SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 47430 47458 chr2L 52585 52613 jockey 11 5155 14.5 17.0 15.8 0.7 5183 chr2L 47430 intron Cda5 - chr2L 50022 intron Cda5 - chr2L 52613 intron Cda5 - chr2L_11_50001 chr2L_50001 RAL-361 2 chr2L 47463 47474 chr2L 52577 52629 jockey 5 5147 10.5 15.0 12.8 0.4 5166 chr2L 47463 intron Cda5 - chr2L 50046 intron Cda5 - chr2L 52629 intron Cda5 - chr2L_5_50001 chr2L_50001 RAL-361 3 chr2L 73738 73813 chr2L 73897 73972 33 157 6.5 6.5 6.5 4.4 234 chr2L 73738 intron,intron CR44987 -,galectin + chr2L 73855 intron galectin + chr2L 73972 intron galectin + chr2L_33_70001 chr2L_70001 RAL-361 4 chr2L 229735 229747 chr2L 230156 230165 9 419 68.5 68.0 68.2 0.1 430 chr2L 229735 intron kis - chr2L 229950 intron kis - chr2L 230165 intron kis - chr2L_9_225001 chr2L_225001 RAL-361 5 chr2L 229733 229782 chr2L 230167 230230 34 425 80.0 65.5 72.8 0.5 497 chr2L 229733 intron kis - chr2L 229982 intron kis - chr2L 230230 intron kis - chr2L_34_225001 chr2L_225001 RAL-361 6 chr2L 242452 242520 chr2L 242740 242810 29 289 8.5 10.5 9.5 2.8 358 chr2L 242452 5` UTR kis - chr2L 242631 5` UTR kis - chr2L 242810 intron kis - chr2L_29_240001 chr2L_240001 RAL-361 7 chr2L 325099 325142 chr2L 325226 325269 22 124 10.5 15.5 13.0 1.6 170 chr2L 325099 intron Plc21C + chr2L 325184 intron Plc21C + chr2L 325269 intron Plc21C + chr2L_22_325001 chr2L_325001 RAL-361 8 chr2L 347845 347912 chr2L 355395 355462 blood 27 7548 6.0 7.0 6.5 3.6 7617 chr2L 347845 3` UTR Plc21C + chr2L 351654 intron Plc21C + chr2L 355462 3` UTR Plc21C + chr2L_27_350001 chr2L_350001 RAL-361 9 chr2L 371396 371455 chr2L 371525 371584 23 129 3.0 11.5 7.2 2.8 188 chr2L 371396 intergenic not near genes chr2L 371490 intergenic not near genes chr2L 371584 intergenic not near genes chr2L_23_370001 chr2L_370001 RAL-361 10 chr2L 407902 407913 chr2L 408033 408044 6 131 17.0 9.5 13.2 0.4 142 chr2L 407902 3` UTR RpI135 + chr2L 407973 intergenic RpI135 +,AP-2alpha - chr2L 408044 3` UTR AP-2alpha - chr2L_6_405001 chr2L_405001 RAL-361 11 chr2L 407914 407973 chr2L 408030 408104 17 130 5.5 9.5 7.5 2.0 190 chr2L 407914 3` UTR RpI135 + chr2L 408009 intergenic AP-2alpha -,RpI135 + chr2L 408104 3` UTR AP-2alpha - chr2L_17_405001 chr2L_405001 RAL-361 12 chr2L 418197 418272 chr2L 418352 418427 36 153 7.5 7.5 7.5 4.2 230 chr2L 418197 3` UTR ebi + chr2L 418312 3` UTR ebi + chr2L 418427 3` UTR ebi + chr2L_36_415001 chr2L_415001 RAL-361 13 chr2L 458847 458922 chr2L 458974 459049 31 125 8.0 8.5 8.2 3.4 202 chr2L 458847 intergenic CG4297 -,CG4133 + chr2L 458948 3` UTR CG4297 - chr2L 459049 3` UTR CG4297 - chr2L_31_455001 chr2L_455001 RAL-361 14 chr2L 529029 529125 chr2L 529179 529260 20 146 1.0 8.0 4.5 3.6 231 chr2L 529029 intron ush + chr2L 529144 intron ush + chr2L 529260 intron ush + chr2L_20_525001 chr2L_525001 RAL-361 15 chr2L 630266 630335 chr2L 630408 630473 21 139 7.0 5.0 6.0 3.0 207 chr2L 630266 intergenic not near genes chr2L 630370 intergenic not near genes chr2L 630473 intergenic not near genes chr2L_21_630001 chr2L_630001 RAL-361 16 chr2L 680684 680712 chr2L 680892 680920 15 208 8.5 9.5 9.0 1.5 236 chr2L 680684 intron ds - chr2L 680802 intron ds - chr2L 680920 intron ds - chr2L_15_680001 chr2L_680001 RAL-361 17 chr2L 686912 686939 chr2L 696002 696029 roo 20 9090 11.0 17.5 14.2 1.3 9117 chr2L 686912 intron ds - chr2L 691470 intron ds - chr2L 696029 intron ds - chr2L_20_690001 chr2L_690001 RAL-361 18 chr2L 725686 725759 chr2L 725816 725891 12 129 4.5 4.5 4.5 2.2 205 chr2L 725686 intergenic not near genes chr2L 725788 intergenic not near genes chr2L 725891 intergenic not near genes chr2L_12_725001 chr2L_725001 RAL-361 19 chr2L 770423 770461 chr2L 772254 772292 Bari1 12 1831 14.0 10.0 12.0 0.9 1869 chr2L 770423 intergenic not near genes chr2L 771358 intergenic not near genes chr2L 772292 intergenic CR44614 + chr2L_12_770001 chr2L_770001 RAL-361 20 chr2L 770462 770492 chr2L 772252 772303 Bari1 5 1819 7.5 9.0 8.2 0.5 1841 chr2L 770462 intergenic not near genes chr2L 771382 intergenic not near genes chr2L 772303 intergenic CR44614 + chr2L_5_770001 chr2L_770001 RAL-361 21 chr2L 850778 850845 chr2L 850913 850980 7 133 8.5 8.0 8.2 0.8 202 chr2L 850778 5` UTR,5` UTR drongo -,CR44060 + chr2L 850879 5` UTR,5` UTR drongo -,CR44060 + chr2L 850980 5` UTR,5` UTR drongo -,CR44060 + chr2L_7_850001 chr2L_850001 RAL-361 22 chr2L 877799 877875 chr2L 877930 877984 26 126 4.0 7.0 5.5 4.0 185 chr2L 877799 3` UTR,exon CG15824 -,ninaA + chr2L 877892 3` UTR,intron CG15824 -,ninaA + chr2L 877984 3` UTR,exon CG15824 -,ninaA + chr2L_26_875001 chr2L_875001 RAL-361 23 chr2L 885608 885685 chr2L 885738 885772 34 127 11.0 6.0 8.5 3.6 164 chr2L 885608 intergenic CG15824 - chr2L 885690 intergenic not near genes chr2L 885772 intergenic not near genes chr2L_34_885001 chr2L_885001 RAL-361 24 chr2L 890323 890334 chr2L 890454 890465 11 131 10.5 7.5 9.0 1.1 142 chr2L 890323 intergenic not near genes chr2L 890394 intergenic not near genes chr2L 890465 intergenic not near genes chr2L_11_890001 chr2L_890001 RAL-361 25 chr2L 902591 902654 chr2L 902972 903035 11 379 9.0 3.5 6.2 1.5 444 chr2L 902591 intergenic not near genes chr2L 902813 intergenic not near genes chr2L 903035 intergenic not near genes chr2L_11_900001 chr2L_900001 RAL-361 26 chr2L 902655 902668 chr2L 902969 903049 7 365 6.0 3.5 4.8 1.2 394 chr2L 902655 intergenic not near genes chr2L 902852 intergenic not near genes chr2L 903049 intergenic not near genes chr2L_7_900001 chr2L_900001 RAL-361 27 chr2L 920975 921034 chr2L 921107 921170 25 135 0.0 8.0 4.0 5.0 195 chr2L 920975 intergenic not near genes chr2L 921072 intergenic not near genes chr2L 921170 intergenic not near genes chr2L_25_920001 chr2L_920001 RAL-361 28 chr2L 922417 922491 chr2L 922548 922622 34 131 12.0 10.5 11.2 2.8 205 chr2L 922417 intergenic CG4341 + chr2L 922520 intergenic CG4341 + chr2L 922622 intergenic CG4341 + chr2L_34_920001 chr2L_920001 RAL-361 29 chr2L 929490 929560 chr2L 929650 929720 30 155 9.0 6.0 7.5 3.5 230 chr2L 929490 intron CG4341 + chr2L 929605 intron CG4341 + chr2L 929720 intron CG4341 + chr2L_30_925001 chr2L_925001 RAL-361 30 chr2L 931585 931659 chr2L 931714 931788 15 129 8.0 8.5 8.2 1.6 203 chr2L 931585 intron CG4341 + chr2L 931686 intron CG4341 + chr2L 931788 intron CG4341 + chr2L_15_930001 chr2L_930001 RAL-361 31 chr2L 935920 935975 chr2L 936049 936104 13 129 8.5 10.5 9.5 1.2 184 chr2L 935920 intron CG4341 + chr2L 936012 intron CG4341 + chr2L 936104 intron CG4341 + chr2L_13_935001 chr2L_935001 RAL-361 32 chr2L 975158 975225 chr2L 975343 975415 6 185 1.0 1.5 1.2 2.7 257 chr2L 975158 intergenic not near genes chr2L 975286 intergenic not near genes chr2L 975415 intergenic not near genes chr2L_6_975001 chr2L_975001 RAL-361 33 chr2L 976831 976911 chr2L 984517 984597 roo 33 7686 11.5 7.0 9.2 3.2 7766 chr2L 976831 intergenic not near genes chr2L 980714 intergenic not near genes chr2L 984597 intergenic not near genes chr2L_33_980001 chr2L_980001 RAL-361 34 chr2L 996673 996747 chr2L 1005818 1005893 roo 20 9144 6.0 7.5 6.8 2.6 9220 chr2L 996673 intergenic not near genes chr2L 1001283 intergenic not near genes chr2L 1005893 intergenic not near genes chr2L_20_1000001 chr2L_1000001 RAL-361 35 chr2L 1006829 1006847 chr2L 1006971 1006989 13 142 8.5 0.0 4.2 2.5 160 chr2L 1006829 intergenic not near genes chr2L 1006909 intergenic not near genes chr2L 1006989 intergenic not near genes chr2L_13_1005001 chr2L_1005001 RAL-361 36 chr2L 1025073 1025121 chr2L 1025203 1025251 17 126 16.5 8.5 12.5 1.3 178 chr2L 1025073 intron IA-2 - chr2L 1025162 intron IA-2 - chr2L 1025251 intron IA-2 - chr2L_17_1025001 chr2L_1025001 RAL-361 37 chr2L 1026149 1026177 chr2L 1026275 1026303 13 125 16.5 6.5 11.5 1.0 154 chr2L 1026149 intron,3` UTR IA-2 -,CG4375 - chr2L 1026226 intron,3` UTR IA-2 -,CG4375 - chr2L 1026303 intron,exon IA-2 -,CG4375 - chr2L_13_1025001 chr2L_1025001 RAL-361 38 chr2L 1036421 1036486 chr2L 1036566 1036636 7 146 0.0 6.5 3.2 1.7 215 chr2L 1036421 intron IA-2 - chr2L 1036528 intron IA-2 - chr2L 1036636 intron IA-2 - chr2L_7_1035001 chr2L_1035001 RAL-361 39 chr2L 1042575 1042583 chr2L 1042702 1042710 9 127 2.0 0.0 1.0 4.5 135 chr2L 1042575 intron IA-2 - chr2L 1042642 intron IA-2 - chr2L 1042710 intron IA-2 - chr2L_9_1040001 chr2L_1040001 RAL-361 40 chr2L 1066044 1066116 chr2L 1066174 1066247 36 130 11.0 7.5 9.2 3.5 203 chr2L 1066044 intron S - chr2L 1066146 intron S - chr2L 1066247 intron S - chr2L_36_1065001 chr2L_1065001 RAL-361 41 chr2L 1122305 1122373 chr2L 1122453 1122533 24 151 6.0 5.5 5.8 3.5 228 chr2L 1122305 intron Pino - chr2L 1122419 intron Pino - chr2L 1122533 intron Pino - chr2L_24_1120001 chr2L_1120001 RAL-361 42 chr2L 1156818 1156892 chr2L 1156973 1157047 33 153 10.5 11.5 11.0 2.8 229 chr2L 1156818 intron capt - chr2L 1156932 intron capt - chr2L 1157047 intron capt - chr2L_33_1155001 chr2L_1155001 RAL-361 43 chr2L 1199858 1199862 chr2L 1200016 1200020 4 158 0.5 20.5 10.5 0.3 162 chr2L 1199858 3` UTR CG43348 + chr2L 1199939 intergenic CG43348 +,CG43349 + chr2L 1200020 intergenic CG43348 +,CG43349 + chr2L_4_1195001 chr2L_1195001 RAL-361 44 chr2L 1220084 1220155 chr2L 1227600 1227671 blood 29 7515 12.0 9.5 10.8 2.5 7587 chr2L 1220084 intron CG42329 + chr2L 1223878 intron CG42329 + chr2L 1227671 intron CG42329 + chr2L_29_1220001 chr2L_1220001 RAL-361 45 chr2L 1321980 1322051 chr2L 1322119 1322190 32 137 9.0 8.0 8.5 3.4 210 chr2L 1321980 intergenic not near genes chr2L 1322085 intergenic not near genes chr2L 1322190 intergenic not near genes chr2L_32_1320001 chr2L_1320001 RAL-361 46 chr2L 1346335 1346351 chr2L 1346462 1346478 4 127 0.0 13.0 6.5 0.5 143 chr2L 1346335 intergenic CR45006 -,CR45005 - chr2L 1346406 intergenic CR45006 - chr2L 1346478 intergenic CR45006 - chr2L_4_1345001 chr2L_1345001 RAL-361 47 chr2L 1570647 1570709 chr2L 1573569 1573631 F-element 27 2922 7.0 5.5 6.2 3.8 2984 chr2L 1570647 intron haf + chr2L 1572139 intron haf + chr2L 1573631 intron haf + chr2L_27_1570001 chr2L_1570001 RAL-361 48 chr2L 1580267 1580335 chr2L 1580525 1580593 20 258 0.0 7.5 3.8 4.2 326 chr2L 1580267 intron haf + chr2L 1580430 intron haf + chr2L 1580593 intron haf + chr2L_20_1580001 chr2L_1580001 RAL-361 49 chr2L 1590597 1590668 chr2L 1590739 1590811 37 143 9.5 11.0 10.2 3.3 214 chr2L 1590597 intron haf + chr2L 1590704 intron haf + chr2L 1590811 intron haf + chr2L_37_1590001 chr2L_1590001 RAL-361 50 chr2L 1590910 1590989 chr2L 1591036 1591065 24 122 13.5 8.0 10.8 2.0 155 chr2L 1590910 intron haf + chr2L 1590988 intron haf + chr2L 1591065 intron haf + chr2L_24_1590001 chr2L_1590001 RAL-361 51 chr2L 1634726 1634763 chr2L 1634854 1634904 12 140 7.0 10.5 8.8 1.2 178 chr2L 1634726 intergenic not near genes chr2L 1634815 intergenic not near genes chr2L 1634904 intergenic not near genes chr2L_12_1630001 chr2L_1630001 RAL-361 52 chr2L 1661971 1662035 chr2L 1662106 1662163 24 136 6.0 4.0 5.0 4.0 192 chr2L 1661971 intron chinmo + chr2L 1662067 intron chinmo + chr2L 1662163 intron chinmo + chr2L_24_1660001 chr2L_1660001 RAL-361 53 chr2L 1678908 1678999 chr2L 1686441 1686514 blood 23 7531 0.0 10.0 5.0 3.8 7606 chr2L 1678908 intron chinmo + chr2L 1682711 intron chinmo + chr2L 1686514 intron chinmo + chr2L_23_1680001 chr2L_1680001 RAL-361 54 chr2L 1711312 1711380 chr2L 1711686 1711754 mdg3 33 371 7.0 9.5 8.2 3.6 442 chr2L 1711312 3` UTR,3` UTR mRpL48 +,frtz - chr2L 1711533 3` UTR frtz - chr2L 1711754 exon frtz - chr2L_33_1710001 chr2L_1710001 RAL-361 55 chr2L 1814363 1814377 chr2L 1814499 1814513 10 136 50.0 39.5 44.8 0.2 150 chr2L 1814363 intergenic not near genes chr2L 1814438 intergenic not near genes chr2L 1814513 intergenic not near genes chr2L_10_1810001 chr2L_1810001 RAL-361 56 chr2L 1879527 1879570 chr2L 1879715 1879758 18 188 2.0 8.0 5.0 3.0 231 chr2L 1879527 intron CG31663 - chr2L 1879642 intron CG31663 - chr2L 1879758 intron CG31663 - chr2L_18_1875001 chr2L_1875001 RAL-361 57 chr2L 1883373 1883446 chr2L 1883999 1884068 7 627 0.0 3.0 1.5 2.8 695 chr2L 1883373 intron CG15358 - chr2L 1883720 intron CG15358 - chr2L 1884068 intergenic CG15358 - chr2L_7_1880001 chr2L_1880001 RAL-361 58 chr2L 1891109 1891127 chr2L 1891238 1891256 10 129 15.5 3.0 9.2 1.0 147 chr2L 1891109 intron CG7337 + chr2L 1891182 intron CG7337 + chr2L 1891256 intron CG7337 + chr2L_10_1890001 chr2L_1890001 RAL-361 59 chr2L 1993152 1993162 chr2L 1993287 1993298 6 135 18.0 8.0 13.0 0.4 146 chr2L 1993152 intergenic not near genes chr2L 1993225 intergenic not near genes chr2L 1993298 intergenic not near genes chr2L_6_1990001 chr2L_1990001 RAL-361 60 chr2L 1993166 1993225 chr2L 1993281 1993297 21 127 6.5 7.0 6.8 2.7 131 chr2L 1993166 intergenic not near genes chr2L 1993232 intergenic not near genes chr2L 1993297 intergenic not near genes chr2L_21_1990001 chr2L_1990001 RAL-361 61 chr2L 2000669 2000738 chr2L 2000826 2000908 19 164 53.0 60.0 56.5 0.3 239 chr2L 2000669 intron,5` UTR CG33543 -,CR43464 + chr2L 2000788 intron,5` UTR CG33543 -,CR43464 + chr2L 2000908 intron,5` UTR CG33543 -,CR43464 + chr2L_19_2000001 chr2L_2000001 RAL-361 62 chr2L 2049170 2049240 chr2L 2049299 2049374 31 131 1.0 8.0 4.5 5.6 204 chr2L 2049170 intergenic not near genes chr2L 2049272 intergenic not near genes chr2L 2049374 intergenic not near genes chr2L_31_2045001 chr2L_2045001 RAL-361 63 chr2L 2073301 2073320 chr2L 2073434 2073453 10 133 22.5 13.5 18.0 0.5 152 chr2L 2073301 intron dpr3 - chr2L 2073377 intron dpr3 - chr2L 2073453 intron dpr3 - chr2L_10_2070001 chr2L_2070001 RAL-361 64 chr2L 2073324 2073356 chr2L 2073432 2073462 6 117 13.5 13.5 13.5 0.4 138 chr2L 2073324 intron dpr3 - chr2L 2073393 intron dpr3 - chr2L 2073462 intron dpr3 - chr2L_6_2070001 chr2L_2070001 RAL-361 65 chr2L 2075344 2075366 chr2L 2075488 2075510 9 144 9.0 12.0 10.5 0.8 166 chr2L 2075344 intron dpr3 - chr2L 2075427 intron dpr3 - chr2L 2075510 intron dpr3 - chr2L_9_2075001 chr2L_2075001 RAL-361 66 chr2L 2100384 2100399 chr2L 2109551 2109600 roo 4 9181 11.0 14.0 12.5 0.3 9216 chr2L 2100384 intron dpr3 - chr2L 2104992 intron dpr3 - chr2L 2109600 intron dpr3 - chr2L_4_2100001 chr2L_2100001 RAL-361 67 chr2L 2112064 2112136 chr2L 2119776 2119835 opus 9 7704 3.0 5.0 4.0 1.8 7771 chr2L 2112064 intergenic not near genes chr2L 2115950 intergenic not near genes chr2L 2119835 intergenic not near genes chr2L_9_2115001 chr2L_2115001 RAL-361 68 chr2L 2256400 2256473 chr2L 2256530 2256603 11 130 6.5 5.5 6.0 1.6 203 chr2L 2256400 intergenic not near genes chr2L 2256502 intergenic not near genes chr2L 2256603 intergenic not near genes chr2L_11_2255001 chr2L_2255001 RAL-361 69 chr2L 2262267 2262341 chr2L 2262385 2262468 29 124 6.5 6.5 6.5 3.9 201 chr2L 2262267 intergenic not near genes chr2L 2262368 intergenic not near genes chr2L 2262468 intergenic not near genes chr2L_29_2260001 chr2L_2260001 RAL-361 70 chr2L 2278334 2278401 chr2L 2278587 2278633 17 246 9.0 11.5 10.2 1.5 299 chr2L 2278334 intron CR43753 - chr2L 2278484 intron CR43753 - chr2L 2278633 intron CR43753 - chr2L_17_2275001 chr2L_2275001 RAL-361 71 chr2L 2294018 2294069 chr2L 2299248 2299309 copia 15 5235 8.5 9.0 8.8 1.5 5291 chr2L 2294018 intergenic not near genes chr2L 2296664 intergenic not near genes chr2L 2299309 intergenic not near genes chr2L_15_2295001 chr2L_2295001 RAL-361 72 chr2L 2302010 2302075 chr2L 2302142 2302207 23 128 6.5 8.0 7.2 2.8 197 chr2L 2302010 intergenic not near genes chr2L 2302108 intergenic not near genes chr2L 2302207 intergenic not near genes chr2L_23_2300001 chr2L_2300001 RAL-361 73 chr2L 2311022 2311091 chr2L 2311168 2311237 15 145 5.0 2.5 3.8 3.1 215 chr2L 2311022 intron CG9967 - chr2L 2311130 intron CG9967 - chr2L 2311237 intron CG9967 - chr2L_15_2310001 chr2L_2310001 RAL-361 74 chr2L 2317071 2317112 chr2L 2317292 2317333 19 221 54.5 39.5 47.0 0.4 262 chr2L 2317071 intron,intron CG9967 -,eys + chr2L 2317202 intron,intron CG9967 -,eys + chr2L 2317333 intron,intron CG9967 -,eys + chr2L_19_2315001 chr2L_2315001 RAL-361 75 chr2L 2317588 2317821 chr2L 2317715 2317947 18 116 9.5 37.5 23.5 0.7 359 chr2L 2317588 intron,intron CG9967 -,eys + chr2L 2317768 intron,intron CG9967 -,eys + chr2L 2317947 intron,intron CG9967 -,eys + chr2L_18_2315001 chr2L_2315001 RAL-361 76 chr2L 2321651 2321698 chr2L 2321761 2321828 24 126 7.0 11.0 9.0 2.4 177 chr2L 2321651 intron,intron CG9967 -,eys + chr2L 2321740 intron,intron CG9967 -,eys + chr2L 2321828 intron,intron CG9967 -,eys + chr2L_24_2320001 chr2L_2320001 RAL-361 77 chr2L 2372317 2372368 chr2L 2372453 2372504 11 136 11.0 7.5 9.2 1.1 187 chr2L 2372317 intergenic CG3609 - chr2L 2372410 intergenic CG3609 - chr2L 2372504 3` UTR CG3609 - chr2L_11_2370001 chr2L_2370001 RAL-361 78 chr2L 2396246 2396289 chr2L 2396374 2396417 17 128 9.0 6.0 7.5 2.0 171 chr2L 2396246 intron VGlut + chr2L 2396332 intron VGlut + chr2L 2396417 intron VGlut + chr2L_17_2395001 chr2L_2395001 RAL-361 79 chr2L 2463800 2463814 chr2L 2464195 2464209 5 395 19.0 8.5 13.8 0.3 409 chr2L 2463800 intergenic not near genes chr2L 2464004 intergenic not near genes chr2L 2464209 intergenic not near genes chr2L_5_2460001 chr2L_2460001 RAL-361 80 chr2L 2463815 2463865 chr2L 2464193 2464260 30 394 8.0 8.5 8.2 3.3 445 chr2L 2463815 intergenic not near genes chr2L 2464038 intergenic not near genes chr2L 2464260 intergenic not near genes chr2L_30_2460001 chr2L_2460001 RAL-361 81 chr2L 2497596 2497615 chr2L 2497722 2497741 8 126 7.5 14.0 10.8 0.7 145 chr2L 2497596 3` UTR oaf + chr2L 2497668 3` UTR oaf + chr2L 2497741 3` UTR oaf + chr2L_8_2495001 chr2L_2495001 RAL-361 82 chr2L 2547965 2548021 chr2L 2549123 2549179 22 1159 7.0 65.0 36.0 0.6 1214 chr2L 2547965 intergenic not near genes chr2L 2548572 intergenic not near genes chr2L 2549179 intergenic not near genes chr2L_22_2545001 chr2L_2545001 RAL-361 83 chr2L 2557132 2557215 chr2L 2557262 2557341 11 127 2.5 8.5 5.5 1.7 209 chr2L 2557132 intergenic not near genes chr2L 2557236 intergenic not near genes chr2L 2557341 intergenic not near genes chr2L_11_2555001 chr2L_2555001 RAL-361 84 chr2L 2560015 2560088 chr2L 2560155 2560178 26 130 6.5 8.0 7.2 3.2 163 chr2L 2560015 intergenic not near genes chr2L 2560096 intergenic not near genes chr2L 2560178 intergenic not near genes chr2L_26_2560001 chr2L_2560001 RAL-361 85 chr2L 2565511 2565523 chr2L 2571634 2571646 297 8 6123 14.0 12.0 13.0 0.6 6135 chr2L 2565511 exon Cyp309a2 - chr2L 2568578 intron Cyp309a2 - chr2L 2571646 intron Cyp309a2 - chr2L_8_2565001 chr2L_2565001 RAL-361 86 chr2L 2565528 2565563 chr2L 2571633 2571686 297 14 6122 6.5 12.0 9.2 1.4 6158 chr2L 2565528 exon Cyp309a2 - chr2L 2568607 intron Cyp309a2 - chr2L 2571686 exon Cyp309a2 - chr2L_14_2565001 chr2L_2565001 RAL-361 87 chr2L 2587780 2587840 chr2L 2587894 2587969 26 119 6.5 7.5 7.0 3.2 189 chr2L 2587780 intergenic not near genes chr2L 2587874 intergenic not near genes chr2L 2587969 intergenic not near genes chr2L_26_2585001 chr2L_2585001 RAL-361 88 chr2L 2661165 2661187 chr2L 2663052 2663075 I-element 8 1884 13.0 9.5 11.2 0.7 1910 chr2L 2661165 intergenic not near genes chr2L 2662120 intergenic not near genes chr2L 2663075 intergenic not near genes chr2L_8_2660001 chr2L_2660001 RAL-361 89 chr2L 2661194 2661209 chr2L 2663042 2663086 I-element 6 1870 8.0 7.0 7.5 0.7 1892 chr2L 2661194 intergenic not near genes chr2L 2662140 intergenic not near genes chr2L 2663086 intergenic not near genes chr2L_6_2660001 chr2L_2660001 RAL-361 90 chr2L 2661221 2661223 chr2L 2663034 2663099 I-element 6 1848 6.5 6.5 6.5 0.8 1878 chr2L 2661221 intergenic not near genes chr2L 2662160 intergenic not near genes chr2L 2663099 intergenic not near genes chr2L_6_2660001 chr2L_2660001 RAL-361 91 chr2L 2667588 2667622 chr2L 2667712 2667751 12 128 10.5 7.0 8.8 1.2 163 chr2L 2667588 intergenic not near genes chr2L 2667670 intergenic not near genes chr2L 2667751 intergenic not near genes chr2L_12_2665001 chr2L_2665001 RAL-361 92 chr2L 2667637 2667653 chr2L 2667709 2667782 6 106 9.0 7.0 8.0 0.7 145 chr2L 2667637 intergenic not near genes chr2L 2667710 intergenic not near genes chr2L 2667782 intergenic not near genes chr2L_6_2665001 chr2L_2665001 RAL-361 93 chr2L 2698806 2698891 chr2L 2698954 2699003 22 134 0.0 4.0 2.0 7.3 197 chr2L 2698806 intron CG31690 + chr2L 2698904 intron CG31690 + chr2L 2699003 intron CG31690 + chr2L_22_2695001 chr2L_2695001 RAL-361 94 chr2L 2702932 2703008 chr2L 2703183 2703211 23 235 8.5 6.5 7.5 2.7 279 chr2L 2702932 intron CG31690 + chr2L 2703072 intron CG31690 + chr2L 2703211 intron CG31690 + chr2L_23_2700001 chr2L_2700001 RAL-361 95 chr2L 2705512 2705580 chr2L 2705803 2705877 20 293 6.5 5.5 6.0 2.9 365 chr2L 2705512 intron CG31690 + chr2L 2705694 intron CG31690 + chr2L 2705877 intron CG31690 + chr2L_20_2705001 chr2L_2705001 RAL-361 96 chr2L 2713476 2713534 chr2L 2713625 2713683 22 146 9.0 12.5 10.8 1.9 207 chr2L 2713476 intron CG31690 + chr2L 2713580 intron CG31690 + chr2L 2713683 intron CG31690 + chr2L_22_2710001 chr2L_2710001 RAL-361 97 chr2L 2772577 2772623 chr2L 2779211 2779223 297 22 6632 11.5 15.5 13.5 1.5 6646 chr2L 2772577 3` UTR Syt1 - chr2L 2775900 intron Syt1 - chr2L 2779223 3` UTR Syt1 - chr2L_22_2775001 chr2L_2775001 RAL-361 98 chr2L 2800558 2800614 chr2L 2800691 2800752 16 133 7.5 0.0 3.8 3.3 194 chr2L 2800558 intergenic not near genes chr2L 2800655 intergenic not near genes chr2L 2800752 intergenic not near genes chr2L_16_2800001 chr2L_2800001 RAL-361 99 chr2L 2830464 2830518 chr2L 2830605 2830659 23 141 7.0 6.5 6.8 2.9 195 chr2L 2830464 intergenic Duox - chr2L 2830562 intergenic Duox - chr2L 2830659 intergenic Duox - chr2L_23_2830001 chr2L_2830001 RAL-361 100 chr2L 2873430 2873437 chr2L 2873558 2873565 8 128 0.0 16.0 8.0 0.9 135 chr2L 2873430 intron CG31694 - chr2L 2873498 intron CG31694 - chr2L 2873565 intron CG31694 - chr2L_8_2870001 chr2L_2870001 RAL-361 101 chr2L 2885323 2885394 chr2L 2885450 2885516 35 126 8.0 10.5 9.2 3.4 193 chr2L 2885323 intron NTPase - chr2L 2885420 intron NTPase - chr2L 2885516 intron NTPase - chr2L_35_2885001 chr2L_2885001 RAL-361 102 chr2L 2927893 2927969 chr2L 2928038 2928106 20 130 0.0 6.0 3.0 5.0 213 chr2L 2927893 intron lilli + chr2L 2928000 intron lilli + chr2L 2928106 intron lilli + chr2L_20_2925001 chr2L_2925001 RAL-361 103 chr2L 2964260 2964305 chr2L 2964389 2964434 17 129 11.0 11.5 11.2 1.4 174 chr2L 2964260 3` UTR Rbp9 + chr2L 2964347 3` UTR Rbp9 + chr2L 2964434 3` UTR Rbp9 + chr2L_17_2960001 chr2L_2960001 RAL-361 104 chr2L 3001112 3001124 chr2L 3001240 3001252 7 128 26.0 11.0 18.5 0.4 140 chr2L 3001112 intron CG17265 + chr2L 3001182 intron CG17265 + chr2L 3001252 intron CG17265 + chr2L_7_3000001 chr2L_3000001 RAL-361 105 chr2L 3072991 3073054 chr2L 3078244 3078307 copia 28 5252 5.0 13.0 9.0 2.8 5316 chr2L 3072991 intron toc - chr2L 3075649 intron toc - chr2L 3078307 intron toc - chr2L_28_3075001 chr2L_3075001 RAL-361 106 chr2L 3108825 3108894 chr2L 3108952 3109021 32 126 9.0 10.0 9.5 3.0 196 chr2L 3108825 exon toc - chr2L 3108923 intron toc - chr2L 3109021 intron toc - chr2L_32_3105001 chr2L_3105001 RAL-361 107 chr2L 3113358 3113433 chr2L 3113510 3113578 20 147 0.5 5.5 3.0 5.0 220 chr2L 3113358 intron toc - chr2L 3113468 intron toc - chr2L 3113578 intron toc - chr2L_20_3110001 chr2L_3110001 RAL-361 108 chr2L 3134262 3134275 chr2L 3134378 3134401 10 125 5.5 17.0 11.2 0.8 139 chr2L 3134262 intron toc - chr2L 3134332 intron toc - chr2L 3134401 intron toc - chr2L_10_3130001 chr2L_3130001 RAL-361 109 chr2L 3134902 3134956 chr2L 3135029 3135083 24 127 9.0 9.5 9.2 2.4 181 chr2L 3134902 intron toc - chr2L 3134992 intron toc - chr2L 3135083 intron toc - chr2L_24_3130001 chr2L_3130001 RAL-361 110 chr2L 3144936 3145000 chr2L 3145068 3145128 34 131 10.0 11.5 10.8 2.9 192 chr2L 3144936 intergenic CG12400 -,toc - chr2L 3145032 3` UTR CG12400 - chr2L 3145128 3` UTR CG12400 - chr2L_34_3145001 chr2L_3145001 RAL-361 111 chr2L 3186428 3186497 chr2L 3186564 3186633 35 136 4.5 8.5 6.5 4.7 205 chr2L 3186428 intron CG34393 - chr2L 3186530 intron CG34393 - chr2L 3186633 intron CG34393 - chr2L_35_3185001 chr2L_3185001 RAL-361 112 chr2L 3202705 3202763 chr2L 3210184 3210242 mdg1 33 7479 10.0 6.0 8.0 3.7 7537 chr2L 3202705 intergenic not near genes chr2L 3206474 intergenic not near genes chr2L 3210242 intergenic CR45336 + chr2L_33_3205001 chr2L_3205001 RAL-361 113 chr2L 3251468 3251520 chr2L 3259083 3259135 springer 20 7615 5.5 15.0 10.2 1.8 7667 chr2L 3251468 intergenic not near genes chr2L 3255302 intergenic not near genes chr2L 3259135 intergenic not near genes chr2L_20_3255001 chr2L_3255001 RAL-361 114 chr2L 3261462 3261511 chr2L 3261604 3261638 26 141 9.0 14.5 11.8 2.0 176 chr2L 3261462 intergenic CR45338 -,CR45337 - chr2L 3261550 intergenic CR45338 -,CR45337 - chr2L 3261638 3` UTR CR45338 - chr2L_26_3260001 chr2L_3260001 RAL-361 115 chr2L 3272920 3272967 chr2L 3273046 3273093 18 126 0.5 3.5 2.0 6.0 173 chr2L 3272920 intergenic not near genes chr2L 3273006 intergenic not near genes chr2L 3273093 intergenic not near genes chr2L_18_3270001 chr2L_3270001 RAL-361 116 chr2L 3291214 3291266 chr2L 3291334 3291396 25 127 10.0 7.5 8.8 2.6 182 chr2L 3291214 intergenic CG9664 - chr2L 3291305 3` UTR CG9664 - chr2L 3291396 3` UTR CG9664 - chr2L_25_3290001 chr2L_3290001 RAL-361 117 chr2L 3314647 3314723 chr2L 3314774 3314850 39 126 12.0 7.5 9.8 3.6 203 chr2L 3314647 intron CG3277 + chr2L 3314748 intron CG3277 + chr2L 3314850 intron CG3277 + chr2L_39_3310001 chr2L_3310001 RAL-361 118 chr2L 3386190 3386196 chr2L 3386348 3386354 4 158 28.0 10.5 19.2 0.2 164 chr2L 3386190 intergenic not near genes chr2L 3386272 intergenic not near genes chr2L 3386354 intergenic not near genes chr2L_4_3385001 chr2L_3385001 RAL-361 119 chr2L 3386197 3386267 chr2L 3386347 3386403 26 153 9.5 10.0 9.8 2.4 206 chr2L 3386197 intergenic not near genes chr2L 3386300 intergenic not near genes chr2L 3386403 intergenic CR45301 - chr2L_26_3385001 chr2L_3385001 RAL-361 120 chr2L 3388558 3388624 chr2L 3388849 3388915 pogo 18 291 6.5 4.0 5.2 2.9 357 chr2L 3388558 intergenic CG42460 - chr2L 3388736 intergenic CG42460 - chr2L 3388915 intergenic CG42460 -,CR44791 + chr2L_18_3385001 chr2L_3385001 RAL-361 121 chr2L 3437096 3437159 chr2L 3437241 3437292 6 141 0.0 7.5 3.8 1.2 196 chr2L 3437096 intergenic not near genes chr2L 3437194 intergenic not near genes chr2L 3437292 intergenic not near genes chr2L_6_3435001 chr2L_3435001 RAL-361 122 chr2L 3489312 3489384 chr2L 3490391 3490464 24 1080 10.0 9.0 9.5 2.3 1152 chr2L 3489312 intron CG15414 - chr2L 3489888 intron CG15414 - chr2L 3490464 intron CG15414 - chr2L_24_3485001 chr2L_3485001 RAL-361 123 chr2L 3497795 3497866 chr2L 3497917 3497994 31 127 8.0 10.5 9.2 3.0 199 chr2L 3497795 intron tim - chr2L 3497894 intron tim - chr2L 3497994 intron tim - chr2L_31_3495001 chr2L_3495001 RAL-361 124 chr2L 3508296 3508372 chr2L 3508424 3508500 22 128 5.0 7.0 6.0 3.1 204 chr2L 3508296 intergenic tim -,CR45299 + chr2L 3508398 intergenic CR45299 +,tim - chr2L 3508500 intergenic CR45299 +,tim - chr2L_22_3505001 chr2L_3505001 RAL-361 125 chr2L 3524744 3524790 chr2L 3524872 3524918 12 128 10.0 5.5 7.8 1.4 174 chr2L 3524744 intergenic CG8852 + chr2L 3524831 intergenic CG8852 + chr2L 3524918 intergenic CG8852 + chr2L_12_3520001 chr2L_3520001 RAL-361 126 chr2L 3556889 3556965 chr2L 3557029 3557070 6 120 0.0 8.5 4.2 1.2 181 chr2L 3556889 intergenic not near genes chr2L 3556980 intergenic not near genes chr2L 3557070 intergenic not near genes chr2L_6_3555001 chr2L_3555001 RAL-361 127 chr2L 3627861 3627910 chr2L 3627999 3628048 25 137 2.0 12.0 7.0 3.1 187 chr2L 3627861 intron for - chr2L 3627954 intron for - chr2L 3628048 intron for - chr2L_25_3625001 chr2L_3625001 RAL-361 128 chr2L 3632241 3632268 chr2L 3632352 3632395 15 122 0.0 0.0 0.0 15.0 154 chr2L 3632241 intron for - chr2L 3632318 intron for - chr2L 3632395 intron for - chr2L_15_3630001 chr2L_3630001 RAL-361 129 chr2L 3643432 3643449 chr2L 3643548 3643557 7 119 15.0 14.5 14.8 0.4 125 chr2L 3643432 intron for - chr2L 3643494 intron for - chr2L 3643557 intron for - chr2L_7_3640001 chr2L_3640001 RAL-361 130 chr2L 3649746 3649812 chr2L 3654999 3655030 copia 23 5251 5.0 13.0 9.0 2.3 5284 chr2L 3649746 intron for - chr2L 3652388 intron for - chr2L 3655030 intron for - chr2L_23_3650001 chr2L_3650001 RAL-361 131 chr2L 3702868 3702909 chr2L 3703004 3703045 25 135 0.0 11.0 5.5 3.8 177 chr2L 3702868 5` UTR CR44311 + chr2L 3702956 intergenic CR44311 + chr2L 3703045 intergenic CR44311 + chr2L_25_3700001 chr2L_3700001 RAL-361 132 chr2L 3702911 3702930 chr2L 3702987 3703066 10 130 0.0 7.0 3.5 2.2 155 chr2L 3702911 5` UTR CR44311 + chr2L 3702988 intergenic CR44311 + chr2L 3703066 intergenic CR44311 + chr2L_10_3700001 chr2L_3700001 RAL-361 133 chr2L 3784755 3784828 chr2L 3785664 3785737 20 909 48.0 46.0 47.0 0.4 982 chr2L 3784755 intergenic CG31960 + chr2L 3785246 exon CG31960 + chr2L 3785737 5` UTR CG31958 + chr2L_20_3785001 chr2L_3785001 RAL-361 134 chr2L 3784702 3784752 chr2L 3785588 3785638 26 889 54.0 48.0 51.0 0.5 936 chr2L 3784702 intergenic CG31960 + chr2L 3785170 exon CG31960 + chr2L 3785638 intergenic CG31960 +,CG31958 + chr2L_26_3785001 chr2L_3785001 RAL-361 135 chr2L 3821028 3821078 chr2L 3821154 3821204 10 126 16.5 0.5 8.5 1.1 176 chr2L 3821028 intergenic not near genes chr2L 3821116 intergenic not near genes chr2L 3821204 intergenic not near genes chr2L_10_3820001 chr2L_3820001 RAL-361 136 chr2L 3836163 3836233 chr2L 3836290 3836361 21 126 10.0 8.0 9.0 2.1 198 chr2L 3836163 intergenic not near genes chr2L 3836262 intergenic not near genes chr2L 3836361 intergenic slp2 + chr2L_21_3835001 chr2L_3835001 RAL-361 137 chr2L 3844297 3844309 chr2L 3844459 3844471 6 162 18.5 10.0 14.2 0.4 174 chr2L 3844297 intergenic not near genes chr2L 3844384 intergenic not near genes chr2L 3844471 intergenic not near genes chr2L_6_3840001 chr2L_3840001 RAL-361 138 chr2L 3862379 3862388 chr2L 3862513 3862522 4 134 8.5 0.0 4.2 0.8 143 chr2L 3862379 intergenic CR44078 -,CG3964 + chr2L 3862450 intergenic CG3964 +,CR44078 - chr2L 3862522 intergenic CG3964 +,CR44078 - chr2L_4_3860001 chr2L_3860001 RAL-361 139 chr2L 3884744 3884811 chr2L 3884871 3884938 32 127 7.0 5.0 6.0 4.6 194 chr2L 3884744 intron capu - chr2L 3884841 intron capu - chr2L 3884938 intron capu - chr2L_32_3880001 chr2L_3880001 RAL-361 140 chr2L 3896266 3896325 chr2L 3896395 3896454 5 129 9.0 0.0 4.5 0.9 188 chr2L 3896266 intron capu - chr2L 3896360 intron capu - chr2L 3896454 intron capu - chr2L_5_3895001 chr2L_3895001 RAL-361 141 chr2L 3908367 3908408 chr2L 3908659 3908717 24 305 0.5 9.0 4.8 4.1 350 chr2L 3908367 intron fred - chr2L 3908542 intron fred - chr2L 3908717 intron fred - chr2L_24_3905001 chr2L_3905001 RAL-361 142 chr2L 3911613 3911677 chr2L 3911741 3911805 16 128 6.5 4.0 5.2 2.6 192 chr2L 3911613 intron fred - chr2L 3911709 intron fred - chr2L 3911805 intron,3` UTR fred -,CG31773 - chr2L_16_3910001 chr2L_3910001 RAL-361 143 chr2L 3936577 3936653 chr2L 3936706 3936783 16 128 8.0 3.5 5.8 2.4 206 chr2L 3936577 intron fred - chr2L 3936680 intron fred - chr2L 3936783 intron fred - chr2L_16_3935001 chr2L_3935001 RAL-361 144 chr2L 4017263 4017331 chr2L 4017398 4017459 27 134 10.0 8.5 9.2 2.6 196 chr2L 4017263 intergenic not near genes chr2L 4017361 intergenic not near genes chr2L 4017459 intergenic not near genes chr2L_27_4015001 chr2L_4015001 RAL-361 145 chr2L 4025299 4025371 chr2L 4025432 4025536 5 159 0.0 0.0 0.0 5.0 237 chr2L 4025299 intergenic not near genes chr2L 4025418 intergenic not near genes chr2L 4025536 intergenic not near genes chr2L_5_4025001 chr2L_4025001 RAL-361 146 chr2L 4037753 4037809 chr2L 4037890 4037946 28 137 6.5 9.0 7.8 3.2 193 chr2L 4037753 intron ed + chr2L 4037850 intron ed + chr2L 4037946 intron ed + chr2L_28_4035001 chr2L_4035001 RAL-361 147 chr2L 4060116 4060188 chr2L 4060242 4060314 17 125 9.0 7.5 8.2 1.8 198 chr2L 4060116 intron ed + chr2L 4060215 intron ed + chr2L 4060314 intron ed + chr2L_17_4060001 chr2L_4060001 RAL-361 148 chr2L 4066031 4066051 chr2L 4068886 4068921 Juan 9 2872 8.0 12.5 10.2 0.8 2890 chr2L 4066031 intron ed + chr2L 4067476 intron ed + chr2L 4068921 intron ed + chr2L_9_4065001 chr2L_4065001 RAL-361 149 chr2L 4109917 4109933 chr2L 4110051 4110067 11 134 8.5 11.5 10.0 1.0 150 chr2L 4109917 intron ed + chr2L 4109992 intron ed + chr2L 4110067 intron ed + chr2L_11_4105001 chr2L_4105001 RAL-361 150 chr2L 4156488 4156540 chr2L 4156733 4156785 16 245 5.0 10.5 7.8 1.8 297 chr2L 4156488 intergenic not near genes chr2L 4156636 intergenic not near genes chr2L 4156785 intergenic not near genes chr2L_16_4155001 chr2L_4155001 RAL-361 151 chr2L 4159363 4159416 chr2L 4159613 4159666 17 249 16.5 4.5 10.5 1.5 303 chr2L 4159363 intergenic not near genes chr2L 4159514 intergenic not near genes chr2L 4159666 intergenic not near genes chr2L_17_4155001 chr2L_4155001 RAL-361 152 chr2L 4166334 4166408 chr2L 4166467 4166541 35 131 7.5 8.0 7.8 4.0 207 chr2L 4166334 intergenic Or24a - chr2L 4166438 intergenic Or24a - chr2L 4166541 intergenic Or24a - chr2L_35_4165001 chr2L_4165001 RAL-361 153 chr2L 4184422 4184503 chr2L 4184791 4184872 22 369 4.5 6.0 5.2 3.5 450 chr2L 4184422 intergenic not near genes chr2L 4184647 intergenic not near genes chr2L 4184872 intergenic not near genes chr2L_22_4180001 chr2L_4180001 RAL-361 154 chr2L 4232824 4232890 chr2L 4232961 4233027 38 134 12.0 10.0 11.0 3.2 203 chr2L 4232824 intergenic not near genes chr2L 4232926 intergenic not near genes chr2L 4233027 intergenic not near genes chr2L_38_4230001 chr2L_4230001 RAL-361 155 chr2L 4359994 4360030 chr2L 4360202 4360238 17 208 14.0 12.5 13.2 1.2 244 chr2L 4359994 intergenic not near genes chr2L 4360116 intergenic not near genes chr2L 4360238 intergenic not near genes chr2L_17_4360001 chr2L_4360001 RAL-361 156 chr2L 4601670 4601726 chr2L 4609161 4609217 mdg1 20 7491 6.5 10.5 8.5 2.1 7547 chr2L 4601670 intron dp - chr2L 4605444 intron dp - chr2L 4609217 intron dp - chr2L_20_4605001 chr2L_4605001 RAL-361 157 chr2L 4611407 4611474 chr2L 4611535 4611602 21 126 9.5 11.5 10.5 1.8 195 chr2L 4611407 intron dp - chr2L 4611504 intron dp - chr2L 4611602 intron dp - chr2L_21_4610001 chr2L_4610001 RAL-361 158 chr2L 4661793 4661845 chr2L 4669423 4669475 opus 13 7630 11.0 12.0 11.5 1.0 7682 chr2L 4661793 intergenic not near genes chr2L 4665634 intergenic not near genes chr2L 4669475 intergenic not near genes chr2L_13_4665001 chr2L_4665001 RAL-361 159 chr2L 4721203 4721270 chr2L 4721349 4721417 22 147 3.0 7.5 5.2 3.5 214 chr2L 4721203 3` UTR CG34351 + chr2L 4721310 3` UTR CG34351 + chr2L 4721417 3` UTR CG34351 + chr2L_22_4720001 chr2L_4720001 RAL-361 160 chr2L 4758992 4759064 chr2L 4759126 4759198 25 132 9.5 7.0 8.2 2.7 206 chr2L 4758992 intron CG15630 - chr2L 4759095 intron CG15630 - chr2L 4759198 intron CG15630 - chr2L_25_4755001 chr2L_4755001 RAL-361 161 chr2L 4793283 4793314 chr2L 4793628 4793659 11 345 7.5 8.0 7.8 1.2 376 chr2L 4793283 intron CG15630 - chr2L 4793471 intron CG15630 - chr2L 4793659 exon CG15630 - chr2L_11_4790001 chr2L_4790001 RAL-361 162 chr2L 4825780 4825846 chr2L 4826127 4826199 29 352 13.0 10.0 11.5 2.3 419 chr2L 4825780 intron CG15628 + chr2L 4825990 intron CG15628 + chr2L 4826199 intron CG15628 + chr2L_29_4825001 chr2L_4825001 RAL-361 163 chr2L 4869422 4869496 chr2L 4869552 4869606 34 127 9.5 10.0 9.8 3.1 184 chr2L 4869422 intron pog + chr2L 4869514 intron pog + chr2L 4869606 intron pog + chr2L_34_4865001 chr2L_4865001 RAL-361 164 chr2L 4918129 4918203 chr2L 4923252 4923361 jockey 18 5154 5.5 0.5 3.0 4.5 5232 chr2L 4918129 intron hoe1 - chr2L 4920745 intron hoe1 - chr2L 4923361 intron hoe1 - chr2L_18_4920001 chr2L_4920001 RAL-361 165 chr2L 4925626 4925696 chr2L 4925755 4925825 11 125 5.5 7.5 6.5 1.5 199 chr2L 4925626 intron hoe1 - chr2L 4925726 intron hoe1 - chr2L 4925825 intron hoe1 - chr2L_11_4925001 chr2L_4925001 RAL-361 166 chr2L 4932713 4932792 chr2L 4933013 4933096 22 301 5.0 0.0 2.5 6.3 383 chr2L 4932713 intergenic hoe1 -,hoe2 - chr2L 4932904 intergenic hoe2 - chr2L 4933096 3` UTR hoe2 - chr2L_22_4930001 chr2L_4930001 RAL-361 167 chr2L 4953464 4953505 chr2L 4953755 4953796 pogo 14 289 11.0 7.5 9.2 1.4 332 chr2L 4953464 intergenic Jon25Bii - chr2L 4953630 intergenic Jon25Bii - chr2L 4953796 intergenic Jon25Bi - chr2L_14_4950001 chr2L_4950001 RAL-361 168 chr2L 5010866 5010882 chr2L 5010988 5011009 6 126 5.5 20.0 12.8 0.4 143 chr2L 5010866 intergenic CG31917 -,Tfb5 -,CG3887 + chr2L 5010938 5` UTR CG3887 + chr2L 5011009 5` UTR CG3887 + chr2L_6_5010001 chr2L_5010001 RAL-361 169 chr2L 5027919 5027985 chr2L 5028053 5028119 25 133 0.0 16.0 8.0 2.8 200 chr2L 5027919 intron vkg - chr2L 5028019 intron vkg - chr2L 5028119 5` UTR vkg - chr2L_25_5025001 chr2L_5025001 RAL-361 170 chr2L 5085001 5085036 chr2L 5085143 5085178 15 142 6.5 8.0 7.2 1.8 177 chr2L 5085001 intron pgant5 - chr2L 5085090 intron pgant5 - chr2L 5085178 intron pgant5 - chr2L_15_5085001 chr2L_5085001 RAL-361 171 chr2L 5092367 5092439 chr2L 5092503 5092576 28 136 6.5 6.5 6.5 3.7 209 chr2L 5092367 intron pgant5 - chr2L 5092472 intron pgant5 - chr2L 5092576 intron pgant5 - chr2L_28_5090001 chr2L_5090001 RAL-361 172 chr2L 5117247 5117325 chr2L 5117379 5117457 38 132 4.0 6.5 5.2 6.1 210 chr2L 5117247 intron Msp300 + chr2L 5117352 intron Msp300 + chr2L 5117457 intron Msp300 + chr2L_38_5115001 chr2L_5115001 RAL-361 173 chr2L 5119886 5119945 chr2L 5120034 5120093 4 148 25.0 28.0 26.5 0.1 207 chr2L 5119886 intron Msp300 + chr2L 5119990 intron Msp300 + chr2L 5120093 intron Msp300 + chr2L_4_5115001 chr2L_5115001 RAL-361 174 chr2L 5120927 5120997 chr2L 5121071 5121141 35 141 8.0 8.5 8.2 3.8 214 chr2L 5120927 intron Msp300 + chr2L 5121034 intron Msp300 + chr2L 5121141 intron Msp300 + chr2L_35_5120001 chr2L_5120001 RAL-361 175 chr2L 5204691 5204696 chr2L 5204825 5204830 4 134 6.0 25.5 15.8 0.2 139 chr2L 5204691 intron Msp300 + chr2L 5204760 intron Msp300 + chr2L 5204830 intron Msp300 + chr2L_4_5200001 chr2L_5200001 RAL-361 176 chr2L 5242936 5242937 chr2L 16217660 16217660 5 10974724 41.0 38.0 39.5 0.1 10974724 chr2L 5242936 intron tkv - chr2L 10730298 3` UTR,5` UTR CG6443 +,CG17118 + chr2L 16217660 intergenic not near genes chr2L_5_10730001 chr2L_10730001 RAL-361 177 chr2L 5342726 5342791 chr2L 5345156 5345221 Doc 29 2429 9.5 10.0 9.8 2.7 2495 chr2L 5342726 intergenic CG12512 - chr2L 5343974 intergenic not near genes chr2L 5345221 intergenic not near genes chr2L_29_5340001 chr2L_5340001 RAL-361 178 chr2L 5397968 5398042 chr2L 5398097 5398107 10 112 7.5 10.5 9.0 1.0 139 chr2L 5397968 intergenic not near genes chr2L 5398038 intergenic not near genes chr2L 5398107 intergenic not near genes chr2L_10_5395001 chr2L_5395001 RAL-361 179 chr2L 5563647 5563690 chr2L 5563781 5563824 30 134 0.0 11.5 5.8 4.4 177 chr2L 5563647 intergenic GluRIIB + chr2L 5563736 intergenic GluRIIB + chr2L 5563824 intergenic GluRIIB + chr2L_30_5560001 chr2L_5560001 RAL-361 180 chr2L 5584642 5584649 chr2L 5584885 5584892 7 243 21.0 9.0 15.0 0.4 250 chr2L 5584642 intergenic not near genes chr2L 5584767 intergenic not near genes chr2L 5584892 intergenic not near genes chr2L_7_5580001 chr2L_5580001 RAL-361 181 chr2L 5584653 5584704 chr2L 5584880 5584947 17 239 12.0 8.5 10.2 1.5 294 chr2L 5584653 intergenic not near genes chr2L 5584800 intergenic not near genes chr2L 5584947 intergenic not near genes chr2L_17_5580001 chr2L_5580001 RAL-361 182 chr2L 5588735 5588805 chr2L 5589189 5589243 23 448 6.5 14.0 10.2 2.1 508 chr2L 5588735 intergenic CG7251 - chr2L 5588989 intergenic not near genes chr2L 5589243 intergenic not near genes chr2L_23_5585001 chr2L_5585001 RAL-361 183 chr2L 5607135 5607147 chr2L 5607262 5607274 7 127 4.0 18.5 11.2 0.6 139 chr2L 5607135 intron CG14010 - chr2L 5607204 intron CG14010 - chr2L 5607274 intron CG14010 - chr2L_7_5605001 chr2L_5605001 RAL-361 184 chr2L 5628149 5628217 chr2L 5628284 5628351 11 135 0.0 7.0 3.5 2.4 202 chr2L 5628149 intron CG31646 - chr2L 5628250 intron CG31646 - chr2L 5628351 intron CG31646 - chr2L_11_5625001 chr2L_5625001 RAL-361 185 chr2L 5633322 5633336 chr2L 5633394 5633445 9 113 7.5 8.5 8.0 1.0 123 chr2L 5633322 intron CG31646 - chr2L 5633384 intron CG31646 - chr2L 5633445 intron CG31646 - chr2L_9_5630001 chr2L_5630001 RAL-361 186 chr2L 5637307 5637371 chr2L 5637539 5637604 19 236 3.0 12.5 7.8 2.2 297 chr2L 5637307 intron CG31646 - chr2L 5637456 intron CG31646 - chr2L 5637604 intron CG31646 - chr2L_19_5635001 chr2L_5635001 RAL-361 187 chr2L 5646634 5646671 chr2L 5646773 5646805 18 136 16.5 9.0 12.8 1.3 171 chr2L 5646634 intron CG31646 - chr2L 5646720 intron CG31646 - chr2L 5646805 intron CG31646 - chr2L_18_5645001 chr2L_5645001 RAL-361 188 chr2L 5676934 5677008 chr2L 5677067 5677141 23 133 8.0 5.0 6.5 3.1 207 chr2L 5676934 intergenic not near genes chr2L 5677038 intergenic not near genes chr2L 5677141 intergenic not near genes chr2L_23_5675001 chr2L_5675001 RAL-361 189 chr2L 5695812 5695885 chr2L 5695954 5696026 33 142 7.0 5.0 6.0 4.7 214 chr2L 5695812 intergenic not near genes chr2L 5695919 intergenic not near genes chr2L 5696026 intergenic not near genes chr2L_33_5695001 chr2L_5695001 RAL-361 190 chr2L 5764872 5764927 chr2L 5765031 5765085 4 159 0.0 9.5 4.8 0.7 213 chr2L 5764872 intron obst-E - chr2L 5764978 intron obst-E - chr2L 5765085 intron obst-E - chr2L_4_5760001 chr2L_5760001 RAL-361 191 chr2L 5776511 5776545 chr2L 5776657 5776691 24 146 24.5 11.0 17.8 1.3 180 chr2L 5776511 intron CG9171 - chr2L 5776601 intron CG9171 - chr2L 5776691 intron CG9171 - chr2L_24_5775001 chr2L_5775001 RAL-361 192 chr2L 5776546 5776569 chr2L 5776652 5776715 11 140 16.0 9.5 12.8 0.8 169 chr2L 5776546 intron CG9171 - chr2L 5776630 intron CG9171 - chr2L 5776715 intron CG9171 - chr2L_11_5775001 chr2L_5775001 RAL-361 193 chr2L 5806201 5806238 chr2L 5806354 5806391 14 153 12.5 13.5 13.0 1.0 190 chr2L 5806201 intron CG11034 + chr2L 5806296 intron CG11034 + chr2L 5806391 intron CG11034 + chr2L_14_5805001 chr2L_5805001 RAL-361 194 chr2L 5827670 5827687 chr2L 5836728 5836745 roo 7 9058 16.0 9.5 12.8 0.5 9075 chr2L 5827670 intron TrissinR + chr2L 5832208 intron TrissinR + chr2L 5836745 intron TrissinR + chr2L_7_5830001 chr2L_5830001 RAL-361 195 chr2L 5827695 5827712 chr2L 5836727 5836770 roo 10 9055 11.5 9.5 10.5 0.9 9075 chr2L 5827695 intron TrissinR + chr2L 5832232 intron TrissinR + chr2L 5836770 intron TrissinR + chr2L_10_5830001 chr2L_5830001 RAL-361 196 chr2L 5839150 5839194 chr2L 5839256 5839298 11 111 7.0 10.0 8.5 1.2 148 chr2L 5839150 intron TrissinR + chr2L 5839224 intron TrissinR + chr2L 5839298 intron TrissinR + chr2L_11_5835001 chr2L_5835001 RAL-361 197 chr2L 5870429 5870495 chr2L 5870556 5870622 28 127 11.5 9.5 10.5 2.4 193 chr2L 5870429 intron rau - chr2L 5870526 intron rau - chr2L 5870622 intron rau - chr2L_28_5870001 chr2L_5870001 RAL-361 198 chr2L 5886552 5886606 chr2L 5886694 5886746 6 142 9.5 0.0 4.8 1.0 194 chr2L 5886552 3` UTR CG9029 + chr2L 5886649 intergenic CG9029 + chr2L 5886746 intergenic CG9029 +,CR44577 - chr2L_6_5885001 chr2L_5885001 RAL-361 199 chr2L 5897550 5897623 chr2L 5897683 5897726 35 130 6.0 10.5 8.2 3.8 176 chr2L 5897550 intergenic not near genes chr2L 5897638 intergenic not near genes chr2L 5897726 intergenic not near genes chr2L_35_5895001 chr2L_5895001 RAL-361 200 chr2L 5900216 5900240 chr2L 5900358 5900367 8 140 20.0 12.5 16.2 0.5 151 chr2L 5900216 3` UTR CR44579 - chr2L 5900292 3` UTR CR44579 - chr2L 5900367 3` UTR CR44579 - chr2L_8_5900001 chr2L_5900001 RAL-361 201 chr2L 5900241 5900290 chr2L 5900352 5900414 22 137 10.5 10.0 10.2 2.0 173 chr2L 5900241 3` UTR CR44579 - chr2L 5900328 3` UTR CR44579 - chr2L 5900414 intergenic CR44579 - chr2L_22_5900001 chr2L_5900001 RAL-361 202 chr2L 5904413 5904447 chr2L 5904543 5904575 9 130 10.5 1.0 5.8 1.3 162 chr2L 5904413 exon CG9021 - chr2L 5904494 intron CG9021 - chr2L 5904575 intron CG9021 - chr2L_9_5900001 chr2L_5900001 RAL-361 203 chr2L 5926462 5926510 chr2L 5926849 5926897 23 387 8.0 9.0 8.5 2.4 435 chr2L 5926462 intron dsf + chr2L 5926680 intron dsf + chr2L 5926897 intron dsf + chr2L_23_5925001 chr2L_5925001 RAL-361 204 chr2L 5940986 5941002 chr2L 5941146 5941162 9 160 20.5 23.5 22.0 0.4 176 chr2L 5940986 intergenic not near genes chr2L 5941074 intergenic not near genes chr2L 5941162 intergenic not near genes chr2L_9_5940001 chr2L_5940001 RAL-361 205 chr2L 5941981 5942053 chr2L 5942123 5942195 34 139 12.0 10.0 11.0 2.8 214 chr2L 5941981 intergenic CR45289 + chr2L 5942088 5` UTR CR45289 + chr2L 5942195 5` UTR CR45289 + chr2L_34_5940001 chr2L_5940001 RAL-361 206 chr2L 5982108 5982159 chr2L 5982209 5982234 38 115 7.5 6.5 7.0 4.8 126 chr2L 5982108 intron eIF-4a + chr2L 5982171 intron eIF-4a + chr2L 5982234 intron eIF-4a + chr2L_38_5980001 chr2L_5980001 RAL-361 207 chr2L 5993282 5993352 chr2L 5993423 5993493 32 141 9.0 7.0 8.0 3.6 211 chr2L 5993282 exon lid - chr2L 5993388 intron lid - chr2L 5993493 exon lid - chr2L_32_5990001 chr2L_5990001 RAL-361 208 chr2L 6007047 6007065 chr2L 6007173 6007191 8 126 16.0 4.0 10.0 0.7 144 chr2L 6007047 intergenic Gal -,CG9098 - chr2L 6007119 intergenic CG9098 -,Gal - chr2L 6007191 intergenic CG9098 -,Gal - chr2L_8_6005001 chr2L_6005001 RAL-361 209 chr2L 6007067 6007073 chr2L 6007171 6007199 5 118 15.0 3.5 9.2 0.5 132 chr2L 6007067 intergenic Gal -,CG9098 - chr2L 6007133 intergenic CG9098 -,Gal - chr2L 6007199 intergenic CG9098 -,Gal - chr2L_5_6005001 chr2L_6005001 RAL-361 210 chr2L 6036989 6037058 chr2L 6037117 6037164 36 127 12.0 12.5 12.2 2.7 175 chr2L 6036989 5` UTR mtm - chr2L 6037076 3` UTR CG9117 - chr2L 6037164 exon CG9117 - chr2L_36_6035001 chr2L_6035001 RAL-361 211 chr2L 6050394 6050465 chr2L 6050547 6050619 41 154 7.0 11.0 9.0 4.1 225 chr2L 6050394 3` UTR CG12393 + chr2L 6050506 intergenic CG12393 +,CG9135 + chr2L 6050619 intergenic CG12393 +,CG9135 + chr2L_41_6050001 chr2L_6050001 RAL-361 212 chr2L 6075036 6075067 chr2L 6075178 6075209 15 141 5.5 0.0 2.8 3.9 173 chr2L 6075036 intergenic CR43801 - chr2L 6075122 intergenic CR43801 - chr2L 6075209 intergenic CR43801 - chr2L_15_6075001 chr2L_6075001 RAL-361 213 chr2L 6103661 6103694 chr2L 6108092 6108146 14 4436 41.0 42.0 41.5 0.3 4485 chr2L 6103661 intron stai + chr2L 6105904 intron stai + chr2L 6108146 intron stai + chr2L_14_6105001 chr2L_6105001 RAL-361 214 chr2L 6130718 6130777 chr2L 6130853 6130911 15 135 7.0 0.0 3.5 3.3 193 chr2L 6130718 intergenic CG42730 -,tectonic -,CG9222 + chr2L 6130814 intergenic CG42730 -,tectonic -,CG9222 + chr2L 6130911 intergenic CG9222 +,CG42730 -,tectonic - chr2L_15_6130001 chr2L_6130001 RAL-361 215 chr2L 6133552 6133555 chr2L 6133694 6133695 4 142 22.0 17.0 19.5 0.2 143 chr2L 6133552 3` UTR CR45719 - chr2L 6133624 3` UTR CR45719 - chr2L 6133695 intergenic CR45719 - chr2L_4_6130001 chr2L_6130001 RAL-361 216 chr2L 6133557 6133604 chr2L 6133670 6133746 32 137 11.0 10.5 10.8 2.7 189 chr2L 6133557 3` UTR CR45719 - chr2L 6133652 3` UTR CR45719 - chr2L 6133746 intergenic CR45719 - chr2L_32_6130001 chr2L_6130001 RAL-361 217 chr2L 6242927 6242984 chr2L 6243075 6243131 26 147 8.5 5.5 7.0 3.2 204 chr2L 6242927 intergenic not near genes chr2L 6243029 intergenic not near genes chr2L 6243131 intergenic not near genes chr2L_26_6240001 chr2L_6240001 RAL-361 218 chr2L 6253571 6253632 chr2L 6253697 6253758 19 125 8.5 8.0 8.2 2.1 187 chr2L 6253571 intron Ddr + chr2L 6253664 intron Ddr + chr2L 6253758 intron Ddr + chr2L_19_6250001 chr2L_6250001 RAL-361 219 chr2L 6279592 6279628 chr2L 6279721 6279757 18 129 13.5 0.5 7.0 2.2 165 chr2L 6279592 intron Ddr + chr2L 6279674 intron Ddr + chr2L 6279757 intron Ddr + chr2L_18_6275001 chr2L_6275001 RAL-361 220 chr2L 6283904 6283976 chr2L 6284054 6284138 13 161 3.0 0.0 1.5 5.2 234 chr2L 6283904 intron Ddr + chr2L 6284021 intron Ddr + chr2L 6284138 intron Ddr + chr2L_13_6280001 chr2L_6280001 RAL-361 221 chr2L 6349027 6349070 chr2L 6349155 6349198 18 128 8.0 7.0 7.5 2.1 171 chr2L 6349027 intergenic CG9498 - chr2L 6349112 intergenic CG9498 - chr2L 6349198 intergenic CG9498 - chr2L_18_6345001 chr2L_6345001 RAL-361 222 chr2L 6363104 6363179 chr2L 6366076 6366125 Burdock 35 2969 10.0 3.0 6.5 4.7 3021 chr2L 6363104 intergenic not near genes chr2L 6364614 intergenic not near genes chr2L 6366125 intergenic not near genes chr2L_35_6360001 chr2L_6360001 RAL-361 223 chr2L 6366403 6366469 chr2L 6366532 6366569 29 126 7.5 8.0 7.8 3.3 166 chr2L 6366403 intergenic not near genes chr2L 6366486 intergenic not near genes chr2L 6366569 intergenic not near genes chr2L_29_6365001 chr2L_6365001 RAL-361 224 chr2L 6390072 6390150 chr2L 6390204 6390280 9 130 7.0 0.0 3.5 2.0 208 chr2L 6390072 intron CG42368 - chr2L 6390176 intron CG42368 - chr2L 6390280 intron CG42368 - chr2L_9_6390001 chr2L_6390001 RAL-361 225 chr2L 6426813 6426882 chr2L 6445123 6445190 roo 29 18309 10.0 9.5 9.8 2.7 18377 chr2L 6426813 3` UTR CG9527 - chr2L 6436002 intron CG9527 - chr2L 6445190 exon CG9527 - chr2L_29_6435001 chr2L_6435001 RAL-361 226 chr2L 6483188 6483222 chr2L 6483345 6483366 14 152 21.5 16.5 19.0 0.7 178 chr2L 6483188 exon DLP + chr2L 6483277 exon DLP + chr2L 6483366 exon DLP + chr2L_14_6480001 chr2L_6480001 RAL-361 227 chr2L 6483223 6483252 chr2L 6483329 6483347 11 139 14.5 13.0 13.8 0.7 124 chr2L 6483223 exon DLP + chr2L 6483285 exon DLP + chr2L 6483347 exon DLP + chr2L_11_6480001 chr2L_6480001 RAL-361 228 chr2L 6527204 6527238 chr2L 6527333 6527367 8 129 7.0 8.0 7.5 0.9 163 chr2L 6527204 intergenic CG31637 +,eya - chr2L 6527286 intergenic eya -,CG31637 + chr2L 6527367 intergenic eya -,CG31637 + chr2L_8_6525001 chr2L_6525001 RAL-361 229 chr2L 6544321 6544394 chr2L 6544463 6544536 45 141 6.5 7.5 7.0 5.6 215 chr2L 6544321 intron eya - chr2L 6544428 intron eya - chr2L 6544536 intron eya - chr2L_45_6540001 chr2L_6540001 RAL-361 230 chr2L 6590049 6590124 chr2L 6590177 6590244 28 125 10.5 0.5 5.5 4.3 195 chr2L 6590049 intron CG11319 - chr2L 6590146 intron CG11319 - chr2L 6590244 intron CG11319 - chr2L_28_6590001 chr2L_6590001 RAL-361 231 chr2L 6626846 6626910 chr2L 6626981 6627031 25 134 13.5 12.0 12.8 1.8 185 chr2L 6626846 intron Oatp26F - chr2L 6626938 intron Oatp26F - chr2L 6627031 intron Oatp26F - chr2L_25_6625001 chr2L_6625001 RAL-361 232 chr2L 6697075 6697146 chr2L 6697244 6697283 11 163 0.0 3.0 1.5 4.4 208 chr2L 6697075 exon Tsp - chr2L 6697179 intron Tsp - chr2L 6697283 exon Tsp - chr2L_11_6695001 chr2L_6695001 RAL-361 233 chr2L 6772543 6772594 chr2L 6772676 6772722 12 130 12.0 12.0 12.0 0.9 179 chr2L 6772543 intron CG11321 - chr2L 6772632 5` UTR CG11321 - chr2L 6772722 5` UTR CG11321 - chr2L_12_6770001 chr2L_6770001 RAL-361 234 chr2L 6799496 6799522 chr2L 6799634 6799638 11 136 14.5 8.0 11.2 0.9 142 chr2L 6799496 5` UTR CR43610 + chr2L 6799567 5` UTR CR43610 + chr2L 6799638 intergenic CR43610 +,CG17376 - chr2L_11_6795001 chr2L_6795001 RAL-361 235 chr2L 6799523 6799560 chr2L 6799625 6799698 15 135 7.5 6.0 6.8 1.9 175 chr2L 6799523 5` UTR CR43610 + chr2L 6799610 intergenic CR43610 +,CG17376 - chr2L 6799698 intergenic CR43610 +,CG17376 - chr2L_15_6795001 chr2L_6795001 RAL-361 236 chr2L 6818078 6818142 chr2L 6818217 6818279 14 139 1.5 10.5 6.0 2.0 201 chr2L 6818078 intergenic not near genes chr2L 6818178 intergenic not near genes chr2L 6818279 intergenic not near genes chr2L_14_6815001 chr2L_6815001 RAL-361 237 chr2L 6851600 6851620 chr2L 6851750 6851770 12 150 11.5 0.0 5.8 1.8 170 chr2L 6851600 intergenic not near genes chr2L 6851685 intergenic not near genes chr2L 6851770 intergenic not near genes chr2L_12_6850001 chr2L_6850001 RAL-361 238 chr2L 6874646 6874705 chr2L 6874777 6874836 27 131 11.5 7.5 9.5 2.6 190 chr2L 6874646 intergenic Nlg2 +,CR44914 + chr2L 6874741 intergenic Nlg2 +,CR44914 + chr2L 6874836 intergenic Nlg2 +,CR44914 + chr2L_27_6870001 chr2L_6870001 RAL-361 239 chr2L 6876749 6876809 chr2L 6882970 6883034 diver 16 6235 7.5 9.0 8.2 1.7 6285 chr2L 6876749 intron Nlg2 + chr2L 6879892 intron Nlg2 + chr2L 6883034 intron Nlg2 + chr2L_16_6875001 chr2L_6875001 RAL-361 240 chr2L 6883697 6883767 chr2L 6883833 6883902 27 133 10.0 7.5 8.8 2.8 205 chr2L 6883697 intron Nlg2 + chr2L 6883800 intron Nlg2 + chr2L 6883902 intron Nlg2 + chr2L_27_6880001 chr2L_6880001 RAL-361 241 chr2L 6991388 6991396 chr2L 6998557 6998565 HMS-Beagle 4 7169 23.0 10.0 16.5 0.2 7177 chr2L 6991388 intron uif - chr2L 6994976 intron uif - chr2L 6998565 intron uif - chr2L_4_6990001 chr2L_6990001 RAL-361 242 chr2L 6991399 6991433 chr2L 6998556 6998602 HMS-Beagle 6 7166 15.5 9.0 12.2 0.5 7203 chr2L 6991399 intron uif - chr2L 6995000 intron uif - chr2L 6998602 intron uif - chr2L_6_6990001 chr2L_6990001 RAL-361 243 chr2L 7005180 7005255 chr2L 7005326 7005401 41 146 13.5 8.5 11.0 3.4 221 chr2L 7005180 intron uif - chr2L 7005290 intron uif - chr2L 7005401 intron uif - chr2L_41_7005001 chr2L_7005001 RAL-361 244 chr2L 7008661 7008737 chr2L 7008793 7008869 39 131 10.0 10.0 10.0 3.5 208 chr2L 7008661 intron uif - chr2L 7008765 intron uif - chr2L 7008869 intron uif - chr2L_39_7005001 chr2L_7005001 RAL-361 245 chr2L 7042028 7042087 chr2L 7042167 7042226 22 137 6.5 7.5 7.0 2.8 198 chr2L 7042028 intron milt + chr2L 7042127 intron milt + chr2L 7042226 intron milt + chr2L_22_7040001 chr2L_7040001 RAL-361 246 chr2L 7095811 7095820 chr2L 7095941 7095950 5 130 12.5 2.5 7.5 0.6 139 chr2L 7095811 intergenic not near genes chr2L 7095880 intergenic not near genes chr2L 7095950 intergenic not near genes chr2L_5_7095001 chr2L_7095001 RAL-361 247 chr2L 7122821 7122881 chr2L 7122952 7123011 17 130 4.5 11.0 7.8 1.9 190 chr2L 7122821 intron Pvf3 - chr2L 7122916 intron Pvf3 - chr2L 7123011 intron Pvf3 - chr2L_17_7120001 chr2L_7120001 RAL-361 248 chr2L 7125744 7125810 chr2L 7125910 7125976 23 166 10.0 8.0 9.0 2.3 232 chr2L 7125744 intron Pvf3 - chr2L 7125860 intron Pvf3 - chr2L 7125976 intron Pvf3 - chr2L_23_7125001 chr2L_7125001 RAL-361 249 chr2L 7169647 7169694 chr2L 7169804 7169850 13 157 0.0 0.0 0.0 13.0 203 chr2L 7169647 intergenic not near genes chr2L 7169748 intergenic not near genes chr2L 7169850 intergenic not near genes chr2L_13_7165001 chr2L_7165001 RAL-361 250 chr2L 7193630 7193696 chr2L 7193759 7193834 19 130 0.0 6.5 3.2 4.5 204 chr2L 7193630 intron CG4497 - chr2L 7193732 intron CG4497 - chr2L 7193834 intron CG4497 - chr2L_19_7190001 chr2L_7190001 RAL-361 251 chr2L 7258858 7258924 chr2L 7258990 7259013 11 112 5.0 2.5 3.8 2.3 155 chr2L 7258858 intron Wnt4 - chr2L 7258936 intron Wnt4 - chr2L 7259013 intron Wnt4 - chr2L_11_7255001 chr2L_7255001 RAL-361 252 chr2L 7325870 7325931 chr2L 7326005 7326066 19 131 8.0 5.5 6.8 2.4 196 chr2L 7325870 intergenic not near genes chr2L 7325968 intergenic not near genes chr2L 7326066 intergenic not near genes chr2L_19_7325001 chr2L_7325001 RAL-361 253 chr2L 7330221 7330294 chr2L 7330350 7330423 21 127 7.0 6.0 6.5 2.8 202 chr2L 7330221 intergenic not near genes chr2L 7330322 intergenic not near genes chr2L 7330423 intergenic not near genes chr2L_21_7330001 chr2L_7330001 RAL-361 254 chr2L 7335163 7335229 chr2L 7335310 7335376 22 147 13.5 6.0 9.8 2.0 213 chr2L 7335163 intron Wnt6 + chr2L 7335270 intron Wnt6 + chr2L 7335376 intron Wnt6 + chr2L_22_7335001 chr2L_7335001 RAL-361 255 chr2L 7336847 7336912 chr2L 7336980 7337045 30 132 9.0 9.5 9.2 2.9 198 chr2L 7336847 intron Wnt6 + chr2L 7336946 intron Wnt6 + chr2L 7337045 intron Wnt6 + chr2L_30_7335001 chr2L_7335001 RAL-361 256 chr2L 7340040 7340048 chr2L 7340169 7340177 4 129 1.5 20.5 11.0 0.3 137 chr2L 7340040 intron Wnt6 + chr2L 7340108 intron Wnt6 + chr2L 7340177 intron Wnt6 + chr2L_4_7340001 chr2L_7340001 RAL-361 257 chr2L 7343286 7343351 chr2L 7350452 7350499 roo 12 7162 6.0 7.0 6.5 1.6 7213 chr2L 7343286 intron Wnt6 + chr2L 7346892 intron Wnt6 + chr2L 7350499 intron Wnt6 + chr2L_12_7345001 chr2L_7345001 RAL-361 258 chr2L 7370747 7370818 chr2L 7370902 7370973 15 155 10.5 2.5 6.5 2.0 226 chr2L 7370747 intron Wnt10 + chr2L 7370860 intron Wnt10 + chr2L 7370973 intron Wnt10 + chr2L_15_7370001 chr2L_7370001 RAL-361 259 chr2L 7377843 7377850 chr2L 7377990 7377997 6 147 12.0 5.5 8.8 0.6 154 chr2L 7377843 5` UTR ninaC + chr2L 7377920 intron ninaC + chr2L 7377997 intron ninaC + chr2L_6_7375001 chr2L_7375001 RAL-361 260 chr2L 7377851 7377902 chr2L 7377983 7378049 10 144 2.5 4.5 3.5 2.2 198 chr2L 7377851 5` UTR ninaC + chr2L 7377950 intron ninaC + chr2L 7378049 intron ninaC + chr2L_10_7375001 chr2L_7375001 RAL-361 261 chr2L 7405732 7405792 chr2L 7405862 7405922 8 130 11.5 1.0 6.2 1.1 190 chr2L 7405732 exon CG5177 + chr2L 7405827 intron CG5177 + chr2L 7405922 intron CG5177 + chr2L_8_7405001 chr2L_7405001 RAL-361 262 chr2L 5904538 5904541 chr2L 7466149 7466150 9 1561609 4.0 39.5 21.8 0.4 1561612 chr2L 5904538 intron CG9021 - chr2L 6685344 exon CG11327 - chr2L 7466150 intergenic CG6055 + chr2L_9_6685001 chr2L_6685001 RAL-361 263 chr2L 7502704 7502747 chr2L 7502814 7502862 4 119 9.0 10.5 9.8 0.4 158 chr2L 7502704 intron RapGAP1 - chr2L 7502783 intron RapGAP1 - chr2L 7502862 intron RapGAP1 - chr2L_4_7500001 chr2L_7500001 RAL-361 264 chr2L 7520443 7520506 chr2L 7520596 7520659 20 152 10.0 12.5 11.2 1.6 216 chr2L 7520443 intron RapGAP1 - chr2L 7520551 intron RapGAP1 - chr2L 7520659 intron RapGAP1 - chr2L_20_7520001 chr2L_7520001 RAL-361 265 chr2L 7548074 7548109 chr2L 7550560 7550595 Burdock 6 2485 6.0 17.0 11.5 0.5 2521 chr2L 7548074 intron RapGAP1 - chr2L 7549334 intron RapGAP1 - chr2L 7550595 intron RapGAP1 - chr2L_6_7545001 chr2L_7545001 RAL-361 266 chr2L 7555193 7555234 chr2L 7555320 7555361 13 126 0.0 12.5 6.2 1.8 168 chr2L 7555193 intron RapGAP1 - chr2L 7555277 intron RapGAP1 - chr2L 7555361 intron RapGAP1 - chr2L_13_7555001 chr2L_7555001 RAL-361 267 chr2L 7579153 7579188 chr2L 7579394 7579429 BS 17 241 12.5 0.5 6.5 2.3 276 chr2L 7579153 intergenic RapGAP1 - chr2L 7579291 intergenic RapGAP1 - chr2L 7579429 intergenic RapGAP1 - chr2L_17_7575001 chr2L_7575001 RAL-361 268 chr2L 7585461 7585504 chr2L 7585610 7585653 11 149 5.5 7.5 6.5 1.5 192 chr2L 7585461 intergenic not near genes chr2L 7585557 intergenic not near genes chr2L 7585653 intergenic not near genes chr2L_11_7585001 chr2L_7585001 RAL-361 269 chr2L 7619108 7619181 chr2L 7619586 7619636 33 476 6.0 8.5 7.2 4.0 528 chr2L 7619108 intergenic not near genes chr2L 7619372 intergenic not near genes chr2L 7619636 intergenic not near genes chr2L_33_7615001 chr2L_7615001 RAL-361 270 chr2L 7659582 7659658 chr2L 7659716 7659774 17 115 7.0 6.5 6.8 2.2 192 chr2L 7659582 intron Slob - chr2L 7659678 intron Slob - chr2L 7659774 intron Slob - chr2L_17_7655001 chr2L_7655001 RAL-361 271 chr2L 7663996 7664067 chr2L 7664142 7664214 24 146 7.5 0.0 3.8 5.0 218 chr2L 7663996 intron Slob - chr2L 7664105 intron Slob - chr2L 7664214 intron Slob - chr2L_24_7660001 chr2L_7660001 RAL-361 272 chr2L 7702490 7702566 chr2L 7702632 7702708 15 142 7.0 5.0 6.0 2.1 218 chr2L 7702490 intergenic Tep3 + chr2L 7702599 intergenic Tep3 + chr2L 7702708 intergenic Tep3 + chr2L_15_7700001 chr2L_7700001 RAL-361 273 chr2L 7765764 7765837 chr2L 7765908 7765972 23 137 7.0 0.0 3.5 5.1 208 chr2L 7765764 3` UTR CG7196 + chr2L 7765868 3` UTR CG7196 + chr2L 7765972 intergenic CG7196 + chr2L_23_7765001 chr2L_7765001 RAL-361 274 chr2L 7768834 7768873 chr2L 7768982 7769021 18 147 15.5 8.5 12.0 1.4 187 chr2L 7768834 intron CG7191 + chr2L 7768928 intron CG7191 + chr2L 7769021 intron CG7191 + chr2L_18_7765001 chr2L_7765001 RAL-361 275 chr2L 7790928 7790942 chr2L 7791065 7791079 9 137 8.5 7.5 8.0 1.0 151 chr2L 7790928 intergenic LKR -,CG7149 - chr2L 7791004 intergenic LKR -,CG7149 - chr2L 7791079 intergenic LKR - chr2L_9_7790001 chr2L_7790001 RAL-361 276 chr2L 7790952 7790994 chr2L 7791062 7791116 12 132 7.5 7.5 7.5 1.4 164 chr2L 7790952 intergenic LKR -,CG7149 - chr2L 7791034 intergenic LKR -,CG7149 - chr2L 7791116 intergenic LKR - chr2L_12_7790001 chr2L_7790001 RAL-361 277 chr2L 7867524 7867593 chr2L 7867668 7867737 28 143 10.0 7.0 8.5 2.9 213 chr2L 7867524 intron Proc - chr2L 7867630 intron Proc - chr2L 7867737 intron Proc - chr2L_28_7865001 chr2L_7865001 RAL-361 278 chr2L 7887658 7887677 chr2L 7887790 7887809 5 132 4.5 12.0 8.2 0.5 151 chr2L 7887658 intergenic Spn28Da -,CG7102 - chr2L 7887734 3` UTR Spn28Da - chr2L 7887809 exon Spn28Da - chr2L_5_7885001 chr2L_7885001 RAL-361 279 chr2L 7903559 7903612 chr2L 7903687 7903750 25 137 7.5 8.5 8.0 2.8 191 chr2L 7903559 intron Snoo - chr2L 7903654 intron Snoo - chr2L 7903750 intron Snoo - chr2L_25_7900001 chr2L_7900001 RAL-361 280 chr2L 7906707 7906773 chr2L 7906872 7906903 18 158 3.5 6.5 5.0 3.0 196 chr2L 7906707 intron Snoo - chr2L 7906805 intron Snoo - chr2L 7906903 intron Snoo - chr2L_18_7905001 chr2L_7905001 RAL-361 281 chr2L 7924575 7924640 chr2L 7924702 7924767 30 127 11.0 9.0 10.0 2.7 192 chr2L 7924575 intron Snoo - chr2L 7924671 intron Snoo - chr2L 7924767 intron Snoo - chr2L_30_7920001 chr2L_7920001 RAL-361 282 chr2L 7941166 7941195 chr2L 7941281 7941324 13 122 16.5 13.5 15.0 0.8 158 chr2L 7941166 intron Snoo - chr2L 7941245 intron Snoo - chr2L 7941324 intron Snoo - chr2L_13_7940001 chr2L_7940001 RAL-361 283 chr2L 7958995 7959070 chr2L 7960456 7960521 pogo 39 1460 7.5 10.5 9.0 3.9 1526 chr2L 7958995 intron Snoo - chr2L 7959758 intron Snoo - chr2L 7960521 intron Snoo - chr2L_39_7955001 chr2L_7955001 RAL-361 284 chr2L 7977040 7977107 chr2L 7984066 7984133 297 26 7024 7.0 12.0 9.5 2.5 7093 chr2L 7977040 intron Snoo - chr2L 7980586 intron Snoo - chr2L 7984133 5` UTR,5` UTR Snoo -,CG7231 + chr2L_26_7980001 chr2L_7980001 RAL-361 285 chr2L 7986879 7986915 chr2L 7987015 7987052 16 136 4.5 17.0 10.8 1.4 173 chr2L 7986879 3` UTR pes - chr2L 7986966 3` UTR pes - chr2L 7987052 3` UTR pes - chr2L_16_7985001 chr2L_7985001 RAL-361 286 chr2L 8013618 8013646 chr2L 8023603 8023631 copia 18 9985 9.5 13.5 11.5 1.4 10013 chr2L 8013618 intron Tg + chr2L 8018624 intron Tg + chr2L 8023631 intron Tg + chr2L_18_8015001 chr2L_8015001 RAL-361 287 chr2L 8034564 8034573 chr2L 8034715 8034717 4 149 15.5 24.5 20.0 0.2 153 chr2L 8034564 intron,intron CG7367 -,Cka + chr2L 8034640 intron,intron CG7367 -,Cka + chr2L 8034717 intron,intron CG7367 -,Cka + chr2L_4_8030001 chr2L_8030001 RAL-361 288 chr2L 8034576 8034581 chr2L 8034710 8034732 5 148 13.5 23.0 18.2 0.3 156 chr2L 8034576 intron,intron CG7367 -,Cka + chr2L 8034654 intron,intron CG7367 -,Cka + chr2L 8034732 intron,intron CG7367 -,Cka + chr2L_5_8030001 chr2L_8030001 RAL-361 289 chr2L 8164542 8164606 chr2L 8164674 8164738 25 131 11.5 6.5 9.0 2.5 196 chr2L 8164542 intron Piezo + chr2L 8164640 intron Piezo + chr2L 8164738 intron Piezo + chr2L_25_8160001 chr2L_8160001 RAL-361 290 chr2L 8171274 8171292 chr2L 8171405 8171423 10 131 0.0 13.5 6.8 1.3 149 chr2L 8171274 intron Piezo + chr2L 8171348 intron Piezo + chr2L 8171423 intron Piezo + chr2L_10_8170001 chr2L_8170001 RAL-361 291 chr2L 8184873 8184942 chr2L 8185014 8185083 28 141 8.0 6.0 7.0 3.5 210 chr2L 8184873 intron Piezo + chr2L 8184978 intron Piezo + chr2L 8185083 intron Piezo + chr2L_28_8180001 chr2L_8180001 RAL-361 292 chr2L 8230267 8230347 chr2L 8230401 8230477 19 133 4.0 6.0 5.0 3.2 210 chr2L 8230267 5` UTR Pvr - chr2L 8230372 intron Pvr - chr2L 8230477 intron Pvr - chr2L_19_8230001 chr2L_8230001 RAL-361 293 chr2L 8232132 8232199 chr2L 8232342 8232409 30 208 8.0 7.0 7.5 3.5 277 chr2L 8232132 intron Pvr - chr2L 8232270 intron Pvr - chr2L 8232409 intron Pvr - chr2L_30_8230001 chr2L_8230001 RAL-361 294 chr2L 8271570 8271647 chr2L 8271696 8271773 13 126 2.0 3.5 2.8 3.4 203 chr2L 8271570 intron Btk29A - chr2L 8271672 intron Btk29A - chr2L 8271773 intron Btk29A - chr2L_13_8270001 chr2L_8270001 RAL-361 295 chr2L 8286249 8286323 chr2L 8286386 8286460 26 135 8.5 7.5 8.0 2.9 211 chr2L 8286249 intron Btk29A - chr2L 8286354 intron Btk29A - chr2L 8286460 intron Btk29A - chr2L_26_8285001 chr2L_8285001 RAL-361 296 chr2L 8336895 8336967 chr2L 8337024 8337044 18 125 1.5 10.0 5.8 2.6 149 chr2L 8336895 intergenic not near genes chr2L 8336970 intergenic not near genes chr2L 8337044 intergenic not near genes chr2L_18_8335001 chr2L_8335001 RAL-361 297 chr2L 8418100 8418122 chr2L 8418249 8418271 10 149 20.5 11.5 16.0 0.6 171 chr2L 8418100 intron Akap200 + chr2L 8418186 intron Akap200 + chr2L 8418271 intron Akap200 + chr2L_10_8415001 chr2L_8415001 RAL-361 298 chr2L 8418129 8418172 chr2L 8418246 8418321 27 146 10.0 11.0 10.5 2.3 192 chr2L 8418129 intron Akap200 + chr2L 8418225 intron Akap200 + chr2L 8418321 intron Akap200 + chr2L_27_8415001 chr2L_8415001 RAL-361 299 chr2L 8451798 8451855 chr2L 8451963 8451974 8 159 3.0 5.5 4.2 1.5 176 chr2L 8451798 5` UTR fu12 - chr2L 8451886 5` UTR fu12 - chr2L 8451974 intron fu12 - chr2L_8_8450001 chr2L_8450001 RAL-361 300 chr2L 8452379 8452439 chr2L 8461600 8461660 roo 16 9221 8.0 12.0 10.0 1.5 9281 chr2L 8452379 intron fu12 - chr2L 8457020 intron fu12 - chr2L 8461660 intron fu12 - chr2L_16_8455001 chr2L_8455001 RAL-361 301 chr2L 8498161 8498237 chr2L 8498292 8498368 26 128 7.5 8.5 8.0 2.9 207 chr2L 8498161 intron Dh31 - chr2L 8498264 intron Dh31 - chr2L 8498368 intron Dh31 - chr2L_26_8495001 chr2L_8495001 RAL-361 302 chr2L 8594418 8594489 chr2L 8601522 8601593 297 30 7104 9.5 11.0 10.2 2.7 7175 chr2L 8594418 intron,3` UTR Sema-1a +,CR43855 - chr2L 8598006 intron Sema-1a + chr2L 8601593 intron Sema-1a + chr2L_30_8595001 chr2L_8595001 RAL-361 303 chr2L 8604924 8604995 chr2L 8605072 8605115 31 147 11.0 9.5 10.2 2.8 191 chr2L 8604924 intron Sema-1a + chr2L 8605020 intron Sema-1a + chr2L 8605115 intron Sema-1a + chr2L_31_8605001 chr2L_8605001 RAL-361 304 chr2L 8612809 8612870 chr2L 8612936 8612997 20 125 11.0 8.0 9.5 1.9 188 chr2L 8612809 intron Sema-1a + chr2L 8612903 intron Sema-1a + chr2L 8612997 intron Sema-1a + chr2L_20_8610001 chr2L_8610001 RAL-361 305 chr2L 8628952 8629028 chr2L 8629086 8629152 24 125 6.0 8.0 7.0 3.0 200 chr2L 8628952 intron Sema-1a + chr2L 8629052 intron Sema-1a + chr2L 8629152 intron Sema-1a + chr2L_24_8625001 chr2L_8625001 RAL-361 306 chr2L 8680088 8680091 chr2L 8680224 8680227 5 136 0.0 20.0 10.0 0.5 139 chr2L 8680088 intergenic CG9287 - chr2L 8680158 intergenic CG9287 - chr2L 8680227 intergenic CG9287 - chr2L_5_8680001 chr2L_8680001 RAL-361 307 chr2L 8723075 8723140 chr2L 8731496 8731567 Tirant 30 8426 11.5 10.0 10.8 2.5 8492 chr2L 8723075 intron raw - chr2L 8727321 intron raw - chr2L 8731567 intron raw - chr2L_30_8725001 chr2L_8725001 RAL-361 308 chr2L 8736219 8736258 chr2L 8736349 8736388 17 130 0.5 6.0 3.2 4.0 169 chr2L 8736219 intron raw - chr2L 8736304 intron raw - chr2L 8736388 intron raw - chr2L_17_8735001 chr2L_8735001 RAL-361 309 chr2L 8794961 8795027 chr2L 8795100 8795166 27 139 11.5 7.0 9.2 2.6 205 chr2L 8794961 intergenic not near genes chr2L 8795064 intergenic not near genes chr2L 8795166 intergenic not near genes chr2L_27_8795001 chr2L_8795001 RAL-361 310 chr2L 8813831 8813854 chr2L 8813943 8813981 11 123 5.0 14.5 9.8 1.0 150 chr2L 8813831 intergenic not near genes chr2L 8813906 intergenic not near genes chr2L 8813981 intergenic not near genes chr2L_11_8810001 chr2L_8810001 RAL-361 311 chr2L 8815866 8815894 chr2L 8816001 8816034 10 138 9.5 7.0 8.2 1.1 168 chr2L 8815866 intergenic not near genes chr2L 8815950 intergenic not near genes chr2L 8816034 intergenic not near genes chr2L_10_8815001 chr2L_8815001 RAL-361 312 chr2L 8820883 8820952 chr2L 8821012 8821082 23 129 6.0 6.0 6.0 3.3 199 chr2L 8820883 intergenic not near genes chr2L 8820982 intergenic not near genes chr2L 8821082 intergenic not near genes chr2L_23_8820001 chr2L_8820001 RAL-361 313 chr2L 8854154 8854186 chr2L 8854287 8854319 12 133 14.5 8.5 11.5 1.0 165 chr2L 8854154 intergenic not near genes chr2L 8854236 intergenic not near genes chr2L 8854319 intergenic not near genes chr2L_12_8850001 chr2L_8850001 RAL-361 314 chr2L 8854188 8854226 chr2L 8854284 8854359 14 108 7.0 8.5 7.8 1.6 171 chr2L 8854188 intergenic not near genes chr2L 8854274 intergenic not near genes chr2L 8854359 intergenic not near genes chr2L_14_8850001 chr2L_8850001 RAL-361 315 chr2L 8956196 8956244 chr2L 8956323 8956376 12 129 4.5 2.5 3.5 2.7 180 chr2L 8956196 intron CG31886 - chr2L 8956286 intron CG31886 - chr2L 8956376 intron CG31886 - chr2L_12_8955001 chr2L_8955001 RAL-361 316 chr2L 8963359 8963368 chr2L 8965674 8965683 4 2315 18.5 38.0 28.2 0.1 2324 chr2L 8963359 exon CG32985 + chr2L 8964521 exon CG32985 + chr2L 8965683 exon CG32984 + chr2L_4_8960001 chr2L_8960001 RAL-361 317 chr2L 8976199 8976255 chr2L 8976326 8976361 16 135 0.0 6.0 3.0 4.0 162 chr2L 8976199 intergenic not near genes chr2L 8976280 intergenic not near genes chr2L 8976361 intergenic not near genes chr2L_16_8975001 chr2L_8975001 RAL-361 318 chr2L 8980417 8980472 chr2L 8980556 8980611 7 139 13.0 0.0 6.5 0.9 194 chr2L 8980417 intron CG13101 - chr2L 8980514 intron CG13101 - chr2L 8980611 intron CG13101 - chr2L_7_8980001 chr2L_8980001 RAL-361 319 chr2L 9000237 9000313 chr2L 9007797 9007899 roo 22 7560 8.5 0.0 4.2 4.2 7662 chr2L 9000237 intergenic Try29F + chr2L 9004068 intergenic not near genes chr2L 9007899 intergenic not near genes chr2L_22_9000001 chr2L_9000001 RAL-361 320 chr2L 9027941 9027951 chr2L 9028075 9028085 6 134 16.5 0.0 8.2 0.7 144 chr2L 9027941 intron,intron CG9582 -,CR44352 - chr2L 9028013 intron,intron CG9582 -,CR44352 - chr2L 9028085 intron,intron CG9582 -,CR44352 - chr2L_6_9025001 chr2L_9025001 RAL-361 321 chr2L 9027960 9027974 chr2L 9028072 9028108 9 132 13.0 0.0 6.5 1.2 148 chr2L 9027960 intron,intron CG9582 -,CR44352 - chr2L 9028034 intron,intron CG9582 -,CR44352 - chr2L 9028108 intron,intron CG9582 -,CR44352 - chr2L_9_9025001 chr2L_9025001 RAL-361 322 chr2L 9084337 9084339 chr2L 16217660 16217660 9 7133322 26.5 38.0 32.2 0.3 7133323 chr2L 9084337 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_9_12650001 chr2L_12650001 RAL-361 323 chr2L 9084340 9084340 chr2L 16217660 16217660 5 7133320 27.0 38.0 32.5 0.1 7133320 chr2L 9084340 intron Toll-4 + chr2L 12651000 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_5_12650001 chr2L_12650001 RAL-361 324 chr2L 9093913 9093949 chr2L 9094046 9094083 10 133 13.0 6.0 9.5 1.0 170 chr2L 9093913 intergenic not near genes chr2L 9093998 intergenic not near genes chr2L 9094083 intergenic not near genes chr2L_10_9090001 chr2L_9090001 RAL-361 325 chr2L 9093951 9093985 chr2L 9094043 9094119 18 131 6.5 6.0 6.2 2.5 168 chr2L 9093951 intergenic not near genes chr2L 9094035 intergenic not near genes chr2L 9094119 intergenic not near genes chr2L_18_9090001 chr2L_9090001 RAL-361 326 chr2L 9114326 9114399 chr2L 9114515 9114589 31 189 7.5 5.5 6.5 4.1 263 chr2L 9114326 intergenic not near genes chr2L 9114458 intergenic not near genes chr2L 9114589 intergenic not near genes chr2L_31_9110001 chr2L_9110001 RAL-361 327 chr2L 9115596 9115651 chr2L 9115727 9115799 5 138 0.0 10.0 5.0 0.8 203 chr2L 9115596 intergenic not near genes chr2L 9115698 intergenic not near genes chr2L 9115799 intergenic not near genes chr2L_5_9115001 chr2L_9115001 RAL-361 328 chr2L 9158750 9158821 chr2L 9158897 9158971 14 147 8.5 0.0 4.2 2.7 221 chr2L 9158750 intron CG32982 + chr2L 9158860 intron CG32982 + chr2L 9158971 intron CG32982 + chr2L_14_9155001 chr2L_9155001 RAL-361 329 chr2L 9164845 9164901 chr2L 9164971 9165027 11 126 0.0 10.5 5.2 1.8 182 chr2L 9164845 exon CG13108 + chr2L 9164936 intron CG13108 + chr2L 9165027 exon CG13108 + chr2L_11_9160001 chr2L_9160001 RAL-361 330 chr2L 9190899 9190926 chr2L 9191038 9191057 4 135 0.5 14.0 7.2 0.5 158 chr2L 9190899 intron tai + chr2L 9190978 intron tai + chr2L 9191057 intron tai + chr2L_4_9190001 chr2L_9190001 RAL-361 331 chr2L 9202045 9202083 chr2L 9202154 9202209 8 117 12.0 15.5 13.8 0.5 164 chr2L 9202045 intron tai + chr2L 9202127 intron tai + chr2L 9202209 intron tai + chr2L_8_9200001 chr2L_9200001 RAL-361 332 chr2L 9217944 9218003 chr2L 9222781 9222848 Doc 17 4841 6.0 1.5 3.8 3.5 4904 chr2L 9217944 intron tai + chr2L 9220396 intron tai + chr2L 9222848 intron tai + chr2L_17_9220001 chr2L_9220001 RAL-361 333 chr2L 9227176 9227250 chr2L 9227309 9227380 19 132 5.0 6.0 5.5 2.9 204 chr2L 9227176 intron tai + chr2L 9227278 intron tai + chr2L 9227380 intron tai + chr2L_19_9225001 chr2L_9225001 RAL-361 334 chr2L 9229364 9229434 chr2L 9229492 9229562 27 127 11.0 10.0 10.5 2.3 198 chr2L 9229364 intron tai + chr2L 9229463 intron tai + chr2L 9229562 intron tai + chr2L_27_9225001 chr2L_9225001 RAL-361 335 chr2L 9251097 9251170 chr2L 9251244 9251306 42 146 8.5 13.0 10.8 3.6 209 chr2L 9251097 intergenic aust -,borr - chr2L 9251202 intergenic aust -,borr - chr2L 9251306 intergenic borr -,aust - chr2L_42_9250001 chr2L_9250001 RAL-361 336 chr2L 9259173 9259203 chr2L 9259316 9259336 13 136 13.5 7.0 10.2 1.2 163 chr2L 9259173 intron Ggamma30A + chr2L 9259254 intron Ggamma30A + chr2L 9259336 intron Ggamma30A + chr2L_13_9255001 chr2L_9255001 RAL-361 337 chr2L 9259216 9259242 chr2L 9259309 9259361 14 128 5.5 5.5 5.5 2.2 145 chr2L 9259216 intron Ggamma30A + chr2L 9259288 intron Ggamma30A + chr2L 9259361 intron Ggamma30A + chr2L_14_9255001 chr2L_9255001 RAL-361 338 chr2L 9264305 9264379 chr2L 9264455 9264529 22 149 7.5 10.5 9.0 2.2 224 chr2L 9264305 intron Ggamma30A + chr2L 9264417 intron Ggamma30A + chr2L 9264529 intron Ggamma30A + chr2L_22_9260001 chr2L_9260001 RAL-361 339 chr2L 9283161 9283171 chr2L 9283288 9283298 9 127 19.5 10.0 14.8 0.6 137 chr2L 9283161 intron Ggamma30A + chr2L 9283230 intron Ggamma30A + chr2L 9283298 intron Ggamma30A + chr2L_9_9280001 chr2L_9280001 RAL-361 340 chr2L 9290722 9290761 chr2L 9290849 9290888 15 127 10.0 0.0 5.0 2.5 166 chr2L 9290722 intron Ggamma30A + chr2L 9290805 intron Ggamma30A + chr2L 9290888 intron Ggamma30A + chr2L_15_9290001 chr2L_9290001 RAL-361 341 chr2L 9310776 9310824 chr2L 9311093 9311150 21 322 11.0 7.0 9.0 2.1 374 chr2L 9310776 intergenic not near genes chr2L 9310963 intergenic not near genes chr2L 9311150 intergenic not near genes chr2L_21_9310001 chr2L_9310001 RAL-361 342 chr2L 9334967 9335026 chr2L 9335096 9335154 13 129 9.5 1.0 5.2 2.1 187 chr2L 9334967 intron Eaat1 + chr2L 9335060 intron Eaat1 + chr2L 9335154 intron Eaat1 + chr2L_13_9335001 chr2L_9335001 RAL-361 343 chr2L 9337861 9337901 chr2L 9337988 9338028 22 127 14.5 8.0 11.2 1.8 167 chr2L 9337861 intron Eaat1 + chr2L 9337944 intron Eaat1 + chr2L 9338028 intron Eaat1 + chr2L_22_9335001 chr2L_9335001 RAL-361 344 chr2L 9347567 9347593 chr2L 9347709 9347735 14 142 0.0 0.0 0.0 14.0 168 chr2L 9347567 intergenic not near genes chr2L 9347651 intergenic not near genes chr2L 9347735 intergenic not near genes chr2L_14_9345001 chr2L_9345001 RAL-361 345 chr2L 9375800 9375860 chr2L 9377247 9377317 25 1454 6.0 11.5 8.8 2.6 1517 chr2L 9375800 intron Shawl - chr2L 9376558 intron Shawl - chr2L 9377317 intron Shawl - chr2L_25_9375001 chr2L_9375001 RAL-361 346 chr2L 9385070 9385147 chr2L 9385210 9385287 24 140 9.0 7.5 8.2 2.6 217 chr2L 9385070 intron Shawl - chr2L 9385178 intron Shawl - chr2L 9385287 intron Shawl - chr2L_24_9385001 chr2L_9385001 RAL-361 347 chr2L 9387201 9387276 chr2L 9387349 9387424 23 148 3.0 3.0 3.0 5.8 223 chr2L 9387201 intron Shawl - chr2L 9387312 intron Shawl - chr2L 9387424 intron,5` UTR Shawl -,Aldh + chr2L_23_9385001 chr2L_9385001 RAL-361 348 chr2L 9391493 9391559 chr2L 9391710 9391776 28 217 12.0 9.5 10.8 2.4 283 chr2L 9391493 intron,3` UTR Shawl -,Aldh + chr2L 9391634 intron Shawl - chr2L 9391776 intron Shawl - chr2L_28_9390001 chr2L_9390001 RAL-361 349 chr2L 9393451 9393522 chr2L 9396468 9396539 jockey 28 3016 5.5 6.0 5.8 4.1 3088 chr2L 9393451 intron Shawl - chr2L 9394995 intron Shawl - chr2L 9396539 intron Shawl - chr2L_28_9390001 chr2L_9390001 RAL-361 350 chr2L 9412603 9412677 chr2L 9412797 9412871 29 194 7.0 8.0 7.5 3.4 268 chr2L 9412603 intron Shawl - chr2L 9412737 intron Shawl - chr2L 9412871 intron Shawl - chr2L_29_9410001 chr2L_9410001 RAL-361 351 chr2L 9446257 9446298 chr2L 9446391 9446432 9 134 0.0 0.0 0.0 9.0 175 chr2L 9446257 intron numb + chr2L 9446344 intron numb + chr2L 9446432 intron numb + chr2L_9_9445001 chr2L_9445001 RAL-361 352 chr2L 9464829 9464966 chr2L 9464957 9465092 9 133 0.0 0.0 0.0 9.0 263 chr2L 9464829 intergenic not near genes chr2L 9464960 intergenic not near genes chr2L 9465092 intergenic not near genes chr2L_9_9460001 chr2L_9460001 RAL-361 353 chr2L 9490473 9490540 chr2L 9490603 9490659 32 128 4.5 4.5 4.5 5.8 186 chr2L 9490473 intergenic not near genes chr2L 9490566 intergenic not near genes chr2L 9490659 intergenic not near genes chr2L_32_9490001 chr2L_9490001 RAL-361 354 chr2L 9527276 9527309 chr2L 9527408 9527441 18 132 4.5 6.0 5.2 2.9 165 chr2L 9527276 intron Oatp30B + chr2L 9527358 intron Oatp30B + chr2L 9527441 intron Oatp30B + chr2L_18_9525001 chr2L_9525001 RAL-361 355 chr2L 9679422 9679442 chr2L 9679558 9679562 4 132 14.5 0.0 7.2 0.5 140 chr2L 9679422 intergenic not near genes chr2L 9679492 intergenic not near genes chr2L 9679562 intergenic not near genes chr2L_4_9675001 chr2L_9675001 RAL-361 356 chr2L 9713328 9713352 chr2L 9713457 9713481 12 129 12.0 9.0 10.5 1.0 153 chr2L 9713328 3` UTR Nckx30C - chr2L 9713404 3` UTR Nckx30C - chr2L 9713481 3` UTR Nckx30C - chr2L_12_9710001 chr2L_9710001 RAL-361 357 chr2L 9719741 9719770 chr2L 9719874 9719903 16 133 2.0 3.0 2.5 4.6 162 chr2L 9719741 intron Nckx30C - chr2L 9719822 intron Nckx30C - chr2L 9719903 intron Nckx30C - chr2L_16_9715001 chr2L_9715001 RAL-361 358 chr2L 9730924 9731005 chr2L 9731057 9731138 29 133 5.5 8.5 7.0 3.6 214 chr2L 9730924 intron,3` UTR Nckx30C -,CG13116 + chr2L 9731031 intron Nckx30C - chr2L 9731138 intron Nckx30C - chr2L_29_9730001 chr2L_9730001 RAL-361 359 chr2L 9817348 9817405 chr2L 9817458 9817532 31 124 9.5 9.0 9.2 3.0 184 chr2L 9817348 intron nAChRalpha6 - chr2L 9817440 intron nAChRalpha6 - chr2L 9817532 intron nAChRalpha6 - chr2L_31_9815001 chr2L_9815001 RAL-361 360 chr2L 9837382 9837445 chr2L 9837510 9837573 29 128 5.5 0.0 2.8 7.6 191 chr2L 9837382 intron nAChRalpha6 - chr2L 9837478 intron nAChRalpha6 - chr2L 9837573 intron nAChRalpha6 - chr2L_29_9835001 chr2L_9835001 RAL-361 361 chr2L 9865751 9865813 chr2L 9865928 9865997 16 178 8.0 5.0 6.5 2.1 246 chr2L 9865751 intron nAChRalpha6 - chr2L 9865874 intron nAChRalpha6 - chr2L 9865997 intron nAChRalpha6 - chr2L_16_9865001 chr2L_9865001 RAL-361 362 chr2L 9871481 9871530 chr2L 9871618 9871660 12 132 0.0 0.0 0.0 12.0 179 chr2L 9871481 intron nAChRalpha6 - chr2L 9871570 intron nAChRalpha6 - chr2L 9871660 intron nAChRalpha6 - chr2L_12_9870001 chr2L_9870001 RAL-361 363 chr2L 9973683 9973755 chr2L 9980852 9980903 HMS-Beagle 23 7167 9.0 6.0 7.5 2.7 7220 chr2L 9973683 intergenic not near genes chr2L 9977293 intergenic not near genes chr2L 9980903 intergenic not near genes chr2L_23_9975001 chr2L_9975001 RAL-361 364 chr2L 9986307 9986369 chr2L 9986452 9986514 24 139 7.0 7.0 7.0 3.0 207 chr2L 9986307 intron bib + chr2L 9986410 intron bib + chr2L 9986514 intron bib + chr2L_24_9985001 chr2L_9985001 RAL-361 365 chr2L 10051678 10051749 chr2L 10051813 10051884 18 133 6.5 9.5 8.0 2.0 206 chr2L 10051678 5` UTR CR44874 + chr2L 10051781 5` UTR CR44874 + chr2L 10051884 5` UTR CR44874 + chr2L_18_10050001 chr2L_10050001 RAL-361 366 chr2L 10094434 10094480 chr2L 10094555 10094608 18 124 5.0 6.5 5.8 2.6 174 chr2L 10094434 intron CG44153 - chr2L 10094521 intron CG44153 - chr2L 10094608 intron CG44153 - chr2L_18_10090001 chr2L_10090001 RAL-361 367 chr2L 10095587 10095661 chr2L 10095717 10095791 33 129 11.0 9.0 10.0 3.0 204 chr2L 10095587 intron CG44153 - chr2L 10095689 intron CG44153 - chr2L 10095791 intron CG44153 - chr2L_33_10095001 chr2L_10095001 RAL-361 368 chr2L 10102128 10102193 chr2L 10102259 10102282 34 134 9.0 10.5 9.8 3.1 154 chr2L 10102128 intron,intron CG44153 -,CG34109 + chr2L 10102205 intron,intron CG44153 -,CG34109 + chr2L 10102282 intron,intron CG44153 -,CG34109 + chr2L_34_10100001 chr2L_10100001 RAL-361 369 chr2L 10138141 10138191 chr2L 10143435 10143486 Rt1c 23 5294 8.5 17.0 12.8 1.7 5345 chr2L 10138141 intron CG44153 - chr2L 10140814 intron CG44153 - chr2L 10143486 intron CG44153 - chr2L_23_10140001 chr2L_10140001 RAL-361 370 chr2L 10156284 10156349 chr2L 10163804 10163869 blood 31 7518 7.5 6.5 7.0 3.9 7585 chr2L 10156284 intron,3` UTR CG44153 -,CG4839 + chr2L 10160076 intron CG44153 - chr2L 10163869 intron CG44153 - chr2L_31_10160001 chr2L_10160001 RAL-361 371 chr2L 10170519 10170562 chr2L 10170773 10170822 18 256 4.0 10.0 7.0 2.2 303 chr2L 10170519 intron CG44153 - chr2L 10170670 intron CG44153 - chr2L 10170822 intron CG44153 - chr2L_18_10170001 chr2L_10170001 RAL-361 372 chr2L 10180536 10180565 chr2L 10180673 10180695 12 134 11.5 0.0 5.8 1.8 159 chr2L 10180536 intergenic CG44153 - chr2L 10180616 intergenic CG44153 - chr2L 10180695 intergenic CG44153 - chr2L_12_10180001 chr2L_10180001 RAL-361 373 chr2L 10191921 10191943 chr2L 10192048 10192070 8 125 8.5 17.5 13.0 0.6 149 chr2L 10191921 intron Sur - chr2L 10191996 intron Sur - chr2L 10192070 intron Sur - chr2L_8_10190001 chr2L_10190001 RAL-361 374 chr2L 10258386 10258437 chr2L 10258519 10258572 24 134 6.0 14.0 10.0 2.2 186 chr2L 10258386 exon Pten - chr2L 10258479 intron Pten - chr2L 10258572 exon Pten - chr2L_24_10255001 chr2L_10255001 RAL-361 375 chr2L 10294628 10294689 chr2L 10294764 10294825 19 136 7.0 6.0 6.5 2.5 197 chr2L 10294628 exon Hand - chr2L 10294726 intron Hand - chr2L 10294825 intron Hand - chr2L_19_10290001 chr2L_10290001 RAL-361 376 chr2L 10407717 10407773 chr2L 10407848 10407873 11 128 1.0 10.5 5.8 1.6 156 chr2L 10407717 intron Ir31a + chr2L 10407795 intron Ir31a + chr2L 10407873 exon Ir31a + chr2L_11_10405001 chr2L_10405001 RAL-361 377 chr2L 10458179 10458213 chr2L 10458325 10458359 15 146 0.0 0.0 0.0 15.0 180 chr2L 10458179 intron LM408 + chr2L 10458269 intron LM408 + chr2L 10458359 intron LM408 + chr2L_15_10455001 chr2L_10455001 RAL-361 378 chr2L 10474343 10474390 chr2L 10474467 10474491 9 124 13.0 6.5 9.8 0.8 148 chr2L 10474343 5` UTR RluA-1 - chr2L 10474417 intergenic RluA-1 - chr2L 10474491 intergenic RluA-1 - chr2L_9_10470001 chr2L_10470001 RAL-361 379 chr2L 10474395 10474409 chr2L 10474463 10474540 5 118 9.0 6.5 7.8 0.6 145 chr2L 10474395 intergenic RluA-1 - chr2L 10474468 intergenic RluA-1 - chr2L 10474540 intergenic RluA-1 - chr2L_5_10470001 chr2L_10470001 RAL-361 380 chr2L 10480261 10480334 chr2L 10480389 10480480 15 130 3.5 0.0 1.8 5.4 219 chr2L 10480261 intron RluA-2 + chr2L 10480370 intron RluA-2 + chr2L 10480480 intron RluA-2 + chr2L_15_10480001 chr2L_10480001 RAL-361 381 chr2L 10490240 10490302 chr2L 10490359 10490434 34 130 12.0 8.5 10.2 3.0 194 chr2L 10490240 3` UTR,3` UTR CG6144 +,CG13144 - chr2L 10490337 3` UTR,3` UTR CG6144 +,CG13144 - chr2L 10490434 3` UTR,3` UTR CG6144 +,CG13144 - chr2L_34_10490001 chr2L_10490001 RAL-361 382 chr2L 10495296 10495437 chr2L 10495423 10495563 14 132 2.5 0.0 1.2 6.4 267 chr2L 10495296 intron Myo31DF - chr2L 10495430 intron Myo31DF - chr2L 10495563 intron Myo31DF - chr2L_14_10495001 chr2L_10495001 RAL-361 383 chr2L 10538869 10538913 chr2L 10539199 10539243 13 330 9.0 8.5 8.8 1.3 374 chr2L 10538869 intergenic not near genes chr2L 10539056 intergenic not near genes chr2L 10539243 intergenic not near genes chr2L_13_10535001 chr2L_10535001 RAL-361 384 chr2L 10540823 10540870 chr2L 10540951 10540998 13 128 3.5 7.0 5.2 2.1 175 chr2L 10540823 intergenic not near genes chr2L 10540910 intergenic not near genes chr2L 10540998 intergenic not near genes chr2L_13_10540001 chr2L_10540001 RAL-361 385 chr2L 10554249 10554252 chr2L 10554388 10554391 4 139 0.0 0.0 0.0 4.0 142 chr2L 10554249 intron Trim9 + chr2L 10554320 intron Trim9 + chr2L 10554391 intron Trim9 + chr2L_4_10550001 chr2L_10550001 RAL-361 386 chr2L 10572660 10572727 chr2L 10572791 10572858 35 130 11.5 10.0 10.8 3.0 198 chr2L 10572660 intron Trim9 + chr2L 10572759 intron Trim9 + chr2L 10572858 intron Trim9 + chr2L_35_10570001 chr2L_10570001 RAL-361 387 chr2L 10589022 10589081 chr2L 10589148 10589207 17 125 1.0 5.5 3.2 4.0 185 chr2L 10589022 intron Trim9 + chr2L 10589114 intron Trim9 + chr2L 10589207 intron Trim9 + chr2L_17_10585001 chr2L_10585001 RAL-361 388 chr2L 10592792 10592869 chr2L 10600502 10600581 opus 28 7711 6.5 5.5 6.0 4.0 7789 chr2L 10592792 intron Trim9 + chr2L 10596686 intron Trim9 + chr2L 10600581 intron Trim9 + chr2L_28_10595001 chr2L_10595001 RAL-361 389 chr2L 10624866 10624946 chr2L 10625012 10625091 29 145 0.0 8.0 4.0 5.8 225 chr2L 10624866 intron Trim9 + chr2L 10624978 intron Trim9 + chr2L 10625091 intron Trim9 + chr2L_29_10620001 chr2L_10620001 RAL-361 390 chr2L 10634712 10634781 chr2L 10634842 10634911 25 130 3.5 9.5 6.5 3.3 199 chr2L 10634712 intron CG7329 - chr2L 10634812 intron CG7329 - chr2L 10634911 intron CG7329 - chr2L_25_10630001 chr2L_10630001 RAL-361 391 chr2L 10640597 10640670 chr2L 10640736 10640809 29 137 7.0 7.0 7.0 3.6 212 chr2L 10640597 exon CG31872 + chr2L 10640703 exon CG31872 + chr2L 10640809 exon CG31872 + chr2L_29_10640001 chr2L_10640001 RAL-361 392 chr2L 10656540 10656608 chr2L 10656666 10656734 23 125 8.5 7.0 7.8 2.6 194 chr2L 10656540 intergenic not near genes chr2L 10656637 intergenic not near genes chr2L 10656734 intergenic not near genes chr2L_23_10655001 chr2L_10655001 RAL-361 393 chr2L 10679012 10679025 chr2L 10679130 10679159 8 136 13.0 5.5 9.2 0.8 147 chr2L 10679012 exon CG17104 + chr2L 10679086 exon CG17104 + chr2L 10679159 exon CG17104 + chr2L_8_10675001 chr2L_10675001 RAL-361 394 chr2L 10688498 10688554 chr2L 10688624 10688680 19 125 10.0 8.0 9.0 1.9 182 chr2L 10688498 intergenic CG7294 - chr2L 10688589 intergenic CG7294 - chr2L 10688680 intergenic CG7294 - chr2L_19_10685001 chr2L_10685001 RAL-361 395 chr2L 10704869 10704944 chr2L 10705014 10705089 21 144 8.5 7.0 7.8 2.4 220 chr2L 10704869 intron,exon Lip2 -,CG6415 + chr2L 10704979 intron Lip2 - chr2L 10705089 exon Lip2 - chr2L_21_10700001 chr2L_10700001 RAL-361 396 chr2L 10721244 10721310 chr2L 10721373 10721439 19 129 11.5 6.5 9.0 1.9 195 chr2L 10721244 intergenic not near genes chr2L 10721342 intergenic not near genes chr2L 10721439 intergenic not near genes chr2L_19_10720001 chr2L_10720001 RAL-361 397 chr2L 10762365 10762405 chr2L 10762492 10762532 19 126 12.5 4.0 8.2 2.1 167 chr2L 10762365 intron CG6495 + chr2L 10762448 intron CG6495 + chr2L 10762532 exon CG6495 + chr2L_19_10760001 chr2L_10760001 RAL-361 398 chr2L 10762412 10762423 chr2L 10762509 10762550 9 121 9.0 6.5 7.8 1.0 138 chr2L 10762412 intron CG6495 + chr2L 10762481 intron CG6495 + chr2L 10762550 exon CG6495 + chr2L_9_10760001 chr2L_10760001 RAL-361 399 chr2L 10777175 10777212 chr2L 10777337 10777370 7 161 23.0 5.0 14.0 0.5 195 chr2L 10777175 intron CG31869 - chr2L 10777272 intron CG31869 - chr2L 10777370 intron CG31869 - chr2L_7_10775001 chr2L_10775001 RAL-361 400 chr2L 10787932 10788029 chr2L 10788075 10788155 13 136 3.5 8.0 5.8 1.9 223 chr2L 10787932 intron CG31869 - chr2L 10788044 intron CG31869 - chr2L 10788155 intron CG31869 - chr2L_13_10785001 chr2L_10785001 RAL-361 401 chr2L 10789638 10789718 chr2L 10789793 10789873 37 154 8.5 7.0 7.8 4.2 235 chr2L 10789638 intron CG31869 - chr2L 10789756 intron CG31869 - chr2L 10789873 intron CG31869 - chr2L_37_10785001 chr2L_10785001 RAL-361 402 chr2L 10803738 10803802 chr2L 10803874 10803933 24 136 2.5 11.5 7.0 3.0 195 chr2L 10803738 intergenic not near genes chr2L 10803836 intergenic Nos - chr2L 10803933 intergenic Nos - chr2L_24_10800001 chr2L_10800001 RAL-361 403 chr2L 10817236 10817261 chr2L 10817367 10817372 4 126 11.5 9.5 10.5 0.3 136 chr2L 10817236 intron Nos - chr2L 10817304 intron Nos - chr2L 10817372 intron Nos - chr2L_4_10815001 chr2L_10815001 RAL-361 404 chr2L 10849590 10849601 chr2L 10849914 10849925 6 324 29.5 9.0 19.2 0.3 335 chr2L 10849590 5` UTR porin - chr2L 10849758 5` UTR porin - chr2L 10849925 5` UTR porin - chr2L_6_10845001 chr2L_10845001 RAL-361 405 chr2L 10849604 10849665 chr2L 10849909 10849983 28 320 9.0 9.0 9.0 2.8 379 chr2L 10849604 5` UTR porin - chr2L 10849794 5` UTR porin - chr2L 10849983 5` UTR porin - chr2L_28_10845001 chr2L_10845001 RAL-361 406 chr2L 10850086 10850158 chr2L 10850208 10850289 27 130 7.5 4.0 5.8 4.0 203 chr2L 10850086 5` UTR porin - chr2L 10850188 5` UTR,5` UTR porin -,CG43129 + chr2L 10850289 5` UTR,intron porin -,CG43129 + chr2L_27_10850001 chr2L_10850001 RAL-361 407 chr2L 10850914 10850988 chr2L 10851044 10851120 27 131 8.0 2.5 5.2 4.4 206 chr2L 10850914 intron CG43129 + chr2L 10851017 intron CG43129 + chr2L 10851120 intron CG43129 + chr2L_27_10850001 chr2L_10850001 RAL-361 408 chr2L 10852136 10852171 chr2L 10852275 10852310 14 139 9.0 18.0 13.5 1.0 174 chr2L 10852136 intron CG43129 + chr2L 10852223 intron CG43129 + chr2L 10852310 intron CG43129 + chr2L_14_10850001 chr2L_10850001 RAL-361 409 chr2L 10862805 10862833 chr2L 10864468 10864480 Rt1c 8 1656 17.0 8.0 12.5 0.6 1675 chr2L 10862805 3` UTR CR43807 - chr2L 10863642 intron CR43807 - chr2L 10864480 3` UTR CR43807 - chr2L_8_10860001 chr2L_10860001 RAL-361 410 chr2L 10862838 10862866 chr2L 10864461 10864515 Rt1c 15 1654 10.0 7.5 8.8 1.5 1677 chr2L 10862838 3` UTR CR43807 - chr2L 10863676 intron CR43807 - chr2L 10864515 3` UTR CR43807 - chr2L_15_10860001 chr2L_10860001 RAL-361 411 chr2L 10876540 10876562 chr2L 10883646 10883668 297 4 7103 9.0 16.5 12.8 0.3 7128 chr2L 10876540 intergenic not near genes chr2L 10880104 intergenic not near genes chr2L 10883668 intergenic not near genes chr2L_4_10880001 chr2L_10880001 RAL-361 412 chr2L 10912940 10913001 chr2L 10913071 10913130 12 126 7.0 6.5 6.8 1.5 190 chr2L 10912940 intergenic not near genes chr2L 10913035 intergenic not near genes chr2L 10913130 intergenic not near genes chr2L_12_10910001 chr2L_10910001 RAL-361 413 chr2L 10914760 10914834 chr2L 10914901 10914944 26 138 6.5 8.5 7.5 3.1 184 chr2L 10914760 intergenic not near genes chr2L 10914852 intergenic not near genes chr2L 10914944 intergenic not near genes chr2L_26_10910001 chr2L_10910001 RAL-361 414 chr2L 10918532 10918569 chr2L 10918701 10918738 12 169 6.0 3.0 4.5 2.2 206 chr2L 10918532 intron dpr2 - chr2L 10918635 intron dpr2 - chr2L 10918738 intron dpr2 - chr2L_12_10915001 chr2L_10915001 RAL-361 415 chr2L 10945041 10945102 chr2L 10945168 10945218 18 120 6.5 6.0 6.2 2.5 177 chr2L 10945041 intron dpr2 - chr2L 10945130 intron dpr2 - chr2L 10945218 intron dpr2 - chr2L_18_10945001 chr2L_10945001 RAL-361 416 chr2L 10946909 10946968 chr2L 10956174 10956233 roo 21 9264 13.5 11.0 12.2 1.6 9324 chr2L 10946909 intron dpr2 - chr2L 10951571 intron dpr2 - chr2L 10956233 intron dpr2 - chr2L_21_10950001 chr2L_10950001 RAL-361 417 chr2L 11055015 11055077 chr2L 11055150 11055212 25 135 6.5 9.5 8.0 2.8 197 chr2L 11055015 intron Samuel - chr2L 11055114 intron Samuel - chr2L 11055212 intron Samuel - chr2L_25_11055001 chr2L_11055001 RAL-361 418 chr2L 11074020 11074077 chr2L 11074166 11074219 7 144 4.0 0.0 2.0 2.3 199 chr2L 11074020 intergenic CR45725 - chr2L 11074120 intergenic CR45725 - chr2L 11074219 intergenic CR45725 - chr2L_7_11070001 chr2L_11070001 RAL-361 419 chr2L 11097827 11097895 chr2L 11098008 11098076 33 179 8.0 9.0 8.5 3.5 249 chr2L 11097827 exon Ge-1 - chr2L 11097952 exon Ge-1 - chr2L 11098076 exon Ge-1 - chr2L_33_11095001 chr2L_11095001 RAL-361 420 chr2L 11183739 11183812 chr2L 11183885 11183958 49 146 8.5 9.5 9.0 4.9 219 chr2L 11183739 intron Ca-beta - chr2L 11183848 intron Ca-beta - chr2L 11183958 intron Ca-beta - chr2L_49_11180001 chr2L_11180001 RAL-361 421 chr2L 11198373 11198396 chr2L 11198600 11198623 8 227 0.0 11.0 5.5 1.2 250 chr2L 11198373 intron Ca-beta - chr2L 11198498 intron Ca-beta - chr2L 11198623 intron Ca-beta - chr2L_8_11195001 chr2L_11195001 RAL-361 422 chr2L 11201646 11201652 chr2L 11201775 11201781 4 129 7.0 0.0 3.5 0.9 135 chr2L 11201646 intron Ca-beta - chr2L 11201714 intron Ca-beta - chr2L 11201781 intron Ca-beta - chr2L_4_11200001 chr2L_11200001 RAL-361 423 chr2L 11201654 11201727 chr2L 11201774 11201862 5 128 0.0 0.0 0.0 5.0 208 chr2L 11201654 intron Ca-beta - chr2L 11201758 intron Ca-beta - chr2L 11201862 intron Ca-beta - chr2L_5_11200001 chr2L_11200001 RAL-361 424 chr2L 11224011 11224085 chr2L 11224172 11224246 25 161 9.0 4.0 6.5 3.3 235 chr2L 11224011 intron ab + chr2L 11224128 intron ab + chr2L 11224246 intron ab + chr2L_25_11220001 chr2L_11220001 RAL-361 425 chr2L 11292335 11292407 chr2L 11292466 11292536 25 131 7.0 7.5 7.2 3.0 201 chr2L 11292335 intergenic not near genes chr2L 11292436 intergenic not near genes chr2L 11292536 intergenic not near genes chr2L_25_11290001 chr2L_11290001 RAL-361 426 chr2L 11315222 11315271 chr2L 11317676 11317712 G2 12 2450 5.5 5.0 5.2 1.9 2490 chr2L 11315222 intergenic not near genes chr2L 11316467 intergenic not near genes chr2L 11317712 intergenic not near genes chr2L_12_11315001 chr2L_11315001 RAL-361 427 chr2L 11339687 11339703 chr2L 11339814 11339830 7 126 15.5 7.0 11.2 0.6 143 chr2L 11339687 intergenic not near genes chr2L 11339758 intergenic not near genes chr2L 11339830 intergenic not near genes chr2L_7_11335001 chr2L_11335001 RAL-361 428 chr2L 11339707 11339743 chr2L 11339813 11339870 11 124 9.0 7.0 8.0 1.2 163 chr2L 11339707 intergenic not near genes chr2L 11339788 intergenic not near genes chr2L 11339870 intergenic not near genes chr2L_11_11335001 chr2L_11335001 RAL-361 429 chr2L 11356359 11356416 chr2L 11356520 11356577 27 160 9.0 1.5 5.2 4.4 218 chr2L 11356359 intergenic not near genes chr2L 11356468 intergenic not near genes chr2L 11356577 intergenic not near genes chr2L_27_11355001 chr2L_11355001 RAL-361 430 chr2L 11379944 11379954 chr2L 11380076 11380086 4 132 8.5 0.0 4.2 0.8 142 chr2L 11379944 intergenic not near genes chr2L 11380015 intergenic not near genes chr2L 11380086 intergenic not near genes chr2L_4_11380001 chr2L_11380001 RAL-361 431 chr2L 11380589 11380633 chr2L 11380701 11380760 10 120 3.5 8.5 6.0 1.4 171 chr2L 11380589 intergenic not near genes chr2L 11380674 intergenic not near genes chr2L 11380760 intergenic not near genes chr2L_10_11380001 chr2L_11380001 RAL-361 432 chr2L 11395000 11395050 chr2L 11395132 11395182 25 131 5.5 8.0 6.8 3.2 182 chr2L 11395000 intergenic not near genes chr2L 11395091 intergenic not near genes chr2L 11395182 intergenic not near genes chr2L_25_11395001 chr2L_11395001 RAL-361 433 chr2L 11399473 11399526 chr2L 11399603 11399653 14 128 5.5 0.0 2.8 3.7 180 chr2L 11399473 intergenic not near genes chr2L 11399563 intergenic not near genes chr2L 11399653 intergenic not near genes chr2L_14_11395001 chr2L_11395001 RAL-361 434 chr2L 11418618 11418686 chr2L 11418736 11418794 20 127 5.0 6.5 5.8 2.9 176 chr2L 11418618 intergenic not near genes chr2L 11418706 intergenic not near genes chr2L 11418794 intergenic not near genes chr2L_20_11415001 chr2L_11415001 RAL-361 435 chr2L 11491091 11491154 chr2L 11491210 11491278 22 125 5.0 8.0 6.5 2.9 187 chr2L 11491091 intergenic not near genes chr2L 11491184 intergenic not near genes chr2L 11491278 intergenic not near genes chr2L_22_11490001 chr2L_11490001 RAL-361 436 chr2L 11492978 11492996 chr2L 11493153 11493186 7 188 0.0 4.5 2.2 2.2 208 chr2L 11492978 intergenic not near genes chr2L 11493082 intergenic not near genes chr2L 11493186 intergenic not near genes chr2L_7_11490001 chr2L_11490001 RAL-361 437 chr2L 11537162 11537207 chr2L 11537271 11537318 12 121 4.5 9.5 7.0 1.5 156 chr2L 11537162 intergenic CG43438 + chr2L 11537240 intergenic CG43438 + chr2L 11537318 intergenic CG43438 + chr2L_12_11535001 chr2L_11535001 RAL-361 438 chr2L 11537712 11537773 chr2L 11537879 11537940 22 167 9.5 9.0 9.2 2.2 228 chr2L 11537712 intergenic not near genes chr2L 11537826 intergenic not near genes chr2L 11537940 intergenic not near genes chr2L_22_11535001 chr2L_11535001 RAL-361 439 chr2L 11540539 11540602 chr2L 11547994 11548054 Tabor 13 7455 8.5 9.5 9.0 1.3 7515 chr2L 11540539 intergenic not near genes chr2L 11544296 intergenic not near genes chr2L 11548054 intergenic not near genes chr2L_13_11540001 chr2L_11540001 RAL-361 440 chr2L 11555360 11555428 chr2L 11555530 11555597 22 169 5.5 0.0 2.8 5.8 237 chr2L 11555360 intergenic not near genes chr2L 11555478 intergenic not near genes chr2L 11555597 intergenic not near genes chr2L_22_11555001 chr2L_11555001 RAL-361 441 chr2L 11563596 11563627 chr2L 11568850 11568881 copia 15 5254 17.5 10.5 14.0 1.0 5285 chr2L 11563596 intergenic not near genes chr2L 11566238 intergenic not near genes chr2L 11568881 intergenic not near genes chr2L_15_11565001 chr2L_11565001 RAL-361 442 chr2L 11563629 11563656 chr2L 11568848 11568910 copia 7 5249 12.5 10.0 11.2 0.6 5281 chr2L 11563629 intergenic not near genes chr2L 11566270 intergenic not near genes chr2L 11568910 intergenic not near genes chr2L_7_11565001 chr2L_11565001 RAL-361 443 chr2L 11591385 11591458 chr2L 11591522 11591595 19 137 3.0 6.0 4.5 3.5 210 chr2L 11591385 intron,3` UTR kek2 +,Acp33A - chr2L 11591490 intron,3` UTR kek2 +,Acp33A - chr2L 11591595 intron,exon kek2 +,Acp33A - chr2L_19_11590001 chr2L_11590001 RAL-361 444 chr2L 11610503 11610576 chr2L 11610632 11610704 22 127 5.5 8.5 7.0 2.8 201 chr2L 11610503 intron kek2 + chr2L 11610604 intron,3` UTR kek2 +,spag4 - chr2L 11610704 intron,intron kek2 +,spag4 - chr2L_22_11610001 chr2L_11610001 RAL-361 445 chr2L 11614017 11614027 chr2L 11615562 11615572 hopper2 4 1545 17.0 8.5 12.8 0.3 1555 chr2L 11614017 intron kek2 + chr2L 11614794 intron kek2 + chr2L 11615572 intron kek2 + chr2L_4_11610001 chr2L_11610001 RAL-361 446 chr2L 11614029 11614077 chr2L 11615559 11615622 hopper2 13 1531 7.5 7.5 7.5 1.5 1593 chr2L 11614029 intron kek2 + chr2L 11614826 intron kek2 + chr2L 11615622 intron kek2 + chr2L_13_11610001 chr2L_11610001 RAL-361 447 chr2L 11661142 11661152 chr2L 11661280 11661290 5 138 17.5 7.0 12.2 0.4 148 chr2L 11661142 intergenic CR44497 - chr2L 11661216 intergenic CR44497 -,CR44479 - chr2L 11661290 intergenic CR44497 -,CR44479 - chr2L_5_11660001 chr2L_11660001 RAL-361 448 chr2L 11661153 11661210 chr2L 11661274 11661348 13 137 6.0 5.5 5.8 1.9 195 chr2L 11661153 intergenic CR44497 - chr2L 11661250 intergenic CR44497 -,CR44479 - chr2L 11661348 intergenic CR44479 -,CR44497 - chr2L_13_11660001 chr2L_11660001 RAL-361 449 chr2L 11665814 11665868 chr2L 11665949 11666003 12 132 1.5 15.0 8.2 1.3 189 chr2L 11665814 intergenic CR44481 + chr2L 11665908 intergenic CR44481 + chr2L 11666003 intergenic CR44481 + chr2L_12_11665001 chr2L_11665001 RAL-361 450 chr2L 11672092 11672166 chr2L 11672249 11672323 32 157 4.5 5.5 5.0 5.3 231 chr2L 11672092 intergenic not near genes chr2L 11672208 intergenic not near genes chr2L 11672323 intergenic not near genes chr2L_32_11670001 chr2L_11670001 RAL-361 451 chr2L 11676288 11676295 chr2L 11676417 11676424 7 129 9.0 0.0 4.5 1.3 136 chr2L 11676288 intergenic not near genes chr2L 11676356 intergenic not near genes chr2L 11676424 intergenic not near genes chr2L_7_11675001 chr2L_11675001 RAL-361 452 chr2L 11681736 11681745 chr2L 11681873 11681882 5 137 18.0 0.0 9.0 0.5 146 chr2L 11681736 intergenic not near genes chr2L 11681809 intergenic not near genes chr2L 11681882 intergenic not near genes chr2L_5_11680001 chr2L_11680001 RAL-361 453 chr2L 11682927 11682976 chr2L 11683146 11683195 13 218 7.0 7.5 7.2 1.6 268 chr2L 11682927 intergenic not near genes chr2L 11683061 intergenic not near genes chr2L 11683195 intergenic not near genes chr2L_13_11680001 chr2L_11680001 RAL-361 454 chr2L 11704589 11704667 chr2L 11704715 11704793 12 124 4.5 12.5 8.5 1.3 204 chr2L 11704589 intergenic not near genes chr2L 11704691 intergenic not near genes chr2L 11704793 intergenic not near genes chr2L_12_11700001 chr2L_11700001 RAL-361 455 chr2L 11713465 11713512 chr2L 11720983 11721030 blood 24 7517 11.0 7.0 9.0 2.4 7565 chr2L 11713465 intergenic not near genes chr2L 11717248 intergenic not near genes chr2L 11721030 intergenic CR44143 + chr2L_24_11715001 chr2L_11715001 RAL-361 456 chr2L 11770553 11770630 chr2L 11770690 11770767 34 137 6.5 6.5 6.5 4.5 214 chr2L 11770553 intergenic not near genes chr2L 11770660 intergenic not near genes chr2L 11770767 intergenic not near genes chr2L_34_11770001 chr2L_11770001 RAL-361 457 chr2L 11780984 11781185 chr2L 11781118 11781311 15 131 0.0 0.0 0.0 15.0 327 chr2L 11780984 intergenic not near genes chr2L 11781148 intergenic not near genes chr2L 11781311 intergenic not near genes chr2L_15_11780001 chr2L_11780001 RAL-361 458 chr2L 11941677 11941745 chr2L 11941843 11941911 38 166 8.0 12.0 10.0 3.5 234 chr2L 11941677 intergenic not near genes chr2L 11941794 intergenic not near genes chr2L 11941911 intergenic not near genes chr2L_38_11940001 chr2L_11940001 RAL-361 459 chr2L 12026754 12026772 chr2L 12026985 12027002 10 231 7.0 0.0 3.5 2.2 248 chr2L 12026754 intergenic not near genes chr2L 12026878 intergenic not near genes chr2L 12027002 intergenic dmGlut + chr2L_10_12025001 chr2L_12025001 RAL-361 460 chr2L 12031341 12031419 chr2L 12031472 12031519 35 130 10.5 1.5 6.0 5.0 178 chr2L 12031341 intron dmGlut + chr2L 12031430 intron dmGlut + chr2L 12031519 intron dmGlut + chr2L_35_12030001 chr2L_12030001 RAL-361 461 chr2L 12058149 12058212 chr2L 12058282 12058345 23 131 5.5 9.5 7.5 2.7 196 chr2L 12058149 exon,3` UTR CG34164 +,RpL7-like + chr2L 12058247 3` UTR,3` UTR CG34164 +,RpL7-like + chr2L 12058345 3` UTR Rab3-GAP - chr2L_23_12055001 chr2L_12055001 RAL-361 462 chr2L 12067292 12067345 chr2L 12074394 12074447 297 26 7102 14.5 7.5 11.0 2.2 7155 chr2L 12067292 intergenic not near genes chr2L 12070870 intergenic not near genes chr2L 12074447 intergenic not near genes chr2L_26_12070001 chr2L_12070001 RAL-361 463 chr2L 12121915 12121920 chr2L 12122090 12122095 5 175 5.5 11.0 8.2 0.5 180 chr2L 12121915 intron CG17211 + chr2L 12122005 intron CG17211 + chr2L 12122095 intron CG17211 + chr2L_5_12120001 chr2L_12120001 RAL-361 464 chr2L 12132688 12132734 chr2L 12132824 12132870 16 136 1.0 11.0 6.0 2.3 182 chr2L 12132688 intron rho-6 - chr2L 12132779 intron rho-6 - chr2L 12132870 intron rho-6 - chr2L_16_12130001 chr2L_12130001 RAL-361 465 chr2L 12153887 12153961 chr2L 12154014 12154088 25 125 4.0 4.5 4.2 4.8 201 chr2L 12153887 exon CG31760 + chr2L 12153988 intron CG31760 + chr2L 12154088 intron CG31760 + chr2L_25_12150001 chr2L_12150001 RAL-361 466 chr2L 12190549 12190613 chr2L 12190769 12190833 30 218 7.0 10.5 8.8 3.1 284 chr2L 12190549 intron aret + chr2L 12190691 intron aret + chr2L 12190833 intron aret + chr2L_30_12190001 chr2L_12190001 RAL-361 467 chr2L 12269369 12269398 chr2L 12269497 12269526 10 128 13.0 11.0 12.0 0.8 157 chr2L 12269369 intron aret + chr2L 12269448 intron aret + chr2L 12269526 intron aret + chr2L_10_12265001 chr2L_12265001 RAL-361 468 chr2L 12272119 12272134 chr2L 12272247 12272262 10 128 9.5 9.0 9.2 1.0 143 chr2L 12272119 intron aret + chr2L 12272190 intron aret + chr2L 12272262 intron aret + chr2L_10_12270001 chr2L_12270001 RAL-361 469 chr2L 12272135 12272179 chr2L 12272241 12272300 9 125 3.0 9.0 6.0 1.3 165 chr2L 12272135 intron aret + chr2L 12272218 intron aret + chr2L 12272300 intron aret + chr2L_9_12270001 chr2L_12270001 RAL-361 470 chr2L 12275147 12275172 chr2L 12275284 12275309 8 137 9.0 8.0 8.5 0.8 162 chr2L 12275147 intron aret + chr2L 12275228 intron aret + chr2L 12275309 intron aret + chr2L_8_12275001 chr2L_12275001 RAL-361 471 chr2L 12305364 12305437 chr2L 12305502 12305575 26 137 4.5 6.5 5.5 4.0 211 chr2L 12305364 intron aret + chr2L 12305470 intron aret + chr2L 12305575 intron aret + chr2L_26_12305001 chr2L_12305001 RAL-361 472 chr2L 12366813 12366886 chr2L 12366949 12367022 30 136 8.5 9.5 9.0 3.0 209 chr2L 12366813 intron bru-2 + chr2L 12366918 intron bru-2 + chr2L 12367022 intron bru-2 + chr2L_30_12365001 chr2L_12365001 RAL-361 473 chr2L 12410962 12411013 chr2L 12411091 12411142 22 127 12.0 0.5 6.2 3.1 180 chr2L 12410962 intron vir-1 - chr2L 12411052 intron vir-1 - chr2L 12411142 intron vir-1 - chr2L_22_12410001 chr2L_12410001 RAL-361 474 chr2L 12420938 12421002 chr2L 12421319 12421383 15 379 9.0 5.5 7.2 1.8 445 chr2L 12420938 intron vir-1 - chr2L 12421160 intron vir-1 - chr2L 12421383 intron vir-1 - chr2L_15_12420001 chr2L_12420001 RAL-361 475 chr2L 12424344 12424377 chr2L 12424470 12424503 10 126 5.0 17.0 11.0 0.8 159 chr2L 12424344 intergenic not near genes chr2L 12424424 intergenic CG6405 + chr2L 12424503 intergenic CG6405 + chr2L_10_12420001 chr2L_12420001 RAL-361 476 chr2L 12458246 12458274 chr2L 12458379 12458407 17 133 12.5 5.0 8.8 1.7 161 chr2L 12458246 intron bun - chr2L 12458326 intron bun - chr2L 12458407 intron bun - chr2L_17_12455001 chr2L_12455001 RAL-361 477 chr2L 12466198 12466242 chr2L 12466334 12466378 14 136 4.0 0.0 2.0 4.7 180 chr2L 12466198 intron bun - chr2L 12466288 intron bun - chr2L 12466378 intron bun - chr2L_14_12465001 chr2L_12465001 RAL-361 478 chr2L 12471086 12471135 chr2L 12471212 12471261 13 124 5.5 9.5 7.5 1.5 175 chr2L 12471086 intron bun - chr2L 12471174 intron bun - chr2L 12471261 intron bun - chr2L_13_12470001 chr2L_12470001 RAL-361 479 chr2L 12481328 12481403 chr2L 12481460 12481535 16 132 5.5 7.5 6.5 2.1 207 chr2L 12481328 intron bun - chr2L 12481432 intron bun - chr2L 12481535 intron bun - chr2L_16_12480001 chr2L_12480001 RAL-361 480 chr2L 12497403 12497420 chr2L 12497536 12497553 6 133 6.0 0.0 3.0 1.5 150 chr2L 12497403 intron bun - chr2L 12497478 intron bun - chr2L 12497553 intron bun - chr2L_6_12495001 chr2L_12495001 RAL-361 481 chr2L 12500571 12500617 chr2L 12500697 12500743 16 125 5.5 8.5 7.0 2.0 172 chr2L 12500571 intron bun - chr2L 12500657 intron bun - chr2L 12500743 intron bun - chr2L_16_12500001 chr2L_12500001 RAL-361 482 chr2L 12529206 12529409 chr2L 12529408 12529513 19 199 0.0 0.0 0.0 19.0 307 chr2L 12529206 intron bun - chr2L 12529360 intron bun - chr2L 12529513 intron bun - chr2L_19_12525001 chr2L_12525001 RAL-361 483 chr2L 12558274 12558344 chr2L 12565453 12565523 HMS-Beagle 24 7178 3.5 11.0 7.2 2.9 7249 chr2L 12558274 intergenic not near genes chr2L 12561898 intergenic not near genes chr2L 12565523 intergenic not near genes chr2L_24_12560001 chr2L_12560001 RAL-361 484 chr2L 12619855 12619906 chr2L 12619981 12620032 18 123 8.5 6.5 7.5 2.1 177 chr2L 12619855 intron,intron nub +,Ref2 - chr2L 12619944 intron,intron nub +,Ref2 - chr2L 12620032 intron,intron nub +,Ref2 - chr2L_18_12615001 chr2L_12615001 RAL-361 485 chr2L 12625178 12625218 chr2L 12625318 12625349 6 132 4.5 1.0 2.8 1.6 171 chr2L 12625178 intron,intron nub +,Ref2 - chr2L 12625264 intron,intron nub +,Ref2 - chr2L 12625349 intron,intron nub +,Ref2 - chr2L_6_12625001 chr2L_12625001 RAL-361 486 chr2L 12652989 12653047 chr2L 12653116 12653174 29 125 11.5 7.0 9.2 2.8 185 chr2L 12652989 intergenic not near genes chr2L 12653082 intergenic not near genes chr2L 12653174 intergenic not near genes chr2L_29_12650001 chr2L_12650001 RAL-361 487 chr2L 12693803 12693872 chr2L 12693930 12693999 21 127 10.0 11.0 10.5 1.8 196 chr2L 12693803 exon CG6153 + chr2L 12693901 3` UTR,3` UTR CG6153 +,CG5780 - chr2L 12693999 exon CG5780 - chr2L_21_12690001 chr2L_12690001 RAL-361 488 chr2L 12728885 12728947 chr2L 12729167 12729238 pogo 21 290 12.5 7.0 9.8 1.9 353 chr2L 12728885 intron MRP + chr2L 12729062 intron MRP + chr2L 12729238 exon MRP + chr2L_21_12725001 chr2L_12725001 RAL-361 489 chr2L 12731014 12731082 chr2L 12735831 12735899 F-element 31 4817 10.0 11.5 10.8 2.6 4885 chr2L 12731014 intron MRP + chr2L 12733456 intron MRP + chr2L 12735899 intron MRP + chr2L_31_12730001 chr2L_12730001 RAL-361 490 chr2L 12739125 12739183 chr2L 12743952 12744004 Doc 18 4827 7.0 5.0 6.0 2.6 4879 chr2L 12739125 exon MRP + chr2L 12741564 intron MRP + chr2L 12744004 exon MRP + chr2L_18_12740001 chr2L_12740001 RAL-361 491 chr2L 12763779 12763869 chr2L 12764041 12764131 BS 17 262 0.0 0.0 0.0 17.0 352 chr2L 12763779 intergenic not near genes chr2L 12763955 intergenic not near genes chr2L 12764131 intergenic not near genes chr2L_17_12760001 chr2L_12760001 RAL-361 492 chr2L 12781757 12781815 chr2L 12789250 12789308 Quasimodo 21 7492 10.0 10.0 10.0 1.9 7551 chr2L 12781757 intergenic not near genes chr2L 12785532 intergenic not near genes chr2L 12789308 intergenic not near genes chr2L_21_12785001 chr2L_12785001 RAL-361 493 chr2L 12791568 12791620 chr2L 12795291 12795340 F-element 25 3722 9.5 11.0 10.2 2.2 3772 chr2L 12791568 intergenic not near genes chr2L 12793454 intergenic not near genes chr2L 12795340 intergenic not near genes chr2L_25_12790001 chr2L_12790001 RAL-361 494 chr2L 12807394 12807454 chr2L 12807523 12807583 20 128 9.5 7.0 8.2 2.2 189 chr2L 12807394 intergenic CR43818 - chr2L 12807488 intergenic CR43818 - chr2L 12807583 intergenic CR43818 - chr2L_20_12805001 chr2L_12805001 RAL-361 495 chr2L 12815065 12815123 chr2L 12815390 12815449 11 326 6.5 7.5 7.0 1.4 384 chr2L 12815065 intergenic not near genes chr2L 12815257 intergenic not near genes chr2L 12815449 intergenic not near genes chr2L_11_12815001 chr2L_12815001 RAL-361 496 chr2L 12859222 12859294 chr2L 12859631 12859704 32 407 9.0 13.0 11.0 2.7 482 chr2L 12859222 intergenic not near genes chr2L 12859463 intergenic not near genes chr2L 12859704 intergenic not near genes chr2L_32_12855001 chr2L_12855001 RAL-361 497 chr2L 12861662 12861726 chr2L 12863179 12863207 hobo 22 1510 0.0 15.0 7.5 2.6 1545 chr2L 12861662 intergenic not near genes chr2L 12862434 intergenic not near genes chr2L 12863207 intergenic not near genes chr2L_22_12860001 chr2L_12860001 RAL-361 498 chr2L 12893985 12894023 chr2L 12895502 12895509 hobo 19 1512 16.0 6.5 11.2 1.6 1524 chr2L 12893985 intergenic not near genes chr2L 12894747 intergenic not near genes chr2L 12895509 intergenic not near genes chr2L_19_12890001 chr2L_12890001 RAL-361 499 chr2L 12894029 12894036 chr2L 12895501 12895553 hobo 4 1489 11.5 6.0 8.8 0.4 1524 chr2L 12894029 intergenic not near genes chr2L 12894791 intergenic not near genes chr2L 12895553 intergenic not near genes chr2L_4_12890001 chr2L_12890001 RAL-361 500 chr2L 12894041 12894049 chr2L 12895497 12895530 hobo 6 1492 9.0 5.5 7.2 0.7 1489 chr2L 12894041 intergenic not near genes chr2L 12894786 intergenic not near genes chr2L 12895530 intergenic not near genes chr2L_6_12890001 chr2L_12890001 RAL-361 501 chr2L 12905429 12905494 chr2L 12905563 12905628 17 134 11.0 5.5 8.2 1.8 199 chr2L 12905429 intergenic not near genes chr2L 12905528 intergenic not near genes chr2L 12905628 intergenic not near genes chr2L_17_12905001 chr2L_12905001 RAL-361 502 chr2L 12933805 12933877 chr2L 12941322 12941369 blood 28 7515 4.5 6.0 5.2 4.5 7564 chr2L 12933805 intergenic not near genes chr2L 12937587 intergenic not near genes chr2L 12941369 intergenic not near genes chr2L_28_12935001 chr2L_12935001 RAL-361 503 chr2L 12944888 12944962 chr2L 12945087 12945124 12 195 5.0 2.5 3.8 2.5 236 chr2L 12944888 intergenic not near genes chr2L 12945006 intergenic not near genes chr2L 12945124 intergenic not near genes chr2L_12_12945001 chr2L_12945001 RAL-361 504 chr2L 12975778 12975846 chr2L 12975910 12975978 24 132 9.0 6.5 7.8 2.7 200 chr2L 12975778 intron Vha68-2 + chr2L 12975878 intron Vha68-2 + chr2L 12975978 intron Vha68-2 + chr2L_24_12975001 chr2L_12975001 RAL-361 505 chr2L 13204270 13204309 chr2L 13204419 13204428 8 141 17.0 13.0 15.0 0.5 158 chr2L 13204270 exon Pect + chr2L 13204349 intron Pect + chr2L 13204428 intron Pect + chr2L_8_13200001 chr2L_13200001 RAL-361 506 chr2L 13215340 13215399 chr2L 13215665 13215723 20 325 12.5 7.5 10.0 1.8 383 chr2L 13215340 5` UTR kek4 - chr2L 13215532 intergenic kek4 -,snRNA:U2:34ABb +,snRNA:U2:34ABc + chr2L 13215723 intergenic snRNA:U2:34ABb +,snRNA:U2:34ABc +,kek4 - chr2L_20_13215001 chr2L_13215001 RAL-361 507 chr2L 13241911 13241918 chr2L 13244345 13244347 BS 5 2433 17.5 3.5 10.5 0.4 2436 chr2L 13241911 5` UTR CR45330 + chr2L 13243129 intron CR45330 + chr2L 13244347 5` UTR CR45330 + chr2L_5_13240001 chr2L_13240001 RAL-361 508 chr2L 13316888 13316903 chr2L 13317020 13317036 7 132 4.0 10.5 7.2 0.9 148 chr2L 13316888 intron CG43778 - chr2L 13316962 intron CG43778 - chr2L 13317036 intron CG43778 - chr2L_7_13315001 chr2L_13315001 RAL-361 509 chr2L 13326175 13326220 chr2L 13327267 13327312 19 1090 9.0 1.0 5.0 3.2 1137 chr2L 13326175 intron CG43778 - chr2L 13326744 intron CG43778 - chr2L 13327312 intron CG43778 - chr2L_19_13325001 chr2L_13325001 RAL-361 510 chr2L 13330016 13330039 chr2L 13330144 13330167 11 128 8.5 0.0 4.2 2.1 151 chr2L 13330016 intron CG43778 - chr2L 13330092 intron CG43778 - chr2L 13330167 intron CG43778 - chr2L_11_13330001 chr2L_13330001 RAL-361 511 chr2L 13405609 13405666 chr2L 13410456 13410513 Doc 17 4846 9.0 15.0 12.0 1.3 4904 chr2L 13405609 exon CG7110 + chr2L 13408061 intron CG7110 + chr2L 13410513 exon CG7110 + chr2L_17_13405001 chr2L_13405001 RAL-361 512 chr2L 13449418 13449481 chr2L 13456903 13456967 Quasimodo 21 7485 7.5 7.0 7.2 2.6 7549 chr2L 13449418 intron,intron CG42784 +,Hsp60D - chr2L 13453192 intron CG42784 + chr2L 13456967 intron CG42784 + chr2L_21_13450001 chr2L_13450001 RAL-361 513 chr2L 13481423 13481466 chr2L 13482070 13482123 jockey 19 655 12.0 12.5 12.2 1.4 700 chr2L 13481423 intron CG42784 + chr2L 13481773 intron CG42784 + chr2L 13482123 intron CG42784 + chr2L_19_13480001 chr2L_13480001 RAL-361 514 chr2L 13522244 13522289 chr2L 13527589 13527646 Transpac 18 5355 1.5 14.0 7.8 2.0 5402 chr2L 13522244 intron B4 - chr2L 13524945 intron B4 - chr2L 13527646 intron B4 - chr2L_18_13520001 chr2L_13520001 RAL-361 515 chr2L 13556579 13556584 chr2L 13556710 13556715 4 131 9.5 0.0 4.8 0.7 136 chr2L 13556579 intron kuz + chr2L 13556647 intron kuz + chr2L 13556715 intron kuz + chr2L_4_13555001 chr2L_13555001 RAL-361 516 chr2L 13556599 13556608 chr2L 13556729 13556738 5 130 5.0 0.0 2.5 1.4 139 chr2L 13556599 intron kuz + chr2L 13556668 intron kuz + chr2L 13556738 intron kuz + chr2L_5_13555001 chr2L_13555001 RAL-361 517 chr2L 13684221 13684289 chr2L 13684347 13684415 18 124 4.0 9.5 6.8 2.3 194 chr2L 13684221 exon CG31814 - chr2L 13684318 intron CG31814 - chr2L 13684415 exon CG31814 - chr2L_18_13680001 chr2L_13680001 RAL-361 518 chr2L 13715915 13715985 chr2L 13716043 13716113 32 126 13.0 6.0 9.5 3.0 198 chr2L 13715915 intron CG31814 - chr2L 13716014 intron CG31814 - chr2L 13716113 intron CG31814 - chr2L_32_13715001 chr2L_13715001 RAL-361 519 chr2L 13720025 13720083 chr2L 13720177 13720243 23 159 8.0 5.0 6.5 3.1 218 chr2L 13720025 intergenic not near genes chr2L 13720134 intergenic not near genes chr2L 13720243 intergenic not near genes chr2L_23_13720001 chr2L_13720001 RAL-361 520 chr2L 13761768 13761825 chr2L 13762929 13762981 Doc 20 1161 7.5 10.5 9.0 2.0 1213 chr2L 13761768 intron TM9SF4 + chr2L 13762374 intron TM9SF4 + chr2L 13762981 intron TM9SF4 + chr2L_20_13760001 chr2L_13760001 RAL-361 521 chr2L 13800134 13800198 chr2L 13800288 13800352 29 154 8.5 10.0 9.2 2.8 218 chr2L 13800134 intergenic Sec71 + chr2L 13800243 intergenic not near genes chr2L 13800352 intergenic not near genes chr2L_29_13800001 chr2L_13800001 RAL-361 522 chr2L 13853046 13853118 chr2L 13862246 13862318 roo 19 9200 11.5 9.0 10.2 1.7 9272 chr2L 13853046 intron CenG1A + chr2L 13857682 intron CenG1A + chr2L 13862318 intron CenG1A + chr2L_19_13855001 chr2L_13855001 RAL-361 523 chr2L 13913550 13913600 chr2L 13913713 13913763 23 162 10.0 11.0 10.5 2.0 213 chr2L 13913550 intergenic not near genes chr2L 13913656 intergenic not near genes chr2L 13913763 intergenic not near genes chr2L_23_13910001 chr2L_13910001 RAL-361 524 chr2L 13944367 13944435 chr2L 13944537 13944605 21 170 4.0 9.5 6.8 2.7 238 chr2L 13944367 intron Ance-3 + chr2L 13944486 intron Ance-3 + chr2L 13944605 intron Ance-3 + chr2L_21_13940001 chr2L_13940001 RAL-361 525 chr2L 14017721 14017790 chr2L 14017863 14017932 22 142 7.5 6.5 7.0 2.8 211 chr2L 14017721 intron bgm + chr2L 14017826 intron bgm + chr2L 14017932 intron bgm + chr2L_22_14015001 chr2L_14015001 RAL-361 526 chr2L 14033874 14033916 chr2L 14034036 14034078 21 161 5.5 16.0 10.8 1.8 204 chr2L 14033874 3` UTR CR45284 - chr2L 14033976 3` UTR CR45284 - chr2L 14034078 3` UTR CR45284 - chr2L_21_14030001 chr2L_14030001 RAL-361 527 chr2L 14056763 14056837 chr2L 14056899 14056961 37 134 5.5 10.5 8.0 4.1 198 chr2L 14056763 intron nAChRalpha5 + chr2L 14056862 intron nAChRalpha5 + chr2L 14056961 intron nAChRalpha5 + chr2L_37_14055001 chr2L_14055001 RAL-361 528 chr2L 14109471 14109542 chr2L 14109612 14109683 39 139 7.0 7.0 7.0 4.9 212 chr2L 14109471 intergenic CG15293 -,CG31769 - chr2L 14109577 intergenic CG31769 -,CG15293 - chr2L 14109683 3` UTR CG31769 - chr2L_39_14105001 chr2L_14105001 RAL-361 529 chr2L 14152570 14152605 chr2L 14152711 14152715 19 139 8.0 18.5 13.2 1.3 145 chr2L 14152570 intron CG17341 + chr2L 14152642 intron CG17341 + chr2L 14152715 intron CG17341 + chr2L_19_14150001 chr2L_14150001 RAL-361 530 chr2L 14160644 14160719 chr2L 14160775 14160855 30 135 6.0 6.0 6.0 4.3 211 chr2L 14160644 intergenic CG17341 +,CG43332 - chr2L 14160750 intergenic CG17341 +,CG43332 - chr2L 14160855 intergenic CG17341 +,CG43332 - chr2L_30_14160001 chr2L_14160001 RAL-361 531 chr2L 14168448 14168509 chr2L 14168623 14168689 37 178 7.0 9.5 8.2 4.0 241 chr2L 14168448 intron CG43333 - chr2L 14168568 intron CG43333 - chr2L 14168689 intron CG43333 - chr2L_37_14165001 chr2L_14165001 RAL-361 532 chr2L 14173815 14173885 chr2L 14173945 14174021 28 133 8.0 4.5 6.2 3.9 206 chr2L 14173815 intron CG43333 - chr2L 14173918 intron CG43333 - chr2L 14174021 intron CG43333 - chr2L_28_14170001 chr2L_14170001 RAL-361 533 chr2L 14229586 14229643 chr2L 14229721 14229786 11 141 0.0 7.5 3.8 2.3 200 chr2L 14229586 intron Dyrk2 - chr2L 14229686 intron Dyrk2 - chr2L 14229786 intron Dyrk2 - chr2L_11_14225001 chr2L_14225001 RAL-361 534 chr2L 14409991 14410064 chr2L 14410136 14410209 26 144 6.0 6.0 6.0 3.7 218 chr2L 14409991 5` UTR CR44733 + chr2L 14410100 intergenic CR44733 + chr2L 14410209 intergenic CR44733 + chr2L_26_14410001 chr2L_14410001 RAL-361 535 chr2L 14436554 14436620 chr2L 14436721 14436787 22 167 6.0 6.0 6.0 3.1 233 chr2L 14436554 intergenic not near genes chr2L 14436670 intergenic not near genes chr2L 14436787 intergenic not near genes chr2L_22_14435001 chr2L_14435001 RAL-361 536 chr2L 14465568 14465618 chr2L 14469089 14469145 hopper2 15 3527 9.5 5.5 7.5 1.8 3577 chr2L 14465568 intergenic not near genes chr2L 14467356 intergenic not near genes chr2L 14469145 intergenic not near genes chr2L_15_14465001 chr2L_14465001 RAL-361 537 chr2L 14503392 14503435 chr2L 14503521 14503562 15 128 6.0 7.5 6.8 1.9 170 chr2L 14503392 intergenic not near genes chr2L 14503477 intergenic not near genes chr2L 14503562 intergenic not near genes chr2L_15_14500001 chr2L_14500001 RAL-361 538 chr2L 14524575 14524649 chr2L 14525123 14525174 19 545 7.5 4.0 5.8 2.8 599 chr2L 14524575 intron CG33648 + chr2L 14524874 intron CG33648 + chr2L 14525174 exon CG33648 + chr2L_19_14520001 chr2L_14520001 RAL-361 539 chr2L 14537582 14537646 chr2L 14537717 14537782 12 136 6.5 8.0 7.2 1.5 200 chr2L 14537582 intergenic not near genes chr2L 14537682 intergenic not near genes chr2L 14537782 intergenic not near genes chr2L_12_14535001 chr2L_14535001 RAL-361 540 chr2L 14570670 14570721 chr2L 14570801 14570852 12 131 8.5 6.5 7.5 1.4 182 chr2L 14570670 intergenic not near genes chr2L 14570761 intergenic not near genes chr2L 14570852 intergenic not near genes chr2L_12_14570001 chr2L_14570001 RAL-361 541 chr2L 14588344 14588364 chr2L 14588548 14588568 12 204 1.5 7.5 4.5 2.2 224 chr2L 14588344 intergenic CG42680 - chr2L 14588456 intergenic CG42680 - chr2L 14588568 intergenic CG42680 - chr2L_12_14585001 chr2L_14585001 RAL-361 542 chr2L 14588368 14588383 chr2L 14588547 14588561 6 192 1.5 7.5 4.5 1.1 193 chr2L 14588368 intergenic CG42680 - chr2L 14588464 intergenic CG42680 - chr2L 14588561 intergenic CG42680 - chr2L_6_14585001 chr2L_14585001 RAL-361 543 chr2L 14588387 14588404 chr2L 14588539 14588607 11 196 1.0 5.5 3.2 2.6 220 chr2L 14588387 intergenic CG42680 - chr2L 14588497 intergenic CG42680 - chr2L 14588607 intergenic CG42680 - chr2L_11_14585001 chr2L_14585001 RAL-361 544 chr2L 14588626 14588670 chr2L 14588967 14589011 5 341 6.0 5.0 5.5 0.8 385 chr2L 14588626 intergenic CG42680 - chr2L 14588818 intergenic not near genes chr2L 14589011 intergenic not near genes chr2L_5_14585001 chr2L_14585001 RAL-361 545 chr2L 14642528 14642592 chr2L 14651741 14651805 roo 25 9213 9.0 8.0 8.5 2.6 9277 chr2L 14642528 intron osp - chr2L 14647166 intron osp - chr2L 14651805 intron osp - chr2L_25_14645001 chr2L_14645001 RAL-361 546 chr2L 14707161 14707235 chr2L 14707330 14707404 13 168 6.0 0.0 3.0 3.2 243 chr2L 14707161 intergenic not near genes chr2L 14707282 intergenic not near genes chr2L 14707404 intergenic not near genes chr2L_13_14705001 chr2L_14705001 RAL-361 547 chr2L 14771808 14771855 chr2L 14771940 14771959 7 129 0.0 9.5 4.8 1.2 151 chr2L 14771808 intergenic not near genes chr2L 14771884 intergenic not near genes chr2L 14771959 intergenic not near genes chr2L_7_14770001 chr2L_14770001 RAL-361 548 chr2L 14772657 14772738 chr2L 14772806 14772887 22 149 5.5 6.5 6.0 3.1 230 chr2L 14772657 intergenic not near genes chr2L 14772772 intergenic not near genes chr2L 14772887 intergenic not near genes chr2L_22_14770001 chr2L_14770001 RAL-361 549 chr2L 14781512 14781582 chr2L 14781663 14781733 24 150 7.0 5.0 6.0 3.4 221 chr2L 14781512 intergenic not near genes chr2L 14781622 intergenic not near genes chr2L 14781733 intergenic not near genes chr2L_24_14780001 chr2L_14780001 RAL-361 550 chr2L 14803837 14803900 chr2L 14809082 14809153 copia 14 5246 0.0 7.5 3.8 2.9 5316 chr2L 14803837 intergenic not near genes chr2L 14806495 intergenic not near genes chr2L 14809153 intergenic not near genes chr2L_14_14805001 chr2L_14805001 RAL-361 551 chr2L 14840927 14841000 chr2L 14841065 14841101 30 135 7.0 8.0 7.5 3.5 174 chr2L 14840927 3` UTR CR43805 - chr2L 14841014 3` UTR CR43805 - chr2L 14841101 3` UTR CR43805 - chr2L_30_14840001 chr2L_14840001 RAL-361 552 chr2L 14843452 14843474 chr2L 14843807 14843813 9 352 16.5 5.0 10.8 0.8 361 chr2L 14843452 intergenic CG42682 + chr2L 14843632 intergenic not near genes chr2L 14843813 intergenic not near genes chr2L_9_14840001 chr2L_14840001 RAL-361 553 chr2L 14843475 14843517 chr2L 14843804 14843872 18 349 7.0 5.0 6.0 2.6 397 chr2L 14843475 intergenic CG42682 + chr2L 14843674 intergenic not near genes chr2L 14843872 intergenic not near genes chr2L_18_14840001 chr2L_14840001 RAL-361 554 chr2L 14856946 14856970 chr2L 14857085 14857101 11 138 17.5 5.5 11.5 0.9 155 chr2L 14856946 intergenic not near genes chr2L 14857024 intergenic not near genes chr2L 14857101 intergenic not near genes chr2L_11_14855001 chr2L_14855001 RAL-361 555 chr2L 14856971 14857009 chr2L 14857079 14857148 13 131 10.5 4.0 7.2 1.6 177 chr2L 14856971 intergenic not near genes chr2L 14857060 intergenic not near genes chr2L 14857148 intergenic not near genes chr2L_13_14855001 chr2L_14855001 RAL-361 556 chr2L 14887641 14887688 chr2L 14887769 14887816 17 128 10.5 7.0 8.8 1.7 175 chr2L 14887641 intergenic not near genes chr2L 14887728 intergenic not near genes chr2L 14887816 intergenic not near genes chr2L_17_14885001 chr2L_14885001 RAL-361 557 chr2L 14889912 14889976 chr2L 14890387 14890451 jockey 17 473 5.0 5.0 5.0 2.8 539 chr2L 14889912 intergenic not near genes chr2L 14890182 intergenic not near genes chr2L 14890451 intergenic not near genes chr2L_17_14890001 chr2L_14890001 RAL-361 558 chr2L 14947393 14947468 chr2L 14947672 14947725 27 278 8.5 7.5 8.0 3.0 332 chr2L 14947393 intron CG42313 - chr2L 14947559 intron CG42313 - chr2L 14947725 intron CG42313 - chr2L_27_14945001 chr2L_14945001 RAL-361 559 chr2L 14984339 14984397 chr2L 14991991 14992049 opus 21 7651 11.5 11.5 11.5 1.7 7710 chr2L 14984339 intron mol - chr2L 14988194 intron mol - chr2L 14992049 intron mol - chr2L_21_14985001 chr2L_14985001 RAL-361 560 chr2L 15013102 15013173 chr2L 15013256 15013332 26 154 7.0 9.0 8.0 2.9 230 chr2L 15013102 intergenic CR43856 - chr2L 15013217 intergenic not near genes chr2L 15013332 intergenic not near genes chr2L_26_15010001 chr2L_15010001 RAL-361 561 chr2L 15014582 15014653 chr2L 15014711 15014782 17 124 1.0 8.0 4.5 3.1 200 chr2L 15014582 intergenic not near genes chr2L 15014682 intergenic not near genes chr2L 15014782 intergenic not near genes chr2L_17_15010001 chr2L_15010001 RAL-361 562 chr2L 15066530 15066607 chr2L 15066672 15066718 40 140 7.0 10.5 8.8 4.1 188 chr2L 15066530 intron,intron vas +,vig - chr2L 15066624 intron,intron vas +,vig - chr2L 15066718 intron,intron vas +,vig - chr2L_40_15065001 chr2L_15065001 RAL-361 563 chr2L 15082616 15082690 chr2L 15082760 15082834 22 143 7.5 4.0 5.8 3.2 218 chr2L 15082616 intron CG15270 + chr2L 15082725 intron CG15270 + chr2L 15082834 intron CG15270 + chr2L_22_15080001 chr2L_15080001 RAL-361 564 chr2L 15099901 15099944 chr2L 15100038 15100092 7 146 8.5 0.0 4.2 1.3 191 chr2L 15099901 intergenic not near genes chr2L 15099996 intergenic not near genes chr2L 15100092 intergenic not near genes chr2L_7_15095001 chr2L_15095001 RAL-361 565 chr2L 15103824 15103862 chr2L 15103971 15104009 20 147 11.5 16.5 14.0 1.3 185 chr2L 15103824 intergenic not near genes chr2L 15103916 intergenic not near genes chr2L 15104009 intergenic not near genes chr2L_20_15100001 chr2L_15100001 RAL-361 566 chr2L 15122542 15122604 chr2L 15122688 15122727 12 141 0.0 6.5 3.2 2.9 185 chr2L 15122542 intergenic not near genes chr2L 15122634 intergenic not near genes chr2L 15122727 intergenic not near genes chr2L_12_15120001 chr2L_15120001 RAL-361 567 chr2L 15138729 15138804 chr2L 15138861 15138934 19 133 0.0 7.5 3.8 4.0 205 chr2L 15138729 intergenic not near genes chr2L 15138832 intergenic not near genes chr2L 15138934 intergenic not near genes chr2L_19_15135001 chr2L_15135001 RAL-361 568 chr2L 15161201 15161272 chr2L 15161387 15161458 31 182 8.5 8.5 8.5 3.3 257 chr2L 15161201 intergenic CR44770 + chr2L 15161330 intergenic CR44770 + chr2L 15161458 intergenic CR44770 +,CG4168 - chr2L_31_15160001 chr2L_15160001 RAL-361 569 chr2L 15226326 15226394 chr2L 15226452 15226520 19 123 10.5 4.5 7.5 2.2 194 chr2L 15226326 intergenic not near genes chr2L 15226423 intergenic not near genes chr2L 15226520 intergenic not near genes chr2L_19_15225001 chr2L_15225001 RAL-361 570 chr2L 15244019 15244072 chr2L 15244182 15244235 25 162 2.0 16.0 9.0 2.5 216 chr2L 15244019 intron ZnT35C - chr2L 15244127 intron ZnT35C - chr2L 15244235 intron ZnT35C - chr2L_25_15240001 chr2L_15240001 RAL-361 571 chr2L 15446014 15446076 chr2L 15453533 15453595 blood 32 7519 6.5 6.5 6.5 4.3 7581 chr2L 15446014 intergenic not near genes chr2L 15449804 intergenic not near genes chr2L 15453595 intergenic not near genes chr2L_32_15445001 chr2L_15445001 RAL-361 572 chr2L 15458217 15458223 chr2L 15458366 15458372 4 149 0.0 0.0 0.0 4.0 155 chr2L 15458217 intergenic not near genes chr2L 15458294 intergenic not near genes chr2L 15458372 intergenic not near genes chr2L_4_15455001 chr2L_15455001 RAL-361 573 chr2L 15527409 15527440 chr2L 15527537 15527568 8 128 0.5 12.5 6.5 1.1 159 chr2L 15527409 intergenic not near genes chr2L 15527488 intergenic not near genes chr2L 15527568 intergenic not near genes chr2L_8_15525001 chr2L_15525001 RAL-361 574 chr2L 15567343 15567395 chr2L 15567481 15567533 13 137 6.5 9.5 8.0 1.4 190 chr2L 15567343 intron kek3 + chr2L 15567438 intron kek3 + chr2L 15567533 intron kek3 + chr2L_13_15565001 chr2L_15565001 RAL-361 575 chr2L 15586374 15586436 chr2L 15593475 15593537 297 19 7101 8.0 7.5 7.8 2.2 7163 chr2L 15586374 intergenic not near genes chr2L 15589956 intergenic not near genes chr2L 15593537 intergenic not near genes chr2L_19_15585001 chr2L_15585001 RAL-361 576 chr2L 15598722 15598786 chr2L 15598858 15598922 26 136 7.5 0.5 4.0 5.2 200 chr2L 15598722 intergenic not near genes chr2L 15598822 intergenic not near genes chr2L 15598922 intergenic not near genes chr2L_26_15595001 chr2L_15595001 RAL-361 577 chr2L 15749967 15750024 chr2L 15750130 15750187 14 163 8.0 0.0 4.0 2.8 220 chr2L 15749967 intron l(2)35Di - chr2L 15750077 intron l(2)35Di - chr2L 15750187 intron l(2)35Di - chr2L_14_15750001 chr2L_15750001 RAL-361 578 chr2L 15750268 15750327 chr2L 15750402 15750461 4 134 0.0 6.5 3.2 1.0 193 chr2L 15750268 intron l(2)35Di - chr2L 15750364 intron l(2)35Di - chr2L 15750461 intron l(2)35Di - chr2L_4_15750001 chr2L_15750001 RAL-361 579 chr2L 15805591 15805606 chr2L 15805739 15805754 4 148 2.5 13.0 7.8 0.5 163 chr2L 15805591 intergenic not near genes chr2L 15805672 intergenic not near genes chr2L 15805754 intergenic not near genes chr2L_4_15805001 chr2L_15805001 RAL-361 580 chr2L 15821018 15821066 chr2L 15821162 15821216 4 146 0.0 0.0 0.0 4.0 198 chr2L 15821018 intergenic not near genes chr2L 15821117 intergenic not near genes chr2L 15821216 intergenic not near genes chr2L_4_15820001 chr2L_15820001 RAL-361 581 chr2L 15826846 15826877 chr2L 15829290 15829321 Tabor 10 2444 9.5 10.0 9.8 0.9 2475 chr2L 15826846 intergenic not near genes chr2L 15828084 intergenic not near genes chr2L 15829321 intergenic not near genes chr2L_10_15825001 chr2L_15825001 RAL-361 582 chr2L 15852004 15852071 chr2L 15852138 15852205 29 130 7.0 5.5 6.2 4.0 201 chr2L 15852004 intergenic not near genes chr2L 15852104 intergenic CG13243 + chr2L 15852205 intergenic CG13243 + chr2L_29_15850001 chr2L_15850001 RAL-361 583 chr2L 15955986 15956039 chr2L 15957503 15957556 hobo 20 1515 13.5 10.0 11.8 1.6 1570 chr2L 15955986 intron beat-Ib - chr2L 15956771 intron beat-Ib - chr2L 15957556 intron beat-Ib - chr2L_20_15955001 chr2L_15955001 RAL-361 584 chr2L 16008667 16008700 chr2L 16008795 16008828 8 128 9.5 8.5 9.0 0.8 161 chr2L 16008667 intron beat-Ic + chr2L 16008748 intron beat-Ic + chr2L 16008828 intron beat-Ic + chr2L_8_16005001 chr2L_16005001 RAL-361 585 chr2L 16027353 16027393 chr2L 16027479 16027519 5 126 21.0 10.0 15.5 0.3 166 chr2L 16027353 intron beat-Ic + chr2L 16027436 intron beat-Ic + chr2L 16027519 intron beat-Ic + chr2L_5_16025001 chr2L_16025001 RAL-361 586 chr2L 16026152 16026214 chr2L 16027862 16027924 17 1710 51.5 34.0 42.8 0.4 1772 chr2L 16026152 intron beat-Ic + chr2L 16027038 intron beat-Ic + chr2L 16027924 intron beat-Ic + chr2L_17_16025001 chr2L_16025001 RAL-361 587 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 44 145889 34.5 38.0 36.2 1.2 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_44_16140001 chr2L_16140001 RAL-361 588 chr2L 16141096 16141188 chr2L 16146367 16146445 copia 18 5264 0.0 4.5 2.2 5.6 5349 chr2L 16141096 intergenic not near genes chr2L 16143770 intergenic not near genes chr2L 16146445 intergenic not near genes chr2L_18_16140001 chr2L_16140001 RAL-361 589 chr2L 16153699 16153762 chr2L 16160817 16160880 297 20 7117 4.0 5.5 4.8 3.4 7181 chr2L 16153699 intergenic not near genes chr2L 16157290 intergenic not near genes chr2L 16160880 intergenic not near genes chr2L_20_16155001 chr2L_16155001 RAL-361 590 chr2L 16163584 16163591 chr2L 16163710 16163717 5 126 2.0 7.0 4.5 0.9 133 chr2L 16163584 intergenic not near genes chr2L 16163650 intergenic not near genes chr2L 16163717 intergenic not near genes chr2L_5_16160001 chr2L_16160001 RAL-361 591 chr2L 16202194 16202230 chr2L 16202397 16202433 4 200 27.0 29.0 28.0 0.1 239 chr2L 16202194 intergenic not near genes chr2L 16202314 intergenic not near genes chr2L 16202433 intergenic not near genes chr2L_4_16200001 chr2L_16200001 RAL-361 592 chr2L 16213288 16213295 chr2L 16213425 16213432 5 137 9.0 0.0 4.5 0.9 144 chr2L 16213288 3` UTR CG31819 + chr2L 16213360 intergenic CG31819 + chr2L 16213432 intergenic CG31819 + chr2L_5_16210001 chr2L_16210001 RAL-361 593 chr2L 9084336 9084340 chr2L 16217660 16217660 17 7133321 27.0 38.0 32.5 0.5 7133324 chr2L 9084336 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_17_12650001 chr2L_12650001 RAL-361 594 chr2L 9723025 9723026 chr2L 16217660 16217660 4 6494635 25.0 38.0 31.5 0.1 6494635 chr2L 9723025 intron Nckx30C - chr2L 12970342 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_4_12970001 chr2L_12970001 RAL-361 595 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 34 145889 34.5 38.0 36.2 0.9 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_34_16140001 chr2L_16140001 RAL-361 596 chr2L 16217660 16217660 chr2L 18622718 18622719 6 2405058 41.0 42.5 41.8 0.1 2405059 chr2L 16217660 intergenic not near genes chr2L 17420190 intron Dif - chr2L 18622719 intron MESR3 + chr2L_6_17420001 chr2L_17420001 RAL-361 597 chr2L 16242024 16242065 chr2L 16242166 16242207 8 142 8.5 0.0 4.2 1.5 183 chr2L 16242024 5` UTR CG42818 + chr2L 16242116 exon CG42818 + chr2L 16242207 exon CG42818 + chr2L_8_16240001 chr2L_16240001 RAL-361 598 chr2L 16243653 16243854 chr2L 16243780 16243999 32 140 0.5 1.0 0.8 17.8 346 chr2L 16243653 exon CG42818 + chr2L 16243826 exon CG42818 + chr2L 16243999 exon CG42818 + chr2L_32_16240001 chr2L_16240001 RAL-361 599 chr2L 16254842 16254915 chr2L 16255151 16255224 27 309 8.0 7.5 7.8 3.1 382 chr2L 16254842 intron PRL-1 - chr2L 16255033 intron PRL-1 - chr2L 16255224 intron PRL-1 - chr2L_27_16255001 chr2L_16255001 RAL-361 600 chr2L 16280240 16280260 chr2L 16281441 16281444 1360 11 1209 14.5 10.5 12.5 0.8 1204 chr2L 16280240 intron crp - chr2L 16280842 intron crp - chr2L 16281444 intron crp - chr2L_11_16280001 chr2L_16280001 RAL-361 601 chr2L 16280261 16280274 chr2L 16281440 16281489 1360 6 1203 12.0 10.5 11.2 0.5 1228 chr2L 16280261 intron crp - chr2L 16280875 intron crp - chr2L 16281489 intron crp - chr2L_6_16280001 chr2L_16280001 RAL-361 602 chr2L 16354532 16354580 chr2L 16354678 16354726 18 146 7.0 0.0 3.5 4.0 194 chr2L 16354532 3` UTR CG4455 + chr2L 16354629 intergenic CG4455 +,CaBP1 - chr2L 16354726 intergenic CaBP1 -,CG4455 + chr2L_18_16350001 chr2L_16350001 RAL-361 603 chr2L 16363911 16363970 chr2L 16364207 16364266 23 296 7.0 9.5 8.2 2.5 355 chr2L 16363911 intergenic not near genes chr2L 16364088 intergenic not near genes chr2L 16364266 intergenic not near genes chr2L_23_16360001 chr2L_16360001 RAL-361 604 chr2L 16374301 16374347 chr2L 16374412 16374478 16 129 5.5 6.0 5.8 2.4 177 chr2L 16374301 intergenic not near genes chr2L 16374390 intergenic not near genes chr2L 16374478 intergenic not near genes chr2L_16_16370001 chr2L_16370001 RAL-361 605 chr2L 16375479 16375546 chr2L 16375626 16375694 15 147 6.5 9.0 7.8 1.7 215 chr2L 16375479 intergenic not near genes chr2L 16375586 intergenic not near genes chr2L 16375694 intergenic not near genes chr2L_15_16375001 chr2L_16375001 RAL-361 606 chr2L 16386428 16386450 chr2L 16386556 16386578 7 128 0.0 11.5 5.8 1.0 150 chr2L 16386428 intergenic not near genes chr2L 16386503 intergenic not near genes chr2L 16386578 intergenic not near genes chr2L_7_16385001 chr2L_16385001 RAL-361 607 chr2L 16408101 16408154 chr2L 16408258 16408306 5 155 0.0 9.5 4.8 0.9 205 chr2L 16408101 intron CG5888 - chr2L 16408204 intron CG5888 - chr2L 16408306 intron CG5888 - chr2L_5_16405001 chr2L_16405001 RAL-361 608 chr2L 16487852 16487920 chr2L 16488012 16488080 17 160 7.0 7.0 7.0 2.1 228 chr2L 16487852 intergenic CG4580 + chr2L 16487966 intergenic CG4580 + chr2L 16488080 intergenic CG4580 + chr2L_17_16485001 chr2L_16485001 RAL-361 609 chr2L 16495318 16495324 chr2L 16495477 16495483 4 159 0.0 12.5 6.2 0.6 165 chr2L 16495318 intron Tpr2 + chr2L 16495400 intron Tpr2 + chr2L 16495483 intron Tpr2 + chr2L_4_16495001 chr2L_16495001 RAL-361 610 chr2L 16504950 16505015 chr2L 16505112 16505175 20 160 0.0 10.0 5.0 3.3 225 chr2L 16504950 intron Tpr2 + chr2L 16505062 intron Tpr2 + chr2L 16505175 intron Tpr2 + chr2L_20_16505001 chr2L_16505001 RAL-361 611 chr2L 16511918 16511968 chr2L 16519082 16519132 HMS-Beagle 25 7164 16.5 11.0 13.8 1.7 7214 chr2L 16511918 intron CG5953 - chr2L 16515525 intron CG5953 - chr2L 16519132 intron CG5953 - chr2L_25_16515001 chr2L_16515001 RAL-361 612 chr2L 16525128 16525187 chr2L 16525254 16525313 27 121 4.0 12.0 8.0 3.0 185 chr2L 16525128 intron CG5953 - chr2L 16525220 intron CG5953 - chr2L 16525313 intron CG5953 - chr2L_27_16525001 chr2L_16525001 RAL-361 613 chr2L 16570594 16570612 chr2L 16570725 16570743 8 131 7.5 0.0 3.8 1.7 149 chr2L 16570594 intron CG42389 + chr2L 16570668 intron CG42389 + chr2L 16570743 intron CG42389 + chr2L_8_16570001 chr2L_16570001 RAL-361 614 chr2L 16589796 16589825 chr2L 16589921 16589965 7 138 9.0 9.5 9.2 0.7 169 chr2L 16589796 intron CG42389 + chr2L 16589880 intron CG42389 + chr2L 16589965 intron CG42389 + chr2L_7_16585001 chr2L_16585001 RAL-361 615 chr2L 16592055 16592121 chr2L 16592310 16592375 25 253 5.0 8.0 6.5 3.3 320 chr2L 16592055 intron CG42389 + chr2L 16592215 intron CG42389 + chr2L 16592375 intron CG42389 + chr2L_25_16590001 chr2L_16590001 RAL-361 616 chr2L 16694099 16694119 chr2L 16694235 16694255 8 135 20.5 13.5 17.0 0.4 156 chr2L 16694099 intron grp + chr2L 16694177 intron grp + chr2L 16694255 intron grp + chr2L_8_16690001 chr2L_16690001 RAL-361 617 chr2L 16694124 16694156 chr2L 16694234 16694271 17 121 9.5 13.5 11.5 1.4 147 chr2L 16694124 intron grp + chr2L 16694198 intron grp + chr2L 16694271 intron grp + chr2L_17_16690001 chr2L_16690001 RAL-361 618 chr2L 16695215 16695285 chr2L 16695349 16695419 23 134 8.5 8.0 8.2 2.5 204 chr2L 16695215 intron grp + chr2L 16695317 intron grp + chr2L 16695419 intron grp + chr2L_23_16695001 chr2L_16695001 RAL-361 619 chr2L 16703618 16703650 chr2L 16703911 16703941 6 292 0.0 4.5 2.2 1.9 323 chr2L 16703618 intergenic not near genes chr2L 16703780 intergenic not near genes chr2L 16703941 intergenic CG31808 - chr2L_6_16700001 chr2L_16700001 RAL-361 620 chr2L 16728875 16728949 chr2L 16729560 16729613 26 684 7.5 5.0 6.2 3.6 738 chr2L 16728875 intergenic not near genes chr2L 16729244 intergenic not near genes chr2L 16729613 intergenic CG31812 + chr2L_26_16725001 chr2L_16725001 RAL-361 621 chr2L 16762620 16762639 chr2L 16762753 16762772 9 133 7.0 0.0 3.5 2.0 152 chr2L 16762620 intergenic not near genes chr2L 16762696 intergenic not near genes chr2L 16762772 intergenic not near genes chr2L_9_16760001 chr2L_16760001 RAL-361 622 chr2L 16764923 16764995 chr2L 16765052 16765125 25 129 5.0 5.5 5.2 4.0 202 chr2L 16764923 intergenic not near genes chr2L 16765024 intergenic not near genes chr2L 16765125 intergenic not near genes chr2L_25_16765001 chr2L_16765001 RAL-361 623 chr2L 16809623 16809656 chr2L 16809800 16809834 7 178 0.0 0.0 0.0 7.0 211 chr2L 16809623 intron,intron CG13280 -,CG13272 + chr2L 16809728 intron,intron CG13280 -,CG13272 + chr2L 16809834 intron,intron CG13280 -,CG13272 + chr2L_7_16805001 chr2L_16805001 RAL-361 624 chr2L 16852380 16852441 chr2L 16852508 16852569 11 128 12.0 1.0 6.5 1.5 189 chr2L 16852380 intergenic CG31810 - chr2L 16852474 intergenic CG31810 - chr2L 16852569 intergenic CG31810 - chr2L_11_16850001 chr2L_16850001 RAL-361 625 chr2L 16866988 16867036 chr2L 16867133 16867181 28 144 0.0 12.5 6.2 3.9 193 chr2L 16866988 intergenic not near genes chr2L 16867084 intergenic not near genes chr2L 16867181 intergenic not near genes chr2L_28_16865001 chr2L_16865001 RAL-361 626 chr2L 16873052 16873056 chr2L 16873165 16873185 6 124 18.5 7.0 12.8 0.4 133 chr2L 16873052 intron CR31781 + chr2L 16873118 intron CR31781 + chr2L 16873185 intron CR31781 + chr2L_6_16870001 chr2L_16870001 RAL-361 627 chr2L 16873061 16873105 chr2L 16873164 16873174 11 113 7.5 7.0 7.2 1.3 113 chr2L 16873061 intron CR31781 + chr2L 16873118 intron CR31781 + chr2L 16873174 intron CR31781 + chr2L_11_16870001 chr2L_16870001 RAL-361 628 chr2L 16919961 16920037 chr2L 16920090 16920166 29 128 8.0 11.0 9.5 2.8 205 chr2L 16919961 intergenic not near genes chr2L 16920064 intergenic not near genes chr2L 16920166 intergenic not near genes chr2L_29_16920001 chr2L_16920001 RAL-361 629 chr2L 16958062 16958119 chr2L 16962900 16962957 Doc 13 4838 6.0 2.0 4.0 2.6 4895 chr2L 16958062 intergenic not near genes chr2L 16960510 intergenic not near genes chr2L 16962957 intergenic not near genes chr2L_13_16960001 chr2L_16960001 RAL-361 630 chr2L 16968192 16968257 chr2L 16968332 16968397 21 139 8.0 6.5 7.2 2.6 205 chr2L 16968192 intergenic not near genes chr2L 16968294 intergenic not near genes chr2L 16968397 intergenic not near genes chr2L_21_16965001 chr2L_16965001 RAL-361 631 chr2L 16970825 16970880 chr2L 16970957 16971012 13 130 9.0 8.5 8.8 1.3 187 chr2L 16970825 intergenic not near genes chr2L 16970918 intergenic not near genes chr2L 16971012 intergenic not near genes chr2L_13_16970001 chr2L_16970001 RAL-361 632 chr2L 17010923 17010965 chr2L 17011038 17011068 4 117 11.0 1.0 6.0 0.6 145 chr2L 17010923 intergenic not near genes chr2L 17010996 intergenic CG6304 - chr2L 17011068 intergenic CG6304 - chr2L_4_17010001 chr2L_17010001 RAL-361 633 chr2L 17018665 17018739 chr2L 17018791 17018865 20 126 5.5 10.5 8.0 2.2 200 chr2L 17018665 intergenic not near genes chr2L 17018765 intergenic not near genes chr2L 17018865 intergenic not near genes chr2L_20_17015001 chr2L_17015001 RAL-361 634 chr2L 17032455 17032521 chr2L 17032590 17032656 29 135 4.5 8.5 6.5 3.9 201 chr2L 17032455 intergenic not near genes chr2L 17032556 intergenic not near genes chr2L 17032656 intergenic not near genes chr2L_29_17030001 chr2L_17030001 RAL-361 635 chr2L 17070147 17070214 chr2L 17070294 17070350 20 146 6.0 2.5 4.2 3.8 203 chr2L 17070147 intergenic not near genes chr2L 17070248 intergenic not near genes chr2L 17070350 intergenic not near genes chr2L_20_17070001 chr2L_17070001 RAL-361 636 chr2L 17087334 17087402 chr2L 17087502 17087570 22 166 5.0 8.0 6.5 2.9 236 chr2L 17087334 intergenic CG12620 + chr2L 17087452 intergenic CG12620 + chr2L 17087570 intergenic CG12620 + chr2L_22_17085001 chr2L_17085001 RAL-361 637 chr2L 17101864 17101912 chr2L 17101985 17102024 17 124 9.5 6.0 7.8 1.9 160 chr2L 17101864 intergenic not near genes chr2L 17101944 intergenic not near genes chr2L 17102024 intergenic not near genes chr2L_17_17100001 chr2L_17100001 RAL-361 638 chr2L 17120805 17120858 chr2L 17120934 17120987 20 129 11.0 5.5 8.2 2.2 182 chr2L 17120805 intergenic not near genes chr2L 17120896 intergenic not near genes chr2L 17120987 intergenic not near genes chr2L_20_17120001 chr2L_17120001 RAL-361 639 chr2L 17156989 17157026 chr2L 17157152 17157189 9 160 6.5 3.0 4.8 1.6 200 chr2L 17156989 intron,intron CG34106 +,beat-IIIa + chr2L 17157089 intron,intron CG34106 +,beat-IIIa + chr2L 17157189 intron,intron CG34106 +,beat-IIIa + chr2L_9_17155001 chr2L_17155001 RAL-361 640 chr2L 17158700 17158753 chr2L 17158853 17158906 17 151 6.0 12.0 9.0 1.7 206 chr2L 17158700 5` UTR,exon CG34106 +,beat-IIIa + chr2L 17158803 intron,intron CG34106 +,beat-IIIa + chr2L 17158906 intron,intron CG34106 +,beat-IIIa + chr2L_17_17155001 chr2L_17155001 RAL-361 641 chr2L 17167520 17167594 chr2L 17167811 17167885 pogo 24 291 4.5 5.0 4.8 4.1 365 chr2L 17167520 intron,intron CG34106 +,beat-IIIa + chr2L 17167702 intron,intron CG34106 +,beat-IIIa + chr2L 17167885 intron,intron CG34106 +,beat-IIIa + chr2L_24_17165001 chr2L_17165001 RAL-361 642 chr2L 17199118 17199179 chr2L 17200635 17200696 hobo 17 1516 5.0 7.5 6.2 2.4 1578 chr2L 17199118 intron beat-IIIc - chr2L 17199907 intron beat-IIIc - chr2L 17200696 intron beat-IIIc - chr2L_17_17195001 chr2L_17195001 RAL-361 643 chr2L 17273150 17273218 chr2L 17277983 17278051 F-element 29 4830 7.0 8.0 7.5 3.4 4901 chr2L 17273150 intergenic not near genes chr2L 17275600 intergenic not near genes chr2L 17278051 intergenic not near genes chr2L_29_17275001 chr2L_17275001 RAL-361 644 chr2L 17304269 17304318 chr2L 17304406 17304455 19 137 7.0 9.5 8.2 2.1 186 chr2L 17304269 intergenic not near genes chr2L 17304362 intergenic not near genes chr2L 17304455 intergenic not near genes chr2L_19_17300001 chr2L_17300001 RAL-361 645 chr2L 17327868 17327916 chr2L 17328002 17328044 18 135 13.0 4.5 8.8 1.8 176 chr2L 17327868 intergenic not near genes chr2L 17327956 intergenic not near genes chr2L 17328044 intergenic not near genes chr2L_18_17325001 chr2L_17325001 RAL-361 646 chr2L 17329027 17329084 chr2L 17329205 17329262 23 178 10.0 7.5 8.8 2.3 235 chr2L 17329027 intergenic not near genes chr2L 17329144 intergenic not near genes chr2L 17329262 intergenic not near genes chr2L_23_17325001 chr2L_17325001 RAL-361 647 chr2L 17335505 17335564 chr2L 17336721 17336780 1360 30 1215 10.5 11.0 10.8 2.5 1275 chr2L 17335505 intergenic not near genes chr2L 17336142 intergenic not near genes chr2L 17336780 intergenic not near genes chr2L_30_17335001 chr2L_17335001 RAL-361 648 chr2L 17344833 17344900 chr2L 17344960 17345027 21 127 7.5 6.5 7.0 2.6 194 chr2L 17344833 intergenic not near genes chr2L 17344930 intergenic not near genes chr2L 17345027 intergenic not near genes chr2L_21_17340001 chr2L_17340001 RAL-361 649 chr2L 17379665 17379704 chr2L 17379800 17379839 21 135 4.5 9.0 6.8 2.7 174 chr2L 17379665 intron Lrch - chr2L 17379752 intron Lrch - chr2L 17379839 intron Lrch - chr2L_21_17375001 chr2L_17375001 RAL-361 650 chr2L 17421691 17421716 chr2L 17421895 17421907 12 203 8.5 10.5 9.5 1.1 216 chr2L 17421691 intron Dif - chr2L 17421799 intron Dif - chr2L 17421907 intron Dif - chr2L_12_17420001 chr2L_17420001 RAL-361 651 chr2L 17425719 17425796 chr2L 17425896 17425973 32 177 4.5 4.5 4.5 5.8 254 chr2L 17425719 intron Dif - chr2L 17425846 intron Dif - chr2L 17425973 intron Dif - chr2L_32_17425001 chr2L_17425001 RAL-361 652 chr2L 17432017 17432039 chr2L 17432174 17432197 1360 4 158 0.0 11.0 5.5 0.6 180 chr2L 17432017 intron Dif - chr2L 17432107 intron Dif - chr2L 17432197 intron Dif - chr2L_4_17430001 chr2L_17430001 RAL-361 653 chr2L 17571150 17571162 chr2L 17571283 17571295 5 133 0.0 21.0 10.5 0.4 145 chr2L 17571150 intergenic not near genes chr2L 17571222 intergenic not near genes chr2L 17571295 intergenic not near genes chr2L_5_17570001 chr2L_17570001 RAL-361 654 chr2L 17607440 17607444 chr2L 17607588 17607592 8 147 19.5 0.0 9.8 0.7 152 chr2L 17607440 intergenic CR44412 - chr2L 17607516 intergenic CR44412 - chr2L 17607592 intergenic CR44412 - chr2L_8_17605001 chr2L_17605001 RAL-361 655 chr2L 17607445 17607450 chr2L 17607587 17607598 4 146 19.0 0.0 9.5 0.4 153 chr2L 17607445 intergenic CR44412 - chr2L 17607522 intergenic CR44412 - chr2L 17607598 intergenic CR44412 - chr2L_4_17605001 chr2L_17605001 RAL-361 656 chr2L 17623623 17623685 chr2L 17623903 17623965 25 280 11.0 1.0 6.0 3.6 342 chr2L 17623623 intergenic not near genes chr2L 17623794 intergenic not near genes chr2L 17623965 intergenic not near genes chr2L_25_17620001 chr2L_17620001 RAL-361 657 chr2L 17669066 17669125 chr2L 17669193 17669252 27 126 10.5 7.5 9.0 2.7 186 chr2L 17669066 intron CadN - chr2L 17669159 intron CadN - chr2L 17669252 intron CadN - chr2L_27_17665001 chr2L_17665001 RAL-361 658 chr2L 17687471 17687519 chr2L 17692266 17692314 F-element 19 4795 4.5 6.0 5.2 3.1 4843 chr2L 17687471 intron CadN - chr2L 17689892 intron CadN - chr2L 17692314 intron CadN - chr2L_19_17685001 chr2L_17685001 RAL-361 659 chr2L 17706042 17706110 chr2L 17706169 17706237 26 124 9.0 12.5 10.8 2.2 195 chr2L 17706042 intron,3` UTR CadN -,CG43231 + chr2L 17706140 intron,3` UTR CadN -,CG43231 + chr2L 17706237 intron CadN - chr2L_26_17705001 chr2L_17705001 RAL-361 660 chr2L 17723743 17723791 chr2L 17723886 17723934 16 143 5.0 3.5 4.2 3.1 191 chr2L 17723743 intron CadN - chr2L 17723838 intron CadN - chr2L 17723934 intron CadN - chr2L_16_17720001 chr2L_17720001 RAL-361 661 chr2L 17727829 17727871 chr2L 17729346 17729378 hobo 19 1515 13.5 12.0 12.8 1.4 1549 chr2L 17727829 intron CadN - chr2L 17728604 intron CadN - chr2L 17729378 intron CadN - chr2L_19_17725001 chr2L_17725001 RAL-361 662 chr2L 17819875 17819944 chr2L 17825128 17825197 copia 11 5252 5.5 3.0 4.2 2.1 5322 chr2L 17819875 intron CadN2 - chr2L 17822536 intron CadN2 - chr2L 17825197 intron CadN2 - chr2L_11_17820001 chr2L_17820001 RAL-361 663 chr2L 17837107 17837182 chr2L 17837257 17837332 24 148 4.5 6.5 5.5 3.7 225 chr2L 17837107 intron CadN2 - chr2L 17837220 intron CadN2 - chr2L 17837332 intron CadN2 - chr2L_24_17835001 chr2L_17835001 RAL-361 664 chr2L 17861711 17861758 chr2L 17861843 17861890 13 132 9.0 5.5 7.2 1.6 179 chr2L 17861711 intron CadN2 - chr2L 17861800 intron CadN2 - chr2L 17861890 intron CadN2 - chr2L_13_17860001 chr2L_17860001 RAL-361 665 chr2L 17879594 17879657 chr2L 17879725 17879788 15 131 7.0 6.0 6.5 2.0 194 chr2L 17879594 intergenic not near genes chr2L 17879691 intergenic not near genes chr2L 17879788 intergenic not near genes chr2L_15_17875001 chr2L_17875001 RAL-361 666 chr2L 17891422 17891440 chr2L 17891550 17891568 6 128 11.0 4.5 7.8 0.7 146 chr2L 17891422 intergenic not near genes chr2L 17891495 intergenic not near genes chr2L 17891568 intergenic not near genes chr2L_6_17890001 chr2L_17890001 RAL-361 667 chr2L 17891441 17891486 chr2L 17891549 17891614 9 120 5.5 4.5 5.0 1.5 173 chr2L 17891441 intergenic not near genes chr2L 17891528 intergenic not near genes chr2L 17891614 intergenic not near genes chr2L_9_17890001 chr2L_17890001 RAL-361 668 chr2L 17911935 17911981 chr2L 17914163 17914209 pogo 10 2226 6.5 11.0 8.8 1.0 2274 chr2L 17911935 intergenic not near genes chr2L 17913072 intergenic not near genes chr2L 17914209 intergenic CG43271 - chr2L_10_17910001 chr2L_17910001 RAL-361 669 chr2L 17947808 17947846 chr2L 17948169 17948229 19 381 8.5 9.0 8.8 1.9 421 chr2L 17947808 intergenic CR44398 - chr2L 17948018 intergenic CR44398 - chr2L 17948229 3` UTR CR44398 - chr2L_19_17945001 chr2L_17945001 RAL-361 670 chr2L 17951915 17951970 chr2L 17953432 17953487 hobo 22 1516 8.5 13.5 11.0 1.8 1572 chr2L 17951915 intergenic CR44398 -,CR44397 - chr2L 17952701 intergenic not near genes chr2L 17953487 intergenic not near genes chr2L_22_17950001 chr2L_17950001 RAL-361 671 chr2L 18009690 18009726 chr2L 18009823 18009856 10 132 14.0 8.5 11.2 0.8 166 chr2L 18009690 3` UTR,3` UTR CG31740 +,elfless - chr2L 18009773 3` UTR elfless - chr2L 18009856 3` UTR elfless - chr2L_10_18005001 chr2L_18005001 RAL-361 672 chr2L 18009727 18009758 chr2L 18009818 18009891 16 127 8.5 8.0 8.2 1.7 164 chr2L 18009727 3` UTR elfless - chr2L 18009809 3` UTR elfless - chr2L 18009891 3` UTR elfless - chr2L_16_18005001 chr2L_18005001 RAL-361 673 chr2L 18027738 18027806 chr2L 18027875 18027943 25 136 8.5 8.0 8.2 2.7 205 chr2L 18027738 intron rdo + chr2L 18027840 intron rdo + chr2L 18027943 intron rdo + chr2L_25_18025001 chr2L_18025001 RAL-361 674 chr2L 18029383 18029441 chr2L 18029570 18029628 19 186 8.5 5.5 7.0 2.4 245 chr2L 18029383 intron rdo + chr2L 18029506 intron rdo + chr2L 18029628 intron rdo + chr2L_19_18025001 chr2L_18025001 RAL-361 675 chr2L 18043726 18043753 chr2L 18043897 18043911 18 177 10.0 12.5 11.2 1.5 185 chr2L 18043726 intron rdo + chr2L 18043818 intron rdo + chr2L 18043911 intron rdo + chr2L_18_18040001 chr2L_18040001 RAL-361 676 chr2L 18051833 18051899 chr2L 18061030 18061096 roo 22 9192 7.5 8.5 8.0 2.4 9263 chr2L 18051833 intron rdo + chr2L 18056464 intron rdo + chr2L 18061096 intron rdo + chr2L_22_18055001 chr2L_18055001 RAL-361 677 chr2L 18079767 18079838 chr2L 18079903 18079974 28 136 8.0 6.0 7.0 3.5 207 chr2L 18079767 intron Arr1 + chr2L 18079870 intron Arr1 + chr2L 18079974 exon Arr1 + chr2L_28_18075001 chr2L_18075001 RAL-361 678 chr2L 18099267 18099338 chr2L 18099472 18099543 25 205 6.5 6.0 6.2 3.5 276 chr2L 18099267 intergenic not near genes chr2L 18099405 intergenic not near genes chr2L 18099543 intergenic not near genes chr2L_25_18095001 chr2L_18095001 RAL-361 679 chr2L 18111194 18111210 chr2L 18111335 18111351 10 140 20.5 9.0 14.8 0.6 157 chr2L 18111194 intergenic not near genes chr2L 18111272 intergenic not near genes chr2L 18111351 intergenic not near genes chr2L_10_18110001 chr2L_18110001 RAL-361 680 chr2L 18167294 18167353 chr2L 18167426 18167478 23 131 12.0 10.5 11.2 1.9 184 chr2L 18167294 intron CG42750 - chr2L 18167386 intron CG42750 - chr2L 18167478 intron CG42750 - chr2L_23_18165001 chr2L_18165001 RAL-361 681 chr2L 18179531 18179606 chr2L 18179841 18179895 27 309 3.5 8.0 5.8 4.0 364 chr2L 18179531 intron CG42750 - chr2L 18179713 intron CG42750 - chr2L 18179895 intron CG42750 - chr2L_27_18175001 chr2L_18175001 RAL-361 682 chr2L 18245479 18245547 chr2L 18245683 18245751 40 203 8.0 6.5 7.2 4.9 272 chr2L 18245479 intron CG42750 - chr2L 18245615 intron CG42750 - chr2L 18245751 intron CG42750 - chr2L_40_18245001 chr2L_18245001 RAL-361 683 chr2L 18298930 18298958 chr2L 18299016 18299040 11 107 10.0 5.0 7.5 1.3 110 chr2L 18298930 intergenic not near genes chr2L 18298985 intergenic not near genes chr2L 18299040 intergenic not near genes chr2L_11_18295001 chr2L_18295001 RAL-361 684 chr2L 18329002 18329071 chr2L 18329138 18329207 36 133 6.5 10.0 8.2 3.9 205 chr2L 18329002 intron Fas3 + chr2L 18329104 intron Fas3 + chr2L 18329207 intron Fas3 + chr2L_36_18325001 chr2L_18325001 RAL-361 685 chr2L 18355453 18355469 chr2L 18355792 18355808 8 339 18.5 11.5 15.0 0.5 355 chr2L 18355453 intron Fas3 + chr2L 18355630 intron Fas3 + chr2L 18355808 intron Fas3 + chr2L_8_18355001 chr2L_18355001 RAL-361 686 chr2L 18355471 18355523 chr2L 18355788 18355862 18 336 5.5 11.0 8.2 2.0 391 chr2L 18355471 intron Fas3 + chr2L 18355666 intron Fas3 + chr2L 18355862 intron Fas3 + chr2L_18_18355001 chr2L_18355001 RAL-361 687 chr2L 18366757 18366819 chr2L 18367062 18367068 17 298 7.5 0.0 3.8 3.5 311 chr2L 18366757 intron Fas3 + chr2L 18366912 intron Fas3 + chr2L 18367068 intron Fas3 + chr2L_17_18365001 chr2L_18365001 RAL-361 688 chr2L 18373214 18373286 chr2L 18373602 18373669 31 386 8.5 7.0 7.8 3.5 455 chr2L 18373214 intron Fas3 + chr2L 18373442 intron Fas3 + chr2L 18373669 intron Fas3 + chr2L_31_18370001 chr2L_18370001 RAL-361 689 chr2L 18407978 18408060 chr2L 18412812 18412902 Doc 24 4839 8.0 0.0 4.0 4.8 4924 chr2L 18407978 intergenic not near genes chr2L 18410440 intergenic not near genes chr2L 18412902 intergenic not near genes chr2L_24_18410001 chr2L_18410001 RAL-361 690 chr2L 18429743 18429785 chr2L 18429901 18429943 18 155 16.0 8.0 12.0 1.4 200 chr2L 18429743 intergenic not near genes chr2L 18429843 intergenic not near genes chr2L 18429943 intergenic not near genes chr2L_18_18425001 chr2L_18425001 RAL-361 691 chr2L 18441112 18441169 chr2L 18441302 18441357 17 190 1.0 8.5 4.8 2.9 245 chr2L 18441112 intergenic RpS26 - chr2L 18441234 intergenic RpS26 - chr2L 18441357 3` UTR RpS26 - chr2L_17_18440001 chr2L_18440001 RAL-361 692 chr2L 18462311 18462475 chr2L 18462472 18462603 9 159 0.0 0.0 0.0 9.0 292 chr2L 18462311 intron let-7-C + chr2L 18462457 intron let-7-C + chr2L 18462603 intron let-7-C + chr2L_9_18460001 chr2L_18460001 RAL-361 693 chr2L 18538548 18538593 chr2L 18538664 18538724 25 128 1.5 11.0 6.2 3.5 176 chr2L 18538548 intron Pde11 - chr2L 18538636 intron Pde11 - chr2L 18538724 intron Pde11 - chr2L_25_18535001 chr2L_18535001 RAL-361 694 chr2L 18639127 18639196 chr2L 18639265 18639307 26 136 8.5 13.0 10.8 2.2 180 chr2L 18639127 intron MESR3 + chr2L 18639217 intron MESR3 + chr2L 18639307 intron MESR3 + chr2L_26_18635001 chr2L_18635001 RAL-361 695 chr2L 18811384 18811389 chr2L 18811516 18811521 4 132 18.0 8.5 13.2 0.3 137 chr2L 18811384 intergenic CG10570 -,CG42502 - chr2L 18811452 intergenic CG10570 -,CG42502 - chr2L 18811521 intergenic not near genes chr2L_4_18810001 chr2L_18810001 RAL-361 696 chr2L 18811393 18811433 chr2L 18811515 18811560 22 131 7.5 8.0 7.8 2.5 167 chr2L 18811393 intergenic CG10570 -,CG42502 - chr2L 18811476 intergenic CG10570 -,CG42502 - chr2L 18811560 intergenic not near genes chr2L_22_18810001 chr2L_18810001 RAL-361 697 chr2L 18812518 18812585 chr2L 18812831 18812898 28 313 0.0 11.5 5.8 4.1 380 chr2L 18812518 intergenic CG17325 +,CG42305 + chr2L 18812708 5` UTR,5` UTR CG17325 +,CG42305 + chr2L 18812898 5` UTR,5` UTR CG17325 +,CG42305 + chr2L_28_18810001 chr2L_18810001 RAL-361 698 chr2L 18846385 18846462 chr2L 18846525 18846602 21 139 4.5 9.0 6.8 2.7 217 chr2L 18846385 intron CG17321 + chr2L 18846494 intron CG17321 + chr2L 18846602 intron CG17321 + chr2L_21_18845001 chr2L_18845001 RAL-361 699 chr2L 19051586 19051601 chr2L 19051767 19051782 6 181 19.0 17.5 18.2 0.3 196 chr2L 19051586 5` UTR l(2)37Bb - chr2L 19051684 intergenic l(2)37Bb -,Rpn3 + chr2L 19051782 intergenic Rpn3 +,l(2)37Bb - chr2L_6_19050001 chr2L_19050001 RAL-361 700 chr2L 19121008 19121068 chr2L 19121122 19121197 18 127 11.5 8.0 9.8 1.7 189 chr2L 19121008 intergenic l(2)37Cc - chr2L 19121102 intergenic l(2)37Cc - chr2L 19121197 intergenic l(2)37Cc - chr2L_18_19120001 chr2L_19120001 RAL-361 701 chr2L 19121507 19121559 chr2L 19121638 19121664 12 126 12.5 10.5 11.5 1.0 157 chr2L 19121507 3` UTR l(2)37Cc - chr2L 19121586 3` UTR l(2)37Cc - chr2L 19121664 3` UTR l(2)37Cc - chr2L_12_19120001 chr2L_19120001 RAL-361 702 chr2L 19145154 19145170 chr2L 19145277 19145294 7 129 20.0 8.5 14.2 0.5 140 chr2L 19145154 intron brat + chr2L 19145224 intron brat + chr2L 19145294 intron brat + chr2L_7_19145001 chr2L_19145001 RAL-361 703 chr2L 19147259 19147390 chr2L 19154406 19154475 297 21 7132 0.0 5.5 2.8 5.5 7216 chr2L 19147259 intron brat + chr2L 19150867 intron brat + chr2L 19154475 intron brat + chr2L_21_19150001 chr2L_19150001 RAL-361 704 chr2L 19189940 19189983 chr2L 19190144 19190187 14 202 10.5 13.5 12.0 1.1 247 chr2L 19189940 intergenic pigeon +,drl + chr2L 19190064 intergenic pigeon +,drl + chr2L 19190187 intergenic drl +,pigeon + chr2L_14_19190001 chr2L_19190001 RAL-361 705 chr2L 19199630 19199642 chr2L 19199750 19199762 7 125 13.5 10.0 11.8 0.5 132 chr2L 19199630 intron drl + chr2L 19199696 intron drl + chr2L 19199762 intron drl + chr2L_7_19195001 chr2L_19195001 RAL-361 706 chr2L 19199643 19199695 chr2L 19199746 19199822 19 123 6.5 9.5 8.0 2.1 179 chr2L 19199643 intron drl + chr2L 19199732 intron drl + chr2L 19199822 intron drl + chr2L_19_19195001 chr2L_19195001 RAL-361 707 chr2L 19209574 19209646 chr2L 19209709 19209781 37 135 9.0 3.0 6.0 5.3 207 chr2L 19209574 intergenic not near genes chr2L 19209678 intergenic not near genes chr2L 19209781 intergenic not near genes chr2L_37_19205001 chr2L_19205001 RAL-361 708 chr2L 19316155 19316228 chr2L 19316282 19316343 19 125 4.5 2.0 3.2 4.5 188 chr2L 19316155 intergenic not near genes chr2L 19316249 intergenic not near genes chr2L 19316343 intergenic not near genes chr2L_19_19315001 chr2L_19315001 RAL-361 709 chr2L 19344975 19345034 chr2L 19357234 19357293 blood 25 12259 10.0 12.0 11.0 2.1 12318 chr2L 19344975 intron dnt - chr2L 19351134 intron dnt - chr2L 19357293 intron dnt - chr2L_25_19350001 chr2L_19350001 RAL-361 710 chr2L 19357499 19357565 chr2L 19357639 19357705 33 140 12.0 9.0 10.5 2.9 206 chr2L 19357499 intron dnt - chr2L 19357602 intron dnt - chr2L 19357705 intron dnt - chr2L_33_19355001 chr2L_19355001 RAL-361 711 chr2L 19359133 19359200 chr2L 19359276 19359343 28 143 11.0 9.0 10.0 2.5 210 chr2L 19359133 intron dnt - chr2L 19359238 intron dnt - chr2L 19359343 intron dnt - chr2L_28_19355001 chr2L_19355001 RAL-361 712 chr2L 19376779 19376836 chr2L 19376905 19376961 9 124 10.0 3.5 6.8 1.2 182 chr2L 19376779 intergenic not near genes chr2L 19376870 intergenic not near genes chr2L 19376961 intergenic not near genes chr2L_9_19375001 chr2L_19375001 RAL-361 713 chr2L 19382576 19382639 chr2L 19382703 19382725 11 111 16.5 14.0 15.2 0.7 149 chr2L 19382576 exon CG17350 + chr2L 19382650 exon CG17350 + chr2L 19382725 exon CG17350 + chr2L_11_19380001 chr2L_19380001 RAL-361 714 chr2L 19405310 19405351 chr2L 19405490 19405531 24 179 15.5 11.5 13.5 1.7 221 chr2L 19405310 intron Pax - chr2L 19405420 intron Pax - chr2L 19405531 intron Pax - chr2L_24_19405001 chr2L_19405001 RAL-361 715 chr2L 19405352 19405641 chr2L 19405482 19405781 35 156 6.0 7.5 6.8 4.5 429 chr2L 19405352 intron Pax - chr2L 19405566 intron Pax - chr2L 19405781 intron Pax - chr2L_35_19405001 chr2L_19405001 RAL-361 716 chr2L 19412224 19412276 chr2L 19412366 19412418 23 142 9.0 7.5 8.2 2.5 194 chr2L 19412224 intron Pax - chr2L 19412321 intron Pax - chr2L 19412418 intron Pax - chr2L_23_19410001 chr2L_19410001 RAL-361 717 chr2L 19441015 19441074 chr2L 19441142 19441201 23 126 12.5 10.0 11.2 1.9 186 chr2L 19441015 intron CG10237 - chr2L 19441108 intron CG10237 - chr2L 19441201 5` UTR CG10237 - chr2L_23_19440001 chr2L_19440001 RAL-361 718 chr2L 19487175 19487232 chr2L 19487303 19487371 18 137 10.0 12.0 11.0 1.5 196 chr2L 19487175 intergenic CG13083 + chr2L 19487273 intergenic CG13083 + chr2L 19487371 intergenic CG13083 + chr2L_18_19485001 chr2L_19485001 RAL-361 719 chr2L 19520132 19520193 chr2L 19520261 19520322 25 129 11.0 13.5 12.2 1.9 190 chr2L 19520132 intron CG10132 + chr2L 19520227 intron CG10132 + chr2L 19520322 intron CG10132 + chr2L_25_19520001 chr2L_19520001 RAL-361 720 chr2L 19550916 19550985 chr2L 19551055 19551125 24 136 5.0 7.0 6.0 3.4 209 chr2L 19550916 intron Tep4 + chr2L 19551020 intron Tep4 + chr2L 19551125 intron Tep4 + chr2L_24_19550001 chr2L_19550001 RAL-361 721 chr2L 19557779 19557801 chr2L 19557921 19557943 7 142 10.5 3.0 6.8 0.9 164 chr2L 19557779 intergenic Tep5 + chr2L 19557861 intergenic Tep5 + chr2L 19557943 intergenic Tep5 + chr2L_7_19555001 chr2L_19555001 RAL-361 722 chr2L 19557808 19557983 chr2L 19557919 19558113 14 128 2.5 3.0 2.8 3.7 305 chr2L 19557808 intergenic Tep5 + chr2L 19557960 intergenic Tep5 + chr2L 19558113 exon Tep5 + chr2L_14_19555001 chr2L_19555001 RAL-361 723 chr2L 19558481 19558483 chr2L 19558635 19558637 4 154 7.5 12.5 10.0 0.4 156 chr2L 19558481 intron Tep5 + chr2L 19558559 intron Tep5 + chr2L 19558637 intron Tep5 + chr2L_4_19555001 chr2L_19555001 RAL-361 724 chr2L 19558487 19558545 chr2L 19558626 19558699 29 153 0.5 11.0 5.8 4.3 212 chr2L 19558487 intron Tep5 + chr2L 19558593 intron Tep5 + chr2L 19558699 intron Tep5 + chr2L_29_19555001 chr2L_19555001 RAL-361 725 chr2L 19559953 19560034 chr2L 19560256 19560336 22 303 9.5 5.5 7.5 2.6 383 chr2L 19559953 exon Tep5 + chr2L 19560144 exon Tep5 + chr2L 19560336 intron Tep5 + chr2L_22_19560001 chr2L_19560001 RAL-361 726 chr2L 19560796 19560865 chr2L 19560926 19561010 21 138 6.5 0.0 3.2 5.0 214 chr2L 19560796 exon Tep5 + chr2L 19560903 exon Tep5 + chr2L 19561010 exon Tep5 + chr2L_21_19560001 chr2L_19560001 RAL-361 727 chr2L 19608556 19608610 chr2L 19608697 19608751 16 141 5.5 7.5 6.5 2.1 195 chr2L 19608556 intron Lar + chr2L 19608654 intron Lar + chr2L 19608751 intron Lar + chr2L_16_19605001 chr2L_19605001 RAL-361 728 chr2L 19620054 19620112 chr2L 19621085 19621099 jockey 19 1032 11.5 11.5 11.5 1.5 1045 chr2L 19620054 intron Lar + chr2L 19620576 intron Lar + chr2L 19621099 intron Lar + chr2L_19_19620001 chr2L_19620001 RAL-361 729 chr2L 19652523 19652603 chr2L 19674009 19674039 opus 29 21482 5.0 13.0 9.0 2.9 21516 chr2L 19652523 intron Lar + chr2L 19663281 intron Lar + chr2L 19674039 intron Lar + chr2L_29_19660001 chr2L_19660001 RAL-361 730 chr2L 19693759 19693812 chr2L 19693901 19693954 13 136 10.0 1.0 5.5 2.0 195 chr2L 19693759 intron Lar + chr2L 19693856 intron Lar + chr2L 19693954 intron Lar + chr2L_13_19690001 chr2L_19690001 RAL-361 731 chr2L 19693816 19694018 chr2L 19693900 19694197 13 132 0.0 1.0 0.5 8.7 381 chr2L 19693816 intron Lar + chr2L 19694006 intron Lar + chr2L 19694197 intron Lar + chr2L_13_19690001 chr2L_19690001 RAL-361 732 chr2L 19694024 19694083 chr2L 19694203 19694262 22 179 0.0 5.0 2.5 6.3 238 chr2L 19694024 intron Lar + chr2L 19694143 intron Lar + chr2L 19694262 intron Lar + chr2L_22_19690001 chr2L_19690001 RAL-361 733 chr2L 19697982 19698057 chr2L 19698108 19698183 41 125 10.0 7.5 8.8 4.2 201 chr2L 19697982 intron Lar + chr2L 19698082 intron Lar + chr2L 19698183 intron Lar + chr2L_41_19695001 chr2L_19695001 RAL-361 734 chr2L 19703501 19703560 chr2L 19712687 19712746 roo 19 9185 14.5 11.5 13.0 1.4 9245 chr2L 19703501 intron Lar + chr2L 19708124 intron Lar + chr2L 19712746 intron Lar + chr2L_19_19705001 chr2L_19705001 RAL-361 735 chr2L 19737358 19737385 chr2L 19740823 19740850 1360 14 3465 15.5 8.0 11.8 1.1 3492 chr2L 19737358 intergenic Nf-YB + chr2L 19739104 intergenic not near genes chr2L 19740850 intergenic not near genes chr2L_14_19735001 chr2L_19735001 RAL-361 736 chr2L 19762762 19762831 chr2L 19763054 19763123 pogo 18 291 7.5 8.0 7.8 2.0 361 chr2L 19762762 exon fbp - chr2L 19762942 intron fbp - chr2L 19763123 intron fbp - chr2L_18_19760001 chr2L_19760001 RAL-361 737 chr2L 19776630 19776660 chr2L 19776745 19776790 15 127 16.5 12.0 14.2 1.0 160 chr2L 19776630 3` UTR CdGAPr - chr2L 19776710 3` UTR CdGAPr - chr2L 19776790 3` UTR CdGAPr - chr2L_15_19775001 chr2L_19775001 RAL-361 738 chr2L 19821745 19821816 chr2L 19821871 19821943 29 125 5.5 5.5 5.5 4.5 198 chr2L 19821745 intron sick + chr2L 19821844 intron sick + chr2L 19821943 intron sick + chr2L_29_19820001 chr2L_19820001 RAL-361 739 chr2L 19823217 19823289 chr2L 19823348 19823428 27 138 9.5 0.5 5.0 4.5 211 chr2L 19823217 intron sick + chr2L 19823322 intron sick + chr2L 19823428 intron sick + chr2L_27_19820001 chr2L_19820001 RAL-361 740 chr2L 19824362 19824426 chr2L 19824495 19824559 27 132 7.5 6.0 6.8 3.5 197 chr2L 19824362 intron sick + chr2L 19824460 intron sick + chr2L 19824559 intron sick + chr2L_27_19820001 chr2L_19820001 RAL-361 741 chr2L 19833112 19833124 chr2L 19833239 19833251 5 127 7.5 0.5 4.0 1.0 139 chr2L 19833112 intron sick + chr2L 19833182 intron sick + chr2L 19833251 intron sick + chr2L_5_19830001 chr2L_19830001 RAL-361 742 chr2L 19927210 19927233 chr2L 19927333 19927341 9 125 8.5 18.5 13.5 0.6 131 chr2L 19927210 intron sick + chr2L 19927276 intron sick + chr2L 19927341 intron sick + chr2L_9_19925001 chr2L_19925001 RAL-361 743 chr2L 19964794 19964862 chr2L 19964929 19964991 25 131 8.5 10.0 9.2 2.5 197 chr2L 19964794 intron CG10680 + chr2L 19964892 exon CG10680 + chr2L 19964991 exon CG10680 + chr2L_25_19960001 chr2L_19960001 RAL-361 744 chr2L 19994624 19994629 chr2L 19994733 19994759 5 120 19.0 8.5 13.8 0.3 135 chr2L 19994624 intron CG43861 - chr2L 19994692 intron CG43861 - chr2L 19994759 intron CG43861 - chr2L_5_19990001 chr2L_19990001 RAL-361 745 chr2L 19994645 19994670 chr2L 19994732 19994800 14 118 10.5 8.0 9.2 1.4 155 chr2L 19994645 intron CG43861 - chr2L 19994722 intron CG43861 - chr2L 19994800 intron CG43861 - chr2L_14_19990001 chr2L_19990001 RAL-361 746 chr2L 20005837 20005889 chr2L 20010963 20011015 flea 16 5126 8.5 8.5 8.5 1.7 5178 chr2L 20005837 intron CG43861 - chr2L 20008426 intron CG43861 - chr2L 20011015 intron CG43861 - chr2L_16_20005001 chr2L_20005001 RAL-361 747 chr2L 20045163 20045165 chr2L 20045294 20045296 4 131 14.0 8.0 11.0 0.3 133 chr2L 20045163 intron sNPF + chr2L 20045230 intron sNPF + chr2L 20045296 intron sNPF + chr2L_4_20045001 chr2L_20045001 RAL-361 748 chr2L 20064184 20064243 chr2L 20064320 20064380 17 136 9.0 6.5 7.8 1.9 196 chr2L 20064184 3` UTR lok + chr2L 20064282 3` UTR,3` UTR lok +,vls - chr2L 20064380 3` UTR,3` UTR lok +,vls - chr2L_17_20060001 chr2L_20060001 RAL-361 749 chr2L 20069488 20069498 chr2L 20069617 20069628 11 130 19.5 7.5 13.5 0.8 140 chr2L 20069488 exon bwa + chr2L 20069558 intron bwa + chr2L 20069628 intron bwa + chr2L_11_20065001 chr2L_20065001 RAL-361 750 chr2L 20069500 20069551 chr2L 20069605 20069665 17 121 8.0 7.5 7.8 1.9 165 chr2L 20069500 exon bwa + chr2L 20069582 intron bwa + chr2L 20069665 intron bwa + chr2L_17_20065001 chr2L_20065001 RAL-361 751 chr2L 20079479 20079516 chr2L 20079650 20079687 19 170 9.0 7.0 8.0 2.1 208 chr2L 20079479 intron,intron neb +,fok - chr2L 20079583 intron,intron neb +,fok - chr2L 20079687 intron,intron neb +,fok - chr2L_19_20075001 chr2L_20075001 RAL-361 752 chr2L 20124286 20124360 chr2L 20124414 20124488 21 128 10.0 9.0 9.5 2.0 202 chr2L 20124286 intergenic not near genes chr2L 20124387 intergenic not near genes chr2L 20124488 intergenic not near genes chr2L_21_20120001 chr2L_20120001 RAL-361 753 chr2L 20127940 20127999 chr2L 20128074 20128133 23 134 9.0 8.5 8.8 2.3 193 chr2L 20127940 intergenic not near genes chr2L 20128036 intergenic not near genes chr2L 20128133 intergenic not near genes chr2L_23_20125001 chr2L_20125001 RAL-361 754 chr2L 20272079 20272137 chr2L 20282837 20282898 copia 25 10759 8.0 12.5 10.2 2.2 10819 chr2L 20272079 intergenic not near genes chr2L 20277488 intergenic not near genes chr2L 20282898 intergenic not near genes chr2L_25_20275001 chr2L_20275001 RAL-361 755 chr2L 20302149 20302197 chr2L 20302278 20302319 35 128 16.5 7.5 12.0 2.7 170 chr2L 20302149 intergenic not near genes chr2L 20302234 intergenic not near genes chr2L 20302319 intergenic not near genes chr2L_35_20300001 chr2L_20300001 RAL-361 756 chr2L 20303160 20303182 chr2L 20310678 20310700 blood 8 7518 1.5 18.0 9.8 0.7 7540 chr2L 20303160 intergenic not near genes chr2L 20306930 intergenic not near genes chr2L 20310700 intergenic not near genes chr2L_8_20305001 chr2L_20305001 RAL-361 757 chr2L 20310829 20310893 chr2L 20310959 20311023 20 130 8.0 8.0 8.0 2.2 194 chr2L 20310829 intergenic spir + chr2L 20310926 intergenic spir + chr2L 20311023 intergenic spir + chr2L_20_20310001 chr2L_20310001 RAL-361 758 chr2L 20312529 20312561 chr2L 20312664 20312696 14 135 7.0 15.0 11.0 1.2 167 chr2L 20312529 intron spir + chr2L 20312612 intron spir + chr2L 20312696 intron spir + chr2L_14_20310001 chr2L_20310001 RAL-361 759 chr2L 20321502 20321536 chr2L 20321609 20321647 16 113 9.0 6.0 7.5 1.9 145 chr2L 20321502 intron spir + chr2L 20321574 intron spir + chr2L 20321647 intron spir + chr2L_16_20320001 chr2L_20320001 RAL-361 760 chr2L 20352704 20352764 chr2L 20352832 20352892 25 120 14.0 9.5 11.8 2.0 188 chr2L 20352704 intron RtGEF + chr2L 20352798 intron RtGEF + chr2L 20352892 intron RtGEF + chr2L_25_20350001 chr2L_20350001 RAL-361 761 chr2L 20372201 20372246 chr2L 20372492 20372537 pogo 20 291 3.0 9.5 6.2 2.8 336 chr2L 20372201 intergenic Ugt37a1 - chr2L 20372369 intergenic Ugt37a1 - chr2L 20372537 exon Ugt37a1 - chr2L_20_20370001 chr2L_20370001 RAL-361 762 chr2L 20383418 20383466 chr2L 20383560 20383603 21 141 8.0 15.5 11.8 1.6 185 chr2L 20383418 intergenic not near genes chr2L 20383510 intergenic not near genes chr2L 20383603 intergenic not near genes chr2L_21_20380001 chr2L_20380001 RAL-361 763 chr2L 20396758 20396773 chr2L 20396884 20396898 11 125 14.5 8.5 11.5 0.9 140 chr2L 20396758 intron CG10947 - chr2L 20396828 intron CG10947 - chr2L 20396898 intron CG10947 - chr2L_11_20395001 chr2L_20395001 RAL-361 764 chr2L 20396774 20396827 chr2L 20396881 20396953 22 123 6.5 8.0 7.2 2.7 179 chr2L 20396774 intron CG10947 - chr2L 20396864 intron CG10947 - chr2L 20396953 intron CG10947 - chr2L_22_20395001 chr2L_20395001 RAL-361 765 chr2L 20498074 20498141 chr2L 20498339 20498406 25 264 7.5 6.5 7.0 3.1 332 chr2L 20498074 intergenic not near genes chr2L 20498240 intergenic not near genes chr2L 20498406 intergenic not near genes chr2L_25_20495001 chr2L_20495001 RAL-361 766 chr2L 20498638 20498702 chr2L 20498787 20498851 20 149 9.5 10.0 9.8 1.9 213 chr2L 20498638 intergenic not near genes chr2L 20498744 intergenic not near genes chr2L 20498851 intergenic not near genes chr2L_20_20495001 chr2L_20495001 RAL-361 767 chr2L 20524137 20524163 chr2L 20524269 20524295 4 132 21.5 0.0 10.8 0.3 158 chr2L 20524137 intergenic not near genes chr2L 20524216 intergenic not near genes chr2L 20524295 intergenic not near genes chr2L_4_20520001 chr2L_20520001 RAL-361 768 chr2L 20553149 20553203 chr2L 20553275 20553328 16 125 9.0 7.0 8.0 1.8 179 chr2L 20553149 intergenic not near genes chr2L 20553238 intergenic not near genes chr2L 20553328 intergenic not near genes chr2L_16_20550001 chr2L_20550001 RAL-361 769 chr2L 20568615 20568682 chr2L 20569055 20569120 X-element 26 439 9.0 8.0 8.5 2.7 505 chr2L 20568615 intron CR45347 + chr2L 20568868 intron CR45347 + chr2L 20569120 intron CR45347 + chr2L_26_20565001 chr2L_20565001 RAL-361 770 chr2L 20576181 20576238 chr2L 20583699 20583756 blood 29 7518 8.5 10.5 9.5 2.8 7575 chr2L 20576181 intergenic CR45347 + chr2L 20579968 intergenic not near genes chr2L 20583756 3` UTR CR44909 - chr2L_29_20575001 chr2L_20575001 RAL-361 771 chr2L 20630662 20630695 chr2L 20630990 20631023 18 328 15.5 6.5 11.0 1.5 361 chr2L 20630662 intergenic not near genes chr2L 20630842 intergenic not near genes chr2L 20631023 intergenic not near genes chr2L_18_20630001 chr2L_20630001 RAL-361 772 chr2L 20630696 20630742 chr2L 20630989 20631067 11 324 8.5 6.5 7.5 1.3 371 chr2L 20630696 intergenic not near genes chr2L 20630882 intergenic not near genes chr2L 20631067 intergenic not near genes chr2L_11_20630001 chr2L_20630001 RAL-361 773 chr2L 20817795 20817864 chr2L 20817924 20817993 36 127 10.5 10.5 10.5 3.1 198 chr2L 20817795 intergenic CheB38a - chr2L 20817894 exon CheB38a - chr2L 20817993 intron CheB38a - chr2L_36_20815001 chr2L_20815001 RAL-361 774 chr2L 20835774 20835833 chr2L 20836536 20836600 Quasimodo 38 765 12.5 11.0 11.8 3.0 826 chr2L 20835774 5` UTR Oseg5 - chr2L 20836187 intergenic Oseg5 -,Spn38F - chr2L 20836600 intergenic Spn38F - chr2L_38_20835001 chr2L_20835001 RAL-361 775 chr2L 20862581 20862587 chr2L 20862728 20862734 5 147 0.0 20.5 10.2 0.4 153 chr2L 20862581 intergenic not near genes chr2L 20862658 intergenic not near genes chr2L 20862734 intergenic not near genes chr2L_5_20860001 chr2L_20860001 RAL-361 776 chr2L 20891484 20891534 chr2L 20896635 20896685 jockey 17 5150 10.5 6.0 8.2 1.8 5201 chr2L 20891484 intron,intron CG43739 -,sky - chr2L 20894084 intron,intron CG43739 -,sky - chr2L 20896685 intron,intron CG43739 -,sky - chr2L_17_20890001 chr2L_20890001 RAL-361 777 chr2L 20901471 20901491 chr2L 20902663 20902707 1360 8 1213 0.5 0.0 0.2 6.7 1236 chr2L 20901471 intron,intron CG43739 -,sky - chr2L 20902089 intron,intron CG43739 -,sky - chr2L 20902707 intron,intron CG43739 -,sky - chr2L_8_20900001 chr2L_20900001 RAL-361 778 chr2L 20946894 20946949 chr2L 20947031 20947086 35 137 13.0 11.5 12.2 2.7 192 chr2L 20946894 intergenic CR44606 - chr2L 20946990 intergenic CR44606 - chr2L 20947086 intergenic CR44606 - chr2L_35_20945001 chr2L_20945001 RAL-361 779 chr2L 20976609 20976660 chr2L 20981474 20981509 X-element 25 4864 10.0 9.5 9.8 2.3 4900 chr2L 20976609 intron CG42238 - chr2L 20979059 intron CG42238 - chr2L 20981509 intron CG42238 - chr2L_25_20975001 chr2L_20975001 RAL-361 780 chr2L 21020235 21020261 chr2L 21023962 21023988 NOF 8 3725 17.0 10.5 13.8 0.5 3753 chr2L 21020235 intron CG42238 - chr2L 21022112 intron CG42238 - chr2L 21023988 intron CG42238 - chr2L_8_21020001 chr2L_21020001 RAL-361 781 chr2L 21020267 21020308 chr2L 21023958 21023974 NOF 15 3716 8.0 9.0 8.5 1.6 3707 chr2L 21020267 intron CG42238 - chr2L 21022120 intron CG42238 - chr2L 21023974 intron CG42238 - chr2L_15_21020001 chr2L_21020001 RAL-361 782 chr2L 21041096 21041161 chr2L 21049407 21049469 Tirant 29 8309 7.0 11.0 9.0 2.9 8373 chr2L 21041096 intron CG42238 - chr2L 21045282 intron CG42238 - chr2L 21049469 intron CG42238 - chr2L_29_21045001 chr2L_21045001 RAL-361 783 chr2L 21109428 21109501 chr2L 21109566 21109639 28 138 3.5 6.5 5.0 4.7 211 chr2L 21109428 intron Nhe2 + chr2L 21109534 intron Nhe2 + chr2L 21109639 intron Nhe2 + chr2L_28_21105001 chr2L_21105001 RAL-361 784 chr2L 21286559 21286621 chr2L 21286687 21286750 18 128 15.5 11.0 13.2 1.3 191 chr2L 21286559 exon Mio - chr2L 21286654 intron Mio - chr2L 21286750 intron Mio - chr2L_18_21285001 chr2L_21285001 RAL-361 785 chr2L 21337810 21337815 chr2L 21338325 21338330 BS 5 515 20.0 11.0 15.5 0.3 520 chr2L 21337810 intron dimm + chr2L 21338070 intron dimm + chr2L 21338330 intron dimm + chr2L_5_21335001 chr2L_21335001 RAL-361 786 chr2L 21347516 21347572 chr2L 21355038 21355094 blood 30 7522 14.5 10.5 12.5 2.2 7578 chr2L 21347516 intron Tsp39D + chr2L 21351305 intron Tsp39D + chr2L 21355094 intron Tsp39D + chr2L_30_21350001 chr2L_21350001 RAL-361 787 chr2L 21355561 21355632 chr2L 21355756 21355827 25 194 9.0 6.0 7.5 2.9 266 chr2L 21355561 exon Tsp39D + chr2L 21355694 intron Tsp39D + chr2L 21355827 intron Tsp39D + chr2L_25_21355001 chr2L_21355001 RAL-361 788 chr2L 21691792 21691855 chr2L 21698312 21698321 Burdock 6 6511 8.5 2.0 5.2 1.0 6529 chr2L 21691792 intron CG31619 + chr2L 21695056 intron CG31619 + chr2L 21698321 intron CG31619 + chr2L_6_21695001 chr2L_21695001 RAL-361 789 chr2L 21711943 21712020 chr2L 21712072 21712149 34 125 6.5 6.5 6.5 4.5 206 chr2L 21711943 intron CG31619 + chr2L 21712046 intron CG31619 + chr2L 21712149 intron CG31619 + chr2L_34_21710001 chr2L_21710001 RAL-361 790 chr2L 21771189 21771249 chr2L 21771346 21771406 26 157 9.5 9.5 9.5 2.5 217 chr2L 21771189 intron CG31612 - chr2L 21771298 intron CG31612 - chr2L 21771406 intron CG31612 - chr2L_26_21770001 chr2L_21770001 RAL-361 791 chr2L 21806186 21806250 chr2L 21806339 21806403 28 152 10.5 10.0 10.2 2.5 217 chr2L 21806186 intergenic not near genes chr2L 21806294 intergenic not near genes chr2L 21806403 intergenic not near genes chr2L_28_21805001 chr2L_21805001 RAL-361 792 chr2L 21808989 21809018 chr2L 21809229 21809274 13 255 10.0 11.5 10.8 1.1 285 chr2L 21808989 intergenic not near genes chr2L 21809132 intergenic not near genes chr2L 21809274 intergenic not near genes chr2L_13_21805001 chr2L_21805001 RAL-361 793 chr2L 21809019 21809031 chr2L 21809227 21809287 5 246 9.0 11.5 10.2 0.4 268 chr2L 21809019 intergenic not near genes chr2L 21809153 intergenic not near genes chr2L 21809287 intergenic not near genes chr2L_5_21805001 chr2L_21805001 RAL-361 794 chr2L 21855435 21855503 chr2L 21855571 21855640 30 133 5.5 7.0 6.2 4.2 205 chr2L 21855435 intron CR44917 + chr2L 21855538 intron CR44917 + chr2L 21855640 intron CR44917 + chr2L_30_21855001 chr2L_21855001 RAL-361 795 chr2L 21859278 21859348 chr2L 21859408 21859425 27 126 10.5 10.5 10.5 2.3 147 chr2L 21859278 intron CR44917 + chr2L 21859352 intron CR44917 + chr2L 21859425 intron CR44917 + chr2L_27_21855001 chr2L_21855001 RAL-361 796 chr2L 21882516 21882588 chr2L 21882664 21882735 25 147 6.0 7.0 6.5 3.3 219 chr2L 21882516 intergenic not near genes chr2L 21882626 intergenic not near genes chr2L 21882735 intergenic not near genes chr2L_25_21880001 chr2L_21880001 RAL-361 797 chr2L 21981642 21981707 chr2L 21990857 21990921 roo 23 9213 6.5 12.0 9.2 2.3 9279 chr2L 21981642 exon CG2528 - chr2L 21986282 intron CG2528 - chr2L 21990921 exon CG2528 - chr2L_23_21985001 chr2L_21985001 RAL-361 798 chr2L 22047207 22047237 chr2L 22047382 22047399 9 173 12.0 11.0 11.5 0.7 192 chr2L 22047207 intergenic not near genes chr2L 22047303 intergenic not near genes chr2L 22047399 intergenic not near genes chr2L_9_22045001 chr2L_22045001 RAL-361 799 chr2L 22047239 22047257 chr2L 22047379 22047432 15 171 7.5 10.5 9.0 1.5 193 chr2L 22047239 intergenic not near genes chr2L 22047336 intergenic not near genes chr2L 22047432 intergenic not near genes chr2L_15_22045001 chr2L_22045001 RAL-361 800 chr2L 22049740 22049773 chr2L 22049915 22049948 11 175 14.0 10.0 12.0 0.8 208 chr2L 22049740 intergenic not near genes chr2L 22049844 intergenic not near genes chr2L 22049948 intergenic not near genes chr2L_11_22045001 chr2L_22045001 RAL-361 801 chr2L 22073016 22073021 chr2L 22073150 22073156 INE-1 4 135 16.5 3.5 10.0 0.4 140 chr2L 22073016 intergenic CG31702 + chr2L 22073086 intergenic CG31702 + chr2L 22073156 intergenic CG31702 + chr2L_4_22070001 chr2L_22070001 RAL-361 802 chr2L 22082201 22082212 chr2L 22082342 22082353 INE-1 7 141 11.0 13.5 12.2 0.5 152 chr2L 22082201 intergenic not near genes chr2L 22082277 intergenic not near genes chr2L 22082353 intergenic not near genes chr2L_7_22080001 chr2L_22080001 RAL-361 803 chr2L 22191974 22192054 chr2L 22192113 22192167 17 133 7.5 8.5 8.0 1.9 193 chr2L 22191974 intron Ir40a - chr2L 22192070 intron Ir40a - chr2L 22192167 intron Ir40a - chr2L_17_22190001 chr2L_22190001 RAL-361 804 chr2L 22212087 22212163 chr2L 22212684 22212760 26 597 5.5 8.5 7.0 3.2 673 chr2L 22212087 intron Ir40a - chr2L 22212424 intron Ir40a - chr2L 22212760 exon Ir40a - chr2L_26_22210001 chr2L_22210001 RAL-361 805 chr2L 22215869 22215928 chr2L 22216000 22216064 19 136 8.5 9.5 9.0 1.9 195 chr2L 22215869 intergenic not near genes chr2L 22215966 intergenic not near genes chr2L 22216064 intergenic not near genes chr2L_19_22215001 chr2L_22215001 RAL-361 806 chr2L 22239383 22239457 chr2L 22239514 22239564 20 127 10.0 10.5 10.2 1.8 181 chr2L 22239383 intron CR43765 - chr2L 22239474 3` UTR CR43765 - chr2L 22239564 3` UTR CR43765 - chr2L_20_22235001 chr2L_22235001 RAL-361 807 chr2L 22258574 22258640 chr2L 22260748 22260814 G6 29 2174 12.5 8.5 10.5 2.5 2240 chr2L 22258574 intergenic Tif-IA + chr2L 22259694 intergenic not near genes chr2L 22260814 intergenic not near genes chr2L_29_22255001 chr2L_22255001 RAL-361 808 chr2L 22294312 22294378 chr2L 22294450 22294516 13 138 3.5 4.5 4.0 2.6 204 chr2L 22294312 intergenic not near genes chr2L 22294414 intergenic not near genes chr2L 22294516 intergenic not near genes chr2L_13_22290001 chr2L_22290001 RAL-361 809 chr2L 22296866 22296919 chr2L 22297043 22297096 13 177 7.5 6.5 7.0 1.6 230 chr2L 22296866 intergenic not near genes chr2L 22296981 intergenic not near genes chr2L 22297096 intergenic not near genes chr2L_13_22295001 chr2L_22295001 RAL-361 810 chr2L 22506887 22506930 chr2L 22507033 22507075 23 146 9.0 11.5 10.2 2.1 188 chr2L 22506887 intergenic not near genes chr2L 22506981 intergenic not near genes chr2L 22507075 intergenic not near genes chr2L_23_22505001 chr2L_22505001 RAL-361 811 chr2L 22548884 22548928 chr2L 22550132 22550203 1360 12 1252 1.0 10.0 5.5 1.8 1319 chr2L 22548884 intergenic CG17490 + chr2L 22549544 intergenic not near genes chr2L 22550203 intergenic CG17493 + chr2L_12_22545001 chr2L_22545001 RAL-361 812 chr2L 22581928 22581996 chr2L 22583767 22583830 S-element 27 1838 11.5 12.0 11.8 2.1 1902 chr2L 22581928 intron CG17494 + chr2L 22582879 intron CG17494 + chr2L 22583830 intron CG17494 + chr2L_27_22580001 chr2L_22580001 RAL-361 813 chr2L 22676080 22676152 chr2L 22676368 22676440 33 288 7.5 7.0 7.2 4.0 360 chr2L 22676080 exon CG40006 - chr2L 22676260 intron CG40006 - chr2L 22676440 intron CG40006 - chr2L_33_22675001 chr2L_22675001 RAL-361 814 chr2L 22679805 22679815 chr2L 22684620 22684637 F-element 6 4821 9.0 12.0 10.5 0.5 4832 chr2L 22679805 intron CG40006 - chr2L 22682221 intron CG40006 - chr2L 22684637 intron CG40006 - chr2L_6_22680001 chr2L_22680001 RAL-361 815 chr2L 22725005 22725034 chr2L 22725122 22725163 9 127 10.5 8.5 9.5 0.9 158 chr2L 22725005 intron CG40006 - chr2L 22725084 intron CG40006 - chr2L 22725163 intron CG40006 - chr2L_9_22725001 chr2L_22725001 RAL-361 816 chr2L 23234013 23234026 chr2L 23239526 23239539 Rt1c 8 5513 10.0 21.0 15.5 0.5 5526 chr2L 23234013 intergenic not near genes chr2L 23236776 intergenic not near genes chr2L 23239539 intergenic not near genes chr2L_8_23235001 chr2L_23235001 RAL-361 817 chr2R 469916 469972 chr2R 473207 473263 F-element 16 3287 6.5 7.0 6.8 2.1 3347 chr2R 469916 intergenic not near genes chr2R 471590 intergenic not near genes chr2R 473263 intergenic not near genes chr2R_16_470001 chr2R_470001 RAL-361 818 chr2R 529321 529345 chr2R 537996 538020 Max-element 4 8675 5.5 7.0 6.2 0.6 8699 chr2R 529321 intron CG40378 + chr2R 533670 intron CG40378 + chr2R 538020 intron CG40378 + chr2R_4_530001 chr2R_530001 RAL-361 819 chr2R 650966 651037 chr2R 657872 657930 gypsy7 12 6894 36.0 35.5 35.8 0.3 6964 chr2R 650966 intergenic not near genes chr2R 654448 intergenic not near genes chr2R 657930 intergenic not near genes chr2R_12_650001 chr2R_650001 RAL-361 820 chr2R 1338330 1338340 chr2R 1338461 1338471 4 131 29.0 31.0 30.0 0.1 141 chr2R 1338330 intergenic not near genes chr2R 1338400 intergenic not near genes chr2R 1338471 intergenic not near genes chr2R_4_1335001 chr2R_1335001 RAL-361 821 chr2R 1516564 1516603 chr2R 1521342 1521381 1731 39 4778 51.0 42.0 46.5 0.8 4817 chr2R 1516564 exon Maf1 - chr2R 1518972 intron Maf1 - chr2R 1521381 5` UTR Maf1 - chr2R_39_1515001 chr2R_1515001 RAL-361 822 chr2R 1684782 1684851 chr2R 1684937 1685000 16 154 5.5 5.0 5.2 2.6 218 chr2R 1684782 intron CG41520 + chr2R 1684891 intron CG41520 + chr2R 1685000 intron CG41520 + chr2R_16_1680001 chr2R_1680001 RAL-361 823 chr2R 1919580 1919638 chr2R 1920008 1920064 15 428 29.5 34.0 31.8 0.5 484 chr2R 1919580 intron CG17684 - chr2R 1919822 intron CG17684 - chr2R 1920064 intron CG17684 - chr2R_15_1915001 chr2R_1915001 RAL-361 824 chr2R 2498943 2498973 chr2R 2508140 2508170 roo 17 9196 16.5 7.5 12.0 1.3 9227 chr2R 2498943 intron MFS17 - chr2R 2503556 intron MFS17 - chr2R 2508170 intron MFS17 - chr2R_17_2500001 chr2R_2500001 RAL-361 825 chr2R 2498974 2499007 chr2R 2508131 2508204 roo 13 9194 10.0 6.5 8.2 1.4 9230 chr2R 2498974 intron MFS17 - chr2R 2503589 intron MFS17 - chr2R 2508204 intron MFS17 - chr2R_13_2500001 chr2R_2500001 RAL-361 826 chr2R 2591485 2591509 chr2R 2594211 2594235 roo 13 2726 44.0 27.5 35.8 0.4 2750 chr2R 2591485 intergenic not near genes chr2R 2592860 intergenic not near genes chr2R 2594235 intergenic not near genes chr2R_13_2590001 chr2R_2590001 RAL-361 827 chr2R 3144043 3144110 chr2R 3393371 3393438 Doc 9 249325 25.5 25.0 25.2 0.3 249395 chr2R 3144043 intron CG42596 + chr2R 3268740 intergenic not near genes chr2R 3393438 intergenic not near genes chr2R_9_3265001 chr2R_3265001 RAL-361 828 chr2R 3291952 3292103 chr2R 3915171 3915314 5 623214 14.5 33.0 23.8 0.2 623362 chr2R 3291952 intergenic not near genes chr2R 3603633 intergenic not near genes chr2R 3915314 intron uex - chr2R_5_3600001 chr2R_3600001 RAL-361 829 chr2R 3532578 3532633 chr2R 3536071 3536126 Doc 15 3493 7.5 5.5 6.5 2.0 3548 chr2R 3532578 intergenic not near genes chr2R 3534352 intergenic not near genes chr2R 3536126 intergenic not near genes chr2R_15_3530001 chr2R_3530001 RAL-361 830 chr2R 4239129 4239194 chr2R 4239297 4239362 24 168 6.5 9.5 8.0 2.7 233 chr2R 4239129 exon IntS3 - chr2R 4239246 intron IntS3 - chr2R 4239362 intron IntS3 - chr2R_24_4235001 chr2R_4235001 RAL-361 831 chr2R 4580163 4580220 chr2R 4580822 4580897 23 675 9.5 10.0 9.8 2.1 734 chr2R 4580163 intergenic not near genes chr2R 4580530 intergenic not near genes chr2R 4580897 intergenic not near genes chr2R_23_4580001 chr2R_4580001 RAL-361 832 chr2R 4604511 4604573 chr2R 4604640 4604688 22 121 7.0 8.0 7.5 2.6 177 chr2R 4604511 intron p120ctn + chr2R 4604600 intron p120ctn + chr2R 4604688 intron p120ctn + chr2R_22_4600001 chr2R_4600001 RAL-361 833 chr2R 4627990 4628064 chr2R 4628121 4628195 29 128 8.0 7.5 7.8 3.3 205 chr2R 4627990 intergenic not near genes chr2R 4628092 intergenic not near genes chr2R 4628195 intergenic not near genes chr2R_29_4625001 chr2R_4625001 RAL-361 834 chr2R 4656733 4656757 chr2R 4656993 4657017 5 258 48.0 25.5 36.8 0.1 284 chr2R 4656733 intergenic not near genes chr2R 4656875 intergenic not near genes chr2R 4657017 intergenic not near genes chr2R_5_4655001 chr2R_4655001 RAL-361 835 chr2R 4656758 4656809 chr2R 4656992 4657023 19 249 38.0 25.0 31.5 0.6 265 chr2R 4656758 intergenic not near genes chr2R 4656890 intergenic not near genes chr2R 4657023 intergenic not near genes chr2R_19_4655001 chr2R_4655001 RAL-361 836 chr2R 4900622 4900628 chr2R 4900777 4900783 5 155 17.0 9.5 13.2 0.4 161 chr2R 4900622 intron CG44102 - chr2R 4900702 intron CG44102 - chr2R 4900783 intron CG44102 - chr2R_5_4900001 chr2R_4900001 RAL-361 837 chr2R 4900629 4900680 chr2R 4900776 4900836 18 154 6.0 9.5 7.8 2.0 207 chr2R 4900629 intron CG44102 - chr2R 4900732 intron CG44102 - chr2R 4900836 intron CG44102 - chr2R_18_4900001 chr2R_4900001 RAL-361 838 chr2R 5019234 5019243 chr2R 5019370 5019379 8 136 18.5 4.5 11.5 0.6 145 chr2R 5019234 intron Ir41a + chr2R 5019306 intron Ir41a + chr2R 5019379 intron Ir41a + chr2R_8_5015001 chr2R_5015001 RAL-361 839 chr2R 5019249 5019305 chr2R 5019369 5019434 26 133 6.5 4.5 5.5 4.0 185 chr2R 5019249 intron Ir41a + chr2R 5019342 intron Ir41a + chr2R 5019434 intron Ir41a + chr2R_26_5015001 chr2R_5015001 RAL-361 840 chr2R 5038484 5038490 chr2R 5039331 5039335 4 846 19.5 0.5 10.0 0.4 851 chr2R 5038484 intergenic not near genes chr2R 5038910 intergenic not near genes chr2R 5039335 intergenic not near genes chr2R_4_5035001 chr2R_5035001 RAL-361 841 chr2R 5040747 5040752 chr2R 5041290 5041295 4 543 0.0 12.0 6.0 0.6 548 chr2R 5040747 intergenic not near genes chr2R 5041021 intergenic not near genes chr2R 5041295 intergenic not near genes chr2R_4_5040001 chr2R_5040001 RAL-361 842 chr2R 5075181 5075192 chr2R 5075359 5075370 8 178 20.0 0.0 10.0 0.7 189 chr2R 5075181 intergenic not near genes chr2R 5075276 intergenic not near genes chr2R 5075370 intergenic not near genes chr2R_8_5075001 chr2R_5075001 RAL-361 843 chr2R 5075217 5075367 chr2R 5075758 5075833 27 512 0.0 4.5 2.2 8.4 616 chr2R 5075217 intergenic not near genes chr2R 5075525 intergenic not near genes chr2R 5075833 intergenic not near genes chr2R_27_5075001 chr2R_5075001 RAL-361 844 chr2R 5080755 5080793 chr2R 5080891 5080934 8 137 9.0 11.5 10.2 0.7 179 chr2R 5080755 intergenic not near genes chr2R 5080844 intergenic not near genes chr2R 5080934 intergenic not near genes chr2R_8_5080001 chr2R_5080001 RAL-361 845 chr2R 5080794 5080814 chr2R 5080887 5080955 9 134 5.5 11.0 8.2 1.0 161 chr2R 5080794 intergenic not near genes chr2R 5080874 intergenic not near genes chr2R 5080955 intergenic not near genes chr2R_9_5080001 chr2R_5080001 RAL-361 846 chr2R 5192233 5192242 chr2R 5192315 5192360 4 121 6.0 4.5 5.2 0.6 127 chr2R 5192233 intron Nipped-A - chr2R 5192296 intron Nipped-A - chr2R 5192360 intron Nipped-A - chr2R_4_5190001 chr2R_5190001 RAL-361 847 chr2R 5192692 5192732 chr2R 5192819 5192859 12 127 9.0 13.5 11.2 1.0 167 chr2R 5192692 intron Nipped-A - chr2R 5192776 intron Nipped-A - chr2R 5192859 intron Nipped-A - chr2R_12_5190001 chr2R_5190001 RAL-361 848 chr2R 5237301 5237345 chr2R 5237433 5237471 10 131 10.5 0.0 5.2 1.6 170 chr2R 5237301 intron Nipped-A - chr2R 5237386 intron Nipped-A - chr2R 5237471 intron Nipped-A - chr2R_10_5235001 chr2R_5235001 RAL-361 849 chr2R 5301884 5301898 chr2R 5302079 5302092 5 195 16.0 13.0 14.5 0.3 208 chr2R 5301884 intergenic not near genes chr2R 5301988 intergenic not near genes chr2R 5302092 intergenic not near genes chr2R_5_5300001 chr2R_5300001 RAL-361 850 chr2R 5303441 5303516 chr2R 5303579 5303654 32 138 5.0 5.0 5.0 5.3 213 chr2R 5303441 intergenic not near genes chr2R 5303548 intergenic not near genes chr2R 5303654 intergenic not near genes chr2R_32_5300001 chr2R_5300001 RAL-361 851 chr2R 5417952 5418014 chr2R 5420634 5420696 Burdock 14 2682 6.0 8.5 7.2 1.7 2744 chr2R 5417952 intron laccase2 + chr2R 5419324 intron laccase2 + chr2R 5420696 intron laccase2 + chr2R_14_5415001 chr2R_5415001 RAL-361 852 chr2R 5450065 5450112 chr2R 5451016 5451065 baggins 15 953 14.0 5.0 9.5 1.4 1000 chr2R 5450065 intron laccase2 + chr2R 5450565 intron laccase2 + chr2R 5451065 intron laccase2 + chr2R_15_5450001 chr2R_5450001 RAL-361 853 chr2R 5472319 5472392 chr2R 5472463 5472511 23 144 7.5 5.5 6.5 3.1 192 chr2R 5472319 intron CG30440 - chr2R 5472415 intron CG30440 - chr2R 5472511 intron CG30440 - chr2R_23_5470001 chr2R_5470001 RAL-361 854 chr2R 5497636 5497657 chr2R 5498443 5498464 INE-1 11 806 5.0 12.5 8.8 1.1 828 chr2R 5497636 intron CG30438 + chr2R 5498050 intron CG30438 + chr2R 5498464 intron CG30438 + chr2R_11_5495001 chr2R_5495001 RAL-361 855 chr2R 5509509 5509549 chr2R 5509655 5509695 16 146 4.0 15.5 9.8 1.5 186 chr2R 5509509 intron CG30438 + chr2R 5509602 intron CG30438 + chr2R 5509695 intron CG30438 + chr2R_16_5505001 chr2R_5505001 RAL-361 856 chr2R 5712360 5712430 chr2R 5712608 5712681 28 249 13.0 6.5 9.8 2.6 321 chr2R 5712360 intron ap - chr2R 5712520 intron ap - chr2R 5712681 intron ap - chr2R_28_5710001 chr2R_5710001 RAL-361 857 chr2R 5750406 5750443 chr2R 5750542 5750579 15 136 21.0 8.5 14.8 0.9 173 chr2R 5750406 intergenic not near genes chr2R 5750492 intergenic not near genes chr2R 5750579 intergenic not near genes chr2R_15_5750001 chr2R_5750001 RAL-361 858 chr2R 5861240 5861320 chr2R 5861411 5861425 26 162 4.5 5.5 5.0 4.3 185 chr2R 5861240 intergenic dpr12 + chr2R 5861332 intergenic not near genes chr2R 5861425 intergenic not near genes chr2R_26_5860001 chr2R_5860001 RAL-361 859 chr2R 5869234 5869299 chr2R 5874360 5874425 flea 26 5125 10.0 12.0 11.0 2.2 5191 chr2R 5869234 intergenic not near genes chr2R 5871830 intergenic not near genes chr2R 5874425 intergenic not near genes chr2R_26_5870001 chr2R_5870001 RAL-361 860 chr2R 5878880 5878951 chr2R 5879010 5879081 24 128 7.0 3.5 5.2 3.9 201 chr2R 5878880 intergenic CG44438 - chr2R 5878980 intergenic CG44438 - chr2R 5879081 intergenic CG44438 - chr2R_24_5875001 chr2R_5875001 RAL-361 861 chr2R 5885192 5885373 chr2R 5885325 5885552 38 161 0.0 0.0 0.0 38.0 360 chr2R 5885192 5` UTR CR44125 + chr2R 5885372 5` UTR CR44125 + chr2R 5885552 5` UTR CR44125 + chr2R_38_5885001 chr2R_5885001 RAL-361 862 chr2R 5902124 5902185 chr2R 5909733 5909794 17.6 22 7608 6.5 10.5 8.5 2.3 7670 chr2R 5902124 intron CG43366 + chr2R 5905959 intron CG43366 + chr2R 5909794 intron CG43366 + chr2R_22_5905001 chr2R_5905001 RAL-361 863 chr2R 6016743 6016809 chr2R 6016877 6016943 28 133 6.5 9.5 8.0 3.1 200 chr2R 6016743 intergenic not near genes chr2R 6016843 intergenic not near genes chr2R 6016943 intergenic not near genes chr2R_28_6015001 chr2R_6015001 RAL-361 864 chr2R 6096685 6096731 chr2R 6101923 6101979 BS 18 5243 12.5 8.0 10.2 1.6 5294 chr2R 6096685 intron EcR - chr2R 6099332 intron EcR - chr2R 6101979 intron EcR - chr2R_18_6095001 chr2R_6095001 RAL-361 865 chr2R 6129273 6129351 chr2R 6129404 6129479 25 126 8.5 9.5 9.0 2.5 206 chr2R 6129273 intron EcR - chr2R 6129376 intron EcR - chr2R 6129479 intron EcR - chr2R_25_6125001 chr2R_6125001 RAL-361 866 chr2R 6168160 6168223 chr2R 6168292 6168355 33 132 6.0 11.0 8.5 3.5 195 chr2R 6168160 intron EcR - chr2R 6168258 intron EcR - chr2R 6168355 intron EcR - chr2R_33_6165001 chr2R_6165001 RAL-361 867 chr2R 6178075 6178144 chr2R 6178251 6178320 27 176 6.5 9.5 8.0 3.0 245 chr2R 6178075 intergenic not near genes chr2R 6178198 intergenic not near genes chr2R 6178320 intergenic not near genes chr2R_27_6175001 chr2R_6175001 RAL-361 868 chr2R 6194638 6194696 chr2R 6194771 6194829 22 130 11.0 13.0 12.0 1.7 191 chr2R 6194638 intron Ptr - chr2R 6194734 intron Ptr - chr2R 6194829 intron Ptr - chr2R_22_6190001 chr2R_6190001 RAL-361 869 chr2R 6494487 6494548 chr2R 6499299 6499360 F-element 17 4810 8.5 5.5 7.0 2.1 4873 chr2R 6494487 intergenic not near genes chr2R 6496924 intergenic not near genes chr2R 6499360 intergenic not near genes chr2R_17_6495001 chr2R_6495001 RAL-361 870 chr2R 6530718 6530798 chr2R 6530848 6530928 33 130 7.5 8.0 7.8 3.7 210 chr2R 6530718 intron jing + chr2R 6530823 intron jing + chr2R 6530928 intron jing + chr2R_33_6530001 chr2R_6530001 RAL-361 871 chr2R 6541032 6541093 chr2R 6541158 6541219 27 126 10.5 10.5 10.5 2.3 187 chr2R 6541032 intron jing + chr2R 6541126 intron jing + chr2R 6541219 intron jing + chr2R_27_6540001 chr2R_6540001 RAL-361 872 chr2R 6551954 6552015 chr2R 6552097 6552168 18 149 5.0 6.0 5.5 2.8 214 chr2R 6551954 intron jing + chr2R 6552061 intron jing + chr2R 6552168 intron jing + chr2R_18_6550001 chr2R_6550001 RAL-361 873 chr2R 6579734 6579795 chr2R 6584870 6584931 flea 31 5134 9.0 12.0 10.5 2.7 5197 chr2R 6579734 intron jing + chr2R 6582332 intron jing + chr2R 6584931 intron jing + chr2R_31_6580001 chr2R_6580001 RAL-361 874 chr2R 6612088 6612092 chr2R 6612218 6612222 4 130 19.0 9.0 14.0 0.3 134 chr2R 6612088 intron jing + chr2R 6612155 intron jing + chr2R 6612222 intron jing + chr2R_4_6610001 chr2R_6610001 RAL-361 875 chr2R 6612094 6612109 chr2R 6612216 6612239 6 128 14.5 9.5 12.0 0.5 145 chr2R 6612094 intron jing + chr2R 6612166 intron jing + chr2R 6612239 intron jing + chr2R_6_6610001 chr2R_6610001 RAL-361 876 chr2R 6612110 6612153 chr2R 6612209 6612283 19 126 7.5 8.0 7.8 2.2 173 chr2R 6612110 intron jing + chr2R 6612196 intron jing + chr2R 6612283 intron jing + chr2R_19_6610001 chr2R_6610001 RAL-361 877 chr2R 6633153 6633224 chr2R 6633276 6633351 31 126 9.5 9.5 9.5 3.0 198 chr2R 6633153 intergenic Vha16-1 -,Trap1 - chr2R 6633252 intergenic Vha16-1 -,Trap1 - chr2R 6633351 intergenic Vha16-1 -,Trap1 - chr2R_31_6630001 chr2R_6630001 RAL-361 878 chr2R 6646751 6646823 chr2R 6647074 6647146 22 321 6.5 9.0 7.8 2.5 395 chr2R 6646751 intergenic not near genes chr2R 6646948 intergenic not near genes chr2R 6647146 intergenic not near genes chr2R_22_6645001 chr2R_6645001 RAL-361 879 chr2R 6647292 6647309 chr2R 6647418 6647435 8 126 13.0 7.5 10.2 0.7 143 chr2R 6647292 intergenic not near genes chr2R 6647364 intergenic not near genes chr2R 6647435 intergenic not near genes chr2R_8_6645001 chr2R_6645001 RAL-361 880 chr2R 6699553 6699618 chr2R 6699688 6699752 20 135 8.0 8.0 8.0 2.2 199 chr2R 6699553 intergenic Rab2 + chr2R 6699652 intergenic Rab2 + chr2R 6699752 intergenic Rab2 +,CG3409 -,CG45092 - chr2R_20_6695001 chr2R_6695001 RAL-361 881 chr2R 6846251 6846318 chr2R 6846633 6846700 29 382 9.0 8.0 8.5 3.1 449 chr2R 6846251 intergenic not near genes chr2R 6846476 intergenic not near genes chr2R 6846700 intergenic not near genes chr2R_29_6845001 chr2R_6845001 RAL-361 882 chr2R 6857052 6857109 chr2R 6857207 6857244 28 161 5.0 7.0 6.0 4.0 192 chr2R 6857052 intergenic not near genes chr2R 6857148 intergenic not near genes chr2R 6857244 intergenic not near genes chr2R_28_6855001 chr2R_6855001 RAL-361 883 chr2R 6952123 6952185 chr2R 6959754 6959815 opus 28 7630 11.0 7.5 9.2 2.7 7692 chr2R 6952123 intron,intron,exon mim -,CheB42c -,ppk25 + chr2R 6955969 intron,intron mim -,CheB42c - chr2R 6959815 intron,intron mim -,CheB42c - chr2R_28_6955001 chr2R_6955001 RAL-361 884 chr2R 6962402 6962477 chr2R 6962809 6962884 27 407 10.0 13.0 11.5 2.2 482 chr2R 6962402 intron,intron mim -,CheB42c - chr2R 6962643 intron,intron mim -,CheB42c - chr2R 6962884 exon,5` UTR mim -,CheB42c - chr2R_27_6960001 chr2R_6960001 RAL-361 885 chr2R 7113894 7113969 chr2R 7114105 7114180 31 211 9.0 6.5 7.8 3.5 286 chr2R 7113894 intron esn + chr2R 7114037 intron esn + chr2R 7114180 intron esn + chr2R_31_7110001 chr2R_7110001 RAL-361 886 chr2R 7139866 7139953 chr2R 7141415 7141495 hopper2 8 1538 0.5 7.5 4.0 1.6 1629 chr2R 7139866 intergenic not near genes chr2R 7140680 intergenic not near genes chr2R 7141495 intergenic not near genes chr2R_8_7140001 chr2R_7140001 RAL-361 887 chr2R 7194842 7194846 chr2R 13364842 13364846 5 6170000 27.5 15.5 21.5 0.2 6170004 chr2R 7194842 intron pk + chr2R 10279844 intron CAP + chr2R 13364846 intergenic not near genes chr2R_5_10275001 chr2R_10275001 RAL-361 888 chr2R 7196525 7196587 chr2R 7201350 7201412 F-element 32 4825 11.0 11.0 11.0 2.7 4887 chr2R 7196525 intron pk + chr2R 7198968 intron pk + chr2R 7201412 intron pk + chr2R_32_7195001 chr2R_7195001 RAL-361 889 chr2R 7209844 7209874 chr2R 7217654 7217685 roo 6 7811 9.5 17.5 13.5 0.4 7841 chr2R 7209844 intron pk + chr2R 7213764 intron pk + chr2R 7217685 intron pk + chr2R_6_7210001 chr2R_7210001 RAL-361 890 chr2R 7235780 7235818 chr2R 7240922 7240960 jockey 18 5140 13.5 7.0 10.2 1.6 5180 chr2R 7235780 intergenic not near genes chr2R 7238370 intergenic not near genes chr2R 7240960 intergenic not near genes chr2R_18_7235001 chr2R_7235001 RAL-361 891 chr2R 7235821 7235851 chr2R 7240918 7240942 jockey 9 5125 9.0 6.5 7.8 1.0 5121 chr2R 7235821 intergenic not near genes chr2R 7238382 intergenic not near genes chr2R 7240942 intergenic not near genes chr2R_9_7235001 chr2R_7235001 RAL-361 892 chr2R 7262160 7262218 chr2R 7269263 7269265 297 6 7082 4.0 9.0 6.5 0.8 7105 chr2R 7262160 intergenic not near genes chr2R 7265712 intergenic not near genes chr2R 7269265 intergenic not near genes chr2R_6_7265001 chr2R_7265001 RAL-361 893 chr2R 7306522 7306587 chr2R 7306650 7306650 33 126 9.0 9.5 9.2 3.2 128 chr2R 7306522 intergenic not near genes chr2R 7306586 intergenic not near genes chr2R 7306650 intergenic not near genes chr2R_33_7305001 chr2R_7305001 RAL-361 894 chr2R 7353348 7353415 chr2R 7353504 7353520 28 154 7.5 12.0 9.8 2.6 172 chr2R 7353348 intron Dscam1 - chr2R 7353434 intron Dscam1 - chr2R 7353520 intron Dscam1 - chr2R_28_7350001 chr2R_7350001 RAL-361 895 chr2R 7370968 7371053 chr2R 7371130 7371196 26 157 0.0 11.0 5.5 4.0 228 chr2R 7370968 intron Dscam1 - chr2R 7371082 intron Dscam1 - chr2R 7371196 intron Dscam1 - chr2R_26_7370001 chr2R_7370001 RAL-361 896 chr2R 7405346 7405355 chr2R 7405667 7405676 7 321 18.5 10.0 14.2 0.5 330 chr2R 7405346 intron Eaf - chr2R 7405511 intron Eaf - chr2R 7405676 intron Eaf - chr2R_7_7405001 chr2R_7405001 RAL-361 897 chr2R 7405358 7405416 chr2R 7405663 7405737 29 320 6.0 8.5 7.2 3.5 379 chr2R 7405358 intron Eaf - chr2R 7405548 intron Eaf - chr2R 7405737 intron Eaf - chr2R_29_7405001 chr2R_7405001 RAL-361 898 chr2R 7434849 7434907 chr2R 7439200 7439258 Juan 24 4351 13.5 17.5 15.5 1.5 4409 chr2R 7434849 3` UTR so + chr2R 7437054 intergenic not near genes chr2R 7439258 intergenic not near genes chr2R_24_7435001 chr2R_7435001 RAL-361 899 chr2R 7459236 7459250 chr2R 7459374 7459388 6 138 22.5 8.5 15.5 0.4 152 chr2R 7459236 intergenic Inos -,CG11141 - chr2R 7459312 intergenic CG11141 -,Inos - chr2R 7459388 intergenic CG11141 - chr2R_6_7455001 chr2R_7455001 RAL-361 900 chr2R 7551638 7551704 chr2R 7551779 7551845 24 141 10.5 11.0 10.8 2.0 207 chr2R 7551638 intron Corin + chr2R 7551742 intron Corin + chr2R 7551845 intron Corin + chr2R_24_7550001 chr2R_7550001 RAL-361 901 chr2R 7608338 7608424 chr2R 7613605 7613676 I-element 14 5254 0.0 0.0 0.0 14.0 5338 chr2R 7608338 intron CG1358 - chr2R 7611007 intron CG1358 - chr2R 7613676 intron CG1358 - chr2R_14_7610001 chr2R_7610001 RAL-361 902 chr2R 7642293 7642354 chr2R 7642510 7642571 33 213 10.0 6.0 8.0 3.7 278 chr2R 7642293 intron CG43340 + chr2R 7642432 intron CG43340 + chr2R 7642571 intron CG43340 + chr2R_33_7640001 chr2R_7640001 RAL-361 903 chr2R 7642817 7642887 chr2R 7642947 7643017 32 129 10.0 6.5 8.2 3.5 200 chr2R 7642817 intron CG43340 + chr2R 7642917 intron CG43340 + chr2R 7643017 intron CG43340 + chr2R_32_7640001 chr2R_7640001 RAL-361 904 chr2R 7742573 7742612 chr2R 7742878 7742891 14 303 2.0 8.0 5.0 2.3 318 chr2R 7742573 intron,intron CG30497 -,CG45093 - chr2R 7742732 intron,intron CG30497 -,CG45093 - chr2R 7742891 intron,intron CG30497 -,CG45093 - chr2R_14_7740001 chr2R_7740001 RAL-361 905 chr2R 7759631 7759695 chr2R 7759771 7759835 26 140 12.5 7.5 10.0 2.4 204 chr2R 7759631 intron,intron CG30497 -,CG45093 - chr2R 7759733 intron,intron CG30497 -,CG45093 - chr2R 7759835 intron,intron CG30497 -,CG45093 - chr2R_26_7755001 chr2R_7755001 RAL-361 906 chr2R 7800388 7800415 chr2R 7802499 7802561 19 2126 46.0 53.0 49.5 0.4 2173 chr2R 7800388 exon mus205 + chr2R 7801474 exon Nop17l - chr2R 7802561 exon Nop17l - chr2R_19_7800001 chr2R_7800001 RAL-361 907 chr2R 7815625 7815696 chr2R 7822144 7822215 Burdock 33 6519 5.5 7.5 6.5 4.4 6590 chr2R 7815625 intergenic CG1882 + chr2R 7818920 intergenic not near genes chr2R 7822215 3` UTR cathD - chr2R_33_7815001 chr2R_7815001 RAL-361 908 chr2R 7862236 7862251 chr2R 7867370 7867386 flea 4 5134 13.5 10.5 12.0 0.3 5150 chr2R 7862236 intron Dgk - chr2R 7864811 intron Dgk - chr2R 7867386 intron Dgk - chr2R_4_7860001 chr2R_7860001 RAL-361 909 chr2R 7869146 7869180 chr2R 7873982 7874015 Doc 12 4836 16.0 8.0 12.0 0.9 4869 chr2R 7869146 intron Dgk - chr2R 7871580 intron Dgk - chr2R 7874015 intron Dgk - chr2R_12_7870001 chr2R_7870001 RAL-361 910 chr2R 7869181 7869204 chr2R 7873977 7874026 Doc 8 4827 11.5 7.5 9.5 0.8 4845 chr2R 7869181 intron Dgk - chr2R 7871604 intron Dgk - chr2R 7874026 intron Dgk - chr2R_8_7870001 chr2R_7870001 RAL-361 911 chr2R 7897138 7897144 chr2R 7897277 7897283 5 139 0.0 23.5 11.8 0.4 145 chr2R 7897138 intron CG30377 + chr2R 7897210 intron CG30377 + chr2R 7897283 intron CG30377 + chr2R_5_7895001 chr2R_7895001 RAL-361 912 chr2R 7916378 7916451 chr2R 7916512 7916586 34 133 7.5 8.0 7.8 3.9 208 chr2R 7916378 5` UTR CG12159 - chr2R 7916482 intergenic CG12159 -,Cul1 + chr2R 7916586 intergenic CG12159 -,Cul1 + chr2R_34_7915001 chr2R_7915001 RAL-361 913 chr2R 7996977 7997040 chr2R 7997104 7997178 19 133 10.0 9.5 9.8 1.8 201 chr2R 7996977 intron Hey - chr2R 7997078 intron Hey - chr2R 7997178 intron Hey - chr2R_19_7995001 chr2R_7995001 RAL-361 914 chr2R 8015612 8015676 chr2R 8017683 8017717 32 2064 11.5 9.0 10.2 2.9 2105 chr2R 8015612 intergenic mir-4981 + chr2R 8016664 intergenic not near genes chr2R 8017717 intergenic not near genes chr2R_32_8015001 chr2R_8015001 RAL-361 915 chr2R 8026760 8026837 chr2R 8026886 8026963 41 126 9.5 11.5 10.5 3.6 203 chr2R 8026760 intergenic CR45267 + chr2R 8026862 intergenic CR45267 + chr2R 8026963 intergenic CR45267 + chr2R_41_8025001 chr2R_8025001 RAL-361 916 chr2R 8028519 8028593 chr2R 8028650 8028724 33 130 7.5 10.0 8.8 3.4 205 chr2R 8028519 intergenic CR43724 - chr2R 8028622 intergenic CR43724 - chr2R 8028724 intergenic CR43724 - chr2R_33_8025001 chr2R_8025001 RAL-361 917 chr2R 8160884 8160941 chr2R 8161024 8161081 1360 23 138 11.0 11.5 11.2 1.9 197 chr2R 8160884 exon CG8708 - chr2R 8160982 intron CG8708 - chr2R 8161081 intron CG8708 - chr2R_23_8160001 chr2R_8160001 RAL-361 918 chr2R 8203710 8203754 chr2R 8203850 8203896 25 141 12.0 6.0 9.0 2.5 186 chr2R 8203710 intron LRP1 + chr2R 8203803 intron LRP1 + chr2R 8203896 intron LRP1 + chr2R_25_8200001 chr2R_8200001 RAL-361 919 chr2R 8235987 8236029 chr2R 8236118 8236159 13 129 8.0 8.0 8.0 1.4 172 chr2R 8235987 intergenic not near genes chr2R 8236073 intergenic not near genes chr2R 8236159 intergenic not near genes chr2R_13_8235001 chr2R_8235001 RAL-361 920 chr2R 8249528 8249598 chr2R 8249660 8249730 24 132 9.0 11.0 10.0 2.2 202 chr2R 8249528 5` UTR CG44439 - chr2R 8249629 intergenic CG44439 - chr2R 8249730 intergenic CG44439 - chr2R_24_8245001 chr2R_8245001 RAL-361 921 chr2R 8330822 8330882 chr2R 8331358 8331418 roo 27 536 16.0 10.0 13.0 1.9 596 chr2R 8330822 intron pdm3 + chr2R 8331120 intron pdm3 + chr2R 8331418 intron pdm3 + chr2R_27_8330001 chr2R_8330001 RAL-361 922 chr2R 8398171 8398232 chr2R 8403001 8403063 Doc 26 4826 10.5 5.0 7.8 3.0 4892 chr2R 8398171 intron CG2121 - chr2R 8400617 intron CG2121 - chr2R 8403063 intron CG2121 - chr2R_26_8400001 chr2R_8400001 RAL-361 923 chr2R 8416267 8416284 chr2R 8417141 8417158 I-element 9 874 18.0 14.0 16.0 0.5 891 chr2R 8416267 intergenic not near genes chr2R 8416712 intergenic CG43296 - chr2R 8417158 intergenic CG43296 - chr2R_9_8415001 chr2R_8415001 RAL-361 924 chr2R 8478175 8478249 chr2R 8478317 8478378 32 135 9.0 12.5 10.8 2.7 203 chr2R 8478175 intron mtt - chr2R 8478276 intron mtt - chr2R 8478378 intron mtt - chr2R_32_8475001 chr2R_8475001 RAL-361 925 chr2R 8490578 8490582 chr2R 8492338 8492359 Rt1c 4 1772 15.5 26.0 20.8 0.2 1781 chr2R 8490578 intron mtt - chr2R 8491468 intron mtt - chr2R 8492359 intron mtt - chr2R_4_8490001 chr2R_8490001 RAL-361 926 chr2R 8495547 8495556 chr2R 8495691 8495700 4 144 25.5 9.5 17.5 0.2 153 chr2R 8495547 intron mtt - chr2R 8495624 intron mtt - chr2R 8495700 intron mtt - chr2R_4_8495001 chr2R_8495001 RAL-361 927 chr2R 8495558 8495616 chr2R 8495690 8495760 20 142 9.0 9.5 9.2 2.0 202 chr2R 8495558 intron mtt - chr2R 8495659 intron mtt - chr2R 8495760 intron mtt - chr2R_20_8495001 chr2R_8495001 RAL-361 928 chr2R 8517664 8517734 chr2R 8517816 8517886 32 152 9.0 7.5 8.2 3.5 222 chr2R 8517664 intron mtt - chr2R 8517775 intron mtt - chr2R 8517886 intron mtt - chr2R_32_8515001 chr2R_8515001 RAL-361 929 chr2R 8563701 8563745 chr2R 8564889 8564892 16 1182 10.5 4.5 7.5 1.9 1191 chr2R 8563701 intergenic Cyp6a14 - chr2R 8564296 3` UTR Cyp6a14 - chr2R 8564892 exon Cyp6a14 - chr2R_16_8560001 chr2R_8560001 RAL-361 930 chr2R 8563757 8563774 chr2R 8564884 8564962 9 1178 6.0 4.5 5.2 1.5 1205 chr2R 8563757 intergenic Cyp6a14 - chr2R 8564360 exon Cyp6a14 - chr2R 8564962 exon Cyp6a14 - chr2R_9_8560001 chr2R_8560001 RAL-361 931 chr2R 8566018 8566062 chr2R 8567013 8567058 1360 22 996 9.5 17.5 13.5 1.5 1040 chr2R 8566018 5` UTR Cyp6a14 - chr2R 8566538 5` UTR Cyp6a14 - chr2R 8567058 5` UTR Cyp6a14 - chr2R_22_8565001 chr2R_8565001 RAL-361 932 chr2R 8687334 8687404 chr2R 8687560 8687614 22 224 9.5 5.0 7.2 2.7 280 chr2R 8687334 intergenic not near genes chr2R 8687474 intergenic not near genes chr2R 8687614 intergenic not near genes chr2R_22_8685001 chr2R_8685001 RAL-361 933 chr2R 8714708 8714721 chr2R 8714845 8714857 5 137 0.0 18.5 9.2 0.5 149 chr2R 8714708 3` UTR PGRP-SC1b + chr2R 8714782 3` UTR PGRP-SC1b + chr2R 8714857 3` UTR PGRP-SC1b + chr2R_5_8710001 chr2R_8710001 RAL-361 934 chr2R 8722725 8722788 chr2R 8723004 8723079 pogo 21 284 12.0 7.0 9.5 2.0 354 chr2R 8722725 intron CG14767 - chr2R 8722902 intron CG14767 - chr2R 8723079 intron CG14767 - chr2R_21_8720001 chr2R_8720001 RAL-361 935 chr2R 8759711 8759784 chr2R 8759840 8759913 21 125 7.5 9.0 8.2 2.3 202 chr2R 8759711 intergenic CG8740 + chr2R 8759812 intergenic CG8740 + chr2R 8759913 intergenic CG8740 + chr2R_21_8755001 chr2R_8755001 RAL-361 936 chr2R 8777874 8777945 chr2R 8784127 8784199 diver 23 6252 5.5 6.0 5.8 3.4 6325 chr2R 8777874 intergenic not near genes chr2R 8781036 intergenic not near genes chr2R 8784199 intergenic not near genes chr2R_23_8780001 chr2R_8780001 RAL-361 937 chr2R 8833381 8833451 chr2R 8833509 8833583 43 128 8.5 7.0 7.8 4.9 202 chr2R 8833381 intron sns + chr2R 8833482 intron sns + chr2R 8833583 intron sns + chr2R_43_8830001 chr2R_8830001 RAL-361 938 chr2R 8907194 8907262 chr2R 8907493 8907561 25 296 6.0 9.0 7.5 2.9 367 chr2R 8907194 intergenic CG8258 -,CG30349 + chr2R 8907378 intergenic CG30349 +,CG8258 - chr2R 8907561 5` UTR CG30349 + chr2R_25_8905001 chr2R_8905001 RAL-361 939 chr2R 8958369 8958432 chr2R 8958502 8958575 28 143 10.5 8.0 9.2 2.7 206 chr2R 8958369 intron babo + chr2R 8958472 intron babo + chr2R 8958575 intron babo + chr2R_28_8955001 chr2R_8955001 RAL-361 940 chr2R 9047293 9047435 chr2R 9047427 9047580 26 157 0.0 0.0 0.0 26.0 287 chr2R 9047293 intron CG13743 - chr2R 9047436 intron CG13743 - chr2R 9047580 intron CG13743 - chr2R_26_9045001 chr2R_9045001 RAL-361 941 chr2R 9052664 9052698 chr2R 9052795 9052809 13 129 20.5 0.0 10.2 1.2 145 chr2R 9052664 intron CG13743 - chr2R 9052736 intron CG13743 - chr2R 9052809 intron CG13743 - chr2R_13_9050001 chr2R_9050001 RAL-361 942 chr2R 9052699 9052735 chr2R 9052785 9052884 12 142 8.5 1.0 4.8 2.1 185 chr2R 9052699 intron CG13743 - chr2R 9052792 intron CG13743 - chr2R 9052884 intron CG13743 - chr2R_12_9050001 chr2R_9050001 RAL-361 943 chr2R 9079362 9079410 chr2R 9079518 9079566 17 153 8.5 8.5 8.5 1.8 204 chr2R 9079362 intron CG8083 + chr2R 9079464 intron CG8083 + chr2R 9079566 intron CG8083 + chr2R_17_9075001 chr2R_9075001 RAL-361 944 chr2R 9079412 9079437 chr2R 9079509 9079593 9 141 3.5 6.5 5.0 1.5 181 chr2R 9079412 intron CG8083 + chr2R 9079502 intron CG8083 + chr2R 9079593 intron CG8083 + chr2R_9_9075001 chr2R_9075001 RAL-361 945 chr2R 9110097 9110165 chr2R 9110236 9110304 34 138 12.0 8.0 10.0 3.1 207 chr2R 9110097 intergenic Pmm45A - chr2R 9110200 intergenic Pmm45A - chr2R 9110304 intergenic tsu + chr2R_34_9110001 chr2R_9110001 RAL-361 946 chr2R 9151257 9151329 chr2R 9157777 9157848 Burdock 35 6519 10.0 14.5 12.2 2.7 6591 chr2R 9151257 exon CG30345 + chr2R 9154552 intergenic not near genes chr2R 9157848 intergenic CG8008 - chr2R_35_9150001 chr2R_9150001 RAL-361 947 chr2R 9212653 9212718 chr2R 9213189 9213208 roo 18 531 11.5 13.5 12.5 1.3 555 chr2R 9212653 intergenic CR45309 + chr2R 9212930 intergenic CR45309 + chr2R 9213208 5` UTR CR45309 + chr2R_18_9210001 chr2R_9210001 RAL-361 948 chr2R 9267933 9268002 chr2R 9268069 9268138 36 136 11.0 0.0 5.5 5.5 205 chr2R 9267933 exon Pkn - chr2R 9268036 intron Pkn - chr2R 9268138 intron Pkn - chr2R_36_9265001 chr2R_9265001 RAL-361 949 chr2R 9368075 9368129 chr2R 9368201 9368239 17 110 11.5 1.0 6.2 2.4 164 chr2R 9368075 intron CG13954 - chr2R 9368157 intron CG13954 - chr2R 9368239 intron CG13954 - chr2R_17_9365001 chr2R_9365001 RAL-361 950 chr2R 9408181 9408253 chr2R 9408314 9408386 40 132 11.0 12.5 11.8 3.1 205 chr2R 9408181 intron wun - chr2R 9408284 intron wun - chr2R 9408386 intron wun - chr2R_40_9405001 chr2R_9405001 RAL-361 951 chr2R 9466629 9466678 chr2R 9466760 9466809 10 124 8.5 4.5 6.5 1.3 180 chr2R 9466629 intron Camta + chr2R 9466719 intron Camta + chr2R 9466809 intron Camta + chr2R_10_9465001 chr2R_9465001 RAL-361 952 chr2R 9466679 9466684 chr2R 9466757 9466814 6 111 6.5 4.5 5.5 0.9 135 chr2R 9466679 intron Camta + chr2R 9466746 intron Camta + chr2R 9466814 intron Camta + chr2R_6_9465001 chr2R_9465001 RAL-361 953 chr2R 9467709 9467756 chr2R 9467844 9467891 20 134 6.5 10.5 8.5 2.1 182 chr2R 9467709 intron Camta + chr2R 9467800 intron Camta + chr2R 9467891 intron Camta + chr2R_20_9465001 chr2R_9465001 RAL-361 954 chr2R 9480035 9480075 chr2R 9490616 9490656 roo 12 10581 13.0 10.5 11.8 0.9 10621 chr2R 9480035 intergenic not near genes chr2R 9485346 intergenic not near genes chr2R 9490656 intergenic not near genes chr2R_12_9485001 chr2R_9485001 RAL-361 955 chr2R 9551165 9551235 chr2R 9551307 9551377 33 141 9.0 9.0 9.0 3.3 212 chr2R 9551165 intergenic not near genes chr2R 9551271 intergenic not near genes chr2R 9551377 intergenic not near genes chr2R_33_9550001 chr2R_9550001 RAL-361 956 chr2R 9561791 9561835 chr2R 9561928 9561973 11 137 4.5 10.5 7.5 1.3 182 chr2R 9561791 3` UTR,intron CR45281 -,CG1809 + chr2R 9561882 3` UTR,intron CR45281 -,CG1809 + chr2R 9561973 3` UTR,intron CR45281 -,CG1809 + chr2R_11_9560001 chr2R_9560001 RAL-361 957 chr2R 9566687 9566694 chr2R 9566820 9566827 4 133 10.5 6.0 8.2 0.4 140 chr2R 9566687 3` UTR Not1 - chr2R 9566757 3` UTR Not1 - chr2R 9566827 3` UTR Not1 - chr2R_4_9565001 chr2R_9565001 RAL-361 958 chr2R 9617738 9617809 chr2R 9618046 9618117 39 308 10.5 6.5 8.5 4.1 379 chr2R 9617738 intron Mmp2 - chr2R 9617928 intron Mmp2 - chr2R 9618117 intron Mmp2 - chr2R_39_9615001 chr2R_9615001 RAL-361 959 chr2R 9651001 9651063 chr2R 9651134 9651194 20 132 10.5 11.0 10.8 1.7 193 chr2R 9651001 intron Mmp2 - chr2R 9651098 intron Mmp2 - chr2R 9651194 intron Mmp2 - chr2R_20_9650001 chr2R_9650001 RAL-361 960 chr2R 9726567 9726634 chr2R 9734170 9734237 17.6 24 7603 7.0 10.0 8.5 2.5 7670 chr2R 9726567 intron sqa - chr2R 9730402 intron sqa - chr2R 9734237 intron sqa - chr2R_24_9730001 chr2R_9730001 RAL-361 961 chr2R 9741750 9741802 chr2R 9741885 9741897 10 130 11.5 21.0 16.2 0.6 147 chr2R 9741750 intron sqa - chr2R 9741824 intron sqa - chr2R 9741897 intron sqa - chr2R_10_9740001 chr2R_9740001 RAL-361 962 chr2R 9832798 9832822 chr2R 9832937 9832961 7 139 14.5 5.0 9.8 0.6 163 chr2R 9832798 intron hebe - chr2R 9832880 intron hebe - chr2R 9832961 intron hebe - chr2R_7_9830001 chr2R_9830001 RAL-361 963 chr2R 9869639 9869697 chr2R 9869800 9869858 13 161 4.5 8.5 6.5 1.7 219 chr2R 9869639 intron cbx - chr2R 9869748 intron cbx - chr2R 9869858 intron cbx - chr2R_13_9865001 chr2R_9865001 RAL-361 964 chr2R 9870999 9871068 chr2R 9871535 9871569 roo 33 531 0.5 12.5 6.5 4.4 570 chr2R 9870999 intron cbx - chr2R 9871284 intron cbx - chr2R 9871569 intron,5` UTR cbx -,CG18446 + chr2R_33_9870001 chr2R_9870001 RAL-361 965 chr2R 9921157 9921176 chr2R 9921288 9921307 7 131 29.5 15.5 22.5 0.3 150 chr2R 9921157 intron Mef2 - chr2R 9921232 intron Mef2 - chr2R 9921307 intron Mef2 - chr2R_7_9920001 chr2R_9920001 RAL-361 966 chr2R 9975877 9975951 chr2R 9976042 9976113 14 164 7.5 7.5 7.5 1.6 236 chr2R 9975877 intergenic not near genes chr2R 9975995 intergenic not near genes chr2R 9976113 intergenic not near genes chr2R_14_9975001 chr2R_9975001 RAL-361 967 chr2R 9987760 9987769 chr2R 9987926 9987935 5 166 24.0 11.5 17.8 0.3 175 chr2R 9987760 intergenic CR45324 - chr2R 9987848 intergenic CR45324 - chr2R 9987935 intergenic CR45324 - chr2R_5_9985001 chr2R_9985001 RAL-361 968 chr2R 9987771 9987833 chr2R 9987924 9987999 29 162 7.0 11.5 9.2 2.8 228 chr2R 9987771 intergenic CR45324 - chr2R 9987885 intergenic CR45324 - chr2R 9987999 intergenic CR45324 - chr2R_29_9985001 chr2R_9985001 RAL-361 969 chr2R 10017606 10017673 chr2R 10017735 10017802 29 127 8.5 7.0 7.8 3.3 196 chr2R 10017606 intron Pka-R2 - chr2R 10017704 intron Pka-R2 - chr2R 10017802 intron Pka-R2 - chr2R_29_10015001 chr2R_10015001 RAL-361 970 chr2R 10047775 10047831 chr2R 10047908 10047964 14 133 12.0 11.0 11.5 1.1 189 chr2R 10047775 intron oys - chr2R 10047870 intron oys - chr2R 10047964 intron oys - chr2R_14_10045001 chr2R_10045001 RAL-361 971 chr2R 10086886 10086934 chr2R 10087018 10087064 23 137 7.5 6.0 6.8 2.9 178 chr2R 10086886 intron,exon CG2269 +,sut4 - chr2R 10086975 intron,5` UTR CG2269 +,sut4 - chr2R 10087064 intron,5` UTR CG2269 +,sut4 - chr2R_23_10085001 chr2R_10085001 RAL-361 972 chr2R 10132139 10132214 chr2R 10132269 10132344 29 129 9.0 12.0 10.5 2.5 205 chr2R 10132139 exon gem + chr2R 10132242 intron gem + chr2R 10132344 exon gem + chr2R_29_10130001 chr2R_10130001 RAL-361 973 chr2R 10171073 10171138 chr2R 10171207 10171271 26 134 0.0 10.5 5.2 4.2 198 chr2R 10171073 intron KCNQ - chr2R 10171172 intron KCNQ - chr2R 10171271 intron KCNQ - chr2R_26_10170001 chr2R_10170001 RAL-361 974 chr2R 10176840 10176911 chr2R 10186057 10186128 roo 33 9217 5.0 14.0 9.5 3.1 9288 chr2R 10176840 intron KCNQ - chr2R 10181484 intron KCNQ - chr2R 10186128 intron KCNQ - chr2R_33_10180001 chr2R_10180001 RAL-361 975 chr2R 10203591 10203660 chr2R 10203726 10203795 30 135 14.0 5.5 9.8 2.8 204 chr2R 10203591 intergenic not near genes chr2R 10203693 intergenic not near genes chr2R 10203795 intergenic not near genes chr2R_30_10200001 chr2R_10200001 RAL-361 976 chr2R 10216142 10216161 chr2R 10216270 10216289 6 128 17.0 6.0 11.5 0.5 147 chr2R 10216142 intron,intron CG12912 -,Hr46 - chr2R 10216216 intron,intron CG12912 -,Hr46 - chr2R 10216289 intron,intron CG12912 -,Hr46 - chr2R_6_10215001 chr2R_10215001 RAL-361 977 chr2R 10216163 10216210 chr2R 10216269 10216331 11 123 9.0 6.0 7.5 1.3 168 chr2R 10216163 intron,intron CG12912 -,Hr46 - chr2R 10216247 intron,intron CG12912 -,Hr46 - chr2R 10216331 intron,intron CG12912 -,Hr46 - chr2R_11_10215001 chr2R_10215001 RAL-361 978 chr2R 10257117 10257182 chr2R 10257258 10257323 31 141 10.5 0.0 5.2 5.0 206 chr2R 10257117 intron CG12911 + chr2R 10257220 intron CG12911 + chr2R 10257323 intron CG12911 + chr2R_31_10255001 chr2R_10255001 RAL-361 979 chr2R 10263115 10263120 chr2R 10263248 10263253 5 133 0.0 0.0 0.0 5.0 138 chr2R 10263115 3` UTR CR30009 - chr2R 10263184 3` UTR CR30009 - chr2R 10263253 3` UTR CR30009 - chr2R_5_10260001 chr2R_10260001 RAL-361 980 chr2R 10266471 10266527 chr2R 10266586 10266622 17 117 10.5 5.5 8.0 1.9 151 chr2R 10266471 intron CG12910 + chr2R 10266546 intron CG12910 + chr2R 10266622 intron CG12910 + chr2R_17_10265001 chr2R_10265001 RAL-361 981 chr2R 10274771 10274826 chr2R 10274897 10274913 15 123 10.0 1.5 5.8 2.2 142 chr2R 10274771 intron CAP + chr2R 10274842 intron CAP + chr2R 10274913 intron CAP + chr2R_15_10270001 chr2R_10270001 RAL-361 982 chr2R 10307036 10307096 chr2R 10307162 10307222 23 126 4.5 10.5 7.5 2.7 186 chr2R 10307036 3` UTR JhI-1 - chr2R 10307129 3` UTR JhI-1 - chr2R 10307222 3` UTR JhI-1 - chr2R_23_10305001 chr2R_10305001 RAL-361 983 chr2R 10313288 10313339 chr2R 10313426 10313476 27 138 0.0 0.5 0.2 22.5 188 chr2R 10313288 intergenic not near genes chr2R 10313382 intergenic not near genes chr2R 10313476 intergenic Ndg + chr2R_27_10310001 chr2R_10310001 RAL-361 984 chr2R 10322026 10322079 chr2R 10322158 10322211 24 132 8.0 10.5 9.2 2.4 185 chr2R 10322026 3` UTR Ndg + chr2R 10322118 intergenic Ndg + chr2R 10322211 intergenic Ndg + chr2R_24_10320001 chr2R_10320001 RAL-361 985 chr2R 10370388 10370435 chr2R 10370613 10370662 6 225 9.0 0.0 4.5 1.1 274 chr2R 10370388 intron CG42732 - chr2R 10370525 intron CG42732 - chr2R 10370662 intron CG42732 - chr2R_6_10370001 chr2R_10370001 RAL-361 986 chr2R 10387986 10387998 chr2R 10388120 10388145 5 141 0.0 8.0 4.0 1.0 159 chr2R 10387986 intron CG42732 - chr2R 10388066 intron CG42732 - chr2R 10388145 intron CG42732 - chr2R_5_10385001 chr2R_10385001 RAL-361 987 chr2R 10409010 10409085 chr2R 10409137 10409211 30 126 1.5 9.0 5.2 4.8 201 chr2R 10409010 intron CG42732 - chr2R 10409110 intron CG42732 - chr2R 10409211 intron,exon CG42732 -,CG33477 - chr2R_30_10405001 chr2R_10405001 RAL-361 988 chr2R 10411763 10411827 chr2R 10411895 10411959 23 132 5.5 6.5 6.0 3.3 196 chr2R 10411763 intron CG42732 - chr2R 10411861 intron CG42732 - chr2R 10411959 intron CG42732 - chr2R_23_10410001 chr2R_10410001 RAL-361 989 chr2R 10417923 10417948 chr2R 10418080 10418084 5 153 0.0 18.5 9.2 0.5 161 chr2R 10417923 intergenic not near genes chr2R 10418004 intergenic not near genes chr2R 10418084 intergenic not near genes chr2R_5_10415001 chr2R_10415001 RAL-361 990 chr2R 10428970 10429038 chr2R 10429097 10429145 15 125 6.0 5.5 5.8 2.2 175 chr2R 10428970 intergenic not near genes chr2R 10429058 intergenic not near genes chr2R 10429145 intergenic not near genes chr2R_15_10425001 chr2R_10425001 RAL-361 991 chr2R 10454054 10454078 chr2R 10454181 10454205 17 125 22.0 11.5 16.8 1.0 151 chr2R 10454054 intron,intron Galphao +,Cyp49a1 - chr2R 10454130 intron,intron Galphao +,Cyp49a1 - chr2R 10454205 intron,intron Galphao +,Cyp49a1 - chr2R_17_10450001 chr2R_10450001 RAL-361 992 chr2R 10454081 10454126 chr2R 10454180 10454253 33 124 11.0 12.5 11.8 2.6 172 chr2R 10454081 intron,intron Galphao +,Cyp49a1 - chr2R 10454167 intron,intron Galphao +,Cyp49a1 - chr2R 10454253 intron,intron Galphao +,Cyp49a1 - chr2R_33_10450001 chr2R_10450001 RAL-361 993 chr2R 10562947 10562987 chr2R 10563075 10563115 12 128 4.5 0.0 2.2 3.8 168 chr2R 10562947 intron psq + chr2R 10563031 intron psq + chr2R 10563115 intron psq + chr2R_12_10560001 chr2R_10560001 RAL-361 994 chr2R 10563229 10563524 chr2R 10563377 10563654 11 131 19.5 13.5 16.5 0.6 425 chr2R 10563229 intron psq + chr2R 10563442 intron psq + chr2R 10563654 intron psq + chr2R_11_10560001 chr2R_10560001 RAL-361 995 chr2R 10563550 10563579 chr2R 10563640 10563704 18 123 10.0 11.0 10.5 1.6 154 chr2R 10563550 intron psq + chr2R 10563627 intron psq + chr2R 10563704 intron psq + chr2R_18_10560001 chr2R_10560001 RAL-361 996 chr2R 10563902 10563923 chr2R 10564143 10564164 10 241 0.0 15.5 7.8 1.1 262 chr2R 10563902 intron psq + chr2R 10564033 intron psq + chr2R 10564164 intron psq + chr2R_10_10560001 chr2R_10560001 RAL-361 997 chr2R 10571572 10571656 chr2R 10571704 10571783 9 130 0.0 0.0 0.0 9.0 211 chr2R 10571572 intron psq + chr2R 10571678 intron psq + chr2R 10571783 intron psq + chr2R_9_10570001 chr2R_10570001 RAL-361 998 chr2R 10574592 10574635 chr2R 10574724 10574767 19 131 14.0 17.5 15.8 1.1 175 chr2R 10574592 intron psq + chr2R 10574680 intron psq + chr2R 10574767 intron psq + chr2R_19_10570001 chr2R_10570001 RAL-361 999 chr2R 10622309 10622339 chr2R 10637124 10637138 mdg1 10 14812 19.5 7.5 13.5 0.7 14829 chr2R 10622309 intron CG11883 + chr2R 10629724 intron CG11883 + chr2R 10637138 intron CG11883 + chr2R_10_10625001 chr2R_10625001 RAL-361 1000 chr2R 10644010 10644060 chr2R 10644138 10644188 26 128 7.0 0.0 3.5 5.8 178 chr2R 10644010 intron Git - chr2R 10644099 intron Git - chr2R 10644188 intron Git - chr2R_26_10640001 chr2R_10640001 RAL-361 1001 chr2R 10796656 10796733 chr2R 10796805 10796882 21 148 7.5 4.0 5.8 3.1 226 chr2R 10796656 intron CG33144 - chr2R 10796769 intron CG33144 - chr2R 10796882 intron CG33144 - chr2R_21_10795001 chr2R_10795001 RAL-361 1002 chr2R 10860506 10860513 chr2R 10860632 10860639 4 126 9.5 0.0 4.8 0.7 133 chr2R 10860506 intron CG30015 - chr2R 10860572 intron CG30015 - chr2R 10860639 intron CG30015 - chr2R_4_10860001 chr2R_10860001 RAL-361 1003 chr2R 10924554 10924566 chr2R 10924662 10924662 5 111 3.0 16.5 9.8 0.5 108 chr2R 10924554 intergenic not near genes chr2R 10924608 intergenic not near genes chr2R 10924662 intergenic not near genes chr2R_5_10920001 chr2R_10920001 RAL-361 1004 chr2R 10926553 10926630 chr2R 10926711 10926806 13 157 4.0 1.5 2.8 3.4 253 chr2R 10926553 intergenic not near genes chr2R 10926680 intergenic not near genes chr2R 10926806 intergenic not near genes chr2R_13_10925001 chr2R_10925001 RAL-361 1005 chr2R 10948023 10948047 chr2R 10955617 10955646 17.6 10 7606 2.5 13.0 7.8 1.1 7623 chr2R 10948023 intergenic not near genes chr2R 10951834 intergenic not near genes chr2R 10955646 intergenic not near genes chr2R_10_10950001 chr2R_10950001 RAL-361 1006 chr2R 10974813 10974875 chr2R 10974945 10975007 33 132 10.0 9.5 9.8 3.1 194 chr2R 10974813 intergenic not near genes chr2R 10974910 intergenic not near genes chr2R 10975007 intergenic not near genes chr2R_33_10970001 chr2R_10970001 RAL-361 1007 chr2R 10979612 10979675 chr2R 10980132 10980195 297 24 513 12.0 12.0 12.0 1.8 583 chr2R 10979612 intergenic not near genes chr2R 10979904 intergenic not near genes chr2R 10980195 intergenic not near genes chr2R_24_10975001 chr2R_10975001 RAL-361 1008 chr2R 11009778 11009839 chr2R 11019002 11019063 roo 23 9222 11.5 11.0 11.2 1.9 9285 chr2R 11009778 intron luna - chr2R 11014420 intron luna - chr2R 11019063 intron luna - chr2R_23_11010001 chr2R_11010001 RAL-361 1009 chr2R 11019844 11019903 chr2R 11024951 11025019 jockey 21 5112 7.0 9.0 8.0 2.3 5175 chr2R 11019844 intron luna - chr2R 11022432 intron luna - chr2R 11025019 intron luna - chr2R_21_11020001 chr2R_11020001 RAL-361 1010 chr2R 11043692 11043736 chr2R 11043822 11043865 20 127 10.0 5.0 7.5 2.4 173 chr2R 11043692 intron luna - chr2R 11043778 intron luna - chr2R 11043865 intron luna - chr2R_20_11040001 chr2R_11040001 RAL-361 1011 chr2R 11066459 11066467 chr2R 11066547 11066574 5 112 4.0 11.0 7.5 0.6 115 chr2R 11066459 intron luna - chr2R 11066516 intron luna - chr2R 11066574 intron luna - chr2R_5_11065001 chr2R_11065001 RAL-361 1012 chr2R 11081272 11081326 chr2R 11081410 11081464 24 136 9.5 12.0 10.8 2.0 192 chr2R 11081272 intron luna - chr2R 11081368 intron luna - chr2R 11081464 intron luna - chr2R_24_11080001 chr2R_11080001 RAL-361 1013 chr2R 11102820 11102899 chr2R 11102952 11103031 23 131 8.5 0.0 4.2 4.4 211 chr2R 11102820 intron luna - chr2R 11102926 intron luna - chr2R 11103031 intron luna - chr2R_23_11100001 chr2R_11100001 RAL-361 1014 chr2R 11179223 11179274 chr2R 11179359 11179410 17 136 16.0 14.5 15.2 1.0 187 chr2R 11179223 intron shn + chr2R 11179316 intron shn + chr2R 11179410 intron shn + chr2R_17_11175001 chr2R_11175001 RAL-361 1015 chr2R 11184646 11184660 chr2R 11184773 11184783 5 126 24.0 15.5 19.8 0.2 137 chr2R 11184646 intron shn + chr2R 11184714 intron shn + chr2R 11184783 intron shn + chr2R_5_11180001 chr2R_11180001 RAL-361 1016 chr2R 11184663 11184685 chr2R 11184770 11184812 12 124 18.5 16.0 17.2 0.7 149 chr2R 11184663 intron shn + chr2R 11184738 intron shn + chr2R 11184812 intron shn + chr2R_12_11180001 chr2R_11180001 RAL-361 1017 chr2R 11194750 11194784 chr2R 11194908 11194942 13 158 10.0 17.0 13.5 0.9 192 chr2R 11194750 intron shn + chr2R 11194846 intron shn + chr2R 11194942 intron shn + chr2R_13_11190001 chr2R_11190001 RAL-361 1018 chr2R 11207775 11207839 chr2R 11208019 11208082 BS 20 244 9.5 19.5 14.5 1.3 307 chr2R 11207775 intron shn + chr2R 11207928 intron shn + chr2R 11208082 intron shn + chr2R_20_11205001 chr2R_11205001 RAL-361 1019 chr2R 11263828 11263838 chr2R 11263994 11264004 8 166 0.0 22.5 11.2 0.7 176 chr2R 11263828 intergenic not near genes chr2R 11263916 intergenic not near genes chr2R 11264004 intergenic not near genes chr2R_8_11260001 chr2R_11260001 RAL-361 1020 chr2R 11284248 11284319 chr2R 11284391 11284461 28 142 5.0 11.0 8.0 3.1 213 chr2R 11284248 intergenic CG13220 +,CG9062 - chr2R 11284354 5` UTR CG13220 + chr2R 11284461 5` UTR CG13220 + chr2R_28_11280001 chr2R_11280001 RAL-361 1021 chr2R 11297581 11297603 chr2R 11301952 11301974 flea 7 4371 17.0 13.0 15.0 0.4 4393 chr2R 11297581 intergenic CG42336 - chr2R 11299778 intergenic not near genes chr2R 11301974 5` UTR CG7741 + chr2R_7_11295001 chr2R_11295001 RAL-361 1022 chr2R 11297612 11297616 chr2R 11301942 11301985 flea 5 4362 13.0 10.5 11.8 0.4 4373 chr2R 11297612 intergenic CG42336 - chr2R 11299798 intergenic not near genes chr2R 11301985 5` UTR CG7741 + chr2R_5_11295001 chr2R_11295001 RAL-361 1023 chr2R 11297617 11297638 chr2R 11301937 11302001 flea 12 4362 8.5 9.0 8.8 1.2 4384 chr2R 11297617 intergenic CG42336 - chr2R 11299809 intergenic not near genes chr2R 11302001 5` UTR CG7741 + chr2R_12_11295001 chr2R_11295001 RAL-361 1024 chr2R 11344108 11344159 chr2R 11344254 11344305 12 146 0.0 8.5 4.2 2.3 197 chr2R 11344108 intergenic alphaTry - chr2R 11344206 intergenic alphaTry - chr2R 11344305 3` UTR alphaTry - chr2R_12_11340001 chr2R_11340001 RAL-361 1025 chr2R 11367660 11367662 chr2R 12699802 12699807 4 1332144 6.5 11.5 9.0 0.4 1332147 chr2R 11367660 intron CG13204 + chr2R 12033734 intergenic pds5 +,CG8321 + chr2R 12699807 intergenic wuc + chr2R_4_12030001 chr2R_12030001 RAL-361 1026 chr2R 11367979 11368035 chr2R 11368105 11368161 19 126 7.0 5.0 6.0 2.7 182 chr2R 11367979 intron CG13204 + chr2R 11368070 intron CG13204 + chr2R 11368161 intron CG13204 + chr2R_19_11365001 chr2R_11365001 RAL-361 1027 chr2R 11377214 11377284 chr2R 11377342 11377413 20 129 0.0 8.5 4.2 3.8 199 chr2R 11377214 3` UTR Tsp47F - chr2R 11377314 3` UTR Tsp47F - chr2R 11377413 3` UTR Tsp47F - chr2R_20_11375001 chr2R_11375001 RAL-361 1028 chr2R 11404754 11404800 chr2R 11404890 11404936 10 136 8.0 11.0 9.5 1.0 182 chr2R 11404754 intergenic not near genes chr2R 11404845 intergenic not near genes chr2R 11404936 intergenic not near genes chr2R_10_11400001 chr2R_11400001 RAL-361 1029 chr2R 11415382 11415403 chr2R 11415508 11415529 9 125 21.0 1.5 11.2 0.7 147 chr2R 11415382 intron,3` UTR Drip -,CG7763 + chr2R 11415456 intron,3` UTR Drip -,CG7763 + chr2R 11415529 intron Drip - chr2R_9_11415001 chr2R_11415001 RAL-361 1030 chr2R 11415405 11415425 chr2R 11415506 11415551 14 124 15.0 2.5 8.8 1.4 146 chr2R 11415405 intron,3` UTR Drip -,CG7763 + chr2R 11415478 intron Drip - chr2R 11415551 intron Drip - chr2R_14_11415001 chr2R_11415001 RAL-361 1031 chr2R 11415445 11415545 chr2R 11418667 11418744 opus 35 3203 0.0 12.5 6.2 4.9 3299 chr2R 11415445 intron,3` UTR Drip -,CG7763 + chr2R 11417094 intron Drip - chr2R 11418744 intron Drip - chr2R_35_11415001 chr2R_11415001 RAL-361 1032 chr2R 11421625 11421686 chr2R 11421755 11421816 27 130 11.5 15.5 13.5 1.9 191 chr2R 11421625 intron Drip - chr2R 11421720 intron Drip - chr2R 11421816 intron Drip - chr2R_27_11420001 chr2R_11420001 RAL-361 1033 chr2R 11472615 11472675 chr2R 11473862 11473922 pogo 33 1246 12.5 13.0 12.8 2.4 1307 chr2R 11472615 intergenic not near genes chr2R 11473268 intergenic not near genes chr2R 11473922 intergenic not near genes chr2R_33_11470001 chr2R_11470001 RAL-361 1034 chr2R 11494554 11494614 chr2R 11494693 11494753 22 137 12.0 7.5 9.8 2.0 199 chr2R 11494554 intron inv + chr2R 11494654 intron inv + chr2R 11494753 intron inv + chr2R_22_11490001 chr2R_11490001 RAL-361 1035 chr2R 11498789 11498797 chr2R 11498962 11498969 4 173 22.5 20.0 21.2 0.2 180 chr2R 11498789 intron inv + chr2R 11498879 intron inv + chr2R 11498969 intron inv + chr2R_4_11495001 chr2R_11495001 RAL-361 1036 chr2R 11554520 11554550 chr2R 11554647 11554677 12 127 4.5 7.5 6.0 1.7 157 chr2R 11554520 intergenic not near genes chr2R 11554598 intergenic not near genes chr2R 11554677 intergenic not near genes chr2R_12_11550001 chr2R_11550001 RAL-361 1037 chr2R 11575027 11575037 chr2R 11575172 11575182 4 145 0.0 13.0 6.5 0.5 155 chr2R 11575027 intergenic not near genes chr2R 11575104 intergenic not near genes chr2R 11575182 intergenic not near genes chr2R_4_11575001 chr2R_11575001 RAL-361 1038 chr2R 11631325 11631413 chr2R 11631476 11631543 17 132 0.0 10.0 5.0 2.8 218 chr2R 11631325 intron CG9005 - chr2R 11631434 intron CG9005 - chr2R 11631543 intron CG9005 - chr2R_17_11630001 chr2R_11630001 RAL-361 1039 chr2R 11677829 11677854 chr2R 11677957 11677982 15 126 18.5 10.5 14.5 1.0 153 chr2R 11677829 intron,exon Roc2 -,Tret1-2 + chr2R 11677906 intron,3` UTR Roc2 -,Tret1-2 + chr2R 11677982 intron,3` UTR Roc2 -,Tret1-2 + chr2R_15_11675001 chr2R_11675001 RAL-361 1040 chr2R 11677856 11677897 chr2R 11677952 11678025 29 123 10.5 9.5 10.0 2.6 169 chr2R 11677856 intron,exon Roc2 -,Tret1-2 + chr2R 11677940 intron,3` UTR Roc2 -,Tret1-2 + chr2R 11678025 intron Roc2 - chr2R_29_11675001 chr2R_11675001 RAL-361 1041 chr2R 11817918 11817975 chr2R 11818058 11818123 25 146 12.5 7.0 9.8 2.3 205 chr2R 11817918 intergenic not near genes chr2R 11818020 intergenic not near genes chr2R 11818123 intergenic not near genes chr2R_25_11815001 chr2R_11815001 RAL-361 1042 chr2R 11822929 11823005 chr2R 11823054 11823120 37 125 0.0 6.0 3.0 9.2 191 chr2R 11822929 intergenic not near genes chr2R 11823024 intergenic not near genes chr2R 11823120 intergenic not near genes chr2R_37_11820001 chr2R_11820001 RAL-361 1043 chr2R 11928671 11928711 chr2R 11928799 11928839 5 128 0.0 14.0 7.0 0.6 168 chr2R 11928671 intergenic not near genes chr2R 11928755 intergenic CR44312 - chr2R 11928839 intergenic CR44312 - chr2R_5_11925001 chr2R_11925001 RAL-361 1044 chr2R 11951298 11951357 chr2R 11951425 11951484 31 127 11.5 4.5 8.0 3.4 186 chr2R 11951298 intron CG13188 + chr2R 11951391 intron CG13188 + chr2R 11951484 intron CG13188 + chr2R_31_11950001 chr2R_11950001 RAL-361 1045 chr2R 12093905 12093979 chr2R 12094068 12094143 27 163 8.5 9.5 9.0 2.7 238 chr2R 12093905 intron jeb - chr2R 12094024 intron jeb - chr2R 12094143 intron jeb - chr2R_27_12090001 chr2R_12090001 RAL-361 1046 chr2R 12103225 12103281 chr2R 12103543 12103599 15 315 6.5 4.0 5.2 2.4 374 chr2R 12103225 intron jeb - chr2R 12103412 intron jeb - chr2R 12103599 intron jeb - chr2R_15_12100001 chr2R_12100001 RAL-361 1047 chr2R 12128663 12128733 chr2R 12129001 12129035 26 331 7.5 3.5 5.5 4.0 372 chr2R 12128663 intergenic not near genes chr2R 12128849 intergenic not near genes chr2R 12129035 intergenic not near genes chr2R_26_12125001 chr2R_12125001 RAL-361 1048 chr2R 12185958 12186030 chr2R 12186103 12186156 32 144 8.5 4.5 6.5 4.3 198 chr2R 12185958 intron Cyp6g1 + chr2R 12186057 intron Cyp6g1 + chr2R 12186156 intron Cyp6g1 + chr2R_32_12185001 chr2R_12185001 RAL-361 1049 chr2R 12189353 12189401 chr2R 12189596 12189644 16 237 128.5 126.5 127.5 0.1 291 chr2R 12189353 exon Cyp6g2 - chr2R 12189498 exon Cyp6g2 - chr2R 12189644 exon Cyp6g2 - chr2R_16_12185001 chr2R_12185001 RAL-361 1050 chr2R 12187481 12187498 chr2R 12190047 12190065 16 2567 91.0 162.0 126.5 0.1 2584 chr2R 12187481 exon Cyp6g1 + chr2R 12188773 exon Cyp6g2 - chr2R 12190065 exon Cyp6g2 - chr2R_16_12185001 chr2R_12185001 RAL-361 1051 chr2R 12187479 12187486 chr2R 12190066 12190083 28 2574 82.5 149.0 115.8 0.2 2604 chr2R 12187479 exon Cyp6g1 + chr2R 12188781 exon Cyp6g2 - chr2R 12190083 exon Cyp6g2 - chr2R_28_12185001 chr2R_12185001 RAL-361 1052 chr2R 12187475 12187555 chr2R 12190084 12190121 54 2580 149.0 134.0 141.5 0.4 2646 chr2R 12187475 exon Cyp6g1 + chr2R 12188798 exon Cyp6g2 - chr2R 12190121 exon Cyp6g2 - chr2R_54_12185001 chr2R_12185001 RAL-361 1053 chr2R 12213849 12213862 chr2R 12213978 12213991 4 129 3.5 10.0 6.8 0.5 142 chr2R 12213849 intergenic CG13171 + chr2R 12213920 intergenic CG13171 + chr2R 12213991 intergenic CG13171 + chr2R_4_12210001 chr2R_12210001 RAL-361 1054 chr2R 12217527 12217596 chr2R 12217658 12217727 31 125 8.0 10.5 9.2 3.0 200 chr2R 12217527 intergenic not near genes chr2R 12217627 intergenic not near genes chr2R 12217727 intergenic not near genes chr2R_31_12215001 chr2R_12215001 RAL-361 1055 chr2R 12240732 12240774 chr2R 12240858 12240909 4 133 3.0 0.0 1.5 1.6 177 chr2R 12240732 exon CG13170 + chr2R 12240820 intergenic CG13170 +,CG43315 + chr2R 12240909 intergenic CG13170 +,CG43315 + chr2R_4_12240001 chr2R_12240001 RAL-361 1056 chr2R 12285334 12285369 chr2R 12285481 12285516 20 147 16.5 0.0 8.2 2.2 182 chr2R 12285334 intron CG42700 + chr2R 12285425 intron CG42700 + chr2R 12285516 intron CG42700 + chr2R_20_12285001 chr2R_12285001 RAL-361 1057 chr2R 12336669 12336697 chr2R 12336797 12336827 10 130 13.0 7.5 10.2 0.9 158 chr2R 12336669 intergenic CG34021 +,CG8490 + chr2R 12336748 intergenic CG34021 + chr2R 12336827 intergenic CG34021 + chr2R_10_12335001 chr2R_12335001 RAL-361 1058 chr2R 12336699 12336708 chr2R 12336796 12336801 8 111 12.0 7.0 9.5 0.8 102 chr2R 12336699 intergenic CG34021 +,CG8490 + chr2R 12336750 intergenic CG34021 + chr2R 12336801 intergenic CG34021 + chr2R_8_12335001 chr2R_12335001 RAL-361 1059 chr2R 12363338 12363418 chr2R 12363820 12363892 25 480 7.0 0.5 3.8 5.2 554 chr2R 12363338 intergenic CG30043 + chr2R 12363615 intergenic CG30043 + chr2R 12363892 intergenic not near genes chr2R_25_12360001 chr2R_12360001 RAL-361 1060 chr2R 12413118 12413127 chr2R 12413244 12413253 5 126 7.5 0.0 3.8 1.0 135 chr2R 12413118 intergenic not near genes chr2R 12413186 intergenic not near genes chr2R 12413253 intergenic not near genes chr2R_5_12410001 chr2R_12410001 RAL-361 1061 chr2R 12481141 12481160 chr2R 12482947 12483014 roo 10 1845 5.0 7.5 6.2 1.4 1873 chr2R 12481141 exon Dh44-R2 + chr2R 12482078 intron Dh44-R2 + chr2R 12483014 intron Dh44-R2 + chr2R_10_12480001 chr2R_12480001 RAL-361 1062 chr2R 12501653 12501719 chr2R 12503864 12503894 Rt1c 16 2202 7.5 7.0 7.2 2.0 2241 chr2R 12501653 intron fdl - chr2R 12502774 intron fdl - chr2R 12503894 intron fdl - chr2R_16_12500001 chr2R_12500001 RAL-361 1063 chr2R 12565518 12565597 chr2R 12565948 12565996 15 401 0.0 3.5 1.8 5.4 478 chr2R 12565518 intergenic not near genes chr2R 12565757 intergenic Cyp301a1 + chr2R 12565996 intergenic Cyp301a1 + chr2R_15_12565001 chr2R_12565001 RAL-361 1064 chr2R 12625963 12626024 chr2R 12626154 12626209 16 191 0.0 11.5 5.8 2.4 246 chr2R 12625963 5` UTR CG17760 + chr2R 12626086 5` UTR CG17760 + chr2R 12626209 intron CG17760 + chr2R_16_12625001 chr2R_12625001 RAL-361 1065 chr2R 12627420 12627499 chr2R 12627573 12627642 14 148 0.0 5.0 2.5 4.0 222 chr2R 12627420 intron CG17760 + chr2R 12627531 intron CG17760 + chr2R 12627642 exon CG17760 + chr2R_14_12625001 chr2R_12625001 RAL-361 1066 chr2R 12671399 12671413 chr2R 12671556 12671570 4 157 14.5 11.0 12.8 0.3 171 chr2R 12671399 intron CG42708 - chr2R 12671484 intron CG42708 - chr2R 12671570 exon CG42708 - chr2R_4_12670001 chr2R_12670001 RAL-361 1067 chr2R 12693918 12693942 chr2R 12694045 12694069 14 127 9.0 11.0 10.0 1.3 151 chr2R 12693918 intergenic not near genes chr2R 12693994 intergenic not near genes chr2R 12694069 intergenic not near genes chr2R_14_12690001 chr2R_12690001 RAL-361 1068 chr2R 12696560 12696566 chr2R 12696689 12696695 4 129 5.0 0.0 2.5 1.1 135 chr2R 12696560 intergenic not near genes chr2R 12696628 intergenic not near genes chr2R 12696695 intergenic not near genes chr2R_4_12695001 chr2R_12695001 RAL-361 1069 chr2R 12707474 12707548 chr2R 12715890 12715964 roo 35 8416 9.0 9.0 9.0 3.5 8490 chr2R 12707474 intron CG42663 + chr2R 12711719 intron CG42663 + chr2R 12715964 intron CG42663 + chr2R_35_12710001 chr2R_12710001 RAL-361 1070 chr2R 12723376 12723422 chr2R 12726114 12726171 22 2744 52.0 68.5 60.2 0.4 2795 chr2R 12723376 intron CG42663 + chr2R 12724774 intron CG42663 + chr2R 12726171 intron CG42663 + chr2R_22_12720001 chr2R_12720001 RAL-361 1071 chr2R 12728854 12728900 chr2R 12728982 12729048 8 146 0.0 9.0 4.5 1.5 194 chr2R 12728854 intron CG42663 + chr2R 12728951 intron CG42663 + chr2R 12729048 intron CG42663 + chr2R_8_12725001 chr2R_12725001 RAL-361 1072 chr2R 12771280 12771342 chr2R 12771439 12771501 32 158 11.0 9.0 10.0 2.9 221 chr2R 12771280 intergenic not near genes chr2R 12771390 intergenic not near genes chr2R 12771501 intergenic not near genes chr2R_32_12770001 chr2R_12770001 RAL-361 1073 chr2R 12774201 12774274 chr2R 12774336 12774423 21 141 7.5 0.0 3.8 4.4 222 chr2R 12774201 intergenic not near genes chr2R 12774312 intergenic not near genes chr2R 12774423 intergenic not near genes chr2R_21_12770001 chr2R_12770001 RAL-361 1074 chr2R 12777762 12777797 chr2R 12777903 12777940 10 141 7.0 7.0 7.0 1.2 178 chr2R 12777762 5` UTR CR45266 + chr2R 12777851 5` UTR CR45266 + chr2R 12777940 5` UTR CR45266 + chr2R_10_12775001 chr2R_12775001 RAL-361 1075 chr2R 12789251 12789263 chr2R 12797663 12797676 roo 5 8413 19.5 2.5 11.0 0.4 8425 chr2R 12789251 intron,3` UTR sca +,CR45137 - chr2R 12793464 intron,intron sca +,CR45137 - chr2R 12797676 intron,3` UTR sca +,CR45137 - chr2R_5_12790001 chr2R_12790001 RAL-361 1076 chr2R 12789268 12789323 chr2R 12797660 12797715 roo 12 8402 10.0 2.5 6.2 1.7 8447 chr2R 12789268 intron,3` UTR sca +,CR45137 - chr2R 12793492 intron,intron sca +,CR45137 - chr2R 12797715 intron,3` UTR sca +,CR45137 - chr2R_12_12790001 chr2R_12790001 RAL-361 1077 chr2R 12819108 12819176 chr2R 12819282 12819346 9 171 4.5 0.0 2.2 2.8 238 chr2R 12819108 intergenic not near genes chr2R 12819227 intergenic not near genes chr2R 12819346 intergenic not near genes chr2R_9_12815001 chr2R_12815001 RAL-361 1078 chr2R 12819401 12819465 chr2R 12824520 12824584 jockey 21 5118 9.0 4.0 6.5 2.8 5183 chr2R 12819401 intergenic not near genes chr2R 12821992 intergenic not near genes chr2R 12824584 intergenic not near genes chr2R_21_12820001 chr2R_12820001 RAL-361 1079 chr2R 12897414 12897484 chr2R 12897555 12897625 11 141 0.0 0.0 0.0 11.0 211 chr2R 12897414 intron vg + chr2R 12897520 intron vg + chr2R 12897625 intron vg + chr2R_11_12895001 chr2R_12895001 RAL-361 1080 chr2R 12908457 12908494 chr2R 12908598 12908634 15 140 0.0 7.0 3.5 3.3 177 chr2R 12908457 intergenic not near genes chr2R 12908546 intergenic not near genes chr2R 12908634 intergenic not near genes chr2R_15_12905001 chr2R_12905001 RAL-361 1081 chr2R 12973386 12973449 chr2R 12973523 12973575 27 136 8.5 10.5 9.5 2.6 189 chr2R 12973386 intron Psc - chr2R 12973480 intron Psc - chr2R 12973575 intron Psc - chr2R_27_12970001 chr2R_12970001 RAL-361 1082 chr2R 13034615 13034693 chr2R 13034774 13034852 11 159 0.0 7.5 3.8 2.3 237 chr2R 13034615 intergenic not near genes chr2R 13034734 intergenic not near genes chr2R 13034852 intergenic not near genes chr2R_11_13030001 chr2R_13030001 RAL-361 1083 chr2R 13043015 13043038 chr2R 13043145 13043168 14 130 0.0 7.0 3.5 3.1 153 chr2R 13043015 intergenic not near genes chr2R 13043092 intergenic not near genes chr2R 13043168 intergenic not near genes chr2R_14_13040001 chr2R_13040001 RAL-361 1084 chr2R 13136799 13136860 chr2R 13141647 13141708 Doc 25 4847 13.0 11.0 12.0 1.9 4909 chr2R 13136799 exon Cap-G + chr2R 13139254 intron Cap-G + chr2R 13141708 intron Cap-G + chr2R_25_13135001 chr2R_13135001 RAL-361 1085 chr2R 13194801 13194835 chr2R 13194947 13194952 7 134 16.5 11.5 14.0 0.5 151 chr2R 13194801 intergenic not near genes chr2R 13194876 intergenic not near genes chr2R 13194952 intergenic not near genes chr2R_7_13190001 chr2R_13190001 RAL-361 1086 chr2R 13220492 13220547 chr2R 13220620 13220694 22 135 0.5 8.0 4.2 4.2 202 chr2R 13220492 intron CG17059 + chr2R 13220593 intron CG17059 + chr2R 13220694 intron CG17059 + chr2R_22_13220001 chr2R_13220001 RAL-361 1087 chr2R 13376604 13376638 chr2R 13376764 13376798 12 160 1.5 10.0 5.8 1.8 194 chr2R 13376604 intron CG10814 - chr2R 13376701 intron CG10814 - chr2R 13376798 exon CG10814 - chr2R_12_13375001 chr2R_13375001 RAL-361 1088 chr2R 13403872 13403937 chr2R 13404007 13404071 26 135 6.5 0.0 3.2 6.2 199 chr2R 13403872 intergenic not near genes chr2R 13403972 intergenic not near genes chr2R 13404071 intergenic not near genes chr2R_26_13400001 chr2R_13400001 RAL-361 1089 chr2R 13431442 13431514 chr2R 13431571 13431643 28 129 11.5 7.0 9.2 2.7 201 chr2R 13431442 intron CG42321 - chr2R 13431542 intron CG42321 - chr2R 13431643 intron CG42321 - chr2R_28_13430001 chr2R_13430001 RAL-361 1090 chr2R 13468845 13468876 chr2R 13468972 13469003 6 127 11.0 0.5 5.8 0.9 158 chr2R 13468845 intron arr - chr2R 13468924 intron arr - chr2R 13469003 intron arr - chr2R_6_13465001 chr2R_13465001 RAL-361 1091 chr2R 13521246 13521308 chr2R 13521364 13521431 26 125 6.5 9.5 8.0 2.9 185 chr2R 13521246 intron Vmat - chr2R 13521338 intron Vmat - chr2R 13521431 intron Vmat - chr2R_26_13520001 chr2R_13520001 RAL-361 1092 chr2R 13540152 13540161 chr2R 13540284 13540293 7 132 8.0 0.0 4.0 1.4 141 chr2R 13540152 intron CG6145 - chr2R 13540222 intron CG6145 - chr2R 13540293 intron CG6145 - chr2R_7_13540001 chr2R_13540001 RAL-361 1093 chr2R 13554706 13554766 chr2R 13554841 13554901 7 135 0.0 11.0 5.5 1.1 195 chr2R 13554706 intron Roe1 + chr2R 13554804 intron Roe1 + chr2R 13554901 intron Roe1 + chr2R_7_13550001 chr2R_13550001 RAL-361 1094 chr2R 13568137 13568193 chr2R 13568259 13568323 16 130 6.5 4.0 5.2 2.6 186 chr2R 13568137 intergenic not near genes chr2R 13568230 intergenic not near genes chr2R 13568323 intergenic not near genes chr2R_16_13565001 chr2R_13565001 RAL-361 1095 chr2R 13601491 13601532 chr2R 13601618 13601624 5 113 10.0 10.0 10.0 0.5 133 chr2R 13601491 intergenic CG43058 - chr2R 13601558 intergenic CG43058 - chr2R 13601624 intergenic not near genes chr2R_5_13600001 chr2R_13600001 RAL-361 1096 chr2R 13622162 13622193 chr2R 13622290 13622321 14 128 7.5 15.0 11.2 1.1 159 chr2R 13622162 intergenic not near genes chr2R 13622242 intergenic not near genes chr2R 13622321 intergenic not near genes chr2R_14_13620001 chr2R_13620001 RAL-361 1097 chr2R 13632273 13632292 chr2R 13632411 13632430 10 138 18.0 11.0 14.5 0.6 157 chr2R 13632273 intron fas + chr2R 13632352 intron fas + chr2R 13632430 intron fas + chr2R_10_13630001 chr2R_13630001 RAL-361 1098 chr2R 13652660 13652739 chr2R 13652789 13652868 28 125 6.5 7.5 7.0 3.5 208 chr2R 13652660 intron fas + chr2R 13652764 intron fas + chr2R 13652868 intron fas + chr2R_28_13650001 chr2R_13650001 RAL-361 1099 chr2R 13677781 13677853 chr2R 13677902 13677983 6 126 3.5 5.0 4.2 1.2 202 chr2R 13677781 intron fas + chr2R 13677882 intron fas + chr2R 13677983 intron fas + chr2R_6_13675001 chr2R_13675001 RAL-361 1100 chr2R 13709797 13709853 chr2R 13709940 13709975 24 142 5.0 0.0 2.5 6.9 178 chr2R 13709797 intron fas + chr2R 13709886 intron fas + chr2R 13709975 intron fas + chr2R_24_13705001 chr2R_13705001 RAL-361 1101 chr2R 13721164 13721229 chr2R 13721286 13721322 20 123 11.0 8.0 9.5 1.9 158 chr2R 13721164 intron fas + chr2R 13721243 intron fas + chr2R 13721322 intron fas + chr2R_20_13720001 chr2R_13720001 RAL-361 1102 chr2R 13727802 13727841 chr2R 13727938 13727977 13 134 9.5 11.5 10.5 1.1 175 chr2R 13727802 intron fas + chr2R 13727890 intron fas + chr2R 13727977 intron fas + chr2R_13_13725001 chr2R_13725001 RAL-361 1103 chr2R 13728079 13728141 chr2R 13735789 13735851 opus 23 7710 2.5 8.5 5.5 3.5 7772 chr2R 13728079 intron fas + chr2R 13731965 intron fas + chr2R 13735851 intron fas + chr2R_23_13730001 chr2R_13730001 RAL-361 1104 chr2R 13790277 13790320 chr2R 13790403 13790411 8 121 12.0 2.0 7.0 1.0 134 chr2R 13790277 intergenic not near genes chr2R 13790344 intergenic not near genes chr2R 13790411 intergenic not near genes chr2R_8_13790001 chr2R_13790001 RAL-361 1105 chr2R 13817613 13817690 chr2R 13817741 13817822 18 130 8.0 0.5 4.2 3.5 209 chr2R 13817613 intron stj + chr2R 13817718 intron stj + chr2R 13817822 intron stj + chr2R_18_13815001 chr2R_13815001 RAL-361 1106 chr2R 13905565 13905619 chr2R 13907597 13907631 Rt1a 23 2024 11.5 7.5 9.5 2.2 2066 chr2R 13905565 intron shot - chr2R 13906598 intron shot - chr2R 13907631 intron shot - chr2R_23_13905001 chr2R_13905001 RAL-361 1107 chr2R 13925854 13925892 chr2R 13926040 13926078 13 186 15.5 12.0 13.8 0.9 224 chr2R 13925854 intron shot - chr2R 13925966 intron shot - chr2R 13926078 intron shot - chr2R_13_13925001 chr2R_13925001 RAL-361 1108 chr2R 13995231 13995233 chr2R 13995362 13995370 4 136 1.0 23.0 12.0 0.3 139 chr2R 13995231 intron mam + chr2R 13995300 intron mam + chr2R 13995370 intron mam + chr2R_4_13995001 chr2R_13995001 RAL-361 1109 chr2R 14018128 14018179 chr2R 14018262 14018313 24 134 7.0 9.0 8.0 2.7 185 chr2R 14018128 intron mam + chr2R 14018220 intron mam + chr2R 14018313 intron mam + chr2R_24_14015001 chr2R_14015001 RAL-361 1110 chr2R 14051401 14051409 chr2R 14051521 14051537 4 126 11.5 11.0 11.2 0.3 136 chr2R 14051401 intron mam + chr2R 14051469 intron mam + chr2R 14051537 intron mam + chr2R_4_14050001 chr2R_14050001 RAL-361 1111 chr2R 14078003 14078089 chr2R 14078152 14078220 16 146 0.0 10.5 5.2 2.6 217 chr2R 14078003 intron Prosap - chr2R 14078112 intron Prosap - chr2R 14078220 intron Prosap - chr2R_16_14075001 chr2R_14075001 RAL-361 1112 chr2R 14175941 14176016 chr2R 14176296 14176376 24 356 4.0 9.5 6.8 3.1 435 chr2R 14175941 intron cg + chr2R 14176158 intron cg + chr2R 14176376 intron cg + chr2R_24_14175001 chr2R_14175001 RAL-361 1113 chr2R 14283416 14283431 chr2R 14283916 14283951 4 510 10.0 5.5 7.8 0.5 535 chr2R 14283416 intron Ih + chr2R 14283684 intron Ih + chr2R 14283951 intron Ih + chr2R_4_14280001 chr2R_14280001 RAL-361 1114 chr2R 14284995 14285044 chr2R 14285140 14285189 17 145 8.0 7.5 7.8 1.9 194 chr2R 14284995 intron Ih + chr2R 14285092 intron Ih + chr2R 14285189 intron Ih + chr2R_17_14285001 chr2R_14285001 RAL-361 1115 chr2R 14357507 14357575 chr2R 14357647 14357715 27 140 6.5 5.0 5.8 4.0 208 chr2R 14357507 intergenic CG8617 -,Arc1 - chr2R 14357611 intergenic Arc1 -,CG8617 - chr2R 14357715 intergenic Arc1 -,CG8617 - chr2R_27_14355001 chr2R_14355001 RAL-361 1116 chr2R 14364448 14364456 chr2R 14364576 14364593 4 136 19.5 10.5 15.0 0.2 145 chr2R 14364448 exon Tfb1 + chr2R 14364520 exon Tfb1 + chr2R 14364593 exon Tfb1 + chr2R_4_14360001 chr2R_14360001 RAL-361 1117 chr2R 14364459 14364496 chr2R 14364566 14364638 23 128 13.5 7.5 10.5 2.0 179 chr2R 14364459 exon Tfb1 + chr2R 14364548 exon Tfb1 + chr2R 14364638 exon Tfb1 + chr2R_23_14360001 chr2R_14360001 RAL-361 1118 chr2R 14378941 14379003 chr2R 14379455 14379517 24 513 10.0 0.0 5.0 4.0 576 chr2R 14378941 intron Dh44-R1 + chr2R 14379229 intron Dh44-R1 + chr2R 14379517 intron Dh44-R1 + chr2R_24_14375001 chr2R_14375001 RAL-361 1119 chr2R 14382498 14382535 chr2R 14382624 14382661 11 126 6.0 10.0 8.0 1.2 163 chr2R 14382498 intron Dh44-R1 + chr2R 14382580 intron Dh44-R1 + chr2R 14382661 intron Dh44-R1 + chr2R_11_14380001 chr2R_14380001 RAL-361 1120 chr2R 14393823 14393895 chr2R 14393958 14394024 29 133 9.5 11.5 10.5 2.5 201 chr2R 14393823 intergenic not near genes chr2R 14393924 intergenic not near genes chr2R 14394024 intergenic not near genes chr2R_29_14390001 chr2R_14390001 RAL-361 1121 chr2R 14394185 14394190 chr2R 14399024 14399029 Doc 5 4839 23.0 8.5 15.8 0.3 4844 chr2R 14394185 intergenic not near genes chr2R 14396607 intergenic not near genes chr2R 14399029 intergenic not near genes chr2R_5_14395001 chr2R_14395001 RAL-361 1122 chr2R 14426399 14426427 chr2R 14426536 14426564 9 137 12.5 0.0 6.2 1.2 165 chr2R 14426399 intergenic not near genes chr2R 14426482 intergenic not near genes chr2R 14426564 intergenic not near genes chr2R_9_14425001 chr2R_14425001 RAL-361 1123 chr2R 14457434 14457442 chr2R 14457560 14457568 6 126 0.0 5.0 2.5 1.7 134 chr2R 14457434 intron Oaz + chr2R 14457501 intron Oaz + chr2R 14457568 intron Oaz + chr2R_6_14455001 chr2R_14455001 RAL-361 1124 chr2R 14457444 14457449 chr2R 14457554 14457575 7 124 0.0 5.0 2.5 2.0 131 chr2R 14457444 intron Oaz + chr2R 14457510 intron Oaz + chr2R 14457575 intron Oaz + chr2R_7_14455001 chr2R_14455001 RAL-361 1125 chr2R 14467248 14467320 chr2R 14476449 14476470 roo 30 9198 8.0 8.0 8.0 3.3 9222 chr2R 14467248 intergenic not near genes chr2R 14471859 intergenic not near genes chr2R 14476470 5` UTR CR44462 + chr2R_30_14470001 chr2R_14470001 RAL-361 1126 chr2R 14497358 14497418 chr2R 14498571 14498616 1360 16 1212 0.0 12.0 6.0 2.3 1258 chr2R 14497358 3` UTR Cpsf160 - chr2R 14497987 intron Cpsf160 - chr2R 14498616 3` UTR Cpsf160 - chr2R_16_14495001 chr2R_14495001 RAL-361 1127 chr2R 14514443 14514499 chr2R 14514586 14514642 24 143 11.5 10.5 11.0 2.0 199 chr2R 14514443 intron,exon Cpr51A -,CG30197 + chr2R 14514542 intron,intron Cpr51A -,CG30197 + chr2R 14514642 intron,intron Cpr51A -,CG30197 + chr2R_24_14510001 chr2R_14510001 RAL-361 1128 chr2R 14533729 14533785 chr2R 14533861 14533916 15 130 4.5 8.5 6.5 2.0 187 chr2R 14533729 intron ttv + chr2R 14533822 intron ttv + chr2R 14533916 intron ttv + chr2R_15_14530001 chr2R_14530001 RAL-361 1129 chr2R 14548684 14548758 chr2R 14548810 14548843 14 114 10.0 9.5 9.8 1.3 159 chr2R 14548684 intron ttv + chr2R 14548764 intron ttv + chr2R 14548843 intron ttv + chr2R_14_14545001 chr2R_14545001 RAL-361 1130 chr2R 14565521 14565588 chr2R 14565648 14565700 37 126 10.0 15.0 12.5 2.7 179 chr2R 14565521 intron ttv + chr2R 14565610 intron ttv + chr2R 14565700 intron ttv + chr2R_37_14565001 chr2R_14565001 RAL-361 1131 chr2R 14566376 14566432 chr2R 14566505 14566561 25 127 13.5 11.5 12.5 1.9 185 chr2R 14566376 intron ttv + chr2R 14566468 intron ttv + chr2R 14566561 intron ttv + chr2R_25_14565001 chr2R_14565001 RAL-361 1132 chr2R 14610206 14610217 chr2R 14610348 14610359 6 142 18.0 9.0 13.5 0.4 153 chr2R 14610206 exon Su(var)2-HP2 - chr2R 14610282 exon Su(var)2-HP2 - chr2R 14610359 exon Su(var)2-HP2 - chr2R_6_14610001 chr2R_14610001 RAL-361 1133 chr2R 14610218 14610273 chr2R 14610340 14610415 25 138 6.0 7.0 6.5 3.3 197 chr2R 14610218 exon Su(var)2-HP2 - chr2R 14610316 exon Su(var)2-HP2 - chr2R 14610415 exon Su(var)2-HP2 - chr2R_25_14610001 chr2R_14610001 RAL-361 1134 chr2R 14715649 14715713 chr2R 14715776 14715840 21 127 9.5 6.0 7.8 2.4 191 chr2R 14715649 intergenic not near genes chr2R 14715744 intergenic not near genes chr2R 14715840 intergenic not near genes chr2R_21_14715001 chr2R_14715001 RAL-361 1135 chr2R 14722262 14722301 chr2R 14722415 14722449 18 153 8.5 18.0 13.2 1.3 187 chr2R 14722262 intergenic not near genes chr2R 14722356 intergenic not near genes chr2R 14722449 intergenic not near genes chr2R_18_14720001 chr2R_14720001 RAL-361 1136 chr2R 14729913 14729988 chr2R 14730047 14730122 14 133 8.0 6.5 7.2 1.7 209 chr2R 14729913 intergenic not near genes chr2R 14730018 intergenic not near genes chr2R 14730122 intergenic not near genes chr2R_14_14730001 chr2R_14730001 RAL-361 1137 chr2R 14737580 14737639 chr2R 14737714 14737771 18 132 10.5 7.0 8.8 1.8 191 chr2R 14737580 3` UTR CR43428 - chr2R 14737676 3` UTR CR43428 - chr2R 14737771 3` UTR CR43428 - chr2R_18_14735001 chr2R_14735001 RAL-361 1138 chr2R 14799870 14799892 chr2R 14799996 14800018 12 126 3.0 24.5 13.8 0.8 148 chr2R 14799870 intron kn - chr2R 14799944 intron kn - chr2R 14800018 intron kn - chr2R_12_14795001 chr2R_14795001 RAL-361 1139 chr2R 14803427 14803473 chr2R 14803557 14803603 13 130 2.0 6.5 4.2 2.5 176 chr2R 14803427 intron kn - chr2R 14803515 intron kn - chr2R 14803603 intron kn - chr2R_13_14800001 chr2R_14800001 RAL-361 1140 chr2R 14826349 14826385 chr2R 14826503 14826539 11 154 8.5 3.5 6.0 1.6 190 chr2R 14826349 intergenic not near genes chr2R 14826444 intergenic not near genes chr2R 14826539 intergenic not near genes chr2R_11_14825001 chr2R_14825001 RAL-361 1141 chr2R 14842341 14842377 chr2R 14842487 14842523 16 145 13.0 3.0 8.0 1.8 182 chr2R 14842341 intergenic NaPi-T - chr2R 14842432 intergenic NaPi-T - chr2R 14842523 intergenic NaPi-T - chr2R_16_14840001 chr2R_14840001 RAL-361 1142 chr2R 14889168 14889242 chr2R 14897826 14897892 Max-element 17 8653 11.5 0.0 5.8 2.5 8724 chr2R 14889168 intergenic Cyp6a8 - chr2R 14893530 intergenic not near genes chr2R 14897892 intergenic not near genes chr2R_17_14890001 chr2R_14890001 RAL-361 1143 chr2R 14898516 14898575 chr2R 14898652 14898711 15 135 7.0 7.0 7.0 1.9 195 chr2R 14898516 intergenic not near genes chr2R 14898614 intergenic not near genes chr2R 14898711 intergenic Cyp317a1 + chr2R_15_14895001 chr2R_14895001 RAL-361 1144 chr2R 14900845 14900923 chr2R 14900989 14901042 20 142 1.0 10.5 5.8 2.9 197 chr2R 14900845 exon Cyp317a1 + chr2R 14900944 exon Cyp317a1 + chr2R 14901042 exon Cyp317a1 + chr2R_20_14900001 chr2R_14900001 RAL-361 1145 chr2R 14911652 14911725 chr2R 14911825 14911898 42 172 8.0 11.5 9.8 3.9 246 chr2R 14911652 intron CG10249 - chr2R 14911775 intron CG10249 - chr2R 14911898 intron CG10249 - chr2R_42_14910001 chr2R_14910001 RAL-361 1146 chr2R 14919106 14919176 chr2R 14919265 14919335 15 159 2.5 0.0 1.2 6.8 229 chr2R 14919106 intron CG10249 - chr2R 14919220 intron CG10249 - chr2R 14919335 intron CG10249 - chr2R_15_14915001 chr2R_14915001 RAL-361 1147 chr2R 14922093 14922171 chr2R 14922219 14922297 45 125 11.0 12.5 11.8 3.5 204 chr2R 14922093 intron CG10249 - chr2R 14922195 intron CG10249 - chr2R 14922297 intron CG10249 - chr2R_45_14920001 chr2R_14920001 RAL-361 1148 chr2R 14934401 14934420 chr2R 14934542 14934558 4 140 15.0 0.0 7.5 0.5 157 chr2R 14934401 intron CG10253 - chr2R 14934480 intron CG10253 - chr2R 14934558 intron CG10253 - chr2R_4_14930001 chr2R_14930001 RAL-361 1149 chr2R 14934466 14934489 chr2R 14934608 14934631 8 142 3.5 5.0 4.2 1.5 165 chr2R 14934466 intron CG10253 - chr2R 14934548 intron CG10253 - chr2R 14934631 intron CG10253 - chr2R_8_14930001 chr2R_14930001 RAL-361 1150 chr2R 14987344 14987410 chr2R 14987528 14987604 28 193 10.5 12.0 11.2 2.3 260 chr2R 14987344 intron pcs + chr2R 14987474 intron pcs + chr2R 14987604 intron pcs + chr2R_28_14985001 chr2R_14985001 RAL-361 1151 chr2R 15004694 15004738 chr2R 15005073 15005117 jockey 20 379 11.5 6.5 9.0 2.0 423 chr2R 15004694 intergenic not near genes chr2R 15004906 intergenic not near genes chr2R 15005117 intergenic not near genes chr2R_20_15000001 chr2R_15000001 RAL-361 1152 chr2R 15004739 15004746 chr2R 15005068 15005125 jockey 5 369 11.0 6.0 8.5 0.5 386 chr2R 15004739 intergenic not near genes chr2R 15004932 intergenic not near genes chr2R 15005125 intergenic not near genes chr2R_5_15000001 chr2R_15000001 RAL-361 1153 chr2R 15015424 15015490 chr2R 15022886 15022960 mdg1 15 7469 7.0 0.5 3.8 3.1 7536 chr2R 15015424 intron hbs + chr2R 15019192 intron hbs + chr2R 15022960 intron hbs + chr2R_15_15015001 chr2R_15015001 RAL-361 1154 chr2R 15084936 15084993 chr2R 15092034 15092092 297 26 7098 7.0 8.5 7.8 3.0 7156 chr2R 15084936 intergenic not near genes chr2R 15088514 intergenic not near genes chr2R 15092092 5` UTR CR44457 + chr2R_26_15085001 chr2R_15085001 RAL-361 1155 chr2R 15119276 15119344 chr2R 15127807 15127860 Tirant 21 8528 10.5 6.0 8.2 2.3 8584 chr2R 15119276 intron chn + chr2R 15123568 intron chn + chr2R 15127860 intron chn + chr2R_21_15120001 chr2R_15120001 RAL-361 1156 chr2R 15137920 15137987 chr2R 15138049 15138102 18 129 5.0 6.5 5.8 2.6 182 chr2R 15137920 intron chn + chr2R 15138011 intron chn + chr2R 15138102 5` UTR chn + chr2R_18_15135001 chr2R_15135001 RAL-361 1157 chr2R 15196043 15196120 chr2R 15196189 15196266 38 142 6.0 7.0 6.5 5.1 223 chr2R 15196043 intergenic not near genes chr2R 15196154 intergenic not near genes chr2R 15196266 intergenic not near genes chr2R_38_15195001 chr2R_15195001 RAL-361 1158 chr2R 15196409 15196461 chr2R 15196710 15196762 29 300 15.0 9.5 12.2 2.2 353 chr2R 15196409 intergenic not near genes chr2R 15196586 intergenic not near genes chr2R 15196762 intergenic not near genes chr2R_29_15195001 chr2R_15195001 RAL-361 1159 chr2R 15201186 15201258 chr2R 15201327 15201399 33 141 7.5 9.0 8.2 3.6 213 chr2R 15201186 5` UTR GPHR - chr2R 15201292 5` UTR CG11807 + chr2R 15201399 intron CG11807 + chr2R_33_15200001 chr2R_15200001 RAL-361 1160 chr2R 15229721 15229793 chr2R 15229847 15229884 28 122 4.5 5.5 5.0 4.7 163 chr2R 15229721 intron,5` UTR Fs -,CR44370 + chr2R 15229802 intron,5` UTR Fs -,CR44370 + chr2R 15229884 intron,5` UTR Fs -,CR44370 + chr2R_28_15225001 chr2R_15225001 RAL-361 1161 chr2R 15230368 15230394 chr2R 15230645 15230671 7 277 25.0 0.0 12.5 0.5 303 chr2R 15230368 intron,5` UTR Fs -,CR44370 + chr2R 15230520 intron,5` UTR Fs -,CR44370 + chr2R 15230671 intron,5` UTR Fs -,CR44370 + chr2R_7_15230001 chr2R_15230001 RAL-361 1162 chr2R 15230357 15230364 chr2R 15231012 15231019 9 655 32.5 4.5 18.5 0.5 662 chr2R 15230357 intron,5` UTR Fs -,CR44370 + chr2R 15230688 intron,5` UTR Fs -,CR44370 + chr2R 15231019 intron,5` UTR Fs -,CR44370 + chr2R_9_15230001 chr2R_15230001 RAL-361 1163 chr2R 15276564 15276623 chr2R 15276703 15276762 13 139 0.0 12.5 6.2 1.8 198 chr2R 15276564 intron Trpm - chr2R 15276663 intron Trpm - chr2R 15276762 intron Trpm - chr2R_13_15275001 chr2R_15275001 RAL-361 1164 chr2R 15295389 15295396 chr2R 15295524 15295530 4 135 0.0 12.5 6.2 0.6 141 chr2R 15295389 intron Trpm - chr2R 15295460 intron Trpm - chr2R 15295530 intron Trpm - chr2R_4_15295001 chr2R_15295001 RAL-361 1165 chr2R 15296115 15296129 chr2R 15296248 15296262 6 133 17.5 9.5 13.5 0.4 147 chr2R 15296115 intron Trpm - chr2R 15296188 intron Trpm - chr2R 15296262 intron Trpm - chr2R_6_15295001 chr2R_15295001 RAL-361 1166 chr2R 15296134 15296172 chr2R 15296246 15296305 9 125 6.5 9.5 8.0 1.0 171 chr2R 15296134 intron Trpm - chr2R 15296220 intron Trpm - chr2R 15296305 intron Trpm - chr2R_9_15295001 chr2R_15295001 RAL-361 1167 chr2R 15330166 15330231 chr2R 15330350 15330372 22 182 0.0 7.5 3.8 4.6 206 chr2R 15330166 intergenic CR44371 - chr2R 15330269 intergenic CR44371 - chr2R 15330372 intergenic CR44371 - chr2R_22_15330001 chr2R_15330001 RAL-361 1168 chr2R 15340642 15340665 chr2R 15349277 15349297 Tirant 7 8633 21.0 14.0 17.5 0.4 8655 chr2R 15340642 intron unc-5 + chr2R 15344970 intron unc-5 + chr2R 15349297 intron unc-5 + chr2R_7_15340001 chr2R_15340001 RAL-361 1169 chr2R 15395808 15395887 chr2R 15395963 15396016 25 152 6.5 6.0 6.2 3.5 208 chr2R 15395808 intergenic not near genes chr2R 15395912 intergenic not near genes chr2R 15396016 intergenic not near genes chr2R_25_15395001 chr2R_15395001 RAL-361 1170 chr2R 15472023 15472055 chr2R 15472157 15472189 5 134 0.0 15.0 7.5 0.6 166 chr2R 15472023 intergenic CG43729 +,CG8180 - chr2R 15472106 intergenic CG8180 -,CG43729 + chr2R 15472189 3` UTR CG8180 - chr2R_5_15470001 chr2R_15470001 RAL-361 1171 chr2R 15506410 15506480 chr2R 15506746 15506773 22 333 8.0 5.5 6.8 2.8 363 chr2R 15506410 intergenic Ir52d +,Ir52c + chr2R 15506592 exon Ir52d + chr2R 15506773 exon Ir52d + chr2R_22_15505001 chr2R_15505001 RAL-361 1172 chr2R 15572966 15573004 chr2R 15573129 15573152 18 161 12.5 0.0 6.2 2.5 186 chr2R 15572966 3` UTR CG30466 + chr2R 15573059 3` UTR CG30466 + chr2R 15573152 3` UTR,3` UTR CG30466 +,CG8204 - chr2R_18_15570001 chr2R_15570001 RAL-361 1173 chr2R 15606082 15606125 chr2R 15606208 15606252 27 127 16.5 9.0 12.8 2.0 170 chr2R 15606082 intergenic not near genes chr2R 15606167 intergenic not near genes chr2R 15606252 intergenic not near genes chr2R_27_15605001 chr2R_15605001 RAL-361 1174 chr2R 15645770 15645836 chr2R 15645935 15646001 30 165 65.5 71.5 68.5 0.4 231 chr2R 15645770 intron CG42524 + chr2R 15645886 intron CG42524 + chr2R 15646001 intron CG42524 + chr2R_30_15645001 chr2R_15645001 RAL-361 1175 chr2R 15656014 15656066 chr2R 15656155 15656207 12 141 5.5 8.0 6.8 1.5 193 chr2R 15656014 intron CG42524 + chr2R 15656110 intron CG42524 + chr2R 15656207 intron CG42524 + chr2R_12_15655001 chr2R_15655001 RAL-361 1176 chr2R 15679056 15679127 chr2R 15679190 15679256 33 134 9.0 7.0 8.0 3.7 200 chr2R 15679056 intergenic CG8207 -,Vha14-1 - chr2R 15679156 intergenic CG8207 -,Vha14-1 - chr2R 15679256 intergenic Vha14-1 -,CG8207 - chr2R_33_15675001 chr2R_15675001 RAL-361 1177 chr2R 15700210 15700278 chr2R 15700355 15700423 27 144 8.5 9.5 9.0 2.7 213 chr2R 15700210 intron,5` UTR CG30080 -,CG42662 - chr2R 15700316 intron,5` UTR CG30080 -,CG42662 - chr2R 15700423 intron,5` UTR CG30080 -,CG42662 - chr2R_27_15700001 chr2R_15700001 RAL-361 1178 chr2R 15723549 15723625 chr2R 15723694 15723770 31 145 6.5 11.0 8.8 3.2 221 chr2R 15723549 intergenic not near genes chr2R 15723660 intergenic not near genes chr2R 15723770 intergenic not near genes chr2R_31_15720001 chr2R_15720001 RAL-361 1179 chr2R 15828111 15828155 chr2R 15828321 15828365 17 209 1.0 7.0 4.0 3.4 254 chr2R 15828111 intron,intron tun +,Poxn - chr2R 15828238 intron,intron tun +,Poxn - chr2R 15828365 intron,intron tun +,Poxn - chr2R_17_15825001 chr2R_15825001 RAL-361 1180 chr2R 15833483 15833496 chr2R 15833620 15833633 8 137 22.0 15.0 18.5 0.4 150 chr2R 15833483 intron,intron tun +,Poxn - chr2R 15833558 intron,intron tun +,Poxn - chr2R 15833633 intron,intron tun +,Poxn - chr2R_8_15830001 chr2R_15830001 RAL-361 1181 chr2R 15833497 15833539 chr2R 15833613 15833623 27 130 16.5 14.5 15.5 1.6 126 chr2R 15833497 intron,intron tun +,Poxn - chr2R 15833560 intron,intron tun +,Poxn - chr2R 15833623 intron,intron tun +,Poxn - chr2R_27_15830001 chr2R_15830001 RAL-361 1182 chr2R 15891772 15891834 chr2R 15891898 15891960 23 126 9.0 10.0 9.5 2.2 188 chr2R 15891772 intron sli - chr2R 15891866 intron sli - chr2R 15891960 intron sli - chr2R_23_15890001 chr2R_15890001 RAL-361 1183 chr2R 16033455 16033475 chr2R 16033592 16033612 11 137 20.5 0.0 10.2 1.0 157 chr2R 16033455 intron SP2353 + chr2R 16033534 intron SP2353 + chr2R 16033612 intron SP2353 + chr2R_11_16030001 chr2R_16030001 RAL-361 1184 chr2R 16061690 16061714 chr2R 16064373 16064397 Burdock 16 2682 17.5 14.0 15.8 1.0 2707 chr2R 16061690 intergenic not near genes chr2R 16063044 intergenic not near genes chr2R 16064397 intergenic not near genes chr2R_16_16060001 chr2R_16060001 RAL-361 1185 chr2R 16245364 16245430 chr2R 16245508 16245574 31 144 8.0 8.0 8.0 3.4 210 chr2R 16245364 intron CngA - chr2R 16245469 intron CngA - chr2R 16245574 intron CngA - chr2R_31_16245001 chr2R_16245001 RAL-361 1186 chr2R 16380080 16380089 chr2R 16380228 16380237 6 148 16.5 6.0 11.2 0.5 157 chr2R 16380080 5` UTR,3` UTR CR45316 +,CR45317 - chr2R 16380158 3` UTR CR45317 - chr2R 16380237 intergenic CR45317 -,CR45316 +,CG43187 + chr2R_6_16380001 chr2R_16380001 RAL-361 1187 chr2R 16380096 16380149 chr2R 16380223 16380297 12 145 8.5 6.0 7.2 1.5 201 chr2R 16380096 5` UTR,3` UTR CR45316 +,CR45317 - chr2R 16380196 intergenic CR45317 -,CR45316 +,CG43187 + chr2R 16380297 intergenic CR45317 -,CR45316 +,CG43187 + chr2R_12_16380001 chr2R_16380001 RAL-361 1188 chr2R 16385724 16385788 chr2R 16386165 16386235 16 444 6.0 7.5 6.8 2.1 511 chr2R 16385724 3` UTR CG43187 + chr2R 16385980 intergenic CG43187 + chr2R 16386235 intergenic Sema-2b +,CG43187 + chr2R_16_16385001 chr2R_16385001 RAL-361 1189 chr2R 16465637 16465694 chr2R 16465767 16465824 28 128 14.0 7.0 10.5 2.4 187 chr2R 16465637 intergenic not near genes chr2R 16465730 intergenic not near genes chr2R 16465824 intergenic not near genes chr2R_28_16465001 chr2R_16465001 RAL-361 1190 chr2R 16486831 16486875 chr2R 16486976 16487020 14 145 11.5 15.0 13.2 1.0 189 chr2R 16486831 exon CG33458 + chr2R 16486926 intron CG33458 + chr2R 16487020 exon CG33458 + chr2R_14_16485001 chr2R_16485001 RAL-361 1191 chr2R 16489233 16489289 chr2R 16489367 16489423 21 133 10.0 13.0 11.5 1.7 190 chr2R 16489233 intergenic CG33459 + chr2R 16489328 intergenic CG33459 + chr2R 16489423 intergenic CG33459 + chr2R_21_16485001 chr2R_16485001 RAL-361 1192 chr2R 16517996 16518070 chr2R 16518122 16518196 33 124 10.0 11.5 10.8 2.8 200 chr2R 16517996 intron Sema-2a + chr2R 16518096 intron Sema-2a + chr2R 16518196 intron Sema-2a + chr2R_33_16515001 chr2R_16515001 RAL-361 1193 chr2R 16539597 16539648 chr2R 16544856 16544907 copia 28 5259 10.5 13.0 11.8 2.2 5310 chr2R 16539597 intergenic not near genes chr2R 16542252 intergenic not near genes chr2R 16544907 intergenic not near genes chr2R_28_16540001 chr2R_16540001 RAL-361 1194 chr2R 16577861 16577941 chr2R 16578317 16578364 21 448 5.5 6.0 5.8 3.1 503 chr2R 16577861 intergenic not near genes chr2R 16578112 intergenic not near genes chr2R 16578364 intergenic not near genes chr2R_21_16575001 chr2R_16575001 RAL-361 1195 chr2R 16605249 16605274 chr2R 16605382 16605407 9 133 7.0 9.5 8.2 1.0 158 chr2R 16605249 intergenic not near genes chr2R 16605328 intergenic not near genes chr2R 16605407 intergenic not near genes chr2R_9_16605001 chr2R_16605001 RAL-361 1196 chr2R 16617063 16617082 chr2R 16617182 16617212 10 129 8.0 16.0 12.0 0.8 149 chr2R 16617063 intron CG5065 + chr2R 16617138 intron CG5065 + chr2R 16617212 intron CG5065 + chr2R_10_16615001 chr2R_16615001 RAL-361 1197 chr2R 16619930 16620001 chr2R 16620061 16620130 18 130 0.0 0.0 0.0 18.0 200 chr2R 16619930 intron CG5065 + chr2R 16620030 intron CG5065 + chr2R 16620130 intron CG5065 + chr2R_18_16620001 chr2R_16620001 RAL-361 1198 chr2R 16713053 16713061 chr2R 16713187 16713195 7 134 0.0 17.0 8.5 0.7 142 chr2R 16713053 intron CG30463 - chr2R 16713124 intron CG30463 - chr2R 16713195 intron CG30463 - chr2R_7_16710001 chr2R_16710001 RAL-361 1199 chr2R 16714467 16714494 chr2R 16714619 16714646 5 152 7.5 7.0 7.2 0.6 179 chr2R 16714467 intron CG30463 - chr2R 16714556 intron CG30463 - chr2R 16714646 intron CG30463 - chr2R_5_16710001 chr2R_16710001 RAL-361 1200 chr2R 16732817 16732881 chr2R 16733035 16733101 29 219 7.0 11.0 9.0 2.9 284 chr2R 16732817 5` UTR CG30463 - chr2R 16732959 intergenic CG30463 - chr2R 16733101 intergenic CG30463 - chr2R_29_16730001 chr2R_16730001 RAL-361 1201 chr2R 16739435 16739476 chr2R 16739567 16739608 9 130 6.0 0.0 3.0 2.2 173 chr2R 16739435 intergenic not near genes chr2R 16739522 intergenic not near genes chr2R 16739608 intergenic not near genes chr2R_9_16735001 chr2R_16735001 RAL-361 1202 chr2R 16771376 16771454 chr2R 16771510 16771588 27 134 4.0 6.0 5.0 4.5 212 chr2R 16771376 intron unc-104 - chr2R 16771482 intron unc-104 - chr2R 16771588 intron unc-104 - chr2R_27_16770001 chr2R_16770001 RAL-361 1203 chr2R 16772054 16772108 chr2R 16772193 16772247 23 139 9.0 11.5 10.2 2.1 193 chr2R 16772054 intron unc-104 - chr2R 16772150 intron unc-104 - chr2R 16772247 intron unc-104 - chr2R_23_16770001 chr2R_16770001 RAL-361 1204 chr2R 16772110 16772120 chr2R 16772184 16772259 7 127 6.0 8.5 7.2 0.9 149 chr2R 16772110 intron unc-104 - chr2R 16772184 intron unc-104 - chr2R 16772259 5` UTR unc-104 - chr2R_7_16770001 chr2R_16770001 RAL-361 1205 chr2R 16785088 16785102 chr2R 16785221 16785235 5 133 19.0 8.5 13.8 0.3 147 chr2R 16785088 intron CG5522 + chr2R 16785162 intron CG5522 + chr2R 16785235 intron CG5522 + chr2R_5_16785001 chr2R_16785001 RAL-361 1206 chr2R 16785103 16785155 chr2R 16785213 16785288 26 132 7.5 7.5 7.5 3.1 185 chr2R 16785103 intron CG5522 + chr2R 16785196 intron CG5522 + chr2R 16785288 intron CG5522 + chr2R_26_16785001 chr2R_16785001 RAL-361 1207 chr2R 16892295 16892320 chr2R 16892437 16892445 9 140 4.5 13.0 8.8 0.9 150 chr2R 16892295 intron CG8910 - chr2R 16892370 intron CG8910 - chr2R 16892445 intron CG8910 - chr2R_9_16890001 chr2R_16890001 RAL-361 1208 chr2R 16893726 16893803 chr2R 16893859 16893904 25 132 7.5 5.5 6.5 3.3 178 chr2R 16893726 intron CG8910 - chr2R 16893815 intron CG8910 - chr2R 16893904 intron CG8910 - chr2R_25_16890001 chr2R_16890001 RAL-361 1209 chr2R 16910180 16910242 chr2R 16910329 16910391 27 147 7.0 9.0 8.0 3.0 211 chr2R 16910180 intergenic not near genes chr2R 16910286 intergenic not near genes chr2R 16910391 intergenic not near genes chr2R_27_16910001 chr2R_16910001 RAL-361 1210 chr2R 16930609 16930628 chr2R 16930737 16930756 7 128 0.0 8.5 4.2 1.3 147 chr2R 16930609 intron Pkc53E + chr2R 16930682 intron Pkc53E + chr2R 16930756 intron Pkc53E + chr2R_7_16930001 chr2R_16930001 RAL-361 1211 chr2R 16975153 16975220 chr2R 16975280 16975347 22 127 7.5 6.5 7.0 2.8 194 chr2R 16975153 intron Cbp53E + chr2R 16975250 intron Cbp53E + chr2R 16975347 intron Cbp53E + chr2R_22_16975001 chr2R_16975001 RAL-361 1212 chr2R 17147204 17147256 chr2R 17152285 17152337 jockey 23 5081 13.5 12.5 13.0 1.6 5133 chr2R 17147204 intergenic not near genes chr2R 17149770 intergenic not near genes chr2R 17152337 intergenic not near genes chr2R_23_17145001 chr2R_17145001 RAL-361 1213 chr2R 17161310 17161364 chr2R 17161567 17161618 12 256 11.0 3.5 7.2 1.5 308 chr2R 17161310 intergenic CG30457 - chr2R 17161464 intergenic not near genes chr2R 17161618 intergenic not near genes chr2R_12_17160001 chr2R_17160001 RAL-361 1214 chr2R 17176352 17176373 chr2R 17182592 17182613 diver 11 6240 0.0 17.0 8.5 1.2 6261 chr2R 17176352 intergenic not near genes chr2R 17179482 intergenic not near genes chr2R 17182613 intergenic not near genes chr2R_11_17175001 chr2R_17175001 RAL-361 1215 chr2R 17236463 17236521 chr2R 17241717 17241775 copia 11 5251 11.0 10.0 10.5 1.0 5312 chr2R 17236463 intron mbl + chr2R 17239119 intron mbl + chr2R 17241775 intron mbl + chr2R_11_17235001 chr2R_17235001 RAL-361 1216 chr2R 17395241 17395307 chr2R 17395369 17395435 39 127 10.5 8.0 9.2 3.8 194 chr2R 17395241 intron Sip1 + chr2R 17395338 intron Sip1 + chr2R 17395435 intron Sip1 + chr2R_39_17395001 chr2R_17395001 RAL-361 1217 chr2R 17458961 17459027 chr2R 17459096 17459162 26 135 12.5 10.5 11.5 2.1 201 chr2R 17458961 intron CG14478 + chr2R 17459062 intron CG14478 + chr2R 17459162 intron CG14478 + chr2R_26_17455001 chr2R_17455001 RAL-361 1218 chr2R 17485876 17485935 chr2R 17490688 17490747 F-element 22 4811 8.5 11.5 10.0 2.0 4871 chr2R 17485876 5` UTR,intron CG43110 -,NT5E-2 + chr2R 17488312 intron NT5E-2 + chr2R 17490747 intron NT5E-2 + chr2R_22_17485001 chr2R_17485001 RAL-361 1219 chr2R 17697131 17697201 chr2R 17697253 17697329 16 127 5.0 5.5 5.2 2.6 198 chr2R 17697131 intron rdgBbeta - chr2R 17697230 intron rdgBbeta - chr2R 17697329 intron rdgBbeta - chr2R_16_17695001 chr2R_17695001 RAL-361 1220 chr2R 17709943 17710116 chr2R 17710084 17710244 49 142 1.0 0.0 0.5 32.7 301 chr2R 17709943 intron CG6424 - chr2R 17710094 intron CG6424 - chr2R 17710244 intron CG6424 - chr2R_49_17710001 chr2R_17710001 RAL-361 1221 chr2R 17720869 17720942 chr2R 17721002 17721075 40 133 9.0 8.0 8.5 4.2 206 chr2R 17720869 intergenic not near genes chr2R 17720972 intergenic not near genes chr2R 17721075 intergenic not near genes chr2R_40_17720001 chr2R_17720001 RAL-361 1222 chr2R 17730610 17730673 chr2R 17730738 17730801 32 128 7.5 7.0 7.2 3.9 191 chr2R 17730610 intron,intron CG4975 +,CG4984 + chr2R 17730706 intron,intron CG4975 +,CG4984 + chr2R 17730801 intron,intron CG4975 +,CG4984 + chr2R_32_17730001 chr2R_17730001 RAL-361 1223 chr2R 17782319 17782384 chr2R 17783571 17783637 pogo 30 1253 9.5 14.5 12.0 2.3 1318 chr2R 17782319 intergenic CG33981 -,fab1 - chr2R 17782978 intergenic not near genes chr2R 17783637 intergenic mir-31a - chr2R_30_17780001 chr2R_17780001 RAL-361 1224 chr2R 17783981 17784057 chr2R 17784272 17784312 pogo 48 287 9.0 12.0 10.5 4.2 331 chr2R 17783981 intergenic mir-31a - chr2R 17784146 intergenic mir-31a - chr2R 17784312 intergenic mir-31a - chr2R_48_17780001 chr2R_17780001 RAL-361 1225 chr2R 17846740 17846806 chr2R 17846874 17846932 27 133 6.5 11.0 8.8 2.8 192 chr2R 17846740 intron,5` UTR olf186-F +,olf186-M + chr2R 17846836 intron,5` UTR olf186-F +,olf186-M + chr2R 17846932 intron,5` UTR olf186-F +,olf186-M + chr2R_27_17845001 chr2R_17845001 RAL-361 1226 chr2R 17853426 17853501 chr2R 17853715 17853752 34 281 8.5 10.0 9.2 3.3 326 chr2R 17853426 intron,exon olf186-F +,CG30323 + chr2R 17853589 intron,exon olf186-F +,CG30323 + chr2R 17853752 intron,exon olf186-F +,CG30323 + chr2R_34_17850001 chr2R_17850001 RAL-361 1227 chr2R 17918121 17918187 chr2R 17918248 17918307 14 124 10.5 0.5 5.5 2.2 186 chr2R 17918121 intron Elk + chr2R 17918214 intron Elk + chr2R 17918307 intron Elk + chr2R_14_17915001 chr2R_17915001 RAL-361 1228 chr2R 17921404 17921469 chr2R 17921536 17921601 24 132 0.0 12.5 6.2 3.3 197 chr2R 17921404 intron Elk + chr2R 17921502 intron Elk + chr2R 17921601 intron Elk + chr2R_24_17920001 chr2R_17920001 RAL-361 1229 chr2R 17968554 17968622 chr2R 17968708 17968776 30 153 4.0 5.0 4.5 5.5 222 chr2R 17968554 intergenic not near genes chr2R 17968665 intergenic not near genes chr2R 17968776 intergenic not near genes chr2R_30_17965001 chr2R_17965001 RAL-361 1230 chr2R 17982874 17982951 chr2R 17983009 17983086 32 134 6.0 5.0 5.5 4.9 212 chr2R 17982874 intron dpr13 - chr2R 17982980 intron dpr13 - chr2R 17983086 intron dpr13 - chr2R_32_17980001 chr2R_17980001 RAL-361 1231 chr2R 18045626 18045688 chr2R 18046028 18046090 jockey 23 402 12.0 9.5 10.8 1.9 464 chr2R 18045626 intergenic not near genes chr2R 18045858 intergenic not near genes chr2R 18046090 intergenic CG5767 - chr2R_23_18045001 chr2R_18045001 RAL-361 1232 chr2R 18062016 18062051 chr2R 18062152 18062179 4 133 13.0 12.0 12.5 0.3 163 chr2R 18062016 intergenic CG34386 + chr2R 18062098 intergenic CG34386 + chr2R 18062179 intergenic CG34386 + chr2R_4_18060001 chr2R_18060001 RAL-361 1233 chr2R 18089145 18089223 chr2R 18089307 18089383 11 160 3.5 6.0 4.8 1.9 238 chr2R 18089145 intron CG34386 + chr2R 18089264 intron CG34386 + chr2R 18089383 intron CG34386 + chr2R_11_18085001 chr2R_18085001 RAL-361 1234 chr2R 18111646 18111711 chr2R 18115564 18115573 F-element 19 3915 8.0 9.5 8.8 1.9 3927 chr2R 18111646 intergenic not near genes chr2R 18113610 intergenic not near genes chr2R 18115573 intergenic not near genes chr2R_19_18110001 chr2R_18110001 RAL-361 1235 chr2R 18124290 18124364 chr2R 18124417 18124491 34 127 10.5 8.5 9.5 3.2 201 chr2R 18124290 intron stau - chr2R 18124390 intron stau - chr2R 18124491 intron stau - chr2R_34_18120001 chr2R_18120001 RAL-361 1236 chr2R 18195158 18195224 chr2R 18195296 18195362 9 136 4.0 7.0 5.5 1.4 204 chr2R 18195158 intergenic not near genes chr2R 18195260 intergenic not near genes chr2R 18195362 intergenic not near genes chr2R_9_18195001 chr2R_18195001 RAL-361 1237 chr2R 18221145 18221167 chr2R 18221282 18221304 11 137 5.0 7.0 6.0 1.6 159 chr2R 18221145 intergenic not near genes chr2R 18221224 intergenic not near genes chr2R 18221304 intergenic not near genes chr2R_11_18220001 chr2R_18220001 RAL-361 1238 chr2R 18308242 18308316 chr2R 18308398 18308472 28 155 4.5 9.0 6.8 3.6 230 chr2R 18308242 intron sbb - chr2R 18308357 intron sbb - chr2R 18308472 intron sbb - chr2R_28_18305001 chr2R_18305001 RAL-361 1239 chr2R 18320031 18320082 chr2R 18320194 18320248 15 165 5.0 0.0 2.5 4.3 217 chr2R 18320031 intron sbb - chr2R 18320140 intron sbb - chr2R 18320248 intron sbb - chr2R_15_18320001 chr2R_18320001 RAL-361 1240 chr2R 18322149 18322217 chr2R 18322283 18322291 17 125 2.5 10.5 6.5 2.3 142 chr2R 18322149 intron sbb - chr2R 18322220 intron sbb - chr2R 18322291 intron sbb - chr2R_17_18320001 chr2R_18320001 RAL-361 1241 chr2R 18358346 18358396 chr2R 18372608 18372634 roo 12 14260 12.5 0.0 6.2 1.7 14288 chr2R 18358346 intergenic not near genes chr2R 18365490 intergenic not near genes chr2R 18372634 intergenic not near genes chr2R_12_18365001 chr2R_18365001 RAL-361 1242 chr2R 18390818 18390883 chr2R 18390956 18391021 16 138 6.5 3.5 5.0 2.7 203 chr2R 18390818 intergenic CG15068 - chr2R 18390920 intergenic CG15068 - chr2R 18391021 intergenic CG15068 - chr2R_16_18390001 chr2R_18390001 RAL-361 1243 chr2R 18398127 18398133 chr2R 18398271 18398277 5 144 19.0 0.5 9.8 0.5 150 chr2R 18398127 intron GstE10 - chr2R 18398202 intron GstE10 - chr2R 18398277 intron GstE10 - chr2R_5_18395001 chr2R_18395001 RAL-361 1244 chr2R 18398138 18398185 chr2R 18398256 18398329 19 142 7.5 0.5 4.0 3.8 191 chr2R 18398138 intron GstE10 - chr2R 18398234 intron GstE10 - chr2R 18398329 intron GstE10 - chr2R_19_18395001 chr2R_18395001 RAL-361 1245 chr2R 18405705 18405786 chr2R 18405836 18405916 24 130 8.0 7.5 7.8 2.7 211 chr2R 18405705 intergenic GstE6 +,GstE5 + chr2R 18405810 intergenic GstE6 +,GstE5 + chr2R 18405916 intergenic GstE6 + chr2R_24_18405001 chr2R_18405001 RAL-361 1246 chr2R 18480408 18480487 chr2R 18480565 18480644 11 157 0.0 0.0 0.0 11.0 236 chr2R 18480408 intron CG30116 - chr2R 18480526 intron CG30116 - chr2R 18480644 intron CG30116 - chr2R_11_18480001 chr2R_18480001 RAL-361 1247 chr2R 18487788 18487828 chr2R 18495289 18495329 blood 22 7499 12.0 9.5 10.8 1.9 7541 chr2R 18487788 intron CG30116 - chr2R 18491558 intron CG30116 - chr2R 18495329 intron CG30116 - chr2R_22_18490001 chr2R_18490001 RAL-361 1248 chr2R 18528143 18528214 chr2R 18528278 18528349 27 132 9.5 11.5 10.5 2.3 206 chr2R 18528143 intron CG10924 + chr2R 18528246 intron CG10924 + chr2R 18528349 intron CG10924 + chr2R_27_18525001 chr2R_18525001 RAL-361 1249 chr2R 18575748 18575752 chr2R 18581986 18581990 3S18 4 6238 24.5 13.5 19.0 0.2 6242 chr2R 18575748 intron GEFmeso - chr2R 18578869 intron GEFmeso - chr2R 18581990 intron GEFmeso - chr2R_4_18575001 chr2R_18575001 RAL-361 1250 chr2R 18575757 18575825 chr2R 18581984 18582063 3S18 23 6234 7.0 12.5 9.8 2.1 6306 chr2R 18575757 intron GEFmeso - chr2R 18578910 intron GEFmeso - chr2R 18582063 intron GEFmeso - chr2R_23_18575001 chr2R_18575001 RAL-361 1251 chr2R 18590822 18590893 chr2R 18600024 18600078 roo 21 9197 4.0 8.5 6.2 2.9 9256 chr2R 18590822 intron GEFmeso - chr2R 18595450 intron GEFmeso - chr2R 18600078 intron GEFmeso - chr2R_21_18595001 chr2R_18595001 RAL-361 1252 chr2R 18605090 18605154 chr2R 18605232 18605296 25 142 9.0 10.0 9.5 2.4 206 chr2R 18605090 intron GEFmeso - chr2R 18605193 intron GEFmeso - chr2R 18605296 intron GEFmeso - chr2R_25_18605001 chr2R_18605001 RAL-361 1253 chr2R 18620387 18620417 chr2R 18620525 18620555 13 138 18.0 10.0 14.0 0.9 168 chr2R 18620387 intergenic Atg7 - chr2R 18620471 3` UTR Atg7 - chr2R 18620555 3` UTR Atg7 - chr2R_13_18620001 chr2R_18620001 RAL-361 1254 chr2R 18646355 18646431 chr2R 18646550 18646626 33 195 9.5 8.0 8.8 3.4 271 chr2R 18646355 intron SP2637 - chr2R 18646490 intron SP2637 - chr2R 18646626 intron SP2637 - chr2R_33_18645001 chr2R_18645001 RAL-361 1255 chr2R 18692853 18692918 chr2R 18692990 18693054 20 137 5.0 2.5 3.8 4.2 201 chr2R 18692853 exon Sik3 + chr2R 18692954 intron Sik3 + chr2R 18693054 intron Sik3 + chr2R_20_18690001 chr2R_18690001 RAL-361 1256 chr2R 18808021 18808085 chr2R 18808160 18808224 12 138 0.0 0.0 0.0 12.0 203 chr2R 18808021 intergenic CG15096 - chr2R 18808122 intergenic CG15096 - chr2R 18808224 intergenic CG15096 - chr2R_12_18805001 chr2R_18805001 RAL-361 1257 chr2R 18819045 18819104 chr2R 18819214 18819273 21 168 9.5 11.0 10.2 1.9 228 chr2R 18819045 intergenic Phb2 + chr2R 18819159 intergenic Phb2 + chr2R 18819273 intergenic Phb2 + chr2R_21_18815001 chr2R_18815001 RAL-361 1258 chr2R 18871605 18871680 chr2R 18871740 18871808 32 128 5.5 9.5 7.5 3.8 203 chr2R 18871605 intergenic not near genes chr2R 18871706 intergenic not near genes chr2R 18871808 intergenic not near genes chr2R_32_18870001 chr2R_18870001 RAL-361 1259 chr2R 18928636 18928700 chr2R 18928773 18928837 11 116 5.0 8.0 6.5 1.5 201 chr2R 18928636 intron sano + chr2R 18928736 intron sano + chr2R 18928837 intron sano + chr2R_11_18925001 chr2R_18925001 RAL-361 1260 chr2R 18948003 18948078 chr2R 18948139 18948213 14 136 7.0 0.0 3.5 3.1 210 chr2R 18948003 intron sano + chr2R 18948108 intron sano + chr2R 18948213 intron sano + chr2R_14_18945001 chr2R_18945001 RAL-361 1261 chr2R 18953114 18953190 chr2R 18953251 18953325 20 137 7.0 9.0 8.0 2.2 211 chr2R 18953114 intron sano + chr2R 18953220 intron sano + chr2R 18953325 intron sano + chr2R_20_18950001 chr2R_18950001 RAL-361 1262 chr2R 18964874 18964933 chr2R 18965000 18965059 13 126 11.0 9.5 10.2 1.2 185 chr2R 18964874 intergenic not near genes chr2R 18964966 intergenic not near genes chr2R 18965059 intergenic not near genes chr2R_13_18960001 chr2R_18960001 RAL-361 1263 chr2R 19026002 19026054 chr2R 19026153 19026205 8 151 12.0 2.0 7.0 1.0 203 chr2R 19026002 exon 5-HT1B - chr2R 19026104 intron 5-HT1B - chr2R 19026205 intron 5-HT1B - chr2R_8_19025001 chr2R_19025001 RAL-361 1264 chr2R 19042653 19042695 chr2R 19042782 19042818 4 124 19.0 15.0 17.0 0.2 165 chr2R 19042653 intergenic not near genes chr2R 19042736 intergenic not near genes chr2R 19042818 intergenic not near genes chr2R_4_19040001 chr2R_19040001 RAL-361 1265 chr2R 19044788 19044817 chr2R 19045040 19045062 14 249 5.5 1.0 3.2 3.3 274 chr2R 19044788 intergenic not near genes chr2R 19044925 intergenic not near genes chr2R 19045062 intergenic not near genes chr2R_14_19040001 chr2R_19040001 RAL-361 1266 chr2R 19048199 19048224 chr2R 19048610 19048635 12 410 12.0 6.5 9.2 1.2 436 chr2R 19048199 intergenic not near genes chr2R 19048417 intergenic not near genes chr2R 19048635 intergenic not near genes chr2R_12_19045001 chr2R_19045001 RAL-361 1267 chr2R 19048226 19048263 chr2R 19048605 19048674 21 409 5.0 6.5 5.8 3.1 448 chr2R 19048226 intergenic not near genes chr2R 19048450 intergenic not near genes chr2R 19048674 intergenic not near genes chr2R_21_19045001 chr2R_19045001 RAL-361 1268 chr2R 19067677 19067750 chr2R 19067803 19067876 7 125 5.0 0.0 2.5 2.0 199 chr2R 19067677 intron 5-HT1A + chr2R 19067776 intron 5-HT1A + chr2R 19067876 intron 5-HT1A + chr2R_7_19065001 chr2R_19065001 RAL-361 1269 chr2R 19082693 19082699 chr2R 19083160 19083166 6 467 1.0 10.5 5.8 0.9 473 chr2R 19082693 intron 5-HT1A + chr2R 19082930 intron 5-HT1A + chr2R 19083166 intron 5-HT1A + chr2R_6_19080001 chr2R_19080001 RAL-361 1270 chr2R 19082703 19082742 chr2R 19083147 19083208 16 462 0.0 8.5 4.2 3.1 505 chr2R 19082703 intron 5-HT1A + chr2R 19082956 intron 5-HT1A + chr2R 19083208 intron 5-HT1A + chr2R_16_19080001 chr2R_19080001 RAL-361 1271 chr2R 19109780 19109846 chr2R 19109962 19110028 30 179 4.5 11.0 7.8 3.4 248 chr2R 19109780 intron 5-HT1A + chr2R 19109904 intron 5-HT1A + chr2R 19110028 intron 5-HT1A + chr2R_30_19105001 chr2R_19105001 RAL-361 1272 chr2R 19168690 19168764 chr2R 19168821 19168897 19 133 7.5 8.5 8.0 2.1 207 chr2R 19168690 intron CG10737 + chr2R 19168794 intron CG10737 + chr2R 19168897 intron CG10737 + chr2R_19_19165001 chr2R_19165001 RAL-361 1273 chr2R 19234800 19234863 chr2R 19234932 19234995 32 131 14.5 11.0 12.8 2.3 195 chr2R 19234800 intron cora + chr2R 19234898 intron cora + chr2R 19234995 intron cora + chr2R_32_19230001 chr2R_19230001 RAL-361 1274 chr2R 19300917 19300989 chr2R 19301050 19301122 37 132 0.0 7.5 3.8 7.7 205 chr2R 19300917 intron Tab2 + chr2R 19301020 intron Tab2 + chr2R 19301122 intron Tab2 + chr2R_37_19300001 chr2R_19300001 RAL-361 1275 chr2R 19331196 19331206 chr2R 19331316 19331336 5 128 16.5 8.5 12.5 0.4 140 chr2R 19331196 intron,intron Rgk1 -,CG34045 + chr2R 19331266 intron,intron Rgk1 -,CG34045 + chr2R 19331336 intron,intron Rgk1 -,CG34045 + chr2R_5_19330001 chr2R_19330001 RAL-361 1276 chr2R 19352308 19352370 chr2R 19352437 19352499 19 129 8.5 8.0 8.2 2.1 191 chr2R 19352308 intron Rgk1 - chr2R 19352404 intron Rgk1 - chr2R 19352499 intron Rgk1 - chr2R_19_19350001 chr2R_19350001 RAL-361 1277 chr2R 19522594 19522666 chr2R 19522723 19522795 17 128 6.0 12.0 9.0 1.7 201 chr2R 19522594 3` UTR sm - chr2R 19522694 3` UTR sm - chr2R 19522795 3` UTR sm - chr2R_17_19520001 chr2R_19520001 RAL-361 1278 chr2R 19536426 19536484 chr2R 19536558 19536616 28 131 7.0 8.0 7.5 3.3 190 chr2R 19536426 intron sm - chr2R 19536521 intron sm - chr2R 19536616 intron sm - chr2R_28_19535001 chr2R_19535001 RAL-361 1279 chr2R 19560625 19560699 chr2R 19560786 19560860 34 160 5.0 6.0 5.5 5.2 235 chr2R 19560625 intron sm - chr2R 19560742 intron sm - chr2R 19560860 intron sm - chr2R_34_19560001 chr2R_19560001 RAL-361 1280 chr2R 19714691 19714737 chr2R 19714817 19714863 21 126 1.5 9.5 5.5 3.2 172 chr2R 19714691 3` UTR CG8517 + chr2R 19714777 3` UTR CG8517 + chr2R 19714863 3` UTR CG8517 + chr2R_21_19710001 chr2R_19710001 RAL-361 1281 chr2R 19715828 19715857 chr2R 19723332 19723376 blood 9 7517 9.0 8.0 8.5 0.9 7548 chr2R 19715828 intergenic not near genes chr2R 19719602 intergenic not near genes chr2R 19723376 intergenic not near genes chr2R_9_19715001 chr2R_19715001 RAL-361 1282 chr2R 19776553 19776606 chr2R 19779926 19779979 jockey 23 3370 10.5 11.0 10.8 1.9 3426 chr2R 19776553 intergenic not near genes chr2R 19778266 intergenic not near genes chr2R 19779979 intergenic not near genes chr2R_23_19775001 chr2R_19775001 RAL-361 1283 chr2R 19794822 19794853 chr2R 19794975 19795006 9 151 13.0 8.0 10.5 0.8 184 chr2R 19794822 intergenic not near genes chr2R 19794914 intergenic not near genes chr2R 19795006 intergenic not near genes chr2R_9_19790001 chr2R_19790001 RAL-361 1284 chr2R 19794855 19794895 chr2R 19794973 19795006 14 140 5.0 8.0 6.5 1.9 151 chr2R 19794855 intergenic not near genes chr2R 19794930 intergenic not near genes chr2R 19795006 intergenic not near genes chr2R_14_19790001 chr2R_19790001 RAL-361 1285 chr2R 19896081 19896132 chr2R 19896208 19896275 21 137 13.5 10.0 11.8 1.6 194 chr2R 19896081 intergenic not near genes chr2R 19896178 intergenic not near genes chr2R 19896275 intergenic not near genes chr2R_21_19895001 chr2R_19895001 RAL-361 1286 chr2R 19904169 19904224 chr2R 19904299 19904354 19 130 5.5 6.5 6.0 2.7 185 chr2R 19904169 intergenic not near genes chr2R 19904262 intergenic not near genes chr2R 19904354 intergenic not near genes chr2R_19_19900001 chr2R_19900001 RAL-361 1287 chr2R 19914806 19914869 chr2R 19922268 19922331 mdg1 28 7462 10.5 7.0 8.8 2.9 7525 chr2R 19914806 intergenic not near genes chr2R 19918568 intergenic not near genes chr2R 19922331 intergenic not near genes chr2R_28_19915001 chr2R_19915001 RAL-361 1288 chr2R 19951912 19951996 chr2R 19952060 19952140 10 145 5.5 7.0 6.2 1.4 228 chr2R 19951912 3` UTR CG10822 + chr2R 19952026 intergenic CG10822 + chr2R 19952140 intergenic CG10822 + chr2R_10_19950001 chr2R_19950001 RAL-361 1289 chr2R 19957386 19957431 chr2R 19962638 19962683 copia 13 5249 10.0 11.5 10.8 1.1 5297 chr2R 19957386 intergenic CG44623 + chr2R 19960034 intergenic not near genes chr2R 19962683 intergenic not near genes chr2R_13_19960001 chr2R_19960001 RAL-361 1290 chr2R 19957438 19957458 chr2R 19962632 19962670 copia 11 5226 5.5 10.5 8.0 1.2 5232 chr2R 19957438 intergenic CG44623 + chr2R 19960054 intergenic not near genes chr2R 19962670 intergenic not near genes chr2R_11_19960001 chr2R_19960001 RAL-361 1291 chr2R 20012361 20012437 chr2R 20012488 20012564 24 127 5.5 6.0 5.8 3.5 203 chr2R 20012361 intergenic not near genes chr2R 20012462 intergenic not near genes chr2R 20012564 intergenic not near genes chr2R_24_20010001 chr2R_20010001 RAL-361 1292 chr2R 20069205 20069249 chr2R 20071895 20071939 opus 16 2690 0.0 12.5 6.2 2.2 2734 chr2R 20069205 intergenic not near genes chr2R 20070572 intergenic not near genes chr2R 20071939 intergenic not near genes chr2R_16_20070001 chr2R_20070001 RAL-361 1293 chr2R 20080599 20080622 chr2R 20080716 20080749 5 125 0.5 15.0 7.8 0.6 150 chr2R 20080599 intergenic not near genes chr2R 20080674 intergenic not near genes chr2R 20080749 intergenic not near genes chr2R_5_20080001 chr2R_20080001 RAL-361 1294 chr2R 20368470 20368496 chr2R 20377683 20377706 roo 8 9213 15.5 9.5 12.5 0.6 9236 chr2R 20368470 intergenic not near genes chr2R 20373088 intergenic not near genes chr2R 20377706 intergenic not near genes chr2R_8_20370001 chr2R_20370001 RAL-361 1295 chr2R 20379108 20379118 chr2R 20379241 20379251 8 133 16.0 0.0 8.0 0.9 143 chr2R 20379108 intergenic not near genes chr2R 20379180 intergenic not near genes chr2R 20379251 intergenic not near genes chr2R_8_20375001 chr2R_20375001 RAL-361 1296 chr2R 20395121 20395196 chr2R 20395249 20395319 23 128 8.5 7.0 7.8 2.6 198 chr2R 20395121 intergenic not near genes chr2R 20395220 intergenic not near genes chr2R 20395319 intergenic not near genes chr2R_23_20395001 chr2R_20395001 RAL-361 1297 chr2R 20434041 20434101 chr2R 20434178 20434237 8 137 0.0 8.0 4.0 1.6 196 chr2R 20434041 intron CG12484 + chr2R 20434139 intron CG12484 + chr2R 20434237 intron CG12484 + chr2R_8_20430001 chr2R_20430001 RAL-361 1298 chr2R 20439010 20439090 chr2R 20439143 20439210 26 122 5.5 7.0 6.2 3.6 200 chr2R 20439010 intron CG12484 + chr2R 20439110 intron CG12484 + chr2R 20439210 intron CG12484 + chr2R_26_20435001 chr2R_20435001 RAL-361 1299 chr2R 20479595 20479608 chr2R 20479844 20479857 4 248 15.5 5.5 10.5 0.3 262 chr2R 20479595 intergenic not near genes chr2R 20479726 intergenic not near genes chr2R 20479857 intergenic not near genes chr2R_4_20475001 chr2R_20475001 RAL-361 1300 chr2R 20479609 20479651 chr2R 20479838 20479900 15 243 10.0 4.5 7.2 1.8 291 chr2R 20479609 intergenic not near genes chr2R 20479754 intergenic not near genes chr2R 20479900 intergenic not near genes chr2R_15_20475001 chr2R_20475001 RAL-361 1301 chr2R 20506907 20506931 chr2R 20507039 20507061 14 132 0.0 2.5 1.2 6.4 154 chr2R 20506907 intergenic CR44645 + chr2R 20506984 intergenic CR44645 + chr2R 20507061 intergenic CR44645 + chr2R_14_20505001 chr2R_20505001 RAL-361 1302 chr2R 20522993 20523014 chr2R 20523153 20523175 6 158 15.0 9.0 12.0 0.5 182 chr2R 20522993 intergenic not near genes chr2R 20523084 intergenic not near genes chr2R 20523175 intergenic not near genes chr2R_6_20520001 chr2R_20520001 RAL-361 1303 chr2R 20523028 20523070 chr2R 20523149 20523202 13 144 6.5 9.0 7.8 1.5 174 chr2R 20523028 intergenic not near genes chr2R 20523115 intergenic not near genes chr2R 20523202 intergenic not near genes chr2R_13_20520001 chr2R_20520001 RAL-361 1304 chr2R 20533878 20533907 chr2R 20534050 20534079 8 172 0.0 6.0 3.0 2.0 201 chr2R 20533878 3` UTR CG30154 + chr2R 20533978 intergenic CG30154 +,CG18067 + chr2R 20534079 intergenic CG30154 +,CG18067 + chr2R_8_20530001 chr2R_20530001 RAL-361 1305 chr2R 20541944 20542014 chr2R 20542072 20542131 27 127 12.5 17.0 14.8 1.7 187 chr2R 20541944 intergenic not near genes chr2R 20542038 intergenic not near genes chr2R 20542131 intergenic not near genes chr2R_27_20540001 chr2R_20540001 RAL-361 1306 chr2R 20555288 20555335 chr2R 20555430 20555477 19 142 8.5 4.5 6.5 2.5 189 chr2R 20555288 intergenic not near genes chr2R 20555382 intergenic not near genes chr2R 20555477 intergenic not near genes chr2R_19_20555001 chr2R_20555001 RAL-361 1307 chr2R 20571249 20571290 chr2R 20571398 20571424 8 147 15.0 0.0 7.5 0.9 175 chr2R 20571249 intron qsm - chr2R 20571336 intron qsm - chr2R 20571424 intron qsm - chr2R_8_20570001 chr2R_20570001 RAL-361 1308 chr2R 20572522 20572588 chr2R 20572662 20572728 14 140 10.5 4.5 7.5 1.6 206 chr2R 20572522 intron qsm - chr2R 20572625 intron qsm - chr2R 20572728 intron qsm - chr2R_14_20570001 chr2R_20570001 RAL-361 1309 chr2R 20601668 20601755 chr2R 20601803 20601890 18 135 5.0 8.5 6.8 2.3 222 chr2R 20601668 intron bl + chr2R 20601779 intron bl + chr2R 20601890 intron bl + chr2R_18_20600001 chr2R_20600001 RAL-361 1310 chr2R 20667321 20667338 chr2R 20667483 20667500 11 162 20.0 19.0 19.5 0.5 179 chr2R 20667321 intergenic Fem-1 -,exu - chr2R 20667410 intergenic exu -,Fem-1 - chr2R 20667500 3` UTR exu - chr2R_11_20665001 chr2R_20665001 RAL-361 1311 chr2R 20739406 20739474 chr2R 20744224 20744292 F-element 16 4817 9.5 7.5 8.5 1.7 4886 chr2R 20739406 intron dpr + chr2R 20741849 intron dpr + chr2R 20744292 intron dpr + chr2R_16_20740001 chr2R_20740001 RAL-361 1312 chr2R 20757422 20757457 chr2R 20757548 20757584 16 126 7.0 13.5 10.2 1.4 162 chr2R 20757422 intergenic not near genes chr2R 20757503 intergenic not near genes chr2R 20757584 intergenic not near genes chr2R_16_20755001 chr2R_20755001 RAL-361 1313 chr2R 20783269 20783321 chr2R 20788091 20788143 F-element 23 4819 8.0 12.5 10.2 2.1 4874 chr2R 20783269 intergenic not near genes chr2R 20785706 intergenic not near genes chr2R 20788143 intergenic CG43666 - chr2R_23_20785001 chr2R_20785001 RAL-361 1314 chr2R 20838057 20838079 chr2R 20838188 20838210 10 128 0.0 22.0 11.0 0.8 153 chr2R 20838057 intron CR44667 + chr2R 20838134 intron CR44667 + chr2R 20838210 intron CR44667 + chr2R_10_20835001 chr2R_20835001 RAL-361 1315 chr2R 20863072 20863140 chr2R 20863208 20863276 29 135 4.5 7.0 5.8 4.3 204 chr2R 20863072 intergenic not near genes chr2R 20863174 intergenic not near genes chr2R 20863276 intergenic not near genes chr2R_29_20860001 chr2R_20860001 RAL-361 1316 chr2R 20871020 20871090 chr2R 20871148 20871182 30 127 8.0 10.0 9.0 3.0 162 chr2R 20871020 intron Ipk1 + chr2R 20871101 intron Ipk1 + chr2R 20871182 intron Ipk1 + chr2R_30_20870001 chr2R_20870001 RAL-361 1317 chr2R 20875202 20875241 chr2R 20875344 20875383 11 137 5.5 8.5 7.0 1.4 181 chr2R 20875202 intron Ipk1 + chr2R 20875292 exon Ipk1 + chr2R 20875383 exon Ipk1 + chr2R_11_20875001 chr2R_20875001 RAL-361 1318 chr2R 20904373 20904430 chr2R 20904512 20904571 10 139 3.0 8.5 5.8 1.5 198 chr2R 20904373 intergenic not near genes chr2R 20904472 intergenic not near genes chr2R 20904571 intergenic not near genes chr2R_10_20900001 chr2R_20900001 RAL-361 1319 chr2R 20942346 20942373 chr2R 20942479 20942506 15 133 0.0 14.5 7.2 1.8 160 chr2R 20942346 intergenic not near genes chr2R 20942426 intergenic not near genes chr2R 20942506 intergenic not near genes chr2R_15_20940001 chr2R_20940001 RAL-361 1320 chr2R 20962864 20962935 chr2R 20963012 20963083 32 146 8.0 8.5 8.2 3.5 219 chr2R 20962864 intergenic not near genes chr2R 20962974 intergenic not near genes chr2R 20963083 intergenic not near genes chr2R_32_20960001 chr2R_20960001 RAL-361 1321 chr2R 21057443 21057518 chr2R 21057574 21057653 10 133 7.0 0.0 3.5 2.2 210 chr2R 21057443 intergenic shg -,cpa + chr2R 21057548 intergenic cpa +,shg - chr2R 21057653 intergenic cpa +,shg - chr2R_10_21055001 chr2R_21055001 RAL-361 1322 chr2R 21113440 21113479 chr2R 21113579 21113618 19 139 12.0 11.5 11.8 1.5 178 chr2R 21113440 intron ktub + chr2R 21113529 intron ktub + chr2R 21113618 intron ktub + chr2R_19_21110001 chr2R_21110001 RAL-361 1323 chr2R 21151100 21151145 chr2R 21153762 21153828 opus 17 2678 0.0 5.5 2.8 4.5 2728 chr2R 21151100 intron CG30389 - chr2R 21152464 intron CG30389 - chr2R 21153828 intron CG30389 - chr2R_17_21150001 chr2R_21150001 RAL-361 1324 chr2R 21232600 21232678 chr2R 21232820 21232899 9 220 5.5 0.0 2.8 2.4 299 chr2R 21232600 intron ASPP - chr2R 21232750 intron ASPP - chr2R 21232899 intron ASPP - chr2R_9_21230001 chr2R_21230001 RAL-361 1325 chr2R 21241548 21241625 chr2R 21241686 21241763 29 138 5.5 7.0 6.2 4.0 215 chr2R 21241548 intron ASPP - chr2R 21241656 intron ASPP - chr2R 21241763 intron ASPP - chr2R_29_21240001 chr2R_21240001 RAL-361 1326 chr2R 21258458 21258499 chr2R 21258569 21258627 14 116 0.0 14.5 7.2 1.7 169 chr2R 21258458 intron Rgk3 + chr2R 21258542 intron Rgk3 + chr2R 21258627 intron Rgk3 + chr2R_14_21255001 chr2R_21255001 RAL-361 1327 chr2R 21285383 21285436 chr2R 21285510 21285563 16 125 10.5 8.5 9.5 1.5 180 chr2R 21285383 3` UTR,3` UTR MFS16 +,CG10505 - chr2R 21285473 3` UTR,3` UTR MFS16 +,CG10505 - chr2R 21285563 3` UTR,3` UTR MFS16 +,CG10505 - chr2R_16_21285001 chr2R_21285001 RAL-361 1328 chr2R 21322895 21322963 chr2R 21323029 21323092 30 129 10.5 9.0 9.8 2.8 197 chr2R 21322895 5` UTR CG30394 - chr2R 21322994 5` UTR CG30394 - chr2R 21323092 intron CG30394 - chr2R_30_21320001 chr2R_21320001 RAL-361 1329 chr2R 21370476 21370538 chr2R 21370633 21370695 27 157 9.0 8.5 8.8 2.8 219 chr2R 21370476 intron cv-2 - chr2R 21370586 intron cv-2 - chr2R 21370695 intron cv-2 - chr2R_27_21370001 chr2R_21370001 RAL-361 1330 chr2R 21415242 21415317 chr2R 21415382 21415457 26 137 8.0 7.5 7.8 3.0 215 chr2R 21415242 intron Sdc - chr2R 21415350 intron Sdc - chr2R 21415457 intron Sdc - chr2R_26_21415001 chr2R_21415001 RAL-361 1331 chr2R 21416983 21417054 chr2R 21417160 21417231 36 175 7.0 9.0 8.0 4.0 248 chr2R 21416983 intron Sdc - chr2R 21417107 intron Sdc - chr2R 21417231 intron Sdc - chr2R_36_21415001 chr2R_21415001 RAL-361 1332 chr2R 21421293 21421351 chr2R 21421422 21421480 24 129 13.0 11.5 12.2 1.8 187 chr2R 21421293 intron Sdc - chr2R 21421386 intron Sdc - chr2R 21421480 intron Sdc - chr2R_24_21420001 chr2R_21420001 RAL-361 1333 chr2R 21505715 21505794 chr2R 21505846 21505925 40 130 8.0 11.0 9.5 3.8 210 chr2R 21505715 intron MESK2 + chr2R 21505820 intron MESK2 + chr2R 21505925 intron MESK2 + chr2R_40_21505001 chr2R_21505001 RAL-361 1334 chr2R 21521715 21521766 chr2R 21521851 21521896 22 133 15.0 5.5 10.2 2.0 181 chr2R 21521715 exon CG30289 - chr2R 21521806 exon CG30289 - chr2R 21521896 intergenic CG30289 - chr2R_22_21520001 chr2R_21520001 RAL-361 1335 chr2R 21540638 21540697 chr2R 21540906 21540965 17 268 7.5 4.5 6.0 2.4 327 chr2R 21540638 intron Egfr + chr2R 21540802 intron Egfr + chr2R 21540965 intron Egfr + chr2R_17_21540001 chr2R_21540001 RAL-361 1336 chr2R 21546738 21546820 chr2R 21546869 21546925 24 109 4.5 6.0 5.2 3.9 187 chr2R 21546738 intron Egfr + chr2R 21546832 intron Egfr + chr2R 21546925 intron Egfr + chr2R_24_21545001 chr2R_21545001 RAL-361 1337 chr2R 21601216 21601263 chr2R 21601312 21601376 14 116 6.0 10.0 8.0 1.6 160 chr2R 21601216 intergenic not near genes chr2R 21601296 intergenic not near genes chr2R 21601376 intergenic not near genes chr2R_14_21600001 chr2R_21600001 RAL-361 1338 chr2R 21641954 21642032 chr2R 21642085 21642106 20 116 5.0 7.5 6.2 2.8 152 chr2R 21641954 intergenic not near genes chr2R 21642030 intergenic not near genes chr2R 21642106 intergenic not near genes chr2R_20_21640001 chr2R_21640001 RAL-361 1339 chr2R 21700119 21700179 chr2R 21700243 21700315 27 129 10.5 7.5 9.0 2.7 196 chr2R 21700119 intron HmgZ - chr2R 21700217 intron HmgZ - chr2R 21700315 intron HmgZ - chr2R_27_21700001 chr2R_21700001 RAL-361 1340 chr2R 21721527 21721611 chr2R 21721665 21721748 36 134 5.0 6.5 5.8 5.3 221 chr2R 21721527 intron LBR + chr2R 21721638 intron LBR + chr2R 21721748 intron LBR + chr2R_36_21720001 chr2R_21720001 RAL-361 1341 chr2R 21725182 21725220 chr2R 21725309 21725347 16 127 0.0 10.0 5.0 2.7 165 chr2R 21725182 intergenic not near genes chr2R 21725264 intergenic not near genes chr2R 21725347 intergenic not near genes chr2R_16_21725001 chr2R_21725001 RAL-361 1342 chr2R 21738228 21738284 chr2R 21747437 21747494 roo 17 9204 6.5 11.0 8.8 1.7 9266 chr2R 21738228 intergenic not near genes chr2R 21742861 intergenic not near genes chr2R 21747494 intergenic not near genes chr2R_17_21740001 chr2R_21740001 RAL-361 1343 chr2R 21753046 21753111 chr2R 21753576 21753646 roo 18 532 5.5 9.0 7.2 2.2 600 chr2R 21753046 intergenic not near genes chr2R 21753346 intergenic not near genes chr2R 21753646 intergenic not near genes chr2R_18_21750001 chr2R_21750001 RAL-361 1344 chr2R 21797284 21797340 chr2R 21797414 21797470 18 128 4.0 8.5 6.2 2.5 186 chr2R 21797284 intergenic CG34204 + chr2R 21797377 intergenic CG34204 + chr2R 21797470 intergenic not near genes chr2R_18_21795001 chr2R_21795001 RAL-361 1345 chr2R 21803421 21803462 chr2R 21803548 21803589 26 126 10.5 5.5 8.0 2.9 168 chr2R 21803421 5` UTR CR9284 + chr2R 21803505 5` UTR CR9284 + chr2R 21803589 intron CR9284 + chr2R_26_21800001 chr2R_21800001 RAL-361 1346 chr2R 21809472 21809509 chr2R 21817762 21817799 roo 13 8290 13.0 7.0 10.0 1.2 8327 chr2R 21809472 intergenic not near genes chr2R 21813636 intergenic not near genes chr2R 21817799 intergenic not near genes chr2R_13_21810001 chr2R_21810001 RAL-361 1347 chr2R 21833473 21833547 chr2R 21833602 21833676 23 129 3.5 12.0 7.8 2.6 203 chr2R 21833473 exon CG34040 - chr2R 21833574 intergenic CG34040 - chr2R 21833676 intergenic CG34040 - chr2R_23_21830001 chr2R_21830001 RAL-361 1348 chr2R 21840868 21840935 chr2R 21840999 21841022 29 129 9.0 6.0 7.5 3.4 154 chr2R 21840868 intergenic not near genes chr2R 21840945 intergenic not near genes chr2R 21841022 intergenic not near genes chr2R_29_21840001 chr2R_21840001 RAL-361 1349 chr2R 21889556 21889566 chr2R 21889699 21889709 5 143 13.0 5.5 9.2 0.5 153 chr2R 21889556 intron Fili + chr2R 21889632 intron Fili + chr2R 21889709 intron Fili + chr2R_5_21885001 chr2R_21885001 RAL-361 1350 chr2R 21889567 21889591 chr2R 21889698 21889734 10 140 9.0 5.5 7.2 1.2 167 chr2R 21889567 intron Fili + chr2R 21889650 intron Fili + chr2R 21889734 intron Fili + chr2R_10_21885001 chr2R_21885001 RAL-361 1351 chr2R 21901547 21901553 chr2R 21901674 21901680 6 127 5.5 0.0 2.8 1.6 133 chr2R 21901547 intron Fili + chr2R 21901614 intron Fili + chr2R 21901680 intron Fili + chr2R_6_21900001 chr2R_21900001 RAL-361 1352 chr2R 21906223 21906300 chr2R 21906374 21906451 33 151 5.5 7.0 6.2 4.6 228 chr2R 21906223 intron Fili + chr2R 21906337 intron Fili + chr2R 21906451 intron Fili + chr2R_33_21905001 chr2R_21905001 RAL-361 1353 chr2R 21912387 21912469 chr2R 21912723 21912769 33 332 7.0 5.0 6.0 4.7 382 chr2R 21912387 intron Fili + chr2R 21912578 intron Fili + chr2R 21912769 intron Fili + chr2R_33_21910001 chr2R_21910001 RAL-361 1354 chr2R 21914308 21914328 chr2R 21914445 21914465 11 137 6.0 5.5 5.8 1.6 157 chr2R 21914308 intron Fili + chr2R 21914386 intron Fili + chr2R 21914465 intron Fili + chr2R_11_21910001 chr2R_21910001 RAL-361 1355 chr2R 21932219 21932277 chr2R 21932327 21932377 26 122 12.5 14.0 13.2 1.8 158 chr2R 21932219 intron Fili + chr2R 21932298 intron Fili + chr2R 21932377 intron Fili + chr2R_26_21930001 chr2R_21930001 RAL-361 1356 chr2R 22003065 22003112 chr2R 22003184 22003248 24 132 11.0 0.0 5.5 3.7 183 chr2R 22003065 intron CG34370 - chr2R 22003156 intron CG34370 - chr2R 22003248 intron CG34370 - chr2R_24_22000001 chr2R_22000001 RAL-361 1357 chr2R 22009726 22009801 chr2R 22009852 22009927 22 125 8.0 13.5 10.8 1.9 201 chr2R 22009726 intron CG34370 - chr2R 22009826 intron CG34370 - chr2R 22009927 intron CG34370 - chr2R_22_22005001 chr2R_22005001 RAL-361 1358 chr2R 22029486 22029531 chr2R 22029614 22029659 17 128 10.0 0.5 5.2 2.7 173 chr2R 22029486 intron CG34370 - chr2R 22029572 intron CG34370 - chr2R 22029659 intron CG34370 - chr2R_17_22025001 chr2R_22025001 RAL-361 1359 chr2R 22072631 22072712 chr2R 22072766 22072847 15 135 2.5 5.5 4.0 3.0 216 chr2R 22072631 exon CG11474 - chr2R 22072739 intron CG11474 - chr2R 22072847 exon CG11474 - chr2R_15_22070001 chr2R_22070001 RAL-361 1360 chr2R 22132222 22132256 chr2R 22132348 22132382 13 125 7.0 11.0 9.0 1.3 160 chr2R 22132222 intergenic not near genes chr2R 22132302 intergenic not near genes chr2R 22132382 intergenic not near genes chr2R_13_22130001 chr2R_22130001 RAL-361 1361 chr2R 22179197 22179217 chr2R 22179330 22179350 9 129 0.0 11.0 5.5 1.4 153 chr2R 22179197 intron CG11170 - chr2R 22179274 intron CG11170 - chr2R 22179350 intron CG11170 - chr2R_9_22175001 chr2R_22175001 RAL-361 1362 chr2R 22179220 22179233 chr2R 22179323 22179363 10 126 0.0 11.0 5.5 1.5 143 chr2R 22179220 intron CG11170 - chr2R 22179292 intron CG11170 - chr2R 22179363 intron CG11170 - chr2R_10_22175001 chr2R_22175001 RAL-361 1363 chr2R 22185624 22185705 chr2R 22185773 22185854 8 149 5.0 0.0 2.5 2.3 230 chr2R 22185624 exon MED16 + chr2R 22185739 3` UTR MED16 + chr2R 22185854 3` UTR MED16 + chr2R_8_22185001 chr2R_22185001 RAL-361 1364 chr2R 22189394 22189466 chr2R 22189572 22189643 28 176 8.0 5.5 6.8 3.6 249 chr2R 22189394 3` UTR Vps35 + chr2R 22189518 3` UTR Vps35 + chr2R 22189643 3` UTR Vps35 + chr2R_28_22185001 chr2R_22185001 RAL-361 1365 chr2R 22292026 22292106 chr2R 22292163 22292234 34 132 7.5 8.5 8.0 3.8 208 chr2R 22292026 5` UTR CR43422 + chr2R 22292130 5` UTR CR43422 + chr2R 22292234 5` UTR CR43422 + chr2R_34_22290001 chr2R_22290001 RAL-361 1366 chr2R 22327314 22327345 chr2R 22333636 22333664 6 6319 49.0 66.5 57.8 0.1 6350 chr2R 22327314 exon Gp150 + chr2R 22330489 exon,intron T3dh -,pgc + chr2R 22333664 3` UTR Liprin-gamma - chr2R_6_22330001 chr2R_22330001 RAL-361 1367 chr2R 22327312 22327385 chr2R 22333669 22333702 19 6325 58.0 60.5 59.2 0.3 6390 chr2R 22327312 exon Gp150 + chr2R 22330507 exon,intron T3dh -,pgc + chr2R 22333702 3` UTR Liprin-gamma - chr2R_19_22330001 chr2R_22330001 RAL-361 1368 chr2R 22349650 22349653 chr2R 22351484 22351487 jockey 4 1834 25.0 9.0 17.0 0.2 1837 chr2R 22349650 intron Liprin-gamma - chr2R 22350568 intron Liprin-gamma - chr2R 22351487 intron Liprin-gamma - chr2R_4_22350001 chr2R_22350001 RAL-361 1369 chr2R 22349654 22349708 chr2R 22351483 22351542 jockey 18 1833 10.0 9.0 9.5 1.7 1888 chr2R 22349654 intron Liprin-gamma - chr2R 22350598 intron Liprin-gamma - chr2R 22351542 intron Liprin-gamma - chr2R_18_22350001 chr2R_22350001 RAL-361 1370 chr2R 22360336 22360348 chr2R 22360819 22360831 jockey 10 483 20.0 6.5 13.2 0.7 495 chr2R 22360336 intron Liprin-gamma - chr2R 22360584 intron Liprin-gamma - chr2R 22360831 intron Liprin-gamma - chr2R_10_22360001 chr2R_22360001 RAL-361 1371 chr2R 22374591 22374638 chr2R 22374728 22374775 16 137 9.0 9.5 9.2 1.6 184 chr2R 22374591 3` UTR CR44759 - chr2R 22374683 3` UTR CR44759 - chr2R 22374775 3` UTR CR44759 - chr2R_16_22370001 chr2R_22370001 RAL-361 1372 chr2R 22444759 22444810 chr2R 22444925 22444975 19 162 0.0 20.0 10.0 1.7 216 chr2R 22444759 intergenic not near genes chr2R 22444867 intergenic not near genes chr2R 22444975 intergenic not near genes chr2R_19_22440001 chr2R_22440001 RAL-361 1373 chr2R 22459678 22459696 chr2R 22459812 22459835 10 138 13.5 13.0 13.2 0.7 157 chr2R 22459678 intron CG10384 + chr2R 22459756 intron CG10384 + chr2R 22459835 intron CG10384 + chr2R_10_22455001 chr2R_22455001 RAL-361 1374 chr2R 22464391 22464401 chr2R 22464528 22464538 9 137 9.5 22.5 16.0 0.5 147 chr2R 22464391 intron CG10384 + chr2R 22464464 intron CG10384 + chr2R 22464538 intron CG10384 + chr2R_9_22460001 chr2R_22460001 RAL-361 1375 chr2R 22465080 22465114 chr2R 22465185 22465256 15 137 5.0 10.5 7.8 1.7 176 chr2R 22465080 intron CG10384 + chr2R 22465168 intron CG10384 + chr2R 22465256 intron CG10384 + chr2R_15_22465001 chr2R_22465001 RAL-361 1376 chr2R 22465275 22465314 chr2R 22465518 22465557 BS 26 243 16.0 11.0 13.5 1.8 282 chr2R 22465275 intron CG10384 + chr2R 22465416 intron CG10384 + chr2R 22465557 intron CG10384 + chr2R_26_22465001 chr2R_22465001 RAL-361 1377 chr2R 22499796 22499862 chr2R 22499926 22499988 5 129 0.0 6.5 3.2 1.2 192 chr2R 22499796 intron px - chr2R 22499892 intron px - chr2R 22499988 intron px - chr2R_5_22495001 chr2R_22495001 RAL-361 1378 chr2R 22503817 22503890 chr2R 22503962 22504035 17 145 6.0 6.5 6.2 2.4 218 chr2R 22503817 intron px - chr2R 22503926 intron px - chr2R 22504035 intron px - chr2R_17_22500001 chr2R_22500001 RAL-361 1379 chr2R 22506666 22506736 chr2R 22506794 22506863 37 127 9.5 9.0 9.2 3.6 197 chr2R 22506666 intron px - chr2R 22506764 intron px - chr2R 22506863 intron px - chr2R_37_22505001 chr2R_22505001 RAL-361 1380 chr2R 22525709 22525771 chr2R 22529314 22529376 jockey 21 3603 11.0 11.5 11.2 1.7 3667 chr2R 22525709 intron px - chr2R 22527542 intron px - chr2R 22529376 intron px - chr2R_21_22525001 chr2R_22525001 RAL-361 1381 chr2R 22545577 22545635 chr2R 22545706 22545764 30 129 8.0 9.5 8.8 3.1 187 chr2R 22545577 intron px - chr2R 22545670 intron px - chr2R 22545764 intron px - chr2R_30_22545001 chr2R_22545001 RAL-361 1382 chr2R 22580399 22580445 chr2R 22586600 22586645 diver 9 6201 6.0 5.5 5.8 1.3 6246 chr2R 22580399 intron dnr1 - chr2R 22583522 intron dnr1 - chr2R 22586645 intron dnr1 - chr2R_9_22580001 chr2R_22580001 RAL-361 1383 chr2R 22596008 22596062 chr2R 22596160 22596214 16 152 11.5 12.0 11.8 1.2 206 chr2R 22596008 intron CG3927 + chr2R 22596111 intron CG3927 + chr2R 22596214 3` UTR CG3927 + chr2R_16_22595001 chr2R_22595001 RAL-361 1384 chr2R 22620779 22620856 chr2R 22620929 22620998 30 148 7.5 5.0 6.2 4.2 219 chr2R 22620779 5` UTR CG33143 + chr2R 22620888 5` UTR CG33143 + chr2R 22620998 5` UTR CG33143 + chr2R_30_22620001 chr2R_22620001 RAL-361 1385 chr2R 22623410 22623442 chr2R 22623600 22623632 19 189 0.5 7.5 4.0 3.8 222 chr2R 22623410 intron CG33143 + chr2R 22623521 intron CG33143 + chr2R 22623632 intron CG33143 + chr2R_19_22620001 chr2R_22620001 RAL-361 1386 chr2R 22623445 22623478 chr2R 22623599 22623653 14 185 0.5 7.0 3.8 2.9 208 chr2R 22623445 intron CG33143 + chr2R 22623549 intron CG33143 + chr2R 22623653 intron CG33143 + chr2R_14_22620001 chr2R_22620001 RAL-361 1387 chr2R 22735205 22735289 chr2R 22735331 22735405 26 126 9.0 11.5 10.2 2.3 200 chr2R 22735205 intron jbug - chr2R 22735305 intron jbug - chr2R 22735405 intron jbug - chr2R_26_22735001 chr2R_22735001 RAL-361 1388 chr2R 22754019 22754088 chr2R 22754154 22754223 18 125 6.5 5.0 5.8 2.6 204 chr2R 22754019 intron CG42260 - chr2R 22754121 intron CG42260 - chr2R 22754223 intron CG42260 - chr2R_18_22750001 chr2R_22750001 RAL-361 1389 chr2R 22787557 22787592 chr2R 22787740 22787775 20 183 10.5 9.5 10.0 1.8 218 chr2R 22787557 intron CG42260 - chr2R 22787666 intron CG42260 - chr2R 22787775 intron CG42260 - chr2R_20_22785001 chr2R_22785001 RAL-361 1390 chr2R 22833879 22833884 chr2R 22836056 22836061 4 2177 43.5 7.0 25.2 0.2 2182 chr2R 22833879 exon CG30265 + chr2R 22834970 intron CG12490 + chr2R 22836061 exon CG12490 + chr2R_4_22830001 chr2R_22830001 RAL-361 1391 chr2R 22835317 22835393 chr2R 22835443 22835519 27 118 8.0 8.5 8.2 2.9 202 chr2R 22835317 exon CG12490 + chr2R 22835418 exon CG12490 + chr2R 22835519 exon CG12490 + chr2R_27_22835001 chr2R_22835001 RAL-361 1392 chr2R 22842990 22843047 chr2R 22845000 22845059 flea 19 2012 10.0 11.0 10.5 1.7 2069 chr2R 22842990 intergenic CG9826 + chr2R 22844024 intergenic not near genes chr2R 22845059 intergenic not near genes chr2R_19_22840001 chr2R_22840001 RAL-361 1393 chr2R 22945011 22945084 chr2R 22945175 22945247 29 164 6.5 9.5 8.0 3.2 236 chr2R 22945011 exon CG42694 + chr2R 22945129 3` UTR CG42694 + chr2R 22945247 intergenic CG42694 + chr2R_29_22945001 chr2R_22945001 RAL-361 1394 chr2R 22953340 22953381 chr2R 22953484 22953525 8 144 10.0 5.0 7.5 0.9 185 chr2R 22953340 intron CR32835 - chr2R 22953432 3` UTR CR32835 - chr2R 22953525 3` UTR CR32835 - chr2R_8_22950001 chr2R_22950001 RAL-361 1395 chr2R 22957002 22957060 chr2R 22957131 22957189 28 129 9.5 10.0 9.8 2.6 187 chr2R 22957002 intergenic CR44780 - chr2R 22957096 intergenic CR44780 - chr2R 22957189 3` UTR CR44780 - chr2R_28_22955001 chr2R_22955001 RAL-361 1396 chr2R 22958768 22958802 chr2R 22963905 22963939 flea 4 5137 7.0 9.5 8.2 0.4 5171 chr2R 22958768 intergenic not near genes chr2R 22961354 intergenic not near genes chr2R 22963939 intergenic not near genes chr2R_4_22960001 chr2R_22960001 RAL-361 1397 chr2R 22978234 22978270 chr2R 22978362 22978390 23 127 18.0 8.5 13.2 1.6 156 chr2R 22978234 intergenic not near genes chr2R 22978312 intergenic not near genes chr2R 22978390 intergenic not near genes chr2R_23_22975001 chr2R_22975001 RAL-361 1398 chr2R 22988264 22988272 chr2R 22988395 22988403 5 131 17.5 8.5 13.0 0.4 139 chr2R 22988264 intron twi + chr2R 22988334 intron twi + chr2R 22988403 intron twi + chr2R_5_22985001 chr2R_22985001 RAL-361 1399 chr2R 22988273 22988323 chr2R 22988393 22988454 13 129 12.5 8.0 10.2 1.2 181 chr2R 22988273 intron twi + chr2R 22988364 intron twi + chr2R 22988454 intron twi + chr2R_13_22985001 chr2R_22985001 RAL-361 1400 chr2R 23052606 23052676 chr2R 23052732 23052802 45 126 18.5 11.5 15.0 2.8 196 chr2R 23052606 intergenic not near genes chr2R 23052704 intergenic not near genes chr2R 23052802 intergenic not near genes chr2R_45_23050001 chr2R_23050001 RAL-361 1401 chr2R 23053956 23054007 chr2R 23054084 23054104 16 124 9.5 0.5 5.0 2.7 148 chr2R 23053956 intergenic not near genes chr2R 23054030 intergenic not near genes chr2R 23054104 intergenic not near genes chr2R_16_23050001 chr2R_23050001 RAL-361 1402 chr2R 23093626 23093702 chr2R 23093758 23093835 18 132 0.5 6.5 3.5 4.0 209 chr2R 23093626 intron CG9876 - chr2R 23093730 exon CG9876 - chr2R 23093835 exon CG9876 - chr2R_18_23090001 chr2R_23090001 RAL-361 1403 chr2R 23108920 23108956 chr2R 23109052 23109088 10 132 9.5 12.5 11.0 0.8 168 chr2R 23108920 intergenic not near genes chr2R 23109004 intergenic not near genes chr2R 23109088 intergenic not near genes chr2R_10_23105001 chr2R_23105001 RAL-361 1404 chr2R 23130505 23130538 chr2R 23130647 23130680 14 142 12.0 7.0 9.5 1.3 175 chr2R 23130505 intergenic CG3215 - chr2R 23130592 intergenic CG3215 - chr2R 23130680 intergenic CG3215 - chr2R_14_23130001 chr2R_23130001 RAL-361 1405 chr2R 23130539 23130569 chr2R 23130643 23130713 9 138 7.0 7.0 7.0 1.1 174 chr2R 23130539 intergenic CG3215 - chr2R 23130626 intergenic CG3215 - chr2R 23130713 intergenic not near genes chr2R_9_23130001 chr2R_23130001 RAL-361 1406 chr2R 23134804 23134839 chr2R 23134922 23134972 11 129 0.5 8.0 4.2 2.1 168 chr2R 23134804 intergenic not near genes chr2R 23134888 intergenic not near genes chr2R 23134972 intergenic not near genes chr2R_11_23130001 chr2R_23130001 RAL-361 1407 chr2R 23173384 23173452 chr2R 23174045 23174113 36 661 13.0 13.5 13.2 2.5 729 chr2R 23173384 intron CG34371 - chr2R 23173748 intron CG34371 - chr2R 23174113 intron CG34371 - chr2R_36_23170001 chr2R_23170001 RAL-361 1408 chr2R 23188507 23188582 chr2R 23188635 23188700 30 128 11.0 14.0 12.5 2.2 193 chr2R 23188507 intron CG34371 - chr2R 23188604 intron CG34371 - chr2R 23188700 intron CG34371 - chr2R_30_23185001 chr2R_23185001 RAL-361 1409 chr2R 23236768 23236853 chr2R 23236914 23236997 17 145 4.5 1.5 3.0 4.2 229 chr2R 23236768 intergenic not near genes chr2R 23236882 intergenic not near genes chr2R 23236997 intergenic not near genes chr2R_17_23235001 chr2R_23235001 RAL-361 1410 chr2R 23279619 23279694 chr2R 23279964 23280039 26 341 7.0 6.0 6.5 3.5 420 chr2R 23279619 intergenic not near genes chr2R 23279829 intergenic not near genes chr2R 23280039 intergenic not near genes chr2R_26_23275001 chr2R_23275001 RAL-361 1411 chr2R 23303812 23303873 chr2R 23304084 23304144 23 272 8.0 5.5 6.8 2.9 332 chr2R 23303812 intergenic not near genes chr2R 23303978 intergenic not near genes chr2R 23304144 intergenic not near genes chr2R_23_23300001 chr2R_23300001 RAL-361 1412 chr2R 23339465 23339528 chr2R 23339595 23339658 30 130 8.0 9.0 8.5 3.2 193 chr2R 23339465 intergenic not near genes chr2R 23339562 intergenic not near genes chr2R 23339658 intergenic not near genes chr2R_30_23335001 chr2R_23335001 RAL-361 1413 chr2R 23402565 23402635 chr2R 23407691 23407761 flea 32 5126 7.0 13.5 10.2 2.9 5196 chr2R 23402565 intergenic CG3520 - chr2R 23405163 intergenic not near genes chr2R 23407761 intergenic not near genes chr2R_32_23405001 chr2R_23405001 RAL-361 1414 chr2R 23421040 23421112 chr2R 23421169 23421240 30 128 8.5 8.0 8.2 3.3 200 chr2R 23421040 intergenic CG9815 - chr2R 23421140 intergenic CG9815 - chr2R 23421240 intergenic CG9815 - chr2R_30_23420001 chr2R_23420001 RAL-361 1415 chr2R 23437187 23437213 chr2R 23437314 23437340 5 127 13.0 13.0 13.0 0.4 153 chr2R 23437187 intergenic not near genes chr2R 23437264 intergenic not near genes chr2R 23437340 intergenic not near genes chr2R_5_23435001 chr2R_23435001 RAL-361 1416 chr2R 23461123 23461133 chr2R 23461224 23461260 5 118 14.0 16.5 15.2 0.3 137 chr2R 23461123 intron CG43795 + chr2R 23461192 intron CG43795 + chr2R 23461260 intron CG43795 + chr2R_5_23460001 chr2R_23460001 RAL-361 1417 chr2R 23464099 23464122 chr2R 23464219 23464253 9 129 17.0 14.0 15.5 0.5 154 chr2R 23464099 intron CG43795 + chr2R 23464176 intron CG43795 + chr2R 23464253 intron CG43795 + chr2R_9_23460001 chr2R_23460001 RAL-361 1418 chr2R 23518149 23518221 chr2R 23518277 23518355 17 133 8.0 0.0 4.0 3.4 206 chr2R 23518149 intergenic not near genes chr2R 23518252 intergenic not near genes chr2R 23518355 intergenic not near genes chr2R_17_23515001 chr2R_23515001 RAL-361 1419 chr2R 23529530 23529606 chr2R 23537156 23537202 412 27 7617 6.5 9.0 7.8 3.1 7672 chr2R 23529530 exon bw - chr2R 23533366 intron bw - chr2R 23537202 exon bw - chr2R_27_23530001 chr2R_23530001 RAL-361 1420 chr2R 23588047 23588075 chr2R 23588175 23588203 11 128 5.5 10.5 8.0 1.2 156 chr2R 23588047 intron apt + chr2R 23588125 intron apt + chr2R 23588203 intron apt + chr2R_11_23585001 chr2R_23585001 RAL-361 1421 chr2R 23594792 23594865 chr2R 23595059 23595132 35 265 7.0 12.0 9.5 3.3 340 chr2R 23594792 intron apt + chr2R 23594962 intron apt + chr2R 23595132 intron apt + chr2R_35_23590001 chr2R_23590001 RAL-361 1422 chr2R 23606989 23607186 chr2R 23607120 23607329 58 135 0.0 0.0 0.0 58.0 340 chr2R 23606989 intron CG17664 - chr2R 23607159 intron CG17664 - chr2R 23607329 intron CG17664 - chr2R_58_23605001 chr2R_23605001 RAL-361 1423 chr2R 23632108 23632158 chr2R 23632243 23632292 14 134 0.0 11.0 5.5 2.2 184 chr2R 23632108 intergenic not near genes chr2R 23632200 intergenic retn + chr2R 23632292 intergenic retn + chr2R_14_23630001 chr2R_23630001 RAL-361 1424 chr2R 23744727 23744788 chr2R 23744845 23744917 36 127 10.5 11.5 11.0 3.0 190 chr2R 23744727 intron egl - chr2R 23744822 intron egl - chr2R 23744917 intron egl - chr2R_36_23740001 chr2R_23740001 RAL-361 1425 chr2R 23784434 23784493 chr2R 23784562 23784620 28 126 8.5 10.0 9.2 2.7 186 chr2R 23784434 intron CG9850 - chr2R 23784527 intron CG9850 - chr2R 23784620 intron CG9850 - chr2R_28_23780001 chr2R_23780001 RAL-361 1426 chr2R 23784494 23784507 chr2R 23784552 23784609 5 103 8.0 9.5 8.8 0.5 115 chr2R 23784494 intron CG9850 - chr2R 23784552 intron CG9850 - chr2R 23784609 intron CG9850 - chr2R_5_23780001 chr2R_23780001 RAL-361 1427 chr2R 23819094 23819135 chr2R 23819239 23819280 15 145 16.0 9.0 12.5 1.1 186 chr2R 23819094 intergenic not near genes chr2R 23819187 intergenic not near genes chr2R 23819280 intergenic not near genes chr2R_15_23815001 chr2R_23815001 RAL-361 1428 chr2R 23824111 23824131 chr2R 23824252 23824272 9 140 14.5 12.5 13.5 0.6 161 chr2R 23824111 intron,intron CG5549 +,CG4763 - chr2R 23824192 intron,intron CG5549 +,CG4763 - chr2R 23824272 intron,intron CG5549 +,CG4763 - chr2R_9_23820001 chr2R_23820001 RAL-361 1429 chr2R 23824136 23824168 chr2R 23824225 23824309 16 135 4.5 8.0 6.2 2.2 173 chr2R 23824136 intron,intron CG5549 +,CG4763 - chr2R 23824222 intron,intron CG5549 +,CG4763 - chr2R 23824309 intron,intron CG5549 +,CG4763 - chr2R_16_23820001 chr2R_23820001 RAL-361 1430 chr2R 23914253 23914327 chr2R 23921927 23921971 412 40 7669 7.5 10.5 9.0 4.0 7718 chr2R 23914253 exon kcc + chr2R 23918112 intron kcc + chr2R 23921971 exon kcc + chr2R_40_23915001 chr2R_23915001 RAL-361 1431 chr2R 23994106 23994170 chr2R 23994232 23994296 29 123 10.0 11.0 10.5 2.5 190 chr2R 23994106 intron CG3860 - chr2R 23994201 intron CG3860 - chr2R 23994296 exon CG3860 - chr2R_29_23990001 chr2R_23990001 RAL-361 1432 chr2R 24008365 24008398 chr2R 24008501 24008534 22 136 19.5 12.5 16.0 1.3 169 chr2R 24008365 intron Unc-89 - chr2R 24008450 intron Unc-89 - chr2R 24008534 intron Unc-89 - chr2R_22_24005001 chr2R_24005001 RAL-361 1433 chr2R 24008401 24008443 chr2R 24008499 24008559 26 133 7.5 12.0 9.8 2.4 158 chr2R 24008401 intron Unc-89 - chr2R 24008480 intron Unc-89 - chr2R 24008559 intron Unc-89 - chr2R_26_24005001 chr2R_24005001 RAL-361 1434 chr2R 24145287 24145300 chr2R 24145427 24145437 5 141 25.0 10.0 17.5 0.3 150 chr2R 24145287 intron Dat + chr2R 24145362 intron Dat + chr2R 24145437 intron Dat + chr2R_5_24145001 chr2R_24145001 RAL-361 1435 chr2R 24145307 24145353 chr2R 24145420 24145496 29 135 9.0 8.5 8.8 3.0 189 chr2R 24145307 intron Dat + chr2R 24145402 intron Dat + chr2R 24145496 intron Dat + chr2R_29_24145001 chr2R_24145001 RAL-361 1436 chr2R 24147027 24147044 chr2R 24154655 24154672 412 6 7628 21.0 8.0 14.5 0.4 7645 chr2R 24147027 intron Dat + chr2R 24150850 intron Dat + chr2R 24154672 intron Dat + chr2R_6_24150001 chr2R_24150001 RAL-361 1437 chr2R 24147047 24147090 chr2R 24154647 24154718 412 23 7624 9.5 7.5 8.5 2.4 7671 chr2R 24147047 intron Dat + chr2R 24150882 intron Dat + chr2R 24154718 intron Dat + chr2R_23_24150001 chr2R_24150001 RAL-361 1438 chr2R 24177190 24177263 chr2R 24184725 24184798 412 43 7535 13.5 6.5 10.0 3.9 7608 chr2R 24177190 3` UTR Nop60B + chr2R 24180994 intron Nop60B + chr2R 24184798 intron Nop60B + chr2R_43_24180001 chr2R_24180001 RAL-361 1439 chr2R 24217155 24217182 chr2R 24218167 24218194 8 1012 66.0 57.5 61.8 0.1 1039 chr2R 24217155 intron CG30419 - chr2R 24217674 intron CG30419 - chr2R 24218194 intron CG30419 - chr2R_8_24215001 chr2R_24215001 RAL-361 1440 chr2R 24254278 24254310 chr2R 24254423 24254445 8 143 19.0 9.0 14.0 0.5 167 chr2R 24254278 exon nord + chr2R 24254362 exon nord + chr2R 24254445 3` UTR nord + chr2R_8_24250001 chr2R_24250001 RAL-361 1441 chr2R 24254323 24254353 chr2R 24254418 24254481 14 124 10.0 9.0 9.5 1.3 158 chr2R 24254323 exon nord + chr2R 24254402 exon nord + chr2R 24254481 3` UTR nord + chr2R_14_24250001 chr2R_24250001 RAL-361 1442 chr2R 24272776 24272813 chr2R 24272904 24272921 roo 10 122 15.0 16.5 15.8 0.6 145 chr2R 24272776 intergenic not near genes chr2R 24272848 intergenic not near genes chr2R 24272921 intergenic not near genes chr2R_10_24270001 chr2R_24270001 RAL-361 1443 chr2R 24320136 24320201 chr2R 24320263 24320307 18 122 7.5 11.0 9.2 1.8 171 chr2R 24320136 intergenic not near genes chr2R 24320222 intergenic not near genes chr2R 24320307 intergenic not near genes chr2R_18_24320001 chr2R_24320001 RAL-361 1444 chr2R 24353379 24353430 chr2R 24361791 24361811 roo 12 8408 15.5 10.0 12.8 0.9 8432 chr2R 24353379 intron,intron bs +,CR44811 - chr2R 24357595 intron,intron bs +,CR44811 - chr2R 24361811 intron,intron bs +,CR44811 - chr2R_12_24355001 chr2R_24355001 RAL-361 1445 chr2R 24430888 24430944 chr2R 24431011 24431077 9 136 0.0 10.0 5.0 1.5 189 chr2R 24430888 intergenic CG15873 -,Pgam5-2 - chr2R 24430982 intergenic CG15873 -,Pgam5-2 - chr2R 24431077 intergenic Pgam5-2 -,CG15873 - chr2R_9_24430001 chr2R_24430001 RAL-361 1446 chr2R 24456023 24456099 chr2R 24456153 24456200 37 129 9.0 11.0 10.0 3.4 177 chr2R 24456023 intron CG13579 + chr2R 24456112 intron CG13579 + chr2R 24456200 intron CG13579 + chr2R_37_24455001 chr2R_24455001 RAL-361 1447 chr2R 24493036 24493088 chr2R 24493175 24493227 24 138 9.0 6.5 7.8 2.7 191 chr2R 24493036 intergenic CG13589 -,CG13590 - chr2R 24493132 intergenic CG13590 -,CG13589 - chr2R 24493227 intergenic CG13590 -,CG13589 - chr2R_24_24490001 chr2R_24490001 RAL-361 1448 chr2R 24590087 24590088 chr2R 24590207 24590230 4 136 18.5 11.5 15.0 0.2 143 chr2R 24590087 intron pio + chr2R 24590158 intron pio + chr2R 24590230 intron pio + chr2R_4_24590001 chr2R_24590001 RAL-361 1449 chr2R 24590089 24590141 chr2R 24590205 24590258 14 131 6.5 11.0 8.8 1.4 169 chr2R 24590089 intron pio + chr2R 24590174 intron pio + chr2R 24590258 intron pio + chr2R_14_24590001 chr2R_24590001 RAL-361 1450 chr2R 24636854 24636880 chr2R 24636990 24637016 13 136 20.0 0.0 10.0 1.2 162 chr2R 24636854 intron CG13594 - chr2R 24636935 intron CG13594 - chr2R 24637016 intron CG13594 - chr2R_13_24635001 chr2R_24635001 RAL-361 1451 chr2R 24647549 24647614 chr2R 24655156 24655221 412 29 7607 9.5 11.0 10.2 2.6 7672 chr2R 24647549 intergenic not near genes chr2R 24651385 intergenic not near genes chr2R 24655221 intergenic not near genes chr2R_29_24650001 chr2R_24650001 RAL-361 1452 chr2R 24719804 24719819 chr2R 24719949 24719981 11 159 7.5 16.0 11.8 0.9 177 chr2R 24719804 intron Mid1 - chr2R 24719892 intron Mid1 - chr2R 24719981 intron Mid1 - chr2R_11_24715001 chr2R_24715001 RAL-361 1453 chr2R 24721200 24721279 chr2R 24721401 24721480 39 201 6.0 8.5 7.2 4.8 280 chr2R 24721200 intron Mid1 - chr2R 24721340 intron Mid1 - chr2R 24721480 intron Mid1 - chr2R_39_24720001 chr2R_24720001 RAL-361 1454 chr2R 24727839 24727859 chr2R 24735397 24735410 mdg1 5 7555 14.5 6.5 10.5 0.4 7571 chr2R 24727839 intron Mid1 - chr2R 24731624 intron Mid1 - chr2R 24735410 intron Mid1 - chr2R_5_24730001 chr2R_24730001 RAL-361 1455 chr2R 24727863 24727916 chr2R 24735391 24735432 mdg1 22 7550 5.0 5.0 5.0 3.7 7569 chr2R 24727863 intron Mid1 - chr2R 24731648 intron Mid1 - chr2R 24735432 intron Mid1 - chr2R_22_24730001 chr2R_24730001 RAL-361 1456 chr2R 24737099 24737170 chr2R 24737269 24737340 30 168 4.5 8.0 6.2 4.2 241 chr2R 24737099 intergenic Mid1 - chr2R 24737220 intergenic not near genes chr2R 24737340 intergenic not near genes chr2R_30_24735001 chr2R_24735001 RAL-361 1457 chr2R 24763591 24763639 chr2R 24765592 24765664 G2 14 2021 6.5 8.5 7.5 1.6 2073 chr2R 24763591 exon CG3894 + chr2R 24764628 intron CG3894 + chr2R 24765664 exon CG3894 + chr2R_14_24760001 chr2R_24760001 RAL-361 1458 chr2R 24859799 24859861 chr2R 24859925 24859997 22 128 10.5 4.0 7.2 2.7 198 chr2R 24859799 5` UTR CR44829 + chr2R 24859898 5` UTR CR44829 + chr2R 24859997 5` UTR CR44829 + chr2R_22_24855001 chr2R_24855001 RAL-361 1459 chr2R 24894069 24894134 chr2R 24894288 24894353 23 218 12.5 8.0 10.2 2.1 284 chr2R 24894069 intron NaCP60E + chr2R 24894211 5` UTR NaCP60E + chr2R 24894353 5` UTR NaCP60E + chr2R_23_24890001 chr2R_24890001 RAL-361 1460 chr2R 25017989 25018017 chr2R 25018125 25018131 11 132 17.5 7.0 12.2 0.8 142 chr2R 25017989 intron uzip + chr2R 25018060 intron uzip + chr2R 25018131 intron uzip + chr2R_11_25015001 chr2R_25015001 RAL-361 1461 chr2R 25018024 25018067 chr2R 25018123 25018162 18 126 8.0 6.5 7.2 2.2 138 chr2R 25018024 intron uzip + chr2R 25018093 intron uzip + chr2R 25018162 intron uzip + chr2R_18_25015001 chr2R_25015001 RAL-361 1462 chr2R 25076526 25076530 chr2R 25076656 25076660 4 130 15.0 23.5 19.2 0.2 134 chr2R 25076526 intron gol - chr2R 25076593 intron gol - chr2R 25076660 intron gol - chr2R_4_25075001 chr2R_25075001 RAL-361 1463 chr2R 25078941 25079011 chr2R 25079119 25079189 25 177 10.0 6.5 8.2 2.7 248 chr2R 25078941 intron gol - chr2R 25079065 intron gol - chr2R 25079189 intron gol - chr2R_25_25075001 chr2R_25075001 RAL-361 1464 chr2R 25099250 25099264 chr2R 25099311 25099356 6 78 7.5 3.5 5.5 0.9 106 chr2R 25099250 intron lov - chr2R 25099303 intron lov - chr2R 25099356 intron lov - chr2R_6_25095001 chr2R_25095001 RAL-361 1465 chr2R 25101231 25101236 chr2R 25101383 25101388 4 152 20.0 7.5 13.8 0.3 157 chr2R 25101231 intron lov - chr2R 25101310 intron lov - chr2R 25101388 intron lov - chr2R_4_25100001 chr2R_25100001 RAL-361 1466 chr2R 25101238 25101291 chr2R 25101381 25101420 21 149 9.0 7.5 8.2 2.3 182 chr2R 25101238 intron lov - chr2R 25101329 intron lov - chr2R 25101420 intron lov - chr2R_21_25100001 chr2R_25100001 RAL-361 1467 chr2R 25104735 25104802 chr2R 25104910 25104977 28 174 8.0 10.0 9.0 2.8 242 chr2R 25104735 intron lov - chr2R 25104856 intron lov - chr2R 25104977 intron lov - chr2R_28_25100001 chr2R_25100001 RAL-361 1468 chr2R 25122917 25122993 chr2R 25123046 25123122 26 129 7.0 8.5 7.8 3.0 205 chr2R 25122917 intron lov - chr2R 25123020 intron lov - chr2R 25123122 intron lov - chr2R_26_25120001 chr2R_25120001 RAL-361 1469 chr2R 25141613 25141678 chr2R 25159353 25159418 roo 23 17738 11.5 13.5 12.5 1.7 17805 chr2R 25141613 intergenic not near genes chr2R 25150516 intergenic not near genes chr2R 25159418 intergenic not near genes chr2R_23_25150001 chr2R_25150001 RAL-361 1470 chr2R 25182265 25182279 chr2R 25182393 25182407 4 128 9.5 1.5 5.5 0.6 142 chr2R 25182265 intergenic not near genes chr2R 25182336 intergenic not near genes chr2R 25182407 intergenic not near genes chr2R_4_25180001 chr2R_25180001 RAL-361 1471 chr2R 25193295 25193365 chr2R 25193482 25193559 16 193 4.5 3.5 4.0 3.2 264 chr2R 25193295 intron CG9380 - chr2R 25193427 intron CG9380 - chr2R 25193559 intron CG9380 - chr2R_16_25190001 chr2R_25190001 RAL-361 1472 chr3L 68938 69009 chr3L 69075 69146 32 135 6.0 11.0 8.5 3.4 208 chr3L 68938 3` UTR Lsp1gamma + chr3L 69042 intergenic Lsp1gamma +,CR44510 + chr3L 69146 5` UTR CR44510 + chr3L_32_65001 chr3L_65001 RAL-361 1473 chr3L 95367 95435 chr3L 95505 95558 25 135 7.5 7.0 7.2 3.0 191 chr3L 95367 intergenic not near genes chr3L 95462 intergenic not near genes chr3L 95558 intergenic not near genes chr3L_25_95001 chr3L_95001 RAL-361 1474 chr3L 108561 108622 chr3L 108754 108815 27 193 7.0 7.5 7.2 3.3 254 chr3L 108561 intergenic not near genes chr3L 108688 intergenic not near genes chr3L 108815 intergenic not near genes chr3L_27_105001 chr3L_105001 RAL-361 1475 chr3L 110166 110230 chr3L 119383 119438 roo 31 9217 13.5 12.5 13.0 2.2 9272 chr3L 110166 intergenic not near genes chr3L 114802 intergenic not near genes chr3L 119438 intergenic not near genes chr3L_31_110001 chr3L_110001 RAL-361 1476 chr3L 144336 144392 chr3L 144597 144653 19 260 8.0 6.0 7.0 2.4 317 chr3L 144336 3` UTR Pdk1 + chr3L 144494 3` UTR Pdk1 + chr3L 144653 3` UTR Pdk1 + chr3L_19_140001 chr3L_140001 RAL-361 1477 chr3L 161658 161718 chr3L 162534 162594 24 876 8.0 14.0 11.0 2.0 936 chr3L 161658 intron p130CAS + chr3L 162126 intron p130CAS + chr3L 162594 intron p130CAS + chr3L_24_160001 chr3L_160001 RAL-361 1478 chr3L 371850 371889 chr3L 371960 372024 17 129 6.0 5.5 5.8 2.5 174 chr3L 371850 intron trh - chr3L 371937 intron trh - chr3L 372024 intron trh - chr3L_17_370001 chr3L_370001 RAL-361 1479 chr3L 390911 390986 chr3L 391060 391142 35 155 5.5 8.0 6.8 4.5 231 chr3L 390911 intron trh - chr3L 391026 intron trh - chr3L 391142 intron trh - chr3L_35_390001 chr3L_390001 RAL-361 1480 chr3L 393133 393144 chr3L 393282 393293 5 148 25.5 9.0 17.2 0.3 160 chr3L 393133 3` UTR CR45378 - chr3L 393213 3` UTR CR45378 - chr3L 393293 intergenic CR45378 -,CR43969 + chr3L_5_390001 chr3L_390001 RAL-361 1481 chr3L 393148 393205 chr3L 393277 393354 18 148 10.5 8.0 9.2 1.8 206 chr3L 393148 3` UTR CR45378 - chr3L 393251 3` UTR CR45378 - chr3L 393354 intergenic CR45378 -,CR43969 + chr3L_18_390001 chr3L_390001 RAL-361 1482 chr3L 402662 402669 chr3L 409744 409772 297 5 7099 21.0 8.0 14.5 0.3 7110 chr3L 402662 intergenic not near genes chr3L 406217 intergenic not near genes chr3L 409772 intergenic not near genes chr3L_5_405001 chr3L_405001 RAL-361 1483 chr3L 402674 402707 chr3L 409741 409789 297 25 7096 10.5 7.5 9.0 2.5 7115 chr3L 402674 intergenic not near genes chr3L 406232 intergenic not near genes chr3L 409789 intergenic not near genes chr3L_25_405001 chr3L_405001 RAL-361 1484 chr3L 456999 457063 chr3L 457237 457301 15 238 7.0 5.0 6.0 2.1 302 chr3L 456999 intron klar - chr3L 457150 intron klar - chr3L 457301 intron klar - chr3L_15_455001 chr3L_455001 RAL-361 1485 chr3L 459933 460002 chr3L 460060 460129 27 124 9.5 9.0 9.2 2.6 196 chr3L 459933 intron klar - chr3L 460031 intron klar - chr3L 460129 intron klar - chr3L_27_460001 chr3L_460001 RAL-361 1486 chr3L 559484 559488 chr3L 559923 559927 7 439 21.0 0.0 10.5 0.6 443 chr3L 559484 intron hipk + chr3L 559706 intron hipk + chr3L 559927 intron hipk + chr3L_7_555001 chr3L_555001 RAL-361 1487 chr3L 559490 559529 chr3L 559915 559933 7 430 12.0 0.0 6.0 1.0 443 chr3L 559490 intron hipk + chr3L 559712 intron hipk + chr3L 559933 intron hipk + chr3L_7_555001 chr3L_555001 RAL-361 1488 chr3L 592915 592959 chr3L 593041 593085 20 126 13.0 11.0 12.0 1.5 170 chr3L 592915 intergenic MED14 + chr3L 593000 intergenic MED14 + chr3L 593085 intergenic MED14 + chr3L_20_590001 chr3L_590001 RAL-361 1489 chr3L 642434 642490 chr3L 642570 642631 29 141 14.5 12.5 13.5 2.0 197 chr3L 642434 5` UTR CR43334 + chr3L 642532 5` UTR CR43334 + chr3L 642631 5` UTR CR43334 + chr3L_29_640001 chr3L_640001 RAL-361 1490 chr3L 651345 651421 chr3L 651483 651553 36 137 7.5 10.5 9.0 3.6 208 chr3L 651345 intergenic Gale +,CG3402 - chr3L 651449 intergenic CG3402 -,Gale + chr3L 651553 3` UTR CG3402 - chr3L_36_650001 chr3L_650001 RAL-361 1491 chr3L 697155 697167 chr3L 697494 697505 9 338 13.5 20.0 16.8 0.5 350 chr3L 697155 intron CG13894 - chr3L 697330 intron CG13894 - chr3L 697505 intron CG13894 - chr3L_9_695001 chr3L_695001 RAL-361 1492 chr3L 697169 697184 chr3L 697493 697513 8 335 11.5 20.0 15.8 0.5 344 chr3L 697169 intron CG13894 - chr3L 697341 intron CG13894 - chr3L 697513 intron CG13894 - chr3L_8_695001 chr3L_695001 RAL-361 1493 chr3L 713417 713432 chr3L 713544 713547 4 124 14.5 9.0 11.8 0.3 130 chr3L 713417 intergenic not near genes chr3L 713482 intergenic not near genes chr3L 713547 intergenic not near genes chr3L_4_710001 chr3L_710001 RAL-361 1494 chr3L 727977 728005 chr3L 728103 728131 20 126 8.0 9.5 8.8 2.0 154 chr3L 727977 intergenic not near genes chr3L 728054 intergenic not near genes chr3L 728131 intergenic not near genes chr3L_20_725001 chr3L_725001 RAL-361 1495 chr3L 748158 748235 chr3L 748287 748364 29 129 5.5 8.0 6.8 3.7 206 chr3L 748158 intron hng3 - chr3L 748261 intron hng3 - chr3L 748364 intron hng3 - chr3L_29_745001 chr3L_745001 RAL-361 1496 chr3L 761146 761197 chr3L 761273 761324 16 127 12.0 10.0 11.0 1.3 178 chr3L 761146 intergenic not near genes chr3L 761235 intergenic not near genes chr3L 761324 intergenic not near genes chr3L_16_760001 chr3L_760001 RAL-361 1497 chr3L 789863 789947 chr3L 790398 790483 roo 25 535 0.0 0.0 0.0 25.0 620 chr3L 789863 intergenic not near genes chr3L 790173 intergenic not near genes chr3L 790483 intergenic not near genes chr3L_25_790001 chr3L_790001 RAL-361 1498 chr3L 802565 802566 chr3L 11777678 11777678 6 10975112 32.5 28.0 30.2 0.2 10975113 chr3L 802565 intergenic not near genes chr3L 6290122 intergenic not near genes chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_6_6290001 chr3L_6290001 RAL-361 1499 chr3L 822057 822072 chr3L 822187 822202 9 130 0.0 19.0 9.5 0.9 145 chr3L 822057 intergenic not near genes chr3L 822130 intergenic not near genes chr3L 822202 intergenic not near genes chr3L_9_820001 chr3L_820001 RAL-361 1500 chr3L 854135 854203 chr3L 854263 854331 24 126 6.5 8.5 7.5 2.8 196 chr3L 854135 exon dpr20 - chr3L 854233 intron dpr20 - chr3L 854331 exon dpr20 - chr3L_24_850001 chr3L_850001 RAL-361 1501 chr3L 857951 857979 chr3L 866482 866510 Tirant 8 8530 20.0 6.5 13.2 0.6 8559 chr3L 857951 intergenic not near genes chr3L 862230 intergenic not near genes chr3L 866510 5` UTR CG12502 + chr3L_8_860001 chr3L_860001 RAL-361 1502 chr3L 857980 858010 chr3L 866479 866541 Tirant 10 8514 12.0 6.5 9.2 1.0 8561 chr3L 857980 intergenic not near genes chr3L 862260 intergenic not near genes chr3L 866541 5` UTR CG12502 + chr3L_10_860001 chr3L_860001 RAL-361 1503 chr3L 922139 922169 chr3L 922271 922301 15 129 13.0 12.0 12.5 1.1 162 chr3L 922139 intron Glut1 + chr3L 922220 intron Glut1 + chr3L 922301 intron Glut1 + chr3L_15_920001 chr3L_920001 RAL-361 1504 chr3L 922173 922185 chr3L 922256 922317 8 126 9.0 10.0 9.5 0.8 144 chr3L 922173 intron Glut1 + chr3L 922245 intron Glut1 + chr3L 922317 intron Glut1 + chr3L_8_920001 chr3L_920001 RAL-361 1505 chr3L 925137 925157 chr3L 932613 932633 mdg1 11 7476 23.0 11.0 17.0 0.6 7496 chr3L 925137 intron Glut1 + chr3L 928885 intron Glut1 + chr3L 932633 intron Glut1 + chr3L_11_925001 chr3L_925001 RAL-361 1506 chr3L 925158 925200 chr3L 932612 932653 mdg1 26 7473 12.5 11.0 11.8 2.0 7495 chr3L 925158 intron Glut1 + chr3L 928906 intron Glut1 + chr3L 932653 intron Glut1 + chr3L_26_925001 chr3L_925001 RAL-361 1507 chr3L 933825 933889 chr3L 934001 934065 22 174 9.5 5.5 7.5 2.6 240 chr3L 933825 intron Glut1 + chr3L 933945 intron Glut1 + chr3L 934065 intron Glut1 + chr3L_22_930001 chr3L_930001 RAL-361 1508 chr3L 939731 939790 chr3L 940902 940961 jockey 22 1171 10.0 14.0 12.0 1.7 1230 chr3L 939731 intron Glut1 + chr3L 940346 intron Glut1 + chr3L 940961 intron Glut1 + chr3L_22_940001 chr3L_940001 RAL-361 1509 chr3L 976524 976571 chr3L 976700 976747 24 176 4.0 12.0 8.0 2.7 223 chr3L 976524 intron Glut1 + chr3L 976636 intron Glut1 + chr3L 976747 intron Glut1 + chr3L_24_975001 chr3L_975001 RAL-361 1510 chr3L 1008462 1008531 chr3L 1008588 1008657 22 125 8.5 5.5 7.0 2.8 195 chr3L 1008462 intron trio - chr3L 1008560 intron trio - chr3L 1008657 intron trio - chr3L_22_1005001 chr3L_1005001 RAL-361 1511 chr3L 1009061 1009081 chr3L 1009205 1009225 12 144 0.0 20.5 10.2 1.1 164 chr3L 1009061 intron trio - chr3L 1009143 intron trio - chr3L 1009225 intron trio - chr3L_12_1005001 chr3L_1005001 RAL-361 1512 chr3L 1015104 1015160 chr3L 1015241 1015287 17 131 2.0 10.0 6.0 2.4 183 chr3L 1015104 intron trio - chr3L 1015196 intron trio - chr3L 1015287 intron trio - chr3L_17_1015001 chr3L_1015001 RAL-361 1513 chr3L 1028772 1028834 chr3L 1028908 1028970 30 136 14.0 8.5 11.2 2.5 198 chr3L 1028772 intron trio - chr3L 1028871 intron trio - chr3L 1028970 intron trio - chr3L_30_1025001 chr3L_1025001 RAL-361 1514 chr3L 1045508 1045514 chr3L 1045657 1045663 5 149 18.0 7.5 12.8 0.4 155 chr3L 1045508 intron bab1 - chr3L 1045586 intron bab1 - chr3L 1045663 intron bab1 - chr3L_5_1045001 chr3L_1045001 RAL-361 1515 chr3L 1045519 1045573 chr3L 1045648 1045722 25 145 7.5 5.5 6.5 3.3 203 chr3L 1045519 intron bab1 - chr3L 1045620 intron bab1 - chr3L 1045722 intron bab1 - chr3L_25_1045001 chr3L_1045001 RAL-361 1516 chr3L 1047308 1047336 chr3L 1055170 1055197 412 10 7858 14.0 11.5 12.8 0.7 7889 chr3L 1047308 intron bab1 - chr3L 1051252 intron bab1 - chr3L 1055197 intron bab1 - chr3L_10_1050001 chr3L_1050001 RAL-361 1517 chr3L 1047337 1047385 chr3L 1055164 1055217 412 16 7844 10.0 9.0 9.5 1.5 7880 chr3L 1047337 intron bab1 - chr3L 1051277 intron bab1 - chr3L 1055217 intron bab1 - chr3L_16_1050001 chr3L_1050001 RAL-361 1518 chr3L 1109587 1109655 chr3L 1109725 1109793 32 135 11.0 12.0 11.5 2.6 206 chr3L 1109587 intergenic not near genes chr3L 1109690 intergenic not near genes chr3L 1109793 intergenic not near genes chr3L_32_1105001 chr3L_1105001 RAL-361 1519 chr3L 1120542 1120620 chr3L 1120673 1120760 21 136 4.5 0.0 2.2 6.6 218 chr3L 1120542 intergenic not near genes chr3L 1120651 intergenic not near genes chr3L 1120760 intergenic not near genes chr3L_21_1120001 chr3L_1120001 RAL-361 1520 chr3L 1145190 1145265 chr3L 1145319 1145397 19 128 5.0 0.0 2.5 5.4 207 chr3L 1145190 intron bab2 - chr3L 1145294 intron bab2 - chr3L 1145397 intron bab2 - chr3L_19_1145001 chr3L_1145001 RAL-361 1521 chr3L 1154078 1154157 chr3L 1163280 1163357 roo 23 9201 8.5 8.0 8.2 2.5 9279 chr3L 1154078 intron bab2 - chr3L 1158718 intron bab2 - chr3L 1163357 intron bab2 - chr3L_23_1155001 chr3L_1155001 RAL-361 1522 chr3L 1166972 1166985 chr3L 1167099 1167112 7 127 13.0 4.0 8.5 0.7 140 chr3L 1166972 intron bab2 - chr3L 1167042 intron bab2 - chr3L 1167112 intron bab2 - chr3L_7_1165001 chr3L_1165001 RAL-361 1523 chr3L 1219554 1219614 chr3L 1227327 1227397 412 26 7776 7.0 8.0 7.5 3.1 7843 chr3L 1219554 intron mwh + chr3L 1223476 intron mwh + chr3L 1227397 intron mwh + chr3L_26_1220001 chr3L_1220001 RAL-361 1524 chr3L 1310990 1311051 chr3L 1315801 1315871 32 4817 54.0 75.0 64.5 0.5 4881 chr3L 1310990 exon CG2469 + chr3L 1313430 intergenic CG9186 -,CG9153 + chr3L 1315871 exon CG9153 + chr3L_32_1310001 chr3L_1310001 RAL-361 1525 chr3L 1374391 1374397 chr3L 1374518 1374524 4 127 16.5 7.0 11.8 0.3 133 chr3L 1374391 intron,intron Ptp61F -,ru + chr3L 1374458 intron,intron Ptp61F -,ru + chr3L 1374524 intron,intron Ptp61F -,ru + chr3L_4_1370001 chr3L_1370001 RAL-361 1526 chr3L 1396699 1396758 chr3L 1396827 1396892 24 130 10.5 13.5 12.0 1.8 193 chr3L 1396699 intron Ptp61F - chr3L 1396796 intron Ptp61F - chr3L 1396892 intron Ptp61F - chr3L_24_1395001 chr3L_1395001 RAL-361 1527 chr3L 1415725 1415807 chr3L 1415857 1415914 28 124 8.5 9.0 8.8 2.9 189 chr3L 1415725 intron Ptp61F - chr3L 1415820 intron Ptp61F - chr3L 1415914 intron Ptp61F - chr3L_28_1415001 chr3L_1415001 RAL-361 1528 chr3L 1424756 1424773 chr3L 1430026 1430065 Rt1a 7 5284 0.5 10.0 5.2 1.1 5309 chr3L 1424756 intron Ptp61F - chr3L 1427410 intron Ptp61F - chr3L 1430065 intron Ptp61F - chr3L_7_1425001 chr3L_1425001 RAL-361 1529 chr3L 1454197 1454264 chr3L 1454324 1454391 29 127 17.5 14.0 15.8 1.7 194 chr3L 1454197 intron Ptp61F - chr3L 1454294 intron Ptp61F - chr3L 1454391 intron Ptp61F - chr3L_29_1450001 chr3L_1450001 RAL-361 1530 chr3L 1463372 1463397 chr3L 1463503 1463528 12 130 0.0 3.5 1.8 4.3 156 chr3L 1463372 intron Ptp61F - chr3L 1463450 intron Ptp61F - chr3L 1463528 intron Ptp61F - chr3L_12_1460001 chr3L_1460001 RAL-361 1531 chr3L 1463406 1463444 chr3L 1463496 1463571 18 118 0.0 3.0 1.5 7.2 165 chr3L 1463406 intron Ptp61F - chr3L 1463488 intron Ptp61F - chr3L 1463571 intron Ptp61F - chr3L_18_1460001 chr3L_1460001 RAL-361 1532 chr3L 1477347 1477367 chr3L 1477487 1477507 8 140 3.0 0.0 1.5 3.2 160 chr3L 1477347 intron stet - chr3L 1477427 intron stet - chr3L 1477507 intron stet - chr3L_8_1475001 chr3L_1475001 RAL-361 1533 chr3L 1485689 1485733 chr3L 1486910 1486954 1360 16 1217 11.0 11.5 11.2 1.3 1265 chr3L 1485689 intron stet - chr3L 1486322 intron stet - chr3L 1486954 intron stet - chr3L_16_1485001 chr3L_1485001 RAL-361 1534 chr3L 1505959 1506021 chr3L 1513606 1513668 17.6 33 7646 13.5 12.0 12.8 2.4 7709 chr3L 1505959 intron,intron Psa +,cue - chr3L 1509814 intron,intron Psa +,cue - chr3L 1513668 intron,intron Psa +,cue - chr3L_33_1505001 chr3L_1505001 RAL-361 1535 chr3L 1536807 1536885 chr3L 1536941 1537019 27 133 5.0 8.0 6.5 3.6 212 chr3L 1536807 5` UTR CG12091 - chr3L 1536913 intergenic CG12091 -,CG7852 + chr3L 1537019 intergenic CG7852 +,CG12091 - chr3L_27_1535001 chr3L_1535001 RAL-361 1536 chr3L 1571194 1571488 chr3L 1571325 1571624 48 132 6.5 10.0 8.2 5.2 430 chr3L 1571194 intron CG12004 + chr3L 1571409 intron CG12004 + chr3L 1571624 intron CG12004 + chr3L_48_1570001 chr3L_1570001 RAL-361 1537 chr3L 1584107 1584123 chr3L 1584234 1584255 11 131 0.0 14.5 7.2 1.3 148 chr3L 1584107 intron CG13917 + chr3L 1584181 intron CG13917 + chr3L 1584255 intron CG13917 + chr3L_11_1580001 chr3L_1580001 RAL-361 1538 chr3L 1585883 1585937 chr3L 1586014 1586068 19 130 9.5 0.5 5.0 3.2 185 chr3L 1585883 intron CG13917 + chr3L 1585976 intron CG13917 + chr3L 1586068 intron CG13917 + chr3L_19_1585001 chr3L_1585001 RAL-361 1539 chr3L 1600579 1600591 chr3L 1605208 1605280 15 4645 57.5 41.5 49.5 0.3 4701 chr3L 1600579 3` UTR CG13917 + chr3L 1602930 intergenic CG18170 +,CG33791 +,CG12104 - chr3L 1605280 3` UTR,exon CG18170 +,CG33791 + chr3L_15_1600001 chr3L_1600001 RAL-361 1540 chr3L 1639167 1639240 chr3L 1639398 1639471 14 231 6.0 8.0 7.0 1.8 304 chr3L 1639167 5` UTR metl - chr3L 1639319 intergenic metl -,Bgb + chr3L 1639471 intergenic metl -,Bgb + chr3L_14_1635001 chr3L_1635001 RAL-361 1541 chr3L 1683974 1684029 chr3L 1684101 1684125 14 118 7.0 4.0 5.5 2.2 151 chr3L 1683974 intron CG7991 + chr3L 1684050 intron CG7991 + chr3L 1684125 intron CG7991 + chr3L_14_1680001 chr3L_1680001 RAL-361 1542 chr3L 1684031 1684033 chr3L 1684099 1684150 4 92 6.5 3.0 4.8 0.7 119 chr3L 1684031 intron CG7991 + chr3L 1684090 intron CG7991 + chr3L 1684150 intron CG7991 + chr3L_4_1680001 chr3L_1680001 RAL-361 1543 chr3L 1688413 1688438 chr3L 1688549 1688574 14 136 5.0 9.5 7.2 1.7 161 chr3L 1688413 intron CG7991 + chr3L 1688494 intron CG7991 + chr3L 1688574 intron CG7991 + chr3L_14_1685001 chr3L_1685001 RAL-361 1544 chr3L 1728482 1728549 chr3L 1728617 1728684 33 134 8.0 12.5 10.2 2.9 202 chr3L 1728482 intron drpr - chr3L 1728583 intron drpr - chr3L 1728684 intron drpr - chr3L_33_1725001 chr3L_1725001 RAL-361 1545 chr3L 1740821 1740830 chr3L 1741114 1741123 pogo 4 293 16.5 13.5 15.0 0.2 302 chr3L 1740821 intron Gk + chr3L 1740972 intron Gk + chr3L 1741123 intron Gk + chr3L_4_1740001 chr3L_1740001 RAL-361 1546 chr3L 1740833 1740875 chr3L 1741109 1741166 pogo 18 290 10.5 13.0 11.8 1.4 333 chr3L 1740833 intron Gk + chr3L 1741000 intron Gk + chr3L 1741166 intron Gk + chr3L_18_1740001 chr3L_1740001 RAL-361 1547 chr3L 1754645 1754719 chr3L 1754814 1754865 30 166 7.5 7.0 7.2 3.7 220 chr3L 1754645 intron Cht2 - chr3L 1754755 intron Cht2 - chr3L 1754865 intron Cht2 - chr3L_30_1750001 chr3L_1750001 RAL-361 1548 chr3L 1821597 1821646 chr3L 1821729 1821778 21 132 11.0 10.5 10.8 1.8 181 chr3L 1821597 intron GV1 + chr3L 1821688 intron GV1 + chr3L 1821778 intron GV1 + chr3L_21_1820001 chr3L_1820001 RAL-361 1549 chr3L 1853003 1853054 chr3L 1853137 1853188 24 134 8.0 6.0 7.0 3.0 185 chr3L 1853003 intron CG13936 - chr3L 1853096 intron CG13936 - chr3L 1853188 intron CG13936 - chr3L_24_1850001 chr3L_1850001 RAL-361 1550 chr3L 1905318 1905356 chr3L 1905462 1905500 11 144 12.0 15.0 13.5 0.8 182 chr3L 1905318 intron CG1887 - chr3L 1905409 intron CG1887 - chr3L 1905500 intron CG1887 - chr3L_11_1905001 chr3L_1905001 RAL-361 1551 chr3L 1922399 1922439 chr3L 1922527 1922569 7 128 12.5 8.0 10.2 0.6 170 chr3L 1922399 intron Dbx + chr3L 1922484 intron Dbx + chr3L 1922569 intron Dbx + chr3L_7_1920001 chr3L_1920001 RAL-361 1552 chr3L 1925046 1925107 chr3L 1925182 1925244 11 135 0.0 8.5 4.2 2.1 198 chr3L 1925046 intron Dbx + chr3L 1925145 intron Dbx + chr3L 1925244 intron Dbx + chr3L_11_1925001 chr3L_1925001 RAL-361 1553 chr3L 2108218 2108277 chr3L 2113467 2113531 copia 23 5254 6.0 5.0 5.5 3.5 5313 chr3L 2108218 intron sls - chr3L 2110874 intron sls - chr3L 2113531 intron sls - chr3L_23_2110001 chr3L_2110001 RAL-361 1554 chr3L 2139162 2139234 chr3L 2139293 2139365 31 129 8.5 8.5 8.5 3.3 203 chr3L 2139162 intron zormin - chr3L 2139264 intron zormin - chr3L 2139365 intron zormin - chr3L_31_2135001 chr3L_2135001 RAL-361 1555 chr3L 2168731 2168800 chr3L 2168872 2168941 26 141 3.5 10.5 7.0 3.2 210 chr3L 2168731 exon CG15879 - chr3L 2168836 intron CG15879 - chr3L 2168941 intron CG15879 - chr3L_26_2165001 chr3L_2165001 RAL-361 1556 chr3L 2176642 2176716 chr3L 2177101 2177155 41 455 9.5 10.0 9.8 3.8 513 chr3L 2176642 intergenic not near genes chr3L 2176898 intergenic not near genes chr3L 2177155 intergenic not near genes chr3L_41_2175001 chr3L_2175001 RAL-361 1557 chr3L 2199783 2199820 chr3L 2199909 2199946 19 125 5.0 14.5 9.8 1.8 163 chr3L 2199783 intergenic not near genes chr3L 2199864 intergenic not near genes chr3L 2199946 intergenic not near genes chr3L_19_2195001 chr3L_2195001 RAL-361 1558 chr3L 2278988 2279066 chr3L 2279189 2279263 21 198 0.5 5.5 3.0 5.2 275 chr3L 2278988 intergenic not near genes chr3L 2279126 intergenic not near genes chr3L 2279263 intergenic not near genes chr3L_21_2275001 chr3L_2275001 RAL-361 1559 chr3L 2307955 2308025 chr3L 2308111 2308181 32 155 9.0 10.0 9.5 3.0 226 chr3L 2307955 intergenic not near genes chr3L 2308068 intergenic not near genes chr3L 2308181 intergenic not near genes chr3L_32_2305001 chr3L_2305001 RAL-361 1560 chr3L 2330723 2330775 chr3L 2330851 2330903 22 127 16.0 3.5 9.8 2.0 180 chr3L 2330723 intron MsR1 + chr3L 2330813 intron MsR1 + chr3L 2330903 intron MsR1 + chr3L_22_2330001 chr3L_2330001 RAL-361 1561 chr3L 2342510 2342515 chr3L 2342637 2342642 4 127 0.0 8.5 4.2 0.8 132 chr3L 2342510 intron MsR1 + chr3L 2342576 intron MsR1 + chr3L 2342642 intron MsR1 + chr3L_4_2340001 chr3L_2340001 RAL-361 1562 chr3L 2355400 2355465 chr3L 2355638 2355702 19 237 5.5 0.0 2.8 5.0 302 chr3L 2355400 intergenic not near genes chr3L 2355551 intergenic not near genes chr3L 2355702 intergenic not near genes chr3L_19_2355001 chr3L_2355001 RAL-361 1563 chr3L 2411295 2411308 chr3L 2411425 2411438 5 130 4.5 10.0 7.2 0.6 143 chr3L 2411295 intron CG45186 + chr3L 2411366 intron CG45186 + chr3L 2411438 intron CG45186 + chr3L_5_2410001 chr3L_2410001 RAL-361 1564 chr3L 2411309 2411343 chr3L 2411423 2411455 18 125 1.5 10.0 5.8 2.6 146 chr3L 2411309 intron CG45186 + chr3L 2411382 intron CG45186 + chr3L 2411455 intron CG45186 + chr3L_18_2410001 chr3L_2410001 RAL-361 1565 chr3L 2447460 2447530 chr3L 2456666 2456731 roo 29 9200 6.0 11.0 8.5 3.1 9271 chr3L 2447460 intron CG45186 + chr3L 2452096 intron CG45186 + chr3L 2456731 intron CG45186 + chr3L_29_2450001 chr3L_2450001 RAL-361 1566 chr3L 2467447 2467483 chr3L 2467594 2467639 8 153 7.5 2.0 4.8 1.4 192 chr3L 2467447 intron CG45186 + chr3L 2467543 intron CG45186 + chr3L 2467639 intron CG45186 + chr3L_8_2465001 chr3L_2465001 RAL-361 1567 chr3L 2483102 2483127 chr3L 2483231 2483255 9 127 16.5 12.5 14.5 0.6 153 chr3L 2483102 intron CG45186 + chr3L 2483178 intron CG45186 + chr3L 2483255 intron CG45186 + chr3L_9_2480001 chr3L_2480001 RAL-361 1568 chr3L 2483133 2483162 chr3L 2483229 2483291 12 123 9.0 11.5 10.2 1.1 158 chr3L 2483133 intron CG45186 + chr3L 2483212 intron CG45186 + chr3L 2483291 intron CG45186 + chr3L_12_2480001 chr3L_2480001 RAL-361 1569 chr3L 2493773 2493842 chr3L 2493901 2493980 17 136 6.0 0.0 3.0 4.2 207 chr3L 2493773 intron CG45186 + chr3L 2493876 intron CG45186 + chr3L 2493980 intron CG45186 + chr3L_17_2490001 chr3L_2490001 RAL-361 1570 chr3L 2540613 2540676 chr3L 2540734 2540811 28 133 5.0 6.5 5.8 4.1 198 chr3L 2540613 intron Spn - chr3L 2540712 intron Spn - chr3L 2540811 intron Spn - chr3L_28_2540001 chr3L_2540001 RAL-361 1571 chr3L 2575971 2575984 chr3L 2576104 2576117 5 133 14.5 8.5 11.5 0.4 146 chr3L 2575971 intron msn - chr3L 2576044 intron msn - chr3L 2576117 intron msn - chr3L_5_2575001 chr3L_2575001 RAL-361 1572 chr3L 2578411 2578435 chr3L 2578546 2578560 7 130 15.5 8.5 12.0 0.5 149 chr3L 2578411 intron msn - chr3L 2578486 intron msn - chr3L 2578560 intron msn - chr3L_7_2575001 chr3L_2575001 RAL-361 1573 chr3L 2581850 2581915 chr3L 2581994 2582059 28 143 9.0 6.5 7.8 3.2 209 chr3L 2581850 intron msn - chr3L 2581954 intron msn - chr3L 2582059 intron msn - chr3L_28_2580001 chr3L_2580001 RAL-361 1574 chr3L 2609628 2609658 chr3L 2609754 2609762 12 124 17.5 0.0 8.8 1.2 134 chr3L 2609628 intron Pxn - chr3L 2609695 intron Pxn - chr3L 2609762 intron Pxn - chr3L_12_2605001 chr3L_2605001 RAL-361 1575 chr3L 2626062 2626100 chr3L 2626213 2626251 13 150 8.0 9.0 8.5 1.4 189 chr3L 2626062 intron Pxn - chr3L 2626156 intron Pxn - chr3L 2626251 intron Pxn - chr3L_13_2625001 chr3L_2625001 RAL-361 1576 chr3L 2674740 2674803 chr3L 2674856 2674934 29 129 6.0 0.5 3.2 6.9 194 chr3L 2674740 intron Fife - chr3L 2674837 intron Fife - chr3L 2674934 intron Fife - chr3L_29_2670001 chr3L_2670001 RAL-361 1577 chr3L 2680463 2680502 chr3L 2680593 2680632 24 130 14.5 0.5 7.5 2.8 169 chr3L 2680463 intron Fife - chr3L 2680548 intron Fife - chr3L 2680632 intron Fife - chr3L_24_2680001 chr3L_2680001 RAL-361 1578 chr3L 2683913 2683972 chr3L 2684039 2684101 13 126 11.0 6.5 8.8 1.3 188 chr3L 2683913 intron Fife - chr3L 2684007 intron Fife - chr3L 2684101 intron Fife - chr3L_13_2680001 chr3L_2680001 RAL-361 1579 chr3L 2713447 2713486 chr3L 2713641 2713675 19 190 10.0 10.5 10.2 1.7 228 chr3L 2713447 intergenic not near genes chr3L 2713561 intergenic not near genes chr3L 2713675 intergenic not near genes chr3L_19_2710001 chr3L_2710001 RAL-361 1580 chr3L 2713490 2713514 chr3L 2713638 2713708 10 183 9.0 9.0 9.0 1.0 218 chr3L 2713490 intergenic not near genes chr3L 2713599 intergenic not near genes chr3L 2713708 intergenic not near genes chr3L_10_2710001 chr3L_2710001 RAL-361 1581 chr3L 2719493 2719559 chr3L 2719645 2719711 28 151 9.0 7.5 8.2 3.0 218 chr3L 2719493 3` UTR Mrtf - chr3L 2719602 3` UTR Mrtf - chr3L 2719711 3` UTR Mrtf - chr3L_28_2715001 chr3L_2715001 RAL-361 1582 chr3L 2751412 2751455 chr3L 2755757 2755800 F-element 29 4345 16.5 20.0 18.2 1.5 4388 chr3L 2751412 intron Mrtf - chr3L 2753606 intron Mrtf - chr3L 2755800 intron Mrtf - chr3L_29_2750001 chr3L_2750001 RAL-361 1583 chr3L 2795674 2795745 chr3L 2795848 2795918 37 173 7.5 11.5 9.5 3.5 244 chr3L 2795674 intron CG43444 - chr3L 2795796 intron CG43444 - chr3L 2795918 intron CG43444 - chr3L_37_2795001 chr3L_2795001 RAL-361 1584 chr3L 2799028 2799108 chr3L 2799161 2799240 19 132 9.0 1.5 5.2 3.1 212 chr3L 2799028 intron CG43444 - chr3L 2799134 intron CG43444 - chr3L 2799240 intron CG43444 - chr3L_19_2795001 chr3L_2795001 RAL-361 1585 chr3L 2854443 2854464 chr3L 2854568 2854592 8 127 13.5 9.0 11.2 0.7 149 chr3L 2854443 intron CG43444 - chr3L 2854518 intron CG43444 - chr3L 2854592 intron CG43444 - chr3L_8_2850001 chr3L_2850001 RAL-361 1586 chr3L 2854474 2854503 chr3L 2854560 2854631 7 105 5.5 5.5 5.5 1.1 157 chr3L 2854474 intron CG43444 - chr3L 2854552 intron CG43444 - chr3L 2854631 intron CG43444 - chr3L_7_2850001 chr3L_2850001 RAL-361 1587 chr3L 2856248 2856308 chr3L 2856384 2856439 11 131 3.5 0.0 1.8 3.9 191 chr3L 2856248 intron CG43444 - chr3L 2856344 intron CG43444 - chr3L 2856439 intron CG43444 - chr3L_11_2855001 chr3L_2855001 RAL-361 1588 chr3L 2893238 2893267 chr3L 2893370 2893397 11 131 20.0 8.5 14.2 0.7 159 chr3L 2893238 intergenic not near genes chr3L 2893318 intergenic not near genes chr3L 2893397 intergenic not near genes chr3L_11_2890001 chr3L_2890001 RAL-361 1589 chr3L 2893268 2893294 chr3L 2893367 2893426 14 128 11.5 8.5 10.0 1.3 158 chr3L 2893268 intergenic not near genes chr3L 2893347 intergenic not near genes chr3L 2893426 intergenic not near genes chr3L_14_2890001 chr3L_2890001 RAL-361 1590 chr3L 2927791 2927864 chr3L 2936118 2936191 Tirant 27 8326 6.5 10.0 8.2 2.9 8400 chr3L 2927791 intron Shab + chr3L 2931991 intron Shab + chr3L 2936191 intron Shab + chr3L_27_2930001 chr3L_2930001 RAL-361 1591 chr3L 2966670 2966715 chr3L 2974147 2974195 mdg1 10 7478 12.0 2.0 7.0 1.2 7525 chr3L 2966670 intergenic not near genes chr3L 2970432 intergenic not near genes chr3L 2974195 intergenic not near genes chr3L_10_2970001 chr3L_2970001 RAL-361 1592 chr3L 2974271 2974343 chr3L 2974395 2974439 17 121 4.0 8.5 6.2 2.4 168 chr3L 2974271 intergenic not near genes chr3L 2974355 intergenic not near genes chr3L 2974439 intergenic not near genes chr3L_17_2970001 chr3L_2970001 RAL-361 1593 chr3L 3028302 3028368 chr3L 3028431 3028497 23 128 7.5 11.0 9.2 2.3 195 chr3L 3028302 intergenic not near genes chr3L 3028400 intergenic not near genes chr3L 3028497 intergenic not near genes chr3L_23_3025001 chr3L_3025001 RAL-361 1594 chr3L 3028959 3029024 chr3L 3029095 3029160 20 136 7.0 4.0 5.5 3.1 201 chr3L 3028959 intergenic not near genes chr3L 3029060 intergenic not near genes chr3L 3029160 intergenic not near genes chr3L_20_3025001 chr3L_3025001 RAL-361 1595 chr3L 3030959 3030968 chr3L 3031089 3031098 6 130 5.5 9.0 7.2 0.7 139 chr3L 3030959 intergenic not near genes chr3L 3031028 intergenic not near genes chr3L 3031098 intergenic not near genes chr3L_6_3030001 chr3L_3030001 RAL-361 1596 chr3L 3040290 3040351 chr3L 3042129 3042194 S-element 11 1841 8.0 0.0 4.0 2.2 1904 chr3L 3040290 3` UTR CG2162 + chr3L 3041242 intergenic not near genes chr3L 3042194 intergenic Jafrac2 + chr3L_11_3040001 chr3L_3040001 RAL-361 1597 chr3L 3050855 3050928 chr3L 3050992 3051045 29 133 10.0 4.0 7.0 3.6 190 chr3L 3050855 intron CG32485 + chr3L 3050950 intron CG32485 + chr3L 3051045 exon CG32485 + chr3L_29_3050001 chr3L_3050001 RAL-361 1598 chr3L 3051696 3051754 chr3L 3051988 3052049 pogo 26 293 15.0 6.0 10.5 2.3 353 chr3L 3051696 3` UTR CG32485 + chr3L 3051872 intergenic CG32485 + chr3L 3052049 intergenic CG32485 +,CG1271 + chr3L_26_3050001 chr3L_3050001 RAL-361 1599 chr3L 3061246 3061313 chr3L 3069873 3069900 Tirant 17 8615 4.5 6.0 5.2 2.7 8654 chr3L 3061246 intron CG32486 - chr3L 3065573 intron CG32486 - chr3L 3069900 intron CG32486 - chr3L_17_3065001 chr3L_3065001 RAL-361 1600 chr3L 3077374 3077379 chr3L 3077538 3077543 4 164 9.0 0.5 4.8 0.7 169 chr3L 3077374 intron CG11486 + chr3L 3077458 intron CG11486 + chr3L 3077543 intron CG11486 + chr3L_4_3075001 chr3L_3075001 RAL-361 1601 chr3L 3259580 3259651 chr3L 3259725 3259766 35 141 6.5 14.5 10.5 3.0 186 chr3L 3259580 intron ckd + chr3L 3259673 intron ckd + chr3L 3259766 intron ckd + chr3L_35_3255001 chr3L_3255001 RAL-361 1602 chr3L 3281402 3281434 chr3L 3281948 3281979 Doc 8 545 18.0 10.0 14.0 0.5 577 chr3L 3281402 intron CG12017 + chr3L 3281690 intron CG12017 + chr3L 3281979 intron CG12017 + chr3L_8_3280001 chr3L_3280001 RAL-361 1603 chr3L 3281435 3281474 chr3L 3281935 3281984 Doc 19 527 8.0 8.5 8.2 2.1 549 chr3L 3281435 intron CG12017 + chr3L 3281710 intron CG12017 + chr3L 3281984 intron CG12017 + chr3L_19_3280001 chr3L_3280001 RAL-361 1604 chr3L 3317507 3317557 chr3L 3317636 3317686 18 129 0.0 14.0 7.0 2.2 179 chr3L 3317507 intergenic Drsl5 + chr3L 3317596 intergenic PIG-C -,Drsl5 + chr3L 3317686 intergenic PIG-C - chr3L_18_3315001 chr3L_3315001 RAL-361 1605 chr3L 3436246 3436316 chr3L 3436375 3436445 38 129 8.0 6.5 7.2 4.6 199 chr3L 3436246 intron eIF5B - chr3L 3436346 intron eIF5B - chr3L 3436445 intron eIF5B - chr3L_38_3435001 chr3L_3435001 RAL-361 1606 chr3L 3449215 3449232 chr3L 3449343 3449350 11 127 9.5 6.5 8.0 1.2 135 chr3L 3449215 intron eIF5B - chr3L 3449282 intron eIF5B - chr3L 3449350 intron eIF5B - chr3L_11_3445001 chr3L_3445001 RAL-361 1607 chr3L 3470127 3470182 chr3L 3470253 3470308 19 126 4.5 10.5 7.5 2.2 181 chr3L 3470127 intron CG14971 - chr3L 3470218 intron CG14971 - chr3L 3470308 intron CG14971 - chr3L_19_3470001 chr3L_3470001 RAL-361 1608 chr3L 3475037 3475045 chr3L 3475531 3475539 jockey 6 494 29.5 8.5 19.0 0.3 502 chr3L 3475037 intron CG42324 + chr3L 3475288 intron CG42324 + chr3L 3475539 intron CG42324 + chr3L_6_3475001 chr3L_3475001 RAL-361 1609 chr3L 3475057 3475065 chr3L 3475526 3475550 jockey 10 488 24.0 8.0 16.0 0.6 493 chr3L 3475057 intron CG42324 + chr3L 3475304 intron CG42324 + chr3L 3475550 intron CG42324 + chr3L_10_3475001 chr3L_3475001 RAL-361 1610 chr3L 3513015 3513089 chr3L 3513143 3513216 18 128 6.5 5.0 5.8 2.6 201 chr3L 3513015 intergenic ImpE2 - chr3L 3513116 intergenic ImpE2 - chr3L 3513216 intergenic not near genes chr3L_18_3510001 chr3L_3510001 RAL-361 1611 chr3L 3516258 3516318 chr3L 3516386 3516447 11 128 5.5 11.0 8.2 1.2 189 chr3L 3516258 intron Eip63E + chr3L 3516352 intron Eip63E + chr3L 3516447 intron Eip63E + chr3L_11_3515001 chr3L_3515001 RAL-361 1612 chr3L 3533682 3533714 chr3L 3536966 3537039 29 3288 61.5 71.5 66.5 0.4 3357 chr3L 3533682 intron Eip63E + chr3L 3535360 intron Eip63E + chr3L 3537039 intron Eip63E + chr3L_29_3535001 chr3L_3535001 RAL-361 1613 chr3L 3539907 3539989 chr3L 3540046 3540122 22 138 6.0 2.0 4.0 4.4 215 chr3L 3539907 intron Eip63E + chr3L 3540014 intron Eip63E + chr3L 3540122 intron Eip63E + chr3L_22_3540001 chr3L_3540001 RAL-361 1614 chr3L 3565892 3565920 chr3L 3566018 3566037 12 125 16.0 7.5 11.8 0.9 145 chr3L 3565892 intron Eip63E + chr3L 3565964 intron Eip63E + chr3L 3566037 intron Eip63E + chr3L_12_3565001 chr3L_3565001 RAL-361 1615 chr3L 3565936 3565961 chr3L 3566015 3566077 11 114 4.5 7.0 5.8 1.6 141 chr3L 3565936 intron Eip63E + chr3L 3566006 intron Eip63E + chr3L 3566077 intron Eip63E + chr3L_11_3565001 chr3L_3565001 RAL-361 1616 chr3L 3581698 3581765 chr3L 3581831 3581900 18 132 8.0 0.0 4.0 3.6 202 chr3L 3581698 intron Eip63E + chr3L 3581799 intron Eip63E + chr3L 3581900 intron Eip63E + chr3L_18_3580001 chr3L_3580001 RAL-361 1617 chr3L 3587104 3587174 chr3L 3587388 3587459 32 285 8.5 11.0 9.8 3.0 355 chr3L 3587104 intron Eip63E + chr3L 3587282 intron Eip63E + chr3L 3587459 intron Eip63E + chr3L_32_3585001 chr3L_3585001 RAL-361 1618 chr3L 3601258 3601330 chr3L 3606619 3606668 copia 37 5358 6.5 12.5 9.5 3.5 5410 chr3L 3601258 intron Eip63E + chr3L 3603963 intron Eip63E + chr3L 3606668 intron Eip63E + chr3L_37_3600001 chr3L_3600001 RAL-361 1619 chr3L 3616445 3616522 chr3L 3616578 3616656 31 130 5.5 8.0 6.8 4.0 211 chr3L 3616445 intron CG10357 + chr3L 3616550 3` UTR CG10357 + chr3L 3616656 3` UTR CG10357 + chr3L_31_3615001 chr3L_3615001 RAL-361 1620 chr3L 3622277 3622298 chr3L 3622406 3622427 8 129 15.5 2.5 9.0 0.8 150 chr3L 3622277 intergenic not near genes chr3L 3622352 intergenic not near genes chr3L 3622427 intergenic not near genes chr3L_8_3620001 chr3L_3620001 RAL-361 1621 chr3L 3691258 3691274 chr3L 3691406 3691422 8 148 8.0 0.0 4.0 1.6 164 chr3L 3691258 intergenic not near genes chr3L 3691340 intergenic not near genes chr3L 3691422 intergenic not near genes chr3L_8_3690001 chr3L_3690001 RAL-361 1622 chr3L 3753222 3753285 chr3L 3753365 3753428 21 140 4.5 8.5 6.5 2.8 206 chr3L 3753222 intron CG32264 - chr3L 3753325 intron CG32264 - chr3L 3753428 intron CG32264 - chr3L_21_3750001 chr3L_3750001 RAL-361 1623 chr3L 3763721 3763724 chr3L 3763851 3763855 4 131 12.0 0.0 6.0 0.6 134 chr3L 3763721 intron CG32264 - chr3L 3763788 intron CG32264 - chr3L 3763855 intron CG32264 - chr3L_4_3760001 chr3L_3760001 RAL-361 1624 chr3L 3766687 3766715 chr3L 3766823 3766851 14 136 14.0 0.0 7.0 1.8 164 chr3L 3766687 intron CG32264 - chr3L 3766769 intron CG32264 - chr3L 3766851 intron CG32264 - chr3L_14_3765001 chr3L_3765001 RAL-361 1625 chr3L 3771897 3771922 chr3L 3772025 3772050 6 126 7.5 12.0 9.8 0.6 153 chr3L 3771897 intron CG32264 - chr3L 3771974 intron CG32264 - chr3L 3772050 intron CG32264 - chr3L_6_3770001 chr3L_3770001 RAL-361 1626 chr3L 3783220 3783284 chr3L 3783347 3783411 19 127 6.5 7.5 7.0 2.4 191 chr3L 3783220 intron CG32264 - chr3L 3783316 intron CG32264 - chr3L 3783411 intron CG32264 - chr3L_19_3780001 chr3L_3780001 RAL-361 1627 chr3L 3815001 3815082 chr3L 3815132 3815213 16 131 6.0 4.5 5.2 2.6 212 chr3L 3815001 intron,3` UTR Scsalpha +,CR43932 - chr3L 3815107 intron,3` UTR Scsalpha +,CR43932 - chr3L 3815213 intron,3` UTR Scsalpha +,CR43932 - chr3L_16_3815001 chr3L_3815001 RAL-361 1628 chr3L 3833697 3833763 chr3L 3833988 3834054 pogo 25 291 8.0 10.5 9.2 2.5 357 chr3L 3833697 intron enc + chr3L 3833876 intron enc + chr3L 3834054 intron enc + chr3L_25_3830001 chr3L_3830001 RAL-361 1629 chr3L 3877425 3877467 chr3L 3877598 3877640 15 171 3.0 11.0 7.0 1.9 215 chr3L 3877425 intergenic not near genes chr3L 3877532 intergenic not near genes chr3L 3877640 intergenic not near genes chr3L_15_3875001 chr3L_3875001 RAL-361 1630 chr3L 3912456 3912483 chr3L 3912582 3912609 12 126 13.5 14.5 14.0 0.8 153 chr3L 3912456 intron Eip63F-1 - chr3L 3912532 intron Eip63F-1 - chr3L 3912609 intron Eip63F-1 - chr3L_12_3910001 chr3L_3910001 RAL-361 1631 chr3L 3935807 3935843 chr3L 3935935 3935971 16 128 0.0 0.5 0.2 13.3 164 chr3L 3935807 5` UTR Eip63F-2 + chr3L 3935889 5` UTR Eip63F-2 + chr3L 3935971 5` UTR Eip63F-2 + chr3L_16_3935001 chr3L_3935001 RAL-361 1632 chr3L 3946142 3946218 chr3L 3946269 3946345 26 126 9.5 8.0 8.8 2.7 203 chr3L 3946142 exon CG14982 + chr3L 3946244 3` UTR CG14982 + chr3L 3946345 3` UTR CG14982 + chr3L_26_3945001 chr3L_3945001 RAL-361 1633 chr3L 4072101 4072160 chr3L 4074671 4074745 27 2572 64.0 53.5 58.8 0.5 2644 chr3L 4072101 exon Faa - chr3L 4073423 intron Faa - chr3L 4074745 3` UTR Gad1 - chr3L_27_4070001 chr3L_4070001 RAL-361 1634 chr3L 4164750 4164792 chr3L 4164876 4164918 12 126 10.0 5.5 7.8 1.4 168 chr3L 4164750 exon mas - chr3L 4164834 intron mas - chr3L 4164918 exon mas - chr3L_12_4160001 chr3L_4160001 RAL-361 1635 chr3L 4170104 4170167 chr3L 4170231 4170295 15 127 5.0 8.0 6.5 2.0 191 chr3L 4170104 intergenic Ero1L + chr3L 4170200 intergenic Ero1L + chr3L 4170295 intergenic Ero1L + chr3L_15_4170001 chr3L_4170001 RAL-361 1636 chr3L 4214485 4214546 chr3L 4214677 4214738 26 191 10.0 13.5 11.8 2.0 253 chr3L 4214485 intron CG43367 + chr3L 4214612 intron CG43367 + chr3L 4214738 intron CG43367 + chr3L_26_4210001 chr3L_4210001 RAL-361 1637 chr3L 4328700 4328756 chr3L 4336248 4336304 412 35 7547 3.5 14.0 8.8 3.6 7604 chr3L 4328700 intron Cip4 - chr3L 4332502 intron Cip4 - chr3L 4336304 exon Cip4 - chr3L_35_4330001 chr3L_4330001 RAL-361 1638 chr3L 4361017 4361026 chr3L 4362914 4362932 6 1904 0.0 12.0 6.0 0.9 1915 chr3L 4361017 intron Cip4 - chr3L 4361974 intron Cip4 - chr3L 4362932 intron Cip4 - chr3L_6_4360001 chr3L_4360001 RAL-361 1639 chr3L 4364147 4364223 chr3L 4364286 4364362 13 139 4.0 6.0 5.0 2.2 215 chr3L 4364147 intergenic Cip4 -,mRpS6 + chr3L 4364254 intergenic Cip4 -,mRpS6 + chr3L 4364362 intergenic mRpS6 +,Cip4 - chr3L_13_4360001 chr3L_4360001 RAL-361 1640 chr3L 4383140 4383193 chr3L 4383326 4383379 21 185 8.5 6.5 7.5 2.5 239 chr3L 4383140 intergenic not near genes chr3L 4383260 intergenic not near genes chr3L 4383379 intergenic not near genes chr3L_21_4380001 chr3L_4380001 RAL-361 1641 chr3L 4580262 4580323 chr3L 4580398 4580459 32 135 7.5 9.5 8.5 3.4 197 chr3L 4580262 intron CG42540 + chr3L 4580360 intron CG42540 + chr3L 4580459 intron CG42540 + chr3L_32_4580001 chr3L_4580001 RAL-361 1642 chr3L 4604822 4604893 chr3L 4604982 4605036 25 158 7.0 11.0 9.0 2.5 214 chr3L 4604822 intron Src64B - chr3L 4604929 intron Src64B - chr3L 4605036 intron Src64B - chr3L_25_4600001 chr3L_4600001 RAL-361 1643 chr3L 4647087 4647156 chr3L 4647222 4647290 15 134 0.0 11.5 5.8 2.2 203 chr3L 4647087 intron axo - chr3L 4647188 intron axo - chr3L 4647290 intron axo - chr3L_15_4645001 chr3L_4645001 RAL-361 1644 chr3L 4654172 4654215 chr3L 4654271 4654347 19 128 7.0 12.5 9.8 1.8 175 chr3L 4654172 intron axo - chr3L 4654260 intron axo - chr3L 4654347 intron axo - chr3L_19_4650001 chr3L_4650001 RAL-361 1645 chr3L 4685513 4685590 chr3L 4685937 4686002 23 424 5.0 5.0 5.0 3.8 489 chr3L 4685513 intron axo - chr3L 4685758 intron axo - chr3L 4686002 intron axo - chr3L_23_4685001 chr3L_4685001 RAL-361 1646 chr3L 4700749 4700768 chr3L 4700895 4700912 12 144 12.0 0.0 6.0 1.7 163 chr3L 4700749 intron RhoGEF64C + chr3L 4700830 intron RhoGEF64C + chr3L 4700912 intron RhoGEF64C + chr3L_12_4700001 chr3L_4700001 RAL-361 1647 chr3L 4714553 4714619 chr3L 4714681 4714746 24 128 6.0 7.5 6.8 3.1 193 chr3L 4714553 intron RhoGEF64C + chr3L 4714650 intron RhoGEF64C + chr3L 4714746 intron RhoGEF64C + chr3L_24_4710001 chr3L_4710001 RAL-361 1648 chr3L 4858262 4858314 chr3L 4858402 4858454 19 137 15.5 8.5 12.0 1.5 192 chr3L 4858262 intergenic not near genes chr3L 4858358 intergenic not near genes chr3L 4858454 intergenic not near genes chr3L_19_4855001 chr3L_4855001 RAL-361 1649 chr3L 4858315 4858332 chr3L 4858392 4858422 10 124 9.0 7.5 8.2 1.1 107 chr3L 4858315 intergenic not near genes chr3L 4858368 intergenic not near genes chr3L 4858422 intergenic not near genes chr3L_10_4855001 chr3L_4855001 RAL-361 1650 chr3L 4901090 4901154 chr3L 4907330 4907394 diver 14 6240 7.0 6.0 6.5 1.9 6304 chr3L 4901090 intergenic CG13704 + chr3L 4904242 intergenic not near genes chr3L 4907394 intergenic not near genes chr3L_14_4900001 chr3L_4900001 RAL-361 1651 chr3L 4920159 4920217 chr3L 4920287 4920345 4 128 0.0 5.5 2.8 1.1 186 chr3L 4920159 3` UTR Rh50 + chr3L 4920252 intergenic Rh50 + chr3L 4920345 intergenic Rh50 + chr3L_4_4920001 chr3L_4920001 RAL-361 1652 chr3L 5017881 5017933 chr3L 5018009 5018035 14 124 8.5 6.5 7.5 1.6 154 chr3L 5017881 intron Con - chr3L 5017958 intron Con - chr3L 5018035 intron Con - chr3L_14_5015001 chr3L_5015001 RAL-361 1653 chr3L 5034110 5034190 chr3L 5043312 5043392 roo 21 9202 5.0 4.0 4.5 3.8 9282 chr3L 5034110 intron Con - chr3L 5038751 intron Con - chr3L 5043392 intron Con - chr3L_21_5035001 chr3L_5035001 RAL-361 1654 chr3L 5045416 5045475 chr3L 5050247 5050306 Doc 24 4831 11.0 11.0 11.0 2.0 4890 chr3L 5045416 5` UTR Con - chr3L 5047861 intron Con - chr3L 5050306 intron Con - chr3L_24_5045001 chr3L_5045001 RAL-361 1655 chr3L 5066251 5066313 chr3L 5066399 5066462 15 149 8.0 6.5 7.2 1.8 211 chr3L 5066251 intron Con - chr3L 5066356 intron Con - chr3L 5066462 intron Con - chr3L_15_5065001 chr3L_5065001 RAL-361 1656 chr3L 5104461 5104512 chr3L 5124645 5124696 14 20184 0.0 15.5 7.8 1.6 20235 chr3L 5104461 intergenic not near genes chr3L 5114578 intergenic not near genes chr3L 5124696 intergenic not near genes chr3L_14_5110001 chr3L_5110001 RAL-361 1657 chr3L 5219755 5219832 chr3L 5220110 5220186 32 354 12.5 4.5 8.5 3.4 431 chr3L 5219755 intron shep - chr3L 5219970 intron shep - chr3L 5220186 intron shep - chr3L_32_5215001 chr3L_5215001 RAL-361 1658 chr3L 5223373 5223448 chr3L 5223505 5223536 17 126 4.5 10.5 7.5 2.0 163 chr3L 5223373 intron shep - chr3L 5223454 intron shep - chr3L 5223536 intron shep - chr3L_17_5220001 chr3L_5220001 RAL-361 1659 chr3L 5225015 5225062 chr3L 5225177 5225226 6 163 4.5 0.0 2.2 1.9 211 chr3L 5225015 intron shep - chr3L 5225120 intron shep - chr3L 5225226 intron shep - chr3L_6_5225001 chr3L_5225001 RAL-361 1660 chr3L 5261116 5261182 chr3L 5261245 5261311 23 129 10.0 7.0 8.5 2.4 195 chr3L 5261116 intron shep - chr3L 5261214 intron shep - chr3L 5261311 intron shep - chr3L_23_5260001 chr3L_5260001 RAL-361 1661 chr3L 5263386 5263463 chr3L 5263520 5263598 15 134 5.0 3.5 4.2 2.9 212 chr3L 5263386 intron shep - chr3L 5263492 intron shep - chr3L 5263598 intron shep - chr3L_15_5260001 chr3L_5260001 RAL-361 1662 chr3L 5271156 5271194 chr3L 5271274 5271282 5 114 0.0 0.0 0.0 5.0 126 chr3L 5271156 intron shep - chr3L 5271219 intron shep - chr3L 5271282 intron shep - chr3L_5_5270001 chr3L_5270001 RAL-361 1663 chr3L 5299114 5299171 chr3L 5306600 5306657 Quasimodo 24 7485 12.0 9.5 10.8 2.0 7543 chr3L 5299114 intergenic not near genes chr3L 5302886 intergenic not near genes chr3L 5306657 intergenic not near genes chr3L_24_5300001 chr3L_5300001 RAL-361 1664 chr3L 5327416 5327478 chr3L 5327551 5327613 23 135 7.5 7.5 7.5 2.7 197 chr3L 5327416 intergenic not near genes chr3L 5327514 intergenic not near genes chr3L 5327613 intergenic not near genes chr3L_23_5325001 chr3L_5325001 RAL-361 1665 chr3L 5351055 5351132 chr3L 5351190 5351267 29 133 4.5 10.5 7.5 3.4 212 chr3L 5351055 intron lama - chr3L 5351161 intron lama - chr3L 5351267 intron lama - chr3L_29_5350001 chr3L_5350001 RAL-361 1666 chr3L 5384268 5384340 chr3L 5384398 5384470 31 123 9.5 8.0 8.8 3.2 202 chr3L 5384268 intergenic not near genes chr3L 5384369 intergenic not near genes chr3L 5384470 intergenic not near genes chr3L_31_5380001 chr3L_5380001 RAL-361 1667 chr3L 5388160 5388174 chr3L 5388534 5388548 8 373 12.5 10.0 11.2 0.7 388 chr3L 5388160 intergenic not near genes chr3L 5388354 intergenic not near genes chr3L 5388548 intergenic not near genes chr3L_8_5385001 chr3L_5385001 RAL-361 1668 chr3L 5388176 5388230 chr3L 5388524 5388585 19 372 5.0 8.5 6.8 2.4 409 chr3L 5388176 intergenic not near genes chr3L 5388380 intergenic not near genes chr3L 5388585 intergenic not near genes chr3L_19_5385001 chr3L_5385001 RAL-361 1669 chr3L 5393427 5393474 chr3L 5393639 5393686 11 212 8.5 4.5 6.5 1.5 259 chr3L 5393427 intergenic not near genes chr3L 5393556 intergenic not near genes chr3L 5393686 intergenic not near genes chr3L_11_5390001 chr3L_5390001 RAL-361 1670 chr3L 5396418 5396442 chr3L 5396554 5396578 10 136 4.5 0.0 2.2 3.1 160 chr3L 5396418 intergenic not near genes chr3L 5396498 intergenic not near genes chr3L 5396578 intergenic not near genes chr3L_10_5395001 chr3L_5395001 RAL-361 1671 chr3L 5458065 5458091 chr3L 5466717 5466743 Max-element 8 8651 7.5 18.5 13.0 0.6 8678 chr3L 5458065 intergenic not near genes chr3L 5462404 intergenic not near genes chr3L 5466743 intergenic not near genes chr3L_8_5460001 chr3L_5460001 RAL-361 1672 chr3L 5493751 5493761 chr3L 5493882 5493892 7 131 21.0 11.0 16.0 0.4 141 chr3L 5493751 3` UTR CR44520 - chr3L 5493822 3` UTR CR44520 - chr3L 5493892 3` UTR CR44520 - chr3L_7_5490001 chr3L_5490001 RAL-361 1673 chr3L 5493763 5493826 chr3L 5493877 5493907 23 128 5.5 10.0 7.8 2.6 144 chr3L 5493763 3` UTR CR44520 - chr3L 5493835 3` UTR CR44520 - chr3L 5493907 3` UTR CR44520 - chr3L_23_5490001 chr3L_5490001 RAL-361 1674 chr3L 5498348 5498424 chr3L 5498479 5498551 13 123 1.5 8.5 5.0 2.2 203 chr3L 5498348 exon blanks - chr3L 5498450 exon blanks - chr3L 5498551 exon blanks - chr3L_13_5495001 chr3L_5495001 RAL-361 1675 chr3L 5500662 5500700 chr3L 5500853 5500891 19 190 6.0 11.5 8.8 1.9 229 chr3L 5500662 intergenic CR44519 - chr3L 5500776 intergenic CR44519 - chr3L 5500891 intergenic CR44519 - chr3L_19_5500001 chr3L_5500001 RAL-361 1676 chr3L 5537676 5537693 chr3L 5538068 5538085 jockey 7 392 16.0 4.0 10.0 0.6 409 chr3L 5537676 intergenic not near genes chr3L 5537880 intergenic not near genes chr3L 5538085 intergenic CG10625 - chr3L_7_5535001 chr3L_5535001 RAL-361 1677 chr3L 5537697 5537744 chr3L 5538063 5538136 jockey 19 387 7.0 3.0 5.0 3.2 439 chr3L 5537697 intergenic not near genes chr3L 5537916 intergenic CG10625 - chr3L 5538136 intergenic CG10625 - chr3L_19_5535001 chr3L_5535001 RAL-361 1678 chr3L 5613449 5613517 chr3L 5613626 5613694 11 177 0.0 5.5 2.8 2.9 245 chr3L 5613449 intergenic not near genes chr3L 5613572 intergenic not near genes chr3L 5613694 intergenic not near genes chr3L_11_5610001 chr3L_5610001 RAL-361 1679 chr3L 5666265 5666284 chr3L 5666399 5666418 9 134 0.0 12.0 6.0 1.3 153 chr3L 5666265 intron sif + chr3L 5666342 intron sif + chr3L 5666418 intron sif + chr3L_9_5665001 chr3L_5665001 RAL-361 1680 chr3L 5674078 5674095 chr3L 5674284 5674301 7 206 6.5 10.0 8.2 0.8 223 chr3L 5674078 intron sif + chr3L 5674190 intron sif + chr3L 5674301 intron sif + chr3L_7_5670001 chr3L_5670001 RAL-361 1681 chr3L 5715567 5715634 chr3L 5715727 5715793 16 157 7.0 7.0 7.0 2.0 226 chr3L 5715567 intron sif + chr3L 5715680 intron sif + chr3L 5715793 intron sif + chr3L_16_5715001 chr3L_5715001 RAL-361 1682 chr3L 5886372 5886429 chr3L 5886492 5886545 20 127 8.0 10.0 9.0 2.0 173 chr3L 5886372 intergenic not near genes chr3L 5886458 intergenic not near genes chr3L 5886545 intergenic not near genes chr3L_20_5885001 chr3L_5885001 RAL-361 1683 chr3L 5909991 5910056 chr3L 5910282 5910347 pogo 38 291 11.5 10.0 10.8 3.2 356 chr3L 5909991 intron CG13288 + chr3L 5910169 intron CG13288 + chr3L 5910347 intron CG13288 + chr3L_38_5910001 chr3L_5910001 RAL-361 1684 chr3L 5926270 5926345 chr3L 5926510 5926587 BS 25 239 5.5 13.0 9.2 2.5 317 chr3L 5926270 intron Vap-33B + chr3L 5926428 intron Vap-33B + chr3L 5926587 intron Vap-33B + chr3L_25_5925001 chr3L_5925001 RAL-361 1685 chr3L 5983796 5983854 chr3L 5983959 5984018 18 169 10.0 0.0 5.0 3.0 222 chr3L 5983796 3` UTR CR45439 - chr3L 5983907 intergenic CR45439 -,CR45440 - chr3L 5984018 intergenic CR45440 -,CR45439 - chr3L_18_5980001 chr3L_5980001 RAL-361 1686 chr3L 6001638 6001713 chr3L 6004388 6004463 jockey 19 2750 7.5 0.5 4.0 3.8 2825 chr3L 6001638 intron PVRAP + chr3L 6003050 intron PVRAP + chr3L 6004463 intron PVRAP + chr3L_19_6000001 chr3L_6000001 RAL-361 1687 chr3L 6040315 6040360 chr3L 6042721 6042766 Doc 20 2405 15.5 0.0 7.8 2.3 2451 chr3L 6040315 intergenic Jon65Aiv + chr3L 6041540 intergenic not near genes chr3L 6042766 intergenic not near genes chr3L_20_6040001 chr3L_6040001 RAL-361 1688 chr3L 6052086 6052152 chr3L 6052222 6052288 9 136 3.5 6.0 4.8 1.6 202 chr3L 6052086 intergenic Jon65Aii +,Jon65Aiii + chr3L 6052187 intergenic Jon65Aii +,Jon65Aiii + chr3L 6052288 intergenic Jon65Aii + chr3L_9_6050001 chr3L_6050001 RAL-361 1689 chr3L 6064965 6065041 chr3L 6065092 6065168 28 127 6.0 4.5 5.2 4.5 203 chr3L 6064965 intergenic not near genes chr3L 6065066 intergenic not near genes chr3L 6065168 intergenic not near genes chr3L_28_6065001 chr3L_6065001 RAL-361 1690 chr3L 6071707 6071744 chr3L 6071840 6071890 6 135 3.5 0.0 1.8 2.1 183 chr3L 6071707 intergenic CG42269 +,CG6602 + chr3L 6071798 intergenic CG42269 +,CG6602 + chr3L 6071890 intergenic CG6602 +,CG42269 + chr3L_6_6070001 chr3L_6070001 RAL-361 1691 chr3L 6119103 6119128 chr3L 6119230 6119255 14 127 7.5 0.0 3.8 2.9 152 chr3L 6119103 exon Ets65A + chr3L 6119179 intron Ets65A + chr3L 6119255 intron Ets65A + chr3L_14_6115001 chr3L_6115001 RAL-361 1692 chr3L 6124351 6124360 chr3L 6124508 6124514 5 156 4.5 18.5 11.5 0.4 163 chr3L 6124351 exon l(3)mbn - chr3L 6124432 exon l(3)mbn - chr3L 6124514 exon l(3)mbn - chr3L_5_6120001 chr3L_6120001 RAL-361 1693 chr3L 6155647 6155705 chr3L 6155783 6155841 22 135 6.0 6.0 6.0 3.1 194 chr3L 6155647 intergenic CR45421 - chr3L 6155744 intergenic not near genes chr3L 6155841 intergenic not near genes chr3L_22_6155001 chr3L_6155001 RAL-361 1694 chr3L 6220872 6220937 chr3L 6230068 6230139 roo 20 9202 7.0 9.0 8.0 2.2 9267 chr3L 6220872 5` UTR pncr008:3L + chr3L 6225506 intergenic not near genes chr3L 6230139 intergenic not near genes chr3L_20_6225001 chr3L_6225001 RAL-361 1695 chr3L 6278000 6278223 chr3L 6278127 6278348 35 126 8.0 8.0 8.0 3.9 348 chr3L 6278000 intergenic not near genes chr3L 6278174 intergenic not near genes chr3L 6278348 intergenic not near genes chr3L_35_6275001 chr3L_6275001 RAL-361 1696 chr3L 6334966 6335030 chr3L 6335486 6335551 297 28 519 10.5 8.5 9.5 2.7 585 chr3L 6334966 intron CG13300 - chr3L 6335258 intron CG13300 - chr3L 6335551 intron CG13300 - chr3L_28_6335001 chr3L_6335001 RAL-361 1697 chr3L 6405618 6405678 chr3L 6432132 6432192 roo 14 26514 8.0 10.5 9.2 1.4 26574 chr3L 6405618 intron CG42747 + chr3L 6418905 intron CG42747 + chr3L 6432192 intron CG42747 + chr3L_14_6415001 chr3L_6415001 RAL-361 1698 chr3L 6456306 6456319 chr3L 6456440 6456453 7 134 8.5 21.0 14.8 0.4 147 chr3L 6456306 intron CG42747 + chr3L 6456380 intron CG42747 + chr3L 6456453 intron CG42747 + chr3L_7_6455001 chr3L_6455001 RAL-361 1699 chr3L 6498667 6498674 chr3L 6498802 6498809 4 135 7.0 12.0 9.5 0.4 142 chr3L 6498667 intron sfl + chr3L 6498738 intron sfl + chr3L 6498809 intron sfl + chr3L_4_6495001 chr3L_6495001 RAL-361 1700 chr3L 6512233 6512279 chr3L 6512358 6512414 15 132 16.5 4.5 10.5 1.3 181 chr3L 6512233 intron sfl + chr3L 6512324 intron sfl + chr3L 6512414 intron sfl + chr3L_15_6510001 chr3L_6510001 RAL-361 1701 chr3L 6604288 6604293 chr3L 6604415 6604420 7 127 3.0 29.5 16.2 0.4 132 chr3L 6604288 intron CG8368 + chr3L 6604354 intron CG8368 + chr3L 6604420 intron,3` UTR CG8368 +,zpg - chr3L_7_6600001 chr3L_6600001 RAL-361 1702 chr3L 6620565 6620600 chr3L 6621055 6621090 Rt1c 16 489 8.5 15.0 11.8 1.2 525 chr3L 6620565 intergenic not near genes chr3L 6620828 intergenic not near genes chr3L 6621090 intergenic not near genes chr3L_16_6620001 chr3L_6620001 RAL-361 1703 chr3L 6632381 6632418 chr3L 6632518 6632555 14 137 12.0 13.5 12.8 1.0 174 chr3L 6632381 intron GluRIA + chr3L 6632468 intron GluRIA + chr3L 6632555 intron GluRIA + chr3L_14_6630001 chr3L_6630001 RAL-361 1704 chr3L 6632421 6632442 chr3L 6632508 6632579 9 131 8.0 11.0 9.5 0.9 158 chr3L 6632421 intron GluRIA + chr3L 6632500 intron GluRIA + chr3L 6632579 intron GluRIA + chr3L_9_6630001 chr3L_6630001 RAL-361 1705 chr3L 6643119 6643185 chr3L 6643259 6643325 22 137 4.5 6.0 5.2 3.5 206 chr3L 6643119 intergenic CR45239 + chr3L 6643222 intergenic CR45239 + chr3L 6643325 intergenic CR45239 + chr3L_22_6640001 chr3L_6640001 RAL-361 1706 chr3L 6698027 6698093 chr3L 6698158 6698224 20 129 6.5 10.5 8.5 2.1 197 chr3L 6698027 intron SP1173 - chr3L 6698126 intron SP1173 - chr3L 6698224 intron SP1173 - chr3L_20_6695001 chr3L_6695001 RAL-361 1707 chr3L 6778493 6778534 chr3L 6778632 6778677 7 141 0.0 7.5 3.8 1.5 184 chr3L 6778493 intergenic not near genes chr3L 6778585 intergenic not near genes chr3L 6778677 intergenic not near genes chr3L_7_6775001 chr3L_6775001 RAL-361 1708 chr3L 6781080 6781141 chr3L 6783143 6783204 Doc 33 2063 12.0 9.0 10.5 2.9 2124 chr3L 6781080 intergenic not near genes chr3L 6782142 intergenic not near genes chr3L 6783204 intergenic not near genes chr3L_33_6780001 chr3L_6780001 RAL-361 1709 chr3L 6842576 6842616 chr3L 6842709 6842754 16 138 6.5 3.0 4.8 2.8 178 chr3L 6842576 intergenic not near genes chr3L 6842665 intergenic not near genes chr3L 6842754 intergenic not near genes chr3L_16_6840001 chr3L_6840001 RAL-361 1710 chr3L 6855882 6855945 chr3L 6860716 6860779 Doc 22 4832 0.5 8.5 4.5 4.0 4897 chr3L 6855882 intergenic not near genes chr3L 6858330 intergenic not near genes chr3L 6860779 intergenic not near genes chr3L_22_6855001 chr3L_6855001 RAL-361 1711 chr3L 6875198 6875217 chr3L 6875320 6875344 14 126 10.5 4.0 7.2 1.7 146 chr3L 6875198 intergenic not near genes chr3L 6875271 intergenic not near genes chr3L 6875344 intergenic not near genes chr3L_14_6875001 chr3L_6875001 RAL-361 1712 chr3L 6887465 6887524 chr3L 6895007 6895066 roo 30 7541 7.5 10.5 9.0 3.0 7601 chr3L 6887465 intergenic not near genes chr3L 6891266 intergenic not near genes chr3L 6895066 intergenic not near genes chr3L_30_6890001 chr3L_6890001 RAL-361 1713 chr3L 6900828 6900893 chr3L 6900954 6901019 19 126 0.0 8.5 4.2 3.7 191 chr3L 6900828 intergenic not near genes chr3L 6900924 intergenic not near genes chr3L 6901019 intergenic not near genes chr3L_19_6900001 chr3L_6900001 RAL-361 1714 chr3L 6907969 6908046 chr3L 6908104 6908173 18 130 6.5 1.0 3.8 3.8 204 chr3L 6907969 intergenic not near genes chr3L 6908071 intergenic not near genes chr3L 6908173 intergenic not near genes chr3L_18_6905001 chr3L_6905001 RAL-361 1715 chr3L 6974446 6974516 chr3L 6974589 6974667 16 149 7.0 5.5 6.2 2.2 221 chr3L 6974446 exon Galphai - chr3L 6974556 intron Galphai - chr3L 6974667 intron Galphai - chr3L_16_6970001 chr3L_6970001 RAL-361 1716 chr3L 6981900 6981937 chr3L 6982104 6982141 15 203 1.5 6.5 4.0 3.0 241 chr3L 6981900 intergenic not near genes chr3L 6982020 intergenic not near genes chr3L 6982141 intergenic not near genes chr3L_15_6980001 chr3L_6980001 RAL-361 1717 chr3L 6994850 6994903 chr3L 6995501 6995564 BS 17 660 0.5 9.5 5.0 2.8 714 chr3L 6994850 intergenic bin + chr3L 6995207 intergenic not near genes chr3L 6995564 intergenic not near genes chr3L_17_6995001 chr3L_6995001 RAL-361 1718 chr3L 7001938 7001975 chr3L 7002109 7002146 18 171 11.0 8.5 9.8 1.7 208 chr3L 7001938 intron Mp + chr3L 7002042 intron Mp + chr3L 7002146 intron Mp + chr3L_18_7000001 chr3L_7000001 RAL-361 1719 chr3L 7033024 7033086 chr3L 7033157 7033204 19 137 4.5 7.0 5.8 2.8 180 chr3L 7033024 intron Mp + chr3L 7033114 intron Mp + chr3L 7033204 intron Mp + chr3L_19_7030001 chr3L_7030001 RAL-361 1720 chr3L 7041875 7041921 chr3L 7042003 7042049 14 128 7.0 7.0 7.0 1.8 174 chr3L 7041875 intron Mp + chr3L 7041962 intron Mp + chr3L 7042049 intron Mp + chr3L_14_7040001 chr3L_7040001 RAL-361 1721 chr3L 7079564 7079588 chr3L 7079691 7079715 14 126 23.0 10.0 16.5 0.8 151 chr3L 7079564 intergenic not near genes chr3L 7079640 intergenic not near genes chr3L 7079715 intergenic not near genes chr3L_14_7075001 chr3L_7075001 RAL-361 1722 chr3L 7079594 7079633 chr3L 7079688 7079759 10 123 10.5 8.5 9.5 1.0 165 chr3L 7079594 intergenic not near genes chr3L 7079676 intergenic not near genes chr3L 7079759 intergenic not near genes chr3L_10_7075001 chr3L_7075001 RAL-361 1723 chr3L 7104899 7104965 chr3L 7105048 7105103 7 140 9.5 0.0 4.8 1.2 204 chr3L 7104899 intron form3 + chr3L 7105001 intron form3 + chr3L 7105103 intron form3 + chr3L_7_7105001 chr3L_7105001 RAL-361 1724 chr3L 7112544 7112604 chr3L 7112681 7112741 25 137 13.0 11.0 12.0 1.9 197 chr3L 7112544 intron form3 + chr3L 7112642 intron form3 + chr3L 7112741 intron form3 + chr3L_25_7110001 chr3L_7110001 RAL-361 1725 chr3L 7150866 7150897 chr3L 7150992 7151023 18 126 7.5 11.0 9.2 1.8 157 chr3L 7150866 intron corn - chr3L 7150944 intron corn - chr3L 7151023 intron corn - chr3L_18_7150001 chr3L_7150001 RAL-361 1726 chr3L 7201339 7201383 chr3L 7201478 7201502 9 135 15.5 11.0 13.2 0.6 163 chr3L 7201339 intergenic not near genes chr3L 7201420 intergenic not near genes chr3L 7201502 intergenic not near genes chr3L_9_7200001 chr3L_7200001 RAL-361 1727 chr3L 7258879 7258932 chr3L 7259069 7259122 14 190 4.0 4.5 4.2 2.7 243 chr3L 7258879 intron CG14830 - chr3L 7259000 intron CG14830 - chr3L 7259122 intron CG14830 - chr3L_14_7255001 chr3L_7255001 RAL-361 1728 chr3L 7276103 7276106 chr3L 7276237 7276241 4 135 19.5 12.5 16.0 0.2 138 chr3L 7276103 intron unc-13-4A - chr3L 7276172 intron unc-13-4A - chr3L 7276241 intron unc-13-4A - chr3L_4_7275001 chr3L_7275001 RAL-361 1729 chr3L 7276109 7276171 chr3L 7276234 7276303 7 131 4.5 12.0 8.2 0.8 194 chr3L 7276109 intron unc-13-4A - chr3L 7276206 intron unc-13-4A - chr3L 7276303 intron unc-13-4A - chr3L_7_7275001 chr3L_7275001 RAL-361 1730 chr3L 7277064 7277135 chr3L 7277216 7277287 26 151 7.5 8.0 7.8 3.0 223 chr3L 7277064 exon unc-13-4A - chr3L 7277176 intron unc-13-4A - chr3L 7277287 intron unc-13-4A - chr3L_26_7275001 chr3L_7275001 RAL-361 1731 chr3L 7285402 7285459 chr3L 7285530 7285587 20 127 4.0 3.5 3.8 4.2 185 chr3L 7285402 intron unc-13-4A - chr3L 7285494 intron unc-13-4A - chr3L 7285587 intron unc-13-4A - chr3L_20_7285001 chr3L_7285001 RAL-361 1732 chr3L 7377280 7377309 chr3L 7380433 7380464 297 9 3155 17.0 11.5 14.2 0.6 3184 chr3L 7377280 intron SMSr - chr3L 7378872 intron SMSr - chr3L 7380464 intron SMSr - chr3L_9_7375001 chr3L_7375001 RAL-361 1733 chr3L 7377310 7377339 chr3L 7380465 7380494 297 14 3155 10.5 19.5 15.0 0.9 3184 chr3L 7377310 intron SMSr - chr3L 7378902 intron SMSr - chr3L 7380494 intron SMSr - chr3L_14_7375001 chr3L_7375001 RAL-361 1734 chr3L 7388208 7388259 chr3L 7388352 7388441 6 172 12.0 0.0 6.0 0.9 233 chr3L 7388208 intergenic CG8564 - chr3L 7388324 intergenic CG8564 - chr3L 7388441 intergenic not near genes chr3L_6_7385001 chr3L_7385001 RAL-361 1735 chr3L 7411644 7411654 chr3L 7411766 7411791 5 134 18.5 9.5 14.0 0.3 147 chr3L 7411644 intergenic not near genes chr3L 7411718 intergenic not near genes chr3L 7411791 intergenic not near genes chr3L_5_7410001 chr3L_7410001 RAL-361 1736 chr3L 7411655 7411702 chr3L 7411762 7411839 21 135 8.0 9.5 8.8 2.1 184 chr3L 7411655 intergenic not near genes chr3L 7411747 intergenic not near genes chr3L 7411839 intergenic not near genes chr3L_21_7410001 chr3L_7410001 RAL-361 1737 chr3L 7436084 7436150 chr3L 7436212 7436253 22 120 5.0 7.5 6.2 3.1 169 chr3L 7436084 intron CG42458 + chr3L 7436168 intron CG42458 + chr3L 7436253 intron CG42458 + chr3L_22_7435001 chr3L_7435001 RAL-361 1738 chr3L 7498728 7498772 chr3L 7503555 7503594 F-element 14 4825 14.0 12.5 13.2 1.0 4866 chr3L 7498728 5` UTR CG8539 - chr3L 7501161 intergenic not near genes chr3L 7503594 intergenic not near genes chr3L_14_7500001 chr3L_7500001 RAL-361 1739 chr3L 7505385 7505432 chr3L 7505511 7505558 17 126 4.0 11.5 7.8 1.9 173 chr3L 7505385 intergenic CG7548 - chr3L 7505472 intergenic CG7548 - chr3L 7505558 3` UTR CG7548 - chr3L_17_7505001 chr3L_7505001 RAL-361 1740 chr3L 7527482 7527526 chr3L 7527616 7527660 25 133 9.5 6.5 8.0 2.8 178 chr3L 7527482 3` UTR ltl + chr3L 7527571 3` UTR ltl + chr3L 7527660 3` UTR ltl + chr3L_25_7525001 chr3L_7525001 RAL-361 1741 chr3L 7574789 7574857 chr3L 7574929 7574984 12 136 0.0 5.5 2.8 3.2 195 chr3L 7574789 intergenic not near genes chr3L 7574886 intergenic not near genes chr3L 7574984 intergenic not near genes chr3L_12_7570001 chr3L_7570001 RAL-361 1742 chr3L 7587897 7587967 chr3L 7588027 7588097 25 130 8.5 7.5 8.0 2.8 200 chr3L 7587897 intergenic not near genes chr3L 7587997 intergenic not near genes chr3L 7588097 intergenic not near genes chr3L_25_7585001 chr3L_7585001 RAL-361 1743 chr3L 7591102 7591112 chr3L 7591243 7591253 4 141 22.0 6.5 14.2 0.3 151 chr3L 7591102 intergenic CG7716 - chr3L 7591178 intergenic CG7716 - chr3L 7591253 intergenic CG7716 - chr3L_4_7590001 chr3L_7590001 RAL-361 1744 chr3L 7591118 7591158 chr3L 7591242 7591299 20 138 10.0 6.0 8.0 2.2 181 chr3L 7591118 intergenic CG7716 - chr3L 7591208 intergenic CG7716 - chr3L 7591299 intergenic CG7716 - chr3L_20_7590001 chr3L_7590001 RAL-361 1745 chr3L 7591168 7591177 chr3L 7591239 7591297 6 112 6.0 5.0 5.5 0.9 129 chr3L 7591168 intergenic CG7716 - chr3L 7591232 intergenic CG7716 - chr3L 7591297 intergenic CG7716 - chr3L_6_7590001 chr3L_7590001 RAL-361 1746 chr3L 7650493 7650538 chr3L 7650702 7650747 15 208 12.5 0.0 6.2 2.1 254 chr3L 7650493 intergenic CG32373 + chr3L 7650620 5` UTR CG32373 + chr3L 7650747 5` UTR CG32373 + chr3L_15_7650001 chr3L_7650001 RAL-361 1747 chr3L 7711944 7711975 chr3L 7712086 7712116 7 142 16.0 0.0 8.0 0.8 172 chr3L 7711944 intron,intron CG32373 +,Ank2 - chr3L 7712030 intron,intron CG32373 +,Ank2 - chr3L 7712116 intron,intron CG32373 +,Ank2 - chr3L_7_7710001 chr3L_7710001 RAL-361 1748 chr3L 7743662 7743740 chr3L 7743817 7743879 20 154 0.0 4.0 2.0 6.7 217 chr3L 7743662 intron CG32373 + chr3L 7743770 intron CG32373 + chr3L 7743879 intron CG32373 + chr3L_20_7740001 chr3L_7740001 RAL-361 1749 chr3L 7793670 7793732 chr3L 7800772 7800834 297 24 7102 12.0 11.0 11.5 1.9 7164 chr3L 7793670 intron CG32369 - chr3L 7797252 intron CG32369 - chr3L 7800834 intron CG32369 - chr3L_24_7795001 chr3L_7795001 RAL-361 1750 chr3L 7806816 7807105 chr3L 7806952 7807237 58 135 11.0 8.5 9.8 5.4 421 chr3L 7806816 intron CG32369 - chr3L 7807026 intron CG32369 - chr3L 7807237 intron CG32369 - chr3L_58_7805001 chr3L_7805001 RAL-361 1751 chr3L 7866168 7866234 chr3L 7866805 7866871 35 635 5.0 8.5 6.8 4.5 703 chr3L 7866168 intron Pdp1 - chr3L 7866520 intron Pdp1 - chr3L 7866871 intron Pdp1 - chr3L_35_7865001 chr3L_7865001 RAL-361 1752 chr3L 7868560 7868582 chr3L 7868689 7868711 10 129 0.0 9.0 4.5 1.8 151 chr3L 7868560 intergenic CG32365 + chr3L 7868636 intergenic CG32365 + chr3L 7868711 intergenic CG32365 + chr3L_10_7865001 chr3L_7865001 RAL-361 1753 chr3L 7886482 7886537 chr3L 7889041 7889105 Stalker4 21 2563 4.5 9.5 7.0 2.6 2623 chr3L 7886482 intron CG32365 + chr3L 7887794 intron CG32365 + chr3L 7889105 intron CG32365 + chr3L_21_7885001 chr3L_7885001 RAL-361 1754 chr3L 7916786 7916856 chr3L 7926007 7926041 roo 27 9220 8.0 8.5 8.2 2.9 9255 chr3L 7916786 3` UTR syd - chr3L 7921414 intron syd - chr3L 7926041 3` UTR syd - chr3L_27_7920001 chr3L_7920001 RAL-361 1755 chr3L 7985323 7985387 chr3L 7987701 7987765 NOF 29 2377 10.0 12.5 11.2 2.4 2442 chr3L 7985323 intron nmo + chr3L 7986544 intron nmo + chr3L 7987765 intron nmo + chr3L_29_7985001 chr3L_7985001 RAL-361 1756 chr3L 7998831 7998902 chr3L 7998962 7999005 14 129 0.0 6.0 3.0 3.5 174 chr3L 7998831 intron nmo + chr3L 7998918 intron nmo + chr3L 7999005 intron nmo + chr3L_14_7995001 chr3L_7995001 RAL-361 1757 chr3L 8041518 8041571 chr3L 8041646 8041699 23 127 10.5 8.5 9.5 2.2 181 chr3L 8041518 intron nmo + chr3L 8041608 intron nmo + chr3L 8041699 intron nmo + chr3L_23_8040001 chr3L_8040001 RAL-361 1758 chr3L 8059992 8060006 chr3L 8060142 8060156 7 150 17.5 7.5 12.5 0.5 164 chr3L 8059992 intergenic not near genes chr3L 8060074 intergenic not near genes chr3L 8060156 intergenic not near genes chr3L_7_8060001 chr3L_8060001 RAL-361 1759 chr3L 8060009 8060038 chr3L 8060139 8060187 6 146 11.0 7.0 9.0 0.6 178 chr3L 8060009 intergenic not near genes chr3L 8060098 intergenic not near genes chr3L 8060187 intergenic not near genes chr3L_6_8060001 chr3L_8060001 RAL-361 1760 chr3L 8060040 8060052 chr3L 8060135 8060201 7 141 8.5 6.5 7.5 0.8 161 chr3L 8060040 intergenic not near genes chr3L 8060120 intergenic not near genes chr3L 8060201 intergenic not near genes chr3L_7_8060001 chr3L_8060001 RAL-361 1761 chr3L 8062818 8062852 chr3L 8062945 8062973 8 124 7.0 13.5 10.2 0.7 155 chr3L 8062818 intergenic not near genes chr3L 8062896 intergenic not near genes chr3L 8062973 intergenic not near genes chr3L_8_8060001 chr3L_8060001 RAL-361 1762 chr3L 8149711 8149774 chr3L 8149867 8149930 37 156 9.0 9.5 9.2 3.6 219 chr3L 8149711 intron CG13676 - chr3L 8149820 intron CG13676 - chr3L 8149930 intron CG13676 - chr3L_37_8145001 chr3L_8145001 RAL-361 1763 chr3L 8178472 8178477 chr3L 8178599 8178604 5 127 16.0 0.0 8.0 0.6 132 chr3L 8178472 intergenic Nmt -,mthl7 - chr3L 8178538 intergenic Nmt -,mthl7 - chr3L 8178604 intergenic mthl7 -,Nmt - chr3L_5_8175001 chr3L_8175001 RAL-361 1764 chr3L 8203489 8203565 chr3L 8203616 8203632 21 113 5.0 3.5 4.2 4.0 143 chr3L 8203489 intergenic CG13679 + chr3L 8203560 intergenic CG13679 + chr3L 8203632 intergenic CG13679 + chr3L_21_8200001 chr3L_8200001 RAL-361 1765 chr3L 8206364 8206381 chr3L 8207223 8207240 9 856 18.5 9.5 14.0 0.6 876 chr3L 8206364 intergenic not near genes chr3L 8206802 intergenic not near genes chr3L 8207240 intergenic not near genes chr3L_9_8205001 chr3L_8205001 RAL-361 1766 chr3L 8206383 8206434 chr3L 8207221 8207293 23 850 9.5 9.0 9.2 2.3 910 chr3L 8206383 intergenic not near genes chr3L 8206838 intergenic not near genes chr3L 8207293 intergenic not near genes chr3L_23_8205001 chr3L_8205001 RAL-361 1767 chr3L 8226668 8226748 chr3L 8226817 8226890 15 146 2.5 0.0 1.2 6.8 222 chr3L 8226668 intergenic not near genes chr3L 8226779 intergenic not near genes chr3L 8226890 intergenic not near genes chr3L_15_8225001 chr3L_8225001 RAL-361 1768 chr3L 8231384 8231409 chr3L 8231510 8231512 4 120 7.5 14.5 11.0 0.3 128 chr3L 8231384 5` UTR CR43953 + chr3L 8231448 5` UTR CR43953 + chr3L 8231512 5` UTR CR43953 + chr3L_4_8230001 chr3L_8230001 RAL-361 1769 chr3L 8233542 8233590 chr3L 8238854 8238881 Rt1a 24 5306 10.5 16.0 13.2 1.7 5339 chr3L 8233542 intron CG7213 - chr3L 8236212 intron CG7213 - chr3L 8238881 intron,intron CG7213 -,Dscam4 + chr3L_24_8235001 chr3L_8235001 RAL-361 1770 chr3L 8274788 8274820 chr3L 8274952 8274959 6 160 14.5 0.0 7.2 0.7 171 chr3L 8274788 intron Dscam4 + chr3L 8274874 intron Dscam4 + chr3L 8274959 intron Dscam4 + chr3L_6_8270001 chr3L_8270001 RAL-361 1771 chr3L 8302239 8302314 chr3L 8304731 8304804 32 2493 62.5 66.5 64.5 0.5 2565 chr3L 8302239 3` UTR CG13671 + chr3L 8303522 intron CG7194 - chr3L 8304804 exon Sbp2 + chr3L_32_8300001 chr3L_8300001 RAL-361 1772 chr3L 8363682 8363747 chr3L 8363812 8363879 19 132 10.5 0.5 5.5 2.9 197 chr3L 8363682 intergenic not near genes chr3L 8363780 intergenic not near genes chr3L 8363879 intergenic not near genes chr3L_19_8360001 chr3L_8360001 RAL-361 1773 chr3L 8364481 8364526 chr3L 8364622 8364667 19 141 14.0 8.0 11.0 1.6 186 chr3L 8364481 intergenic not near genes chr3L 8364574 intergenic not near genes chr3L 8364667 intergenic not near genes chr3L_19_8360001 chr3L_8360001 RAL-361 1774 chr3L 8456427 8456483 chr3L 8456568 8456618 32 136 12.5 13.5 13.0 2.3 191 chr3L 8456427 intron Gug + chr3L 8456522 intron Gug + chr3L 8456618 intron Gug + chr3L_32_8455001 chr3L_8455001 RAL-361 1775 chr3L 8481750 8481802 chr3L 8490937 8490988 roo 22 9188 7.0 8.5 7.8 2.5 9238 chr3L 8481750 intron CG43163 - chr3L 8486369 intron CG43163 - chr3L 8490988 intron CG43163 - chr3L_22_8485001 chr3L_8485001 RAL-361 1776 chr3L 8498260 8498322 chr3L 8505777 8505839 blood 34 7517 10.5 12.5 11.5 2.7 7579 chr3L 8498260 intron CG43163 - chr3L 8502050 intron CG43163 - chr3L 8505839 intron CG43163 - chr3L_34_8500001 chr3L_8500001 RAL-361 1777 chr3L 8576226 8576271 chr3L 8576370 8576396 13 143 0.5 8.0 4.2 2.5 170 chr3L 8576226 intergenic CG6638 - chr3L 8576311 intergenic CG6638 -,CG43078 + chr3L 8576396 intergenic CG6638 -,CG43078 + chr3L_13_8575001 chr3L_8575001 RAL-361 1778 chr3L 8589529 8589582 chr3L 8589666 8589721 9 138 7.0 4.0 5.5 1.4 192 chr3L 8589529 intron CG43078 + chr3L 8589625 intron CG43078 + chr3L 8589721 intron CG43078 + chr3L_9_8585001 chr3L_8585001 RAL-361 1779 chr3L 8642888 8642891 chr3L 10303745 10303753 4 1660861 45.5 11.5 28.5 0.1 1660865 chr3L 8642888 intron Cpr66D + chr3L 9473320 exon CG44838 + chr3L 10303753 intergenic not near genes chr3L_4_9470001 chr3L_9470001 RAL-361 1780 chr3L 8643532 8643598 chr3L 8643658 8643724 48 126 9.0 11.5 10.2 4.3 192 chr3L 8643532 3` UTR Cpr66D + chr3L 8643628 intergenic Cpr66D + chr3L 8643724 intergenic Cpr66D + chr3L_48_8640001 chr3L_8640001 RAL-361 1781 chr3L 8678651 8678671 chr3L 8678788 8678808 11 136 32.5 14.0 23.2 0.5 157 chr3L 8678651 3` UTR h + chr3L 8678730 3` UTR h + chr3L 8678808 3` UTR h + chr3L_11_8675001 chr3L_8675001 RAL-361 1782 chr3L 8700939 8700954 chr3L 8701070 8701087 9 133 28.5 8.5 18.5 0.5 148 chr3L 8700939 intergenic not near genes chr3L 8701013 intergenic not near genes chr3L 8701087 intergenic not near genes chr3L_9_8700001 chr3L_8700001 RAL-361 1783 chr3L 8700955 8701011 chr3L 8701068 8701128 38 129 12.0 8.0 10.0 3.5 173 chr3L 8700955 intergenic not near genes chr3L 8701042 intergenic not near genes chr3L 8701128 intergenic not near genes chr3L_38_8700001 chr3L_8700001 RAL-361 1784 chr3L 8755328 8755405 chr3L 8755662 8755721 41 331 11.0 13.5 12.2 3.1 393 chr3L 8755328 intron Fhos + chr3L 8755524 intron Fhos + chr3L 8755721 intron Fhos + chr3L_41_8755001 chr3L_8755001 RAL-361 1785 chr3L 8765563 8765640 chr3L 8765712 8765787 38 149 9.5 8.5 9.0 3.8 224 chr3L 8765563 intron Fhos + chr3L 8765675 intron Fhos + chr3L 8765787 intron Fhos + chr3L_38_8765001 chr3L_8765001 RAL-361 1786 chr3L 8784812 8784860 chr3L 8784945 8784993 23 132 9.5 3.5 6.5 3.1 181 chr3L 8784812 intron Fhos + chr3L 8784902 intron Fhos + chr3L 8784993 intron Fhos + chr3L_23_8780001 chr3L_8780001 RAL-361 1787 chr3L 8791236 8791296 chr3L 8796701 8796760 I-element 15 5464 9.0 0.0 4.5 2.7 5524 chr3L 8791236 exon Fhos + chr3L 8793998 intron Fhos + chr3L 8796760 intron Fhos + chr3L_15_8790001 chr3L_8790001 RAL-361 1788 chr3L 8791297 8791309 chr3L 8796761 8796773 I-element 6 5464 6.0 14.0 10.0 0.5 5476 chr3L 8791297 exon Fhos + chr3L 8794035 intron Fhos + chr3L 8796773 intron Fhos + chr3L_6_8790001 chr3L_8790001 RAL-361 1789 chr3L 8824523 8824598 chr3L 8824661 8824710 25 134 8.5 5.0 6.8 3.2 187 chr3L 8824523 intergenic not near genes chr3L 8824616 intergenic not near genes chr3L 8824710 intergenic not near genes chr3L_25_8820001 chr3L_8820001 RAL-361 1790 chr3L 8831751 8831809 chr3L 8831882 8831940 33 131 0.0 12.0 6.0 4.7 189 chr3L 8831751 intron dally + chr3L 8831846 intron dally + chr3L 8831940 intron dally + chr3L_33_8830001 chr3L_8830001 RAL-361 1791 chr3L 8839676 8839746 chr3L 8839806 8839876 22 130 7.5 6.0 6.8 2.8 200 chr3L 8839676 intron dally + chr3L 8839776 intron dally + chr3L 8839876 intron dally + chr3L_22_8835001 chr3L_8835001 RAL-361 1792 chr3L 8846156 8846206 chr3L 8846286 8846337 17 131 4.0 0.0 2.0 5.7 181 chr3L 8846156 intron dally + chr3L 8846246 intron dally + chr3L 8846337 intron dally + chr3L_17_8845001 chr3L_8845001 RAL-361 1793 chr3L 8864074 8864099 chr3L 8864225 8864235 10 146 17.5 12.0 14.8 0.6 161 chr3L 8864074 intron dally + chr3L 8864154 intron dally + chr3L 8864235 intron dally + chr3L_10_8860001 chr3L_8860001 RAL-361 1794 chr3L 8949350 8949509 chr3L 8949497 8949630 18 160 2.5 0.0 1.2 8.2 280 chr3L 8949350 intron,intron CG43783 -,orb2 - chr3L 8949490 intron,intron CG43783 -,orb2 - chr3L 8949630 intron,intron CG43783 -,orb2 - chr3L_18_8945001 chr3L_8945001 RAL-361 1795 chr3L 8959347 8959364 chr3L 8959558 8959574 14 210 20.5 2.0 11.2 1.1 227 chr3L 8959347 intron CG13313 + chr3L 8959460 intron CG13313 + chr3L 8959574 intron CG13313 + chr3L_14_8955001 chr3L_8955001 RAL-361 1796 chr3L 9003908 9003970 chr3L 9004043 9004105 29 133 9.5 11.0 10.2 2.6 197 chr3L 9003908 intergenic not near genes chr3L 9004006 intergenic not near genes chr3L 9004105 intergenic not near genes chr3L_29_9000001 chr3L_9000001 RAL-361 1797 chr3L 9009915 9009973 chr3L 9010069 9010127 22 154 2.5 10.0 6.2 3.1 212 chr3L 9009915 intergenic CG5194 - chr3L 9010021 intergenic CG5194 - chr3L 9010127 intergenic CG5194 - chr3L_22_9010001 chr3L_9010001 RAL-361 1798 chr3L 9036264 9036277 chr3L 9036400 9036407 5 135 26.0 19.0 22.5 0.2 143 chr3L 9036264 intergenic not near genes chr3L 9036336 intergenic not near genes chr3L 9036407 intergenic not near genes chr3L_5_9035001 chr3L_9035001 RAL-361 1799 chr3L 9036278 9036286 chr3L 9036391 9036407 4 126 22.5 17.5 20.0 0.2 129 chr3L 9036278 intergenic not near genes chr3L 9036342 intergenic not near genes chr3L 9036407 intergenic not near genes chr3L_4_9035001 chr3L_9035001 RAL-361 1800 chr3L 9047045 9047110 chr3L 9047182 9047247 9 137 0.0 7.0 3.5 2.0 202 chr3L 9047045 intergenic CG5144 + chr3L 9047146 intergenic CG5144 + chr3L 9047247 intergenic CG5144 + chr3L_9_9045001 chr3L_9045001 RAL-361 1801 chr3L 9076877 9076949 chr3L 9084487 9084559 412 34 7608 10.5 9.5 10.0 3.1 7682 chr3L 9076877 exon Tequila + chr3L 9080718 intron Tequila + chr3L 9084559 exon Tequila + chr3L_34_9080001 chr3L_9080001 RAL-361 1802 chr3L 9110030 9110049 chr3L 9110263 9110282 7 233 6.0 18.5 12.2 0.5 252 chr3L 9110030 intron bol - chr3L 9110156 intron bol - chr3L 9110282 intron bol - chr3L_7_9110001 chr3L_9110001 RAL-361 1803 chr3L 9118336 9118343 chr3L 9118459 9118481 5 138 15.0 20.0 17.5 0.3 145 chr3L 9118336 intron bol - chr3L 9118408 intron bol - chr3L 9118481 intron bol - chr3L_5_9115001 chr3L_9115001 RAL-361 1804 chr3L 9125894 9125905 chr3L 9126058 9126069 4 164 18.0 9.0 13.5 0.3 175 chr3L 9125894 intron bol - chr3L 9125982 intron bol - chr3L 9126069 intron bol - chr3L_4_9125001 chr3L_9125001 RAL-361 1805 chr3L 9130512 9130574 chr3L 9134323 9134381 412 25 3808 6.0 8.5 7.2 3.0 3869 chr3L 9130512 intergenic bol - chr3L 9132446 intergenic not near genes chr3L 9134381 intergenic Dhpr + chr3L_25_9130001 chr3L_9130001 RAL-361 1806 chr3L 9150624 9150642 chr3L 9150748 9150768 9 126 9.0 19.0 14.0 0.6 144 chr3L 9150624 3` UTR Rdl - chr3L 9150696 3` UTR Rdl - chr3L 9150768 3` UTR Rdl - chr3L_9_9150001 chr3L_9150001 RAL-361 1807 chr3L 9164661 9164684 chr3L 9166178 9166201 hobo 9 1517 13.5 0.0 6.8 1.2 1540 chr3L 9164661 intron Rdl - chr3L 9165431 intron Rdl - chr3L 9166201 intron Rdl - chr3L_9_9165001 chr3L_9165001 RAL-361 1808 chr3L 9219212 9219261 chr3L 9219924 9219974 jockey 11 713 7.0 8.0 7.5 1.3 762 chr3L 9219212 intergenic not near genes chr3L 9219593 intergenic not near genes chr3L 9219974 intergenic not near genes chr3L_11_9215001 chr3L_9215001 RAL-361 1809 chr3L 9256810 9256844 chr3L 9256938 9256972 19 128 14.0 6.0 10.0 1.7 162 chr3L 9256810 intron GluRIB + chr3L 9256891 intron GluRIB + chr3L 9256972 intron GluRIB + chr3L_19_9255001 chr3L_9255001 RAL-361 1810 chr3L 9270583 9270590 chr3L 9278384 9278385 roo 5 7800 19.0 8.5 13.8 0.3 7802 chr3L 9270583 intron GluRIB + chr3L 9274484 intron GluRIB + chr3L 9278385 intron GluRIB + chr3L_5_9270001 chr3L_9270001 RAL-361 1811 chr3L 9270594 9270650 chr3L 9278380 9278426 roo 12 7787 6.5 8.0 7.2 1.5 7832 chr3L 9270594 intron GluRIB + chr3L 9274510 intron GluRIB + chr3L 9278426 exon GluRIB + chr3L_12_9270001 chr3L_9270001 RAL-361 1812 chr3L 9307796 9307796 chr3L 18417066 18417066 4 9109270 18.0 28.0 23.0 0.2 9109270 chr3L 9307796 intergenic not near genes chr3L 13862431 intron CG8745 - chr3L 18417066 intergenic not near genes chr3L_4_13860001 chr3L_13860001 RAL-361 1813 chr3L 9307796 9307796 chr3L 22908066 22908066 8 13600270 18.0 48.5 33.2 0.2 13600270 chr3L 9307796 intergenic not near genes chr3L 16107931 intron Zn72D - chr3L 22908066 intergenic not near genes chr3L_8_16105001 chr3L_16105001 RAL-361 1814 chr3L 9320357 9320429 chr3L 9320488 9320560 32 127 11.0 8.5 9.8 3.0 203 chr3L 9320357 intergenic not near genes chr3L 9320458 intergenic not near genes chr3L 9320560 intergenic not near genes chr3L_32_9320001 chr3L_9320001 RAL-361 1815 chr3L 9392440 9392502 chr3L 9395296 9395372 Doc 7 2869 3.0 10.5 6.8 0.9 2932 chr3L 9392440 intron CG4080 - chr3L 9393906 intron CG4080 - chr3L 9395372 intron CG4080 - chr3L_7_9390001 chr3L_9390001 RAL-361 1816 chr3L 9498160 9498171 chr3L 9498287 9498298 7 127 17.5 5.0 11.2 0.6 138 chr3L 9498160 intron path - chr3L 9498229 intron path - chr3L 9498298 intron path - chr3L_7_9495001 chr3L_9495001 RAL-361 1817 chr3L 9498174 9498215 chr3L 9498276 9498342 12 125 11.0 6.5 8.8 1.2 168 chr3L 9498174 intron path - chr3L 9498258 intron path - chr3L 9498342 intron path - chr3L_12_9495001 chr3L_9495001 RAL-361 1818 chr3L 9501660 9501723 chr3L 9502196 9502259 roo 26 535 7.0 12.5 9.8 2.4 599 chr3L 9501660 intron path - chr3L 9501960 intron path - chr3L 9502259 intron path - chr3L_26_9500001 chr3L_9500001 RAL-361 1819 chr3L 9503414 9503433 chr3L 9503553 9503572 8 139 15.5 17.5 16.5 0.5 158 chr3L 9503414 intron path - chr3L 9503493 intron path - chr3L 9503572 intron path - chr3L_8_9500001 chr3L_9500001 RAL-361 1820 chr3L 9506669 9506695 chr3L 9506803 9506829 10 134 8.0 16.5 12.2 0.8 160 chr3L 9506669 intergenic CG3408 - chr3L 9506749 intergenic CG3408 - chr3L 9506829 3` UTR CG3408 - chr3L_10_9505001 chr3L_9505001 RAL-361 1821 chr3L 9513405 9513470 chr3L 9513542 9513606 34 137 9.5 7.5 8.5 3.6 201 chr3L 9513405 exon CG33702 - chr3L 9513506 intergenic CG33702 - chr3L 9513606 intergenic CG33702 - chr3L_34_9510001 chr3L_9510001 RAL-361 1822 chr3L 9533732 9533780 chr3L 9541321 9541383 412 10 7597 4.5 7.0 5.8 1.5 7651 chr3L 9533732 intergenic not near genes chr3L 9537558 intergenic not near genes chr3L 9541383 intergenic not near genes chr3L_10_9535001 chr3L_9535001 RAL-361 1823 chr3L 9546655 9546676 chr3L 9546815 9546836 9 160 0.0 16.5 8.2 1.0 181 chr3L 9546655 intergenic not near genes chr3L 9546746 intergenic CG42673 + chr3L 9546836 intergenic CG42673 + chr3L_9_9545001 chr3L_9545001 RAL-361 1824 chr3L 9571877 9571927 chr3L 9572275 9572325 jockey 20 398 5.5 12.5 9.0 2.0 448 chr3L 9571877 intron CG42673 + chr3L 9572101 intron CG42673 + chr3L 9572325 intron CG42673 + chr3L_20_9570001 chr3L_9570001 RAL-361 1825 chr3L 9575868 9575936 chr3L 9580996 9581065 jockey 22 5127 8.5 11.5 10.0 2.0 5197 chr3L 9575868 intron CG42673 + chr3L 9578466 intron CG42673 + chr3L 9581065 intron CG42673 + chr3L_22_9575001 chr3L_9575001 RAL-361 1826 chr3L 9596629 9596700 chr3L 9596756 9596827 26 124 10.0 6.5 8.2 2.8 198 chr3L 9596629 3` UTR CG42673 + chr3L 9596728 intergenic CG42673 + chr3L 9596827 intergenic CG42673 + chr3L_26_9595001 chr3L_9595001 RAL-361 1827 chr3L 9637820 9637873 chr3L 9637939 9638005 23 131 9.5 8.5 9.0 2.3 185 chr3L 9637820 exon fry - chr3L 9637912 intron fry - chr3L 9638005 intron fry - chr3L_23_9635001 chr3L_9635001 RAL-361 1828 chr3L 9638974 9639055 chr3L 9639113 9639190 18 136 0.0 5.0 2.5 5.1 216 chr3L 9638974 intron,3` UTR fry -,CG8329 + chr3L 9639082 intron fry - chr3L 9639190 intron fry - chr3L_18_9635001 chr3L_9635001 RAL-361 1829 chr3L 9689465 9689530 chr3L 9689595 9689660 28 130 8.0 10.5 9.2 2.7 195 chr3L 9689465 intron CG6767 - chr3L 9689562 intron CG6767 - chr3L 9689660 intron CG6767 - chr3L_28_9685001 chr3L_9685001 RAL-361 1830 chr3L 9697730 9697790 chr3L 9697872 9697932 23 142 9.0 9.0 9.0 2.3 202 chr3L 9697730 intergenic not near genes chr3L 9697831 intergenic not near genes chr3L 9697932 intergenic UbcD4 + chr3L_23_9695001 chr3L_9695001 RAL-361 1831 chr3L 9715554 9715571 chr3L 9715680 9715697 8 126 20.5 10.0 15.2 0.5 143 chr3L 9715554 intron vsg + chr3L 9715626 intron vsg + chr3L 9715697 intron vsg + chr3L_8_9715001 chr3L_9715001 RAL-361 1832 chr3L 9715573 9715599 chr3L 9715678 9715725 11 122 15.0 11.0 13.0 0.8 152 chr3L 9715573 intron vsg + chr3L 9715649 intron vsg + chr3L 9715725 intron vsg + chr3L_11_9715001 chr3L_9715001 RAL-361 1833 chr3L 9809686 9809738 chr3L 9809813 9809865 11 124 10.0 10.5 10.2 1.0 179 chr3L 9809686 intergenic not near genes chr3L 9809776 intergenic not near genes chr3L 9809865 intergenic not near genes chr3L_11_9805001 chr3L_9805001 RAL-361 1834 chr3L 9831670 9831724 chr3L 9831801 9831855 29 131 6.5 11.0 8.8 3.0 185 chr3L 9831670 intron CG43897 + chr3L 9831762 intron CG43897 + chr3L 9831855 intron CG43897 + chr3L_29_9830001 chr3L_9830001 RAL-361 1835 chr3L 9835389 9835438 chr3L 9835529 9835578 20 140 6.0 11.5 8.8 2.0 189 chr3L 9835389 exon I-2 - chr3L 9835484 intron I-2 - chr3L 9835578 intron I-2 - chr3L_20_9835001 chr3L_9835001 RAL-361 1836 chr3L 9895311 9895390 chr3L 9895440 9895496 25 127 8.0 9.0 8.5 2.6 185 chr3L 9895311 3` UTR CG6707 - chr3L 9895404 3` UTR CG6707 - chr3L 9895496 3` UTR CG6707 - chr3L_25_9895001 chr3L_9895001 RAL-361 1837 chr3L 9918837 9918907 chr3L 9918977 9919052 30 142 7.0 9.0 8.0 3.3 215 chr3L 9918837 intron CG34356 + chr3L 9918944 intron CG34356 + chr3L 9919052 intron CG34356 + chr3L_30_9915001 chr3L_9915001 RAL-361 1838 chr3L 9922022 9922095 chr3L 9922196 9922264 20 165 6.5 7.0 6.8 2.6 242 chr3L 9922022 intron CG34356 + chr3L 9922143 intron CG34356 + chr3L 9922264 intron CG34356 + chr3L_20_9920001 chr3L_9920001 RAL-361 1839 chr3L 9929626 9929696 chr3L 9938456 9938496 roo 25 8828 9.5 7.5 8.5 2.6 8870 chr3L 9929626 intron CG34356 + chr3L 9934061 intron CG34356 + chr3L 9938496 intron CG34356 + chr3L_25_9930001 chr3L_9930001 RAL-361 1840 chr3L 9940480 9940511 chr3L 9940607 9940673 6 156 9.5 5.0 7.2 0.7 193 chr3L 9940480 intron CG34356 + chr3L 9940576 intron CG34356 + chr3L 9940673 intron CG34356 + chr3L_6_9940001 chr3L_9940001 RAL-361 1841 chr3L 10004047 10004113 chr3L 10004177 10004243 18 129 5.0 6.5 5.8 2.6 196 chr3L 10004047 exon dpr6 + chr3L 10004145 intron dpr6 + chr3L 10004243 intron dpr6 + chr3L_18_10000001 chr3L_10000001 RAL-361 1842 chr3L 10007142 10007203 chr3L 10007294 10007356 27 153 7.5 4.5 6.0 3.9 214 chr3L 10007142 intron dpr6 + chr3L 10007249 intron dpr6 + chr3L 10007356 intron dpr6 + chr3L_27_10005001 chr3L_10005001 RAL-361 1843 chr3L 10032499 10032566 chr3L 10032635 10032703 9 136 0.0 4.0 2.0 3.0 204 chr3L 10032499 intron dpr6 + chr3L 10032601 intron dpr6 + chr3L 10032703 intron dpr6 + chr3L_9_10030001 chr3L_10030001 RAL-361 1844 chr3L 10085417 10085466 chr3L 10085575 10085624 19 158 7.0 10.0 8.5 2.0 207 chr3L 10085417 intron dpr6 + chr3L 10085520 intron dpr6 + chr3L 10085624 intron dpr6 + chr3L_19_10085001 chr3L_10085001 RAL-361 1845 chr3L 10199492 10199560 chr3L 10199690 10199758 24 198 2.0 8.0 5.0 4.0 266 chr3L 10199492 intron ect - chr3L 10199625 intron ect - chr3L 10199758 intron ect - chr3L_24_10195001 chr3L_10195001 RAL-361 1846 chr3L 10214685 10214828 chr3L 10214821 10214980 16 174 0.0 0.0 0.0 16.0 295 chr3L 10214685 intergenic not near genes chr3L 10214832 intergenic not near genes chr3L 10214980 intergenic not near genes chr3L_16_10210001 chr3L_10210001 RAL-361 1847 chr3L 10219737 10219808 chr3L 10220299 10220370 37 561 5.5 8.5 7.0 4.6 633 chr3L 10219737 exon CG32055 - chr3L 10220054 exon CG32055 - chr3L 10220370 intergenic scramb1 -,CG32055 - chr3L_37_10220001 chr3L_10220001 RAL-361 1848 chr3L 10222700 10222768 chr3L 10222830 10222898 21 127 1.0 11.0 6.0 3.0 198 chr3L 10222700 intron scramb1 - chr3L 10222799 intron scramb1 - chr3L 10222898 intron scramb1 - chr3L_21_10220001 chr3L_10220001 RAL-361 1849 chr3L 10246023 10246068 chr3L 10246176 10246221 11 153 0.0 7.5 3.8 2.3 198 chr3L 10246023 intergenic not near genes chr3L 10246122 intergenic not near genes chr3L 10246221 intergenic not near genes chr3L_11_10245001 chr3L_10245001 RAL-361 1850 chr3L 10282247 10282261 chr3L 10282386 10282400 7 139 10.0 7.5 8.8 0.7 153 chr3L 10282247 intergenic not near genes chr3L 10282324 intergenic not near genes chr3L 10282400 intergenic not near genes chr3L_7_10280001 chr3L_10280001 RAL-361 1851 chr3L 10298622 10298694 chr3L 10298754 10298831 15 134 0.0 3.5 1.8 5.4 209 chr3L 10298622 intergenic not near genes chr3L 10298726 intergenic not near genes chr3L 10298831 intergenic not near genes chr3L_15_10295001 chr3L_10295001 RAL-361 1852 chr3L 10308701 10308754 chr3L 10308828 10308881 24 126 1.0 12.0 6.5 3.2 180 chr3L 10308701 intergenic not near genes chr3L 10308791 intergenic not near genes chr3L 10308881 intergenic not near genes chr3L_24_10305001 chr3L_10305001 RAL-361 1853 chr3L 10314086 10314159 chr3L 10314222 10314269 25 134 5.5 9.0 7.2 3.0 183 chr3L 10314086 intergenic not near genes chr3L 10314178 intergenic not near genes chr3L 10314269 intergenic not near genes chr3L_25_10310001 chr3L_10310001 RAL-361 1854 chr3L 10360887 10360948 chr3L 10361518 10361576 7 628 51.0 22.0 36.5 0.2 689 chr3L 10360887 5` UTR CR44327 + chr3L 10361232 5` UTR CR44327 + chr3L 10361576 5` UTR CR44327 + chr3L_7_10360001 chr3L_10360001 RAL-361 1855 chr3L 10414910 10414971 chr3L 10417317 10417338 Doc 14 2417 7.5 6.0 6.8 1.8 2428 chr3L 10414910 intergenic CG12362 + chr3L 10416124 intergenic not near genes chr3L 10417338 intergenic not near genes chr3L_14_10415001 chr3L_10415001 RAL-361 1856 chr3L 10469895 10469927 chr3L 10470021 10470053 16 126 18.0 1.5 9.8 1.5 158 chr3L 10469895 intergenic not near genes chr3L 10469974 intergenic not near genes chr3L 10470053 intergenic not near genes chr3L_16_10465001 chr3L_10465001 RAL-361 1857 chr3L 10496277 10496330 chr3L 10496414 10496468 13 136 11.0 5.0 8.0 1.4 191 chr3L 10496277 intron A2bp1 + chr3L 10496372 intron A2bp1 + chr3L 10496468 intron A2bp1 + chr3L_13_10495001 chr3L_10495001 RAL-361 1858 chr3L 10509446 10509466 chr3L 10509625 10509645 13 179 23.0 0.0 11.5 1.0 199 chr3L 10509446 intron A2bp1 + chr3L 10509546 intron A2bp1 + chr3L 10509645 intron A2bp1 + chr3L_13_10505001 chr3L_10505001 RAL-361 1859 chr3L 10600411 10600477 chr3L 10600543 10600609 24 131 6.0 6.5 6.2 3.3 198 chr3L 10600411 intergenic not near genes chr3L 10600510 intergenic not near genes chr3L 10600609 intergenic not near genes chr3L_24_10600001 chr3L_10600001 RAL-361 1860 chr3L 10610176 10610241 chr3L 10610303 10610368 20 127 9.5 9.5 9.5 1.9 192 chr3L 10610176 intergenic not near genes chr3L 10610272 intergenic not near genes chr3L 10610368 intergenic not near genes chr3L_20_10610001 chr3L_10610001 RAL-361 1861 chr3L 10611272 10611333 chr3L 10611397 10611459 7 124 7.5 12.0 9.8 0.6 187 chr3L 10611272 intergenic not near genes chr3L 10611366 intergenic not near genes chr3L 10611459 intergenic not near genes chr3L_7_10610001 chr3L_10610001 RAL-361 1862 chr3L 10614743 10614797 chr3L 10614880 10614926 13 131 0.0 7.0 3.5 2.9 183 chr3L 10614743 intergenic not near genes chr3L 10614834 intergenic not near genes chr3L 10614926 intergenic not near genes chr3L_13_10610001 chr3L_10610001 RAL-361 1863 chr3L 10621823 10621863 chr3L 10621960 10622000 11 137 4.0 5.5 4.8 1.9 177 chr3L 10621823 intergenic not near genes chr3L 10621912 intergenic not near genes chr3L 10622000 intergenic not near genes chr3L_11_10620001 chr3L_10620001 RAL-361 1864 chr3L 10650994 10650997 chr3L 10651129 10651132 5 135 2.5 8.0 5.2 0.8 138 chr3L 10650994 intron CG32066 - chr3L 10651063 intron CG32066 - chr3L 10651132 intron CG32066 - chr3L_5_10650001 chr3L_10650001 RAL-361 1865 chr3L 10654098 10654108 chr3L 10654217 10654240 4 131 19.5 4.0 11.8 0.3 142 chr3L 10654098 intron CG32066 - chr3L 10654169 intron CG32066 - chr3L 10654240 intron CG32066 - chr3L_4_10650001 chr3L_10650001 RAL-361 1866 chr3L 10654114 10654125 chr3L 10654216 10654247 4 121 16.5 4.0 10.2 0.4 133 chr3L 10654114 intron CG32066 - chr3L 10654180 intron CG32066 - chr3L 10654247 intron CG32066 - chr3L_4_10650001 chr3L_10650001 RAL-361 1867 chr3L 10654136 10654156 chr3L 10654211 10654283 6 115 8.0 5.0 6.5 0.8 147 chr3L 10654136 intron CG32066 - chr3L 10654210 intron CG32066 - chr3L 10654283 intron CG32066 - chr3L_6_10650001 chr3L_10650001 RAL-361 1868 chr3L 10658059 10658205 chr3L 10658186 10658382 27 160 0.0 0.0 0.0 27.0 323 chr3L 10658059 intron CG32066 - chr3L 10658220 intron CG32066 - chr3L 10658382 intron CG32066 - chr3L_27_10655001 chr3L_10655001 RAL-361 1869 chr3L 10694904 10694930 chr3L 10695035 10695072 12 141 0.0 8.0 4.0 2.4 168 chr3L 10694904 intron NijA - chr3L 10694988 intron NijA - chr3L 10695072 exon NijA - chr3L_12_10690001 chr3L_10690001 RAL-361 1870 chr3L 10721393 10721422 chr3L 10721546 10721572 15 151 8.0 17.5 12.8 1.1 179 chr3L 10721393 intergenic not near genes chr3L 10721482 intergenic not near genes chr3L 10721572 intergenic not near genes chr3L_15_10720001 chr3L_10720001 RAL-361 1871 chr3L 10721953 10721994 chr3L 10722085 10722109 7 130 18.5 0.0 9.2 0.7 156 chr3L 10721953 intergenic not near genes chr3L 10722031 intergenic not near genes chr3L 10722109 intergenic not near genes chr3L_7_10720001 chr3L_10720001 RAL-361 1872 chr3L 10735801 10735832 chr3L 10735940 10735971 12 139 7.5 13.5 10.5 1.0 170 chr3L 10735801 intergenic not near genes chr3L 10735886 intergenic not near genes chr3L 10735971 intergenic not near genes chr3L_12_10735001 chr3L_10735001 RAL-361 1873 chr3L 10762795 10762849 chr3L 10762914 10762977 25 130 9.0 10.5 9.8 2.3 182 chr3L 10762795 intergenic not near genes chr3L 10762886 intergenic not near genes chr3L 10762977 intergenic not near genes chr3L_25_10760001 chr3L_10760001 RAL-361 1874 chr3L 10770452 10770482 chr3L 10770583 10770613 12 131 10.5 0.0 5.2 1.9 161 chr3L 10770452 intergenic not near genes chr3L 10770532 intergenic not near genes chr3L 10770613 intergenic not near genes chr3L_12_10770001 chr3L_10770001 RAL-361 1875 chr3L 10820460 10820523 chr3L 10820659 10820718 7 198 4.0 2.5 3.2 1.7 258 chr3L 10820460 intergenic not near genes chr3L 10820589 intergenic not near genes chr3L 10820718 intergenic not near genes chr3L_7_10820001 chr3L_10820001 RAL-361 1876 chr3L 10893515 10893576 chr3L 10893653 10893714 8 138 5.5 8.0 6.8 1.0 199 chr3L 10893515 intergenic CR45171 - chr3L 10893614 intergenic CR45171 - chr3L 10893714 3` UTR CR45171 - chr3L_8_10890001 chr3L_10890001 RAL-361 1877 chr3L 10907957 10907964 chr3L 10908083 10908090 5 126 11.5 0.0 5.8 0.7 133 chr3L 10907957 intergenic not near genes chr3L 10908024 intergenic not near genes chr3L 10908090 intergenic not near genes chr3L_5_10905001 chr3L_10905001 RAL-361 1878 chr3L 10951252 10951296 chr3L 10951378 10951422 10 126 0.0 13.0 6.5 1.3 170 chr3L 10951252 intergenic not near genes chr3L 10951337 intergenic not near genes chr3L 10951422 intergenic not near genes chr3L_10_10950001 chr3L_10950001 RAL-361 1879 chr3L 11000057 11000091 chr3L 11000160 11000187 6 114 5.5 13.0 9.2 0.6 130 chr3L 11000057 intron klu - chr3L 11000122 intron klu - chr3L 11000187 intron klu - chr3L_6_11000001 chr3L_11000001 RAL-361 1880 chr3L 11053616 11053681 chr3L 11053751 11053810 15 133 0.0 7.0 3.5 3.3 194 chr3L 11053616 intergenic CG7888 + chr3L 11053713 intergenic CG7888 + chr3L 11053810 intergenic CG7888 + chr3L_15_11050001 chr3L_11050001 RAL-361 1881 chr3L 11087011 11087087 chr3L 11088849 11088926 S-element 22 1836 4.5 9.0 6.8 2.8 1915 chr3L 11087011 intron JIL-1 - chr3L 11087968 intron JIL-1 - chr3L 11088926 intron JIL-1 - chr3L_22_11085001 chr3L_11085001 RAL-361 1882 chr3L 11135481 11135526 chr3L 11135761 11135806 17 280 8.5 0.0 4.2 3.3 325 chr3L 11135481 intergenic CG14143 + chr3L 11135644 intergenic CG14143 +,CG32082 + chr3L 11135806 intergenic CG32082 +,CG14143 + chr3L_17_11135001 chr3L_11135001 RAL-361 1883 chr3L 11236037 11236064 chr3L 11236329 11236356 9 292 17.5 0.5 9.0 0.9 319 chr3L 11236037 5` UTR Ir68a - chr3L 11236196 5` UTR Ir68a - chr3L 11236356 intergenic Ir68a -,CR44718 - chr3L_9_11235001 chr3L_11235001 RAL-361 1884 chr3L 11241728 11241784 chr3L 11241860 11241916 16 132 4.5 5.0 4.8 2.8 188 chr3L 11241728 intergenic not near genes chr3L 11241822 intergenic not near genes chr3L 11241916 intergenic not near genes chr3L_16_11240001 chr3L_11240001 RAL-361 1885 chr3L 11248360 11248423 chr3L 11248523 11248586 21 160 11.0 10.5 10.8 1.8 226 chr3L 11248360 5` UTR CR44717 + chr3L 11248473 5` UTR CR44717 + chr3L 11248586 5` UTR CR44717 + chr3L_21_11245001 chr3L_11245001 RAL-361 1886 chr3L 11264428 11264487 chr3L 11271430 11271489 17.6 22 7001 11.0 12.0 11.5 1.8 7061 chr3L 11264428 intergenic not near genes chr3L 11267958 intergenic not near genes chr3L 11271489 intergenic not near genes chr3L_22_11265001 chr3L_11265001 RAL-361 1887 chr3L 11304792 11304802 chr3L 11304939 11304949 11 147 13.0 0.0 6.5 1.5 157 chr3L 11304792 intergenic not near genes chr3L 11304870 intergenic not near genes chr3L 11304949 intergenic not near genes chr3L_11_11300001 chr3L_11300001 RAL-361 1888 chr3L 11329643 11329716 chr3L 11332895 11332956 jockey 17 3252 9.0 6.0 7.5 2.0 3313 chr3L 11329643 intergenic not near genes chr3L 11331300 intergenic not near genes chr3L 11332956 intergenic not near genes chr3L_17_11330001 chr3L_11330001 RAL-361 1889 chr3L 11385554 11385619 chr3L 11385844 11385914 19 284 7.5 6.5 7.0 2.4 360 chr3L 11385554 intergenic not near genes chr3L 11385734 intergenic not near genes chr3L 11385914 intergenic not near genes chr3L_19_11385001 chr3L_11385001 RAL-361 1890 chr3L 11418337 11418347 chr3L 11418543 11418553 5 206 9.0 7.5 8.2 0.5 216 chr3L 11418337 intergenic not near genes chr3L 11418445 intergenic not near genes chr3L 11418553 intergenic not near genes chr3L_5_11415001 chr3L_11415001 RAL-361 1891 chr3L 11432870 11432920 chr3L 11432999 11433049 24 129 2.0 12.0 7.0 3.0 179 chr3L 11432870 intergenic not near genes chr3L 11432960 intergenic not near genes chr3L 11433049 intergenic not near genes chr3L_24_11430001 chr3L_11430001 RAL-361 1892 chr3L 11435518 11435585 chr3L 11435737 11435804 25 219 7.5 8.0 7.8 2.8 286 chr3L 11435518 intergenic CG6149 -,CR44548 + chr3L 11435661 5` UTR CR44548 + chr3L 11435804 5` UTR CR44548 + chr3L_25_11435001 chr3L_11435001 RAL-361 1893 chr3L 11441350 11441362 chr3L 11441479 11441491 5 129 0.0 9.0 4.5 0.9 141 chr3L 11441350 intergenic not near genes chr3L 11441420 intergenic not near genes chr3L 11441491 intergenic not near genes chr3L_5_11440001 chr3L_11440001 RAL-361 1894 chr3L 11443417 11443429 chr3L 11443554 11443566 7 137 13.0 12.5 12.8 0.5 149 chr3L 11443417 intergenic not near genes chr3L 11443492 intergenic not near genes chr3L 11443566 intergenic not near genes chr3L_7_11440001 chr3L_11440001 RAL-361 1895 chr3L 11456857 11456905 chr3L 11457006 11457054 19 149 8.0 9.0 8.5 2.0 197 chr3L 11456857 intergenic CG12289 - chr3L 11456956 intergenic CG12289 - chr3L 11457054 intergenic CG12289 - chr3L_19_11455001 chr3L_11455001 RAL-361 1896 chr3L 11493106 11493183 chr3L 11493238 11493315 23 132 7.5 4.5 6.0 3.3 209 chr3L 11493106 intron chrb + chr3L 11493210 intron chrb + chr3L 11493315 intron chrb + chr3L_23_11490001 chr3L_11490001 RAL-361 1897 chr3L 11528182 11528257 chr3L 11528313 11528388 35 130 7.0 8.0 7.5 4.1 206 chr3L 11528182 intron Mob2 - chr3L 11528285 intron Mob2 - chr3L 11528388 intron Mob2 - chr3L_35_11525001 chr3L_11525001 RAL-361 1898 chr3L 11541160 11541212 chr3L 11541290 11541341 15 129 10.5 4.5 7.5 1.8 181 chr3L 11541160 intron Mob2 - chr3L 11541250 intron Mob2 - chr3L 11541341 intron Mob2 - chr3L_15_11540001 chr3L_11540001 RAL-361 1899 chr3L 11542627 11542700 chr3L 11542760 11542833 38 132 7.5 8.5 8.0 4.2 206 chr3L 11542627 intron Mob2 - chr3L 11542730 intron Mob2 - chr3L 11542833 intron Mob2 - chr3L_38_11540001 chr3L_11540001 RAL-361 1900 chr3L 11543706 11543709 chr3L 11543880 11543881 5 174 20.5 0.0 10.2 0.4 175 chr3L 11543706 intron Mob2 - chr3L 11543794 intron Mob2 - chr3L 11543881 intron Mob2 - chr3L_5_11540001 chr3L_11540001 RAL-361 1901 chr3L 11553694 11553730 chr3L 11553846 11553882 17 152 6.0 12.0 9.0 1.7 188 chr3L 11553694 intron Mob2 - chr3L 11553788 intron Mob2 - chr3L 11553882 intron Mob2 - chr3L_17_11550001 chr3L_11550001 RAL-361 1902 chr3L 11580612 11580649 chr3L 11580750 11580787 10 138 0.0 11.0 5.5 1.5 175 chr3L 11580612 intergenic CG43391 - chr3L 11580700 intergenic CG43391 - chr3L 11580787 intergenic CG43391 - chr3L_10_11580001 chr3L_11580001 RAL-361 1903 chr3L 11648469 11648520 chr3L 11648602 11648653 14 133 10.0 0.0 5.0 2.3 184 chr3L 11648469 5` UTR RIOK1 - chr3L 11648561 intergenic RIOK1 -,CG7339 + chr3L 11648653 intergenic CG7339 +,RIOK1 - chr3L_14_11645001 chr3L_11645001 RAL-361 1904 chr3L 11663700 11663735 chr3L 11663875 11663899 18 173 17.0 0.0 8.5 1.9 199 chr3L 11663700 intron CG32085 - chr3L 11663800 intron CG32085 - chr3L 11663899 intron CG32085 - chr3L_18_11660001 chr3L_11660001 RAL-361 1905 chr3L 11678050 11678125 chr3L 11678187 11678252 29 136 5.5 7.0 6.2 4.0 202 chr3L 11678050 intron CG32085 - chr3L 11678151 intron CG32085 - chr3L 11678252 intron CG32085 - chr3L_29_11675001 chr3L_11675001 RAL-361 1906 chr3L 11723055 11723109 chr3L 11727900 11727954 Doc 26 4845 10.0 8.5 9.2 2.5 4899 chr3L 11723055 3` UTR Bmcp + chr3L 11725504 intron Bmcp + chr3L 11727954 3` UTR Bmcp + chr3L_26_11725001 chr3L_11725001 RAL-361 1907 chr3L 11740105 11740155 chr3L 11740247 11740298 20 146 9.5 11.0 10.2 1.8 193 chr3L 11740105 intron CG6024 - chr3L 11740202 intron CG6024 - chr3L 11740298 intron CG6024 - chr3L_20_11740001 chr3L_11740001 RAL-361 1908 chr3L 11743975 11744045 chr3L 11744133 11744202 26 158 6.0 1.0 3.5 5.8 227 chr3L 11743975 exon CG6024 - chr3L 11744088 intron CG6024 - chr3L 11744202 intron CG6024 - chr3L_26_11740001 chr3L_11740001 RAL-361 1909 chr3L 11750550 11750618 chr3L 11750742 11750799 14 191 5.5 3.0 4.2 2.7 249 chr3L 11750550 intron CG6024 - chr3L 11750674 intron CG6024 - chr3L 11750799 intron CG6024 - chr3L_14_11750001 chr3L_11750001 RAL-361 1910 chr3L 11755136 11755193 chr3L 11755265 11755319 27 124 16.0 12.0 14.0 1.8 183 chr3L 11755136 intron CG6024 - chr3L 11755228 intron CG6024 - chr3L 11755319 intron CG6024 - chr3L_27_11755001 chr3L_11755001 RAL-361 1911 chr3L 11770946 11771018 chr3L 11771082 11771154 24 136 6.5 8.5 7.5 2.8 208 chr3L 11770946 exon Muc68D - chr3L 11771050 exon Muc68D - chr3L 11771154 exon Muc68D - chr3L_24_11770001 chr3L_11770001 RAL-361 1912 chr3L 11772348 11772358 chr3L 11772486 11772496 6 138 0.0 9.5 4.8 1.0 148 chr3L 11772348 intergenic Muc68D - chr3L 11772422 intergenic Muc68D - chr3L 11772496 intergenic Muc68D - chr3L_6_11770001 chr3L_11770001 RAL-361 1913 chr3L 11810535 11810555 chr3L 11810663 11810683 9 128 6.5 20.5 13.5 0.6 148 chr3L 11810535 intron CG42255 - chr3L 11810609 intron CG42255 - chr3L 11810683 exon CG42255 - chr3L_9_11810001 chr3L_11810001 RAL-361 1914 chr3L 11811415 11811481 chr3L 11811543 11811609 41 128 11.5 12.0 11.8 3.2 194 chr3L 11811415 intron CG42255 - chr3L 11811512 intron CG42255 - chr3L 11811609 exon CG42255 - chr3L_41_11810001 chr3L_11810001 RAL-361 1915 chr3L 11846342 11846404 chr3L 11846512 11846544 7 166 1.5 0.0 0.8 3.9 202 chr3L 11846342 intergenic not near genes chr3L 11846443 intergenic not near genes chr3L 11846544 intergenic not near genes chr3L_7_11845001 chr3L_11845001 RAL-361 1916 chr3L 11849289 11849355 chr3L 11849439 11849505 23 149 8.0 7.5 7.8 2.6 216 chr3L 11849289 intergenic not near genes chr3L 11849397 intergenic not near genes chr3L 11849505 intergenic not near genes chr3L_23_11845001 chr3L_11845001 RAL-361 1917 chr3L 11864515 11864574 chr3L 11865849 11865919 pogo 19 1344 8.0 7.5 7.8 2.2 1404 chr3L 11864515 intron CG44837 - chr3L 11865217 intron CG44837 - chr3L 11865919 intron CG44837 - chr3L_19_11865001 chr3L_11865001 RAL-361 1918 chr3L 11910304 11910380 chr3L 11910439 11910513 15 134 0.0 4.5 2.2 4.7 209 chr3L 11910304 intron CG44837 - chr3L 11910408 intron CG44837 - chr3L 11910513 intron CG44837 - chr3L_15_11910001 chr3L_11910001 RAL-361 1919 chr3L 11943445 11943516 chr3L 11943596 11943667 38 151 7.5 11.0 9.2 3.7 222 chr3L 11943445 3` UTR Rpt4R + chr3L 11943556 intergenic Rpt4R +,CG5883 - chr3L 11943667 3` UTR CG5883 - chr3L_38_11940001 chr3L_11940001 RAL-361 1920 chr3L 11973858 11973931 chr3L 11973996 11974069 23 138 8.0 9.0 8.5 2.4 211 chr3L 11973858 intergenic CG42397 - chr3L 11973964 intergenic CG42397 - chr3L 11974069 intergenic CG42397 - chr3L_23_11970001 chr3L_11970001 RAL-361 1921 chr3L 12013861 12013931 chr3L 12014002 12014072 34 139 11.0 4.0 7.5 4.0 211 chr3L 12013861 intron rols - chr3L 12013966 intron rols - chr3L 12014072 intron rols - chr3L_34_12010001 chr3L_12010001 RAL-361 1922 chr3L 12052663 12052688 chr3L 12052802 12052827 10 139 19.5 7.0 13.2 0.7 164 chr3L 12052663 intron rols - chr3L 12052745 intron rols - chr3L 12052827 intron rols - chr3L_10_12050001 chr3L_12050001 RAL-361 1923 chr3L 12052689 12052732 chr3L 12052799 12052871 16 136 6.5 6.5 6.5 2.1 182 chr3L 12052689 intron rols - chr3L 12052780 intron rols - chr3L 12052871 intron rols - chr3L_16_12050001 chr3L_12050001 RAL-361 1924 chr3L 12075380 12075459 chr3L 12075519 12075593 18 135 6.5 0.0 3.2 4.3 213 chr3L 12075380 intron Sema-5c - chr3L 12075486 intron Sema-5c - chr3L 12075593 intron Sema-5c - chr3L_18_12075001 chr3L_12075001 RAL-361 1925 chr3L 12089034 12089107 chr3L 12089164 12089237 40 130 7.5 2.5 5.0 6.7 203 chr3L 12089034 exon CG17154 + chr3L 12089136 3` UTR CG17154 + chr3L 12089237 intergenic CG17154 + chr3L_40_12085001 chr3L_12085001 RAL-361 1926 chr3L 12092353 12092421 chr3L 12092480 12092548 17 126 2.5 7.0 4.8 2.9 195 chr3L 12092353 intergenic not near genes chr3L 12092450 intergenic not near genes chr3L 12092548 intergenic not near genes chr3L_17_12090001 chr3L_12090001 RAL-361 1927 chr3L 12094433 12094450 chr3L 12094549 12094555 5 115 18.5 3.0 10.8 0.4 122 chr3L 12094433 intergenic not near genes chr3L 12094494 intergenic not near genes chr3L 12094555 intergenic not near genes chr3L_5_12090001 chr3L_12090001 RAL-361 1928 chr3L 12119714 12119786 chr3L 12119861 12119933 30 147 9.0 10.0 9.5 2.9 219 chr3L 12119714 3` UTR ssp + chr3L 12119824 intergenic ssp +,CG11560 + chr3L 12119933 intergenic CG11560 +,ssp + chr3L_30_12115001 chr3L_12115001 RAL-361 1929 chr3L 12157127 12157192 chr3L 12158365 12158430 21 1238 65.0 58.0 61.5 0.3 1303 chr3L 12157127 3` UTR CG9760 - chr3L 12157778 3` UTR CG9760 - chr3L 12158430 intron CG9760 - chr3L_21_12155001 chr3L_12155001 RAL-361 1930 chr3L 12158449 12158523 chr3L 12158719 12158779 21 269 53.0 34.5 43.8 0.5 330 chr3L 12158449 intron CG9760 - chr3L 12158614 intron CG9760 - chr3L 12158779 intron CG9760 - chr3L_21_12155001 chr3L_12155001 RAL-361 1931 chr3L 12158779 12158793 chr3L 12160204 12160213 8 1421 122.0 131.0 126.5 0.1 1434 chr3L 12158779 intron CG9760 - chr3L 12159496 exon CG9760 - chr3L 12160213 intron CG9760 - chr3L_8_12155001 chr3L_12155001 RAL-361 1932 chr3L 12158776 12158833 chr3L 12160215 12160263 40 1428 147.5 124.5 136.0 0.3 1487 chr3L 12158776 intron CG9760 - chr3L 12159520 exon CG9760 - chr3L 12160263 intron CG9760 - chr3L_40_12155001 chr3L_12155001 RAL-361 1933 chr3L 12158833 12158844 chr3L 12160267 12160269 4 1426 151.0 92.0 121.5 0.0 1436 chr3L 12158833 intron CG9760 - chr3L 12159551 exon CG9760 - chr3L 12160269 intron CG9760 - chr3L_4_12155001 chr3L_12155001 RAL-361 1934 chr3L 12158842 12158855 chr3L 12160274 12160275 5 1427 150.5 87.0 118.8 0.0 1433 chr3L 12158842 intron CG9760 - chr3L 12159558 exon CG9760 - chr3L 12160275 intron CG9760 - chr3L_5_12155001 chr3L_12155001 RAL-361 1935 chr3L 12158834 12158837 chr3L 12160276 12160278 5 1432 147.5 86.0 116.8 0.0 1444 chr3L 12158834 intron CG9760 - chr3L 12159556 exon CG9760 - chr3L 12160278 intron CG9760 - chr3L_5_12155001 chr3L_12155001 RAL-361 1936 chr3L 12156437 12156516 chr3L 12160280 12160348 30 3837 71.5 84.5 78.0 0.4 3911 chr3L 12156437 3` UTR Nrx-IV + chr3L 12158392 intron CG9760 - chr3L 12160348 intron CG9760 - chr3L_30_12155001 chr3L_12155001 RAL-361 1937 chr3L 12170751 12170816 chr3L 12170883 12170948 15 132 5.0 7.0 6.0 2.1 197 chr3L 12170751 intron Rh7 - chr3L 12170850 intron Rh7 - chr3L 12170948 intron Rh7 - chr3L_15_12170001 chr3L_12170001 RAL-361 1938 chr3L 12186365 12186393 chr3L 12186531 12186559 11 166 6.5 6.5 6.5 1.5 194 chr3L 12186365 intron CG6910 + chr3L 12186462 intron CG6910 + chr3L 12186559 exon CG6910 + chr3L_11_12185001 chr3L_12185001 RAL-361 1939 chr3L 12369484 12369564 chr3L 12369624 12369704 40 140 7.0 7.5 7.2 4.9 220 chr3L 12369484 intron Ncc69 - chr3L 12369594 intron Ncc69 - chr3L 12369704 intron Ncc69 - chr3L_40_12365001 chr3L_12365001 RAL-361 1940 chr3L 12381490 12381552 chr3L 12381618 12381680 12 128 7.0 1.5 4.2 2.3 190 chr3L 12381490 intron Ncc69 - chr3L 12381585 intron Ncc69 - chr3L 12381680 intron Ncc69 - chr3L_12_12380001 chr3L_12380001 RAL-361 1941 chr3L 12406457 12406530 chr3L 12406738 12406811 35 281 8.0 6.5 7.2 4.3 354 chr3L 12406457 intron CG32103 - chr3L 12406634 intron CG32103 - chr3L 12406811 intron CG32103 - chr3L_35_12405001 chr3L_12405001 RAL-361 1942 chr3L 12458483 12458507 chr3L 12458632 12458656 14 149 6.0 16.0 11.0 1.2 173 chr3L 12458483 intergenic not near genes chr3L 12458570 intergenic not near genes chr3L 12458656 intergenic not near genes chr3L_14_12455001 chr3L_12455001 RAL-361 1943 chr3L 12460275 12460344 chr3L 12460402 12460471 20 122 0.0 8.0 4.0 4.0 196 chr3L 12460275 intergenic not near genes chr3L 12460373 intergenic not near genes chr3L 12460471 intergenic not near genes chr3L_20_12460001 chr3L_12460001 RAL-361 1944 chr3L 12476261 12476290 chr3L 12476387 12476416 4 126 12.5 4.0 8.2 0.4 155 chr3L 12476261 intron CG10663 - chr3L 12476338 intron CG10663 - chr3L 12476416 intron CG10663 - chr3L_4_12475001 chr3L_12475001 RAL-361 1945 chr3L 12491675 12491708 chr3L 12491808 12491841 8 132 0.0 9.0 4.5 1.5 166 chr3L 12491675 intergenic CG10657 -,CR45682 +,CR45681 + chr3L 12491758 intergenic CG10657 -,CR45682 + chr3L 12491841 3` UTR,5` UTR CG10657 -,CR45682 + chr3L_8_12490001 chr3L_12490001 RAL-361 1946 chr3L 12603959 12604037 chr3L 12604091 12604169 29 132 6.0 6.0 6.0 4.1 210 chr3L 12603959 intergenic not near genes chr3L 12604064 intergenic not near genes chr3L 12604169 intergenic not near genes chr3L_29_12600001 chr3L_12600001 RAL-361 1947 chr3L 12614557 12614599 chr3L 12614745 12614787 22 188 0.0 12.0 6.0 3.1 230 chr3L 12614557 intron caup + chr3L 12614672 intron caup + chr3L 12614787 intron caup + chr3L_22_12610001 chr3L_12610001 RAL-361 1948 chr3L 12626120 12626158 chr3L 12626279 12626317 15 159 5.0 7.5 6.2 2.1 197 chr3L 12626120 intergenic not near genes chr3L 12626218 intergenic not near genes chr3L 12626317 intergenic not near genes chr3L_15_12625001 chr3L_12625001 RAL-361 1949 chr3L 12647899 12647946 chr3L 12648025 12648061 18 124 8.5 1.0 4.8 3.1 162 chr3L 12647899 5` UTR CR32111 + chr3L 12647980 5` UTR CR32111 + chr3L 12648061 5` UTR CR32111 + chr3L_18_12645001 chr3L_12645001 RAL-361 1950 chr3L 12656251 12656331 chr3L 12656388 12656464 30 134 10.0 7.0 8.5 3.2 213 chr3L 12656251 intergenic not near genes chr3L 12656358 intergenic not near genes chr3L 12656464 intergenic not near genes chr3L_30_12655001 chr3L_12655001 RAL-361 1951 chr3L 12675127 12675146 chr3L 12675254 12675273 10 126 10.5 24.5 17.5 0.5 146 chr3L 12675127 intergenic not near genes chr3L 12675200 intergenic not near genes chr3L 12675273 intergenic not near genes chr3L_10_12675001 chr3L_12675001 RAL-361 1952 chr3L 12706601 12706655 chr3L 12706778 12706832 31 177 11.5 12.0 11.8 2.4 231 chr3L 12706601 intron mirr + chr3L 12706716 intron mirr + chr3L 12706832 intron mirr + chr3L_31_12705001 chr3L_12705001 RAL-361 1953 chr3L 12720284 12720353 chr3L 12720419 12720488 34 135 12.0 10.5 11.2 2.8 204 chr3L 12720284 intergenic not near genes chr3L 12720386 intergenic not near genes chr3L 12720488 intergenic not near genes chr3L_34_12720001 chr3L_12720001 RAL-361 1954 chr3L 12727986 12728044 chr3L 12728120 12728182 14 137 4.5 9.5 7.0 1.8 196 chr3L 12727986 intergenic not near genes chr3L 12728084 intergenic not near genes chr3L 12728182 intergenic not near genes chr3L_14_12725001 chr3L_12725001 RAL-361 1955 chr3L 12799807 12799825 chr3L 12799965 12799983 7 158 21.0 21.5 21.2 0.3 176 chr3L 12799807 intron Atg1 - chr3L 12799895 intron Atg1 - chr3L 12799983 intron Atg1 - chr3L_7_12795001 chr3L_12795001 RAL-361 1956 chr3L 12801944 12802008 chr3L 12802055 12802134 37 124 8.0 9.0 8.5 3.9 190 chr3L 12801944 intron Atg1 - chr3L 12802039 intron Atg1 - chr3L 12802134 intron Atg1 - chr3L_37_12800001 chr3L_12800001 RAL-361 1957 chr3L 12857965 12857992 chr3L 12858109 12858136 11 144 0.5 10.5 5.5 1.7 171 chr3L 12857965 3` UTR CG32107 - chr3L 12858050 3` UTR CG32107 - chr3L 12858136 3` UTR CG32107 - chr3L_11_12855001 chr3L_12855001 RAL-361 1958 chr3L 12874889 12874962 chr3L 12877231 12877304 jockey 23 2342 6.0 8.0 7.0 2.9 2415 chr3L 12874889 intergenic not near genes chr3L 12876096 intergenic not near genes chr3L 12877304 intergenic not near genes chr3L_23_12875001 chr3L_12875001 RAL-361 1959 chr3L 12894763 12894805 chr3L 12894891 12894930 23 127 18.0 12.5 15.2 1.4 167 chr3L 12894763 intergenic CG14118 + chr3L 12894846 intergenic CG14118 + chr3L 12894930 intergenic CG14118 + chr3L_23_12890001 chr3L_12890001 RAL-361 1960 chr3L 12919264 12919305 chr3L 12924757 12924832 Rt1c 7 5516 9.0 8.0 8.5 0.7 5568 chr3L 12919264 intergenic not near genes chr3L 12922048 intergenic not near genes chr3L 12924832 intergenic not near genes chr3L_7_12920001 chr3L_12920001 RAL-361 1961 chr3L 12929712 12929741 chr3L 12930078 12930107 11 366 0.0 10.5 5.2 1.8 395 chr3L 12929712 intergenic not near genes chr3L 12929910 intergenic not near genes chr3L 12930107 intergenic not near genes chr3L_11_12925001 chr3L_12925001 RAL-361 1962 chr3L 12943830 12943855 chr3L 12943971 12943996 13 141 11.5 0.0 5.8 1.9 166 chr3L 12943830 intergenic not near genes chr3L 12943913 intergenic not near genes chr3L 12943996 intergenic not near genes chr3L_13_12940001 chr3L_12940001 RAL-361 1963 chr3L 12957742 12957803 chr3L 12962274 12962335 copia 26 4532 16.5 9.5 13.0 1.9 4593 chr3L 12957742 intergenic not near genes chr3L 12960038 intergenic not near genes chr3L 12962335 intergenic not near genes chr3L_26_12960001 chr3L_12960001 RAL-361 1964 chr3L 13008746 13008822 chr3L 13008955 13008981 26 204 7.0 8.0 7.5 3.1 235 chr3L 13008746 exon CG14117 + chr3L 13008864 exon CG14117 + chr3L 13008981 exon CG14117 + chr3L_26_13005001 chr3L_13005001 RAL-361 1965 chr3L 13017868 13017906 chr3L 13018000 13018038 16 132 8.5 15.0 11.8 1.2 170 chr3L 13017868 intergenic mRpL20 -,ste14 +,CR45445 - chr3L 13017953 intergenic mRpL20 -,ste14 +,CR45445 - chr3L 13018038 intergenic mRpL20 -,ste14 +,CR45445 - chr3L_16_13015001 chr3L_13015001 RAL-361 1966 chr3L 13085009 13085078 chr3L 13085138 13085207 28 129 10.0 7.5 8.8 2.9 198 chr3L 13085009 intergenic not near genes chr3L 13085108 intergenic not near genes chr3L 13085207 intergenic not near genes chr3L_28_13085001 chr3L_13085001 RAL-361 1967 chr3L 13092021 13092101 chr3L 13092148 13092228 18 126 5.5 3.0 4.2 3.5 207 chr3L 13092021 intergenic not near genes chr3L 13092124 intergenic not near genes chr3L 13092228 intergenic not near genes chr3L_18_13090001 chr3L_13090001 RAL-361 1968 chr3L 13174220 13174270 chr3L 13174362 13174412 19 142 6.0 11.0 8.5 2.0 192 chr3L 13174220 intergenic snky + chr3L 13174316 intergenic snky + chr3L 13174412 intergenic snky + chr3L_19_13170001 chr3L_13170001 RAL-361 1969 chr3L 13194028 13194083 chr3L 13194157 13194212 28 129 10.5 9.0 9.8 2.6 184 chr3L 13194028 intergenic not near genes chr3L 13194120 intergenic not near genes chr3L 13194212 intergenic not near genes chr3L_28_13190001 chr3L_13190001 RAL-361 1970 chr3L 13261764 13261830 chr3L 13261904 13261970 29 139 7.0 4.0 5.5 4.5 206 chr3L 13261764 intron caps + chr3L 13261867 intron caps + chr3L 13261970 intron caps + chr3L_29_13260001 chr3L_13260001 RAL-361 1971 chr3L 13267239 13267296 chr3L 13267402 13267459 15 162 10.5 0.0 5.2 2.4 220 chr3L 13267239 intron caps + chr3L 13267349 intron caps + chr3L 13267459 intron caps + chr3L_15_13265001 chr3L_13265001 RAL-361 1972 chr3L 13289139 13289188 chr3L 13289483 13289536 21 359 6.0 8.0 7.0 2.6 397 chr3L 13289139 intergenic not near genes chr3L 13289338 intergenic not near genes chr3L 13289536 intergenic not near genes chr3L_21_13285001 chr3L_13285001 RAL-361 1973 chr3L 13315809 13315859 chr3L 13315946 13315996 24 136 8.0 1.0 4.5 4.4 187 chr3L 13315809 intergenic not near genes chr3L 13315902 intergenic not near genes chr3L 13315996 intergenic not near genes chr3L_24_13315001 chr3L_13315001 RAL-361 1974 chr3L 13337130 13337157 chr3L 13337271 13337298 15 140 0.0 5.0 2.5 4.3 168 chr3L 13337130 intergenic not near genes chr3L 13337214 intergenic not near genes chr3L 13337298 intergenic not near genes chr3L_15_13335001 chr3L_13335001 RAL-361 1975 chr3L 13338003 13338262 chr3L 13338148 13338446 6 170 11.0 12.5 11.8 0.5 443 chr3L 13338003 intergenic not near genes chr3L 13338224 intergenic not near genes chr3L 13338446 intergenic not near genes chr3L_6_13335001 chr3L_13335001 RAL-361 1976 chr3L 13338264 13338306 chr3L 13338448 13338490 22 183 5.0 13.0 9.0 2.2 226 chr3L 13338264 intergenic not near genes chr3L 13338377 intergenic not near genes chr3L 13338490 intergenic not near genes chr3L_22_13335001 chr3L_13335001 RAL-361 1977 chr3L 13361733 13361800 chr3L 13361868 13361934 26 133 5.5 7.5 6.5 3.5 201 chr3L 13361733 intergenic not near genes chr3L 13361834 intergenic not near genes chr3L 13361934 intergenic not near genes chr3L_26_13360001 chr3L_13360001 RAL-361 1978 chr3L 13392719 13392746 chr3L 13392852 13392879 6 133 15.0 0.0 7.5 0.7 160 chr3L 13392719 intergenic not near genes chr3L 13392799 intergenic not near genes chr3L 13392879 intergenic not near genes chr3L_6_13390001 chr3L_13390001 RAL-361 1979 chr3L 13396032 13396089 chr3L 13396167 13396223 29 134 10.5 12.5 11.5 2.3 191 chr3L 13396032 intergenic sens - chr3L 13396128 intergenic sens - chr3L 13396223 intergenic sens - chr3L_29_13395001 chr3L_13395001 RAL-361 1980 chr3L 13525114 13525127 chr3L 13532959 13532973 roo 7 7846 14.5 3.0 8.8 0.7 7859 chr3L 13525114 intergenic not near genes chr3L 13529044 intergenic not near genes chr3L 13532973 intergenic not near genes chr3L_7_13525001 chr3L_13525001 RAL-361 1981 chr3L 13525130 13525182 chr3L 13532958 13532997 roo 12 7842 7.0 3.0 5.0 2.0 7867 chr3L 13525130 intergenic not near genes chr3L 13529064 intergenic not near genes chr3L 13532997 intergenic not near genes chr3L_12_13525001 chr3L_13525001 RAL-361 1982 chr3L 13535869 13535928 chr3L 13535995 13536054 13 126 8.0 6.5 7.2 1.6 185 chr3L 13535869 intergenic not near genes chr3L 13535962 intergenic not near genes chr3L 13536054 intergenic not near genes chr3L_13_13535001 chr3L_13535001 RAL-361 1983 chr3L 13574582 13574620 chr3L 13580142 13580181 Rt1c 8 5561 15.5 10.0 12.8 0.6 5599 chr3L 13574582 intron bru-3 - chr3L 13577382 intron bru-3 - chr3L 13580181 intron bru-3 - chr3L_8_13575001 chr3L_13575001 RAL-361 1984 chr3L 13595998 13596037 chr3L 13596163 13596202 14 165 12.5 8.5 10.5 1.2 204 chr3L 13595998 intron bru-3 - chr3L 13596100 intron bru-3 - chr3L 13596202 intron bru-3 - chr3L_14_13595001 chr3L_13595001 RAL-361 1985 chr3L 13598173 13598213 chr3L 13598300 13598300 4 117 11.0 0.5 5.8 0.6 127 chr3L 13598173 intron bru-3 - chr3L 13598236 intron bru-3 - chr3L 13598300 intron bru-3 - chr3L_4_13595001 chr3L_13595001 RAL-361 1986 chr3L 13605297 13605362 chr3L 13605426 13605491 25 126 4.5 11.0 7.8 2.8 194 chr3L 13605297 intron bru-3 - chr3L 13605394 intron bru-3 - chr3L 13605491 intron bru-3 - chr3L_25_13605001 chr3L_13605001 RAL-361 1987 chr3L 13677479 13677707 chr3L 13677606 13677890 31 128 1.5 2.5 2.0 10.3 411 chr3L 13677479 intron bru-3 - chr3L 13677684 intron bru-3 - chr3L 13677890 intron bru-3 - chr3L_31_13675001 chr3L_13675001 RAL-361 1988 chr3L 13677738 13677761 chr3L 13677944 13677967 7 206 0.0 15.5 7.8 0.8 229 chr3L 13677738 intron bru-3 - chr3L 13677852 intron bru-3 - chr3L 13677967 intron bru-3 - chr3L_7_13675001 chr3L_13675001 RAL-361 1989 chr3L 13684514 13684574 chr3L 13684625 13684701 7 125 4.5 0.0 2.2 2.2 187 chr3L 13684514 intron bru-3 - chr3L 13684608 intron bru-3 - chr3L 13684701 intron bru-3 - chr3L_7_13680001 chr3L_13680001 RAL-361 1990 chr3L 13703404 13703460 chr3L 13703540 13703596 25 136 5.5 6.5 6.0 3.6 192 chr3L 13703404 intron bru-3 - chr3L 13703500 intron bru-3 - chr3L 13703596 intron bru-3 - chr3L_25_13700001 chr3L_13700001 RAL-361 1991 chr3L 13722395 13722469 chr3L 13722523 13722597 22 126 7.5 4.0 5.8 3.2 202 chr3L 13722395 intron bru-3 - chr3L 13722496 intron bru-3 - chr3L 13722597 intron bru-3 - chr3L_22_13720001 chr3L_13720001 RAL-361 1992 chr3L 13739988 13740015 chr3L 13740131 13740158 9 143 16.0 12.5 14.2 0.6 170 chr3L 13739988 intron bru-3 - chr3L 13740073 intron bru-3 - chr3L 13740158 intron bru-3 - chr3L_9_13740001 chr3L_13740001 RAL-361 1993 chr3L 13740016 13740048 chr3L 13740129 13740191 7 138 8.0 12.5 10.2 0.6 175 chr3L 13740016 intron bru-3 - chr3L 13740104 intron bru-3 - chr3L 13740191 intron bru-3 - chr3L_7_13740001 chr3L_13740001 RAL-361 1994 chr3L 13804502 13804568 chr3L 13822838 13822904 roo 27 18336 13.0 8.0 10.5 2.3 18402 chr3L 13804502 intergenic not near genes chr3L 13813703 intergenic not near genes chr3L 13822904 intergenic not near genes chr3L_27_13810001 chr3L_13810001 RAL-361 1995 chr3L 13884332 13884386 chr3L 13884473 13884527 19 141 11.5 7.0 9.2 1.9 195 chr3L 13884332 intron dysc - chr3L 13884430 intron dysc - chr3L 13884527 intron dysc - chr3L_19_13880001 chr3L_13880001 RAL-361 1996 chr3L 13901529 13901581 chr3L 13901656 13901708 13 125 11.0 4.0 7.5 1.5 179 chr3L 13901529 intron dysc - chr3L 13901618 intron dysc - chr3L 13901708 5` UTR dysc - chr3L_13_13900001 chr3L_13900001 RAL-361 1997 chr3L 13920371 13920423 chr3L 13920501 13920553 20 130 7.5 6.0 6.8 2.6 182 chr3L 13920371 intron Rgl - chr3L 13920462 intron Rgl - chr3L 13920553 intron Rgl - chr3L_20_13920001 chr3L_13920001 RAL-361 1998 chr3L 13931283 13931300 chr3L 13931438 13931449 6 154 19.0 1.5 10.2 0.5 166 chr3L 13931283 intron Gl + chr3L 13931366 intron Gl + chr3L 13931449 intron Gl + chr3L_6_13930001 chr3L_13930001 RAL-361 1999 chr3L 13931302 13931370 chr3L 13931437 13931525 16 150 4.5 1.0 2.8 4.2 223 chr3L 13931302 intron Gl + chr3L 13931414 intron Gl + chr3L 13931525 intron Gl + chr3L_16_13930001 chr3L_13930001 RAL-361 2000 chr3L 13954423 13954448 chr3L 13954552 13954577 6 129 9.5 16.5 13.0 0.4 154 chr3L 13954423 intron CG32137 + chr3L 13954500 intron CG32137 + chr3L 13954577 intron CG32137 + chr3L_6_13950001 chr3L_13950001 RAL-361 2001 chr3L 13993959 13994013 chr3L 13994089 13994144 12 130 4.5 4.5 4.5 2.2 185 chr3L 13993959 intergenic 26-29-p + chr3L 13994052 intergenic 26-29-p + chr3L 13994144 intergenic 26-29-p + chr3L_12_13990001 chr3L_13990001 RAL-361 2002 chr3L 14056734 14056744 chr3L 14056886 14056896 6 152 21.0 13.0 17.0 0.3 162 chr3L 14056734 intron CG32138 + chr3L 14056815 intron CG32138 + chr3L 14056896 intron CG32138 + chr3L_6_14055001 chr3L_14055001 RAL-361 2003 chr3L 14063008 14063079 chr3L 14063328 14063399 25 320 10.0 12.5 11.2 2.0 391 chr3L 14063008 intron CG32138 + chr3L 14063204 intron CG32138 + chr3L 14063399 intron CG32138 + chr3L_25_14060001 chr3L_14060001 RAL-361 2004 chr3L 14092689 14092744 chr3L 14092822 14092877 11 132 9.5 6.0 7.8 1.2 188 chr3L 14092689 intergenic not near genes chr3L 14092783 intergenic not near genes chr3L 14092877 intergenic not near genes chr3L_11_14090001 chr3L_14090001 RAL-361 2005 chr3L 14141362 14141368 chr3L 14141499 14141505 5 137 15.5 0.0 7.8 0.6 143 chr3L 14141362 intergenic not near genes chr3L 14141434 intergenic not near genes chr3L 14141505 intergenic not near genes chr3L_5_14140001 chr3L_14140001 RAL-361 2006 chr3L 14144091 14144147 chr3L 14144219 14144275 23 128 10.0 3.5 6.8 2.9 184 chr3L 14144091 intergenic not near genes chr3L 14144183 intergenic not near genes chr3L 14144275 intergenic not near genes chr3L_23_14140001 chr3L_14140001 RAL-361 2007 chr3L 14168295 14168314 chr3L 14168426 14168445 5 131 8.5 4.5 6.5 0.7 150 chr3L 14168295 intergenic not near genes chr3L 14168370 intergenic not near genes chr3L 14168445 intergenic not near genes chr3L_5_14165001 chr3L_14165001 RAL-361 2008 chr3L 14194681 14194731 chr3L 14194807 14194857 5 126 1.5 2.0 1.8 1.8 176 chr3L 14194681 intron nuf + chr3L 14194769 intron nuf + chr3L 14194857 intron nuf + chr3L_5_14190001 chr3L_14190001 RAL-361 2009 chr3L 14199132 14199201 chr3L 14199510 14199560 26 376 10.5 12.0 11.2 2.1 428 chr3L 14199132 intron nuf + chr3L 14199346 intron nuf + chr3L 14199560 intron nuf + chr3L_26_14195001 chr3L_14195001 RAL-361 2010 chr3L 14211404 14211461 chr3L 14211532 14211589 4 128 22.5 25.5 24.0 0.2 185 chr3L 14211404 intron nuf + chr3L 14211496 intron nuf + chr3L 14211589 intron nuf + chr3L_4_14210001 chr3L_14210001 RAL-361 2011 chr3L 14234798 14234851 chr3L 14234945 14234998 31 147 9.0 8.5 8.8 3.2 200 chr3L 14234798 intergenic CG7924 +,CG34244 - chr3L 14234898 intergenic CG34244 -,CG7924 + chr3L 14234998 intergenic CG34244 -,CG7924 + chr3L_31_14230001 chr3L_14230001 RAL-361 2012 chr3L 14236000 14236034 chr3L 14236187 14236221 17 187 17.5 9.5 13.5 1.2 221 chr3L 14236000 intergenic CG34244 - chr3L 14236110 intergenic CG34244 - chr3L 14236221 intergenic CG34244 -,CG7906 + chr3L_17_14235001 chr3L_14235001 RAL-361 2013 chr3L 14245532 14245594 chr3L 14245676 14245738 1360 32 144 10.5 12.5 11.5 2.6 206 chr3L 14245532 3` UTR CR44561 - chr3L 14245635 3` UTR CR44561 - chr3L 14245738 intergenic CR44561 -,CR44560 + chr3L_32_14245001 chr3L_14245001 RAL-361 2014 chr3L 14267320 14267389 chr3L 14271811 14271880 F-element 24 4487 10.0 8.5 9.2 2.4 4560 chr3L 14267320 intergenic not near genes chr3L 14269600 intergenic not near genes chr3L 14271880 intergenic not near genes chr3L_24_14265001 chr3L_14265001 RAL-361 2015 chr3L 14282537 14282604 chr3L 14282667 14282734 28 126 10.5 9.5 10.0 2.5 197 chr3L 14282537 intron fz + chr3L 14282636 intron fz + chr3L 14282734 intron fz + chr3L_28_14280001 chr3L_14280001 RAL-361 2016 chr3L 14295937 14296007 chr3L 14296473 14296538 roo 25 534 10.5 13.5 12.0 1.9 601 chr3L 14295937 intron fz + chr3L 14296238 intron fz + chr3L 14296538 intron fz + chr3L_25_14295001 chr3L_14295001 RAL-361 2017 chr3L 14302940 14303001 chr3L 14303075 14303102 20 123 7.5 9.5 8.5 2.1 162 chr3L 14302940 intron fz + chr3L 14303021 intron fz + chr3L 14303102 intron fz + chr3L_20_14300001 chr3L_14300001 RAL-361 2018 chr3L 14303482 14303500 chr3L 14303653 14303670 10 171 0.5 13.5 7.0 1.2 188 chr3L 14303482 intron fz + chr3L 14303576 intron fz + chr3L 14303670 intron fz + chr3L_10_14300001 chr3L_14300001 RAL-361 2019 chr3L 14311979 14312020 chr3L 14316843 14316864 X-element 9 4855 6.5 6.0 6.2 1.2 4885 chr3L 14311979 exon fz + chr3L 14314422 intron fz + chr3L 14316864 intron fz + chr3L_9_14310001 chr3L_14310001 RAL-361 2020 chr3L 14312023 14312043 chr3L 14316842 14316907 X-element 6 4856 4.5 6.0 5.2 1.0 4884 chr3L 14312023 exon fz + chr3L 14314465 intron fz + chr3L 14316907 intron fz + chr3L_6_14310001 chr3L_14310001 RAL-361 2021 chr3L 14331421 14331460 chr3L 14331553 14331593 7 132 20.0 26.5 23.2 0.3 172 chr3L 14331421 intron fz + chr3L 14331507 intron fz + chr3L 14331593 intron fz + chr3L_7_14330001 chr3L_14330001 RAL-361 2022 chr3L 14341397 14341439 chr3L 14341582 14341624 16 184 0.0 14.5 7.2 2.0 227 chr3L 14341397 intron fz + chr3L 14341510 intron fz + chr3L 14341624 intron fz + chr3L_16_14340001 chr3L_14340001 RAL-361 2023 chr3L 14356475 14356549 chr3L 14356605 14356679 28 128 13.5 9.0 11.2 2.3 204 chr3L 14356475 intron fz + chr3L 14356577 intron fz + chr3L 14356679 intron fz + chr3L_28_14355001 chr3L_14355001 RAL-361 2024 chr3L 14395601 14395664 chr3L 14395755 14395818 19 152 12.0 9.0 10.5 1.7 217 chr3L 14395601 intergenic not near genes chr3L 14395710 intergenic not near genes chr3L 14395818 intergenic not near genes chr3L_19_14395001 chr3L_14395001 RAL-361 2025 chr3L 14411826 14411871 chr3L 14411955 14412000 6 129 27.0 29.0 28.0 0.2 174 chr3L 14411826 intron CG3919 + chr3L 14411913 intron CG3919 + chr3L 14412000 intron CG3919 + chr3L_6_14410001 chr3L_14410001 RAL-361 2026 chr3L 14444678 14444748 chr3L 14444903 14444973 8 225 26.5 31.5 29.0 0.3 295 chr3L 14444678 intron bbg - chr3L 14444826 intron bbg - chr3L 14444973 intron bbg - chr3L_8_14440001 chr3L_14440001 RAL-361 2027 chr3L 14453654 14453718 chr3L 14453787 14453855 7 134 3.5 11.0 7.2 0.9 201 chr3L 14453654 intron bbg - chr3L 14453754 intron bbg - chr3L 14453855 intron bbg - chr3L_7_14450001 chr3L_14450001 RAL-361 2028 chr3L 14455190 14455367 chr3L 14455315 14455496 24 130 18.5 15.5 17.0 1.3 306 chr3L 14455190 intron bbg - chr3L 14455343 intron bbg - chr3L 14455496 intron bbg - chr3L_24_14455001 chr3L_14455001 RAL-361 2029 chr3L 14467078 14467146 chr3L 14467216 14467284 18 138 17.0 12.0 14.5 1.2 206 chr3L 14467078 intron bbg - chr3L 14467181 intron bbg - chr3L 14467284 intron bbg - chr3L_18_14465001 chr3L_14465001 RAL-361 2030 chr3L 14468410 14468463 chr3L 14473666 14473719 copia 21 5256 9.0 6.5 7.8 2.4 5309 chr3L 14468410 intron bbg - chr3L 14471064 intron bbg - chr3L 14473719 intron bbg - chr3L_21_14470001 chr3L_14470001 RAL-361 2031 chr3L 14473844 14473878 chr3L 14473971 14474005 9 126 16.0 10.0 13.0 0.6 161 chr3L 14473844 intron bbg - chr3L 14473924 intron bbg - chr3L 14474005 intron bbg - chr3L_9_14470001 chr3L_14470001 RAL-361 2032 chr3L 14485963 14486020 chr3L 14486242 14486318 7 295 21.5 22.5 22.0 0.3 355 chr3L 14485963 intron bbg - chr3L 14486140 intron bbg - chr3L 14486318 intron bbg - chr3L_7_14485001 chr3L_14485001 RAL-361 2033 chr3L 14522052 14522121 chr3L 14522201 14522270 36 149 12.5 9.0 10.8 3.1 218 chr3L 14522052 intron bbg - chr3L 14522161 intron bbg - chr3L 14522270 intron bbg - chr3L_36_14520001 chr3L_14520001 RAL-361 2034 chr3L 14524291 14524340 chr3L 14529096 14529147 F-element 4 4806 3.5 1.0 2.2 1.2 4856 chr3L 14524291 intron bbg - chr3L 14526719 intron bbg - chr3L 14529147 intron bbg - chr3L_4_14525001 chr3L_14525001 RAL-361 2035 chr3L 14572878 14572930 chr3L 14573011 14573063 10 133 15.5 24.5 20.0 0.5 185 chr3L 14572878 intergenic not near genes chr3L 14572970 intergenic not near genes chr3L 14573063 intergenic not near genes chr3L_10_14570001 chr3L_14570001 RAL-361 2036 chr3L 14585565 14585838 chr3L 14585693 14585966 7 121 5.0 13.5 9.2 0.7 401 chr3L 14585565 intron HGTX - chr3L 14585766 intron HGTX - chr3L 14585966 intron HGTX - chr3L_7_14585001 chr3L_14585001 RAL-361 2037 chr3L 14597310 14597382 chr3L 14597538 14597610 11 228 12.5 9.5 11.0 0.9 300 chr3L 14597310 intron HGTX - chr3L 14597460 intron HGTX - chr3L 14597610 intron HGTX - chr3L_11_14595001 chr3L_14595001 RAL-361 2038 chr3L 14602923 14603083 chr3L 14603061 14603210 12 143 5.5 3.5 4.5 2.2 287 chr3L 14602923 intergenic not near genes chr3L 14603066 intergenic not near genes chr3L 14603210 intergenic not near genes chr3L_12_14600001 chr3L_14600001 RAL-361 2039 chr3L 14605588 14605630 chr3L 14605740 14605775 7 151 5.5 12.0 8.8 0.7 187 chr3L 14605588 intergenic not near genes chr3L 14605682 intergenic not near genes chr3L 14605775 intergenic not near genes chr3L_7_14605001 chr3L_14605001 RAL-361 2040 chr3L 14611406 14611478 chr3L 14611553 14611625 16 147 10.5 7.5 9.0 1.6 219 chr3L 14611406 intergenic not near genes chr3L 14611516 intergenic not near genes chr3L 14611625 intergenic not near genes chr3L_16_14610001 chr3L_14610001 RAL-361 2041 chr3L 14633332 14633381 chr3L 14633489 14633538 12 157 22.0 15.5 18.8 0.6 206 chr3L 14633332 exon dlp + chr3L 14633435 intron dlp + chr3L 14633538 intron dlp + chr3L_12_14630001 chr3L_14630001 RAL-361 2042 chr3L 14706247 14706302 chr3L 14706373 14706418 7 123 14.0 8.0 11.0 0.6 171 chr3L 14706247 intron ome + chr3L 14706332 intron ome + chr3L 14706418 intron ome + chr3L_7_14705001 chr3L_14705001 RAL-361 2043 chr3L 14721147 14721208 chr3L 14723031 14723065 Rt1c 17 1888 6.5 9.5 8.0 1.9 1918 chr3L 14721147 intron ome + chr3L 14722106 intron ome + chr3L 14723065 intron ome + chr3L_17_14720001 chr3L_14720001 RAL-361 2044 chr3L 14725520 14725614 chr3L 14728583 14728637 Doc 27 3044 4.0 9.0 6.5 3.6 3117 chr3L 14725520 intron ome + chr3L 14727078 intron ome + chr3L 14728637 intron ome + chr3L_27_14725001 chr3L_14725001 RAL-361 2045 chr3L 14731272 14731348 chr3L 14731740 14731771 14 462 26.0 12.5 19.2 0.7 499 chr3L 14731272 intron ome + chr3L 14731522 intron ome + chr3L 14731771 intron ome + chr3L_14_14730001 chr3L_14730001 RAL-361 2046 chr3L 14740848 14741078 chr3L 14740987 14741215 19 138 20.5 19.5 20.0 0.9 367 chr3L 14740848 intron ome + chr3L 14741032 intron ome + chr3L 14741215 intron ome + chr3L_19_14740001 chr3L_14740001 RAL-361 2047 chr3L 14811092 14811153 chr3L 14811225 14811255 14 132 19.5 21.5 20.5 0.7 163 chr3L 14811092 intron CG17839 + chr3L 14811174 intron CG17839 + chr3L 14811255 intron CG17839 + chr3L_14_14810001 chr3L_14810001 RAL-361 2048 chr3L 14825133 14825152 chr3L 14832900 14832929 Stalker2 6 7775 5.0 13.5 9.2 0.6 7796 chr3L 14825133 intron CG17839 + chr3L 14829031 intron CG17839 + chr3L 14832929 intron CG17839 + chr3L_6_14825001 chr3L_14825001 RAL-361 2049 chr3L 14866777 14866824 chr3L 14866918 14866965 10 141 12.0 13.0 12.5 0.7 188 chr3L 14866777 exon CG17839 + chr3L 14866871 intron CG17839 + chr3L 14866965 intron CG17839 + chr3L_10_14865001 chr3L_14865001 RAL-361 2050 chr3L 14869777 14869831 chr3L 14869913 14869968 7 136 18.0 19.0 18.5 0.4 191 chr3L 14869777 intron CG17839 + chr3L 14869872 intron CG17839 + chr3L 14869968 intron CG17839 + chr3L_7_14865001 chr3L_14865001 RAL-361 2051 chr3L 14912142 14912200 chr3L 14912274 14912332 18 132 20.5 18.5 19.5 0.9 190 chr3L 14912142 intron DCX-EMAP + chr3L 14912237 intron DCX-EMAP + chr3L 14912332 intron DCX-EMAP + chr3L_18_14910001 chr3L_14910001 RAL-361 2052 chr3L 14913872 14914100 chr3L 14913999 14914296 26 175 18.5 20.0 19.2 1.3 424 chr3L 14913872 intron DCX-EMAP + chr3L 14914084 intron DCX-EMAP + chr3L 14914296 intron DCX-EMAP + chr3L_26_14910001 chr3L_14910001 RAL-361 2053 chr3L 14922063 14922133 chr3L 14922220 14922285 6 155 27.5 21.0 24.2 0.2 222 chr3L 14922063 intron DCX-EMAP + chr3L 14922174 intron DCX-EMAP + chr3L 14922285 intron DCX-EMAP + chr3L_6_14920001 chr3L_14920001 RAL-361 2054 chr3L 14923434 14923450 chr3L 14923561 14923577 5 127 9.0 14.5 11.8 0.4 143 chr3L 14923434 intron DCX-EMAP + chr3L 14923506 intron DCX-EMAP + chr3L 14923577 intron DCX-EMAP + chr3L_5_14920001 chr3L_14920001 RAL-361 2055 chr3L 14924899 14924964 chr3L 14925084 14925149 25 185 14.5 12.0 13.2 1.8 250 chr3L 14924899 intron DCX-EMAP + chr3L 14925024 intron DCX-EMAP + chr3L 14925149 intron DCX-EMAP + chr3L_25_14925001 chr3L_14925001 RAL-361 2056 chr3L 14933413 14933449 chr3L 14933545 14933581 7 132 23.0 26.5 24.8 0.3 168 chr3L 14933413 intron DCX-EMAP + chr3L 14933497 intron DCX-EMAP + chr3L 14933581 intron DCX-EMAP + chr3L_7_14930001 chr3L_14930001 RAL-361 2057 chr3L 14939172 14939237 chr3L 14939371 14939436 13 197 16.5 16.5 16.5 0.7 264 chr3L 14939172 intron DCX-EMAP + chr3L 14939304 intron DCX-EMAP + chr3L 14939436 exon DCX-EMAP + chr3L_13_14935001 chr3L_14935001 RAL-361 2058 chr3L 14954323 14954389 chr3L 14956042 14956094 transib2 15 1718 15.5 15.5 15.5 0.9 1771 chr3L 14954323 intergenic not near genes chr3L 14955208 intergenic not near genes chr3L 14956094 intergenic not near genes chr3L_15_14955001 chr3L_14955001 RAL-361 2059 chr3L 14957952 14957970 chr3L 14958084 14958102 4 132 5.0 1.0 3.0 1.0 150 chr3L 14957952 intergenic not near genes chr3L 14958027 intergenic not near genes chr3L 14958102 intergenic not near genes chr3L_4_14955001 chr3L_14955001 RAL-361 2060 chr3L 14959939 14960003 chr3L 14960073 14960137 8 134 26.0 21.5 23.8 0.3 198 chr3L 14959939 intergenic not near genes chr3L 14960038 intergenic not near genes chr3L 14960137 intergenic not near genes chr3L_8_14960001 chr3L_14960001 RAL-361 2061 chr3L 14970723 14970764 chr3L 14971084 14971124 F-element 16 361 10.5 6.5 8.5 1.7 401 chr3L 14970723 intergenic Tom + chr3L 14970924 intergenic not near genes chr3L 14971124 intergenic not near genes chr3L_16_14970001 chr3L_14970001 RAL-361 2062 chr3L 14995870 14995938 chr3L 14996021 14996089 17 149 23.5 24.5 24.0 0.7 219 chr3L 14995870 intron Zip71B + chr3L 14995980 intron Zip71B + chr3L 14996089 intron Zip71B + chr3L_17_14995001 chr3L_14995001 RAL-361 2063 chr3L 15053367 15053442 chr3L 15053756 15053831 12 387 18.0 19.5 18.8 0.6 464 chr3L 15053367 intron Sytbeta - chr3L 15053599 intron,3` UTR Sytbeta -,CG18649 - chr3L 15053831 intron,exon Sytbeta -,CG18649 - chr3L_12_15050001 chr3L_15050001 RAL-361 2064 chr3L 15084730 15084739 chr3L 15084856 15084869 9 128 10.0 12.0 11.0 0.8 139 chr3L 15084730 intron cp309 - chr3L 15084800 intron cp309 - chr3L 15084869 intron cp309 - chr3L_9_15080001 chr3L_15080001 RAL-361 2065 chr3L 15085006 15085080 chr3L 15086222 15086296 1360 32 1215 11.5 10.0 10.8 2.7 1290 chr3L 15085006 intron cp309 - chr3L 15085651 intron cp309 - chr3L 15086296 intron cp309 - chr3L_32_15085001 chr3L_15085001 RAL-361 2066 chr3L 15094927 15094963 chr3L 15095073 15095109 12 146 11.0 7.5 9.2 1.2 182 chr3L 15094927 intergenic cp309 -,CG6945 -,Aats-gly + chr3L 15095018 intergenic Aats-gly +,cp309 -,CG6945 - chr3L 15095109 intergenic Aats-gly +,cp309 -,CG6945 - chr3L_12_15095001 chr3L_15095001 RAL-361 2067 chr3L 15099230 15099292 chr3L 15099683 15099745 12 453 37.5 23.0 30.2 0.4 515 chr3L 15099230 intron,intron CTPsyn +,CR43973 - chr3L 15099488 intron,3` UTR CTPsyn +,CR43973 - chr3L 15099745 intron CTPsyn + chr3L_12_15095001 chr3L_15095001 RAL-361 2068 chr3L 15128733 15128761 chr3L 15128947 15128975 8 212 37.0 31.0 34.0 0.2 242 chr3L 15128733 exon CG13457 - chr3L 15128854 exon CG13457 - chr3L 15128975 exon CG13457 - chr3L_8_15125001 chr3L_15125001 RAL-361 2069 chr3L 15151169 15151236 chr3L 15151403 15151470 11 234 23.0 22.0 22.5 0.5 301 chr3L 15151169 intron FucTA + chr3L 15151320 intron FucTA + chr3L 15151470 exon FucTA + chr3L_11_15150001 chr3L_15150001 RAL-361 2070 chr3L 15164993 15165003 chr3L 15165141 15165151 4 148 21.5 24.0 22.8 0.2 158 chr3L 15164993 intergenic not near genes chr3L 15165072 intergenic not near genes chr3L 15165151 intergenic not near genes chr3L_4_15165001 chr3L_15165001 RAL-361 2071 chr3L 15169308 15169327 chr3L 15169435 15169454 8 126 22.0 6.5 14.2 0.5 146 chr3L 15169308 intergenic not near genes chr3L 15169381 intergenic not near genes chr3L 15169454 intergenic not near genes chr3L_8_15165001 chr3L_15165001 RAL-361 2072 chr3L 15203239 15203256 chr3L 15203399 15203416 6 160 22.0 26.5 24.2 0.2 177 chr3L 15203239 intergenic not near genes chr3L 15203328 intergenic not near genes chr3L 15203416 intergenic not near genes chr3L_6_15200001 chr3L_15200001 RAL-361 2073 chr3L 15219725 15219773 chr3L 15219857 15219905 13 132 3.0 7.0 5.0 2.2 180 chr3L 15219725 intergenic not near genes chr3L 15219815 intergenic not near genes chr3L 15219905 intergenic not near genes chr3L_13_15215001 chr3L_15215001 RAL-361 2074 chr3L 15233517 15233570 chr3L 15233648 15233701 15 131 24.5 21.0 22.8 0.6 184 chr3L 15233517 intergenic not near genes chr3L 15233609 intergenic not near genes chr3L 15233701 intergenic not near genes chr3L_15_15230001 chr3L_15230001 RAL-361 2075 chr3L 15257386 15257446 chr3L 15257649 15257709 24 262 5.0 5.0 5.0 4.0 323 chr3L 15257386 intergenic not near genes chr3L 15257548 intergenic not near genes chr3L 15257709 intergenic not near genes chr3L_24_15255001 chr3L_15255001 RAL-361 2076 chr3L 15267896 15267905 chr3L 15268030 15268039 4 134 16.0 15.5 15.8 0.2 143 chr3L 15267896 intergenic not near genes chr3L 15267968 intergenic not near genes chr3L 15268039 intergenic not near genes chr3L_4_15265001 chr3L_15265001 RAL-361 2077 chr3L 15273290 15273361 chr3L 15273486 15273557 16 196 21.5 28.5 25.0 0.6 267 chr3L 15273290 intergenic not near genes chr3L 15273424 intergenic not near genes chr3L 15273557 intergenic not near genes chr3L_16_15270001 chr3L_15270001 RAL-361 2078 chr3L 15295731 15295790 chr3L 15298624 15298683 gypsy5 26 2893 10.5 9.5 10.0 2.4 2952 chr3L 15295731 intergenic not near genes chr3L 15297207 intergenic not near genes chr3L 15298683 intergenic Best4 + chr3L_26_15295001 chr3L_15295001 RAL-361 2079 chr3L 15333093 15333166 chr3L 15333225 15333298 10 130 15.0 15.5 15.2 0.6 205 chr3L 15333093 intergenic CR43247 + chr3L 15333196 intergenic CR43247 + chr3L 15333298 intergenic CR43247 + chr3L_10_15330001 chr3L_15330001 RAL-361 2080 chr3L 15348065 15348139 chr3L 15348273 15348322 14 205 21.0 31.5 26.2 0.5 257 chr3L 15348065 intergenic not near genes chr3L 15348194 intergenic not near genes chr3L 15348322 intergenic not near genes chr3L_14_15345001 chr3L_15345001 RAL-361 2081 chr3L 15358325 15358378 chr3L 15358506 15358559 14 181 14.0 15.0 14.5 0.9 234 chr3L 15358325 intergenic not near genes chr3L 15358442 intergenic not near genes chr3L 15358559 intergenic not near genes chr3L_14_15355001 chr3L_15355001 RAL-361 2082 chr3L 15398276 15398347 chr3L 15398418 15398500 10 150 22.0 19.5 20.8 0.5 224 chr3L 15398276 intergenic not near genes chr3L 15398388 intergenic not near genes chr3L 15398500 intergenic not near genes chr3L_10_15395001 chr3L_15395001 RAL-361 2083 chr3L 15399672 15399737 chr3L 15399943 15400008 6 271 24.0 18.0 21.0 0.3 336 chr3L 15399672 intergenic not near genes chr3L 15399840 intergenic not near genes chr3L 15400008 intergenic not near genes chr3L_6_15395001 chr3L_15395001 RAL-361 2084 chr3L 15405975 15405983 chr3L 15406107 15406115 5 132 19.0 10.5 14.8 0.3 140 chr3L 15405975 intergenic not near genes chr3L 15406045 intergenic not near genes chr3L 15406115 intergenic not near genes chr3L_5_15405001 chr3L_15405001 RAL-361 2085 chr3L 15405984 15406050 chr3L 15406106 15406177 18 131 8.5 10.5 9.5 1.7 193 chr3L 15405984 intergenic not near genes chr3L 15406080 intergenic not near genes chr3L 15406177 intergenic not near genes chr3L_18_15405001 chr3L_15405001 RAL-361 2086 chr3L 15415312 15415379 chr3L 15415445 15415512 11 133 37.5 32.5 35.0 0.3 200 chr3L 15415312 intergenic not near genes chr3L 15415412 intergenic not near genes chr3L 15415512 intergenic not near genes chr3L_11_15415001 chr3L_15415001 RAL-361 2087 chr3L 15423717 15423782 chr3L 15426611 15426676 opus 34 2894 9.0 10.0 9.5 3.2 2959 chr3L 15423717 intergenic not near genes chr3L 15425196 intergenic not near genes chr3L 15426676 intergenic not near genes chr3L_34_15425001 chr3L_15425001 RAL-361 2088 chr3L 15431655 15431697 chr3L 15431777 15431834 7 135 22.0 23.0 22.5 0.3 179 chr3L 15431655 intergenic not near genes chr3L 15431744 intergenic not near genes chr3L 15431834 intergenic not near genes chr3L_7_15430001 chr3L_15430001 RAL-361 2089 chr3L 15443536 15443611 chr3L 15443662 15443738 11 126 22.5 23.5 23.0 0.5 202 chr3L 15443536 intergenic not near genes chr3L 15443637 intergenic not near genes chr3L 15443738 intergenic not near genes chr3L_11_15440001 chr3L_15440001 RAL-361 2090 chr3L 15465990 15466132 chr3L 15466122 15466278 12 143 23.0 23.5 23.2 0.5 288 chr3L 15465990 intergenic not near genes chr3L 15466134 intergenic not near genes chr3L 15466278 intergenic not near genes chr3L_12_15465001 chr3L_15465001 RAL-361 2091 chr3L 15474461 15474669 chr3L 15474590 15474858 6 179 11.0 9.5 10.2 0.5 397 chr3L 15474461 intergenic CG7804 - chr3L 15474660 intergenic not near genes chr3L 15474858 intergenic not near genes chr3L_6_15470001 chr3L_15470001 RAL-361 2092 chr3L 15482554 15482622 chr3L 15482685 15482753 15 131 19.5 21.0 20.2 0.7 199 chr3L 15482554 intergenic not near genes chr3L 15482654 intergenic not near genes chr3L 15482753 intergenic not near genes chr3L_15_15480001 chr3L_15480001 RAL-361 2093 chr3L 15493264 15493347 chr3L 15493409 15493482 8 144 13.5 5.5 9.5 0.8 218 chr3L 15493264 exon CG12355 - chr3L 15493373 intron CG12355 - chr3L 15493482 5` UTR CG12355 - chr3L_8_15490001 chr3L_15490001 RAL-361 2094 chr3L 15506435 15506448 chr3L 15506566 15506579 5 131 33.0 26.0 29.5 0.2 144 chr3L 15506435 intron CG7841 - chr3L 15506507 intron CG7841 - chr3L 15506579 intron CG7841 - chr3L_5_15505001 chr3L_15505001 RAL-361 2095 chr3L 15506450 15506501 chr3L 15506565 15506632 10 127 26.5 25.0 25.8 0.4 182 chr3L 15506450 intron CG7841 - chr3L 15506541 intron CG7841 - chr3L 15506632 intron CG7841 - chr3L_10_15505001 chr3L_15505001 RAL-361 2096 chr3L 15533118 15533151 chr3L 15533249 15533283 8 131 18.5 31.5 25.0 0.3 165 chr3L 15533118 intergenic not near genes chr3L 15533200 intergenic not near genes chr3L 15533283 intergenic not near genes chr3L_8_15530001 chr3L_15530001 RAL-361 2097 chr3L 15541581 15541651 chr3L 15541722 15541790 12 140 27.0 26.5 26.8 0.4 209 chr3L 15541581 intron CrebA + chr3L 15541686 intron CrebA + chr3L 15541790 intron CrebA + chr3L_12_15540001 chr3L_15540001 RAL-361 2098 chr3L 15541909 15541968 chr3L 15542053 15542112 9 144 18.0 19.0 18.5 0.5 203 chr3L 15541909 intron CrebA + chr3L 15542010 intron CrebA + chr3L 15542112 intron CrebA + chr3L_9_15540001 chr3L_15540001 RAL-361 2099 chr3L 15598857 15598914 chr3L 15598988 15599045 9 131 21.0 26.0 23.5 0.4 188 chr3L 15598857 intron RhoGAP71E + chr3L 15598951 intron RhoGAP71E + chr3L 15599045 intron RhoGAP71E + chr3L_9_15595001 chr3L_15595001 RAL-361 2100 chr3L 15600149 15600192 chr3L 15600300 15600343 18 148 11.5 6.5 9.0 1.8 194 chr3L 15600149 intron RhoGAP71E + chr3L 15600246 intron RhoGAP71E + chr3L 15600343 intron RhoGAP71E + chr3L_18_15600001 chr3L_15600001 RAL-361 2101 chr3L 15618316 15618370 chr3L 15618699 15618763 12 400 20.0 24.5 22.2 0.5 447 chr3L 15618316 intron comm3 - chr3L 15618540 intron comm3 - chr3L 15618763 intron comm3 - chr3L_12_15615001 chr3L_15615001 RAL-361 2102 chr3L 15633131 15633205 chr3L 15633261 15633335 8 130 21.5 17.5 19.5 0.4 204 chr3L 15633131 intron comm3 - chr3L 15633233 intron comm3 - chr3L 15633335 intron comm3 - chr3L_8_15630001 chr3L_15630001 RAL-361 2103 chr3L 15641733 15641811 chr3L 15641868 15641946 17 135 0.0 3.0 1.5 6.8 213 chr3L 15641733 intron comm3 - chr3L 15641840 intron comm3 - chr3L 15641946 intron comm3 - chr3L_17_15640001 chr3L_15640001 RAL-361 2104 chr3L 15643548 15643609 chr3L 15643885 15643946 13 337 12.5 13.0 12.8 0.9 398 chr3L 15643548 intron comm3 - chr3L 15643747 intron comm3 - chr3L 15643946 intron comm3 - chr3L_13_15640001 chr3L_15640001 RAL-361 2105 chr3L 15676074 15676121 chr3L 15676204 15676251 7 130 26.5 20.0 23.2 0.3 177 chr3L 15676074 intergenic not near genes chr3L 15676162 intergenic not near genes chr3L 15676251 intergenic not near genes chr3L_7_15675001 chr3L_15675001 RAL-361 2106 chr3L 15679132 15679203 chr3L 15679514 15679585 11 379 20.0 10.0 15.0 0.7 453 chr3L 15679132 intergenic not near genes chr3L 15679358 intergenic CG7304 + chr3L 15679585 intergenic CG7304 + chr3L_11_15675001 chr3L_15675001 RAL-361 2107 chr3L 15695942 15695998 chr3L 15696070 15696126 16 126 22.5 24.0 23.2 0.7 184 chr3L 15695942 intergenic not near genes chr3L 15696034 intergenic not near genes chr3L 15696126 intergenic not near genes chr3L_16_15695001 chr3L_15695001 RAL-361 2108 chr3L 15737332 15737388 chr3L 15737472 15737528 8 140 32.0 29.5 30.8 0.3 196 chr3L 15737332 intergenic not near genes chr3L 15737430 intergenic not near genes chr3L 15737528 intergenic not near genes chr3L_8_15735001 chr3L_15735001 RAL-361 2109 chr3L 15744585 15744607 chr3L 15745009 15745031 9 426 40.0 54.5 47.2 0.2 446 chr3L 15744585 intergenic not near genes chr3L 15744808 intergenic not near genes chr3L 15745031 intergenic not near genes chr3L_9_15740001 chr3L_15740001 RAL-361 2110 chr3L 15744581 15744613 chr3L 15745032 15745037 5 430 42.0 46.0 44.0 0.1 456 chr3L 15744581 intergenic not near genes chr3L 15744809 intergenic not near genes chr3L 15745037 intergenic not near genes chr3L_5_15740001 chr3L_15740001 RAL-361 2111 chr3L 15744580 15744648 chr3L 15745038 15745072 13 427 52.0 44.5 48.2 0.3 492 chr3L 15744580 intergenic not near genes chr3L 15744826 intergenic not near genes chr3L 15745072 intergenic not near genes chr3L_13_15740001 chr3L_15740001 RAL-361 2112 chr3L 15746584 15746594 chr3L 15746721 15746737 4 142 20.5 24.5 22.5 0.2 153 chr3L 15746584 intergenic not near genes chr3L 15746660 intergenic not near genes chr3L 15746737 intergenic not near genes chr3L_4_15745001 chr3L_15745001 RAL-361 2113 chr3L 15756822 15756864 chr3L 15756964 15756974 11 135 28.0 17.0 22.5 0.5 152 chr3L 15756822 intergenic not near genes chr3L 15756898 intergenic not near genes chr3L 15756974 intergenic not near genes chr3L_11_15755001 chr3L_15755001 RAL-361 2114 chr3L 15774852 15774878 chr3L 15774992 15775013 8 139 22.0 17.0 19.5 0.4 161 chr3L 15774852 intergenic not near genes chr3L 15774932 intergenic not near genes chr3L 15775013 intergenic not near genes chr3L_8_15770001 chr3L_15770001 RAL-361 2115 chr3L 15778541 15778599 chr3L 15778673 15778731 12 132 24.5 27.0 25.8 0.4 190 chr3L 15778541 intergenic not near genes chr3L 15778636 intergenic not near genes chr3L 15778731 intergenic not near genes chr3L_12_15775001 chr3L_15775001 RAL-361 2116 chr3L 15781606 15781687 chr3L 15781787 15781886 6 195 6.0 0.0 3.0 1.5 280 chr3L 15781606 intergenic not near genes chr3L 15781746 intergenic not near genes chr3L 15781886 intergenic not near genes chr3L_6_15780001 chr3L_15780001 RAL-361 2117 chr3L 15825692 15825705 chr3L 15825823 15825836 4 131 33.0 37.5 35.2 0.1 144 chr3L 15825692 5` UTR Dcp2 - chr3L 15825764 5` UTR Dcp2 - chr3L 15825836 5` UTR Dcp2 - chr3L_4_15825001 chr3L_15825001 RAL-361 2118 chr3L 15836195 15836258 chr3L 15836331 15836394 17 133 22.5 29.5 26.0 0.6 199 chr3L 15836195 exon CG15715 - chr3L 15836294 intron CG15715 - chr3L 15836394 intron CG15715 - chr3L_17_15835001 chr3L_15835001 RAL-361 2119 chr3L 15840383 15840466 chr3L 15840521 15840589 11 136 2.5 4.0 3.2 2.6 206 chr3L 15840383 intron CG32150 - chr3L 15840486 intron CG32150 - chr3L 15840589 intron CG32150 - chr3L_11_15840001 chr3L_15840001 RAL-361 2120 chr3L 15880562 15880614 chr3L 15880672 15880744 11 121 15.0 10.5 12.8 0.8 182 chr3L 15880562 intron pHCl - chr3L 15880653 intron pHCl - chr3L 15880744 intron pHCl - chr3L_11_15880001 chr3L_15880001 RAL-361 2121 chr3L 15883143 15883218 chr3L 15883486 15883561 33 341 6.5 7.0 6.8 4.2 418 chr3L 15883143 intron pHCl - chr3L 15883352 intron pHCl - chr3L 15883561 intron pHCl - chr3L_33_15880001 chr3L_15880001 RAL-361 2122 chr3L 15899215 15899217 chr3L 15899797 15899834 jockey 6 603 13.5 12.0 12.8 0.4 619 chr3L 15899215 intergenic pHCl - chr3L 15899524 intergenic pHCl - chr3L 15899834 intergenic sff - chr3L_6_15895001 chr3L_15895001 RAL-361 2123 chr3L 15899221 15899258 chr3L 15899793 15899832 jockey 11 607 8.0 10.0 9.0 1.1 611 chr3L 15899221 intergenic pHCl - chr3L 15899526 intergenic pHCl - chr3L 15899832 intergenic sff - chr3L_11_15895001 chr3L_15895001 RAL-361 2124 chr3L 15916799 15916864 chr3L 15916926 15916991 8 120 13.0 13.5 13.2 0.6 192 chr3L 15916799 intron sff - chr3L 15916895 intron sff - chr3L 15916991 intron sff - chr3L_8_15915001 chr3L_15915001 RAL-361 2125 chr3L 15929149 15929229 chr3L 15938342 15938426 roo 13 9195 0.0 6.5 3.2 3.1 9277 chr3L 15929149 intron Pka-C3 - chr3L 15933788 intron Pka-C3 - chr3L 15938426 intron Pka-C3 - chr3L_13_15930001 chr3L_15930001 RAL-361 2126 chr3L 15939823 15939861 chr3L 15939949 15939970 4 122 25.0 23.0 24.0 0.2 147 chr3L 15939823 intron Pka-C3 - chr3L 15939896 intron Pka-C3 - chr3L 15939970 intron Pka-C3 - chr3L_4_15935001 chr3L_15935001 RAL-361 2127 chr3L 15946460 15946536 chr3L 15946596 15946672 22 136 10.0 0.0 5.0 3.7 212 chr3L 15946460 intron Pka-C3 - chr3L 15946566 intron Pka-C3 - chr3L 15946672 intron Pka-C3 - chr3L_22_15945001 chr3L_15945001 RAL-361 2128 chr3L 15948705 15948763 chr3L 15948838 15948896 7 131 21.0 24.5 22.8 0.3 191 chr3L 15948705 intron Pka-C3 - chr3L 15948800 intron Pka-C3 - chr3L 15948896 intron Pka-C3 - chr3L_7_15945001 chr3L_15945001 RAL-361 2129 chr3L 15989184 15989265 chr3L 15989324 15989388 16 137 17.5 18.0 17.8 0.9 204 chr3L 15989184 exon Hip14 + chr3L 15989286 intron Hip14 + chr3L 15989388 exon Hip14 + chr3L_16_15985001 chr3L_15985001 RAL-361 2130 chr3L 16032112 16032146 chr3L 16032252 16032286 5 140 25.5 25.5 25.5 0.2 174 chr3L 16032112 3` UTR Notum + chr3L 16032199 3` UTR Notum + chr3L 16032286 3` UTR Notum + chr3L_5_16030001 chr3L_16030001 RAL-361 2131 chr3L 16047740 16047762 chr3L 16047869 16047891 7 129 12.5 22.5 17.5 0.4 151 chr3L 16047740 intron th - chr3L 16047816 intron th - chr3L 16047891 intron th - chr3L_7_16045001 chr3L_16045001 RAL-361 2132 chr3L 16154634 16154707 chr3L 16154775 16154830 22 138 22.0 26.0 24.0 0.9 196 chr3L 16154634 intron CG5151 - chr3L 16154732 intron CG5151 - chr3L 16154830 intron CG5151 - chr3L_22_16150001 chr3L_16150001 RAL-361 2133 chr3L 16162587 16162630 chr3L 16162713 16162734 8 129 5.0 5.0 5.0 1.3 147 chr3L 16162587 intron CG5151 - chr3L 16162660 intron CG5151 - chr3L 16162734 intron CG5151 - chr3L_8_16160001 chr3L_16160001 RAL-361 2134 chr3L 16183094 16183119 chr3L 16183233 16183258 4 139 3.0 0.0 1.5 1.6 164 chr3L 16183094 intergenic not near genes chr3L 16183176 intergenic not near genes chr3L 16183258 intergenic not near genes chr3L_4_16180001 chr3L_16180001 RAL-361 2135 chr3L 16184073 16184129 chr3L 16188942 16188997 X-element 25 4868 11.0 10.5 10.8 2.1 4924 chr3L 16184073 intergenic not near genes chr3L 16186535 intergenic not near genes chr3L 16188997 intergenic not near genes chr3L_25_16185001 chr3L_16185001 RAL-361 2136 chr3L 16194289 16194362 chr3L 16194429 16194476 12 132 12.5 11.0 11.8 0.9 187 chr3L 16194289 intergenic not near genes chr3L 16194382 intergenic not near genes chr3L 16194476 intergenic not near genes chr3L_12_16190001 chr3L_16190001 RAL-361 2137 chr3L 16212770 16212835 chr3L 16212911 16212979 23 141 8.5 0.0 4.2 4.4 209 chr3L 16212770 intergenic CG13073 - chr3L 16212874 intergenic CG13073 - chr3L 16212979 intergenic CG13073 - chr3L_23_16210001 chr3L_16210001 RAL-361 2138 chr3L 16223764 16223823 chr3L 16223901 16223960 16 136 24.0 27.5 25.8 0.6 196 chr3L 16223764 intergenic not near genes chr3L 16223862 intergenic not near genes chr3L 16223960 intergenic not near genes chr3L_16_16220001 chr3L_16220001 RAL-361 2139 chr3L 16236296 16236367 chr3L 16236460 16236532 28 163 6.5 6.0 6.2 3.9 236 chr3L 16236296 3` UTR l(3)72Dp + chr3L 16236414 3` UTR l(3)72Dp + chr3L 16236532 3` UTR l(3)72Dp + chr3L_28_16235001 chr3L_16235001 RAL-361 2140 chr3L 16240707 16240779 chr3L 16240889 16240961 8 182 0.0 8.5 4.2 1.5 254 chr3L 16240707 intergenic not near genes chr3L 16240834 intergenic not near genes chr3L 16240961 intergenic not near genes chr3L_8_16240001 chr3L_16240001 RAL-361 2141 chr3L 16275777 16275819 chr3L 16275923 16275965 7 145 9.5 0.0 4.8 1.2 188 chr3L 16275777 intergenic not near genes chr3L 16275871 intergenic not near genes chr3L 16275965 intergenic not near genes chr3L_7_16275001 chr3L_16275001 RAL-361 2142 chr3L 16301231 16301290 chr3L 16301357 16301397 20 131 4.0 9.5 6.8 2.6 166 chr3L 16301231 intergenic CG4982 + chr3L 16301314 intergenic CG4982 + chr3L 16301397 intergenic CG4982 + chr3L_20_16300001 chr3L_16300001 RAL-361 2143 chr3L 16345534 16345551 chr3L 16345715 16345732 10 181 0.0 11.5 5.8 1.5 198 chr3L 16345534 intergenic CG4998 + chr3L 16345633 intergenic CG4998 + chr3L 16345732 intergenic CG4998 + chr3L_10_16345001 chr3L_16345001 RAL-361 2144 chr3L 16359905 16359932 chr3L 16360225 16360237 13 319 9.5 2.5 6.0 1.9 332 chr3L 16359905 intron CG45057 - chr3L 16360071 intron CG45057 - chr3L 16360237 intron CG45057 - chr3L_13_16360001 chr3L_16360001 RAL-361 2145 chr3L 16431784 16431858 chr3L 16431928 16432003 39 143 6.5 10.5 8.5 4.1 219 chr3L 16431784 intron,intron CG33158 +,dsx-c73A - chr3L 16431894 intron,intron CG33158 +,dsx-c73A - chr3L 16432003 intron,intron CG33158 +,dsx-c73A - chr3L_39_16430001 chr3L_16430001 RAL-361 2146 chr3L 16443798 16443877 chr3L 16446188 16446267 Doc 24 2389 5.5 6.5 6.0 3.4 2469 chr3L 16443798 intron,intron CG33158 +,dsx-c73A - chr3L 16445032 intron,intron CG33158 +,dsx-c73A - chr3L 16446267 intron,intron CG33158 +,dsx-c73A - chr3L_24_16445001 chr3L_16445001 RAL-361 2147 chr3L 16452987 16453017 chr3L 16453114 16453144 11 127 8.5 0.0 4.2 2.1 157 chr3L 16452987 intron CG33158 + chr3L 16453066 intron CG33158 + chr3L 16453144 intron CG33158 + chr3L_11_16450001 chr3L_16450001 RAL-361 2148 chr3L 16457477 16457543 chr3L 16457623 16457688 22 145 6.0 7.0 6.5 2.9 211 chr3L 16457477 intron CG33158 + chr3L 16457582 intron CG33158 + chr3L 16457688 intron CG33158 + chr3L_22_16455001 chr3L_16455001 RAL-361 2149 chr3L 16462687 16462750 chr3L 16462831 16462894 25 141 3.5 10.0 6.8 3.2 207 chr3L 16462687 intron CG33158 + chr3L 16462790 intron CG33158 + chr3L 16462894 intron CG33158 + chr3L_25_16460001 chr3L_16460001 RAL-361 2150 chr3L 16493957 16494003 chr3L 16494503 16494569 jockey 12 564 6.0 10.0 8.0 1.3 612 chr3L 16493957 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494263 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494569 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_12_16490001 chr3L_16490001 RAL-361 2151 chr3L 16503508 16503541 chr3L 16503798 16503831 15 288 9.5 11.5 10.5 1.3 323 chr3L 16503508 intron CG43373 - chr3L 16503670 intron CG43373 - chr3L 16503831 intron CG43373 - chr3L_15_16500001 chr3L_16500001 RAL-361 2152 chr3L 16503542 16503582 chr3L 16503790 16503827 20 284 4.5 9.5 7.0 2.5 285 chr3L 16503542 intron CG43373 - chr3L 16503684 intron CG43373 - chr3L 16503827 intron CG43373 - chr3L_20_16500001 chr3L_16500001 RAL-361 2153 chr3L 16506110 16506141 chr3L 16506305 16506336 14 195 0.0 6.5 3.2 3.3 226 chr3L 16506110 intron CG43373 - chr3L 16506223 intron CG43373 - chr3L 16506336 intron CG43373 - chr3L_14_16505001 chr3L_16505001 RAL-361 2154 chr3L 16533515 16533575 chr3L 16533676 16533736 15 161 0.0 5.0 2.5 4.3 221 chr3L 16533515 intron CG43373 - chr3L 16533626 intron CG43373 - chr3L 16533736 intron CG43373 - chr3L_15_16530001 chr3L_16530001 RAL-361 2155 chr3L 16537821 16537880 chr3L 16537958 16537987 35 136 9.5 18.5 14.0 2.3 166 chr3L 16537821 intron CG43373 - chr3L 16537904 intron CG43373 - chr3L 16537987 intron CG43373 - chr3L_35_16535001 chr3L_16535001 RAL-361 2156 chr3L 16540012 16540078 chr3L 16540150 16540181 14 136 4.0 7.5 5.8 2.1 169 chr3L 16540012 intron CG43373 - chr3L 16540096 intron CG43373 - chr3L 16540181 intron CG43373 - chr3L_14_16540001 chr3L_16540001 RAL-361 2157 chr3L 16610639 16610650 chr3L 16610774 16610785 8 135 23.5 11.5 17.5 0.4 146 chr3L 16610639 intergenic Su(P) -,Prosbeta6 - chr3L 16610712 3` UTR Su(P) - chr3L 16610785 exon Su(P) - chr3L_8_16610001 chr3L_16610001 RAL-361 2158 chr3L 16610651 16610713 chr3L 16610770 16610848 33 134 9.5 11.5 10.5 2.9 197 chr3L 16610651 intergenic Su(P) -,Prosbeta6 - chr3L 16610750 exon Su(P) - chr3L 16610848 intron Su(P) - chr3L_33_16610001 chr3L_16610001 RAL-361 2159 chr3L 16616469 16616474 chr3L 16621847 16621851 297 6 5378 17.5 10.0 13.8 0.4 5382 chr3L 16616469 3` UTR Abl - chr3L 16619160 3` UTR Abl - chr3L 16621851 3` UTR Abl - chr3L_6_16615001 chr3L_16615001 RAL-361 2160 chr3L 16616488 16616530 chr3L 16621836 16621908 297 13 5375 7.0 6.5 6.8 1.7 5420 chr3L 16616488 3` UTR Abl - chr3L 16619198 3` UTR Abl - chr3L 16621908 3` UTR Abl - chr3L_13_16615001 chr3L_16615001 RAL-361 2161 chr3L 16632169 16632260 chr3L 16632413 16632492 23 235 3.5 3.0 3.2 5.5 323 chr3L 16632169 intron Abl - chr3L 16632330 intron Abl - chr3L 16632492 intron Abl - chr3L_23_16630001 chr3L_16630001 RAL-361 2162 chr3L 16683979 16684036 chr3L 16689250 16689307 copia 27 5271 11.5 13.0 12.2 2.0 5328 chr3L 16683979 intron,intron Lasp -,CG43954 - chr3L 16686643 intron,intron Lasp -,CG43954 - chr3L 16689307 intron,intron,5` UTR Lasp -,CG43954 -,CR45179 + chr3L_27_16685001 chr3L_16685001 RAL-361 2163 chr3L 16714807 16714868 chr3L 16714941 16715002 23 134 5.5 8.5 7.0 2.9 195 chr3L 16714807 intron Dab + chr3L 16714904 intron Dab + chr3L 16715002 intron Dab + chr3L_23_16710001 chr3L_16710001 RAL-361 2164 chr3L 16757601 16757664 chr3L 16757735 16757804 24 140 7.0 6.5 6.8 3.1 203 chr3L 16757601 intergenic not near genes chr3L 16757702 intergenic not near genes chr3L 16757804 intergenic not near genes chr3L_24_16755001 chr3L_16755001 RAL-361 2165 chr3L 16764549 16764603 chr3L 16764706 16764760 11 154 6.0 8.0 7.0 1.4 211 chr3L 16764549 intergenic not near genes chr3L 16764654 intergenic not near genes chr3L 16764760 intergenic not near genes chr3L_11_16760001 chr3L_16760001 RAL-361 2166 chr3L 16772450 16772495 chr3L 16772590 16772619 9 135 25.5 22.0 23.8 0.4 169 chr3L 16772450 intron Nrt + chr3L 16772534 intron Nrt + chr3L 16772619 intron Nrt + chr3L_9_16770001 chr3L_16770001 RAL-361 2167 chr3L 16786980 16786994 chr3L 16787091 16787120 5 123 4.0 17.0 10.5 0.4 140 chr3L 16786980 intergenic Int6 - chr3L 16787050 intergenic Int6 - chr3L 16787120 intergenic Int6 -,CG9674 - chr3L_5_16785001 chr3L_16785001 RAL-361 2168 chr3L 16804970 16805039 chr3L 16805135 16805204 30 164 15.5 17.5 16.5 1.7 234 chr3L 16804970 intron CG9674 - chr3L 16805087 intron,5` UTR CG9674 -,nudC + chr3L 16805204 intron,5` UTR CG9674 -,nudC + chr3L_30_16805001 chr3L_16805001 RAL-361 2169 chr3L 16807997 16808074 chr3L 16808123 16808203 26 128 6.0 4.5 5.2 4.2 206 chr3L 16807997 intron nudC + chr3L 16808100 intron nudC + chr3L 16808203 intron nudC + chr3L_26_16805001 chr3L_16805001 RAL-361 2170 chr3L 16817836 16817853 chr3L 16818026 16818043 6 190 23.0 24.5 23.8 0.2 207 chr3L 16817836 intron,intron nudC +,CG13024 - chr3L 16817940 intron,intron nudC +,CG13024 - chr3L 16818043 intron,intron nudC +,CG13024 - chr3L_6_16815001 chr3L_16815001 RAL-361 2171 chr3L 16817854 16817898 chr3L 16818023 16818088 18 189 20.5 24.0 22.2 0.8 234 chr3L 16817854 intron,intron nudC +,CG13024 - chr3L 16817971 intron,intron nudC +,CG13024 - chr3L 16818088 intron,intron nudC +,CG13024 - chr3L_18_16815001 chr3L_16815001 RAL-361 2172 chr3L 16818705 16818778 chr3L 16818831 16818904 12 126 35.5 40.0 37.8 0.3 199 chr3L 16818705 intron,intron nudC +,CG13024 - chr3L 16818804 intron,intron nudC +,CG13024 - chr3L 16818904 intron,intron nudC +,CG13024 - chr3L_12_16815001 chr3L_16815001 RAL-361 2173 chr3L 16830729 16830740 chr3L 16830862 16830873 6 133 27.0 14.0 20.5 0.3 144 chr3L 16830729 intergenic not near genes chr3L 16830801 intergenic not near genes chr3L 16830873 intergenic not near genes chr3L_6_16830001 chr3L_16830001 RAL-361 2174 chr3L 16830741 16830787 chr3L 16830859 16830920 19 131 18.0 13.0 15.5 1.2 179 chr3L 16830741 intergenic not near genes chr3L 16830830 intergenic not near genes chr3L 16830920 intergenic not near genes chr3L_19_16830001 chr3L_16830001 RAL-361 2175 chr3L 16844974 16845040 chr3L 16845137 16845203 19 163 7.0 5.5 6.2 2.6 229 chr3L 16844974 5` UTR CG9669 - chr3L 16845088 intergenic CG9669 -,CG9715 + chr3L 16845203 intergenic CG9715 +,CG9669 - chr3L_19_16845001 chr3L_16845001 RAL-361 2176 chr3L 16860978 16861052 chr3L 16861130 16861204 16 151 16.0 21.0 18.5 0.8 226 chr3L 16860978 intron,exon Rh4 -,CG13029 + chr3L 16861091 intron,intron Rh4 -,CG13029 + chr3L 16861204 intron,exon Rh4 -,CG13029 + chr3L_16_16860001 chr3L_16860001 RAL-361 2177 chr3L 16869539 16869603 chr3L 16869671 16869736 11 132 29.5 29.5 29.5 0.4 197 chr3L 16869539 intron Lmpt + chr3L 16869638 intron Lmpt + chr3L 16869736 intron Lmpt + chr3L_11_16865001 chr3L_16865001 RAL-361 2178 chr3L 16882271 16882307 chr3L 16882408 16882439 8 132 9.5 13.0 11.2 0.7 168 chr3L 16882271 intron Lmpt + chr3L 16882355 intron Lmpt + chr3L 16882439 intron Lmpt + chr3L_8_16880001 chr3L_16880001 RAL-361 2179 chr3L 16886294 16886322 chr3L 16886445 16886473 4 151 29.0 27.0 28.0 0.1 179 chr3L 16886294 intron Lmpt + chr3L 16886384 intron Lmpt + chr3L 16886473 intron Lmpt + chr3L_4_16885001 chr3L_16885001 RAL-361 2180 chr3L 16912898 16912954 chr3L 16913026 16913082 12 128 12.5 21.0 16.8 0.7 184 chr3L 16912898 intron Lmpt + chr3L 16912990 intron Lmpt + chr3L 16913082 intron Lmpt + chr3L_12_16910001 chr3L_16910001 RAL-361 2181 chr3L 16945692 16945719 chr3L 16954894 16954897 roo 9 9197 16.0 9.5 12.8 0.7 9205 chr3L 16945692 exon Obp73a + chr3L 16950294 intergenic not near genes chr3L 16954897 5` UTR Nc73EF + chr3L_9_16950001 chr3L_16950001 RAL-361 2182 chr3L 17008413 17008433 chr3L 17008539 17008565 6 131 15.0 39.5 27.2 0.2 152 chr3L 17008413 intron CG3764 - chr3L 17008489 intron CG3764 - chr3L 17008565 intron CG3764 - chr3L_6_17005001 chr3L_17005001 RAL-361 2183 chr3L 17026745 17026818 chr3L 17026876 17026949 12 130 21.5 19.0 20.2 0.6 204 chr3L 17026745 exon Fit2 + chr3L 17026847 3` UTR Fit2 + chr3L 17026949 3` UTR Fit2 + chr3L_12_17025001 chr3L_17025001 RAL-361 2184 chr3L 17027128 17027185 chr3L 17027270 17027327 14 142 15.0 18.0 16.5 0.8 199 chr3L 17027128 intergenic Fit2 +,CG7730 + chr3L 17027228 intergenic Fit2 +,CG7730 + chr3L 17027327 intergenic CG7730 +,Fit2 + chr3L_14_17025001 chr3L_17025001 RAL-361 2185 chr3L 17034889 17034962 chr3L 17035122 17035200 G2 30 238 8.5 12.5 10.5 2.6 311 chr3L 17034889 intergenic not near genes chr3L 17035044 intergenic not near genes chr3L 17035200 intergenic beg + chr3L_30_17035001 chr3L_17035001 RAL-361 2186 chr3L 17084960 17085029 chr3L 17094158 17094228 roo 21 9199 11.0 17.0 14.0 1.4 9268 chr3L 17084960 intron Rbp6 - chr3L 17089594 intron Rbp6 - chr3L 17094228 intron Rbp6 - chr3L_21_17085001 chr3L_17085001 RAL-361 2187 chr3L 17222420 17222469 chr3L 17222644 17222697 13 227 18.5 16.0 17.2 0.7 277 chr3L 17222420 intron Rbp6 - chr3L 17222558 intron Rbp6 - chr3L 17222697 intron Rbp6 - chr3L_13_17220001 chr3L_17220001 RAL-361 2188 chr3L 17272194 17272203 chr3L 17272377 17272386 4 183 22.0 15.0 18.5 0.2 192 chr3L 17272194 intergenic not near genes chr3L 17272290 intergenic not near genes chr3L 17272386 intergenic not near genes chr3L_4_17270001 chr3L_17270001 RAL-361 2189 chr3L 17272212 17272261 chr3L 17272374 17272444 15 179 18.5 15.0 16.8 0.8 232 chr3L 17272212 intergenic not near genes chr3L 17272328 intergenic not near genes chr3L 17272444 intergenic not near genes chr3L_15_17270001 chr3L_17270001 RAL-361 2190 chr3L 17331025 17331096 chr3L 17331165 17331221 12 139 35.5 30.0 32.8 0.4 196 chr3L 17331025 intergenic not near genes chr3L 17331123 intergenic not near genes chr3L 17331221 intergenic not near genes chr3L_12_17330001 chr3L_17330001 RAL-361 2191 chr3L 17421913 17421939 chr3L 17422045 17422076 4 133 39.0 38.5 38.8 0.1 163 chr3L 17421913 3` UTR Sec3 - chr3L 17421994 3` UTR Sec3 - chr3L 17422076 3` UTR Sec3 - chr3L_4_17420001 chr3L_17420001 RAL-361 2192 chr3L 17461969 17461997 chr3L 17462164 17462192 13 195 4.5 6.0 5.2 2.1 223 chr3L 17461969 intergenic not near genes chr3L 17462080 intergenic not near genes chr3L 17462192 intergenic not near genes chr3L_13_17460001 chr3L_17460001 RAL-361 2193 chr3L 17488026 17488086 chr3L 17488158 17488218 12 132 18.5 21.5 20.0 0.6 192 chr3L 17488026 intron Oatp74D + chr3L 17488122 5` UTR Oatp74D + chr3L 17488218 5` UTR Oatp74D + chr3L_12_17485001 chr3L_17485001 RAL-361 2194 chr3L 17495177 17495249 chr3L 17495342 17495401 7 150 11.5 11.0 11.2 0.6 224 chr3L 17495177 intron,exon Oatp74D +,edin + chr3L 17495289 intron,3` UTR Oatp74D +,edin + chr3L 17495401 intron Oatp74D + chr3L_7_17495001 chr3L_17495001 RAL-361 2195 chr3L 17510695 17510756 chr3L 17510829 17510890 28 134 7.5 8.5 8.0 3.1 195 chr3L 17510695 exon Oatp74D + chr3L 17510792 intron Oatp74D + chr3L 17510890 intron Oatp74D + chr3L_28_17510001 chr3L_17510001 RAL-361 2196 chr3L 17516937 17517001 chr3L 17524545 17524609 412 31 7606 13.5 6.5 10.0 2.8 7672 chr3L 17516937 intron CG7564 + chr3L 17520773 intron CG7564 + chr3L 17524609 3` UTR CG7564 + chr3L_31_17520001 chr3L_17520001 RAL-361 2197 chr3L 17579539 17579590 chr3L 17579642 17579696 26 126 8.0 7.5 7.8 3.0 157 chr3L 17579539 intron Eip74EF - chr3L 17579618 intron Eip74EF - chr3L 17579696 intron Eip74EF - chr3L_26_17575001 chr3L_17575001 RAL-361 2198 chr3L 17580535 17580577 chr3L 17580761 17580798 12 225 15.5 0.0 7.8 1.4 263 chr3L 17580535 intron Eip74EF - chr3L 17580666 intron Eip74EF - chr3L 17580798 intron Eip74EF - chr3L_12_17580001 chr3L_17580001 RAL-361 2199 chr3L 17585328 17585353 chr3L 17585604 17585664 18 278 59.5 66.0 62.8 0.3 336 chr3L 17585328 intron Eip74EF - chr3L 17585496 intron Eip74EF - chr3L 17585664 intron Eip74EF - chr3L_18_17585001 chr3L_17585001 RAL-361 2200 chr3L 17586923 17586998 chr3L 17587107 17587182 11 184 26.0 35.5 30.8 0.3 259 chr3L 17586923 intron Eip74EF - chr3L 17587052 intron Eip74EF - chr3L 17587182 intron Eip74EF - chr3L_11_17585001 chr3L_17585001 RAL-361 2201 chr3L 17592744 17592811 chr3L 17592885 17592949 32 141 5.0 11.0 8.0 3.6 205 chr3L 17592744 intron Eip74EF - chr3L 17592846 intron Eip74EF - chr3L 17592949 intron Eip74EF - chr3L_32_17590001 chr3L_17590001 RAL-361 2202 chr3L 17594180 17594248 chr3L 17594321 17594389 15 141 42.5 36.5 39.5 0.4 209 chr3L 17594180 intron Eip74EF - chr3L 17594284 intron Eip74EF - chr3L 17594389 intron Eip74EF - chr3L_15_17590001 chr3L_17590001 RAL-361 2203 chr3L 17659680 17659750 chr3L 17659807 17659877 7 127 33.0 31.5 32.2 0.2 197 chr3L 17659680 intergenic Crtc - chr3L 17659778 intergenic Crtc - chr3L 17659877 3` UTR Crtc - chr3L_7_17655001 chr3L_17655001 RAL-361 2204 chr3L 17672002 17672038 chr3L 17672170 17672206 8 168 23.5 33.0 28.2 0.3 204 chr3L 17672002 intron CG34251 + chr3L 17672104 intron CG34251 + chr3L 17672206 intron CG34251 + chr3L_8_17670001 chr3L_17670001 RAL-361 2205 chr3L 17678849 17678894 chr3L 17678983 17679028 27 133 14.0 0.0 7.0 3.4 179 chr3L 17678849 intron CG34251 + chr3L 17678938 intron CG34251 + chr3L 17679028 intron CG34251 + chr3L_27_17675001 chr3L_17675001 RAL-361 2206 chr3L 17730807 17730869 chr3L 17738187 17738249 mdg1 29 7380 12.5 10.0 11.2 2.4 7442 chr3L 17730807 intron Ccn + chr3L 17734528 intron Ccn + chr3L 17738249 intron Ccn + chr3L_29_17730001 chr3L_17730001 RAL-361 2207 chr3L 17789799 17789871 chr3L 17789925 17789987 18 124 6.5 8.0 7.2 2.2 188 chr3L 17789799 intergenic not near genes chr3L 17789893 intergenic not near genes chr3L 17789987 intergenic not near genes chr3L_18_17785001 chr3L_17785001 RAL-361 2208 chr3L 17790576 17790636 chr3L 17790891 17790951 19 315 7.0 6.5 6.8 2.4 375 chr3L 17790576 intergenic not near genes chr3L 17790764 intergenic CG42815 - chr3L 17790951 intergenic CG42815 - chr3L_19_17790001 chr3L_17790001 RAL-361 2209 chr3L 17791891 17791913 chr3L 17792018 17792040 7 127 29.0 22.0 25.5 0.3 149 chr3L 17791891 intergenic CG42816 -,CG42815 - chr3L 17791966 intergenic CG42816 -,CG42815 - chr3L 17792040 intergenic CG42816 - chr3L_7_17790001 chr3L_17790001 RAL-361 2210 chr3L 17799766 17799837 chr3L 17801603 17801674 S-element 39 1836 10.5 10.0 10.2 3.5 1908 chr3L 17799766 intron NUCB1 - chr3L 17800720 intron NUCB1 - chr3L 17801674 intron NUCB1 - chr3L_39_17800001 chr3L_17800001 RAL-361 2211 chr3L 17823629 17823691 chr3L 17823837 17823881 11 206 19.0 22.5 20.8 0.5 252 chr3L 17823629 intron Grd + chr3L 17823755 intron Grd + chr3L 17823881 intron Grd + chr3L_11_17820001 chr3L_17820001 RAL-361 2212 chr3L 17836180 17836234 chr3L 17836307 17836361 5 127 28.5 25.0 26.8 0.2 181 chr3L 17836180 intron Grd + chr3L 17836270 intron Grd + chr3L 17836361 intron Grd + chr3L_5_17835001 chr3L_17835001 RAL-361 2213 chr3L 17884646 17884709 chr3L 17884796 17884858 16 150 14.5 9.0 11.8 1.2 212 chr3L 17884646 intergenic CG5506 - chr3L 17884752 intergenic CG5506 - chr3L 17884858 intergenic CG5506 - chr3L_16_17880001 chr3L_17880001 RAL-361 2214 chr3L 17887856 17887874 chr3L 17887991 17888009 8 135 19.5 18.5 19.0 0.4 153 chr3L 17887856 intron CG7402 + chr3L 17887932 intron CG7402 + chr3L 17888009 intron CG7402 + chr3L_8_17885001 chr3L_17885001 RAL-361 2215 chr3L 17918340 17918387 chr3L 17921182 17921240 opus 16 2851 12.5 13.0 12.8 1.2 2900 chr3L 17918340 intergenic not near genes chr3L 17919790 intergenic not near genes chr3L 17921240 intergenic not near genes chr3L_16_17915001 chr3L_17915001 RAL-361 2216 chr3L 17921829 17921881 chr3L 17921966 17922018 19 137 10.0 5.5 7.8 2.2 189 chr3L 17921829 intergenic not near genes chr3L 17921924 intergenic not near genes chr3L 17922018 intergenic not near genes chr3L_19_17920001 chr3L_17920001 RAL-361 2217 chr3L 17929156 17929210 chr3L 17929436 17929505 10 283 43.5 42.0 42.8 0.2 349 chr3L 17929156 intergenic not near genes chr3L 17929330 intergenic not near genes chr3L 17929505 intergenic not near genes chr3L_10_17925001 chr3L_17925001 RAL-361 2218 chr3L 17946021 17946034 chr3L 17946152 17946165 7 131 13.0 21.0 17.0 0.4 144 chr3L 17946021 3` UTR CG43174 + chr3L 17946093 3` UTR CG43174 + chr3L 17946165 intergenic CG43174 + chr3L_7_17945001 chr3L_17945001 RAL-361 2219 chr3L 17991537 17991584 chr3L 17991665 17991712 23 128 13.0 13.0 13.0 1.6 175 chr3L 17991537 intron Eip75B - chr3L 17991624 intron Eip75B - chr3L 17991712 intron Eip75B - chr3L_23_17990001 chr3L_17990001 RAL-361 2220 chr3L 18016103 18016172 chr3L 18016271 18016340 23 168 8.0 12.0 10.0 2.1 237 chr3L 18016103 intron Eip75B - chr3L 18016222 intron Eip75B - chr3L 18016340 intron Eip75B - chr3L_23_18015001 chr3L_18015001 RAL-361 2221 chr3L 18020522 18020580 chr3L 18020678 18020736 24 153 9.5 4.0 6.8 3.1 214 chr3L 18020522 intron Eip75B - chr3L 18020629 intron Eip75B - chr3L 18020736 intron Eip75B - chr3L_24_18020001 chr3L_18020001 RAL-361 2222 chr3L 18021306 18021380 chr3L 18021448 18021522 29 141 11.0 13.5 12.2 2.2 216 chr3L 18021306 intron Eip75B - chr3L 18021414 intron Eip75B - chr3L 18021522 intron Eip75B - chr3L_29_18020001 chr3L_18020001 RAL-361 2223 chr3L 18029906 18029940 chr3L 18030033 18030067 21 127 14.5 1.0 7.8 2.4 161 chr3L 18029906 intron Eip75B - chr3L 18029986 intron Eip75B - chr3L 18030067 intron Eip75B - chr3L_21_18025001 chr3L_18025001 RAL-361 2224 chr3L 18042201 18042213 chr3L 18042329 18042341 5 128 6.5 3.0 4.8 0.9 140 chr3L 18042201 intron Eip75B - chr3L 18042271 intron Eip75B - chr3L 18042341 intron Eip75B - chr3L_5_18040001 chr3L_18040001 RAL-361 2225 chr3L 18042214 18042471 chr3L 18042327 18042599 16 126 4.5 3.0 3.8 3.3 385 chr3L 18042214 intron Eip75B - chr3L 18042406 intron Eip75B - chr3L 18042599 intron Eip75B - chr3L_16_18040001 chr3L_18040001 RAL-361 2226 chr3L 18044969 18045032 chr3L 18045096 18045158 5 126 13.0 18.5 15.8 0.3 189 chr3L 18044969 intron Eip75B - chr3L 18045064 intron Eip75B - chr3L 18045158 intron Eip75B - chr3L_5_18045001 chr3L_18045001 RAL-361 2227 chr3L 18047661 18047729 chr3L 18056767 18056835 roo 23 9105 7.0 3.5 5.2 3.7 9174 chr3L 18047661 intron Eip75B - chr3L 18052248 intron Eip75B - chr3L 18056835 intron Eip75B - chr3L_23_18050001 chr3L_18050001 RAL-361 2228 chr3L 18057927 18058010 chr3L 18058078 18058160 24 149 3.0 5.5 4.2 4.6 233 chr3L 18057927 intron Eip75B - chr3L 18058044 intron Eip75B - chr3L 18058160 intron Eip75B - chr3L_24_18055001 chr3L_18055001 RAL-361 2229 chr3L 18066808 18066845 chr3L 18066984 18067021 5 176 29.5 22.0 25.8 0.2 213 chr3L 18066808 intergenic not near genes chr3L 18066914 intergenic not near genes chr3L 18067021 intergenic not near genes chr3L_5_18065001 chr3L_18065001 RAL-361 2230 chr3L 18077906 18077954 chr3L 18078053 18078086 17 143 19.5 14.5 17.0 0.9 180 chr3L 18077906 5` UTR CR45392 + chr3L 18077996 5` UTR CR45392 + chr3L 18078086 5` UTR CR45392 + chr3L_17_18075001 chr3L_18075001 RAL-361 2231 chr3L 18092087 18092141 chr3L 18092219 18092273 5 132 0.0 7.0 3.5 1.1 186 chr3L 18092087 intron CG13698 - chr3L 18092180 intron CG13698 - chr3L 18092273 intron CG13698 - chr3L_5_18090001 chr3L_18090001 RAL-361 2232 chr3L 18093724 18093781 chr3L 18093836 18093908 21 121 16.5 13.0 14.8 1.3 184 chr3L 18093724 intron CG13698 - chr3L 18093816 intron CG13698 - chr3L 18093908 intron CG13698 - chr3L_21_18090001 chr3L_18090001 RAL-361 2233 chr3L 18106207 18106284 chr3L 18106376 18106413 21 159 6.0 0.5 3.2 5.0 206 chr3L 18106207 intergenic CG13698 -,mRpS26 + chr3L 18106310 intergenic CG13698 -,mRpS26 + chr3L 18106413 intergenic mRpS26 +,CG13698 - chr3L_21_18105001 chr3L_18105001 RAL-361 2234 chr3L 18107673 18107734 chr3L 18107810 18107871 27 137 20.0 15.5 17.8 1.4 198 chr3L 18107673 intergenic mRpS26 +,CG5147 - chr3L 18107772 intergenic CG5147 -,mRpS26 + chr3L 18107871 3` UTR CG5147 - chr3L_27_18105001 chr3L_18105001 RAL-361 2235 chr3L 18118622 18118674 chr3L 18118771 18118823 16 149 16.5 17.0 16.8 0.9 201 chr3L 18118622 3` UTR,intron CG32195 +,CG7341 + chr3L 18118722 3` UTR,intron CG32195 +,CG7341 + chr3L 18118823 3` UTR,intron CG32195 +,CG7341 + chr3L_16_18115001 chr3L_18115001 RAL-361 2236 chr3L 18119596 18119663 chr3L 18119758 18119811 5 159 1.5 12.5 7.0 0.6 215 chr3L 18119596 intron CG7341 + chr3L 18119704 intron CG7341 + chr3L 18119811 5` UTR CG7341 + chr3L_5_18115001 chr3L_18115001 RAL-361 2237 chr3L 18124374 18124428 chr3L 18124508 18124562 22 134 11.5 16.5 14.0 1.5 188 chr3L 18124374 intergenic not near genes chr3L 18124468 intergenic not near genes chr3L 18124562 intergenic not near genes chr3L_22_18120001 chr3L_18120001 RAL-361 2238 chr3L 18136308 18136373 chr3L 18138942 18139007 5 2634 35.0 18.5 26.8 0.2 2699 chr3L 18136308 intergenic CR44669 - chr3L 18137658 intergenic not near genes chr3L 18139007 intergenic gk + chr3L_5_18135001 chr3L_18135001 RAL-361 2239 chr3L 18154042 18154092 chr3L 18154176 18154215 6 131 27.0 29.5 28.2 0.2 173 chr3L 18154042 intergenic CG7330 + chr3L 18154128 intergenic CG7330 + chr3L 18154215 intergenic CG7330 + chr3L_6_18150001 chr3L_18150001 RAL-361 2240 chr3L 18160626 18160664 chr3L 18160758 18160796 11 132 19.5 18.5 19.0 0.6 170 chr3L 18160626 intron CG13699 - chr3L 18160711 intron CG13699 - chr3L 18160796 intron CG13699 - chr3L_11_18160001 chr3L_18160001 RAL-361 2241 chr3L 18172654 18172704 chr3L 18172780 18172830 18 126 11.5 9.0 10.2 1.6 176 chr3L 18172654 intron W - chr3L 18172742 intron W - chr3L 18172830 intron W - chr3L_18_18170001 chr3L_18170001 RAL-361 2242 chr3L 18175769 18175836 chr3L 18176058 18176125 22 289 13.5 10.5 12.0 1.7 356 chr3L 18175769 intron W - chr3L 18175947 intron W - chr3L 18176125 intron W - chr3L_22_18175001 chr3L_18175001 RAL-361 2243 chr3L 18180912 18180982 chr3L 18181045 18181119 8 134 4.5 6.5 5.5 1.2 207 chr3L 18180912 intron W - chr3L 18181016 intron W - chr3L 18181119 intron W - chr3L_8_18180001 chr3L_18180001 RAL-361 2244 chr3L 18198930 18198930 chr3L 24821492 24821494 4 6622563 1.0 25.5 13.2 0.3 6622564 chr3L 18198930 intergenic not near genes chr3L 21510212 intron M6 + chr3L 24821494 intergenic not near genes chr3L_4_21510001 chr3L_21510001 RAL-361 2245 chr3L 18198931 18198931 chr3L 24821494 24821494 6 6622563 0.5 26.0 13.2 0.4 6622563 chr3L 18198931 intergenic not near genes chr3L 21510212 intron M6 + chr3L 24821494 intergenic not near genes chr3L_6_21510001 chr3L_21510001 RAL-361 2246 chr3L 18210691 18210749 chr3L 18210817 18210875 8 126 12.0 14.0 13.0 0.6 184 chr3L 18210691 intergenic not near genes chr3L 18210783 intergenic not near genes chr3L 18210875 intergenic not near genes chr3L_8_18210001 chr3L_18210001 RAL-361 2247 chr3L 18214478 18214540 chr3L 18214608 18214666 13 127 13.0 12.0 12.5 1.0 188 chr3L 18214478 intergenic not near genes chr3L 18214572 intergenic not near genes chr3L 18214666 intergenic not near genes chr3L_13_18210001 chr3L_18210001 RAL-361 2248 chr3L 18221042 18221130 chr3L 18221184 18221265 15 132 0.0 3.5 1.8 5.4 223 chr3L 18221042 intergenic not near genes chr3L 18221154 intergenic not near genes chr3L 18221265 intergenic not near genes chr3L_15_18220001 chr3L_18220001 RAL-361 2249 chr3L 18223115 18223186 chr3L 18223248 18223331 18 136 7.5 0.0 3.8 3.8 216 chr3L 18223115 intergenic not near genes chr3L 18223223 intergenic not near genes chr3L 18223331 intergenic not near genes chr3L_18_18220001 chr3L_18220001 RAL-361 2250 chr3L 18251706 18251779 chr3L 18251849 18251922 19 143 12.5 10.5 11.5 1.5 216 chr3L 18251706 intergenic CheA75a + chr3L 18251814 intergenic CheA75a + chr3L 18251922 intergenic CheA75a + chr3L_19_18250001 chr3L_18250001 RAL-361 2251 chr3L 18262429 18262488 chr3L 18262562 18262622 9 133 19.5 19.0 19.2 0.4 193 chr3L 18262429 intergenic not near genes chr3L 18262526 intergenic not near genes chr3L 18262622 intergenic not near genes chr3L_9_18260001 chr3L_18260001 RAL-361 2252 chr3L 18283888 18283956 chr3L 18284015 18284083 22 127 15.5 14.5 15.0 1.4 195 chr3L 18283888 intergenic not near genes chr3L 18283986 intergenic not near genes chr3L 18284083 intergenic not near genes chr3L_22_18280001 chr3L_18280001 RAL-361 2253 chr3L 18301310 18301339 chr3L 18301448 18301478 4 138 10.5 8.5 9.5 0.4 168 chr3L 18301310 intergenic CG13700 - chr3L 18301394 intergenic CG13700 - chr3L 18301478 intergenic CG13700 - chr3L_4_18300001 chr3L_18300001 RAL-361 2254 chr3L 18301344 18301380 chr3L 18301483 18301519 16 139 2.0 12.5 7.2 2.0 175 chr3L 18301344 intergenic CG13700 - chr3L 18301432 intergenic CG13700 - chr3L 18301519 intergenic CG13700 - chr3L_16_18300001 chr3L_18300001 RAL-361 2255 chr3L 18325706 18325741 chr3L 18325835 18325870 7 129 8.0 3.0 5.5 1.1 164 chr3L 18325706 intergenic not near genes chr3L 18325788 intergenic not near genes chr3L 18325870 intergenic not near genes chr3L_7_18325001 chr3L_18325001 RAL-361 2256 chr3L 18326117 18326165 chr3L 18326419 18326467 4 302 21.0 31.0 26.0 0.1 350 chr3L 18326117 intergenic not near genes chr3L 18326292 intergenic not near genes chr3L 18326467 intergenic not near genes chr3L_4_18325001 chr3L_18325001 RAL-361 2257 chr3L 18345084 18345122 chr3L 18345197 18345250 5 125 8.5 16.5 12.5 0.4 166 chr3L 18345084 intergenic not near genes chr3L 18345167 intergenic not near genes chr3L 18345250 intergenic not near genes chr3L_5_18345001 chr3L_18345001 RAL-361 2258 chr3L 18359555 18359627 chr3L 18359697 18359769 17 142 14.5 15.0 14.8 1.1 214 chr3L 18359555 intergenic not near genes chr3L 18359662 intergenic not near genes chr3L 18359769 intergenic not near genes chr3L_17_18355001 chr3L_18355001 RAL-361 2259 chr3L 18406081 18406152 chr3L 18406207 18406278 29 125 4.0 6.5 5.2 4.7 197 chr3L 18406081 intergenic not near genes chr3L 18406180 intergenic not near genes chr3L 18406278 intergenic not near genes chr3L_29_18405001 chr3L_18405001 RAL-361 2260 chr3L 18408687 18408756 chr3L 18408823 18408890 18 135 3.5 5.0 4.2 3.5 203 chr3L 18408687 intergenic not near genes chr3L 18408788 intergenic not near genes chr3L 18408890 intergenic not near genes chr3L_18_18405001 chr3L_18405001 RAL-361 2261 chr3L 9013689 9013694 chr3L 18417066 18417066 7 9403375 34.5 28.0 31.2 0.2 9403377 chr3L 9013689 intron Doc2 - chr3L 13715378 intron bru-3 - chr3L 18417066 intergenic not near genes chr3L_7_13715001 chr3L_13715001 RAL-361 2262 chr3L 18423703 18423710 chr3L 18423834 18423841 4 131 13.5 13.5 13.5 0.3 138 chr3L 18423703 intergenic not near genes chr3L 18423772 intergenic not near genes chr3L 18423841 intergenic not near genes chr3L_4_18420001 chr3L_18420001 RAL-361 2263 chr3L 18448573 18448620 chr3L 18448715 18448762 28 142 15.0 7.5 11.2 2.3 189 chr3L 18448573 intergenic not near genes chr3L 18448668 intergenic not near genes chr3L 18448762 intergenic not near genes chr3L_28_18445001 chr3L_18445001 RAL-361 2264 chr3L 18456231 18456296 chr3L 18456369 18456434 7 138 24.0 19.5 21.8 0.3 203 chr3L 18456231 intergenic CR44670 - chr3L 18456332 intergenic CR44670 - chr3L 18456434 3` UTR CR44670 - chr3L_7_18455001 chr3L_18455001 RAL-361 2265 chr3L 18464456 18464463 chr3L 18464577 18464599 4 128 19.0 9.5 14.2 0.3 143 chr3L 18464456 intergenic not near genes chr3L 18464528 intergenic not near genes chr3L 18464599 intergenic not near genes chr3L_4_18460001 chr3L_18460001 RAL-361 2266 chr3L 18464473 18464513 chr3L 18464573 18464649 17 130 8.0 9.5 8.8 1.7 176 chr3L 18464473 intergenic not near genes chr3L 18464561 intergenic not near genes chr3L 18464649 intergenic not near genes chr3L_17_18460001 chr3L_18460001 RAL-361 2267 chr3L 18479044 18479089 chr3L 18479171 18479241 14 142 2.5 6.0 4.2 2.7 197 chr3L 18479044 5` UTR CR44673 + chr3L 18479142 5` UTR CR44673 + chr3L 18479241 intergenic CR44673 + chr3L_14_18475001 chr3L_18475001 RAL-361 2268 chr3L 18484676 18484729 chr3L 18488595 18488662 4 3940 40.0 37.5 38.8 0.1 3986 chr3L 18484676 intergenic AstC-R2 - chr3L 18486669 3` UTR AstC-R2 - chr3L 18488662 exon AstC-R2 - chr3L_4_18485001 chr3L_18485001 RAL-361 2269 chr3L 18494874 18494943 chr3L 18495116 18495185 26 242 8.5 8.0 8.2 2.8 311 chr3L 18494874 intron AstC-R2 - chr3L 18495030 intron AstC-R2 - chr3L 18495185 intron AstC-R2 - chr3L_26_18495001 chr3L_18495001 RAL-361 2270 chr3L 18506095 18506154 chr3L 18509608 18509654 F-element 24 3512 4.0 14.0 9.0 2.4 3559 chr3L 18506095 intergenic not near genes chr3L 18507874 intergenic not near genes chr3L 18509654 intergenic not near genes chr3L_24_18505001 chr3L_18505001 RAL-361 2271 chr3L 18528586 18528653 chr3L 18537796 18537817 roo 28 9209 13.0 11.0 12.0 2.2 9231 chr3L 18528586 intergenic not near genes chr3L 18533202 intergenic not near genes chr3L 18537817 intergenic not near genes chr3L_28_18530001 chr3L_18530001 RAL-361 2272 chr3L 18538579 18538658 chr3L 18539122 18539165 28 541 14.0 10.0 12.0 2.2 586 chr3L 18538579 intergenic not near genes chr3L 18538872 intergenic not near genes chr3L 18539165 intergenic not near genes chr3L_28_18535001 chr3L_18535001 RAL-361 2273 chr3L 18549017 18549078 chr3L 18549316 18549355 8 293 15.0 11.0 13.0 0.6 338 chr3L 18549017 intergenic not near genes chr3L 18549186 intergenic not near genes chr3L 18549355 intergenic not near genes chr3L_8_18545001 chr3L_18545001 RAL-361 2274 chr3L 18549780 18549831 chr3L 18549921 18549984 12 145 7.0 4.0 5.5 1.8 204 chr3L 18549780 intergenic not near genes chr3L 18549882 intergenic not near genes chr3L 18549984 intergenic not near genes chr3L_12_18545001 chr3L_18545001 RAL-361 2275 chr3L 18555059 18555079 chr3L 18555193 18555213 6 134 16.0 6.0 11.0 0.5 154 chr3L 18555059 intergenic not near genes chr3L 18555136 intergenic not near genes chr3L 18555213 intergenic not near genes chr3L_6_18555001 chr3L_18555001 RAL-361 2276 chr3L 18566995 18567046 chr3L 18567114 18567182 4 132 32.0 32.5 32.2 0.1 187 chr3L 18566995 intron AstC-R1 + chr3L 18567088 intron AstC-R1 + chr3L 18567182 intron AstC-R1 + chr3L_4_18565001 chr3L_18565001 RAL-361 2277 chr3L 18585508 18585553 chr3L 18585634 18585679 5 126 14.0 13.5 13.8 0.3 171 chr3L 18585508 intergenic not near genes chr3L 18585594 intergenic not near genes chr3L 18585679 intergenic not near genes chr3L_5_18585001 chr3L_18585001 RAL-361 2278 chr3L 18590219 18590282 chr3L 18590351 18590374 14 128 21.5 28.5 25.0 0.5 155 chr3L 18590219 intergenic CG7271 + chr3L 18590296 intergenic CG7271 + chr3L 18590374 intergenic CG7271 + chr3L_14_18590001 chr3L_18590001 RAL-361 2279 chr3L 18593911 18593980 chr3L 18595941 18596013 Doc 14 2031 5.0 1.0 3.0 3.5 2102 chr3L 18593911 intergenic term - chr3L 18594962 intergenic not near genes chr3L 18596013 intergenic CR45389 + chr3L_14_18590001 chr3L_18590001 RAL-361 2280 chr3L 18606715 18606776 chr3L 18606963 18607024 14 244 12.5 11.5 12.0 1.1 309 chr3L 18606715 intron,intron,exon CG13380 -,CG4174 -,CG18233 + chr3L 18606870 intron,intron,exon CG13380 -,CG4174 -,CG18233 + chr3L 18607024 intron,intron,intron CG13380 -,CG4174 -,CG18233 + chr3L_14_18605001 chr3L_18605001 RAL-361 2281 chr3L 18638570 18638601 chr3L 18638669 18638745 16 140 4.0 5.5 4.8 2.8 175 chr3L 18638570 intron MYPT-75D + chr3L 18638658 intron MYPT-75D + chr3L 18638745 intron MYPT-75D + chr3L_16_18635001 chr3L_18635001 RAL-361 2282 chr3L 18647648 18647665 chr3L 18647791 18647808 5 143 25.0 14.5 19.8 0.2 160 chr3L 18647648 intron MYPT-75D + chr3L 18647728 intron MYPT-75D + chr3L 18647808 intron MYPT-75D + chr3L_5_18645001 chr3L_18645001 RAL-361 2283 chr3L 18710720 18710786 chr3L 18718722 18718786 Stalker2 33 8001 7.0 9.5 8.2 3.6 8066 chr3L 18710720 intergenic not near genes chr3L 18714753 intergenic not near genes chr3L 18718786 intergenic not near genes chr3L_33_18710001 chr3L_18710001 RAL-361 2284 chr3L 18719403 18719420 chr3L 18719739 18719756 5 334 35.5 34.5 35.0 0.1 353 chr3L 18719403 intergenic not near genes chr3L 18719580 intergenic not near genes chr3L 18719756 intergenic not near genes chr3L_5_18715001 chr3L_18715001 RAL-361 2285 chr3L 18719425 18719476 chr3L 18719738 18719812 9 328 29.5 34.0 31.8 0.3 387 chr3L 18719425 intergenic not near genes chr3L 18719618 intergenic not near genes chr3L 18719812 intergenic not near genes chr3L_9_18715001 chr3L_18715001 RAL-361 2286 chr3L 18721722 18721801 chr3L 18721863 18721942 22 137 7.5 10.0 8.8 2.2 220 chr3L 18721722 intergenic CG12477 - chr3L 18721832 intergenic CG12477 - chr3L 18721942 3` UTR CG12477 - chr3L_22_18720001 chr3L_18720001 RAL-361 2287 chr3L 18730360 18730395 chr3L 18730590 18730625 5 230 21.0 28.5 24.8 0.2 265 chr3L 18730360 intergenic not near genes chr3L 18730492 intergenic not near genes chr3L 18730625 intergenic not near genes chr3L_5_18730001 chr3L_18730001 RAL-361 2288 chr3L 18736019 18736034 chr3L 18736164 18736179 4 145 32.0 37.5 34.8 0.1 160 chr3L 18736019 intergenic not near genes chr3L 18736099 intergenic not near genes chr3L 18736179 intergenic not near genes chr3L_4_18735001 chr3L_18735001 RAL-361 2289 chr3L 18753497 18753561 chr3L 18753629 18753694 28 132 8.0 11.5 9.8 2.6 197 chr3L 18753497 intron ftz-f1 - chr3L 18753596 intron ftz-f1 - chr3L 18753694 intron ftz-f1 - chr3L_28_18750001 chr3L_18750001 RAL-361 2290 chr3L 18770605 18770610 chr3L 18770740 18770745 4 135 20.0 4.5 12.2 0.3 140 chr3L 18770605 intron ftz-f1 - chr3L 18770675 intron ftz-f1 - chr3L 18770745 intron ftz-f1 - chr3L_4_18770001 chr3L_18770001 RAL-361 2291 chr3L 18770612 18770674 chr3L 18770737 18770809 30 134 7.5 4.5 6.0 4.3 197 chr3L 18770612 intron ftz-f1 - chr3L 18770710 intron ftz-f1 - chr3L 18770809 intron ftz-f1 - chr3L_30_18770001 chr3L_18770001 RAL-361 2292 chr3L 18772366 18772435 chr3L 18781097 18781156 roo 28 8730 6.0 11.0 8.5 2.9 8790 chr3L 18772366 intron ftz-f1 - chr3L 18776761 intron ftz-f1 - chr3L 18781156 intron ftz-f1 - chr3L_28_18775001 chr3L_18775001 RAL-361 2293 chr3L 18784345 18784405 chr3L 18784484 18784544 32 139 8.5 11.0 9.8 3.0 199 chr3L 18784345 intron ftz-f1 - chr3L 18784444 intron ftz-f1 - chr3L 18784544 intron ftz-f1 - chr3L_32_18780001 chr3L_18780001 RAL-361 2294 chr3L 18784702 18784711 chr3L 18784850 18784859 INE-1 6 148 19.0 12.5 15.8 0.4 157 chr3L 18784702 intron ftz-f1 - chr3L 18784780 intron ftz-f1 - chr3L 18784859 intron ftz-f1 - chr3L_6_18780001 chr3L_18780001 RAL-361 2295 chr3L 18784715 18784727 chr3L 18784847 18784875 INE-1 5 144 15.5 11.5 13.5 0.3 160 chr3L 18784715 intron ftz-f1 - chr3L 18784795 intron ftz-f1 - chr3L 18784875 intron ftz-f1 - chr3L_5_18780001 chr3L_18780001 RAL-361 2296 chr3L 18792525 18792600 chr3L 18792657 18792732 33 131 9.5 11.5 10.5 2.9 207 chr3L 18792525 intron ftz-f1 - chr3L 18792628 intron ftz-f1 - chr3L 18792732 intron ftz-f1 - chr3L_33_18790001 chr3L_18790001 RAL-361 2297 chr3L 18810099 18810175 chr3L 18810226 18810307 30 131 3.5 1.0 2.2 9.4 208 chr3L 18810099 intron CG14073 - chr3L 18810203 intron CG14073 - chr3L 18810307 intron CG14073 - chr3L_30_18810001 chr3L_18810001 RAL-361 2298 chr3L 18820837 18820903 chr3L 18821066 18821132 27 229 7.0 9.0 8.0 3.0 295 chr3L 18820837 intergenic CG14073 -,HipHop + chr3L 18820984 intergenic HipHop +,CG14073 - chr3L 18821132 intergenic HipHop +,CG14073 - chr3L_27_18820001 chr3L_18820001 RAL-361 2299 chr3L 18831637 18831661 chr3L 18831841 18831865 12 203 13.5 5.0 9.2 1.2 228 chr3L 18831637 intron Indy - chr3L 18831751 intron Indy - chr3L 18831865 intron Indy - chr3L_12_18830001 chr3L_18830001 RAL-361 2300 chr3L 18832563 18832641 chr3L 18832698 18832769 25 128 9.0 9.0 9.0 2.5 206 chr3L 18832563 intron Indy - chr3L 18832666 intron Indy - chr3L 18832769 intron Indy - chr3L_25_18830001 chr3L_18830001 RAL-361 2301 chr3L 18833744 18833810 chr3L 18834958 18835009 1360 19 1210 8.0 7.5 7.8 2.2 1265 chr3L 18833744 intron Indy - chr3L 18834376 intron Indy - chr3L 18835009 intron Indy - chr3L_19_18830001 chr3L_18830001 RAL-361 2302 chr3L 18838477 18838545 chr3L 18838607 18838675 13 130 5.0 0.0 2.5 3.7 198 chr3L 18838477 intron Indy - chr3L 18838576 intron Indy - chr3L 18838675 intron Indy - chr3L_13_18835001 chr3L_18835001 RAL-361 2303 chr3L 18839697 18839757 chr3L 18839830 18839890 15 133 7.0 7.0 7.0 1.9 193 chr3L 18839697 intron Indy - chr3L 18839794 intron Indy - chr3L 18839890 intron Indy - chr3L_15_18835001 chr3L_18835001 RAL-361 2304 chr3L 18840843 18840891 chr3L 18841034 18841082 21 191 5.0 12.5 8.8 2.1 239 chr3L 18840843 intron Indy - chr3L 18840962 intron Indy - chr3L 18841082 intron Indy - chr3L_21_18840001 chr3L_18840001 RAL-361 2305 chr3L 18885956 18886013 chr3L 18886082 18886139 20 125 0.0 10.5 5.2 3.2 183 chr3L 18885956 intron CG3961 - chr3L 18886048 intron CG3961 - chr3L 18886139 intron CG3961 - chr3L_20_18885001 chr3L_18885001 RAL-361 2306 chr3L 18916441 18916455 chr3L 18916597 18916610 8 156 21.0 8.5 14.8 0.5 169 chr3L 18916441 intergenic not near genes chr3L 18916526 intergenic not near genes chr3L 18916610 intergenic not near genes chr3L_8_18915001 chr3L_18915001 RAL-361 2307 chr3L 18916458 18916482 chr3L 18916594 18916637 16 151 15.5 6.0 10.8 1.4 179 chr3L 18916458 intergenic not near genes chr3L 18916548 intergenic not near genes chr3L 18916637 intergenic not near genes chr3L_16_18915001 chr3L_18915001 RAL-361 2308 chr3L 18916484 18916514 chr3L 18916593 18916668 12 148 7.0 6.0 6.5 1.6 184 chr3L 18916484 intergenic not near genes chr3L 18916576 intergenic not near genes chr3L 18916668 intergenic not near genes chr3L_12_18915001 chr3L_18915001 RAL-361 2309 chr3L 18933587 18933655 chr3L 18933731 18933798 19 143 9.5 11.0 10.2 1.7 211 chr3L 18933587 intron CG32204 - chr3L 18933692 intron CG32204 - chr3L 18933798 intron CG32204 - chr3L_19_18930001 chr3L_18930001 RAL-361 2310 chr3L 18935785 18935861 chr3L 18935924 18936000 35 139 10.0 5.5 7.8 4.0 215 chr3L 18935785 intron CG32204 - chr3L 18935892 intron CG32204 - chr3L 18936000 intron CG32204 - chr3L_35_18935001 chr3L_18935001 RAL-361 2311 chr3L 19008803 19008867 chr3L 19009191 19009255 jockey 26 387 9.0 7.0 8.0 2.9 452 chr3L 19008803 intron nkd - chr3L 19009029 intron nkd - chr3L 19009255 intron nkd - chr3L_26_19005001 chr3L_19005001 RAL-361 2312 chr3L 19039884 19039956 chr3L 19040027 19040059 25 138 8.5 5.5 7.0 3.1 175 chr3L 19039884 intron nkd - chr3L 19039972 intron nkd - chr3L 19040059 intron nkd - chr3L_25_19035001 chr3L_19035001 RAL-361 2313 chr3L 19115602 19115612 chr3L 19115826 19115842 BS 6 228 17.0 12.5 14.8 0.4 240 chr3L 19115602 intron CG14082 - chr3L 19115722 intron CG14082 - chr3L 19115842 intron CG14082 - chr3L_6_19115001 chr3L_19115001 RAL-361 2314 chr3L 19115614 19115667 chr3L 19115825 19115876 BS 21 227 10.0 12.5 11.2 1.7 262 chr3L 19115614 intron CG14082 - chr3L 19115745 intron CG14082 - chr3L 19115876 intron CG14082 - chr3L_21_19115001 chr3L_19115001 RAL-361 2315 chr3L 19117010 19117067 chr3L 19124498 19124564 mdg1 27 7493 11.5 11.5 11.5 2.2 7554 chr3L 19117010 intron CG14082 - chr3L 19120787 intron CG14082 - chr3L 19124564 intron CG14082 - chr3L_27_19120001 chr3L_19120001 RAL-361 2316 chr3L 19195199 19195272 chr3L 19195340 19195348 37 129 10.5 8.5 9.5 3.5 149 chr3L 19195199 intron fz2 - chr3L 19195274 intron fz2 - chr3L 19195348 intron fz2 - chr3L_37_19195001 chr3L_19195001 RAL-361 2317 chr3L 19208015 19208091 chr3L 19209439 19209488 Doc 29 1418 6.0 11.5 8.8 3.0 1473 chr3L 19208015 intron fz2 - chr3L 19208752 intron fz2 - chr3L 19209488 intron fz2 - chr3L_29_19205001 chr3L_19205001 RAL-361 2318 chr3L 19220632 19220634 chr3L 22908066 22908067 13 3687433 37.5 48.5 43.0 0.3 3687435 chr3L 19220632 intron fz2 - chr3L 21064350 intron siz + chr3L 22908067 intergenic not near genes chr3L_13_21060001 chr3L_21060001 RAL-361 2319 chr3L 19262165 19262235 chr3L 19262297 19262367 45 132 11.0 9.5 10.2 4.0 202 chr3L 19262165 3` UTR Bet1 + chr3L 19262266 3` UTR,3` UTR Bet1 +,Max - chr3L 19262367 3` UTR,3` UTR Bet1 +,Max - chr3L_45_19260001 chr3L_19260001 RAL-361 2320 chr3L 19263190 19263259 chr3L 19263401 19263470 34 208 10.0 7.0 8.5 3.6 280 chr3L 19263190 exon Max - chr3L 19263330 intron Max - chr3L 19263470 exon Max - chr3L_34_19260001 chr3L_19260001 RAL-361 2321 chr3L 19274135 19274193 chr3L 19274264 19274322 30 127 9.0 6.0 7.5 3.5 187 chr3L 19274135 3` UTR CG14085 + chr3L 19274228 intergenic CG14085 + chr3L 19274322 intergenic CG14085 + chr3L_30_19270001 chr3L_19270001 RAL-361 2322 chr3L 19274197 19274208 chr3L 19274326 19274337 4 129 5.0 16.5 10.8 0.3 140 chr3L 19274197 intergenic CG14085 + chr3L 19274267 intergenic CG14085 + chr3L 19274337 intergenic CG14085 + chr3L_4_19270001 chr3L_19270001 RAL-361 2323 chr3L 19319625 19319645 chr3L 19319751 19319771 9 126 7.0 15.0 11.0 0.8 146 chr3L 19319625 intron pip - chr3L 19319698 intron pip - chr3L 19319771 intron pip - chr3L_9_19315001 chr3L_19315001 RAL-361 2324 chr3L 19328770 19328827 chr3L 19328996 19329053 21 223 4.5 14.5 9.5 2.0 283 chr3L 19328770 intron pip - chr3L 19328912 intron pip - chr3L 19329053 intron pip - chr3L_21_19325001 chr3L_19325001 RAL-361 2325 chr3L 19339820 19339834 chr3L 19339962 19339969 4 140 12.0 8.5 10.2 0.4 149 chr3L 19339820 intergenic CG32206 - chr3L 19339894 intergenic CG32206 - chr3L 19339969 intergenic CG32206 - chr3L_4_19335001 chr3L_19335001 RAL-361 2326 chr3L 19339840 19339886 chr3L 19339954 19339967 14 119 5.5 6.0 5.8 2.1 127 chr3L 19339840 intergenic CG32206 - chr3L 19339904 intergenic CG32206 - chr3L 19339967 intergenic CG32206 - chr3L_14_19335001 chr3L_19335001 RAL-361 2327 chr3L 19379142 19379198 chr3L 19379279 19379335 19 137 8.5 11.0 9.8 1.8 193 chr3L 19379142 intron CG32206 - chr3L 19379238 intron CG32206 - chr3L 19379335 intron CG32206 - chr3L_19_19375001 chr3L_19375001 RAL-361 2328 chr3L 19398888 19398930 chr3L 19403655 19403697 F-element 12 4764 5.0 9.0 7.0 1.5 4809 chr3L 19398888 intron CG32206 - chr3L 19401292 intron CG32206 - chr3L 19403697 intron CG32206 - chr3L_12_19400001 chr3L_19400001 RAL-361 2329 chr3L 19439207 19439283 chr3L 19439355 19439428 14 148 5.5 7.0 6.2 1.9 221 chr3L 19439207 intergenic not near genes chr3L 19439318 intergenic not near genes chr3L 19439428 intergenic CR45732 - chr3L_14_19435001 chr3L_19435001 RAL-361 2330 chr3L 19488476 19488500 chr3L 19488608 19488632 16 132 12.0 19.0 15.5 1.0 156 chr3L 19488476 intergenic pncr009:3L -,CG32212 + chr3L 19488554 intergenic pncr009:3L -,CG32212 + chr3L 19488632 intergenic pncr009:3L -,CG32212 + chr3L_16_19485001 chr3L_19485001 RAL-361 2331 chr3L 19636231 19636295 chr3L 19636357 19636421 40 126 12.5 11.0 11.8 3.1 190 chr3L 19636231 intergenic wnd - chr3L 19636326 intergenic not near genes chr3L 19636421 intergenic not near genes chr3L_40_19635001 chr3L_19635001 RAL-361 2332 chr3L 19645132 19645194 chr3L 19645262 19645324 28 130 9.0 9.5 9.2 2.7 192 chr3L 19645132 intergenic not near genes chr3L 19645228 intergenic not near genes chr3L 19645324 intergenic not near genes chr3L_28_19645001 chr3L_19645001 RAL-361 2333 chr3L 19703811 19703873 chr3L 19704015 19704077 29 203 8.0 10.5 9.2 2.8 266 chr3L 19703811 intron serp - chr3L 19703944 intron serp - chr3L 19704077 intron serp - chr3L_29_19700001 chr3L_19700001 RAL-361 2334 chr3L 19820250 19820317 chr3L 19827849 19827916 412 28 7599 7.5 7.0 7.2 3.4 7666 chr3L 19820250 intron Deaf1 + chr3L 19824083 intron Deaf1 + chr3L 19827916 intron Deaf1 + chr3L_28_19820001 chr3L_19820001 RAL-361 2335 chr3L 19846563 19846631 chr3L 19846711 19846779 27 148 11.0 10.5 10.8 2.3 216 chr3L 19846563 intron Papss + chr3L 19846671 intron Papss + chr3L 19846779 intron Papss + chr3L_27_19845001 chr3L_19845001 RAL-361 2336 chr3L 19848475 19848531 chr3L 19857716 19857772 roo 23 9239 9.5 11.0 10.2 2.1 9297 chr3L 19848475 intron Papss + chr3L 19853124 intron Papss + chr3L 19857772 intron Papss + chr3L_23_19850001 chr3L_19850001 RAL-361 2337 chr3L 19861782 19861848 chr3L 19863620 19863677 S-element 30 1837 8.0 13.0 10.5 2.6 1895 chr3L 19861782 5` UTR CR45433 + chr3L 19862730 intergenic not near genes chr3L 19863677 intergenic not near genes chr3L_30_19860001 chr3L_19860001 RAL-361 2338 chr3L 19992064 19992112 chr3L 19992185 19992239 17 127 12.0 13.5 12.8 1.2 175 chr3L 19992064 intron,intron CG7646 +,Nca + chr3L 19992152 intron,intron CG7646 +,Nca + chr3L 19992239 intron,intron CG7646 +,Nca + chr3L_17_19990001 chr3L_19990001 RAL-361 2339 chr3L 20042560 20042598 chr3L 20042762 20042777 14 198 4.5 14.0 9.2 1.4 217 chr3L 20042560 intergenic not near genes chr3L 20042668 intergenic not near genes chr3L 20042777 intergenic not near genes chr3L_14_20040001 chr3L_20040001 RAL-361 2340 chr3L 20051164 20051240 chr3L 20051298 20051374 27 133 7.5 5.0 6.2 3.8 210 chr3L 20051164 intergenic not near genes chr3L 20051269 intergenic not near genes chr3L 20051374 intergenic not near genes chr3L_27_20050001 chr3L_20050001 RAL-361 2341 chr3L 20083390 20083424 chr3L 20083521 20083543 9 127 15.5 16.5 16.0 0.5 153 chr3L 20083390 intron sNPF-R - chr3L 20083466 intron sNPF-R - chr3L 20083543 intron sNPF-R - chr3L_9_20080001 chr3L_20080001 RAL-361 2342 chr3L 20086753 20086803 chr3L 20086881 20086931 11 128 24.0 24.5 24.2 0.4 178 chr3L 20086753 intron sNPF-R - chr3L 20086842 intron sNPF-R - chr3L 20086931 intron sNPF-R - chr3L_11_20085001 chr3L_20085001 RAL-361 2343 chr3L 20113442 20113502 chr3L 20113587 20113647 15 144 31.0 30.5 30.8 0.5 205 chr3L 20113442 intergenic not near genes chr3L 20113544 intergenic not near genes chr3L 20113647 intergenic not near genes chr3L_15_20110001 chr3L_20110001 RAL-361 2344 chr3L 20113617 20113675 chr3L 20122924 20122982 roo 32 9307 11.0 11.5 11.2 2.6 9365 chr3L 20113617 intergenic not near genes chr3L 20118300 intergenic not near genes chr3L 20122982 intergenic not near genes chr3L_32_20115001 chr3L_20115001 RAL-361 2345 chr3L 20127876 20127930 chr3L 20127981 20127990 5 103 19.0 22.0 20.5 0.2 114 chr3L 20127876 intergenic CG7365 - chr3L 20127933 intergenic not near genes chr3L 20127990 intergenic not near genes chr3L_5_20125001 chr3L_20125001 RAL-361 2346 chr3L 20143050 20143106 chr3L 20143180 20143236 13 130 32.5 33.5 33.0 0.4 186 chr3L 20143050 intergenic not near genes chr3L 20143143 intergenic not near genes chr3L 20143236 intergenic not near genes chr3L_13_20140001 chr3L_20140001 RAL-361 2347 chr3L 20212562 20212586 chr3L 20218189 20218213 mdg3 16 5627 17.5 6.0 11.8 1.2 5651 chr3L 20212562 intergenic CG7017 - chr3L 20215388 intergenic not near genes chr3L 20218213 intergenic CG6933 - chr3L_16_20215001 chr3L_20215001 RAL-361 2348 chr3L 20218182 20218219 chr3L 20218348 20218385 17 166 13.0 39.0 26.0 0.6 203 chr3L 20218182 intergenic CG6933 - chr3L 20218284 intergenic CG6933 - chr3L 20218385 intergenic CG6933 - chr3L_17_20215001 chr3L_20215001 RAL-361 2349 chr3L 20231046 20231104 chr3L 20231205 20231263 20 159 19.5 17.0 18.2 1.0 217 chr3L 20231046 intergenic not near genes chr3L 20231154 intergenic not near genes chr3L 20231263 intergenic CG13813 + chr3L_20_20230001 chr3L_20230001 RAL-361 2350 chr3L 20257287 20257356 chr3L 20258457 20258526 pogo 35 1170 13.0 11.0 12.0 2.7 1239 chr3L 20257287 intron rdgC + chr3L 20257906 intron rdgC + chr3L 20258526 intron rdgC + chr3L_35_20255001 chr3L_20255001 RAL-361 2351 chr3L 20283343 20283636 chr3L 20283473 20283770 13 131 23.0 24.5 23.8 0.5 427 chr3L 20283343 intron gogo - chr3L 20283556 intron gogo - chr3L 20283770 intron gogo - chr3L_13_20280001 chr3L_20280001 RAL-361 2352 chr3L 20283639 20283702 chr3L 20283773 20283836 25 131 17.5 17.0 17.2 1.4 197 chr3L 20283639 intron gogo - chr3L 20283738 intron gogo - chr3L 20283836 intron gogo - chr3L_25_20280001 chr3L_20280001 RAL-361 2353 chr3L 20344238 20344256 chr3L 20344378 20344396 INE-1 4 140 23.0 20.5 21.8 0.2 158 chr3L 20344238 3` UTR Spn77Bc + chr3L 20344317 3` UTR Spn77Bc + chr3L 20344396 intergenic Spn77Bc + chr3L_4_20340001 chr3L_20340001 RAL-361 2354 chr3L 20395116 20395183 chr3L 20395265 20395328 16 148 16.5 17.0 16.8 0.9 212 chr3L 20395116 intergenic CR45677 - chr3L 20395222 intergenic CR45677 - chr3L 20395328 intergenic CR45677 - chr3L_16_20395001 chr3L_20395001 RAL-361 2355 chr3L 20409840 20409907 chr3L 20409976 20410038 18 132 11.5 11.5 11.5 1.4 198 chr3L 20409840 intron CG13248 - chr3L 20409939 intron CG13248 - chr3L 20410038 intron CG13248 - chr3L_18_20405001 chr3L_20405001 RAL-361 2356 chr3L 20462539 20462568 chr3L 20462670 20462699 10 131 29.0 17.0 23.0 0.4 160 chr3L 20462539 intron atk - chr3L 20462619 intron atk - chr3L 20462699 intron atk - chr3L_10_20460001 chr3L_20460001 RAL-361 2357 chr3L 20476722 20476778 chr3L 20484371 20484386 springer 24 7647 8.5 12.0 10.2 2.1 7664 chr3L 20476722 3` UTR isoQC + chr3L 20480554 intergenic not near genes chr3L 20484386 3` UTR ZnT77C - chr3L_24_20480001 chr3L_20480001 RAL-361 2358 chr3L 20525228 20525228 chr3L 22908066 22908066 4 2382838 32.0 48.5 40.2 0.1 2382838 chr3L 20525228 intron CG4825 - chr3L 21716647 intergenic not near genes chr3L 22908066 intergenic not near genes chr3L_4_21715001 chr3L_21715001 RAL-361 2359 chr3L 20525228 20525228 chr3L 24821492 24821494 4 4296264 32.0 25.5 28.8 0.1 4296266 chr3L 20525228 intron CG4825 - chr3L 22673361 intron CG14457 + chr3L 24821494 intergenic not near genes chr3L_4_22670001 chr3L_22670001 RAL-361 2360 chr3L 20525229 20525229 chr3L 22908066 22908067 8 2382837 32.0 48.5 40.2 0.2 2382838 chr3L 20525229 intron CG4825 - chr3L 21716648 intergenic not near genes chr3L 22908067 intergenic not near genes chr3L_8_21715001 chr3L_21715001 RAL-361 2361 chr3L 20525229 20525229 chr3L 24821493 24821494 4 4296264 32.0 25.5 28.8 0.1 4296265 chr3L 20525229 intron CG4825 - chr3L 22673362 intron CG14457 + chr3L 24821494 intergenic not near genes chr3L_4_22670001 chr3L_22670001 RAL-361 2362 chr3L 20525230 20525230 chr3L 24821492 24821494 6 4296264 32.0 25.5 28.8 0.2 4296264 chr3L 20525230 intron CG4825 - chr3L 22673362 intron CG14457 + chr3L 24821494 intergenic not near genes chr3L_6_22670001 chr3L_22670001 RAL-361 2363 chr3L 20534823 20534875 chr3L 20535174 20535226 21 350 19.0 22.0 20.5 1.0 403 chr3L 20534823 intron,intron Rcd2 -,CG13250 + chr3L 20535024 intron,intron Rcd2 -,CG13250 + chr3L 20535226 intron,exon Rcd2 -,CG13250 + chr3L_21_20535001 chr3L_20535001 RAL-361 2364 chr3L 20536271 20536333 chr3L 20536392 20536464 11 126 24.5 27.0 25.8 0.4 193 chr3L 20536271 intron Rcd2 - chr3L 20536368 intron Rcd2 - chr3L 20536464 intron Rcd2 - chr3L_11_20535001 chr3L_20535001 RAL-361 2365 chr3L 20548315 20548379 chr3L 20548454 20548518 28 139 14.5 7.5 11.0 2.3 203 chr3L 20548315 intergenic not near genes chr3L 20548416 intergenic not near genes chr3L 20548518 intergenic not near genes chr3L_28_20545001 chr3L_20545001 RAL-361 2366 chr3L 20590021 20590089 chr3L 20590603 20590678 412 28 579 7.5 7.0 7.2 3.4 657 chr3L 20590021 intergenic not near genes chr3L 20590350 intergenic not near genes chr3L 20590678 intergenic not near genes chr3L_28_20590001 chr3L_20590001 RAL-361 2367 chr3L 20699864 20699924 chr3L 20699994 20700054 9 130 17.5 14.0 15.8 0.5 190 chr3L 20699864 intergenic not near genes chr3L 20699959 intergenic not near genes chr3L 20700054 intergenic not near genes chr3L_9_20695001 chr3L_20695001 RAL-361 2368 chr3L 20710716 20710788 chr3L 20710843 20710915 29 126 11.5 11.5 11.5 2.3 199 chr3L 20710716 intergenic not near genes chr3L 20710816 intergenic not near genes chr3L 20710915 intergenic not near genes chr3L_29_20710001 chr3L_20710001 RAL-361 2369 chr3L 20819655 20819715 chr3L 20819893 20819953 24 237 25.0 15.5 20.2 1.1 298 chr3L 20819655 intron Pka-R1 + chr3L 20819804 intron Pka-R1 + chr3L 20819953 intron Pka-R1 + chr3L_24_20815001 chr3L_20815001 RAL-361 2370 chr3L 20821243 20821304 chr3L 20824762 20824823 NOF 31 3518 10.5 12.5 11.5 2.5 3580 chr3L 20821243 intron Pka-R1 + chr3L 20823033 intron Pka-R1 + chr3L 20824823 intron Pka-R1 + chr3L_31_20820001 chr3L_20820001 RAL-361 2371 chr3L 20849225 20849290 chr3L 20849354 20849419 25 128 9.5 12.5 11.0 2.1 194 chr3L 20849225 intron CG32432 - chr3L 20849322 intron CG32432 - chr3L 20849419 intron CG32432 - chr3L_25_20845001 chr3L_20845001 RAL-361 2372 chr3L 20849678 20849742 chr3L 20850077 20850141 7 399 22.0 20.5 21.2 0.3 463 chr3L 20849678 intron CG32432 - chr3L 20849910 intron CG32432 - chr3L 20850141 intron CG32432 - chr3L_7_20845001 chr3L_20845001 RAL-361 2373 chr3L 20858030 20858097 chr3L 20858175 20858246 14 149 22.0 17.0 19.5 0.7 216 chr3L 20858030 intron CG32432 - chr3L 20858138 intron CG32432 - chr3L 20858246 intron CG32432 - chr3L_14_20855001 chr3L_20855001 RAL-361 2374 chr3L 20879937 20880013 chr3L 20880071 20880125 20 124 13.5 13.0 13.2 1.4 188 chr3L 20879937 intron CG32432 - chr3L 20880031 intron CG32432 - chr3L 20880125 intron CG32432 - chr3L_20_20880001 chr3L_20880001 RAL-361 2375 chr3L 20913704 20913776 chr3L 20913836 20913890 17 127 19.0 18.0 18.5 0.9 186 chr3L 20913704 3` UTR CR43930 - chr3L 20913797 intergenic CR43930 - chr3L 20913890 intergenic CR43930 - chr3L_17_20910001 chr3L_20910001 RAL-361 2376 chr3L 20986718 20986783 chr3L 20986846 20986880 23 121 19.5 20.0 19.8 1.1 162 chr3L 20986718 intergenic not near genes chr3L 20986799 intergenic not near genes chr3L 20986880 intergenic not near genes chr3L_23_20985001 chr3L_20985001 RAL-361 2377 chr3L 21014873 21014888 chr3L 21023404 21023413 Tirant 5 8530 25.5 12.0 18.8 0.3 8540 chr3L 21014873 intron skd - chr3L 21019143 intron skd - chr3L 21023413 intron skd - chr3L_5_21015001 chr3L_21015001 RAL-361 2378 chr3L 21014889 21014900 chr3L 21023400 21023409 Tirant 8 8522 22.0 10.5 16.2 0.5 8520 chr3L 21014889 intron skd - chr3L 21019149 intron skd - chr3L 21023409 intron skd - chr3L_8_21015001 chr3L_21015001 RAL-361 2379 chr3L 21014902 21014946 chr3L 21023397 21023456 Tirant 18 8513 8.0 10.5 9.2 1.8 8554 chr3L 21014902 intron skd - chr3L 21019179 intron skd - chr3L 21023456 intron skd - chr3L_18_21015001 chr3L_21015001 RAL-361 2380 chr3L 21082176 21082227 chr3L 21082304 21082355 17 127 25.0 29.0 27.0 0.6 179 chr3L 21082176 intron ko - chr3L 21082266 intron ko - chr3L 21082355 intron ko - chr3L_17_21080001 chr3L_21080001 RAL-361 2381 chr3L 21151822 21151878 chr3L 21156956 21157012 flea 29 5134 9.0 10.0 9.5 2.8 5190 chr3L 21151822 intron Ac78C - chr3L 21154417 intron Ac78C - chr3L 21157012 intron Ac78C - chr3L_29_21150001 chr3L_21150001 RAL-361 2382 chr3L 21158574 21158618 chr3L 21158690 21158744 16 124 27.5 30.0 28.8 0.5 170 chr3L 21158574 intron Ac78C - chr3L 21158659 intron Ac78C - chr3L 21158744 intron Ac78C - chr3L_16_21155001 chr3L_21155001 RAL-361 2383 chr3L 21172827 21172870 chr3L 21172980 21172997 8 146 16.0 20.5 18.2 0.4 170 chr3L 21172827 intergenic chb +,asparagine-synthetase + chr3L 21172912 5` UTR chb + chr3L 21172997 5` UTR chb + chr3L_8_21170001 chr3L_21170001 RAL-361 2384 chr3L 21243706 21243732 chr3L 21251319 21251323 412 5 7606 9.5 12.5 11.0 0.4 7617 chr3L 21243706 intron Eip78C + chr3L 21247514 intron Eip78C + chr3L 21251323 intron Eip78C + chr3L_5_21245001 chr3L_21245001 RAL-361 2385 chr3L 21256501 21256556 chr3L 21256630 21256680 12 140 19.5 20.5 20.0 0.6 179 chr3L 21256501 intron Eip78C + chr3L 21256590 intron Eip78C + chr3L 21256680 intron Eip78C + chr3L_12_21255001 chr3L_21255001 RAL-361 2386 chr3L 21306104 21306172 chr3L 21315313 21315381 roo 23 9208 7.0 11.5 9.2 2.3 9277 chr3L 21306104 3` UTR CG7632 + chr3L 21310742 intron Pc - chr3L 21315381 3` UTR Pc - chr3L_23_21310001 chr3L_21310001 RAL-361 2387 chr3L 21319484 21319554 chr3L 21319621 21319694 20 140 17.5 22.5 20.0 1.0 210 chr3L 21319484 5` UTR Rab26 + chr3L 21319589 5` UTR Rab26 + chr3L 21319694 5` UTR Rab26 + chr3L_20_21315001 chr3L_21315001 RAL-361 2388 chr3L 21321047 21321108 chr3L 21321228 21321289 15 179 33.5 27.0 30.2 0.5 242 chr3L 21321047 intron Rab26 + chr3L 21321168 intron Rab26 + chr3L 21321289 intron Rab26 + chr3L_15_21320001 chr3L_21320001 RAL-361 2389 chr3L 21344838 21344908 chr3L 21345031 21345101 14 193 31.5 32.0 31.8 0.4 263 chr3L 21344838 intron,3` UTR CG32436 +,ebd2 - chr3L 21344970 intron,3` UTR CG32436 +,ebd2 - chr3L 21345101 intron,exon CG32436 +,ebd2 - chr3L_14_21340001 chr3L_21340001 RAL-361 2390 chr3L 21372686 21372733 chr3L 21379244 21379291 McClintock 8 6558 22.0 26.0 24.0 0.3 6605 chr3L 21372686 intergenic not near genes chr3L 21375988 intergenic not near genes chr3L 21379291 intergenic not near genes chr3L_8_21375001 chr3L_21375001 RAL-361 2391 chr3L 21392386 21392435 chr3L 21393066 21393115 9 678 24.5 20.5 22.5 0.4 729 chr3L 21392386 intron rgn + chr3L 21392750 intron rgn + chr3L 21393115 intron rgn + chr3L_9_21390001 chr3L_21390001 RAL-361 2392 chr3L 21395100 21395175 chr3L 21395242 21395275 14 135 14.5 14.5 14.5 0.9 175 chr3L 21395100 intron rgn + chr3L 21395188 intron rgn + chr3L 21395275 intron rgn + chr3L_14_21395001 chr3L_21395001 RAL-361 2393 chr3L 21406951 21406987 chr3L 21407080 21407116 16 128 15.0 7.5 11.2 1.3 165 chr3L 21406951 intron rgn + chr3L 21407034 intron rgn + chr3L 21407116 intron rgn + chr3L_16_21405001 chr3L_21405001 RAL-361 2394 chr3L 21406989 21407028 chr3L 21407075 21407157 12 117 9.0 9.0 9.0 1.2 168 chr3L 21406989 intron rgn + chr3L 21407073 intron rgn + chr3L 21407157 intron rgn + chr3L_12_21405001 chr3L_21405001 RAL-361 2395 chr3L 21414485 21414541 chr3L 21414611 21414667 7 126 12.5 12.0 12.2 0.5 182 chr3L 21414485 intron rgn + chr3L 21414576 intron rgn + chr3L 21414667 intron rgn + chr3L_7_21410001 chr3L_21410001 RAL-361 2396 chr3L 21498827 21498842 chr3L 21500511 21500528 1360 6 1686 13.0 19.0 16.0 0.4 1701 chr3L 21498827 5` UTR,intron CR43933 +,Glg1 - chr3L 21499678 intron Glg1 - chr3L 21500528 intron Glg1 - chr3L_6_21495001 chr3L_21495001 RAL-361 2397 chr3L 21498844 21498850 chr3L 21500474 21500536 1360 4 1672 10.5 12.0 11.2 0.3 1692 chr3L 21498844 intron Glg1 - chr3L 21499690 intron Glg1 - chr3L 21500536 intron Glg1 - chr3L_4_21495001 chr3L_21495001 RAL-361 2398 chr3L 21564612 21564684 chr3L 21564827 21564899 32 215 26.0 17.0 21.5 1.4 287 chr3L 21564612 intergenic not near genes chr3L 21564756 intergenic not near genes chr3L 21564899 intergenic not near genes chr3L_32_21560001 chr3L_21560001 RAL-361 2399 chr3L 21593848 21593905 chr3L 21593975 21594031 10 127 27.0 27.5 27.2 0.4 183 chr3L 21593848 intron TfAP-2 + chr3L 21593940 intron TfAP-2 + chr3L 21594031 intron TfAP-2 + chr3L_10_21590001 chr3L_21590001 RAL-361 2400 chr3L 21749278 21749348 chr3L 21754482 21754517 Doc 12 5205 9.0 9.0 9.0 1.2 5239 chr3L 21749278 intron Syn1 - chr3L 21751898 intron Syn1 - chr3L 21754517 intron Syn1 - chr3L_12_21750001 chr3L_21750001 RAL-361 2401 chr3L 21767216 21767284 chr3L 21767413 21767451 15 189 34.0 25.5 29.8 0.5 235 chr3L 21767216 intron Syn1 - chr3L 21767334 intron Syn1 - chr3L 21767451 intron Syn1 - chr3L_15_21765001 chr3L_21765001 RAL-361 2402 chr3L 21769011 21769081 chr3L 21769148 21769210 27 137 9.5 10.0 9.8 2.5 199 chr3L 21769011 intron,intron Syn1 -,CG42689 + chr3L 21769110 intron,intron Syn1 -,CG42689 + chr3L 21769210 intron,intron Syn1 -,CG42689 + chr3L_27_21765001 chr3L_21765001 RAL-361 2403 chr3L 21769995 21770037 chr3L 21770132 21770173 10 130 12.0 5.5 8.8 1.0 178 chr3L 21769995 5` UTR,intron,5` UTR Syn1 -,CG42689 +,CG7370 + chr3L 21770084 5` UTR,intron,intron Syn1 -,CG42689 +,CG7370 + chr3L 21770173 5` UTR,intron,5` UTR Syn1 -,CG42689 +,CG7370 + chr3L_10_21770001 chr3L_21770001 RAL-361 2404 chr3L 21776635 21776697 chr3L 21776768 21776834 8 136 0.5 6.5 3.5 1.8 199 chr3L 21776635 intron,intron CG42689 +,CG42552 + chr3L 21776734 intron,intron CG42689 +,CG42552 + chr3L 21776834 exon,intron CG42689 +,CG42552 + chr3L_8_21775001 chr3L_21775001 RAL-361 2405 chr3L 21809941 21809964 chr3L 21810071 21810083 11 132 22.0 18.0 20.0 0.5 142 chr3L 21809941 intron eg + chr3L 21810012 intron eg + chr3L 21810083 intron eg + chr3L_11_21810001 chr3L_21810001 RAL-361 2406 chr3L 21821652 21821719 chr3L 21821825 21821892 17 173 15.5 17.0 16.2 1.0 240 chr3L 21821652 intergenic CycH + chr3L 21821772 intergenic CycH + chr3L 21821892 intergenic CycH + chr3L_17_21820001 chr3L_21820001 RAL-361 2407 chr3L 21840791 21840865 chr3L 21840965 21841039 15 174 28.5 25.0 26.8 0.5 248 chr3L 21840791 intron P5CDh1 - chr3L 21840915 intron P5CDh1 - chr3L 21841039 intron P5CDh1 - chr3L_15_21840001 chr3L_21840001 RAL-361 2408 chr3L 21847337 21847402 chr3L 21848320 21848385 13 983 27.5 29.5 28.5 0.4 1048 chr3L 21847337 intron mub + chr3L 21847861 intron mub + chr3L 21848385 intron mub + chr3L_13_21845001 chr3L_21845001 RAL-361 2409 chr3L 21849465 21849529 chr3L 21849597 21849661 29 132 20.0 25.0 22.5 1.2 196 chr3L 21849465 intron mub + chr3L 21849563 intron mub + chr3L 21849661 intron mub + chr3L_29_21845001 chr3L_21845001 RAL-361 2410 chr3L 21871520 21871539 chr3L 21871658 21871677 5 138 19.5 14.5 17.0 0.3 157 chr3L 21871520 intron mub + chr3L 21871598 intron mub + chr3L 21871677 intron mub + chr3L_5_21870001 chr3L_21870001 RAL-361 2411 chr3L 21871551 21871585 chr3L 21871648 21871723 9 132 17.5 14.5 16.0 0.5 172 chr3L 21871551 intron mub + chr3L 21871637 intron mub + chr3L 21871723 intron mub + chr3L_9_21870001 chr3L_21870001 RAL-361 2412 chr3L 21886343 21886359 chr3L 21886476 21886492 5 133 33.0 28.5 30.8 0.2 149 chr3L 21886343 intron,intron mub +,CR43878 - chr3L 21886418 intron,intron mub +,CR43878 - chr3L 21886492 intron,intron mub +,CR43878 - chr3L_5_21885001 chr3L_21885001 RAL-361 2413 chr3L 21886362 21886405 chr3L 21886474 21886538 17 130 29.5 28.0 28.8 0.6 176 chr3L 21886362 intron,intron mub +,CR43878 - chr3L 21886450 intron,intron mub +,CR43878 - chr3L 21886538 intron,intron mub +,CR43878 - chr3L_17_21885001 chr3L_21885001 RAL-361 2414 chr3L 21905301 21905512 chr3L 21905431 21905664 28 138 24.0 27.0 25.5 1.1 363 chr3L 21905301 intron mub + chr3L 21905482 intron mub + chr3L 21905664 intron mub + chr3L_28_21905001 chr3L_21905001 RAL-361 2415 chr3L 22001287 22001367 chr3L 22001416 22001486 11 121 27.0 23.5 25.2 0.4 199 chr3L 22001287 intergenic not near genes chr3L 22001386 intergenic not near genes chr3L 22001486 intergenic not near genes chr3L_11_22000001 chr3L_22000001 RAL-361 2416 chr3L 22058251 22058319 chr3L 22058578 22058646 18 326 30.5 29.0 29.8 0.6 395 chr3L 22058251 intron Oct-TyrR + chr3L 22058448 intron Oct-TyrR + chr3L 22058646 intron Oct-TyrR + chr3L_18_22055001 chr3L_22055001 RAL-361 2417 chr3L 22092764 22092826 chr3L 22092915 22092977 19 150 20.0 20.5 20.2 0.9 213 chr3L 22092764 intergenic not near genes chr3L 22092870 intergenic not near genes chr3L 22092977 intergenic not near genes chr3L_19_22090001 chr3L_22090001 RAL-361 2418 chr3L 22099635 22099695 chr3L 22105871 22105931 3S18 32 6236 9.0 12.0 10.5 2.8 6296 chr3L 22099635 intergenic not near genes chr3L 22102783 intergenic not near genes chr3L 22105931 intergenic not near genes chr3L_32_22100001 chr3L_22100001 RAL-361 2419 chr3L 22106558 22106562 chr3L 22106686 22106700 4 134 22.0 13.0 17.5 0.2 142 chr3L 22106558 intergenic not near genes chr3L 22106629 intergenic not near genes chr3L 22106700 intergenic not near genes chr3L_4_22105001 chr3L_22105001 RAL-361 2420 chr3L 22130456 22130518 chr3L 22130652 22130714 20 196 8.0 9.0 8.5 2.1 258 chr3L 22130456 intergenic not near genes chr3L 22130585 intergenic not near genes chr3L 22130714 intergenic not near genes chr3L_20_22130001 chr3L_22130001 RAL-361 2421 chr3L 22164628 22164695 chr3L 22164754 22164799 18 120 14.0 14.0 14.0 1.2 171 chr3L 22164628 intron olf413 + chr3L 22164714 intron olf413 + chr3L 22164799 intron olf413 + chr3L_18_22160001 chr3L_22160001 RAL-361 2422 chr3L 22169421 22169482 chr3L 22169564 22169625 10 143 26.5 27.0 26.8 0.4 204 chr3L 22169421 intron olf413 + chr3L 22169523 intron olf413 + chr3L 22169625 intron olf413 + chr3L_10_22165001 chr3L_22165001 RAL-361 2423 chr3L 22183492 22183556 chr3L 22183628 22183692 18 136 21.0 21.0 21.0 0.8 200 chr3L 22183492 intron olf413 + chr3L 22183592 intron olf413 + chr3L 22183692 intron olf413 + chr3L_18_22180001 chr3L_22180001 RAL-361 2424 chr3L 22271095 22271154 chr3L 22271272 22271331 14 175 22.5 32.0 27.2 0.5 236 chr3L 22271095 intron Csp + chr3L 22271213 intron Csp + chr3L 22271331 intron Csp + chr3L_14_22270001 chr3L_22270001 RAL-361 2425 chr3L 22275600 22275659 chr3L 22275845 22275904 18 245 26.5 27.5 27.0 0.6 304 chr3L 22275600 intron srpk79D + chr3L 22275752 intron srpk79D + chr3L 22275904 intron srpk79D + chr3L_18_22275001 chr3L_22275001 RAL-361 2426 chr3L 22314836 22314910 chr3L 22315100 22315169 25 262 8.5 5.5 7.0 3.1 333 chr3L 22314836 intron Ten-m - chr3L 22315002 intron Ten-m - chr3L 22315169 intron Ten-m - chr3L_25_22315001 chr3L_22315001 RAL-361 2427 chr3L 22328598 22328662 chr3L 22328759 22328823 8 159 25.5 26.0 25.8 0.3 225 chr3L 22328598 intron Ten-m - chr3L 22328710 intron Ten-m - chr3L 22328823 intron Ten-m - chr3L_8_22325001 chr3L_22325001 RAL-361 2428 chr3L 22447154 22447164 chr3L 22447295 22447305 4 141 19.5 8.5 14.0 0.3 151 chr3L 22447154 intergenic not near genes chr3L 22447230 intergenic not near genes chr3L 22447305 intergenic not near genes chr3L_4_22445001 chr3L_22445001 RAL-361 2429 chr3L 22447166 22447230 chr3L 22447290 22447317 29 137 8.0 7.0 7.5 3.4 151 chr3L 22447166 intergenic not near genes chr3L 22447242 intergenic not near genes chr3L 22447317 intergenic not near genes chr3L_29_22445001 chr3L_22445001 RAL-361 2430 chr3L 22477003 22477084 chr3L 22477144 22477225 21 139 0.5 8.0 4.2 4.0 222 chr3L 22477003 intergenic not near genes chr3L 22477114 intergenic not near genes chr3L 22477225 intergenic not near genes chr3L_21_22475001 chr3L_22475001 RAL-361 2431 chr3L 22491418 22491479 chr3L 22491692 22491753 INE-1 22 274 23.5 15.5 19.5 1.1 335 chr3L 22491418 intergenic not near genes chr3L 22491586 intergenic not near genes chr3L 22491753 intergenic not near genes chr3L_22_22490001 chr3L_22490001 RAL-361 2432 chr3L 22497370 22497422 chr3L 22497504 22497556 14 149 9.0 13.5 11.2 1.1 186 chr3L 22497370 intergenic CR45430 - chr3L 22497463 intergenic CR45430 - chr3L 22497556 intergenic CR45430 - chr3L_14_22495001 chr3L_22495001 RAL-361 2433 chr3L 22512969 22513040 chr3L 22513106 22513177 13 137 26.0 26.5 26.2 0.5 208 chr3L 22512969 intergenic not near genes chr3L 22513073 intergenic not near genes chr3L 22513177 intergenic not near genes chr3L_13_22510001 chr3L_22510001 RAL-361 2434 chr3L 22514721 22514781 chr3L 22514938 22514998 8 216 30.0 26.0 28.0 0.3 277 chr3L 22514721 intergenic not near genes chr3L 22514860 intergenic not near genes chr3L 22514998 intergenic not near genes chr3L_8_22510001 chr3L_22510001 RAL-361 2435 chr3L 22522651 22522723 chr3L 22522778 22522850 23 127 16.5 15.5 16.0 1.4 199 chr3L 22522651 intergenic not near genes chr3L 22522750 intergenic not near genes chr3L 22522850 intergenic not near genes chr3L_23_22520001 chr3L_22520001 RAL-361 2436 chr3L 22527224 22527276 chr3L 22527421 22527473 11 193 14.5 14.5 14.5 0.7 249 chr3L 22527224 intergenic not near genes chr3L 22527348 intergenic not near genes chr3L 22527473 intergenic not near genes chr3L_11_22525001 chr3L_22525001 RAL-361 2437 chr3L 22554379 22554450 chr3L 22554505 22554576 31 126 23.5 22.0 22.8 1.3 197 chr3L 22554379 intergenic not near genes chr3L 22554478 intergenic not near genes chr3L 22554576 intergenic not near genes chr3L_31_22550001 chr3L_22550001 RAL-361 2438 chr3L 22555725 22555789 chr3L 22563245 22563279 blood 23 7515 6.0 5.5 5.8 3.4 7554 chr3L 22555725 intergenic not near genes chr3L 22559502 intergenic not near genes chr3L 22563279 intergenic not near genes chr3L_23_22555001 chr3L_22555001 RAL-361 2439 chr3L 22569535 22569597 chr3L 22569683 22569745 12 148 12.5 19.0 15.8 0.7 210 chr3L 22569535 intergenic not near genes chr3L 22569640 intergenic not near genes chr3L 22569745 intergenic not near genes chr3L_12_22565001 chr3L_22565001 RAL-361 2440 chr3L 22577578 22577628 chr3L 22582416 22582465 Doc 19 4835 8.0 7.5 7.8 2.2 4887 chr3L 22577578 intergenic not near genes chr3L 22580022 intergenic not near genes chr3L 22582465 3` UTR CG14459 - chr3L_19_22580001 chr3L_22580001 RAL-361 2441 chr3L 22617148 22617211 chr3L 22624650 22624713 blood 27 7502 8.0 9.5 8.8 2.8 7565 chr3L 22617148 intron CG14459 - chr3L 22620930 intron CG14459 - chr3L 22624713 intron CG14459 - chr3L_27_22620001 chr3L_22620001 RAL-361 2442 chr3L 22639846 22639899 chr3L 22640054 22640107 18 209 51.5 45.5 48.5 0.4 261 chr3L 22639846 intergenic not near genes chr3L 22639976 intergenic not near genes chr3L 22640107 intergenic not near genes chr3L_18_22635001 chr3L_22635001 RAL-361 2443 chr3L 22678042 22678097 chr3L 22678171 22678240 28 134 6.0 9.5 7.8 3.2 198 chr3L 22678042 intron CG14457 + chr3L 22678141 intron CG14457 + chr3L 22678240 intron CG14457 + chr3L_28_22675001 chr3L_22675001 RAL-361 2444 chr3L 22731842 22731862 chr3L 22731972 22731992 6 130 23.5 20.0 21.8 0.3 150 chr3L 22731842 intron CG11367 + chr3L 22731917 intron CG11367 + chr3L 22731992 intron CG11367 + chr3L_6_22730001 chr3L_22730001 RAL-361 2445 chr3L 22732440 22732489 chr3L 22732571 22732620 10 131 31.0 35.0 33.0 0.3 180 chr3L 22732440 intron CG11367 + chr3L 22732530 intron CG11367 + chr3L 22732620 exon CG11367 + chr3L_10_22730001 chr3L_22730001 RAL-361 2446 chr3L 22747627 22747648 chr3L 22747734 22747755 7 119 22.0 20.0 21.0 0.3 128 chr3L 22747627 exon CG7369 + chr3L 22747691 exon CG7369 + chr3L 22747755 3` UTR CG7369 + chr3L_7_22745001 chr3L_22745001 RAL-361 2447 chr3L 22761345 22761400 chr3L 22766829 22766884 Ivk 19 5484 6.5 9.0 7.8 2.2 5539 chr3L 22761345 intron SPoCk + chr3L 22764114 intron SPoCk + chr3L 22766884 intron SPoCk + chr3L_19_22760001 chr3L_22760001 RAL-361 2448 chr3L 22833229 22833261 chr3L 22833358 22833390 6 126 37.5 38.0 37.8 0.2 161 chr3L 22833229 5` UTR jim - chr3L 22833310 5` UTR jim - chr3L 22833390 5` UTR jim - chr3L_6_22830001 chr3L_22830001 RAL-361 2449 chr3L 22848726 22848792 chr3L 22848941 22849007 14 214 27.5 27.5 27.5 0.5 281 chr3L 22848726 intergenic not near genes chr3L 22848866 intergenic not near genes chr3L 22849007 intergenic not near genes chr3L_14_22845001 chr3L_22845001 RAL-361 2450 chr3L 22849412 22849429 chr3L 22849547 22849564 5 135 33.5 38.5 36.0 0.1 152 chr3L 22849412 intergenic not near genes chr3L 22849488 intergenic not near genes chr3L 22849564 intergenic not near genes chr3L_5_22845001 chr3L_22845001 RAL-361 2451 chr3L 22853648 22853721 chr3L 22853784 22853857 24 133 19.5 24.5 22.0 1.0 209 chr3L 22853648 5` UTR CR43426 + chr3L 22853752 5` UTR CR43426 + chr3L 22853857 5` UTR CR43426 + chr3L_24_22850001 chr3L_22850001 RAL-361 2452 chr3L 22865941 22866002 chr3L 22867124 22867185 Doc 21 1182 13.0 12.5 12.8 1.5 1244 chr3L 22865941 exon CG33170 + chr3L 22866563 intron CG33170 + chr3L 22867185 intron CG33170 + chr3L_21_22865001 chr3L_22865001 RAL-361 2453 chr3L 22897179 22897224 chr3L 22897305 22897309 19 128 1.0 15.5 8.2 2.1 130 chr3L 22897179 intergenic not near genes chr3L 22897244 intergenic not near genes chr3L 22897309 intergenic not near genes chr3L_19_22895001 chr3L_22895001 RAL-361 2454 chr3L 19220633 19220637 chr3L 22908066 22908066 13 3687431 37.5 48.5 43.0 0.3 3687433 chr3L 19220633 intron fz2 - chr3L 21064350 intron siz + chr3L 22908066 intergenic not near genes chr3L_13_21060001 chr3L_21060001 RAL-361 2455 chr3L 20525228 20525232 chr3L 22908066 22908066 23 2382837 32.0 48.5 40.2 0.6 2382838 chr3L 20525228 intron CG4825 - chr3L 21716647 intergenic not near genes chr3L 22908066 intergenic not near genes chr3L_23_21715001 chr3L_21715001 RAL-361 2456 chr3L 22908066 22908066 chr3L 24821492 24821495 18 1913428 51.5 25.5 38.5 0.5 1913429 chr3L 22908066 intergenic not near genes chr3L 23864780 intron CG40470 - chr3L 24821495 intergenic not near genes chr3L_18_23860001 chr3L_23860001 RAL-361 2457 chr3L 19220633 19220636 chr3L 22908067 22908067 9 3687432 38.5 48.0 43.2 0.2 3687434 chr3L 19220633 intron fz2 - chr3L 21064350 intron siz + chr3L 22908067 intergenic not near genes chr3L_9_21060001 chr3L_21060001 RAL-361 2458 chr3L 20525228 20525230 chr3L 22908067 22908067 9 2382837 32.0 48.0 40.0 0.2 2382839 chr3L 20525228 intron CG4825 - chr3L 21716648 intergenic not near genes chr3L 22908067 intergenic not near genes chr3L_9_21715001 chr3L_21715001 RAL-361 2459 chr3L 22908067 22908067 chr3L 24821492 24821496 10 1913427 52.0 25.5 38.8 0.3 1913429 chr3L 22908067 intergenic not near genes chr3L 23864782 intron CG40470 - chr3L 24821496 intergenic not near genes chr3L_10_23860001 chr3L_23860001 RAL-361 2460 chr3L 22908977 22909044 chr3L 22909118 22909185 15 140 15.5 21.0 18.2 0.8 208 chr3L 22908977 intergenic CR45661 + chr3L 22909081 intergenic CR45661 + chr3L 22909185 intergenic CR45661 + chr3L_15_22905001 chr3L_22905001 RAL-361 2461 chr3L 22949151 22949217 chr3L 22949289 22949355 37 138 8.5 8.0 8.2 4.0 204 chr3L 22949151 intron Mes2 + chr3L 22949253 intron Mes2 + chr3L 22949355 intron Mes2 + chr3L_37_22945001 chr3L_22945001 RAL-361 2462 chr3L 22966392 22966438 chr3L 22966662 22966694 11 266 24.5 24.0 24.2 0.4 302 chr3L 22966392 intergenic not near genes chr3L 22966543 intergenic not near genes chr3L 22966694 intergenic not near genes chr3L_11_22965001 chr3L_22965001 RAL-361 2463 chr3L 22989829 22989882 chr3L 22996843 22996906 297 22 7022 10.0 11.5 10.8 1.9 7077 chr3L 22989829 intergenic not near genes chr3L 22993368 intergenic not near genes chr3L 22996906 intergenic not near genes chr3L_22_22990001 chr3L_22990001 RAL-361 2464 chr3L 23088244 23088315 chr3L 23088376 23088447 11 129 19.5 21.0 20.2 0.5 203 chr3L 23088244 intergenic not near genes chr3L 23088346 intergenic not near genes chr3L 23088447 intergenic not near genes chr3L_11_23085001 chr3L_23085001 RAL-361 2465 chr3L 23125989 23126048 chr3L 23126137 23126196 10 147 12.0 11.0 11.5 0.8 207 chr3L 23125989 intergenic CG33217 + chr3L 23126092 5` UTR CG33217 + chr3L 23126196 intron CG33217 + chr3L_10_23125001 chr3L_23125001 RAL-361 2466 chr3L 23165870 23165903 chr3L 23173362 23173397 Quasimodo 8 7495 8.5 9.5 9.0 0.8 7527 chr3L 23165870 intergenic not near genes chr3L 23169634 intergenic not near genes chr3L 23173397 intergenic not near genes chr3L_8_23165001 chr3L_23165001 RAL-361 2467 chr3L 23182803 23182837 chr3L 23182904 23182963 6 119 19.5 19.5 19.5 0.3 160 chr3L 23182803 intron CG34031 + chr3L 23182883 intron CG34031 + chr3L 23182963 intron CG34031 + chr3L_6_23180001 chr3L_23180001 RAL-361 2468 chr3L 23205405 23205445 chr3L 23205685 23205725 9 280 22.5 21.5 22.0 0.4 320 chr3L 23205405 intergenic not near genes chr3L 23205565 intergenic not near genes chr3L 23205725 intergenic not near genes chr3L_9_23205001 chr3L_23205001 RAL-361 2469 chr3L 23255104 23255126 chr3L 23255293 23255315 5 189 18.5 12.5 15.5 0.3 211 chr3L 23255104 intron nAChRalpha4 + chr3L 23255210 intron nAChRalpha4 + chr3L 23255315 intron nAChRalpha4 + chr3L_5_23255001 chr3L_23255001 RAL-361 2470 chr3L 23255129 23255173 chr3L 23255288 23255299 7 171 12.0 12.5 12.2 0.5 170 chr3L 23255129 intron nAChRalpha4 + chr3L 23255214 intron nAChRalpha4 + chr3L 23255299 intron nAChRalpha4 + chr3L_7_23255001 chr3L_23255001 RAL-361 2471 chr3L 23277211 23277223 chr3L 23277347 23277359 4 136 5.5 11.0 8.2 0.4 148 chr3L 23277211 intron nAChRalpha4 + chr3L 23277285 intron nAChRalpha4 + chr3L 23277359 intron nAChRalpha4 + chr3L_4_23275001 chr3L_23275001 RAL-361 2472 chr3L 23285597 23285648 chr3L 23286304 23286378 7 727 15.5 25.0 20.2 0.3 781 chr3L 23285597 3` UTR nAChRalpha4 + chr3L 23285988 3` UTR nAChRalpha4 + chr3L 23286378 3` UTR nAChRalpha4 + chr3L_7_23285001 chr3L_23285001 RAL-361 2473 chr3L 23288236 23288296 chr3L 23288965 23289025 INE-1 15 728 32.0 28.5 30.2 0.5 789 chr3L 23288236 intergenic not near genes chr3L 23288630 intergenic not near genes chr3L 23289025 intergenic not near genes chr3L_15_23285001 chr3L_23285001 RAL-361 2474 chr3L 23450085 23450108 chr3L 23450610 23450660 6 540 27.0 18.0 22.5 0.3 575 chr3L 23450085 intergenic not near genes chr3L 23450372 intergenic not near genes chr3L 23450660 intergenic not near genes chr3L_6_23450001 chr3L_23450001 RAL-361 2475 chr3L 23470367 23470391 chr3L 23470662 23470695 7 301 12.0 19.5 15.8 0.4 328 chr3L 23470367 intergenic not near genes chr3L 23470531 intergenic not near genes chr3L 23470695 intergenic not near genes chr3L_7_23470001 chr3L_23470001 RAL-361 2476 chr3L 23665484 23665512 chr3L 23665624 23665650 gypsy8 5 140 45.0 42.5 43.8 0.1 166 chr3L 23665484 intron AGO3 + chr3L 23665567 intron AGO3 + chr3L 23665650 intron AGO3 + chr3L_5_23665001 chr3L_23665001 RAL-361 2477 chr3L 23666264 23666307 chr3L 23666405 23666447 10 146 28.5 41.0 34.8 0.3 183 chr3L 23666264 intron AGO3 + chr3L 23666356 intron AGO3 + chr3L 23666447 intron AGO3 + chr3L_10_23665001 chr3L_23665001 RAL-361 2478 chr3L 23875489 23875547 chr3L 23875611 23875645 15 125 9.0 6.5 7.8 1.7 156 chr3L 23875489 intron CG40470 - chr3L 23875567 intron CG40470 - chr3L 23875645 intron CG40470 - chr3L_15_23875001 chr3L_23875001 RAL-361 2479 chr3L 24012366 24012428 chr3L 24020757 24020819 roo 19 8389 12.5 10.0 11.2 1.6 8453 chr3L 24012366 intergenic not near genes chr3L 24016592 intergenic not near genes chr3L 24020819 intergenic not near genes chr3L_19_24015001 chr3L_24015001 RAL-361 2480 chr3L 24168786 24168817 chr3L 24176123 24176194 ZAM 7 7367 6.5 7.0 6.8 0.9 7408 chr3L 24168786 intron Snap25 + chr3L 24172490 intron Snap25 + chr3L 24176194 intron Snap25 + chr3L_7_24170001 chr3L_24170001 RAL-361 2481 chr3L 24233770 24233800 chr3L 24233898 24233928 4 128 13.5 9.5 11.5 0.3 158 chr3L 24233770 intron Snap25 + chr3L 24233849 intron Snap25 + chr3L 24233928 intron Snap25 + chr3L_4_24230001 chr3L_24230001 RAL-361 2482 chr3L 24303996 24304010 chr3L 24304149 24304163 4 153 16.0 16.5 16.2 0.2 167 chr3L 24303996 intergenic not near genes chr3L 24304080 intergenic not near genes chr3L 24304163 intergenic not near genes chr3L_4_24300001 chr3L_24300001 RAL-361 2483 chr3L 24791829 24791884 chr3L 24796676 24796713 Doc 14 4834 9.0 5.0 7.0 1.8 4884 chr3L 24791829 intergenic not near genes chr3L 24794271 intergenic not near genes chr3L 24796713 intergenic not near genes chr3L_14_24790001 chr3L_24790001 RAL-361 2484 chr3L 18198930 18198930 chr3L 24821492 24821492 4 6622562 1.0 25.5 13.2 0.3 6622562 chr3L 18198930 intergenic not near genes chr3L 21510211 intron M6 + chr3L 24821492 intergenic not near genes chr3L_4_21510001 chr3L_21510001 RAL-361 2485 chr3L 20525228 20525230 chr3L 24821492 24821492 7 4296263 32.0 25.5 28.8 0.2 4296264 chr3L 20525228 intron CG4825 - chr3L 22673360 intron CG14457 + chr3L 24821492 intergenic not near genes chr3L_7_22670001 chr3L_22670001 RAL-361 2486 chr3L 18198931 18198931 chr3L 24821493 24821493 5 6622562 0.5 25.5 13.0 0.4 6622562 chr3L 18198931 intergenic not near genes chr3L 21510212 intron M6 + chr3L 24821493 intergenic not near genes chr3L_5_21510001 chr3L_21510001 RAL-361 2487 chr3L 20525229 20525229 chr3L 24821493 24821494 7 4296264 32.0 25.5 28.8 0.2 4296265 chr3L 20525229 intron CG4825 - chr3L 22673362 intron CG14457 + chr3L 24821494 intergenic not near genes chr3L_7_22670001 chr3L_22670001 RAL-361 2488 chr3L 25106540 25106602 chr3L 25106677 25106739 15 137 33.5 31.5 32.5 0.4 199 chr3L 25106540 intergenic not near genes chr3L 25106640 intergenic not near genes chr3L 25106739 intergenic not near genes chr3L_15_25105001 chr3L_25105001 RAL-361 2489 chr3L 25331601 25331652 chr3L 25331726 25331779 8 123 3.0 4.5 3.8 1.7 178 chr3L 25331601 intergenic not near genes chr3L 25331690 intergenic not near genes chr3L 25331779 intergenic not near genes chr3L_8_25330001 chr3L_25330001 RAL-361 2490 chr3L 25513539 25513586 chr3L 25513668 25513715 5 129 21.5 20.0 20.8 0.2 176 chr3L 25513539 intron CG41343 - chr3L 25513627 intron CG41343 - chr3L 25513715 intron CG41343 - chr3L_5_25510001 chr3L_25510001 RAL-361 2491 chr3L 25514828 25514849 chr3L 25514970 25514975 6 139 13.5 13.5 13.5 0.4 147 chr3L 25514828 intron CG41343 - chr3L 25514902 intron CG41343 - chr3L 25514975 intron CG41343 - chr3L_6_25510001 chr3L_25510001 RAL-361 2492 chr3L 25628459 25628512 chr3L 25633280 25633333 F-element 6 4819 17.0 7.5 12.2 0.5 4874 chr3L 25628459 intron CG41343 - chr3L 25630896 intron CG41343 - chr3L 25633333 intron CG41343 - chr3L_6_25630001 chr3L_25630001 RAL-361 2493 chr3L 23289004 23289073 chr3L 25843635 25843704 15 2554631 51.5 42.0 46.8 0.3 2554700 chr3L 23289004 intergenic not near genes chr3L 24566354 intergenic not near genes chr3L 25843704 intron CG40178 - chr3L_15_24565001 chr3L_24565001 RAL-361 2494 chr3L 25886867 25886879 chr3L 25887320 25887332 4 453 22.5 37.5 30.0 0.1 465 chr3L 25886867 intron CG40178 - chr3L 25887100 intron CG40178 - chr3L 25887332 intron CG40178 - chr3L_4_25885001 chr3L_25885001 RAL-361 2495 chr3L 26008738 26008790 chr3L 26008935 26008987 13 197 11.0 12.5 11.8 1.0 249 chr3L 26008738 intron CG40178 - chr3L 26008862 intron CG40178 - chr3L 26008987 intron CG40178 - chr3L_13_26005001 chr3L_26005001 RAL-361 2496 chr3L 26009379 26009415 chr3L 26009520 26009556 6 138 27.5 27.0 27.2 0.2 177 chr3L 26009379 intron CG40178 - chr3L 26009468 intron CG40178 - chr3L 26009556 intron CG40178 - chr3L_6_26005001 chr3L_26005001 RAL-361 2497 chr3L 26694909 26694944 chr3L 26695039 26695069 6 129 11.5 13.5 12.5 0.4 160 chr3L 26694909 intergenic not near genes chr3L 26694989 intergenic not near genes chr3L 26695069 intergenic not near genes chr3L_6_26690001 chr3L_26690001 RAL-361 2498 chr3L 23941236 23941239 chr3L 26882295 26882298 1360 4 2941059 32.0 1.5 16.8 0.2 2941062 chr3L 23941236 intron CG40470 - chr3L 25411767 intergenic not near genes chr3L 26882298 intergenic not near genes chr3L_4_25410001 chr3L_25410001 RAL-361 2499 chr3L 27167904 27167974 chr3L 27168074 27168144 13 168 31.0 28.0 29.5 0.4 240 chr3L 27167904 intergenic not near genes chr3L 27168024 intergenic not near genes chr3L 27168144 intergenic not near genes chr3L_13_27165001 chr3L_27165001 RAL-361 2500 chr3L 27356066 27356113 chr3L 27357315 27357317 1360 5 1236 30.5 20.5 25.5 0.2 1251 chr3L 27356066 intron Dbp80 + chr3L 27356692 intron Dbp80 + chr3L 27357317 intron Dbp80 + chr3L_5_27355001 chr3L_27355001 RAL-361 2501 chr3L 27365349 27365390 chr3L 27365710 27365754 11 357 16.0 17.0 16.5 0.6 405 chr3L 27365349 intron Dbp80 + chr3L 27365552 intron Dbp80 + chr3L 27365754 intron Dbp80 + chr3L_11_27365001 chr3L_27365001 RAL-361 2502 chr3L 27368847 27368895 chr3L 27369439 27369491 5 595 17.0 19.0 18.0 0.3 644 chr3L 27368847 intron Dbp80 + chr3L 27369169 intron Dbp80 + chr3L 27369491 intron Dbp80 + chr3L_5_27365001 chr3L_27365001 RAL-361 2503 chr3L 27390638 27390712 chr3L 27390767 27390841 17 129 42.5 44.5 43.5 0.4 203 chr3L 27390638 intron Dbp80 + chr3L 27390740 intron Dbp80 + chr3L 27390841 intron Dbp80 + chr3L_17_27390001 chr3L_27390001 RAL-361 2504 chr3L 27967531 27967594 chr3L 27971646 27971708 6 4118 39.0 32.5 35.8 0.2 4177 chr3L 27967531 exon CG17514 - chr3L 27969620 exon CG17514 - chr3L 27971708 exon CG17514 - chr3L_6_27965001 chr3L_27965001 RAL-361 2505 chr3L 27972679 27972831 chr3L 27972821 27972959 13 138 20.5 20.5 20.5 0.6 280 chr3L 27972679 exon CG17514 - chr3L 27972819 exon CG17514 - chr3L 27972959 exon CG17514 - chr3L_13_27970001 chr3L_27970001 RAL-361 2506 chr3L 27971584 27971646 chr3L 27972864 27972962 7 1296 30.5 19.5 25.0 0.3 1378 chr3L 27971584 exon CG17514 - chr3L 27972273 exon CG17514 - chr3L 27972962 exon CG17514 - chr3L_7_27970001 chr3L_27970001 RAL-361 2507 chr3L 27980646 27980684 chr3L 27985494 27985532 Doc 5 4848 31.0 7.0 19.0 0.2 4886 chr3L 27980646 intron CG17514 - chr3L 27983089 intron CG17514 - chr3L 27985532 intron CG17514 - chr3L_5_27980001 chr3L_27980001 RAL-361 2508 chr3R 1021766 1021839 chr3R 1021990 1022043 8 207 26.0 25.0 25.5 0.3 277 chr3R 1021766 intergenic not near genes chr3R 1021904 intergenic not near genes chr3R 1022043 intergenic not near genes chr3R_8_1020001 chr3R_1020001 RAL-361 2509 chr3R 1062342 1062400 chr3R 1062550 1062608 7 208 14.0 12.0 13.0 0.5 266 chr3R 1062342 intron CG15831 + chr3R 1062475 intron CG15831 + chr3R 1062608 intron CG15831 + chr3R_7_1060001 chr3R_1060001 RAL-361 2510 chr3R 1443438 1443461 chr3R 1443568 1443591 4 130 13.0 17.0 15.0 0.2 153 chr3R 1443438 intron CG40155 + chr3R 1443514 intron CG40155 + chr3R 1443591 intron CG40155 + chr3R_4_1440001 chr3R_1440001 RAL-361 2511 chr3R 1679173 1679177 chr3R 1878224 1878228 Cr1a 4 199051 12.0 15.5 13.8 0.3 199055 chr3R 1679173 intergenic not near genes chr3R 1778700 intergenic not near genes chr3R 1878228 intron CG42623 + chr3R_4_1775001 chr3R_1775001 RAL-361 2512 chr3R 1939026 1939074 chr3R 1939170 1939218 5 144 12.5 13.5 13.0 0.4 192 chr3R 1939026 intergenic not near genes chr3R 1939122 intergenic not near genes chr3R 1939218 intergenic not near genes chr3R_5_1935001 chr3R_1935001 RAL-361 2513 chr3R 2446807 2446855 chr3R 2449006 2449054 1360 6 2201 63.5 86.5 75.0 0.1 2247 chr3R 2446807 intergenic not near genes chr3R 2447930 intergenic not near genes chr3R 2449054 intergenic not near genes chr3R_6_2445001 chr3R_2445001 RAL-361 2514 chr3R 2534098 2534155 chr3R 2541717 2541774 8 7617 15.0 21.0 18.0 0.4 7676 chr3R 2534098 intergenic not near genes chr3R 2537936 intergenic not near genes chr3R 2541774 intergenic not near genes chr3R_8_2535001 chr3R_2535001 RAL-361 2515 chr3R 2556899 2556950 chr3R 2557582 2557633 4 683 21.0 15.5 18.2 0.2 734 chr3R 2556899 intron CG41056 - chr3R 2557266 intron CG41056 - chr3R 2557633 intron CG41056 - chr3R_4_2555001 chr3R_2555001 RAL-361 2516 chr3R 2998785 2998839 chr3R 2998917 2998971 10 132 6.0 10.0 8.0 1.1 186 chr3R 2998785 intron CG42618 - chr3R 2998878 intron CG42618 - chr3R 2998971 intron CG42618 - chr3R_10_2995001 chr3R_2995001 RAL-361 2517 chr3R 3267250 3267324 chr3R 3267382 3267455 10 135 33.5 36.5 35.0 0.3 205 chr3R 3267250 intergenic not near genes chr3R 3267352 intergenic not near genes chr3R 3267455 intergenic not near genes chr3R_10_3265001 chr3R_3265001 RAL-361 2518 chr3R 3578419 3578461 chr3R 3578652 3578694 roo 13 233 16.5 22.5 19.5 0.6 275 chr3R 3578419 intron Parp - chr3R 3578556 intron Parp - chr3R 3578694 intron Parp - chr3R_13_3575001 chr3R_3575001 RAL-361 2519 chr3R 3752695 3752759 chr3R 3752828 3752837 14 122 37.0 34.0 35.5 0.4 142 chr3R 3752695 intergenic CG41128 + chr3R 3752766 intergenic CG41128 + chr3R 3752837 intergenic CG41128 + chr3R_14_3750001 chr3R_3750001 RAL-361 2520 chr3R 4063769 4063798 chr3R 4069099 4069107 9 5326 11.0 17.5 14.2 0.6 5338 chr3R 4063769 intergenic not near genes chr3R 4066438 intergenic not near genes chr3R 4069107 intergenic not near genes chr3R_9_4065001 chr3R_4065001 RAL-361 2521 chr3R 4105000 4105053 chr3R 4110254 4110307 copia 10 5254 6.0 4.0 5.0 1.7 5307 chr3R 4105000 intergenic not near genes chr3R 4107654 intergenic not near genes chr3R 4110307 intergenic not near genes chr3R_10_4105001 chr3R_4105001 RAL-361 2522 chr3R 4132852 4132922 chr3R 4133056 4133126 16 204 17.0 18.0 17.5 0.9 274 chr3R 4132852 intron Gfat1 + chr3R 4132989 intron Gfat1 + chr3R 4133126 intron Gfat1 + chr3R_16_4130001 chr3R_4130001 RAL-361 2523 chr3R 4206026 4206095 chr3R 4211651 4211720 mdg3 27 5624 6.0 9.5 7.8 3.1 5694 chr3R 4206026 intron CG14636 - chr3R 4208873 intron CG14636 - chr3R 4211720 intron CG14636 - chr3R_27_4205001 chr3R_4205001 RAL-361 2524 chr3R 4214748 4214817 chr3R 4215057 4215111 15 301 13.0 15.5 14.2 1.0 363 chr3R 4214748 intron,intron CG14636 -,aux + chr3R 4214930 intron,intron CG14636 -,aux + chr3R 4215111 intron,intron CG14636 -,aux + chr3R_15_4210001 chr3R_4210001 RAL-361 2525 chr3R 4241009 4241018 chr3R 4241185 4241194 10 176 76.0 71.0 73.5 0.1 185 chr3R 4241009 3` UTR Gel + chr3R 4241102 3` UTR CG14642 - chr3R 4241194 intron CG14642 - chr3R_10_4240001 chr3R_4240001 RAL-361 2526 chr3R 4241005 4241030 chr3R 4241195 4241206 9 178 80.0 68.5 74.2 0.1 201 chr3R 4241005 3` UTR Gel + chr3R 4241106 3` UTR CG14642 - chr3R 4241206 intron CG14642 - chr3R_9_4240001 chr3R_4240001 RAL-361 2527 chr3R 4240968 4240982 chr3R 4241207 4241221 14 204 65.5 65.0 65.2 0.2 253 chr3R 4240968 3` UTR Gel + chr3R 4241094 3` UTR CG14642 - chr3R 4241221 intron CG14642 - chr3R_14_4240001 chr3R_4240001 RAL-361 2528 chr3R 4366713 4366784 chr3R 4375146 4375197 roo 26 8432 6.5 14.0 10.2 2.3 8484 chr3R 4366713 3` UTR CG1090 + chr3R 4370955 intergenic not near genes chr3R 4375197 5` UTR CR44922 + chr3R_26_4370001 chr3R_4370001 RAL-361 2529 chr3R 4408372 4408432 chr3R 4412726 4412786 Juan 24 4351 10.5 11.0 10.8 2.0 4414 chr3R 4408372 intron CG32944 - chr3R 4410579 intron CG32944 - chr3R 4412786 intron CG32944 - chr3R_24_4410001 chr3R_4410001 RAL-361 2530 chr3R 4527541 4527598 chr3R 4528141 4528198 15 599 24.0 26.5 25.2 0.6 657 chr3R 4527541 intron CG34357 - chr3R 4527870 intron CG34357 - chr3R 4528198 intron CG34357 - chr3R_15_4525001 chr3R_4525001 RAL-361 2531 chr3R 4609510 4609570 chr3R 4610719 4610784 1360 12 1214 26.0 17.0 21.5 0.5 1274 chr3R 4609510 intergenic not near genes chr3R 4610147 intergenic not near genes chr3R 4610784 intergenic not near genes chr3R_12_4610001 chr3R_4610001 RAL-361 2532 chr3R 4635742 4635757 chr3R 4636105 4636120 5 363 36.0 41.0 38.5 0.1 378 chr3R 4635742 intergenic CR45673 + chr3R 4635931 intergenic CR45673 + chr3R 4636120 intergenic CR45673 + chr3R_5_4635001 chr3R_4635001 RAL-361 2533 chr3R 4657230 4657261 chr3R 4657584 4657615 9 353 30.5 22.0 26.2 0.3 385 chr3R 4657230 intron spartin + chr3R 4657422 intron spartin + chr3R 4657615 exon spartin + chr3R_9_4655001 chr3R_4655001 RAL-361 2534 chr3R 4680664 4680738 chr3R 4680793 4680852 26 128 19.5 17.5 18.5 1.3 188 chr3R 4680664 intron CG43427 + chr3R 4680758 intron CG43427 + chr3R 4680852 intron CG43427 + chr3R_26_4680001 chr3R_4680001 RAL-361 2535 chr3R 4733630 4733685 chr3R 4733804 4733859 14 174 15.0 15.5 15.2 0.9 229 chr3R 4733630 intergenic not near genes chr3R 4733744 intergenic not near genes chr3R 4733859 intergenic not near genes chr3R_14_4730001 chr3R_4730001 RAL-361 2536 chr3R 4753202 4753258 chr3R 4757555 4757611 F-element 26 4352 10.5 11.0 10.8 2.2 4409 chr3R 4753202 intron,intron atms +,CG44098 - chr3R 4755406 intron,intron atms +,CG44098 - chr3R 4757611 intron,exon atms +,CG44098 - chr3R_26_4755001 chr3R_4755001 RAL-361 2537 chr3R 4796068 4796133 chr3R 4796241 4796306 28 172 26.5 20.5 23.5 1.1 238 chr3R 4796068 intron ctrip - chr3R 4796187 intron ctrip - chr3R 4796306 intron ctrip - chr3R_28_4795001 chr3R_4795001 RAL-361 2538 chr3R 4861543 4861592 chr3R 4861649 4861711 23 119 9.0 7.0 8.0 2.6 168 chr3R 4861543 intron opa + chr3R 4861627 intron opa + chr3R 4861711 intron opa + chr3R_23_4860001 chr3R_4860001 RAL-361 2539 chr3R 4887427 4887512 chr3R 4894854 4894893 rover 25 7420 6.5 9.5 8.0 2.8 7466 chr3R 4887427 intergenic not near genes chr3R 4891160 intergenic not near genes chr3R 4894893 intergenic not near genes chr3R_25_4890001 chr3R_4890001 RAL-361 2540 chr3R 4922300 4922362 chr3R 4922429 4922491 16 129 20.0 22.0 21.0 0.7 191 chr3R 4922300 intron Cdep + chr3R 4922396 intron Cdep + chr3R 4922491 intron Cdep + chr3R_16_4920001 chr3R_4920001 RAL-361 2541 chr3R 4943580 4943623 chr3R 4943735 4943778 17 151 10.5 10.5 10.5 1.5 198 chr3R 4943580 intron Cdep + chr3R 4943679 intron Cdep + chr3R 4943778 intron Cdep + chr3R_17_4940001 chr3R_4940001 RAL-361 2542 chr3R 4948333 4948392 chr3R 4949005 4949064 34 672 47.5 43.0 45.2 0.7 731 chr3R 4948333 intergenic snRNA:U1:82Eb -,UbcD6 - chr3R 4948698 intergenic UbcD6 - chr3R 4949064 3` UTR UbcD6 - chr3R_34_4945001 chr3R_4945001 RAL-361 2543 chr3R 4965974 4966032 chr3R 4966106 4966174 30 142 4.5 7.0 5.8 4.4 200 chr3R 4965974 intron CG1124 + chr3R 4966074 intron CG1124 + chr3R 4966174 intron CG1124 + chr3R_30_4965001 chr3R_4965001 RAL-361 2544 chr3R 4981367 4981377 chr3R 4981496 4981506 4 129 18.5 6.5 12.5 0.3 139 chr3R 4981367 intergenic not near genes chr3R 4981436 intergenic not near genes chr3R 4981506 intergenic CG14662 - chr3R_4_4980001 chr3R_4980001 RAL-361 2545 chr3R 4981383 4981406 chr3R 4981491 4981535 9 121 12.0 6.0 9.0 0.9 152 chr3R 4981383 intergenic not near genes chr3R 4981459 intergenic not near genes chr3R 4981535 intergenic CG14662 - chr3R_9_4980001 chr3R_4980001 RAL-361 2546 chr3R 4981410 4981436 chr3R 4981489 4981562 10 110 7.0 6.0 6.5 1.3 152 chr3R 4981410 intergenic not near genes chr3R 4981486 intergenic not near genes chr3R 4981562 intergenic CG14662 - chr3R_10_4980001 chr3R_4980001 RAL-361 2547 chr3R 4984257 4984323 chr3R 4984399 4984465 24 142 20.5 20.5 20.5 1.1 208 chr3R 4984257 intergenic CG14662 -,CR43424 -,CR43478 + chr3R 4984361 intergenic CG14662 -,CR43424 -,CR43478 + chr3R 4984465 intergenic CR43424 -,CG14662 - chr3R_24_4980001 chr3R_4980001 RAL-361 2548 chr3R 4998352 4998375 chr3R 4998504 4998527 5 152 33.5 34.5 34.0 0.1 175 chr3R 4998352 intron CG2022 - chr3R 4998440 intron CG2022 - chr3R 4998527 intron CG2022 - chr3R_5_4995001 chr3R_4995001 RAL-361 2549 chr3R 5000248 5000298 chr3R 5000405 5000455 11 157 28.5 26.5 27.5 0.4 207 chr3R 5000248 intron CG2022 - chr3R 5000352 intron CG2022 - chr3R 5000455 intron CG2022 - chr3R_11_5000001 chr3R_5000001 RAL-361 2550 chr3R 5038710 5038759 chr3R 5038836 5038891 14 131 31.0 28.5 29.8 0.5 181 chr3R 5038710 intergenic not near genes chr3R 5038800 intergenic not near genes chr3R 5038891 intergenic not near genes chr3R_14_5035001 chr3R_5035001 RAL-361 2551 chr3R 5045801 5045875 chr3R 5052953 5053027 HMS-Beagle 38 7152 9.5 11.5 10.5 3.3 7226 chr3R 5045801 3` UTR CR43635 - chr3R 5049414 intergenic not near genes chr3R 5053027 intergenic CR45588 - chr3R_38_5045001 chr3R_5045001 RAL-361 2552 chr3R 5055319 5055385 chr3R 5055583 5055648 15 264 33.5 23.0 28.2 0.5 329 chr3R 5055319 intergenic not near genes chr3R 5055484 intergenic not near genes chr3R 5055648 intergenic not near genes chr3R_15_5055001 chr3R_5055001 RAL-361 2553 chr3R 5067220 5067294 chr3R 5067517 5067587 17 293 20.0 16.5 18.2 0.9 367 chr3R 5067220 intergenic not near genes chr3R 5067404 intergenic not near genes chr3R 5067587 intergenic not near genes chr3R_17_5065001 chr3R_5065001 RAL-361 2554 chr3R 5067937 5068013 chr3R 5073504 5073580 mdg3 43 5565 10.0 11.0 10.5 3.7 5643 chr3R 5067937 intergenic not near genes chr3R 5070758 intergenic not near genes chr3R 5073580 intergenic not near genes chr3R_43_5070001 chr3R_5070001 RAL-361 2555 chr3R 5105537 5105564 chr3R 5105630 5105656 6 105 15.0 18.0 16.5 0.3 119 chr3R 5105537 intergenic not near genes chr3R 5105596 intergenic not near genes chr3R 5105656 intergenic not near genes chr3R_6_5105001 chr3R_5105001 RAL-361 2556 chr3R 5162897 5162954 chr3R 5163099 5163156 17 202 18.0 19.0 18.5 0.9 259 chr3R 5162897 intron dpr16 + chr3R 5163026 intron dpr16 + chr3R 5163156 intron dpr16 + chr3R_17_5160001 chr3R_5160001 RAL-361 2557 chr3R 5236174 5236244 chr3R 5236352 5236422 17 177 40.5 37.0 38.8 0.4 248 chr3R 5236174 3` UTR,3` UTR Mms19 +,rtp - chr3R 5236298 3` UTR rtp - chr3R 5236422 exon rtp - chr3R_17_5235001 chr3R_5235001 RAL-361 2558 chr3R 5250856 5250910 chr3R 5251016 5251070 10 160 31.0 29.5 30.2 0.3 214 chr3R 5250856 intron CG12163 - chr3R 5250963 intron CG12163 - chr3R 5251070 intron CG12163 - chr3R_10_5250001 chr3R_5250001 RAL-361 2559 chr3R 5278065 5278105 chr3R 5278196 5278236 9 130 29.5 34.0 31.8 0.3 171 chr3R 5278065 intron mtd - chr3R 5278150 intron mtd - chr3R 5278236 intron mtd - chr3R_9_5275001 chr3R_5275001 RAL-361 2560 chr3R 5282967 5282985 chr3R 5283077 5283116 6 124 26.0 29.5 27.8 0.2 149 chr3R 5282967 intron mtd - chr3R 5283042 intron mtd - chr3R 5283116 intron mtd - chr3R_6_5280001 chr3R_5280001 RAL-361 2561 chr3R 5338362 5338416 chr3R 5343589 5343643 Rt1c 25 5226 14.5 16.0 15.2 1.5 5281 chr3R 5338362 intron mtd - chr3R 5341002 intron mtd - chr3R 5343643 intron mtd - chr3R_25_5340001 chr3R_5340001 RAL-361 2562 chr3R 5351918 5351982 chr3R 5352864 5352928 21 947 50.0 53.5 51.8 0.4 1010 chr3R 5351918 intergenic not near genes chr3R 5352423 intergenic not near genes chr3R 5352928 intergenic not near genes chr3R_21_5350001 chr3R_5350001 RAL-361 2563 chr3R 5376721 5376778 chr3R 5376840 5376875 16 124 15.5 16.0 15.8 1.0 154 chr3R 5376721 intergenic 7B2 +,CG14667 + chr3R 5376798 5` UTR 7B2 + chr3R 5376875 5` UTR 7B2 + chr3R_16_5375001 chr3R_5375001 RAL-361 2564 chr3R 5385927 5385997 chr3R 5386148 5386218 28 218 9.0 7.5 8.2 3.0 291 chr3R 5385927 intron kkv - chr3R 5386072 intron kkv - chr3R 5386218 intron kkv - chr3R_28_5385001 chr3R_5385001 RAL-361 2565 chr3R 5430065 5430114 chr3R 5430240 5430295 14 175 16.5 13.5 15.0 0.9 230 chr3R 5430065 intron CG14669 + chr3R 5430180 intron CG14669 + chr3R 5430295 intron CG14669 + chr3R_14_5430001 chr3R_5430001 RAL-361 2566 chr3R 5430116 5430130 chr3R 5430233 5430288 5 160 15.0 12.0 13.5 0.3 172 chr3R 5430116 intron CG14669 + chr3R 5430202 intron CG14669 + chr3R 5430288 intron CG14669 + chr3R_5_5430001 chr3R_5430001 RAL-361 2567 chr3R 5431341 5431399 chr3R 5431477 5431535 11 132 17.5 17.5 17.5 0.6 194 chr3R 5431341 intron CG14669 + chr3R 5431438 intron CG14669 + chr3R 5431535 intron CG14669 + chr3R_11_5430001 chr3R_5430001 RAL-361 2568 chr3R 5445917 5445980 chr3R 5452427 5452490 Burdock 24 6510 12.0 9.5 10.8 2.0 6573 chr3R 5445917 intron CG14669 + chr3R 5449204 intron CG14669 + chr3R 5452490 intron CG14669 + chr3R_24_5445001 chr3R_5445001 RAL-361 2569 chr3R 5494940 5495004 chr3R 5495075 5495139 12 135 18.5 19.5 19.0 0.6 199 chr3R 5494940 intron CG31547 - chr3R 5495040 intron CG31547 - chr3R 5495139 intron CG31547 - chr3R_12_5495001 chr3R_5495001 RAL-361 2570 chr3R 5502243 5502300 chr3R 5502607 5502628 8 353 14.0 10.5 12.2 0.6 385 chr3R 5502243 exon CG31547 - chr3R 5502436 5` UTR CG31547 - chr3R 5502628 5` UTR CG31547 - chr3R_8_5500001 chr3R_5500001 RAL-361 2571 chr3R 5506798 5506861 chr3R 5506980 5507043 20 181 25.5 21.5 23.5 0.8 245 chr3R 5506798 intergenic not near genes chr3R 5506920 intergenic not near genes chr3R 5507043 intergenic not near genes chr3R_20_5505001 chr3R_5505001 RAL-361 2572 chr3R 5688739 5688804 chr3R 5688910 5688968 15 169 17.5 17.5 17.5 0.8 229 chr3R 5688739 intron plx + chr3R 5688854 intron plx + chr3R 5688968 intron plx + chr3R_15_5685001 chr3R_5685001 RAL-361 2573 chr3R 5712042 5712112 chr3R 5712180 5712245 9 137 25.0 29.5 27.2 0.3 203 chr3R 5712042 3` UTR plx + chr3R 5712144 3` UTR plx + chr3R 5712245 3` UTR plx + chr3R_9_5710001 chr3R_5710001 RAL-361 2574 chr3R 5726048 5726114 chr3R 5726260 5726326 15 212 18.5 23.0 20.8 0.7 278 chr3R 5726048 intergenic not near genes chr3R 5726187 intergenic not near genes chr3R 5726326 intergenic not near genes chr3R_15_5725001 chr3R_5725001 RAL-361 2575 chr3R 5745978 5745998 chr3R 5746269 5746289 pogo 6 289 21.0 10.5 15.8 0.4 311 chr3R 5745978 3` UTR Madm + chr3R 5746134 3` UTR Madm + chr3R 5746289 3` UTR Madm + chr3R_6_5745001 chr3R_5745001 RAL-361 2576 chr3R 5746003 5746035 chr3R 5746263 5746326 pogo 17 288 13.0 9.5 11.2 1.4 323 chr3R 5746003 3` UTR Madm + chr3R 5746164 3` UTR Madm + chr3R 5746326 3` UTR Madm + chr3R_17_5745001 chr3R_5745001 RAL-361 2577 chr3R 5746971 5747037 chr3R 5753212 5753278 diver 33 6241 11.5 9.5 10.5 2.9 6307 chr3R 5746971 intergenic Madm + chr3R 5750124 intergenic not near genes chr3R 5753278 intergenic CG2091 - chr3R_33_5750001 chr3R_5750001 RAL-361 2578 chr3R 5765593 5765610 chr3R 5765721 5765740 4 132 33.0 26.5 29.8 0.1 147 chr3R 5765593 intron CG2082 - chr3R 5765666 intron CG2082 - chr3R 5765740 intron CG2082 - chr3R_4_5765001 chr3R_5765001 RAL-361 2579 chr3R 5769182 5769263 chr3R 5769330 5769388 13 143 23.0 21.5 22.2 0.6 206 chr3R 5769182 intron CG2082 - chr3R 5769285 intron CG2082 - chr3R 5769388 intron CG2082 - chr3R_13_5765001 chr3R_5765001 RAL-361 2580 chr3R 5772328 5772394 chr3R 5772536 5772602 29 208 10.5 6.5 8.5 3.1 274 chr3R 5772328 intron CG2082 - chr3R 5772465 intron CG2082 - chr3R 5772602 intron CG2082 - chr3R_29_5770001 chr3R_5770001 RAL-361 2581 chr3R 5775874 5775925 chr3R 5776567 5776623 10 696 32.5 17.5 25.0 0.4 749 chr3R 5775874 intron CG2082 - chr3R 5776248 intron CG2082 - chr3R 5776623 intron CG2082 - chr3R_10_5775001 chr3R_5775001 RAL-361 2582 chr3R 5791607 5791673 chr3R 5791980 5792046 21 373 21.0 18.0 19.5 1.0 439 chr3R 5791607 intergenic Rpn5 +,CG1218 + chr3R 5791826 intergenic CG1218 +,Rpn5 + chr3R 5792046 exon CG1218 + chr3R_21_5790001 chr3R_5790001 RAL-361 2583 chr3R 5809068 5809137 chr3R 5809359 5809428 pogo 40 290 10.5 15.5 13.0 2.9 360 chr3R 5809068 3` UTR CG11000 + chr3R 5809248 3` UTR CG11000 + chr3R 5809428 3` UTR CG11000 + chr3R_40_5805001 chr3R_5805001 RAL-361 2584 chr3R 5822340 5822402 chr3R 5823557 5823619 1360 33 1217 8.0 13.0 10.5 2.9 1279 chr3R 5822340 3` UTR CG2023 - chr3R 5822980 3` UTR CG2023 - chr3R 5823619 3` UTR CG2023 - chr3R_33_5820001 chr3R_5820001 RAL-361 2585 chr3R 5836158 5836175 chr3R 5836312 5836324 10 154 25.0 22.0 23.5 0.4 166 chr3R 5836158 exon,3` UTR CG1208 +,CR45192 - chr3R 5836241 intron CG1208 + chr3R 5836324 intron CG1208 + chr3R_10_5835001 chr3R_5835001 RAL-361 2586 chr3R 5860569 5860579 chr3R 5860722 5860732 5 153 19.5 33.5 26.5 0.2 163 chr3R 5860569 intron CG2017 - chr3R 5860650 intron CG2017 - chr3R 5860732 intron CG2017 - chr3R_5_5860001 chr3R_5860001 RAL-361 2587 chr3R 5896927 5896997 chr3R 5897336 5897406 19 408 14.5 18.0 16.2 1.1 479 chr3R 5896927 intron CG34113 - chr3R 5897166 intron CG34113 - chr3R 5897406 intron CG34113 - chr3R_19_5895001 chr3R_5895001 RAL-361 2588 chr3R 5913725 5913790 chr3R 5913853 5913918 15 128 24.0 21.0 22.5 0.6 193 chr3R 5913725 intron CG34113 - chr3R 5913822 intron CG34113 - chr3R 5913918 intron CG34113 - chr3R_15_5910001 chr3R_5910001 RAL-361 2589 chr3R 5927525 5927579 chr3R 5927815 5927869 pogo 27 289 10.0 9.5 9.8 2.5 344 chr3R 5927525 intron CG34113 - chr3R 5927697 intron CG34113 - chr3R 5927869 intron CG34113 - chr3R_27_5925001 chr3R_5925001 RAL-361 2590 chr3R 5947939 5947964 chr3R 5948068 5948103 9 136 22.0 15.0 18.5 0.5 164 chr3R 5947939 intron CG34113 - chr3R 5948021 intron CG34113 - chr3R 5948103 intron CG34113 - chr3R_9_5945001 chr3R_5945001 RAL-361 2591 chr3R 5947967 5947996 chr3R 5948063 5948097 11 135 15.5 13.5 14.5 0.7 130 chr3R 5947967 intron CG34113 - chr3R 5948032 intron CG34113 - chr3R 5948097 intron CG34113 - chr3R_11_5945001 chr3R_5945001 RAL-361 2592 chr3R 5968133 5968199 chr3R 5968263 5968329 17 130 23.5 24.5 24.0 0.7 196 chr3R 5968133 intergenic not near genes chr3R 5968231 intergenic not near genes chr3R 5968329 intergenic not near genes chr3R_17_5965001 chr3R_5965001 RAL-361 2593 chr3R 5989294 5989365 chr3R 5989421 5989465 22 126 9.0 5.0 7.0 2.8 171 chr3R 5989294 5` UTR CR44927 + chr3R 5989380 5` UTR CR44927 + chr3R 5989465 5` UTR CR44927 + chr3R_22_5985001 chr3R_5985001 RAL-361 2594 chr3R 6015565 6015579 chr3R 6015692 6015706 9 127 2.5 27.0 14.8 0.6 141 chr3R 6015565 intergenic not near genes chr3R 6015636 intergenic not near genes chr3R 6015706 intergenic not near genes chr3R_9_6015001 chr3R_6015001 RAL-361 2595 chr3R 6015928 6015990 chr3R 6024477 6024540 Tirant 17 8545 4.5 7.0 5.8 2.5 8612 chr3R 6015928 intergenic not near genes chr3R 6020234 intergenic not near genes chr3R 6024540 intergenic not near genes chr3R_17_6020001 chr3R_6020001 RAL-361 2596 chr3R 6051831 6051906 chr3R 6051962 6052037 29 127 7.0 6.0 6.5 3.9 206 chr3R 6051831 intergenic not near genes chr3R 6051934 intergenic not near genes chr3R 6052037 intergenic not near genes chr3R_29_6050001 chr3R_6050001 RAL-361 2597 chr3R 6119112 6119151 chr3R 6119248 6119287 14 136 8.5 14.0 11.2 1.1 175 chr3R 6119112 intergenic not near genes chr3R 6119200 intergenic not near genes chr3R 6119287 intergenic not near genes chr3R_14_6115001 chr3R_6115001 RAL-361 2598 chr3R 6121141 6121178 chr3R 6121376 6121446 BS 14 259 0.0 10.5 5.2 2.3 305 chr3R 6121141 intergenic not near genes chr3R 6121294 intergenic not near genes chr3R 6121446 intergenic not near genes chr3R_14_6120001 chr3R_6120001 RAL-361 2599 chr3R 6158465 6158534 chr3R 6167098 6167167 Tirant 17 8631 8.0 9.0 8.5 1.8 8702 chr3R 6158465 intergenic not near genes chr3R 6162816 intergenic not near genes chr3R 6167167 intergenic CG1077 + chr3R_17_6160001 chr3R_6160001 RAL-361 2600 chr3R 6171098 6171177 chr3R 6171512 6171589 25 412 4.5 4.5 4.5 4.5 491 chr3R 6171098 intergenic not near genes chr3R 6171344 intergenic not near genes chr3R 6171589 intergenic not near genes chr3R_25_6170001 chr3R_6170001 RAL-361 2601 chr3R 6175129 6175134 chr3R 6182451 6182456 HMS-Beagle2 4 7322 21.5 10.5 16.0 0.2 7327 chr3R 6175129 intergenic Osi1 + chr3R 6178792 intron CR45194 + chr3R 6182456 intergenic CR45194 + chr3R_4_6175001 chr3R_6175001 RAL-361 2602 chr3R 6175143 6175190 chr3R 6182446 6182512 HMS-Beagle2 18 7321 9.5 9.5 9.5 1.7 7369 chr3R 6175143 intergenic Osi1 + chr3R 6178828 intron CR45194 + chr3R 6182512 intergenic CR45194 + chr3R_18_6175001 chr3R_6175001 RAL-361 2603 chr3R 6226579 6226600 chr3R 6226716 6226738 7 135 19.5 19.5 19.5 0.3 159 chr3R 6226579 intergenic not near genes chr3R 6226658 intergenic not near genes chr3R 6226738 intergenic not near genes chr3R_7_6225001 chr3R_6225001 RAL-361 2604 chr3R 6226601 6226642 chr3R 6226709 6226780 9 130 15.0 18.0 16.5 0.5 179 chr3R 6226601 intergenic not near genes chr3R 6226690 intergenic not near genes chr3R 6226780 intergenic not near genes chr3R_9_6225001 chr3R_6225001 RAL-361 2605 chr3R 6283279 6283332 chr3R 6283416 6283469 12 137 24.5 21.5 23.0 0.5 190 chr3R 6283279 intergenic not near genes chr3R 6283374 intergenic not near genes chr3R 6283469 intergenic not near genes chr3R_12_6280001 chr3R_6280001 RAL-361 2606 chr3R 6310594 6310658 chr3R 6310882 6310934 10 286 26.5 33.5 30.0 0.3 340 chr3R 6310594 exon CG31560 + chr3R 6310764 exon CG31560 + chr3R 6310934 intergenic CG31560 + chr3R_10_6310001 chr3R_6310001 RAL-361 2607 chr3R 6316730 6316787 chr3R 6316873 6316930 9 142 28.0 24.5 26.2 0.3 200 chr3R 6316730 intron Osi17 + chr3R 6316830 intron Osi17 + chr3R 6316930 intron Osi17 + chr3R_9_6315001 chr3R_6315001 RAL-361 2608 chr3R 6421061 6421140 chr3R 6421275 6421354 23 210 11.5 11.5 11.5 1.8 293 chr3R 6421061 intron gpp + chr3R 6421208 intron gpp + chr3R 6421354 intron gpp + chr3R_23_6420001 chr3R_6420001 RAL-361 2609 chr3R 6428761 6428825 chr3R 6428913 6428977 11 152 27.5 25.0 26.2 0.4 216 chr3R 6428761 intron gpp + chr3R 6428869 intron gpp + chr3R 6428977 intron gpp + chr3R_11_6425001 chr3R_6425001 RAL-361 2610 chr3R 6474765 6474843 chr3R 6474892 6474943 17 125 17.5 20.5 19.0 0.8 178 chr3R 6474765 intergenic not near genes chr3R 6474854 intergenic not near genes chr3R 6474943 intergenic not near genes chr3R_17_6470001 chr3R_6470001 RAL-361 2611 chr3R 6509988 6510048 chr3R 6515113 6515178 jockey 22 5130 7.0 13.0 10.0 2.0 5190 chr3R 6509988 intergenic not near genes chr3R 6512583 intergenic not near genes chr3R 6515178 intergenic not near genes chr3R_22_6510001 chr3R_6510001 RAL-361 2612 chr3R 6523325 6523331 chr3R 6523717 6523757 4 418 23.5 24.5 24.0 0.2 432 chr3R 6523325 intergenic not near genes chr3R 6523541 intergenic not near genes chr3R 6523757 intergenic not near genes chr3R_4_6520001 chr3R_6520001 RAL-361 2613 chr3R 6526832 6526864 chr3R 6526966 6526995 5 144 33.0 30.0 31.5 0.2 163 chr3R 6526832 intergenic not near genes chr3R 6526914 intergenic not near genes chr3R 6526995 intergenic not near genes chr3R_5_6525001 chr3R_6525001 RAL-361 2614 chr3R 6582476 6582530 chr3R 6582596 6582660 10 129 12.0 12.5 12.2 0.8 184 chr3R 6582476 intron dpr11 - chr3R 6582568 intron dpr11 - chr3R 6582660 intron dpr11 - chr3R_10_6580001 chr3R_6580001 RAL-361 2615 chr3R 6717701 6717701 chr3R 6717832 6717888 6 169 3.0 9.5 6.2 0.8 187 chr3R 6717701 intron pb - chr3R 6717794 intron pb - chr3R 6717888 intron pb - chr3R_6_6715001 chr3R_6715001 RAL-361 2616 chr3R 6737454 6737518 chr3R 6739291 6739334 Doc 22 1833 8.5 12.5 10.5 1.9 1880 chr3R 6737454 intron pb - chr3R 6738394 intron pb - chr3R 6739334 intron pb - chr3R_22_6735001 chr3R_6735001 RAL-361 2617 chr3R 6769717 6769737 chr3R 6769860 6769880 9 143 19.5 22.0 20.8 0.4 163 chr3R 6769717 intron CR42721 + chr3R 6769798 intron CR42721 + chr3R 6769880 intron CR42721 + chr3R_9_6765001 chr3R_6765001 RAL-361 2618 chr3R 6773509 6773532 chr3R 6773647 6773671 4 138 22.5 17.0 19.8 0.2 162 chr3R 6773509 intron CR42721 + chr3R 6773590 intron CR42721 + chr3R 6773671 intron CR42721 + chr3R_4_6770001 chr3R_6770001 RAL-361 2619 chr3R 6773540 6773578 chr3R 6773644 6773714 9 126 18.5 17.5 18.0 0.5 174 chr3R 6773540 intron CR42721 + chr3R 6773627 intron CR42721 + chr3R 6773714 intron CR42721 + chr3R_9_6770001 chr3R_6770001 RAL-361 2620 chr3R 6780410 6780474 chr3R 6780543 6780607 12 133 25.0 30.0 27.5 0.4 197 chr3R 6780410 intergenic not near genes chr3R 6780508 intergenic not near genes chr3R 6780607 intergenic not near genes chr3R_12_6780001 chr3R_6780001 RAL-361 2621 chr3R 6782398 6782464 chr3R 6782527 6782593 14 128 28.0 29.5 28.8 0.5 195 chr3R 6782398 intergenic not near genes chr3R 6782496 intergenic not near genes chr3R 6782593 intergenic not near genes chr3R_14_6780001 chr3R_6780001 RAL-361 2622 chr3R 6803696 6803745 chr3R 6803831 6803871 12 131 9.0 9.5 9.2 1.2 175 chr3R 6803696 intergenic not near genes chr3R 6803784 intergenic not near genes chr3R 6803871 intergenic not near genes chr3R_12_6800001 chr3R_6800001 RAL-361 2623 chr3R 6807221 6807273 chr3R 6807353 6807405 10 132 29.0 22.0 25.5 0.4 184 chr3R 6807221 intergenic not near genes chr3R 6807313 intergenic not near genes chr3R 6807405 intergenic not near genes chr3R_10_6805001 chr3R_6805001 RAL-361 2624 chr3R 6827975 6828034 chr3R 6828101 6828160 11 126 28.5 31.5 30.0 0.4 185 chr3R 6827975 intron Scr - chr3R 6828068 intron Scr - chr3R 6828160 intron Scr - chr3R_11_6825001 chr3R_6825001 RAL-361 2625 chr3R 6856333 6856398 chr3R 6856500 6856565 18 167 6.0 6.0 6.0 2.6 232 chr3R 6856333 intergenic not near genes chr3R 6856449 intergenic not near genes chr3R 6856565 intergenic not near genes chr3R_18_6855001 chr3R_6855001 RAL-361 2626 chr3R 6862173 6862239 chr3R 6862310 6862376 26 136 8.5 8.5 8.5 2.7 203 chr3R 6862173 intergenic not near genes chr3R 6862274 intergenic not near genes chr3R 6862376 intergenic not near genes chr3R_26_6860001 chr3R_6860001 RAL-361 2627 chr3R 6866334 6866396 chr3R 6866693 6866718 13 356 26.5 21.0 23.8 0.5 384 chr3R 6866334 intergenic ftz + chr3R 6866526 intergenic ftz + chr3R 6866718 intergenic ftz + chr3R_13_6865001 chr3R_6865001 RAL-361 2628 chr3R 6900700 6900720 chr3R 6900827 6900847 4 127 22.0 20.5 21.2 0.2 147 chr3R 6900700 intron Antp - chr3R 6900774 intron Antp - chr3R 6900847 intron Antp - chr3R_4_6900001 chr3R_6900001 RAL-361 2629 chr3R 6912062 6912134 chr3R 6912223 6912295 6 161 24.5 22.5 23.5 0.2 233 chr3R 6912062 intron Antp - chr3R 6912178 intron Antp - chr3R 6912295 intron Antp - chr3R_6_6910001 chr3R_6910001 RAL-361 2630 chr3R 6918027 6918085 chr3R 6918155 6918213 15 126 25.5 22.5 24.0 0.6 186 chr3R 6918027 intron Antp - chr3R 6918120 intron Antp - chr3R 6918213 intron Antp - chr3R_15_6915001 chr3R_6915001 RAL-361 2631 chr3R 6923542 6923583 chr3R 6923679 6923714 13 135 28.5 27.5 28.0 0.4 172 chr3R 6923542 intron Antp - chr3R 6923628 intron Antp - chr3R 6923714 intron Antp - chr3R_13_6920001 chr3R_6920001 RAL-361 2632 chr3R 6978840 6978911 chr3R 6978975 6979046 10 135 25.5 25.5 25.5 0.4 206 chr3R 6978840 intron Antp - chr3R 6978943 intron Antp - chr3R 6979046 intron Antp - chr3R_10_6975001 chr3R_6975001 RAL-361 2633 chr3R 7002571 7002587 chr3R 7002736 7002752 4 165 19.0 30.5 24.8 0.2 181 chr3R 7002571 intergenic not near genes chr3R 7002662 intergenic not near genes chr3R 7002752 intergenic not near genes chr3R_4_7000001 chr3R_7000001 RAL-361 2634 chr3R 7026838 7026876 chr3R 7026943 7027012 6 130 24.0 24.5 24.2 0.2 174 chr3R 7026838 intergenic not near genes chr3R 7026925 intergenic not near genes chr3R 7027012 intergenic not near genes chr3R_6_7025001 chr3R_7025001 RAL-361 2635 chr3R 7036730 7036786 chr3R 7036854 7036915 7 126 29.5 29.0 29.2 0.2 185 chr3R 7036730 intergenic not near genes chr3R 7036822 intergenic not near genes chr3R 7036915 intergenic not near genes chr3R_7_7035001 chr3R_7035001 RAL-361 2636 chr3R 7042829 7042890 chr3R 7043001 7043062 18 171 12.5 16.0 14.2 1.2 233 chr3R 7042829 intergenic not near genes chr3R 7042946 intergenic not near genes chr3R 7043062 intergenic not near genes chr3R_18_7040001 chr3R_7040001 RAL-361 2637 chr3R 7060213 7060259 chr3R 7060344 7060390 7 131 20.0 9.0 14.5 0.5 177 chr3R 7060213 3` UTR dj + chr3R 7060302 3` UTR dj + chr3R 7060390 3` UTR dj + chr3R_7_7060001 chr3R_7060001 RAL-361 2638 chr3R 7092741 7092772 chr3R 7093355 7093381 5 613 34.5 30.0 32.2 0.2 640 chr3R 7092741 3` UTR CR43685 - chr3R 7093061 intron CR43685 - chr3R 7093381 3` UTR CR43685 - chr3R_5_7090001 chr3R_7090001 RAL-361 2639 chr3R 7092775 7092807 chr3R 7093354 7093421 15 612 34.5 30.0 32.2 0.5 646 chr3R 7092775 3` UTR CR43685 - chr3R 7093098 intron CR43685 - chr3R 7093421 3` UTR CR43685 - chr3R_15_7090001 chr3R_7090001 RAL-361 2640 chr3R 7103234 7103302 chr3R 7103360 7103420 19 114 9.0 10.0 9.5 1.8 186 chr3R 7103234 intron Alh - chr3R 7103327 intron Alh - chr3R 7103420 intron Alh - chr3R_19_7100001 chr3R_7100001 RAL-361 2641 chr3R 7121690 7121735 chr3R 7121823 7121862 11 132 9.0 14.0 11.5 0.9 172 chr3R 7121690 exon Alh - chr3R 7121776 intron Alh - chr3R 7121862 intron Alh - chr3R_11_7120001 chr3R_7120001 RAL-361 2642 chr3R 7126472 7126529 chr3R 7126617 7126674 29 144 11.0 12.5 11.8 2.3 202 chr3R 7126472 3` UTR,3` UTR CG10098 +,CG10068 - chr3R 7126573 3` UTR CG10068 - chr3R 7126674 3` UTR CG10068 - chr3R_29_7125001 chr3R_7125001 RAL-361 2643 chr3R 7173637 7173700 chr3R 7173767 7173795 23 128 11.5 6.5 9.0 2.3 158 chr3R 7173637 intron sas + chr3R 7173716 intron sas + chr3R 7173795 intron sas + chr3R_23_7170001 chr3R_7170001 RAL-361 2644 chr3R 7210558 7210608 chr3R 7210685 7210744 11 129 0.0 11.0 5.5 1.7 186 chr3R 7210558 intergenic not near genes chr3R 7210651 intergenic not near genes chr3R 7210744 intergenic not near genes chr3R_11_7210001 chr3R_7210001 RAL-361 2645 chr3R 7232696 7232745 chr3R 7232833 7232882 14 137 11.0 10.0 10.5 1.2 186 chr3R 7232696 intron CG14608 + chr3R 7232789 intron CG14608 + chr3R 7232882 intron CG14608 + chr3R_14_7230001 chr3R_7230001 RAL-361 2646 chr3R 7270896 7270961 chr3R 7271030 7271095 8 134 8.0 12.5 10.2 0.7 199 chr3R 7270896 intergenic Syt4 + chr3R 7270996 intergenic Syt4 + chr3R 7271095 intergenic Syt4 +,CG10032 + chr3R_8_7270001 chr3R_7270001 RAL-361 2647 chr3R 7319767 7319781 chr3R 7319898 7319912 7 131 17.0 23.0 20.0 0.3 145 chr3R 7319767 intergenic not near genes chr3R 7319840 intergenic not near genes chr3R 7319912 intergenic not near genes chr3R_7_7315001 chr3R_7315001 RAL-361 2648 chr3R 7341199 7341259 chr3R 7341359 7341419 9 160 18.0 10.5 14.2 0.6 220 chr3R 7341199 intergenic not near genes chr3R 7341309 intergenic not near genes chr3R 7341419 intergenic not near genes chr3R_9_7340001 chr3R_7340001 RAL-361 2649 chr3R 7436490 7436508 chr3R 7436624 7436642 INE-1 5 134 11.5 16.5 14.0 0.3 152 chr3R 7436490 intergenic not near genes chr3R 7436566 intergenic not near genes chr3R 7436642 intergenic not near genes chr3R_5_7435001 chr3R_7435001 RAL-361 2650 chr3R 7447948 7448011 chr3R 7448076 7448139 6 128 15.0 13.5 14.2 0.4 191 chr3R 7447948 intergenic not near genes chr3R 7448044 intergenic not near genes chr3R 7448139 intergenic not near genes chr3R_6_7445001 chr3R_7445001 RAL-361 2651 chr3R 7476591 7476660 chr3R 7476834 7476903 23 243 22.0 17.5 19.8 1.1 312 chr3R 7476591 intergenic not near genes chr3R 7476747 intergenic not near genes chr3R 7476903 intergenic not near genes chr3R_23_7475001 chr3R_7475001 RAL-361 2652 chr3R 7545653 7545726 chr3R 7545926 7545999 36 272 9.5 9.0 9.2 3.5 346 chr3R 7545653 intergenic alpha-Est1 -,alpha-Est2 + chr3R 7545826 3` UTR alpha-Est1 - chr3R 7545999 exon alpha-Est1 - chr3R_36_7545001 chr3R_7545001 RAL-361 2653 chr3R 7548564 7548632 chr3R 7548693 7548749 17 128 26.0 26.5 26.2 0.6 185 chr3R 7548564 intron alpha-Est1 - chr3R 7548656 intron alpha-Est1 - chr3R 7548749 intron alpha-Est1 - chr3R_17_7545001 chr3R_7545001 RAL-361 2654 chr3R 7574623 7574652 chr3R 7574705 7574784 8 122 14.5 17.0 15.8 0.5 161 chr3R 7574623 intron CG34127 - chr3R 7574704 intron CG34127 - chr3R 7574784 intron CG34127 - chr3R_8_7570001 chr3R_7570001 RAL-361 2655 chr3R 7617945 7618015 chr3R 7618087 7618157 12 142 21.0 19.5 20.2 0.6 212 chr3R 7617945 intron CG34127 - chr3R 7618051 intron CG34127 - chr3R 7618157 intron CG34127 - chr3R_12_7615001 chr3R_7615001 RAL-361 2656 chr3R 7621482 7621556 chr3R 7621622 7621673 21 138 3.0 6.0 4.5 3.8 191 chr3R 7621482 intron CG34127 - chr3R 7621578 intron CG34127 - chr3R 7621673 intron CG34127 - chr3R_21_7620001 chr3R_7620001 RAL-361 2657 chr3R 7631215 7631230 chr3R 7631352 7631367 4 137 26.0 22.0 24.0 0.2 152 chr3R 7631215 intron CG34127 - chr3R 7631291 intron CG34127 - chr3R 7631367 intron CG34127 - chr3R_4_7630001 chr3R_7630001 RAL-361 2658 chr3R 7635612 7635672 chr3R 7635745 7635805 10 133 24.0 29.0 26.5 0.4 193 chr3R 7635612 intron CG34127 - chr3R 7635708 intron CG34127 - chr3R 7635805 intron CG34127 - chr3R_10_7635001 chr3R_7635001 RAL-361 2659 chr3R 7664664 7664687 chr3R 7664864 7664887 8 200 19.0 11.5 15.2 0.5 223 chr3R 7664664 intron Nlg1 + chr3R 7664776 intron Nlg1 + chr3R 7664887 intron Nlg1 + chr3R_8_7660001 chr3R_7660001 RAL-361 2660 chr3R 7677906 7677935 chr3R 7678038 7678098 5 153 32.0 29.0 30.5 0.2 192 chr3R 7677906 intron Nlg1 + chr3R 7678002 intron Nlg1 + chr3R 7678098 intron Nlg1 + chr3R_5_7675001 chr3R_7675001 RAL-361 2661 chr3R 7694534 7694603 chr3R 7713645 7713714 invader3 29 19111 12.0 9.0 10.5 2.5 19180 chr3R 7694534 3` UTR Nlg1 + chr3R 7704124 intergenic not near genes chr3R 7713714 intergenic not near genes chr3R_29_7700001 chr3R_7700001 RAL-361 2662 chr3R 7724401 7724471 chr3R 7724541 7724593 10 135 23.5 25.5 24.5 0.4 192 chr3R 7724401 3` UTR CG2616 + chr3R 7724497 3` UTR CG2616 + chr3R 7724593 3` UTR CG2616 + chr3R_10_7720001 chr3R_7720001 RAL-361 2663 chr3R 7729422 7729491 chr3R 7737410 7737479 Stalker2 38 7986 10.5 11.0 10.8 3.2 8057 chr3R 7729422 intergenic not near genes chr3R 7733450 intergenic not near genes chr3R 7737479 intergenic not near genes chr3R_38_7730001 chr3R_7730001 RAL-361 2664 chr3R 7738554 7738607 chr3R 7738750 7738803 10 196 27.5 19.5 23.5 0.4 249 chr3R 7738554 intergenic CG43254 - chr3R 7738678 intergenic CG43254 - chr3R 7738803 intergenic CG43254 - chr3R_10_7735001 chr3R_7735001 RAL-361 2665 chr3R 7750773 7750781 chr3R 7751136 7751144 6 363 22.5 22.0 22.2 0.3 371 chr3R 7750773 intergenic not near genes chr3R 7750958 intergenic not near genes chr3R 7751144 intergenic not near genes chr3R_6_7750001 chr3R_7750001 RAL-361 2666 chr3R 7750783 7750840 chr3R 7751125 7751168 15 355 14.5 18.5 16.5 0.9 385 chr3R 7750783 intergenic not near genes chr3R 7750976 intergenic not near genes chr3R 7751168 intergenic not near genes chr3R_15_7750001 chr3R_7750001 RAL-361 2667 chr3R 7760206 7760280 chr3R 7760765 7760839 23 558 8.0 8.0 8.0 2.6 633 chr3R 7760206 intron Sp7 + chr3R 7760522 intron Sp7 + chr3R 7760839 5` UTR Sp7 + chr3R_23_7760001 chr3R_7760001 RAL-361 2668 chr3R 7773344 7773344 chr3R 21907534 21907536 6 14134191 28.5 36.0 32.2 0.2 14134192 chr3R 7773344 intergenic not near genes chr3R 14840440 intron btsz - chr3R 21907536 intergenic CG6678 + chr3R_6_14840001 chr3R_14840001 RAL-361 2669 chr3R 7775865 7775944 chr3R 7775996 7776073 22 130 27.0 25.5 26.2 0.8 208 chr3R 7775865 intergenic not near genes chr3R 7775969 intergenic not near genes chr3R 7776073 intergenic not near genes chr3R_22_7775001 chr3R_7775001 RAL-361 2670 chr3R 7832711 7832735 chr3R 7832836 7832852 4 128 21.5 25.5 23.5 0.2 141 chr3R 7832711 intron CG34384 + chr3R 7832782 intron CG34384 + chr3R 7832852 intron CG34384 + chr3R_4_7830001 chr3R_7830001 RAL-361 2671 chr3R 7849621 7849657 chr3R 7850838 7850874 1360 5 1217 26.0 25.0 25.5 0.2 1253 chr3R 7849621 intron CG34384 + chr3R 7850248 intron CG34384 + chr3R 7850874 intron CG34384 + chr3R_5_7850001 chr3R_7850001 RAL-361 2672 chr3R 7857605 7857660 chr3R 7857738 7857793 13 131 32.0 27.0 29.5 0.4 188 chr3R 7857605 3` UTR CG17816 - chr3R 7857699 3` UTR CG17816 - chr3R 7857793 3` UTR CG17816 - chr3R_13_7855001 chr3R_7855001 RAL-361 2673 chr3R 7883093 7883148 chr3R 7883221 7883276 17 128 33.0 32.5 32.8 0.5 183 chr3R 7883093 intron CG17816 - chr3R 7883184 intron CG17816 - chr3R 7883276 intron CG17816 - chr3R_17_7880001 chr3R_7880001 RAL-361 2674 chr3R 7973278 7973336 chr3R 7974390 7974448 1360 33 1112 13.0 15.0 14.0 2.2 1170 chr3R 7973278 intergenic not near genes chr3R 7973863 intergenic not near genes chr3R 7974448 3` UTR CD98hc - chr3R_33_7970001 chr3R_7970001 RAL-361 2675 chr3R 7987149 7987212 chr3R 7987288 7987351 15 139 21.0 18.0 19.5 0.7 202 chr3R 7987149 intron CG2781 - chr3R 7987250 intron CG2781 - chr3R 7987351 intron CG2781 - chr3R_15_7985001 chr3R_7985001 RAL-361 2676 chr3R 8040609 8040671 chr3R 8040743 8040806 8 135 27.0 33.5 30.2 0.3 197 chr3R 8040609 intergenic not near genes chr3R 8040708 intergenic not near genes chr3R 8040806 intergenic CG43060 + chr3R_8_8040001 chr3R_8040001 RAL-361 2677 chr3R 8049021 8049044 chr3R 8049645 8049656 6 622 10.5 10.0 10.2 0.5 635 chr3R 8049021 intron CG43060 + chr3R 8049338 intron,intron CG43060 +,CG43618 + chr3R 8049656 intron CG43060 + chr3R_6_8045001 chr3R_8045001 RAL-361 2678 chr3R 8081125 8081171 chr3R 8081253 8081274 5 123 23.5 17.5 20.5 0.2 149 chr3R 8081125 intron mAChR-B + chr3R 8081200 intron mAChR-B + chr3R 8081274 intron mAChR-B + chr3R_5_8080001 chr3R_8080001 RAL-361 2679 chr3R 8090229 8090301 chr3R 8090456 8090518 16 226 19.0 21.0 20.0 0.8 289 chr3R 8090229 5` UTR CR44330 + chr3R 8090374 intergenic CR44330 + chr3R 8090518 intergenic CR44330 + chr3R_16_8090001 chr3R_8090001 RAL-361 2680 chr3R 8090514 8090554 chr3R 8094042 8094081 297 11 3528 6.5 8.0 7.2 1.3 3567 chr3R 8090514 intergenic CR44330 + chr3R 8092298 intergenic not near genes chr3R 8094081 intergenic CG7900 + chr3R_11_8090001 chr3R_8090001 RAL-361 2681 chr3R 8094369 8094434 chr3R 8099724 8099789 Transpac 32 5354 11.0 12.0 11.5 2.6 5420 chr3R 8094369 intron CG7900 + chr3R 8097079 intron CG7900 + chr3R 8099789 intron CG7900 + chr3R_32_8095001 chr3R_8095001 RAL-361 2682 chr3R 8101727 8101787 chr3R 8104851 8104921 G2 24 3132 5.5 10.0 7.8 2.7 3194 chr3R 8101727 exon CG7900 + chr3R 8103324 intron CG7900 + chr3R 8104921 3` UTR CG7900 + chr3R_24_8100001 chr3R_8100001 RAL-361 2683 chr3R 8107345 8107410 chr3R 8107529 8107594 12 182 22.0 18.5 20.2 0.6 249 chr3R 8107345 intron puc + chr3R 8107470 intron puc + chr3R 8107594 intron puc + chr3R_12_8105001 chr3R_8105001 RAL-361 2684 chr3R 8127397 8127455 chr3R 8130049 8130107 17 2652 54.0 64.5 59.2 0.3 2710 chr3R 8127397 intron Gie + chr3R 8128752 3` UTR Gie + chr3R 8130107 intergenic Gie + chr3R_17_8125001 chr3R_8125001 RAL-361 2685 chr3R 8207511 8207574 chr3R 8208402 8208468 F-element 11 891 7.5 7.5 7.5 1.3 957 chr3R 8207511 intergenic not near genes chr3R 8207990 intergenic not near genes chr3R 8208468 intergenic not near genes chr3R_11_8205001 chr3R_8205001 RAL-361 2686 chr3R 8212984 8213019 chr3R 8213117 8213136 15 130 10.5 18.5 14.5 1.0 152 chr3R 8212984 intergenic not near genes chr3R 8213060 intergenic not near genes chr3R 8213136 intergenic not near genes chr3R_15_8210001 chr3R_8210001 RAL-361 2687 chr3R 8213026 8213040 chr3R 8213105 8213173 8 118 6.0 13.5 9.8 0.7 147 chr3R 8213026 intergenic not near genes chr3R 8213100 intergenic not near genes chr3R 8213173 intergenic not near genes chr3R_8_8210001 chr3R_8210001 RAL-361 2688 chr3R 8255465 8255474 chr3R 8255604 8255609 4 138 17.5 7.0 12.2 0.3 144 chr3R 8255465 intron mtg + chr3R 8255537 intron mtg + chr3R 8255609 intron mtg + chr3R_4_8255001 chr3R_8255001 RAL-361 2689 chr3R 8255475 8255530 chr3R 8255600 8255669 20 133 7.0 6.0 6.5 2.7 194 chr3R 8255475 intron mtg + chr3R 8255572 intron mtg + chr3R 8255669 intron mtg + chr3R_20_8255001 chr3R_8255001 RAL-361 2690 chr3R 8273691 8273759 chr3R 8273828 8273896 29 136 7.5 14.0 10.8 2.5 205 chr3R 8273691 intergenic not near genes chr3R 8273794 intergenic not near genes chr3R 8273896 intergenic not near genes chr3R_29_8270001 chr3R_8270001 RAL-361 2691 chr3R 8339246 8339247 chr3R 21907534 21907536 32 13568288 36.0 36.0 36.0 0.9 13568290 chr3R 8339246 intergenic not near genes chr3R 15123391 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_32_15120001 chr3R_15120001 RAL-361 2692 chr3R 8358072 8358139 chr3R 8358366 8358433 5 294 22.5 23.0 22.8 0.2 361 chr3R 8358072 intron stck + chr3R 8358252 intron stck + chr3R 8358433 intron stck + chr3R_5_8355001 chr3R_8355001 RAL-361 2693 chr3R 8359538 8359598 chr3R 8362196 8362256 13 2660 49.5 35.0 42.2 0.3 2718 chr3R 8359538 exon stck + chr3R 8360897 exon CG9684 - chr3R 8362256 exon CG9684 - chr3R_13_8360001 chr3R_8360001 RAL-361 2694 chr3R 8374129 8374173 chr3R 8374294 8374330 12 163 8.0 6.5 7.2 1.5 201 chr3R 8374129 intron CG45263 - chr3R 8374230 intron CG45263 - chr3R 8374330 intron CG45263 - chr3R_12_8370001 chr3R_8370001 RAL-361 2695 chr3R 8393530 8393600 chr3R 8393664 8393734 16 130 16.0 22.0 19.0 0.8 204 chr3R 8393530 intron CG45263 - chr3R 8393632 intron CG45263 - chr3R 8393734 intron CG45263 - chr3R_16_8390001 chr3R_8390001 RAL-361 2696 chr3R 8402970 8403030 chr3R 8412186 8412246 roo 22 9214 13.5 9.0 11.2 1.8 9276 chr3R 8402970 intron CG45263 - chr3R 8407608 intron CG45263 - chr3R 8412246 intron CG45263 - chr3R_22_8405001 chr3R_8405001 RAL-361 2697 chr3R 8478042 8478105 chr3R 8478172 8478235 7 130 28.5 32.5 30.5 0.2 193 chr3R 8478042 intergenic CG45263 - chr3R 8478138 intergenic not near genes chr3R 8478235 intergenic not near genes chr3R_7_8475001 chr3R_8475001 RAL-361 2698 chr3R 8506814 8506829 chr3R 8506945 8506960 5 131 23.5 23.5 23.5 0.2 146 chr3R 8506814 intergenic not near genes chr3R 8506887 intergenic not near genes chr3R 8506960 intergenic not near genes chr3R_5_8505001 chr3R_8505001 RAL-361 2699 chr3R 8527655 8527716 chr3R 8528012 8528073 18 355 20.0 13.0 16.5 1.0 418 chr3R 8527655 intergenic not near genes chr3R 8527864 intergenic not near genes chr3R 8528073 intergenic CG11741 - chr3R_18_8525001 chr3R_8525001 RAL-361 2700 chr3R 8547101 8547171 chr3R 8547240 8547310 15 132 17.5 26.5 22.0 0.7 209 chr3R 8547101 5` UTR CR45574 + chr3R 8547206 5` UTR CR45574 + chr3R 8547310 5` UTR CR45574 + chr3R_15_8545001 chr3R_8545001 RAL-361 2701 chr3R 8561018 8561063 chr3R 8562299 8562344 15 1284 42.0 38.0 40.0 0.4 1326 chr3R 8561018 exon pch2 - chr3R 8561681 5` UTR pch2 - chr3R 8562344 intron mRpS18A - chr3R_15_8560001 chr3R_8560001 RAL-361 2702 chr3R 8561012 8561088 chr3R 8562345 8562369 7 1296 41.5 38.5 40.0 0.2 1357 chr3R 8561012 exon pch2 - chr3R 8561690 5` UTR pch2 - chr3R 8562369 intron mRpS18A - chr3R_7_8560001 chr3R_8560001 RAL-361 2703 chr3R 8570436 8570505 chr3R 8575122 8575191 HMS-Beagle 30 4683 7.5 13.5 10.5 2.6 4755 chr3R 8570436 intergenic not near genes chr3R 8572814 intergenic not near genes chr3R 8575191 intergenic not near genes chr3R_30_8570001 chr3R_8570001 RAL-361 2704 chr3R 8575891 8575957 chr3R 8576024 8576033 12 124 12.5 15.5 14.0 0.8 142 chr3R 8575891 intergenic not near genes chr3R 8575962 intergenic not near genes chr3R 8576033 intergenic not near genes chr3R_12_8575001 chr3R_8575001 RAL-361 2705 chr3R 8601732 8601787 chr3R 8610934 8610990 roo 19 9201 9.5 5.0 7.2 2.3 9258 chr3R 8601732 intron 5-HT2B + chr3R 8606361 intron 5-HT2B + chr3R 8610990 intron 5-HT2B + chr3R_19_8605001 chr3R_8605001 RAL-361 2706 chr3R 8614791 8614814 chr3R 8615044 8615067 13 253 0.0 15.5 7.8 1.5 276 chr3R 8614791 intron 5-HT2B + chr3R 8614929 intron 5-HT2B + chr3R 8615067 intron 5-HT2B + chr3R_13_8610001 chr3R_8610001 RAL-361 2707 chr3R 8636885 8636949 chr3R 8637238 8637302 21 350 27.5 33.5 30.5 0.7 417 chr3R 8636885 intergenic not near genes chr3R 8637094 intergenic not near genes chr3R 8637302 intergenic not near genes chr3R_21_8635001 chr3R_8635001 RAL-361 2708 chr3R 8685246 8685313 chr3R 8685396 8685463 23 149 13.5 16.0 14.8 1.5 217 chr3R 8685246 intron CR44937 - chr3R 8685354 intron CR44937 - chr3R 8685463 intron CR44937 - chr3R_23_8685001 chr3R_8685001 RAL-361 2709 chr3R 8707280 8707379 chr3R 8709793 8709870 jockey 17 2493 6.0 4.5 5.2 2.7 2590 chr3R 8707280 intergenic not near genes chr3R 8708575 intergenic not near genes chr3R 8709870 intergenic not near genes chr3R_17_8705001 chr3R_8705001 RAL-361 2710 chr3R 8868767 8868779 chr3R 8872661 8872673 297 5 3894 11.0 8.0 9.5 0.5 3906 chr3R 8868767 intron pyd - chr3R 8870720 intron pyd - chr3R 8872673 intron pyd - chr3R_5_8870001 chr3R_8870001 RAL-361 2711 chr3R 8875504 8875567 chr3R 8875619 8875639 14 115 14.5 18.0 16.2 0.8 135 chr3R 8875504 intron pyd - chr3R 8875572 intron pyd - chr3R 8875639 intron pyd - chr3R_14_8875001 chr3R_8875001 RAL-361 2712 chr3R 8898180 8898212 chr3R 8913810 8913842 297 16 15629 11.0 7.0 9.0 1.6 15662 chr3R 8898180 intron pyd - chr3R 8906011 intron pyd - chr3R 8913842 intron pyd - chr3R_16_8905001 chr3R_8905001 RAL-361 2713 chr3R 8917846 8917911 chr3R 8917976 8918041 25 130 5.0 7.0 6.0 3.6 195 chr3R 8917846 intron pyd - chr3R 8917944 intron pyd - chr3R 8918041 intron pyd - chr3R_25_8915001 chr3R_8915001 RAL-361 2714 chr3R 9036337 9036394 chr3R 9036465 9036522 12 128 23.5 25.0 24.2 0.5 185 chr3R 9036337 intron neur - chr3R 9036430 intron neur - chr3R 9036522 intron neur - chr3R_12_9035001 chr3R_9035001 RAL-361 2715 chr3R 9036671 9036740 chr3R 9036817 9036886 18 146 19.0 24.0 21.5 0.8 215 chr3R 9036671 intron neur - chr3R 9036778 intron neur - chr3R 9036886 intron neur - chr3R_18_9035001 chr3R_9035001 RAL-361 2716 chr3R 9099409 9099481 chr3R 9099543 9099614 13 131 19.5 22.0 20.8 0.6 205 chr3R 9099409 intron pum - chr3R 9099512 intron pum - chr3R 9099614 intron pum - chr3R_13_9095001 chr3R_9095001 RAL-361 2717 chr3R 9101806 9101814 chr3R 9101954 9101962 4 148 32.5 32.0 32.2 0.1 156 chr3R 9101806 intron pum - chr3R 9101884 intron pum - chr3R 9101962 intron pum - chr3R_4_9100001 chr3R_9100001 RAL-361 2718 chr3R 9101818 9101857 chr3R 9101945 9102005 7 145 26.0 30.5 28.2 0.2 187 chr3R 9101818 intron pum - chr3R 9101912 intron pum - chr3R 9102005 intron pum - chr3R_7_9100001 chr3R_9100001 RAL-361 2719 chr3R 9108815 9108882 chr3R 9108941 9109008 21 126 6.5 8.0 7.2 2.6 193 chr3R 9108815 intron pum - chr3R 9108912 intron pum - chr3R 9109008 intron pum - chr3R_21_9105001 chr3R_9105001 RAL-361 2720 chr3R 9141100 9141179 chr3R 9141234 9141318 23 136 6.0 3.0 4.5 4.2 218 chr3R 9141100 intron pum - chr3R 9141209 intron pum - chr3R 9141318 intron pum - chr3R_23_9140001 chr3R_9140001 RAL-361 2721 chr3R 9142995 9143056 chr3R 9143186 9143244 12 188 17.0 23.5 20.2 0.6 249 chr3R 9142995 intron pum - chr3R 9143120 intron pum - chr3R 9143244 intron pum - chr3R_12_9140001 chr3R_9140001 RAL-361 2722 chr3R 9149649 9149707 chr3R 9149762 9149837 9 123 16.5 12.0 14.2 0.6 188 chr3R 9149649 intron pum - chr3R 9149743 intron pum - chr3R 9149837 intron pum - chr3R_9_9145001 chr3R_9145001 RAL-361 2723 chr3R 9251391 9251447 chr3R 9251521 9251577 11 128 27.5 31.5 29.5 0.4 186 chr3R 9251391 3` UTR CG8420 + chr3R 9251484 intergenic CG8420 +,St2 + chr3R 9251577 intergenic CG8420 +,St2 + chr3R_11_9250001 chr3R_9250001 RAL-361 2724 chr3R 9278748 9278769 chr3R 9284052 9284077 Rt1a 9 5309 18.5 15.5 17.0 0.5 5329 chr3R 9278748 intergenic not near genes chr3R 9281412 intergenic not near genes chr3R 9284077 intergenic not near genes chr3R_9_9280001 chr3R_9280001 RAL-361 2725 chr3R 9278772 9278801 chr3R 9284051 9284111 Rt1a 18 5304 8.0 15.0 11.5 1.4 5339 chr3R 9278772 intergenic not near genes chr3R 9281442 intergenic not near genes chr3R 9284111 intergenic not near genes chr3R_18_9280001 chr3R_9280001 RAL-361 2726 chr3R 9294970 9295038 chr3R 9295098 9295166 12 127 58.5 67.0 62.8 0.2 196 chr3R 9294970 3` UTR CG8861 - chr3R 9295068 3` UTR CG8861 - chr3R 9295166 3` UTR CG8861 - chr3R_12_9295001 chr3R_9295001 RAL-361 2727 chr3R 9295461 9295475 chr3R 9295698 9295707 5 235 48.5 31.0 39.8 0.1 246 chr3R 9295461 exon CG8861 - chr3R 9295584 intron CG8861 - chr3R 9295707 exon CG8861 - chr3R_5_9295001 chr3R_9295001 RAL-361 2728 chr3R 9295476 9295492 chr3R 9295692 9295716 7 223 45.0 32.0 38.5 0.2 240 chr3R 9295476 exon CG8861 - chr3R 9295596 intron CG8861 - chr3R 9295716 exon CG8861 - chr3R_7_9295001 chr3R_9295001 RAL-361 2729 chr3R 9313275 9313335 chr3R 9313412 9313468 18 134 17.5 19.5 18.5 0.9 193 chr3R 9313275 intron CG8861 - chr3R 9313372 intron CG8861 - chr3R 9313468 intron CG8861 - chr3R_18_9310001 chr3R_9310001 RAL-361 2730 chr3R 9319536 9319593 chr3R 9320021 9320078 jockey 27 485 8.0 14.0 11.0 2.2 542 chr3R 9319536 intron CG8861 - chr3R 9319807 intron CG8861 - chr3R 9320078 intron CG8861 - chr3R_27_9315001 chr3R_9315001 RAL-361 2731 chr3R 9339928 9339965 chr3R 9340056 9340088 7 127 27.5 21.5 24.5 0.3 160 chr3R 9339928 3` UTR CR43301 - chr3R 9340008 intergenic CR43301 - chr3R 9340088 intergenic CR43301 - chr3R_7_9340001 chr3R_9340001 RAL-361 2732 chr3R 9361812 9361836 chr3R 9362103 9362126 pogo 15 291 10.5 18.5 14.5 1.0 314 chr3R 9361812 3` UTR CG45050 + chr3R 9361969 3` UTR CG45050 + chr3R 9362126 3` UTR CG45050 + chr3R_15_9360001 chr3R_9360001 RAL-361 2733 chr3R 9362939 9363006 chr3R 9363078 9363145 19 139 23.5 27.5 25.5 0.7 206 chr3R 9362939 3` UTR CG45050 + chr3R 9363042 intergenic CG45050 +,CG18473 + chr3R 9363145 intergenic CG45050 +,CG18473 + chr3R_19_9360001 chr3R_9360001 RAL-361 2734 chr3R 9379094 9379165 chr3R 9379226 9379297 6 132 31.0 33.5 32.2 0.2 203 chr3R 9379094 intron FER - chr3R 9379196 intron FER - chr3R 9379297 intron FER - chr3R_6_9375001 chr3R_9375001 RAL-361 2735 chr3R 9390496 9390561 chr3R 9390630 9390695 19 134 21.5 23.5 22.5 0.8 199 chr3R 9390496 intron FER - chr3R 9390596 intron FER - chr3R 9390695 intron FER - chr3R_19_9390001 chr3R_9390001 RAL-361 2736 chr3R 9456860 9456924 chr3R 9457101 9457165 14 240 16.0 19.0 17.5 0.8 305 chr3R 9456860 3` UTR GstZ2 - chr3R 9457012 3` UTR GstZ2 - chr3R 9457165 3` UTR GstZ2 - chr3R_14_9455001 chr3R_9455001 RAL-361 2737 chr3R 9599766 9599833 chr3R 9599990 9600035 9 222 21.0 14.5 17.8 0.5 269 chr3R 9599766 intron CG8312 + chr3R 9599900 intron CG8312 + chr3R 9600035 intron CG8312 + chr3R_9_9595001 chr3R_9595001 RAL-361 2738 chr3R 9601422 9601491 chr3R 9601590 9601659 18 167 24.0 25.0 24.5 0.7 237 chr3R 9601422 intron CG8312 + chr3R 9601540 intron CG8312 + chr3R 9601659 intron CG8312 + chr3R_18_9600001 chr3R_9600001 RAL-361 2739 chr3R 9610799 9610869 chr3R 9610991 9611061 24 191 17.0 18.5 17.8 1.3 262 chr3R 9610799 intron CG8312 + chr3R 9610930 intron CG8312 + chr3R 9611061 intron CG8312 + chr3R_24_9610001 chr3R_9610001 RAL-361 2740 chr3R 9611838 9611852 chr3R 9611960 9611984 4 130 17.0 0.5 8.8 0.4 146 chr3R 9611838 intron CG8312 + chr3R 9611911 intron CG8312 + chr3R 9611984 intron CG8312 + chr3R_4_9610001 chr3R_9610001 RAL-361 2741 chr3R 9618261 9618274 chr3R 9618342 9618381 4 109 16.5 22.0 19.2 0.2 120 chr3R 9618261 intron CG8312 + chr3R 9618321 intron CG8312 + chr3R 9618381 intron CG8312 + chr3R_4_9615001 chr3R_9615001 RAL-361 2742 chr3R 9620956 9620956 chr3R 21907535 21907536 5 12286579 24.0 35.5 29.8 0.2 12286580 chr3R 9620956 intron CG8312 + chr3R 15764246 intergenic not near genes chr3R 21907536 intergenic CG6678 + chr3R_5_15760001 chr3R_15760001 RAL-361 2743 chr3R 9644541 9644609 chr3R 9644672 9644740 19 130 20.5 24.0 22.2 0.8 199 chr3R 9644541 intron Dh44 + chr3R 9644640 intron Dh44 + chr3R 9644740 intron Dh44 + chr3R_19_9640001 chr3R_9640001 RAL-361 2744 chr3R 9699934 9699993 chr3R 9700073 9700132 1360 18 139 26.0 26.5 26.2 0.7 198 chr3R 9699934 intron Unc-115a - chr3R 9700033 intron Unc-115a - chr3R 9700132 intron Unc-115a - chr3R_18_9700001 chr3R_9700001 RAL-361 2745 chr3R 9739880 9739939 chr3R 9741876 9741895 12 1988 30.5 40.5 35.5 0.3 2015 chr3R 9739880 5` UTR CG12950 - chr3R 9740888 intergenic Pnn + chr3R 9741895 exon Pnn + chr3R_12_9740001 chr3R_9740001 RAL-361 2746 chr3R 9739246 9739307 chr3R 9742263 9742324 7 3017 46.5 46.5 46.5 0.1 3078 chr3R 9739246 intron CG12950 - chr3R 9740785 intergenic Pnn + chr3R 9742324 3` UTR Pnn + chr3R_7_9740001 chr3R_9740001 RAL-361 2747 chr3R 9829362 9829432 chr3R 9829497 9829567 14 135 28.0 33.5 30.8 0.4 205 chr3R 9829362 intron Teh1 - chr3R 9829464 intron Teh1 - chr3R 9829567 intron Teh1 - chr3R_14_9825001 chr3R_9825001 RAL-361 2748 chr3R 9838135 9838141 chr3R 9850639 9850646 mdg1 4 12505 4.5 11.0 7.8 0.5 12511 chr3R 9838135 intron Teh1 - chr3R 9844390 intron Teh1 - chr3R 9850646 intron Teh1 - chr3R_4_9840001 chr3R_9840001 RAL-361 2749 chr3R 9898738 9898819 chr3R 9898880 9898961 51 141 8.5 5.5 7.0 6.4 223 chr3R 9898738 intron Glut4EF + chr3R 9898850 intron Glut4EF + chr3R 9898961 intron Glut4EF + chr3R_51_9895001 chr3R_9895001 RAL-361 2750 chr3R 9920798 9920809 chr3R 9920945 9920956 4 147 10.5 16.0 13.2 0.3 158 chr3R 9920798 intron Glut4EF + chr3R 9920877 intron Glut4EF + chr3R 9920956 intron Glut4EF + chr3R_4_9920001 chr3R_9920001 RAL-361 2751 chr3R 9922792 9922822 chr3R 9922918 9922942 5 125 24.0 28.0 26.0 0.2 150 chr3R 9922792 intron Glut4EF + chr3R 9922867 intron Glut4EF + chr3R 9922942 intron Glut4EF + chr3R_5_9920001 chr3R_9920001 RAL-361 2752 chr3R 9994005 9994028 chr3R 9997290 9997321 4 3288 44.0 44.0 44.0 0.1 3316 chr3R 9994005 3` UTR Glut4EF + chr3R 9995663 exon Gr85a - chr3R 9997321 5` UTR Spn85F + chr3R_4_9995001 chr3R_9995001 RAL-361 2753 chr3R 10029607 10029667 chr3R 10029746 10029776 12 136 29.5 23.5 26.5 0.4 169 chr3R 10029607 intron Mical - chr3R 10029692 intron Mical - chr3R 10029776 intron Mical - chr3R_12_10025001 chr3R_10025001 RAL-361 2754 chr3R 10034396 10034449 chr3R 10034525 10034543 13 126 41.5 37.0 39.2 0.3 147 chr3R 10034396 intron Mical - chr3R 10034470 intron Mical - chr3R 10034543 intron Mical - chr3R_13_10030001 chr3R_10030001 RAL-361 2755 chr3R 10087003 10087077 chr3R 10087192 10087246 14 188 10.0 14.5 12.2 1.1 243 chr3R 10087003 intron CR45054 + chr3R 10087124 intron CR45054 + chr3R 10087246 intron CR45054 + chr3R_14_10085001 chr3R_10085001 RAL-361 2756 chr3R 10095728 10095788 chr3R 10095958 10096017 17 230 24.5 22.0 23.2 0.7 289 chr3R 10095728 5` UTR CR43459 + chr3R 10095872 5` UTR CR43459 + chr3R 10096017 5` UTR CR43459 + chr3R_17_10095001 chr3R_10095001 RAL-361 2757 chr3R 10130091 10130154 chr3R 10130259 10130322 25 168 29.5 33.5 31.5 0.8 231 chr3R 10130091 intron tws - chr3R 10130206 intron tws - chr3R 10130322 intron tws - chr3R_25_10130001 chr3R_10130001 RAL-361 2758 chr3R 10146515 10146531 chr3R 10147013 10147029 6 498 18.5 22.0 20.2 0.3 514 chr3R 10146515 intron Invadolysin + chr3R 10146772 intron Invadolysin + chr3R 10147029 intron Invadolysin + chr3R_6_10145001 chr3R_10145001 RAL-361 2759 chr3R 10181948 10182015 chr3R 10182128 10182195 16 178 11.0 13.5 12.2 1.2 247 chr3R 10181948 intron CG12814 - chr3R 10182072 intron CG12814 - chr3R 10182195 intron CG12814 - chr3R_16_10180001 chr3R_10180001 RAL-361 2760 chr3R 10183055 10183094 chr3R 10183182 10183220 18 126 11.0 4.5 7.8 2.0 165 chr3R 10183055 intron CG12814 - chr3R 10183138 intron CG12814 - chr3R 10183220 intron CG12814 - chr3R_18_10180001 chr3R_10180001 RAL-361 2761 chr3R 10196911 10196928 chr3R 10202948 10202965 297 6 6037 16.0 8.5 12.2 0.5 6054 chr3R 10196911 exon Syn + chr3R 10199938 intron Syn + chr3R 10202965 intron Syn + chr3R_6_10195001 chr3R_10195001 RAL-361 2762 chr3R 10231737 10231807 chr3R 10237364 10237434 mdg3 28 5626 4.5 6.5 5.5 4.3 5697 chr3R 10231737 intron CG42795 + chr3R 10234586 intron CG42795 + chr3R 10237434 intron CG42795 + chr3R_28_10230001 chr3R_10230001 RAL-361 2763 chr3R 10239100 10239178 chr3R 10239232 10239289 9 129 26.5 28.0 27.2 0.3 189 chr3R 10239100 intron CG42795 + chr3R 10239194 intron CG42795 + chr3R 10239289 intron CG42795 + chr3R_9_10235001 chr3R_10235001 RAL-361 2764 chr3R 10255303 10255385 chr3R 10260816 10260875 I-element 20 5498 9.5 5.5 7.5 2.4 5572 chr3R 10255303 intergenic CG3999 +,Sirt6 - chr3R 10258089 intron Sirt6 - chr3R 10260875 exon Sirt6 - chr3R_20_10255001 chr3R_10255001 RAL-361 2765 chr3R 10277094 10277140 chr3R 10277224 10277270 6 130 27.0 25.0 26.0 0.2 176 chr3R 10277094 intron CG43143 + chr3R 10277182 intron CG43143 + chr3R 10277270 intron CG43143 + chr3R_6_10275001 chr3R_10275001 RAL-361 2766 chr3R 10286982 10287004 chr3R 10287215 10287237 4 232 25.5 26.0 25.8 0.1 255 chr3R 10286982 intron CG43143 + chr3R 10287110 intron CG43143 + chr3R 10287237 intron CG43143 + chr3R_4_10285001 chr3R_10285001 RAL-361 2767 chr3R 10401850 10401922 chr3R 10402090 10402143 16 237 28.0 27.0 27.5 0.6 293 chr3R 10401850 exon mthl11 + chr3R 10401996 exon mthl11 + chr3R 10402143 exon mthl11 + chr3R_16_10400001 chr3R_10400001 RAL-361 2768 chr3R 10531820 10531867 chr3R 10531951 10531961 15 128 10.0 1.5 5.8 2.2 141 chr3R 10531820 intron hth - chr3R 10531890 intron hth - chr3R 10531961 intron hth - chr3R_15_10530001 chr3R_10530001 RAL-361 2769 chr3R 10535289 10535331 chr3R 10535432 10535474 11 143 9.0 4.0 6.5 1.5 185 chr3R 10535289 intron hth - chr3R 10535382 intron hth - chr3R 10535474 intron hth - chr3R_11_10535001 chr3R_10535001 RAL-361 2770 chr3R 10593426 10593451 chr3R 10593558 10593586 13 134 13.0 19.5 16.2 0.8 160 chr3R 10593426 intron hth - chr3R 10593506 intron hth - chr3R 10593586 exon hth - chr3R_13_10590001 chr3R_10590001 RAL-361 2771 chr3R 10593453 10593457 chr3R 10593517 10593590 6 122 11.5 9.0 10.2 0.5 137 chr3R 10593453 intron hth - chr3R 10593522 intron hth - chr3R 10593590 exon hth - chr3R_6_10590001 chr3R_10590001 RAL-361 2772 chr3R 10627589 10627625 chr3R 10627747 10627783 13 158 2.5 11.5 7.0 1.6 194 chr3R 10627589 intergenic not near genes chr3R 10627686 intergenic not near genes chr3R 10627783 intergenic not near genes chr3R_13_10625001 chr3R_10625001 RAL-361 2773 chr3R 10646059 10646123 chr3R 10646259 10646287 19 198 22.0 22.0 22.0 0.8 228 chr3R 10646059 intergenic CR44018 + chr3R 10646173 intergenic CR44018 + chr3R 10646287 intergenic not near genes chr3R_19_10645001 chr3R_10645001 RAL-361 2774 chr3R 10681939 10682014 chr3R 10682094 10682172 10 156 13.0 5.5 9.2 1.0 233 chr3R 10681939 intergenic not near genes chr3R 10682056 intergenic not near genes chr3R 10682172 intergenic CR44230 + chr3R_10_10680001 chr3R_10680001 RAL-361 2775 chr3R 10724924 10724970 chr3R 10725052 10725086 10 127 18.5 21.5 20.0 0.5 162 chr3R 10724924 intergenic not near genes chr3R 10725005 intergenic not near genes chr3R 10725086 intergenic not near genes chr3R_10_10725001 chr3R_10725001 RAL-361 2776 chr3R 10727613 10727674 chr3R 10727723 10727804 34 127 9.5 4.5 7.0 4.2 191 chr3R 10727613 intergenic not near genes chr3R 10727708 intergenic not near genes chr3R 10727804 intergenic not near genes chr3R_34_10725001 chr3R_10725001 RAL-361 2777 chr3R 10730904 10730972 chr3R 10731248 10731316 14 344 17.0 19.5 18.2 0.7 412 chr3R 10730904 intergenic not near genes chr3R 10731110 intergenic not near genes chr3R 10731316 intergenic not near genes chr3R_14_10730001 chr3R_10730001 RAL-361 2778 chr3R 10738032 10738088 chr3R 10738160 10738223 18 141 6.5 5.0 5.8 2.6 191 chr3R 10738032 3` UTR TkR86C - chr3R 10738128 3` UTR TkR86C - chr3R 10738223 exon TkR86C - chr3R_18_10735001 chr3R_10735001 RAL-361 2779 chr3R 10752660 10752743 chr3R 10752805 10752858 13 134 12.5 10.0 11.2 1.1 198 chr3R 10752660 intergenic not near genes chr3R 10752759 intergenic not near genes chr3R 10752858 intergenic CG14691 - chr3R_13_10750001 chr3R_10750001 RAL-361 2780 chr3R 10804151 10804197 chr3R 10811733 10811779 17.6 8 7582 17.5 21.5 19.5 0.4 7628 chr3R 10804151 intergenic CG14692 - chr3R 10807965 intergenic not near genes chr3R 10811779 3` UTR CG14693 - chr3R_8_10805001 chr3R_10805001 RAL-361 2781 chr3R 10868604 10868617 chr3R 10868671 10868739 5 87 19.0 21.5 20.2 0.2 135 chr3R 10868604 5` UTR SelR - chr3R 10868672 intergenic SelR -,Tsp86D + chr3R 10868739 5` UTR Tsp86D + chr3R_5_10865001 chr3R_10865001 RAL-361 2782 chr3R 10870838 10870877 chr3R 10870957 10871008 11 130 32.5 26.5 29.5 0.4 170 chr3R 10870838 intergenic Fdh -,Tsp86D + chr3R 10870923 3` UTR Fdh - chr3R 10871008 exon Fdh - chr3R_11_10870001 chr3R_10870001 RAL-361 2783 chr3R 10886820 10886895 chr3R 10886951 10887025 11 129 25.0 30.5 27.8 0.4 205 chr3R 10886820 intron Leash + chr3R 10886922 intron Leash + chr3R 10887025 intron Leash + chr3R_11_10885001 chr3R_10885001 RAL-361 2784 chr3R 10919639 10919715 chr3R 10919767 10919843 39 128 4.5 5.5 5.0 6.5 204 chr3R 10919639 intergenic not near genes chr3R 10919741 intergenic not near genes chr3R 10919843 intergenic not near genes chr3R_39_10915001 chr3R_10915001 RAL-361 2785 chr3R 10920008 10920076 chr3R 10920136 10920204 24 128 11.0 12.0 11.5 1.9 196 chr3R 10920008 intergenic not near genes chr3R 10920106 intergenic not near genes chr3R 10920204 intergenic not near genes chr3R_24_10920001 chr3R_10920001 RAL-361 2786 chr3R 10957857 10957884 chr3R 10963252 10963323 Rt1c 11 5415 5.0 3.0 4.0 2.2 5466 chr3R 10957857 intergenic not near genes chr3R 10960590 intergenic not near genes chr3R 10963323 intergenic not near genes chr3R_11_10960001 chr3R_10960001 RAL-361 2787 chr3R 10963513 10963576 chr3R 10963657 10963720 11 144 26.0 31.5 28.8 0.4 207 chr3R 10963513 intergenic not near genes chr3R 10963616 intergenic not near genes chr3R 10963720 intergenic not near genes chr3R_11_10960001 chr3R_10960001 RAL-361 2788 chr3R 10971452 10971494 chr3R 10971591 10971633 8 138 26.5 32.5 29.5 0.3 181 chr3R 10971452 intergenic not near genes chr3R 10971542 intergenic not near genes chr3R 10971633 intergenic not near genes chr3R_8_10970001 chr3R_10970001 RAL-361 2789 chr3R 10988550 10988617 chr3R 10988750 10988794 7 186 22.0 17.0 19.5 0.3 244 chr3R 10988550 intron CG34114 + chr3R 10988672 intron CG34114 + chr3R 10988794 intron CG34114 + chr3R_7_10985001 chr3R_10985001 RAL-361 2790 chr3R 10993961 10994252 chr3R 10994112 10994381 18 146 27.0 20.5 23.8 0.7 420 chr3R 10993961 intron CG34114 + chr3R 10994171 intron CG34114 + chr3R 10994381 intron CG34114 + chr3R_18_10990001 chr3R_10990001 RAL-361 2791 chr3R 10994267 10994309 chr3R 10994366 10994438 9 123 22.5 18.5 20.5 0.4 171 chr3R 10994267 intron CG34114 + chr3R 10994352 intron CG34114 + chr3R 10994438 intron CG34114 + chr3R_9_10990001 chr3R_10990001 RAL-361 2792 chr3R 11024154 11024187 chr3R 11024272 11024333 7 135 18.5 17.0 17.8 0.4 179 chr3R 11024154 intron CG34114 + chr3R 11024244 intron CG34114 + chr3R 11024333 intron CG34114 + chr3R_7_11020001 chr3R_11020001 RAL-361 2793 chr3R 11040270 11040338 chr3R 11040674 11040742 14 403 20.5 10.0 15.2 0.9 472 chr3R 11040270 intron CG34114 + chr3R 11040506 intron CG34114 + chr3R 11040742 intron CG34114 + chr3R_14_11040001 chr3R_11040001 RAL-361 2794 chr3R 11052042 11052060 chr3R 11052171 11052189 5 129 24.0 26.5 25.2 0.2 147 chr3R 11052042 intergenic not near genes chr3R 11052116 intergenic not near genes chr3R 11052189 intergenic not near genes chr3R_5_11050001 chr3R_11050001 RAL-361 2795 chr3R 11054523 11054604 chr3R 11054670 11054751 8 146 22.5 21.0 21.8 0.4 228 chr3R 11054523 intergenic not near genes chr3R 11054637 intergenic not near genes chr3R 11054751 intergenic not near genes chr3R_8_11050001 chr3R_11050001 RAL-361 2796 chr3R 11056848 11056892 chr3R 11056975 11057020 10 128 10.5 0.0 5.2 1.6 172 chr3R 11056848 intergenic not near genes chr3R 11056934 intergenic not near genes chr3R 11057020 intergenic not near genes chr3R_10_11055001 chr3R_11055001 RAL-361 2797 chr3R 11065550 11065615 chr3R 11071246 11071317 297 11 5696 4.0 7.0 5.5 1.7 5767 chr3R 11065550 intergenic not near genes chr3R 11068434 intergenic not near genes chr3R 11071317 intergenic not near genes chr3R_11_11065001 chr3R_11065001 RAL-361 2798 chr3R 11075759 11075823 chr3R 11075886 11075950 13 127 29.0 24.5 26.8 0.5 191 chr3R 11075759 intergenic not near genes chr3R 11075854 intergenic not near genes chr3R 11075950 intergenic not near genes chr3R_13_11075001 chr3R_11075001 RAL-361 2799 chr3R 11078909 11078969 chr3R 11079039 11079099 12 123 27.5 22.5 25.0 0.5 190 chr3R 11078909 intergenic not near genes chr3R 11079004 intergenic not near genes chr3R 11079099 intergenic not near genes chr3R_12_11075001 chr3R_11075001 RAL-361 2800 chr3R 11104221 11104266 chr3R 11104351 11104396 6 130 26.5 26.5 26.5 0.2 175 chr3R 11104221 intergenic not near genes chr3R 11104308 intergenic not near genes chr3R 11104396 intergenic not near genes chr3R_6_11100001 chr3R_11100001 RAL-361 2801 chr3R 11122794 11122863 chr3R 11122921 11122990 4 127 23.5 28.0 25.8 0.1 196 chr3R 11122794 intergenic not near genes chr3R 11122892 intergenic not near genes chr3R 11122990 intergenic not near genes chr3R_4_11120001 chr3R_11120001 RAL-361 2802 chr3R 11132286 11132351 chr3R 11132468 11132532 13 177 14.5 26.5 20.5 0.6 246 chr3R 11132286 intergenic not near genes chr3R 11132409 intergenic not near genes chr3R 11132532 intergenic not near genes chr3R_13_11130001 chr3R_11130001 RAL-361 2803 chr3R 11151074 11151139 chr3R 11151319 11151384 15 240 19.0 8.5 13.8 1.0 310 chr3R 11151074 3` UTR Ugt86Di - chr3R 11151229 3` UTR Ugt86Di - chr3R 11151384 3` UTR Ugt86Di - chr3R_15_11150001 chr3R_11150001 RAL-361 2804 chr3R 11155004 11155060 chr3R 11155129 11155188 4 126 25.0 28.5 26.8 0.1 184 chr3R 11155004 intron Ugt86Dc + chr3R 11155096 intron Ugt86Dc + chr3R 11155188 intron Ugt86Dc + chr3R_4_11155001 chr3R_11155001 RAL-361 2805 chr3R 11172769 11172818 chr3R 11172910 11172959 13 140 11.0 6.0 8.5 1.4 190 chr3R 11172769 intergenic Ugt35a - chr3R 11172864 intergenic Ugt35a - chr3R 11172959 intergenic Ugt35a -,Ugt86Dj - chr3R_13_11170001 chr3R_11170001 RAL-361 2806 chr3R 11174547 11174613 chr3R 11175307 11175377 9 760 61.5 43.0 52.2 0.2 830 chr3R 11174547 exon Ugt86Dj - chr3R 11174962 intron Ugt86Dj - chr3R 11175377 exon Ugt86Dj - chr3R_9_11170001 chr3R_11170001 RAL-361 2807 chr3R 11197950 11197971 chr3R 11198099 11198120 10 149 23.0 19.0 21.0 0.5 170 chr3R 11197950 intron cu + chr3R 11198035 intron cu + chr3R 11198120 intron cu + chr3R_10_11195001 chr3R_11195001 RAL-361 2808 chr3R 11197982 11197993 chr3R 11198095 11198142 6 143 20.0 18.5 19.2 0.3 160 chr3R 11197982 intron cu + chr3R 11198062 intron cu + chr3R 11198142 intron cu + chr3R_6_11195001 chr3R_11195001 RAL-361 2809 chr3R 11198000 11198013 chr3R 11198094 11198127 4 123 19.0 18.0 18.5 0.2 127 chr3R 11198000 intron cu + chr3R 11198064 intron cu + chr3R 11198127 intron cu + chr3R_4_11195001 chr3R_11195001 RAL-361 2810 chr3R 11325297 11325340 chr3R 11325442 11325485 6 144 17.0 16.5 16.8 0.3 188 chr3R 11325297 intergenic not near genes chr3R 11325391 intergenic not near genes chr3R 11325485 intergenic not near genes chr3R_6_11325001 chr3R_11325001 RAL-361 2811 chr3R 11379193 11379228 chr3R 11388398 11388433 roo 10 9204 6.5 8.5 7.5 1.2 9240 chr3R 11379193 intron pros + chr3R 11383813 intron pros + chr3R 11388433 intron pros + chr3R_10_11380001 chr3R_11380001 RAL-361 2812 chr3R 11406245 11406319 chr3R 11406372 11406446 39 127 15.0 11.5 13.2 2.7 201 chr3R 11406245 3` UTR pros + chr3R 11406346 3` UTR pros + chr3R 11406446 3` UTR pros + chr3R_39_11405001 chr3R_11405001 RAL-361 2813 chr3R 11443651 11443704 chr3R 11443791 11443846 13 138 25.5 21.0 23.2 0.5 195 chr3R 11443651 intron,intron sals -,CG17230 + chr3R 11443748 intron,intron sals -,CG17230 + chr3R 11443846 intron,intron sals -,CG17230 + chr3R_13_11440001 chr3R_11440001 RAL-361 2814 chr3R 11444021 11444065 chr3R 11444169 11444213 17 148 17.5 29.0 23.2 0.7 192 chr3R 11444021 intron,intron sals -,CG17230 + chr3R 11444117 intron,intron sals -,CG17230 + chr3R 11444213 intron,intron sals -,CG17230 + chr3R_17_11440001 chr3R_11440001 RAL-361 2815 chr3R 11461233 11461299 chr3R 11461363 11461429 12 129 23.5 25.5 24.5 0.5 196 chr3R 11461233 intron CG17230 + chr3R 11461331 intron CG17230 + chr3R 11461429 intron CG17230 + chr3R_12_11460001 chr3R_11460001 RAL-361 2816 chr3R 11476908 11476955 chr3R 11477060 11477107 11 152 18.5 25.0 21.8 0.5 199 chr3R 11476908 intergenic not near genes chr3R 11477008 intergenic not near genes chr3R 11477107 intergenic not near genes chr3R_11_11475001 chr3R_11475001 RAL-361 2817 chr3R 11513833 11513865 chr3R 11513937 11513998 6 126 21.0 26.0 23.5 0.2 165 chr3R 11513833 intergenic not near genes chr3R 11513916 intergenic not near genes chr3R 11513998 intergenic not near genes chr3R_6_11510001 chr3R_11510001 RAL-361 2818 chr3R 11567768 11567816 chr3R 11567907 11567925 6 132 17.5 34.5 26.0 0.2 157 chr3R 11567768 intergenic not near genes chr3R 11567846 intergenic not near genes chr3R 11567925 intergenic not near genes chr3R_6_11565001 chr3R_11565001 RAL-361 2819 chr3R 11612024 11612037 chr3R 11612157 11612165 5 135 19.5 19.5 19.5 0.2 141 chr3R 11612024 intron Jupiter - chr3R 11612094 intron Jupiter - chr3R 11612165 intron Jupiter - chr3R_5_11610001 chr3R_11610001 RAL-361 2820 chr3R 11649098 11649163 chr3R 11649284 11649302 20 182 20.0 19.0 19.5 1.0 204 chr3R 11649098 intron Csk - chr3R 11649200 intron Csk - chr3R 11649302 intron Csk - chr3R_20_11645001 chr3R_11645001 RAL-361 2821 chr3R 11656461 11656526 chr3R 11656591 11656656 24 129 19.5 17.0 18.2 1.2 195 chr3R 11656461 5` UTR CG42327 + chr3R 11656558 5` UTR CG42327 + chr3R 11656656 5` UTR CG42327 + chr3R_24_11655001 chr3R_11655001 RAL-361 2822 chr3R 11670953 11671017 chr3R 11671078 11671145 21 128 21.5 29.5 25.5 0.8 192 chr3R 11670953 exon CG42327 + chr3R 11671049 intron CG42327 + chr3R 11671145 intron CG42327 + chr3R_21_11670001 chr3R_11670001 RAL-361 2823 chr3R 11673887 11673959 chr3R 11674098 11674178 13 218 52.0 46.0 49.0 0.3 291 chr3R 11673887 3` UTR CG42327 + chr3R 11674032 intergenic CG42327 +,CG14715 + chr3R 11674178 intergenic CG14715 +,CG42327 + chr3R_13_11670001 chr3R_11670001 RAL-361 2824 chr3R 11689675 11689741 chr3R 11689807 11689873 18 132 21.5 19.5 20.5 0.8 198 chr3R 11689675 intron CG6908 - chr3R 11689774 exon CG6908 - chr3R 11689873 exon CG6908 - chr3R_18_11685001 chr3R_11685001 RAL-361 2825 chr3R 11689808 11689880 chr3R 11690799 11690839 15 988 23.0 18.0 20.5 0.7 1031 chr3R 11689808 exon CG6908 - chr3R 11690324 intergenic CG18765 -,CG6908 - chr3R 11690839 exon CG18765 - chr3R_15_11690001 chr3R_11690001 RAL-361 2826 chr3R 11694692 11694746 chr3R 11694835 11694882 18 136 0.0 8.5 4.2 3.5 190 chr3R 11694692 intergenic Fer3 - chr3R 11694787 intergenic Fer3 - chr3R 11694882 intergenic not near genes chr3R_18_11690001 chr3R_11690001 RAL-361 2827 chr3R 11708589 11708660 chr3R 11708847 11708918 28 258 24.0 16.5 20.2 1.3 329 chr3R 11708589 intergenic not near genes chr3R 11708754 intergenic not near genes chr3R 11708918 intergenic not near genes chr3R_28_11705001 chr3R_11705001 RAL-361 2828 chr3R 11710169 11710226 chr3R 11710296 11710323 9 118 27.5 31.0 29.2 0.3 154 chr3R 11710169 intergenic not near genes chr3R 11710246 intergenic not near genes chr3R 11710323 intergenic not near genes chr3R_9_11710001 chr3R_11710001 RAL-361 2829 chr3R 11733707 11733766 chr3R 11733868 11733928 13 159 21.5 24.5 23.0 0.5 221 chr3R 11733707 intergenic not near genes chr3R 11733818 intergenic not near genes chr3R 11733928 intergenic not near genes chr3R_13_11730001 chr3R_11730001 RAL-361 2830 chr3R 11734131 11734183 chr3R 11734284 11734341 9 162 36.5 30.5 33.5 0.3 210 chr3R 11734131 intergenic not near genes chr3R 11734236 intergenic not near genes chr3R 11734341 intergenic not near genes chr3R_9_11730001 chr3R_11730001 RAL-361 2831 chr3R 11757689 11757746 chr3R 11757840 11757896 15 150 22.5 21.0 21.8 0.7 207 chr3R 11757689 intron Lk6 - chr3R 11757792 intron Lk6 - chr3R 11757896 intron Lk6 - chr3R_15_11755001 chr3R_11755001 RAL-361 2832 chr3R 11811059 11811065 chr3R 11811205 11811211 4 146 27.0 23.0 25.0 0.2 152 chr3R 11811059 5` UTR ClC-a - chr3R 11811135 5` UTR ClC-a - chr3R 11811211 intron ClC-a - chr3R_4_11810001 chr3R_11810001 RAL-361 2833 chr3R 11811067 11811122 chr3R 11811203 11811212 23 142 17.5 21.5 19.5 1.1 145 chr3R 11811067 5` UTR ClC-a - chr3R 11811140 intron ClC-a - chr3R 11811212 intron ClC-a - chr3R_23_11810001 chr3R_11810001 RAL-361 2834 chr3R 11830940 11830997 chr3R 11831120 11831178 5 180 22.0 22.0 22.0 0.2 238 chr3R 11830940 intron CG6959 - chr3R 11831059 intron CG6959 - chr3R 11831178 intron CG6959 - chr3R_5_11830001 chr3R_11830001 RAL-361 2835 chr3R 11834139 11834185 chr3R 11834255 11834318 10 129 27.5 36.0 31.8 0.3 179 chr3R 11834139 intron CG6959 - chr3R 11834228 intron CG6959 - chr3R 11834318 intron CG6959 - chr3R_10_11830001 chr3R_11830001 RAL-361 2836 chr3R 11840011 11840085 chr3R 11840157 11840225 7 140 15.0 19.5 17.2 0.4 214 chr3R 11840011 intron CG6959 - chr3R 11840118 intron CG6959 - chr3R 11840225 intron CG6959 - chr3R_7_11840001 chr3R_11840001 RAL-361 2837 chr3R 11841021 11841050 chr3R 11846259 11846286 BS 16 5237 14.0 11.5 12.8 1.2 5265 chr3R 11841021 intron CG6959 - chr3R 11843654 intron CG6959 - chr3R 11846286 intron CG6959 - chr3R_16_11840001 chr3R_11840001 RAL-361 2838 chr3R 11841051 11841087 chr3R 11846252 11846302 BS 16 5233 9.0 8.0 8.5 1.7 5251 chr3R 11841051 intron CG6959 - chr3R 11843676 intron CG6959 - chr3R 11846302 intron CG6959 - chr3R_16_11840001 chr3R_11840001 RAL-361 2839 chr3R 11909322 11909334 chr3R 11909452 11909464 5 129 31.0 17.5 24.2 0.2 142 chr3R 11909322 intron Cad87A - chr3R 11909393 intron Cad87A - chr3R 11909464 intron Cad87A - chr3R_5_11905001 chr3R_11905001 RAL-361 2840 chr3R 11909352 11909393 chr3R 11909451 11909471 6 101 22.0 17.5 19.8 0.3 119 chr3R 11909352 intron Cad87A - chr3R 11909412 intron Cad87A - chr3R 11909471 intron Cad87A - chr3R_6_11905001 chr3R_11905001 RAL-361 2841 chr3R 11914348 11914391 chr3R 11914483 11914526 13 135 27.0 29.0 28.0 0.4 178 chr3R 11914348 intron Cad87A - chr3R 11914437 intron Cad87A - chr3R 11914526 intron Cad87A - chr3R_13_11910001 chr3R_11910001 RAL-361 2842 chr3R 11916398 11916449 chr3R 11916527 11916578 9 126 21.0 16.5 18.8 0.5 180 chr3R 11916398 intron Cad87A - chr3R 11916488 intron Cad87A - chr3R 11916578 intron Cad87A - chr3R_9_11915001 chr3R_11915001 RAL-361 2843 chr3R 11957805 11957881 chr3R 11958138 11958214 S-element 20 332 6.0 0.0 3.0 5.0 409 chr3R 11957805 intergenic not near genes chr3R 11958010 intergenic not near genes chr3R 11958214 intergenic not near genes chr3R_20_11955001 chr3R_11955001 RAL-361 2844 chr3R 11990620 11990680 chr3R 11990758 11990818 6 138 35.0 35.5 35.2 0.2 198 chr3R 11990620 intron mfas - chr3R 11990719 intron mfas - chr3R 11990818 intron mfas - chr3R_6_11990001 chr3R_11990001 RAL-361 2845 chr3R 11998918 11998964 chr3R 11999083 11999129 11 165 28.0 26.5 27.2 0.4 211 chr3R 11998918 intron Tk - chr3R 11999024 intron Tk - chr3R 11999129 intron Tk - chr3R_11_11995001 chr3R_11995001 RAL-361 2846 chr3R 12022836 12022910 chr3R 12025063 12025137 pogo 34 2227 8.0 12.5 10.2 3.0 2301 chr3R 12022836 intergenic not near genes chr3R 12023986 intergenic not near genes chr3R 12025137 intergenic not near genes chr3R_34_12020001 chr3R_12020001 RAL-361 2847 chr3R 12045126 12045202 chr3R 12045252 12045328 26 125 10.0 6.5 8.2 2.8 202 chr3R 12045126 intergenic not near genes chr3R 12045227 intergenic not near genes chr3R 12045328 intergenic not near genes chr3R_26_12045001 chr3R_12045001 RAL-361 2848 chr3R 12080873 12080894 chr3R 12080969 12080991 7 117 16.0 18.5 17.2 0.4 118 chr3R 12080873 intron CG14741 - chr3R 12080932 intron CG14741 - chr3R 12080991 intron CG14741 - chr3R_7_12080001 chr3R_12080001 RAL-361 2849 chr3R 12102827 12102870 chr3R 12102977 12103021 13 149 15.5 12.5 14.0 0.9 194 chr3R 12102827 intron dpr17 + chr3R 12102924 intron dpr17 + chr3R 12103021 intron dpr17 + chr3R_13_12100001 chr3R_12100001 RAL-361 2850 chr3R 12135468 12135533 chr3R 12135757 12135792 7 280 22.5 19.5 21.0 0.3 324 chr3R 12135468 intergenic not near genes chr3R 12135630 intergenic not near genes chr3R 12135792 intergenic not near genes chr3R_7_12135001 chr3R_12135001 RAL-361 2851 chr3R 12169192 12169220 chr3R 12169320 12169348 5 128 25.5 24.0 24.8 0.2 156 chr3R 12169192 intergenic not near genes chr3R 12169270 intergenic not near genes chr3R 12169348 intergenic not near genes chr3R_5_12165001 chr3R_12165001 RAL-361 2852 chr3R 12170692 12170759 chr3R 12170849 12170889 15 151 15.5 16.0 15.8 0.9 197 chr3R 12170692 intergenic not near genes chr3R 12170790 intergenic not near genes chr3R 12170889 intergenic not near genes chr3R_15_12170001 chr3R_12170001 RAL-361 2853 chr3R 12202252 12202306 chr3R 12202399 12202465 10 156 23.5 23.5 23.5 0.4 213 chr3R 12202252 intergenic not near genes chr3R 12202358 intergenic not near genes chr3R 12202465 intergenic not near genes chr3R_10_12200001 chr3R_12200001 RAL-361 2854 chr3R 12214346 12214364 chr3R 12214487 12214500 6 140 15.0 21.5 18.2 0.3 154 chr3R 12214346 3` UTR CG4848 - chr3R 12214423 3` UTR CG4848 - chr3R 12214500 3` UTR,5` UTR CG4848 -,CG14742 + chr3R_6_12210001 chr3R_12210001 RAL-361 2855 chr3R 12268318 12268378 chr3R 12272429 12272495 13 4113 54.5 51.0 52.8 0.2 4177 chr3R 12268318 intron svp + chr3R 12270406 intron svp + chr3R 12272495 intron svp + chr3R_13_12270001 chr3R_12270001 RAL-361 2856 chr3R 12340831 12340883 chr3R 12341009 12341061 6 178 21.0 21.5 21.2 0.3 230 chr3R 12340831 intergenic not near genes chr3R 12340946 intergenic not near genes chr3R 12341061 intergenic not near genes chr3R_6_12340001 chr3R_12340001 RAL-361 2857 chr3R 12344082 12344156 chr3R 12344209 12344283 24 124 17.0 15.5 16.2 1.4 201 chr3R 12344082 intergenic not near genes chr3R 12344182 intergenic not near genes chr3R 12344283 intergenic not near genes chr3R_24_12340001 chr3R_12340001 RAL-361 2858 chr3R 12392853 12392893 chr3R 12392997 12393043 13 148 28.0 32.5 30.2 0.4 190 chr3R 12392853 intron,5` UTR,3` UTR CG34402 +,CG10096 -,CG10097 - chr3R 12392948 intron,5` UTR,3` UTR CG34402 +,CG10096 -,CG10097 - chr3R 12393043 intron,5` UTR,3` UTR CG34402 +,CG10096 -,CG10097 - chr3R_13_12390001 chr3R_12390001 RAL-361 2859 chr3R 12516019 12516087 chr3R 12516164 12516232 9 145 30.0 31.5 30.8 0.3 213 chr3R 12516019 intron Octbeta3R - chr3R 12516126 intron Octbeta3R - chr3R 12516232 intron Octbeta3R - chr3R_9_12515001 chr3R_12515001 RAL-361 2860 chr3R 12570033 12570065 chr3R 12570168 12570230 21 161 11.0 18.5 14.8 1.3 197 chr3R 12570033 intron Octbeta2R - chr3R 12570132 intron Octbeta2R - chr3R 12570230 intron Octbeta2R - chr3R_21_12570001 chr3R_12570001 RAL-361 2861 chr3R 12598968 12599032 chr3R 12599158 12599207 21 183 18.0 18.0 18.0 1.1 239 chr3R 12598968 intergenic not near genes chr3R 12599088 intergenic not near genes chr3R 12599207 intergenic not near genes chr3R_21_12595001 chr3R_12595001 RAL-361 2862 chr3R 12599343 12599394 chr3R 12599476 12599527 14 133 23.5 22.0 22.8 0.6 184 chr3R 12599343 intergenic not near genes chr3R 12599435 intergenic not near genes chr3R 12599527 intergenic not near genes chr3R_14_12595001 chr3R_12595001 RAL-361 2863 chr3R 12605432 12605446 chr3R 12605566 12605580 9 134 25.5 20.5 23.0 0.4 148 chr3R 12605432 intergenic not near genes chr3R 12605506 intergenic not near genes chr3R 12605580 intergenic not near genes chr3R_9_12605001 chr3R_12605001 RAL-361 2864 chr3R 12606895 12606933 chr3R 12607210 12607234 5 326 25.0 12.0 18.5 0.3 339 chr3R 12606895 intergenic not near genes chr3R 12607064 intergenic not near genes chr3R 12607234 intergenic not near genes chr3R_5_12605001 chr3R_12605001 RAL-361 2865 chr3R 12665814 12665891 chr3R 12665940 12666000 11 115 10.0 8.0 9.0 1.1 186 chr3R 12665814 intron CG14395 + chr3R 12665907 intron CG14395 + chr3R 12666000 intron CG14395 + chr3R_11_12665001 chr3R_12665001 RAL-361 2866 chr3R 12720686 12720746 chr3R 12720906 12720966 13 220 33.5 30.5 32.0 0.4 280 chr3R 12720686 intron Men - chr3R 12720826 intron Men - chr3R 12720966 intron Men - chr3R_13_12720001 chr3R_12720001 RAL-361 2867 chr3R 12725941 12725958 chr3R 12726096 12726113 4 154 21.0 20.0 20.5 0.2 172 chr3R 12725941 intergenic not near genes chr3R 12726027 intergenic not near genes chr3R 12726113 intergenic not near genes chr3R_4_12725001 chr3R_12725001 RAL-361 2868 chr3R 12725962 12725967 chr3R 12726057 12726122 7 137 19.0 15.0 17.0 0.4 160 chr3R 12725962 intergenic not near genes chr3R 12726042 intergenic not near genes chr3R 12726122 intergenic not near genes chr3R_7_12725001 chr3R_12725001 RAL-361 2869 chr3R 12733432 12733451 chr3R 12733559 12733578 5 127 26.5 15.5 21.0 0.2 146 chr3R 12733432 intergenic not near genes chr3R 12733505 intergenic not near genes chr3R 12733578 intergenic not near genes chr3R_5_12730001 chr3R_12730001 RAL-361 2870 chr3R 12733455 12733487 chr3R 12733553 12733614 12 119 17.0 14.5 15.8 0.7 159 chr3R 12733455 intergenic not near genes chr3R 12733534 intergenic not near genes chr3R 12733614 intergenic not near genes chr3R_12_12730001 chr3R_12730001 RAL-361 2871 chr3R 12763069 12763138 chr3R 12763207 12763265 7 133 12.5 20.0 16.2 0.4 196 chr3R 12763069 intron beat-Vc - chr3R 12763167 intron beat-Vc - chr3R 12763265 intron beat-Vc - chr3R_7_12760001 chr3R_12760001 RAL-361 2872 chr3R 12780048 12780272 chr3R 12780180 12780434 14 142 25.0 27.5 26.2 0.5 386 chr3R 12780048 intron beat-Vc - chr3R 12780241 intron beat-Vc - chr3R 12780434 intron beat-Vc - chr3R_14_12780001 chr3R_12780001 RAL-361 2873 chr3R 12787889 12787955 chr3R 12788022 12788088 14 132 9.0 6.0 7.5 1.6 199 chr3R 12787889 intergenic not near genes chr3R 12787988 intergenic not near genes chr3R 12788088 intergenic not near genes chr3R_14_12785001 chr3R_12785001 RAL-361 2874 chr3R 12818623 12818686 chr3R 12818759 12818813 8 135 22.0 22.0 22.0 0.3 190 chr3R 12818623 intergenic not near genes chr3R 12818718 intergenic not near genes chr3R 12818813 intergenic not near genes chr3R_8_12815001 chr3R_12815001 RAL-361 2875 chr3R 12818980 12819021 chr3R 12819113 12819138 6 130 30.5 29.0 29.8 0.2 158 chr3R 12818980 intergenic not near genes chr3R 12819059 intergenic not near genes chr3R 12819138 intergenic not near genes chr3R_6_12815001 chr3R_12815001 RAL-361 2876 chr3R 12825050 12825106 chr3R 12825189 12825245 10 139 18.0 21.0 19.5 0.5 195 chr3R 12825050 intergenic not near genes chr3R 12825148 intergenic not near genes chr3R 12825245 intergenic not near genes chr3R_10_12825001 chr3R_12825001 RAL-361 2877 chr3R 12858426 12858436 chr3R 12859492 12859502 5 1066 22.5 18.5 20.5 0.2 1076 chr3R 12858426 intron CG10126 - chr3R 12858964 intron CG10126 - chr3R 12859502 intergenic CG10126 - chr3R_5_12855001 chr3R_12855001 RAL-361 2878 chr3R 12858440 12858481 chr3R 12859489 12859547 17 1064 19.0 19.0 19.0 0.8 1107 chr3R 12858440 intron CG10126 - chr3R 12858994 intron CG10126 - chr3R 12859547 intergenic CG10126 - chr3R_17_12855001 chr3R_12855001 RAL-361 2879 chr3R 12864531 12864584 chr3R 12865066 12865119 roo 10 535 4.0 9.5 6.8 1.3 588 chr3R 12864531 intergenic not near genes chr3R 12864825 intergenic not near genes chr3R 12865119 intergenic not near genes chr3R_10_12860001 chr3R_12860001 RAL-361 2880 chr3R 12866439 12866515 chr3R 12866640 12866713 13 197 21.0 22.0 21.5 0.6 274 chr3R 12866439 intergenic not near genes chr3R 12866576 intergenic not near genes chr3R 12866713 intergenic not near genes chr3R_13_12865001 chr3R_12865001 RAL-361 2881 chr3R 12880971 12881039 chr3R 12881106 12881174 12 135 23.0 24.0 23.5 0.5 203 chr3R 12880971 intergenic not near genes chr3R 12881072 intergenic not near genes chr3R 12881174 intergenic not near genes chr3R_12_12880001 chr3R_12880001 RAL-361 2882 chr3R 12882584 12882638 chr3R 12882946 12883015 12 376 18.5 22.5 20.5 0.6 431 chr3R 12882584 intergenic not near genes chr3R 12882800 intergenic not near genes chr3R 12883015 intergenic not near genes chr3R_12_12880001 chr3R_12880001 RAL-361 2883 chr3R 12920107 12920164 chr3R 12925360 12925417 copia 19 5251 14.5 8.0 11.2 1.6 5310 chr3R 12920107 intron beat-Vb + chr3R 12922762 intron beat-Vb + chr3R 12925417 intron beat-Vb + chr3R_19_12920001 chr3R_12920001 RAL-361 2884 chr3R 12931168 12931245 chr3R 12931292 12931372 7 121 30.5 27.0 28.8 0.2 204 chr3R 12931168 intron,3` UTR beat-Vb +,CR44236 - chr3R 12931270 intron,3` UTR beat-Vb +,CR44236 - chr3R 12931372 intron beat-Vb + chr3R_7_12930001 chr3R_12930001 RAL-361 2885 chr3R 12941866 12941935 chr3R 12942010 12942079 10 142 19.0 16.5 17.8 0.5 213 chr3R 12941866 intergenic not near genes chr3R 12941972 intergenic not near genes chr3R 12942079 intergenic not near genes chr3R_10_12940001 chr3R_12940001 RAL-361 2886 chr3R 12942609 12942683 chr3R 12942761 12942835 15 152 17.0 13.5 15.2 0.9 226 chr3R 12942609 intergenic not near genes chr3R 12942722 intergenic not near genes chr3R 12942835 intergenic not near genes chr3R_15_12940001 chr3R_12940001 RAL-361 2887 chr3R 12943929 12943999 chr3R 12944066 12944135 20 137 21.5 19.5 20.5 0.9 206 chr3R 12943929 intergenic not near genes chr3R 12944032 intergenic not near genes chr3R 12944135 intergenic not near genes chr3R_20_12940001 chr3R_12940001 RAL-361 2888 chr3R 12944506 12944574 chr3R 12944639 12944707 15 133 16.5 15.0 15.8 0.9 201 chr3R 12944506 intergenic not near genes chr3R 12944606 intergenic not near genes chr3R 12944707 intergenic not near genes chr3R_15_12940001 chr3R_12940001 RAL-361 2889 chr3R 12972507 12972580 chr3R 12972696 12972769 14 188 26.5 27.5 27.0 0.5 262 chr3R 12972507 intron CG7381 - chr3R 12972638 intron CG7381 - chr3R 12972769 intron CG7381 - chr3R_14_12970001 chr3R_12970001 RAL-361 2890 chr3R 12974665 12974738 chr3R 12974868 12974920 13 201 32.5 28.0 30.2 0.4 255 chr3R 12974665 intron CG7381 - chr3R 12974792 intron CG7381 - chr3R 12974920 intron CG7381 - chr3R_13_12970001 chr3R_12970001 RAL-361 2891 chr3R 12993099 12993311 chr3R 12993233 12993438 22 129 33.5 31.0 32.2 0.7 339 chr3R 12993099 exon yellow-f - chr3R 12993268 intergenic yellow-f -,yellow-f2 - chr3R 12993438 3` UTR yellow-f2 - chr3R_22_12990001 chr3R_12990001 RAL-361 2892 chr3R 13059918 13059969 chr3R 13060156 13060214 16 245 8.0 6.5 7.2 2.0 296 chr3R 13059918 intron sim + chr3R 13060066 intron sim + chr3R 13060214 intron sim + chr3R_16_13060001 chr3R_13060001 RAL-361 2893 chr3R 13064729 13064794 chr3R 13064878 13064942 8 148 18.0 23.5 20.8 0.4 213 chr3R 13064729 intron sim + chr3R 13064836 intron sim + chr3R 13064942 intron sim + chr3R_8_13060001 chr3R_13060001 RAL-361 2894 chr3R 13066954 13067130 chr3R 13067091 13067256 33 133 8.0 3.5 5.8 4.9 302 chr3R 13066954 intron sim + chr3R 13067105 intron sim + chr3R 13067256 intron sim + chr3R_33_13065001 chr3R_13065001 RAL-361 2895 chr3R 13075314 13075368 chr3R 13075445 13075499 16 131 14.5 15.5 15.0 1.0 185 chr3R 13075314 intron sim + chr3R 13075406 intron sim + chr3R 13075499 intron sim + chr3R_16_13075001 chr3R_13075001 RAL-361 2896 chr3R 13103979 13104000 chr3R 13104106 13104127 4 127 9.5 4.5 7.0 0.5 148 chr3R 13103979 intron timeout + chr3R 13104053 intron timeout + chr3R 13104127 intron timeout + chr3R_4_13100001 chr3R_13100001 RAL-361 2897 chr3R 13120722 13120793 chr3R 13120847 13120920 23 124 7.0 7.5 7.2 2.8 198 chr3R 13120722 intron timeout + chr3R 13120821 intron timeout + chr3R 13120920 intron timeout + chr3R_23_13120001 chr3R_13120001 RAL-361 2898 chr3R 13135787 13135839 chr3R 13138002 13138054 pogo 18 2215 10.0 5.0 7.5 2.1 2267 chr3R 13135787 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13136920 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13138054 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_18_13135001 chr3R_13135001 RAL-361 2899 chr3R 13142989 13143060 chr3R 13148615 13148686 mdg3 24 5620 6.0 4.5 5.2 3.9 5697 chr3R 13142989 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13145838 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13148686 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_24_13145001 chr3R_13145001 RAL-361 2900 chr3R 13164496 13164554 chr3R 13165627 13165685 13 1131 41.0 36.0 38.5 0.3 1189 chr3R 13164496 intergenic not near genes chr3R 13165090 intergenic not near genes chr3R 13165685 intergenic not near genes chr3R_13_13165001 chr3R_13165001 RAL-361 2901 chr3R 13163300 13163369 chr3R 13165863 13165932 15 2565 41.0 45.0 43.0 0.3 2632 chr3R 13163300 exon timeout + chr3R 13164616 intergenic not near genes chr3R 13165932 intergenic not near genes chr3R_15_13160001 chr3R_13160001 RAL-361 2902 chr3R 13173401 13173461 chr3R 13173533 13173588 11 130 17.5 13.0 15.2 0.7 187 chr3R 13173401 intergenic not near genes chr3R 13173494 intergenic not near genes chr3R 13173588 intergenic not near genes chr3R_11_13170001 chr3R_13170001 RAL-361 2903 chr3R 13191554 13191624 chr3R 13191695 13191765 6 141 8.0 3.0 5.5 0.9 211 chr3R 13191554 intergenic CG8141 + chr3R 13191660 5` UTR CG8141 + chr3R 13191765 exon CG8141 + chr3R_6_13190001 chr3R_13190001 RAL-361 2904 chr3R 13192686 13192755 chr3R 13192825 13192894 11 133 28.0 30.5 29.2 0.4 208 chr3R 13192686 intergenic CG8141 + chr3R 13192790 intergenic CG8141 + chr3R 13192894 intergenic CG8141 + chr3R_11_13190001 chr3R_13190001 RAL-361 2905 chr3R 13195907 13195977 chr3R 13196052 13196122 14 145 27.0 26.0 26.5 0.5 215 chr3R 13195907 intergenic not near genes chr3R 13196014 intergenic not near genes chr3R 13196122 intergenic not near genes chr3R_14_13195001 chr3R_13195001 RAL-361 2906 chr3R 13199226 13199285 chr3R 13199359 13199418 8 131 27.0 24.5 25.8 0.3 192 chr3R 13199226 intergenic not near genes chr3R 13199322 intergenic not near genes chr3R 13199418 intergenic not near genes chr3R_8_13195001 chr3R_13195001 RAL-361 2907 chr3R 13205361 13205420 chr3R 13205492 13205551 12 130 21.0 18.0 19.5 0.6 190 chr3R 13205361 intergenic not near genes chr3R 13205456 intergenic not near genes chr3R 13205551 intergenic not near genes chr3R_12_13205001 chr3R_13205001 RAL-361 2908 chr3R 13241340 13241406 chr3R 13241544 13241610 9 204 27.5 29.5 28.5 0.3 270 chr3R 13241340 intron Ace - chr3R 13241475 intron Ace - chr3R 13241610 intron Ace - chr3R_9_13240001 chr3R_13240001 RAL-361 2909 chr3R 13249563 13249593 chr3R 13249727 13249757 14 163 14.5 1.5 8.0 1.6 194 chr3R 13249563 intron Ace - chr3R 13249660 intron Ace - chr3R 13249757 intron Ace - chr3R_14_13245001 chr3R_13245001 RAL-361 2910 chr3R 13252258 13252275 chr3R 13252384 13252401 5 126 34.5 30.5 32.5 0.1 143 chr3R 13252258 intron Ace - chr3R 13252330 intron Ace - chr3R 13252401 intron Ace - chr3R_5_13250001 chr3R_13250001 RAL-361 2911 chr3R 13314058 13314118 chr3R 13318895 13318956 Doc 21 4837 6.0 10.0 8.0 2.3 4898 chr3R 13314058 intergenic not near genes chr3R 13316507 intergenic not near genes chr3R 13318956 intergenic CG45080 - chr3R_21_13315001 chr3R_13315001 RAL-361 2912 chr3R 13347626 13347684 chr3R 13347749 13347774 6 112 6.5 12.0 9.2 0.6 148 chr3R 13347626 intergenic not near genes chr3R 13347700 intergenic not near genes chr3R 13347774 intergenic not near genes chr3R_6_13345001 chr3R_13345001 RAL-361 2913 chr3R 13348953 13349025 chr3R 13349079 13349151 6 124 9.5 8.5 9.0 0.6 198 chr3R 13348953 intergenic not near genes chr3R 13349052 intergenic not near genes chr3R 13349151 intergenic not near genes chr3R_6_13345001 chr3R_13345001 RAL-361 2914 chr3R 13363188 13363224 chr3R 13363321 13363357 4 133 15.0 12.0 13.5 0.3 169 chr3R 13363188 intron poly - chr3R 13363272 intron poly - chr3R 13363357 intron poly - chr3R_4_13360001 chr3R_13360001 RAL-361 2915 chr3R 13378795 13378865 chr3R 13378936 13379006 10 141 21.5 20.5 21.0 0.5 211 chr3R 13378795 intron CG9813 - chr3R 13378900 intron CG9813 - chr3R 13379006 exon CG9813 - chr3R_10_13375001 chr3R_13375001 RAL-361 2916 chr3R 13391239 13391294 chr3R 13391376 13391431 11 137 26.5 30.5 28.5 0.4 192 chr3R 13391239 intron CCHa2 - chr3R 13391335 intron CCHa2 - chr3R 13391431 intron CCHa2 - chr3R_11_13390001 chr3R_13390001 RAL-361 2917 chr3R 13413725 13413776 chr3R 13413873 13413925 5 149 23.0 24.0 23.5 0.2 200 chr3R 13413725 intron yellow-e - chr3R 13413825 intron yellow-e - chr3R 13413925 intron yellow-e - chr3R_5_13410001 chr3R_13410001 RAL-361 2918 chr3R 13418618 13418682 chr3R 13418744 13418808 19 126 15.0 17.0 16.0 1.1 190 chr3R 13418618 intergenic not near genes chr3R 13418713 intergenic not near genes chr3R 13418808 intergenic not near genes chr3R_19_13415001 chr3R_13415001 RAL-361 2919 chr3R 13496619 13496658 chr3R 13496711 13496787 10 125 19.5 20.0 19.8 0.5 168 chr3R 13496619 intergenic not near genes chr3R 13496703 intergenic not near genes chr3R 13496787 intergenic not near genes chr3R_10_13495001 chr3R_13495001 RAL-361 2920 chr3R 13505816 13505865 chr3R 13505942 13505991 11 125 7.0 7.0 7.0 1.4 175 chr3R 13505816 intergenic not near genes chr3R 13505904 intergenic not near genes chr3R 13505991 intergenic not near genes chr3R_11_13505001 chr3R_13505001 RAL-361 2921 chr3R 13517214 13517259 chr3R 13520081 13520126 jockey 11 2867 9.0 3.5 6.2 1.5 2912 chr3R 13517214 intergenic not near genes chr3R 13518670 intergenic not near genes chr3R 13520126 intergenic not near genes chr3R_11_13515001 chr3R_13515001 RAL-361 2922 chr3R 13562572 13562631 chr3R 13562729 13562788 17 157 20.0 18.5 19.2 0.8 216 chr3R 13562572 intergenic not near genes chr3R 13562680 intergenic not near genes chr3R 13562788 intergenic not near genes chr3R_17_13560001 chr3R_13560001 RAL-361 2923 chr3R 13580799 13580831 chr3R 13580925 13580958 21 125 16.0 20.0 18.0 1.1 159 chr3R 13580799 intergenic not near genes chr3R 13580878 intergenic not near genes chr3R 13580958 intergenic not near genes chr3R_21_13580001 chr3R_13580001 RAL-361 2924 chr3R 13598037 13598110 chr3R 13598165 13598238 24 128 7.5 9.5 8.5 2.5 201 chr3R 13598037 intergenic not near genes chr3R 13598138 intergenic not near genes chr3R 13598238 intergenic not near genes chr3R_24_13595001 chr3R_13595001 RAL-361 2925 chr3R 13603005 13603073 chr3R 13603146 13603214 22 141 4.0 6.0 5.0 3.7 209 chr3R 13603005 intergenic not near genes chr3R 13603110 intergenic not near genes chr3R 13603214 intergenic not near genes chr3R_22_13600001 chr3R_13600001 RAL-361 2926 chr3R 13611391 13611440 chr3R 13612928 13612977 11 1539 45.0 54.5 49.8 0.2 1586 chr3R 13611391 intergenic CG9757 - chr3R 13612184 exon CG9757 - chr3R 13612977 intergenic not near genes chr3R_11_13610001 chr3R_13610001 RAL-361 2927 chr3R 13635942 13635967 chr3R 13636129 13636154 8 187 30.0 27.0 28.5 0.3 212 chr3R 13635942 3` UTR sqd - chr3R 13636048 3` UTR sqd - chr3R 13636154 3` UTR sqd - chr3R_8_13635001 chr3R_13635001 RAL-361 2928 chr3R 13659744 13659849 chr3R 13659936 13659987 13 159 0.0 0.5 0.2 10.8 243 chr3R 13659744 intron Hrb87F - chr3R 13659866 intron Hrb87F - chr3R 13659987 intron Hrb87F - chr3R_13_13655001 chr3R_13655001 RAL-361 2929 chr3R 13672897 13672968 chr3R 13673025 13673096 27 128 12.5 15.0 13.8 1.8 199 chr3R 13672897 intron Task6 - chr3R 13672996 intron Task6 - chr3R 13673096 intron Task6 - chr3R_27_13670001 chr3R_13670001 RAL-361 2930 chr3R 13693028 13693028 chr3R 21907534 21907536 9 8214507 42.5 36.0 39.2 0.2 8214508 chr3R 13693028 3` UTR flfl + chr3R 17800282 exon CG17803 - chr3R 21907536 intergenic CG6678 + chr3R_9_17800001 chr3R_17800001 RAL-361 2931 chr3R 13722995 13723050 chr3R 13723131 13723186 17 136 16.0 18.5 17.2 0.9 191 chr3R 13722995 intron CG34383 + chr3R 13723090 intron CG34383 + chr3R 13723186 intron CG34383 + chr3R_17_13720001 chr3R_13720001 RAL-361 2932 chr3R 13736713 13736769 chr3R 13736846 13736902 9 133 27.0 22.0 24.5 0.4 189 chr3R 13736713 intron CG34383 + chr3R 13736808 intron CG34383 + chr3R 13736902 intron CG34383 + chr3R_9_13735001 chr3R_13735001 RAL-361 2933 chr3R 13782015 13782085 chr3R 13782146 13782186 27 129 4.5 7.5 6.0 3.9 171 chr3R 13782015 exon CG9286 + chr3R 13782100 intergenic CG9286 +,Dip-B + chr3R 13782186 intergenic Dip-B +,CG9286 + chr3R_27_13780001 chr3R_13780001 RAL-361 2934 chr3R 13815025 13815098 chr3R 13815234 13815307 15 208 28.5 26.0 27.2 0.5 282 chr3R 13815025 intergenic CR43641 +,tal-1A +,tal-2A +,tal-3A +,tal-AA + chr3R 13815166 intergenic CR43641 + chr3R 13815307 5` UTR CR43641 + chr3R_15_13815001 chr3R_13815001 RAL-361 2935 chr3R 13828804 13828833 chr3R 13828940 13828969 7 136 29.0 22.0 25.5 0.3 165 chr3R 13828804 intergenic CR43300 + chr3R 13828886 intergenic CR43300 + chr3R 13828969 intergenic not near genes chr3R_7_13825001 chr3R_13825001 RAL-361 2936 chr3R 13839025 13839099 chr3R 13839233 13839256 18 203 19.5 15.0 17.2 1.0 231 chr3R 13839025 exon CG31495 - chr3R 13839140 exon CG31495 - chr3R 13839256 exon CG31495 - chr3R_18_13835001 chr3R_13835001 RAL-361 2937 chr3R 13850260 13850342 chr3R 13850405 13850480 27 141 0.0 7.5 3.8 5.6 220 chr3R 13850260 intergenic not near genes chr3R 13850370 intergenic not near genes chr3R 13850480 intergenic not near genes chr3R_27_13850001 chr3R_13850001 RAL-361 2938 chr3R 13863638 13863694 chr3R 13863776 13863832 6 138 22.5 20.5 21.5 0.3 194 chr3R 13863638 intergenic not near genes chr3R 13863735 intergenic not near genes chr3R 13863832 intergenic not near genes chr3R_6_13860001 chr3R_13860001 RAL-361 2939 chr3R 13880528 13880568 chr3R 13880678 13880739 5 167 26.5 25.0 25.8 0.2 211 chr3R 13880528 intergenic not near genes chr3R 13880634 intergenic not near genes chr3R 13880739 intergenic not near genes chr3R_5_13880001 chr3R_13880001 RAL-361 2940 chr3R 13894350 13894415 chr3R 13894482 13894546 12 132 18.5 19.0 18.8 0.6 196 chr3R 13894350 intergenic not near genes chr3R 13894448 intergenic not near genes chr3R 13894546 intergenic not near genes chr3R_12_13890001 chr3R_13890001 RAL-361 2941 chr3R 13901036 13901073 chr3R 13901177 13901214 14 141 12.0 7.5 9.8 1.3 178 chr3R 13901036 intergenic not near genes chr3R 13901125 intergenic not near genes chr3R 13901214 intergenic not near genes chr3R_14_13900001 chr3R_13900001 RAL-361 2942 chr3R 13909876 13909907 chr3R 13909998 13910036 4 126 27.0 26.5 26.8 0.1 160 chr3R 13909876 intergenic not near genes chr3R 13909956 intergenic not near genes chr3R 13910036 intergenic not near genes chr3R_4_13905001 chr3R_13905001 RAL-361 2943 chr3R 13915398 13915441 chr3R 13915499 13915572 9 127 21.0 14.5 17.8 0.5 174 chr3R 13915398 intergenic not near genes chr3R 13915485 intergenic not near genes chr3R 13915572 intergenic not near genes chr3R_9_13915001 chr3R_13915001 RAL-361 2944 chr3R 13925944 13926016 chr3R 13926070 13926143 18 123 15.5 17.0 16.2 1.0 199 chr3R 13925944 intergenic not near genes chr3R 13926044 intergenic not near genes chr3R 13926143 intergenic not near genes chr3R_18_13925001 chr3R_13925001 RAL-361 2945 chr3R 13928739 13928765 chr3R 13928877 13928891 11 136 23.5 15.5 19.5 0.5 152 chr3R 13928739 intergenic not near genes chr3R 13928815 intergenic not near genes chr3R 13928891 intergenic not near genes chr3R_11_13925001 chr3R_13925001 RAL-361 2946 chr3R 13941383 13941441 chr3R 13941513 13941571 8 130 33.5 28.5 31.0 0.2 188 chr3R 13941383 intergenic not near genes chr3R 13941477 intergenic not near genes chr3R 13941571 intergenic not near genes chr3R_8_13940001 chr3R_13940001 RAL-361 2947 chr3R 13974474 13974486 chr3R 13974601 13974613 4 127 9.0 11.0 10.0 0.4 139 chr3R 13974474 intron,5` UTR rdx -,CR43460 + chr3R 13974544 intron,5` UTR rdx -,CR43460 + chr3R 13974613 intron,5` UTR rdx -,CR43460 + chr3R_4_13970001 chr3R_13970001 RAL-361 2948 chr3R 13974487 13974495 chr3R 13974614 13974622 8 127 6.5 13.0 9.8 0.7 135 chr3R 13974487 intron,5` UTR rdx -,CR43460 + chr3R 13974554 intron,5` UTR rdx -,CR43460 + chr3R 13974622 intron,5` UTR rdx -,CR43460 + chr3R_8_13970001 chr3R_13970001 RAL-361 2949 chr3R 13975347 13975390 chr3R 13975477 13975520 5 130 25.5 24.0 24.8 0.2 173 chr3R 13975347 intron rdx - chr3R 13975434 intron rdx - chr3R 13975520 intron rdx - chr3R_5_13975001 chr3R_13975001 RAL-361 2950 chr3R 14014297 14014304 chr3R 14014486 14014493 4 189 24.5 33.0 28.8 0.1 196 chr3R 14014297 intron rdx - chr3R 14014395 intron rdx - chr3R 14014493 intron rdx - chr3R_4_14010001 chr3R_14010001 RAL-361 2951 chr3R 14021596 14021673 chr3R 14023466 14023540 S-element 24 1869 7.5 10.5 9.0 2.4 1944 chr3R 14021596 intron rdx - chr3R 14022568 intron rdx - chr3R 14023540 intron rdx - chr3R_24_14020001 chr3R_14020001 RAL-361 2952 chr3R 14029819 14029865 chr3R 14029957 14030003 8 138 26.5 32.5 29.5 0.3 184 chr3R 14029819 intron,intron rdx -,Cyp6d5 + chr3R 14029911 intron,intron rdx -,Cyp6d5 + chr3R 14030003 intron,intron rdx -,Cyp6d5 + chr3R_8_14025001 chr3R_14025001 RAL-361 2953 chr3R 14037539 14037589 chr3R 14037668 14037729 16 131 14.5 11.5 13.0 1.1 190 chr3R 14037539 intergenic not near genes chr3R 14037634 intergenic not near genes chr3R 14037729 intergenic not near genes chr3R_16_14035001 chr3R_14035001 RAL-361 2954 chr3R 14047730 14047771 chr3R 14047871 14047912 12 141 9.0 11.5 10.2 1.1 182 chr3R 14047730 intergenic not near genes chr3R 14047821 intergenic not near genes chr3R 14047912 intergenic not near genes chr3R_12_14045001 chr3R_14045001 RAL-361 2955 chr3R 14048964 14049024 chr3R 14049097 14049154 18 130 10.0 5.5 7.8 2.0 190 chr3R 14048964 intergenic not near genes chr3R 14049059 intergenic not near genes chr3R 14049154 intergenic not near genes chr3R_18_14045001 chr3R_14045001 RAL-361 2956 chr3R 14058081 14058142 chr3R 14058251 14058312 18 168 16.5 5.5 11.0 1.5 231 chr3R 14058081 5` UTR foxo + chr3R 14058196 intron foxo + chr3R 14058312 intron foxo + chr3R_18_14055001 chr3R_14055001 RAL-361 2957 chr3R 14067092 14067152 chr3R 14067221 14067281 13 129 17.5 18.5 18.0 0.7 189 chr3R 14067092 exon foxo + chr3R 14067186 intron foxo + chr3R 14067281 intron foxo + chr3R_13_14065001 chr3R_14065001 RAL-361 2958 chr3R 14091464 14091532 chr3R 14091593 14091661 23 129 33.0 28.5 30.8 0.7 197 chr3R 14091464 intron Npc2b + chr3R 14091562 intron Npc2b + chr3R 14091661 intron Npc2b + chr3R_23_14090001 chr3R_14090001 RAL-361 2959 chr3R 14109034 14109106 chr3R 14109165 14109237 16 131 12.5 14.5 13.5 1.1 203 chr3R 14109034 intergenic CR44237 -,Or88a + chr3R 14109136 intergenic CR44237 -,Or88a + chr3R 14109237 intergenic CR44237 -,Or88a + chr3R_16_14105001 chr3R_14105001 RAL-361 2960 chr3R 14132430 14132446 chr3R 14132593 14132609 4 163 16.5 36.0 26.2 0.1 179 chr3R 14132430 intergenic CG14356 - chr3R 14132520 intergenic CG14356 - chr3R 14132609 intergenic not near genes chr3R_4_14130001 chr3R_14130001 RAL-361 2961 chr3R 14136138 14136211 chr3R 14136265 14136355 6 138 17.0 14.0 15.5 0.4 217 chr3R 14136138 intergenic not near genes chr3R 14136246 intergenic not near genes chr3R 14136355 intergenic not near genes chr3R_6_14135001 chr3R_14135001 RAL-361 2962 chr3R 14168405 14168468 chr3R 14168543 14168584 23 137 18.5 22.5 20.5 1.1 179 chr3R 14168405 3` UTR Dop1R1 - chr3R 14168494 3` UTR Dop1R1 - chr3R 14168584 3` UTR Dop1R1 - chr3R_23_14165001 chr3R_14165001 RAL-361 2963 chr3R 14169689 14169768 chr3R 14169826 14169908 5 137 23.0 27.5 25.2 0.2 219 chr3R 14169689 3` UTR Dop1R1 - chr3R 14169798 3` UTR Dop1R1 - chr3R 14169908 3` UTR Dop1R1 - chr3R_5_14165001 chr3R_14165001 RAL-361 2964 chr3R 14170101 14170165 chr3R 14170241 14170305 8 139 32.5 36.5 34.5 0.2 204 chr3R 14170101 3` UTR Dop1R1 - chr3R 14170203 3` UTR Dop1R1 - chr3R 14170305 3` UTR Dop1R1 - chr3R_8_14170001 chr3R_14170001 RAL-361 2965 chr3R 14174914 14174974 chr3R 14175051 14175111 19 134 23.5 16.0 19.8 0.9 197 chr3R 14174914 3` UTR Dop1R1 - chr3R 14175012 3` UTR Dop1R1 - chr3R 14175111 3` UTR Dop1R1 - chr3R_19_14175001 chr3R_14175001 RAL-361 2966 chr3R 14180777 14180844 chr3R 14185592 14185659 F-element 24 4815 9.5 14.5 12.0 1.8 4882 chr3R 14180777 intron Dop1R1 - chr3R 14183218 intron Dop1R1 - chr3R 14185659 intron Dop1R1 - chr3R_24_14180001 chr3R_14180001 RAL-361 2967 chr3R 14194385 14194443 chr3R 14203584 14203622 roo 9 9197 8.5 6.5 7.5 1.1 9237 chr3R 14194385 intron Dop1R1 - chr3R 14199004 intron Dop1R1 - chr3R 14203622 intron Dop1R1 - chr3R_9_14195001 chr3R_14195001 RAL-361 2968 chr3R 14210186 14210250 chr3R 14210317 14210381 17 131 23.0 21.5 22.2 0.7 195 chr3R 14210186 intron Dop1R1 - chr3R 14210284 intron Dop1R1 - chr3R 14210381 intron Dop1R1 - chr3R_17_14210001 chr3R_14210001 RAL-361 2969 chr3R 14236906 14236933 chr3R 14244454 14244481 Idefix 6 7545 14.0 12.0 13.0 0.4 7575 chr3R 14236906 exon CG43291 - chr3R 14240694 intron CG43291 - chr3R 14244481 exon CG43291 - chr3R_6_14240001 chr3R_14240001 RAL-361 2970 chr3R 14246373 14246408 chr3R 14247893 14247954 jockey 9 1530 8.5 6.5 7.5 1.1 1581 chr3R 14246373 intergenic not near genes chr3R 14247164 intergenic not near genes chr3R 14247954 intergenic not near genes chr3R_9_14245001 chr3R_14245001 RAL-361 2971 chr3R 14248678 14248737 chr3R 14248806 14248865 20 128 6.0 3.5 4.8 3.4 187 chr3R 14248678 intergenic not near genes chr3R 14248772 intergenic not near genes chr3R 14248865 intergenic not near genes chr3R_20_14245001 chr3R_14245001 RAL-361 2972 chr3R 14253655 14253718 chr3R 14253784 14253847 9 129 20.5 20.0 20.2 0.4 192 chr3R 14253655 intron Aats-met - chr3R 14253751 intron Aats-met - chr3R 14253847 intron Aats-met - chr3R_9_14250001 chr3R_14250001 RAL-361 2973 chr3R 14256740 14256769 chr3R 14256876 14256886 10 132 29.5 38.5 34.0 0.3 146 chr3R 14256740 intron,3` UTR Aats-met -,CG43179 + chr3R 14256813 intron,3` UTR Aats-met -,CG43179 + chr3R 14256886 intron,3` UTR Aats-met -,CG43179 + chr3R_10_14255001 chr3R_14255001 RAL-361 2974 chr3R 14327653 14327724 chr3R 14327785 14327856 8 132 26.5 27.0 26.8 0.3 203 chr3R 14327653 3` UTR CG3321 + chr3R 14327754 intergenic CG3321 +,spn-B + chr3R 14327856 intergenic CG3321 +,spn-B + chr3R_8_14325001 chr3R_14325001 RAL-361 2975 chr3R 14339578 14339646 chr3R 14339764 14339842 10 193 31.0 36.0 33.5 0.3 264 chr3R 14339578 intron NK7.1 - chr3R 14339710 intron NK7.1 - chr3R 14339842 intron NK7.1 - chr3R_10_14335001 chr3R_14335001 RAL-361 2976 chr3R 14354779 14354790 chr3R 14355169 14355187 5 396 7.0 21.0 14.0 0.3 408 chr3R 14354779 intron NK7.1 - chr3R 14354983 intron NK7.1 - chr3R 14355187 intron NK7.1 - chr3R_5_14350001 chr3R_14350001 RAL-361 2977 chr3R 14364013 14364081 chr3R 14364139 14364201 16 122 12.5 16.0 14.2 1.1 188 chr3R 14364013 intron NK7.1 - chr3R 14364107 intron NK7.1 - chr3R 14364201 intron NK7.1 - chr3R_16_14360001 chr3R_14360001 RAL-361 2978 chr3R 14365695 14365771 chr3R 14365833 14365909 12 138 35.5 32.5 34.0 0.3 214 chr3R 14365695 intron NK7.1 - chr3R 14365802 intron NK7.1 - chr3R 14365909 intron NK7.1 - chr3R_12_14365001 chr3R_14365001 RAL-361 2979 chr3R 14384525 14384576 chr3R 14384661 14384749 4 164 22.0 23.5 22.8 0.2 224 chr3R 14384525 intergenic not near genes chr3R 14384637 intergenic not near genes chr3R 14384749 intergenic not near genes chr3R_4_14380001 chr3R_14380001 RAL-361 2980 chr3R 14385985 14386037 chr3R 14386099 14386155 15 121 12.5 12.5 12.5 1.1 170 chr3R 14385985 intergenic not near genes chr3R 14386070 intergenic not near genes chr3R 14386155 intergenic not near genes chr3R_15_14385001 chr3R_14385001 RAL-361 2981 chr3R 14389339 14389374 chr3R 14389532 14389567 4 193 27.0 18.5 22.8 0.2 228 chr3R 14389339 intergenic not near genes chr3R 14389453 intergenic not near genes chr3R 14389567 intergenic not near genes chr3R_4_14385001 chr3R_14385001 RAL-361 2982 chr3R 14408500 14408524 chr3R 14408634 14408663 4 138 26.5 21.0 23.8 0.2 163 chr3R 14408500 intron cv-c - chr3R 14408582 intron cv-c - chr3R 14408663 intron cv-c - chr3R_4_14405001 chr3R_14405001 RAL-361 2983 chr3R 14426007 14426069 chr3R 14426161 14426212 17 153 23.0 18.0 20.5 0.8 205 chr3R 14426007 intron cv-c - chr3R 14426110 intron cv-c - chr3R 14426212 intron cv-c - chr3R_17_14425001 chr3R_14425001 RAL-361 2984 chr3R 14440685 14440745 chr3R 14440811 14440871 20 126 17.0 23.5 20.2 0.9 186 chr3R 14440685 intron cv-c - chr3R 14440778 intron cv-c - chr3R 14440871 intron cv-c - chr3R_20_14440001 chr3R_14440001 RAL-361 2985 chr3R 14458838 14458910 chr3R 14458967 14459041 7 130 22.5 25.5 24.0 0.3 203 chr3R 14458838 intron cv-c - chr3R 14458940 intron cv-c - chr3R 14459041 intron cv-c - chr3R_7_14455001 chr3R_14455001 RAL-361 2986 chr3R 14482345 14482418 chr3R 14482471 14482550 9 129 15.0 11.0 13.0 0.6 205 chr3R 14482345 intergenic not near genes chr3R 14482448 intergenic not near genes chr3R 14482550 intergenic not near genes chr3R_9_14480001 chr3R_14480001 RAL-361 2987 chr3R 14486171 14486197 chr3R 14486287 14486296 5 120 20.0 27.0 23.5 0.2 125 chr3R 14486171 intergenic not near genes chr3R 14486234 intergenic not near genes chr3R 14486296 intergenic not near genes chr3R_5_14485001 chr3R_14485001 RAL-361 2988 chr3R 14489220 14489294 chr3R 14489626 14489699 15 405 14.5 17.5 16.0 0.9 479 chr3R 14489220 intergenic not near genes chr3R 14489460 intergenic not near genes chr3R 14489699 intergenic not near genes chr3R_15_14485001 chr3R_14485001 RAL-361 2989 chr3R 14497365 14497404 chr3R 14497496 14497535 10 130 24.5 22.5 23.5 0.4 170 chr3R 14497365 intron CR44177 + chr3R 14497450 intron CR44177 + chr3R 14497535 intron CR44177 + chr3R_10_14495001 chr3R_14495001 RAL-361 2990 chr3R 14499843 14499879 chr3R 14499957 14499995 10 126 17.5 17.0 17.2 0.5 152 chr3R 14499843 intron CR44177 + chr3R 14499919 intron CR44177 + chr3R 14499995 intron CR44177 + chr3R_10_14495001 chr3R_14495001 RAL-361 2991 chr3R 14526290 14526359 chr3R 14526520 14526589 15 230 23.5 24.0 23.8 0.6 299 chr3R 14526290 intron Pde6 - chr3R 14526440 intron Pde6 - chr3R 14526589 intron Pde6 - chr3R_15_14525001 chr3R_14525001 RAL-361 2992 chr3R 14527351 14527408 chr3R 14527478 14527535 17 124 21.0 21.0 21.0 0.8 184 chr3R 14527351 intron Pde6 - chr3R 14527443 intron Pde6 - chr3R 14527535 intron Pde6 - chr3R_17_14525001 chr3R_14525001 RAL-361 2993 chr3R 14533518 14533587 chr3R 14533649 14533725 4 135 0.0 5.5 2.8 1.1 207 chr3R 14533518 intron Pde6 - chr3R 14533622 intron Pde6 - chr3R 14533725 intron Pde6 - chr3R_4_14530001 chr3R_14530001 RAL-361 2994 chr3R 14548987 14549000 chr3R 14549124 14549136 4 137 32.5 18.0 25.2 0.2 149 chr3R 14548987 intron Pde6 - chr3R 14549062 intron Pde6 - chr3R 14549136 intron Pde6 - chr3R_4_14545001 chr3R_14545001 RAL-361 2995 chr3R 14556547 14556603 chr3R 14556680 14556736 8 133 25.5 26.0 25.8 0.3 189 chr3R 14556547 intron Pde6 - chr3R 14556642 intron Pde6 - chr3R 14556736 intron Pde6 - chr3R_8_14555001 chr3R_14555001 RAL-361 2996 chr3R 14560639 14560692 chr3R 14560884 14560937 25 245 0.0 14.0 7.0 3.1 298 chr3R 14560639 intergenic CG14850 + chr3R 14560788 intergenic CG14850 + chr3R 14560937 5` UTR CG14850 + chr3R_25_14560001 chr3R_14560001 RAL-361 2997 chr3R 14563977 14563990 chr3R 14564127 14564140 7 149 0.0 4.5 2.2 2.2 163 chr3R 14563977 intergenic CG8087 - chr3R 14564058 intergenic CG8087 - chr3R 14564140 intergenic CG8087 - chr3R_7_14560001 chr3R_14560001 RAL-361 2998 chr3R 14577915 14577983 chr3R 14578081 14578149 29 165 7.5 10.5 9.0 2.9 234 chr3R 14577915 intron stumps + chr3R 14578032 intron stumps + chr3R 14578149 intron stumps + chr3R_29_14575001 chr3R_14575001 RAL-361 2999 chr3R 14579344 14579372 chr3R 14579463 14579511 5 130 45.5 35.5 40.5 0.1 167 chr3R 14579344 intron stumps + chr3R 14579428 intron stumps + chr3R 14579511 intron stumps + chr3R_5_14575001 chr3R_14575001 RAL-361 3000 chr3R 14603430 14603511 chr3R 14603555 14603613 13 123 18.5 21.0 19.8 0.6 183 chr3R 14603430 intron stumps + chr3R 14603522 intron stumps + chr3R 14603613 intron stumps + chr3R_13_14600001 chr3R_14600001 RAL-361 3001 chr3R 14608421 14608476 chr3R 14608563 14608618 29 142 4.5 14.5 9.5 2.8 197 chr3R 14608421 intergenic stumps + chr3R 14608520 intergenic stumps + chr3R 14608618 intergenic not near genes chr3R_29_14605001 chr3R_14605001 RAL-361 3002 chr3R 14612408 14612433 chr3R 14612561 14612603 7 167 31.0 21.5 26.2 0.3 195 chr3R 14612408 intron CG14853 + chr3R 14612506 intron CG14853 + chr3R 14612603 intron CG14853 + chr3R_7_14610001 chr3R_14610001 RAL-361 3003 chr3R 14615253 14615272 chr3R 14615393 14615412 6 140 24.0 27.5 25.8 0.2 159 chr3R 14615253 intron CG14853 + chr3R 14615332 intron CG14853 + chr3R 14615412 intron CG14853 + chr3R_6_14615001 chr3R_14615001 RAL-361 3004 chr3R 14616982 14617054 chr3R 14617108 14617180 30 124 12.0 10.5 11.2 2.5 198 chr3R 14616982 exon CG14853 + chr3R 14617081 intron CG14853 + chr3R 14617180 exon CG14853 + chr3R_30_14615001 chr3R_14615001 RAL-361 3005 chr3R 14662284 14662335 chr3R 14662415 14662466 7 130 33.5 22.0 27.8 0.2 182 chr3R 14662284 exon Rad17 - chr3R 14662375 intron Rad17 - chr3R 14662466 exon Rad17 - chr3R_7_14660001 chr3R_14660001 RAL-361 3006 chr3R 14672084 14672125 chr3R 14672297 14672338 7 211 30.0 25.0 27.5 0.2 254 chr3R 14672084 intron Meltrin - chr3R 14672211 intron Meltrin - chr3R 14672338 intron Meltrin - chr3R_7_14670001 chr3R_14670001 RAL-361 3007 chr3R 14688107 14688120 chr3R 14688238 14688251 8 131 23.5 15.0 19.2 0.4 144 chr3R 14688107 intron Meltrin - chr3R 14688179 intron Meltrin - chr3R 14688251 intron Meltrin - chr3R_8_14685001 chr3R_14685001 RAL-361 3008 chr3R 14704349 14704395 chr3R 14704476 14704522 6 127 34.0 35.0 34.5 0.2 173 chr3R 14704349 intron kibra - chr3R 14704436 intron kibra - chr3R 14704522 intron kibra - chr3R_6_14700001 chr3R_14700001 RAL-361 3009 chr3R 14726472 14726540 chr3R 14726627 14726695 13 155 17.5 16.5 17.0 0.7 223 chr3R 14726472 intron CG7530 - chr3R 14726584 intron CG7530 - chr3R 14726695 intron CG7530 - chr3R_13_14725001 chr3R_14725001 RAL-361 3010 chr3R 14760498 14760538 chr3R 14760639 14760656 9 138 28.0 19.5 23.8 0.4 158 chr3R 14760498 intron jvl + chr3R 14760577 intron jvl + chr3R 14760656 intron jvl + chr3R_9_14760001 chr3R_14760001 RAL-361 3011 chr3R 14764520 14764580 chr3R 14764668 14764730 14 149 12.0 9.0 10.5 1.2 210 chr3R 14764520 intron jvl + chr3R 14764625 intron jvl + chr3R 14764730 intron jvl + chr3R_14_14760001 chr3R_14760001 RAL-361 3012 chr3R 14779019 14779097 chr3R 14779150 14779212 13 128 14.0 12.5 13.2 0.9 193 chr3R 14779019 intron jvl + chr3R 14779116 intron jvl + chr3R 14779212 intron jvl + chr3R_13_14775001 chr3R_14775001 RAL-361 3013 chr3R 14824490 14824566 chr3R 14824634 14824702 6 139 15.0 10.5 12.8 0.4 212 chr3R 14824490 intron btsz - chr3R 14824596 intron btsz - chr3R 14824702 intron btsz - chr3R_6_14820001 chr3R_14820001 RAL-361 3014 chr3R 14836650 14836726 chr3R 14836785 14836861 30 132 23.0 23.0 23.0 1.2 211 chr3R 14836650 intron btsz - chr3R 14836756 intron btsz - chr3R 14836861 intron btsz - chr3R_30_14835001 chr3R_14835001 RAL-361 3015 chr3R 14876411 14876441 chr3R 14876546 14876576 6 135 29.0 38.0 33.5 0.2 165 chr3R 14876411 intergenic not near genes chr3R 14876494 intergenic not near genes chr3R 14876576 intergenic not near genes chr3R_6_14875001 chr3R_14875001 RAL-361 3016 chr3R 14898439 14898489 chr3R 14898609 14898659 11 170 6.5 6.0 6.2 1.5 220 chr3R 14898439 intergenic Nup93-2 -,CG3817 + chr3R 14898549 intergenic Nup93-2 -,CG3817 + chr3R 14898659 intergenic CG3817 +,Nup93-2 - chr3R_11_14895001 chr3R_14895001 RAL-361 3017 chr3R 14923669 14923729 chr3R 14923795 14923856 14 126 7.0 7.0 7.0 1.8 187 chr3R 14923669 3` UTR CR45598 - chr3R 14923762 intergenic CR45598 - chr3R 14923856 intergenic CR45598 - chr3R_14_14920001 chr3R_14920001 RAL-361 3018 chr3R 14944850 14944894 chr3R 14944981 14945025 13 127 10.5 12.5 11.5 1.0 175 chr3R 14944850 intergenic not near genes chr3R 14944938 intergenic not near genes chr3R 14945025 intergenic not near genes chr3R_13_14940001 chr3R_14940001 RAL-361 3019 chr3R 14970836 14970889 chr3R 14970973 14971026 5 137 30.5 33.0 31.8 0.2 190 chr3R 14970836 intergenic not near genes chr3R 14970931 intergenic not near genes chr3R 14971026 intergenic not near genes chr3R_5_14970001 chr3R_14970001 RAL-361 3020 chr3R 15026291 15026344 chr3R 15026427 15026480 10 136 16.0 22.5 19.2 0.5 189 chr3R 15026291 intergenic not near genes chr3R 15026386 intergenic not near genes chr3R 15026480 intergenic not near genes chr3R_10_15025001 chr3R_15025001 RAL-361 3021 chr3R 15041389 15041422 chr3R 15045207 15045240 Doc 10 3818 12.0 0.0 6.0 1.4 3851 chr3R 15041389 intergenic not near genes chr3R 15043314 intergenic not near genes chr3R 15045240 intergenic not near genes chr3R_10_15040001 chr3R_15040001 RAL-361 3022 chr3R 15041427 15041450 chr3R 15045245 15045268 Doc 10 3818 7.0 7.0 7.0 1.2 3841 chr3R 15041427 intergenic not near genes chr3R 15043348 intergenic not near genes chr3R 15045268 intergenic not near genes chr3R_10_15040001 chr3R_15040001 RAL-361 3023 chr3R 15049404 15049475 chr3R 15049580 15049651 27 175 10.0 9.0 9.5 2.6 247 chr3R 15049404 intergenic not near genes chr3R 15049528 intergenic not near genes chr3R 15049651 intergenic not near genes chr3R_27_15045001 chr3R_15045001 RAL-361 3024 chr3R 15059231 15059477 chr3R 15059475 15059614 BS 17 228 2.5 0.0 1.2 7.7 383 chr3R 15059231 intron dpr9 - chr3R 15059422 intron dpr9 - chr3R 15059614 intron dpr9 - chr3R_17_15055001 chr3R_15055001 RAL-361 3025 chr3R 15060988 15061028 chr3R 15061119 15061159 10 131 23.5 17.0 20.2 0.5 171 chr3R 15060988 intron dpr9 - chr3R 15061074 intron dpr9 - chr3R 15061159 intron dpr9 - chr3R_10_15060001 chr3R_15060001 RAL-361 3026 chr3R 15075823 15075869 chr3R 15075950 15076004 17 132 12.0 4.0 8.0 1.9 181 chr3R 15075823 intron dpr9 - chr3R 15075914 intron dpr9 - chr3R 15076004 intron dpr9 - chr3R_17_15075001 chr3R_15075001 RAL-361 3027 chr3R 15079760 15079838 chr3R 15080051 15080122 pogo 23 289 7.0 3.0 5.0 3.8 362 chr3R 15079760 3` UTR CG6966 - chr3R 15079941 3` UTR CG6966 - chr3R 15080122 3` UTR CG6966 - chr3R_23_15075001 chr3R_15075001 RAL-361 3028 chr3R 15088047 15088105 chr3R 15088195 15088238 14 143 17.0 20.0 18.5 0.7 191 chr3R 15088047 intron CG6966 - chr3R 15088142 intron CG6966 - chr3R 15088238 intron CG6966 - chr3R_14_15085001 chr3R_15085001 RAL-361 3029 chr3R 15088979 15089045 chr3R 15089417 15089483 14 438 20.0 26.0 23.0 0.6 504 chr3R 15088979 intron CG6966 - chr3R 15089231 intron CG6966 - chr3R 15089483 intron CG6966 - chr3R_14_15085001 chr3R_15085001 RAL-361 3030 chr3R 15102446 15102501 chr3R 15109755 15109810 412 18 7309 10.5 7.0 8.8 1.8 7364 chr3R 15102446 intron CG42788 - chr3R 15106128 intron CG42788 - chr3R 15109810 intron CG42788 - chr3R_18_15105001 chr3R_15105001 RAL-361 3031 chr3R 15114872 15114905 chr3R 15114999 15115032 9 126 15.5 8.0 11.8 0.7 160 chr3R 15114872 intron CG42788 - chr3R 15114952 intron CG42788 - chr3R 15115032 intron CG42788 - chr3R_9_15110001 chr3R_15110001 RAL-361 3032 chr3R 15119529 15119557 chr3R 15119622 15119688 8 118 12.5 12.5 12.5 0.6 159 chr3R 15119529 intron CG42788 - chr3R 15119608 intron CG42788 - chr3R 15119688 intron CG42788 - chr3R_8_15115001 chr3R_15115001 RAL-361 3033 chr3R 15127733 15127805 chr3R 15127863 15127935 17 130 9.5 5.5 7.5 2.0 202 chr3R 15127733 intron CG42788 - chr3R 15127834 intron CG42788 - chr3R 15127935 intron CG42788 - chr3R_17_15125001 chr3R_15125001 RAL-361 3034 chr3R 15132028 15132069 chr3R 15135131 15135179 Juan 24 3110 15.0 9.5 12.2 1.8 3151 chr3R 15132028 intergenic CG42788 - chr3R 15133604 intergenic not near genes chr3R 15135179 3` UTR CG6912 - chr3R_24_15130001 chr3R_15130001 RAL-361 3035 chr3R 15143875 15143948 chr3R 15144108 15144181 24 233 26.5 18.5 22.5 1.0 306 chr3R 15143875 intron GlyS - chr3R 15144028 intron GlyS - chr3R 15144181 intron GlyS - chr3R_24_15140001 chr3R_15140001 RAL-361 3036 chr3R 15160581 15160652 chr3R 15160712 15160783 22 130 15.5 17.0 16.2 1.3 202 chr3R 15160581 intron Gyc88E + chr3R 15160682 intron Gyc88E + chr3R 15160783 intron Gyc88E + chr3R_22_15160001 chr3R_15160001 RAL-361 3037 chr3R 15162498 15162563 chr3R 15167316 15167381 F-element 13 4818 8.0 3.5 5.8 1.9 4883 chr3R 15162498 intron Gyc88E + chr3R 15164940 intron Gyc88E + chr3R 15167381 intron Gyc88E + chr3R_13_15160001 chr3R_15160001 RAL-361 3038 chr3R 15167779 15167830 chr3R 15167980 15168037 15 206 13.5 22.0 17.8 0.8 258 chr3R 15167779 intron Gyc88E + chr3R 15167908 intron Gyc88E + chr3R 15168037 intron Gyc88E + chr3R_15_15165001 chr3R_15165001 RAL-361 3039 chr3R 15190609 15190672 chr3R 15190784 15190847 22 175 18.0 22.0 20.0 1.0 238 chr3R 15190609 3` UTR Gyc88E + chr3R 15190728 3` UTR Gyc88E + chr3R 15190847 3` UTR Gyc88E + chr3R_22_15190001 chr3R_15190001 RAL-361 3040 chr3R 15197367 15197420 chr3R 15197530 15197573 9 162 22.5 24.5 23.5 0.4 206 chr3R 15197367 intron CG42542 + chr3R 15197470 intron CG42542 + chr3R 15197573 intron CG42542 + chr3R_9_15195001 chr3R_15195001 RAL-361 3041 chr3R 15212666 15212706 chr3R 15214198 15214238 4 1532 41.0 30.0 35.5 0.1 1572 chr3R 15212666 exon CG6654 - chr3R 15213452 intron CG6654 - chr3R 15214238 intron CG4210 + chr3R_4_15210001 chr3R_15210001 RAL-361 3042 chr3R 15224347 15224397 chr3R 15224513 15224588 11 188 30.5 35.5 33.0 0.3 241 chr3R 15224347 exon CG31344 - chr3R 15224468 intron CG31344 - chr3R 15224588 intron CG31344 - chr3R_11_15220001 chr3R_15220001 RAL-361 3043 chr3R 15320345 15320411 chr3R 15320638 15320704 18 293 17.5 17.0 17.2 1.0 359 chr3R 15320345 intergenic CG44040 +,CG6276 -,ear + chr3R 15320524 exon CG44040 + chr3R 15320704 intergenic CG44040 +,ear + chr3R_18_15320001 chr3R_15320001 RAL-361 3044 chr3R 15407833 15407902 chr3R 15408099 15408168 17 266 9.0 14.5 11.8 1.3 335 chr3R 15407833 intergenic not near genes chr3R 15408000 intergenic not near genes chr3R 15408168 intergenic not near genes chr3R_17_15405001 chr3R_15405001 RAL-361 3045 chr3R 15409810 15409879 chr3R 15410311 15410380 13 499 13.0 24.0 18.5 0.7 570 chr3R 15409810 intron Atx2 + chr3R 15410095 intron Atx2 + chr3R 15410380 intron Atx2 + chr3R_13_15410001 chr3R_15410001 RAL-361 3046 chr3R 15416211 15416222 chr3R 15416341 15416352 5 129 27.5 5.5 16.5 0.3 141 chr3R 15416211 3` UTR Atx2 + chr3R 15416282 3` UTR Atx2 + chr3R 15416352 3` UTR Atx2 + chr3R_5_15415001 chr3R_15415001 RAL-361 3047 chr3R 15416226 15416276 chr3R 15416335 15416384 29 128 14.5 6.5 10.5 2.5 158 chr3R 15416226 3` UTR Atx2 + chr3R 15416305 3` UTR Atx2 + chr3R 15416384 3` UTR Atx2 + chr3R_29_15415001 chr3R_15415001 RAL-361 3048 chr3R 15452234 15452295 chr3R 15452361 15452422 12 127 29.5 27.0 28.2 0.4 188 chr3R 15452234 intron AdamTS-A - chr3R 15452328 intron AdamTS-A - chr3R 15452422 intron AdamTS-A - chr3R_12_15450001 chr3R_15450001 RAL-361 3049 chr3R 15470942 15471003 chr3R 15471070 15471131 16 128 20.0 19.0 19.5 0.8 189 chr3R 15470942 intron AdamTS-A - chr3R 15471036 intron AdamTS-A - chr3R 15471131 intron AdamTS-A - chr3R_16_15470001 chr3R_15470001 RAL-361 3050 chr3R 15592845 15592916 chr3R 15592979 15593048 17 134 8.5 12.5 10.5 1.5 203 chr3R 15592845 intergenic not near genes chr3R 15592946 intergenic not near genes chr3R 15593048 intergenic not near genes chr3R_17_15590001 chr3R_15590001 RAL-361 3051 chr3R 15594654 15594675 chr3R 15594787 15594808 10 131 14.0 25.0 19.5 0.5 154 chr3R 15594654 intergenic not near genes chr3R 15594731 intergenic not near genes chr3R 15594808 intergenic not near genes chr3R_10_15590001 chr3R_15590001 RAL-361 3052 chr3R 15601123 15601189 chr3R 15608695 15608761 412 31 7570 8.0 10.0 9.0 3.1 7638 chr3R 15601123 intergenic not near genes chr3R 15604942 intergenic not near genes chr3R 15608761 intergenic not near genes chr3R_31_15600001 chr3R_15600001 RAL-361 3053 chr3R 15618700 15618764 chr3R 15626224 15626288 blood 25 7524 6.0 10.5 8.2 2.7 7588 chr3R 15618700 intergenic not near genes chr3R 15622494 intergenic not near genes chr3R 15626288 intergenic not near genes chr3R_25_15620001 chr3R_15620001 RAL-361 3054 chr3R 15635169 15635240 chr3R 15635320 15635402 20 158 2.5 7.0 4.8 3.4 233 chr3R 15635169 intergenic CG43335 + chr3R 15635286 intergenic CG43335 + chr3R 15635402 intergenic CG43335 + chr3R_20_15635001 chr3R_15635001 RAL-361 3055 chr3R 15636483 15636501 chr3R 15636709 15636715 5 224 9.0 0.0 4.5 0.9 232 chr3R 15636483 exon CG43335 + chr3R 15636599 intergenic CG43335 + chr3R 15636715 intergenic CG43335 +,CG43336 + chr3R_5_15635001 chr3R_15635001 RAL-361 3056 chr3R 15646751 15646800 chr3R 15646884 15646933 9 133 16.5 21.0 18.8 0.5 182 chr3R 15646751 intergenic not near genes chr3R 15646842 intergenic not near genes chr3R 15646933 intergenic not near genes chr3R_9_15645001 chr3R_15645001 RAL-361 3057 chr3R 15702832 15702893 chr3R 15703055 15703074 11 229 8.0 7.0 7.5 1.3 242 chr3R 15702832 intergenic not near genes chr3R 15702953 intergenic not near genes chr3R 15703074 intergenic not near genes chr3R_11_15700001 chr3R_15700001 RAL-361 3058 chr3R 15718376 15718448 chr3R 15724756 15724828 13 6380 41.5 34.0 37.8 0.3 6452 chr3R 15718376 intergenic not near genes chr3R 15721602 intergenic not near genes chr3R 15724828 intergenic not near genes chr3R_13_15720001 chr3R_15720001 RAL-361 3059 chr3R 15718286 15718322 chr3R 15724891 15724927 7 6606 35.5 42.5 39.0 0.2 6641 chr3R 15718286 intergenic not near genes chr3R 15721606 intergenic not near genes chr3R 15724927 intergenic not near genes chr3R_7_15720001 chr3R_15720001 RAL-361 3060 chr3R 15735193 15735232 chr3R 15739963 15740002 F-element 19 4770 11.0 7.0 9.0 1.9 4809 chr3R 15735193 intergenic not near genes chr3R 15737598 intergenic not near genes chr3R 15740002 intergenic not near genes chr3R_19_15735001 chr3R_15735001 RAL-361 3061 chr3R 15747754 15747826 chr3R 15747887 15747959 21 133 11.5 14.0 12.8 1.5 205 chr3R 15747754 intergenic not near genes chr3R 15747856 intergenic not near genes chr3R 15747959 intergenic not near genes chr3R_21_15745001 chr3R_15745001 RAL-361 3062 chr3R 15773922 15773940 chr3R 15775187 15775192 4 1256 15.5 50.0 32.8 0.1 1270 chr3R 15773922 intergenic CR45206 -,CG4525 + chr3R 15774557 3` UTR,intron CR45206 -,CG4525 + chr3R 15775192 intron,3` UTR CG4525 +,CR45207 - chr3R_4_15770001 chr3R_15770001 RAL-361 3063 chr3R 15779611 15779671 chr3R 15779742 15779802 23 131 10.0 7.5 8.8 2.3 191 chr3R 15779611 intergenic CG5614 + chr3R 15779706 intergenic CG5614 + chr3R 15779802 intergenic CG5614 + chr3R_23_15775001 chr3R_15775001 RAL-361 3064 chr3R 15785573 15785635 chr3R 15785694 15785766 10 127 26.0 29.5 27.8 0.3 193 chr3R 15785573 intergenic not near genes chr3R 15785670 intergenic not near genes chr3R 15785766 intergenic not near genes chr3R_10_15785001 chr3R_15785001 RAL-361 3065 chr3R 15790088 15790111 chr3R 15790246 15790269 11 158 42.0 27.0 34.5 0.3 181 chr3R 15790088 exon c(3)G - chr3R 15790178 exon c(3)G - chr3R 15790269 exon c(3)G - chr3R_11_15790001 chr3R_15790001 RAL-361 3066 chr3R 15790112 15790134 chr3R 15790243 15790292 9 155 39.0 26.0 32.5 0.3 180 chr3R 15790112 exon c(3)G - chr3R 15790202 intron c(3)G - chr3R 15790292 exon c(3)G - chr3R_9_15790001 chr3R_15790001 RAL-361 3067 chr3R 15790162 15790393 chr3R 15790385 15790647 26 299 32.5 33.5 33.0 0.8 485 chr3R 15790162 exon c(3)G - chr3R 15790404 exon c(3)G - chr3R 15790647 exon c(3)G - chr3R_26_15790001 chr3R_15790001 RAL-361 3068 chr3R 15790795 15790800 chr3R 15790961 15790966 4 166 55.5 37.5 46.5 0.1 171 chr3R 15790795 exon c(3)G - chr3R 15790880 exon c(3)G - chr3R 15790966 exon c(3)G - chr3R_4_15790001 chr3R_15790001 RAL-361 3069 chr3R 15790804 15790821 chr3R 15790957 15790987 7 164 50.0 37.5 43.8 0.2 183 chr3R 15790804 exon c(3)G - chr3R 15790896 intron c(3)G - chr3R 15790987 exon c(3)G - chr3R_7_15790001 chr3R_15790001 RAL-361 3070 chr3R 15790833 15790863 chr3R 15790953 15791029 16 163 44.5 35.5 40.0 0.4 196 chr3R 15790833 exon c(3)G - chr3R 15790931 intron c(3)G - chr3R 15791029 exon c(3)G - chr3R_16_15790001 chr3R_15790001 RAL-361 3071 chr3R 15844056 15844131 chr3R 15844204 15844279 31 148 7.0 7.5 7.2 3.8 223 chr3R 15844056 exon spn-E + chr3R 15844168 3` UTR spn-E + chr3R 15844279 3` UTR spn-E + chr3R_31_15840001 chr3R_15840001 RAL-361 3072 chr3R 15868905 15868932 chr3R 15869033 15869060 4 128 27.0 24.5 25.8 0.1 155 chr3R 15868905 intron CG31183 - chr3R 15868982 intron CG31183 - chr3R 15869060 intron CG31183 - chr3R_4_15865001 chr3R_15865001 RAL-361 3073 chr3R 15891621 15891687 chr3R 15892063 15892129 17 439 17.5 12.5 15.0 1.1 508 chr3R 15891621 intron CG14877 - chr3R 15891875 intron CG14877 - chr3R 15892129 intron CG14877 - chr3R_17_15890001 chr3R_15890001 RAL-361 3074 chr3R 15892611 15892679 chr3R 15892741 15892810 23 131 20.5 23.5 22.0 1.0 199 chr3R 15892611 intron CG14877 - chr3R 15892710 intron CG14877 - chr3R 15892810 intron CG14877 - chr3R_23_15890001 chr3R_15890001 RAL-361 3075 chr3R 15924878 15924955 chr3R 15925016 15925093 5 138 2.5 4.0 3.2 1.2 215 chr3R 15924878 intron CG4221 + chr3R 15924986 intron CG4221 + chr3R 15925093 intron CG4221 + chr3R_5_15920001 chr3R_15920001 RAL-361 3076 chr3R 15937376 15937447 chr3R 15937513 15937584 12 129 22.0 16.0 19.0 0.6 208 chr3R 15937376 intron Sap47 + chr3R 15937480 intron Sap47 + chr3R 15937584 intron Sap47 + chr3R_12_15935001 chr3R_15935001 RAL-361 3077 chr3R 15984465 15984521 chr3R 15984617 15984673 12 152 33.0 24.5 28.8 0.4 208 chr3R 15984465 intergenic not near genes chr3R 15984569 intergenic not near genes chr3R 15984673 intergenic not near genes chr3R_12_15980001 chr3R_15980001 RAL-361 3078 chr3R 16004906 16004948 chr3R 16005033 16005082 5 133 30.0 27.5 28.8 0.2 176 chr3R 16004906 3` UTR CR42839 - chr3R 16004994 3` UTR CR42839 - chr3R 16005082 3` UTR CR42839 - chr3R_5_16000001 chr3R_16000001 RAL-361 3079 chr3R 16013111 16013158 chr3R 16013255 16013300 5 142 30.5 33.0 31.8 0.2 189 chr3R 16013111 intron GATAe + chr3R 16013206 intron GATAe + chr3R 16013300 intron GATAe + chr3R_5_16010001 chr3R_16010001 RAL-361 3080 chr3R 16033363 16033439 chr3R 16033494 16033570 31 131 5.5 8.0 6.8 4.0 207 chr3R 16033363 intron pnr + chr3R 16033466 intron pnr + chr3R 16033570 intron pnr + chr3R_31_16030001 chr3R_16030001 RAL-361 3081 chr3R 16034085 16034145 chr3R 16034218 16034278 10 130 26.0 26.0 26.0 0.4 193 chr3R 16034085 intron pnr + chr3R 16034182 intron pnr + chr3R 16034278 intron pnr + chr3R_10_16030001 chr3R_16030001 RAL-361 3082 chr3R 16105948 16105973 chr3R 16107160 16107219 12 1233 34.0 21.5 27.8 0.4 1271 chr3R 16105948 intergenic Akt1 + chr3R 16106584 intergenic not near genes chr3R 16107219 intergenic not near genes chr3R_12_16105001 chr3R_16105001 RAL-361 3083 chr3R 16098867 16098942 chr3R 16106366 16106441 25 7499 53.5 37.5 45.5 0.5 7574 chr3R 16098867 intergenic Mhcl -,Akt1 + chr3R 16102654 exon Akt1 + chr3R 16106441 intergenic not near genes chr3R_25_16100001 chr3R_16100001 RAL-361 3084 chr3R 16181979 16182033 chr3R 16182152 16182206 7 173 36.5 32.5 34.5 0.2 227 chr3R 16181979 intron CG8927 + chr3R 16182092 intron CG8927 + chr3R 16182206 intron CG8927 + chr3R_7_16180001 chr3R_16180001 RAL-361 3085 chr3R 16189362 16189438 chr3R 16189822 16189898 invader4 16 460 28.0 30.0 29.0 0.5 536 chr3R 16189362 intron sra + chr3R 16189630 intron sra + chr3R 16189898 intron sra + chr3R_16_16185001 chr3R_16185001 RAL-361 3086 chr3R 16195510 16195529 chr3R 16195781 16195800 6 271 32.0 22.5 27.2 0.2 290 chr3R 16195510 intron sra + chr3R 16195655 intron sra + chr3R 16195800 intron sra + chr3R_6_16195001 chr3R_16195001 RAL-361 3087 chr3R 16195537 16195578 chr3R 16195777 16195849 17 264 26.5 20.5 23.5 0.7 312 chr3R 16195537 intron sra + chr3R 16195693 intron sra + chr3R 16195849 intron sra + chr3R_17_16195001 chr3R_16195001 RAL-361 3088 chr3R 16210791 16210839 chr3R 16210927 16210975 12 136 11.0 18.5 14.8 0.8 184 chr3R 16210791 intergenic not near genes chr3R 16210883 intergenic not near genes chr3R 16210975 intergenic not near genes chr3R_12_16210001 chr3R_16210001 RAL-361 3089 chr3R 16225050 16225113 chr3R 16225185 16225248 25 134 21.5 17.5 19.5 1.2 198 chr3R 16225050 intergenic not near genes chr3R 16225149 intergenic not near genes chr3R 16225248 intergenic tara + chr3R_25_16225001 chr3R_16225001 RAL-361 3090 chr3R 16226760 16226773 chr3R 16226888 16226901 9 128 11.5 13.5 12.5 0.7 141 chr3R 16226760 intron tara + chr3R 16226830 intron tara + chr3R 16226901 intron tara + chr3R_9_16225001 chr3R_16225001 RAL-361 3091 chr3R 16241742 16241808 chr3R 16242055 16242121 23 313 24.5 23.5 24.0 0.9 379 chr3R 16241742 intron tara + chr3R 16241932 intron tara + chr3R 16242121 intron tara + chr3R_23_16240001 chr3R_16240001 RAL-361 3092 chr3R 16246474 16246557 chr3R 16246600 16246683 17 126 6.5 5.5 6.0 2.4 209 chr3R 16246474 intron tara + chr3R 16246578 intron tara + chr3R 16246683 intron tara + chr3R_17_16245001 chr3R_16245001 RAL-361 3093 chr3R 16260769 16260949 chr3R 16260900 16261097 12 144 22.5 24.0 23.2 0.5 328 chr3R 16260769 intergenic tara + chr3R 16260933 intergenic bor - chr3R 16261097 intergenic bor - chr3R_12_16260001 chr3R_16260001 RAL-361 3094 chr3R 16264073 16264129 chr3R 16264248 16264304 9 174 26.5 31.0 28.8 0.3 231 chr3R 16264073 5` UTR bor - chr3R 16264188 intergenic bor -,asun + chr3R 16264304 5` UTR asun + chr3R_9_16260001 chr3R_16260001 RAL-361 3095 chr3R 16357637 16357685 chr3R 16357958 16358006 12 321 18.0 20.0 19.0 0.6 369 chr3R 16357637 3` UTR CG17931 - chr3R 16357822 3` UTR CG17931 - chr3R 16358006 3` UTR CG17931 - chr3R_12_16355001 chr3R_16355001 RAL-361 3096 chr3R 16374251 16374323 chr3R 16374418 16374490 18 167 19.0 18.0 18.5 0.9 239 chr3R 16374251 intergenic ss - chr3R 16374370 intergenic ss - chr3R 16374490 3` UTR ss - chr3R_18_16370001 chr3R_16370001 RAL-361 3097 chr3R 16472537 16472584 chr3R 16472663 16472702 15 122 15.5 20.5 18.0 0.8 165 chr3R 16472537 intergenic Gyc-89Da + chr3R 16472620 5` UTR Gyc-89Da + chr3R 16472702 5` UTR Gyc-89Da + chr3R_15_16470001 chr3R_16470001 RAL-361 3098 chr3R 16480998 16481062 chr3R 16481127 16481191 15 128 15.5 17.0 16.2 0.9 193 chr3R 16480998 3` UTR Gyc-89Db + chr3R 16481094 intergenic Gyc-89Db +,Dhfr + chr3R 16481191 5` UTR Dhfr + chr3R_15_16480001 chr3R_16480001 RAL-361 3099 chr3R 16519888 16519901 chr3R 16520031 16520044 5 143 29.0 24.5 26.8 0.2 156 chr3R 16519888 intron CG42342 + chr3R 16519966 intron CG42342 + chr3R 16520044 intron CG42342 + chr3R_5_16515001 chr3R_16515001 RAL-361 3100 chr3R 16519905 16519928 chr3R 16520022 16520071 4 136 25.5 24.5 25.0 0.2 166 chr3R 16519905 intron CG42342 + chr3R 16519988 intron CG42342 + chr3R 16520071 intron CG42342 + chr3R_4_16515001 chr3R_16515001 RAL-361 3101 chr3R 16548736 16548807 chr3R 16548879 16548950 5 143 26.5 28.5 27.5 0.2 214 chr3R 16548736 intron CG42342 + chr3R 16548843 intron CG42342 + chr3R 16548950 intron CG42342 + chr3R_5_16545001 chr3R_16545001 RAL-361 3102 chr3R 16578114 16578180 chr3R 16578250 16578316 13 132 20.5 20.5 20.5 0.6 202 chr3R 16578114 intron Scp2 - chr3R 16578215 intron Scp2 - chr3R 16578316 intron Scp2 - chr3R_13_16575001 chr3R_16575001 RAL-361 3103 chr3R 16582867 16582887 chr3R 16582990 16583016 7 128 9.5 4.0 6.8 0.9 149 chr3R 16582867 intron Scp2 - chr3R 16582942 intron Scp2 - chr3R 16583016 intron Scp2 - chr3R_7_16580001 chr3R_16580001 RAL-361 3104 chr3R 16582889 16582918 chr3R 16582989 16583019 6 110 6.0 4.0 5.0 1.0 130 chr3R 16582889 intron Scp2 - chr3R 16582954 intron Scp2 - chr3R 16583019 intron Scp2 - chr3R_6_16580001 chr3R_16580001 RAL-361 3105 chr3R 16620337 16620403 chr3R 16620527 16620593 10 190 28.0 28.0 28.0 0.3 256 chr3R 16620337 intergenic CG14893 +,CG17560 + chr3R 16620465 intergenic CG14893 + chr3R 16620593 intergenic CG14893 + chr3R_10_16620001 chr3R_16620001 RAL-361 3106 chr3R 16651102 16651164 chr3R 16651229 16651291 13 127 30.5 27.0 28.8 0.4 189 chr3R 16651102 exon CG14906 - chr3R 16651196 intergenic CG14907 -,CG14906 - chr3R 16651291 3` UTR CG14907 - chr3R_13_16650001 chr3R_16650001 RAL-361 3107 chr3R 16732112 16732177 chr3R 16732258 16732323 18 146 1.5 0.0 0.8 10.0 211 chr3R 16732112 intron Ubx - chr3R 16732218 intron Ubx - chr3R 16732323 intron Ubx - chr3R_18_16730001 chr3R_16730001 RAL-361 3108 chr3R 16756277 16756348 chr3R 16762518 16762569 diver 17 6236 5.0 7.0 6.0 2.4 6292 chr3R 16756277 intron bxd - chr3R 16759423 intron bxd - chr3R 16762569 intron bxd - chr3R_17_16755001 chr3R_16755001 RAL-361 3109 chr3R 16779936 16780008 chr3R 16780135 16780180 9 191 16.0 20.5 18.2 0.5 244 chr3R 16779936 intergenic not near genes chr3R 16780058 intergenic not near genes chr3R 16780180 intergenic not near genes chr3R_9_16780001 chr3R_16780001 RAL-361 3110 chr3R 16794255 16794281 chr3R 16794395 16794421 6 140 11.0 8.5 9.8 0.6 166 chr3R 16794255 intergenic not near genes chr3R 16794338 intergenic not near genes chr3R 16794421 intergenic not near genes chr3R_6_16790001 chr3R_16790001 RAL-361 3111 chr3R 16794288 16794318 chr3R 16794428 16794458 17 140 6.5 17.5 12.0 1.3 170 chr3R 16794288 intergenic not near genes chr3R 16794373 intergenic not near genes chr3R 16794458 intergenic not near genes chr3R_17_16790001 chr3R_16790001 RAL-361 3112 chr3R 16804554 16804630 chr3R 16804691 16804705 8 129 29.0 29.0 29.0 0.3 151 chr3R 16804554 intergenic not near genes chr3R 16804630 intergenic not near genes chr3R 16804705 intergenic not near genes chr3R_8_16800001 chr3R_16800001 RAL-361 3113 chr3R 16836921 16836981 chr3R 16837300 16837360 14 378 25.0 22.5 23.8 0.6 439 chr3R 16836921 intron iab-8 - chr3R 16837140 intron iab-8 - chr3R 16837360 intron iab-8 - chr3R_14_16835001 chr3R_16835001 RAL-361 3114 chr3R 16851861 16851929 chr3R 16851992 16852060 8 127 16.5 21.0 18.8 0.4 199 chr3R 16851861 intron,intron iab-8 -,iab-4 + chr3R 16851960 intron,intron iab-8 -,iab-4 + chr3R 16852060 intron,intron iab-8 -,iab-4 + chr3R_8_16850001 chr3R_16850001 RAL-361 3115 chr3R 16856593 16856616 chr3R 16856738 16856741 4 140 18.0 8.5 13.2 0.3 148 chr3R 16856593 intron iab-8 - chr3R 16856667 intron iab-8 - chr3R 16856741 intron iab-8 - chr3R_4_16855001 chr3R_16855001 RAL-361 3116 chr3R 16860288 16860331 chr3R 16860416 16860459 10 128 27.0 28.5 27.8 0.3 171 chr3R 16860288 intron iab-8 - chr3R 16860374 intron iab-8 - chr3R 16860459 intron iab-8 - chr3R_10_16860001 chr3R_16860001 RAL-361 3117 chr3R 16895265 16895331 chr3R 16895409 16895475 23 144 20.5 19.0 19.8 1.1 210 chr3R 16895265 intron,intron iab-8 -,CR43617 + chr3R 16895370 intron,intron iab-8 -,CR43617 + chr3R 16895475 intron,intron iab-8 -,CR43617 + chr3R_23_16895001 chr3R_16895001 RAL-361 3118 chr3R 16909057 16909108 chr3R 16909183 16909234 7 126 34.5 33.0 33.8 0.2 177 chr3R 16909057 intron iab-8 - chr3R 16909146 intron iab-8 - chr3R 16909234 intron iab-8 - chr3R_7_16905001 chr3R_16905001 RAL-361 3119 chr3R 16913538 16913603 chr3R 16913680 16913720 7 133 29.5 25.0 27.2 0.2 182 chr3R 16913538 intron iab-8 - chr3R 16913629 intron iab-8 - chr3R 16913720 intron iab-8 - chr3R_7_16910001 chr3R_16910001 RAL-361 3120 chr3R 16924568 16924608 chr3R 16925128 16925168 11 560 29.5 26.0 27.8 0.4 600 chr3R 16924568 intergenic not near genes chr3R 16924868 intergenic not near genes chr3R 16925168 intergenic not near genes chr3R_11_16920001 chr3R_16920001 RAL-361 3121 chr3R 16935446 16935507 chr3R 16935615 16935676 14 168 35.5 31.0 33.2 0.4 230 chr3R 16935446 intron Abd-B - chr3R 16935561 intron Abd-B - chr3R 16935676 intron Abd-B - chr3R_14_16935001 chr3R_16935001 RAL-361 3122 chr3R 16986532 16986597 chr3R 16986671 16986727 11 131 19.0 10.0 14.5 0.7 195 chr3R 16986532 intron CG18622 - chr3R 16986630 intron CG18622 - chr3R 16986727 intron CG18622 - chr3R_11_16985001 chr3R_16985001 RAL-361 3123 chr3R 17099522 17099543 chr3R 17099643 17099664 5 121 17.5 11.0 14.2 0.3 142 chr3R 17099522 intron cher - chr3R 17099593 intron cher - chr3R 17099664 intron cher - chr3R_5_17095001 chr3R_17095001 RAL-361 3124 chr3R 17120461 17120517 chr3R 17120736 17120792 18 272 18.0 17.0 17.5 1.0 331 chr3R 17120461 intron cher - chr3R 17120626 intron,exon cher -,CG34278 + chr3R 17120792 intron,3` UTR cher -,CG34278 + chr3R_18_17120001 chr3R_17120001 RAL-361 3125 chr3R 17121491 17121554 chr3R 17121736 17121799 28 245 15.5 18.0 16.8 1.6 308 chr3R 17121491 intron cher - chr3R 17121645 intron,exon cher -,CG42779 + chr3R 17121799 intron,3` UTR cher -,CG42779 + chr3R_28_17120001 chr3R_17120001 RAL-361 3126 chr3R 17129126 17129175 chr3R 17129258 17129307 6 132 38.0 31.0 34.5 0.2 181 chr3R 17129126 intergenic CG31265 +,CG17475 - chr3R 17129216 intergenic CG31265 +,CG17475 - chr3R 17129307 intergenic CG17475 -,CG31265 + chr3R_6_17125001 chr3R_17125001 RAL-361 3127 chr3R 17166163 17166192 chr3R 17166313 17166342 10 150 11.5 13.5 12.5 0.7 179 chr3R 17166163 intron Mur89F - chr3R 17166252 intron Mur89F - chr3R 17166342 intron Mur89F - chr3R_10_17165001 chr3R_17165001 RAL-361 3128 chr3R 17176236 17176254 chr3R 17176372 17176390 6 136 23.5 17.5 20.5 0.3 154 chr3R 17176236 intron Mur89F - chr3R 17176313 intron Mur89F - chr3R 17176390 intron Mur89F - chr3R_6_17175001 chr3R_17175001 RAL-361 3129 chr3R 17183203 17183256 chr3R 17183608 17183661 14 403 31.0 30.0 30.5 0.4 458 chr3R 17183203 intron Mur89F - chr3R 17183432 intron Mur89F - chr3R 17183661 intron Mur89F - chr3R_14_17180001 chr3R_17180001 RAL-361 3130 chr3R 17184686 17184750 chr3R 17184812 17184876 10 125 21.5 20.5 21.0 0.5 190 chr3R 17184686 intron Mur89F - chr3R 17184781 intron Mur89F - chr3R 17184876 intron Mur89F - chr3R_10_17180001 chr3R_17180001 RAL-361 3131 chr3R 17216686 17216737 chr3R 17216820 17216871 9 130 32.5 23.5 28.0 0.3 185 chr3R 17216686 intergenic CG31262 - chr3R 17216778 intergenic CG31262 - chr3R 17216871 intergenic CG31262 - chr3R_9_17215001 chr3R_17215001 RAL-361 3132 chr3R 17257545 17257601 chr3R 17257675 17257731 22 130 17.0 14.0 15.5 1.3 186 chr3R 17257545 intron beat-IIb - chr3R 17257638 intron beat-IIb - chr3R 17257731 intron beat-IIb - chr3R_22_17255001 chr3R_17255001 RAL-361 3133 chr3R 17283167 17283190 chr3R 17283322 17283330 5 151 13.5 23.5 18.5 0.3 163 chr3R 17283167 intergenic not near genes chr3R 17283248 intergenic not near genes chr3R 17283330 intergenic CG31418 + chr3R_5_17280001 chr3R_17280001 RAL-361 3134 chr3R 17294635 17294699 chr3R 17295097 17295182 BS 13 476 8.0 1.5 4.8 2.2 547 chr3R 17294635 intergenic not near genes chr3R 17294908 intergenic not near genes chr3R 17295182 intergenic not near genes chr3R_13_17290001 chr3R_17290001 RAL-361 3135 chr3R 17301389 17301451 chr3R 17301542 17301604 9 153 36.0 37.5 36.8 0.2 215 chr3R 17301389 intergenic not near genes chr3R 17301496 intergenic not near genes chr3R 17301604 intergenic not near genes chr3R_9_17300001 chr3R_17300001 RAL-361 3136 chr3R 17346641 17346707 chr3R 17348254 17348320 F-element 28 1613 11.5 10.5 11.0 2.3 1679 chr3R 17346641 intron beat-IIa - chr3R 17347480 intron beat-IIa - chr3R 17348320 intron beat-IIa - chr3R_28_17345001 chr3R_17345001 RAL-361 3137 chr3R 17354779 17354784 chr3R 17354961 17354966 5 182 16.0 4.5 10.2 0.4 187 chr3R 17354779 intron beat-IIa - chr3R 17354872 intron beat-IIa - chr3R 17354966 intron beat-IIa - chr3R_5_17350001 chr3R_17350001 RAL-361 3138 chr3R 17355451 17355522 chr3R 17355568 17355629 13 125 29.0 28.5 28.8 0.4 178 chr3R 17355451 intron beat-IIa - chr3R 17355540 intron beat-IIa - chr3R 17355629 intron beat-IIa - chr3R_13_17355001 chr3R_17355001 RAL-361 3139 chr3R 17369327 17369397 chr3R 17369455 17369525 8 122 4.5 1.0 2.8 2.1 198 chr3R 17369327 intergenic not near genes chr3R 17369426 intergenic not near genes chr3R 17369525 intergenic not near genes chr3R_8_17365001 chr3R_17365001 RAL-361 3140 chr3R 17377770 17377810 chr3R 17377934 17377985 8 178 33.0 26.5 29.8 0.3 215 chr3R 17377770 intron Brf - chr3R 17377878 intron Brf - chr3R 17377985 intron Brf - chr3R_8_17375001 chr3R_17375001 RAL-361 3141 chr3R 17400896 17400937 chr3R 17401022 17401063 6 126 27.5 25.0 26.2 0.2 167 chr3R 17400896 intron Sur-8 - chr3R 17400980 intron Sur-8 - chr3R 17401063 intron Sur-8 - chr3R_6_17400001 chr3R_17400001 RAL-361 3142 chr3R 17419981 17420052 chr3R 17420114 17420145 5 125 24.0 22.0 23.0 0.2 164 chr3R 17419981 intergenic not near genes chr3R 17420063 intergenic not near genes chr3R 17420145 intergenic CG42835 + chr3R_5_17420001 chr3R_17420001 RAL-361 3143 chr3R 17426938 17426989 chr3R 17427076 17427127 19 137 24.0 19.0 21.5 0.8 189 chr3R 17426938 intron CG5873 + chr3R 17427032 intron CG5873 + chr3R 17427127 intron CG5873 + chr3R_19_17425001 chr3R_17425001 RAL-361 3144 chr3R 17461156 17461226 chr3R 17461288 17461358 20 132 15.5 19.0 17.2 1.1 202 chr3R 17461156 intergenic not near genes chr3R 17461257 intergenic not near genes chr3R 17461358 intergenic not near genes chr3R_20_17460001 chr3R_17460001 RAL-361 3145 chr3R 17469483 17469514 chr3R 17469633 17469652 6 148 6.5 3.5 5.0 1.0 169 chr3R 17469483 intergenic not near genes chr3R 17469568 intergenic not near genes chr3R 17469652 intergenic not near genes chr3R_6_17465001 chr3R_17465001 RAL-361 3146 chr3R 17492549 17492608 chr3R 17492684 17492743 7 135 23.5 24.0 23.8 0.3 194 chr3R 17492549 exon Dscam3 - chr3R 17492646 intron Dscam3 - chr3R 17492743 intron Dscam3 - chr3R_7_17490001 chr3R_17490001 RAL-361 3147 chr3R 17497930 17497982 chr3R 17498066 17498118 6 134 25.0 26.0 25.5 0.2 188 chr3R 17497930 intron Dscam3 - chr3R 17498024 intron Dscam3 - chr3R 17498118 intron Dscam3 - chr3R_6_17495001 chr3R_17495001 RAL-361 3148 chr3R 17506313 17506393 chr3R 17506441 17506521 23 128 3.5 5.0 4.2 4.4 208 chr3R 17506313 intergenic not near genes chr3R 17506417 intergenic not near genes chr3R 17506521 intergenic not near genes chr3R_23_17505001 chr3R_17505001 RAL-361 3149 chr3R 17509221 17509242 chr3R 17516813 17516840 412 8 7596 7.0 11.0 9.0 0.8 7619 chr3R 17509221 intergenic not near genes chr3R 17513030 intergenic not near genes chr3R 17516840 intergenic not near genes chr3R_8_17510001 chr3R_17510001 RAL-361 3150 chr3R 17519693 17519934 chr3R 17519838 17520060 31 138 23.5 8.5 16.0 1.8 367 chr3R 17519693 intergenic not near genes chr3R 17519876 intergenic not near genes chr3R 17520060 intergenic not near genes chr3R_31_17515001 chr3R_17515001 RAL-361 3151 chr3R 17521510 17521588 chr3R 17521717 17521733 5 186 6.0 12.5 9.2 0.5 223 chr3R 17521510 intergenic not near genes chr3R 17521622 intergenic not near genes chr3R 17521733 intergenic not near genes chr3R_5_17520001 chr3R_17520001 RAL-361 3152 chr3R 17522176 17522291 chr3R 17522319 17522441 12 146 3.0 2.0 2.5 3.4 265 chr3R 17522176 intergenic not near genes chr3R 17522308 intergenic not near genes chr3R 17522441 intergenic not near genes chr3R_12_17520001 chr3R_17520001 RAL-361 3153 chr3R 17522799 17522839 chr3R 17525465 17525505 8 2666 17.5 19.5 18.5 0.4 2706 chr3R 17522799 intergenic not near genes chr3R 17524152 intergenic not near genes chr3R 17525505 intergenic not near genes chr3R_8_17520001 chr3R_17520001 RAL-361 3154 chr3R 17534923 17534988 chr3R 17535261 17535326 4 338 9.5 20.0 14.8 0.3 403 chr3R 17534923 intron P5cr-2 + chr3R 17535124 intron P5cr-2 + chr3R 17535326 intron P5cr-2 + chr3R_4_17535001 chr3R_17535001 RAL-361 3155 chr3R 17591249 17591253 chr3R 17591735 17591739 F-element 4 486 20.0 12.5 16.2 0.2 490 chr3R 17591249 intergenic not near genes chr3R 17591494 intergenic not near genes chr3R 17591739 intergenic not near genes chr3R_4_17590001 chr3R_17590001 RAL-361 3156 chr3R 17591257 17591313 chr3R 17591734 17591799 F-element 20 484 7.0 11.5 9.2 2.0 542 chr3R 17591257 intergenic not near genes chr3R 17591528 intergenic not near genes chr3R 17591799 intergenic not near genes chr3R_20_17590001 chr3R_17590001 RAL-361 3157 chr3R 17608694 17608738 chr3R 17608827 17608871 8 133 31.5 31.5 31.5 0.2 177 chr3R 17608694 intergenic sll + chr3R 17608782 intergenic sll + chr3R 17608871 intergenic sll +,CG14329 + chr3R_8_17605001 chr3R_17605001 RAL-361 3158 chr3R 17624922 17624969 chr3R 17625048 17625095 14 126 17.5 20.0 18.8 0.7 173 chr3R 17624922 intergenic AttD + chr3R 17625008 intergenic AttD + chr3R 17625095 intergenic AttD + chr3R_14_17625001 chr3R_17625001 RAL-361 3159 chr3R 17638273 17638340 chr3R 17638805 17638876 roo 26 536 0.0 10.0 5.0 4.3 603 chr3R 17638273 intron CG43175 + chr3R 17638574 intron CG43175 + chr3R 17638876 intron,intron CG43175 +,CR45222 + chr3R_26_17635001 chr3R_17635001 RAL-361 3160 chr3R 17653031 17653113 chr3R 17653171 17653254 21 141 19.5 21.0 20.2 1.0 223 chr3R 17653031 intron,intron CG14322 +,CR45223 - chr3R 17653142 intron,intron CG14322 +,CR45223 - chr3R 17653254 intron,intron CG14322 +,CR45223 - chr3R_21_17650001 chr3R_17650001 RAL-361 3161 chr3R 17655424 17655447 chr3R 17655569 17655592 7 142 29.0 20.5 24.8 0.3 168 chr3R 17655424 intron CG14322 + chr3R 17655508 intron CG14322 + chr3R 17655592 intron CG14322 + chr3R_7_17655001 chr3R_17655001 RAL-361 3162 chr3R 17680984 17681020 chr3R 17681577 17681613 9 591 38.5 33.5 36.0 0.2 629 chr3R 17680984 intron alt - chr3R 17681298 intron alt - chr3R 17681613 intron alt - chr3R_9_17680001 chr3R_17680001 RAL-361 3163 chr3R 17702514 17702581 chr3R 17702678 17702746 17 163 25.0 25.0 25.0 0.7 232 chr3R 17702514 intron osa - chr3R 17702630 intron osa - chr3R 17702746 intron osa - chr3R_17_17700001 chr3R_17700001 RAL-361 3164 chr3R 17725037 17725083 chr3R 17725181 17725213 5 141 32.5 30.0 31.2 0.2 176 chr3R 17725037 5` UTR Atg8b - chr3R 17725125 intergenic Atg8b - chr3R 17725213 intergenic Atg8b - chr3R_5_17725001 chr3R_17725001 RAL-361 3165 chr3R 17734082 17734099 chr3R 17734221 17734238 7 139 22.5 19.5 21.0 0.3 156 chr3R 17734082 exon CG14321 + chr3R 17734160 3` UTR CG14321 + chr3R 17734238 3` UTR CG14321 + chr3R_7_17730001 chr3R_17730001 RAL-361 3166 chr3R 17734108 17734128 chr3R 17734216 17734245 9 129 22.0 18.0 20.0 0.4 137 chr3R 17734108 3` UTR CG14321 + chr3R 17734176 3` UTR CG14321 + chr3R 17734245 3` UTR CG14321 + chr3R_9_17730001 chr3R_17730001 RAL-361 3167 chr3R 17734795 17734856 chr3R 17734958 17735019 30 163 7.5 0.0 3.8 6.2 224 chr3R 17734795 intergenic CG14321 + chr3R 17734907 intergenic not near genes chr3R 17735019 intergenic not near genes chr3R_30_17730001 chr3R_17730001 RAL-361 3168 chr3R 17773345 17773389 chr3R 17773475 17773519 16 132 8.0 9.5 8.8 1.6 174 chr3R 17773345 exon CG43102 - chr3R 17773432 intron CG43102 - chr3R 17773519 exon CG43102 - chr3R_16_17770001 chr3R_17770001 RAL-361 3169 chr3R 17818841 17818902 chr3R 17818970 17819031 19 128 35.0 34.0 34.5 0.5 190 chr3R 17818841 intron tinc + chr3R 17818936 intron tinc + chr3R 17819031 intron tinc + chr3R_19_17815001 chr3R_17815001 RAL-361 3170 chr3R 17823157 17823235 chr3R 17823284 17823370 19 131 10.5 8.0 9.2 1.9 213 chr3R 17823157 intron tinc + chr3R 17823264 intron tinc + chr3R 17823370 intron tinc + chr3R_19_17820001 chr3R_17820001 RAL-361 3171 chr3R 17825867 17825930 chr3R 17825996 17826062 7 130 12.0 22.0 17.0 0.4 195 chr3R 17825867 intron tinc + chr3R 17825964 intron tinc + chr3R 17826062 intron tinc + chr3R_7_17825001 chr3R_17825001 RAL-361 3172 chr3R 17856027 17856043 chr3R 17856147 17856193 5 142 25.5 25.5 25.5 0.2 166 chr3R 17856027 intron tinc + chr3R 17856110 intron tinc + chr3R 17856193 intron tinc + chr3R_5_17855001 chr3R_17855001 RAL-361 3173 chr3R 17913089 17913107 chr3R 17913214 17913252 6 142 13.0 21.5 17.2 0.3 163 chr3R 17913089 intron Rim - chr3R 17913170 intron Rim - chr3R 17913252 intron Rim - chr3R_6_17910001 chr3R_17910001 RAL-361 3174 chr3R 17925817 17925876 chr3R 17927334 17927357 hobo 6 1504 8.5 11.0 9.8 0.6 1540 chr3R 17925817 intron cpo + chr3R 17926587 intron cpo + chr3R 17927357 intron cpo + chr3R_6_17925001 chr3R_17925001 RAL-361 3175 chr3R 17955820 17955886 chr3R 17955969 17956035 10 149 0.0 10.5 5.2 1.6 215 chr3R 17955820 intron cpo + chr3R 17955928 intron cpo + chr3R 17956035 intron cpo + chr3R_10_17955001 chr3R_17955001 RAL-361 3176 chr3R 17968065 17968106 chr3R 17968193 17968234 6 128 20.0 14.0 17.0 0.3 169 chr3R 17968065 intron cpo + chr3R 17968150 intron cpo + chr3R 17968234 intron cpo + chr3R_6_17965001 chr3R_17965001 RAL-361 3177 chr3R 17986546 17986610 chr3R 17986714 17986781 6 168 30.0 28.5 29.2 0.2 235 chr3R 17986546 intron cpo + chr3R 17986664 intron cpo + chr3R 17986781 intron cpo + chr3R_6_17985001 chr3R_17985001 RAL-361 3178 chr3R 17990815 17991097 chr3R 17990950 17991240 11 137 13.0 23.0 18.0 0.6 425 chr3R 17990815 intron cpo + chr3R 17991028 intron cpo + chr3R 17991240 intron cpo + chr3R_11_17990001 chr3R_17990001 RAL-361 3179 chr3R 18002997 18003016 chr3R 18003143 18003149 4 143 14.5 8.0 11.2 0.3 152 chr3R 18002997 intron cpo + chr3R 18003073 intron cpo + chr3R 18003149 intron cpo + chr3R_4_18000001 chr3R_18000001 RAL-361 3180 chr3R 18018901 18018919 chr3R 18019041 18019059 6 138 26.5 25.5 26.0 0.2 158 chr3R 18018901 intergenic cpo +,DNaseII + chr3R 18018980 intergenic cpo +,DNaseII + chr3R 18019059 intergenic cpo +,DNaseII + chr3R_6_18015001 chr3R_18015001 RAL-361 3181 chr3R 18032730 18032807 chr3R 18040455 18040532 opus 14 7724 6.0 8.5 7.2 1.7 7802 chr3R 18032730 intergenic not near genes chr3R 18036631 intergenic not near genes chr3R 18040532 intergenic not near genes chr3R_14_18035001 chr3R_18035001 RAL-361 3182 chr3R 18061544 18061593 chr3R 18063162 18063211 F-element 25 1618 12.0 10.0 11.0 2.1 1667 chr3R 18061544 intergenic not near genes chr3R 18062378 intergenic not near genes chr3R 18063211 intergenic not near genes chr3R_25_18060001 chr3R_18060001 RAL-361 3183 chr3R 18067099 18067164 chr3R 18067231 18067296 12 130 18.5 16.0 17.2 0.7 197 chr3R 18067099 intergenic not near genes chr3R 18067198 intergenic not near genes chr3R 18067296 intergenic not near genes chr3R_12_18065001 chr3R_18065001 RAL-361 3184 chr3R 18067929 18068015 chr3R 18068075 18068147 13 139 4.0 10.0 7.0 1.6 218 chr3R 18067929 intergenic not near genes chr3R 18068038 intergenic not near genes chr3R 18068147 intergenic not near genes chr3R_13_18065001 chr3R_18065001 RAL-361 3185 chr3R 18078108 18078120 chr3R 18078237 18078249 7 129 21.0 0.0 10.5 0.6 141 chr3R 18078108 intergenic not near genes chr3R 18078178 intergenic not near genes chr3R 18078249 intergenic not near genes chr3R_7_18075001 chr3R_18075001 RAL-361 3186 chr3R 18117367 18117438 chr3R 18117494 18117564 16 125 9.5 13.5 11.5 1.3 197 chr3R 18117367 intron sr + chr3R 18117466 intron sr + chr3R 18117564 intron sr + chr3R_16_18115001 chr3R_18115001 RAL-361 3187 chr3R 18119709 18119747 chr3R 18119836 18119874 11 127 20.0 23.5 21.8 0.5 165 chr3R 18119709 intron sr + chr3R 18119792 intron sr + chr3R 18119874 intron sr + chr3R_11_18115001 chr3R_18115001 RAL-361 3188 chr3R 18122842 18122915 chr3R 18122970 18123042 26 127 6.5 10.5 8.5 2.7 200 chr3R 18122842 intron sr + chr3R 18122942 intron sr + chr3R 18123042 intron sr + chr3R_26_18120001 chr3R_18120001 RAL-361 3189 chr3R 18143471 18143513 chr3R 18143609 18143640 4 135 12.0 18.5 15.2 0.2 169 chr3R 18143471 intergenic not near genes chr3R 18143556 intergenic not near genes chr3R 18143640 intergenic not near genes chr3R_4_18140001 chr3R_18140001 RAL-361 3190 chr3R 18235378 18235421 chr3R 18235510 18235553 8 131 32.0 30.5 31.2 0.2 175 chr3R 18235378 intergenic not near genes chr3R 18235466 intergenic not near genes chr3R 18235553 intergenic not near genes chr3R_8_18235001 chr3R_18235001 RAL-361 3191 chr3R 18262549 18262783 chr3R 18262682 18262915 13 132 6.5 25.5 16.0 0.8 366 chr3R 18262549 intergenic not near genes chr3R 18262732 intergenic not near genes chr3R 18262915 intergenic not near genes chr3R_13_18260001 chr3R_18260001 RAL-361 3192 chr3R 18275518 18275541 chr3R 18275655 18275678 4 137 26.5 20.5 23.5 0.2 160 chr3R 18275518 intron eIF-1A + chr3R 18275598 intron eIF-1A + chr3R 18275678 intron eIF-1A + chr3R_4_18275001 chr3R_18275001 RAL-361 3193 chr3R 18277858 18277910 chr3R 18278012 18278059 13 154 25.5 26.0 25.8 0.5 201 chr3R 18277858 intron eIF-1A + chr3R 18277958 intron eIF-1A + chr3R 18278059 intron eIF-1A + chr3R_13_18275001 chr3R_18275001 RAL-361 3194 chr3R 18293799 18293871 chr3R 18293938 18294010 9 139 19.5 19.5 19.5 0.4 211 chr3R 18293799 intron l(3)05822 - chr3R 18293904 intron l(3)05822 - chr3R 18294010 intron l(3)05822 - chr3R_9_18290001 chr3R_18290001 RAL-361 3195 chr3R 18302940 18302988 chr3R 18303094 18303142 9 154 7.0 0.0 3.5 2.0 202 chr3R 18302940 intergenic CG7126 -,PKD - chr3R 18303041 intergenic CG7126 -,PKD - chr3R 18303142 intergenic PKD -,CG7126 - chr3R_9_18300001 chr3R_18300001 RAL-361 3196 chr3R 18331800 18331814 chr3R 18333355 18333369 hopper2 7 1555 9.5 19.0 14.2 0.5 1569 chr3R 18331800 3` UTR CG15803 - chr3R 18332584 intron CG15803 - chr3R 18333369 3` UTR CG15803 - chr3R_7_18330001 chr3R_18330001 RAL-361 3197 chr3R 18338980 18339020 chr3R 18339134 18339163 5 152 25.5 32.0 28.8 0.2 183 chr3R 18338980 intron CG15803 - chr3R 18339072 intron CG15803 - chr3R 18339163 intron CG15803 - chr3R_5_18335001 chr3R_18335001 RAL-361 3198 chr3R 18394428 18394489 chr3R 18394555 18394616 9 126 32.0 32.0 32.0 0.3 188 chr3R 18394428 intron Vha100-2 - chr3R 18394522 intron Vha100-2 - chr3R 18394616 intron Vha100-2 - chr3R_9_18390001 chr3R_18390001 RAL-361 3199 chr3R 18411463 18411507 chr3R 18411575 18411612 10 117 19.0 18.0 18.5 0.5 149 chr3R 18411463 intron,5` UTR CG31122 -,CG10864 - chr3R 18411538 intron,5` UTR CG31122 -,CG10864 - chr3R 18411612 intron,5` UTR CG31122 -,CG10864 - chr3R_10_18410001 chr3R_18410001 RAL-361 3200 chr3R 18464364 18464403 chr3R 18464492 18464529 6 127 3.5 8.5 6.0 0.9 165 chr3R 18464364 intron fru - chr3R 18464446 intron fru - chr3R 18464529 intron fru - chr3R_6_18460001 chr3R_18460001 RAL-361 3201 chr3R 18466595 18466654 chr3R 18466730 18466745 13 132 23.0 22.0 22.5 0.6 150 chr3R 18466595 intron fru - chr3R 18466670 intron fru - chr3R 18466745 intron fru - chr3R_13_18465001 chr3R_18465001 RAL-361 3202 chr3R 18472236 18472387 chr3R 18472387 18472514 20 147 8.0 5.5 6.8 2.6 278 chr3R 18472236 intron fru - chr3R 18472375 intron fru - chr3R 18472514 intron fru - chr3R_20_18470001 chr3R_18470001 RAL-361 3203 chr3R 18481162 18481204 chr3R 18481301 18481338 6 136 14.5 25.0 19.8 0.3 176 chr3R 18481162 intron fru - chr3R 18481250 intron fru - chr3R 18481338 intron fru - chr3R_6_18480001 chr3R_18480001 RAL-361 3204 chr3R 18496632 18496681 chr3R 18496761 18496821 8 130 0.5 8.0 4.2 1.5 189 chr3R 18496632 intron fru - chr3R 18496726 intron fru - chr3R 18496821 intron fru - chr3R_8_18495001 chr3R_18495001 RAL-361 3205 chr3R 18500699 18500739 chr3R 18500870 18500910 9 171 3.5 12.0 7.8 1.0 211 chr3R 18500699 intron fru - chr3R 18500804 intron fru - chr3R 18500910 intron fru - chr3R_9_18500001 chr3R_18500001 RAL-361 3206 chr3R 18522846 18522884 chr3R 18523006 18523044 10 159 27.0 18.0 22.5 0.4 198 chr3R 18522846 intron fru - chr3R 18522945 intron fru - chr3R 18523044 intron fru - chr3R_10_18520001 chr3R_18520001 RAL-361 3207 chr3R 18537560 18537591 chr3R 18537686 18537716 4 126 14.0 13.0 13.5 0.3 156 chr3R 18537560 intron fru - chr3R 18537638 intron fru - chr3R 18537716 intron fru - chr3R_4_18535001 chr3R_18535001 RAL-361 3208 chr3R 18551833 18551888 chr3R 18551989 18552044 5 156 28.0 23.5 25.8 0.2 211 chr3R 18551833 intergenic not near genes chr3R 18551938 intergenic not near genes chr3R 18552044 intergenic not near genes chr3R_5_18550001 chr3R_18550001 RAL-361 3209 chr3R 18562522 18562690 chr3R 18562691 18562834 19 178 5.5 4.5 5.0 3.2 312 chr3R 18562522 intergenic not near genes chr3R 18562678 intergenic not near genes chr3R 18562834 intergenic not near genes chr3R_19_18560001 chr3R_18560001 RAL-361 3210 chr3R 18567550 18567622 chr3R 18567692 18567764 15 142 12.0 7.0 9.5 1.4 214 chr3R 18567550 intergenic not near genes chr3R 18567657 intergenic not near genes chr3R 18567764 intergenic not near genes chr3R_15_18565001 chr3R_18565001 RAL-361 3211 chr3R 18606466 18606530 chr3R 18610737 18610801 F-element 27 4277 9.0 8.5 8.8 2.8 4335 chr3R 18606466 intron,intron qin +,CG14304 - chr3R 18608634 intron,intron qin +,CG14304 - chr3R 18610801 intron,intron qin +,CG14304 - chr3R_27_18605001 chr3R_18605001 RAL-361 3212 chr3R 18617771 18617797 chr3R 18617900 18617926 5 129 24.5 29.0 26.8 0.2 155 chr3R 18617771 intron,intron qin +,CG14304 - chr3R 18617848 intron,intron qin +,CG14304 - chr3R 18617926 intron,intron qin +,CG14304 - chr3R_5_18615001 chr3R_18615001 RAL-361 3213 chr3R 18618219 18618248 chr3R 18618354 18618383 14 135 22.5 7.0 14.8 0.9 164 chr3R 18618219 intron,intron qin +,CG14304 - chr3R 18618301 intron,intron qin +,CG14304 - chr3R 18618383 intron,intron qin +,CG14304 - chr3R_14_18615001 chr3R_18615001 RAL-361 3214 chr3R 18618260 18618293 chr3R 18618395 18618428 13 134 9.0 16.0 12.5 1.0 168 chr3R 18618260 intron,intron qin +,CG14304 - chr3R 18618344 intron,intron qin +,CG14304 - chr3R 18618428 intron,intron qin +,CG14304 - chr3R_13_18615001 chr3R_18615001 RAL-361 3215 chr3R 18628824 18629035 chr3R 18628998 18629175 24 157 6.5 11.0 8.8 2.4 351 chr3R 18628824 intron qin + chr3R 18629000 intron qin + chr3R 18629175 intron,3` UTR qin +,CG14301 - chr3R_24_18625001 chr3R_18625001 RAL-361 3216 chr3R 18703233 18703309 chr3R 18703391 18703468 14 159 30.0 28.5 29.2 0.5 235 chr3R 18703233 intergenic not near genes chr3R 18703350 intergenic not near genes chr3R 18703468 intergenic not near genes chr3R_14_18700001 chr3R_18700001 RAL-361 3217 chr3R 18706881 18706953 chr3R 18707089 18707161 6 208 20.5 25.5 23.0 0.2 280 chr3R 18706881 intron,intron Cha +,VAChT + chr3R 18707021 intron,intron Cha +,VAChT + chr3R 18707161 intron,intron Cha +,VAChT + chr3R_6_18705001 chr3R_18705001 RAL-361 3218 chr3R 18722933 18722958 chr3R 18723067 18723093 5 135 25.0 28.0 26.5 0.2 160 chr3R 18722933 intron Cha + chr3R 18723013 intron Cha + chr3R 18723093 intron Cha + chr3R_5_18720001 chr3R_18720001 RAL-361 3219 chr3R 18729975 18730033 chr3R 18730101 18730158 14 122 7.0 7.0 7.0 1.8 183 chr3R 18729975 exon Cha + chr3R 18730066 intron Cha + chr3R 18730158 exon Cha + chr3R_14_18730001 chr3R_18730001 RAL-361 3220 chr3R 18766735 18766803 chr3R 18766863 18766931 20 126 24.0 20.0 22.0 0.9 196 chr3R 18766735 intron CG7720 - chr3R 18766833 intron CG7720 - chr3R 18766931 intron CG7720 - chr3R_20_18765001 chr3R_18765001 RAL-361 3221 chr3R 18770250 18770321 chr3R 18770382 18770452 15 132 8.0 14.5 11.2 1.2 202 chr3R 18770250 intron CG7720 - chr3R 18770351 intron CG7720 - chr3R 18770452 intron CG7720 - chr3R_15_18770001 chr3R_18770001 RAL-361 3222 chr3R 18781652 18781664 chr3R 18781778 18781790 9 126 21.5 2.5 12.0 0.7 138 chr3R 18781652 intron CG7720 - chr3R 18781721 intron CG7720 - chr3R 18781790 intron CG7720 - chr3R_9_18780001 chr3R_18780001 RAL-361 3223 chr3R 18781668 18781720 chr3R 18781769 18781846 28 122 8.5 5.0 6.8 3.6 178 chr3R 18781668 intron CG7720 - chr3R 18781757 intron CG7720 - chr3R 18781846 intron CG7720 - chr3R_28_18780001 chr3R_18780001 RAL-361 3224 chr3R 18782712 18782771 chr3R 18782856 18782915 16 143 15.0 24.0 19.5 0.8 203 chr3R 18782712 intron CG7720 - chr3R 18782814 intron CG7720 - chr3R 18782915 intron CG7720 - chr3R_16_18780001 chr3R_18780001 RAL-361 3225 chr3R 18791476 18791518 chr3R 18791583 18791597 7 105 12.5 9.0 10.8 0.6 121 chr3R 18791476 intron CG7720 - chr3R 18791536 intron CG7720 - chr3R 18791597 intron CG7720 - chr3R_7_18790001 chr3R_18790001 RAL-361 3226 chr3R 18792767 18792829 chr3R 18792900 18792962 10 133 14.0 8.0 11.0 0.8 195 chr3R 18792767 intron CG7720 - chr3R 18792864 intron CG7720 - chr3R 18792962 intron CG7720 - chr3R_10_18790001 chr3R_18790001 RAL-361 3227 chr3R 18807298 18807456 chr3R 18807425 18807588 7 130 1.0 0.0 0.5 4.7 290 chr3R 18807298 intron CG18208 - chr3R 18807443 intron CG18208 - chr3R 18807588 intron CG18208 - chr3R_7_18805001 chr3R_18805001 RAL-361 3228 chr3R 18808427 18808458 chr3R 18808553 18808573 7 123 26.0 16.5 21.2 0.3 146 chr3R 18808427 intron CG18208 - chr3R 18808500 intron CG18208 - chr3R 18808573 intron CG18208 - chr3R_7_18805001 chr3R_18805001 RAL-361 3229 chr3R 18808459 18808504 chr3R 18808550 18808591 9 106 18.0 17.0 17.5 0.5 132 chr3R 18808459 intron CG18208 - chr3R 18808525 intron CG18208 - chr3R 18808591 intron CG18208 - chr3R_9_18805001 chr3R_18805001 RAL-361 3230 chr3R 18812025 18812100 chr3R 18812153 18812227 28 126 10.0 12.5 11.2 2.3 202 chr3R 18812025 intron CG18208 - chr3R 18812126 intron CG18208 - chr3R 18812227 intron CG18208 - chr3R_28_18810001 chr3R_18810001 RAL-361 3231 chr3R 18836794 18836861 chr3R 18836954 18836981 20 156 20.5 18.0 19.2 1.0 187 chr3R 18836794 intron CG18208 - chr3R 18836888 intron CG18208 - chr3R 18836981 intron CG18208 - chr3R_20_18835001 chr3R_18835001 RAL-361 3232 chr3R 18841854 18841913 chr3R 18842266 18842330 10 415 36.0 18.0 27.0 0.4 476 chr3R 18841854 intron CG18208 - chr3R 18842092 intron CG18208 - chr3R 18842330 intron CG18208 - chr3R_10_18840001 chr3R_18840001 RAL-361 3233 chr3R 18842871 18842916 chr3R 18843009 18843054 4 138 25.5 36.0 30.8 0.1 183 chr3R 18842871 intron CG18208 - chr3R 18842962 intron CG18208 - chr3R 18843054 intron CG18208 - chr3R_4_18840001 chr3R_18840001 RAL-361 3234 chr3R 18848772 18848831 chr3R 18848895 18848961 18 125 13.5 12.0 12.8 1.3 189 chr3R 18848772 5` UTR CG18208 - chr3R 18848866 5` UTR CG18208 - chr3R 18848961 5` UTR CG18208 - chr3R_18_18845001 chr3R_18845001 RAL-361 3235 chr3R 18863109 18863188 chr3R 18863246 18863324 12 136 2.5 11.0 6.8 1.5 215 chr3R 18863109 intergenic not near genes chr3R 18863216 intergenic not near genes chr3R 18863324 intergenic not near genes chr3R_12_18860001 chr3R_18860001 RAL-361 3236 chr3R 18870778 18870848 chr3R 18870915 18870985 12 137 27.5 29.5 28.5 0.4 207 chr3R 18870778 intergenic not near genes chr3R 18870882 intergenic not near genes chr3R 18870985 intergenic not near genes chr3R_12_18870001 chr3R_18870001 RAL-361 3237 chr3R 18886045 18886055 chr3R 18886174 18886184 5 129 2.0 6.5 4.2 1.0 139 chr3R 18886045 intergenic not near genes chr3R 18886114 intergenic not near genes chr3R 18886184 intergenic not near genes chr3R_5_18885001 chr3R_18885001 RAL-361 3238 chr3R 18910750 18910819 chr3R 18910878 18910953 26 133 5.5 10.0 7.8 3.0 203 chr3R 18910750 3` UTR EndoA + chr3R 18910852 intergenic EndoA +,CG14291 - chr3R 18910953 intergenic CG14291 -,EndoA + chr3R_26_18910001 chr3R_18910001 RAL-361 3239 chr3R 18934397 18934437 chr3R 18934524 18934566 roo 11 122 13.0 15.0 14.0 0.7 169 chr3R 18934397 intron CG42613 + chr3R 18934482 intron CG42613 + chr3R 18934566 intron CG42613 + chr3R_11_18930001 chr3R_18930001 RAL-361 3240 chr3R 18961941 18961997 chr3R 18962070 18962125 18 124 7.0 9.5 8.2 2.0 184 chr3R 18961941 intron,intron CG42613 +,CG43732 + chr3R 18962033 intron,intron CG42613 +,CG43732 + chr3R 18962125 intron,intron CG42613 +,CG43732 + chr3R_18_18960001 chr3R_18960001 RAL-361 3241 chr3R 19018474 19018525 chr3R 19018587 19018647 9 122 16.5 19.0 17.8 0.5 173 chr3R 19018474 exon gukh + chr3R 19018560 intron gukh + chr3R 19018647 intron gukh + chr3R_9_19015001 chr3R_19015001 RAL-361 3242 chr3R 19091168 19091196 chr3R 19091290 19091323 8 127 20.0 21.0 20.5 0.4 155 chr3R 19091168 intron cdi - chr3R 19091246 intron cdi - chr3R 19091323 intron cdi - chr3R_8_19090001 chr3R_19090001 RAL-361 3243 chr3R 19106780 19106843 chr3R 19106918 19106983 1360 7 139 23.0 18.0 20.5 0.3 203 chr3R 19106780 intron CG6040 + chr3R 19106882 intron CG6040 + chr3R 19106983 intron CG6040 + chr3R_7_19105001 chr3R_19105001 RAL-361 3244 chr3R 19128830 19128841 chr3R 19129014 19129025 5 184 0.0 6.0 3.0 1.2 195 chr3R 19128830 intron CG6040 + chr3R 19128928 intron CG6040 + chr3R 19129025 intron CG6040 + chr3R_5_19125001 chr3R_19125001 RAL-361 3245 chr3R 19136406 19136473 chr3R 19139742 19139809 Bari1 43 3339 111.5 64.0 87.8 0.5 3403 chr3R 19136406 exon Cyp12a4 + chr3R 19138108 intergenic not near genes chr3R 19139809 3` UTR Ppcs - chr3R_43_19135001 chr3R_19135001 RAL-361 3246 chr3R 19140225 19140300 chr3R 19140723 19140734 17 490 17.5 17.5 17.5 0.9 509 chr3R 19140225 3` UTR Ppcs - chr3R 19140480 3` UTR Ppcs - chr3R 19140734 3` UTR Ppcs - chr3R_17_19140001 chr3R_19140001 RAL-361 3247 chr3R 19144366 19144431 chr3R 19144512 19144577 14 145 34.0 35.5 34.8 0.4 211 chr3R 19144366 intron Ppcs - chr3R 19144472 intron Ppcs - chr3R 19144577 intron Ppcs - chr3R_14_19140001 chr3R_19140001 RAL-361 3248 chr3R 19187630 19187692 chr3R 19187757 19187819 13 127 28.0 26.5 27.2 0.5 189 chr3R 19187630 intron CG31475 + chr3R 19187724 intron CG31475 + chr3R 19187819 intron CG31475 + chr3R_13_19185001 chr3R_19185001 RAL-361 3249 chr3R 19193002 19193002 chr3R 19197290 19197355 F-element 6 4318 2.0 4.0 3.0 1.5 4353 chr3R 19193002 intron CG31475 + chr3R 19195178 intron CG31475 + chr3R 19197355 intron CG31475 + chr3R_6_19195001 chr3R_19195001 RAL-361 3250 chr3R 19193003 19193006 chr3R 19197288 19197360 F-element 5 4319 2.0 3.5 2.8 1.3 4357 chr3R 19193003 intron CG31475 + chr3R 19195182 intron CG31475 + chr3R 19197360 intron CG31475 + chr3R_5_19195001 chr3R_19195001 RAL-361 3251 chr3R 19205559 19205625 chr3R 19205690 19205736 18 128 13.0 22.0 17.5 1.0 177 chr3R 19205559 intergenic not near genes chr3R 19205648 intergenic not near genes chr3R 19205736 intergenic not near genes chr3R_18_19205001 chr3R_19205001 RAL-361 3252 chr3R 19208617 19208663 chr3R 19208752 19208800 12 139 8.0 0.0 4.0 2.4 183 chr3R 19208617 intergenic not near genes chr3R 19208708 intergenic not near genes chr3R 19208800 intergenic not near genes chr3R_12_19205001 chr3R_19205001 RAL-361 3253 chr3R 19221959 19222014 chr3R 19222088 19222143 13 129 20.0 19.0 19.5 0.6 184 chr3R 19221959 intron vib - chr3R 19222051 intron vib - chr3R 19222143 intron vib - chr3R_13_19220001 chr3R_19220001 RAL-361 3254 chr3R 19223427 19223500 chr3R 19223570 19223643 7 135 16.5 18.0 17.2 0.4 216 chr3R 19223427 intron vib - chr3R 19223535 intron vib - chr3R 19223643 intron vib - chr3R_7_19220001 chr3R_19220001 RAL-361 3255 chr3R 19223893 19223905 chr3R 19224023 19224035 5 130 0.0 11.0 5.5 0.8 142 chr3R 19223893 intron vib - chr3R 19223964 intron vib - chr3R 19224035 intron vib - chr3R_5_19220001 chr3R_19220001 RAL-361 3256 chr3R 19265603 19265679 chr3R 19265735 19265820 10 136 17.0 20.0 18.5 0.5 217 chr3R 19265603 intergenic not near genes chr3R 19265712 intergenic not near genes chr3R 19265820 intergenic not near genes chr3R_10_19265001 chr3R_19265001 RAL-361 3257 chr3R 19271371 19271442 chr3R 19271506 19271577 29 130 6.0 5.5 5.8 4.3 206 chr3R 19271371 intergenic not near genes chr3R 19271474 intergenic not near genes chr3R 19271577 intergenic not near genes chr3R_29_19270001 chr3R_19270001 RAL-361 3258 chr3R 19276881 19276947 chr3R 19277011 19277077 21 130 6.0 2.0 4.0 4.2 196 chr3R 19276881 intergenic not near genes chr3R 19276979 intergenic not near genes chr3R 19277077 intergenic not near genes chr3R_21_19275001 chr3R_19275001 RAL-361 3259 chr3R 19361354 19361413 chr3R 19361472 19361549 13 135 22.0 24.0 23.0 0.5 195 chr3R 19361354 intergenic not near genes chr3R 19361452 intergenic not near genes chr3R 19361549 intergenic not near genes chr3R_13_19360001 chr3R_19360001 RAL-361 3260 chr3R 19367534 19367606 chr3R 19367673 19367745 8 139 20.5 24.0 22.2 0.3 211 chr3R 19367534 intergenic not near genes chr3R 19367640 intergenic not near genes chr3R 19367745 intergenic not near genes chr3R_8_19365001 chr3R_19365001 RAL-361 3261 chr3R 19408031 19408104 chr3R 19408186 19408258 7 155 22.0 22.0 22.0 0.3 227 chr3R 19408031 intergenic not near genes chr3R 19408144 intergenic not near genes chr3R 19408258 intergenic not near genes chr3R_7_19405001 chr3R_19405001 RAL-361 3262 chr3R 19417497 19417522 chr3R 19417635 19417660 4 138 23.5 20.5 22.0 0.2 163 chr3R 19417497 intron CG31221 + chr3R 19417578 intron CG31221 + chr3R 19417660 intron CG31221 + chr3R_4_19415001 chr3R_19415001 RAL-361 3263 chr3R 19466052 19466103 chr3R 19466198 19466249 14 146 34.5 32.5 33.5 0.4 197 chr3R 19466052 intron Dys + chr3R 19466150 intron Dys + chr3R 19466249 intron Dys + chr3R_14_19465001 chr3R_19465001 RAL-361 3264 chr3R 19490399 19490465 chr3R 19490538 19490604 19 139 15.0 18.5 16.8 1.1 205 chr3R 19490399 intron,exon Dys +,CG15025 - chr3R 19490502 intron,intron Dys +,CG15025 - chr3R 19490604 intron,exon Dys +,CG15025 - chr3R_19_19490001 chr3R_19490001 RAL-361 3265 chr3R 19494363 19494408 chr3R 19494493 19494538 15 130 12.0 13.0 12.5 1.1 175 chr3R 19494363 intron Dys + chr3R 19494450 intron Dys + chr3R 19494538 intron Dys + chr3R_15_19490001 chr3R_19490001 RAL-361 3266 chr3R 19505895 19505963 chr3R 19506044 19506112 27 148 21.5 23.5 22.5 1.1 217 chr3R 19505895 exon Dys + chr3R 19506004 intron Dys + chr3R 19506112 intron Dys + chr3R_27_19505001 chr3R_19505001 RAL-361 3267 chr3R 19509837 19509893 chr3R 19510012 19510068 7 175 27.0 14.0 20.5 0.3 231 chr3R 19509837 intron Dys + chr3R 19509952 intron Dys + chr3R 19510068 intron Dys + chr3R_7_19505001 chr3R_19505001 RAL-361 3268 chr3R 19516102 19516168 chr3R 19516230 19516296 11 128 19.5 21.0 20.2 0.5 194 chr3R 19516102 intron Dys + chr3R 19516199 intron Dys + chr3R 19516296 intron Dys + chr3R_11_19515001 chr3R_19515001 RAL-361 3269 chr3R 19561780 19561836 chr3R 19561907 19561923 9 115 17.5 13.0 15.2 0.6 143 chr3R 19561780 intron Dys + chr3R 19561852 intron Dys + chr3R 19561923 intron Dys + chr3R_9_19560001 chr3R_19560001 RAL-361 3270 chr3R 19563702 19563754 chr3R 19563991 19564043 9 289 24.0 27.5 25.8 0.3 341 chr3R 19563702 intron Dys + chr3R 19563872 intron Dys + chr3R 19564043 intron Dys + chr3R_9_19560001 chr3R_19560001 RAL-361 3271 chr3R 19567536 19567570 chr3R 19567672 19567706 8 136 12.0 13.0 12.5 0.6 170 chr3R 19567536 intron Dys + chr3R 19567621 intron Dys + chr3R 19567706 intron Dys + chr3R_8_19565001 chr3R_19565001 RAL-361 3272 chr3R 19581591 19581667 chr3R 19581721 19581797 10 130 16.5 12.5 14.5 0.6 206 chr3R 19581591 intron Dys + chr3R 19581694 intron Dys + chr3R 19581797 intron Dys + chr3R_10_19580001 chr3R_19580001 RAL-361 3273 chr3R 19588365 19588422 chr3R 19588497 19588555 7 133 27.0 19.5 23.2 0.3 190 chr3R 19588365 intron Dys + chr3R 19588460 intron Dys + chr3R 19588555 intron Dys + chr3R_7_19585001 chr3R_19585001 RAL-361 3274 chr3R 19590612 19590627 chr3R 19590754 19590769 4 142 10.5 10.5 10.5 0.3 157 chr3R 19590612 exon Dys + chr3R 19590690 intron Dys + chr3R 19590769 exon Dys + chr3R_4_19590001 chr3R_19590001 RAL-361 3275 chr3R 19590628 19590644 chr3R 19590739 19590786 5 134 7.5 10.0 8.8 0.5 158 chr3R 19590628 exon Dys + chr3R 19590707 intron Dys + chr3R 19590786 exon Dys + chr3R_5_19590001 chr3R_19590001 RAL-361 3276 chr3R 19591487 19591550 chr3R 19591617 19591681 5 130 7.0 1.0 4.0 1.0 194 chr3R 19591487 intron Dys + chr3R 19591584 intron Dys + chr3R 19591681 exon Dys + chr3R_5_19590001 chr3R_19590001 RAL-361 3277 chr3R 19602681 19602748 chr3R 19602864 19602931 11 183 31.0 31.5 31.2 0.3 250 chr3R 19602681 intergenic CG7333 + chr3R 19602806 intergenic CG7333 + chr3R 19602931 intergenic CG7333 +,CG7342 + chr3R_11_19600001 chr3R_19600001 RAL-361 3278 chr3R 19608970 19608983 chr3R 19612404 19612417 4 3434 47.0 38.5 42.8 0.1 3447 chr3R 19608970 exon CG17751 + chr3R 19610694 exon CG17752 + chr3R 19612417 3` UTR CG17752 + chr3R_4_19610001 chr3R_19610001 RAL-361 3279 chr3R 19612040 19612105 chr3R 19612369 19612434 5 327 32.0 30.5 31.2 0.2 394 chr3R 19612040 exon CG17752 + chr3R 19612237 intron CG17752 + chr3R 19612434 3` UTR CG17752 + chr3R_5_19610001 chr3R_19610001 RAL-361 3280 chr3R 19612005 19612053 chr3R 19615988 19616047 4 3986 36.0 42.0 39.0 0.1 4042 chr3R 19612005 exon CG17752 + chr3R 19614026 exon CG16727 + chr3R 19616047 3` UTR CG6231 - chr3R_4_19610001 chr3R_19610001 RAL-361 3281 chr3R 19633265 19633318 chr3R 19633401 19633454 13 136 19.5 25.5 22.5 0.6 189 chr3R 19633265 intergenic subdued - chr3R 19633360 intergenic subdued - chr3R 19633454 3` UTR subdued - chr3R_13_19630001 chr3R_19630001 RAL-361 3282 chr3R 19648294 19648352 chr3R 19650365 19650410 13 2061 46.0 49.5 47.8 0.3 2116 chr3R 19648294 5` UTR CG6195 - chr3R 19649352 intron CG31220 + chr3R 19650410 exon CG31220 + chr3R_13_19645001 chr3R_19645001 RAL-361 3283 chr3R 19648292 19648344 chr3R 19650411 19650422 7 2074 45.5 39.5 42.5 0.2 2130 chr3R 19648292 5` UTR CG6195 - chr3R 19649357 intron CG31220 + chr3R 19650422 exon CG31220 + chr3R_7_19645001 chr3R_19645001 RAL-361 3284 chr3R 19690059 19690111 chr3R 19690196 19690248 8 134 27.5 18.5 23.0 0.3 189 chr3R 19690059 intron Naam + chr3R 19690154 intron Naam + chr3R 19690248 intron Naam + chr3R_8_19690001 chr3R_19690001 RAL-361 3285 chr3R 19702285 19702348 chr3R 19702417 19702480 10 129 32.5 30.0 31.2 0.3 195 chr3R 19702285 intergenic not near genes chr3R 19702382 intergenic not near genes chr3R 19702480 intergenic not near genes chr3R_10_19700001 chr3R_19700001 RAL-361 3286 chr3R 19718822 19718856 chr3R 19718997 19719031 7 175 15.0 12.0 13.5 0.5 209 chr3R 19718822 intergenic not near genes chr3R 19718926 intergenic not near genes chr3R 19719031 intergenic not near genes chr3R_7_19715001 chr3R_19715001 RAL-361 3287 chr3R 19718858 19718929 chr3R 19718988 19719059 11 142 4.5 9.5 7.0 1.4 201 chr3R 19718858 intergenic not near genes chr3R 19718958 intergenic not near genes chr3R 19719059 intergenic not near genes chr3R_11_19715001 chr3R_19715001 RAL-361 3288 chr3R 19763873 19763948 chr3R 19764011 19764086 6 138 13.0 18.0 15.5 0.4 213 chr3R 19763873 intron GluClalpha + chr3R 19763980 intron GluClalpha + chr3R 19764086 intron GluClalpha + chr3R_6_19760001 chr3R_19760001 RAL-361 3289 chr3R 19777255 19777315 chr3R 19777471 19777531 9 216 27.0 30.5 28.8 0.3 276 chr3R 19777255 5` UTR CG11659 - chr3R 19777393 intergenic CG11659 - chr3R 19777531 intergenic CG11659 - chr3R_9_19775001 chr3R_19775001 RAL-361 3290 chr3R 19782977 19783041 chr3R 19783144 19783168 25 165 21.0 25.0 23.0 1.0 191 chr3R 19782977 exon CG11407 + chr3R 19783072 3` UTR CG11407 + chr3R 19783168 intergenic CG11407 +,CG11453 + chr3R_25_19780001 chr3R_19780001 RAL-361 3291 chr3R 19789017 19789083 chr3R 19789213 19789277 12 194 20.5 15.0 17.8 0.6 260 chr3R 19789017 intergenic not near genes chr3R 19789147 intergenic not near genes chr3R 19789277 intergenic not near genes chr3R_12_19785001 chr3R_19785001 RAL-361 3292 chr3R 19800640 19800714 chr3R 19800767 19800789 12 117 18.5 15.5 17.0 0.7 149 chr3R 19800640 intron bnl - chr3R 19800714 intron bnl - chr3R 19800789 intron bnl - chr3R_12_19800001 chr3R_19800001 RAL-361 3293 chr3R 19827478 19827558 chr3R 19827614 19827694 33 136 6.0 8.0 7.0 4.1 216 chr3R 19827478 intron bnl - chr3R 19827586 intron bnl - chr3R 19827694 exon bnl - chr3R_33_19825001 chr3R_19825001 RAL-361 3294 chr3R 19830841 19830909 chr3R 19830968 19831036 6 115 20.0 21.0 20.5 0.3 195 chr3R 19830841 intron bnl - chr3R 19830938 intron bnl - chr3R 19831036 intron bnl - chr3R_6_19830001 chr3R_19830001 RAL-361 3295 chr3R 19846925 19846960 chr3R 19847121 19847171 10 205 21.5 18.0 19.8 0.5 246 chr3R 19846925 intergenic CG4662 + chr3R 19847048 intergenic CG4662 + chr3R 19847171 intergenic CG4662 + chr3R_10_19845001 chr3R_19845001 RAL-361 3296 chr3R 19859486 19859549 chr3R 19859612 19859675 9 125 18.5 18.0 18.2 0.5 189 chr3R 19859486 intron Ire1 - chr3R 19859580 intron Ire1 - chr3R 19859675 intron Ire1 - chr3R_9_19855001 chr3R_19855001 RAL-361 3297 chr3R 19859934 19859990 chr3R 19860048 19860116 12 125 22.0 21.5 21.8 0.5 182 chr3R 19859934 intron Ire1 - chr3R 19860025 intron Ire1 - chr3R 19860116 intron Ire1 - chr3R_12_19860001 chr3R_19860001 RAL-361 3298 chr3R 19894758 19894825 chr3R 19894884 19894944 7 121 30.0 24.0 27.0 0.2 186 chr3R 19894758 intron CG4733 + chr3R 19894851 intron CG4733 + chr3R 19894944 intron CG4733 + chr3R_7_19890001 chr3R_19890001 RAL-361 3299 chr3R 19908219 19908306 chr3R 19908353 19908383 13 130 0.5 4.0 2.2 4.1 164 chr3R 19908219 intron RhoGAP92B + chr3R 19908301 intron RhoGAP92B + chr3R 19908383 intron RhoGAP92B + chr3R_13_19905001 chr3R_19905001 RAL-361 3300 chr3R 19940864 19940881 chr3R 19940992 19941009 4 128 17.5 23.5 20.5 0.2 145 chr3R 19940864 intron Hs6st - chr3R 19940936 intron Hs6st - chr3R 19941009 intron Hs6st - chr3R_4_19940001 chr3R_19940001 RAL-361 3301 chr3R 19943833 19943858 chr3R 19943963 19943973 4 126 21.0 19.0 20.0 0.2 140 chr3R 19943833 intron Hs6st - chr3R 19943903 intron Hs6st - chr3R 19943973 intron Hs6st - chr3R_4_19940001 chr3R_19940001 RAL-361 3302 chr3R 19955029 19955065 chr3R 19956034 19956070 8 1005 21.5 11.5 16.5 0.5 1041 chr3R 19955029 intron Hs6st - chr3R 19955550 intron Hs6st - chr3R 19956070 intron Hs6st - chr3R_8_19955001 chr3R_19955001 RAL-361 3303 chr3R 19967537 19967580 chr3R 19967670 19967713 7 133 15.5 29.0 22.2 0.3 176 chr3R 19967537 intron Hs6st - chr3R 19967625 intron Hs6st - chr3R 19967713 intron Hs6st - chr3R_7_19965001 chr3R_19965001 RAL-361 3304 chr3R 19981433 19981440 chr3R 19981563 19981570 4 130 22.5 23.5 23.0 0.2 137 chr3R 19981433 intron Hs6st - chr3R 19981502 intron Hs6st - chr3R 19981570 intron Hs6st - chr3R_4_19980001 chr3R_19980001 RAL-361 3305 chr3R 19981441 19981450 chr3R 19981551 19981580 4 125 20.0 22.0 21.0 0.2 139 chr3R 19981441 intron Hs6st - chr3R 19981510 intron Hs6st - chr3R 19981580 intron Hs6st - chr3R_4_19980001 chr3R_19980001 RAL-361 3306 chr3R 20008784 20008838 chr3R 20008915 20008969 11 128 24.0 20.5 22.2 0.5 185 chr3R 20008784 intergenic MED25 +,Hs6st - chr3R 20008876 intergenic MED25 +,Hs6st - chr3R 20008969 5` UTR MED25 + chr3R_11_20005001 chr3R_20005001 RAL-361 3307 chr3R 20020105 20020168 chr3R 20020297 20020360 20 192 23.0 16.5 19.8 1.0 255 chr3R 20020105 intron CG4433 - chr3R 20020232 intron CG4433 - chr3R 20020360 exon CG4433 - chr3R_20_20020001 chr3R_20020001 RAL-361 3308 chr3R 20059423 20059484 chr3R 20059550 20059614 6 129 24.5 24.5 24.5 0.2 191 chr3R 20059423 intron CG4390 - chr3R 20059518 intron CG4390 - chr3R 20059614 exon CG4390 - chr3R_6_20055001 chr3R_20055001 RAL-361 3309 chr3R 20060584 20060654 chr3R 20060717 20060787 19 132 20.0 18.5 19.2 0.9 203 chr3R 20060584 intergenic not near genes chr3R 20060686 intergenic not near genes chr3R 20060787 intergenic not near genes chr3R_19_20060001 chr3R_20060001 RAL-361 3310 chr3R 20066073 20066137 chr3R 20066313 20066376 4 240 27.0 24.0 25.5 0.2 303 chr3R 20066073 intergenic not near genes chr3R 20066224 intergenic not near genes chr3R 20066376 intergenic not near genes chr3R_4_20065001 chr3R_20065001 RAL-361 3311 chr3R 20066504 20066584 chr3R 20066790 20066870 8 286 16.0 24.0 20.0 0.4 366 chr3R 20066504 intergenic not near genes chr3R 20066687 intergenic not near genes chr3R 20066870 intergenic not near genes chr3R_8_20065001 chr3R_20065001 RAL-361 3312 chr3R 20097664 20097733 chr3R 20097792 20097861 7 127 18.5 20.0 19.2 0.3 197 chr3R 20097664 intergenic not near genes chr3R 20097762 intergenic not near genes chr3R 20097861 intergenic not near genes chr3R_7_20095001 chr3R_20095001 RAL-361 3313 chr3R 20109506 20109557 chr3R 20114745 20114813 copia 19 5255 9.0 10.0 9.5 1.8 5307 chr3R 20109506 intergenic not near genes chr3R 20112160 intergenic not near genes chr3R 20114813 intergenic CG10887 + chr3R_19_20110001 chr3R_20110001 RAL-361 3314 chr3R 20124528 20124575 chr3R 20124665 20124712 6 137 26.0 26.5 26.2 0.2 184 chr3R 20124528 intergenic not near genes chr3R 20124620 intergenic not near genes chr3R 20124712 intergenic not near genes chr3R_6_20120001 chr3R_20120001 RAL-361 3315 chr3R 20143597 20143614 chr3R 20143726 20143743 4 129 19.5 21.0 20.2 0.2 146 chr3R 20143597 intergenic not near genes chr3R 20143670 intergenic not near genes chr3R 20143743 intergenic not near genes chr3R_4_20140001 chr3R_20140001 RAL-361 3316 chr3R 20156656 20156710 chr3R 20165877 20165930 roo 20 9220 8.5 11.0 9.8 1.9 9274 chr3R 20156656 intergenic not near genes chr3R 20161293 intergenic not near genes chr3R 20165930 intergenic not near genes chr3R_20_20160001 chr3R_20160001 RAL-361 3317 chr3R 20172649 20172673 chr3R 20172828 20172878 6 192 25.0 24.5 24.8 0.2 229 chr3R 20172649 intron CG5023 + chr3R 20172764 intron CG5023 + chr3R 20172878 intron CG5023 + chr3R_6_20170001 chr3R_20170001 RAL-361 3318 chr3R 20177747 20177821 chr3R 20177878 20177952 19 131 15.0 14.5 14.8 1.2 205 chr3R 20177747 intergenic not near genes chr3R 20177850 intergenic not near genes chr3R 20177952 intergenic not near genes chr3R_19_20175001 chr3R_20175001 RAL-361 3319 chr3R 20196322 20196358 chr3R 20196431 20196496 8 130 28.5 21.0 24.8 0.3 174 chr3R 20196322 intergenic not near genes chr3R 20196409 intergenic not near genes chr3R 20196496 intergenic not near genes chr3R_8_20195001 chr3R_20195001 RAL-361 3320 chr3R 20203922 20203953 chr3R 20204053 20204084 4 131 0.5 10.5 5.5 0.6 162 chr3R 20203922 intergenic not near genes chr3R 20204003 intergenic not near genes chr3R 20204084 intergenic not near genes chr3R_4_20200001 chr3R_20200001 RAL-361 3321 chr3R 20205535 20205593 chr3R 20205691 20205765 26 171 3.5 9.5 6.5 3.5 230 chr3R 20205535 intron Nlg4 + chr3R 20205650 intron Nlg4 + chr3R 20205765 intron Nlg4 + chr3R_26_20205001 chr3R_20205001 RAL-361 3322 chr3R 20205886 20205929 chr3R 20206020 20206063 8 134 2.0 6.0 4.0 1.6 177 chr3R 20205886 intron Nlg4 + chr3R 20205974 intron Nlg4 + chr3R 20206063 intron Nlg4 + chr3R_8_20205001 chr3R_20205001 RAL-361 3323 chr3R 20230290 20230350 chr3R 20230421 20230481 28 131 8.5 8.0 8.2 3.0 191 chr3R 20230290 intron Nlg4 + chr3R 20230386 intron Nlg4 + chr3R 20230481 intron Nlg4 + chr3R_28_20230001 chr3R_20230001 RAL-361 3324 chr3R 20238760 20238768 chr3R 20238890 20238898 4 130 27.0 20.0 23.5 0.2 138 chr3R 20238760 intron Nlg4 + chr3R 20238829 intron Nlg4 + chr3R 20238898 intron Nlg4 + chr3R_4_20235001 chr3R_20235001 RAL-361 3325 chr3R 20245235 20245290 chr3R 20248896 20248949 F-element 23 3660 12.5 2.5 7.5 2.7 3714 chr3R 20245235 3` UTR Nlg4 + chr3R 20247092 intergenic not near genes chr3R 20248949 intergenic not near genes chr3R_23_20245001 chr3R_20245001 RAL-361 3326 chr3R 20256789 20256859 chr3R 20256915 20256987 8 127 10.0 16.5 13.2 0.6 198 chr3R 20256789 intron cic + chr3R 20256888 intron cic + chr3R 20256987 intron cic + chr3R_8_20255001 chr3R_20255001 RAL-361 3327 chr3R 20266087 20266137 chr3R 20266272 20266290 6 170 19.5 5.5 12.5 0.4 203 chr3R 20266087 intron cic + chr3R 20266188 intron cic + chr3R 20266290 intron cic + chr3R_6_20265001 chr3R_20265001 RAL-361 3328 chr3R 20266473 20266532 chr3R 20272994 20273053 Burdock 27 6520 10.5 13.0 11.8 2.1 6580 chr3R 20266473 intron cic + chr3R 20269763 intron cic + chr3R 20273053 intron cic + chr3R_27_20265001 chr3R_20265001 RAL-361 3329 chr3R 20282229 20282303 chr3R 20282355 20282429 27 126 3.5 8.0 5.8 4.0 200 chr3R 20282229 intron cic + chr3R 20282329 intron cic + chr3R 20282429 intron cic + chr3R_27_20280001 chr3R_20280001 RAL-361 3330 chr3R 20308147 20308203 chr3R 20308280 20308352 11 141 16.0 13.0 14.5 0.7 205 chr3R 20308147 intergenic not near genes chr3R 20308250 intergenic not near genes chr3R 20308352 intergenic not near genes chr3R_11_20305001 chr3R_20305001 RAL-361 3331 chr3R 20312808 20312882 chr3R 20312944 20313018 13 133 33.0 31.0 32.0 0.4 210 chr3R 20312808 intron CG42668 + chr3R 20312913 intron CG42668 + chr3R 20313018 intron CG42668 + chr3R_13_20310001 chr3R_20310001 RAL-361 3332 chr3R 20330962 20330978 chr3R 20331498 20331514 roo 6 536 16.0 9.5 12.8 0.4 552 chr3R 20330962 intergenic Sirt2 + chr3R 20331238 intergenic Sirt2 + chr3R 20331514 intergenic not near genes chr3R_6_20330001 chr3R_20330001 RAL-361 3333 chr3R 20330980 20331023 chr3R 20331496 20331559 roo 20 535 10.5 9.5 10.0 1.8 579 chr3R 20330980 intergenic Sirt2 + chr3R 20331270 intergenic Sirt2 + chr3R 20331559 intergenic not near genes chr3R_20_20330001 chr3R_20330001 RAL-361 3334 chr3R 20332104 20332162 chr3R 20332422 20332480 17 316 15.0 24.0 19.5 0.8 376 chr3R 20332104 intergenic not near genes chr3R 20332292 intergenic not near genes chr3R 20332480 intergenic not near genes chr3R_17_20330001 chr3R_20330001 RAL-361 3335 chr3R 20433642 20433697 chr3R 20433774 20433830 8 130 22.0 20.0 21.0 0.4 188 chr3R 20433642 intron Gfrl - chr3R 20433736 intron Gfrl - chr3R 20433830 intron Gfrl - chr3R_8_20430001 chr3R_20430001 RAL-361 3336 chr3R 20434793 20434864 chr3R 20435028 20435099 26 235 9.0 7.0 8.0 2.9 306 chr3R 20434793 intron Gfrl - chr3R 20434946 intron Gfrl - chr3R 20435099 intron Gfrl - chr3R_26_20430001 chr3R_20430001 RAL-361 3337 chr3R 20450068 20450139 chr3R 20450198 20450274 6 132 13.5 11.0 12.2 0.5 206 chr3R 20450068 intron Gfrl - chr3R 20450171 intron Gfrl - chr3R 20450274 intron Gfrl - chr3R_6_20450001 chr3R_20450001 RAL-361 3338 chr3R 20467052 20467102 chr3R 20467153 20467208 10 104 18.0 19.0 18.5 0.5 156 chr3R 20467052 intron Gfrl - chr3R 20467130 intron Gfrl - chr3R 20467208 intron Gfrl - chr3R_10_20465001 chr3R_20465001 RAL-361 3339 chr3R 20487898 20487940 chr3R 20488055 20488096 13 159 19.5 16.5 18.0 0.7 198 chr3R 20487898 intergenic not near genes chr3R 20487997 intergenic not near genes chr3R 20488096 intergenic not near genes chr3R_13_20485001 chr3R_20485001 RAL-361 3340 chr3R 20498448 20498481 chr3R 20498580 20498613 7 132 16.5 21.5 19.0 0.3 165 chr3R 20498448 intergenic not near genes chr3R 20498530 intergenic not near genes chr3R 20498613 intergenic not near genes chr3R_7_20495001 chr3R_20495001 RAL-361 3341 chr3R 20512948 20513029 chr3R 20515710 20515782 opus 19 2756 9.0 6.5 7.8 2.2 2834 chr3R 20512948 intergenic CG4288 - chr3R 20514365 intergenic not near genes chr3R 20515782 intergenic not near genes chr3R_19_20510001 chr3R_20510001 RAL-361 3342 chr3R 20553432 20553481 chr3R 20553565 20553620 9 138 17.5 17.0 17.2 0.5 188 chr3R 20553432 intron,intron att-ORFA -,att-ORFB - chr3R 20553526 intron,intron att-ORFA -,att-ORFB - chr3R 20553620 exon,exon att-ORFA -,att-ORFB - chr3R_9_20550001 chr3R_20550001 RAL-361 3343 chr3R 20594436 20594512 chr3R 20594576 20594657 17 141 6.5 0.0 3.2 4.0 221 chr3R 20594436 intron bon + chr3R 20594546 intron bon + chr3R 20594657 intron bon + chr3R_17_20590001 chr3R_20590001 RAL-361 3344 chr3R 20596143 20596212 chr3R 20596280 20596349 26 137 9.5 11.0 10.2 2.3 206 chr3R 20596143 intron bon + chr3R 20596246 intron bon + chr3R 20596349 intron bon + chr3R_26_20595001 chr3R_20595001 RAL-361 3345 chr3R 20601575 20601597 chr3R 20601733 20601756 6 158 25.5 23.0 24.2 0.2 181 chr3R 20601575 intron bon + chr3R 20601666 intron bon + chr3R 20601756 intron bon + chr3R_6_20600001 chr3R_20600001 RAL-361 3346 chr3R 20601601 20601824 chr3R 20601705 20601957 6 134 23.0 22.5 22.8 0.3 356 chr3R 20601601 intron bon + chr3R 20601779 intron bon + chr3R 20601957 intron bon + chr3R_6_20600001 chr3R_20600001 RAL-361 3347 chr3R 20615684 20615714 chr3R 20615805 20615840 6 123 21.0 17.5 19.2 0.3 156 chr3R 20615684 exon CG15923 - chr3R 20615762 intron CG15923 - chr3R 20615840 intron CG15923 - chr3R_6_20615001 chr3R_20615001 RAL-361 3348 chr3R 20617452 20617520 chr3R 20617772 20617828 10 318 25.0 28.0 26.5 0.4 376 chr3R 20617452 intergenic CG5466 + chr3R 20617640 intergenic CG5466 + chr3R 20617828 intergenic CG5466 + chr3R_10_20615001 chr3R_20615001 RAL-361 3349 chr3R 20635046 20635094 chr3R 20635214 20635262 9 167 35.0 28.0 31.5 0.3 216 chr3R 20635046 intergenic Pi3K92E -,Lrrk + chr3R 20635154 intergenic Lrrk +,Pi3K92E - chr3R 20635262 intergenic Lrrk + chr3R_9_20635001 chr3R_20635001 RAL-361 3350 chr3R 20703448 20703500 chr3R 20703887 20703944 11 443 26.5 29.5 28.0 0.4 496 chr3R 20703448 intron Oamb - chr3R 20703696 intron Oamb - chr3R 20703944 intron Oamb - chr3R_11_20700001 chr3R_20700001 RAL-361 3351 chr3R 20705736 20705773 chr3R 20705885 20705922 6 149 10.5 18.5 14.5 0.4 186 chr3R 20705736 intron Oamb - chr3R 20705829 intron Oamb - chr3R 20705922 intron Oamb - chr3R_6_20705001 chr3R_20705001 RAL-361 3352 chr3R 20722810 20722883 chr3R 20722987 20723020 34 167 7.5 8.5 8.0 3.8 210 chr3R 20722810 intergenic not near genes chr3R 20722915 intergenic not near genes chr3R 20723020 intergenic not near genes chr3R_34_20720001 chr3R_20720001 RAL-361 3353 chr3R 20730896 20730956 chr3R 20731037 20731114 12 144 5.0 0.5 2.8 3.2 218 chr3R 20730896 intergenic not near genes chr3R 20731005 intergenic not near genes chr3R 20731114 intergenic not near genes chr3R_12_20730001 chr3R_20730001 RAL-361 3354 chr3R 20769595 20769731 chr3R 20769810 20769873 9 191 14.0 15.0 14.5 0.6 278 chr3R 20769595 intron Syp + chr3R 20769734 intron Syp + chr3R 20769873 intron Syp + chr3R_9_20765001 chr3R_20765001 RAL-361 3355 chr3R 20771703 20771715 chr3R 20771834 20771846 7 131 4.0 23.5 13.8 0.5 143 chr3R 20771703 intron,intron Syp +,Takl1 - chr3R 20771774 intron,intron Syp +,Takl1 - chr3R 20771846 intron,exon Syp +,Takl1 - chr3R_7_20770001 chr3R_20770001 RAL-361 3356 chr3R 20771716 20771718 chr3R 20771832 20771849 4 127 4.0 23.0 13.5 0.3 133 chr3R 20771716 intron,intron Syp +,Takl1 - chr3R 20771782 intron,intron Syp +,Takl1 - chr3R 20771849 intron,exon Syp +,Takl1 - chr3R_4_20770001 chr3R_20770001 RAL-361 3357 chr3R 20787390 20787458 chr3R 20787531 20787599 33 140 11.0 8.0 9.5 3.1 209 chr3R 20787390 intron Syp + chr3R 20787494 intron Syp + chr3R 20787599 intron Syp + chr3R_33_20785001 chr3R_20785001 RAL-361 3358 chr3R 20803486 20803555 chr3R 20803626 20803695 20 140 19.5 16.5 18.0 1.1 209 chr3R 20803486 intron Syp + chr3R 20803590 intron Syp + chr3R 20803695 intron Syp + chr3R_20_20800001 chr3R_20800001 RAL-361 3359 chr3R 20848300 20848358 chr3R 20848440 20848498 6 140 6.5 12.0 9.2 0.6 198 chr3R 20848300 intergenic not near genes chr3R 20848399 intergenic not near genes chr3R 20848498 intergenic not near genes chr3R_6_20845001 chr3R_20845001 RAL-361 3360 chr3R 20850045 20850104 chr3R 20850180 20850239 16 135 17.0 18.0 17.5 0.9 194 chr3R 20850045 intergenic RpS30 + chr3R 20850142 intergenic RpS30 + chr3R 20850239 intergenic RpS30 + chr3R_16_20850001 chr3R_20850001 RAL-361 3361 chr3R 20854427 20854501 chr3R 20859272 20859341 Doc 21 4841 9.5 7.5 8.5 2.2 4914 chr3R 20854427 intron Ir93a - chr3R 20856884 intron Ir93a - chr3R 20859341 exon Ir93a - chr3R_21_20855001 chr3R_20855001 RAL-361 3362 chr3R 20870214 20870240 chr3R 20870349 20870375 7 134 12.5 11.0 11.8 0.5 161 chr3R 20870214 intergenic not near genes chr3R 20870294 intergenic not near genes chr3R 20870375 intergenic not near genes chr3R_7_20870001 chr3R_20870001 RAL-361 3363 chr3R 20870250 20870274 chr3R 20870339 20870395 6 125 14.0 10.5 12.2 0.5 145 chr3R 20870250 intergenic not near genes chr3R 20870322 intergenic not near genes chr3R 20870395 intergenic not near genes chr3R_6_20870001 chr3R_20870001 RAL-361 3364 chr3R 20900494 20900561 chr3R 20900625 20900692 8 131 4.5 4.0 4.2 1.5 198 chr3R 20900494 intergenic not near genes chr3R 20900593 intergenic not near genes chr3R 20900692 intergenic not near genes chr3R_8_20900001 chr3R_20900001 RAL-361 3365 chr3R 20901310 20901365 chr3R 20901431 20901501 18 129 19.0 20.0 19.5 0.9 191 chr3R 20901310 intergenic not near genes chr3R 20901406 intergenic not near genes chr3R 20901501 intergenic CG5621 + chr3R_18_20900001 chr3R_20900001 RAL-361 3366 chr3R 20934346 20934409 chr3R 20934482 20934522 11 129 13.0 6.5 9.8 1.0 176 chr3R 20934346 intron CG31191 - chr3R 20934434 intron CG31191 - chr3R 20934522 intron CG31191 - chr3R_11_20930001 chr3R_20930001 RAL-361 3367 chr3R 20936036 20936109 chr3R 20936163 20936236 9 126 30.0 29.0 29.5 0.3 200 chr3R 20936036 intron CG31191 - chr3R 20936136 intron CG31191 - chr3R 20936236 intron CG31191 - chr3R_9_20935001 chr3R_20935001 RAL-361 3368 chr3R 20942785 20942836 chr3R 20942898 20942954 8 119 12.5 13.0 12.8 0.6 169 chr3R 20942785 intron CG31191 - chr3R 20942870 intron CG31191 - chr3R 20942954 intron CG31191 - chr3R_8_20940001 chr3R_20940001 RAL-361 3369 chr3R 20950249 20950319 chr3R 20950412 20950482 8 163 18.5 21.0 19.8 0.4 233 chr3R 20950249 intron Atpalpha + chr3R 20950366 intron Atpalpha + chr3R 20950482 intron Atpalpha + chr3R_8_20950001 chr3R_20950001 RAL-361 3370 chr3R 20952745 20952792 chr3R 20952875 20952918 13 129 27.0 28.5 27.8 0.5 173 chr3R 20952745 intron Atpalpha + chr3R 20952832 intron Atpalpha + chr3R 20952918 intron Atpalpha + chr3R_13_20950001 chr3R_20950001 RAL-361 3371 chr3R 20979436 20979514 chr3R 20979562 20979640 17 125 13.0 10.5 11.8 1.3 204 chr3R 20979436 intron Calx + chr3R 20979538 intron Calx + chr3R 20979640 intron Calx + chr3R_17_20975001 chr3R_20975001 RAL-361 3372 chr3R 20990685 20990751 chr3R 20990817 20990883 11 132 26.5 25.0 25.8 0.4 198 chr3R 20990685 intron Calx + chr3R 20990784 intron Calx + chr3R 20990883 intron Calx + chr3R_11_20990001 chr3R_20990001 RAL-361 3373 chr3R 20997955 20998015 chr3R 20998094 20998154 8 139 32.0 29.0 30.5 0.3 199 chr3R 20997955 intron Calx + chr3R 20998054 intron Calx + chr3R 20998154 intron Calx + chr3R_8_20995001 chr3R_20995001 RAL-361 3374 chr3R 21067494 21067564 chr3R 21067695 21067765 16 201 21.0 23.0 22.0 0.7 271 chr3R 21067494 exon AnxB9 + chr3R 21067630 intron AnxB9 + chr3R 21067765 intron AnxB9 + chr3R_16_21065001 chr3R_21065001 RAL-361 3375 chr3R 21076258 21076345 chr3R 21076395 21076474 12 130 16.5 19.0 17.8 0.6 216 chr3R 21076258 exon dmrt93B + chr3R 21076366 intron dmrt93B + chr3R 21076474 intron dmrt93B + chr3R_12_21075001 chr3R_21075001 RAL-361 3376 chr3R 21108013 21108064 chr3R 21108324 21108375 10 311 7.5 8.0 7.8 1.1 362 chr3R 21108013 intergenic Sec15 -,rtet + chr3R 21108194 intergenic Sec15 -,rtet + chr3R 21108375 intergenic rtet +,Sec15 - chr3R_10_21105001 chr3R_21105001 RAL-361 3377 chr3R 21129769 21129992 chr3R 21129908 21130137 14 142 13.5 16.0 14.8 0.9 368 chr3R 21129769 intergenic Obp93a -,CG5793 +,Ice2 + chr3R 21129953 intergenic Obp93a -,Ice2 +,CG5793 + chr3R 21130137 intergenic Ice2 +,Obp93a - chr3R_14_21125001 chr3R_21125001 RAL-361 3378 chr3R 21141630 21141707 chr3R 21150161 21150217 Tirant 24 8527 9.5 11.5 10.5 2.1 8587 chr3R 21141630 intron SNF4Agamma + chr3R 21145924 intron SNF4Agamma + chr3R 21150217 intron SNF4Agamma + chr3R_24_21145001 chr3R_21145001 RAL-361 3379 chr3R 21154530 21154579 chr3R 21154795 21154844 9 265 29.5 30.0 29.8 0.3 314 chr3R 21154530 intron SNF4Agamma + chr3R 21154687 intron SNF4Agamma + chr3R 21154844 intron SNF4Agamma + chr3R_9_21150001 chr3R_21150001 RAL-361 3380 chr3R 21159077 21159123 chr3R 21159230 21159276 20 153 9.5 0.0 4.8 3.4 199 chr3R 21159077 intron SNF4Agamma + chr3R 21159176 intron SNF4Agamma + chr3R 21159276 intron,3` UTR SNF4Agamma +,CG10824 - chr3R_20_21155001 chr3R_21155001 RAL-361 3381 chr3R 21165041 21165092 chr3R 21165174 21165225 16 133 28.0 29.0 28.5 0.5 184 chr3R 21165041 intron,exon SNF4Agamma +,CG5810 + chr3R 21165133 intron,3` UTR SNF4Agamma +,CG5810 + chr3R 21165225 intron,3` UTR SNF4Agamma +,Snmp1 - chr3R_16_21165001 chr3R_21165001 RAL-361 3382 chr3R 21176765 21176830 chr3R 21176898 21176960 23 133 12.5 12.0 12.2 1.7 195 chr3R 21176765 intron SNF4Agamma + chr3R 21176862 intron SNF4Agamma + chr3R 21176960 intron SNF4Agamma + chr3R_23_21175001 chr3R_21175001 RAL-361 3383 chr3R 21188011 21188086 chr3R 21188171 21188246 6 159 2.0 0.0 1.0 3.0 235 chr3R 21188011 intron SNF4Agamma + chr3R 21188128 intron SNF4Agamma + chr3R 21188246 intron SNF4Agamma + chr3R_6_21185001 chr3R_21185001 RAL-361 3384 chr3R 21188331 21188415 chr3R 21188463 21188498 13 124 6.5 12.5 9.5 1.2 167 chr3R 21188331 intron SNF4Agamma + chr3R 21188414 intron SNF4Agamma + chr3R 21188498 intron SNF4Agamma + chr3R_13_21185001 chr3R_21185001 RAL-361 3385 chr3R 21189648 21189723 chr3R 21189775 21189851 13 127 19.5 17.0 18.2 0.7 203 chr3R 21189648 intron SNF4Agamma + chr3R 21189750 intron SNF4Agamma + chr3R 21189851 intron SNF4Agamma + chr3R_13_21185001 chr3R_21185001 RAL-361 3386 chr3R 21211549 21211601 chr3R 21211682 21211734 13 133 30.5 37.0 33.8 0.4 185 chr3R 21211549 exon SNF4Agamma + chr3R 21211642 intron SNF4Agamma + chr3R 21211734 intron SNF4Agamma + chr3R_13_21210001 chr3R_21210001 RAL-361 3387 chr3R 21214629 21214662 chr3R 21214914 21214947 9 285 16.5 16.5 16.5 0.5 318 chr3R 21214629 intergenic CG5862 + chr3R 21214788 intergenic CG5862 + chr3R 21214947 intergenic CG5862 + chr3R_9_21210001 chr3R_21210001 RAL-361 3388 chr3R 21238825 21238892 chr3R 21238959 21239025 12 134 25.5 25.5 25.5 0.5 200 chr3R 21238825 intergenic not near genes chr3R 21238925 intergenic not near genes chr3R 21239025 intergenic not near genes chr3R_12_21235001 chr3R_21235001 RAL-361 3389 chr3R 21245805 21245865 chr3R 21245939 21245999 32 134 9.5 4.0 6.8 4.1 194 chr3R 21245805 intergenic CG5892 + chr3R 21245902 intergenic CG5892 + chr3R 21245999 intergenic not near genes chr3R_32_21245001 chr3R_21245001 RAL-361 3390 chr3R 21274343 21274615 chr3R 21274476 21274747 14 141 33.0 31.0 32.0 0.4 404 chr3R 21274343 3` UTR CG3301 - chr3R 21274545 3` UTR CG3301 - chr3R 21274747 intron CG3301 - chr3R_14_21270001 chr3R_21270001 RAL-361 3391 chr3R 21288264 21288316 chr3R 21288394 21288439 7 127 26.0 24.5 25.2 0.3 175 chr3R 21288264 intron SIFaR - chr3R 21288352 intron SIFaR - chr3R 21288439 intron SIFaR - chr3R_7_21285001 chr3R_21285001 RAL-361 3392 chr3R 21322925 21323004 chr3R 21323054 21323136 12 128 13.5 15.5 14.5 0.8 211 chr3R 21322925 exon CG16791 - chr3R 21323030 intron CG16791 - chr3R 21323136 intron CG16791 - chr3R_12_21320001 chr3R_21320001 RAL-361 3393 chr3R 21336804 21336845 chr3R 21337066 21337107 6 262 11.5 20.5 16.0 0.4 303 chr3R 21336804 intron CG16791 - chr3R 21336956 intron CG16791 - chr3R 21337107 intron CG16791 - chr3R_6_21335001 chr3R_21335001 RAL-361 3394 chr3R 21343784 21343832 chr3R 21343927 21343975 14 143 29.0 27.0 28.0 0.5 191 chr3R 21343784 intron CG16791 - chr3R 21343880 intron CG16791 - chr3R 21343975 intron CG16791 - chr3R_14_21340001 chr3R_21340001 RAL-361 3395 chr3R 21346448 21346509 chr3R 21346586 21346647 4 135 27.0 28.0 27.5 0.1 199 chr3R 21346448 intron CG16791 - chr3R 21346548 intron CG16791 - chr3R 21346647 intron CG16791 - chr3R_4_21345001 chr3R_21345001 RAL-361 3396 chr3R 21352004 21352013 chr3R 21352239 21352248 4 235 25.5 24.0 24.8 0.2 244 chr3R 21352004 intron mod(mdg4) - chr3R 21352126 intron mod(mdg4) - chr3R 21352248 intron mod(mdg4) - chr3R_4_21350001 chr3R_21350001 RAL-361 3397 chr3R 21383266 21383285 chr3R 21383392 21383411 5 126 26.0 29.0 27.5 0.2 145 chr3R 21383266 intergenic not near genes chr3R 21383338 intergenic not near genes chr3R 21383411 intergenic not near genes chr3R_5_21380001 chr3R_21380001 RAL-361 3398 chr3R 21385882 21385949 chr3R 21386009 21386076 8 127 22.0 22.5 22.2 0.3 194 chr3R 21385882 intergenic not near genes chr3R 21385979 intergenic not near genes chr3R 21386076 intergenic not near genes chr3R_8_21385001 chr3R_21385001 RAL-361 3399 chr3R 21390391 21390403 chr3R 21390525 21390537 4 134 32.0 15.5 23.8 0.2 146 chr3R 21390391 3` UTR bap + chr3R 21390464 intergenic bap + chr3R 21390537 intergenic bap + chr3R_4_21390001 chr3R_21390001 RAL-361 3400 chr3R 21393457 21393486 chr3R 21393617 21393646 10 160 29.0 24.0 26.5 0.4 189 chr3R 21393457 intergenic not near genes chr3R 21393552 intergenic not near genes chr3R 21393646 intergenic not near genes chr3R_10_21390001 chr3R_21390001 RAL-361 3401 chr3R 21408823 21408868 chr3R 21408940 21408997 9 127 6.5 17.5 12.0 0.7 174 chr3R 21408823 intergenic CheB93b +,CheB93a + chr3R 21408910 intergenic CheB93b + chr3R 21408997 intergenic CheB93b + chr3R_9_21405001 chr3R_21405001 RAL-361 3402 chr3R 21418913 21419123 chr3R 21419054 21419253 11 137 14.0 8.0 11.0 0.9 340 chr3R 21418913 intron lbl - chr3R 21419083 intron lbl - chr3R 21419253 intron lbl - chr3R_11_21415001 chr3R_21415001 RAL-361 3403 chr3R 21422847 21422909 chr3R 21423033 21423095 8 186 16.5 0.0 8.2 0.9 248 chr3R 21422847 intron lbl - chr3R 21422971 intron lbl - chr3R 21423095 intron lbl - chr3R_8_21420001 chr3R_21420001 RAL-361 3404 chr3R 21441332 21441407 chr3R 21441465 21441544 12 136 15.0 20.0 17.5 0.6 212 chr3R 21441332 intergenic lbe - chr3R 21441438 intergenic lbe - chr3R 21441544 intergenic lbe - chr3R_12_21440001 chr3R_21440001 RAL-361 3405 chr3R 21451586 21451649 chr3R 21451917 21451983 5 320 5.0 21.5 13.2 0.4 397 chr3R 21451586 intergenic not near genes chr3R 21451784 intergenic not near genes chr3R 21451983 intergenic not near genes chr3R_5_21450001 chr3R_21450001 RAL-361 3406 chr3R 21471971 21472028 chr3R 21472102 21472159 24 131 13.5 7.5 10.5 2.1 188 chr3R 21471971 intergenic not near genes chr3R 21472065 intergenic not near genes chr3R 21472159 intergenic not near genes chr3R_24_21470001 chr3R_21470001 RAL-361 3407 chr3R 21475948 21476017 chr3R 21476084 21476123 18 132 18.5 18.5 18.5 0.9 175 chr3R 21475948 intergenic not near genes chr3R 21476036 intergenic not near genes chr3R 21476123 intergenic not near genes chr3R_18_21475001 chr3R_21475001 RAL-361 3408 chr3R 21479000 21479051 chr3R 21479351 21479402 16 351 8.0 9.5 8.8 1.6 402 chr3R 21479000 intergenic not near genes chr3R 21479201 intergenic not near genes chr3R 21479402 intergenic not near genes chr3R_16_21475001 chr3R_21475001 RAL-361 3409 chr3R 21506824 21506908 chr3R 21506960 21507038 20 135 23.0 23.0 23.0 0.8 214 chr3R 21506824 intron C15 + chr3R 21506931 intron C15 + chr3R 21507038 intron C15 + chr3R_20_21505001 chr3R_21505001 RAL-361 3410 chr3R 21516273 21516341 chr3R 21516396 21516471 21 128 20.0 16.5 18.2 1.1 198 chr3R 21516273 intergenic not near genes chr3R 21516372 intergenic not near genes chr3R 21516471 intergenic not near genes chr3R_21_21515001 chr3R_21515001 RAL-361 3411 chr3R 21519938 21520128 chr3R 21520089 21520272 39 152 0.0 0.0 0.0 39.0 334 chr3R 21519938 intergenic not near genes chr3R 21520105 intergenic not near genes chr3R 21520272 intergenic not near genes chr3R_39_21520001 chr3R_21520001 RAL-361 3412 chr3R 21546854 21546916 chr3R 21547022 21547084 9 165 11.0 13.0 12.0 0.7 230 chr3R 21546854 intergenic not near genes chr3R 21546969 intergenic not near genes chr3R 21547084 intergenic not near genes chr3R_9_21545001 chr3R_21545001 RAL-361 3413 chr3R 21582518 21582557 chr3R 21582648 21582687 8 129 26.5 30.0 28.2 0.3 169 chr3R 21582518 intron InR - chr3R 21582602 intron InR - chr3R 21582687 intron InR - chr3R_8_21580001 chr3R_21580001 RAL-361 3414 chr3R 21582561 21582578 chr3R 21582644 21582708 4 118 24.0 28.0 26.0 0.1 147 chr3R 21582561 intron InR - chr3R 21582634 intron InR - chr3R 21582708 intron InR - chr3R_4_21580001 chr3R_21580001 RAL-361 3415 chr3R 21586377 21586433 chr3R 21586511 21586567 9 134 36.5 32.5 34.5 0.3 190 chr3R 21586377 intron InR - chr3R 21586472 intron InR - chr3R 21586567 intron InR - chr3R_9_21585001 chr3R_21585001 RAL-361 3416 chr3R 21608963 21609026 chr3R 21611647 21611703 NOF 13 2678 23.5 22.0 22.8 0.5 2740 chr3R 21608963 intron InR - chr3R 21610333 intron InR - chr3R 21611703 intron InR - chr3R_13_21610001 chr3R_21610001 RAL-361 3417 chr3R 21624063 21624119 chr3R 21624207 21624248 8 142 15.5 21.5 18.5 0.4 185 chr3R 21624063 exon E2f - chr3R 21624156 intron E2f - chr3R 21624248 intron E2f - chr3R_8_21620001 chr3R_21620001 RAL-361 3418 chr3R 21659573 21659644 chr3R 21659713 21659786 7 141 25.5 25.0 25.2 0.3 213 chr3R 21659573 intron E2f - chr3R 21659680 intron E2f - chr3R 21659786 intron E2f - chr3R_7_21655001 chr3R_21655001 RAL-361 3419 chr3R 21682976 21683033 chr3R 21683117 21683174 21 141 14.0 11.0 12.5 1.6 198 chr3R 21682976 intron CG31176 - chr3R 21683075 intron CG31176 - chr3R 21683174 intron CG31176 - chr3R_21_21680001 chr3R_21680001 RAL-361 3420 chr3R 21699550 21699626 chr3R 21699677 21699752 10 127 21.5 17.0 19.2 0.5 202 chr3R 21699550 intron CG31176 - chr3R 21699651 intron CG31176 - chr3R 21699752 intron CG31176 - chr3R_10_21695001 chr3R_21695001 RAL-361 3421 chr3R 21722424 21722481 chr3R 21722550 21722607 7 125 30.0 24.5 27.2 0.2 183 chr3R 21722424 intron CR44096 + chr3R 21722516 intron CR44096 + chr3R 21722607 intron CR44096 + chr3R_7_21720001 chr3R_21720001 RAL-361 3422 chr3R 21725642 21725682 chr3R 21725827 21725868 7 186 0.0 15.0 7.5 0.8 226 chr3R 21725642 intergenic not near genes chr3R 21725755 intergenic not near genes chr3R 21725868 intergenic not near genes chr3R_7_21725001 chr3R_21725001 RAL-361 3423 chr3R 21733640 21733650 chr3R 21733818 21733828 8 178 39.0 33.0 36.0 0.2 188 chr3R 21733640 intergenic not near genes chr3R 21733734 intergenic not near genes chr3R 21733828 intergenic not near genes chr3R_8_21730001 chr3R_21730001 RAL-361 3424 chr3R 21733947 21734032 chr3R 21734100 21734161 4 147 0.5 7.0 3.8 0.8 214 chr3R 21733947 intergenic not near genes chr3R 21734054 intergenic not near genes chr3R 21734161 intergenic not near genes chr3R_4_21730001 chr3R_21730001 RAL-361 3425 chr3R 21761082 21761151 chr3R 21768519 21768574 mdg1 32 7438 12.0 7.0 9.5 3.0 7492 chr3R 21761082 exon CG42335 + chr3R 21764828 intron CG42335 + chr3R 21768574 exon CG42335 + chr3R_32_21760001 chr3R_21760001 RAL-361 3426 chr3R 21784795 21784887 chr3R 21784926 21785035 10 138 8.0 3.5 5.8 1.5 240 chr3R 21784795 3` UTR,3` UTR CASK -,CRG - chr3R 21784915 3` UTR,3` UTR CASK -,CRG - chr3R 21785035 3` UTR,3` UTR CASK -,CRG - chr3R_10_21780001 chr3R_21780001 RAL-361 3427 chr3R 21792174 21792224 chr3R 21792303 21792353 9 128 33.0 35.5 34.2 0.3 179 chr3R 21792174 intron CASK - chr3R 21792264 intron CASK - chr3R 21792353 intron CASK - chr3R_9_21790001 chr3R_21790001 RAL-361 3428 chr3R 21800450 21800520 chr3R 21800585 21800644 17 134 18.0 20.5 19.2 0.8 194 chr3R 21800450 intron CASK - chr3R 21800547 intron CASK - chr3R 21800644 intron CASK - chr3R_17_21800001 chr3R_21800001 RAL-361 3429 chr3R 21801509 21801545 chr3R 21801668 21801704 7 155 21.0 20.5 20.8 0.3 195 chr3R 21801509 intron CASK - chr3R 21801606 intron CASK - chr3R 21801704 intron CASK - chr3R_7_21800001 chr3R_21800001 RAL-361 3430 chr3R 21820136 21820183 chr3R 21820375 21820422 6 239 25.0 25.5 25.2 0.2 286 chr3R 21820136 intron CASK - chr3R 21820279 intron CASK - chr3R 21820422 intron CASK - chr3R_6_21820001 chr3R_21820001 RAL-361 3431 chr3R 21903497 21903634 chr3R 21903627 21903781 10 143 0.0 0.0 0.0 10.0 284 chr3R 21903497 intron CG6678 + chr3R 21903639 intron CG6678 + chr3R 21903781 intron CG6678 + chr3R_10_21900001 chr3R_21900001 RAL-361 3432 chr3R 17389054 17389054 chr3R 21907534 21907534 5 4518480 22.5 36.0 29.2 0.2 4518480 chr3R 17389054 intron,3` UTR Brf -,lute + chr3R 19648294 5` UTR CG6195 - chr3R 21907534 intergenic CG6678 + chr3R_5_19645001 chr3R_19645001 RAL-361 3433 chr3R 21907534 21907534 chr3R 24389465 24389465 6 2481931 35.0 30.0 32.5 0.2 2481931 chr3R 21907534 intergenic CG6678 + chr3R 23148500 intergenic not near genes chr3R 24389465 intron CG5768 - chr3R_6_23145001 chr3R_23145001 RAL-361 3434 chr3R 21907534 21907534 chr3R 26659333 26659335 4 4751800 35.0 25.0 30.0 0.1 4751801 chr3R 21907534 intergenic CG6678 + chr3R 24283434 intergenic CR45662 - chr3R 26659335 intron beat-VII - chr3R_4_24280001 chr3R_24280001 RAL-361 3435 chr3R 21907534 21907534 chr3R 28831801 28831802 19 6924268 35.0 26.5 30.8 0.6 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_19_25365001 chr3R_25365001 RAL-361 3436 chr3R 8339246 8339247 chr3R 21907535 21907535 11 13568289 36.0 35.5 35.8 0.3 13568289 chr3R 8339246 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907535 intergenic CG6678 + chr3R_11_15120001 chr3R_15120001 RAL-361 3437 chr3R 9620955 9620956 chr3R 21907535 21907535 7 12286579 24.0 35.5 29.8 0.2 12286580 chr3R 9620955 intron CG8312 + chr3R 15764245 intergenic not near genes chr3R 21907535 intergenic CG6678 + chr3R_7_15760001 chr3R_15760001 RAL-361 3438 chr3R 21907535 21907535 chr3R 26659333 26659335 7 4751799 35.5 25.0 30.2 0.2 4751800 chr3R 21907535 intergenic CG6678 + chr3R 24283435 intergenic CR45662 - chr3R 26659335 intron beat-VII - chr3R_7_24280001 chr3R_24280001 RAL-361 3439 chr3R 21907535 21907535 chr3R 28831801 28831802 38 6924267 35.5 26.5 31.0 1.2 6924267 chr3R 21907535 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_38_25365001 chr3R_25365001 RAL-361 3440 chr3R 21907536 21907536 chr3R 26659334 26659335 4 4751799 35.5 25.0 30.2 0.1 4751799 chr3R 21907536 intergenic CG6678 + chr3R 24283436 intergenic CR45662 - chr3R 26659335 intron beat-VII - chr3R_4_24280001 chr3R_24280001 RAL-361 3441 chr3R 21907536 21907536 chr3R 28831801 28831802 39 6924266 35.5 26.5 31.0 1.2 6924266 chr3R 21907536 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831802 intron WASp - chr3R_39_25365001 chr3R_25365001 RAL-361 3442 chr3R 21947322 21947366 chr3R 21947430 21947494 10 122 29.5 25.0 27.2 0.4 172 chr3R 21947322 intergenic not near genes chr3R 21947408 intergenic not near genes chr3R 21947494 intergenic not near genes chr3R_10_21945001 chr3R_21945001 RAL-361 3443 chr3R 21953177 21953196 chr3R 21953322 21953341 5 145 14.0 25.5 19.8 0.2 164 chr3R 21953177 intron Eip93F + chr3R 21953259 intron Eip93F + chr3R 21953341 intron Eip93F + chr3R_5_21950001 chr3R_21950001 RAL-361 3444 chr3R 21985183 21985258 chr3R 21985338 21985410 16 153 17.0 15.5 16.2 0.9 227 chr3R 21985183 intron Eip93F + chr3R 21985296 intron Eip93F + chr3R 21985410 intron Eip93F + chr3R_16_21985001 chr3R_21985001 RAL-361 3445 chr3R 22084568 22084621 chr3R 22084707 22084760 16 135 3.5 7.5 5.5 2.5 192 chr3R 22084568 intergenic not near genes chr3R 22084664 intergenic not near genes chr3R 22084760 intergenic not near genes chr3R_16_22080001 chr3R_22080001 RAL-361 3446 chr3R 22097118 22097159 chr3R 22097486 22097553 9 375 11.0 19.0 15.0 0.6 435 chr3R 22097118 intron CG5778 - chr3R 22097336 intron CG5778 - chr3R 22097553 intron CG5778 - chr3R_9_22095001 chr3R_22095001 RAL-361 3447 chr3R 22117375 22117423 chr3R 22117501 22117549 8 125 24.0 20.5 22.2 0.3 174 chr3R 22117375 intergenic Ir94b -,Ir94c - chr3R 22117462 intergenic Ir94c -,Ir94b - chr3R 22117549 intergenic Ir94c -,Ir94b - chr3R_8_22115001 chr3R_22115001 RAL-361 3448 chr3R 22123723 22123783 chr3R 22123842 22123910 10 121 12.5 14.0 13.2 0.7 187 chr3R 22123723 intron CG42390 + chr3R 22123816 intron CG42390 + chr3R 22123910 intron CG42390 + chr3R_10_22120001 chr3R_22120001 RAL-361 3449 chr3R 22234042 22234097 chr3R 22234169 22234224 19 124 17.5 19.0 18.2 1.0 182 chr3R 22234042 intron SKIP + chr3R 22234133 intron SKIP + chr3R 22234224 intron SKIP + chr3R_19_22230001 chr3R_22230001 RAL-361 3450 chr3R 22234637 22234713 chr3R 22236006 22236080 pogo 26 1369 7.0 7.5 7.2 3.2 1443 chr3R 22234637 intron SKIP + chr3R 22235358 intron SKIP + chr3R 22236080 intron SKIP + chr3R_26_22235001 chr3R_22235001 RAL-361 3451 chr3R 22239485 22239525 chr3R 22248583 22248623 roo 16 9098 8.5 11.0 9.8 1.5 9138 chr3R 22239485 intron SKIP + chr3R 22244054 intron SKIP + chr3R 22248623 intron SKIP + chr3R_16_22240001 chr3R_22240001 RAL-361 3452 chr3R 22272301 22272368 chr3R 22272433 22272500 21 131 13.5 15.0 14.2 1.4 199 chr3R 22272301 intron SKIP + chr3R 22272400 intron SKIP + chr3R 22272500 intron SKIP + chr3R_21_22270001 chr3R_22270001 RAL-361 3453 chr3R 22283060 22283130 chr3R 22283197 22283262 12 135 26.0 23.0 24.5 0.5 202 chr3R 22283060 intron SKIP + chr3R 22283161 intron SKIP + chr3R 22283262 intron SKIP + chr3R_12_22280001 chr3R_22280001 RAL-361 3454 chr3R 22286095 22286160 chr3R 22286222 22286287 12 123 11.5 12.5 12.0 0.9 192 chr3R 22286095 intron SKIP + chr3R 22286191 intron SKIP + chr3R 22286287 intron SKIP + chr3R_12_22285001 chr3R_22285001 RAL-361 3455 chr3R 22318945 22318984 chr3R 22319064 22319110 7 125 18.5 21.5 20.0 0.3 165 chr3R 22318945 5` UTR CG34377 - chr3R 22319028 intron CG34377 - chr3R 22319110 intron CG34377 - chr3R_7_22315001 chr3R_22315001 RAL-361 3456 chr3R 22338856 22338886 chr3R 22339076 22339106 5 220 16.0 18.5 17.2 0.3 250 chr3R 22338856 intron CG5388 - chr3R 22338981 intron CG5388 - chr3R 22339106 intron CG5388 - chr3R_5_22335001 chr3R_22335001 RAL-361 3457 chr3R 22346138 22346209 chr3R 22346274 22346343 14 132 8.0 8.0 8.0 1.6 205 chr3R 22346138 intergenic not near genes chr3R 22346240 intergenic not near genes chr3R 22346343 intergenic not near genes chr3R_14_22345001 chr3R_22345001 RAL-361 3458 chr3R 22347828 22347903 chr3R 22347956 22348031 7 128 1.5 3.0 2.2 2.2 203 chr3R 22347828 intergenic not near genes chr3R 22347930 intergenic not near genes chr3R 22348031 intergenic not near genes chr3R_7_22345001 chr3R_22345001 RAL-361 3459 chr3R 22349252 22349295 chr3R 22349411 22349454 8 159 8.0 16.0 12.0 0.6 202 chr3R 22349252 intergenic not near genes chr3R 22349353 intergenic not near genes chr3R 22349454 intergenic not near genes chr3R_8_22345001 chr3R_22345001 RAL-361 3460 chr3R 22428537 22428602 chr3R 22428663 22428728 24 124 19.0 17.0 18.0 1.3 191 chr3R 22428537 intron CG13847 - chr3R 22428632 intron CG13847 - chr3R 22428728 intron CG13847 - chr3R_24_22425001 chr3R_22425001 RAL-361 3461 chr3R 22433063 22433090 chr3R 22433197 22433240 15 148 16.5 10.5 13.5 1.0 177 chr3R 22433063 intron CG13847 - chr3R 22433152 intron CG13847 - chr3R 22433240 intron CG13847 - chr3R_15_22430001 chr3R_22430001 RAL-361 3462 chr3R 22437755 22437819 chr3R 22437895 22437959 21 140 13.5 19.0 16.2 1.2 204 chr3R 22437755 intergenic not near genes chr3R 22437857 intergenic not near genes chr3R 22437959 intergenic not near genes chr3R_21_22435001 chr3R_22435001 RAL-361 3463 chr3R 22450501 22450567 chr3R 22453191 22453257 NOF 27 2688 12.5 11.0 11.8 2.1 2756 chr3R 22450501 intron CG34376 + chr3R 22451879 intron CG34376 + chr3R 22453257 intron CG34376 + chr3R_27_22450001 chr3R_22450001 RAL-361 3464 chr3R 22493727 22493749 chr3R 22494159 22494181 4 432 61.0 26.0 43.5 0.1 454 chr3R 22493727 3` UTR CG7046 + chr3R 22493954 intergenic CG7046 + chr3R 22494181 intergenic CG7046 + chr3R_4_22490001 chr3R_22490001 RAL-361 3465 chr3R 22526256 22526325 chr3R 22526387 22526457 11 131 29.5 30.5 30.0 0.4 201 chr3R 22526256 intron CG5346 - chr3R 22526356 intron CG5346 - chr3R 22526457 intron CG5346 - chr3R_11_22525001 chr3R_22525001 RAL-361 3466 chr3R 22533949 22533974 chr3R 22534074 22534107 5 127 13.0 16.0 14.5 0.3 158 chr3R 22533949 intron CG5326 - chr3R 22534028 intron CG5326 - chr3R 22534107 intron CG5326 - chr3R_5_22530001 chr3R_22530001 RAL-361 3467 chr3R 22538396 22538472 chr3R 22538531 22538602 23 133 15.5 20.5 18.0 1.2 206 chr3R 22538396 intron CG5326 - chr3R 22538499 intron CG5326 - chr3R 22538602 intron CG5326 - chr3R_23_22535001 chr3R_22535001 RAL-361 3468 chr3R 22591834 22591875 chr3R 22591977 22592013 12 142 22.5 18.0 20.2 0.6 179 chr3R 22591834 intron Efa6 + chr3R 22591924 intron Efa6 + chr3R 22592013 intron Efa6 + chr3R_12_22590001 chr3R_22590001 RAL-361 3469 chr3R 22593886 22593916 chr3R 22594028 22594039 7 137 25.5 27.5 26.5 0.3 153 chr3R 22593886 intron Efa6 + chr3R 22593962 intron Efa6 + chr3R 22594039 intron Efa6 + chr3R_7_22590001 chr3R_22590001 RAL-361 3470 chr3R 22636641 22636678 chr3R 22636768 22636800 9 126 18.0 20.0 19.0 0.5 159 chr3R 22636641 intron loco - chr3R 22636720 intron loco - chr3R 22636800 exon loco - chr3R_9_22635001 chr3R_22635001 RAL-361 3471 chr3R 22663478 22663539 chr3R 22663605 22663619 16 123 23.5 24.5 24.0 0.6 141 chr3R 22663478 intron wake + chr3R 22663548 intron wake + chr3R 22663619 intron wake + chr3R_16_22660001 chr3R_22660001 RAL-361 3472 chr3R 22665247 22665284 chr3R 22665367 22665410 7 124 25.5 32.0 28.8 0.2 163 chr3R 22665247 exon wake + chr3R 22665328 intron wake + chr3R 22665410 intron wake + chr3R_7_22665001 chr3R_22665001 RAL-361 3473 chr3R 22667130 22667197 chr3R 22667262 22667327 5 131 18.0 24.0 21.0 0.2 197 chr3R 22667130 intron wake + chr3R 22667228 intron wake + chr3R 22667327 intron wake + chr3R_5_22665001 chr3R_22665001 RAL-361 3474 chr3R 22684157 22684222 chr3R 22684283 22684340 14 124 25.0 22.0 23.5 0.6 183 chr3R 22684157 intergenic not near genes chr3R 22684248 intergenic not near genes chr3R 22684340 intergenic not near genes chr3R_14_22680001 chr3R_22680001 RAL-361 3475 chr3R 22742566 22742630 chr3R 22742708 22742772 22 137 23.5 23.5 23.5 0.9 206 chr3R 22742566 exon CG6985 + chr3R 22742669 exon CG6985 + chr3R 22742772 intron CG6985 + chr3R_22_22740001 chr3R_22740001 RAL-361 3476 chr3R 22769065 22769118 chr3R 22769192 22769240 20 124 23.5 26.0 24.8 0.8 175 chr3R 22769065 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769152 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769240 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R_20_22765001 chr3R_22765001 RAL-361 3477 chr3R 22778339 22778415 chr3R 22778535 22778609 24 195 10.0 11.5 10.8 2.0 270 chr3R 22778339 intron,3` UTR CG7029 +,CR43654 - chr3R 22778474 intron,3` UTR CG7029 +,CR43654 - chr3R 22778609 intron,3` UTR CG7029 +,CR43654 - chr3R_24_22775001 chr3R_22775001 RAL-361 3478 chr3R 22820359 22820431 chr3R 22820492 22820564 26 132 21.0 21.5 21.2 1.2 205 chr3R 22820359 intergenic not near genes chr3R 22820462 intergenic not near genes chr3R 22820564 intergenic not near genes chr3R_26_22820001 chr3R_22820001 RAL-361 3479 chr3R 22840405 22840462 chr3R 22840533 22840590 7 126 17.0 17.5 17.2 0.4 185 chr3R 22840405 intergenic not near genes chr3R 22840498 intergenic not near genes chr3R 22840590 intergenic not near genes chr3R_7_22840001 chr3R_22840001 RAL-361 3480 chr3R 22867265 22867326 chr3R 22867392 22867453 9 127 25.5 28.0 26.8 0.3 188 chr3R 22867265 intergenic not near genes chr3R 22867359 intergenic not near genes chr3R 22867453 intergenic not near genes chr3R_9_22865001 chr3R_22865001 RAL-361 3481 chr3R 22871385 22871430 chr3R 22871568 22871613 9 183 24.5 22.0 23.2 0.4 228 chr3R 22871385 intergenic not near genes chr3R 22871499 intergenic not near genes chr3R 22871613 intergenic not near genes chr3R_9_22870001 chr3R_22870001 RAL-361 3482 chr3R 22880558 22880609 chr3R 22880685 22880736 12 123 10.5 9.0 9.8 1.1 178 chr3R 22880558 intergenic not near genes chr3R 22880647 intergenic not near genes chr3R 22880736 intergenic not near genes chr3R_12_22880001 chr3R_22880001 RAL-361 3483 chr3R 22880885 22880949 chr3R 22881073 22881137 30 188 10.0 7.5 8.8 3.1 252 chr3R 22880885 intergenic not near genes chr3R 22881011 intergenic not near genes chr3R 22881137 intergenic not near genes chr3R_30_22880001 chr3R_22880001 RAL-361 3484 chr3R 22881192 22881231 chr3R 22884947 22884986 Doc 13 3755 5.5 17.0 11.2 1.1 3794 chr3R 22881192 intergenic not near genes chr3R 22883089 intergenic not near genes chr3R 22884986 intergenic not near genes chr3R_13_22880001 chr3R_22880001 RAL-361 3485 chr3R 22887790 22887871 chr3R 22887918 22887999 19 126 13.0 12.0 12.5 1.4 209 chr3R 22887790 intergenic not near genes chr3R 22887894 intergenic not near genes chr3R 22887999 intergenic not near genes chr3R_19_22885001 chr3R_22885001 RAL-361 3486 chr3R 22945920 22945957 chr3R 22946050 22946087 12 130 8.0 10.0 9.0 1.2 167 chr3R 22945920 intron klg + chr3R 22946004 intron klg + chr3R 22946087 intron klg + chr3R_12_22945001 chr3R_22945001 RAL-361 3487 chr3R 22951904 22951973 chr3R 22952031 22952100 13 120 19.0 19.5 19.2 0.6 196 chr3R 22951904 intron klg + chr3R 22952002 intron klg + chr3R 22952100 intron klg + chr3R_13_22950001 chr3R_22950001 RAL-361 3488 chr3R 22954465 22954529 chr3R 22954612 22954681 15 151 24.0 23.0 23.5 0.6 216 chr3R 22954465 intron klg + chr3R 22954573 intron klg + chr3R 22954681 intron klg + chr3R_15_22950001 chr3R_22950001 RAL-361 3489 chr3R 22974263 22974277 chr3R 22974391 22974411 6 133 16.0 24.5 20.2 0.3 148 chr3R 22974263 intergenic not near genes chr3R 22974337 intergenic not near genes chr3R 22974411 intergenic not near genes chr3R_6_22970001 chr3R_22970001 RAL-361 3490 chr3R 22974283 22974311 chr3R 22974375 22974445 8 129 17.0 22.0 19.5 0.4 162 chr3R 22974283 intergenic not near genes chr3R 22974364 intergenic not near genes chr3R 22974445 intergenic not near genes chr3R_8_22970001 chr3R_22970001 RAL-361 3491 chr3R 22979704 22979777 chr3R 22979835 22979908 20 125 15.0 17.0 16.0 1.2 204 chr3R 22979704 intergenic not near genes chr3R 22979806 intergenic not near genes chr3R 22979908 intergenic not near genes chr3R_20_22975001 chr3R_22975001 RAL-361 3492 chr3R 22989260 22989307 chr3R 22989733 22989780 7 473 26.0 16.5 21.2 0.3 520 chr3R 22989260 intron Nha2 - chr3R 22989520 intron,exon Nha2 -,Or94b + chr3R 22989780 intron,exon Nha2 -,Or94b + chr3R_7_22985001 chr3R_22985001 RAL-361 3493 chr3R 23001574 23001641 chr3R 23001725 23001792 13 151 29.5 23.0 26.2 0.5 218 chr3R 23001574 exon CG34375 - chr3R 23001683 intron CG34375 - chr3R 23001792 intron CG34375 - chr3R_13_23000001 chr3R_23000001 RAL-361 3494 chr3R 23038828 23038849 chr3R 23038982 23039003 4 154 15.0 21.5 18.2 0.2 175 chr3R 23038828 intergenic not near genes chr3R 23038916 intergenic not near genes chr3R 23039003 intergenic not near genes chr3R_4_23035001 chr3R_23035001 RAL-361 3495 chr3R 23043171 23043231 chr3R 23043336 23043396 15 163 24.0 25.0 24.5 0.6 225 chr3R 23043171 intergenic not near genes chr3R 23043284 intergenic not near genes chr3R 23043396 intergenic not near genes chr3R_15_23040001 chr3R_23040001 RAL-361 3496 chr3R 23067486 23067545 chr3R 23067623 23067682 16 137 31.0 32.0 31.5 0.5 196 chr3R 23067486 intergenic CG17111 - chr3R 23067584 intergenic CG17111 - chr3R 23067682 intergenic CG17111 - chr3R_16_23065001 chr3R_23065001 RAL-361 3497 chr3R 23070608 23070699 chr3R 23070738 23070827 15 136 5.0 4.0 4.5 2.7 219 chr3R 23070608 3` UTR CG13830 - chr3R 23070718 3` UTR CG13830 - chr3R 23070827 3` UTR CG13830 - chr3R_15_23070001 chr3R_23070001 RAL-361 3498 chr3R 23073621 23073627 chr3R 23073760 23073766 5 139 10.0 7.5 8.8 0.5 145 chr3R 23073621 intron CG13830 - chr3R 23073694 intron CG13830 - chr3R 23073766 intron CG13830 - chr3R_5_23070001 chr3R_23070001 RAL-361 3499 chr3R 23073633 23073683 chr3R 23073742 23073822 16 129 6.5 5.0 5.8 2.4 189 chr3R 23073633 intron CG13830 - chr3R 23073728 intron CG13830 - chr3R 23073822 intron CG13830 - chr3R_16_23070001 chr3R_23070001 RAL-361 3500 chr3R 23090357 23090425 chr3R 23090490 23090558 11 133 29.5 31.0 30.2 0.4 201 chr3R 23090357 intron CG13830 - chr3R 23090458 intron CG13830 - chr3R 23090558 intron CG13830 - chr3R_11_23090001 chr3R_23090001 RAL-361 3501 chr3R 23100104 23100391 chr3R 23100241 23100522 8 134 29.0 23.0 26.0 0.3 418 chr3R 23100104 intron,exon CG13830 -,CG6738 + chr3R 23100313 intron,exon CG13830 -,CG6738 + chr3R 23100522 intron,exon CG13830 -,CG6738 + chr3R_8_23100001 chr3R_23100001 RAL-361 3502 chr3R 23171763 23171816 chr3R 23171893 23171925 6 126 20.5 18.5 19.5 0.3 162 chr3R 23171763 intron Irk1 + chr3R 23171844 intron Irk1 + chr3R 23171925 intron Irk1 + chr3R_6_23170001 chr3R_23170001 RAL-361 3503 chr3R 23182655 23182693 chr3R 23182788 23182826 5 133 32.0 31.0 31.5 0.2 171 chr3R 23182655 intron Irk1 + chr3R 23182740 intron Irk1 + chr3R 23182826 intron Irk1 + chr3R_5_23180001 chr3R_23180001 RAL-361 3504 chr3R 23214206 23214253 chr3R 23214336 23214379 7 134 18.0 7.0 12.5 0.5 173 chr3R 23214206 intron cnc - chr3R 23214292 intron cnc - chr3R 23214379 intron cnc - chr3R_7_23210001 chr3R_23210001 RAL-361 3505 chr3R 23225012 23225035 chr3R 23225138 23225161 5 126 9.5 0.0 4.8 0.9 149 chr3R 23225012 intron cnc - chr3R 23225086 intron cnc - chr3R 23225161 intron cnc - chr3R_5_23225001 chr3R_23225001 RAL-361 3506 chr3R 23242244 23242320 chr3R 23242374 23242444 15 124 6.5 1.5 4.0 3.0 200 chr3R 23242244 intron CG4467 - chr3R 23242344 intron CG4467 - chr3R 23242444 intron CG4467 - chr3R_15_23240001 chr3R_23240001 RAL-361 3507 chr3R 23245963 23245991 chr3R 23246095 23246122 7 130 18.5 22.0 20.2 0.3 159 chr3R 23245963 intron CG4467 - chr3R 23246042 intron CG4467 - chr3R 23246122 intron CG4467 - chr3R_7_23245001 chr3R_23245001 RAL-361 3508 chr3R 23318358 23318397 chr3R 23318494 23318557 4 142 7.5 8.5 8.0 0.4 199 chr3R 23318358 intron pnt - chr3R 23318458 intron pnt - chr3R 23318557 intron pnt - chr3R_4_23315001 chr3R_23315001 RAL-361 3509 chr3R 23319657 23319672 chr3R 23319784 23319801 6 129 30.0 35.0 32.5 0.2 144 chr3R 23319657 intron pnt - chr3R 23319729 intron pnt - chr3R 23319801 intron pnt - chr3R_6_23315001 chr3R_23315001 RAL-361 3510 chr3R 23323982 23324051 chr3R 23324118 23324187 20 136 23.5 9.5 16.5 1.1 205 chr3R 23323982 intron pnt - chr3R 23324084 intron pnt - chr3R 23324187 intron pnt - chr3R_20_23320001 chr3R_23320001 RAL-361 3511 chr3R 23356958 23356976 chr3R 23357094 23357112 9 136 18.0 10.5 14.2 0.6 154 chr3R 23356958 intron Sec13 + chr3R 23357035 intron Sec13 + chr3R 23357112 intron Sec13 + chr3R_9_23355001 chr3R_23355001 RAL-361 3512 chr3R 23358390 23358448 chr3R 23358528 23358586 10 138 16.0 19.5 17.8 0.5 196 chr3R 23358390 3` UTR Sec13 + chr3R 23358488 3` UTR Sec13 + chr3R 23358586 intergenic Sec13 +,RpS3 + chr3R_10_23355001 chr3R_23355001 RAL-361 3513 chr3R 23385555 23385616 chr3R 23385727 23385789 12 172 9.5 10.5 10.0 1.1 234 chr3R 23385555 intergenic not near genes chr3R 23385672 intergenic not near genes chr3R 23385789 intergenic not near genes chr3R_12_23385001 chr3R_23385001 RAL-361 3514 chr3R 23390922 23390956 chr3R 23391054 23391085 4 130 8.0 5.5 6.8 0.5 163 chr3R 23390922 intergenic CR43387 + chr3R 23391004 intergenic CR43387 + chr3R 23391085 intergenic not near genes chr3R_4_23390001 chr3R_23390001 RAL-361 3515 chr3R 23476056 23476122 chr3R 23476184 23476250 13 126 24.5 27.0 25.8 0.5 194 chr3R 23476056 intergenic not near genes chr3R 23476153 intergenic not near genes chr3R 23476250 intergenic not near genes chr3R_13_23475001 chr3R_23475001 RAL-361 3516 chr3R 23512313 23512379 chr3R 23512506 23512576 7 194 17.0 4.5 10.8 0.6 263 chr3R 23512313 intergenic not near genes chr3R 23512444 intergenic not near genes chr3R 23512576 intergenic not near genes chr3R_7_23510001 chr3R_23510001 RAL-361 3517 chr3R 23536907 23536935 chr3R 23537139 23537167 10 232 28.0 19.5 23.8 0.4 260 chr3R 23536907 intergenic CG10168 -,CG16732 - chr3R 23537037 3` UTR CG10168 - chr3R 23537167 exon CG10168 - chr3R_10_23535001 chr3R_23535001 RAL-361 3518 chr3R 23536940 23536971 chr3R 23537133 23537203 6 223 21.5 19.0 20.2 0.3 263 chr3R 23536940 intergenic CG10168 -,CG16732 - chr3R 23537072 exon CG10168 - chr3R 23537203 exon CG10168 - chr3R_6_23535001 chr3R_23535001 RAL-361 3519 chr3R 23543272 23543337 chr3R 23543399 23543471 9 130 21.0 19.0 20.0 0.4 199 chr3R 23543272 intergenic not near genes chr3R 23543372 intergenic not near genes chr3R 23543471 intergenic not near genes chr3R_9_23540001 chr3R_23540001 RAL-361 3520 chr3R 23548039 23548050 chr3R 23548394 23548405 5 355 20.0 21.0 20.5 0.2 366 chr3R 23548039 intergenic not near genes chr3R 23548222 intergenic not near genes chr3R 23548405 intergenic not near genes chr3R_5_23545001 chr3R_23545001 RAL-361 3521 chr3R 23548055 23548101 chr3R 23548388 23548454 11 350 16.5 19.0 17.8 0.6 399 chr3R 23548055 intergenic not near genes chr3R 23548254 intergenic not near genes chr3R 23548454 intergenic not near genes chr3R_11_23545001 chr3R_23545001 RAL-361 3522 chr3R 23549112 23549162 chr3R 23549258 23549307 6 141 26.0 25.5 25.8 0.2 195 chr3R 23549112 intergenic not near genes chr3R 23549210 intergenic not near genes chr3R 23549307 intergenic not near genes chr3R_6_23545001 chr3R_23545001 RAL-361 3523 chr3R 23558349 23558423 chr3R 23560180 23560254 Bari1 28 1829 8.0 9.0 8.5 2.9 1905 chr3R 23558349 intron beat-IV + chr3R 23559302 intron beat-IV + chr3R 23560254 intron beat-IV + chr3R_28_23555001 chr3R_23555001 RAL-361 3524 chr3R 23572706 23572781 chr3R 23572876 23572946 25 162 13.0 13.0 13.0 1.8 240 chr3R 23572706 intron beat-IV + chr3R 23572826 intron beat-IV + chr3R 23572946 intron beat-IV + chr3R_25_23570001 chr3R_23570001 RAL-361 3525 chr3R 23626278 23626347 chr3R 23626427 23626496 16 146 22.0 16.0 19.0 0.8 218 chr3R 23626278 intron CG31145 - chr3R 23626387 intron CG31145 - chr3R 23626496 intron CG31145 - chr3R_16_23625001 chr3R_23625001 RAL-361 3526 chr3R 23627564 23627612 chr3R 23627708 23627756 5 144 29.5 34.0 31.8 0.2 192 chr3R 23627564 intron CG31145 - chr3R 23627660 intron CG31145 - chr3R 23627756 intron CG31145 - chr3R_5_23625001 chr3R_23625001 RAL-361 3527 chr3R 23629784 23629846 chr3R 23629913 23629975 11 123 27.5 27.0 27.2 0.4 191 chr3R 23629784 intron CG31145 - chr3R 23629880 intron CG31145 - chr3R 23629975 intron CG31145 - chr3R_11_23625001 chr3R_23625001 RAL-361 3528 chr3R 23643927 23643982 chr3R 23644054 23644109 8 127 26.0 29.0 27.5 0.3 182 chr3R 23643927 intron CG31145 - chr3R 23644018 intron CG31145 - chr3R 23644109 intron CG31145 - chr3R_8_23640001 chr3R_23640001 RAL-361 3529 chr3R 23667418 23667485 chr3R 23667565 23667632 12 146 19.5 21.0 20.2 0.6 214 chr3R 23667418 intron CG31145 - chr3R 23667525 intron CG31145 - chr3R 23667632 intron CG31145 - chr3R_12_23665001 chr3R_23665001 RAL-361 3530 chr3R 23668889 23668960 chr3R 23669017 23669088 13 128 30.0 25.0 27.5 0.5 199 chr3R 23668889 intron CG31145 - chr3R 23668988 intron CG31145 - chr3R 23669088 intron CG31145 - chr3R_13_23665001 chr3R_23665001 RAL-361 3531 chr3R 23670816 23670877 chr3R 23670951 23671012 15 134 30.0 27.0 28.5 0.5 196 chr3R 23670816 intergenic not near genes chr3R 23670914 intergenic not near genes chr3R 23671012 intergenic not near genes chr3R_15_23670001 chr3R_23670001 RAL-361 3532 chr3R 23684662 23684721 chr3R 23685192 23685257 roo 10 533 25.5 24.0 24.8 0.4 595 chr3R 23684662 exon CG18754 + chr3R 23684960 intron CG18754 + chr3R 23685257 exon CG18754 + chr3R_10_23680001 chr3R_23680001 RAL-361 3533 chr3R 23737345 23737403 chr3R 23737657 23737714 13 309 16.0 7.5 11.8 1.0 369 chr3R 23737345 intron Hmgcr + chr3R 23737530 intron Hmgcr + chr3R 23737714 intron Hmgcr + chr3R_13_23735001 chr3R_23735001 RAL-361 3534 chr3R 23823302 23823374 chr3R 23823457 23823529 17 153 17.0 12.5 14.8 1.1 227 chr3R 23823302 intron CG34355 + chr3R 23823416 intron CG34355 + chr3R 23823529 intron CG34355 + chr3R_17_23820001 chr3R_23820001 RAL-361 3535 chr3R 23835356 23835430 chr3R 23844558 23844628 roo 26 9199 12.0 3.0 7.5 3.1 9272 chr3R 23835356 intron CG34355 + chr3R 23839992 intron CG34355 + chr3R 23844628 intron CG34355 + chr3R_26_23835001 chr3R_23835001 RAL-361 3536 chr3R 23851037 23851079 chr3R 23858754 23858796 opus 17 7717 7.5 15.0 11.2 1.4 7759 chr3R 23851037 3` UTR CG34355 + chr3R 23854916 intergenic not near genes chr3R 23858796 intergenic not near genes chr3R_17_23850001 chr3R_23850001 RAL-361 3537 chr3R 23865764 23865822 chr3R 23866481 23866539 8 708 17.0 26.0 21.5 0.4 775 chr3R 23865764 intron Pli - chr3R 23866152 intron Pli - chr3R 23866539 intron Pli - chr3R_8_23865001 chr3R_23865001 RAL-361 3538 chr3R 23873937 23873950 chr3R 23874067 23874083 5 130 23.5 24.5 24.0 0.2 146 chr3R 23873937 intron Pli - chr3R 23874010 intron Pli - chr3R 23874083 intron Pli - chr3R_5_23870001 chr3R_23870001 RAL-361 3539 chr3R 23883064 23883126 chr3R 23883476 23883538 22 393 18.5 21.5 20.0 1.0 474 chr3R 23883064 intron Pli - chr3R 23883301 intron Pli - chr3R 23883538 intron Pli - chr3R_22_23880001 chr3R_23880001 RAL-361 3540 chr3R 23942182 23942254 chr3R 23942325 23942397 15 142 19.0 24.0 21.5 0.7 215 chr3R 23942182 intron Gdh - chr3R 23942290 intron Gdh - chr3R 23942397 intron Gdh - chr3R_15_23940001 chr3R_23940001 RAL-361 3541 chr3R 23944868 23944933 chr3R 23945003 23945068 18 133 19.5 18.5 19.0 0.9 200 chr3R 23944868 intron CG12268 - chr3R 23944968 intron CG12268 - chr3R 23945068 exon CG12268 - chr3R_18_23940001 chr3R_23940001 RAL-361 3542 chr3R 23949004 23949075 chr3R 23949122 23949202 20 126 14.0 13.5 13.8 1.4 198 chr3R 23949004 intergenic not near genes chr3R 23949103 intergenic not near genes chr3R 23949202 intergenic not near genes chr3R_20_23945001 chr3R_23945001 RAL-361 3543 chr3R 23962455 23962482 chr3R 23962580 23962641 6 153 24.5 31.0 27.8 0.2 186 chr3R 23962455 3` UTR AP-1sigma + chr3R 23962548 3` UTR AP-1sigma + chr3R 23962641 intergenic AP-1sigma + chr3R_6_23960001 chr3R_23960001 RAL-361 3544 chr3R 24011618 24011667 chr3R 24011751 24011800 13 133 40.5 42.0 41.2 0.3 182 chr3R 24011618 intron KrT95D - chr3R 24011709 intron KrT95D - chr3R 24011800 intron KrT95D - chr3R_13_24010001 chr3R_24010001 RAL-361 3545 chr3R 24021577 24021646 chr3R 24021717 24021786 21 140 25.0 19.0 22.0 0.9 209 chr3R 24021577 intron KrT95D - chr3R 24021682 intron KrT95D - chr3R 24021786 intron KrT95D - chr3R_21_24020001 chr3R_24020001 RAL-361 3546 chr3R 24025530 24025562 chr3R 24025659 24025691 4 124 16.5 18.5 17.5 0.2 161 chr3R 24025530 intron KrT95D - chr3R 24025610 intron KrT95D - chr3R 24025691 intron KrT95D - chr3R_4_24025001 chr3R_24025001 RAL-361 3547 chr3R 24025566 24025598 chr3R 24025656 24025717 9 109 15.0 17.5 16.2 0.5 151 chr3R 24025566 intron KrT95D - chr3R 24025642 intron KrT95D - chr3R 24025717 intron KrT95D - chr3R_9_24025001 chr3R_24025001 RAL-361 3548 chr3R 24053666 24053715 chr3R 24053907 24053972 6 253 16.0 20.0 18.0 0.3 306 chr3R 24053666 intergenic CG5991 + chr3R 24053819 intergenic CG5991 + chr3R 24053972 intergenic CG5991 +,CG6000 +,CR44097 + chr3R_6_24050001 chr3R_24050001 RAL-361 3549 chr3R 24072040 24072108 chr3R 24072528 24072596 jockey 38 484 16.0 14.0 15.0 2.4 556 chr3R 24072040 intron 4EHP - chr3R 24072318 intron 4EHP - chr3R 24072596 intron 4EHP - chr3R_38_24070001 chr3R_24070001 RAL-361 3550 chr3R 24074522 24074588 chr3R 24074648 24074714 8 126 21.5 20.0 20.8 0.4 192 chr3R 24074522 intron 4EHP - chr3R 24074618 intron 4EHP - chr3R 24074714 intron 4EHP - chr3R_8_24070001 chr3R_24070001 RAL-361 3551 chr3R 24075319 24075386 chr3R 24075467 24075531 10 146 12.5 10.0 11.2 0.8 212 chr3R 24075319 intron 4EHP - chr3R 24075425 intron 4EHP - chr3R 24075531 intron 4EHP - chr3R_10_24075001 chr3R_24075001 RAL-361 3552 chr3R 24076887 24076940 chr3R 24078398 24078457 hobo 28 1511 6.0 13.0 9.5 2.7 1570 chr3R 24076887 intron 4EHP - chr3R 24077672 intron 4EHP - chr3R 24078457 intron 4EHP - chr3R_28_24075001 chr3R_24075001 RAL-361 3553 chr3R 24100409 24100480 chr3R 24100554 24100625 18 144 28.5 24.5 26.5 0.7 216 chr3R 24100409 intron 4EHP - chr3R 24100517 intron 4EHP - chr3R 24100625 intron 4EHP - chr3R_18_24100001 chr3R_24100001 RAL-361 3554 chr3R 24100839 24100867 chr3R 24101030 24101058 9 191 15.0 18.0 16.5 0.5 219 chr3R 24100839 intron 4EHP - chr3R 24100948 intron 4EHP - chr3R 24101058 intron 4EHP - chr3R_9_24100001 chr3R_24100001 RAL-361 3555 chr3R 24171208 24171229 chr3R 24171356 24171377 6 148 38.0 28.0 33.0 0.2 169 chr3R 24171208 intergenic not near genes chr3R 24171292 intergenic not near genes chr3R 24171377 intergenic not near genes chr3R_6_24170001 chr3R_24170001 RAL-361 3556 chr3R 24173510 24173582 chr3R 24173642 24173714 15 132 17.0 20.0 18.5 0.8 204 chr3R 24173510 intron CG13606 + chr3R 24173612 intron CG13606 + chr3R 24173714 intron CG13606 + chr3R_15_24170001 chr3R_24170001 RAL-361 3557 chr3R 24199697 24199768 chr3R 24199827 24199851 19 126 15.0 12.5 13.8 1.3 154 chr3R 24199697 intron twin - chr3R 24199774 intron twin - chr3R 24199851 intron twin - chr3R_19_24195001 chr3R_24195001 RAL-361 3558 chr3R 24200322 24200334 chr3R 24200448 24200460 4 126 12.0 2.0 7.0 0.5 138 chr3R 24200322 intron twin - chr3R 24200391 intron twin - chr3R 24200460 intron twin - chr3R_4_24200001 chr3R_24200001 RAL-361 3559 chr3R 24201935 24201977 chr3R 24202059 24202116 7 136 35.5 33.0 34.2 0.2 181 chr3R 24201935 intron twin - chr3R 24202026 intron twin - chr3R 24202116 intron twin - chr3R_7_24200001 chr3R_24200001 RAL-361 3560 chr3R 24207173 24207242 chr3R 24212299 24212369 flea 14 5124 4.0 16.5 10.2 1.2 5196 chr3R 24207173 intron twin - chr3R 24209771 intron twin - chr3R 24212369 intron twin - chr3R_14_24205001 chr3R_24205001 RAL-361 3561 chr3R 24214006 24214064 chr3R 24214141 24214199 12 132 25.0 28.5 26.8 0.4 193 chr3R 24214006 intron twin - chr3R 24214102 intron twin - chr3R 24214199 intron twin - chr3R_12_24210001 chr3R_24210001 RAL-361 3562 chr3R 24261115 24261180 chr3R 24261252 24261312 10 136 31.0 30.0 30.5 0.3 197 chr3R 24261115 intron jar - chr3R 24261214 intron jar - chr3R 24261312 intron jar - chr3R_10_24260001 chr3R_24260001 RAL-361 3563 chr3R 24359591 24359625 chr3R 24359729 24359763 9 138 27.0 28.5 27.8 0.3 172 chr3R 24359591 intron CG18528 - chr3R 24359677 intron CG18528 - chr3R 24359763 intron CG18528 - chr3R_9_24355001 chr3R_24355001 RAL-361 3564 chr3R 24377739 24377812 chr3R 24377911 24377989 4 175 10.0 0.0 5.0 0.7 250 chr3R 24377739 intergenic CG33342 + chr3R 24377864 intergenic CG33342 + chr3R 24377989 intergenic CG33342 + chr3R_4_24375001 chr3R_24375001 RAL-361 3565 chr3R 21907534 21907535 chr3R 24389465 24389465 13 2481930 35.5 30.0 32.8 0.4 2481931 chr3R 21907534 intergenic CG6678 + chr3R 23148500 intergenic not near genes chr3R 24389465 intron CG5768 - chr3R_13_23145001 chr3R_23145001 RAL-361 3566 chr3R 24391871 24391930 chr3R 24392037 24392096 10 166 23.5 20.5 22.0 0.4 225 chr3R 24391871 intergenic CG13615 + chr3R 24391984 intergenic CG13615 + chr3R 24392096 intergenic CG13615 + chr3R_10_24390001 chr3R_24390001 RAL-361 3567 chr3R 24431554 24431620 chr3R 24431683 24431749 11 129 23.5 16.5 20.0 0.5 195 chr3R 24431554 intron nAChRalpha1 - chr3R 24431652 intron nAChRalpha1 - chr3R 24431749 intron nAChRalpha1 - chr3R_11_24430001 chr3R_24430001 RAL-361 3568 chr3R 24434193 24434270 chr3R 24434321 24434342 33 124 12.0 10.5 11.2 2.7 149 chr3R 24434193 intron nAChRalpha1 - chr3R 24434268 intron nAChRalpha1 - chr3R 24434342 intron nAChRalpha1 - chr3R_33_24430001 chr3R_24430001 RAL-361 3569 chr3R 24473536 24473597 chr3R 24473705 24473766 14 168 20.5 24.5 22.5 0.6 230 chr3R 24473536 intergenic not near genes chr3R 24473651 intergenic not near genes chr3R 24473766 intergenic not near genes chr3R_14_24470001 chr3R_24470001 RAL-361 3570 chr3R 24477574 24477598 chr3R 24477689 24477725 6 124 32.5 35.0 33.8 0.2 151 chr3R 24477574 intergenic not near genes chr3R 24477650 intergenic not near genes chr3R 24477725 intergenic not near genes chr3R_6_24475001 chr3R_24475001 RAL-361 3571 chr3R 24482882 24482927 chr3R 24483014 24483064 14 134 11.5 13.0 12.2 1.1 182 chr3R 24482882 intergenic not near genes chr3R 24482973 intergenic not near genes chr3R 24483064 intergenic not near genes chr3R_14_24480001 chr3R_24480001 RAL-361 3572 chr3R 24493234 24493301 chr3R 24493513 24493580 BS 36 278 12.5 12.0 12.2 2.7 346 chr3R 24493234 intergenic not near genes chr3R 24493407 intergenic not near genes chr3R 24493580 intergenic not near genes chr3R_36_24490001 chr3R_24490001 RAL-361 3573 chr3R 24510550 24510588 chr3R 24510680 24510718 8 130 32.0 37.5 34.8 0.2 168 chr3R 24510550 intron nAChRbeta2 - chr3R 24510634 intron nAChRbeta2 - chr3R 24510718 intron nAChRbeta2 - chr3R_8_24510001 chr3R_24510001 RAL-361 3574 chr3R 24523852 24523893 chr3R 24523988 24524029 4 136 17.0 18.5 17.8 0.2 177 chr3R 24523852 intergenic CG13622 - chr3R 24523940 intergenic CG13622 - chr3R 24524029 intergenic CG13622 - chr3R_4_24520001 chr3R_24520001 RAL-361 3575 chr3R 24527764 24527775 chr3R 24527905 24527916 5 141 32.0 21.0 26.5 0.2 152 chr3R 24527764 intergenic CG13618 +,CG6607 + chr3R 24527840 intergenic CG6607 +,CG13618 + chr3R 24527916 intergenic CG6607 +,CG13618 + chr3R_5_24525001 chr3R_24525001 RAL-361 3576 chr3R 24527782 24527819 chr3R 24527897 24527960 10 138 29.0 20.5 24.8 0.4 178 chr3R 24527782 intergenic CG13618 +,CG6607 + chr3R 24527871 intergenic CG6607 +,CG13618 + chr3R 24527960 intergenic CG6607 +,CG13618 + chr3R_10_24525001 chr3R_24525001 RAL-361 3577 chr3R 24547672 24547734 chr3R 24547839 24547901 12 167 20.0 21.0 20.5 0.6 229 chr3R 24547672 intron Esyt2 + chr3R 24547786 intron Esyt2 + chr3R 24547901 intron Esyt2 + chr3R_12_24545001 chr3R_24545001 RAL-361 3578 chr3R 24563464 24563527 chr3R 24563595 24563657 15 131 17.0 17.5 17.2 0.8 193 chr3R 24563464 intron CG13624 - chr3R 24563560 intron CG13624 - chr3R 24563657 intron CG13624 - chr3R_15_24560001 chr3R_24560001 RAL-361 3579 chr3R 24573676 24573698 chr3R 24573807 24573829 4 131 34.5 25.0 29.8 0.1 153 chr3R 24573676 intron CG13624 - chr3R 24573752 intron CG13624 - chr3R 24573829 intron CG13624 - chr3R_4_24570001 chr3R_24570001 RAL-361 3580 chr3R 24581457 24581518 chr3R 24581588 24581649 21 131 35.5 33.5 34.5 0.6 192 chr3R 24581457 intron CG13624 - chr3R 24581553 intron CG13624 - chr3R 24581649 intron CG13624 - chr3R_21_24580001 chr3R_24580001 RAL-361 3581 chr3R 24594628 24594633 chr3R 24594918 24594923 pogo 6 290 19.5 22.5 21.0 0.3 295 chr3R 24594628 intron mld + chr3R 24594776 intron mld + chr3R 24594923 intron mld + chr3R_6_24590001 chr3R_24590001 RAL-361 3582 chr3R 24594637 24594664 chr3R 24594925 24594954 pogo 14 288 11.5 24.5 18.0 0.7 317 chr3R 24594637 intron mld + chr3R 24594796 intron mld + chr3R 24594954 intron mld + chr3R_14_24590001 chr3R_24590001 RAL-361 3583 chr3R 24605519 24605555 chr3R 24605656 24605693 19 136 14.0 18.5 16.2 1.1 174 chr3R 24605519 intron mld + chr3R 24605606 intron mld + chr3R 24605693 intron mld + chr3R_19_24605001 chr3R_24605001 RAL-361 3584 chr3R 24624329 24624395 chr3R 24624467 24624534 7 139 35.5 30.0 32.8 0.2 205 chr3R 24624329 intron Syx18 - chr3R 24624432 intron Syx18 - chr3R 24624534 exon Syx18 - chr3R_7_24620001 chr3R_24620001 RAL-361 3585 chr3R 24667554 24667595 chr3R 24667682 24667722 20 127 13.0 0.0 6.5 2.7 168 chr3R 24667554 intron slo + chr3R 24667638 intron slo + chr3R 24667722 intron slo + chr3R_20_24665001 chr3R_24665001 RAL-361 3586 chr3R 24670013 24670191 chr3R 24670246 24670326 13 215 14.5 17.0 15.8 0.8 313 chr3R 24670013 intron slo + chr3R 24670170 intron slo + chr3R 24670326 intron slo + chr3R_13_24670001 chr3R_24670001 RAL-361 3587 chr3R 24730051 24730120 chr3R 24732479 24732555 Doc 16 2427 11.0 3.5 7.2 2.0 2504 chr3R 24730051 intron tok + chr3R 24731303 intron tok + chr3R 24732555 intron tok + chr3R_16_24730001 chr3R_24730001 RAL-361 3588 chr3R 24787498 24787556 chr3R 24787624 24787682 19 126 5.5 1.5 3.5 4.2 184 chr3R 24787498 intergenic CG5805 - chr3R 24787590 intergenic CG5805 -,Ets96B + chr3R 24787682 intergenic CG5805 -,Ets96B + chr3R_19_24785001 chr3R_24785001 RAL-361 3589 chr3R 24789941 24790011 chr3R 24790136 24790178 23 193 16.5 17.0 16.8 1.3 237 chr3R 24789941 intron,5` UTR Ets96B +,CG13634 - chr3R 24790060 intron,5` UTR Ets96B +,CG13634 - chr3R 24790178 intron Ets96B + chr3R_23_24790001 chr3R_24790001 RAL-361 3590 chr3R 24825568 24825615 chr3R 24825711 24825746 5 138 21.5 14.0 17.8 0.3 178 chr3R 24825568 5` UTR niki - chr3R 24825657 intergenic niki -,CG43166 - chr3R 24825746 intergenic CG43166 -,niki - chr3R_5_24825001 chr3R_24825001 RAL-361 3591 chr3R 24854837 24854908 chr3R 24854969 24855040 17 132 17.0 20.5 18.8 0.9 203 chr3R 24854837 3` UTR,3` UTR nct +,HdacX - chr3R 24854938 3` UTR HdacX - chr3R 24855040 3` UTR HdacX - chr3R_17_24850001 chr3R_24850001 RAL-361 3592 chr3R 24927094 24927150 chr3R 24931935 24931991 Doc 24 4840 5.5 9.5 7.5 2.8 4897 chr3R 24927094 intergenic Trf4-2 + chr3R 24929542 intergenic not near genes chr3R 24931991 intergenic CG11771 + chr3R_24_24925001 chr3R_24925001 RAL-361 3593 chr3R 24949960 24949985 chr3R 24950093 24950118 6 133 27.5 32.5 30.0 0.2 158 chr3R 24949960 intergenic CG13646 + chr3R 24950039 intergenic CG13646 + chr3R 24950118 intergenic not near genes chr3R_6_24950001 chr3R_24950001 RAL-361 3594 chr3R 24974862 24974932 chr3R 24974991 24975061 7 129 7.0 9.5 8.2 0.8 199 chr3R 24974862 intergenic not near genes chr3R 24974962 intergenic not near genes chr3R 24975061 intergenic not near genes chr3R_7_24970001 chr3R_24970001 RAL-361 3595 chr3R 25004851 25004919 chr3R 25004984 25005016 7 128 6.5 12.0 9.2 0.7 165 chr3R 25004851 intron tnc + chr3R 25004934 intron tnc + chr3R 25005016 intron tnc + chr3R_7_25000001 chr3R_25000001 RAL-361 3596 chr3R 25008203 25008222 chr3R 25008329 25008342 6 126 27.5 26.5 27.0 0.2 139 chr3R 25008203 intron tnc + chr3R 25008272 intron tnc + chr3R 25008342 intron tnc + chr3R_6_25005001 chr3R_25005001 RAL-361 3597 chr3R 25064476 25064563 chr3R 25064637 25064711 12 149 19.0 22.0 20.5 0.6 235 chr3R 25064476 3` UTR veli - chr3R 25064594 3` UTR veli - chr3R 25064711 exon veli - chr3R_12_25060001 chr3R_25060001 RAL-361 3598 chr3R 25075093 25075154 chr3R 25075301 25075362 16 208 18.0 21.0 19.5 0.8 269 chr3R 25075093 exon CG11920 + chr3R 25075228 intron CG11920 + chr3R 25075362 intron CG11920 + chr3R_16_25075001 chr3R_25075001 RAL-361 3599 chr3R 25086014 25086041 chr3R 25086140 25086167 11 126 19.5 6.5 13.0 0.8 153 chr3R 25086014 intergenic not near genes chr3R 25086090 intergenic not near genes chr3R 25086167 intergenic not near genes chr3R_11_25085001 chr3R_25085001 RAL-361 3600 chr3R 25097076 25097090 chr3R 25097253 25097267 7 177 0.0 12.5 6.2 1.0 191 chr3R 25097076 intergenic not near genes chr3R 25097172 intergenic CG33095 +,CG33096 + chr3R 25097267 intergenic CG33095 +,CG33096 + chr3R_7_25095001 chr3R_25095001 RAL-361 3601 chr3R 25136357 25136412 chr3R 25136487 25136542 11 130 17.5 18.0 17.8 0.6 185 chr3R 25136357 3` UTR Bili + chr3R 25136450 3` UTR Bili + chr3R 25136542 3` UTR Bili + chr3R_11_25135001 chr3R_25135001 RAL-361 3602 chr3R 25166315 25166389 chr3R 25166441 25166515 16 125 31.5 29.5 30.5 0.5 200 chr3R 25166315 intergenic not near genes chr3R 25166415 intergenic not near genes chr3R 25166515 intergenic not near genes chr3R_16_25165001 chr3R_25165001 RAL-361 3603 chr3R 25188172 25188242 chr3R 25188299 25188324 25 125 26.0 21.0 23.5 1.0 152 chr3R 25188172 intron,intron lobo -,dan + chr3R 25188248 intron,intron lobo -,dan + chr3R 25188324 intron,intron lobo -,dan + chr3R_25_25185001 chr3R_25185001 RAL-361 3604 chr3R 25192763 25192810 chr3R 25192940 25192992 12 180 7.0 18.5 12.8 0.9 229 chr3R 25192763 intron,3` UTR lobo -,dan + chr3R 25192878 intron lobo - chr3R 25192992 intron lobo - chr3R_12_25190001 chr3R_25190001 RAL-361 3605 chr3R 25207599 25207618 chr3R 25207742 25207761 7 143 16.5 11.5 14.0 0.5 162 chr3R 25207599 intron,intron Cad96Ca -,CG13654 + chr3R 25207680 intron,intron Cad96Ca -,CG13654 + chr3R 25207761 intron,intron Cad96Ca -,CG13654 + chr3R_7_25205001 chr3R_25205001 RAL-361 3606 chr3R 25268076 25268115 chr3R 25272649 25272654 5 4546 36.5 32.0 34.2 0.1 4578 chr3R 25268076 intron CR45214 - chr3R 25270365 exon,5` UTR CG11889 +,CG11891 + chr3R 25272654 3` UTR,exon CG11889 +,CG11891 + chr3R_5_25270001 chr3R_25270001 RAL-361 3607 chr3R 25300745 25300799 chr3R 25305561 25305615 4 4816 36.5 53.0 44.8 0.1 4870 chr3R 25300745 intergenic CG13659 + chr3R 25303180 exon CG31370 + chr3R 25305615 3` UTR CG31436 + chr3R_4_25300001 chr3R_25300001 RAL-361 3608 chr3R 25303145 25303220 chr3R 25303276 25303332 23 129 10.5 9.0 9.8 2.1 187 chr3R 25303145 exon CG31370 + chr3R 25303238 exon CG31370 + chr3R 25303332 exon CG31370 + chr3R_23_25300001 chr3R_25300001 RAL-361 3609 chr3R 25303791 25303860 chr3R 25305610 25305678 10 1820 35.0 59.0 47.0 0.2 1887 chr3R 25303791 exon CG31370 + chr3R 25304734 exon CG31436 + chr3R 25305678 intergenic CG31436 + chr3R_10_25300001 chr3R_25300001 RAL-361 3610 chr3R 25300111 25300155 chr3R 25305906 25305950 5 5795 36.5 38.0 37.2 0.1 5839 chr3R 25300111 intergenic not near genes chr3R 25303030 exon CG31370 + chr3R 25305950 intergenic CG31436 +,CG10550 - chr3R_5_25300001 chr3R_25300001 RAL-361 3611 chr3R 25324341 25324388 chr3R 25328956 25329002 Doc 11 4615 6.0 31.0 18.5 0.6 4661 chr3R 25324341 exon CHKov1 - chr3R 25326672 intron CHKov1 - chr3R 25329002 exon CHKov1 - chr3R_11_25325001 chr3R_25325001 RAL-361 3612 chr3R 25368428 25368502 chr3R 25368596 25368674 24 167 5.5 2.5 4.0 4.8 246 chr3R 25368428 intron Fur1 - chr3R 25368551 intron Fur1 - chr3R 25368674 intron Fur1 - chr3R_24_25365001 chr3R_25365001 RAL-361 3613 chr3R 25377355 25377429 chr3R 25377493 25377567 20 138 6.5 6.0 6.2 2.8 212 chr3R 25377355 intron Fur1 - chr3R 25377461 intron Fur1 - chr3R 25377567 intron Fur1 - chr3R_20_25375001 chr3R_25375001 RAL-361 3614 chr3R 25431393 25431433 chr3R 25431529 25431578 7 140 21.0 24.0 22.5 0.3 185 chr3R 25431393 intron Fur1 - chr3R 25431486 intron Fur1 - chr3R 25431578 intron Fur1 - chr3R_7_25430001 chr3R_25430001 RAL-361 3615 chr3R 25465008 25465088 chr3R 25465135 25465215 7 127 14.5 14.5 14.5 0.5 207 chr3R 25465008 intron Fur1 - chr3R 25465112 intron Fur1 - chr3R 25465215 intron Fur1 - chr3R_7_25465001 chr3R_25465001 RAL-361 3616 chr3R 25512342 25512407 chr3R 25512471 25512536 15 129 9.0 15.5 12.2 1.1 194 chr3R 25512342 intergenic not near genes chr3R 25512439 intergenic not near genes chr3R 25512536 intergenic not near genes chr3R_15_25510001 chr3R_25510001 RAL-361 3617 chr3R 25513025 25513031 chr3R 25513158 25513164 4 133 6.0 31.5 18.8 0.2 139 chr3R 25513025 intergenic not near genes chr3R 25513094 intergenic not near genes chr3R 25513164 intergenic not near genes chr3R_4_25510001 chr3R_25510001 RAL-361 3618 chr3R 25517978 25518050 chr3R 25518118 25518190 11 140 24.0 25.0 24.5 0.4 212 chr3R 25517978 intron msi + chr3R 25518084 intron msi + chr3R 25518190 intron msi + chr3R_11_25515001 chr3R_25515001 RAL-361 3619 chr3R 25520946 25520984 chr3R 25521095 25521133 18 149 15.0 2.5 8.8 1.8 187 chr3R 25520946 intron msi + chr3R 25521040 intron msi + chr3R 25521133 intron msi + chr3R_18_25520001 chr3R_25520001 RAL-361 3620 chr3R 25526072 25526150 chr3R 25526243 25526321 9 171 16.0 13.5 14.8 0.6 249 chr3R 25526072 intron msi + chr3R 25526196 intron msi + chr3R 25526321 intron msi + chr3R_9_25525001 chr3R_25525001 RAL-361 3621 chr3R 25551759 25551811 chr3R 25551886 25551926 15 126 23.0 19.5 21.2 0.7 167 chr3R 25551759 intron msi + chr3R 25551842 intron msi + chr3R 25551926 intron msi + chr3R_15_25550001 chr3R_25550001 RAL-361 3622 chr3R 25555486 25555560 chr3R 25555615 25555689 12 127 15.0 24.5 19.8 0.6 203 chr3R 25555486 intron msi + chr3R 25555588 intron msi + chr3R 25555689 intron msi + chr3R_12_25555001 chr3R_25555001 RAL-361 3623 chr3R 25561361 25561394 chr3R 25561506 25561539 11 143 21.0 18.0 19.5 0.5 178 chr3R 25561361 intron msi + chr3R 25561450 intron msi + chr3R 25561539 intron msi + chr3R_11_25560001 chr3R_25560001 RAL-361 3624 chr3R 25571842 25571873 chr3R 25571980 25572011 7 136 26.0 32.0 29.0 0.2 169 chr3R 25571842 intron msi + chr3R 25571926 intron msi + chr3R 25572011 intron msi + chr3R_7_25570001 chr3R_25570001 RAL-361 3625 chr3R 25576805 25576821 chr3R 25576937 25576970 4 140 26.5 20.5 23.5 0.2 165 chr3R 25576805 intron msi + chr3R 25576888 intron msi + chr3R 25576970 intron msi + chr3R_4_25575001 chr3R_25575001 RAL-361 3626 chr3R 25576841 25576849 chr3R 25576934 25576977 6 126 21.0 21.0 21.0 0.3 136 chr3R 25576841 intron msi + chr3R 25576909 intron msi + chr3R 25576977 intron msi + chr3R_6_25575001 chr3R_25575001 RAL-361 3627 chr3R 25583671 25583715 chr3R 25583804 25583856 7 140 23.0 23.5 23.2 0.3 185 chr3R 25583671 intron msi + chr3R 25583764 intron msi + chr3R 25583856 intron msi + chr3R_7_25580001 chr3R_25580001 RAL-361 3628 chr3R 25597170 25597222 chr3R 25597297 25597349 17 127 27.5 25.0 26.2 0.6 179 chr3R 25597170 intron,intron msi +,ymp - chr3R 25597260 intron,intron msi +,ymp - chr3R 25597349 intron,intron msi +,ymp - chr3R_17_25595001 chr3R_25595001 RAL-361 3629 chr3R 25612530 25612817 chr3R 25612678 25612971 19 143 17.0 27.5 22.2 0.8 441 chr3R 25612530 intron Npl4 - chr3R 25612750 intron Npl4 - chr3R 25612971 intron Npl4 - chr3R_19_25610001 chr3R_25610001 RAL-361 3630 chr3R 25612844 25612854 chr3R 25612997 25613011 7 156 12.5 31.5 22.0 0.3 167 chr3R 25612844 intron Npl4 - chr3R 25612928 intron Npl4 - chr3R 25613011 intron Npl4 - chr3R_7_25610001 chr3R_25610001 RAL-361 3631 chr3R 25652280 25652345 chr3R 25652407 25652457 30 126 20.0 28.5 24.2 1.2 177 chr3R 25652280 intergenic not near genes chr3R 25652368 intergenic not near genes chr3R 25652457 intergenic not near genes chr3R_30_25650001 chr3R_25650001 RAL-361 3632 chr3R 25671197 25671270 chr3R 25671345 25671420 15 147 3.0 5.5 4.2 2.9 223 chr3R 25671197 intron Lgr3 + chr3R 25671308 intron Lgr3 + chr3R 25671420 intron Lgr3 + chr3R_15_25670001 chr3R_25670001 RAL-361 3633 chr3R 25689086 25689159 chr3R 25689244 25689301 26 156 5.0 7.0 6.0 3.7 215 chr3R 25689086 intergenic not near genes chr3R 25689194 intergenic not near genes chr3R 25689301 intergenic not near genes chr3R_26_25685001 chr3R_25685001 RAL-361 3634 chr3R 25720767 25720827 chr3R 25720909 25720962 9 138 19.5 22.5 21.0 0.4 195 chr3R 25720767 intron LpR2 - chr3R 25720864 intron LpR2 - chr3R 25720962 intron LpR2 - chr3R_9_25720001 chr3R_25720001 RAL-361 3635 chr3R 25725789 25725822 chr3R 25734999 25735032 roo 14 9210 16.0 8.5 12.2 1.1 9243 chr3R 25725789 intron LpR2 - chr3R 25730410 intron LpR2 - chr3R 25735032 intron LpR2 - chr3R_14_25730001 chr3R_25730001 RAL-361 3636 chr3R 25725825 25725850 chr3R 25734998 25735060 roo 14 9207 10.0 8.5 9.2 1.4 9235 chr3R 25725825 intron LpR2 - chr3R 25730442 intron LpR2 - chr3R 25735060 intron LpR2 - chr3R_14_25730001 chr3R_25730001 RAL-361 3637 chr3R 25755151 25755219 chr3R 25756061 25756092 25 907 12.0 23.5 17.8 1.3 941 chr3R 25755151 intron LpR1 - chr3R 25755622 intron LpR1 - chr3R 25756092 intron LpR1 - chr3R_25_25755001 chr3R_25755001 RAL-361 3638 chr3R 25832654 25832717 chr3R 25841886 25841947 roo 25 9230 5.5 13.0 9.2 2.5 9293 chr3R 25832654 exon alpha4GT2 + chr3R 25837300 intron alpha4GT2 + chr3R 25841947 exon alpha4GT2 + chr3R_25_25835001 chr3R_25835001 RAL-361 3639 chr3R 25843595 25843659 chr3R 25843775 25843839 10 180 32.5 26.5 29.5 0.3 244 chr3R 25843595 intergenic CR45653 + chr3R 25843717 intergenic CR45653 + chr3R 25843839 intergenic CR45653 + chr3R_10_25840001 chr3R_25840001 RAL-361 3640 chr3R 25846491 25846562 chr3R 25846620 25846691 12 127 8.5 10.0 9.2 1.2 200 chr3R 25846491 intergenic CR45654 +,CR45655 + chr3R 25846591 intergenic CR45655 +,CR45654 + chr3R 25846691 intergenic CR45655 +,CR45654 + chr3R_12_25845001 chr3R_25845001 RAL-361 3641 chr3R 25860103 25860178 chr3R 25860276 25860351 9 173 18.0 24.0 21.0 0.4 248 chr3R 25860103 intron CG5890 + chr3R 25860227 intron CG5890 + chr3R 25860351 intron CG5890 + chr3R_9_25860001 chr3R_25860001 RAL-361 3642 chr3R 25884712 25884785 chr3R 25885112 25885165 24 398 15.0 16.0 15.5 1.5 453 chr3R 25884712 intron SppL + chr3R 25884938 intron SppL + chr3R 25885165 5` UTR SppL + chr3R_24_25880001 chr3R_25880001 RAL-361 3643 chr3R 25927463 25927534 chr3R 25927595 25927666 12 132 23.5 24.0 23.8 0.5 203 chr3R 25927463 intron CCAP-R - chr3R 25927564 intron CCAP-R - chr3R 25927666 intron CCAP-R - chr3R_12_25925001 chr3R_25925001 RAL-361 3644 chr3R 25931486 25931538 chr3R 25931628 25931651 10 139 17.0 4.5 10.8 0.8 165 chr3R 25931486 intron,5` UTR CCAP-R -,CR34024 + chr3R 25931568 intron,5` UTR CCAP-R -,CR34024 + chr3R 25931651 intron,intron CCAP-R -,CR34024 + chr3R_10_25930001 chr3R_25930001 RAL-361 3645 chr3R 25997222 25997251 chr3R 25997359 25997388 7 137 31.5 26.5 29.0 0.2 166 chr3R 25997222 intergenic CG43116 -,E(spl)mdelta-HLH + chr3R 25997305 intergenic CG43116 -,E(spl)mdelta-HLH + chr3R 25997388 intergenic E(spl)mdelta-HLH +,CG43116 - chr3R_7_25995001 chr3R_25995001 RAL-361 3646 chr3R 26010125 26010202 chr3R 26010252 26010287 14 123 27.0 22.5 24.8 0.5 162 chr3R 26010125 intergenic not near genes chr3R 26010206 intergenic not near genes chr3R 26010287 intergenic not near genes chr3R_14_26010001 chr3R_26010001 RAL-361 3647 chr3R 26013805 26013859 chr3R 26013935 26013989 9 130 20.5 24.5 22.5 0.4 184 chr3R 26013805 intergenic not near genes chr3R 26013897 intergenic not near genes chr3R 26013989 intergenic not near genes chr3R_9_26010001 chr3R_26010001 RAL-361 3648 chr3R 26018652 26018670 chr3R 26018790 26018808 5 138 22.5 28.5 25.5 0.2 156 chr3R 26018652 3` UTR CR43643 - chr3R 26018730 3` UTR CR43643 - chr3R 26018808 3` UTR CR43643 - chr3R_5_26015001 chr3R_26015001 RAL-361 3649 chr3R 26038316 26038386 chr3R 26038452 26038521 8 136 28.0 28.5 28.2 0.3 205 chr3R 26038316 intergenic E(spl)m7-HLH + chr3R 26038418 intergenic E(spl)m7-HLH + chr3R 26038521 intergenic not near genes chr3R_8_26035001 chr3R_26035001 RAL-361 3650 chr3R 26038928 26038999 chr3R 26039114 26039186 13 186 29.0 31.5 30.2 0.4 258 chr3R 26038928 intergenic not near genes chr3R 26039057 intergenic not near genes chr3R 26039186 intergenic not near genes chr3R_13_26035001 chr3R_26035001 RAL-361 3651 chr3R 26066323 26066379 chr3R 26066449 26066514 9 134 29.0 22.0 25.5 0.3 191 chr3R 26066323 intergenic not near genes chr3R 26066418 intergenic not near genes chr3R 26066514 intergenic not near genes chr3R_9_26065001 chr3R_26065001 RAL-361 3652 chr3R 26093796 26093871 chr3R 26093924 26093999 33 126 7.0 6.0 6.5 4.4 203 chr3R 26093796 intron dys - chr3R 26093898 intron dys - chr3R 26093999 intron dys - chr3R_33_26090001 chr3R_26090001 RAL-361 3653 chr3R 26121898 26121972 chr3R 26122044 26122116 16 146 6.0 8.0 7.0 2.0 218 chr3R 26121898 intron CG31324 + chr3R 26122007 intron CG31324 + chr3R 26122116 intron CG31324 + chr3R_16_26120001 chr3R_26120001 RAL-361 3654 chr3R 26122411 26122479 chr3R 26122537 26122605 36 125 15.5 14.5 15.0 2.2 194 chr3R 26122411 intron CG31324 + chr3R 26122508 intron CG31324 + chr3R 26122605 intron CG31324 + chr3R_36_26120001 chr3R_26120001 RAL-361 3655 chr3R 26126501 26126567 chr3R 26126637 26126703 30 136 8.5 10.5 9.5 2.9 202 chr3R 26126501 intron CG31324 + chr3R 26126602 intron CG31324 + chr3R 26126703 intron,5` UTR CG31324 +,CG14556 + chr3R_30_26125001 chr3R_26125001 RAL-361 3656 chr3R 26215736 26215779 chr3R 26221750 26221792 297 7 6010 9.0 8.5 8.8 0.7 6056 chr3R 26215736 intergenic not near genes chr3R 26218764 intergenic not near genes chr3R 26221792 intergenic not near genes chr3R_7_26215001 chr3R_26215001 RAL-361 3657 chr3R 26235459 26235512 chr3R 26235586 26235639 11 123 27.0 26.0 26.5 0.4 180 chr3R 26235459 5` UTR CR42745 + chr3R 26235549 5` UTR CR42745 + chr3R 26235639 intron CR42745 + chr3R_11_26235001 chr3R_26235001 RAL-361 3658 chr3R 26241213 26241280 chr3R 26241354 26241397 14 139 17.5 19.5 18.5 0.7 184 chr3R 26241213 intron CR42745 + chr3R 26241305 intron CR42745 + chr3R 26241397 intron CR42745 + chr3R_14_26240001 chr3R_26240001 RAL-361 3659 chr3R 26292086 26292120 chr3R 26292196 26292250 8 128 28.5 29.0 28.8 0.3 164 chr3R 26292086 intergenic not near genes chr3R 26292168 intergenic not near genes chr3R 26292250 intergenic not near genes chr3R_8_26290001 chr3R_26290001 RAL-361 3660 chr3R 26294687 26294741 chr3R 26294815 26294869 12 128 24.5 30.0 27.2 0.4 182 chr3R 26294687 intergenic not near genes chr3R 26294778 intergenic not near genes chr3R 26294869 intergenic not near genes chr3R_12_26290001 chr3R_26290001 RAL-361 3661 chr3R 26326644 26326680 chr3R 26326772 26326808 11 128 8.5 12.5 10.5 1.0 164 chr3R 26326644 intron CG33970 + chr3R 26326726 intron CG33970 + chr3R 26326808 intron CG33970 + chr3R_11_26325001 chr3R_26325001 RAL-361 3662 chr3R 26339186 26339253 chr3R 26339331 26339398 20 145 20.0 19.5 19.8 1.0 212 chr3R 26339186 intron CG33970 + chr3R 26339292 intron CG33970 + chr3R 26339398 intron CG33970 + chr3R_20_26335001 chr3R_26335001 RAL-361 3663 chr3R 26349216 26349238 chr3R 26349362 26349384 11 146 13.0 0.0 6.5 1.5 168 chr3R 26349216 intron CG33970 + chr3R 26349300 intron CG33970 + chr3R 26349384 intron CG33970 + chr3R_11_26345001 chr3R_26345001 RAL-361 3664 chr3R 26365068 26365137 chr3R 26365202 26365271 14 134 21.5 24.5 23.0 0.6 203 chr3R 26365068 intergenic not near genes chr3R 26365170 intergenic not near genes chr3R 26365271 intergenic not near genes chr3R_14_26365001 chr3R_26365001 RAL-361 3665 chr3R 26373951 26373991 chr3R 26374098 26374138 7 147 17.0 22.5 19.8 0.3 187 chr3R 26373951 intergenic not near genes chr3R 26374044 intergenic not near genes chr3R 26374138 intergenic not near genes chr3R_7_26370001 chr3R_26370001 RAL-361 3666 chr3R 26376282 26376357 chr3R 26385492 26385581 roo 23 9214 8.0 0.0 4.0 4.6 9299 chr3R 26376282 intergenic not near genes chr3R 26380932 intergenic not near genes chr3R 26385581 intergenic not near genes chr3R_23_26380001 chr3R_26380001 RAL-361 3667 chr3R 26386854 26386918 chr3R 26386983 26387047 6 128 26.0 26.5 26.2 0.2 193 chr3R 26386854 intergenic not near genes chr3R 26386950 intergenic not near genes chr3R 26387047 intergenic not near genes chr3R_6_26385001 chr3R_26385001 RAL-361 3668 chr3R 26387289 26387351 chr3R 26387410 26387478 7 123 20.5 21.5 21.0 0.3 189 chr3R 26387289 intergenic not near genes chr3R 26387384 intergenic not near genes chr3R 26387478 intergenic not near genes chr3R_7_26385001 chr3R_26385001 RAL-361 3669 chr3R 26409899 26409944 chr3R 26410035 26410080 8 136 19.0 20.5 19.8 0.4 181 chr3R 26409899 intergenic not near genes chr3R 26409990 intergenic not near genes chr3R 26410080 intergenic not near genes chr3R_8_26405001 chr3R_26405001 RAL-361 3670 chr3R 26456601 26456605 chr3R 26456729 26456733 5 128 35.5 24.0 29.8 0.2 132 chr3R 26456601 intergenic CG14237 +,Pdf - chr3R 26456667 intergenic CG14237 + chr3R 26456733 intergenic CG14237 + chr3R_5_26455001 chr3R_26455001 RAL-361 3671 chr3R 26456606 26456667 chr3R 26456722 26456757 16 123 24.5 26.0 25.2 0.6 151 chr3R 26456606 intergenic CG14237 +,Pdf - chr3R 26456682 intergenic CG14237 + chr3R 26456757 intergenic CG14237 + chr3R_16_26455001 chr3R_26455001 RAL-361 3672 chr3R 26482329 26482341 chr3R 26482449 26482469 5 125 23.5 25.0 24.2 0.2 140 chr3R 26482329 intron plum - chr3R 26482399 intron plum - chr3R 26482469 intron plum - chr3R_5_26480001 chr3R_26480001 RAL-361 3673 chr3R 26482352 26482382 chr3R 26482448 26482510 10 121 24.5 25.0 24.8 0.4 158 chr3R 26482352 intron plum - chr3R 26482431 intron plum - chr3R 26482510 intron plum - chr3R_10_26480001 chr3R_26480001 RAL-361 3674 chr3R 26488349 26488368 chr3R 26488494 26488512 6 145 22.0 14.0 18.0 0.3 163 chr3R 26488349 intron plum - chr3R 26488430 intron plum - chr3R 26488512 intron plum - chr3R_6_26485001 chr3R_26485001 RAL-361 3675 chr3R 26510472 26510533 chr3R 26519577 26519638 roo 23 9104 6.0 7.5 6.8 2.9 9166 chr3R 26510472 intron plum - chr3R 26515055 intron plum - chr3R 26519638 intron,5` UTR plum -,CR45226 + chr3R_23_26515001 chr3R_26515001 RAL-361 3676 chr3R 26542001 26542073 chr3R 26542142 26542214 23 141 23.0 19.5 21.2 1.0 213 chr3R 26542001 intron scrib + chr3R 26542108 intron scrib + chr3R 26542214 intron scrib + chr3R_23_26540001 chr3R_26540001 RAL-361 3677 chr3R 26558276 26558350 chr3R 26565639 26565706 Stalker4 21 7360 4.5 10.5 7.5 2.5 7430 chr3R 26558276 intron scrib + chr3R 26561991 intron scrib + chr3R 26565706 intron scrib + chr3R_21_26560001 chr3R_26560001 RAL-361 3678 chr3R 26607697 26607765 chr3R 26607823 26607854 18 124 22.5 20.5 21.5 0.8 157 chr3R 26607697 5` UTR CR44951 + chr3R 26607776 5` UTR CR44951 + chr3R 26607854 5` UTR CR44951 + chr3R_18_26605001 chr3R_26605001 RAL-361 3679 chr3R 26642691 26642745 chr3R 26643134 26643188 jockey 24 442 12.0 9.5 10.8 2.0 497 chr3R 26642691 intergenic not near genes chr3R 26642940 intergenic not near genes chr3R 26643188 intergenic not near genes chr3R_24_26640001 chr3R_26640001 RAL-361 3680 chr3R 26705333 26705409 chr3R 26705491 26705554 21 155 10.5 9.0 9.8 1.9 221 chr3R 26705333 intron amon - chr3R 26705444 intron amon - chr3R 26705554 intron amon - chr3R_21_26705001 chr3R_26705001 RAL-361 3681 chr3R 26728457 26728507 chr3R 26728568 26728643 7 124 23.0 22.0 22.5 0.3 186 chr3R 26728457 intron CG14246 + chr3R 26728550 intron CG14246 + chr3R 26728643 intron CG14246 + chr3R_7_26725001 chr3R_26725001 RAL-361 3682 chr3R 26770191 26770264 chr3R 26770318 26770391 26 127 10.0 11.5 10.8 2.2 200 chr3R 26770191 intergenic CR45563 + chr3R 26770291 intergenic CR45563 + chr3R 26770391 intergenic not near genes chr3R_26_26770001 chr3R_26770001 RAL-361 3683 chr3R 26810508 26810573 chr3R 26811043 26811108 roo 28 535 7.0 12.5 9.8 2.6 600 chr3R 26810508 intron Tl + chr3R 26810808 intron Tl + chr3R 26811108 intron Tl + chr3R_28_26810001 chr3R_26810001 RAL-361 3684 chr3R 26845549 26845596 chr3R 26845679 26845726 12 128 14.0 17.0 15.5 0.7 177 chr3R 26845549 intron Lerp - chr3R 26845638 intron Lerp - chr3R 26845726 intron Lerp - chr3R_12_26845001 chr3R_26845001 RAL-361 3685 chr3R 26917215 26917227 chr3R 26917346 26917358 4 131 10.0 11.5 10.8 0.3 143 chr3R 26917215 intron sda + chr3R 26917286 intron sda + chr3R 26917358 intron sda + chr3R_4_26915001 chr3R_26915001 RAL-361 3686 chr3R 26927924 26927987 chr3R 26928314 26928377 13 390 30.5 27.0 28.8 0.4 453 chr3R 26927924 intron sda + chr3R 26928150 intron sda + chr3R 26928377 intron sda + chr3R_13_26925001 chr3R_26925001 RAL-361 3687 chr3R 26945387 26945434 chr3R 26945517 26945556 15 129 20.5 20.0 20.2 0.7 169 chr3R 26945387 intergenic sda +,CG14252 + chr3R 26945472 intergenic CG14252 +,sda + chr3R 26945556 5` UTR CG14252 + chr3R_15_26945001 chr3R_26945001 RAL-361 3688 chr3R 26960686 26960739 chr3R 26960825 26960878 9 126 26.0 22.5 24.2 0.4 192 chr3R 26960686 intergenic Tsp97E - chr3R 26960782 intergenic Tsp97E - chr3R 26960878 intergenic Tsp97E - chr3R_9_26960001 chr3R_26960001 RAL-361 3689 chr3R 26990847 26990879 chr3R 26990979 26991013 15 132 19.0 19.5 19.2 0.7 166 chr3R 26990847 intergenic not near genes chr3R 26990930 intergenic not near genes chr3R 26991013 intergenic not near genes chr3R_15_26990001 chr3R_26990001 RAL-361 3690 chr3R 26990880 26990914 chr3R 26990971 26991048 11 129 15.5 18.5 17.0 0.6 168 chr3R 26990880 intergenic not near genes chr3R 26990964 intergenic not near genes chr3R 26991048 intergenic not near genes chr3R_11_26990001 chr3R_26990001 RAL-361 3691 chr3R 27007361 27007426 chr3R 27016546 27016611 roo 23 9184 8.0 5.0 6.5 3.1 9250 chr3R 27007361 intron RYa-R + chr3R 27011986 intron RYa-R + chr3R 27016611 intron RYa-R + chr3R_23_27010001 chr3R_27010001 RAL-361 3692 chr3R 27020200 27020211 chr3R 27020290 27020343 4 121 29.0 25.5 27.2 0.1 143 chr3R 27020200 intron RYa-R + chr3R 27020272 intron,3` UTR RYa-R +,CG6283 - chr3R 27020343 intron,exon RYa-R +,CG6283 - chr3R_4_27020001 chr3R_27020001 RAL-361 3693 chr3R 27027633 27027698 chr3R 27027767 27027830 20 133 23.5 13.0 18.2 1.0 197 chr3R 27027633 intron RYa-R + chr3R 27027732 intron RYa-R + chr3R 27027830 intron RYa-R + chr3R_20_27025001 chr3R_27025001 RAL-361 3694 chr3R 27028676 27028752 chr3R 27028805 27028871 25 129 7.5 6.5 7.0 3.1 195 chr3R 27028676 exon RYa-R + chr3R 27028774 intron RYa-R + chr3R 27028871 intron RYa-R + chr3R_25_27025001 chr3R_27025001 RAL-361 3695 chr3R 27030171 27030250 chr3R 27030350 27030427 15 177 34.0 27.0 30.5 0.5 256 chr3R 27030171 intron RYa-R + chr3R 27030299 intron RYa-R + chr3R 27030427 intron RYa-R + chr3R_15_27030001 chr3R_27030001 RAL-361 3696 chr3R 27042268 27042327 chr3R 27042486 27042515 6 206 26.0 29.0 27.5 0.2 247 chr3R 27042268 intron RYa-R + chr3R 27042392 intron RYa-R + chr3R 27042515 intron RYa-R + chr3R_6_27040001 chr3R_27040001 RAL-361 3697 chr3R 27051617 27051644 chr3R 27051758 27051785 7 141 27.5 16.5 22.0 0.3 168 chr3R 27051617 intron RYa-R + chr3R 27051701 intron RYa-R + chr3R 27051785 intron RYa-R + chr3R_7_27050001 chr3R_27050001 RAL-361 3698 chr3R 27101198 27101271 chr3R 27101329 27101350 15 126 18.0 18.5 18.2 0.8 152 chr3R 27101198 intergenic CG17189 + chr3R 27101274 intergenic CG17189 + chr3R 27101350 intergenic CG17189 + chr3R_15_27100001 chr3R_27100001 RAL-361 3699 chr3R 27140467 27140541 chr3R 27148127 27148201 412 40 7659 10.5 10.0 10.2 3.6 7734 chr3R 27140467 intron CG6051 - chr3R 27144334 intron CG6051 - chr3R 27148201 intron CG6051 - chr3R_40_27140001 chr3R_27140001 RAL-361 3700 chr3R 27152349 27152398 chr3R 27152463 27152503 14 132 33.5 35.0 34.2 0.4 154 chr3R 27152349 intron Men-b + chr3R 27152426 intron Men-b + chr3R 27152503 intron Men-b + chr3R_14_27150001 chr3R_27150001 RAL-361 3701 chr3R 27156411 27156474 chr3R 27156615 27156662 8 206 31.0 28.5 29.8 0.3 251 chr3R 27156411 intron Men-b + chr3R 27156536 intron Men-b + chr3R 27156662 intron Men-b + chr3R_8_27155001 chr3R_27155001 RAL-361 3702 chr3R 27171201 27171252 chr3R 27171349 27171400 15 148 10.0 15.5 12.8 1.1 199 chr3R 27171201 intergenic not near genes chr3R 27171300 intergenic not near genes chr3R 27171400 intergenic not near genes chr3R_15_27170001 chr3R_27170001 RAL-361 3703 chr3R 27200114 27200159 chr3R 27200251 27200296 9 135 25.5 27.5 26.5 0.3 182 chr3R 27200114 intergenic not near genes chr3R 27200205 intergenic not near genes chr3R 27200296 intergenic not near genes chr3R_9_27200001 chr3R_27200001 RAL-361 3704 chr3R 27254238 27254311 chr3R 27254409 27254482 16 165 12.0 15.5 13.8 1.1 244 chr3R 27254238 intron TfIIA-L + chr3R 27254360 intron TfIIA-L + chr3R 27254482 intron TfIIA-L + chr3R_16_27250001 chr3R_27250001 RAL-361 3705 chr3R 27293752 27293824 chr3R 27293902 27293960 13 149 26.0 26.5 26.2 0.5 208 chr3R 27293752 intergenic not near genes chr3R 27293856 intergenic CG3339 - chr3R 27293960 intergenic CG3339 - chr3R_13_27290001 chr3R_27290001 RAL-361 3706 chr3R 27315947 27316012 chr3R 27316073 27316138 22 123 8.0 9.0 8.5 2.3 191 chr3R 27315947 intron CG3339 - chr3R 27316042 intron CG3339 - chr3R 27316138 exon CG3339 - chr3R_22_27315001 chr3R_27315001 RAL-361 3707 chr3R 27317050 27317103 chr3R 27317180 27317232 6 126 33.0 36.0 34.5 0.2 182 chr3R 27317050 intron CG3339 - chr3R 27317141 intron CG3339 - chr3R 27317232 exon CG3339 - chr3R_6_27315001 chr3R_27315001 RAL-361 3708 chr3R 27329429 27329497 chr3R 27329556 27329624 21 126 8.5 10.5 9.5 2.0 195 chr3R 27329429 intergenic CG3330 - chr3R 27329526 intergenic CG3330 - chr3R 27329624 intergenic CG3330 - chr3R_21_27325001 chr3R_27325001 RAL-361 3709 chr3R 27342751 27342817 chr3R 27351382 27351448 Tirant 27 8630 11.0 8.5 9.8 2.5 8697 chr3R 27342751 intron CG42534 + chr3R 27347100 intron CG42534 + chr3R 27351448 intron CG42534 + chr3R_27_27345001 chr3R_27345001 RAL-361 3710 chr3R 27354774 27354844 chr3R 27355214 27355269 14 437 14.0 10.0 12.0 1.1 495 chr3R 27354774 intron CG42534 + chr3R 27355022 intron CG42534 + chr3R 27355269 intron CG42534 + chr3R_14_27355001 chr3R_27355001 RAL-361 3711 chr3R 27377429 27377494 chr3R 27377567 27377632 11 138 9.5 11.0 10.2 1.0 203 chr3R 27377429 3` UTR side - chr3R 27377530 3` UTR side - chr3R 27377632 3` UTR side - chr3R_11_27375001 chr3R_27375001 RAL-361 3712 chr3R 27398527 27398535 chr3R 27398653 27398661 5 126 19.5 19.0 19.2 0.2 134 chr3R 27398527 intron side - chr3R 27398594 intron side - chr3R 27398661 intron side - chr3R_5_27395001 chr3R_27395001 RAL-361 3713 chr3R 27398536 27398601 chr3R 27398651 27398728 10 124 13.0 18.5 15.8 0.6 192 chr3R 27398536 intron side - chr3R 27398632 intron side - chr3R 27398728 intron side - chr3R_10_27395001 chr3R_27395001 RAL-361 3714 chr3R 27420133 27420167 chr3R 27420270 27420298 10 136 26.5 30.0 28.2 0.3 165 chr3R 27420133 intron side - chr3R 27420216 intron side - chr3R 27420298 intron side - chr3R_10_27420001 chr3R_27420001 RAL-361 3715 chr3R 27445205 27445271 chr3R 27445332 27445398 9 126 20.0 28.5 24.2 0.4 193 chr3R 27445205 intergenic not near genes chr3R 27445302 intergenic not near genes chr3R 27445398 intergenic not near genes chr3R_9_27445001 chr3R_27445001 RAL-361 3716 chr3R 27486804 27486831 chr3R 27486944 27486971 11 140 13.5 14.0 13.8 0.7 167 chr3R 27486804 intergenic not near genes chr3R 27486888 intergenic not near genes chr3R 27486971 intergenic not near genes chr3R_11_27485001 chr3R_27485001 RAL-361 3717 chr3R 27492334 27492344 chr3R 27492471 27492481 4 137 15.5 16.5 16.0 0.2 147 chr3R 27492334 intergenic not near genes chr3R 27492408 intergenic not near genes chr3R 27492481 intergenic not near genes chr3R_4_27490001 chr3R_27490001 RAL-361 3718 chr3R 27492349 27492408 chr3R 27492470 27492547 19 135 14.5 17.0 15.8 1.1 198 chr3R 27492349 intergenic not near genes chr3R 27492448 intergenic not near genes chr3R 27492547 intergenic not near genes chr3R_19_27490001 chr3R_27490001 RAL-361 3719 chr3R 27506251 27506290 chr3R 27506383 27506422 14 132 0.0 10.0 5.0 2.3 171 chr3R 27506251 intergenic not near genes chr3R 27506336 intergenic not near genes chr3R 27506422 intergenic not near genes chr3R_14_27505001 chr3R_27505001 RAL-361 3720 chr3R 27506293 27506294 chr3R 27506381 27506406 4 116 0.0 9.5 4.8 0.7 113 chr3R 27506293 intergenic not near genes chr3R 27506350 intergenic not near genes chr3R 27506406 intergenic not near genes chr3R_4_27505001 chr3R_27505001 RAL-361 3721 chr3R 27521117 27521181 chr3R 27530376 27530440 roo 26 9259 10.0 10.5 10.2 2.3 9323 chr3R 27521117 intron CG12885 + chr3R 27525778 intron CG12885 + chr3R 27530440 intron CG12885 + chr3R_26_27525001 chr3R_27525001 RAL-361 3722 chr3R 27578452 27578506 chr3R 27578575 27578646 8 137 24.5 23.5 24.0 0.3 194 chr3R 27578452 intron wdb - chr3R 27578549 intron wdb - chr3R 27578646 intron wdb - chr3R_8_27575001 chr3R_27575001 RAL-361 3723 chr3R 27619682 27619729 chr3R 27619821 27619903 12 159 16.0 14.0 15.0 0.8 221 chr3R 27619682 intron Tusp + chr3R 27619792 intron Tusp + chr3R 27619903 intron Tusp + chr3R_12_27615001 chr3R_27615001 RAL-361 3724 chr3R 27627043 27627119 chr3R 27627195 27627249 15 148 31.0 28.0 29.5 0.5 206 chr3R 27627043 intron Tusp + chr3R 27627146 intron Tusp + chr3R 27627249 intron Tusp + chr3R_15_27625001 chr3R_27625001 RAL-361 3725 chr3R 27644214 27644225 chr3R 27644356 27644367 10 142 28.5 23.0 25.8 0.4 153 chr3R 27644214 intron tau - chr3R 27644290 intron tau - chr3R 27644367 intron tau - chr3R_10_27640001 chr3R_27640001 RAL-361 3726 chr3R 27644226 27644279 chr3R 27644343 27644421 16 140 19.5 19.0 19.2 0.8 195 chr3R 27644226 intron tau - chr3R 27644324 intron tau - chr3R 27644421 intron tau - chr3R_16_27640001 chr3R_27640001 RAL-361 3727 chr3R 27679904 27679964 chr3R 27680077 27680137 22 169 16.0 21.0 18.5 1.1 233 chr3R 27679904 exon CG12883 + chr3R 27680020 3` UTR CG12883 + chr3R 27680137 3` UTR CG12883 + chr3R_22_27680001 chr3R_27680001 RAL-361 3728 chr3R 27705331 27705383 chr3R 27705461 27705513 8 130 20.0 20.0 20.0 0.4 182 chr3R 27705331 exon CG12428 - chr3R 27705422 intron CG12428 - chr3R 27705513 exon CG12428 - chr3R_8_27705001 chr3R_27705001 RAL-361 3729 chr3R 27706733 27706795 chr3R 27706860 27706922 10 126 33.0 31.0 32.0 0.3 189 chr3R 27706733 5` UTR CG12428 - chr3R 27706828 intergenic CG12428 -,CG12877 + chr3R 27706922 intergenic CG12428 -,CG12877 + chr3R_10_27705001 chr3R_27705001 RAL-361 3730 chr3R 27725528 27725584 chr3R 27731020 27731076 I-element 29 5492 12.5 14.0 13.2 2.0 5548 chr3R 27725528 intergenic not near genes chr3R 27728302 intergenic not near genes chr3R 27731076 intergenic not near genes chr3R_29_27725001 chr3R_27725001 RAL-361 3731 chr3R 27731153 27731223 chr3R 27731284 27731354 18 125 20.0 19.5 19.8 0.9 201 chr3R 27731153 intergenic not near genes chr3R 27731254 intergenic not near genes chr3R 27731354 intergenic not near genes chr3R_18_27730001 chr3R_27730001 RAL-361 3732 chr3R 27747952 27748016 chr3R 27748080 27748133 13 126 21.0 21.5 21.2 0.6 181 chr3R 27747952 3` UTR Ets98B + chr3R 27748042 3` UTR Ets98B + chr3R 27748133 3` UTR Ets98B + chr3R_13_27745001 chr3R_27745001 RAL-361 3733 chr3R 27779227 27779274 chr3R 27779354 27779401 14 124 12.0 8.0 10.0 1.3 174 chr3R 27779227 exon CG34353 - chr3R 27779314 intron CG34353 - chr3R 27779401 intron CG34353 - chr3R_14_27775001 chr3R_27775001 RAL-361 3734 chr3R 27779275 27779289 chr3R 27779350 27779416 10 111 8.0 8.5 8.2 1.1 141 chr3R 27779275 exon CG34353 - chr3R 27779346 intron CG34353 - chr3R 27779416 intron CG34353 - chr3R_10_27775001 chr3R_27775001 RAL-361 3735 chr3R 27791594 27791647 chr3R 27794794 27794847 Rt1c 22 3194 16.5 10.5 13.5 1.5 3253 chr3R 27791594 intron CG34353 - chr3R 27793220 intron CG34353 - chr3R 27794847 intron CG34353 - chr3R_22_27790001 chr3R_27790001 RAL-361 3736 chr3R 27799888 27799964 chr3R 27800020 27800095 48 132 8.0 7.5 7.8 5.5 207 chr3R 27799888 intron CG34353 - chr3R 27799992 intron CG34353 - chr3R 27800095 intron CG34353 - chr3R_48_27795001 chr3R_27795001 RAL-361 3737 chr3R 27812388 27812455 chr3R 27812515 27812528 9 121 24.0 25.0 24.5 0.4 140 chr3R 27812388 intron CG34353 - chr3R 27812458 intron CG34353 - chr3R 27812528 intron CG34353 - chr3R_9_27810001 chr3R_27810001 RAL-361 3738 chr3R 27829860 27829929 chr3R 27829983 27830058 11 128 9.5 4.5 7.0 1.4 198 chr3R 27829860 intron CG34353 - chr3R 27829959 intron CG34353 - chr3R 27830058 intron CG34353 - chr3R_11_27825001 chr3R_27825001 RAL-361 3739 chr3R 27840193 27840268 chr3R 27840373 27840451 7 183 0.0 0.0 0.0 7.0 258 chr3R 27840193 intron CG34353 - chr3R 27840322 intron CG34353 - chr3R 27840451 intron CG34353 - chr3R_7_27840001 chr3R_27840001 RAL-361 3740 chr3R 27856716 27856780 chr3R 27858249 27858313 hopper2 30 1531 12.0 14.5 13.2 2.1 1597 chr3R 27856716 intron CG34353 - chr3R 27857514 intron CG34353 - chr3R 27858313 intron CG34353 - chr3R_30_27855001 chr3R_27855001 RAL-361 3741 chr3R 27862928 27862972 chr3R 27868263 27868327 Transpac 12 5354 1.0 4.5 2.8 3.2 5399 chr3R 27862928 intron CG34353 - chr3R 27865628 intron CG34353 - chr3R 27868327 intron CG34353 - chr3R_12_27865001 chr3R_27865001 RAL-361 3742 chr3R 27875660 27875724 chr3R 27882765 27882829 297 26 7104 9.0 12.5 10.8 2.2 7169 chr3R 27875660 intron CG34353 - chr3R 27879244 intron CG34353 - chr3R 27882829 intron CG34353 - chr3R_26_27875001 chr3R_27875001 RAL-361 3743 chr3R 27896208 27896236 chr3R 27896338 27896371 7 131 19.5 8.5 14.0 0.5 163 chr3R 27896208 intron CG34353 - chr3R 27896290 intron CG34353 - chr3R 27896371 intron CG34353 - chr3R_7_27895001 chr3R_27895001 RAL-361 3744 chr3R 27911197 27911257 chr3R 27911325 27911385 15 128 29.5 26.5 28.0 0.5 188 chr3R 27911197 intergenic not near genes chr3R 27911291 intergenic not near genes chr3R 27911385 intergenic not near genes chr3R_15_27910001 chr3R_27910001 RAL-361 3745 chr3R 27943188 27943260 chr3R 27943334 27943393 17 144 39.5 37.5 38.5 0.4 205 chr3R 27943188 3` UTR mfrn - chr3R 27943290 3` UTR mfrn - chr3R 27943393 3` UTR mfrn - chr3R_17_27940001 chr3R_27940001 RAL-361 3746 chr3R 28017963 28017983 chr3R 28018046 28018079 4 114 16.5 19.5 18.0 0.2 116 chr3R 28017963 intergenic not near genes chr3R 28018021 intergenic not near genes chr3R 28018079 intergenic not near genes chr3R_4_28015001 chr3R_28015001 RAL-361 3747 chr3R 28039952 28039997 chr3R 28040070 28040130 5 127 12.0 12.5 12.2 0.4 178 chr3R 28039952 intron CG34362 + chr3R 28040041 intron CG34362 + chr3R 28040130 intron CG34362 + chr3R_5_28040001 chr3R_28040001 RAL-361 3748 chr3R 28054409 28054468 chr3R 28054535 28054594 12 125 16.5 16.0 16.2 0.7 185 chr3R 28054409 intron CG34362 + chr3R 28054502 intron CG34362 + chr3R 28054594 intron CG34362 + chr3R_12_28050001 chr3R_28050001 RAL-361 3749 chr3R 28068452 28068510 chr3R 28073942 28074002 I-element 11 5489 4.5 7.5 6.0 1.6 5550 chr3R 28068452 intron CG34362 + chr3R 28071227 intron CG34362 + chr3R 28074002 intron CG34362 + chr3R_11_28070001 chr3R_28070001 RAL-361 3750 chr3R 28078279 28078349 chr3R 28078448 28078518 11 169 11.0 17.0 14.0 0.7 239 chr3R 28078279 intron CG34362 + chr3R 28078398 intron CG34362 + chr3R 28078518 intron CG34362 + chr3R_11_28075001 chr3R_28075001 RAL-361 3751 chr3R 28103283 28103347 chr3R 28103421 28103490 7 141 15.0 17.5 16.2 0.4 207 chr3R 28103283 intergenic not near genes chr3R 28103386 intergenic not near genes chr3R 28103490 intergenic not near genes chr3R_7_28100001 chr3R_28100001 RAL-361 3752 chr3R 28118805 28118878 chr3R 28118935 28119009 31 129 7.5 8.5 8.0 3.4 204 chr3R 28118805 intergenic not near genes chr3R 28118907 intergenic not near genes chr3R 28119009 intergenic not near genes chr3R_31_28115001 chr3R_28115001 RAL-361 3753 chr3R 28173631 28173697 chr3R 28181111 28181177 mdg1 29 7480 7.5 8.5 8.0 3.2 7546 chr3R 28173631 intron CG34354 + chr3R 28177404 intron CG34354 + chr3R 28181177 intron CG34354 + chr3R_29_28175001 chr3R_28175001 RAL-361 3754 chr3R 28230994 28231027 chr3R 28231122 28231132 11 125 12.5 25.0 18.8 0.6 138 chr3R 28230994 intron CG34354 + chr3R 28231063 intron CG34354 + chr3R 28231132 intron CG34354 + chr3R_11_28230001 chr3R_28230001 RAL-361 3755 chr3R 28234467 28234538 chr3R 28234601 28234672 9 129 17.0 16.0 16.5 0.5 205 chr3R 28234467 intron CG34354 + chr3R 28234570 intron CG34354 + chr3R 28234672 intron CG34354 + chr3R_9_28230001 chr3R_28230001 RAL-361 3756 chr3R 28253295 28253341 chr3R 28255855 28255901 jockey 24 2557 17.0 11.0 14.0 1.6 2606 chr3R 28253295 intergenic not near genes chr3R 28254598 intergenic not near genes chr3R 28255901 intergenic not near genes chr3R_24_28250001 chr3R_28250001 RAL-361 3757 chr3R 28253343 28253360 chr3R 28255852 28255920 jockey 7 2553 11.0 10.0 10.5 0.6 2577 chr3R 28253343 intergenic not near genes chr3R 28254632 intergenic not near genes chr3R 28255920 intergenic not near genes chr3R_7_28250001 chr3R_28250001 RAL-361 3758 chr3R 28255912 28255985 chr3R 28256374 28256447 10 460 21.0 25.0 23.0 0.4 535 chr3R 28255912 intergenic not near genes chr3R 28256180 intergenic not near genes chr3R 28256447 intergenic not near genes chr3R_10_28255001 chr3R_28255001 RAL-361 3759 chr3R 28262172 28262229 chr3R 28262301 28262358 11 129 17.5 14.5 16.0 0.6 186 chr3R 28262172 intergenic not near genes chr3R 28262265 intergenic CG43125 - chr3R 28262358 intergenic CG43125 - chr3R_11_28260001 chr3R_28260001 RAL-361 3760 chr3R 28298639 28298700 chr3R 28298900 28298961 14 260 20.0 6.5 13.2 1.0 322 chr3R 28298639 intergenic not near genes chr3R 28298800 intergenic not near genes chr3R 28298961 intergenic not near genes chr3R_14_28295001 chr3R_28295001 RAL-361 3761 chr3R 28300059 28300076 chr3R 28300188 28300205 8 128 19.5 20.0 19.8 0.4 146 chr3R 28300059 intergenic not near genes chr3R 28300132 intergenic not near genes chr3R 28300205 intergenic not near genes chr3R_8_28300001 chr3R_28300001 RAL-361 3762 chr3R 28302054 28302103 chr3R 28302546 28302595 jockey 9 492 7.0 8.0 7.5 1.1 541 chr3R 28302054 intergenic not near genes chr3R 28302324 intergenic not near genes chr3R 28302595 intergenic not near genes chr3R_9_28300001 chr3R_28300001 RAL-361 3763 chr3R 28331490 28331529 chr3R 28331619 28331658 9 129 15.5 22.5 19.0 0.5 168 chr3R 28331490 intron larp - chr3R 28331574 intron larp - chr3R 28331658 intron larp - chr3R_9_28330001 chr3R_28330001 RAL-361 3764 chr3R 28345604 28345672 chr3R 28345730 28345798 5 126 25.5 25.5 25.5 0.2 194 chr3R 28345604 intergenic Moca-cyp + chr3R 28345701 intergenic not near genes chr3R 28345798 intergenic not near genes chr3R_5_28345001 chr3R_28345001 RAL-361 3765 chr3R 28351939 28351990 chr3R 28352065 28352116 7 125 13.0 26.5 19.8 0.3 177 chr3R 28351939 intergenic Or98b + chr3R 28352028 intergenic Or98b + chr3R 28352116 intergenic Or98b + chr3R_7_28350001 chr3R_28350001 RAL-361 3766 chr3R 28352473 28352525 chr3R 28352860 28352913 15 389 20.5 23.0 21.8 0.7 440 chr3R 28352473 exon Or98b + chr3R 28352693 exon Or98b + chr3R 28352913 exon Or98b + chr3R_15_28350001 chr3R_28350001 RAL-361 3767 chr3R 28365200 28365252 chr3R 28365336 28365388 8 136 24.5 23.5 24.0 0.3 188 chr3R 28365200 intergenic not near genes chr3R 28365294 intergenic not near genes chr3R 28365388 intergenic not near genes chr3R_8_28365001 chr3R_28365001 RAL-361 3768 chr3R 28380794 28380821 chr3R 28381043 28381094 6 266 13.0 11.0 12.0 0.5 300 chr3R 28380794 intergenic not near genes chr3R 28380944 intergenic not near genes chr3R 28381094 intergenic not near genes chr3R_6_28380001 chr3R_28380001 RAL-361 3769 chr3R 28390080 28390143 chr3R 28390196 28390223 25 121 4.5 9.0 6.8 3.2 143 chr3R 28390080 intergenic not near genes chr3R 28390152 intergenic not near genes chr3R 28390223 intergenic not near genes chr3R_25_28390001 chr3R_28390001 RAL-361 3770 chr3R 28393651 28393722 chr3R 28393801 28393872 9 150 25.0 24.5 24.8 0.3 221 chr3R 28393651 intergenic not near genes chr3R 28393762 intergenic not near genes chr3R 28393872 intergenic not near genes chr3R_9_28390001 chr3R_28390001 RAL-361 3771 chr3R 28415683 28415753 chr3R 28415818 28415888 13 132 29.0 27.0 28.0 0.4 205 chr3R 28415683 intergenic not near genes chr3R 28415786 intergenic not near genes chr3R 28415888 intergenic not near genes chr3R_13_28415001 chr3R_28415001 RAL-361 3772 chr3R 28421644 28421685 chr3R 28421747 28421798 6 118 21.5 18.5 20.0 0.3 154 chr3R 28421644 intron beat-VI + chr3R 28421721 intron beat-VI + chr3R 28421798 intron beat-VI + chr3R_6_28420001 chr3R_28420001 RAL-361 3773 chr3R 28424038 28424094 chr3R 28424226 28424282 13 188 14.5 17.0 15.8 0.8 244 chr3R 28424038 intron beat-VI + chr3R 28424160 intron beat-VI + chr3R 28424282 intron beat-VI + chr3R_13_28420001 chr3R_28420001 RAL-361 3774 chr3R 28562673 28562696 chr3R 28562902 28562925 9 228 31.0 22.0 26.5 0.3 252 chr3R 28562673 intergenic not near genes chr3R 28562799 intergenic not near genes chr3R 28562925 intergenic not near genes chr3R_9_28560001 chr3R_28560001 RAL-361 3775 chr3R 28562699 28562726 chr3R 28562892 28562955 10 225 26.5 21.5 24.0 0.4 256 chr3R 28562699 intergenic not near genes chr3R 28562827 intergenic not near genes chr3R 28562955 intergenic not near genes chr3R_10_28560001 chr3R_28560001 RAL-361 3776 chr3R 28575865 28575880 chr3R 28576034 28576051 4 170 25.0 26.5 25.8 0.1 186 chr3R 28575865 intergenic not near genes chr3R 28575958 intergenic not near genes chr3R 28576051 intergenic not near genes chr3R_4_28575001 chr3R_28575001 RAL-361 3777 chr3R 28594070 28594076 chr3R 28594198 28594205 6 129 12.0 13.5 12.8 0.4 135 chr3R 28594070 5` UTR CR43440 + chr3R 28594138 5` UTR CR43440 + chr3R 28594205 5` UTR CR43440 + chr3R_6_28590001 chr3R_28590001 RAL-361 3778 chr3R 28594077 28594127 chr3R 28594185 28594256 13 127 3.5 10.5 7.0 1.6 179 chr3R 28594077 5` UTR CR43440 + chr3R 28594166 5` UTR CR43440 + chr3R 28594256 5` UTR CR43440 + chr3R_13_28590001 chr3R_28590001 RAL-361 3779 chr3R 28616425 28616500 chr3R 28616569 28616644 47 144 6.5 7.5 7.0 5.9 219 chr3R 28616425 intron CG10011 - chr3R 28616534 intron CG10011 - chr3R 28616644 intron CG10011 - chr3R_47_28615001 chr3R_28615001 RAL-361 3780 chr3R 28633149 28633217 chr3R 28633279 28633347 13 130 20.5 25.0 22.8 0.5 198 chr3R 28633149 intron CG10011 - chr3R 28633248 intron CG10011 - chr3R 28633347 intron CG10011 - chr3R_13_28630001 chr3R_28630001 RAL-361 3781 chr3R 28643289 28643307 chr3R 28643416 28643444 7 130 17.5 23.5 20.5 0.3 155 chr3R 28643289 intergenic CG14062 - chr3R 28643366 intergenic CG14062 - chr3R 28643444 intergenic not near genes chr3R_7_28640001 chr3R_28640001 RAL-361 3782 chr3R 28662328 28662399 chr3R 28662533 28662599 24 204 20.0 24.0 22.0 1.0 271 chr3R 28662328 intergenic not near genes chr3R 28662464 intergenic not near genes chr3R 28662599 intergenic not near genes chr3R_24_28660001 chr3R_28660001 RAL-361 3783 chr3R 28667479 28667526 chr3R 28667629 28667667 11 160 24.0 21.0 22.5 0.5 188 chr3R 28667479 intergenic not near genes chr3R 28667573 intergenic not near genes chr3R 28667667 intergenic not near genes chr3R_11_28665001 chr3R_28665001 RAL-361 3784 chr3R 28686683 28686706 chr3R 28686815 28686838 10 132 27.5 19.5 23.5 0.4 155 chr3R 28686683 intron CG9990 + chr3R 28686760 intron CG9990 + chr3R 28686838 intron CG9990 + chr3R_10_28685001 chr3R_28685001 RAL-361 3785 chr3R 28686707 28686758 chr3R 28686811 28686890 11 124 21.0 20.0 20.5 0.5 183 chr3R 28686707 intron CG9990 + chr3R 28686798 intron CG9990 + chr3R 28686890 intron CG9990 + chr3R_11_28685001 chr3R_28685001 RAL-361 3786 chr3R 28744362 28744429 chr3R 28744506 28744574 26 143 11.0 5.0 8.0 2.9 212 chr3R 28744362 5` UTR AstA-R2 - chr3R 28744468 5` UTR AstA-R2 - chr3R 28744574 5` UTR AstA-R2 - chr3R_26_28740001 chr3R_28740001 RAL-361 3787 chr3R 28758241 28758254 chr3R 28763908 28763921 roo 9 5667 17.0 1.5 9.2 0.9 5680 chr3R 28758241 intergenic aqrs - chr3R 28761081 intergenic not near genes chr3R 28763921 intergenic not near genes chr3R_9_28760001 chr3R_28760001 RAL-361 3788 chr3R 28758277 28758315 chr3R 28771334 28771372 Stalker4 18 13057 4.5 6.0 5.2 2.9 13095 chr3R 28758277 intergenic aqrs - chr3R 28764824 intergenic not near genes chr3R 28771372 intergenic not near genes chr3R_18_28760001 chr3R_28760001 RAL-361 3789 chr3R 28792829 28792848 chr3R 28797974 28797993 jockey 7 5141 20.5 7.5 14.0 0.5 5164 chr3R 28792829 intergenic not near genes chr3R 28795411 intergenic not near genes chr3R 28797993 intergenic not near genes chr3R_7_28795001 chr3R_28795001 RAL-361 3790 chr3R 28792855 28792902 chr3R 28797965 28797985 jockey 19 5131 5.5 6.0 5.8 2.8 5130 chr3R 28792855 intergenic not near genes chr3R 28795420 intergenic not near genes chr3R 28797985 intergenic not near genes chr3R_19_28795001 chr3R_28795001 RAL-361 3791 chr3R 28800234 28800299 chr3R 28800363 28800401 16 127 11.0 15.0 13.0 1.1 167 chr3R 28800234 intergenic not near genes chr3R 28800318 intergenic not near genes chr3R 28800401 intergenic not near genes chr3R_16_28800001 chr3R_28800001 RAL-361 3792 chr3R 28802007 28802043 chr3R 28802137 28802173 7 130 18.0 19.5 18.8 0.4 166 chr3R 28802007 intergenic not near genes chr3R 28802090 intergenic not near genes chr3R 28802173 intergenic not near genes chr3R_7_28800001 chr3R_28800001 RAL-361 3793 chr3R 28823060 28823130 chr3R 28823187 28823257 29 123 22.5 21.0 21.8 1.3 197 chr3R 28823060 exon CG1647 + chr3R 28823158 exon CG1647 + chr3R 28823257 exon CG1647 + chr3R_29_28820001 chr3R_28820001 RAL-361 3794 chr3R 21907534 21907536 chr3R 28831801 28831802 76 6924266 35.5 26.5 31.0 2.4 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_76_25365001 chr3R_25365001 RAL-361 3795 chr3R 28850707 28850750 chr3R 28850837 28850880 6 130 26.0 24.0 25.0 0.2 173 chr3R 28850707 intron spg + chr3R 28850794 intron spg + chr3R 28850880 intron spg + chr3R_6_28850001 chr3R_28850001 RAL-361 3796 chr3R 28922726 28922765 chr3R 28922852 28922891 6 126 15.5 5.5 10.5 0.5 165 chr3R 28922726 3` UTR Doa + chr3R 28922808 intergenic Doa +,CG11828 + chr3R 28922891 intergenic Doa +,CG11828 + chr3R_6_28920001 chr3R_28920001 RAL-361 3797 chr3R 28932759 28932812 chr3R 28933116 28933170 8 354 17.5 7.0 12.2 0.6 411 chr3R 28932759 intron CG14521 - chr3R 28932964 intron CG14521 - chr3R 28933170 intron CG14521 - chr3R_8_28930001 chr3R_28930001 RAL-361 3798 chr3R 28938077 28938152 chr3R 28938215 28938290 17 137 28.0 21.5 24.8 0.7 213 chr3R 28938077 intron CG14521 - chr3R 28938184 intron CG14521 - chr3R 28938290 intron CG14521 - chr3R_17_28935001 chr3R_28935001 RAL-361 3799 chr3R 28952648 28952711 chr3R 28953279 28953343 8 629 27.0 29.0 28.0 0.3 695 chr3R 28952648 intron CG14521 - chr3R 28952996 intron CG14521 - chr3R 28953343 intron CG14521 - chr3R_8_28950001 chr3R_28950001 RAL-361 3800 chr3R 28960464 28960536 chr3R 28960599 28960636 21 133 20.5 21.5 21.0 1.0 172 chr3R 28960464 intron CG14521 - chr3R 28960550 intron CG14521 - chr3R 28960636 intron CG14521 - chr3R_21_28960001 chr3R_28960001 RAL-361 3801 chr3R 28968379 28968419 chr3R 28968506 28968546 12 127 22.5 17.5 20.0 0.6 167 chr3R 28968379 intron CG14521 - chr3R 28968462 intron CG14521 - chr3R 28968546 intron CG14521 - chr3R_12_28965001 chr3R_28965001 RAL-361 3802 chr3R 28971119 28971159 chr3R 28971250 28971290 11 131 24.0 18.0 21.0 0.5 171 chr3R 28971119 5` UTR CR45669 + chr3R 28971204 5` UTR CR45669 + chr3R 28971290 5` UTR CR45669 + chr3R_11_28970001 chr3R_28970001 RAL-361 3803 chr3R 28985024 28985091 chr3R 28985176 28985245 17 153 2.5 13.5 8.0 1.9 221 chr3R 28985024 intergenic not near genes chr3R 28985134 intergenic not near genes chr3R 28985245 intergenic not near genes chr3R_17_28985001 chr3R_28985001 RAL-361 3804 chr3R 28986243 28986296 chr3R 28986370 28986423 17 124 14.0 10.0 12.0 1.3 180 chr3R 28986243 intergenic not near genes chr3R 28986333 intergenic not near genes chr3R 28986423 intergenic not near genes chr3R_17_28985001 chr3R_28985001 RAL-361 3805 chr3R 28988950 28989020 chr3R 28989084 28989149 8 131 11.0 15.5 13.2 0.6 199 chr3R 28988950 intergenic not near genes chr3R 28989050 intergenic not near genes chr3R 28989149 intergenic not near genes chr3R_8_28985001 chr3R_28985001 RAL-361 3806 chr3R 29009908 29009982 chr3R 29010064 29010138 26 156 15.5 15.5 15.5 1.6 230 chr3R 29009908 intron wat - chr3R 29010023 intron wat - chr3R 29010138 intron wat - chr3R_26_29010001 chr3R_29010001 RAL-361 3807 chr3R 29012785 29012836 chr3R 29012917 29012968 12 132 23.0 20.0 21.5 0.5 183 chr3R 29012785 intron wat - chr3R 29012876 intron wat - chr3R 29012968 intron wat - chr3R_12_29010001 chr3R_29010001 RAL-361 3808 chr3R 29032701 29032777 chr3R 29032828 29032910 24 127 17.5 14.5 16.0 1.4 209 chr3R 29032701 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R 29032806 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R 29032910 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R_24_29030001 chr3R_29030001 RAL-361 3809 chr3R 29054153 29054162 chr3R 29054281 29054290 4 128 0.0 6.0 3.0 1.0 137 chr3R 29054153 intergenic CG11843 +,CG11842 + chr3R 29054222 intergenic CG11843 +,CG11842 + chr3R 29054290 intergenic CG11843 +,CG11842 + chr3R_4_29050001 chr3R_29050001 RAL-361 3810 chr3R 29054166 29054274 chr3R 29054279 29054409 14 129 8.0 5.5 6.8 1.8 243 chr3R 29054166 intergenic CG11843 +,CG11842 + chr3R 29054288 intergenic CG11843 +,CG11842 + chr3R 29054409 5` UTR CG11843 + chr3R_14_29050001 chr3R_29050001 RAL-361 3811 chr3R 29079349 29079406 chr3R 29080771 29080828 NOF 13 1423 9.0 3.5 6.2 1.8 1479 chr3R 29079349 intron CG11873 + chr3R 29080088 intron CG11873 + chr3R 29080828 intron CG11873 + chr3R_13_29080001 chr3R_29080001 RAL-361 3812 chr3R 29091395 29091429 chr3R 29091526 29091567 10 133 17.0 28.5 22.8 0.4 172 chr3R 29091395 intron CG11873 + chr3R 29091481 intron CG11873 + chr3R 29091567 intron CG11873 + chr3R_10_29090001 chr3R_29090001 RAL-361 3813 chr3R 29128429 29128488 chr3R 29128582 29128642 13 154 32.5 29.5 31.0 0.4 213 chr3R 29128429 intergenic dgt6 -,CG11880 + chr3R 29128536 intergenic dgt6 -,CG11880 + chr3R 29128642 3` UTR dgt6 - chr3R_13_29125001 chr3R_29125001 RAL-361 3814 chr3R 29141529 29141552 chr3R 29141658 29141681 14 129 21.0 24.0 22.5 0.6 152 chr3R 29141529 intron CG14516 + chr3R 29141605 intron CG14516 + chr3R 29141681 intron CG14516 + chr3R_14_29140001 chr3R_29140001 RAL-361 3815 chr3R 29156176 29156231 chr3R 29156310 29156365 13 134 13.0 20.0 16.5 0.7 189 chr3R 29156176 intron Rpn2 + chr3R 29156270 intron Rpn2 + chr3R 29156365 exon Rpn2 + chr3R_13_29155001 chr3R_29155001 RAL-361 3816 chr3R 29213016 29213089 chr3R 29213149 29213222 48 132 8.5 11.5 10.0 4.4 206 chr3R 29213016 intergenic not near genes chr3R 29213119 intergenic not near genes chr3R 29213222 intergenic not near genes chr3R_48_29210001 chr3R_29210001 RAL-361 3817 chr3R 29237233 29237530 chr3R 29239291 29239472 23 2025 51.5 11.5 31.5 0.7 2239 chr3R 29237233 exon CG11951 - chr3R 29238352 intron CG11951 - chr3R 29239472 exon CG31427 - chr3R_23_29235001 chr3R_29235001 RAL-361 3818 chr3R 29237533 29237540 chr3R 29239462 29239483 4 1940 51.5 12.5 32.0 0.1 1950 chr3R 29237533 exon CG11951 - chr3R 29238508 intron CG11951 - chr3R 29239483 exon CG31427 - chr3R_4_29235001 chr3R_29235001 RAL-361 3819 chr3R 29238728 29238778 chr3R 29238892 29238942 12 162 24.5 28.5 26.5 0.4 214 chr3R 29238728 intergenic CG11951 -,CG31427 - chr3R 29238835 3` UTR CG31427 - chr3R 29238942 3` UTR CG31427 - chr3R_12_29235001 chr3R_29235001 RAL-361 3820 chr3R 29239198 29239216 chr3R 29245538 29245557 6 6340 1.0 38.0 19.5 0.3 6359 chr3R 29239198 exon CG31427 - chr3R 29242378 exon CG31445 - chr3R 29245557 exon SP1029 - chr3R_6_29240001 chr3R_29240001 RAL-361 3821 chr3R 29239220 29239242 chr3R 29245531 29245566 5 6321 5.0 34.0 19.5 0.2 6346 chr3R 29239220 exon CG31427 - chr3R 29242393 exon CG31445 - chr3R 29245566 exon SP1029 - chr3R_5_29240001 chr3R_29240001 RAL-361 3822 chr3R 29237522 29237540 chr3R 29239380 29239398 13 1858 51.5 14.5 33.0 0.4 1876 chr3R 29237522 exon CG11951 - chr3R 29238460 intron CG11951 - chr3R 29239398 intron CG31427 - chr3R_13_29235001 chr3R_29235001 RAL-361 3823 chr3R 29240428 29240501 chr3R 29240559 29240635 24 132 5.0 7.0 6.0 3.4 207 chr3R 29240428 intergenic CG31427 -,CG31445 - chr3R 29240532 intergenic CG31445 -,CG31427 - chr3R 29240635 3` UTR CG31445 - chr3R_24_29240001 chr3R_29240001 RAL-361 3824 chr3R 29256224 29256276 chr3R 29256353 29256406 8 128 24.5 29.5 27.0 0.3 182 chr3R 29256224 intergenic CG45544 +,stg - chr3R 29256315 intergenic CG45544 + chr3R 29256406 intergenic CG45544 + chr3R_8_29255001 chr3R_29255001 RAL-361 3825 chr3R 29264151 29264211 chr3R 29264303 29264362 4 152 28.0 21.5 24.8 0.2 211 chr3R 29264151 intergenic not near genes chr3R 29264256 intergenic not near genes chr3R 29264362 intergenic not near genes chr3R_4_29260001 chr3R_29260001 RAL-361 3826 chr3R 29319778 29319848 chr3R 29320147 29320217 jockey 14 367 4.0 5.5 4.8 2.4 439 chr3R 29319778 intergenic Cnx99A - chr3R 29319998 intergenic Cnx99A - chr3R 29320217 intergenic not near genes chr3R_14_29315001 chr3R_29315001 RAL-361 3827 chr3R 29332247 29332284 chr3R 29332374 29332411 4 127 8.5 12.0 10.2 0.4 164 chr3R 29332247 intergenic not near genes chr3R 29332329 intergenic not near genes chr3R 29332411 intergenic not near genes chr3R_4_29330001 chr3R_29330001 RAL-361 3828 chr3R 29334195 29334225 chr3R 29334322 29334336 11 122 17.0 16.5 16.8 0.6 141 chr3R 29334195 intergenic not near genes chr3R 29334266 intergenic not near genes chr3R 29334336 intergenic not near genes chr3R_11_29330001 chr3R_29330001 RAL-361 3829 chr3R 29336327 29336352 chr3R 29336454 29336479 7 126 20.5 24.5 22.5 0.3 152 chr3R 29336327 intergenic not near genes chr3R 29336403 intergenic not near genes chr3R 29336479 intergenic not near genes chr3R_7_29335001 chr3R_29335001 RAL-361 3830 chr3R 29355998 29356076 chr3R 29356128 29356207 26 129 0.0 7.0 3.5 5.8 209 chr3R 29355998 intergenic CR45547 - chr3R 29356102 intergenic CR45547 - chr3R 29356207 3` UTR CR45547 - chr3R_26_29355001 chr3R_29355001 RAL-361 3831 chr3R 29388988 29389048 chr3R 29389149 29389206 4 159 18.5 19.0 18.8 0.2 218 chr3R 29388988 intron Ptp99A + chr3R 29389097 intron Ptp99A + chr3R 29389206 intron Ptp99A + chr3R_4_29385001 chr3R_29385001 RAL-361 3832 chr3R 29402942 29402999 chr3R 29403087 29403144 9 145 23.0 14.0 18.5 0.5 202 chr3R 29402942 intron Ptp99A + chr3R 29403043 intron Ptp99A + chr3R 29403144 intron Ptp99A + chr3R_9_29400001 chr3R_29400001 RAL-361 3833 chr3R 29406580 29406590 chr3R 29407916 29407926 jockey 9 1336 13.5 12.0 12.8 0.7 1346 chr3R 29406580 intron Ptp99A + chr3R 29407253 intron Ptp99A + chr3R 29407926 intron Ptp99A + chr3R_9_29405001 chr3R_29405001 RAL-361 3834 chr3R 29406591 29406634 chr3R 29407911 29407965 jockey 13 1325 8.5 11.5 10.0 1.2 1374 chr3R 29406591 intron Ptp99A + chr3R 29407278 intron Ptp99A + chr3R 29407965 intron Ptp99A + chr3R_13_29405001 chr3R_29405001 RAL-361 3835 chr3R 29411999 29412034 chr3R 29412103 29412163 8 119 5.5 10.0 7.8 0.9 164 chr3R 29411999 intron Ptp99A + chr3R 29412081 intron Ptp99A + chr3R 29412163 intron Ptp99A + chr3R_8_29410001 chr3R_29410001 RAL-361 3836 chr3R 29418982 29419053 chr3R 29419151 29419170 8 156 29.0 28.0 28.5 0.3 188 chr3R 29418982 intron Ptp99A + chr3R 29419076 intron Ptp99A + chr3R 29419170 intron Ptp99A + chr3R_8_29415001 chr3R_29415001 RAL-361 3837 chr3R 29420066 29420102 chr3R 29420195 29420232 11 132 5.5 5.0 5.2 1.8 166 chr3R 29420066 intron Ptp99A + chr3R 29420149 intron Ptp99A + chr3R 29420232 intron Ptp99A + chr3R_11_29420001 chr3R_29420001 RAL-361 3838 chr3R 29429743 29429805 chr3R 29429871 29429933 23 126 13.5 14.0 13.8 1.6 190 chr3R 29429743 intron Ptp99A + chr3R 29429838 intron Ptp99A + chr3R 29429933 intron Ptp99A + chr3R_23_29425001 chr3R_29425001 RAL-361 3839 chr3R 29431403 29431425 chr3R 29431567 29431589 8 164 11.0 19.5 15.2 0.5 186 chr3R 29431403 intron Ptp99A + chr3R 29431496 intron Ptp99A + chr3R 29431589 intron Ptp99A + chr3R_8_29430001 chr3R_29430001 RAL-361 3840 chr3R 29446949 29446973 chr3R 29447086 29447110 7 137 18.0 10.5 14.2 0.5 161 chr3R 29446949 intron Ptp99A + chr3R 29447030 intron Ptp99A + chr3R 29447110 intron Ptp99A + chr3R_7_29445001 chr3R_29445001 RAL-361 3841 chr3R 29446975 29447020 chr3R 29447080 29447157 22 133 9.5 10.0 9.8 2.0 182 chr3R 29446975 intron Ptp99A + chr3R 29447066 intron Ptp99A + chr3R 29447157 intron Ptp99A + chr3R_22_29445001 chr3R_29445001 RAL-361 3842 chr3R 29447776 29447790 chr3R 29447933 29447947 5 157 25.0 16.0 20.5 0.2 171 chr3R 29447776 intron Ptp99A + chr3R 29447862 intron Ptp99A + chr3R 29447947 intron Ptp99A + chr3R_5_29445001 chr3R_29445001 RAL-361 3843 chr3R 29447793 29447845 chr3R 29447930 29448002 13 153 16.5 16.0 16.2 0.8 209 chr3R 29447793 intron Ptp99A + chr3R 29447898 intron Ptp99A + chr3R 29448002 intron Ptp99A + chr3R_13_29445001 chr3R_29445001 RAL-361 3844 chr3R 29449318 29449380 chr3R 29449446 29449508 7 128 30.5 26.5 28.5 0.2 190 chr3R 29449318 intron Ptp99A + chr3R 29449413 intron Ptp99A + chr3R 29449508 intron Ptp99A + chr3R_7_29445001 chr3R_29445001 RAL-361 3845 chr3R 29471957 29472033 chr3R 29472100 29472176 25 140 5.5 4.0 4.8 4.3 219 chr3R 29471957 intron Ptp99A + chr3R 29472066 intron Ptp99A + chr3R 29472176 intron Ptp99A + chr3R_25_29470001 chr3R_29470001 RAL-361 3846 chr3R 29474391 29474457 chr3R 29474528 29474594 25 137 20.5 25.5 23.0 1.0 203 chr3R 29474391 intron Ptp99A + chr3R 29474492 intron Ptp99A + chr3R 29474594 intron Ptp99A + chr3R_25_29470001 chr3R_29470001 RAL-361 3847 chr3R 29505850 29505919 chr3R 29505976 29506046 24 126 7.0 6.0 6.5 3.2 196 chr3R 29505850 intergenic not near genes chr3R 29505948 intergenic not near genes chr3R 29506046 intergenic not near genes chr3R_24_29505001 chr3R_29505001 RAL-361 3848 chr3R 29508834 29508841 chr3R 29509006 29509013 4 172 0.0 10.0 5.0 0.7 179 chr3R 29508834 intergenic not near genes chr3R 29508924 intergenic not near genes chr3R 29509013 intergenic not near genes chr3R_4_29505001 chr3R_29505001 RAL-361 3849 chr3R 29526193 29526240 chr3R 29526330 29526377 10 137 20.0 14.5 17.2 0.5 184 chr3R 29526193 intergenic not near genes chr3R 29526285 intergenic not near genes chr3R 29526377 intergenic not near genes chr3R_10_29525001 chr3R_29525001 RAL-361 3850 chr3R 29539383 29539443 chr3R 29539509 29539526 15 119 15.5 7.5 11.5 1.2 143 chr3R 29539383 intergenic not near genes chr3R 29539454 intergenic not near genes chr3R 29539526 intergenic not near genes chr3R_15_29535001 chr3R_29535001 RAL-361 3851 chr3R 29546705 29546779 chr3R 29546831 29546905 25 121 14.5 17.5 16.0 1.5 200 chr3R 29546705 intergenic not near genes chr3R 29546805 intergenic not near genes chr3R 29546905 intergenic not near genes chr3R_25_29545001 chr3R_29545001 RAL-361 3852 chr3R 29565724 29565751 chr3R 29565852 29565878 5 128 27.5 27.5 27.5 0.2 154 chr3R 29565724 intergenic Dr + chr3R 29565801 intergenic not near genes chr3R 29565878 intergenic not near genes chr3R_5_29565001 chr3R_29565001 RAL-361 3853 chr3R 29576723 29577005 chr3R 29576874 29577136 13 131 23.5 17.0 20.2 0.6 413 chr3R 29576723 intergenic not near genes chr3R 29576930 intergenic not near genes chr3R 29577136 intergenic not near genes chr3R_13_29575001 chr3R_29575001 RAL-361 3854 chr3R 29581508 29581541 chr3R 29581639 29581672 8 131 9.0 3.5 6.2 1.1 164 chr3R 29581508 intergenic not near genes chr3R 29581590 intergenic not near genes chr3R 29581672 intergenic not near genes chr3R_8_29580001 chr3R_29580001 RAL-361 3855 chr3R 29590034 29590109 chr3R 29590160 29590235 12 119 24.0 25.0 24.5 0.5 201 chr3R 29590034 intergenic CG31041 -,CG11470 - chr3R 29590134 3` UTR CG31041 - chr3R 29590235 exon CG31041 - chr3R_12_29590001 chr3R_29590001 RAL-361 3856 chr3R 29590329 29590400 chr3R 29590472 29590543 25 138 17.0 17.5 17.2 1.4 214 chr3R 29590329 exon CG31041 - chr3R 29590436 intron CG31041 - chr3R 29590543 exon CG31041 - chr3R_25_29590001 chr3R_29590001 RAL-361 3857 chr3R 29609125 29609179 chr3R 29609264 29609318 31 138 10.0 3.5 6.8 4.0 193 chr3R 29609125 intron alph + chr3R 29609222 intron alph + chr3R 29609318 intron alph + chr3R_31_29605001 chr3R_29605001 RAL-361 3858 chr3R 29648960 29649012 chr3R 29649100 29649152 21 140 9.5 15.5 12.5 1.6 192 chr3R 29648960 intron Dop1R2 - chr3R 29649056 intron Dop1R2 - chr3R 29649152 intron Dop1R2 - chr3R_21_29645001 chr3R_29645001 RAL-361 3859 chr3R 29655605 29655661 chr3R 29655734 29655790 11 129 33.5 27.5 30.5 0.3 185 chr3R 29655605 intron Dop1R2 - chr3R 29655698 intron Dop1R2 - chr3R 29655790 intron Dop1R2 - chr3R_11_29655001 chr3R_29655001 RAL-361 3860 chr3R 29656359 29656398 chr3R 29656488 29656527 12 127 32.5 32.0 32.2 0.4 168 chr3R 29656359 intron Dop1R2 - chr3R 29656443 intron Dop1R2 - chr3R 29656527 intron Dop1R2 - chr3R_12_29655001 chr3R_29655001 RAL-361 3861 chr3R 29699525 29699588 chr3R 29702648 29702724 8 3134 28.0 34.0 31.0 0.2 3199 chr3R 29699525 intergenic not near genes chr3R 29701124 intergenic not near genes chr3R 29702724 intergenic not near genes chr3R_8_29700001 chr3R_29700001 RAL-361 3862 chr3R 29699325 29699384 chr3R 29702845 29702904 15 3522 21.0 50.5 35.8 0.4 3579 chr3R 29699325 intergenic not near genes chr3R 29701114 intergenic not near genes chr3R 29702904 intergenic not near genes chr3R_15_29700001 chr3R_29700001 RAL-361 3863 chr3R 29738218 29738291 chr3R 29739735 29739808 hobo 32 1517 9.5 9.5 9.5 3.0 1590 chr3R 29738218 intergenic CG1969 +,CG7598 + chr3R 29739013 intron CG1969 + chr3R 29739808 5` UTR CG1969 + chr3R_32_29735001 chr3R_29735001 RAL-361 3864 chr3R 29754915 29754983 chr3R 29755043 29755110 5 128 28.0 25.0 26.5 0.2 195 chr3R 29754915 intergenic CR44953 -,yata + chr3R 29755012 intergenic CR44953 -,yata + chr3R 29755110 intergenic CR44953 - chr3R_5_29755001 chr3R_29755001 RAL-361 3865 chr3R 29758904 29758963 chr3R 29759032 29759091 9 128 41.0 44.0 42.5 0.2 187 chr3R 29758904 3` UTR CR44953 - chr3R 29758998 3` UTR CR44953 - chr3R 29759091 intergenic CR44953 - chr3R_9_29755001 chr3R_29755001 RAL-361 3866 chr3R 29760330 29760383 chr3R 29761581 29761634 pogo 11 1251 33.0 26.5 29.8 0.4 1304 chr3R 29760330 intergenic not near genes chr3R 29760982 intergenic not near genes chr3R 29761634 intergenic not near genes chr3R_11_29760001 chr3R_29760001 RAL-361 3867 chr3R 29831765 29831838 chr3R 29831900 29831973 18 131 14.5 15.5 15.0 1.1 208 chr3R 29831765 exon Atg16 - chr3R 29831869 intron Atg16 - chr3R 29831973 exon Atg16 - chr3R_18_29830001 chr3R_29830001 RAL-361 3868 chr3R 29881978 29881989 chr3R 29891185 29891196 roo 5 9207 27.0 11.5 19.2 0.2 9218 chr3R 29881978 intron CG31038 + chr3R 29886587 intron CG31038 + chr3R 29891196 intron CG31038 + chr3R_5_29885001 chr3R_29885001 RAL-361 3869 chr3R 29881990 29882044 chr3R 29891181 29891251 roo 29 9205 15.5 11.0 13.2 2.0 9261 chr3R 29881990 intron CG31038 + chr3R 29886620 intron CG31038 + chr3R 29891251 intron CG31038 + chr3R_29_29885001 chr3R_29885001 RAL-361 3870 chr3R 29959227 29959301 chr3R 29959355 29959430 22 128 12.5 12.5 12.5 1.6 203 chr3R 29959227 exon TkR99D - chr3R 29959328 intron TkR99D - chr3R 29959430 intron TkR99D - chr3R_22_29955001 chr3R_29955001 RAL-361 3871 chr3R 29966011 29966073 chr3R 29966141 29966203 13 124 5.5 7.5 6.5 1.7 192 chr3R 29966011 intron TkR99D - chr3R 29966107 intron TkR99D - chr3R 29966203 intron TkR99D - chr3R_13_29965001 chr3R_29965001 RAL-361 3872 chr3R 29968731 29968788 chr3R 29968965 29969022 5 233 21.0 18.0 19.5 0.2 291 chr3R 29968731 intron TkR99D - chr3R 29968876 intron TkR99D - chr3R 29969022 5` UTR TkR99D - chr3R_5_29965001 chr3R_29965001 RAL-361 3873 chr3R 29979936 29980010 chr3R 29980068 29980092 5 109 20.5 24.5 22.5 0.2 156 chr3R 29979936 intergenic not near genes chr3R 29980014 intergenic not near genes chr3R 29980092 intergenic not near genes chr3R_5_29980001 chr3R_29980001 RAL-361 3874 chr3R 30025229 30025307 chr3R 30025355 30025433 5 126 10.5 16.0 13.2 0.4 204 chr3R 30025229 intron Axn + chr3R 30025331 intron Axn + chr3R 30025433 intron Axn + chr3R_5_30025001 chr3R_30025001 RAL-361 3875 chr3R 30032118 30032193 chr3R 30032247 30032340 6 132 6.0 6.5 6.2 0.8 222 chr3R 30032118 intron Axn + chr3R 30032229 intron Axn + chr3R 30032340 intron Axn + chr3R_6_30030001 chr3R_30030001 RAL-361 3876 chr3R 30046289 30046353 chr3R 30046462 30046526 19 171 21.5 23.0 22.2 0.8 237 chr3R 30046289 intergenic RpL32 -,CG7943 + chr3R 30046408 intergenic CG7943 +,RpL32 - chr3R 30046526 5` UTR CG7943 + chr3R_19_30045001 chr3R_30045001 RAL-361 3877 chr3R 30061812 30061865 chr3R 30061940 30061993 10 127 15.0 11.0 13.0 0.7 181 chr3R 30061812 intron sima + chr3R 30061902 intron sima + chr3R 30061993 intron sima + chr3R_10_30060001 chr3R_30060001 RAL-361 3878 chr3R 30065287 30065298 chr3R 30065438 30065449 5 151 15.5 4.5 10.0 0.5 162 chr3R 30065287 intron sima + chr3R 30065368 intron sima + chr3R 30065449 intron sima + chr3R_5_30065001 chr3R_30065001 RAL-361 3879 chr3R 30075516 30075582 chr3R 30075655 30075721 10 139 15.0 17.0 16.0 0.6 205 chr3R 30075516 intron sima + chr3R 30075618 intron sima + chr3R 30075721 intron sima + chr3R_10_30075001 chr3R_30075001 RAL-361 3880 chr3R 30081810 30081862 chr3R 30081938 30081990 11 128 8.0 6.0 7.0 1.4 180 chr3R 30081810 intron sima + chr3R 30081900 intron sima + chr3R 30081990 intron sima + chr3R_11_30080001 chr3R_30080001 RAL-361 3881 chr3R 30082943 30083014 chr3R 30083069 30083140 13 119 15.5 6.0 10.8 1.1 197 chr3R 30082943 intron sima + chr3R 30083042 intron sima + chr3R 30083140 intron sima + chr3R_13_30080001 chr3R_30080001 RAL-361 3882 chr3R 30084810 30084811 chr3R 30086323 30086330 hobo 4 1516 9.5 10.5 10.0 0.4 1520 chr3R 30084810 intron sima + chr3R 30085570 intron sima + chr3R 30086330 intron sima + chr3R_4_30085001 chr3R_30085001 RAL-361 3883 chr3R 30084815 30084877 chr3R 30086316 30086382 hobo 11 1513 1.5 9.0 5.2 1.8 1567 chr3R 30084815 intron sima + chr3R 30085598 intron sima + chr3R 30086382 intron sima + chr3R_11_30085001 chr3R_30085001 RAL-361 3884 chr3R 30124913 30124978 chr3R 30125039 30125104 12 123 28.0 33.0 30.5 0.4 191 chr3R 30124913 intergenic CG45073 - chr3R 30125008 intergenic CG45073 - chr3R 30125104 intergenic CG45073 - chr3R_12_30125001 chr3R_30125001 RAL-361 3885 chr3R 30136914 30136974 chr3R 30137043 30137103 11 129 25.0 29.0 27.0 0.4 189 chr3R 30136914 exon AdoR - chr3R 30137008 intron AdoR - chr3R 30137103 exon AdoR - chr3R_11_30135001 chr3R_30135001 RAL-361 3886 chr3R 30170644 30170673 chr3R 30170770 30170799 9 126 21.5 20.5 21.0 0.4 155 chr3R 30170644 exon CG31028 - chr3R 30170722 intron CG31028 - chr3R 30170799 intron CG31028 - chr3R_9_30170001 chr3R_30170001 RAL-361 3887 chr3R 30203347 30203381 chr3R 30203476 30203505 12 129 20.0 18.5 19.2 0.6 158 chr3R 30203347 intergenic CG9743 - chr3R 30203426 intergenic CG9743 - chr3R 30203505 intergenic not near genes chr3R_12_30200001 chr3R_30200001 RAL-361 3888 chr3R 30210516 30210674 chr3R 30210662 30210804 11 139 1.5 0.0 0.8 6.1 288 chr3R 30210516 intergenic Anp +,CecA1 + chr3R 30210660 intergenic CecA1 +,Anp + chr3R 30210804 intergenic CecA1 +,Anp + chr3R_11_30210001 chr3R_30210001 RAL-361 3889 chr3R 30238721 30238796 chr3R 30239935 30240021 1360 28 1214 5.5 6.0 5.8 4.1 1300 chr3R 30238721 intergenic not near genes chr3R 30239371 intergenic not near genes chr3R 30240021 intergenic not near genes chr3R_28_30235001 chr3R_30235001 RAL-361 3890 chr3R 30260319 30260390 chr3R 30260445 30260509 23 126 15.5 13.5 14.5 1.5 190 chr3R 30260319 intergenic not near genes chr3R 30260414 intergenic not near genes chr3R 30260509 intergenic not near genes chr3R_23_30260001 chr3R_30260001 RAL-361 3891 chr3R 30267932 30267998 chr3R 30268068 30268134 5 136 10.5 12.0 11.2 0.4 202 chr3R 30267932 intergenic not near genes chr3R 30268033 intergenic not near genes chr3R 30268134 intergenic not near genes chr3R_5_30265001 chr3R_30265001 RAL-361 3892 chr3R 30268368 30268444 chr3R 30268499 30268567 9 116 20.5 20.0 20.2 0.4 199 chr3R 30268368 intergenic not near genes chr3R 30268468 intergenic not near genes chr3R 30268567 intergenic not near genes chr3R_9_30265001 chr3R_30265001 RAL-361 3893 chr3R 30272472 30272542 chr3R 30272611 30272681 25 139 14.0 17.0 15.5 1.5 209 chr3R 30272472 intergenic not near genes chr3R 30272576 intergenic not near genes chr3R 30272681 intergenic not near genes chr3R_25_30270001 chr3R_30270001 RAL-361 3894 chr3R 30287722 30287777 chr3R 30287855 30287910 13 131 20.5 13.0 16.8 0.7 188 chr3R 30287722 intron hdc + chr3R 30287816 intron hdc + chr3R 30287910 intron hdc + chr3R_13_30285001 chr3R_30285001 RAL-361 3895 chr3R 30298137 30298196 chr3R 30298291 30298353 7 156 28.0 23.0 25.5 0.3 216 chr3R 30298137 intron hdc + chr3R 30298245 intron hdc + chr3R 30298353 intron hdc + chr3R_7_30295001 chr3R_30295001 RAL-361 3896 chr3R 30310846 30310921 chr3R 30310979 30311054 13 133 21.0 21.0 21.0 0.6 208 chr3R 30310846 intron hdc + chr3R 30310950 intron hdc + chr3R 30311054 intron hdc + chr3R_13_30310001 chr3R_30310001 RAL-361 3897 chr3R 30315581 30315617 chr3R 30315714 30315750 8 133 21.0 17.5 19.2 0.4 169 chr3R 30315581 intron hdc + chr3R 30315666 intron hdc + chr3R 30315750 intron hdc + chr3R_8_30315001 chr3R_30315001 RAL-361 3898 chr3R 30317282 30317347 chr3R 30324925 30324989 roo 12 7640 1.5 3.0 2.2 3.8 7707 chr3R 30317282 intron hdc + chr3R 30321136 intron hdc + chr3R 30324989 intron hdc + chr3R_12_30320001 chr3R_30320001 RAL-361 3899 chr3R 30363079 30363145 chr3R 30363522 30363578 18 440 15.0 14.0 14.5 1.2 499 chr3R 30363079 3` UTR hdc + chr3R 30363328 3` UTR hdc + chr3R 30363578 3` UTR hdc + chr3R_18_30360001 chr3R_30360001 RAL-361 3900 chr3R 30375499 30375572 chr3R 30383172 30383245 412 17 7673 6.5 9.5 8.0 1.9 7746 chr3R 30375499 intergenic not near genes chr3R 30379372 intergenic not near genes chr3R 30383245 intergenic not near genes chr3R_17_30375001 chr3R_30375001 RAL-361 3901 chr3R 30396166 30396238 chr3R 30404482 30404554 roo 27 8316 10.0 8.5 9.2 2.6 8388 chr3R 30396166 intergenic not near genes chr3R 30400360 intergenic not near genes chr3R 30404554 5` UTR CR45570 + chr3R_27_30400001 chr3R_30400001 RAL-361 3902 chr3R 30406976 30407022 chr3R 30407101 30407153 11 129 22.0 31.0 26.5 0.4 177 chr3R 30406976 intergenic not near genes chr3R 30407064 intergenic not near genes chr3R 30407153 intergenic not near genes chr3R_11_30405001 chr3R_30405001 RAL-361 3903 chr3R 30438385 30438462 chr3R 30438512 30438589 21 126 14.5 19.5 17.0 1.2 204 chr3R 30438385 intron CG15537 - chr3R 30438487 intron CG15537 - chr3R 30438589 intron CG15537 - chr3R_21_30435001 chr3R_30435001 RAL-361 3904 chr3R 30448152 30448221 chr3R 30448281 30448348 20 129 24.0 22.5 23.2 0.8 196 chr3R 30448152 intron aralar1 - chr3R 30448250 intron aralar1 - chr3R 30448348 exon aralar1 - chr3R_20_30445001 chr3R_30445001 RAL-361 3905 chr3R 30451852 30451915 chr3R 30452090 30452153 18 238 18.0 11.5 14.8 1.1 301 chr3R 30451852 intron aralar1 - chr3R 30452002 intron aralar1 - chr3R 30452153 intron aralar1 - chr3R_18_30450001 chr3R_30450001 RAL-361 3906 chr3R 30456357 30456420 chr3R 30456488 30456551 24 130 24.5 22.5 23.5 1.0 194 chr3R 30456357 intergenic CG2224 -,aralar1 - chr3R 30456454 3` UTR CG2224 - chr3R 30456551 3` UTR CG2224 - chr3R_24_30455001 chr3R_30455001 RAL-361 3907 chr3R 30480438 30480507 chr3R 30482945 30483025 jockey 29 2513 7.5 3.0 5.2 4.7 2587 chr3R 30480438 intron PH4alphaEFB + chr3R 30481732 intron PH4alphaEFB + chr3R 30483025 intron PH4alphaEFB + chr3R_29_30480001 chr3R_30480001 RAL-361 3908 chr3R 30485005 30485070 chr3R 30485131 30485196 19 125 14.0 15.0 14.5 1.2 191 chr3R 30485005 intron PH4alphaEFB + chr3R 30485100 intron PH4alphaEFB + chr3R 30485196 intron PH4alphaEFB + chr3R_19_30485001 chr3R_30485001 RAL-361 3909 chr3R 30488076 30488090 chr3R 30488205 30488219 5 129 28.0 14.0 21.0 0.2 143 chr3R 30488076 intergenic Jon99Fii - chr3R 30488148 intergenic Jon99Fii - chr3R 30488219 intergenic Jon99Fii - chr3R_5_30485001 chr3R_30485001 RAL-361 3910 chr3R 30498343 30498427 chr3R 30498605 30498677 17 252 13.0 23.0 18.0 0.9 334 chr3R 30498343 intron PH4alphaNE1 - chr3R 30498510 intron PH4alphaNE1 - chr3R 30498677 intron PH4alphaNE1 - chr3R_17_30495001 chr3R_30495001 RAL-361 3911 chr3R 30548969 30549036 chr3R 30549111 30549178 9 142 23.0 21.0 22.0 0.4 209 chr3R 30548969 intron tmod + chr3R 30549074 intron tmod + chr3R 30549178 intron tmod + chr3R_9_30545001 chr3R_30545001 RAL-361 3912 chr3R 30565406 30565452 chr3R 30565573 30565619 6 167 26.5 27.0 26.8 0.2 213 chr3R 30565406 intron tmod + chr3R 30565512 intron tmod + chr3R 30565619 intron tmod + chr3R_6_30565001 chr3R_30565001 RAL-361 3913 chr3R 30571654 30571725 chr3R 30571784 30571855 29 129 5.0 7.5 6.2 4.0 201 chr3R 30571654 intron tmod + chr3R 30571754 intron tmod + chr3R 30571855 exon tmod + chr3R_29_30570001 chr3R_30570001 RAL-361 3914 chr3R 30577565 30577601 chr3R 30577857 30577893 6 292 18.5 22.0 20.2 0.3 328 chr3R 30577565 intron tmod + chr3R 30577729 intron tmod + chr3R 30577893 intron tmod + chr3R_6_30575001 chr3R_30575001 RAL-361 3915 chr3R 30627564 30627630 chr3R 30627692 30627760 27 120 9.5 8.5 9.0 2.7 196 chr3R 30627564 3` UTR CG2267 - chr3R 30627662 exon CG2267 - chr3R 30627760 exon CG2267 - chr3R_27_30625001 chr3R_30625001 RAL-361 3916 chr3R 30641658 30641713 chr3R 30641787 30641842 12 123 13.0 9.5 11.2 1.0 184 chr3R 30641658 intergenic not near genes chr3R 30641750 intergenic not near genes chr3R 30641842 intergenic not near genes chr3R_12_30640001 chr3R_30640001 RAL-361 3917 chr3R 30649818 30649871 chr3R 30649949 30650002 4 131 27.5 25.0 26.2 0.1 184 chr3R 30649818 3` UTR CG34432 + chr3R 30649910 intergenic CG34432 +,CG34433 + chr3R 30650002 exon CG34433 + chr3R_4_30645001 chr3R_30645001 RAL-361 3918 chr3R 30677861 30677871 chr3R 30677987 30677997 4 126 4.5 8.5 6.5 0.5 136 chr3R 30677861 intergenic not near genes chr3R 30677929 intergenic not near genes chr3R 30677997 intergenic not near genes chr3R_4_30675001 chr3R_30675001 RAL-361 3919 chr3R 30679469 30679549 chr3R 30686988 30687068 blood 27 7516 6.0 8.5 7.2 3.3 7599 chr3R 30679469 intergenic not near genes chr3R 30683268 intergenic not near genes chr3R 30687068 intergenic not near genes chr3R_27_30680001 chr3R_30680001 RAL-361 3920 chr3R 30690118 30690186 chr3R 30690252 30690320 8 131 27.0 26.5 26.8 0.3 202 chr3R 30690118 intergenic not near genes chr3R 30690219 intergenic Spn100A + chr3R 30690320 intergenic Spn100A + chr3R_8_30690001 chr3R_30690001 RAL-361 3921 chr3R 30762601 30762655 chr3R 30762766 30762819 15 165 19.5 16.5 18.0 0.8 218 chr3R 30762601 intergenic not near genes chr3R 30762710 intergenic not near genes chr3R 30762819 intergenic not near genes chr3R_15_30760001 chr3R_30760001 RAL-361 3922 chr3R 30818777 30818834 chr3R 30820392 30820449 1360 23 1615 26.5 22.5 24.5 0.9 1672 chr3R 30818777 intron cindr + chr3R 30819613 intron cindr + chr3R 30820449 intron cindr + chr3R_23_30815001 chr3R_30815001 RAL-361 3923 chr3R 30821355 30821419 chr3R 30821493 30821549 10 136 20.5 17.5 19.0 0.5 194 chr3R 30821355 intron cindr + chr3R 30821452 intron cindr + chr3R 30821549 intron cindr + chr3R_10_30820001 chr3R_30820001 RAL-361 3924 chr3R 30823388 30823416 chr3R 30823520 30823562 7 141 15.0 23.5 19.2 0.3 174 chr3R 30823388 intron cindr + chr3R 30823475 intron cindr + chr3R 30823562 intron cindr + chr3R_7_30820001 chr3R_30820001 RAL-361 3925 chr3R 30831664 30831695 chr3R 30831790 30831821 10 126 20.5 28.5 24.5 0.4 157 chr3R 30831664 intron CG15544 + chr3R 30831742 intron CG15544 + chr3R 30831821 intron CG15544 + chr3R_10_30830001 chr3R_30830001 RAL-361 3926 chr3R 30850192 30850265 chr3R 30850334 30850407 34 141 6.0 7.5 6.8 4.4 215 chr3R 30850192 intergenic not near genes chr3R 30850300 intergenic not near genes chr3R 30850407 intergenic not near genes chr3R_34_30850001 chr3R_30850001 RAL-361 3927 chr3R 30888924 30888996 chr3R 30893403 30893474 33 4478 59.0 69.0 64.0 0.5 4550 chr3R 30888924 exon Sap-r - chr3R 30891199 intergenic not near genes chr3R 30893474 intergenic not near genes chr3R_33_30890001 chr3R_30890001 RAL-361 3928 chr3R 30900481 30900551 chr3R 30900611 30900681 31 129 9.5 9.0 9.2 3.0 200 chr3R 30900481 exon Cyp4c3 + chr3R 30900581 3` UTR Cyp4c3 + chr3R 30900681 3` UTR Cyp4c3 + chr3R_31_30900001 chr3R_30900001 RAL-361 3929 chr3R 30948029 30948100 chr3R 30948270 30948341 27 237 7.0 9.5 8.2 2.9 312 chr3R 30948029 intergenic not near genes chr3R 30948185 intergenic not near genes chr3R 30948341 intergenic not near genes chr3R_27_30945001 chr3R_30945001 RAL-361 3930 chr3R 30965815 30965881 chr3R 30965945 30966017 18 131 5.0 10.5 7.8 2.0 202 chr3R 30965815 intergenic not near genes chr3R 30965916 intergenic not near genes chr3R 30966017 intergenic not near genes chr3R_18_30965001 chr3R_30965001 RAL-361 3931 chr3R 30980805 30980818 chr3R 30980931 30980944 7 126 8.5 16.0 12.2 0.5 139 chr3R 30980805 intron 5-HT7 - chr3R 30980874 intron 5-HT7 - chr3R 30980944 intron 5-HT7 - chr3R_7_30980001 chr3R_30980001 RAL-361 3932 chr3R 31026444 31026494 chr3R 31026575 31026625 12 128 11.5 11.0 11.2 1.0 181 chr3R 31026444 intergenic not near genes chr3R 31026534 intergenic not near genes chr3R 31026625 intergenic not near genes chr3R_12_31025001 chr3R_31025001 RAL-361 3933 chr3R 31026495 31026514 chr3R 31026573 31026645 5 108 8.5 11.0 9.8 0.5 150 chr3R 31026495 intergenic not near genes chr3R 31026570 intergenic not near genes chr3R 31026645 intergenic not near genes chr3R_5_31025001 chr3R_31025001 RAL-361 3934 chr3R 31042066 31042140 chr3R 31042203 31042277 23 137 13.0 9.0 11.0 1.9 211 chr3R 31042066 exon CanA1 + chr3R 31042172 intron CanA1 + chr3R 31042277 exon CanA1 + chr3R_23_31040001 chr3R_31040001 RAL-361 3935 chr3R 31042954 31042966 chr3R 31043081 31043086 4 125 20.5 18.0 19.2 0.2 132 chr3R 31042954 intron CanA1 + chr3R 31043020 intron CanA1 + chr3R 31043086 intron CanA1 + chr3R_4_31040001 chr3R_31040001 RAL-361 3936 chr3R 31042972 31043009 chr3R 31043073 31043126 12 118 17.5 15.5 16.5 0.7 154 chr3R 31042972 intron CanA1 + chr3R 31043049 intron CanA1 + chr3R 31043126 exon CanA1 + chr3R_12_31040001 chr3R_31040001 RAL-361 3937 chr3R 31062602 31062672 chr3R 31062733 31062803 16 130 22.0 19.0 20.5 0.7 201 chr3R 31062602 intergenic not near genes chr3R 31062702 intergenic not near genes chr3R 31062803 intergenic not near genes chr3R_16_31060001 chr3R_31060001 RAL-361 3938 chr3R 31069598 31069665 chr3R 31069743 31069804 28 143 23.5 21.0 22.2 1.2 206 chr3R 31069598 intron Sox100B + chr3R 31069701 intron Sox100B + chr3R 31069804 intron Sox100B + chr3R_28_31065001 chr3R_31065001 RAL-361 3939 chr3R 31074186 31074262 chr3R 31081834 31081917 springer 17 7648 9.0 2.0 5.5 2.6 7731 chr3R 31074186 intron Sox100B + chr3R 31078052 intron Sox100B + chr3R 31081917 exon Sox100B + chr3R_17_31075001 chr3R_31075001 RAL-361 3940 chr3R 31087057 31087131 chr3R 31087619 31087661 19 557 14.0 18.5 16.2 1.1 604 chr3R 31087057 intergenic not near genes chr3R 31087359 intergenic not near genes chr3R 31087661 intergenic not near genes chr3R_19_31085001 chr3R_31085001 RAL-361 3941 chr3R 31105192 31105245 chr3R 31105499 31105552 6 307 31.0 26.0 28.5 0.2 360 chr3R 31105192 intergenic not near genes chr3R 31105372 intergenic not near genes chr3R 31105552 intergenic not near genes chr3R_6_31105001 chr3R_31105001 RAL-361 3942 chr3R 31134984 31135031 chr3R 31135168 31135215 7 184 28.5 28.5 28.5 0.2 231 chr3R 31134984 intron Gycbeta100B + chr3R 31135100 intron Gycbeta100B + chr3R 31135215 intron Gycbeta100B + chr3R_7_31135001 chr3R_31135001 RAL-361 3943 chr3R 31146706 31146765 chr3R 31146834 31146893 12 128 27.5 29.0 28.2 0.4 187 chr3R 31146706 intron Gycbeta100B + chr3R 31146800 intron Gycbeta100B + chr3R 31146893 intron Gycbeta100B + chr3R_12_31145001 chr3R_31145001 RAL-361 3944 chr3R 31149342 31149416 chr3R 31149474 31149548 4 132 28.0 27.0 27.5 0.1 206 chr3R 31149342 intron Gycbeta100B + chr3R 31149445 intron Gycbeta100B + chr3R 31149548 intron Gycbeta100B + chr3R_4_31145001 chr3R_31145001 RAL-361 3945 chr3R 31156297 31156307 chr3R 31156477 31156487 5 180 18.0 17.0 17.5 0.3 190 chr3R 31156297 intron Gycbeta100B + chr3R 31156392 intron Gycbeta100B + chr3R 31156487 intron Gycbeta100B + chr3R_5_31155001 chr3R_31155001 RAL-361 3946 chr3R 31227674 31227734 chr3R 31230199 31230259 11 2527 46.0 46.0 46.0 0.2 2585 chr3R 31227674 intron CG12054 + chr3R 31228966 exon CG12054 + chr3R 31230259 3` UTR CG12054 + chr3R_11_31225001 chr3R_31225001 RAL-361 3947 chr3R 31270744 31270855 chr3R 31270901 31270987 6 149 16.0 11.0 13.5 0.4 243 chr3R 31270744 intergenic not near genes chr3R 31270866 intergenic not near genes chr3R 31270987 intergenic not near genes chr3R_6_31270001 chr3R_31270001 RAL-361 3948 chr3R 31279330 31279349 chr3R 31285571 31285590 diver 5 6241 25.0 7.5 16.2 0.3 6260 chr3R 31279330 intergenic not near genes chr3R 31282460 intergenic not near genes chr3R 31285590 intergenic not near genes chr3R_5_31280001 chr3R_31280001 RAL-361 3949 chr3R 31279355 31279407 chr3R 31285570 31285618 diver 19 6233 11.5 7.5 9.5 1.8 6263 chr3R 31279355 intergenic not near genes chr3R 31282486 intergenic not near genes chr3R 31285618 intergenic not near genes chr3R_19_31280001 chr3R_31280001 RAL-361 3950 chr3R 31301137 31301204 chr3R 31301293 31301358 13 151 16.5 16.0 16.2 0.8 221 chr3R 31301137 intergenic not near genes chr3R 31301248 intergenic not near genes chr3R 31301358 intergenic not near genes chr3R_13_31300001 chr3R_31300001 RAL-361 3951 chr3R 31330393 31330410 chr3R 31335645 31335660 copia 5 5251 16.0 9.0 12.5 0.4 5267 chr3R 31330393 intron CG34347 + chr3R 31333026 intron CG34347 + chr3R 31335660 intron CG34347 + chr3R_5_31330001 chr3R_31330001 RAL-361 3952 chr3R 31370657 31370720 chr3R 31370802 31370865 21 145 9.5 9.5 9.5 2.0 208 chr3R 31370657 3` UTR CG34347 + chr3R 31370761 3` UTR CG34347 + chr3R 31370865 3` UTR CG34347 + chr3R_21_31370001 chr3R_31370001 RAL-361 3953 chr3R 31412666 31412736 chr3R 31412809 31412879 27 142 7.5 8.5 8.0 3.0 213 chr3R 31412666 intron Gprk2 + chr3R 31412772 intron Gprk2 + chr3R 31412879 intron Gprk2 + chr3R_27_31410001 chr3R_31410001 RAL-361 3954 chr3R 31413047 31413094 chr3R 31418297 31418318 copia 15 5245 9.0 0.5 4.8 2.6 5271 chr3R 31413047 intron Gprk2 + chr3R 31415682 intron Gprk2 + chr3R 31418318 intron Gprk2 + chr3R_15_31415001 chr3R_31415001 RAL-361 3955 chr3R 31426840 31426899 chr3R 31426982 31427041 24 142 9.0 9.5 9.2 2.4 201 chr3R 31426840 intron Gprk2 + chr3R 31426940 intron Gprk2 + chr3R 31427041 intron Gprk2 + chr3R_24_31425001 chr3R_31425001 RAL-361 3956 chr3R 31430675 31430712 chr3R 31430813 31430850 10 136 13.0 5.5 9.2 1.0 175 chr3R 31430675 intron Gprk2 + chr3R 31430762 intron Gprk2 + chr3R 31430850 intron Gprk2 + chr3R_10_31430001 chr3R_31430001 RAL-361 3957 chr3R 31430714 31430746 chr3R 31430808 31430884 21 124 7.0 5.5 6.2 2.9 170 chr3R 31430714 intron Gprk2 + chr3R 31430799 intron Gprk2 + chr3R 31430884 intron Gprk2 + chr3R_21_31430001 chr3R_31430001 RAL-361 3958 chr3R 31435313 31435388 chr3R 31435515 31435590 34 202 8.5 7.5 8.0 3.8 277 chr3R 31435313 intron Gprk2 + chr3R 31435452 intron Gprk2 + chr3R 31435590 intron Gprk2 + chr3R_34_31435001 chr3R_31435001 RAL-361 3959 chr3R 31437591 31437636 chr3R 31437835 31437878 8 242 7.0 7.5 7.2 1.0 287 chr3R 31437591 intron Gprk2 + chr3R 31437734 intron Gprk2 + chr3R 31437878 intron Gprk2 + chr3R_8_31435001 chr3R_31435001 RAL-361 3960 chr3R 31530780 31530843 chr3R 31531147 31531179 32 354 7.0 9.0 8.0 3.6 399 chr3R 31530780 intergenic not near genes chr3R 31530980 intergenic not near genes chr3R 31531179 intergenic not near genes chr3R_32_31530001 chr3R_31530001 RAL-361 3961 chr3R 31539294 31539355 chr3R 31539429 31539473 21 134 9.0 9.0 9.0 2.1 179 chr3R 31539294 intergenic not near genes chr3R 31539384 intergenic not near genes chr3R 31539473 intergenic not near genes chr3R_21_31535001 chr3R_31535001 RAL-361 3962 chr3R 31539812 31539879 chr3R 31539947 31540014 27 134 6.5 4.5 5.5 4.2 202 chr3R 31539812 intergenic not near genes chr3R 31539913 intergenic not near genes chr3R 31540014 intergenic not near genes chr3R_27_31535001 chr3R_31535001 RAL-361 3963 chr3R 31548858 31548886 chr3R 31548993 31549021 10 135 11.5 17.0 14.2 0.7 163 chr3R 31548858 intron nyo + chr3R 31548940 intron nyo + chr3R 31549021 intron nyo + chr3R_10_31545001 chr3R_31545001 RAL-361 3964 chr3R 31627660 31627680 chr3R 31627787 31627810 11 129 0.5 14.0 7.2 1.3 150 chr3R 31627660 intron kek6 + chr3R 31627735 intron kek6 + chr3R 31627810 intron kek6 + chr3R_11_31625001 chr3R_31625001 RAL-361 3965 chr3R 31627681 31627706 chr3R 31627766 31627836 17 116 0.5 9.5 5.0 2.8 155 chr3R 31627681 intron kek6 + chr3R 31627758 intron kek6 + chr3R 31627836 intron kek6 + chr3R_17_31625001 chr3R_31625001 RAL-361 3966 chr3R 31630011 31630083 chr3R 31630166 31630237 30 155 6.0 6.0 6.0 4.3 226 chr3R 31630011 intron kek6 + chr3R 31630124 intron kek6 + chr3R 31630237 intron kek6 + chr3R_30_31630001 chr3R_31630001 RAL-361 3967 chr3R 31643173 31643245 chr3R 31643302 31643374 31 127 7.5 7.5 7.5 3.6 201 chr3R 31643173 intron kek6 + chr3R 31643274 intron kek6 + chr3R 31643374 intron kek6 + chr3R_31_31640001 chr3R_31640001 RAL-361 3968 chr3R 31691491 31691550 chr3R 31696306 31696366 Doc 24 4813 9.5 11.5 10.5 2.1 4875 chr3R 31691491 intergenic not near genes chr3R 31693928 intergenic not near genes chr3R 31696366 intergenic not near genes chr3R_24_31690001 chr3R_31690001 RAL-361 3969 chr3R 31808751 31808763 chr3R 31808920 31808932 5 169 18.0 0.0 9.0 0.5 181 chr3R 31808751 intron CG11576 - chr3R 31808842 intron CG11576 - chr3R 31808932 intron CG11576 - chr3R_5_31805001 chr3R_31805001 RAL-361 3970 chr3R 31808765 31808828 chr3R 31808919 31808927 10 159 6.0 0.0 3.0 2.5 162 chr3R 31808765 intron CG11576 - chr3R 31808846 intron CG11576 - chr3R 31808927 intron CG11576 - chr3R_10_31805001 chr3R_31805001 RAL-361 3971 chr3R 31831493 31831563 chr3R 31831622 31831692 39 128 6.5 8.0 7.2 4.8 199 chr3R 31831493 intron RhoGAP100F + chr3R 31831592 intron RhoGAP100F + chr3R 31831692 intron RhoGAP100F + chr3R_39_31830001 chr3R_31830001 RAL-361 3972 chr3R 31897809 31897877 chr3R 31897983 31898050 17 185 3.0 6.5 4.8 2.9 241 chr3R 31897809 intron heph - chr3R 31897930 intron heph - chr3R 31898050 intron heph - chr3R_17_31895001 chr3R_31895001 RAL-361 3973 chr3R 31911642 31911666 chr3R 31911778 31911802 9 136 16.0 10.5 13.2 0.6 160 chr3R 31911642 intron heph - chr3R 31911722 intron heph - chr3R 31911802 intron heph - chr3R_9_31910001 chr3R_31910001 RAL-361 3974 chr3R 31911667 31911705 chr3R 31911769 31911836 10 132 9.5 8.0 8.8 1.0 169 chr3R 31911667 intron heph - chr3R 31911752 intron heph - chr3R 31911836 intron heph - chr3R_10_31910001 chr3R_31910001 RAL-361 3975 chr3R 31930515 31930586 chr3R 31930647 31930718 28 128 5.0 8.5 6.8 3.6 203 chr3R 31930515 intron heph - chr3R 31930616 intron heph - chr3R 31930718 intron heph - chr3R_28_31930001 chr3R_31930001 RAL-361 3976 chr3R 31931143 31931214 chr3R 31931276 31931347 28 133 8.5 13.0 10.8 2.4 204 chr3R 31931143 intron heph - chr3R 31931245 intron heph - chr3R 31931347 intron heph - chr3R_28_31930001 chr3R_31930001 RAL-361 3977 chr3R 31954318 31954384 chr3R 31954478 31954544 6 157 6.5 9.5 8.0 0.7 226 chr3R 31954318 intron heph - chr3R 31954431 intron heph - chr3R 31954544 intron heph - chr3R_6_31950001 chr3R_31950001 RAL-361 3978 chr3R 31957947 31957987 chr3R 31958079 31958119 9 131 0.0 9.5 4.8 1.6 172 chr3R 31957947 intron heph - chr3R 31958033 intron heph - chr3R 31958119 intron heph - chr3R_9_31955001 chr3R_31955001 RAL-361 3979 chr3R 31997944 31998013 chr3R 32005464 32005533 blood 27 7518 6.5 9.0 7.8 3.1 7589 chr3R 31997944 intron heph - chr3R 32001738 intron heph - chr3R 32005533 intron heph - chr3R_27_32000001 chr3R_32000001 RAL-361 3980 chr3R 32016665 32016678 chr3R 32016794 32016806 13 129 19.0 8.5 13.8 0.9 141 chr3R 32016665 5` UTR CR45557 + chr3R 32016736 5` UTR CR45557 + chr3R 32016806 5` UTR CR45557 + chr3R_13_32015001 chr3R_32015001 RAL-361 3981 chr3R 32016682 32016734 chr3R 32016790 32016861 16 127 10.0 9.0 9.5 1.5 179 chr3R 32016682 5` UTR CR45557 + chr3R 32016772 5` UTR CR45557 + chr3R 32016861 5` UTR CR45557 + chr3R_16_32015001 chr3R_32015001 RAL-361 3982 chr3R 32034231 32034284 chr3R 32034347 32034417 23 131 9.0 6.0 7.5 2.7 186 chr3R 32034231 intergenic not near genes chr3R 32034324 intergenic not near genes chr3R 32034417 intergenic not near genes chr3R_23_32030001 chr3R_32030001 RAL-361 3983 chr3R 32061694 32061758 chr3R 32061988 32062052 19 294 43.0 49.5 46.2 0.4 358 chr3R 32061694 intron Map205 - chr3R 32061873 intron Map205 - chr3R 32062052 intron Map205 - chr3R_19_32060001 chr3R_32060001 RAL-361 3984 chr4 76452 76509 chr4 81945 82002 I-element 16 5492 9.5 11.0 10.2 1.4 5550 chr4 76452 intron pan + chr4 79227 intron pan + chr4 82002 intron pan + chr4_16_75001 chr4_75001 RAL-361 3985 chr4 319947 320013 chr4 328173 328239 Stalker2 24 8224 11.0 8.5 9.8 2.2 8292 chr4 319947 3` UTR CG32850 + chr4 324093 intron CG32850 + chr4 328239 3` UTR,3` UTR CG32850 +,PMCA - chr4_24_320001 chr4_320001 RAL-361 3986 chr4 671568 671627 chr4 680201 680260 Tirant 28 8632 12.0 12.5 12.2 2.1 8692 chr4 671568 intron CG11360 + chr4 675914 intron CG11360 + chr4 680260 intron CG11360 + chr4_28_675001 chr4_675001 RAL-361 3987 chr4 706635 706659 chr4 706818 706842 7 183 47.5 39.0 43.2 0.2 207 chr4 706635 intron ey + chr4 706738 intron ey + chr4 706842 intron ey + chr4_7_705001 chr4_705001 RAL-361 3988 chr4 959586 959648 chr4 959813 959867 17 228 5.0 6.5 5.8 2.5 281 chr4 959586 intergenic CR44030 +,CR45201 - chr4 959726 5` UTR CR44030 + chr4 959867 5` UTR CR44030 + chr4_17_955001 chr4_955001 RAL-361 3989 chr4 1112048 1112117 chr4 1112175 1112244 22 126 2.5 7.0 4.8 3.8 196 chr4 1112048 3` UTR sv + chr4 1112146 3` UTR sv + chr4 1112244 3` UTR sv + chr4_22_1110001 chr4_1110001 RAL-361 3990 chrX 295809 295882 chrX 303479 303552 412 16 7669 3.5 5.5 4.5 2.9 7743 chrX 295809 intron CG3777 + chrX 299680 intron CG3777 + chrX 303552 intron CG3777 + chrX_16_295001 chrX_295001 RAL-361 3991 chrX 318435 318491 chrX 323571 323627 flea 24 5136 6.5 10.5 8.5 2.5 5192 chrX 318435 intron,intron CG3777 +,CG32816 - chrX 321031 intron,intron CG3777 +,CG32816 - chrX 323627 intron,intron CG3777 +,CG32816 - chrX_24_320001 chrX_320001 RAL-361 3992 chrX 428375 428443 chrX 434610 434678 3S18 14 6235 4.0 4.5 4.2 2.7 6303 chrX 428375 intron CG32816 - chrX 431526 intron CG32816 - chrX 434678 intron CG32816 - chrX_14_430001 chrX_430001 RAL-361 3993 chrX 551383 551447 chrX 558995 559059 412 24 7609 8.0 13.0 10.5 2.1 7676 chrX 551383 intron Appl + chrX 555221 intron Appl + chrX 559059 intron Appl + chrX_24_555001 chrX_555001 RAL-361 3994 chrX 602783 602839 chrX 602929 602963 23 144 11.5 12.5 12.0 1.8 180 chrX 602783 intron CG13366 - chrX 602873 intron CG13366 - chrX 602963 intron CG13366 - chrX_23_600001 chrX_600001 RAL-361 3995 chrX 677364 677442 chrX 677520 677597 26 155 5.0 7.5 6.2 3.6 233 chrX 677364 intergenic not near genes chrX 677480 intergenic not near genes chrX 677597 intergenic not near genes chrX_26_675001 chrX_675001 RAL-361 3996 chrX 778086 778158 chrX 778224 778288 22 135 6.5 0.0 3.2 5.2 202 chrX 778086 intron fz3 + chrX 778187 intron fz3 + chrX 778288 intron fz3 + chrX_22_775001 chrX_775001 RAL-361 3997 chrX 802246 802321 chrX 802373 802417 15 116 9.5 12.0 10.8 1.3 171 chrX 802246 exon CG13359 - chrX 802332 exon CG13359 - chrX 802417 exon CG13359 - chrX_15_800001 chrX_800001 RAL-361 3998 chrX 812225 812289 chrX 817906 817970 297 16 5680 6.5 6.5 6.5 2.1 5745 chrX 812225 intron CG43867 - chrX 815098 intron CG43867 - chrX 817970 intron CG43867 - chrX_16_815001 chrX_815001 RAL-361 3999 chrX 827559 827626 chrX 835401 835468 roo 21 7839 9.0 6.5 7.8 2.4 7909 chrX 827559 intron CG43867 - chrX 831514 intron CG43867 - chrX 835468 intron CG43867 - chrX_21_830001 chrX_830001 RAL-361 4000 chrX 906651 906720 chrX 908490 908559 S-element 23 1838 2.0 6.5 4.2 4.4 1908 chrX 906651 intron CG43867 - chrX 907605 intron CG43867 - chrX 908559 intron CG43867 - chrX_23_905001 chrX_905001 RAL-361 4001 chrX 911983 912004 chrX 912123 912144 9 139 12.5 11.0 11.8 0.7 161 chrX 911983 intron CG43867 - chrX 912064 intron CG43867 - chrX 912144 intron CG43867 - chrX_9_910001 chrX_910001 RAL-361 4002 chrX 912006 912050 chrX 912114 912190 23 135 4.5 9.0 6.8 2.9 184 chrX 912006 intron CG43867 - chrX 912098 intron CG43867 - chrX 912190 intron CG43867 - chrX_23_910001 chrX_910001 RAL-361 4003 chrX 983723 983791 chrX 983891 983949 21 163 5.0 3.5 4.2 4.0 226 chrX 983723 intergenic not near genes chrX 983836 intergenic not near genes chrX 983949 intergenic not near genes chrX_21_980001 chrX_980001 RAL-361 4004 chrX 1033309 1033322 chrX 1040992 1041005 412 4 7682 16.5 6.0 11.2 0.3 7696 chrX 1033309 intron su(w[a]) + chrX 1037157 intron su(w[a]) + chrX 1041005 intron su(w[a]) + chrX_4_1035001 chrX_1035001 RAL-361 4005 chrX 1050511 1050582 chrX 1050637 1050708 27 123 5.5 9.5 7.5 3.2 197 chrX 1050511 intron CR44779 + chrX 1050610 intron CR44779 + chrX 1050708 intron CR44779 + chrX_27_1050001 chrX_1050001 RAL-361 4006 chrX 1051031 1051080 chrX 1051159 1051208 15 122 13.5 15.5 14.5 1.0 177 chrX 1051031 intron CR44779 + chrX 1051120 intron CR44779 + chrX 1051208 intron CR44779 + chrX_15_1050001 chrX_1050001 RAL-361 4007 chrX 1053119 1053120 chrX 16983076 16983077 9 15929957 31.0 30.5 30.8 0.3 15929958 chrX 1053119 intron CR44779 + chrX 9018098 intron,intron rdgA +,CR43836 - chrX 16983077 intron CG45002 - chrX_9_9015001 chrX_9015001 RAL-361 4008 chrX 1063714 1063747 chrX 1072557 1072590 roo 8 8843 16.5 3.0 9.8 0.7 8876 chrX 1063714 intron CR44779 + chrX 1068152 intron CR44779 + chrX 1072590 intron CR44779 + chrX_8_1065001 chrX_1065001 RAL-361 4009 chrX 1253687 1253734 chrX 1253819 1253866 18 131 12.0 5.5 8.8 1.8 179 chrX 1253687 intron Atf3 - chrX 1253776 intron Atf3 - chrX 1253866 intron Atf3 - chrX_18_1250001 chrX_1250001 RAL-361 4010 chrX 1253735 1253761 chrX 1253815 1253893 10 123 8.5 6.0 7.2 1.2 158 chrX 1253735 intron Atf3 - chrX 1253814 intron Atf3 - chrX 1253893 intron Atf3 - chrX_10_1250001 chrX_1250001 RAL-361 4011 chrX 1357735 1357796 chrX 1367955 1368016 Doc 28 10219 9.0 15.0 12.0 2.2 10281 chrX 1357735 intergenic png - chrX 1362876 intergenic not near genes chrX 1368016 intergenic not near genes chrX_28_1360001 chrX_1360001 RAL-361 4012 chrX 1481394 1481409 chrX 1481537 1481552 6 143 21.5 8.0 14.8 0.4 158 chrX 1481394 3` UTR rush + chrX 1481473 intergenic rush +,sta - chrX 1481552 intergenic rush +,sta - chrX_6_1480001 chrX_1480001 RAL-361 4013 chrX 1518004 1518061 chrX 1523450 1523513 jockey 20 5451 11.0 9.0 10.0 1.8 5509 chrX 1518004 intergenic inc + chrX 1520758 intergenic not near genes chrX 1523513 intergenic not near genes chrX_20_1520001 chrX_1520001 RAL-361 4014 chrX 1627266 1627310 chrX 1627393 1627437 15 126 12.0 8.0 10.0 1.4 171 chrX 1627266 intron,intron Mur2B -,br + chrX 1627352 intron,intron Mur2B -,br + chrX 1627437 intron,intron Mur2B -,br + chrX_15_1625001 chrX_1625001 RAL-361 4015 chrX 1651611 1651655 chrX 1651742 1651786 16 131 9.5 7.0 8.2 1.7 175 chrX 1651611 intron Mur2B - chrX 1651698 intron Mur2B - chrX 1651786 intron Mur2B - chrX_16_1650001 chrX_1650001 RAL-361 4016 chrX 1930493 1930504 chrX 1938114 1938125 opus 6 7621 15.5 11.0 13.2 0.4 7632 chrX 1930493 3` UTR CG11596 + chrX 1934309 intergenic not near genes chrX 1938125 3` UTR CG3857 - chrX_6_1930001 chrX_1930001 RAL-361 4017 chrX 1930505 1930554 chrX 1938126 1938175 opus 23 7621 8.5 14.0 11.2 1.9 7670 chrX 1930505 3` UTR CG11596 + chrX 1934340 intergenic not near genes chrX 1938175 3` UTR CG3857 - chrX_23_1930001 chrX_1930001 RAL-361 4018 chrX 1954872 1954916 chrX 1962826 1962846 Stalker2 15 7964 3.0 4.0 3.5 3.3 7974 chrX 1954872 intron Hr4 + chrX 1958859 intron Hr4 + chrX 1962846 intron Hr4 + chrX_15_1955001 chrX_1955001 RAL-361 4019 chrX 2308795 2308816 chrX 2317427 2317441 Tirant 9 8632 5.5 12.5 9.0 0.9 8646 chrX 2308795 intron phl + chrX 2313118 intron phl + chrX 2317441 intron phl + chrX_9_2310001 chrX_2310001 RAL-361 4020 chrX 2399801 2399813 chrX 2408204 2408216 roo 5 8401 16.5 4.0 10.2 0.4 8415 chrX 2399801 intergenic not near genes chrX 2404008 intergenic not near genes chrX 2408216 intergenic not near genes chrX_5_2400001 chrX_2400001 RAL-361 4021 chrX 2399834 2399868 chrX 2408191 2408255 roo 8 8382 9.5 0.5 5.0 1.3 8421 chrX 2399834 intergenic not near genes chrX 2404044 intergenic not near genes chrX 2408255 intergenic not near genes chrX_8_2400001 chrX_2400001 RAL-361 4022 chrX 2482721 2482725 chrX 2482849 2482853 4 128 16.0 8.5 12.2 0.3 132 chrX 2482721 intron trol - chrX 2482787 intron trol - chrX 2482853 intron trol - chrX_4_2480001 chrX_2480001 RAL-361 4023 chrX 2578771 2578845 chrX 2578910 2578987 17 140 2.0 7.5 4.8 2.9 216 chrX 2578771 intergenic Pdfr +,Vha36-3 - chrX 2578879 intergenic Vha36-3 -,Pdfr + chrX 2578987 intergenic Vha36-3 -,Pdfr + chrX_17_2575001 chrX_2575001 RAL-361 4024 chrX 2610342 2610405 chrX 2617509 2617572 HMS-Beagle 10 7166 6.0 8.5 7.2 1.2 7230 chrX 2610342 intergenic CG8636 - chrX 2613957 intergenic not near genes chrX 2617572 intergenic Tsp3A - chrX_10_2610001 chrX_2610001 RAL-361 4025 chrX 2635322 2635401 chrX 2635481 2635539 33 157 4.0 5.5 4.8 5.7 217 chrX 2635322 intron sgg + chrX 2635430 intron sgg + chrX 2635539 intron sgg + chrX_33_2635001 chrX_2635001 RAL-361 4026 chrX 2664324 2664404 chrX 2665530 2665606 1360 15 1203 5.0 0.0 2.5 4.3 1282 chrX 2664324 intron sgg + chrX 2664965 intron sgg + chrX 2665606 intron sgg + chrX_15_2660001 chrX_2660001 RAL-361 4027 chrX 2823769 2823780 chrX 2832347 2832378 roo 4 8593 10.5 10.0 10.2 0.4 8609 chrX 2823769 intron kirre + chrX 2828074 intron kirre + chrX 2832378 intron kirre + chrX_4_2825001 chrX_2825001 RAL-361 4028 chrX 2844854 2844925 chrX 2852314 2852385 mdg1 28 7460 8.0 6.5 7.2 3.4 7531 chrX 2844854 intron kirre + chrX 2848620 intron kirre + chrX 2852385 intron kirre + chrX_28_2845001 chrX_2845001 RAL-361 4029 chrX 2971983 2972048 chrX 2972173 2972238 16 189 6.0 9.0 7.5 1.9 255 chrX 2971983 intron,intron kirre +,rst - chrX 2972110 intron,intron kirre +,rst - chrX 2972238 intron,intron kirre +,rst - chrX_16_2970001 chrX_2970001 RAL-361 4030 chrX 3057978 3058043 chrX 3058269 3058334 pogo 14 291 9.0 7.0 8.0 1.6 356 chrX 3057978 intron kirre + chrX 3058156 intron kirre + chrX 3058334 intron kirre + chrX_14_3055001 chrX_3055001 RAL-361 4031 chrX 3075581 3075617 chrX 3080941 3080977 Transpac 9 5360 12.5 0.5 6.5 1.2 5396 chrX 3075581 intron kirre + chrX 3078279 intron kirre + chrX 3080977 intron kirre + chrX_9_3075001 chrX_3075001 RAL-361 4032 chrX 3082560 3082602 chrX 3082687 3082689 10 115 7.0 6.5 6.8 1.3 129 chrX 3082560 intron kirre + chrX 3082624 intron kirre + chrX 3082689 intron kirre + chrX_10_3080001 chrX_3080001 RAL-361 4033 chrX 3111029 3111045 chrX 3111157 3111160 4 126 14.5 0.0 7.2 0.5 131 chrX 3111029 intron kirre + chrX 3111094 intron kirre + chrX 3111160 intron kirre + chrX_4_3110001 chrX_3110001 RAL-361 4034 chrX 3158529 3158608 chrX 3158693 3158772 23 161 5.0 1.5 3.2 5.5 243 chrX 3158529 intron N + chrX 3158650 intron N + chrX 3158772 intron N + chrX_23_3155001 chrX_3155001 RAL-361 4035 chrX 3206434 3206492 chrX 3206563 3206621 10 129 2.5 4.0 3.2 2.4 187 chrX 3206434 intron dnc + chrX 3206528 intron dnc + chrX 3206621 intron dnc + chrX_10_3205001 chrX_3205001 RAL-361 4036 chrX 3212589 3212612 chrX 3212724 3212747 9 135 6.0 16.5 11.2 0.7 158 chrX 3212589 intron dnc + chrX 3212668 intron dnc + chrX 3212747 intron dnc + chrX_9_3210001 chrX_3210001 RAL-361 4037 chrX 3243619 3243648 chrX 3243759 3243788 11 140 10.5 14.0 12.2 0.8 169 chrX 3243619 intron dnc + chrX 3243704 intron dnc + chrX 3243788 intron dnc + chrX_11_3240001 chrX_3240001 RAL-361 4038 chrX 3306301 3306374 chrX 3306433 3306506 13 132 6.5 0.0 3.2 3.1 205 chrX 3306301 intron dnc + chrX 3306404 intron dnc + chrX 3306506 intron dnc + chrX_13_3305001 chrX_3305001 RAL-361 4039 chrX 3318396 3318430 chrX 3318705 3318772 4 334 7.0 4.5 5.8 0.6 376 chrX 3318396 intron,intron dnc +,CR44886 - chrX 3318584 intron,intron dnc +,CR44886 - chrX 3318772 intron,intron dnc +,CR44886 - chrX_4_3315001 chrX_3315001 RAL-361 4040 chrX 3318433 3318445 chrX 3318704 3318712 12 294 4.5 3.5 4.0 2.4 279 chrX 3318433 intron,intron dnc +,CR44886 - chrX 3318572 intron,intron dnc +,CR44886 - chrX 3318712 intron,intron dnc +,CR44886 - chrX_12_3315001 chrX_3315001 RAL-361 4041 chrX 3351762 3351810 chrX 3351891 3351905 15 128 6.5 13.0 9.8 1.4 143 chrX 3351762 intergenic not near genes chrX 3351834 intergenic not near genes chrX 3351905 intergenic not near genes chrX_15_3350001 chrX_3350001 RAL-361 4042 chrX 3352720 3352747 chrX 3352859 3352885 10 139 9.0 15.5 12.2 0.8 165 chrX 3352720 intergenic not near genes chrX 3352802 intergenic not near genes chrX 3352885 intergenic not near genes chrX_10_3350001 chrX_3350001 RAL-361 4043 chrX 3357877 3357916 chrX 3358005 3358043 10 125 10.0 10.0 10.0 0.9 166 chrX 3357877 intergenic not near genes chrX 3357960 intergenic not near genes chrX 3358043 intergenic not near genes chrX_10_3355001 chrX_3355001 RAL-361 4044 chrX 3414975 3415039 chrX 3421209 3421274 3S18 21 6233 7.0 7.0 7.0 2.6 6299 chrX 3414975 intron,intron CR44999 +,CG12535 - chrX 3418124 intron,intron CR44999 +,CG12535 - chrX 3421274 intron,intron CR44999 +,CG12535 - chrX_21_3415001 chrX_3415001 RAL-361 4045 chrX 3435803 3435854 chrX 3435934 3435988 19 132 3.0 5.5 4.2 3.7 185 chrX 3435803 intron,intron,5` UTR CR44999 +,CG12535 -,CG14269 - chrX 3435896 intron,intron CR44999 +,CG12535 - chrX 3435988 intron,intron CR44999 +,CG12535 - chrX_19_3435001 chrX_3435001 RAL-361 4046 chrX 3437430 3437451 chrX 3437516 3437577 9 121 7.5 9.5 8.5 0.9 147 chrX 3437430 intron,intron CR44999 +,CG12535 - chrX 3437504 intron,intron CR44999 +,CG12535 - chrX 3437577 intron,intron CR44999 +,CG12535 - chrX_9_3435001 chrX_3435001 RAL-361 4047 chrX 3493047 3493116 chrX 3502256 3502320 roo 14 9208 5.5 3.5 4.5 2.5 9273 chrX 3493047 intron,exon CR44999 +,Gas8 - chrX 3497684 intron,intron CR44999 +,Gas8 - chrX 3502320 intron,intron CR44999 +,Gas8 - chrX_14_3495001 chrX_3495001 RAL-361 4048 chrX 3535356 3535431 chrX 3535499 3535572 24 142 5.5 5.0 5.2 3.9 216 chrX 3535356 intron CG32791 - chrX 3535464 intron CG32791 - chrX 3535572 intron CG32791 - chrX_24_3535001 chrX_3535001 RAL-361 4049 chrX 3567237 3567292 chrX 3567372 3567427 12 135 8.5 3.5 6.0 1.7 190 chrX 3567237 intron,intron CG32791 -,ppk8 + chrX 3567332 intron,intron CG32791 -,ppk8 + chrX 3567427 intron,intron CG32791 -,ppk8 + chrX_12_3565001 chrX_3565001 RAL-361 4050 chrX 3597511 3597569 chrX 3619729 3619787 roo 20 22216 11.0 9.0 10.0 1.8 22276 chrX 3597511 intron AstA-R1 + chrX 3608649 intron AstA-R1 + chrX 3619787 intron AstA-R1 + chrX_20_3605001 chrX_3605001 RAL-361 4051 chrX 3620419 3620486 chrX 3620568 3620635 23 149 0.0 7.5 3.8 4.8 216 chrX 3620419 intron AstA-R1 + chrX 3620527 intron AstA-R1 + chrX 3620635 intron AstA-R1 + chrX_23_3620001 chrX_3620001 RAL-361 4052 chrX 3640282 3640309 chrX 3640437 3640464 7 155 6.5 12.0 9.2 0.7 182 chrX 3640282 intron AstA-R1 + chrX 3640373 intron AstA-R1 + chrX 3640464 intron AstA-R1 + chrX_7_3640001 chrX_3640001 RAL-361 4053 chrX 3662441 3662471 chrX 3662573 3662605 10 134 9.0 13.5 11.2 0.8 164 chrX 3662441 intron AstA-R1 + chrX 3662523 intron AstA-R1 + chrX 3662605 intron AstA-R1 + chrX_10_3660001 chrX_3660001 RAL-361 4054 chrX 3726724 3726783 chrX 3730171 3730220 NOF 22 3447 5.5 6.5 6.0 3.1 3496 chrX 3726724 intron tlk + chrX 3728472 intron tlk + chrX 3730220 intron tlk + chrX_22_3725001 chrX_3725001 RAL-361 4055 chrX 3842304 3842353 chrX 3842572 3842621 pogo 20 268 2.5 6.5 4.5 3.6 317 chrX 3842304 intron ec + chrX 3842462 intron ec + chrX 3842621 intron ec + chrX_20_3840001 chrX_3840001 RAL-361 4056 chrX 3880447 3880487 chrX 3880583 3880623 9 136 0.0 11.0 5.5 1.4 176 chrX 3880447 intergenic VhaAC39-1 + chrX 3880535 intergenic VhaAC39-1 + chrX 3880623 intergenic VhaAC39-1 + chrX_9_3880001 chrX_3880001 RAL-361 4057 chrX 3881234 3881297 chrX 3881423 3881486 22 188 7.5 10.5 9.0 2.2 252 chrX 3881234 intron VhaAC39-1 + chrX 3881360 intron VhaAC39-1 + chrX 3881486 exon VhaAC39-1 + chrX_22_3880001 chrX_3880001 RAL-361 4058 chrX 3891105 3891175 chrX 3891267 3891333 19 167 5.0 5.5 5.2 3.1 228 chrX 3891105 intergenic CG42541 - chrX 3891219 intergenic CG42541 - chrX 3891333 intergenic CG42541 - chrX_19_3890001 chrX_3890001 RAL-361 4059 chrX 3899581 3899622 chrX 3899708 3899749 13 126 14.5 11.0 12.8 0.9 168 chrX 3899581 intron CG42541 - chrX 3899665 intron CG42541 - chrX 3899749 intron CG42541 - chrX_13_3895001 chrX_3895001 RAL-361 4060 chrX 3916077 3916140 chrX 3916215 3916277 6 138 4.0 5.5 4.8 1.0 200 chrX 3916077 intron CG42541 - chrX 3916177 intron CG42541 - chrX 3916277 intron CG42541 - chrX_6_3915001 chrX_3915001 RAL-361 4061 chrX 3986833 3986889 chrX 3994516 3994572 412 20 7680 4.5 7.5 6.0 2.9 7739 chrX 3986833 intergenic not near genes chrX 3990702 intergenic not near genes chrX 3994572 intergenic not near genes chrX_20_3990001 chrX_3990001 RAL-361 4062 chrX 4021124 4021183 chrX 4021272 4021325 22 145 9.0 7.0 8.0 2.4 201 chrX 4021124 intergenic not near genes chrX 4021224 intergenic not near genes chrX 4021325 intergenic not near genes chrX_22_4020001 chrX_4020001 RAL-361 4063 chrX 4029496 4029554 chrX 4029735 4029794 14 240 7.5 10.5 9.0 1.4 298 chrX 4029496 intergenic not near genes chrX 4029645 intergenic not near genes chrX 4029794 intergenic not near genes chrX_14_4025001 chrX_4025001 RAL-361 4064 chrX 4101824 4101895 chrX 4101953 4101995 22 128 5.5 8.5 7.0 2.8 171 chrX 4101824 exon CG15375 + chrX 4101910 exon CG15375 + chrX 4101995 exon CG15375 + chrX_22_4100001 chrX_4100001 RAL-361 4065 chrX 4132622 4132691 chrX 4132841 4132910 24 216 6.0 7.0 6.5 3.2 288 chrX 4132622 3` UTR GlcAT-I + chrX 4132766 3` UTR GlcAT-I + chrX 4132910 3` UTR Fas2 - chrX_24_4130001 chrX_4130001 RAL-361 4066 chrX 4157857 4157868 chrX 4164960 4164971 297 5 7102 18.0 7.5 12.8 0.4 7114 chrX 4157857 intron Fas2 - chrX 4161414 intron Fas2 - chrX 4164971 intron Fas2 - chrX_5_4160001 chrX_4160001 RAL-361 4067 chrX 4157869 4157919 chrX 4164952 4165021 297 13 7098 9.0 5.5 7.2 1.6 7152 chrX 4157869 intron Fas2 - chrX 4161445 intron Fas2 - chrX 4165021 intron Fas2 - chrX_13_4160001 chrX_4160001 RAL-361 4068 chrX 4212663 4212690 chrX 4212796 4212823 8 130 2.5 10.0 6.2 1.1 160 chrX 4212663 intergenic CG43288 + chrX 4212743 intergenic CG43288 + chrX 4212823 intergenic CG43288 + chrX_8_4210001 chrX_4210001 RAL-361 4069 chrX 4229937 4229981 chrX 4230103 4230147 12 166 8.0 6.0 7.0 1.5 210 chrX 4229937 intergenic not near genes chrX 4230042 intergenic not near genes chrX 4230147 intergenic not near genes chrX_12_4230001 chrX_4230001 RAL-361 4070 chrX 4263555 4263627 chrX 4263692 4263764 11 136 8.0 11.5 9.8 1.0 209 chrX 4263555 intergenic not near genes chrX 4263660 intergenic not near genes chrX 4263764 intergenic not near genes chrX_11_4260001 chrX_4260001 RAL-361 4071 chrX 4324343 4324411 chrX 4324470 4324538 14 126 3.5 8.0 5.8 2.1 195 chrX 4324343 intron norpA + chrX 4324440 intron norpA + chrX 4324538 intron norpA + chrX_14_4320001 chrX_4320001 RAL-361 4072 chrX 4337880 4337912 chrX 4338053 4338085 12 171 15.0 3.0 9.0 1.2 205 chrX 4337880 intron norpA + chrX 4337982 intron norpA + chrX 4338085 intron norpA + chrX_12_4335001 chrX_4335001 RAL-361 4073 chrX 4337914 4337944 chrX 4338042 4338117 12 168 9.0 1.5 5.2 1.9 203 chrX 4337914 intron norpA + chrX 4338016 intron norpA + chrX 4338117 intron norpA + chrX_12_4335001 chrX_4335001 RAL-361 4074 chrX 4343839 4343896 chrX 4344005 4344060 18 164 6.0 3.5 4.8 3.1 221 chrX 4343839 intron norpA + chrX 4343950 intron norpA + chrX 4344060 intron norpA + chrX_18_4340001 chrX_4340001 RAL-361 4075 chrX 4358048 4358077 chrX 4358200 4358229 11 152 20.5 0.0 10.2 1.0 181 chrX 4358048 intron norpA + chrX 4358138 intron norpA + chrX 4358229 intron norpA + chrX_11_4355001 chrX_4355001 RAL-361 4076 chrX 4361407 4361428 chrX 4361536 4361557 10 129 12.5 0.5 6.5 1.3 150 chrX 4361407 intron norpA + chrX 4361482 intron norpA + chrX 4361557 intron norpA + chrX_10_4360001 chrX_4360001 RAL-361 4077 chrX 4388256 4388275 chrX 4388439 4388458 5 183 4.5 12.5 8.5 0.5 202 chrX 4388256 intron CR32773 - chrX 4388357 intron CR32773 - chrX 4388458 intron CR32773 - chrX_5_4385001 chrX_4385001 RAL-361 4078 chrX 4396943 4396948 chrX 4397078 4397083 5 135 16.0 13.5 14.8 0.3 140 chrX 4396943 intron CR32773 - chrX 4397013 intron CR32773 - chrX 4397083 intron CR32773 - chrX_5_4395001 chrX_4395001 RAL-361 4079 chrX 4396950 4397004 chrX 4397075 4397118 22 131 9.5 12.5 11.0 1.8 168 chrX 4396950 intron CR32773 - chrX 4397034 intron CR32773 - chrX 4397118 intron CR32773 - chrX_22_4395001 chrX_4395001 RAL-361 4080 chrX 4436459 4436496 chrX 4436535 4436629 11 127 7.5 6.5 7.0 1.4 170 chrX 4436459 intron,intron CR32773 -,bi + chrX 4436544 intron,intron CR32773 -,bi + chrX 4436629 intron,intron CR32773 -,bi + chrX_11_4435001 chrX_4435001 RAL-361 4081 chrX 4700349 4700422 chrX 4700742 4700815 jockey 27 392 5.0 7.5 6.2 3.8 466 chrX 4700349 3` UTR ctp + chrX 4700582 3` UTR ctp + chrX 4700815 3` UTR ctp + chrX_27_4700001 chrX_4700001 RAL-361 4082 chrX 4723526 4723577 chrX 4723656 4723702 10 129 6.5 4.0 5.2 1.6 176 chrX 4723526 exon Proc-R + chrX 4723614 intron Proc-R + chrX 4723702 intron Proc-R + chrX_10_4720001 chrX_4720001 RAL-361 4083 chrX 4731775 4731806 chrX 4736918 4736920 jockey 5 5130 17.0 6.5 11.8 0.4 5145 chrX 4731775 intergenic not near genes chrX 4734348 intergenic not near genes chrX 4736920 intergenic not near genes chrX_5_4730001 chrX_4730001 RAL-361 4084 chrX 4744751 4744822 chrX 4744886 4744957 12 135 3.5 7.0 5.2 1.9 206 chrX 4744751 intergenic not near genes chrX 4744854 intergenic not near genes chrX 4744957 intergenic not near genes chrX_12_4740001 chrX_4740001 RAL-361 4085 chrX 4757365 4757405 chrX 4757494 4757529 7 127 0.0 12.5 6.2 1.0 164 chrX 4757365 intergenic not near genes chrX 4757447 intergenic not near genes chrX 4757529 intergenic not near genes chrX_7_4755001 chrX_4755001 RAL-361 4086 chrX 4763211 4763275 chrX 4763749 4763813 Stalker4 20 536 10.5 7.5 9.0 2.0 602 chrX 4763211 intergenic not near genes chrX 4763512 intergenic not near genes chrX 4763813 intergenic not near genes chrX_20_4760001 chrX_4760001 RAL-361 4087 chrX 4792339 4792395 chrX 4792822 4792878 jockey 13 483 7.0 6.0 6.5 1.7 539 chrX 4792339 intergenic not near genes chrX 4792608 intergenic not near genes chrX 4792878 intergenic not near genes chrX_13_4790001 chrX_4790001 RAL-361 4088 chrX 4827939 4827991 chrX 4835347 4835412 Stalker4 17 7412 7.0 9.0 8.0 1.9 7473 chrX 4827939 intergenic not near genes chrX 4831676 intergenic not near genes chrX 4835412 intergenic not near genes chrX_17_4830001 chrX_4830001 RAL-361 4089 chrX 4856103 4856139 chrX 4856220 4856274 5 123 8.0 5.0 6.5 0.7 171 chrX 4856103 intron CG42594 + chrX 4856188 intron CG42594 + chrX 4856274 intron CG42594 + chrX_5_4855001 chrX_4855001 RAL-361 4090 chrX 4931323 4931371 chrX 4931467 4931515 19 139 62.5 69.0 65.8 0.3 192 chrX 4931323 intron CG44774 - chrX 4931419 intron CG44774 - chrX 4931515 intron CG44774 - chrX_19_4930001 chrX_4930001 RAL-361 4091 chrX 4990014 4990072 chrX 4997278 4997336 roo 20 7263 6.5 8.0 7.2 2.4 7322 chrX 4990014 intron CR44833 - chrX 4993675 intron CR44833 - chrX 4997336 intron CR44833 - chrX_20_4990001 chrX_4990001 RAL-361 4092 chrX 5096239 5096302 chrX 5103844 5103917 springer 21 7614 6.0 6.5 6.2 2.9 7678 chrX 5096239 intron,intron CG15465 +,rg + chrX 5100078 intron,intron CG15465 +,rg + chrX 5103917 intron,intron CG15465 +,rg + chrX_21_5100001 chrX_5100001 RAL-361 4093 chrX 5120615 5120661 chrX 5120773 5120827 4 155 4.0 6.5 5.2 0.6 212 chrX 5120615 intron,intron CG15465 +,rg + chrX 5120721 intron,intron CG15465 +,rg + chrX 5120827 intron,intron CG15465 +,rg + chrX_4_5120001 chrX_5120001 RAL-361 4094 chrX 5131381 5131424 chrX 5131482 5131523 14 120 4.0 4.5 4.2 2.7 142 chrX 5131381 intron,intron CG15465 +,rg + chrX 5131452 intron,intron CG15465 +,rg + chrX 5131523 intron,intron CG15465 +,rg + chrX_14_5130001 chrX_5130001 RAL-361 4095 chrX 5134799 5134816 chrX 5134950 5134967 5 151 8.0 20.0 14.0 0.3 168 chrX 5134799 intron,intron CG15465 +,rg + chrX 5134883 intron,intron CG15465 +,rg + chrX 5134967 intron,intron CG15465 +,rg + chrX_5_5130001 chrX_5130001 RAL-361 4096 chrX 5206257 5206273 chrX 5206580 5206596 10 320 15.5 7.0 11.2 0.8 339 chrX 5206257 intron,intron CG15465 +,rg + chrX 5206426 intron,intron CG15465 +,rg + chrX 5206596 intron,intron CG15465 +,rg + chrX_10_5205001 chrX_5205001 RAL-361 4097 chrX 5206275 5206328 chrX 5206575 5206651 21 320 5.0 6.0 5.5 3.2 376 chrX 5206275 intron,intron CG15465 +,rg + chrX 5206463 intron,intron CG15465 +,rg + chrX 5206651 intron,intron CG15465 +,rg + chrX_21_5205001 chrX_5205001 RAL-361 4098 chrX 5272778 5272848 chrX 5272909 5272986 19 136 2.5 3.5 3.0 4.8 208 chrX 5272778 intergenic not near genes chrX 5272882 intergenic not near genes chrX 5272986 intergenic not near genes chrX_19_5270001 chrX_5270001 RAL-361 4099 chrX 5291462 5291505 chrX 5291592 5291628 13 128 12.0 12.0 12.0 1.0 166 chrX 5291462 intergenic not near genes chrX 5291545 intergenic not near genes chrX 5291628 intergenic not near genes chrX_13_5290001 chrX_5290001 RAL-361 4100 chrX 5323023 5323095 chrX 5323335 5323422 6 324 4.5 0.0 2.2 1.9 399 chrX 5323023 intergenic Rnp4F - chrX 5323222 intergenic not near genes chrX 5323422 intergenic Mcm3 + chrX_6_5320001 chrX_5320001 RAL-361 4101 chrX 5338662 5338725 chrX 5339965 5340025 jockey 11 1303 9.5 3.0 6.2 1.5 1363 chrX 5338662 intergenic not near genes chrX 5339344 intergenic not near genes chrX 5340025 intergenic SK + chrX_11_5335001 chrX_5335001 RAL-361 4102 chrX 5345402 5345456 chrX 5345564 5345618 17 162 4.5 7.5 6.0 2.4 216 chrX 5345402 intron SK + chrX 5345510 intron SK + chrX 5345618 intron SK + chrX_17_5345001 chrX_5345001 RAL-361 4103 chrX 5349232 5349304 chrX 5349359 5349431 25 127 7.5 7.5 7.5 2.9 199 chrX 5349232 intron SK + chrX 5349332 intron SK + chrX 5349431 intron SK + chrX_25_5345001 chrX_5345001 RAL-361 4104 chrX 5473544 5473609 chrX 5473670 5473735 18 123 10.0 6.5 8.2 2.0 191 chrX 5473544 intron SPR + chrX 5473640 intron SPR + chrX 5473735 intron SPR + chrX_18_5470001 chrX_5470001 RAL-361 4105 chrX 5481077 5481089 chrX 5485087 5485099 I-element 4 4010 0.0 4.5 2.2 1.2 4022 chrX 5481077 intron SPR + chrX 5483088 intron SPR + chrX 5485099 intron SPR + chrX_4_5480001 chrX_5480001 RAL-361 4106 chrX 5486766 5486783 chrX 5486892 5486914 8 130 13.0 14.0 13.5 0.6 148 chrX 5486766 intron SPR + chrX 5486840 intron SPR + chrX 5486914 intron SPR + chrX_8_5485001 chrX_5485001 RAL-361 4107 chrX 5486784 5486794 chrX 5486891 5486913 6 124 12.5 14.0 13.2 0.4 129 chrX 5486784 intron SPR + chrX 5486848 intron SPR + chrX 5486913 intron SPR + chrX_6_5485001 chrX_5485001 RAL-361 4108 chrX 5524806 5524828 chrX 5528719 5528741 412 6 3913 13.0 4.0 8.5 0.6 3935 chrX 5524806 intergenic snoRNA:Psi28S-3342 - chrX 5526774 intergenic not near genes chrX 5528741 intergenic Vsx2 - chrX_6_5525001 chrX_5525001 RAL-361 4109 chrX 5555344 5555390 chrX 5555499 5555561 9 160 8.0 5.5 6.8 1.2 217 chrX 5555344 intron Vsx2 - chrX 5555452 intron Vsx2 - chrX 5555561 intron Vsx2 - chrX_9_5555001 chrX_5555001 RAL-361 4110 chrX 5727373 5727415 chrX 5732162 5732204 Doc 19 4788 4.5 11.0 7.8 2.2 4831 chrX 5727373 intron CG32758 - chrX 5729788 intron CG32758 - chrX 5732204 intron CG32758 - chrX_19_5725001 chrX_5725001 RAL-361 4111 chrX 5796866 5796918 chrX 5796995 5797027 14 127 10.0 3.5 6.8 1.8 161 chrX 5796866 intergenic not near genes chrX 5796946 intergenic not near genes chrX 5797027 intergenic not near genes chrX_14_5795001 chrX_5795001 RAL-361 4112 chrX 5883764 5883839 chrX 5884055 5884094 pogo 24 289 7.0 5.0 6.0 3.4 330 chrX 5883764 intron CR45668 - chrX 5883929 intron CR45668 - chrX 5884094 intron CR45668 - chrX_24_5880001 chrX_5880001 RAL-361 4113 chrX 5884118 5884182 chrX 5884409 5884473 pogo 18 290 5.0 8.5 6.8 2.3 355 chrX 5884118 intron CR45668 - chrX 5884296 intron CR45668 - chrX 5884473 intron CR45668 - chrX_18_5880001 chrX_5880001 RAL-361 4114 chrX 6118654 6118730 chrX 6118784 6118852 27 132 7.5 6.0 6.8 3.5 198 chrX 6118654 intron Ca-alpha1T - chrX 6118753 intron Ca-alpha1T - chrX 6118852 intron Ca-alpha1T - chrX_27_6115001 chrX_6115001 RAL-361 4115 chrX 6171544 6171577 chrX 6179027 6179060 Quasimodo 12 7483 15.5 6.5 11.0 1.0 7516 chrX 6171544 intron Ca-alpha1T - chrX 6175302 intron Ca-alpha1T - chrX 6179060 intron Ca-alpha1T - chrX_12_6175001 chrX_6175001 RAL-361 4116 chrX 6171578 6171605 chrX 6179018 6179088 Quasimodo 9 7478 11.5 5.0 8.2 1.0 7510 chrX 6171578 intron Ca-alpha1T - chrX 6175333 intron Ca-alpha1T - chrX 6179088 intron Ca-alpha1T - chrX_9_6175001 chrX_6175001 RAL-361 4117 chrX 6215490 6215497 chrX 6215621 6215628 5 131 17.0 11.5 14.2 0.3 138 chrX 6215490 intergenic not near genes chrX 6215559 intergenic not near genes chrX 6215628 intergenic not near genes chrX_5_6215001 chrX_6215001 RAL-361 4118 chrX 6215503 6215528 chrX 6215613 6215646 7 126 11.5 9.0 10.2 0.6 143 chrX 6215503 intergenic not near genes chrX 6215574 intergenic not near genes chrX 6215646 intergenic not near genes chrX_7_6215001 chrX_6215001 RAL-361 4119 chrX 6320019 6320052 chrX 6320177 6320210 13 158 12.0 9.5 10.8 1.1 191 chrX 6320019 intron CG15894 + chrX 6320114 intron CG15894 + chrX 6320210 intron CG15894 + chrX_13_6320001 chrX_6320001 RAL-361 4120 chrX 6320060 6320077 chrX 6320165 6320235 6 149 8.5 6.5 7.5 0.7 175 chrX 6320060 intron CG15894 + chrX 6320148 intron CG15894 + chrX 6320235 intron CG15894 + chrX_6_6320001 chrX_6320001 RAL-361 4121 chrX 6335220 6335226 chrX 6337778 6337786 Tirant 6 2560 0.0 14.0 7.0 0.8 2566 chrX 6335220 intergenic not near genes chrX 6336503 intergenic not near genes chrX 6337786 5` UTR CG3842 + chrX_6_6335001 chrX_6335001 RAL-361 4122 chrX 6335230 6335240 chrX 6337757 6337800 Tirant 7 2555 0.0 10.5 5.2 1.1 2570 chrX 6335230 intergenic not near genes chrX 6336515 intergenic not near genes chrX 6337800 5` UTR CG3842 + chrX_7_6335001 chrX_6335001 RAL-361 4123 chrX 6392830 6392895 chrX 6397645 6397710 Doc 17 4814 3.5 8.0 5.8 2.5 4880 chrX 6392830 intergenic not near genes chrX 6395270 intergenic not near genes chrX 6397710 intergenic not near genes chrX_17_6395001 chrX_6395001 RAL-361 4124 chrX 6398507 6398525 chrX 6398636 6398654 7 128 16.0 5.5 10.8 0.6 147 chrX 6398507 intergenic not near genes chrX 6398580 intergenic not near genes chrX 6398654 intergenic not near genes chrX_7_6395001 chrX_6395001 RAL-361 4125 chrX 6398531 6398571 chrX 6398635 6398700 15 122 3.5 5.0 4.2 2.9 169 chrX 6398531 intergenic not near genes chrX 6398616 intergenic not near genes chrX 6398700 intergenic not near genes chrX_15_6395001 chrX_6395001 RAL-361 4126 chrX 6413495 6413552 chrX 6413979 6414020 15 482 9.0 0.0 4.5 2.7 525 chrX 6413495 intergenic not near genes chrX 6413758 intergenic not near genes chrX 6414020 intergenic not near genes chrX_15_6410001 chrX_6410001 RAL-361 4127 chrX 6429961 6429994 chrX 6435478 6435511 Rt1c 10 5517 13.0 16.5 14.8 0.6 5550 chrX 6429961 intron CG42340 - chrX 6432736 intron CG42340 - chrX 6435511 intron CG42340 - chrX_10_6430001 chrX_6430001 RAL-361 4128 chrX 6445262 6445332 chrX 6451070 6451140 297 8 5808 6.0 4.5 5.2 1.3 5878 chrX 6445262 intron CG42340 - chrX 6448201 intron CG42340 - chrX 6451140 intron CG42340 - chrX_8_6445001 chrX_6445001 RAL-361 4129 chrX 6562777 6562843 chrX 6571308 6571374 Tirant 20 8526 9.0 4.5 6.8 2.6 8597 chrX 6562777 intron CG34417 + chrX 6567076 intron CG34417 + chrX 6571374 intron CG34417 + chrX_20_6565001 chrX_6565001 RAL-361 4130 chrX 6591804 6591851 chrX 6591939 6591986 22 135 13.0 0.0 6.5 2.9 182 chrX 6591804 intron Pat1 + chrX 6591895 intron Pat1 + chrX 6591986 intron Pat1 + chrX_22_6590001 chrX_6590001 RAL-361 4131 chrX 6605482 6605487 chrX 6608546 6608551 Burdock 4 3064 12.0 1.0 6.5 0.5 3069 chrX 6605482 intron pigs + chrX 6607016 intron pigs + chrX 6608551 intron pigs + chrX_4_6605001 chrX_6605001 RAL-361 4132 chrX 6618425 6618473 chrX 6618553 6618601 17 128 10.5 12.5 11.5 1.4 176 chrX 6618425 intron pigs + chrX 6618513 intron pigs + chrX 6618601 intron pigs + chrX_17_6615001 chrX_6615001 RAL-361 4133 chrX 6629747 6629791 chrX 6629884 6629928 15 137 7.5 6.5 7.0 1.9 181 chrX 6629747 intron pigs + chrX 6629838 intron pigs + chrX 6629928 intron pigs + chrX_15_6625001 chrX_6625001 RAL-361 4134 chrX 6733640 6733669 chrX 6733779 6733808 7 137 9.5 14.0 11.8 0.5 168 chrX 6733640 intron,intron CG3168 -,CR43461 + chrX 6733724 intron,intron CG3168 -,CR43461 + chrX 6733808 intron,intron CG3168 -,CR43461 + chrX_7_6730001 chrX_6730001 RAL-361 4135 chrX 6791363 6791384 chrX 6791496 6791497 7 126 14.0 16.5 15.2 0.4 134 chrX 6791363 intron C3G - chrX 6791430 intron C3G - chrX 6791497 intron C3G - chrX_7_6790001 chrX_6790001 RAL-361 4136 chrX 6814235 6814269 chrX 6814363 6814397 7 128 9.0 3.0 6.0 1.0 162 chrX 6814235 exon iav + chrX 6814316 intron iav + chrX 6814397 intron iav + chrX_7_6810001 chrX_6810001 RAL-361 4137 chrX 6865739 6865794 chrX 6865870 6865928 20 133 9.0 5.0 7.0 2.5 189 chrX 6865739 intron CG14434 - chrX 6865834 intron CG14434 - chrX 6865928 intron CG14434 - chrX_20_6865001 chrX_6865001 RAL-361 4138 chrX 6897345 6897569 chrX 6897580 6897697 13 218 0.0 0.0 0.0 13.0 352 chrX 6897345 intergenic not near genes chrX 6897521 intergenic not near genes chrX 6897697 intergenic not near genes chrX_13_6895001 chrX_6895001 RAL-361 4139 chrX 6897644 6897656 chrX 6897804 6897816 5 160 0.0 8.5 4.2 1.0 172 chrX 6897644 intergenic not near genes chrX 6897730 intergenic not near genes chrX 6897816 intergenic not near genes chrX_5_6895001 chrX_6895001 RAL-361 4140 chrX 6897657 6897702 chrX 6897800 6897862 12 157 0.0 8.5 4.2 2.3 205 chrX 6897657 intergenic not near genes chrX 6897760 intergenic not near genes chrX 6897862 intergenic not near genes chrX_12_6895001 chrX_6895001 RAL-361 4141 chrX 6901330 6901379 chrX 6901456 6901505 15 123 7.0 9.0 8.0 1.7 175 chrX 6901330 intergenic not near genes chrX 6901418 intergenic not near genes chrX 6901505 intergenic not near genes chrX_15_6900001 chrX_6900001 RAL-361 4142 chrX 6989478 6989531 chrX 6989605 6989668 22 136 7.0 10.0 8.5 2.3 190 chrX 6989478 intron ogre - chrX 6989573 intron ogre - chrX 6989668 intron ogre - chrX_22_6985001 chrX_6985001 RAL-361 4143 chrX 7023560 7023634 chrX 7031000 7031029 Tabor 21 7437 6.0 4.5 5.2 3.4 7469 chrX 7023560 intron CG12541 - chrX 7027294 intron CG12541 - chrX 7031029 intron CG12541 - chrX_21_7025001 chrX_7025001 RAL-361 4144 chrX 7101416 7101496 chrX 7101780 7101860 18 362 4.0 3.0 3.5 4.0 444 chrX 7101416 intron CG4615 - chrX 7101638 intron CG4615 - chrX 7101860 intron CG4615 - chrX_18_7100001 chrX_7100001 RAL-361 4145 chrX 7125220 7125231 chrX 7134429 7134440 roo 6 9209 0.0 7.0 3.5 1.3 9220 chrX 7125220 intergenic not near genes chrX 7129830 intergenic not near genes chrX 7134440 intergenic not near genes chrX_6_7125001 chrX_7125001 RAL-361 4146 chrX 7125233 7125267 chrX 7134427 7134476 roo 7 9204 0.5 7.0 3.8 1.5 9243 chrX 7125233 intergenic not near genes chrX 7129854 intergenic not near genes chrX 7134476 intergenic not near genes chrX_7_7125001 chrX_7125001 RAL-361 4147 chrX 7235508 7235542 chrX 7235645 7235679 10 136 7.0 8.0 7.5 1.2 171 chrX 7235508 intron,intron CG9650 +,CR44357 - chrX 7235594 intron,intron CG9650 +,CR44357 - chrX 7235679 intron,intron CG9650 +,CR44357 - chrX_10_7235001 chrX_7235001 RAL-361 4148 chrX 7455466 7455522 chrX 7455592 7455648 6 126 4.5 4.0 4.2 1.2 182 chrX 7455466 intergenic not near genes chrX 7455557 intergenic not near genes chrX 7455648 intergenic not near genes chrX_6_7455001 chrX_7455001 RAL-361 4149 chrX 7470180 7470224 chrX 7470318 7470362 15 138 7.5 8.5 8.0 1.7 182 chrX 7470180 intergenic not near genes chrX 7470271 intergenic not near genes chrX 7470362 intergenic not near genes chrX_15_7470001 chrX_7470001 RAL-361 4150 chrX 7584144 7584193 chrX 7584283 7584332 8 139 4.5 0.0 2.2 2.5 188 chrX 7584144 intergenic not near genes chrX 7584238 intergenic not near genes chrX 7584332 intergenic not near genes chrX_8_7580001 chrX_7580001 RAL-361 4151 chrX 7621904 7621977 chrX 7622086 7622159 26 181 3.0 7.5 5.2 4.2 255 chrX 7621904 intron ct + chrX 7622032 intron ct + chrX 7622159 intron ct + chrX_26_7620001 chrX_7620001 RAL-361 4152 chrX 7637689 7637713 chrX 7637816 7637824 4 120 7.0 9.5 8.2 0.4 135 chrX 7637689 intron ct + chrX 7637756 intron ct + chrX 7637824 intron ct + chrX_4_7635001 chrX_7635001 RAL-361 4153 chrX 7702449 7702523 chrX 7702603 7702665 9 147 0.0 7.0 3.5 2.0 216 chrX 7702449 intron CHES-1-like - chrX 7702557 intron CHES-1-like - chrX 7702665 intron CHES-1-like - chrX_9_7700001 chrX_7700001 RAL-361 4154 chrX 7702863 7702923 chrX 7703352 7703412 jockey 21 488 7.0 11.5 9.2 2.1 549 chrX 7702863 intron CHES-1-like - chrX 7703138 intron CHES-1-like - chrX 7703412 intron CHES-1-like - chrX_21_7700001 chrX_7700001 RAL-361 4155 chrX 7737079 7737148 chrX 7737241 7737310 13 162 5.5 5.0 5.2 2.1 231 chrX 7737079 5` UTR Tom40 + chrX 7737194 intron Tom40 + chrX 7737310 intron Tom40 + chrX_13_7735001 chrX_7735001 RAL-361 4156 chrX 7832391 7832464 chrX 7832530 7832573 31 138 5.5 6.5 6.0 4.4 182 chrX 7832391 intron CG1402 + chrX 7832482 intron CG1402 + chrX 7832573 intron CG1402 + chrX_31_7830001 chrX_7830001 RAL-361 4157 chrX 7844937 7845017 chrX 7847714 7847788 hopper2 16 2774 35.0 9.0 22.0 0.7 2851 chrX 7844937 intergenic not near genes chrX 7846362 intergenic not near genes chrX 7847788 intergenic not near genes chrX_16_7845001 chrX_7845001 RAL-361 4158 chrX 7845683 7845704 chrX 7847224 7847245 hopper2 6 1540 18.5 7.0 12.8 0.4 1562 chrX 7845683 intergenic not near genes chrX 7846464 intergenic not near genes chrX 7847245 intergenic not near genes chrX_6_7845001 chrX_7845001 RAL-361 4159 chrX 7845705 7845752 chrX 7847222 7847293 hopper2 16 1539 9.0 6.5 7.8 1.8 1588 chrX 7845705 intergenic not near genes chrX 7846499 intergenic not near genes chrX 7847293 intergenic not near genes chrX_16_7845001 chrX_7845001 RAL-361 4160 chrX 7844759 7844772 chrX 7848154 7848215 hopper2 15 3393 36.5 37.0 36.8 0.4 3456 chrX 7844759 intergenic not near genes chrX 7846487 intergenic not near genes chrX 7848215 intergenic not near genes chrX_15_7845001 chrX_7845001 RAL-361 4161 chrX 7921533 7921545 chrX 7921668 7921681 4 134 13.5 6.0 9.8 0.4 148 chrX 7921533 3` UTR Ykt6 + chrX 7921607 3` UTR Ykt6 + chrX 7921681 3` UTR Ykt6 + chrX_4_7920001 chrX_7920001 RAL-361 4162 chrX 7999416 7999456 chrX 7999543 7999572 8 124 8.0 7.0 7.5 0.9 156 chrX 7999416 exon Tbh + chrX 7999494 exon Tbh + chrX 7999572 exon Tbh + chrX_8_7995001 chrX_7995001 RAL-361 4163 chrX 8031400 8031415 chrX 8035759 8035774 Juan 6 4358 7.0 20.0 13.5 0.4 4374 chrX 8031400 intergenic not near genes chrX 8033587 intergenic not near genes chrX 8035774 3` UTR CG2233 - chrX_6_8030001 chrX_8030001 RAL-361 4164 chrX 8031416 8031452 chrX 8035758 8035811 Juan 13 4357 7.5 18.5 13.0 0.9 4395 chrX 8031416 intergenic not near genes chrX 8033614 intergenic not near genes chrX 8035811 3` UTR CG2233 - chrX_13_8030001 chrX_8030001 RAL-361 4165 chrX 8035794 8035802 chrX 8039872 8039880 4 4079 37.0 20.5 28.8 0.1 4086 chrX 8035794 3` UTR CG2233 - chrX 8037837 3` UTR fs(1)h - chrX 8039880 3` UTR fs(1)h - chrX_4_8035001 chrX_8035001 RAL-361 4166 chrX 8063683 8063763 chrX 8063832 8063900 15 146 5.0 2.0 3.5 3.3 217 chrX 8063683 intron mys + chrX 8063792 intron mys + chrX 8063900 5` UTR mys + chrX_15_8060001 chrX_8060001 RAL-361 4167 chrX 8083507 8083530 chrX 8083634 8083657 9 127 11.5 18.5 15.0 0.6 150 chrX 8083507 intergenic not near genes chrX 8083582 intergenic CG2256 - chrX 8083657 intergenic CG2256 - chrX_9_8080001 chrX_8080001 RAL-361 4168 chrX 8085525 8085533 chrX 8085661 8085669 7 136 15.0 8.0 11.5 0.6 144 chrX 8085525 intron,5` UTR CG2256 -,CR45535 + chrX 8085597 intron,5` UTR CG2256 -,CR45535 + chrX 8085669 intron,5` UTR CG2256 -,CR45535 + chrX_7_8085001 chrX_8085001 RAL-361 4169 chrX 8085537 8085598 chrX 8085660 8085734 22 135 4.0 8.0 6.0 3.1 197 chrX 8085537 intron,5` UTR CG2256 -,CR45535 + chrX 8085636 intron,5` UTR CG2256 -,CR45535 + chrX 8085734 intron,5` UTR CG2256 -,CR45535 + chrX_22_8085001 chrX_8085001 RAL-361 4170 chrX 8327243 8327268 chrX 8327372 8327397 13 128 7.0 14.0 10.5 1.1 154 chrX 8327243 intron nAChRalpha3 - chrX 8327320 intron nAChRalpha3 - chrX 8327397 intron nAChRalpha3 - chrX_13_8325001 chrX_8325001 RAL-361 4171 chrX 8371125 8371170 chrX 8371318 8371368 10 197 5.5 3.0 4.2 1.9 243 chrX 8371125 intergenic not near genes chrX 8371246 intergenic not near genes chrX 8371368 intergenic not near genes chrX_10_8370001 chrX_8370001 RAL-361 4172 chrX 8377867 8377897 chrX 8377994 8378024 9 127 10.5 7.0 8.8 0.9 157 chrX 8377867 intergenic not near genes chrX 8377946 intergenic not near genes chrX 8378024 intergenic not near genes chrX_9_8375001 chrX_8375001 RAL-361 4173 chrX 8505984 8506053 chrX 8506112 8506181 16 128 9.0 8.0 8.5 1.7 197 chrX 8505984 intron CG33181 + chrX 8506082 intron CG33181 + chrX 8506181 intron CG33181 + chrX_16_8505001 chrX_8505001 RAL-361 4174 chrX 8506485 8506559 chrX 8506743 8506817 25 258 5.5 8.0 6.8 3.2 332 chrX 8506485 intron CG33181 + chrX 8506651 intron CG33181 + chrX 8506817 intron CG33181 + chrX_25_8505001 chrX_8505001 RAL-361 4175 chrX 8509069 8509150 chrX 8509196 8509277 20 127 0.5 5.5 3.0 5.0 208 chrX 8509069 intron CG33181 + chrX 8509173 intron CG33181 + chrX 8509277 intron CG33181 + chrX_20_8505001 chrX_8505001 RAL-361 4176 chrX 8511518 8511576 chrX 8511677 8511735 17 157 10.0 7.5 8.8 1.7 217 chrX 8511518 intron CG33181 + chrX 8511626 intron CG33181 + chrX 8511735 intron CG33181 + chrX_17_8510001 chrX_8510001 RAL-361 4177 chrX 8573097 8573148 chrX 8573237 8573288 26 140 5.0 7.5 6.2 3.6 191 chrX 8573097 intron spirit - chrX 8573192 intron spirit - chrX 8573288 intron spirit - chrX_26_8570001 chrX_8570001 RAL-361 4178 chrX 8605266 8605338 chrX 8605393 8605440 24 124 7.0 7.5 7.2 2.9 174 chrX 8605266 exon Caf1-180 - chrX 8605353 exon Caf1-180 - chrX 8605440 exon Caf1-180 - chrX_24_8605001 chrX_8605001 RAL-361 4179 chrX 8708689 8708768 chrX 8708822 8708901 34 134 41.5 37.5 39.5 0.8 212 chrX 8708689 intergenic not near genes chrX 8708795 intergenic not near genes chrX 8708901 intergenic not near genes chrX_34_8705001 chrX_8705001 RAL-361 4180 chrX 8727349 8727421 chrX 8727476 8727548 12 127 2.0 9.5 5.8 1.8 199 chrX 8727349 intergenic not near genes chrX 8727448 intergenic not near genes chrX 8727548 intergenic not near genes chrX_12_8725001 chrX_8725001 RAL-361 4181 chrX 8772211 8772237 chrX 8772340 8772366 12 128 9.0 12.0 10.5 1.0 155 chrX 8772211 intron Lim1 - chrX 8772288 intron Lim1 - chrX 8772366 intron Lim1 - chrX_12_8770001 chrX_8770001 RAL-361 4182 chrX 8772245 8772247 chrX 8772338 8772376 5 120 7.5 12.0 9.8 0.5 131 chrX 8772245 intron Lim1 - chrX 8772310 intron Lim1 - chrX 8772376 intron Lim1 - chrX_5_8770001 chrX_8770001 RAL-361 4183 chrX 8856899 8856925 chrX 8857068 8857094 8 169 16.0 5.0 10.5 0.7 195 chrX 8856899 intron CG12075 + chrX 8856996 intron CG12075 + chrX 8857094 intron CG12075 + chrX_8_8855001 chrX_8855001 RAL-361 4184 chrX 8856931 8856974 chrX 8857060 8857078 10 157 5.0 4.0 4.5 1.8 147 chrX 8856931 intron CG12075 + chrX 8857004 intron CG12075 + chrX 8857078 intron CG12075 + chrX_10_8855001 chrX_8855001 RAL-361 4185 chrX 8920911 8920942 chrX 8921044 8921075 8 133 9.0 9.0 9.0 0.8 164 chrX 8920911 intron rdgA + chrX 8920993 intron rdgA + chrX 8921075 intron rdgA + chrX_8_8920001 chrX_8920001 RAL-361 4186 chrX 8922289 8922352 chrX 8922773 8922836 jockey 25 481 11.5 12.5 12.0 1.9 547 chrX 8922289 intron rdgA + chrX 8922562 intron rdgA + chrX 8922836 intron rdgA + chrX_25_8920001 chrX_8920001 RAL-361 4187 chrX 8944858 8944925 chrX 8945135 8945202 24 275 5.0 7.5 6.2 3.3 344 chrX 8944858 intron rdgA + chrX 8945030 intron rdgA + chrX 8945202 intron rdgA + chrX_24_8945001 chrX_8945001 RAL-361 4188 chrX 8948714 8948785 chrX 8956273 8956345 roo 16 7560 0.0 6.0 3.0 4.0 7631 chrX 8948714 intron rdgA + chrX 8952530 intron rdgA + chrX 8956345 intron rdgA + chrX_16_8950001 chrX_8950001 RAL-361 4189 chrX 9041954 9041975 chrX 9042111 9042132 12 157 0.0 6.0 3.0 3.0 178 chrX 9041954 intron,intron CR43836 -,CG42388 + chrX 9042043 intron,intron CR43836 -,CG42388 + chrX 9042132 intron,intron CR43836 -,CG42388 + chrX_12_9040001 chrX_9040001 RAL-361 4190 chrX 9058902 9058912 chrX 9059029 9059039 4 127 20.0 9.0 14.5 0.3 137 chrX 9058902 intron CG15365 - chrX 9058970 intron CG15365 - chrX 9059039 intron CG15365 - chrX_4_9055001 chrX_9055001 RAL-361 4191 chrX 9058918 9058955 chrX 9059028 9059052 6 106 13.5 8.5 11.0 0.5 134 chrX 9058918 intron CG15365 - chrX 9058985 intron CG15365 - chrX 9059052 intron CG15365 - chrX_6_9055001 chrX_9055001 RAL-361 4192 chrX 9062682 9062732 chrX 9062810 9062860 17 127 0.0 0.0 0.0 17.0 178 chrX 9062682 intron CG15365 - chrX 9062771 intron CG15365 - chrX 9062860 intron CG15365 - chrX_17_9060001 chrX_9060001 RAL-361 4193 chrX 9152034 9152097 chrX 9152167 9152230 20 131 8.0 5.0 6.5 2.7 196 chrX 9152034 intergenic dalao +,His3.3B - chrX 9152132 intergenic dalao +,His3.3B - chrX 9152230 intergenic dalao +,His3.3B - chrX_20_9150001 chrX_9150001 RAL-361 4194 chrX 9190748 9190785 chrX 9190891 9190928 9 141 15.0 14.0 14.5 0.6 180 chrX 9190748 intergenic CG12115 - chrX 9190838 intergenic CG12115 - chrX 9190928 intergenic CG12115 - chrX_9_9190001 chrX_9190001 RAL-361 4195 chrX 9218036 9218090 chrX 9218177 9218231 8 141 10.5 5.0 7.8 0.9 195 chrX 9218036 3` UTR t - chrX 9218134 3` UTR t - chrX 9218231 3` UTR t - chrX_8_9215001 chrX_9215001 RAL-361 4196 chrX 9337910 9337966 chrX 9338042 9338108 18 139 5.0 6.5 5.8 2.6 198 chrX 9337910 intron CG34449 - chrX 9338009 intron CG34449 - chrX 9338108 exon CG34449 - chrX_18_9335001 chrX_9335001 RAL-361 4197 chrX 9508095 9508158 chrX 9509663 9509726 jockey 24 1567 11.5 10.5 11.0 2.0 1631 chrX 9508095 intron CG32700 - chrX 9508910 intron CG32700 - chrX 9509726 intron CG32700 - chrX_24_9505001 chrX_9505001 RAL-361 4198 chrX 9543348 9543419 chrX 9543477 9543548 19 129 8.5 8.5 8.5 2.0 200 chrX 9543348 intron CG32700 - chrX 9543448 intron CG32700 - chrX 9543548 intron CG32700 - chrX_19_9540001 chrX_9540001 RAL-361 4199 chrX 9575749 9575769 chrX 9576121 9576143 mdg3 7 371 12.5 9.5 11.0 0.6 394 chrX 9575749 intron,exon CG32699 -,CG42395 - chrX 9575946 intron,intron CG32699 -,CG42395 - chrX 9576143 intron,5` UTR CG32699 -,CG42395 - chrX_7_9575001 chrX_9575001 RAL-361 4200 chrX 9575771 9575816 chrX 9576114 9576185 mdg3 18 368 4.0 9.5 6.8 2.3 414 chrX 9575771 intron,exon CG32699 -,CG42395 - chrX 9575978 intron,intron CG32699 -,CG42395 - chrX 9576185 intron,5` UTR CG32699 -,CG42395 - chrX_18_9575001 chrX_9575001 RAL-361 4201 chrX 9732332 9732382 chrX 9732458 9732514 6 128 2.5 7.5 5.0 1.0 182 chrX 9732332 intron Sp1 + chrX 9732423 intron Sp1 + chrX 9732514 intron Sp1 + chrX_6_9730001 chrX_9730001 RAL-361 4202 chrX 9758006 9758044 chrX 9758168 9758219 8 174 6.0 2.0 4.0 1.6 213 chrX 9758006 intergenic not near genes chrX 9758112 intergenic not near genes chrX 9758219 intergenic not near genes chrX_8_9755001 chrX_9755001 RAL-361 4203 chrX 9839301 9839370 chrX 9839434 9839458 13 129 0.0 9.0 4.5 2.4 157 chrX 9839301 intron CG32698 + chrX 9839380 intron CG32698 + chrX 9839458 intron CG32698 + chrX_13_9835001 chrX_9835001 RAL-361 4204 chrX 9961031 9961111 chrX 9961166 9961201 22 132 4.0 11.0 7.5 2.6 170 chrX 9961031 intergenic not near genes chrX 9961116 intergenic not near genes chrX 9961201 intergenic not near genes chrX_22_9960001 chrX_9960001 RAL-361 4205 chrX 9988472 9988517 chrX 9988626 9988671 13 154 6.0 4.0 5.0 2.2 199 chrX 9988472 intergenic not near genes chrX 9988572 intergenic not near genes chrX 9988671 intergenic not near genes chrX_13_9985001 chrX_9985001 RAL-361 4206 chrX 10138173 10138242 chrX 10145727 10145795 412 21 7554 5.0 6.5 5.8 3.1 7622 chrX 10138173 intron,intron RhoU +,CR44894 - chrX 10141984 intron,intron RhoU +,CR44894 - chrX 10145795 intron,intron RhoU +,CR44894 - chrX_21_10140001 chrX_10140001 RAL-361 4207 chrX 10151874 10151938 chrX 10152001 10152065 15 123 6.5 9.0 7.8 1.7 191 chrX 10151874 intron CR44894 - chrX 10151970 intron CR44894 - chrX 10152065 intron CR44894 - chrX_15_10150001 chrX_10150001 RAL-361 4208 chrX 10216797 10216849 chrX 10216928 10216977 18 127 12.0 10.0 11.0 1.5 180 chrX 10216797 3` UTR l(1)G0230 + chrX 10216887 3` UTR l(1)G0230 + chrX 10216977 3` UTR l(1)G0230 + chrX_18_10215001 chrX_10215001 RAL-361 4209 chrX 10267297 10267327 chrX 10276497 10276527 roo 10 9200 0.0 12.0 6.0 1.4 9230 chrX 10267297 3` UTR alpha-Man-I - chrX 10271912 intron alpha-Man-I - chrX 10276527 3` UTR alpha-Man-I - chrX_10_10270001 chrX_10270001 RAL-361 4210 chrX 10285838 10285906 chrX 10286224 10286292 17 383 6.5 3.0 4.8 2.9 454 chrX 10285838 intron alpha-Man-I - chrX 10286065 intron alpha-Man-I - chrX 10286292 intron alpha-Man-I - chrX_17_10285001 chrX_10285001 RAL-361 4211 chrX 10306018 10306081 chrX 10306149 10306215 7 132 6.0 0.0 3.0 1.8 197 chrX 10306018 intron alpha-Man-I - chrX 10306116 intron alpha-Man-I - chrX 10306215 intron alpha-Man-I - chrX_7_10305001 chrX_10305001 RAL-361 4212 chrX 10317526 10317582 chrX 10317633 10317710 25 127 1.5 7.0 4.2 4.8 184 chrX 10317526 intron alpha-Man-I - chrX 10317618 intron alpha-Man-I - chrX 10317710 intron alpha-Man-I - chrX_25_10315001 chrX_10315001 RAL-361 4213 chrX 10348762 10348814 chrX 10356367 10356429 springer 14 7614 12.0 8.0 10.0 1.3 7667 chrX 10348762 intergenic snoRNA:U3:9B + chrX 10352596 intergenic not near genes chrX 10356429 intergenic l(1)G0289 - chrX_14_10350001 chrX_10350001 RAL-361 4214 chrX 10446636 10446709 chrX 10446768 10446816 26 130 2.0 7.0 4.5 4.7 180 chrX 10446636 intron CG32683 - chrX 10446726 intron CG32683 - chrX 10446816 intron CG32683 - chrX_26_10445001 chrX_10445001 RAL-361 4215 chrX 10453026 10453097 chrX 10453267 10453318 27 240 2.0 7.5 4.8 4.7 292 chrX 10453026 intron CG32683 - chrX 10453172 intron CG32683 - chrX 10453318 intron CG32683 - chrX_27_10450001 chrX_10450001 RAL-361 4216 chrX 10525020 10525076 chrX 10532141 10532197 297 13 7120 11.5 5.5 8.5 1.4 7177 chrX 10525020 intron spri - chrX 10528608 intron spri - chrX 10532197 intron spri - chrX_13_10525001 chrX_10525001 RAL-361 4217 chrX 10550289 10550359 chrX 10550417 10550487 34 128 7.5 6.5 7.0 4.2 198 chrX 10550289 intron spri - chrX 10550388 intron spri - chrX 10550487 intron spri - chrX_34_10550001 chrX_10550001 RAL-361 4218 chrX 10550831 10550883 chrX 10552326 10552381 hobo 10 1509 5.0 6.5 5.8 1.5 1550 chrX 10550831 intron spri - chrX 10551606 intron spri - chrX 10552381 intron spri - chrX_10_10550001 chrX_10550001 RAL-361 4219 chrX 10686012 10686065 chrX 10691199 10691252 roo 19 5187 8.5 10.0 9.2 1.9 5240 chrX 10686012 intron X11Lbeta + chrX 10688632 intron X11Lbeta + chrX 10691252 intron X11Lbeta + chrX_19_10685001 chrX_10685001 RAL-361 4220 chrX 10719072 10719138 chrX 10719212 10719272 10 134 0.0 7.0 3.5 2.2 200 chrX 10719072 intron CG32676 - chrX 10719172 intron CG32676 - chrX 10719272 intron CG32676 - chrX_10_10715001 chrX_10715001 RAL-361 4221 chrX 10772631 10772697 chrX 10772763 10772814 Tirant 16 128 10.5 8.0 9.2 1.6 183 chrX 10772631 intron CG15211 + chrX 10772722 intron CG15211 + chrX 10772814 intron CG15211 + chrX_16_10770001 chrX_10770001 RAL-361 4222 chrX 10802993 10803011 chrX 10803128 10803145 10 134 15.0 11.5 13.2 0.7 152 chrX 10802993 intron Imp - chrX 10803069 intron Imp - chrX 10803145 intron Imp - chrX_10_10800001 chrX_10800001 RAL-361 4223 chrX 10803015 10803039 chrX 10803126 10803174 11 133 12.5 10.5 11.5 0.9 159 chrX 10803015 intron Imp - chrX 10803094 intron Imp - chrX 10803174 intron Imp - chrX_11_10800001 chrX_10800001 RAL-361 4224 chrX 10803040 10803044 chrX 10803122 10803179 5 124 10.0 9.0 9.5 0.5 139 chrX 10803040 intron Imp - chrX 10803110 intron Imp - chrX 10803179 intron Imp - chrX_5_10800001 chrX_10800001 RAL-361 4225 chrX 10876568 10876648 chrX 10876696 10876776 14 125 9.5 5.5 7.5 1.6 208 chrX 10876568 intron CG1637 - chrX 10876672 intron CG1637 - chrX 10876776 intron CG1637 - chrX_14_10875001 chrX_10875001 RAL-361 4226 chrX 10974273 10974303 chrX 10974399 10974429 6 126 6.5 13.0 9.8 0.6 156 chrX 10974273 intron CG42339 - chrX 10974351 intron CG42339 - chrX 10974429 intron CG42339 - chrX_6_10970001 chrX_10970001 RAL-361 4227 chrX 11062399 11062470 chrX 11062544 11062615 21 145 4.5 8.0 6.2 2.9 216 chrX 11062399 exon CG1537 - chrX 11062507 intron CG1537 - chrX 11062615 intron CG1537 - chrX_21_11060001 chrX_11060001 RAL-361 4228 chrX 11095959 11096018 chrX 11103111 11103170 HMS-Beagle 26 7152 12.0 11.5 11.8 2.0 7211 chrX 11095959 intergenic not near genes chrX 11099564 intergenic not near genes chrX 11103170 intron CG42249 + chrX_26_11095001 chrX_11095001 RAL-361 4229 chrX 11109417 11109417 chrX 12946234 12946235 6 1836817 26.0 28.0 27.0 0.2 1836818 chrX 11109417 intron Hsp60 + chrX 12027826 exon Usp7 - chrX 12946235 3` UTR fne + chrX_6_12025001 chrX_12025001 RAL-361 4230 chrX 11165830 11165899 chrX 11166212 11166281 8 381 5.0 6.0 5.5 1.2 451 chrX 11165830 intergenic not near genes chrX 11166056 intergenic not near genes chrX 11166281 intergenic not near genes chrX_8_11165001 chrX_11165001 RAL-361 4231 chrX 11184212 11184264 chrX 11189338 11189390 flea 7 5126 6.0 9.5 7.8 0.8 5178 chrX 11184212 intergenic not near genes chrX 11186801 intergenic not near genes chrX 11189390 intergenic not near genes chrX_7_11185001 chrX_11185001 RAL-361 4232 chrX 11268535 11268547 chrX 11270078 11270089 hopper2 6 1543 0.0 8.5 4.2 1.2 1554 chrX 11268535 intron CG44422 - chrX 11269312 intron CG44422 - chrX 11270089 intron CG44422 - chrX_6_11265001 chrX_11265001 RAL-361 4233 chrX 11268551 11268594 chrX 11270076 11270136 hopper2 13 1538 0.0 8.0 4.0 2.6 1585 chrX 11268551 intron CG44422 - chrX 11269344 intron CG44422 - chrX 11270136 intron CG44422 - chrX_13_11265001 chrX_11265001 RAL-361 4234 chrX 11312028 11312047 chrX 11319431 11319450 Stalker2 7 7401 15.5 7.5 11.5 0.6 7422 chrX 11312028 intergenic not near genes chrX 11315739 intergenic not near genes chrX 11319450 intergenic not near genes chrX_7_11315001 chrX_11315001 RAL-361 4235 chrX 11312053 11312082 chrX 11319426 11319485 Stalker2 14 7396 9.0 7.5 8.2 1.5 7432 chrX 11312053 intergenic not near genes chrX 11315769 intergenic not near genes chrX 11319485 intergenic not near genes chrX_14_11315001 chrX_11315001 RAL-361 4236 chrX 11534999 11535046 chrX 11541519 11541561 Burdock 12 6519 9.5 8.5 9.0 1.2 6562 chrX 11534999 intron Drak + chrX 11538280 intron Drak + chrX 11541561 intron Drak + chrX_12_11535001 chrX_11535001 RAL-361 4237 chrX 11633374 11633442 chrX 11640478 11640546 297 25 7104 11.0 9.5 10.2 2.2 7172 chrX 11633374 intron Ptp10D + chrX 11636960 intron Ptp10D + chrX 11640546 intron Ptp10D + chrX_25_11635001 chrX_11635001 RAL-361 4238 chrX 11645066 11645130 chrX 11648286 11648350 NOF 21 3220 7.5 6.5 7.0 2.6 3284 chrX 11645066 intron Ptp10D + chrX 11646708 intron Ptp10D + chrX 11648350 intron Ptp10D + chrX_21_11645001 chrX_11645001 RAL-361 4239 chrX 11661741 11661797 chrX 11661899 11661945 23 157 10.5 1.5 6.0 3.3 204 chrX 11661741 intron Ptp10D + chrX 11661843 intron Ptp10D + chrX 11661945 intron Ptp10D + chrX_23_11660001 chrX_11660001 RAL-361 4240 chrX 11661802 11661811 chrX 11661960 11661969 5 158 7.0 1.5 4.2 1.0 167 chrX 11661802 intron Ptp10D + chrX 11661886 intron Ptp10D + chrX 11661969 intron Ptp10D + chrX_5_11660001 chrX_11660001 RAL-361 4241 chrX 11782897 11782916 chrX 11783027 11783046 5 130 9.0 17.5 13.2 0.4 149 chrX 11782897 intergenic not near genes chrX 11782972 intergenic not near genes chrX 11783046 intergenic not near genes chrX_5_11780001 chrX_11780001 RAL-361 4242 chrX 11798983 11799027 chrX 11799108 11799163 16 135 12.5 7.0 9.8 1.5 180 chrX 11798983 intron CkIIbeta + chrX 11799073 intron CkIIbeta + chrX 11799163 intron CkIIbeta + chrX_16_11795001 chrX_11795001 RAL-361 4243 chrX 11804631 11804685 chrX 11804785 11804839 23 153 7.5 9.5 8.5 2.4 208 chrX 11804631 intron Hsc70-3 - chrX 11804735 intron Hsc70-3 - chrX 11804839 intron Hsc70-3 - chrX_23_11800001 chrX_11800001 RAL-361 4244 chrX 11922315 11922383 chrX 11922498 11922566 23 181 7.0 8.0 7.5 2.7 251 chrX 11922315 exon Sclp - chrX 11922440 intron Sclp - chrX 11922566 intron Sclp - chrX_23_11920001 chrX_11920001 RAL-361 4245 chrX 12075395 12075423 chrX 12075530 12075558 13 131 10.0 8.5 9.2 1.3 163 chrX 12075395 intron,intron CR43960 +,Ten-a + chrX 12075476 intron,intron CR43960 +,Ten-a + chrX 12075558 intron,intron CR43960 +,Ten-a + chrX_13_12075001 chrX_12075001 RAL-361 4246 chrX 12085832 12085883 chrX 12086157 12086226 23 327 39.0 43.0 41.0 0.5 394 chrX 12085832 intron,intron CR43960 +,Ten-a + chrX 12086029 intron,intron CR43960 +,Ten-a + chrX 12086226 intron,intron CR43960 +,Ten-a + chrX_23_12085001 chrX_12085001 RAL-361 4247 chrX 12094030 12094055 chrX 12094136 12094197 7 135 5.5 6.5 6.0 1.0 167 chrX 12094030 intron,intron CR43960 +,Ten-a + chrX 12094114 intron,intron CR43960 +,Ten-a + chrX 12094197 intron,intron CR43960 +,Ten-a + chrX_7_12090001 chrX_12090001 RAL-361 4248 chrX 12136417 12136446 chrX 12136548 12136577 4 131 4.0 6.0 5.0 0.7 160 chrX 12136417 intron Ten-a + chrX 12136497 intron Ten-a + chrX 12136577 intron Ten-a + chrX_4_12135001 chrX_12135001 RAL-361 4249 chrX 12168101 12168132 chrX 12173587 12173624 I-element 8 5491 9.5 2.0 5.8 1.2 5523 chrX 12168101 intron Ten-a + chrX 12170862 intron Ten-a + chrX 12173624 intron Ten-a + chrX_8_12170001 chrX_12170001 RAL-361 4250 chrX 12202725 12202788 chrX 12202859 12202922 19 133 6.0 5.0 5.5 2.9 197 chrX 12202725 intron Ten-a + chrX 12202824 intron Ten-a + chrX 12202922 intron Ten-a + chrX_19_12200001 chrX_12200001 RAL-361 4251 chrX 12207659 12207697 chrX 12207927 12207964 15 268 5.0 8.5 6.8 1.9 305 chrX 12207659 intron Ten-a + chrX 12207812 intron Ten-a + chrX 12207964 intron Ten-a + chrX_15_12205001 chrX_12205001 RAL-361 4252 chrX 12231160 12231219 chrX 12231297 12231356 19 135 4.0 5.5 4.8 3.3 196 chrX 12231160 intron Ten-a + chrX 12231258 intron Ten-a + chrX 12231356 intron Ten-a + chrX_19_12230001 chrX_12230001 RAL-361 4253 chrX 12247052 12247106 chrX 12247182 12247236 10 129 8.0 3.5 5.8 1.5 184 chrX 12247052 intron Ten-a + chrX 12247144 intron Ten-a + chrX 12247236 intron Ten-a + chrX_10_12245001 chrX_12245001 RAL-361 4254 chrX 12375443 12375513 chrX 12375591 12375661 16 147 2.5 4.5 3.5 3.6 218 chrX 12375443 intergenic Ir11a - chrX 12375552 intergenic Ir11a - chrX 12375661 exon Ir11a - chrX_16_12375001 chrX_12375001 RAL-361 4255 chrX 12381811 12381855 chrX 12385774 12385818 flea 17 3962 5.5 9.0 7.2 2.1 4007 chrX 12381811 intergenic not near genes chrX 12383814 intergenic not near genes chrX 12385818 intergenic not near genes chrX_17_12380001 chrX_12380001 RAL-361 4256 chrX 12428304 12428366 chrX 12428466 12428528 17 161 8.5 7.5 8.0 1.9 224 chrX 12428304 intergenic not near genes chrX 12428416 intergenic not near genes chrX 12428528 intergenic not near genes chrX_17_12425001 chrX_12425001 RAL-361 4257 chrX 12492949 12492960 chrX 13057292 13057303 7 564343 11.0 26.5 18.8 0.4 564354 chrX 12492949 3` UTR Lsp1alpha + chrX 12775126 3` UTR CG32647 - chrX 13057303 intron rad + chrX_7_12775001 chrX_12775001 RAL-361 4258 chrX 12496690 12496745 chrX 12496841 12496896 21 151 11.5 5.0 8.2 2.3 206 chrX 12496690 intergenic Mks1 -,CG2556 + chrX 12496793 intergenic Mks1 -,CG2556 + chrX 12496896 intergenic CG2556 +,Mks1 - chrX_21_12495001 chrX_12495001 RAL-361 4259 chrX 12505069 12505102 chrX 12505198 12505206 11 126 8.0 6.5 7.2 1.3 137 chrX 12505069 intron CG2556 + chrX 12505138 intron CG2556 + chrX 12505206 intron CG2556 + chrX_11_12505001 chrX_12505001 RAL-361 4260 chrX 12511282 12511349 chrX 12511414 12511483 13 133 0.0 5.5 2.8 3.4 201 chrX 12511282 intron CG2556 + chrX 12511382 intron CG2556 + chrX 12511483 intron CG2556 + chrX_13_12510001 chrX_12510001 RAL-361 4261 chrX 12532596 12532614 chrX 12532791 12532801 6 194 11.0 0.0 5.5 0.9 205 chrX 12532596 intron CG43921 - chrX 12532698 intron CG43921 - chrX 12532801 intron CG43921 - chrX_6_12530001 chrX_12530001 RAL-361 4262 chrX 12532621 12532671 chrX 12532790 12532842 8 171 3.5 0.0 1.8 2.9 221 chrX 12532621 intron CG43921 - chrX 12532732 intron CG43921 - chrX 12532842 intron CG43921 - chrX_8_12530001 chrX_12530001 RAL-361 4263 chrX 12535683 12535965 chrX 12535820 12536095 28 132 0.0 0.0 0.0 28.0 412 chrX 12535683 intron CG43921 - chrX 12535889 intron CG43921 - chrX 12536095 intron CG43921 - chrX_28_12535001 chrX_12535001 RAL-361 4264 chrX 12557140 12557159 chrX 12557238 12557271 6 111 8.0 11.0 9.5 0.6 131 chrX 12557140 intron CG43921 - chrX 12557206 intron CG43921 - chrX 12557271 intron CG43921 - chrX_6_12555001 chrX_12555001 RAL-361 4265 chrX 12626284 12626307 chrX 12626414 12626438 6 131 15.0 5.0 10.0 0.5 154 chrX 12626284 intron CG15728 + chrX 12626361 intron CG15728 + chrX 12626438 intron CG15728 + chrX_6_12625001 chrX_12625001 RAL-361 4266 chrX 12635401 12635429 chrX 12635536 12635564 8 135 6.0 6.5 6.2 1.1 163 chrX 12635401 intron Tomosyn + chrX 12635482 intron Tomosyn + chrX 12635564 intron Tomosyn + chrX_8_12635001 chrX_12635001 RAL-361 4267 chrX 12694023 12694095 chrX 12694288 12694365 20 270 0.0 4.5 2.2 6.2 342 chrX 12694023 intron Smr - chrX 12694194 intron Smr - chrX 12694365 intron Smr - chrX_20_12690001 chrX_12690001 RAL-361 4268 chrX 12754667 12754676 chrX 12754905 12754914 6 238 13.0 18.5 15.8 0.4 247 chrX 12754667 intergenic CR44619 + chrX 12754790 intergenic CR44619 + chrX 12754914 intergenic CR44619 + chrX_6_12750001 chrX_12750001 RAL-361 4269 chrX 12785382 12785443 chrX 12785509 12785570 19 127 7.0 11.0 9.0 1.9 188 chrX 12785382 intergenic Pde9 -,CG32647 - chrX 12785476 intergenic Pde9 - chrX 12785570 3` UTR Pde9 - chrX_19_12785001 chrX_12785001 RAL-361 4270 chrX 12808431 12808481 chrX 12808573 12808622 10 140 8.0 11.0 9.5 1.0 191 chrX 12808431 intron Pde9 - chrX 12808526 intron Pde9 - chrX 12808622 intron Pde9 - chrX_10_12805001 chrX_12805001 RAL-361 4271 chrX 12862232 12862308 chrX 12862402 12862418 17 165 5.5 0.5 3.0 4.2 186 chrX 12862232 intron Pde9 - chrX 12862325 intron Pde9 - chrX 12862418 intron Pde9 - chrX_17_12860001 chrX_12860001 RAL-361 4272 chrX 12894338 12894416 chrX 12894465 12894543 9 127 9.5 10.0 9.8 0.8 205 chrX 12894338 intron Pde9 - chrX 12894440 intron Pde9 - chrX 12894543 intron Pde9 - chrX_9_12890001 chrX_12890001 RAL-361 4273 chrX 12930549 12930595 chrX 12937715 12937761 HMS-Beagle 16 7165 7.0 13.0 10.0 1.5 7212 chrX 12930549 intron fne + chrX 12934155 intron fne + chrX 12937761 intron fne + chrX_16_12930001 chrX_12930001 RAL-361 4274 chrX 8810799 8810799 chrX 12946234 12946234 4 4135435 22.0 28.0 25.0 0.2 4135435 chrX 8810799 intergenic not near genes chrX 10878516 exon Ork1 - chrX 12946234 3` UTR fne + chrX_4_10875001 chrX_10875001 RAL-361 4275 chrX 13018471 13018528 chrX 13018605 13018662 20 134 9.5 3.0 6.2 2.8 191 chrX 13018471 intron rad + chrX 13018566 intron rad + chrX 13018662 intron rad + chrX_20_13015001 chrX_13015001 RAL-361 4276 chrX 13146561 13146628 chrX 13146699 13146766 23 138 8.0 8.5 8.2 2.5 205 chrX 13146561 intron CG32645 + chrX 13146664 intron CG32645 + chrX 13146766 intron CG32645 + chrX_23_13145001 chrX_13145001 RAL-361 4277 chrX 13299923 13299993 chrX 13300222 13300292 26 298 5.0 7.5 6.2 3.6 369 chrX 13299923 intron CG1764 - chrX 13300108 intron CG1764 - chrX 13300292 intron CG1764 - chrX_26_13300001 chrX_13300001 RAL-361 4278 chrX 13301785 13301860 chrX 13301987 13302066 27 202 8.5 5.0 6.8 3.5 281 chrX 13301785 intron CG1764 - chrX 13301926 intron CG1764 - chrX 13302066 intron CG1764 - chrX_27_13300001 chrX_13300001 RAL-361 4279 chrX 13347003 13347039 chrX 13347160 13347196 5 157 0.0 10.5 5.2 0.8 193 chrX 13347003 intergenic not near genes chrX 13347100 intergenic not near genes chrX 13347196 intergenic not near genes chrX_5_13345001 chrX_13345001 RAL-361 4280 chrX 13401442 13401506 chrX 13401844 13401908 jockey 14 402 4.5 7.5 6.0 2.0 466 chrX 13401442 intergenic CG1673 +,CG12725 - chrX 13401675 intergenic CG12725 -,CG1673 + chrX 13401908 3` UTR CG12725 - chrX_14_13400001 chrX_13400001 RAL-361 4281 chrX 13421449 13421463 chrX 13421567 13421597 6 131 0.0 8.5 4.2 1.2 148 chrX 13421449 intergenic Set2 + chrX 13421523 intergenic Set2 + chrX 13421597 intergenic not near genes chrX_6_13420001 chrX_13420001 RAL-361 4282 chrX 13429413 13429484 chrX 13430612 13430683 jockey 12 1199 0.0 6.0 3.0 3.0 1270 chrX 13429413 intergenic not near genes chrX 13430048 intergenic not near genes chrX 13430683 intergenic not near genes chrX_12_13430001 chrX_13430001 RAL-361 4283 chrX 13437009 13437012 chrX 13437137 13437140 4 128 1.0 7.0 4.0 0.8 131 chrX 13437009 intergenic not near genes chrX 13437074 intergenic not near genes chrX 13437140 intergenic not near genes chrX_4_13435001 chrX_13435001 RAL-361 4284 chrX 13442120 13442164 chrX 13442256 13442305 14 140 0.0 9.0 4.5 2.5 185 chrX 13442120 intergenic not near genes chrX 13442212 intergenic not near genes chrX 13442305 intergenic not near genes chrX_14_13440001 chrX_13440001 RAL-361 4285 chrX 13463613 13463667 chrX 13469225 13469294 mdg3 13 5626 6.5 12.5 9.5 1.2 5681 chrX 13463613 intron Neto + chrX 13466454 intron Neto + chrX 13469294 intron Neto + chrX_13_13465001 chrX_13465001 RAL-361 4286 chrX 13471370 13471388 chrX 13471503 13471508 4 130 5.5 19.5 12.5 0.3 138 chrX 13471370 intron Neto + chrX 13471439 intron Neto + chrX 13471508 intron Neto + chrX_4_13470001 chrX_13470001 RAL-361 4287 chrX 13507298 13507331 chrX 13507422 13507457 10 129 0.0 11.0 5.5 1.5 159 chrX 13507298 intron Neto + chrX 13507378 intron Neto + chrX 13507457 intron Neto + chrX_10_13505001 chrX_13505001 RAL-361 4288 chrX 13563380 13563448 chrX 13563510 13563578 16 130 4.0 3.0 3.5 3.6 198 chrX 13563380 intergenic CG32633 +,Tango13 + chrX 13563479 intergenic CG32633 +,Tango13 + chrX 13563578 intergenic CG32633 +,Tango13 + chrX_16_13560001 chrX_13560001 RAL-361 4289 chrX 13577709 13577780 chrX 13577994 13578066 17 285 6.5 7.0 6.8 2.2 357 chrX 13577709 intron Tango13 + chrX 13577888 intron Tango13 + chrX 13578066 intron Tango13 + chrX_17_13575001 chrX_13575001 RAL-361 4290 chrX 13603818 13603859 chrX 13603954 13603995 16 136 2.0 9.5 5.8 2.4 177 chrX 13603818 intergenic not near genes chrX 13603906 intergenic CR44654 + chrX 13603995 intergenic CR44654 + chrX_16_13600001 chrX_13600001 RAL-361 4291 chrX 13734048 13734112 chrX 13734194 13734250 17 143 2.5 9.5 6.0 2.4 202 chrX 13734048 intron g - chrX 13734149 intron g - chrX 13734250 intron g - chrX_17_13730001 chrX_13730001 RAL-361 4292 chrX 13821434 13821471 chrX 13821549 13821581 13 123 3.0 4.5 3.8 2.7 147 chrX 13821434 intron Clic - chrX 13821508 intron Clic - chrX 13821581 intron Clic - chrX_13_13820001 chrX_13820001 RAL-361 4293 chrX 13880240 13880260 chrX 13880362 13880371 4 122 11.5 8.5 10.0 0.4 131 chrX 13880240 intron mamo - chrX 13880306 intron mamo - chrX 13880371 intron mamo - chrX_4_13880001 chrX_13880001 RAL-361 4294 chrX 13908749 13908782 chrX 13908877 13908890 10 126 12.0 12.5 12.2 0.8 141 chrX 13908749 intron mamo - chrX 13908820 intron mamo - chrX 13908890 intron mamo - chrX_10_13905001 chrX_13905001 RAL-361 4295 chrX 13935478 13935500 chrX 13935611 13935633 10 132 15.5 15.0 15.2 0.6 155 chrX 13935478 intron mamo - chrX 13935556 intron mamo - chrX 13935633 intron mamo - chrX_10_13935001 chrX_13935001 RAL-361 4296 chrX 13935502 13935524 chrX 13935605 13935657 11 130 10.5 13.0 11.8 0.9 155 chrX 13935502 intron mamo - chrX 13935580 intron mamo - chrX 13935657 intron mamo - chrX_11_13935001 chrX_13935001 RAL-361 4297 chrX 13937936 13937992 chrX 13941257 13941313 I-element 20 3321 7.5 9.0 8.2 2.2 3377 chrX 13937936 intron mamo - chrX 13939624 intron mamo - chrX 13941313 intron mamo - chrX_20_13935001 chrX_13935001 RAL-361 4298 chrX 13943276 13943294 chrX 13943417 13943435 9 140 0.0 16.5 8.2 1.0 159 chrX 13943276 intron mamo - chrX 13943356 intron mamo - chrX 13943435 intron mamo - chrX_9_13940001 chrX_13940001 RAL-361 4299 chrX 14030700 14030781 chrX 14035336 14035356 copia 13 4630 8.0 7.5 7.8 1.5 4656 chrX 14030700 intergenic not near genes chrX 14033028 intergenic not near genes chrX 14035356 intergenic not near genes chrX_13_14030001 chrX_14030001 RAL-361 4300 chrX 14104984 14105045 chrX 14114185 14114231 roo 14 9197 7.5 7.0 7.2 1.7 9247 chrX 14104984 intergenic not near genes chrX 14109608 intergenic not near genes chrX 14114231 5` UTR CR44657 + chrX_14_14105001 chrX_14105001 RAL-361 4301 chrX 14142849 14142911 chrX 14142976 14143038 21 127 9.5 10.0 9.8 1.9 189 chrX 14142849 intergenic not near genes chrX 14142944 intergenic not near genes chrX 14143038 intergenic not near genes chrX_21_14140001 chrX_14140001 RAL-361 4302 chrX 14157567 14157611 chrX 14163266 14163318 297 6 5700 0.0 7.0 3.5 1.3 5751 chrX 14157567 intergenic not near genes chrX 14160442 intergenic not near genes chrX 14163318 intergenic not near genes chrX_6_14160001 chrX_14160001 RAL-361 4303 chrX 14188025 14188096 chrX 14188158 14188229 28 131 7.5 6.5 7.0 3.5 204 chrX 14188025 intergenic CG12481 + chrX 14188127 intergenic CG12481 + chrX 14188229 intergenic CG12481 + chrX_28_14185001 chrX_14185001 RAL-361 4304 chrX 14190707 14190775 chrX 14191013 14191064 21 304 0.5 4.5 2.5 6.0 357 chrX 14190707 3` UTR CG11585 + chrX 14190886 intergenic CG11585 +,CG13403 - chrX 14191064 intergenic CG13403 -,CG11585 + chrX_21_14190001 chrX_14190001 RAL-361 4305 chrX 14209423 14209432 chrX 14209564 14209572 5 141 18.5 8.5 13.5 0.3 149 chrX 14209423 intron,intron l(1)G0007 +,l(1)G0469 - chrX 14209498 intron,intron l(1)G0007 +,l(1)G0469 - chrX 14209572 intron,intron l(1)G0007 +,l(1)G0469 - chrX_5_14205001 chrX_14205001 RAL-361 4306 chrX 14209434 14209484 chrX 14209559 14209625 20 138 7.0 7.5 7.2 2.4 191 chrX 14209434 intron,intron l(1)G0007 +,l(1)G0469 - chrX 14209530 intron,intron l(1)G0007 +,l(1)G0469 - chrX 14209625 intron,intron l(1)G0007 +,l(1)G0469 - chrX_20_14205001 chrX_14205001 RAL-361 4307 chrX 14381363 14381411 chrX 14381567 14381615 19 202 6.0 5.0 5.5 2.9 252 chrX 14381363 intron,3` UTR dpr8 +,betaNACtes4 + chrX 14381489 intron dpr8 + chrX 14381615 intron dpr8 + chrX_19_14380001 chrX_14380001 RAL-361 4308 chrX 14383922 14383931 chrX 14384056 14384065 6 134 9.0 12.5 10.8 0.5 143 chrX 14383922 intron dpr8 + chrX 14383994 intron dpr8 + chrX 14384065 intron dpr8 + chrX_6_14380001 chrX_14380001 RAL-361 4309 chrX 14383934 14383957 chrX 14384052 14384074 4 121 7.0 11.0 9.0 0.4 140 chrX 14383934 intron dpr8 + chrX 14384004 intron dpr8 + chrX 14384074 intron dpr8 + chrX_4_14380001 chrX_14380001 RAL-361 4310 chrX 14384391 14384446 chrX 14384519 14384574 18 126 9.0 10.5 9.8 1.7 183 chrX 14384391 intron dpr8 + chrX 14384482 intron dpr8 + chrX 14384574 intron dpr8 + chrX_18_14380001 chrX_14380001 RAL-361 4311 chrX 14416268 14416327 chrX 14421085 14421144 F-element 12 4817 6.0 6.0 6.0 1.7 4876 chrX 14416268 intron dpr8 + chrX 14418706 intron dpr8 + chrX 14421144 intron dpr8 + chrX_12_14415001 chrX_14415001 RAL-361 4312 chrX 14484920 14484983 chrX 14485059 14485122 16 139 0.0 8.5 4.2 3.1 202 chrX 14484920 intergenic not near genes chrX 14485021 intergenic not near genes chrX 14485122 intergenic not near genes chrX_16_14485001 chrX_14485001 RAL-361 4313 chrX 14487776 14487832 chrX 14487921 14487976 11 144 5.5 4.0 4.8 1.9 200 chrX 14487776 intergenic not near genes chrX 14487876 intergenic not near genes chrX 14487976 intergenic not near genes chrX_11_14485001 chrX_14485001 RAL-361 4314 chrX 14487836 14487854 chrX 14487917 14487999 9 130 3.5 3.5 3.5 2.0 163 chrX 14487836 intergenic not near genes chrX 14487918 intergenic not near genes chrX 14487999 intergenic not near genes chrX_9_14485001 chrX_14485001 RAL-361 4315 chrX 14530498 14530521 chrX 14530637 14530660 9 139 3.5 0.0 1.8 3.2 162 chrX 14530498 intergenic not near genes chrX 14530579 intergenic not near genes chrX 14530660 intergenic not near genes chrX_9_14530001 chrX_14530001 RAL-361 4316 chrX 14570025 14570108 chrX 14570157 14570239 18 132 6.5 0.5 3.5 4.0 214 chrX 14570025 intergenic not near genes chrX 14570132 intergenic not near genes chrX 14570239 intergenic not near genes chrX_18_14570001 chrX_14570001 RAL-361 4317 chrX 14593755 14593823 chrX 14593887 14593955 24 132 3.5 3.0 3.2 5.7 200 chrX 14593755 intron CG9413 - chrX 14593855 intron CG9413 - chrX 14593955 intron CG9413 - chrX_24_14590001 chrX_14590001 RAL-361 4318 chrX 14636444 14636482 chrX 14641917 14641973 I-element 18 5484 7.5 12.0 9.8 1.7 5529 chrX 14636444 intron NetA - chrX 14639208 intron NetA - chrX 14641973 intron NetA - chrX_18_14635001 chrX_14635001 RAL-361 4319 chrX 14713995 14714065 chrX 14714127 14714197 28 132 6.5 7.0 6.8 3.6 202 chrX 14713995 intron NetB - chrX 14714096 intron NetB - chrX 14714197 intron NetB - chrX_28_14710001 chrX_14710001 RAL-361 4320 chrX 14777993 14778049 chrX 14782840 14782896 Doc 16 4847 11.5 8.5 10.0 1.5 4903 chrX 14777993 intergenic CG5347 + chrX 14780444 intergenic not near genes chrX 14782896 intergenic Ag5r2 - chrX_16_14780001 chrX_14780001 RAL-361 4321 chrX 14813686 14813764 chrX 14813814 14813892 31 128 8.5 4.0 6.2 4.3 206 chrX 14813686 intron rut - chrX 14813789 intron rut - chrX 14813892 intron rut - chrX_31_14810001 chrX_14810001 RAL-361 4322 chrX 14818717 14818775 chrX 14823971 14824029 copia 19 5248 5.0 6.0 5.5 2.9 5312 chrX 14818717 intron rut - chrX 14821373 intron rut - chrX 14824029 intron rut - chrX_19_14820001 chrX_14820001 RAL-361 4323 chrX 14875012 14875066 chrX 14875145 14875199 8 133 0.0 8.0 4.0 1.6 187 chrX 14875012 intron Flo2 + chrX 14875106 intron Flo2 + chrX 14875199 intron Flo2 + chrX_8_14875001 chrX_14875001 RAL-361 4324 chrX 14936818 14936882 chrX 14946125 14946189 roo 28 9307 6.5 7.5 7.0 3.5 9371 chrX 14936818 intron pdgy - chrX 14941504 intron pdgy - chrX 14946189 intron pdgy - chrX_28_14940001 chrX_14940001 RAL-361 4325 chrX 14950021 14950081 chrX 14950148 14950208 6 127 14.0 0.5 7.2 0.7 187 chrX 14950021 intron pdgy - chrX 14950114 intron pdgy - chrX 14950208 intron pdgy - chrX_6_14950001 chrX_14950001 RAL-361 4326 chrX 14952391 14952453 chrX 14952609 14952671 20 218 10.0 5.5 7.8 2.3 280 chrX 14952391 intron,3` UTR pdgy -,CR44831 - chrX 14952531 intron,3` UTR pdgy -,CR44831 - chrX 14952671 intron,3` UTR pdgy -,CR44831 - chrX_20_14950001 chrX_14950001 RAL-361 4327 chrX 14967523 14967550 chrX 14967639 14967683 12 128 4.0 0.5 2.2 3.8 160 chrX 14967523 intron eag + chrX 14967603 intron eag + chrX 14967683 intron eag + chrX_12_14965001 chrX_14965001 RAL-361 4328 chrX 14968029 14968101 chrX 14968158 14968230 28 128 0.5 8.5 4.5 5.1 201 chrX 14968029 intron eag + chrX 14968130 intron eag + chrX 14968230 intron eag + chrX_28_14965001 chrX_14965001 RAL-361 4329 chrX 14977383 14977415 chrX 14977535 14977552 5 148 12.5 5.5 9.0 0.5 169 chrX 14977383 intron eag + chrX 14977468 intron eag + chrX 14977552 intron eag + chrX_5_14975001 chrX_14975001 RAL-361 4330 chrX 14977417 14977456 chrX 14977534 14977608 9 135 5.0 5.0 5.0 1.5 191 chrX 14977417 intron eag + chrX 14977512 intron eag + chrX 14977608 intron eag + chrX_9_14975001 chrX_14975001 RAL-361 4331 chrX 14981688 14981738 chrX 14981816 14981867 13 129 6.5 9.0 7.8 1.5 179 chrX 14981688 intron eag + chrX 14981778 intron eag + chrX 14981867 intron eag + chrX_13_14980001 chrX_14980001 RAL-361 4332 chrX 15025199 15025236 chrX 15025343 15025380 9 144 0.0 8.5 4.2 1.7 181 chrX 15025199 intron,intron hiw -,be + chrX 15025290 intron,intron hiw -,be + chrX 15025380 intron,intron hiw -,be + chrX_9_15025001 chrX_15025001 RAL-361 4333 chrX 15029451 15029507 chrX 15029582 15029638 17 131 6.0 6.5 6.2 2.4 187 chrX 15029451 intron,intron hiw -,be + chrX 15029544 intron,intron hiw -,be + chrX 15029638 intron,intron hiw -,be + chrX_17_15025001 chrX_15025001 RAL-361 4334 chrX 15055306 15055365 chrX 15055439 15055498 29 130 5.5 9.5 7.5 3.4 192 chrX 15055306 exon hiw - chrX 15055402 exon hiw - chrX 15055498 exon hiw - chrX_29_15055001 chrX_15055001 RAL-361 4335 chrX 15059124 15059197 chrX 15059280 15059353 15 156 7.0 3.5 5.2 2.4 229 chrX 15059124 exon hiw - chrX 15059238 intron hiw - chrX 15059353 exon hiw - chrX_15_15055001 chrX_15055001 RAL-361 4336 chrX 15165002 15165012 chrX 15165130 15165140 4 128 3.0 6.0 4.5 0.7 138 chrX 15165002 intergenic not near genes chrX 15165071 intergenic not near genes chrX 15165140 intergenic not near genes chrX_4_15165001 chrX_15165001 RAL-361 4337 chrX 15200591 15200631 chrX 15200717 15200757 17 126 8.5 4.0 6.2 2.4 166 chrX 15200591 intergenic not near genes chrX 15200674 intergenic not near genes chrX 15200757 intergenic not near genes chrX_17_15200001 chrX_15200001 RAL-361 4338 chrX 15217246 15217298 chrX 15217380 15217432 13 130 3.0 8.0 5.5 2.0 186 chrX 15217246 intergenic not near genes chrX 15217339 intergenic not near genes chrX 15217432 intergenic not near genes chrX_13_15215001 chrX_15215001 RAL-361 4339 chrX 15228457 15228524 chrX 15228753 15228820 28 296 6.0 7.0 6.5 3.7 363 chrX 15228457 intergenic CG9101 - chrX 15228638 intergenic CG9101 - chrX 15228820 3` UTR CG9101 - chrX_28_15225001 chrX_15225001 RAL-361 4340 chrX 15243119 15243186 chrX 15243404 15243468 25 284 5.0 7.0 6.0 3.6 349 chrX 15243119 intergenic not near genes chrX 15243294 intergenic not near genes chrX 15243468 intergenic PPYR1 - chrX_25_15240001 chrX_15240001 RAL-361 4341 chrX 15265840 15265866 chrX 15265962 15265994 5 127 7.5 7.5 7.5 0.6 154 chrX 15265840 intergenic not near genes chrX 15265917 intergenic not near genes chrX 15265994 intergenic not near genes chrX_5_15265001 chrX_15265001 RAL-361 4342 chrX 15273676 15273685 chrX 15274883 15274902 1360 4 1212 15.5 2.5 9.0 0.4 1226 chrX 15273676 intergenic not near genes chrX 15274289 intergenic not near genes chrX 15274902 intergenic not near genes chrX_4_15270001 chrX_15270001 RAL-361 4343 chrX 15273688 15273732 chrX 15274872 15274949 1360 14 1205 4.5 2.0 3.2 3.3 1261 chrX 15273688 intergenic not near genes chrX 15274318 intergenic not near genes chrX 15274949 intergenic not near genes chrX_14_15270001 chrX_15270001 RAL-361 4344 chrX 15277588 15277667 chrX 15277723 15277747 30 133 5.0 3.0 4.0 6.0 159 chrX 15277588 intergenic not near genes chrX 15277668 intergenic not near genes chrX 15277747 intergenic not near genes chrX_30_15275001 chrX_15275001 RAL-361 4345 chrX 15326683 15326712 chrX 15326931 15326960 I-element 14 248 1.5 6.0 3.8 2.9 277 chrX 15326683 3` UTR Top1 + chrX 15326822 3` UTR Top1 + chrX 15326960 3` UTR Top1 + chrX_14_15325001 chrX_15325001 RAL-361 4346 chrX 15358260 15358335 chrX 15358398 15358473 23 138 6.5 5.0 5.8 3.4 213 chrX 15358260 intron acj6 - chrX 15358366 intron acj6 - chrX 15358473 intron acj6 - chrX_23_15355001 chrX_15355001 RAL-361 4347 chrX 15369786 15369851 chrX 15369919 15369984 14 133 9.5 7.5 8.5 1.5 198 chrX 15369786 intron acj6 - chrX 15369885 intron acj6 - chrX 15369984 intron acj6 - chrX_14_15365001 chrX_15365001 RAL-361 4348 chrX 15413011 15413069 chrX 15417363 15417411 Juan 27 4351 10.0 13.0 11.5 2.2 4400 chrX 15413011 intron Cngl - chrX 15415211 intron Cngl - chrX 15417411 intron Cngl - chrX_27_15415001 chrX_15415001 RAL-361 4349 chrX 15421875 15421944 chrX 15423436 15423505 pogo 19 1559 6.0 7.5 6.8 2.4 1630 chrX 15421875 intron Cngl - chrX 15422690 intron Cngl - chrX 15423505 intron Cngl - chrX_19_15420001 chrX_15420001 RAL-361 4350 chrX 15435689 15435698 chrX 15436172 15436181 rover 4 483 0.5 15.5 8.0 0.4 492 chrX 15435689 intron Cngl - chrX 15435935 intron Cngl - chrX 15436181 intron Cngl - chrX_4_15435001 chrX_15435001 RAL-361 4351 chrX 15591187 15591203 chrX 15591313 15591329 15 126 2.5 18.0 10.2 1.3 142 chrX 15591187 intron CG9220 - chrX 15591258 intron CG9220 - chrX 15591329 intron CG9220 - chrX_15_15590001 chrX_15590001 RAL-361 4352 chrX 15666164 15666226 chrX 15666291 15666353 21 124 6.0 6.5 6.2 2.9 189 chrX 15666164 intergenic CR43299 - chrX 15666258 intergenic not near genes chrX 15666353 intergenic not near genes chrX_21_15665001 chrX_15665001 RAL-361 4353 chrX 15680486 15680494 chrX 15680633 15680641 6 147 0.0 0.0 0.0 6.0 155 chrX 15680486 intergenic not near genes chrX 15680564 intergenic not near genes chrX 15680641 intergenic not near genes chrX_6_15680001 chrX_15680001 RAL-361 4354 chrX 15681352 15681428 chrX 15681484 15681550 26 131 5.5 5.0 5.2 4.2 198 chrX 15681352 intergenic not near genes chrX 15681451 intergenic not near genes chrX 15681550 intergenic not near genes chrX_26_15680001 chrX_15680001 RAL-361 4355 chrX 15726364 15726426 chrX 15726497 15726558 17 131 6.5 7.5 7.0 2.1 194 chrX 15726364 exon CG8184 + chrX 15726461 intron CG8184 + chrX 15726558 exon CG8184 + chrX_17_15725001 chrX_15725001 RAL-361 4356 chrX 15749600 15749681 chrX 15749757 15749834 17 155 3.5 4.5 4.0 3.4 234 chrX 15749600 intron CG8239 + chrX 15749717 intron CG8239 + chrX 15749834 exon CG8239 + chrX_17_15745001 chrX_15745001 RAL-361 4357 chrX 15817552 15817602 chrX 15817770 15817820 25 218 8.0 12.0 10.0 2.3 268 chrX 15817552 intron sd + chrX 15817686 intron sd + chrX 15817820 intron sd + chrX_25_15815001 chrX_15815001 RAL-361 4358 chrX 15860873 15860952 chrX 15861019 15861085 27 145 5.0 7.0 6.0 3.9 212 chrX 15860873 intron Gbeta13F + chrX 15860979 intron Gbeta13F + chrX 15861085 intron Gbeta13F + chrX_27_15860001 chrX_15860001 RAL-361 4359 chrX 15939219 15939298 chrX 15939354 15939433 15 135 4.0 4.0 4.0 3.0 214 chrX 15939219 5` UTR Stim - chrX 15939326 intron Stim - chrX 15939433 intron Stim - chrX_15_15935001 chrX_15935001 RAL-361 4360 chrX 15970877 15970910 chrX 15971005 15971036 9 128 1.0 7.5 4.2 1.7 159 chrX 15970877 intron mmd - chrX 15970956 intron mmd - chrX 15971036 intron mmd - chrX_9_15970001 chrX_15970001 RAL-361 4361 chrX 16074115 16074157 chrX 16074501 16074543 8 386 0.0 4.5 2.2 2.5 428 chrX 16074115 intergenic not near genes chrX 16074329 intergenic Tob - chrX 16074543 intergenic Tob - chrX_8_16070001 chrX_16070001 RAL-361 4362 chrX 16100513 16100589 chrX 16100642 16100709 13 129 7.5 5.5 6.5 1.7 196 chrX 16100513 intron,intron CG42353 -,CG42354 - chrX 16100611 intron,intron CG42353 -,CG42354 - chrX 16100709 intron,intron CG42353 -,CG42354 - chrX_13_16100001 chrX_16100001 RAL-361 4363 chrX 16154891 16154917 chrX 16155024 16155030 6 127 14.5 0.0 7.2 0.7 139 chrX 16154891 intergenic not near genes chrX 16154960 intergenic not near genes chrX 16155030 intergenic not near genes chrX_6_16150001 chrX_16150001 RAL-361 4364 chrX 16156602 16156655 chrX 16156716 16156766 17 129 8.0 9.5 8.8 1.7 164 chrX 16156602 intergenic not near genes chrX 16156684 intergenic not near genes chrX 16156766 intergenic not near genes chrX_17_16155001 chrX_16155001 RAL-361 4365 chrX 16222743 16222805 chrX 16231143 16231205 roo 24 8400 0.0 9.5 4.8 4.1 8462 chrX 16222743 intergenic not near genes chrX 16226974 intergenic not near genes chrX 16231205 intergenic not near genes chrX_24_16225001 chrX_16225001 RAL-361 4366 chrX 16295484 16295556 chrX 16295618 16295684 16 131 7.0 0.0 3.5 3.6 200 chrX 16295484 intron CG9911 - chrX 16295584 intron CG9911 - chrX 16295684 intron CG9911 - chrX_16_16295001 chrX_16295001 RAL-361 4367 chrX 16329374 16329445 chrX 16329503 16329572 16 130 2.5 4.5 3.5 3.6 198 chrX 16329374 intron CG9919 - chrX 16329473 intron CG9919 - chrX 16329572 exon CG9919 - chrX_16_16325001 chrX_16325001 RAL-361 4368 chrX 16331378 16331438 chrX 16331506 16331566 27 128 8.0 7.0 7.5 3.2 188 chrX 16331378 3` UTR CG9921 - chrX 16331472 3` UTR CG9921 - chrX 16331566 exon CG9921 - chrX_27_16330001 chrX_16330001 RAL-361 4369 chrX 16340618 16340649 chrX 16349823 16349854 roo 13 9205 6.5 7.0 6.8 1.7 9236 chrX 16340618 3` UTR Dsp1 + chrX 16345236 intergenic not near genes chrX 16349854 intergenic sl + chrX_13_16345001 chrX_16345001 RAL-361 4370 chrX 16356473 16356548 chrX 16356641 16356716 35 168 7.0 5.0 6.0 5.0 243 chrX 16356473 3` UTR sl + chrX 16356594 intergenic U2af50 -,sl + chrX 16356716 3` UTR U2af50 - chrX_35_16355001 chrX_16355001 RAL-361 4371 chrX 16437565 16437633 chrX 16437702 16437771 27 137 8.0 6.0 7.0 3.4 206 chrX 16437565 3` UTR,3` UTR hang +,CG9947 - chrX 16437668 3` UTR,3` UTR hang +,CG9947 - chrX 16437771 3` UTR,3` UTR hang +,CG9947 - chrX_27_16435001 chrX_16435001 RAL-361 4372 chrX 16492600 16492669 chrX 16498227 16498287 mdg3 19 5626 7.0 7.0 7.0 2.4 5687 chrX 16492600 intron para - chrX 16495444 intron para - chrX 16498287 exon para - chrX_19_16495001 chrX_16495001 RAL-361 4373 chrX 16505827 16505861 chrX 16505953 16505993 8 131 14.0 10.5 12.2 0.6 166 chrX 16505827 intron para - chrX 16505910 intron para - chrX 16505993 exon para - chrX_8_16505001 chrX_16505001 RAL-361 4374 chrX 16511301 16511308 chrX 16511436 16511443 4 135 0.0 13.5 6.8 0.5 142 chrX 16511301 intron para - chrX 16511372 intron para - chrX 16511443 intron para - chrX_4_16510001 chrX_16510001 RAL-361 4375 chrX 16552593 16552627 chrX 16552818 16552852 11 225 2.5 11.5 7.0 1.4 259 chrX 16552593 intron Arp2 - chrX 16552722 intron Arp2 - chrX 16552852 intron Arp2 - chrX_11_16550001 chrX_16550001 RAL-361 4376 chrX 16569664 16569687 chrX 16569795 16569816 7 128 9.5 13.0 11.2 0.6 152 chrX 16569664 intron CanA-14F - chrX 16569740 intron CanA-14F - chrX 16569816 intron CanA-14F - chrX_7_16565001 chrX_16565001 RAL-361 4377 chrX 16622241 16622294 chrX 16622369 16622414 17 126 3.5 7.5 5.5 2.6 173 chrX 16622241 intergenic not near genes chrX 16622328 intergenic not near genes chrX 16622414 intergenic not near genes chrX_17_16620001 chrX_16620001 RAL-361 4378 chrX 16623449 16623452 chrX 16623585 16623588 4 136 16.5 1.0 8.8 0.4 139 chrX 16623449 intergenic not near genes chrX 16623518 intergenic Rok - chrX 16623588 intergenic Rok - chrX_4_16620001 chrX_16620001 RAL-361 4379 chrX 16672241 16672302 chrX 16672467 16672514 20 225 7.5 6.5 7.0 2.5 273 chrX 16672241 intron CG13012 - chrX 16672378 intron CG13012 - chrX 16672514 intron CG13012 - chrX_20_16670001 chrX_16670001 RAL-361 4380 chrX 16677276 16677333 chrX 16677461 16677518 17 185 0.0 4.0 2.0 5.7 242 chrX 16677276 intergenic not near genes chrX 16677397 intergenic not near genes chrX 16677518 intergenic not near genes chrX_17_16675001 chrX_16675001 RAL-361 4381 chrX 16700476 16700553 chrX 16700609 16700685 11 128 0.0 12.5 6.2 1.5 209 chrX 16700476 intron,3` UTR CG4678 +,spheroide - chrX 16700580 intron,3` UTR CG4678 +,spheroide - chrX 16700685 intron,3` UTR CG4678 +,spheroide - chrX_11_16700001 chrX_16700001 RAL-361 4382 chrX 16707958 16707973 chrX 16708142 16708157 6 183 0.0 6.5 3.2 1.4 199 chrX 16707958 intron CG4678 + chrX 16708058 intron CG4678 + chrX 16708157 intron CG4678 + chrX_6_16705001 chrX_16705001 RAL-361 4383 chrX 16764688 16764704 chrX 16764815 16764831 7 127 20.5 0.0 10.2 0.6 143 chrX 16764688 intron if - chrX 16764760 intron if - chrX 16764831 intron if - chrX_7_16760001 chrX_16760001 RAL-361 4384 chrX 16867754 16867771 chrX 16867882 16867899 13 127 6.5 5.5 6.0 1.9 145 chrX 16867754 intron CG13003 - chrX 16867826 intron CG13003 - chrX 16867899 intron CG13003 - chrX_13_16865001 chrX_16865001 RAL-361 4385 chrX 16873990 16873999 chrX 16874116 16874125 6 126 9.5 6.0 7.8 0.7 135 chrX 16873990 intron CG13003 - chrX 16874058 intron CG13003 - chrX 16874125 intron CG13003 - chrX_6_16870001 chrX_16870001 RAL-361 4386 chrX 16935955 16936021 chrX 16936423 16936489 jockey 14 468 7.0 2.5 4.8 2.4 534 chrX 16935955 intron CG4928 + chrX 16936222 intron CG4928 + chrX 16936489 intron CG4928 + chrX_14_16935001 chrX_16935001 RAL-361 4387 chrX 16951303 16951348 chrX 16951405 16951477 18 120 7.5 7.0 7.2 2.2 174 chrX 16951303 exon RhoGAP15B + chrX 16951390 exon RhoGAP15B + chrX 16951477 exon RhoGAP15B + chrX_18_16950001 chrX_16950001 RAL-361 4388 chrX 17007003 17007023 chrX 17007121 17007157 8 126 10.5 9.0 9.8 0.7 154 chrX 17007003 intron CG45002 - chrX 17007080 intron CG45002 - chrX 17007157 intron CG45002 - chrX_8_17005001 chrX_17005001 RAL-361 4389 chrX 17011919 17011997 chrX 17012052 17012100 22 128 4.5 9.0 6.8 2.8 181 chrX 17011919 intron CG45002 - chrX 17012010 intron CG45002 - chrX 17012100 intron CG45002 - chrX_22_17010001 chrX_17010001 RAL-361 4390 chrX 17054127 17054199 chrX 17054384 17054456 24 257 5.0 7.5 6.2 3.3 329 chrX 17054127 intron CG45002 - chrX 17054292 intron CG45002 - chrX 17054456 intron CG45002 - chrX_24_17050001 chrX_17050001 RAL-361 4391 chrX 17057943 17057949 chrX 17058233 17058240 pogo 4 291 3.5 12.5 8.0 0.4 297 chrX 17057943 intron CG45002 - chrX 17058092 intron CG45002 - chrX 17058240 intron CG45002 - chrX_4_17055001 chrX_17055001 RAL-361 4392 chrX 17060407 17060478 chrX 17060536 17060607 12 127 4.5 1.5 3.0 3.0 200 chrX 17060407 intron CG45002 - chrX 17060507 intron CG45002 - chrX 17060607 intron CG45002 - chrX_12_17060001 chrX_17060001 RAL-361 4393 chrX 17061010 17061052 chrX 17061145 17061198 14 136 0.5 7.0 3.8 2.9 188 chrX 17061010 intron CG45002 - chrX 17061104 intron CG45002 - chrX 17061198 intron CG45002 - chrX_14_17060001 chrX_17060001 RAL-361 4394 chrX 17088135 17088200 chrX 17088778 17088843 9 643 2.5 6.5 4.5 1.6 708 chrX 17088135 intergenic CG8945 - chrX 17088489 intergenic not near genes chrX 17088843 intergenic not near genes chrX_9_17085001 chrX_17085001 RAL-361 4395 chrX 17119713 17119736 chrX 17119857 17119880 15 144 0.0 7.5 3.8 3.1 167 chrX 17119713 intron CG5004 + chrX 17119796 intron CG5004 + chrX 17119880 intron CG5004 + chrX_15_17115001 chrX_17115001 RAL-361 4396 chrX 17122596 17122666 chrX 17122737 17122771 15 132 5.5 6.0 5.8 2.2 175 chrX 17122596 intron CG5004 + chrX 17122684 intron CG5004 + chrX 17122771 intron CG5004 + chrX_15_17120001 chrX_17120001 RAL-361 4397 chrX 17127240 17127271 chrX 17127373 17127384 9 129 12.0 7.5 9.8 0.8 144 chrX 17127240 exon CG5004 + chrX 17127312 exon CG5004 + chrX 17127384 exon CG5004 + chrX_9_17125001 chrX_17125001 RAL-361 4398 chrX 17127276 17127311 chrX 17127372 17127444 15 124 4.5 7.0 5.8 2.2 168 chrX 17127276 exon CG5004 + chrX 17127360 exon CG5004 + chrX 17127444 exon CG5004 + chrX_15_17125001 chrX_17125001 RAL-361 4399 chrX 17149622 17149631 chrX 17154238 17154247 5 4616 73.0 29.0 51.0 0.1 4625 chrX 17149622 intron CG5010 + chrX 17151934 exon xmas-1 - chrX 17154247 intron,3` UTR xmas-1 -,xmas-2 - chrX_5_17150001 chrX_17150001 RAL-361 4400 chrX 17172179 17172260 chrX 17172305 17172386 11 126 4.0 3.0 3.5 2.4 207 chrX 17172179 intron baz + chrX 17172282 intron baz + chrX 17172386 intron baz + chrX_11_17170001 chrX_17170001 RAL-361 4401 chrX 17179536 17179610 chrX 17179684 17179758 28 146 8.0 8.5 8.2 3.0 222 chrX 17179536 intron baz + chrX 17179647 intron baz + chrX 17179758 intron baz + chrX_28_17175001 chrX_17175001 RAL-361 4402 chrX 17195185 17195231 chrX 17200300 17200365 flea 15 5132 8.5 12.5 10.5 1.3 5180 chrX 17195185 3` UTR baz + chrX 17197775 3` UTR baz + chrX 17200365 3` UTR baz + chrX_15_17195001 chrX_17195001 RAL-361 4403 chrX 17205803 17205857 chrX 17205943 17205997 21 140 8.5 12.0 10.2 1.9 194 chrX 17205803 intergenic not near genes chrX 17205900 intergenic not near genes chrX 17205997 intergenic CG32564 + chrX_21_17205001 chrX_17205001 RAL-361 4404 chrX 17221717 17221724 chrX 17221845 17221852 5 128 6.5 7.5 7.0 0.6 135 chrX 17221717 exon CG5172 + chrX 17221784 intron CG5172 + chrX 17221852 intron CG5172 + chrX_5_17220001 chrX_17220001 RAL-361 4405 chrX 17221740 17221785 chrX 17221844 17221913 14 126 4.0 7.0 5.5 2.2 173 chrX 17221740 exon CG5172 + chrX 17221826 intron CG5172 + chrX 17221913 intron CG5172 + chrX_14_17220001 chrX_17220001 RAL-361 4406 chrX 17234220 17234295 chrX 17234361 17234442 11 139 7.5 0.5 4.0 2.2 222 chrX 17234220 intron f + chrX 17234331 intron f + chrX 17234442 intron f + chrX_11_17230001 chrX_17230001 RAL-361 4407 chrX 17237485 17237536 chrX 17237621 17237672 9 136 7.0 9.0 8.0 1.0 187 chrX 17237485 intron f + chrX 17237578 intron f + chrX 17237672 intron f + chrX_9_17235001 chrX_17235001 RAL-361 4408 chrX 17262143 17262177 chrX 17262279 17262313 12 136 15.0 11.5 13.2 0.8 170 chrX 17262143 intron f + chrX 17262228 intron f + chrX 17262313 intron f + chrX_12_17260001 chrX_17260001 RAL-361 4409 chrX 17282837 17282848 chrX 17282965 17282976 5 128 15.0 0.0 7.5 0.6 139 chrX 17282837 5` UTR CG5445 + chrX 17282906 5` UTR CG5445 + chrX 17282976 intron CG5445 + chrX_5_17280001 chrX_17280001 RAL-361 4410 chrX 17282851 17282856 chrX 17282955 17282984 4 122 13.5 1.5 7.5 0.5 133 chrX 17282851 intron CG5445 + chrX 17282918 5` UTR CG5445 + chrX 17282984 intron CG5445 + chrX_4_17280001 chrX_17280001 RAL-361 4411 chrX 17290028 17290086 chrX 17290154 17290212 18 126 10.0 8.5 9.2 1.8 184 chrX 17290028 intron,intron CG5445 +,Fim - chrX 17290120 intron,intron CG5445 +,Fim - chrX 17290212 intron,intron CG5445 +,Fim - chrX_18_17290001 chrX_17290001 RAL-361 4412 chrX 17352549 17352616 chrX 17352693 17352769 16 148 0.0 7.5 3.8 3.3 220 chrX 17352549 intergenic not near genes chrX 17352659 intergenic not near genes chrX 17352769 intergenic not near genes chrX_16_17350001 chrX_17350001 RAL-361 4413 chrX 17357488 17357513 chrX 17357632 17357657 10 144 11.0 5.5 8.2 1.1 169 chrX 17357488 intergenic not near genes chrX 17357572 intergenic not near genes chrX 17357657 intergenic not near genes chrX_10_17355001 chrX_17355001 RAL-361 4414 chrX 17426999 17427071 chrX 17427136 17427208 29 136 5.0 6.5 5.8 4.3 209 chrX 17426999 intron,intron CG12994 -,CG5613 + chrX 17427104 intron,intron CG12994 -,CG5613 + chrX 17427208 intron,intron CG12994 -,CG5613 + chrX_29_17425001 chrX_17425001 RAL-361 4415 chrX 17431313 17431339 chrX 17431704 17431730 jockey 8 390 16.0 7.5 11.8 0.6 417 chrX 17431313 intron CG12994 - chrX 17431522 intron CG12994 - chrX 17431730 intron CG12994 - chrX_8_17430001 chrX_17430001 RAL-361 4416 chrX 17443088 17443102 chrX 17443262 17443276 6 174 8.5 3.5 6.0 0.9 188 chrX 17443088 intron CG12994 - chrX 17443182 intron CG12994 - chrX 17443276 intron CG12994 - chrX_6_17440001 chrX_17440001 RAL-361 4417 chrX 17479898 17479932 chrX 17480018 17480059 10 124 15.5 8.0 11.8 0.8 161 chrX 17479898 intron CG43658 - chrX 17479978 intron CG43658 - chrX 17480059 intron CG43658 - chrX_10_17475001 chrX_17475001 RAL-361 4418 chrX 17502305 17502372 chrX 17502435 17502502 30 129 7.5 10.5 9.0 3.0 197 chrX 17502305 intron CG43658 - chrX 17502404 intron CG43658 - chrX 17502502 intron CG43658 - chrX_30_17500001 chrX_17500001 RAL-361 4419 chrX 17544965 17545024 chrX 17545097 17545149 20 129 5.5 7.0 6.2 2.8 184 chrX 17544965 intron CG43658 - chrX 17545057 intron CG43658 - chrX 17545149 intron CG43658 - chrX_20_17545001 chrX_17545001 RAL-361 4420 chrX 17685408 17685471 chrX 17685541 17685604 24 133 0.0 4.5 2.2 7.5 196 chrX 17685408 intron chas - chrX 17685506 intron chas - chrX 17685604 intron chas - chrX_24_17685001 chrX_17685001 RAL-361 4421 chrX 17695804 17695852 chrX 17695931 17695979 21 127 8.5 14.0 11.2 1.7 175 chrX 17695804 intron chas - chrX 17695892 intron chas - chrX 17695979 intron chas - chrX_21_17695001 chrX_17695001 RAL-361 4422 chrX 17708781 17708846 chrX 17708908 17708975 22 127 8.5 6.0 7.2 2.7 194 chrX 17708781 intron CG8173 - chrX 17708878 intron CG8173 - chrX 17708975 intron CG8173 - chrX_22_17705001 chrX_17705001 RAL-361 4423 chrX 17716546 17716604 chrX 17716683 17716740 19 135 4.0 7.0 5.5 2.9 194 chrX 17716546 intron CG42684 + chrX 17716643 intron CG42684 + chrX 17716740 intron CG42684 + chrX_19_17715001 chrX_17715001 RAL-361 4424 chrX 17726404 17726463 chrX 17726534 17726592 14 124 4.5 12.0 8.2 1.5 188 chrX 17726404 intron CG42684 + chrX 17726498 intron CG42684 + chrX 17726592 intron CG42684 + chrX_14_17725001 chrX_17725001 RAL-361 4425 chrX 17741292 17741320 chrX 17741488 17741516 9 196 6.0 7.5 6.8 1.2 224 chrX 17741292 intron CG42684 + chrX 17741404 intron CG42684 + chrX 17741516 intron CG42684 + chrX_9_17740001 chrX_17740001 RAL-361 4426 chrX 17766323 17766377 chrX 17766459 17766525 19 147 8.5 9.5 9.0 1.9 202 chrX 17766323 intergenic not near genes chrX 17766424 intergenic not near genes chrX 17766525 intergenic not near genes chrX_19_17765001 chrX_17765001 RAL-361 4427 chrX 17782177 17782239 chrX 17782325 17782377 19 146 5.0 5.0 5.0 3.2 200 chrX 17782177 intergenic not near genes chrX 17782277 intergenic not near genes chrX 17782377 intergenic not near genes chrX_19_17780001 chrX_17780001 RAL-361 4428 chrX 17782526 17782543 chrX 17782665 17782682 4 137 14.5 8.5 11.5 0.3 156 chrX 17782526 intergenic not near genes chrX 17782604 intergenic not near genes chrX 17782682 intergenic not near genes chrX_4_17780001 chrX_17780001 RAL-361 4429 chrX 17782544 17782592 chrX 17782661 17782731 15 131 7.5 7.0 7.2 1.8 187 chrX 17782544 intergenic not near genes chrX 17782638 intergenic not near genes chrX 17782731 intergenic not near genes chrX_15_17780001 chrX_17780001 RAL-361 4430 chrX 17784435 17784487 chrX 17784561 17784613 17 126 0.5 7.0 3.8 3.5 178 chrX 17784435 intergenic not near genes chrX 17784524 intergenic not near genes chrX 17784613 intergenic not near genes chrX_17_17780001 chrX_17780001 RAL-361 4431 chrX 17792935 17792973 chrX 17796253 17796321 flea 11 3342 4.5 6.5 5.5 1.7 3386 chrX 17792935 intron OdsH + chrX 17794628 intron OdsH + chrX 17796321 intron OdsH + chrX_11_17790001 chrX_17790001 RAL-361 4432 chrX 17881429 17881475 chrX 17881678 17881724 19 249 9.5 0.0 4.8 3.3 295 chrX 17881429 intron mnb - chrX 17881576 intron mnb - chrX 17881724 intron mnb - chrX_19_17880001 chrX_17880001 RAL-361 4433 chrX 17968850 17968915 chrX 17969019 17969083 18 168 6.5 6.0 6.2 2.5 233 chrX 17968850 intron Sh - chrX 17968966 intron Sh - chrX 17969083 intron Sh - chrX_18_17965001 chrX_17965001 RAL-361 4434 chrX 18003410 18003461 chrX 18003542 18003593 17 132 5.5 1.0 3.2 4.0 183 chrX 18003410 intron Sh - chrX 18003502 intron Sh - chrX 18003593 intron Sh - chrX_17_18000001 chrX_18000001 RAL-361 4435 chrX 18029141 18029180 chrX 18029272 18029308 15 130 4.0 0.0 2.0 5.0 167 chrX 18029141 intron Sh - chrX 18029224 intron Sh - chrX 18029308 intron Sh - chrX_15_18025001 chrX_18025001 RAL-361 4436 chrX 18040379 18040453 chrX 18040517 18040591 20 138 4.0 4.0 4.0 4.0 212 chrX 18040379 5` UTR Sh - chrX 18040485 intron Sh - chrX 18040591 intron Sh - chrX_20_18040001 chrX_18040001 RAL-361 4437 chrX 18148589 18148624 chrX 18148742 18148777 12 153 6.0 4.5 5.2 1.9 188 chrX 18148589 intergenic not near genes chrX 18148683 intergenic not near genes chrX 18148777 intergenic not near genes chrX_12_18145001 chrX_18145001 RAL-361 4438 chrX 18176992 18177020 chrX 18177135 18177163 13 143 4.0 3.0 3.5 2.9 171 chrX 18176992 intergenic not near genes chrX 18177078 intergenic not near genes chrX 18177163 intergenic Frq2 + chrX_13_18175001 chrX_18175001 RAL-361 4439 chrX 18194025 18194091 chrX 18194610 18194676 BS 26 584 6.5 10.0 8.2 2.8 651 chrX 18194025 intron Frq2 + chrX 18194350 intron Frq2 + chrX 18194676 intron Frq2 + chrX_26_18190001 chrX_18190001 RAL-361 4440 chrX 18256419 18256480 chrX 18256584 18256655 16 166 0.5 6.0 3.2 3.8 236 chrX 18256419 intergenic CR45613 - chrX 18256537 intergenic CR45613 - chrX 18256655 3` UTR CR45613 - chrX_16_18255001 chrX_18255001 RAL-361 4441 chrX 18297507 18297554 chrX 18297636 18297683 11 129 10.5 4.0 7.2 1.3 176 chrX 18297507 intergenic not near genes chrX 18297595 intergenic not near genes chrX 18297683 intergenic not near genes chrX_11_18295001 chrX_18295001 RAL-361 4442 chrX 18429454 18429517 chrX 18434815 18434878 Transpac 28 5361 5.5 4.5 5.0 4.7 5424 chrX 18429454 intergenic not near genes chrX 18432166 intergenic not near genes chrX 18434878 intergenic not near genes chrX_28_18430001 chrX_18430001 RAL-361 4443 chrX 18489993 18490049 chrX 18490198 18490254 17 204 12.5 4.0 8.2 1.8 261 chrX 18489993 intergenic CG15046 - chrX 18490124 intergenic not near genes chrX 18490254 intergenic not near genes chrX_17_18490001 chrX_18490001 RAL-361 4444 chrX 18529346 18529398 chrX 18529472 18529524 19 126 4.5 7.0 5.8 2.8 178 chrX 18529346 intron,3` UTR Bx +,CG15047 + chrX 18529435 intron,3` UTR Bx +,CG15047 + chrX 18529524 intron,3` UTR Bx +,CG15047 + chrX_19_18525001 chrX_18525001 RAL-361 4445 chrX 18546055 18546077 chrX 18546248 18546261 5 191 15.5 6.5 11.0 0.4 206 chrX 18546055 intron Bx + chrX 18546158 intron Bx + chrX 18546261 intron Bx + chrX_5_18545001 chrX_18545001 RAL-361 4446 chrX 18546082 18546122 chrX 18546246 18546293 17 183 5.0 6.0 5.5 2.6 211 chrX 18546082 intron Bx + chrX 18546188 intron Bx + chrX 18546293 intron Bx + chrX_17_18545001 chrX_18545001 RAL-361 4447 chrX 18558727 18558805 chrX 18558859 18558937 39 131 7.0 8.5 7.8 4.4 210 chrX 18558727 intron Bx + chrX 18558832 intron Bx + chrX 18558937 intron Bx + chrX_39_18555001 chrX_18555001 RAL-361 4448 chrX 12946234 12946235 chrX 18572524 18572525 4 5626290 29.0 37.5 33.2 0.1 5626291 chrX 12946234 3` UTR fne + chrX 15759380 intron Graf - chrX 18572525 intergenic not near genes chrX_4_15755001 chrX_15755001 RAL-361 4449 chrX 18576079 18576101 chrX 18576207 18576229 11 128 2.5 9.5 6.0 1.6 150 chrX 18576079 intergenic not near genes chrX 18576154 intergenic not near genes chrX 18576229 intergenic not near genes chrX_11_18575001 chrX_18575001 RAL-361 4450 chrX 18644975 18645040 chrX 18645121 18645188 27 147 8.5 7.5 8.0 3.0 213 chrX 18644975 intron Rip11 - chrX 18645082 intron Rip11 - chrX 18645188 intron Rip11 - chrX_27_18645001 chrX_18645001 RAL-361 4451 chrX 18698797 18698876 chrX 18698964 18699043 17 166 5.5 5.5 5.5 2.6 246 chrX 18698797 intergenic not near genes chrX 18698920 intergenic not near genes chrX 18699043 intergenic not near genes chrX_17_18695001 chrX_18695001 RAL-361 4452 chrX 18754290 18754333 chrX 18758007 18758050 297 20 3717 10.0 9.0 9.5 1.9 3760 chrX 18754290 intergenic not near genes chrX 18756170 intergenic not near genes chrX 18758050 intergenic not near genes chrX_20_18755001 chrX_18755001 RAL-361 4453 chrX 18896471 18896487 chrX 18896632 18896648 10 161 17.0 9.0 13.0 0.7 177 chrX 18896471 3` UTR CG7349 + chrX 18896560 3` UTR CG7349 + chrX 18896648 intergenic CG7349 + chrX_10_18895001 chrX_18895001 RAL-361 4454 chrX 18896488 18896537 chrX 18896629 18896698 9 156 7.0 9.0 8.0 1.0 210 chrX 18896488 3` UTR CG7349 + chrX 18896593 intergenic CG7349 + chrX 18896698 intergenic CG7349 + chrX_9_18895001 chrX_18895001 RAL-361 4455 chrX 18926492 18926505 chrX 18926634 18926647 4 142 11.0 0.0 5.5 0.6 155 chrX 18926492 intergenic not near genes chrX 18926570 intergenic not near genes chrX 18926647 intergenic not near genes chrX_4_18925001 chrX_18925001 RAL-361 4456 chrX 18927574 18927611 chrX 18927710 18927747 9 136 10.5 2.0 6.2 1.2 173 chrX 18927574 intergenic not near genes chrX 18927660 intergenic not near genes chrX 18927747 intergenic not near genes chrX_9_18925001 chrX_18925001 RAL-361 4457 chrX 18947454 18947527 chrX 18947597 18947670 30 142 5.0 8.0 6.5 4.0 216 chrX 18947454 intron CG43759 + chrX 18947562 intron CG43759 + chrX 18947670 intron CG43759 + chrX_30_18945001 chrX_18945001 RAL-361 4458 chrX 18957033 18957092 chrX 18965746 18965805 roo 24 8711 9.0 9.0 9.0 2.4 8772 chrX 18957033 intron CG43759 + chrX 18961419 intron CG43759 + chrX 18965805 intron CG43759 + chrX_24_18960001 chrX_18960001 RAL-361 4459 chrX 18989558 18989616 chrX 18990319 18990327 14 744 6.0 6.5 6.2 1.9 769 chrX 18989558 intron CG43759 + chrX 18989942 intron CG43759 + chrX 18990327 intron CG43759 + chrX_14_18985001 chrX_18985001 RAL-361 4460 chrX 19014320 19014382 chrX 19014448 19014485 22 126 5.0 7.0 6.0 3.1 165 chrX 19014320 intron CG43759 + chrX 19014402 intron CG43759 + chrX 19014485 intron CG43759 + chrX_22_19010001 chrX_19010001 RAL-361 4461 chrX 19060374 19060431 chrX 19065208 19065265 Doc 18 4834 6.5 11.0 8.8 1.8 4891 chrX 19060374 intron CG14190 + chrX 19062820 intron CG14190 + chrX 19065265 intron CG14190 + chrX_18_19060001 chrX_19060001 RAL-361 4462 chrX 19073639 19073647 chrX 19073776 19073784 6 137 15.0 7.0 11.0 0.5 145 chrX 19073639 intergenic not near genes chrX 19073712 intergenic not near genes chrX 19073784 intergenic not near genes chrX_6_19070001 chrX_19070001 RAL-361 4463 chrX 19073648 19073698 chrX 19073770 19073835 13 136 5.5 6.0 5.8 1.9 187 chrX 19073648 intergenic not near genes chrX 19073742 intergenic not near genes chrX 19073835 intergenic not near genes chrX_13_19070001 chrX_19070001 RAL-361 4464 chrX 19084042 19084122 chrX 19084212 19084271 9 168 5.0 0.0 2.5 2.6 229 chrX 19084042 intergenic CR45503 + chrX 19084156 intergenic CR45503 + chrX 19084271 intergenic CR45503 + chrX_9_19080001 chrX_19080001 RAL-361 4465 chrX 19099610 19099674 chrX 19099743 19099807 22 133 8.0 5.5 6.8 2.8 197 chrX 19099610 intergenic not near genes chrX 19099708 intergenic not near genes chrX 19099807 intergenic not near genes chrX_22_19095001 chrX_19095001 RAL-361 4466 chrX 19119652 19119860 chrX 19119788 19119989 20 133 0.0 0.0 0.0 20.0 337 chrX 19119652 intergenic not near genes chrX 19119820 intergenic not near genes chrX 19119989 intergenic not near genes chrX_20_19115001 chrX_19115001 RAL-361 4467 chrX 19124387 19124462 chrX 19124525 19124601 14 139 4.5 2.5 3.5 3.1 214 chrX 19124387 5` UTR CG15882 - chrX 19124494 intergenic CG15882 - chrX 19124601 intergenic CG15882 -,tgy - chrX_14_19120001 chrX_19120001 RAL-361 4468 chrX 19125643 19125717 chrX 19125822 19125896 25 179 3.5 6.5 5.0 4.2 253 chrX 19125643 exon tgy - chrX 19125770 intron tgy - chrX 19125896 intron tgy - chrX_25_19125001 chrX_19125001 RAL-361 4469 chrX 19136513 19136581 chrX 19143483 19143534 412 22 6967 6.5 0.5 3.5 4.9 7021 chrX 19136513 intergenic not near genes chrX 19140024 intergenic not near genes chrX 19143534 3` UTR RhoGAP18B - chrX_22_19140001 chrX_19140001 RAL-361 4470 chrX 19352465 19352473 chrX 19370521 19370528 4 18056 27.0 12.5 19.8 0.2 18063 chrX 19352465 intergenic not near genes chrX 19361496 intron kek5 + chrX 19370528 intron kek5 + chrX_4_19360001 chrX_19360001 RAL-361 4471 chrX 19356950 19357020 chrX 19358441 19358529 NOF 24 1501 6.5 0.0 3.2 5.7 1579 chrX 19356950 intron kek5 + chrX 19357740 intron kek5 + chrX 19358529 intron kek5 + chrX_24_19355001 chrX_19355001 RAL-361 4472 chrX 19380120 19380178 chrX 19380411 19380469 pogo 23 290 13.0 5.5 9.2 2.3 349 chrX 19380120 intron kek5 + chrX 19380294 intron kek5 + chrX 19380469 intron kek5 + chrX_23_19380001 chrX_19380001 RAL-361 4473 chrX 19437238 19437277 chrX 19444807 19444848 Idefix 10 7569 8.5 8.5 8.5 1.1 7610 chrX 19437238 intron kek5 + chrX 19441043 intron kek5 + chrX 19444848 intron kek5 + chrX_10_19440001 chrX_19440001 RAL-361 4474 chrX 19461095 19461125 chrX 19461241 19461271 9 145 9.0 5.5 7.2 1.1 176 chrX 19461095 intron kek5 + chrX 19461183 intron kek5 + chrX 19461271 intron kek5 + chrX_9_19460001 chrX_19460001 RAL-361 4475 chrX 19461131 19461169 chrX 19461239 19461315 15 140 6.0 5.0 5.5 2.3 184 chrX 19461131 intron kek5 + chrX 19461223 intron kek5 + chrX 19461315 intron kek5 + chrX_15_19460001 chrX_19460001 RAL-361 4476 chrX 19472079 19472142 chrX 19472700 19472761 jockey 14 620 8.0 7.5 7.8 1.6 682 chrX 19472079 intergenic kek5 + chrX 19472420 intergenic not near genes chrX 19472761 intergenic not near genes chrX_14_19470001 chrX_19470001 RAL-361 4477 chrX 19541376 19541447 chrX 19541503 19541577 24 128 7.0 9.0 8.0 2.7 201 chrX 19541376 intron CG32532 - chrX 19541476 intron CG32532 - chrX 19541577 intron CG32532 - chrX_24_19540001 chrX_19540001 RAL-361 4478 chrX 19553452 19553492 chrX 19553578 19553618 12 126 7.5 15.0 11.2 1.0 166 chrX 19553452 intergenic not near genes chrX 19553535 intergenic not near genes chrX 19553618 intergenic not near genes chrX_12_19550001 chrX_19550001 RAL-361 4479 chrX 19593904 19593974 chrX 19594039 19594109 26 135 5.5 5.5 5.5 4.0 205 chrX 19593904 exon CG14205 + chrX 19594006 intron CG14205 + chrX 19594109 exon CG14205 + chrX_26_19590001 chrX_19590001 RAL-361 4480 chrX 19661980 19662057 chrX 19662253 19662330 38 272 4.0 10.0 7.0 4.8 350 chrX 19661980 intron CG14223 - chrX 19662155 intron CG14223 - chrX 19662330 intron CG14223 - chrX_38_19660001 chrX_19660001 RAL-361 4481 chrX 19689369 19689436 chrX 19689497 19689563 19 128 9.5 11.0 10.2 1.7 194 chrX 19689369 intergenic Mer -,CG14227 - chrX 19689466 intergenic Mer - chrX 19689563 intergenic Mer - chrX_19_19685001 chrX_19685001 RAL-361 4482 chrX 19710029 19710090 chrX 19711861 19711926 S-element 14 1830 9.5 8.0 8.8 1.4 1897 chrX 19710029 intron meso18E - chrX 19710978 intron meso18E - chrX 19711926 intron meso18E - chrX_14_19710001 chrX_19710001 RAL-361 4483 chrX 19797304 19797340 chrX 19804667 19804703 Stalker4 15 7361 14.0 6.0 10.0 1.4 7399 chrX 19797304 intergenic not near genes chrX 19801004 intergenic not near genes chrX 19804703 intergenic not near genes chrX_15_19800001 chrX_19800001 RAL-361 4484 chrX 19838462 19838525 chrX 19838590 19838653 11 125 11.5 18.5 15.0 0.7 191 chrX 19838462 intron pico - chrX 19838558 intron pico - chrX 19838653 intron pico - chrX_11_19835001 chrX_19835001 RAL-361 4485 chrX 19855955 19856000 chrX 19856082 19856112 12 125 10.0 6.0 8.0 1.3 157 chrX 19855955 exon Nup205 + chrX 19856034 intron Nup205 + chrX 19856112 exon Nup205 + chrX_12_19855001 chrX_19855001 RAL-361 4486 chrX 19873652 19873671 chrX 19873793 19873812 10 141 6.0 0.0 3.0 2.5 160 chrX 19873652 intron Hers + chrX 19873732 intron Hers + chrX 19873812 intron Hers + chrX_10_19870001 chrX_19870001 RAL-361 4487 chrX 19880340 19880393 chrX 19880509 19880562 17 169 6.0 10.5 8.2 1.8 222 chrX 19880340 intron Hers + chrX 19880451 intron Hers + chrX 19880562 intron Hers + chrX_17_19880001 chrX_19880001 RAL-361 4488 chrX 19881409 19881483 chrX 19881536 19881593 20 128 4.5 6.0 5.2 3.2 184 chrX 19881409 intron Hers + chrX 19881501 intron Hers + chrX 19881593 intron Hers + chrX_20_19880001 chrX_19880001 RAL-361 4489 chrX 19884053 19884061 chrX 19884179 19884187 4 126 15.5 8.0 11.8 0.3 134 chrX 19884053 intron Hers + chrX 19884120 intron Hers + chrX 19884187 intron Hers + chrX_4_19880001 chrX_19880001 RAL-361 4490 chrX 19884073 19884115 chrX 19884174 19884213 8 115 7.5 8.0 7.8 0.9 140 chrX 19884073 intron Hers + chrX 19884143 intron Hers + chrX 19884213 intron Hers + chrX_8_19880001 chrX_19880001 RAL-361 4491 chrX 19971782 19971825 chrX 19971899 19971951 12 124 7.5 9.0 8.2 1.3 169 chrX 19971782 intergenic not near genes chrX 19971866 intergenic not near genes chrX 19971951 intergenic not near genes chrX_12_19970001 chrX_19970001 RAL-361 4492 chrX 19984497 19984570 chrX 19984630 19984704 19 134 1.5 5.5 3.5 4.2 207 chrX 19984497 intergenic not near genes chrX 19984600 intergenic not near genes chrX 19984704 intergenic not near genes chrX_19_19980001 chrX_19980001 RAL-361 4493 chrX 19992394 19992422 chrX 19992495 19992544 6 120 9.5 11.0 10.2 0.5 150 chrX 19992394 intergenic not near genes chrX 19992469 intergenic not near genes chrX 19992544 intergenic not near genes chrX_6_19990001 chrX_19990001 RAL-361 4494 chrX 20041490 20041559 chrX 20041620 20041689 23 130 8.0 7.5 7.8 2.6 199 chrX 20041490 intron Dop2R - chrX 20041590 intron Dop2R - chrX 20041689 intron Dop2R - chrX_23_20040001 chrX_20040001 RAL-361 4495 chrX 20058708 20058717 chrX 20058979 20058988 4 271 16.5 9.5 13.0 0.3 280 chrX 20058708 intron Dop2R - chrX 20058848 intron Dop2R - chrX 20058988 intron Dop2R - chrX_4_20055001 chrX_20055001 RAL-361 4496 chrX 20058724 20058736 chrX 20058978 20059007 7 267 13.0 9.5 11.2 0.6 283 chrX 20058724 intron Dop2R - chrX 20058866 intron Dop2R - chrX 20059007 intron Dop2R - chrX_7_20055001 chrX_20055001 RAL-361 4497 chrX 20099059 20099084 chrX 20099183 20099194 5 120 8.5 6.0 7.2 0.6 135 chrX 20099059 intergenic not near genes chrX 20099126 intergenic not near genes chrX 20099194 intergenic not near genes chrX_5_20095001 chrX_20095001 RAL-361 4498 chrX 20103918 20103980 chrX 20104048 20104112 20 138 4.0 7.0 5.5 3.1 194 chrX 20103918 intergenic not near genes chrX 20104015 intergenic not near genes chrX 20104112 intergenic not near genes chrX_20_20100001 chrX_20100001 RAL-361 4499 chrX 20125350 20125394 chrX 20125482 20125526 14 132 5.5 16.5 11.0 1.2 176 chrX 20125350 intergenic CG34331 + chrX 20125438 intergenic CG34331 + chrX 20125526 intergenic CG34331 + chrX_14_20125001 chrX_20125001 RAL-361 4500 chrX 20132255 20132308 chrX 20132388 20132441 18 130 8.0 8.5 8.2 2.0 186 chrX 20132255 intergenic not near genes chrX 20132348 intergenic not near genes chrX 20132441 intergenic not near genes chrX_18_20130001 chrX_20130001 RAL-361 4501 chrX 20144294 20144311 chrX 20144411 20144441 6 128 0.0 11.0 5.5 0.9 147 chrX 20144294 intergenic not near genes chrX 20144368 intergenic not near genes chrX 20144441 intergenic not near genes chrX_6_20140001 chrX_20140001 RAL-361 4502 chrX 20144805 20144839 chrX 20145020 20145059 8 219 13.0 8.5 10.8 0.7 254 chrX 20144805 intergenic not near genes chrX 20144932 intergenic not near genes chrX 20145059 intergenic not near genes chrX_8_20140001 chrX_20140001 RAL-361 4503 chrX 20144840 20144864 chrX 20145013 20145084 10 215 9.0 7.5 8.2 1.1 244 chrX 20144840 intergenic not near genes chrX 20144962 intergenic not near genes chrX 20145084 intergenic not near genes chrX_10_20140001 chrX_20140001 RAL-361 4504 chrX 20271453 20271528 chrX 20271595 20271665 17 140 7.5 0.0 3.8 3.5 212 chrX 20271453 intergenic not near genes chrX 20271559 intergenic not near genes chrX 20271665 intergenic not near genes chrX_17_20270001 chrX_20270001 RAL-361 4505 chrX 20279701 20279775 chrX 20279832 20279906 24 131 6.5 5.0 5.8 3.5 205 chrX 20279701 intergenic not near genes chrX 20279804 intergenic not near genes chrX 20279906 intergenic not near genes chrX_24_20275001 chrX_20275001 RAL-361 4506 chrX 20312843 20312907 chrX 20312971 20313035 18 128 9.0 6.0 7.5 2.1 192 chrX 20312843 intron CG1504 - chrX 20312939 intron CG1504 - chrX 20313035 intron CG1504 - chrX_18_20310001 chrX_20310001 RAL-361 4507 chrX 20314225 20314258 chrX 20314357 20314365 5 123 4.0 15.0 9.5 0.5 140 chrX 20314225 intron CG1504 - chrX 20314295 intron CG1504 - chrX 20314365 intron CG1504 - chrX_5_20310001 chrX_20310001 RAL-361 4508 chrX 20367662 20367716 chrX 20367832 20367881 11 168 11.5 5.5 8.5 1.2 219 chrX 20367662 intergenic not near genes chrX 20367772 intergenic not near genes chrX 20367881 intergenic not near genes chrX_11_20365001 chrX_20365001 RAL-361 4509 chrX 20369282 20369341 chrX 20369416 20369475 22 133 3.5 7.0 5.2 3.5 193 chrX 20369282 intergenic not near genes chrX 20369378 intergenic not near genes chrX 20369475 intergenic not near genes chrX_22_20365001 chrX_20365001 RAL-361 4510 chrX 20377275 20377338 chrX 20378792 20378844 hobo 7 1515 9.0 9.0 9.0 0.7 1569 chrX 20377275 intergenic not near genes chrX 20378060 intergenic not near genes chrX 20378844 intergenic not near genes chrX_7_20375001 chrX_20375001 RAL-361 4511 chrX 20415021 20415083 chrX 20415152 20415223 11 136 0.0 0.0 0.0 11.0 202 chrX 20415021 intergenic not near genes chrX 20415122 intergenic not near genes chrX 20415223 intergenic not near genes chrX_11_20415001 chrX_20415001 RAL-361 4512 chrX 20427097 20427136 chrX 20427274 20427313 12 177 70.0 70.5 70.2 0.2 216 chrX 20427097 intergenic CG15456 -,CG11710 - chrX 20427205 intergenic CG15456 -,CG11710 - chrX 20427313 intergenic CG11710 -,CG15456 - chrX_12_20425001 chrX_20425001 RAL-361 4513 chrX 20426191 20426197 chrX 20428335 20428342 7 2145 47.5 61.0 54.2 0.1 2151 chrX 20426191 exon cactin + chrX 20427266 intergenic CG11710 -,CG15456 - chrX 20428342 exon CG11710 - chrX_7_20425001 chrX_20425001 RAL-361 4514 chrX 20426181 20426230 chrX 20428354 20428395 23 2166 66.0 54.5 60.2 0.4 2214 chrX 20426181 exon cactin + chrX 20427288 intergenic CG11710 -,CG15456 - chrX 20428395 exon CG11710 - chrX_23_20425001 chrX_20425001 RAL-361 4515 chrX 20443160 20443199 chrX 20443286 20443325 13 126 8.5 11.0 9.8 1.2 165 chrX 20443160 exon CG1695 + chrX 20443242 intron CG1695 + chrX 20443325 intron CG1695 + chrX_13_20440001 chrX_20440001 RAL-361 4516 chrX 20467972 20468035 chrX 20468111 20468167 15 138 8.5 0.0 4.2 2.9 195 chrX 20467972 intron GstT3 + chrX 20468070 intron GstT3 + chrX 20468167 intron GstT3 + chrX_15_20465001 chrX_20465001 RAL-361 4517 chrX 20484337 20484402 chrX 20484492 20484557 19 155 6.0 6.5 6.2 2.6 220 chrX 20484337 intron RhoGAP19D - chrX 20484447 intron RhoGAP19D - chrX 20484557 intron RhoGAP19D - chrX_19_20480001 chrX_20480001 RAL-361 4518 chrX 20493874 20493927 chrX 20494083 20494138 12 210 0.0 6.0 3.0 3.0 264 chrX 20493874 intron RhoGAP19D - chrX 20494006 intron RhoGAP19D - chrX 20494138 intron RhoGAP19D - chrX_12_20490001 chrX_20490001 RAL-361 4519 chrX 20504090 20504149 chrX 20505649 20505720 transib2 21 1567 10.0 9.0 9.5 2.0 1630 chrX 20504090 intron RhoGAP19D - chrX 20504905 intron RhoGAP19D - chrX 20505720 intron RhoGAP19D - chrX_21_20500001 chrX_20500001 RAL-361 4520 chrX 20526424 20526462 chrX 20526589 20526628 14 164 6.5 0.0 3.2 3.3 204 chrX 20526424 intergenic not near genes chrX 20526526 intergenic not near genes chrX 20526628 intergenic not near genes chrX_14_20525001 chrX_20525001 RAL-361 4521 chrX 20527924 20527932 chrX 20528067 20528075 5 143 1.5 8.0 4.8 0.9 151 chrX 20527924 exon CG42579 + chrX 20528000 3` UTR CG42579 + chrX 20528075 intergenic CG42579 + chrX_5_20525001 chrX_20525001 RAL-361 4522 chrX 20531644 20531686 chrX 20531784 20531826 16 140 4.0 3.5 3.8 3.3 182 chrX 20531644 intergenic not near genes chrX 20531735 intergenic not near genes chrX 20531826 intergenic not near genes chrX_16_20530001 chrX_20530001 RAL-361 4523 chrX 20546505 20546546 chrX 20546721 20546762 7 215 6.5 7.5 7.0 0.9 257 chrX 20546505 intron RunxB + chrX 20546634 intron RunxB + chrX 20546762 intron RunxB + chrX_7_20545001 chrX_20545001 RAL-361 4524 chrX 20575113 20575177 chrX 20575241 20575304 33 125 8.0 6.5 7.2 4.0 191 chrX 20575113 intergenic CG42580 + chrX 20575208 intergenic not near genes chrX 20575304 intergenic not near genes chrX_33_20575001 chrX_20575001 RAL-361 4525 chrX 20578036 20578106 chrX 20578165 20578235 17 122 4.0 6.0 5.0 2.8 199 chrX 20578036 intergenic not near genes chrX 20578136 intergenic not near genes chrX 20578235 intergenic not near genes chrX_17_20575001 chrX_20575001 RAL-361 4526 chrX 20581312 20581339 chrX 20581618 20581619 14 303 8.0 4.5 6.2 1.9 307 chrX 20581312 intergenic not near genes chrX 20581466 intergenic not near genes chrX 20581619 intergenic not near genes chrX_14_20580001 chrX_20580001 RAL-361 4527 chrX 20635385 20635447 chrX 20635601 20635663 16 216 2.5 10.5 6.5 2.1 278 chrX 20635385 intergenic not near genes chrX 20635524 intergenic not near genes chrX 20635663 intergenic not near genes chrX_16_20635001 chrX_20635001 RAL-361 4528 chrX 20679992 20680045 chrX 20680119 20680172 13 124 5.5 7.0 6.2 1.8 180 chrX 20679992 intergenic not near genes chrX 20680082 intergenic not near genes chrX 20680172 intergenic not near genes chrX_13_20680001 chrX_20680001 RAL-361 4529 chrX 20710413 20710425 chrX 20710529 20710552 6 125 2.5 0.5 1.5 2.4 139 chrX 20710413 intergenic not near genes chrX 20710482 intergenic not near genes chrX 20710552 intergenic not near genes chrX_6_20710001 chrX_20710001 RAL-361 4530 chrX 20741535 20741560 chrX 20741661 20741686 10 126 18.0 1.5 9.8 0.9 151 chrX 20741535 intergenic not near genes chrX 20741610 intergenic not near genes chrX 20741686 intergenic not near genes chrX_10_20740001 chrX_20740001 RAL-361 4531 chrX 20836007 20836072 chrX 20836136 20836210 20 136 4.5 6.5 5.5 3.1 203 chrX 20836007 intron shakB - chrX 20836108 intron shakB - chrX 20836210 intron shakB - chrX_20_20835001 chrX_20835001 RAL-361 4532 chrX 20836686 20836746 chrX 20844338 20844398 roo 15 7652 7.5 8.5 8.0 1.7 7712 chrX 20836686 intron shakB - chrX 20840542 intron shakB - chrX 20844398 intron shakB - chrX_15_20840001 chrX_20840001 RAL-361 4533 chrX 20940677 20940697 chrX 20942196 20942216 hobo 7 1519 15.5 10.5 13.0 0.5 1539 chrX 20940677 intergenic not near genes chrX 20941446 intergenic not near genes chrX 20942216 intergenic not near genes chrX_7_20940001 chrX_20940001 RAL-361 4534 chrX 20940701 20940712 chrX 20942205 20942231 hobo 8 1517 12.0 11.5 11.8 0.6 1530 chrX 20940701 intergenic not near genes chrX 20941466 intergenic not near genes chrX 20942231 intergenic not near genes chrX_8_20940001 chrX_20940001 RAL-361 4535 chrX 20948208 20948280 chrX 20948347 20948419 10 139 3.0 5.0 4.0 2.0 211 chrX 20948208 intergenic not near genes chrX 20948314 intergenic not near genes chrX 20948419 intergenic not near genes chrX_10_20945001 chrX_20945001 RAL-361 4536 chrX 20956921 20956955 chrX 20962416 20962450 I-element 12 5495 0.0 6.5 3.2 2.9 5529 chrX 20956921 intergenic not near genes chrX 20959686 intergenic not near genes chrX 20962450 intergenic Ser6 - chrX_12_20955001 chrX_20955001 RAL-361 4537 chrX 20974131 20974207 chrX 20974353 20974441 17 233 6.0 1.0 3.5 3.8 310 chrX 20974131 intergenic not near genes chrX 20974286 intergenic not near genes chrX 20974441 intergenic not near genes chrX_17_20970001 chrX_20970001 RAL-361 4538 chrX 20980988 20981050 chrX 20981141 20981203 18 153 7.0 8.0 7.5 2.1 215 chrX 20980988 intergenic not near genes chrX 20981096 intergenic not near genes chrX 20981203 intergenic not near genes chrX_18_20980001 chrX_20980001 RAL-361 4539 chrX 20988839 20988854 chrX 20988984 20988999 7 144 13.5 12.0 12.8 0.5 160 chrX 20988839 intergenic not near genes chrX 20988919 intergenic not near genes chrX 20988999 intergenic not near genes chrX_7_20985001 chrX_20985001 RAL-361 4540 chrX 20991115 20991121 chrX 20991245 20991251 4 130 10.0 4.0 7.0 0.5 136 chrX 20991115 intergenic not near genes chrX 20991183 intergenic not near genes chrX 20991251 intergenic not near genes chrX_4_20990001 chrX_20990001 RAL-361 4541 chrX 21009819 21009875 chrX 21009962 21010010 14 135 0.0 6.5 3.2 3.3 191 chrX 21009819 intergenic not near genes chrX 21009914 intergenic not near genes chrX 21010010 intergenic not near genes chrX_14_21005001 chrX_21005001 RAL-361 4542 chrX 21029751 21029807 chrX 21029942 21029998 11 191 0.5 10.0 5.2 1.8 247 chrX 21029751 3` UTR CG1529 - chrX 21029874 3` UTR CG1529 - chrX 21029998 3` UTR CG1529 - chrX_11_21025001 chrX_21025001 RAL-361 4543 chrX 21032160 21032165 chrX 21034929 21034934 1360 4 2769 24.0 26.0 25.0 0.2 2774 chrX 21032160 intergenic CG1529 - chrX 21033547 intergenic not near genes chrX 21034934 intergenic not near genes chrX_4_21030001 chrX_21030001 RAL-361 4544 chrX 21061822 21061890 chrX 21062356 21062424 roo 21 530 9.5 9.5 9.5 2.0 602 chrX 21061822 intron bves + chrX 21062123 intron bves + chrX 21062424 intron,3` UTR bves +,CG32512 - chrX_21_21060001 chrX_21060001 RAL-361 4545 chrX 20144570 20144584 chrX 21085233 21085247 9 940663 20.0 29.0 24.5 0.4 940677 chrX 20144570 intergenic not near genes chrX 20614908 intron RunxA - chrX 21085247 intergenic not near genes chrX_9_20610001 chrX_20610001 RAL-361 4546 chrX 21086100 21086153 chrX 21087179 21087232 jockey 22 1078 6.0 10.5 8.2 2.4 1132 chrX 21086100 intergenic not near genes chrX 21086666 intergenic not near genes chrX 21087232 intergenic not near genes chrX_22_21085001 chrX_21085001 RAL-361 4547 chrX 21087993 21088067 chrX 21088175 21088229 24 181 6.0 6.5 6.2 3.3 236 chrX 21087993 intergenic not near genes chrX 21088111 intergenic not near genes chrX 21088229 intergenic not near genes chrX_24_21085001 chrX_21085001 RAL-361 4548 chrX 21166090 21166163 chrX 21166218 21166294 17 127 4.5 3.5 4.0 3.4 204 chrX 21166090 intergenic not near genes chrX 21166192 intergenic not near genes chrX 21166294 intergenic not near genes chrX_17_21165001 chrX_21165001 RAL-361 4549 chrX 21197010 21197021 chrX 21197137 21197149 7 128 18.5 7.0 12.8 0.5 139 chrX 21197010 intergenic not near genes chrX 21197080 intergenic not near genes chrX 21197149 intergenic not near genes chrX_7_21195001 chrX_21195001 RAL-361 4550 chrX 21197023 21197039 chrX 21197136 21197166 4 121 15.0 6.5 10.8 0.3 143 chrX 21197023 intergenic not near genes chrX 21197094 intergenic not near genes chrX 21197166 intergenic not near genes chrX_4_21195001 chrX_21195001 RAL-361 4551 chrX 21197041 21197084 chrX 21197135 21197212 15 121 9.0 6.5 7.8 1.7 171 chrX 21197041 intergenic not near genes chrX 21197126 intergenic not near genes chrX 21197212 intergenic not near genes chrX_15_21195001 chrX_21195001 RAL-361 4552 chrX 21263168 21263204 chrX 21263303 21263347 12 142 2.0 9.5 5.8 1.8 179 chrX 21263168 intron CG32521 - chrX 21263258 intron CG32521 - chrX 21263347 intron CG32521 - chrX_12_21260001 chrX_21260001 RAL-361 4553 chrX 21303148 21303225 chrX 21303288 21303365 21 139 4.0 6.5 5.2 3.4 217 chrX 21303148 intron CG1718 - chrX 21303256 intron CG1718 - chrX 21303365 intron CG1718 - chrX_21_21300001 chrX_21300001 RAL-361 4554 chrX 21308829 21308873 chrX 21308984 21309048 8 172 5.5 0.0 2.8 2.1 219 chrX 21308829 exon CG1801 - chrX 21308938 intron CG1801 - chrX 21309048 intron CG1801 - chrX_8_21305001 chrX_21305001 RAL-361 4555 chrX 21328069 21328145 chrX 21328230 21328307 20 161 6.5 8.5 7.5 2.4 238 chrX 21328069 3` UTR CG1486 + chrX 21328188 intergenic CG1486 +,tty - chrX 21328307 intergenic CG1486 +,tty - chrX_20_21325001 chrX_21325001 RAL-361 4556 chrX 21410597 21410670 chrX 21410726 21410799 21 128 4.5 6.0 5.2 3.4 202 chrX 21410597 intergenic CR45003 - chrX 21410698 intergenic CR45003 - chrX 21410799 intergenic CR45003 - chrX_21_21410001 chrX_21410001 RAL-361 4557 chrX 21428295 21428369 chrX 21428533 21428609 25 239 7.5 7.0 7.2 3.0 314 chrX 21428295 intron CG42343 - chrX 21428452 intron CG42343 - chrX 21428609 intron CG42343 - chrX_25_21425001 chrX_21425001 RAL-361 4558 chrX 21429822 21429835 chrX 21429962 21429975 INE-1 7 140 2.0 20.5 11.2 0.6 153 chrX 21429822 intron CG42343 - chrX 21429898 intron CG42343 - chrX 21429975 intron CG42343 - chrX_7_21425001 chrX_21425001 RAL-361 4559 chrX 21439491 21439556 chrX 21439622 21439687 23 130 8.5 8.0 8.2 2.5 196 chrX 21439491 intron CG42343 - chrX 21439589 intron CG42343 - chrX 21439687 intron CG42343 - chrX_23_21435001 chrX_21435001 RAL-361 4560 chrX 21454815 21454871 chrX 21454949 21455005 28 134 4.0 7.0 5.5 4.3 190 chrX 21454815 intron CG42343 - chrX 21454910 intron CG42343 - chrX 21455005 intron CG42343 - chrX_28_21450001 chrX_21450001 RAL-361 4561 chrX 21455163 21455244 chrX 21455392 21455481 19 232 1.0 2.5 1.8 6.8 318 chrX 21455163 intron CG42343 - chrX 21455322 intron CG42343 - chrX 21455481 intron CG42343 - chrX_19_21455001 chrX_21455001 RAL-361 4562 chrX 21458641 21458718 chrX 21464127 21464204 Ivk 19 5486 7.0 6.5 6.8 2.4 5563 chrX 21458641 intergenic not near genes chrX 21461422 intergenic not near genes chrX 21464204 intergenic not near genes chrX_19_21460001 chrX_21460001 RAL-361 4563 chrX 21474362 21474435 chrX 21474778 21474851 1731 23 412 6.0 7.0 6.5 3.1 489 chrX 21474362 intergenic not near genes chrX 21474606 intergenic not near genes chrX 21474851 intergenic not near genes chrX_23_21470001 chrX_21470001 RAL-361 4564 chrX 21500513 21500589 chrX 21500764 21500840 6 251 1.5 4.5 3.0 1.5 327 chrX 21500513 intron CR45082 - chrX 21500676 intron CR45082 - chrX 21500840 intron CR45082 - chrX_6_21500001 chrX_21500001 RAL-361 4565 chrX 21516945 21516952 chrX 21517074 21517081 4 129 17.5 6.0 11.8 0.3 136 chrX 21516945 intron CR45082 - chrX 21517013 intron CR45082 - chrX 21517081 intron CR45082 - chrX_4_21515001 chrX_21515001 RAL-361 4566 chrX 21516960 21517010 chrX 21517073 21517119 17 125 7.0 6.0 6.5 2.3 159 chrX 21516960 intron CR45082 - chrX 21517040 intron CR45082 - chrX 21517119 intron CR45082 - chrX_17_21515001 chrX_21515001 RAL-361 4567 chrX 21565396 21565433 chrX 21565524 21565561 8 128 4.5 12.0 8.2 0.9 165 chrX 21565396 intergenic not near genes chrX 21565478 intergenic not near genes chrX 21565561 intergenic not near genes chrX_8_21565001 chrX_21565001 RAL-361 4568 chrX 21581509 21581560 chrX 21581640 21581691 12 131 1.0 0.0 0.5 8.0 182 chrX 21581509 intergenic not near genes chrX 21581600 intergenic not near genes chrX 21581691 intergenic not near genes chrX_12_21580001 chrX_21580001 RAL-361 4569 chrX 21595557 21595569 chrX 21598655 21598673 micropia 4 3102 12.0 11.5 11.8 0.3 3116 chrX 21595557 intergenic not near genes chrX 21597115 intergenic not near genes chrX 21598673 intergenic not near genes chrX_4_21595001 chrX_21595001 RAL-361 4570 chrX 21668212 21668280 chrX 21668347 21668415 17 132 46.5 45.0 45.8 0.4 203 chrX 21668212 intergenic not near genes chrX 21668314 intergenic not near genes chrX 21668415 intergenic not near genes chrX_17_21665001 chrX_21665001 RAL-361 4571 chrX 22448219 22448293 chrX 22448408 22448482 34 189 0.0 6.5 3.2 8.1 263 chrX 22448219 intron CG14615 - chrX 22448350 intron CG14615 - chrX 22448482 intron CG14615 - chrX_34_22445001 chrX_22445001 RAL-361 4572 chrX 22478874 22478894 chrX 22479057 22479077 10 183 0.0 9.5 4.8 1.7 203 chrX 22478874 intron CG12576 - chrX 22478976 intron CG12576 - chrX 22479077 intron CG12576 - chrX_10_22475001 chrX_22475001 RAL-361 4573 chrX 22522596 22522657 chrX 22525466 22525527 NOF 9 2870 6.5 8.5 7.5 1.1 2931 chrX 22522596 intron CG17600 + chrX 22524062 intron CG17600 + chrX 22525527 intron CG17600 + chrX_9_22520001 chrX_22520001 RAL-361 4574 chrX 22549722 22549762 chrX 22549957 22549997 16 235 16.0 6.0 11.0 1.3 275 chrX 22549722 intergenic not near genes chrX 22549860 intergenic not near genes chrX 22549997 intergenic not near genes chrX_16_22545001 chrX_22545001 RAL-361 4575 chrX 22564570 22564583 chrX 22575092 22575132 jockey 5 10527 23.0 7.0 15.0 0.3 10562 chrX 22564570 intergenic not near genes chrX 22569851 intergenic not near genes chrX 22575132 intergenic not near genes chrX_5_22565001 chrX_22565001 RAL-361 4576 chrX 22585464 22585524 chrX 22585597 22585658 17 134 7.0 0.0 3.5 3.8 194 chrX 22585464 intron Cda4 - chrX 22585561 intron Cda4 - chrX 22585658 intron Cda4 - chrX_17_22585001 chrX_22585001 RAL-361 4577 chrX 22660537 22660597 chrX 22660664 22660731 8 133 4.0 7.5 5.8 1.2 194 chrX 22660537 intron CR44997 + chrX 22660634 intron CR44997 + chrX 22660731 intron CR44997 + chrX_8_22660001 chrX_22660001 RAL-361 4578 chrX 22665758 22665817 chrX 22665872 22665946 22 126 6.5 7.5 7.0 2.8 188 chrX 22665758 intron CR44997 + chrX 22665852 intron CR44997 + chrX 22665946 intron CR44997 + chrX_22_22665001 chrX_22665001 RAL-361 4579 chrX 22681446 22681482 chrX 22688947 22688988 HMS-Beagle2 7 7505 8.0 5.5 6.8 0.9 7542 chrX 22681446 intron CR44997 + chrX 22685217 intron CR44997 + chrX 22688988 intron CR44997 + chrX_7_22685001 chrX_22685001 RAL-361 4580 chrX 22694306 22694352 chrX 22694447 22694493 9 141 3.5 7.5 5.5 1.4 187 chrX 22694306 intron CR44997 + chrX 22694400 intron CR44997 + chrX 22694493 intron CR44997 + chrX_9_22690001 chrX_22690001 RAL-361 4581 chrX 22697461 22697513 chrX 22701808 22701860 Juan 15 4347 7.0 8.0 7.5 1.8 4399 chrX 22697461 intron CR44997 + chrX 22699660 intron CR44997 + chrX 22701860 intron CR44997 + chrX_15_22695001 chrX_22695001 RAL-361 4582 chrX 22764327 22764398 chrX 22764473 22764544 20 146 2.0 4.5 3.2 4.8 217 chrX 22764327 intron CR44997 + chrX 22764436 intron CR44997 + chrX 22764544 intron,3` UTR CR44997 +,CR44109 - chrX_20_22760001 chrX_22760001 RAL-361 4583 chrX 22771463 22771537 chrX 22774803 22774825 297 19 3337 6.5 12.0 9.2 1.9 3362 chrX 22771463 intron CR44997 + chrX 22773144 intron CR44997 + chrX 22774825 intron CR44997 + chrX_19_22770001 chrX_22770001 RAL-361 4584 chrX 22811954 22812005 chrX 22816776 22816827 F-element 24 4822 8.5 8.5 8.5 2.5 4873 chrX 22811954 intergenic CG12446 - chrX 22814390 intergenic not near genes chrX 22816827 intergenic not near genes chrX_24_22810001 chrX_22810001 RAL-361 4585 chrX 22824218 22824434 chrX 22824394 22824617 33 180 0.5 0.5 0.5 22.0 399 chrX 22824218 intergenic fog - chrX 22824418 3` UTR fog - chrX 22824617 3` UTR fog - chrX_33_22820001 chrX_22820001 RAL-361 4586 chrX 22870828 22870844 chrX 22870968 22870985 4 141 19.5 5.5 12.5 0.3 157 chrX 22870828 intron,3` UTR CG42346 +,CR43656 - chrX 22870906 intron,3` UTR CG42346 +,CR43656 - chrX 22870985 intron,3` UTR CG42346 +,CR43656 - chrX_4_22870001 chrX_22870001 RAL-361 4587 chrX 22870847 22870894 chrX 22870960 22871025 9 137 7.5 5.0 6.2 1.2 178 chrX 22870847 intron,3` UTR CG42346 +,CR43656 - chrX 22870936 intron,3` UTR CG42346 +,CR43656 - chrX 22871025 intron,3` UTR CG42346 +,CR43656 - chrX_9_22870001 chrX_22870001 RAL-361 4588 chrX 22922470 22922534 chrX 22922600 22922664 10 123 0.5 7.0 3.8 2.1 194 chrX 22922470 intergenic not near genes chrX 22922567 intergenic not near genes chrX 22922664 intergenic not near genes chrX_10_22920001 chrX_22920001 RAL-361 4589 chrX 22967344 22967359 chrX 23154545 23154560 diver 6 187201 15.0 24.0 19.5 0.3 187216 chrX 22967344 intergenic not near genes chrX 23060952 intergenic not near genes chrX 23154560 intergenic not near genes chrX_6_23060001 chrX_23060001 RAL-361 4590 chrX 22987064 22987122 chrX 22989773 22989831 Burdock 20 2709 7.0 5.5 6.2 2.8 2767 chrX 22987064 intron,intron stnA -,stnB - chrX 22988448 intron,intron stnA -,stnB - chrX 22989831 intron,intron stnA -,stnB - chrX_20_22985001 chrX_22985001 RAL-361 4591 chrX 22996269 22996322 chrX 23003553 23003590 roo 28 7282 11.5 12.0 11.8 2.2 7321 chrX 22996269 intron,intron stnA -,stnB - chrX 22999930 intron,intron stnA -,stnB - chrX 23003590 intron,intron stnA -,stnB - chrX_28_22995001 chrX_22995001 RAL-361 4592 chrX 22967517 22967531 chrX 23154542 23154556 diver 5 187025 3.5 23.5 13.5 0.3 187039 chrX 22967517 intergenic not near genes chrX 23061036 intergenic not near genes chrX 23154556 intergenic not near genes chrX_5_23060001 chrX_23060001 RAL-361 4593 chrY 975742 975824 chrY 975872 975926 14 137 222.0 234.5 228.2 0.1 184 chrY 975742 intergenic not near genes chrY 975834 intergenic not near genes chrY 975926 intergenic not near genes chrY_14_975001 chrY_975001 RAL-361 4594 chrY 1419856 1419886 chrY 1420160 1420190 7 304 27.0 14.0 20.5 0.3 334 chrY 1419856 intergenic not near genes chrY 1420023 intergenic not near genes chrY 1420190 intergenic not near genes chrY_7_1420001 chrY_1420001 RAL-361 4595 chrY 1420589 1420639 chrY 1420748 1420765 5 152 18.0 19.0 18.5 0.3 176 chrY 1420589 intergenic not near genes chrY 1420677 intergenic not near genes chrY 1420765 intergenic not near genes chrY_5_1420001 chrY_1420001 RAL-361 4596 chrY 1445413 1445444 chrY 1447394 1447522 13 1986 32.5 13.5 23.0 0.5 2109 chrY 1445413 intergenic not near genes chrY 1446468 intergenic not near genes chrY 1447522 intergenic not near genes chrY_13_1445001 chrY_1445001 RAL-361 4597 chrY 3561955 3562032 chrY 3562088 3562165 5 133 7.5 8.0 7.8 0.6 210 chrY 3561955 intergenic not near genes chrY 3562060 intergenic not near genes chrY 3562165 intergenic not near genes chrY_5_3560001 chrY_3560001 RAL-361 4598 chrY 3664953 3665000 chrY 3665107 3665154 5 154 2.0 1.0 1.5 2.0 201 chrY 3664953 intergenic CG40948 + chrY 3665054 intergenic CG40948 + chrY 3665154 intergenic not near genes chrY_5_3665001 chrY_3665001 RAL-361