L 21086439 5` UTR CG33509 - chr2L 21086500 5` UTR CG33509 - chr2L 21086561 intergenic CG33509 -,ppk13 - chr2L_4_21085001 chr2L_21085001 RAL-365 332 chr2L 21088920 21088950 chr2L 21089000 21089033 4 81 1.0 1.5 1.2 1.8 113 chr2L 21088920 intergenic ppk13 -,CG9259 + chr2L 21088976 intergenic ppk13 -,CG9259 + chr2L 21089033 intergenic ppk13 -,CG9259 + chr2L_4_21085001 chr2L_21085001 RAL-365 333 chr2L 21158876 21158914 chr2L 21158953 21158991 13 77 2.5 0.5 1.5 5.2 115 chr2L 21158876 intergenic CG9248 +,CG9249 - chr2L 21158934 5` UTR CG9248 + chr2L 21158991 5` UTR CG9248 + chr2L_13_21155001 chr2L_21155001 RAL-365 334 chr2L 21245282 21245302 chr2L 21245523 21245540 5 240 0.0 3.5 1.8 1.8 258 chr2L 21245282 intron Hr39 + chr2L 21245411 intron Hr39 + chr2L 21245540 intron Hr39 + chr2L_5_21245001 chr2L_21245001 RAL-365 335 chr2L 21286605 21286630 chr2L 21286682 21286708 4 78 1.0 1.0 1.0 2.0 103 chr2L 21286605 exon Mio - chr2L 21286656 intron Mio - chr2L 21286708 intron Mio - chr2L_4_21285001 chr2L_21285001 RAL-365 336 chr2L 21347557 21347583 chr2L 21355029 21355055 blood 5 7472 1.5 1.0 1.2 2.3 7498 chr2L 21347557 intron Tsp39D + chr2L 21351306 intron Tsp39D + chr2L 21355055 intron Tsp39D + chr2L_5_21350001 chr2L_21350001 RAL-365 337 chr2L 21754672 21754683 chr2L 21754753 21754764 4 81 1.5 1.0 1.2 1.8 92 chr2L 21754672 intron step - chr2L 21754718 intron step - chr2L 21754764 intron step - chr2L_4_21750001 chr2L_21750001 RAL-365 338 chr2L 21771982 21772013 chr2L 21772061 21772092 7 79 0.5 1.5 1.0 3.5 110 chr2L 21771982 intron CG31612 - chr2L 21772037 intron CG31612 - chr2L 21772092 intron CG31612 - chr2L_7_21770001 chr2L_21770001 RAL-365 339 chr2L 22037382 22037396 chr2L 22037684 22037697 INE-1 4 302 1.5 1.5 1.5 1.6 315 chr2L 22037382 intergenic CG41434 + chr2L 22037540 intergenic CG41434 + chr2L 22037697 intergenic CG41434 + chr2L_4_22035001 chr2L_22035001 RAL-365 340 chr2L 22077300 22077315 chr2L 22077381 22077396 4 81 2.0 1.0 1.5 1.6 96 chr2L 22077300 intergenic not near genes chr2L 22077348 intergenic not near genes chr2L 22077396 intergenic not near genes chr2L_4_22075001 chr2L_22075001 RAL-365 341 chr2L 22548922 22548940 chr2L 22550147 22550165 1360 4 1225 0.0 4.0 2.0 1.3 1243 chr2L 22548922 intergenic CG17490 + chr2L 22549544 intergenic not near genes chr2L 22550165 intergenic CG17493 + chr2L_4_22545001 chr2L_22545001 RAL-365 342 chr2L 22558138 22558169 chr2L 22558214 22558245 6 76 1.0 1.5 1.2 2.7 107 chr2L 22558138 intergenic not near genes chr2L 22558192 intergenic not near genes chr2L 22558245 intergenic not near genes chr2L_6_22555001 chr2L_22555001 RAL-365 343 chr2L 22558394 22558424 chr2L 22558705 22558735 7 311 1.5 1.0 1.2 3.2 341 chr2L 22558394 intergenic not near genes chr2L 22558564 intergenic not near genes chr2L 22558735 intergenic not near genes chr2L_7_22555001 chr2L_22555001 RAL-365 344 chr2L 22581981 22581999 chr2L 22583770 22583788 S-element 5 1789 0.0 1.0 0.5 3.3 1807 chr2L 22581981 intron CG17494 + chr2L 22582884 intron CG17494 + chr2L 22583788 intron CG17494 + chr2L_5_22580001 chr2L_22580001 RAL-365 345 chr2L 22719443 22719467 chr2L 22727566 22727590 gypsy2 6 8123 1.5 1.0 1.2 2.7 8147 chr2L 22719443 intron CG40006 - chr2L 22723516 intron CG40006 - chr2L 22727590 intron CG40006 - chr2L_6_22720001 chr2L_22720001 RAL-365 346 chr2L 22941251 22941281 chr2L 22941332 22941363 6 82 0.5 1.5 1.0 3.0 112 chr2L 22941251 3` UTR lt + chr2L 22941307 3` UTR lt + chr2L 22941363 3` UTR lt + chr2L_6_22940001 chr2L_22940001 RAL-365 347 chr2L 23006504 23006532 chr2L 23007180 23007208 Osvaldo 6 676 3.0 2.0 2.5 1.7 704 chr2L 23006504 intron Cht3 - chr2L 23006856 intron Cht3 - chr2L 23007208 intron Cht3 - chr2L_6_23005001 chr2L_23005001 RAL-365 348 chr2R 469959 469981 chr2R 473200 473221 F-element 5 3240 2.5 0.5 1.5 2.0 3262 chr2R 469959 intergenic not near genes chr2R 471590 intergenic not near genes chr2R 473221 intergenic not near genes chr2R_5_470001 chr2R_470001 RAL-365 349 chr2R 529321 529355 chr2R 537946 537980 Max-element 15 8625 2.5 5.0 3.8 3.1 8659 chr2R 529321 intron CG40378 + chr2R 533650 intron CG40378 + chr2R 537980 intron CG40378 + chr2R_15_530001 chr2R_530001 RAL-365 350 chr2R 1732856 1732880 chr2R 1733003 1733027 5 147 2.0 1.0 1.5 2.0 171 chr2R 1732856 intron CG41520 + chr2R 1732942 intron CG41520 + chr2R 1733027 intron CG41520 + chr2R_5_1730001 chr2R_1730001 RAL-365 351 chr2R 2498985 2499005 chr2R 2508132 2508152 roo 4 9146 2.5 1.5 2.0 1.3 9167 chr2R 2498985 intron MFS17 - chr2R 2503568 intron MFS17 - chr2R 2508152 intron MFS17 - chr2R_4_2500001 chr2R_2500001 RAL-365 352 chr2R 4247801 4247835 chr2R 4247887 4247919 4 85 1.0 2.5 1.8 1.4 118 chr2R 4247801 intergenic not near genes chr2R 4247860 intergenic not near genes chr2R 4247919 intergenic not near genes chr2R_4_4245001 chr2R_4245001 RAL-365 353 chr2R 4508165 4508194 chr2R 4508246 4508275 7 81 1.5 2.0 1.8 2.5 110 chr2R 4508165 intron CR44100 + chr2R 4508220 5` UTR CR44100 + chr2R 4508275 5` UTR CR44100 + chr2R_7_4505001 chr2R_4505001 RAL-365 354 chr2R 4933355 4933391 chr2R 4933919 4933955 9 564 2.5 2.0 2.2 2.8 600 chr2R 4933355 intron Ir41a + chr2R 4933655 intron Ir41a + chr2R 4933955 intron Ir41a + chr2R_9_4930001 chr2R_4930001 RAL-365 355 chr2R 5237351 5237371 chr2R 5237433 5237453 7 82 2.5 0.0 1.2 3.2 102 chr2R 5237351 intron Nipped-A - chr2R 5237402 intron Nipped-A - chr2R 5237453 intron Nipped-A - chr2R_7_5235001 chr2R_5235001 RAL-365 356 chr2R 5417994 5418022 chr2R 5420626 5420654 Burdock 8 2632 3.0 2.0 2.5 2.3 2660 chr2R 5417994 intron laccase2 + chr2R 5419324 intron laccase2 + chr2R 5420654 intron laccase2 + chr2R_8_5415001 chr2R_5415001 RAL-365 357 chr2R 5476354 5476381 chr2R 5476896 5476925 9 543 1.0 1.0 1.0 4.5 571 chr2R 5476354 intron CG30440 - chr2R 5476640 intron CG30440 - chr2R 5476925 intron CG30440 - chr2R_9_5475001 chr2R_5475001 RAL-365 358 chr2R 5484876 5484890 chr2R 5484963 5484977 8 87 0.0 1.0 0.5 5.3 101 chr2R 5484876 intron CG30440 - chr2R 5484926 intron CG30440 - chr2R 5484977 intron CG30440 - chr2R_8_5480001 chr2R_5480001 RAL-365 359 chr2R 5515992 5516027 chr2R 5516335 5516370 5 343 1.0 1.5 1.2 2.3 378 chr2R 5515992 intron CG30438 + chr2R 5516181 intron CG30438 + chr2R 5516370 intron CG30438 + chr2R_5_5515001 chr2R_5515001 RAL-365 360 chr2R 5639112 5639121 chr2R 5644062 5644071 4 4950 8.0 6.0 7.0 0.5 4959 chr2R 5639112 intergenic not near genes chr2R 5641592 3` UTR CG11665 - chr2R 5644071 intron CG11665 - chr2R_4_5640001 chr2R_5640001 RAL-365 361 chr2R 5664284 5664314 chr2R 5664363 5664394 9 80 2.5 2.5 2.5 2.6 110 chr2R 5664284 5` UTR CR45472 + chr2R 5664339 intron CR45472 + chr2R 5664394 intron CR45472 + chr2R_9_5660001 chr2R_5660001 RAL-365 362 chr2R 5869274 5869309 chr2R 5874350 5874385 flea 13 5076 1.5 1.0 1.2 5.9 5111 chr2R 5869274 intergenic not near genes chr2R 5871830 intergenic not near genes chr2R 5874385 intergenic not near genes chr2R_13_5870001 chr2R_5870001 RAL-365 363 chr2R 5876870 5876904 chr2R 5876971 5877004 11 102 2.0 1.5 1.8 3.9 134 chr2R 5876870 intergenic not near genes chr2R 5876937 intergenic not near genes chr2R 5877004 intergenic not near genes chr2R_11_5875001 chr2R_5875001 RAL-365 364 chr2R 5878926 5878957 chr2R 5879006 5879037 7 80 1.0 1.5 1.2 3.2 111 chr2R 5878926 intergenic CG44438 - chr2R 5878982 intergenic CG44438 - chr2R 5879037 intergenic CG44438 - chr2R_7_5875001 chr2R_5875001 RAL-365 365 chr2R 6025021 6025188 chr2R 6025139 6025396 4 140 0.5 0.5 0.5 2.7 375 chr2R 6025021 intergenic not near genes chr2R 6025208 intergenic not near genes chr2R 6025396 intergenic not near genes chr2R_4_6025001 chr2R_6025001 RAL-365 366 chr2R 6033443 6033474 chr2R 6033528 6033559 6 84 2.0 1.0 1.5 2.4 116 chr2R 6033443 intron SCAP - chr2R 6033501 intron SCAP - chr2R 6033559 intron SCAP - chr2R_6_6030001 chr2R_6030001 RAL-365 367 chr2R 6065749 6065783 chr2R 6065860 6065895 18 111 2.0 1.5 1.8 6.4 146 chr2R 6065749 intron CCHa2-R + chr2R 6065822 intron CCHa2-R + chr2R 6065895 exon CCHa2-R + chr2R_18_6065001 chr2R_6065001 RAL-365 368 chr2R 6096716 6096750 chr2R 6101914 6101948 BS 9 5198 3.5 1.5 2.5 2.6 5232 chr2R 6096716 intron EcR - chr2R 6099332 intron EcR - chr2R 6101948 intron EcR - chr2R_9_6095001 chr2R_6095001 RAL-365 369 chr2R 6129325 6129354 chr2R 6129403 6129432 6 77 1.0 0.5 0.8 3.3 107 chr2R 6129325 intron EcR - chr2R 6129378 intron EcR - chr2R 6129432 intron EcR - chr2R_6_6125001 chr2R_6125001 RAL-365 370 chr2R 6178125 6178145 chr2R 6178251 6178271 6 126 1.0 2.0 1.5 2.4 146 chr2R 6178125 intergenic not near genes chr2R 6178198 intergenic not near genes chr2R 6178271 intergenic not near genes chr2R_6_6175001 chr2R_6175001 RAL-365 371 chr2R 6494523 6494552 chr2R 6499285 6499314 F-element 5 4762 1.5 0.0 0.8 2.8 4791 chr2R 6494523 intergenic not near genes chr2R 6496918 intergenic not near genes chr2R 6499314 intergenic not near genes chr2R_5_6495001 chr2R_6495001 RAL-365 372 chr2R 6530769 6530789 chr2R 6530849 6530869 6 80 1.5 2.0 1.8 2.1 100 chr2R 6530769 intron jing + chr2R 6530819 intron jing + chr2R 6530869 intron jing + chr2R_6_6530001 chr2R_6530001 RAL-365 373 chr2R 6532666 6532676 chr2R 6532777 6532786 6 111 4.0 3.0 3.5 1.3 120 chr2R 6532666 intron,3` UTR jing +,CR43905 - chr2R 6532726 intron,3` UTR jing +,CR43905 - chr2R 6532786 intron,3` UTR jing +,CR43905 - chr2R_6_6530001 chr2R_6530001 RAL-365 374 chr2R 6608794 6608806 chr2R 6611250 6611264 6 2456 17.5 19.0 18.2 0.3 2470 chr2R 6608794 intron jing + chr2R 6610029 intron jing + chr2R 6611264 intron jing + chr2R_6_6610001 chr2R_6610001 RAL-365 375 chr2R 6673015 6673050 chr2R 6673102 6673137 12 87 2.0 4.0 3.0 3.0 122 chr2R 6673015 exon Hsepi - chr2R 6673076 5` UTR Hsepi - chr2R 6673137 5` UTR Hsepi - chr2R_12_6670001 chr2R_6670001 RAL-365 376 chr2R 6699601 6699618 chr2R 6699686 6699702 5 85 0.5 3.0 1.8 1.8 101 chr2R 6699601 intergenic Rab2 + chr2R 6699652 intergenic Rab2 + chr2R 6699702 intergenic Rab2 + chr2R_5_6695001 chr2R_6695001 RAL-365 377 chr2R 6794737 6794755 chr2R 6794818 6794836 12 82 3.5 2.5 3.0 3.0 99 chr2R 6794737 intron Epac - chr2R 6794786 intron Epac - chr2R 6794836 intron Epac - chr2R_12_6790001 chr2R_6790001 RAL-365 378 chr2R 6898313 6898333 chr2R 6898656 6898674 6 343 1.5 2.5 2.0 2.0 361 chr2R 6898313 intron CG30158 + chr2R 6898494 intron CG30158 + chr2R 6898674 intron CG30158 + chr2R_6_6895001 chr2R_6895001 RAL-365 379 chr2R 7160569 7160586 chr2R 7160643 7160664 5 77 0.5 3.0 1.8 1.8 95 chr2R 7160569 intron pk + chr2R 7160616 intron pk + chr2R 7160664 intron pk + chr2R_5_7160001 chr2R_7160001 RAL-365 380 chr2R 7171269 7171277 chr2R 7171355 7171363 4 86 2.5 5.0 3.8 0.8 94 chr2R 7171269 intron pk + chr2R 7171316 intron pk + chr2R 7171363 intron pk + chr2R_4_7170001 chr2R_7170001 RAL-365 381 chr2R 7196577 7196598 chr2R 7201352 7201373 F-element 5 4775 1.5 0.0 0.8 2.8 4796 chr2R 7196577 intron pk + chr2R 7198975 intron pk + chr2R 7201373 intron pk + chr2R_5_7195001 chr2R_7195001 RAL-365 382 chr2R 7253547 7253575 chr2R 7253862 7253890 7 315 0.5 0.5 0.5 4.7 343 chr2R 7253547 intergenic not near genes chr2R 7253718 intergenic not near genes chr2R 7253890 intergenic not near genes chr2R_7_7250001 chr2R_7250001 RAL-365 383 chr2R 7328128 7328150 chr2R 7328239 7328261 7 111 2.0 1.0 1.5 2.8 133 chr2R 7328128 intron,intron Dscam1 -,CR45129 + chr2R 7328194 intron,intron Dscam1 -,CR45129 + chr2R 7328261 intron,intron Dscam1 -,CR45129 + chr2R_7_7325001 chr2R_7325001 RAL-365 384 chr2R 7645813 7645831 chr2R 7646079 7646097 5 266 1.0 1.0 1.0 2.5 284 chr2R 7645813 intron CG43340 + chr2R 7645955 intron CG43340 + chr2R 7646097 intron CG43340 + chr2R_5_7645001 chr2R_7645001 RAL-365 385 chr2R 7760289 7760306 chr2R 7760421 7760442 5 135 0.5 2.5 1.5 2.0 153 chr2R 7760289 intron,intron CG30497 -,CG45093 - chr2R 7760366 intron,intron CG30497 -,CG45093 - chr2R 7760442 intron,intron CG30497 -,CG45093 - chr2R_5_7760001 chr2R_7760001 RAL-365 386 chr2R 7790557 7790583 chr2R 7790636 7790662 6 80 2.5 2.5 2.5 1.7 105 chr2R 7790557 exon CG12824 + chr2R 7790610 exon CG12824 + chr2R 7790662 exon CG12824 + chr2R_6_7790001 chr2R_7790001 RAL-365 387 chr2R 7851259 7851289 chr2R 7851345 7851375 6 86 0.0 1.0 0.5 4.0 116 chr2R 7851259 intron Dgk - chr2R 7851317 intron Dgk - chr2R 7851375 intron Dgk - chr2R_6_7850001 chr2R_7850001 RAL-365 388 chr2R 7869194 7869212 chr2R 7873980 7873998 Doc 5 4785 3.0 2.0 2.5 1.4 4804 chr2R 7869194 intron Dgk - chr2R 7871596 intron Dgk - chr2R 7873998 intron Dgk - chr2R_5_7870001 chr2R_7870001 RAL-365 389 chr2R 7884197 7884228 chr2R 7884281 7884312 8 84 1.5 2.5 2.0 2.7 115 chr2R 7884197 intron Dgk - chr2R 7884254 intron Dgk - chr2R 7884312 intron Dgk - chr2R_8_7880001 chr2R_7880001 RAL-365 390 chr2R 7915719 7915742 chr2R 7915810 7915834 5 92 3.0 2.0 2.5 1.4 115 chr2R 7915719 intron CG12159 - chr2R 7915776 intron CG12159 - chr2R 7915834 intron CG12159 - chr2R_5_7915001 chr2R_7915001 RAL-365 391 chr2R 7997438 7997456 chr2R 7997544 7997562 4 106 1.0 1.0 1.0 2.0 124 chr2R 7997438 intron Hey - chr2R 7997500 intron Hey - chr2R 7997562 intron Hey - chr2R_4_7995001 chr2R_7995001 RAL-365 392 chr2R 8015647 8015682 chr2R 8017670 8017705 7 2023 0.0 1.5 0.8 3.9 2058 chr2R 8015647 intergenic mir-4981 + chr2R 8016676 intergenic not near genes chr2R 8017705 intergenic not near genes chr2R_7_8015001 chr2R_8015001 RAL-365 393 chr2R 8155580 8155608 chr2R 8155669 8155696 8 89 4.5 1.5 3.0 2.0 116 chr2R 8155580 intron,intron Lpin -,kermit - chr2R 8155638 intron,intron Lpin -,kermit - chr2R 8155696 intron,intron Lpin -,kermit - chr2R_8_8155001 chr2R_8155001 RAL-365 394 chr2R 8236042 8236064 chr2R 8236122 8236144 4 80 0.0 2.0 1.0 2.0 102 chr2R 8236042 intergenic not near genes chr2R 8236093 intergenic not near genes chr2R 8236144 intergenic not near genes chr2R_4_8235001 chr2R_8235001 RAL-365 395 chr2R 8252233 8252257 chr2R 8252313 8252337 4 80 2.5 1.0 1.8 1.4 104 chr2R 8252233 intergenic not near genes chr2R 8252285 intergenic not near genes chr2R 8252337 intergenic not near genes chr2R_4_8250001 chr2R_8250001 RAL-365 396 chr2R 8297974 8297997 chr2R 8298055 8298078 6 81 6.5 2.5 4.5 1.1 104 chr2R 8297974 intergenic mir-280 + chr2R 8298026 intergenic mir-280 + chr2R 8298078 intergenic mir-280 + chr2R_6_8295001 chr2R_8295001 RAL-365 397 chr2R 8330860 8330889 chr2R 8331346 8331375 roo 6 486 1.5 3.0 2.2 1.9 515 chr2R 8330860 intron pdm3 + chr2R 8331118 intron pdm3 + chr2R 8331375 intron pdm3 + chr2R_6_8330001 chr2R_8330001 RAL-365 398 chr2R 8338649 8338667 chr2R 8338731 8338749 5 82 1.5 2.0 1.8 1.8 100 chr2R 8338649 intron pdm3 + chr2R 8338699 intron pdm3 + chr2R 8338749 intron pdm3 + chr2R_5_8335001 chr2R_8335001 RAL-365 399 chr2R 8398210 8398243 chr2R 8402991 8403024 Doc 6 4780 1.0 0.5 0.8 3.3 4814 chr2R 8398210 intron CG2121 - chr2R 8400617 intron CG2121 - chr2R 8403024 intron CG2121 - chr2R_6_8400001 chr2R_8400001 RAL-365 400 chr2R 8408852 8408861 chr2R 8408980 8408989 6 128 1.0 4.5 2.8 1.6 137 chr2R 8408852 intron CG2121 - chr2R 8408920 intron CG2121 - chr2R 8408989 intron CG2121 - chr2R_6_8405001 chr2R_8405001 RAL-365 401 chr2R 8452034 8452063 chr2R 8452117 8452146 7 82 1.0 1.5 1.2 3.2 112 chr2R 8452034 intergenic Mal-A1 - chr2R 8452090 intergenic Mal-A1 - chr2R 8452146 intergenic Mal-A1 - chr2R_7_8450001 chr2R_8450001 RAL-365 402 chr2R 8483970 8483994 chr2R 8484046 8484070 8 76 2.0 1.0 1.5 3.2 100 chr2R 8483970 intron mtt - chr2R 8484020 intron mtt - chr2R 8484070 intron mtt - chr2R_8_8480001 chr2R_8480001 RAL-365 403 chr2R 8536204 8536229 chr2R 8536436 8536460 7 232 1.0 2.5 1.8 2.5 256 chr2R 8536204 intergenic not near genes chr2R 8536332 intergenic not near genes chr2R 8536460 intergenic not near genes chr2R_7_8535001 chr2R_8535001 RAL-365 404 chr2R 8722764 8722787 chr2R 8723005 8723028 pogo 9 241 1.0 1.0 1.0 4.5 264 chr2R 8722764 intron CG14767 - chr2R 8722896 intron CG14767 - chr2R 8723028 intron CG14767 - chr2R_9_8720001 chr2R_8720001 RAL-365 405 chr2R 8741337 8741362 chr2R 8741417 8741442 9 80 2.0 0.5 1.2 4.1 105 chr2R 8741337 intron CG8740 + chr2R 8741390 intron CG8740 + chr2R 8741442 intron CG8740 + chr2R_9_8740001 chr2R_8740001 RAL-365 406 chr2R 8850640 8850657 chr2R 8850991 8851012 10 354 2.0 0.5 1.2 4.5 372 chr2R 8850640 intron sns + chr2R 8850826 intron sns + chr2R 8851012 intron sns + chr2R_10_8850001 chr2R_8850001 RAL-365 407 chr2R 8884864 8884897 chr2R 8888442 8888475 5 3579 22.0 16.0 19.0 0.2 3611 chr2R 8884864 intron RyR + chr2R 8886670 exon RyR + chr2R 8888475 3` UTR CG8272 - chr2R_5_8885001 chr2R_8885001 RAL-365 408 chr2R 9151302 9151335 chr2R 9157772 9157804 Burdock 4 6470 1.5 0.5 1.0 2.0 6502 chr2R 9151302 exon CG30345 + chr2R 9154553 intergenic not near genes chr2R 9157804 intergenic CG8008 - chr2R_4_9150001 chr2R_9150001 RAL-365 409 chr2R 9212698 9212713 chr2R 9213184 9213199 roo 6 486 4.5 6.5 5.5 0.9 501 chr2R 9212698 intergenic CR45309 + chr2R 9212948 intergenic CR45309 + chr2R 9213199 5` UTR CR45309 + chr2R_6_9210001 chr2R_9210001 RAL-365 410 chr2R 9390883 9390907 chr2R 9390969 9390993 7 86 2.0 2.0 2.0 2.3 110 chr2R 9390883 exon l(2)03659 + chr2R 9390938 intron l(2)03659 + chr2R 9390993 exon l(2)03659 + chr2R_7_9390001 chr2R_9390001 RAL-365 411 chr2R 9509442 9509455 chr2R 9509526 9509539 6 84 0.5 5.5 3.0 1.5 97 chr2R 9509442 intron brp + chr2R 9509490 intron brp + chr2R 9509539 intron brp + chr2R_6_9505001 chr2R_9505001 RAL-365 412 chr2R 9561838 9561850 chr2R 9561926 9561938 4 88 0.0 2.0 1.0 2.0 100 chr2R 9561838 3` UTR,intron CR45281 -,CG1809 + chr2R 9561888 3` UTR,intron CR45281 -,CG1809 + chr2R 9561938 3` UTR,intron CR45281 -,CG1809 + chr2R_4_9560001 chr2R_9560001 RAL-365 413 chr2R 9726610 9726633 chr2R 9734161 9734184 17.6 4 7551 3.5 0.5 2.0 1.3 7574 chr2R 9726610 intron sqa - chr2R 9730397 intron sqa - chr2R 9734184 intron sqa - chr2R_4_9730001 chr2R_9730001 RAL-365 414 chr2R 9871039 9871071 chr2R 9871525 9871556 roo 9 485 2.0 1.0 1.5 3.6 517 chr2R 9871039 intron cbx - chr2R 9871298 intron cbx - chr2R 9871556 intron,5` UTR cbx -,CG18446 + chr2R_9_9870001 chr2R_9870001 RAL-365 415 chr2R 9945441 9945470 chr2R 9945637 9945666 BS 4 196 0.5 1.0 0.8 2.2 225 chr2R 9945441 intron Mef2 - chr2R 9945554 intron Mef2 - chr2R 9945666 intron Mef2 - chr2R_4_9945001 chr2R_9945001 RAL-365 416 chr2R 10017645 10017681 chr2R 10017724 10017760 9 79 2.5 2.0 2.2 2.8 115 chr2R 10017645 intron Pka-R2 - chr2R 10017702 intron Pka-R2 - chr2R 10017760 intron Pka-R2 - chr2R_9_10015001 chr2R_10015001 RAL-365 417 chr2R 10086919 10086934 chr2R 10087016 10087031 5 97 3.0 3.0 3.0 1.2 112 chr2R 10086919 intron,exon CG2269 +,sut4 - chr2R 10086975 intron,5` UTR CG2269 +,sut4 - chr2R 10087031 intron,5` UTR CG2269 +,sut4 - chr2R_5_10085001 chr2R_10085001 RAL-365 418 chr2R 10176882 10176912 chr2R 10186049 10186079 roo 7 9167 1.5 1.0 1.2 3.2 9197 chr2R 10176882 intron KCNQ - chr2R 10181480 intron KCNQ - chr2R 10186079 intron KCNQ - chr2R_7_10180001 chr2R_10180001 RAL-365 419 chr2R 10313314 10313353 chr2R 10313402 10313441 7 88 1.0 0.5 0.8 3.9 127 chr2R 10313314 intergenic not near genes chr2R 10313378 intergenic not near genes chr2R 10313441 intergenic Ndg + chr2R_7_10310001 chr2R_10310001 RAL-365 420 chr2R 10318519 10318525 chr2R 10318605 10318611 4 86 0.5 3.0 1.8 1.4 92 chr2R 10318519 intron Ndg + chr2R 10318565 intron Ndg + chr2R 10318611 intron Ndg + chr2R_4_10315001 chr2R_10315001 RAL-365 421 chr2R 10319724 10319737 chr2R 10319816 10319829 5 92 1.0 4.0 2.5 1.4 105 chr2R 10319724 intron Ndg + chr2R 10319776 intron Ndg + chr2R 10319829 intron Ndg + chr2R_5_10315001 chr2R_10315001 RAL-365 422 chr2R 10352683 10352694 chr2R 10352759 10352771 4 77 1.0 2.5 1.8 1.4 88 chr2R 10352683 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352727 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352771 intron,exon,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R_4_10350001 chr2R_10350001 RAL-365 423 chr2R 10363868 10363896 chr2R 10363947 10363975 8 79 2.0 0.5 1.2 3.6 107 chr2R 10363868 intron CG42732 - chr2R 10363922 intron CG42732 - chr2R 10363975 intron CG42732 - chr2R_8_10360001 chr2R_10360001 RAL-365 424 chr2R 10403521 10403547 chr2R 10403659 10403685 5 138 0.5 2.5 1.5 2.0 164 chr2R 10403521 intron CG42732 - chr2R 10403603 intron CG42732 - chr2R 10403685 intron CG42732 - chr2R_5_10400001 chr2R_10400001 RAL-365 425 chr2R 10429027 10429050 chr2R 10429104 10429125 5 76 1.5 1.0 1.2 2.3 98 chr2R 10429027 intergenic not near genes chr2R 10429076 intergenic not near genes chr2R 10429125 intergenic not near genes chr2R_5_10425001 chr2R_10425001 RAL-365 426 chr2R 10454096 10454129 chr2R 10454173 10454206 8 77 5.5 3.5 4.5 1.5 110 chr2R 10454096 intron,intron Galphao +,Cyp49a1 - chr2R 10454151 intron,intron Galphao +,Cyp49a1 - chr2R 10454206 intron,intron Galphao +,Cyp49a1 - chr2R_8_10450001 chr2R_10450001 RAL-365 427 chr2R 10469022 10469052 chr2R 10469148 10469178 7 126 1.0 2.0 1.5 2.8 156 chr2R 10469022 intron CG11777 + chr2R 10469100 intron CG11777 + chr2R 10469178 intron CG11777 + chr2R_7_10465001 chr2R_10465001 RAL-365 428 chr2R 10572015 10572042 chr2R 10572204 10572234 4 191 1.5 2.0 1.8 1.4 219 chr2R 10572015 intron psq + chr2R 10572124 intron psq + chr2R 10572234 intron psq + chr2R_4_10570001 chr2R_10570001 RAL-365 429 chr2R 10577959 10577992 chr2R 10578106 10578145 4 148 0.5 0.0 0.2 3.3 186 chr2R 10577959 intron psq + chr2R 10578052 intron psq + chr2R 10578145 intron psq + chr2R_4_10575001 chr2R_10575001 RAL-365 430 chr2R 10585583 10585589 chr2R 10594166 10594172 Tirant 4 8582 1.0 4.5 2.8 1.1 8589 chr2R 10585583 intron psq + chr2R 10589878 intron psq + chr2R 10594172 intron psq + chr2R_4_10585001 chr2R_10585001 RAL-365 431 chr2R 10622353 10622367 chr2R 10637117 10637129 mdg1 6 14764 3.5 1.0 2.2 1.9 14776 chr2R 10622353 intron CG11883 + chr2R 10629741 intron CG11883 + chr2R 10637129 intron CG11883 + chr2R_6_10625001 chr2R_10625001 RAL-365 432 chr2R 10757703 10757711 chr2R 10757787 10757798 5 86 1.5 2.5 2.0 1.7 95 chr2R 10757703 intron CG33144 - chr2R 10757750 intron CG33144 - chr2R 10757798 intron CG33144 - chr2R_5_10755001 chr2R_10755001 RAL-365 433 chr2R 10758791 10758827 chr2R 10758890 10758923 10 98 2.5 2.5 2.5 2.9 132 chr2R 10758791 intron CG33144 - chr2R 10758857 intron CG33144 - chr2R 10758923 intron CG33144 - chr2R_10_10755001 chr2R_10755001 RAL-365 434 chr2R 10761562 10761587 chr2R 10761716 10761741 7 154 2.0 2.0 2.0 2.3 179 chr2R 10761562 intron,5` UTR CG33144 -,CR43605 + chr2R 10761652 intron,5` UTR CG33144 -,CR43605 + chr2R 10761741 intron CG33144 - chr2R_7_10760001 chr2R_10760001 RAL-365 435 chr2R 10948024 10948061 chr2R 10955575 10955612 17.6 6 7551 0.0 0.5 0.2 5.0 7588 chr2R 10948024 intergenic not near genes chr2R 10951818 intergenic not near genes chr2R 10955612 intergenic not near genes chr2R_6_10950001 chr2R_10950001 RAL-365 436 chr2R 11009812 11009839 chr2R 11018986 11019013 roo 10 9174 3.0 3.5 3.2 2.4 9201 chr2R 11009812 intron luna - chr2R 11014412 intron luna - chr2R 11019013 intron luna - chr2R_10_11010001 chr2R_11010001 RAL-365 437 chr2R 11019880 11019893 chr2R 11024946 11024959 jockey 5 5066 2.0 2.0 2.0 1.7 5079 chr2R 11019880 intron luna - chr2R 11022420 intron luna - chr2R 11024959 intron luna - chr2R_5_11020001 chr2R_11020001 RAL-365 438 chr2R 11032646 11032664 chr2R 11032740 11032758 4 94 2.0 3.5 2.8 1.1 112 chr2R 11032646 intron luna - chr2R 11032702 intron luna - chr2R 11032758 intron luna - chr2R_4_11030001 chr2R_11030001 RAL-365 439 chr2R 11059630 11059661 chr2R 11059708 11059739 5 78 1.5 1.5 1.5 2.0 109 chr2R 11059630 intron luna - chr2R 11059684 intron luna - chr2R 11059739 intron luna - chr2R_5_11055001 chr2R_11055001 RAL-365 440 chr2R 11144288 11144315 chr2R 11144388 11144416 5 100 0.0 0.0 0.0 5.0 128 chr2R 11144288 intron CG13229 - chr2R 11144352 intron CG13229 - chr2R 11144416 intron CG13229 - chr2R_5_11140001 chr2R_11140001 RAL-365 441 chr2R 11297639 11297651 chr2R 11301960 11301972 flea 5 4321 2.5 2.0 2.2 1.6 4333 chr2R 11297639 intergenic CG42336 - chr2R 11299806 intergenic not near genes chr2R 11301972 5` UTR CG7741 + chr2R_5_11295001 chr2R_11295001 RAL-365 442 chr2R 11374394 11374412 chr2R 11374473 11374491 5 79 2.5 2.5 2.5 1.4 97 chr2R 11374394 exon CG13203 + chr2R 11374442 intron CG13203 + chr2R 11374491 intron CG13203 + chr2R_5_11370001 chr2R_11370001 RAL-365 443 chr2R 11472651 11472676 chr2R 11473848 11473873 pogo 8 1197 3.5 2.5 3.0 2.0 1222 chr2R 11472651 intergenic not near genes chr2R 11473262 intergenic not near genes chr2R 11473873 intergenic not near genes chr2R_8_11470001 chr2R_11470001 RAL-365 444 chr2R 11614632 11614792 chr2R 11614720 11614880 5 88 1.5 3.0 2.2 1.6 248 chr2R 11614632 intron tou - chr2R 11614756 intron tou - chr2R 11614880 intron tou - chr2R_5_11610001 chr2R_11610001 RAL-365 445 chr2R 11677871 11677891 chr2R 11677949 11677969 5 77 2.0 3.0 2.5 1.4 98 chr2R 11677871 intron,exon Roc2 -,Tret1-2 + chr2R 11677920 intron,3` UTR Roc2 -,Tret1-2 + chr2R 11677969 intron,3` UTR Roc2 -,Tret1-2 + chr2R_5_11675001 chr2R_11675001 RAL-365 446 chr2R 8518779 8518801 chr2R 12066175 12066195 8 3547394 3.5 9.0 6.2 1.1 3547416 chr2R 8518779 intron mtt - chr2R 10292487 intron CAP + chr2R 12066195 intron CG8888 - chr2R_8_10290001 chr2R_10290001 RAL-365 447 chr2R 12146477 12146500 chr2R 12147597 12147620 4 1120 8.0 12.5 10.2 0.4 1143 chr2R 12146477 intron,3` UTR Hen1 +,CG8878 - chr2R 12147048 intron,exon Hen1 +,CG8878 - chr2R 12147620 intron,exon Hen1 +,CG8878 - chr2R_4_12145001 chr2R_12145001 RAL-365 448 chr2R 12145916 12145944 chr2R 12148609 12148637 15 2693 20.0 26.5 23.2 0.6 2721 chr2R 12145916 exon Hen1 + chr2R 12147276 intron,intron Hen1 +,CG8878 - chr2R 12148637 intron,exon Hen1 +,CG8878 - chr2R_15_12145001 chr2R_12145001 RAL-365 449 chr2R 12186000 12186035 chr2R 12186095 12186128 22 95 2.0 3.5 2.8 5.8 128 chr2R 12186000 intron Cyp6g1 + chr2R 12186064 intron Cyp6g1 + chr2R 12186128 intron Cyp6g1 + chr2R_22_12185001 chr2R_12185001 RAL-365 450 chr2R 12187473 12187506 chr2R 12190089 12190122 18 2616 59.0 44.5 51.8 0.3 2649 chr2R 12187473 exon Cyp6g1 + chr2R 12188798 exon Cyp6g2 - chr2R 12190122 exon Cyp6g2 - chr2R_18_12185001 chr2R_12185001 RAL-365 451 chr2R 12217581 12217602 chr2R 12217662 12217682 5 81 0.5 1.0 0.8 2.8 101 chr2R 12217581 intergenic not near genes chr2R 12217632 intergenic not near genes chr2R 12217682 intergenic not near genes chr2R_5_12215001 chr2R_12215001 RAL-365 452 chr2R 12363380 12363414 chr2R 12363812 12363846 19 432 1.5 1.0 1.2 8.6 466 chr2R 12363380 intergenic CG30043 + chr2R 12363613 intergenic CG30043 + chr2R 12363846 intergenic not near genes chr2R_19_12360001 chr2R_12360001 RAL-365 453 chr2R 12501700 12501727 chr2R 12503862 12503889 Rt1c 6 2162 0.5 3.5 2.0 2.0 2189 chr2R 12501700 intron fdl - chr2R 12502794 intron fdl - chr2R 12503889 intron fdl - chr2R_6_12500001 chr2R_12500001 RAL-365 454 chr2R 12702331 12702350 chr2R 12702412 12702432 6 80 1.0 3.0 2.0 2.0 101 chr2R 12702331 intergenic not near genes chr2R 12702382 intergenic not near genes chr2R 12702432 intergenic not near genes chr2R_6_12700001 chr2R_12700001 RAL-365 455 chr2R 12707522 12707543 chr2R 12715888 12715909 roo 5 8366 0.5 1.5 1.0 2.5 8387 chr2R 12707522 intron CG42663 + chr2R 12711716 intron CG42663 + chr2R 12715909 intron CG42663 + chr2R_5_12710001 chr2R_12710001 RAL-365 456 chr2R 12726323 12726354 chr2R 12726415 12726446 8 92 1.5 2.5 2.0 2.7 123 chr2R 12726323 intron CG42663 + chr2R 12726384 intron CG42663 + chr2R 12726446 intron CG42663 + chr2R_8_12725001 chr2R_12725001 RAL-365 457 chr2R 12733814 12733846 chr2R 12733907 12733938 7 93 3.5 4.5 4.0 1.4 124 chr2R 12733814 intron CG42663 + chr2R 12733876 intron CG42663 + chr2R 12733938 intron CG42663 + chr2R_7_12730001 chr2R_12730001 RAL-365 458 chr2R 12789300 12789322 chr2R 12797663 12797685 roo 4 8363 4.5 4.0 4.2 0.8 8385 chr2R 12789300 intron,3` UTR sca +,CR45137 - chr2R 12793492 intron,intron sca +,CR45137 - chr2R 12797685 intron,3` UTR sca +,CR45137 - chr2R_4_12790001 chr2R_12790001 RAL-365 459 chr2R 13167440 13167459 chr2R 13167534 13167553 4 94 1.5 0.0 0.8 2.2 113 chr2R 13167440 intron GLaz - chr2R 13167496 intron GLaz - chr2R 13167553 intron GLaz - chr2R_4_13165001 chr2R_13165001 RAL-365 460 chr2R 13220542 13220560 chr2R 13220621 13220639 4 79 0.0 2.0 1.0 2.0 97 chr2R 13220542 intron CG17059 + chr2R 13220590 intron CG17059 + chr2R 13220639 intron CG17059 + chr2R_4_13220001 chr2R_13220001 RAL-365 461 chr2R 13305499 13305509 chr2R 13305581 13305591 4 82 5.0 2.5 3.8 0.8 92 chr2R 13305499 intergenic not near genes chr2R 13305545 intergenic not near genes chr2R 13305591 intergenic not near genes chr2R_4_13305001 chr2R_13305001 RAL-365 462 chr2R 13547083 13547106 chr2R 13547278 13547301 4 195 1.0 1.5 1.2 1.8 218 chr2R 13547083 intron CG6145 - chr2R 13547192 intron CG6145 - chr2R 13547301 intron CG6145 - chr2R_4_13545001 chr2R_13545001 RAL-365 463 chr2R 13663606 13663636 chr2R 13663684 13663710 6 77 1.5 2.0 1.8 2.1 104 chr2R 13663606 intron fas + chr2R 13663658 intron fas + chr2R 13663710 intron fas + chr2R_6_13660001 chr2R_13660001 RAL-365 464 chr2R 13704265 13704286 chr2R 13704355 13704376 4 90 1.5 0.0 0.8 2.2 111 chr2R 13704265 intron fas + chr2R 13704320 intron fas + chr2R 13704376 intron fas + chr2R_4_13700001 chr2R_13700001 RAL-365 465 chr2R 13719407 13719425 chr2R 13719547 13719571 4 142 0.0 0.0 0.0 4.0 164 chr2R 13719407 intron fas + chr2R 13719489 intron fas + chr2R 13719571 intron fas + chr2R_4_13715001 chr2R_13715001 RAL-365 466 chr2R 13768980 13769006 chr2R 13769077 13769105 5 98 2.0 1.0 1.5 2.0 125 chr2R 13768980 intergenic not near genes chr2R 13769042 intergenic not near genes chr2R 13769105 intergenic not near genes chr2R_5_13765001 chr2R_13765001 RAL-365 467 chr2R 13793148 13793158 chr2R 13793224 13793234 4 76 3.0 1.0 2.0 1.3 86 chr2R 13793148 intergenic not near genes chr2R 13793191 intergenic not near genes chr2R 13793234 intergenic not near genes chr2R_4_13790001 chr2R_13790001 RAL-365 468 chr2R 14000229 14000261 chr2R 14000457 14000489 5 228 0.5 0.0 0.2 4.2 260 chr2R 14000229 intron mam + chr2R 14000359 intron mam + chr2R 14000489 intron mam + chr2R_5_14000001 chr2R_14000001 RAL-365 469 chr2R 14168377 14168392 chr2R 14168466 14168481 5 89 1.5 1.0 1.2 2.3 104 chr2R 14168377 intergenic CG18327 +,CG18324 +,CR44368 - chr2R 14168429 intergenic CG18327 +,CG18324 +,CR44368 - chr2R 14168481 intergenic CG18327 +,CG18324 +,CR44368 - chr2R_5_14165001 chr2R_14165001 RAL-365 470 chr2R 14206574 14206604 chr2R 14206690 14206720 11 115 0.5 1.0 0.8 6.1 146 chr2R 14206574 intron Sox15 - chr2R 14206647 intron Sox15 - chr2R 14206720 intron Sox15 - chr2R_11_14205001 chr2R_14205001 RAL-365 471 chr2R 14357558 14357574 chr2R 14357648 14357664 6 90 1.0 2.5 1.8 2.1 106 chr2R 14357558 intergenic CG8617 -,Arc1 - chr2R 14357611 intergenic Arc1 -,CG8617 - chr2R 14357664 intergenic Arc1 -,CG8617 - chr2R_6_14355001 chr2R_14355001 RAL-365 472 chr2R 14393874 14393895 chr2R 14393959 14393980 7 84 2.5 2.0 2.2 2.2 106 chr2R 14393874 intergenic not near genes chr2R 14393927 intergenic not near genes chr2R 14393980 intergenic not near genes chr2R_7_14390001 chr2R_14390001 RAL-365 473 chr2R 14467317 14467327 chr2R 14476475 14476483 roo 5 9158 1.5 2.0 1.8 1.8 9166 chr2R 14467317 intergenic not near genes chr2R 14471900 intergenic not near genes chr2R 14476483 5` UTR CR44462 + chr2R_5_14470001 chr2R_14470001 RAL-365 474 chr2R 14497396 14497415 chr2R 14498562 14498581 1360 7 1166 2.0 1.5 1.8 2.5 1185 chr2R 14497396 3` UTR Cpsf160 - chr2R 14497988 intron Cpsf160 - chr2R 14498581 3` UTR Cpsf160 - chr2R_7_14495001 chr2R_14495001 RAL-365 475 chr2R 14565562 14565589 chr2R 14565639 14565666 7 77 2.0 1.0 1.5 2.8 104 chr2R 14565562 intron ttv + chr2R 14565614 intron ttv + chr2R 14565666 intron ttv + chr2R_7_14565001 chr2R_14565001 RAL-365 476 chr2R 14569985 14570018 chr2R 14570379 14570412 7 393 1.5 1.0 1.2 3.2 427 chr2R 14569985 intron ttv + chr2R 14570198 intron ttv + chr2R 14570412 intron ttv + chr2R_7_14570001 chr2R_14570001 RAL-365 477 chr2R 14697845 14697866 chr2R 14697926 14697948 6 81 2.0 1.5 1.8 2.1 103 chr2R 14697845 intron mspo - chr2R 14697896 intron mspo - chr2R 14697948 intron mspo - chr2R_6_14695001 chr2R_14695001 RAL-365 478 chr2R 14796871 14796890 chr2R 14796955 14796977 6 86 2.5 4.5 3.5 1.3 106 chr2R 14796871 intron kn - chr2R 14796924 intron kn - chr2R 14796977 intron kn - chr2R_6_14795001 chr2R_14795001 RAL-365 479 chr2R 14799868 14799896 chr2R 14799944 14799972 4 76 0.0 2.0 1.0 2.0 104 chr2R 14799868 intron kn - chr2R 14799920 intron kn - chr2R 14799972 intron kn - chr2R_4_14795001 chr2R_14795001 RAL-365 480 chr2R 14820902 14820934 chr2R 14820988 14821021 7 86 0.5 3.5 2.0 2.3 119 chr2R 14820902 intergenic not near genes chr2R 14820962 intergenic not near genes chr2R 14821021 intergenic not near genes chr2R_7_14820001 chr2R_14820001 RAL-365 481 chr2R 14855035 14855062 chr2R 14855127 14855154 7 92 1.5 0.0 0.8 3.9 119 chr2R 14855035 5` UTR Ciao1 - chr2R 14855094 intergenic Ciao1 -,HPS1 + chr2R 14855154 intergenic Ciao1 -,HPS1 + chr2R_7_14855001 chr2R_14855001 RAL-365 482 chr2R 14880853 14880868 chr2R 14881474 14881489 4 621 0.5 2.0 1.2 1.8 636 chr2R 14880853 exon Cyp6a9 - chr2R 14881171 exon Cyp6a9 - chr2R 14881489 intergenic Cyp6a9 - chr2R_4_14880001 chr2R_14880001 RAL-365 483 chr2R 14889207 14889234 chr2R 14897815 14897842 Max-element 11 8608 3.5 0.0 1.8 3.9 8635 chr2R 14889207 intergenic Cyp6a8 - chr2R 14893524 intergenic not near genes chr2R 14897842 intergenic not near genes chr2R_11_14890001 chr2R_14890001 RAL-365 484 chr2R 14911700 14911722 chr2R 14911823 14911845 5 123 2.0 2.5 2.2 1.6 145 chr2R 14911700 intron CG10249 - chr2R 14911772 intron CG10249 - chr2R 14911845 intron CG10249 - chr2R_5_14910001 chr2R_14910001 RAL-365 485 chr2R 14922147 14922173 chr2R 14922223 14922249 6 76 1.0 3.0 2.0 2.0 102 chr2R 14922147 intron CG10249 - chr2R 14922198 intron CG10249 - chr2R 14922249 intron CG10249 - chr2R_6_14920001 chr2R_14920001 RAL-365 486 chr2R 14987384 14987415 chr2R 14987528 14987559 4 144 2.5 1.0 1.8 1.4 175 chr2R 14987384 intron pcs + chr2R 14987472 intron pcs + chr2R 14987559 intron pcs + chr2R_4_14985001 chr2R_14985001 RAL-365 487 chr2R 14993353 14993381 chr2R 14997086 14997113 10 3732 17.0 13.0 15.0 0.6 3760 chr2R 14993353 exon CG10265 - chr2R 14995233 intergenic CR43830 + chr2R 14997113 intergenic not near genes chr2R_10_14995001 chr2R_14995001 RAL-365 488 chr2R 15004730 15004755 chr2R 15005059 15005084 jockey 6 329 1.0 2.0 1.5 2.4 354 chr2R 15004730 intergenic not near genes chr2R 15004907 intergenic not near genes chr2R 15005084 intergenic not near genes chr2R_6_15000001 chr2R_15000001 RAL-365 489 chr2R 15015464 15015475 chr2R 15022888 15022899 mdg1 4 7424 2.0 1.5 1.8 1.4 7435 chr2R 15015464 intron hbs + chr2R 15019182 intron hbs + chr2R 15022899 intron hbs + chr2R_4_15015001 chr2R_15015001 RAL-365 490 chr2R 15084472 15084494 chr2R 15084568 15084589 7 95 2.5 0.0 1.2 3.2 117 chr2R 15084472 intergenic not near genes chr2R 15084530 intergenic not near genes chr2R 15084589 intergenic not near genes chr2R_7_15080001 chr2R_15080001 RAL-365 491 chr2R 15094894 15094908 chr2R 15094971 15094985 4 77 2.5 2.0 2.2 1.2 91 chr2R 15094894 intergenic not near genes chr2R 15094940 intergenic not near genes chr2R 15094985 intergenic not near genes chr2R_4_15090001 chr2R_15090001 RAL-365 492 chr2R 15119333 15119350 chr2R 15127814 15127827 Tirant 6 8480 2.0 2.5 2.2 1.9 8494 chr2R 15119333 intron chn + chr2R 15123580 intron chn + chr2R 15127827 intron chn + chr2R_6_15120001 chr2R_15120001 RAL-365 493 chr2R 15133436 15133460 chr2R 15133553 15133577 7 117 3.0 0.0 1.5 2.8 141 chr2R 15133436 intron chn + chr2R 15133506 intron chn + chr2R 15133577 intron chn + chr2R_7_15130001 chr2R_15130001 RAL-365 494 chr2R 15296160 15296169 chr2R 15296242 15296252 5 83 3.5 0.5 2.0 1.7 92 chr2R 15296160 intron Trpm - chr2R 15296206 intron Trpm - chr2R 15296252 intron Trpm - chr2R_5_15295001 chr2R_15295001 RAL-365 495 chr2R 15450991 15451000 chr2R 15451084 15451095 5 94 0.5 0.5 0.5 3.3 104 chr2R 15450991 intron CG43729 + chr2R 15451043 intron CG43729 + chr2R 15451095 intron CG43729 + chr2R_5_15450001 chr2R_15450001 RAL-365 496 chr2R 15462082 15462089 chr2R 15462408 15462416 7 326 12.0 15.0 13.5 0.5 334 chr2R 15462082 intron CG43729 + chr2R 15462249 intron CG43729 + chr2R 15462416 intron CG43729 + chr2R_7_15460001 chr2R_15460001 RAL-365 497 chr2R 15538302 15538335 chr2R 15538387 15538420 8 85 1.0 1.5 1.2 3.6 118 chr2R 15538302 5` UTR CG30467 + chr2R 15538361 exon CG30467 + chr2R 15538420 exon CG30467 + chr2R_8_15535001 chr2R_15535001 RAL-365 498 chr2R 15645696 15645701 chr2R 15645792 15645797 4 96 1.5 0.0 0.8 2.2 101 chr2R 15645696 intron CG42524 + chr2R 15645746 intron CG42524 + chr2R 15645797 intron CG42524 + chr2R_4_15645001 chr2R_15645001 RAL-365 499 chr2R 15685364 15685396 chr2R 15685467 15685499 8 102 2.5 1.0 1.8 2.9 135 chr2R 15685364 intron,exon Ranbp11 +,CG30082 - chr2R 15685432 intron,intron Ranbp11 +,CG30082 - chr2R 15685499 intron,intron Ranbp11 +,CG30082 - chr2R_8_15685001 chr2R_15685001 RAL-365 500 chr2R 15714672 15714693 chr2R 15714782 15714803 6 109 0.5 1.0 0.8 3.3 131 chr2R 15714672 intergenic not near genes chr2R 15714738 intergenic not near genes chr2R 15714803 intergenic not near genes chr2R_6_15710001 chr2R_15710001 RAL-365 501 chr2R 15818940 15818970 chr2R 15819026 15819057 6 87 1.5 0.5 1.0 3.0 117 chr2R 15818940 intron tun + chr2R 15818998 intron tun + chr2R 15819057 intron tun + chr2R_6_15815001 chr2R_15815001 RAL-365 502 chr2R 16119893 16119921 chr2R 16120016 16120044 8 124 2.0 2.0 2.0 2.7 151 chr2R 16119893 5` UTR Jhe + chr2R 16119968 intron Jhe + chr2R 16120044 intron Jhe + chr2R_8_16115001 chr2R_16115001 RAL-365 503 chr2R 16245643 16245651 chr2R 16245731 16245739 4 88 1.0 2.0 1.5 1.6 96 chr2R 16245643 intron CngA - chr2R 16245691 intron CngA - chr2R 16245739 intron CngA - chr2R_4_16245001 chr2R_16245001 RAL-365 504 chr2R 16429252 16429283 chr2R 16429328 16429358 5 75 0.5 2.5 1.5 2.0 106 chr2R 16429252 intron Sema-2b + chr2R 16429305 intron Sema-2b + chr2R 16429358 intron Sema-2b + chr2R_5_16425001 chr2R_16425001 RAL-365 505 chr2R 16449321 16449334 chr2R 16449568 16449581 6 247 0.5 1.5 1.0 3.0 260 chr2R 16449321 intergenic not near genes chr2R 16449451 intergenic not near genes chr2R 16449581 intergenic not near genes chr2R_6_16445001 chr2R_16445001 RAL-365 506 chr2R 16496332 16496346 chr2R 16496413 16496427 7 81 4.5 0.0 2.2 2.2 95 chr2R 16496332 intergenic not near genes chr2R 16496380 intergenic not near genes chr2R 16496427 intergenic CG7813 - chr2R_7_16495001 chr2R_16495001 RAL-365 507 chr2R 16547022 16547031 chr2R 16547101 16547110 6 79 0.0 0.0 0.0 6.0 88 chr2R 16547022 intergenic not near genes chr2R 16547066 intergenic not near genes chr2R 16547110 intergenic not near genes chr2R_6_16545001 chr2R_16545001 RAL-365 508 chr2R 16611039 16611064 chr2R 16611118 16611143 7 79 3.5 3.5 3.5 1.6 104 chr2R 16611039 intron CG5065 + chr2R 16611091 intron CG5065 + chr2R 16611143 intron CG5065 + chr2R_7_16610001 chr2R_16610001 RAL-365 509 chr2R 16689155 16689175 chr2R 16689484 16689503 5 328 1.0 0.5 0.8 2.8 348 chr2R 16689155 intron CG30463 - chr2R 16689329 intron CG30463 - chr2R 16689503 intron CG30463 - chr2R_5_16685001 chr2R_16685001 RAL-365 510 chr2R 16737137 16737161 chr2R 16737236 16737261 9 100 2.5 1.5 2.0 3.0 124 chr2R 16737137 3` UTR CG43104 - chr2R 16737199 3` UTR CG43104 - chr2R 16737261 exon CG43104 - chr2R_9_16735001 chr2R_16735001 RAL-365 511 chr2R 16740885 16740921 chr2R 16740979 16741015 7 94 2.5 3.0 2.8 1.8 130 chr2R 16740885 intergenic not near genes chr2R 16740950 intergenic not near genes chr2R 16741015 intergenic not near genes chr2R_7_16740001 chr2R_16740001 RAL-365 512 chr2R 16775643 16775667 chr2R 16775907 16775931 9 264 2.5 2.5 2.5 2.6 288 chr2R 16775643 3` UTR Arp53D + chr2R 16775787 intergenic Arp53D + chr2R 16775931 intergenic Arp53D + chr2R_9_16775001 chr2R_16775001 RAL-365 513 chr2R 16910233 16910243 chr2R 16910332 16910342 5 99 3.0 3.5 3.2 1.2 109 chr2R 16910233 intergenic not near genes chr2R 16910288 intergenic not near genes chr2R 16910342 intergenic not near genes chr2R_5_16910001 chr2R_16910001 RAL-365 514 chr2R 16918240 16918256 chr2R 16918317 16918333 6 77 1.0 2.5 1.8 2.1 93 chr2R 16918240 intergenic not near genes chr2R 16918286 intergenic not near genes chr2R 16918333 intergenic not near genes chr2R_6_16915001 chr2R_16915001 RAL-365 515 chr2R 17077919 17077947 chr2R 17077997 17078024 4 77 3.0 1.0 2.0 1.3 105 chr2R 17077919 intron CG30460 - chr2R 17077972 intron CG30460 - chr2R 17078024 intron CG30460 - chr2R_4_17075001 chr2R_17075001 RAL-365 516 chr2R 17208867 17208897 chr2R 17208944 17208974 6 77 0.0 1.0 0.5 4.0 107 chr2R 17208867 intergenic not near genes chr2R 17208920 intergenic not near genes chr2R 17208974 intergenic not near genes chr2R_6_17205001 chr2R_17205001 RAL-365 517 chr2R 17236506 17236526 chr2R 17241710 17241730 copia 4 5204 1.5 2.0 1.8 1.4 5224 chr2R 17236506 intron mbl + chr2R 17239118 intron mbl + chr2R 17241730 intron mbl + chr2R_4_17235001 chr2R_17235001 RAL-365 518 chr2R 17242826 17242854 chr2R 17242958 17242986 5 132 1.5 1.5 1.5 2.0 160 chr2R 17242826 intron mbl + chr2R 17242906 intron mbl + chr2R 17242986 intron mbl + chr2R_5_17240001 chr2R_17240001 RAL-365 519 chr2R 17459008 17459024 chr2R 17459093 17459109 4 85 3.0 1.5 2.2 1.2 101 chr2R 17459008 intron CG14478 + chr2R 17459058 intron CG14478 + chr2R 17459109 intron CG14478 + chr2R_4_17455001 chr2R_17455001 RAL-365 520 chr2R 17530616 17530636 chr2R 17530693 17530714 6 78 2.0 2.0 2.0 2.0 98 chr2R 17530616 intron Patronin - chr2R 17530665 intron Patronin - chr2R 17530714 intron Patronin - chr2R_6_17530001 chr2R_17530001 RAL-365 521 chr2R 17556440 17556455 chr2R 17556525 17556538 5 85 4.5 2.5 3.5 1.1 98 chr2R 17556440 intergenic MESR4 + chr2R 17556489 intergenic MESR4 + chr2R 17556538 intergenic MESR4 +,Klp54D + chr2R_5_17555001 chr2R_17555001 RAL-365 522 chr2R 17561606 17561618 chr2R 17561684 17561697 4 79 1.5 3.0 2.2 1.2 91 chr2R 17561606 exon Klp54D + chr2R 17561652 intron Klp54D + chr2R 17561697 exon Klp54D + chr2R_4_17560001 chr2R_17560001 RAL-365 523 chr2R 17627754 17627784 chr2R 17628080 17628110 11 327 0.5 1.0 0.8 6.1 356 chr2R 17627754 intron CG10936 - chr2R 17627932 intron CG10936 - chr2R 17628110 intron CG10936 - chr2R_11_17625001 chr2R_17625001 RAL-365 524 chr2R 17724842 17724876 chr2R 17724926 17724960 7 82 0.5 0.5 0.5 4.7 118 chr2R 17724842 exon CG10933 + chr2R 17724901 3` UTR CG10933 + chr2R 17724960 3` UTR CG10933 + chr2R_7_17720001 chr2R_17720001 RAL-365 525 chr2R 17760769 17760797 chr2R 17760870 17760898 7 101 0.5 1.0 0.8 3.9 129 chr2R 17760769 intergenic CG5009 +,HLH54F + chr2R 17760834 intergenic CG5009 +,HLH54F + chr2R 17760898 intergenic CG5009 +,HLH54F + chr2R_7_17760001 chr2R_17760001 RAL-365 526 chr2R 17784027 17784057 chr2R 17784267 17784298 pogo 9 240 2.5 3.5 3.0 2.2 271 chr2R 17784027 intergenic mir-31a - chr2R 17784162 intergenic mir-31a - chr2R 17784298 intergenic mir-31a - chr2R_9_17780001 chr2R_17780001 RAL-365 527 chr2R 17835030 17835061 chr2R 17835124 17835155 5 94 2.0 3.0 2.5 1.4 125 chr2R 17835030 intron grh + chr2R 17835092 intron grh + chr2R 17835155 intron grh + chr2R_5_17835001 chr2R_17835001 RAL-365 528 chr2R 17925027 17925041 chr2R 17925104 17925118 4 77 2.5 0.5 1.5 1.6 91 chr2R 17925027 exon Elk + chr2R 17925072 exon Elk + chr2R 17925118 exon Elk + chr2R_4_17925001 chr2R_17925001 RAL-365 529 chr2R 18017045 18017065 chr2R 18017356 18017378 9 313 1.0 2.0 1.5 3.6 333 chr2R 18017045 intergenic not near genes chr2R 18017212 intergenic not near genes chr2R 18017378 intergenic not near genes chr2R_9_18015001 chr2R_18015001 RAL-365 530 chr2R 18032079 18032118 chr2R 18032208 18032247 7 129 1.5 0.0 0.8 3.9 168 chr2R 18032079 intergenic not near genes chr2R 18032163 intergenic not near genes chr2R 18032247 intergenic not near genes chr2R_7_18030001 chr2R_18030001 RAL-365 531 chr2R 18308283 18308319 chr2R 18308389 18308425 9 106 1.0 1.5 1.2 4.1 142 chr2R 18308283 intron sbb - chr2R 18308354 intron sbb - chr2R 18308425 intron sbb - chr2R_9_18305001 chr2R_18305001 RAL-365 532 chr2R 18358387 18358422 chr2R 18372599 18372634 roo 7 14212 2.5 1.5 2.0 2.3 14247 chr2R 18358387 intergenic not near genes chr2R 18365510 intergenic not near genes chr2R 18372634 intergenic not near genes chr2R_7_18365001 chr2R_18365001 RAL-365 533 chr2R 18390895 18390906 chr2R 18390982 18390993 5 87 0.0 2.0 1.0 2.5 98 chr2R 18390895 intergenic CG15068 - chr2R 18390944 intergenic CG15068 - chr2R 18390993 intergenic CG15068 - chr2R_5_18390001 chr2R_18390001 RAL-365 534 chr2R 18408281 18408315 chr2R 18408402 18408436 13 121 2.0 1.5 1.8 4.6 155 chr2R 18408281 exon GstE8 + chr2R 18408358 exon GstE8 + chr2R 18408436 exon GstE8 + chr2R_13_18405001 chr2R_18405001 RAL-365 535 chr2R 18575812 18575829 chr2R 18582000 18582017 3S18 4 6188 0.5 3.0 1.8 1.4 6205 chr2R 18575812 intron GEFmeso - chr2R 18578914 intron GEFmeso - chr2R 18582017 intron GEFmeso - chr2R_4_18575001 chr2R_18575001 RAL-365 536 chr2R 18590878 18590901 chr2R 18600030 18600053 roo 6 9152 2.0 1.5 1.8 2.1 9175 chr2R 18590878 intron GEFmeso - chr2R 18595466 intron GEFmeso - chr2R 18600053 intron GEFmeso - chr2R_6_18595001 chr2R_18595001 RAL-365 537 chr2R 18738215 18738237 chr2R 18738291 18738313 6 76 1.0 3.0 2.0 2.0 98 chr2R 18738215 intron Hs3st-A + chr2R 18738264 intron Hs3st-A + chr2R 18738313 intron Hs3st-A + chr2R_6_18735001 chr2R_18735001 RAL-365 538 chr2R 18992018 18992050 chr2R 18992159 18992191 5 141 2.0 2.0 2.0 1.7 173 chr2R 18992018 intron tn + chr2R 18992104 intron tn + chr2R 18992191 intron tn + chr2R_5_18990001 chr2R_18990001 RAL-365 539 chr2R 19168741 19168755 chr2R 19168822 19168835 6 81 3.5 1.0 2.2 1.9 94 chr2R 19168741 intron CG10737 + chr2R 19168788 intron CG10737 + chr2R 19168835 intron CG10737 + chr2R_6_19165001 chr2R_19165001 RAL-365 540 chr2R 19352361 19352380 chr2R 19352440 19352459 5 79 2.5 2.0 2.2 1.6 98 chr2R 19352361 intron Rgk1 - chr2R 19352410 intron Rgk1 - chr2R 19352459 intron Rgk1 - chr2R_5_19350001 chr2R_19350001 RAL-365 541 chr2R 19474994 19475016 chr2R 19475092 19475114 5 98 3.0 1.0 2.0 1.7 120 chr2R 19474994 intron par-1 + chr2R 19475054 intron par-1 + chr2R 19475114 intron par-1 + chr2R_5_19475001 chr2R_19475001 RAL-365 542 chr2R 19534986 19535001 chr2R 19535735 19535750 10 749 4.0 4.0 4.0 2.0 764 chr2R 19534986 intron sm - chr2R 19535368 intron sm - chr2R 19535750 intron sm - chr2R_10_19535001 chr2R_19535001 RAL-365 543 chr2R 19536466 19536497 chr2R 19536548 19536578 8 82 1.0 2.0 1.5 3.2 112 chr2R 19536466 intron sm - chr2R 19536522 intron sm - chr2R 19536578 intron sm - chr2R_8_19535001 chr2R_19535001 RAL-365 544 chr2R 19644591 19644604 chr2R 19644761 19644778 5 173 2.0 3.5 2.8 1.3 187 chr2R 19644591 intergenic not near genes chr2R 19644684 intergenic not near genes chr2R 19644778 intergenic not near genes chr2R_5_19640001 chr2R_19640001 RAL-365 545 chr2R 19774019 19774042 chr2R 19774132 19774155 4 113 2.5 1.0 1.8 1.4 136 chr2R 19774019 intergenic not near genes chr2R 19774087 intergenic not near genes chr2R 19774155 intergenic not near genes chr2R_4_19770001 chr2R_19770001 RAL-365 546 chr2R 19776598 19776627 chr2R 19779921 19779950 jockey 4 3323 1.5 2.5 2.0 1.3 3352 chr2R 19776598 intergenic not near genes chr2R 19778274 intergenic not near genes chr2R 19779950 intergenic not near genes chr2R_4_19775001 chr2R_19775001 RAL-365 547 chr2R 19807675 19807692 chr2R 19807755 19807774 4 82 1.5 0.5 1.0 2.0 99 chr2R 19807675 intergenic not near genes chr2R 19807724 intergenic not near genes chr2R 19807774 intergenic not near genes chr2R_4_19805001 chr2R_19805001 RAL-365 548 chr2R 20079427 20079441 chr2R 20079831 20079847 4 405 3.5 1.5 2.5 1.1 420 chr2R 20079427 intergenic not near genes chr2R 20079637 intergenic not near genes chr2R 20079847 intergenic not near genes chr2R_4_20075001 chr2R_20075001 RAL-365 549 chr2R 20198575 20198593 chr2R 20198709 20198726 7 134 2.0 2.0 2.0 2.3 151 chr2R 20198575 intergenic not near genes chr2R 20198650 intergenic not near genes chr2R 20198726 intergenic not near genes chr2R_7_20195001 chr2R_20195001 RAL-365 550 chr2R 20223948 20223960 chr2R 20224033 20224045 6 85 4.5 0.5 2.5 1.7 97 chr2R 20223948 intergenic not near genes chr2R 20223996 intergenic not near genes chr2R 20224045 intergenic not near genes chr2R_6_20220001 chr2R_20220001 RAL-365 551 chr2R 20405934 20405961 chr2R 20406037 20406065 5 103 2.0 0.0 1.0 2.5 131 chr2R 20405934 intergenic not near genes chr2R 20406000 intergenic not near genes chr2R 20406065 intergenic not near genes chr2R_5_20405001 chr2R_20405001 RAL-365 552 chr2R 20523037 20523071 chr2R 20523148 20523182 5 111 2.5 3.5 3.0 1.2 145 chr2R 20523037 intergenic not near genes chr2R 20523110 intergenic not near genes chr2R 20523182 intergenic not near genes chr2R_5_20520001 chr2R_20520001 RAL-365 553 chr2R 20541984 20542017 chr2R 20542062 20542095 7 78 1.0 1.5 1.2 3.2 111 chr2R 20541984 intergenic not near genes chr2R 20542040 intergenic not near genes chr2R 20542095 intergenic not near genes chr2R_7_20540001 chr2R_20540001 RAL-365 554 chr2R 20783311 20783333 chr2R 20788083 20788105 F-element 4 4772 1.0 3.0 2.0 1.3 4794 chr2R 20783311 intergenic not near genes chr2R 20785708 intergenic not near genes chr2R 20788105 intergenic CG43666 - chr2R_4_20785001 chr2R_20785001 RAL-365 555 chr2R 20962907 20962939 chr2R 20963005 20963037 9 98 1.5 2.0 1.8 3.2 130 chr2R 20962907 intergenic not near genes chr2R 20962972 intergenic not near genes chr2R 20963037 intergenic not near genes chr2R_9_20960001 chr2R_20960001 RAL-365 556 chr2R 21141126 21141146 chr2R 21141222 21141242 7 96 0.0 1.5 0.8 3.9 116 chr2R 21141126 intron Magi - chr2R 21141184 intron Magi - chr2R 21141242 intron Magi - chr2R_7_21140001 chr2R_21140001 RAL-365 557 chr2R 21414192 21414196 chr2R 21414348 21414354 4 158 0.0 1.5 0.8 2.2 162 chr2R 21414192 intron Sdc - chr2R 21414273 intron Sdc - chr2R 21414354 intron Sdc - chr2R_4_21410001 chr2R_21410001 RAL-365 558 chr2R 21571127 21571151 chr2R 21571204 21571227 4 77 0.5 2.5 1.5 1.6 100 chr2R 21571127 intron CG10440 - chr2R 21571177 intron CG10440 - chr2R 21571227 intron CG10440 - chr2R_4_21570001 chr2R_21570001 RAL-365 559 chr2R 21701226 21701247 chr2R 21701308 21701330 8 82 1.5 1.5 1.5 3.2 104 chr2R 21701226 intron HmgZ - chr2R 21701278 intron HmgZ - chr2R 21701330 intron HmgZ - chr2R_8_21700001 chr2R_21700001 RAL-365 560 chr2R 21753083 21753117 chr2R 21753568 21753602 roo 12 485 3.5 2.0 2.8 3.2 519 chr2R 21753083 intergenic not near genes chr2R 21753342 intergenic not near genes chr2R 21753602 intergenic not near genes chr2R_12_21750001 chr2R_21750001 RAL-365 561 chr2R 21857362 21857555 chr2R 21857453 21857640 13 86 2.0 3.0 2.5 3.7 278 chr2R 21857362 intergenic not near genes chr2R 21857501 intergenic not near genes chr2R 21857640 intergenic not near genes chr2R_13_21855001 chr2R_21855001 RAL-365 562 chr2R 21886135 21886154 chr2R 21886214 21886233 5 78 1.5 0.0 0.8 2.8 98 chr2R 21886135 intron Fili + chr2R 21886184 intron Fili + chr2R 21886233 intron Fili + chr2R_5_21885001 chr2R_21885001 RAL-365 563 chr2R 21908667 21908686 chr2R 21908752 21908769 8 85 2.0 2.5 2.2 2.5 102 chr2R 21908667 intron Fili + chr2R 21908718 intron Fili + chr2R 21908769 intron Fili + chr2R_8_21905001 chr2R_21905001 RAL-365 564 chr2R 22003099 22003121 chr2R 22003185 22003207 12 86 5.5 3.0 4.2 2.3 108 chr2R 22003099 intron CG34370 - chr2R 22003153 intron CG34370 - chr2R 22003207 intron CG34370 - chr2R_12_22000001 chr2R_22000001 RAL-365 565 chr2R 22072681 22072711 chr2R 22072765 22072796 6 84 2.5 4.0 3.2 1.4 115 chr2R 22072681 intron CG11474 - chr2R 22072738 intron CG11474 - chr2R 22072796 intron CG11474 - chr2R_6_22070001 chr2R_22070001 RAL-365 566 chr2R 22179224 22179234 chr2R 22179305 22179317 8 83 0.0 0.0 0.0 8.0 93 chr2R 22179224 intron CG11170 - chr2R 22179270 intron CG11170 - chr2R 22179317 intron CG11170 - chr2R_8_22175001 chr2R_22175001 RAL-365 567 chr2R 22248854 22248871 chr2R 22248925 22248948 5 75 1.5 3.5 2.5 1.4 94 chr2R 22248854 intron dve + chr2R 22248901 intron dve + chr2R 22248948 intron dve + chr2R_5_22245001 chr2R_22245001 RAL-365 568 chr2R 22349693 22349725 chr2R 22351475 22351509 jockey 7 1784 3.5 4.0 3.8 1.5 1816 chr2R 22349693 intron Liprin-gamma - chr2R 22350601 intron Liprin-gamma - chr2R 22351509 intron Liprin-gamma - chr2R_7_22350001 chr2R_22350001 RAL-365 569 chr2R 22525745 22525774 chr2R 22529300 22529329 jockey 4 3555 2.5 2.0 2.2 1.2 3584 chr2R 22525745 intron px - chr2R 22527537 intron px - chr2R 22529329 intron px - chr2R_4_22525001 chr2R_22525001 RAL-365 570 chr2R 22623455 22623479 chr2R 22623594 22623619 8 140 3.0 1.5 2.2 2.5 164 chr2R 22623455 intron CG33143 + chr2R 22623537 intron CG33143 + chr2R 22623619 intron CG33143 + chr2R_8_22620001 chr2R_22620001 RAL-365 571 chr2R 22641709 22641719 chr2R 22641799 22641809 4 90 1.5 2.5 2.0 1.3 100 chr2R 22641709 intergenic Ugt58Fa -,RpS24 - chr2R 22641759 intergenic Ugt58Fa -,RpS24 - chr2R 22641809 3` UTR Ugt58Fa - chr2R_4_22640001 chr2R_22640001 RAL-365 572 chr2R 22662264 22662274 chr2R 22662365 22662374 6 101 1.5 1.5 1.5 2.4 110 chr2R 22662264 intron CG42566 + chr2R 22662319 intron CG42566 + chr2R 22662374 intron CG42566 + chr2R_6_22660001 chr2R_22660001 RAL-365 573 chr2R 22774985 22774999 chr2R 22775404 22775418 jockey 5 419 1.0 3.0 2.0 1.7 433 chr2R 22774985 intron CG42260 - chr2R 22775202 intron CG42260 - chr2R 22775418 intron CG42260 - chr2R_5_22775001 chr2R_22775001 RAL-365 574 chr2R 22781953 22781973 chr2R 22782140 22782160 4 186 2.5 1.5 2.0 1.3 207 chr2R 22781953 intron CG42260 - chr2R 22782056 intron CG42260 - chr2R 22782160 intron CG42260 - chr2R_4_22780001 chr2R_22780001 RAL-365 575 chr2R 22835368 22835395 chr2R 22835444 22835471 4 76 2.0 2.0 2.0 1.3 103 chr2R 22835368 exon CG12490 + chr2R 22835420 exon CG12490 + chr2R 22835471 exon CG12490 + chr2R_4_22835001 chr2R_22835001 RAL-365 576 chr2R 22843032 22843051 chr2R 22844994 22845013 flea 5 1962 0.5 2.5 1.5 2.0 1981 chr2R 22843032 intergenic CG9826 + chr2R 22844022 intergenic not near genes chr2R 22845013 intergenic not near genes chr2R_5_22840001 chr2R_22840001 RAL-365 577 chr2R 23061773 23061787 chr2R 23061867 23061881 7 94 3.5 2.0 2.8 1.8 108 chr2R 23061773 3` UTR l(2)06496 - chr2R 23061827 3` UTR l(2)06496 - chr2R 23061881 3` UTR l(2)06496 - chr2R_7_23060001 chr2R_23060001 RAL-365 578 chr2R 23070410 23070436 chr2R 23070506 23070532 9 95 3.0 1.0 2.0 3.0 122 chr2R 23070410 intron l(2)k09913 + chr2R 23070471 intron l(2)k09913 + chr2R 23070532 intron l(2)k09913 + chr2R_9_23070001 chr2R_23070001 RAL-365 579 chr2R 23117974 23118006 chr2R 23118094 23118125 4 120 0.0 3.0 1.5 1.6 151 chr2R 23117974 intergenic not near genes chr2R 23118050 intergenic not near genes chr2R 23118125 intergenic not near genes chr2R_4_23115001 chr2R_23115001 RAL-365 580 chr2R 23134839 23134848 chr2R 23134922 23134930 4 82 1.5 6.5 4.0 0.8 91 chr2R 23134839 intergenic not near genes chr2R 23134884 intergenic not near genes chr2R 23134930 intergenic not near genes chr2R_4_23130001 chr2R_23130001 RAL-365 581 chr2R 23243201 23243230 chr2R 23243277 23243306 6 76 3.0 1.0 2.0 2.0 105 chr2R 23243201 intergenic not near genes chr2R 23243254 intergenic not near genes chr2R 23243306 intergenic not near genes chr2R_6_23240001 chr2R_23240001 RAL-365 582 chr2R 23257512 23257532 chr2R 23257595 23257615 5 83 0.5 2.5 1.5 2.0 103 chr2R 23257512 intergenic not near genes chr2R 23257564 intergenic not near genes chr2R 23257615 intergenic not near genes chr2R_5_23255001 chr2R_23255001 RAL-365 583 chr2R 23350523 23350540 chr2R 23350649 23350667 7 127 1.5 3.0 2.2 2.2 144 chr2R 23350523 intergenic not near genes chr2R 23350595 intergenic not near genes chr2R 23350667 intergenic not near genes chr2R_7_23350001 chr2R_23350001 RAL-365 584 chr2R 23356276 23356309 chr2R 23356365 23356398 7 88 0.5 1.5 1.0 3.5 122 chr2R 23356276 3` UTR Rpi + chr2R 23356337 3` UTR Rpi + chr2R 23356398 3` UTR,3` UTR Rpi +,CG3500 - chr2R_7_23355001 chr2R_23355001 RAL-365 585 chr2R 23402609 23402639 chr2R 23407685 23407715 flea 4 5076 1.5 2.0 1.8 1.4 5106 chr2R 23402609 intergenic CG3520 - chr2R 23405162 intergenic not near genes chr2R 23407715 intergenic not near genes chr2R_4_23405001 chr2R_23405001 RAL-365 586 chr2R 23411061 23411083 chr2R 23411143 23411165 6 82 0.0 0.5 0.2 5.0 104 chr2R 23411061 intergenic not near genes chr2R 23411113 intergenic not near genes chr2R 23411165 intergenic not near genes chr2R_6_23410001 chr2R_23410001 RAL-365 587 chr2R 23422644 23422676 chr2R 23422724 23422756 5 80 1.5 2.0 1.8 1.8 112 chr2R 23422644 intron CG9815 - chr2R 23422700 intron CG9815 - chr2R 23422756 intron CG9815 - chr2R_5_23420001 chr2R_23420001 RAL-365 588 chr2R 23437235 23437241 chr2R 23437312 23437317 4 77 2.0 1.5 1.8 1.4 82 chr2R 23437235 intergenic not near genes chr2R 23437276 intergenic not near genes chr2R 23437317 intergenic not near genes chr2R_4_23435001 chr2R_23435001 RAL-365 589 chr2R 23493671 23493696 chr2R 23493756 23493780 8 85 4.0 2.5 3.2 1.9 109 chr2R 23493671 intergenic not near genes chr2R 23493726 intergenic not near genes chr2R 23493780 intergenic not near genes chr2R_8_23490001 chr2R_23490001 RAL-365 590 chr2R 23523913 23523945 chr2R 23524291 23524323 6 378 2.5 2.0 2.2 1.9 410 chr2R 23523913 5` UTR mi + chr2R 23524118 5` UTR mi + chr2R 23524323 5` UTR mi + chr2R_6_23520001 chr2R_23520001 RAL-365 591 chr2R 23546555 23546582 chr2R 23546741 23546771 7 188 2.0 3.5 2.8 1.8 216 chr2R 23546555 intron wmd - chr2R 23546663 intron wmd - chr2R 23546771 intron wmd - chr2R_7_23545001 chr2R_23545001 RAL-365 592 chr2R 23640800 23640835 chr2R 23640887 23640922 5 87 2.0 0.0 1.0 2.5 122 chr2R 23640800 intron retn + chr2R 23640861 intron retn + chr2R 23640922 intron retn + chr2R_5_23640001 chr2R_23640001 RAL-365 593 chr2R 23744764 23744791 chr2R 23744843 23744870 8 79 2.0 2.5 2.2 2.5 106 chr2R 23744764 intron egl - chr2R 23744817 intron egl - chr2R 23744870 intron egl - chr2R_8_23740001 chr2R_23740001 RAL-365 594 chr2R 23914309 23914328 chr2R 23921933 23921952 412 6 7624 1.5 2.0 1.8 2.1 7643 chr2R 23914309 exon kcc + chr2R 23918130 intron kcc + chr2R 23921952 intron kcc + chr2R_6_23915001 chr2R_23915001 RAL-365 595 chr2R 23986517 23986547 chr2R 23986596 23986627 6 80 1.0 2.0 1.5 2.4 110 chr2R 23986517 intron Phm - chr2R 23986572 intron Phm - chr2R 23986627 intron,5` UTR Phm -,CG30178 + chr2R_6_23985001 chr2R_23985001 RAL-365 596 chr2R 24031379 24031410 chr2R 24031463 24031494 9 84 3.0 2.0 2.5 2.6 115 chr2R 24031379 5` UTR CG30172 - chr2R 24031436 intergenic CG30172 -,Chi - chr2R 24031494 intergenic Chi -,CG30172 - chr2R_9_24030001 chr2R_24030001 RAL-365 597 chr2R 24045230 24045257 chr2R 24045314 24045340 4 84 1.0 3.0 2.0 1.3 110 chr2R 24045230 intron tsr - chr2R 24045285 intron tsr - chr2R 24045340 intron tsr - chr2R_4_24045001 chr2R_24045001 RAL-365 598 chr2R 24147071 24147095 chr2R 24154648 24154673 412 13 7578 1.5 2.5 2.0 4.3 7602 chr2R 24147071 intron Dat + chr2R 24150872 intron Dat + chr2R 24154673 intron Dat + chr2R_13_24150001 chr2R_24150001 RAL-365 599 chr2R 24177235 24177269 chr2R 24184720 24184754 412 10 7485 4.5 2.0 3.2 2.4 7519 chr2R 24177235 3` UTR Nop60B + chr2R 24180994 intron Nop60B + chr2R 24184754 3` UTR Nop60B + chr2R_10_24180001 chr2R_24180001 RAL-365 600 chr2R 24228402 24228419 chr2R 24228483 24228496 4 80 2.0 1.5 1.8 1.4 94 chr2R 24228402 intron CG30419 - chr2R 24228449 intron CG30419 - chr2R 24228496 intron CG30419 - chr2R_4_24225001 chr2R_24225001 RAL-365 601 chr2R 24321135 24321170 chr2R 24321233 24321267 7 98 4.5 1.5 3.0 1.8 132 chr2R 24321135 intergenic not near genes chr2R 24321201 intergenic not near genes chr2R 24321267 intergenic not near genes chr2R_7_24320001 chr2R_24320001 RAL-365 602 chr2R 24353430 24353455 chr2R 24361792 24361817 roo 4 8362 3.5 3.0 3.2 1.0 8387 chr2R 24353430 intron,intron bs +,CR44811 - chr2R 24357624 intron,intron bs +,CR44811 - chr2R 24361817 intron,intron bs +,CR44811 - chr2R_4_24355001 chr2R_24355001 RAL-365 603 chr2R 24509305 24509336 chr2R 24509390 24509421 6 85 1.5 2.0 1.8 2.1 116 chr2R 24509305 intergenic Letm1 - chr2R 24509363 intergenic Letm1 - chr2R 24509421 intergenic Letm1 - chr2R_6_24505001 chr2R_24505001 RAL-365 604 chr2R 24590117 24590144 chr2R 24590208 24590235 10 92 1.5 1.5 1.5 4.0 118 chr2R 24590117 intron pio + chr2R 24590176 intron pio + chr2R 24590235 intron pio + chr2R_10_24590001 chr2R_24590001 RAL-365 605 chr2R 24647600 24647617 chr2R 24655157 24655174 412 6 7557 2.5 0.5 1.5 2.4 7574 chr2R 24647600 intergenic not near genes chr2R 24651387 intergenic not near genes chr2R 24655174 intergenic not near genes chr2R_6_24650001 chr2R_24650001 RAL-365 606 chr2R 24727885 24727917 chr2R 24735393 24735425 mdg1 10 7507 1.5 1.5 1.5 4.0 7540 chr2R 24727885 intron Mid1 - chr2R 24731655 intron Mid1 - chr2R 24735425 intron Mid1 - chr2R_10_24730001 chr2R_24730001 RAL-365 607 chr2R 24739757 24739784 chr2R 24739838 24739865 10 81 2.5 1.5 2.0 3.3 108 chr2R 24739757 intergenic CR44828 - chr2R 24739811 intergenic CR44828 - chr2R 24739865 intergenic CR44828 - chr2R_10_24735001 chr2R_24735001 RAL-365 608 chr2R 24763610 24763638 chr2R 24765586 24765613 G2 9 1976 1.5 2.5 2.0 3.0 2003 chr2R 24763610 exon CG3894 + chr2R 24764612 intron CG3894 + chr2R 24765613 exon CG3894 + chr2R_9_24760001 chr2R_24760001 RAL-365 609 chr2R 24844342 24844367 chr2R 24844427 24844453 5 86 2.0 0.5 1.2 2.3 111 chr2R 24844342 intergenic not near genes chr2R 24844398 intergenic not near genes chr2R 24844453 intergenic not near genes chr2R_5_24840001 chr2R_24840001 RAL-365 610 chr2R 25107950 25107978 chr2R 25108195 25108225 8 245 13.0 12.5 12.8 0.6 275 chr2R 25107950 intron lov - chr2R 25108088 intron lov - chr2R 25108225 intron lov - chr2R_8_25105001 chr2R_25105001 RAL-365 611 chr2R 25141656 25141679 chr2R 25159346 25159369 roo 4 17690 1.5 3.0 2.2 1.2 17713 chr2R 25141656 intergenic not near genes chr2R 25150512 intergenic not near genes chr2R 25159369 intergenic not near genes chr2R_4_25150001 chr2R_25150001 RAL-365 612 chr3L 86462 86478 chr3L 86541 86557 5 79 2.5 2.0 2.2 1.6 95 chr3L 86462 intergenic not near genes chr3L 86510 intergenic not near genes chr3L 86557 intergenic not near genes chr3L_5_85001 chr3L_85001 RAL-365 613 chr3L 105743 105774 chr3L 105838 105869 6 95 1.5 0.5 1.0 3.0 126 chr3L 105743 intergenic not near genes chr3L 105806 intergenic not near genes chr3L 105869 intergenic not near genes chr3L_6_105001 chr3L_105001 RAL-365 614 chr3L 315669 315698 chr3L 315751 315780 9 82 1.5 3.5 2.5 2.6 111 chr3L 315669 intron fwd - chr3L 315724 intron fwd - chr3L 315780 intron fwd - chr3L_9_315001 chr3L_315001 RAL-365 615 chr3L 365525 365556 chr3L 365611 365651 4 88 4.5 0.0 2.2 1.2 126 chr3L 365525 3` UTR CG1233 + chr3L 365588 3` UTR CG1233 + chr3L 365651 3` UTR CG1233 + chr3L_4_365001 chr3L_365001 RAL-365 616 chr3L 390958 390979 chr3L 391062 391084 10 105 3.0 2.5 2.8 2.6 126 chr3L 390958 intron trh - chr3L 391021 intron trh - chr3L 391084 intron trh - chr3L_10_390001 chr3L_390001 RAL-365 617 chr3L 416136 416159 chr3L 416224 416246 7 88 2.5 3.0 2.8 1.8 110 chr3L 416136 intergenic not near genes chr3L 416191 intergenic not near genes chr3L 416246 intergenic not near genes chr3L_7_415001 chr3L_415001 RAL-365 618 chr3L 428187 428202 chr3L 428308 428323 5 121 0.5 0.0 0.2 4.2 136 chr3L 428187 intergenic not near genes chr3L 428255 intergenic not near genes chr3L 428323 intergenic not near genes chr3L_5_425001 chr3L_425001 RAL-365 619 chr3L 522899 522928 chr3L 523248 523277 7 348 2.0 2.5 2.2 2.2 378 chr3L 522899 intron klar - chr3L 523088 intron klar - chr3L 523277 intron klar - chr3L_7_520001 chr3L_520001 RAL-365 620 chr3L 563991 564002 chr3L 564170 564180 6 178 2.5 8.0 5.2 1.0 189 chr3L 563991 intron hipk + chr3L 564086 intron hipk + chr3L 564180 intron hipk + chr3L_6_560001 chr3L_560001 RAL-365 621 chr3L 705898 705925 chr3L 705994 706021 5 96 2.0 1.5 1.8 1.8 123 chr3L 705898 intergenic CG13895 -,CR44514 + chr3L 705960 3` UTR CG13895 - chr3L 706021 3` UTR CG13895 - chr3L_5_705001 chr3L_705001 RAL-365 622 chr3L 789924 789941 chr3L 790409 790426 roo 4 485 1.5 3.5 2.5 1.1 502 chr3L 789924 intergenic not near genes chr3L 790175 intergenic not near genes chr3L 790426 intergenic not near genes chr3L_4_790001 chr3L_790001 RAL-365 623 chr3L 857999 858026 chr3L 866480 866507 Tirant 4 8480 2.0 1.0 1.5 1.6 8508 chr3L 857999 intergenic not near genes chr3L 862253 intergenic not near genes chr3L 866507 5` UTR CG12502 + chr3L_4_860001 chr3L_860001 RAL-365 624 chr3L 925175 925208 chr3L 932601 932634 mdg1 10 7426 1.0 3.5 2.2 3.1 7459 chr3L 925175 intron Glut1 + chr3L 928904 intron Glut1 + chr3L 932634 intron Glut1 + chr3L_10_925001 chr3L_925001 RAL-365 625 chr3L 939773 939793 chr3L 940893 940910 jockey 11 1120 5.0 6.5 5.8 1.6 1137 chr3L 939773 intron Glut1 + chr3L 940342 intron Glut1 + chr3L 940910 intron Glut1 + chr3L_11_940001 chr3L_940001 RAL-365 626 chr3L 958313 958335 chr3L 958397 958419 5 84 3.0 2.5 2.8 1.3 106 chr3L 958313 intron Glut1 + chr3L 958366 intron Glut1 + chr3L 958419 intron Glut1 + chr3L_5_955001 chr3L_955001 RAL-365 627 chr3L 961020 961034 chr3L 961113 961127 4 93 2.5 3.5 3.0 1.0 107 chr3L 961020 intron Glut1 + chr3L 961074 intron Glut1 + chr3L 961127 intron Glut1 + chr3L_4_960001 chr3L_960001 RAL-365 628 chr3L 1031581 1031607 chr3L 1031656 1031683 4 76 0.0 1.5 0.8 2.2 102 chr3L 1031581 intron trio - chr3L 1031632 intron trio - chr3L 1031683 intron trio - chr3L_4_1030001 chr3L_1030001 RAL-365 629 chr3L 1040552 1040578 chr3L 1040636 1040662 7 84 2.5 1.5 2.0 2.3 110 chr3L 1040552 intron bab1 - chr3L 1040607 intron bab1 - chr3L 1040662 intron bab1 - chr3L_7_1040001 chr3L_1040001 RAL-365 630 chr3L 1219594 1219624 chr3L 1227327 1227357 412 12 7733 3.0 3.0 3.0 3.0 7763 chr3L 1219594 intron mwh + chr3L 1223476 intron mwh + chr3L 1227357 intron mwh + chr3L_12_1220001 chr3L_1220001 RAL-365 631 chr3L 1275115 1275126 chr3L 1275194 1275206 6 79 2.5 2.0 2.2 1.9 91 chr3L 1275115 intergenic not near genes chr3L 1275160 intergenic not near genes chr3L 1275206 intergenic not near genes chr3L_6_1275001 chr3L_1275001 RAL-365 632 chr3L 1310982 1311004 chr3L 1315842 1315864 5 4861 23.0 16.0 19.5 0.2 4882 chr3L 1310982 exon CG2469 + chr3L 1313423 intergenic CG9186 -,CG9153 + chr3L 1315864 exon CG9153 + chr3L_5_1310001 chr3L_1310001 RAL-365 633 chr3L 1347161 1347193 chr3L 1347246 1347276 5 84 1.0 1.0 1.0 2.5 115 chr3L 1347161 intron Ptp61F - chr3L 1347218 intron Ptp61F - chr3L 1347276 intron Ptp61F - chr3L_5_1345001 chr3L_1345001 RAL-365 634 chr3L 1364053 1364063 chr3L 1364139 1364149 4 86 0.0 5.5 2.8 1.1 96 chr3L 1364053 intron Ptp61F - chr3L 1364101 intron Ptp61F - chr3L 1364149 intron Ptp61F - chr3L_4_1360001 chr3L_1360001 RAL-365 635 chr3L 1463424 1463449 chr3L 1463505 1463527 10 80 3.5 2.5 3.0 2.5 103 chr3L 1463424 intron Ptp61F - chr3L 1463476 intron Ptp61F - chr3L 1463527 intron Ptp61F - chr3L_10_1460001 chr3L_1460001 RAL-365 636 chr3L 1506006 1506030 chr3L 1513603 1513627 17.6 5 7597 2.0 2.0 2.0 1.7 7621 chr3L 1506006 intron,intron Psa +,cue - chr3L 1509816 intron,intron Psa +,cue - chr3L 1513627 intron,intron Psa +,cue - chr3L_5_1505001 chr3L_1505001 RAL-365 637 chr3L 1571242 1571491 chr3L 1571323 1571576 4 84 1.0 0.5 0.8 2.2 334 chr3L 1571242 intron CG12004 + chr3L 1571409 intron CG12004 + chr3L 1571576 intron CG12004 + chr3L_4_1570001 chr3L_1570001 RAL-365 638 chr3L 1683564 1683592 chr3L 1683647 1683675 5 83 2.5 5.0 3.8 1.0 111 chr3L 1683564 intron CG7991 + chr3L 1683620 intron CG7991 + chr3L 1683675 intron CG7991 + chr3L_5_1680001 chr3L_1680001 RAL-365 639 chr3L 1697515 1697531 chr3L 1697593 1697610 7 79 1.5 1.0 1.2 3.2 95 chr3L 1697515 intron CG7991 + chr3L 1697562 intron CG7991 + chr3L 1697610 intron CG7991 + chr3L_7_1695001 chr3L_1695001 RAL-365 640 chr3L 1922449 1922462 chr3L 1922527 1922540 5 78 6.0 5.0 5.5 0.8 91 chr3L 1922449 intron Dbx + chr3L 1922494 intron Dbx + chr3L 1922540 intron Dbx + chr3L_5_1920001 chr3L_1920001 RAL-365 641 chr3L 2013659 2013686 chr3L 2013737 2013764 5 78 0.5 2.5 1.5 2.0 105 chr3L 2013659 intergenic not near genes chr3L 2013712 intergenic not near genes chr3L 2013764 intergenic not near genes chr3L_5_2010001 chr3L_2010001 RAL-365 642 chr3L 2035270 2035289 chr3L 2035346 2035365 5 76 1.5 0.0 0.8 2.8 95 chr3L 2035270 intergenic not near genes chr3L 2035318 intergenic not near genes chr3L 2035365 intergenic not near genes chr3L_5_2035001 chr3L_2035001 RAL-365 643 chr3L 2168771 2168808 chr3L 2168862 2168899 8 91 1.0 1.5 1.2 3.6 128 chr3L 2168771 exon CG15879 - chr3L 2168835 intron CG15879 - chr3L 2168899 intron CG15879 - chr3L_8_2165001 chr3L_2165001 RAL-365 644 chr3L 2218482 2218494 chr3L 2218557 2218570 6 76 3.5 4.0 3.8 1.2 88 chr3L 2218482 intergenic not near genes chr3L 2218526 intergenic not near genes chr3L 2218570 intergenic not near genes chr3L_6_2215001 chr3L_2215001 RAL-365 645 chr3L 2279051 2279068 chr3L 2279197 2279215 5 147 0.0 1.5 0.8 2.8 164 chr3L 2279051 intergenic not near genes chr3L 2279133 intergenic not near genes chr3L 2279215 intergenic not near genes chr3L_5_2275001 chr3L_2275001 RAL-365 646 chr3L 2308006 2308028 chr3L 2308111 2308134 7 106 2.5 3.0 2.8 1.8 128 chr3L 2308006 intergenic not near genes chr3L 2308070 intergenic not near genes chr3L 2308134 intergenic not near genes chr3L_7_2305001 chr3L_2305001 RAL-365 647 chr3L 2347078 2347102 chr3L 2347189 2347213 7 111 0.5 3.5 2.0 2.3 135 chr3L 2347078 intergenic not near genes chr3L 2347146 intergenic not near genes chr3L 2347213 intergenic not near genes chr3L_7_2345001 chr3L_2345001 RAL-365 648 chr3L 2355144 2355176 chr3L 2355228 2355259 7 84 3.0 1.0 2.0 2.3 115 chr3L 2355144 intergenic not near genes chr3L 2355202 intergenic not near genes chr3L 2355259 intergenic not near genes chr3L_7_2355001 chr3L_2355001 RAL-365 649 chr3L 2357687 2357712 chr3L 2362570 2362595 8 4883 3.0 0.0 1.5 3.2 4908 chr3L 2357687 intergenic not near genes chr3L 2360141 intergenic CG13801 + chr3L 2362595 exon CG13801 + chr3L_8_2360001 chr3L_2360001 RAL-365 650 chr3L 2447504 2447531 chr3L 2456659 2456685 roo 4 9155 2.5 2.0 2.2 1.2 9181 chr3L 2447504 intron CG45186 + chr3L 2452094 intron CG45186 + chr3L 2456685 intron CG45186 + chr3L_4_2450001 chr3L_2450001 RAL-365 651 chr3L 2480305 2480318 chr3L 2480404 2480418 6 100 2.5 0.5 1.5 2.4 113 chr3L 2480305 intron CG45186 + chr3L 2480362 intron CG45186 + chr3L 2480418 intron CG45186 + chr3L_6_2480001 chr3L_2480001 RAL-365 652 chr3L 2506386 2506404 chr3L 2506593 2506611 5 207 1.0 4.5 2.8 1.3 225 chr3L 2506386 3` UTR Spn - chr3L 2506498 3` UTR Spn - chr3L 2506611 3` UTR Spn - chr3L_5_2505001 chr3L_2505001 RAL-365 653 chr3L 2533648 2533680 chr3L 2533730 2533762 14 82 2.0 0.5 1.2 6.4 114 chr3L 2533648 intron Spn - chr3L 2533705 intron Spn - chr3L 2533762 intron Spn - chr3L_14_2530001 chr3L_2530001 RAL-365 654 chr3L 2548259 2548283 chr3L 2548348 2548372 6 89 2.5 4.0 3.2 1.4 113 chr3L 2548259 intron Spn - chr3L 2548316 intron Spn - chr3L 2548372 intron Spn - chr3L_6_2545001 chr3L_2545001 RAL-365 655 chr3L 2674774 2674807 chr3L 2674855 2674888 8 81 0.0 1.0 0.5 5.3 114 chr3L 2674774 intron Fife - chr3L 2674831 intron Fife - chr3L 2674888 intron Fife - chr3L_8_2670001 chr3L_2670001 RAL-365 656 chr3L 2680522 2680546 chr3L 2680602 2680625 4 80 0.0 0.0 0.0 4.0 103 chr3L 2680522 intron Fife - chr3L 2680574 intron Fife - chr3L 2680625 intron Fife - chr3L_4_2680001 chr3L_2680001 RAL-365 657 chr3L 2683946 2683978 chr3L 2684021 2684054 7 76 1.0 3.0 2.0 2.3 108 chr3L 2683946 intron Fife - chr3L 2684000 intron Fife - chr3L 2684054 intron Fife - chr3L_7_2680001 chr3L_2680001 RAL-365 658 chr3L 2719540 2719559 chr3L 2719642 2719661 5 102 1.5 1.5 1.5 2.0 121 chr3L 2719540 3` UTR Mrtf - chr3L 2719600 3` UTR Mrtf - chr3L 2719661 3` UTR Mrtf - chr3L_5_2715001 chr3L_2715001 RAL-365 659 chr3L 2795722 2795745 chr3L 2795845 2795868 4 123 1.0 2.0 1.5 1.6 146 chr3L 2795722 intron CG43444 - chr3L 2795795 intron CG43444 - chr3L 2795868 intron CG43444 - chr3L_4_2795001 chr3L_2795001 RAL-365 660 chr3L 2906070 2906098 chr3L 2906157 2906185 8 86 1.0 1.5 1.2 3.6 115 chr3L 2906070 intron Shab + chr3L 2906128 intron Shab + chr3L 2906185 intron Shab + chr3L_8_2905001 chr3L_2905001 RAL-365 661 chr3L 3028266 3028295 chr3L 3028350 3028378 5 84 1.0 4.0 2.5 1.4 112 chr3L 3028266 intergenic not near genes chr3L 3028322 intergenic not near genes chr3L 3028378 intergenic not near genes chr3L_5_3025001 chr3L_3025001 RAL-365 662 chr3L 3058808 3058839 chr3L 3058884 3058916 8 77 0.5 0.5 0.5 5.3 108 chr3L 3058808 intron CG32486 - chr3L 3058862 intron CG32486 - chr3L 3058916 intron CG32486 - chr3L_8_3055001 chr3L_3055001 RAL-365 663 chr3L 3060079 3060117 chr3L 3060206 3060244 9 127 2.0 1.5 1.8 3.2 165 chr3L 3060079 intron CG32486 - chr3L 3060162 intron CG32486 - chr3L 3060244 intron CG32486 - chr3L_9_3060001 chr3L_3060001 RAL-365 664 chr3L 3061290 3061299 chr3L 3069871 3069880 Tirant 4 8582 2.0 3.0 2.5 1.1 8590 chr3L 3061290 intron CG32486 - chr3L 3065585 intron CG32486 - chr3L 3069880 intron CG32486 - chr3L_4_3065001 chr3L_3065001 RAL-365 665 chr3L 3074813 3074820 chr3L 3074890 3074897 5 77 2.5 4.0 3.2 1.2 84 chr3L 3074813 intron CG11486 + chr3L 3074855 intron CG11486 + chr3L 3074897 intron CG11486 + chr3L_5_3070001 chr3L_3070001 RAL-365 666 chr3L 3102817 3102848 chr3L 3102903 3102934 5 85 3.5 2.5 3.0 1.2 117 chr3L 3102817 intron Cht7 - chr3L 3102876 intron Cht7 - chr3L 3102934 intron Cht7 - chr3L_5_3100001 chr3L_3100001 RAL-365 667 chr3L 3128199 3128215 chr3L 3128285 3128301 4 86 1.5 2.5 2.0 1.3 102 chr3L 3128199 intergenic prominin-like - chr3L 3128250 intergenic not near genes chr3L 3128301 intergenic not near genes chr3L_4_3125001 chr3L_3125001 RAL-365 668 chr3L 3165352 3165379 chr3L 3165435 3165462 6 83 1.0 1.5 1.2 2.7 110 chr3L 3165352 intron,intron Asciz -,CG32280 + chr3L 3165407 intron,intron Asciz -,CG32280 + chr3L 3165462 intron,intron Asciz -,CG32280 + chr3L_6_3165001 chr3L_3165001 RAL-365 669 chr3L 3269119 3269126 chr3L 3269210 3269217 4 91 0.0 4.0 2.0 1.3 98 chr3L 3269119 intergenic CG34265 + chr3L 3269168 intergenic CG34265 + chr3L 3269217 intergenic CG34265 + chr3L_4_3265001 chr3L_3265001 RAL-365 670 chr3L 3281439 3281473 chr3L 3281935 3281969 Doc 10 496 4.0 3.0 3.5 2.2 530 chr3L 3281439 intron CG12017 + chr3L 3281704 intron CG12017 + chr3L 3281969 intron CG12017 + chr3L_10_3280001 chr3L_3280001 RAL-365 671 chr3L 3317531 3317562 chr3L 3317610 3317641 7 79 0.5 1.0 0.8 3.9 110 chr3L 3317531 intergenic Drsl5 +,PIG-C - chr3L 3317586 intergenic PIG-C -,Drsl5 + chr3L 3317641 intergenic PIG-C -,Drsl5 + chr3L_7_3315001 chr3L_3315001 RAL-365 672 chr3L 3475073 3475107 chr3L 3475517 3475551 jockey 9 444 1.0 2.0 1.5 3.6 478 chr3L 3475073 intron CG42324 + chr3L 3475312 intron CG42324 + chr3L 3475551 intron CG42324 + chr3L_9_3475001 chr3L_3475001 RAL-365 673 chr3L 3581766 3581778 chr3L 3581850 3581863 4 85 0.0 3.5 1.8 1.4 97 chr3L 3581766 intron Eip63E + chr3L 3581814 intron Eip63E + chr3L 3581863 intron Eip63E + chr3L_4_3580001 chr3L_3580001 RAL-365 674 chr3L 3601296 3601321 chr3L 3606607 3606632 copia 8 5311 1.5 0.5 1.0 4.0 5336 chr3L 3601296 intron Eip63E + chr3L 3603964 intron Eip63E + chr3L 3606632 intron Eip63E + chr3L_8_3600001 chr3L_3600001 RAL-365 675 chr3L 3795605 3795625 chr3L 3795680 3795702 7 76 2.0 4.0 3.0 1.8 97 chr3L 3795605 intron CG32264 - chr3L 3795654 intron CG32264 - chr3L 3795702 intron CG32264 - chr3L_7_3795001 chr3L_3795001 RAL-365 676 chr3L 3815057 3815074 chr3L 3815137 3815154 6 81 2.5 1.0 1.8 2.1 97 chr3L 3815057 intron,3` UTR Scsalpha +,CR43932 - chr3L 3815106 intron,3` UTR Scsalpha +,CR43932 - chr3L 3815154 intron,intron Scsalpha +,CR43932 - chr3L_6_3815001 chr3L_3815001 RAL-365 677 chr3L 3915029 3915048 chr3L 3915106 3915125 7 77 1.0 3.0 2.0 2.3 96 chr3L 3915029 intron Eip63F-1 - chr3L 3915077 intron Eip63F-1 - chr3L 3915125 intron Eip63F-1 - chr3L_7_3915001 chr3L_3915001 RAL-365 678 chr3L 3921393 3921423 chr3L 3921657 3921687 6 264 0.5 1.0 0.8 3.3 294 chr3L 3921393 intron Eip63F-1 - chr3L 3921540 intron Eip63F-1 - chr3L 3921687 intron Eip63F-1 - chr3L_6_3920001 chr3L_3920001 RAL-365 679 chr3L 4058845 4058861 chr3L 4058925 4058941 4 80 3.0 1.5 2.2 1.2 96 chr3L 4058845 3` UTR CG1136 + chr3L 4058893 3` UTR CG1136 + chr3L 4058941 3` UTR CG1136 + chr3L_4_4055001 chr3L_4055001 RAL-365 680 chr3L 4146810 4146840 chr3L 4146892 4146918 6 81 0.0 0.5 0.2 5.0 108 chr3L 4146810 intergenic not near genes chr3L 4146864 intergenic not near genes chr3L 4146918 intergenic not near genes chr3L_6_4145001 chr3L_4145001 RAL-365 681 chr3L 4229731 4229760 chr3L 4229826 4229855 8 94 1.0 1.0 1.0 4.0 124 chr3L 4229731 intron ImpL2 - chr3L 4229793 intron ImpL2 - chr3L 4229855 intron ImpL2 - chr3L_8_4225001 chr3L_4225001 RAL-365 682 chr3L 4516832 4516855 chr3L 4516909 4516932 5 77 0.0 2.0 1.0 2.5 100 chr3L 4516832 intron Tie - chr3L 4516882 intron Tie - chr3L 4516932 intron Tie - chr3L_5_4515001 chr3L_4515001 RAL-365 683 chr3L 4631644 4631665 chr3L 4631720 4631741 6 76 2.0 2.0 2.0 2.0 97 chr3L 4631644 intron axo - chr3L 4631692 intron axo - chr3L 4631741 intron axo - chr3L_6_4630001 chr3L_4630001 RAL-365 684 chr3L 4657969 4657987 chr3L 4658431 4658448 5 461 1.0 1.0 1.0 2.5 479 chr3L 4657969 intron axo - chr3L 4658208 intron axo - chr3L 4658448 intron axo - chr3L_5_4655001 chr3L_4655001 RAL-365 685 chr3L 4726436 4726460 chr3L 4726517 4726541 4 81 1.0 2.5 1.8 1.4 105 chr3L 4726436 intron RhoGEF64C + chr3L 4726488 intron RhoGEF64C + chr3L 4726541 intron RhoGEF64C + chr3L_4_4725001 chr3L_4725001 RAL-365 686 chr3L 4784959 4784992 chr3L 4785168 4785201 5 209 0.5 0.5 0.5 3.3 242 chr3L 4784959 intron RhoGEF64C + chr3L 4785080 intron RhoGEF64C + chr3L 4785201 intron RhoGEF64C + chr3L_5_4785001 chr3L_4785001 RAL-365 687 chr3L 4858303 4858337 chr3L 4858393 4858427 10 90 2.5 3.5 3.0 2.5 124 chr3L 4858303 intergenic not near genes chr3L 4858365 intergenic not near genes chr3L 4858427 intergenic not near genes chr3L_10_4855001 chr3L_4855001 RAL-365 688 chr3L 4901129 4901155 chr3L 4907319 4907344 diver 9 6190 0.5 0.5 0.5 6.0 6215 chr3L 4901129 intergenic CG13704 + chr3L 4904236 intergenic not near genes chr3L 4907344 intergenic not near genes chr3L_9_4900001 chr3L_4900001 RAL-365 689 chr3L 4958412 4958448 chr3L 4958500 4958536 6 88 1.5 1.0 1.2 2.7 124 chr3L 4958412 intron Con - chr3L 4958474 intron Con - chr3L 4958536 intron Con - chr3L_6_4955001 chr3L_4955001 RAL-365 690 chr3L 5030767 5030791 chr3L 5030843 5030867 9 76 2.5 3.5 3.0 2.2 100 chr3L 5030767 intron Con - chr3L 5030817 intron Con - chr3L 5030867 intron Con - chr3L_9_5030001 chr3L_5030001 RAL-365 691 chr3L 5034156 5034186 chr3L 5043308 5043338 roo 4 9152 1.5 1.5 1.5 1.6 9182 chr3L 5034156 intron Con - chr3L 5038747 intron Con - chr3L 5043338 intron Con - chr3L_4_5035001 chr3L_5035001 RAL-365 692 chr3L 5045459 5045481 chr3L 5050238 5050262 Doc 4 4780 1.5 0.0 0.8 2.2 4803 chr3L 5045459 intron Con - chr3L 5047860 intron Con - chr3L 5050262 intron Con - chr3L_4_5045001 chr3L_5045001 RAL-365 693 chr3L 5103613 5103632 chr3L 5103693 5103712 6 80 3.5 0.0 1.8 2.1 99 chr3L 5103613 intergenic not near genes chr3L 5103662 intergenic not near genes chr3L 5103712 intergenic not near genes chr3L_6_5100001 chr3L_5100001 RAL-365 694 chr3L 5180631 5180667 chr3L 5180732 5180768 7 101 1.0 1.5 1.2 3.2 137 chr3L 5180631 intron shep - chr3L 5180700 intron shep - chr3L 5180768 intron shep - chr3L_7_5180001 chr3L_5180001 RAL-365 695 chr3L 5251861 5251870 chr3L 5251940 5251949 4 79 0.0 2.0 1.0 2.0 88 chr3L 5251861 intron shep - chr3L 5251905 intron shep - chr3L 5251949 intron shep - chr3L_4_5250001 chr3L_5250001 RAL-365 696 chr3L 5265224 5265256 chr3L 5265416 5265448 9 192 1.5 4.5 3.0 2.2 224 chr3L 5265224 intron shep - chr3L 5265336 intron shep - chr3L 5265448 intron shep - chr3L_9_5265001 chr3L_5265001 RAL-365 697 chr3L 5381832 5381862 chr3L 5381912 5381942 5 80 0.0 1.5 0.8 2.8 110 chr3L 5381832 exon Ir64a - chr3L 5381887 exon Ir64a - chr3L 5381942 exon Ir64a - chr3L_5_5380001 chr3L_5380001 RAL-365 698 chr3L 5388201 5388222 chr3L 5388524 5388546 6 324 5.0 3.5 4.2 1.2 345 chr3L 5388201 intergenic not near genes chr3L 5388374 intergenic not near genes chr3L 5388546 intergenic not near genes chr3L_6_5385001 chr3L_5385001 RAL-365 699 chr3L 5469452 5469476 chr3L 5470252 5470276 6 800 4.0 3.5 3.8 1.2 824 chr3L 5469452 intergenic not near genes chr3L 5469864 intergenic not near genes chr3L 5470276 intergenic not near genes chr3L_6_5465001 chr3L_5465001 RAL-365 700 chr3L 5516411 5516430 chr3L 5516505 5516525 5 95 3.0 1.0 2.0 1.7 114 chr3L 5516411 intron Lkr - chr3L 5516468 intron Lkr - chr3L 5516525 intron Lkr - chr3L_5_5515001 chr3L_5515001 RAL-365 701 chr3L 5537730 5537755 chr3L 5538071 5538097 jockey 6 342 3.0 3.5 3.2 1.4 367 chr3L 5537730 intergenic not near genes chr3L 5537914 intergenic CG10625 - chr3L 5538097 intergenic CG10625 - chr3L_6_5535001 chr3L_5535001 RAL-365 702 chr3L 5683263 5683290 chr3L 5683350 5683377 7 87 0.5 1.0 0.8 3.9 114 chr3L 5683263 intron sif + chr3L 5683320 intron sif + chr3L 5683377 intron sif + chr3L_7_5680001 chr3L_5680001 RAL-365 703 chr3L 5788724 5788742 chr3L 5788804 5788822 4 80 0.5 5.0 2.8 1.1 98 chr3L 5788724 intergenic not near genes chr3L 5788773 intergenic not near genes chr3L 5788822 intergenic not near genes chr3L_4_5785001 chr3L_5785001 RAL-365 704 chr3L 5855570 5855571 chr3L 22908067 22908067 4 17052497 5.5 8.5 7.0 0.5 17052497 chr3L 5855570 intergenic not near genes chr3L 14381818 intergenic CG43120 + chr3L 22908067 intergenic not near genes chr3L_4_14380001 chr3L_14380001 RAL-365 705 chr3L 5926320 5926349 chr3L 5926510 5926539 BS 9 190 2.0 4.5 3.2 2.1 219 chr3L 5926320 intron Vap-33B + chr3L 5926430 intron Vap-33B + chr3L 5926539 intron Vap-33B + chr3L_9_5925001 chr3L_5925001 RAL-365 706 chr3L 5980591 5980615 chr3L 5980678 5980702 4 87 1.0 3.5 2.2 1.2 111 chr3L 5980591 intergenic not near genes chr3L 5980646 intergenic not near genes chr3L 5980702 intergenic not near genes chr3L_4_5980001 chr3L_5980001 RAL-365 707 chr3L 5992594 5992612 chr3L 5992696 5992714 6 102 1.5 1.5 1.5 2.4 120 chr3L 5992594 intergenic not near genes chr3L 5992654 intergenic not near genes chr3L 5992714 intergenic not near genes chr3L_6_5990001 chr3L_5990001 RAL-365 708 chr3L 6052647 6052668 chr3L 6052732 6052753 4 85 4.5 5.5 5.0 0.7 106 chr3L 6052647 exon Jon65Aii + chr3L 6052700 intron Jon65Aii + chr3L 6052753 exon Jon65Aii + chr3L_4_6050001 chr3L_6050001 RAL-365 709 chr3L 6220921 6220937 chr3L 6230073 6230089 roo 5 9152 7.0 3.5 5.2 0.8 9168 chr3L 6220921 5` UTR pncr008:3L + chr3L 6225505 intergenic not near genes chr3L 6230089 intergenic not near genes chr3L_5_6225001 chr3L_6225001 RAL-365 710 chr3L 6335009 6335042 chr3L 6335480 6335513 297 4 471 1.0 2.5 1.8 1.4 504 chr3L 6335009 intron CG13300 - chr3L 6335261 intron CG13300 - chr3L 6335513 intron CG13300 - chr3L_4_6335001 chr3L_6335001 RAL-365 711 chr3L 6353377 6353393 chr3L 6353457 6353471 5 80 2.5 1.0 1.8 1.8 94 chr3L 6353377 intergenic not near genes chr3L 6353424 intergenic not near genes chr3L 6353471 intergenic not near genes chr3L_5_6350001 chr3L_6350001 RAL-365 712 chr3L 6405670 6405688 chr3L 6432134 6432152 roo 4 26464 1.0 1.0 1.0 2.0 26482 chr3L 6405670 intron CG42747 + chr3L 6418911 intron CG42747 + chr3L 6432152 intron CG42747 + chr3L_4_6415001 chr3L_6415001 RAL-365 713 chr3L 6652081 6652106 chr3L 6652159 6652184 7 78 1.5 2.5 2.0 2.3 103 chr3L 6652081 intergenic not near genes chr3L 6652132 intergenic not near genes chr3L 6652184 intergenic not near genes chr3L_7_6650001 chr3L_6650001 RAL-365 714 chr3L 6781119 6781149 chr3L 6783132 6783162 Doc 11 2012 3.0 1.5 2.2 3.4 2043 chr3L 6781119 intergenic not near genes chr3L 6782140 intergenic not near genes chr3L 6783162 intergenic not near genes chr3L_11_6780001 chr3L_6780001 RAL-365 715 chr3L 6879596 6879615 chr3L 6879672 6879691 5 75 0.0 4.0 2.0 1.7 95 chr3L 6879596 intergenic not near genes chr3L 6879644 intergenic not near genes chr3L 6879691 intergenic not near genes chr3L_5_6875001 chr3L_6875001 RAL-365 716 chr3L 6887519 6887547 chr3L 6895011 6895039 roo 8 7492 5.0 0.5 2.8 2.1 7520 chr3L 6887519 intergenic not near genes chr3L 6891279 intergenic not near genes chr3L 6895039 intergenic not near genes chr3L_8_6890001 chr3L_6890001 RAL-365 717 chr3L 6994896 6994916 chr3L 6995507 6995527 BS 4 611 0.0 5.0 2.5 1.1 631 chr3L 6994896 intergenic bin + chr3L 6995212 intergenic not near genes chr3L 6995527 intergenic not near genes chr3L_4_6995001 chr3L_6995001 RAL-365 718 chr3L 7022024 7022052 chr3L 7022232 7022259 4 208 0.0 1.0 0.5 2.7 235 chr3L 7022024 intron Mp + chr3L 7022142 intron Mp + chr3L 7022259 intron Mp + chr3L_4_7020001 chr3L_7020001 RAL-365 719 chr3L 7079808 7079837 chr3L 7079918 7079949 8 111 2.0 1.0 1.5 3.2 141 chr3L 7079808 intergenic not near genes chr3L 7079878 intergenic not near genes chr3L 7079949 intergenic not near genes chr3L_8_7075001 chr3L_7075001 RAL-365 720 chr3L 7112585 7112618 chr3L 7112672 7112705 8 87 1.5 3.0 2.2 2.5 120 chr3L 7112585 intron form3 + chr3L 7112645 intron form3 + chr3L 7112705 intron form3 + chr3L_8_7110001 chr3L_7110001 RAL-365 721 chr3L 7129961 7129981 chr3L 7130153 7130173 BS 5 192 1.5 1.5 1.5 2.0 212 chr3L 7129961 intergenic CG15829 + chr3L 7130067 intergenic CG15829 + chr3L 7130173 intergenic CG15829 + chr3L_5_7130001 chr3L_7130001 RAL-365 722 chr3L 7244932 7244959 chr3L 7245023 7245051 6 92 4.5 2.0 3.2 1.4 119 chr3L 7244932 exon mei-P22 + chr3L 7244992 exon mei-P22 + chr3L 7245051 exon mei-P22 + chr3L_6_7240001 chr3L_7240001 RAL-365 723 chr3L 7277116 7277139 chr3L 7277218 7277241 6 102 0.5 2.0 1.2 2.7 125 chr3L 7277116 exon unc-13-4A - chr3L 7277178 intron unc-13-4A - chr3L 7277241 intron unc-13-4A - chr3L_6_7275001 chr3L_7275001 RAL-365 724 chr3L 7371177 7371203 chr3L 7371261 7371286 5 84 1.5 1.0 1.2 2.3 109 chr3L 7371177 intron akirin + chr3L 7371232 intron akirin + chr3L 7371286 intron akirin + chr3L_5_7370001 chr3L_7370001 RAL-365 725 chr3L 7397886 7397908 chr3L 7397986 7398014 6 106 1.5 1.0 1.2 2.7 128 chr3L 7397886 exon CG32379 + chr3L 7397950 exon CG32379 + chr3L 7398014 exon CG32379 + chr3L_6_7395001 chr3L_7395001 RAL-365 726 chr3L 7498753 7498769 chr3L 7503531 7503547 F-element 5 4778 2.0 1.5 1.8 1.8 4794 chr3L 7498753 5` UTR CG8539 - chr3L 7501150 intergenic not near genes chr3L 7503547 intergenic not near genes chr3L_5_7500001 chr3L_7500001 RAL-365 727 chr3L 7572282 7572314 chr3L 7572369 7572401 11 87 2.0 1.5 1.8 3.9 119 chr3L 7572282 intergenic not near genes chr3L 7572342 intergenic not near genes chr3L 7572401 intergenic not near genes chr3L_11_7570001 chr3L_7570001 RAL-365 728 chr3L 7591146 7591180 chr3L 7591236 7591271 5 90 0.5 2.0 1.2 2.3 125 chr3L 7591146 intergenic CG7716 - chr3L 7591208 intergenic CG7716 - chr3L 7591271 intergenic CG7716 - chr3L_5_7590001 chr3L_7590001 RAL-365 729 chr3L 7744714 7744736 chr3L 7744806 7744828 5 92 1.0 1.0 1.0 2.5 114 chr3L 7744714 intron CG32373 + chr3L 7744771 intron CG32373 + chr3L 7744828 intron CG32373 + chr3L_5_7740001 chr3L_7740001 RAL-365 730 chr3L 7793711 7793740 chr3L 7800763 7800792 297 6 7052 1.5 2.5 2.0 2.0 7081 chr3L 7793711 intron CG32369 - chr3L 7797252 intron CG32369 - chr3L 7800792 intron CG32369 - chr3L_6_7795001 chr3L_7795001 RAL-365 731 chr3L 7849549 7849566 chr3L 7851607 7851624 4 2058 9.0 11.5 10.2 0.4 2075 chr3L 7849549 intron Pdp1 - chr3L 7850586 intron Pdp1 - chr3L 7851624 intron Pdp1 - chr3L_4_7850001 chr3L_7850001 RAL-365 732 chr3L 8019701 8019734 chr3L 8024113 8024147 NOF 6 4412 2.0 1.5 1.8 2.1 4446 chr3L 8019701 intron nmo + chr3L 8021924 intron nmo + chr3L 8024147 intron nmo + chr3L_6_8020001 chr3L_8020001 RAL-365 733 chr3L 8062958 8062969 chr3L 8063094 8063105 4 136 0.0 1.0 0.5 2.7 147 chr3L 8062958 intergenic not near genes chr3L 8063032 intergenic not near genes chr3L 8063105 intergenic not near genes chr3L_4_8060001 chr3L_8060001 RAL-365 734 chr3L 8178519 8178529 chr3L 8178596 8178606 6 77 0.5 0.0 0.2 5.0 87 chr3L 8178519 intergenic Nmt -,mthl7 - chr3L 8178562 intergenic mthl7 -,Nmt - chr3L 8178606 intergenic mthl7 -,Nmt - chr3L_6_8175001 chr3L_8175001 RAL-365 735 chr3L 8243837 8243849 chr3L 8243919 8243932 5 83 0.0 0.5 0.2 4.2 95 chr3L 8243837 intron Dscam4 + chr3L 8243884 intron Dscam4 + chr3L 8243932 intron Dscam4 + chr3L_5_8240001 chr3L_8240001 RAL-365 736 chr3L 8456473 8456487 chr3L 8456568 8456582 8 95 4.0 6.0 5.0 1.3 109 chr3L 8456473 intron Gug + chr3L 8456528 intron Gug + chr3L 8456582 intron Gug + chr3L_8_8455001 chr3L_8455001 RAL-365 737 chr3L 8498298 8498314 chr3L 8505765 8505781 blood 4 7467 3.0 2.0 2.5 1.1 7483 chr3L 8498298 intron CG43163 - chr3L 8502040 intron CG43163 - chr3L 8505781 intron CG43163 - chr3L_4_8500001 chr3L_8500001 RAL-365 738 chr3L 8615029 8615057 chr3L 8615108 8615136 6 79 2.5 1.5 2.0 2.0 107 chr3L 8615029 exon CG6282 + chr3L 8615082 intron CG6282 + chr3L 8615136 intron CG6282 + chr3L_6_8615001 chr3L_8615001 RAL-365 739 chr3L 8697149 8697182 chr3L 8697343 8697376 9 194 5.0 2.5 3.8 1.9 227 chr3L 8697149 intergenic not near genes chr3L 8697262 intergenic not near genes chr3L 8697376 intergenic not near genes chr3L_9_8695001 chr3L_8695001 RAL-365 740 chr3L 8791285 8791292 chr3L 8796705 8796712 I-element 4 5420 2.5 0.0 1.2 1.8 5427 chr3L 8791285 exon Fhos + chr3L 8793998 intron Fhos + chr3L 8796712 intron Fhos + chr3L_4_8790001 chr3L_8790001 RAL-365 741 chr3L 9003944 9003974 chr3L 9004029 9004059 6 85 1.5 0.5 1.0 3.0 115 chr3L 9003944 intergenic not near genes chr3L 9004002 intergenic not near genes chr3L 9004059 intergenic not near genes chr3L_6_9000001 chr3L_9000001 RAL-365 742 chr3L 9017360 9017392 chr3L 9017437 9017469 4 76 2.0 1.0 1.5 1.6 109 chr3L 9017360 intron Doc2 - chr3L 9017414 intron Doc2 - chr3L 9017469 intron Doc2 - chr3L_4_9015001 chr3L_9015001 RAL-365 743 chr3L 9056597 9056619 chr3L 9056677 9056699 5 80 4.0 0.0 2.0 1.7 102 chr3L 9056597 intron Argk - chr3L 9056648 intron Argk - chr3L 9056699 intron Argk - chr3L_5_9055001 chr3L_9055001 RAL-365 744 chr3L 9076925 9076958 chr3L 9084485 9084518 412 9 7560 1.5 1.0 1.2 4.1 7593 chr3L 9076925 exon Tequila + chr3L 9080722 intron Tequila + chr3L 9084518 exon Tequila + chr3L_9_9080001 chr3L_9080001 RAL-365 745 chr3L 9129195 9129209 chr3L 9129275 9129289 5 80 2.0 1.0 1.5 2.0 94 chr3L 9129195 intron bol - chr3L 9129242 intron bol - chr3L 9129289 intron bol - chr3L_5_9125001 chr3L_9125001 RAL-365 746 chr3L 9130563 9130580 chr3L 9134324 9134340 412 10 3761 2.5 4.0 3.2 2.4 3777 chr3L 9130563 intergenic bol - chr3L 9132452 intergenic not near genes chr3L 9134340 intergenic Dhpr + chr3L_10_9130001 chr3L_9130001 RAL-365 747 chr3L 9164702 9164729 chr3L 9166169 9166196 hobo 10 1467 2.5 1.0 1.8 3.6 1494 chr3L 9164702 intron Rdl - chr3L 9165449 intron Rdl - chr3L 9166196 intron Rdl - chr3L_10_9165001 chr3L_9165001 RAL-365 748 chr3L 9219240 9219275 chr3L 9219912 9219947 jockey 8 672 5.0 2.0 3.5 1.8 707 chr3L 9219240 intergenic not near genes chr3L 9219594 intergenic not near genes chr3L 9219947 intergenic not near genes chr3L_8_9215001 chr3L_9215001 RAL-365 749 chr3L 9348478 9348703 chr3L 9348979 9349063 4 466 0.0 0.0 0.0 4.0 585 chr3L 9348478 intergenic PGRP-LC + chr3L 9348770 intergenic PGRP-LC + chr3L 9349063 intergenic not near genes chr3L_4_9345001 chr3L_9345001 RAL-365 750 chr3L 9390854 9390870 chr3L 9390984 9391000 6 130 2.0 0.0 1.0 3.0 146 chr3L 9390854 intron CG4080 - chr3L 9390927 intron CG4080 - chr3L 9391000 intron CG4080 - chr3L_6_9390001 chr3L_9390001 RAL-365 751 chr3L 9419898 9419926 chr3L 9419976 9420002 6 78 1.0 1.0 1.0 3.0 104 chr3L 9419898 intron CG3967 - chr3L 9419950 intron CG3967 - chr3L 9420002 intron CG3967 - chr3L_6_9415001 chr3L_9415001 RAL-365 752 chr3L 9443515 9443537 chr3L 9445302 9445324 S-element 4 1787 3.0 4.0 3.5 0.9 1809 chr3L 9443515 intron CG33926 + chr3L 9444420 intron CG33926 + chr3L 9445324 intron CG33926 + chr3L_4_9440001 chr3L_9440001 RAL-365 753 chr3L 9501701 9501733 chr3L 9502187 9502219 roo 7 486 1.0 2.0 1.5 2.8 518 chr3L 9501701 intron path - chr3L 9501960 intron path - chr3L 9502219 intron path - chr3L_7_9500001 chr3L_9500001 RAL-365 754 chr3L 9502611 9502626 chr3L 9502696 9502711 4 85 2.5 2.0 2.2 1.2 100 chr3L 9502611 intron path - chr3L 9502661 intron path - chr3L 9502711 intron path - chr3L_4_9500001 chr3L_9500001 RAL-365 755 chr3L 9533760 9533785 chr3L 9541320 9541345 412 4 7558 1.5 1.5 1.5 1.6 7585 chr3L 9533760 intergenic not near genes chr3L 9537552 intergenic not near genes chr3L 9541345 intergenic not near genes chr3L_4_9535001 chr3L_9535001 RAL-365 756 chr3L 9571904 9571927 chr3L 9572252 9572275 jockey 5 348 1.0 1.0 1.0 2.5 371 chr3L 9571904 intron CG42673 + chr3L 9572090 intron CG42673 + chr3L 9572275 intron CG42673 + chr3L_5_9570001 chr3L_9570001 RAL-365 757 chr3L 9575911 9575943 chr3L 9580991 9581023 jockey 8 5080 0.5 1.5 1.0 4.0 5112 chr3L 9575911 intron CG42673 + chr3L 9578467 intron CG42673 + chr3L 9581023 intron CG42673 + chr3L_8_9575001 chr3L_9575001 RAL-365 758 chr3L 9646808 9646837 chr3L 9646906 9646935 5 98 2.5 0.5 1.5 2.0 127 chr3L 9646808 intron,intron fry -,CG33696 + chr3L 9646872 intron,intron fry -,CG33696 + chr3L 9646935 intron,intron fry -,CG33696 + chr3L_5_9645001 chr3L_9645001 RAL-365 759 chr3L 9918879 9918912 chr3L 9918974 9919007 9 95 2.5 1.5 2.0 3.0 128 chr3L 9918879 intron CG34356 + chr3L 9918943 intron CG34356 + chr3L 9919007 intron CG34356 + chr3L_9_9915001 chr3L_9915001 RAL-365 760 chr3L 9929671 9929701 chr3L 9938451 9938480 roo 4 8779 2.0 2.5 2.2 1.2 8809 chr3L 9929671 intron CG34356 + chr3L 9934076 intron CG34356 + chr3L 9938480 intron CG34356 + chr3L_4_9930001 chr3L_9930001 RAL-365 761 chr3L 9980258 9980293 chr3L 9980348 9980382 8 90 1.5 1.5 1.5 3.2 124 chr3L 9980258 intron dpr6 + chr3L 9980320 intron dpr6 + chr3L 9980382 intron dpr6 + chr3L_8_9980001 chr3L_9980001 RAL-365 762 chr3L 10003159 10003174 chr3L 10003256 10003271 5 97 2.0 2.5 2.2 1.6 112 chr3L 10003159 intron dpr6 + chr3L 10003215 intron dpr6 + chr3L 10003271 intron dpr6 + chr3L_5_10000001 chr3L_10000001 RAL-365 763 chr3L 10020890 10020911 chr3L 10020981 10021003 7 93 1.0 3.0 2.0 2.3 113 chr3L 10020890 intron dpr6 + chr3L 10020946 intron dpr6 + chr3L 10021003 intron dpr6 + chr3L_7_10020001 chr3L_10020001 RAL-365 764 chr3L 10099086 10099103 chr3L 10099171 10099188 5 85 2.5 0.5 1.5 2.0 102 chr3L 10099086 intron dpr6 + chr3L 10099137 intron dpr6 + chr3L 10099188 intron dpr6 + chr3L_5_10095001 chr3L_10095001 RAL-365 765 chr3L 10130228 10130258 chr3L 10130309 10130339 11 81 1.5 1.0 1.2 5.0 111 chr3L 10130228 intron dpr6 + chr3L 10130284 intron dpr6 + chr3L 10130339 intron dpr6 + chr3L_11_10130001 chr3L_10130001 RAL-365 766 chr3L 10222741 10222772 chr3L 10222821 10222852 4 80 0.0 0.5 0.2 3.3 111 chr3L 10222741 intron scramb1 - chr3L 10222796 intron scramb1 - chr3L 10222852 intron scramb1 - chr3L_4_10220001 chr3L_10220001 RAL-365 767 chr3L 10276352 10276366 chr3L 10276430 10276444 4 78 1.5 2.0 1.8 1.4 92 chr3L 10276352 intergenic not near genes chr3L 10276398 intergenic not near genes chr3L 10276444 intergenic not near genes chr3L_4_10275001 chr3L_10275001 RAL-365 768 chr3L 10298673 10298701 chr3L 10298760 10298788 5 87 0.0 1.0 0.5 3.3 115 chr3L 10298673 intergenic not near genes chr3L 10298730 intergenic not near genes chr3L 10298788 intergenic not near genes chr3L_5_10295001 chr3L_10295001 RAL-365 769 chr3L 10308758 10308772 chr3L 10308835 10308849 7 77 1.0 1.5 1.2 3.2 91 chr3L 10308758 intergenic not near genes chr3L 10308804 intergenic not near genes chr3L 10308849 intergenic not near genes chr3L_7_10305001 chr3L_10305001 RAL-365 770 chr3L 10386387 10386417 chr3L 10386464 10386494 7 77 2.5 3.0 2.8 1.8 107 chr3L 10386387 intergenic CR45245 + chr3L 10386440 intergenic CR45245 + chr3L 10386494 5` UTR CR45245 + chr3L_7_10385001 chr3L_10385001 RAL-365 771 chr3L 10414946 10414977 chr3L 10417317 10417349 Doc 8 2371 2.0 3.0 2.5 2.3 2403 chr3L 10414946 intergenic CG12362 + chr3L 10416148 intergenic not near genes chr3L 10417349 intergenic not near genes chr3L_8_10415001 chr3L_10415001 RAL-365 772 chr3L 10417568 10417606 chr3L 10417645 10417683 8 76 1.5 2.0 1.8 2.9 115 chr3L 10417568 intergenic not near genes chr3L 10417626 intergenic not near genes chr3L 10417683 intergenic not near genes chr3L_8_10415001 chr3L_10415001 RAL-365 773 chr3L 10526637 10526648 chr3L 10526715 10526729 4 79 0.5 1.0 0.8 2.2 92 chr3L 10526637 intron A2bp1 + chr3L 10526683 intron A2bp1 + chr3L 10526729 intron A2bp1 + chr3L_4_10525001 chr3L_10525001 RAL-365 774 chr3L 10537231 10537255 chr3L 10537307 10537331 4 76 1.0 2.0 1.5 1.6 100 chr3L 10537231 intron A2bp1 + chr3L 10537281 intron A2bp1 + chr3L 10537331 intron A2bp1 + chr3L_4_10535001 chr3L_10535001 RAL-365 775 chr3L 10547593 10547615 chr3L 10547676 10547698 6 83 1.0 3.0 2.0 2.0 105 chr3L 10547593 intron A2bp1 + chr3L 10547646 intron A2bp1 + chr3L 10547698 intron A2bp1 + chr3L_6_10545001 chr3L_10545001 RAL-365 776 chr3L 10601214 10601226 chr3L 10601307 10601316 6 92 1.5 4.0 2.8 1.6 102 chr3L 10601214 intergenic not near genes chr3L 10601265 intergenic not near genes chr3L 10601316 intergenic not near genes chr3L_6_10600001 chr3L_10600001 RAL-365 777 chr3L 10672455 10672461 chr3L 10672880 10672887 5 426 3.5 2.5 3.0 1.2 432 chr3L 10672455 intron simj + chr3L 10672671 intron simj + chr3L 10672887 intron simj + chr3L_5_10670001 chr3L_10670001 RAL-365 778 chr3L 10678726 10678750 chr3L 10678809 10678833 6 83 1.0 1.0 1.0 3.0 107 chr3L 10678726 intron simj + chr3L 10678780 intron simj + chr3L 10678833 intron simj + chr3L_6_10675001 chr3L_10675001 RAL-365 779 chr3L 10795060 10795082 chr3L 10795140 10795162 5 80 1.5 0.0 0.8 2.8 102 chr3L 10795060 5` UTR CR44546 + chr3L 10795111 5` UTR CR44546 + chr3L 10795162 5` UTR CR44546 + chr3L_5_10795001 chr3L_10795001 RAL-365 780 chr3L 10889224 10889255 chr3L 10889304 10889335 8 80 2.5 0.5 1.5 3.2 111 chr3L 10889224 intergenic not near genes chr3L 10889280 intergenic not near genes chr3L 10889335 intergenic not near genes chr3L_8_10885001 chr3L_10885001 RAL-365 781 chr3L 10937858 10937877 chr3L 10937935 10937954 8 77 2.5 3.0 2.8 2.1 96 chr3L 10937858 intergenic not near genes chr3L 10937906 intergenic not near genes chr3L 10937954 intergenic not near genes chr3L_8_10935001 chr3L_10935001 RAL-365 782 chr3L 10971523 10971541 chr3L 10971868 10971885 5 344 1.0 1.0 1.0 2.5 362 chr3L 10971523 intergenic not near genes chr3L 10971704 intergenic not near genes chr3L 10971885 intergenic not near genes chr3L_5_10970001 chr3L_10970001 RAL-365 783 chr3L 11135532 11135799 chr3L 11135761 11135884 7 105 0.0 0.0 0.0 7.0 352 chr3L 11135532 intergenic CG14143 + chr3L 11135708 intergenic CG14143 +,CG32082 + chr3L 11135884 intergenic CG32082 +,CG14143 + chr3L_7_11135001 chr3L_11135001 RAL-365 784 chr3L 11279722 11279745 chr3L 11279801 11279826 6 79 1.0 1.0 1.0 3.0 104 chr3L 11279722 intergenic not near genes chr3L 11279774 intergenic not near genes chr3L 11279826 intergenic not near genes chr3L_6_11275001 chr3L_11275001 RAL-365 785 chr3L 11579558 11579576 chr3L 11579664 11579681 5 106 1.5 0.5 1.0 2.5 123 chr3L 11579558 intergenic CG43390 - chr3L 11579620 intergenic CG43390 - chr3L 11579681 intergenic CG43390 - chr3L_5_11575001 chr3L_11575001 RAL-365 786 chr3L 11723082 11723114 chr3L 11727877 11727909 Doc 9 4795 4.0 3.0 3.5 2.0 4827 chr3L 11723082 3` UTR Bmcp + chr3L 11725496 intron Bmcp + chr3L 11727909 3` UTR Bmcp + chr3L_9_11725001 chr3L_11725001 RAL-365 787 chr3L 11744017 11744041 chr3L 11744125 11744149 5 108 2.0 0.0 1.0 2.5 132 chr3L 11744017 exon CG6024 - chr3L 11744083 intron CG6024 - chr3L 11744149 intron CG6024 - chr3L_5_11740001 chr3L_11740001 RAL-365 788 chr3L 11846403 11846411 chr3L 11846510 11846519 4 108 0.0 2.0 1.0 2.0 116 chr3L 11846403 intergenic not near genes chr3L 11846461 intergenic not near genes chr3L 11846519 intergenic not near genes chr3L_4_11845001 chr3L_11845001 RAL-365 789 chr3L 11850141 11850168 chr3L 11850236 11850263 7 95 0.5 0.0 0.2 5.8 122 chr3L 11850141 intergenic not near genes chr3L 11850202 intergenic CG44837 - chr3L 11850263 intergenic CG44837 - chr3L_7_11850001 chr3L_11850001 RAL-365 790 chr3L 11864560 11864583 chr3L 11865853 11865878 pogo 7 1295 2.0 1.5 1.8 2.5 1318 chr3L 11864560 intron CG44837 - chr3L 11865219 intron CG44837 - chr3L 11865878 intron CG44837 - chr3L_7_11865001 chr3L_11865001 RAL-365 791 chr3L 11872240 11872259 chr3L 11872337 11872356 5 97 1.0 2.5 1.8 1.8 116 chr3L 11872240 intron CG44837 - chr3L 11872298 intron CG44837 - chr3L 11872356 intron CG44837 - chr3L_5_11870001 chr3L_11870001 RAL-365 792 chr3L 11905127 11905135 chr3L 11905209 11905217 4 82 1.0 3.5 2.2 1.2 90 chr3L 11905127 intron CG44837 - chr3L 11905172 intron CG44837 - chr3L 11905217 intron CG44837 - chr3L_4_11905001 chr3L_11905001 RAL-365 793 chr3L 11958611 11958636 chr3L 11958808 11958833 6 197 1.5 1.5 1.5 2.4 222 chr3L 11958611 exon CG43294 + chr3L 11958722 exon CG43294 + chr3L 11958833 3` UTR CG43294 + chr3L_6_11955001 chr3L_11955001 RAL-365 794 chr3L 12013913 12013937 chr3L 12014004 12014027 4 90 1.5 1.5 1.5 1.6 114 chr3L 12013913 intron rols - chr3L 12013970 intron rols - chr3L 12014027 intron rols - chr3L_4_12010001 chr3L_12010001 RAL-365 795 chr3L 12046084 12046113 chr3L 12046162 12046191 8 78 1.0 1.0 1.0 4.0 107 chr3L 12046084 intron rols - chr3L 12046138 intron rols - chr3L 12046191 intron rols - chr3L_8_12045001 chr3L_12045001 RAL-365 796 chr3L 12075430 12075448 chr3L 12075519 12075537 4 88 3.0 0.0 1.5 1.6 107 chr3L 12075430 intron Sema-5c - chr3L 12075484 intron Sema-5c - chr3L 12075537 intron Sema-5c - chr3L_4_12075001 chr3L_12075001 RAL-365 797 chr3L 12245372 12245399 chr3L 12245596 12245625 4 226 2.5 2.0 2.2 1.2 253 chr3L 12245372 intron app - chr3L 12245498 intron app - chr3L 12245625 intron,3` UTR app -,CR43991 - chr3L_4_12245001 chr3L_12245001 RAL-365 798 chr3L 12317425 12317452 chr3L 12317526 12317553 7 101 2.5 5.5 4.0 1.4 128 chr3L 12317425 intergenic not near genes chr3L 12317489 intergenic not near genes chr3L 12317553 intergenic not near genes chr3L_7_12315001 chr3L_12315001 RAL-365 799 chr3L 12541883 12541908 chr3L 12541966 12541989 5 83 1.0 0.5 0.8 2.8 106 chr3L 12541883 intron,5` UTR sowah -,CR43612 + chr3L 12541936 intron,5` UTR sowah -,CR43612 + chr3L 12541989 intron,5` UTR sowah -,CR43612 + chr3L_5_12540001 chr3L_12540001 RAL-365 800 chr3L 12612579 12612612 chr3L 12612671 12612705 9 93 3.5 2.0 2.8 2.4 126 chr3L 12612579 intron caup + chr3L 12612642 intron caup + chr3L 12612705 intron caup + chr3L_9_12610001 chr3L_12610001 RAL-365 801 chr3L 12626173 12626188 chr3L 12626282 12626297 5 109 0.0 0.0 0.0 5.0 124 chr3L 12626173 intergenic not near genes chr3L 12626235 intergenic not near genes chr3L 12626297 intergenic not near genes chr3L_5_12625001 chr3L_12625001 RAL-365 802 chr3L 12788419 12788434 chr3L 12788538 12788554 5 119 1.0 1.0 1.0 2.5 135 chr3L 12788419 intron Atg1 - chr3L 12788486 intron Atg1 - chr3L 12788554 exon Atg1 - chr3L_5_12785001 chr3L_12785001 RAL-365 803 chr3L 12919276 12919299 chr3L 12924749 12924768 Rt1c 8 5472 1.5 0.0 0.8 4.4 5492 chr3L 12919276 intergenic not near genes chr3L 12922022 intergenic not near genes chr3L 12924768 intergenic not near genes chr3L_8_12920001 chr3L_12920001 RAL-365 804 chr3L 12930626 12930650 chr3L 12930705 12930729 8 79 1.5 2.5 2.0 2.7 103 chr3L 12930626 intergenic not near genes chr3L 12930678 intergenic not near genes chr3L 12930729 intergenic not near genes chr3L_8_12930001 chr3L_12930001 RAL-365 805 chr3L 12941990 12941997 chr3L 12942097 12942104 4 107 1.5 4.5 3.0 1.0 114 chr3L 12941990 intergenic not near genes chr3L 12942047 intergenic not near genes chr3L 12942104 intergenic not near genes chr3L_4_12940001 chr3L_12940001 RAL-365 806 chr3L 12955130 12955162 chr3L 12955206 12955238 11 76 1.0 0.5 0.8 6.1 108 chr3L 12955130 intergenic CG10752 - chr3L 12955184 intergenic not near genes chr3L 12955238 intergenic not near genes chr3L_11_12955001 chr3L_12955001 RAL-365 807 chr3L 12957790 12957816 chr3L 12962272 12962298 copia 9 4482 2.0 3.0 2.5 2.6 4508 chr3L 12957790 intergenic not near genes chr3L 12960044 intergenic not near genes chr3L 12962298 intergenic not near genes chr3L_9_12960001 chr3L_12960001 RAL-365 808 chr3L 12978761 12978778 chr3L 12978840 12978857 5 79 2.0 0.0 1.0 2.5 96 chr3L 12978761 intergenic not near genes chr3L 12978809 intergenic not near genes chr3L 12978857 intergenic not near genes chr3L_5_12975001 chr3L_12975001 RAL-365 809 chr3L 13142147 13142162 chr3L 13142232 13142247 5 85 1.0 2.5 1.8 1.8 100 chr3L 13142147 intergenic not near genes chr3L 13142197 intergenic not near genes chr3L 13142247 intergenic not near genes chr3L_5_13140001 chr3L_13140001 RAL-365 810 chr3L 13267289 13267307 chr3L 13267402 13267420 5 113 3.5 1.0 2.2 1.6 131 chr3L 13267289 intron caps + chr3L 13267354 intron caps + chr3L 13267420 intron caps + chr3L_5_13265001 chr3L_13265001 RAL-365 811 chr3L 13280297 13280332 chr3L 13280400 13280432 12 103 2.0 1.0 1.5 4.8 135 chr3L 13280297 intergenic not near genes chr3L 13280364 intergenic not near genes chr3L 13280432 intergenic not near genes chr3L_12_13280001 chr3L_13280001 RAL-365 812 chr3L 13294555 13294582 chr3L 13294676 13294702 10 121 0.5 2.5 1.5 4.0 147 chr3L 13294555 intergenic not near genes chr3L 13294628 intergenic not near genes chr3L 13294702 intergenic not near genes chr3L_10_13290001 chr3L_13290001 RAL-365 813 chr3L 13372951 13372972 chr3L 13373038 13373060 6 88 3.0 2.5 2.8 1.6 109 chr3L 13372951 intergenic not near genes chr3L 13373006 intergenic not near genes chr3L 13373060 intergenic not near genes chr3L_6_13370001 chr3L_13370001 RAL-365 814 chr3L 13400527 13400544 chr3L 13400603 13400620 4 76 2.0 1.5 1.8 1.4 93 chr3L 13400527 intron sens - chr3L 13400574 intron sens - chr3L 13400620 intron sens - chr3L_4_13400001 chr3L_13400001 RAL-365 815 chr3L 13677529 13677559 chr3L 13677606 13677636 5 77 1.0 1.5 1.2 2.3 107 chr3L 13677529 intron bru-3 - chr3L 13677582 intron bru-3 - chr3L 13677636 intron bru-3 - chr3L_5_13675001 chr3L_13675001 RAL-365 816 chr3L 13769000 13769033 chr3L 13769085 13769119 7 86 0.0 1.0 0.5 4.7 119 chr3L 13769000 intron bru-3 - chr3L 13769060 intron bru-3 - chr3L 13769119 intron bru-3 - chr3L_7_13765001 chr3L_13765001 RAL-365 817 chr3L 13823864 13823889 chr3L 13824033 13824058 8 169 0.0 1.5 0.8 4.4 194 chr3L 13823864 intergenic not near genes chr3L 13823961 intergenic not near genes chr3L 13824058 intergenic not near genes chr3L_8_13820001 chr3L_13820001 RAL-365 818 chr3L 13828689 13828721 chr3L 13828764 13828797 6 76 0.0 0.5 0.2 5.0 108 chr3L 13828689 intergenic not near genes chr3L 13828743 intergenic not near genes chr3L 13828797 intergenic not near genes chr3L_6_13825001 chr3L_13825001 RAL-365 819 chr3L 14076290 14076318 chr3L 14076368 14076396 9 78 0.0 2.0 1.0 4.5 106 chr3L 14076290 intron btl + chr3L 14076343 intron btl + chr3L 14076396 intron btl + chr3L_9_14075001 chr3L_14075001 RAL-365 820 chr3L 14119012 14119042 chr3L 14119108 14119138 10 95 2.0 1.0 1.5 4.0 126 chr3L 14119012 intron Sox21b - chr3L 14119075 intron Sox21b - chr3L 14119138 intron Sox21b - chr3L_10_14115001 chr3L_14115001 RAL-365 821 chr3L 14214859 14214869 chr3L 14214944 14214954 4 85 0.0 1.0 0.5 2.7 95 chr3L 14214859 intron nuf + chr3L 14214906 intron nuf + chr3L 14214954 intron nuf + chr3L_4_14210001 chr3L_14210001 RAL-365 822 chr3L 14245576 14245594 chr3L 14245670 14245688 1360 7 94 4.0 2.0 3.0 1.8 112 chr3L 14245576 3` UTR CR44561 - chr3L 14245632 3` UTR CR44561 - chr3L 14245688 3` UTR CR44561 - chr3L_7_14245001 chr3L_14245001 RAL-365 823 chr3L 14295989 14296012 chr3L 14296475 14296498 roo 5 486 1.5 2.0 1.8 1.8 509 chr3L 14295989 intron fz + chr3L 14296244 intron fz + chr3L 14296498 intron fz + chr3L_5_14295001 chr3L_14295001 RAL-365 824 chr3L 14312022 14312052 chr3L 14316834 14316866 X-element 6 4814 1.5 1.0 1.2 2.7 4844 chr3L 14312022 exon fz + chr3L 14314444 intron fz + chr3L 14316866 intron fz + chr3L_6_14310001 chr3L_14310001 RAL-365 825 chr3L 14392222 14392229 chr3L 14392306 14392313 5 84 0.0 0.0 0.0 5.0 91 chr3L 14392222 intergenic not near genes chr3L 14392268 intergenic not near genes chr3L 14392313 intergenic not near genes chr3L_5_14390001 chr3L_14390001 RAL-365 826 chr3L 14437881 14437909 chr3L 14437975 14438003 7 94 1.5 1.0 1.2 3.2 122 chr3L 14437881 intron bbg - chr3L 14437942 intron bbg - chr3L 14438003 intron bbg - chr3L_7_14435001 chr3L_14435001 RAL-365 827 chr3L 14468451 14468474 chr3L 14473657 14473680 copia 6 5206 2.0 2.5 2.2 1.9 5229 chr3L 14468451 intron bbg - chr3L 14471066 intron bbg - chr3L 14473680 intron bbg - chr3L_6_14470001 chr3L_14470001 RAL-365 828 chr3L 14486015 14486046 chr3L 14486096 14486127 6 81 1.5 1.5 1.5 2.4 112 chr3L 14486015 intron bbg - chr3L 14486071 intron bbg - chr3L 14486127 intron bbg - chr3L_6_14485001 chr3L_14485001 RAL-365 829 chr3L 14522103 14522128 chr3L 14522202 14522227 7 99 1.0 0.5 0.8 3.9 124 chr3L 14522103 intron bbg - chr3L 14522165 intron bbg - chr3L 14522227 intron bbg - chr3L_7_14520001 chr3L_14520001 RAL-365 830 chr3L 14555914 14555937 chr3L 14555996 14556019 4 82 0.5 1.0 0.8 2.2 105 chr3L 14555914 intergenic not near genes chr3L 14555966 intergenic not near genes chr3L 14556019 intergenic not near genes chr3L_4_14555001 chr3L_14555001 RAL-365 831 chr3L 14617204 14617213 chr3L 14617304 14617313 5 100 2.0 3.0 2.5 1.4 109 chr3L 14617204 intron shd + chr3L 14617258 intron shd + chr3L 14617313 intron shd + chr3L_5_14615001 chr3L_14615001 RAL-365 832 chr3L 14633788 14633813 chr3L 14633884 14633909 7 96 1.0 1.0 1.0 3.5 121 chr3L 14633788 intron dlp + chr3L 14633848 intron dlp + chr3L 14633909 intron dlp + chr3L_7_14630001 chr3L_14630001 RAL-365 833 chr3L 14721190 14721209 chr3L 14723033 14723052 Rt1c 6 1843 2.0 2.0 2.0 2.0 1862 chr3L 14721190 intron ome + chr3L 14722121 intron ome + chr3L 14723052 intron ome + chr3L_6_14720001 chr3L_14720001 RAL-365 834 chr3L 14741141 14741167 chr3L 14741219 14741245 7 78 2.0 1.0 1.5 2.8 104 chr3L 14741141 intron ome + chr3L 14741193 intron ome + chr3L 14741245 intron ome + chr3L_7_14740001 chr3L_14740001 RAL-365 835 chr3L 14857295 14857329 chr3L 14857407 14857442 12 113 0.5 2.0 1.2 5.5 147 chr3L 14857295 intron CG17839 + chr3L 14857368 intron CG17839 + chr3L 14857442 intron CG17839 + chr3L_12_14855001 chr3L_14855001 RAL-365 836 chr3L 14861811 14861833 chr3L 14861889 14861913 6 80 1.0 2.0 1.5 2.4 102 chr3L 14861811 intron CG17839 + chr3L 14861862 intron CG17839 + chr3L 14861913 intron CG17839 + chr3L_6_14860001 chr3L_14860001 RAL-365 837 chr3L 15053419 15053445 chr3L 15053758 15053784 7 339 1.0 1.5 1.2 3.2 365 chr3L 15053419 intron Sytbeta - chr3L 15053602 intron,3` UTR Sytbeta -,CG18649 - chr3L 15053784 intron,3` UTR Sytbeta -,CG18649 - chr3L_7_15050001 chr3L_15050001 RAL-365 838 chr3L 15085062 15085076 chr3L 15086228 15086242 1360 4 1166 1.5 1.5 1.5 1.6 1180 chr3L 15085062 intron cp309 - chr3L 15085652 intron cp309 - chr3L 15086242 intron cp309 - chr3L_4_15085001 chr3L_15085001 RAL-365 839 chr3L 15233551 15233584 chr3L 15233632 15233665 5 81 1.0 0.5 0.8 2.8 114 chr3L 15233551 intergenic not near genes chr3L 15233608 intergenic not near genes chr3L 15233665 intergenic not near genes chr3L_5_15230001 chr3L_15230001 RAL-365 840 chr3L 15295775 15295789 chr3L 15298618 15298632 gypsy5 4 2843 2.5 1.5 2.0 1.3 2857 chr3L 15295775 intergenic not near genes chr3L 15297204 intergenic not near genes chr3L 15298632 intergenic Best4 + chr3L_4_15295001 chr3L_15295001 RAL-365 841 chr3L 15384956 15384981 chr3L 15385084 15385109 10 127 2.5 0.5 1.5 4.0 153 chr3L 15384956 intergenic not near genes chr3L 15385032 intergenic not near genes chr3L 15385109 intergenic not near genes chr3L_10_15385001 chr3L_15385001 RAL-365 842 chr3L 15444655 15444684 chr3L 15444749 15444778 8 94 1.5 3.0 2.2 2.5 123 chr3L 15444655 intergenic not near genes chr3L 15444716 intergenic not near genes chr3L 15444778 intergenic not near genes chr3L_8_15440001 chr3L_15440001 RAL-365 843 chr3L 15466051 15466136 chr3L 15466133 15466232 6 93 0.0 0.0 0.0 6.0 181 chr3L 15466051 intergenic not near genes chr3L 15466142 intergenic not near genes chr3L 15466232 intergenic not near genes chr3L_6_15465001 chr3L_15465001 RAL-365 844 chr3L 15489068 15489081 chr3L 15489348 15489361 5 280 4.5 2.0 3.2 1.2 293 chr3L 15489068 intergenic not near genes chr3L 15489214 intergenic not near genes chr3L 15489361 intergenic not near genes chr3L_5_15485001 chr3L_15485001 RAL-365 845 chr3L 15541615 15541648 chr3L 15541706 15541739 4 91 1.5 1.0 1.2 1.8 124 chr3L 15541615 intron CrebA + chr3L 15541677 intron CrebA + chr3L 15541739 intron CrebA + chr3L_4_15540001 chr3L_15540001 RAL-365 846 chr3L 15554927 15554947 chr3L 15556714 15556734 S-element 4 1787 2.0 3.0 2.5 1.1 1807 chr3L 15554927 intron AGO2 + chr3L 15555830 intron AGO2 + chr3L 15556734 intron AGO2 + chr3L_4_15555001 chr3L_15555001 RAL-365 847 chr3L 15694174 15694198 chr3L 15694259 15694283 5 85 3.5 1.5 2.5 1.4 109 chr3L 15694174 intergenic not near genes chr3L 15694228 intergenic not near genes chr3L 15694283 intergenic not near genes chr3L_5_15690001 chr3L_15690001 RAL-365 848 chr3L 15728259 15728288 chr3L 15728336 15728365 5 77 0.5 1.0 0.8 2.8 106 chr3L 15728259 5` UTR comm - chr3L 15728312 5` UTR comm - chr3L 15728365 5` UTR comm - chr3L_5_15725001 chr3L_15725001 RAL-365 849 chr3L 15742960 15742984 chr3L 15743121 15743144 5 161 2.5 0.0 1.2 2.3 184 chr3L 15742960 intergenic not near genes chr3L 15743052 intergenic not near genes chr3L 15743144 intergenic not near genes chr3L_5_15740001 chr3L_15740001 RAL-365 850 chr3L 15773506 15773519 chr3L 15773735 15773748 5 229 3.0 0.5 1.8 1.8 242 chr3L 15773506 intergenic not near genes chr3L 15773627 intergenic not near genes chr3L 15773748 intergenic not near genes chr3L_5_15770001 chr3L_15770001 RAL-365 851 chr3L 15899227 15899262 chr3L 15899794 15899829 jockey 9 566 2.5 3.5 3.0 2.2 602 chr3L 15899227 intergenic pHCl - chr3L 15899528 intergenic pHCl - chr3L 15899829 intergenic sff - chr3L_9_15895001 chr3L_15895001 RAL-365 852 chr3L 15946499 15946515 chr3L 15946585 15946601 6 86 4.5 0.0 2.2 1.9 102 chr3L 15946499 intron Pka-C3 - chr3L 15946550 intron Pka-C3 - chr3L 15946601 intron Pka-C3 - chr3L_6_15945001 chr3L_15945001 RAL-365 853 chr3L 16184107 16184138 chr3L 16188926 16188954 X-element 11 4818 1.5 1.5 1.5 4.4 4847 chr3L 16184107 intergenic not near genes chr3L 16186530 intergenic not near genes chr3L 16188954 intergenic not near genes chr3L_11_16185001 chr3L_16185001 RAL-365 854 chr3L 16220505 16220517 chr3L 16220590 16220602 5 85 3.5 1.0 2.2 1.6 97 chr3L 16220505 intergenic not near genes chr3L 16220554 intergenic not near genes chr3L 16220602 intergenic not near genes chr3L_5_16220001 chr3L_16220001 RAL-365 855 chr3L 16236349 16236370 chr3L 16236464 16236485 7 115 2.0 3.0 2.5 2.0 136 chr3L 16236349 3` UTR l(3)72Dp + chr3L 16236417 3` UTR l(3)72Dp + chr3L 16236485 3` UTR l(3)72Dp + chr3L_7_16235001 chr3L_16235001 RAL-365 856 chr3L 16286448 16286473 chr3L 16286808 16286833 6 360 1.5 2.5 2.0 2.0 385 chr3L 16286448 intergenic not near genes chr3L 16286640 intergenic not near genes chr3L 16286833 intergenic not near genes chr3L_6_16285001 chr3L_16285001 RAL-365 857 chr3L 16358654 16358669 chr3L 16358734 16358749 5 79 1.5 1.0 1.2 2.3 95 chr3L 16358654 intron CG45057 - chr3L 16358702 intron CG45057 - chr3L 16358749 intron CG45057 - chr3L_5_16355001 chr3L_16355001 RAL-365 858 chr3L 16443850 16443879 chr3L 16446190 16446216 Doc 5 2339 1.5 3.0 2.2 1.6 2366 chr3L 16443850 intron,intron CG33158 +,dsx-c73A - chr3L 16445033 intron,intron CG33158 +,dsx-c73A - chr3L 16446216 intron,intron CG33158 +,dsx-c73A - chr3L_5_16445001 chr3L_16445001 RAL-365 859 chr3L 16493992 16494008 chr3L 16494509 16494525 jockey 7 516 3.5 5.5 4.5 1.3 533 chr3L 16493992 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494258 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494525 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_7_16490001 chr3L_16490001 RAL-365 860 chr3L 16503625 16503653 chr3L 16503702 16503729 4 75 2.0 0.5 1.2 1.8 104 chr3L 16503625 intron CG43373 - chr3L 16503677 intron CG43373 - chr3L 16503729 intron CG43373 - chr3L_4_16500001 chr3L_16500001 RAL-365 861 chr3L 16536812 16536817 chr3L 16537200 16537207 4 390 1.5 1.5 1.5 1.6 395 chr3L 16536812 intron CG43373 - chr3L 16537010 intron CG43373 - chr3L 16537207 intron CG43373 - chr3L_4_16535001 chr3L_16535001 RAL-365 862 chr3L 16540072 16540084 chr3L 16540160 16540172 8 88 1.5 3.0 2.2 2.5 100 chr3L 16540072 intron CG43373 - chr3L 16540122 intron CG43373 - chr3L 16540172 intron CG43373 - chr3L_8_16540001 chr3L_16540001 RAL-365 863 chr3L 16571575 16571598 chr3L 16571656 16571679 6 81 2.0 1.0 1.5 2.4 104 chr3L 16571575 intron Mipp1 - chr3L 16571627 intron Mipp1 - chr3L 16571679 intron Mipp1 - chr3L_6_16570001 chr3L_16570001 RAL-365 864 chr3L 16616509 16616538 chr3L 16621837 16621865 297 11 5328 2.0 2.0 2.0 3.7 5356 chr3L 16616509 3` UTR Abl - chr3L 16619187 3` UTR Abl - chr3L 16621865 3` UTR Abl - chr3L_11_16615001 chr3L_16615001 RAL-365 865 chr3L 16757645 16757661 chr3L 16757735 16757748 4 89 1.0 1.0 1.0 2.0 103 chr3L 16757645 intergenic not near genes chr3L 16757696 intergenic not near genes chr3L 16757748 intergenic not near genes chr3L_4_16755001 chr3L_16755001 RAL-365 866 chr3L 16808043 16808068 chr3L 16808119 16808144 5 75 2.5 0.0 1.2 2.3 101 chr3L 16808043 intron nudC + chr3L 16808094 intron nudC + chr3L 16808144 intron nudC + chr3L_5_16805001 chr3L_16805001 RAL-365 867 chr3L 16861028 16861053 chr3L 16861130 16861155 7 102 0.5 3.0 1.8 2.5 127 chr3L 16861028 intron,exon Rh4 -,CG13029 + chr3L 16861092 intron,intron Rh4 -,CG13029 + chr3L 16861155 intron,exon Rh4 -,CG13029 + chr3L_7_16860001 chr3L_16860001 RAL-365 868 chr3L 16869577 16869608 chr3L 16869659 16869691 6 83 0.5 3.0 1.8 2.1 114 chr3L 16869577 intron Lmpt + chr3L 16869634 intron Lmpt + chr3L 16869691 intron Lmpt + chr3L_6_16865001 chr3L_16865001 RAL-365 869 chr3L 16945725 16945759 chr3L 16954878 16954912 roo 11 9152 4.5 2.0 3.2 2.6 9187 chr3L 16945725 exon Obp73a + chr3L 16950318 intergenic not near genes chr3L 16954912 5` UTR Nc73EF + chr3L_11_16950001 chr3L_16950001 RAL-365 870 chr3L 17026788 17026812 chr3L 17026869 17026893 4 81 3.0 1.5 2.2 1.2 105 chr3L 17026788 exon Fit2 + chr3L 17026840 3` UTR Fit2 + chr3L 17026893 3` UTR Fit2 + chr3L_4_17025001 chr3L_17025001 RAL-365 871 chr3L 17034934 17034969 chr3L 17035122 17035157 G2 4 188 1.5 0.0 0.8 2.2 223 chr3L 17034934 intergenic not near genes chr3L 17035046 intergenic not near genes chr3L 17035157 intergenic not near genes chr3L_4_17035001 chr3L_17035001 RAL-365 872 chr3L 17085010 17085033 chr3L 17094159 17094182 roo 5 9149 3.0 3.5 3.2 1.2 9172 chr3L 17085010 intron Rbp6 - chr3L 17089596 intron Rbp6 - chr3L 17094182 intron Rbp6 - chr3L_5_17085001 chr3L_17085001 RAL-365 873 chr3L 17120658 17120683 chr3L 17120733 17120759 8 76 1.5 2.5 2.0 2.7 101 chr3L 17120658 intron Rbp6 - chr3L 17120708 intron Rbp6 - chr3L 17120759 intron Rbp6 - chr3L_8_17120001 chr3L_17120001 RAL-365 874 chr3L 17142732 17142757 chr3L 17142959 17142985 7 228 1.0 1.5 1.2 3.2 253 chr3L 17142732 intron Rbp6 - chr3L 17142858 intron Rbp6 - chr3L 17142985 intron Rbp6 - chr3L_7_17140001 chr3L_17140001 RAL-365 875 chr3L 17146953 17146986 chr3L 17147035 17147067 8 82 2.0 1.0 1.5 3.2 114 chr3L 17146953 intron Rbp6 - chr3L 17147010 intron Rbp6 - chr3L 17147067 intron Rbp6 - chr3L_8_17145001 chr3L_17145001 RAL-365 876 chr3L 17376328 17376355 chr3L 17377270 17377297 8 942 23.0 14.0 18.5 0.4 969 chr3L 17376328 intron Cad74A - chr3L 17376812 intron Cad74A - chr3L 17377297 intron Cad74A - chr3L_8_17375001 chr3L_17375001 RAL-365 877 chr3L 17510732 17510764 chr3L 17510816 17510848 6 84 1.5 3.5 2.5 1.7 116 chr3L 17510732 exon Oatp74D + chr3L 17510790 intron Oatp74D + chr3L 17510848 intron Oatp74D + chr3L_6_17510001 chr3L_17510001 RAL-365 878 chr3L 17585333 17585339 chr3L 17585658 17585664 4 326 3.5 11.5 7.5 0.5 331 chr3L 17585333 intron Eip74EF - chr3L 17585498 intron Eip74EF - chr3L 17585664 intron Eip74EF - chr3L_4_17585001 chr3L_17585001 RAL-365 879 chr3L 17730853 17730882 chr3L 17738183 17738210 mdg1 5 7329 0.5 1.5 1.0 2.5 7357 chr3L 17730853 intron Ccn + chr3L 17734532 intron Ccn + chr3L 17738210 intron Ccn + chr3L_5_17730001 chr3L_17730001 RAL-365 880 chr3L 17789844 17789876 chr3L 17789920 17789952 6 76 0.5 1.5 1.0 3.0 108 chr3L 17789844 intergenic not near genes chr3L 17789898 intergenic not near genes chr3L 17789952 intergenic not near genes chr3L_6_17785001 chr3L_17785001 RAL-365 881 chr3L 17799813 17799837 chr3L 17801600 17801624 S-element 5 1787 1.0 1.0 1.0 2.5 1811 chr3L 17799813 intron NUCB1 - chr3L 17800718 intron NUCB1 - chr3L 17801624 intron NUCB1 - chr3L_5_17800001 chr3L_17800001 RAL-365 882 chr3L 17837626 17837653 chr3L 17837714 17837741 7 88 1.0 1.5 1.2 3.2 115 chr3L 17837626 exon Grd + chr3L 17837684 intron Grd + chr3L 17837741 intron Grd + chr3L_7_17835001 chr3L_17835001 RAL-365 883 chr3L 17896624 17896639 chr3L 17896703 17896718 4 79 0.0 1.5 0.8 2.2 94 chr3L 17896624 intergenic not near genes chr3L 17896671 intergenic not near genes chr3L 17896718 intergenic not near genes chr3L_4_17895001 chr3L_17895001 RAL-365 884 chr3L 17918374 17918403 chr3L 17921177 17921206 opus 9 2803 1.0 1.0 1.0 4.5 2832 chr3L 17918374 intergenic not near genes chr3L 17919790 intergenic not near genes chr3L 17921206 intergenic not near genes chr3L_9_17915001 chr3L_17915001 RAL-365 885 chr3L 17991569 17991587 chr3L 17991647 17991665 4 78 1.0 3.0 2.0 1.3 96 chr3L 17991569 intron Eip75B - chr3L 17991617 intron Eip75B - chr3L 17991665 intron Eip75B - chr3L_4_17990001 chr3L_17990001 RAL-365 886 chr3L 18000676 18000706 chr3L 18000753 18000783 12 77 1.0 3.0 2.0 4.0 107 chr3L 18000676 intron Eip75B - chr3L 18000730 intron Eip75B - chr3L 18000783 intron Eip75B - chr3L_12_18000001 chr3L_18000001 RAL-365 887 chr3L 18029960 18029974 chr3L 18030037 18030051 4 77 1.0 0.0 0.5 2.7 91 chr3L 18029960 intron Eip75B - chr3L 18030006 intron Eip75B - chr3L 18030051 intron Eip75B - chr3L_4_18030001 chr3L_18030001 RAL-365 888 chr3L 18047714 18047739 chr3L 18056770 18056795 roo 4 9056 0.5 1.0 0.8 2.2 9081 chr3L 18047714 intron Eip75B - chr3L 18052254 intron Eip75B - chr3L 18056795 intron Eip75B - chr3L_4_18050001 chr3L_18050001 RAL-365 889 chr3L 18133026 18133040 chr3L 18133116 18133130 5 90 0.5 0.0 0.2 4.2 104 chr3L 18133026 intergenic Cyp312a1 - chr3L 18133078 intergenic Cyp312a1 - chr3L 18133130 intergenic Cyp312a1 - chr3L_5_18130001 chr3L_18130001 RAL-365 890 chr3L 18150318 18150342 chr3L 18150415 18150438 4 97 1.5 1.5 1.5 1.6 120 chr3L 18150318 intron CG7330 + chr3L 18150378 intron CG7330 + chr3L 18150438 intron CG7330 + chr3L_4_18150001 chr3L_18150001 RAL-365 891 chr3L 18248963 18248986 chr3L 18249061 18249084 5 98 0.0 1.5 0.8 2.8 121 chr3L 18248963 intergenic not near genes chr3L 18249024 intergenic not near genes chr3L 18249084 intergenic not near genes chr3L_5_18245001 chr3L_18245001 RAL-365 892 chr3L 18359603 18359628 chr3L 18359695 18359720 5 92 2.0 1.5 1.8 1.8 117 chr3L 18359603 intergenic not near genes chr3L 18359662 intergenic not near genes chr3L 18359720 intergenic not near genes chr3L_5_18355001 chr3L_18355001 RAL-365 893 chr3L 18376089 18376113 chr3L 18376178 18376202 4 89 1.5 0.0 0.8 2.2 113 chr3L 18376089 intergenic not near genes chr3L 18376146 intergenic not near genes chr3L 18376202 intergenic not near genes chr3L_4_18375001 chr3L_18375001 RAL-365 894 chr3L 18436075 18436091 chr3L 18436173 18436188 6 98 1.5 2.0 1.8 2.1 113 chr3L 18436075 intergenic not near genes chr3L 18436132 intergenic not near genes chr3L 18436188 intergenic not near genes chr3L_6_18435001 chr3L_18435001 RAL-365 895 chr3L 18456273 18456298 chr3L 18456361 18456386 5 87 1.5 0.5 1.0 2.5 113 chr3L 18456273 intergenic CR44670 - chr3L 18456330 intergenic CR44670 - chr3L 18456386 intergenic CR44670 - chr3L_5_18455001 chr3L_18455001 RAL-365 896 chr3L 18506141 18506155 chr3L 18509604 18509617 F-element 6 3463 0.0 3.0 1.5 2.4 3476 chr3L 18506141 intergenic not near genes chr3L 18507879 intergenic not near genes chr3L 18509617 intergenic not near genes chr3L_6_18505001 chr3L_18505001 RAL-365 897 chr3L 18582220 18582248 chr3L 18582305 18582333 9 85 1.0 1.0 1.0 4.5 113 chr3L 18582220 intergenic not near genes chr3L 18582276 intergenic not near genes chr3L 18582333 intergenic not near genes chr3L_9_18580001 chr3L_18580001 RAL-365 898 chr3L 18638576 18638591 chr3L 18638670 18638685 8 94 1.5 2.5 2.0 2.7 109 chr3L 18638576 intron MYPT-75D + chr3L 18638630 intron MYPT-75D + chr3L 18638685 intron MYPT-75D + chr3L_8_18635001 chr3L_18635001 RAL-365 899 chr3L 18649405 18649430 chr3L 18649491 18649516 4 86 3.5 2.0 2.8 1.1 111 chr3L 18649405 intron MYPT-75D + chr3L 18649460 intron MYPT-75D + chr3L 18649516 intron MYPT-75D + chr3L_4_18645001 chr3L_18645001 RAL-365 900 chr3L 18772407 18772417 chr3L 18781088 18781098 roo 4 8681 3.0 2.0 2.5 1.1 8691 chr3L 18772407 intron ftz-f1 - chr3L 18776752 intron ftz-f1 - chr3L 18781098 intron ftz-f1 - chr3L_4_18775001 chr3L_18775001 RAL-365 901 chr3L 18843875 18843884 chr3L 18843973 18843982 8 98 2.0 1.0 1.5 3.2 107 chr3L 18843875 intron Indy - chr3L 18843928 intron Indy - chr3L 18843982 intron Indy - chr3L_8_18840001 chr3L_18840001 RAL-365 902 chr3L 18929957 18929990 chr3L 18930041 18930074 4 84 1.5 1.0 1.2 1.8 117 chr3L 18929957 intron CG32204 - chr3L 18930016 intron CG32204 - chr3L 18930074 exon CG32204 - chr3L_4_18930001 chr3L_18930001 RAL-365 903 chr3L 18933092 18933128 chr3L 18933177 18933213 5 85 1.0 0.5 0.8 2.8 121 chr3L 18933092 intron CG32204 - chr3L 18933152 intron CG32204 - chr3L 18933213 intron CG32204 - chr3L_5_18930001 chr3L_18930001 RAL-365 904 chr3L 18958607 18958624 chr3L 18958683 18958700 6 76 1.0 2.0 1.5 2.4 93 chr3L 18958607 intergenic not near genes chr3L 18958654 intergenic not near genes chr3L 18958700 intergenic not near genes chr3L_6_18955001 chr3L_18955001 RAL-365 905 chr3L 19008857 19008872 chr3L 19009193 19009210 jockey 4 338 0.5 7.5 4.0 0.8 353 chr3L 19008857 intron nkd - chr3L 19009034 intron nkd - chr3L 19009210 intron nkd - chr3L_4_19005001 chr3L_19005001 RAL-365 906 chr3L 19029452 19029480 chr3L 19029554 19029582 8 102 1.0 3.5 2.2 2.5 130 chr3L 19029452 intron nkd - chr3L 19029517 intron nkd - chr3L 19029582 intron nkd - chr3L_8_19025001 chr3L_19025001 RAL-365 907 chr3L 19082036 19082061 chr3L 19082138 19082163 6 102 2.0 0.5 1.2 2.7 127 chr3L 19082036 intron Mkp3 - chr3L 19082100 intron Mkp3 - chr3L 19082163 intron Mkp3 - chr3L_6_19080001 chr3L_19080001 RAL-365 908 chr3L 19101713 19101742 chr3L 19102085 19102114 4 372 0.5 0.5 0.5 2.7 401 chr3L 19101713 intergenic not near genes chr3L 19101914 intergenic not near genes chr3L 19102114 intergenic not near genes chr3L_4_19100001 chr3L_19100001 RAL-365 909 chr3L 19117041 19117073 chr3L 19124488 19124520 mdg1 5 7446 1.0 3.0 2.0 1.7 7479 chr3L 19117041 intron CG14082 - chr3L 19120780 intron CG14082 - chr3L 19124520 intron CG14082 - chr3L_5_19120001 chr3L_19120001 RAL-365 910 chr3L 19138561 19138588 chr3L 19138641 19138668 7 81 3.0 3.0 3.0 1.8 107 chr3L 19138561 intron CG14082 - chr3L 19138614 intron CG14082 - chr3L 19138668 intron CG14082 - chr3L_7_19135001 chr3L_19135001 RAL-365 911 chr3L 19173717 19173743 chr3L 19173868 19173893 5 151 2.5 1.0 1.8 1.8 176 chr3L 19173717 intron fz2 - chr3L 19173805 intron fz2 - chr3L 19173893 intron fz2 - chr3L_5_19170001 chr3L_19170001 RAL-365 912 chr3L 19208072 19208090 chr3L 19209446 19209462 Doc 5 1373 0.0 0.0 0.0 5.0 1390 chr3L 19208072 intron fz2 - chr3L 19208767 intron fz2 - chr3L 19209462 intron fz2 - chr3L_5_19205001 chr3L_19205001 RAL-365 913 chr3L 19220633 19220634 chr3L 22908066 22908066 4 3687433 8.0 8.0 8.0 0.4 3687433 chr3L 19220633 intron fz2 - chr3L 21064350 intron siz + chr3L 22908066 intergenic not near genes chr3L_4_21060001 chr3L_21060001 RAL-365 914 chr3L 19220637 19220637 chr3L 22908066 22908066 4 3687429 8.0 8.0 8.0 0.4 3687429 chr3L 19220637 intron fz2 - chr3L 21064352 intron siz + chr3L 22908066 intergenic not near genes chr3L_4_21060001 chr3L_21060001 RAL-365 915 chr3L 19238729 19238746 chr3L 19238836 19238853 4 107 1.0 2.0 1.5 1.6 124 chr3L 19238729 intergenic not near genes chr3L 19238791 intergenic not near genes chr3L 19238853 intergenic not near genes chr3L_4_19235001 chr3L_19235001 RAL-365 916 chr3L 19244113 19244135 chr3L 19244191 19244213 10 78 2.5 1.0 1.8 3.6 100 chr3L 19244113 intergenic not near genes chr3L 19244163 intergenic not near genes chr3L 19244213 intergenic not near genes chr3L_10_19240001 chr3L_19240001 RAL-365 917 chr3L 19262212 19262240 chr3L 19262294 19262322 8 82 0.0 3.0 1.5 3.2 110 chr3L 19262212 3` UTR Bet1 + chr3L 19262267 3` UTR,3` UTR Bet1 +,Max - chr3L 19262322 3` UTR,3` UTR Bet1 +,Max - chr3L_8_19260001 chr3L_19260001 RAL-365 918 chr3L 19279678 19279705 chr3L 19279769 19279795 8 91 1.5 0.0 0.8 4.4 117 chr3L 19279678 intron CG14086 + chr3L 19279736 exon CG14086 + chr3L 19279795 exon CG14086 + chr3L_8_19275001 chr3L_19275001 RAL-365 919 chr3L 19365919 19365929 chr3L 19366016 19366026 4 97 0.0 4.5 2.2 1.2 107 chr3L 19365919 intron CG32206 - chr3L 19365972 intron CG32206 - chr3L 19366026 intron CG32206 - chr3L_4_19365001 chr3L_19365001 RAL-365 920 chr3L 19417802 19417833 chr3L 19417882 19417913 5 80 0.0 1.0 0.5 3.3 111 chr3L 19417802 intergenic not near genes chr3L 19417858 intergenic not near genes chr3L 19417913 intergenic not near genes chr3L_5_19415001 chr3L_19415001 RAL-365 921 chr3L 19426746 19426779 chr3L 19426824 19426857 11 77 2.5 5.0 3.8 2.3 111 chr3L 19426746 intergenic not near genes chr3L 19426802 intergenic not near genes chr3L 19426857 intergenic not near genes chr3L_11_19425001 chr3L_19425001 RAL-365 922 chr3L 19430403 19430427 chr3L 19430481 19430505 9 78 2.5 1.0 1.8 3.2 102 chr3L 19430403 intergenic not near genes chr3L 19430454 intergenic not near genes chr3L 19430505 intergenic not near genes chr3L_9_19430001 chr3L_19430001 RAL-365 923 chr3L 19527923 19527956 chr3L 19528002 19528035 6 79 4.0 2.0 3.0 1.5 112 chr3L 19527923 intergenic not near genes chr3L 19527979 intergenic not near genes chr3L 19528035 intergenic not near genes chr3L_6_19525001 chr3L_19525001 RAL-365 924 chr3L 19544244 19544257 chr3L 19544320 19544333 4 76 1.5 0.5 1.0 2.0 89 chr3L 19544244 intergenic CG9279 -,l(3)76BDr - chr3L 19544288 intergenic l(3)76BDr -,CG9279 - chr3L 19544333 intergenic l(3)76BDr -,CG9279 - chr3L_4_19540001 chr3L_19540001 RAL-365 925 chr3L 19820306 19820319 chr3L 19827855 19827868 412 5 7549 1.0 1.0 1.0 2.5 7562 chr3L 19820306 intron Deaf1 + chr3L 19824087 intron Deaf1 + chr3L 19827868 intron Deaf1 + chr3L_5_19820001 chr3L_19820001 RAL-365 926 chr3L 19845734 19845766 chr3L 19845820 19845853 11 87 1.5 2.0 1.8 3.9 119 chr3L 19845734 intron Papss + chr3L 19845794 intron Papss + chr3L 19845853 intron Papss + chr3L_11_19845001 chr3L_19845001 RAL-365 927 chr3L 19848502 19848532 chr3L 19857692 19857721 roo 5 9190 3.0 1.5 2.2 1.6 9219 chr3L 19848502 intron Papss + chr3L 19853112 intron Papss + chr3L 19857721 intron Papss + chr3L_5_19850001 chr3L_19850001 RAL-365 928 chr3L 19962951 19962978 chr3L 19963029 19963056 4 78 1.0 2.0 1.5 1.6 105 chr3L 19962951 intron Ac76E + chr3L 19963004 intron Ac76E + chr3L 19963056 intron Ac76E + chr3L_4_19960001 chr3L_19960001 RAL-365 929 chr3L 20148286 20148316 chr3L 20148376 20148406 9 90 2.5 2.0 2.2 2.8 120 chr3L 20148286 intergenic not near genes chr3L 20148346 intergenic not near genes chr3L 20148406 intergenic not near genes chr3L_9_20145001 chr3L_20145001 RAL-365 930 chr3L 20283678 20283707 chr3L 20283761 20283791 5 84 2.0 2.5 2.2 1.6 113 chr3L 20283678 intron gogo - chr3L 20283734 intron gogo - chr3L 20283791 intron gogo - chr3L_5_20280001 chr3L_20280001 RAL-365 931 chr3L 20345605 20345637 chr3L 20345686 20345716 6 80 2.0 1.0 1.5 2.4 111 chr3L 20345605 intergenic Rbbp5 - chr3L 20345660 intergenic Rbbp5 - chr3L 20345716 intergenic Rbbp5 - chr3L_6_20345001 chr3L_20345001 RAL-365 932 chr3L 20386942 20386961 chr3L 20387044 20387063 4 102 3.0 0.0 1.5 1.6 121 chr3L 20386942 intron fbl + chr3L 20387002 intron fbl + chr3L 20387063 intron fbl + chr3L_4_20385001 chr3L_20385001 RAL-365 933 chr3L 20409543 20409563 chr3L 20410586 20410607 7 1044 14.0 16.0 15.0 0.4 1064 chr3L 20409543 exon CG13248 - chr3L 20410075 intron CG13248 - chr3L 20410607 intergenic CG13248 - chr3L_7_20410001 chr3L_20410001 RAL-365 934 chr3L 20421468 20421486 chr3L 20422226 20422244 6 758 4.0 3.0 3.5 1.3 776 chr3L 20421468 exon zye + chr3L 20421856 exon zye + chr3L 20422244 exon zye + chr3L_6_20420001 chr3L_20420001 RAL-365 935 chr3L 20476752 20476779 chr3L 20484351 20484378 springer 5 7599 1.0 1.0 1.0 2.5 7626 chr3L 20476752 3` UTR isoQC + chr3L 20480565 intergenic not near genes chr3L 20484378 3` UTR ZnT77C - chr3L_5_20480001 chr3L_20480001 RAL-365 936 chr3L 20590064 20590074 chr3L 20590603 20590613 412 4 539 3.5 1.5 2.5 1.1 549 chr3L 20590064 intergenic not near genes chr3L 20590338 intergenic not near genes chr3L 20590613 intergenic not near genes chr3L_4_20590001 chr3L_20590001 RAL-365 937 chr3L 20710758 20710781 chr3L 20710835 20710858 7 77 2.0 0.5 1.2 3.2 100 chr3L 20710758 intergenic not near genes chr3L 20710808 intergenic not near genes chr3L 20710858 intergenic not near genes chr3L_7_20710001 chr3L_20710001 RAL-365 938 chr3L 20826362 20826392 chr3L 20826551 20826579 9 190 1.5 2.5 2.0 3.0 217 chr3L 20826362 intron Pka-R1 + chr3L 20826470 intron Pka-R1 + chr3L 20826579 intron Pka-R1 + chr3L_9_20825001 chr3L_20825001 RAL-365 939 chr3L 20849271 20849301 chr3L 20849350 20849380 5 79 2.5 1.0 1.8 1.8 109 chr3L 20849271 intron CG32432 - chr3L 20849326 intron CG32432 - chr3L 20849380 intron CG32432 - chr3L_5_20845001 chr3L_20845001 RAL-365 940 chr3L 21093782 21093813 chr3L 21093895 21093926 7 113 2.0 3.5 2.8 1.8 144 chr3L 21093782 intron ko - chr3L 21093854 intron ko - chr3L 21093926 intron ko - chr3L_7_21090001 chr3L_21090001 RAL-365 941 chr3L 21130569 21130601 chr3L 21130763 21130795 8 194 2.5 2.0 2.2 2.5 226 chr3L 21130569 intron ko - chr3L 21130682 intron ko - chr3L 21130795 intron ko - chr3L_8_21130001 chr3L_21130001 RAL-365 942 chr3L 21151862 21151885 chr3L 21156946 21156969 flea 5 5084 3.0 1.0 2.0 1.7 5107 chr3L 21151862 intron Ac78C - chr3L 21154416 intron Ac78C - chr3L 21156969 intron Ac78C - chr3L_5_21150001 chr3L_21150001 RAL-365 943 chr3L 21301730 21301758 chr3L 21301816 21301844 14 86 4.5 2.5 3.5 3.1 114 chr3L 21301730 5` UTR CR45432 + chr3L 21301787 5` UTR,3` UTR CR45432 +,CG11309 - chr3L 21301844 5` UTR,3` UTR CR45432 +,CG11309 - chr3L_14_21300001 chr3L_21300001 RAL-365 944 chr3L 21306151 21306178 chr3L 21315310 21315337 roo 8 9159 1.5 1.0 1.2 3.6 9186 chr3L 21306151 3` UTR,3` UTR CG7632 +,Pc - chr3L 21310744 intron Pc - chr3L 21315337 3` UTR Pc - chr3L_8_21310001 chr3L_21310001 RAL-365 945 chr3L 21319528 21319558 chr3L 21319617 21319648 6 88 1.0 2.5 1.8 2.1 120 chr3L 21319528 5` UTR Rab26 + chr3L 21319588 5` UTR Rab26 + chr3L 21319648 5` UTR Rab26 + chr3L_6_21315001 chr3L_21315001 RAL-365 946 chr3L 21415145 21415161 chr3L 21415228 21415244 5 83 2.0 1.5 1.8 1.8 99 chr3L 21415145 intron rgn + chr3L 21415194 intron rgn + chr3L 21415244 intron rgn + chr3L_5_21415001 chr3L_21415001 RAL-365 947 chr3L 21427847 21427881 chr3L 21427940 21427974 7 93 0.5 2.0 1.2 3.2 127 chr3L 21427847 intron,5` UTR barc -,CG33288 + chr3L 21427910 intron,5` UTR barc -,CG33288 + chr3L 21427974 intron,5` UTR barc -,CG33288 + chr3L_7_21425001 chr3L_21425001 RAL-365 948 chr3L 21671056 21671089 chr3L 21671204 21671237 9 148 2.5 1.0 1.8 3.2 181 chr3L 21671056 intergenic not near genes chr3L 21671146 intergenic not near genes chr3L 21671237 intergenic not near genes chr3L_9_21670001 chr3L_21670001 RAL-365 949 chr3L 21736346 21736371 chr3L 21736547 21736569 6 199 0.0 2.0 1.0 3.0 223 chr3L 21736346 intergenic CR43888 + chr3L 21736458 intergenic CR43888 + chr3L 21736569 intergenic CR43888 + chr3L_6_21735001 chr3L_21735001 RAL-365 950 chr3L 21769053 21769083 chr3L 21769140 21769170 5 87 1.5 2.0 1.8 1.8 117 chr3L 21769053 intron,intron Syn1 -,CG42689 + chr3L 21769112 intron,intron Syn1 -,CG42689 + chr3L 21769170 intron,intron Syn1 -,CG42689 + chr3L_5_21765001 chr3L_21765001 RAL-365 951 chr3L 21799939 21799966 chr3L 21800024 21800050 10 85 2.0 2.5 2.2 3.1 111 chr3L 21799939 intergenic not near genes chr3L 21799994 intergenic not near genes chr3L 21800050 intergenic not near genes chr3L_10_21795001 chr3L_21795001 RAL-365 952 chr3L 21828943 21828972 chr3L 21829030 21829059 5 87 2.0 2.5 2.2 1.6 116 chr3L 21828943 intergenic CR43309 -,CG32448 - chr3L 21829001 intergenic CR43309 - chr3L 21829059 intergenic CR43309 - chr3L_5_21825001 chr3L_21825001 RAL-365 953 chr3L 21836733 21836761 chr3L 21836819 21836847 5 86 2.0 0.5 1.2 2.3 114 chr3L 21836733 3` UTR P5CDh1 - chr3L 21836790 3` UTR P5CDh1 - chr3L 21836847 3` UTR P5CDh1 - chr3L_5_21835001 chr3L_21835001 RAL-365 954 chr3L 21871622 21871649 chr3L 21871703 21871727 6 80 2.0 0.0 1.0 3.0 105 chr3L 21871622 intron mub + chr3L 21871674 intron mub + chr3L 21871727 intron mub + chr3L_6_21870001 chr3L_21870001 RAL-365 955 chr3L 21905335 21905364 chr3L 21905414 21905443 9 80 3.0 3.0 3.0 2.2 108 chr3L 21905335 intron mub + chr3L 21905389 intron mub + chr3L 21905443 intron mub + chr3L_9_21905001 chr3L_21905001 RAL-365 956 chr3L 21950333 21950354 chr3L 21950409 21950431 5 76 3.0 4.0 3.5 1.1 98 chr3L 21950333 exon CG7448 + chr3L 21950382 exon CG7448 + chr3L 21950431 intron CG7448 + chr3L_5_21950001 chr3L_21950001 RAL-365 957 chr3L 22008849 22008880 chr3L 22008926 22008957 9 76 1.5 1.5 1.5 3.6 108 chr3L 22008849 intergenic not near genes chr3L 22008903 intergenic not near genes chr3L 22008957 intergenic not near genes chr3L_9_22005001 chr3L_22005001 RAL-365 958 chr3L 22099682 22099708 chr3L 22105868 22105894 3S18 8 6186 1.5 2.5 2.0 2.7 6212 chr3L 22099682 intergenic not near genes chr3L 22102788 intergenic not near genes chr3L 22105894 intergenic not near genes chr3L_8_22100001 chr3L_22100001 RAL-365 959 chr3L 22169459 22169486 chr3L 22169552 22169579 5 92 3.0 2.0 2.5 1.4 120 chr3L 22169459 intron olf413 + chr3L 22169519 intron olf413 + chr3L 22169579 intron olf413 + chr3L_5_22165001 chr3L_22165001 RAL-365 960 chr3L 22196427 22196452 chr3L 22196640 22196665 7 213 4.0 0.5 2.2 2.2 238 chr3L 22196427 intron olf413 + chr3L 22196546 intron olf413 + chr3L 22196665 intron olf413 + chr3L_7_22195001 chr3L_22195001 RAL-365 961 chr3L 22308383 22308410 chr3L 22308469 22308496 9 86 2.5 2.0 2.2 2.8 113 chr3L 22308383 intron Ten-m - chr3L 22308440 intron Ten-m - chr3L 22308496 intron Ten-m - chr3L_9_22305001 chr3L_22305001 RAL-365 962 chr3L 22379937 22379957 chr3L 22380035 22380056 8 99 1.5 2.0 1.8 2.9 119 chr3L 22379937 intron Ten-m - chr3L 22379996 intron Ten-m - chr3L 22380056 intron Ten-m - chr3L_8_22375001 chr3L_22375001 RAL-365 963 chr3L 22413884 22413900 chr3L 22413964 22413984 7 83 4.0 4.0 4.0 1.4 100 chr3L 22413884 intergenic not near genes chr3L 22413934 intergenic not near genes chr3L 22413984 intergenic not near genes chr3L_7_22410001 chr3L_22410001 RAL-365 964 chr3L 22447202 22447209 chr3L 22447293 22447300 4 91 2.5 2.5 2.5 1.1 98 chr3L 22447202 intergenic not near genes chr3L 22447251 intergenic not near genes chr3L 22447300 intergenic not near genes chr3L_4_22445001 chr3L_22445001 RAL-365 965 chr3L 22523538 22523559 chr3L 22523709 22523733 6 173 3.5 1.5 2.5 1.7 195 chr3L 22523538 intergenic not near genes chr3L 22523636 intergenic not near genes chr3L 22523733 intergenic not near genes chr3L_6_22520001 chr3L_22520001 RAL-365 966 chr3L 22555770 22555802 chr3L 22563239 22563272 blood 5 7469 2.0 0.0 1.0 2.5 7502 chr3L 22555770 intergenic not near genes chr3L 22559521 intergenic not near genes chr3L 22563272 intergenic not near genes chr3L_5_22555001 chr3L_22555001 RAL-365 967 chr3L 22577618 22577648 chr3L 22582406 22582435 Doc 13 4788 1.5 3.0 2.2 4.1 4817 chr3L 22577618 intergenic not near genes chr3L 22580026 intergenic not near genes chr3L 22582435 3` UTR CG14459 - chr3L_13_22580001 chr3L_22580001 RAL-365 968 chr3L 22617190 22617223 chr3L 22624642 22624675 blood 5 7452 1.0 0.5 0.8 2.8 7485 chr3L 22617190 intron CG14459 - chr3L 22620932 intron CG14459 - chr3L 22624675 intron CG14459 - chr3L_5_22620001 chr3L_22620001 RAL-365 969 chr3L 22626869 22626901 chr3L 22626957 22626990 10 90 3.0 0.5 1.8 3.6 121 chr3L 22626869 intron CG14459 - chr3L 22626930 intron CG14459 - chr3L 22626990 intron CG14459 - chr3L_10_22625001 chr3L_22625001 RAL-365 970 chr3L 22726251 22726453 chr3L 22726335 22726539 9 86 0.5 2.5 1.5 3.6 288 chr3L 22726251 3` UTR CG14450 - chr3L 22726395 3` UTR CG14450 - chr3L 22726539 3` UTR CG14450 - chr3L_9_22725001 chr3L_22725001 RAL-365 971 chr3L 22761403 22761422 chr3L 22766837 22766853 Ivk 8 5433 1.5 3.0 2.2 2.5 5450 chr3L 22761403 intron SPoCk + chr3L 22764128 intron SPoCk + chr3L 22766853 intron SPoCk + chr3L_8_22760001 chr3L_22760001 RAL-365 972 chr3L 22842643 22842667 chr3L 22842725 22842749 5 82 0.5 2.0 1.2 2.3 106 chr3L 22842643 intergenic not near genes chr3L 22842696 intergenic not near genes chr3L 22842749 intergenic not near genes chr3L_5_22840001 chr3L_22840001 RAL-365 973 chr3L 22885915 22885948 chr3L 22885992 22886025 7 77 1.5 1.5 1.5 2.8 110 chr3L 22885915 intron slif + chr3L 22885970 intron slif + chr3L 22886025 intron slif + chr3L_7_22885001 chr3L_22885001 RAL-365 974 chr3L 22898623 22898653 chr3L 22898770 22898800 11 147 2.0 2.0 2.0 3.7 177 chr3L 22898623 intergenic CR44689 -,CG11131 + chr3L 22898712 intergenic CG11131 +,CR44689 - chr3L 22898800 5` UTR CG11131 + chr3L_11_22895001 chr3L_22895001 RAL-365 975 chr3L 19220633 19220635 chr3L 22908066 22908066 6 3687432 8.0 8.0 8.0 0.7 3687433 chr3L 19220633 intron fz2 - chr3L 21064350 intron siz + chr3L 22908066 intergenic not near genes chr3L_6_21060001 chr3L_21060001 RAL-365 976 chr3L 22974373 22974393 chr3L 22974438 22974471 5 76 4.0 3.0 3.5 1.1 98 chr3L 22974373 intergenic not near genes chr3L 22974422 intergenic not near genes chr3L 22974471 intergenic not near genes chr3L_5_22970001 chr3L_22970001 RAL-365 977 chr3L 22989868 22989884 chr3L 22996842 22996858 297 4 6974 1.0 1.0 1.0 2.0 6990 chr3L 22989868 intergenic not near genes chr3L 22993363 intergenic not near genes chr3L 22996858 intergenic not near genes chr3L_4_22990001 chr3L_22990001 RAL-365 978 chr3L 23031551 23031568 chr3L 23031628 23031645 5 77 3.0 3.0 3.0 1.2 94 chr3L 23031551 exon nrm + chr3L 23031598 exon nrm + chr3L 23031645 exon nrm + chr3L_5_23030001 chr3L_23030001 RAL-365 979 chr3L 23096074 23096107 chr3L 23096157 23096190 7 83 0.5 0.5 0.5 4.7 116 chr3L 23096074 intergenic not near genes chr3L 23096132 intergenic not near genes chr3L 23096190 intergenic not near genes chr3L_7_23095001 chr3L_23095001 RAL-365 980 chr3L 23251941 23251977 chr3L 23252058 23252094 5 117 1.5 0.0 0.8 2.8 153 chr3L 23251941 intron nAChRalpha4 + chr3L 23252018 intron nAChRalpha4 + chr3L 23252094 intron nAChRalpha4 + chr3L_5_23250001 chr3L_23250001 RAL-365 981 chr3L 24012416 24012432 chr3L 24020757 24020773 roo 4 8341 0.5 1.5 1.0 2.0 8357 chr3L 24012416 intergenic not near genes chr3L 24016594 intergenic not near genes chr3L 24020773 intergenic not near genes chr3L_4_24015001 chr3L_24015001 RAL-365 982 chr3L 24021283 24021314 chr3L 24022439 24022471 1360 5 1156 0.0 2.5 1.2 2.3 1188 chr3L 24021283 intergenic not near genes chr3L 24021877 intergenic not near genes chr3L 24022471 intergenic not near genes chr3L_5_24020001 chr3L_24020001 RAL-365 983 chr3L 24036795 24036811 chr3L 24036886 24036902 5 91 1.5 1.5 1.5 2.0 107 chr3L 24036795 intergenic not near genes chr3L 24036848 intergenic not near genes chr3L 24036902 intergenic not near genes chr3L_5_24035001 chr3L_24035001 RAL-365 984 chr3L 24168787 24168822 chr3L 24176115 24176150 ZAM 9 7327 1.0 0.5 0.8 5.0 7363 chr3L 24168787 intron Snap25 + chr3L 24172468 intron Snap25 + chr3L 24176150 intron Snap25 + chr3L_9_24170001 chr3L_24170001 RAL-365 985 chr3L 24289931 24289954 chr3L 24290008 24290031 5 77 3.5 2.0 2.8 1.3 100 chr3L 24289931 intron Snap25 + chr3L 24289981 intron Snap25 + chr3L 24290031 intron Snap25 + chr3L_5_24285001 chr3L_24285001 RAL-365 986 chr3L 25628498 25628507 chr3L 25633269 25633278 F-element 5 4771 2.5 1.0 1.8 1.8 4780 chr3L 25628498 intron CG41343 - chr3L 25630888 intron CG41343 - chr3L 25633278 intron CG41343 - chr3L_5_25630001 chr3L_25630001 RAL-365 987 chr3L 25932754 25932783 chr3L 25932847 25932876 5 93 0.0 1.5 0.8 2.8 122 chr3L 25932754 intron CG40178 - chr3L 25932815 intron CG40178 - chr3L 25932876 intron CG40178 - chr3L_5_25930001 chr3L_25930001 RAL-365 988 chr3L 27167950 27167979 chr3L 27168068 27168095 10 118 1.5 3.0 2.2 3.1 145 chr3L 27167950 intergenic not near genes chr3L 27168022 intergenic not near genes chr3L 27168095 intergenic not near genes chr3L_10_27165001 chr3L_27165001 RAL-365 989 chr3L 27368877 27368908 chr3L 27369422 27369453 9 545 1.0 0.5 0.8 5.0 576 chr3L 27368877 intron Dbp80 + chr3L 27369165 intron Dbp80 + chr3L 27369453 intron Dbp80 + chr3L_9_27365001 chr3L_27365001 RAL-365 990 chr3L 27716246 27716268 chr3L 27716326 27716348 4 80 1.5 1.5 1.5 1.6 102 chr3L 27716246 intergenic not near genes chr3L 27716297 intergenic not near genes chr3L 27716348 intergenic not near genes chr3L_4_27715001 chr3L_27715001 RAL-365 991 chr3L 27972721 27972881 chr3L 27972812 27972959 4 85 6.5 7.0 6.8 0.5 238 chr3L 27972721 exon CG17514 - chr3L 27972840 exon CG17514 - chr3L 27972959 exon CG17514 - chr3L_4_27970001 chr3L_27970001 RAL-365 992 chr3R 1021765 1021793 chr3R 1022019 1022047 5 254 12.5 7.5 10.0 0.5 282 chr3R 1021765 intergenic not near genes chr3R 1021906 intergenic not near genes chr3R 1022047 intergenic not near genes chr3R_5_1020001 chr3R_1020001 RAL-365 993 chr3R 4195480 4195501 chr3R 4195786 4195808 6 307 1.0 2.0 1.5 2.4 328 chr3R 4195480 intergenic not near genes chr3R 4195644 intergenic not near genes chr3R 4195808 intergenic not near genes chr3R_6_4195001 chr3R_4195001 RAL-365 994 chr3R 4366755 4366789 chr3R 4375138 4375172 roo 9 8382 1.5 1.0 1.2 4.1 8417 chr3R 4366755 3` UTR CG1090 + chr3R 4370964 intergenic not near genes chr3R 4375172 5` UTR CR44922 + chr3R_9_4370001 chr3R_4370001 RAL-365 995 chr3R 4408408 4408441 chr3R 4412711 4412745 Juan 4 4304 2.0 2.0 2.0 1.3 4337 chr3R 4408408 intron CG32944 - chr3R 4410576 intron CG32944 - chr3R 4412745 intron CG32944 - chr3R_4_4410001 chr3R_4410001 RAL-365 996 chr3R 4501975 4501997 chr3R 4502053 4502075 5 78 1.0 2.0 1.5 2.0 100 chr3R 4501975 intron CG34357 - chr3R 4502025 intron CG34357 - chr3R 4502075 intron CG34357 - chr3R_5_4500001 chr3R_4500001 RAL-365 997 chr3R 4593478 4593502 chr3R 4593560 4593583 5 81 3.0 3.0 3.0 1.2 105 chr3R 4593478 intergenic not near genes chr3R 4593530 intergenic not near genes chr3R 4593583 intergenic not near genes chr3R_5_4590001 chr3R_4590001 RAL-365 998 chr3R 4609550 4609575 chr3R 4610714 4610739 1360 7 1164 2.5 2.5 2.5 2.0 1189 chr3R 4609550 intergenic not near genes chr3R 4610144 intergenic not near genes chr3R 4610739 intergenic not near genes chr3R_7_4610001 chr3R_4610001 RAL-365 999 chr3R 4753245 4753278 chr3R 4757548 4757581 F-element 7 4302 2.5 4.5 3.5 1.6 4336 chr3R 4753245 intron,intron atms +,CG44098 - chr3R 4755413 intron,intron atms +,CG44098 - chr3R 4757581 intron,exon atms +,CG44098 - chr3R_7_4755001 chr3R_4755001 RAL-365 1000 chr3R 4759721 4759752 chr3R 4761217 4761249 hopper2 8 1497 1.0 3.0 2.0 2.7 1528 chr3R 4759721 intron,intron atms +,CG44098 - chr3R 4760485 intron,intron atms +,CG44098 - chr3R 4761249 intron,intron atms +,CG44098 - chr3R_8_4760001 chr3R_4760001 RAL-365 1001 chr3R 4769162 4769186 chr3R 4769240 4769264 7 78 0.5 1.0 0.8 3.9 102 chr3R 4769162 intron,intron atms +,CG44098 - chr3R 4769213 intron,intron atms +,CG44098 - chr3R 4769264 intron,intron atms +,CG44098 - chr3R_7_4765001 chr3R_4765001 RAL-365 1002 chr3R 4856751 4856783 chr3R 4856837 4856868 6 86 1.0 0.0 0.5 4.0 117 chr3R 4856751 intron opa + chr3R 4856810 intron opa + chr3R 4856868 intron opa + chr3R_6_4855001 chr3R_4855001 RAL-365 1003 chr3R 4861568 4861594 chr3R 4861649 4861675 6 80 2.5 3.0 2.8 1.6 107 chr3R 4861568 intron opa + chr3R 4861622 intron opa + chr3R 4861675 intron opa + chr3R_6_4860001 chr3R_4860001 RAL-365 1004 chr3R 4887482 4887508 chr3R 4894859 4894885 rover 5 7377 3.0 1.0 2.0 1.7 7403 chr3R 4887482 intergenic not near genes chr3R 4891184 intergenic not near genes chr3R 4894885 intergenic not near genes chr3R_5_4890001 chr3R_4890001 RAL-365 1005 chr3R 4896292 4896308 chr3R 4896385 4896401 5 93 1.5 2.0 1.8 1.8 109 chr3R 4896292 intergenic CR45580 + chr3R 4896346 intergenic CR45580 + chr3R 4896401 intergenic CR45580 + chr3R_5_4895001 chr3R_4895001 RAL-365 1006 chr3R 4976188 4976217 chr3R 4976540 4976569 8 352 9.0 14.5 11.8 0.6 381 chr3R 4976188 intergenic not near genes chr3R 4976378 intergenic not near genes chr3R 4976569 intergenic not near genes chr3R_8_4975001 chr3R_4975001 RAL-365 1007 chr3R 5045849 5045871 chr3R 5052951 5052973 HMS-Beagle 4 7102 4.5 1.0 2.8 1.1 7124 chr3R 5045849 intron CR43635 - chr3R 5049411 intergenic not near genes chr3R 5052973 intergenic CR45588 - chr3R_4_5045001 chr3R_5045001 RAL-365 1008 chr3R 5067986 5068007 chr3R 5073503 5073524 mdg3 4 5517 4.0 3.0 3.5 0.9 5538 chr3R 5067986 intergenic not near genes chr3R 5070755 intergenic not near genes chr3R 5073524 intergenic not near genes chr3R_4_5070001 chr3R_5070001 RAL-365 1009 chr3R 5236221 5236244 chr3R 5236348 5236372 4 128 2.5 2.0 2.2 1.2 151 chr3R 5236221 3` UTR,3` UTR Mms19 +,rtp - chr3R 5236296 3` UTR rtp - chr3R 5236372 3` UTR rtp - chr3R_4_5235001 chr3R_5235001 RAL-365 1010 chr3R 5278090 5278114 chr3R 5278171 5278193 6 81 2.5 1.5 2.0 2.0 103 chr3R 5278090 intron mtd - chr3R 5278142 intron mtd - chr3R 5278193 intron mtd - chr3R_6_5275001 chr3R_5275001 RAL-365 1011 chr3R 5338414 5338427 chr3R 5343578 5343604 Rt1c 6 5175 2.5 3.5 3.0 1.5 5190 chr3R 5338414 intron mtd - chr3R 5341009 intron mtd - chr3R 5343604 intron mtd - chr3R_6_5340001 chr3R_5340001 RAL-365 1012 chr3R 5445959 5445987 chr3R 5452419 5452447 Burdock 6 6460 2.5 3.5 3.0 1.5 6488 chr3R 5445959 intron CG14669 + chr3R 5449203 intron CG14669 + chr3R 5452447 intron CG14669 + chr3R_6_5445001 chr3R_5445001 RAL-365 1013 chr3R 5502609 5502619 chr3R 5502688 5502698 6 78 1.0 4.0 2.5 1.7 89 chr3R 5502609 5` UTR CG31547 - chr3R 5502654 5` UTR CG31547 - chr3R 5502698 5` UTR CG31547 - chr3R_6_5500001 chr3R_5500001 RAL-365 1014 chr3R 5626461 5626483 chr3R 5626552 5626573 13 90 4.5 2.5 3.5 2.9 112 chr3R 5626461 intergenic not near genes chr3R 5626517 intergenic not near genes chr3R 5626573 intergenic not near genes chr3R_13_5625001 chr3R_5625001 RAL-365 1015 chr3R 5627016 5627040 chr3R 5627132 5627156 7 116 2.0 2.0 2.0 2.3 140 chr3R 5627016 intergenic not near genes chr3R 5627086 intergenic not near genes chr3R 5627156 intergenic not near genes chr3R_7_5625001 chr3R_5625001 RAL-365 1016 chr3R 5698107 5698138 chr3R 5698202 5698233 15 95 1.5 3.5 2.5 4.3 126 chr3R 5698107 intron plx + chr3R 5698170 intron plx + chr3R 5698233 intron plx + chr3R_15_5695001 chr3R_5695001 RAL-365 1017 chr3R 5746020 5746040 chr3R 5746261 5746281 pogo 8 241 0.5 1.0 0.8 4.4 261 chr3R 5746020 3` UTR Madm + chr3R 5746150 3` UTR Madm + chr3R 5746281 3` UTR Madm + chr3R_8_5745001 chr3R_5745001 RAL-365 1018 chr3R 5822386 5822413 chr3R 5823553 5823580 1360 5 1167 2.0 2.5 2.2 1.6 1194 chr3R 5822386 3` UTR CG2023 - chr3R 5822983 3` UTR CG2023 - chr3R 5823580 3` UTR CG2023 - chr3R_5_5820001 chr3R_5820001 RAL-365 1019 chr3R 5927563 5927590 chr3R 5927803 5927829 pogo 6 239 2.5 3.0 2.8 1.6 266 chr3R 5927563 intron CG34113 - chr3R 5927696 intron CG34113 - chr3R 5927829 intron CG34113 - chr3R_6_5925001 chr3R_5925001 RAL-365 1020 chr3R 5931851 5931873 chr3R 5931926 5931948 5 75 3.5 1.5 2.5 1.4 97 chr3R 5931851 intron CG34113 - chr3R 5931900 intron CG34113 - chr3R 5931948 intron CG34113 - chr3R_5_5930001 chr3R_5930001 RAL-365 1021 chr3R 5954325 5954352 chr3R 5954401 5954428 10 76 2.0 0.0 1.0 5.0 103 chr3R 5954325 intron CG34113 - chr3R 5954376 intron CG34113 - chr3R 5954428 intron CG34113 - chr3R_10_5950001 chr3R_5950001 RAL-365 1022 chr3R 5968178 5968199 chr3R 5968258 5968279 7 80 2.0 2.0 2.0 2.3 101 chr3R 5968178 intergenic not near genes chr3R 5968228 intergenic not near genes chr3R 5968279 intergenic not near genes chr3R_7_5965001 chr3R_5965001 RAL-365 1023 chr3R 5988944 5988973 chr3R 5989026 5989055 8 82 3.5 2.0 2.8 2.1 111 chr3R 5988944 intergenic CR44927 + chr3R 5989000 intergenic CR44927 + chr3R 5989055 intergenic CR44927 + chr3R_8_5985001 chr3R_5985001 RAL-365 1024 chr3R 6009497 6009522 chr3R 6009620 6009645 6 123 1.0 2.5 1.8 2.1 148 chr3R 6009497 intergenic not near genes chr3R 6009571 intergenic not near genes chr3R 6009645 intergenic not near genes chr3R_6_6005001 chr3R_6005001 RAL-365 1025 chr3R 6010130 6010163 chr3R 6010227 6010260 8 97 0.5 1.5 1.0 4.0 130 chr3R 6010130 intergenic CG10280 - chr3R 6010195 intergenic CG10280 - chr3R 6010260 intergenic CG10280 - chr3R_8_6010001 chr3R_6010001 RAL-365 1026 chr3R 6015969 6015992 chr3R 6024450 6024473 Tirant 5 8481 2.0 4.0 3.0 1.2 8504 chr3R 6015969 intergenic not near genes chr3R 6020221 intergenic not near genes chr3R 6024473 intergenic not near genes chr3R_5_6020001 chr3R_6020001 RAL-365 1027 chr3R 6033330 6033347 chr3R 6033412 6033429 11 82 1.5 3.5 2.5 3.1 99 chr3R 6033330 intergenic not near genes chr3R 6033380 intergenic not near genes chr3R 6033429 intergenic not near genes chr3R_11_6030001 chr3R_6030001 RAL-365 1028 chr3R 6035143 6035179 chr3R 6035223 6035259 13 80 2.5 1.0 1.8 4.6 116 chr3R 6035143 intergenic not near genes chr3R 6035201 intergenic not near genes chr3R 6035259 intergenic not near genes chr3R_13_6035001 chr3R_6035001 RAL-365 1029 chr3R 6141921 6141951 chr3R 6141996 6142026 7 76 2.5 3.5 3.0 1.8 105 chr3R 6141921 intergenic not near genes chr3R 6141974 intergenic not near genes chr3R 6142026 intergenic not near genes chr3R_7_6140001 chr3R_6140001 RAL-365 1030 chr3R 6158508 6158537 chr3R 6167091 6167117 Tirant 10 8581 3.0 3.0 3.0 2.5 8609 chr3R 6158508 intergenic not near genes chr3R 6162812 intergenic not near genes chr3R 6167117 intergenic CG1077 + chr3R_10_6160001 chr3R_6160001 RAL-365 1031 chr3R 6175171 6175199 chr3R 6182443 6182471 HMS-Beagle2 8 7272 2.5 2.0 2.2 2.5 7300 chr3R 6175171 intergenic Osi1 + chr3R 6178821 intron CR45194 + chr3R 6182471 intergenic CR45194 + chr3R_8_6175001 chr3R_6175001 RAL-365 1032 chr3R 6316792 6316812 chr3R 6316885 6316899 8 92 2.0 6.0 4.0 1.6 107 chr3R 6316792 intron Osi17 + chr3R 6316846 intron Osi17 + chr3R 6316899 intron Osi17 + chr3R_8_6315001 chr3R_6315001 RAL-365 1033 chr3R 6423411 6423439 chr3R 6423814 6423843 4 403 1.0 1.0 1.0 2.0 432 chr3R 6423411 intron gpp + chr3R 6423627 intron gpp + chr3R 6423843 intron gpp + chr3R_4_6420001 chr3R_6420001 RAL-365 1034 chr3R 6510023 6510049 chr3R 6515104 6515130 jockey 5 5081 1.5 0.5 1.0 2.5 5107 chr3R 6510023 intergenic not near genes chr3R 6512576 intergenic not near genes chr3R 6515130 intergenic not near genes chr3R_5_6510001 chr3R_6510001 RAL-365 1035 chr3R 6526346 6526378 chr3R 6526538 6526570 8 192 0.0 2.0 1.0 4.0 224 chr3R 6526346 intergenic not near genes chr3R 6526458 intergenic not near genes chr3R 6526570 intergenic not near genes chr3R_8_6525001 chr3R_6525001 RAL-365 1036 chr3R 6550326 6550351 chr3R 6550406 6550432 7 81 1.5 1.5 1.5 2.8 106 chr3R 6550326 intron dpr11 - chr3R 6550379 intron dpr11 - chr3R 6550432 intron dpr11 - chr3R_7_6550001 chr3R_6550001 RAL-365 1037 chr3R 6568036 6568064 chr3R 6568116 6568147 5 82 0.0 2.5 1.2 2.3 111 chr3R 6568036 intron dpr11 - chr3R 6568092 intron dpr11 - chr3R 6568147 intron dpr11 - chr3R_5_6565001 chr3R_6565001 RAL-365 1038 chr3R 6571729 6571758 chr3R 6571812 6571844 11 85 0.5 2.5 1.5 4.4 115 chr3R 6571729 intron dpr11 - chr3R 6571786 intron dpr11 - chr3R 6571844 intron dpr11 - chr3R_11_6570001 chr3R_6570001 RAL-365 1039 chr3R 6589899 6589930 chr3R 6589981 6590012 8 82 2.5 1.5 2.0 2.7 113 chr3R 6589899 intron dpr11 - chr3R 6589956 intron dpr11 - chr3R 6590012 intron dpr11 - chr3R_8_6585001 chr3R_6585001 RAL-365 1040 chr3R 6624258 6624278 chr3R 6624340 6624360 7 82 3.5 0.5 2.0 2.3 102 chr3R 6624258 intergenic not near genes chr3R 6624309 intergenic not near genes chr3R 6624360 intergenic not near genes chr3R_7_6620001 chr3R_6620001 RAL-365 1041 chr3R 6643471 6643506 chr3R 6643656 6643691 8 185 16.5 17.0 16.8 0.4 220 chr3R 6643471 intron CG1315 - chr3R 6643581 intron CG1315 - chr3R 6643691 intron CG1315 - chr3R_8_6640001 chr3R_6640001 RAL-365 1042 chr3R 6737506 6737521 chr3R 6739293 6739308 Doc 7 1787 0.5 2.5 1.5 2.8 1802 chr3R 6737506 intron pb - chr3R 6738407 intron pb - chr3R 6739308 intron pb - chr3R_7_6735001 chr3R_6735001 RAL-365 1043 chr3R 6812078 6812108 chr3R 6812163 6812193 5 85 0.5 1.5 1.0 2.5 115 chr3R 6812078 intron CR42651 - chr3R 6812136 intron CR42651 - chr3R 6812193 intron CR42651 - chr3R_5_6810001 chr3R_6810001 RAL-365 1044 chr3R 7103940 7103955 chr3R 7104039 7104054 5 99 2.5 2.0 2.2 1.6 114 chr3R 7103940 intron Alh - chr3R 7103997 intron Alh - chr3R 7104054 intron Alh - chr3R_5_7100001 chr3R_7100001 RAL-365 1045 chr3R 7173679 7173705 chr3R 7173758 7173785 6 80 1.0 1.0 1.0 3.0 106 chr3R 7173679 intron sas + chr3R 7173732 intron sas + chr3R 7173785 intron sas + chr3R_6_7170001 chr3R_7170001 RAL-365 1046 chr3R 7206876 7206903 chr3R 7206965 7206992 11 88 1.5 3.0 2.2 3.4 116 chr3R 7206876 intergenic CG1288 - chr3R 7206934 intergenic CG1288 - chr3R 7206992 intergenic CG1288 - chr3R_11_7205001 chr3R_7205001 RAL-365 1047 chr3R 7385584 7385611 chr3R 7385660 7385682 6 75 2.0 1.5 1.8 2.1 98 chr3R 7385584 intergenic not near genes chr3R 7385633 intergenic not near genes chr3R 7385682 intergenic not near genes chr3R_6_7385001 chr3R_7385001 RAL-365 1048 chr3R 7464690 7464709 chr3R 7464776 7464795 6 86 0.5 1.5 1.0 3.0 105 chr3R 7464690 intergenic not near genes chr3R 7464742 intergenic not near genes chr3R 7464795 intergenic not near genes chr3R_6_7460001 chr3R_7460001 RAL-365 1049 chr3R 7492613 7492625 chr3R 7492690 7492702 4 77 2.5 1.5 2.0 1.3 89 chr3R 7492613 intron alpha-Est10 - chr3R 7492658 intron alpha-Est10 - chr3R 7492702 intron alpha-Est10 - chr3R_4_7490001 chr3R_7490001 RAL-365 1050 chr3R 7556934 7556963 chr3R 7557027 7557056 8 93 2.0 1.0 1.5 3.2 122 chr3R 7556934 intergenic not near genes chr3R 7556995 intergenic not near genes chr3R 7557056 intergenic not near genes chr3R_8_7555001 chr3R_7555001 RAL-365 1051 chr3R 7729465 7729495 chr3R 7737402 7737433 Stalker2 8 7938 3.0 3.0 3.0 2.0 7968 chr3R 7729465 intergenic not near genes chr3R 7733449 intergenic not near genes chr3R 7737433 intergenic not near genes chr3R_8_7730001 chr3R_7730001 RAL-365 1052 chr3R 7760259 7760285 chr3R 7760768 7760794 7 509 1.5 3.5 2.5 2.0 535 chr3R 7760259 intron Sp7 + chr3R 7760526 intron Sp7 + chr3R 7760794 5` UTR Sp7 + chr3R_7_7760001 chr3R_7760001 RAL-365 1053 chr3R 8101767 8101785 chr3R 8104851 8104869 G2 4 3084 0.0 2.0 1.0 2.0 3102 chr3R 8101767 exon CG7900 + chr3R 8103318 intron CG7900 + chr3R 8104869 3` UTR CG7900 + chr3R_4_8100001 chr3R_8100001 RAL-365 1054 chr3R 8126299 8126317 chr3R 8126384 8126402 6 85 2.5 1.0 1.8 2.1 103 chr3R 8126299 intron CG9667 - chr3R 8126350 5` UTR CG9667 - chr3R 8126402 intergenic CG9667 -,Gie + chr3R_6_8125001 chr3R_8125001 RAL-365 1055 chr3R 8158031 8158049 chr3R 8158112 8158131 6 82 5.5 2.0 3.8 1.2 100 chr3R 8158031 intron grn - chr3R 8158081 intron grn - chr3R 8158131 intron grn - chr3R_6_8155001 chr3R_8155001 RAL-365 1056 chr3R 8182658 8182684 chr3R 8182752 8182778 8 94 2.0 2.5 2.2 2.5 120 chr3R 8182658 intergenic not near genes chr3R 8182718 intergenic not near genes chr3R 8182778 intergenic not near genes chr3R_8_8180001 chr3R_8180001 RAL-365 1057 chr3R 8188384 8188406 chr3R 8188469 8188491 5 85 1.5 1.5 1.5 2.0 107 chr3R 8188384 intergenic not near genes chr3R 8188438 intergenic not near genes chr3R 8188491 intergenic not near genes chr3R_5_8185001 chr3R_8185001 RAL-365 1058 chr3R 8207556 8207585 chr3R 8208401 8208430 F-element 4 845 0.5 1.0 0.8 2.2 874 chr3R 8207556 intergenic not near genes chr3R 8207993 intergenic not near genes chr3R 8208430 intergenic not near genes chr3R_4_8205001 chr3R_8205001 RAL-365 1059 chr3R 8218481 8218493 chr3R 8218575 8218584 7 92 3.5 3.5 3.5 1.6 103 chr3R 8218481 exon CG7800 + chr3R 8218532 exon CG7800 + chr3R 8218584 exon CG7800 + chr3R_7_8215001 chr3R_8215001 RAL-365 1060 chr3R 8288818 8288844 chr3R 8288941 8288967 9 122 4.5 5.0 4.8 1.6 149 chr3R 8288818 intergenic CG11671 + chr3R 8288892 intergenic CG11671 + chr3R 8288967 intergenic CG11671 +,CG11672 - chr3R_9_8285001 chr3R_8285001 RAL-365 1061 chr3R 8310057 8310085 chr3R 8310172 8310204 5 118 1.5 2.0 1.8 1.8 147 chr3R 8310057 5` UTR CG11693 - chr3R 8310130 intron CG11693 - chr3R 8310204 intron CG11693 - chr3R_5_8310001 chr3R_8310001 RAL-365 1062 chr3R 8339241 8339247 chr3R 21907534 21907536 18 13568289 20.0 15.5 17.8 1.0 13568295 chr3R 8339241 intergenic not near genes chr3R 15123388 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_18_15120001 chr3R_15120001 RAL-365 1063 chr3R 8360055 8360085 chr3R 8363881 8363911 6 3825 2.5 2.0 2.2 1.9 3856 chr3R 8360055 3` UTR CG9684 - chr3R 8361983 exon CG9684 - chr3R 8363911 intergenic CG7963 +,CG45263 - chr3R_6_8360001 chr3R_8360001 RAL-365 1064 chr3R 8403009 8403039 chr3R 8412175 8412205 roo 11 9166 2.5 1.0 1.8 3.9 9196 chr3R 8403009 intron CG45263 - chr3R 8407607 intron CG45263 - chr3R 8412205 intron CG45263 - chr3R_11_8405001 chr3R_8405001 RAL-365 1065 chr3R 8430810 8430832 chr3R 8430975 8430995 6 165 2.0 2.5 2.2 1.9 185 chr3R 8430810 intron CG45263 - chr3R 8430902 intron CG45263 - chr3R 8430995 intron CG45263 - chr3R_6_8430001 chr3R_8430001 RAL-365 1066 chr3R 8526524 8526545 chr3R 8526601 8526622 5 77 0.5 3.0 1.8 1.8 98 chr3R 8526524 3` UTR CG31259 + chr3R 8526573 3` UTR CG31259 + chr3R 8526622 3` UTR CG31259 + chr3R_5_8525001 chr3R_8525001 RAL-365 1067 chr3R 8552380 8552402 chr3R 8552460 8552481 6 80 2.0 2.0 2.0 2.0 101 chr3R 8552380 intergenic Or85d + chr3R 8552430 intergenic Or85d + chr3R 8552481 intergenic Or85d + chr3R_6_8550001 chr3R_8550001 RAL-365 1068 chr3R 8570478 8570505 chr3R 8575112 8575140 HMS-Beagle 9 4636 4.0 1.5 2.8 2.4 4662 chr3R 8570478 intergenic not near genes chr3R 8572809 intergenic not near genes chr3R 8575140 intergenic not near genes chr3R_9_8570001 chr3R_8570001 RAL-365 1069 chr3R 8576163 8576187 chr3R 8576331 8576358 7 171 3.0 1.5 2.2 2.2 195 chr3R 8576163 intergenic not near genes chr3R 8576260 intergenic not near genes chr3R 8576358 intergenic not near genes chr3R_7_8575001 chr3R_8575001 RAL-365 1070 chr3R 8601773 8601788 chr3R 8610925 8610940 roo 5 9151 2.5 1.0 1.8 1.8 9167 chr3R 8601773 intron 5-HT2B + chr3R 8606356 intron 5-HT2B + chr3R 8610940 intron 5-HT2B + chr3R_5_8605001 chr3R_8605001 RAL-365 1071 chr3R 8631509 8631542 chr3R 8631613 8631646 11 104 1.5 3.5 2.5 3.1 137 chr3R 8631509 intergenic not near genes chr3R 8631578 intergenic not near genes chr3R 8631646 intergenic not near genes chr3R_11_8630001 chr3R_8630001 RAL-365 1072 chr3R 8740245 8740274 chr3R 8740334 8740363 6 89 4.0 2.5 3.2 1.4 118 chr3R 8740245 intron CG9801 - chr3R 8740304 intron CG9801 - chr3R 8740363 intron CG9801 - chr3R_6_8740001 chr3R_8740001 RAL-365 1073 chr3R 8745751 8745780 chr3R 8745862 8745891 9 111 1.5 1.5 1.5 3.6 140 chr3R 8745751 intron CG9801 - chr3R 8745821 intron CG9801 - chr3R 8745891 intron CG9801 - chr3R_9_8745001 chr3R_8745001 RAL-365 1074 chr3R 8917890 8917907 chr3R 8917970 8917987 4 80 3.0 1.5 2.2 1.2 97 chr3R 8917890 intron pyd - chr3R 8917938 intron pyd - chr3R 8917987 intron pyd - chr3R_4_8915001 chr3R_8915001 RAL-365 1075 chr3R 9082045 9082063 chr3R 9082139 9082156 7 93 3.5 3.0 3.2 1.7 111 chr3R 9082045 intron pum - chr3R 9082100 intron pum - chr3R 9082156 intron pum - chr3R_7_9080001 chr3R_9080001 RAL-365 1076 chr3R 9095298 9095317 chr3R 9095384 9095404 4 87 0.5 2.0 1.2 1.8 106 chr3R 9095298 intron pum - chr3R 9095351 intron pum - chr3R 9095404 intron pum - chr3R_4_9095001 chr3R_9095001 RAL-365 1077 chr3R 9108866 9108879 chr3R 9108942 9108955 4 76 2.0 1.5 1.8 1.4 89 chr3R 9108866 intron pum - chr3R 9108910 intron pum - chr3R 9108955 intron pum - chr3R_4_9105001 chr3R_9105001 RAL-365 1078 chr3R 9524013 9524043 chr3R 9524101 9524130 9 88 3.0 0.5 1.8 3.2 117 chr3R 9524013 intron CG8176 + chr3R 9524072 intron CG8176 + chr3R 9524130 intron CG8176 + chr3R_9_9520001 chr3R_9520001 RAL-365 1079 chr3R 9622044 9622063 chr3R 9622132 9622151 5 88 3.0 1.0 2.0 1.7 107 chr3R 9622044 exon CG8312 + chr3R 9622098 exon CG8312 + chr3R 9622151 exon CG8312 + chr3R_5_9620001 chr3R_9620001 RAL-365 1080 chr3R 9898788 9898815 chr3R 9898880 9898907 6 92 2.0 1.5 1.8 2.1 119 chr3R 9898788 intron Glut4EF + chr3R 9898848 intron Glut4EF + chr3R 9898907 intron Glut4EF + chr3R_6_9895001 chr3R_9895001 RAL-365 1081 chr3R 10073777 10073798 chr3R 10073886 10073906 4 108 2.0 1.0 1.5 1.6 129 chr3R 10073777 intergenic nerfin-2 +,CG5361 - chr3R 10073842 3` UTR CG5361 - chr3R 10073906 exon CG5361 - chr3R_4_10070001 chr3R_10070001 RAL-365 1082 chr3R 10306952 10306980 chr3R 10312211 10312239 7 5259 25.5 11.5 18.5 0.4 5287 chr3R 10306952 exon CG43143 + chr3R 10309596 exon CG6293 - chr3R 10312239 3` UTR Bruce - chr3R_7_10305001 chr3R_10305001 RAL-365 1083 chr3R 10531873 10531893 chr3R 10531954 10531973 6 81 1.5 1.0 1.2 2.7 100 chr3R 10531873 intron hth - chr3R 10531923 intron hth - chr3R 10531973 intron hth - chr3R_6_10530001 chr3R_10530001 RAL-365 1084 chr3R 10600911 10600934 chr3R 10601192 10601213 4 281 3.5 1.0 2.2 1.2 302 chr3R 10600911 intron hth - chr3R 10601062 intron hth - chr3R 10601213 intron hth - chr3R_4_10600001 chr3R_10600001 RAL-365 1085 chr3R 10727645 10727672 chr3R 10727725 10727752 7 80 3.5 0.5 2.0 2.3 107 chr3R 10727645 intergenic not near genes chr3R 10727698 intergenic not near genes chr3R 10727752 intergenic not near genes chr3R_7_10725001 chr3R_10725001 RAL-365 1086 chr3R 10732329 10732346 chr3R 10733200 10733218 9 872 1.0 3.0 2.0 3.0 889 chr3R 10732329 intergenic not near genes chr3R 10732774 intergenic not near genes chr3R 10733218 intergenic not near genes chr3R_9_10730001 chr3R_10730001 RAL-365 1087 chr3R 10817218 10817253 chr3R 10817301 10817336 6 83 3.5 1.0 2.2 1.9 118 chr3R 10817218 3` UTR CG4089 + chr3R 10817277 3` UTR CG4089 + chr3R 10817336 3` UTR CG4089 + chr3R_6_10815001 chr3R_10815001 RAL-365 1088 chr3R 10868594 10868623 chr3R 10868672 10868701 4 78 1.5 0.5 1.0 2.0 107 chr3R 10868594 5` UTR SelR - chr3R 10868648 intergenic SelR -,Tsp86D + chr3R 10868701 intergenic Tsp86D +,SelR - chr3R_4_10865001 chr3R_10865001 RAL-365 1089 chr3R 10919689 10919712 chr3R 10919766 10919790 12 78 2.0 1.0 1.5 4.8 101 chr3R 10919689 intergenic not near genes chr3R 10919740 intergenic not near genes chr3R 10919790 intergenic not near genes chr3R_12_10915001 chr3R_10915001 RAL-365 1090 chr3R 10920047 10920079 chr3R 10920125 10920157 7 78 1.5 2.5 2.0 2.3 110 chr3R 10920047 intergenic not near genes chr3R 10920102 intergenic not near genes chr3R 10920157 intergenic not near genes chr3R_7_10920001 chr3R_10920001 RAL-365 1091 chr3R 10963560 10963586 chr3R 10963654 10963680 7 94 1.5 1.5 1.5 2.8 120 chr3R 10963560 intergenic not near genes chr3R 10963620 intergenic not near genes chr3R 10963680 intergenic not near genes chr3R_7_10960001 chr3R_10960001 RAL-365 1092 chr3R 10987280 10987309 chr3R 10988145 10988176 8 866 3.5 3.0 3.2 1.9 896 chr3R 10987280 intron CG34114 + chr3R 10987728 intron CG34114 + chr3R 10988176 intron CG34114 + chr3R_8_10985001 chr3R_10985001 RAL-365 1093 chr3R 11048280 11048302 chr3R 11048443 11048460 5 162 3.5 0.5 2.0 1.7 180 chr3R 11048280 3` UTR CG34114 + chr3R 11048370 3` UTR CG34114 + chr3R 11048460 3` UTR CG34114 + chr3R_5_11045001 chr3R_11045001 RAL-365 1094 chr3R 11151666 11151688 chr3R 11156559 11156581 5 4893 21.0 6.5 13.8 0.3 4915 chr3R 11151666 3` UTR Ugt86Di - chr3R 11154124 intergenic Ugt86Di - chr3R 11156581 intergenic Ugt86Dc + chr3R_5_11150001 chr3R_11150001 RAL-365 1095 chr3R 11279842 11279868 chr3R 11279971 11279997 8 129 0.0 1.0 0.5 5.3 155 chr3R 11279842 intron CR31386 - chr3R 11279920 intron CR31386 - chr3R 11279997 intron CR31386 - chr3R_8_11275001 chr3R_11275001 RAL-365 1096 chr3R 11307193 11307218 chr3R 11307280 11307304 8 87 2.0 1.0 1.5 3.2 111 chr3R 11307193 intergenic not near genes chr3R 11307248 intergenic not near genes chr3R 11307304 intergenic not near genes chr3R_8_11305001 chr3R_11305001 RAL-365 1097 chr3R 11379240 11379267 chr3R 11388395 11388422 roo 9 9155 1.5 1.5 1.5 3.6 9182 chr3R 11379240 intron pros + chr3R 11383831 intron pros + chr3R 11388422 intron pros + chr3R_9_11380001 chr3R_11380001 RAL-365 1098 chr3R 11533942 11533972 chr3R 11534026 11534056 8 84 0.5 1.0 0.8 4.4 114 chr3R 11533942 3` UTR dpr4 - chr3R 11533999 3` UTR dpr4 - chr3R 11534056 3` UTR dpr4 - chr3R_8_11530001 chr3R_11530001 RAL-365 1099 chr3R 11545977 11545991 chr3R 11546068 11546085 6 94 0.5 2.0 1.2 2.7 108 chr3R 11545977 intergenic not near genes chr3R 11546031 intergenic not near genes chr3R 11546085 intergenic not near genes chr3R_6_11545001 chr3R_11545001 RAL-365 1100 chr3R 11612441 11612468 chr3R 11612518 11612544 14 77 4.0 1.5 2.8 3.7 103 chr3R 11612441 intron Jupiter - chr3R 11612492 intron Jupiter - chr3R 11612544 intron Jupiter - chr3R_14_11610001 chr3R_11610001 RAL-365 1101 chr3R 11656497 11656532 chr3R 11656577 11656612 11 80 4.0 2.0 3.0 2.8 115 chr3R 11656497 5` UTR CG42327 + chr3R 11656554 5` UTR CG42327 + chr3R 11656612 5` UTR CG42327 + chr3R_11_11655001 chr3R_11655001 RAL-365 1102 chr3R 11665942 11665960 chr3R 11666092 11666111 5 150 0.5 1.5 1.0 2.5 169 chr3R 11665942 intron CG42327 + chr3R 11666026 intron CG42327 + chr3R 11666111 intron CG42327 + chr3R_5_11665001 chr3R_11665001 RAL-365 1103 chr3R 11689743 11689754 chr3R 11689825 11689835 5 82 2.0 4.0 3.0 1.2 92 chr3R 11689743 exon CG6908 - chr3R 11689789 exon CG6908 - chr3R 11689835 exon CG6908 - chr3R_5_11685001 chr3R_11685001 RAL-365 1104 chr3R 11694727 11694753 chr3R 11694820 11694846 4 93 0.5 4.0 2.2 1.2 119 chr3R 11694727 intergenic Fer3 - chr3R 11694786 intergenic Fer3 - chr3R 11694846 intergenic not near genes chr3R_4_11690001 chr3R_11690001 RAL-365 1105 chr3R 11834168 11834200 chr3R 11834251 11834283 10 83 2.5 2.5 2.5 2.9 115 chr3R 11834168 intron CG6959 - chr3R 11834226 intron CG6959 - chr3R 11834283 intron CG6959 - chr3R_10_11830001 chr3R_11830001 RAL-365 1106 chr3R 11840060 11840069 chr3R 11840157 11840166 4 97 5.5 0.0 2.8 1.1 106 chr3R 11840060 intron CG6959 - chr3R 11840113 intron CG6959 - chr3R 11840166 intron CG6959 - chr3R_4_11840001 chr3R_11840001 RAL-365 1107 chr3R 11965167 11965201 chr3R 11965245 11965278 9 78 1.0 1.5 1.2 4.1 111 chr3R 11965167 3` UTR CG12213 - chr3R 11965222 3` UTR CG12213 - chr3R 11965278 3` UTR CG12213 - chr3R_9_11965001 chr3R_11965001 RAL-365 1108 chr3R 12022886 12022914 chr3R 12025063 12025091 pogo 8 2176 3.0 2.0 2.5 2.3 2205 chr3R 12022886 intergenic not near genes chr3R 12023988 intergenic not near genes chr3R 12025091 intergenic not near genes chr3R_8_12020001 chr3R_12020001 RAL-365 1109 chr3R 12045177 12045192 chr3R 12045253 12045268 4 76 3.0 0.5 1.8 1.4 91 chr3R 12045177 intergenic not near genes chr3R 12045222 intergenic not near genes chr3R 12045268 intergenic not near genes chr3R_4_12045001 chr3R_12045001 RAL-365 1110 chr3R 12081997 12082029 chr3R 12082073 12082105 7 76 2.0 3.0 2.5 2.0 108 chr3R 12081997 intron CG14741 - chr3R 12082051 intron CG14741 - chr3R 12082105 intron CG14741 - chr3R_7_12080001 chr3R_12080001 RAL-365 1111 chr3R 12111905 12111920 chr3R 12111981 12111996 5 75 0.0 0.0 0.0 5.0 91 chr3R 12111905 intergenic dpr17 + chr3R 12111950 intergenic not near genes chr3R 12111996 intergenic not near genes chr3R_5_12110001 chr3R_12110001 RAL-365 1112 chr3R 12546458 12546479 chr3R 12546541 12546562 6 83 2.0 2.5 2.2 1.9 104 chr3R 12546458 intron Octbeta3R - chr3R 12546510 intron Octbeta3R - chr3R 12546562 intron Octbeta3R - chr3R_6_12545001 chr3R_12545001 RAL-365 1113 chr3R 12724320 12724340 chr3R 12724398 12724418 5 78 3.5 3.5 3.5 1.1 98 chr3R 12724320 intergenic not near genes chr3R 12724369 intergenic not near genes chr3R 12724418 intergenic not near genes chr3R_5_12720001 chr3R_12720001 RAL-365 1114 chr3R 12733477 12733506 chr3R 12733554 12733583 4 77 1.0 2.0 1.5 1.6 106 chr3R 12733477 intergenic not near genes chr3R 12733530 intergenic not near genes chr3R 12733583 intergenic not near genes chr3R_4_12730001 chr3R_12730001 RAL-365 1115 chr3R 12763126 12763154 chr3R 12763203 12763231 4 77 0.0 0.5 0.2 3.3 105 chr3R 12763126 intron beat-Vc - chr3R 12763178 intron beat-Vc - chr3R 12763231 intron beat-Vc - chr3R_4_12760001 chr3R_12760001 RAL-365 1116 chr3R 12805860 12805884 chr3R 12805946 12805970 5 86 1.5 1.0 1.2 2.3 110 chr3R 12805860 intergenic not near genes chr3R 12805915 intergenic not near genes chr3R 12805970 intergenic not near genes chr3R_5_12805001 chr3R_12805001 RAL-365 1117 chr3R 12920163 12920183 chr3R 12925366 12925386 copia 5 5203 2.0 3.0 2.5 1.4 5223 chr3R 12920163 intron beat-Vb + chr3R 12922774 intron beat-Vb + chr3R 12925386 intron beat-Vb + chr3R_5_12920001 chr3R_12920001 RAL-365 1118 chr3R 13067836 13067868 chr3R 13067916 13067945 10 80 1.0 0.0 0.5 6.7 109 chr3R 13067836 intron sim + chr3R 13067890 intron sim + chr3R 13067945 intron sim + chr3R_10_13065001 chr3R_13065001 RAL-365 1119 chr3R 13138323 13138353 chr3R 13138411 13138441 8 88 0.5 1.0 0.8 4.4 118 chr3R 13138323 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13138382 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13138441 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_8_13135001 chr3R_13135001 RAL-365 1120 chr3R 13143049 13143066 chr3R 13148625 13148642 mdg3 4 5576 2.0 2.5 2.2 1.2 5593 chr3R 13143049 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13145846 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13148642 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_4_13145001 chr3R_13145001 RAL-365 1121 chr3R 13435389 13435420 chr3R 13435564 13435595 7 175 1.0 2.0 1.5 2.8 206 chr3R 13435389 intergenic yrt - chr3R 13435492 intergenic not near genes chr3R 13435595 intergenic not near genes chr3R_7_13435001 chr3R_13435001 RAL-365 1122 chr3R 13546452 13546471 chr3R 13546697 13546716 5 245 0.5 4.0 2.2 1.6 264 chr3R 13546452 intergenic not near genes chr3R 13546584 intergenic not near genes chr3R 13546716 intergenic not near genes chr3R_5_13545001 chr3R_13545001 RAL-365 1123 chr3R 13598093 13598116 chr3R 13598171 13598194 4 78 0.0 2.0 1.0 2.0 101 chr3R 13598093 intergenic not near genes chr3R 13598144 intergenic not near genes chr3R 13598194 intergenic not near genes chr3R_4_13595001 chr3R_13595001 RAL-365 1124 chr3R 13603056 13603073 chr3R 13603147 13603164 4 91 3.0 2.0 2.5 1.1 108 chr3R 13603056 intergenic not near genes chr3R 13603110 intergenic not near genes chr3R 13603164 intergenic not near genes chr3R_4_13600001 chr3R_13600001 RAL-365 1125 chr3R 13625700 13625721 chr3R 13625781 13625801 5 81 0.5 0.5 0.5 3.3 101 chr3R 13625700 intergenic not near genes chr3R 13625750 intergenic not near genes chr3R 13625801 intergenic not near genes chr3R_5_13625001 chr3R_13625001 RAL-365 1126 chr3R 13659743 13659844 chr3R 13659849 13659933 4 93 0.0 0.0 0.0 4.0 190 chr3R 13659743 intron Hrb87F - chr3R 13659838 intron Hrb87F - chr3R 13659933 intron Hrb87F - chr3R_4_13655001 chr3R_13655001 RAL-365 1127 chr3R 13693028 13693034 chr3R 21907534 21907535 5 8214506 9.0 15.5 12.2 0.4 8214507 chr3R 13693028 3` UTR flfl + chr3R 17800282 exon CG17803 - chr3R 21907535 intergenic CG6678 + chr3R_5_17800001 chr3R_17800001 RAL-365 1128 chr3R 13847507 13847528 chr3R 13847583 13847604 4 76 1.5 2.0 1.8 1.4 97 chr3R 13847507 intergenic not near genes chr3R 13847556 intergenic not near genes chr3R 13847604 intergenic not near genes chr3R_4_13845001 chr3R_13845001 RAL-365 1129 chr3R 13863680 13863712 chr3R 13863768 13863800 4 88 1.5 1.5 1.5 1.6 120 chr3R 13863680 intergenic not near genes chr3R 13863740 intergenic not near genes chr3R 13863800 intergenic not near genes chr3R_4_13860001 chr3R_13860001 RAL-365 1130 chr3R 13880548 13880566 chr3R 13880666 13880686 5 119 3.0 2.0 2.5 1.4 138 chr3R 13880548 intergenic not near genes chr3R 13880617 intergenic not near genes chr3R 13880686 intergenic not near genes chr3R_5_13880001 chr3R_13880001 RAL-365 1131 chr3R 13925995 13926019 chr3R 13926070 13926096 9 76 2.5 3.5 3.0 2.2 101 chr3R 13925995 intergenic not near genes chr3R 13926046 intergenic not near genes chr3R 13926096 intergenic not near genes chr3R_9_13925001 chr3R_13925001 RAL-365 1132 chr3R 13935300 13935308 chr3R 13935374 13935386 4 77 4.5 0.0 2.2 1.2 86 chr3R 13935300 intergenic not near genes chr3R 13935343 intergenic not near genes chr3R 13935386 intergenic not near genes chr3R_4_13935001 chr3R_13935001 RAL-365 1133 chr3R 13975384 13975408 chr3R 13975464 13975487 6 80 1.0 2.0 1.5 2.4 103 chr3R 13975384 intron rdx - chr3R 13975436 intron rdx - chr3R 13975487 intron rdx - chr3R_6_13975001 chr3R_13975001 RAL-365 1134 chr3R 13994304 13994332 chr3R 13994559 13994587 7 255 2.5 1.5 2.0 2.3 283 chr3R 13994304 intron rdx - chr3R 13994446 intron rdx - chr3R 13994587 intron rdx - chr3R_7_13990001 chr3R_13990001 RAL-365 1135 chr3R 14014282 14014303 chr3R 14014413 14014435 5 132 2.0 0.0 1.0 2.5 153 chr3R 14014282 intron rdx - chr3R 14014358 intron rdx - chr3R 14014435 intron rdx - chr3R_5_14010001 chr3R_14010001 RAL-365 1136 chr3R 14021649 14021675 chr3R 14023466 14023492 S-element 4 1817 0.5 0.5 0.5 2.7 1843 chr3R 14021649 intron rdx - chr3R 14022570 intron rdx - chr3R 14023492 intron rdx - chr3R_4_14020001 chr3R_14020001 RAL-365 1137 chr3R 14117444 14117467 chr3R 14117520 14117543 8 76 4.5 2.0 3.2 1.9 99 chr3R 14117444 intron Kif19A - chr3R 14117494 intron Kif19A - chr3R 14117543 intron Kif19A - chr3R_8_14115001 chr3R_14115001 RAL-365 1138 chr3R 14163662 14163690 chr3R 14163738 14163766 6 76 2.0 3.5 2.8 1.6 104 chr3R 14163662 intergenic CG3199 + chr3R 14163714 intergenic CG3199 + chr3R 14163766 intergenic CG3199 + chr3R_6_14160001 chr3R_14160001 RAL-365 1139 chr3R 14169743 14169754 chr3R 14169826 14169837 4 83 0.0 0.0 0.0 4.0 94 chr3R 14169743 3` UTR Dop1R1 - chr3R 14169790 3` UTR Dop1R1 - chr3R 14169837 3` UTR Dop1R1 - chr3R_4_14165001 chr3R_14165001 RAL-365 1140 chr3R 14180817 14180838 chr3R 14185581 14185603 F-element 6 4764 1.0 0.0 0.5 4.0 4786 chr3R 14180817 intron Dop1R1 - chr3R 14183210 intron Dop1R1 - chr3R 14185603 intron Dop1R1 - chr3R_6_14180001 chr3R_14180001 RAL-365 1141 chr3R 14257341 14257360 chr3R 14257437 14257459 5 98 1.0 2.5 1.8 1.8 118 chr3R 14257341 intron Aats-met - chr3R 14257400 intron Aats-met - chr3R 14257459 intron Aats-met - chr3R_5_14255001 chr3R_14255001 RAL-365 1142 chr3R 14656788 14656815 chr3R 14657265 14657292 5 477 1.0 2.0 1.5 2.0 504 chr3R 14656788 intergenic not near genes chr3R 14657040 intergenic CG3505 + chr3R 14657292 intergenic CG3505 + chr3R_5_14655001 chr3R_14655001 RAL-365 1143 chr3R 14704392 14704416 chr3R 14704469 14704492 6 77 1.0 2.0 1.5 2.4 100 chr3R 14704392 intron kibra - chr3R 14704442 intron kibra - chr3R 14704492 intron kibra - chr3R_6_14700001 chr3R_14700001 RAL-365 1144 chr3R 14776009 14776027 chr3R 14776100 14776118 5 91 2.5 1.5 2.0 1.7 109 chr3R 14776009 intron jvl + chr3R 14776064 intron jvl + chr3R 14776118 intron jvl + chr3R_5_14775001 chr3R_14775001 RAL-365 1145 chr3R 14779076 14779085 chr3R 14779156 14779165 5 80 3.0 4.0 3.5 1.1 89 chr3R 14779076 intron jvl + chr3R 14779120 intron jvl + chr3R 14779165 intron jvl + chr3R_5_14775001 chr3R_14775001 RAL-365 1146 chr3R 14876351 14876380 chr3R 14876714 14876743 4 363 2.5 1.5 2.0 1.3 392 chr3R 14876351 intergenic not near genes chr3R 14876547 intergenic not near genes chr3R 14876743 intergenic not near genes chr3R_4_14875001 chr3R_14875001 RAL-365 1147 chr3R 14980029 14980050 chr3R 14980136 14980157 4 107 0.5 2.0 1.2 1.8 128 chr3R 14980029 intergenic not near genes chr3R 14980093 intergenic not near genes chr3R 14980157 intergenic not near genes chr3R_4_14980001 chr3R_14980001 RAL-365 1148 chr3R 15048344 15048376 chr3R 15048466 15048498 7 122 1.0 3.0 2.0 2.3 154 chr3R 15048344 intergenic not near genes chr3R 15048421 intergenic not near genes chr3R 15048498 intergenic not near genes chr3R_7_15045001 chr3R_15045001 RAL-365 1149 chr3R 15102494 15102531 chr3R 15109751 15109786 412 4 7256 0.5 0.5 0.5 2.7 7292 chr3R 15102494 intron CG42788 - chr3R 15106140 intron CG42788 - chr3R 15109786 intron CG42788 - chr3R_4_15105001 chr3R_15105001 RAL-365 1150 chr3R 15416250 15416279 chr3R 15416330 15416359 11 80 2.0 3.5 2.8 2.9 109 chr3R 15416250 3` UTR Atx2 + chr3R 15416304 3` UTR Atx2 + chr3R 15416359 3` UTR Atx2 + chr3R_11_15415001 chr3R_15415001 RAL-365 1151 chr3R 15470987 15471018 chr3R 15471065 15471096 7 78 2.5 1.5 2.0 2.3 109 chr3R 15470987 intron AdamTS-A - chr3R 15471042 intron AdamTS-A - chr3R 15471096 intron AdamTS-A - chr3R_7_15470001 chr3R_15470001 RAL-365 1152 chr3R 15504171 15504206 chr3R 15504261 15504293 7 90 2.5 2.0 2.2 2.2 122 chr3R 15504171 intergenic not near genes chr3R 15504232 intergenic not near genes chr3R 15504293 intergenic not near genes chr3R_7_15500001 chr3R_15500001 RAL-365 1153 chr3R 15601165 15601194 chr3R 15608687 15608716 412 8 7522 5.0 4.5 4.8 1.4 7551 chr3R 15601165 intergenic not near genes chr3R 15604940 intergenic not near genes chr3R 15608716 intergenic not near genes chr3R_8_15600001 chr3R_15600001 RAL-365 1154 chr3R 15618750 15618762 chr3R 15626224 15626236 blood 5 7474 1.0 4.0 2.5 1.4 7486 chr3R 15618750 intergenic not near genes chr3R 15622493 intergenic not near genes chr3R 15626236 intergenic not near genes chr3R_5_15620001 chr3R_15620001 RAL-365 1155 chr3R 15691186 15691324 chr3R 15691291 15691410 5 94 0.0 0.0 0.0 5.0 224 chr3R 15691186 intergenic not near genes chr3R 15691298 intergenic not near genes chr3R 15691410 intergenic not near genes chr3R_5_15690001 chr3R_15690001 RAL-365 1156 chr3R 15709637 15709660 chr3R 15709765 15709789 4 129 1.5 0.5 1.0 2.0 152 chr3R 15709637 intergenic not near genes chr3R 15709713 intergenic not near genes chr3R 15709789 intergenic not near genes chr3R_4_15705001 chr3R_15705001 RAL-365 1157 chr3R 15937428 15937439 chr3R 15937512 15937526 4 86 3.5 3.5 3.5 0.9 98 chr3R 15937428 intron Sap47 + chr3R 15937477 intron Sap47 + chr3R 15937526 intron Sap47 + chr3R_4_15935001 chr3R_15935001 RAL-365 1158 chr3R 15952918 15952925 chr3R 15952998 15953006 4 81 1.5 4.5 3.0 1.0 88 chr3R 15952918 intron Sap47 + chr3R 15952962 intron Sap47 + chr3R 15953006 intron Sap47 + chr3R_4_15950001 chr3R_15950001 RAL-365 1159 chr3R 15954409 15954429 chr3R 15954485 15954506 8 77 3.0 2.0 2.5 2.3 97 chr3R 15954409 intron Sap47 + chr3R 15954458 intron Sap47 + chr3R 15954506 intron Sap47 + chr3R_8_15950001 chr3R_15950001 RAL-365 1160 chr3R 16033412 16033438 chr3R 16033493 16033519 4 81 0.5 1.0 0.8 2.2 107 chr3R 16033412 intron pnr + chr3R 16033466 intron pnr + chr3R 16033519 intron pnr + chr3R_4_16030001 chr3R_16030001 RAL-365 1161 chr3R 16246526 16246549 chr3R 16246602 16246624 4 76 0.0 2.0 1.0 2.0 98 chr3R 16246526 intron tara + chr3R 16246575 intron tara + chr3R 16246624 intron tara + chr3R_4_16245001 chr3R_16245001 RAL-365 1162 chr3R 16472584 16472599 chr3R 16472656 16472672 7 75 4.5 4.0 4.2 1.3 88 chr3R 16472584 intergenic Gyc-89Da + chr3R 16472628 5` UTR Gyc-89Da + chr3R 16472672 5` UTR Gyc-89Da + chr3R_7_16470001 chr3R_16470001 RAL-365 1163 chr3R 16756331 16756349 chr3R 16762522 16762540 diver 6 6190 2.0 2.5 2.2 1.9 6209 chr3R 16756331 intron bxd - chr3R 16759436 intron bxd - chr3R 16762540 intron bxd - chr3R_6_16755001 chr3R_16755001 RAL-365 1164 chr3R 16771613 16771633 chr3R 16771689 16771709 4 76 2.0 1.5 1.8 1.4 96 chr3R 16771613 intron bxd - chr3R 16771661 intron bxd - chr3R 16771709 intron bxd - chr3R_4_16770001 chr3R_16770001 RAL-365 1165 chr3R 16844842 16844876 chr3R 16844918 16844953 7 77 1.5 1.0 1.2 3.2 111 chr3R 16844842 intron iab-8 - chr3R 16844898 intron iab-8 - chr3R 16844953 intron iab-8 - chr3R_7_16840001 chr3R_16840001 RAL-365 1166 chr3R 17121521 17121552 chr3R 17121716 17121747 8 195 2.5 0.5 1.5 3.2 226 chr3R 17121521 intron cher - chr3R 17121634 intron,exon cher -,CG42779 + chr3R 17121747 intron,exon cher -,CG42779 + chr3R_8_17120001 chr3R_17120001 RAL-365 1167 chr3R 17183037 17183047 chr3R 17183370 17183379 5 333 4.0 0.5 2.2 1.6 342 chr3R 17183037 intron Mur89F - chr3R 17183208 intron Mur89F - chr3R 17183379 intron Mur89F - chr3R_5_17180001 chr3R_17180001 RAL-365 1168 chr3R 17294660 17294678 chr3R 17295088 17295106 BS 4 428 5.5 0.0 2.8 1.1 446 chr3R 17294660 intergenic not near genes chr3R 17294883 intergenic not near genes chr3R 17295106 intergenic not near genes chr3R_4_17290001 chr3R_17290001 RAL-365 1169 chr3R 17342574 17342596 chr3R 17343053 17343075 7 479 3.0 10.5 6.8 0.9 501 chr3R 17342574 intron beat-IIa - chr3R 17342824 intron beat-IIa - chr3R 17343075 intron beat-IIa - chr3R_7_17340001 chr3R_17340001 RAL-365 1170 chr3R 17407004 17407032 chr3R 17407104 17407134 5 102 0.5 1.5 1.0 2.5 130 chr3R 17407004 intron CG42798 + chr3R 17407069 5` UTR CG42798 + chr3R 17407134 exon CG42798 + chr3R_5_17405001 chr3R_17405001 RAL-365 1171 chr3R 17497965 17497990 chr3R 17498051 17498076 8 86 3.5 1.0 2.2 2.5 111 chr3R 17497965 intron Dscam3 - chr3R 17498020 intron Dscam3 - chr3R 17498076 intron Dscam3 - chr3R_8_17495001 chr3R_17495001 RAL-365 1172 chr3R 17504816 17504846 chr3R 17504977 17505007 5 161 1.0 3.0 2.0 1.7 191 chr3R 17504816 intron Dscam3 - chr3R 17504912 intron Dscam3 - chr3R 17505007 intron Dscam3 - chr3R_5_17500001 chr3R_17500001 RAL-365 1173 chr3R 17517632 17517658 chr3R 17517766 17517792 8 134 0.5 4.0 2.2 2.5 160 chr3R 17517632 intergenic not near genes chr3R 17517712 intergenic CR44349 - chr3R 17517792 intergenic CR44349 - chr3R_8_17515001 chr3R_17515001 RAL-365 1174 chr3R 17521576 17521589 chr3R 17521727 17521748 5 158 0.0 6.5 3.2 1.2 172 chr3R 17521576 intergenic not near genes chr3R 17521662 intergenic not near genes chr3R 17521748 intergenic not near genes chr3R_5_17520001 chr3R_17520001 RAL-365 1175 chr3R 17522038 17522228 chr3R 17522128 17522320 5 91 1.0 3.0 2.0 1.7 282 chr3R 17522038 intergenic not near genes chr3R 17522179 intergenic not near genes chr3R 17522320 intergenic not near genes chr3R_5_17520001 chr3R_17520001 RAL-365 1176 chr3R 17591285 17591320 chr3R 17591721 17591754 F-element 4 435 3.0 0.0 1.5 1.6 469 chr3R 17591285 intergenic not near genes chr3R 17591520 intergenic not near genes chr3R 17591754 intergenic not near genes chr3R_4_17590001 chr3R_17590001 RAL-365 1177 chr3R 17646799 17646822 chr3R 17646890 17646909 4 90 2.0 0.0 1.0 2.0 110 chr3R 17646799 intergenic not near genes chr3R 17646854 intergenic not near genes chr3R 17646909 intergenic not near genes chr3R_4_17645001 chr3R_17645001 RAL-365 1178 chr3R 17726239 17726272 chr3R 17726330 17726364 13 92 1.0 3.0 2.0 4.3 125 chr3R 17726239 intron Lgr1 + chr3R 17726302 intron Lgr1 + chr3R 17726364 intron Lgr1 + chr3R_13_17725001 chr3R_17725001 RAL-365 1179 chr3R 17743215 17743235 chr3R 17743296 17743316 6 81 3.5 0.0 1.8 2.1 101 chr3R 17743215 intron TyrRII + chr3R 17743266 intron TyrRII + chr3R 17743316 intron TyrRII + chr3R_6_17740001 chr3R_17740001 RAL-365 1180 chr3R 17746607 17746616 chr3R 17746682 17746692 5 76 3.5 0.5 2.0 1.7 85 chr3R 17746607 3` UTR TyrRII + chr3R 17746650 3` UTR TyrRII + chr3R 17746692 3` UTR TyrRII + chr3R_5_17745001 chr3R_17745001 RAL-365 1181 chr3R 17748373 17748401 chr3R 17748485 17748513 6 112 1.5 1.5 1.5 2.4 140 chr3R 17748373 intergenic not near genes chr3R 17748443 intergenic not near genes chr3R 17748513 intergenic not near genes chr3R_6_17745001 chr3R_17745001 RAL-365 1182 chr3R 17823208 17823235 chr3R 17823293 17823320 7 85 1.0 1.5 1.2 3.2 112 chr3R 17823208 intron tinc + chr3R 17823264 intron tinc + chr3R 17823320 intron tinc + chr3R_7_17820001 chr3R_17820001 RAL-365 1183 chr3R 17881893 17881901 chr3R 17881986 17881993 6 93 2.5 0.0 1.2 2.7 100 chr3R 17881893 exon Rim - chr3R 17881943 intron Rim - chr3R 17881993 intron Rim - chr3R_6_17880001 chr3R_17880001 RAL-365 1184 chr3R 17925860 17925887 chr3R 17927326 17927354 hobo 6 1467 3.5 3.5 3.5 1.3 1494 chr3R 17925860 intron cpo + chr3R 17926607 intron cpo + chr3R 17927354 intron cpo + chr3R_6_17925001 chr3R_17925001 RAL-365 1185 chr3R 18068000 18068006 chr3R 18068082 18068088 5 82 0.0 1.0 0.5 3.3 88 chr3R 18068000 intergenic not near genes chr3R 18068044 intergenic not near genes chr3R 18068088 intergenic not near genes chr3R_5_18065001 chr3R_18065001 RAL-365 1186 chr3R 18159820 18159842 chr3R 18159907 18159926 6 86 0.5 0.0 0.2 5.0 106 chr3R 18159820 3` UTR CR45104 - chr3R 18159873 3` UTR CR45104 - chr3R 18159926 intergenic CR45104 -,CG14315 + chr3R_6_18155001 chr3R_18155001 RAL-365 1187 chr3R 18330773 18330804 chr3R 18330851 18330882 8 78 2.5 1.0 1.8 2.9 109 chr3R 18330773 intergenic CG15803 - chr3R 18330828 intergenic CG15803 - chr3R 18330882 intergenic CG15803 - chr3R_8_18330001 chr3R_18330001 RAL-365 1188 chr3R 18468569 18468600 chr3R 18468672 18468703 9 102 3.0 2.0 2.5 2.6 134 chr3R 18468569 intron fru - chr3R 18468636 intron fru - chr3R 18468703 intron fru - chr3R_9_18465001 chr3R_18465001 RAL-365 1189 chr3R 18501593 18501628 chr3R 18501674 18501709 6 80 2.0 2.0 2.0 2.0 116 chr3R 18501593 intron fru - chr3R 18501651 intron fru - chr3R 18501709 intron fru - chr3R_6_18500001 chr3R_18500001 RAL-365 1190 chr3R 18615387 18615403 chr3R 18615476 18615492 4 88 1.0 1.5 1.2 1.8 105 chr3R 18615387 intron,intron qin +,CG14304 - chr3R 18615440 intron,intron qin +,CG14304 - chr3R 18615492 intron,intron qin +,CG14304 - chr3R_4_18615001 chr3R_18615001 RAL-365 1191 chr3R 18617726 18617743 chr3R 18617806 18617823 5 80 0.5 1.5 1.0 2.5 97 chr3R 18617726 intron,intron qin +,CG14304 - chr3R 18617774 intron,intron qin +,CG14304 - chr3R 18617823 intron,intron qin +,CG14304 - chr3R_5_18615001 chr3R_18615001 RAL-365 1192 chr3R 18697555 18697579 chr3R 18697633 18697657 6 78 1.0 2.0 1.5 2.4 102 chr3R 18697555 intergenic not near genes chr3R 18697606 intergenic not near genes chr3R 18697657 intergenic not near genes chr3R_6_18695001 chr3R_18695001 RAL-365 1193 chr3R 18766787 18766810 chr3R 18766865 18766888 9 78 1.0 3.5 2.2 2.8 101 chr3R 18766787 intron CG7720 - chr3R 18766838 intron CG7720 - chr3R 18766888 intron CG7720 - chr3R_9_18765001 chr3R_18765001 RAL-365 1194 chr3R 18770295 18770316 chr3R 18770377 18770398 7 82 1.0 1.0 1.0 3.5 103 chr3R 18770295 intron CG7720 - chr3R 18770346 intron CG7720 - chr3R 18770398 intron CG7720 - chr3R_7_18770001 chr3R_18770001 RAL-365 1195 chr3R 18781696 18781725 chr3R 18781772 18781800 4 75 1.5 1.5 1.5 1.6 104 chr3R 18781696 intron CG7720 - chr3R 18781748 intron CG7720 - chr3R 18781800 intron CG7720 - chr3R_4_18780001 chr3R_18780001 RAL-365 1196 chr3R 18812086 18812103 chr3R 18812164 18812181 7 78 4.0 3.5 3.8 1.5 95 chr3R 18812086 intron CG18208 - chr3R 18812134 intron CG18208 - chr3R 18812181 intron CG18208 - chr3R_7_18810001 chr3R_18810001 RAL-365 1197 chr3R 19079572 19079602 chr3R 19079657 19079687 6 84 0.0 0.0 0.0 6.0 115 chr3R 19079572 intron cdi - chr3R 19079630 intron cdi - chr3R 19079687 intron cdi - chr3R_6_19075001 chr3R_19075001 RAL-365 1198 chr3R 19136408 19136420 chr3R 19139795 19139806 Bari1 7 3386 24.0 13.0 18.5 0.4 3398 chr3R 19136408 exon Cyp12a4 + chr3R 19138107 intergenic not near genes chr3R 19139806 3` UTR Ppcs - chr3R_7_19135001 chr3R_19135001 RAL-365 1199 chr3R 19205612 19205631 chr3R 19205693 19205712 4 81 2.0 1.0 1.5 1.6 100 chr3R 19205612 intergenic not near genes chr3R 19205662 intergenic not near genes chr3R 19205712 intergenic not near genes chr3R_4_19205001 chr3R_19205001 RAL-365 1200 chr3R 19278753 19278768 chr3R 19278829 19278843 4 76 1.0 2.0 1.5 1.6 90 chr3R 19278753 intergenic CR44173 - chr3R 19278798 3` UTR CR44173 - chr3R 19278843 3` UTR CR44173 - chr3R_4_19275001 chr3R_19275001 RAL-365 1201 chr3R 19533383 19533406 chr3R 19533459 19533482 5 77 2.0 3.5 2.8 1.3 99 chr3R 19533383 intron Dys + chr3R 19533432 intron Dys + chr3R 19533482 intron Dys + chr3R_5_19530001 chr3R_19530001 RAL-365 1202 chr3R 19702321 19702350 chr3R 19702403 19702432 9 82 2.5 0.0 1.2 4.1 111 chr3R 19702321 intergenic not near genes chr3R 19702376 intergenic not near genes chr3R 19702432 intergenic not near genes chr3R_9_19700001 chr3R_19700001 RAL-365 1203 chr3R 19945969 19945989 chr3R 19946072 19946092 6 102 2.5 0.0 1.2 2.7 123 chr3R 19945969 intron Hs6st - chr3R 19946030 intron Hs6st - chr3R 19946092 intron Hs6st - chr3R_6_19945001 chr3R_19945001 RAL-365 1204 chr3R 19955357 19955364 chr3R 19955458 19955465 4 101 2.5 2.5 2.5 1.1 108 chr3R 19955357 intron Hs6st - chr3R 19955411 intron Hs6st - chr3R 19955465 intron Hs6st - chr3R_4_19955001 chr3R_19955001 RAL-365 1205 chr3R 20045705 20045721 chr3R 20045790 20045805 4 85 1.0 0.0 0.5 2.7 100 chr3R 20045705 intron,5` UTR,3` UTR CG17193 -,CG33934 +,Indy-2 + chr3R 20045755 intron,5` UTR,3` UTR CG17193 -,CG33934 +,Indy-2 + chr3R 20045805 intron,5` UTR,3` UTR CG17193 -,CG33934 +,Indy-2 + chr3R_4_20045001 chr3R_20045001 RAL-365 1206 chr3R 20072082 20072107 chr3R 20072205 20072230 8 123 1.0 1.5 1.2 3.6 148 chr3R 20072082 intergenic not near genes chr3R 20072156 intergenic not near genes chr3R 20072230 intergenic not near genes chr3R_8_20070001 chr3R_20070001 RAL-365 1207 chr3R 20175093 20175117 chr3R 20175176 20175199 8 82 1.5 1.5 1.5 3.2 106 chr3R 20175093 intergenic CG5023 + chr3R 20175146 intergenic CG5023 + chr3R 20175199 intergenic CG5023 + chr3R_8_20175001 chr3R_20175001 RAL-365 1208 chr3R 20205574 20205594 chr3R 20205696 20205716 6 122 1.5 2.5 2.0 2.0 142 chr3R 20205574 intron Nlg4 + chr3R 20205645 intron Nlg4 + chr3R 20205716 intron Nlg4 + chr3R_6_20205001 chr3R_20205001 RAL-365 1209 chr3R 20252224 20252245 chr3R 20252302 20252323 4 78 0.0 0.0 0.0 4.0 99 chr3R 20252224 intergenic not near genes chr3R 20252274 intergenic cic + chr3R 20252323 intergenic cic + chr3R_4_20250001 chr3R_20250001 RAL-365 1210 chr3R 20266516 20266547 chr3R 20272987 20273018 Burdock 6 6471 0.0 1.0 0.5 4.0 6502 chr3R 20266516 intron cic + chr3R 20269767 intron cic + chr3R 20273018 intron cic + chr3R_6_20265001 chr3R_20265001 RAL-365 1211 chr3R 20282290 20282310 chr3R 20282366 20282386 5 76 0.0 3.5 1.8 1.8 96 chr3R 20282290 intron cic + chr3R 20282338 intron cic + chr3R 20282386 intron cic + chr3R_5_20280001 chr3R_20280001 RAL-365 1212 chr3R 20330998 20331027 chr3R 20331484 20331513 roo 6 486 0.0 2.0 1.0 3.0 515 chr3R 20330998 intergenic Sirt2 + chr3R 20331256 intergenic Sirt2 + chr3R 20331513 intergenic not near genes chr3R_6_20330001 chr3R_20330001 RAL-365 1213 chr3R 20467094 20467112 chr3R 20467170 20467186 4 75 3.5 5.5 4.5 0.7 92 chr3R 20467094 intron Gfrl - chr3R 20467140 intron Gfrl - chr3R 20467186 intron Gfrl - chr3R_4_20465001 chr3R_20465001 RAL-365 1214 chr3R 20506585 20506616 chr3R 20507388 20507419 BS 7 803 0.5 1.5 1.0 3.5 834 chr3R 20506585 intergenic Or92a + chr3R 20507002 intergenic CG4288 - chr3R 20507419 3` UTR CG4288 - chr3R_7_20505001 chr3R_20505001 RAL-365 1215 chr3R 20684212 20684242 chr3R 20684296 20684326 4 84 1.0 2.5 1.8 1.4 114 chr3R 20684212 intergenic not near genes chr3R 20684269 intergenic not near genes chr3R 20684326 intergenic not near genes chr3R_4_20680001 chr3R_20680001 RAL-365 1216 chr3R 20703482 20703503 chr3R 20703876 20703897 5 394 2.5 0.0 1.2 2.3 415 chr3R 20703482 intron Oamb - chr3R 20703690 intron Oamb - chr3R 20703897 intron Oamb - chr3R_5_20700001 chr3R_20700001 RAL-365 1217 chr3R 20767498 20767536 chr3R 20767592 20767632 7 94 2.5 2.5 2.5 2.0 134 chr3R 20767498 intron Syp + chr3R 20767565 intron Syp + chr3R 20767632 intron Syp + chr3R_7_20765001 chr3R_20765001 RAL-365 1218 chr3R 20769582 20769604 chr3R 20769708 20769730 6 126 1.0 1.5 1.2 2.7 148 chr3R 20769582 intron Syp + chr3R 20769656 intron Syp + chr3R 20769730 intron Syp + chr3R_6_20765001 chr3R_20765001 RAL-365 1219 chr3R 20835302 20835312 chr3R 20835438 20835447 4 136 2.5 3.5 3.0 1.0 145 chr3R 20835302 exon Synd + chr3R 20835374 intron Synd + chr3R 20835447 intron Synd + chr3R_4_20835001 chr3R_20835001 RAL-365 1220 chr3R 20874521 20874549 chr3R 20874606 20874634 5 85 1.5 0.0 0.8 2.8 113 chr3R 20874521 3` UTR TotB + chr3R 20874578 intergenic TotB + chr3R 20874634 intergenic TotB + chr3R_5_20870001 chr3R_20870001 RAL-365 1221 chr3R 20990721 20990754 chr3R 20990803 20990836 7 82 2.0 0.5 1.2 3.2 115 chr3R 20990721 intron Calx + chr3R 20990778 intron Calx + chr3R 20990836 intron Calx + chr3R_7_20990001 chr3R_20990001 RAL-365 1222 chr3R 21041101 21041131 chr3R 21041253 21041284 5 152 2.0 0.5 1.2 2.3 183 chr3R 21041101 exon Dhc93AB - chr3R 21041192 intron Dhc93AB - chr3R 21041284 intron Dhc93AB - chr3R_5_21040001 chr3R_21040001 RAL-365 1223 chr3R 21154550 21154587 chr3R 21154755 21154800 8 214 2.5 0.0 1.2 3.6 250 chr3R 21154550 intron SNF4Agamma + chr3R 21154675 intron SNF4Agamma + chr3R 21154800 intron SNF4Agamma + chr3R_8_21150001 chr3R_21150001 RAL-365 1224 chr3R 21163248 21163273 chr3R 21163326 21163351 5 78 1.0 0.5 0.8 2.8 103 chr3R 21163248 intron SNF4Agamma + chr3R 21163300 intron SNF4Agamma + chr3R 21163351 intron SNF4Agamma + chr3R_5_21160001 chr3R_21160001 RAL-365 1225 chr3R 21330870 21330900 chr3R 21330961 21330991 8 91 0.5 0.0 0.2 6.7 121 chr3R 21330870 intron CG16791 - chr3R 21330930 intron CG16791 - chr3R 21330991 intron CG16791 - chr3R_8_21330001 chr3R_21330001 RAL-365 1226 chr3R 21383285 21383296 chr3R 21383365 21383375 5 80 0.0 0.5 0.2 4.2 90 chr3R 21383285 intergenic not near genes chr3R 21383330 intergenic not near genes chr3R 21383375 intergenic not near genes chr3R_5_21380001 chr3R_21380001 RAL-365 1227 chr3R 21519978 21520013 chr3R 21520079 21520114 5 101 1.5 1.0 1.2 2.3 136 chr3R 21519978 intergenic not near genes chr3R 21520046 intergenic not near genes chr3R 21520114 intergenic not near genes chr3R_5_21520001 chr3R_21520001 RAL-365 1228 chr3R 21554841 21554847 chr3R 21554935 21554941 4 94 4.0 1.5 2.8 1.1 100 chr3R 21554841 intron slou - chr3R 21554891 intron slou - chr3R 21554941 intron slou - chr3R_4_21550001 chr3R_21550001 RAL-365 1229 chr3R 21582996 21583007 chr3R 21583097 21583106 4 100 0.5 0.5 0.5 2.7 110 chr3R 21582996 intron InR - chr3R 21583051 intron InR - chr3R 21583106 intron InR - chr3R_4_21580001 chr3R_21580001 RAL-365 1230 chr3R 21586422 21586449 chr3R 21586504 21586533 9 83 1.5 1.5 1.5 3.6 111 chr3R 21586422 intron InR - chr3R 21586478 intron InR - chr3R 21586533 intron InR - chr3R_9_21585001 chr3R_21585001 RAL-365 1231 chr3R 21609003 21609039 chr3R 21611637 21611673 NOF 6 2634 0.5 0.0 0.2 5.0 2670 chr3R 21609003 intron InR - chr3R 21610338 intron InR - chr3R 21611673 intron InR - chr3R_6_21610001 chr3R_21610001 RAL-365 1232 chr3R 21652929 21652947 chr3R 21653006 21653024 4 77 1.0 2.0 1.5 1.6 95 chr3R 21652929 intron E2f - chr3R 21652976 intron E2f - chr3R 21653024 intron E2f - chr3R_4_21650001 chr3R_21650001 RAL-365 1233 chr3R 21761119 21761154 chr3R 21768511 21768546 mdg1 7 7392 2.5 1.5 2.0 2.3 7427 chr3R 21761119 exon CG42335 + chr3R 21764832 intron CG42335 + chr3R 21768546 exon CG42335 + chr3R_7_21760001 chr3R_21760001 RAL-365 1234 chr3R 8339246 8339246 chr3R 21907534 21907534 4 13568288 20.0 15.5 17.8 0.2 13568288 chr3R 8339246 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907534 intergenic CG6678 + chr3R_4_15120001 chr3R_15120001 RAL-365 1235 chr3R 17389054 17389054 chr3R 21907534 21907534 7 4518480 1.0 15.5 8.2 0.8 4518480 chr3R 17389054 intron,3` UTR Brf -,lute + chr3R 19648294 5` UTR CG6195 - chr3R 21907534 intergenic CG6678 + chr3R_7_19645001 chr3R_19645001 RAL-365 1236 chr3R 21337429 21337429 chr3R 21907534 21907534 4 570105 1.0 15.5 8.2 0.4 570105 chr3R 21337429 intron CG16791 - chr3R 21622482 intron E2f - chr3R 21907534 intergenic CG6678 + chr3R_4_21620001 chr3R_21620001 RAL-365 1237 chr3R 21907534 21907534 chr3R 24389465 24389465 5 2481931 18.5 6.5 12.5 0.4 2481931 chr3R 21907534 intergenic CG6678 + chr3R 23148500 intergenic not near genes chr3R 24389465 intron CG5768 - chr3R_5_23145001 chr3R_23145001 RAL-365 1238 chr3R 21907534 21907534 chr3R 28831799 28831804 22 6924268 18.5 13.0 15.8 1.3 6924270 chr3R 21907534 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831804 intron WASp - chr3R_22_25365001 chr3R_25365001 RAL-365 1239 chr3R 8339246 8339247 chr3R 21907535 21907535 10 13568288 20.0 15.5 17.8 0.5 13568289 chr3R 8339246 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907535 intergenic CG6678 + chr3R_10_15120001 chr3R_15120001 RAL-365 1240 chr3R 17389054 17389054 chr3R 21907535 21907535 5 4518481 1.0 15.5 8.2 0.5 4518481 chr3R 17389054 intron,3` UTR Brf -,lute + chr3R 19648294 5` UTR CG6195 - chr3R 21907535 intergenic CG6678 + chr3R_5_19645001 chr3R_19645001 RAL-365 1241 chr3R 19457915 19457915 chr3R 21907535 21907535 6 2449620 3.5 15.5 9.5 0.6 2449620 chr3R 19457915 3` UTR CG31221 + chr3R 20682725 intergenic not near genes chr3R 21907535 intergenic CG6678 + chr3R_6_20680001 chr3R_20680001 RAL-365 1242 chr3R 20177845 20177845 chr3R 21907535 21907535 5 1729690 4.0 15.5 9.8 0.5 1729690 chr3R 20177845 intergenic not near genes chr3R 21042690 intergenic Dhc93AB - chr3R 21907535 intergenic CG6678 + chr3R_5_21040001 chr3R_21040001 RAL-365 1243 chr3R 21337429 21337429 chr3R 21907535 21907535 4 570106 1.0 15.5 8.2 0.4 570106 chr3R 21337429 intron CG16791 - chr3R 21622482 intron E2f - chr3R 21907535 intergenic CG6678 + chr3R_4_21620001 chr3R_21620001 RAL-365 1244 chr3R 21907535 21907535 chr3R 28831801 28831803 56 6924266 19.5 13.0 16.2 3.3 6924268 chr3R 21907535 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831803 intron WASp - chr3R_56_25365001 chr3R_25365001 RAL-365 1245 chr3R 17389054 17389054 chr3R 21907536 21907536 4 4518482 1.0 16.0 8.5 0.4 4518482 chr3R 17389054 intron,3` UTR Brf -,lute + chr3R 19648295 5` UTR CG6195 - chr3R 21907536 intergenic CG6678 + chr3R_4_19645001 chr3R_19645001 RAL-365 1246 chr3R 19457915 19457917 chr3R 21907536 21907536 5 2449621 3.5 16.0 9.8 0.5 2449621 chr3R 19457915 3` UTR CG31221 + chr3R 20682726 intergenic not near genes chr3R 21907536 intergenic CG6678 + chr3R_5_20680001 chr3R_20680001 RAL-365 1247 chr3R 21907536 21907536 chr3R 28831801 28831802 54 6924266 19.5 13.0 16.2 3.1 6924266 chr3R 21907536 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831802 intron WASp - chr3R_54_25365001 chr3R_25365001 RAL-365 1248 chr3R 21907536 21907536 chr3R 29013339 29013340 8 7105804 19.5 10.5 15.0 0.5 7105804 chr3R 21907536 intergenic CG6678 + chr3R 25460438 intron Fur1 - chr3R 29013340 intron wat - chr3R_8_25460001 chr3R_25460001 RAL-365 1249 chr3R 21923482 21923493 chr3R 21923634 21923646 4 153 2.5 2.5 2.5 1.1 164 chr3R 21923482 intergenic not near genes chr3R 21923564 intergenic not near genes chr3R 21923646 intergenic not near genes chr3R_4_21920001 chr3R_21920001 RAL-365 1250 chr3R 21985240 21985258 chr3R 21985345 21985363 6 105 1.0 0.5 0.8 3.3 123 chr3R 21985240 intron Eip93F + chr3R 21985302 intron Eip93F + chr3R 21985363 intron Eip93F + chr3R_6_21985001 chr3R_21985001 RAL-365 1251 chr3R 22153585 22153601 chr3R 22153665 22153681 9 80 1.5 3.5 2.5 2.6 96 chr3R 22153585 intron SKIP + chr3R 22153633 intron SKIP + chr3R 22153681 intron SKIP + chr3R_9_22150001 chr3R_22150001 RAL-365 1252 chr3R 22234699 22234714 chr3R 22236017 22236033 pogo 6 1318 0.5 1.5 1.0 3.0 1334 chr3R 22234699 intron SKIP + chr3R 22235366 intron SKIP + chr3R 22236033 intron SKIP + chr3R_6_22235001 chr3R_22235001 RAL-365 1253 chr3R 22272349 22272370 chr3R 22272431 22272452 10 82 3.0 2.5 2.8 2.6 103 chr3R 22272349 intron SKIP + chr3R 22272400 intron SKIP + chr3R 22272452 intron SKIP + chr3R_10_22270001 chr3R_22270001 RAL-365 1254 chr3R 22311438 22311469 chr3R 22311519 22311550 9 81 1.5 2.5 2.0 3.0 112 chr3R 22311438 3` UTR CG34377 - chr3R 22311494 3` UTR CG34377 - chr3R 22311550 3` UTR CG34377 - chr3R_9_22310001 chr3R_22310001 RAL-365 1255 chr3R 22330614 22330636 chr3R 22332321 22332341 4 1706 22.0 10.5 16.2 0.2 1727 chr3R 22330614 intergenic CG7080 +,CG33721 + chr3R 22331478 exon CG33721 + chr3R 22332341 exon CG13862 + chr3R_4_22330001 chr3R_22330001 RAL-365 1256 chr3R 22450542 22450578 chr3R 22453182 22453212 NOF 6 2639 2.0 1.5 1.8 2.1 2670 chr3R 22450542 intron CG34376 + chr3R 22451877 intron CG34376 + chr3R 22453212 intron CG34376 + chr3R_6_22450001 chr3R_22450001 RAL-365 1257 chr3R 22538442 22538474 chr3R 22538527 22538559 9 85 2.0 0.5 1.2 4.1 117 chr3R 22538442 intron CG5326 - chr3R 22538500 intron CG5326 - chr3R 22538559 intron CG5326 - chr3R_9_22535001 chr3R_22535001 RAL-365 1258 chr3R 22580649 22580673 chr3R 22580732 22580756 7 83 0.5 2.5 1.5 2.8 107 chr3R 22580649 intergenic CSN6 +,CG33110 + chr3R 22580702 intergenic CSN6 +,CG33110 + chr3R 22580756 intergenic CSN6 +,CG33110 + chr3R_7_22580001 chr3R_22580001 RAL-365 1259 chr3R 22672302 22672333 chr3R 22672395 22672426 4 93 1.0 3.5 2.2 1.2 124 chr3R 22672302 intron wake + chr3R 22672364 intron wake + chr3R 22672426 intron wake + chr3R_4_22670001 chr3R_22670001 RAL-365 1260 chr3R 22684204 22684237 chr3R 22684280 22684313 8 76 0.0 1.0 0.5 5.3 109 chr3R 22684204 intergenic not near genes chr3R 22684258 intergenic not near genes chr3R 22684313 intergenic not near genes chr3R_8_22680001 chr3R_22680001 RAL-365 1261 chr3R 22769089 22769120 chr3R 22769166 22769197 9 77 2.0 1.0 1.5 3.6 108 chr3R 22769089 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769143 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769197 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R_9_22765001 chr3R_22765001 RAL-365 1262 chr3R 22797761 22797936 chr3R 22797847 22798032 11 91 0.0 0.0 0.0 11.0 271 chr3R 22797761 intergenic not near genes chr3R 22797896 intergenic not near genes chr3R 22798032 intergenic not near genes chr3R_11_22795001 chr3R_22795001 RAL-365 1263 chr3R 22803438 22803458 chr3R 22803629 22803648 11 191 1.5 3.0 2.2 3.4 210 chr3R 22803438 intergenic not near genes chr3R 22803543 intergenic not near genes chr3R 22803648 intergenic not near genes chr3R_11_22800001 chr3R_22800001 RAL-365 1264 chr3R 22863919 22863930 chr3R 22863997 22864008 5 78 1.5 2.5 2.0 1.7 89 chr3R 22863919 intergenic not near genes chr3R 22863964 intergenic not near genes chr3R 22864008 intergenic not near genes chr3R_5_22860001 chr3R_22860001 RAL-365 1265 chr3R 22889016 22889044 chr3R 22889093 22889121 5 77 2.5 2.5 2.5 1.4 105 chr3R 22889016 intergenic not near genes chr3R 22889068 intergenic not near genes chr3R 22889121 intergenic not near genes chr3R_5_22885001 chr3R_22885001 RAL-365 1266 chr3R 22974288 22974310 chr3R 22974372 22974394 7 84 0.5 2.0 1.2 3.2 106 chr3R 22974288 intergenic not near genes chr3R 22974341 intergenic not near genes chr3R 22974394 intergenic not near genes chr3R_7_22970001 chr3R_22970001 RAL-365 1267 chr3R 23064172 23064205 chr3R 23064281 23064312 8 108 2.5 1.5 2.0 2.7 140 chr3R 23064172 exon CG17111 - chr3R 23064242 intron CG17111 - chr3R 23064312 exon CG17111 - chr3R_8_23060001 chr3R_23060001 RAL-365 1268 chr3R 23064894 23064900 chr3R 23064984 23064991 6 91 0.0 3.0 1.5 2.4 97 chr3R 23064894 intron CG17111 - chr3R 23064942 intron CG17111 - chr3R 23064991 intron CG17111 - chr3R_6_23060001 chr3R_23060001 RAL-365 1269 chr3R 23073654 23073685 chr3R 23073743 23073774 8 89 3.0 1.0 2.0 2.7 120 chr3R 23073654 intron CG13830 - chr3R 23073714 intron CG13830 - chr3R 23073774 intron CG13830 - chr3R_8_23070001 chr3R_23070001 RAL-365 1270 chr3R 23079058 23079077 chr3R 23079177 23079197 6 120 2.0 2.0 2.0 2.0 139 chr3R 23079058 intron CG13830 - chr3R 23079128 intron CG13830 - chr3R 23079197 intron CG13830 - chr3R_6_23075001 chr3R_23075001 RAL-365 1271 chr3R 23086108 23086134 chr3R 23086239 23086265 4 128 1.5 1.0 1.2 1.8 157 chr3R 23086108 intron CG13830 - chr3R 23086186 intron CG13830 - chr3R 23086265 intron CG13830 - chr3R_4_23085001 chr3R_23085001 RAL-365 1272 chr3R 23100153 23100434 chr3R 23100240 23100515 10 85 5.0 1.0 3.0 2.5 362 chr3R 23100153 intron,exon CG13830 -,CG6738 + chr3R 23100334 intron,exon CG13830 -,CG6738 + chr3R 23100515 intron,exon CG13830 -,CG6738 + chr3R_10_23100001 chr3R_23100001 RAL-365 1273 chr3R 23113798 23113819 chr3R 23113875 23113896 6 77 0.0 1.0 0.5 4.0 98 chr3R 23113798 intergenic Rassf - chr3R 23113847 intergenic Rassf - chr3R 23113896 intergenic Rassf - chr3R_6_23110001 chr3R_23110001 RAL-365 1274 chr3R 23424782 23424811 chr3R 23424974 23425002 6 191 0.5 4.0 2.2 1.9 220 chr3R 23424782 intron CG4374 - chr3R 23424892 intron CG4374 - chr3R 23425002 intron CG4374 - chr3R_6_23420001 chr3R_23420001 RAL-365 1275 chr3R 23431070 23431102 chr3R 23431146 23431178 7 73 2.0 3.0 2.5 2.0 108 chr3R 23431070 intron CG4374 - chr3R 23431124 intron CG4374 - chr3R 23431178 intron CG4374 - chr3R_7_23430001 chr3R_23430001 RAL-365 1276 chr3R 23441350 23441375 chr3R 23441428 23441452 4 78 3.5 2.0 2.8 1.1 102 chr3R 23441350 intron CG4374 - chr3R 23441401 intron CG4374 - chr3R 23441452 intron CG4374 - chr3R_4_23440001 chr3R_23440001 RAL-365 1277 chr3R 23497960 23497972 chr3R 23498044 23498056 4 84 2.5 3.5 3.0 1.0 96 chr3R 23497960 intergenic not near genes chr3R 23498008 intergenic not near genes chr3R 23498056 intergenic not near genes chr3R_4_23495001 chr3R_23495001 RAL-365 1278 chr3R 23543324 23543338 chr3R 23543400 23543415 5 77 0.0 2.5 1.2 2.3 91 chr3R 23543324 intergenic not near genes chr3R 23543370 intergenic not near genes chr3R 23543415 intergenic not near genes chr3R_5_23540001 chr3R_23540001 RAL-365 1279 chr3R 23549158 23549179 chr3R 23549260 23549284 6 104 1.0 4.0 2.5 1.7 126 chr3R 23549158 intergenic not near genes chr3R 23549221 intergenic not near genes chr3R 23549284 intergenic not near genes chr3R_6_23545001 chr3R_23545001 RAL-365 1280 chr3R 23556307 23556337 chr3R 23556409 23556440 8 103 2.0 3.5 2.8 2.1 133 chr3R 23556307 5` UTR CG10164 - chr3R 23556374 5` UTR CG10164 - chr3R 23556440 5` UTR CG10164 - chr3R_8_23555001 chr3R_23555001 RAL-365 1281 chr3R 23586205 23586211 chr3R 23586286 23586292 4 80 0.5 0.0 0.2 3.3 87 chr3R 23586205 intergenic not near genes chr3R 23586248 intergenic not near genes chr3R 23586292 intergenic not near genes chr3R_4_23585001 chr3R_23585001 RAL-365 1282 chr3R 23640076 23640093 chr3R 23640157 23640174 9 81 0.0 2.0 1.0 4.5 98 chr3R 23640076 intron CG31145 - chr3R 23640125 intron CG31145 - chr3R 23640174 intron CG31145 - chr3R_9_23640001 chr3R_23640001 RAL-365 1283 chr3R 23684707 23684729 chr3R 23685193 23685214 roo 6 486 1.5 5.5 3.5 1.3 507 chr3R 23684707 intron CG18754 + chr3R 23684960 intron CG18754 + chr3R 23685214 exon CG18754 + chr3R_6_23680001 chr3R_23680001 RAL-365 1284 chr3R 23944911 23944934 chr3R 23944996 23945019 5 85 2.0 2.5 2.2 1.6 108 chr3R 23944911 intron CG12268 - chr3R 23944965 intron CG12268 - chr3R 23945019 exon CG12268 - chr3R_5_23940001 chr3R_23940001 RAL-365 1285 chr3R 23949041 23949074 chr3R 23949118 23949151 6 77 2.0 2.5 2.2 1.9 110 chr3R 23949041 intergenic not near genes chr3R 23949096 intergenic not near genes chr3R 23949151 intergenic not near genes chr3R_6_23945001 chr3R_23945001 RAL-365 1286 chr3R 24072086 24072095 chr3R 24072524 24072533 jockey 4 438 7.5 4.0 5.8 0.6 447 chr3R 24072086 intron 4EHP - chr3R 24072310 intron 4EHP - chr3R 24072533 intron 4EHP - chr3R_4_24070001 chr3R_24070001 RAL-365 1287 chr3R 24072097 24072116 chr3R 24072522 24072552 jockey 7 436 4.0 3.5 3.8 1.5 455 chr3R 24072097 intron 4EHP - chr3R 24072324 intron 4EHP - chr3R 24072552 intron 4EHP - chr3R_7_24070001 chr3R_24070001 RAL-365 1288 chr3R 24076917 24076948 chr3R 24078384 24078415 hobo 7 1467 0.0 2.0 1.0 3.5 1498 chr3R 24076917 intron 4EHP - chr3R 24077666 intron 4EHP - chr3R 24078415 intron 4EHP - chr3R_7_24075001 chr3R_24075001 RAL-365 1289 chr3R 24204776 24204799 chr3R 24204859 24204881 7 83 2.5 4.0 3.2 1.7 105 chr3R 24204776 intron twin - chr3R 24204828 intron twin - chr3R 24204881 intron twin - chr3R_7_24200001 chr3R_24200001 RAL-365 1290 chr3R 21907535 21907535 chr3R 24389465 24389465 5 2481930 19.5 6.5 13.0 0.4 2481930 chr3R 21907535 intergenic CG6678 + chr3R 23148500 intergenic not near genes chr3R 24389465 intron CG5768 - chr3R_5_23145001 chr3R_23145001 RAL-365 1291 chr3R 24431599 24431615 chr3R 24431678 24431694 5 79 3.5 0.0 1.8 1.8 95 chr3R 24431599 intron nAChRalpha1 - chr3R 24431646 intron nAChRalpha1 - chr3R 24431694 intron nAChRalpha1 - chr3R_5_24430001 chr3R_24430001 RAL-365 1292 chr3R 24441622 24441634 chr3R 24441904 24441916 5 281 5.5 1.5 3.5 1.1 294 chr3R 24441622 intron nAChRalpha1 - chr3R 24441769 intron nAChRalpha1 - chr3R 24441916 intron nAChRalpha1 - chr3R_5_24440001 chr3R_24440001 RAL-365 1293 chr3R 24466469 24466497 chr3R 24466547 24466575 5 78 0.5 3.0 1.8 1.8 106 chr3R 24466469 intergenic not near genes chr3R 24466522 intergenic not near genes chr3R 24466575 intergenic not near genes chr3R_5_24465001 chr3R_24465001 RAL-365 1294 chr3R 24493277 24493310 chr3R 24493506 24493539 BS 6 229 1.5 1.5 1.5 2.4 262 chr3R 24493277 intergenic not near genes chr3R 24493408 intergenic not near genes chr3R 24493539 intergenic not near genes chr3R_6_24490001 chr3R_24490001 RAL-365 1295 chr3R 24527801 24527834 chr3R 24527892 24527925 4 91 0.5 0.5 0.5 2.7 124 chr3R 24527801 intergenic CG6607 +,CG13618 + chr3R 24527863 intergenic CG6607 +,CG13618 + chr3R 24527925 intergenic CG6607 +,CG13618 + chr3R_4_24525001 chr3R_24525001 RAL-365 1296 chr3R 24789963 24789989 chr3R 24790103 24790129 6 140 1.0 2.0 1.5 2.4 166 chr3R 24789963 intron,5` UTR Ets96B +,CG13634 - chr3R 24790046 intron,5` UTR Ets96B +,CG13634 - chr3R 24790129 intron,5` UTR Ets96B +,CG13634 - chr3R_6_24790001 chr3R_24790001 RAL-365 1297 chr3R 24790682 24790712 chr3R 24790763 24790794 11 81 2.0 2.5 2.2 3.4 112 chr3R 24790682 intron Ets96B + chr3R 24790738 intron Ets96B + chr3R 24790794 intron Ets96B + chr3R_11_24790001 chr3R_24790001 RAL-365 1298 chr3R 24927121 24927150 chr3R 24931912 24931941 Doc 5 4791 3.5 2.0 2.8 1.3 4820 chr3R 24927121 intergenic Trf4-2 + chr3R 24929531 intergenic not near genes chr3R 24931941 intergenic CG11771 + chr3R_5_24925001 chr3R_24925001 RAL-365 1299 chr3R 24974912 24974936 chr3R 24974991 24975015 5 79 3.0 3.0 3.0 1.2 103 chr3R 24974912 intergenic not near genes chr3R 24974964 intergenic not near genes chr3R 24975015 intergenic not near genes chr3R_5_24970001 chr3R_24970001 RAL-365 1300 chr3R 25004899 25004921 chr3R 25004982 25005004 7 83 0.0 2.5 1.2 3.2 105 chr3R 25004899 intron tnc + chr3R 25004952 intron tnc + chr3R 25005004 intron tnc + chr3R_7_25000001 chr3R_25000001 RAL-365 1301 chr3R 25064989 25065017 chr3R 25065071 25065098 8 82 1.5 2.0 1.8 2.9 109 chr3R 25064989 exon veli - chr3R 25065044 intron veli - chr3R 25065098 intron veli - chr3R_8_25065001 chr3R_25065001 RAL-365 1302 chr3R 25072762 25072788 chr3R 25072854 25072880 4 92 2.0 2.0 2.0 1.3 118 chr3R 25072762 3` UTR CG9996 - chr3R 25072821 3` UTR CG9996 - chr3R 25072880 3` UTR CG9996 - chr3R_4_25070001 chr3R_25070001 RAL-365 1303 chr3R 25159725 25159754 chr3R 25159804 25159833 5 79 1.0 4.0 2.5 1.4 108 chr3R 25159725 intergenic not near genes chr3R 25159779 intergenic not near genes chr3R 25159833 intergenic not near genes chr3R_5_25155001 chr3R_25155001 RAL-365 1304 chr3R 25241796 25241825 chr3R 25241883 25241900 5 83 1.5 4.5 3.0 1.2 104 chr3R 25241796 intergenic to +,CG11854 + chr3R 25241848 intergenic CG11854 +,to + chr3R 25241900 intergenic CG11854 +,to + chr3R_5_25240001 chr3R_25240001 RAL-365 1305 chr3R 25447121 25447138 chr3R 25447198 25447215 5 77 2.5 2.5 2.5 1.4 94 chr3R 25447121 intron Fur1 - chr3R 25447168 intron Fur1 - chr3R 25447215 intron Fur1 - chr3R_5_25445001 chr3R_25445001 RAL-365 1306 chr3R 25602023 25602048 chr3R 25602114 25602139 5 91 1.5 1.5 1.5 2.0 116 chr3R 25602023 3` UTR,intron msi +,ymp - chr3R 25602081 3` UTR,intron msi +,ymp - chr3R 25602139 3` UTR,intron msi +,ymp - chr3R_5_25600001 chr3R_25600001 RAL-365 1307 chr3R 25621064 25621077 chr3R 25621140 25621153 5 76 0.5 3.0 1.8 1.8 89 chr3R 25621064 intron Npl4 - chr3R 25621108 intron Npl4 - chr3R 25621153 intron Npl4 - chr3R_5_25620001 chr3R_25620001 RAL-365 1308 chr3R 25621775 25621811 chr3R 25621859 25621895 7 84 2.0 0.0 1.0 3.5 120 chr3R 25621775 intron Npl4 - chr3R 25621835 intron Npl4 - chr3R 25621895 exon Npl4 - chr3R_7_25620001 chr3R_25620001 RAL-365 1309 chr3R 25832694 25832719 chr3R 25841876 25841901 roo 9 9182 2.5 2.5 2.5 2.6 9207 chr3R 25832694 exon alpha4GT2 + chr3R 25837298 intron alpha4GT2 + chr3R 25841901 exon alpha4GT2 + chr3R_9_25835001 chr3R_25835001 RAL-365 1310 chr3R 25843637 25843666 chr3R 25843767 25843795 4 130 0.5 1.5 1.0 2.0 158 chr3R 25843637 intergenic CR45653 + chr3R 25843716 intergenic CR45653 + chr3R 25843795 intergenic CR45653 + chr3R_4_25840001 chr3R_25840001 RAL-365 1311 chr3R 25869213 25869240 chr3R 25869407 25869433 4 194 1.0 0.5 0.8 2.2 220 chr3R 25869213 intron CG5890 + chr3R 25869323 intron CG5890 + chr3R 25869433 intron CG5890 + chr3R_4_25865001 chr3R_25865001 RAL-365 1312 chr3R 25983698 25983713 chr3R 25983795 25983811 7 98 2.0 1.5 1.8 2.5 113 chr3R 25983698 exon Nf1 + chr3R 25983754 intron Nf1 + chr3R 25983811 intron Nf1 + chr3R_7_25980001 chr3R_25980001 RAL-365 1313 chr3R 26060403 26060434 chr3R 26060489 26060520 9 86 3.5 2.0 2.8 2.4 117 chr3R 26060403 intron CG14544 + chr3R 26060462 intron CG14544 + chr3R 26060520 intron CG14544 + chr3R_9_26060001 chr3R_26060001 RAL-365 1314 chr3R 26093848 26093873 chr3R 26093926 26093951 6 78 1.5 2.0 1.8 2.1 103 chr3R 26093848 intron dys - chr3R 26093900 intron dys - chr3R 26093951 intron dys - chr3R_6_26090001 chr3R_26090001 RAL-365 1315 chr3R 26121967 26121980 chr3R 26122064 26122077 6 97 0.0 3.0 1.5 2.4 110 chr3R 26121967 intron CG31324 + chr3R 26122022 intron CG31324 + chr3R 26122077 intron CG31324 + chr3R_6_26120001 chr3R_26120001 RAL-365 1316 chr3R 26122467 26122479 chr3R 26122543 26122555 4 76 1.0 4.0 2.5 1.1 88 chr3R 26122467 intron CG31324 + chr3R 26122511 intron CG31324 + chr3R 26122555 intron CG31324 + chr3R_4_26120001 chr3R_26120001 RAL-365 1317 chr3R 26126267 26126291 chr3R 26126372 26126394 9 105 1.5 0.5 1.0 4.5 127 chr3R 26126267 intron CG31324 + chr3R 26126330 intron CG31324 + chr3R 26126394 intron CG31324 + chr3R_9_26125001 chr3R_26125001 RAL-365 1318 chr3R 26166177 26166205 chr3R 26166263 26166291 6 86 1.0 2.5 1.8 2.1 114 chr3R 26166177 intergenic not near genes chr3R 26166234 intergenic not near genes chr3R 26166291 intergenic not near genes chr3R_6_26165001 chr3R_26165001 RAL-365 1319 chr3R 26265820 26265846 chr3R 26265908 26265934 7 87 1.5 4.0 2.8 1.8 114 chr3R 26265820 intron CG6154 + chr3R 26265877 intron CG6154 + chr3R 26265934 intron CG6154 + chr3R_7_26265001 chr3R_26265001 RAL-365 1320 chr3R 26294722 26294747 chr3R 26294800 26294825 4 78 1.5 1.5 1.5 1.6 103 chr3R 26294722 intergenic not near genes chr3R 26294774 intergenic not near genes chr3R 26294825 intergenic not near genes chr3R_4_26290001 chr3R_26290001 RAL-365 1321 chr3R 26334574 26334598 chr3R 26334699 26334722 8 125 3.0 1.0 2.0 2.7 148 chr3R 26334574 intron CG33970 + chr3R 26334648 intron CG33970 + chr3R 26334722 intron CG33970 + chr3R_8_26330001 chr3R_26330001 RAL-365 1322 chr3R 26376324 26376340 chr3R 26385484 26385500 roo 5 9160 4.0 0.0 2.0 1.7 9176 chr3R 26376324 intergenic not near genes chr3R 26380912 intergenic not near genes chr3R 26385500 intergenic not near genes chr3R_5_26380001 chr3R_26380001 RAL-365 1323 chr3R 26506664 26506686 chr3R 26506745 26506767 10 81 1.0 2.5 1.8 3.6 103 chr3R 26506664 intron plum - chr3R 26506716 intron plum - chr3R 26506767 intron plum - chr3R_10_26505001 chr3R_26505001 RAL-365 1324 chr3R 26558328 26558360 chr3R 26565639 26565672 Stalker4 9 7312 1.5 1.0 1.2 4.1 7344 chr3R 26558328 intron scrib + chr3R 26562000 intron scrib + chr3R 26565672 intron scrib + chr3R_9_26560001 chr3R_26560001 RAL-365 1325 chr3R 26577500 26577532 chr3R 26577576 26577608 6 76 2.5 2.0 2.2 1.9 108 chr3R 26577500 intron scrib + chr3R 26577554 intron scrib + chr3R 26577608 intron scrib + chr3R_6_26575001 chr3R_26575001 RAL-365 1326 chr3R 26642748 26642760 chr3R 26643142 26643154 jockey 6 394 3.0 5.5 4.2 1.2 406 chr3R 26642748 intergenic not near genes chr3R 26642951 intergenic not near genes chr3R 26643154 intergenic not near genes chr3R_6_26640001 chr3R_26640001 RAL-365 1327 chr3R 26770241 26770273 chr3R 26770318 26770350 8 77 1.0 1.0 1.0 4.0 109 chr3R 26770241 intergenic CR45563 + chr3R 26770296 intergenic CR45563 + chr3R 26770350 intergenic not near genes chr3R_8_26770001 chr3R_26770001 RAL-365 1328 chr3R 26798084 26798114 chr3R 26798164 26798193 8 80 1.5 2.5 2.0 2.7 109 chr3R 26798084 intergenic not near genes chr3R 26798138 intergenic not near genes chr3R 26798193 intergenic not near genes chr3R_8_26795001 chr3R_26795001 RAL-365 1329 chr3R 27007404 27007427 chr3R 27016539 27016561 roo 5 9135 1.0 2.0 1.5 2.0 9157 chr3R 27007404 intron RYa-R + chr3R 27011982 intron RYa-R + chr3R 27016561 intron RYa-R + chr3R_5_27010001 chr3R_27010001 RAL-365 1330 chr3R 27028730 27028755 chr3R 27028808 27028834 4 79 0.5 1.0 0.8 2.2 104 chr3R 27028730 intron RYa-R + chr3R 27028782 intron RYa-R + chr3R 27028834 intron RYa-R + chr3R_4_27025001 chr3R_27025001 RAL-365 1331 chr3R 27140513 27140548 chr3R 27148123 27148158 412 7 7610 0.5 1.0 0.8 3.9 7645 chr3R 27140513 intron CG6051 - chr3R 27144336 intron CG6051 - chr3R 27148158 intron CG6051 - chr3R_7_27140001 chr3R_27140001 RAL-365 1332 chr3R 27334663 27334681 chr3R 27334749 27334767 8 86 2.5 2.0 2.2 2.5 104 chr3R 27334663 intergenic not near genes chr3R 27334715 intergenic not near genes chr3R 27334767 intergenic not near genes chr3R_8_27330001 chr3R_27330001 RAL-365 1333 chr3R 27342793 27342825 chr3R 27351374 27351405 Tirant 6 8581 2.0 0.5 1.2 2.7 8612 chr3R 27342793 intron CG42534 + chr3R 27347099 intron CG42534 + chr3R 27351405 intron CG42534 + chr3R_6_27345001 chr3R_27345001 RAL-365 1334 chr3R 27492384 27492409 chr3R 27492471 27492496 5 87 1.0 2.0 1.5 2.0 112 chr3R 27492384 intergenic not near genes chr3R 27492440 intergenic not near genes chr3R 27492496 intergenic not near genes chr3R_5_27490001 chr3R_27490001 RAL-365 1335 chr3R 27627085 27627118 chr3R 27627187 27627220 9 102 2.5 2.0 2.2 2.8 135 chr3R 27627085 intron Tusp + chr3R 27627152 intron Tusp + chr3R 27627220 intron Tusp + chr3R_9_27625001 chr3R_27625001 RAL-365 1336 chr3R 27648590 27648869 chr3R 27648673 27648946 10 79 2.0 0.0 1.0 5.0 356 chr3R 27648590 intron tau - chr3R 27648768 intron tau - chr3R 27648946 intron tau - chr3R_10_27645001 chr3R_27645001 RAL-365 1337 chr3R 27706776 27706808 chr3R 27706853 27706885 6 77 1.5 0.5 1.0 3.0 109 chr3R 27706776 intergenic CG12428 -,CG12877 + chr3R 27706830 intergenic CG12428 -,CG12877 + chr3R 27706885 intergenic CG12428 -,CG12877 + chr3R_6_27705001 chr3R_27705001 RAL-365 1338 chr3R 27853215 27853234 chr3R 27853409 27853429 6 194 1.0 2.5 1.8 2.1 214 chr3R 27853215 intron CG34353 - chr3R 27853322 intron CG34353 - chr3R 27853429 intron CG34353 - chr3R_6_27850001 chr3R_27850001 RAL-365 1339 chr3R 27856758 27856791 chr3R 27858241 27858274 hopper2 7 1483 1.0 2.5 1.8 2.5 1516 chr3R 27856758 intron CG34353 - chr3R 27857516 intron CG34353 - chr3R 27858274 intron CG34353 - chr3R_7_27855001 chr3R_27855001 RAL-365 1340 chr3R 27862953 27862983 chr3R 27868258 27868288 Transpac 9 5305 1.0 0.5 0.8 5.0 5335 chr3R 27862953 intron CG34353 - chr3R 27865620 intron CG34353 - chr3R 27868288 intron CG34353 - chr3R_9_27865001 chr3R_27865001 RAL-365 1341 chr3R 27875698 27875730 chr3R 27882753 27882785 297 8 7055 1.5 1.0 1.2 3.6 7087 chr3R 27875698 intron CG34353 - chr3R 27879242 intron CG34353 - chr3R 27882785 intron CG34353 - chr3R_8_27875001 chr3R_27875001 RAL-365 1342 chr3R 28017952 28017981 chr3R 28018043 28018072 4 90 1.5 1.5 1.5 1.6 120 chr3R 28017952 intergenic not near genes chr3R 28018012 intergenic not near genes chr3R 28018072 intergenic not near genes chr3R_4_28015001 chr3R_28015001 RAL-365 1343 chr3R 28068494 28068526 chr3R 28073936 28073967 I-element 6 5442 3.0 2.0 2.5 1.7 5473 chr3R 28068494 intron CG34362 + chr3R 28071230 intron CG34362 + chr3R 28073967 intron CG34362 + chr3R_6_28070001 chr3R_28070001 RAL-365 1344 chr3R 28115511 28115530 chr3R 28115587 28115606 7 76 3.5 4.0 3.8 1.5 95 chr3R 28115511 intergenic not near genes chr3R 28115558 intergenic not near genes chr3R 28115606 intergenic not near genes chr3R_7_28115001 chr3R_28115001 RAL-365 1345 chr3R 28172970 28172993 chr3R 28173126 28173150 5 156 1.5 1.0 1.2 2.3 180 chr3R 28172970 intron CG34354 + chr3R 28173060 intron CG34354 + chr3R 28173150 intron CG34354 + chr3R_5_28170001 chr3R_28170001 RAL-365 1346 chr3R 28242447 28242455 chr3R 28242525 28242534 4 79 1.0 0.0 0.5 2.7 87 chr3R 28242447 intergenic not near genes chr3R 28242490 intergenic not near genes chr3R 28242534 intergenic not near genes chr3R_4_28240001 chr3R_28240001 RAL-365 1347 chr3R 28253340 28253366 chr3R 28255850 28255876 jockey 8 2510 2.0 3.0 2.5 2.3 2536 chr3R 28253340 intergenic not near genes chr3R 28254608 intergenic not near genes chr3R 28255876 intergenic not near genes chr3R_8_28250001 chr3R_28250001 RAL-365 1348 chr3R 28302107 28302112 chr3R 28302549 28302554 jockey 4 442 3.0 3.0 3.0 1.0 447 chr3R 28302107 intergenic not near genes chr3R 28302330 intergenic not near genes chr3R 28302554 intergenic not near genes chr3R_4_28300001 chr3R_28300001 RAL-365 1349 chr3R 28331513 28331527 chr3R 28331592 28331606 4 79 1.0 2.5 1.8 1.4 93 chr3R 28331513 intron larp - chr3R 28331560 intron larp - chr3R 28331606 intron larp - chr3R_4_28330001 chr3R_28330001 RAL-365 1350 chr3R 28478426 28478445 chr3R 28478503 28478526 4 79 2.0 1.5 1.8 1.4 100 chr3R 28478426 intergenic not near genes chr3R 28478476 intergenic not near genes chr3R 28478526 intergenic not near genes chr3R_4_28475001 chr3R_28475001 RAL-365 1351 chr3R 28479149 28479164 chr3R 28479231 28479247 4 82 1.0 2.0 1.5 1.6 98 chr3R 28479149 intergenic not near genes chr3R 28479198 intergenic not near genes chr3R 28479247 intergenic not near genes chr3R_4_28475001 chr3R_28475001 RAL-365 1352 chr3R 28484353 28484374 chr3R 28486270 28486291 33 1917 33.0 63.0 48.0 0.7 1938 chr3R 28484353 intergenic CG1894 + chr3R 28485322 exon CG1894 + chr3R 28486291 intergenic CG1894 + chr3R_33_28485001 chr3R_28485001 RAL-365 1353 chr3R 28599833 28599852 chr3R 28599936 28599955 6 103 0.5 2.5 1.5 2.4 122 chr3R 28599833 intergenic not near genes chr3R 28599894 intergenic not near genes chr3R 28599955 intergenic Hrb98DE + chr3R_6_28595001 chr3R_28595001 RAL-365 1354 chr3R 28616191 28616476 chr3R 28616275 28616570 11 87 4.5 1.5 3.0 2.8 379 chr3R 28616191 intron CG10011 - chr3R 28616380 intron CG10011 - chr3R 28616570 intron CG10011 - chr3R_11_28615001 chr3R_28615001 RAL-365 1355 chr3R 28616483 28616502 chr3R 28616577 28616596 4 94 2.0 3.5 2.8 1.1 113 chr3R 28616483 intron CG10011 - chr3R 28616540 intron CG10011 - chr3R 28616596 intron CG10011 - chr3R_4_28615001 chr3R_28615001 RAL-365 1356 chr3R 28662702 28662736 chr3R 28662792 28662826 7 90 1.5 2.5 2.0 2.3 124 chr3R 28662702 intergenic not near genes chr3R 28662764 intergenic not near genes chr3R 28662826 intergenic not near genes chr3R_7_28660001 chr3R_28660001 RAL-365 1357 chr3R 28687090 28687125 chr3R 28687169 28687203 5 79 3.0 3.5 3.2 1.2 113 chr3R 28687090 intron CG9990 + chr3R 28687146 intron CG9990 + chr3R 28687203 intron CG9990 + chr3R_5_28685001 chr3R_28685001 RAL-365 1358 chr3R 28741501 28741519 chr3R 28741636 28741655 5 136 2.5 3.0 2.8 1.3 154 chr3R 28741501 intron AstA-R2 - chr3R 28741578 intron AstA-R2 - chr3R 28741655 intron AstA-R2 - chr3R_5_28740001 chr3R_28740001 RAL-365 1359 chr3R 28792878 28792902 chr3R 28797972 28797997 jockey 7 5095 0.5 1.0 0.8 3.9 5119 chr3R 28792878 intergenic not near genes chr3R 28795438 intergenic not near genes chr3R 28797997 intergenic not near genes chr3R_7_28795001 chr3R_28795001 RAL-365 1360 chr3R 21907534 21907536 chr3R 28831799 28831801 47 6924266 19.5 13.0 16.2 2.7 6924267 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831801 intron WASp - chr3R_47_25365001 chr3R_25365001 RAL-365 1361 chr3R 21907534 21907536 chr3R 28831802 28831802 33 6924267 19.5 13.5 16.5 1.9 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_33_25365001 chr3R_25365001 RAL-365 1362 chr3R 28843073 28843095 chr3R 28843188 28843210 5 115 1.5 1.5 1.5 2.0 137 chr3R 28843073 intron Apc - chr3R 28843142 intron Apc - chr3R 28843210 intron Apc - chr3R_5_28840001 chr3R_28840001 RAL-365 1363 chr3R 28938492 28938523 chr3R 28938594 28938622 6 100 4.5 0.0 2.2 1.9 130 chr3R 28938492 intron CG14521 - chr3R 28938557 intron CG14521 - chr3R 28938622 intron CG14521 - chr3R_6_28935001 chr3R_28935001 RAL-365 1364 chr3R 29009964 29009986 chr3R 29010070 29010092 6 106 0.0 1.5 0.8 3.3 128 chr3R 29009964 intron wat - chr3R 29010028 intron wat - chr3R 29010092 intron wat - chr3R_6_29010001 chr3R_29010001 RAL-365 1365 chr3R 29011289 29011312 chr3R 29011512 29011531 6 222 1.5 3.0 2.2 1.9 242 chr3R 29011289 intron wat - chr3R 29011410 intron wat - chr3R 29011531 intron wat - chr3R_6_29010001 chr3R_29010001 RAL-365 1366 chr3R 21907534 21907536 chr3R 29013340 29013340 9 7105805 19.5 10.5 15.0 0.6 7105806 chr3R 21907534 intergenic CG6678 + chr3R 25460437 intron Fur1 - chr3R 29013340 intron wat - chr3R_9_25460001 chr3R_25460001 RAL-365 1367 chr3R 29070066 29070071 chr3R 29070147 29070152 4 81 1.5 3.5 2.5 1.1 86 chr3R 29070066 intron CG11873 + chr3R 29070109 intron CG11873 + chr3R 29070152 intron CG11873 + chr3R_4_29070001 chr3R_29070001 RAL-365 1368 chr3R 29079386 29079410 chr3R 29080758 29080782 NOF 6 1372 2.0 4.5 3.2 1.4 1396 chr3R 29079386 intron CG11873 + chr3R 29080084 intron CG11873 + chr3R 29080782 intron CG11873 + chr3R_6_29080001 chr3R_29080001 RAL-365 1369 chr3R 29239229 29239250 chr3R 29245518 29245539 5 6290 3.5 8.5 6.0 0.7 6310 chr3R 29239229 exon CG31427 - chr3R 29242384 exon CG31445 - chr3R 29245539 exon SP1029 - chr3R_5_29240001 chr3R_29240001 RAL-365 1370 chr3R 29292059 29292071 chr3R 29292136 29292152 4 80 3.5 3.0 3.2 1.0 93 chr3R 29292059 intergenic not near genes chr3R 29292106 intergenic not near genes chr3R 29292152 intergenic not near genes chr3R_4_29290001 chr3R_29290001 RAL-365 1371 chr3R 29319844 29319858 chr3R 29320163 29320177 jockey 4 319 0.0 1.5 0.8 2.2 333 chr3R 29319844 intergenic Cnx99A - chr3R 29320010 intergenic Cnx99A - chr3R 29320177 intergenic not near genes chr3R_4_29320001 chr3R_29320001 RAL-365 1372 chr3R 29406613 29406635 chr3R 29407898 29407920 jockey 5 1286 3.0 1.5 2.2 1.6 1307 chr3R 29406613 intron Ptp99A + chr3R 29407266 intron Ptp99A + chr3R 29407920 intron Ptp99A + chr3R_5_29405001 chr3R_29405001 RAL-365 1373 chr3R 29432777 29432799 chr3R 29432854 29432876 5 75 1.5 3.0 2.2 1.6 99 chr3R 29432777 intron Ptp99A + chr3R 29432826 intron Ptp99A + chr3R 29432876 intron Ptp99A + chr3R_5_29430001 chr3R_29430001 RAL-365 1374 chr3R 29472011 29472038 chr3R 29472104 29472131 4 92 0.5 1.5 1.0 2.0 120 chr3R 29472011 intron Ptp99A + chr3R 29472071 intron Ptp99A + chr3R 29472131 intron Ptp99A + chr3R_4_29470001 chr3R_29470001 RAL-365 1375 chr3R 29539440 29539459 chr3R 29539516 29539535 5 76 2.5 0.0 1.2 2.3 95 chr3R 29539440 intergenic not near genes chr3R 29539488 intergenic not near genes chr3R 29539535 intergenic not near genes chr3R_5_29535001 chr3R_29535001 RAL-365 1376 chr3R 29573052 29573079 chr3R 29573240 29573266 8 188 1.5 2.0 1.8 2.9 214 chr3R 29573052 intergenic not near genes chr3R 29573159 intergenic not near genes chr3R 29573266 intergenic not near genes chr3R_8_29570001 chr3R_29570001 RAL-365 1377 chr3R 29655652 29655670 chr3R 29655731 29655749 5 79 2.5 0.0 1.2 2.3 97 chr3R 29655652 intron Dop1R2 - chr3R 29655700 intron Dop1R2 - chr3R 29655749 intron Dop1R2 - chr3R_5_29655001 chr3R_29655001 RAL-365 1378 chr3R 29738273 29738293 chr3R 29739740 29739760 hobo 5 1467 2.5 2.5 2.5 1.4 1487 chr3R 29738273 intergenic CG1969 +,CG7598 + chr3R 29739016 intron CG1969 + chr3R 29739760 5` UTR CG1969 + chr3R_5_29735001 chr3R_29735001 RAL-365 1379 chr3R 29758943 29758968 chr3R 29759021 29759045 7 77 1.5 1.0 1.2 3.2 102 chr3R 29758943 3` UTR CR44953 - chr3R 29758994 3` UTR CR44953 - chr3R 29759045 intergenic CR44953 - chr3R_7_29755001 chr3R_29755001 RAL-365 1380 chr3R 29773876 29773907 chr3R 29773965 29773998 8 90 1.5 0.5 1.0 4.0 122 chr3R 29773876 intron kay + chr3R 29773937 intron kay + chr3R 29773998 intron kay + chr3R_8_29770001 chr3R_29770001 RAL-365 1381 chr3R 29882019 29882051 chr3R 29891176 29891208 roo 7 9157 2.0 2.5 2.2 2.2 9189 chr3R 29882019 intron CG31038 + chr3R 29886614 intron CG31038 + chr3R 29891208 intron CG31038 + chr3R_7_29885001 chr3R_29885001 RAL-365 1382 chr3R 29923648 29923664 chr3R 29925253 29925269 7 1605 12.0 11.5 11.8 0.5 1621 chr3R 29923648 intergenic Jon99Cii -,Jon99Ciii + chr3R 29924458 exon Jon99Cii - chr3R 29925269 3` UTR Jon99Ci - chr3R_7_29920001 chr3R_29920001 RAL-365 1383 chr3R 29950575 29950591 chr3R 29950652 29950666 4 76 1.0 1.0 1.0 2.0 91 chr3R 29950575 intergenic TkR99D - chr3R 29950620 intergenic TkR99D - chr3R 29950666 intergenic TkR99D - chr3R_4_29950001 chr3R_29950001 RAL-365 1384 chr3R 30013676 30013693 chr3R 30013759 30013776 4 82 3.0 3.0 3.0 1.0 100 chr3R 30013676 intron CG7920 - chr3R 30013726 intron CG7920 - chr3R 30013776 intron CG7920 - chr3R_4_30010001 chr3R_30010001 RAL-365 1385 chr3R 30032163 30032180 chr3R 30032242 30032259 4 79 1.0 2.0 1.5 1.6 96 chr3R 30032163 intron Axn + chr3R 30032211 intron Axn + chr3R 30032259 intron Axn + chr3R_4_30030001 chr3R_30030001 RAL-365 1386 chr3R 30084850 30084879 chr3R 30086317 30086346 hobo 8 1467 2.5 3.5 3.0 2.0 1496 chr3R 30084850 intron sima + chr3R 30085598 intron sima + chr3R 30086346 intron sima + chr3R_8_30085001 chr3R_30085001 RAL-365 1387 chr3R 30097488 30097653 chr3R 30097568 30097792 10 110 2.0 1.0 1.5 4.0 304 chr3R 30097488 intron sima + chr3R 30097640 intron sima + chr3R 30097792 intron sima + chr3R_10_30095001 chr3R_30095001 RAL-365 1388 chr3R 30181103 30181135 chr3R 30181180 30181212 4 77 1.5 2.0 1.8 1.4 109 chr3R 30181103 3` UTR Bet5 + chr3R 30181158 3` UTR Bet5 + chr3R 30181212 3` UTR Bet5 + chr3R_4_30180001 chr3R_30180001 RAL-365 1389 chr3R 30238778 30238796 chr3R 30239942 30239960 1360 6 1164 3.0 0.0 1.5 2.4 1182 chr3R 30238778 intergenic not near genes chr3R 30239369 intergenic not near genes chr3R 30239960 intergenic not near genes chr3R_6_30235001 chr3R_30235001 RAL-365 1390 chr3R 30307128 30307148 chr3R 30307209 30307228 6 80 0.5 1.5 1.0 3.0 100 chr3R 30307128 intron hdc + chr3R 30307178 intron hdc + chr3R 30307228 intron hdc + chr3R_6_30305001 chr3R_30305001 RAL-365 1391 chr3R 30375543 30375571 chr3R 30383168 30383196 412 6 7625 2.0 3.0 2.5 1.7 7653 chr3R 30375543 intergenic not near genes chr3R 30379370 intergenic not near genes chr3R 30383196 intergenic not near genes chr3R_6_30375001 chr3R_30375001 RAL-365 1392 chr3R 30396215 30396246 chr3R 30404481 30404512 roo 5 8266 2.0 3.5 2.8 1.3 8297 chr3R 30396215 intergenic not near genes chr3R 30400364 intergenic not near genes chr3R 30404512 5` UTR CR45570 + chr3R_5_30400001 chr3R_30400001 RAL-365 1393 chr3R 30445507 30445532 chr3R 30445599 30445624 6 92 1.5 2.0 1.8 2.1 117 chr3R 30445507 intergenic aralar1 -,Osi23 - chr3R 30445566 intergenic aralar1 - chr3R 30445624 intergenic aralar1 - chr3R_6_30445001 chr3R_30445001 RAL-365 1394 chr3R 30456406 30456415 chr3R 30456486 30456496 4 81 1.5 1.0 1.2 1.8 90 chr3R 30456406 intergenic CG2224 - chr3R 30456451 3` UTR CG2224 - chr3R 30456496 3` UTR CG2224 - chr3R_4_30455001 chr3R_30455001 RAL-365 1395 chr3R 30480480 30480508 chr3R 30482948 30482976 jockey 4 2468 3.0 3.5 3.2 1.0 2496 chr3R 30480480 intron PH4alphaEFB + chr3R 30481728 intron PH4alphaEFB + chr3R 30482976 intron PH4alphaEFB + chr3R_4_30480001 chr3R_30480001 RAL-365 1396 chr3R 30507655 30507674 chr3R 30507791 30507810 5 136 2.0 1.5 1.8 1.8 155 chr3R 30507655 intron CG15539 + chr3R 30507732 exon CG15539 + chr3R 30507810 exon CG15539 + chr3R_5_30505001 chr3R_30505001 RAL-365 1397 chr3R 30564328 30564350 chr3R 30564411 30564433 6 82 0.5 3.5 2.0 2.0 105 chr3R 30564328 intron tmod + chr3R 30564380 intron tmod + chr3R 30564433 intron tmod + chr3R_6_30560001 chr3R_30560001 RAL-365 1398 chr3R 30591527 30591539 chr3R 30591866 30591879 4 340 0.0 1.0 0.5 2.7 352 chr3R 30591527 intergenic not near genes chr3R 30591703 intergenic not near genes chr3R 30591879 intergenic not near genes chr3R_4_30590001 chr3R_30590001 RAL-365 1399 chr3R 30620933 30620939 chr3R 30621085 30621094 4 154 2.0 1.0 1.5 1.6 161 chr3R 30620933 intron CG44954 - chr3R 30621014 intron CG44954 - chr3R 30621094 intron CG44954 - chr3R_4_30620001 chr3R_30620001 RAL-365 1400 chr3R 30627613 30627639 chr3R 30627692 30627718 11 79 1.0 1.5 1.2 5.0 105 chr3R 30627613 exon CG2267 - chr3R 30627666 exon CG2267 - chr3R 30627718 exon CG2267 - chr3R_11_30625001 chr3R_30625001 RAL-365 1401 chr3R 30656303 30656330 chr3R 30656382 30656409 6 79 1.0 2.5 1.8 2.1 106 chr3R 30656303 intergenic not near genes chr3R 30656356 intergenic not near genes chr3R 30656409 intergenic not near genes chr3R_6_30655001 chr3R_30655001 RAL-365 1402 chr3R 30679536 30679545 chr3R 30687002 30687014 blood 5 7468 3.5 3.0 3.2 1.2 7478 chr3R 30679536 intergenic not near genes chr3R 30683275 intergenic not near genes chr3R 30687014 intergenic not near genes chr3R_5_30680001 chr3R_30680001 RAL-365 1403 chr3R 30791904 30791943 chr3R 30792019 30792059 15 116 1.5 4.0 2.8 3.9 155 chr3R 30791904 exon wts - chr3R 30791982 intron wts - chr3R 30792059 exon wts - chr3R_15_30790001 chr3R_30790001 RAL-365 1404 chr3R 30850247 30850265 chr3R 30850339 30850357 8 92 3.0 4.0 3.5 1.8 110 chr3R 30850247 intergenic not near genes chr3R 30850302 intergenic not near genes chr3R 30850357 intergenic not near genes chr3R_8_30850001 chr3R_30850001 RAL-365 1405 chr3R 30888924 30888943 chr3R 30893451 30893470 4 4527 13.5 17.5 15.5 0.2 4546 chr3R 30888924 exon Sap-r - chr3R 30891197 intergenic not near genes chr3R 30893470 intergenic not near genes chr3R_4_30890001 chr3R_30890001 RAL-365 1406 chr3R 30900519 30900550 chr3R 30900599 30900630 9 80 2.5 2.5 2.5 2.6 111 chr3R 30900519 exon Cyp4c3 + chr3R 30900574 3` UTR Cyp4c3 + chr3R 30900630 3` UTR Cyp4c3 + chr3R_9_30900001 chr3R_30900001 RAL-365 1407 chr3R 31042114 31042143 chr3R 31042201 31042230 11 87 1.0 2.0 1.5 4.4 116 chr3R 31042114 intron CanA1 + chr3R 31042172 intron CanA1 + chr3R 31042230 intron CanA1 + chr3R_11_31040001 chr3R_31040001 RAL-365 1408 chr3R 31069646 31069676 chr3R 31069741 31069771 7 95 1.5 3.5 2.5 2.0 125 chr3R 31069646 intron Sox100B + chr3R 31069708 intron Sox100B + chr3R 31069771 intron Sox100B + chr3R_7_31065001 chr3R_31065001 RAL-365 1409 chr3R 31074231 31074250 chr3R 31081829 31081847 springer 5 7598 4.5 0.0 2.2 1.6 7616 chr3R 31074231 intron Sox100B + chr3R 31078039 intron Sox100B + chr3R 31081847 intron Sox100B + chr3R_5_31075001 chr3R_31075001 RAL-365 1410 chr3R 31105238 31105248 chr3R 31105495 31105505 6 257 0.5 3.5 2.0 2.0 267 chr3R 31105238 intergenic not near genes chr3R 31105372 intergenic not near genes chr3R 31105505 intergenic not near genes chr3R_6_31105001 chr3R_31105001 RAL-365 1411 chr3R 31279381 31279402 chr3R 31285571 31285593 diver 6 6191 2.5 1.0 1.8 2.1 6212 chr3R 31279381 intergenic not near genes chr3R 31282487 intergenic not near genes chr3R 31285593 intergenic not near genes chr3R_6_31280001 chr3R_31280001 RAL-365 1412 chr3R 31413089 31413117 chr3R 31418288 31418316 copia 8 5199 1.0 1.5 1.2 3.6 5227 chr3R 31413089 intron Gprk2 + chr3R 31415702 intron Gprk2 + chr3R 31418316 intron Gprk2 + chr3R_8_31415001 chr3R_31415001 RAL-365 1413 chr3R 31435362 31435388 chr3R 31435514 31435540 6 151 2.0 1.5 1.8 2.1 178 chr3R 31435362 intron Gprk2 + chr3R 31435451 intron Gprk2 + chr3R 31435540 intron Gprk2 + chr3R_6_31435001 chr3R_31435001 RAL-365 1414 chr3R 31527940 31527959 chr3R 31528018 31528038 10 78 1.0 4.0 2.5 2.9 98 chr3R 31527940 intergenic not near genes chr3R 31527989 intergenic not near genes chr3R 31528038 intergenic not near genes chr3R_10_31525001 chr3R_31525001 RAL-365 1415 chr3R 31691537 31691560 chr3R 31696303 31696325 Doc 5 4765 3.5 5.0 4.2 1.0 4788 chr3R 31691537 intergenic not near genes chr3R 31693931 intergenic not near genes chr3R 31696325 intergenic not near genes chr3R_5_31690001 chr3R_31690001 RAL-365 1416 chr3R 31723224 31723255 chr3R 31723471 31723502 10 246 2.0 2.5 2.2 3.1 278 chr3R 31723224 intron ttk + chr3R 31723363 intron ttk + chr3R 31723502 intron ttk + chr3R_10_31720001 chr3R_31720001 RAL-365 1417 chr3R 31858605 31858624 chr3R 31858762 31858778 5 156 2.5 1.0 1.8 1.8 173 chr3R 31858605 intron heph - chr3R 31858692 intron heph - chr3R 31858778 intron heph - chr3R_5_31855001 chr3R_31855001 RAL-365 1418 chr3R 31921091 31921119 chr3R 31921183 31921211 10 92 1.5 2.5 2.0 3.3 120 chr3R 31921091 intron heph - chr3R 31921151 intron heph - chr3R 31921211 intron heph - chr3R_10_31920001 chr3R_31920001 RAL-365 1419 chr3R 31963223 31963254 chr3R 31963365 31963396 7 142 1.0 0.5 0.8 3.9 173 chr3R 31963223 intron heph - chr3R 31963310 intron heph - chr3R 31963396 intron heph - chr3R_7_31960001 chr3R_31960001 RAL-365 1420 chr3R 32016733 32016758 chr3R 32017104 32017129 8 371 0.5 2.5 1.5 3.2 396 chr3R 32016733 5` UTR CR45557 + chr3R 32016931 5` UTR CR45557 + chr3R 32017129 5` UTR CR45557 + chr3R_8_32015001 chr3R_32015001 RAL-365 1421 chr4 671608 671630 chr4 680191 680213 Tirant 7 8583 2.5 3.0 2.8 1.8 8605 chr4 671608 intron CG11360 + chr4 675910 intron CG11360 + chr4 680213 intron CG11360 + chr4_7_675001 chr4_675001 RAL-365 1422 chr4 896790 896814 chr4 896867 896891 4 77 2.0 2.5 2.2 1.2 101 chr4 896790 intron unc-13 - chr4 896840 intron unc-13 - chr4 896891 intron unc-13 - chr4_4_895001 chr4_895001 RAL-365 1423 chrX 365209 365237 chrX 365398 365426 7 191 12.0 11.5 11.8 0.5 217 chrX 365209 intron,intron CG32816 -,yar + chrX 365318 intron,intron CG32816 -,yar + chrX 365426 intron,intron CG32816 -,yar + chrX_7_365001 chrX_365001 RAL-365 1424 chrX 428416 428452 chrX 434601 434637 3S18 5 6185 2.0 2.0 2.0 1.7 6221 chrX 428416 intron CG32816 - chrX 431526 intron CG32816 - chrX 434637 intron CG32816 - chrX_5_430001 chrX_430001 RAL-365 1425 chrX 547642 547664 chrX 547886 547908 7 244 1.5 0.5 1.0 3.5 266 chrX 547642 intron Appl + chrX 547775 intron Appl + chrX 547908 intron Appl + chrX_7_545001 chrX_545001 RAL-365 1426 chrX 617985 618004 chrX 618065 618084 6 80 1.5 2.5 2.0 2.0 99 chrX 617985 intron CG13366 - chrX 618034 intron CG13366 - chrX 618084 intron CG13366 - chrX_6_615001 chrX_615001 RAL-365 1427 chrX 706810 706827 chrX 707173 707191 4 364 0.0 3.0 1.5 1.6 381 chrX 706810 intron sdk + chrX 707000 intron sdk + chrX 707191 intron sdk + chrX_4_705001 chrX_705001 RAL-365 1428 chrX 802287 802312 chrX 802364 802381 5 75 1.5 4.5 3.0 1.2 94 chrX 802287 exon CG13359 - chrX 802334 exon CG13359 - chrX 802381 exon CG13359 - chrX_5_800001 chrX_800001 RAL-365 1429 chrX 825491 825518 chrX 825717 825746 7 227 0.5 4.0 2.2 2.2 255 chrX 825491 intron CG43867 - chrX 825618 intron CG43867 - chrX 825746 intron CG43867 - chrX_7_825001 chrX_825001 RAL-365 1430 chrX 906708 906729 chrX 908497 908518 S-element 4 1789 2.0 4.5 3.2 1.0 1810 chrX 906708 intron CG43867 - chrX 907613 intron CG43867 - chrX 908518 intron CG43867 - chrX_4_905001 chrX_905001 RAL-365 1431 chrX 911207 911235 chrX 911442 911471 9 236 2.5 3.0 2.8 2.4 264 chrX 911207 intron CG43867 - chrX 911339 intron CG43867 - chrX 911471 intron CG43867 - chrX_9_910001 chrX_910001 RAL-365 1432 chrX 1515231 1515250 chrX 1515308 1515327 6 77 3.5 4.5 4.0 1.2 96 chrX 1515231 intron inc + chrX 1515279 intron inc + chrX 1515327 intron inc + chrX_6_1515001 chrX_1515001 RAL-365 1433 chrX 1954884 1954902 chrX 1962824 1962841 Stalker2 4 7940 3.5 3.0 3.2 1.0 7957 chrX 1954884 intron Hr4 + chrX 1958862 intron Hr4 + chrX 1962841 intron Hr4 + chrX_4_1955001 chrX_1955001 RAL-365 1434 chrX 2069375 2069404 chrX 2069475 2069504 5 100 1.0 2.5 1.8 1.8 129 chrX 2069375 intron,exon CG4199 -,CG4194 + chrX 2069440 intron,3` UTR CG4199 -,CG4194 + chrX 2069504 intron,3` UTR CG4199 -,CG4194 + chrX_5_2065001 chrX_2065001 RAL-365 1435 chrX 2096364 2096386 chrX 2096457 2096479 4 92 1.0 0.5 0.8 2.2 115 chrX 2096364 intron csw + chrX 2096422 intron csw + chrX 2096479 intron csw + chrX_4_2095001 chrX_2095001 RAL-365 1436 chrX 2099154 2099168 chrX 2099308 2099321 7 154 1.0 3.5 2.2 2.2 167 chrX 2099154 intron csw + chrX 2099238 intron csw + chrX 2099321 intron csw + chrX_7_2095001 chrX_2095001 RAL-365 1437 chrX 2399843 2399853 chrX 2408196 2408205 roo 4 8353 6.5 0.0 3.2 1.0 8362 chrX 2399843 intergenic not near genes chrX 2404024 intergenic not near genes chrX 2408205 intergenic not near genes chrX_4_2400001 chrX_2400001 RAL-365 1438 chrX 2429650 2429668 chrX 2429731 2429749 4 81 0.0 0.5 0.2 3.3 99 chrX 2429650 intergenic not near genes chrX 2429700 intergenic not near genes chrX 2429749 intergenic not near genes chrX_4_2425001 chrX_2425001 RAL-365 1439 chrX 2506954 2506966 chrX 2507048 2507060 4 93 0.5 3.0 1.8 1.4 106 chrX 2506954 intron trol - chrX 2507007 intron trol - chrX 2507060 intron trol - chrX_4_2505001 chrX_2505001 RAL-365 1440 chrX 2535819 2535856 chrX 2535895 2535932 6 76 2.0 2.5 2.2 1.9 113 chrX 2535819 intron trol - chrX 2535876 intron trol - chrX 2535932 intron trol - chrX_6_2535001 chrX_2535001 RAL-365 1441 chrX 2568197 2568224 chrX 2568445 2568472 7 247 2.0 3.5 2.8 1.8 275 chrX 2568197 intron Pdfr + chrX 2568334 intron Pdfr + chrX 2568472 intron Pdfr + chrX_7_2565001 chrX_2565001 RAL-365 1442 chrX 2578815 2578829 chrX 2578919 2578933 6 104 5.0 1.0 3.0 1.5 118 chrX 2578815 intergenic Pdfr +,Vha36-3 - chrX 2578874 intergenic Vha36-3 -,Pdfr + chrX 2578933 intergenic Vha36-3 -,Pdfr + chrX_6_2575001 chrX_2575001 RAL-365 1443 chrX 3067935 3067953 chrX 3068021 3068042 5 88 1.0 0.0 0.5 3.3 107 chrX 3067935 intron kirre + chrX 3067988 intron kirre + chrX 3068042 intron kirre + chrX_5_3065001 chrX_3065001 RAL-365 1444 chrX 3203465 3203486 chrX 3203663 3203685 8 199 2.0 1.0 1.5 3.2 220 chrX 3203465 intron dnc + chrX 3203575 intron dnc + chrX 3203685 intron dnc + chrX_8_3200001 chrX_3200001 RAL-365 1445 chrX 3415027 3415042 chrX 3421212 3421227 3S18 4 6185 0.5 1.0 0.8 2.2 6200 chrX 3415027 intron,intron CR44999 +,CG12535 - chrX 3418127 intron,intron CR44999 +,CG12535 - chrX 3421227 intron,intron CR44999 +,CG12535 - chrX_4_3415001 chrX_3415001 RAL-365 1446 chrX 3493097 3493125 chrX 3502256 3502284 roo 5 9159 1.5 3.0 2.2 1.6 9187 chrX 3493097 intron,intron CR44999 +,Gas8 - chrX 3497690 intron,intron CR44999 +,Gas8 - chrX 3502284 intron,intron CR44999 +,Gas8 - chrX_5_3495001 chrX_3495001 RAL-365 1447 chrX 3657415 3657447 chrX 3657495 3657527 8 80 1.5 3.0 2.2 2.5 112 chrX 3657415 intron AstA-R1 + chrX 3657471 intron AstA-R1 + chrX 3657527 intron AstA-R1 + chrX_8_3655001 chrX_3655001 RAL-365 1448 chrX 3703722 3703725 chrX 3703810 3703813 4 88 0.5 1.0 0.8 2.2 91 chrX 3703722 intergenic CR45102 + chrX 3703768 intergenic CR45102 + chrX 3703813 intergenic not near genes chrX_4_3700001 chrX_3700001 RAL-365 1449 chrX 3713100 3713104 chrX 3713208 3713212 4 108 3.5 1.5 2.5 1.1 112 chrX 3713100 intron Rala - chrX 3713156 intron Rala - chrX 3713212 intron Rala - chrX_4_3710001 chrX_3710001 RAL-365 1450 chrX 3881269 3881299 chrX 3881408 3881438 4 139 2.5 1.0 1.8 1.4 169 chrX 3881269 intron VhaAC39-1 + chrX 3881354 intron VhaAC39-1 + chrX 3881438 intron VhaAC39-1 + chrX_4_3880001 chrX_3880001 RAL-365 1451 chrX 3986868 3986890 chrX 3994501 3994523 412 4 7633 2.0 0.0 1.0 2.0 7655 chrX 3986868 intergenic not near genes chrX 3990696 intergenic not near genes chrX 3994523 intergenic not near genes chrX_4_3990001 chrX_3990001 RAL-365 1452 chrX 4047466 4047496 chrX 4047579 4047609 9 113 3.0 1.5 2.2 2.8 143 chrX 4047466 intergenic CR45482 - chrX 4047538 intergenic CR45482 - chrX 4047609 3` UTR CR45482 - chrX_9_4045001 chrX_4045001 RAL-365 1453 chrX 4101885 4101896 chrX 4101962 4101976 4 79 0.5 3.5 2.0 1.3 91 chrX 4101885 exon CG15375 + chrX 4101930 exon CG15375 + chrX 4101976 exon CG15375 + chrX_4_4100001 chrX_4100001 RAL-365 1454 chrX 4132664 4132698 chrX 4132832 4132865 7 168 1.5 1.0 1.2 3.2 201 chrX 4132664 3` UTR GlcAT-I + chrX 4132764 3` UTR GlcAT-I + chrX 4132865 intergenic Fas2 -,GlcAT-I + chrX_7_4130001 chrX_4130001 RAL-365 1455 chrX 4157901 4157925 chrX 4164936 4164960 297 5 7035 1.0 2.5 1.8 1.8 7059 chrX 4157901 intron Fas2 - chrX 4161430 intron Fas2 - chrX 4164960 intron Fas2 - chrX_5_4160001 chrX_4160001 RAL-365 1456 chrX 4252945 4252979 chrX 4253033 4253067 5 88 0.5 1.0 0.8 2.8 122 chrX 4252945 intergenic CG15576 - chrX 4253006 intergenic CG15576 - chrX 4253067 intergenic CG15576 - chrX_5_4250001 chrX_4250001 RAL-365 1457 chrX 4262753 4262776 chrX 4262852 4262874 10 99 3.5 1.0 2.2 3.1 121 chrX 4262753 intergenic not near genes chrX 4262814 intergenic not near genes chrX 4262874 intergenic not near genes chrX_10_4260001 chrX_4260001 RAL-365 1458 chrX 4693613 4693636 chrX 4693691 4693714 7 78 0.0 0.5 0.2 5.8 101 chrX 4693613 intron ctp + chrX 4693664 intron ctp + chrX 4693714 intron ctp + chrX_7_4690001 chrX_4690001 RAL-365 1459 chrX 4698073 4698092 chrX 4698163 4698185 6 92 2.5 3.0 2.8 1.6 112 chrX 4698073 intron ctp + chrX 4698129 intron ctp + chrX 4698185 intron ctp + chrX_6_4695001 chrX_4695001 RAL-365 1460 chrX 4700391 4700425 chrX 4700734 4700768 jockey 4 342 0.0 1.0 0.5 2.7 377 chrX 4700391 3` UTR ctp + chrX 4700580 3` UTR ctp + chrX 4700768 3` UTR ctp + chrX_4_4700001 chrX_4700001 RAL-365 1461 chrX 4731822 4731832 chrX 4736915 4736925 jockey 5 5093 3.5 4.5 4.0 1.0 5103 chrX 4731822 intergenic not near genes chrX 4734374 intergenic not near genes chrX 4736925 intergenic not near genes chrX_5_4730001 chrX_4730001 RAL-365 1462 chrX 4757388 4757400 chrX 4757467 4757479 4 78 1.5 1.5 1.5 1.6 91 chrX 4757388 intergenic not near genes chrX 4757434 intergenic not near genes chrX 4757479 intergenic not near genes chrX_4_4755001 chrX_4755001 RAL-365 1463 chrX 4827979 4827996 chrX 4835348 4835367 Stalker4 7 7371 2.5 1.0 1.8 2.5 7388 chrX 4827979 intergenic not near genes chrX 4831673 intergenic not near genes chrX 4835367 intergenic not near genes chrX_7_4830001 chrX_4830001 RAL-365 1464 chrX 4957640 4957667 chrX 4957729 4957756 7 89 0.0 2.0 1.0 3.5 116 chrX 4957640 intron CR44833 - chrX 4957698 intron CR44833 - chrX 4957756 intron CR44833 - chrX_7_4955001 chrX_4955001 RAL-365 1465 chrX 4965556 4965590 chrX 4965636 4965670 7 80 0.5 2.0 1.2 3.2 114 chrX 4965556 intron CR44833 - chrX 4965613 intron CR44833 - chrX 4965670 intron CR44833 - chrX_7_4965001 chrX_4965001 RAL-365 1466 chrX 5131399 5131426 chrX 5131480 5131507 7 81 2.0 2.5 2.2 2.2 108 chrX 5131399 intron,intron CG15465 +,rg + chrX 5131453 intron,intron CG15465 +,rg + chrX 5131507 intron,intron CG15465 +,rg + chrX_7_5130001 chrX_5130001 RAL-365 1467 chrX 5338717 5338735 chrX 5339969 5339988 jockey 4 1253 0.5 0.5 0.5 2.7 1271 chrX 5338717 intergenic not near genes chrX 5339352 intergenic not near genes chrX 5339988 intergenic SK + chrX_4_5335001 chrX_5335001 RAL-365 1468 chrX 5362844 5362848 chrX 5362956 5362960 4 112 3.5 2.0 2.8 1.1 116 chrX 5362844 intron SK + chrX 5362902 intron SK + chrX 5362960 intron SK + chrX_4_5360001 chrX_5360001 RAL-365 1469 chrX 5366308 5366332 chrX 5366436 5366460 5 128 0.0 2.5 1.2 2.3 152 chrX 5366308 intron SK + chrX 5366384 intron SK + chrX 5366460 intron SK + chrX_5_5365001 chrX_5365001 RAL-365 1470 chrX 5450191 5450214 chrX 5450597 5450619 4 406 2.0 0.5 1.2 1.8 428 chrX 5450191 intron SPR + chrX 5450405 intron SPR + chrX 5450619 intron SPR + chrX_4_5450001 chrX_5450001 RAL-365 1471 chrX 5524840 5524873 chrX 5528703 5528736 412 4 3863 2.0 0.5 1.2 1.8 3896 chrX 5524840 intergenic snoRNA:Psi28S-3342 - chrX 5526788 intergenic not near genes chrX 5528736 intergenic Vsx2 - chrX_4_5525001 chrX_5525001 RAL-365 1472 chrX 5763101 5763129 chrX 5763239 5763267 7 138 2.5 3.0 2.8 1.8 166 chrX 5763101 intron MAPk-Ak2 - chrX 5763184 intron MAPk-Ak2 - chrX 5763267 intron MAPk-Ak2 - chrX_7_5760001 chrX_5760001 RAL-365 1473 chrX 5884165 5884191 chrX 5884406 5884432 pogo 6 241 1.0 1.0 1.0 3.0 267 chrX 5884165 intron CR45668 - chrX 5884298 intron CR45668 - chrX 5884432 intron CR45668 - chrX_6_5880001 chrX_5880001 RAL-365 1474 chrX 6003282 6003311 chrX 6003363 6003390 8 81 0.0 3.0 1.5 3.2 108 chrX 6003282 intron CR44498 + chrX 6003336 intron CR44498 + chrX 6003390 intron CR44498 + chrX_8_6000001 chrX_6000001 RAL-365 1475 chrX 6171585 6171617 chrX 6179017 6179050 Quasimodo 5 7433 1.0 2.5 1.8 1.8 7465 chrX 6171585 intron Ca-alpha1T - chrX 6175318 intron Ca-alpha1T - chrX 6179050 intron Ca-alpha1T - chrX_5_6175001 chrX_6175001 RAL-365 1476 chrX 6314417 6314448 chrX 6314493 6314524 5 76 0.5 1.0 0.8 2.8 107 chrX 6314417 intron CG15894 + chrX 6314470 intron CG15894 + chrX 6314524 intron CG15894 + chrX_5_6310001 chrX_6310001 RAL-365 1477 chrX 6335216 6335244 chrX 6337726 6337754 Tirant 4 2510 0.0 1.5 0.8 2.2 2538 chrX 6335216 intergenic not near genes chrX 6336485 intergenic not near genes chrX 6337754 intergenic CG3842 + chrX_4_6335001 chrX_6335001 RAL-365 1478 chrX 6388667 6388695 chrX 6388743 6388771 4 76 0.0 3.0 1.5 1.6 104 chrX 6388667 intergenic not near genes chrX 6388719 intergenic not near genes chrX 6388771 intergenic not near genes chrX_4_6385001 chrX_6385001 RAL-365 1479 chrX 6539920 6539948 chrX 6540022 6540050 7 102 0.0 1.5 0.8 3.9 130 chrX 6539920 intergenic not near genes chrX 6539985 intergenic not near genes chrX 6540050 intergenic not near genes chrX_7_6535001 chrX_6535001 RAL-365 1480 chrX 6562819 6562846 chrX 6571301 6571328 Tirant 7 8482 2.0 0.0 1.0 3.5 8509 chrX 6562819 intron CG34417 + chrX 6567074 intron CG34417 + chrX 6571328 intron CG34417 + chrX_7_6565001 chrX_6565001 RAL-365 1481 chrX 6897225 6897246 chrX 7441721 7441741 4 544496 1.5 4.5 3.0 1.0 544516 chrX 6897225 intergenic not near genes chrX 7169483 intron,intron CG9650 +,CR44357 - chrX 7441741 intergenic not near genes chrX_4_7165001 chrX_7165001 RAL-365 1482 chrX 6976493 6976515 chrX 6976589 6976611 4 96 2.0 2.5 2.2 1.2 118 chrX 6976493 intron ogre - chrX 6976552 intron ogre - chrX 6976611 intron ogre - chrX_4_6975001 chrX_6975001 RAL-365 1483 chrX 7023601 7023630 chrX 7030989 7031020 Tabor 8 7389 1.0 1.5 1.2 3.6 7419 chrX 7023601 intron CG12541 - chrX 7027310 intron CG12541 - chrX 7031020 intron CG12541 - chrX_8_7025001 chrX_7025001 RAL-365 1484 chrX 7125246 7125272 chrX 7134405 7134431 roo 4 9159 1.0 0.5 0.8 2.2 9185 chrX 7125246 intergenic not near genes chrX 7129838 intergenic not near genes chrX 7134431 intergenic not near genes chrX_4_7125001 chrX_7125001 RAL-365 1485 chrX 7262951 7262963 chrX 7263039 7263053 5 89 11.0 15.0 13.0 0.4 102 chrX 7262951 intron CR44357 - chrX 7263002 intron CR44357 - chrX 7263053 intron CR44357 - chrX_5_7260001 chrX_7260001 RAL-365 1486 chrX 7560162 7560177 chrX 7560247 7560260 5 85 3.0 0.0 1.5 2.0 98 chrX 7560162 intergenic not near genes chrX 7560211 intergenic not near genes chrX 7560260 intergenic not near genes chrX_5_7560001 chrX_7560001 RAL-365 1487 chrX 7702901 7702912 chrX 7703340 7703351 jockey 4 439 3.5 2.0 2.8 1.1 450 chrX 7702901 intron CHES-1-like - chrX 7703126 intron CHES-1-like - chrX 7703351 intron CHES-1-like - chrX_4_7700001 chrX_7700001 RAL-365 1488 chrX 7737131 7737147 chrX 7737243 7737259 5 112 1.0 1.0 1.0 2.5 128 chrX 7737131 5` UTR Tom40 + chrX 7737195 intron Tom40 + chrX 7737259 intron Tom40 + chrX_5_7735001 chrX_7735001 RAL-365 1489 chrX 7881851 7881866 chrX 7881933 7881946 4 81 1.5 0.5 1.0 2.0 95 chrX 7881851 intergenic Ir7f -,Ir7e - chrX 7881898 intergenic Ir7f -,Ir7e - chrX 7881946 3` UTR Ir7f - chrX_4_7880001 chrX_7880001 RAL-365 1490 chrX 8092289 8092308 chrX 8092374 8092393 5 85 3.0 1.5 2.2 1.6 104 chrX 8092289 intron Ubc-E2H - chrX 8092341 intron Ubc-E2H - chrX 8092393 intron Ubc-E2H - chrX_5_8090001 chrX_8090001 RAL-365 1491 chrX 8506030 8506060 chrX 8506108 8506138 4 78 0.0 2.5 1.2 1.8 108 chrX 8506030 intron CG33181 + chrX 8506084 intron CG33181 + chrX 8506138 intron CG33181 + chrX_4_8505001 chrX_8505001 RAL-365 1492 chrX 8506536 8506560 chrX 8506743 8506766 6 208 0.0 1.5 0.8 3.3 230 chrX 8506536 intron CG33181 + chrX 8506651 intron CG33181 + chrX 8506766 intron CG33181 + chrX_6_8505001 chrX_8505001 RAL-365 1493 chrX 8748012 8748022 chrX 8748094 8748103 6 82 2.5 0.5 1.5 2.4 91 chrX 8748012 intergenic not near genes chrX 8748058 intergenic not near genes chrX 8748103 intergenic not near genes chrX_6_8745001 chrX_8745001 RAL-365 1494 chrX 8894097 8894128 chrX 8894198 8894229 7 101 1.5 1.5 1.5 2.8 132 chrX 8894097 intron Moe - chrX 8894163 intron Moe - chrX 8894229 intron Moe - chrX_7_8890001 chrX_8890001 RAL-365 1495 chrX 8922343 8922361 chrX 8922777 8922795 jockey 6 434 1.0 2.0 1.5 2.4 452 chrX 8922343 intron rdgA + chrX 8922569 intron rdgA + chrX 8922795 intron rdgA + chrX_6_8920001 chrX_8920001 RAL-365 1496 chrX 8948758 8948788 chrX 8956268 8956298 roo 4 7510 1.5 2.5 2.0 1.3 7540 chrX 8948758 intron rdgA + chrX 8952528 intron rdgA + chrX 8956298 intron rdgA + chrX_4_8950001 chrX_8950001 RAL-365 1497 chrX 9229907 9229936 chrX 9229987 9230016 8 80 1.5 1.0 1.2 3.6 109 chrX 9229907 intron CG12121 - chrX 9229962 intron CG12121 - chrX 9230016 intron CG12121 - chrX_8_9225001 chrX_9225001 RAL-365 1498 chrX 9508145 9508155 chrX 9509663 9509673 jockey 4 1518 2.0 3.0 2.5 1.1 1528 chrX 9508145 intron CG32700 - chrX 9508909 intron CG32700 - chrX 9509673 intron CG32700 - chrX_4_9505001 chrX_9505001 RAL-365 1499 chrX 9575791 9575814 chrX 9576115 9576135 mdg3 5 323 0.5 3.0 1.8 1.8 344 chrX 9575791 intron,exon CG32699 -,CG42395 - chrX 9575963 intron,intron CG32699 -,CG42395 - chrX 9576135 intron,5` UTR CG32699 -,CG42395 - chrX_5_9575001 chrX_9575001 RAL-365 1500 chrX 10267301 10267319 chrX 10276451 10276469 roo 4 9149 0.5 1.0 0.8 2.2 9168 chrX 10267301 3` UTR alpha-Man-I - chrX 10271885 intron alpha-Man-I - chrX 10276469 3` UTR alpha-Man-I - chrX_4_10270001 chrX_10270001 RAL-365 1501 chrX 10666444 10666475 chrX 10666611 10666642 8 167 3.5 3.5 3.5 1.8 198 chrX 10666444 intron X11Lbeta + chrX 10666543 intron X11Lbeta + chrX 10666642 intron X11Lbeta + chrX_8_10665001 chrX_10665001 RAL-365 1502 chrX 10686052 10686083 chrX 10691186 10691220 roo 5 5136 1.0 2.5 1.8 1.8 5168 chrX 10686052 intron X11Lbeta + chrX 10688636 intron X11Lbeta + chrX 10691220 intron X11Lbeta + chrX_5_10685001 chrX_10685001 RAL-365 1503 chrX 10803040 10803045 chrX 10803125 10803130 4 85 3.5 1.5 2.5 1.1 90 chrX 10803040 intron Imp - chrX 10803085 intron Imp - chrX 10803130 intron Imp - chrX_4_10800001 chrX_10800001 RAL-365 1504 chrX 11033912 11033928 chrX 11036131 11036148 5 2218 1.5 1.0 1.2 2.3 2236 chrX 11033912 intron CG42339 - chrX 11035030 intron CG42339 - chrX 11036148 intron CG42339 - chrX_5_11035001 chrX_11035001 RAL-365 1505 chrX 11184254 11184283 chrX 11189330 11189359 flea 4 5076 1.0 1.5 1.2 1.8 5105 chrX 11184254 intergenic not near genes chrX 11186806 intergenic not near genes chrX 11189359 intergenic not near genes chrX_4_11185001 chrX_11185001 RAL-365 1506 chrX 11194450 11194460 chrX 11201868 11201881 gypsy5 5 7420 1.5 3.0 2.2 1.6 7431 chrX 11194450 intergenic not near genes chrX 11198166 intergenic not near genes chrX 11201881 intergenic CG11106 + chrX_5_11195001 chrX_11195001 RAL-365 1507 chrX 11496016 11496040 chrX 11496196 11496219 5 180 1.0 1.0 1.0 2.5 203 chrX 11496016 intron Drak + chrX 11496118 intron Drak + chrX 11496219 intron Drak + chrX_5_11495001 chrX_11495001 RAL-365 1508 chrX 11719872 11719899 chrX 11719952 11719979 4 80 2.0 1.0 1.5 1.6 107 chrX 11719872 3` UTR prtp + chrX 11719926 intergenic prtp +,Tango10 + chrX 11719979 intergenic prtp +,Tango10 + chrX_4_11715001 chrX_11715001 RAL-365 1509 chrX 11818421 11818433 chrX 11818512 11818524 4 91 1.0 0.5 0.8 2.2 103 chrX 11818421 intron rudhira + chrX 11818472 intron rudhira + chrX 11818524 intron rudhira + chrX_4_11815001 chrX_11815001 RAL-365 1510 chrX 11922371 11922380 chrX 11922503 11922513 4 132 1.0 2.5 1.8 1.4 142 chrX 11922371 exon Sclp - chrX 11922442 intron Sclp - chrX 11922513 intron Sclp - chrX_4_11920001 chrX_11920001 RAL-365 1511 chrX 12094044 12094067 chrX 12094136 12094159 4 92 1.5 1.0 1.2 1.8 115 chrX 12094044 intron,intron CR43960 +,Ten-a + chrX 12094102 intron,intron CR43960 +,Ten-a + chrX 12094159 intron,intron CR43960 +,Ten-a + chrX_4_12090001 chrX_12090001 RAL-365 1512 chrX 12168143 12168159 chrX 12173585 12173601 I-element 5 5442 3.0 2.0 2.5 1.4 5458 chrX 12168143 intron Ten-a + chrX 12170872 intron Ten-a + chrX 12173601 intron Ten-a + chrX_5_12170001 chrX_12170001 RAL-365 1513 chrX 12202777 12202797 chrX 12202861 12202881 5 84 0.5 2.0 1.2 2.3 104 chrX 12202777 intron Ten-a + chrX 12202829 intron Ten-a + chrX 12202881 intron Ten-a + chrX_5_12200001 chrX_12200001 RAL-365 1514 chrX 12532644 12532651 chrX 12532790 12532797 5 146 1.5 0.0 0.8 2.8 153 chrX 12532644 intron CG43921 - chrX 12532720 intron CG43921 - chrX 12532797 intron CG43921 - chrX_5_12530001 chrX_12530001 RAL-365 1515 chrX 12533816 12533823 chrX 12533892 12533897 4 76 0.0 3.5 1.8 1.4 81 chrX 12533816 intron CG43921 - chrX 12533856 intron CG43921 - chrX 12533897 intron CG43921 - chrX_4_12530001 chrX_12530001 RAL-365 1516 chrX 13172357 13172383 chrX 13172432 13172458 7 76 0.5 2.0 1.2 3.2 101 chrX 13172357 exon CG34411 - chrX 13172408 intron CG34411 - chrX 13172458 intron CG34411 - chrX_7_13170001 chrX_13170001 RAL-365 1517 chrX 13236888 13236902 chrX 13236973 13236987 4 85 0.0 1.5 0.8 2.2 99 chrX 13236888 intron mew - chrX 13236938 intron mew - chrX 13236987 intron mew - chrX_4_13235001 chrX_13235001 RAL-365 1518 chrX 13269201 13269236 chrX 13269276 13269312 6 76 0.0 0.0 0.0 6.0 111 chrX 13269201 intron HDAC4 - chrX 13269256 intron HDAC4 - chrX 13269312 intron HDAC4 - chrX_6_13265001 chrX_13265001 RAL-365 1519 chrX 13278177 13278181 chrX 13278260 13278264 4 83 3.0 1.5 2.2 1.2 87 chrX 13278177 intron HDAC4 - chrX 13278220 intron HDAC4 - chrX 13278264 intron HDAC4 - chrX_4_13275001 chrX_13275001 RAL-365 1520 chrX 13374835 13374865 chrX 13374915 13374945 7 80 1.0 1.0 1.0 3.5 110 chrX 13374835 intron CG1640 + chrX 13374890 intron CG1640 + chrX 13374945 intron CG1640 + chrX_7_13370001 chrX_13370001 RAL-365 1521 chrX 13429474 13429495 chrX 13430623 13430644 jockey 5 1149 0.0 3.5 1.8 1.8 1170 chrX 13429474 intergenic not near genes chrX 13430059 intergenic not near genes chrX 13430644 intergenic not near genes chrX_5_13430001 chrX_13430001 RAL-365 1522 chrX 13463646 13463673 chrX 13469223 13469250 mdg3 6 5577 1.0 0.0 0.5 4.0 5604 chrX 13463646 intron Neto + chrX 13466448 intron Neto + chrX 13469250 intron Neto + chrX_6_13465001 chrX_13465001 RAL-365 1523 chrX 13908801 13908810 chrX 13908879 13908886 4 76 1.5 4.0 2.8 1.1 85 chrX 13908801 intron mamo - chrX 13908844 intron mamo - chrX 13908886 intron mamo - chrX_4_13905001 chrX_13905001 RAL-365 1524 chrX 14105020 14105054 chrX 14114171 14114205 roo 4 9151 4.5 0.5 2.5 1.1 9185 chrX 14105020 intergenic not near genes chrX 14109612 intergenic not near genes chrX 14114205 5` UTR CR44657 + chrX_4_14105001 chrX_14105001 RAL-365 1525 chrX 14167407 14167431 chrX 14167501 14167526 6 95 1.0 1.5 1.2 2.7 119 chrX 14167407 intergenic not near genes chrX 14167466 intergenic not near genes chrX 14167526 intergenic not near genes chrX_6_14165001 chrX_14165001 RAL-365 1526 chrX 14209473 14209489 chrX 14209564 14209579 4 91 1.0 3.5 2.2 1.2 106 chrX 14209473 intron,intron l(1)G0007 +,l(1)G0469 - chrX 14209526 intron,intron l(1)G0007 +,l(1)G0469 - chrX 14209579 intron,intron l(1)G0007 +,l(1)G0469 - chrX_4_14205001 chrX_14205001 RAL-365 1527 chrX 14359536 14359559 chrX 14359969 14359991 5 433 3.0 1.5 2.2 1.6 455 chrX 14359536 intron dpr8 + chrX 14359764 intron dpr8 + chrX 14359991 intron dpr8 + chrX_5_14355001 chrX_14355001 RAL-365 1528 chrX 14411274 14411289 chrX 14411352 14411367 4 78 1.0 1.5 1.2 1.8 93 chrX 14411274 intron dpr8 + chrX 14411320 intron dpr8 + chrX 14411367 intron dpr8 + chrX_4_14410001 chrX_14410001 RAL-365 1529 chrX 14636463 14636491 chrX 14641904 14641932 I-element 7 5441 2.5 1.5 2.0 2.3 5469 chrX 14636463 intron NetA - chrX 14639198 intron NetA - chrX 14641932 intron NetA - chrX_7_14635001 chrX_14635001 RAL-365 1530 chrX 14778027 14778048 chrX 14782824 14782845 Doc 4 4797 2.5 1.5 2.0 1.3 4818 chrX 14778027 intergenic CG5347 + chrX 14780436 intergenic not near genes chrX 14782845 intergenic Ag5r2 - chrX_4_14780001 chrX_14780001 RAL-365 1531 chrX 14917857 14917887 chrX 14917975 14918008 7 120 13.5 6.5 10.0 0.6 151 chrX 14917857 intron,exon Flo2 +,Eo - chrX 14917932 intron,exon Flo2 +,Eo - chrX 14918008 intron,exon Flo2 +,Eo - chrX_7_14915001 chrX_14915001 RAL-365 1532 chrX 15225412 15225420 chrX 15225505 15225513 5 93 3.5 0.0 1.8 1.8 101 chrX 15225412 intergenic CR44430 + chrX 15225462 intergenic CR44430 + chrX 15225513 5` UTR CR44430 + chrX_5_15225001 chrX_15225001 RAL-365 1533 chrX 15413058 15413085 chrX 15417359 15417387 Juan 5 4302 3.0 2.0 2.5 1.4 4329 chrX 15413058 intron Cngl - chrX 15415222 intron Cngl - chrX 15417387 intron Cngl - chrX_5_15415001 chrX_15415001 RAL-365 1534 chrX 15497601 15497610 chrX 15497691 15497700 5 90 2.5 0.5 1.5 2.0 99 chrX 15497601 intron,3` UTR Gmap +,CR44888 - chrX 15497650 intron,3` UTR Gmap +,CR44888 - chrX 15497700 intron,3` UTR Gmap +,CR44888 - chrX_5_15495001 chrX_15495001 RAL-365 1535 chrX 15536701 15536709 chrX 15536778 15536786 5 77 5.5 6.0 5.8 0.7 85 chrX 15536701 intron Ac13E - chrX 15536744 intron Ac13E - chrX 15536786 intron Ac13E - chrX_5_15535001 chrX_15535001 RAL-365 1536 chrX 16100560 16100565 chrX 16100639 16100644 4 79 2.5 1.0 1.8 1.4 84 chrX 16100560 intron,intron CG42353 -,CG42354 - chrX 16100602 intron,intron CG42353 -,CG42354 - chrX 16100644 intron,intron CG42353 -,CG42354 - chrX_4_16100001 chrX_16100001 RAL-365 1537 chrX 16185352 16185373 chrX 16185451 16185472 4 99 5.0 2.5 3.8 0.8 120 chrX 16185352 intergenic not near genes chrX 16185412 intergenic not near genes chrX 16185472 intergenic not near genes chrX_4_16185001 chrX_16185001 RAL-365 1538 chrX 16218585 16218607 chrX 16218902 16218924 4 317 2.5 1.0 1.8 1.4 339 chrX 16218585 intergenic not near genes chrX 16218754 intergenic not near genes chrX 16218924 intergenic not near genes chrX_4_16215001 chrX_16215001 RAL-365 1539 chrX 16222785 16222809 chrX 16231135 16231159 roo 5 8350 0.0 1.0 0.5 3.3 8374 chrX 16222785 intergenic not near genes chrX 16226972 intergenic not near genes chrX 16231159 intergenic not near genes chrX_5_16225001 chrX_16225001 RAL-365 1540 chrX 16492647 16492672 chrX 16498223 16498247 mdg3 4 5576 0.5 3.0 1.8 1.4 5600 chrX 16492647 intron para - chrX 16495447 intron para - chrX 16498247 intron para - chrX_4_16495001 chrX_16495001 RAL-365 1541 chrX 17011973 17011989 chrX 17012055 17012072 4 82 0.5 3.0 1.8 1.4 99 chrX 17011973 intron CG45002 - chrX 17012022 intron CG45002 - chrX 17012072 intron CG45002 - chrX_4_17010001 chrX_17010001 RAL-365 1542 chrX 17234261 17234285 chrX 17234355 17234382 4 95 2.5 0.0 1.2 1.8 121 chrX 17234261 intron f + chrX 17234322 intron f + chrX 17234382 intron f + chrX_4_17230001 chrX_17230001 RAL-365 1543 chrX 17275533 17275538 chrX 17275611 17275617 5 79 1.5 2.5 2.0 1.7 84 chrX 17275533 intron f + chrX 17275575 intron f + chrX 17275617 intron f + chrX_5_17275001 chrX_17275001 RAL-365 1544 chrX 17536856 17536876 chrX 17536939 17536959 4 83 0.5 1.0 0.8 2.2 103 chrX 17536856 intron CG43658 - chrX 17536908 intron CG43658 - chrX 17536959 intron CG43658 - chrX_4_17535001 chrX_17535001 RAL-365 1545 chrX 17545032 17545037 chrX 17545114 17545119 5 82 0.0 4.0 2.0 1.7 87 chrX 17545032 intron CG43658 - chrX 17545076 intron CG43658 - chrX 17545119 intron CG43658 - chrX_5_17545001 chrX_17545001 RAL-365 1546 chrX 17546987 17547003 chrX 17547120 17547136 5 133 0.0 0.5 0.2 4.2 149 chrX 17546987 intron CG43658 - chrX 17547062 intron CG43658 - chrX 17547136 intron CG43658 - chrX_5_17545001 chrX_17545001 RAL-365 1547 chrX 17731926 17731945 chrX 17732089 17732108 11 163 3.0 1.5 2.2 3.4 182 chrX 17731926 intron CG42684 + chrX 17732017 intron CG42684 + chrX 17732108 intron CG42684 + chrX_11_17730001 chrX_17730001 RAL-365 1548 chrX 17978546 17978575 chrX 17978624 17978650 6 77 2.0 0.5 1.2 2.7 104 chrX 17978546 intron Sh - chrX 17978598 intron Sh - chrX 17978650 intron Sh - chrX_6_17975001 chrX_17975001 RAL-365 1549 chrX 18008295 18008316 chrX 18011925 18011945 4 3629 8.0 8.0 8.0 0.4 3650 chrX 18008295 intron Sh - chrX 18010120 intron Sh - chrX 18011945 intron Sh - chrX_4_18010001 chrX_18010001 RAL-365 1550 chrX 18033996 18034010 chrX 18034113 18034126 6 117 0.0 1.0 0.5 4.0 130 chrX 18033996 intron Sh - chrX 18034061 intron Sh - chrX 18034126 intron Sh - chrX_6_18030001 chrX_18030001 RAL-365 1551 chrX 18063361 18063385 chrX 18063435 18063463 7 76 1.0 1.0 1.0 3.5 102 chrX 18063361 intergenic Sh - chrX 18063412 intergenic Sh - chrX 18063463 intergenic Sh - chrX_7_18060001 chrX_18060001 RAL-365 1552 chrX 18194071 18194104 chrX 18194606 18194639 BS 7 535 1.0 0.5 0.8 3.9 568 chrX 18194071 intron Frq2 + chrX 18194355 intron Frq2 + chrX 18194639 intron Frq2 + chrX_7_18190001 chrX_18190001 RAL-365 1553 chrX 18230521 18230544 chrX 18235209 18235231 9 4687 13.0 9.5 11.2 0.7 4710 chrX 18230521 intergenic not near genes chrX 18232876 intergenic not near genes chrX 18235231 intergenic not near genes chrX_9_18230001 chrX_18230001 RAL-365 1554 chrX 18429493 18429524 chrX 18434804 18434835 Transpac 5 5311 2.0 2.5 2.2 1.6 5342 chrX 18429493 intergenic not near genes chrX 18432164 intergenic not near genes chrX 18434835 intergenic not near genes chrX_5_18430001 chrX_18430001 RAL-365 1555 chrX 18490048 18490051 chrX 18490203 18490206 4 155 2.5 1.5 2.0 1.3 158 chrX 18490048 intergenic CG15046 - chrX 18490127 intergenic not near genes chrX 18490206 intergenic not near genes chrX_4_18490001 chrX_18490001 RAL-365 1556 chrX 18512008 18512032 chrX 18512097 18512121 4 89 1.5 1.0 1.2 1.8 113 chrX 18512008 intron Ggt-1 - chrX 18512064 5` UTR Ggt-1 - chrX 18512121 5` UTR Ggt-1 - chrX_4_18510001 chrX_18510001 RAL-365 1557 chrX 18582157 18582171 chrX 18582235 18582249 5 77 2.5 1.0 1.8 1.8 92 chrX 18582157 intergenic not near genes chrX 18582203 intergenic not near genes chrX 18582249 intergenic not near genes chrX_5_18580001 chrX_18580001 RAL-365 1558 chrX 18645013 18645041 chrX 18645111 18645139 5 98 1.5 0.5 1.0 2.5 126 chrX 18645013 intron Rip11 - chrX 18645076 intron Rip11 - chrX 18645139 intron Rip11 - chrX_5_18645001 chrX_18645001 RAL-365 1559 chrX 18698849 18698873 chrX 18698966 18698990 4 117 0.5 1.5 1.0 2.0 141 chrX 18698849 intergenic not near genes chrX 18698920 intergenic not near genes chrX 18698990 intergenic not near genes chrX_4_18695001 chrX_18695001 RAL-365 1560 chrX 18957076 18957098 chrX 18965739 18965761 roo 5 8663 0.5 1.0 0.8 2.8 8685 chrX 18957076 intron CG43759 + chrX 18961418 intron CG43759 + chrX 18965761 intron CG43759 + chrX_5_18960001 chrX_18960001 RAL-365 1561 chrX 19060410 19060424 chrX 19065194 19065207 Doc 6 4784 0.5 1.5 1.0 3.0 4797 chrX 19060410 intron CG14190 + chrX 19062808 intron CG14190 + chrX 19065207 intron CG14190 + chrX_6_19060001 chrX_19060001 RAL-365 1562 chrX 19136560 19136585 chrX 19143480 19143504 412 4 6919 1.5 4.0 2.8 1.1 6944 chrX 19136560 intergenic not near genes chrX 19140032 intergenic not near genes chrX 19143504 3` UTR RhoGAP18B - chrX_4_19140001 chrX_19140001 RAL-365 1563 chrX 13057298 13057300 chrX 19242812 19242814 5 6185514 5.5 11.0 8.2 0.5 6185516 chrX 13057298 intron rad + chrX 16150056 intergenic not near genes chrX 19242814 intergenic not near genes chrX_5_16150001 chrX_16150001 RAL-365 1564 chrX 19710074 19710092 chrX 19711860 19711878 S-element 5 1786 2.0 2.0 2.0 1.7 1804 chrX 19710074 intron meso18E - chrX 19710976 intron meso18E - chrX 19711878 intron meso18E - chrX_5_19710001 chrX_19710001 RAL-365 1565 chrX 19755521 19755544 chrX 19755606 19755629 6 84 3.0 1.5 2.2 1.9 108 chrX 19755521 intron Pmp70 + chrX 19755575 intron Pmp70 + chrX 19755629 intron Pmp70 + chrX_6_19755001 chrX_19755001 RAL-365 1566 chrX 19897379 19897405 chrX 19897456 19897481 5 77 1.0 1.5 1.2 2.3 102 chrX 19897379 intron Hers + chrX 19897430 intron Hers + chrX 19897481 intron Hers + chrX_5_19895001 chrX_19895001 RAL-365 1567 chrX 20041532 20041565 chrX 20041610 20041645 5 80 0.5 0.0 0.2 4.2 113 chrX 20041532 intron Dop2R - chrX 20041588 intron Dop2R - chrX 20041645 intron Dop2R - chrX_5_20040001 chrX_20040001 RAL-365 1568 chrX 20090083 20090108 chrX 20090170 20090195 8 87 1.0 5.0 3.0 2.0 112 chrX 20090083 intergenic not near genes chrX 20090139 intergenic not near genes chrX 20090195 intergenic CR45628 + chrX_8_20090001 chrX_20090001 RAL-365 1569 chrX 20312892 20312909 chrX 20312970 20312987 4 78 0.0 2.5 1.2 1.8 95 chrX 20312892 intron CG1504 - chrX 20312940 intron CG1504 - chrX 20312987 intron CG1504 - chrX_4_20310001 chrX_20310001 RAL-365 1570 chrX 20317785 20317801 chrX 20317868 20317884 7 83 2.0 6.0 4.0 1.4 99 chrX 20317785 intron CG1504 - chrX 20317834 intron CG1504 - chrX 20317884 intron CG1504 - chrX_7_20315001 chrX_20315001 RAL-365 1571 chrX 20377327 20377348 chrX 20378794 20378815 hobo 6 1466 3.5 4.0 3.8 1.2 1488 chrX 20377327 intergenic not near genes chrX 20378071 intergenic not near genes chrX 20378815 intergenic not near genes chrX_6_20375001 chrX_20375001 RAL-365 1572 chrX 20426178 20426201 chrX 20428372 20428397 4 2195 16.5 10.0 13.2 0.3 2219 chrX 20426178 exon cactin + chrX 20427288 intergenic CG11710 -,CG15456 - chrX 20428397 exon CG11710 - chrX_4_20425001 chrX_20425001 RAL-365 1573 chrX 20503174 20503198 chrX 20503271 20503295 4 97 1.0 2.0 1.5 1.6 121 chrX 20503174 intron RhoGAP19D - chrX 20503234 intron RhoGAP19D - chrX 20503295 intron RhoGAP19D - chrX_4_20500001 chrX_20500001 RAL-365 1574 chrX 20504137 20504156 chrX 20505656 20505677 transib2 5 1520 3.0 1.5 2.2 1.6 1540 chrX 20504137 intron RhoGAP19D - chrX 20504907 intron RhoGAP19D - chrX 20505677 intron RhoGAP19D - chrX_5_20500001 chrX_20500001 RAL-365 1575 chrX 20575156 20575183 chrX 20575233 20575260 9 78 0.5 1.5 1.0 4.5 104 chrX 20575156 intergenic CG42580 + chrX 20575208 intergenic not near genes chrX 20575260 intergenic not near genes chrX_9_20575001 chrX_20575001 RAL-365 1576 chrX 20594301 20594322 chrX 20594387 20594408 5 85 3.5 1.0 2.2 1.6 107 chrX 20594301 intron RunxA - chrX 20594354 intron RunxA - chrX 20594408 intron RunxA - chrX_5_20590001 chrX_20590001 RAL-365 1577 chrX 20940721 20940756 chrX 20942190 20942224 hobo 12 1468 0.5 2.0 1.2 5.5 1503 chrX 20940721 intergenic not near genes chrX 20941472 intergenic not near genes chrX 20942224 intergenic not near genes chrX_12_20940001 chrX_20940001 RAL-365 1578 chrX 20956985 20956996 chrX 20962427 20962438 I-element 4 5442 2.5 0.5 1.5 1.6 5453 chrX 20956985 intergenic not near genes chrX 20959712 intergenic not near genes chrX 20962438 intergenic Ser6 - chrX_4_20955001 chrX_20955001 RAL-365 1579 chrX 21086136 21086161 chrX 21087165 21087190 jockey 6 1029 2.5 1.5 2.0 2.0 1054 chrX 21086136 intergenic not near genes chrX 21086663 intergenic not near genes chrX 21087190 intergenic not near genes chrX_6_21085001 chrX_21085001 RAL-365 1580 chrX 21264730 21264762 chrX 21264806 21264837 4 75 1.0 0.5 0.8 2.2 107 chrX 21264730 intron CG32521 - chrX 21264784 intron CG32521 - chrX 21264837 intron CG32521 - chrX_4_21260001 chrX_21260001 RAL-365 1581 chrX 21458692 21458725 chrX 21464128 21464161 Ivk 8 5436 0.0 0.5 0.2 6.7 5469 chrX 21458692 intergenic not near genes chrX 21461426 intergenic not near genes chrX 21464161 intergenic not near genes chrX_8_21460001 chrX_21460001 RAL-365 1582 chrX 21474408 21474429 chrX 21474774 21474795 1731 7 366 1.5 0.5 1.0 3.5 387 chrX 21474408 intergenic not near genes chrX 21474602 intergenic not near genes chrX 21474795 intergenic not near genes chrX_7_21470001 chrX_21470001 RAL-365 1583 chrX 21516988 21517021 chrX 21517067 21517100 7 79 0.5 2.5 1.5 2.8 112 chrX 21516988 intron CR45082 - chrX 21517044 intron CR45082 - chrX 21517100 intron CR45082 - chrX_7_21515001 chrX_21515001 RAL-365 1584 chrX 22564558 22564573 chrX 22575130 22575145 jockey 6 10572 5.0 4.0 4.5 1.1 10587 chrX 22564558 intergenic not near genes chrX 22569852 intergenic not near genes chrX 22575145 intergenic not near genes chrX_6_22565001 chrX_22565001 RAL-365 1585 chrX 22697497 22697523 chrX 22701794 22701820 Juan 5 4297 3.0 3.5 3.2 1.2 4323 chrX 22697497 intron CR44997 + chrX 22699658 intron CR44997 + chrX 22701820 intron CR44997 + chrX_5_22695001 chrX_22695001 RAL-365 1586 chrX 22784080 22784104 chrX 22784162 22784187 7 83 0.5 1.0 0.8 3.9 107 chrX 22784080 intron CR44997 + chrX 22784134 intron CR44997 + chrX 22784187 intron CR44997 + chrX_7_22780001 chrX_22780001 RAL-365 1587 chrX 22824233 22824426 chrX 22824359 22824559 4 128 3.0 3.0 3.0 1.0 326 chrX 22824233 intergenic fog - chrX 22824396 3` UTR fog - chrX 22824559 3` UTR fog - chrX_4_22820001 chrX_22820001 RAL-365 1588 chrX 22867979 22868004 chrX 22868092 22868118 8 114 3.5 0.0 1.8 2.9 139 chrX 22867979 exon CG42346 + chrX 22868048 intron CG42346 + chrX 22868118 intron CG42346 + chrX_8_22865001 chrX_22865001 RAL-365 1589 chrX 22895727 22895760 chrX 22895845 22895877 7 118 1.0 1.0 1.0 3.5 150 chrX 22895727 intergenic not near genes chrX 22895802 intergenic not near genes chrX 22895877 intergenic not near genes chrX_7_22895001 chrX_22895001 RAL-365 1590 chrY 975798 975817 chrY 975878 975923 5 95 68.5 77.5 73.0 0.1 125 chrY 975798 intergenic not near genes chrY 975860 intergenic not near genes chrY 975923 intergenic not near genes chrY_5_975001 chrY_975001 RAL-365