SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 47444 47481 chr2L 52569 52606 jockey 11 5120 14.0 8.0 11.0 0.9 5162 chr2L 47444 intron Cda5 - chr2L 50025 intron Cda5 - chr2L 52606 intron Cda5 - chr2L_11_50001 chr2L_50001 RAL-359 2 chr2L 91156 91205 chr2L 91252 91301 14 95 5.0 4.0 4.5 2.5 145 chr2L 91156 intergenic not near genes chr2L 91228 intergenic not near genes chr2L 91301 intergenic not near genes chr2L_14_90001 chr2L_90001 RAL-359 3 chr2L 119718 119745 chr2L 119815 119842 5 97 5.0 2.5 3.8 1.0 124 chr2L 119718 intron,intron CG11455 +,CG4822 - chr2L 119780 intron,intron CG11455 +,CG4822 - chr2L 119842 intron,exon CG11455 +,CG4822 - chr2L_5_115001 chr2L_115001 RAL-359 4 chr2L 163841 163877 chr2L 163929 163983 5 102 1.5 2.5 2.0 1.7 142 chr2L 163841 intron spen + chr2L 163912 intron spen + chr2L 163983 intron spen + chr2L_5_160001 chr2L_160001 RAL-359 5 chr2L 179443 179488 chr2L 179544 179591 11 102 1.5 2.5 2.0 3.7 148 chr2L 179443 intron spen + chr2L 179517 intron spen + chr2L 179591 intron spen + chr2L_11_175001 chr2L_175001 RAL-359 6 chr2L 180292 180309 chr2L 180480 180497 5 188 4.5 6.0 5.2 0.8 205 chr2L 180292 intron spen + chr2L 180394 intron spen + chr2L 180497 intron spen + chr2L_5_180001 chr2L_180001 RAL-359 7 chr2L 263284 263522 chr2L 263448 263607 10 146 1.5 1.5 1.5 4.0 323 chr2L 263284 intron,3` UTR CG3645 -,CG17075 - chr2L 263446 intron,3` UTR CG3645 -,CG17075 - chr2L 263607 intron,3` UTR CG3645 -,CG17075 - chr2L_10_260001 chr2L_260001 RAL-359 8 chr2L 297664 297714 chr2L 297784 297815 10 117 4.0 1.0 2.5 2.9 151 chr2L 297664 intergenic Hop +,Pi3K21B + chr2L 297740 intergenic Pi3K21B +,Hop + chr2L 297815 intergenic Pi3K21B +,Hop + chr2L_10_295001 chr2L_295001 RAL-359 9 chr2L 319888 319936 chr2L 319993 320041 20 104 6.5 7.5 7.0 2.5 153 chr2L 319888 intron Plc21C + chr2L 319964 intron Plc21C + chr2L 320041 intron Plc21C + chr2L_20_315001 chr2L_315001 RAL-359 10 chr2L 321774 321788 chr2L 321873 321883 13 103 6.5 17.0 11.8 1.0 109 chr2L 321774 intron Plc21C + chr2L 321828 intron Plc21C + chr2L 321883 intron Plc21C + chr2L_13_320001 chr2L_320001 RAL-359 11 chr2L 318773 318816 chr2L 323410 323453 18 4639 28.0 24.0 26.0 0.7 4680 chr2L 318773 intron,exon Plc21C +,CG11912 - chr2L 321113 intron,exon Plc21C +,CG11911 - chr2L 323453 intron Plc21C + chr2L_18_320001 chr2L_320001 RAL-359 12 chr2L 347866 347918 chr2L 355386 355438 blood 17 7517 3.5 3.0 3.2 4.0 7572 chr2L 347866 3` UTR Plc21C + chr2L 351652 intron Plc21C + chr2L 355438 3` UTR Plc21C + chr2L_17_350001 chr2L_350001 RAL-359 13 chr2L 371439 371449 chr2L 371538 371548 4 99 3.5 7.0 5.2 0.6 109 chr2L 371439 intergenic not near genes chr2L 371494 intergenic not near genes chr2L 371548 intergenic not near genes chr2L_4_370001 chr2L_370001 RAL-359 14 chr2L 544652 544860 chr2L 544729 544963 14 100 3.5 4.5 4.0 2.8 311 chr2L 544652 5` UTR Spp - chr2L 544808 intergenic Ets21C -,Spp -,nAChRbeta3 + chr2L 544963 3` UTR Ets21C - chr2L_14_540001 chr2L_540001 RAL-359 15 chr2L 601259 601286 chr2L 601361 601377 10 100 2.5 6.5 4.5 1.8 118 chr2L 601259 intergenic not near genes chr2L 601318 intergenic not near genes chr2L 601377 intergenic not near genes chr2L_10_600001 chr2L_600001 RAL-359 16 chr2L 630289 630328 chr2L 630400 630440 9 110 4.5 2.5 3.5 2.0 151 chr2L 630289 intergenic not near genes chr2L 630364 intergenic not near genes chr2L 630440 intergenic not near genes chr2L_9_630001 chr2L_630001 RAL-359 17 chr2L 743574 743609 chr2L 743713 743753 5 142 4.0 5.0 4.5 0.9 179 chr2L 743574 5` UTR Eaat2 - chr2L 743664 intron Eaat2 - chr2L 743753 intron Eaat2 - chr2L_5_740001 chr2L_740001 RAL-359 18 chr2L 764542 764593 chr2L 764643 764688 13 100 2.0 1.5 1.8 4.6 146 chr2L 764542 intergenic not near genes chr2L 764615 intergenic not near genes chr2L 764688 intergenic not near genes chr2L_13_760001 chr2L_760001 RAL-359 19 chr2L 770443 770483 chr2L 772244 772283 Bari1 9 1798 4.0 3.0 3.5 2.0 1840 chr2L 770443 intergenic not near genes chr2L 771363 intergenic not near genes chr2L 772283 intergenic CR44614 + chr2L_9_770001 chr2L_770001 RAL-359 20 chr2L 853305 853350 chr2L 853410 853456 9 102 4.0 2.0 3.0 2.2 151 chr2L 853305 intron kraken + chr2L 853380 intron kraken + chr2L 853456 intron kraken + chr2L_9_850001 chr2L_850001 RAL-359 21 chr2L 919917 919927 chr2L 920013 920023 5 96 1.0 5.5 3.2 1.2 106 chr2L 919917 intergenic not near genes chr2L 919970 intergenic not near genes chr2L 920023 intergenic not near genes chr2L_5_915001 chr2L_915001 RAL-359 22 chr2L 922445 922495 chr2L 922546 922591 14 99 4.0 2.5 3.2 3.3 146 chr2L 922445 intergenic CG4341 + chr2L 922518 intergenic CG4341 + chr2L 922591 intergenic CG4341 + chr2L_14_920001 chr2L_920001 RAL-359 23 chr2L 931435 931478 chr2L 931532 931552 6 75 1.5 5.5 3.5 1.3 117 chr2L 931435 intron CG4341 + chr2L 931494 intron CG4341 + chr2L 931552 intron CG4341 + chr2L_6_930001 chr2L_930001 RAL-359 24 chr2L 935936 935973 chr2L 936033 936054 10 97 3.5 1.5 2.5 2.9 118 chr2L 935936 intron CG4341 + chr2L 935995 intron CG4341 + chr2L 936054 intron CG4341 + chr2L_10_935001 chr2L_935001 RAL-359 25 chr2L 964544 964566 chr2L 964648 964670 5 104 3.5 4.0 3.8 1.0 126 chr2L 964544 intergenic not near genes chr2L 964607 intergenic not near genes chr2L 964670 intergenic not near genes chr2L_5_960001 chr2L_960001 RAL-359 26 chr2L 976867 976894 chr2L 984523 984541 roo 7 7655 6.0 0.0 3.0 1.8 7674 chr2L 976867 intergenic not near genes chr2L 980704 intergenic not near genes chr2L 984541 intergenic not near genes chr2L_7_980001 chr2L_980001 RAL-359 27 chr2L 1025087 1025121 chr2L 1025190 1025209 7 96 4.0 5.0 4.5 1.3 122 chr2L 1025087 intron IA-2 - chr2L 1025148 intron IA-2 - chr2L 1025209 intron IA-2 - chr2L_7_1025001 chr2L_1025001 RAL-359 28 chr2L 1038606 1038642 chr2L 1038693 1038735 11 94 4.5 3.5 4.0 2.2 129 chr2L 1038606 intron,3` UTR IA-2 -,CG4415 + chr2L 1038670 intron,3` UTR IA-2 -,CG4415 + chr2L 1038735 intron IA-2 - chr2L_11_1035001 chr2L_1035001 RAL-359 29 chr2L 1065514 1065522 chr2L 1065626 1065634 5 112 8.5 0.0 4.2 1.0 120 chr2L 1065514 intron S - chr2L 1065574 intron S - chr2L 1065634 intron S - chr2L_5_1065001 chr2L_1065001 RAL-359 30 chr2L 1065524 1065549 chr2L 1065624 1065661 9 109 5.0 0.0 2.5 2.6 137 chr2L 1065524 intron S - chr2L 1065592 intron S - chr2L 1065661 intron S - chr2L_9_1065001 chr2L_1065001 RAL-359 31 chr2L 1192663 1192697 chr2L 1192786 1192809 6 117 2.0 3.0 2.5 1.7 146 chr2L 1192663 intron CG5001 + chr2L 1192736 intron CG5001 + chr2L 1192809 intron CG5001 + chr2L_6_1190001 chr2L_1190001 RAL-359 32 chr2L 1199852 1199861 chr2L 1199980 1199989 4 128 1.0 4.0 2.5 1.1 137 chr2L 1199852 3` UTR CG43348 + chr2L 1199920 3` UTR CG43348 + chr2L 1199989 intergenic CG43348 +,CG43349 + chr2L_4_1195001 chr2L_1195001 RAL-359 33 chr2L 1220110 1220160 chr2L 1227596 1227646 blood 17 7485 4.0 2.5 3.2 4.0 7536 chr2L 1220110 intron CG42329 + chr2L 1223878 intron CG42329 + chr2L 1227646 intron CG42329 + chr2L_17_1220001 chr2L_1220001 RAL-359 34 chr2L 1261209 1261260 chr2L 1261310 1261328 8 95 3.0 4.0 3.5 1.8 119 chr2L 1261209 intron robo3 + chr2L 1261268 intron robo3 + chr2L 1261328 intron robo3 + chr2L_8_1260001 chr2L_1260001 RAL-359 35 chr2L 1265699 1265706 chr2L 1265806 1265813 5 107 3.0 3.0 3.0 1.2 114 chr2L 1265699 intron robo3 + chr2L 1265756 intron robo3 + chr2L 1265813 intron robo3 + chr2L_5_1265001 chr2L_1265001 RAL-359 36 chr2L 1322004 1322038 chr2L 1322113 1322140 7 106 4.0 2.5 3.2 1.7 136 chr2L 1322004 intergenic not near genes chr2L 1322072 intergenic not near genes chr2L 1322140 intergenic not near genes chr2L_7_1320001 chr2L_1320001 RAL-359 37 chr2L 1512893 1512940 chr2L 1512999 1513046 12 104 2.5 3.5 3.0 3.0 153 chr2L 1512893 intergenic not near genes chr2L 1512970 intergenic not near genes chr2L 1513046 intergenic not near genes chr2L_12_1510001 chr2L_1510001 RAL-359 38 chr2L 1570682 1570711 chr2L 1573574 1573603 F-element 5 2892 5.0 4.0 4.5 0.9 2921 chr2L 1570682 intron haf + chr2L 1572142 intron haf + chr2L 1573603 intron haf + chr2L_5_1570001 chr2L_1570001 RAL-359 39 chr2L 1591867 1591888 chr2L 1591971 1591992 8 104 4.0 6.5 5.2 1.3 125 chr2L 1591867 intron haf + chr2L 1591930 intron haf + chr2L 1591992 intron haf + chr2L_8_1590001 chr2L_1590001 RAL-359 40 chr2L 1678958 1679009 chr2L 1686443 1686493 blood 7 7485 2.5 4.5 3.5 1.6 7535 chr2L 1678958 intron chinmo + chr2L 1682726 intron chinmo + chr2L 1686493 intron chinmo + chr2L_7_1680001 chr2L_1680001 RAL-359 41 chr2L 1711372 1711383 chr2L 1711690 1711727 mdg3 5 333 4.5 5.5 5.0 0.8 355 chr2L 1711372 3` UTR,3` UTR mRpL48 +,frtz - chr2L 1711550 3` UTR frtz - chr2L 1711727 3` UTR frtz - chr2L_5_1710001 chr2L_1710001 RAL-359 42 chr2L 1714871 1714896 chr2L 1714964 1714998 8 99 0.0 8.5 4.2 1.5 127 chr2L 1714871 intron frtz - chr2L 1714934 intron frtz - chr2L 1714998 intron frtz - chr2L_8_1710001 chr2L_1710001 RAL-359 43 chr2L 1795431 1795476 chr2L 1795539 1795584 11 106 5.5 1.5 3.5 2.4 153 chr2L 1795431 intergenic not near genes chr2L 1795508 intergenic not near genes chr2L 1795584 intergenic not near genes chr2L_11_1795001 chr2L_1795001 RAL-359 44 chr2L 1828995 1829010 chr2L 1829087 1829114 6 102 1.0 5.0 3.0 1.5 119 chr2L 1828995 intergenic not near genes chr2L 1829054 intergenic not near genes chr2L 1829114 intergenic not near genes chr2L_6_1825001 chr2L_1825001 RAL-359 45 chr2L 1849311 1849342 chr2L 1849422 1849443 5 109 0.0 0.0 0.0 5.0 132 chr2L 1849311 intron wry + chr2L 1849377 intron wry + chr2L 1849443 intron wry + chr2L_5_1845001 chr2L_1845001 RAL-359 46 chr2L 1925472 1925501 chr2L 1925566 1925598 9 97 5.0 3.5 4.2 1.7 126 chr2L 1925472 intron CG7337 + chr2L 1925535 intron CG7337 + chr2L 1925598 intron CG7337 + chr2L_9_1925001 chr2L_1925001 RAL-359 47 chr2L 1933642 1933683 chr2L 1933743 1933784 5 101 0.0 2.0 1.0 2.5 142 chr2L 1933642 intron CG7337 + chr2L 1933713 intron CG7337 + chr2L 1933784 intron CG7337 + chr2L_5_1930001 chr2L_1930001 RAL-359 48 chr2L 1944287 1944309 chr2L 1944384 1944406 7 96 6.0 1.5 3.8 1.5 119 chr2L 1944287 intergenic CG7337 + chr2L 1944346 intergenic not near genes chr2L 1944406 intergenic not near genes chr2L_7_1940001 chr2L_1940001 RAL-359 49 chr2L 1947849 1947885 chr2L 1947962 1947998 8 107 5.5 2.0 3.8 1.7 149 chr2L 1947849 intergenic not near genes chr2L 1947924 intergenic not near genes chr2L 1947998 intergenic not near genes chr2L_8_1945001 chr2L_1945001 RAL-359 50 chr2L 2100381 2100408 chr2L 2109537 2109563 roo 7 9163 7.0 6.0 6.5 0.9 9182 chr2L 2100381 intron dpr3 - chr2L 2104972 intron dpr3 - chr2L 2109563 intron dpr3 - chr2L_7_2100001 chr2L_2100001 RAL-359 51 chr2L 2262292 2262312 chr2L 2262389 2262409 4 97 4.5 2.0 3.2 1.0 117 chr2L 2262292 intergenic not near genes chr2L 2262350 intergenic not near genes chr2L 2262409 intergenic not near genes chr2L_4_2260001 chr2L_2260001 RAL-359 52 chr2L 2266251 2266257 chr2L 2266683 2266689 4 432 5.5 0.0 2.8 1.1 438 chr2L 2266251 intergenic not near genes chr2L 2266470 intergenic not near genes chr2L 2266689 intergenic not near genes chr2L_4_2265001 chr2L_2265001 RAL-359 53 chr2L 2290568 2290612 chr2L 2290664 2290708 6 96 1.5 8.0 4.8 1.0 140 chr2L 2290568 exon robl22E - chr2L 2290638 5` UTR robl22E - chr2L 2290708 5` UTR robl22E - chr2L_6_2290001 chr2L_2290001 RAL-359 54 chr2L 2311062 2311080 chr2L 2311178 2311193 7 116 2.0 3.0 2.5 2.0 131 chr2L 2311062 intron CG9967 - chr2L 2311128 intron CG9967 - chr2L 2311193 intron CG9967 - chr2L_7_2310001 chr2L_2310001 RAL-359 55 chr2L 2317111 2317130 chr2L 2317302 2317321 7 190 23.5 19.5 21.5 0.3 210 chr2L 2317111 intron,intron CG9967 -,eys + chr2L 2317216 intron,intron CG9967 -,eys + chr2L 2317321 intron,intron CG9967 -,eys + chr2L_7_2315001 chr2L_2315001 RAL-359 56 chr2L 2330859 2330888 chr2L 2330968 2330997 5 109 2.0 4.5 3.2 1.2 138 chr2L 2330859 intron,intron CG9967 -,eys + chr2L 2330928 intron,intron CG9967 -,eys + chr2L 2330997 intron,intron CG9967 -,eys + chr2L_5_2330001 chr2L_2330001 RAL-359 57 chr2L 2355290 2355320 chr2L 2355410 2355424 6 115 6.0 0.0 3.0 1.5 134 chr2L 2355290 intron,intron CG9967 -,eys + chr2L 2355357 intron,intron CG9967 -,eys + chr2L 2355424 intron,intron CG9967 -,eys + chr2L_6_2355001 chr2L_2355001 RAL-359 58 chr2L 2372343 2372403 chr2L 2372449 2372449 5 92 0.0 2.5 1.2 2.3 106 chr2L 2372343 intergenic CG3609 - chr2L 2372396 intergenic CG3609 - chr2L 2372449 intergenic CG3609 - chr2L_5_2370001 chr2L_2370001 RAL-359 59 chr2L 2427357 2427401 chr2L 2427463 2427507 14 106 3.0 1.0 2.0 4.7 150 chr2L 2427357 3` UTR CR44912 - chr2L 2427432 3` UTR CR44912 - chr2L 2427507 3` UTR CR44912 - chr2L_14_2425001 chr2L_2425001 RAL-359 60 chr2L 2504207 2504233 chr2L 2504305 2504326 10 97 3.0 4.5 3.8 2.1 119 chr2L 2504207 intergenic not near genes chr2L 2504266 intergenic not near genes chr2L 2504326 intergenic not near genes chr2L_10_2500001 chr2L_2500001 RAL-359 61 chr2L 2552727 2552766 chr2L 2552827 2552866 8 99 2.0 2.5 2.2 2.5 139 chr2L 2552727 exon CG3515 - chr2L 2552796 5` UTR CG3515 - chr2L 2552866 intergenic CG3515 - chr2L_8_2550001 chr2L_2550001 RAL-359 62 chr2L 2639122 2639165 chr2L 2639218 2639261 8 96 3.0 2.5 2.8 2.1 139 chr2L 2639122 intergenic not near genes chr2L 2639192 intergenic not near genes chr2L 2639261 intergenic not near genes chr2L_8_2635001 chr2L_2635001 RAL-359 63 chr2L 2653057 2653112 chr2L 2654661 2654715 5 1606 26.5 26.0 26.2 0.2 1658 chr2L 2653057 5` UTR Prosbeta4R1 + chr2L 2653886 3` UTR Prosbeta4R1 + chr2L 2654715 exon Or23a + chr2L_5_2650001 chr2L_2650001 RAL-359 64 chr2L 2667611 2667642 chr2L 2667710 2667716 4 92 6.0 6.0 6.0 0.6 105 chr2L 2667611 intergenic not near genes chr2L 2667664 intergenic not near genes chr2L 2667716 intergenic not near genes chr2L_4_2665001 chr2L_2665001 RAL-359 65 chr2L 2703427 2703441 chr2L 2703531 2703545 6 104 5.5 8.5 7.0 0.8 118 chr2L 2703427 intron CG31690 + chr2L 2703486 intron CG31690 + chr2L 2703545 intron CG31690 + chr2L_6_2700001 chr2L_2700001 RAL-359 66 chr2L 2734489 2734522 chr2L 2734584 2734619 5 96 4.5 2.5 3.5 1.1 130 chr2L 2734489 intron CG31689 + chr2L 2734554 intron CG31689 + chr2L 2734619 intron CG31689 + chr2L_5_2730001 chr2L_2730001 RAL-359 67 chr2L 2830399 2830412 chr2L 2830549 2830562 5 150 2.5 1.0 1.8 1.8 163 chr2L 2830399 intergenic Duox - chr2L 2830480 intergenic Duox - chr2L 2830562 intergenic Duox - chr2L_5_2830001 chr2L_2830001 RAL-359 68 chr2L 3049218 3049264 chr2L 3049324 3049370 19 105 4.0 4.5 4.2 3.7 152 chr2L 3049218 intron v(2)k05816 + chr2L 3049294 intron v(2)k05816 + chr2L 3049370 intron v(2)k05816 + chr2L_19_3045001 chr2L_3045001 RAL-359 69 chr2L 3072990 3073022 chr2L 3078233 3078265 copia 10 5243 0.5 2.5 1.5 4.0 5275 chr2L 3072990 intron toc - chr2L 3075628 intron toc - chr2L 3078265 intron toc - chr2L_10_3075001 chr2L_3075001 RAL-359 70 chr2L 3095395 3095452 chr2L 3095493 3095550 7 91 4.0 3.5 3.8 1.5 155 chr2L 3095395 intron toc - chr2L 3095472 intron toc - chr2L 3095550 intron toc - chr2L_7_3095001 chr2L_3095001 RAL-359 71 chr2L 3192193 3192216 chr2L 3192324 3192347 5 130 3.5 8.0 5.8 0.7 154 chr2L 3192193 exon CG34393 - chr2L 3192270 intron CG34393 - chr2L 3192347 intron CG34393 - chr2L_5_3190001 chr2L_3190001 RAL-359 72 chr2L 3192224 3192242 chr2L 3192320 3192373 6 125 1.5 7.5 4.5 1.1 149 chr2L 3192224 intron CG34393 - chr2L 3192298 intron CG34393 - chr2L 3192373 intron CG34393 - chr2L_6_3190001 chr2L_3190001 RAL-359 73 chr2L 3194153 3194178 chr2L 3194341 3194361 4 195 7.0 4.0 5.5 0.6 208 chr2L 3194153 intron CG34393 - chr2L 3194257 intron CG34393 - chr2L 3194361 intron CG34393 - chr2L_4_3190001 chr2L_3190001 RAL-359 74 chr2L 3233624 3233659 chr2L 3233795 3233830 12 171 1.5 2.5 2.0 4.0 206 chr2L 3233624 intergenic not near genes chr2L 3233727 intergenic not near genes chr2L 3233830 intergenic not near genes chr2L_12_3230001 chr2L_3230001 RAL-359 75 chr2L 3251474 3251518 chr2L 3259059 3259103 springer 8 7582 2.0 4.0 3.0 2.0 7629 chr2L 3251474 intergenic not near genes chr2L 3255288 intergenic not near genes chr2L 3259103 intergenic not near genes chr2L_8_3255001 chr2L_3255001 RAL-359 76 chr2L 3267589 3267610 chr2L 3267700 3267721 4 111 1.5 2.5 2.0 1.3 132 chr2L 3267589 intergenic not near genes chr2L 3267655 intergenic not near genes chr2L 3267721 intergenic not near genes chr2L_4_3265001 chr2L_3265001 RAL-359 77 chr2L 3271133 3271181 chr2L 3271275 3271316 16 139 4.0 2.5 3.2 3.8 183 chr2L 3271133 exon CG3347 + chr2L 3271224 exon CG3347 + chr2L 3271316 exon CG3347 + chr2L_16_3270001 chr2L_3270001 RAL-359 78 chr2L 3284360 3284396 chr2L 3284460 3284486 14 99 6.5 3.5 5.0 2.3 126 chr2L 3284360 intergenic not near genes chr2L 3284423 intergenic not near genes chr2L 3284486 intergenic not near genes chr2L_14_3280001 chr2L_3280001 RAL-359 79 chr2L 3291222 3291268 chr2L 3291322 3291363 12 98 4.0 6.0 5.0 2.0 141 chr2L 3291222 intergenic CG9664 - chr2L 3291292 3` UTR CG9664 - chr2L 3291363 3` UTR CG9664 - chr2L_12_3290001 chr2L_3290001 RAL-359 80 chr2L 3356660 3356709 chr2L 3356779 3356827 10 119 2.0 2.5 2.2 3.1 167 chr2L 3356660 intergenic not near genes chr2L 3356744 intergenic not near genes chr2L 3356827 intergenic not near genes chr2L_10_3355001 chr2L_3355001 RAL-359 81 chr2L 3388591 3388625 chr2L 3388845 3388886 pogo 8 260 4.5 5.0 4.8 1.4 295 chr2L 3388591 intergenic CG42460 - chr2L 3388738 intergenic CG42460 - chr2L 3388886 intergenic CG42460 -,CR44791 + chr2L_8_3385001 chr2L_3385001 RAL-359 82 chr2L 3393508 3393795 chr2L 3393606 3393897 6 96 7.5 1.5 4.5 1.1 389 chr2L 3393508 intergenic not near genes chr2L 3393702 intergenic not near genes chr2L 3393897 intergenic not near genes chr2L_6_3390001 chr2L_3390001 RAL-359 83 chr2L 3398573 3398615 chr2L 3398674 3398716 11 99 3.0 4.0 3.5 2.4 143 chr2L 3398573 3` UTR CG34175 + chr2L 3398644 3` UTR CG34175 + chr2L 3398716 intergenic CG34175 + chr2L_11_3395001 chr2L_3395001 RAL-359 84 chr2L 3498700 3498744 chr2L 3498797 3498841 5 97 4.0 4.5 4.2 1.0 141 chr2L 3498700 intron tim - chr2L 3498770 intron tim - chr2L 3498841 intron tim - chr2L_5_3495001 chr2L_3495001 RAL-359 85 chr2L 3508352 3508376 chr2L 3508450 3508474 8 98 0.0 6.0 3.0 2.0 122 chr2L 3508352 intergenic tim -,CR45299 + chr2L 3508413 intergenic CR45299 +,tim - chr2L 3508474 intergenic CR45299 +,tim - chr2L_8_3505001 chr2L_3505001 RAL-359 86 chr2L 3582882 3582912 chr2L 3582979 3582997 6 95 0.5 4.0 2.2 1.9 115 chr2L 3582882 intergenic not near genes chr2L 3582940 intergenic not near genes chr2L 3582997 intergenic not near genes chr2L_6_3580001 chr2L_3580001 RAL-359 87 chr2L 3627865 3627907 chr2L 3627973 3628015 4 108 3.0 1.5 2.2 1.2 150 chr2L 3627865 intron for - chr2L 3627940 intron for - chr2L 3628015 intron for - chr2L_4_3625001 chr2L_3625001 RAL-359 88 chr2L 3649776 3649812 chr2L 3654994 3655035 copia 6 5221 4.5 1.5 3.0 1.5 5259 chr2L 3649776 intron for - chr2L 3652406 intron for - chr2L 3655035 intron for - chr2L_6_3650001 chr2L_3650001 RAL-359 89 chr2L 3663300 3663338 chr2L 3663399 3663436 11 99 4.0 7.5 5.8 1.6 136 chr2L 3663300 5` UTR CG34340 + chr2L 3663368 intron CG34340 + chr2L 3663436 intron CG34340 + chr2L_11_3660001 chr2L_3660001 RAL-359 90 chr2L 3667950 3668063 chr2L 3668051 3668159 10 99 0.0 0.0 0.0 10.0 209 chr2L 3667950 intron CG34340 + chr2L 3668054 intron,3` UTR CG34340 +,Sfp24Ba - chr2L 3668159 intron,exon CG34340 +,Sfp24Ba - chr2L_10_3665001 chr2L_3665001 RAL-359 91 chr2L 3798064 3798091 chr2L 3803185 3803212 5 5122 39.0 26.0 32.5 0.1 5148 chr2L 3798064 exon CG3921 + chr2L 3800638 exon CG3921 + chr2L 3803212 intergenic Reph +,CG3921 + chr2L_5_3800001 chr2L_3800001 RAL-359 92 chr2L 3819607 3819621 chr2L 3819703 3819717 7 96 4.0 6.0 5.0 1.2 110 chr2L 3819607 intergenic not near genes chr2L 3819662 intergenic not near genes chr2L 3819717 intergenic not near genes chr2L_7_3815001 chr2L_3815001 RAL-359 93 chr2L 3889040 3889069 chr2L 3889149 3889178 4 109 4.0 3.0 3.5 0.9 138 chr2L 3889040 intron capu - chr2L 3889109 intron capu - chr2L 3889178 intron capu - chr2L_4_3885001 chr2L_3885001 RAL-359 94 chr2L 3897952 3897992 chr2L 3898161 3898201 4 208 4.5 1.5 3.0 1.0 249 chr2L 3897952 intron capu - chr2L 3898076 intron capu - chr2L 3898201 intron capu - chr2L_4_3895001 chr2L_3895001 RAL-359 95 chr2L 3929109 3929121 chr2L 3929214 3929226 6 105 5.5 3.0 4.2 1.2 117 chr2L 3929109 intron fred - chr2L 3929168 intron fred - chr2L 3929226 intron fred - chr2L_6_3925001 chr2L_3925001 RAL-359 96 chr2L 3943776 3943822 chr2L 3943887 3943933 9 111 4.0 3.0 3.5 2.0 157 chr2L 3943776 intron fred - chr2L 3943854 intron fred - chr2L 3943933 intron fred - chr2L_9_3940001 chr2L_3940001 RAL-359 97 chr2L 3963024 3963066 chr2L 3963467 3963506 8 442 1.5 2.5 2.0 2.7 482 chr2L 3963024 intron fred - chr2L 3963265 intron fred - chr2L 3963506 intron fred - chr2L_8_3960001 chr2L_3960001 RAL-359 98 chr2L 3985948 3986000 chr2L 3986046 3986098 7 98 1.0 2.5 1.8 2.5 150 chr2L 3985948 intron fred - chr2L 3986023 intron fred - chr2L 3986098 intron fred - chr2L_7_3985001 chr2L_3985001 RAL-359 99 chr2L 4001637 4001687 chr2L 4001755 4001804 4 118 1.0 2.0 1.5 1.6 167 chr2L 4001637 intergenic CR45344 + chr2L 4001720 intergenic CR45344 + chr2L 4001804 intergenic CR45344 + chr2L_4_4000001 chr2L_4000001 RAL-359 100 chr2L 4008263 4008301 chr2L 4008367 4008406 10 104 1.0 2.5 1.8 3.6 143 chr2L 4008263 intergenic CG43773 +,CG43774 + chr2L 4008334 intergenic CG43774 +,CG43773 + chr2L 4008406 intergenic CG43774 +,CG43773 + chr2L_10_4005001 chr2L_4005001 RAL-359 101 chr2L 4066029 4066053 chr2L 4068873 4068896 Juan 6 2843 1.5 3.5 2.5 1.7 2867 chr2L 4066029 intron ed + chr2L 4067462 intron ed + chr2L 4068896 intron ed + chr2L_6_4065001 chr2L_4065001 RAL-359 102 chr2L 4124258 4124310 chr2L 4124358 4124431 7 126 2.0 0.0 1.0 3.5 173 chr2L 4124258 intergenic Sr-CI + chr2L 4124344 intergenic Sr-CI + chr2L 4124431 intergenic Sr-CI + chr2L_7_4120001 chr2L_4120001 RAL-359 103 chr2L 4166357 4166410 chr2L 4166460 4166513 14 102 1.5 3.5 2.5 4.0 156 chr2L 4166357 intergenic Or24a - chr2L 4166435 intergenic Or24a - chr2L 4166513 intergenic Or24a - chr2L_14_4165001 chr2L_4165001 RAL-359 104 chr2L 4184459 4184507 chr2L 4184797 4184846 7 339 1.0 7.0 4.0 1.4 387 chr2L 4184459 intergenic not near genes chr2L 4184652 intergenic not near genes chr2L 4184846 intergenic not near genes chr2L_7_4180001 chr2L_4180001 RAL-359 105 chr2L 4233525 4233575 chr2L 4233626 4233677 10 98 1.5 0.5 1.0 5.0 152 chr2L 4233525 intergenic not near genes chr2L 4233601 intergenic not near genes chr2L 4233677 intergenic not near genes chr2L_10_4230001 chr2L_4230001 RAL-359 106 chr2L 4260041 4260084 chr2L 4260177 4260220 6 132 6.5 4.0 5.2 1.0 179 chr2L 4260041 3` UTR CR44080 - chr2L 4260130 3` UTR CR44080 - chr2L 4260220 3` UTR CR44080 - chr2L_6_4260001 chr2L_4260001 RAL-359 107 chr2L 4317880 4317912 chr2L 4317972 4317996 10 95 5.0 11.0 8.0 1.1 116 chr2L 4317880 intron tutl + chr2L 4317938 intron tutl + chr2L 4317996 intron tutl + chr2L_10_4315001 chr2L_4315001 RAL-359 108 chr2L 4340690 4340738 chr2L 4340796 4340807 11 102 4.0 1.5 2.8 2.9 117 chr2L 4340690 intron Atet + chr2L 4340748 intron Atet + chr2L 4340807 intron Atet + chr2L_11_4340001 chr2L_4340001 RAL-359 109 chr2L 4345471 4345509 chr2L 4345569 4345607 6 95 4.0 3.5 3.8 1.2 136 chr2L 4345471 3` UTR Atet + chr2L 4345539 3` UTR Atet + chr2L 4345607 3` UTR Atet + chr2L_6_4345001 chr2L_4345001 RAL-359 110 chr2L 4438984 4439024 chr2L 4439088 4439129 7 103 3.0 3.0 3.0 1.8 145 chr2L 4438984 intron CG15431 - chr2L 4439056 intron CG15431 - chr2L 4439129 5` UTR CG15431 - chr2L_7_4435001 chr2L_4435001 RAL-359 111 chr2L 4477136 4477184 chr2L 4477310 4477357 4 176 19.5 17.5 18.5 0.2 221 chr2L 4477136 intergenic ine -,dp - chr2L 4477246 intergenic dp -,ine - chr2L 4477357 intergenic dp -,ine - chr2L_4_4475001 chr2L_4475001 RAL-359 112 chr2L 4595853 4595876 chr2L 4595963 4595986 5 110 2.0 0.0 1.0 2.5 133 chr2L 4595853 intron dp - chr2L 4595920 intron dp - chr2L 4595986 intron dp - chr2L_5_4595001 chr2L_4595001 RAL-359 113 chr2L 4601685 4601730 chr2L 4609146 4609191 mdg1 15 7461 3.5 5.0 4.2 2.9 7506 chr2L 4601685 intron dp - chr2L 4605438 intron dp - chr2L 4609191 intron dp - chr2L_15_4605001 chr2L_4605001 RAL-359 114 chr2L 4617202 4617214 chr2L 4617304 4617318 4 104 4.0 3.0 3.5 0.9 116 chr2L 4617202 intergenic not near genes chr2L 4617260 intergenic not near genes chr2L 4617318 intergenic not near genes chr2L_4_4615001 chr2L_4615001 RAL-359 115 chr2L 4622034 4622041 chr2L 4622136 4622139 5 101 1.5 0.0 0.8 2.8 105 chr2L 4622034 intergenic not near genes chr2L 4622086 intergenic not near genes chr2L 4622139 intergenic not near genes chr2L_5_4620001 chr2L_4620001 RAL-359 116 chr2L 4693386 4693419 chr2L 4693573 4693606 4 187 5.0 0.5 2.8 1.1 220 chr2L 4693386 intergenic not near genes chr2L 4693496 intergenic not near genes chr2L 4693606 intergenic not near genes chr2L_4_4690001 chr2L_4690001 RAL-359 117 chr2L 4770091 4770137 chr2L 4770194 4770240 5 103 4.0 3.5 3.8 1.0 149 chr2L 4770091 intron CG15630 - chr2L 4770166 intron CG15630 - chr2L 4770240 intron CG15630 - chr2L_5_4770001 chr2L_4770001 RAL-359 118 chr2L 4781109 4781126 chr2L 4781239 4781244 4 125 6.0 0.0 3.0 1.0 135 chr2L 4781109 intron CG15630 - chr2L 4781176 intron CG15630 - chr2L 4781244 intron CG15630 - chr2L_4_4780001 chr2L_4780001 RAL-359 119 chr2L 4809660 4809681 chr2L 4809758 4809779 4 98 2.5 6.5 4.5 0.7 119 chr2L 4809660 intergenic not near genes chr2L 4809720 intergenic not near genes chr2L 4809779 intergenic not near genes chr2L_4_4805001 chr2L_4805001 RAL-359 120 chr2L 4858450 4858477 chr2L 4858569 4858596 8 119 4.0 7.0 5.5 1.2 146 chr2L 4858450 intron pog + chr2L 4858523 intron pog + chr2L 4858596 intron pog + chr2L_8_4855001 chr2L_4855001 RAL-359 121 chr2L 4869937 4869965 chr2L 4870043 4870071 7 105 4.5 2.0 3.2 1.7 134 chr2L 4869937 intron pog + chr2L 4870004 intron pog + chr2L 4870071 intron pog + chr2L_7_4870001 chr2L_4870001 RAL-359 122 chr2L 4917289 4917334 chr2L 4917399 4917441 10 106 2.5 2.0 2.2 3.1 152 chr2L 4917289 intron hoe1 - chr2L 4917365 intron hoe1 - chr2L 4917441 intron hoe1 - chr2L_10_4915001 chr2L_4915001 RAL-359 123 chr2L 4918149 4918191 chr2L 4923242 4923284 jockey 12 5093 6.0 6.5 6.2 1.7 5135 chr2L 4918149 intron hoe1 - chr2L 4920716 intron hoe1 - chr2L 4923284 intron hoe1 - chr2L_12_4920001 chr2L_4920001 RAL-359 124 chr2L 5224370 5224405 chr2L 5224459 5224477 4 90 3.0 5.5 4.2 0.8 107 chr2L 5224370 intron tkv - chr2L 5224424 intron tkv - chr2L 5224477 intron tkv - chr2L_4_5220001 chr2L_5220001 RAL-359 125 chr2L 5475132 5475158 chr2L 5475257 5475283 7 125 1.0 2.5 1.8 2.5 151 chr2L 5475132 intergenic not near genes chr2L 5475208 intergenic not near genes chr2L 5475283 intergenic not near genes chr2L_7_5475001 chr2L_5475001 RAL-359 126 chr2L 5516640 5516682 chr2L 5516739 5516781 12 99 4.5 3.5 4.0 2.4 141 chr2L 5516640 intergenic not near genes chr2L 5516710 intergenic not near genes chr2L 5516781 intergenic not near genes chr2L_12_5515001 chr2L_5515001 RAL-359 127 chr2L 5619295 5619315 chr2L 5619378 5619419 4 98 2.5 2.5 2.5 1.1 124 chr2L 5619295 intergenic CR44796 - chr2L 5619357 intergenic CR44796 - chr2L 5619419 intergenic CR44796 - chr2L_4_5615001 chr2L_5615001 RAL-359 128 chr2L 5668583 5668609 chr2L 5668681 5668707 11 97 6.0 6.0 6.0 1.6 124 chr2L 5668583 intron Hsp60C + chr2L 5668645 intron Hsp60C + chr2L 5668707 intron Hsp60C + chr2L_11_5665001 chr2L_5665001 RAL-359 129 chr2L 5771680 5771708 chr2L 5771789 5771817 7 109 3.5 4.0 3.8 1.5 137 chr2L 5771680 intron CG9171 - chr2L 5771748 intron CG9171 - chr2L 5771817 intron CG9171 - chr2L_7_5770001 chr2L_5770001 RAL-359 130 chr2L 5817434 5817468 chr2L 5817543 5817590 15 114 3.5 6.5 5.0 2.5 156 chr2L 5817434 intergenic CG31644 - chr2L 5817512 intergenic CG31644 - chr2L 5817590 intergenic CG31644 - chr2L_15_5815001 chr2L_5815001 RAL-359 131 chr2L 5827700 5827739 chr2L 5836728 5836767 roo 6 9027 3.5 6.0 4.8 1.0 9067 chr2L 5827700 intron TrissinR + chr2L 5832234 intron TrissinR + chr2L 5836767 intron TrissinR + chr2L_6_5830001 chr2L_5830001 RAL-359 132 chr2L 5853703 5853714 chr2L 5853808 5853818 4 103 3.5 7.5 5.5 0.6 115 chr2L 5853703 intron TrissinR + chr2L 5853760 intron TrissinR + chr2L 5853818 intron TrissinR + chr2L_4_5850001 chr2L_5850001 RAL-359 133 chr2L 5857365 5857413 chr2L 5857479 5857527 10 113 3.0 1.0 2.0 3.3 162 chr2L 5857365 intergenic not near genes chr2L 5857446 intergenic not near genes chr2L 5857527 intergenic not near genes chr2L_10_5855001 chr2L_5855001 RAL-359 134 chr2L 5887582 5887632 chr2L 5887683 5887732 9 101 3.0 6.0 4.5 1.6 150 chr2L 5887582 3` UTR CR44577 - chr2L 5887657 3` UTR CR44577 - chr2L 5887732 3` UTR CR44577 - chr2L_9_5885001 chr2L_5885001 RAL-359 135 chr2L 5989035 5989054 chr2L 5989126 5989129 4 90 7.5 0.0 3.8 0.8 94 chr2L 5989035 intergenic ifc +,lid - chr2L 5989082 intergenic ifc +,lid - chr2L 5989129 intergenic lid -,ifc + chr2L_4_5985001 chr2L_5985001 RAL-359 136 chr2L 5993313 5993361 chr2L 5993424 5993471 13 110 1.5 4.0 2.8 3.4 158 chr2L 5993313 exon lid - chr2L 5993392 intron lid - chr2L 5993471 exon lid - chr2L_13_5990001 chr2L_5990001 RAL-359 137 chr2L 6070895 6070926 chr2L 6071001 6071033 4 105 0.0 6.0 3.0 1.0 138 chr2L 6070895 intergenic Kr-h2 +,CG9154 - chr2L 6070964 intergenic Kr-h2 +,CG9154 - chr2L 6071033 5` UTR Kr-h2 + chr2L_4_6070001 chr2L_6070001 RAL-359 138 chr2L 6096551 6096576 chr2L 6096669 6096694 9 117 2.0 5.0 3.5 2.0 143 chr2L 6096551 intergenic Kr-h1 +,CG45075 +,CG9175 - chr2L 6096622 intergenic CG9175 -,Kr-h1 +,CG45075 + chr2L 6096694 intergenic CG9175 -,Kr-h1 +,CG45075 + chr2L_9_6095001 chr2L_6095001 RAL-359 139 chr2L 6222183 6222235 chr2L 6222312 6222362 9 129 5.0 2.5 3.8 1.9 179 chr2L 6222183 intergenic not near genes chr2L 6222272 intergenic not near genes chr2L 6222362 intergenic not near genes chr2L_9_6220001 chr2L_6220001 RAL-359 140 chr2L 6283933 6283978 chr2L 6284064 6284109 4 131 0.5 3.5 2.0 1.3 176 chr2L 6283933 intron Ddr + chr2L 6284021 intron Ddr + chr2L 6284109 intron Ddr + chr2L_4_6280001 chr2L_6280001 RAL-359 141 chr2L 6294642 6294698 chr2L 6294747 6294799 13 102 4.0 1.0 2.5 3.7 157 chr2L 6294642 intron Ddr + chr2L 6294720 intron Ddr + chr2L 6294799 intron Ddr + chr2L_13_6290001 chr2L_6290001 RAL-359 142 chr2L 6363134 6363181 chr2L 6366074 6366088 Burdock 6 2934 5.5 3.5 4.5 1.1 2954 chr2L 6363134 intergenic not near genes chr2L 6364611 intergenic not near genes chr2L 6366088 intergenic not near genes chr2L_6_6360001 chr2L_6360001 RAL-359 143 chr2L 6371659 6371705 chr2L 6371757 6371802 8 96 2.0 0.5 1.2 3.6 143 chr2L 6371659 intergenic not near genes chr2L 6371730 intergenic not near genes chr2L 6371802 intergenic not near genes chr2L_8_6370001 chr2L_6370001 RAL-359 144 chr2L 6387984 6388013 chr2L 6388083 6388112 9 99 2.5 2.0 2.2 2.8 128 chr2L 6387984 intron CG42368 - chr2L 6388048 intron CG42368 - chr2L 6388112 intron CG42368 - chr2L_9_6385001 chr2L_6385001 RAL-359 145 chr2L 6388949 6388986 chr2L 6389053 6389090 12 104 6.5 3.0 4.8 2.1 141 chr2L 6388949 intron CG42368 - chr2L 6389020 intron CG42368 - chr2L 6389090 intron CG42368 - chr2L_12_6385001 chr2L_6385001 RAL-359 146 chr2L 6398681 6398728 chr2L 6398782 6398824 7 100 3.5 5.5 4.5 1.3 143 chr2L 6398681 intron CG42368 - chr2L 6398752 intron CG42368 - chr2L 6398824 intron CG42368 - chr2L_7_6395001 chr2L_6395001 RAL-359 147 chr2L 6426836 6426871 chr2L 6445116 6445147 roo 10 18279 8.0 4.0 6.0 1.4 18311 chr2L 6426836 3` UTR CG9527 - chr2L 6435992 intron CG9527 - chr2L 6445147 exon CG9527 - chr2L_10_6435001 chr2L_6435001 RAL-359 148 chr2L 6589938 6589980 chr2L 6590027 6590068 4 95 0.0 0.5 0.2 3.3 130 chr2L 6589938 intron CG11319 - chr2L 6590003 intron CG11319 - chr2L 6590068 intron CG11319 - chr2L_4_6590001 chr2L_6590001 RAL-359 149 chr2L 6617047 6617100 chr2L 6617147 6617200 18 100 3.0 4.0 3.5 4.0 153 chr2L 6617047 3` UTR CG11050 + chr2L 6617124 intergenic CG11050 +,CG11320 - chr2L 6617200 exon CG11320 - chr2L_18_6615001 chr2L_6615001 RAL-359 150 chr2L 6655517 6655544 chr2L 6655888 6655888 7 370 2.5 3.5 3.0 1.8 371 chr2L 6655517 exon CG31633 - chr2L 6655702 exon CG31633 - chr2L 6655888 exon CG31633 - chr2L_7_6655001 chr2L_6655001 RAL-359 151 chr2L 6701066 6701108 chr2L 6701267 6701273 4 192 8.0 7.5 7.8 0.5 207 chr2L 6701066 intron Tsp - chr2L 6701170 intron Tsp - chr2L 6701273 intron Tsp - chr2L_4_6700001 chr2L_6700001 RAL-359 152 chr2L 6746076 6746116 chr2L 6746172 6746212 11 94 3.5 2.5 3.0 2.8 136 chr2L 6746076 intron CG11221 + chr2L 6746144 intron CG11221 + chr2L 6746212 intron CG11221 + chr2L_11_6745001 chr2L_6745001 RAL-359 153 chr2L 6836493 6836531 chr2L 6836583 6836633 7 99 3.5 4.0 3.8 1.5 140 chr2L 6836493 intron sens-2 + chr2L 6836563 intron sens-2 + chr2L 6836633 intron sens-2 + chr2L_7_6835001 chr2L_6835001 RAL-359 154 chr2L 6850374 6850427 chr2L 6850500 6850553 8 125 3.5 2.5 3.0 2.0 179 chr2L 6850374 intergenic not near genes chr2L 6850464 intergenic not near genes chr2L 6850553 intergenic not near genes chr2L_8_6850001 chr2L_6850001 RAL-359 155 chr2L 6867748 6867767 chr2L 6867858 6867877 4 110 9.0 5.5 7.2 0.5 129 chr2L 6867748 intron Nha1 - chr2L 6867812 intron Nha1 - chr2L 6867877 intron Nha1 - chr2L_4_6865001 chr2L_6865001 RAL-359 156 chr2L 6876780 6876808 chr2L 6882966 6883019 diver 5 6195 4.0 3.5 3.8 1.0 6239 chr2L 6876780 intron Nlg2 + chr2L 6879900 intron Nlg2 + chr2L 6883019 intron Nlg2 + chr2L_5_6875001 chr2L_6875001 RAL-359 157 chr2L 7005859 7005907 chr2L 7005964 7006012 11 103 0.5 6.5 3.5 2.4 153 chr2L 7005859 intron uif - chr2L 7005936 intron uif - chr2L 7006012 intron uif - chr2L_11_7005001 chr2L_7005001 RAL-359 158 chr2L 7078219 7078261 chr2L 7078336 7078378 6 117 3.5 3.5 3.5 1.3 159 chr2L 7078219 intron Pvf2 - chr2L 7078298 intron Pvf2 - chr2L 7078378 intron Pvf2 - chr2L_6_7075001 chr2L_7075001 RAL-359 159 chr2L 7089782 7089816 chr2L 7089889 7089906 5 100 3.0 1.0 2.0 1.7 124 chr2L 7089782 intergenic not near genes chr2L 7089844 intergenic not near genes chr2L 7089906 intergenic not near genes chr2L_5_7085001 chr2L_7085001 RAL-359 160 chr2L 7122843 7122880 chr2L 7122942 7122980 4 100 0.0 3.0 1.5 1.6 137 chr2L 7122843 intron Pvf3 - chr2L 7122912 intron Pvf3 - chr2L 7122980 intron Pvf3 - chr2L_4_7120001 chr2L_7120001 RAL-359 161 chr2L 7125770 7125810 chr2L 7125906 7125946 11 136 3.0 3.0 3.0 2.8 176 chr2L 7125770 intron Pvf3 - chr2L 7125858 intron Pvf3 - chr2L 7125946 intron Pvf3 - chr2L_11_7125001 chr2L_7125001 RAL-359 162 chr2L 7149980 7150004 chr2L 7150100 7150124 7 120 4.0 1.5 2.8 1.8 144 chr2L 7149980 intron Pvf3 - chr2L 7150052 intron Pvf3 - chr2L 7150124 intron Pvf3 - chr2L_7_7150001 chr2L_7150001 RAL-359 163 chr2L 7152478 7152507 chr2L 7152587 7152605 4 100 2.0 1.5 1.8 1.4 127 chr2L 7152478 intron Pvf3 - chr2L 7152542 intron Pvf3 - chr2L 7152605 intron Pvf3 - chr2L_4_7150001 chr2L_7150001 RAL-359 164 chr2L 7165762 7165793 chr2L 7165863 7165894 4 101 4.5 0.0 2.2 1.2 132 chr2L 7165762 intergenic not near genes chr2L 7165828 intergenic not near genes chr2L 7165894 intergenic not near genes chr2L_4_7165001 chr2L_7165001 RAL-359 165 chr2L 7228421 7228465 chr2L 7228523 7228567 8 102 4.5 2.0 3.2 1.9 146 chr2L 7228421 intron,exon Ndae1 -,CG43799 + chr2L 7228494 intron,exon Ndae1 -,CG43799 + chr2L 7228567 intron,3` UTR Ndae1 -,CG43799 + chr2L_8_7225001 chr2L_7225001 RAL-359 166 chr2L 7236475 7236516 chr2L 7236598 7236638 17 123 6.0 5.0 5.5 2.6 163 chr2L 7236475 intron Ndae1 - chr2L 7236556 intron Ndae1 - chr2L 7236638 intron Ndae1 - chr2L_17_7235001 chr2L_7235001 RAL-359 167 chr2L 7335184 7335211 chr2L 7335301 7335328 8 117 5.5 3.0 4.2 1.5 144 chr2L 7335184 intron Wnt6 + chr2L 7335256 intron Wnt6 + chr2L 7335328 intron Wnt6 + chr2L_8_7335001 chr2L_7335001 RAL-359 168 chr2L 7343305 7343359 chr2L 7350441 7350485 roo 5 7133 0.5 1.5 1.0 2.5 7180 chr2L 7343305 intron Wnt6 + chr2L 7346895 intron Wnt6 + chr2L 7350485 intron Wnt6 + chr2L_5_7345001 chr2L_7345001 RAL-359 169 chr2L 7377866 7377900 chr2L 7377983 7378017 5 117 0.0 6.0 3.0 1.2 151 chr2L 7377866 intron ninaC + chr2L 7377942 intron ninaC + chr2L 7378017 intron ninaC + chr2L_5_7375001 chr2L_7375001 RAL-359 170 chr2L 7436187 7436219 chr2L 7436301 7436333 9 114 2.0 0.0 1.0 4.5 146 chr2L 7436187 intergenic not near genes chr2L 7436260 intergenic not near genes chr2L 7436333 intergenic not near genes chr2L_9_7435001 chr2L_7435001 RAL-359 171 chr2L 7489589 7489603 chr2L 7489715 7489729 7 126 4.5 0.0 2.2 2.2 140 chr2L 7489589 intron Ziz - chr2L 7489659 intron Ziz - chr2L 7489729 intron Ziz - chr2L_7_7485001 chr2L_7485001 RAL-359 172 chr2L 7493415 7493417 chr2L 7493521 7493523 5 106 0.0 6.0 3.0 1.2 108 chr2L 7493415 intron Ziz - chr2L 7493469 intron Ziz - chr2L 7493523 intron Ziz - chr2L_5_7490001 chr2L_7490001 RAL-359 173 chr2L 7513756 7513768 chr2L 7513850 7513865 5 96 5.0 7.5 6.2 0.7 109 chr2L 7513756 intron RapGAP1 - chr2L 7513810 intron RapGAP1 - chr2L 7513865 intron RapGAP1 - chr2L_5_7510001 chr2L_7510001 RAL-359 174 chr2L 7513771 7513798 chr2L 7513849 7513895 9 95 2.0 7.5 4.8 1.6 124 chr2L 7513771 intron RapGAP1 - chr2L 7513833 intron RapGAP1 - chr2L 7513895 intron RapGAP1 - chr2L_9_7510001 chr2L_7510001 RAL-359 175 chr2L 7548099 7548106 chr2L 7550556 7550568 Burdock 4 2461 4.5 6.0 5.2 0.6 2469 chr2L 7548099 intron RapGAP1 - chr2L 7549334 intron RapGAP1 - chr2L 7550568 intron RapGAP1 - chr2L_4_7545001 chr2L_7545001 RAL-359 176 chr2L 7579171 7579211 chr2L 7579382 7579422 BS 6 210 5.0 0.0 2.5 1.7 251 chr2L 7579171 intergenic RapGAP1 - chr2L 7579296 intergenic RapGAP1 - chr2L 7579422 intergenic RapGAP1 - chr2L_6_7575001 chr2L_7575001 RAL-359 177 chr2L 7579877 7579917 chr2L 7579979 7580019 8 101 0.5 4.0 2.2 2.5 142 chr2L 7579877 intergenic not near genes chr2L 7579948 intergenic not near genes chr2L 7580019 intergenic not near genes chr2L_8_7575001 chr2L_7575001 RAL-359 178 chr2L 7621812 7621823 chr2L 7621924 7621935 4 112 1.5 7.0 4.2 0.8 123 chr2L 7621812 intergenic not near genes chr2L 7621874 intergenic not near genes chr2L 7621935 intergenic not near genes chr2L_4_7620001 chr2L_7620001 RAL-359 179 chr2L 7685482 7685524 chr2L 7685576 7685622 12 94 2.5 3.0 2.8 3.2 140 chr2L 7685482 intron Myo28B1 + chr2L 7685552 intron Myo28B1 + chr2L 7685622 intron Myo28B1 + chr2L_12_7685001 chr2L_7685001 RAL-359 180 chr2L 7702892 7702913 chr2L 7703073 7703097 9 184 3.0 7.5 5.2 1.5 205 chr2L 7702892 5` UTR Tep3 + chr2L 7702994 5` UTR Tep3 + chr2L 7703097 5` UTR Tep3 + chr2L_9_7700001 chr2L_7700001 RAL-359 181 chr2L 7788849 7788856 chr2L 7788929 7788953 4 93 0.5 1.5 1.0 2.0 104 chr2L 7788849 intron CG7149 - chr2L 7788901 intron CG7149 - chr2L 7788953 intron CG7149 - chr2L_4_7785001 chr2L_7785001 RAL-359 182 chr2L 7854243 7854281 chr2L 7854340 7854378 10 95 0.5 4.0 2.2 3.1 135 chr2L 7854243 intron CG14535 - chr2L 7854310 intron CG14535 - chr2L 7854378 intron CG14535 - chr2L_10_7850001 chr2L_7850001 RAL-359 183 chr2L 7922721 7922767 chr2L 7922822 7922868 10 100 6.5 5.5 6.0 1.4 147 chr2L 7922721 intron Snoo - chr2L 7922794 intron Snoo - chr2L 7922868 intron Snoo - chr2L_10_7920001 chr2L_7920001 RAL-359 184 chr2L 7954005 7954024 chr2L 7954098 7954126 4 98 3.5 4.0 3.8 0.8 121 chr2L 7954005 intron Snoo - chr2L 7954066 intron Snoo - chr2L 7954126 intron Snoo - chr2L_4_7950001 chr2L_7950001 RAL-359 185 chr2L 7959025 7959072 chr2L 7960456 7960505 pogo 11 1430 3.5 0.5 2.0 3.7 1480 chr2L 7959025 intron Snoo - chr2L 7959765 intron Snoo - chr2L 7960505 intron Snoo - chr2L_11_7955001 chr2L_7955001 RAL-359 186 chr2L 7985287 7985328 chr2L 7985404 7985445 15 115 6.0 7.5 6.8 1.9 158 chr2L 7985287 intron CG7231 + chr2L 7985366 intron CG7231 + chr2L 7985445 intron CG7231 + chr2L_15_7985001 chr2L_7985001 RAL-359 187 chr2L 7997012 7997059 chr2L 7997132 7997179 16 120 3.5 1.5 2.5 4.6 167 chr2L 7997012 intron CG7227 - chr2L 7997096 intron CG7227 - chr2L 7997179 intron CG7227 - chr2L_16_7995001 chr2L_7995001 RAL-359 188 chr2L 7999743 7999770 chr2L 7999840 7999867 11 97 2.0 2.5 2.2 3.4 124 chr2L 7999743 intron Wwox - chr2L 7999805 3` UTR Wwox - chr2L 7999867 exon Wwox - chr2L_11_7995001 chr2L_7995001 RAL-359 189 chr2L 8089664 8089710 chr2L 8105692 8105738 5 16028 14.5 18.5 16.5 0.3 16074 chr2L 8089664 exon Bsg + chr2L 8097701 intron Bsg + chr2L 8105738 exon Bsg + chr2L_5_8095001 chr2L_8095001 RAL-359 190 chr2L 8167130 8167174 chr2L 8167235 8167275 8 109 3.5 1.5 2.5 2.3 145 chr2L 8167130 intron Piezo + chr2L 8167202 intron Piezo + chr2L 8167275 intron Piezo + chr2L_8_8165001 chr2L_8165001 RAL-359 191 chr2L 8171277 8171301 chr2L 8171378 8171402 8 101 0.0 9.5 4.8 1.4 125 chr2L 8171277 intron Piezo + chr2L 8171340 intron Piezo + chr2L 8171402 intron Piezo + chr2L_8_8170001 chr2L_8170001 RAL-359 192 chr2L 8238397 8238441 chr2L 8238495 8238539 4 98 3.5 0.0 1.8 1.4 142 chr2L 8238397 intron Pvr - chr2L 8238468 intron Pvr - chr2L 8238539 intron Pvr - chr2L_4_8235001 chr2L_8235001 RAL-359 193 chr2L 8269981 8270028 chr2L 8270083 8270130 15 102 2.5 8.0 5.2 2.4 149 chr2L 8269981 intron Btk29A - chr2L 8270056 intron Btk29A - chr2L 8270130 intron Btk29A - chr2L_15_8270001 chr2L_8270001 RAL-359 194 chr2L 8271635 8271747 chr2L 8271731 8271868 4 108 2.5 2.5 2.5 1.1 233 chr2L 8271635 intron Btk29A - chr2L 8271752 intron Btk29A - chr2L 8271868 intron Btk29A - chr2L_4_8270001 chr2L_8270001 RAL-359 195 chr2L 8285003 8285036 chr2L 8285100 8285132 7 96 4.5 4.5 4.5 1.3 129 chr2L 8285003 intron Btk29A - chr2L 8285068 intron Btk29A - chr2L 8285132 intron Btk29A - chr2L_7_8285001 chr2L_8285001 RAL-359 196 chr2L 8452402 8452415 chr2L 8461593 8461606 roo 4 9191 10.5 4.0 7.2 0.5 9204 chr2L 8452402 intron fu12 - chr2L 8457004 intron fu12 - chr2L 8461606 intron fu12 - chr2L_4_8455001 chr2L_8455001 RAL-359 197 chr2L 8452416 8452444 chr2L 8461589 8461635 roo 8 9188 6.0 4.0 5.0 1.3 9219 chr2L 8452416 intron fu12 - chr2L 8457026 intron fu12 - chr2L 8461635 intron fu12 - chr2L_8_8455001 chr2L_8455001 RAL-359 198 chr2L 8498184 8498236 chr2L 8498285 8498337 7 101 0.5 1.0 0.8 3.9 153 chr2L 8498184 intron Dh31 - chr2L 8498260 intron Dh31 - chr2L 8498337 intron Dh31 - chr2L_7_8495001 chr2L_8495001 RAL-359 199 chr2L 8525641 8525690 chr2L 8525769 8525811 7 123 2.5 3.0 2.8 1.8 170 chr2L 8525641 3` UTR,3` UTR,3` UTR Acer +,lmgA -,lmgB - chr2L 8525726 3` UTR,3` UTR,3` UTR Acer +,lmgA -,lmgB - chr2L 8525811 3` UTR,3` UTR lmgA -,lmgB - chr2L_7_8525001 chr2L_8525001 RAL-359 200 chr2L 8538143 8538154 chr2L 8538239 8538250 6 95 10.5 0.0 5.2 1.0 107 chr2L 8538143 intron CG17834 + chr2L 8538196 intron CG17834 + chr2L 8538250 intron CG17834 + chr2L_6_8535001 chr2L_8535001 RAL-359 201 chr2L 8586279 8586301 chr2L 8586369 8586391 4 93 2.5 4.0 3.2 1.0 112 chr2L 8586279 intron Sema-1a + chr2L 8586335 intron Sema-1a + chr2L 8586391 intron Sema-1a + chr2L_4_8585001 chr2L_8585001 RAL-359 202 chr2L 8612838 8612864 chr2L 8612931 8612961 7 96 7.0 4.5 5.8 1.0 123 chr2L 8612838 intron Sema-1a + chr2L 8612900 intron Sema-1a + chr2L 8612961 intron Sema-1a + chr2L_7_8610001 chr2L_8610001 RAL-359 203 chr2L 8629249 8629294 chr2L 8629347 8629392 12 97 2.0 3.5 2.8 3.2 143 chr2L 8629249 intron Sema-1a + chr2L 8629320 intron Sema-1a + chr2L 8629392 intron Sema-1a + chr2L_12_8625001 chr2L_8625001 RAL-359 204 chr2L 8695801 8695850 chr2L 8695974 8696023 14 172 2.0 4.5 3.2 3.3 222 chr2L 8695801 intron Hnf4 - chr2L 8695912 intron Hnf4 - chr2L 8696023 intron Hnf4 - chr2L_14_8695001 chr2L_8695001 RAL-359 205 chr2L 8723095 8723135 chr2L 8731492 8731532 Tirant 7 8397 3.0 6.5 4.8 1.2 8437 chr2L 8723095 intron raw - chr2L 8727314 intron raw - chr2L 8731532 intron raw - chr2L_7_8725001 chr2L_8725001 RAL-359 206 chr2L 8799782 8799830 chr2L 8799918 8799961 10 130 5.0 2.0 3.5 2.2 179 chr2L 8799782 intergenic not near genes chr2L 8799872 intergenic not near genes chr2L 8799961 intergenic not near genes chr2L_10_8795001 chr2L_8795001 RAL-359 207 chr2L 8815460 8815472 chr2L 8815533 8815575 8 90 2.5 3.5 3.0 2.0 115 chr2L 8815460 intergenic not near genes chr2L 8815518 intergenic not near genes chr2L 8815575 intergenic not near genes chr2L_8_8815001 chr2L_8815001 RAL-359 208 chr2L 8939647 8939679 chr2L 8939747 8939779 10 100 5.0 3.5 4.2 1.9 132 chr2L 8939647 3` UTR Tsp29Fb + chr2L 8939713 3` UTR Tsp29Fb + chr2L 8939779 intergenic CG9510 -,Tsp29Fb + chr2L_10_8935001 chr2L_8935001 RAL-359 209 chr2L 8956204 8956225 chr2L 8956301 8956322 4 97 0.5 2.0 1.2 1.8 118 chr2L 8956204 intron CG31886 - chr2L 8956263 intron CG31886 - chr2L 8956322 intron CG31886 - chr2L_4_8955001 chr2L_8955001 RAL-359 210 chr2L 8980438 8980452 chr2L 8980547 8980561 4 109 7.5 0.0 3.8 0.8 123 chr2L 8980438 intron CG13101 - chr2L 8980500 intron CG13101 - chr2L 8980561 intron CG13101 - chr2L_4_8980001 chr2L_8980001 RAL-359 211 chr2L 9000268 9000313 chr2L 9007797 9007843 roo 15 7530 8.0 0.0 4.0 3.0 7575 chr2L 9000268 intergenic Try29F + chr2L 9004056 intergenic not near genes chr2L 9007843 intergenic not near genes chr2L_15_9000001 chr2L_9000001 RAL-359 212 chr2L 9025805 9025853 chr2L 9025909 9025921 16 98 2.0 5.0 3.5 3.6 116 chr2L 9025805 intron,3` UTR CG9582 -,CR44352 - chr2L 9025863 intron,3` UTR CG9582 -,CR44352 - chr2L 9025921 intron,3` UTR CG9582 -,CR44352 - chr2L_16_9025001 chr2L_9025001 RAL-359 213 chr2L 9068158 9068209 chr2L 9068255 9068306 14 95 2.5 3.0 2.8 3.7 148 chr2L 9068158 intron CG31708 - chr2L 9068232 intron CG31708 - chr2L 9068306 intron CG31708 - chr2L_14_9065001 chr2L_9065001 RAL-359 214 chr2L 9073271 9073282 chr2L 9073361 9073383 6 100 1.0 4.5 2.8 1.6 112 chr2L 9073271 intergenic not near genes chr2L 9073327 intergenic not near genes chr2L 9073383 intergenic not near genes chr2L_6_9070001 chr2L_9070001 RAL-359 215 chr2L 9073284 9073295 chr2L 9073355 9073401 6 96 0.5 3.5 2.0 2.0 117 chr2L 9073284 intergenic not near genes chr2L 9073342 intergenic not near genes chr2L 9073401 intergenic not near genes chr2L_6_9070001 chr2L_9070001 RAL-359 216 chr2L 9084336 9084340 chr2L 16217660 16217660 7 7133322 12.5 22.0 17.2 0.4 7133324 chr2L 9084336 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_7_12650001 chr2L_12650001 RAL-359 217 chr2L 9095560 9095604 chr2L 9095667 9095676 17 104 3.5 2.0 2.8 4.5 116 chr2L 9095560 intergenic not near genes chr2L 9095618 intergenic not near genes chr2L 9095676 intergenic not near genes chr2L_17_9095001 chr2L_9095001 RAL-359 218 chr2L 9114076 9114124 chr2L 9114175 9114223 10 93 3.0 2.5 2.8 2.6 147 chr2L 9114076 intergenic not near genes chr2L 9114150 intergenic not near genes chr2L 9114223 intergenic not near genes chr2L_10_9110001 chr2L_9110001 RAL-359 219 chr2L 9158766 9158788 chr2L 9158883 9158905 6 117 7.5 0.0 3.8 1.2 139 chr2L 9158766 intron CG32982 + chr2L 9158836 intron CG32982 + chr2L 9158905 intron CG32982 + chr2L_6_9155001 chr2L_9155001 RAL-359 220 chr2L 9251125 9251165 chr2L 9251242 9251275 13 114 6.0 5.0 5.5 2.0 150 chr2L 9251125 intergenic aust -,borr - chr2L 9251200 intergenic aust -,borr - chr2L 9251275 intergenic borr -,aust - chr2L_13_9250001 chr2L_9250001 RAL-359 221 chr2L 9279981 9280016 chr2L 9280095 9280130 5 114 0.0 4.0 2.0 1.7 149 chr2L 9279981 intron Ggamma30A + chr2L 9280056 intron Ggamma30A + chr2L 9280130 intron Ggamma30A + chr2L_5_9280001 chr2L_9280001 RAL-359 222 chr2L 9297358 9297400 chr2L 9297455 9297497 15 97 2.5 3.5 3.0 3.8 139 chr2L 9297358 3` UTR Ggamma30A + chr2L 9297428 3` UTR Ggamma30A + chr2L 9297497 3` UTR Ggamma30A + chr2L_15_9295001 chr2L_9295001 RAL-359 223 chr2L 9352843 9352888 chr2L 9352940 9352990 15 98 2.0 3.0 2.5 4.3 147 chr2L 9352843 intergenic not near genes chr2L 9352916 intergenic not near genes chr2L 9352990 intergenic not near genes chr2L_15_9350001 chr2L_9350001 RAL-359 224 chr2L 9379458 9379485 chr2L 9379559 9379586 9 101 8.5 8.5 8.5 0.9 128 chr2L 9379458 intron Shawl - chr2L 9379522 intron Shawl - chr2L 9379586 intron Shawl - chr2L_9_9375001 chr2L_9375001 RAL-359 225 chr2L 9380225 9380254 chr2L 9380340 9380369 11 114 6.5 1.5 4.0 2.2 144 chr2L 9380225 exon Shawl - chr2L 9380297 intron Shawl - chr2L 9380369 intron Shawl - chr2L_11_9380001 chr2L_9380001 RAL-359 226 chr2L 9387229 9387277 chr2L 9387347 9387389 11 117 1.5 1.5 1.5 4.4 160 chr2L 9387229 intron Shawl - chr2L 9387309 intron Shawl - chr2L 9387389 intron,5` UTR Shawl -,Aldh + chr2L_11_9385001 chr2L_9385001 RAL-359 227 chr2L 9393498 9393521 chr2L 9396485 9396508 jockey 8 2987 3.0 6.5 4.8 1.4 3010 chr2L 9393498 intron Shawl - chr2L 9395003 intron Shawl - chr2L 9396508 intron Shawl - chr2L_8_9395001 chr2L_9395001 RAL-359 228 chr2L 9463750 9463770 chr2L 9463855 9463875 6 105 5.5 3.5 4.5 1.1 125 chr2L 9463750 intergenic not near genes chr2L 9463812 intergenic not near genes chr2L 9463875 intergenic not near genes chr2L_6_9460001 chr2L_9460001 RAL-359 229 chr2L 9526828 9526874 chr2L 9526940 9526986 14 112 3.5 3.0 3.2 3.3 158 chr2L 9526828 intron Oatp30B + chr2L 9526907 intron Oatp30B + chr2L 9526986 intron Oatp30B + chr2L_14_9525001 chr2L_9525001 RAL-359 230 chr2L 9610109 9610142 chr2L 9610192 9610220 9 84 3.5 3.0 3.2 2.1 111 chr2L 9610109 intron gcm2 + chr2L 9610164 intron gcm2 + chr2L 9610220 intron gcm2 + chr2L_9_9610001 chr2L_9610001 RAL-359 231 chr2L 9618873 9618909 chr2L 9618970 9619006 7 97 3.5 1.5 2.5 2.0 133 chr2L 9618873 intron GlcAT-S + chr2L 9618940 intron GlcAT-S + chr2L 9619006 intron GlcAT-S + chr2L_7_9615001 chr2L_9615001 RAL-359 232 chr2L 9633812 9633855 chr2L 9633959 9634002 7 147 2.5 1.0 1.8 2.5 190 chr2L 9633812 intergenic Apoltp + chr2L 9633907 intergenic Apoltp + chr2L 9634002 intergenic Apoltp + chr2L_7_9630001 chr2L_9630001 RAL-359 233 chr2L 9663236 9663273 chr2L 9663348 9663379 8 111 2.0 0.0 1.0 4.0 143 chr2L 9663236 intergenic not near genes chr2L 9663308 intergenic not near genes chr2L 9663379 intergenic not near genes chr2L_8_9660001 chr2L_9660001 RAL-359 234 chr2L 9686338 9686374 chr2L 9686437 9686478 15 102 7.0 0.0 3.5 3.3 140 chr2L 9686338 intron Pka-C1 - chr2L 9686408 intron Pka-C1 - chr2L 9686478 intron Pka-C1 - chr2L_15_9685001 chr2L_9685001 RAL-359 235 chr2L 9706134 9706154 chr2L 9706247 9706249 4 108 4.0 1.5 2.8 1.1 115 chr2L 9706134 intron pelo + chr2L 9706192 intron pelo + chr2L 9706249 intron pelo + chr2L_4_9705001 chr2L_9705001 RAL-359 236 chr2L 9719759 9719777 chr2L 9719860 9719878 4 101 0.0 1.5 0.8 2.2 119 chr2L 9719759 intron Nckx30C - chr2L 9719818 intron Nckx30C - chr2L 9719878 intron Nckx30C - chr2L_4_9715001 chr2L_9715001 RAL-359 237 chr2L 9775967 9776009 chr2L 9776069 9776111 14 101 5.0 6.5 5.8 2.1 144 chr2L 9775967 intergenic not near genes chr2L 9776039 intergenic not near genes chr2L 9776111 intergenic not near genes chr2L_14_9775001 chr2L_9775001 RAL-359 238 chr2L 9847795 9847817 chr2L 9847984 9848006 8 189 4.0 0.0 2.0 2.7 211 chr2L 9847795 intron nAChRalpha6 - chr2L 9847900 intron nAChRalpha6 - chr2L 9848006 intron nAChRalpha6 - chr2L_8_9845001 chr2L_9845001 RAL-359 239 chr2L 9883143 9883167 chr2L 9883259 9883282 9 116 3.5 2.0 2.8 2.4 139 chr2L 9883143 intron nAChRalpha6 - chr2L 9883212 intron nAChRalpha6 - chr2L 9883282 intron nAChRalpha6 - chr2L_9_9880001 chr2L_9880001 RAL-359 240 chr2L 9892500 9892520 chr2L 9892596 9892616 4 96 5.0 6.0 5.5 0.6 116 chr2L 9892500 intron mtDNA-helicase - chr2L 9892558 intron mtDNA-helicase - chr2L 9892616 intron mtDNA-helicase - chr2L_4_9890001 chr2L_9890001 RAL-359 241 chr2L 9973714 9973748 chr2L 9980853 9980873 HMS-Beagle 4 7135 2.0 4.5 3.2 1.0 7159 chr2L 9973714 intergenic not near genes chr2L 9977294 intergenic not near genes chr2L 9980873 intergenic not near genes chr2L_4_9975001 chr2L_9975001 RAL-359 242 chr2L 9982198 9982229 chr2L 9982319 9982352 10 122 0.0 7.5 3.8 2.1 154 chr2L 9982198 intergenic not near genes chr2L 9982275 intergenic not near genes chr2L 9982352 intergenic not near genes chr2L_10_9980001 chr2L_9980001 RAL-359 243 chr2L 9990195 9990206 chr2L 9990317 9990329 5 123 5.0 0.0 2.5 1.4 134 chr2L 9990195 intron bib + chr2L 9990262 intron bib + chr2L 9990329 intron bib + chr2L_5_9990001 chr2L_9990001 RAL-359 244 chr2L 10087466 10087484 chr2L 10087552 10087581 6 95 7.0 4.0 5.5 0.9 115 chr2L 10087466 intron CG44153 - chr2L 10087524 intron CG44153 - chr2L 10087581 intron CG44153 - chr2L_6_10085001 chr2L_10085001 RAL-359 245 chr2L 10156306 10156337 chr2L 10163795 10163804 blood 4 7483 2.5 2.5 2.5 1.1 7498 chr2L 10156306 intron,3` UTR CG44153 -,CG4839 + chr2L 10160055 intron CG44153 - chr2L 10163804 intron CG44153 - chr2L_4_10160001 chr2L_10160001 RAL-359 246 chr2L 10168559 10168591 chr2L 10168664 10168696 7 105 1.5 2.0 1.8 2.5 137 chr2L 10168559 intron CG44153 - chr2L 10168628 intron CG44153 - chr2L 10168696 intron CG44153 - chr2L_7_10165001 chr2L_10165001 RAL-359 247 chr2L 10276179 10276226 chr2L 10276277 10276324 11 98 3.0 3.0 3.0 2.8 145 chr2L 10276179 intron Utx - chr2L 10276252 intron Utx - chr2L 10276324 intron Utx - chr2L_11_10275001 chr2L_10275001 RAL-359 248 chr2L 10294157 10294197 chr2L 10294253 10294293 9 96 2.0 1.5 1.8 3.2 136 chr2L 10294157 intron Hand - chr2L 10294225 intron Hand - chr2L 10294293 intron Hand - chr2L_9_10290001 chr2L_10290001 RAL-359 249 chr2L 10344867 10344875 chr2L 10344978 10344986 5 111 3.0 2.5 2.8 1.3 119 chr2L 10344867 intron CG5022 + chr2L 10344926 intron CG5022 + chr2L 10344986 intron CG5022 + chr2L_5_10340001 chr2L_10340001 RAL-359 250 chr2L 10428232 10428274 chr2L 10428333 10428375 6 101 1.5 3.5 2.5 1.7 143 chr2L 10428232 3` UTR KdelR + chr2L 10428304 3` UTR KdelR + chr2L 10428375 3` UTR KdelR + chr2L_6_10425001 chr2L_10425001 RAL-359 251 chr2L 10458088 10458100 chr2L 10458369 10458381 5 281 2.5 0.5 1.5 2.0 293 chr2L 10458088 intron LM408 + chr2L 10458234 intron LM408 + chr2L 10458381 intron LM408 + chr2L_5_10455001 chr2L_10455001 RAL-359 252 chr2L 10495285 10495298 chr2L 10495382 10495395 5 97 9.5 0.5 5.0 0.8 110 chr2L 10495285 intron Myo31DF - chr2L 10495340 intron Myo31DF - chr2L 10495395 intron Myo31DF - chr2L_5_10495001 chr2L_10495001 RAL-359 253 chr2L 10524719 10524867 chr2L 10524843 10524995 5 126 0.0 0.0 0.0 5.0 276 chr2L 10524719 intergenic not near genes chr2L 10524857 intergenic not near genes chr2L 10524995 intergenic not near genes chr2L_5_10520001 chr2L_10520001 RAL-359 254 chr2L 10531594 10531625 chr2L 10531706 10531737 11 112 0.0 4.0 2.0 3.7 143 chr2L 10531594 3` UTR Lip4 + chr2L 10531666 3` UTR Lip4 + chr2L 10531737 3` UTR Lip4 + chr2L_11_10530001 chr2L_10530001 RAL-359 255 chr2L 10540851 10540872 chr2L 10540949 10540970 5 98 4.5 2.5 3.5 1.1 119 chr2L 10540851 intergenic not near genes chr2L 10540910 intergenic not near genes chr2L 10540970 intergenic not near genes chr2L_5_10540001 chr2L_10540001 RAL-359 256 chr2L 10589054 10589079 chr2L 10589150 10589175 6 96 3.5 3.5 3.5 1.3 121 chr2L 10589054 intron Trim9 + chr2L 10589114 intron Trim9 + chr2L 10589175 intron Trim9 + chr2L_6_10585001 chr2L_10585001 RAL-359 257 chr2L 10592830 10592872 chr2L 10600512 10600554 opus 10 7682 0.5 5.0 2.8 2.6 7724 chr2L 10592830 intron Trim9 + chr2L 10596692 intron Trim9 + chr2L 10600554 intron Trim9 + chr2L_10_10595001 chr2L_10595001 RAL-359 258 chr2L 10603214 10603262 chr2L 10603337 10603349 5 114 3.5 3.0 3.2 1.2 135 chr2L 10603214 intron Trim9 + chr2L 10603282 intron Trim9 + chr2L 10603349 intron Trim9 + chr2L_5_10600001 chr2L_10600001 RAL-359 259 chr2L 10647578 10647581 chr2L 10647723 10647725 4 145 11.5 26.0 18.8 0.2 147 chr2L 10647578 exon CG17097 + chr2L 10647652 exon CG17097 + chr2L 10647725 exon CG17097 + chr2L_4_10645001 chr2L_10645001 RAL-359 260 chr2L 10653251 10653298 chr2L 10653366 10653412 13 116 1.5 3.0 2.2 4.1 161 chr2L 10653251 exon CG17098 + chr2L 10653332 intron CG17098 + chr2L 10653412 intron CG17098 + chr2L_13_10650001 chr2L_10650001 RAL-359 261 chr2L 10656581 10656610 chr2L 10656677 10656706 12 96 2.0 4.0 3.0 3.0 125 chr2L 10656581 intergenic not near genes chr2L 10656644 intergenic not near genes chr2L 10656706 intergenic not near genes chr2L_12_10655001 chr2L_10655001 RAL-359 262 chr2L 10668568 10668620 chr2L 10668670 10668711 9 100 3.0 3.0 3.0 2.2 143 chr2L 10668568 intron CG31871 + chr2L 10668640 intron CG31871 + chr2L 10668711 exon CG31871 + chr2L_9_10665001 chr2L_10665001 RAL-359 263 chr2L 10683429 10683478 chr2L 10683528 10683577 6 99 1.5 0.0 0.8 3.3 148 chr2L 10683429 3` UTR CG7299 - chr2L 10683503 3` UTR CG7299 - chr2L 10683577 3` UTR CG7299 - chr2L_6_10680001 chr2L_10680001 RAL-359 264 chr2L 10704897 10704947 chr2L 10705012 10705060 7 115 0.5 0.5 0.5 4.7 163 chr2L 10704897 intron,exon Lip2 -,CG6415 + chr2L 10704978 intron Lip2 - chr2L 10705060 exon Lip2 - chr2L_7_10700001 chr2L_10700001 RAL-359 265 chr2L 10793301 10793348 chr2L 10793398 10793443 5 97 3.0 2.5 2.8 1.3 142 chr2L 10793301 intron CG31869 - chr2L 10793372 intron CG31869 - chr2L 10793443 intron CG31869 - chr2L_5_10790001 chr2L_10790001 RAL-359 266 chr2L 10803757 10803805 chr2L 10803862 10803909 7 104 0.5 3.5 2.0 2.3 152 chr2L 10803757 intergenic not near genes chr2L 10803833 intergenic Nos - chr2L 10803909 intergenic Nos - chr2L_7_10800001 chr2L_10800001 RAL-359 267 chr2L 10836740 10836781 chr2L 10836839 10836879 6 98 6.0 3.5 4.8 1.0 139 chr2L 10836740 intron Nos - chr2L 10836810 intron Nos - chr2L 10836879 intron Nos - chr2L_6_10835001 chr2L_10835001 RAL-359 268 chr2L 10850950 10850991 chr2L 10851036 10851093 5 98 4.0 0.0 2.0 1.7 143 chr2L 10850950 intron CG43129 + chr2L 10851022 intron CG43129 + chr2L 10851093 intron CG43129 + chr2L_5_10850001 chr2L_10850001 RAL-359 269 chr2L 10852148 10852181 chr2L 10852257 10852290 9 109 4.0 4.0 4.0 1.8 142 chr2L 10852148 intron CG43129 + chr2L 10852219 intron CG43129 + chr2L 10852290 intron CG43129 + chr2L_9_10850001 chr2L_10850001 RAL-359 270 chr2L 10862845 10862863 chr2L 10864461 10864494 Rt1c 6 1622 2.0 3.5 2.8 1.6 1649 chr2L 10862845 3` UTR CR43807 - chr2L 10863670 intron CR43807 - chr2L 10864494 3` UTR CR43807 - chr2L_6_10860001 chr2L_10860001 RAL-359 271 chr2L 10946935 10946968 chr2L 10956170 10956203 roo 6 9234 6.0 4.5 5.2 1.0 9268 chr2L 10946935 intron dpr2 - chr2L 10951569 intron dpr2 - chr2L 10956203 intron dpr2 - chr2L_6_10950001 chr2L_10950001 RAL-359 272 chr2L 11169567 11169590 chr2L 11169669 11169692 10 102 0.0 10.5 5.2 1.6 125 chr2L 11169567 intron Ca-beta - chr2L 11169630 intron Ca-beta - chr2L 11169692 intron Ca-beta - chr2L_10_11165001 chr2L_11165001 RAL-359 273 chr2L 11253320 11253356 chr2L 11253421 11253457 11 101 1.5 2.5 2.0 3.7 137 chr2L 11253320 intron ab + chr2L 11253388 intron ab + chr2L 11253457 intron ab + chr2L_11_11250001 chr2L_11250001 RAL-359 274 chr2L 11308991 11309027 chr2L 11309119 11309155 8 128 1.5 0.0 0.8 4.4 164 chr2L 11308991 intergenic not near genes chr2L 11309073 intergenic not near genes chr2L 11309155 intergenic not near genes chr2L_8_11305001 chr2L_11305001 RAL-359 275 chr2L 11404768 11404805 chr2L 11404864 11404901 14 94 1.5 4.0 2.8 3.7 133 chr2L 11404768 intergenic not near genes chr2L 11404834 intergenic not near genes chr2L 11404901 intergenic not near genes chr2L_14_11400001 chr2L_11400001 RAL-359 276 chr2L 11413272 11413322 chr2L 11413415 11413466 7 142 2.5 3.0 2.8 1.8 194 chr2L 11413272 intergenic not near genes chr2L 11413369 intergenic not near genes chr2L 11413466 intergenic not near genes chr2L_7_11410001 chr2L_11410001 RAL-359 277 chr2L 11414949 11414990 chr2L 11415052 11415093 9 103 1.5 5.0 3.2 2.1 144 chr2L 11414949 intergenic not near genes chr2L 11415021 intergenic not near genes chr2L 11415093 intergenic not near genes chr2L_9_11415001 chr2L_11415001 RAL-359 278 chr2L 11418635 11418673 chr2L 11418733 11418772 7 97 6.0 2.5 4.2 1.3 137 chr2L 11418635 intergenic not near genes chr2L 11418704 intergenic not near genes chr2L 11418772 intergenic not near genes chr2L_7_11415001 chr2L_11415001 RAL-359 279 chr2L 11485672 11485700 chr2L 11485768 11485796 4 96 3.5 0.0 1.8 1.4 124 chr2L 11485672 exon,5` UTR CG43355 +,sala + chr2L 11485734 3` UTR,5` UTR CG43355 +,sala + chr2L 11485796 intron,intron CG43355 +,sala + chr2L_4_11485001 chr2L_11485001 RAL-359 280 chr2L 11540587 11540615 chr2L 11548009 11548037 Tabor 7 7422 1.0 4.0 2.5 2.0 7450 chr2L 11540587 intergenic not near genes chr2L 11544312 intergenic not near genes chr2L 11548037 intergenic not near genes chr2L_7_11540001 chr2L_11540001 RAL-359 281 chr2L 11563629 11563669 chr2L 11568849 11568883 copia 8 5221 1.5 2.5 2.0 2.7 5254 chr2L 11563629 intergenic not near genes chr2L 11566256 intergenic not near genes chr2L 11568883 intergenic not near genes chr2L_8_11565001 chr2L_11565001 RAL-359 282 chr2L 11633161 11633176 chr2L 11633283 11633283 4 116 5.5 5.5 5.5 0.6 122 chr2L 11633161 intergenic not near genes chr2L 11633222 intergenic not near genes chr2L 11633283 intergenic not near genes chr2L_4_11630001 chr2L_11630001 RAL-359 283 chr2L 11698558 11698591 chr2L 11698671 11698704 8 113 2.0 2.0 2.0 2.7 146 chr2L 11698558 intergenic not near genes chr2L 11698631 intergenic not near genes chr2L 11698704 intergenic not near genes chr2L_8_11695001 chr2L_11695001 RAL-359 284 chr2L 11713496 11713540 chr2L 11720979 11721028 blood 9 7487 3.0 2.5 2.8 2.4 7532 chr2L 11713496 intergenic not near genes chr2L 11717262 intergenic not near genes chr2L 11721028 intergenic CR44143 + chr2L_9_11715001 chr2L_11715001 RAL-359 285 chr2L 11752845 11752893 chr2L 11753155 11753203 12 307 4.5 2.5 3.5 2.7 358 chr2L 11752845 intergenic CG42470 - chr2L 11753024 3` UTR CG42470 - chr2L 11753203 exon CG42470 - chr2L_12_11750001 chr2L_11750001 RAL-359 286 chr2L 11870941 11870974 chr2L 11871039 11871072 10 98 0.0 3.5 1.8 3.6 131 chr2L 11870941 intron Pde1c - chr2L 11871006 intron Pde1c - chr2L 11871072 intron Pde1c - chr2L_10_11870001 chr2L_11870001 RAL-359 287 chr2L 11892526 11892551 chr2L 11892635 11892660 7 109 5.5 3.5 4.5 1.3 134 chr2L 11892526 intron Pde1c - chr2L 11892593 intron Pde1c - chr2L 11892660 intron Pde1c - chr2L_7_11890001 chr2L_11890001 RAL-359 288 chr2L 12046492 12046521 chr2L 12046627 12046665 12 143 2.0 2.5 2.2 3.8 173 chr2L 12046492 5` UTR CR44589 + chr2L 12046578 5` UTR CR44589 + chr2L 12046665 5` UTR CR44589 + chr2L_12_12045001 chr2L_12045001 RAL-359 289 chr2L 12067326 12067355 chr2L 12074398 12074427 297 12 7072 7.5 3.5 5.5 1.8 7101 chr2L 12067326 intergenic not near genes chr2L 12070876 intergenic not near genes chr2L 12074427 intergenic not near genes chr2L_12_12070001 chr2L_12070001 RAL-359 290 chr2L 12088327 12088340 chr2L 12088442 12088455 8 115 5.0 3.0 4.0 1.6 128 chr2L 12088327 intergenic CR44593 + chr2L 12088391 intergenic CR44593 + chr2L 12088455 intergenic CR44593 + chr2L_8_12085001 chr2L_12085001 RAL-359 291 chr2L 12131448 12131496 chr2L 12131564 12131612 13 116 5.0 5.0 5.0 2.2 164 chr2L 12131448 intron rho-6 - chr2L 12131530 intron rho-6 - chr2L 12131612 intron rho-6 - chr2L_13_12130001 chr2L_12130001 RAL-359 292 chr2L 12132702 12132746 chr2L 12132808 12132852 12 106 0.0 1.5 0.8 6.7 150 chr2L 12132702 intron rho-6 - chr2L 12132777 intron rho-6 - chr2L 12132852 intron rho-6 - chr2L_12_12130001 chr2L_12130001 RAL-359 293 chr2L 12151885 12151912 chr2L 12151995 12152027 11 111 3.0 2.5 2.8 2.9 142 chr2L 12151885 intron CG31760 + chr2L 12151956 intron CG31760 + chr2L 12152027 intron CG31760 + chr2L_11_12150001 chr2L_12150001 RAL-359 294 chr2L 12153915 12153954 chr2L 12154010 12154051 10 97 5.0 4.5 4.8 1.7 136 chr2L 12153915 exon CG31760 + chr2L 12153983 intron CG31760 + chr2L 12154051 intron CG31760 + chr2L_10_12150001 chr2L_12150001 RAL-359 295 chr2L 12203279 12203322 chr2L 12203380 12203423 9 96 4.0 4.0 4.0 1.8 144 chr2L 12203279 intron aret + chr2L 12203351 intron aret + chr2L 12203423 intron aret + chr2L_9_12200001 chr2L_12200001 RAL-359 296 chr2L 12229565 12229607 chr2L 12229662 12229704 5 97 1.5 0.0 0.8 2.8 139 chr2L 12229565 intron aret + chr2L 12229634 intron aret + chr2L 12229704 intron aret + chr2L_5_12225001 chr2L_12225001 RAL-359 297 chr2L 12236986 12237033 chr2L 12237091 12237133 6 100 2.5 3.0 2.8 1.6 147 chr2L 12236986 intron aret + chr2L 12237060 intron aret + chr2L 12237133 intron aret + chr2L_6_12235001 chr2L_12235001 RAL-359 298 chr2L 12239983 12240020 chr2L 12240084 12240121 9 100 4.0 5.0 4.5 1.6 138 chr2L 12239983 intron aret + chr2L 12240052 intron aret + chr2L 12240121 intron aret + chr2L_9_12240001 chr2L_12240001 RAL-359 299 chr2L 12266521 12266559 chr2L 12266624 12266662 6 101 2.0 3.5 2.8 1.6 141 chr2L 12266521 intron aret + chr2L 12266592 intron aret + chr2L 12266662 intron aret + chr2L_6_12265001 chr2L_12265001 RAL-359 300 chr2L 12268086 12268099 chr2L 12268188 12268201 6 102 4.5 1.0 2.8 1.6 115 chr2L 12268086 intron aret + chr2L 12268144 intron aret + chr2L 12268201 intron aret + chr2L_6_12265001 chr2L_12265001 RAL-359 301 chr2L 12299501 12299526 chr2L 12299603 12299628 4 102 2.5 3.0 2.8 1.1 127 chr2L 12299501 intron aret + chr2L 12299564 intron aret + chr2L 12299628 intron aret + chr2L_4_12295001 chr2L_12295001 RAL-359 302 chr2L 12337278 12337307 chr2L 12337386 12337415 5 108 1.0 0.0 0.5 3.3 137 chr2L 12337278 intergenic not near genes chr2L 12337346 intergenic not near genes chr2L 12337415 intergenic not near genes chr2L_5_12335001 chr2L_12335001 RAL-359 303 chr2L 12357837 12357847 chr2L 12357964 12357974 5 127 0.0 6.5 3.2 1.2 137 chr2L 12357837 intron,exon bru-2 +,CG17010 + chr2L 12357906 intron,3` UTR bru-2 +,CG17010 + chr2L 12357974 intron bru-2 + chr2L_5_12355001 chr2L_12355001 RAL-359 304 chr2L 12384913 12384952 chr2L 12385018 12385057 11 105 4.5 5.0 4.8 1.9 144 chr2L 12384913 intron bru-2 + chr2L 12384985 intron bru-2 + chr2L 12385057 intron bru-2 + chr2L_11_12380001 chr2L_12380001 RAL-359 305 chr2L 12408930 12408956 chr2L 12409041 12409067 4 111 2.5 3.5 3.0 1.0 137 chr2L 12408930 intron vir-1 - chr2L 12408998 intron vir-1 - chr2L 12409067 intron vir-1 - chr2L_4_12405001 chr2L_12405001 RAL-359 306 chr2L 12418863 12418898 chr2L 12418978 12419013 5 115 3.5 4.0 3.8 1.0 150 chr2L 12418863 intron vir-1 - chr2L 12418938 intron vir-1 - chr2L 12419013 intron vir-1 - chr2L_5_12415001 chr2L_12415001 RAL-359 307 chr2L 12487870 12487917 chr2L 12487980 12488020 19 103 3.5 5.5 4.5 3.5 150 chr2L 12487870 intron bun - chr2L 12487945 intron bun - chr2L 12488020 intron bun - chr2L_19_12485001 chr2L_12485001 RAL-359 308 chr2L 12558307 12558346 chr2L 12565455 12565495 HMS-Beagle 8 7147 3.0 2.5 2.8 2.1 7188 chr2L 12558307 intergenic not near genes chr2L 12561901 intergenic not near genes chr2L 12565495 intergenic not near genes chr2L_8_12560001 chr2L_12560001 RAL-359 309 chr2L 12656141 12656190 chr2L 12656297 12656346 14 156 22.5 16.0 19.2 0.7 205 chr2L 12656141 intergenic not near genes chr2L 12656244 intergenic not near genes chr2L 12656346 intergenic not near genes chr2L_14_12655001 chr2L_12655001 RAL-359 310 chr2L 12693820 12693854 chr2L 12693917 12693951 6 97 6.0 0.0 3.0 1.5 131 chr2L 12693820 exon CG6153 + chr2L 12693886 3` UTR,3` UTR CG6153 +,CG5780 - chr2L 12693951 3` UTR CG5780 - chr2L_6_12690001 chr2L_12690001 RAL-359 311 chr2L 12728906 12728945 chr2L 12729167 12729206 pogo 8 261 4.5 1.5 3.0 2.0 300 chr2L 12728906 intron MRP + chr2L 12729056 intron MRP + chr2L 12729206 exon MRP + chr2L_8_12725001 chr2L_12725001 RAL-359 312 chr2L 12731042 12731085 chr2L 12735829 12735872 F-element 9 4785 3.5 5.5 4.5 1.6 4830 chr2L 12731042 intron MRP + chr2L 12733457 intron MRP + chr2L 12735872 intron MRP + chr2L_9_12730001 chr2L_12730001 RAL-359 313 chr2L 12739158 12739197 chr2L 12743959 12743998 Doc 6 4801 4.5 6.0 5.2 1.0 4840 chr2L 12739158 exon MRP + chr2L 12741578 intron MRP + chr2L 12743998 exon MRP + chr2L_6_12740001 chr2L_12740001 RAL-359 314 chr2L 12763812 12763870 chr2L 12764044 12764090 BS 6 224 0.0 0.0 0.0 6.0 278 chr2L 12763812 intergenic not near genes chr2L 12763951 intergenic not near genes chr2L 12764090 intergenic not near genes chr2L_6_12760001 chr2L_12760001 RAL-359 315 chr2L 12781784 12781813 chr2L 12789247 12789266 Quasimodo 6 7460 9.5 3.0 6.2 0.8 7482 chr2L 12781784 intergenic not near genes chr2L 12785525 intergenic not near genes chr2L 12789266 intergenic not near genes chr2L_6_12785001 chr2L_12785001 RAL-359 316 chr2L 12791591 12791627 chr2L 12795286 12795322 F-element 12 3692 3.5 4.0 3.8 2.5 3731 chr2L 12791591 intergenic not near genes chr2L 12793456 intergenic not near genes chr2L 12795322 intergenic not near genes chr2L_12_12790001 chr2L_12790001 RAL-359 317 chr2L 12796875 12796902 chr2L 12796975 12797002 6 100 1.5 1.5 1.5 2.4 127 chr2L 12796875 intergenic not near genes chr2L 12796938 intergenic not near genes chr2L 12797002 intergenic not near genes chr2L_6_12795001 chr2L_12795001 RAL-359 318 chr2L 12837904 12837947 chr2L 12838006 12838049 10 100 3.5 1.5 2.5 2.9 145 chr2L 12837904 intergenic not near genes chr2L 12837976 intergenic not near genes chr2L 12838049 intergenic not near genes chr2L_10_12835001 chr2L_12835001 RAL-359 319 chr2L 12861675 12861727 chr2L 12863162 12863212 hobo 12 1484 1.0 5.0 3.0 3.0 1537 chr2L 12861675 intergenic not near genes chr2L 12862444 intergenic not near genes chr2L 12863212 intergenic not near genes chr2L_12_12860001 chr2L_12860001 RAL-359 320 chr2L 12891495 12891533 chr2L 12891611 12891654 6 118 3.0 3.5 3.2 1.4 159 chr2L 12891495 intergenic not near genes chr2L 12891574 intergenic not near genes chr2L 12891654 intergenic not near genes chr2L_6_12890001 chr2L_12890001 RAL-359 321 chr2L 12930481 12930495 chr2L 12930577 12930591 5 96 1.0 4.5 2.8 1.3 110 chr2L 12930481 intergenic not near genes chr2L 12930536 intergenic not near genes chr2L 12930591 intergenic not near genes chr2L_5_12930001 chr2L_12930001 RAL-359 322 chr2L 12933831 12933879 chr2L 12941318 12941366 blood 16 7485 3.5 4.5 4.0 3.2 7535 chr2L 12933831 intergenic not near genes chr2L 12937598 intergenic not near genes chr2L 12941366 intergenic not near genes chr2L_16_12935001 chr2L_12935001 RAL-359 323 chr2L 12944961 12944964 chr2L 12945129 12945132 4 168 3.5 3.5 3.5 0.9 171 chr2L 12944961 intergenic not near genes chr2L 12945046 intergenic not near genes chr2L 12945132 intergenic not near genes chr2L_4_12945001 chr2L_12945001 RAL-359 324 chr2L 13036226 13036275 chr2L 13036488 13036531 X-element 12 261 2.0 4.5 3.2 2.9 305 chr2L 13036226 intron CG9932 - chr2L 13036378 intron CG9932 - chr2L 13036531 intron CG9932 - chr2L_12_13035001 chr2L_13035001 RAL-359 325 chr2L 13063362 13063399 chr2L 13063458 13063496 4 96 4.0 2.5 3.2 1.0 134 chr2L 13063362 intergenic not near genes chr2L 13063429 intergenic not near genes chr2L 13063496 intergenic not near genes chr2L_4_13060001 chr2L_13060001 RAL-359 326 chr2L 13147727 13147770 chr2L 13147823 13147866 13 96 2.5 3.5 3.0 3.2 139 chr2L 13147727 intergenic not near genes chr2L 13147796 intergenic not near genes chr2L 13147866 intergenic not near genes chr2L_13_13145001 chr2L_13145001 RAL-359 327 chr2L 13231870 13231903 chr2L 13232001 13232034 6 131 7.5 4.5 6.0 0.9 164 chr2L 13231870 intergenic Prosalpha6T + chr2L 13231952 intergenic Prosalpha6T + chr2L 13232034 intergenic Prosalpha6T + chr2L_6_13230001 chr2L_13230001 RAL-359 328 chr2L 13294388 13294422 chr2L 13294483 13294523 4 99 0.5 4.5 2.5 1.1 135 chr2L 13294388 intron CG31729 + chr2L 13294456 intron CG31729 + chr2L 13294523 intron CG31729 + chr2L_4_13290001 chr2L_13290001 RAL-359 329 chr2L 13342027 13342072 chr2L 13342129 13342163 10 99 4.0 0.0 2.0 3.3 136 chr2L 13342027 intergenic not near genes chr2L 13342095 intergenic not near genes chr2L 13342163 intergenic not near genes chr2L_10_13340001 chr2L_13340001 RAL-359 330 chr2L 13369266 13369317 chr2L 13369382 13369433 12 115 6.0 3.5 4.8 2.1 167 chr2L 13369266 5` UTR CG31855 + chr2L 13369350 5` UTR CG31855 + chr2L 13369433 exon CG31855 + chr2L_12_13365001 chr2L_13365001 RAL-359 331 chr2L 13398699 13398748 chr2L 13398799 13398852 6 101 2.0 0.0 1.0 3.0 153 chr2L 13398699 intergenic CG10859 -,CR44600 -,CG7110 + chr2L 13398776 intergenic CR44600 -,CG10859 -,CG7110 + chr2L 13398852 intergenic CR44600 -,CG7110 +,CG10859 - chr2L_6_13395001 chr2L_13395001 RAL-359 332 chr2L 13405633 13405675 chr2L 13410448 13410492 Doc 13 4815 3.5 3.5 3.5 2.9 4859 chr2L 13405633 exon CG7110 + chr2L 13408062 intron CG7110 + chr2L 13410492 intron CG7110 + chr2L_13_13405001 chr2L_13405001 RAL-359 333 chr2L 13449442 13449482 chr2L 13456898 13456938 Quasimodo 11 7456 4.5 7.0 5.8 1.6 7496 chr2L 13449442 intron,5` UTR CG42784 +,Hsp60D - chr2L 13453190 intron CG42784 + chr2L 13456938 intron CG42784 + chr2L_11_13450001 chr2L_13450001 RAL-359 334 chr2L 13463167 13463219 chr2L 13463277 13463306 10 108 4.5 2.5 3.5 2.2 139 chr2L 13463167 intron CG42784 + chr2L 13463236 intron CG42784 + chr2L 13463306 intron CG42784 + chr2L_10_13460001 chr2L_13460001 RAL-359 335 chr2L 13481435 13481464 chr2L 13482056 13482077 jockey 8 622 6.5 1.5 4.0 1.6 642 chr2L 13481435 intron CG42784 + chr2L 13481756 intron CG42784 + chr2L 13482077 intron CG42784 + chr2L_8_13480001 chr2L_13480001 RAL-359 336 chr2L 13560385 13560413 chr2L 13565226 13565254 F-element 12 4841 5.5 5.5 5.5 1.8 4869 chr2L 13560385 intron kuz + chr2L 13562820 intron kuz + chr2L 13565254 intron kuz + chr2L_12_13560001 chr2L_13560001 RAL-359 337 chr2L 13574147 13574201 chr2L 13574246 13574300 12 99 3.0 1.5 2.2 3.8 153 chr2L 13574147 intron kuz + chr2L 13574224 intron kuz + chr2L 13574300 intron kuz + chr2L_12_13570001 chr2L_13570001 RAL-359 338 chr2L 13622114 13622154 chr2L 13622233 13622271 7 112 3.5 0.5 2.0 2.3 157 chr2L 13622114 intron kuz + chr2L 13622192 intron kuz + chr2L 13622271 intron kuz + chr2L_7_13620001 chr2L_13620001 RAL-359 339 chr2L 13629554 13629592 chr2L 13629650 13629689 9 97 4.0 5.5 4.8 1.6 135 chr2L 13629554 intron kuz + chr2L 13629622 intron kuz + chr2L 13629689 intron kuz + chr2L_9_13625001 chr2L_13625001 RAL-359 340 chr2L 13676678 13676964 chr2L 13676776 13677075 20 106 6.5 3.5 5.0 3.3 397 chr2L 13676678 intergenic CG31814 - chr2L 13676876 3` UTR CG31814 - chr2L 13677075 3` UTR CG31814 - chr2L_20_13675001 chr2L_13675001 RAL-359 341 chr2L 13693473 13693477 chr2L 13693592 13693602 4 123 9.0 4.0 6.5 0.5 129 chr2L 13693473 intron CG31814 - chr2L 13693538 intron CG31814 - chr2L 13693602 intron CG31814 - chr2L_4_13690001 chr2L_13690001 RAL-359 342 chr2L 13693485 13693514 chr2L 13693587 13693640 6 118 4.0 4.0 4.0 1.2 155 chr2L 13693485 intron CG31814 - chr2L 13693562 intron CG31814 - chr2L 13693640 intron CG31814 - chr2L_6_13690001 chr2L_13690001 RAL-359 343 chr2L 13713543 13713574 chr2L 13713639 13713670 6 96 2.0 3.0 2.5 1.7 127 chr2L 13713543 intron CG31814 - chr2L 13713606 intron CG31814 - chr2L 13713670 intron CG31814 - chr2L_6_13710001 chr2L_13710001 RAL-359 344 chr2L 13749192 13749210 chr2L 13749295 13749313 9 103 0.0 0.0 0.0 9.0 121 chr2L 13749192 intron,intron CR44846 +,TM9SF4 + chr2L 13749252 intron,intron CR44846 +,TM9SF4 + chr2L 13749313 intron,intron CR44846 +,TM9SF4 + chr2L_9_13745001 chr2L_13745001 RAL-359 345 chr2L 13761791 13761825 chr2L 13762922 13762956 Doc 7 1131 5.5 3.0 4.2 1.3 1165 chr2L 13761791 intron TM9SF4 + chr2L 13762374 intron TM9SF4 + chr2L 13762956 intron TM9SF4 + chr2L_7_13760001 chr2L_13760001 RAL-359 346 chr2L 13803277 13803313 chr2L 13803373 13803415 5 97 8.5 0.5 4.5 0.9 138 chr2L 13803277 intergenic CAH1 + chr2L 13803346 intergenic CAH1 + chr2L 13803415 intergenic CAH1 + chr2L_5_13800001 chr2L_13800001 RAL-359 347 chr2L 13846153 13846203 chr2L 13846256 13846306 14 101 4.0 1.0 2.5 4.0 153 chr2L 13846153 intron CenG1A + chr2L 13846230 intron CenG1A + chr2L 13846306 intron CenG1A + chr2L_14_13845001 chr2L_13845001 RAL-359 348 chr2L 13853086 13853115 chr2L 13862244 13862285 roo 11 9168 4.0 2.5 3.2 2.6 9199 chr2L 13853086 intron CenG1A + chr2L 13857686 intron CenG1A + chr2L 13862285 intron CenG1A + chr2L_11_13855001 chr2L_13855001 RAL-359 349 chr2L 13914794 13914840 chr2L 13914893 13914940 7 99 3.5 2.5 3.0 1.8 146 chr2L 13914794 5` UTR Ance-3 + chr2L 13914867 5` UTR Ance-3 + chr2L 13914940 5` UTR Ance-3 + chr2L_7_13910001 chr2L_13910001 RAL-359 350 chr2L 13988260 13988302 chr2L 13988367 13988409 6 107 2.0 4.0 3.0 1.5 149 chr2L 13988260 intron rk - chr2L 13988334 intron rk - chr2L 13988409 intron rk - chr2L_6_13985001 chr2L_13985001 RAL-359 351 chr2L 14149700 14149743 chr2L 14149797 14149840 4 96 6.5 2.0 4.2 0.8 140 chr2L 14149700 intron CG17341 + chr2L 14149770 intron CG17341 + chr2L 14149840 intron CG17341 + chr2L_4_14145001 chr2L_14145001 RAL-359 352 chr2L 14229606 14229636 chr2L 14229719 14229749 7 112 0.0 4.5 2.2 2.2 143 chr2L 14229606 intron Dyrk2 - chr2L 14229678 intron Dyrk2 - chr2L 14229749 intron Dyrk2 - chr2L_7_14225001 chr2L_14225001 RAL-359 353 chr2L 14290779 14290821 chr2L 14290879 14290921 11 100 2.5 7.5 5.0 1.8 142 chr2L 14290779 intron wb + chr2L 14290850 intron wb + chr2L 14290921 intron wb + chr2L_11_14290001 chr2L_14290001 RAL-359 354 chr2L 14307887 14307898 chr2L 14307994 14308005 4 107 0.0 4.5 2.2 1.2 118 chr2L 14307887 intron wb + chr2L 14307946 intron wb + chr2L 14308005 intron wb + chr2L_4_14305001 chr2L_14305001 RAL-359 355 chr2L 14374772 14374802 chr2L 14374883 14374913 6 111 0.0 3.0 1.5 2.4 141 chr2L 14374772 intergenic not near genes chr2L 14374842 intergenic not near genes chr2L 14374913 intergenic not near genes chr2L_6_14370001 chr2L_14370001 RAL-359 356 chr2L 14427496 14427546 chr2L 14427607 14427657 10 111 1.5 2.5 2.0 3.3 161 chr2L 14427496 intergenic not near genes chr2L 14427576 intergenic not near genes chr2L 14427657 intergenic not near genes chr2L_10_14425001 chr2L_14425001 RAL-359 357 chr2L 14465593 14465617 chr2L 14469090 14469114 hopper2 4 3497 3.0 1.0 2.0 1.3 3521 chr2L 14465593 intergenic not near genes chr2L 14467354 intergenic not near genes chr2L 14469114 intergenic not near genes chr2L_4_14465001 chr2L_14465001 RAL-359 358 chr2L 14486876 14486890 chr2L 14486976 14486990 4 100 3.0 2.5 2.8 1.1 114 chr2L 14486876 intergenic CR44731 + chr2L 14486933 intergenic CR44731 + chr2L 14486990 intergenic CR44731 + chr2L_4_14485001 chr2L_14485001 RAL-359 359 chr2L 14555126 14555152 chr2L 14555225 14555251 4 98 7.5 3.5 5.5 0.6 125 chr2L 14555126 intergenic not near genes chr2L 14555188 intergenic not near genes chr2L 14555251 intergenic not near genes chr2L_4_14555001 chr2L_14555001 RAL-359 360 chr2L 14601977 14601997 chr2L 14602081 14602096 5 103 4.5 5.5 5.0 0.8 119 chr2L 14601977 exon osp - chr2L 14602036 intron osp - chr2L 14602096 intron osp - chr2L_5_14600001 chr2L_14600001 RAL-359 361 chr2L 14617869 14617921 chr2L 14617969 14618021 10 99 1.0 3.0 2.0 3.3 152 chr2L 14617869 intron,intron,intron osp -,Adh +,Adhr + chr2L 14617945 intron,intron,intron osp -,Adh +,Adhr + chr2L 14618021 intron,intron,intron osp -,Adh +,Adhr + chr2L_10_14615001 chr2L_14615001 RAL-359 362 chr2L 14715524 14715566 chr2L 14715631 14715677 9 109 2.5 4.5 3.5 2.0 153 chr2L 14715524 intergenic not near genes chr2L 14715600 intergenic not near genes chr2L 14715677 intergenic not near genes chr2L_9_14715001 chr2L_14715001 RAL-359 363 chr2L 14769870 14769905 chr2L 14769972 14770007 12 102 3.0 2.5 2.8 3.2 137 chr2L 14769870 intergenic not near genes chr2L 14769938 intergenic not near genes chr2L 14770007 intergenic not near genes chr2L_12_14765001 chr2L_14765001 RAL-359 364 chr2L 14774207 14774254 chr2L 14774444 14774491 22 236 3.0 4.5 3.8 4.6 284 chr2L 14774207 3` UTR CG4650 - chr2L 14774349 3` UTR CG4650 - chr2L 14774491 3` UTR CG4650 - chr2L_22_14770001 chr2L_14770001 RAL-359 365 chr2L 14803865 14803882 chr2L 14809088 14809105 copia 5 5223 8.5 4.5 6.5 0.7 5240 chr2L 14803865 intergenic not near genes chr2L 14806485 intergenic not near genes chr2L 14809105 intergenic not near genes chr2L_5_14805001 chr2L_14805001 RAL-359 366 chr2L 14803891 14803905 chr2L 14809087 14809127 copia 4 5208 4.5 4.5 4.5 0.7 5236 chr2L 14803891 intergenic not near genes chr2L 14806509 intergenic not near genes chr2L 14809127 intergenic not near genes chr2L_4_14805001 chr2L_14805001 RAL-359 367 chr2L 14833771 14833822 chr2L 14833895 14833946 12 122 3.0 3.0 3.0 3.0 175 chr2L 14833771 intergenic not near genes chr2L 14833858 intergenic not near genes chr2L 14833946 intergenic not near genes chr2L_12_14830001 chr2L_14830001 RAL-359 368 chr2L 14840987 14841003 chr2L 14841086 14841110 5 105 2.0 3.0 2.5 1.4 123 chr2L 14840987 3` UTR CR43805 - chr2L 14841048 3` UTR CR43805 - chr2L 14841110 3` UTR CR43805 - chr2L_5_14840001 chr2L_14840001 RAL-359 369 chr2L 14854938 14854986 chr2L 14855036 14855083 11 94 4.5 3.5 4.0 2.2 145 chr2L 14854938 intergenic not near genes chr2L 14855010 intergenic not near genes chr2L 14855083 intergenic not near genes chr2L_11_14855001 chr2L_14855001 RAL-359 370 chr2L 14889940 14889981 chr2L 14890385 14890426 jockey 10 445 2.5 2.0 2.2 3.1 486 chr2L 14889940 intergenic not near genes chr2L 14890183 intergenic not near genes chr2L 14890426 intergenic not near genes chr2L_10_14890001 chr2L_14890001 RAL-359 371 chr2L 14984381 14984387 chr2L 14991981 14992009 opus 4 7616 4.5 2.0 3.2 1.0 7628 chr2L 14984381 intron mol - chr2L 14988195 intron mol - chr2L 14992009 intron mol - chr2L_4_14985001 chr2L_14985001 RAL-359 372 chr2L 15014608 15014652 chr2L 15014707 15014751 8 98 0.0 3.5 1.8 2.9 143 chr2L 15014608 intergenic not near genes chr2L 15014680 intergenic not near genes chr2L 15014751 intergenic not near genes chr2L_8_15010001 chr2L_15010001 RAL-359 373 chr2L 15078057 15078088 chr2L 15078165 15078196 9 108 6.0 6.5 6.2 1.2 139 chr2L 15078057 intron CG15270 + chr2L 15078126 intron CG15270 + chr2L 15078196 intron CG15270 + chr2L_9_15075001 chr2L_15075001 RAL-359 374 chr2L 15163922 15163934 chr2L 15164019 15164031 4 97 1.5 0.0 0.8 2.2 109 chr2L 15163922 intron CG4168 - chr2L 15163976 intron CG4168 - chr2L 15164031 intron CG4168 - chr2L_4_15160001 chr2L_15160001 RAL-359 375 chr2L 15170606 15170649 chr2L 15170719 15170762 10 111 5.0 0.0 2.5 2.9 156 chr2L 15170606 intron CG4168 - chr2L 15170684 intron CG4168 - chr2L 15170762 intron CG4168 - chr2L_10_15170001 chr2L_15170001 RAL-359 376 chr2L 15174417 15174444 chr2L 15174901 15174934 5 483 2.0 1.0 1.5 2.0 517 chr2L 15174417 intron CG4168 - chr2L 15174676 intron CG4168 - chr2L 15174934 intron CG4168 - chr2L_5_15170001 chr2L_15170001 RAL-359 377 chr2L 15181772 15181810 chr2L 15181915 15181952 6 143 2.5 2.5 2.5 1.7 180 chr2L 15181772 intron CG4168 - chr2L 15181862 intron CG4168 - chr2L 15181952 intron CG4168 - chr2L_6_15180001 chr2L_15180001 RAL-359 378 chr2L 15219663 15219687 chr2L 15219760 15219784 7 96 4.5 6.5 5.5 1.1 121 chr2L 15219663 intergenic not near genes chr2L 15219724 intergenic not near genes chr2L 15219784 intergenic not near genes chr2L_7_15215001 chr2L_15215001 RAL-359 379 chr2L 15282703 15282728 chr2L 15283047 15283089 7 353 2.5 3.0 2.8 1.8 386 chr2L 15282703 intergenic not near genes chr2L 15282896 intergenic not near genes chr2L 15283089 intergenic not near genes chr2L_7_15280001 chr2L_15280001 RAL-359 380 chr2L 15343519 15343535 chr2L 15343624 15343640 6 105 5.5 0.0 2.8 1.6 121 chr2L 15343519 intergenic not near genes chr2L 15343580 intergenic not near genes chr2L 15343640 intergenic not near genes chr2L_6_15340001 chr2L_15340001 RAL-359 381 chr2L 15352950 15352991 chr2L 15353046 15353087 15 94 4.5 4.0 4.2 2.9 137 chr2L 15352950 intergenic not near genes chr2L 15353018 intergenic not near genes chr2L 15353087 intergenic not near genes chr2L_15_15350001 chr2L_15350001 RAL-359 382 chr2L 15446048 15446083 chr2L 15453537 15453558 blood 8 7486 4.0 5.0 4.5 1.5 7510 chr2L 15446048 intergenic not near genes chr2L 15449803 intergenic not near genes chr2L 15453558 intergenic not near genes chr2L_8_15445001 chr2L_15445001 RAL-359 383 chr2L 15514303 15514325 chr2L 15514407 15514429 9 104 8.5 8.0 8.2 1.0 126 chr2L 15514303 intergenic not near genes chr2L 15514366 intergenic not near genes chr2L 15514429 intergenic not near genes chr2L_9_15510001 chr2L_15510001 RAL-359 384 chr2L 15535873 15535911 chr2L 15535983 15536021 14 109 5.5 7.0 6.2 1.9 148 chr2L 15535873 intergenic not near genes chr2L 15535947 intergenic not near genes chr2L 15536021 intergenic not near genes chr2L_14_15535001 chr2L_15535001 RAL-359 385 chr2L 15586394 15586438 chr2L 15593466 15593510 297 14 7072 8.0 7.0 7.5 1.6 7116 chr2L 15586394 intergenic not near genes chr2L 15589952 intergenic not near genes chr2L 15593510 intergenic not near genes chr2L_14_15585001 chr2L_15585001 RAL-359 386 chr2L 15730870 15730890 chr2L 15730975 15730995 4 105 2.5 2.5 2.5 1.1 125 chr2L 15730870 intron CycE - chr2L 15730932 intron CycE - chr2L 15730995 intron CycE - chr2L_4_15730001 chr2L_15730001 RAL-359 387 chr2L 15761103 15761106 chr2L 15761203 15761206 4 100 0.0 6.0 3.0 1.0 103 chr2L 15761103 intron Gli - chr2L 15761154 intron Gli - chr2L 15761206 intron Gli - chr2L_4_15760001 chr2L_15760001 RAL-359 388 chr2L 15790168 15790216 chr2L 15790263 15790312 11 95 5.0 5.0 5.0 1.8 144 chr2L 15790168 intergenic CG18109 + chr2L 15790240 intergenic CG18109 + chr2L 15790312 intergenic CG18109 + chr2L_11_15790001 chr2L_15790001 RAL-359 389 chr2L 15823335 15823366 chr2L 15823431 15823461 6 96 4.5 2.0 3.2 1.4 126 chr2L 15823335 intergenic CR44601 - chr2L 15823398 intergenic CR44601 - chr2L 15823461 intergenic not near genes chr2L_6_15820001 chr2L_15820001 RAL-359 390 chr2L 15826875 15826893 chr2L 15829288 15829307 Tabor 5 2414 3.5 6.0 4.8 0.9 2432 chr2L 15826875 intergenic not near genes chr2L 15828091 intergenic not near genes chr2L 15829307 intergenic not near genes chr2L_5_15825001 chr2L_15825001 RAL-359 391 chr2L 15862735 15862764 chr2L 15866677 15866706 8 3942 27.0 3.5 15.2 0.5 3971 chr2L 15862735 intergenic CR42791 + chr2L 15864720 intergenic CG42792 - chr2L 15866706 intergenic not near genes chr2L_8_15860001 chr2L_15860001 RAL-359 392 chr2L 15932843 15932889 chr2L 15932945 15932991 13 99 5.5 4.0 4.8 2.2 148 chr2L 15932843 intron beat-Ib - chr2L 15932917 intron beat-Ib - chr2L 15932991 intron beat-Ib - chr2L_13_15930001 chr2L_15930001 RAL-359 393 chr2L 15956006 15956055 chr2L 15957492 15957541 hobo 14 1483 5.5 1.5 3.5 3.1 1535 chr2L 15956006 intron beat-Ib - chr2L 15956774 intron beat-Ib - chr2L 15957541 intron beat-Ib - chr2L_14_15955001 chr2L_15955001 RAL-359 394 chr2L 16027379 16027416 chr2L 16027475 16027512 6 96 4.0 1.5 2.8 1.6 133 chr2L 16027379 intron beat-Ic + chr2L 16027446 intron beat-Ic + chr2L 16027512 intron beat-Ic + chr2L_6_16025001 chr2L_16025001 RAL-359 395 chr2L 16069259 16069296 chr2L 16069346 16069396 4 98 1.0 2.5 1.8 1.4 137 chr2L 16069259 intron beat-Ia + chr2L 16069328 intron beat-Ia + chr2L 16069396 intron beat-Ia + chr2L_4_16065001 chr2L_16065001 RAL-359 396 chr2L 16115507 16115541 chr2L 16115603 16115637 7 96 5.5 5.0 5.2 1.1 130 chr2L 16115507 intergenic not near genes chr2L 16115572 intergenic not near genes chr2L 16115637 intergenic not near genes chr2L_7_16115001 chr2L_16115001 RAL-359 397 chr2L 16141148 16141183 chr2L 16146374 16146410 copia 14 5227 5.0 3.0 4.0 2.8 5262 chr2L 16141148 intergenic not near genes chr2L 16143779 intergenic not near genes chr2L 16146410 intergenic not near genes chr2L_14_16140001 chr2L_16140001 RAL-359 398 chr2L 16153723 16153759 chr2L 16160811 16160847 297 12 7085 2.0 2.0 2.0 4.0 7124 chr2L 16153723 intergenic not near genes chr2L 16157285 intergenic not near genes chr2L 16160847 intergenic not near genes chr2L_12_16155001 chr2L_16155001 RAL-359 399 chr2L 9084337 9084340 chr2L 16217660 16217660 4 7133321 12.5 22.0 17.2 0.2 7133323 chr2L 9084337 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_4_12650001 chr2L_12650001 RAL-359 400 chr2L 16243681 16243693 chr2L 16243783 16243795 5 102 0.0 5.0 2.5 1.4 114 chr2L 16243681 exon CG42818 + chr2L 16243738 exon CG42818 + chr2L 16243795 exon CG42818 + chr2L_5_16240001 chr2L_16240001 RAL-359 401 chr2L 16363921 16363958 chr2L 16364187 16364224 6 266 1.5 1.5 1.5 2.4 303 chr2L 16363921 intergenic not near genes chr2L 16364072 intergenic not near genes chr2L 16364224 intergenic not near genes chr2L_6_16360001 chr2L_16360001 RAL-359 402 chr2L 16391794 16391832 chr2L 16391890 16391928 4 96 3.0 1.0 2.0 1.3 134 chr2L 16391794 intergenic not near genes chr2L 16391861 intergenic not near genes chr2L 16391928 intergenic not near genes chr2L_4_16390001 chr2L_16390001 RAL-359 403 chr2L 16427065 16427086 chr2L 16427163 16427184 7 98 3.0 1.0 2.0 2.3 119 chr2L 16427065 intron CG5888 - chr2L 16427124 intron CG5888 - chr2L 16427184 intron CG5888 - chr2L_7_16425001 chr2L_16425001 RAL-359 404 chr2L 16511942 16511992 chr2L 16519076 16519126 HMS-Beagle 15 7134 5.5 4.5 5.0 2.5 7184 chr2L 16511942 intron CG5953 - chr2L 16515534 intron CG5953 - chr2L 16519126 intron CG5953 - chr2L_15_16515001 chr2L_16515001 RAL-359 405 chr2L 16621598 16621647 chr2L 16621696 16621745 12 96 3.0 4.5 3.8 2.5 147 chr2L 16621598 intron CG42389 + chr2L 16621672 intron CG42389 + chr2L 16621745 intron CG42389 + chr2L_12_16620001 chr2L_16620001 RAL-359 406 chr2L 16641398 16641436 chr2L 16641504 16641542 7 106 3.5 1.5 2.5 2.0 144 chr2L 16641398 intron CG42389 + chr2L 16641470 intron CG42389 + chr2L 16641542 intron CG42389 + chr2L_7_16640001 chr2L_16640001 RAL-359 407 chr2L 16695118 16695145 chr2L 16695221 16695238 6 100 3.0 6.5 4.8 1.0 120 chr2L 16695118 intron grp + chr2L 16695178 intron grp + chr2L 16695238 intron grp + chr2L_6_16695001 chr2L_16695001 RAL-359 408 chr2L 16697052 16697063 chr2L 16697265 16697276 4 213 3.0 0.0 1.5 1.6 224 chr2L 16697052 intron grp + chr2L 16697164 intron grp + chr2L 16697276 intron grp + chr2L_4_16695001 chr2L_16695001 RAL-359 409 chr2L 16701436 16701483 chr2L 16701535 16701571 16 98 8.0 4.0 6.0 2.3 135 chr2L 16701436 intergenic not near genes chr2L 16701504 intergenic not near genes chr2L 16701571 intergenic not near genes chr2L_16_16700001 chr2L_16700001 RAL-359 410 chr2L 16703843 16703889 chr2L 16703946 16703992 10 101 2.5 4.5 3.5 2.2 149 chr2L 16703843 intergenic CG31808 - chr2L 16703918 intergenic CG31808 - chr2L 16703992 intergenic CG31808 - chr2L_10_16700001 chr2L_16700001 RAL-359 411 chr2L 16728915 16728955 chr2L 16729570 16729586 9 652 3.0 10.0 6.5 1.2 671 chr2L 16728915 intergenic not near genes chr2L 16729250 intergenic not near genes chr2L 16729586 intergenic CG31812 + chr2L_9_16725001 chr2L_16725001 RAL-359 412 chr2L 16764948 16764995 chr2L 16765048 16765095 7 99 0.0 1.0 0.5 4.7 147 chr2L 16764948 intergenic not near genes chr2L 16765022 intergenic not near genes chr2L 16765095 intergenic not near genes chr2L_7_16765001 chr2L_16765001 RAL-359 413 chr2L 16818719 16818745 chr2L 16819064 16819090 7 340 5.5 5.5 5.5 1.1 371 chr2L 16818719 intron,intron CG13280 -,mdy + chr2L 16818904 intron,intron CG13280 -,mdy + chr2L 16819090 intron,intron CG13280 -,mdy + chr2L_7_16815001 chr2L_16815001 RAL-359 414 chr2L 16852415 16852451 chr2L 16852513 16852548 7 98 3.0 3.5 3.2 1.7 133 chr2L 16852415 intergenic CG31810 - chr2L 16852482 intergenic CG31810 - chr2L 16852548 intergenic CG31810 - chr2L_7_16850001 chr2L_16850001 RAL-359 415 chr2L 16867007 16867020 chr2L 16867122 16867135 4 115 3.0 3.5 3.2 1.0 128 chr2L 16867007 intergenic not near genes chr2L 16867071 intergenic not near genes chr2L 16867135 intergenic not near genes chr2L_4_16865001 chr2L_16865001 RAL-359 416 chr2L 16958088 16958135 chr2L 16962896 16962934 Doc 17 4807 1.5 2.5 2.0 5.7 4846 chr2L 16958088 intergenic not near genes chr2L 16960511 intergenic not near genes chr2L 16962934 intergenic not near genes chr2L_17_16960001 chr2L_16960001 RAL-359 417 chr2L 16999009 16999031 chr2L 16999108 16999130 5 99 0.0 4.5 2.2 1.6 121 chr2L 16999009 intergenic CR45357 +,CR45356 + chr2L 16999070 intergenic CR45357 + chr2L 16999130 intergenic CR45357 + chr2L_5_16995001 chr2L_16995001 RAL-359 418 chr2L 17000122 17000150 chr2L 17000264 17000292 8 141 2.0 4.0 3.0 2.0 170 chr2L 17000122 intergenic not near genes chr2L 17000207 intergenic not near genes chr2L 17000292 intergenic not near genes chr2L_8_17000001 chr2L_17000001 RAL-359 419 chr2L 17032482 17032521 chr2L 17032587 17032626 8 105 2.0 0.5 1.2 3.6 144 chr2L 17032482 intergenic not near genes chr2L 17032554 intergenic not near genes chr2L 17032626 intergenic not near genes chr2L_8_17030001 chr2L_17030001 RAL-359 420 chr2L 17036843 17036890 chr2L 17036953 17037000 22 110 4.5 5.0 4.8 3.8 157 chr2L 17036843 intergenic not near genes chr2L 17036922 intergenic not near genes chr2L 17037000 intergenic not near genes chr2L_22_17035001 chr2L_17035001 RAL-359 421 chr2L 17043598 17043642 chr2L 17043699 17043745 8 103 5.5 2.5 4.0 1.6 147 chr2L 17043598 intergenic CR43802 - chr2L 17043672 intergenic not near genes chr2L 17043745 intergenic not near genes chr2L_8_17040001 chr2L_17040001 RAL-359 422 chr2L 17052392 17052443 chr2L 17052524 17052575 11 131 2.0 2.5 2.2 3.4 183 chr2L 17052392 intergenic not near genes chr2L 17052484 intergenic not near genes chr2L 17052575 intergenic not near genes chr2L_11_17050001 chr2L_17050001 RAL-359 423 chr2L 17054664 17054714 chr2L 17054780 17054824 7 115 0.5 2.5 1.5 2.8 160 chr2L 17054664 intergenic not near genes chr2L 17054744 intergenic not near genes chr2L 17054824 intergenic not near genes chr2L_7_17050001 chr2L_17050001 RAL-359 424 chr2L 17101889 17101914 chr2L 17101986 17102011 4 96 2.5 6.5 4.5 0.7 122 chr2L 17101889 intergenic not near genes chr2L 17101950 intergenic not near genes chr2L 17102011 intergenic not near genes chr2L_4_17100001 chr2L_17100001 RAL-359 425 chr2L 17120821 17120872 chr2L 17120920 17120963 16 96 3.5 1.5 2.5 4.6 142 chr2L 17120821 intergenic not near genes chr2L 17120892 intergenic not near genes chr2L 17120963 intergenic not near genes chr2L_16_17120001 chr2L_17120001 RAL-359 426 chr2L 17141296 17141325 chr2L 17141406 17141435 7 110 0.5 3.0 1.8 2.5 139 chr2L 17141296 intron,intron CG34106 +,beat-IIIa + chr2L 17141366 intron,intron CG34106 +,beat-IIIa + chr2L 17141435 intron,intron CG34106 +,beat-IIIa + chr2L_7_17140001 chr2L_17140001 RAL-359 427 chr2L 17167546 17167596 chr2L 17167807 17167857 pogo 10 261 3.0 3.5 3.2 2.4 311 chr2L 17167546 intron,intron CG34106 +,beat-IIIa + chr2L 17167702 intron,intron CG34106 +,beat-IIIa + chr2L 17167857 intron,intron CG34106 +,beat-IIIa + chr2L_10_17165001 chr2L_17165001 RAL-359 428 chr2L 17173242 17173263 chr2L 17173338 17173359 7 96 4.5 0.0 2.2 2.2 117 chr2L 17173242 intergenic CG34106 +,beat-IIIa +,CG34169 + chr2L 17173300 intergenic CG34169 +,CG34106 +,beat-IIIa + chr2L 17173359 intergenic CG34169 +,CG34106 +,beat-IIIa + chr2L_7_17170001 chr2L_17170001 RAL-359 429 chr2L 17238848 17239070 chr2L 17239030 17239174 18 133 0.0 0.0 0.0 18.0 326 chr2L 17238848 intron beat-IIIc - chr2L 17239011 intron beat-IIIc - chr2L 17239174 intron beat-IIIc - chr2L_18_17235001 chr2L_17235001 RAL-359 430 chr2L 17264734 17264770 chr2L 17264834 17264870 7 99 2.0 4.5 3.2 1.7 136 chr2L 17264734 intergenic not near genes chr2L 17264802 intergenic not near genes chr2L 17264870 intergenic not near genes chr2L_7_17260001 chr2L_17260001 RAL-359 431 chr2L 17292343 17292390 chr2L 17292443 17292490 15 100 2.0 3.5 2.8 3.9 147 chr2L 17292343 intergenic CG6380 - chr2L 17292416 intergenic CG6380 - chr2L 17292490 intergenic CG6380 - chr2L_15_17290001 chr2L_17290001 RAL-359 432 chr2L 17325442 17325483 chr2L 17325548 17325589 6 106 1.0 1.0 1.0 3.0 147 chr2L 17325442 intergenic not near genes chr2L 17325516 intergenic not near genes chr2L 17325589 intergenic not near genes chr2L_6_17325001 chr2L_17325001 RAL-359 433 chr2L 17327901 17327928 chr2L 17328007 17328034 6 104 5.5 8.5 7.0 0.8 133 chr2L 17327901 intergenic not near genes chr2L 17327968 intergenic not near genes chr2L 17328034 intergenic not near genes chr2L_6_17325001 chr2L_17325001 RAL-359 434 chr2L 17329053 17329087 chr2L 17329201 17329235 5 147 4.5 1.0 2.8 1.3 182 chr2L 17329053 intergenic not near genes chr2L 17329144 intergenic not near genes chr2L 17329235 intergenic not near genes chr2L_5_17325001 chr2L_17325001 RAL-359 435 chr2L 17360004 17360032 chr2L 17360200 17360230 8 198 6.0 0.0 3.0 2.0 226 chr2L 17360004 intergenic not near genes chr2L 17360117 intergenic not near genes chr2L 17360230 intergenic not near genes chr2L_8_17360001 chr2L_17360001 RAL-359 436 chr2L 17424712 17424734 chr2L 17424844 17424866 5 132 1.5 0.5 1.0 2.5 154 chr2L 17424712 intron Dif - chr2L 17424789 intron Dif - chr2L 17424866 intron Dif - chr2L_5_17420001 chr2L_17420001 RAL-359 437 chr2L 17432017 17432040 chr2L 17432144 17432167 1360 4 127 0.0 5.0 2.5 1.1 150 chr2L 17432017 intron Dif - chr2L 17432092 intron Dif - chr2L 17432167 intron Dif - chr2L_4_17430001 chr2L_17430001 RAL-359 438 chr2L 17447324 17447333 chr2L 17447445 17447454 4 121 6.0 5.5 5.8 0.6 130 chr2L 17447324 intron dl - chr2L 17447389 intron dl - chr2L 17447454 intron dl - chr2L_4_17445001 chr2L_17445001 RAL-359 439 chr2L 17543575 17543618 chr2L 17543688 17543730 12 112 6.0 1.0 3.5 2.7 155 chr2L 17543575 intergenic not near genes chr2L 17543652 intergenic not near genes chr2L 17543730 intergenic not near genes chr2L_12_17540001 chr2L_17540001 RAL-359 440 chr2L 17565355 17565384 chr2L 17565466 17565495 6 111 5.5 0.0 2.8 1.6 140 chr2L 17565355 intergenic not near genes chr2L 17565425 intergenic not near genes chr2L 17565495 intergenic not near genes chr2L_6_17565001 chr2L_17565001 RAL-359 441 chr2L 17709115 17709151 chr2L 17709219 17709255 9 104 0.5 2.5 1.5 3.6 140 chr2L 17709115 intron CadN - chr2L 17709185 intron CadN - chr2L 17709255 intron CadN - chr2L_9_17705001 chr2L_17705001 RAL-359 442 chr2L 17710010 17710061 chr2L 17710126 17710177 13 113 3.0 5.0 4.0 2.6 167 chr2L 17710010 intron CadN - chr2L 17710094 intron CadN - chr2L 17710177 intron CadN - chr2L_13_17710001 chr2L_17710001 RAL-359 443 chr2L 17723768 17723781 chr2L 17723881 17723889 4 112 2.0 3.0 2.5 1.1 121 chr2L 17723768 intron CadN - chr2L 17723828 intron CadN - chr2L 17723889 intron CadN - chr2L_4_17720001 chr2L_17720001 RAL-359 444 chr2L 17819917 17819948 chr2L 17825139 17825170 copia 4 5222 3.0 4.5 3.8 0.8 5253 chr2L 17819917 intron CadN2 - chr2L 17822544 intron CadN2 - chr2L 17825170 intron CadN2 - chr2L_4_17820001 chr2L_17820001 RAL-359 445 chr2L 17887025 17887072 chr2L 17887213 17887260 11 188 2.5 1.5 2.0 3.7 235 chr2L 17887025 intergenic not near genes chr2L 17887142 intergenic not near genes chr2L 17887260 intergenic not near genes chr2L_11_17885001 chr2L_17885001 RAL-359 446 chr2L 17911951 17911990 chr2L 17914149 17914188 pogo 6 2198 2.0 2.5 2.2 1.9 2237 chr2L 17911951 intergenic not near genes chr2L 17913070 intergenic not near genes chr2L 17914188 intergenic CG43271 - chr2L_6_17910001 chr2L_17910001 RAL-359 447 chr2L 17951928 17951976 chr2L 17953415 17953463 hobo 14 1487 5.0 7.5 6.2 1.9 1535 chr2L 17951928 intergenic CR44398 -,CR44397 - chr2L 17952696 intergenic not near genes chr2L 17953463 intergenic not near genes chr2L_14_17950001 chr2L_17950001 RAL-359 448 chr2L 18051863 18051895 chr2L 18061030 18061051 roo 7 9165 7.0 5.5 6.2 1.0 9188 chr2L 18051863 intron rdo + chr2L 18056457 intron rdo + chr2L 18061051 intron rdo + chr2L_7_18055001 chr2L_18055001 RAL-359 449 chr2L 18090658 18090700 chr2L 18090766 18090808 9 108 6.5 3.5 5.0 1.5 150 chr2L 18090658 intergenic CG15153 - chr2L 18090733 intergenic CG15153 - chr2L 18090808 3` UTR CG15153 - chr2L_9_18090001 chr2L_18090001 RAL-359 450 chr2L 18128894 18128921 chr2L 18128994 18129022 7 94 3.0 2.5 2.8 1.8 128 chr2L 18128894 exon CG5758 + chr2L 18128958 3` UTR CG5758 + chr2L 18129022 3` UTR CG5758 + chr2L_7_18125001 chr2L_18125001 RAL-359 451 chr2L 18130447 18130495 chr2L 18130558 18130606 11 111 6.0 6.0 6.0 1.6 159 chr2L 18130447 3` UTR kel - chr2L 18130526 3` UTR kel - chr2L 18130606 3` UTR kel - chr2L_11_18130001 chr2L_18130001 RAL-359 452 chr2L 18134999 18135003 chr2L 18135107 18135111 4 108 3.5 0.0 1.8 1.4 112 chr2L 18134999 intron kel - chr2L 18135055 intron kel - chr2L 18135111 intron kel - chr2L_4_18135001 chr2L_18135001 RAL-359 453 chr2L 18184980 18185018 chr2L 18185118 18185156 13 138 1.5 1.5 1.5 5.2 176 chr2L 18184980 intron,5` UTR CG42750 -,CG7180 - chr2L 18185068 intron CG42750 - chr2L 18185156 intron CG42750 - chr2L_13_18185001 chr2L_18185001 RAL-359 454 chr2L 18214452 18214472 chr2L 18214692 18214712 4 240 0.0 3.5 1.8 1.4 260 chr2L 18214452 intron CG42750 - chr2L 18214582 intron CG42750 - chr2L 18214712 intron CG42750 - chr2L_4_18210001 chr2L_18210001 RAL-359 455 chr2L 18218602 18218618 chr2L 18218710 18218726 4 107 0.5 3.5 2.0 1.3 124 chr2L 18218602 intron CG42750 - chr2L 18218664 intron CG42750 - chr2L 18218726 intron CG42750 - chr2L_4_18215001 chr2L_18215001 RAL-359 456 chr2L 18235051 18235076 chr2L 18235202 18235228 4 149 4.5 3.5 4.0 0.8 177 chr2L 18235051 intron CG42750 - chr2L 18235140 intron CG42750 - chr2L 18235228 intron CG42750 - chr2L_4_18235001 chr2L_18235001 RAL-359 457 chr2L 18235079 18235097 chr2L 18235194 18235196 9 130 2.0 3.5 2.8 2.4 117 chr2L 18235079 intron CG42750 - chr2L 18235138 intron CG42750 - chr2L 18235196 intron CG42750 - chr2L_9_18235001 chr2L_18235001 RAL-359 458 chr2L 18264041 18264089 chr2L 18264138 18264186 8 97 5.5 1.5 3.5 1.8 145 chr2L 18264041 intron CG42750 - chr2L 18264114 intron CG42750 - chr2L 18264186 intron CG42750 - chr2L_8_18260001 chr2L_18260001 RAL-359 459 chr2L 18274029 18274071 chr2L 18274129 18274177 10 105 5.5 2.5 4.0 2.0 148 chr2L 18274029 intron CG42750 - chr2L 18274103 intron CG42750 - chr2L 18274177 intron CG42750 - chr2L_10_18270001 chr2L_18270001 RAL-359 460 chr2L 18281760 18281786 chr2L 18281875 18281901 6 110 4.0 3.5 3.8 1.2 141 chr2L 18281760 intergenic not near genes chr2L 18281830 intergenic not near genes chr2L 18281901 intergenic not near genes chr2L_6_18280001 chr2L_18280001 RAL-359 461 chr2L 18291515 18291538 chr2L 18291633 18291656 7 118 4.0 0.0 2.0 2.3 141 chr2L 18291515 intergenic CG43362 -,CR44693 +,CR44696 - chr2L 18291586 intergenic CR44693 +,CG43362 -,CR44696 - chr2L 18291656 intergenic CR44693 +,CG43362 -,CR44696 - chr2L_7_18290001 chr2L_18290001 RAL-359 462 chr2L 18344899 18344940 chr2L 18345033 18345074 9 131 2.0 2.5 2.2 2.8 175 chr2L 18344899 intron Fas3 + chr2L 18344986 intron Fas3 + chr2L 18345074 intron Fas3 + chr2L_9_18340001 chr2L_18340001 RAL-359 463 chr2L 18398401 18398434 chr2L 18398499 18398525 7 97 4.0 5.5 4.8 1.2 124 chr2L 18398401 intergenic not near genes chr2L 18398463 intergenic not near genes chr2L 18398525 intergenic not near genes chr2L_7_18395001 chr2L_18395001 RAL-359 464 chr2L 18408017 18408026 chr2L 18412805 18412830 Doc 5 4801 8.0 0.0 4.0 1.0 4813 chr2L 18408017 intergenic not near genes chr2L 18410424 intergenic not near genes chr2L 18412830 intergenic not near genes chr2L_5_18410001 chr2L_18410001 RAL-359 465 chr2L 18423845 18423870 chr2L 18423956 18423981 6 111 3.0 3.5 3.2 1.4 136 chr2L 18423845 intergenic not near genes chr2L 18423913 intergenic not near genes chr2L 18423981 intergenic not near genes chr2L_6_18420001 chr2L_18420001 RAL-359 466 chr2L 18440303 18440355 chr2L 18440429 18440481 13 125 2.0 2.0 2.0 4.3 178 chr2L 18440303 intergenic not near genes chr2L 18440392 intergenic not near genes chr2L 18440481 intergenic not near genes chr2L_13_18440001 chr2L_18440001 RAL-359 467 chr2L 18496690 18496718 chr2L 18496792 18496820 7 102 0.0 6.0 3.0 1.8 130 chr2L 18496690 intron kon - chr2L 18496755 intron kon - chr2L 18496820 intron kon - chr2L_7_18495001 chr2L_18495001 RAL-359 468 chr2L 18518076 18518120 chr2L 18518194 18518238 13 118 4.0 1.0 2.5 3.7 162 chr2L 18518076 5` UTR CG10211 + chr2L 18518157 5` UTR CG10211 + chr2L 18518238 intron CG10211 + chr2L_13_18515001 chr2L_18515001 RAL-359 469 chr2L 18538549 18538599 chr2L 18538651 18538700 12 101 0.0 3.5 1.8 4.3 151 chr2L 18538549 intron Pde11 - chr2L 18538624 intron Pde11 - chr2L 18538700 intron Pde11 - chr2L_12_18535001 chr2L_18535001 RAL-359 470 chr2L 18621026 18621074 chr2L 18621135 18621183 14 109 3.5 3.5 3.5 3.1 157 chr2L 18621026 intron MESR3 + chr2L 18621104 intron MESR3 + chr2L 18621183 intron MESR3 + chr2L_14_18620001 chr2L_18620001 RAL-359 471 chr2L 18658784 18658816 chr2L 18659091 18659126 6 308 1.0 7.5 4.2 1.2 342 chr2L 18658784 intron MESR3 + chr2L 18658955 intron MESR3 + chr2L 18659126 intron MESR3 + chr2L_6_18655001 chr2L_18655001 RAL-359 472 chr2L 18695516 18695553 chr2L 18695619 18695644 5 100 5.0 2.0 3.5 1.1 128 chr2L 18695516 5` UTR CG10383 - chr2L 18695580 5` UTR CG10383 - chr2L 18695644 intergenic CG10338 +,CG10383 - chr2L_5_18695001 chr2L_18695001 RAL-359 473 chr2L 18790289 18790306 chr2L 18791089 18791106 6 802 14.0 41.0 27.5 0.2 817 chr2L 18790289 intron ham - chr2L 18790698 intron ham - chr2L 18791106 intron ham - chr2L_6_18790001 chr2L_18790001 RAL-359 474 chr2L 18790287 18790338 chr2L 18791113 18791138 7 809 25.0 37.5 31.2 0.2 851 chr2L 18790287 intron ham - chr2L 18790712 intron ham - chr2L 18791138 intron ham - chr2L_7_18790001 chr2L_18790001 RAL-359 475 chr2L 18811412 18811437 chr2L 18811514 18811539 8 102 1.5 0.0 0.8 4.4 127 chr2L 18811412 intergenic CG10570 -,CG42502 - chr2L 18811476 intergenic CG10570 -,CG42502 - chr2L 18811539 intergenic not near genes chr2L_8_18810001 chr2L_18810001 RAL-359 476 chr2L 18812552 18812590 chr2L 18812821 18812872 8 279 0.0 4.5 2.2 2.5 320 chr2L 18812552 intergenic CG17325 +,CG42305 + chr2L 18812712 5` UTR,5` UTR CG17325 +,CG42305 + chr2L 18812872 5` UTR,5` UTR CG17325 +,CG42305 + chr2L_8_18810001 chr2L_18810001 RAL-359 477 chr2L 19070256 19070292 chr2L 19070368 19070384 7 96 4.0 3.5 3.8 1.5 128 chr2L 19070256 intergenic CG10702 - chr2L 19070320 intergenic CG10702 - chr2L 19070384 intergenic not near genes chr2L_7_19070001 chr2L_19070001 RAL-359 478 chr2L 19102345 19102380 chr2L 19102431 19102476 13 93 3.5 2.0 2.8 3.4 131 chr2L 19102345 intron,5` UTR,exon Lim3 -,CG17344 +,CG43731 + chr2L 19102410 intron,exon,3` UTR Lim3 -,CG17344 +,CG43731 + chr2L 19102476 intron,exon,3` UTR Lim3 -,CG17344 +,CG43731 + chr2L_13_19100001 chr2L_19100001 RAL-359 479 chr2L 19147374 19147402 chr2L 19154404 19154457 297 9 7044 1.5 1.5 1.5 3.6 7083 chr2L 19147374 intron brat + chr2L 19150916 intron brat + chr2L 19154457 intron brat + chr2L_9_19150001 chr2L_19150001 RAL-359 480 chr2L 19159022 19159070 chr2L 19159164 19159207 9 141 3.5 3.5 3.5 2.0 185 chr2L 19159022 intron,3` UTR brat +,CR44977 - chr2L 19159114 intron,3` UTR brat +,CR44977 - chr2L 19159207 intron,3` UTR brat +,CR44977 - chr2L_9_19155001 chr2L_19155001 RAL-359 481 chr2L 19189947 19190003 chr2L 19190121 19190176 15 174 1.0 1.0 1.0 7.5 229 chr2L 19189947 intergenic pigeon +,drl + chr2L 19190062 intergenic pigeon +,drl + chr2L 19190176 intergenic drl +,pigeon + chr2L_15_19190001 chr2L_19190001 RAL-359 482 chr2L 19237290 19237337 chr2L 19237409 19237450 11 115 1.5 0.5 1.0 5.5 160 chr2L 19237290 intergenic not near genes chr2L 19237370 intergenic not near genes chr2L 19237450 intergenic not near genes chr2L_11_19235001 chr2L_19235001 RAL-359 483 chr2L 19246822 19246839 chr2L 19246920 19246926 5 96 6.5 5.5 6.0 0.7 104 chr2L 19246822 intergenic not near genes chr2L 19246874 intergenic not near genes chr2L 19246926 intergenic not near genes chr2L_5_19245001 chr2L_19245001 RAL-359 484 chr2L 19254935 19254947 chr2L 19255043 19255061 4 114 1.5 3.0 2.2 1.2 126 chr2L 19254935 intergenic not near genes chr2L 19254998 intergenic not near genes chr2L 19255061 intergenic not near genes chr2L_4_19250001 chr2L_19250001 RAL-359 485 chr2L 19266152 19266205 chr2L 19266339 19266392 14 181 2.5 1.0 1.8 5.0 240 chr2L 19266152 intergenic not near genes chr2L 19266272 intergenic not near genes chr2L 19266392 intergenic not near genes chr2L_14_19265001 chr2L_19265001 RAL-359 486 chr2L 19345014 19345044 chr2L 19357243 19357271 blood 4 12228 1.5 5.5 3.5 0.9 12257 chr2L 19345014 intron dnt - chr2L 19351142 intron dnt - chr2L 19357271 intron dnt - chr2L_4_19350001 chr2L_19350001 RAL-359 487 chr2L 19357529 19357540 chr2L 19357639 19357650 4 110 11.5 6.5 9.0 0.4 121 chr2L 19357529 intron dnt - chr2L 19357590 intron dnt - chr2L 19357650 intron dnt - chr2L_4_19355001 chr2L_19355001 RAL-359 488 chr2L 19357541 19357569 chr2L 19357636 19357679 13 107 6.0 5.5 5.8 1.9 138 chr2L 19357541 intron dnt - chr2L 19357610 intron dnt - chr2L 19357679 intron dnt - chr2L_13_19355001 chr2L_19355001 RAL-359 489 chr2L 19371903 19371942 chr2L 19372005 19372041 13 102 4.5 5.0 4.8 2.2 138 chr2L 19371903 intron CG17349 + chr2L 19371972 intron CG17349 + chr2L 19372041 intron CG17349 + chr2L_13_19370001 chr2L_19370001 RAL-359 490 chr2L 19374475 19374520 chr2L 19374604 19374649 7 126 3.5 2.5 3.0 1.8 174 chr2L 19374475 intergenic not near genes chr2L 19374562 intergenic not near genes chr2L 19374649 intergenic not near genes chr2L_7_19370001 chr2L_19370001 RAL-359 491 chr2L 19405603 19405635 chr2L 19405707 19405744 7 109 3.5 2.5 3.0 1.8 141 chr2L 19405603 intron Pax - chr2L 19405674 intron Pax - chr2L 19405744 intron Pax - chr2L_7_19405001 chr2L_19405001 RAL-359 492 chr2L 19441052 19441089 chr2L 19441149 19441181 9 94 4.0 4.0 4.0 1.8 129 chr2L 19441052 intron CG10237 - chr2L 19441116 intron CG10237 - chr2L 19441181 5` UTR CG10237 - chr2L_9_19440001 chr2L_19440001 RAL-359 493 chr2L 19597252 19597300 chr2L 19597505 19597548 6 250 2.0 6.0 4.0 1.2 296 chr2L 19597252 intron Lar + chr2L 19597400 intron Lar + chr2L 19597548 intron Lar + chr2L_6_19595001 chr2L_19595001 RAL-359 494 chr2L 19620098 19620128 chr2L 19621082 19621136 jockey 4 995 2.5 4.0 3.2 1.0 1038 chr2L 19620098 intron Lar + chr2L 19620617 intron Lar + chr2L 19621136 intron Lar + chr2L_4_19620001 chr2L_19620001 RAL-359 495 chr2L 19638516 19638566 chr2L 19638623 19638673 20 107 5.5 4.0 4.8 3.4 157 chr2L 19638516 intron Lar + chr2L 19638594 intron Lar + chr2L 19638673 intron Lar + chr2L_20_19635001 chr2L_19635001 RAL-359 496 chr2L 19652563 19652597 chr2L 19674006 19674051 opus 12 21452 3.5 3.5 3.5 2.7 21488 chr2L 19652563 intron Lar + chr2L 19663307 intron Lar + chr2L 19674051 intron Lar + chr2L_12_19660001 chr2L_19660001 RAL-359 497 chr2L 19696400 19696417 chr2L 19696510 19696527 5 109 0.0 7.0 3.5 1.1 127 chr2L 19696400 intron Lar + chr2L 19696464 intron Lar + chr2L 19696527 intron Lar + chr2L_5_19695001 chr2L_19695001 RAL-359 498 chr2L 19703520 19703564 chr2L 19712675 19712720 roo 16 9156 6.5 5.5 6.0 2.3 9200 chr2L 19703520 intron Lar + chr2L 19708120 intron Lar + chr2L 19712720 intron Lar + chr2L_16_19705001 chr2L_19705001 RAL-359 499 chr2L 19737349 19737382 chr2L 19740838 19740866 1360 4 3477 2.0 4.5 3.2 1.0 3517 chr2L 19737349 intergenic Nf-YB + chr2L 19739108 intergenic not near genes chr2L 19740866 intergenic not near genes chr2L_4_19735001 chr2L_19735001 RAL-359 500 chr2L 19762795 19762838 chr2L 19763057 19763100 pogo 8 262 1.5 5.0 3.2 1.9 305 chr2L 19762795 5` UTR fbp - chr2L 19762948 intron fbp - chr2L 19763100 intron fbp - chr2L_8_19760001 chr2L_19760001 RAL-359 501 chr2L 19776640 19776658 chr2L 19776740 19776757 6 96 9.0 2.5 5.8 0.9 117 chr2L 19776640 3` UTR CdGAPr - chr2L 19776698 3` UTR CdGAPr - chr2L 19776757 3` UTR CdGAPr - chr2L_6_19775001 chr2L_19775001 RAL-359 502 chr2L 19824403 19824429 chr2L 19824506 19824532 7 103 3.0 4.5 3.8 1.5 129 chr2L 19824403 intron sick + chr2L 19824468 intron sick + chr2L 19824532 intron sick + chr2L_7_19820001 chr2L_19820001 RAL-359 503 chr2L 19837268 19837299 chr2L 19837368 19837399 12 99 1.5 5.0 3.2 2.9 131 chr2L 19837268 intron sick + chr2L 19837334 intron sick + chr2L 19837399 intron sick + chr2L_12_19835001 chr2L_19835001 RAL-359 504 chr2L 19871550 19871574 chr2L 19871629 19871681 7 103 0.0 3.0 1.5 2.8 131 chr2L 19871550 intron sick + chr2L 19871616 intron sick + chr2L 19871681 intron sick + chr2L_7_19870001 chr2L_19870001 RAL-359 505 chr2L 19974236 19974276 chr2L 19977818 19977863 11 3583 32.0 42.5 37.2 0.3 3627 chr2L 19974236 intron CG43861 - chr2L 19976050 intron CG43861 - chr2L 19977863 intron CG43861 - chr2L_11_19975001 chr2L_19975001 RAL-359 506 chr2L 20005853 20005902 chr2L 20010949 20010998 flea 15 5095 2.5 5.0 3.8 3.1 5145 chr2L 20005853 intron CG43861 - chr2L 20008426 intron CG43861 - chr2L 20010998 intron CG43861 - chr2L_15_20005001 chr2L_20005001 RAL-359 507 chr2L 20044546 20044586 chr2L 20044760 20044800 10 214 2.5 2.0 2.2 3.1 254 chr2L 20044546 intron sNPF + chr2L 20044673 intron sNPF + chr2L 20044800 intron sNPF + chr2L_10_20040001 chr2L_20040001 RAL-359 508 chr2L 20069507 20069552 chr2L 20069605 20069652 10 92 4.5 4.0 4.2 1.9 145 chr2L 20069507 exon bwa + chr2L 20069580 intron bwa + chr2L 20069652 intron bwa + chr2L_10_20065001 chr2L_20065001 RAL-359 509 chr2L 20079498 20079548 chr2L 20079639 20079689 16 140 3.5 0.0 1.8 5.7 191 chr2L 20079498 intron,intron neb +,fok - chr2L 20079594 intron,intron neb +,fok - chr2L 20079689 intron,intron neb +,fok - chr2L_16_20075001 chr2L_20075001 RAL-359 510 chr2L 20269591 20269633 chr2L 20269835 20269876 9 240 1.5 4.0 2.8 2.4 285 chr2L 20269591 intergenic not near genes chr2L 20269734 intergenic not near genes chr2L 20269876 intergenic not near genes chr2L_9_20265001 chr2L_20265001 RAL-359 511 chr2L 20271249 20271253 chr2L 20271352 20271356 4 102 7.5 5.0 6.2 0.6 107 chr2L 20271249 intergenic not near genes chr2L 20271302 intergenic not near genes chr2L 20271356 intergenic not near genes chr2L_4_20270001 chr2L_20270001 RAL-359 512 chr2L 20271254 20271268 chr2L 20271346 20271371 6 99 7.0 5.0 6.0 0.9 117 chr2L 20271254 intergenic not near genes chr2L 20271312 intergenic not near genes chr2L 20271371 intergenic not near genes chr2L_6_20270001 chr2L_20270001 RAL-359 513 chr2L 20272097 20272141 chr2L 20282828 20282872 copia 8 10728 4.5 5.5 5.0 1.3 10775 chr2L 20272097 intergenic not near genes chr2L 20277484 intergenic not near genes chr2L 20282872 intergenic not near genes chr2L_8_20275001 chr2L_20275001 RAL-359 514 chr2L 20296499 20296524 chr2L 20296600 20296625 5 101 2.5 3.5 3.0 1.2 126 chr2L 20296499 intergenic CR43414 - chr2L 20296562 intergenic CR43414 - chr2L 20296625 intergenic CR43414 - chr2L_5_20295001 chr2L_20295001 RAL-359 515 chr2L 20298806 20298853 chr2L 20298909 20298936 12 100 3.0 6.0 4.5 2.2 130 chr2L 20298806 intergenic not near genes chr2L 20298871 intergenic not near genes chr2L 20298936 intergenic not near genes chr2L_12_20295001 chr2L_20295001 RAL-359 516 chr2L 20302977 20303005 chr2L 20303087 20303115 6 110 3.5 0.0 1.8 2.1 138 chr2L 20302977 intergenic not near genes chr2L 20303046 intergenic not near genes chr2L 20303115 intergenic not near genes chr2L_6_20300001 chr2L_20300001 RAL-359 517 chr2L 20310875 20310885 chr2L 20310975 20310985 5 100 2.5 6.0 4.2 1.0 110 chr2L 20310875 intergenic spir + chr2L 20310930 intergenic spir + chr2L 20310985 intergenic spir + chr2L_5_20310001 chr2L_20310001 RAL-359 518 chr2L 20312559 20312567 chr2L 20312664 20312672 4 105 2.5 5.0 3.8 0.8 113 chr2L 20312559 intron spir + chr2L 20312616 intron spir + chr2L 20312672 intron spir + chr2L_4_20310001 chr2L_20310001 RAL-359 519 chr2L 20372208 20372245 chr2L 20372469 20372506 pogo 12 261 0.5 2.5 1.5 4.8 298 chr2L 20372208 intergenic Ugt37a1 - chr2L 20372357 intergenic Ugt37a1 - chr2L 20372506 exon Ugt37a1 - chr2L_12_20370001 chr2L_20370001 RAL-359 520 chr2L 20383435 20383466 chr2L 20383537 20383578 6 106 2.0 3.0 2.5 1.7 143 chr2L 20383435 intergenic not near genes chr2L 20383506 intergenic not near genes chr2L 20383578 intergenic not near genes chr2L_6_20380001 chr2L_20380001 RAL-359 521 chr2L 20497446 20497477 chr2L 20497634 20497672 9 184 5.0 2.0 3.5 2.0 226 chr2L 20497446 intergenic not near genes chr2L 20497559 intergenic not near genes chr2L 20497672 intergenic not near genes chr2L_9_20495001 chr2L_20495001 RAL-359 522 chr2L 20498678 20498707 chr2L 20498797 20498826 7 119 4.5 8.0 6.2 1.0 148 chr2L 20498678 intergenic not near genes chr2L 20498752 intergenic not near genes chr2L 20498826 intergenic not near genes chr2L_7_20495001 chr2L_20495001 RAL-359 523 chr2L 20568656 20568680 chr2L 20569066 20569087 X-element 10 410 2.0 3.5 2.8 2.6 431 chr2L 20568656 intron CR45347 + chr2L 20568872 intron CR45347 + chr2L 20569087 intron CR45347 + chr2L_10_20565001 chr2L_20565001 RAL-359 524 chr2L 20576202 20576239 chr2L 20583690 20583727 blood 7 7486 5.5 5.0 5.2 1.1 7525 chr2L 20576202 intergenic CR45347 + chr2L 20579964 intergenic not near genes chr2L 20583727 3` UTR CR44909 - chr2L_7_20575001 chr2L_20575001 RAL-359 525 chr2L 20601779 20601804 chr2L 20601877 20601902 4 98 3.0 3.5 3.2 1.0 123 chr2L 20601779 intron CR44909 - chr2L 20601840 intron CR44909 - chr2L 20601902 intron CR44909 - chr2L_4_20600001 chr2L_20600001 RAL-359 526 chr2L 20602715 20602741 chr2L 20602823 20602849 4 108 1.0 2.5 1.8 1.4 134 chr2L 20602715 intron CR44909 - chr2L 20602782 intron CR44909 - chr2L 20602849 intron CR44909 - chr2L_4_20600001 chr2L_20600001 RAL-359 527 chr2L 20643327 20643339 chr2L 20643479 20643491 4 152 2.0 4.5 3.2 1.0 164 chr2L 20643327 intergenic phr6-4 -,CG17470 - chr2L 20643409 3` UTR phr6-4 - chr2L 20643491 3` UTR phr6-4 - chr2L_4_20640001 chr2L_20640001 RAL-359 528 chr2L 20801670 20801691 chr2L 20801759 20801782 5 90 2.5 0.0 1.2 2.3 112 chr2L 20801670 intron CG9328 + chr2L 20801726 intron CG9328 + chr2L 20801782 intron CG9328 + chr2L_5_20800001 chr2L_20800001 RAL-359 529 chr2L 20826525 20826542 chr2L 20826625 20826642 5 100 1.5 7.0 4.2 1.0 117 chr2L 20826525 intron CG9331 + chr2L 20826584 intron CG9331 + chr2L 20826642 exon CG9331 + chr2L_5_20825001 chr2L_20825001 RAL-359 530 chr2L 20835795 20835841 chr2L 20836532 20836578 Quasimodo 12 737 3.5 1.5 2.5 3.4 783 chr2L 20835795 5` UTR Oseg5 - chr2L 20836186 intergenic Oseg5 -,Spn38F - chr2L 20836578 intergenic Spn38F - chr2L_12_20835001 chr2L_20835001 RAL-359 531 chr2L 20840041 20840049 chr2L 20840246 20840281 4 222 4.5 5.0 4.8 0.7 240 chr2L 20840041 intergenic not near genes chr2L 20840161 intergenic not near genes chr2L 20840281 intergenic CG31676 + chr2L_4_20840001 chr2L_20840001 RAL-359 532 chr2L 20846739 20846793 chr2L 20846843 20846890 8 102 2.5 3.5 3.0 2.0 151 chr2L 20846739 intron CG31676 + chr2L 20846814 intron CG31676 + chr2L 20846890 intron CG31676 + chr2L_8_20845001 chr2L_20845001 RAL-359 533 chr2L 20891524 20891543 chr2L 20896645 20896664 jockey 6 5121 1.5 4.0 2.8 1.6 5140 chr2L 20891524 intron,intron CG43739 -,sky - chr2L 20894094 intron,intron CG43739 -,sky - chr2L 20896664 intron,intron CG43739 -,sky - chr2L_6_20890001 chr2L_20890001 RAL-359 534 chr2L 20976638 20976679 chr2L 20981473 20981483 X-element 4 4827 3.0 5.5 4.2 0.8 4845 chr2L 20976638 intron CG42238 - chr2L 20979060 intron CG42238 - chr2L 20981483 intron CG42238 - chr2L_4_20975001 chr2L_20975001 RAL-359 535 chr2L 20991034 20991066 chr2L 20991132 20991164 10 97 1.5 4.0 2.8 2.6 130 chr2L 20991034 intron CG42238 - chr2L 20991099 intron CG42238 - chr2L 20991164 intron CG42238 - chr2L_10_20990001 chr2L_20990001 RAL-359 536 chr2L 21001510 21001543 chr2L 21001606 21001634 6 92 7.0 2.5 4.8 1.0 124 chr2L 21001510 intron CG42238 - chr2L 21001572 intron CG42238 - chr2L 21001634 intron CG42238 - chr2L_6_21000001 chr2L_21000001 RAL-359 537 chr2L 21020263 21020297 chr2L 21023952 21023994 NOF 9 3692 1.0 3.5 2.2 2.8 3731 chr2L 21020263 intron CG42238 - chr2L 21022128 intron CG42238 - chr2L 21023994 intron CG42238 - chr2L_9_21020001 chr2L_21020001 RAL-359 538 chr2L 21041121 21041137 chr2L 21049402 21049418 Tirant 5 8281 8.5 3.5 6.0 0.7 8297 chr2L 21041121 intron CG42238 - chr2L 21045270 intron CG42238 - chr2L 21049418 intron CG42238 - chr2L_5_21045001 chr2L_21045001 RAL-359 539 chr2L 21041141 21041165 chr2L 21049395 21049444 Tirant 6 8272 5.0 3.0 4.0 1.2 8303 chr2L 21041141 intron CG42238 - chr2L 21045292 intron CG42238 - chr2L 21049444 intron CG42238 - chr2L_6_21045001 chr2L_21045001 RAL-359 540 chr2L 21119287 21119313 chr2L 21119381 21119417 9 102 3.5 9.0 6.2 1.2 130 chr2L 21119287 intron Nhe2 + chr2L 21119352 intron Nhe2 + chr2L 21119417 intron Nhe2 + chr2L_9_21115001 chr2L_21115001 RAL-359 541 chr2L 21199221 21199261 chr2L 21199316 21199355 12 95 4.5 3.5 4.0 2.4 134 chr2L 21199221 intergenic CG31624 -,Ret - chr2L 21199288 3` UTR CG31624 - chr2L 21199355 3` UTR CG31624 - chr2L_12_21195001 chr2L_21195001 RAL-359 542 chr2L 21251445 21251486 chr2L 21251541 21251582 15 96 3.5 2.5 3.0 3.8 137 chr2L 21251445 intron Hr39 + chr2L 21251514 intron Hr39 + chr2L 21251582 intron Hr39 + chr2L_15_21250001 chr2L_21250001 RAL-359 543 chr2L 21284035 21284085 chr2L 21284527 21284578 10 492 5.0 2.5 3.8 2.1 543 chr2L 21284035 intergenic not near genes chr2L 21284306 intergenic not near genes chr2L 21284578 intergenic not near genes chr2L_10_21280001 chr2L_21280001 RAL-359 544 chr2L 21285622 21285667 chr2L 21285738 21285785 14 117 4.0 8.0 6.0 2.0 163 chr2L 21285622 intergenic Mio - chr2L 21285704 intergenic Mio - chr2L 21285785 intergenic Mio - chr2L_14_21285001 chr2L_21285001 RAL-359 545 chr2L 21286587 21286626 chr2L 21286685 21286724 7 98 4.0 4.5 4.2 1.3 137 chr2L 21286587 exon Mio - chr2L 21286656 intron Mio - chr2L 21286724 intron Mio - chr2L_7_21285001 chr2L_21285001 RAL-359 546 chr2L 21307449 21307488 chr2L 21307551 21307590 8 102 4.5 3.0 3.8 1.7 141 chr2L 21307449 intron Mio - chr2L 21307520 intron Mio - chr2L 21307590 intron Mio - chr2L_8_21305001 chr2L_21305001 RAL-359 547 chr2L 21347543 21347574 chr2L 21355035 21355066 blood 6 7492 3.0 3.0 3.0 1.5 7523 chr2L 21347543 intron Tsp39D + chr2L 21351304 intron Tsp39D + chr2L 21355066 intron Tsp39D + chr2L_6_21350001 chr2L_21350001 RAL-359 548 chr2L 21396597 21396611 chr2L 21396852 21396860 4 254 4.0 5.0 4.5 0.7 263 chr2L 21396597 intergenic not near genes chr2L 21396728 intergenic not near genes chr2L 21396860 intergenic not near genes chr2L_4_21395001 chr2L_21395001 RAL-359 549 chr2L 21596128 21596169 chr2L 21596338 21596379 4 209 4.5 0.5 2.5 1.1 251 chr2L 21596128 intergenic not near genes chr2L 21596254 intergenic not near genes chr2L 21596379 intergenic not near genes chr2L_4_21595001 chr2L_21595001 RAL-359 550 chr2L 21597023 21597063 chr2L 21604787 21604813 roo 16 7761 3.5 3.5 3.5 3.6 7790 chr2L 21597023 intergenic not near genes chr2L 21600918 intergenic not near genes chr2L 21604813 intergenic not near genes chr2L_16_21600001 chr2L_21600001 RAL-359 551 chr2L 21634058 21634081 chr2L 21634242 21634265 8 184 3.5 2.0 2.8 2.1 207 chr2L 21634058 intron Ac3 + chr2L 21634162 intron Ac3 + chr2L 21634265 intron Ac3 + chr2L_8_21630001 chr2L_21630001 RAL-359 552 chr2L 21653180 21653212 chr2L 21656499 21656536 invader4 8 3323 2.5 5.0 3.8 1.7 3356 chr2L 21653180 intergenic not near genes chr2L 21654858 intergenic not near genes chr2L 21656536 intergenic not near genes chr2L_8_21650001 chr2L_21650001 RAL-359 553 chr2L 21667186 21667216 chr2L 21667536 21667546 6 344 2.0 3.5 2.8 1.6 360 chr2L 21667186 intron CG2225 - chr2L 21667366 intron CG2225 - chr2L 21667546 intron CG2225 - chr2L_6_21665001 chr2L_21665001 RAL-359 554 chr2L 21691808 21691857 chr2L 21698298 21698329 Burdock 9 6486 1.5 1.0 1.2 4.1 6521 chr2L 21691808 intron CG31619 + chr2L 21695068 intron CG31619 + chr2L 21698329 intron CG31619 + chr2L_9_21695001 chr2L_21695001 RAL-359 555 chr2L 21747709 21747737 chr2L 21747960 21747988 5 251 1.0 2.0 1.5 2.0 279 chr2L 21747709 intron step - chr2L 21747848 intron step - chr2L 21747988 intron step - chr2L_5_21745001 chr2L_21745001 RAL-359 556 chr2L 21750081 21750090 chr2L 21750421 21750430 4 340 7.0 2.0 4.5 0.7 349 chr2L 21750081 intron step - chr2L 21750256 intron step - chr2L 21750430 intron step - chr2L_4_21750001 chr2L_21750001 RAL-359 557 chr2L 21754650 21754690 chr2L 21754750 21754790 16 100 4.5 6.0 5.2 2.6 140 chr2L 21754650 intron step - chr2L 21754720 intron step - chr2L 21754790 intron step - chr2L_16_21750001 chr2L_21750001 RAL-359 558 chr2L 21802137 21802166 chr2L 21802242 21802253 7 102 6.5 3.0 4.8 1.2 116 chr2L 21802137 intergenic not near genes chr2L 21802195 intergenic not near genes chr2L 21802253 intergenic not near genes chr2L_7_21800001 chr2L_21800001 RAL-359 559 chr2L 21855462 21855504 chr2L 21855568 21855611 7 106 4.0 3.5 3.8 1.5 149 chr2L 21855462 intron CR44917 + chr2L 21855536 intron CR44917 + chr2L 21855611 intron CR44917 + chr2L_7_21855001 chr2L_21855001 RAL-359 560 chr2L 21954208 21954251 chr2L 21954308 21954351 9 100 4.5 4.0 4.2 1.7 143 chr2L 21954208 intergenic not near genes chr2L 21954280 intergenic not near genes chr2L 21954351 intergenic not near genes chr2L_9_21950001 chr2L_21950001 RAL-359 561 chr2L 21981674 21981715 chr2L 21990859 21990868 roo 5 9171 2.5 7.5 5.0 0.8 9194 chr2L 21981674 exon CG2528 - chr2L 21986271 intron CG2528 - chr2L 21990868 exon CG2528 - chr2L_5_21985001 chr2L_21985001 RAL-359 562 chr2L 21996922 21996969 chr2L 21997023 21997069 10 99 3.0 5.0 4.0 2.0 147 chr2L 21996922 intergenic not near genes chr2L 21996996 intergenic not near genes chr2L 21997069 intergenic not near genes chr2L_10_21995001 chr2L_21995001 RAL-359 563 chr2L 22001626 22001674 chr2L 22001722 22001766 10 96 2.0 4.0 3.0 2.5 140 chr2L 22001626 intergenic not near genes chr2L 22001696 intergenic not near genes chr2L 22001766 intergenic not near genes chr2L_10_22000001 chr2L_22000001 RAL-359 564 chr2L 22013236 22013279 chr2L 22013334 22013377 9 98 5.5 2.5 4.0 1.8 141 chr2L 22013236 intergenic not near genes chr2L 22013306 intergenic not near genes chr2L 22013377 intergenic not near genes chr2L_9_22010001 chr2L_22010001 RAL-359 565 chr2L 22165699 22165744 chr2L 22165800 22165846 8 102 2.5 0.5 1.5 3.2 147 chr2L 22165699 3` UTR CG42748 + chr2L 22165772 3` UTR,3` UTR CG42748 +,Clamp - chr2L 22165846 3` UTR,3` UTR CG42748 +,Clamp - chr2L_8_22165001 chr2L_22165001 RAL-359 566 chr2L 22178034 22178050 chr2L 22178139 22178150 5 103 6.5 4.0 5.2 0.8 116 chr2L 22178034 intron CG3635 + chr2L 22178092 intron CG3635 + chr2L 22178150 intron CG3635 + chr2L_5_22175001 chr2L_22175001 RAL-359 567 chr2L 22187429 22187438 chr2L 22187552 22187566 4 128 8.0 5.0 6.5 0.5 137 chr2L 22187429 intergenic not near genes chr2L 22187498 intergenic not near genes chr2L 22187566 intergenic not near genes chr2L_4_22185001 chr2L_22185001 RAL-359 568 chr2L 22192004 22192058 chr2L 22192113 22192131 16 104 3.0 4.0 3.5 3.6 127 chr2L 22192004 intron Ir40a - chr2L 22192068 intron Ir40a - chr2L 22192131 intron Ir40a - chr2L_16_22190001 chr2L_22190001 RAL-359 569 chr2L 22198998 22199049 chr2L 22199107 22199141 9 106 1.0 2.5 1.8 3.2 143 chr2L 22198998 intron Ir40a - chr2L 22199070 intron Ir40a - chr2L 22199141 intron Ir40a - chr2L_9_22195001 chr2L_22195001 RAL-359 570 chr2L 22212129 22212161 chr2L 22212696 22212728 7 567 1.0 5.0 3.0 1.8 599 chr2L 22212129 intron Ir40a - chr2L 22212428 intron Ir40a - chr2L 22212728 exon Ir40a - chr2L_7_22210001 chr2L_22210001 RAL-359 571 chr2L 22214524 22214549 chr2L 22214636 22214661 4 112 3.5 6.5 5.0 0.7 137 chr2L 22214524 intergenic Ir40a - chr2L 22214592 intergenic Ir40a - chr2L 22214661 intergenic Ir40a - chr2L_4_22210001 chr2L_22210001 RAL-359 572 chr2L 22258597 22258632 chr2L 22260742 22260777 G6 5 2138 3.0 3.5 3.2 1.2 2180 chr2L 22258597 intergenic Tif-IA + chr2L 22259687 intergenic not near genes chr2L 22260777 intergenic not near genes chr2L_5_22255001 chr2L_22255001 RAL-359 573 chr2L 22276655 22276688 chr2L 22276757 22276789 6 103 0.5 3.5 2.0 2.0 134 chr2L 22276655 intergenic not near genes chr2L 22276722 intergenic not near genes chr2L 22276789 intergenic not near genes chr2L_6_22275001 chr2L_22275001 RAL-359 574 chr2L 22545966 22546003 chr2L 22546082 22546108 9 114 3.5 7.0 5.2 1.5 142 chr2L 22545966 intron CG17490 + chr2L 22546037 intron CG17490 + chr2L 22546108 intron CG17490 + chr2L_9_22545001 chr2L_22545001 RAL-359 575 chr2L 22548922 22548942 chr2L 22550159 22550187 1360 12 1244 0.5 13.5 7.0 1.5 1265 chr2L 22548922 intergenic CG17490 + chr2L 22549554 intergenic not near genes chr2L 22550187 intergenic CG17493 + chr2L_12_22545001 chr2L_22545001 RAL-359 576 chr2L 22581951 22581989 chr2L 22583760 22583797 S-element 9 1809 5.0 3.5 4.2 1.7 1846 chr2L 22581951 intron CG17494 + chr2L 22582874 intron CG17494 + chr2L 22583797 intron CG17494 + chr2L_9_22580001 chr2L_22580001 RAL-359 577 chr2L 22676122 22676147 chr2L 22676380 22676405 4 258 2.5 4.0 3.2 1.0 283 chr2L 22676122 intron CG40006 - chr2L 22676264 intron CG40006 - chr2L 22676405 intron CG40006 - chr2L_4_22675001 chr2L_22675001 RAL-359 578 chr2L 22679802 22679820 chr2L 22684583 22684612 F-element 8 4790 3.0 7.0 5.0 1.3 4810 chr2L 22679802 intron CG40006 - chr2L 22682207 intron CG40006 - chr2L 22684612 intron CG40006 - chr2L_8_22680001 chr2L_22680001 RAL-359 579 chr2L 22693900 22693941 chr2L 22694007 22694040 6 104 0.5 5.0 2.8 1.6 140 chr2L 22693900 intron CG40006 - chr2L 22693970 intron CG40006 - chr2L 22694040 intron CG40006 - chr2L_6_22690001 chr2L_22690001 RAL-359 580 chr2L 22776403 22776452 chr2L 22778212 22778261 S-element 11 1809 3.5 5.5 4.5 2.0 1858 chr2L 22776403 intergenic not near genes chr2L 22777332 intergenic not near genes chr2L 22778261 intergenic not near genes chr2L_11_22775001 chr2L_22775001 RAL-359 581 chr2R 529321 529349 chr2R 537955 537994 Max-element 5 8642 4.5 4.5 4.5 0.9 8673 chr2R 529321 intron CG40378 + chr2R 533658 intron CG40378 + chr2R 537994 intron CG40378 + chr2R_5_530001 chr2R_530001 RAL-359 582 chr2R 1365842 1365893 chr2R 1365974 1366025 21 131 4.0 5.0 4.5 3.8 183 chr2R 1365842 intron l(2)41Ab + chr2R 1365934 intron l(2)41Ab + chr2R 1366025 intron l(2)41Ab + chr2R_21_1365001 chr2R_1365001 RAL-359 583 chr2R 1516586 1516601 chr2R 1521334 1521349 1731 10 4748 15.5 4.5 10.0 0.9 4763 chr2R 1516586 exon Maf1 - chr2R 1518968 intron Maf1 - chr2R 1521349 5` UTR Maf1 - chr2R_10_1515001 chr2R_1515001 RAL-359 584 chr2R 2015116 2015161 chr2R 2015213 2015258 10 96 3.5 2.5 3.0 2.5 142 chr2R 2015116 intron CG17684 - chr2R 2015187 intron CG17684 - chr2R 2015258 intron CG17684 - chr2R_10_2015001 chr2R_2015001 RAL-359 585 chr2R 2498966 2499015 chr2R 2508133 2508182 roo 10 9166 2.5 2.5 2.5 2.9 9216 chr2R 2498966 intron MFS17 - chr2R 2503574 intron MFS17 - chr2R 2508182 intron MFS17 - chr2R_10_2500001 chr2R_2500001 RAL-359 586 chr2R 2508300 2508336 chr2R 2508458 2508494 11 157 2.5 5.0 3.8 2.3 194 chr2R 2508300 intron MFS17 - chr2R 2508397 intron MFS17 - chr2R 2508494 intron MFS17 - chr2R_11_2505001 chr2R_2505001 RAL-359 587 chr2R 3515264 3515304 chr2R 3515372 3515412 7 108 6.0 9.0 7.5 0.8 148 chr2R 3515264 intergenic not near genes chr2R 3515338 intergenic not near genes chr2R 3515412 intergenic not near genes chr2R_7_3515001 chr2R_3515001 RAL-359 588 chr2R 3532601 3532637 chr2R 3536064 3536100 Doc 7 3463 2.5 2.5 2.5 2.0 3499 chr2R 3532601 intergenic not near genes chr2R 3534350 intergenic not near genes chr2R 3536100 intergenic not near genes chr2R_7_3530001 chr2R_3530001 RAL-359 589 chr2R 4312945 4312950 chr2R 4313049 4313054 4 104 10.0 9.5 9.8 0.4 109 chr2R 4312945 intergenic not near genes chr2R 4313000 intergenic not near genes chr2R 4313054 intergenic not near genes chr2R_4_4310001 chr2R_4310001 RAL-359 590 chr2R 4312955 4312985 chr2R 4313048 4313089 9 103 6.5 9.0 7.8 1.0 134 chr2R 4312955 intergenic not near genes chr2R 4313022 intergenic not near genes chr2R 4313089 intergenic not near genes chr2R_9_4310001 chr2R_4310001 RAL-359 591 chr2R 4602823 4602873 chr2R 4603198 4603248 17 369 2.5 4.0 3.2 4.0 425 chr2R 4602823 intron p120ctn + chr2R 4603036 intron p120ctn + chr2R 4603248 intron p120ctn + chr2R_17_4600001 chr2R_4600001 RAL-359 592 chr2R 4621304 4621346 chr2R 4621859 4621906 15 557 2.5 4.5 3.5 3.3 602 chr2R 4621304 3` UTR CR44101 - chr2R 4621605 3` UTR CR44101 - chr2R 4621906 3` UTR CR44101 - chr2R_15_4620001 chr2R_4620001 RAL-359 593 chr2R 4622949 4622980 chr2R 4624110 4624159 1360 7 1173 3.0 6.5 4.8 1.2 1210 chr2R 4622949 intergenic CR44101 - chr2R 4623554 intergenic not near genes chr2R 4624159 intergenic not near genes chr2R_7_4620001 chr2R_4620001 RAL-359 594 chr2R 4634629 4634643 chr2R 4634729 4634742 4 100 13.0 8.0 10.5 0.3 113 chr2R 4634629 intergenic not near genes chr2R 4634686 intergenic not near genes chr2R 4634742 intergenic not near genes chr2R_4_4630001 chr2R_4630001 RAL-359 595 chr2R 4746216 4746245 chr2R 4746862 4746891 9 645 6.0 8.0 7.0 1.1 675 chr2R 4746216 intron conu + chr2R 4746554 intron conu + chr2R 4746891 intron conu + chr2R_9_4745001 chr2R_4745001 RAL-359 596 chr2R 4838851 4838906 chr2R 4840394 4840449 transib2 12 1543 2.0 2.0 2.0 4.0 1598 chr2R 4838851 intergenic not near genes chr2R 4839650 intergenic not near genes chr2R 4840449 intergenic not near genes chr2R_12_4835001 chr2R_4835001 RAL-359 597 chr2R 4870733 4870739 chr2R 4871264 4871270 R1A1-element 4 530 6.5 10.5 8.5 0.4 537 chr2R 4870733 intergenic not near genes chr2R 4871002 intergenic not near genes chr2R 4871270 intergenic not near genes chr2R_4_4870001 chr2R_4870001 RAL-359 598 chr2R 4887600 4887638 chr2R 4887816 4887854 9 216 5.5 5.0 5.2 1.5 254 chr2R 4887600 intergenic not near genes chr2R 4887727 intergenic not near genes chr2R 4887854 intergenic not near genes chr2R_9_4885001 chr2R_4885001 RAL-359 599 chr2R 4888586 4888598 chr2R 4888692 4888705 7 107 8.5 3.0 5.8 1.0 119 chr2R 4888586 intergenic not near genes chr2R 4888646 intergenic not near genes chr2R 4888705 intergenic not near genes chr2R_7_4885001 chr2R_4885001 RAL-359 600 chr2R 4924458 4924462 chr2R 4924609 4924613 4 151 8.0 1.5 4.8 0.7 155 chr2R 4924458 intron Ir41a + chr2R 4924536 intron Ir41a + chr2R 4924613 intron Ir41a + chr2R_4_4920001 chr2R_4920001 RAL-359 601 chr2R 4957009 4957041 chr2R 4957131 4957149 15 121 6.0 5.0 5.5 2.3 140 chr2R 4957009 intron Ir41a + chr2R 4957079 intron Ir41a + chr2R 4957149 intron Ir41a + chr2R_15_4955001 chr2R_4955001 RAL-359 602 chr2R 5075928 5075973 chr2R 5076070 5076123 11 143 32.0 31.0 31.5 0.3 195 chr2R 5075928 intergenic not near genes chr2R 5076026 intergenic not near genes chr2R 5076123 intergenic not near genes chr2R_11_5075001 chr2R_5075001 RAL-359 603 chr2R 5125241 5125273 chr2R 5125575 5125611 6 337 4.0 4.0 4.0 1.2 370 chr2R 5125241 intron gus - chr2R 5125426 intron gus - chr2R 5125611 intron gus - chr2R_6_5125001 chr2R_5125001 RAL-359 604 chr2R 5256741 5256791 chr2R 5256846 5256899 22 104 8.0 7.5 7.8 2.5 158 chr2R 5256741 intergenic not near genes chr2R 5256820 intergenic not near genes chr2R 5256899 intergenic not near genes chr2R_22_5255001 chr2R_5255001 RAL-359 605 chr2R 5302087 5302148 chr2R 5304215 5304271 15 2125 37.5 62.0 49.8 0.3 2184 chr2R 5302087 intergenic not near genes chr2R 5303179 intergenic not near genes chr2R 5304271 intergenic not near genes chr2R_15_5300001 chr2R_5300001 RAL-359 606 chr2R 5417982 5418024 chr2R 5420634 5420676 Burdock 17 2650 6.0 5.5 5.8 2.5 2694 chr2R 5417982 intron laccase2 + chr2R 5419329 intron laccase2 + chr2R 5420676 intron laccase2 + chr2R_17_5415001 chr2R_5415001 RAL-359 607 chr2R 5491647 5491698 chr2R 5491759 5491807 10 106 3.5 4.5 4.0 2.0 160 chr2R 5491647 intron CG30440 - chr2R 5491727 intron CG30440 - chr2R 5491807 intron CG30440 - chr2R_10_5490001 chr2R_5490001 RAL-359 608 chr2R 5543217 5543221 chr2R 5547291 5547325 invader1 4 4095 0.0 8.5 4.2 0.8 4108 chr2R 5543217 intron CG30438 + chr2R 5545271 intron CG30438 + chr2R 5547325 intron CG30438 + chr2R_4_5545001 chr2R_5545001 RAL-359 609 chr2R 5710644 5710682 chr2R 5710741 5710767 6 95 2.5 6.5 4.5 1.1 123 chr2R 5710644 intron ap - chr2R 5710706 intron ap - chr2R 5710767 intron ap - chr2R_6_5710001 chr2R_5710001 RAL-359 610 chr2R 5750438 5750451 chr2R 5750550 5750563 5 112 7.0 5.0 6.0 0.7 125 chr2R 5750438 intergenic not near genes chr2R 5750500 intergenic not near genes chr2R 5750563 intergenic not near genes chr2R_5_5750001 chr2R_5750001 RAL-359 611 chr2R 5790447 5790496 chr2R 5790552 5790601 9 105 5.0 4.0 4.5 1.6 154 chr2R 5790447 intergenic not near genes chr2R 5790524 intergenic not near genes chr2R 5790601 intergenic not near genes chr2R_9_5790001 chr2R_5790001 RAL-359 612 chr2R 5794214 5794264 chr2R 5794362 5794412 13 147 5.5 4.0 4.8 2.2 198 chr2R 5794214 intergenic not near genes chr2R 5794313 intergenic not near genes chr2R 5794412 intergenic not near genes chr2R_13_5790001 chr2R_5790001 RAL-359 613 chr2R 5869255 5869306 chr2R 5874351 5874402 flea 16 5094 5.5 4.0 4.8 2.8 5147 chr2R 5869255 intergenic not near genes chr2R 5871828 intergenic not near genes chr2R 5874402 intergenic not near genes chr2R_16_5870001 chr2R_5870001 RAL-359 614 chr2R 5878905 5878957 chr2R 5879004 5879032 11 97 3.5 4.0 3.8 2.3 127 chr2R 5878905 intergenic CG44438 - chr2R 5878968 intergenic CG44438 - chr2R 5879032 intergenic CG44438 - chr2R_11_5875001 chr2R_5875001 RAL-359 615 chr2R 5885346 5885371 chr2R 5885495 5885520 8 149 4.5 2.0 3.2 1.9 174 chr2R 5885346 5` UTR CR44125 + chr2R 5885433 5` UTR CR44125 + chr2R 5885520 5` UTR CR44125 + chr2R_8_5885001 chr2R_5885001 RAL-359 616 chr2R 5902138 5902161 chr2R 5909717 5909740 17.6 6 7577 7.0 3.5 5.2 1.0 7602 chr2R 5902138 intron CG43366 + chr2R 5905939 intron CG43366 + chr2R 5909740 intron CG43366 + chr2R_6_5905001 chr2R_5905001 RAL-359 617 chr2R 5947048 5947083 chr2R 5947189 5947224 12 141 3.5 3.5 3.5 2.7 176 chr2R 5947048 intergenic not near genes chr2R 5947136 intergenic not near genes chr2R 5947224 intergenic not near genes chr2R_12_5945001 chr2R_5945001 RAL-359 618 chr2R 6016776 6016814 chr2R 6016879 6016918 14 104 3.0 6.0 4.5 2.5 142 chr2R 6016776 intergenic not near genes chr2R 6016847 intergenic not near genes chr2R 6016918 intergenic not near genes chr2R_14_6015001 chr2R_6015001 RAL-359 619 chr2R 6050289 6050298 chr2R 6050402 6050411 4 113 11.5 0.0 5.8 0.6 122 chr2R 6050289 intergenic CG34212 - chr2R 6050350 intergenic CG34212 - chr2R 6050411 intergenic CG34212 - chr2R_4_6050001 chr2R_6050001 RAL-359 620 chr2R 6088355 6088386 chr2R 6088467 6088499 11 113 4.5 6.5 5.5 1.7 144 chr2R 6088355 intergenic not near genes chr2R 6088427 intergenic not near genes chr2R 6088499 intergenic not near genes chr2R_11_6085001 chr2R_6085001 RAL-359 621 chr2R 6129306 6129353 chr2R 6129404 6129451 8 98 4.0 0.5 2.2 2.5 145 chr2R 6129306 intron EcR - chr2R 6129378 intron EcR - chr2R 6129451 intron EcR - chr2R_8_6125001 chr2R_6125001 RAL-359 622 chr2R 6178111 6178143 chr2R 6178257 6178289 4 146 3.0 3.5 3.2 1.0 178 chr2R 6178111 intergenic not near genes chr2R 6178200 intergenic not near genes chr2R 6178289 intergenic not near genes chr2R_4_6175001 chr2R_6175001 RAL-359 623 chr2R 6178659 6178711 chr2R 6178766 6178818 8 106 4.5 2.5 3.5 1.8 159 chr2R 6178659 intergenic not near genes chr2R 6178738 intergenic not near genes chr2R 6178818 intergenic not near genes chr2R_8_6175001 chr2R_6175001 RAL-359 624 chr2R 6194666 6194698 chr2R 6194769 6194786 12 101 4.0 4.0 4.0 2.4 120 chr2R 6194666 intron Ptr - chr2R 6194726 intron Ptr - chr2R 6194786 intron Ptr - chr2R_12_6190001 chr2R_6190001 RAL-359 625 chr2R 6236708 6236736 chr2R 6236835 6236863 4 127 1.5 3.0 2.2 1.2 155 chr2R 6236708 intron bin3 + chr2R 6236786 intron bin3 + chr2R 6236863 intron bin3 + chr2R_4_6235001 chr2R_6235001 RAL-359 626 chr2R 6494512 6494552 chr2R 6499289 6499334 F-element 8 4779 1.5 1.5 1.5 3.2 4822 chr2R 6494512 intergenic not near genes chr2R 6496923 intergenic not near genes chr2R 6499334 intergenic not near genes chr2R_8_6495001 chr2R_6495001 RAL-359 627 chr2R 6546698 6546749 chr2R 6546819 6546870 13 120 2.0 2.0 2.0 4.3 172 chr2R 6546698 intron jing + chr2R 6546784 intron jing + chr2R 6546870 intron jing + chr2R_13_6545001 chr2R_6545001 RAL-359 628 chr2R 6579782 6579804 chr2R 6584889 6584911 flea 7 5107 3.0 4.0 3.5 1.6 5129 chr2R 6579782 intron jing + chr2R 6582346 intron jing + chr2R 6584911 intron jing + chr2R_7_6580001 chr2R_6580001 RAL-359 629 chr2R 6633196 6633232 chr2R 6633293 6633329 11 95 1.5 2.5 2.0 3.7 133 chr2R 6633196 intergenic Vha16-1 -,Trap1 - chr2R 6633262 intergenic Vha16-1 -,Trap1 - chr2R 6633329 intergenic Vha16-1 -,Trap1 - chr2R_11_6630001 chr2R_6630001 RAL-359 630 chr2R 6699571 6699620 chr2R 6699676 6699725 12 105 4.0 2.5 3.2 2.9 154 chr2R 6699571 intergenic Rab2 + chr2R 6699648 intergenic Rab2 + chr2R 6699725 intergenic Rab2 +,CG3409 -,CG45092 - chr2R_12_6695001 chr2R_6695001 RAL-359 631 chr2R 6712573 6712601 chr2R 6712683 6712689 12 112 4.0 5.5 4.8 2.1 116 chr2R 6712573 intron,intron CG3409 -,CG45092 - chr2R 6712631 intron,intron CG3409 -,CG45092 - chr2R 6712689 intron,intron CG3409 -,CG45092 - chr2R_12_6710001 chr2R_6710001 RAL-359 632 chr2R 6846318 6846328 chr2R 6846415 6846425 5 97 0.0 9.0 4.5 0.9 107 chr2R 6846318 intergenic not near genes chr2R 6846372 intergenic not near genes chr2R 6846425 intergenic not near genes chr2R_5_6845001 chr2R_6845001 RAL-359 633 chr2R 6887516 6887561 chr2R 6887625 6887670 10 107 2.0 4.5 3.2 2.4 154 chr2R 6887516 intron Spn42De + chr2R 6887593 intron Spn42De + chr2R 6887670 intron Spn42De + chr2R_10_6885001 chr2R_6885001 RAL-359 634 chr2R 6921653 6921694 chr2R 6921767 6921792 10 112 1.5 7.5 4.5 1.8 139 chr2R 6921653 3` UTR CG30158 + chr2R 6921722 3` UTR CG30158 + chr2R 6921792 3` UTR CG30158 + chr2R_10_6920001 chr2R_6920001 RAL-359 635 chr2R 6952152 6952166 chr2R 6959752 6959766 opus 4 7600 4.0 4.5 4.2 0.8 7614 chr2R 6952152 intron,intron,exon mim -,CheB42c -,ppk25 + chr2R 6955959 intron,intron mim -,CheB42c - chr2R 6959766 intron,intron mim -,CheB42c - chr2R_4_6955001 chr2R_6955001 RAL-359 636 chr2R 7180997 7181022 chr2R 7181083 7181118 12 93 7.5 6.5 7.0 1.5 121 chr2R 7180997 intron pk + chr2R 7181058 intron pk + chr2R 7181118 intron pk + chr2R_12_7180001 chr2R_7180001 RAL-359 637 chr2R 7196552 7196584 chr2R 7201347 7201379 F-element 10 4793 4.0 0.0 2.0 3.3 4827 chr2R 7196552 intron pk + chr2R 7198966 intron pk + chr2R 7201379 intron pk + chr2R_10_7195001 chr2R_7195001 RAL-359 638 chr2R 7209848 7209872 chr2R 7217616 7217640 roo 5 7768 6.0 13.0 9.5 0.5 7792 chr2R 7209848 intron pk + chr2R 7213744 intron pk + chr2R 7217640 intron pk + chr2R_5_7210001 chr2R_7210001 RAL-359 639 chr2R 7272234 7272285 chr2R 7272345 7272348 4 94 0.0 3.0 1.5 1.6 114 chr2R 7272234 intergenic Br140 - chr2R 7272291 3` UTR Br140 - chr2R 7272348 3` UTR Br140 - chr2R_4_7270001 chr2R_7270001 RAL-359 640 chr2R 7290179 7290216 chr2R 7290301 7290338 10 121 4.5 6.0 5.2 1.6 159 chr2R 7290179 intron pwn + chr2R 7290258 intron pwn + chr2R 7290338 intron pwn + chr2R_10_7290001 chr2R_7290001 RAL-359 641 chr2R 7353376 7353415 chr2R 7353502 7353541 4 126 2.5 2.5 2.5 1.1 165 chr2R 7353376 intron Dscam1 - chr2R 7353458 intron Dscam1 - chr2R 7353541 intron Dscam1 - chr2R_4_7350001 chr2R_7350001 RAL-359 642 chr2R 7417904 7418161 chr2R 7418001 7418260 20 98 4.0 9.5 6.8 2.6 356 chr2R 7417904 intergenic not near genes chr2R 7418082 intergenic not near genes chr2R 7418260 intergenic not near genes chr2R_20_7415001 chr2R_7415001 RAL-359 643 chr2R 7434881 7434904 chr2R 7439202 7439225 Juan 5 4321 3.0 6.0 4.5 0.9 4344 chr2R 7434881 intergenic so + chr2R 7437053 intergenic not near genes chr2R 7439225 intergenic not near genes chr2R_5_7435001 chr2R_7435001 RAL-359 644 chr2R 7471976 7472013 chr2R 7472074 7472076 6 87 2.0 6.5 4.2 1.2 100 chr2R 7471976 intron Aldh-III - chr2R 7472026 intron Aldh-III - chr2R 7472076 intron Aldh-III - chr2R_6_7470001 chr2R_7470001 RAL-359 645 chr2R 7551663 7551716 chr2R 7551774 7551827 15 109 4.0 6.0 5.0 2.5 164 chr2R 7551663 intron Corin + chr2R 7551745 intron Corin + chr2R 7551827 intron Corin + chr2R_15_7550001 chr2R_7550001 RAL-359 646 chr2R 7608390 7608442 chr2R 7613613 7613664 I-element 6 5223 0.5 0.0 0.2 5.0 5274 chr2R 7608390 intron CG1358 - chr2R 7611027 intron CG1358 - chr2R 7613664 intron CG1358 - chr2R_6_7610001 chr2R_7610001 RAL-359 647 chr2R 7621274 7621320 chr2R 7621400 7621414 9 116 2.5 4.0 3.2 2.1 140 chr2R 7621274 intergenic not near genes chr2R 7621344 intergenic not near genes chr2R 7621414 intergenic CR44444 - chr2R_9_7620001 chr2R_7620001 RAL-359 648 chr2R 7691991 7692036 chr2R 7692092 7692137 11 100 1.5 2.0 1.8 3.9 146 chr2R 7691991 intron CG1399 - chr2R 7692064 intron CG1399 - chr2R 7692137 intron CG1399 - chr2R_11_7690001 chr2R_7690001 RAL-359 649 chr2R 7743474 7743511 chr2R 7743575 7743608 4 100 3.5 1.5 2.5 1.1 134 chr2R 7743474 intron,intron CG30497 -,CG45093 - chr2R 7743541 intron,intron CG30497 -,CG45093 - chr2R 7743608 intron,intron CG30497 -,CG45093 - chr2R_4_7740001 chr2R_7740001 RAL-359 650 chr2R 7787081 7787110 chr2R 7787183 7787212 11 102 3.0 1.0 2.0 3.7 131 chr2R 7787081 intron CanB2 + chr2R 7787146 intron CanB2 + chr2R 7787212 intron CanB2 + chr2R_11_7785001 chr2R_7785001 RAL-359 651 chr2R 7815654 7815693 chr2R 7822143 7822177 Burdock 9 6488 7.0 2.5 4.8 1.6 6523 chr2R 7815654 intergenic CG1882 + chr2R 7818916 intergenic not near genes chr2R 7822177 3` UTR cathD - chr2R_9_7815001 chr2R_7815001 RAL-359 652 chr2R 7842176 7842226 chr2R 7842284 7842326 15 106 6.5 4.0 5.2 2.4 150 chr2R 7842176 intron Dgk - chr2R 7842251 intron Dgk - chr2R 7842326 intron Dgk - chr2R_15_7840001 chr2R_7840001 RAL-359 653 chr2R 7862216 7862251 chr2R 7867349 7867382 flea 6 5132 3.0 1.5 2.2 1.9 5166 chr2R 7862216 intron Dgk - chr2R 7864799 intron Dgk - chr2R 7867382 intron Dgk - chr2R_6_7860001 chr2R_7860001 RAL-359 654 chr2R 7869178 7869217 chr2R 7873984 7874001 Doc 11 4799 8.0 3.5 5.8 1.6 4823 chr2R 7869178 intron Dgk - chr2R 7871590 intron Dgk - chr2R 7874001 intron Dgk - chr2R_11_7870001 chr2R_7870001 RAL-359 655 chr2R 7916412 7916452 chr2R 7916517 7916557 9 103 4.0 5.5 4.8 1.6 145 chr2R 7916412 5` UTR CG12159 - chr2R 7916484 intergenic CG12159 -,Cul1 + chr2R 7916557 intergenic CG12159 -,Cul1 + chr2R_9_7915001 chr2R_7915001 RAL-359 656 chr2R 7997418 7997456 chr2R 7997544 7997582 10 126 2.0 3.5 2.8 2.6 164 chr2R 7997418 exon Hey - chr2R 7997500 intron Hey - chr2R 7997582 intron Hey - chr2R_10_7995001 chr2R_7995001 RAL-359 657 chr2R 8014415 8014451 chr2R 8014519 8014556 10 104 1.5 0.5 1.0 5.0 141 chr2R 8014415 intergenic not near genes chr2R 8014486 intergenic not near genes chr2R 8014556 intergenic not near genes chr2R_10_8010001 chr2R_8010001 RAL-359 658 chr2R 8151680 8151696 chr2R 8151778 8151794 6 98 4.5 6.0 5.2 1.0 114 chr2R 8151680 intron,intron Lpin -,kermit - chr2R 8151737 intron,intron Lpin -,kermit - chr2R 8151794 intron,intron Lpin -,kermit - chr2R_6_8150001 chr2R_8150001 RAL-359 659 chr2R 8151697 8151713 chr2R 8151773 8151810 7 91 2.0 5.5 3.8 1.5 113 chr2R 8151697 intron,intron Lpin -,kermit - chr2R 8151754 intron,intron Lpin -,kermit - chr2R 8151810 intron,intron Lpin -,kermit - chr2R_7_8150001 chr2R_8150001 RAL-359 660 chr2R 8160914 8160944 chr2R 8161024 8161049 1360 10 109 7.0 9.5 8.2 1.1 135 chr2R 8160914 exon CG8708 - chr2R 8160982 intron CG8708 - chr2R 8161049 intron CG8708 - chr2R_10_8160001 chr2R_8160001 RAL-359 661 chr2R 8236016 8236057 chr2R 8236117 8236157 10 100 4.0 0.0 2.0 3.3 141 chr2R 8236016 intergenic not near genes chr2R 8236086 intergenic not near genes chr2R 8236157 intergenic not near genes chr2R_10_8235001 chr2R_8235001 RAL-359 662 chr2R 8330850 8330885 chr2R 8331356 8331391 roo 9 506 2.5 4.0 3.2 2.1 541 chr2R 8330850 intron pdm3 + chr2R 8331120 intron pdm3 + chr2R 8331391 intron pdm3 + chr2R_9_8330001 chr2R_8330001 RAL-359 663 chr2R 8398207 8398243 chr2R 8403001 8403014 Doc 5 4789 4.0 2.0 3.0 1.2 4807 chr2R 8398207 intron CG2121 - chr2R 8400610 intron CG2121 - chr2R 8403014 intron CG2121 - chr2R_5_8400001 chr2R_8400001 RAL-359 664 chr2R 8452019 8452065 chr2R 8452122 8452162 7 97 2.0 7.5 4.8 1.2 143 chr2R 8452019 intergenic Mal-A1 - chr2R 8452090 intergenic Mal-A1 - chr2R 8452162 intergenic Mal-A1 - chr2R_7_8450001 chr2R_8450001 RAL-359 665 chr2R 8489705 8489757 chr2R 8489804 8489845 15 93 3.5 3.0 3.2 3.6 140 chr2R 8489705 intron mtt - chr2R 8489775 intron mtt - chr2R 8489845 intron mtt - chr2R_15_8485001 chr2R_8485001 RAL-359 666 chr2R 8525084 8525104 chr2R 8525169 8525201 4 94 0.5 5.5 3.0 1.0 117 chr2R 8525084 intron mtt - chr2R 8525142 intron mtt - chr2R 8525201 intron mtt - chr2R_4_8525001 chr2R_8525001 RAL-359 667 chr2R 8566043 8566063 chr2R 8567009 8567029 1360 10 966 3.0 6.5 4.8 1.7 986 chr2R 8566043 5` UTR Cyp6a14 - chr2R 8566536 5` UTR Cyp6a14 - chr2R 8567029 5` UTR Cyp6a14 - chr2R_10_8565001 chr2R_8565001 RAL-359 668 chr2R 8568727 8568737 chr2R 8568830 8568840 4 103 12.5 4.5 8.5 0.4 113 chr2R 8568727 intergenic not near genes chr2R 8568784 intergenic not near genes chr2R 8568840 intergenic not near genes chr2R_4_8565001 chr2R_8565001 RAL-359 669 chr2R 8568741 8568773 chr2R 8568828 8568876 20 102 4.0 3.5 3.8 4.2 135 chr2R 8568741 intergenic not near genes chr2R 8568808 intergenic not near genes chr2R 8568876 intergenic not near genes chr2R_20_8565001 chr2R_8565001 RAL-359 670 chr2R 8648239 8648288 chr2R 8648464 8648513 10 225 5.5 3.5 4.5 1.8 274 chr2R 8648239 intergenic not near genes chr2R 8648376 intergenic not near genes chr2R 8648513 intergenic not near genes chr2R_10_8645001 chr2R_8645001 RAL-359 671 chr2R 8722762 8722794 chr2R 8723008 8723041 pogo 8 250 4.5 2.0 3.2 1.9 279 chr2R 8722762 intron CG14767 - chr2R 8722902 intron CG14767 - chr2R 8723041 intron CG14767 - chr2R_8_8720001 chr2R_8720001 RAL-359 672 chr2R 8777929 8777946 chr2R 8784153 8784170 diver 6 6224 1.5 7.5 4.5 1.1 6241 chr2R 8777929 intergenic not near genes chr2R 8781050 intergenic not near genes chr2R 8784170 intergenic not near genes chr2R_6_8780001 chr2R_8780001 RAL-359 673 chr2R 8805415 8805432 chr2R 8805513 8805530 5 98 0.0 6.5 3.2 1.2 115 chr2R 8805415 intron sns + chr2R 8805472 intron sns + chr2R 8805530 intron sns + chr2R_5_8805001 chr2R_8805001 RAL-359 674 chr2R 8907116 8907167 chr2R 8907289 8907340 13 173 23.5 23.5 23.5 0.5 224 chr2R 8907116 intergenic CG8258 -,CG30349 + chr2R 8907228 intergenic CG8258 -,CG30349 + chr2R 8907340 intergenic CG30349 +,CG8258 - chr2R_13_8905001 chr2R_8905001 RAL-359 675 chr2R 9026811 9026855 chr2R 9026951 9026995 14 140 2.5 2.5 2.5 4.0 184 chr2R 9026811 intron CG8170 - chr2R 9026903 intron CG8170 - chr2R 9026995 intron CG8170 - chr2R_14_9025001 chr2R_9025001 RAL-359 676 chr2R 9047407 9047438 chr2R 9047517 9047553 10 113 3.5 2.0 2.8 2.6 146 chr2R 9047407 intron CG13743 - chr2R 9047480 intron CG13743 - chr2R 9047553 intron CG13743 - chr2R_10_9045001 chr2R_9045001 RAL-359 677 chr2R 9138011 9138020 chr2R 9138169 9138203 5 172 0.0 2.0 1.0 2.5 192 chr2R 9138011 intergenic alc -,CG44286 +,CG8788 + chr2R 9138107 intergenic alc -,CG44286 +,CG8788 + chr2R 9138203 intergenic alc -,CG44286 +,CG8788 + chr2R_5_9135001 chr2R_9135001 RAL-359 678 chr2R 9145112 9145125 chr2R 9145174 9145224 4 90 1.0 3.5 2.2 1.2 112 chr2R 9145112 exon Prp38 + chr2R 9145168 intergenic Prp38 +,CG30344 + chr2R 9145224 intergenic CG30344 +,Prp38 + chr2R_4_9145001 chr2R_9145001 RAL-359 679 chr2R 9148935 9148986 chr2R 9149034 9149085 14 95 2.0 2.0 2.0 4.7 150 chr2R 9148935 exon CG30345 + chr2R 9149010 intron CG30345 + chr2R 9149085 exon CG30345 + chr2R_14_9145001 chr2R_9145001 RAL-359 680 chr2R 9151292 9151327 chr2R 9157782 9157817 Burdock 8 6489 5.5 4.5 5.0 1.3 6525 chr2R 9151292 exon CG30345 + chr2R 9154554 intergenic not near genes chr2R 9157817 intergenic CG8008 - chr2R_8_9150001 chr2R_9150001 RAL-359 681 chr2R 9183112 9183160 chr2R 9183214 9183262 13 101 5.5 5.5 5.5 2.0 150 chr2R 9183112 intron ltd - chr2R 9183187 intron ltd - chr2R 9183262 intron ltd - chr2R_13_9180001 chr2R_9180001 RAL-359 682 chr2R 9192334 9192337 chr2R 9192448 9192451 4 114 5.0 8.5 6.8 0.5 117 chr2R 9192334 intergenic CG45085 -,CG8026 - chr2R 9192392 intergenic CG45085 -,CG8026 - chr2R 9192451 intergenic CG45085 -,CG8026 - chr2R_4_9190001 chr2R_9190001 RAL-359 683 chr2R 9192338 9192358 chr2R 9192446 9192472 6 113 2.5 8.0 5.2 1.0 134 chr2R 9192338 intergenic CG45085 -,CG8026 - chr2R 9192405 intergenic CG45085 -,CG8026 - chr2R 9192472 intergenic CG45085 -,CG8026 - chr2R_6_9190001 chr2R_9190001 RAL-359 684 chr2R 9212674 9212722 chr2R 9213180 9213228 roo 6 505 3.0 2.0 2.5 1.7 554 chr2R 9212674 intergenic CR45309 + chr2R 9212951 intergenic CR45309 + chr2R 9213228 5` UTR CR45309 + chr2R_6_9210001 chr2R_9210001 RAL-359 685 chr2R 9227857 9227902 chr2R 9227964 9228009 13 107 5.0 2.0 3.5 2.9 152 chr2R 9227857 3` UTR hig - chr2R 9227933 3` UTR hig - chr2R 9228009 3` UTR hig - chr2R_13_9225001 chr2R_9225001 RAL-359 686 chr2R 9328898 9328936 chr2R 9329020 9329058 7 122 3.0 3.5 3.2 1.7 160 chr2R 9328898 intron,intron CG13739 -,CG13954 - chr2R 9328978 intron,intron CG13739 -,CG13954 - chr2R 9329058 intron,intron CG13739 -,CG13954 - chr2R_7_9325001 chr2R_9325001 RAL-359 687 chr2R 9408212 9408253 chr2R 9408315 9408356 14 101 1.5 7.0 4.2 2.7 144 chr2R 9408212 intron wun - chr2R 9408284 intron wun - chr2R 9408356 intron wun - chr2R_14_9405001 chr2R_9405001 RAL-359 688 chr2R 9480066 9480107 chr2R 9490617 9490635 roo 11 10548 6.0 9.0 7.5 1.3 10569 chr2R 9480066 intergenic not near genes chr2R 9485350 intergenic not near genes chr2R 9490635 intergenic not near genes chr2R_11_9485001 chr2R_9485001 RAL-359 689 chr2R 9542201 9542242 chr2R 9542408 9542438 9 207 0.0 3.0 1.5 3.6 237 chr2R 9542201 3` UTR CG1888 - chr2R 9542320 3` UTR CG1888 - chr2R 9542438 3` UTR CG1888 - chr2R_9_9540001 chr2R_9540001 RAL-359 690 chr2R 9561812 9561850 chr2R 9561920 9561958 7 108 0.0 0.0 0.0 7.0 146 chr2R 9561812 3` UTR,intron CR45281 -,CG1809 + chr2R 9561885 3` UTR,intron CR45281 -,CG1809 + chr2R 9561958 3` UTR,intron CR45281 -,CG1809 + chr2R_7_9560001 chr2R_9560001 RAL-359 691 chr2R 9616618 9616646 chr2R 9616743 9616771 8 123 2.5 3.5 3.0 2.0 153 chr2R 9616618 intron Mmp2 - chr2R 9616694 intron Mmp2 - chr2R 9616771 intron Mmp2 - chr2R_8_9615001 chr2R_9615001 RAL-359 692 chr2R 9642385 9642417 chr2R 9642491 9642523 11 103 7.5 3.5 5.5 1.7 138 chr2R 9642385 intron Mmp2 - chr2R 9642454 intron Mmp2 - chr2R 9642523 intron Mmp2 - chr2R_11_9640001 chr2R_9640001 RAL-359 693 chr2R 9699398 9699440 chr2R 9699502 9699547 9 104 4.5 5.0 4.8 1.6 149 chr2R 9699398 intergenic not near genes chr2R 9699472 intergenic not near genes chr2R 9699547 intergenic not near genes chr2R_9_9695001 chr2R_9695001 RAL-359 694 chr2R 9726604 9726640 chr2R 9734175 9734211 17.6 5 7571 8.5 6.5 7.5 0.6 7607 chr2R 9726604 intron sqa - chr2R 9730408 intron sqa - chr2R 9734211 intron sqa - chr2R_5_9730001 chr2R_9730001 RAL-359 695 chr2R 9871025 9871065 chr2R 9871531 9871553 roo 4 498 5.0 5.0 5.0 0.7 528 chr2R 9871025 intron cbx - chr2R 9871289 intron cbx - chr2R 9871553 intron,5` UTR cbx -,CG18446 + chr2R_4_9870001 chr2R_9870001 RAL-359 696 chr2R 9928402 9928446 chr2R 9928544 9928591 7 142 2.5 2.5 2.5 2.0 189 chr2R 9928402 intron Mef2 - chr2R 9928496 intron Mef2 - chr2R 9928591 intron Mef2 - chr2R_7_9925001 chr2R_9925001 RAL-359 697 chr2R 9941976 9942013 chr2R 9942077 9942114 4 101 4.0 3.5 3.8 0.8 138 chr2R 9941976 intron Mef2 - chr2R 9942045 intron Mef2 - chr2R 9942114 intron Mef2 - chr2R_4_9940001 chr2R_9940001 RAL-359 698 chr2R 9945428 9945466 chr2R 9945642 9945682 BS 5 214 1.5 2.0 1.8 1.8 254 chr2R 9945428 intron Mef2 - chr2R 9945555 intron Mef2 - chr2R 9945682 intron Mef2 - chr2R_5_9945001 chr2R_9945001 RAL-359 699 chr2R 10017634 10017679 chr2R 10017733 10017778 12 96 3.5 4.0 3.8 2.5 144 chr2R 10017634 intron Pka-R2 - chr2R 10017706 intron Pka-R2 - chr2R 10017778 intron Pka-R2 - chr2R_12_10015001 chr2R_10015001 RAL-359 700 chr2R 10047793 10047834 chr2R 10047896 10047937 5 103 3.5 5.0 4.2 1.0 144 chr2R 10047793 intron oys - chr2R 10047865 intron oys - chr2R 10047937 intron oys - chr2R_5_10045001 chr2R_10045001 RAL-359 701 chr2R 10088330 10088353 chr2R 10088662 10088688 7 331 1.5 0.0 0.8 3.9 358 chr2R 10088330 intron CG2269 + chr2R 10088509 intron CG2269 + chr2R 10088688 intron CG2269 + chr2R_7_10085001 chr2R_10085001 RAL-359 702 chr2R 10107165 10107212 chr2R 10107272 10107319 14 106 4.0 6.0 5.0 2.3 154 chr2R 10107165 intron 14-3-3zeta + chr2R 10107242 intron 14-3-3zeta + chr2R 10107319 intron 14-3-3zeta + chr2R_14_10105001 chr2R_10105001 RAL-359 703 chr2R 10122721 10122750 chr2R 10122951 10122980 8 230 6.5 3.5 5.0 1.3 259 chr2R 10122721 intergenic Ccs - chr2R 10122850 intergenic Ccs - chr2R 10122980 intergenic Ccs - chr2R_8_10120001 chr2R_10120001 RAL-359 704 chr2R 10132172 10132220 chr2R 10132271 10132320 12 99 0.5 4.5 2.5 3.4 148 chr2R 10132172 intron gem + chr2R 10132246 intron gem + chr2R 10132320 exon gem + chr2R_12_10130001 chr2R_10130001 RAL-359 705 chr2R 10176868 10176910 chr2R 10186056 10186097 roo 10 9187 3.5 6.5 5.0 1.7 9229 chr2R 10176868 intron KCNQ - chr2R 10181482 intron KCNQ - chr2R 10186097 intron KCNQ - chr2R_10_10180001 chr2R_10180001 RAL-359 706 chr2R 10216198 10216212 chr2R 10216296 10216310 6 98 6.0 4.0 5.0 1.0 112 chr2R 10216198 intron,intron CG12912 -,Hr46 - chr2R 10216254 intron,intron CG12912 -,Hr46 - chr2R 10216310 intron,intron CG12912 -,Hr46 - chr2R_6_10215001 chr2R_10215001 RAL-359 707 chr2R 10225715 10225750 chr2R 10225817 10225852 8 102 0.0 3.5 1.8 2.9 137 chr2R 10225715 intron,intron CG12912 -,Hr46 - chr2R 10225784 intron,intron CG12912 -,Hr46 - chr2R 10225852 intron,intron CG12912 -,Hr46 - chr2R_8_10225001 chr2R_10225001 RAL-359 708 chr2R 10300629 10300680 chr2R 10300745 10300796 4 116 0.0 0.0 0.0 4.0 167 chr2R 10300629 intron CAP + chr2R 10300712 intron CAP + chr2R 10300796 intron CAP + chr2R_4_10300001 chr2R_10300001 RAL-359 709 chr2R 10318507 10318537 chr2R 10318613 10318643 11 106 1.0 9.0 5.0 1.8 136 chr2R 10318507 intron Ndg + chr2R 10318575 intron Ndg + chr2R 10318643 intron Ndg + chr2R_11_10315001 chr2R_10315001 RAL-359 710 chr2R 10352662 10352702 chr2R 10352754 10352799 8 89 4.0 5.0 4.5 1.5 137 chr2R 10352662 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352730 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352799 intron,exon,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R_8_10350001 chr2R_10350001 RAL-359 711 chr2R 10390903 10390938 chr2R 10390991 10391038 7 98 5.0 4.0 4.5 1.3 135 chr2R 10390903 intron CG42732 - chr2R 10390970 intron CG42732 - chr2R 10391038 intron CG42732 - chr2R_7_10390001 chr2R_10390001 RAL-359 712 chr2R 10419658 10419665 chr2R 10425325 10425337 4 5664 2.5 16.0 9.2 0.4 5679 chr2R 10419658 3` UTR Prx2540-2 + chr2R 10422498 intron,exon CG11825 -,CG33474 + chr2R 10425337 exon Prx2540-1 + chr2R_4_10420001 chr2R_10420001 RAL-359 713 chr2R 10429026 10429052 chr2R 10429095 10429141 11 87 3.5 1.0 2.2 3.4 115 chr2R 10429026 intergenic not near genes chr2R 10429084 intergenic not near genes chr2R 10429141 intergenic not near genes chr2R_11_10425001 chr2R_10425001 RAL-359 714 chr2R 10469003 10469053 chr2R 10469149 10469194 12 145 3.0 5.0 4.0 2.4 191 chr2R 10469003 intron CG11777 + chr2R 10469098 intron CG11777 + chr2R 10469194 intron CG11777 + chr2R_12_10465001 chr2R_10465001 RAL-359 715 chr2R 10528258 10528313 chr2R 10528693 10528747 4 435 3.0 4.0 3.5 0.9 489 chr2R 10528258 intron lola - chr2R 10528502 intron lola - chr2R 10528747 intron lola - chr2R_4_10525001 chr2R_10525001 RAL-359 716 chr2R 10551167 10551180 chr2R 10551306 10551319 5 139 0.0 3.5 1.8 1.8 152 chr2R 10551167 intergenic not near genes chr2R 10551243 intergenic not near genes chr2R 10551319 intergenic not near genes chr2R_5_10550001 chr2R_10550001 RAL-359 717 chr2R 10563232 10563255 chr2R 10563350 10563373 4 118 0.0 4.0 2.0 1.3 141 chr2R 10563232 intron psq + chr2R 10563302 intron psq + chr2R 10563373 intron psq + chr2R_4_10560001 chr2R_10560001 RAL-359 718 chr2R 10571989 10572030 chr2R 10572201 10572215 5 207 4.0 1.0 2.5 1.4 226 chr2R 10571989 intron psq + chr2R 10572102 intron psq + chr2R 10572215 intron psq + chr2R_5_10570001 chr2R_10570001 RAL-359 719 chr2R 10607449 10607491 chr2R 10607677 10607719 10 224 4.5 7.5 6.0 1.4 270 chr2R 10607449 intron psq + chr2R 10607584 intron psq + chr2R 10607719 intron psq + chr2R_10_10605001 chr2R_10605001 RAL-359 720 chr2R 10622340 10622363 chr2R 10637124 10637135 mdg1 5 14779 5.0 3.5 4.2 1.0 14795 chr2R 10622340 intron CG11883 + chr2R 10629738 intron CG11883 + chr2R 10637135 intron CG11883 + chr2R_5_10625001 chr2R_10625001 RAL-359 721 chr2R 10658037 10658074 chr2R 10658149 10658185 7 112 8.5 3.5 6.0 1.0 148 chr2R 10658037 intergenic CR44452 - chr2R 10658111 intergenic not near genes chr2R 10658185 intergenic not near genes chr2R_7_10655001 chr2R_10655001 RAL-359 722 chr2R 10671236 10671266 chr2R 10671334 10671345 4 93 5.5 0.0 2.8 1.1 109 chr2R 10671236 intergenic not near genes chr2R 10671290 intergenic not near genes chr2R 10671345 intergenic not near genes chr2R_4_10670001 chr2R_10670001 RAL-359 723 chr2R 10675361 10675409 chr2R 10675462 10675496 4 98 0.5 2.0 1.2 1.8 135 chr2R 10675361 intron stan + chr2R 10675428 intron stan + chr2R 10675496 intron stan + chr2R_4_10675001 chr2R_10675001 RAL-359 724 chr2R 10794890 10794937 chr2R 10794988 10795035 10 98 3.5 2.5 3.0 2.5 145 chr2R 10794890 intron CG33144 - chr2R 10794962 intron CG33144 - chr2R 10795035 intron CG33144 - chr2R_10_10790001 chr2R_10790001 RAL-359 725 chr2R 10827321 10827360 chr2R 10827424 10827468 8 106 6.0 4.5 5.2 1.3 147 chr2R 10827321 exon CG12325 + chr2R 10827394 3` UTR CG12325 + chr2R 10827468 3` UTR,3` UTR CG12325 +,CG12344 - chr2R_8_10825001 chr2R_10825001 RAL-359 726 chr2R 10851179 10851204 chr2R 10851284 10851309 4 105 1.5 2.0 1.8 1.4 130 chr2R 10851179 intron CG30015 - chr2R 10851244 intron CG30015 - chr2R 10851309 intron CG30015 - chr2R_4_10850001 chr2R_10850001 RAL-359 727 chr2R 10871631 10871673 chr2R 10871730 10871771 13 100 1.5 10.0 5.8 1.9 140 chr2R 10871631 intron CG30015 - chr2R 10871701 intron CG30015 - chr2R 10871771 intron CG30015 - chr2R_13_10870001 chr2R_10870001 RAL-359 728 chr2R 10892598 10892648 chr2R 10892698 10892741 24 97 6.5 4.5 5.5 3.7 143 chr2R 10892598 3` UTR CG30020 + chr2R 10892670 3` UTR CG30020 + chr2R 10892741 3` UTR CG30020 + chr2R_24_10890001 chr2R_10890001 RAL-359 729 chr2R 10948015 10948061 chr2R 10955586 10955615 17.6 4 7560 0.0 3.5 1.8 1.4 7600 chr2R 10948015 intergenic not near genes chr2R 10951815 intergenic not near genes chr2R 10955615 intergenic not near genes chr2R_4_10950001 chr2R_10950001 RAL-359 730 chr2R 10959072 10959093 chr2R 10959171 10959192 5 98 1.5 0.5 1.0 2.5 120 chr2R 10959072 intergenic not near genes chr2R 10959132 intergenic not near genes chr2R 10959192 intergenic not near genes chr2R_5_10955001 chr2R_10955001 RAL-359 731 chr2R 10974979 10974992 chr2R 10975108 10975121 4 129 7.5 1.5 4.5 0.7 142 chr2R 10974979 intergenic not near genes chr2R 10975050 intergenic not near genes chr2R 10975121 intergenic not near genes chr2R_4_10975001 chr2R_10975001 RAL-359 732 chr2R 11009800 11009841 chr2R 11018994 11019027 roo 6 9192 3.5 2.0 2.8 1.6 9227 chr2R 11009800 intron luna - chr2R 11014414 intron luna - chr2R 11019027 intron luna - chr2R_6_11010001 chr2R_11010001 RAL-359 733 chr2R 11071544 11071589 chr2R 11071667 11071714 9 123 2.0 0.0 1.0 4.5 170 chr2R 11071544 intron luna - chr2R 11071629 intron luna - chr2R 11071714 intron luna - chr2R_9_11070001 chr2R_11070001 RAL-359 734 chr2R 11111143 11111179 chr2R 11111292 11111336 8 152 7.5 4.5 6.0 1.1 193 chr2R 11111143 intron luna - chr2R 11111240 intron luna - chr2R 11111336 intron luna - chr2R_8_11110001 chr2R_11110001 RAL-359 735 chr2R 11179250 11179268 chr2R 11179356 11179374 7 106 8.5 5.0 6.8 0.9 124 chr2R 11179250 intron shn + chr2R 11179312 intron shn + chr2R 11179374 intron shn + chr2R_7_11175001 chr2R_11175001 RAL-359 736 chr2R 11191899 11191919 chr2R 11192385 11192430 4 507 2.0 5.5 3.8 0.8 531 chr2R 11191899 intron shn + chr2R 11192164 intron shn + chr2R 11192430 intron shn + chr2R_4_11190001 chr2R_11190001 RAL-359 737 chr2R 11207804 11207842 chr2R 11208016 11208055 BS 14 210 4.0 2.0 3.0 3.5 251 chr2R 11207804 intron shn + chr2R 11207930 intron shn + chr2R 11208055 intron shn + chr2R_14_11205001 chr2R_11205001 RAL-359 738 chr2R 11297623 11297651 chr2R 11301964 11301992 flea 8 4340 4.5 0.0 2.2 2.5 4369 chr2R 11297623 intergenic CG42336 - chr2R 11299808 intergenic not near genes chr2R 11301992 5` UTR CG7741 + chr2R_8_11295001 chr2R_11295001 RAL-359 739 chr2R 11344147 11344159 chr2R 11344263 11344275 5 116 0.0 7.0 3.5 1.1 128 chr2R 11344147 intergenic alphaTry - chr2R 11344211 intergenic alphaTry - chr2R 11344275 3` UTR alphaTry - chr2R_5_11340001 chr2R_11340001 RAL-359 740 chr2R 11415504 11415547 chr2R 11418673 11418705 opus 10 3167 3.0 3.5 3.2 2.4 3201 chr2R 11415504 intron Drip - chr2R 11417104 intron Drip - chr2R 11418705 intron Drip - chr2R_10_11415001 chr2R_11415001 RAL-359 741 chr2R 11425672 11425711 chr2R 11425821 11425857 4 147 2.0 4.0 3.0 1.0 185 chr2R 11425672 intron Drip - chr2R 11425764 intron Drip - chr2R 11425857 intron Drip - chr2R_4_11425001 chr2R_11425001 RAL-359 742 chr2R 11472643 11472680 chr2R 11473848 11473897 pogo 20 1215 6.0 4.5 5.2 3.2 1254 chr2R 11472643 intergenic not near genes chr2R 11473270 intergenic not near genes chr2R 11473897 intergenic not near genes chr2R_20_11470001 chr2R_11470001 RAL-359 743 chr2R 11568677 11568705 chr2R 11568807 11568835 4 130 0.0 2.5 1.2 1.8 158 chr2R 11568677 intergenic not near genes chr2R 11568756 intergenic not near genes chr2R 11568835 intergenic not near genes chr2R_4_11565001 chr2R_11565001 RAL-359 744 chr2R 11614756 11614779 chr2R 11614864 11614887 4 108 5.0 4.5 4.8 0.7 131 chr2R 11614756 intron tou - chr2R 11614822 intron tou - chr2R 11614887 intron tou - chr2R_4_11610001 chr2R_11610001 RAL-359 745 chr2R 11630476 11630509 chr2R 11630910 11630935 6 434 3.0 3.5 3.2 1.4 459 chr2R 11630476 intron CG9005 - chr2R 11630706 intron CG9005 - chr2R 11630935 intron CG9005 - chr2R_6_11630001 chr2R_11630001 RAL-359 746 chr2R 11637309 11637328 chr2R 11637405 11637418 4 90 3.0 3.0 3.0 1.0 109 chr2R 11637309 intron CG9005 - chr2R 11637364 intron CG9005 - chr2R 11637418 intron CG9005 - chr2R_4_11635001 chr2R_11635001 RAL-359 747 chr2R 11677851 11677882 chr2R 11677949 11677959 6 93 4.0 2.0 3.0 1.5 108 chr2R 11677851 intron,exon Roc2 -,Tret1-2 + chr2R 11677905 intron,3` UTR Roc2 -,Tret1-2 + chr2R 11677959 intron,3` UTR Roc2 -,Tret1-2 + chr2R_6_11675001 chr2R_11675001 RAL-359 748 chr2R 11683430 11683468 chr2R 11683534 11683572 6 102 2.0 1.5 1.8 2.1 142 chr2R 11683430 intron Buffy + chr2R 11683501 intron Buffy + chr2R 11683572 intron Buffy + chr2R_6_11680001 chr2R_11680001 RAL-359 749 chr2R 11724141 11724183 chr2R 11724240 11724286 8 102 3.0 2.5 2.8 2.1 145 chr2R 11724141 intron pyr + chr2R 11724214 intron pyr + chr2R 11724286 intron pyr + chr2R_8_11720001 chr2R_11720001 RAL-359 750 chr2R 11847580 11847611 chr2R 11848407 11848434 6 825 3.0 5.0 4.0 1.2 854 chr2R 11847580 intron Sln + chr2R 11848007 intron Sln + chr2R 11848434 intron Sln + chr2R_6_11845001 chr2R_11845001 RAL-359 751 chr2R 12103240 12103290 chr2R 12103528 12103575 7 280 3.5 1.5 2.5 2.0 335 chr2R 12103240 intron jeb - chr2R 12103408 intron jeb - chr2R 12103575 intron jeb - chr2R_7_12100001 chr2R_12100001 RAL-359 752 chr2R 12104677 12104696 chr2R 12104760 12104793 5 92 6.0 2.5 4.2 1.0 116 chr2R 12104677 intron jeb - chr2R 12104735 intron jeb - chr2R 12104793 intron jeb - chr2R_5_12100001 chr2R_12100001 RAL-359 753 chr2R 12185980 12186037 chr2R 12186095 12186152 30 114 4.5 5.5 5.0 5.0 172 chr2R 12185980 intron Cyp6g1 + chr2R 12186066 intron Cyp6g1 + chr2R 12186152 intron Cyp6g1 + chr2R_30_12185001 chr2R_12185001 RAL-359 754 chr2R 12185224 12185239 chr2R 12188129 12188144 8 2905 33.5 142.0 87.8 0.1 2920 chr2R 12185224 3` UTR,exon CG13175 +,CG33964 + chr2R 12186684 exon Cyp6g1 + chr2R 12188144 3` UTR Cyp6g1 + chr2R_8_12185001 chr2R_12185001 RAL-359 755 chr2R 12187476 12187490 chr2R 12190072 12190086 4 2596 75.5 52.5 64.0 0.1 2610 chr2R 12187476 exon Cyp6g1 + chr2R 12188781 exon Cyp6g2 - chr2R 12190086 exon Cyp6g2 - chr2R_4_12185001 chr2R_12185001 RAL-359 756 chr2R 12187472 12187472 chr2R 12190088 12190118 20 2608 55.5 43.5 49.5 0.4 2646 chr2R 12187472 exon Cyp6g1 + chr2R 12188795 exon Cyp6g2 - chr2R 12190118 exon Cyp6g2 - chr2R_20_12185001 chr2R_12185001 RAL-359 757 chr2R 12334869 12334886 chr2R 12334967 12334984 7 98 4.5 4.5 4.5 1.3 115 chr2R 12334869 intergenic CG8490 + chr2R 12334926 intergenic CG8490 + chr2R 12334984 intergenic CG8490 + chr2R_7_12330001 chr2R_12330001 RAL-359 758 chr2R 12363364 12363408 chr2R 12363816 12363859 13 448 7.0 0.5 3.8 2.7 495 chr2R 12363364 intergenic CG30043 + chr2R 12363612 intergenic CG30043 + chr2R 12363859 intergenic not near genes chr2R_13_12360001 chr2R_12360001 RAL-359 759 chr2R 12385339 12385374 chr2R 12385435 12385475 6 100 0.5 1.0 0.8 3.3 136 chr2R 12385339 intergenic not near genes chr2R 12385407 intergenic not near genes chr2R 12385475 intergenic not near genes chr2R_6_12385001 chr2R_12385001 RAL-359 760 chr2R 12676824 12676847 chr2R 12676926 12676949 4 102 4.5 5.0 4.8 0.7 125 chr2R 12676824 intron CG42708 - chr2R 12676886 intron CG42708 - chr2R 12676949 intron CG42708 - chr2R_4_12675001 chr2R_12675001 RAL-359 761 chr2R 12728850 12728905 chr2R 12728973 12729023 8 120 0.0 2.5 1.2 3.6 173 chr2R 12728850 intron CG42663 + chr2R 12728936 intron CG42663 + chr2R 12729023 intron CG42663 + chr2R_8_12725001 chr2R_12725001 RAL-359 762 chr2R 12789279 12789315 chr2R 12797662 12797697 roo 6 8370 2.0 1.5 1.8 2.1 8418 chr2R 12789279 intron,3` UTR sca +,CR45137 - chr2R 12793488 intron,intron sca +,CR45137 - chr2R 12797697 intron,3` UTR sca +,CR45137 - chr2R_6_12790001 chr2R_12790001 RAL-359 763 chr2R 12807988 12808026 chr2R 12808130 12808168 14 141 6.5 1.0 3.8 2.9 180 chr2R 12807988 intergenic CG17580 + chr2R 12808078 intergenic CG17580 + chr2R 12808168 intergenic CG17580 + chr2R_14_12805001 chr2R_12805001 RAL-359 764 chr2R 12819445 12819479 chr2R 12824534 12824568 jockey 6 5088 3.0 2.0 2.5 1.7 5123 chr2R 12819445 intergenic not near genes chr2R 12822006 intergenic not near genes chr2R 12824568 intergenic not near genes chr2R_6_12820001 chr2R_12820001 RAL-359 765 chr2R 12855575 12855624 chr2R 12855674 12855723 14 98 4.0 1.5 2.8 3.7 148 chr2R 12855575 intron CG17574 - chr2R 12855649 intron CG17574 - chr2R 12855723 intron CG17574 - chr2R_14_12855001 chr2R_12855001 RAL-359 766 chr2R 12879214 12879263 chr2R 12879313 12879362 7 97 3.0 1.5 2.2 2.2 148 chr2R 12879214 intron,5` UTR Aats-asp +,Nmda1 - chr2R 12879288 intron,intron Aats-asp +,Nmda1 - chr2R 12879362 intron,intron Aats-asp +,Nmda1 - chr2R_7_12875001 chr2R_12875001 RAL-359 767 chr2R 12897464 12897482 chr2R 12897554 12897593 6 108 0.0 0.0 0.0 6.0 129 chr2R 12897464 intron vg + chr2R 12897528 intron vg + chr2R 12897593 intron vg + chr2R_6_12895001 chr2R_12895001 RAL-359 768 chr2R 13043032 13043063 chr2R 13043132 13043162 4 100 2.5 2.5 2.5 1.1 130 chr2R 13043032 intergenic not near genes chr2R 13043097 intergenic not near genes chr2R 13043162 intergenic not near genes chr2R_4_13040001 chr2R_13040001 RAL-359 769 chr2R 13125696 13125704 chr2R 13125799 13125801 4 102 1.0 7.0 4.0 0.8 105 chr2R 13125696 exon CG13325 + chr2R 13125748 3` UTR CG13325 + chr2R 13125801 intergenic CG13325 + chr2R_4_13125001 chr2R_13125001 RAL-359 770 chr2R 13136822 13136860 chr2R 13141640 13141678 Doc 12 4818 5.5 5.0 5.2 1.9 4856 chr2R 13136822 exon Cap-G + chr2R 13139250 intron Cap-G + chr2R 13141678 intron Cap-G + chr2R_12_13135001 chr2R_13135001 RAL-359 771 chr2R 13167390 13167402 chr2R 13167491 13167504 7 102 9.0 3.5 6.2 1.0 114 chr2R 13167390 intron GLaz - chr2R 13167447 intron GLaz - chr2R 13167504 intron GLaz - chr2R_7_13165001 chr2R_13165001 RAL-359 772 chr2R 13170702 13170745 chr2R 13170811 13170819 13 105 2.5 5.5 4.0 2.6 117 chr2R 13170702 3` UTR,3` UTR Spt-I +,CR45142 - chr2R 13170760 intergenic CR45142 -,Spt-I + chr2R 13170819 intergenic CR45142 -,Spt-I + chr2R_13_13170001 chr2R_13170001 RAL-359 773 chr2R 13305479 13305508 chr2R 13305581 13305605 7 100 12.0 6.0 9.0 0.7 126 chr2R 13305479 intergenic not near genes chr2R 13305542 intergenic not near genes chr2R 13305605 intergenic not near genes chr2R_7_13305001 chr2R_13305001 RAL-359 774 chr2R 13364689 13364731 chr2R 13364794 13364837 7 106 2.0 3.0 2.5 2.0 148 chr2R 13364689 intergenic not near genes chr2R 13364763 intergenic not near genes chr2R 13364837 intergenic not near genes chr2R_7_13360001 chr2R_13360001 RAL-359 775 chr2R 13389017 13389068 chr2R 13389297 13389348 15 283 27.0 25.0 26.0 0.6 331 chr2R 13389017 intergenic CG43691 - chr2R 13389182 intergenic CG43691 - chr2R 13389348 intergenic CG43691 - chr2R_15_13385001 chr2R_13385001 RAL-359 776 chr2R 13403909 13403937 chr2R 13404014 13404042 7 104 2.0 1.5 1.8 2.5 133 chr2R 13403909 intergenic not near genes chr2R 13403976 intergenic not near genes chr2R 13404042 intergenic not near genes chr2R_7_13400001 chr2R_13400001 RAL-359 777 chr2R 13423663 13423689 chr2R 13423762 13423788 7 99 1.5 3.5 2.5 2.0 125 chr2R 13423663 intron CG42321 - chr2R 13423726 intron CG42321 - chr2R 13423788 intron CG42321 - chr2R_7_13420001 chr2R_13420001 RAL-359 778 chr2R 13431473 13431508 chr2R 13431572 13431607 10 99 4.5 0.0 2.2 3.1 134 chr2R 13431473 intron CG42321 - chr2R 13431540 intron CG42321 - chr2R 13431607 intron CG42321 - chr2R_10_13430001 chr2R_13430001 RAL-359 779 chr2R 13439091 13439139 chr2R 13439226 13439226 7 128 3.5 2.5 3.0 1.8 135 chr2R 13439091 intergenic CG42321 -,cnn - chr2R 13439158 intergenic CG42321 -,cnn - chr2R 13439226 intergenic cnn -,CG42321 - chr2R_7_13435001 chr2R_13435001 RAL-359 780 chr2R 13449097 13449112 chr2R 13449211 13449226 9 113 8.5 5.5 7.0 1.1 129 chr2R 13449097 intron cnn - chr2R 13449162 intron cnn - chr2R 13449226 intron cnn - chr2R_9_13445001 chr2R_13445001 RAL-359 781 chr2R 13532497 13532541 chr2R 13532633 13532676 7 136 1.0 4.0 2.5 2.0 179 chr2R 13532497 intron Vmat - chr2R 13532586 intron Vmat - chr2R 13532676 intron Vmat - chr2R_7_13530001 chr2R_13530001 RAL-359 782 chr2R 13608255 13608302 chr2R 13608357 13608365 4 92 1.0 3.0 2.0 1.3 110 chr2R 13608255 intergenic CG12464 - chr2R 13608310 intergenic CG12464 - chr2R 13608365 intergenic CG12464 - chr2R_4_13605001 chr2R_13605001 RAL-359 783 chr2R 13648465 13648517 chr2R 13648671 13648723 5 200 3.0 0.0 1.5 2.0 258 chr2R 13648465 intron fas + chr2R 13648594 intron fas + chr2R 13648723 intron fas + chr2R_5_13645001 chr2R_13645001 RAL-359 784 chr2R 13721198 13721225 chr2R 13721300 13721314 5 96 5.5 5.5 5.5 0.8 116 chr2R 13721198 intron fas + chr2R 13721256 intron fas + chr2R 13721314 intron fas + chr2R_5_13720001 chr2R_13720001 RAL-359 785 chr2R 13768965 13769007 chr2R 13769079 13769121 6 111 2.5 7.0 4.8 1.0 156 chr2R 13768965 intergenic not near genes chr2R 13769043 intergenic not near genes chr2R 13769121 intergenic not near genes chr2R_6_13765001 chr2R_13765001 RAL-359 786 chr2R 13861418 13861449 chr2R 13861518 13861542 8 99 7.5 7.0 7.2 1.0 124 chr2R 13861418 intron CG16935 - chr2R 13861480 intron CG16935 - chr2R 13861542 intron CG16935 - chr2R_8_13860001 chr2R_13860001 RAL-359 787 chr2R 14018149 14018182 chr2R 14018253 14018286 10 104 6.5 8.0 7.2 1.2 137 chr2R 14018149 intron mam + chr2R 14018218 intron mam + chr2R 14018286 intron mam + chr2R_10_14015001 chr2R_14015001 RAL-359 788 chr2R 14277558 14277606 chr2R 14277660 14277708 12 102 5.0 6.0 5.5 1.8 150 chr2R 14277558 5` UTR Ih + chr2R 14277633 5` UTR Ih + chr2R 14277708 5` UTR Ih + chr2R_12_14275001 chr2R_14275001 RAL-359 789 chr2R 14285030 14285050 chr2R 14285147 14285167 8 116 3.0 4.0 3.5 1.8 137 chr2R 14285030 intron Ih + chr2R 14285098 intron Ih + chr2R 14285167 intron Ih + chr2R_8_14285001 chr2R_14285001 RAL-359 790 chr2R 14338737 14338786 chr2R 14338863 14338912 13 125 1.5 0.5 1.0 6.5 175 chr2R 14338737 intron Shroom + chr2R 14338824 intron Shroom + chr2R 14338912 intron Shroom + chr2R_13_14335001 chr2R_14335001 RAL-359 791 chr2R 14393853 14393896 chr2R 14393958 14394000 10 102 4.5 4.5 4.5 1.8 147 chr2R 14393853 intergenic not near genes chr2R 14393926 intergenic not near genes chr2R 14394000 intergenic not near genes chr2R_10_14390001 chr2R_14390001 RAL-359 792 chr2R 14455558 14455605 chr2R 14455684 14455730 7 125 2.5 2.5 2.5 2.0 172 chr2R 14455558 intron Oaz + chr2R 14455644 intron Oaz + chr2R 14455730 intron Oaz + chr2R_7_14455001 chr2R_14455001 RAL-359 793 chr2R 14467289 14467325 chr2R 14476443 14476496 roo 7 9167 3.5 3.5 3.5 1.6 9207 chr2R 14467289 intergenic not near genes chr2R 14471892 intergenic not near genes chr2R 14476496 5` UTR CR44462 + chr2R_7_14470001 chr2R_14470001 RAL-359 794 chr2R 14497372 14497416 chr2R 14498558 14498602 1360 11 1185 3.5 2.5 3.0 2.8 1230 chr2R 14497372 3` UTR Cpsf160 - chr2R 14497987 intron Cpsf160 - chr2R 14498602 3` UTR Cpsf160 - chr2R_11_14495001 chr2R_14495001 RAL-359 795 chr2R 14514448 14514498 chr2R 14514580 14514625 11 131 0.5 3.5 2.0 3.7 177 chr2R 14514448 intron,exon Cpr51A -,CG30197 + chr2R 14514536 intron,intron Cpr51A -,CG30197 + chr2R 14514625 intron,intron Cpr51A -,CG30197 + chr2R_11_14510001 chr2R_14510001 RAL-359 796 chr2R 14565544 14565591 chr2R 14565641 14565688 10 97 4.5 6.0 5.2 1.6 144 chr2R 14565544 intron ttv + chr2R 14565616 intron ttv + chr2R 14565688 intron ttv + chr2R_10_14565001 chr2R_14565001 RAL-359 797 chr2R 14566431 14566456 chr2R 14566538 14566563 5 107 5.5 3.0 4.2 1.0 132 chr2R 14566431 intron ttv + chr2R 14566497 intron ttv + chr2R 14566563 intron ttv + chr2R_5_14565001 chr2R_14565001 RAL-359 798 chr2R 14707056 14707080 chr2R 14707156 14707180 6 100 3.5 1.0 2.2 1.9 124 chr2R 14707056 intron mspo - chr2R 14707118 intron mspo - chr2R 14707180 intron mspo - chr2R_6_14705001 chr2R_14705001 RAL-359 799 chr2R 14733377 14733624 chr2R 14733481 14733723 6 99 2.0 1.0 1.5 2.4 346 chr2R 14733377 intergenic not near genes chr2R 14733550 intergenic not near genes chr2R 14733723 intergenic not near genes chr2R_6_14730001 chr2R_14730001 RAL-359 800 chr2R 14787611 14787654 chr2R 14787711 14787754 10 99 3.5 2.5 3.0 2.5 143 chr2R 14787611 intron kn - chr2R 14787682 intron kn - chr2R 14787754 intron kn - chr2R_10_14785001 chr2R_14785001 RAL-359 801 chr2R 14850044 14850088 chr2R 14850162 14850169 13 116 24.5 32.5 28.5 0.4 125 chr2R 14850044 exon SMC2 - chr2R 14850106 exon SMC2 - chr2R 14850169 exon SMC2 - chr2R_13_14850001 chr2R_14850001 RAL-359 802 chr2R 14873674 14873720 chr2R 14875209 14875258 8 1536 5.0 0.5 2.8 2.1 1584 chr2R 14873674 intergenic Cyp6a22 +,Cyp6a17 + chr2R 14874466 exon Cyp6a17 + chr2R 14875258 exon Cyp6a17 + chr2R_8_14870001 chr2R_14870001 RAL-359 803 chr2R 14875226 14875259 chr2R 14875658 14875691 6 431 0.5 3.5 2.0 2.0 465 chr2R 14875226 exon Cyp6a17 + chr2R 14875458 exon Cyp6a17 + chr2R 14875691 3` UTR Cyp6a17 + chr2R_6_14875001 chr2R_14875001 RAL-359 804 chr2R 14885872 14885921 chr2R 14885980 14886029 4 108 2.0 6.5 4.2 0.8 157 chr2R 14885872 exon Cyp6a21 - chr2R 14885950 exon Cyp6a21 - chr2R 14886029 exon Cyp6a21 - chr2R_4_14885001 chr2R_14885001 RAL-359 805 chr2R 14889193 14889214 chr2R 14897821 14897842 Max-element 14 8627 11.5 0.0 5.8 2.1 8649 chr2R 14889193 intergenic Cyp6a8 - chr2R 14893518 intergenic not near genes chr2R 14897842 intergenic not near genes chr2R_14_14890001 chr2R_14890001 RAL-359 806 chr2R 14911680 14911723 chr2R 14911823 14911866 17 143 1.5 3.0 2.2 5.3 186 chr2R 14911680 intron CG10249 - chr2R 14911773 intron CG10249 - chr2R 14911866 intron CG10249 - chr2R_17_14910001 chr2R_14910001 RAL-359 807 chr2R 14922141 14922168 chr2R 14922257 14922284 6 114 4.5 4.5 4.5 1.1 143 chr2R 14922141 intron CG10249 - chr2R 14922212 intron CG10249 - chr2R 14922284 intron CG10249 - chr2R_6_14920001 chr2R_14920001 RAL-359 808 chr2R 14957648 14957669 chr2R 14957763 14957784 6 115 2.0 2.0 2.0 2.0 136 chr2R 14957648 intron aPKC - chr2R 14957716 intron aPKC - chr2R 14957784 intron aPKC - chr2R_6_14955001 chr2R_14955001 RAL-359 809 chr2R 15001579 15001622 chr2R 15001694 15001737 10 115 3.0 6.5 4.8 1.7 158 chr2R 15001579 intergenic not near genes chr2R 15001658 intergenic not near genes chr2R 15001737 intergenic not near genes chr2R_10_15000001 chr2R_15000001 RAL-359 810 chr2R 15004707 15004749 chr2R 15005056 15005098 jockey 9 347 3.5 3.0 3.2 2.1 391 chr2R 15004707 intergenic not near genes chr2R 15004902 intergenic not near genes chr2R 15005098 intergenic not near genes chr2R_9_15000001 chr2R_15000001 RAL-359 811 chr2R 15015460 15015489 chr2R 15022903 15022933 mdg1 10 7443 0.5 8.0 4.2 1.9 7473 chr2R 15015460 intron hbs + chr2R 15019196 intron hbs + chr2R 15022933 intron hbs + chr2R_10_15015001 chr2R_15015001 RAL-359 812 chr2R 15084962 15084996 chr2R 15092030 15092065 297 6 7069 4.0 2.5 3.2 1.4 7103 chr2R 15084962 intergenic not near genes chr2R 15088514 intergenic not near genes chr2R 15092065 5` UTR CR44457 + chr2R_6_15085001 chr2R_15085001 RAL-359 813 chr2R 15119306 15119335 chr2R 15127799 15127830 Tirant 6 8494 4.0 3.5 3.8 1.2 8524 chr2R 15119306 intron chn + chr2R 15123568 intron chn + chr2R 15127830 intron chn + chr2R_6_15120001 chr2R_15120001 RAL-359 814 chr2R 15133474 15133503 chr2R 15133562 15133602 8 94 9.0 7.0 8.0 0.9 128 chr2R 15133474 intron chn + chr2R 15133538 intron chn + chr2R 15133602 intron chn + chr2R_8_15130001 chr2R_15130001 RAL-359 815 chr2R 15199511 15199781 chr2R 15199634 15199911 10 125 25.0 21.5 23.2 0.4 400 chr2R 15199511 exon GPHR - chr2R 15199711 exon GPHR - chr2R 15199911 exon GPHR - chr2R_10_15195001 chr2R_15195001 RAL-359 816 chr2R 15200026 15200281 chr2R 15200143 15200418 7 135 14.0 19.0 16.5 0.4 392 chr2R 15200026 exon GPHR - chr2R 15200222 exon GPHR - chr2R 15200418 exon GPHR - chr2R_7_15200001 chr2R_15200001 RAL-359 817 chr2R 15200522 15200551 chr2R 15200655 15200680 7 132 23.5 23.5 23.5 0.3 158 chr2R 15200522 exon GPHR - chr2R 15200601 intron GPHR - chr2R 15200680 exon GPHR - chr2R_7_15200001 chr2R_15200001 RAL-359 818 chr2R 15296149 15296364 chr2R 15296252 15296538 13 146 2.5 4.5 3.5 2.9 389 chr2R 15296149 intron Trpm - chr2R 15296344 intron Trpm - chr2R 15296538 intron Trpm - chr2R_13_15295001 chr2R_15295001 RAL-359 819 chr2R 15315702 15315753 chr2R 15315799 15315850 14 96 4.5 2.5 3.5 3.1 148 chr2R 15315702 exon mus210 + chr2R 15315776 exon mus210 + chr2R 15315850 exon mus210 + chr2R_14_15315001 chr2R_15315001 RAL-359 820 chr2R 15382683 15382729 chr2R 15382797 15382843 6 114 1.0 8.5 4.8 1.0 160 chr2R 15382683 intron SRPK + chr2R 15382763 intron SRPK + chr2R 15382843 intron SRPK + chr2R_6_15380001 chr2R_15380001 RAL-359 821 chr2R 15511120 15511167 chr2R 15511216 15511263 11 96 3.0 4.5 3.8 2.3 143 chr2R 15511120 intergenic not near genes chr2R 15511192 intergenic not near genes chr2R 15511263 intergenic GalNAc-T1 + chr2R_11_15510001 chr2R_15510001 RAL-359 822 chr2R 15679087 15679123 chr2R 15679191 15679227 7 104 8.0 5.0 6.5 0.9 140 chr2R 15679087 intergenic CG8207 -,Vha14-1 - chr2R 15679157 intergenic CG8207 -,Vha14-1 - chr2R 15679227 intergenic Vha14-1 -,CG8207 - chr2R_7_15675001 chr2R_15675001 RAL-359 823 chr2R 15685345 15685393 chr2R 15685467 15685509 7 122 5.5 1.5 3.5 1.6 164 chr2R 15685345 intron,exon Ranbp11 +,CG30082 - chr2R 15685427 intron,intron Ranbp11 +,CG30082 - chr2R 15685509 intron,intron Ranbp11 +,CG30082 - chr2R_7_15685001 chr2R_15685001 RAL-359 824 chr2R 15720750 15720798 chr2R 15720866 15720909 5 115 3.0 4.0 3.5 1.1 159 chr2R 15720750 intergenic not near genes chr2R 15720830 intergenic not near genes chr2R 15720909 intergenic not near genes chr2R_5_15720001 chr2R_15720001 RAL-359 825 chr2R 15794876 15794887 chr2R 15794986 15794997 4 110 0.0 0.0 0.0 4.0 121 chr2R 15794876 intron,5` UTR Zasp52 -,tun + chr2R 15794936 intron,5` UTR Zasp52 -,tun + chr2R 15794997 intron,intron Zasp52 -,tun + chr2R_4_15790001 chr2R_15790001 RAL-359 826 chr2R 16220168 16220200 chr2R 16220273 16220292 5 102 1.0 3.0 2.0 1.7 124 chr2R 16220168 intron mrj - chr2R 16220230 intron mrj - chr2R 16220292 intron mrj - chr2R_5_16220001 chr2R_16220001 RAL-359 827 chr2R 16429531 16429562 chr2R 16429736 16429768 5 207 25.0 24.5 24.8 0.2 237 chr2R 16429531 intron Sema-2b + chr2R 16429650 3` UTR Sema-2b + chr2R 16429768 3` UTR Sema-2b + chr2R_5_16425001 chr2R_16425001 RAL-359 828 chr2R 16614109 16614153 chr2R 16614348 16614392 9 238 2.0 2.5 2.2 2.8 283 chr2R 16614109 intron CG5065 + chr2R 16614250 intron CG5065 + chr2R 16614392 intron CG5065 + chr2R_9_16610001 chr2R_16610001 RAL-359 829 chr2R 16689132 16689176 chr2R 16689481 16689525 12 342 1.5 1.5 1.5 4.8 393 chr2R 16689132 intron CG30463 - chr2R 16689328 intron CG30463 - chr2R 16689525 intron CG30463 - chr2R_12_16685001 chr2R_16685001 RAL-359 830 chr2R 16713059 16713064 chr2R 16713163 16713168 6 104 0.0 3.0 1.5 2.4 109 chr2R 16713059 intron CG30463 - chr2R 16713114 intron CG30463 - chr2R 16713168 intron CG30463 - chr2R_6_16710001 chr2R_16710001 RAL-359 831 chr2R 16723905 16723950 chr2R 16724005 16724049 13 99 2.0 1.5 1.8 4.6 144 chr2R 16723905 intron CG30463 - chr2R 16723977 intron CG30463 - chr2R 16724049 intron CG30463 - chr2R_13_16720001 chr2R_16720001 RAL-359 832 chr2R 16775643 16775668 chr2R 16775926 16775955 5 286 6.0 8.5 7.2 0.6 312 chr2R 16775643 3` UTR Arp53D + chr2R 16775799 intergenic Arp53D + chr2R 16775955 intergenic Arp53D + chr2R_5_16775001 chr2R_16775001 RAL-359 833 chr2R 16779514 16779530 chr2R 16779698 16779706 7 183 0.0 6.0 3.0 1.8 192 chr2R 16779514 intergenic resilin + chr2R 16779610 intergenic resilin + chr2R 16779706 intergenic resilin + chr2R_7_16775001 chr2R_16775001 RAL-359 834 chr2R 17147231 17147261 chr2R 17152282 17152312 jockey 6 5051 3.0 6.5 4.8 1.0 5081 chr2R 17147231 intergenic not near genes chr2R 17149772 intergenic not near genes chr2R 17152312 intergenic not near genes chr2R_6_17145001 chr2R_17145001 RAL-359 835 chr2R 17227068 17227114 chr2R 17227167 17227213 6 100 2.0 2.0 2.0 2.0 145 chr2R 17227068 intron mbl + chr2R 17227140 intron mbl + chr2R 17227213 intron mbl + chr2R_6_17225001 chr2R_17225001 RAL-359 836 chr2R 17236491 17236534 chr2R 17241715 17241758 copia 7 5223 3.0 2.5 2.8 1.8 5267 chr2R 17236491 intron mbl + chr2R 17239124 intron mbl + chr2R 17241758 intron mbl + chr2R_7_17235001 chr2R_17235001 RAL-359 837 chr2R 17422881 17422912 chr2R 17422973 17423025 8 108 1.5 5.0 3.2 1.9 144 chr2R 17422881 intron l(2)k01209 + chr2R 17422953 intron l(2)k01209 + chr2R 17423025 intron l(2)k01209 + chr2R_8_17420001 chr2R_17420001 RAL-359 838 chr2R 17458991 17459034 chr2R 17459096 17459139 10 105 4.0 6.0 5.0 1.7 148 chr2R 17458991 intron CG14478 + chr2R 17459065 intron CG14478 + chr2R 17459139 intron CG14478 + chr2R_10_17455001 chr2R_17455001 RAL-359 839 chr2R 17479369 17479399 chr2R 17479632 17479662 9 263 17.5 20.5 19.0 0.5 293 chr2R 17479369 3` UTR,intron CG43110 -,veil + chr2R 17479516 3` UTR,intron CG43110 -,veil + chr2R 17479662 3` UTR,intron CG43110 -,veil + chr2R_9_17475001 chr2R_17475001 RAL-359 840 chr2R 17485894 17485943 chr2R 17490676 17490723 F-element 14 4780 4.0 0.0 2.0 4.7 4829 chr2R 17485894 5` UTR,intron CG43110 -,NT5E-2 + chr2R 17488308 intron NT5E-2 + chr2R 17490723 intron NT5E-2 + chr2R_14_17485001 chr2R_17485001 RAL-359 841 chr2R 17709972 17710087 chr2R 17710083 17710185 9 106 0.0 0.0 0.0 9.0 213 chr2R 17709972 intron CG6424 - chr2R 17710078 intron CG6424 - chr2R 17710185 intron CG6424 - chr2R_9_17710001 chr2R_17710001 RAL-359 842 chr2R 17764404 17764453 chr2R 17764527 17764576 15 123 2.5 6.0 4.2 2.9 172 chr2R 17764404 3` UTR CG5009 + chr2R 17764490 3` UTR CG5009 + chr2R 17764576 3` UTR OstDelta - chr2R_15_17760001 chr2R_17760001 RAL-359 843 chr2R 17782359 17782394 chr2R 17783582 17783614 pogo 11 1223 2.0 5.5 3.8 2.3 1255 chr2R 17782359 intergenic CG33981 -,fab1 - chr2R 17782986 intergenic not near genes chr2R 17783614 intergenic mir-31a - chr2R_11_17780001 chr2R_17780001 RAL-359 844 chr2R 17784014 17784046 chr2R 17784270 17784296 pogo 6 258 6.5 3.5 5.0 1.0 282 chr2R 17784014 intergenic mir-31a - chr2R 17784155 intergenic mir-31a - chr2R 17784296 intergenic mir-31a - chr2R_6_17780001 chr2R_17780001 RAL-359 845 chr2R 17822870 17822905 chr2R 17822968 17823003 13 98 5.5 3.5 4.5 2.4 133 chr2R 17822870 intron grh + chr2R 17822936 intron grh + chr2R 17823003 intron grh + chr2R_13_17820001 chr2R_17820001 RAL-359 846 chr2R 17911619 17911626 chr2R 17911710 17911722 4 95 0.0 0.0 0.0 4.0 103 chr2R 17911619 intron Elk + chr2R 17911670 intron Elk + chr2R 17911722 intron Elk + chr2R_4_17910001 chr2R_17910001 RAL-359 847 chr2R 17918163 17918196 chr2R 17918255 17918270 4 88 4.5 0.5 2.5 1.1 107 chr2R 17918163 intron Elk + chr2R 17918216 intron Elk + chr2R 17918270 intron Elk + chr2R_4_17915001 chr2R_17915001 RAL-359 848 chr2R 18045653 18045695 chr2R 18046025 18046067 jockey 9 372 2.5 3.0 2.8 2.4 414 chr2R 18045653 intergenic not near genes chr2R 18045860 intergenic not near genes chr2R 18046067 intergenic CG5767 - chr2R_9_18045001 chr2R_18045001 RAL-359 849 chr2R 18074593 18074620 chr2R 18074681 18074716 6 94 2.0 4.5 3.2 1.4 123 chr2R 18074593 intron CG34386 + chr2R 18074654 intron CG34386 + chr2R 18074716 intron CG34386 + chr2R_6_18070001 chr2R_18070001 RAL-359 850 chr2R 18075961 18075997 chr2R 18076075 18076111 5 114 4.5 5.5 5.0 0.8 150 chr2R 18075961 intron CG34386 + chr2R 18076036 intron CG34386 + chr2R 18076111 intron CG34386 + chr2R_5_18075001 chr2R_18075001 RAL-359 851 chr2R 18111693 18111709 chr2R 18115581 18115597 F-element 6 3888 4.0 9.0 6.5 0.8 3904 chr2R 18111693 intergenic not near genes chr2R 18113645 intergenic not near genes chr2R 18115597 intergenic not near genes chr2R_6_18110001 chr2R_18110001 RAL-359 852 chr2R 18189688 18189701 chr2R 18189801 18189814 6 113 2.5 0.0 1.2 2.7 126 chr2R 18189688 intron CG33958 - chr2R 18189751 intron CG33958 - chr2R 18189814 intron CG33958 - chr2R_6_18185001 chr2R_18185001 RAL-359 853 chr2R 18289412 18289452 chr2R 18289534 18289568 6 119 4.0 1.5 2.8 1.6 156 chr2R 18289412 intron,intron sbb -,CG14502 + chr2R 18289490 intron,intron sbb -,CG14502 + chr2R 18289568 exon,intron sbb -,CG14502 + chr2R_6_18285001 chr2R_18285001 RAL-359 854 chr2R 18308264 18308316 chr2R 18308390 18308442 9 126 4.5 2.5 3.5 2.0 178 chr2R 18308264 intron sbb - chr2R 18308353 intron sbb - chr2R 18308442 intron sbb - chr2R_9_18305001 chr2R_18305001 RAL-359 855 chr2R 18358377 18358413 chr2R 18372608 18372645 roo 10 14232 6.5 5.5 6.0 1.4 14268 chr2R 18358377 intergenic not near genes chr2R 18365511 intergenic not near genes chr2R 18372645 intergenic not near genes chr2R_10_18365001 chr2R_18365001 RAL-359 856 chr2R 18401653 18401701 chr2R 18402437 18402485 7 784 31.5 21.5 26.5 0.3 832 chr2R 18401653 intergenic GstE3 + chr2R 18402069 intergenic not near genes chr2R 18402485 intergenic not near genes chr2R_7_18400001 chr2R_18400001 RAL-359 857 chr2R 18405730 18405780 chr2R 18405831 18405880 5 101 3.5 0.5 2.0 1.7 150 chr2R 18405730 intergenic GstE6 +,GstE5 + chr2R 18405805 intergenic GstE6 +,GstE5 + chr2R 18405880 intergenic GstE6 + chr2R_5_18405001 chr2R_18405001 RAL-359 858 chr2R 18486826 18486838 chr2R 18487108 18487113 5 281 15.5 5.5 10.5 0.4 287 chr2R 18486826 intron CG30116 - chr2R 18486970 intron CG30116 - chr2R 18487113 intron CG30116 - chr2R_5_18485001 chr2R_18485001 RAL-359 859 chr2R 18486840 18486874 chr2R 18487107 18487156 12 279 9.0 5.5 7.2 1.5 316 chr2R 18486840 intron CG30116 - chr2R 18486998 intron CG30116 - chr2R 18487156 intron CG30116 - chr2R_12_18485001 chr2R_18485001 RAL-359 860 chr2R 18528181 18528205 chr2R 18528285 18528309 7 99 6.5 3.5 5.0 1.2 128 chr2R 18528181 intron CG10924 + chr2R 18528245 intron CG10924 + chr2R 18528309 intron CG10924 + chr2R_7_18525001 chr2R_18525001 RAL-359 861 chr2R 18532019 18532061 chr2R 18532126 18532139 4 98 4.0 2.0 3.0 1.0 120 chr2R 18532019 intron CG10924 + chr2R 18532079 intron CG10924 + chr2R 18532139 intron CG10924 + chr2R_4_18530001 chr2R_18530001 RAL-359 862 chr2R 18534888 18534934 chr2R 18535227 18535261 18 335 3.0 2.0 2.5 5.1 373 chr2R 18534888 3` UTR CG10924 + chr2R 18535074 3` UTR CG10924 + chr2R 18535261 3` UTR CG10924 + chr2R_18_18535001 chr2R_18535001 RAL-359 863 chr2R 18575811 18575822 chr2R 18581994 18582030 3S18 4 6196 2.5 5.0 3.8 0.8 6219 chr2R 18575811 intron GEFmeso - chr2R 18578920 intron GEFmeso - chr2R 18582030 intron GEFmeso - chr2R_4_18575001 chr2R_18575001 RAL-359 864 chr2R 18590870 18590900 chr2R 18600041 18600072 roo 4 9170 5.0 3.0 4.0 0.8 9202 chr2R 18590870 intron GEFmeso - chr2R 18595471 intron GEFmeso - chr2R 18600072 intron GEFmeso - chr2R_4_18595001 chr2R_18595001 RAL-359 865 chr2R 18675160 18675170 chr2R 18675258 18675268 5 98 0.0 7.0 3.5 1.1 108 chr2R 18675160 intergenic not near genes chr2R 18675214 intergenic not near genes chr2R 18675268 intergenic not near genes chr2R_5_18675001 chr2R_18675001 RAL-359 866 chr2R 18678520 18678538 chr2R 18678653 18678655 6 135 4.0 0.0 2.0 2.0 135 chr2R 18678520 intergenic CG44434 -,CG44435 - chr2R 18678588 intergenic CG44434 -,CG44435 - chr2R 18678655 intergenic CG44434 -,CG44435 - chr2R_6_18675001 chr2R_18675001 RAL-359 867 chr2R 18692884 18692906 chr2R 18692991 18693013 10 107 5.0 3.5 4.2 1.9 129 chr2R 18692884 intron Sik3 + chr2R 18692948 intron Sik3 + chr2R 18693013 intron Sik3 + chr2R_10_18690001 chr2R_18690001 RAL-359 868 chr2R 18725523 18725559 chr2R 18728198 18728239 10 2678 22.0 20.5 21.2 0.5 2716 chr2R 18725523 intron Hs3st-A + chr2R 18726881 intron Hs3st-A + chr2R 18728239 intron,intron Hs3st-A +,List - chr2R_10_18725001 chr2R_18725001 RAL-359 869 chr2R 18725520 18725546 chr2R 18729230 18729266 11 3713 21.5 27.0 24.2 0.4 3746 chr2R 18725520 intron Hs3st-A + chr2R 18727393 intron Hs3st-A + chr2R 18729266 intron,exon Hs3st-A +,List - chr2R_11_18725001 chr2R_18725001 RAL-359 870 chr2R 18732341 18732370 chr2R 18732493 18732524 4 148 3.0 3.5 3.2 1.0 183 chr2R 18732341 intron Hs3st-A + chr2R 18732432 intron Hs3st-A + chr2R 18732524 intron Hs3st-A + chr2R_4_18730001 chr2R_18730001 RAL-359 871 chr2R 18769636 18769730 chr2R 18769917 18769954 4 240 0.0 4.0 2.0 1.3 318 chr2R 18769636 intron Mctp + chr2R 18769795 intron Mctp + chr2R 18769954 intron Mctp + chr2R_4_18765001 chr2R_18765001 RAL-359 872 chr2R 18778597 18778602 chr2R 18778715 18778719 4 118 3.5 1.0 2.2 1.2 122 chr2R 18778597 intergenic not near genes chr2R 18778658 intergenic not near genes chr2R 18778719 intergenic not near genes chr2R_4_18775001 chr2R_18775001 RAL-359 873 chr2R 18785905 18785941 chr2R 18786004 18786040 9 99 1.5 2.5 2.0 3.0 135 chr2R 18785905 intron CG15080 + chr2R 18785972 intron CG15080 + chr2R 18786040 intron CG15080 + chr2R_9_18785001 chr2R_18785001 RAL-359 874 chr2R 18835880 18835893 chr2R 18835982 18835995 4 102 5.5 0.0 2.8 1.1 115 chr2R 18835880 intron CG15083 + chr2R 18835938 intron CG15083 + chr2R 18835995 intron CG15083 + chr2R_4_18835001 chr2R_18835001 RAL-359 875 chr2R 18862424 18862456 chr2R 18862521 18862553 5 97 2.0 0.0 1.0 2.5 129 chr2R 18862424 intergenic Jheh3 -,CG43069 + chr2R 18862488 intergenic CG43069 +,Jheh3 - chr2R 18862553 intergenic CG43069 +,Jheh3 - chr2R_5_18860001 chr2R_18860001 RAL-359 876 chr2R 18930435 18930484 chr2R 18930548 18930597 14 113 2.5 2.5 2.5 4.0 162 chr2R 18930435 intron sano + chr2R 18930516 intron sano + chr2R 18930597 intron sano + chr2R_14_18930001 chr2R_18930001 RAL-359 877 chr2R 18953141 18953189 chr2R 18953248 18953296 7 107 2.5 1.5 2.0 2.3 155 chr2R 18953141 intron sano + chr2R 18953218 intron sano + chr2R 18953296 intron sano + chr2R_7_18950001 chr2R_18950001 RAL-359 878 chr2R 18964916 18964948 chr2R 18965012 18965044 8 96 3.0 6.5 4.8 1.4 128 chr2R 18964916 intergenic not near genes chr2R 18964980 intergenic not near genes chr2R 18965044 intergenic not near genes chr2R_8_18960001 chr2R_18960001 RAL-359 879 chr2R 18988997 18989029 chr2R 18989095 18989127 9 98 0.5 1.0 0.8 5.0 130 chr2R 18988997 intron tn + chr2R 18989062 intron tn + chr2R 18989127 intron tn + chr2R_9_18985001 chr2R_18985001 RAL-359 880 chr2R 19026033 19026047 chr2R 19026154 19026168 4 121 11.5 4.5 8.0 0.4 135 chr2R 19026033 intron 5-HT1B - chr2R 19026100 intron 5-HT1B - chr2R 19026168 intron 5-HT1B - chr2R_4_19025001 chr2R_19025001 RAL-359 881 chr2R 19067734 19067749 chr2R 19067830 19067845 4 96 2.5 1.0 1.8 1.4 111 chr2R 19067734 intron 5-HT1A + chr2R 19067790 intron 5-HT1A + chr2R 19067845 intron 5-HT1A + chr2R_4_19065001 chr2R_19065001 RAL-359 882 chr2R 19072099 19072112 chr2R 19072190 19072194 4 90 6.0 4.5 5.2 0.6 95 chr2R 19072099 intron 5-HT1A + chr2R 19072146 intron 5-HT1A + chr2R 19072194 intron 5-HT1A + chr2R_4_19070001 chr2R_19070001 RAL-359 883 chr2R 19096480 19096534 chr2R 19096651 19096705 9 167 3.5 3.5 3.5 2.0 225 chr2R 19096480 exon 5-HT1A + chr2R 19096592 intron 5-HT1A + chr2R 19096705 intron 5-HT1A + chr2R_9_19095001 chr2R_19095001 RAL-359 884 chr2R 19103390 19103426 chr2R 19103500 19103528 5 105 3.5 1.5 2.5 1.4 138 chr2R 19103390 intron 5-HT1A + chr2R 19103459 intron 5-HT1A + chr2R 19103528 intron 5-HT1A + chr2R_5_19100001 chr2R_19100001 RAL-359 885 chr2R 19109701 19109741 chr2R 19109881 19109929 8 179 4.5 3.5 4.0 1.6 228 chr2R 19109701 intron 5-HT1A + chr2R 19109815 intron 5-HT1A + chr2R 19109929 intron 5-HT1A + chr2R_8_19105001 chr2R_19105001 RAL-359 886 chr2R 19200452 19200496 chr2R 19200554 19200598 9 102 3.5 4.0 3.8 1.9 146 chr2R 19200452 intron hppy + chr2R 19200525 intron hppy + chr2R 19200598 intron hppy + chr2R_9_19200001 chr2R_19200001 RAL-359 887 chr2R 19253075 19253127 chr2R 19253185 19253237 15 110 4.5 2.5 3.5 3.3 162 chr2R 19253075 intron CG33453 - chr2R 19253156 exon CG33453 - chr2R 19253237 intergenic CG33453 - chr2R_15_19250001 chr2R_19250001 RAL-359 888 chr2R 19274630 19274680 chr2R 19274900 19274950 6 270 1.5 4.0 2.8 1.6 320 chr2R 19274630 intron rib + chr2R 19274790 intron rib + chr2R 19274950 intron rib + chr2R_6_19270001 chr2R_19270001 RAL-359 889 chr2R 19300943 19300983 chr2R 19301046 19301086 8 102 2.0 5.5 3.8 1.7 143 chr2R 19300943 intron Tab2 + chr2R 19301014 intron Tab2 + chr2R 19301086 intron Tab2 + chr2R_8_19300001 chr2R_19300001 RAL-359 890 chr2R 19385097 19385137 chr2R 19385660 19385700 8 563 0.0 2.5 1.2 3.6 603 chr2R 19385097 intergenic CG10073 + chr2R 19385398 intergenic CG10073 + chr2R 19385700 intergenic CG10081 + chr2R_8_19385001 chr2R_19385001 RAL-359 891 chr2R 19644642 19644687 chr2R 19644746 19644792 11 104 3.0 3.5 3.2 2.6 150 chr2R 19644642 intergenic not near genes chr2R 19644717 intergenic not near genes chr2R 19644792 intergenic not near genes chr2R_11_19640001 chr2R_19640001 RAL-359 892 chr2R 19715836 19715857 chr2R 19723325 19723337 blood 5 7486 9.0 3.5 6.2 0.7 7501 chr2R 19715836 intergenic not near genes chr2R 19719586 intergenic not near genes chr2R 19723337 intergenic not near genes chr2R_5_19715001 chr2R_19715001 RAL-359 893 chr2R 19776576 19776618 chr2R 19779918 19779961 jockey 5 3343 4.0 5.0 4.5 0.9 3385 chr2R 19776576 intergenic not near genes chr2R 19778268 intergenic not near genes chr2R 19779961 intergenic not near genes chr2R_5_19775001 chr2R_19775001 RAL-359 894 chr2R 19914828 19914874 chr2R 19922260 19922306 mdg1 7 7432 3.0 1.5 2.2 2.2 7478 chr2R 19914828 intergenic not near genes chr2R 19918567 intergenic not near genes chr2R 19922306 intergenic not near genes chr2R_7_19915001 chr2R_19915001 RAL-359 895 chr2R 19957430 19957464 chr2R 19962637 19962640 copia 4 5201 3.5 2.5 3.0 1.0 5210 chr2R 19957430 intergenic CG44623 + chr2R 19960035 intergenic not near genes chr2R 19962640 intergenic not near genes chr2R_4_19960001 chr2R_19960001 RAL-359 896 chr2R 20080599 20080615 chr2R 20080696 20080712 5 97 0.0 9.0 4.5 0.9 113 chr2R 20080599 intergenic not near genes chr2R 20080656 intergenic not near genes chr2R 20080712 intergenic not near genes chr2R_5_20080001 chr2R_20080001 RAL-359 897 chr2R 20125724 20125749 chr2R 20125820 20125844 15 96 2.5 7.0 4.8 2.6 120 chr2R 20125724 intergenic not near genes chr2R 20125784 intergenic not near genes chr2R 20125844 intergenic not near genes chr2R_15_20125001 chr2R_20125001 RAL-359 898 chr2R 20186083 20186127 chr2R 20186187 20186231 10 102 1.5 4.5 3.0 2.5 148 chr2R 20186083 intergenic not near genes chr2R 20186157 intergenic not near genes chr2R 20186231 intergenic not near genes chr2R_10_20185001 chr2R_20185001 RAL-359 899 chr2R 20405065 20405112 chr2R 20405998 20406038 9 932 4.5 2.5 3.5 2.0 973 chr2R 20405065 intergenic not near genes chr2R 20405552 intergenic not near genes chr2R 20406038 intergenic not near genes chr2R_9_20405001 chr2R_20405001 RAL-359 900 chr2R 20449221 20449254 chr2R 20449317 20449350 10 94 6.0 4.0 5.0 1.7 129 chr2R 20449221 intron CG12484 + chr2R 20449286 intron CG12484 + chr2R 20449350 intron CG12484 + chr2R_10_20445001 chr2R_20445001 RAL-359 901 chr2R 20523031 20523070 chr2R 20523150 20523188 5 123 3.0 3.0 3.0 1.2 157 chr2R 20523031 intergenic not near genes chr2R 20523110 intergenic not near genes chr2R 20523188 intergenic not near genes chr2R_5_20520001 chr2R_20520001 RAL-359 902 chr2R 20541968 20542017 chr2R 20542066 20542115 9 98 4.5 5.5 5.0 1.5 147 chr2R 20541968 intergenic not near genes chr2R 20542042 intergenic not near genes chr2R 20542115 intergenic not near genes chr2R_9_20540001 chr2R_20540001 RAL-359 903 chr2R 20599005 20599035 chr2R 20599965 20599986 6 959 4.5 5.0 4.8 1.0 981 chr2R 20599005 intron bl + chr2R 20599496 intron bl + chr2R 20599986 intron bl + chr2R_6_20595001 chr2R_20595001 RAL-359 904 chr2R 20690743 20690781 chr2R 20690836 20690876 4 95 4.5 3.0 3.8 0.8 133 chr2R 20690743 intergenic not near genes chr2R 20690810 intergenic not near genes chr2R 20690876 intergenic not near genes chr2R_4_20690001 chr2R_20690001 RAL-359 905 chr2R 20739426 20739471 chr2R 20744213 20744249 F-element 5 4786 1.5 3.0 2.2 1.6 4823 chr2R 20739426 intron dpr + chr2R 20741838 intron dpr + chr2R 20744249 intron dpr + chr2R_5_20740001 chr2R_20740001 RAL-359 906 chr2R 20783291 20783319 chr2R 20788083 20788111 F-element 12 4791 4.5 4.5 4.5 2.2 4820 chr2R 20783291 intergenic not near genes chr2R 20785701 intergenic not near genes chr2R 20788111 intergenic CG43666 - chr2R_12_20785001 chr2R_20785001 RAL-359 907 chr2R 20826941 20826977 chr2R 20827060 20827097 7 120 5.0 5.0 5.0 1.2 156 chr2R 20826941 intron insc - chr2R 20827019 intron insc - chr2R 20827097 intron insc - chr2R_7_20825001 chr2R_20825001 RAL-359 908 chr2R 20830525 20830566 chr2R 20830615 20830666 17 99 6.5 5.0 5.8 2.5 141 chr2R 20830525 intron,intron insc -,sktl - chr2R 20830596 intron,intron insc -,sktl - chr2R 20830666 intron,intron insc -,sktl - chr2R_17_20830001 chr2R_20830001 RAL-359 909 chr2R 20862313 20862348 chr2R 20862427 20862462 6 111 2.0 12.0 7.0 0.8 149 chr2R 20862313 intergenic not near genes chr2R 20862388 intergenic not near genes chr2R 20862462 intergenic not near genes chr2R_6_20860001 chr2R_20860001 RAL-359 910 chr2R 20863099 20863139 chr2R 20863205 20863222 7 102 6.0 0.5 3.2 1.7 123 chr2R 20863099 intergenic not near genes chr2R 20863160 intergenic not near genes chr2R 20863222 intergenic not near genes chr2R_7_20860001 chr2R_20860001 RAL-359 911 chr2R 20962888 20962936 chr2R 20963005 20963054 11 116 3.0 6.0 4.5 2.0 166 chr2R 20962888 intergenic not near genes chr2R 20962971 intergenic not near genes chr2R 20963054 intergenic not near genes chr2R_11_20960001 chr2R_20960001 RAL-359 912 chr2R 21113459 21113485 chr2R 21113568 21113594 7 109 7.0 5.0 6.0 1.0 135 chr2R 21113459 intron ktub + chr2R 21113526 intron ktub + chr2R 21113594 intron ktub + chr2R_7_21110001 chr2R_21110001 RAL-359 913 chr2R 21193983 21194022 chr2R 21194088 21194127 11 105 4.5 7.5 6.0 1.6 144 chr2R 21193983 intron Lapsyn + chr2R 21194055 intron Lapsyn + chr2R 21194127 intron Lapsyn + chr2R_11_21190001 chr2R_21190001 RAL-359 914 chr2R 21237211 21237237 chr2R 21237374 21237400 11 163 3.0 4.0 3.5 2.4 189 chr2R 21237211 intron ASPP - chr2R 21237306 intron ASPP - chr2R 21237400 intron ASPP - chr2R_11_21235001 chr2R_21235001 RAL-359 915 chr2R 21738260 21738305 chr2R 21747440 21747449 roo 6 9171 0.5 2.0 1.2 2.7 9189 chr2R 21738260 intergenic not near genes chr2R 21742854 intergenic not near genes chr2R 21747449 intergenic not near genes chr2R_6_21740001 chr2R_21740001 RAL-359 916 chr2R 21753070 21753114 chr2R 21753575 21753619 roo 11 505 3.5 5.0 4.2 2.1 549 chr2R 21753070 intergenic not near genes chr2R 21753344 intergenic not near genes chr2R 21753619 intergenic not near genes chr2R_11_21750001 chr2R_21750001 RAL-359 917 chr2R 21792771 21792819 chr2R 21792866 21792917 10 94 2.5 0.0 1.2 4.5 146 chr2R 21792771 intergenic not near genes chr2R 21792844 intergenic not near genes chr2R 21792917 intergenic not near genes chr2R_10_21790001 chr2R_21790001 RAL-359 918 chr2R 21795077 21795114 chr2R 21795202 21795239 10 124 5.0 7.5 6.2 1.4 162 chr2R 21795077 intergenic not near genes chr2R 21795158 intergenic not near genes chr2R 21795239 intergenic not near genes chr2R_10_21795001 chr2R_21795001 RAL-359 919 chr2R 21805809 21805851 chr2R 21805906 21805948 16 96 6.0 5.0 5.5 2.5 139 chr2R 21805809 intergenic not near genes chr2R 21805878 intergenic not near genes chr2R 21805948 intergenic not near genes chr2R_16_21805001 chr2R_21805001 RAL-359 920 chr2R 21809516 21809557 chr2R 21817776 21817806 roo 9 8257 3.5 6.5 5.0 1.5 8290 chr2R 21809516 intergenic not near genes chr2R 21813661 intergenic not near genes chr2R 21817806 intergenic not near genes chr2R_9_21810001 chr2R_21810001 RAL-359 921 chr2R 21869978 21870018 chr2R 21870305 21870341 7 323 2.0 2.0 2.0 2.3 363 chr2R 21869978 intergenic not near genes chr2R 21870160 intergenic not near genes chr2R 21870341 intergenic not near genes chr2R_7_21870001 chr2R_21870001 RAL-359 922 chr2R 21906254 21906302 chr2R 21906375 21906423 10 121 3.5 3.5 3.5 2.2 169 chr2R 21906254 intron Fili + chr2R 21906338 intron Fili + chr2R 21906423 intron Fili + chr2R_10_21905001 chr2R_21905001 RAL-359 923 chr2R 22009755 22009807 chr2R 22009855 22009903 4 103 0.5 4.5 2.5 1.1 148 chr2R 22009755 intron CG34370 - chr2R 22009829 intron CG34370 - chr2R 22009903 intron CG34370 - chr2R_4_22005001 chr2R_22005001 RAL-359 924 chr2R 22072682 22072716 chr2R 22072787 22072805 8 102 1.5 2.5 2.0 2.7 123 chr2R 22072682 intron CG11474 - chr2R 22072744 intron CG11474 - chr2R 22072805 exon CG11474 - chr2R_8_22070001 chr2R_22070001 RAL-359 925 chr2R 22135440 22135461 chr2R 22135563 22135580 5 124 3.0 2.5 2.8 1.3 140 chr2R 22135440 intergenic not near genes chr2R 22135510 intergenic not near genes chr2R 22135580 intergenic not near genes chr2R_5_22135001 chr2R_22135001 RAL-359 926 chr2R 22258482 22258517 chr2R 22258629 22258662 4 148 2.5 1.5 2.0 1.3 180 chr2R 22258482 intron dve + chr2R 22258572 intron dve + chr2R 22258662 intron dve + chr2R_4_22255001 chr2R_22255001 RAL-359 927 chr2R 22290059 22290092 chr2R 22290163 22290180 13 103 3.5 4.0 3.8 2.7 121 chr2R 22290059 intergenic not near genes chr2R 22290120 intergenic not near genes chr2R 22290180 intergenic not near genes chr2R_13_22290001 chr2R_22290001 RAL-359 928 chr2R 22297718 22297735 chr2R 22297802 22297827 4 92 0.0 4.5 2.2 1.2 109 chr2R 22297718 intergenic wdp - chr2R 22297772 intergenic wdp - chr2R 22297827 intergenic wdp - chr2R_4_22295001 chr2R_22295001 RAL-359 929 chr2R 22349682 22349713 chr2R 22351483 22351517 jockey 4 1797 4.0 7.5 5.8 0.6 1835 chr2R 22349682 intron Liprin-gamma - chr2R 22350600 intron Liprin-gamma - chr2R 22351517 intron Liprin-gamma - chr2R_4_22350001 chr2R_22350001 RAL-359 930 chr2R 22525748 22525779 chr2R 22529317 22529352 jockey 5 3572 1.5 4.0 2.8 1.3 3604 chr2R 22525748 intron px - chr2R 22527550 intron px - chr2R 22529352 intron px - chr2R_5_22525001 chr2R_22525001 RAL-359 931 chr2R 22545600 22545649 chr2R 22545699 22545747 7 99 2.0 3.5 2.8 1.8 147 chr2R 22545600 intron px - chr2R 22545674 intron px - chr2R 22545747 intron px - chr2R_7_22545001 chr2R_22545001 RAL-359 932 chr2R 22659495 22659528 chr2R 22659587 22659626 14 95 4.0 2.5 3.2 3.3 131 chr2R 22659495 3` UTR,5` UTR,5` UTR CG13510 +,CG13511 +,CG42565 + chr2R 22659560 3` UTR,5` UTR,5` UTR CG13510 +,CG13511 +,CG42565 + chr2R 22659626 3` UTR,5` UTR,5` UTR CG13510 +,CG13511 +,CG42565 + chr2R_14_22655001 chr2R_22655001 RAL-359 933 chr2R 22723214 22723259 chr2R 22723310 22723355 13 95 3.5 4.0 3.8 2.7 141 chr2R 22723214 intron jbug - chr2R 22723284 intron jbug - chr2R 22723355 intron jbug - chr2R_13_22720001 chr2R_22720001 RAL-359 934 chr2R 22774948 22774992 chr2R 22775387 22775431 jockey 7 439 6.0 5.5 5.8 1.0 483 chr2R 22774948 intron CG42260 - chr2R 22775190 intron CG42260 - chr2R 22775431 intron CG42260 - chr2R_7_22775001 chr2R_22775001 RAL-359 935 chr2R 22785718 22785754 chr2R 22785816 22785852 6 98 5.0 5.0 5.0 1.0 134 chr2R 22785718 intron CG42260 - chr2R 22785785 intron CG42260 - chr2R 22785852 intron CG42260 - chr2R_6_22785001 chr2R_22785001 RAL-359 936 chr2R 22860755 22860787 chr2R 22860867 22860898 6 112 1.0 0.0 0.5 4.0 143 chr2R 22860755 intergenic not near genes chr2R 22860826 intergenic not near genes chr2R 22860898 intergenic not near genes chr2R_6_22860001 chr2R_22860001 RAL-359 937 chr2R 22941805 22941849 chr2R 22941904 22941948 10 99 0.0 4.5 2.2 3.1 143 chr2R 22941805 intergenic CG42694 + chr2R 22941876 5` UTR CG42694 + chr2R 22941948 5` UTR CG42694 + chr2R_10_22940001 chr2R_22940001 RAL-359 938 chr2R 23052632 23052683 chr2R 23052728 23052779 7 95 2.5 3.5 3.0 1.8 147 chr2R 23052632 intergenic not near genes chr2R 23052706 intergenic not near genes chr2R 23052779 intergenic not near genes chr2R_7_23050001 chr2R_23050001 RAL-359 939 chr2R 23070389 23070442 chr2R 23070505 23070557 17 114 2.5 4.0 3.2 4.0 168 chr2R 23070389 intron l(2)k09913 + chr2R 23070473 intron l(2)k09913 + chr2R 23070557 intron l(2)k09913 + chr2R_17_23070001 chr2R_23070001 RAL-359 940 chr2R 23098863 23098906 chr2R 23099030 23099073 8 162 1.5 4.0 2.8 2.1 210 chr2R 23098863 intergenic not near genes chr2R 23098968 intergenic not near genes chr2R 23099073 intergenic not near genes chr2R_8_23095001 chr2R_23095001 RAL-359 941 chr2R 23122887 23122937 chr2R 23122987 23123037 12 99 4.0 1.5 2.8 3.2 150 chr2R 23122887 intergenic not near genes chr2R 23122962 intergenic not near genes chr2R 23123037 intergenic not near genes chr2R_12_23120001 chr2R_23120001 RAL-359 942 chr2R 23134820 23134848 chr2R 23134923 23134928 6 97 5.0 7.0 6.0 0.9 108 chr2R 23134820 intergenic not near genes chr2R 23134874 intergenic not near genes chr2R 23134928 intergenic not near genes chr2R_6_23130001 chr2R_23130001 RAL-359 943 chr2R 23188541 23188588 chr2R 23188639 23188669 10 96 2.0 3.0 2.5 2.9 128 chr2R 23188541 intron CG34371 - chr2R 23188605 intron CG34371 - chr2R 23188669 intron CG34371 - chr2R_10_23185001 chr2R_23185001 RAL-359 944 chr2R 23228281 23228307 chr2R 23228404 23228424 7 121 4.5 5.0 4.8 1.2 143 chr2R 23228281 intergenic not near genes chr2R 23228352 intergenic not near genes chr2R 23228424 intergenic not near genes chr2R_7_23225001 chr2R_23225001 RAL-359 945 chr2R 23394306 23394362 chr2R 23394408 23394464 18 102 3.0 5.5 4.2 3.5 158 chr2R 23394306 intron CG3530 - chr2R 23394385 intron CG3530 - chr2R 23394464 intron CG3530 - chr2R_18_23390001 chr2R_23390001 RAL-359 946 chr2R 23402594 23402639 chr2R 23407690 23407735 flea 7 5096 9.5 9.5 9.5 0.7 5141 chr2R 23402594 intergenic CG3520 - chr2R 23405164 intergenic not near genes chr2R 23407735 intergenic not near genes chr2R_7_23405001 chr2R_23405001 RAL-359 947 chr2R 23411225 23411261 chr2R 23411324 23411359 5 99 2.0 6.0 4.0 1.0 134 chr2R 23411225 intergenic not near genes chr2R 23411292 intergenic not near genes chr2R 23411359 intergenic not near genes chr2R_5_23410001 chr2R_23410001 RAL-359 948 chr2R 23421074 23421117 chr2R 23421166 23421216 11 96 3.5 6.0 4.8 1.9 142 chr2R 23421074 intergenic CG9815 - chr2R 23421145 intergenic CG9815 - chr2R 23421216 intergenic CG9815 - chr2R_11_23420001 chr2R_23420001 RAL-359 949 chr2R 23508901 23508944 chr2R 23509038 23509081 12 137 3.0 4.0 3.5 2.7 180 chr2R 23508901 intergenic not near genes chr2R 23508991 intergenic not near genes chr2R 23509081 intergenic not near genes chr2R_12_23505001 chr2R_23505001 RAL-359 950 chr2R 23607019 23607180 chr2R 23607120 23607293 13 105 1.0 1.5 1.2 5.9 274 chr2R 23607019 intron CG17664 - chr2R 23607156 intron CG17664 - chr2R 23607293 intron CG17664 - chr2R_13_23605001 chr2R_23605001 RAL-359 951 chr2R 23747314 23747328 chr2R 23748960 23748975 5 1646 24.0 26.0 25.0 0.2 1661 chr2R 23747314 intergenic CG13560 +,egl - chr2R 23748144 3` UTR CG13560 + chr2R 23748975 intergenic CG12491 -,CG34105 -,CG13560 + chr2R_5_23745001 chr2R_23745001 RAL-359 952 chr2R 23776134 23776174 chr2R 23776230 23776232 6 77 2.0 2.0 2.0 2.0 98 chr2R 23776134 intron CG9850 - chr2R 23776183 intron CG9850 - chr2R 23776232 intron CG9850 - chr2R_6_23775001 chr2R_23775001 RAL-359 953 chr2R 23821941 23821957 chr2R 23822027 23822037 4 90 0.0 5.0 2.5 1.1 96 chr2R 23821941 intron CG5549 + chr2R 23821989 intron CG5549 + chr2R 23822037 intron CG5549 + chr2R_4_23820001 chr2R_23820001 RAL-359 954 chr2R 23914295 23914330 chr2R 23921921 23921968 412 11 7636 4.0 2.5 3.2 2.6 7673 chr2R 23914295 exon kcc + chr2R 23918132 intron kcc + chr2R 23921968 exon kcc + chr2R_11_23915001 chr2R_23915001 RAL-359 955 chr2R 24031361 24031410 chr2R 24031465 24031500 20 103 10.0 5.5 7.8 2.3 139 chr2R 24031361 5` UTR CG30172 - chr2R 24031430 intergenic CG30172 -,Chi - chr2R 24031500 intergenic Chi -,CG30172 - chr2R_20_24030001 chr2R_24030001 RAL-359 956 chr2R 24147061 24147097 chr2R 24154644 24154694 412 4 7588 3.5 3.0 3.2 1.0 7633 chr2R 24147061 intron Dat + chr2R 24150878 intron Dat + chr2R 24154694 intron Dat + chr2R_4_24150001 chr2R_24150001 RAL-359 957 chr2R 24177214 24177264 chr2R 24184719 24184769 412 12 7505 5.5 3.5 4.5 2.2 7555 chr2R 24177214 3` UTR Nop60B + chr2R 24180992 intron Nop60B + chr2R 24184769 3` UTR Nop60B + chr2R_12_24180001 chr2R_24180001 RAL-359 958 chr2R 24353408 24353433 chr2R 24361790 24361815 roo 8 8381 9.0 3.0 6.0 1.1 8407 chr2R 24353408 intron,intron bs +,CR44811 - chr2R 24357612 intron,intron bs +,CR44811 - chr2R 24361815 intron,intron bs +,CR44811 - chr2R_8_24355001 chr2R_24355001 RAL-359 959 chr2R 24509294 24509336 chr2R 24509398 24509441 13 104 1.5 5.0 3.2 3.1 147 chr2R 24509294 intergenic Letm1 - chr2R 24509368 intergenic Letm1 - chr2R 24509441 intergenic Letm1 - chr2R_13_24505001 chr2R_24505001 RAL-359 960 chr2R 24636883 24636909 chr2R 24636989 24637015 9 106 3.0 0.0 1.5 3.6 132 chr2R 24636883 intron CG13594 - chr2R 24636949 intron CG13594 - chr2R 24637015 intron CG13594 - chr2R_9_24635001 chr2R_24635001 RAL-359 961 chr2R 24647557 24647618 chr2R 24655148 24655195 412 5 7585 0.0 3.0 1.5 2.0 7638 chr2R 24647557 intergenic not near genes chr2R 24651376 intergenic not near genes chr2R 24655195 intergenic not near genes chr2R_5_24650001 chr2R_24650001 RAL-359 962 chr2R 24727879 24727915 chr2R 24735393 24735443 mdg1 6 7521 3.0 4.5 3.8 1.2 7564 chr2R 24727879 intron Mid1 - chr2R 24731661 intron Mid1 - chr2R 24735443 intron Mid1 - chr2R_6_24730001 chr2R_24730001 RAL-359 963 chr2R 24763598 24763616 chr2R 24765591 24765612 G2 5 1993 4.0 2.0 3.0 1.2 2014 chr2R 24763598 exon CG3894 + chr2R 24764605 intron CG3894 + chr2R 24765612 exon CG3894 + chr2R_5_24760001 chr2R_24760001 RAL-359 964 chr2R 24763621 24763644 chr2R 24765590 24765615 G2 4 1977 2.0 1.5 1.8 1.4 1994 chr2R 24763621 exon CG3894 + chr2R 24764618 intron CG3894 + chr2R 24765615 exon CG3894 + chr2R_4_24760001 chr2R_24760001 RAL-359 965 chr2R 24812362 24812405 chr2R 24812454 24812469 13 90 3.0 1.0 2.0 4.3 107 chr2R 24812362 intergenic not near genes chr2R 24812416 intergenic not near genes chr2R 24812469 intergenic not near genes chr2R_13_24810001 chr2R_24810001 RAL-359 966 chr2R 24884032 24884079 chr2R 24884134 24884176 16 101 3.0 7.0 5.0 2.7 144 chr2R 24884032 intron NKAIN + chr2R 24884104 intron NKAIN + chr2R 24884176 intron NKAIN + chr2R_16_24880001 chr2R_24880001 RAL-359 967 chr2R 25003636 25003688 chr2R 25005080 25005114 10 1442 1.5 2.5 2.0 3.3 1478 chr2R 25003636 intron zip - chr2R 25004375 intron zip - chr2R 25005114 intron zip - chr2R_10_25000001 chr2R_25000001 RAL-359 968 chr2R 25014529 25014573 chr2R 25014625 25014658 7 89 2.5 4.5 3.5 1.6 129 chr2R 25014529 intron uzip + chr2R 25014594 intron uzip + chr2R 25014658 intron uzip + chr2R_7_25010001 chr2R_25010001 RAL-359 969 chr2R 25018326 25018368 chr2R 25018447 25018489 5 118 4.5 6.0 5.2 0.8 163 chr2R 25018326 intron uzip + chr2R 25018408 intron uzip + chr2R 25018489 intron uzip + chr2R_5_25015001 chr2R_25015001 RAL-359 970 chr2R 25022625 25022664 chr2R 25022729 25022736 9 100 8.5 5.5 7.0 1.1 111 chr2R 25022625 intron uzip + chr2R 25022680 intron uzip + chr2R 25022736 intron uzip + chr2R_9_25020001 chr2R_25020001 RAL-359 971 chr2R 25101263 25101269 chr2R 25101380 25101391 5 121 8.0 4.0 6.0 0.7 128 chr2R 25101263 intron lov - chr2R 25101327 intron lov - chr2R 25101391 intron lov - chr2R_5_25100001 chr2R_25100001 RAL-359 972 chr2R 25101277 25101303 chr2R 25101379 25101425 8 118 4.5 4.0 4.2 1.5 148 chr2R 25101277 intron lov - chr2R 25101351 intron lov - chr2R 25101425 intron lov - chr2R_8_25100001 chr2R_25100001 RAL-359 973 chr2R 25141636 25141680 chr2R 25159346 25159381 roo 9 17708 5.0 6.5 5.8 1.3 17745 chr2R 25141636 intergenic not near genes chr2R 25150508 intergenic not near genes chr2R 25159381 intergenic not near genes chr2R_9_25150001 chr2R_25150001 RAL-359 974 chr2R 25234747 25234792 chr2R 25234846 25234892 11 100 3.0 2.5 2.8 2.9 145 chr2R 25234747 intron CG9380 - chr2R 25234820 intron CG9380 - chr2R 25234892 intron CG9380 - chr2R_11_25230001 chr2R_25230001 RAL-359 975 chr3L 68965 69013 chr3L 69072 69120 8 107 4.0 3.5 3.8 1.7 155 chr3L 68965 3` UTR Lsp1gamma + chr3L 69042 intergenic Lsp1gamma +,CR44510 + chr3L 69120 intergenic CR44510 +,Lsp1gamma + chr3L_8_65001 chr3L_65001 RAL-359 976 chr3L 93790 93815 chr3L 93873 93913 4 90 3.5 2.5 3.0 1.0 123 chr3L 93790 intergenic not near genes chr3L 93852 intergenic not near genes chr3L 93913 intergenic not near genes chr3L_4_90001 chr3L_90001 RAL-359 977 chr3L 105986 106028 chr3L 106135 106177 10 146 4.5 6.5 5.5 1.5 191 chr3L 105986 intergenic not near genes chr3L 106082 intergenic not near genes chr3L 106177 intergenic not near genes chr3L_10_105001 chr3L_105001 RAL-359 978 chr3L 110191 110237 chr3L 119378 119424 roo 9 9187 5.5 4.0 4.8 1.6 9233 chr3L 110191 intergenic not near genes chr3L 114808 intergenic not near genes chr3L 119424 intergenic not near genes chr3L_9_110001 chr3L_110001 RAL-359 979 chr3L 161691 161716 chr3L 162537 162562 7 846 1.0 4.0 2.5 2.0 871 chr3L 161691 intron p130CAS + chr3L 162126 intron p130CAS + chr3L 162562 intron p130CAS + chr3L_7_160001 chr3L_160001 RAL-359 980 chr3L 165663 165711 chr3L 165821 165867 15 158 2.5 6.0 4.2 2.9 204 chr3L 165663 intron p130CAS + chr3L 165765 intron p130CAS + chr3L 165867 intron p130CAS + chr3L_15_165001 chr3L_165001 RAL-359 981 chr3L 338793 338837 chr3L 338907 338951 10 114 5.0 5.5 5.2 1.6 158 chr3L 338793 intron,intron Ptpmeg +,mthl10 - chr3L 338872 intron,intron Ptpmeg +,mthl10 - chr3L 338951 intron,intron Ptpmeg +,mthl10 - chr3L_10_335001 chr3L_335001 RAL-359 982 chr3L 391904 391928 chr3L 392017 392035 8 112 0.0 3.0 1.5 3.2 131 chr3L 391904 intron trh - chr3L 391970 intron trh - chr3L 392035 intron,3` UTR trh -,CR45378 - chr3L_8_390001 chr3L_390001 RAL-359 983 chr3L 402669 402718 chr3L 409741 409787 297 23 7067 2.5 7.5 5.0 3.8 7118 chr3L 402669 intergenic not near genes chr3L 406228 intergenic not near genes chr3L 409787 intergenic not near genes chr3L_23_405001 chr3L_405001 RAL-359 984 chr3L 421036 421068 chr3L 421152 421184 5 116 3.5 1.5 2.5 1.4 148 chr3L 421036 intergenic not near genes chr3L 421110 intergenic not near genes chr3L 421184 intergenic not near genes chr3L_5_420001 chr3L_420001 RAL-359 985 chr3L 494583 494591 chr3L 494685 494693 4 102 5.0 0.0 2.5 1.1 110 chr3L 494583 intron klar - chr3L 494638 intron klar - chr3L 494693 intron klar - chr3L_4_490001 chr3L_490001 RAL-359 986 chr3L 494601 494619 chr3L 494683 494708 6 93 3.0 0.0 1.5 2.4 107 chr3L 494601 intron klar - chr3L 494654 intron klar - chr3L 494708 intron klar - chr3L_6_490001 chr3L_490001 RAL-359 987 chr3L 507033 507068 chr3L 507139 507141 7 101 5.0 0.0 2.5 2.0 108 chr3L 507033 intron klar - chr3L 507087 intron klar - chr3L 507141 intron klar - chr3L_7_505001 chr3L_505001 RAL-359 988 chr3L 514261 514294 chr3L 514358 514391 15 97 5.0 5.5 5.2 2.4 130 chr3L 514261 intron klar - chr3L 514326 intron klar - chr3L 514391 intron klar - chr3L_15_510001 chr3L_510001 RAL-359 989 chr3L 563950 564002 chr3L 564149 564201 11 199 3.0 3.5 3.2 2.6 251 chr3L 563950 intron hipk + chr3L 564076 intron hipk + chr3L 564201 intron hipk + chr3L_11_560001 chr3L_560001 RAL-359 990 chr3L 705880 705921 chr3L 705996 706037 5 116 5.5 3.0 4.2 1.0 157 chr3L 705880 intergenic CG13895 -,CR44514 + chr3L 705958 3` UTR CG13895 - chr3L 706037 3` UTR CG13895 - chr3L_5_705001 chr3L_705001 RAL-359 991 chr3L 789896 789926 chr3L 790401 790429 roo 8 504 3.0 0.5 1.8 2.9 533 chr3L 789896 intergenic not near genes chr3L 790162 intergenic not near genes chr3L 790429 intergenic not near genes chr3L_8_790001 chr3L_790001 RAL-359 992 chr3L 832589 832602 chr3L 832689 832702 4 100 8.0 1.5 4.8 0.7 113 chr3L 832589 intron,3` UTR CG13900 -,snoRNA:Psi28S-3308 - chr3L 832646 intron CG13900 - chr3L 832702 intron CG13900 - chr3L_4_830001 chr3L_830001 RAL-359 993 chr3L 875638 875693 chr3L 875745 875796 8 100 3.5 5.0 4.2 1.5 158 chr3L 875638 intron CG32479 + chr3L 875717 intron CG32479 + chr3L 875796 intron CG32479 + chr3L_8_875001 chr3L_875001 RAL-359 994 chr3L 905073 905090 chr3L 905177 905194 4 104 0.0 4.0 2.0 1.3 121 chr3L 905073 intergenic not near genes chr3L 905134 intergenic not near genes chr3L 905194 intergenic not near genes chr3L_4_905001 chr3L_905001 RAL-359 995 chr3L 922153 922179 chr3L 922250 922281 5 93 2.5 1.0 1.8 1.8 128 chr3L 922153 intron Glut1 + chr3L 922217 intron Glut1 + chr3L 922281 intron Glut1 + chr3L_5_920001 chr3L_920001 RAL-359 996 chr3L 925164 925208 chr3L 932610 932654 mdg1 13 7446 2.0 4.5 3.2 3.1 7490 chr3L 925164 intron Glut1 + chr3L 928909 intron Glut1 + chr3L 932654 intron Glut1 + chr3L_13_925001 chr3L_925001 RAL-359 997 chr3L 933909 933941 chr3L 934032 934064 13 120 3.0 7.0 5.0 2.2 155 chr3L 933909 intron Glut1 + chr3L 933986 intron Glut1 + chr3L 934064 intron Glut1 + chr3L_13_930001 chr3L_930001 RAL-359 998 chr3L 939754 939794 chr3L 940895 940935 jockey 5 1141 3.5 7.0 5.2 0.8 1181 chr3L 939754 intron Glut1 + chr3L 940344 intron Glut1 + chr3L 940935 intron Glut1 + chr3L_5_940001 chr3L_940001 RAL-359 999 chr3L 1109625 1109662 chr3L 1109732 1109759 11 106 5.0 4.0 4.5 2.0 134 chr3L 1109625 intergenic not near genes chr3L 1109692 intergenic not near genes chr3L 1109759 intergenic not near genes chr3L_11_1105001 chr3L_1105001 RAL-359 1000 chr3L 1154111 1154163 chr3L 1163281 1163318 roo 13 9167 2.5 4.0 3.2 3.1 9207 chr3L 1154111 intron bab2 - chr3L 1158714 intron bab2 - chr3L 1163318 intron bab2 - chr3L_13_1155001 chr3L_1155001 RAL-359 1001 chr3L 1219574 1219619 chr3L 1227327 1227372 412 12 7750 2.5 3.0 2.8 3.2 7798 chr3L 1219574 intron mwh + chr3L 1223473 intron mwh + chr3L 1227372 intron mwh + chr3L_12_1220001 chr3L_1220001 RAL-359 1002 chr3L 1257622 1257654 chr3L 1257722 1257754 9 99 0.0 5.0 2.5 2.6 132 chr3L 1257622 intron CG9134 + chr3L 1257688 intron CG9134 + chr3L 1257754 intron CG9134 + chr3L_9_1255001 chr3L_1255001 RAL-359 1003 chr3L 1280227 1280280 chr3L 1280386 1280444 5 158 1.5 1.5 1.5 2.0 217 chr3L 1280227 intron CG32333 + chr3L 1280336 intron CG32333 + chr3L 1280444 intron CG32333 + chr3L_5_1280001 chr3L_1280001 RAL-359 1004 chr3L 1310981 1311007 chr3L 1315832 1315875 14 4856 23.0 28.5 25.8 0.5 4894 chr3L 1310981 exon CG2469 + chr3L 1313428 intergenic CG9186 -,CG9153 + chr3L 1315875 exon CG9153 + chr3L_14_1310001 chr3L_1310001 RAL-359 1005 chr3L 1324628 1324658 chr3L 1324726 1324756 10 96 5.0 9.0 7.0 1.2 128 chr3L 1324628 intron Myo61F + chr3L 1324692 intron Myo61F + chr3L 1324756 intron Myo61F + chr3L_10_1320001 chr3L_1320001 RAL-359 1006 chr3L 1361276 1361310 chr3L 1361365 1361377 4 80 2.5 2.5 2.5 1.1 101 chr3L 1361276 intron Ptp61F - chr3L 1361326 intron Ptp61F - chr3L 1361377 intron Ptp61F - chr3L_4_1360001 chr3L_1360001 RAL-359 1007 chr3L 1396725 1396750 chr3L 1396829 1396853 6 104 5.5 9.0 7.2 0.7 128 chr3L 1396725 intron Ptp61F - chr3L 1396789 intron Ptp61F - chr3L 1396853 intron Ptp61F - chr3L_6_1395001 chr3L_1395001 RAL-359 1008 chr3L 1415740 1415772 chr3L 1415861 1415882 6 116 2.0 4.5 3.2 1.4 142 chr3L 1415740 intron Ptp61F - chr3L 1415811 intron Ptp61F - chr3L 1415882 intron Ptp61F - chr3L_6_1415001 chr3L_1415001 RAL-359 1009 chr3L 1505989 1505994 chr3L 1513605 1513611 17.6 4 7617 10.5 4.0 7.2 0.5 7622 chr3L 1505989 intron,intron Psa +,cue - chr3L 1509800 intron,intron Psa +,cue - chr3L 1513611 intron,intron Psa +,cue - chr3L_4_1505001 chr3L_1505001 RAL-359 1010 chr3L 1505995 1506029 chr3L 1513598 1513640 17.6 12 7615 4.0 2.5 3.2 2.9 7645 chr3L 1505995 intron,intron Psa +,cue - chr3L 1509818 intron,intron Psa +,cue - chr3L 1513640 intron,intron Psa +,cue - chr3L_12_1505001 chr3L_1505001 RAL-359 1011 chr3L 1571467 1571493 chr3L 1571572 1571598 8 103 1.0 6.0 3.5 1.8 131 chr3L 1571467 intron CG12004 + chr3L 1571532 intron CG12004 + chr3L 1571598 intron CG12004 + chr3L_8_1570001 chr3L_1570001 RAL-359 1012 chr3L 1726590 1726643 chr3L 1726690 1726717 7 95 3.5 3.0 3.2 1.7 127 chr3L 1726590 intron drpr - chr3L 1726654 intron drpr - chr3L 1726717 intron drpr - chr3L_7_1725001 chr3L_1725001 RAL-359 1013 chr3L 1740834 1740877 chr3L 1741098 1741107 pogo 10 257 5.0 3.5 4.2 1.9 273 chr3L 1740834 intron Gk + chr3L 1740970 intron Gk + chr3L 1741107 intron Gk + chr3L_10_1740001 chr3L_1740001 RAL-359 1014 chr3L 1754676 1754710 chr3L 1754809 1754849 12 137 4.5 5.5 5.0 2.0 173 chr3L 1754676 intron Cht2 - chr3L 1754762 intron Cht2 - chr3L 1754849 intron Cht2 - chr3L_12_1750001 chr3L_1750001 RAL-359 1015 chr3L 1805677 1805706 chr3L 1805871 1805887 4 191 3.5 3.5 3.5 0.9 210 chr3L 1805677 exon CG42676 + chr3L 1805782 intron CG42676 + chr3L 1805887 intron CG42676 + chr3L_4_1805001 chr3L_1805001 RAL-359 1016 chr3L 1853029 1853051 chr3L 1853133 1853155 4 104 2.5 3.0 2.8 1.1 126 chr3L 1853029 intron CG13936 - chr3L 1853092 intron CG13936 - chr3L 1853155 intron CG13936 - chr3L_4_1850001 chr3L_1850001 RAL-359 1017 chr3L 1913449 1913474 chr3L 1914021 1914041 4 572 4.5 1.5 3.0 1.0 592 chr3L 1913449 intergenic not near genes chr3L 1913745 intergenic not near genes chr3L 1914041 intergenic not near genes chr3L_4_1910001 chr3L_1910001 RAL-359 1018 chr3L 1924948 1924973 chr3L 1925106 1925129 4 158 1.0 2.5 1.8 1.4 181 chr3L 1924948 exon Dbx + chr3L 1925038 intron Dbx + chr3L 1925129 intron Dbx + chr3L_4_1925001 chr3L_1925001 RAL-359 1019 chr3L 1936916 1936927 chr3L 1937927 1937938 7 1011 21.5 3.5 12.5 0.5 1022 chr3L 1936916 intron CG5687 - chr3L 1937427 intron CG5687 - chr3L 1937938 intron CG5687 - chr3L_7_1935001 chr3L_1935001 RAL-359 1020 chr3L 1990080 1990121 chr3L 1990190 1990231 10 109 2.5 4.5 3.5 2.2 151 chr3L 1990080 intergenic not near genes chr3L 1990156 intergenic not near genes chr3L 1990231 intergenic not near genes chr3L_10_1990001 chr3L_1990001 RAL-359 1021 chr3L 2108237 2108280 chr3L 2113461 2113500 copia 11 5224 3.0 5.0 4.0 2.2 5263 chr3L 2108237 intron sls - chr3L 2110868 intron sls - chr3L 2113500 intron sls - chr3L_11_2110001 chr3L_2110001 RAL-359 1022 chr3L 2113649 2113690 chr3L 2113972 2114009 9 321 4.5 3.0 3.8 1.9 360 chr3L 2113649 intron sls - chr3L 2113829 intron sls - chr3L 2114009 intron sls - chr3L_9_2110001 chr3L_2110001 RAL-359 1023 chr3L 2139186 2139222 chr3L 2139287 2139323 10 100 4.0 3.5 3.8 2.1 137 chr3L 2139186 intron zormin - chr3L 2139254 intron zormin - chr3L 2139323 intron zormin - chr3L_10_2135001 chr3L_2135001 RAL-359 1024 chr3L 2168756 2168802 chr3L 2168867 2168913 9 111 2.5 2.5 2.5 2.6 157 chr3L 2168756 exon CG15879 - chr3L 2168834 intron CG15879 - chr3L 2168913 intron CG15879 - chr3L_9_2165001 chr3L_2165001 RAL-359 1025 chr3L 2187586 2187634 chr3L 2187689 2187737 12 102 1.0 5.0 3.0 3.0 151 chr3L 2187586 exon CG13810 + chr3L 2187662 3` UTR CG13810 + chr3L 2187737 intergenic CG13810 + chr3L_12_2185001 chr3L_2185001 RAL-359 1026 chr3L 2199791 2199820 chr3L 2199887 2199911 9 95 0.0 7.0 3.5 2.0 120 chr3L 2199791 intergenic not near genes chr3L 2199851 intergenic not near genes chr3L 2199911 intergenic not near genes chr3L_9_2195001 chr3L_2195001 RAL-359 1027 chr3L 2278756 2278777 chr3L 2279023 2279051 4 272 1.5 1.5 1.5 1.6 295 chr3L 2278756 intergenic not near genes chr3L 2278904 intergenic not near genes chr3L 2279051 intergenic not near genes chr3L_4_2275001 chr3L_2275001 RAL-359 1028 chr3L 2307984 2308026 chr3L 2308110 2308152 11 121 8.5 2.0 5.2 1.8 168 chr3L 2307984 intergenic not near genes chr3L 2308068 intergenic not near genes chr3L 2308152 intergenic not near genes chr3L_11_2305001 chr3L_2305001 RAL-359 1029 chr3L 2321137 2321193 chr3L 2321234 2321274 6 92 1.0 2.5 1.8 2.1 137 chr3L 2321137 intergenic not near genes chr3L 2321206 intergenic not near genes chr3L 2321274 intergenic not near genes chr3L_6_2320001 chr3L_2320001 RAL-359 1030 chr3L 2424609 2424656 chr3L 2424709 2424756 12 99 3.0 3.5 3.2 2.9 147 chr3L 2424609 intron CG45186 + chr3L 2424682 intron CG45186 + chr3L 2424756 intron CG45186 + chr3L_12_2420001 chr3L_2420001 RAL-359 1031 chr3L 2447489 2447536 chr3L 2456665 2456704 roo 9 9172 5.0 5.5 5.2 1.5 9215 chr3L 2447489 intron CG45186 + chr3L 2452096 intron CG45186 + chr3L 2456704 intron CG45186 + chr3L_9_2450001 chr3L_2450001 RAL-359 1032 chr3L 2546744 2546788 chr3L 2546853 2546897 4 109 4.5 3.5 4.0 0.8 153 chr3L 2546744 intron Spn - chr3L 2546820 intron Spn - chr3L 2546897 intron Spn - chr3L_4_2545001 chr3L_2545001 RAL-359 1033 chr3L 2561508 2561559 chr3L 2561605 2561656 16 96 4.5 2.0 3.2 3.8 148 chr3L 2561508 intron msn - chr3L 2561582 intron msn - chr3L 2561656 intron msn - chr3L_16_2560001 chr3L_2560001 RAL-359 1034 chr3L 2595568 2595605 chr3L 2595674 2595711 16 105 6.0 4.0 5.0 2.7 143 chr3L 2595568 3` UTR dos + chr3L 2595640 intergenic dos +,CG16984 +,CG12182 - chr3L 2595711 intergenic CG16984 +,dos +,CG12182 - chr3L_16_2595001 chr3L_2595001 RAL-359 1035 chr3L 2617244 2617255 chr3L 2617348 2617361 4 106 1.0 3.0 2.0 1.3 117 chr3L 2617244 intron Pxn - chr3L 2617302 intron Pxn - chr3L 2617361 intron Pxn - chr3L_4_2615001 chr3L_2615001 RAL-359 1036 chr3L 2626391 2626420 chr3L 2626535 2626564 7 142 5.5 2.5 4.0 1.4 173 chr3L 2626391 intron Pxn - chr3L 2626478 intron Pxn - chr3L 2626564 intron Pxn - chr3L_7_2625001 chr3L_2625001 RAL-359 1037 chr3L 2683924 2683959 chr3L 2684020 2684055 13 96 6.0 3.5 4.8 2.2 131 chr3L 2683924 intron Fife - chr3L 2683990 intron Fife - chr3L 2684055 intron Fife - chr3L_13_2680001 chr3L_2680001 RAL-359 1038 chr3L 2719522 2719555 chr3L 2719644 2719677 6 122 4.0 4.5 4.2 1.2 155 chr3L 2719522 3` UTR Mrtf - chr3L 2719600 3` UTR Mrtf - chr3L 2719677 3` UTR Mrtf - chr3L_6_2715001 chr3L_2715001 RAL-359 1039 chr3L 2731503 2731549 chr3L 2731603 2731651 10 100 2.0 4.0 3.0 2.5 148 chr3L 2731503 intron Mrtf - chr3L 2731577 intron Mrtf - chr3L 2731651 intron Mrtf - chr3L_10_2730001 chr3L_2730001 RAL-359 1040 chr3L 2751445 2751460 chr3L 2755760 2755775 F-element 4 4315 9.0 4.5 6.8 0.5 4330 chr3L 2751445 intron Mrtf - chr3L 2753610 intron Mrtf - chr3L 2755775 intron Mrtf - chr3L_4_2750001 chr3L_2750001 RAL-359 1041 chr3L 2795708 2795747 chr3L 2795851 2795890 8 143 6.0 3.5 4.8 1.4 182 chr3L 2795708 intron CG43444 - chr3L 2795799 intron CG43444 - chr3L 2795890 intron CG43444 - chr3L_8_2795001 chr3L_2795001 RAL-359 1042 chr3L 2810213 2810251 chr3L 2810311 2810350 7 99 5.5 3.0 4.2 1.3 137 chr3L 2810213 intron CG43444 - chr3L 2810282 intron CG43444 - chr3L 2810350 intron CG43444 - chr3L_7_2810001 chr3L_2810001 RAL-359 1043 chr3L 2882094 2882141 chr3L 2882190 2882237 13 96 2.5 6.0 4.2 2.5 143 chr3L 2882094 intergenic not near genes chr3L 2882166 intergenic not near genes chr3L 2882237 intergenic not near genes chr3L_13_2880001 chr3L_2880001 RAL-359 1044 chr3L 2904437 2904462 chr3L 2904541 2904566 7 104 2.0 3.0 2.5 2.0 129 chr3L 2904437 intron Shab + chr3L 2904502 intron Shab + chr3L 2904566 intron Shab + chr3L_7_2900001 chr3L_2900001 RAL-359 1045 chr3L 2927825 2927857 chr3L 2936122 2936153 Tirant 4 8295 4.0 2.0 3.0 1.0 8328 chr3L 2927825 intron Shab + chr3L 2931989 intron Shab + chr3L 2936153 intron Shab + chr3L_4_2930001 chr3L_2930001 RAL-359 1046 chr3L 3013431 3013482 chr3L 3013565 3013587 5 122 1.0 0.5 0.8 2.8 156 chr3L 3013431 intergenic not near genes chr3L 3013509 intergenic not near genes chr3L 3013587 intergenic not near genes chr3L_5_3010001 chr3L_3010001 RAL-359 1047 chr3L 3040304 3040355 chr3L 3042113 3042164 S-element 6 1808 2.0 3.5 2.8 1.6 1860 chr3L 3040304 3` UTR CG2162 + chr3L 3041234 intergenic not near genes chr3L 3042164 intergenic Jafrac2 + chr3L_6_3040001 chr3L_3040001 RAL-359 1048 chr3L 3050894 3050924 chr3L 3051001 3051011 5 103 3.5 0.5 2.0 1.7 117 chr3L 3050894 intron CG32485 + chr3L 3050952 intron CG32485 + chr3L 3051011 exon CG32485 + chr3L_5_3050001 chr3L_3050001 RAL-359 1049 chr3L 3051726 3051746 chr3L 3051988 3052008 pogo 6 262 11.0 2.0 6.5 0.8 282 chr3L 3051726 3` UTR CG32485 + chr3L 3051867 intergenic CG32485 + chr3L 3052008 intergenic CG32485 + chr3L_6_3050001 chr3L_3050001 RAL-359 1050 chr3L 3135877 3135925 chr3L 3136184 3136238 11 308 2.5 2.5 2.5 3.1 361 chr3L 3135877 intron CG11537 - chr3L 3136058 intron CG11537 - chr3L 3136238 intron CG11537 - chr3L_11_3135001 chr3L_3135001 RAL-359 1051 chr3L 3259817 3259833 chr3L 3259937 3259949 6 119 1.5 5.0 3.2 1.4 132 chr3L 3259817 intron ckd + chr3L 3259883 intron ckd + chr3L 3259949 intron ckd + chr3L_6_3255001 chr3L_3255001 RAL-359 1052 chr3L 3269081 3269123 chr3L 3269192 3269234 4 111 0.0 1.5 0.8 2.2 153 chr3L 3269081 intergenic CG34265 + chr3L 3269158 intergenic CG34265 + chr3L 3269234 intergenic CG34265 + chr3L_4_3265001 chr3L_3265001 RAL-359 1053 chr3L 3281428 3281460 chr3L 3281943 3281976 Doc 16 509 6.0 8.5 7.2 2.0 548 chr3L 3281428 intron CG12017 + chr3L 3281702 intron CG12017 + chr3L 3281976 intron CG12017 + chr3L_16_3280001 chr3L_3280001 RAL-359 1054 chr3L 3281461 3281469 chr3L 3281941 3281985 Doc 5 509 3.0 8.0 5.5 0.8 524 chr3L 3281461 intron CG12017 + chr3L 3281723 intron CG12017 + chr3L 3281985 intron CG12017 + chr3L_5_3280001 chr3L_3280001 RAL-359 1055 chr3L 3431924 3431970 chr3L 3432041 3432058 5 106 1.5 2.0 1.8 1.8 134 chr3L 3431924 intron eIF5B - chr3L 3431991 intron eIF5B - chr3L 3432058 intron eIF5B - chr3L_5_3430001 chr3L_3430001 RAL-359 1056 chr3L 3470142 3470178 chr3L 3470238 3470274 5 96 0.0 5.0 2.5 1.4 132 chr3L 3470142 intron CG14971 - chr3L 3470208 intron CG14971 - chr3L 3470274 intron CG14971 - chr3L_5_3470001 chr3L_3470001 RAL-359 1057 chr3L 3475072 3475103 chr3L 3475536 3475557 jockey 7 459 0.5 3.5 2.0 2.3 485 chr3L 3475072 intron CG42324 + chr3L 3475314 intron CG42324 + chr3L 3475557 intron CG42324 + chr3L_7_3475001 chr3L_3475001 RAL-359 1058 chr3L 3483528 3483567 chr3L 3483755 3483794 10 226 5.5 4.5 5.0 1.7 266 chr3L 3483528 intron CG42324 + chr3L 3483661 intron CG42324 + chr3L 3483794 intron CG42324 + chr3L_10_3480001 chr3L_3480001 RAL-359 1059 chr3L 3484267 3484319 chr3L 3484379 3484431 8 112 4.0 3.5 3.8 1.7 164 chr3L 3484267 intron,exon CG42324 +,CG43074 - chr3L 3484349 intron,exon CG42324 +,CG43074 - chr3L 3484431 intron,intron CG42324 +,CG43074 - chr3L_8_3480001 chr3L_3480001 RAL-359 1060 chr3L 3513046 3513088 chr3L 3513144 3513186 5 98 2.0 2.0 2.0 1.7 140 chr3L 3513046 intergenic ImpE2 - chr3L 3513116 intergenic ImpE2 - chr3L 3513186 intergenic not near genes chr3L_5_3510001 chr3L_3510001 RAL-359 1061 chr3L 3533612 3533641 chr3L 3533732 3533781 6 130 8.0 0.0 4.0 1.2 169 chr3L 3533612 intron Eip63E + chr3L 3533696 intron Eip63E + chr3L 3533781 intron Eip63E + chr3L_6_3530001 chr3L_3530001 RAL-359 1062 chr3L 3601277 3601329 chr3L 3606607 3606655 copia 10 5329 3.0 4.5 3.8 2.1 5378 chr3L 3601277 intron Eip63E + chr3L 3603966 intron Eip63E + chr3L 3606655 intron Eip63E + chr3L_10_3600001 chr3L_3600001 RAL-359 1063 chr3L 3606920 3606932 chr3L 3607066 3607078 5 146 7.0 0.0 3.5 1.1 158 chr3L 3606920 intron Eip63E + chr3L 3606999 intron Eip63E + chr3L 3607078 intron Eip63E + chr3L_5_3605001 chr3L_3605001 RAL-359 1064 chr3L 3627215 3627260 chr3L 3627340 3627385 14 125 3.0 3.0 3.0 3.5 170 chr3L 3627215 intron dar1 + chr3L 3627300 intron dar1 + chr3L 3627385 intron dar1 + chr3L_14_3625001 chr3L_3625001 RAL-359 1065 chr3L 3766720 3766749 chr3L 3766826 3766855 5 106 6.5 0.0 3.2 1.2 135 chr3L 3766720 intron CG32264 - chr3L 3766788 intron CG32264 - chr3L 3766855 intron CG32264 - chr3L_5_3765001 chr3L_3765001 RAL-359 1066 chr3L 3772199 3772244 chr3L 3772302 3772329 14 98 3.5 0.5 2.0 4.7 130 chr3L 3772199 intron CG32264 - chr3L 3772264 intron CG32264 - chr3L 3772329 intron CG32264 - chr3L_14_3770001 chr3L_3770001 RAL-359 1067 chr3L 3792896 3792941 chr3L 3792992 3793037 14 96 0.0 2.0 1.0 7.0 141 chr3L 3792896 intron CG32264 - chr3L 3792966 intron CG32264 - chr3L 3793037 intron CG32264 - chr3L_14_3790001 chr3L_3790001 RAL-359 1068 chr3L 3797237 3797256 chr3L 3797338 3797359 6 102 2.0 4.0 3.0 1.5 122 chr3L 3797237 intron CG32264 - chr3L 3797298 intron CG32264 - chr3L 3797359 intron CG32264 - chr3L_6_3795001 chr3L_3795001 RAL-359 1069 chr3L 3833734 3833754 chr3L 3833995 3834015 pogo 4 261 3.0 1.5 2.2 1.2 281 chr3L 3833734 intron enc + chr3L 3833874 intron enc + chr3L 3834015 intron enc + chr3L_4_3830001 chr3L_3830001 RAL-359 1070 chr3L 3849463 3849476 chr3L 3849561 3849574 4 98 2.5 2.0 2.2 1.2 111 chr3L 3849463 intron Awh + chr3L 3849518 intron Awh + chr3L 3849574 intron Awh + chr3L_4_3845001 chr3L_3845001 RAL-359 1071 chr3L 3864824 3864842 chr3L 3864927 3864945 10 103 6.5 2.5 4.5 1.8 121 chr3L 3864824 intergenic CR45379 - chr3L 3864884 intergenic CR45379 - chr3L 3864945 intergenic not near genes chr3L_10_3860001 chr3L_3860001 RAL-359 1072 chr3L 3889119 3889146 chr3L 3889220 3889249 6 102 2.0 2.5 2.2 1.9 130 chr3L 3889119 intergenic not near genes chr3L 3889184 intergenic not near genes chr3L 3889249 intergenic not near genes chr3L_6_3885001 chr3L_3885001 RAL-359 1073 chr3L 4058843 4058873 chr3L 4058943 4058973 7 100 3.0 8.0 5.5 1.1 130 chr3L 4058843 3` UTR CG1136 + chr3L 4058908 3` UTR CG1136 + chr3L 4058973 3` UTR CG1136 + chr3L_7_4055001 chr3L_4055001 RAL-359 1074 chr3L 4146818 4146841 chr3L 4146920 4146940 5 101 0.0 8.0 4.0 1.0 122 chr3L 4146818 intergenic not near genes chr3L 4146879 intergenic not near genes chr3L 4146940 intergenic not near genes chr3L_5_4145001 chr3L_4145001 RAL-359 1075 chr3L 4214523 4214541 chr3L 4214684 4214703 5 162 4.0 6.0 5.0 0.8 180 chr3L 4214523 intron CG43367 + chr3L 4214613 intron CG43367 + chr3L 4214703 intron CG43367 + chr3L_5_4210001 chr3L_4210001 RAL-359 1076 chr3L 4277736 4277767 chr3L 4277932 4277980 7 208 2.5 3.5 3.0 1.8 244 chr3L 4277736 3` UTR CG1273 + chr3L 4277858 intergenic CG1273 +,CG1311 + chr3L 4277980 5` UTR CG1311 + chr3L_7_4275001 chr3L_4275001 RAL-359 1077 chr3L 4341330 4341335 chr3L 21448026 21448026 7 17106694 10.5 10.5 10.5 0.6 17106696 chr3L 4341330 intron Cip4 - chr3L 12894678 3` UTR CG14118 + chr3L 21448026 3` UTR Syx7 + chr3L_7_12890001 chr3L_12890001 RAL-359 1078 chr3L 4364178 4364217 chr3L 4364287 4364326 4 109 2.5 3.0 2.8 1.1 148 chr3L 4364178 intergenic Cip4 -,mRpS6 + chr3L 4364252 intergenic Cip4 -,mRpS6 + chr3L 4364326 intergenic mRpS6 +,Cip4 - chr3L_4_4360001 chr3L_4360001 RAL-359 1079 chr3L 4440735 4440765 chr3L 4440833 4440866 4 100 1.5 1.0 1.2 1.8 131 chr3L 4440735 intergenic not near genes chr3L 4440800 intergenic not near genes chr3L 4440866 intergenic not near genes chr3L_4_4440001 chr3L_4440001 RAL-359 1080 chr3L 4547102 4547107 chr3L 4547380 4547392 4 283 5.0 2.5 3.8 0.8 290 chr3L 4547102 intron CG11357 + chr3L 4547247 intron CG11357 + chr3L 4547392 intron CG11357 + chr3L_4_4545001 chr3L_4545001 RAL-359 1081 chr3L 4607245 4607284 chr3L 4607356 4607395 5 111 6.0 5.5 5.8 0.7 150 chr3L 4607245 intron Src64B - chr3L 4607320 intron Src64B - chr3L 4607395 intron Src64B - chr3L_5_4605001 chr3L_4605001 RAL-359 1082 chr3L 4703781 4703811 chr3L 4703891 4703905 5 106 2.5 2.5 2.5 1.4 124 chr3L 4703781 intron,5` UTR RhoGEF64C +,CR43879 + chr3L 4703843 intron,5` UTR RhoGEF64C +,CR43879 + chr3L 4703905 intron,5` UTR RhoGEF64C +,CR43879 + chr3L_5_4700001 chr3L_4700001 RAL-359 1083 chr3L 4705044 4705070 chr3L 4706037 4706057 7 992 4.5 6.0 5.2 1.1 1013 chr3L 4705044 intron RhoGEF64C + chr3L 4705550 intron RhoGEF64C + chr3L 4706057 intron RhoGEF64C + chr3L_7_4705001 chr3L_4705001 RAL-359 1084 chr3L 4837873 4837919 chr3L 4837972 4838014 11 98 2.0 5.0 3.5 2.4 141 chr3L 4837873 3` UTR CG13707 - chr3L 4837944 3` UTR CG13707 - chr3L 4838014 3` UTR CG13707 - chr3L_11_4835001 chr3L_4835001 RAL-359 1085 chr3L 4908895 4908931 chr3L 4909023 4909053 8 126 1.0 2.5 1.8 2.9 158 chr3L 4908895 intergenic not near genes chr3L 4908974 intergenic not near genes chr3L 4909053 intergenic not near genes chr3L_8_4905001 chr3L_4905001 RAL-359 1086 chr3L 4958438 4958443 chr3L 4958513 4958536 4 92 3.0 8.0 5.5 0.6 98 chr3L 4958438 intron Con - chr3L 4958487 intron Con - chr3L 4958536 intron Con - chr3L_4_4955001 chr3L_4955001 RAL-359 1087 chr3L 5034155 5034189 chr3L 5043316 5043361 roo 8 9170 2.5 6.0 4.2 1.5 9206 chr3L 5034155 intron Con - chr3L 5038758 intron Con - chr3L 5043361 intron Con - chr3L_8_5035001 chr3L_5035001 RAL-359 1088 chr3L 5045449 5045476 chr3L 5050243 5050277 Doc 5 4800 3.5 3.0 3.2 1.2 4828 chr3L 5045449 intron Con - chr3L 5047863 intron Con - chr3L 5050277 intron Con - chr3L_5_5045001 chr3L_5045001 RAL-359 1089 chr3L 5089128 5089148 chr3L 5089218 5089246 10 97 0.0 3.5 1.8 3.6 118 chr3L 5089128 intergenic not near genes chr3L 5089187 intergenic not near genes chr3L 5089246 intergenic not near genes chr3L_10_5085001 chr3L_5085001 RAL-359 1090 chr3L 5103594 5103608 chr3L 5103694 5103708 5 100 11.0 0.0 5.5 0.8 114 chr3L 5103594 intergenic not near genes chr3L 5103651 intergenic not near genes chr3L 5103708 intergenic not near genes chr3L_5_5100001 chr3L_5100001 RAL-359 1091 chr3L 5104467 5104511 chr3L 5124621 5124665 18 20154 3.0 2.0 2.5 5.1 20198 chr3L 5104467 intergenic not near genes chr3L 5114566 intergenic not near genes chr3L 5124665 intergenic not near genes chr3L_18_5110001 chr3L_5110001 RAL-359 1092 chr3L 5130920 5130953 chr3L 5131033 5131070 9 119 3.0 1.5 2.2 2.8 150 chr3L 5130920 intergenic not near genes chr3L 5130995 intergenic not near genes chr3L 5131070 intergenic CG15212 + chr3L_9_5130001 chr3L_5130001 RAL-359 1093 chr3L 5251845 5251869 chr3L 5251944 5251968 5 99 0.0 3.5 1.8 1.8 123 chr3L 5251845 intron shep - chr3L 5251906 intron shep - chr3L 5251968 intron shep - chr3L_5_5250001 chr3L_5250001 RAL-359 1094 chr3L 5261147 5261165 chr3L 5261246 5261263 6 99 5.5 2.5 4.0 1.2 116 chr3L 5261147 intron shep - chr3L 5261205 intron shep - chr3L 5261263 intron shep - chr3L_6_5260001 chr3L_5260001 RAL-359 1095 chr3L 5376022 5376041 chr3L 5376118 5376140 6 98 0.0 2.5 1.2 2.7 118 chr3L 5376022 intergenic not near genes chr3L 5376081 intergenic not near genes chr3L 5376140 intergenic not near genes chr3L_6_5375001 chr3L_5375001 RAL-359 1096 chr3L 5388181 5388231 chr3L 5388525 5388574 11 339 3.5 1.0 2.2 3.4 393 chr3L 5388181 intergenic not near genes chr3L 5388378 intergenic not near genes chr3L 5388574 intergenic not near genes chr3L_11_5385001 chr3L_5385001 RAL-359 1097 chr3L 5449515 5449562 chr3L 5449614 5449642 18 98 2.0 4.0 3.0 4.5 127 chr3L 5449515 intergenic not near genes chr3L 5449578 intergenic not near genes chr3L 5449642 intergenic not near genes chr3L_18_5445001 chr3L_5445001 RAL-359 1098 chr3L 5516392 5516439 chr3L 5516507 5516554 9 111 3.0 0.5 1.8 3.2 162 chr3L 5516392 intron Lkr - chr3L 5516473 intron Lkr - chr3L 5516554 intron Lkr - chr3L_9_5515001 chr3L_5515001 RAL-359 1099 chr3L 5561648 5561697 chr3L 5561750 5561799 7 102 1.0 1.5 1.2 3.2 151 chr3L 5561648 intergenic sinu -,Sucb - chr3L 5561724 3` UTR Sucb - chr3L 5561799 3` UTR Sucb - chr3L_7_5560001 chr3L_5560001 RAL-359 1100 chr3L 5613371 5613502 chr3L 5613501 5613649 6 136 0.0 0.0 0.0 6.0 278 chr3L 5613371 intergenic not near genes chr3L 5613510 intergenic not near genes chr3L 5613649 intergenic not near genes chr3L_6_5610001 chr3L_5610001 RAL-359 1101 chr3L 5683240 5683281 chr3L 5683348 5683388 5 107 0.5 1.5 1.0 2.5 148 chr3L 5683240 intron sif + chr3L 5683314 intron sif + chr3L 5683388 intron sif + chr3L_5_5680001 chr3L_5680001 RAL-359 1102 chr3L 5836361 5836396 chr3L 5836462 5836497 9 100 4.0 2.5 3.2 2.1 136 chr3L 5836361 intron vn - chr3L 5836429 intron vn - chr3L 5836497 intron vn - chr3L_9_5835001 chr3L_5835001 RAL-359 1103 chr3L 5910018 5910063 chr3L 5910278 5910324 pogo 11 260 6.5 4.5 5.5 1.7 306 chr3L 5910018 intron CG13288 + chr3L 5910171 intron CG13288 + chr3L 5910324 intron CG13288 + chr3L_11_5910001 chr3L_5910001 RAL-359 1104 chr3L 5926307 5926348 chr3L 5926510 5926557 BS 11 201 4.5 4.0 4.2 2.1 250 chr3L 5926307 intron Vap-33B + chr3L 5926432 intron Vap-33B + chr3L 5926557 intron Vap-33B + chr3L_11_5925001 chr3L_5925001 RAL-359 1105 chr3L 5946059 5946079 chr3L 5946149 5946172 4 90 6.5 5.5 6.0 0.6 113 chr3L 5946059 intron CG33993 - chr3L 5946116 intron CG33993 - chr3L 5946172 intron CG33993 - chr3L_4_5945001 chr3L_5945001 RAL-359 1106 chr3L 6001678 6001714 chr3L 6004398 6004434 jockey 6 2720 2.5 1.0 1.8 2.1 2756 chr3L 6001678 intron PVRAP + chr3L 6003056 intron PVRAP + chr3L 6004434 intron PVRAP + chr3L_6_6000001 chr3L_6000001 RAL-359 1107 chr3L 6040349 6040386 chr3L 6042725 6042762 Doc 10 2376 3.5 2.5 3.0 2.5 2413 chr3L 6040349 intergenic Jon65Aiv + chr3L 6041556 intergenic not near genes chr3L 6042762 intergenic not near genes chr3L_10_6040001 chr3L_6040001 RAL-359 1108 chr3L 6065005 6065042 chr3L 6065102 6065139 8 96 4.0 3.0 3.5 1.8 134 chr3L 6065005 intergenic not near genes chr3L 6065072 intergenic not near genes chr3L 6065139 intergenic not near genes chr3L_8_6065001 chr3L_6065001 RAL-359 1109 chr3L 6116687 6116723 chr3L 6116791 6116827 10 104 3.0 4.0 3.5 2.2 140 chr3L 6116687 intron Ets65A + chr3L 6116757 intron Ets65A + chr3L 6116827 intron Ets65A + chr3L_10_6115001 chr3L_6115001 RAL-359 1110 chr3L 6159854 6159893 chr3L 6159960 6160003 11 110 2.0 3.5 2.8 2.9 149 chr3L 6159854 intergenic not near genes chr3L 6159928 intergenic not near genes chr3L 6160003 intergenic not near genes chr3L_11_6155001 chr3L_6155001 RAL-359 1111 chr3L 6169114 6169134 chr3L 6169213 6169233 6 99 8.0 6.5 7.2 0.7 119 chr3L 6169114 3` UTR CG10289 - chr3L 6169174 3` UTR CG10289 - chr3L 6169233 3` UTR CG10289 - chr3L_6_6165001 chr3L_6165001 RAL-359 1112 chr3L 6185581 6185633 chr3L 6185679 6185731 17 98 4.5 5.5 5.0 2.8 150 chr3L 6185581 exon CG43293 + chr3L 6185656 intron CG43293 + chr3L 6185731 exon CG43293 + chr3L_17_6185001 chr3L_6185001 RAL-359 1113 chr3L 6220905 6220945 chr3L 6230077 6230117 roo 12 9170 3.0 6.0 4.5 2.2 9212 chr3L 6220905 5` UTR pncr008:3L + chr3L 6225511 intergenic not near genes chr3L 6230117 intergenic not near genes chr3L_12_6225001 chr3L_6225001 RAL-359 1114 chr3L 6266625 6266663 chr3L 6266976 6267012 10 348 6.5 5.0 5.8 1.5 387 chr3L 6266625 intergenic not near genes chr3L 6266818 intergenic not near genes chr3L 6267012 intergenic not near genes chr3L_10_6265001 chr3L_6265001 RAL-359 1115 chr3L 6267294 6267344 chr3L 6267402 6267452 14 106 2.0 2.5 2.2 4.4 158 chr3L 6267294 intergenic not near genes chr3L 6267373 intergenic not near genes chr3L 6267452 intergenic not near genes chr3L_14_6265001 chr3L_6265001 RAL-359 1116 chr3L 6334989 6335037 chr3L 6335480 6335528 297 11 490 1.5 3.5 2.5 3.1 539 chr3L 6334989 intron CG13300 - chr3L 6335258 intron CG13300 - chr3L 6335528 intron CG13300 - chr3L_11_6335001 chr3L_6335001 RAL-359 1117 chr3L 6401257 6401306 chr3L 6401355 6401395 20 97 5.0 6.5 5.8 2.9 138 chr3L 6401257 intron CG42747 + chr3L 6401326 intron CG42747 + chr3L 6401395 intron CG42747 + chr3L_20_6400001 chr3L_6400001 RAL-359 1118 chr3L 6405640 6405685 chr3L 6432124 6432169 roo 5 26484 5.0 5.0 5.0 0.8 26529 chr3L 6405640 intron CG42747 + chr3L 6418904 intron CG42747 + chr3L 6432169 intron CG42747 + chr3L_5_6415001 chr3L_6415001 RAL-359 1119 chr3L 6512256 6512264 chr3L 6512359 6512361 4 103 3.5 3.0 3.2 1.0 105 chr3L 6512256 intron sfl + chr3L 6512308 intron sfl + chr3L 6512361 intron sfl + chr3L_4_6510001 chr3L_6510001 RAL-359 1120 chr3L 6512265 6512281 chr3L 6512358 6512387 4 95 3.5 3.0 3.2 1.0 122 chr3L 6512265 intron sfl + chr3L 6512326 intron sfl + chr3L 6512387 intron sfl + chr3L_4_6510001 chr3L_6510001 RAL-359 1121 chr3L 6573649 6573681 chr3L 6573762 6573781 7 109 1.5 4.5 3.0 1.8 132 chr3L 6573649 intron,intron CG18769 +,jv - chr3L 6573715 intron,intron CG18769 +,jv - chr3L 6573781 intron,intron CG18769 +,jv - chr3L_7_6570001 chr3L_6570001 RAL-359 1122 chr3L 6580393 6580403 chr3L 6580516 6580527 5 124 6.0 5.5 5.8 0.7 134 chr3L 6580393 intron,intron CG18769 +,jv - chr3L 6580460 intron,intron CG18769 +,jv - chr3L 6580527 intron,intron CG18769 +,jv - chr3L_5_6580001 chr3L_6580001 RAL-359 1123 chr3L 6580408 6580436 chr3L 6580507 6580560 4 117 3.5 4.0 3.8 0.8 152 chr3L 6580408 intron,intron CG18769 +,jv - chr3L 6580484 intron,intron CG18769 +,jv - chr3L 6580560 intron,intron CG18769 +,jv - chr3L_4_6580001 chr3L_6580001 RAL-359 1124 chr3L 6593772 6593814 chr3L 6593879 6593921 7 107 5.5 4.5 5.0 1.2 149 chr3L 6593772 3` UTR CG18769 + chr3L 6593846 3` UTR CG18769 + chr3L 6593921 3` UTR CG18769 + chr3L_7_6590001 chr3L_6590001 RAL-359 1125 chr3L 6620598 6620606 chr3L 6621058 6621066 Rt1c 4 460 4.0 13.0 8.5 0.4 468 chr3L 6620598 intergenic not near genes chr3L 6620832 intergenic not near genes chr3L 6621066 intergenic not near genes chr3L_4_6620001 chr3L_6620001 RAL-359 1126 chr3L 6835912 6835921 chr3L 6836010 6836019 4 98 3.5 2.0 2.8 1.1 107 chr3L 6835912 intergenic not near genes chr3L 6835966 intergenic not near genes chr3L 6836019 intergenic not near genes chr3L_4_6835001 chr3L_6835001 RAL-359 1127 chr3L 6855914 6855939 chr3L 6860720 6860745 Doc 6 4803 1.5 2.0 1.8 2.1 4831 chr3L 6855914 intergenic not near genes chr3L 6858330 intergenic not near genes chr3L 6860745 intergenic not near genes chr3L_6_6855001 chr3L_6855001 RAL-359 1128 chr3L 6887501 6887534 chr3L 6895013 6895046 roo 4 7506 3.5 0.0 1.8 1.4 7545 chr3L 6887501 intergenic not near genes chr3L 6891274 intergenic not near genes chr3L 6895046 intergenic not near genes chr3L_4_6890001 chr3L_6890001 RAL-359 1129 chr3L 6994876 6994915 chr3L 6995507 6995546 BS 7 631 1.5 4.0 2.8 1.8 670 chr3L 6994876 intergenic bin + chr3L 6995211 intergenic not near genes chr3L 6995546 intergenic not near genes chr3L_7_6995001 chr3L_6995001 RAL-359 1130 chr3L 7041906 7041923 chr3L 7042003 7042020 8 97 1.5 4.5 3.0 2.0 114 chr3L 7041906 intron Mp + chr3L 7041963 intron Mp + chr3L 7042020 intron Mp + chr3L_8_7040001 chr3L_7040001 RAL-359 1131 chr3L 7061387 7061402 chr3L 7061493 7061508 5 104 5.0 4.5 4.8 0.9 121 chr3L 7061387 intron CG8641 - chr3L 7061448 intron CG8641 - chr3L 7061508 intron CG8641 - chr3L_5_7060001 chr3L_7060001 RAL-359 1132 chr3L 7107087 7107119 chr3L 7107192 7107219 4 101 0.5 0.0 0.2 3.3 132 chr3L 7107087 intron form3 + chr3L 7107153 intron form3 + chr3L 7107219 intron form3 + chr3L_4_7105001 chr3L_7105001 RAL-359 1133 chr3L 7129399 7129450 chr3L 7129662 7129713 15 263 2.0 1.5 1.8 5.4 314 chr3L 7129399 3` UTR CG15829 + chr3L 7129556 3` UTR CG15829 + chr3L 7129713 intergenic CG15829 + chr3L_15_7125001 chr3L_7125001 RAL-359 1134 chr3L 7150866 7150902 chr3L 7150957 7150998 6 95 1.0 3.5 2.2 1.9 132 chr3L 7150866 intron corn - chr3L 7150932 intron corn - chr3L 7150998 intron corn - chr3L_6_7150001 chr3L_7150001 RAL-359 1135 chr3L 7227351 7227398 chr3L 7227507 7227554 8 156 5.5 3.0 4.2 1.5 203 chr3L 7227351 intergenic not near genes chr3L 7227452 intergenic not near genes chr3L 7227554 intergenic not near genes chr3L_8_7225001 chr3L_7225001 RAL-359 1136 chr3L 7377299 7377339 chr3L 7380424 7380464 297 11 3123 2.5 4.5 3.5 2.4 3165 chr3L 7377299 intron SMSr - chr3L 7378882 intron SMSr - chr3L 7380464 intron SMSr - chr3L_11_7375001 chr3L_7375001 RAL-359 1137 chr3L 7436097 7436142 chr3L 7436198 7436243 8 98 3.0 5.5 4.2 1.5 146 chr3L 7436097 intron CG42458 + chr3L 7436170 intron CG42458 + chr3L 7436243 intron CG42458 + chr3L_8_7435001 chr3L_7435001 RAL-359 1138 chr3L 7461241 7461293 chr3L 7461335 7461391 15 96 3.0 3.0 3.0 3.8 150 chr3L 7461241 intergenic not near genes chr3L 7461316 intergenic not near genes chr3L 7461391 intergenic not near genes chr3L_15_7460001 chr3L_7460001 RAL-359 1139 chr3L 7498746 7498780 chr3L 7503543 7503577 F-element 8 4797 7.0 7.5 7.2 1.0 4831 chr3L 7498746 5` UTR CG8539 - chr3L 7501162 intergenic not near genes chr3L 7503577 intergenic not near genes chr3L_8_7500001 chr3L_7500001 RAL-359 1140 chr3L 7505396 7505443 chr3L 7505492 7505539 4 96 1.5 5.0 3.2 1.0 143 chr3L 7505396 intergenic CG7548 - chr3L 7505468 intergenic CG7548 - chr3L 7505539 3` UTR CG7548 - chr3L_4_7505001 chr3L_7505001 RAL-359 1141 chr3L 7591127 7591180 chr3L 7591237 7591276 8 101 3.0 3.0 3.0 2.0 149 chr3L 7591127 intergenic CG7716 - chr3L 7591202 intergenic CG7716 - chr3L 7591276 intergenic CG7716 - chr3L_8_7590001 chr3L_7590001 RAL-359 1142 chr3L 7691818 7691853 chr3L 7691929 7691965 5 112 5.5 5.0 5.2 0.8 147 chr3L 7691818 intron,intron,intron CG32373 +,Ank2 -,CG44195 - chr3L 7691892 intron,intron,intron CG32373 +,Ank2 -,CG44195 - chr3L 7691965 intron,intron,intron CG32373 +,Ank2 -,CG44195 - chr3L_5_7690001 chr3L_7690001 RAL-359 1143 chr3L 7793696 7793737 chr3L 7800768 7800809 297 16 7072 5.0 6.0 5.5 2.5 7113 chr3L 7793696 intron CG32369 - chr3L 7797252 intron CG32369 - chr3L 7800809 intron CG32369 - chr3L_16_7795001 chr3L_7795001 RAL-359 1144 chr3L 7806132 7806176 chr3L 7806235 7806279 5 103 3.5 0.0 1.8 1.8 147 chr3L 7806132 intron CG32369 - chr3L 7806206 intron CG32369 - chr3L 7806279 intron CG32369 - chr3L_5_7805001 chr3L_7805001 RAL-359 1145 chr3L 7843145 7843158 chr3L 7843257 7843270 5 112 3.5 3.0 3.2 1.2 125 chr3L 7843145 intron Pdp1 - chr3L 7843208 intron Pdp1 - chr3L 7843270 intron Pdp1 - chr3L_5_7840001 chr3L_7840001 RAL-359 1146 chr3L 7876095 7876125 chr3L 7876194 7876224 4 99 0.0 0.0 0.0 4.0 129 chr3L 7876095 intron CG32365 + chr3L 7876160 intron CG32365 + chr3L 7876224 intron CG32365 + chr3L_4_7875001 chr3L_7875001 RAL-359 1147 chr3L 7886495 7886543 chr3L 7889033 7889080 Stalker4 9 2536 2.0 3.0 2.5 2.6 2585 chr3L 7886495 intron CG32365 + chr3L 7887788 intron CG32365 + chr3L 7889080 intron CG32365 + chr3L_9_7885001 chr3L_7885001 RAL-359 1148 chr3L 7916823 7916859 chr3L 7926014 7926049 roo 13 9191 4.5 7.0 5.8 1.9 9226 chr3L 7916823 3` UTR syd - chr3L 7921436 intron syd - chr3L 7926049 3` UTR syd - chr3L_13_7920001 chr3L_7920001 RAL-359 1149 chr3L 7985353 7985391 chr3L 7987701 7987739 NOF 8 2346 3.0 4.5 3.8 1.7 2386 chr3L 7985353 intron nmo + chr3L 7986546 intron nmo + chr3L 7987739 intron nmo + chr3L_8_7985001 chr3L_7985001 RAL-359 1150 chr3L 8019681 8019730 chr3L 8024113 8024159 NOF 6 4426 3.0 1.5 2.2 1.9 4478 chr3L 8019681 intron nmo + chr3L 8021920 intron nmo + chr3L 8024159 intron nmo + chr3L_6_8020001 chr3L_8020001 RAL-359 1151 chr3L 8035034 8035070 chr3L 8035391 8035427 5 357 4.0 5.0 4.5 0.9 393 chr3L 8035034 intron nmo + chr3L 8035230 intron nmo + chr3L 8035427 intron nmo + chr3L_5_8035001 chr3L_8035001 RAL-359 1152 chr3L 8060026 8060071 chr3L 8060146 8060190 5 119 1.5 2.5 2.0 1.7 164 chr3L 8060026 intergenic not near genes chr3L 8060108 intergenic not near genes chr3L 8060190 intergenic not near genes chr3L_5_8060001 chr3L_8060001 RAL-359 1153 chr3L 8078536 8078578 chr3L 8078656 8078698 5 119 3.0 0.0 1.5 2.0 162 chr3L 8078536 intron Ect4 + chr3L 8078617 intron Ect4 + chr3L 8078698 intron Ect4 + chr3L_5_8075001 chr3L_8075001 RAL-359 1154 chr3L 8207100 8207146 chr3L 8207201 8207247 5 101 2.0 2.5 2.2 1.6 147 chr3L 8207100 intergenic not near genes chr3L 8207174 intergenic not near genes chr3L 8207247 intergenic not near genes chr3L_5_8205001 chr3L_8205001 RAL-359 1155 chr3L 8295787 8295819 chr3L 8295965 8295986 10 176 0.0 8.5 4.2 1.9 199 chr3L 8295787 intergenic CG7201 - chr3L 8295886 intergenic not near genes chr3L 8295986 intergenic not near genes chr3L_10_8295001 chr3L_8295001 RAL-359 1156 chr3L 8319420 8319472 chr3L 8319515 8319568 10 96 3.5 3.5 3.5 2.2 148 chr3L 8319420 intergenic CG43059 - chr3L 8319494 intergenic not near genes chr3L 8319568 intergenic not near genes chr3L_10_8315001 chr3L_8315001 RAL-359 1157 chr3L 8443562 8443582 chr3L 8443662 8443683 10 100 3.5 6.0 4.8 1.7 121 chr3L 8443562 3` UTR CG6983 - chr3L 8443622 3` UTR CG6983 - chr3L 8443683 3` UTR CG6983 - chr3L_10_8440001 chr3L_8440001 RAL-359 1158 chr3L 8498297 8498326 chr3L 8505784 8505813 blood 6 7487 2.0 8.5 5.2 1.0 7516 chr3L 8498297 intron CG43163 - chr3L 8502055 intron CG43163 - chr3L 8505813 intron CG43163 - chr3L_6_8500001 chr3L_8500001 RAL-359 1159 chr3L 8584903 8584949 chr3L 8585017 8585063 17 114 2.5 3.5 3.0 4.2 160 chr3L 8584903 intron CG43078 + chr3L 8584983 intron CG43078 + chr3L 8585063 intron CG43078 + chr3L_17_8580001 chr3L_8580001 RAL-359 1160 chr3L 8691140 8691187 chr3L 8691242 8691288 16 100 4.0 6.0 5.0 2.7 148 chr3L 8691140 intergenic not near genes chr3L 8691214 intergenic not near genes chr3L 8691288 intergenic not near genes chr3L_16_8690001 chr3L_8690001 RAL-359 1161 chr3L 8772042 8772085 chr3L 8772134 8772183 13 98 4.0 4.0 4.0 2.6 141 chr3L 8772042 intron Fhos + chr3L 8772112 intron Fhos + chr3L 8772183 intron Fhos + chr3L_13_8770001 chr3L_8770001 RAL-359 1162 chr3L 8777595 8777640 chr3L 8777713 8777758 10 115 2.5 2.5 2.5 2.9 163 chr3L 8777595 intron Fhos + chr3L 8777676 intron Fhos + chr3L 8777758 intron Fhos + chr3L_10_8775001 chr3L_8775001 RAL-359 1163 chr3L 8827491 8827515 chr3L 8827601 8827609 5 106 5.5 5.5 5.5 0.8 118 chr3L 8827491 intergenic dally + chr3L 8827550 5` UTR dally + chr3L 8827609 5` UTR dally + chr3L_5_8825001 chr3L_8825001 RAL-359 1164 chr3L 8830739 8830782 chr3L 8830859 8830903 9 121 2.5 1.5 2.0 3.0 164 chr3L 8830739 intron dally + chr3L 8830821 intron dally + chr3L 8830903 intron dally + chr3L_9_8830001 chr3L_8830001 RAL-359 1165 chr3L 8849205 8849220 chr3L 8849295 8849320 5 95 3.5 3.0 3.2 1.2 115 chr3L 8849205 intron dally + chr3L 8849262 intron dally + chr3L 8849320 intron dally + chr3L_5_8845001 chr3L_8845001 RAL-359 1166 chr3L 8884402 8884418 chr3L 8884621 8884623 4 214 3.5 0.0 1.8 1.4 221 chr3L 8884402 intron dally + chr3L 8884512 intron dally + chr3L 8884623 intron dally + chr3L_4_8880001 chr3L_8880001 RAL-359 1167 chr3L 8928249 8928292 chr3L 8928345 8928388 6 96 4.0 2.0 3.0 1.5 139 chr3L 8928249 intron Tsp66E + chr3L 8928318 intron Tsp66E + chr3L 8928388 intron Tsp66E + chr3L_6_8925001 chr3L_8925001 RAL-359 1168 chr3L 9003932 9003966 chr3L 9004035 9004071 4 103 2.5 4.5 3.5 0.9 139 chr3L 9003932 intergenic not near genes chr3L 9004002 intergenic not near genes chr3L 9004071 intergenic not near genes chr3L_4_9000001 chr3L_9000001 RAL-359 1169 chr3L 9011116 9011156 chr3L 9011222 9011263 5 107 0.5 1.5 1.0 2.5 147 chr3L 9011116 intergenic not near genes chr3L 9011190 intergenic not near genes chr3L 9011263 intergenic not near genes chr3L_5_9010001 chr3L_9010001 RAL-359 1170 chr3L 9024490 9024533 chr3L 9024590 9024625 5 98 1.5 2.5 2.0 1.7 135 chr3L 9024490 intergenic not near genes chr3L 9024558 intergenic not near genes chr3L 9024625 intergenic not near genes chr3L_5_9020001 chr3L_9020001 RAL-359 1171 chr3L 9076912 9076926 chr3L 9084492 9084506 412 6 7579 11.5 3.0 7.2 0.7 7594 chr3L 9076912 exon Tequila + chr3L 9080709 intron Tequila + chr3L 9084506 exon Tequila + chr3L_6_9080001 chr3L_9080001 RAL-359 1172 chr3L 9076931 9076953 chr3L 9084486 9084529 412 4 7573 5.0 2.5 3.8 0.8 7598 chr3L 9076931 exon Tequila + chr3L 9080730 intron Tequila + chr3L 9084529 exon Tequila + chr3L_4_9080001 chr3L_9080001 RAL-359 1173 chr3L 9130548 9130582 chr3L 9134326 9134359 412 5 3778 4.5 3.5 4.0 1.0 3811 chr3L 9130548 intergenic bol - chr3L 9132454 intergenic not near genes chr3L 9134359 intergenic Dhpr + chr3L_5_9130001 chr3L_9130001 RAL-359 1174 chr3L 9164679 9164709 chr3L 9166165 9166195 hobo 6 1484 6.5 0.0 3.2 1.4 1516 chr3L 9164679 intron Rdl - chr3L 9165437 intron Rdl - chr3L 9166195 intron Rdl - chr3L_6_9165001 chr3L_9165001 RAL-359 1175 chr3L 9209773 9209827 chr3L 9209893 9209947 10 119 3.0 2.5 2.8 2.6 174 chr3L 9209773 intergenic not near genes chr3L 9209860 intergenic not near genes chr3L 9209947 intergenic not near genes chr3L_10_9205001 chr3L_9205001 RAL-359 1176 chr3L 9219244 9219259 chr3L 9219920 9219935 jockey 5 686 6.0 5.0 5.5 0.8 691 chr3L 9219244 intergenic not near genes chr3L 9219590 intergenic not near genes chr3L 9219935 intergenic not near genes chr3L_5_9215001 chr3L_9215001 RAL-359 1177 chr3L 9219276 9219277 chr3L 9219919 9219948 jockey 4 659 2.5 4.5 3.5 0.9 672 chr3L 9219276 intergenic not near genes chr3L 9219612 intergenic not near genes chr3L 9219948 intergenic not near genes chr3L_4_9215001 chr3L_9215001 RAL-359 1178 chr3L 9270607 9270646 chr3L 9278382 9278399 roo 5 7771 2.0 3.0 2.5 1.4 7792 chr3L 9270607 intron GluRIB + chr3L 9274503 intron GluRIB + chr3L 9278399 exon GluRIB + chr3L_5_9270001 chr3L_9270001 RAL-359 1179 chr3L 9309506 9309552 chr3L 9312865 9312911 11 3357 2.0 3.0 2.5 3.1 3405 chr3L 9309506 intergenic not near genes chr3L 9311208 intergenic not near genes chr3L 9312911 intergenic not near genes chr3L_11_9310001 chr3L_9310001 RAL-359 1180 chr3L 9315623 9315648 chr3L 9315748 9315753 6 120 0.0 0.0 0.0 6.0 130 chr3L 9315623 intergenic not near genes chr3L 9315688 intergenic not near genes chr3L 9315753 intergenic not near genes chr3L_6_9315001 chr3L_9315001 RAL-359 1181 chr3L 9357485 9357538 chr3L 9357715 9357768 21 233 32.0 36.0 34.0 0.6 283 chr3L 9357485 intron UGP - chr3L 9357626 intron UGP - chr3L 9357768 intron UGP - chr3L_21_9355001 chr3L_9355001 RAL-359 1182 chr3L 9359578 9359613 chr3L 9359689 9359724 10 110 5.5 7.5 6.5 1.3 146 chr3L 9359578 3` UTR CG32039 + chr3L 9359651 3` UTR CG32039 + chr3L 9359724 3` UTR CG32039 + chr3L_10_9355001 chr3L_9355001 RAL-359 1183 chr3L 9389411 9389420 chr3L 9389540 9389549 6 129 7.0 6.0 6.5 0.8 138 chr3L 9389411 intron CG4080 - chr3L 9389480 intron CG4080 - chr3L 9389549 intron CG4080 - chr3L_6_9385001 chr3L_9385001 RAL-359 1184 chr3L 9390826 9390867 chr3L 9390976 9391017 6 150 4.0 2.5 3.2 1.4 191 chr3L 9390826 intron CG4080 - chr3L 9390922 intron CG4080 - chr3L 9391017 intron CG4080 - chr3L_6_9390001 chr3L_9390001 RAL-359 1185 chr3L 9392106 9392120 chr3L 9392203 9392218 5 98 5.5 0.0 2.8 1.3 112 chr3L 9392106 intron CG4080 - chr3L 9392162 intron CG4080 - chr3L 9392218 intron CG4080 - chr3L_5_9390001 chr3L_9390001 RAL-359 1186 chr3L 9443493 9443541 chr3L 9445304 9445347 S-element 14 1807 3.0 5.0 4.0 2.8 1854 chr3L 9443493 intron CG33926 + chr3L 9444420 intron CG33926 + chr3L 9445347 intron CG33926 + chr3L_14_9440001 chr3L_9440001 RAL-359 1187 chr3L 9501682 9501715 chr3L 9502188 9502221 roo 8 505 4.0 1.0 2.5 2.3 539 chr3L 9501682 intron path - chr3L 9501952 intron path - chr3L 9502221 intron path - chr3L_8_9500001 chr3L_9500001 RAL-359 1188 chr3L 9510909 9510954 chr3L 9511022 9511053 4 109 0.0 3.0 1.5 1.6 144 chr3L 9510909 intron RpS9 - chr3L 9510981 intron RpS9 - chr3L 9511053 intron RpS9 - chr3L_4_9510001 chr3L_9510001 RAL-359 1189 chr3L 9513427 9513469 chr3L 9513534 9513576 16 107 1.5 4.0 2.8 4.2 149 chr3L 9513427 intergenic CG33702 - chr3L 9513502 intergenic CG33702 - chr3L 9513576 intergenic CG33702 - chr3L_16_9510001 chr3L_9510001 RAL-359 1190 chr3L 9532475 9532506 chr3L 9532589 9532622 5 116 0.5 2.5 1.5 2.0 147 chr3L 9532475 intergenic not near genes chr3L 9532548 intergenic not near genes chr3L 9532622 intergenic not near genes chr3L_5_9530001 chr3L_9530001 RAL-359 1191 chr3L 9571077 9571128 chr3L 9571182 9571233 13 105 4.0 4.0 4.0 2.6 156 chr3L 9571077 intron CG42673 + chr3L 9571155 intron CG42673 + chr3L 9571233 intron CG42673 + chr3L_13_9570001 chr3L_9570001 RAL-359 1192 chr3L 9575890 9575949 chr3L 9580988 9581047 jockey 8 5096 2.5 5.0 3.8 1.7 5157 chr3L 9575890 intron CG42673 + chr3L 9578468 intron CG42673 + chr3L 9581047 intron CG42673 + chr3L_8_9575001 chr3L_9575001 RAL-359 1193 chr3L 9629714 9629767 chr3L 9629810 9629863 8 96 2.5 1.5 2.0 2.7 149 chr3L 9629714 intron CG8336 + chr3L 9629788 intron CG8336 + chr3L 9629863 intron CG8336 + chr3L_8_9625001 chr3L_9625001 RAL-359 1194 chr3L 9635558 9635601 chr3L 9635655 9635698 10 97 5.0 3.5 4.2 1.9 140 chr3L 9635558 intron fry - chr3L 9635628 intron fry - chr3L 9635698 exon fry - chr3L_10_9635001 chr3L_9635001 RAL-359 1195 chr3L 9741602 9741653 chr3L 9741714 9741765 11 110 1.5 2.5 2.0 3.7 163 chr3L 9741602 intron,intron CG42268 -,CR44348 + chr3L 9741684 intron,intron CG42268 -,CR44348 + chr3L 9741765 intron,intron CG42268 -,CR44348 + chr3L_11_9740001 chr3L_9740001 RAL-359 1196 chr3L 9775349 9775387 chr3L 9775728 9775763 5 379 0.5 5.0 2.8 1.3 414 chr3L 9775349 intron CG8177 + chr3L 9775556 intron CG8177 + chr3L 9775763 intron CG8177 + chr3L_5_9775001 chr3L_9775001 RAL-359 1197 chr3L 9918881 9918912 chr3L 9918983 9919027 7 112 3.0 3.0 3.0 1.8 146 chr3L 9918881 intron CG34356 + chr3L 9918954 intron CG34356 + chr3L 9919027 intron CG34356 + chr3L_7_9915001 chr3L_9915001 RAL-359 1198 chr3L 9929667 9929687 chr3L 9938468 9938488 roo 5 8801 6.0 5.5 5.8 0.7 8821 chr3L 9929667 intron CG34356 + chr3L 9934078 intron CG34356 + chr3L 9938488 intron CG34356 + chr3L_5_9930001 chr3L_9930001 RAL-359 1199 chr3L 9942400 9942417 chr3L 9942487 9942516 10 97 2.0 1.5 1.8 3.6 116 chr3L 9942400 intron CG34356 + chr3L 9942458 intron CG34356 + chr3L 9942516 intron CG34356 + chr3L_10_9940001 chr3L_9940001 RAL-359 1200 chr3L 10085446 10085467 chr3L 10085574 10085595 7 128 4.0 2.0 3.0 1.8 149 chr3L 10085446 intron dpr6 + chr3L 10085520 intron dpr6 + chr3L 10085595 intron dpr6 + chr3L_7_10085001 chr3L_10085001 RAL-359 1201 chr3L 10099145 10099185 chr3L 10099278 10099313 10 131 1.0 4.5 2.8 2.6 168 chr3L 10099145 intron dpr6 + chr3L 10099229 intron dpr6 + chr3L 10099313 intron dpr6 + chr3L_10_10095001 chr3L_10095001 RAL-359 1202 chr3L 10198611 10198646 chr3L 10198709 10198744 10 98 4.0 5.0 4.5 1.8 133 chr3L 10198611 intron ect - chr3L 10198678 intron ect - chr3L 10198744 intron ect - chr3L_10_10195001 chr3L_10195001 RAL-359 1203 chr3L 10214713 10214829 chr3L 10214820 10214946 6 128 0.0 0.0 0.0 6.0 233 chr3L 10214713 intergenic not near genes chr3L 10214830 intergenic not near genes chr3L 10214946 intergenic not near genes chr3L_6_10210001 chr3L_10210001 RAL-359 1204 chr3L 10222747 10222771 chr3L 10222847 10222871 5 100 1.0 3.5 2.2 1.6 124 chr3L 10222747 intron scramb1 - chr3L 10222809 intron scramb1 - chr3L 10222871 intron scramb1 - chr3L_5_10220001 chr3L_10220001 RAL-359 1205 chr3L 10249109 10249128 chr3L 10249206 10249225 7 96 0.0 7.0 3.5 1.6 116 chr3L 10249109 intergenic not near genes chr3L 10249167 intergenic not near genes chr3L 10249225 intergenic not near genes chr3L_7_10245001 chr3L_10245001 RAL-359 1206 chr3L 10272506 10272525 chr3L 10272618 10272652 5 123 4.5 4.0 4.2 1.0 146 chr3L 10272506 intergenic not near genes chr3L 10272579 intergenic not near genes chr3L 10272652 intergenic not near genes chr3L_5_10270001 chr3L_10270001 RAL-359 1207 chr3L 10308738 10308762 chr3L 10308833 10308859 5 96 1.0 4.0 2.5 1.4 121 chr3L 10308738 intergenic not near genes chr3L 10308798 intergenic not near genes chr3L 10308859 intergenic not near genes chr3L_5_10305001 chr3L_10305001 RAL-359 1208 chr3L 10414929 10414971 chr3L 10417321 10417363 Doc 7 2389 0.0 4.5 2.2 2.2 2434 chr3L 10414929 intergenic CG12362 + chr3L 10416146 intergenic not near genes chr3L 10417363 intergenic not near genes chr3L_7_10415001 chr3L_10415001 RAL-359 1209 chr3L 10417570 10417601 chr3L 10417656 10417692 10 89 3.5 2.5 3.0 2.5 122 chr3L 10417570 intergenic not near genes chr3L 10417631 intergenic not near genes chr3L 10417692 intergenic not near genes chr3L_10_10415001 chr3L_10415001 RAL-359 1210 chr3L 10450676 10450716 chr3L 10450776 10450816 9 100 0.0 6.0 3.0 2.2 140 chr3L 10450676 intergenic not near genes chr3L 10450746 intergenic not near genes chr3L 10450816 intergenic not near genes chr3L_9_10450001 chr3L_10450001 RAL-359 1211 chr3L 10509465 10509508 chr3L 10509614 10509646 6 143 2.5 0.0 1.2 2.7 181 chr3L 10509465 intron A2bp1 + chr3L 10509556 intron A2bp1 + chr3L 10509646 intron A2bp1 + chr3L_6_10505001 chr3L_10505001 RAL-359 1212 chr3L 10532737 10532775 chr3L 10532836 10532865 11 97 1.5 2.5 2.0 3.7 128 chr3L 10532737 intron A2bp1 + chr3L 10532801 intron A2bp1 + chr3L 10532865 intron A2bp1 + chr3L_11_10530001 chr3L_10530001 RAL-359 1213 chr3L 10584269 10584299 chr3L 10584376 10584406 9 107 5.5 2.5 4.0 1.8 137 chr3L 10584269 intron A2bp1 + chr3L 10584338 intron A2bp1 + chr3L 10584406 intron A2bp1 + chr3L_9_10580001 chr3L_10580001 RAL-359 1214 chr3L 10600439 10600477 chr3L 10600541 10600579 5 102 1.5 1.0 1.2 2.3 140 chr3L 10600439 intergenic not near genes chr3L 10600509 intergenic not near genes chr3L 10600579 intergenic not near genes chr3L_5_10600001 chr3L_10600001 RAL-359 1215 chr3L 10621838 10621876 chr3L 10621944 10621983 4 106 1.5 4.0 2.8 1.1 145 chr3L 10621838 intergenic not near genes chr3L 10621910 intergenic not near genes chr3L 10621983 intergenic not near genes chr3L_4_10620001 chr3L_10620001 RAL-359 1216 chr3L 10658058 10658187 chr3L 10658155 10658334 16 119 0.0 0.0 0.0 16.0 276 chr3L 10658058 intron CG32066 - chr3L 10658196 intron CG32066 - chr3L 10658334 intron CG32066 - chr3L_16_10655001 chr3L_10655001 RAL-359 1217 chr3L 10735812 10735827 chr3L 10735921 10735936 9 109 4.0 7.5 5.8 1.3 124 chr3L 10735812 intergenic not near genes chr3L 10735874 intergenic not near genes chr3L 10735936 intergenic not near genes chr3L_9_10735001 chr3L_10735001 RAL-359 1218 chr3L 10745520 10745567 chr3L 10745620 10745667 19 100 4.5 6.5 5.5 2.9 147 chr3L 10745520 intergenic not near genes chr3L 10745594 intergenic not near genes chr3L 10745667 intergenic not near genes chr3L_19_10745001 chr3L_10745001 RAL-359 1219 chr3L 10887362 10887373 chr3L 10887461 10887472 4 99 0.0 11.5 5.8 0.6 110 chr3L 10887362 intergenic not near genes chr3L 10887417 intergenic not near genes chr3L 10887472 intergenic not near genes chr3L_4_10885001 chr3L_10885001 RAL-359 1220 chr3L 10958227 10958237 chr3L 10958311 10958339 7 97 2.0 0.0 1.0 3.5 112 chr3L 10958227 intergenic not near genes chr3L 10958283 intergenic not near genes chr3L 10958339 intergenic not near genes chr3L_7_10955001 chr3L_10955001 RAL-359 1221 chr3L 11018543 11018578 chr3L 11018649 11018684 7 106 0.5 1.5 1.0 3.5 141 chr3L 11018543 intergenic not near genes chr3L 11018614 intergenic not near genes chr3L 11018684 intergenic not near genes chr3L_7_11015001 chr3L_11015001 RAL-359 1222 chr3L 11087051 11087089 chr3L 11088846 11088898 S-element 5 1806 1.5 1.5 1.5 2.0 1847 chr3L 11087051 intron JIL-1 - chr3L 11087974 intron JIL-1 - chr3L 11088898 intron JIL-1 - chr3L_5_11085001 chr3L_11085001 RAL-359 1223 chr3L 11105283 11105327 chr3L 11107014 11107058 X-element 5 1731 2.5 0.5 1.5 2.0 1775 chr3L 11105283 intergenic not near genes chr3L 11106170 intergenic not near genes chr3L 11107058 exon CG32073 - chr3L_5_11105001 chr3L_11105001 RAL-359 1224 chr3L 11141417 11141466 chr3L 11141518 11141581 5 112 3.0 0.0 1.5 2.0 164 chr3L 11141417 intron CG32082 + chr3L 11141499 intron CG32082 + chr3L 11141581 intron CG32082 + chr3L_5_11140001 chr3L_11140001 RAL-359 1225 chr3L 11217490 11217524 chr3L 11217593 11217626 11 103 4.0 0.0 2.0 3.7 136 chr3L 11217490 intron CG42671 + chr3L 11217558 intron CG42671 + chr3L 11217626 intron CG42671 + chr3L_11_11215001 chr3L_11215001 RAL-359 1226 chr3L 11249842 11249891 chr3L 11249945 11249994 9 102 2.5 3.0 2.8 2.4 152 chr3L 11249842 5` UTR CR44717 + chr3L 11249918 5` UTR CR44717 + chr3L 11249994 5` UTR CR44717 + chr3L_9_11245001 chr3L_11245001 RAL-359 1227 chr3L 11264457 11264473 chr3L 11271429 11271445 17.6 6 6972 6.5 4.0 5.2 1.0 6988 chr3L 11264457 intergenic not near genes chr3L 11267951 intergenic not near genes chr3L 11271445 intergenic not near genes chr3L_6_11265001 chr3L_11265001 RAL-359 1228 chr3L 11290605 11290642 chr3L 11290948 11290985 13 342 4.5 2.0 3.2 3.1 380 chr3L 11290605 intron CG6175 - chr3L 11290795 intron CG6175 - chr3L 11290985 intron CG6175 - chr3L_13_11290001 chr3L_11290001 RAL-359 1229 chr3L 11303027 11303042 chr3L 11303133 11303148 8 106 4.0 0.0 2.0 2.7 121 chr3L 11303027 intergenic not near genes chr3L 11303088 intergenic not near genes chr3L 11303148 intergenic not near genes chr3L_8_11300001 chr3L_11300001 RAL-359 1230 chr3L 11329695 11329727 chr3L 11332903 11332929 jockey 4 3210 3.0 1.5 2.2 1.2 3234 chr3L 11329695 intergenic not near genes chr3L 11331312 intergenic not near genes chr3L 11332929 intergenic not near genes chr3L_4_11330001 chr3L_11330001 RAL-359 1231 chr3L 11435541 11435581 chr3L 11435730 11435770 14 189 6.0 3.5 4.8 2.4 229 chr3L 11435541 intergenic CG6149 -,CR44548 + chr3L 11435656 5` UTR CR44548 + chr3L 11435770 5` UTR CR44548 + chr3L_14_11435001 chr3L_11435001 RAL-359 1232 chr3L 11445042 11445061 chr3L 11445139 11445158 5 97 0.0 6.0 3.0 1.2 116 chr3L 11445042 3` UTR CR44549 - chr3L 11445100 3` UTR CR44549 - chr3L 11445158 intergenic CG7557 +,CR44549 - chr3L_5_11445001 chr3L_11445001 RAL-359 1233 chr3L 11493138 11493190 chr3L 11493240 11493292 11 102 0.0 2.5 1.2 5.0 154 chr3L 11493138 intron chrb + chr3L 11493215 intron chrb + chr3L 11493292 intron chrb + chr3L_11_11490001 chr3L_11490001 RAL-359 1234 chr3L 11579545 11579571 chr3L 11579679 11579705 4 134 5.0 4.5 4.8 0.7 160 chr3L 11579545 intergenic CG43390 - chr3L 11579625 intergenic CG43390 - chr3L 11579705 intergenic CG43390 - chr3L_4_11575001 chr3L_11575001 RAL-359 1235 chr3L 11580640 11580658 chr3L 11580748 11580766 4 108 11.0 14.5 12.8 0.3 126 chr3L 11580640 intergenic CG43391 - chr3L 11580703 intergenic CG43391 - chr3L 11580766 intergenic CG43391 - chr3L_4_11580001 chr3L_11580001 RAL-359 1236 chr3L 11723069 11723109 chr3L 11727883 11727924 Doc 17 4815 5.5 6.5 6.0 2.4 4855 chr3L 11723069 3` UTR Bmcp + chr3L 11725496 intron Bmcp + chr3L 11727924 3` UTR Bmcp + chr3L_17_11725001 chr3L_11725001 RAL-359 1237 chr3L 11729656 11729698 chr3L 11729752 11729794 14 95 6.0 4.0 5.0 2.3 138 chr3L 11729656 exon CG32088 + chr3L 11729725 intron CG32088 + chr3L 11729794 exon CG32088 + chr3L_14_11725001 chr3L_11725001 RAL-359 1238 chr3L 11746654 11746679 chr3L 11746753 11746778 5 99 0.0 5.0 2.5 1.4 124 chr3L 11746654 intron CG6024 - chr3L 11746716 intron CG6024 - chr3L 11746778 intron CG6024 - chr3L_5_11745001 chr3L_11745001 RAL-359 1239 chr3L 11755165 11755193 chr3L 11755263 11755286 7 96 5.0 3.0 4.0 1.4 121 chr3L 11755165 intron CG6024 - chr3L 11755226 intron CG6024 - chr3L 11755286 intron CG6024 - chr3L_7_11755001 chr3L_11755001 RAL-359 1240 chr3L 11757908 11757932 chr3L 11758024 11758043 4 115 3.5 0.0 1.8 1.4 135 chr3L 11757908 intron CG6024 - chr3L 11757976 intron CG6024 - chr3L 11758043 intron CG6024 - chr3L_4_11755001 chr3L_11755001 RAL-359 1241 chr3L 11864532 11864582 chr3L 11865847 11865897 pogo 15 1310 7.0 6.5 6.8 1.9 1365 chr3L 11864532 intron CG44837 - chr3L 11865214 intron CG44837 - chr3L 11865897 intron CG44837 - chr3L_15_11865001 chr3L_11865001 RAL-359 1242 chr3L 11915972 11915990 chr3L 11916074 11916092 4 102 3.5 1.5 2.5 1.1 120 chr3L 11915972 intron CG44837 - chr3L 11916032 intron CG44837 - chr3L 11916092 intron CG44837 - chr3L_4_11915001 chr3L_11915001 RAL-359 1243 chr3L 11921549 11921584 chr3L 11922081 11922117 7 533 3.5 3.0 3.2 1.7 568 chr3L 11921549 intron,5` UTR CG44837 -,CG11588 + chr3L 11921833 intron,exon CG44837 -,CG11588 + chr3L 11922117 intron,exon CG44837 -,CG11588 + chr3L_7_11920001 chr3L_11920001 RAL-359 1244 chr3L 11943476 11943518 chr3L 11943597 11943639 10 121 1.5 3.5 2.5 2.9 163 chr3L 11943476 3` UTR Rpt4R + chr3L 11943558 intergenic Rpt4R +,CG5883 - chr3L 11943639 3` UTR CG5883 - chr3L_10_11940001 chr3L_11940001 RAL-359 1245 chr3L 11984560 11984596 chr3L 11984664 11984666 8 101 2.5 0.0 1.2 3.6 106 chr3L 11984560 intergenic CG6938 + chr3L 11984613 intergenic CG6938 + chr3L 11984666 intergenic CG6938 + chr3L_8_11980001 chr3L_11980001 RAL-359 1246 chr3L 12036528 12036557 chr3L 12036848 12036876 9 316 6.5 0.0 3.2 2.1 348 chr3L 12036528 intron rols - chr3L 12036702 intron rols - chr3L 12036876 intron rols - chr3L_9_12035001 chr3L_12035001 RAL-359 1247 chr3L 12052711 12052737 chr3L 12052809 12052846 10 105 3.0 9.0 6.0 1.4 135 chr3L 12052711 intron rols - chr3L 12052778 intron rols - chr3L 12052846 intron rols - chr3L_10_12050001 chr3L_12050001 RAL-359 1248 chr3L 12092382 12092421 chr3L 12092479 12092510 10 96 1.0 5.0 3.0 2.5 128 chr3L 12092382 intergenic not near genes chr3L 12092446 intergenic not near genes chr3L 12092510 intergenic not near genes chr3L_10_12090001 chr3L_12090001 RAL-359 1249 chr3L 12099294 12099331 chr3L 12099595 12099632 12 300 4.5 2.5 3.5 2.7 338 chr3L 12099294 intergenic not near genes chr3L 12099463 intergenic not near genes chr3L 12099632 intergenic not near genes chr3L_12_12095001 chr3L_12095001 RAL-359 1250 chr3L 12185314 12185358 chr3L 12185456 12185500 15 139 9.0 4.0 6.5 2.0 186 chr3L 12185314 intron CG6910 + chr3L 12185407 intron CG6910 + chr3L 12185500 intron CG6910 + chr3L_15_12185001 chr3L_12185001 RAL-359 1251 chr3L 12231373 12231423 chr3L 12231660 12231702 11 280 30.5 25.0 27.8 0.4 329 chr3L 12231373 intron app - chr3L 12231538 intron app - chr3L 12231702 intron app - chr3L_11_12230001 chr3L_12230001 RAL-359 1252 chr3L 12304096 12304117 chr3L 12304191 12304208 5 94 2.5 6.0 4.2 1.0 112 chr3L 12304096 intergenic not near genes chr3L 12304152 intergenic not near genes chr3L 12304208 intergenic not near genes chr3L_5_12300001 chr3L_12300001 RAL-359 1253 chr3L 12312491 12312506 chr3L 12312576 12312591 5 92 3.0 7.0 5.0 0.8 100 chr3L 12312491 intergenic not near genes chr3L 12312541 intergenic not near genes chr3L 12312591 intergenic not near genes chr3L_5_12310001 chr3L_12310001 RAL-359 1254 chr3L 12421379 12421423 chr3L 12421482 12421526 9 102 0.0 3.0 1.5 3.6 147 chr3L 12421379 intergenic not near genes chr3L 12421452 intergenic not near genes chr3L 12421526 intergenic not near genes chr3L_9_12420001 chr3L_12420001 RAL-359 1255 chr3L 12476272 12476317 chr3L 12476369 12476413 5 97 2.5 3.5 3.0 1.2 141 chr3L 12476272 intron CG10663 - chr3L 12476342 intron CG10663 - chr3L 12476413 intron CG10663 - chr3L_5_12475001 chr3L_12475001 RAL-359 1256 chr3L 12626137 12626166 chr3L 12626266 12626295 9 129 4.0 1.5 2.8 2.4 158 chr3L 12626137 intergenic not near genes chr3L 12626216 intergenic not near genes chr3L 12626295 intergenic not near genes chr3L_9_12625001 chr3L_12625001 RAL-359 1257 chr3L 12654366 12654384 chr3L 12654466 12654484 6 100 6.0 7.0 6.5 0.8 118 chr3L 12654366 intergenic not near genes chr3L 12654425 intergenic not near genes chr3L 12654484 intergenic not near genes chr3L_6_12650001 chr3L_12650001 RAL-359 1258 chr3L 12666905 12666953 chr3L 12667037 12667085 11 132 1.5 0.5 1.0 5.5 180 chr3L 12666905 intergenic not near genes chr3L 12666995 intergenic not near genes chr3L 12667085 intergenic not near genes chr3L_11_12665001 chr3L_12665001 RAL-359 1259 chr3L 12788403 12788433 chr3L 12788543 12788573 5 140 5.5 4.0 4.8 0.9 170 chr3L 12788403 intron Atg1 - chr3L 12788488 intron Atg1 - chr3L 12788573 exon Atg1 - chr3L_5_12785001 chr3L_12785001 RAL-359 1260 chr3L 12801996 12802008 chr3L 12802081 12802104 9 94 2.0 2.5 2.2 2.8 108 chr3L 12801996 intron Atg1 - chr3L 12802050 intron Atg1 - chr3L 12802104 intron Atg1 - chr3L_9_12800001 chr3L_12800001 RAL-359 1261 chr3L 12829050 12829094 chr3L 12829152 12829158 7 92 3.0 3.0 3.0 1.8 108 chr3L 12829050 intron CG10960 - chr3L 12829104 intron CG10960 - chr3L 12829158 intron CG10960 - chr3L_7_12825001 chr3L_12825001 RAL-359 1262 chr3L 12874904 12874956 chr3L 12877216 12877268 jockey 14 2312 4.0 3.0 3.5 3.1 2364 chr3L 12874904 intergenic not near genes chr3L 12876086 intergenic not near genes chr3L 12877268 intergenic not near genes chr3L_14_12875001 chr3L_12875001 RAL-359 1263 chr3L 12894788 12894803 chr3L 12894884 12894890 4 94 4.5 5.0 4.8 0.7 102 chr3L 12894788 intergenic CG14118 + chr3L 12894839 intergenic CG14118 + chr3L 12894890 intergenic CG14118 + chr3L_4_12890001 chr3L_12890001 RAL-359 1264 chr3L 12919260 12919309 chr3L 12924750 12924777 Rt1c 5 5482 3.0 2.0 2.5 1.4 5517 chr3L 12919260 intergenic not near genes chr3L 12922018 intergenic not near genes chr3L 12924777 intergenic not near genes chr3L_5_12920001 chr3L_12920001 RAL-359 1265 chr3L 12948020 12948046 chr3L 12948118 12948144 6 96 4.0 7.0 5.5 0.9 124 chr3L 12948020 intergenic not near genes chr3L 12948082 intergenic not near genes chr3L 12948144 intergenic not near genes chr3L_6_12945001 chr3L_12945001 RAL-359 1266 chr3L 12957772 12957813 chr3L 12962273 12962314 copia 14 4501 3.0 6.0 4.5 2.5 4542 chr3L 12957772 intergenic not near genes chr3L 12960043 intergenic not near genes chr3L 12962314 intergenic not near genes chr3L_14_12960001 chr3L_12960001 RAL-359 1267 chr3L 12979879 12979891 chr3L 12979984 12979987 5 103 6.0 3.0 4.5 0.9 108 chr3L 12979879 intergenic not near genes chr3L 12979933 intergenic not near genes chr3L 12979987 intergenic not near genes chr3L_5_12975001 chr3L_12975001 RAL-359 1268 chr3L 12979892 12979922 chr3L 12979983 12980025 9 97 1.5 3.0 2.2 2.8 133 chr3L 12979892 intergenic not near genes chr3L 12979958 intergenic not near genes chr3L 12980025 intergenic not near genes chr3L_9_12975001 chr3L_12975001 RAL-359 1269 chr3L 12986634 12986673 chr3L 12986755 12986780 8 116 2.0 4.5 3.2 1.9 146 chr3L 12986634 intergenic not near genes chr3L 12986707 intergenic not near genes chr3L 12986780 intergenic not near genes chr3L_8_12985001 chr3L_12985001 RAL-359 1270 chr3L 13015701 13015747 chr3L 13015803 13015849 13 102 1.0 0.5 0.8 7.2 148 chr3L 13015701 intergenic CG11267 +,MICAL-like - chr3L 13015775 intergenic CG11267 +,MICAL-like - chr3L 13015849 intergenic CG11267 + chr3L_13_13015001 chr3L_13015001 RAL-359 1271 chr3L 13069539 13069573 chr3L 13069638 13069672 6 99 3.0 2.5 2.8 1.6 133 chr3L 13069539 intergenic not near genes chr3L 13069606 intergenic not near genes chr3L 13069672 intergenic not near genes chr3L_6_13065001 chr3L_13065001 RAL-359 1272 chr3L 13198111 13198146 chr3L 13198205 13198241 13 100 3.0 2.0 2.5 3.7 130 chr3L 13198111 intergenic not near genes chr3L 13198176 intergenic not near genes chr3L 13198241 intergenic not near genes chr3L_13_13195001 chr3L_13195001 RAL-359 1273 chr3L 13205225 13205271 chr3L 13205331 13205377 14 106 6.5 7.0 6.8 1.8 152 chr3L 13205225 intergenic not near genes chr3L 13205301 intergenic not near genes chr3L 13205377 intergenic not near genes chr3L_14_13205001 chr3L_13205001 RAL-359 1274 chr3L 13206214 13206226 chr3L 13206316 13206328 5 101 2.0 0.0 1.0 2.5 114 chr3L 13206214 intergenic not near genes chr3L 13206271 intergenic not near genes chr3L 13206328 intergenic not near genes chr3L_5_13205001 chr3L_13205001 RAL-359 1275 chr3L 13235750 13235771 chr3L 13235829 13235875 6 97 5.0 1.5 3.2 1.4 125 chr3L 13235750 intron caps + chr3L 13235812 intron caps + chr3L 13235875 intron caps + chr3L_6_13235001 chr3L_13235001 RAL-359 1276 chr3L 13317774 13317822 chr3L 13317884 13317932 6 110 1.5 8.0 4.8 1.0 158 chr3L 13317774 intergenic not near genes chr3L 13317853 intergenic not near genes chr3L 13317932 intergenic not near genes chr3L_6_13315001 chr3L_13315001 RAL-359 1277 chr3L 13400519 13400532 chr3L 13400615 13400628 5 95 1.5 5.5 3.5 1.1 109 chr3L 13400519 intron sens - chr3L 13400574 intron sens - chr3L 13400628 intron sens - chr3L_5_13400001 chr3L_13400001 RAL-359 1278 chr3L 13525149 13525185 chr3L 13532950 13533001 roo 13 7809 7.0 5.0 6.0 1.9 7852 chr3L 13525149 intergenic not near genes chr3L 13529075 intergenic not near genes chr3L 13533001 intergenic not near genes chr3L_13_13525001 chr3L_13525001 RAL-359 1279 chr3L 13535894 13535931 chr3L 13535990 13536027 12 93 4.0 3.5 3.8 2.5 133 chr3L 13535894 intergenic not near genes chr3L 13535960 intergenic not near genes chr3L 13536027 intergenic not near genes chr3L_12_13535001 chr3L_13535001 RAL-359 1280 chr3L 13596016 13596040 chr3L 13596151 13596175 5 134 7.0 0.0 3.5 1.1 159 chr3L 13596016 intron bru-3 - chr3L 13596096 intron bru-3 - chr3L 13596175 intron bru-3 - chr3L_5_13595001 chr3L_13595001 RAL-359 1281 chr3L 13598201 13598209 chr3L 13598293 13598299 4 94 10.0 0.0 5.0 0.7 98 chr3L 13598201 intron bru-3 - chr3L 13598250 intron bru-3 - chr3L 13598299 intron bru-3 - chr3L_4_13595001 chr3L_13595001 RAL-359 1282 chr3L 13692151 13692157 chr3L 13692253 13692265 4 106 0.0 3.0 1.5 1.6 114 chr3L 13692151 intron bru-3 - chr3L 13692208 intron bru-3 - chr3L 13692265 intron bru-3 - chr3L_4_13690001 chr3L_13690001 RAL-359 1283 chr3L 13804527 13804559 chr3L 13822833 13822865 roo 7 18306 6.0 5.0 5.5 1.1 18338 chr3L 13804527 intergenic not near genes chr3L 13813696 intergenic not near genes chr3L 13822865 intergenic not near genes chr3L_7_13810001 chr3L_13810001 RAL-359 1284 chr3L 13888714 13888739 chr3L 13888882 13888904 10 167 6.5 4.0 5.2 1.6 190 chr3L 13888714 intron dysc - chr3L 13888809 intron dysc - chr3L 13888904 intron dysc - chr3L_10_13885001 chr3L_13885001 RAL-359 1285 chr3L 13940356 13940389 chr3L 13940676 13940706 7 319 8.0 3.0 5.5 1.1 350 chr3L 13940356 intron CG32137 + chr3L 13940531 intron CG32137 + chr3L 13940706 5` UTR CG32137 + chr3L_7_13940001 chr3L_13940001 RAL-359 1286 chr3L 13957876 13957904 chr3L 13958083 13958117 12 209 3.5 4.5 4.0 2.4 241 chr3L 13957876 intron CG32137 + chr3L 13957996 intron CG32137 + chr3L 13958117 intron CG32137 + chr3L_12_13955001 chr3L_13955001 RAL-359 1287 chr3L 14063032 14063085 chr3L 14063321 14063375 16 288 0.0 4.0 2.0 5.3 343 chr3L 14063032 intron CG32138 + chr3L 14063204 intron CG32138 + chr3L 14063375 intron CG32138 + chr3L_16_14060001 chr3L_14060001 RAL-359 1288 chr3L 14136811 14136849 chr3L 14136951 14136990 5 141 0.0 0.5 0.2 4.2 179 chr3L 14136811 intergenic not near genes chr3L 14136900 intergenic not near genes chr3L 14136990 intergenic not near genes chr3L_5_14135001 chr3L_14135001 RAL-359 1289 chr3L 14194708 14194737 chr3L 14194804 14194833 6 96 4.0 4.0 4.0 1.2 125 chr3L 14194708 intron nuf + chr3L 14194770 intron nuf + chr3L 14194833 intron nuf + chr3L_6_14190001 chr3L_14190001 RAL-359 1290 chr3L 14196416 14196445 chr3L 14196499 14196550 8 102 0.5 2.5 1.5 3.2 134 chr3L 14196416 intron nuf + chr3L 14196483 intron nuf + chr3L 14196550 intron nuf + chr3L_8_14195001 chr3L_14195001 RAL-359 1291 chr3L 14239986 14240001 chr3L 14240095 14240118 7 112 3.5 5.0 4.2 1.3 132 chr3L 14239986 intergenic not near genes chr3L 14240052 intergenic not near genes chr3L 14240118 intergenic not near genes chr3L_7_14240001 chr3L_14240001 RAL-359 1292 chr3L 14245573 14245592 chr3L 14245660 14245706 1360 8 107 4.5 2.0 3.2 1.9 133 chr3L 14245573 3` UTR CR44561 - chr3L 14245640 3` UTR CR44561 - chr3L 14245706 intergenic CR44561 -,CR44560 + chr3L_8_14245001 chr3L_14245001 RAL-359 1293 chr3L 14267354 14267385 chr3L 14271814 14271845 F-element 6 4459 8.5 6.0 7.2 0.7 4491 chr3L 14267354 intergenic not near genes chr3L 14269600 intergenic not near genes chr3L 14271845 intergenic not near genes chr3L_6_14265001 chr3L_14265001 RAL-359 1294 chr3L 14295982 14296010 chr3L 14296470 14296516 roo 6 496 3.5 6.5 5.0 1.0 534 chr3L 14295982 intron fz + chr3L 14296249 intron fz + chr3L 14296516 intron fz + chr3L_6_14295001 chr3L_14295001 RAL-359 1295 chr3L 14302981 14303000 chr3L 14303075 14303087 6 99 1.0 0.5 0.8 3.3 106 chr3L 14302981 intron fz + chr3L 14303034 intron fz + chr3L 14303087 intron fz + chr3L_6_14300001 chr3L_14300001 RAL-359 1296 chr3L 14341420 14341429 chr3L 14341575 14341584 4 155 0.0 2.0 1.0 2.0 164 chr3L 14341420 intron fz + chr3L 14341502 intron fz + chr3L 14341584 intron fz + chr3L_4_14340001 chr3L_14340001 RAL-359 1297 chr3L 14356429 14356483 chr3L 14356536 14356590 8 105 2.5 3.5 3.0 2.0 161 chr3L 14356429 intron fz + chr3L 14356510 intron fz + chr3L 14356590 intron fz + chr3L_8_14355001 chr3L_14355001 RAL-359 1298 chr3L 14462885 14462909 chr3L 14462993 14463016 8 108 0.0 7.5 3.8 1.7 131 chr3L 14462885 intron bbg - chr3L 14462950 intron bbg - chr3L 14463016 intron bbg - chr3L_8_14460001 chr3L_14460001 RAL-359 1299 chr3L 14468437 14468475 chr3L 14473663 14473701 copia 12 5226 3.5 4.0 3.8 2.5 5264 chr3L 14468437 intron bbg - chr3L 14471069 intron bbg - chr3L 14473701 intron bbg - chr3L_12_14470001 chr3L_14470001 RAL-359 1300 chr3L 14485997 14486027 chr3L 14486098 14486128 9 100 6.0 3.0 4.5 1.6 131 chr3L 14485997 intron bbg - chr3L 14486062 intron bbg - chr3L 14486128 intron bbg - chr3L_9_14485001 chr3L_14485001 RAL-359 1301 chr3L 14522106 14522130 chr3L 14522225 14522249 6 119 1.0 2.5 1.8 2.1 143 chr3L 14522106 intron bbg - chr3L 14522178 intron bbg - chr3L 14522249 intron bbg - chr3L_6_14520001 chr3L_14520001 RAL-359 1302 chr3L 14680413 14680454 chr3L 14680519 14680575 7 116 3.0 1.0 2.0 2.3 162 chr3L 14680413 exon ome + chr3L 14680494 exon ome + chr3L 14680575 exon ome + chr3L_7_14680001 chr3L_14680001 RAL-359 1303 chr3L 14741126 14741168 chr3L 14741224 14741261 4 97 4.5 4.5 4.5 0.7 135 chr3L 14741126 intron ome + chr3L 14741194 intron ome + chr3L 14741261 intron ome + chr3L_4_14740001 chr3L_14740001 RAL-359 1304 chr3L 14765724 14765743 chr3L 14765812 14765828 4 98 1.0 2.5 1.8 1.4 104 chr3L 14765724 3` UTR CG9384 + chr3L 14765776 3` UTR CG9384 + chr3L 14765828 3` UTR CG9384 + chr3L_4_14765001 chr3L_14765001 RAL-359 1305 chr3L 14809174 14809210 chr3L 14809275 14809311 10 100 3.0 3.5 3.2 2.4 137 chr3L 14809174 intron CG17839 + chr3L 14809242 intron CG17839 + chr3L 14809311 intron CG17839 + chr3L_10_14805001 chr3L_14805001 RAL-359 1306 chr3L 14825141 14825158 chr3L 14832888 14832905 Stalker2 6 7747 1.5 3.0 2.2 1.9 7764 chr3L 14825141 intron CG17839 + chr3L 14829023 intron CG17839 + chr3L 14832905 intron CG17839 + chr3L_6_14825001 chr3L_14825001 RAL-359 1307 chr3L 14866805 14866833 chr3L 14866916 14866944 7 110 2.5 7.0 4.8 1.2 139 chr3L 14866805 exon CG17839 + chr3L 14866874 intron CG17839 + chr3L 14866944 intron CG17839 + chr3L_7_14865001 chr3L_14865001 RAL-359 1308 chr3L 14893641 14893686 chr3L 14893746 14893791 7 105 4.0 3.5 3.8 1.5 150 chr3L 14893641 intergenic CG34245 - chr3L 14893716 intergenic CG34245 - chr3L 14893791 3` UTR CG34245 - chr3L_7_14890001 chr3L_14890001 RAL-359 1309 chr3L 14917645 14917692 chr3L 14917747 14917795 6 103 3.0 4.5 3.8 1.2 150 chr3L 14917645 intron DCX-EMAP + chr3L 14917720 intron DCX-EMAP + chr3L 14917795 intron DCX-EMAP + chr3L_6_14915001 chr3L_14915001 RAL-359 1310 chr3L 14961862 14961912 chr3L 14962232 14962282 17 370 2.0 4.5 3.2 4.0 420 chr3L 14961862 intergenic not near genes chr3L 14962072 intergenic not near genes chr3L 14962282 intergenic not near genes chr3L_17_14960001 chr3L_14960001 RAL-359 1311 chr3L 15085031 15085075 chr3L 15086217 15086258 1360 7 1185 6.0 2.5 4.2 1.3 1227 chr3L 15085031 intron cp309 - chr3L 15085644 intron cp309 - chr3L 15086258 intron cp309 - chr3L_7_15085001 chr3L_15085001 RAL-359 1312 chr3L 15201517 15201532 chr3L 15201939 15201954 6 422 1.0 2.5 1.8 2.1 437 chr3L 15201517 intergenic not near genes chr3L 15201736 intergenic not near genes chr3L 15201954 intergenic not near genes chr3L_6_15200001 chr3L_15200001 RAL-359 1313 chr3L 15209052 15209090 chr3L 15209158 15209196 5 106 3.5 2.5 3.0 1.2 144 chr3L 15209052 intergenic CG6888 + chr3L 15209124 intergenic not near genes chr3L 15209196 intergenic not near genes chr3L_5_15205001 chr3L_15205001 RAL-359 1314 chr3L 15257415 15257451 chr3L 15257648 15257679 5 232 3.0 4.0 3.5 1.1 264 chr3L 15257415 intergenic not near genes chr3L 15257547 intergenic not near genes chr3L 15257679 intergenic not near genes chr3L_5_15255001 chr3L_15255001 RAL-359 1315 chr3L 15286507 15286556 chr3L 15286663 15286697 7 154 1.5 0.0 0.8 3.9 190 chr3L 15286507 intergenic not near genes chr3L 15286602 intergenic not near genes chr3L 15286697 intergenic not near genes chr3L_7_15285001 chr3L_15285001 RAL-359 1316 chr3L 15295754 15295798 chr3L 15298617 15298661 gypsy5 13 2860 2.5 5.5 4.0 2.6 2907 chr3L 15295754 intergenic not near genes chr3L 15297208 intergenic not near genes chr3L 15298661 intergenic Best4 + chr3L_13_15295001 chr3L_15295001 RAL-359 1317 chr3L 15400790 15400839 chr3L 15400936 15400985 8 145 1.5 2.0 1.8 2.9 195 chr3L 15400790 intergenic not near genes chr3L 15400888 intergenic not near genes chr3L 15400985 intergenic not near genes chr3L_8_15400001 chr3L_15400001 RAL-359 1318 chr3L 15423746 15423779 chr3L 15426605 15426643 opus 10 2863 5.5 3.0 4.2 1.9 2897 chr3L 15423746 intergenic not near genes chr3L 15425194 intergenic not near genes chr3L 15426643 intergenic not near genes chr3L_10_15425001 chr3L_15425001 RAL-359 1319 chr3L 15450088 15450324 chr3L 15450178 15450432 12 99 10.0 3.0 6.5 1.6 344 chr3L 15450088 intergenic not near genes chr3L 15450260 intergenic not near genes chr3L 15450432 intergenic not near genes chr3L_12_15450001 chr3L_15450001 RAL-359 1320 chr3L 15466850 15466892 chr3L 15468203 15468245 7 1346 3.0 13.0 8.0 0.8 1395 chr3L 15466850 intergenic not near genes chr3L 15467548 intergenic not near genes chr3L 15468245 intergenic not near genes chr3L_7_15465001 chr3L_15465001 RAL-359 1321 chr3L 15466929 15466965 chr3L 15468315 15468351 4 1386 8.5 20.0 14.2 0.3 1422 chr3L 15466929 intergenic not near genes chr3L 15467640 intergenic not near genes chr3L 15468351 intergenic not near genes chr3L_4_15465001 chr3L_15465001 RAL-359 1322 chr3L 15501944 15501961 chr3L 15502045 15502061 4 100 6.0 6.0 6.0 0.6 117 chr3L 15501944 intron CG7272 + chr3L 15502002 intron CG7272 + chr3L 15502061 intron CG7272 + chr3L_4_15500001 chr3L_15500001 RAL-359 1323 chr3L 15501963 15501982 chr3L 15502042 15502077 8 97 3.5 6.0 4.8 1.4 114 chr3L 15501963 intron CG7272 + chr3L 15502020 intron CG7272 + chr3L 15502077 intron CG7272 + chr3L_8_15500001 chr3L_15500001 RAL-359 1324 chr3L 15541602 15541632 chr3L 15541713 15541743 5 111 5.5 2.0 3.8 1.0 141 chr3L 15541602 intron CrebA + chr3L 15541672 intron CrebA + chr3L 15541743 intron CrebA + chr3L_5_15540001 chr3L_15540001 RAL-359 1325 chr3L 15593819 15593864 chr3L 15593933 15593978 10 114 4.5 5.5 5.0 1.7 159 chr3L 15593819 intron RhoGAP71E + chr3L 15593898 intron RhoGAP71E + chr3L 15593978 intron RhoGAP71E + chr3L_10_15590001 chr3L_15590001 RAL-359 1326 chr3L 15600150 15600194 chr3L 15600255 15600300 4 113 6.5 0.0 3.2 1.0 150 chr3L 15600150 intron RhoGAP71E + chr3L 15600225 intron RhoGAP71E + chr3L 15600300 intron RhoGAP71E + chr3L_4_15600001 chr3L_15600001 RAL-359 1327 chr3L 15781636 15781672 chr3L 15781789 15781841 5 163 4.5 0.0 2.2 1.6 205 chr3L 15781636 intergenic not near genes chr3L 15781738 intergenic not near genes chr3L 15781841 intergenic not near genes chr3L_5_15780001 chr3L_15780001 RAL-359 1328 chr3L 15809153 15809191 chr3L 15809253 15809295 9 103 2.5 5.5 4.0 1.8 142 chr3L 15809153 intergenic CG6244 +,CG13445 + chr3L 15809224 intergenic CG13445 +,CG6244 + chr3L 15809295 intergenic CG13445 +,CG6244 + chr3L_9_15805001 chr3L_15805001 RAL-359 1329 chr3L 15833800 15833853 chr3L 15834019 15834072 19 219 37.0 33.5 35.2 0.5 272 chr3L 15833800 3` UTR,3` UTR CG12713 +,CG18081 - chr3L 15833936 3` UTR,3` UTR CG12713 +,CG18081 - chr3L 15834072 3` UTR CG18081 - chr3L_19_15830001 chr3L_15830001 RAL-359 1330 chr3L 15929180 15929224 chr3L 15938342 15938391 roo 10 9166 4.0 3.0 3.5 2.2 9211 chr3L 15929180 intron Pka-C3 - chr3L 15933786 intron Pka-C3 - chr3L 15938391 intron Pka-C3 - chr3L_10_15930001 chr3L_15930001 RAL-359 1331 chr3L 15946488 15946535 chr3L 15946594 15946641 4 105 5.0 0.0 2.5 1.1 153 chr3L 15946488 intron Pka-C3 - chr3L 15946564 intron Pka-C3 - chr3L 15946641 intron Pka-C3 - chr3L_4_15945001 chr3L_15945001 RAL-359 1332 chr3L 15956243 15956284 chr3L 15956347 15956388 12 102 2.5 2.0 2.2 3.8 145 chr3L 15956243 3` UTR GXIVsPLA2 + chr3L 15956316 3` UTR GXIVsPLA2 + chr3L 15956388 3` UTR GXIVsPLA2 + chr3L_12_15955001 chr3L_15955001 RAL-359 1333 chr3L 15981658 15981684 chr3L 15981764 15981765 6 102 5.5 5.5 5.5 0.9 107 chr3L 15981658 intron,3` UTR brm -,CG17027 + chr3L 15981712 intron,3` UTR brm -,CG17027 + chr3L 15981765 intron,3` UTR brm -,CG17027 + chr3L_6_15980001 chr3L_15980001 RAL-359 1334 chr3L 16015825 16015865 chr3L 16015923 16015963 5 98 3.5 3.0 3.2 1.2 138 chr3L 16015825 intergenic not near genes chr3L 16015894 intergenic not near genes chr3L 16015963 intergenic not near genes chr3L_5_16015001 chr3L_16015001 RAL-359 1335 chr3L 16024663 16024696 chr3L 16024765 16024798 21 102 3.5 5.0 4.2 4.0 135 chr3L 16024663 intron Notum + chr3L 16024730 intron Notum + chr3L 16024798 intron Notum + chr3L_21_16020001 chr3L_16020001 RAL-359 1336 chr3L 16050024 16050037 chr3L 16050122 16050135 4 98 2.5 0.0 1.2 1.8 111 chr3L 16050024 intron,5` UTR th -,CR43951 + chr3L 16050080 intron,5` UTR th -,CR43951 + chr3L 16050135 intron,5` UTR th -,CR43951 + chr3L_4_16050001 chr3L_16050001 RAL-359 1337 chr3L 16173695 16173733 chr3L 16174676 16174725 5 983 0.0 2.5 1.2 2.3 1030 chr3L 16173695 intergenic not near genes chr3L 16174210 intergenic not near genes chr3L 16174725 intergenic not near genes chr3L_5_16170001 chr3L_16170001 RAL-359 1338 chr3L 16184088 16184138 chr3L 16188927 16188952 X-element 21 4835 6.0 4.0 5.0 3.5 4864 chr3L 16184088 intergenic not near genes chr3L 16186520 intergenic not near genes chr3L 16188952 intergenic not near genes chr3L_21_16185001 chr3L_16185001 RAL-359 1339 chr3L 16198371 16198411 chr3L 16198475 16198516 8 104 3.0 2.5 2.8 2.1 145 chr3L 16198371 intron CG33687 + chr3L 16198444 exon CG33687 + chr3L 16198516 exon CG33687 + chr3L_8_16195001 chr3L_16195001 RAL-359 1340 chr3L 16212791 16212834 chr3L 16212902 16212945 7 110 5.5 2.0 3.8 1.5 154 chr3L 16212791 intergenic CG13073 - chr3L 16212868 intergenic CG13073 - chr3L 16212945 intergenic CG13073 - chr3L_7_16210001 chr3L_16210001 RAL-359 1341 chr3L 16225355 16225405 chr3L 16225451 16225501 12 96 3.5 1.5 2.5 3.4 146 chr3L 16225355 intergenic not near genes chr3L 16225428 intergenic not near genes chr3L 16225501 intergenic not near genes chr3L_12_16225001 chr3L_16225001 RAL-359 1342 chr3L 16359935 16360005 chr3L 16360225 16360278 6 281 0.0 3.5 1.8 2.1 343 chr3L 16359935 intron CG45057 - chr3L 16360106 intron CG45057 - chr3L 16360278 intron CG45057 - chr3L_6_16360001 chr3L_16360001 RAL-359 1343 chr3L 16443828 16443874 chr3L 16446188 16446234 Doc 18 2359 1.5 2.5 2.0 6.0 2406 chr3L 16443828 intron,intron CG33158 +,dsx-c73A - chr3L 16445031 intron,intron CG33158 +,dsx-c73A - chr3L 16446234 intron,intron CG33158 +,dsx-c73A - chr3L_18_16445001 chr3L_16445001 RAL-359 1344 chr3L 16450001 16450048 chr3L 16450106 16450153 8 105 0.0 2.5 1.2 3.6 152 chr3L 16450001 intron,intron CG33158 +,dsx-c73A - chr3L 16450077 intron,intron CG33158 +,dsx-c73A - chr3L 16450153 intron,exon CG33158 +,dsx-c73A - chr3L_8_16450001 chr3L_16450001 RAL-359 1345 chr3L 16493960 16494006 chr3L 16494497 16494503 jockey 17 531 6.5 5.0 5.8 2.5 543 chr3L 16493960 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494232 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494503 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_17_16490001 chr3L_16490001 RAL-359 1346 chr3L 16498509 16498548 chr3L 16498637 16498676 10 128 1.0 0.0 0.5 6.7 167 chr3L 16498509 intron,exon CG43373 -,st + chr3L 16498592 intron,intron CG43373 -,st + chr3L 16498676 intron,intron CG43373 -,st + chr3L_10_16495001 chr3L_16495001 RAL-359 1347 chr3L 16514532 16514546 chr3L 16514637 16514651 7 104 5.0 3.0 4.0 1.4 119 chr3L 16514532 intron CG43373 - chr3L 16514592 intron CG43373 - chr3L 16514651 intron CG43373 - chr3L_7_16510001 chr3L_16510001 RAL-359 1348 chr3L 16537830 16537880 chr3L 16537937 16537987 15 107 0.5 2.5 1.5 6.0 157 chr3L 16537830 intron CG43373 - chr3L 16537908 intron CG43373 - chr3L 16537987 intron CG43373 - chr3L_15_16535001 chr3L_16535001 RAL-359 1349 chr3L 16558185 16558194 chr3L 16558311 16558320 5 126 4.0 2.5 3.2 1.2 135 chr3L 16558185 intergenic CG4229 + chr3L 16558252 intergenic CG4229 + chr3L 16558320 intergenic CG4229 + chr3L_5_16555001 chr3L_16555001 RAL-359 1350 chr3L 16560292 16560335 chr3L 16560397 16560438 6 104 3.5 4.0 3.8 1.2 146 chr3L 16560292 intergenic not near genes chr3L 16560365 intergenic not near genes chr3L 16560438 intergenic not near genes chr3L_6_16560001 chr3L_16560001 RAL-359 1351 chr3L 16561089 16561130 chr3L 16561187 16561213 17 93 3.5 3.5 3.5 3.8 124 chr3L 16561089 intergenic not near genes chr3L 16561151 intergenic not near genes chr3L 16561213 intergenic not near genes chr3L_17_16560001 chr3L_16560001 RAL-359 1352 chr3L 16563214 16563238 chr3L 16563315 16563339 5 101 5.0 0.0 2.5 1.4 125 chr3L 16563214 intergenic Mipp1 - chr3L 16563276 intergenic Mipp1 - chr3L 16563339 intergenic Mipp1 - chr3L_5_16560001 chr3L_16560001 RAL-359 1353 chr3L 16610669 16610705 chr3L 16610774 16610810 6 104 3.5 1.5 2.5 1.7 141 chr3L 16610669 3` UTR Su(P) - chr3L 16610740 exon Su(P) - chr3L 16610810 exon Su(P) - chr3L_6_16610001 chr3L_16610001 RAL-359 1354 chr3L 16616508 16616541 chr3L 16621842 16621887 297 5 5342 3.0 1.5 2.2 1.6 5379 chr3L 16616508 3` UTR Abl - chr3L 16619198 3` UTR Abl - chr3L 16621887 3` UTR Abl - chr3L_5_16615001 chr3L_16615001 RAL-359 1355 chr3L 16684014 16684029 chr3L 16689255 16689270 copia 4 5240 2.5 4.0 3.2 1.0 5256 chr3L 16684014 intron,intron Lasp -,CG43954 - chr3L 16686642 intron,intron Lasp -,CG43954 - chr3L 16689270 intron,intron,5` UTR Lasp -,CG43954 -,CR45179 + chr3L_4_16685001 chr3L_16685001 RAL-359 1356 chr3L 16694331 16694368 chr3L 16694444 16694482 14 114 3.5 8.0 5.8 2.1 151 chr3L 16694331 intron,intron,intron Lasp -,CG43954 -,CR45179 + chr3L 16694406 intron,intron,intron Lasp -,CG43954 -,CR45179 + chr3L 16694482 intron,intron,intron Lasp -,CG43954 -,CR45179 + chr3L_14_16690001 chr3L_16690001 RAL-359 1357 chr3L 16714825 16714870 chr3L 16714929 16714974 10 102 6.5 3.0 4.8 1.7 149 chr3L 16714825 intron Dab + chr3L 16714900 intron Dab + chr3L 16714974 intron Dab + chr3L_10_16710001 chr3L_16710001 RAL-359 1358 chr3L 16772473 16772512 chr3L 16772583 16772622 9 110 4.5 4.0 4.2 1.7 149 chr3L 16772473 intron Nrt + chr3L 16772548 intron Nrt + chr3L 16772622 intron Nrt + chr3L_9_16770001 chr3L_16770001 RAL-359 1359 chr3L 16808019 16808040 chr3L 16808115 16808136 6 96 10.0 3.5 6.8 0.8 117 chr3L 16808019 intron nudC + chr3L 16808078 intron nudC + chr3L 16808136 intron nudC + chr3L_6_16805001 chr3L_16805001 RAL-359 1360 chr3L 16817333 16817361 chr3L 16817423 16817469 5 104 0.0 4.0 2.0 1.7 136 chr3L 16817333 intron,intron nudC +,CG13024 - chr3L 16817401 intron,intron nudC +,CG13024 - chr3L 16817469 intron,intron nudC +,CG13024 - chr3L_5_16815001 chr3L_16815001 RAL-359 1361 chr3L 16818729 16818780 chr3L 16818825 16818876 18 96 4.5 6.0 5.2 2.9 147 chr3L 16818729 intron,intron nudC +,CG13024 - chr3L 16818802 intron,intron nudC +,CG13024 - chr3L 16818876 intron,intron nudC +,CG13024 - chr3L_18_16815001 chr3L_16815001 RAL-359 1362 chr3L 16836892 16836936 chr3L 16837010 16837019 11 107 4.0 1.5 2.8 2.9 127 chr3L 16836892 intergenic not near genes chr3L 16836956 intergenic not near genes chr3L 16837019 intergenic not near genes chr3L_11_16835001 chr3L_16835001 RAL-359 1363 chr3L 16845007 16845045 chr3L 16845140 16845177 9 133 2.5 4.5 3.5 2.0 170 chr3L 16845007 intergenic CG9669 -,CG9715 +,TSG101 + chr3L 16845092 intergenic CG9669 -,CG9715 + chr3L 16845177 intergenic CG9669 -,CG9715 + chr3L_9_16845001 chr3L_16845001 RAL-359 1364 chr3L 16912909 16912955 chr3L 16913007 16913053 8 98 0.0 3.0 1.5 3.2 144 chr3L 16912909 intron Lmpt + chr3L 16912981 intron Lmpt + chr3L 16913053 intron Lmpt + chr3L_8_16910001 chr3L_16910001 RAL-359 1365 chr3L 16945710 16945752 chr3L 16954883 16954896 roo 4 9164 3.0 0.0 1.5 1.6 9186 chr3L 16945710 exon Obp73a + chr3L 16950303 intergenic not near genes chr3L 16954896 5` UTR Nc73EF + chr3L_4_16950001 chr3L_16950001 RAL-359 1366 chr3L 17027154 17027189 chr3L 17027266 17027301 13 112 1.0 3.0 2.0 4.3 147 chr3L 17027154 intergenic Fit2 +,CG7730 + chr3L 17027228 intergenic Fit2 +,CG7730 + chr3L 17027301 intergenic Fit2 +,CG7730 + chr3L_13_17025001 chr3L_17025001 RAL-359 1367 chr3L 17034922 17034964 chr3L 17035130 17035172 G2 12 208 2.5 4.5 3.5 2.7 250 chr3L 17034922 intergenic not near genes chr3L 17035047 intergenic not near genes chr3L 17035172 intergenic beg + chr3L_12_17035001 chr3L_17035001 RAL-359 1368 chr3L 17084984 17085032 chr3L 17094153 17094201 roo 12 9169 5.0 2.5 3.8 2.5 9217 chr3L 17084984 intron Rbp6 - chr3L 17089592 intron Rbp6 - chr3L 17094201 intron Rbp6 - chr3L_12_17085001 chr3L_17085001 RAL-359 1369 chr3L 17214289 17214524 chr3L 17214389 17214645 4 112 4.5 6.0 5.2 0.6 356 chr3L 17214289 intron Rbp6 - chr3L 17214467 intron Rbp6 - chr3L 17214645 intron Rbp6 - chr3L_4_17210001 chr3L_17210001 RAL-359 1370 chr3L 17367420 17367459 chr3L 17367534 17367573 8 114 5.0 4.5 4.8 1.4 153 chr3L 17367420 intergenic CR45688 +,Cad74A - chr3L 17367496 intergenic CR45688 +,Cad74A - chr3L 17367573 intergenic Cad74A -,CR45688 + chr3L_8_17365001 chr3L_17365001 RAL-359 1371 chr3L 17408896 17408915 chr3L 17408992 17409011 4 96 7.0 4.5 5.8 0.6 115 chr3L 17408896 intron blot - chr3L 17408954 intron blot - chr3L 17409011 intron blot - chr3L_4_17405001 chr3L_17405001 RAL-359 1372 chr3L 17585330 17585364 chr3L 17585636 17585671 8 308 27.0 31.0 29.0 0.3 341 chr3L 17585330 intron Eip74EF - chr3L 17585500 intron Eip74EF - chr3L 17585671 intron Eip74EF - chr3L_8_17585001 chr3L_17585001 RAL-359 1373 chr3L 17586950 17586997 chr3L 17587104 17587151 18 154 3.5 3.0 3.2 4.3 201 chr3L 17586950 intron Eip74EF - chr3L 17587050 intron Eip74EF - chr3L 17587151 intron Eip74EF - chr3L_18_17585001 chr3L_17585001 RAL-359 1374 chr3L 17644574 17644614 chr3L 17644670 17644708 9 96 1.5 4.0 2.8 2.4 134 chr3L 17644574 intron Pep - chr3L 17644641 intron Pep - chr3L 17644708 intron Pep - chr3L_9_17640001 chr3L_17640001 RAL-359 1375 chr3L 17730829 17730879 chr3L 17738179 17738229 mdg1 16 7350 6.0 2.5 4.2 3.1 7400 chr3L 17730829 intron Ccn + chr3L 17734529 intron Ccn + chr3L 17738229 intron Ccn + chr3L_16_17730001 chr3L_17730001 RAL-359 1376 chr3L 17787685 17787697 chr3L 17787795 17787795 4 108 3.5 3.5 3.5 0.9 110 chr3L 17787685 intergenic not near genes chr3L 17787740 intergenic not near genes chr3L 17787795 intergenic not near genes chr3L_4_17785001 chr3L_17785001 RAL-359 1377 chr3L 17790595 17790626 chr3L 17790868 17790911 7 283 2.5 2.5 2.5 2.0 316 chr3L 17790595 intergenic CG42815 - chr3L 17790753 intergenic CG42815 - chr3L 17790911 intergenic CG42815 - chr3L_7_17790001 chr3L_17790001 RAL-359 1378 chr3L 17799790 17799842 chr3L 17801599 17801651 S-element 19 1808 1.5 3.0 2.2 5.9 1861 chr3L 17799790 intron NUCB1 - chr3L 17800720 intron NUCB1 - chr3L 17801651 intron NUCB1 - chr3L_19_17800001 chr3L_17800001 RAL-359 1379 chr3L 17884672 17884710 chr3L 17884792 17884830 7 120 3.5 1.0 2.2 2.2 158 chr3L 17884672 intergenic CG5506 - chr3L 17884751 intergenic CG5506 - chr3L 17884830 intergenic CG5506 - chr3L_7_17880001 chr3L_17880001 RAL-359 1380 chr3L 17918366 17918400 chr3L 17921177 17921223 opus 5 2821 1.5 1.5 1.5 2.0 2857 chr3L 17918366 intergenic not near genes chr3L 17919794 intergenic not near genes chr3L 17921223 intergenic not near genes chr3L_5_17915001 chr3L_17915001 RAL-359 1381 chr3L 17957049 17957068 chr3L 17957156 17957178 5 105 2.0 2.5 2.2 1.6 129 chr3L 17957049 intron Eip75B - chr3L 17957114 intron Eip75B - chr3L 17957178 intron Eip75B - chr3L_5_17955001 chr3L_17955001 RAL-359 1382 chr3L 18006201 18006250 chr3L 18006345 18006394 11 144 2.5 2.0 2.2 3.4 193 chr3L 18006201 intron Eip75B - chr3L 18006298 intron Eip75B - chr3L 18006394 intron Eip75B - chr3L_11_18005001 chr3L_18005001 RAL-359 1383 chr3L 18047685 18047735 chr3L 18056762 18056812 roo 13 9077 3.5 1.0 2.2 4.1 9127 chr3L 18047685 intron Eip75B - chr3L 18052248 intron Eip75B - chr3L 18056812 intron Eip75B - chr3L_13_18050001 chr3L_18050001 RAL-359 1384 chr3L 18064052 18064072 chr3L 18064152 18064178 5 103 2.5 1.5 2.0 1.7 126 chr3L 18064052 intron Eip75B - chr3L 18064115 intron Eip75B - chr3L 18064178 intron Eip75B - chr3L_5_18060001 chr3L_18060001 RAL-359 1385 chr3L 18075223 18075251 chr3L 18075508 18075536 9 285 3.5 2.5 3.0 2.2 313 chr3L 18075223 intergenic not near genes chr3L 18075380 intergenic not near genes chr3L 18075536 intergenic not near genes chr3L_9_18075001 chr3L_18075001 RAL-359 1386 chr3L 18092760 18092790 chr3L 18092895 18092925 6 135 5.5 0.0 2.8 1.6 165 chr3L 18092760 intron CG13698 - chr3L 18092842 intron CG13698 - chr3L 18092925 intron CG13698 - chr3L_6_18090001 chr3L_18090001 RAL-359 1387 chr3L 18119611 18119673 chr3L 18119743 18119791 7 122 0.0 4.5 2.2 2.2 180 chr3L 18119611 intron CG7341 + chr3L 18119701 intron CG7341 + chr3L 18119791 5` UTR CG7341 + chr3L_7_18115001 chr3L_18115001 RAL-359 1388 chr3L 18172669 18172701 chr3L 18172765 18172797 12 95 10.0 6.0 8.0 1.3 128 chr3L 18172669 intron W - chr3L 18172733 intron W - chr3L 18172797 intron W - chr3L_12_18170001 chr3L_18170001 RAL-359 1389 chr3L 18180933 18180981 chr3L 18181036 18181088 7 104 1.5 0.0 0.8 3.9 155 chr3L 18180933 intron W - chr3L 18181010 intron W - chr3L 18181088 intron W - chr3L_7_18180001 chr3L_18180001 RAL-359 1390 chr3L 18198930 18198931 chr3L 24821493 24821494 7 6622563 18.5 11.5 15.0 0.4 6622564 chr3L 18198930 intergenic not near genes chr3L 21510212 intron M6 + chr3L 24821494 intergenic not near genes chr3L_7_21510001 chr3L_21510001 RAL-359 1391 chr3L 18223143 18223187 chr3L 18223246 18223302 9 106 1.5 0.0 0.8 5.0 159 chr3L 18223143 intergenic not near genes chr3L 18223222 intergenic not near genes chr3L 18223302 intergenic not near genes chr3L_9_18220001 chr3L_18220001 RAL-359 1392 chr3L 18248938 18248968 chr3L 18249056 18249086 5 118 1.0 1.5 1.2 2.3 148 chr3L 18248938 intergenic not near genes chr3L 18249012 intergenic not near genes chr3L 18249086 intergenic not near genes chr3L_5_18245001 chr3L_18245001 RAL-359 1393 chr3L 18262467 18262483 chr3L 18262573 18262589 5 106 5.0 2.5 3.8 1.0 122 chr3L 18262467 intergenic not near genes chr3L 18262528 intergenic not near genes chr3L 18262589 intergenic not near genes chr3L_5_18260001 chr3L_18260001 RAL-359 1394 chr3L 18267848 18267956 chr3L 18267945 18268053 8 96 3.0 3.0 3.0 2.0 205 chr3L 18267848 intergenic not near genes chr3L 18267950 intergenic not near genes chr3L 18268053 intergenic not near genes chr3L_8_18265001 chr3L_18265001 RAL-359 1395 chr3L 18301335 18301379 chr3L 18301444 18301488 12 109 0.5 4.0 2.2 3.8 153 chr3L 18301335 intergenic CG13700 - chr3L 18301412 intergenic CG13700 - chr3L 18301488 intergenic CG13700 - chr3L_12_18300001 chr3L_18300001 RAL-359 1396 chr3L 18359576 18359630 chr3L 18359688 18359742 18 112 3.0 5.5 4.2 3.5 166 chr3L 18359576 intergenic not near genes chr3L 18359659 intergenic not near genes chr3L 18359742 intergenic not near genes chr3L_18_18355001 chr3L_18355001 RAL-359 1397 chr3L 18406111 18406154 chr3L 18406207 18406250 5 96 3.5 3.5 3.5 1.1 139 chr3L 18406111 intergenic not near genes chr3L 18406180 intergenic not near genes chr3L 18406250 intergenic not near genes chr3L_5_18405001 chr3L_18405001 RAL-359 1398 chr3L 18408721 18408754 chr3L 18408827 18408860 5 106 3.0 2.0 2.5 1.4 139 chr3L 18408721 intergenic not near genes chr3L 18408790 intergenic not near genes chr3L 18408860 intergenic not near genes chr3L_5_18405001 chr3L_18405001 RAL-359 1399 chr3L 18437257 18437285 chr3L 18437375 18437403 10 118 2.0 4.5 3.2 2.4 146 chr3L 18437257 intergenic not near genes chr3L 18437330 intergenic not near genes chr3L 18437403 intergenic not near genes chr3L_10_18435001 chr3L_18435001 RAL-359 1400 chr3L 18448604 18448617 chr3L 18448716 18448729 4 112 4.0 2.0 3.0 1.0 125 chr3L 18448604 intergenic not near genes chr3L 18448666 intergenic not near genes chr3L 18448729 intergenic not near genes chr3L_4_18445001 chr3L_18445001 RAL-359 1401 chr3L 18456256 18456302 chr3L 18456364 18456410 7 108 1.5 4.0 2.8 1.8 154 chr3L 18456256 intergenic CR44670 - chr3L 18456333 intergenic CR44670 - chr3L 18456410 3` UTR CR44670 - chr3L_7_18455001 chr3L_18455001 RAL-359 1402 chr3L 18464488 18464513 chr3L 18464578 18464619 5 96 3.0 2.0 2.5 1.4 131 chr3L 18464488 intergenic not near genes chr3L 18464554 intergenic not near genes chr3L 18464619 intergenic not near genes chr3L_5_18460001 chr3L_18460001 RAL-359 1403 chr3L 18506118 18506158 chr3L 18509601 18509641 F-element 7 3483 6.5 3.5 5.0 1.2 3523 chr3L 18506118 intergenic not near genes chr3L 18507880 intergenic not near genes chr3L 18509641 intergenic not near genes chr3L_7_18505001 chr3L_18505001 RAL-359 1404 chr3L 18528611 18528661 chr3L 18537790 18537842 roo 16 9181 5.0 5.5 5.2 2.6 9231 chr3L 18528611 intergenic not near genes chr3L 18533226 intergenic not near genes chr3L 18537842 intergenic not near genes chr3L_16_18530001 chr3L_18530001 RAL-359 1405 chr3L 18593934 18593958 chr3L 18595934 18595958 Doc 12 2000 3.5 0.5 2.0 4.0 2024 chr3L 18593934 intergenic term - chr3L 18594946 intergenic not near genes chr3L 18595958 intergenic CR45389 + chr3L_12_18590001 chr3L_18590001 RAL-359 1406 chr3L 18606737 18606782 chr3L 18606953 18606982 5 210 5.5 4.5 5.0 0.8 245 chr3L 18606737 intron,intron,exon CG13380 -,CG4174 -,CG18233 + chr3L 18606860 intron,intron,exon CG13380 -,CG4174 -,CG18233 + chr3L 18606982 intron,intron,exon CG13380 -,CG4174 -,CG18233 + chr3L_5_18605001 chr3L_18605001 RAL-359 1407 chr3L 18607859 18607862 chr3L 18607974 18607977 4 115 6.5 2.5 4.5 0.7 118 chr3L 18607859 intron,intron,exon CG13380 -,CG4174 -,CG18231 + chr3L 18607918 intron,intron,intron CG13380 -,CG4174 -,CG18231 + chr3L 18607977 intron,intron,intron CG13380 -,CG4174 -,CG18231 + chr3L_4_18605001 chr3L_18605001 RAL-359 1408 chr3L 18638562 18638588 chr3L 18638676 18638702 8 114 5.0 2.5 3.8 1.7 140 chr3L 18638562 intron MYPT-75D + chr3L 18638632 intron MYPT-75D + chr3L 18638702 intron MYPT-75D + chr3L_8_18635001 chr3L_18635001 RAL-359 1409 chr3L 18656168 18656219 chr3L 18656272 18656300 7 101 6.0 6.5 6.2 1.0 132 chr3L 18656168 intron MYPT-75D + chr3L 18656234 intron MYPT-75D + chr3L 18656300 intron MYPT-75D + chr3L_7_18655001 chr3L_18655001 RAL-359 1410 chr3L 18677873 18677920 chr3L 18677988 18678031 9 114 4.5 9.0 6.8 1.2 158 chr3L 18677873 3` UTR GNBP1 + chr3L 18677952 intergenic GNBP1 + chr3L 18678031 intergenic GNBP1 + chr3L_9_18675001 chr3L_18675001 RAL-359 1411 chr3L 18695943 18695952 chr3L 18696077 18696092 4 138 8.0 5.5 6.8 0.5 149 chr3L 18695943 intergenic CG6893 +,Dic4 - chr3L 18696018 intergenic CG6893 +,Dic4 - chr3L 18696092 intergenic Dic4 -,CG6893 + chr3L_4_18695001 chr3L_18695001 RAL-359 1412 chr3L 18710742 18710788 chr3L 18718714 18718760 Stalker2 10 7970 1.5 2.5 2.0 3.3 8018 chr3L 18710742 intergenic not near genes chr3L 18714751 intergenic not near genes chr3L 18718760 intergenic not near genes chr3L_10_18710001 chr3L_18710001 RAL-359 1413 chr3L 18721757 18721803 chr3L 18721865 18721914 15 111 1.5 2.0 1.8 5.4 157 chr3L 18721757 intergenic CG12477 - chr3L 18721836 intergenic CG12477 - chr3L 18721914 3` UTR CG12477 - chr3L_15_18720001 chr3L_18720001 RAL-359 1414 chr3L 18725684 18725730 chr3L 18725787 18725833 6 103 6.0 3.0 4.5 1.1 149 chr3L 18725684 intergenic not near genes chr3L 18725758 intergenic not near genes chr3L 18725833 intergenic not near genes chr3L_6_18725001 chr3L_18725001 RAL-359 1415 chr3L 18772391 18772436 chr3L 18781092 18781137 roo 19 8701 7.0 2.5 4.8 3.3 8746 chr3L 18772391 intron ftz-f1 - chr3L 18776764 intron ftz-f1 - chr3L 18781137 intron ftz-f1 - chr3L_19_18775001 chr3L_18775001 RAL-359 1416 chr3L 18797295 18797326 chr3L 18797397 18797424 5 102 9.0 8.0 8.5 0.5 129 chr3L 18797295 intron ftz-f1 - chr3L 18797360 intron ftz-f1 - chr3L 18797424 intron ftz-f1 - chr3L_5_18795001 chr3L_18795001 RAL-359 1417 chr3L 18868946 18868978 chr3L 18869047 18869079 10 103 7.0 2.0 4.5 1.8 133 chr3L 18868946 3` UTR Dysb + chr3L 18869012 3` UTR Dysb + chr3L 18869079 3` UTR Dysb + chr3L_10_18865001 chr3L_18865001 RAL-359 1418 chr3L 18924466 18924480 chr3L 18924562 18924576 5 96 5.0 4.0 4.5 0.9 110 chr3L 18924466 intron CG32204 - chr3L 18924521 intron CG32204 - chr3L 18924576 intron CG32204 - chr3L_5_18920001 chr3L_18920001 RAL-359 1419 chr3L 18929960 18929986 chr3L 18930050 18930090 4 98 4.0 5.5 4.8 0.7 130 chr3L 18929960 intron CG32204 - chr3L 18930025 intron CG32204 - chr3L 18930090 exon CG32204 - chr3L_4_18930001 chr3L_18930001 RAL-359 1420 chr3L 18933082 18933124 chr3L 18933187 18933229 8 105 4.5 5.5 5.0 1.3 147 chr3L 18933082 intron CG32204 - chr3L 18933156 intron CG32204 - chr3L 18933229 intron CG32204 - chr3L_8_18930001 chr3L_18930001 RAL-359 1421 chr3L 18951000 18951051 chr3L 18951097 18951148 7 95 8.0 8.5 8.2 0.8 148 chr3L 18951000 intron CG6836 + chr3L 18951074 intron CG6836 + chr3L 18951148 intron CG6836 + chr3L_7_18950001 chr3L_18950001 RAL-359 1422 chr3L 18959977 18960028 chr3L 18960078 18960129 4 101 3.0 6.0 4.5 0.7 152 chr3L 18959977 intergenic not near genes chr3L 18960053 intergenic not near genes chr3L 18960129 intergenic not near genes chr3L_4_18960001 chr3L_18960001 RAL-359 1423 chr3L 18969534 18969577 chr3L 18969630 18969673 8 92 6.5 4.5 5.5 1.2 139 chr3L 18969534 intergenic not near genes chr3L 18969604 intergenic not near genes chr3L 18969673 intergenic not near genes chr3L_8_18965001 chr3L_18965001 RAL-359 1424 chr3L 18972400 18972412 chr3L 18972478 18972507 4 90 7.5 8.0 7.8 0.5 107 chr3L 18972400 intergenic not near genes chr3L 18972454 intergenic not near genes chr3L 18972507 intergenic not near genes chr3L_4_18970001 chr3L_18970001 RAL-359 1425 chr3L 19008818 19008865 chr3L 19009177 19009223 jockey 4 353 3.0 3.5 3.2 1.0 405 chr3L 19008818 intron nkd - chr3L 19009020 intron nkd - chr3L 19009223 intron nkd - chr3L_4_19005001 chr3L_19005001 RAL-359 1426 chr3L 19009961 19010007 chr3L 19010113 19010126 7 148 4.5 9.0 6.8 0.9 165 chr3L 19009961 intron nkd - chr3L 19010044 intron nkd - chr3L 19010126 intron nkd - chr3L_7_19010001 chr3L_19010001 RAL-359 1427 chr3L 19111386 19111407 chr3L 19111491 19111511 8 102 10.0 5.5 7.8 0.9 125 chr3L 19111386 intron CG14082 - chr3L 19111448 intron CG14082 - chr3L 19111511 intron CG14082 - chr3L_8_19110001 chr3L_19110001 RAL-359 1428 chr3L 19115622 19115671 chr3L 19115814 19115863 BS 7 190 3.0 2.0 2.5 2.0 241 chr3L 19115622 intron CG14082 - chr3L 19115742 intron CG14082 - chr3L 19115863 intron CG14082 - chr3L_7_19115001 chr3L_19115001 RAL-359 1429 chr3L 19117022 19117076 chr3L 19124489 19124505 mdg1 15 7460 5.5 3.0 4.2 2.9 7483 chr3L 19117022 intron CG14082 - chr3L 19120764 intron CG14082 - chr3L 19124505 intron CG14082 - chr3L_15_19120001 chr3L_19120001 RAL-359 1430 chr3L 19135075 19135119 chr3L 19135245 19135285 5 167 5.5 8.0 6.8 0.6 210 chr3L 19135075 intron CG14082 - chr3L 19135180 intron CG14082 - chr3L 19135285 intron CG14082 - chr3L_5_19135001 chr3L_19135001 RAL-359 1431 chr3L 19182373 19182412 chr3L 19182474 19182512 12 101 4.5 3.5 4.0 2.4 139 chr3L 19182373 intron fz2 - chr3L 19182442 intron fz2 - chr3L 19182512 intron fz2 - chr3L_12_19180001 chr3L_19180001 RAL-359 1432 chr3L 19208042 19208076 chr3L 19209436 19209470 Doc 6 1390 6.5 2.0 4.2 1.2 1428 chr3L 19208042 intron fz2 - chr3L 19208756 intron fz2 - chr3L 19209470 intron fz2 - chr3L_6_19205001 chr3L_19205001 RAL-359 1433 chr3L 19285879 19285904 chr3L 19285975 19286000 5 96 5.5 5.5 5.5 0.8 121 chr3L 19285879 intron Gbs-76A - chr3L 19285940 intron Gbs-76A - chr3L 19286000 intron Gbs-76A - chr3L_5_19285001 chr3L_19285001 RAL-359 1434 chr3L 19342740 19342765 chr3L 19342851 19342876 5 111 3.5 4.0 3.8 1.0 136 chr3L 19342740 3` UTR CG32206 - chr3L 19342808 3` UTR CG32206 - chr3L 19342876 3` UTR CG32206 - chr3L_5_19340001 chr3L_19340001 RAL-359 1435 chr3L 19346870 19346881 chr3L 19346968 19346969 4 96 0.0 6.5 3.2 1.0 99 chr3L 19346870 intron CG32206 - chr3L 19346920 intron CG32206 - chr3L 19346969 intron CG32206 - chr3L_4_19345001 chr3L_19345001 RAL-359 1436 chr3L 19417783 19417801 chr3L 19417877 19417901 6 95 9.0 2.0 5.5 0.9 118 chr3L 19417783 intergenic not near genes chr3L 19417842 intergenic not near genes chr3L 19417901 intergenic not near genes chr3L_6_19415001 chr3L_19415001 RAL-359 1437 chr3L 19426751 19426775 chr3L 19426849 19426864 5 95 8.5 9.5 9.0 0.5 113 chr3L 19426751 intergenic not near genes chr3L 19426808 intergenic not near genes chr3L 19426864 intergenic not near genes chr3L_5_19425001 chr3L_19425001 RAL-359 1438 chr3L 19527907 19527949 chr3L 19528006 19528048 10 98 7.0 7.0 7.0 1.2 141 chr3L 19527907 intergenic not near genes chr3L 19527978 intergenic not near genes chr3L 19528048 intergenic not near genes chr3L_10_19525001 chr3L_19525001 RAL-359 1439 chr3L 19554796 19554848 chr3L 19554911 19554962 11 113 9.5 8.0 8.8 1.1 166 chr3L 19554796 intergenic CG9300 + chr3L 19554879 intergenic CG9300 + chr3L 19554962 intergenic CG9300 + chr3L_11_19550001 chr3L_19550001 RAL-359 1440 chr3L 19564955 19564987 chr3L 19565069 19565101 6 113 3.5 7.5 5.5 0.9 146 chr3L 19564955 intergenic mir-9a + chr3L 19565028 intergenic mir-9a + chr3L 19565101 intergenic mir-9a + chr3L_6_19565001 chr3L_19565001 RAL-359 1441 chr3L 19576358 19576395 chr3L 19576455 19576492 11 96 2.0 1.0 1.5 4.4 134 chr3L 19576358 intron Shal - chr3L 19576425 intron Shal - chr3L 19576492 intron Shal - chr3L_11_19575001 chr3L_19575001 RAL-359 1442 chr3L 19820280 19820319 chr3L 19827849 19827888 412 14 7567 4.5 3.5 4.0 2.8 7608 chr3L 19820280 intron Deaf1 + chr3L 19824084 intron Deaf1 + chr3L 19827888 intron Deaf1 + chr3L_14_19820001 chr3L_19820001 RAL-359 1443 chr3L 19848487 19848528 chr3L 19857697 19857724 roo 11 9208 5.0 5.5 5.2 1.8 9237 chr3L 19848487 intron Papss + chr3L 19853106 intron Papss + chr3L 19857724 intron Papss + chr3L_11_19850001 chr3L_19850001 RAL-359 1444 chr3L 19861815 19861825 chr3L 19863623 19863633 S-element 5 1808 3.5 1.0 2.2 1.6 1818 chr3L 19861815 5` UTR CR45433 + chr3L 19862724 intergenic not near genes chr3L 19863633 intergenic not near genes chr3L_5_19860001 chr3L_19860001 RAL-359 1445 chr3L 19981203 19981234 chr3L 19981303 19981334 11 100 5.0 7.0 6.0 1.6 131 chr3L 19981203 intergenic CG17732 + chr3L 19981268 intergenic CG17732 + chr3L 19981334 intergenic CG17732 + chr3L_11_19980001 chr3L_19980001 RAL-359 1446 chr3L 20086782 20086806 chr3L 20086880 20086904 6 98 8.5 3.5 6.0 0.9 122 chr3L 20086782 intron sNPF-R - chr3L 20086843 intron sNPF-R - chr3L 20086904 intron sNPF-R - chr3L_6_20085001 chr3L_20085001 RAL-359 1447 chr3L 20113461 20113507 chr3L 20113576 20113621 9 114 11.5 9.0 10.2 0.8 160 chr3L 20113461 intergenic not near genes chr3L 20113541 intergenic not near genes chr3L 20113621 intergenic not near genes chr3L_9_20110001 chr3L_20110001 RAL-359 1448 chr3L 20113641 20113680 chr3L 20122918 20122957 roo 4 9277 4.5 2.0 3.2 1.0 9316 chr3L 20113641 intergenic not near genes chr3L 20118299 intergenic not near genes chr3L 20122957 intergenic not near genes chr3L_4_20115001 chr3L_20115001 RAL-359 1449 chr3L 20143097 20143104 chr3L 20143197 20143204 4 100 10.0 13.5 11.8 0.3 107 chr3L 20143097 intergenic not near genes chr3L 20143150 intergenic not near genes chr3L 20143204 intergenic not near genes chr3L_4_20140001 chr3L_20140001 RAL-359 1450 chr3L 20148264 20148296 chr3L 20148374 20148406 7 109 6.5 3.5 5.0 1.2 142 chr3L 20148264 intergenic not near genes chr3L 20148335 intergenic not near genes chr3L 20148406 intergenic not near genes chr3L_7_20145001 chr3L_20145001 RAL-359 1451 chr3L 20158878 20158901 chr3L 20159040 20159063 6 162 9.5 7.5 8.5 0.6 185 chr3L 20158878 intron CG42674 - chr3L 20158970 intron CG42674 - chr3L 20159063 intron CG42674 - chr3L_6_20155001 chr3L_20155001 RAL-359 1452 chr3L 20218210 20218228 chr3L 20218346 20218364 5 136 0.0 7.0 3.5 1.1 154 chr3L 20218210 intergenic CG6933 - chr3L 20218287 intergenic CG6933 - chr3L 20218364 intergenic CG6933 - chr3L_5_20215001 chr3L_20215001 RAL-359 1453 chr3L 20233412 20233466 chr3L 20233529 20233589 4 118 7.0 3.0 5.0 0.7 177 chr3L 20233412 3` UTR CG17233 - chr3L 20233500 3` UTR CG17233 - chr3L 20233589 3` UTR CG17233 - chr3L_4_20230001 chr3L_20230001 RAL-359 1454 chr3L 20257312 20257363 chr3L 20258452 20258498 pogo 11 1139 2.0 4.5 3.2 2.6 1186 chr3L 20257312 intron rdgC + chr3L 20257905 intron rdgC + chr3L 20258498 intron rdgC + chr3L_11_20255001 chr3L_20255001 RAL-359 1455 chr3L 20283674 20283706 chr3L 20283778 20283810 6 101 7.0 8.5 7.8 0.7 136 chr3L 20283674 intron gogo - chr3L 20283742 intron gogo - chr3L 20283810 intron gogo - chr3L_6_20280001 chr3L_20280001 RAL-359 1456 chr3L 20345587 20345634 chr3L 20345688 20345735 9 99 8.5 9.5 9.0 0.9 148 chr3L 20345587 intergenic Rbbp5 - chr3L 20345661 intergenic Rbbp5 - chr3L 20345735 3` UTR Rbbp5 - chr3L_9_20345001 chr3L_20345001 RAL-359 1457 chr3L 20386926 20386970 chr3L 20387048 20387087 11 122 3.0 3.0 3.0 2.8 161 chr3L 20386926 intron fbl + chr3L 20387006 intron fbl + chr3L 20387087 intron fbl + chr3L_11_20385001 chr3L_20385001 RAL-359 1458 chr3L 20444109 20444142 chr3L 20444216 20444249 6 106 6.0 8.5 7.2 0.7 140 chr3L 20444109 intron CG5910 + chr3L 20444179 intron CG5910 + chr3L 20444249 intron CG5910 + chr3L_6_20440001 chr3L_20440001 RAL-359 1459 chr3L 20462569 20462603 chr3L 20462670 20462704 9 101 5.0 7.5 6.2 1.2 135 chr3L 20462569 intron atk - chr3L 20462636 intron atk - chr3L 20462704 intron atk - chr3L_9_20460001 chr3L_20460001 RAL-359 1460 chr3L 20476737 20476777 chr3L 20484356 20484396 springer 12 7618 5.0 3.5 4.2 2.3 7659 chr3L 20476737 3` UTR isoQC + chr3L 20480566 intergenic not near genes chr3L 20484396 3` UTR ZnT77C - chr3L_12_20480001 chr3L_20480001 RAL-359 1461 chr3L 20590076 20590091 chr3L 20590602 20590624 412 5 531 2.5 2.0 2.2 1.6 548 chr3L 20590076 intergenic not near genes chr3L 20590350 intergenic not near genes chr3L 20590624 intergenic not near genes chr3L_5_20590001 chr3L_20590001 RAL-359 1462 chr3L 20603409 20603456 chr3L 20603520 20603567 4 111 5.0 7.5 6.2 0.6 158 chr3L 20603409 intron knrl - chr3L 20603488 intron knrl - chr3L 20603567 intron knrl - chr3L_4_20600001 chr3L_20600001 RAL-359 1463 chr3L 20607277 20607323 chr3L 20607376 20607422 5 99 20.5 20.0 20.2 0.2 145 chr3L 20607277 intron knrl - chr3L 20607350 intron knrl - chr3L 20607422 intron knrl - chr3L_5_20605001 chr3L_20605001 RAL-359 1464 chr3L 20668438 20668468 chr3L 20668530 20668553 4 92 7.0 3.5 5.2 0.6 115 chr3L 20668438 intergenic not near genes chr3L 20668496 intergenic not near genes chr3L 20668553 intergenic not near genes chr3L_4_20665001 chr3L_20665001 RAL-359 1465 chr3L 20710739 20710793 chr3L 20710836 20710890 6 97 3.5 2.0 2.8 1.6 151 chr3L 20710739 intergenic not near genes chr3L 20710814 intergenic not near genes chr3L 20710890 intergenic not near genes chr3L_6_20710001 chr3L_20710001 RAL-359 1466 chr3L 20733787 20733836 chr3L 20733893 20733936 10 104 2.5 5.5 4.0 2.0 149 chr3L 20733787 intron CG13252 + chr3L 20733862 intron CG13252 + chr3L 20733936 intron CG13252 + chr3L_10_20730001 chr3L_20730001 RAL-359 1467 chr3L 20739474 20739506 chr3L 20739609 20739641 5 134 3.0 2.5 2.8 1.3 167 chr3L 20739474 intron CG13252 + chr3L 20739558 intron CG13252 + chr3L 20739641 intron CG13252 + chr3L_5_20735001 chr3L_20735001 RAL-359 1468 chr3L 20821275 20821310 chr3L 20824764 20824935 NOF 6 3605 4.0 1.5 2.8 1.6 3660 chr3L 20821275 intron Pka-R1 + chr3L 20823105 intron Pka-R1 + chr3L 20824935 intron Pka-R1 + chr3L_6_20820001 chr3L_20820001 RAL-359 1469 chr3L 20849255 20849298 chr3L 20849354 20849397 9 99 3.5 2.5 3.0 2.2 142 chr3L 20849255 intron CG32432 - chr3L 20849326 intron CG32432 - chr3L 20849397 intron CG32432 - chr3L_9_20845001 chr3L_20845001 RAL-359 1470 chr3L 20863593 20863621 chr3L 20863804 20863832 8 211 7.5 5.5 6.5 1.1 239 chr3L 20863593 intron CG32432 - chr3L 20863712 intron CG32432 - chr3L 20863832 intron CG32432 - chr3L_8_20860001 chr3L_20860001 RAL-359 1471 chr3L 20864626 20864675 chr3L 20864727 20864773 8 99 6.5 6.5 6.5 1.1 147 chr3L 20864626 intron CG32432 - chr3L 20864700 intron CG32432 - chr3L 20864773 intron CG32432 - chr3L_8_20860001 chr3L_20860001 RAL-359 1472 chr3L 20964597 20964640 chr3L 20964694 20964737 12 89 5.5 3.0 4.2 2.3 140 chr3L 20964597 3` UTR CG12983 - chr3L 20964667 3` UTR CG12983 - chr3L 20964737 3` UTR CG12983 - chr3L_12_20960001 chr3L_20960001 RAL-359 1473 chr3L 20977408 20977438 chr3L 20977545 20977575 6 140 5.5 7.5 6.5 0.8 167 chr3L 20977408 intergenic not near genes chr3L 20977492 intergenic not near genes chr3L 20977575 intergenic not near genes chr3L_6_20975001 chr3L_20975001 RAL-359 1474 chr3L 21071297 21071336 chr3L 21071480 21071519 10 182 5.5 11.0 8.2 1.1 222 chr3L 21071297 intron siz + chr3L 21071408 intron siz + chr3L 21071519 intron siz + chr3L_10_21070001 chr3L_21070001 RAL-359 1475 chr3L 21082197 21082240 chr3L 21082295 21082324 5 95 3.5 5.5 4.5 0.9 127 chr3L 21082197 intron ko - chr3L 21082260 intron ko - chr3L 21082324 intron ko - chr3L_5_21080001 chr3L_21080001 RAL-359 1476 chr3L 21151850 21151895 chr3L 21156954 21156999 flea 14 5104 2.5 4.0 3.2 3.3 5149 chr3L 21151850 intron Ac78C - chr3L 21154424 intron Ac78C - chr3L 21156999 intron Ac78C - chr3L_14_21150001 chr3L_21150001 RAL-359 1477 chr3L 21306128 21306179 chr3L 21315307 21315358 roo 12 9178 2.0 2.5 2.2 3.8 9230 chr3L 21306128 3` UTR CG7632 + chr3L 21310743 intron Pc - chr3L 21315358 3` UTR Pc - chr3L_12_21310001 chr3L_21310001 RAL-359 1478 chr3L 21348317 21348364 chr3L 21348500 21348547 16 182 8.5 4.0 6.2 2.2 230 chr3L 21348317 intron,intron CG32436 +,ebd2 - chr3L 21348432 intron,intron CG32436 +,ebd2 - chr3L 21348547 intron,intron CG32436 +,ebd2 - chr3L_16_21345001 chr3L_21345001 RAL-359 1479 chr3L 21372705 21372749 chr3L 21379233 21379277 McClintock 9 6528 3.0 3.5 3.2 2.1 6572 chr3L 21372705 intergenic not near genes chr3L 21375991 intergenic not near genes chr3L 21379277 intergenic not near genes chr3L_9_21375001 chr3L_21375001 RAL-359 1480 chr3L 21406977 21407015 chr3L 21407076 21407086 4 92 5.0 4.0 4.5 0.7 109 chr3L 21406977 intron rgn + chr3L 21407032 intron rgn + chr3L 21407086 intron rgn + chr3L_4_21405001 chr3L_21405001 RAL-359 1481 chr3L 93852 93853 chr3L 21448026 21448026 4 21354173 2.5 10.5 6.5 0.5 21354174 chr3L 93852 intergenic not near genes chr3L 10770939 intergenic not near genes chr3L 21448026 3` UTR Syx7 + chr3L_4_10770001 chr3L_10770001 RAL-359 1482 chr3L 4341331 4341335 chr3L 21448026 21448026 14 17106693 10.5 10.5 10.5 1.2 17106695 chr3L 4341331 intron Cip4 - chr3L 12894678 3` UTR CG14118 + chr3L 21448026 3` UTR Syx7 + chr3L_14_12890001 chr3L_12890001 RAL-359 1483 chr3L 7201270 7201270 chr3L 21448026 21448026 8 14246756 12.0 10.5 11.2 0.7 14246756 chr3L 7201270 intergenic not near genes chr3L 14324648 intron,intron fz +,CR45025 - chr3L 21448026 3` UTR Syx7 + chr3L_8_14320001 chr3L_14320001 RAL-359 1484 chr3L 4341332 4341333 chr3L 21448027 21448027 17 17106695 10.5 10.5 10.5 1.5 17106695 chr3L 4341332 intron Cip4 - chr3L 12894680 3` UTR CG14118 + chr3L 21448027 3` UTR Syx7 + chr3L_17_12890001 chr3L_12890001 RAL-359 1485 chr3L 21467392 21467436 chr3L 21467501 21467545 14 112 33.0 28.0 30.5 0.4 153 chr3L 21467392 intergenic not near genes chr3L 21467468 intergenic not near genes chr3L 21467545 intergenic not near genes chr3L_14_21465001 chr3L_21465001 RAL-359 1486 chr3L 21498827 21498851 chr3L 21500483 21500505 1360 4 1652 8.0 4.0 6.0 0.6 1678 chr3L 21498827 5` UTR,intron CR43933 +,Glg1 - chr3L 21499666 intron Glg1 - chr3L 21500505 intron Glg1 - chr3L_4_21495001 chr3L_21495001 RAL-359 1487 chr3L 21559077 21559122 chr3L 21559478 21559516 12 400 6.0 9.5 7.8 1.4 439 chr3L 21559077 3` UTR CapaR - chr3L 21559296 3` UTR CapaR - chr3L 21559516 intron CapaR - chr3L_12_21555001 chr3L_21555001 RAL-359 1488 chr3L 21639181 21639226 chr3L 21639280 21639325 9 94 4.0 5.0 4.5 1.6 144 chr3L 21639181 intergenic CG32444 +,CG32445 + chr3L 21639253 intergenic CG32445 +,CG32444 + chr3L 21639325 intergenic CG32445 +,CG32444 + chr3L_9_21635001 chr3L_21635001 RAL-359 1489 chr3L 21657009 21657021 chr3L 21657094 21657133 4 97 5.5 7.5 6.5 0.5 124 chr3L 21657009 intron CG43980 + chr3L 21657071 intron CG43980 + chr3L 21657133 intron CG43980 + chr3L_4_21655001 chr3L_21655001 RAL-359 1490 chr3L 21769037 21769087 chr3L 21769144 21769185 10 106 5.5 5.0 5.2 1.6 148 chr3L 21769037 intron,intron Syn1 -,CG42689 + chr3L 21769111 intron,intron Syn1 -,CG42689 + chr3L 21769185 intron,intron Syn1 -,CG42689 + chr3L_10_21765001 chr3L_21765001 RAL-359 1491 chr3L 21883798 21883840 chr3L 21883898 21883940 4 100 3.5 9.0 6.2 0.6 142 chr3L 21883798 intron mub + chr3L 21883869 intron mub + chr3L 21883940 intron mub + chr3L_4_21880001 chr3L_21880001 RAL-359 1492 chr3L 21886374 21886420 chr3L 21886477 21886523 8 102 4.5 6.5 5.5 1.2 149 chr3L 21886374 intron,intron mub +,CR43878 - chr3L 21886448 intron,intron mub +,CR43878 - chr3L 21886523 intron,intron mub +,CR43878 - chr3L_8_21885001 chr3L_21885001 RAL-359 1493 chr3L 21905313 21905353 chr3L 21905413 21905436 6 95 12.0 13.0 12.5 0.4 123 chr3L 21905313 intron mub + chr3L 21905374 intron mub + chr3L 21905436 intron mub + chr3L_6_21905001 chr3L_21905001 RAL-359 1494 chr3L 21950312 21950355 chr3L 21950409 21950452 15 95 9.0 10.5 9.8 1.4 140 chr3L 21950312 exon CG7448 + chr3L 21950382 exon CG7448 + chr3L 21950452 intron CG7448 + chr3L_15_21950001 chr3L_21950001 RAL-359 1495 chr3L 21975662 21975712 chr3L 21975916 21975966 6 252 5.0 2.0 3.5 1.3 304 chr3L 21975662 intron CG7470 + chr3L 21975814 intron CG7470 + chr3L 21975966 intron CG7470 + chr3L_6_21975001 chr3L_21975001 RAL-359 1496 chr3L 21994434 21994455 chr3L 21994535 21994556 4 101 5.5 6.5 6.0 0.6 122 chr3L 21994434 intergenic not near genes chr3L 21994495 intergenic not near genes chr3L 21994556 intergenic not near genes chr3L_4_21990001 chr3L_21990001 RAL-359 1497 chr3L 22008835 22008875 chr3L 22008932 22008972 6 92 4.0 3.5 3.8 1.2 137 chr3L 22008835 intergenic not near genes chr3L 22008904 intergenic not near genes chr3L 22008972 intergenic not near genes chr3L_6_22005001 chr3L_22005001 RAL-359 1498 chr3L 22099653 22099700 chr3L 22105859 22105906 3S18 20 6204 7.0 3.5 5.2 3.2 6253 chr3L 22099653 intergenic not near genes chr3L 22102780 intergenic not near genes chr3L 22105906 intergenic not near genes chr3L_20_22100001 chr3L_22100001 RAL-359 1499 chr3L 22130483 22130522 chr3L 22130649 22130688 8 166 3.0 3.0 3.0 2.0 205 chr3L 22130483 intergenic not near genes chr3L 22130586 intergenic not near genes chr3L 22130688 intergenic not near genes chr3L_8_22130001 chr3L_22130001 RAL-359 1500 chr3L 22169453 22169466 chr3L 22169566 22169579 5 113 11.0 11.0 11.0 0.4 126 chr3L 22169453 intron olf413 + chr3L 22169516 intron olf413 + chr3L 22169579 intron olf413 + chr3L_5_22165001 chr3L_22165001 RAL-359 1501 chr3L 22207344 22207361 chr3L 22207455 22207472 4 110 15.0 12.0 13.5 0.3 128 chr3L 22207344 intron olf413 + chr3L 22207408 intron olf413 + chr3L 22207472 intron olf413 + chr3L_4_22205001 chr3L_22205001 RAL-359 1502 chr3L 22271117 22271161 chr3L 22271264 22271307 7 147 5.0 7.0 6.0 1.0 190 chr3L 22271117 intron Csp + chr3L 22271212 intron Csp + chr3L 22271307 intron Csp + chr3L_7_22270001 chr3L_22270001 RAL-359 1503 chr3L 22275626 22275675 chr3L 22275835 22275890 16 211 7.0 8.5 7.8 1.8 264 chr3L 22275626 intron srpk79D + chr3L 22275758 intron srpk79D + chr3L 22275890 intron srpk79D + chr3L_16_22275001 chr3L_22275001 RAL-359 1504 chr3L 22276527 22276569 chr3L 22276689 22276731 4 156 3.0 4.0 3.5 0.9 204 chr3L 22276527 intron srpk79D + chr3L 22276629 intron srpk79D + chr3L 22276731 intron srpk79D + chr3L_4_22275001 chr3L_22275001 RAL-359 1505 chr3L 22340019 22340065 chr3L 22340127 22340159 5 106 6.5 6.0 6.2 0.7 140 chr3L 22340019 intron Ten-m - chr3L 22340089 intron Ten-m - chr3L 22340159 intron Ten-m - chr3L_5_22340001 chr3L_22340001 RAL-359 1506 chr3L 22447189 22447226 chr3L 22447295 22447337 18 110 3.0 5.5 4.2 3.5 148 chr3L 22447189 intergenic not near genes chr3L 22447263 intergenic not near genes chr3L 22447337 intergenic not near genes chr3L_18_22445001 chr3L_22445001 RAL-359 1507 chr3L 22477033 22477078 chr3L 22477144 22477186 4 106 0.0 3.0 1.5 1.6 153 chr3L 22477033 intergenic not near genes chr3L 22477110 intergenic not near genes chr3L 22477186 intergenic not near genes chr3L_4_22475001 chr3L_22475001 RAL-359 1508 chr3L 22513000 22513027 chr3L 22513107 22513134 4 106 6.0 7.0 6.5 0.5 134 chr3L 22513000 intergenic not near genes chr3L 22513067 intergenic not near genes chr3L 22513134 intergenic not near genes chr3L_4_22510001 chr3L_22510001 RAL-359 1509 chr3L 22514757 22514776 chr3L 22514944 22514953 5 185 8.5 4.0 6.2 0.7 196 chr3L 22514757 intergenic not near genes chr3L 22514855 intergenic not near genes chr3L 22514953 intergenic not near genes chr3L_5_22510001 chr3L_22510001 RAL-359 1510 chr3L 22555748 22555798 chr3L 22563238 22563276 blood 6 7482 3.5 3.0 3.2 1.4 7528 chr3L 22555748 intergenic not near genes chr3L 22559512 intergenic not near genes chr3L 22563276 intergenic not near genes chr3L_6_22555001 chr3L_22555001 RAL-359 1511 chr3L 22577636 22577645 chr3L 22582406 22582453 Doc 4 4798 1.0 3.5 2.2 1.2 4817 chr3L 22577636 intergenic not near genes chr3L 22580044 intergenic not near genes chr3L 22582453 3` UTR CG14459 - chr3L_4_22580001 chr3L_22580001 RAL-359 1512 chr3L 22617180 22617218 chr3L 22624640 22624690 blood 9 7467 5.0 3.5 4.2 1.7 7510 chr3L 22617180 intron CG14459 - chr3L 22620935 intron CG14459 - chr3L 22624690 intron CG14459 - chr3L_9_22620001 chr3L_22620001 RAL-359 1513 chr3L 22626873 22626893 chr3L 22626980 22627003 5 109 18.0 20.0 19.0 0.2 130 chr3L 22626873 intron CG14459 - chr3L 22626938 intron CG14459 - chr3L 22627003 intron CG14459 - chr3L_5_22625001 chr3L_22625001 RAL-359 1514 chr3L 22761368 22761412 chr3L 22766822 22766866 Ivk 11 5453 6.0 6.5 6.2 1.5 5498 chr3L 22761368 intron SPoCk + chr3L 22764117 intron SPoCk + chr3L 22766866 intron SPoCk + chr3L_11_22760001 chr3L_22760001 RAL-359 1515 chr3L 22786070 22786110 chr3L 22788487 22788527 6 2417 26.5 21.5 24.0 0.2 2457 chr3L 22786070 3` UTR SPoCk + chr3L 22787298 3` UTR SPoCk + chr3L 22788527 exon CG14448 + chr3L_6_22785001 chr3L_22785001 RAL-359 1516 chr3L 22853450 22853722 chr3L 22853557 22853827 16 106 3.0 7.0 5.0 2.7 377 chr3L 22853450 5` UTR,5` UTR CR43426 +,CG32462 - chr3L 22853638 5` UTR CR43426 + chr3L 22853827 5` UTR CR43426 + chr3L_16_22850001 chr3L_22850001 RAL-359 1517 chr3L 22865964 22866005 chr3L 22867117 22867158 Doc 10 1152 6.0 5.5 5.8 1.5 1194 chr3L 22865964 intron CG33170 + chr3L 22866561 intron CG33170 + chr3L 22867158 intron CG33170 + chr3L_10_22865001 chr3L_22865001 RAL-359 1518 chr3L 22908066 22908066 chr3L 24821492 24821494 8 1913427 25.0 11.0 18.0 0.4 1913428 chr3L 22908066 intergenic not near genes chr3L 23864780 intron CG40470 - chr3L 24821494 intergenic not near genes chr3L_8_23860001 chr3L_23860001 RAL-359 1519 chr3L 22989847 22989889 chr3L 22996841 22996883 297 15 6992 3.5 4.5 4.0 3.0 7036 chr3L 22989847 intergenic not near genes chr3L 22993365 intergenic not near genes chr3L 22996883 intergenic not near genes chr3L_15_22990001 chr3L_22990001 RAL-359 1520 chr3L 23182247 23182293 chr3L 23182377 23182399 9 126 4.5 4.0 4.2 1.7 152 chr3L 23182247 intron CG34031 + chr3L 23182323 intron CG34031 + chr3L 23182399 intron CG34031 + chr3L_9_23180001 chr3L_23180001 RAL-359 1521 chr3L 23205429 23205452 chr3L 23205679 23205702 5 247 9.5 5.0 7.2 0.6 273 chr3L 23205429 intergenic not near genes chr3L 23205566 intergenic not near genes chr3L 23205702 intergenic not near genes chr3L_5_23205001 chr3L_23205001 RAL-359 1522 chr3L 23875520 23875552 chr3L 23875606 23875649 8 91 3.0 1.5 2.2 2.5 129 chr3L 23875520 intron CG40470 - chr3L 23875584 intron CG40470 - chr3L 23875649 intron CG40470 - chr3L_8_23875001 chr3L_23875001 RAL-359 1523 chr3L 24012387 24012430 chr3L 24020748 24020791 roo 9 8360 3.5 3.5 3.5 2.0 8404 chr3L 24012387 intergenic not near genes chr3L 24016589 intergenic not near genes chr3L 24020791 intergenic not near genes chr3L_9_24015001 chr3L_24015001 RAL-359 1524 chr3L 24791876 24791916 chr3L 24796675 24796715 Doc 5 4799 3.0 1.5 2.2 1.6 4839 chr3L 24791876 intergenic not near genes chr3L 24794296 intergenic not near genes chr3L 24796715 intergenic not near genes chr3L_5_24790001 chr3L_24790001 RAL-359 1525 chr3L 18198931 18198935 chr3L 24821493 24821493 7 6622561 17.5 11.5 14.5 0.5 6622562 chr3L 18198931 intergenic not near genes chr3L 21510212 intron M6 + chr3L 24821493 intergenic not near genes chr3L_7_21510001 chr3L_21510001 RAL-359 1526 chr3L 20525228 20525230 chr3L 24821493 24821493 4 4296264 11.5 11.5 11.5 0.3 4296265 chr3L 20525228 intron CG4825 - chr3L 22673360 intron CG14457 + chr3L 24821493 intergenic not near genes chr3L_4_22670001 chr3L_22670001 RAL-359 1527 chr3L 23289016 23289037 chr3L 25843677 25843698 4 2554661 20.5 15.5 18.0 0.2 2554682 chr3L 23289016 intergenic not near genes chr3L 24566357 intergenic not near genes chr3L 25843698 intron CG40178 - chr3L_4_24565001 chr3L_24565001 RAL-359 1528 chr3L 26008749 26008798 chr3L 26008916 26008965 7 166 1.5 3.5 2.5 2.0 216 chr3L 26008749 intron CG40178 - chr3L 26008857 intron CG40178 - chr3L 26008965 intron CG40178 - chr3L_7_26005001 chr3L_26005001 RAL-359 1529 chr3L 27390687 27390711 chr3L 27390786 27390810 6 97 28.0 26.0 27.0 0.2 123 chr3L 27390687 intron Dbp80 + chr3L 27390748 intron Dbp80 + chr3L 27390810 intron Dbp80 + chr3L_6_27390001 chr3L_27390001 RAL-359 1530 chr3L 27420732 27420750 chr3L 27423373 27423391 4 2641 26.0 9.0 17.5 0.2 2659 chr3L 27420732 exon Dbp80 + chr3L 27422062 exon Dbp80 + chr3L 27423391 intergenic not near genes chr3L_4_27420001 chr3L_27420001 RAL-359 1531 chr3R 97110 97112 chr3R 99846 99850 5 2736 11.5 7.0 9.2 0.5 2740 chr3R 97110 intergenic not near genes chr3R 98480 intergenic not near genes chr3R 99850 intergenic not near genes chr3R_5_95001 chr3R_95001 RAL-359 1532 chr3R 1021762 1021802 chr3R 1021996 1022036 4 234 22.5 22.5 22.5 0.2 274 chr3R 1021762 intergenic not near genes chr3R 1021899 intergenic not near genes chr3R 1022036 intergenic not near genes chr3R_4_1020001 chr3R_1020001 RAL-359 1533 chr3R 3178695 3178715 chr3R 3595193 3595195 5 416496 7.5 13.5 10.5 0.4 416500 chr3R 3178695 intron CG42617 - chr3R 3386945 intergenic not near genes chr3R 3595195 intergenic not near genes chr3R_5_3385001 chr3R_3385001 RAL-359 1534 chr3R 4012484 4012528 chr3R 4012593 4012637 4 109 12.5 15.0 13.8 0.3 153 chr3R 4012484 intergenic not near genes chr3R 4012560 intergenic not near genes chr3R 4012637 intergenic not near genes chr3R_4_4010001 chr3R_4010001 RAL-359 1535 chr3R 4105022 4105062 chr3R 4110246 4110286 copia 4 5224 2.5 1.5 2.0 1.3 5264 chr3R 4105022 intergenic not near genes chr3R 4107654 intergenic not near genes chr3R 4110286 intergenic not near genes chr3R_4_4105001 chr3R_4105001 RAL-359 1536 chr3R 4132880 4132928 chr3R 4133054 4133096 4 172 1.5 1.5 1.5 1.6 216 chr3R 4132880 intron Gfat1 + chr3R 4132988 intron Gfat1 + chr3R 4133096 intron Gfat1 + chr3R_4_4130001 chr3R_4130001 RAL-359 1537 chr3R 4206050 4206102 chr3R 4211645 4211697 mdg3 12 5592 1.0 2.0 1.5 4.8 5647 chr3R 4206050 intron CG14636 - chr3R 4208874 intron CG14636 - chr3R 4211697 intron CG14636 - chr3R_12_4205001 chr3R_4205001 RAL-359 1538 chr3R 4366740 4366789 chr3R 4375143 4375166 roo 17 8401 6.0 2.5 4.2 3.3 8426 chr3R 4366740 3` UTR CG1090 + chr3R 4370953 intergenic not near genes chr3R 4375166 5` UTR CR44922 + chr3R_17_4370001 chr3R_4370001 RAL-359 1539 chr3R 4408410 4408433 chr3R 4412734 4412757 Juan 9 4324 5.5 7.5 6.5 1.2 4347 chr3R 4408410 intron CG32944 - chr3R 4410584 intron CG32944 - chr3R 4412757 intron CG32944 - chr3R_9_4410001 chr3R_4410001 RAL-359 1540 chr3R 4576511 4576557 chr3R 4576648 4576694 5 137 6.5 5.0 5.8 0.7 183 chr3R 4576511 intergenic not near genes chr3R 4576602 intergenic not near genes chr3R 4576694 intergenic not near genes chr3R_5_4575001 chr3R_4575001 RAL-359 1541 chr3R 4609530 4609580 chr3R 4610714 4610759 1360 12 1183 7.5 7.0 7.2 1.5 1229 chr3R 4609530 intergenic not near genes chr3R 4610144 intergenic not near genes chr3R 4610759 intergenic not near genes chr3R_12_4610001 chr3R_4610001 RAL-359 1542 chr3R 4680691 4680734 chr3R 4680789 4680833 7 99 6.5 4.0 5.2 1.1 142 chr3R 4680691 intron CG43427 + chr3R 4680762 intron CG43427 + chr3R 4680833 5` UTR CG43427 + chr3R_7_4680001 chr3R_4680001 RAL-359 1543 chr3R 4733653 4733694 chr3R 4733797 4733838 11 144 7.5 5.5 6.5 1.5 185 chr3R 4733653 intergenic not near genes chr3R 4733746 intergenic not near genes chr3R 4733838 intergenic not near genes chr3R_11_4730001 chr3R_4730001 RAL-359 1544 chr3R 4753220 4753266 chr3R 4757543 4757588 F-element 13 4319 10.0 4.5 7.2 1.6 4368 chr3R 4753220 intron,intron atms +,CG44098 - chr3R 4755404 intron,intron atms +,CG44098 - chr3R 4757588 intron,exon atms +,CG44098 - chr3R_13_4755001 chr3R_4755001 RAL-359 1545 chr3R 4796111 4796141 chr3R 4796254 4796284 8 142 7.5 7.0 7.2 1.0 173 chr3R 4796111 intron ctrip - chr3R 4796198 intron ctrip - chr3R 4796284 intron ctrip - chr3R_8_4795001 chr3R_4795001 RAL-359 1546 chr3R 4861557 4861596 chr3R 4861647 4861695 13 89 4.5 1.5 3.0 3.2 138 chr3R 4861557 intron opa + chr3R 4861626 intron opa + chr3R 4861695 intron opa + chr3R_13_4860001 chr3R_4860001 RAL-359 1547 chr3R 4922322 4922357 chr3R 4922421 4922456 12 99 5.0 3.5 4.2 2.3 134 chr3R 4922322 intron Cdep + chr3R 4922389 intron Cdep + chr3R 4922456 intron Cdep + chr3R_12_4920001 chr3R_4920001 RAL-359 1548 chr3R 4943595 4943623 chr3R 4943720 4943738 8 123 6.0 1.5 3.8 1.7 143 chr3R 4943595 intron Cdep + chr3R 4943666 intron Cdep + chr3R 4943738 intron Cdep + chr3R_8_4940001 chr3R_4940001 RAL-359 1549 chr3R 4965988 4966035 chr3R 4966100 4966147 5 112 3.5 0.0 1.8 1.8 159 chr3R 4965988 intron CG1124 + chr3R 4966068 intron CG1124 + chr3R 4966147 intron CG1124 + chr3R_5_4965001 chr3R_4965001 RAL-359 1550 chr3R 5045823 5045852 chr3R 5052945 5052973 HMS-Beagle 7 7122 4.5 5.0 4.8 1.2 7150 chr3R 5045823 3` UTR CR43635 - chr3R 5049398 intergenic not near genes chr3R 5052973 intergenic CR45588 - chr3R_7_5045001 chr3R_5045001 RAL-359 1551 chr3R 5067970 5068010 chr3R 5073507 5073547 mdg3 27 5536 9.5 11.5 10.5 2.3 5577 chr3R 5067970 intergenic not near genes chr3R 5070758 intergenic not near genes chr3R 5073547 intergenic not near genes chr3R_27_5070001 chr3R_5070001 RAL-359 1552 chr3R 5100274 5100298 chr3R 5100366 5100411 5 97 3.5 3.0 3.2 1.2 137 chr3R 5100274 intergenic not near genes chr3R 5100342 intergenic not near genes chr3R 5100411 intergenic not near genes chr3R_5_5100001 chr3R_5100001 RAL-359 1553 chr3R 5107215 5107236 chr3R 5107401 5107416 6 184 5.5 10.5 8.0 0.7 201 chr3R 5107215 intergenic not near genes chr3R 5107316 intergenic not near genes chr3R 5107416 intergenic not near genes chr3R_6_5105001 chr3R_5105001 RAL-359 1554 chr3R 5158123 5158157 chr3R 5158236 5158270 10 112 9.5 7.5 8.5 1.1 147 chr3R 5158123 intron dpr16 + chr3R 5158196 intron dpr16 + chr3R 5158270 intron dpr16 + chr3R_10_5155001 chr3R_5155001 RAL-359 1555 chr3R 5162936 5162959 chr3R 5163108 5163131 7 172 5.5 6.5 6.0 1.0 195 chr3R 5162936 intron dpr16 + chr3R 5163034 intron dpr16 + chr3R 5163131 intron dpr16 + chr3R_7_5160001 chr3R_5160001 RAL-359 1556 chr3R 5278084 5278121 chr3R 5278172 5278222 11 94 1.5 6.0 3.8 2.3 138 chr3R 5278084 intron mtd - chr3R 5278153 intron mtd - chr3R 5278222 intron mtd - chr3R_11_5275001 chr3R_5275001 RAL-359 1557 chr3R 5292394 5292431 chr3R 5292491 5292526 9 97 9.0 7.5 8.2 1.0 132 chr3R 5292394 intron mtd - chr3R 5292460 intron mtd - chr3R 5292526 intron mtd - chr3R_9_5290001 chr3R_5290001 RAL-359 1558 chr3R 5315833 5315865 chr3R 5315933 5315934 8 96 6.5 2.5 4.5 1.5 101 chr3R 5315833 intron mtd - chr3R 5315884 intron mtd - chr3R 5315934 intron mtd - chr3R_8_5315001 chr3R_5315001 RAL-359 1559 chr3R 5338380 5338420 chr3R 5343577 5343606 Rt1c 13 5195 6.0 5.0 5.5 2.0 5226 chr3R 5338380 intron mtd - chr3R 5340993 intron mtd - chr3R 5343606 intron mtd - chr3R_13_5340001 chr3R_5340001 RAL-359 1560 chr3R 5385973 5385997 chr3R 5386164 5386188 6 190 14.0 19.0 16.5 0.3 215 chr3R 5385973 intron kkv - chr3R 5386080 intron kkv - chr3R 5386188 intron kkv - chr3R_6_5385001 chr3R_5385001 RAL-359 1561 chr3R 5445940 5445979 chr3R 5452420 5452459 Burdock 13 6480 5.5 2.0 3.8 2.7 6519 chr3R 5445940 intron CG14669 + chr3R 5449200 intron CG14669 + chr3R 5452459 intron CG14669 + chr3R_13_5445001 chr3R_5445001 RAL-359 1562 chr3R 5506832 5506869 chr3R 5506984 5507021 10 151 6.0 5.0 5.5 1.5 189 chr3R 5506832 intergenic not near genes chr3R 5506926 intergenic not near genes chr3R 5507021 intergenic not near genes chr3R_10_5505001 chr3R_5505001 RAL-359 1563 chr3R 5578781 5578813 chr3R 5578878 5578910 10 96 11.5 9.0 10.2 0.9 129 chr3R 5578781 3` UTR CRMP + chr3R 5578846 3` UTR CRMP + chr3R 5578910 3` UTR CRMP + chr3R_10_5575001 chr3R_5575001 RAL-359 1564 chr3R 5745995 5746044 chr3R 5746255 5746302 pogo 22 260 1.5 7.5 4.5 4.0 307 chr3R 5745995 3` UTR Madm + chr3R 5746148 3` UTR Madm + chr3R 5746302 3` UTR Madm + chr3R_22_5745001 chr3R_5745001 RAL-359 1565 chr3R 5746992 5747035 chr3R 5753203 5753226 diver 9 6207 6.0 4.5 5.2 1.5 6234 chr3R 5746992 intergenic Madm + chr3R 5750109 intergenic not near genes chr3R 5753226 intergenic CG2091 - chr3R_9_5750001 chr3R_5750001 RAL-359 1566 chr3R 5765607 5765649 chr3R 5765711 5765728 4 98 16.0 19.0 17.5 0.2 121 chr3R 5765607 intron CG2082 - chr3R 5765668 intron CG2082 - chr3R 5765728 intron CG2082 - chr3R_4_5765001 chr3R_5765001 RAL-359 1567 chr3R 5772365 5772408 chr3R 5772543 5772586 16 178 2.5 3.5 3.0 4.0 221 chr3R 5772365 intron CG2082 - chr3R 5772476 intron CG2082 - chr3R 5772586 intron CG2082 - chr3R_16_5770001 chr3R_5770001 RAL-359 1568 chr3R 5809093 5809142 chr3R 5809354 5809391 pogo 10 257 5.5 4.0 4.8 1.7 298 chr3R 5809093 3` UTR CG11000 + chr3R 5809242 3` UTR CG11000 + chr3R 5809391 3` UTR CG11000 + chr3R_10_5805001 chr3R_5805001 RAL-359 1569 chr3R 5822363 5822408 chr3R 5823550 5823595 1360 15 1187 2.0 5.0 3.5 3.3 1232 chr3R 5822363 3` UTR CG2023 - chr3R 5822979 3` UTR CG2023 - chr3R 5823595 3` UTR CG2023 - chr3R_15_5820001 chr3R_5820001 RAL-359 1570 chr3R 5846862 5846907 chr3R 5846955 5847003 11 95 6.5 7.0 6.8 1.4 141 chr3R 5846862 intergenic CG1213 +,CG14676 + chr3R 5846932 intergenic CG14676 +,CG1213 + chr3R 5847003 intergenic CG14676 +,CG1213 + chr3R_11_5845001 chr3R_5845001 RAL-359 1571 chr3R 5880784 5880814 chr3R 5881135 5881180 5 363 5.5 6.5 6.0 0.7 396 chr3R 5880784 intron CG34113 - chr3R 5880982 intron CG34113 - chr3R 5881180 intron CG34113 - chr3R_5_5880001 chr3R_5880001 RAL-359 1572 chr3R 5896947 5897000 chr3R 5897326 5897379 7 374 7.0 7.0 7.0 0.9 432 chr3R 5896947 intron CG34113 - chr3R 5897163 intron CG34113 - chr3R 5897379 intron CG34113 - chr3R_7_5895001 chr3R_5895001 RAL-359 1573 chr3R 5927539 5927581 chr3R 5927799 5927828 pogo 8 254 6.5 6.0 6.2 1.1 289 chr3R 5927539 intron CG34113 - chr3R 5927684 intron CG34113 - chr3R 5927828 intron CG34113 - chr3R_8_5925001 chr3R_5925001 RAL-359 1574 chr3R 5935348 5935390 chr3R 5935437 5935486 9 95 4.0 3.0 3.5 2.0 138 chr3R 5935348 intron CG34113 - chr3R 5935417 intron CG34113 - chr3R 5935486 intron CG34113 - chr3R_9_5935001 chr3R_5935001 RAL-359 1575 chr3R 5988890 5988905 chr3R 5989105 5989121 4 217 11.5 5.0 8.2 0.4 231 chr3R 5988890 intergenic CR44927 + chr3R 5989006 intergenic CR44927 + chr3R 5989121 intergenic CR44927 + chr3R_4_5985001 chr3R_5985001 RAL-359 1576 chr3R 5988906 5988932 chr3R 5989103 5989153 5 210 7.5 5.0 6.2 0.7 247 chr3R 5988906 intergenic CR44927 + chr3R 5989030 intergenic CR44927 + chr3R 5989153 intergenic CR44927 + chr3R_5_5985001 chr3R_5985001 RAL-359 1577 chr3R 6104333 6104378 chr3R 6104475 6104520 8 142 7.0 6.5 6.8 1.0 187 chr3R 6104333 intron CR44929 - chr3R 6104426 intron CR44929 - chr3R 6104520 intron CR44929 - chr3R_8_6100001 chr3R_6100001 RAL-359 1578 chr3R 6121170 6121180 chr3R 6121408 6121418 BS 5 238 0.0 6.0 3.0 1.2 248 chr3R 6121170 intergenic not near genes chr3R 6121294 intergenic not near genes chr3R 6121418 intergenic not near genes chr3R_5_6120001 chr3R_6120001 RAL-359 1579 chr3R 6158495 6158534 chr3R 6167092 6167137 Tirant 7 8599 3.5 1.5 2.5 2.0 8642 chr3R 6158495 intergenic not near genes chr3R 6162816 intergenic not near genes chr3R 6167137 intergenic CG1077 + chr3R_7_6160001 chr3R_6160001 RAL-359 1580 chr3R 6175155 6175205 chr3R 6182447 6182470 HMS-Beagle2 15 7286 2.0 4.0 3.0 3.8 7315 chr3R 6175155 intergenic Osi1 + chr3R 6178812 intron CR45194 + chr3R 6182470 intergenic CR45194 + chr3R_15_6175001 chr3R_6175001 RAL-359 1581 chr3R 6194934 6194979 chr3R 6195029 6195079 19 97 6.0 9.0 7.5 2.2 145 chr3R 6194934 3` UTR NPFR + chr3R 6195006 3` UTR NPFR + chr3R 6195079 3` UTR NPFR + chr3R_19_6195001 chr3R_6195001 RAL-359 1582 chr3R 6199220 6199258 chr3R 6201025 6201063 5 1810 21.5 28.0 24.8 0.2 1843 chr3R 6199220 5` UTR Osi24 + chr3R 6200142 intron Osi24 + chr3R 6201063 intron Osi24 + chr3R_5_6200001 chr3R_6200001 RAL-359 1583 chr3R 6283289 6283334 chr3R 6283396 6283441 4 107 19.0 16.5 17.8 0.2 152 chr3R 6283289 intergenic not near genes chr3R 6283365 intergenic not near genes chr3R 6283441 intergenic not near genes chr3R_4_6280001 chr3R_6280001 RAL-359 1584 chr3R 6415206 6415251 chr3R 6415322 6415367 10 114 3.5 3.0 3.2 2.4 161 chr3R 6415206 intron gpp + chr3R 6415286 intron gpp + chr3R 6415367 intron gpp + chr3R_10_6415001 chr3R_6415001 RAL-359 1585 chr3R 6428790 6428822 chr3R 6428912 6428927 4 118 18.5 20.5 19.5 0.2 137 chr3R 6428790 intron gpp + chr3R 6428858 intron gpp + chr3R 6428927 intron gpp + chr3R_4_6425001 chr3R_6425001 RAL-359 1586 chr3R 6510004 6510040 chr3R 6515105 6515139 jockey 6 5101 6.0 3.5 4.8 1.0 5135 chr3R 6510004 intergenic not near genes chr3R 6512572 intergenic not near genes chr3R 6515139 intergenic not near genes chr3R_6_6510001 chr3R_6510001 RAL-359 1587 chr3R 6526343 6526358 chr3R 6526545 6526570 4 210 8.0 9.0 8.5 0.4 227 chr3R 6526343 intergenic not near genes chr3R 6526456 intergenic not near genes chr3R 6526570 intergenic not near genes chr3R_4_6525001 chr3R_6525001 RAL-359 1588 chr3R 6526362 6526372 chr3R 6526541 6526584 5 205 6.5 9.0 7.8 0.6 222 chr3R 6526362 intergenic not near genes chr3R 6526473 intergenic not near genes chr3R 6526584 intergenic not near genes chr3R_5_6525001 chr3R_6525001 RAL-359 1589 chr3R 6624245 6624269 chr3R 6624347 6624371 9 102 7.0 6.0 6.5 1.2 126 chr3R 6624245 intergenic not near genes chr3R 6624308 intergenic not near genes chr3R 6624371 intergenic not near genes chr3R_9_6620001 chr3R_6620001 RAL-359 1590 chr3R 6812257 6812302 chr3R 6812372 6812395 9 104 5.5 6.5 6.0 1.3 138 chr3R 6812257 intron CR42651 - chr3R 6812326 intron CR42651 - chr3R 6812395 intron CR42651 - chr3R_9_6810001 chr3R_6810001 RAL-359 1591 chr3R 6856378 6856394 chr3R 6856500 6856531 5 134 4.0 1.5 2.8 1.3 153 chr3R 6856378 intergenic not near genes chr3R 6856454 intergenic not near genes chr3R 6856531 intergenic not near genes chr3R_5_6855001 chr3R_6855001 RAL-359 1592 chr3R 6862199 6862251 chr3R 6862306 6862358 13 107 4.5 3.0 3.8 2.7 159 chr3R 6862199 intergenic not near genes chr3R 6862278 intergenic not near genes chr3R 6862358 intergenic not near genes chr3R_13_6860001 chr3R_6860001 RAL-359 1593 chr3R 6967710 6967757 chr3R 6967816 6967859 6 105 7.0 7.0 7.0 0.8 149 chr3R 6967710 intron Antp - chr3R 6967784 intron Antp - chr3R 6967859 intron Antp - chr3R_6_6965001 chr3R_6965001 RAL-359 1594 chr3R 7026877 7026883 chr3R 7026957 7026989 4 95 3.0 7.5 5.2 0.6 112 chr3R 7026877 intergenic not near genes chr3R 7026933 intergenic not near genes chr3R 7026989 intergenic not near genes chr3R_4_7025001 chr3R_7025001 RAL-359 1595 chr3R 7036749 7036786 chr3R 7036848 7036885 11 98 5.5 4.5 5.0 1.8 136 chr3R 7036749 intergenic not near genes chr3R 7036817 intergenic not near genes chr3R 7036885 intergenic not near genes chr3R_11_7035001 chr3R_7035001 RAL-359 1596 chr3R 7103285 7103294 chr3R 7103365 7103390 6 91 6.0 2.5 4.2 1.2 105 chr3R 7103285 intron Alh - chr3R 7103338 intron Alh - chr3R 7103390 intron Alh - chr3R_6_7100001 chr3R_7100001 RAL-359 1597 chr3R 7103298 7103313 chr3R 7103364 7103409 7 92 3.5 2.5 3.0 1.8 111 chr3R 7103298 intron Alh - chr3R 7103354 intron Alh - chr3R 7103409 intron Alh - chr3R_7_7100001 chr3R_7100001 RAL-359 1598 chr3R 7126483 7126533 chr3R 7126598 7126648 13 115 3.0 3.0 3.0 3.2 165 chr3R 7126483 3` UTR,3` UTR CG10098 +,CG10068 - chr3R 7126566 3` UTR CG10068 - chr3R 7126648 3` UTR CG10068 - chr3R_13_7125001 chr3R_7125001 RAL-359 1599 chr3R 7132835 7132872 chr3R 7132946 7132982 4 108 16.0 23.0 19.5 0.2 147 chr3R 7132835 intergenic CG31493 + chr3R 7132908 intergenic CG31493 + chr3R 7132982 intergenic CG31493 + chr3R_4_7130001 chr3R_7130001 RAL-359 1600 chr3R 7173659 7173708 chr3R 7173759 7173807 12 100 5.0 3.0 4.0 2.4 148 chr3R 7173659 intron sas + chr3R 7173733 intron sas + chr3R 7173807 intron sas + chr3R_12_7170001 chr3R_7170001 RAL-359 1601 chr3R 7319777 7319785 chr3R 7319878 7319884 6 100 7.5 5.5 6.5 0.8 107 chr3R 7319777 intergenic not near genes chr3R 7319830 intergenic not near genes chr3R 7319884 intergenic not near genes chr3R_6_7315001 chr3R_7315001 RAL-359 1602 chr3R 7404942 7404970 chr3R 7405038 7405066 5 96 0.0 1.5 0.8 2.8 124 chr3R 7404942 intergenic not near genes chr3R 7405004 intergenic not near genes chr3R 7405066 intergenic not near genes chr3R_5_7405001 chr3R_7405001 RAL-359 1603 chr3R 7511742 7511793 chr3R 7511843 7511894 11 101 5.5 5.0 5.2 1.8 152 chr3R 7511742 intron alpha-Est8 - chr3R 7511818 intron alpha-Est8 - chr3R 7511894 intron alpha-Est8 - chr3R_11_7510001 chr3R_7510001 RAL-359 1604 chr3R 7542455 7542462 chr3R 7542552 7542559 5 97 3.0 3.5 3.2 1.2 104 chr3R 7542455 intron alpha-Est2 + chr3R 7542507 intron alpha-Est2 + chr3R 7542559 intron alpha-Est2 + chr3R_5_7540001 chr3R_7540001 RAL-359 1605 chr3R 7548589 7548630 chr3R 7548687 7548729 14 98 5.0 4.5 4.8 2.4 140 chr3R 7548589 intron alpha-Est1 - chr3R 7548659 intron alpha-Est1 - chr3R 7548729 intron alpha-Est1 - chr3R_14_7545001 chr3R_7545001 RAL-359 1606 chr3R 7556934 7556954 chr3R 7557031 7557067 5 108 0.0 2.0 1.0 2.5 133 chr3R 7556934 intergenic not near genes chr3R 7557000 intergenic not near genes chr3R 7557067 intergenic not near genes chr3R_5_7555001 chr3R_7555001 RAL-359 1607 chr3R 7621531 7621558 chr3R 7621642 7621668 5 110 0.5 1.5 1.0 2.5 137 chr3R 7621531 intron CG34127 - chr3R 7621600 intron CG34127 - chr3R 7621668 intron CG34127 - chr3R_5_7620001 chr3R_7620001 RAL-359 1608 chr3R 7655155 7655201 chr3R 7655318 7655364 6 160 4.0 4.0 4.0 1.2 209 chr3R 7655155 intergenic not near genes chr3R 7655260 intergenic not near genes chr3R 7655364 intergenic not near genes chr3R_6_7655001 chr3R_7655001 RAL-359 1609 chr3R 7694560 7694610 chr3R 7713641 7713690 invader3 14 19081 1.0 4.0 2.5 4.0 19130 chr3R 7694560 3` UTR Nlg1 + chr3R 7704125 intergenic not near genes chr3R 7713690 intergenic not near genes chr3R_14_7700001 chr3R_7700001 RAL-359 1610 chr3R 7729454 7729497 chr3R 7737404 7737455 Stalker2 13 7957 7.0 4.5 5.8 1.9 8001 chr3R 7729454 intergenic not near genes chr3R 7733454 intergenic not near genes chr3R 7737455 intergenic not near genes chr3R_13_7730001 chr3R_7730001 RAL-359 1611 chr3R 7821698 7821734 chr3R 7821814 7821850 4 116 8.0 6.0 7.0 0.5 152 chr3R 7821698 intron CG34384 + chr3R 7821774 intron CG34384 + chr3R 7821850 intron CG34384 + chr3R_4_7820001 chr3R_7820001 RAL-359 1612 chr3R 7857562 7857597 chr3R 7857669 7857704 4 107 17.5 16.0 16.8 0.2 142 chr3R 7857562 3` UTR CG17816 - chr3R 7857633 3` UTR CG17816 - chr3R 7857704 3` UTR CG17816 - chr3R_4_7855001 chr3R_7855001 RAL-359 1613 chr3R 7956613 7956656 chr3R 7956724 7956769 14 110 7.0 6.5 6.8 1.8 156 chr3R 7956613 intron dsx - chr3R 7956691 intron dsx - chr3R 7956769 intron dsx - chr3R_14_7955001 chr3R_7955001 RAL-359 1614 chr3R 7973301 7973336 chr3R 7974383 7974418 1360 9 1081 3.5 5.5 4.5 1.6 1117 chr3R 7973301 intergenic not near genes chr3R 7973860 intergenic not near genes chr3R 7974418 3` UTR CD98hc - chr3R_9_7970001 chr3R_7970001 RAL-359 1615 chr3R 7993186 7993219 chr3R 7993297 7993337 6 117 4.5 7.0 5.8 0.9 151 chr3R 7993186 intron CG2781 - chr3R 7993262 intron CG2781 - chr3R 7993337 intron CG2781 - chr3R_6_7990001 chr3R_7990001 RAL-359 1616 chr3R 8094394 8094435 chr3R 8099719 8099760 Transpac 15 5325 6.5 1.5 4.0 3.0 5366 chr3R 8094394 intron CG7900 + chr3R 8097077 intron CG7900 + chr3R 8099760 intron CG7900 + chr3R_15_8095001 chr3R_8095001 RAL-359 1617 chr3R 8101762 8101781 chr3R 8104859 8104885 G2 9 3096 2.5 6.0 4.2 1.7 3123 chr3R 8101762 exon CG7900 + chr3R 8103324 intron CG7900 + chr3R 8104885 3` UTR CG7900 + chr3R_9_8100001 chr3R_8100001 RAL-359 1618 chr3R 8303555 8303605 chr3R 8305317 8305349 8 1755 26.0 19.0 22.5 0.3 1794 chr3R 8303555 exon nac - chr3R 8304452 3` UTR Sgt1 - chr3R 8305349 intergenic Sgt1 - chr3R_8_8300001 chr3R_8300001 RAL-359 1619 chr3R 8303188 8303218 chr3R 8305406 8305435 4 2218 34.5 27.5 31.0 0.1 2247 chr3R 8303188 exon nac - chr3R 8304312 3` UTR Sgt1 - chr3R 8305435 intergenic Sgt1 - chr3R_4_8300001 chr3R_8300001 RAL-359 1620 chr3R 8326523 8326575 chr3R 8326641 8326672 7 99 8.0 8.0 8.0 0.8 149 chr3R 8326523 intron Poxm - chr3R 8326598 intron Poxm - chr3R 8326672 intron Poxm - chr3R_7_8325001 chr3R_8325001 RAL-359 1621 chr3R 8339244 8339247 chr3R 21907534 21907535 12 13568288 18.5 17.5 18.0 0.6 13568291 chr3R 8339244 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907535 intergenic CG6678 + chr3R_12_15120001 chr3R_15120001 RAL-359 1622 chr3R 8363190 8363221 chr3R 8363287 8363316 4 96 9.0 7.5 8.2 0.4 126 chr3R 8363190 exon CG7963 + chr3R 8363253 exon CG7963 + chr3R 8363316 exon CG7963 + chr3R_4_8360001 chr3R_8360001 RAL-359 1623 chr3R 8393571 8393603 chr3R 8393664 8393707 9 98 1.0 2.5 1.8 3.2 136 chr3R 8393571 intron CG45263 - chr3R 8393639 intron CG45263 - chr3R 8393707 intron CG45263 - chr3R_9_8390001 chr3R_8390001 RAL-359 1624 chr3R 8402995 8403040 chr3R 8412174 8412209 roo 19 9181 5.0 3.5 4.2 3.7 9214 chr3R 8402995 intron CG45263 - chr3R 8407602 intron CG45263 - chr3R 8412209 intron CG45263 - chr3R_19_8405001 chr3R_8405001 RAL-359 1625 chr3R 8439502 8439523 chr3R 8439585 8439614 4 91 6.0 6.0 6.0 0.6 112 chr3R 8439502 intron CG45263 - chr3R 8439558 intron CG45263 - chr3R 8439614 intron CG45263 - chr3R_4_8435001 chr3R_8435001 RAL-359 1626 chr3R 8538327 8538366 chr3R 8538430 8538469 6 100 6.0 4.0 5.0 1.0 142 chr3R 8538327 intergenic not near genes chr3R 8538398 intergenic not near genes chr3R 8538469 intergenic not near genes chr3R_6_8535001 chr3R_8535001 RAL-359 1627 chr3R 8570462 8570509 chr3R 8575118 8575165 HMS-Beagle 13 4653 1.5 5.0 3.2 3.1 4703 chr3R 8570462 intergenic not near genes chr3R 8572814 intergenic not near genes chr3R 8575165 intergenic not near genes chr3R_13_8570001 chr3R_8570001 RAL-359 1628 chr3R 8601755 8601799 chr3R 8610928 8610972 roo 6 9172 3.5 3.0 3.2 1.4 9217 chr3R 8601755 intron 5-HT2B + chr3R 8606364 intron 5-HT2B + chr3R 8610972 intron 5-HT2B + chr3R_6_8605001 chr3R_8605001 RAL-359 1629 chr3R 8614776 8614820 chr3R 8615001 8615002 4 201 2.0 9.0 5.5 0.6 226 chr3R 8614776 intron 5-HT2B + chr3R 8614889 intron 5-HT2B + chr3R 8615002 intron 5-HT2B + chr3R_4_8610001 chr3R_8610001 RAL-359 1630 chr3R 8630881 8630926 chr3R 8631006 8631039 4 122 6.0 2.0 4.0 0.8 158 chr3R 8630881 intergenic not near genes chr3R 8630960 intergenic not near genes chr3R 8631039 intergenic not near genes chr3R_4_8630001 chr3R_8630001 RAL-359 1631 chr3R 8707338 8707376 chr3R 8709799 8709837 jockey 10 2460 4.0 3.5 3.8 2.1 2499 chr3R 8707338 intergenic not near genes chr3R 8708588 intergenic not near genes chr3R 8709837 intergenic not near genes chr3R_10_8705001 chr3R_8705001 RAL-359 1632 chr3R 8894857 8894898 chr3R 8896033 8896074 1360 4 1176 9.5 13.0 11.2 0.3 1217 chr3R 8894857 intron pyd - chr3R 8895466 intron pyd - chr3R 8896074 intron pyd - chr3R_4_8895001 chr3R_8895001 RAL-359 1633 chr3R 8917877 8917912 chr3R 8917972 8918012 9 99 6.5 8.5 7.5 1.1 135 chr3R 8917877 intron pyd - chr3R 8917944 intron pyd - chr3R 8918012 intron pyd - chr3R_9_8915001 chr3R_8915001 RAL-359 1634 chr3R 8948292 8948321 chr3R 8948422 8948432 4 125 10.5 8.5 9.5 0.4 140 chr3R 8948292 intergenic not near genes chr3R 8948362 intergenic not near genes chr3R 8948432 intergenic not near genes chr3R_4_8945001 chr3R_8945001 RAL-359 1635 chr3R 9036363 9036386 chr3R 9036461 9036484 6 98 16.0 12.0 14.0 0.4 121 chr3R 9036363 intron neur - chr3R 9036424 intron neur - chr3R 9036484 intron neur - chr3R_6_9035001 chr3R_9035001 RAL-359 1636 chr3R 9036701 9036739 chr3R 9036817 9036855 12 116 3.5 3.5 3.5 2.7 154 chr3R 9036701 intron neur - chr3R 9036778 intron neur - chr3R 9036855 intron neur - chr3R_12_9035001 chr3R_9035001 RAL-359 1637 chr3R 9082035 9082060 chr3R 9082138 9082174 4 110 7.5 7.5 7.5 0.5 139 chr3R 9082035 intron pum - chr3R 9082104 intron pum - chr3R 9082174 intron pum - chr3R_4_9080001 chr3R_9080001 RAL-359 1638 chr3R 9095272 9095313 chr3R 9095376 9095420 8 107 6.5 4.0 5.2 1.3 148 chr3R 9095272 intron pum - chr3R 9095346 intron pum - chr3R 9095420 intron pum - chr3R_8_9095001 chr3R_9095001 RAL-359 1639 chr3R 9101822 9101871 chr3R 9101940 9101989 11 117 2.0 5.5 3.8 2.3 167 chr3R 9101822 intron pum - chr3R 9101906 intron pum - chr3R 9101989 intron pum - chr3R_11_9100001 chr3R_9100001 RAL-359 1640 chr3R 9108845 9108877 chr3R 9108941 9108973 10 96 7.5 4.0 5.8 1.5 128 chr3R 9108845 intron pum - chr3R 9108909 intron pum - chr3R 9108973 intron pum - chr3R_10_9105001 chr3R_9105001 RAL-359 1641 chr3R 9179474 9179514 chr3R 9181142 9181170 5 1665 6.0 4.5 5.2 0.8 1696 chr3R 9179474 intron pum - chr3R 9180322 intron pum - chr3R 9181170 intron pum - chr3R_5_9180001 chr3R_9180001 RAL-359 1642 chr3R 9294998 9295050 chr3R 9295096 9295148 9 97 3.0 3.0 3.0 2.2 150 chr3R 9294998 3` UTR CG8861 - chr3R 9295073 3` UTR CG8861 - chr3R 9295148 3` UTR CG8861 - chr3R_9_9295001 chr3R_9295001 RAL-359 1643 chr3R 9319558 9319608 chr3R 9320012 9320023 jockey 6 448 4.0 7.0 5.5 0.9 465 chr3R 9319558 intron CG8861 - chr3R 9319790 intron CG8861 - chr3R 9320023 intron CG8861 - chr3R_6_9315001 chr3R_9315001 RAL-359 1644 chr3R 9324347 9324388 chr3R 9324670 9324711 7 323 3.0 4.5 3.8 1.5 364 chr3R 9324347 intron CG8861 - chr3R 9324529 intron CG8861 - chr3R 9324711 intron CG8861 - chr3R_7_9320001 chr3R_9320001 RAL-359 1645 chr3R 9361804 9361838 chr3R 9362065 9362099 pogo 13 261 4.0 7.0 5.5 2.0 295 chr3R 9361804 3` UTR CG45050 + chr3R 9361952 3` UTR CG45050 + chr3R 9362099 3` UTR CG45050 + chr3R_13_9360001 chr3R_9360001 RAL-359 1646 chr3R 9434683 9434711 chr3R 9434783 9434786 8 101 11.0 10.5 10.8 0.7 103 chr3R 9434683 intron ps + chr3R 9434734 intron ps + chr3R 9434786 intron ps + chr3R_8_9430001 chr3R_9430001 RAL-359 1647 chr3R 9611867 9611891 chr3R 9611969 9611993 5 102 3.0 0.0 1.5 2.0 126 chr3R 9611867 intron CG8312 + chr3R 9611930 intron CG8312 + chr3R 9611993 intron CG8312 + chr3R_5_9610001 chr3R_9610001 RAL-359 1648 chr3R 9653135 9653159 chr3R 9653258 9653282 7 123 7.0 14.0 10.5 0.6 147 chr3R 9653135 intron,5` UTR CG9492 -,CG43441 - chr3R 9653208 intron,5` UTR CG9492 -,CG43441 - chr3R 9653282 intron CG9492 - chr3R_7_9650001 chr3R_9650001 RAL-359 1649 chr3R 9699959 9699990 chr3R 9700068 9700099 1360 14 109 10.0 10.5 10.2 1.2 140 chr3R 9699959 intron Unc-115a - chr3R 9700029 intron Unc-115a - chr3R 9700099 intron Unc-115a - chr3R_14_9700001 chr3R_9700001 RAL-359 1650 chr3R 9860140 9860175 chr3R 9860239 9860269 7 97 5.0 4.0 4.5 1.3 129 chr3R 9860140 intron Teh1 - chr3R 9860204 intron Teh1 - chr3R 9860269 intron Teh1 - chr3R_7_9860001 chr3R_9860001 RAL-359 1651 chr3R 10107723 10107773 chr3R 10107964 10108016 18 239 5.0 11.0 8.0 2.0 293 chr3R 10107723 intron Fmr1 - chr3R 10107870 intron Fmr1 - chr3R 10108016 intron Fmr1 - chr3R_18_10105001 chr3R_10105001 RAL-359 1652 chr3R 10174113 10174144 chr3R 10174215 10174246 8 98 8.5 10.5 9.5 0.8 133 chr3R 10174113 intron CG12814 - chr3R 10174180 intron CG12814 - chr3R 10174246 intron CG12814 - chr3R_8_10170001 chr3R_10170001 RAL-359 1653 chr3R 10183081 10183100 chr3R 10183178 10183197 5 97 6.0 4.0 5.0 0.8 116 chr3R 10183081 intron CG12814 - chr3R 10183139 intron CG12814 - chr3R 10183197 intron CG12814 - chr3R_5_10180001 chr3R_10180001 RAL-359 1654 chr3R 10193196 10193246 chr3R 10193304 10193355 10 102 5.0 5.5 5.2 1.6 159 chr3R 10193196 intron Syn + chr3R 10193276 intron Syn + chr3R 10193355 intron Syn + chr3R_10_10190001 chr3R_10190001 RAL-359 1655 chr3R 10231762 10231813 chr3R 10237359 10237410 mdg3 16 5596 4.5 2.5 3.5 3.6 5648 chr3R 10231762 intron CG42795 + chr3R 10234586 intron CG42795 + chr3R 10237410 intron CG42795 + chr3R_16_10230001 chr3R_10230001 RAL-359 1656 chr3R 10255364 10255380 chr3R 10260824 10260840 I-element 10 5460 5.0 3.5 4.2 1.9 5476 chr3R 10255364 3` UTR Sirt6 - chr3R 10258102 intron Sirt6 - chr3R 10260840 exon Sirt6 - chr3R_10_10255001 chr3R_10255001 RAL-359 1657 chr3R 10275562 10275585 chr3R 10275659 10275682 7 97 5.0 8.0 6.5 0.9 120 chr3R 10275562 intron CG43143 + chr3R 10275622 intron CG43143 + chr3R 10275682 intron CG43143 + chr3R_7_10275001 chr3R_10275001 RAL-359 1658 chr3R 10282038 10282086 chr3R 10282169 10282217 8 126 3.0 3.0 3.0 2.0 179 chr3R 10282038 intron CG43143 + chr3R 10282128 intron CG43143 + chr3R 10282217 intron CG43143 + chr3R_8_10280001 chr3R_10280001 RAL-359 1659 chr3R 10417458 10417504 chr3R 10417813 10417859 4 354 4.5 5.5 5.0 0.7 401 chr3R 10417458 intergenic not near genes chr3R 10417658 intergenic not near genes chr3R 10417859 intergenic not near genes chr3R_4_10415001 chr3R_10415001 RAL-359 1660 chr3R 10531847 10531900 chr3R 10531948 10531970 9 97 5.0 1.0 3.0 2.2 123 chr3R 10531847 intron hth - chr3R 10531908 intron hth - chr3R 10531970 intron hth - chr3R_9_10530001 chr3R_10530001 RAL-359 1661 chr3R 10593429 10593454 chr3R 10593532 10593544 4 96 2.0 7.0 4.5 0.7 115 chr3R 10593429 intron hth - chr3R 10593486 intron hth - chr3R 10593544 intron hth - chr3R_4_10590001 chr3R_10590001 RAL-359 1662 chr3R 10723750 10723789 chr3R 10723856 10723895 6 108 9.0 2.5 5.8 0.9 145 chr3R 10723750 intergenic not near genes chr3R 10723822 intergenic not near genes chr3R 10723895 intergenic not near genes chr3R_6_10720001 chr3R_10720001 RAL-359 1663 chr3R 10727629 10727678 chr3R 10727729 10727739 13 95 1.5 1.5 1.5 5.2 110 chr3R 10727629 intergenic not near genes chr3R 10727684 intergenic not near genes chr3R 10727739 intergenic not near genes chr3R_13_10725001 chr3R_10725001 RAL-359 1664 chr3R 10732312 10732338 chr3R 10733204 10733230 9 892 8.0 6.5 7.2 1.1 918 chr3R 10732312 intergenic not near genes chr3R 10732771 intergenic not near genes chr3R 10733230 intergenic not near genes chr3R_9_10730001 chr3R_10730001 RAL-359 1665 chr3R 10745406 10745446 chr3R 10745513 10745553 8 106 4.5 5.0 4.8 1.4 147 chr3R 10745406 intron TkR86C - chr3R 10745480 intron TkR86C - chr3R 10745553 intron TkR86C - chr3R_8_10745001 chr3R_10745001 RAL-359 1666 chr3R 10804194 10804202 chr3R 10811746 10811754 17.6 4 7552 2.0 9.0 5.5 0.6 7560 chr3R 10804194 intergenic CG14692 - chr3R 10807974 intergenic not near genes chr3R 10811754 3` UTR CG14693 - chr3R_4_10805001 chr3R_10805001 RAL-359 1667 chr3R 10904889 10904928 chr3R 10905113 10905145 11 223 6.5 3.0 4.8 1.9 256 chr3R 10904889 intergenic not near genes chr3R 10905017 intergenic not near genes chr3R 10905145 intergenic not near genes chr3R_11_10905001 chr3R_10905001 RAL-359 1668 chr3R 10906821 10906842 chr3R 10906917 10906937 5 96 8.0 8.0 8.0 0.6 116 chr3R 10906821 intergenic not near genes chr3R 10906879 intergenic not near genes chr3R 10906937 intergenic not near genes chr3R_5_10905001 chr3R_10905001 RAL-359 1669 chr3R 10919667 10919717 chr3R 10919765 10919815 9 98 5.5 5.0 5.2 1.5 148 chr3R 10919667 intergenic not near genes chr3R 10919741 intergenic not near genes chr3R 10919815 intergenic not near genes chr3R_9_10915001 chr3R_10915001 RAL-359 1670 chr3R 10920028 10920074 chr3R 10920126 10920171 9 93 6.0 6.5 6.2 1.2 143 chr3R 10920028 intergenic not near genes chr3R 10920100 intergenic not near genes chr3R 10920171 intergenic not near genes chr3R_9_10920001 chr3R_10920001 RAL-359 1671 chr3R 10963543 10963589 chr3R 10963657 10963703 4 113 14.5 11.5 13.0 0.3 160 chr3R 10963543 intergenic not near genes chr3R 10963623 intergenic not near genes chr3R 10963703 intergenic not near genes chr3R_4_10960001 chr3R_10960001 RAL-359 1672 chr3R 11048562 11048600 chr3R 11048666 11048704 4 104 1.5 5.0 3.2 1.0 142 chr3R 11048562 3` UTR CG34114 + chr3R 11048633 3` UTR CG34114 + chr3R 11048704 3` UTR CG34114 + chr3R_4_11045001 chr3R_11045001 RAL-359 1673 chr3R 11056874 11056893 chr3R 11056972 11056991 6 98 6.0 5.5 5.8 0.9 117 chr3R 11056874 intergenic not near genes chr3R 11056932 intergenic not near genes chr3R 11056991 intergenic not near genes chr3R_6_11055001 chr3R_11055001 RAL-359 1674 chr3R 11085456 11085479 chr3R 11085550 11085575 5 96 4.5 6.0 5.2 0.8 119 chr3R 11085456 3` UTR CR44940 - chr3R 11085516 intergenic CR44940 - chr3R 11085575 intergenic CR44940 - chr3R_5_11085001 chr3R_11085001 RAL-359 1675 chr3R 11102305 11102330 chr3R 11102405 11102431 5 100 8.5 7.5 8.0 0.6 126 chr3R 11102305 intergenic not near genes chr3R 11102368 intergenic not near genes chr3R 11102431 intergenic not near genes chr3R_5_11100001 chr3R_11100001 RAL-359 1676 chr3R 11197967 11198014 chr3R 11198085 11198130 8 118 6.5 5.5 6.0 1.1 163 chr3R 11197967 intron cu + chr3R 11198048 intron cu + chr3R 11198130 intron cu + chr3R_8_11195001 chr3R_11195001 RAL-359 1677 chr3R 11242230 11242270 chr3R 11242339 11242379 4 105 12.5 13.0 12.8 0.3 149 chr3R 11242230 3` UTR CG17734 - chr3R 11242304 3` UTR CG17734 - chr3R 11242379 3` UTR CG17734 - chr3R_4_11240001 chr3R_11240001 RAL-359 1678 chr3R 11269441 11269479 chr3R 11269586 11269624 9 145 4.0 6.5 5.2 1.5 183 chr3R 11269441 3` UTR CR31386 - chr3R 11269532 3` UTR CR31386 - chr3R 11269624 3` UTR CR31386 - chr3R_9_11265001 chr3R_11265001 RAL-359 1679 chr3R 11294458 11294497 chr3R 11294778 11294812 7 325 6.0 4.5 5.2 1.1 354 chr3R 11294458 intron CR31386 - chr3R 11294635 intron CR31386 - chr3R 11294812 intron CR31386 - chr3R_7_11290001 chr3R_11290001 RAL-359 1680 chr3R 11325357 11325365 chr3R 11325458 11325465 4 102 2.0 4.0 3.0 1.0 108 chr3R 11325357 intergenic not near genes chr3R 11325411 intergenic not near genes chr3R 11325465 intergenic not near genes chr3R_4_11325001 chr3R_11325001 RAL-359 1681 chr3R 11379221 11379258 chr3R 11388396 11388428 roo 5 9174 5.5 4.0 4.8 0.9 9207 chr3R 11379221 intron pros + chr3R 11383824 intron pros + chr3R 11388428 intron pros + chr3R_5_11380001 chr3R_11380001 RAL-359 1682 chr3R 11406278 11406309 chr3R 11406375 11406405 6 97 4.5 4.0 4.2 1.2 127 chr3R 11406278 3` UTR pros + chr3R 11406342 3` UTR pros + chr3R 11406405 3` UTR pros + chr3R_6_11405001 chr3R_11405001 RAL-359 1683 chr3R 11545953 11545999 chr3R 11546067 11546113 13 114 2.5 5.5 4.0 2.6 160 chr3R 11545953 intergenic not near genes chr3R 11546033 intergenic not near genes chr3R 11546113 intergenic not near genes chr3R_13_11545001 chr3R_11545001 RAL-359 1684 chr3R 11642159 11642208 chr3R 11642261 11642295 11 100 6.0 5.0 5.5 1.7 136 chr3R 11642159 intron Csk - chr3R 11642227 intron Csk - chr3R 11642295 intron Csk - chr3R_11_11640001 chr3R_11640001 RAL-359 1685 chr3R 11663241 11663282 chr3R 11664333 11664374 4 1092 23.0 17.5 20.2 0.2 1133 chr3R 11663241 intron CG42327 + chr3R 11663808 intron CG42327 + chr3R 11664374 intron CG42327 + chr3R_4_11660001 chr3R_11660001 RAL-359 1686 chr3R 11694706 11694731 chr3R 11694819 11694844 7 113 3.0 0.0 1.5 2.8 138 chr3R 11694706 intergenic Fer3 - chr3R 11694775 intergenic Fer3 - chr3R 11694844 intergenic not near genes chr3R_7_11690001 chr3R_11690001 RAL-359 1687 chr3R 11710193 11710237 chr3R 11710291 11710317 9 89 8.0 8.0 8.0 1.0 124 chr3R 11710193 intergenic not near genes chr3R 11710255 intergenic not near genes chr3R 11710317 intergenic not near genes chr3R_9_11710001 chr3R_11710001 RAL-359 1688 chr3R 11841041 11841099 chr3R 11846251 11846276 BS 9 5193 1.5 0.5 1.0 4.5 5235 chr3R 11841041 intron CG6959 - chr3R 11843658 intron CG6959 - chr3R 11846276 intron CG6959 - chr3R_9_11840001 chr3R_11840001 RAL-359 1689 chr3R 11914354 11914397 chr3R 11914459 11914502 14 104 5.0 7.0 6.0 2.0 148 chr3R 11914354 intron Cad87A - chr3R 11914428 intron Cad87A - chr3R 11914502 intron Cad87A - chr3R_14_11910001 chr3R_11910001 RAL-359 1690 chr3R 11916418 11916445 chr3R 11916507 11916544 10 96 4.0 3.5 3.8 2.1 126 chr3R 11916418 intron Cad87A - chr3R 11916481 intron Cad87A - chr3R 11916544 intron Cad87A - chr3R_10_11915001 chr3R_11915001 RAL-359 1691 chr3R 11919298 11919336 chr3R 11919399 11919444 7 96 3.5 5.5 4.5 1.3 146 chr3R 11919298 intron Cad87A - chr3R 11919371 intron Cad87A - chr3R 11919444 intron Cad87A - chr3R_7_11915001 chr3R_11915001 RAL-359 1692 chr3R 11930213 11930269 chr3R 11930317 11930373 18 102 9.0 9.5 9.2 1.8 160 chr3R 11930213 intron Cad87A - chr3R 11930293 intron Cad87A - chr3R 11930373 intron Cad87A - chr3R_18_11930001 chr3R_11930001 RAL-359 1693 chr3R 11943192 11943218 chr3R 11943551 11943589 4 361 2.5 7.0 4.8 0.7 397 chr3R 11943192 intron Cad87A - chr3R 11943390 intron Cad87A - chr3R 11943589 intron Cad87A - chr3R_4_11940001 chr3R_11940001 RAL-359 1694 chr3R 11945375 11945399 chr3R 11945487 11945517 6 116 2.5 2.5 2.5 1.7 142 chr3R 11945375 intron Cad87A - chr3R 11945446 intron Cad87A - chr3R 11945517 intron Cad87A - chr3R_6_11945001 chr3R_11945001 RAL-359 1695 chr3R 11957833 11957876 chr3R 11958136 11958166 S-element 5 295 4.0 0.0 2.0 1.7 333 chr3R 11957833 intergenic not near genes chr3R 11958000 intergenic not near genes chr3R 11958166 intergenic not near genes chr3R_5_11955001 chr3R_11955001 RAL-359 1696 chr3R 12022881 12022912 chr3R 12025074 12025088 pogo 8 2194 5.5 9.0 7.2 1.0 2207 chr3R 12022881 intergenic not near genes chr3R 12023984 intergenic not near genes chr3R 12025088 intergenic not near genes chr3R_8_12020001 chr3R_12020001 RAL-359 1697 chr3R 12058702 12058712 chr3R 12059159 12059176 4 462 4.5 6.0 5.2 0.6 474 chr3R 12058702 intergenic not near genes chr3R 12058939 intergenic not near genes chr3R 12059176 intergenic not near genes chr3R_4_12055001 chr3R_12055001 RAL-359 1698 chr3R 12066057 12066097 chr3R 12066158 12066198 6 100 7.5 5.5 6.5 0.8 141 chr3R 12066057 intergenic not near genes chr3R 12066128 intergenic not near genes chr3R 12066198 intergenic not near genes chr3R_6_12065001 chr3R_12065001 RAL-359 1699 chr3R 12088105 12088325 chr3R 12088204 12088419 6 106 6.0 8.0 7.0 0.8 314 chr3R 12088105 intron CG14741 - chr3R 12088262 intron CG14741 - chr3R 12088419 intron CG14741 - chr3R_6_12085001 chr3R_12085001 RAL-359 1700 chr3R 12097231 12097261 chr3R 12097349 12097385 6 123 12.5 9.5 11.0 0.5 154 chr3R 12097231 intron dpr17 + chr3R 12097308 intron dpr17 + chr3R 12097385 intron dpr17 + chr3R_6_12095001 chr3R_12095001 RAL-359 1701 chr3R 12169214 12169219 chr3R 12169312 12169317 4 98 6.5 4.5 5.5 0.6 103 chr3R 12169214 intergenic not near genes chr3R 12169266 intergenic not near genes chr3R 12169317 intergenic not near genes chr3R_4_12165001 chr3R_12165001 RAL-359 1702 chr3R 12188856 12188887 chr3R 12188953 12188985 4 92 17.0 15.5 16.2 0.2 129 chr3R 12188856 intergenic not near genes chr3R 12188920 intergenic not near genes chr3R 12188985 intergenic not near genes chr3R_4_12185001 chr3R_12185001 RAL-359 1703 chr3R 12202270 12202320 chr3R 12202399 12202444 5 127 9.0 6.5 7.8 0.6 174 chr3R 12202270 intergenic not near genes chr3R 12202357 intergenic not near genes chr3R 12202444 intergenic not near genes chr3R_5_12200001 chr3R_12200001 RAL-359 1704 chr3R 12314219 12314254 chr3R 12314339 12314388 12 130 12.5 13.5 13.0 0.9 169 chr3R 12314219 intergenic not near genes chr3R 12314304 intergenic not near genes chr3R 12314388 intergenic not near genes chr3R_12_12310001 chr3R_12310001 RAL-359 1705 chr3R 12328158 12328192 chr3R 12328275 12328315 6 122 4.0 1.5 2.8 1.6 157 chr3R 12328158 intergenic CR45584 + chr3R 12328236 intergenic CR45584 + chr3R 12328315 intergenic CR45584 + chr3R_6_12325001 chr3R_12325001 RAL-359 1706 chr3R 12406490 12406518 chr3R 12406594 12406596 6 100 9.0 11.0 10.0 0.5 106 chr3R 12406490 intergenic CG5167 +,Cyp9f2 - chr3R 12406543 5` UTR CG5167 + chr3R 12406596 5` UTR CG5167 + chr3R_6_12405001 chr3R_12405001 RAL-359 1707 chr3R 12436437 12436468 chr3R 12436544 12436552 5 93 17.0 11.5 14.2 0.3 115 chr3R 12436437 exon Desat2 + chr3R 12436494 exon Desat2 + chr3R 12436552 exon Desat2 + chr3R_5_12435001 chr3R_12435001 RAL-359 1708 chr3R 12532268 12532289 chr3R 12532370 12532391 5 100 6.0 7.5 6.8 0.6 123 chr3R 12532268 intron Octbeta3R - chr3R 12532330 intron Octbeta3R - chr3R 12532391 intron Octbeta3R - chr3R_5_12530001 chr3R_12530001 RAL-359 1709 chr3R 12598989 12599025 chr3R 12599149 12599170 5 154 3.5 6.5 5.0 0.8 181 chr3R 12598989 intergenic not near genes chr3R 12599080 intergenic not near genes chr3R 12599170 intergenic not near genes chr3R_5_12595001 chr3R_12595001 RAL-359 1710 chr3R 12599368 12599405 chr3R 12599471 12599494 5 100 8.0 7.5 7.8 0.6 126 chr3R 12599368 intergenic not near genes chr3R 12599431 intergenic not near genes chr3R 12599494 intergenic not near genes chr3R_5_12595001 chr3R_12595001 RAL-359 1711 chr3R 12704831 12704854 chr3R 12704928 12704953 4 98 13.0 12.0 12.5 0.3 122 chr3R 12704831 3` UTR Past1 + chr3R 12704892 intergenic Past1 +,CG12279 + chr3R 12704953 intergenic Past1 +,CG12279 + chr3R_4_12700001 chr3R_12700001 RAL-359 1712 chr3R 12739018 12739068 chr3R 12739114 12739164 9 95 9.5 9.5 9.5 0.9 146 chr3R 12739018 intergenic not near genes chr3R 12739091 intergenic not near genes chr3R 12739164 intergenic CG5724 + chr3R_9_12735001 chr3R_12735001 RAL-359 1713 chr3R 12787933 12787955 chr3R 12788036 12788058 4 103 12.0 11.5 11.8 0.3 125 chr3R 12787933 intergenic not near genes chr3R 12787996 intergenic not near genes chr3R 12788058 intergenic not near genes chr3R_4_12785001 chr3R_12785001 RAL-359 1714 chr3R 12796458 12796501 chr3R 12796558 12796601 4 100 7.5 7.0 7.2 0.5 143 chr3R 12796458 intergenic not near genes chr3R 12796530 intergenic not near genes chr3R 12796601 intergenic not near genes chr3R_4_12795001 chr3R_12795001 RAL-359 1715 chr3R 12805836 12805884 chr3R 12805942 12805989 14 102 17.5 13.5 15.5 0.8 153 chr3R 12805836 intergenic not near genes chr3R 12805912 intergenic not near genes chr3R 12805989 intergenic not near genes chr3R_14_12805001 chr3R_12805001 RAL-359 1716 chr3R 12819008 12819045 chr3R 12819111 12819148 5 103 4.0 3.5 3.8 1.0 140 chr3R 12819008 intergenic not near genes chr3R 12819078 intergenic not near genes chr3R 12819148 intergenic not near genes chr3R_5_12815001 chr3R_12815001 RAL-359 1717 chr3R 12876942 12876984 chr3R 12877045 12877087 5 101 7.0 6.5 6.8 0.6 145 chr3R 12876942 intergenic not near genes chr3R 12877014 intergenic not near genes chr3R 12877087 intergenic not near genes chr3R_5_12875001 chr3R_12875001 RAL-359 1718 chr3R 12920139 12920183 chr3R 12925356 12925397 copia 7 5219 1.0 3.5 2.2 2.2 5258 chr3R 12920139 intron beat-Vb + chr3R 12922768 intron beat-Vb + chr3R 12925397 intron beat-Vb + chr3R_7_12920001 chr3R_12920001 RAL-359 1719 chr3R 12960532 12960575 chr3R 12960639 12960682 7 104 3.0 3.0 3.0 1.8 150 chr3R 12960532 intron grsm - chr3R 12960607 intron grsm - chr3R 12960682 intron grsm - chr3R_7_12960001 chr3R_12960001 RAL-359 1720 chr3R 13018126 13018173 chr3R 13018225 13018272 9 97 1.5 4.0 2.8 2.4 146 chr3R 13018126 intron CtBP + chr3R 13018199 intron CtBP + chr3R 13018272 intron CtBP + chr3R_9_13015001 chr3R_13015001 RAL-359 1721 chr3R 13059946 13059970 chr3R 13060161 13060185 10 215 2.0 2.5 2.2 3.1 239 chr3R 13059946 intron sim + chr3R 13060066 intron sim + chr3R 13060185 intron sim + chr3R_10_13060001 chr3R_13060001 RAL-359 1722 chr3R 13066984 13067004 chr3R 13067091 13067111 5 107 4.5 3.5 4.0 1.0 127 chr3R 13066984 intron sim + chr3R 13067048 intron sim + chr3R 13067111 intron sim + chr3R_5_13065001 chr3R_13065001 RAL-359 1723 chr3R 13073956 13073996 chr3R 13074055 13074063 7 94 2.0 0.5 1.2 3.2 107 chr3R 13073956 intron sim + chr3R 13074010 intron sim + chr3R 13074063 intron sim + chr3R_7_13070001 chr3R_13070001 RAL-359 1724 chr3R 13075338 13075366 chr3R 13075439 13075467 4 101 3.0 3.5 3.2 1.0 129 chr3R 13075338 intron sim + chr3R 13075402 intron sim + chr3R 13075467 intron sim + chr3R_4_13075001 chr3R_13075001 RAL-359 1725 chr3R 13114386 13114409 chr3R 13114496 13114522 6 111 7.5 3.5 5.5 0.9 136 chr3R 13114386 intron timeout + chr3R 13114454 intron timeout + chr3R 13114522 intron timeout + chr3R_6_13110001 chr3R_13110001 RAL-359 1726 chr3R 13135818 13135832 chr3R 13138003 13138017 pogo 5 2185 3.5 2.5 3.0 1.2 2199 chr3R 13135818 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13136918 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13138017 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_5_13135001 chr3R_13135001 RAL-359 1727 chr3R 13143026 13143066 chr3R 13148622 13148662 mdg3 9 5592 0.5 4.0 2.2 2.8 5636 chr3R 13143026 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13145844 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13148662 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_9_13145001 chr3R_13145001 RAL-359 1728 chr3R 13171904 13171921 chr3R 13172795 13172846 15 897 27.5 31.0 29.2 0.5 942 chr3R 13171904 intergenic not near genes chr3R 13172375 intergenic not near genes chr3R 13172846 intergenic not near genes chr3R_15_13170001 chr3R_13170001 RAL-359 1729 chr3R 13173429 13173471 chr3R 13173531 13173573 7 98 1.5 2.0 1.8 2.5 144 chr3R 13173429 intergenic not near genes chr3R 13173501 intergenic not near genes chr3R 13173573 intergenic not near genes chr3R_7_13170001 chr3R_13170001 RAL-359 1730 chr3R 13195937 13195982 chr3R 13196046 13196097 15 110 2.5 1.5 2.0 5.0 160 chr3R 13195937 intergenic not near genes chr3R 13196017 intergenic not near genes chr3R 13196097 intergenic not near genes chr3R_15_13195001 chr3R_13195001 RAL-359 1731 chr3R 13248633 13248680 chr3R 13248752 13248799 20 119 6.0 3.5 4.8 3.4 166 chr3R 13248633 intron Ace - chr3R 13248716 intron Ace - chr3R 13248799 intron Ace - chr3R_20_13245001 chr3R_13245001 RAL-359 1732 chr3R 13260707 13260747 chr3R 13260858 13260897 18 148 5.5 5.5 5.5 2.8 190 chr3R 13260707 intron CG11686 + chr3R 13260802 intron CG11686 + chr3R 13260897 intron CG11686 + chr3R_18_13260001 chr3R_13260001 RAL-359 1733 chr3R 13272040 13272078 chr3R 13272145 13272167 6 102 1.0 0.5 0.8 3.3 127 chr3R 13272040 intergenic CG8449 - chr3R 13272104 intergenic CG8449 - chr3R 13272167 intergenic CG8449 - chr3R_6_13270001 chr3R_13270001 RAL-359 1734 chr3R 13274192 13274247 chr3R 13274291 13274346 13 98 8.5 5.5 7.0 1.6 154 chr3R 13274192 intergenic not near genes chr3R 13274269 intergenic not near genes chr3R 13274346 intergenic not near genes chr3R_13_13270001 chr3R_13270001 RAL-359 1735 chr3R 13305639 13305691 chr3R 13305746 13305798 17 107 5.0 4.5 4.8 2.9 159 chr3R 13305639 intron CG32473 + chr3R 13305718 intron CG32473 + chr3R 13305798 intron CG32473 + chr3R_17_13305001 chr3R_13305001 RAL-359 1736 chr3R 13306102 13306147 chr3R 13306509 13306544 5 403 2.5 3.0 2.8 1.3 442 chr3R 13306102 intron CG32473 + chr3R 13306323 intron CG32473 + chr3R 13306544 intron CG32473 + chr3R_5_13305001 chr3R_13305001 RAL-359 1737 chr3R 13314098 13314104 chr3R 13318906 13318912 Doc 4 4808 6.5 5.0 5.8 0.6 4814 chr3R 13314098 intergenic not near genes chr3R 13316505 intergenic not near genes chr3R 13318912 intergenic CG45080 - chr3R_4_13315001 chr3R_13315001 RAL-359 1738 chr3R 13323936 13323981 chr3R 13324067 13324095 10 128 1.5 3.0 2.2 3.1 159 chr3R 13323936 intergenic not near genes chr3R 13324016 intergenic not near genes chr3R 13324095 intergenic not near genes chr3R_10_13320001 chr3R_13320001 RAL-359 1739 chr3R 13326920 13326959 chr3R 13327034 13327066 8 112 6.0 1.0 3.5 1.8 146 chr3R 13326920 intergenic not near genes chr3R 13326993 intergenic not near genes chr3R 13327066 intergenic not near genes chr3R_8_13325001 chr3R_13325001 RAL-359 1740 chr3R 13356069 13356117 chr3R 13356174 13356222 9 104 3.5 2.0 2.8 2.4 153 chr3R 13356069 intergenic not near genes chr3R 13356146 intergenic not near genes chr3R 13356222 intergenic not near genes chr3R_9_13355001 chr3R_13355001 RAL-359 1741 chr3R 13391624 13391664 chr3R 13391722 13391762 13 98 6.0 4.5 5.2 2.1 138 chr3R 13391624 intron CCHa2 - chr3R 13391693 intron CCHa2 - chr3R 13391762 intron CCHa2 - chr3R_13_13390001 chr3R_13390001 RAL-359 1742 chr3R 13496611 13496660 chr3R 13496710 13496759 11 99 4.0 2.0 3.0 2.8 148 chr3R 13496611 intergenic not near genes chr3R 13496685 intergenic not near genes chr3R 13496759 intergenic not near genes chr3R_11_13495001 chr3R_13495001 RAL-359 1743 chr3R 13517207 13517252 chr3R 13520044 13520089 jockey 7 2837 2.0 0.0 1.0 3.5 2882 chr3R 13517207 intergenic not near genes chr3R 13518648 intergenic not near genes chr3R 13520089 intergenic not near genes chr3R_7_13515001 chr3R_13515001 RAL-359 1744 chr3R 13526684 13526701 chr3R 13526783 13526800 6 99 4.5 2.0 3.2 1.4 116 chr3R 13526684 intergenic not near genes chr3R 13526742 intergenic not near genes chr3R 13526800 intergenic not near genes chr3R_6_13525001 chr3R_13525001 RAL-359 1745 chr3R 13554128 13554163 chr3R 13554224 13554232 9 91 5.5 5.0 5.2 1.5 104 chr3R 13554128 intergenic not near genes chr3R 13554180 intergenic not near genes chr3R 13554232 intergenic not near genes chr3R_9_13550001 chr3R_13550001 RAL-359 1746 chr3R 13603044 13603074 chr3R 13603155 13603185 4 111 3.0 5.5 4.2 0.8 141 chr3R 13603044 intergenic not near genes chr3R 13603114 intergenic not near genes chr3R 13603185 intergenic not near genes chr3R_4_13600001 chr3R_13600001 RAL-359 1747 chr3R 13782036 13782068 chr3R 13782132 13782169 5 100 4.0 2.5 3.2 1.2 133 chr3R 13782036 exon CG9286 + chr3R 13782102 intergenic CG9286 +,Dip-B + chr3R 13782169 intergenic CG9286 +,Dip-B + chr3R_5_13780001 chr3R_13780001 RAL-359 1748 chr3R 13863661 13863713 chr3R 13863769 13863820 10 101 3.0 3.0 3.0 2.5 159 chr3R 13863661 intergenic not near genes chr3R 13863740 intergenic not near genes chr3R 13863820 intergenic not near genes chr3R_10_13860001 chr3R_13860001 RAL-359 1749 chr3R 13893770 13893780 chr3R 13894021 13894036 4 255 5.5 7.5 6.5 0.5 266 chr3R 13893770 intergenic not near genes chr3R 13893903 intergenic not near genes chr3R 13894036 intergenic not near genes chr3R_4_13890001 chr3R_13890001 RAL-359 1750 chr3R 13975355 13975405 chr3R 13975455 13975505 16 97 3.0 4.5 3.8 3.3 150 chr3R 13975355 intron rdx - chr3R 13975430 intron rdx - chr3R 13975505 intron rdx - chr3R_16_13975001 chr3R_13975001 RAL-359 1751 chr3R 14021630 14021680 chr3R 14023467 14023517 S-element 20 1837 5.5 6.0 5.8 2.9 1887 chr3R 14021630 intron rdx - chr3R 14022574 intron rdx - chr3R 14023517 intron rdx - chr3R_20_14020001 chr3R_14020001 RAL-359 1752 chr3R 14109063 14109110 chr3R 14109164 14109201 13 98 3.0 2.5 2.8 3.4 138 chr3R 14109063 intergenic CR44237 -,Or88a + chr3R 14109132 intergenic CR44237 -,Or88a + chr3R 14109201 intergenic CR44237 -,Or88a + chr3R_13_14105001 chr3R_14105001 RAL-359 1753 chr3R 14117429 14117465 chr3R 14117524 14117561 17 96 7.5 6.0 6.8 2.2 132 chr3R 14117429 intron Kif19A - chr3R 14117495 intron Kif19A - chr3R 14117561 intron Kif19A - chr3R_17_14115001 chr3R_14115001 RAL-359 1754 chr3R 14174941 14174965 chr3R 14175048 14175071 6 104 4.5 3.5 4.0 1.2 130 chr3R 14174941 3` UTR Dop1R1 - chr3R 14175006 3` UTR Dop1R1 - chr3R 14175071 3` UTR Dop1R1 - chr3R_6_14175001 chr3R_14175001 RAL-359 1755 chr3R 14174974 14174992 chr3R 14175043 14175099 5 97 2.0 3.0 2.5 1.4 125 chr3R 14174974 3` UTR Dop1R1 - chr3R 14175036 3` UTR Dop1R1 - chr3R 14175099 3` UTR Dop1R1 - chr3R_5_14175001 chr3R_14175001 RAL-359 1756 chr3R 14180806 14180835 chr3R 14185581 14185620 F-element 8 4784 3.5 5.0 4.2 1.5 4814 chr3R 14180806 intron Dop1R1 - chr3R 14183213 intron Dop1R1 - chr3R 14185620 intron Dop1R1 - chr3R_8_14180001 chr3R_14180001 RAL-359 1757 chr3R 14194442 14194458 chr3R 14203596 14203612 roo 4 9154 6.0 3.5 4.8 0.7 9170 chr3R 14194442 intron Dop1R1 - chr3R 14199027 intron Dop1R1 - chr3R 14203612 intron Dop1R1 - chr3R_4_14195001 chr3R_14195001 RAL-359 1758 chr3R 14319041 14319086 chr3R 14319143 14319178 13 101 4.5 1.5 3.0 3.2 137 chr3R 14319041 3` UTR pr-set7 + chr3R 14319110 3` UTR pr-set7 + chr3R 14319178 3` UTR pr-set7 + chr3R_13_14315001 chr3R_14315001 RAL-359 1759 chr3R 14364043 14364088 chr3R 14364139 14364164 10 85 3.0 1.0 2.0 3.3 121 chr3R 14364043 intron NK7.1 - chr3R 14364104 intron NK7.1 - chr3R 14364164 intron NK7.1 - chr3R_10_14360001 chr3R_14360001 RAL-359 1760 chr3R 14526328 14526361 chr3R 14526528 14526561 10 199 1.5 6.5 4.0 2.0 233 chr3R 14526328 intron Pde6 - chr3R 14526444 intron Pde6 - chr3R 14526561 intron Pde6 - chr3R_10_14525001 chr3R_14525001 RAL-359 1761 chr3R 14533583 14533592 chr3R 14533691 14533700 5 108 0.0 6.5 3.2 1.2 117 chr3R 14533583 intron Pde6 - chr3R 14533642 intron Pde6 - chr3R 14533700 intron Pde6 - chr3R_5_14530001 chr3R_14530001 RAL-359 1762 chr3R 14546050 14546072 chr3R 14546147 14546169 6 95 5.0 2.5 3.8 1.2 119 chr3R 14546050 intron Pde6 - chr3R 14546110 intron Pde6 - chr3R 14546169 intron Pde6 - chr3R_6_14545001 chr3R_14545001 RAL-359 1763 chr3R 14608452 14608460 chr3R 14608564 14608572 6 112 2.0 5.0 3.5 1.3 120 chr3R 14608452 intergenic stumps + chr3R 14608512 intergenic stumps + chr3R 14608572 intergenic stumps + chr3R_6_14605001 chr3R_14605001 RAL-359 1764 chr3R 14631240 14631285 chr3R 14631338 14631383 6 98 5.0 3.0 4.0 1.2 143 chr3R 14631240 intron,intron CG7886 -,Cad88C + chr3R 14631312 intron,intron CG7886 -,Cad88C + chr3R 14631383 intron,intron CG7886 -,Cad88C + chr3R_6_14630001 chr3R_14630001 RAL-359 1765 chr3R 14662304 14662339 chr3R 14662395 14662439 11 99 1.0 2.0 1.5 4.4 135 chr3R 14662304 exon Rad17 - chr3R 14662372 intron Rad17 - chr3R 14662439 exon Rad17 - chr3R_11_14660001 chr3R_14660001 RAL-359 1766 chr3R 14832241 14832276 chr3R 14832409 14832442 4 156 2.5 4.5 3.5 0.9 201 chr3R 14832241 intron btsz - chr3R 14832342 intron btsz - chr3R 14832442 intron btsz - chr3R_4_14830001 chr3R_14830001 RAL-359 1767 chr3R 14876414 14876437 chr3R 14876519 14876542 5 102 3.5 3.5 3.5 1.1 128 chr3R 14876414 intergenic not near genes chr3R 14876478 intergenic not near genes chr3R 14876542 intergenic not near genes chr3R_5_14875001 chr3R_14875001 RAL-359 1768 chr3R 14881511 14881762 chr3R 14881594 14881885 4 112 22.0 19.0 20.5 0.2 374 chr3R 14881511 exon CG3631 + chr3R 14881698 exon CG3631 + chr3R 14881885 exon CG3631 + chr3R_4_14880001 chr3R_14880001 RAL-359 1769 chr3R 14975202 14975224 chr3R 14975269 14975301 5 88 2.5 2.5 2.5 1.4 99 chr3R 14975202 intergenic not near genes chr3R 14975252 intergenic not near genes chr3R 14975301 intergenic not near genes chr3R_5_14975001 chr3R_14975001 RAL-359 1770 chr3R 15002357 15002376 chr3R 15002476 15002495 5 119 7.5 3.5 5.5 0.8 138 chr3R 15002357 intergenic not near genes chr3R 15002426 intergenic not near genes chr3R 15002495 intergenic not near genes chr3R_5_15000001 chr3R_15000001 RAL-359 1771 chr3R 15020013 15020056 chr3R 15020113 15020156 10 100 3.5 2.5 3.0 2.5 143 chr3R 15020013 intergenic not near genes chr3R 15020084 intergenic not near genes chr3R 15020156 intergenic not near genes chr3R_10_15020001 chr3R_15020001 RAL-359 1772 chr3R 15026310 15026343 chr3R 15026416 15026448 6 106 2.5 2.0 2.2 1.9 138 chr3R 15026310 intergenic not near genes chr3R 15026379 intergenic not near genes chr3R 15026448 intergenic not near genes chr3R_6_15025001 chr3R_15025001 RAL-359 1773 chr3R 15036253 15036286 chr3R 15036433 15036466 5 178 5.5 2.5 4.0 1.0 213 chr3R 15036253 intergenic not near genes chr3R 15036360 intergenic not near genes chr3R 15036466 intergenic not near genes chr3R_5_15035001 chr3R_15035001 RAL-359 1774 chr3R 15049440 15049486 chr3R 15049581 15049632 11 145 2.5 5.5 4.0 2.2 192 chr3R 15049440 intergenic not near genes chr3R 15049536 intergenic not near genes chr3R 15049632 intergenic not near genes chr3R_11_15045001 chr3R_15045001 RAL-359 1775 chr3R 15071175 15071218 chr3R 15071313 15071363 14 144 4.5 5.0 4.8 2.4 188 chr3R 15071175 intron dpr9 - chr3R 15071269 intron dpr9 - chr3R 15071363 intron dpr9 - chr3R_14_15070001 chr3R_15070001 RAL-359 1776 chr3R 15079794 15079837 chr3R 15080055 15080098 pogo 12 260 5.0 7.0 6.0 1.7 304 chr3R 15079794 3` UTR CG6966 - chr3R 15079946 3` UTR CG6966 - chr3R 15080098 3` UTR CG6966 - chr3R_12_15075001 chr3R_15075001 RAL-359 1777 chr3R 15102481 15102528 chr3R 15109756 15109803 412 12 7275 3.5 5.0 4.2 2.3 7322 chr3R 15102481 intron CG42788 - chr3R 15106142 intron CG42788 - chr3R 15109803 intron CG42788 - chr3R_12_15105001 chr3R_15105001 RAL-359 1778 chr3R 15114894 15114915 chr3R 15114991 15115012 6 97 7.0 3.5 5.2 1.0 118 chr3R 15114894 intron CG42788 - chr3R 15114953 intron CG42788 - chr3R 15115012 intron CG42788 - chr3R_6_15110001 chr3R_15110001 RAL-359 1779 chr3R 15127782 15127805 chr3R 15127882 15127905 10 100 0.0 2.0 1.0 5.0 123 chr3R 15127782 intron CG42788 - chr3R 15127844 intron CG42788 - chr3R 15127905 intron CG42788 - chr3R_10_15125001 chr3R_15125001 RAL-359 1780 chr3R 15132048 15132073 chr3R 15135128 15135153 Juan 7 3080 5.5 4.5 5.0 1.2 3105 chr3R 15132048 intergenic CG42788 - chr3R 15133600 intergenic not near genes chr3R 15135153 3` UTR CG6912 - chr3R_7_15130001 chr3R_15130001 RAL-359 1781 chr3R 15156195 15156242 chr3R 15156362 15156409 8 165 2.5 0.0 1.2 3.6 214 chr3R 15156195 intron Gyc88E + chr3R 15156302 intron Gyc88E + chr3R 15156409 intron Gyc88E + chr3R_8_15155001 chr3R_15155001 RAL-359 1782 chr3R 15160549 15160593 chr3R 15160667 15160711 13 118 3.5 4.0 3.8 2.7 162 chr3R 15160549 intron Gyc88E + chr3R 15160630 intron Gyc88E + chr3R 15160711 intron Gyc88E + chr3R_13_15160001 chr3R_15160001 RAL-359 1783 chr3R 15162529 15162571 chr3R 15167316 15167358 F-element 13 4787 8.5 6.5 7.5 1.5 4829 chr3R 15162529 intron Gyc88E + chr3R 15164944 intron Gyc88E + chr3R 15167358 intron Gyc88E + chr3R_13_15160001 chr3R_15160001 RAL-359 1784 chr3R 15180885 15180907 chr3R 15180991 15181013 4 106 7.0 0.0 3.5 0.9 128 chr3R 15180885 intron Gyc88E + chr3R 15180949 intron Gyc88E + chr3R 15181013 intron Gyc88E + chr3R_4_15180001 chr3R_15180001 RAL-359 1785 chr3R 15184525 15184570 chr3R 15184616 15184656 16 93 6.0 5.0 5.5 2.5 131 chr3R 15184525 intron Gyc88E + chr3R 15184590 intron Gyc88E + chr3R 15184656 intron Gyc88E + chr3R_16_15180001 chr3R_15180001 RAL-359 1786 chr3R 15246904 15246949 chr3R 15247108 15247153 13 204 3.5 2.0 2.8 3.4 249 chr3R 15246904 intergenic CG6499 -,Hsc70-4 + chr3R 15247028 intergenic CG6499 -,Hsc70-4 + chr3R 15247153 intergenic CG6499 - chr3R_13_15245001 chr3R_15245001 RAL-359 1787 chr3R 15406126 15406167 chr3R 15406226 15406268 18 99 3.5 0.0 1.8 6.4 142 chr3R 15406126 intron CG6125 - chr3R 15406197 intron CG6125 - chr3R 15406268 intron CG6125 - chr3R_18_15405001 chr3R_15405001 RAL-359 1788 chr3R 15571221 15571495 chr3R 15571348 15571606 15 116 5.0 2.5 3.8 3.1 385 chr3R 15571221 intergenic not near genes chr3R 15571414 intergenic not near genes chr3R 15571606 intergenic not near genes chr3R_15_15570001 chr3R_15570001 RAL-359 1789 chr3R 15601165 15601175 chr3R 15608704 15608713 412 4 7538 6.5 3.5 5.0 0.7 7548 chr3R 15601165 intergenic not near genes chr3R 15604939 intergenic not near genes chr3R 15608713 intergenic not near genes chr3R_4_15600001 chr3R_15600001 RAL-359 1790 chr3R 15639323 15639366 chr3R 15639628 15639672 8 304 1.5 3.5 2.5 2.3 349 chr3R 15639323 intergenic not near genes chr3R 15639498 intergenic not near genes chr3R 15639672 intergenic not near genes chr3R_8_15635001 chr3R_15635001 RAL-359 1791 chr3R 15734174 15734210 chr3R 15734262 15734263 6 93 2.0 2.5 2.2 1.9 89 chr3R 15734174 intergenic not near genes chr3R 15734218 intergenic not near genes chr3R 15734263 intergenic not near genes chr3R_6_15730001 chr3R_15730001 RAL-359 1792 chr3R 15745999 15746054 chr3R 15746160 15746215 6 161 3.0 3.0 3.0 1.5 216 chr3R 15745999 3` UTR CG4520 + chr3R 15746107 3` UTR CG4520 + chr3R 15746215 3` UTR CG4520 + chr3R_6_15745001 chr3R_15745001 RAL-359 1793 chr3R 16033404 16033439 chr3R 16033505 16033540 7 101 4.5 5.0 4.8 1.2 136 chr3R 16033404 intron pnr + chr3R 16033472 intron pnr + chr3R 16033540 intron pnr + chr3R_7_16030001 chr3R_16030001 RAL-359 1794 chr3R 16105624 16105663 chr3R 16105764 16105803 8 140 4.0 4.0 4.0 1.6 179 chr3R 16105624 3` UTR Akt1 + chr3R 16105714 intergenic Akt1 + chr3R 16105803 intergenic Akt1 + chr3R_8_16105001 chr3R_16105001 RAL-359 1795 chr3R 16111683 16111703 chr3R 16111984 16112004 7 301 6.0 3.5 4.8 1.2 321 chr3R 16111683 intergenic not near genes chr3R 16111844 intergenic not near genes chr3R 16112004 intergenic not near genes chr3R_7_16110001 chr3R_16110001 RAL-359 1796 chr3R 16215104 16215128 chr3R 16215224 16215253 6 124 3.5 9.0 6.2 0.8 149 chr3R 16215104 intergenic CR45641 + chr3R 16215178 intergenic CR45641 + chr3R 16215253 intergenic CR45641 + chr3R_6_16215001 chr3R_16215001 RAL-359 1797 chr3R 16253515 16253561 chr3R 16253621 16253666 8 105 1.0 1.5 1.2 3.6 151 chr3R 16253515 intron tara + chr3R 16253590 intron tara + chr3R 16253666 intron tara + chr3R_8_16250001 chr3R_16250001 RAL-359 1798 chr3R 16340337 16340387 chr3R 16340448 16340498 16 109 4.0 2.5 3.2 3.8 161 chr3R 16340337 3` UTR SF2 - chr3R 16340418 3` UTR SF2 - chr3R 16340498 3` UTR SF2 - chr3R_16_16340001 chr3R_16340001 RAL-359 1799 chr3R 16472573 16472597 chr3R 16472656 16472666 5 75 10.5 7.0 8.8 0.5 93 chr3R 16472573 intergenic Gyc-89Da + chr3R 16472620 5` UTR Gyc-89Da + chr3R 16472666 5` UTR Gyc-89Da + chr3R_5_16470001 chr3R_16470001 RAL-359 1800 chr3R 16518493 16518527 chr3R 16518582 16518627 6 88 1.0 3.5 2.2 1.9 134 chr3R 16518493 intron CG42342 + chr3R 16518560 intron CG42342 + chr3R 16518627 intron CG42342 + chr3R_6_16515001 chr3R_16515001 RAL-359 1801 chr3R 16580959 16580978 chr3R 16581059 16581093 4 104 2.5 4.5 3.5 0.9 134 chr3R 16580959 intron Scp2 - chr3R 16581026 intron Scp2 - chr3R 16581093 intron Scp2 - chr3R_4_16580001 chr3R_16580001 RAL-359 1802 chr3R 16582888 16582897 chr3R 16582987 16582992 4 98 2.5 4.5 3.5 0.9 104 chr3R 16582888 intron Scp2 - chr3R 16582940 intron Scp2 - chr3R 16582992 intron Scp2 - chr3R_4_16580001 chr3R_16580001 RAL-359 1803 chr3R 16671248 16671262 chr3R 16671347 16671349 4 96 4.0 3.0 3.5 0.9 101 chr3R 16671248 intron Ubx - chr3R 16671298 intron Ubx - chr3R 16671349 intron Ubx - chr3R_4_16670001 chr3R_16670001 RAL-359 1804 chr3R 16704571 16704611 chr3R 16704663 16704710 8 98 3.0 4.5 3.8 1.7 139 chr3R 16704571 intron Ubx - chr3R 16704640 intron Ubx - chr3R 16704710 intron Ubx - chr3R_8_16700001 chr3R_16700001 RAL-359 1805 chr3R 16708906 16708951 chr3R 16709010 16709055 8 100 3.5 1.5 2.5 2.3 149 chr3R 16708906 intron Ubx - chr3R 16708980 intron Ubx - chr3R 16709055 intron Ubx - chr3R_8_16705001 chr3R_16705001 RAL-359 1806 chr3R 16782029 16782042 chr3R 16782101 16782133 7 88 2.0 4.5 3.2 1.7 104 chr3R 16782029 intergenic not near genes chr3R 16782081 intergenic not near genes chr3R 16782133 intergenic not near genes chr3R_7_16780001 chr3R_16780001 RAL-359 1807 chr3R 16795272 16795322 chr3R 16795382 16795432 14 109 0.0 2.0 1.0 7.0 160 chr3R 16795272 intergenic not near genes chr3R 16795352 intergenic not near genes chr3R 16795432 intergenic not near genes chr3R_14_16795001 chr3R_16795001 RAL-359 1808 chr3R 16816310 16816338 chr3R 16816497 16816530 6 189 1.5 1.0 1.2 2.7 220 chr3R 16816310 intron abd-A - chr3R 16816420 intron abd-A - chr3R 16816530 intron abd-A - chr3R_6_16815001 chr3R_16815001 RAL-359 1809 chr3R 16820237 16820278 chr3R 16820351 16820392 7 114 2.5 3.5 3.0 1.8 155 chr3R 16820237 intron abd-A - chr3R 16820314 intron abd-A - chr3R 16820392 intron abd-A - chr3R_7_16820001 chr3R_16820001 RAL-359 1810 chr3R 16921807 16921855 chr3R 16921911 16921959 9 104 3.5 3.0 3.2 2.1 152 chr3R 16921807 intron iab-8 - chr3R 16921883 intron iab-8 - chr3R 16921959 intron iab-8 - chr3R_9_16920001 chr3R_16920001 RAL-359 1811 chr3R 16996284 16996331 chr3R 16996380 16996427 14 95 3.5 3.5 3.5 3.1 143 chr3R 16996284 intergenic CG3534 +,CG17556 - chr3R 16996356 intergenic CG3534 +,CG17556 - chr3R 16996427 intergenic CG3534 +,CG17556 - chr3R_14_16995001 chr3R_16995001 RAL-359 1812 chr3R 17181974 17181992 chr3R 17182383 17182402 5 408 8.5 7.5 8.0 0.6 428 chr3R 17181974 intron Mur89F - chr3R 17182188 intron Mur89F - chr3R 17182402 intron Mur89F - chr3R_5_17180001 chr3R_17180001 RAL-359 1813 chr3R 17181994 17182014 chr3R 17182376 17182422 7 401 5.5 6.0 5.8 1.0 428 chr3R 17181994 intron Mur89F - chr3R 17182208 intron Mur89F - chr3R 17182422 intron Mur89F - chr3R_7_17180001 chr3R_17180001 RAL-359 1814 chr3R 17294651 17294698 chr3R 17295099 17295151 BS 4 449 2.0 0.0 1.0 2.0 500 chr3R 17294651 intergenic not near genes chr3R 17294901 intergenic not near genes chr3R 17295151 intergenic not near genes chr3R_4_17290001 chr3R_17290001 RAL-359 1815 chr3R 17346674 17346715 chr3R 17348257 17348298 F-element 17 1583 4.5 6.0 5.2 2.7 1624 chr3R 17346674 intron beat-IIa - chr3R 17347486 intron beat-IIa - chr3R 17348298 intron beat-IIa - chr3R_17_17345001 chr3R_17345001 RAL-359 1816 chr3R 17354805 17354823 chr3R 17355044 17355062 4 239 3.5 4.0 3.8 0.8 257 chr3R 17354805 intron beat-IIa - chr3R 17354934 intron beat-IIa - chr3R 17355062 intron beat-IIa - chr3R_4_17350001 chr3R_17350001 RAL-359 1817 chr3R 17355480 17355524 chr3R 17355576 17355622 7 94 4.5 4.0 4.2 1.3 142 chr3R 17355480 intron beat-IIa - chr3R 17355551 intron beat-IIa - chr3R 17355622 intron beat-IIa - chr3R_7_17355001 chr3R_17355001 RAL-359 1818 chr3R 17469502 17469521 chr3R 17469622 17469635 6 118 2.0 2.0 2.0 2.0 133 chr3R 17469502 intergenic not near genes chr3R 17469568 intergenic not near genes chr3R 17469635 intergenic not near genes chr3R_6_17465001 chr3R_17465001 RAL-359 1819 chr3R 17497944 17497987 chr3R 17498049 17498093 12 106 1.5 4.5 3.0 3.0 149 chr3R 17497944 intron Dscam3 - chr3R 17498018 intron Dscam3 - chr3R 17498093 intron Dscam3 - chr3R_12_17495001 chr3R_17495001 RAL-359 1820 chr3R 17506366 17506391 chr3R 17506464 17506489 7 98 2.5 6.0 4.2 1.3 123 chr3R 17506366 intergenic not near genes chr3R 17506428 intergenic not near genes chr3R 17506489 intergenic not near genes chr3R_7_17505001 chr3R_17505001 RAL-359 1821 chr3R 17521572 17521589 chr3R 17521724 17521758 9 165 0.5 4.5 2.5 2.6 186 chr3R 17521572 intergenic not near genes chr3R 17521665 intergenic not near genes chr3R 17521758 intergenic not near genes chr3R_9_17520001 chr3R_17520001 RAL-359 1822 chr3R 17546065 17546100 chr3R 17546169 17546178 4 92 3.5 2.0 2.8 1.1 113 chr3R 17546065 intron Prx3 - chr3R 17546122 intron Prx3 - chr3R 17546178 intron Prx3 - chr3R_4_17545001 chr3R_17545001 RAL-359 1823 chr3R 17593027 17593043 chr3R 17593184 17593200 5 157 1.5 2.5 2.0 1.7 173 chr3R 17593027 intergenic not near genes chr3R 17593114 intergenic not near genes chr3R 17593200 intergenic not near genes chr3R_5_17590001 chr3R_17590001 RAL-359 1824 chr3R 17651864 17651911 chr3R 17651965 17652012 10 101 4.5 3.0 3.8 2.1 148 chr3R 17651864 intron CG14322 + chr3R 17651938 intron CG14322 + chr3R 17652012 intron CG14322 + chr3R_10_17650001 chr3R_17650001 RAL-359 1825 chr3R 17734125 17734137 chr3R 17734220 17734245 7 106 1.5 5.5 3.5 1.6 120 chr3R 17734125 3` UTR CG14321 + chr3R 17734185 3` UTR CG14321 + chr3R 17734245 3` UTR CG14321 + chr3R_7_17730001 chr3R_17730001 RAL-359 1826 chr3R 17812070 17812116 chr3R 17812166 17812212 5 94 5.0 0.0 2.5 1.4 142 chr3R 17812070 intron tinc + chr3R 17812141 intron tinc + chr3R 17812212 intron tinc + chr3R_5_17810001 chr3R_17810001 RAL-359 1827 chr3R 17823191 17823219 chr3R 17823296 17823324 9 105 4.0 8.0 6.0 1.3 133 chr3R 17823191 intron tinc + chr3R 17823258 intron tinc + chr3R 17823324 intron tinc + chr3R_9_17820001 chr3R_17820001 RAL-359 1828 chr3R 17845206 17845215 chr3R 17845267 17845312 7 88 3.0 5.5 4.2 1.3 106 chr3R 17845206 intron tinc + chr3R 17845259 intron tinc + chr3R 17845312 intron tinc + chr3R_7_17845001 chr3R_17845001 RAL-359 1829 chr3R 17858059 17858082 chr3R 17858171 17858187 4 110 1.5 7.5 4.5 0.7 128 chr3R 17858059 intron tinc + chr3R 17858123 intron tinc + chr3R 17858187 intron tinc + chr3R_4_17855001 chr3R_17855001 RAL-359 1830 chr3R 17925862 17925880 chr3R 17927330 17927354 hobo 9 1480 5.5 6.0 5.8 1.3 1492 chr3R 17925862 intron cpo + chr3R 17926608 intron cpo + chr3R 17927354 intron cpo + chr3R_9_17925001 chr3R_17925001 RAL-359 1831 chr3R 17976506 17976523 chr3R 17976603 17976620 4 97 3.5 4.0 3.8 0.8 114 chr3R 17976506 intron cpo + chr3R 17976563 intron cpo + chr3R 17976620 intron cpo + chr3R_4_17975001 chr3R_17975001 RAL-359 1832 chr3R 18133963 18133979 chr3R 18134081 18134096 6 118 1.0 6.0 3.5 1.3 133 chr3R 18133963 intergenic sr + chr3R 18134030 intergenic sr + chr3R 18134096 intergenic sr + chr3R_6_18130001 chr3R_18130001 RAL-359 1833 chr3R 18200798 18200814 chr3R 18200966 18201018 5 197 3.5 2.0 2.8 1.3 220 chr3R 18200798 intron CG7985 + chr3R 18200908 intron CG7985 + chr3R 18201018 intron CG7985 + chr3R_5_18200001 chr3R_18200001 RAL-359 1834 chr3R 18472271 18472292 chr3R 18472392 18472413 4 121 6.0 2.0 4.0 0.8 142 chr3R 18472271 intron fru - chr3R 18472342 intron fru - chr3R 18472413 intron fru - chr3R_4_18470001 chr3R_18470001 RAL-359 1835 chr3R 18474570 18474607 chr3R 18474893 18474930 8 323 3.0 5.5 4.2 1.5 360 chr3R 18474570 intron fru - chr3R 18474750 intron fru - chr3R 18474930 intron fru - chr3R_8_18470001 chr3R_18470001 RAL-359 1836 chr3R 18541516 18541547 chr3R 18541612 18541643 8 96 5.0 3.5 4.2 1.5 127 chr3R 18541516 intron fru - chr3R 18541580 intron fru - chr3R 18541643 intron fru - chr3R_8_18540001 chr3R_18540001 RAL-359 1837 chr3R 18567587 18567618 chr3R 18567699 18567730 5 112 0.5 1.5 1.0 2.5 143 chr3R 18567587 intergenic not near genes chr3R 18567658 intergenic not near genes chr3R 18567730 intergenic not near genes chr3R_5_18565001 chr3R_18565001 RAL-359 1838 chr3R 18617701 18617738 chr3R 18617801 18617838 7 100 3.0 1.5 2.2 2.2 137 chr3R 18617701 intron,intron qin +,CG14304 - chr3R 18617770 intron,intron qin +,CG14304 - chr3R 18617838 intron,intron qin +,CG14304 - chr3R_7_18615001 chr3R_18615001 RAL-359 1839 chr3R 18618245 18618295 chr3R 18618350 18618400 11 105 2.5 5.0 3.8 2.3 155 chr3R 18618245 intron,intron qin +,CG14304 - chr3R 18618322 intron,intron qin +,CG14304 - chr3R 18618400 intron,intron qin +,CG14304 - chr3R_11_18615001 chr3R_18615001 RAL-359 1840 chr3R 18622624 18622665 chr3R 18622730 18622761 8 102 2.5 3.5 3.0 2.0 137 chr3R 18622624 intron qin + chr3R 18622692 intron qin + chr3R 18622761 intron qin + chr3R_8_18620001 chr3R_18620001 RAL-359 1841 chr3R 18626847 18626882 chr3R 18627016 18627050 4 168 0.0 0.0 0.0 4.0 203 chr3R 18626847 intron qin + chr3R 18626948 intron qin + chr3R 18627050 intron qin + chr3R_4_18625001 chr3R_18625001 RAL-359 1842 chr3R 18781691 18781714 chr3R 18781787 18781810 4 96 6.0 6.5 6.2 0.6 119 chr3R 18781691 intron CG7720 - chr3R 18781750 intron CG7720 - chr3R 18781810 intron CG7720 - chr3R_4_18780001 chr3R_18780001 RAL-359 1843 chr3R 18782744 18782771 chr3R 18782858 18782885 14 113 4.5 7.0 5.8 2.1 141 chr3R 18782744 intron CG7720 - chr3R 18782814 intron CG7720 - chr3R 18782885 intron CG7720 - chr3R_14_18780001 chr3R_18780001 RAL-359 1844 chr3R 18785854 18785902 chr3R 18785951 18785999 9 94 4.0 3.5 3.8 1.9 145 chr3R 18785854 intron CG7720 - chr3R 18785926 intron CG7720 - chr3R 18785999 intron CG7720 - chr3R_9_18785001 chr3R_18785001 RAL-359 1845 chr3R 18812063 18812097 chr3R 18812160 18812195 13 97 5.0 4.5 4.8 2.2 132 chr3R 18812063 intron CG18208 - chr3R 18812129 intron CG18208 - chr3R 18812195 intron CG18208 - chr3R_13_18810001 chr3R_18810001 RAL-359 1846 chr3R 18855697 18855728 chr3R 18855809 18855840 4 112 2.0 0.0 1.0 2.0 143 chr3R 18855697 intergenic not near genes chr3R 18855768 intergenic not near genes chr3R 18855840 intergenic not near genes chr3R_4_18855001 chr3R_18855001 RAL-359 1847 chr3R 19136409 19136443 chr3R 19139775 19139809 Bari1 11 3370 53.0 37.5 45.2 0.2 3400 chr3R 19136409 exon Cyp12a4 + chr3R 19138109 intergenic not near genes chr3R 19139809 3` UTR Ppcs - chr3R_11_19135001 chr3R_19135001 RAL-359 1848 chr3R 19140248 19140281 chr3R 19140716 19140731 7 460 2.5 2.0 2.2 2.2 483 chr3R 19140248 3` UTR Ppcs - chr3R 19140490 3` UTR Ppcs - chr3R 19140731 3` UTR Ppcs - chr3R_7_19140001 chr3R_19140001 RAL-359 1849 chr3R 19223454 19223507 chr3R 19223567 19223610 9 104 2.5 0.0 1.2 4.1 156 chr3R 19223454 intron vib - chr3R 19223532 intron vib - chr3R 19223610 intron vib - chr3R_9_19220001 chr3R_19220001 RAL-359 1850 chr3R 19344662 19344699 chr3R 19344811 19344854 7 154 4.0 1.0 2.5 2.0 192 chr3R 19344662 intergenic not near genes chr3R 19344758 intergenic not near genes chr3R 19344854 intergenic not near genes chr3R_7_19340001 chr3R_19340001 RAL-359 1851 chr3R 19494392 19494409 chr3R 19494492 19494509 5 100 4.0 5.5 4.8 0.9 117 chr3R 19494392 intron Dys + chr3R 19494450 intron Dys + chr3R 19494509 intron Dys + chr3R_5_19490001 chr3R_19490001 RAL-359 1852 chr3R 19570290 19570340 chr3R 19570386 19570414 8 93 2.0 5.0 3.5 1.8 124 chr3R 19570290 intron Dys + chr3R 19570352 intron Dys + chr3R 19570414 intron Dys + chr3R_8_19570001 chr3R_19570001 RAL-359 1853 chr3R 19593489 19593515 chr3R 19593589 19593608 12 100 6.5 4.5 5.5 1.8 119 chr3R 19593489 intron Dys + chr3R 19593548 intron Dys + chr3R 19593608 intron Dys + chr3R_12_19590001 chr3R_19590001 RAL-359 1854 chr3R 19604667 19604709 chr3R 19604820 19604862 9 151 4.5 3.0 3.8 1.9 195 chr3R 19604667 exon CG7342 + chr3R 19604764 intron CG7342 + chr3R 19604862 intron CG7342 + chr3R_9_19600001 chr3R_19600001 RAL-359 1855 chr3R 19914004 19914038 chr3R 19914107 19914151 11 111 6.0 4.5 5.2 1.8 147 chr3R 19914004 3` UTR RhoGAP92B + chr3R 19914078 3` UTR RhoGAP92B + chr3R 19914151 3` UTR RhoGAP92B + chr3R_11_19910001 chr3R_19910001 RAL-359 1856 chr3R 19945952 19946003 chr3R 19946075 19946126 10 120 2.0 2.0 2.0 3.3 174 chr3R 19945952 intron Hs6st - chr3R 19946039 intron Hs6st - chr3R 19946126 intron Hs6st - chr3R_10_19945001 chr3R_19945001 RAL-359 1857 chr3R 19957268 19957290 chr3R 19957364 19957386 6 93 3.0 6.0 4.5 1.1 118 chr3R 19957268 intron Hs6st - chr3R 19957327 intron Hs6st - chr3R 19957386 intron Hs6st - chr3R_6_19955001 chr3R_19955001 RAL-359 1858 chr3R 19987431 19987471 chr3R 19987870 19987910 9 439 2.0 4.5 3.2 2.1 479 chr3R 19987431 intron Hs6st - chr3R 19987670 intron Hs6st - chr3R 19987910 intron Hs6st - chr3R_9_19985001 chr3R_19985001 RAL-359 1859 chr3R 20045708 20045711 chr3R 20045811 20045816 4 104 5.0 6.0 5.5 0.6 108 chr3R 20045708 intron,5` UTR,3` UTR CG17193 -,CG33934 +,Indy-2 + chr3R 20045762 intron,5` UTR,3` UTR CG17193 -,CG33934 +,Indy-2 + chr3R 20045816 intron,5` UTR,3` UTR CG17193 -,CG33934 +,Indy-2 + chr3R_4_20045001 chr3R_20045001 RAL-359 1860 chr3R 20060623 20060652 chr3R 20060726 20060755 5 102 3.5 1.5 2.5 1.4 132 chr3R 20060623 intergenic not near genes chr3R 20060689 intergenic not near genes chr3R 20060755 intergenic not near genes chr3R_5_20060001 chr3R_20060001 RAL-359 1861 chr3R 20078178 20078234 chr3R 20078337 20078385 13 150 2.0 0.5 1.2 5.9 207 chr3R 20078178 intergenic not near genes chr3R 20078282 intergenic not near genes chr3R 20078385 intergenic not near genes chr3R_13_20075001 chr3R_20075001 RAL-359 1862 chr3R 20109521 20109566 chr3R 20114747 20114787 copia 15 5225 2.5 6.5 4.5 2.7 5266 chr3R 20109521 intergenic not near genes chr3R 20112154 intergenic not near genes chr3R 20114787 intergenic CG10887 + chr3R_15_20110001 chr3R_20110001 RAL-359 1863 chr3R 20156677 20156718 chr3R 20165867 20165908 roo 10 9190 5.0 3.5 4.2 1.9 9231 chr3R 20156677 intergenic not near genes chr3R 20161292 intergenic not near genes chr3R 20165908 intergenic not near genes chr3R_10_20160001 chr3R_20160001 RAL-359 1864 chr3R 20205549 20205592 chr3R 20205691 20205734 15 142 2.5 6.5 4.5 2.7 185 chr3R 20205549 intron Nlg4 + chr3R 20205642 intron Nlg4 + chr3R 20205734 intron Nlg4 + chr3R_15_20205001 chr3R_20205001 RAL-359 1865 chr3R 20225414 20225439 chr3R 20225523 20225548 9 109 5.0 2.5 3.8 1.9 134 chr3R 20225414 intron Nlg4 + chr3R 20225481 intron Nlg4 + chr3R 20225548 intron Nlg4 + chr3R_9_20225001 chr3R_20225001 RAL-359 1866 chr3R 20245259 20245302 chr3R 20248889 20248932 F-element 7 3630 6.0 2.0 4.0 1.4 3673 chr3R 20245259 3` UTR Nlg4 + chr3R 20247096 intergenic not near genes chr3R 20248932 intergenic not near genes chr3R_7_20245001 chr3R_20245001 RAL-359 1867 chr3R 20266503 20266531 chr3R 20272994 20273022 Burdock 7 6491 0.0 3.0 1.5 2.8 6519 chr3R 20266503 intron cic + chr3R 20269762 intron cic + chr3R 20273022 intron cic + chr3R_7_20265001 chr3R_20265001 RAL-359 1868 chr3R 20282262 20282308 chr3R 20282358 20282404 9 96 2.0 4.0 3.0 2.2 142 chr3R 20282262 intron cic + chr3R 20282333 intron cic + chr3R 20282404 intron cic + chr3R_9_20280001 chr3R_20280001 RAL-359 1869 chr3R 20330983 20331031 chr3R 20331489 20331537 roo 11 506 3.5 4.0 3.8 2.3 554 chr3R 20330983 intergenic Sirt2 + chr3R 20331260 intergenic Sirt2 + chr3R 20331537 intergenic not near genes chr3R_11_20330001 chr3R_20330001 RAL-359 1870 chr3R 20434825 20434864 chr3R 20435030 20435069 5 205 1.5 2.5 2.0 1.7 244 chr3R 20434825 intron Gfrl - chr3R 20434947 intron Gfrl - chr3R 20435069 intron Gfrl - chr3R_5_20430001 chr3R_20430001 RAL-359 1871 chr3R 20499804 20499833 chr3R 20499897 20499932 8 98 7.0 6.5 6.8 1.0 128 chr3R 20499804 intergenic Dic2 - chr3R 20499868 intergenic Dic2 - chr3R 20499932 intergenic Dic2 - chr3R_8_20495001 chr3R_20495001 RAL-359 1872 chr3R 20512983 20513028 chr3R 20515706 20515751 opus 9 2723 2.0 3.5 2.8 2.4 2768 chr3R 20512983 intergenic not near genes chr3R 20514367 intergenic not near genes chr3R 20515751 intergenic not near genes chr3R_9_20510001 chr3R_20510001 RAL-359 1873 chr3R 20594461 20594507 chr3R 20594571 20594617 9 110 4.5 0.0 2.2 2.8 156 chr3R 20594461 intron bon + chr3R 20594539 intron bon + chr3R 20594617 intron bon + chr3R_9_20590001 chr3R_20590001 RAL-359 1874 chr3R 20596183 20596215 chr3R 20596290 20596322 6 107 3.0 3.0 3.0 1.5 139 chr3R 20596183 intron bon + chr3R 20596252 intron bon + chr3R 20596322 intron bon + chr3R_6_20595001 chr3R_20595001 RAL-359 1875 chr3R 20679193 20679204 chr3R 20679460 20679477 4 272 0.0 0.0 0.0 4.0 284 chr3R 20679193 intergenic CR43452 + chr3R 20679335 intergenic CR43452 + chr3R 20679477 intergenic CR43452 + chr3R_4_20675001 chr3R_20675001 RAL-359 1876 chr3R 20730935 20731061 chr3R 20731044 20731169 10 109 0.0 0.5 0.2 8.3 234 chr3R 20730935 intergenic not near genes chr3R 20731052 intergenic not near genes chr3R 20731169 intergenic CG31205 + chr3R_10_20730001 chr3R_20730001 RAL-359 1877 chr3R 20787421 20787452 chr3R 20787530 20787560 6 110 2.0 3.0 2.5 1.7 139 chr3R 20787421 intron Syp + chr3R 20787490 intron Syp + chr3R 20787560 intron Syp + chr3R_6_20785001 chr3R_20785001 RAL-359 1878 chr3R 20870229 20870284 chr3R 20870334 20870389 16 104 4.5 3.5 4.0 3.2 160 chr3R 20870229 intergenic not near genes chr3R 20870309 intergenic not near genes chr3R 20870389 intergenic not near genes chr3R_16_20870001 chr3R_20870001 RAL-359 1879 chr3R 20899899 20899938 chr3R 20900015 20900053 9 116 0.5 4.5 2.5 2.6 154 chr3R 20899899 intergenic not near genes chr3R 20899976 intergenic not near genes chr3R 20900053 intergenic not near genes chr3R_9_20895001 chr3R_20895001 RAL-359 1880 chr3R 20901647 20901676 chr3R 20901770 20901799 5 123 3.0 4.0 3.5 1.1 152 chr3R 20901647 intergenic CG5621 + chr3R 20901723 intergenic CG5621 + chr3R 20901799 intergenic CG5621 + chr3R_5_20900001 chr3R_20900001 RAL-359 1881 chr3R 21074806 21074826 chr3R 21075041 21075067 5 240 3.0 5.5 4.2 1.0 261 chr3R 21074806 intron dmrt93B + chr3R 21074936 intron dmrt93B + chr3R 21075067 intron dmrt93B + chr3R_5_21070001 chr3R_21070001 RAL-359 1882 chr3R 21154533 21154586 chr3R 21154758 21154821 8 234 5.0 0.0 2.5 2.3 288 chr3R 21154533 intron SNF4Agamma + chr3R 21154677 intron SNF4Agamma + chr3R 21154821 intron SNF4Agamma + chr3R_8_21150001 chr3R_21150001 RAL-359 1883 chr3R 21385919 21385962 chr3R 21386012 21386033 4 80 2.0 5.0 3.5 0.9 114 chr3R 21385919 intergenic not near genes chr3R 21385976 intergenic not near genes chr3R 21386033 intergenic not near genes chr3R_4_21385001 chr3R_21385001 RAL-359 1884 chr3R 21392461 21392510 chr3R 21392780 21392829 11 313 1.0 1.0 1.0 5.5 368 chr3R 21392461 intergenic not near genes chr3R 21392645 intergenic not near genes chr3R 21392829 intergenic not near genes chr3R_11_21390001 chr3R_21390001 RAL-359 1885 chr3R 21464387 21464401 chr3R 21464493 21464507 6 106 2.5 0.5 1.5 2.4 120 chr3R 21464387 intergenic not near genes chr3R 21464447 intergenic not near genes chr3R 21464507 intergenic not near genes chr3R_6_21460001 chr3R_21460001 RAL-359 1886 chr3R 21472010 21472027 chr3R 21472099 21472128 4 98 6.0 5.5 5.8 0.6 118 chr3R 21472010 intergenic not near genes chr3R 21472069 intergenic not near genes chr3R 21472128 intergenic not near genes chr3R_4_21470001 chr3R_21470001 RAL-359 1887 chr3R 21519969 21520109 chr3R 21520090 21520223 14 119 0.5 0.5 0.5 9.3 254 chr3R 21519969 intergenic not near genes chr3R 21520096 intergenic not near genes chr3R 21520223 intergenic not near genes chr3R_14_21520001 chr3R_21520001 RAL-359 1888 chr3R 21595658 21595664 chr3R 21595913 21595926 4 258 6.5 2.0 4.2 0.8 268 chr3R 21595658 intron InR - chr3R 21595792 intron InR - chr3R 21595926 intron InR - chr3R_4_21595001 chr3R_21595001 RAL-359 1889 chr3R 21651237 21651270 chr3R 21651335 21651368 7 98 1.0 4.5 2.8 1.8 131 chr3R 21651237 intron E2f - chr3R 21651302 intron E2f - chr3R 21651368 intron E2f - chr3R_7_21650001 chr3R_21650001 RAL-359 1890 chr3R 21725668 21725686 chr3R 21725824 21725842 5 156 0.0 6.0 3.0 1.2 174 chr3R 21725668 intergenic not near genes chr3R 21725755 intergenic not near genes chr3R 21725842 intergenic not near genes chr3R_5_21725001 chr3R_21725001 RAL-359 1891 chr3R 21734845 21734955 chr3R 21734940 21735064 5 101 0.5 0.5 0.5 3.3 219 chr3R 21734845 intergenic not near genes chr3R 21734954 intergenic not near genes chr3R 21735064 intergenic not near genes chr3R_5_21730001 chr3R_21730001 RAL-359 1892 chr3R 21761107 21761147 chr3R 21768519 21768559 mdg1 12 7410 1.5 6.5 4.0 2.4 7452 chr3R 21761107 exon CG42335 + chr3R 21764833 intron CG42335 + chr3R 21768559 exon CG42335 + chr3R_12_21760001 chr3R_21760001 RAL-359 1893 chr3R 21784847 21784865 chr3R 21784965 21784983 5 118 8.0 0.0 4.0 1.0 136 chr3R 21784847 3` UTR,3` UTR CASK -,CRG - chr3R 21784915 3` UTR,3` UTR CASK -,CRG - chr3R 21784983 3` UTR,3` UTR CASK -,CRG - chr3R_5_21780001 chr3R_21780001 RAL-359 1894 chr3R 21832761 21832807 chr3R 21832878 21832880 5 93 3.5 2.5 3.0 1.2 119 chr3R 21832761 exon Gr93a + chr3R 21832820 exon Gr93a + chr3R 21832880 exon Gr93a + chr3R_5_21830001 chr3R_21830001 RAL-359 1895 chr3R 21897670 21897702 chr3R 21897768 21897801 5 99 3.0 3.0 3.0 1.2 131 chr3R 21897670 intron CG6678 + chr3R 21897736 intron CG6678 + chr3R 21897801 intron CG6678 + chr3R_5_21895001 chr3R_21895001 RAL-359 1896 chr3R 8339246 8339247 chr3R 21907534 21907534 6 13568288 18.5 17.5 18.0 0.3 13568288 chr3R 8339246 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907534 intergenic CG6678 + chr3R_6_15120001 chr3R_15120001 RAL-359 1897 chr3R 21907534 21907534 chr3R 28831801 28831802 7 6924267 16.5 13.5 15.0 0.4 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_7_25365001 chr3R_25365001 RAL-359 1898 chr3R 21907535 21907535 chr3R 28831801 28831801 6 6924266 15.5 13.5 14.5 0.4 6924266 chr3R 21907535 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831801 intron WASp - chr3R_6_25365001 chr3R_25365001 RAL-359 1899 chr3R 21907536 21907536 chr3R 28831801 28831802 13 6924265 15.5 13.5 14.5 0.8 6924266 chr3R 21907536 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831802 intron WASp - chr3R_13_25365001 chr3R_25365001 RAL-359 1900 chr3R 21937218 21937234 chr3R 21937306 21937330 5 95 1.5 4.5 3.0 1.2 112 chr3R 21937218 intergenic not near genes chr3R 21937274 intergenic not near genes chr3R 21937330 intergenic not near genes chr3R_5_21935001 chr3R_21935001 RAL-359 1901 chr3R 22064395 22064423 chr3R 22064797 22064823 7 402 9.5 5.5 7.5 0.8 428 chr3R 22064395 intron how + chr3R 22064609 intron how + chr3R 22064823 intron how + chr3R_7_22060001 chr3R_22060001 RAL-359 1902 chr3R 22234663 22234715 chr3R 22236002 22236054 pogo 13 1337 7.0 7.0 7.0 1.6 1391 chr3R 22234663 intron SKIP + chr3R 22235358 intron SKIP + chr3R 22236054 intron SKIP + chr3R_13_22235001 chr3R_22235001 RAL-359 1903 chr3R 22239471 22239525 chr3R 22248551 22248593 roo 9 9072 2.0 0.0 1.0 4.5 9122 chr3R 22239471 intron SKIP + chr3R 22244032 intron SKIP + chr3R 22248593 intron SKIP + chr3R_9_22240001 chr3R_22240001 RAL-359 1904 chr3R 22428564 22428586 chr3R 22428659 22428665 6 92 4.5 5.0 4.8 1.0 101 chr3R 22428564 intron CG13847 - chr3R 22428614 intron CG13847 - chr3R 22428665 intron CG13847 - chr3R_6_22425001 chr3R_22425001 RAL-359 1905 chr3R 22428589 22428609 chr3R 22428652 22428690 4 77 3.5 4.5 4.0 0.8 101 chr3R 22428589 intron CG13847 - chr3R 22428640 intron CG13847 - chr3R 22428690 intron CG13847 - chr3R_4_22425001 chr3R_22425001 RAL-359 1906 chr3R 22464931 22464975 chr3R 22465031 22465075 7 100 7.5 6.0 6.8 0.9 144 chr3R 22464931 intergenic CG7054 +,AP-2mu + chr3R 22465003 5` UTR CG7054 + chr3R 22465075 5` UTR CG7054 + chr3R_7_22465001 chr3R_22465001 RAL-359 1907 chr3R 22538426 22538461 chr3R 22538531 22538566 4 105 12.0 15.0 13.5 0.3 140 chr3R 22538426 intron CG5326 - chr3R 22538496 intron CG5326 - chr3R 22538566 intron CG5326 - chr3R_4_22535001 chr3R_22535001 RAL-359 1908 chr3R 22597359 22597371 chr3R 22597456 22597468 4 97 2.5 2.0 2.2 1.2 109 chr3R 22597359 intron Efa6 + chr3R 22597414 intron Efa6 + chr3R 22597468 intron Efa6 + chr3R_4_22595001 chr3R_22595001 RAL-359 1909 chr3R 22648311 22648347 chr3R 22648410 22648446 6 99 9.0 5.0 7.0 0.8 135 chr3R 22648311 intron wake + chr3R 22648378 intron wake + chr3R 22648446 intron wake + chr3R_6_22645001 chr3R_22645001 RAL-359 1910 chr3R 22650482 22650512 chr3R 22650582 22650608 6 98 13.5 7.5 10.5 0.5 126 chr3R 22650482 intron wake + chr3R 22650545 intron wake + chr3R 22650608 intron wake + chr3R_6_22650001 chr3R_22650001 RAL-359 1911 chr3R 22661277 22661315 chr3R 22661369 22661378 5 88 5.5 6.0 5.8 0.7 101 chr3R 22661277 intron wake + chr3R 22661328 intron wake + chr3R 22661378 intron wake + chr3R_5_22660001 chr3R_22660001 RAL-359 1912 chr3R 22672285 22672316 chr3R 22672398 22672429 4 113 9.0 6.5 7.8 0.5 144 chr3R 22672285 intron wake + chr3R 22672357 intron wake + chr3R 22672429 intron wake + chr3R_4_22670001 chr3R_22670001 RAL-359 1913 chr3R 22797758 22797933 chr3R 22797864 22798048 4 106 0.0 0.0 0.0 4.0 290 chr3R 22797758 intergenic not near genes chr3R 22797903 intergenic not near genes chr3R 22798048 intergenic not near genes chr3R_4_22795001 chr3R_22795001 RAL-359 1914 chr3R 22827982 22828024 chr3R 22828097 22828139 10 111 5.0 8.5 6.8 1.3 157 chr3R 22827982 intergenic not near genes chr3R 22828060 intergenic not near genes chr3R 22828139 intergenic not near genes chr3R_10_22825001 chr3R_22825001 RAL-359 1915 chr3R 22853279 22853297 chr3R 22853373 22853373 5 91 8.0 10.0 9.0 0.5 94 chr3R 22853279 intergenic not near genes chr3R 22853326 intergenic not near genes chr3R 22853373 intergenic not near genes chr3R_5_22850001 chr3R_22850001 RAL-359 1916 chr3R 22887189 22887199 chr3R 22887261 22887297 4 85 1.0 4.0 2.5 1.1 108 chr3R 22887189 intergenic not near genes chr3R 22887243 intergenic not near genes chr3R 22887297 intergenic not near genes chr3R_4_22885001 chr3R_22885001 RAL-359 1917 chr3R 22913909 22913942 chr3R 22913994 22914036 5 87 0.0 1.0 0.5 3.3 127 chr3R 22913909 intron klg + chr3R 22913972 intron klg + chr3R 22914036 intron klg + chr3R_5_22910001 chr3R_22910001 RAL-359 1918 chr3R 22927867 22927893 chr3R 22927965 22928008 10 105 3.0 2.0 2.5 2.9 141 chr3R 22927867 intron klg + chr3R 22927938 intron klg + chr3R 22928008 intron klg + chr3R_10_22925001 chr3R_22925001 RAL-359 1919 chr3R 22934591 22934637 chr3R 22934693 22934739 7 97 2.5 3.0 2.8 1.8 148 chr3R 22934591 intron klg + chr3R 22934665 intron klg + chr3R 22934739 intron klg + chr3R_7_22930001 chr3R_22930001 RAL-359 1920 chr3R 22977064 22977098 chr3R 22977176 22977211 5 112 2.0 1.5 1.8 1.8 147 chr3R 22977064 intergenic CG17244 + chr3R 22977138 intergenic CG17244 + chr3R 22977211 intergenic CG17244 + chr3R_5_22975001 chr3R_22975001 RAL-359 1921 chr3R 23064866 23064885 chr3R 23064976 23064996 5 111 0.0 4.5 2.2 1.6 130 chr3R 23064866 intron CG17111 - chr3R 23064931 intron CG17111 - chr3R 23064996 intron CG17111 - chr3R_5_23060001 chr3R_23060001 RAL-359 1922 chr3R 23082935 23082980 chr3R 23083149 23083149 4 199 5.0 6.0 5.5 0.6 214 chr3R 23082935 intron CG13830 - chr3R 23083042 intron CG13830 - chr3R 23083149 intron CG13830 - chr3R_4_23080001 chr3R_23080001 RAL-359 1923 chr3R 23090398 23090436 chr3R 23090488 23090539 11 100 1.0 3.5 2.2 3.4 141 chr3R 23090398 intron CG13830 - chr3R 23090468 intron CG13830 - chr3R 23090539 intron CG13830 - chr3R_11_23090001 chr3R_23090001 RAL-359 1924 chr3R 23346828 23346854 chr3R 23346926 23346952 5 98 3.0 2.0 2.5 1.4 124 chr3R 23346828 intergenic not near genes chr3R 23346890 intergenic not near genes chr3R 23346952 intergenic not near genes chr3R_5_23345001 chr3R_23345001 RAL-359 1925 chr3R 23363657 23363697 chr3R 23363763 23363803 8 104 5.0 6.5 5.8 1.2 146 chr3R 23363657 intergenic CG4408 - chr3R 23363730 intergenic CG4408 - chr3R 23363803 intergenic CG4408 - chr3R_8_23360001 chr3R_23360001 RAL-359 1926 chr3R 23518739 23518785 chr3R 23518837 23518883 10 97 2.0 2.5 2.2 3.1 144 chr3R 23518739 intron Irk2 - chr3R 23518811 intron Irk2 - chr3R 23518883 intron Irk2 - chr3R_10_23515001 chr3R_23515001 RAL-359 1927 chr3R 23558382 23558424 chr3R 23560183 23560224 Bari1 6 1801 6.0 3.5 4.8 1.0 1842 chr3R 23558382 intron beat-IV + chr3R 23559303 intron beat-IV + chr3R 23560224 intron beat-IV + chr3R_6_23555001 chr3R_23555001 RAL-359 1928 chr3R 23604022 23604040 chr3R 23604142 23604160 9 120 2.5 0.0 1.2 4.1 138 chr3R 23604022 intron CG10184 - chr3R 23604091 intron CG10184 - chr3R 23604160 intron CG10184 - chr3R_9_23600001 chr3R_23600001 RAL-359 1929 chr3R 23640066 23640087 chr3R 23640166 23640186 9 101 0.0 7.0 3.5 2.0 120 chr3R 23640066 intron CG31145 - chr3R 23640126 intron CG31145 - chr3R 23640186 intron CG31145 - chr3R_9_23640001 chr3R_23640001 RAL-359 1930 chr3R 23650229 23650258 chr3R 23650373 23650402 4 144 0.0 0.0 0.0 4.0 173 chr3R 23650229 intron CG31145 - chr3R 23650316 intron CG31145 - chr3R 23650402 intron CG31145 - chr3R_4_23650001 chr3R_23650001 RAL-359 1931 chr3R 23684683 23684720 chr3R 23685187 23685223 roo 5 502 4.0 7.0 5.5 0.8 540 chr3R 23684683 exon CG18754 + chr3R 23684953 intron CG18754 + chr3R 23685223 exon CG18754 + chr3R_5_23680001 chr3R_23680001 RAL-359 1932 chr3R 23835392 23835432 chr3R 23844561 23844602 roo 14 9169 2.0 2.5 2.2 4.4 9210 chr3R 23835392 intron CG34355 + chr3R 23839997 intron CG34355 + chr3R 23844602 intron CG34355 + chr3R_14_23835001 chr3R_23835001 RAL-359 1933 chr3R 23851070 23851086 chr3R 23858757 23858773 opus 4 7687 5.5 9.0 7.2 0.5 7703 chr3R 23851070 3` UTR CG34355 + chr3R 23854922 intergenic not near genes chr3R 23858773 intergenic not near genes chr3R_4_23850001 chr3R_23850001 RAL-359 1934 chr3R 23944890 23944936 chr3R 23944995 23945027 12 102 3.5 1.0 2.2 3.8 137 chr3R 23944890 intron CG12268 - chr3R 23944958 intron CG12268 - chr3R 23945027 exon CG12268 - chr3R_12_23940001 chr3R_23940001 RAL-359 1935 chr3R 23949024 23949067 chr3R 23949119 23949164 11 96 6.5 5.5 6.0 1.6 140 chr3R 23949024 intergenic not near genes chr3R 23949094 intergenic not near genes chr3R 23949164 intergenic not near genes chr3R_11_23945001 chr3R_23945001 RAL-359 1936 chr3R 24011651 24011678 chr3R 24011754 24011781 11 103 0.0 6.0 3.0 2.8 130 chr3R 24011651 intron KrT95D - chr3R 24011716 intron KrT95D - chr3R 24011781 intron KrT95D - chr3R_11_24010001 chr3R_24010001 RAL-359 1937 chr3R 24015389 24015445 chr3R 24015496 24015541 9 99 0.0 4.0 2.0 3.0 152 chr3R 24015389 intron KrT95D - chr3R 24015465 intron KrT95D - chr3R 24015541 intron KrT95D - chr3R_9_24015001 chr3R_24015001 RAL-359 1938 chr3R 24072076 24072117 chr3R 24072521 24072573 jockey 4 441 4.5 0.0 2.2 1.2 497 chr3R 24072076 intron 4EHP - chr3R 24072324 intron 4EHP - chr3R 24072573 intron 4EHP - chr3R_4_24070001 chr3R_24070001 RAL-359 1939 chr3R 24076905 24076941 chr3R 24078392 24078408 hobo 4 1481 2.5 4.5 3.5 0.9 1503 chr3R 24076905 intron 4EHP - chr3R 24077656 intron 4EHP - chr3R 24078408 intron 4EHP - chr3R_4_24075001 chr3R_24075001 RAL-359 1940 chr3R 24100843 24100877 chr3R 24101004 24101038 8 161 0.0 4.5 2.2 2.5 195 chr3R 24100843 intron 4EHP - chr3R 24100940 intron 4EHP - chr3R 24101038 intron 4EHP - chr3R_8_24100001 chr3R_24100001 RAL-359 1941 chr3R 24199721 24199757 chr3R 24199821 24199857 4 100 5.5 1.0 3.2 1.0 136 chr3R 24199721 intron twin - chr3R 24199789 intron twin - chr3R 24199857 intron twin - chr3R_4_24195001 chr3R_24195001 RAL-359 1942 chr3R 24207210 24207239 chr3R 24212306 24212335 flea 7 5094 5.0 6.0 5.5 1.1 5125 chr3R 24207210 intron twin - chr3R 24209772 intron twin - chr3R 24212335 intron twin - chr3R_7_24205001 chr3R_24205001 RAL-359 1943 chr3R 24236460 24236496 chr3R 24236552 24236593 5 94 1.0 4.0 2.5 1.4 133 chr3R 24236460 exon mask + chr3R 24236526 intron mask + chr3R 24236593 intron mask + chr3R_5_24235001 chr3R_24235001 RAL-359 1944 chr3R 24327557 24327583 chr3R 24329001 24329030 8 1443 28.5 21.0 24.8 0.3 1473 chr3R 24327557 exon BRWD3 + chr3R 24328294 3` UTR BRWD3 + chr3R 24329030 exon CG5728 - chr3R_8_24325001 chr3R_24325001 RAL-359 1945 chr3R 24359622 24359634 chr3R 24359730 24359742 4 108 1.5 2.0 1.8 1.4 120 chr3R 24359622 intron CG18528 - chr3R 24359682 intron CG18528 - chr3R 24359742 intron CG18528 - chr3R_4_24355001 chr3R_24355001 RAL-359 1946 chr3R 24431591 24431626 chr3R 24431678 24431725 11 97 3.5 0.0 1.8 3.9 134 chr3R 24431591 intron nAChRalpha1 - chr3R 24431658 intron nAChRalpha1 - chr3R 24431725 intron nAChRalpha1 - chr3R_11_24430001 chr3R_24430001 RAL-359 1947 chr3R 24434221 24434270 chr3R 24434319 24434368 11 97 3.5 3.0 3.2 2.6 147 chr3R 24434221 intron nAChRalpha1 - chr3R 24434294 intron nAChRalpha1 - chr3R 24434368 intron nAChRalpha1 - chr3R_11_24430001 chr3R_24430001 RAL-359 1948 chr3R 24493041 24493087 chr3R 24493147 24493193 8 103 3.0 4.0 3.5 1.8 152 chr3R 24493041 intergenic not near genes chr3R 24493117 intergenic not near genes chr3R 24493193 intergenic not near genes chr3R_8_24490001 chr3R_24490001 RAL-359 1949 chr3R 24493268 24493279 chr3R 24493517 24493528 BS 5 249 9.5 9.0 9.2 0.5 260 chr3R 24493268 intergenic not near genes chr3R 24493398 intergenic not near genes chr3R 24493528 intergenic not near genes chr3R_5_24490001 chr3R_24490001 RAL-359 1950 chr3R 24493285 24493304 chr3R 24493513 24493553 BS 6 242 5.0 9.0 7.0 0.8 268 chr3R 24493285 intergenic not near genes chr3R 24493419 intergenic not near genes chr3R 24493553 intergenic not near genes chr3R_6_24490001 chr3R_24490001 RAL-359 1951 chr3R 24527785 24527836 chr3R 24527896 24527947 12 111 2.5 2.0 2.2 3.8 162 chr3R 24527785 intergenic CG13618 +,CG6607 + chr3R 24527866 intergenic CG6607 +,CG13618 + chr3R 24527947 intergenic CG6607 +,CG13618 + chr3R_12_24525001 chr3R_24525001 RAL-359 1952 chr3R 24563491 24563527 chr3R 24563592 24563621 8 98 4.0 4.5 4.2 1.5 130 chr3R 24563491 intron CG13624 - chr3R 24563556 intron CG13624 - chr3R 24563621 intron CG13624 - chr3R_8_24560001 chr3R_24560001 RAL-359 1953 chr3R 24670140 24670192 chr3R 24670244 24670297 9 105 2.5 2.5 2.5 2.6 157 chr3R 24670140 intron slo + chr3R 24670218 intron slo + chr3R 24670297 intron slo + chr3R_9_24670001 chr3R_24670001 RAL-359 1954 chr3R 24730077 24730100 chr3R 24732475 24732497 Doc 8 2395 8.0 0.0 4.0 1.6 2420 chr3R 24730077 intron tok + chr3R 24731287 intron tok + chr3R 24732497 intron tok + chr3R_8_24730001 chr3R_24730001 RAL-359 1955 chr3R 24743016 24743059 chr3R 24743121 24743164 5 104 1.0 2.5 1.8 1.8 148 chr3R 24743016 intron tok + chr3R 24743090 intron tok + chr3R 24743164 exon tok + chr3R_5_24740001 chr3R_24740001 RAL-359 1956 chr3R 24927124 24927143 chr3R 24931913 24931954 Doc 9 4806 7.5 2.5 5.0 1.5 4830 chr3R 24927124 intergenic Trf4-2 + chr3R 24929539 intergenic not near genes chr3R 24931954 intergenic CG11771 + chr3R_9_24925001 chr3R_24925001 RAL-359 1957 chr3R 24974893 24974936 chr3R 24974992 24975035 13 99 2.0 5.5 3.8 2.7 142 chr3R 24974893 intergenic not near genes chr3R 24974964 intergenic not near genes chr3R 24975035 intergenic not near genes chr3R_13_24970001 chr3R_24970001 RAL-359 1958 chr3R 25004894 25004916 chr3R 25004997 25005019 5 102 2.0 4.0 3.0 1.2 125 chr3R 25004894 intron tnc + chr3R 25004956 intron tnc + chr3R 25005019 intron tnc + chr3R_5_25000001 chr3R_25000001 RAL-359 1959 chr3R 25072746 25072786 chr3R 25072858 25072898 10 112 5.5 6.5 6.0 1.4 152 chr3R 25072746 3` UTR CG9996 - chr3R 25072822 3` UTR CG9996 - chr3R 25072898 exon CG9996 - chr3R_10_25070001 chr3R_25070001 RAL-359 1960 chr3R 25136377 25136424 chr3R 25136477 25136524 18 99 4.5 3.5 4.0 3.6 147 chr3R 25136377 3` UTR Bili + chr3R 25136450 3` UTR Bili + chr3R 25136524 3` UTR Bili + chr3R_18_25135001 chr3R_25135001 RAL-359 1961 chr3R 25166238 25166366 chr3R 25166338 25166462 7 97 0.0 0.0 0.0 7.0 224 chr3R 25166238 intergenic not near genes chr3R 25166350 intergenic not near genes chr3R 25166462 intergenic not near genes chr3R_7_25165001 chr3R_25165001 RAL-359 1962 chr3R 25203333 25203376 chr3R 25203482 25203526 11 150 2.5 4.5 3.5 2.4 193 chr3R 25203333 intron,intron Cad96Ca -,CG13654 + chr3R 25203430 intron,intron Cad96Ca -,CG13654 + chr3R 25203526 intron,intron Cad96Ca -,CG13654 + chr3R_11_25200001 chr3R_25200001 RAL-359 1963 chr3R 25368467 25368486 chr3R 25368602 25368624 5 136 6.0 0.0 3.0 1.2 157 chr3R 25368467 intron Fur1 - chr3R 25368546 intron Fur1 - chr3R 25368624 intron Fur1 - chr3R_5_25365001 chr3R_25365001 RAL-359 1964 chr3R 25404935 25404969 chr3R 25405044 25405078 13 109 6.0 2.5 4.2 2.5 143 chr3R 25404935 intron Fur1 - chr3R 25405006 intron Fur1 - chr3R 25405078 intron Fur1 - chr3R_13_25405001 chr3R_25405001 RAL-359 1965 chr3R 25604768 25604805 chr3R 25604880 25604917 6 112 2.5 2.5 2.5 1.7 149 chr3R 25604768 3` UTR,intron msi +,ymp - chr3R 25604842 3` UTR,intron msi +,ymp - chr3R 25604917 3` UTR,intron msi +,ymp - chr3R_6_25600001 chr3R_25600001 RAL-359 1966 chr3R 25689110 25689161 chr3R 25689238 25689289 13 126 2.0 3.0 2.5 3.7 179 chr3R 25689110 intergenic not near genes chr3R 25689200 intergenic not near genes chr3R 25689289 intergenic not near genes chr3R_13_25685001 chr3R_25685001 RAL-359 1967 chr3R 25725816 25725860 chr3R 25734992 25735040 roo 15 9178 5.5 4.5 5.0 2.5 9224 chr3R 25725816 intron LpR2 - chr3R 25730428 intron LpR2 - chr3R 25735040 intron LpR2 - chr3R_15_25730001 chr3R_25730001 RAL-359 1968 chr3R 25807731 25807775 chr3R 25807827 25807876 8 100 5.5 3.5 4.5 1.5 145 chr3R 25807731 intergenic CR45652 + chr3R 25807804 intergenic CR45652 + chr3R 25807876 intergenic CR45652 + chr3R_8_25805001 chr3R_25805001 RAL-359 1969 chr3R 25832693 25832708 chr3R 25841895 25841910 roo 4 9202 3.0 5.5 4.2 0.8 9217 chr3R 25832693 exon alpha4GT2 + chr3R 25837302 intron alpha4GT2 + chr3R 25841910 exon alpha4GT2 + chr3R_4_25835001 chr3R_25835001 RAL-359 1970 chr3R 25832710 25832722 chr3R 25841891 25841913 roo 5 9193 1.5 5.5 3.5 1.1 9203 chr3R 25832710 exon alpha4GT2 + chr3R 25837312 intron alpha4GT2 + chr3R 25841913 exon alpha4GT2 + chr3R_5_25835001 chr3R_25835001 RAL-359 1971 chr3R 25843615 25843668 chr3R 25843765 25843818 11 150 1.0 4.0 2.5 3.1 203 chr3R 25843615 intergenic CR45653 + chr3R 25843716 intergenic CR45653 + chr3R 25843818 intergenic CR45653 + chr3R_11_25840001 chr3R_25840001 RAL-359 1972 chr3R 25905902 25905936 chr3R 25906105 25906151 10 207 3.5 3.5 3.5 2.2 249 chr3R 25905902 intron CR43259 - chr3R 25906026 intron CR43259 - chr3R 25906151 3` UTR CR43259 - chr3R_10_25905001 chr3R_25905001 RAL-359 1973 chr3R 25927507 25927532 chr3R 25927609 25927634 5 102 7.0 7.0 7.0 0.6 127 chr3R 25927507 intron CCAP-R - chr3R 25927570 intron CCAP-R - chr3R 25927634 intron CCAP-R - chr3R_5_25925001 chr3R_25925001 RAL-359 1974 chr3R 26060389 26060423 chr3R 26060495 26060529 9 105 4.0 6.5 5.2 1.5 140 chr3R 26060389 intron CG14544 + chr3R 26060459 intron CG14544 + chr3R 26060529 intron CG14544 + chr3R_9_26060001 chr3R_26060001 RAL-359 1975 chr3R 26094607 26094644 chr3R 26094709 26094746 11 100 3.0 6.5 4.8 1.9 139 chr3R 26094607 intron dys - chr3R 26094676 intron dys - chr3R 26094746 intron dys - chr3R_11_26090001 chr3R_26090001 RAL-359 1976 chr3R 26122442 26122477 chr3R 26122538 26122549 7 88 5.0 4.0 4.5 1.3 107 chr3R 26122442 intron CG31324 + chr3R 26122496 intron CG31324 + chr3R 26122549 intron CG31324 + chr3R_7_26120001 chr3R_26120001 RAL-359 1977 chr3R 26126549 26126562 chr3R 26126643 26126668 5 103 4.5 6.5 5.5 0.8 119 chr3R 26126549 intron CG31324 + chr3R 26126608 intron CG31324 + chr3R 26126668 intron,5` UTR CG31324 +,CG14556 + chr3R_5_26125001 chr3R_26125001 RAL-359 1978 chr3R 26138863 26138910 chr3R 26139430 26139471 9 566 4.5 3.5 4.0 1.8 608 chr3R 26138863 intergenic not near genes chr3R 26139167 intergenic not near genes chr3R 26139471 intergenic not near genes chr3R_9_26135001 chr3R_26135001 RAL-359 1979 chr3R 26235489 26235522 chr3R 26235571 26235624 8 93 2.0 2.0 2.0 2.7 135 chr3R 26235489 5` UTR CR42745 + chr3R 26235556 5` UTR CR42745 + chr3R 26235624 intron CR42745 + chr3R_8_26235001 chr3R_26235001 RAL-359 1980 chr3R 26245021 26245051 chr3R 26245235 26245269 5 218 3.0 3.5 3.2 1.2 248 chr3R 26245021 intron CR42745 + chr3R 26245145 intron CR42745 + chr3R 26245269 intron CR42745 + chr3R_5_26245001 chr3R_26245001 RAL-359 1981 chr3R 26247230 26247279 chr3R 26247387 26247428 12 150 3.0 1.5 2.2 3.8 198 chr3R 26247230 intron CR42745 + chr3R 26247329 intron CR42745 + chr3R 26247428 intron CR42745 + chr3R_12_26245001 chr3R_26245001 RAL-359 1982 chr3R 26274517 26274544 chr3R 26274609 26274646 6 104 4.5 4.5 4.5 1.1 129 chr3R 26274517 intron CG6154 + chr3R 26274582 intron CG6154 + chr3R 26274646 intron CG6154 + chr3R_6_26270001 chr3R_26270001 RAL-359 1983 chr3R 26292093 26292111 chr3R 26292193 26292211 4 100 6.5 2.0 4.2 0.8 118 chr3R 26292093 intergenic not near genes chr3R 26292152 intergenic not near genes chr3R 26292211 intergenic not near genes chr3R_4_26290001 chr3R_26290001 RAL-359 1984 chr3R 26307062 26307093 chr3R 26307279 26307310 8 217 3.0 3.5 3.2 1.9 248 chr3R 26307062 intergenic not near genes chr3R 26307186 intergenic not near genes chr3R 26307310 intergenic not near genes chr3R_8_26305001 chr3R_26305001 RAL-359 1985 chr3R 26374819 26374851 chr3R 26374941 26374973 14 121 4.0 3.0 3.5 3.1 154 chr3R 26374819 intergenic not near genes chr3R 26374896 intergenic not near genes chr3R 26374973 intergenic not near genes chr3R_14_26370001 chr3R_26370001 RAL-359 1986 chr3R 26376304 26376341 chr3R 26385484 26385514 roo 8 9170 7.0 0.0 3.5 1.8 9210 chr3R 26376304 intergenic not near genes chr3R 26380909 intergenic not near genes chr3R 26385514 intergenic not near genes chr3R_8_26380001 chr3R_26380001 RAL-359 1987 chr3R 26405906 26405939 chr3R 26406002 26406035 9 95 2.0 4.0 3.0 2.2 129 chr3R 26405906 intergenic not near genes chr3R 26405970 intergenic not near genes chr3R 26406035 intergenic not near genes chr3R_9_26405001 chr3R_26405001 RAL-359 1988 chr3R 26466180 26466228 chr3R 26466298 26466346 11 117 5.0 2.5 3.8 2.3 166 chr3R 26466180 intron CG5455 + chr3R 26466263 intron CG5455 + chr3R 26466346 intron CG5455 + chr3R_11_26465001 chr3R_26465001 RAL-359 1989 chr3R 26470739 26470771 chr3R 26471238 26471270 9 499 2.5 3.0 2.8 2.4 531 chr3R 26470739 3` UTR plum - chr3R 26471004 3` UTR plum - chr3R 26471270 3` UTR plum - chr3R_9_26470001 chr3R_26470001 RAL-359 1990 chr3R 26510497 26510535 chr3R 26519566 26519614 roo 8 9079 5.5 4.0 4.8 1.4 9117 chr3R 26510497 intron plum - chr3R 26515056 intron plum - chr3R 26519614 intron,5` UTR plum -,CR45226 + chr3R_8_26515001 chr3R_26515001 RAL-359 1991 chr3R 26542059 26542068 chr3R 26542142 26542174 4 86 4.0 4.5 4.2 0.8 115 chr3R 26542059 intron scrib + chr3R 26542116 intron scrib + chr3R 26542174 intron scrib + chr3R_4_26540001 chr3R_26540001 RAL-359 1992 chr3R 26558306 26558356 chr3R 26565639 26565665 Stalker4 8 7323 3.0 1.5 2.2 2.5 7359 chr3R 26558306 intron scrib + chr3R 26561986 intron scrib + chr3R 26565665 intron scrib + chr3R_8_26560001 chr3R_26560001 RAL-359 1993 chr3R 26641618 26641656 chr3R 26641725 26641749 4 100 3.5 3.5 3.5 0.9 131 chr3R 26641618 intergenic not near genes chr3R 26641684 intergenic not near genes chr3R 26641749 intergenic not near genes chr3R_4_26640001 chr3R_26640001 RAL-359 1994 chr3R 26642726 26642744 chr3R 26643140 26643158 jockey 5 414 7.5 9.5 8.5 0.5 432 chr3R 26642726 intergenic not near genes chr3R 26642942 intergenic not near genes chr3R 26643158 intergenic not near genes chr3R_5_26640001 chr3R_26640001 RAL-359 1995 chr3R 26770226 26770230 chr3R 26770323 26770327 6 97 10.5 1.5 6.0 0.9 101 chr3R 26770226 intergenic CR45563 + chr3R 26770276 intergenic CR45563 + chr3R 26770327 intergenic CR45563 + chr3R_6_26770001 chr3R_26770001 RAL-359 1996 chr3R 26770235 26770269 chr3R 26770317 26770366 12 94 4.0 1.0 2.5 3.4 131 chr3R 26770235 intergenic CR45563 + chr3R 26770300 intergenic CR45563 + chr3R 26770366 intergenic not near genes chr3R_12_26770001 chr3R_26770001 RAL-359 1997 chr3R 26810532 26810581 chr3R 26811037 26811086 roo 10 505 1.5 2.5 2.0 3.3 554 chr3R 26810532 intron Tl + chr3R 26810809 intron Tl + chr3R 26811086 intron Tl + chr3R_10_26810001 chr3R_26810001 RAL-359 1998 chr3R 26833140 26833165 chr3R 26833247 26833254 9 105 3.5 4.0 3.8 1.9 114 chr3R 26833140 intron Tl + chr3R 26833197 intron Tl + chr3R 26833254 intron Tl + chr3R_9_26830001 chr3R_26830001 RAL-359 1999 chr3R 26920641 26920685 chr3R 26921139 26921183 13 495 4.0 2.0 3.0 3.2 542 chr3R 26920641 intron sda + chr3R 26920912 intron sda + chr3R 26921183 intron sda + chr3R_13_26920001 chr3R_26920001 RAL-359 2000 chr3R 27007394 27007422 chr3R 27016549 27016577 roo 6 9153 7.0 7.0 7.0 0.8 9183 chr3R 27007394 intron RYa-R + chr3R 27011986 intron RYa-R + chr3R 27016577 intron RYa-R + chr3R_6_27010001 chr3R_27010001 RAL-359 2001 chr3R 27024157 27024208 chr3R 27024260 27024311 17 103 6.5 2.5 4.5 3.1 154 chr3R 27024157 intron RYa-R + chr3R 27024234 intron RYa-R + chr3R 27024311 intron RYa-R + chr3R_17_27020001 chr3R_27020001 RAL-359 2002 chr3R 27028702 27028755 chr3R 27028801 27028854 13 99 1.5 3.0 2.2 4.1 152 chr3R 27028702 intron RYa-R + chr3R 27028778 intron RYa-R + chr3R 27028854 intron RYa-R + chr3R_13_27025001 chr3R_27025001 RAL-359 2003 chr3R 27030204 27030241 chr3R 27030354 27030386 8 149 6.5 0.0 3.2 1.9 182 chr3R 27030204 intron RYa-R + chr3R 27030295 intron RYa-R + chr3R 27030386 intron RYa-R + chr3R_8_27030001 chr3R_27030001 RAL-359 2004 chr3R 27034758 27034806 chr3R 27034862 27034881 10 100 3.0 5.5 4.2 1.9 123 chr3R 27034758 intron RYa-R + chr3R 27034820 intron RYa-R + chr3R 27034881 intron RYa-R + chr3R_10_27030001 chr3R_27030001 RAL-359 2005 chr3R 27077099 27077124 chr3R 27077185 27077222 5 95 5.5 5.5 5.5 0.8 123 chr3R 27077099 intron CG14257 + chr3R 27077160 intron CG14257 + chr3R 27077222 intron CG14257 + chr3R_5_27075001 chr3R_27075001 RAL-359 2006 chr3R 27140510 27140546 chr3R 27148128 27148176 412 8 7623 4.0 6.0 5.0 1.3 7666 chr3R 27140510 intron CG6051 - chr3R 27144343 intron CG6051 - chr3R 27148176 intron CG6051 - chr3R_8_27140001 chr3R_27140001 RAL-359 2007 chr3R 27152366 27152409 chr3R 27152466 27152514 9 105 2.0 2.0 2.0 3.0 148 chr3R 27152366 intron Men-b + chr3R 27152440 intron Men-b + chr3R 27152514 intron Men-b + chr3R_9_27150001 chr3R_27150001 RAL-359 2008 chr3R 27275830 27275877 chr3R 27275934 27275981 10 104 3.0 6.5 4.8 1.7 151 chr3R 27275830 intron CG5938 + chr3R 27275906 intron CG5938 + chr3R 27275981 intron CG5938 + chr3R_10_27275001 chr3R_27275001 RAL-359 2009 chr3R 27327409 27327455 chr3R 27327508 27327551 8 92 4.0 5.5 4.8 1.4 142 chr3R 27327409 intergenic not near genes chr3R 27327480 intergenic not near genes chr3R 27327551 intergenic not near genes chr3R_8_27325001 chr3R_27325001 RAL-359 2010 chr3R 27329471 27329502 chr3R 27329553 27329599 5 91 1.5 1.5 1.5 2.0 128 chr3R 27329471 intergenic CG3330 - chr3R 27329535 intergenic CG3330 - chr3R 27329599 intergenic CG3330 - chr3R_5_27325001 chr3R_27325001 RAL-359 2011 chr3R 27342785 27342825 chr3R 27351377 27351422 Tirant 13 8599 3.0 3.5 3.2 3.1 8637 chr3R 27342785 intron CG42534 + chr3R 27347104 intron CG42534 + chr3R 27351422 intron CG42534 + chr3R_13_27345001 chr3R_27345001 RAL-359 2012 chr3R 27448816 27448847 chr3R 27448940 27448969 6 122 1.5 5.0 3.2 1.4 153 chr3R 27448816 intergenic not near genes chr3R 27448892 intergenic not near genes chr3R 27448969 intergenic not near genes chr3R_6_27445001 chr3R_27445001 RAL-359 2013 chr3R 27452567 27452598 chr3R 27452767 27452798 5 199 3.0 2.0 2.5 1.4 231 chr3R 27452567 intergenic not near genes chr3R 27452682 intergenic not near genes chr3R 27452798 intergenic not near genes chr3R_5_27450001 chr3R_27450001 RAL-359 2014 chr3R 27470877 27470897 chr3R 27471009 27471030 7 133 3.5 1.0 2.2 2.2 153 chr3R 27470877 intergenic not near genes chr3R 27470954 intergenic not near genes chr3R 27471030 intergenic not near genes chr3R_7_27470001 chr3R_27470001 RAL-359 2015 chr3R 27494308 27494347 chr3R 27494441 27494486 10 136 3.0 1.5 2.2 3.1 178 chr3R 27494308 intergenic not near genes chr3R 27494397 intergenic not near genes chr3R 27494486 intergenic not near genes chr3R_10_27490001 chr3R_27490001 RAL-359 2016 chr3R 27496573 27496594 chr3R 27496698 27496719 5 125 8.0 3.5 5.8 0.7 146 chr3R 27496573 intergenic not near genes chr3R 27496646 intergenic not near genes chr3R 27496719 intergenic not near genes chr3R_5_27495001 chr3R_27495001 RAL-359 2017 chr3R 27521155 27521183 chr3R 27530384 27530412 roo 15 9229 2.0 7.0 4.5 2.7 9257 chr3R 27521155 intron CG12885 + chr3R 27525784 intron CG12885 + chr3R 27530412 intron CG12885 + chr3R_15_27525001 chr3R_27525001 RAL-359 2018 chr3R 27578471 27578514 chr3R 27578576 27578624 4 109 3.0 5.0 4.0 0.8 153 chr3R 27578471 intron wdb - chr3R 27578548 intron wdb - chr3R 27578624 intron wdb - chr3R_4_27575001 chr3R_27575001 RAL-359 2019 chr3R 27725548 27725588 chr3R 27731010 27731050 I-element 9 5462 4.5 4.0 4.2 1.7 5502 chr3R 27725548 intergenic not near genes chr3R 27728299 intergenic not near genes chr3R 27731050 intergenic not near genes chr3R_9_27725001 chr3R_27725001 RAL-359 2020 chr3R 27779261 27779283 chr3R 27779361 27779371 8 98 3.0 4.0 3.5 1.8 110 chr3R 27779261 exon CG34353 - chr3R 27779316 intron CG34353 - chr3R 27779371 intron CG34353 - chr3R_8_27775001 chr3R_27775001 RAL-359 2021 chr3R 27799917 27799941 chr3R 27800019 27800043 6 100 3.5 3.5 3.5 1.3 126 chr3R 27799917 intron CG34353 - chr3R 27799980 intron CG34353 - chr3R 27800043 intron CG34353 - chr3R_6_27795001 chr3R_27795001 RAL-359 2022 chr3R 27840259 27840269 chr3R 27840412 27840417 5 152 0.0 1.5 0.8 2.8 158 chr3R 27840259 intron CG34353 - chr3R 27840338 intron CG34353 - chr3R 27840417 intron CG34353 - chr3R_5_27840001 chr3R_27840001 RAL-359 2023 chr3R 27856758 27856783 chr3R 27858247 27858286 hopper2 8 1500 5.0 2.5 3.8 1.7 1528 chr3R 27856758 intron CG34353 - chr3R 27857522 intron CG34353 - chr3R 27858286 intron CG34353 - chr3R_8_27855001 chr3R_27855001 RAL-359 2024 chr3R 27862939 27862981 chr3R 27868259 27868301 Transpac 7 5322 4.0 2.0 3.0 1.8 5362 chr3R 27862939 intron CG34353 - chr3R 27865620 intron CG34353 - chr3R 27868301 intron CG34353 - chr3R_7_27865001 chr3R_27865001 RAL-359 2025 chr3R 27875685 27875729 chr3R 27882760 27882804 297 13 7075 4.5 5.0 4.8 2.2 7119 chr3R 27875685 intron CG34353 - chr3R 27879244 intron CG34353 - chr3R 27882804 intron CG34353 - chr3R_13_27875001 chr3R_27875001 RAL-359 2026 chr3R 27900436 27900483 chr3R 27900543 27900594 6 110 3.0 1.5 2.2 1.9 158 chr3R 27900436 intron CG34353 - chr3R 27900515 intron CG34353 - chr3R 27900594 intron CG34353 - chr3R_6_27900001 chr3R_27900001 RAL-359 2027 chr3R 28068493 28068524 chr3R 28073955 28073986 I-element 5 5459 0.5 0.5 0.5 3.3 5493 chr3R 28068493 intron CG34362 + chr3R 28071240 intron CG34362 + chr3R 28073986 intron CG34362 + chr3R_5_28070001 chr3R_28070001 RAL-359 2028 chr3R 28173658 28173700 chr3R 28181108 28181150 mdg1 9 7450 2.5 3.5 3.0 2.2 7492 chr3R 28173658 intron CG34354 + chr3R 28177404 intron CG34354 + chr3R 28181150 intron CG34354 + chr3R_9_28175001 chr3R_28175001 RAL-359 2029 chr3R 28215813 28215849 chr3R 28215897 28215911 7 87 3.0 3.5 3.2 1.7 98 chr3R 28215813 intron CG34354 + chr3R 28215862 intron CG34354 + chr3R 28215911 intron CG34354 + chr3R_7_28215001 chr3R_28215001 RAL-359 2030 chr3R 28282976 28283017 chr3R 28283622 28283666 25 648 8.5 13.0 10.8 2.1 690 chr3R 28282976 exon CG34436 + chr3R 28283321 exon CG34436 + chr3R 28283666 intergenic CG34437 +,CG34436 + chr3R_25_28280001 chr3R_28280001 RAL-359 2031 chr3R 28302084 28302116 chr3R 28302546 28302578 jockey 10 462 7.5 4.0 5.8 1.5 494 chr3R 28302084 intergenic not near genes chr3R 28302331 intergenic not near genes chr3R 28302578 intergenic not near genes chr3R_10_28300001 chr3R_28300001 RAL-359 2032 chr3R 28351953 28351991 chr3R 28352049 28352087 4 95 3.5 9.5 6.5 0.5 134 chr3R 28351953 intergenic Or98b + chr3R 28352020 intergenic Or98b + chr3R 28352087 intergenic Or98b + chr3R_4_28350001 chr3R_28350001 RAL-359 2033 chr3R 28407698 28407740 chr3R 28407795 28407828 16 103 0.5 4.0 2.2 5.0 130 chr3R 28407698 intergenic not near genes chr3R 28407763 intergenic not near genes chr3R 28407828 intergenic not near genes chr3R_16_28405001 chr3R_28405001 RAL-359 2034 chr3R 28478408 28478446 chr3R 28478497 28478547 7 90 3.5 2.0 2.8 1.8 139 chr3R 28478408 intergenic not near genes chr3R 28478478 intergenic not near genes chr3R 28478547 intergenic not near genes chr3R_7_28475001 chr3R_28475001 RAL-359 2035 chr3R 28479141 28479160 chr3R 28479244 28479262 10 101 4.0 4.0 4.0 2.0 121 chr3R 28479141 intergenic not near genes chr3R 28479202 intergenic not near genes chr3R 28479262 intergenic not near genes chr3R_10_28475001 chr3R_28475001 RAL-359 2036 chr3R 28480307 28480327 chr3R 28480408 28480428 5 101 2.0 3.5 2.8 1.3 121 chr3R 28480307 intergenic not near genes chr3R 28480368 intergenic not near genes chr3R 28480428 intergenic not near genes chr3R_5_28480001 chr3R_28480001 RAL-359 2037 chr3R 28484353 28484395 chr3R 28486252 28486292 60 1900 67.5 95.5 81.5 0.7 1939 chr3R 28484353 intergenic CG1894 + chr3R 28485322 exon CG1894 + chr3R 28486292 intergenic CG1894 + chr3R_60_28485001 chr3R_28485001 RAL-359 2038 chr3R 28638908 28638947 chr3R 28640205 28640251 9 1302 14.5 12.0 13.2 0.6 1343 chr3R 28638908 intergenic CG9988 + chr3R 28639580 intergenic not near genes chr3R 28640251 intergenic not near genes chr3R_9_28635001 chr3R_28635001 RAL-359 2039 chr3R 28637837 28637844 chr3R 28640292 28640301 4 2456 27.5 13.5 20.5 0.2 2464 chr3R 28637837 exon CG9988 + chr3R 28639069 intergenic CG9988 + chr3R 28640301 intergenic not near genes chr3R_4_28635001 chr3R_28635001 RAL-359 2040 chr3R 28637836 28637870 chr3R 28640303 28640325 4 2462 31.5 15.5 23.5 0.2 2489 chr3R 28637836 exon CG9988 + chr3R 28639080 intergenic CG9988 + chr3R 28640325 intergenic not near genes chr3R_4_28635001 chr3R_28635001 RAL-359 2041 chr3R 28742467 28742507 chr3R 28742563 28742603 5 95 1.5 3.5 2.5 1.4 136 chr3R 28742467 intron AstA-R2 - chr3R 28742535 intron AstA-R2 - chr3R 28742603 intron AstA-R2 - chr3R_5_28740001 chr3R_28740001 RAL-359 2042 chr3R 28758302 28758315 chr3R 28771329 28771342 Stalker4 5 13027 6.0 0.5 3.2 1.2 13040 chr3R 28758302 intergenic aqrs - chr3R 28764822 intergenic not near genes chr3R 28771342 intergenic not near genes chr3R_5_28760001 chr3R_28760001 RAL-359 2043 chr3R 28772920 28772951 chr3R 28773172 28773177 6 247 1.0 5.0 3.0 1.5 257 chr3R 28772920 intergenic not near genes chr3R 28773048 intergenic not near genes chr3R 28773177 intergenic not near genes chr3R_6_28770001 chr3R_28770001 RAL-359 2044 chr3R 28792852 28792898 chr3R 28797967 28798012 jockey 4 5114 1.0 1.5 1.2 1.8 5160 chr3R 28792852 intergenic not near genes chr3R 28795432 intergenic not near genes chr3R 28798012 intergenic not near genes chr3R_4_28795001 chr3R_28795001 RAL-359 2045 chr3R 28811578 28811603 chr3R 28811744 28811769 6 166 4.5 2.0 3.2 1.4 191 chr3R 28811578 intergenic wdn - chr3R 28811674 intergenic wdn -,CG1646 + chr3R 28811769 intergenic CG1646 +,wdn - chr3R_6_28810001 chr3R_28810001 RAL-359 2046 chr3R 21907534 21907536 chr3R 28831801 28831802 28 6924267 15.5 13.5 14.5 1.8 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_28_25365001 chr3R_25365001 RAL-359 2047 chr3R 28870605 28870652 chr3R 28870708 28870755 18 102 1.5 3.0 2.2 5.6 150 chr3R 28870605 3` UTR CG33203 - chr3R 28870680 3` UTR CG33203 - chr3R 28870755 3` UTR CG33203 - chr3R_18_28870001 chr3R_28870001 RAL-359 2048 chr3R 28971150 28971193 chr3R 28971251 28971294 7 101 2.5 2.5 2.5 2.0 144 chr3R 28971150 5` UTR CR45669 + chr3R 28971222 5` UTR CR45669 + chr3R 28971294 5` UTR CR45669 + chr3R_7_28970001 chr3R_28970001 RAL-359 2049 chr3R 29009409 29009445 chr3R 29009566 29009583 6 155 4.0 3.5 3.8 1.2 174 chr3R 29009409 intron wat - chr3R 29009496 intron wat - chr3R 29009583 intron wat - chr3R_6_29005001 chr3R_29005001 RAL-359 2050 chr3R 29079367 29079399 chr3R 29080759 29080791 NOF 9 1392 6.5 8.0 7.2 1.1 1424 chr3R 29079367 intron CG11873 + chr3R 29080079 intron CG11873 + chr3R 29080791 intron CG11873 + chr3R_9_29080001 chr3R_29080001 RAL-359 2051 chr3R 29213040 29213091 chr3R 29213143 29213194 18 103 3.5 4.5 4.0 3.6 154 chr3R 29213040 intergenic not near genes chr3R 29213117 intergenic not near genes chr3R 29213194 intergenic not near genes chr3R_18_29210001 chr3R_29210001 RAL-359 2052 chr3R 29237532 29237540 chr3R 29239420 29239433 4 1890 19.0 6.0 12.5 0.3 1901 chr3R 29237532 exon CG11951 - chr3R 29238482 intron CG11951 - chr3R 29239433 exon CG31427 - chr3R_4_29235001 chr3R_29235001 RAL-359 2053 chr3R 29319822 29319848 chr3R 29320161 29320178 jockey 5 337 3.0 10.5 6.8 0.6 356 chr3R 29319822 intergenic Cnx99A - chr3R 29320000 intergenic Cnx99A - chr3R 29320178 intergenic not near genes chr3R_5_29320001 chr3R_29320001 RAL-359 2054 chr3R 29319853 29319854 chr3R 29320157 29320193 jockey 4 330 3.0 9.0 6.0 0.6 340 chr3R 29319853 intergenic Cnx99A - chr3R 29320023 intergenic Cnx99A - chr3R 29320193 intergenic not near genes chr3R_4_29320001 chr3R_29320001 RAL-359 2055 chr3R 29365377 29365390 chr3R 29365479 29365492 4 102 8.0 7.0 7.5 0.5 115 chr3R 29365377 intergenic not near genes chr3R 29365434 intergenic not near genes chr3R 29365492 intergenic not near genes chr3R_4_29365001 chr3R_29365001 RAL-359 2056 chr3R 29376340 29376365 chr3R 29376448 29376473 10 108 3.0 0.0 1.5 4.0 133 chr3R 29376340 intergenic not near genes chr3R 29376406 intergenic not near genes chr3R 29376473 intergenic not near genes chr3R_10_29375001 chr3R_29375001 RAL-359 2057 chr3R 29384163 29384185 chr3R 29384260 29384275 4 92 1.5 3.5 2.5 1.1 112 chr3R 29384163 intron Ptp99A + chr3R 29384219 intron Ptp99A + chr3R 29384275 intron Ptp99A + chr3R_4_29380001 chr3R_29380001 RAL-359 2058 chr3R 29402974 29403006 chr3R 29403076 29403121 6 113 1.5 5.5 3.5 1.3 147 chr3R 29402974 intron Ptp99A + chr3R 29403048 intron Ptp99A + chr3R 29403121 intron Ptp99A + chr3R_6_29400001 chr3R_29400001 RAL-359 2059 chr3R 29406604 29406611 chr3R 29407910 29407917 jockey 4 1306 10.5 9.0 9.8 0.4 1313 chr3R 29406604 intron Ptp99A + chr3R 29407260 intron Ptp99A + chr3R 29407917 intron Ptp99A + chr3R_4_29405001 chr3R_29405001 RAL-359 2060 chr3R 29406623 29406636 chr3R 29407909 29407941 jockey 6 1300 5.5 9.0 7.2 0.7 1318 chr3R 29406623 intron Ptp99A + chr3R 29407282 intron Ptp99A + chr3R 29407941 intron Ptp99A + chr3R_6_29405001 chr3R_29405001 RAL-359 2061 chr3R 29439698 29439748 chr3R 29439807 29439827 5 103 2.0 3.0 2.5 1.4 129 chr3R 29439698 intron Ptp99A + chr3R 29439762 intron Ptp99A + chr3R 29439827 intron Ptp99A + chr3R_5_29435001 chr3R_29435001 RAL-359 2062 chr3R 29449353 29449385 chr3R 29449451 29449483 10 98 3.0 4.5 3.8 2.1 130 chr3R 29449353 intron Ptp99A + chr3R 29449418 intron Ptp99A + chr3R 29449483 intron Ptp99A + chr3R_10_29445001 chr3R_29445001 RAL-359 2063 chr3R 29449768 29449816 chr3R 29449871 29449919 11 102 4.5 2.0 3.2 2.6 151 chr3R 29449768 intron Ptp99A + chr3R 29449844 intron Ptp99A + chr3R 29449919 intron Ptp99A + chr3R_11_29445001 chr3R_29445001 RAL-359 2064 chr3R 29505872 29505891 chr3R 29505969 29505988 6 95 2.5 4.5 3.5 1.3 116 chr3R 29505872 intergenic not near genes chr3R 29505930 intergenic not near genes chr3R 29505988 intergenic not near genes chr3R_6_29505001 chr3R_29505001 RAL-359 2065 chr3R 29719398 29719449 chr3R 29719496 29719547 18 97 5.0 5.0 5.0 3.0 149 chr3R 29719398 intron CG15506 + chr3R 29719472 intron CG15506 + chr3R 29719547 intron CG15506 + chr3R_18_29715001 chr3R_29715001 RAL-359 2066 chr3R 29738251 29738292 chr3R 29739733 29739779 hobo 4 1486 2.5 3.5 3.0 1.0 1528 chr3R 29738251 intergenic CG1969 +,CG7598 + chr3R 29739015 intron CG1969 + chr3R 29739779 5` UTR CG1969 + chr3R_4_29735001 chr3R_29735001 RAL-359 2067 chr3R 29760347 29760381 chr3R 29761568 29761602 pogo 6 1221 4.0 4.0 4.0 1.2 1255 chr3R 29760347 intergenic not near genes chr3R 29760974 intergenic not near genes chr3R 29761602 intergenic not near genes chr3R_6_29760001 chr3R_29760001 RAL-359 2068 chr3R 29880564 29880601 chr3R 29880669 29880705 5 102 2.0 4.5 3.2 1.2 141 chr3R 29880564 intron CG31038 + chr3R 29880634 intron CG31038 + chr3R 29880705 intron CG31038 + chr3R_5_29880001 chr3R_29880001 RAL-359 2069 chr3R 29882000 29882051 chr3R 29891177 29891228 roo 16 9176 3.5 2.5 3.0 4.0 9228 chr3R 29882000 intron CG31038 + chr3R 29886614 intron CG31038 + chr3R 29891228 intron CG31038 + chr3R_16_29885001 chr3R_29885001 RAL-359 2070 chr3R 29923646 29923669 chr3R 29925231 29925254 11 1585 28.0 44.5 36.2 0.3 1608 chr3R 29923646 intergenic Jon99Cii -,Jon99Ciii + chr3R 29924450 exon Jon99Cii - chr3R 29925254 3` UTR Jon99Ci - chr3R_11_29920001 chr3R_29920001 RAL-359 2071 chr3R 29923645 29923680 chr3R 29925257 29925272 11 1588 29.0 37.0 33.0 0.3 1627 chr3R 29923645 intergenic Jon99Cii -,Jon99Ciii + chr3R 29924458 exon Jon99Cii - chr3R 29925272 3` UTR Jon99Ci - chr3R_11_29920001 chr3R_29920001 RAL-359 2072 chr3R 30032148 30032160 chr3R 30032247 30032259 6 99 9.0 7.5 8.2 0.7 111 chr3R 30032148 intron Axn + chr3R 30032204 intron Axn + chr3R 30032259 intron Axn + chr3R_6_30030001 chr3R_30030001 RAL-359 2073 chr3R 30075565 30075587 chr3R 30075674 30075696 9 109 2.5 4.5 3.5 2.0 131 chr3R 30075565 intron sima + chr3R 30075630 intron sima + chr3R 30075696 intron sima + chr3R_9_30075001 chr3R_30075001 RAL-359 2074 chr3R 30080439 30080466 chr3R 30080536 30080565 4 98 2.5 2.5 2.5 1.1 126 chr3R 30080439 intron sima + chr3R 30080502 intron sima + chr3R 30080565 intron sima + chr3R_4_30080001 chr3R_30080001 RAL-359 2075 chr3R 30084840 30084879 chr3R 30086327 30086366 hobo 4 1480 0.5 2.5 1.5 1.6 1526 chr3R 30084840 intron sima + chr3R 30085603 intron sima + chr3R 30086366 intron sima + chr3R_4_30085001 chr3R_30085001 RAL-359 2076 chr3R 30099049 30099089 chr3R 30099148 30099189 13 100 4.5 5.5 5.0 2.2 140 chr3R 30099049 intron sima + chr3R 30099119 intron sima + chr3R 30099189 intron sima + chr3R_13_30095001 chr3R_30095001 RAL-359 2077 chr3R 30112936 30112986 chr3R 30113032 30113082 12 91 1.0 2.0 1.5 4.8 146 chr3R 30112936 intron sima + chr3R 30113009 intron sima + chr3R 30113082 intron sima + chr3R_12_30110001 chr3R_30110001 RAL-359 2078 chr3R 30177731 30177773 chr3R 30177868 30177910 6 136 3.0 3.0 3.0 1.5 179 chr3R 30177731 intergenic CG1983 -,CG15530 + chr3R 30177820 intergenic CG15530 +,CG1983 - chr3R 30177910 5` UTR CG15530 + chr3R_6_30175001 chr3R_30175001 RAL-359 2079 chr3R 30284538 30284566 chr3R 30284646 30284686 5 118 3.0 0.0 1.5 2.0 148 chr3R 30284538 intron hdc + chr3R 30284612 intron hdc + chr3R 30284686 intron hdc + chr3R_5_30280001 chr3R_30280001 RAL-359 2080 chr3R 30287755 30287774 chr3R 30287857 30287877 5 103 2.5 2.5 2.5 1.4 122 chr3R 30287755 intron hdc + chr3R 30287816 intron hdc + chr3R 30287877 intron hdc + chr3R_5_30285001 chr3R_30285001 RAL-359 2081 chr3R 30292356 30292383 chr3R 30292452 30292481 4 97 6.0 0.0 3.0 1.0 125 chr3R 30292356 intron hdc + chr3R 30292418 intron hdc + chr3R 30292481 intron hdc + chr3R_4_30290001 chr3R_30290001 RAL-359 2082 chr3R 30298631 30298671 chr3R 30298728 30298770 4 96 4.0 3.5 3.8 0.8 139 chr3R 30298631 intron hdc + chr3R 30298700 intron hdc + chr3R 30298770 intron hdc + chr3R_4_30295001 chr3R_30295001 RAL-359 2083 chr3R 30396207 30396237 chr3R 30404486 30404523 roo 6 8284 5.0 1.5 3.2 1.4 8316 chr3R 30396207 intergenic not near genes chr3R 30400365 intergenic not near genes chr3R 30404523 5` UTR CR45570 + chr3R_6_30400001 chr3R_30400001 RAL-359 2084 chr3R 30457994 30458028 chr3R 30458094 30458128 12 99 4.0 3.0 3.5 2.7 134 chr3R 30457994 intron CG2224 - chr3R 30458061 intron CG2224 - chr3R 30458128 intron CG2224 - chr3R_12_30455001 chr3R_30455001 RAL-359 2085 chr3R 30480456 30480506 chr3R 30482944 30482994 jockey 15 2482 4.0 3.5 3.8 3.1 2538 chr3R 30480456 intron PH4alphaEFB + chr3R 30481725 intron PH4alphaEFB + chr3R 30482994 intron PH4alphaEFB + chr3R_15_30480001 chr3R_30480001 RAL-359 2086 chr3R 30548991 30549029 chr3R 30549103 30549141 12 110 8.0 4.0 6.0 1.7 150 chr3R 30548991 intron tmod + chr3R 30549066 intron tmod + chr3R 30549141 intron tmod + chr3R_12_30545001 chr3R_30545001 RAL-359 2087 chr3R 30590918 30590930 chr3R 30591038 30591054 5 123 3.0 5.0 4.0 1.0 136 chr3R 30590918 intergenic not near genes chr3R 30590986 intergenic not near genes chr3R 30591054 intergenic not near genes chr3R_5_30590001 chr3R_30590001 RAL-359 2088 chr3R 30592497 30592518 chr3R 30592619 30592645 7 125 5.5 3.0 4.2 1.3 148 chr3R 30592497 intergenic CG2246 - chr3R 30592571 intergenic CG2246 - chr3R 30592645 intergenic CG2246 - chr3R_7_30590001 chr3R_30590001 RAL-359 2089 chr3R 30602668 30602705 chr3R 30602768 30602805 9 95 2.0 4.5 3.2 2.1 137 chr3R 30602668 exon CG31021 + chr3R 30602736 intron CG31021 + chr3R 30602805 exon CG31021 + chr3R_9_30600001 chr3R_30600001 RAL-359 2090 chr3R 30627609 30627633 chr3R 30627684 30627733 10 94 4.0 4.5 4.2 1.9 124 chr3R 30627609 exon CG2267 - chr3R 30627671 exon CG2267 - chr3R 30627733 exon CG2267 - chr3R_10_30625001 chr3R_30625001 RAL-359 2091 chr3R 30679501 30679548 chr3R 30686988 30687014 blood 14 7485 1.5 2.5 2.0 4.7 7513 chr3R 30679501 intergenic not near genes chr3R 30683258 intergenic not near genes chr3R 30687014 intergenic not near genes chr3R_14_30680001 chr3R_30680001 RAL-359 2092 chr3R 30818793 30818828 chr3R 30820378 30820413 1360 5 1585 4.5 4.5 4.5 0.9 1620 chr3R 30818793 intron cindr + chr3R 30819603 intron cindr + chr3R 30820413 intron cindr + chr3R_5_30815001 chr3R_30815001 RAL-359 2093 chr3R 31073335 31073337 chr3R 31073424 31073438 4 98 3.0 5.5 4.2 0.8 103 chr3R 31073335 exon Sox100B + chr3R 31073386 intron Sox100B + chr3R 31073438 intron Sox100B + chr3R_4_31070001 chr3R_31070001 RAL-359 2094 chr3R 31074231 31074259 chr3R 31081849 31081877 springer 6 7618 1.5 1.5 1.5 2.4 7646 chr3R 31074231 intron Sox100B + chr3R 31078054 intron Sox100B + chr3R 31081877 intron Sox100B + chr3R_6_31075001 chr3R_31075001 RAL-359 2095 chr3R 31084903 31084930 chr3R 31084983 31085026 5 93 0.0 3.5 1.8 1.8 123 chr3R 31084903 intergenic not near genes chr3R 31084964 intergenic not near genes chr3R 31085026 intergenic not near genes chr3R_5_31080001 chr3R_31080001 RAL-359 2096 chr3R 31260233 31260263 chr3R 31260321 31260360 13 94 5.5 4.5 5.0 2.2 127 chr3R 31260233 intergenic CG18672 +,CG3669 + chr3R 31260296 5` UTR CG18672 + chr3R 31260360 5` UTR CG18672 + chr3R_13_31260001 chr3R_31260001 RAL-359 2097 chr3R 31279352 31279398 chr3R 31285563 31285591 diver 12 6206 4.0 1.0 2.5 3.4 6239 chr3R 31279352 intergenic not near genes chr3R 31282472 intergenic not near genes chr3R 31285591 intergenic not near genes chr3R_12_31280001 chr3R_31280001 RAL-359 2098 chr3R 31295338 31295378 chr3R 31295444 31295477 10 99 3.5 2.0 2.8 2.6 139 chr3R 31295338 intergenic not near genes chr3R 31295408 intergenic not near genes chr3R 31295477 intergenic not near genes chr3R_10_31295001 chr3R_31295001 RAL-359 2099 chr3R 31370678 31370726 chr3R 31370793 31370841 4 111 2.5 1.5 2.0 1.3 163 chr3R 31370678 3` UTR CG34347 + chr3R 31370760 3` UTR CG34347 + chr3R 31370841 3` UTR CG34347 + chr3R_4_31370001 chr3R_31370001 RAL-359 2100 chr3R 31412687 31412732 chr3R 31412800 31412845 10 112 1.5 3.0 2.2 3.1 158 chr3R 31412687 intron Gprk2 + chr3R 31412766 intron Gprk2 + chr3R 31412845 intron Gprk2 + chr3R_10_31410001 chr3R_31410001 RAL-359 2101 chr3R 31413077 31413092 chr3R 31418297 31418311 copia 4 5220 4.5 0.0 2.2 1.2 5234 chr3R 31413077 intron Gprk2 + chr3R 31415694 intron Gprk2 + chr3R 31418311 intron Gprk2 + chr3R_4_31415001 chr3R_31415001 RAL-359 2102 chr3R 31426877 31426914 chr3R 31426980 31427026 9 109 3.0 6.5 4.8 1.6 149 chr3R 31426877 intron Gprk2 + chr3R 31426952 intron Gprk2 + chr3R 31427026 intron Gprk2 + chr3R_9_31425001 chr3R_31425001 RAL-359 2103 chr3R 31435341 31435390 chr3R 31435513 31435562 13 172 3.5 5.0 4.2 2.5 221 chr3R 31435341 intron Gprk2 + chr3R 31435452 intron Gprk2 + chr3R 31435562 intron Gprk2 + chr3R_13_31435001 chr3R_31435001 RAL-359 2104 chr3R 31509115 31509142 chr3R 31509393 31509417 5 279 7.0 3.0 5.0 0.8 302 chr3R 31509115 intergenic not near genes chr3R 31509266 intergenic not near genes chr3R 31509417 intergenic not near genes chr3R_5_31505001 chr3R_31505001 RAL-359 2105 chr3R 31610096 31610148 chr3R 31610202 31610254 16 104 3.0 1.0 2.0 5.3 158 chr3R 31610096 intron CycG - chr3R 31610175 intron CycG - chr3R 31610254 intron CycG - chr3R_16_31610001 chr3R_31610001 RAL-359 2106 chr3R 31691516 31691564 chr3R 31696296 31696335 Doc 15 4783 3.0 6.0 4.5 2.7 4819 chr3R 31691516 intergenic not near genes chr3R 31693926 intergenic not near genes chr3R 31696335 intergenic not near genes chr3R_15_31690001 chr3R_31690001 RAL-359 2107 chr3R 31911685 31911709 chr3R 31911791 31911815 10 105 2.0 3.5 2.8 2.6 130 chr3R 31911685 intron heph - chr3R 31911750 intron heph - chr3R 31911815 intron heph - chr3R_10_31910001 chr3R_31910001 RAL-359 2108 chr3R 31931196 31931212 chr3R 31931299 31931315 4 103 5.5 6.5 6.0 0.6 119 chr3R 31931196 intron heph - chr3R 31931256 intron heph - chr3R 31931315 intron heph - chr3R_4_31930001 chr3R_31930001 RAL-359 2109 chr3R 31946020 31946044 chr3R 31946124 31946141 4 95 4.0 6.5 5.2 0.6 121 chr3R 31946020 intron heph - chr3R 31946080 intron heph - chr3R 31946141 intron heph - chr3R_4_31945001 chr3R_31945001 RAL-359 2110 chr3R 31954407 31954448 chr3R 31954510 31954545 4 96 3.5 2.5 3.0 1.0 138 chr3R 31954407 intron heph - chr3R 31954476 intron heph - chr3R 31954545 intron heph - chr3R_4_31950001 chr3R_31950001 RAL-359 2111 chr3R 31975013 31975062 chr3R 31975124 31975173 4 111 1.0 1.5 1.2 1.8 160 chr3R 31975013 intron heph - chr3R 31975093 intron heph - chr3R 31975173 intron heph - chr3R_4_31975001 chr3R_31975001 RAL-359 2112 chr3R 31997979 31998007 chr3R 32005469 32005497 blood 7 7490 3.5 3.5 3.5 1.6 7518 chr3R 31997979 intron heph - chr3R 32001738 intron heph - chr3R 32005497 intron heph - chr3R_7_32000001 chr3R_32000001 RAL-359 2113 chr4 76478 76512 chr4 81940 81975 I-element 7 5461 3.0 4.5 3.8 1.5 5497 chr4 76478 intron pan + chr4 79226 intron pan + chr4 81975 intron pan + chr4_7_75001 chr4_75001 RAL-359 2114 chr4 319975 320018 chr4 328171 328214 Stalker2 9 8195 3.5 4.0 3.8 1.9 8239 chr4 319975 3` UTR CG32850 + chr4 324094 intron CG32850 + chr4 328214 3` UTR,3` UTR CG32850 +,PMCA - chr4_9_320001 chr4_320001 RAL-359 2115 chr4 671604 671627 chr4 680186 680225 Tirant 8 8596 6.0 7.5 6.8 1.0 8621 chr4 671604 intron CG11360 + chr4 675914 intron CG11360 + chr4 680225 intron CG11360 + chr4_8_675001 chr4_675001 RAL-359 2116 chr4 959612 959653 chr4 959811 959852 17 198 3.5 7.0 5.2 2.7 240 chr4 959612 intergenic CR44030 +,CR45201 - chr4 959732 5` UTR CR44030 + chr4 959852 5` UTR CR44030 + chr4_17_955001 chr4_955001 RAL-359 2117 chr4 972486 972518 chr4 972588 972620 4 102 2.5 5.0 3.8 0.8 134 chr4 972486 intron fuss - chr4 972553 intron fuss - chr4 972620 intron fuss - chr4_4_970001 chr4_970001 RAL-359 2118 chrX 201044 201056 chrX 201123 201154 4 93 1.0 2.5 1.8 1.4 110 chrX 201044 intergenic not near genes chrX 201099 intergenic not near genes chrX 201154 intergenic not near genes chrX_4_200001 chrX_200001 RAL-359 2119 chrX 295847 295877 chrX 303476 303517 412 4 7633 1.5 3.5 2.5 1.1 7670 chrX 295847 intron CG3777 + chrX 299682 intron CG3777 + chrX 303517 intron CG3777 + chrX_4_295001 chrX_295001 RAL-359 2120 chrX 318455 318498 chrX 323560 323604 flea 16 5105 3.0 5.0 4.0 3.2 5149 chrX 318455 intron,intron CG3777 +,CG32816 - chrX 321030 intron,intron CG3777 +,CG32816 - chrX 323604 intron,intron CG3777 +,CG32816 - chrX_16_320001 chrX_320001 RAL-359 2121 chrX 367027 367069 chrX 367144 367186 5 117 2.5 1.5 2.0 1.7 159 chrX 367027 intron,5` UTR CG32816 -,yar + chrX 367106 intron CG32816 - chrX 367186 intron CG32816 - chrX_5_365001 chrX_365001 RAL-359 2122 chrX 428415 428448 chrX 434602 434653 3S18 10 6202 3.5 2.0 2.8 2.6 6238 chrX 428415 intron CG32816 - chrX 431534 intron CG32816 - chrX 434653 intron CG32816 - chrX_10_430001 chrX_430001 RAL-359 2123 chrX 449871 449920 chrX 449987 450037 9 116 3.5 4.5 4.0 1.8 166 chrX 449871 intron CG32816 - chrX 449954 intron CG32816 - chrX 450037 intron CG32816 - chrX_9_445001 chrX_445001 RAL-359 2124 chrX 547614 547663 chrX 547878 547927 16 264 4.5 3.0 3.8 3.3 313 chrX 547614 intron Appl + chrX 547770 intron Appl + chrX 547927 intron Appl + chrX_16_545001 chrX_545001 RAL-359 2125 chrX 551405 551438 chrX 558987 559013 412 5 7572 10.0 4.0 7.0 0.6 7608 chrX 551405 intron Appl + chrX 555209 intron Appl + chrX 559013 intron Appl + chrX_5_555001 chrX_555001 RAL-359 2126 chrX 561572 561601 chrX 561673 561679 4 95 1.0 2.5 1.8 1.4 107 chrX 561572 intron Appl + chrX 561626 intron Appl + chrX 561679 intron Appl + chrX_4_560001 chrX_560001 RAL-359 2127 chrX 667644 667678 chrX 667748 667782 7 104 0.5 1.5 1.0 3.5 138 chrX 667644 intergenic not near genes chrX 667713 intergenic not near genes chrX 667782 intergenic not near genes chrX_7_665001 chrX_665001 RAL-359 2128 chrX 680840 680858 chrX 680922 680961 7 100 4.0 3.0 3.5 1.6 121 chrX 680840 intergenic not near genes chrX 680900 intergenic not near genes chrX 680961 intergenic not near genes chrX_7_680001 chrX_680001 RAL-359 2129 chrX 802305 802321 chrX 802365 802404 4 76 2.5 3.0 2.8 1.1 99 chrX 802305 exon CG13359 - chrX 802354 exon CG13359 - chrX 802404 exon CG13359 - chrX_4_800001 chrX_800001 RAL-359 2130 chrX 812253 812280 chrX 817904 817931 297 10 5650 5.5 3.5 4.5 1.8 5678 chrX 812253 intron CG43867 - chrX 815092 intron CG43867 - chrX 817931 intron CG43867 - chrX_10_815001 chrX_815001 RAL-359 2131 chrX 827583 827597 chrX 835395 835409 roo 4 7812 7.5 5.0 6.2 0.6 7826 chrX 827583 intron CG43867 - chrX 831496 intron CG43867 - chrX 835409 intron CG43867 - chrX_4_830001 chrX_830001 RAL-359 2132 chrX 827599 827633 chrX 835391 835445 roo 12 7809 3.5 5.0 4.2 2.3 7846 chrX 827599 intron CG43867 - chrX 831522 intron CG43867 - chrX 835445 intron CG43867 - chrX_12_830001 chrX_830001 RAL-359 2133 chrX 906688 906705 chrX 908497 908514 S-element 5 1809 3.0 5.5 4.2 1.0 1826 chrX 906688 intron CG43867 - chrX 907601 intron CG43867 - chrX 908514 intron CG43867 - chrX_5_905001 chrX_905001 RAL-359 2134 chrX 912013 912055 chrX 912112 912164 8 101 1.0 1.0 1.0 4.0 151 chrX 912013 intron CG43867 - chrX 912088 intron CG43867 - chrX 912164 intron CG43867 - chrX_8_910001 chrX_910001 RAL-359 2135 chrX 1050560 1050582 chrX 1050640 1050664 8 91 0.0 2.5 1.2 3.6 104 chrX 1050560 intron CR44779 + chrX 1050612 intron CR44779 + chrX 1050664 intron CR44779 + chrX_8_1050001 chrX_1050001 RAL-359 2136 chrX 1051060 1051089 chrX 1051158 1051187 8 94 8.5 6.5 7.5 0.9 127 chrX 1051060 intron CR44779 + chrX 1051124 intron CR44779 + chrX 1051187 intron CR44779 + chrX_8_1050001 chrX_1050001 RAL-359 2137 chrX 1253726 1253756 chrX 1253828 1253858 4 102 1.5 3.0 2.2 1.2 132 chrX 1253726 intron Atf3 - chrX 1253792 intron Atf3 - chrX 1253858 intron Atf3 - chrX_4_1250001 chrX_1250001 RAL-359 2138 chrX 1357761 1357797 chrX 1367951 1367987 Doc 8 10189 4.0 3.0 3.5 1.8 10226 chrX 1357761 intergenic png - chrX 1362874 intergenic not near genes chrX 1367987 intergenic not near genes chrX_8_1360001 chrX_1360001 RAL-359 2139 chrX 1518029 1518061 chrX 1523438 1523482 jockey 7 5419 2.5 2.5 2.5 2.0 5453 chrX 1518029 intergenic inc + chrX 1520756 intergenic not near genes chrX 1523482 intergenic not near genes chrX_7_1520001 chrX_1520001 RAL-359 2140 chrX 1674841 1674858 chrX 1674936 1674949 4 94 6.0 2.0 4.0 0.8 108 chrX 1674841 3` UTR CG32809 - chrX 1674895 3` UTR CG32809 - chrX 1674949 3` UTR CG32809 - chrX_4_1670001 chrX_1670001 RAL-359 2141 chrX 1801349 1801382 chrX 1801706 1801739 6 352 2.0 3.0 2.5 1.7 390 chrX 1801349 intron CG42666 + chrX 1801544 intron CG42666 + chrX 1801739 intron CG42666 + chrX_6_1800001 chrX_1800001 RAL-359 2142 chrX 1930520 1930568 chrX 1938111 1938159 opus 12 7590 4.0 4.5 4.2 2.3 7639 chrX 1930520 intergenic CG11596 + chrX 1934340 intergenic not near genes chrX 1938159 3` UTR CG3857 - chrX_12_1930001 chrX_1930001 RAL-359 2143 chrX 1987468 1987510 chrX 1987592 1987629 6 123 5.5 4.0 4.8 1.0 161 chrX 1987468 intron Hr4 + chrX 1987548 intron Hr4 + chrX 1987629 intron Hr4 + chrX_6_1985001 chrX_1985001 RAL-359 2144 chrX 2254447 2254479 chrX 2254542 2254546 5 89 5.5 6.0 5.8 0.7 99 chrX 2254447 3` UTR CG3078 - chrX 2254496 3` UTR CG3078 - chrX 2254546 3` UTR CG3078 - chrX_5_2250001 chrX_2250001 RAL-359 2145 chrX 2291650 2291672 chrX 2291725 2291777 5 96 3.0 0.0 1.5 2.0 127 chrX 2291650 intron CG2865 - chrX 2291714 intron CG2865 - chrX 2291777 intron CG2865 - chrX_5_2290001 chrX_2290001 RAL-359 2146 chrX 2399826 2399861 chrX 2408198 2408234 roo 6 8368 1.5 8.0 4.8 1.0 8408 chrX 2399826 intergenic not near genes chrX 2404030 intergenic not near genes chrX 2408234 intergenic not near genes chrX_6_2400001 chrX_2400001 RAL-359 2147 chrX 2496143 2496193 chrX 2496318 2496373 15 176 1.0 3.5 2.2 4.7 230 chrX 2496143 intron trol - chrX 2496258 intron trol - chrX 2496373 intron trol - chrX_15_2495001 chrX_2495001 RAL-359 2148 chrX 2552788 2552814 chrX 2552923 2552950 4 139 6.0 1.5 3.8 0.8 162 chrX 2552788 intron Pdfr + chrX 2552869 intron Pdfr + chrX 2552950 intron Pdfr + chrX_4_2550001 chrX_2550001 RAL-359 2149 chrX 2610371 2610416 chrX 2617502 2617553 HMS-Beagle 4 7136 2.5 2.0 2.2 1.2 7182 chrX 2610371 intergenic CG8636 - chrX 2613962 intergenic not near genes chrX 2617553 intergenic Tsp3A - chrX_4_2610001 chrX_2610001 RAL-359 2150 chrX 2756951 2757002 chrX 2757062 2757113 14 110 2.5 1.0 1.8 5.0 162 chrX 2756951 intron kirre + chrX 2757032 intron kirre + chrX 2757113 intron kirre + chrX_14_2755001 chrX_2755001 RAL-359 2151 chrX 2864428 2864442 chrX 2864525 2864540 4 98 0.0 6.5 3.2 1.0 112 chrX 2864428 intron kirre + chrX 2864484 intron kirre + chrX 2864540 intron kirre + chrX_4_2860001 chrX_2860001 RAL-359 2152 chrX 2888091 2888128 chrX 2888189 2888226 8 95 6.0 4.5 5.2 1.3 135 chrX 2888091 intron kirre + chrX 2888158 intron kirre + chrX 2888226 intron kirre + chrX_8_2885001 chrX_2885001 RAL-359 2153 chrX 3031142 3031186 chrX 3031243 3031287 6 100 2.0 4.0 3.0 1.5 145 chrX 3031142 intron kirre + chrX 3031214 intron kirre + chrX 3031287 intron kirre + chrX_6_3030001 chrX_3030001 RAL-359 2154 chrX 3038716 3038769 chrX 3038824 3038877 5 101 2.5 1.0 1.8 1.8 161 chrX 3038716 intron kirre + chrX 3038796 intron kirre + chrX 3038877 intron kirre + chrX_5_3035001 chrX_3035001 RAL-359 2155 chrX 3058005 3058045 chrX 3058266 3058306 pogo 8 261 2.0 4.0 3.0 2.0 301 chrX 3058005 intron kirre + chrX 3058156 intron kirre + chrX 3058306 intron kirre + chrX_8_3055001 chrX_3055001 RAL-359 2156 chrX 3203444 3203496 chrX 3203663 3203703 12 218 2.5 6.0 4.2 2.3 259 chrX 3203444 intron dnc + chrX 3203574 intron dnc + chrX 3203703 intron dnc + chrX_12_3200001 chrX_3200001 RAL-359 2157 chrX 3243619 3243657 chrX 3243729 3243767 6 110 3.0 4.0 3.5 1.3 148 chrX 3243619 intron dnc + chrX 3243693 intron dnc + chrX 3243767 intron dnc + chrX_6_3240001 chrX_3240001 RAL-359 2158 chrX 3398127 3398159 chrX 3398225 3398260 12 100 3.0 7.0 5.0 2.0 133 chrX 3398127 intron,intron CR44999 +,CG12535 - chrX 3398194 intron,intron CR44999 +,CG12535 - chrX 3398260 intron,intron CR44999 +,CG12535 - chrX_12_3395001 chrX_3395001 RAL-359 2159 chrX 3415027 3415051 chrX 3421232 3421256 3S18 8 6204 3.0 5.5 4.2 1.5 6229 chrX 3415027 intron,intron CR44999 +,CG12535 - chrX 3418142 intron,intron CR44999 +,CG12535 - chrX 3421256 intron,intron CR44999 +,CG12535 - chrX_8_3415001 chrX_3415001 RAL-359 2160 chrX 3481721 3481772 chrX 3481816 3481868 10 95 1.0 3.5 2.2 3.1 147 chrX 3481721 intron,intron CR44999 +,CG10804 - chrX 3481794 intron,intron CR44999 +,CG10804 - chrX 3481868 intron,intron CR44999 +,CG10804 - chrX_10_3480001 chrX_3480001 RAL-359 2161 chrX 3513749 3513787 chrX 3513851 3513890 7 103 1.5 3.5 2.5 2.0 141 chrX 3513749 intron,intron CR44999 +,CG32791 - chrX 3513820 intron,intron CR44999 +,CG32791 - chrX 3513890 intron,intron CR44999 +,CG32791 - chrX_7_3510001 chrX_3510001 RAL-359 2162 chrX 3597536 3597575 chrX 3619724 3619763 roo 16 22186 5.5 2.5 4.0 3.2 22227 chrX 3597536 intron AstA-R1 + chrX 3608650 intron AstA-R1 + chrX 3619763 intron AstA-R1 + chrX_16_3605001 chrX_3605001 RAL-359 2163 chrX 3629839 3629883 chrX 3629944 3629988 9 105 1.0 1.0 1.0 4.5 149 chrX 3629839 intron AstA-R1 + chrX 3629914 intron AstA-R1 + chrX 3629988 intron AstA-R1 + chrX_9_3625001 chrX_3625001 RAL-359 2164 chrX 3713083 3713127 chrX 3713211 3713256 8 129 4.0 2.0 3.0 2.0 173 chrX 3713083 intron Rala - chrX 3713170 intron Rala - chrX 3713256 intron Rala - chrX_8_3710001 chrX_3710001 RAL-359 2165 chrX 3726758 3726780 chrX 3730175 3730197 NOF 4 3417 1.5 7.0 4.2 0.8 3439 chrX 3726758 intron tlk + chrX 3728478 intron tlk + chrX 3730197 intron tlk + chrX_4_3725001 chrX_3725001 RAL-359 2166 chrX 3842307 3842341 chrX 3842568 3842602 pogo 13 261 3.0 2.0 2.5 3.7 295 chrX 3842307 intron ec + chrX 3842454 intron ec + chrX 3842602 intron ec + chrX_13_3840001 chrX_3840001 RAL-359 2167 chrX 3866088 3866129 chrX 3866186 3866227 12 98 3.0 0.5 1.8 4.3 139 chrX 3866088 intron yin - chrX 3866158 intron yin - chrX 3866227 intron yin - chrX_12_3865001 chrX_3865001 RAL-359 2168 chrX 3881254 3881302 chrX 3881413 3881461 11 159 0.5 3.0 1.8 3.9 207 chrX 3881254 intron VhaAC39-1 + chrX 3881358 intron VhaAC39-1 + chrX 3881461 exon VhaAC39-1 + chrX_11_3880001 chrX_3880001 RAL-359 2169 chrX 3986846 3986894 chrX 3994499 3994547 412 5 7653 3.0 3.0 3.0 1.2 7701 chrX 3986846 intergenic not near genes chrX 3990696 intergenic not near genes chrX 3994547 intergenic not near genes chrX_5_3990001 chrX_3990001 RAL-359 2170 chrX 4101847 4101892 chrX 4101945 4101991 13 97 1.0 4.5 2.8 3.4 144 chrX 4101847 exon CG15375 + chrX 4101919 exon CG15375 + chrX 4101991 exon CG15375 + chrX_13_4100001 chrX_4100001 RAL-359 2171 chrX 4216324 4216337 chrX 4216423 4216430 5 98 4.0 4.5 4.2 1.0 106 chrX 4216324 intergenic not near genes chrX 4216377 intergenic CG15571 - chrX 4216430 intergenic CG15571 - chrX_5_4215001 chrX_4215001 RAL-359 2172 chrX 4240156 4240204 chrX 4240303 4240346 13 146 7.0 5.0 6.0 1.9 190 chrX 4240156 intergenic not near genes chrX 4240251 intergenic not near genes chrX 4240346 intergenic not near genes chrX_13_4240001 chrX_4240001 RAL-359 2173 chrX 4252934 4252981 chrX 4253042 4253088 15 105 1.5 6.5 4.0 3.0 154 chrX 4252934 intergenic CG15576 - chrX 4253011 intergenic CG15576 - chrX 4253088 intergenic CG15576 - chrX_15_4250001 chrX_4250001 RAL-359 2174 chrX 4324371 4324408 chrX 4324468 4324505 5 97 3.0 2.5 2.8 1.3 134 chrX 4324371 intron norpA + chrX 4324438 intron norpA + chrX 4324505 intron norpA + chrX_5_4320001 chrX_4320001 RAL-359 2175 chrX 4361427 4361446 chrX 4361526 4361545 4 99 3.0 1.0 2.0 1.3 118 chrX 4361427 intron norpA + chrX 4361486 intron norpA + chrX 4361545 intron norpA + chrX_4_4360001 chrX_4360001 RAL-359 2176 chrX 4389377 4389377 chrX 12946234 12946235 4 8556858 0.5 19.0 9.8 0.4 8556858 chrX 4389377 intron CR32773 - chrX 8667806 intergenic not near genes chrX 12946235 3` UTR fne + chrX_4_8665001 chrX_8665001 RAL-359 2177 chrX 4396975 4396996 chrX 4397080 4397101 8 105 3.5 2.0 2.8 2.1 126 chrX 4396975 intron CR32773 - chrX 4397038 intron CR32773 - chrX 4397101 intron CR32773 - chrX_8_4395001 chrX_4395001 RAL-359 2178 chrX 4397004 4397007 chrX 4397061 4397100 5 92 1.5 1.0 1.2 2.3 96 chrX 4397004 intron CR32773 - chrX 4397052 intron CR32773 - chrX 4397100 intron CR32773 - chrX_5_4395001 chrX_4395001 RAL-359 2179 chrX 4417782 4417794 chrX 4417880 4417892 4 98 0.0 0.0 0.0 4.0 110 chrX 4417782 intron,intron CR32773 -,bi + chrX 4417837 intron,intron CR32773 -,bi + chrX 4417892 intron,intron CR32773 -,bi + chrX_4_4415001 chrX_4415001 RAL-359 2180 chrX 4515828 4515855 chrX 4515926 4515953 8 98 4.0 6.0 5.0 1.3 125 chrX 4515828 intron CR32773 - chrX 4515890 intron CR32773 - chrX 4515953 intron CR32773 - chrX_8_4515001 chrX_4515001 RAL-359 2181 chrX 4575594 4575640 chrX 4575703 4575749 7 109 4.0 3.0 3.5 1.6 155 chrX 4575594 intron CR32773 - chrX 4575672 intron CR32773 - chrX 4575749 intron CR32773 - chrX_7_4575001 chrX_4575001 RAL-359 2182 chrX 4700374 4700422 chrX 4700737 4700785 jockey 7 359 1.5 4.0 2.8 1.8 411 chrX 4700374 3` UTR ctp + chrX 4700580 3` UTR ctp + chrX 4700785 3` UTR ctp + chrX_7_4700001 chrX_4700001 RAL-359 2183 chrX 4731797 4731816 chrX 4736910 4736918 jockey 4 5108 2.5 2.0 2.2 1.2 5121 chrX 4731797 intergenic not near genes chrX 4734358 intergenic not near genes chrX 4736918 intergenic not near genes chrX_4_4730001 chrX_4730001 RAL-359 2184 chrX 4744143 4744172 chrX 4744261 4744290 13 118 2.5 1.0 1.8 4.6 147 chrX 4744143 intergenic not near genes chrX 4744216 intergenic not near genes chrX 4744290 intergenic not near genes chrX_13_4740001 chrX_4740001 RAL-359 2185 chrX 4763235 4763263 chrX 4763743 4763771 Stalker4 5 508 3.0 3.0 3.0 1.2 536 chrX 4763235 intergenic not near genes chrX 4763503 intergenic not near genes chrX 4763771 intergenic not near genes chrX_5_4760001 chrX_4760001 RAL-359 2186 chrX 4763265 4763283 chrX 4763737 4763790 Stalker4 5 501 1.5 2.5 2.0 1.7 525 chrX 4763265 intergenic not near genes chrX 4763528 intergenic not near genes chrX 4763790 intergenic not near genes chrX_5_4760001 chrX_4760001 RAL-359 2187 chrX 4827966 4827995 chrX 4835357 4835385 Stalker4 6 7389 4.5 3.5 4.0 1.2 7419 chrX 4827966 intergenic not near genes chrX 4831676 intergenic not near genes chrX 4835385 intergenic not near genes chrX_6_4830001 chrX_4830001 RAL-359 2188 chrX 4878863 4878906 chrX 4878992 4879035 5 129 3.0 1.0 2.0 1.7 172 chrX 4878863 intron CG42594 + chrX 4878949 intron CG42594 + chrX 4879035 intron CG42594 + chrX_5_4875001 chrX_4875001 RAL-359 2189 chrX 4990021 4990071 chrX 4997255 4997305 roo 9 7234 2.5 4.0 3.2 2.1 7284 chrX 4990021 intron CR44833 - chrX 4993663 intron CR44833 - chrX 4997305 intron CR44833 - chrX_9_4990001 chrX_4990001 RAL-359 2190 chrX 5096262 5096288 chrX 5103847 5103873 springer 5 7585 2.0 1.0 1.5 2.0 7611 chrX 5096262 intron,intron CG15465 +,rg + chrX 5100068 intron,intron CG15465 +,rg + chrX 5103873 intron,intron CG15465 +,rg + chrX_5_5100001 chrX_5100001 RAL-359 2191 chrX 5291489 5291509 chrX 5291592 5291606 4 99 9.0 2.5 5.8 0.6 117 chrX 5291489 intergenic not near genes chrX 5291548 intergenic not near genes chrX 5291606 intergenic not near genes chrX_4_5290001 chrX_5290001 RAL-359 2192 chrX 5350283 5350313 chrX 5350412 5350440 8 125 3.5 6.5 5.0 1.3 157 chrX 5350283 intron SK + chrX 5350362 intron SK + chrX 5350440 intron SK + chrX_8_5350001 chrX_5350001 RAL-359 2193 chrX 5366284 5366333 chrX 5366432 5366481 9 148 3.0 2.5 2.8 2.4 197 chrX 5366284 intron SK + chrX 5366382 intron SK + chrX 5366481 intron SK + chrX_9_5365001 chrX_5365001 RAL-359 2194 chrX 5480520 5480553 chrX 5480618 5480651 13 94 4.5 7.5 6.0 1.9 131 chrX 5480520 intron SPR + chrX 5480586 intron SPR + chrX 5480651 intron SPR + chrX_13_5480001 chrX_5480001 RAL-359 2195 chrX 5727403 5727415 chrX 5732162 5732174 Doc 4 4759 2.5 4.5 3.5 0.9 4771 chrX 5727403 intron CG32758 - chrX 5729788 intron CG32758 - chrX 5732174 intron CG32758 - chrX_4_5725001 chrX_5725001 RAL-359 2196 chrX 5883790 5883840 chrX 5884051 5884101 pogo 8 258 2.5 4.0 3.2 1.9 311 chrX 5883790 intron CR45668 - chrX 5883946 intron CR45668 - chrX 5884101 intron CR45668 - chrX_8_5880001 chrX_5880001 RAL-359 2197 chrX 5884157 5884171 chrX 5884417 5884432 pogo 4 261 5.5 2.5 4.0 0.8 275 chrX 5884157 intron CR45668 - chrX 5884294 intron CR45668 - chrX 5884432 intron CR45668 - chrX_4_5880001 chrX_5880001 RAL-359 2198 chrX 6003270 6003301 chrX 6003371 6003397 8 100 0.0 2.5 1.2 3.6 127 chrX 6003270 intron CR44498 + chrX 6003334 intron CR44498 + chrX 6003397 intron CR44498 + chrX_8_6000001 chrX_6000001 RAL-359 2199 chrX 6009224 6009268 chrX 6009582 6009628 12 360 3.0 2.5 2.8 3.2 404 chrX 6009224 intron mab-21 - chrX 6009426 intron mab-21 - chrX 6009628 intron mab-21 - chrX_12_6005001 chrX_6005001 RAL-359 2200 chrX 6171584 6171597 chrX 6179037 6179046 Quasimodo 5 7452 3.0 2.0 2.5 1.4 7462 chrX 6171584 intron Ca-alpha1T - chrX 6175315 intron Ca-alpha1T - chrX 6179046 intron Ca-alpha1T - chrX_5_6175001 chrX_6175001 RAL-359 2201 chrX 6306532 6306581 chrX 6306629 6306655 10 94 2.0 1.5 1.8 3.6 123 chrX 6306532 3` UTR CG3823 + chrX 6306594 3` UTR CG3823 + chrX 6306655 3` UTR CG3823 + chrX_10_6305001 chrX_6305001 RAL-359 2202 chrX 6312174 6312210 chrX 6312277 6312313 9 102 3.5 5.5 4.5 1.6 139 chrX 6312174 intron CG15894 + chrX 6312244 intron CG15894 + chrX 6312313 intron CG15894 + chrX_9_6310001 chrX_6310001 RAL-359 2203 chrX 6314056 6314099 chrX 6314166 6314209 5 110 0.5 2.0 1.2 2.3 153 chrX 6314056 intron CG15894 + chrX 6314132 intron CG15894 + chrX 6314209 intron CG15894 + chrX_5_6310001 chrX_6310001 RAL-359 2204 chrX 6315169 6315209 chrX 6315267 6315307 7 98 1.5 3.0 2.2 2.2 138 chrX 6315169 intron CG15894 + chrX 6315238 intron CG15894 + chrX 6315307 intron CG15894 + chrX_7_6315001 chrX_6315001 RAL-359 2205 chrX 6392862 6392893 chrX 6397642 6397678 Doc 6 4783 6.5 6.5 6.5 0.8 4816 chrX 6392862 intergenic not near genes chrX 6395270 intergenic not near genes chrX 6397678 intergenic not near genes chrX_6_6395001 chrX_6395001 RAL-359 2206 chrX 6413557 6413569 chrX 6413969 6413980 5 428 1.0 2.5 1.8 1.8 423 chrX 6413557 intergenic not near genes chrX 6413768 intergenic not near genes chrX 6413980 intergenic not near genes chrX_5_6410001 chrX_6410001 RAL-359 2207 chrX 6445321 6445333 chrX 6451099 6451111 297 7 5778 3.5 7.0 5.2 1.1 5790 chrX 6445321 intron CG42340 - chrX 6448216 intron CG42340 - chrX 6451111 intron CG42340 - chrX_7_6445001 chrX_6445001 RAL-359 2208 chrX 6487957 6487977 chrX 6488061 6488079 4 102 2.5 5.0 3.8 0.8 122 chrX 6487957 intron CG42340 - chrX 6488018 intron CG42340 - chrX 6488079 intron CG42340 - chrX_4_6485001 chrX_6485001 RAL-359 2209 chrX 6562811 6562842 chrX 6571308 6571336 Tirant 10 8498 3.0 4.0 3.5 2.2 8525 chrX 6562811 intron CG34417 + chrX 6567074 intron CG34417 + chrX 6571336 intron CG34417 + chrX_10_6565001 chrX_6565001 RAL-359 2210 chrX 6591837 6591872 chrX 6591942 6591977 6 105 3.5 0.0 1.8 2.1 140 chrX 6591837 intron Pat1 + chrX 6591907 intron Pat1 + chrX 6591977 intron Pat1 + chrX_6_6590001 chrX_6590001 RAL-359 2211 chrX 6618446 6618470 chrX 6618544 6618568 9 98 8.0 6.0 7.0 1.1 122 chrX 6618446 intron pigs + chrX 6618507 intron pigs + chrX 6618568 intron pigs + chrX_9_6615001 chrX_6615001 RAL-359 2212 chrX 6629769 6629785 chrX 6629875 6629892 7 107 2.0 1.5 1.8 2.5 123 chrX 6629769 intron pigs + chrX 6629830 intron pigs + chrX 6629892 intron pigs + chrX_7_6625001 chrX_6625001 RAL-359 2213 chrX 6865772 6865796 chrX 6865873 6865900 4 102 4.5 4.0 4.2 0.8 128 chrX 6865772 intron CG14434 - chrX 6865836 intron CG14434 - chrX 6865900 intron CG14434 - chrX_4_6865001 chrX_6865001 RAL-359 2214 chrX 6940400 6940432 chrX 6940492 6940524 4 94 1.5 2.5 2.0 1.3 124 chrX 6940400 intron CG14431 + chrX 6940462 intron CG14431 + chrX 6940524 intron CG14431 + chrX_4_6940001 chrX_6940001 RAL-359 2215 chrX 6948370 6948406 chrX 6948469 6948505 7 99 3.0 2.5 2.8 1.8 135 chrX 6948370 intron CG14431 + chrX 6948438 intron CG14431 + chrX 6948505 intron CG14431 + chrX_7_6945001 chrX_6945001 RAL-359 2216 chrX 7023581 7023629 chrX 7030991 7031039 Tabor 6 7410 6.5 3.0 4.8 1.0 7458 chrX 7023581 intron CG12541 - chrX 7027310 intron CG12541 - chrX 7031039 intron CG12541 - chrX_6_7025001 chrX_7025001 RAL-359 2217 chrX 7125229 7125270 chrX 7134408 7134430 roo 6 9176 0.0 3.0 1.5 2.4 9201 chrX 7125229 intergenic not near genes chrX 7129830 intergenic not near genes chrX 7134430 intergenic not near genes chrX_6_7125001 chrX_7125001 RAL-359 2218 chrX 7389835 7389869 chrX 7389936 7389969 5 101 5.0 4.0 4.5 0.9 134 chrX 7389835 intron,intron CR44357 -,CG1677 - chrX 7389902 intron,intron CR44357 -,CG1677 - chrX 7389969 intron,intron CR44357 -,CG1677 - chrX_5_7385001 chrX_7385001 RAL-359 2219 chrX 7679401 7679410 chrX 7681301 7681315 4 1902 13.0 17.5 15.2 0.2 1914 chrX 7679401 3` UTR CR45667 - chrX 7680358 3` UTR CR45666 - chrX 7681315 intergenic CR45665 - chrX_4_7680001 chrX_7680001 RAL-359 2220 chrX 7679210 7679248 chrX 7681700 7681738 10 2490 21.5 16.5 19.0 0.5 2528 chrX 7679210 intergenic CR45667 -,ct + chrX 7680474 3` UTR CR45666 - chrX 7681738 intergenic CR45665 - chrX_10_7680001 chrX_7680001 RAL-359 2221 chrX 7702886 7702926 chrX 7703345 7703385 jockey 15 458 7.0 6.5 6.8 1.9 499 chrX 7702886 intron CHES-1-like - chrX 7703136 intron CHES-1-like - chrX 7703385 intron CHES-1-like - chrX_15_7700001 chrX_7700001 RAL-359 2222 chrX 7845716 7845753 chrX 7847216 7847264 hopper2 5 1508 3.5 2.0 2.8 1.3 1548 chrX 7845716 intergenic not near genes chrX 7846490 intergenic not near genes chrX 7847264 intergenic not near genes chrX_5_7845001 chrX_7845001 RAL-359 2223 chrX 7968521 7968528 chrX 7968670 7968677 5 149 0.0 5.5 2.8 1.3 156 chrX 7968521 intron sn + chrX 7968599 intron sn + chrX 7968677 intron sn + chrX_5_7965001 chrX_7965001 RAL-359 2224 chrX 8031409 8031454 chrX 8035738 8035783 Juan 6 4329 10.5 4.0 7.2 0.7 4374 chrX 8031409 intergenic not near genes chrX 8033596 intergenic not near genes chrX 8035783 3` UTR CG2233 - chrX_6_8030001 chrX_8030001 RAL-359 2225 chrX 8085558 8085602 chrX 8085664 8085708 14 106 3.0 4.0 3.5 3.1 150 chrX 8085558 intron,5` UTR CG2256 -,CR45535 + chrX 8085633 intron,5` UTR CG2256 -,CR45535 + chrX 8085708 intron,5` UTR CG2256 -,CR45535 + chrX_14_8085001 chrX_8085001 RAL-359 2226 chrX 8092273 8092317 chrX 8092378 8092415 10 104 1.0 1.0 1.0 5.0 142 chrX 8092273 intron Ubc-E2H - chrX 8092344 intron Ubc-E2H - chrX 8092415 intron Ubc-E2H - chrX_10_8090001 chrX_8090001 RAL-359 2227 chrX 8180181 8180209 chrX 8180281 8180300 5 97 1.5 4.0 2.8 1.3 119 chrX 8180181 intron sdt + chrX 8180240 intron sdt + chrX 8180300 intron sdt + chrX_5_8180001 chrX_8180001 RAL-359 2228 chrX 8180210 8180218 chrX 8180275 8180313 4 85 0.5 4.0 2.2 1.2 103 chrX 8180210 intron sdt + chrX 8180262 intron sdt + chrX 8180313 intron sdt + chrX_4_8180001 chrX_8180001 RAL-359 2229 chrX 8263757 8263788 chrX 8263863 8263894 4 106 1.5 2.0 1.8 1.4 137 chrX 8263757 intron CG1632 + chrX 8263826 intron CG1632 + chrX 8263894 intron CG1632 + chrX_4_8260001 chrX_8260001 RAL-359 2230 chrX 8509106 8509151 chrX 8509203 8509247 4 97 0.5 1.5 1.0 2.0 141 chrX 8509106 intron CG33181 + chrX 8509176 intron CG33181 + chrX 8509247 intron CG33181 + chrX_4_8505001 chrX_8505001 RAL-359 2231 chrX 8649440 8649490 chrX 8649580 8649630 16 139 1.5 4.0 2.8 4.2 190 chrX 8649440 intron oc - chrX 8649535 intron oc - chrX 8649630 intron oc - chrX_16_8645001 chrX_8645001 RAL-359 2232 chrX 8823975 8823993 chrX 8824079 8824087 6 101 0.0 3.5 1.8 2.1 112 chrX 8823975 intergenic not near genes chrX 8824031 intergenic not near genes chrX 8824087 intergenic not near genes chrX_6_8820001 chrX_8820001 RAL-359 2233 chrX 8922317 8922361 chrX 8922764 8922815 jockey 7 450 3.5 4.0 3.8 1.5 498 chrX 8922317 intron rdgA + chrX 8922566 intron rdgA + chrX 8922815 intron rdgA + chrX_7_8920001 chrX_8920001 RAL-359 2234 chrX 8927580 8927613 chrX 8929870 8929903 NOF 4 2290 5.5 9.0 7.2 0.5 2323 chrX 8927580 intron rdgA + chrX 8928742 intron rdgA + chrX 8929903 intron rdgA + chrX_4_8925001 chrX_8925001 RAL-359 2235 chrX 8948745 8948776 chrX 8956275 8956306 roo 5 7530 1.5 2.5 2.0 1.7 7561 chrX 8948745 intron rdgA + chrX 8952526 intron rdgA + chrX 8956306 intron rdgA + chrX_5_8950001 chrX_8950001 RAL-359 2236 chrX 9152068 9152101 chrX 9152171 9152204 5 103 2.5 1.5 2.0 1.7 136 chrX 9152068 intergenic dalao +,His3.3B - chrX 9152136 intergenic dalao +,His3.3B - chrX 9152204 intergenic dalao +,His3.3B - chrX_5_9150001 chrX_9150001 RAL-359 2237 chrX 9218061 9218078 chrX 9218171 9218189 5 111 7.5 0.0 3.8 1.0 128 chrX 9218061 3` UTR t - chrX 9218125 3` UTR t - chrX 9218189 3` UTR t - chrX_5_9215001 chrX_9215001 RAL-359 2238 chrX 9337924 9337970 chrX 9338036 9338082 5 107 2.0 2.0 2.0 1.7 158 chrX 9337924 intron CG34449 - chrX 9338003 intron CG34449 - chrX 9338082 exon CG34449 - chrX_5_9335001 chrX_9335001 RAL-359 2239 chrX 9436244 9436288 chrX 9436347 9436386 4 99 1.0 3.5 2.2 1.2 142 chrX 9436244 intron mgl - chrX 9436315 intron mgl - chrX 9436386 intron mgl - chrX_4_9435001 chrX_9435001 RAL-359 2240 chrX 9508121 9508157 chrX 9509659 9509694 jockey 10 1537 5.5 2.0 3.8 2.1 1573 chrX 9508121 intron CG32700 - chrX 9508908 intron CG32700 - chrX 9509694 intron CG32700 - chrX_10_9505001 chrX_9505001 RAL-359 2241 chrX 9575777 9575821 chrX 9576121 9576165 mdg3 10 342 2.0 3.0 2.5 2.9 388 chrX 9575777 intron,exon CG32699 -,CG42395 - chrX 9575971 intron,intron CG32699 -,CG42395 - chrX 9576165 intron,5` UTR CG32699 -,CG42395 - chrX_10_9575001 chrX_9575001 RAL-359 2242 chrX 9599160 9599186 chrX 9599257 9599269 8 91 6.5 5.0 5.8 1.2 109 chrX 9599160 intergenic not near genes chrX 9599214 intergenic not near genes chrX 9599269 intergenic not near genes chrX_8_9595001 chrX_9595001 RAL-359 2243 chrX 9824238 9824283 chrX 9824346 9824394 9 110 2.5 1.5 2.0 3.0 156 chrX 9824238 intron CG32698 + chrX 9824316 intron CG32698 + chrX 9824394 intron CG32698 + chrX_9_9820001 chrX_9820001 RAL-359 2244 chrX 10138197 10138237 chrX 10145721 10145761 412 11 7524 6.0 4.0 5.0 1.8 7564 chrX 10138197 intron,intron RhoU +,CR44894 - chrX 10141979 intron,intron RhoU +,CR44894 - chrX 10145761 intron,intron RhoU +,CR44894 - chrX_11_10140001 chrX_10140001 RAL-359 2245 chrX 10151925 10151937 chrX 10152007 10152034 5 89 3.5 2.0 2.8 1.3 109 chrX 10151925 intron CR44894 - chrX 10151980 intron CR44894 - chrX 10152034 intron CR44894 - chrX_5_10150001 chrX_10150001 RAL-359 2246 chrX 10154267 10154313 chrX 10154363 10154394 7 93 3.0 2.0 2.5 2.0 127 chrX 10154267 intron,intron CR44894 -,CG12645 + chrX 10154330 intron,intron CR44894 -,CG12645 + chrX 10154394 intron,exon CR44894 -,CG12645 + chrX_7_10150001 chrX_10150001 RAL-359 2247 chrX 10267306 10267328 chrX 10276476 10276498 roo 6 9170 0.0 4.5 2.2 1.9 9192 chrX 10267306 3` UTR alpha-Man-I - chrX 10271902 intron alpha-Man-I - chrX 10276498 3` UTR alpha-Man-I - chrX_6_10270001 chrX_10270001 RAL-359 2248 chrX 10306044 10306057 chrX 10306145 10306158 5 101 6.5 0.0 3.2 1.2 114 chrX 10306044 intron alpha-Man-I - chrX 10306101 intron alpha-Man-I - chrX 10306158 intron alpha-Man-I - chrX_5_10305001 chrX_10305001 RAL-359 2249 chrX 10348781 10348824 chrX 10356364 10356409 springer 4 7584 1.0 1.0 1.0 2.0 7628 chrX 10348781 intergenic snoRNA:U3:9B + chrX 10352595 intergenic not near genes chrX 10356409 intergenic l(1)G0289 - chrX_4_10350001 chrX_10350001 RAL-359 2250 chrX 10369091 10369124 chrX 10369278 10369311 7 186 4.0 1.5 2.8 1.8 220 chrX 10369091 intron CG17841 + chrX 10369201 intron CG17841 + chrX 10369311 intron CG17841 + chrX_7_10365001 chrX_10365001 RAL-359 2251 chrX 10382649 10382692 chrX 10382751 10382794 5 102 1.5 0.5 1.0 2.5 145 chrX 10382649 exon CG17841 + chrX 10382722 3` UTR CG17841 + chrX 10382794 3` UTR CG17841 + chrX_5_10380001 chrX_10380001 RAL-359 2252 chrX 10550846 10550880 chrX 10552327 10552351 hobo 5 1472 2.5 2.5 2.5 1.4 1505 chrX 10550846 intron spri - chrX 10551598 intron spri - chrX 10552351 intron spri - chrX_5_10550001 chrX_10550001 RAL-359 2253 chrX 10666430 10666465 chrX 10666617 10666652 12 186 4.0 4.0 4.0 2.4 222 chrX 10666430 intron X11Lbeta + chrX 10666541 intron X11Lbeta + chrX 10666652 intron X11Lbeta + chrX_12_10665001 chrX_10665001 RAL-359 2254 chrX 10686032 10686056 chrX 10691189 10691213 roo 8 5157 6.5 5.0 5.8 1.2 5181 chrX 10686032 intron X11Lbeta + chrX 10688622 intron X11Lbeta + chrX 10691213 intron X11Lbeta + chrX_8_10685001 chrX_10685001 RAL-359 2255 chrX 10803013 10803025 chrX 10803118 10803130 4 104 7.0 4.5 5.8 0.6 117 chrX 10803013 intron Imp - chrX 10803072 intron Imp - chrX 10803130 intron Imp - chrX_4_10800001 chrX_10800001 RAL-359 2256 chrX 10824119 10824136 chrX 10824273 10824290 6 154 6.0 2.0 4.0 1.2 171 chrX 10824119 intergenic CR45624 + chrX 10824204 intergenic CR45624 + chrX 10824290 5` UTR CR45624 + chrX_6_10820001 chrX_10820001 RAL-359 2257 chrX 10824138 10824153 chrX 10824269 10824306 4 147 5.0 1.5 3.2 1.0 168 chrX 10824138 intergenic CR45624 + chrX 10824222 intergenic CR45624 + chrX 10824306 5` UTR CR45624 + chrX_4_10820001 chrX_10820001 RAL-359 2258 chrX 10937671 10937678 chrX 10937831 10937835 4 159 4.5 1.0 2.8 1.1 164 chrX 10937671 intron Myo10A + chrX 10937753 intron Myo10A + chrX 10937835 intron Myo10A + chrX_4_10935001 chrX_10935001 RAL-359 2259 chrX 11042430 11042472 chrX 11042521 11042568 9 95 1.5 1.0 1.2 4.1 138 chrX 11042430 intergenic not near genes chrX 11042499 intergenic not near genes chrX 11042568 intergenic not near genes chrX_9_11040001 chrX_11040001 RAL-359 2260 chrX 11087850 11087885 chrX 11087958 11087999 10 113 1.5 3.5 2.5 2.9 149 chrX 11087850 intergenic not near genes chrX 11087924 intergenic not near genes chrX 11087999 intergenic not near genes chrX_10_11085001 chrX_11085001 RAL-359 2261 chrX 11095984 11096024 chrX 11103106 11103146 HMS-Beagle 8 7122 3.5 7.0 5.2 1.3 7162 chrX 11095984 intergenic not near genes chrX 11099565 intergenic not near genes chrX 11103146 intron CG42249 + chrX_8_11095001 chrX_11095001 RAL-359 2262 chrX 11109417 11109417 chrX 12946233 12946235 13 1836817 10.0 19.0 14.5 0.8 1836818 chrX 11109417 intron Hsp60 + chrX 12027826 exon Usp7 - chrX 12946235 3` UTR fne + chrX_13_12025001 chrX_12025001 RAL-359 2263 chrX 11268545 11268577 chrX 11270058 11270072 hopper2 4 1508 5.5 0.5 3.0 1.0 1527 chrX 11268545 intron CG44422 - chrX 11269308 intron CG44422 - chrX 11270072 intron CG44422 - chrX_4_11265001 chrX_11265001 RAL-359 2264 chrX 11312047 11312076 chrX 11319414 11319444 Stalker2 4 7362 2.0 3.5 2.8 1.1 7397 chrX 11312047 intergenic not near genes chrX 11315746 intergenic not near genes chrX 11319444 intergenic not near genes chrX_4_11315001 chrX_11315001 RAL-359 2265 chrX 11464787 11464834 chrX 11464886 11464933 7 98 2.5 2.0 2.2 2.2 146 chrX 11464787 intron CG43155 + chrX 11464860 intron CG43155 + chrX 11464933 intron CG43155 + chrX_7_11460001 chrX_11460001 RAL-359 2266 chrX 11535024 11535041 chrX 11541514 11541531 Burdock 6 6490 5.5 1.5 3.5 1.3 6507 chrX 11535024 intron Drak + chrX 11538278 intron Drak + chrX 11541531 intron Drak + chrX_6_11535001 chrX_11535001 RAL-359 2267 chrX 11633402 11633429 chrX 11640476 11640503 297 4 7074 5.5 3.5 4.5 0.7 7101 chrX 11633402 intron Ptp10D + chrX 11636952 intron Ptp10D + chrX 11640503 intron Ptp10D + chrX_4_11635001 chrX_11635001 RAL-359 2268 chrX 11719863 11719899 chrX 11719963 11719997 6 100 1.0 4.0 2.5 1.7 134 chrX 11719863 3` UTR prtp + chrX 11719930 intergenic prtp +,Tango10 + chrX 11719997 intergenic prtp +,Tango10 + chrX_6_11715001 chrX_11715001 RAL-359 2269 chrX 11799002 11799028 chrX 11799108 11799134 10 105 5.0 2.5 3.8 2.1 132 chrX 11799002 intron CkIIbeta + chrX 11799068 intron CkIIbeta + chrX 11799134 intron CkIIbeta + chrX_10_11795001 chrX_11795001 RAL-359 2270 chrX 11801567 11801578 chrX 11801663 11801674 4 96 5.0 3.0 4.0 0.8 107 chrX 11801567 3` UTR CkIIbeta + chrX 11801620 intergenic CkIIbeta +,Hsc70-3 - chrX 11801674 intergenic Hsc70-3 -,CkIIbeta + chrX_4_11800001 chrX_11800001 RAL-359 2271 chrX 11838608 11838634 chrX 11839238 11839259 7 626 1.5 3.0 2.2 2.2 651 chrX 11838608 intergenic not near genes chrX 11838934 intergenic not near genes chrX 11839259 intergenic Cyp28c1 + chrX_7_11835001 chrX_11835001 RAL-359 2272 chrX 12094015 12094063 chrX 12094127 12094155 6 105 3.0 4.0 3.5 1.3 140 chrX 12094015 intron,intron CR43960 +,Ten-a + chrX 12094085 intron,intron CR43960 +,Ten-a + chrX 12094155 intron,intron CR43960 +,Ten-a + chrX_6_12090001 chrX_12090001 RAL-359 2273 chrX 12168119 12168135 chrX 12173581 12173597 I-element 6 5460 3.0 0.0 1.5 2.4 5478 chrX 12168119 intron Ten-a + chrX 12170858 intron Ten-a + chrX 12173597 intron Ten-a + chrX_6_12170001 chrX_12170001 RAL-359 2274 chrX 12168137 12168154 chrX 12173575 12173616 I-element 4 5456 4.5 0.0 2.2 1.2 5479 chrX 12168137 intron Ten-a + chrX 12170876 intron Ten-a + chrX 12173616 intron Ten-a + chrX_4_12170001 chrX_12170001 RAL-359 2275 chrX 12179328 12179355 chrX 12179426 12179453 5 98 1.0 3.5 2.2 1.6 125 chrX 12179328 intron Ten-a + chrX 12179390 intron Ten-a + chrX 12179453 intron Ten-a + chrX_5_12175001 chrX_12175001 RAL-359 2276 chrX 12202756 12202795 chrX 12202859 12202898 6 103 3.0 4.5 3.8 1.2 142 chrX 12202756 intron Ten-a + chrX 12202827 intron Ten-a + chrX 12202898 intron Ten-a + chrX_6_12200001 chrX_12200001 RAL-359 2277 chrX 12375500 12375513 chrX 12375600 12375630 4 113 3.0 2.5 2.8 1.1 130 chrX 12375500 intergenic Ir11a - chrX 12375565 intergenic Ir11a - chrX 12375630 exon Ir11a - chrX_4_12375001 chrX_12375001 RAL-359 2278 chrX 12428324 12428379 chrX 12428456 12428474 8 126 4.0 3.5 3.8 1.7 150 chrX 12428324 intergenic not near genes chrX 12428399 intergenic not near genes chrX 12428474 intergenic not near genes chrX_8_12425001 chrX_12425001 RAL-359 2279 chrX 12576928 12576976 chrX 12577094 12577142 12 166 1.0 2.5 1.8 4.3 214 chrX 12576928 intron CG11138 - chrX 12577035 intron CG11138 - chrX 12577142 intron CG11138 - chrX_12_12575001 chrX_12575001 RAL-359 2280 chrX 12785417 12785430 chrX 12785514 12785527 5 97 1.0 4.0 2.5 1.4 110 chrX 12785417 intergenic Pde9 -,CG32647 - chrX 12785472 intergenic Pde9 - chrX 12785527 intergenic Pde9 - chrX_5_12785001 chrX_12785001 RAL-359 2281 chrX 12839906 12839944 chrX 12840250 12840284 8 341 2.5 2.0 2.2 2.5 378 chrX 12839906 intron Pde9 - chrX 12840095 intron Pde9 - chrX 12840284 intron Pde9 - chrX_8_12840001 chrX_12840001 RAL-359 2282 chrX 12930582 12930606 chrX 12937718 12937742 HMS-Beagle 7 7136 4.5 6.5 5.5 1.1 7160 chrX 12930582 intron fne + chrX 12934162 intron fne + chrX 12937742 intron fne + chrX_7_12930001 chrX_12930001 RAL-359 2283 chrX 11109417 11109417 chrX 12946234 12946234 5 1836817 10.0 19.0 14.5 0.3 1836817 chrX 11109417 intron Hsp60 + chrX 12027826 exon Usp7 - chrX 12946234 3` UTR fne + chrX_5_12025001 chrX_12025001 RAL-359 2284 chrX 11109417 11109417 chrX 12946235 12946235 6 1836818 10.0 19.0 14.5 0.4 1836818 chrX 11109417 intron Hsp60 + chrX 12027826 exon Usp7 - chrX 12946235 3` UTR fne + chrX_6_12025001 chrX_12025001 RAL-359 2285 chrX 12946235 12946235 chrX 19355850 19355850 5 6409615 19.0 12.5 15.8 0.3 6409615 chrX 12946235 3` UTR fne + chrX 16151042 intergenic not near genes chrX 19355850 intron kek5 + chrX_5_16150001 chrX_16150001 RAL-359 2286 chrX 12953902 12953924 chrX 12954060 12954083 4 156 0.5 6.5 3.5 0.9 181 chrX 12953902 intron hec - chrX 12953992 intron hec - chrX 12954083 intron hec - chrX_4_12950001 chrX_12950001 RAL-359 2287 chrX 12960750 12960793 chrX 12960851 12960894 10 101 5.0 2.5 3.8 2.1 144 chrX 12960750 3` UTR CG32642 + chrX 12960822 intergenic CG32642 + chrX 12960894 intergenic CG32642 + chrX_10_12960001 chrX_12960001 RAL-359 2288 chrX 13084877 13084928 chrX 13084990 13085032 7 105 0.0 3.0 1.5 2.8 155 chrX 13084877 intron hep - chrX 13084954 intron hep - chrX 13085032 intron hep - chrX_7_13080001 chrX_13080001 RAL-359 2289 chrX 13104065 13104117 chrX 13104166 13104218 8 101 3.5 0.0 1.8 2.9 153 chrX 13104065 intron CG43313 - chrX 13104142 intron CG43313 - chrX 13104218 intron CG43313 - chrX_8_13100001 chrX_13100001 RAL-359 2290 chrX 13146580 13146629 chrX 13146688 13146732 14 108 1.0 2.5 1.8 5.0 152 chrX 13146580 intron CG32645 + chrX 13146656 intron CG32645 + chrX 13146732 intron CG32645 + chrX_14_13145001 chrX_13145001 RAL-359 2291 chrX 13161682 13161720 chrX 13161779 13161817 7 97 3.5 4.0 3.8 1.5 135 chrX 13161682 3` UTR CG12096 + chrX 13161750 3` UTR,3` UTR CG12096 +,CG34411 - chrX 13161817 3` UTR,3` UTR CG12096 +,CG34411 - chrX_7_13160001 chrX_13160001 RAL-359 2292 chrX 13227333 13227369 chrX 13227432 13227468 9 99 1.0 4.5 2.8 2.4 135 chrX 13227333 intron mew - chrX 13227400 intron mew - chrX 13227468 intron mew - chrX_9_13225001 chrX_13225001 RAL-359 2293 chrX 13236886 13236901 chrX 13236991 13237006 4 105 0.0 9.5 4.8 0.7 120 chrX 13236886 intron mew - chrX 13236946 intron mew - chrX 13237006 intron mew - chrX_4_13235001 chrX_13235001 RAL-359 2294 chrX 13272160 13272181 chrX 13272257 13272277 6 96 6.0 6.0 6.0 0.9 117 chrX 13272160 intron HDAC4 - chrX 13272218 intron HDAC4 - chrX 13272277 intron HDAC4 - chrX_6_13270001 chrX_13270001 RAL-359 2295 chrX 13429472 13429492 chrX 13430613 13430661 jockey 10 1165 3.0 3.5 3.2 2.4 1189 chrX 13429472 intergenic not near genes chrX 13430066 intergenic not near genes chrX 13430661 intergenic not near genes chrX_10_13430001 chrX_13430001 RAL-359 2296 chrX 13460698 13460740 chrX 13460817 13460859 7 119 3.5 2.5 3.0 1.8 161 chrX 13460698 intron Neto + chrX 13460778 intron Neto + chrX 13460859 intron Neto + chrX_7_13460001 chrX_13460001 RAL-359 2297 chrX 13463633 13463676 chrX 13469227 13469273 mdg3 16 5596 3.5 2.5 3.0 4.0 5640 chrX 13463633 intron Neto + chrX 13466453 intron Neto + chrX 13469273 intron Neto + chrX_16_13465001 chrX_13465001 RAL-359 2298 chrX 13510223 13510244 chrX 13510660 13510690 4 451 2.0 2.5 2.2 1.2 467 chrX 13510223 intron Neto + chrX 13510456 intron Neto + chrX 13510690 intron Neto + chrX_4_13510001 chrX_13510001 RAL-359 2299 chrX 13828472 13828514 chrX 13828568 13828610 9 96 3.5 5.0 4.2 1.7 138 chrX 13828472 intron jub - chrX 13828541 intron jub - chrX 13828610 intron jub - chrX_9_13825001 chrX_13825001 RAL-359 2300 chrX 13908786 13908798 chrX 13908878 13908895 4 96 4.0 5.0 4.5 0.7 109 chrX 13908786 intron mamo - chrX 13908840 intron mamo - chrX 13908895 intron mamo - chrX_4_13905001 chrX_13905001 RAL-359 2301 chrX 13937964 13937993 chrX 13941255 13941284 I-element 6 3291 5.0 3.0 4.0 1.2 3320 chrX 13937964 intron mamo - chrX 13939624 intron mamo - chrX 13941284 intron mamo - chrX_6_13935001 chrX_13935001 RAL-359 2302 chrX 13057303 13057304 chrX 13966949 13966949 5 909645 16.5 6.0 11.2 0.4 909646 chrX 13057303 intron rad + chrX 13512126 intron Neto + chrX 13966949 intron mamo - chrX_5_13510001 chrX_13510001 RAL-359 2303 chrX 13982722 13982769 chrX 13982818 13982819 9 91 1.5 3.5 2.5 2.6 97 chrX 13982722 intron mamo - chrX 13982770 intron mamo - chrX 13982819 intron mamo - chrX_9_13980001 chrX_13980001 RAL-359 2304 chrX 14013977 14014012 chrX 14014080 14014115 6 103 4.5 3.5 4.0 1.2 138 chrX 14013977 intergenic not near genes chrX 14014046 intergenic not near genes chrX 14014115 intergenic not near genes chrX_6_14010001 chrX_14010001 RAL-359 2305 chrX 14044874 14044926 chrX 14045028 14045081 6 155 1.0 4.0 2.5 1.7 207 chrX 14044874 intergenic not near genes chrX 14044978 intergenic not near genes chrX 14045081 intergenic not near genes chrX_6_14040001 chrX_14040001 RAL-359 2306 chrX 14105008 14105052 chrX 14114179 14114223 roo 6 9165 5.0 4.0 4.5 1.1 9215 chrX 14105008 intergenic not near genes chrX 14109616 intergenic not near genes chrX 14114223 5` UTR CR44657 + chrX_6_14105001 chrX_14105001 RAL-359 2307 chrX 14122603 14122620 chrX 14122698 14122711 6 95 3.0 3.0 3.0 1.5 108 chrX 14122603 intergenic not near genes chrX 14122657 intergenic not near genes chrX 14122711 intergenic not near genes chrX_6_14120001 chrX_14120001 RAL-359 2308 chrX 14209457 14209471 chrX 14209567 14209582 8 111 5.0 2.5 3.8 1.7 125 chrX 14209457 intron,intron l(1)G0007 +,l(1)G0469 - chrX 14209520 intron,intron l(1)G0007 +,l(1)G0469 - chrX 14209582 intron,intron l(1)G0007 +,l(1)G0469 - chrX_8_14205001 chrX_14205001 RAL-359 2309 chrX 14395104 14395134 chrX 14395223 14395253 10 117 0.0 3.5 1.8 3.6 149 chrX 14395104 intron dpr8 + chrX 14395178 intron dpr8 + chrX 14395253 intron dpr8 + chrX_10_14395001 chrX_14395001 RAL-359 2310 chrX 14531349 14531376 chrX 14531458 14531485 5 107 1.5 4.0 2.8 1.3 136 chrX 14531349 intergenic not near genes chrX 14531417 intergenic not near genes chrX 14531485 intergenic not near genes chrX_5_14530001 chrX_14530001 RAL-359 2311 chrX 14544341 14544390 chrX 14544449 14544498 14 108 3.5 2.5 3.0 3.5 157 chrX 14544341 intergenic not near genes chrX 14544420 intergenic not near genes chrX 14544498 intergenic not near genes chrX_14_14540001 chrX_14540001 RAL-359 2312 chrX 14610185 14610217 chrX 14610298 14610330 10 113 4.0 2.5 3.2 2.4 145 chrX 14610185 intron NetA - chrX 14610258 intron NetA - chrX 14610330 intron NetA - chrX_10_14610001 chrX_14610001 RAL-359 2313 chrX 14636444 14636484 chrX 14641905 14641945 I-element 7 5459 4.0 2.5 3.2 1.7 5501 chrX 14636444 intron NetA - chrX 14639194 intron NetA - chrX 14641945 intron NetA - chrX_7_14635001 chrX_14635001 RAL-359 2314 chrX 14752814 14752851 chrX 14752917 14752955 11 103 3.0 4.0 3.5 2.4 141 chrX 14752814 intergenic not near genes chrX 14752884 intergenic not near genes chrX 14752955 intergenic not near genes chrX_11_14750001 chrX_14750001 RAL-359 2315 chrX 14767924 14767976 chrX 14768024 14768076 10 100 2.0 0.0 1.0 5.0 152 chrX 14767924 intergenic not near genes chrX 14768000 intergenic not near genes chrX 14768076 intergenic not near genes chrX_10_14765001 chrX_14765001 RAL-359 2316 chrX 14778016 14778054 chrX 14782833 14782871 Doc 13 4817 6.5 6.0 6.2 1.8 4855 chrX 14778016 intergenic CG5347 + chrX 14780444 intergenic not near genes chrX 14782871 intergenic Ag5r2 - chrX_13_14780001 chrX_14780001 RAL-359 2317 chrX 14936827 14936889 chrX 14946118 14946165 roo 5 9282 0.0 3.0 1.5 2.0 9338 chrX 14936827 intron pdgy - chrX 14941496 intron pdgy - chrX 14946165 intron pdgy - chrX_5_14940001 chrX_14940001 RAL-359 2318 chrX 15070163 15070309 chrX 15070276 15070424 8 115 0.0 0.0 0.0 8.0 261 chrX 15070163 3` UTR Lsd-2 - chrX 15070294 3` UTR Lsd-2 - chrX 15070424 3` UTR Lsd-2 - chrX_8_15070001 chrX_15070001 RAL-359 2319 chrX 15225381 15225425 chrX 15225494 15225538 4 113 2.0 3.5 2.8 1.1 157 chrX 15225381 intergenic CR44430 + chrX 15225460 intergenic CR44430 + chrX 15225538 5` UTR CR44430 + chrX_4_15225001 chrX_15225001 RAL-359 2320 chrX 15273732 15273737 chrX 15274877 15274919 1360 4 1170 3.0 4.0 3.5 0.9 1187 chrX 15273732 intergenic not near genes chrX 15274326 intergenic not near genes chrX 15274919 intergenic not near genes chrX_4_15270001 chrX_15270001 RAL-359 2321 chrX 15277631 15277668 chrX 15277736 15277773 6 103 0.0 3.0 1.5 2.4 142 chrX 15277631 intergenic not near genes chrX 15277702 intergenic not near genes chrX 15277773 intergenic not near genes chrX_6_15275001 chrX_15275001 RAL-359 2322 chrX 15358295 15358334 chrX 15358403 15358442 9 108 2.0 1.0 1.5 3.6 147 chrX 15358295 intron acj6 - chrX 15358368 intron acj6 - chrX 15358442 intron acj6 - chrX_9_15355001 chrX_15355001 RAL-359 2323 chrX 15374452 15374465 chrX 15374562 15374575 4 110 9.5 6.0 7.8 0.5 123 chrX 15374452 intron acj6 - chrX 15374514 intron acj6 - chrX 15374575 intron acj6 - chrX_4_15370001 chrX_15370001 RAL-359 2324 chrX 15413037 15413073 chrX 15417357 15417394 Juan 8 4321 5.5 5.5 5.5 1.2 4357 chrX 15413037 intron Cngl - chrX 15415216 intron Cngl - chrX 15417394 intron Cngl - chrX_8_15415001 chrX_15415001 RAL-359 2325 chrX 15421904 15421948 chrX 15423435 15423479 pogo 6 1530 2.5 4.5 3.5 1.3 1575 chrX 15421904 intron Cngl - chrX 15422692 intron Cngl - chrX 15423479 intron Cngl - chrX_6_15420001 chrX_15420001 RAL-359 2326 chrX 15565615 15565666 chrX 15565721 15565772 7 106 2.0 2.5 2.2 2.2 157 chrX 15565615 intergenic not near genes chrX 15565694 intergenic not near genes chrX 15565772 intergenic not near genes chrX_7_15565001 chrX_15565001 RAL-359 2327 chrX 15654859 15654882 chrX 15654955 15654978 4 96 2.0 1.0 1.5 1.6 119 chrX 15654859 intergenic not near genes chrX 15654918 intergenic not near genes chrX 15654978 intergenic not near genes chrX_4_15650001 chrX_15650001 RAL-359 2328 chrX 15681390 15681414 chrX 15681488 15681516 10 101 2.0 3.5 2.8 2.6 126 chrX 15681390 intergenic not near genes chrX 15681453 intergenic not near genes chrX 15681516 intergenic not near genes chrX_10_15680001 chrX_15680001 RAL-359 2329 chrX 15898422 15898432 chrX 15898595 15898606 5 174 7.5 1.5 4.5 0.9 184 chrX 15898422 intron shi + chrX 15898514 intron shi + chrX 15898606 intron shi + chrX_5_15895001 chrX_15895001 RAL-359 2330 chrX 16437591 16437636 chrX 16437698 16437744 6 108 2.0 1.5 1.8 2.1 153 chrX 16437591 3` UTR,3` UTR hang +,CG9947 - chrX 16437668 3` UTR,3` UTR hang +,CG9947 - chrX 16437744 3` UTR,3` UTR hang +,CG9947 - chrX_6_16435001 chrX_16435001 RAL-359 2331 chrX 16492642 16492664 chrX 16498239 16498261 mdg3 8 5597 4.0 6.0 5.0 1.3 5619 chrX 16492642 intron para - chrX 16495452 intron para - chrX 16498261 intron para - chrX_8_16495001 chrX_16495001 RAL-359 2332 chrX 16570857 16570903 chrX 16570957 16570985 6 84 1.5 2.5 2.0 2.0 128 chrX 16570857 intron CanA-14F - chrX 16570921 intron CanA-14F - chrX 16570985 intron CanA-14F - chrX_6_16570001 chrX_16570001 RAL-359 2333 chrX 16650907 16650954 chrX 16651004 16651019 4 80 1.0 0.0 0.5 2.7 112 chrX 16650907 intergenic CG32573 +,CG42512 + chrX 16650963 intergenic CG32573 +,CG42512 + chrX 16651019 intergenic CG32573 +,CG42512 + chrX_4_16650001 chrX_16650001 RAL-359 2334 chrX 16689603 16689656 chrX 16689709 16689739 5 93 1.0 1.5 1.2 2.3 136 chrX 16689603 intron Sep4 - chrX 16689671 intron Sep4 - chrX 16689739 intron Sep4 - chrX_5_16685001 chrX_16685001 RAL-359 2335 chrX 16870062 16870095 chrX 16870164 16870198 5 102 3.5 4.0 3.8 1.0 136 chrX 16870062 intron CG13003 - chrX 16870130 intron CG13003 - chrX 16870198 intron CG13003 - chrX_5_16870001 chrX_16870001 RAL-359 2336 chrX 16906539 16906586 chrX 16906637 16906684 10 98 0.5 1.5 1.0 5.0 145 chrX 16906539 intron CR44754 - chrX 16906612 intron CR44754 - chrX 16906684 intron CR44754 - chrX_10_16905001 chrX_16905001 RAL-359 2337 chrX 1053117 1053123 chrX 16983076 16983076 4 15929956 13.5 18.5 16.0 0.2 15929959 chrX 1053117 intron CR44779 + chrX 9018096 intron,intron rdgA +,CR43836 - chrX 16983076 intron CG45002 - chrX_4_9015001 chrX_9015001 RAL-359 2338 chrX 17011965 17011994 chrX 17012068 17012097 6 100 3.0 3.0 3.0 1.5 132 chrX 17011965 intron CG45002 - chrX 17012031 intron CG45002 - chrX 17012097 intron CG45002 - chrX_6_17010001 chrX_17010001 RAL-359 2339 chrX 17054152 17054202 chrX 17054379 17054429 8 227 2.5 3.0 2.8 2.1 277 chrX 17054152 intron CG45002 - chrX 17054290 intron CG45002 - chrX 17054429 intron CG45002 - chrX_8_17050001 chrX_17050001 RAL-359 2340 chrX 17061019 17061049 chrX 17061124 17061165 6 107 0.0 2.0 1.0 3.0 146 chrX 17061019 intron CG45002 - chrX 17061092 intron CG45002 - chrX 17061165 intron CG45002 - chrX_6_17060001 chrX_17060001 RAL-359 2341 chrX 17111212 17111261 chrX 17111354 17111403 6 142 0.5 1.5 1.0 3.0 191 chrX 17111212 intron CG5004 + chrX 17111308 intron CG5004 + chrX 17111403 intron CG5004 + chrX_6_17110001 chrX_17110001 RAL-359 2342 chrX 17112248 17112252 chrX 17112350 17112354 4 101 0.0 11.5 5.8 0.6 106 chrX 17112248 intron CG5004 + chrX 17112301 intron CG5004 + chrX 17112354 intron CG5004 + chrX_4_17110001 chrX_17110001 RAL-359 2343 chrX 17195200 17195225 chrX 17200304 17200329 flea 8 5104 3.0 5.0 4.0 1.6 5129 chrX 17195200 3` UTR baz + chrX 17197764 3` UTR baz + chrX 17200329 3` UTR baz + chrX_8_17195001 chrX_17195001 RAL-359 2344 chrX 17205844 17205856 chrX 17205954 17205966 6 109 3.5 6.5 5.0 1.0 122 chrX 17205844 intergenic not near genes chrX 17205905 intergenic not near genes chrX 17205966 intergenic CG32564 + chrX_6_17205001 chrX_17205001 RAL-359 2345 chrX 17221811 17221860 chrX 17221917 17221966 14 106 3.0 2.0 2.5 4.0 155 chrX 17221811 intron CG5172 + chrX 17221888 intron CG5172 + chrX 17221966 intron CG5172 + chrX_14_17220001 chrX_17220001 RAL-359 2346 chrX 17316362 17316376 chrX 17316466 17316480 6 104 6.5 0.0 3.2 1.4 118 chrX 17316362 intron B-H2 + chrX 17316421 intron B-H2 + chrX 17316480 intron B-H2 + chrX_6_17315001 chrX_17315001 RAL-359 2347 chrX 17434416 17434432 chrX 17434529 17434545 4 113 1.5 0.0 0.8 2.2 129 chrX 17434416 intron CG12994 - chrX 17434480 intron CG12994 - chrX 17434545 intron CG12994 - chrX_4_17430001 chrX_17430001 RAL-359 2348 chrX 17502329 17502371 chrX 17502429 17502471 5 100 1.0 4.0 2.5 1.4 142 chrX 17502329 intron CG43658 - chrX 17502400 intron CG43658 - chrX 17502471 intron CG43658 - chrX_5_17500001 chrX_17500001 RAL-359 2349 chrX 17536825 17536872 chrX 17536929 17536975 5 103 0.0 5.5 2.8 1.3 150 chrX 17536825 intron CG43658 - chrX 17536900 intron CG43658 - chrX 17536975 intron CG43658 - chrX_5_17535001 chrX_17535001 RAL-359 2350 chrX 17545513 17545524 chrX 17545586 17545620 5 83 1.5 3.0 2.2 1.6 107 chrX 17545513 intron CG43658 - chrX 17545566 intron CG43658 - chrX 17545620 intron CG43658 - chrX_5_17545001 chrX_17545001 RAL-359 2351 chrX 17680891 17680914 chrX 17680968 17681011 5 87 2.0 3.0 2.5 1.4 120 chrX 17680891 intron chas - chrX 17680951 intron chas - chrX 17681011 intron chas - chrX_5_17680001 chrX_17680001 RAL-359 2352 chrX 17766362 17766376 chrX 17766478 17766494 5 117 1.0 3.0 2.0 1.7 132 chrX 17766362 intergenic not near genes chrX 17766428 intergenic not near genes chrX 17766494 intergenic not near genes chrX_5_17765001 chrX_17765001 RAL-359 2353 chrX 17965727 17965735 chrX 17965824 17965832 4 97 3.0 0.0 1.5 1.6 105 chrX 17965727 intron Sh - chrX 17965780 intron Sh - chrX 17965832 intron Sh - chrX_4_17965001 chrX_17965001 RAL-359 2354 chrX 18040411 18040453 chrX 18040519 18040557 8 107 1.5 2.0 1.8 2.9 146 chrX 18040411 intron Sh - chrX 18040484 intron Sh - chrX 18040557 intron Sh - chrX_8_18040001 chrX_18040001 RAL-359 2355 chrX 18122799 18122842 chrX 18122895 18122938 11 95 2.5 5.0 3.8 2.3 139 chrX 18122799 5` UTR CR45606 + chrX 18122868 5` UTR CR45606 + chrX 18122938 intergenic CR45606 + chrX_11_18120001 chrX_18120001 RAL-359 2356 chrX 18411287 18411328 chrX 18411398 18411445 9 116 1.5 2.0 1.8 3.2 158 chrX 18411287 intergenic not near genes chrX 18411366 intergenic not near genes chrX 18411445 intergenic not near genes chrX_9_18410001 chrX_18410001 RAL-359 2357 chrX 18427370 18427404 chrX 18427795 18427835 7 429 2.0 1.5 1.8 2.5 465 chrX 18427370 intergenic CG42323 + chrX 18427602 intergenic not near genes chrX 18427835 intergenic not near genes chrX_7_18425001 chrX_18425001 RAL-359 2358 chrX 18429477 18429521 chrX 18434808 18434852 Transpac 13 5331 1.5 5.0 3.2 3.1 5375 chrX 18429477 intergenic not near genes chrX 18432164 intergenic not near genes chrX 18434852 intergenic not near genes chrX_13_18430001 chrX_18430001 RAL-359 2359 chrX 18486096 18486139 chrX 18486196 18486248 11 102 2.5 1.0 1.8 3.9 152 chrX 18486096 exon psh - chrX 18486172 intron psh - chrX 18486248 intron psh - chrX_11_18485001 chrX_18485001 RAL-359 2360 chrX 12946234 12946235 chrX 18572525 18572525 4 5626290 19.0 14.5 16.8 0.2 5626291 chrX 12946234 3` UTR fne + chrX 15759380 intron Graf - chrX 18572525 intergenic not near genes chrX_4_15755001 chrX_15755001 RAL-359 2361 chrX 18575995 18576029 chrX 18576250 18576280 9 254 4.0 1.0 2.5 2.6 285 chrX 18575995 intergenic not near genes chrX 18576138 intergenic not near genes chrX 18576280 intergenic not near genes chrX_9_18575001 chrX_18575001 RAL-359 2362 chrX 18645003 18645045 chrX 18645121 18645163 9 118 2.0 4.5 3.2 2.1 160 chrX 18645003 intron Rip11 - chrX 18645083 intron Rip11 - chrX 18645163 intron Rip11 - chrX_9_18645001 chrX_18645001 RAL-359 2363 chrX 18957055 18957094 chrX 18965738 18965776 roo 6 8683 3.0 4.0 3.5 1.3 8721 chrX 18957055 intron CG43759 + chrX 18961416 intron CG43759 + chrX 18965776 intron CG43759 + chrX_6_18960001 chrX_18960001 RAL-359 2364 chrX 19060393 19060438 chrX 19065197 19065242 Doc 10 4804 2.5 4.5 3.5 2.2 4849 chrX 19060393 intron CG14190 + chrX 19062818 intron CG14190 + chrX 19065242 intron CG14190 + chrX_10_19060001 chrX_19060001 RAL-359 2365 chrX 19073665 19073697 chrX 19073772 19073804 6 107 8.0 2.5 5.2 1.0 139 chrX 19073665 intergenic not near genes chrX 19073734 intergenic not near genes chrX 19073804 intergenic not near genes chrX_6_19070001 chrX_19070001 RAL-359 2366 chrX 19080308 19080354 chrX 19080434 19080480 10 125 5.0 3.5 4.2 1.9 172 chrX 19080308 intergenic not near genes chrX 19080394 intergenic not near genes chrX 19080480 intergenic not near genes chrX_10_19080001 chrX_19080001 RAL-359 2367 chrX 19119680 19119713 chrX 19119786 19119819 6 106 1.5 0.0 0.8 3.3 139 chrX 19119680 intergenic not near genes chrX 19119750 intergenic not near genes chrX 19119819 intergenic not near genes chrX_6_19115001 chrX_19115001 RAL-359 2368 chrX 19124425 19124461 chrX 19124529 19124570 4 103 1.5 2.0 1.8 1.4 145 chrX 19124425 intergenic CG15882 - chrX 19124498 intergenic CG15882 - chrX 19124570 intergenic CG15882 -,tgy - chrX_4_19120001 chrX_19120001 RAL-359 2369 chrX 19125678 19125718 chrX 19125827 19125867 10 149 3.5 3.0 3.2 2.4 189 chrX 19125678 intron tgy - chrX 19125772 intron tgy - chrX 19125867 intron tgy - chrX_10_19125001 chrX_19125001 RAL-359 2370 chrX 19136537 19136584 chrX 19143477 19143523 412 11 6938 2.0 1.5 1.8 3.9 6986 chrX 19136537 intergenic not near genes chrX 19140030 intergenic not near genes chrX 19143523 3` UTR RhoGAP18B - chrX_11_19140001 chrX_19140001 RAL-359 2371 chrX 19223355 19223374 chrX 19223461 19223480 10 106 6.5 6.0 6.2 1.4 125 chrX 19223355 intron CG7884 + chrX 19223418 intron CG7884 + chrX 19223480 intron CG7884 + chrX_10_19220001 chrX_19220001 RAL-359 2372 chrX 19339739 19339764 chrX 19339835 19339860 7 96 0.0 5.0 2.5 2.0 121 chrX 19339739 intron nAChRalpha7 - chrX 19339800 intron nAChRalpha7 - chrX 19339860 intron nAChRalpha7 - chrX_7_19335001 chrX_19335001 RAL-359 2373 chrX 19380139 19380180 chrX 19380400 19380441 pogo 7 261 2.5 2.0 2.2 2.2 302 chrX 19380139 intron kek5 + chrX 19380290 intron kek5 + chrX 19380441 intron kek5 + chrX_7_19380001 chrX_19380001 RAL-359 2374 chrX 19472116 19472148 chrX 19472691 19472732 jockey 4 576 2.0 0.0 1.0 2.0 616 chrX 19472116 intergenic kek5 + chrX 19472424 intergenic not near genes chrX 19472732 intergenic not near genes chrX_4_19470001 chrX_19470001 RAL-359 2375 chrX 19541410 19541435 chrX 19541510 19541535 5 100 1.5 1.5 1.5 2.0 125 chrX 19541410 intron CG32532 - chrX 19541472 intron CG32532 - chrX 19541535 intron CG32532 - chrX_5_19540001 chrX_19540001 RAL-359 2376 chrX 19593932 19593973 chrX 19594033 19594078 17 105 2.0 1.5 1.8 6.1 146 chrX 19593932 exon CG14205 + chrX 19594005 intron CG14205 + chrX 19594078 intron CG14205 + chrX_17_19590001 chrX_19590001 RAL-359 2377 chrX 19662021 19662056 chrX 19662264 19662286 5 240 4.5 4.5 4.5 0.9 265 chrX 19662021 intron CG14223 - chrX 19662154 intron CG14223 - chrX 19662286 intron CG14223 - chrX_5_19660001 chrX_19660001 RAL-359 2378 chrX 19674079 19674094 chrX 19674208 19674234 6 138 3.5 6.5 5.0 1.0 155 chrX 19674079 intron et - chrX 19674156 intron et - chrX 19674234 intron et - chrX_6_19670001 chrX_19670001 RAL-359 2379 chrX 19710066 19710097 chrX 19711857 19711883 S-element 8 1799 3.0 3.0 3.0 2.0 1817 chrX 19710066 intron meso18E - chrX 19710974 intron meso18E - chrX 19711883 intron meso18E - chrX_8_19710001 chrX_19710001 RAL-359 2380 chrX 19881442 19881484 chrX 19881543 19881585 14 100 3.5 4.0 3.8 2.9 143 chrX 19881442 intron Hers + chrX 19881514 intron Hers + chrX 19881585 intron Hers + chrX_14_19880001 chrX_19880001 RAL-359 2381 chrX 19897363 19897413 chrX 19897460 19897510 9 97 3.5 6.5 5.0 1.5 147 chrX 19897363 intron Hers + chrX 19897436 intron Hers + chrX 19897510 intron Hers + chrX_9_19895001 chrX_19895001 RAL-359 2382 chrX 20041512 20041562 chrX 20041612 20041662 12 100 4.0 1.0 2.5 3.4 150 chrX 20041512 intron Dop2R - chrX 20041587 intron Dop2R - chrX 20041662 intron Dop2R - chrX_12_20040001 chrX_20040001 RAL-359 2383 chrX 20103938 20103990 chrX 20104048 20104100 5 108 1.0 1.5 1.2 2.3 162 chrX 20103938 intergenic not near genes chrX 20104019 intergenic not near genes chrX 20104100 intergenic not near genes chrX_5_20100001 chrX_20100001 RAL-359 2384 chrX 20312863 20312906 chrX 20312961 20312999 12 97 3.5 2.5 3.0 3.0 136 chrX 20312863 intron CG1504 - chrX 20312931 intron CG1504 - chrX 20312999 intron CG1504 - chrX_12_20310001 chrX_20310001 RAL-359 2385 chrX 20320284 20320307 chrX 20320381 20320404 4 94 3.0 4.0 3.5 0.9 120 chrX 20320284 intron CG1504 - chrX 20320344 intron CG1504 - chrX 20320404 intron CG1504 - chrX_4_20320001 chrX_20320001 RAL-359 2386 chrX 20374077 20374122 chrX 20374173 20374203 6 93 0.0 3.0 1.5 2.4 126 chrX 20374077 intergenic not near genes chrX 20374140 intergenic not near genes chrX 20374203 intergenic not near genes chrX_6_20370001 chrX_20370001 RAL-359 2387 chrX 20468000 20468029 chrX 20468108 20468138 5 108 4.5 0.0 2.2 1.6 138 chrX 20468000 intron GstT3 + chrX 20468069 intron GstT3 + chrX 20468138 intron GstT3 + chrX_5_20465001 chrX_20465001 RAL-359 2388 chrX 20493915 20493929 chrX 20494091 20494110 5 180 0.0 7.5 3.8 1.0 195 chrX 20493915 intron RhoGAP19D - chrX 20494012 intron RhoGAP19D - chrX 20494110 intron RhoGAP19D - chrX_5_20490001 chrX_20490001 RAL-359 2389 chrX 20517425 20517429 chrX 20517522 20517526 4 97 4.0 3.5 3.8 0.8 101 chrX 20517425 intron Tak1 - chrX 20517476 intron Tak1 - chrX 20517526 intron Tak1 - chrX_4_20515001 chrX_20515001 RAL-359 2390 chrX 20519054 20519101 chrX 20519152 20519198 9 97 1.0 1.0 1.0 4.5 144 chrX 20519054 intron Tak1 - chrX 20519126 intron Tak1 - chrX 20519198 intron Tak1 - chrX_9_20515001 chrX_20515001 RAL-359 2391 chrX 20635431 20635444 chrX 20635617 20635630 6 186 2.0 4.0 3.0 1.5 199 chrX 20635431 intergenic not near genes chrX 20635530 intergenic not near genes chrX 20635630 intergenic not near genes chrX_6_20635001 chrX_20635001 RAL-359 2392 chrX 20637155 20637186 chrX 20637310 20637341 5 155 3.0 1.5 2.2 1.6 186 chrX 20637155 intergenic not near genes chrX 20637248 intergenic not near genes chrX 20637341 intergenic not near genes chrX_5_20635001 chrX_20635001 RAL-359 2393 chrX 20780209 20780238 chrX 20780454 20780483 8 244 0.5 4.0 2.2 2.5 274 chrX 20780209 intron,3` UTR shakB -,CG32507 - chrX 20780346 intron,3` UTR shakB -,CG32507 - chrX 20780483 intron,3` UTR shakB -,CG32507 - chrX_8_20780001 chrX_20780001 RAL-359 2394 chrX 20791543 20791813 chrX 20791663 20791909 4 114 2.0 2.0 2.0 1.3 366 chrX 20791543 intron shakB - chrX 20791726 intron shakB - chrX 20791909 intron shakB - chrX_4_20790001 chrX_20790001 RAL-359 2395 chrX 20824079 20824102 chrX 20824193 20824215 6 120 2.0 4.0 3.0 1.5 136 chrX 20824079 intron,intron shakB -,CG15450 + chrX 20824147 intron,intron shakB -,CG15450 + chrX 20824215 intron,intron shakB -,CG15450 + chrX_6_20820001 chrX_20820001 RAL-359 2396 chrX 20836718 20836748 chrX 20844340 20844370 roo 6 7622 1.5 3.0 2.2 1.9 7652 chrX 20836718 intron shakB - chrX 20840544 intron shakB - chrX 20844370 intron shakB - chrX_6_20840001 chrX_20840001 RAL-359 2397 chrX 20915030 20915057 chrX 20915221 20915248 8 191 3.0 2.0 2.5 2.3 218 chrX 20915030 intron shakB - chrX 20915139 intron shakB - chrX 20915248 intron shakB - chrX_8_20915001 chrX_20915001 RAL-359 2398 chrX 20940702 20940745 chrX 20942191 20942234 hobo 11 1488 5.0 2.0 3.5 2.4 1532 chrX 20940702 intergenic not near genes chrX 20941468 intergenic not near genes chrX 20942234 intergenic not near genes chrX_11_20940001 chrX_20940001 RAL-359 2399 chrX 20947662 20947689 chrX 20948520 20948553 4 860 1.0 3.0 2.0 1.3 891 chrX 20947662 intergenic not near genes chrX 20948108 intergenic not near genes chrX 20948553 intergenic not near genes chrX_4_20945001 chrX_20945001 RAL-359 2400 chrX 20974177 20974207 chrX 20974381 20974411 5 204 2.0 2.0 2.0 1.7 234 chrX 20974177 intergenic not near genes chrX 20974294 intergenic not near genes chrX 20974411 intergenic not near genes chrX_5_20970001 chrX_20970001 RAL-359 2401 chrX 20981010 20981041 chrX 20981133 20981164 8 123 5.0 1.5 3.2 1.9 154 chrX 20981010 intergenic not near genes chrX 20981087 intergenic not near genes chrX 20981164 intergenic not near genes chrX_8_20980001 chrX_20980001 RAL-359 2402 chrX 21061848 21061893 chrX 21062353 21062396 roo 8 503 2.5 5.0 3.8 1.7 548 chrX 21061848 intron bves + chrX 21062122 intron bves + chrX 21062396 intron,3` UTR bves +,CG32512 - chrX_8_21060001 chrX_21060001 RAL-359 2403 chrX 21086117 21086160 chrX 21087165 21087209 jockey 6 1048 3.5 5.0 4.2 1.2 1092 chrX 21086117 intergenic not near genes chrX 21086663 intergenic not near genes chrX 21087209 intergenic not near genes chrX_6_21085001 chrX_21085001 RAL-359 2404 chrX 21088045 21088072 chrX 21088176 21088224 6 142 2.5 2.0 2.2 1.9 179 chrX 21088045 intergenic not near genes chrX 21088134 intergenic not near genes chrX 21088224 intergenic not near genes chrX_6_21085001 chrX_21085001 RAL-359 2405 chrX 21092639 21092681 chrX 21092731 21092748 11 90 4.0 3.5 3.8 2.3 109 chrX 21092639 intergenic not near genes chrX 21092694 intergenic not near genes chrX 21092748 intergenic not near genes chrX_11_21090001 chrX_21090001 RAL-359 2406 chrX 21166136 21166165 chrX 21166234 21166266 4 99 1.0 1.5 1.2 1.8 130 chrX 21166136 intergenic not near genes chrX 21166201 intergenic not near genes chrX 21166266 intergenic not near genes chrX_4_21165001 chrX_21165001 RAL-359 2407 chrX 21328103 21328147 chrX 21328234 21328278 6 131 2.0 2.0 2.0 2.0 175 chrX 21328103 3` UTR CG1486 + chrX 21328190 intergenic CG1486 +,tty - chrX 21328278 intergenic CG1486 +,tty - chrX_6_21325001 chrX_21325001 RAL-359 2408 chrX 21358062 21358096 chrX 21358162 21358196 8 100 1.5 4.0 2.8 2.1 134 chrX 21358062 intergenic sol +,Sep1 + chrX 21358129 intergenic Sep1 +,sol + chrX 21358196 intergenic Sep1 +,sol + chrX_8_21355001 chrX_21355001 RAL-359 2409 chrX 21419681 21419732 chrX 21419790 21419841 12 105 1.5 4.0 2.8 3.2 160 chrX 21419681 intergenic not near genes chrX 21419761 intergenic not near genes chrX 21419841 intergenic not near genes chrX_12_21415001 chrX_21415001 RAL-359 2410 chrX 21454845 21454869 chrX 21454949 21454973 4 102 1.0 3.0 2.0 1.3 128 chrX 21454845 intron CG42343 - chrX 21454909 intron CG42343 - chrX 21454973 intron CG42343 - chrX_4_21450001 chrX_21450001 RAL-359 2411 chrX 21455200 21455240 chrX 21455399 21455446 5 204 1.5 0.0 0.8 2.8 246 chrX 21455200 intron CG42343 - chrX 21455323 intron CG42343 - chrX 21455446 intron CG42343 - chrX_5_21455001 chrX_21455001 RAL-359 2412 chrX 21458695 21458727 chrX 21464151 21464183 Ivk 11 5456 0.0 2.5 1.2 5.0 5488 chrX 21458695 intergenic not near genes chrX 21461439 intergenic not near genes chrX 21464183 intergenic not near genes chrX_11_21460001 chrX_21460001 RAL-359 2413 chrX 21474398 21474430 chrX 21474784 21474815 1731 7 385 2.0 4.0 3.0 1.8 417 chrX 21474398 intergenic not near genes chrX 21474606 intergenic not near genes chrX 21474815 intergenic not near genes chrX_7_21470001 chrX_21470001 RAL-359 2414 chrX 21516981 21517019 chrX 21517064 21517115 12 90 3.5 3.0 3.2 2.9 134 chrX 21516981 intron CR45082 - chrX 21517048 intron CR45082 - chrX 21517115 intron CR45082 - chrX_12_21515001 chrX_21515001 RAL-359 2415 chrX 21565394 21565431 chrX 21565491 21565529 7 98 2.5 4.5 3.5 1.6 135 chrX 21565394 intergenic not near genes chrX 21565462 intergenic not near genes chrX 21565529 intergenic not near genes chrX_7_21565001 chrX_21565001 RAL-359 2416 chrX 21668238 21668288 chrX 21668343 21668393 24 104 7.0 1.0 4.0 4.8 155 chrX 21668238 intergenic not near genes chrX 21668316 intergenic not near genes chrX 21668393 intergenic not near genes chrX_24_21665001 chrX_21665001 RAL-359 2417 chrX 22448251 22448281 chrX 22448410 22448440 6 159 1.5 3.5 2.5 1.7 189 chrX 22448251 intron CG14615 - chrX 22448346 intron CG14615 - chrX 22448440 intron CG14615 - chrX_6_22445001 chrX_22445001 RAL-359 2418 chrX 22522609 22522654 chrX 22525449 22525477 NOF 8 2838 1.5 2.0 1.8 2.9 2868 chrX 22522609 intron CG17600 + chrX 22524043 intron CG17600 + chrX 22525477 intron CG17600 + chrX_8_22520001 chrX_22520001 RAL-359 2419 chrX 22581510 22581548 chrX 22581613 22581651 11 103 3.0 2.5 2.8 2.9 141 chrX 22581510 intergenic not near genes chrX 22581580 intergenic not near genes chrX 22581651 intergenic not near genes chrX_11_22580001 chrX_22580001 RAL-359 2420 chrX 22628224 22628282 chrX 22628547 22628586 4 309 0.0 1.5 0.8 2.2 362 chrX 22628224 intron Cda4 - chrX 22628405 intron Cda4 - chrX 22628586 intron Cda4 - chrX_4_22625001 chrX_22625001 RAL-359 2421 chrX 22681460 22681507 chrX 22688938 22688985 HMS-Beagle2 9 7476 3.0 0.0 1.5 3.6 7525 chrX 22681460 intron CR44997 + chrX 22685222 intron CR44997 + chrX 22688985 intron CR44997 + chrX_9_22685001 chrX_22685001 RAL-359 2422 chrX 22695048 22695095 chrX 22695150 22695197 9 102 2.0 2.5 2.2 2.8 149 chrX 22695048 intron CR44997 + chrX 22695122 intron CR44997 + chrX 22695197 intron CR44997 + chrX_9_22695001 chrX_22695001 RAL-359 2423 chrX 22697487 22697511 chrX 22701799 22701828 Juan 8 4314 5.5 6.5 6.0 1.1 4341 chrX 22697487 intron CR44997 + chrX 22699658 intron CR44997 + chrX 22701828 intron CR44997 + chrX_8_22695001 chrX_22695001 RAL-359 2424 chrX 22764362 22764381 chrX 22764478 22764497 4 116 5.0 5.0 5.0 0.7 135 chrX 22764362 intron CR44997 + chrX 22764430 intron CR44997 + chrX 22764497 intron CR44997 + chrX_4_22760001 chrX_22760001 RAL-359 2425 chrX 22844520 22844528 chrX 22844627 22844634 4 106 5.5 4.0 4.8 0.7 114 chrX 22844520 intron,intron fog -,CG42346 + chrX 22844577 intron,intron fog -,CG42346 + chrX 22844634 intron,intron fog -,CG42346 + chrX_4_22840001 chrX_22840001 RAL-359 2426 chrX 22867963 22868009 chrX 22868097 22868151 5 137 0.0 0.0 0.0 5.0 188 chrX 22867963 exon CG42346 + chrX 22868057 intron CG42346 + chrX 22868151 intron CG42346 + chrX_5_22865001 chrX_22865001 RAL-359 2427 chrX 22895729 22895756 chrX 22895844 22895873 4 122 2.0 2.0 2.0 1.3 144 chrX 22895729 intergenic not near genes chrX 22895801 intergenic not near genes chrX 22895873 intergenic not near genes chrX_4_22895001 chrX_22895001 RAL-359 2428 chrX 22967371 22967493 chrX 23154542 23154690 diver 4 187178 1.0 6.0 3.5 0.9 187319 chrX 22967371 intergenic not near genes chrX 23061030 intergenic not near genes chrX 23154690 intergenic not near genes chrX_4_23060001 chrX_23060001 RAL-359 2429 chrX 22987090 22987127 chrX 22989769 22989805 Burdock 12 2678 2.0 0.0 1.0 6.0 2715 chrX 22987090 intron,intron stnA -,stnB - chrX 22988448 intron,intron stnA -,stnB - chrX 22989805 intron,intron stnA -,stnB - chrX_12_22985001 chrX_22985001 RAL-359 2430 chrX 22996293 22996337 chrX 23003547 23003582 roo 14 7250 1.5 5.5 3.5 3.1 7289 chrX 22996293 intron,intron stnA -,stnB - chrX 22999938 intron,intron stnA -,stnB - chrX 23003582 intron,intron stnA -,stnB - chrX_14_22995001 chrX_22995001 RAL-359 2431 chrY 975589 975820 chrY 975726 976005 11 111 94.0 96.0 95.0 0.1 416 chrY 975589 intergenic not near genes chrY 975797 intergenic not near genes chrY 976005 intergenic not near genes chrY_11_975001 chrY_975001 RAL-359