SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 47464 47484 chr2L 52569 52589 jockey 8 5105 3.0 0.0 1.5 3.2 5125 chr2L 47464 intron Cda5 - chr2L 50026 intron Cda5 - chr2L 52589 intron Cda5 - chr2L_8_50001 chr2L_50001 RAL-358 2 chr2L 325129 325150 chr2L 325206 325225 6 77 3.5 5.0 4.2 1.2 96 chr2L 325129 intron Plc21C + chr2L 325177 intron Plc21C + chr2L 325225 intron Plc21C + chr2L_6_325001 chr2L_325001 RAL-358 3 chr2L 467355 467365 chr2L 467453 467463 5 98 3.5 5.5 4.5 0.9 108 chr2L 467355 intron CG4297 - chr2L 467409 intron CG4297 - chr2L 467463 intron CG4297 - chr2L_5_465001 chr2L_465001 RAL-358 4 chr2L 597170 597183 chr2L 597290 597301 5 119 11.0 15.5 13.2 0.4 131 chr2L 597170 intergenic not near genes chr2L 597236 intergenic not near genes chr2L 597301 intergenic not near genes chr2L_5_595001 chr2L_595001 RAL-358 5 chr2L 686923 686947 chr2L 695963 695987 roo 5 9040 1.0 1.0 1.0 2.5 9064 chr2L 686923 intron ds - chr2L 691455 intron ds - chr2L 695987 intron ds - chr2L_5_690001 chr2L_690001 RAL-358 6 chr2L 770464 770470 chr2L 772245 772250 Bari1 5 1780 1.5 1.5 1.5 2.0 1786 chr2L 770464 intergenic not near genes chr2L 771357 intergenic not near genes chr2L 772250 intergenic CR44614 + chr2L_5_770001 chr2L_770001 RAL-358 7 chr2L 931633 931665 chr2L 931712 931744 4 79 0.5 4.0 2.2 1.2 111 chr2L 931633 intron CG4341 + chr2L 931688 intron CG4341 + chr2L 931744 intron CG4341 + chr2L_4_930001 chr2L_930001 RAL-358 8 chr2L 935390 935408 chr2L 935467 935492 4 82 0.0 0.0 0.0 4.0 102 chr2L 935390 intron CG4341 + chr2L 935441 intron CG4341 + chr2L 935492 intron CG4341 + chr2L_4_935001 chr2L_935001 RAL-358 9 chr2L 976879 976910 chr2L 984515 984546 roo 5 7636 1.0 0.0 0.5 3.3 7667 chr2L 976879 intergenic not near genes chr2L 980712 intergenic not near genes chr2L 984546 intergenic not near genes chr2L_5_980001 chr2L_980001 RAL-358 10 chr2L 989371 989388 chr2L 989458 989472 5 86 1.5 1.0 1.2 2.3 101 chr2L 989371 intron CR44801 - chr2L 989422 3` UTR CR44801 - chr2L 989472 3` UTR CR44801 - chr2L_5_985001 chr2L_985001 RAL-358 11 chr2L 1074071 1074093 chr2L 1074150 1074173 5 80 2.0 2.0 2.0 1.7 102 chr2L 1074071 intron S - chr2L 1074122 intron S - chr2L 1074173 intron S - chr2L_5_1070001 chr2L_1070001 RAL-358 12 chr2L 1261138 1261259 chr2L 1261220 1261339 12 81 0.0 0.0 0.0 12.0 201 chr2L 1261138 intron robo3 + chr2L 1261238 intron robo3 + chr2L 1261339 intron robo3 + chr2L_12_1260001 chr2L_1260001 RAL-358 13 chr2L 1287292 1287313 chr2L 1287368 1287389 4 76 2.0 1.0 1.5 1.6 97 chr2L 1287292 intron robo3 + chr2L 1287340 intron robo3 + chr2L 1287389 intron robo3 + chr2L_4_1285001 chr2L_1285001 RAL-358 14 chr2L 1301779 1301784 chr2L 1302318 1302323 gypsy 5 539 0.0 5.5 2.8 1.3 544 chr2L 1301779 intergenic not near genes chr2L 1302051 intergenic not near genes chr2L 1302323 intergenic not near genes chr2L_5_1300001 chr2L_1300001 RAL-358 15 chr2L 1305957 1305976 chr2L 1306069 1306088 5 112 2.0 0.0 1.0 2.5 131 chr2L 1305957 intergenic not near genes chr2L 1306022 intergenic not near genes chr2L 1306088 intergenic not near genes chr2L_5_1305001 chr2L_1305001 RAL-358 16 chr2L 1552684 1552687 chr2L 1552903 1552908 4 220 1.5 0.0 0.8 2.2 224 chr2L 1552684 intergenic not near genes chr2L 1552796 intergenic not near genes chr2L 1552908 intergenic not near genes chr2L_4_1550001 chr2L_1550001 RAL-358 17 chr2L 1570685 1570706 chr2L 1573557 1573578 F-element 4 2872 3.0 1.0 2.0 1.3 2893 chr2L 1570685 intron haf + chr2L 1572132 intron haf + chr2L 1573578 intron haf + chr2L_4_1570001 chr2L_1570001 RAL-358 18 chr2L 1620047 1620292 chr2L 1620161 1620368 6 89 0.0 2.5 1.2 2.7 321 chr2L 1620047 3` UTR CR44603 - chr2L 1620208 3` UTR CR44603 - chr2L 1620368 3` UTR CR44603 - chr2L_6_1620001 chr2L_1620001 RAL-358 19 chr2L 1655495 1655510 chr2L 1655689 1655704 5 194 0.0 0.0 0.0 5.0 209 chr2L 1655495 intron chinmo + chr2L 1655600 intron chinmo + chr2L 1655704 intron chinmo + chr2L_5_1655001 chr2L_1655001 RAL-358 20 chr2L 1757328 1757354 chr2L 1757407 1757433 5 79 1.5 2.0 1.8 1.8 105 chr2L 1757328 intergenic not near genes chr2L 1757380 intergenic not near genes chr2L 1757433 intergenic not near genes chr2L_5_1755001 chr2L_1755001 RAL-358 21 chr2L 1795455 1795643 chr2L 1795540 1795739 8 92 1.5 0.5 1.0 4.0 284 chr2L 1795455 intergenic not near genes chr2L 1795597 intergenic not near genes chr2L 1795739 intergenic not near genes chr2L_8_1795001 chr2L_1795001 RAL-358 22 chr2L 1901504 1901525 chr2L 1901581 1901602 4 77 2.5 4.5 3.5 0.9 98 chr2L 1901504 intron CG7337 + chr2L 1901553 intron CG7337 + chr2L 1901602 intron CG7337 + chr2L_4_1900001 chr2L_1900001 RAL-358 23 chr2L 1925491 1925500 chr2L 1925567 1925577 4 77 1.0 2.0 1.5 1.6 86 chr2L 1925491 intron CG7337 + chr2L 1925534 intron CG7337 + chr2L 1925577 intron CG7337 + chr2L_4_1925001 chr2L_1925001 RAL-358 24 chr2L 2093026 2093054 chr2L 2093279 2093306 4 252 1.5 1.0 1.2 1.8 280 chr2L 2093026 intron dpr3 - chr2L 2093166 intron dpr3 - chr2L 2093306 intron dpr3 - chr2L_4_2090001 chr2L_2090001 RAL-358 25 chr2L 2100375 2100403 chr2L 2109526 2109554 roo 8 9150 1.0 0.5 0.8 4.4 9179 chr2L 2100375 intron dpr3 - chr2L 2104964 intron dpr3 - chr2L 2109554 intron dpr3 - chr2L_8_2100001 chr2L_2100001 RAL-358 26 chr2L 2205951 2205952 chr2L 2208776 2208777 5 2825 8.0 2.0 5.0 0.8 2826 chr2L 2205951 exon CG31668 - chr2L 2207364 exon CG33124 - chr2L 2208777 intron CG33124 - chr2L_5_2205001 chr2L_2205001 RAL-358 27 chr2L 2330894 2330900 chr2L 2330983 2330989 4 89 0.0 2.0 1.0 2.0 95 chr2L 2330894 intron,intron CG9967 -,eys + chr2L 2330942 intron,intron CG9967 -,eys + chr2L 2330989 intron,intron CG9967 -,eys + chr2L_4_2330001 chr2L_2330001 RAL-358 28 chr2L 2459174 2459194 chr2L 2459269 2459289 5 95 3.5 2.0 2.8 1.3 115 chr2L 2459174 3` UTR dpp + chr2L 2459232 3` UTR dpp + chr2L 2459289 3` UTR dpp + chr2L_5_2455001 chr2L_2455001 RAL-358 29 chr2L 2503532 2503564 chr2L 2503628 2503660 10 94 0.0 1.5 0.8 5.6 128 chr2L 2503532 intergenic not near genes chr2L 2503596 intergenic not near genes chr2L 2503660 intergenic not near genes chr2L_10_2500001 chr2L_2500001 RAL-358 30 chr2L 2552739 2552775 chr2L 2552819 2552855 8 80 2.0 1.5 1.8 2.9 116 chr2L 2552739 exon CG3515 - chr2L 2552797 5` UTR CG3515 - chr2L 2552855 intergenic CG3515 - chr2L_8_2550001 chr2L_2550001 RAL-358 31 chr2L 2639141 2639172 chr2L 2639217 2639248 7 76 0.5 1.0 0.8 3.9 107 chr2L 2639141 intergenic not near genes chr2L 2639194 intergenic not near genes chr2L 2639248 intergenic not near genes chr2L_7_2635001 chr2L_2635001 RAL-358 32 chr2L 2667625 2667645 chr2L 2667703 2667724 4 78 1.5 1.0 1.2 1.8 99 chr2L 2667625 intergenic not near genes chr2L 2667674 intergenic not near genes chr2L 2667724 intergenic not near genes chr2L_4_2665001 chr2L_2665001 RAL-358 33 chr2L 2804004 2804027 chr2L 2804081 2804104 10 76 0.5 1.0 0.8 5.6 100 chr2L 2804004 intergenic not near genes chr2L 2804054 intergenic not near genes chr2L 2804104 intergenic not near genes chr2L_10_2800001 chr2L_2800001 RAL-358 34 chr2L 2933300 2933319 chr2L 2935487 2935506 pogo 7 2186 1.0 2.0 1.5 2.8 2206 chr2L 2933300 intron lilli + chr2L 2934403 intron lilli + chr2L 2935506 intron lilli + chr2L_7_2930001 chr2L_2930001 RAL-358 35 chr2L 3001603 3001634 chr2L 3001686 3001717 5 83 0.5 1.5 1.0 2.5 114 chr2L 3001603 intron CG17265 + chr2L 3001660 intron CG17265 + chr2L 3001717 intron CG17265 + chr2L_5_3000001 chr2L_3000001 RAL-358 36 chr2L 3016138 3016165 chr2L 3016216 3016242 10 78 3.0 2.5 2.8 2.6 104 chr2L 3016138 intergenic CG17265 +,CG17224 - chr2L 3016190 intergenic CG17265 +,CG17224 - chr2L 3016242 intergenic CG17265 +,CG17224 - chr2L_10_3015001 chr2L_3015001 RAL-358 37 chr2L 3125028 3125042 chr2L 3125112 3125124 5 83 0.5 1.0 0.8 2.8 96 chr2L 3125028 intron toc - chr2L 3125076 intron toc - chr2L 3125124 exon toc - chr2L_5_3125001 chr2L_3125001 RAL-358 38 chr2L 3140540 3140548 chr2L 3140618 3140627 4 78 0.5 2.0 1.2 1.8 87 chr2L 3140540 intron toc - chr2L 3140584 intron toc - chr2L 3140627 intron toc - chr2L_4_3140001 chr2L_3140001 RAL-358 39 chr2L 3192224 3192232 chr2L 3192335 3192342 5 111 2.5 2.0 2.2 1.6 118 chr2L 3192224 intron CG34393 - chr2L 3192283 intron CG34393 - chr2L 3192342 intron CG34393 - chr2L_5_3190001 chr2L_3190001 RAL-358 40 chr2L 3202768 3202770 chr2L 3210197 3210199 mdg1 4 7429 0.0 0.0 0.0 4.0 7431 chr2L 3202768 intergenic not near genes chr2L 3206484 intergenic not near genes chr2L 3210199 intergenic CR45336 + chr2L_4_3205001 chr2L_3205001 RAL-358 41 chr2L 3291240 3291252 chr2L 3291320 3291332 5 80 1.0 1.5 1.2 2.3 92 chr2L 3291240 intergenic CG9664 - chr2L 3291286 3` UTR CG9664 - chr2L 3291332 3` UTR CG9664 - chr2L_5_3290001 chr2L_3290001 RAL-358 42 chr2L 3439441 3439450 chr2L 3439528 3439537 4 87 3.5 1.5 2.5 1.1 96 chr2L 3439441 intergenic not near genes chr2L 3439489 intergenic not near genes chr2L 3439537 intergenic not near genes chr2L_4_3435001 chr2L_3435001 RAL-358 43 chr2L 3632266 3632272 chr2L 3632343 3632349 4 76 0.0 4.0 2.0 1.3 83 chr2L 3632266 intron for - chr2L 3632308 intron for - chr2L 3632349 intron for - chr2L_4_3630001 chr2L_3630001 RAL-358 44 chr2L 3649792 3649819 chr2L 3654995 3655022 copia 7 5203 0.5 2.5 1.5 2.8 5230 chr2L 3649792 intron for - chr2L 3652407 intron for - chr2L 3655022 intron for - chr2L_7_3650001 chr2L_3650001 RAL-358 45 chr2L 3663309 3663341 chr2L 3663388 3663420 7 79 1.0 0.0 0.5 4.7 111 chr2L 3663309 intron CG34340 + chr2L 3663364 intron CG34340 + chr2L 3663420 intron CG34340 + chr2L_7_3660001 chr2L_3660001 RAL-358 46 chr2L 3948068 3948078 chr2L 3948156 3948166 4 88 2.5 2.5 2.5 1.1 98 chr2L 3948068 intron fred - chr2L 3948117 intron fred - chr2L 3948166 intron fred - chr2L_4_3945001 chr2L_3945001 RAL-358 47 chr2L 3952122 3952152 chr2L 3952250 3952280 5 128 6.0 1.5 3.8 1.0 158 chr2L 3952122 intron fred - chr2L 3952201 intron fred - chr2L 3952280 intron fred - chr2L_5_3950001 chr2L_3950001 RAL-358 48 chr2L 3999185 3999193 chr2L 3999268 3999276 5 83 4.0 1.5 2.8 1.3 91 chr2L 3999185 intergenic not near genes chr2L 3999230 intergenic not near genes chr2L 3999276 intergenic not near genes chr2L_5_3995001 chr2L_3995001 RAL-358 49 chr2L 4020021 4020026 chr2L 4020096 4020102 4 75 2.0 0.5 1.2 1.8 81 chr2L 4020021 intergenic not near genes chr2L 4020062 intergenic not near genes chr2L 4020102 intergenic not near genes chr2L_4_4020001 chr2L_4020001 RAL-358 50 chr2L 4048899 4048922 chr2L 4048989 4049012 7 90 0.0 0.5 0.2 5.8 113 chr2L 4048899 intron ed + chr2L 4048956 intron ed + chr2L 4049012 intron ed + chr2L_7_4045001 chr2L_4045001 RAL-358 51 chr2L 4171504 4171532 chr2L 4171580 4171607 8 76 0.0 0.5 0.2 6.7 103 chr2L 4171504 intergenic not near genes chr2L 4171556 intergenic not near genes chr2L 4171607 intergenic not near genes chr2L_8_4170001 chr2L_4170001 RAL-358 52 chr2L 4181296 4181303 chr2L 4183928 4183935 Burdock 6 2632 2.5 4.0 3.2 1.4 2639 chr2L 4181296 intergenic not near genes chr2L 4182616 intergenic not near genes chr2L 4183935 intergenic not near genes chr2L_6_4180001 chr2L_4180001 RAL-358 53 chr2L 4595869 4595893 chr2L 4595959 4595983 6 90 2.5 1.0 1.8 2.1 114 chr2L 4595869 intron dp - chr2L 4595926 intron dp - chr2L 4595983 intron dp - chr2L_6_4595001 chr2L_4595001 RAL-358 54 chr2L 4693407 4693418 chr2L 4693574 4693585 4 167 0.5 0.0 0.2 3.3 178 chr2L 4693407 intergenic not near genes chr2L 4693496 intergenic not near genes chr2L 4693585 intergenic not near genes chr2L_4_4690001 chr2L_4690001 RAL-358 55 chr2L 4740087 4740109 chr2L 4740167 4740189 5 79 0.5 2.5 1.5 2.0 102 chr2L 4740087 intron CG15630 - chr2L 4740138 intron CG15630 - chr2L 4740189 intron CG15630 - chr2L_5_4740001 chr2L_4740001 RAL-358 56 chr2L 4747547 4747557 chr2L 4747749 4747759 6 202 0.5 2.0 1.2 2.7 212 chr2L 4747547 intron CG15630 - chr2L 4747653 intron CG15630 - chr2L 4747759 intron CG15630 - chr2L_6_4745001 chr2L_4745001 RAL-358 57 chr2L 4855298 4855327 chr2L 4855383 4855412 8 84 0.0 2.5 1.2 3.6 114 chr2L 4855298 intron pog + chr2L 4855355 intron pog + chr2L 4855412 intron pog + chr2L_8_4855001 chr2L_4855001 RAL-358 58 chr2L 4996090 4996110 chr2L 4996167 4996187 4 76 3.5 1.5 2.5 1.1 97 chr2L 4996090 intron Rtnl1 - chr2L 4996138 intron Rtnl1 - chr2L 4996187 intron Rtnl1 - chr2L_4_4995001 chr2L_4995001 RAL-358 59 chr2L 5242936 5242937 chr2L 16217660 16217660 11 10974724 15.5 11.5 13.5 0.8 10974724 chr2L 5242936 intron tkv - chr2L 10730298 3` UTR,5` UTR CG6443 +,CG17118 + chr2L 16217660 intergenic not near genes chr2L_11_10730001 chr2L_10730001 RAL-358 60 chr2L 5339046 5339061 chr2L 5339130 5339145 4 84 2.0 0.0 1.0 2.0 99 chr2L 5339046 intergenic CG12512 - chr2L 5339096 intergenic CG12512 - chr2L 5339145 3` UTR CG12512 - chr2L_4_5335001 chr2L_5335001 RAL-358 61 chr2L 5490507 5490540 chr2L 5490823 5490856 11 316 1.0 0.5 0.8 6.1 349 chr2L 5490507 intergenic not near genes chr2L 5490682 intergenic not near genes chr2L 5490856 intergenic not near genes chr2L_11_5490001 chr2L_5490001 RAL-358 62 chr2L 5573680 5573696 chr2L 5573756 5573770 4 75 4.0 0.0 2.0 1.3 90 chr2L 5573680 intergenic not near genes chr2L 5573725 intergenic not near genes chr2L 5573770 intergenic not near genes chr2L_4_5570001 chr2L_5570001 RAL-358 63 chr2L 5676901 5676916 chr2L 5676997 5677012 6 96 0.5 4.5 2.5 1.7 111 chr2L 5676901 intergenic not near genes chr2L 5676956 intergenic not near genes chr2L 5677012 intergenic not near genes chr2L_6_5675001 chr2L_5675001 RAL-358 64 chr2L 5784951 5784978 chr2L 5785034 5785061 9 83 0.5 2.0 1.2 4.1 110 chr2L 5784951 intron CG9171 - chr2L 5785006 intron CG9171 - chr2L 5785061 intron CG9171 - chr2L_9_5785001 chr2L_5785001 RAL-358 65 chr2L 5815078 5815091 chr2L 5815153 5815168 6 76 2.5 0.0 1.2 2.7 90 chr2L 5815078 intergenic not near genes chr2L 5815123 intergenic not near genes chr2L 5815168 intergenic not near genes chr2L_6_5815001 chr2L_5815001 RAL-358 66 chr2L 5895940 5895952 chr2L 5896028 5896042 8 90 3.0 1.5 2.2 2.5 102 chr2L 5895940 intergenic not near genes chr2L 5895991 intergenic not near genes chr2L 5896042 intergenic not near genes chr2L_8_5895001 chr2L_5895001 RAL-358 67 chr2L 5989036 5989064 chr2L 5989112 5989140 5 76 2.5 0.0 1.2 2.3 104 chr2L 5989036 intergenic ifc +,lid - chr2L 5989088 intergenic ifc +,lid - chr2L 5989140 intergenic lid -,ifc + chr2L_5_5985001 chr2L_5985001 RAL-358 68 chr2L 5993335 5993360 chr2L 5993426 5993451 6 91 4.5 4.0 4.2 1.2 116 chr2L 5993335 exon lid - chr2L 5993393 intron lid - chr2L 5993451 intron lid - chr2L_6_5990001 chr2L_5990001 RAL-358 69 chr2L 6018233 6018325 chr2L 6018310 6018448 11 90 0.0 0.0 0.0 11.0 215 chr2L 6018233 intron H2.0 - chr2L 6018340 intron H2.0 - chr2L 6018448 intron H2.0 - chr2L_11_6015001 chr2L_6015001 RAL-358 70 chr2L 6242861 6242874 chr2L 6242945 6242958 5 84 1.0 0.5 0.8 2.8 97 chr2L 6242861 intergenic not near genes chr2L 6242910 intergenic not near genes chr2L 6242958 intergenic not near genes chr2L_5_6240001 chr2L_6240001 RAL-358 71 chr2L 6283942 6283979 chr2L 6284053 6284090 4 111 0.0 0.0 0.0 4.0 148 chr2L 6283942 intron Ddr + chr2L 6284016 intron Ddr + chr2L 6284090 intron Ddr + chr2L_4_6280001 chr2L_6280001 RAL-358 72 chr2L 6318745 6318760 chr2L 6318899 6318914 4 154 2.5 1.5 2.0 1.3 169 chr2L 6318745 intron Ddr + chr2L 6318830 intron Ddr + chr2L 6318914 intron Ddr + chr2L_4_6315001 chr2L_6315001 RAL-358 73 chr2L 6426861 6426887 chr2L 6445120 6445147 roo 11 18260 1.0 1.5 1.2 5.0 18286 chr2L 6426861 3` UTR CG9527 - chr2L 6436004 intron CG9527 - chr2L 6445147 exon CG9527 - chr2L_11_6435001 chr2L_6435001 RAL-358 74 chr2L 6564850 6564882 chr2L 6564943 6564974 4 93 1.5 1.0 1.2 1.8 124 chr2L 6564850 3` UTR CG13766 - chr2L 6564912 3` UTR CG13766 - chr2L 6564974 3` UTR CG13766 - chr2L_4_6560001 chr2L_6560001 RAL-358 75 chr2L 6799588 6799620 chr2L 6799678 6799710 6 90 0.5 0.5 0.5 4.0 122 chr2L 6799588 5` UTR CR43610 + chr2L 6799649 intergenic CR43610 +,CG17376 - chr2L 6799710 intergenic CR43610 +,CG17376 - chr2L_6_6795001 chr2L_6795001 RAL-358 76 chr2L 6868115 6868135 chr2L 6868216 6868236 5 100 2.0 1.5 1.8 1.8 121 chr2L 6868115 intron Nha1 - chr2L 6868176 intron Nha1 - chr2L 6868236 intron Nha1 - chr2L_5_6865001 chr2L_6865001 RAL-358 77 chr2L 6876779 6876804 chr2L 6882968 6882995 diver 7 6191 1.5 2.0 1.8 2.5 6216 chr2L 6876779 intron Nlg2 + chr2L 6879887 intron Nlg2 + chr2L 6882995 intron Nlg2 + chr2L_7_6875001 chr2L_6875001 RAL-358 78 chr2L 7111774 7111784 chr2L 7111860 7111870 4 86 2.0 0.0 1.0 2.0 96 chr2L 7111774 intron Pvf3 - chr2L 7111822 intron Pvf3 - chr2L 7111870 intron Pvf3 - chr2L_4_7110001 chr2L_7110001 RAL-358 79 chr2L 7125794 7125812 chr2L 7125909 7125928 4 116 0.5 0.5 0.5 2.7 134 chr2L 7125794 intron Pvf3 - chr2L 7125861 intron Pvf3 - chr2L 7125928 intron Pvf3 - chr2L_4_7125001 chr2L_7125001 RAL-358 80 chr2L 7201002 7201025 chr2L 7201082 7201106 4 80 0.5 3.0 1.8 1.4 104 chr2L 7201002 intron CG4502 - chr2L 7201054 intron CG4502 - chr2L 7201106 intron CG4502 - chr2L_4_7200001 chr2L_7200001 RAL-358 81 chr2L 7249342 7249370 chr2L 7249423 7249451 6 80 2.5 1.5 2.0 2.0 109 chr2L 7249342 5` UTR Ndae1 - chr2L 7249396 intergenic Ndae1 - chr2L 7249451 intergenic Ndae1 - chr2L_6_7245001 chr2L_7245001 RAL-358 82 chr2L 7282565 7282571 chr2L 7282643 7282650 4 78 3.5 4.0 3.8 0.8 85 chr2L 7282565 intergenic not near genes chr2L 7282608 intergenic not near genes chr2L 7282650 intergenic not near genes chr2L_4_7280001 chr2L_7280001 RAL-358 83 chr2L 7363524 7363556 chr2L 7363602 7363634 7 78 1.0 1.5 1.2 3.2 110 chr2L 7363524 5` UTR Wnt10 + chr2L 7363579 5` UTR Wnt10 + chr2L 7363634 5` UTR Wnt10 + chr2L_7_7360001 chr2L_7360001 RAL-358 84 chr2L 7399306 7399334 chr2L 7399678 7399705 4 372 2.0 1.0 1.5 1.6 399 chr2L 7399306 intergenic not near genes chr2L 7399506 intergenic not near genes chr2L 7399705 intergenic not near genes chr2L_4_7395001 chr2L_7395001 RAL-358 85 chr2L 7449745 7449775 chr2L 7449822 7449852 10 76 3.5 1.0 2.2 3.1 107 chr2L 7449745 5` UTR santa-maria - chr2L 7449798 5` UTR santa-maria - chr2L 7449852 5` UTR santa-maria - chr2L_10_7445001 chr2L_7445001 RAL-358 86 chr2L 7579889 7579915 chr2L 7579971 7579997 11 82 1.5 3.0 2.2 3.4 108 chr2L 7579889 intergenic not near genes chr2L 7579943 intergenic not near genes chr2L 7579997 intergenic not near genes chr2L_11_7575001 chr2L_7575001 RAL-358 87 chr2L 7685508 7685519 chr2L 7685586 7685597 6 78 2.5 3.0 2.8 1.6 89 chr2L 7685508 intron Myo28B1 + chr2L 7685552 intron Myo28B1 + chr2L 7685597 intron Myo28B1 + chr2L_6_7685001 chr2L_7685001 RAL-358 88 chr2L 7769804 7769833 chr2L 7769883 7769912 6 78 1.5 2.5 2.0 2.0 108 chr2L 7769804 intron CG7191 + chr2L 7769858 intron CG7191 + chr2L 7769912 intron CG7191 + chr2L_6_7765001 chr2L_7765001 RAL-358 89 chr2L 7867566 7867583 chr2L 7867660 7867677 5 94 2.5 2.0 2.2 1.6 111 chr2L 7867566 intron Proc - chr2L 7867622 intron Proc - chr2L 7867677 intron Proc - chr2L_5_7865001 chr2L_7865001 RAL-358 90 chr2L 7921104 7921108 chr2L 7921190 7921195 6 86 4.0 1.5 2.8 1.6 91 chr2L 7921104 intron Snoo - chr2L 7921150 intron Snoo - chr2L 7921195 intron Snoo - chr2L_6_7920001 chr2L_7920001 RAL-358 91 chr2L 7922745 7922770 chr2L 7922826 7922851 6 81 2.0 1.0 1.5 2.4 106 chr2L 7922745 intron Snoo - chr2L 7922798 intron Snoo - chr2L 7922851 intron Snoo - chr2L_6_7920001 chr2L_7920001 RAL-358 92 chr2L 8044097 8044125 chr2L 8044176 8044204 6 79 2.5 2.0 2.2 1.9 107 chr2L 8044097 intron CG7466 + chr2L 8044150 intron CG7466 + chr2L 8044204 intron CG7466 + chr2L_6_8040001 chr2L_8040001 RAL-358 93 chr2L 8128032 8128059 chr2L 8128115 8128142 6 83 5.0 2.0 3.5 1.3 110 chr2L 8128032 intron CG8668 + chr2L 8128087 intron CG8668 + chr2L 8128142 intron CG8668 + chr2L_6_8125001 chr2L_8125001 RAL-358 94 chr2L 8271628 8271641 chr2L 8271704 8271717 5 76 0.0 1.5 0.8 2.8 89 chr2L 8271628 intron Btk29A - chr2L 8271672 intron Btk29A - chr2L 8271717 intron Btk29A - chr2L_5_8270001 chr2L_8270001 RAL-358 95 chr2L 8336540 8336548 chr2L 8336625 8336633 7 85 1.5 5.5 3.5 1.6 93 chr2L 8336540 intergenic not near genes chr2L 8336586 intergenic not near genes chr2L 8336633 intergenic not near genes chr2L_7_8335001 chr2L_8335001 RAL-358 96 chr2L 8384916 8384927 chr2L 8384998 8385009 9 82 1.5 3.0 2.2 2.8 93 chr2L 8384916 intron CG13384 + chr2L 8384962 intron CG13384 + chr2L 8385009 5` UTR CG13384 + chr2L_9_8380001 chr2L_8380001 RAL-358 97 chr2L 8411790 8411811 chr2L 8411942 8411963 9 152 0.5 0.5 0.5 6.0 173 chr2L 8411790 5` UTR CG13397 - chr2L 8411876 intergenic CG13397 -,CG13398 - chr2L 8411963 intergenic CG13397 -,CG13398 - chr2L_9_8410001 chr2L_8410001 RAL-358 98 chr2L 8443662 8443682 chr2L 8448417 8448437 7 4755 22.5 16.0 19.2 0.3 4775 chr2L 8443662 exon CG31897 + chr2L 8446050 3` UTR U26 - chr2L 8448437 exon U26 - chr2L_7_8445001 chr2L_8445001 RAL-358 99 chr2L 8452422 8452452 chr2L 8461593 8461623 roo 8 9170 3.0 3.5 3.2 1.9 9201 chr2L 8452422 intron fu12 - chr2L 8457022 intron fu12 - chr2L 8461623 intron fu12 - chr2L_8_8455001 chr2L_8455001 RAL-358 100 chr2L 8508836 8508864 chr2L 8509052 8509080 4 216 1.0 0.0 0.5 2.7 244 chr2L 8508836 intergenic CG13096 - chr2L 8508958 intergenic CG13096 - chr2L 8509080 3` UTR CG13096 - chr2L_4_8505001 chr2L_8505001 RAL-358 101 chr2L 8723129 8723144 chr2L 8731506 8731521 Tirant 5 8377 1.5 2.0 1.8 1.8 8392 chr2L 8723129 intron raw - chr2L 8727325 intron raw - chr2L 8731521 intron raw - chr2L_5_8725001 chr2L_8725001 RAL-358 102 chr2L 8799804 8799831 chr2L 8799920 8799947 4 116 2.0 2.0 2.0 1.3 143 chr2L 8799804 intergenic not near genes chr2L 8799876 intergenic not near genes chr2L 8799947 intergenic not near genes chr2L_4_8795001 chr2L_8795001 RAL-358 103 chr2L 8894998 8895018 chr2L 8895076 8895096 5 78 1.0 1.5 1.2 2.3 98 chr2L 8894998 intergenic not near genes chr2L 8895047 intergenic not near genes chr2L 8895096 intergenic not near genes chr2L_5_8895001 chr2L_8895001 RAL-358 104 chr2L 8895549 8895575 chr2L 8895925 8895951 5 376 1.5 0.0 0.8 2.8 402 chr2L 8895549 intergenic not near genes chr2L 8895750 intergenic not near genes chr2L 8895951 intergenic not near genes chr2L_5_8895001 chr2L_8895001 RAL-358 105 chr2L 8990396 8990414 chr2L 8990474 8990492 4 78 0.5 3.5 2.0 1.3 96 chr2L 8990396 intergenic not near genes chr2L 8990444 intergenic not near genes chr2L 8990492 intergenic not near genes chr2L_4_8990001 chr2L_8990001 RAL-358 106 chr2L 9031393 9031409 chr2L 9031470 9031486 7 77 0.0 0.0 0.0 7.0 93 chr2L 9031393 intron,intron CG9582 -,CR44352 - chr2L 9031440 intron,intron CG9582 -,CR44352 - chr2L 9031486 intron,intron CG9582 -,CR44352 - chr2L_7_9030001 chr2L_9030001 RAL-358 107 chr2L 9068196 9068210 chr2L 9068273 9068287 5 77 0.5 1.5 1.0 2.5 91 chr2L 9068196 intron CG31708 - chr2L 9068242 intron CG31708 - chr2L 9068287 intron CG31708 - chr2L_5_9065001 chr2L_9065001 RAL-358 108 chr2L 9073270 9073294 chr2L 9073356 9073380 5 86 0.0 3.5 1.8 1.8 110 chr2L 9073270 intergenic not near genes chr2L 9073325 intergenic not near genes chr2L 9073380 intergenic not near genes chr2L_5_9070001 chr2L_9070001 RAL-358 109 chr2L 9084338 9084339 chr2L 16217659 16217660 10 7133321 7.5 11.5 9.5 1.0 7133322 chr2L 9084338 intron Toll-4 + chr2L 12650999 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_10_12650001 chr2L_12650001 RAL-358 110 chr2L 9270750 9270764 chr2L 9270844 9270859 8 94 2.5 2.0 2.2 2.5 109 chr2L 9270750 intron Ggamma30A + chr2L 9270804 intron Ggamma30A + chr2L 9270859 intron Ggamma30A + chr2L_8_9270001 chr2L_9270001 RAL-358 111 chr2L 9303365 9303490 chr2L 9303468 9303567 7 89 0.0 0.0 0.0 7.0 202 chr2L 9303365 intergenic not near genes chr2L 9303466 intergenic not near genes chr2L 9303567 intergenic not near genes chr2L_7_9300001 chr2L_9300001 RAL-358 112 chr2L 9355813 9355839 chr2L 9356439 9356463 9 626 2.0 3.0 2.5 2.6 650 chr2L 9355813 intergenic not near genes chr2L 9356138 intergenic not near genes chr2L 9356463 intergenic not near genes chr2L_9_9355001 chr2L_9355001 RAL-358 113 chr2L 9393498 9393530 chr2L 9396465 9396497 jockey 5 2967 3.0 4.5 3.8 1.0 2999 chr2L 9393498 intron Shawl - chr2L 9394998 intron Shawl - chr2L 9396497 intron Shawl - chr2L_5_9390001 chr2L_9390001 RAL-358 114 chr2L 9428511 9428525 chr2L 9428590 9428604 4 79 1.0 0.5 0.8 2.2 93 chr2L 9428511 3` UTR CG42847 + chr2L 9428558 3` UTR CG42847 + chr2L 9428604 3` UTR CG42847 + chr2L_4_9425001 chr2L_9425001 RAL-358 115 chr2L 9499855 9499882 chr2L 9500139 9500166 6 284 1.5 0.0 0.8 3.3 311 chr2L 9499855 intron CG33298 + chr2L 9500010 intron CG33298 + chr2L 9500166 intron CG33298 + chr2L_6_9500001 chr2L_9500001 RAL-358 116 chr2L 9686352 9686381 chr2L 9686435 9686464 4 84 1.5 1.0 1.2 1.8 112 chr2L 9686352 intron Pka-C1 - chr2L 9686408 intron Pka-C1 - chr2L 9686464 intron Pka-C1 - chr2L_4_9685001 chr2L_9685001 RAL-358 117 chr2L 9783342 9783375 chr2L 9783499 9783529 10 156 0.0 1.0 0.5 6.7 187 chr2L 9783342 intron IP3K1 + chr2L 9783436 intron IP3K1 + chr2L 9783529 intron IP3K1 + chr2L_10_9780001 chr2L_9780001 RAL-358 118 chr2L 9831217 9831237 chr2L 9831294 9831314 11 77 6.5 0.5 3.5 2.4 97 chr2L 9831217 intron nAChRalpha6 - chr2L 9831266 intron nAChRalpha6 - chr2L 9831314 intron nAChRalpha6 - chr2L_11_9830001 chr2L_9830001 RAL-358 119 chr2L 9973726 9973757 chr2L 9980844 9980876 HMS-Beagle 9 7119 1.5 2.0 1.8 3.2 7150 chr2L 9973726 intergenic not near genes chr2L 9977301 intergenic not near genes chr2L 9980876 intergenic not near genes chr2L_9_9975001 chr2L_9975001 RAL-358 120 chr2L 9982040 9982210 chr2L 9982119 9982312 4 96 0.0 0.5 0.2 3.3 272 chr2L 9982040 intergenic not near genes chr2L 9982176 intergenic not near genes chr2L 9982312 intergenic not near genes chr2L_4_9980001 chr2L_9980001 RAL-358 121 chr2L 10023070 10023100 chr2L 10023154 10023185 7 85 0.0 2.0 1.0 3.5 115 chr2L 10023070 intergenic not near genes chr2L 10023128 intergenic not near genes chr2L 10023185 intergenic not near genes chr2L_7_10020001 chr2L_10020001 RAL-358 122 chr2L 10278022 10278044 chr2L 10278102 10278124 4 80 1.0 1.0 1.0 2.0 102 chr2L 10278022 intron Utx - chr2L 10278073 intron Utx - chr2L 10278124 intron Utx - chr2L_4_10275001 chr2L_10275001 RAL-358 123 chr2L 10421276 10421312 chr2L 10421364 10421400 4 88 2.5 0.5 1.5 1.6 124 chr2L 10421276 exon pie - chr2L 10421338 exon pie - chr2L 10421400 exon pie - chr2L_4_10420001 chr2L_10420001 RAL-358 124 chr2L 10531612 10531644 chr2L 10531703 10531736 6 92 0.0 0.0 0.0 6.0 124 chr2L 10531612 3` UTR Lip4 + chr2L 10531674 3` UTR Lip4 + chr2L 10531736 3` UTR Lip4 + chr2L_6_10530001 chr2L_10530001 RAL-358 125 chr2L 10540871 10540879 chr2L 10540949 10540957 4 78 1.5 4.5 3.0 1.0 86 chr2L 10540871 intergenic not near genes chr2L 10540914 intergenic not near genes chr2L 10540957 intergenic not near genes chr2L_4_10540001 chr2L_10540001 RAL-358 126 chr2L 10592846 10592874 chr2L 10600508 10600536 opus 5 7662 1.0 3.0 2.0 1.7 7690 chr2L 10592846 intron Trim9 + chr2L 10596691 intron Trim9 + chr2L 10600536 intron Trim9 + chr2L_5_10595001 chr2L_10595001 RAL-358 127 chr2L 10636208 10636227 chr2L 10636347 10636366 7 139 0.0 2.0 1.0 3.5 158 chr2L 10636208 intron CG7329 - chr2L 10636287 intron CG7329 - chr2L 10636366 intron CG7329 - chr2L_7_10635001 chr2L_10635001 RAL-358 128 chr2L 10640649 10640672 chr2L 10640738 10640761 6 89 3.0 1.5 2.2 1.9 112 chr2L 10640649 exon CG31872 + chr2L 10640705 exon CG31872 + chr2L 10640761 exon CG31872 + chr2L_6_10640001 chr2L_10640001 RAL-358 129 chr2L 10704918 10704930 chr2L 10705013 10705025 7 94 1.0 0.5 0.8 3.9 107 chr2L 10704918 intron,3` UTR Lip2 -,CG6415 + chr2L 10704972 intron Lip2 - chr2L 10705025 intron Lip2 - chr2L_7_10700001 chr2L_10700001 RAL-358 130 chr2L 10727285 10727309 chr2L 10727396 10727420 4 110 1.5 0.0 0.8 2.2 135 chr2L 10727285 intron CG6431 + chr2L 10727352 intron CG6431 + chr2L 10727420 intron CG6431 + chr2L_4_10725001 chr2L_10725001 RAL-358 131 chr2L 10862875 10862876 chr2L 10864487 10864490 Rt1c 6 1613 1.0 2.5 1.8 2.1 1615 chr2L 10862875 3` UTR CR43807 - chr2L 10863682 intron CR43807 - chr2L 10864490 3` UTR CR43807 - chr2L_6_10860001 chr2L_10860001 RAL-358 132 chr2L 11028442 11028458 chr2L 11028546 11028562 5 104 3.0 0.0 1.5 2.0 120 chr2L 11028442 intron Samuel - chr2L 11028502 intron Samuel - chr2L 11028562 intron Samuel - chr2L_5_11025001 chr2L_11025001 RAL-358 133 chr2L 11248573 11248580 chr2L 11248655 11248663 7 83 2.5 2.5 2.5 2.0 90 chr2L 11248573 intron ab + chr2L 11248618 intron ab + chr2L 11248663 intron ab + chr2L_7_11245001 chr2L_11245001 RAL-358 134 chr2L 11253339 11253366 chr2L 11253420 11253447 6 81 1.5 0.5 1.0 3.0 108 chr2L 11253339 intron ab + chr2L 11253393 intron ab + chr2L 11253447 intron ab + chr2L_6_11250001 chr2L_11250001 RAL-358 135 chr2L 11309010 11309021 chr2L 11309118 11309129 4 108 4.5 0.0 2.2 1.2 119 chr2L 11309010 intergenic not near genes chr2L 11309070 intergenic not near genes chr2L 11309129 intergenic not near genes chr2L_4_11305001 chr2L_11305001 RAL-358 136 chr2L 11414972 11414981 chr2L 11415055 11415064 4 83 2.0 4.0 3.0 1.0 92 chr2L 11414972 intergenic not near genes chr2L 11415018 intergenic not near genes chr2L 11415064 intergenic not near genes chr2L_4_11415001 chr2L_11415001 RAL-358 137 chr2L 11418663 11418682 chr2L 11418741 11418761 6 79 1.0 0.5 0.8 3.3 98 chr2L 11418663 intergenic not near genes chr2L 11418712 intergenic not near genes chr2L 11418761 intergenic not near genes chr2L_6_11415001 chr2L_11415001 RAL-358 138 chr2L 11520162 11520180 chr2L 11520301 11520319 6 138 5.0 2.0 3.5 1.3 157 chr2L 11520162 exon CG14929 + chr2L 11520240 exon CG14929 + chr2L 11520319 exon CG14929 + chr2L_6_11520001 chr2L_11520001 RAL-358 139 chr2L 11540589 11540609 chr2L 11547991 11548011 Tabor 6 7402 1.0 1.0 1.0 3.0 7422 chr2L 11540589 intergenic not near genes chr2L 11544300 intergenic not near genes chr2L 11548011 intergenic not near genes chr2L_6_11540001 chr2L_11540001 RAL-358 140 chr2L 11585233 11585239 chr2L 11585309 11585315 5 75 0.0 1.5 0.8 2.8 82 chr2L 11585233 intron kek2 + chr2L 11585274 intron kek2 + chr2L 11585315 intron kek2 + chr2L_5_11585001 chr2L_11585001 RAL-358 141 chr2L 11698580 11698591 chr2L 11698673 11698684 5 93 1.5 4.5 3.0 1.2 104 chr2L 11698580 intergenic not near genes chr2L 11698632 intergenic not near genes chr2L 11698684 intergenic not near genes chr2L_5_11695001 chr2L_11695001 RAL-358 142 chr2L 11710517 11710529 chr2L 11710597 11710612 4 82 1.0 0.5 0.8 2.2 95 chr2L 11710517 intergenic not near genes chr2L 11710564 intergenic not near genes chr2L 11710612 intergenic not near genes chr2L_4_11710001 chr2L_11710001 RAL-358 143 chr2L 11713505 11713540 chr2L 11720973 11721008 blood 10 7468 0.0 1.5 0.8 5.6 7503 chr2L 11713505 intergenic not near genes chr2L 11717256 intergenic not near genes chr2L 11721008 intergenic CR44143 + chr2L_10_11715001 chr2L_11715001 RAL-358 144 chr2L 11752868 11752891 chr2L 11753158 11753181 5 290 2.0 2.5 2.2 1.6 313 chr2L 11752868 intergenic CG42470 - chr2L 11753024 3` UTR CG42470 - chr2L 11753181 3` UTR CG42470 - chr2L_5_11750001 chr2L_11750001 RAL-358 145 chr2L 12067329 12067347 chr2L 12074381 12074399 297 4 7052 1.5 1.0 1.2 1.8 7070 chr2L 12067329 intergenic not near genes chr2L 12070864 intergenic not near genes chr2L 12074399 intergenic not near genes chr2L_4_12070001 chr2L_12070001 RAL-358 146 chr2L 12132728 12132749 chr2L 12132812 12132835 5 85 0.5 1.0 0.8 2.8 107 chr2L 12132728 intron rho-6 - chr2L 12132782 intron rho-6 - chr2L 12132835 intron rho-6 - chr2L_5_12130001 chr2L_12130001 RAL-358 147 chr2L 12151896 12151913 chr2L 12151991 12152008 5 95 5.5 0.5 3.0 1.2 112 chr2L 12151896 intron CG31760 + chr2L 12151952 intron CG31760 + chr2L 12152008 intron CG31760 + chr2L_5_12150001 chr2L_12150001 RAL-358 148 chr2L 12203293 12203327 chr2L 12203374 12203408 9 81 0.5 1.5 1.0 4.5 115 chr2L 12203293 intron aret + chr2L 12203350 intron aret + chr2L 12203408 intron aret + chr2L_9_12200001 chr2L_12200001 RAL-358 149 chr2L 12229576 12229609 chr2L 12229653 12229686 9 77 0.0 2.5 1.2 4.1 110 chr2L 12229576 intron aret + chr2L 12229631 intron aret + chr2L 12229686 intron aret + chr2L_9_12225001 chr2L_12225001 RAL-358 150 chr2L 12237005 12237033 chr2L 12237090 12237117 6 84 2.5 0.5 1.5 2.4 112 chr2L 12237005 intron aret + chr2L 12237061 intron aret + chr2L 12237117 intron aret + chr2L_6_12235001 chr2L_12235001 RAL-358 151 chr2L 12240002 12240021 chr2L 12240083 12240102 4 81 2.0 0.5 1.2 1.8 100 chr2L 12240002 intron aret + chr2L 12240052 intron aret + chr2L 12240102 intron aret + chr2L_4_12240001 chr2L_12240001 RAL-358 152 chr2L 12296255 12296264 chr2L 12296355 12296364 6 100 0.0 4.0 2.0 2.0 109 chr2L 12296255 intron aret + chr2L 12296310 intron aret + chr2L 12296364 intron aret + chr2L_6_12295001 chr2L_12295001 RAL-358 153 chr2L 12337281 12337315 chr2L 12337369 12337403 4 88 0.0 0.5 0.2 3.3 122 chr2L 12337281 intergenic not near genes chr2L 12337342 intergenic not near genes chr2L 12337403 intergenic not near genes chr2L_4_12335001 chr2L_12335001 RAL-358 154 chr2L 12454739 12454773 chr2L 12454836 12454870 5 97 1.5 0.0 0.8 2.8 131 chr2L 12454739 intergenic not near genes chr2L 12454804 intergenic not near genes chr2L 12454870 intergenic not near genes chr2L_5_12450001 chr2L_12450001 RAL-358 155 chr2L 12487891 12487916 chr2L 12487972 12487997 8 81 5.0 2.0 3.5 1.8 106 chr2L 12487891 intron bun - chr2L 12487944 intron bun - chr2L 12487997 intron bun - chr2L_8_12485001 chr2L_12485001 RAL-358 156 chr2L 12558320 12558348 chr2L 12565449 12565477 HMS-Beagle 6 7128 1.0 0.5 0.8 3.3 7157 chr2L 12558320 intergenic not near genes chr2L 12561898 intergenic not near genes chr2L 12565477 intergenic not near genes chr2L_6_12560001 chr2L_12560001 RAL-358 157 chr2L 12693847 12693860 chr2L 12693924 12693934 5 76 7.5 0.0 3.8 1.0 87 chr2L 12693847 3` UTR CG6153 + chr2L 12693890 3` UTR,3` UTR CG6153 +,CG5780 - chr2L 12693934 3` UTR,3` UTR CG6153 +,CG5780 - chr2L_5_12690001 chr2L_12690001 RAL-358 158 chr2L 12728920 12728936 chr2L 12729161 12729178 pogo 8 242 1.5 2.0 1.8 2.9 258 chr2L 12728920 intron MRP + chr2L 12729049 intron MRP + chr2L 12729178 intron MRP + chr2L_8_12725001 chr2L_12725001 RAL-358 159 chr2L 12731063 12731087 chr2L 12735830 12735854 F-element 4 4766 2.5 3.0 2.8 1.1 4791 chr2L 12731063 intron MRP + chr2L 12733458 intron MRP + chr2L 12735854 intron MRP + chr2L_4_12730001 chr2L_12730001 RAL-358 160 chr2L 12781804 12781810 chr2L 12789247 12789253 Quasimodo 5 7443 1.0 1.5 1.2 2.3 7449 chr2L 12781804 intergenic not near genes chr2L 12785528 intergenic not near genes chr2L 12789253 intergenic not near genes chr2L_5_12785001 chr2L_12785001 RAL-358 161 chr2L 12791616 12791631 chr2L 12795290 12795306 F-element 5 3674 5.0 3.5 4.2 1.0 3690 chr2L 12791616 intergenic not near genes chr2L 12793461 intergenic not near genes chr2L 12795306 intergenic not near genes chr2L_5_12790001 chr2L_12790001 RAL-358 162 chr2L 12799153 12799181 chr2L 12858144 12858173 6 58991 5.0 12.5 8.8 0.6 59020 chr2L 12799153 intergenic not near genes chr2L 12828663 intergenic not near genes chr2L 12858173 intergenic not near genes chr2L_6_12825001 chr2L_12825001 RAL-358 163 chr2L 12868239 12868262 chr2L 12868324 12868348 5 86 4.0 1.5 2.8 1.3 109 chr2L 12868239 intergenic not near genes chr2L 12868294 intergenic not near genes chr2L 12868348 intergenic not near genes chr2L_5_12865001 chr2L_12865001 RAL-358 164 chr2L 12894031 12894048 chr2L 12895496 12895512 hobo 6 1465 0.5 5.5 3.0 1.5 1481 chr2L 12894031 intergenic not near genes chr2L 12894772 intergenic not near genes chr2L 12895512 intergenic not near genes chr2L_6_12890001 chr2L_12890001 RAL-358 165 chr2L 13036243 13036263 chr2L 13036485 13036504 X-element 4 242 1.0 1.0 1.0 2.0 261 chr2L 13036243 intron CG9932 - chr2L 13036374 intron CG9932 - chr2L 13036504 intron CG9932 - chr2L_4_13035001 chr2L_13035001 RAL-358 166 chr2L 13063387 13063408 chr2L 13063464 13063481 14 76 0.5 3.5 2.0 4.7 94 chr2L 13063387 intergenic not near genes chr2L 13063434 intergenic not near genes chr2L 13063481 intergenic not near genes chr2L_14_13060001 chr2L_13060001 RAL-358 167 chr2L 13147747 13147759 chr2L 13147823 13147835 4 76 4.0 0.0 2.0 1.3 88 chr2L 13147747 intergenic not near genes chr2L 13147791 intergenic not near genes chr2L 13147835 intergenic not near genes chr2L_4_13145001 chr2L_13145001 RAL-358 168 chr2L 13164885 13164909 chr2L 13164975 13165003 5 93 1.5 2.0 1.8 1.8 118 chr2L 13164885 exon DnaJ-H - chr2L 13164944 intron DnaJ-H - chr2L 13165003 intron DnaJ-H - chr2L_5_13160001 chr2L_13160001 RAL-358 169 chr2L 13216073 13216078 chr2L 13216148 13216154 4 76 0.5 0.0 0.2 3.3 81 chr2L 13216073 intergenic snRNA:U2:34ABb +,snRNA:U2:34ABc +,CG9426 - chr2L 13216114 intergenic snRNA:U2:34ABb +,snRNA:U2:34ABc +,CG9426 - chr2L 13216154 intergenic snRNA:U2:34ABb +,snRNA:U2:34ABc +,CG9426 - chr2L_4_13215001 chr2L_13215001 RAL-358 170 chr2L 13231887 13231915 chr2L 13231998 13232026 9 111 1.0 1.0 1.0 4.5 139 chr2L 13231887 intergenic Prosalpha6T + chr2L 13231956 intergenic Prosalpha6T + chr2L 13232026 intergenic Prosalpha6T + chr2L_9_13230001 chr2L_13230001 RAL-358 171 chr2L 13446609 13446619 chr2L 13446702 13446712 4 93 3.0 5.0 4.0 0.8 103 chr2L 13446609 5` UTR CG42784 + chr2L 13446660 5` UTR CG42784 + chr2L 13446712 intron CG42784 + chr2L_4_13445001 chr2L_13445001 RAL-358 172 chr2L 13481452 13481463 chr2L 13482059 13482070 jockey 5 606 2.0 5.5 3.8 1.0 618 chr2L 13481452 intron CG42784 + chr2L 13481761 intron CG42784 + chr2L 13482070 intron CG42784 + chr2L_5_13480001 chr2L_13480001 RAL-358 173 chr2L 13676707 13676980 chr2L 13676786 13677071 7 87 0.5 4.5 2.5 2.0 364 chr2L 13676707 intergenic CG31814 - chr2L 13676889 3` UTR CG31814 - chr2L 13677071 3` UTR CG31814 - chr2L_7_13675001 chr2L_13675001 RAL-358 174 chr2L 13693490 13693518 chr2L 13693596 13693623 12 106 2.5 2.0 2.2 3.8 133 chr2L 13693490 intron CG31814 - chr2L 13693556 intron CG31814 - chr2L 13693623 intron CG31814 - chr2L_12_13690001 chr2L_13690001 RAL-358 175 chr2L 13743961 13743975 chr2L 13744093 13744105 5 131 3.5 0.0 1.8 1.8 144 chr2L 13743961 intergenic not near genes chr2L 13744033 intergenic not near genes chr2L 13744105 intergenic not near genes chr2L_5_13740001 chr2L_13740001 RAL-358 176 chr2L 13761298 13761315 chr2L 13761381 13761398 8 83 1.0 4.0 2.5 2.3 100 chr2L 13761298 intron TM9SF4 + chr2L 13761348 intron TM9SF4 + chr2L 13761398 intron TM9SF4 + chr2L_8_13760001 chr2L_13760001 RAL-358 177 chr2L 13761818 13761837 chr2L 13762929 13762945 Doc 6 1110 1.0 3.0 2.0 2.0 1127 chr2L 13761818 intron TM9SF4 + chr2L 13762382 intron TM9SF4 + chr2L 13762945 intron TM9SF4 + chr2L_6_13760001 chr2L_13760001 RAL-358 178 chr2L 13800185 13800206 chr2L 13800289 13800310 4 104 0.0 1.5 0.8 2.2 125 chr2L 13800185 intergenic not near genes chr2L 13800248 intergenic not near genes chr2L 13800310 intergenic not near genes chr2L_4_13800001 chr2L_13800001 RAL-358 179 chr2L 13988291 13988301 chr2L 13988378 13988388 4 87 2.0 0.5 1.2 1.8 97 chr2L 13988291 intron rk - chr2L 13988340 intron rk - chr2L 13988388 intron rk - chr2L_4_13985001 chr2L_13985001 RAL-358 180 chr2L 14436612 14436634 chr2L 14436729 14436751 11 117 7.0 2.0 4.5 2.0 139 chr2L 14436612 intergenic not near genes chr2L 14436682 intergenic not near genes chr2L 14436751 intergenic not near genes chr2L_11_14435001 chr2L_14435001 RAL-358 181 chr2L 14524618 14524648 chr2L 14525116 14525146 5 498 1.0 0.0 0.5 3.3 528 chr2L 14524618 intron CG33648 + chr2L 14524882 intron CG33648 + chr2L 14525146 exon CG33648 + chr2L_5_14520001 chr2L_14520001 RAL-358 182 chr2L 14601985 14602002 chr2L 14602068 14602086 4 84 1.5 1.5 1.5 1.6 101 chr2L 14601985 exon osp - chr2L 14602036 intron osp - chr2L 14602086 intron osp - chr2L_4_14600001 chr2L_14600001 RAL-358 183 chr2L 14715551 14715555 chr2L 14715642 14715646 5 91 2.5 3.5 3.0 1.2 95 chr2L 14715551 intergenic not near genes chr2L 14715598 intergenic not near genes chr2L 14715646 intergenic not near genes chr2L_5_14715001 chr2L_14715001 RAL-358 184 chr2L 14774232 14774253 chr2L 14774449 14774470 7 217 0.0 4.0 2.0 2.3 238 chr2L 14774232 3` UTR CG4650 - chr2L 14774351 3` UTR CG4650 - chr2L 14774470 3` UTR CG4650 - chr2L_7_14770001 chr2L_14770001 RAL-358 185 chr2L 14803877 14803907 chr2L 14809080 14809110 copia 5 5203 1.0 0.0 0.5 3.3 5233 chr2L 14803877 intergenic not near genes chr2L 14806494 intergenic not near genes chr2L 14809110 intergenic not near genes chr2L_5_14805001 chr2L_14805001 RAL-358 186 chr2L 14840981 14841010 chr2L 14841068 14841097 6 87 1.0 1.0 1.0 3.0 116 chr2L 14840981 3` UTR CR43805 - chr2L 14841039 3` UTR CR43805 - chr2L 14841097 3` UTR CR43805 - chr2L_6_14840001 chr2L_14840001 RAL-358 187 chr2L 14854963 14854991 chr2L 14855041 14855069 7 78 4.0 0.5 2.2 2.2 106 chr2L 14854963 intergenic not near genes chr2L 14855016 intergenic not near genes chr2L 14855069 intergenic not near genes chr2L_7_14855001 chr2L_14855001 RAL-358 188 chr2L 14889962 14889984 chr2L 14890386 14890409 jockey 8 424 3.0 1.5 2.2 2.5 447 chr2L 14889962 intergenic not near genes chr2L 14890186 intergenic not near genes chr2L 14890409 intergenic not near genes chr2L_8_14890001 chr2L_14890001 RAL-358 189 chr2L 14939651 14939679 chr2L 14939778 14939806 8 127 1.5 1.5 1.5 3.2 155 chr2L 14939651 intron CG42313 - chr2L 14939728 intron CG42313 - chr2L 14939806 intron CG42313 - chr2L_8_14935001 chr2L_14935001 RAL-358 190 chr2L 15066576 15066592 chr2L 15066669 15066685 4 93 0.5 1.5 1.0 2.0 109 chr2L 15066576 intron,intron vas +,vig - chr2L 15066630 intron,intron vas +,vig - chr2L 15066685 intron,intron vas +,vig - chr2L_4_15065001 chr2L_15065001 RAL-358 191 chr2L 15082663 15082674 chr2L 15082754 15082768 7 93 2.5 1.0 1.8 2.5 105 chr2L 15082663 intron CG15270 + chr2L 15082716 intron CG15270 + chr2L 15082768 intron CG15270 + chr2L_7_15080001 chr2L_15080001 RAL-358 192 chr2L 15122776 15122803 chr2L 15122856 15122883 7 80 0.0 0.0 0.0 7.0 107 chr2L 15122776 intergenic not near genes chr2L 15122830 intergenic not near genes chr2L 15122883 intergenic not near genes chr2L_7_15120001 chr2L_15120001 RAL-358 193 chr2L 15226375 15226396 chr2L 15226451 15226472 6 76 2.0 1.5 1.8 2.1 97 chr2L 15226375 intergenic not near genes chr2L 15226424 intergenic not near genes chr2L 15226472 intergenic not near genes chr2L_6_15225001 chr2L_15225001 RAL-358 194 chr2L 15324589 15324622 chr2L 15324667 15324699 6 78 1.0 1.5 1.2 2.7 110 chr2L 15324589 intergenic not near genes chr2L 15324644 intergenic not near genes chr2L 15324699 intergenic not near genes chr2L_6_15320001 chr2L_15320001 RAL-358 195 chr2L 15445655 15445673 chr2L 15445736 15445754 7 81 0.5 3.5 2.0 2.3 99 chr2L 15445655 intergenic not near genes chr2L 15445704 intergenic not near genes chr2L 15445754 intergenic not near genes chr2L_7_15445001 chr2L_15445001 RAL-358 196 chr2L 15446050 15446066 chr2L 15453519 15453535 blood 6 7469 6.0 1.0 3.5 1.3 7485 chr2L 15446050 intergenic not near genes chr2L 15449792 intergenic not near genes chr2L 15453535 intergenic not near genes chr2L_6_15445001 chr2L_15445001 RAL-358 197 chr2L 15483290 15483314 chr2L 15483375 15483400 5 86 0.5 2.0 1.2 2.3 110 chr2L 15483290 intergenic not near genes chr2L 15483345 intergenic not near genes chr2L 15483400 intergenic not near genes chr2L_5_15480001 chr2L_15480001 RAL-358 198 chr2L 15610682 15610702 chr2L 15613574 15613595 4 2892 9.0 4.5 6.8 0.5 2913 chr2L 15610682 3` UTR,5` UTR CG15255 -,CR44865 + chr2L 15612138 intergenic CG11864 -,CG15255 - chr2L 15613595 intergenic CG11864 -,CG15254 - chr2L_4_15610001 chr2L_15610001 RAL-358 199 chr2L 15732508 15732542 chr2L 15732603 15732637 8 95 0.5 1.0 0.8 4.4 129 chr2L 15732508 intron CycE - chr2L 15732572 intron CycE - chr2L 15732637 intron CycE - chr2L_8_15730001 chr2L_15730001 RAL-358 200 chr2L 15906181 15906209 chr2L 15906270 15906298 9 89 1.0 1.5 1.2 4.1 117 chr2L 15906181 intron beat-Ib - chr2L 15906240 intron beat-Ib - chr2L 15906298 intron beat-Ib - chr2L_9_15905001 chr2L_15905001 RAL-358 201 chr2L 15907358 15907368 chr2L 15907711 15907723 9 355 3.5 1.5 2.5 2.6 365 chr2L 15907358 intron beat-Ib - chr2L 15907540 intron beat-Ib - chr2L 15907723 intron beat-Ib - chr2L_9_15905001 chr2L_15905001 RAL-358 202 chr2L 15930906 15930939 chr2L 15930998 15931031 11 92 0.5 1.0 0.8 6.1 125 chr2L 15930906 intron beat-Ib - chr2L 15930968 intron beat-Ib - chr2L 15931031 intron beat-Ib - chr2L_11_15930001 chr2L_15930001 RAL-358 203 chr2L 15956030 15956049 chr2L 15957497 15957516 hobo 7 1467 5.5 3.0 4.2 1.3 1486 chr2L 15956030 intron beat-Ib - chr2L 15956773 intron beat-Ib - chr2L 15957516 intron beat-Ib - chr2L_7_15955001 chr2L_15955001 RAL-358 204 chr2L 16071771 16071772 chr2L 16217659 16217660 copia 13 145889 11.5 11.5 11.5 1.0 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_13_16140001 chr2L_16140001 RAL-358 205 chr2L 16106557 16106584 chr2L 16106675 16106702 11 118 1.0 1.5 1.2 5.0 145 chr2L 16106557 intergenic not near genes chr2L 16106630 intergenic not near genes chr2L 16106702 intergenic not near genes chr2L_11_16105001 chr2L_16105001 RAL-358 206 chr2L 16141160 16141178 chr2L 16146367 16146385 copia 4 5207 0.5 0.0 0.2 3.3 5225 chr2L 16141160 intergenic not near genes chr2L 16143772 intergenic not near genes chr2L 16146385 intergenic not near genes chr2L_4_16140001 chr2L_16140001 RAL-358 207 chr2L 16203357 16203379 chr2L 16203450 16203471 4 92 2.0 1.0 1.5 1.6 114 chr2L 16203357 5` UTR CR44736 + chr2L 16203414 5` UTR CR44736 + chr2L 16203471 5` UTR CR44736 + chr2L_4_16200001 chr2L_16200001 RAL-358 208 chr2L 9084339 9084340 chr2L 16217660 16217660 12 7133321 7.5 11.5 9.5 1.1 7133321 chr2L 9084339 intron Toll-4 + chr2L 12651000 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_12_12650001 chr2L_12650001 RAL-358 209 chr2L 16217660 16217660 chr2L 18622718 18622719 6 2405058 11.5 12.5 12.0 0.5 2405059 chr2L 16217660 intergenic not near genes chr2L 17420190 intron Dif - chr2L 18622719 intron MESR3 + chr2L_6_17420001 chr2L_17420001 RAL-358 210 chr2L 16254903 16254915 chr2L 16255162 16255174 9 259 0.5 2.0 1.2 4.1 271 chr2L 16254903 intron PRL-1 - chr2L 16255038 intron PRL-1 - chr2L 16255174 intron PRL-1 - chr2L_9_16255001 chr2L_16255001 RAL-358 211 chr2L 16537328 16537356 chr2L 16537404 16537432 5 76 0.0 3.0 1.5 2.0 104 chr2L 16537328 intergenic not near genes chr2L 16537380 intergenic not near genes chr2L 16537432 intergenic not near genes chr2L_5_16535001 chr2L_16535001 RAL-358 212 chr2L 16693917 16693943 chr2L 16693998 16694024 7 81 0.5 1.5 1.0 3.5 107 chr2L 16693917 intron grp + chr2L 16693970 intron grp + chr2L 16694024 intron grp + chr2L_7_16690001 chr2L_16690001 RAL-358 213 chr2L 16709100 16709102 chr2L 16709184 16709186 7 84 2.5 5.5 4.0 1.4 86 chr2L 16709100 intron CG31808 - chr2L 16709143 intron CG31808 - chr2L 16709186 intron CG31808 - chr2L_7_16705001 chr2L_16705001 RAL-358 214 chr2L 16764978 16764988 chr2L 16765058 16765067 4 80 0.5 0.5 0.5 2.7 89 chr2L 16764978 intergenic not near genes chr2L 16765022 intergenic not near genes chr2L 16765067 intergenic not near genes chr2L_4_16765001 chr2L_16765001 RAL-358 215 chr2L 16796408 16796436 chr2L 16796513 16796541 7 105 2.5 1.0 1.8 2.5 133 chr2L 16796408 intergenic Ugt36Bb +,Ugt36Ba + chr2L 16796474 intergenic Ugt36Bb +,Ugt36Ba + chr2L 16796541 intergenic Ugt36Bb + chr2L_7_16795001 chr2L_16795001 RAL-358 216 chr2L 17058010 17058027 chr2L 17058091 17058105 7 80 0.0 3.5 1.8 2.5 95 chr2L 17058010 intergenic not near genes chr2L 17058058 intergenic not near genes chr2L 17058105 intergenic not near genes chr2L_7_17055001 chr2L_17055001 RAL-358 217 chr2L 17264743 17264772 chr2L 17264823 17264852 6 80 1.0 0.0 0.5 4.0 109 chr2L 17264743 intergenic not near genes chr2L 17264798 intergenic not near genes chr2L 17264852 intergenic not near genes chr2L_6_17260001 chr2L_17260001 RAL-358 218 chr2L 17327917 17327928 chr2L 17327996 17328012 7 84 4.0 2.5 3.2 1.7 95 chr2L 17327917 intergenic not near genes chr2L 17327964 intergenic not near genes chr2L 17328012 intergenic not near genes chr2L_7_17325001 chr2L_17325001 RAL-358 219 chr2L 17329078 17329105 chr2L 17329205 17329233 6 128 2.5 0.0 1.2 2.7 155 chr2L 17329078 intergenic not near genes chr2L 17329156 intergenic not near genes chr2L 17329233 intergenic not near genes chr2L_6_17325001 chr2L_17325001 RAL-358 220 chr2L 17727541 17727570 chr2L 17727627 17727656 5 86 0.0 1.0 0.5 3.3 115 chr2L 17727541 intron CadN - chr2L 17727598 intron CadN - chr2L 17727656 intron CadN - chr2L_5_17725001 chr2L_17725001 RAL-358 221 chr2L 17727871 17727877 chr2L 17729338 17729344 hobo 4 1467 3.0 5.0 4.0 0.8 1473 chr2L 17727871 intron CadN - chr2L 17728608 intron CadN - chr2L 17729344 intron CadN - chr2L_4_17725001 chr2L_17725001 RAL-358 222 chr2L 17944424 17944452 chr2L 17944584 17944615 5 162 2.0 2.0 2.0 1.7 191 chr2L 17944424 intergenic not near genes chr2L 17944520 intergenic not near genes chr2L 17944615 intergenic not near genes chr2L_5_17940001 chr2L_17940001 RAL-358 223 chr2L 17951943 17951979 chr2L 17953410 17953446 hobo 20 1467 2.0 1.0 1.5 8.0 1503 chr2L 17951943 intergenic CR44398 -,CR44397 - chr2L 17952694 intergenic not near genes chr2L 17953446 intergenic not near genes chr2L_20_17950001 chr2L_17950001 RAL-358 224 chr2L 18051877 18051897 chr2L 18061024 18061044 roo 6 9147 3.5 1.5 2.5 1.7 9167 chr2L 18051877 intron rdo + chr2L 18056460 intron rdo + chr2L 18061044 intron rdo + chr2L_6_18055001 chr2L_18055001 RAL-358 225 chr2L 18079816 18079832 chr2L 18079902 18079918 4 86 2.0 2.5 2.2 1.2 102 chr2L 18079816 intron Arr1 + chr2L 18079867 intron Arr1 + chr2L 18079918 intron Arr1 + chr2L_4_18075001 chr2L_18075001 RAL-358 226 chr2L 18307911 18307915 chr2L 18307988 18307992 5 77 0.0 1.5 0.8 2.8 81 chr2L 18307911 intergenic CR43353 - chr2L 18307952 intergenic CR43353 - chr2L 18307992 intergenic CR43353 - chr2L_5_18305001 chr2L_18305001 RAL-358 227 chr2L 18353199 18353213 chr2L 18353276 18353288 6 76 2.5 2.0 2.2 1.9 89 chr2L 18353199 intron Fas3 + chr2L 18353244 intron Fas3 + chr2L 18353288 intron Fas3 + chr2L_6_18350001 chr2L_18350001 RAL-358 228 chr2L 18394769 18394786 chr2L 18394958 18394974 6 189 4.0 1.0 2.5 1.7 205 chr2L 18394769 intergenic not near genes chr2L 18394872 intergenic not near genes chr2L 18394974 intergenic not near genes chr2L_6_18390001 chr2L_18390001 RAL-358 229 chr2L 18408033 18408042 chr2L 18412817 18412826 Doc 5 4784 2.5 6.5 4.5 0.9 4793 chr2L 18408033 intergenic not near genes chr2L 18410430 intergenic not near genes chr2L 18412826 intergenic not near genes chr2L_5_18410001 chr2L_18410001 RAL-358 230 chr2L 16217660 16217660 chr2L 18622718 18622719 6 2405058 11.5 12.5 12.0 0.5 2405059 chr2L 16217660 intergenic not near genes chr2L 17420190 intron Dif - chr2L 18622719 intron MESR3 + chr2L_6_17420001 chr2L_17420001 RAL-358 231 chr2L 18662002 18662019 chr2L 18662085 18662106 6 86 1.5 2.5 2.0 2.0 104 chr2L 18662002 intergenic MESR3 + chr2L 18662054 intergenic MESR3 + chr2L 18662106 intergenic MESR3 + chr2L_6_18660001 chr2L_18660001 RAL-358 232 chr2L 18812569 18812592 chr2L 18812830 18812854 8 262 2.0 2.0 2.0 2.7 285 chr2L 18812569 intergenic CG17325 +,CG42305 + chr2L 18812712 5` UTR,5` UTR CG17325 +,CG42305 + chr2L 18812854 5` UTR,5` UTR CG17325 +,CG42305 + chr2L_8_18810001 chr2L_18810001 RAL-358 233 chr2L 18826646 18826661 chr2L 18826781 18826796 4 135 5.0 5.0 5.0 0.7 150 chr2L 18826646 3` UTR CG17323 + chr2L 18826721 intergenic CG17323 +,CG17322 + chr2L 18826796 5` UTR CG17322 + chr2L_4_18825001 chr2L_18825001 RAL-358 234 chr2L 18902625 18902654 chr2L 18902906 18902935 7 281 1.0 0.5 0.8 3.9 310 chr2L 18902625 intergenic not near genes chr2L 18902780 intergenic not near genes chr2L 18902935 intergenic not near genes chr2L_7_18900001 chr2L_18900001 RAL-358 235 chr2L 18926580 18926592 chr2L 18926687 18926699 6 107 0.5 3.0 1.8 2.1 119 chr2L 18926580 intron ssp3 - chr2L 18926640 intron ssp3 - chr2L 18926699 intron ssp3 - chr2L_6_18925001 chr2L_18925001 RAL-358 236 chr2L 19159039 19159056 chr2L 19159160 19159177 6 122 1.5 1.0 1.2 2.7 138 chr2L 19159039 intron,3` UTR brat +,CR44977 - chr2L 19159108 intron,3` UTR brat +,CR44977 - chr2L 19159177 intron,3` UTR brat +,CR44977 - chr2L_6_19155001 chr2L_19155001 RAL-358 237 chr2L 19236911 19236936 chr2L 19240651 19240676 6 3740 16.5 8.5 12.5 0.4 3765 chr2L 19236911 intergenic not near genes chr2L 19238794 intergenic not near genes chr2L 19240676 intergenic not near genes chr2L_6_19235001 chr2L_19235001 RAL-358 238 chr2L 19309621 19309648 chr2L 19309701 19309728 4 80 2.0 5.0 3.5 0.9 107 chr2L 19309621 intergenic not near genes chr2L 19309674 intergenic not near genes chr2L 19309728 intergenic not near genes chr2L_4_19305001 chr2L_19305001 RAL-358 239 chr2L 19316210 19316218 chr2L 19316287 19316295 4 77 0.5 0.5 0.5 2.7 85 chr2L 19316210 intergenic not near genes chr2L 19316252 intergenic not near genes chr2L 19316295 intergenic not near genes chr2L_4_19315001 chr2L_19315001 RAL-358 240 chr2L 19345018 19345045 chr2L 19357227 19357254 blood 12 12209 1.0 0.5 0.8 6.7 12236 chr2L 19345018 intron dnt - chr2L 19351136 intron dnt - chr2L 19357254 intron dnt - chr2L_12_19350001 chr2L_19350001 RAL-358 241 chr2L 19360589 19360615 chr2L 19360726 19360750 7 136 1.5 1.5 1.5 2.8 161 chr2L 19360589 intron dnt - chr2L 19360670 intron dnt - chr2L 19360750 intron dnt - chr2L_7_19360001 chr2L_19360001 RAL-358 242 chr2L 19380506 19380528 chr2L 19380586 19380608 5 80 1.0 3.5 2.2 1.6 102 chr2L 19380506 intergenic CG17350 + chr2L 19380557 intergenic CG17350 + chr2L 19380608 intergenic CG17350 + chr2L_5_19380001 chr2L_19380001 RAL-358 243 chr2L 19405617 19405628 chr2L 19405707 19405718 6 90 3.5 2.0 2.8 1.6 101 chr2L 19405617 intron Pax - chr2L 19405668 intron Pax - chr2L 19405718 intron Pax - chr2L_6_19405001 chr2L_19405001 RAL-358 244 chr2L 19543143 19543152 chr2L 19543227 19543236 4 84 3.5 0.5 2.0 1.3 93 chr2L 19543143 intron ref(2)P + chr2L 19543190 intron ref(2)P + chr2L 19543236 intron ref(2)P + chr2L_4_19540001 chr2L_19540001 RAL-358 245 chr2L 19560027 19560036 chr2L 19560279 19560288 6 252 2.5 2.0 2.2 1.9 261 chr2L 19560027 exon Tep5 + chr2L 19560158 exon Tep5 + chr2L 19560288 intron Tep5 + chr2L_6_19560001 chr2L_19560001 RAL-358 246 chr2L 19601579 19601597 chr2L 19601656 19601674 5 77 0.0 2.0 1.0 2.5 95 chr2L 19601579 intron,intron Lar +,CR44978 - chr2L 19601626 intron,intron Lar +,CR44978 - chr2L 19601674 intron,intron Lar +,CR44978 - chr2L_5_19600001 chr2L_19600001 RAL-358 247 chr2L 19620100 19620130 chr2L 19621089 19621119 jockey 9 988 2.0 0.5 1.2 4.1 1019 chr2L 19620100 intron Lar + chr2L 19620610 intron Lar + chr2L 19621119 intron Lar + chr2L_9_19620001 chr2L_19620001 RAL-358 248 chr2L 19697147 19697162 chr2L 19697239 19697255 8 93 0.0 3.0 1.5 3.2 108 chr2L 19697147 intron Lar + chr2L 19697201 intron Lar + chr2L 19697255 intron Lar + chr2L_8_19695001 chr2L_19695001 RAL-358 249 chr2L 19712697 19712715 chr2L 19712779 19712799 5 83 0.0 0.0 0.0 5.0 102 chr2L 19712697 intron Lar + chr2L 19712748 intron Lar + chr2L 19712799 intron Lar + chr2L_5_19710001 chr2L_19710001 RAL-358 250 chr2L 19737355 19737378 chr2L 19740824 19740847 1360 4 3469 1.0 2.5 1.8 1.4 3492 chr2L 19737355 intergenic Nf-YB + chr2L 19739101 intergenic not near genes chr2L 19740847 intergenic not near genes chr2L_4_19735001 chr2L_19735001 RAL-358 251 chr2L 19823264 19823296 chr2L 19823345 19823385 5 84 1.0 0.0 0.5 3.3 121 chr2L 19823264 intron sick + chr2L 19823324 intron sick + chr2L 19823385 intron sick + chr2L_5_19820001 chr2L_19820001 RAL-358 252 chr2L 19837278 19837309 chr2L 19837358 19837389 6 80 2.0 0.5 1.2 2.7 111 chr2L 19837278 intron sick + chr2L 19837334 intron sick + chr2L 19837389 intron sick + chr2L_6_19835001 chr2L_19835001 RAL-358 253 chr2L 20005878 20005900 chr2L 20010954 20010976 flea 6 5076 1.5 3.5 2.5 1.7 5098 chr2L 20005878 intron CG43861 - chr2L 20008427 intron CG43861 - chr2L 20010976 intron CG43861 - chr2L_6_20005001 chr2L_20005001 RAL-358 254 chr2L 20079882 20079903 chr2L 20080005 20080026 8 122 1.5 1.5 1.5 3.2 144 chr2L 20079882 intron,intron neb +,fok - chr2L 20079954 intron,intron neb +,fok - chr2L 20080026 intron,intron neb +,fok - chr2L_8_20075001 chr2L_20075001 RAL-358 255 chr2L 20272121 20272145 chr2L 20282831 20282856 copia 7 10711 2.0 3.0 2.5 2.0 10735 chr2L 20272121 intergenic not near genes chr2L 20277488 intergenic not near genes chr2L 20282856 intergenic not near genes chr2L_7_20275001 chr2L_20275001 RAL-358 256 chr2L 20298826 20298854 chr2L 20298907 20298937 5 83 1.0 0.0 0.5 3.3 111 chr2L 20298826 intergenic not near genes chr2L 20298882 intergenic not near genes chr2L 20298937 intergenic not near genes chr2L_5_20295001 chr2L_20295001 RAL-358 257 chr2L 20300000 20300014 chr2L 20300088 20300102 4 88 4.0 2.0 3.0 1.0 102 chr2L 20300000 intergenic not near genes chr2L 20300051 intergenic not near genes chr2L 20300102 intergenic not near genes chr2L_4_20300001 chr2L_20300001 RAL-358 258 chr2L 20383440 20383467 chr2L 20383531 20383559 9 92 2.0 3.5 2.8 2.4 119 chr2L 20383440 intergenic not near genes chr2L 20383500 intergenic not near genes chr2L 20383559 intergenic not near genes chr2L_9_20380001 chr2L_20380001 RAL-358 259 chr2L 20498696 20498697 chr2L 20498795 20498796 4 99 2.5 1.5 2.0 1.3 100 chr2L 20498696 intergenic not near genes chr2L 20498746 intergenic not near genes chr2L 20498796 intergenic not near genes chr2L_4_20495001 chr2L_20495001 RAL-358 260 chr2L 20553195 20553208 chr2L 20553271 20553284 6 76 4.0 1.0 2.5 1.7 89 chr2L 20553195 intergenic not near genes chr2L 20553240 intergenic not near genes chr2L 20553284 intergenic not near genes chr2L_6_20550001 chr2L_20550001 RAL-358 261 chr2L 20576223 20576251 chr2L 20583690 20583719 blood 5 7467 1.5 0.5 1.0 2.5 7496 chr2L 20576223 intergenic not near genes chr2L 20579971 intergenic not near genes chr2L 20583719 3` UTR CR44909 - chr2L_5_20575001 chr2L_20575001 RAL-358 262 chr2L 20601793 20601811 chr2L 20601871 20601889 4 78 1.0 2.0 1.5 1.6 96 chr2L 20601793 intron CR44909 - chr2L 20601841 intron CR44909 - chr2L 20601889 intron CR44909 - chr2L_4_20600001 chr2L_20600001 RAL-358 263 chr2L 20626107 20626133 chr2L 20626213 20626239 8 106 0.0 2.5 1.2 3.6 132 chr2L 20626107 3` UTR CR44909 - chr2L 20626173 3` UTR CR44909 - chr2L 20626239 intergenic CR44909 - chr2L_8_20625001 chr2L_20625001 RAL-358 264 chr2L 20687084 20687110 chr2L 20687163 20687189 4 79 0.5 1.5 1.0 2.0 105 chr2L 20687084 intron Hr38 - chr2L 20687136 intron Hr38 - chr2L 20687189 intron Hr38 - chr2L_4_20685001 chr2L_20685001 RAL-358 265 chr2L 20695801 20695815 chr2L 20695889 20695901 5 87 2.5 1.5 2.0 1.7 100 chr2L 20695801 intron Hr38 - chr2L 20695851 intron Hr38 - chr2L 20695901 intron Hr38 - chr2L_5_20695001 chr2L_20695001 RAL-358 266 chr2L 20804717 20804736 chr2L 20804802 20804818 4 84 1.5 2.0 1.8 1.4 101 chr2L 20804717 intron CG9328 + chr2L 20804768 intron CG9328 + chr2L 20804818 intron CG9328 + chr2L_4_20800001 chr2L_20800001 RAL-358 267 chr2L 20976649 20976659 chr2L 20981464 20981474 X-element 4 4815 4.0 2.5 3.2 1.0 4825 chr2L 20976649 intron CG42238 - chr2L 20979062 intron CG42238 - chr2L 20981474 intron CG42238 - chr2L_4_20975001 chr2L_20975001 RAL-358 268 chr2L 20984741 20984772 chr2L 20984833 20984864 7 92 3.0 0.5 1.8 2.5 123 chr2L 20984741 intron CG42238 - chr2L 20984802 intron CG42238 - chr2L 20984864 intron CG42238 - chr2L_7_20980001 chr2L_20980001 RAL-358 269 chr2L 21013915 21013932 chr2L 21014004 21014021 6 89 1.0 1.0 1.0 3.0 106 chr2L 21013915 intron CG42238 - chr2L 21013968 intron CG42238 - chr2L 21014021 intron CG42238 - chr2L_6_21010001 chr2L_21010001 RAL-358 270 chr2L 21020277 21020301 chr2L 21023954 21023978 NOF 4 3677 1.5 2.5 2.0 1.3 3701 chr2L 21020277 intron CG42238 - chr2L 21022128 intron CG42238 - chr2L 21023978 intron CG42238 - chr2L_4_21020001 chr2L_21020001 RAL-358 271 chr2L 21119299 21119318 chr2L 21119383 21119402 6 84 0.5 2.0 1.2 2.7 103 chr2L 21119299 intron Nhe2 + chr2L 21119350 intron Nhe2 + chr2L 21119402 intron Nhe2 + chr2L_6_21115001 chr2L_21115001 RAL-358 272 chr2L 21160763 21160786 chr2L 21160846 21160869 6 83 0.5 2.0 1.2 2.7 106 chr2L 21160763 3` UTR,3` UTR CG9248 +,Nbr - chr2L 21160816 3` UTR,3` UTR CG9248 +,Nbr - chr2L 21160869 3` UTR,3` UTR CG9248 +,Nbr - chr2L_6_21160001 chr2L_21160001 RAL-358 273 chr2L 21286618 21286625 chr2L 21286696 21286703 5 78 2.0 1.5 1.8 1.8 85 chr2L 21286618 exon Mio - chr2L 21286660 intron Mio - chr2L 21286703 intron Mio - chr2L_5_21285001 chr2L_21285001 RAL-358 274 chr2L 21307473 21307498 chr2L 21307555 21307580 8 82 0.0 1.5 0.8 4.4 107 chr2L 21307473 intron Mio - chr2L 21307526 intron Mio - chr2L 21307580 intron Mio - chr2L_8_21305001 chr2L_21305001 RAL-358 275 chr2L 21819021 21819031 chr2L 21819116 21819125 5 94 0.0 3.0 1.5 2.0 104 chr2L 21819021 intergenic CR44786 + chr2L 21819073 intergenic CR44786 + chr2L 21819125 intergenic CR44786 + chr2L_5_21815001 chr2L_21815001 RAL-358 276 chr2L 21981695 21981711 chr2L 21990860 21990875 roo 10 9165 1.0 5.0 3.0 2.5 9180 chr2L 21981695 exon CG2528 - chr2L 21986285 intron CG2528 - chr2L 21990875 exon CG2528 - chr2L_10_21985001 chr2L_21985001 RAL-358 277 chr2L 22165514 22165546 chr2L 22165599 22165631 5 85 0.0 0.5 0.2 4.2 117 chr2L 22165514 3` UTR CG42748 + chr2L 22165572 3` UTR CG42748 + chr2L 22165631 3` UTR CG42748 + chr2L_5_22165001 chr2L_22165001 RAL-358 278 chr2L 22179543 22179574 chr2L 22179620 22179650 6 77 2.0 2.5 2.2 1.9 107 chr2L 22179543 intron CG3635 + chr2L 22179596 intron CG3635 + chr2L 22179650 intron CG3635 + chr2L_6_22175001 chr2L_22175001 RAL-358 279 chr2L 22258620 22258643 chr2L 22260744 22260765 G6 9 2124 5.0 1.5 3.2 2.1 2145 chr2L 22258620 intergenic Tif-IA + chr2L 22259692 intergenic not near genes chr2L 22260765 intergenic not near genes chr2L_9_22255001 chr2L_22255001 RAL-358 280 chr2L 22581971 22581993 chr2L 22583760 22583782 S-element 7 1789 4.5 2.0 3.2 1.7 1811 chr2L 22581971 intron CG17494 + chr2L 22582876 intron CG17494 + chr2L 22583782 intron CG17494 + chr2L_7_22580001 chr2L_22580001 RAL-358 281 chr2R 3287389 3287412 chr2R 3287689 3287710 5 300 0.0 1.0 0.5 3.3 321 chr2R 3287389 intergenic not near genes chr2R 3287550 intergenic not near genes chr2R 3287710 intergenic not near genes chr2R_5_3285001 chr2R_3285001 RAL-358 282 chr2R 3292653 3292678 chr2R 3292730 3292757 6 78 3.0 3.0 3.0 1.5 104 chr2R 3292653 intergenic not near genes chr2R 3292705 intergenic not near genes chr2R 3292757 intergenic not near genes chr2R_6_3290001 chr2R_3290001 RAL-358 283 chr2R 3293748 3293771 chr2R 3293826 3293849 5 78 0.0 1.5 0.8 2.8 101 chr2R 3293748 intergenic not near genes chr2R 3293798 intergenic not near genes chr2R 3293849 intergenic not near genes chr2R_5_3290001 chr2R_3290001 RAL-358 284 chr2R 4312954 4313120 chr2R 4313038 4313211 9 87 3.5 0.0 1.8 3.2 257 chr2R 4312954 intergenic not near genes chr2R 4313082 intergenic not near genes chr2R 4313211 intergenic not near genes chr2R_9_4310001 chr2R_4310001 RAL-358 285 chr2R 4621320 4621340 chr2R 4621860 4621880 4 540 1.0 2.0 1.5 1.6 560 chr2R 4621320 3` UTR CR44101 - chr2R 4621600 3` UTR CR44101 - chr2R 4621880 3` UTR CR44101 - chr2R_4_4620001 chr2R_4620001 RAL-358 286 chr2R 4622952 4622977 chr2R 4624111 4624136 1360 5 1159 3.5 1.0 2.2 1.6 1184 chr2R 4622952 intergenic CR44101 - chr2R 4623544 intergenic not near genes chr2R 4624136 intergenic not near genes chr2R_5_4620001 chr2R_4620001 RAL-358 287 chr2R 4624657 4624666 chr2R 4626561 4626571 Bica 4 1904 6.0 2.0 4.0 0.8 1914 chr2R 4624657 intergenic not near genes chr2R 4625614 intergenic not near genes chr2R 4626571 intergenic not near genes chr2R_4_4625001 chr2R_4625001 RAL-358 288 chr2R 4671162 4671168 chr2R 4671445 4671451 4 283 2.5 4.5 3.5 0.9 289 chr2R 4671162 intergenic not near genes chr2R 4671306 intergenic not near genes chr2R 4671451 intergenic CG17883 + chr2R_4_4670001 chr2R_4670001 RAL-358 289 chr2R 4838875 4838889 chr2R 4840398 4840412 transib2 4 1523 6.0 3.0 4.5 0.7 1537 chr2R 4838875 intergenic not near genes chr2R 4839644 intergenic not near genes chr2R 4840412 intergenic not near genes chr2R_4_4835001 chr2R_4835001 RAL-358 290 chr2R 4915789 4916018 chr2R 4915872 4916146 9 103 1.5 0.5 1.0 4.5 357 chr2R 4915789 intergenic not near genes chr2R 4915968 intergenic not near genes chr2R 4916146 intergenic not near genes chr2R_9_4915001 chr2R_4915001 RAL-358 291 chr2R 5062771 5062803 chr2R 5062865 5062897 13 94 2.5 0.0 1.2 5.9 126 chr2R 5062771 intergenic not near genes chr2R 5062834 intergenic not near genes chr2R 5062897 intergenic not near genes chr2R_13_5060001 chr2R_5060001 RAL-358 292 chr2R 5068874 5068896 chr2R 5071646 5071668 6 2772 6.5 10.0 8.2 0.7 2794 chr2R 5068874 intron TpnC41C - chr2R 5070271 intergenic TpnC41C - chr2R 5071668 intergenic not near genes chr2R_6_5070001 chr2R_5070001 RAL-358 293 chr2R 5080943 5080965 chr2R 5081055 5081079 7 113 0.5 3.5 2.0 2.3 136 chr2R 5080943 intergenic not near genes chr2R 5081011 intergenic not near genes chr2R 5081079 intergenic not near genes chr2R_7_5080001 chr2R_5080001 RAL-358 294 chr2R 5125249 5125268 chr2R 5125567 5125586 6 318 0.5 4.0 2.2 1.9 337 chr2R 5125249 intron gus - chr2R 5125418 intron gus - chr2R 5125586 intron gus - chr2R_6_5125001 chr2R_5125001 RAL-358 295 chr2R 5237362 5237371 chr2R 5237444 5237453 7 82 1.0 0.0 0.5 4.7 91 chr2R 5237362 intron Nipped-A - chr2R 5237408 intron Nipped-A - chr2R 5237453 intron Nipped-A - chr2R_7_5235001 chr2R_5235001 RAL-358 296 chr2R 5256757 5256791 chr2R 5256845 5256879 14 88 5.5 2.0 3.8 2.9 122 chr2R 5256757 intergenic not near genes chr2R 5256818 intergenic not near genes chr2R 5256879 intergenic not near genes chr2R_14_5255001 chr2R_5255001 RAL-358 297 chr2R 5491661 5491679 chr2R 5491754 5491772 5 93 2.0 2.0 2.0 1.7 111 chr2R 5491661 intron CG30440 - chr2R 5491716 intron CG30440 - chr2R 5491772 intron CG30440 - chr2R_5_5490001 chr2R_5490001 RAL-358 298 chr2R 5664300 5664313 chr2R 5664380 5664393 8 80 1.5 8.0 4.8 1.4 93 chr2R 5664300 5` UTR CR45472 + chr2R 5664346 intron CR45472 + chr2R 5664393 intron CR45472 + chr2R_8_5660001 chr2R_5660001 RAL-358 299 chr2R 5772538 5772629 chr2R 5772632 5772767 5 111 0.0 0.0 0.0 5.0 229 chr2R 5772538 3` UTR Gp210 + chr2R 5772652 3` UTR Gp210 + chr2R 5772767 3` UTR Gp210 + chr2R_5_5770001 chr2R_5770001 RAL-358 300 chr2R 5869275 5869297 chr2R 5874351 5874373 flea 10 5075 0.5 3.0 1.8 3.6 5098 chr2R 5869275 intergenic not near genes chr2R 5871824 intergenic not near genes chr2R 5874373 intergenic not near genes chr2R_10_5870001 chr2R_5870001 RAL-358 301 chr2R 5876869 5876902 chr2R 5876971 5877004 11 101 2.5 2.0 2.2 3.4 135 chr2R 5876869 intergenic not near genes chr2R 5876936 intergenic not near genes chr2R 5877004 intergenic not near genes chr2R_11_5875001 chr2R_5875001 RAL-358 302 chr2R 5902165 5902187 chr2R 5909724 5909746 17.6 5 7558 2.0 1.0 1.5 2.0 7581 chr2R 5902165 intron CG43366 + chr2R 5905956 intron CG43366 + chr2R 5909746 intron CG43366 + chr2R_5_5905001 chr2R_5905001 RAL-358 303 chr2R 5987771 5987797 chr2R 5987856 5987883 6 86 0.5 3.0 1.8 2.1 112 chr2R 5987771 intron Src42A + chr2R 5987827 intron Src42A + chr2R 5987883 intron Src42A + chr2R_6_5985001 chr2R_5985001 RAL-358 304 chr2R 6016791 6016819 chr2R 6016875 6016903 5 84 2.0 3.0 2.5 1.4 112 chr2R 6016791 intergenic not near genes chr2R 6016847 intergenic not near genes chr2R 6016903 intergenic not near genes chr2R_5_6015001 chr2R_6015001 RAL-358 305 chr2R 6096714 6096743 chr2R 6101912 6101941 BS 6 5197 5.0 1.5 3.2 1.4 5227 chr2R 6096714 intron EcR - chr2R 6099328 intron EcR - chr2R 6101941 intron EcR - chr2R_6_6095001 chr2R_6095001 RAL-358 306 chr2R 6168194 6168213 chr2R 6168276 6168295 5 82 5.5 1.0 3.2 1.2 101 chr2R 6168194 intron EcR - chr2R 6168244 intron EcR - chr2R 6168295 intron EcR - chr2R_5_6165001 chr2R_6165001 RAL-358 307 chr2R 6178128 6178144 chr2R 6178254 6178270 7 126 2.0 2.0 2.0 2.3 142 chr2R 6178128 intergenic not near genes chr2R 6178199 intergenic not near genes chr2R 6178270 intergenic not near genes chr2R_7_6175001 chr2R_6175001 RAL-358 308 chr2R 6194685 6194694 chr2R 6194768 6194777 5 83 1.5 1.0 1.2 2.3 92 chr2R 6194685 intron Ptr - chr2R 6194731 intron Ptr - chr2R 6194777 intron Ptr - chr2R_5_6190001 chr2R_6190001 RAL-358 309 chr2R 6579775 6579800 chr2R 6584861 6584886 flea 5 5086 3.5 2.0 2.8 1.3 5111 chr2R 6579775 intron jing + chr2R 6582330 intron jing + chr2R 6584886 intron jing + chr2R_5_6580001 chr2R_6580001 RAL-358 310 chr2R 6607929 6607955 chr2R 6608031 6608057 8 102 2.0 1.0 1.5 3.2 128 chr2R 6607929 intron jing + chr2R 6607993 intron jing + chr2R 6608057 intron jing + chr2R_8_6605001 chr2R_6605001 RAL-358 311 chr2R 6622148 6622162 chr2R 6622620 6622634 invader1 4 471 2.5 1.5 2.0 1.3 486 chr2R 6622148 intergenic not near genes chr2R 6622391 intergenic not near genes chr2R 6622634 intergenic not near genes chr2R_4_6620001 chr2R_6620001 RAL-358 312 chr2R 6651380 6651393 chr2R 6651494 6651507 5 113 4.0 6.0 5.0 0.8 127 chr2R 6651380 intron debcl + chr2R 6651444 intron debcl + chr2R 6651507 intron debcl + chr2R_5_6650001 chr2R_6650001 RAL-358 313 chr2R 6806792 6806819 chr2R 6806877 6806904 7 85 1.0 1.0 1.0 3.5 112 chr2R 6806792 intergenic not near genes chr2R 6806848 intergenic not near genes chr2R 6806904 intergenic not near genes chr2R_7_6805001 chr2R_6805001 RAL-358 314 chr2R 7162331 7162356 chr2R 7162419 7162444 9 88 0.0 4.0 2.0 3.0 113 chr2R 7162331 intron pk + chr2R 7162388 intron pk + chr2R 7162444 intron pk + chr2R_9_7160001 chr2R_7160001 RAL-358 315 chr2R 7177146 7177176 chr2R 7180007 7180037 5 2861 18.0 9.5 13.8 0.3 2891 chr2R 7177146 intron,intron pk +,CG11060 + chr2R 7178592 intron,exon pk +,CG33140 + chr2R 7180037 intron,exon pk +,CG33140 + chr2R_5_7175001 chr2R_7175001 RAL-358 316 chr2R 7235834 7235846 chr2R 7240926 7240938 jockey 4 5092 1.0 3.5 2.2 1.2 5104 chr2R 7235834 intergenic not near genes chr2R 7238386 intergenic not near genes chr2R 7240938 intergenic not near genes chr2R_4_7235001 chr2R_7235001 RAL-358 317 chr2R 7353386 7353416 chr2R 7353491 7353522 7 106 0.5 2.0 1.2 3.2 136 chr2R 7353386 intron Dscam1 - chr2R 7353454 intron Dscam1 - chr2R 7353522 intron Dscam1 - chr2R_7_7350001 chr2R_7350001 RAL-358 318 chr2R 7418140 7418150 chr2R 7418219 7418228 4 78 3.5 3.5 3.5 0.9 88 chr2R 7418140 intergenic not near genes chr2R 7418184 intergenic not near genes chr2R 7418228 intergenic not near genes chr2R_4_7415001 chr2R_7415001 RAL-358 319 chr2R 7563239 7563246 chr2R 7563331 7563338 6 92 0.5 3.5 2.0 2.0 99 chr2R 7563239 3` UTR Corin + chr2R 7563288 3` UTR Corin + chr2R 7563338 3` UTR Corin + chr2R_6_7560001 chr2R_7560001 RAL-358 320 chr2R 7692012 7692031 chr2R 7692092 7692112 5 81 2.5 0.0 1.2 2.3 100 chr2R 7692012 intron CG1399 - chr2R 7692062 intron CG1399 - chr2R 7692112 intron CG1399 - chr2R_5_7690001 chr2R_7690001 RAL-358 321 chr2R 7748016 7748037 chr2R 7748096 7748117 4 80 0.0 1.5 0.8 2.2 101 chr2R 7748016 intron,intron CG30497 -,CG45093 - chr2R 7748066 intron,intron CG30497 -,CG45093 - chr2R 7748117 intron,intron CG30497 -,CG45093 - chr2R_4_7745001 chr2R_7745001 RAL-358 322 chr2R 7869199 7869206 chr2R 7873984 7873992 Doc 4 4786 1.0 3.0 2.0 1.3 4793 chr2R 7869199 intron Dgk - chr2R 7871596 intron Dgk - chr2R 7873992 intron Dgk - chr2R_4_7870001 chr2R_7870001 RAL-358 323 chr2R 7890411 7890427 chr2R 7890492 7890508 6 81 1.0 2.5 1.8 2.1 97 chr2R 7890411 5` UTR CG30377 + chr2R 7890460 5` UTR CG30377 + chr2R 7890508 5` UTR CG30377 + chr2R_6_7890001 chr2R_7890001 RAL-358 324 chr2R 7942178 7942207 chr2R 7942269 7942298 6 91 1.0 2.0 1.5 2.4 120 chr2R 7942178 3` UTR CG14764 - chr2R 7942238 3` UTR CG14764 - chr2R 7942298 3` UTR CG14764 - chr2R_6_7940001 chr2R_7940001 RAL-358 325 chr2R 8014118 8014149 chr2R 8014194 8014225 7 75 1.0 1.5 1.2 3.2 107 chr2R 8014118 intergenic CG14762 - chr2R 8014172 intergenic CG14762 - chr2R 8014225 intergenic CG14762 - chr2R_7_8010001 chr2R_8010001 RAL-358 326 chr2R 8015666 8015684 chr2R 8017689 8017707 7 2023 0.5 5.5 3.0 1.8 2041 chr2R 8015666 intergenic mir-4981 + chr2R 8016686 intergenic not near genes chr2R 8017707 intergenic not near genes chr2R_7_8015001 chr2R_8015001 RAL-358 327 chr2R 8187331 8187361 chr2R 8187417 8187448 5 87 2.0 0.5 1.2 2.3 117 chr2R 8187331 intron LRP1 + chr2R 8187390 intron LRP1 + chr2R 8187448 intron LRP1 + chr2R_5_8185001 chr2R_8185001 RAL-358 328 chr2R 8329448 8329472 chr2R 8329532 8329556 4 84 4.0 2.5 3.2 1.0 108 chr2R 8329448 intron pdm3 + chr2R 8329502 intron pdm3 + chr2R 8329556 intron pdm3 + chr2R_4_8325001 chr2R_8325001 RAL-358 329 chr2R 8330860 8330882 chr2R 8331346 8331368 roo 6 486 1.5 1.5 1.5 2.4 508 chr2R 8330860 intron pdm3 + chr2R 8331114 intron pdm3 + chr2R 8331368 intron pdm3 + chr2R_6_8330001 chr2R_8330001 RAL-358 330 chr2R 8398209 8398244 chr2R 8402990 8403025 Doc 7 4780 1.0 0.5 0.8 3.9 4816 chr2R 8398209 intron CG2121 - chr2R 8400617 intron CG2121 - chr2R 8403025 intron CG2121 - chr2R_7_8400001 chr2R_8400001 RAL-358 331 chr2R 8452032 8452040 chr2R 8452115 8452123 8 83 5.0 0.5 2.8 2.1 91 chr2R 8452032 intergenic Mal-A1 - chr2R 8452078 intergenic Mal-A1 - chr2R 8452123 intergenic Mal-A1 - chr2R_8_8450001 chr2R_8450001 RAL-358 332 chr2R 8508758 8508787 chr2R 8508841 8508870 7 83 2.5 1.5 2.0 2.3 112 chr2R 8508758 intron mtt - chr2R 8508814 intron mtt - chr2R 8508870 intron mtt - chr2R_7_8505001 chr2R_8505001 RAL-358 333 chr2R 8517711 8517738 chr2R 8517813 8517840 4 102 1.5 1.0 1.2 1.8 129 chr2R 8517711 intron mtt - chr2R 8517776 intron mtt - chr2R 8517840 intron mtt - chr2R_4_8515001 chr2R_8515001 RAL-358 334 chr2R 8566031 8566058 chr2R 8566983 8567010 1360 7 952 4.0 3.0 3.5 1.6 979 chr2R 8566031 5` UTR Cyp6a14 - chr2R 8566520 5` UTR Cyp6a14 - chr2R 8567010 5` UTR Cyp6a14 - chr2R_7_8565001 chr2R_8565001 RAL-358 335 chr2R 8714717 8714722 chr2R 8714801 8714809 4 86 0.0 4.0 2.0 1.3 92 chr2R 8714717 3` UTR PGRP-SC1b + chr2R 8714763 3` UTR PGRP-SC1b + chr2R 8714809 3` UTR PGRP-SC1b + chr2R_4_8710001 chr2R_8710001 RAL-358 336 chr2R 8738442 8738457 chr2R 8738553 8738568 5 111 2.5 2.5 2.5 1.4 126 chr2R 8738442 intron CG8740 + chr2R 8738505 intron CG8740 + chr2R 8738568 intron CG8740 + chr2R_5_8735001 chr2R_8735001 RAL-358 337 chr2R 8808292 8808307 chr2R 8808371 8808386 4 79 1.0 2.0 1.5 1.6 94 chr2R 8808292 intron sns + chr2R 8808339 intron sns + chr2R 8808386 intron sns + chr2R_4_8805001 chr2R_8805001 RAL-358 338 chr2R 8932127 8932138 chr2R 8934243 8934253 4 2116 8.5 1.0 4.8 0.7 2126 chr2R 8932127 exon PAN2 + chr2R 8933190 intergenic PAN2 +,CG13749 + chr2R 8934253 3` UTR CG13749 + chr2R_4_8930001 chr2R_8930001 RAL-358 339 chr2R 9183131 9183159 chr2R 9183212 9183241 5 82 1.5 0.5 1.0 2.5 110 chr2R 9183131 intron ltd - chr2R 9183186 intron ltd - chr2R 9183241 intron ltd - chr2R_5_9180001 chr2R_9180001 RAL-358 340 chr2R 9267977 9268013 chr2R 9268063 9268099 8 86 1.5 0.5 1.0 4.0 122 chr2R 9267977 intron Pkn - chr2R 9268038 intron Pkn - chr2R 9268099 intron Pkn - chr2R_8_9265001 chr2R_9265001 RAL-358 341 chr2R 9352255 9352256 chr2R 9361404 9361405 roo 4 9149 2.5 4.0 3.2 1.0 9150 chr2R 9352255 intron CG13954 - chr2R 9356830 intron CG13954 - chr2R 9361405 intron CG13954 - chr2R_4_9355001 chr2R_9355001 RAL-358 342 chr2R 9368126 9368151 chr2R 9368202 9368226 8 76 4.5 0.0 2.2 2.5 100 chr2R 9368126 intron CG13954 - chr2R 9368176 intron CG13954 - chr2R 9368226 intron CG13954 - chr2R_8_9365001 chr2R_9365001 RAL-358 343 chr2R 9517882 9517917 chr2R 9517985 9518019 5 102 0.5 1.5 1.0 2.5 137 chr2R 9517882 intron brp + chr2R 9517950 intron brp + chr2R 9518019 intron brp + chr2R_5_9515001 chr2R_9515001 RAL-358 344 chr2R 9551222 9551248 chr2R 9551319 9551344 5 97 0.0 0.0 0.0 5.0 122 chr2R 9551222 intergenic not near genes chr2R 9551283 intergenic not near genes chr2R 9551344 intergenic not near genes chr2R_5_9550001 chr2R_9550001 RAL-358 345 chr2R 9617778 9617805 chr2R 9618036 9618063 5 258 3.0 1.0 2.0 1.7 285 chr2R 9617778 intron Mmp2 - chr2R 9617920 intron Mmp2 - chr2R 9618063 intron Mmp2 - chr2R_5_9615001 chr2R_9615001 RAL-358 346 chr2R 9694758 9694781 chr2R 9694838 9694855 9 78 3.5 1.0 2.2 2.8 97 chr2R 9694758 intergenic not near genes chr2R 9694806 intergenic not near genes chr2R 9694855 intergenic not near genes chr2R_9_9690001 chr2R_9690001 RAL-358 347 chr2R 9945442 9945473 chr2R 9945638 9945668 BS 4 196 0.0 3.5 1.8 1.4 226 chr2R 9945442 intron Mef2 - chr2R 9945555 intron Mef2 - chr2R 9945668 intron Mef2 - chr2R_4_9945001 chr2R_9945001 RAL-358 348 chr2R 9975924 9975931 chr2R 9976039 9976045 8 114 2.5 0.5 1.5 3.2 121 chr2R 9975924 intergenic not near genes chr2R 9975984 intergenic not near genes chr2R 9976045 intergenic not near genes chr2R_8_9975001 chr2R_9975001 RAL-358 349 chr2R 10001364 10001376 chr2R 10001442 10001454 5 78 2.0 3.0 2.5 1.4 90 chr2R 10001364 intron Pka-R2 - chr2R 10001409 intron Pka-R2 - chr2R 10001454 intron Pka-R2 - chr2R_5_10000001 chr2R_10000001 RAL-358 350 chr2R 10086927 10086928 chr2R 10087023 10087024 4 96 2.0 4.0 3.0 1.0 97 chr2R 10086927 intron,exon CG2269 +,sut4 - chr2R 10086976 intron,5` UTR CG2269 +,sut4 - chr2R 10087024 intron,5` UTR CG2269 +,sut4 - chr2R_4_10085001 chr2R_10085001 RAL-358 351 chr2R 10132208 10132216 chr2R 10132288 10132296 5 80 1.5 4.5 3.0 1.2 88 chr2R 10132208 intron gem + chr2R 10132252 intron gem + chr2R 10132296 intron gem + chr2R_5_10130001 chr2R_10130001 RAL-358 352 chr2R 10266498 10266528 chr2R 10266589 10266619 5 90 1.0 0.0 0.5 3.3 121 chr2R 10266498 intron CG12910 + chr2R 10266558 intron CG12910 + chr2R 10266619 intron CG12910 + chr2R_5_10265001 chr2R_10265001 RAL-358 353 chr2R 10303529 10303550 chr2R 10303629 10303650 5 100 4.0 1.0 2.5 1.4 121 chr2R 10303529 intron CAP + chr2R 10303590 intron CAP + chr2R 10303650 intron CAP + chr2R_5_10300001 chr2R_10300001 RAL-358 354 chr2R 10319722 10319744 chr2R 10319814 10319836 6 92 3.5 4.0 3.8 1.2 114 chr2R 10319722 intron Ndg + chr2R 10319779 intron Ndg + chr2R 10319836 intron Ndg + chr2R_6_10315001 chr2R_10315001 RAL-358 355 chr2R 10429022 10429044 chr2R 10429099 10429119 7 76 1.5 0.5 1.0 3.5 97 chr2R 10429022 intergenic not near genes chr2R 10429070 intergenic not near genes chr2R 10429119 intergenic not near genes chr2R_7_10425001 chr2R_10425001 RAL-358 356 chr2R 10572024 10572030 chr2R 10572212 10572218 5 190 2.0 0.5 1.2 2.3 194 chr2R 10572024 intron psq + chr2R 10572121 intron psq + chr2R 10572218 intron psq + chr2R_5_10570001 chr2R_10570001 RAL-358 357 chr2R 10781413 10781422 chr2R 10781773 10781779 6 359 4.0 1.5 2.8 1.6 366 chr2R 10781413 intron CG33144 - chr2R 10781596 intron CG33144 - chr2R 10781779 intron CG33144 - chr2R_6_10780001 chr2R_10780001 RAL-358 358 chr2R 10862577 10862598 chr2R 10862687 10862709 10 111 0.5 0.0 0.2 8.3 132 chr2R 10862577 intron CG30015 - chr2R 10862643 intron CG30015 - chr2R 10862709 intron CG30015 - chr2R_10_10860001 chr2R_10860001 RAL-358 359 chr2R 10989478 10989483 chr2R 10989557 10989562 5 79 0.0 2.5 1.2 2.3 84 chr2R 10989478 intron luna - chr2R 10989520 intron luna - chr2R 10989562 intron luna - chr2R_5_10985001 chr2R_10985001 RAL-358 360 chr2R 11171528 11171556 chr2R 11171685 11171713 5 157 3.5 0.5 2.0 1.7 185 chr2R 11171528 intron,intron CG13229 -,shn + chr2R 11171620 intron,intron CG13229 -,shn + chr2R 11171713 intron,intron CG13229 -,shn + chr2R_5_11170001 chr2R_11170001 RAL-358 361 chr2R 11179269 11179287 chr2R 11179355 11179373 7 86 2.0 3.0 2.5 2.0 104 chr2R 11179269 intron shn + chr2R 11179321 intron shn + chr2R 11179373 intron shn + chr2R_7_11175001 chr2R_11175001 RAL-358 362 chr2R 11249175 11249187 chr2R 11249301 11249313 7 126 2.5 0.0 1.2 3.2 138 chr2R 11249175 intergenic CG43112 + chr2R 11249244 intergenic CG43112 + chr2R 11249313 intergenic CG43112 + chr2R_7_11245001 chr2R_11245001 RAL-358 363 chr2R 11472648 11472679 chr2R 11473845 11473876 pogo 13 1197 1.0 2.5 1.8 4.6 1228 chr2R 11472648 intergenic not near genes chr2R 11473262 intergenic not near genes chr2R 11473876 intergenic not near genes chr2R_13_11470001 chr2R_11470001 RAL-358 364 chr2R 11863858 11863887 chr2R 11863945 11863974 4 86 1.5 0.0 0.8 2.2 116 chr2R 11863858 intergenic CG42531 + chr2R 11863916 intergenic CG42531 + chr2R 11863974 intergenic CG42531 + chr2R_4_11860001 chr2R_11860001 RAL-358 365 chr2R 11951347 11951373 chr2R 11951424 11951450 6 77 0.5 0.5 0.5 4.0 103 chr2R 11951347 intron CG13188 + chr2R 11951398 intron CG13188 + chr2R 11951450 intron CG13188 + chr2R_6_11950001 chr2R_11950001 RAL-358 366 chr2R 12126865 12126896 chr2R 12126954 12126984 10 89 3.0 2.5 2.8 2.6 119 chr2R 12126865 intergenic not near genes chr2R 12126924 intergenic not near genes chr2R 12126984 intergenic not near genes chr2R_10_12125001 chr2R_12125001 RAL-358 367 chr2R 12186012 12186035 chr2R 12186107 12186130 11 95 1.0 2.5 1.8 3.9 118 chr2R 12186012 intron Cyp6g1 + chr2R 12186071 intron Cyp6g1 + chr2R 12186130 intron Cyp6g1 + chr2R_11_12185001 chr2R_12185001 RAL-358 368 chr2R 12187471 12187508 chr2R 12190087 12190124 23 2616 47.5 38.5 43.0 0.5 2653 chr2R 12187471 exon Cyp6g1 + chr2R 12188798 exon Cyp6g2 - chr2R 12190124 exon Cyp6g2 - chr2R_23_12185001 chr2R_12185001 RAL-358 369 chr2R 12363380 12363414 chr2R 12363812 12363846 19 431 1.0 1.5 1.2 8.6 466 chr2R 12363380 intergenic CG30043 + chr2R 12363613 intergenic CG30043 + chr2R 12363846 intergenic not near genes chr2R_19_12360001 chr2R_12360001 RAL-358 370 chr2R 12540482 12540492 chr2R 12540564 12540575 4 83 2.0 1.5 1.8 1.4 93 chr2R 12540482 intron fra + chr2R 12540528 intron fra + chr2R 12540575 intron fra + chr2R_4_12540001 chr2R_12540001 RAL-358 371 chr2R 12602816 12602834 chr2R 12602900 12602918 4 84 1.0 0.5 0.8 2.2 102 chr2R 12602816 intron Amph + chr2R 12602867 intron Amph + chr2R 12602918 intron Amph + chr2R_4_12600001 chr2R_12600001 RAL-358 372 chr2R 12643792 12643814 chr2R 12643868 12643891 4 76 5.0 1.0 3.0 1.0 99 chr2R 12643792 intron CG8785 - chr2R 12643842 intron CG8785 - chr2R 12643891 exon CG8785 - chr2R_4_12640001 chr2R_12640001 RAL-358 373 chr2R 12666034 12666053 chr2R 12666122 12666140 8 88 0.0 2.0 1.0 4.0 106 chr2R 12666034 intron nemy - chr2R 12666087 intron nemy - chr2R 12666140 intron nemy - chr2R_8_12665001 chr2R_12665001 RAL-358 374 chr2R 12819453 12819475 chr2R 12824524 12824544 jockey 5 5069 1.5 3.5 2.5 1.4 5091 chr2R 12819453 intergenic not near genes chr2R 12821998 intergenic not near genes chr2R 12824544 intergenic not near genes chr2R_5_12820001 chr2R_12820001 RAL-358 375 chr2R 13136843 13136860 chr2R 13141641 13141658 Doc 4 4798 4.0 1.0 2.5 1.1 4815 chr2R 13136843 exon Cap-G + chr2R 13139250 intron Cap-G + chr2R 13141658 intron Cap-G + chr2R_4_13135001 chr2R_13135001 RAL-358 376 chr2R 13162773 13162794 chr2R 13162857 13162878 5 84 1.5 0.0 0.8 2.8 105 chr2R 13162773 3` UTR Nrk + chr2R 13162826 3` UTR Nrk + chr2R 13162878 3` UTR Nrk + chr2R_5_13160001 chr2R_13160001 RAL-358 377 chr2R 13243371 13243404 chr2R 13243453 13243486 10 82 1.0 0.5 0.8 5.6 115 chr2R 13243371 intergenic not near genes chr2R 13243428 intergenic not near genes chr2R 13243486 intergenic not near genes chr2R_10_13240001 chr2R_13240001 RAL-358 378 chr2R 13431507 13431519 chr2R 13431585 13431598 5 79 2.5 3.5 3.0 1.2 91 chr2R 13431507 intron CG42321 - chr2R 13431552 intron CG42321 - chr2R 13431598 intron CG42321 - chr2R_5_13430001 chr2R_13430001 RAL-358 379 chr2R 13432934 13432965 chr2R 13433010 13433041 8 76 2.0 2.0 2.0 2.7 107 chr2R 13432934 intron CG42321 - chr2R 13432988 intron CG42321 - chr2R 13433041 intron,5` UTR CG42321 -,CG30065 + chr2R_8_13430001 chr2R_13430001 RAL-358 380 chr2R 13566264 13566283 chr2R 13566343 13566363 7 80 1.5 0.5 1.0 3.5 99 chr2R 13566264 intergenic not near genes chr2R 13566314 intergenic not near genes chr2R 13566363 intergenic not near genes chr2R_7_13565001 chr2R_13565001 RAL-358 381 chr2R 13580513 13580531 chr2R 13580862 13580881 jockey 5 350 0.0 3.0 1.5 2.0 368 chr2R 13580513 3` UTR CG6191 - chr2R 13580697 3` UTR,3` UTR CG6191 -,CG45088 - chr2R 13580881 3` UTR,3` UTR CG6191 -,CG45088 - chr2R_5_13580001 chr2R_13580001 RAL-358 382 chr2R 13768981 13769009 chr2R 13769080 13769108 10 99 1.5 3.5 2.5 2.9 127 chr2R 13768981 intergenic not near genes chr2R 13769044 intergenic not near genes chr2R 13769108 intergenic not near genes chr2R_10_13765001 chr2R_13765001 RAL-358 383 chr2R 13986880 13986912 chr2R 13986969 13987001 10 89 1.0 1.0 1.0 5.0 121 chr2R 13986880 intron RN-tre - chr2R 13986940 intron RN-tre - chr2R 13987001 intron RN-tre - chr2R_10_13985001 chr2R_13985001 RAL-358 384 chr2R 14086649 14086663 chr2R 14086728 14086742 5 79 0.0 3.5 1.8 1.8 93 chr2R 14086649 intron Prosap - chr2R 14086696 intron Prosap - chr2R 14086742 intron Prosap - chr2R_5_14085001 chr2R_14085001 RAL-358 385 chr2R 14142449 14142475 chr2R 14142539 14142565 14 90 2.5 3.5 3.0 3.5 116 chr2R 14142449 intergenic not near genes chr2R 14142507 intergenic not near genes chr2R 14142565 intergenic not near genes chr2R_14_14140001 chr2R_14140001 RAL-358 386 chr2R 14277579 14277607 chr2R 14277661 14277684 6 81 2.0 1.0 1.5 2.4 105 chr2R 14277579 5` UTR Ih + chr2R 14277632 5` UTR Ih + chr2R 14277684 5` UTR Ih + chr2R_6_14275001 chr2R_14275001 RAL-358 387 chr2R 14521976 14521977 chr2R 14522124 14522127 4 150 4.5 2.0 3.2 1.0 151 chr2R 14521976 intergenic not near genes chr2R 14522052 intergenic not near genes chr2R 14522127 intergenic not near genes chr2R_4_14520001 chr2R_14520001 RAL-358 388 chr2R 14524847 14524856 chr2R 14524942 14524951 4 96 0.5 0.0 0.2 3.3 104 chr2R 14524847 intergenic not near genes chr2R 14524899 intergenic not near genes chr2R 14524951 intergenic not near genes chr2R_4_14520001 chr2R_14520001 RAL-358 389 chr2R 14565567 14565591 chr2R 14565644 14565668 4 77 2.5 3.5 3.0 1.0 101 chr2R 14565567 intron ttv + chr2R 14565618 intron ttv + chr2R 14565668 intron ttv + chr2R_4_14565001 chr2R_14565001 RAL-358 390 chr2R 14610253 14610277 chr2R 14610345 14610369 8 92 2.0 0.5 1.2 3.6 116 chr2R 14610253 exon Su(var)2-HP2 - chr2R 14610311 exon Su(var)2-HP2 - chr2R 14610369 exon Su(var)2-HP2 - chr2R_8_14610001 chr2R_14610001 RAL-358 391 chr2R 14699441 14699454 chr2R 14699822 14699836 13 383 5.0 3.0 4.0 2.6 395 chr2R 14699441 intron mspo - chr2R 14699638 intron mspo - chr2R 14699836 intron mspo - chr2R_13_14695001 chr2R_14695001 RAL-358 392 chr2R 14842393 14842393 chr2R 14842488 14842489 4 96 0.5 1.5 1.0 2.0 96 chr2R 14842393 intergenic NaPi-T - chr2R 14842441 intergenic NaPi-T - chr2R 14842489 intergenic NaPi-T - chr2R_4_14840001 chr2R_14840001 RAL-358 393 chr2R 15004726 15004753 chr2R 15005055 15005080 jockey 4 328 3.0 0.0 1.5 1.6 354 chr2R 15004726 intergenic not near genes chr2R 15004903 intergenic not near genes chr2R 15005080 intergenic not near genes chr2R_4_15000001 chr2R_15000001 RAL-358 394 chr2R 15084985 15084990 chr2R 15092034 15092039 297 5 7048 3.0 1.5 2.2 1.6 7054 chr2R 15084985 intergenic not near genes chr2R 15088512 intergenic not near genes chr2R 15092039 5` UTR CR44457 + chr2R_5_15085001 chr2R_15085001 RAL-358 395 chr2R 15137967 15137985 chr2R 15138047 15138062 5 78 1.0 0.0 0.5 3.3 95 chr2R 15137967 intron chn + chr2R 15138014 intron chn + chr2R 15138062 intron chn + chr2R_5_15135001 chr2R_15135001 RAL-358 396 chr2R 15196101 15196124 chr2R 15196197 15196220 6 96 3.0 1.0 2.0 2.0 119 chr2R 15196101 intergenic not near genes chr2R 15196160 intergenic not near genes chr2R 15196220 intergenic not near genes chr2R_6_15195001 chr2R_15195001 RAL-358 397 chr2R 15410793 15410798 chr2R 15410985 15410989 5 192 1.0 4.0 2.5 1.4 196 chr2R 15410793 intron CG43729 + chr2R 15410891 intron CG43729 + chr2R 15410989 intron CG43729 + chr2R_5_15410001 chr2R_15410001 RAL-358 398 chr2R 15429290 15429306 chr2R 15429509 15429525 6 219 2.0 1.5 1.8 2.1 235 chr2R 15429290 intron CG43729 + chr2R 15429408 intron CG43729 + chr2R 15429525 intron CG43729 + chr2R_6_15425001 chr2R_15425001 RAL-358 399 chr2R 15558563 15558729 chr2R 15558642 15558844 7 99 0.0 2.5 1.2 3.2 281 chr2R 15558563 intron CG12963 + chr2R 15558704 intron CG12963 + chr2R 15558844 intron CG12963 + chr2R_7_15555001 chr2R_15555001 RAL-358 400 chr2R 15645678 15645681 chr2R 15645774 15645777 4 96 0.5 0.0 0.2 3.3 99 chr2R 15645678 intron CG42524 + chr2R 15645728 intron CG42524 + chr2R 15645777 intron CG42524 + chr2R_4_15645001 chr2R_15645001 RAL-358 401 chr2R 15700237 15700268 chr2R 15700351 15700383 8 115 2.5 0.0 1.2 3.6 146 chr2R 15700237 intron,5` UTR CG30080 -,CG42662 - chr2R 15700310 intron,5` UTR CG30080 -,CG42662 - chr2R 15700383 intron,5` UTR CG30080 -,CG42662 - chr2R_8_15700001 chr2R_15700001 RAL-358 402 chr2R 15749296 15749321 chr2R 15749380 15749403 6 84 1.0 3.5 2.2 1.9 107 chr2R 15749296 intron CG30089 + chr2R 15749350 intron CG30089 + chr2R 15749403 intron CG30089 + chr2R_6_15745001 chr2R_15745001 RAL-358 403 chr2R 15833523 15833553 chr2R 15833610 15833640 10 86 2.5 0.5 1.5 4.0 117 chr2R 15833523 intron,intron tun +,Poxn - chr2R 15833582 intron,intron tun +,Poxn - chr2R 15833640 intron,intron tun +,Poxn - chr2R_10_15830001 chr2R_15830001 RAL-358 404 chr2R 15883317 15883340 chr2R 15883473 15883496 5 156 0.5 1.0 0.8 2.8 179 chr2R 15883317 intron sli - chr2R 15883406 intron sli - chr2R 15883496 intron sli - chr2R_5_15880001 chr2R_15880001 RAL-358 405 chr2R 15891829 15891834 chr2R 15891905 15891910 4 76 0.5 5.0 2.8 1.1 81 chr2R 15891829 intron sli - chr2R 15891870 intron sli - chr2R 15891910 intron sli - chr2R_4_15890001 chr2R_15890001 RAL-358 406 chr2R 15898885 15898911 chr2R 15898983 15899009 6 98 1.5 1.0 1.2 2.7 124 chr2R 15898885 intron sli - chr2R 15898947 intron sli - chr2R 15899009 intron sli - chr2R_6_15895001 chr2R_15895001 RAL-358 407 chr2R 15951854 15951865 chr2R 15951929 15951941 6 76 0.0 4.5 2.2 1.9 87 chr2R 15951854 intron Strn-Mlck - chr2R 15951898 intron Strn-Mlck - chr2R 15951941 intron Strn-Mlck - chr2R_6_15950001 chr2R_15950001 RAL-358 408 chr2R 16131231 16131255 chr2R 16131325 16131349 5 94 2.0 1.5 1.8 1.8 118 chr2R 16131231 intron spin + chr2R 16131290 intron spin + chr2R 16131349 intron spin + chr2R_5_16130001 chr2R_16130001 RAL-358 409 chr2R 16489265 16489291 chr2R 16489349 16489375 9 84 0.5 1.0 0.8 5.0 110 chr2R 16489265 intergenic CG33459 + chr2R 16489320 intergenic CG33459 + chr2R 16489375 intergenic CG33459 + chr2R_9_16485001 chr2R_16485001 RAL-358 410 chr2R 16518048 16518057 chr2R 16518124 16518133 4 76 1.5 0.5 1.0 2.0 85 chr2R 16518048 intron Sema-2a + chr2R 16518090 intron Sema-2a + chr2R 16518133 intron Sema-2a + chr2R_4_16515001 chr2R_16515001 RAL-358 411 chr2R 16577912 16577930 chr2R 16578317 16578336 4 406 1.5 3.0 2.2 1.2 424 chr2R 16577912 intergenic not near genes chr2R 16578124 intergenic not near genes chr2R 16578336 intergenic not near genes chr2R_4_16575001 chr2R_16575001 RAL-358 412 chr2R 16617058 16617090 chr2R 16617137 16617169 5 79 1.0 1.0 1.0 2.5 111 chr2R 16617058 intron CG5065 + chr2R 16617114 intron CG5065 + chr2R 16617169 intron CG5065 + chr2R_5_16615001 chr2R_16615001 RAL-358 413 chr2R 16619991 16620000 chr2R 16620072 16620081 7 81 2.5 0.0 1.2 3.2 90 chr2R 16619991 intron CG5065 + chr2R 16620036 intron CG5065 + chr2R 16620081 intron CG5065 + chr2R_7_16620001 chr2R_16620001 RAL-358 414 chr2R 16705255 16705259 chr2R 16705383 16705387 4 128 1.0 3.5 2.2 1.2 132 chr2R 16705255 intron CG30463 - chr2R 16705321 intron CG30463 - chr2R 16705387 intron CG30463 - chr2R_4_16705001 chr2R_16705001 RAL-358 415 chr2R 16771420 16771453 chr2R 16771504 16771537 8 84 2.5 2.5 2.5 2.3 117 chr2R 16771420 intron unc-104 - chr2R 16771478 intron unc-104 - chr2R 16771537 intron unc-104 - chr2R_8_16770001 chr2R_16770001 RAL-358 416 chr2R 16772109 16772124 chr2R 16772198 16772213 5 89 1.5 3.0 2.2 1.6 104 chr2R 16772109 intron unc-104 - chr2R 16772161 intron unc-104 - chr2R 16772213 intron unc-104 - chr2R_5_16770001 chr2R_16770001 RAL-358 417 chr2R 16785138 16785160 chr2R 16785221 16785243 9 83 2.0 6.0 4.0 1.8 105 chr2R 16785138 intron CG5522 + chr2R 16785190 intron CG5522 + chr2R 16785243 intron CG5522 + chr2R_9_16785001 chr2R_16785001 RAL-358 418 chr2R 16805731 16805756 chr2R 16806820 16806845 5 1089 0.0 1.0 0.5 3.3 1114 chr2R 16805731 intergenic not near genes chr2R 16806288 intergenic not near genes chr2R 16806845 intergenic not near genes chr2R_5_16805001 chr2R_16805001 RAL-358 419 chr2R 16918235 16918266 chr2R 16918312 16918343 4 77 1.5 2.5 2.0 1.3 108 chr2R 16918235 intergenic not near genes chr2R 16918289 intergenic not near genes chr2R 16918343 intergenic not near genes chr2R_4_16915001 chr2R_16915001 RAL-358 420 chr2R 17236506 17236540 chr2R 17241710 17241744 copia 8 5204 1.5 1.0 1.2 3.6 5238 chr2R 17236506 intron mbl + chr2R 17239125 intron mbl + chr2R 17241744 intron mbl + chr2R_8_17235001 chr2R_17235001 RAL-358 421 chr2R 17459005 17459037 chr2R 17459090 17459122 10 85 0.0 1.5 0.8 5.6 117 chr2R 17459005 intron CG14478 + chr2R 17459064 intron CG14478 + chr2R 17459122 intron CG14478 + chr2R_10_17455001 chr2R_17455001 RAL-358 422 chr2R 17784031 17784047 chr2R 17784269 17784288 pogo 7 240 2.0 4.5 3.2 1.7 257 chr2R 17784031 intergenic mir-31a - chr2R 17784160 intergenic mir-31a - chr2R 17784288 intergenic mir-31a - chr2R_7_17780001 chr2R_17780001 RAL-358 423 chr2R 17937520 17937525 chr2R 17937600 17937604 5 79 6.0 1.5 3.8 1.0 84 chr2R 17937520 intergenic not near genes chr2R 17937562 intergenic not near genes chr2R 17937604 intergenic not near genes chr2R_5_17935001 chr2R_17935001 RAL-358 424 chr2R 17937526 17937537 chr2R 17937599 17937617 4 78 4.5 1.5 3.0 1.0 91 chr2R 17937526 intergenic not near genes chr2R 17937572 intergenic not near genes chr2R 17937617 intergenic not near genes chr2R_4_17935001 chr2R_17935001 RAL-358 425 chr2R 18308283 18308313 chr2R 18308388 18308419 10 106 2.0 1.0 1.5 4.0 136 chr2R 18308283 intron sbb - chr2R 18308351 intron sbb - chr2R 18308419 intron sbb - chr2R_10_18305001 chr2R_18305001 RAL-358 426 chr2R 18408282 18408315 chr2R 18408402 18408435 8 120 1.5 0.5 1.0 4.0 153 chr2R 18408282 exon GstE8 + chr2R 18408358 exon GstE8 + chr2R 18408435 exon GstE8 + chr2R_8_18405001 chr2R_18405001 RAL-358 427 chr2R 18575808 18575831 chr2R 18581995 18582017 3S18 4 6186 1.0 2.5 1.8 1.4 6209 chr2R 18575808 intron GEFmeso - chr2R 18578912 intron GEFmeso - chr2R 18582017 intron GEFmeso - chr2R_4_18575001 chr2R_18575001 RAL-358 428 chr2R 18590881 18590901 chr2R 18600033 18600053 roo 4 9152 2.0 1.0 1.5 1.6 9172 chr2R 18590881 intron GEFmeso - chr2R 18595467 intron GEFmeso - chr2R 18600053 intron GEFmeso - chr2R_4_18595001 chr2R_18595001 RAL-358 429 chr2R 18738215 18738237 chr2R 18738291 18738313 5 76 1.5 0.0 0.8 2.8 98 chr2R 18738215 intron Hs3st-A + chr2R 18738264 intron Hs3st-A + chr2R 18738313 intron Hs3st-A + chr2R_5_18735001 chr2R_18735001 RAL-358 430 chr2R 18778218 18778226 chr2R 18778308 18778316 4 90 3.5 2.5 3.0 1.0 98 chr2R 18778218 intergenic not near genes chr2R 18778267 intergenic not near genes chr2R 18778316 intergenic not near genes chr2R_4_18775001 chr2R_18775001 RAL-358 431 chr2R 18871649 18871663 chr2R 18871734 18871748 7 85 3.0 0.0 1.5 2.8 99 chr2R 18871649 intergenic not near genes chr2R 18871698 intergenic not near genes chr2R 18871748 intergenic not near genes chr2R_7_18870001 chr2R_18870001 RAL-358 432 chr2R 18926517 18926529 chr2R 18926604 18926616 5 87 0.0 1.5 0.8 2.8 99 chr2R 18926517 intron sano + chr2R 18926566 intron sano + chr2R 18926616 intron sano + chr2R_5_18925001 chr2R_18925001 RAL-358 433 chr2R 18964930 18964948 chr2R 18965006 18965023 4 76 0.5 2.0 1.2 1.8 93 chr2R 18964930 intergenic not near genes chr2R 18964976 intergenic not near genes chr2R 18965023 intergenic not near genes chr2R_4_18960001 chr2R_18960001 RAL-358 434 chr2R 19026049 19026061 chr2R 19026189 19026201 4 140 3.0 0.0 1.5 1.6 152 chr2R 19026049 intron 5-HT1B - chr2R 19026125 intron 5-HT1B - chr2R 19026201 intron 5-HT1B - chr2R_4_19025001 chr2R_19025001 RAL-358 435 chr2R 19081152 19081166 chr2R 19081344 19081358 4 192 3.5 1.0 2.2 1.2 206 chr2R 19081152 intron 5-HT1A + chr2R 19081255 intron 5-HT1A + chr2R 19081358 intron 5-HT1A + chr2R_4_19080001 chr2R_19080001 RAL-358 436 chr2R 19088398 19088421 chr2R 19088747 19088770 4 349 0.5 0.5 0.5 2.7 372 chr2R 19088398 intron 5-HT1A + chr2R 19088584 intron 5-HT1A + chr2R 19088770 intron 5-HT1A + chr2R_4_19085001 chr2R_19085001 RAL-358 437 chr2R 19359035 19359067 chr2R 19359118 19359150 6 82 1.5 0.5 1.0 3.0 115 chr2R 19359035 intron CG11961 + chr2R 19359092 intron CG11961 + chr2R 19359150 intron CG11961 + chr2R_6_19355001 chr2R_19355001 RAL-358 438 chr2R 19714706 19714728 chr2R 19714782 19714804 7 76 0.0 0.5 0.2 5.8 98 chr2R 19714706 3` UTR CG8517 + chr2R 19714755 3` UTR CG8517 + chr2R 19714804 3` UTR CG8517 + chr2R_7_19710001 chr2R_19710001 RAL-358 439 chr2R 19776596 19776614 chr2R 19779918 19779937 jockey 4 3323 0.0 2.5 1.2 1.8 3341 chr2R 19776596 intergenic not near genes chr2R 19778266 intergenic not near genes chr2R 19779937 intergenic not near genes chr2R_4_19775001 chr2R_19775001 RAL-358 440 chr2R 19957431 19957462 chr2R 19962633 19962664 copia 6 5202 1.5 1.0 1.2 2.7 5233 chr2R 19957431 intergenic CG44623 + chr2R 19960048 intergenic not near genes chr2R 19962664 intergenic not near genes chr2R_6_19960001 chr2R_19960001 RAL-358 441 chr2R 20069245 20069266 chr2R 20071875 20071896 opus 5 2630 3.5 0.0 1.8 1.8 2651 chr2R 20069245 intergenic not near genes chr2R 20070570 intergenic not near genes chr2R 20071896 intergenic not near genes chr2R_5_20070001 chr2R_20070001 RAL-358 442 chr2R 20194689 20194722 chr2R 20195082 20195115 5 393 2.5 1.5 2.0 1.7 426 chr2R 20194689 intergenic not near genes chr2R 20194902 intergenic not near genes chr2R 20195115 intergenic not near genes chr2R_5_20190001 chr2R_20190001 RAL-358 443 chr2R 20523039 20523071 chr2R 20523150 20523182 4 111 1.0 2.5 1.8 1.4 143 chr2R 20523039 intergenic not near genes chr2R 20523110 intergenic not near genes chr2R 20523182 intergenic not near genes chr2R_4_20520001 chr2R_20520001 RAL-358 444 chr2R 20572579 20572585 chr2R 20572669 20572675 4 90 0.0 1.5 0.8 2.2 96 chr2R 20572579 intron qsm - chr2R 20572627 intron qsm - chr2R 20572675 intron qsm - chr2R_4_20570001 chr2R_20570001 RAL-358 445 chr2R 20783311 20783332 chr2R 20788083 20788104 F-element 7 4772 1.0 2.5 1.8 2.5 4793 chr2R 20783311 intergenic not near genes chr2R 20785708 intergenic not near genes chr2R 20788104 intergenic CG43666 - chr2R_7_20785001 chr2R_20785001 RAL-358 446 chr2R 20812248 20812273 chr2R 20812328 20812353 8 80 2.0 7.5 4.8 1.4 105 chr2R 20812248 intergenic not near genes chr2R 20812300 intergenic not near genes chr2R 20812353 intergenic not near genes chr2R_8_20810001 chr2R_20810001 RAL-358 447 chr2R 21370865 21370873 chr2R 21371031 21371039 5 166 2.0 2.5 2.2 1.6 174 chr2R 21370865 intron cv-2 - chr2R 21370952 intron cv-2 - chr2R 21371039 intron cv-2 - chr2R_5_21370001 chr2R_21370001 RAL-358 448 chr2R 21421342 21421344 chr2R 21421421 21421423 4 79 6.0 4.5 5.2 0.6 81 chr2R 21421342 intron Sdc - chr2R 21421382 intron Sdc - chr2R 21421423 intron Sdc - chr2R_4_21420001 chr2R_21420001 RAL-358 449 chr2R 21700166 21700179 chr2R 21700252 21700265 5 85 0.0 3.0 1.5 2.0 99 chr2R 21700166 intron HmgZ - chr2R 21700216 intron HmgZ - chr2R 21700265 intron HmgZ - chr2R_5_21700001 chr2R_21700001 RAL-358 450 chr2R 21753082 21753096 chr2R 21753567 21753578 roo 5 484 3.0 1.5 2.2 1.6 496 chr2R 21753082 intergenic not near genes chr2R 21753330 intergenic not near genes chr2R 21753578 intergenic not near genes chr2R_5_21750001 chr2R_21750001 RAL-358 451 chr2R 21759559 21759585 chr2R 21759646 21759672 5 87 5.5 2.0 3.8 1.0 113 chr2R 21759559 intergenic not near genes chr2R 21759616 intergenic not near genes chr2R 21759672 intergenic not near genes chr2R_5_21755001 chr2R_21755001 RAL-358 452 chr2R 21809522 21809548 chr2R 21817762 21817788 roo 11 8240 0.5 0.5 0.5 7.3 8266 chr2R 21809522 intergenic not near genes chr2R 21813655 intergenic not near genes chr2R 21817788 intergenic not near genes chr2R_11_21810001 chr2R_21810001 RAL-358 453 chr2R 21886130 21886155 chr2R 21886209 21886234 5 79 9.5 9.5 9.5 0.5 104 chr2R 21886130 intron Fili + chr2R 21886182 intron Fili + chr2R 21886234 intron Fili + chr2R_5_21885001 chr2R_21885001 RAL-358 454 chr2R 21932253 21932281 chr2R 21932331 21932359 5 78 0.0 1.0 0.5 3.3 106 chr2R 21932253 intron Fili + chr2R 21932306 intron Fili + chr2R 21932359 intron Fili + chr2R_5_21930001 chr2R_21930001 RAL-358 455 chr2R 21992426 21992426 chr2R 21992503 21992503 4 77 8.5 8.5 8.5 0.4 77 chr2R 21992426 intron CG34370 - chr2R 21992464 intron CG34370 - chr2R 21992503 intron CG34370 - chr2R_4_21990001 chr2R_21990001 RAL-358 456 chr2R 22014209 22014227 chr2R 22014284 22014302 5 76 6.5 6.0 6.2 0.7 93 chr2R 22014209 intron CG34370 - chr2R 22014256 intron CG34370 - chr2R 22014302 intron CG34370 - chr2R_5_22010001 chr2R_22010001 RAL-358 457 chr2R 22177441 22177465 chr2R 22179613 22179636 6 2171 12.5 21.5 17.0 0.3 2195 chr2R 22177441 exon CG11170 - chr2R 22178538 intron CG11170 - chr2R 22179636 intron CG11170 - chr2R_6_22175001 chr2R_22175001 RAL-358 458 chr2R 22189450 22189471 chr2R 22189577 22189598 4 127 4.0 4.0 4.0 0.8 148 chr2R 22189450 3` UTR Vps35 + chr2R 22189524 3` UTR Vps35 + chr2R 22189598 3` UTR Vps35 + chr2R_4_22185001 chr2R_22185001 RAL-358 459 chr2R 22349709 22349722 chr2R 22351492 22351506 jockey 4 1784 3.0 4.5 3.8 0.8 1797 chr2R 22349709 intron Liprin-gamma - chr2R 22350608 intron Liprin-gamma - chr2R 22351506 intron Liprin-gamma - chr2R_4_22350001 chr2R_22350001 RAL-358 460 chr2R 22465321 22465343 chr2R 22465520 22465542 BS 5 199 2.0 1.5 1.8 1.8 221 chr2R 22465321 intron CG10384 + chr2R 22465432 intron CG10384 + chr2R 22465542 intron CG10384 + chr2R_5_22465001 chr2R_22465001 RAL-358 461 chr2R 22499853 22499878 chr2R 22499929 22499954 5 76 0.0 3.5 1.8 1.8 101 chr2R 22499853 intron px - chr2R 22499904 intron px - chr2R 22499954 intron px - chr2R_5_22495001 chr2R_22495001 RAL-358 462 chr2R 22503875 22503892 chr2R 22503970 22503986 4 95 0.0 0.5 0.2 3.3 111 chr2R 22503875 intron px - chr2R 22503930 intron px - chr2R 22503986 intron px - chr2R_4_22500001 chr2R_22500001 RAL-358 463 chr2R 22575660 22575689 chr2R 22575739 22575768 5 79 2.5 2.5 2.5 1.4 108 chr2R 22575660 intron dnr1 - chr2R 22575714 intron dnr1 - chr2R 22575768 intron dnr1 - chr2R_5_22575001 chr2R_22575001 RAL-358 464 chr2R 22623456 22623486 chr2R 22623596 22623626 6 140 4.0 0.0 2.0 2.0 170 chr2R 22623456 intron CG33143 + chr2R 22623541 intron CG33143 + chr2R 22623626 intron CG33143 + chr2R_6_22620001 chr2R_22620001 RAL-358 465 chr2R 22839654 22839672 chr2R 22839748 22839768 5 96 0.0 1.0 0.5 3.3 114 chr2R 22839654 intergenic CG9825 + chr2R 22839711 intergenic CG9825 + chr2R 22839768 intergenic CG9825 + chr2R_5_22835001 chr2R_22835001 RAL-358 466 chr2R 22953769 22953787 chr2R 22954112 22954130 5 343 4.0 0.0 2.0 1.7 361 chr2R 22953769 3` UTR CR32835 - chr2R 22953950 intergenic CR32835 - chr2R 22954130 intergenic CR32835 - chr2R_5_22950001 chr2R_22950001 RAL-358 467 chr2R 22988311 22988323 chr2R 22988392 22988404 4 81 3.0 1.0 2.0 1.3 93 chr2R 22988311 intron twi + chr2R 22988358 intron twi + chr2R 22988404 intron twi + chr2R_4_22985001 chr2R_22985001 RAL-358 468 chr2R 23052650 23052688 chr2R 23052726 23052764 9 76 0.5 0.0 0.2 7.5 114 chr2R 23052650 intergenic not near genes chr2R 23052707 intergenic not near genes chr2R 23052764 intergenic not near genes chr2R_9_23050001 chr2R_23050001 RAL-358 469 chr2R 23061779 23061791 chr2R 23061872 23061885 4 94 1.0 1.5 1.2 1.8 106 chr2R 23061779 3` UTR l(2)06496 - chr2R 23061832 3` UTR l(2)06496 - chr2R 23061885 3` UTR l(2)06496 - chr2R_4_23060001 chr2R_23060001 RAL-358 470 chr2R 23186100 23186119 chr2R 23186245 23186264 4 145 0.0 0.5 0.2 3.3 164 chr2R 23186100 intron CG34371 - chr2R 23186182 intron CG34371 - chr2R 23186264 intron CG34371 - chr2R_4_23185001 chr2R_23185001 RAL-358 471 chr2R 23236979 23236992 chr2R 23237071 23237082 7 91 0.0 2.5 1.2 3.2 103 chr2R 23236979 intergenic not near genes chr2R 23237030 intergenic not near genes chr2R 23237082 intergenic not near genes chr2R_7_23235001 chr2R_23235001 RAL-358 472 chr2R 23402630 23402631 chr2R 23407706 23407707 flea 4 5076 1.0 2.5 1.8 1.4 5077 chr2R 23402630 intergenic CG3520 - chr2R 23405168 intergenic not near genes chr2R 23407707 intergenic not near genes chr2R_4_23405001 chr2R_23405001 RAL-358 473 chr2R 23487454 23487470 chr2R 23487536 23487552 9 82 0.5 4.5 2.5 2.6 98 chr2R 23487454 intron CG43795 + chr2R 23487503 intron CG43795 + chr2R 23487552 intron CG43795 + chr2R_9_23485001 chr2R_23485001 RAL-358 474 chr2R 23521407 23521412 chr2R 23521503 23521507 4 96 2.0 2.0 2.0 1.3 100 chr2R 23521407 intron RabX1 - chr2R 23521457 intron RabX1 - chr2R 23521507 intron RabX1 - chr2R_4_23520001 chr2R_23520001 RAL-358 475 chr2R 23607045 23607193 chr2R 23607126 23607286 16 84 3.0 3.0 3.0 4.0 241 chr2R 23607045 intron CG17664 - chr2R 23607166 intron CG17664 - chr2R 23607286 intron CG17664 - chr2R_16_23605001 chr2R_23605001 RAL-358 476 chr2R 23628929 23628957 chr2R 23629005 23629033 7 75 0.0 0.5 0.2 5.8 104 chr2R 23628929 intergenic not near genes chr2R 23628981 intergenic not near genes chr2R 23629033 intergenic not near genes chr2R_7_23625001 chr2R_23625001 RAL-358 477 chr2R 23663379 23663404 chr2R 23663455 23663480 5 76 1.5 0.0 0.8 2.8 101 chr2R 23663379 intron Pde8 + chr2R 23663430 intron Pde8 + chr2R 23663480 intron Pde8 + chr2R_5_23660001 chr2R_23660001 RAL-358 478 chr2R 23745407 23745433 chr2R 23745483 23745509 14 76 0.5 0.5 0.5 9.3 102 chr2R 23745407 intron egl - chr2R 23745458 intron egl - chr2R 23745509 intron egl - chr2R_14_23745001 chr2R_23745001 RAL-358 479 chr2R 23758331 23758339 chr2R 23758407 23758414 9 76 3.5 1.0 2.2 2.8 83 chr2R 23758331 intron CG9850 - chr2R 23758372 intron CG9850 - chr2R 23758414 intron CG9850 - chr2R_9_23755001 chr2R_23755001 RAL-358 480 chr2R 23784472 23784507 chr2R 23784549 23784585 4 78 1.0 0.0 0.5 2.7 113 chr2R 23784472 intron CG9850 - chr2R 23784528 intron CG9850 - chr2R 23784585 intron CG9850 - chr2R_4_23780001 chr2R_23780001 RAL-358 481 chr2R 23986515 23986543 chr2R 23986595 23986622 7 80 0.5 1.5 1.0 3.5 107 chr2R 23986515 intron Phm - chr2R 23986568 intron Phm - chr2R 23986622 intron,5` UTR Phm -,CG30178 + chr2R_7_23985001 chr2R_23985001 RAL-358 482 chr2R 24031383 24031406 chr2R 24031467 24031490 7 84 7.0 1.0 4.0 1.4 107 chr2R 24031383 5` UTR CG30172 - chr2R 24031436 intergenic CG30172 -,Chi - chr2R 24031490 intergenic Chi -,CG30172 - chr2R_7_24030001 chr2R_24030001 RAL-358 483 chr2R 24147068 24147092 chr2R 24154646 24154670 412 4 7578 2.5 3.0 2.8 1.1 7602 chr2R 24147068 intron Dat + chr2R 24150869 intron Dat + chr2R 24154670 intron Dat + chr2R_4_24150001 chr2R_24150001 RAL-358 484 chr2R 24278323 24278337 chr2R 24278406 24278421 4 84 1.0 1.5 1.2 1.8 98 chr2R 24278323 intron nvy + chr2R 24278372 intron nvy + chr2R 24278421 intron nvy + chr2R_4_24275001 chr2R_24275001 RAL-358 485 chr2R 24351416 24351435 chr2R 24351497 24351515 6 80 5.0 1.0 3.0 1.5 99 chr2R 24351416 intron bs + chr2R 24351466 intron bs + chr2R 24351515 intron,3` UTR bs +,CR44811 - chr2R_6_24350001 chr2R_24350001 RAL-358 486 chr2R 24353428 24353450 chr2R 24361788 24361811 roo 5 8361 0.5 1.0 0.8 2.8 8383 chr2R 24353428 intron,intron bs +,CR44811 - chr2R 24357620 intron,intron bs +,CR44811 - chr2R 24361811 intron,intron bs +,CR44811 - chr2R_5_24355001 chr2R_24355001 RAL-358 487 chr2R 24509324 24509335 chr2R 24509409 24509420 4 85 0.5 3.5 2.0 1.3 96 chr2R 24509324 intergenic Letm1 - chr2R 24509372 intergenic Letm1 - chr2R 24509420 intergenic Letm1 - chr2R_4_24505001 chr2R_24505001 RAL-358 488 chr2R 24542320 24542356 chr2R 24542574 24542610 6 254 3.5 5.0 4.2 1.2 290 chr2R 24542320 intron,intron CG4622 -,ITP + chr2R 24542465 intron,intron CG4622 -,ITP + chr2R 24542610 intron,intron CG4622 -,ITP + chr2R_6_24540001 chr2R_24540001 RAL-358 489 chr2R 24590116 24590127 chr2R 24590208 24590219 6 92 4.0 1.5 2.8 1.6 103 chr2R 24590116 intron pio + chr2R 24590168 intron pio + chr2R 24590219 intron pio + chr2R_6_24590001 chr2R_24590001 RAL-358 490 chr2R 24647593 24647607 chr2R 24655150 24655164 412 6 7556 2.0 1.0 1.5 2.4 7571 chr2R 24647593 intergenic not near genes chr2R 24651378 intergenic not near genes chr2R 24655164 intergenic not near genes chr2R_6_24650001 chr2R_24650001 RAL-358 491 chr2R 24727885 24727898 chr2R 24735393 24735406 mdg1 5 7508 2.0 5.5 3.8 1.0 7521 chr2R 24727885 intron Mid1 - chr2R 24731646 intron Mid1 - chr2R 24735406 intron Mid1 - chr2R_5_24730001 chr2R_24730001 RAL-358 492 chr2R 24763615 24763640 chr2R 24765591 24765616 G2 4 1975 0.5 3.5 2.0 1.3 2001 chr2R 24763615 exon CG3894 + chr2R 24764616 intron CG3894 + chr2R 24765616 exon CG3894 + chr2R_4_24760001 chr2R_24760001 RAL-358 493 chr2R 24884056 24884070 chr2R 24884138 24884152 10 82 5.0 0.5 2.8 2.6 96 chr2R 24884056 intron NKAIN + chr2R 24884104 intron NKAIN + chr2R 24884152 intron NKAIN + chr2R_10_24880001 chr2R_24880001 RAL-358 494 chr2R 25014561 25014576 chr2R 25014637 25014652 5 75 0.5 2.5 1.5 2.0 91 chr2R 25014561 intron uzip + chr2R 25014606 intron uzip + chr2R 25014652 intron uzip + chr2R_5_25010001 chr2R_25010001 RAL-358 495 chr2R 25022641 25022666 chr2R 25022724 25022750 5 84 3.0 3.0 3.0 1.2 109 chr2R 25022641 intron uzip + chr2R 25022696 intron uzip + chr2R 25022750 intron uzip + chr2R_5_25020001 chr2R_25020001 RAL-358 496 chr2R 25052039 25052049 chr2R 25052123 25052133 4 84 1.5 3.5 2.5 1.1 94 chr2R 25052039 5` UTR gsb-n - chr2R 25052086 5` UTR gsb-n - chr2R 25052133 5` UTR gsb-n - chr2R_4_25050001 chr2R_25050001 RAL-358 497 chr2R 25057574 25057588 chr2R 25057894 25057908 5 320 2.0 2.5 2.2 1.6 334 chr2R 25057574 intergenic not near genes chr2R 25057741 intergenic not near genes chr2R 25057908 intergenic not near genes chr2R_5_25055001 chr2R_25055001 RAL-358 498 chr2R 25081607 25081639 chr2R 25082703 25082735 8 1096 0.5 2.0 1.2 3.6 1128 chr2R 25081607 intron gol - chr2R 25082171 intron gol - chr2R 25082735 intron gol - chr2R_8_25080001 chr2R_25080001 RAL-358 499 chr2R 25101282 25101309 chr2R 25101384 25101411 11 102 2.0 1.0 1.5 4.4 129 chr2R 25101282 intron lov - chr2R 25101346 intron lov - chr2R 25101411 intron lov - chr2R_11_25100001 chr2R_25100001 RAL-358 500 chr2R 25104793 25104803 chr2R 25104918 25104927 6 124 4.0 3.0 3.5 1.3 134 chr2R 25104793 intron lov - chr2R 25104860 intron lov - chr2R 25104927 intron lov - chr2R_6_25100001 chr2R_25100001 RAL-358 501 chr2R 25141648 25141684 chr2R 25159338 25159374 roo 5 17690 0.0 0.5 0.2 4.2 17726 chr2R 25141648 intergenic not near genes chr2R 25150511 intergenic not near genes chr2R 25159374 intergenic not near genes chr2R_5_25150001 chr2R_25150001 RAL-358 502 chr2R 25167686 25167688 chr2R 25167768 25167770 6 82 0.5 0.5 0.5 4.0 84 chr2R 25167686 5` UTR CG34038 + chr2R 25167728 5` UTR CG34038 + chr2R 25167770 5` UTR CG34038 + chr2R_6_25165001 chr2R_25165001 RAL-358 503 chr3L 110221 110244 chr3L 119388 119411 roo 4 9167 0.5 1.5 1.0 2.0 9190 chr3L 110221 intergenic not near genes chr3L 114816 intergenic not near genes chr3L 119411 intergenic not near genes chr3L_4_110001 chr3L_110001 RAL-358 504 chr3L 160247 160259 chr3L 160349 160359 5 102 2.5 5.0 3.8 1.0 112 chr3L 160247 intron p130CAS + chr3L 160303 intron p130CAS + chr3L 160359 intron p130CAS + chr3L_5_160001 chr3L_160001 RAL-358 505 chr3L 390964 390979 chr3L 391070 391085 4 106 1.5 1.0 1.2 1.8 121 chr3L 390964 intron trh - chr3L 391024 intron trh - chr3L 391085 intron trh - chr3L_4_390001 chr3L_390001 RAL-358 506 chr3L 705899 705922 chr3L 705995 706018 6 96 2.5 1.0 1.8 2.1 119 chr3L 705899 intergenic CG13895 -,CR44514 + chr3L 705958 3` UTR CG13895 - chr3L 706018 3` UTR CG13895 - chr3L_6_705001 chr3L_705001 RAL-358 507 chr3L 789916 789935 chr3L 790401 790420 roo 5 485 0.5 1.5 1.0 2.5 504 chr3L 789916 intergenic not near genes chr3L 790168 intergenic not near genes chr3L 790420 intergenic not near genes chr3L_5_790001 chr3L_790001 RAL-358 508 chr3L 814646 814678 chr3L 814722 814754 11 76 3.5 1.0 2.2 3.4 108 chr3L 814646 intergenic CR44537 + chr3L 814700 intergenic CR44537 + chr3L 814754 intergenic CR44537 + chr3L_11_810001 chr3L_810001 RAL-358 509 chr3L 858022 858030 chr3L 866501 866511 Tirant 4 8480 1.0 0.0 0.5 2.7 8489 chr3L 858022 intergenic not near genes chr3L 862266 intergenic not near genes chr3L 866511 5` UTR CG12502 + chr3L_4_860001 chr3L_860001 RAL-358 510 chr3L 925185 925208 chr3L 932611 932634 mdg1 7 7426 0.5 3.0 1.8 2.5 7449 chr3L 925185 intron Glut1 + chr3L 928910 intron Glut1 + chr3L 932634 intron Glut1 + chr3L_7_925001 chr3L_925001 RAL-358 511 chr3L 933917 933940 chr3L 934020 934043 7 103 1.0 1.5 1.2 3.2 126 chr3L 933917 intron Glut1 + chr3L 933980 intron Glut1 + chr3L 934043 intron Glut1 + chr3L_7_930001 chr3L_930001 RAL-358 512 chr3L 939775 939791 chr3L 940896 940911 jockey 5 1121 3.5 3.5 3.5 1.1 1136 chr3L 939775 intron Glut1 + chr3L 940343 intron Glut1 + chr3L 940911 intron Glut1 + chr3L_5_940001 chr3L_940001 RAL-358 513 chr3L 947742 947749 chr3L 947827 947834 4 85 1.5 0.0 0.8 2.2 92 chr3L 947742 intron Glut1 + chr3L 947788 intron Glut1 + chr3L 947834 intron Glut1 + chr3L_4_945001 chr3L_945001 RAL-358 514 chr3L 1016429 1016445 chr3L 1017474 1017490 7 1045 3.5 0.0 1.8 2.5 1061 chr3L 1016429 intron trio - chr3L 1016960 intron trio - chr3L 1017490 intron trio - chr3L_7_1015001 chr3L_1015001 RAL-358 515 chr3L 1021380 1021400 chr3L 1021457 1021480 6 80 1.5 0.0 0.8 3.3 100 chr3L 1021380 intron trio - chr3L 1021430 intron trio - chr3L 1021480 intron trio - chr3L_6_1020001 chr3L_1020001 RAL-358 516 chr3L 1028815 1028841 chr3L 1028901 1028927 7 86 3.0 0.0 1.5 2.8 112 chr3L 1028815 intron trio - chr3L 1028871 intron trio - chr3L 1028927 intron trio - chr3L_7_1025001 chr3L_1025001 RAL-358 517 chr3L 1031587 1031604 chr3L 1031662 1031679 6 75 2.0 0.5 1.2 2.7 92 chr3L 1031587 intron trio - chr3L 1031633 intron trio - chr3L 1031679 intron trio - chr3L_6_1030001 chr3L_1030001 RAL-358 518 chr3L 1040555 1040578 chr3L 1040639 1040662 4 84 1.5 0.5 1.0 2.0 107 chr3L 1040555 intron bab1 - chr3L 1040608 intron bab1 - chr3L 1040662 intron bab1 - chr3L_4_1040001 chr3L_1040001 RAL-358 519 chr3L 1108685 1108707 chr3L 1108870 1108885 6 183 1.0 4.5 2.8 1.6 200 chr3L 1108685 intergenic not near genes chr3L 1108785 intergenic not near genes chr3L 1108885 intergenic not near genes chr3L_6_1105001 chr3L_1105001 RAL-358 520 chr3L 1154135 1154159 chr3L 1163285 1163309 roo 6 9150 3.0 2.5 2.8 1.6 9174 chr3L 1154135 intron bab2 - chr3L 1158722 intron bab2 - chr3L 1163309 intron bab2 - chr3L_6_1155001 chr3L_1155001 RAL-358 521 chr3L 1219595 1219622 chr3L 1227328 1227355 412 7 7733 1.0 2.5 1.8 2.5 7760 chr3L 1219595 intron mwh + chr3L 1223475 intron mwh + chr3L 1227355 intron mwh + chr3L_7_1220001 chr3L_1220001 RAL-358 522 chr3L 1265091 1265373 chr3L 1265174 1265473 9 90 4.0 2.5 3.2 2.1 382 chr3L 1265091 intron CG9134 + chr3L 1265282 intron CG9134 + chr3L 1265473 intron CG9134 + chr3L_9_1265001 chr3L_1265001 RAL-358 523 chr3L 1347159 1347171 chr3L 1347244 1347256 4 84 2.5 4.0 3.2 1.0 97 chr3L 1347159 intron Ptp61F - chr3L 1347208 intron Ptp61F - chr3L 1347256 intron Ptp61F - chr3L_4_1345001 chr3L_1345001 RAL-358 524 chr3L 1359314 1359325 chr3L 1359394 1359405 7 80 1.0 4.0 2.5 2.0 91 chr3L 1359314 intron Ptp61F - chr3L 1359360 intron Ptp61F - chr3L 1359405 intron Ptp61F - chr3L_7_1355001 chr3L_1355001 RAL-358 525 chr3L 1364049 1364052 chr3L 1364135 1364138 4 86 0.0 2.5 1.2 1.8 89 chr3L 1364049 intron Ptp61F - chr3L 1364094 intron Ptp61F - chr3L 1364138 intron Ptp61F - chr3L_4_1360001 chr3L_1360001 RAL-358 526 chr3L 1406198 1406218 chr3L 1406307 1406328 5 110 1.0 0.0 0.5 3.3 130 chr3L 1406198 intron Ptp61F - chr3L 1406263 intron Ptp61F - chr3L 1406328 intron Ptp61F - chr3L_5_1405001 chr3L_1405001 RAL-358 527 chr3L 1506012 1506023 chr3L 1513608 1513620 17.6 4 7596 4.0 1.5 2.8 1.1 7608 chr3L 1506012 intron,intron Psa +,cue - chr3L 1509816 intron,intron Psa +,cue - chr3L 1513620 intron,intron Psa +,cue - chr3L_4_1505001 chr3L_1505001 RAL-358 528 chr3L 1639235 1639240 chr3L 1639415 1639421 4 180 1.0 1.5 1.2 1.8 186 chr3L 1639235 5` UTR metl - chr3L 1639328 intergenic metl -,Bgb + chr3L 1639421 intergenic metl -,Bgb + chr3L_4_1635001 chr3L_1635001 RAL-358 529 chr3L 1936921 1936944 chr3L 1937912 1937932 6 990 10.5 7.5 9.0 0.6 1011 chr3L 1936921 intron CG5687 - chr3L 1937426 intron CG5687 - chr3L 1937932 intron CG5687 - chr3L_6_1935001 chr3L_1935001 RAL-358 530 chr3L 2139207 2139223 chr3L 2139288 2139303 7 81 1.5 2.5 2.0 2.3 96 chr3L 2139207 intron zormin - chr3L 2139255 intron zormin - chr3L 2139303 intron zormin - chr3L_7_2135001 chr3L_2135001 RAL-358 531 chr3L 2168778 2168801 chr3L 2168869 2168892 4 90 3.5 2.0 2.8 1.1 114 chr3L 2168778 exon CG15879 - chr3L 2168835 intron CG15879 - chr3L 2168892 intron CG15879 - chr3L_4_2165001 chr3L_2165001 RAL-358 532 chr3L 2187624 2187641 chr3L 2187707 2187724 4 83 0.5 2.5 1.5 1.6 100 chr3L 2187624 exon CG13810 + chr3L 2187674 3` UTR CG13810 + chr3L 2187724 intergenic CG13810 + chr3L_4_2185001 chr3L_2185001 RAL-358 533 chr3L 2290246 2290275 chr3L 2290327 2290356 7 81 0.0 0.0 0.0 7.0 110 chr3L 2290246 intron MsR2 + chr3L 2290301 intron MsR2 + chr3L 2290356 intron MsR2 + chr3L_7_2290001 chr3L_2290001 RAL-358 534 chr3L 2331588 2331615 chr3L 2331665 2331692 4 77 0.5 1.5 1.0 2.0 104 chr3L 2331588 intron MsR1 + chr3L 2331640 intron MsR1 + chr3L 2331692 intron MsR1 + chr3L_4_2330001 chr3L_2330001 RAL-358 535 chr3L 2447505 2447531 chr3L 2456661 2456687 roo 6 9156 1.0 0.5 0.8 3.3 9182 chr3L 2447505 intron CG45186 + chr3L 2452096 intron CG45186 + chr3L 2456687 intron CG45186 + chr3L_6_2450001 chr3L_2450001 RAL-358 536 chr3L 2533648 2533677 chr3L 2533730 2533759 8 82 6.5 0.0 3.2 1.9 111 chr3L 2533648 intron Spn - chr3L 2533704 intron Spn - chr3L 2533759 intron Spn - chr3L_8_2530001 chr3L_2530001 RAL-358 537 chr3L 2561527 2561555 chr3L 2561604 2561632 4 77 1.5 3.5 2.5 1.1 105 chr3L 2561527 intron msn - chr3L 2561580 intron msn - chr3L 2561632 intron msn - chr3L_4_2560001 chr3L_2560001 RAL-358 538 chr3L 2568183 2568210 chr3L 2568264 2568289 10 81 1.5 0.5 1.0 5.0 106 chr3L 2568183 intron msn - chr3L 2568236 intron msn - chr3L 2568289 intron msn - chr3L_10_2565001 chr3L_2565001 RAL-358 539 chr3L 2591905 2591921 chr3L 2592003 2592017 10 99 2.0 1.0 1.5 4.0 112 chr3L 2591905 intron dos + chr3L 2591961 intron dos + chr3L 2592017 intron dos + chr3L_10_2590001 chr3L_2590001 RAL-358 540 chr3L 2634444 2634478 chr3L 2634886 2634920 6 442 1.0 2.5 1.8 2.1 476 chr3L 2634444 intron,intron CG42245 +,MEP-1 + chr3L 2634682 intron,intron CG42245 +,MEP-1 + chr3L 2634920 intron,intron CG42245 +,MEP-1 + chr3L_6_2630001 chr3L_2630001 RAL-358 541 chr3L 2683943 2683975 chr3L 2684019 2684051 10 76 1.0 0.5 0.8 5.6 108 chr3L 2683943 intron Fife - chr3L 2683997 intron Fife - chr3L 2684051 intron Fife - chr3L_10_2680001 chr3L_2680001 RAL-358 542 chr3L 2719537 2719555 chr3L 2719639 2719657 4 102 1.5 1.0 1.2 1.8 120 chr3L 2719537 3` UTR Mrtf - chr3L 2719597 3` UTR Mrtf - chr3L 2719657 3` UTR Mrtf - chr3L_4_2715001 chr3L_2715001 RAL-358 543 chr3L 2854485 2854500 chr3L 2854563 2854578 4 78 1.5 2.0 1.8 1.4 93 chr3L 2854485 intron CG43444 - chr3L 2854532 intron CG43444 - chr3L 2854578 intron CG43444 - chr3L_4_2850001 chr3L_2850001 RAL-358 544 chr3L 2927837 2927870 chr3L 2936114 2936147 Tirant 6 8276 1.5 2.0 1.8 2.1 8310 chr3L 2927837 intron Shab + chr3L 2931992 intron Shab + chr3L 2936147 intron Shab + chr3L_6_2930001 chr3L_2930001 RAL-358 545 chr3L 3057252 3057264 chr3L 3057396 3057408 4 144 6.5 2.0 4.2 0.8 156 chr3L 3057252 exon CG32486 - chr3L 3057330 intron CG32486 - chr3L 3057408 intron CG32486 - chr3L_4_3055001 chr3L_3055001 RAL-358 546 chr3L 3061286 3061315 chr3L 3069869 3069897 Tirant 4 8583 3.0 1.5 2.2 1.2 8611 chr3L 3061286 intron CG32486 - chr3L 3065592 intron CG32486 - chr3L 3069897 intron CG32486 - chr3L_4_3065001 chr3L_3065001 RAL-358 547 chr3L 3128194 3128216 chr3L 3128280 3128302 9 86 1.0 1.0 1.0 4.5 108 chr3L 3128194 intergenic prominin-like - chr3L 3128248 intergenic not near genes chr3L 3128302 intergenic not near genes chr3L_9_3125001 chr3L_3125001 RAL-358 548 chr3L 3259620 3259651 chr3L 3259715 3259746 17 95 2.0 2.5 2.2 5.3 126 chr3L 3259620 intron ckd + chr3L 3259683 intron ckd + chr3L 3259746 intron ckd + chr3L_17_3255001 chr3L_3255001 RAL-358 549 chr3L 3281448 3281472 chr3L 3281944 3281968 Doc 5 496 0.0 3.5 1.8 1.8 520 chr3L 3281448 intron CG12017 + chr3L 3281708 intron CG12017 + chr3L 3281968 intron CG12017 + chr3L_5_3280001 chr3L_3280001 RAL-358 550 chr3L 3475090 3475104 chr3L 3475534 3475548 jockey 4 444 2.0 1.0 1.5 1.6 458 chr3L 3475090 intron CG42324 + chr3L 3475319 intron CG42324 + chr3L 3475548 intron CG42324 + chr3L_4_3475001 chr3L_3475001 RAL-358 551 chr3L 3601296 3601330 chr3L 3606607 3606641 copia 7 5311 3.0 1.5 2.2 2.2 5345 chr3L 3601296 intron Eip63E + chr3L 3603968 intron Eip63E + chr3L 3606641 intron Eip63E + chr3L_7_3600001 chr3L_3600001 RAL-358 552 chr3L 3783276 3783280 chr3L 3783353 3783357 4 77 2.0 2.5 2.2 1.2 81 chr3L 3783276 intron CG32264 - chr3L 3783316 intron CG32264 - chr3L 3783357 intron CG32264 - chr3L_4_3780001 chr3L_3780001 RAL-358 553 chr3L 3815057 3815067 chr3L 3815138 3815148 4 80 2.0 1.5 1.8 1.4 91 chr3L 3815057 intron,3` UTR Scsalpha +,CR43932 - chr3L 3815102 intron,3` UTR Scsalpha +,CR43932 - chr3L 3815148 intron,intron Scsalpha +,CR43932 - chr3L_4_3815001 chr3L_3815001 RAL-358 554 chr3L 3981752 3981779 chr3L 3981835 3981862 5 83 1.0 3.0 2.0 1.7 110 chr3L 3981752 intergenic not near genes chr3L 3981807 intergenic not near genes chr3L 3981862 intergenic not near genes chr3L_5_3980001 chr3L_3980001 RAL-358 555 chr3L 4048415 4048441 chr3L 4048507 4048533 7 92 4.5 1.5 3.0 1.8 118 chr3L 4048415 intron CG1136 + chr3L 4048474 intron CG1136 + chr3L 4048533 intron CG1136 + chr3L_7_4045001 chr3L_4045001 RAL-358 556 chr3L 4423475 4423492 chr3L 4423569 4423586 5 94 0.0 0.0 0.0 5.0 111 chr3L 4423475 intron CG15020 + chr3L 4423530 intron CG15020 + chr3L 4423586 intron CG15020 + chr3L_5_4420001 chr3L_4420001 RAL-358 557 chr3L 4613567 4613597 chr3L 4613715 4613743 15 148 2.0 1.5 1.8 5.4 176 chr3L 4613567 intron Src64B - chr3L 4613655 intron Src64B - chr3L 4613743 intron Src64B - chr3L_15_4610001 chr3L_4610001 RAL-358 558 chr3L 4858325 4858334 chr3L 4858415 4858423 5 89 2.5 2.5 2.5 1.4 98 chr3L 4858325 intergenic not near genes chr3L 4858374 intergenic not near genes chr3L 4858423 intergenic not near genes chr3L_5_4855001 chr3L_4855001 RAL-358 559 chr3L 5054943 5054969 chr3L 5055023 5055049 7 79 0.5 7.0 3.8 1.5 106 chr3L 5054943 intron Con - chr3L 5054996 intron Con - chr3L 5055049 intron Con - chr3L_7_5050001 chr3L_5050001 RAL-358 560 chr3L 5104495 5104512 chr3L 5124629 5124646 5 20133 1.0 1.5 1.2 2.3 20151 chr3L 5104495 intergenic not near genes chr3L 5114570 intergenic not near genes chr3L 5124646 intergenic not near genes chr3L_5_5110001 chr3L_5110001 RAL-358 561 chr3L 5164639 5164658 chr3L 5164713 5164734 7 75 0.5 2.5 1.5 2.8 95 chr3L 5164639 intron shep - chr3L 5164686 intron shep - chr3L 5164734 intron shep - chr3L_7_5160001 chr3L_5160001 RAL-358 562 chr3L 5212243 5212257 chr3L 5212326 5212340 7 82 1.0 0.0 0.5 4.7 97 chr3L 5212243 intron shep - chr3L 5212292 intron shep - chr3L 5212340 intron shep - chr3L_7_5210001 chr3L_5210001 RAL-358 563 chr3L 5261169 5261176 chr3L 5261245 5261255 4 78 3.5 1.5 2.5 1.1 86 chr3L 5261169 intron shep - chr3L 5261212 intron shep - chr3L 5261255 intron shep - chr3L_4_5260001 chr3L_5260001 RAL-358 564 chr3L 5388211 5388223 chr3L 5388532 5388546 4 322 0.0 2.0 1.0 2.0 335 chr3L 5388211 intergenic not near genes chr3L 5388378 intergenic not near genes chr3L 5388546 intergenic not near genes chr3L_4_5385001 chr3L_5385001 RAL-358 565 chr3L 5449551 5449559 chr3L 5449630 5449637 4 78 1.0 1.0 1.0 2.0 86 chr3L 5449551 intergenic not near genes chr3L 5449594 intergenic not near genes chr3L 5449637 intergenic not near genes chr3L_4_5445001 chr3L_5445001 RAL-358 566 chr3L 5482952 5483094 chr3L 5483161 5483210 5 136 0.0 1.0 0.5 3.3 258 chr3L 5482952 exon CG4835 + chr3L 5483081 exon CG4835 + chr3L 5483210 exon CG4835 + chr3L_5_5480001 chr3L_5480001 RAL-358 567 chr3L 5490385 5490416 chr3L 5490531 5490558 6 144 0.0 3.5 1.8 2.1 173 chr3L 5490385 intergenic not near genes chr3L 5490472 intergenic not near genes chr3L 5490558 intergenic not near genes chr3L_6_5490001 chr3L_5490001 RAL-358 568 chr3L 5537722 5537755 chr3L 5538063 5538097 jockey 8 342 3.5 3.5 3.5 1.8 375 chr3L 5537722 intergenic not near genes chr3L 5537910 intergenic CG10625 - chr3L 5538097 intergenic CG10625 - chr3L_8_5535001 chr3L_5535001 RAL-358 569 chr3L 5558624 5558650 chr3L 5558738 5558764 7 114 3.0 5.5 4.2 1.3 140 chr3L 5558624 intergenic not near genes chr3L 5558694 intergenic not near genes chr3L 5558764 intergenic not near genes chr3L_7_5555001 chr3L_5555001 RAL-358 570 chr3L 5788714 5788741 chr3L 5788793 5788820 4 79 1.0 1.0 1.0 2.0 106 chr3L 5788714 intergenic not near genes chr3L 5788767 intergenic not near genes chr3L 5788820 intergenic not near genes chr3L_4_5785001 chr3L_5785001 RAL-358 571 chr3L 5926317 5926343 chr3L 5926507 5926532 BS 6 189 4.0 1.5 2.8 1.6 215 chr3L 5926317 intron Vap-33B + chr3L 5926424 intron Vap-33B + chr3L 5926532 intron Vap-33B + chr3L_6_5925001 chr3L_5925001 RAL-358 572 chr3L 6052652 6052660 chr3L 6052737 6052745 6 85 4.0 6.5 5.2 1.0 93 chr3L 6052652 exon Jon65Aii + chr3L 6052698 intron Jon65Aii + chr3L 6052745 exon Jon65Aii + chr3L_6_6050001 chr3L_6050001 RAL-358 573 chr3L 6085530 6085551 chr3L 6085631 6085652 19 101 0.0 2.0 1.0 9.5 122 chr3L 6085530 intron CG13293 + chr3L 6085591 intron CG13293 + chr3L 6085652 intron CG13293 + chr3L_19_6085001 chr3L_6085001 RAL-358 574 chr3L 6220917 6220947 chr3L 6230069 6230099 roo 7 9152 2.0 3.0 2.5 2.0 9182 chr3L 6220917 5` UTR pncr008:3L + chr3L 6225508 intergenic not near genes chr3L 6230099 intergenic not near genes chr3L_7_6225001 chr3L_6225001 RAL-358 575 chr3L 6512261 6512291 chr3L 6512347 6512377 5 86 0.0 0.0 0.0 5.0 116 chr3L 6512261 intron sfl + chr3L 6512319 intron sfl + chr3L 6512377 intron sfl + chr3L_5_6510001 chr3L_6510001 RAL-358 576 chr3L 6562842 6562856 chr3L 6562921 6562935 4 80 1.0 1.0 1.0 2.0 93 chr3L 6562842 intron CG18769 + chr3L 6562888 intron CG18769 + chr3L 6562935 intron CG18769 + chr3L_4_6560001 chr3L_6560001 RAL-358 577 chr3L 6887523 6887547 chr3L 6895015 6895039 roo 5 7492 0.0 0.5 0.2 4.2 7516 chr3L 6887523 intergenic not near genes chr3L 6891281 intergenic not near genes chr3L 6895039 intergenic not near genes chr3L_5_6890001 chr3L_6890001 RAL-358 578 chr3L 6953526 6953543 chr3L 6953762 6953779 5 237 0.5 1.0 0.8 2.8 253 chr3L 6953526 intron CG10077 - chr3L 6953652 intron CG10077 - chr3L 6953779 exon CG10077 - chr3L_5_6950001 chr3L_6950001 RAL-358 579 chr3L 7033064 7033082 chr3L 7033161 7033180 4 98 0.5 1.5 1.0 2.0 116 chr3L 7033064 intron Mp + chr3L 7033122 intron Mp + chr3L 7033180 intron Mp + chr3L_4_7030001 chr3L_7030001 RAL-358 580 chr3L 7112598 7112614 chr3L 7112685 7112701 7 87 0.5 3.5 2.0 2.3 103 chr3L 7112598 intron form3 + chr3L 7112650 intron form3 + chr3L 7112701 intron form3 + chr3L_7_7110001 chr3L_7110001 RAL-358 581 chr3L 7193974 7193993 chr3L 7194054 7194074 5 81 2.5 3.0 2.8 1.3 100 chr3L 7193974 intergenic not near genes chr3L 7194024 intergenic not near genes chr3L 7194074 intergenic not near genes chr3L_5_7190001 chr3L_7190001 RAL-358 582 chr3L 7444021 7444045 chr3L 7444119 7444144 4 98 2.5 0.0 1.2 1.8 123 chr3L 7444021 intron CG42458 + chr3L 7444082 intron CG42458 + chr3L 7444144 intron CG42458 + chr3L_4_7440001 chr3L_7440001 RAL-358 583 chr3L 7561737 7561757 chr3L 7562358 7562378 4 621 10.0 11.5 10.8 0.3 641 chr3L 7561737 intergenic not near genes chr3L 7562058 intergenic not near genes chr3L 7562378 intergenic frac + chr3L_4_7560001 chr3L_7560001 RAL-358 584 chr3L 7560967 7561000 chr3L 7563241 7563274 5 2274 14.5 11.5 13.0 0.4 2307 chr3L 7560967 intergenic not near genes chr3L 7562120 intergenic frac + chr3L 7563274 intron frac + chr3L_5_7560001 chr3L_7560001 RAL-358 585 chr3L 7572076 7572081 chr3L 7572168 7572173 4 92 2.5 2.5 2.5 1.1 97 chr3L 7572076 intergenic not near genes chr3L 7572124 intergenic not near genes chr3L 7572173 intergenic not near genes chr3L_4_7570001 chr3L_7570001 RAL-358 586 chr3L 7591162 7591181 chr3L 7591250 7591271 5 90 0.5 2.0 1.2 2.3 109 chr3L 7591162 intergenic CG7716 - chr3L 7591216 intergenic CG7716 - chr3L 7591271 intergenic CG7716 - chr3L_5_7590001 chr3L_7590001 RAL-358 587 chr3L 7691846 7691865 chr3L 7691938 7691957 5 92 3.0 2.0 2.5 1.4 111 chr3L 7691846 intron,intron,intron CG32373 +,Ank2 -,CG44195 - chr3L 7691902 intron,intron,intron CG32373 +,Ank2 -,CG44195 - chr3L 7691957 intron,intron,intron CG32373 +,Ank2 -,CG44195 - chr3L_5_7690001 chr3L_7690001 RAL-358 588 chr3L 7749470 7749471 chr3L 11777678 11777678 6 4028208 4.5 4.0 4.2 1.2 4028208 chr3L 7749470 intron,3` UTR CG32373 +,CG13685 + chr3L 9763574 5` UTR CG8177 + chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_6_9760001 chr3L_9760001 RAL-358 589 chr3L 7793711 7793725 chr3L 7800763 7800776 297 5 7052 3.5 0.0 1.8 1.8 7065 chr3L 7793711 intron CG32369 - chr3L 7797244 intron CG32369 - chr3L 7800776 intron CG32369 - chr3L_5_7795001 chr3L_7795001 RAL-358 590 chr3L 7829551 7829583 chr3L 7829634 7829666 7 83 1.0 0.0 0.5 4.7 115 chr3L 7829551 intron Pdp1 - chr3L 7829608 intron Pdp1 - chr3L 7829666 intron Pdp1 - chr3L_7_7825001 chr3L_7825001 RAL-358 591 chr3L 7886515 7886541 chr3L 7889033 7889059 Stalker4 4 2518 0.0 1.5 0.8 2.2 2544 chr3L 7886515 intron CG32365 + chr3L 7887787 intron CG32365 + chr3L 7889059 intron CG32365 + chr3L_4_7885001 chr3L_7885001 RAL-358 592 chr3L 7985364 7985389 chr3L 7987692 7987717 NOF 5 2328 0.5 1.0 0.8 2.8 2353 chr3L 7985364 intron nmo + chr3L 7986540 intron nmo + chr3L 7987717 intron nmo + chr3L_5_7985001 chr3L_7985001 RAL-358 593 chr3L 8087778 8087798 chr3L 8087917 8087937 5 139 2.5 0.5 1.5 2.0 159 chr3L 8087778 intron,3` UTR Ect4 +,CG7565 - chr3L 8087858 intron,3` UTR Ect4 +,CG7565 - chr3L 8087937 intron,3` UTR Ect4 +,CG7565 - chr3L_5_8085001 chr3L_8085001 RAL-358 594 chr3L 8295792 8295808 chr3L 8295950 8295966 4 158 0.5 2.0 1.2 1.8 174 chr3L 8295792 intergenic CG7201 - chr3L 8295879 intergenic not near genes chr3L 8295966 intergenic not near genes chr3L_4_8295001 chr3L_8295001 RAL-358 595 chr3L 8362108 8362131 chr3L 8362191 8362215 5 82 1.5 1.5 1.5 2.0 107 chr3L 8362108 intergenic not near genes chr3L 8362162 intergenic not near genes chr3L 8362215 intergenic not near genes chr3L_5_8360001 chr3L_8360001 RAL-358 596 chr3L 8481782 8481803 chr3L 8490941 8490960 roo 5 9159 0.5 2.0 1.2 2.3 9178 chr3L 8481782 intron CG43163 - chr3L 8486371 intron CG43163 - chr3L 8490960 intron CG43163 - chr3L_5_8485001 chr3L_8485001 RAL-358 597 chr3L 8615032 8615059 chr3L 8615111 8615138 5 79 2.5 3.0 2.8 1.3 106 chr3L 8615032 exon CG6282 + chr3L 8615085 intron CG6282 + chr3L 8615138 intron CG6282 + chr3L_5_8615001 chr3L_8615001 RAL-358 598 chr3L 8791271 8791288 chr3L 8796691 8796708 I-element 7 5420 3.0 2.0 2.5 2.0 5437 chr3L 8791271 exon Fhos + chr3L 8793990 intron Fhos + chr3L 8796708 intron Fhos + chr3L_7_8790001 chr3L_8790001 RAL-358 599 chr3L 8980993 8981017 chr3L 8981073 8981097 9 80 0.5 1.5 1.0 4.5 104 chr3L 8980993 intergenic not near genes chr3L 8981045 intergenic not near genes chr3L 8981097 intergenic not near genes chr3L_9_8980001 chr3L_8980001 RAL-358 600 chr3L 9011130 9011154 chr3L 9011217 9011240 4 87 1.0 1.0 1.0 2.0 110 chr3L 9011130 intergenic not near genes chr3L 9011185 intergenic not near genes chr3L 9011240 intergenic not near genes chr3L_4_9010001 chr3L_9010001 RAL-358 601 chr3L 9013691 9013691 chr3L 18417066 18417066 6 9403375 11.0 11.0 11.0 0.5 9403375 chr3L 9013691 intron Doc2 - chr3L 13715378 intron bru-3 - chr3L 18417066 intergenic not near genes chr3L_6_13715001 chr3L_13715001 RAL-358 602 chr3L 9076932 9076956 chr3L 9084492 9084516 412 7 7560 2.0 1.0 1.5 2.8 7584 chr3L 9076932 exon Tequila + chr3L 9080724 intron Tequila + chr3L 9084516 exon Tequila + chr3L_7_9080001 chr3L_9080001 RAL-358 603 chr3L 9130557 9130579 chr3L 9134318 9134340 412 5 3761 2.0 1.5 1.8 1.8 3783 chr3L 9130557 intergenic bol - chr3L 9132448 intergenic not near genes chr3L 9134340 intergenic Dhpr + chr3L_5_9130001 chr3L_9130001 RAL-358 604 chr3L 9164696 9164731 chr3L 9166162 9166198 hobo 9 1467 2.0 2.0 2.0 3.0 1502 chr3L 9164696 intron Rdl - chr3L 9165447 intron Rdl - chr3L 9166198 intron Rdl - chr3L_9_9165001 chr3L_9165001 RAL-358 605 chr3L 9219243 9219266 chr3L 9219915 9219938 jockey 6 671 1.5 1.5 1.5 2.4 695 chr3L 9219243 intergenic not near genes chr3L 9219590 intergenic not near genes chr3L 9219938 intergenic not near genes chr3L_6_9215001 chr3L_9215001 RAL-358 606 chr3L 9270624 9270636 chr3L 9278379 9278391 roo 5 7755 0.5 1.5 1.0 2.5 7767 chr3L 9270624 intron GluRIB + chr3L 9274508 intron GluRIB + chr3L 9278391 exon GluRIB + chr3L_5_9270001 chr3L_9270001 RAL-358 607 chr3L 9359592 9359621 chr3L 9359683 9359712 14 91 2.5 1.5 2.0 4.7 120 chr3L 9359592 3` UTR CG32039 + chr3L 9359652 3` UTR CG32039 + chr3L 9359712 3` UTR CG32039 + chr3L_14_9355001 chr3L_9355001 RAL-358 608 chr3L 9492401 9492434 chr3L 9492481 9492510 12 80 1.0 0.0 0.5 8.0 109 chr3L 9492401 intergenic CG32037 - chr3L 9492456 intergenic CG32037 - chr3L 9492510 intergenic CG32037 - chr3L_12_9490001 chr3L_9490001 RAL-358 609 chr3L 9498202 9498233 chr3L 9498279 9498310 4 77 1.0 1.5 1.2 1.8 108 chr3L 9498202 intron path - chr3L 9498256 intron path - chr3L 9498310 intron path - chr3L_4_9495001 chr3L_9495001 RAL-358 610 chr3L 9501721 9501732 chr3L 9502207 9502218 roo 7 486 1.0 6.0 3.5 1.6 497 chr3L 9501721 intron path - chr3L 9501970 intron path - chr3L 9502218 intron path - chr3L_7_9500001 chr3L_9500001 RAL-358 611 chr3L 9571906 9571935 chr3L 9572254 9572283 jockey 4 348 2.5 1.0 1.8 1.4 377 chr3L 9571906 intron CG42673 + chr3L 9572094 intron CG42673 + chr3L 9572283 intron CG42673 + chr3L_4_9570001 chr3L_9570001 RAL-358 612 chr3L 9575910 9575930 chr3L 9580990 9581010 jockey 7 5079 2.0 1.5 1.8 2.5 5100 chr3L 9575910 intron CG42673 + chr3L 9578460 intron CG42673 + chr3L 9581010 intron CG42673 + chr3L_7_9575001 chr3L_9575001 RAL-358 613 chr3L 9637856 9637879 chr3L 9637938 9637961 9 82 1.5 2.5 2.0 3.0 105 chr3L 9637856 intron fry - chr3L 9637908 intron fry - chr3L 9637961 intron fry - chr3L_9_9635001 chr3L_9635001 RAL-358 614 chr3L 9689508 9689541 chr3L 9689588 9689621 7 80 0.5 3.0 1.8 2.5 113 chr3L 9689508 intron CG6767 - chr3L 9689564 intron CG6767 - chr3L 9689621 intron CG6767 - chr3L_7_9685001 chr3L_9685001 RAL-358 615 chr3L 9692385 9692418 chr3L 9692512 9692545 8 127 0.0 0.5 0.2 6.7 160 chr3L 9692385 intron CG6767 - chr3L 9692465 intron CG6767 - chr3L 9692545 intron CG6767 - chr3L_8_9690001 chr3L_9690001 RAL-358 616 chr3L 9697772 9697799 chr3L 9697864 9697891 11 92 1.0 3.5 2.2 3.4 119 chr3L 9697772 intergenic not near genes chr3L 9697832 intergenic not near genes chr3L 9697891 intergenic UbcD4 + chr3L_11_9695001 chr3L_9695001 RAL-358 617 chr3L 9907881 9907891 chr3L 9907957 9907968 4 77 4.0 3.5 3.8 0.8 87 chr3L 9907881 intergenic CG34356 + chr3L 9907924 intergenic CG34356 + chr3L 9907968 intergenic CG34356 + chr3L_4_9905001 chr3L_9905001 RAL-358 618 chr3L 9929676 9929687 chr3L 9938455 9938468 roo 8 8780 0.5 1.0 0.8 4.4 8792 chr3L 9929676 intron CG34356 + chr3L 9934072 intron CG34356 + chr3L 9938468 intron CG34356 + chr3L_8_9930001 chr3L_9930001 RAL-358 619 chr3L 9998282 9998300 chr3L 9998573 9998591 5 291 2.0 0.5 1.2 2.3 309 chr3L 9998282 intron dpr6 + chr3L 9998436 intron dpr6 + chr3L 9998591 intron dpr6 + chr3L_5_9995001 chr3L_9995001 RAL-358 620 chr3L 10003154 10003174 chr3L 10003250 10003271 5 97 1.0 3.5 2.2 1.6 117 chr3L 10003154 intron dpr6 + chr3L 10003212 intron dpr6 + chr3L 10003271 intron dpr6 + chr3L_5_10000001 chr3L_10000001 RAL-358 621 chr3L 10047468 10047498 chr3L 10047595 10047625 8 127 1.5 0.5 1.0 4.0 157 chr3L 10047468 intron dpr6 + chr3L 10047546 intron dpr6 + chr3L 10047625 intron dpr6 + chr3L_8_10045001 chr3L_10045001 RAL-358 622 chr3L 10219239 10219267 chr3L 10219336 10219364 5 97 2.0 2.0 2.0 1.7 125 chr3L 10219239 exon CG32055 - chr3L 10219302 exon CG32055 - chr3L 10219364 exon CG32055 - chr3L_5_10215001 chr3L_10215001 RAL-358 623 chr3L 10248972 10249128 chr3L 10249050 10249205 4 78 0.0 0.0 0.0 4.0 233 chr3L 10248972 intergenic CR44540 - chr3L 10249088 intergenic CR44540 - chr3L 10249205 intergenic not near genes chr3L_4_10245001 chr3L_10245001 RAL-358 624 chr3L 10255376 10255386 chr3L 10255474 10255484 4 97 0.0 0.0 0.0 4.0 108 chr3L 10255376 intergenic not near genes chr3L 10255430 intergenic not near genes chr3L 10255484 intergenic not near genes chr3L_4_10255001 chr3L_10255001 RAL-358 625 chr3L 10298672 10298702 chr3L 10298759 10298789 8 86 0.5 0.5 0.5 5.3 117 chr3L 10298672 intergenic not near genes chr3L 10298730 intergenic not near genes chr3L 10298789 intergenic not near genes chr3L_8_10295001 chr3L_10295001 RAL-358 626 chr3L 10417569 10417606 chr3L 10417646 10417682 9 76 1.0 1.0 1.0 4.5 113 chr3L 10417569 intergenic not near genes chr3L 10417626 intergenic not near genes chr3L 10417682 intergenic not near genes chr3L_9_10415001 chr3L_10415001 RAL-358 627 chr3L 10450699 10450705 chr3L 10450778 10450785 6 80 0.0 0.5 0.2 5.0 86 chr3L 10450699 intergenic not near genes chr3L 10450742 intergenic not near genes chr3L 10450785 intergenic not near genes chr3L_6_10450001 chr3L_10450001 RAL-358 628 chr3L 10497977 10498000 chr3L 10498134 10498157 6 157 4.5 2.5 3.5 1.3 180 chr3L 10497977 intron A2bp1 + chr3L 10498067 intron A2bp1 + chr3L 10498157 intron A2bp1 + chr3L_6_10495001 chr3L_10495001 RAL-358 629 chr3L 10559505 10559514 chr3L 10559851 10559861 4 347 2.5 2.5 2.5 1.1 356 chr3L 10559505 intron A2bp1 + chr3L 10559683 intron A2bp1 + chr3L 10559861 intron A2bp1 + chr3L_4_10555001 chr3L_10555001 RAL-358 630 chr3L 10623885 10623898 chr3L 10625122 10625138 8 1240 1.5 14.0 7.8 0.9 1253 chr3L 10623885 intergenic CG42521 - chr3L 10624512 intergenic CG43127 - chr3L 10625138 exon CG43127 - chr3L_8_10620001 chr3L_10620001 RAL-358 631 chr3L 10624682 10624698 chr3L 10631719 10631735 7 7037 0.0 7.5 3.8 1.5 7053 chr3L 10624682 intergenic CG43127 - chr3L 10628208 exon CG14151 - chr3L 10631735 intron,exon CG34001 +,hay + chr3L_7_10625001 chr3L_10625001 RAL-358 632 chr3L 10658077 10658209 chr3L 10658154 10658336 8 114 2.0 2.0 2.0 2.7 259 chr3L 10658077 intron CG32066 - chr3L 10658206 intron CG32066 - chr3L 10658336 intron CG32066 - chr3L_8_10655001 chr3L_10655001 RAL-358 633 chr3L 10762829 10762858 chr3L 10762913 10762942 4 84 0.5 1.5 1.0 2.0 113 chr3L 10762829 intergenic not near genes chr3L 10762886 intergenic not near genes chr3L 10762942 intergenic not near genes chr3L_4_10760001 chr3L_10760001 RAL-358 634 chr3L 10795065 10795077 chr3L 10795144 10795157 6 80 0.0 0.0 0.0 6.0 92 chr3L 10795065 5` UTR CR44546 + chr3L 10795111 5` UTR CR44546 + chr3L 10795157 5` UTR CR44546 + chr3L_6_10795001 chr3L_10795001 RAL-358 635 chr3L 10918732 10918754 chr3L 10918835 10918858 5 102 0.5 1.5 1.0 2.5 126 chr3L 10918732 intergenic not near genes chr3L 10918795 intergenic not near genes chr3L 10918858 intergenic not near genes chr3L_5_10915001 chr3L_10915001 RAL-358 636 chr3L 11083510 11083531 chr3L 11083608 11083629 6 98 1.5 0.5 1.0 3.0 119 chr3L 11083510 intron JIL-1 - chr3L 11083570 intron JIL-1 - chr3L 11083629 intron JIL-1 - chr3L_6_11080001 chr3L_11080001 RAL-358 637 chr3L 11087058 11087085 chr3L 11088847 11088874 S-element 6 1788 0.5 1.0 0.8 3.3 1816 chr3L 11087058 intron JIL-1 - chr3L 11087966 intron JIL-1 - chr3L 11088874 intron JIL-1 - chr3L_6_11085001 chr3L_11085001 RAL-358 638 chr3L 11127928 11127951 chr3L 11128031 11128054 7 103 3.0 1.5 2.2 2.2 126 chr3L 11127928 intron CG42575 + chr3L 11127991 intron CG42575 + chr3L 11128054 intron CG42575 + chr3L_7_11125001 chr3L_11125001 RAL-358 639 chr3L 11191048 11191065 chr3L 11191142 11191159 9 94 1.5 0.0 0.8 5.0 111 chr3L 11191048 intron GlcAT-P - chr3L 11191104 intron GlcAT-P - chr3L 11191159 intron GlcAT-P - chr3L_9_11190001 chr3L_11190001 RAL-358 640 chr3L 11264472 11264483 chr3L 11271424 11271435 17.6 4 6952 2.0 2.0 2.0 1.3 6963 chr3L 11264472 intergenic not near genes chr3L 11267954 intergenic not near genes chr3L 11271435 intergenic not near genes chr3L_4_11265001 chr3L_11265001 RAL-358 641 chr3L 11329695 11329716 chr3L 11332899 11332919 jockey 5 3204 1.0 2.0 1.5 2.0 3224 chr3L 11329695 intergenic not near genes chr3L 11331307 intergenic not near genes chr3L 11332919 intergenic not near genes chr3L_5_11330001 chr3L_11330001 RAL-358 642 chr3L 11549589 11549609 chr3L 11549814 11549835 6 226 3.0 1.0 2.0 2.0 246 chr3L 11549589 intron Mob2 - chr3L 11549712 intron Mob2 - chr3L 11549835 intron Mob2 - chr3L_6_11545001 chr3L_11545001 RAL-358 643 chr3L 11550301 11550314 chr3L 11550599 11550612 4 298 1.5 2.5 2.0 1.3 311 chr3L 11550301 intron Mob2 - chr3L 11550456 intron Mob2 - chr3L 11550612 intron Mob2 - chr3L_4_11550001 chr3L_11550001 RAL-358 644 chr3L 11588734 11588757 chr3L 11588890 11588913 6 155 2.5 1.0 1.8 2.1 179 chr3L 11588734 intergenic not near genes chr3L 11588824 intergenic not near genes chr3L 11588913 intergenic not near genes chr3L_6_11585001 chr3L_11585001 RAL-358 645 chr3L 11642838 11642847 chr3L 11642915 11642924 5 77 2.5 3.5 3.0 1.2 86 chr3L 11642838 3` UTR CG32091 + chr3L 11642881 3` UTR CG32091 + chr3L 11642924 3` UTR CG6071 - chr3L_5_11640001 chr3L_11640001 RAL-358 646 chr3L 11678098 11678117 chr3L 11678185 11678204 6 87 1.0 2.5 1.8 2.1 106 chr3L 11678098 intron CG32085 - chr3L 11678151 intron CG32085 - chr3L 11678204 intron CG32085 - chr3L_6_11675001 chr3L_11675001 RAL-358 647 chr3L 11723088 11723113 chr3L 11727883 11727908 Doc 5 4795 0.0 2.5 1.2 2.3 4820 chr3L 11723088 3` UTR Bmcp + chr3L 11725498 intron Bmcp + chr3L 11727908 3` UTR Bmcp + chr3L_5_11725001 chr3L_11725001 RAL-358 648 chr3L 11744015 11744039 chr3L 11744123 11744147 8 108 2.5 0.0 1.2 3.6 132 chr3L 11744015 exon CG6024 - chr3L 11744081 intron CG6024 - chr3L 11744147 intron CG6024 - chr3L_8_11740001 chr3L_11740001 RAL-358 649 chr3L 7749470 7749470 chr3L 11777678 11777678 4 4028208 4.5 4.0 4.2 0.8 4028208 chr3L 7749470 intron,3` UTR CG32373 +,CG13685 + chr3L 9763574 5` UTR CG8177 + chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_4_9760001 chr3L_9760001 RAL-358 650 chr3L 11786244 11786272 chr3L 11787062 11787088 9 816 8.5 15.5 12.0 0.7 844 chr3L 11786244 intron Pi3K68D - chr3L 11786666 intron Pi3K68D - chr3L 11787088 exon Pi3K68D - chr3L_9_11785001 chr3L_11785001 RAL-358 651 chr3L 11974333 11974355 chr3L 11974413 11974435 5 80 0.0 0.0 0.0 5.0 102 chr3L 11974333 intergenic not near genes chr3L 11974384 intergenic not near genes chr3L 11974435 intergenic CG14125 + chr3L_5_11970001 chr3L_11970001 RAL-358 652 chr3L 12019324 12019345 chr3L 12019437 12019458 4 113 1.5 3.5 2.5 1.1 134 chr3L 12019324 intron rols - chr3L 12019391 intron rols - chr3L 12019458 intron rols - chr3L_4_12015001 chr3L_12015001 RAL-358 653 chr3L 12052714 12052714 chr3L 12052803 12052803 4 89 2.5 3.5 3.0 1.0 89 chr3L 12052714 intron rols - chr3L 12052758 intron rols - chr3L 12052803 intron rols - chr3L_4_12050001 chr3L_12050001 RAL-358 654 chr3L 12089091 12089109 chr3L 12089170 12089189 10 80 1.0 1.5 1.2 4.5 98 chr3L 12089091 3` UTR CG17154 + chr3L 12089140 3` UTR CG17154 + chr3L 12089189 3` UTR CG17154 + chr3L_10_12085001 chr3L_12085001 RAL-358 655 chr3L 12221449 12221470 chr3L 12221556 12221577 5 107 1.0 4.0 2.5 1.4 128 chr3L 12221449 intron app - chr3L 12221513 intron app - chr3L 12221577 intron app - chr3L_5_12220001 chr3L_12220001 RAL-358 656 chr3L 12234336 12234355 chr3L 12234425 12234444 7 89 4.5 2.5 3.5 1.6 108 chr3L 12234336 intron app - chr3L 12234390 intron app - chr3L 12234444 intron app - chr3L_7_12230001 chr3L_12230001 RAL-358 657 chr3L 12310933 12310947 chr3L 12311028 12311044 6 96 2.0 0.0 1.0 3.0 111 chr3L 12310933 intron CG44355 + chr3L 12310988 intron CG44355 + chr3L 12311044 5` UTR CG44355 + chr3L_6_12310001 chr3L_12310001 RAL-358 658 chr3L 12353932 12353952 chr3L 12354021 12354041 8 89 0.5 4.5 2.5 2.3 109 chr3L 12353932 intergenic not near genes chr3L 12353986 intergenic not near genes chr3L 12354041 intergenic not near genes chr3L_8_12350001 chr3L_12350001 RAL-358 659 chr3L 12430217 12430224 chr3L 12430302 12430309 4 85 0.5 0.5 0.5 2.7 92 chr3L 12430217 intron toe - chr3L 12430263 intron toe - chr3L 12430309 intron toe - chr3L_4_12430001 chr3L_12430001 RAL-358 660 chr3L 12446269 12446293 chr3L 12446347 12446371 4 78 3.0 1.5 2.2 1.2 102 chr3L 12446269 intergenic not near genes chr3L 12446320 intergenic not near genes chr3L 12446371 intergenic not near genes chr3L_4_12445001 chr3L_12445001 RAL-358 661 chr3L 12610998 12611015 chr3L 12611244 12611261 4 246 0.0 2.0 1.0 2.0 263 chr3L 12610998 intron caup + chr3L 12611130 intron caup + chr3L 12611261 intron caup + chr3L_4_12610001 chr3L_12610001 RAL-358 662 chr3L 11777678 11777678 chr3L 12638619 12638625 6 860942 4.5 8.5 6.5 0.8 860947 chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L 12208152 intron app - chr3L 12638625 intron CR32111 + chr3L_6_12205001 chr3L_12205001 RAL-358 663 chr3L 12654383 12654413 chr3L 12654463 12654491 9 80 1.0 2.5 1.8 3.2 108 chr3L 12654383 intergenic not near genes chr3L 12654437 intergenic not near genes chr3L 12654491 intergenic not near genes chr3L_9_12650001 chr3L_12650001 RAL-358 664 chr3L 12720343 12720360 chr3L 12720428 12720445 9 85 0.0 5.0 2.5 2.6 102 chr3L 12720343 intergenic not near genes chr3L 12720394 intergenic not near genes chr3L 12720445 intergenic not near genes chr3L_9_12720001 chr3L_12720001 RAL-358 665 chr3L 12801987 12802011 chr3L 12802063 12802087 5 76 0.0 1.0 0.5 3.3 100 chr3L 12801987 intron Atg1 - chr3L 12802037 intron Atg1 - chr3L 12802087 intron Atg1 - chr3L_5_12800001 chr3L_12800001 RAL-358 666 chr3L 12874927 12874950 chr3L 12877219 12877242 jockey 10 2292 2.0 0.0 1.0 5.0 2315 chr3L 12874927 intergenic not near genes chr3L 12876084 intergenic not near genes chr3L 12877242 intergenic not near genes chr3L_10_12875001 chr3L_12875001 RAL-358 667 chr3L 12919287 12919299 chr3L 12924757 12924772 Rt1c 6 5472 1.0 0.5 0.8 3.3 5485 chr3L 12919287 intergenic not near genes chr3L 12922030 intergenic not near genes chr3L 12924772 intergenic not near genes chr3L_6_12920001 chr3L_12920001 RAL-358 668 chr3L 12957792 12957816 chr3L 12962273 12962298 copia 4 4482 1.5 3.0 2.2 1.2 4506 chr3L 12957792 intergenic not near genes chr3L 12960045 intergenic not near genes chr3L 12962298 intergenic not near genes chr3L_4_12960001 chr3L_12960001 RAL-358 669 chr3L 12978521 12978780 chr3L 12978601 12978859 6 79 2.0 2.5 2.2 1.9 338 chr3L 12978521 intergenic not near genes chr3L 12978690 intergenic not near genes chr3L 12978859 intergenic not near genes chr3L_6_12975001 chr3L_12975001 RAL-358 670 chr3L 13015737 13015749 chr3L 13015819 13015831 5 82 0.5 4.5 2.5 1.4 94 chr3L 13015737 intergenic CG11267 +,MICAL-like - chr3L 13015784 intergenic CG11267 +,MICAL-like - chr3L 13015831 intergenic CG11267 +,MICAL-like - chr3L_5_13015001 chr3L_13015001 RAL-358 671 chr3L 13194068 13194097 chr3L 13194147 13194176 8 79 0.5 2.5 1.5 3.2 108 chr3L 13194068 intergenic not near genes chr3L 13194122 intergenic not near genes chr3L 13194176 intergenic not near genes chr3L_8_13190001 chr3L_13190001 RAL-358 672 chr3L 13299403 13299406 chr3L 13299494 13299497 4 90 2.0 1.0 1.5 1.6 94 chr3L 13299403 intergenic CG42481 -,CG43147 - chr3L 13299450 intergenic CG43147 -,CG42481 - chr3L 13299497 intergenic CG43147 -,CG42481 - chr3L_4_13295001 chr3L_13295001 RAL-358 673 chr3L 13400536 13400542 chr3L 13400612 13400618 4 76 2.0 2.0 2.0 1.3 82 chr3L 13400536 intron sens - chr3L 13400577 intron sens - chr3L 13400618 intron sens - chr3L_4_13400001 chr3L_13400001 RAL-358 674 chr3L 13525161 13525186 chr3L 13532957 13532981 roo 4 7796 2.5 3.5 3.0 1.0 7820 chr3L 13525161 intergenic not near genes chr3L 13529071 intergenic not near genes chr3L 13532981 intergenic not near genes chr3L_4_13525001 chr3L_13525001 RAL-358 675 chr3L 13595032 13595040 chr3L 13595112 13595120 4 80 1.0 3.5 2.2 1.2 88 chr3L 13595032 intron bru-3 - chr3L 13595076 intron bru-3 - chr3L 13595120 intron bru-3 - chr3L_4_13595001 chr3L_13595001 RAL-358 676 chr3L 13626693 13626720 chr3L 13626777 13626804 6 84 0.5 2.0 1.2 2.7 111 chr3L 13626693 intron bru-3 - chr3L 13626748 intron bru-3 - chr3L 13626804 intron bru-3 - chr3L_6_13625001 chr3L_13625001 RAL-358 677 chr3L 13629529 13629542 chr3L 13629639 13629653 5 111 3.5 7.0 5.2 0.8 124 chr3L 13629529 intron bru-3 - chr3L 13629591 intron bru-3 - chr3L 13629653 intron bru-3 - chr3L_5_13625001 chr3L_13625001 RAL-358 678 chr3L 13633414 13633443 chr3L 13633768 13633796 9 353 1.0 3.0 2.0 3.0 382 chr3L 13633414 intron bru-3 - chr3L 13633605 intron bru-3 - chr3L 13633796 intron bru-3 - chr3L_9_13630001 chr3L_13630001 RAL-358 679 chr3L 13648886 13648921 chr3L 13648975 13649011 9 90 0.0 1.0 0.5 6.0 125 chr3L 13648886 intron bru-3 - chr3L 13648948 intron bru-3 - chr3L 13649011 intron bru-3 - chr3L_9_13645001 chr3L_13645001 RAL-358 680 chr3L 13677537 13677745 chr3L 13677614 13677901 7 88 0.0 0.0 0.0 7.0 364 chr3L 13677537 intron bru-3 - chr3L 13677719 intron bru-3 - chr3L 13677901 intron bru-3 - chr3L_7_13675001 chr3L_13675001 RAL-358 681 chr3L 13804566 13804577 chr3L 13822852 13822863 roo 4 18286 2.0 3.0 2.5 1.1 18297 chr3L 13804566 intergenic not near genes chr3L 13813714 intergenic not near genes chr3L 13822863 intergenic not near genes chr3L_4_13810001 chr3L_13810001 RAL-358 682 chr3L 13901575 13901596 chr3L 13901651 13901673 5 77 1.0 0.5 0.8 2.8 98 chr3L 13901575 intron dysc - chr3L 13901624 intron dysc - chr3L 13901673 intron dysc - chr3L_5_13900001 chr3L_13900001 RAL-358 683 chr3L 13931344 13931368 chr3L 13931448 13931472 4 104 0.0 0.5 0.2 3.3 128 chr3L 13931344 intron Gl + chr3L 13931408 intron Gl + chr3L 13931472 intron Gl + chr3L_4_13930001 chr3L_13930001 RAL-358 684 chr3L 14004441 14004470 chr3L 14004520 14004549 5 79 0.0 3.0 1.5 2.0 108 chr3L 14004441 intron upSET + chr3L 14004495 intron upSET + chr3L 14004549 intron upSET + chr3L_5_14000001 chr3L_14000001 RAL-358 685 chr3L 14087595 14087615 chr3L 14087678 14087700 4 84 1.0 1.0 1.0 2.0 105 chr3L 14087595 intergenic not near genes chr3L 14087648 intergenic not near genes chr3L 14087700 intergenic not near genes chr3L_4_14085001 chr3L_14085001 RAL-358 686 chr3L 14296008 14296014 chr3L 14296492 14296499 roo 6 485 0.5 4.5 2.5 1.7 491 chr3L 14296008 intron fz + chr3L 14296254 intron fz + chr3L 14296499 intron fz + chr3L_6_14295001 chr3L_14295001 RAL-358 687 chr3L 14338309 14338328 chr3L 14338405 14338424 5 96 0.0 1.0 0.5 3.3 115 chr3L 14338309 intron fz + chr3L 14338366 intron fz + chr3L 14338424 intron fz + chr3L_5_14335001 chr3L_14335001 RAL-358 688 chr3L 14356531 14356552 chr3L 14356611 14356632 6 80 0.0 1.5 0.8 3.3 101 chr3L 14356531 intron fz + chr3L 14356582 intron fz + chr3L 14356632 intron fz + chr3L_6_14355001 chr3L_14355001 RAL-358 689 chr3L 14411868 14411897 chr3L 14411947 14411976 4 79 1.5 1.5 1.5 1.6 108 chr3L 14411868 intron CG3919 + chr3L 14411922 intron CG3919 + chr3L 14411976 intron CG3919 + chr3L_4_14410001 chr3L_14410001 RAL-358 690 chr3L 14546607 14546811 chr3L 14546687 14546891 8 81 0.0 1.0 0.5 5.3 284 chr3L 14546607 intron CG9238 - chr3L 14546749 intron CG9238 - chr3L 14546891 intron CG9238 - chr3L_8_14545001 chr3L_14545001 RAL-358 691 chr3L 14565755 14565778 chr3L 14565846 14565868 4 90 2.0 1.0 1.5 1.6 113 chr3L 14565755 intergenic not near genes chr3L 14565812 intergenic not near genes chr3L 14565868 intergenic not near genes chr3L_4_14565001 chr3L_14565001 RAL-358 692 chr3L 14721187 14721198 chr3L 14723030 14723039 Rt1c 8 1843 4.5 1.0 2.8 2.1 1852 chr3L 14721187 intron ome + chr3L 14722113 intron ome + chr3L 14723039 intron ome + chr3L_8_14720001 chr3L_14720001 RAL-358 693 chr3L 14954367 14954387 chr3L 14956036 14956056 transib2 6 1669 0.5 1.0 0.8 3.3 1689 chr3L 14954367 intergenic not near genes chr3L 14955212 intergenic not near genes chr3L 14956056 intergenic not near genes chr3L_6_14955001 chr3L_14955001 RAL-358 694 chr3L 15057901 15057927 chr3L 15058005 15058031 4 102 1.0 0.5 0.8 2.2 130 chr3L 15057901 intron Sytbeta - chr3L 15057966 intron Sytbeta - chr3L 15058031 intron Sytbeta - chr3L_4_15055001 chr3L_15055001 RAL-358 695 chr3L 15085055 15085084 chr3L 15086221 15086250 1360 4 1166 1.5 0.5 1.0 2.0 1195 chr3L 15085055 intron cp309 - chr3L 15085652 intron cp309 - chr3L 15086250 intron cp309 - chr3L_4_15085001 chr3L_15085001 RAL-358 696 chr3L 15165034 15165046 chr3L 15165133 15165145 4 99 0.0 0.0 0.0 4.0 111 chr3L 15165034 intergenic not near genes chr3L 15165090 intergenic not near genes chr3L 15165145 intergenic not near genes chr3L_4_15165001 chr3L_15165001 RAL-358 697 chr3L 15384957 15384976 chr3L 15385084 15385104 8 128 1.0 3.0 2.0 2.7 147 chr3L 15384957 intergenic not near genes chr3L 15385030 intergenic not near genes chr3L 15385104 intergenic not near genes chr3L_8_15385001 chr3L_15385001 RAL-358 698 chr3L 15406019 15406045 chr3L 15406101 15406123 4 82 0.5 1.5 1.0 2.0 104 chr3L 15406019 intergenic not near genes chr3L 15406071 intergenic not near genes chr3L 15406123 intergenic not near genes chr3L_4_15405001 chr3L_15405001 RAL-358 699 chr3L 15444652 15444676 chr3L 15444746 15444770 11 93 0.5 3.5 2.0 3.7 118 chr3L 15444652 intergenic not near genes chr3L 15444711 intergenic not near genes chr3L 15444770 intergenic not near genes chr3L_11_15440001 chr3L_15440001 RAL-358 700 chr3L 15466524 15466537 chr3L 15466608 15466621 5 84 1.0 2.5 1.8 1.8 97 chr3L 15466524 intergenic not near genes chr3L 15466572 intergenic not near genes chr3L 15466621 intergenic not near genes chr3L_5_15465001 chr3L_15465001 RAL-358 701 chr3L 15483300 15483323 chr3L 15483429 15483452 8 129 2.5 6.5 4.5 1.5 152 chr3L 15483300 intergenic not near genes chr3L 15483376 intergenic not near genes chr3L 15483452 intergenic not near genes chr3L_8_15480001 chr3L_15480001 RAL-358 702 chr3L 15541617 15541633 chr3L 15541708 15541724 5 91 3.0 0.0 1.5 2.0 107 chr3L 15541617 intron CrebA + chr3L 15541670 intron CrebA + chr3L 15541724 intron CrebA + chr3L_5_15540001 chr3L_15540001 RAL-358 703 chr3L 15633188 15633211 chr3L 15633268 15633291 5 80 1.0 0.0 0.5 3.3 103 chr3L 15633188 intron comm3 - chr3L 15633240 intron comm3 - chr3L 15633291 intron comm3 - chr3L_5_15630001 chr3L_15630001 RAL-358 704 chr3L 15695983 15695999 chr3L 15696057 15696077 5 77 1.5 3.0 2.2 1.6 94 chr3L 15695983 intergenic not near genes chr3L 15696030 intergenic not near genes chr3L 15696077 intergenic not near genes chr3L_5_15695001 chr3L_15695001 RAL-358 705 chr3L 15836265 15836269 chr3L 15836351 15836354 4 86 3.0 3.0 3.0 1.0 89 chr3L 15836265 intron CG15715 - chr3L 15836310 intron CG15715 - chr3L 15836354 intron CG15715 - chr3L_4_15835001 chr3L_15835001 RAL-358 706 chr3L 15899227 15899241 chr3L 15899794 15899808 jockey 7 564 1.0 1.0 1.0 3.5 581 chr3L 15899227 intergenic pHCl - chr3L 15899518 intergenic pHCl - chr3L 15899808 intergenic sff - chr3L_7_15895001 chr3L_15895001 RAL-358 707 chr3L 15915136 15915167 chr3L 15915218 15915249 8 82 2.5 1.0 1.8 2.9 113 chr3L 15915136 intron sff - chr3L 15915192 intron sff - chr3L 15915249 intron sff - chr3L_8_15915001 chr3L_15915001 RAL-358 708 chr3L 16072318 16072326 chr3L 16072400 16072408 4 80 4.0 3.0 3.5 0.9 90 chr3L 16072318 intron Mbs + chr3L 16072363 intron Mbs + chr3L 16072408 intron Mbs + chr3L_4_16070001 chr3L_16070001 RAL-358 709 chr3L 16158808 16158836 chr3L 16158893 16158921 8 85 0.0 2.5 1.2 3.6 113 chr3L 16158808 intron CG5151 - chr3L 16158864 intron CG5151 - chr3L 16158921 intron CG5151 - chr3L_8_16155001 chr3L_16155001 RAL-358 710 chr3L 16194346 16194354 chr3L 16194436 16194444 4 90 0.5 0.0 0.2 3.3 98 chr3L 16194346 intergenic not near genes chr3L 16194395 intergenic not near genes chr3L 16194444 intergenic not near genes chr3L_4_16190001 chr3L_16190001 RAL-358 711 chr3L 16212810 16212842 chr3L 16212901 16212932 15 91 0.0 0.5 0.2 12.5 122 chr3L 16212810 intergenic CG13073 - chr3L 16212871 intergenic CG13073 - chr3L 16212932 intergenic CG13073 - chr3L_15_16210001 chr3L_16210001 RAL-358 712 chr3L 16360883 16360911 chr3L 16360961 16360989 10 78 4.0 1.5 2.8 2.6 106 chr3L 16360883 intron CG45057 - chr3L 16360936 intron CG45057 - chr3L 16360989 intron CG45057 - chr3L_10_16360001 chr3L_16360001 RAL-358 713 chr3L 16443860 16443875 chr3L 16446198 16446215 Doc 4 2340 1.5 5.5 3.5 0.9 2355 chr3L 16443860 intron,intron CG33158 +,dsx-c73A - chr3L 16445038 intron,intron CG33158 +,dsx-c73A - chr3L 16446215 intron,intron CG33158 +,dsx-c73A - chr3L_4_16445001 chr3L_16445001 RAL-358 714 chr3L 16493978 16494010 chr3L 16494494 16494527 jockey 10 517 3.5 1.5 2.5 2.9 549 chr3L 16493978 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494252 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494527 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_10_16490001 chr3L_16490001 RAL-358 715 chr3L 16503575 16503581 chr3L 16503815 16503821 4 240 1.0 4.5 2.8 1.1 246 chr3L 16503575 intron CG43373 - chr3L 16503698 intron CG43373 - chr3L 16503821 intron CG43373 - chr3L_4_16500001 chr3L_16500001 RAL-358 716 chr3L 16506680 16506689 chr3L 16506871 16506882 5 193 2.0 4.0 3.0 1.2 202 chr3L 16506680 intron CG43373 - chr3L 16506781 intron CG43373 - chr3L 16506882 intron CG43373 - chr3L_5_16505001 chr3L_16505001 RAL-358 717 chr3L 16521812 16521838 chr3L 16521903 16521926 4 91 2.0 5.5 3.8 0.8 114 chr3L 16521812 intron CG43373 - chr3L 16521869 intron CG43373 - chr3L 16521926 intron CG43373 - chr3L_4_16520001 chr3L_16520001 RAL-358 718 chr3L 16540053 16540081 chr3L 16540141 16540168 5 88 0.5 0.0 0.2 4.2 115 chr3L 16540053 intron CG43373 - chr3L 16540110 intron CG43373 - chr3L 16540168 intron CG43373 - chr3L_5_16540001 chr3L_16540001 RAL-358 719 chr3L 16562735 16562746 chr3L 16563144 16563157 6 411 2.0 3.0 2.5 1.7 422 chr3L 16562735 intergenic not near genes chr3L 16562946 intergenic not near genes chr3L 16563157 intergenic Mipp1 - chr3L_6_16560001 chr3L_16560001 RAL-358 720 chr3L 16616523 16616539 chr3L 16621851 16621867 297 4 5328 2.0 4.5 3.2 1.0 5344 chr3L 16616523 3` UTR Abl - chr3L 16619195 3` UTR Abl - chr3L 16621867 3` UTR Abl - chr3L_4_16615001 chr3L_16615001 RAL-358 721 chr3L 16698385 16698404 chr3L 16698481 16698500 6 96 1.5 0.0 0.8 3.3 115 chr3L 16698385 intron,intron Lasp -,CG43954 - chr3L 16698442 intron,intron Lasp -,CG43954 - chr3L 16698500 intron,intron Lasp -,CG43954 - chr3L_6_16695001 chr3L_16695001 RAL-358 722 chr3L 16772494 16772501 chr3L 16772584 16772591 4 90 2.0 1.0 1.5 1.6 97 chr3L 16772494 intron Nrt + chr3L 16772542 intron Nrt + chr3L 16772591 intron Nrt + chr3L_4_16770001 chr3L_16770001 RAL-358 723 chr3L 16800582 16800612 chr3L 16800720 16800750 12 137 0.5 4.0 2.2 3.8 168 chr3L 16800582 intron CG9674 - chr3L 16800666 intron CG9674 - chr3L 16800750 intron CG9674 - chr3L_12_16800001 chr3L_16800001 RAL-358 724 chr3L 16817880 16817904 chr3L 16818020 16818044 4 140 0.5 2.0 1.2 1.8 164 chr3L 16817880 intron,intron nudC +,CG13024 - chr3L 16817962 intron,intron nudC +,CG13024 - chr3L 16818044 intron,intron nudC +,CG13024 - chr3L_4_16815001 chr3L_16815001 RAL-358 725 chr3L 16818753 16818772 chr3L 16818829 16818848 9 75 0.5 6.0 3.2 2.1 95 chr3L 16818753 intron,intron nudC +,CG13024 - chr3L 16818800 intron,intron nudC +,CG13024 - chr3L 16818848 intron,intron nudC +,CG13024 - chr3L_9_16815001 chr3L_16815001 RAL-358 726 chr3L 16873342 16873362 chr3L 16873447 16873467 7 105 3.0 1.0 2.0 2.3 125 chr3L 16873342 intron Lmpt + chr3L 16873404 intron Lmpt + chr3L 16873467 intron Lmpt + chr3L_7_16870001 chr3L_16870001 RAL-358 727 chr3L 16945728 16945761 chr3L 16954881 16954914 roo 10 9153 1.0 3.0 2.0 3.3 9186 chr3L 16945728 exon Obp73a + chr3L 16950321 intergenic not near genes chr3L 16954914 5` UTR Nc73EF + chr3L_10_16950001 chr3L_16950001 RAL-358 728 chr3L 17027166 17027183 chr3L 17027258 17027275 5 92 1.0 0.0 0.5 3.3 109 chr3L 17027166 intergenic Fit2 +,CG7730 + chr3L 17027220 intergenic Fit2 +,CG7730 + chr3L 17027275 intergenic Fit2 +,CG7730 + chr3L_5_17025001 chr3L_17025001 RAL-358 729 chr3L 17085003 17085025 chr3L 17094152 17094174 roo 4 9149 2.0 2.5 2.2 1.2 9171 chr3L 17085003 intron Rbp6 - chr3L 17089588 intron Rbp6 - chr3L 17094174 intron Rbp6 - chr3L_4_17085001 chr3L_17085001 RAL-358 730 chr3L 17164017 17164041 chr3L 17164095 17164118 7 78 2.5 1.0 1.8 2.5 101 chr3L 17164017 intron Rbp6 - chr3L 17164068 intron Rbp6 - chr3L 17164118 intron Rbp6 - chr3L_7_17160001 chr3L_17160001 RAL-358 731 chr3L 17281642 17281672 chr3L 17281736 17281766 4 94 3.0 1.5 2.2 1.2 124 chr3L 17281642 intergenic not near genes chr3L 17281704 intergenic not near genes chr3L 17281766 intergenic not near genes chr3L_4_17280001 chr3L_17280001 RAL-358 732 chr3L 17535826 17535826 chr3L 17535940 17535940 4 114 1.0 4.0 2.5 1.1 114 chr3L 17535826 intron Nedd4 + chr3L 17535883 intron Nedd4 + chr3L 17535940 intron Nedd4 + chr3L_4_17535001 chr3L_17535001 RAL-358 733 chr3L 17580585 17580603 chr3L 17580761 17580779 7 176 1.5 0.0 0.8 3.9 194 chr3L 17580585 intron Eip74EF - chr3L 17580682 intron Eip74EF - chr3L 17580779 intron Eip74EF - chr3L_7_17580001 chr3L_17580001 RAL-358 734 chr3L 17730849 17730869 chr3L 17738179 17738199 mdg1 5 7330 3.0 0.0 1.5 2.0 7350 chr3L 17730849 intron Ccn + chr3L 17734524 intron Ccn + chr3L 17738199 intron Ccn + chr3L_5_17730001 chr3L_17730001 RAL-358 735 chr3L 17745161 17745176 chr3L 17745240 17745255 5 79 0.0 4.0 2.0 1.7 94 chr3L 17745161 intron Ccn + chr3L 17745208 intron,3` UTR Ccn +,CG6034 - chr3L 17745255 intron,3` UTR Ccn +,CG6034 - chr3L_5_17745001 chr3L_17745001 RAL-358 736 chr3L 17834327 17834355 chr3L 17834491 17834519 8 164 1.5 1.0 1.2 3.6 192 chr3L 17834327 intron Grd + chr3L 17834423 intron Grd + chr3L 17834519 intron Grd + chr3L_8_17830001 chr3L_17830001 RAL-358 737 chr3L 17991585 17991589 chr3L 17991662 17991667 5 78 2.0 3.0 2.5 1.4 82 chr3L 17991585 intron Eip75B - chr3L 17991626 intron Eip75B - chr3L 17991667 intron Eip75B - chr3L_5_17990001 chr3L_17990001 RAL-358 738 chr3L 18163980 18164236 chr3L 18164182 18164403 6 196 0.0 0.0 0.0 6.0 423 chr3L 18163980 intergenic not near genes chr3L 18164192 intergenic not near genes chr3L 18164403 intergenic not near genes chr3L_6_18160001 chr3L_18160001 RAL-358 739 chr3L 18223170 18223174 chr3L 18223253 18223257 4 83 2.0 0.0 1.0 2.0 87 chr3L 18223170 intergenic not near genes chr3L 18223214 intergenic not near genes chr3L 18223257 intergenic not near genes chr3L_4_18220001 chr3L_18220001 RAL-358 740 chr3L 18268123 18268147 chr3L 18268204 18268222 5 80 1.0 1.0 1.0 2.5 99 chr3L 18268123 intergenic not near genes chr3L 18268172 intergenic not near genes chr3L 18268222 intergenic not near genes chr3L_5_18265001 chr3L_18265001 RAL-358 741 chr3L 18408742 18408754 chr3L 18408827 18408840 7 86 0.5 0.0 0.2 5.8 98 chr3L 18408742 intergenic not near genes chr3L 18408791 intergenic not near genes chr3L 18408840 intergenic not near genes chr3L_7_18405001 chr3L_18405001 RAL-358 742 chr3L 9013689 9013693 chr3L 18417066 18417066 4 9403376 10.5 11.0 10.8 0.3 9403377 chr3L 9013689 intron Doc2 - chr3L 13715378 intron bru-3 - chr3L 18417066 intergenic not near genes chr3L_4_13715001 chr3L_13715001 RAL-358 743 chr3L 18457370 18457375 chr3L 18457486 18457489 4 115 2.5 0.0 1.2 1.8 119 chr3L 18457370 3` UTR CR44671 - chr3L 18457430 3` UTR CR44671 - chr3L 18457489 3` UTR CR44671 - chr3L_4_18455001 chr3L_18455001 RAL-358 744 chr3L 18528626 18528655 chr3L 18537787 18537816 roo 4 9161 1.5 1.0 1.2 1.8 9190 chr3L 18528626 intergenic not near genes chr3L 18533221 intergenic not near genes chr3L 18537816 intergenic not near genes chr3L_4_18530001 chr3L_18530001 RAL-358 745 chr3L 18593959 18593971 chr3L 18595939 18595950 Doc 7 1980 3.0 0.0 1.5 2.8 1991 chr3L 18593959 intergenic term - chr3L 18594954 intergenic not near genes chr3L 18595950 intergenic CR45389 + chr3L_7_18590001 chr3L_18590001 RAL-358 746 chr3L 18606752 18606763 chr3L 18606949 18606958 4 197 1.0 0.5 0.8 2.2 206 chr3L 18606752 intron,intron,exon CG13380 -,CG4174 -,CG18233 + chr3L 18606855 intron,intron,exon CG13380 -,CG4174 -,CG18233 + chr3L 18606958 intron,intron,exon CG13380 -,CG4174 -,CG18233 + chr3L_4_18605001 chr3L_18605001 RAL-358 747 chr3L 18928317 18928333 chr3L 18928404 18928421 7 87 0.0 2.0 1.0 3.5 104 chr3L 18928317 intron CG32204 - chr3L 18928369 intron CG32204 - chr3L 18928421 intron CG32204 - chr3L_7_18925001 chr3L_18925001 RAL-358 748 chr3L 18933624 18933642 chr3L 18933718 18933735 6 94 0.5 2.5 1.5 2.4 111 chr3L 18933624 intron CG32204 - chr3L 18933680 intron CG32204 - chr3L 18933735 intron CG32204 - chr3L_6_18930001 chr3L_18930001 RAL-358 749 chr3L 18969567 18969629 chr3L 18969643 18969725 9 91 1.0 2.0 1.5 3.6 158 chr3L 18969567 intergenic not near genes chr3L 18969646 intergenic not near genes chr3L 18969725 intergenic not near genes chr3L_9_18965001 chr3L_18965001 RAL-358 750 chr3L 19008853 19008868 chr3L 19009190 19009206 jockey 6 338 1.5 1.0 1.2 2.7 353 chr3L 19008853 intron nkd - chr3L 19009030 intron nkd - chr3L 19009206 intron nkd - chr3L_6_19005001 chr3L_19005001 RAL-358 751 chr3L 19041511 19041525 chr3L 19041601 19041610 5 88 0.0 2.0 1.0 2.5 99 chr3L 19041511 intron nkd - chr3L 19041560 intron nkd - chr3L 19041610 intron nkd - chr3L_5_19040001 chr3L_19040001 RAL-358 752 chr3L 19117056 19117066 chr3L 19124499 19124512 mdg1 7 7446 4.0 1.5 2.8 1.8 7456 chr3L 19117056 intron CG14082 - chr3L 19120784 intron CG14082 - chr3L 19124512 intron CG14082 - chr3L_7_19120001 chr3L_19120001 RAL-358 753 chr3L 19127731 19127763 chr3L 19127818 19127850 10 87 1.0 1.5 1.2 4.5 119 chr3L 19127731 intron CG14082 - chr3L 19127790 intron CG14082 - chr3L 19127850 intron CG14082 - chr3L_10_19125001 chr3L_19125001 RAL-358 754 chr3L 19208061 19208092 chr3L 19209434 19209466 Doc 5 1374 2.5 1.0 1.8 1.8 1405 chr3L 19208061 intron fz2 - chr3L 19208764 intron fz2 - chr3L 19209466 intron fz2 - chr3L_5_19205001 chr3L_19205001 RAL-358 755 chr3L 19210123 19210123 chr3L 19210216 19210219 4 95 0.0 2.0 1.0 2.0 96 chr3L 19210123 intron fz2 - chr3L 19210171 intron fz2 - chr3L 19210219 intron fz2 - chr3L_4_19210001 chr3L_19210001 RAL-358 756 chr3L 19220632 19220633 chr3L 22908066 22908067 6 3687434 7.5 5.0 6.2 0.8 3687435 chr3L 19220632 intron fz2 - chr3L 21064350 intron siz + chr3L 22908067 intergenic not near genes chr3L_6_21060001 chr3L_21060001 RAL-358 757 chr3L 19220637 19220637 chr3L 22908066 22908066 4 3687429 9.0 5.0 7.0 0.5 3687429 chr3L 19220637 intron fz2 - chr3L 21064352 intron siz + chr3L 22908066 intergenic not near genes chr3L_4_21060001 chr3L_21060001 RAL-358 758 chr3L 19238729 19238732 chr3L 19238836 19238839 4 106 2.0 0.5 1.2 1.8 110 chr3L 19238729 intergenic not near genes chr3L 19238784 intergenic not near genes chr3L 19238839 intergenic not near genes chr3L_4_19235001 chr3L_19235001 RAL-358 759 chr3L 19274199 19274210 chr3L 19274278 19274289 6 79 4.0 4.5 4.2 1.2 90 chr3L 19274199 intergenic CG14085 + chr3L 19274244 intergenic CG14085 + chr3L 19274289 intergenic CG14085 + chr3L_6_19270001 chr3L_19270001 RAL-358 760 chr3L 19369845 19369868 chr3L 19369927 19369950 4 82 2.5 0.5 1.5 1.6 105 chr3L 19369845 intron CG32206 - chr3L 19369898 intron CG32206 - chr3L 19369950 intron CG32206 - chr3L_4_19365001 chr3L_19365001 RAL-358 761 chr3L 19417801 19417818 chr3L 19417881 19417897 4 80 2.5 1.5 2.0 1.3 96 chr3L 19417801 intergenic not near genes chr3L 19417849 intergenic not near genes chr3L 19417897 intergenic not near genes chr3L_4_19415001 chr3L_19415001 RAL-358 762 chr3L 19426755 19426769 chr3L 19426832 19426846 4 77 0.5 4.0 2.2 1.2 91 chr3L 19426755 intergenic not near genes chr3L 19426800 intergenic not near genes chr3L 19426846 intergenic not near genes chr3L_4_19425001 chr3L_19425001 RAL-358 763 chr3L 19658324 19658348 chr3L 19658401 19658428 7 79 1.5 1.5 1.5 2.8 104 chr3L 19658324 intron tey - chr3L 19658376 intron tey - chr3L 19658428 intron tey - chr3L_7_19655001 chr3L_19655001 RAL-358 764 chr3L 19703844 19703864 chr3L 19703998 19704018 4 154 1.5 3.0 2.2 1.2 174 chr3L 19703844 intron serp - chr3L 19703931 intron serp - chr3L 19704018 intron serp - chr3L_4_19700001 chr3L_19700001 RAL-358 765 chr3L 19861831 19861848 chr3L 19863618 19863636 S-element 5 1788 0.5 0.5 0.5 3.3 1805 chr3L 19861831 5` UTR CR45433 + chr3L 19862734 intergenic not near genes chr3L 19863636 intergenic not near genes chr3L_5_19860001 chr3L_19860001 RAL-358 766 chr3L 19961289 19961299 chr3L 19961499 19961510 5 211 1.0 1.5 1.2 2.3 221 chr3L 19961289 intron Ac76E + chr3L 19961400 intron Ac76E + chr3L 19961510 intron Ac76E + chr3L_5_19960001 chr3L_19960001 RAL-358 767 chr3L 19962958 19962981 chr3L 19963035 19963059 6 78 0.0 3.0 1.5 2.4 101 chr3L 19962958 intron Ac76E + chr3L 19963008 intron Ac76E + chr3L 19963059 intron Ac76E + chr3L_6_19960001 chr3L_19960001 RAL-358 768 chr3L 20077007 20077032 chr3L 20077107 20077131 6 100 1.0 2.0 1.5 2.4 124 chr3L 20077007 intron sNPF-R - chr3L 20077069 intron sNPF-R - chr3L 20077131 intron sNPF-R - chr3L_6_20075001 chr3L_20075001 RAL-358 769 chr3L 20113657 20113689 chr3L 20122914 20122946 roo 8 9257 2.5 1.5 2.0 2.7 9289 chr3L 20113657 intergenic not near genes chr3L 20118302 intergenic not near genes chr3L 20122946 intergenic not near genes chr3L_8_20115001 chr3L_20115001 RAL-358 770 chr3L 20143078 20143110 chr3L 20143158 20143189 11 80 1.5 1.0 1.2 5.0 111 chr3L 20143078 intergenic not near genes chr3L 20143134 intergenic not near genes chr3L 20143189 intergenic not near genes chr3L_11_20140001 chr3L_20140001 RAL-358 771 chr3L 20156169 20156192 chr3L 20156291 20156313 7 122 1.0 1.5 1.2 3.2 144 chr3L 20156169 intron CG42674 - chr3L 20156241 intron CG42674 - chr3L 20156313 intron CG42674 - chr3L_7_20155001 chr3L_20155001 RAL-358 772 chr3L 20299572 20299594 chr3L 20306209 20306231 6 6636 16.0 19.5 17.8 0.3 6659 chr3L 20299572 exon,intron,5` UTR Pex23 -,CG6597 +,CR43872 + chr3L 20302902 intron CG6597 + chr3L 20306231 intron,5` UTR CG6597 +,CG32225 - chr3L_6_20300001 chr3L_20300001 RAL-358 773 chr3L 20849272 20849299 chr3L 20849351 20849378 5 79 3.5 0.5 2.0 1.7 106 chr3L 20849272 intron CG32432 - chr3L 20849325 intron CG32432 - chr3L 20849378 intron CG32432 - chr3L_5_20845001 chr3L_20845001 RAL-358 774 chr3L 20913754 20913782 chr3L 20913835 20913864 5 82 0.0 4.0 2.0 1.7 110 chr3L 20913754 intergenic CR43930 - chr3L 20913809 intergenic CR43930 - chr3L 20913864 intergenic CR43930 - chr3L_5_20910001 chr3L_20910001 RAL-358 775 chr3L 20917093 20917119 chr3L 20917170 20917195 8 76 1.0 1.5 1.2 3.6 102 chr3L 20917093 intergenic not near genes chr3L 20917144 intergenic not near genes chr3L 20917195 intergenic not near genes chr3L_8_20915001 chr3L_20915001 RAL-358 776 chr3L 20948668 20948690 chr3L 20948759 20948780 5 91 0.5 1.5 1.0 2.5 112 chr3L 20948668 intron fng - chr3L 20948724 intron fng - chr3L 20948780 intron fng - chr3L_5_20945001 chr3L_20945001 RAL-358 777 chr3L 20979154 20979169 chr3L 20979535 20979551 4 382 4.5 1.0 2.8 1.1 397 chr3L 20979154 intergenic not near genes chr3L 20979352 intergenic not near genes chr3L 20979551 intergenic not near genes chr3L_4_20975001 chr3L_20975001 RAL-358 778 chr3L 20986758 20986790 chr3L 20986836 20986868 8 77 4.0 0.5 2.2 2.5 110 chr3L 20986758 intergenic not near genes chr3L 20986813 intergenic not near genes chr3L 20986868 intergenic not near genes chr3L_8_20985001 chr3L_20985001 RAL-358 779 chr3L 21256537 21256563 chr3L 21256631 21256657 6 94 2.0 1.0 1.5 2.4 120 chr3L 21256537 intron Eip78C + chr3L 21256597 intron Eip78C + chr3L 21256657 intron Eip78C + chr3L_6_21255001 chr3L_21255001 RAL-358 780 chr3L 21303713 21303739 chr3L 21303800 21303826 7 87 0.5 1.0 0.8 3.9 113 chr3L 21303713 intron CG11309 - chr3L 21303770 intron CG11309 - chr3L 21303826 intron CG11309 - chr3L_7_21300001 chr3L_21300001 RAL-358 781 chr3L 21306149 21306181 chr3L 21315307 21315340 roo 12 9158 2.0 2.5 2.2 3.8 9191 chr3L 21306149 3` UTR,3` UTR CG7632 +,Pc - chr3L 21310744 intron Pc - chr3L 21315340 3` UTR Pc - chr3L_12_21310001 chr3L_21310001 RAL-358 782 chr3L 21437603 21437634 chr3L 21437710 21437740 8 107 1.0 1.0 1.0 4.0 137 chr3L 21437603 3` UTR Aef1 + chr3L 21437672 3` UTR Aef1 + chr3L 21437740 3` UTR Aef1 + chr3L_8_21435001 chr3L_21435001 RAL-358 783 chr3L 4341332 4341332 chr3L 21448027 21448027 4 17106695 9.5 6.5 8.0 0.4 17106695 chr3L 4341332 intron Cip4 - chr3L 12894680 3` UTR CG14118 + chr3L 21448027 3` UTR Syx7 + chr3L_4_12890001 chr3L_12890001 RAL-358 784 chr3L 21509671 21509681 chr3L 21509748 21509758 10 77 0.0 3.5 1.8 3.6 87 chr3L 21509671 intron M6 + chr3L 21509714 intron M6 + chr3L 21509758 intron M6 + chr3L_10_21505001 chr3L_21505001 RAL-358 785 chr3L 21637329 21637354 chr3L 21637416 21637441 10 87 2.0 3.0 2.5 2.9 112 chr3L 21637329 intron CG32444 + chr3L 21637385 intron CG32444 + chr3L 21637441 intron CG32444 + chr3L_10_21635001 chr3L_21635001 RAL-358 786 chr3L 21649782 21649804 chr3L 21650006 21650028 7 224 0.5 0.5 0.5 4.7 246 chr3L 21649782 intron CG43980 + chr3L 21649905 intron CG43980 + chr3L 21650028 intron CG43980 + chr3L_7_21645001 chr3L_21645001 RAL-358 787 chr3L 21736358 21736376 chr3L 21736558 21736577 7 199 0.0 4.0 2.0 2.3 219 chr3L 21736358 intergenic CR43888 + chr3L 21736468 intergenic CR43888 + chr3L 21736577 intergenic CR43888 + chr3L_7_21735001 chr3L_21735001 RAL-358 788 chr3L 21769079 21769085 chr3L 21769166 21769172 4 87 3.0 2.0 2.5 1.1 93 chr3L 21769079 intron,intron Syn1 -,CG42689 + chr3L 21769126 intron,intron Syn1 -,CG42689 + chr3L 21769172 intron,intron Syn1 -,CG42689 + chr3L_4_21765001 chr3L_21765001 RAL-358 789 chr3L 21776671 21776863 chr3L 21776758 21776967 4 95 0.5 0.5 0.5 2.7 296 chr3L 21776671 intron,intron CG42689 +,CG42552 + chr3L 21776819 intron,intron CG42689 +,CG42552 + chr3L 21776967 exon,intron CG42689 +,CG42552 + chr3L_4_21775001 chr3L_21775001 RAL-358 790 chr3L 21849501 21849528 chr3L 21849583 21849610 9 82 1.0 0.5 0.8 5.0 109 chr3L 21849501 intron mub + chr3L 21849556 intron mub + chr3L 21849610 intron mub + chr3L_9_21845001 chr3L_21845001 RAL-358 791 chr3L 21875000 21875026 chr3L 21875157 21875183 6 157 0.0 0.5 0.2 5.0 183 chr3L 21875000 intron mub + chr3L 21875092 intron mub + chr3L 21875183 intron mub + chr3L_6_21875001 chr3L_21875001 RAL-358 792 chr3L 22016366 22016398 chr3L 22016481 22016512 7 115 0.5 0.5 0.5 4.7 146 chr3L 22016366 intergenic not near genes chr3L 22016439 intergenic not near genes chr3L 22016512 intergenic not near genes chr3L_7_22015001 chr3L_22015001 RAL-358 793 chr3L 22099677 22099705 chr3L 22105863 22105891 3S18 7 6186 2.0 2.0 2.0 2.3 6214 chr3L 22099677 intergenic not near genes chr3L 22102784 intergenic not near genes chr3L 22105891 intergenic not near genes chr3L_7_22100001 chr3L_22100001 RAL-358 794 chr3L 22137537 22137555 chr3L 22137613 22137632 5 77 2.5 2.5 2.5 1.4 95 chr3L 22137537 intron olf413 + chr3L 22137584 intron olf413 + chr3L 22137632 intron olf413 + chr3L_5_22135001 chr3L_22135001 RAL-358 795 chr3L 22166453 22166464 chr3L 22166531 22166542 4 78 0.5 3.0 1.8 1.4 89 chr3L 22166453 intron olf413 + chr3L 22166498 intron olf413 + chr3L 22166542 intron olf413 + chr3L_4_22165001 chr3L_22165001 RAL-358 796 chr3L 22447197 22447231 chr3L 22447288 22447321 9 91 2.5 2.0 2.2 2.8 124 chr3L 22447197 intergenic not near genes chr3L 22447259 intergenic not near genes chr3L 22447321 intergenic not near genes chr3L_9_22445001 chr3L_22445001 RAL-358 797 chr3L 22554425 22554451 chr3L 22554501 22554525 4 75 1.5 3.0 2.2 1.2 100 chr3L 22554425 intergenic not near genes chr3L 22554475 intergenic not near genes chr3L 22554525 intergenic not near genes chr3L_4_22550001 chr3L_22550001 RAL-358 798 chr3L 22555771 22555783 chr3L 22563240 22563253 blood 5 7470 4.0 1.0 2.5 1.4 7482 chr3L 22555771 intergenic not near genes chr3L 22559512 intergenic not near genes chr3L 22563253 intergenic not near genes chr3L_5_22555001 chr3L_22555001 RAL-358 799 chr3L 22569576 22569599 chr3L 22569674 22569696 5 98 1.5 2.0 1.8 1.8 120 chr3L 22569576 intergenic not near genes chr3L 22569636 intergenic not near genes chr3L 22569696 intergenic not near genes chr3L_5_22565001 chr3L_22565001 RAL-358 800 chr3L 22577616 22577648 chr3L 22582404 22582436 Doc 12 4787 1.5 0.5 1.0 6.0 4820 chr3L 22577616 intergenic not near genes chr3L 22580026 intergenic not near genes chr3L 22582436 3` UTR CG14459 - chr3L_12_22580001 chr3L_22580001 RAL-358 801 chr3L 22617198 22617215 chr3L 22624648 22624667 blood 4 7452 1.5 2.0 1.8 1.4 7469 chr3L 22617198 intron CG14459 - chr3L 22620932 intron CG14459 - chr3L 22624667 intron CG14459 - chr3L_4_22620001 chr3L_22620001 RAL-358 802 chr3L 22732466 22732492 chr3L 22732547 22732573 9 81 0.0 3.5 1.8 3.2 107 chr3L 22732466 intron CG11367 + chr3L 22732520 intron CG11367 + chr3L 22732573 intron CG11367 + chr3L_9_22730001 chr3L_22730001 RAL-358 803 chr3L 22756419 22756431 chr3L 22756496 22756508 6 77 0.5 6.0 3.2 1.4 89 chr3L 22756419 intron SPoCk + chr3L 22756464 intron SPoCk + chr3L 22756508 intron SPoCk + chr3L_6_22755001 chr3L_22755001 RAL-358 804 chr3L 22761392 22761423 chr3L 22766826 22766857 Ivk 5 5434 1.5 2.5 2.0 1.7 5465 chr3L 22761392 intron SPoCk + chr3L 22764124 intron SPoCk + chr3L 22766857 intron SPoCk + chr3L_5_22760001 chr3L_22760001 RAL-358 805 chr3L 22771635 22771666 chr3L 22771717 22771748 7 81 2.5 2.0 2.2 2.2 113 chr3L 22771635 intron SPoCk + chr3L 22771692 intron SPoCk + chr3L 22771748 intron SPoCk + chr3L_7_22770001 chr3L_22770001 RAL-358 806 chr3L 22853698 22853718 chr3L 22853784 22853803 6 86 0.5 3.0 1.8 2.1 105 chr3L 22853698 5` UTR CR43426 + chr3L 22853750 5` UTR CR43426 + chr3L 22853803 5` UTR CR43426 + chr3L_6_22850001 chr3L_22850001 RAL-358 807 chr3L 19220633 19220636 chr3L 22908066 22908066 8 3687431 8.5 5.0 6.8 1.0 3687433 chr3L 19220633 intron fz2 - chr3L 21064350 intron siz + chr3L 22908066 intergenic not near genes chr3L_8_21060001 chr3L_21060001 RAL-358 808 chr3L 19220634 19220637 chr3L 22908067 22908067 11 3687432 9.0 5.0 7.0 1.4 3687433 chr3L 19220634 intron fz2 - chr3L 21064350 intron siz + chr3L 22908067 intergenic not near genes chr3L_11_21060001 chr3L_21060001 RAL-358 809 chr3L 22935068 22935097 chr3L 22935144 22935174 4 76 4.0 3.0 3.5 0.9 106 chr3L 22935068 intergenic not near genes chr3L 22935121 intergenic not near genes chr3L 22935174 intergenic not near genes chr3L_4_22935001 chr3L_22935001 RAL-358 810 chr3L 22989862 22989886 chr3L 22996835 22996860 297 7 6974 5.5 2.0 3.8 1.5 6998 chr3L 22989862 intergenic not near genes chr3L 22993361 intergenic not near genes chr3L 22996860 intergenic not near genes chr3L_7_22990001 chr3L_22990001 RAL-358 811 chr3L 23042232 23042249 chr3L 23048984 23049002 gypsy6 6 6753 6.5 5.0 5.8 0.9 6770 chr3L 23042232 intergenic not near genes chr3L 23045617 intergenic not near genes chr3L 23049002 intergenic not near genes chr3L_6_23045001 chr3L_23045001 RAL-358 812 chr3L 23182273 23182292 chr3L 23182387 23182406 4 114 1.0 4.0 2.5 1.1 133 chr3L 23182273 intron CG34031 + chr3L 23182340 intron CG34031 + chr3L 23182406 intron CG34031 + chr3L_4_23180001 chr3L_23180001 RAL-358 813 chr3L 24012411 24012439 chr3L 24020752 24020780 roo 8 8341 0.5 1.0 0.8 4.4 8369 chr3L 24012411 intergenic not near genes chr3L 24016596 intergenic not near genes chr3L 24020780 intergenic not near genes chr3L_8_24015001 chr3L_24015001 RAL-358 814 chr3L 24168641 24168654 chr3L 24176401 24176415 ZAM 7 7761 0.5 6.0 3.2 1.7 7774 chr3L 24168641 intron Snap25 + chr3L 24172528 intron Snap25 + chr3L 24176415 intron Snap25 + chr3L_7_24170001 chr3L_24170001 RAL-358 815 chr3L 25635727 25635745 chr3L 25635999 25636017 7 272 4.0 3.5 3.8 1.5 290 chr3L 25635727 intron CG41343 - chr3L 25635872 intron CG41343 - chr3L 25636017 intron CG41343 - chr3L_7_25635001 chr3L_25635001 RAL-358 816 chr3L 23289001 23289020 chr3L 25843682 25843702 5 2554681 21.0 8.0 14.5 0.3 2554701 chr3L 23289001 intergenic not near genes chr3L 24566352 intergenic not near genes chr3L 25843702 intron CG40178 - chr3L_5_24565001 chr3L_24565001 RAL-358 817 chr3L 26008781 26008798 chr3L 26008928 26008944 7 147 0.5 1.0 0.8 3.9 163 chr3L 26008781 intron CG40178 - chr3L 26008862 intron CG40178 - chr3L 26008944 intron CG40178 - chr3L_7_26005001 chr3L_26005001 RAL-358 818 chr3L 27968969 27968975 chr3L 27972361 27972367 4 3391 6.0 21.0 13.5 0.3 3398 chr3L 27968969 exon CG17514 - chr3L 27970668 exon CG17514 - chr3L 27972367 exon CG17514 - chr3L_4_27970001 chr3L_27970001 RAL-358 819 chr3L 27967542 27967553 chr3L 27971706 27971719 4 4164 16.5 13.0 14.8 0.3 4177 chr3L 27967542 exon CG17514 - chr3L 27969630 exon CG17514 - chr3L 27971719 exon CG17514 - chr3L_4_27965001 chr3L_27965001 RAL-358 820 chr3R 1866440 1866441 chr3R 1866800 1866801 4 360 3.5 2.5 3.0 1.0 361 chr3R 1866440 intron CG42623 + chr3R 1866620 intron CG42623 + chr3R 1866801 intron CG42623 + chr3R_4_1865001 chr3R_1865001 RAL-358 821 chr3R 4105041 4105068 chr3R 4110245 4110272 copia 4 5204 0.0 0.5 0.2 3.3 5231 chr3R 4105041 intergenic not near genes chr3R 4107656 intergenic not near genes chr3R 4110272 intergenic not near genes chr3R_4_4105001 chr3R_4105001 RAL-358 822 chr3R 4161537 4161564 chr3R 4161614 4161640 6 77 0.5 1.0 0.8 3.3 103 chr3R 4161537 3` UTR CG40198 - chr3R 4161588 3` UTR CG40198 - chr3R 4161640 exon CG40198 - chr3R_6_4160001 chr3R_4160001 RAL-358 823 chr3R 4366767 4366777 chr3R 4375150 4375160 roo 4 8383 3.5 2.0 2.8 1.1 8393 chr3R 4366767 3` UTR CG1090 + chr3R 4370964 intergenic not near genes chr3R 4375160 5` UTR CR44922 + chr3R_4_4370001 chr3R_4370001 RAL-358 824 chr3R 4609546 4609581 chr3R 4610710 4610745 1360 7 1164 0.5 0.0 0.2 5.8 1199 chr3R 4609546 intergenic not near genes chr3R 4610146 intergenic not near genes chr3R 4610745 intergenic not near genes chr3R_7_4610001 chr3R_4610001 RAL-358 825 chr3R 4753239 4753270 chr3R 4757542 4757573 F-element 6 4303 1.0 1.0 1.0 3.0 4334 chr3R 4753239 intron,intron atms +,CG44098 - chr3R 4755406 intron,intron atms +,CG44098 - chr3R 4757573 intron,exon atms +,CG44098 - chr3R_6_4755001 chr3R_4755001 RAL-358 826 chr3R 4769160 4769187 chr3R 4769238 4769265 9 77 3.5 1.5 2.5 2.6 105 chr3R 4769160 intron,intron atms +,CG44098 - chr3R 4769212 intron,intron atms +,CG44098 - chr3R 4769265 intron,intron atms +,CG44098 - chr3R_9_4765001 chr3R_4765001 RAL-358 827 chr3R 4861570 4861595 chr3R 4861651 4861676 7 80 2.0 2.0 2.0 2.3 106 chr3R 4861570 intron opa + chr3R 4861623 intron opa + chr3R 4861676 intron opa + chr3R_7_4860001 chr3R_4860001 RAL-358 828 chr3R 4887483 4887500 chr3R 4894860 4894877 rover 4 7377 3.0 0.5 1.8 1.4 7394 chr3R 4887483 intergenic not near genes chr3R 4891180 intergenic not near genes chr3R 4894877 intergenic not near genes chr3R_4_4890001 chr3R_4890001 RAL-358 829 chr3R 4904878 4904887 chr3R 18214683 18214693 5 13309806 10.0 5.5 7.8 0.6 13309815 chr3R 4904878 intergenic not near genes chr3R 11559786 3` UTR CG10898 + chr3R 18214693 3` UTR CG7985 + chr3R_5_11555001 chr3R_11555001 RAL-358 830 chr3R 4966019 4966037 chr3R 4966111 4966129 4 91 1.0 3.0 2.0 1.3 110 chr3R 4966019 intron CG1124 + chr3R 4966074 intron CG1124 + chr3R 4966129 intron CG1124 + chr3R_4_4965001 chr3R_4965001 RAL-358 831 chr3R 5067993 5068007 chr3R 5073510 5073524 mdg3 6 5517 1.0 1.5 1.2 2.7 5531 chr3R 5067993 intergenic not near genes chr3R 5070758 intergenic not near genes chr3R 5073524 intergenic not near genes chr3R_6_5070001 chr3R_5070001 RAL-358 832 chr3R 5193913 5193926 chr3R 5194029 5194043 5 116 2.0 1.5 1.8 1.8 130 chr3R 5193913 intron cno - chr3R 5193978 intron cno - chr3R 5194043 intron cno - chr3R_5_5190001 chr3R_5190001 RAL-358 833 chr3R 5278087 5278122 chr3R 5278168 5278203 7 81 0.5 3.5 2.0 2.3 116 chr3R 5278087 intron mtd - chr3R 5278145 intron mtd - chr3R 5278203 intron mtd - chr3R_7_5275001 chr3R_5275001 RAL-358 834 chr3R 5306127 5306152 chr3R 5306213 5306239 4 86 1.0 1.0 1.0 2.0 112 chr3R 5306127 intron mtd - chr3R 5306183 intron mtd - chr3R 5306239 intron mtd - chr3R_4_5305001 chr3R_5305001 RAL-358 835 chr3R 5338397 5338413 chr3R 5343574 5343590 Rt1c 6 5177 3.5 4.0 3.8 1.2 5193 chr3R 5338397 intron mtd - chr3R 5340994 intron mtd - chr3R 5343590 intron mtd - chr3R_6_5340001 chr3R_5340001 RAL-358 836 chr3R 5385974 5386000 chr3R 5386144 5386170 8 171 3.0 0.5 1.8 2.9 196 chr3R 5385974 intron kkv - chr3R 5386072 intron kkv - chr3R 5386170 intron kkv - chr3R_8_5385001 chr3R_5385001 RAL-358 837 chr3R 5445967 5445983 chr3R 5452427 5452443 Burdock 4 6460 2.5 2.5 2.5 1.1 6476 chr3R 5445967 intron CG14669 + chr3R 5449205 intron CG14669 + chr3R 5452443 intron CG14669 + chr3R_4_5445001 chr3R_5445001 RAL-358 838 chr3R 5688780 5688799 chr3R 5688901 5688919 5 121 3.5 1.5 2.5 1.4 139 chr3R 5688780 intron plx + chr3R 5688850 intron plx + chr3R 5688919 intron plx + chr3R_5_5685001 chr3R_5685001 RAL-358 839 chr3R 5747025 5747043 chr3R 5753216 5753234 diver 9 6191 1.5 2.0 1.8 3.2 6209 chr3R 5747025 intergenic Madm + chr3R 5750130 intergenic not near genes chr3R 5753234 intergenic CG2091 - chr3R_9_5750001 chr3R_5750001 RAL-358 840 chr3R 5989338 5989360 chr3R 5989421 5989443 4 83 6.0 1.5 3.8 0.8 105 chr3R 5989338 5` UTR CR44927 + chr3R 5989390 5` UTR CR44927 + chr3R 5989443 5` UTR CR44927 + chr3R_4_5985001 chr3R_5985001 RAL-358 841 chr3R 6015970 6015995 chr3R 6024450 6024476 Tirant 5 8480 2.5 4.0 3.2 1.2 8506 chr3R 6015970 intergenic not near genes chr3R 6020223 intergenic not near genes chr3R 6024476 intergenic not near genes chr3R_5_6020001 chr3R_6020001 RAL-358 842 chr3R 6117411 6117438 chr3R 6117532 6117558 6 121 4.0 1.0 2.5 1.7 147 chr3R 6117411 intergenic not near genes chr3R 6117484 intergenic not near genes chr3R 6117558 intergenic not near genes chr3R_6_6115001 chr3R_6115001 RAL-358 843 chr3R 6158511 6158537 chr3R 6167093 6167120 Tirant 10 8583 2.0 2.0 2.0 3.3 8609 chr3R 6158511 intergenic not near genes chr3R 6162816 intergenic not near genes chr3R 6167120 intergenic CG1077 + chr3R_10_6160001 chr3R_6160001 RAL-358 844 chr3R 6206283 6206318 chr3R 6206497 6206535 BS 6 216 0.5 1.5 1.0 3.0 252 chr3R 6206283 exon Osi24 + chr3R 6206409 intron Osi24 + chr3R 6206535 intron Osi24 + chr3R_6_6205001 chr3R_6205001 RAL-358 845 chr3R 6519111 6519135 chr3R 6519219 6519243 9 108 2.0 1.5 1.8 3.2 132 chr3R 6519111 intergenic not near genes chr3R 6519177 intergenic not near genes chr3R 6519243 intergenic not near genes chr3R_9_6515001 chr3R_6515001 RAL-358 846 chr3R 6551120 6551138 chr3R 6551214 6551231 10 94 1.5 0.5 1.0 5.0 111 chr3R 6551120 intron dpr11 - chr3R 6551176 intron dpr11 - chr3R 6551231 intron dpr11 - chr3R_10_6550001 chr3R_6550001 RAL-358 847 chr3R 6561947 6561977 chr3R 6562031 6562061 6 84 2.0 3.5 2.8 1.6 114 chr3R 6561947 intron dpr11 - chr3R 6562004 intron dpr11 - chr3R 6562061 intron dpr11 - chr3R_6_6560001 chr3R_6560001 RAL-358 848 chr3R 6698005 6698017 chr3R 6698084 6698096 4 79 3.0 0.5 1.8 1.4 91 chr3R 6698005 intergenic not near genes chr3R 6698050 intergenic not near genes chr3R 6698096 intergenic not near genes chr3R_4_6695001 chr3R_6695001 RAL-358 849 chr3R 6780447 6780475 chr3R 6780530 6780558 7 83 3.5 0.0 1.8 2.5 111 chr3R 6780447 intergenic not near genes chr3R 6780502 intergenic not near genes chr3R 6780558 intergenic not near genes chr3R_7_6780001 chr3R_6780001 RAL-358 850 chr3R 6856386 6856400 chr3R 6856503 6856516 5 117 0.5 2.0 1.2 2.3 130 chr3R 6856386 intergenic not near genes chr3R 6856451 intergenic not near genes chr3R 6856516 intergenic not near genes chr3R_5_6855001 chr3R_6855001 RAL-358 851 chr3R 6862222 6862247 chr3R 6862309 6862334 6 86 2.5 1.0 1.8 2.1 112 chr3R 6862222 intergenic not near genes chr3R 6862278 intergenic not near genes chr3R 6862334 intergenic not near genes chr3R_6_6860001 chr3R_6860001 RAL-358 852 chr3R 6912114 6912130 chr3R 6912225 6912241 5 111 0.5 0.0 0.2 4.2 127 chr3R 6912114 intron Antp - chr3R 6912178 intron Antp - chr3R 6912241 intron Antp - chr3R_5_6910001 chr3R_6910001 RAL-358 853 chr3R 6923581 6923616 chr3R 6923668 6923702 6 86 1.5 0.0 0.8 3.3 121 chr3R 6923581 intron Antp - chr3R 6923642 intron Antp - chr3R 6923702 intron Antp - chr3R_6_6920001 chr3R_6920001 RAL-358 854 chr3R 6961185 6961197 chr3R 6961264 6961276 5 79 0.0 2.5 1.2 2.3 91 chr3R 6961185 intron Antp - chr3R 6961230 intron Antp - chr3R 6961276 intron Antp - chr3R_5_6960001 chr3R_6960001 RAL-358 855 chr3R 7012203 7012233 chr3R 7012281 7012311 6 78 1.0 1.5 1.2 2.7 108 chr3R 7012203 intergenic not near genes chr3R 7012257 intergenic not near genes chr3R 7012311 intergenic not near genes chr3R_6_7010001 chr3R_7010001 RAL-358 856 chr3R 7051122 7051151 chr3R 7051201 7051230 8 79 1.0 0.5 0.8 4.4 108 chr3R 7051122 intergenic not near genes chr3R 7051176 intergenic not near genes chr3R 7051230 intergenic not near genes chr3R_8_7050001 chr3R_7050001 RAL-358 857 chr3R 7103283 7103309 chr3R 7103359 7103385 6 76 0.0 2.5 1.2 2.7 102 chr3R 7103283 intron Alh - chr3R 7103334 intron Alh - chr3R 7103385 intron Alh - chr3R_6_7100001 chr3R_7100001 RAL-358 858 chr3R 7217459 7217479 chr3R 7217680 7217700 6 221 1.5 2.5 2.0 2.0 241 chr3R 7217459 intergenic CG14605 -,CG14606 - chr3R 7217580 intergenic CG14605 -,CG14606 - chr3R 7217700 3` UTR CG14605 - chr3R_6_7215001 chr3R_7215001 RAL-358 859 chr3R 7332143 7332181 chr3R 7332219 7332258 6 76 1.0 2.0 1.5 2.4 115 chr3R 7332143 intergenic CR44337 + chr3R 7332200 intergenic CR44337 + chr3R 7332258 intergenic CR44337 + chr3R_6_7330001 chr3R_7330001 RAL-358 860 chr3R 7402172 7402186 chr3R 7402277 7402292 10 106 4.0 2.5 3.2 2.4 120 chr3R 7402172 intergenic not near genes chr3R 7402232 intergenic not near genes chr3R 7402292 intergenic not near genes chr3R_10_7400001 chr3R_7400001 RAL-358 861 chr3R 7729472 7729499 chr3R 7737410 7737437 Stalker2 9 7938 1.0 6.0 3.5 2.0 7965 chr3R 7729472 intergenic not near genes chr3R 7733454 intergenic not near genes chr3R 7737437 intergenic not near genes chr3R_9_7730001 chr3R_7730001 RAL-358 862 chr3R 7775917 7775951 chr3R 7775998 7776029 5 79 2.5 4.5 3.5 1.1 112 chr3R 7775917 intergenic not near genes chr3R 7775973 intergenic not near genes chr3R 7776029 intergenic not near genes chr3R_5_7775001 chr3R_7775001 RAL-358 863 chr3R 7955935 7955952 chr3R 7956012 7956029 7 77 5.0 0.0 2.5 2.0 94 chr3R 7955935 intron dsx - chr3R 7955982 intron dsx - chr3R 7956029 intron dsx - chr3R_7_7955001 chr3R_7955001 RAL-358 864 chr3R 8090270 8090302 chr3R 8090447 8090479 8 177 0.5 0.5 0.5 5.3 209 chr3R 8090270 5` UTR CR44330 + chr3R 8090374 intergenic CR44330 + chr3R 8090479 intergenic CR44330 + chr3R_8_8090001 chr3R_8090001 RAL-358 865 chr3R 8094411 8094441 chr3R 8099716 8099746 Transpac 4 5305 1.0 3.0 2.0 1.3 5335 chr3R 8094411 intron CG7900 + chr3R 8097078 intron CG7900 + chr3R 8099746 intron CG7900 + chr3R_4_8095001 chr3R_8095001 RAL-358 866 chr3R 8101765 8101793 chr3R 8104847 8104877 G2 6 3084 1.0 1.0 1.0 3.0 3112 chr3R 8101765 exon CG7900 + chr3R 8103321 intron CG7900 + chr3R 8104877 3` UTR CG7900 + chr3R_6_8100001 chr3R_8100001 RAL-358 867 chr3R 8107389 8107416 chr3R 8107523 8107549 8 133 0.5 1.5 1.0 4.0 160 chr3R 8107389 intron puc + chr3R 8107469 intron puc + chr3R 8107549 intron puc + chr3R_8_8105001 chr3R_8105001 RAL-358 868 chr3R 8163869 8163899 chr3R 8163948 8163976 11 78 0.0 3.0 1.5 4.4 107 chr3R 8163869 intron grn - chr3R 8163922 intron grn - chr3R 8163976 intron grn - chr3R_11_8160001 chr3R_8160001 RAL-358 869 chr3R 8182657 8182685 chr3R 8182751 8182779 12 93 1.5 1.5 1.5 4.8 122 chr3R 8182657 intergenic not near genes chr3R 8182718 intergenic not near genes chr3R 8182779 intergenic not near genes chr3R_12_8180001 chr3R_8180001 RAL-358 870 chr3R 8207559 8207583 chr3R 8208402 8208428 F-element 8 844 1.5 2.5 2.0 2.7 869 chr3R 8207559 intergenic not near genes chr3R 8207994 intergenic not near genes chr3R 8208428 intergenic not near genes chr3R_8_8205001 chr3R_8205001 RAL-358 871 chr3R 8230881 8230905 chr3R 8231351 8231373 4 469 0.5 0.0 0.2 3.3 492 chr3R 8230881 3` UTR CR45551 - chr3R 8231127 3` UTR CR45551 - chr3R 8231373 3` UTR CR45551 - chr3R_4_8230001 chr3R_8230001 RAL-358 872 chr3R 8339246 8339247 chr3R 21907534 21907536 6 13568289 11.0 7.0 9.0 0.6 13568290 chr3R 8339246 intergenic not near genes chr3R 15123391 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_6_15120001 chr3R_15120001 RAL-358 873 chr3R 8431150 8431171 chr3R 8431237 8431258 4 87 3.0 3.5 3.2 1.0 108 chr3R 8431150 intron CG45263 - chr3R 8431204 intron CG45263 - chr3R 8431258 intron CG45263 - chr3R_4_8430001 chr3R_8430001 RAL-358 874 chr3R 8468172 8468199 chr3R 8468263 8468290 11 91 0.5 3.5 2.0 3.7 118 chr3R 8468172 intron CG45263 - chr3R 8468231 intron CG45263 - chr3R 8468290 intron CG45263 - chr3R_11_8465001 chr3R_8465001 RAL-358 875 chr3R 8541339 8541364 chr3R 8541420 8541444 7 81 1.0 3.0 2.0 2.3 105 chr3R 8541339 intergenic not near genes chr3R 8541392 intergenic not near genes chr3R 8541444 intergenic not near genes chr3R_7_8540001 chr3R_8540001 RAL-358 876 chr3R 8570487 8570493 chr3R 8575122 8575129 HMS-Beagle 5 4636 4.5 2.5 3.5 1.1 4642 chr3R 8570487 intergenic not near genes chr3R 8572808 intergenic not near genes chr3R 8575129 intergenic not near genes chr3R_5_8570001 chr3R_8570001 RAL-358 877 chr3R 8621539 8621550 chr3R 8621616 8621626 6 77 5.5 3.5 4.5 1.1 87 chr3R 8621539 intron 5-HT2B + chr3R 8621582 intron 5-HT2B + chr3R 8621626 intron 5-HT2B + chr3R_6_8620001 chr3R_8620001 RAL-358 878 chr3R 8707370 8707379 chr3R 8709811 8709820 jockey 4 2440 1.0 1.0 1.0 2.0 2450 chr3R 8707370 intergenic not near genes chr3R 8708595 intergenic not near genes chr3R 8709820 intergenic not near genes chr3R_4_8705001 chr3R_8705001 RAL-358 879 chr3R 8843512 8843528 chr3R 8843723 8843740 5 212 0.5 2.0 1.2 2.3 228 chr3R 8843512 intron pyd - chr3R 8843626 intron pyd - chr3R 8843740 intron pyd - chr3R_5_8840001 chr3R_8840001 RAL-358 880 chr3R 8883328 8883334 chr3R 8883408 8883414 5 80 0.0 2.5 1.2 2.3 86 chr3R 8883328 intron pyd - chr3R 8883371 intron pyd - chr3R 8883414 intron pyd - chr3R_5_8880001 chr3R_8880001 RAL-358 881 chr3R 8894886 8894892 chr3R 8896042 8896048 1360 4 1155 2.0 3.0 2.5 1.1 1162 chr3R 8894886 intron pyd - chr3R 8895467 intron pyd - chr3R 8896048 intron pyd - chr3R_4_8895001 chr3R_8895001 RAL-358 882 chr3R 9082058 9082070 chr3R 9082151 9082164 6 94 0.5 2.0 1.2 2.7 106 chr3R 9082058 intron pum - chr3R 9082111 intron pum - chr3R 9082164 intron pum - chr3R_6_9080001 chr3R_9080001 RAL-358 883 chr3R 9141169 9141185 chr3R 9141258 9141274 8 88 0.5 1.0 0.8 4.4 105 chr3R 9141169 intron pum - chr3R 9141222 intron pum - chr3R 9141274 intron pum - chr3R_8_9140001 chr3R_9140001 RAL-358 884 chr3R 9278785 9278802 chr3R 9284043 9284062 Rt1a 8 5259 0.5 1.0 0.8 4.4 5277 chr3R 9278785 intergenic not near genes chr3R 9281424 intergenic not near genes chr3R 9284062 intergenic not near genes chr3R_8_9280001 chr3R_9280001 RAL-358 885 chr3R 9314307 9314334 chr3R 9314411 9314436 8 103 1.0 0.5 0.8 4.4 129 chr3R 9314307 intron CG8861 - chr3R 9314372 intron CG8861 - chr3R 9314436 intron CG8861 - chr3R_8_9310001 chr3R_9310001 RAL-358 886 chr3R 9319574 9319595 chr3R 9320009 9320030 jockey 6 435 2.5 2.0 2.2 1.9 456 chr3R 9319574 intron CG8861 - chr3R 9319802 intron CG8861 - chr3R 9320030 intron CG8861 - chr3R_6_9315001 chr3R_9315001 RAL-358 887 chr3R 9382820 9382849 chr3R 9382945 9382974 9 125 1.5 1.5 1.5 3.6 154 chr3R 9382820 intron FER - chr3R 9382897 intron FER - chr3R 9382974 intron FER - chr3R_9_9380001 chr3R_9380001 RAL-358 888 chr3R 9611879 9611894 chr3R 9611961 9611976 4 82 1.0 0.0 0.5 2.7 97 chr3R 9611879 intron CG8312 + chr3R 9611928 intron CG8312 + chr3R 9611976 intron CG8312 + chr3R_4_9610001 chr3R_9610001 RAL-358 889 chr3R 10033856 10033886 chr3R 10033932 10033963 7 76 0.5 1.0 0.8 3.9 107 chr3R 10033856 intron Mical - chr3R 10033910 intron Mical - chr3R 10033963 intron Mical - chr3R_7_10030001 chr3R_10030001 RAL-358 890 chr3R 10073773 10073799 chr3R 10073882 10073907 6 109 0.5 0.5 0.5 4.0 134 chr3R 10073773 intergenic nerfin-2 +,CG5361 - chr3R 10073840 3` UTR CG5361 - chr3R 10073907 exon CG5361 - chr3R_6_10070001 chr3R_10070001 RAL-358 891 chr3R 10723779 10723791 chr3R 10723871 10723881 7 92 3.5 0.5 2.0 2.3 102 chr3R 10723779 intergenic not near genes chr3R 10723830 intergenic not near genes chr3R 10723881 intergenic not near genes chr3R_7_10720001 chr3R_10720001 RAL-358 892 chr3R 10727644 10727678 chr3R 10727723 10727758 10 79 0.5 1.0 0.8 5.6 114 chr3R 10727644 intergenic not near genes chr3R 10727701 intergenic not near genes chr3R 10727758 intergenic not near genes chr3R_10_10725001 chr3R_10725001 RAL-358 893 chr3R 10732323 10732336 chr3R 10733195 10733208 7 872 5.0 0.5 2.8 1.8 885 chr3R 10732323 intergenic not near genes chr3R 10732766 intergenic not near genes chr3R 10733208 intergenic not near genes chr3R_7_10730001 chr3R_10730001 RAL-358 894 chr3R 10920055 10920074 chr3R 10920133 10920152 6 78 1.5 0.5 1.0 3.0 97 chr3R 10920055 intergenic not near genes chr3R 10920104 intergenic not near genes chr3R 10920152 intergenic not near genes chr3R_6_10920001 chr3R_10920001 RAL-358 895 chr3R 10963560 10963588 chr3R 10963653 10963682 6 94 3.5 2.5 3.0 1.5 122 chr3R 10963560 intergenic not near genes chr3R 10963621 intergenic not near genes chr3R 10963682 intergenic not near genes chr3R_6_10960001 chr3R_10960001 RAL-358 896 chr3R 11085460 11085477 chr3R 11085537 11085554 7 77 0.0 0.5 0.2 5.8 94 chr3R 11085460 3` UTR CR44940 - chr3R 11085507 intergenic CR44940 - chr3R 11085554 intergenic CR44940 - chr3R_7_11085001 chr3R_11085001 RAL-358 897 chr3R 11102331 11102347 chr3R 11102412 11102427 4 80 3.0 2.0 2.5 1.1 96 chr3R 11102331 intergenic not near genes chr3R 11102379 intergenic not near genes chr3R 11102427 intergenic not near genes chr3R_4_11100001 chr3R_11100001 RAL-358 898 chr3R 11130807 11130836 chr3R 11130979 11131008 5 172 2.5 2.0 2.2 1.6 201 chr3R 11130807 intergenic not near genes chr3R 11130908 intergenic not near genes chr3R 11131008 intergenic not near genes chr3R_5_11130001 chr3R_11130001 RAL-358 899 chr3R 11144174 11144198 chr3R 11144551 11144574 7 377 1.5 1.0 1.2 3.2 400 chr3R 11144174 intergenic CheA86a - chr3R 11144374 3` UTR CheA86a - chr3R 11144574 exon CheA86a - chr3R_7_11140001 chr3R_11140001 RAL-358 900 chr3R 11184532 11184542 chr3R 11191243 11191253 9 6710 0.0 1.5 0.8 5.0 6721 chr3R 11184532 intergenic not near genes chr3R 11187892 intergenic not near genes chr3R 11191253 intergenic not near genes chr3R_9_11185001 chr3R_11185001 RAL-358 901 chr3R 11379234 11379257 chr3R 11388389 11388412 roo 5 9155 2.5 1.0 1.8 1.8 9178 chr3R 11379234 intron pros + chr3R 11383823 intron pros + chr3R 11388412 intron pros + chr3R_5_11380001 chr3R_11380001 RAL-358 902 chr3R 11476957 11476971 chr3R 11477059 11477073 4 102 1.5 1.0 1.2 1.8 116 chr3R 11476957 intergenic not near genes chr3R 11477015 intergenic not near genes chr3R 11477073 intergenic not near genes chr3R_4_11475001 chr3R_11475001 RAL-358 903 chr3R 11567799 11567812 chr3R 11567888 11567900 4 89 0.0 1.0 0.5 2.7 101 chr3R 11567799 intergenic not near genes chr3R 11567850 intergenic not near genes chr3R 11567900 intergenic not near genes chr3R_4_11565001 chr3R_11565001 RAL-358 904 chr3R 11664792 11664807 chr3R 11664884 11664899 9 92 4.5 0.5 2.5 2.6 107 chr3R 11664792 intron CG42327 + chr3R 11664846 intron CG42327 + chr3R 11664899 intron CG42327 + chr3R_9_11660001 chr3R_11660001 RAL-358 905 chr3R 11834165 11834188 chr3R 11834248 11834270 4 82 1.5 2.5 2.0 1.3 105 chr3R 11834165 intron CG6959 - chr3R 11834218 intron CG6959 - chr3R 11834270 intron CG6959 - chr3R_4_11830001 chr3R_11830001 RAL-358 906 chr3R 11840063 11840081 chr3R 11840160 11840178 5 97 0.5 0.0 0.2 4.2 115 chr3R 11840063 intron CG6959 - chr3R 11840120 intron CG6959 - chr3R 11840178 intron CG6959 - chr3R_5_11840001 chr3R_11840001 RAL-358 907 chr3R 11841075 11841094 chr3R 11846266 11846285 BS 6 5191 3.5 6.5 5.0 1.0 5210 chr3R 11841075 intron CG6959 - chr3R 11843680 intron CG6959 - chr3R 11846285 intron CG6959 - chr3R_6_11840001 chr3R_11840001 RAL-358 908 chr3R 11995001 11995015 chr3R 11995081 11995094 4 79 2.0 0.0 1.0 2.0 93 chr3R 11995001 exon Tk - chr3R 11995048 exon Tk - chr3R 11995094 exon Tk - chr3R_4_11995001 chr3R_11995001 RAL-358 909 chr3R 12022889 12022908 chr3R 12025066 12025085 pogo 9 2177 5.0 5.5 5.2 1.5 2196 chr3R 12022889 intergenic not near genes chr3R 12023987 intergenic not near genes chr3R 12025085 intergenic not near genes chr3R_9_12020001 chr3R_12020001 RAL-358 910 chr3R 12080868 12080891 chr3R 12080945 12080969 4 77 1.5 1.0 1.2 1.8 101 chr3R 12080868 intron CG14741 - chr3R 12080918 intron CG14741 - chr3R 12080969 intron CG14741 - chr3R_4_12080001 chr3R_12080001 RAL-358 911 chr3R 12097247 12097272 chr3R 12097351 12097376 6 104 1.5 2.5 2.0 2.0 129 chr3R 12097247 intron dpr17 + chr3R 12097312 intron dpr17 + chr3R 12097376 intron dpr17 + chr3R_6_12095001 chr3R_12095001 RAL-358 912 chr3R 12111901 12111919 chr3R 12111977 12111994 7 75 0.0 1.0 0.5 4.7 93 chr3R 12111901 intergenic dpr17 + chr3R 12111948 intergenic not near genes chr3R 12111994 intergenic not near genes chr3R_7_12110001 chr3R_12110001 RAL-358 913 chr3R 12125829 12125843 chr3R 12125916 12125928 5 87 1.5 1.0 1.2 2.3 99 chr3R 12125829 intron CG4702 - chr3R 12125878 intron CG4702 - chr3R 12125928 intron CG4702 - chr3R_5_12125001 chr3R_12125001 RAL-358 914 chr3R 12274046 12274064 chr3R 12274132 12274150 5 86 5.0 1.5 3.2 1.2 104 chr3R 12274046 intron svp + chr3R 12274098 intron svp + chr3R 12274150 intron svp + chr3R_5_12270001 chr3R_12270001 RAL-358 915 chr3R 12591501 12591508 chr3R 12591610 12591618 5 110 3.5 1.5 2.5 1.4 117 chr3R 12591501 intron Octbeta2R - chr3R 12591560 intron Octbeta2R - chr3R 12591618 intron Octbeta2R - chr3R_5_12590001 chr3R_12590001 RAL-358 916 chr3R 12599382 12599404 chr3R 12599465 12599486 5 83 0.5 4.5 2.5 1.4 104 chr3R 12599382 intergenic not near genes chr3R 12599434 intergenic not near genes chr3R 12599486 intergenic not near genes chr3R_5_12595001 chr3R_12595001 RAL-358 917 chr3R 12825851 12825853 chr3R 12825931 12825933 4 80 2.5 6.0 4.2 0.8 82 chr3R 12825851 intergenic not near genes chr3R 12825892 intergenic not near genes chr3R 12825933 intergenic not near genes chr3R_4_12825001 chr3R_12825001 RAL-358 918 chr3R 12866489 12866511 chr3R 12866640 12866662 4 151 4.5 2.0 3.2 1.0 173 chr3R 12866489 intergenic not near genes chr3R 12866576 intergenic not near genes chr3R 12866662 intergenic not near genes chr3R_4_12865001 chr3R_12865001 RAL-358 919 chr3R 12883802 12883821 chr3R 12883920 12883940 5 118 1.5 3.0 2.2 1.6 138 chr3R 12883802 intergenic not near genes chr3R 12883871 intergenic not near genes chr3R 12883940 intergenic not near genes chr3R_5_12880001 chr3R_12880001 RAL-358 920 chr3R 12920158 12920177 chr3R 12925361 12925380 copia 6 5202 1.0 1.5 1.2 2.7 5222 chr3R 12920158 intron beat-Vb + chr3R 12922769 intron beat-Vb + chr3R 12925380 intron beat-Vb + chr3R_6_12920001 chr3R_12920001 RAL-358 921 chr3R 12947295 12947305 chr3R 12947457 12947467 4 162 2.0 0.0 1.0 2.0 172 chr3R 12947295 intergenic not near genes chr3R 12947381 intergenic not near genes chr3R 12947467 intergenic not near genes chr3R_4_12945001 chr3R_12945001 RAL-358 922 chr3R 13075361 13075380 chr3R 13075442 13075461 7 81 2.5 0.0 1.2 3.2 100 chr3R 13075361 intron sim + chr3R 13075411 intron sim + chr3R 13075461 intron sim + chr3R_7_13075001 chr3R_13075001 RAL-358 923 chr3R 13143046 13143060 chr3R 13148622 13148636 mdg3 6 5576 2.5 4.5 3.5 1.3 5590 chr3R 13143046 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13145841 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13148636 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_6_13145001 chr3R_13145001 RAL-358 924 chr3R 13435394 13435413 chr3R 13435569 13435588 5 174 2.5 3.5 3.0 1.2 194 chr3R 13435394 intergenic yrt - chr3R 13435491 intergenic not near genes chr3R 13435588 intergenic not near genes chr3R_5_13435001 chr3R_13435001 RAL-358 925 chr3R 13598088 13598109 chr3R 13598166 13598187 6 78 2.5 3.0 2.8 1.6 99 chr3R 13598088 intergenic not near genes chr3R 13598138 intergenic not near genes chr3R 13598187 intergenic not near genes chr3R_6_13595001 chr3R_13595001 RAL-358 926 chr3R 13659726 13659843 chr3R 13659832 13659932 4 102 0.0 0.0 0.0 4.0 206 chr3R 13659726 intron Hrb87F - chr3R 13659829 intron Hrb87F - chr3R 13659932 intron Hrb87F - chr3R_4_13655001 chr3R_13655001 RAL-358 927 chr3R 13693028 13693028 chr3R 21907534 21907535 5 8214507 8.0 7.0 7.5 0.6 8214507 chr3R 13693028 3` UTR flfl + chr3R 17800282 exon CG17803 - chr3R 21907535 intergenic CG6678 + chr3R_5_17800001 chr3R_17800001 RAL-358 928 chr3R 13847497 13847529 chr3R 13847573 13847604 6 76 1.0 6.0 3.5 1.3 107 chr3R 13847497 intergenic not near genes chr3R 13847550 intergenic not near genes chr3R 13847604 intergenic not near genes chr3R_6_13845001 chr3R_13845001 RAL-358 929 chr3R 13863678 13863704 chr3R 13863766 13863791 4 88 2.5 1.5 2.0 1.3 113 chr3R 13863678 intergenic not near genes chr3R 13863734 intergenic not near genes chr3R 13863791 intergenic not near genes chr3R_4_13860001 chr3R_13860001 RAL-358 930 chr3R 14161452 14161475 chr3R 14161543 14161566 8 91 0.5 2.0 1.2 3.6 114 chr3R 14161452 intergenic not near genes chr3R 14161509 intergenic not near genes chr3R 14161566 intergenic not near genes chr3R_8_14160001 chr3R_14160001 RAL-358 931 chr3R 14180813 14180836 chr3R 14185578 14185601 F-element 4 4765 1.5 1.5 1.5 1.6 4788 chr3R 14180813 intron Dop1R1 - chr3R 14183207 intron Dop1R1 - chr3R 14185601 intron Dop1R1 - chr3R_4_14180001 chr3R_14180001 RAL-358 932 chr3R 14246403 14246418 chr3R 14247899 14247913 jockey 5 1495 1.0 3.5 2.2 1.6 1510 chr3R 14246403 intergenic not near genes chr3R 14247158 intergenic not near genes chr3R 14247913 intergenic not near genes chr3R_5_14245001 chr3R_14245001 RAL-358 933 chr3R 14364066 14364070 chr3R 14364142 14364146 4 76 6.5 1.5 4.0 0.8 80 chr3R 14364066 intron NK7.1 - chr3R 14364106 intron NK7.1 - chr3R 14364146 intron NK7.1 - chr3R_4_14360001 chr3R_14360001 RAL-358 934 chr3R 14497405 14497426 chr3R 14497486 14497507 5 81 0.5 0.0 0.2 4.2 102 chr3R 14497405 intron CR44177 + chr3R 14497456 intron CR44177 + chr3R 14497507 intron CR44177 + chr3R_5_14495001 chr3R_14495001 RAL-358 935 chr3R 14556584 14556610 chr3R 14556675 14556701 6 91 1.0 0.5 0.8 3.3 117 chr3R 14556584 intron Pde6 - chr3R 14556642 intron Pde6 - chr3R 14556701 intron Pde6 - chr3R_6_14555001 chr3R_14555001 RAL-358 936 chr3R 14565793 14565824 chr3R 14565875 14565906 11 81 1.5 2.0 1.8 3.9 113 chr3R 14565793 intergenic CG14852 + chr3R 14565850 intergenic CG14852 + chr3R 14565906 intergenic CG14852 + chr3R_11_14565001 chr3R_14565001 RAL-358 937 chr3R 14682877 14682881 chr3R 14682966 14682971 5 90 1.0 0.0 0.5 3.3 94 chr3R 14682877 intron Meltrin - chr3R 14682924 intron Meltrin - chr3R 14682971 intron Meltrin - chr3R_5_14680001 chr3R_14680001 RAL-358 938 chr3R 14704393 14704406 chr3R 14704470 14704483 9 77 2.5 1.0 1.8 3.2 90 chr3R 14704393 intron kibra - chr3R 14704438 intron kibra - chr3R 14704483 intron kibra - chr3R_9_14700001 chr3R_14700001 RAL-358 939 chr3R 14963232 14963249 chr3R 14963308 14963326 7 77 1.0 1.5 1.2 3.2 94 chr3R 14963232 intergenic not near genes chr3R 14963279 intergenic not near genes chr3R 14963326 intergenic not near genes chr3R_7_14960001 chr3R_14960001 RAL-358 940 chr3R 15002381 15002408 chr3R 15002480 15002507 12 99 2.5 2.0 2.2 3.8 126 chr3R 15002381 intergenic not near genes chr3R 15002444 intergenic not near genes chr3R 15002507 intergenic not near genes chr3R_12_15000001 chr3R_15000001 RAL-358 941 chr3R 15020032 15020058 chr3R 15020112 15020138 10 80 3.5 5.5 4.5 1.8 106 chr3R 15020032 intergenic not near genes chr3R 15020085 intergenic not near genes chr3R 15020138 intergenic not near genes chr3R_10_15020001 chr3R_15020001 RAL-358 942 chr3R 15079808 15079828 chr3R 15080048 15080069 pogo 5 241 2.0 0.0 1.0 2.5 261 chr3R 15079808 3` UTR CG6966 - chr3R 15079938 3` UTR CG6966 - chr3R 15080069 3` UTR CG6966 - chr3R_5_15075001 chr3R_15075001 RAL-358 943 chr3R 15156619 15156633 chr3R 15156700 15156714 6 81 0.5 0.0 0.2 5.0 95 chr3R 15156619 intron Gyc88E + chr3R 15156666 intron Gyc88E + chr3R 15156714 intron Gyc88E + chr3R_6_15155001 chr3R_15155001 RAL-358 944 chr3R 15158541 15158553 chr3R 15158699 15158710 5 156 1.5 1.5 1.5 2.0 169 chr3R 15158541 intron Gyc88E + chr3R 15158626 intron Gyc88E + chr3R 15158710 intron Gyc88E + chr3R_5_15155001 chr3R_15155001 RAL-358 945 chr3R 15162551 15162577 chr3R 15167318 15167344 F-element 4 4767 2.0 1.5 1.8 1.4 4793 chr3R 15162551 intron Gyc88E + chr3R 15164948 intron Gyc88E + chr3R 15167344 intron Gyc88E + chr3R_4_15160001 chr3R_15160001 RAL-358 946 chr3R 15416249 15416282 chr3R 15416329 15416362 12 80 0.5 0.0 0.2 10.0 113 chr3R 15416249 3` UTR Atx2 + chr3R 15416306 3` UTR Atx2 + chr3R 15416362 3` UTR Atx2 + chr3R_12_15415001 chr3R_15415001 RAL-358 947 chr3R 15594655 15594671 chr3R 15594736 15594754 4 82 0.0 3.0 1.5 1.6 99 chr3R 15594655 intergenic not near genes chr3R 15594704 intergenic not near genes chr3R 15594754 intergenic not near genes chr3R_4_15590001 chr3R_15590001 RAL-358 948 chr3R 15618733 15618752 chr3R 15626207 15626226 blood 15 7474 2.0 1.5 1.8 5.4 7493 chr3R 15618733 intergenic not near genes chr3R 15622480 intergenic not near genes chr3R 15626226 intergenic not near genes chr3R_15_15620001 chr3R_15620001 RAL-358 949 chr3R 15924306 15924339 chr3R 15924436 15924469 8 130 0.5 0.5 0.5 5.3 163 chr3R 15924306 intron CG4221 + chr3R 15924388 intron CG4221 + chr3R 15924469 intron CG4221 + chr3R_8_15920001 chr3R_15920001 RAL-358 950 chr3R 15937433 15937442 chr3R 15937520 15937527 6 86 3.5 4.5 4.0 1.2 94 chr3R 15937433 intron Sap47 + chr3R 15937480 intron Sap47 + chr3R 15937527 intron Sap47 + chr3R_6_15935001 chr3R_15935001 RAL-358 951 chr3R 15950302 15950325 chr3R 15950419 15950441 7 117 2.0 0.5 1.2 3.2 139 chr3R 15950302 intron,exon Sap47 +,CG31088 - chr3R 15950372 intron,exon Sap47 +,CG31088 - chr3R 15950441 intron,exon Sap47 +,CG31088 - chr3R_7_15950001 chr3R_15950001 RAL-358 952 chr3R 16023859 16023891 chr3R 16023936 16023967 4 76 0.0 0.5 0.2 3.3 108 chr3R 16023859 intergenic not near genes chr3R 16023913 intergenic not near genes chr3R 16023967 intergenic not near genes chr3R_4_16020001 chr3R_16020001 RAL-358 953 chr3R 16335410 16335424 chr3R 16335584 16335598 6 174 1.5 4.0 2.8 1.6 188 chr3R 16335410 intron Sulf1 - chr3R 16335504 intron Sulf1 - chr3R 16335598 intron Sulf1 - chr3R_6_16335001 chr3R_16335001 RAL-358 954 chr3R 16374293 16374331 chr3R 16374410 16374448 7 117 1.5 1.0 1.2 3.2 155 chr3R 16374293 intergenic ss - chr3R 16374370 intergenic ss - chr3R 16374448 3` UTR ss - chr3R_7_16370001 chr3R_16370001 RAL-358 955 chr3R 16849717 16849741 chr3R 16849820 16849844 7 103 0.0 1.0 0.5 4.7 127 chr3R 16849717 intron iab-8 - chr3R 16849780 intron iab-8 - chr3R 16849844 intron iab-8 - chr3R_7_16845001 chr3R_16845001 RAL-358 956 chr3R 16860341 16860369 chr3R 16860418 16860447 13 78 0.5 0.0 0.2 10.8 106 chr3R 16860341 intron iab-8 - chr3R 16860394 intron iab-8 - chr3R 16860447 intron iab-8 - chr3R_13_16860001 chr3R_16860001 RAL-358 957 chr3R 16897722 16897740 chr3R 16897801 16897815 5 78 2.0 0.5 1.2 2.3 93 chr3R 16897722 intron,5` UTR iab-8 -,CR43617 + chr3R 16897768 intron,5` UTR iab-8 -,CR43617 + chr3R 16897815 intron,5` UTR iab-8 -,CR43617 + chr3R_5_16895001 chr3R_16895001 RAL-358 958 chr3R 16934536 16934551 chr3R 16934630 16934645 5 94 1.0 2.0 1.5 2.0 109 chr3R 16934536 intron Abd-B - chr3R 16934590 intron Abd-B - chr3R 16934645 intron Abd-B - chr3R_5_16930001 chr3R_16930001 RAL-358 959 chr3R 17021503 17021532 chr3R 17021983 17022011 4 479 0.5 2.5 1.5 1.6 508 chr3R 17021503 intron Pxd + chr3R 17021757 intron Pxd + chr3R 17022011 intron Pxd + chr3R_4_17020001 chr3R_17020001 RAL-358 960 chr3R 17175948 17175978 chr3R 17176025 17176057 4 78 1.0 2.5 1.8 1.4 109 chr3R 17175948 intron Mur89F - chr3R 17176002 intron Mur89F - chr3R 17176057 intron Mur89F - chr3R_4_17175001 chr3R_17175001 RAL-358 961 chr3R 17432827 17432853 chr3R 17433007 17433033 7 178 1.0 3.5 2.2 2.2 206 chr3R 17432827 intron CG5873 + chr3R 17432930 intron CG5873 + chr3R 17433033 intron CG5873 + chr3R_7_17430001 chr3R_17430001 RAL-358 962 chr3R 17461213 17461219 chr3R 17461295 17461301 8 82 0.5 4.0 2.2 2.5 88 chr3R 17461213 intergenic not near genes chr3R 17461257 intergenic not near genes chr3R 17461301 intergenic not near genes chr3R_8_17460001 chr3R_17460001 RAL-358 963 chr3R 17522214 17522230 chr3R 17522307 17522322 7 93 1.0 0.0 0.5 4.7 108 chr3R 17522214 intergenic not near genes chr3R 17522268 intergenic not near genes chr3R 17522322 intergenic not near genes chr3R_7_17520001 chr3R_17520001 RAL-358 964 chr3R 17531905 17531914 chr3R 17531982 17531991 6 77 1.5 6.0 3.8 1.2 86 chr3R 17531905 intergenic CG5823 - chr3R 17531948 intergenic CG5823 - chr3R 17531991 intergenic CG5823 - chr3R_6_17530001 chr3R_17530001 RAL-358 965 chr3R 17591294 17591321 chr3R 17591729 17591757 F-element 6 436 2.0 0.5 1.2 2.7 463 chr3R 17591294 intergenic not near genes chr3R 17591526 intergenic not near genes chr3R 17591757 intergenic not near genes chr3R_6_17590001 chr3R_17590001 RAL-358 966 chr3R 17743221 17743236 chr3R 17743302 17743317 4 81 0.0 2.5 1.2 1.8 96 chr3R 17743221 intron TyrRII + chr3R 17743269 intron TyrRII + chr3R 17743317 intron TyrRII + chr3R_4_17740001 chr3R_17740001 RAL-358 967 chr3R 17823208 17823225 chr3R 17823293 17823310 5 85 0.5 0.5 0.5 3.3 102 chr3R 17823208 intron tinc + chr3R 17823259 intron tinc + chr3R 17823310 intron tinc + chr3R_5_17820001 chr3R_17820001 RAL-358 968 chr3R 17899091 17899106 chr3R 17899169 17899183 5 78 2.0 0.5 1.2 2.3 92 chr3R 17899091 intron Rim - chr3R 17899137 intron Rim - chr3R 17899183 intron Rim - chr3R_5_17895001 chr3R_17895001 RAL-358 969 chr3R 17925852 17925873 chr3R 17927319 17927338 hobo 7 1467 3.0 4.0 3.5 1.6 1486 chr3R 17925852 intron cpo + chr3R 17926595 intron cpo + chr3R 17927338 intron cpo + chr3R_7_17925001 chr3R_17925001 RAL-358 970 chr3R 18112371 18112379 chr3R 18112454 18112462 4 83 1.0 2.5 1.8 1.4 91 chr3R 18112371 intron sr + chr3R 18112416 intron sr + chr3R 18112462 intron sr + chr3R_4_18110001 chr3R_18110001 RAL-358 971 chr3R 18528378 18528386 chr3R 18528465 18528473 7 87 1.0 2.5 1.8 2.5 95 chr3R 18528378 intron fru - chr3R 18528426 intron fru - chr3R 18528473 intron fru - chr3R_7_18525001 chr3R_18525001 RAL-358 972 chr3R 18606511 18606534 chr3R 18610743 18610766 F-element 7 4232 2.0 1.5 1.8 2.5 4255 chr3R 18606511 intron,intron qin +,CG14304 - chr3R 18608638 intron,intron qin +,CG14304 - chr3R 18610766 intron,intron qin +,CG14304 - chr3R_7_18605001 chr3R_18605001 RAL-358 973 chr3R 18617715 18617741 chr3R 18617795 18617821 4 80 0.0 0.5 0.2 3.3 106 chr3R 18617715 intron,intron qin +,CG14304 - chr3R 18617768 intron,intron qin +,CG14304 - chr3R 18617821 intron,intron qin +,CG14304 - chr3R_4_18615001 chr3R_18615001 RAL-358 974 chr3R 18618268 18618295 chr3R 18618353 18618380 5 85 2.0 0.5 1.2 2.3 112 chr3R 18618268 intron,intron qin +,CG14304 - chr3R 18618324 intron,intron qin +,CG14304 - chr3R 18618380 intron,intron qin +,CG14304 - chr3R_5_18615001 chr3R_18615001 RAL-358 975 chr3R 18670381 18670410 chr3R 18670474 18670503 8 93 1.0 2.0 1.5 3.2 122 chr3R 18670381 intron CG7702 + chr3R 18670442 intron CG7702 + chr3R 18670503 intron CG7702 + chr3R_8_18670001 chr3R_18670001 RAL-358 976 chr3R 18730024 18730038 chr3R 18730100 18730114 4 76 1.0 1.0 1.0 2.0 90 chr3R 18730024 intron Cha + chr3R 18730069 intron Cha + chr3R 18730114 exon Cha + chr3R_4_18730001 chr3R_18730001 RAL-358 977 chr3R 18781705 18781727 chr3R 18781781 18781803 6 76 0.0 0.5 0.2 5.0 98 chr3R 18781705 intron CG7720 - chr3R 18781754 intron CG7720 - chr3R 18781803 intron CG7720 - chr3R_6_18780001 chr3R_18780001 RAL-358 978 chr3R 18812082 18812107 chr3R 18812159 18812185 6 78 1.0 5.0 3.0 1.5 103 chr3R 18812082 intron CG18208 - chr3R 18812134 intron CG18208 - chr3R 18812185 intron CG18208 - chr3R_6_18810001 chr3R_18810001 RAL-358 979 chr3R 18817508 18817536 chr3R 18817606 18817634 5 98 0.0 0.0 0.0 5.0 126 chr3R 18817508 intron CG18208 - chr3R 18817571 intron CG18208 - chr3R 18817634 intron CG18208 - chr3R_5_18815001 chr3R_18815001 RAL-358 980 chr3R 18888829 18888862 chr3R 18889164 18889197 14 334 1.5 4.5 3.0 3.5 368 chr3R 18888829 intergenic not near genes chr3R 18889013 intergenic not near genes chr3R 18889197 intergenic not near genes chr3R_14_18885001 chr3R_18885001 RAL-358 981 chr3R 18932564 18932577 chr3R 18932739 18932752 7 174 4.5 0.0 2.2 2.2 188 chr3R 18932564 intron CG42613 + chr3R 18932658 intron CG42613 + chr3R 18932752 intron CG42613 + chr3R_7_18930001 chr3R_18930001 RAL-358 982 chr3R 19109221 19109252 chr3R 19109333 19109364 7 112 0.0 0.0 0.0 7.0 143 chr3R 19109221 intron CG6040 + chr3R 19109292 intron CG6040 + chr3R 19109364 intron CG6040 + chr3R_7_19105001 chr3R_19105001 RAL-358 983 chr3R 19435523 19435544 chr3R 19435799 19435820 9 276 2.0 5.0 3.5 2.0 297 chr3R 19435523 intron CG31221 + chr3R 19435672 intron CG31221 + chr3R 19435820 intron CG31221 + chr3R_9_19435001 chr3R_19435001 RAL-358 984 chr3R 19466174 19466179 chr3R 19468013 19468018 4 1839 8.5 6.0 7.2 0.5 1844 chr3R 19466174 intron Dys + chr3R 19467096 intron Dys + chr3R 19468018 intron Dys + chr3R_4_19465001 chr3R_19465001 RAL-358 985 chr3R 19502208 19502224 chr3R 19502283 19502301 8 77 1.0 2.0 1.5 3.2 93 chr3R 19502208 intron Dys + chr3R 19502254 intron Dys + chr3R 19502301 intron Dys + chr3R_8_19500001 chr3R_19500001 RAL-358 986 chr3R 19532214 19532241 chr3R 19532290 19532317 8 76 0.5 1.5 1.0 4.0 103 chr3R 19532214 intron Dys + chr3R 19532266 intron Dys + chr3R 19532317 intron Dys + chr3R_8_19530001 chr3R_19530001 RAL-358 987 chr3R 19716216 19716246 chr3R 19716293 19716323 5 77 0.0 0.0 0.0 5.0 107 chr3R 19716216 intergenic CG34286 - chr3R 19716270 intergenic CG34286 - chr3R 19716323 intergenic CG34286 - chr3R_5_19715001 chr3R_19715001 RAL-358 988 chr3R 19824507 19824542 chr3R 19824599 19824636 7 93 0.5 2.0 1.2 3.2 129 chr3R 19824507 intron bnl - chr3R 19824572 intron bnl - chr3R 19824636 intron bnl - chr3R_7_19820001 chr3R_19820001 RAL-358 989 chr3R 19908274 19908305 chr3R 19908357 19908389 4 84 0.0 0.0 0.0 4.0 115 chr3R 19908274 intron RhoGAP92B + chr3R 19908332 intron RhoGAP92B + chr3R 19908389 intron RhoGAP92B + chr3R_4_19905001 chr3R_19905001 RAL-358 990 chr3R 19943880 19943899 chr3R 19943960 19943979 6 79 2.5 0.0 1.2 2.7 99 chr3R 19943880 intron Hs6st - chr3R 19943930 intron Hs6st - chr3R 19943979 intron Hs6st - chr3R_6_19940001 chr3R_19940001 RAL-358 991 chr3R 19950036 19950064 chr3R 19950114 19950142 7 78 0.5 0.5 0.5 4.7 106 chr3R 19950036 intron Hs6st - chr3R 19950089 intron Hs6st - chr3R 19950142 intron Hs6st - chr3R_7_19950001 chr3R_19950001 RAL-358 992 chr3R 20060642 20060657 chr3R 20060725 20060740 5 83 2.5 2.0 2.2 1.6 98 chr3R 20060642 intergenic not near genes chr3R 20060691 intergenic not near genes chr3R 20060740 intergenic not near genes chr3R_5_20060001 chr3R_20060001 RAL-358 993 chr3R 20109540 20109571 chr3R 20114746 20114777 copia 5 5206 0.5 1.0 0.8 2.8 5237 chr3R 20109540 intergenic not near genes chr3R 20112158 intergenic not near genes chr3R 20114777 intergenic CG10887 + chr3R_5_20110001 chr3R_20110001 RAL-358 994 chr3R 20124566 20124597 chr3R 20124653 20124682 10 86 3.0 1.0 2.0 3.3 116 chr3R 20124566 intergenic not near genes chr3R 20124624 intergenic not near genes chr3R 20124682 intergenic not near genes chr3R_10_20120001 chr3R_20120001 RAL-358 995 chr3R 20137191 20137200 chr3R 20137318 20137327 4 125 4.0 0.5 2.2 1.2 136 chr3R 20137191 intergenic not near genes chr3R 20137259 intergenic not near genes chr3R 20137327 intergenic not near genes chr3R_4_20135001 chr3R_20135001 RAL-358 996 chr3R 20149596 20149622 chr3R 20151716 20151742 6 2121 8.5 17.5 13.0 0.4 2146 chr3R 20149596 intergenic not near genes chr3R 20150669 intergenic not near genes chr3R 20151742 intergenic not near genes chr3R_6_20150001 chr3R_20150001 RAL-358 997 chr3R 20195693 20195718 chr3R 20195767 20195794 6 76 0.0 1.0 0.5 4.0 101 chr3R 20195693 intergenic not near genes chr3R 20195744 intergenic not near genes chr3R 20195794 intergenic not near genes chr3R_6_20195001 chr3R_20195001 RAL-358 998 chr3R 20330996 20331030 chr3R 20331482 20331516 roo 10 486 1.0 0.5 0.8 5.6 520 chr3R 20330996 intergenic Sirt2 + chr3R 20331256 intergenic Sirt2 + chr3R 20331516 intergenic not near genes chr3R_10_20330001 chr3R_20330001 RAL-358 999 chr3R 20406504 20406512 chr3R 20406603 20406611 5 99 1.0 0.0 0.5 3.3 107 chr3R 20406504 intron Gfrl - chr3R 20406558 intron Gfrl - chr3R 20406611 intron Gfrl - chr3R_5_20405001 chr3R_20405001 RAL-358 1000 chr3R 20595605 20595635 chr3R 20595815 20595845 9 210 0.0 4.0 2.0 3.0 240 chr3R 20595605 intron bon + chr3R 20595725 intron bon + chr3R 20595845 intron bon + chr3R_9_20595001 chr3R_20595001 RAL-358 1001 chr3R 20606012 20606024 chr3R 20613131 20613143 7 7119 6.5 3.5 5.0 1.2 7131 chr3R 20606012 intron bon + chr3R 20609578 intron bon + chr3R 20613143 intron CG15923 - chr3R_7_20605001 chr3R_20605001 RAL-358 1002 chr3R 20703480 20703499 chr3R 20703874 20703893 10 394 1.0 1.0 1.0 5.0 413 chr3R 20703480 intron Oamb - chr3R 20703686 intron Oamb - chr3R 20703893 intron Oamb - chr3R_10_20700001 chr3R_20700001 RAL-358 1003 chr3R 20707753 20707773 chr3R 20707967 20707986 5 214 1.0 2.0 1.5 2.0 233 chr3R 20707753 intron Oamb - chr3R 20707870 intron Oamb - chr3R 20707986 intron Oamb - chr3R_5_20705001 chr3R_20705001 RAL-358 1004 chr3R 20722859 20722887 chr3R 20722985 20723014 7 127 0.5 2.0 1.2 3.2 155 chr3R 20722859 intergenic not near genes chr3R 20722936 intergenic not near genes chr3R 20723014 intergenic not near genes chr3R_7_20720001 chr3R_20720001 RAL-358 1005 chr3R 20735043 20735046 chr3R 20735129 20735130 6 85 0.5 4.5 2.5 1.7 87 chr3R 20735043 intergenic not near genes chr3R 20735086 intergenic not near genes chr3R 20735130 intergenic cdc2c + chr3R_6_20735001 chr3R_20735001 RAL-358 1006 chr3R 20787437 20787451 chr3R 20787528 20787542 7 91 2.0 0.5 1.2 3.2 105 chr3R 20787437 intron Syp + chr3R 20787490 intron Syp + chr3R 20787542 intron Syp + chr3R_7_20785001 chr3R_20785001 RAL-358 1007 chr3R 20794877 20794909 chr3R 20794962 20794996 6 86 0.5 0.0 0.2 5.0 119 chr3R 20794877 intron Syp + chr3R 20794936 intron Syp + chr3R 20794996 intron Syp + chr3R_6_20790001 chr3R_20790001 RAL-358 1008 chr3R 20824820 20824854 chr3R 20824896 20824930 6 76 0.5 1.0 0.8 3.3 110 chr3R 20824820 3` UTR AdSS - chr3R 20824875 3` UTR AdSS - chr3R 20824930 3` UTR AdSS - chr3R_6_20820001 chr3R_20820001 RAL-358 1009 chr3R 20874524 20874539 chr3R 20874609 20874622 6 84 2.0 1.5 1.8 2.1 98 chr3R 20874524 intergenic TotB + chr3R 20874573 intergenic TotB + chr3R 20874622 intergenic TotB + chr3R_6_20870001 chr3R_20870001 RAL-358 1010 chr3R 21014016 21014043 chr3R 21014091 21014121 6 77 0.0 2.0 1.0 3.0 105 chr3R 21014016 3` UTR Calx + chr3R 21014068 3` UTR Calx + chr3R 21014121 3` UTR Calx + chr3R_6_21010001 chr3R_21010001 RAL-358 1011 chr3R 21141680 21141692 chr3R 21150161 21150173 Tirant 4 8481 2.5 0.5 1.5 1.6 8493 chr3R 21141680 intron SNF4Agamma + chr3R 21145926 intron SNF4Agamma + chr3R 21150173 intron SNF4Agamma + chr3R_4_21145001 chr3R_21145001 RAL-358 1012 chr3R 21186033 21186059 chr3R 21186133 21186159 4 100 0.5 0.0 0.2 3.3 126 chr3R 21186033 intron SNF4Agamma + chr3R 21186096 intron SNF4Agamma + chr3R 21186159 intron SNF4Agamma + chr3R_4_21185001 chr3R_21185001 RAL-358 1013 chr3R 21330823 21330831 chr3R 21330913 21330921 4 90 1.5 8.0 4.8 0.7 98 chr3R 21330823 intron CG16791 - chr3R 21330872 intron CG16791 - chr3R 21330921 intron CG16791 - chr3R_4_21330001 chr3R_21330001 RAL-358 1014 chr3R 21494678 21494708 chr3R 21494758 21494788 8 80 3.0 0.0 1.5 3.2 110 chr3R 21494678 intergenic not near genes chr3R 21494733 intergenic not near genes chr3R 21494788 intergenic not near genes chr3R_8_21490001 chr3R_21490001 RAL-358 1015 chr3R 21505221 21505250 chr3R 21505303 21505332 6 81 0.0 2.0 1.0 3.0 111 chr3R 21505221 intron C15 + chr3R 21505276 intron C15 + chr3R 21505332 intron C15 + chr3R_6_21505001 chr3R_21505001 RAL-358 1016 chr3R 21520000 21520137 chr3R 21520101 21520229 4 97 0.0 0.0 0.0 4.0 229 chr3R 21520000 intergenic not near genes chr3R 21520114 intergenic not near genes chr3R 21520229 intergenic not near genes chr3R_4_21520001 chr3R_21520001 RAL-358 1017 chr3R 11860922 11860935 chr3R 21632581 21632593 4 9771658 10.0 9.0 9.5 0.4 9771671 chr3R 11860922 intron CG6959 - chr3R 16746758 intron bxd - chr3R 21632593 intron E2f - chr3R_4_16745001 chr3R_16745001 RAL-358 1018 chr3R 21652551 21652566 chr3R 21652631 21652645 7 80 1.0 2.0 1.5 2.8 94 chr3R 21652551 intron E2f - chr3R 21652598 intron E2f - chr3R 21652645 intron E2f - chr3R_7_21650001 chr3R_21650001 RAL-358 1019 chr3R 21790960 21790983 chr3R 21791044 21791068 8 85 1.5 0.5 1.0 4.0 108 chr3R 21790960 intron CASK - chr3R 21791014 intron CASK - chr3R 21791068 intron CASK - chr3R_8_21790001 chr3R_21790001 RAL-358 1020 chr3R 21794454 21794477 chr3R 21794543 21794567 6 90 4.0 3.5 3.8 1.2 113 chr3R 21794454 intron CASK - chr3R 21794510 intron CASK - chr3R 21794567 intron CASK - chr3R_6_21790001 chr3R_21790001 RAL-358 1021 chr3R 17389054 17389054 chr3R 21907534 21907534 4 4518480 3.0 7.0 5.0 0.7 4518480 chr3R 17389054 intron,3` UTR Brf -,lute + chr3R 19648294 5` UTR CG6195 - chr3R 21907534 intergenic CG6678 + chr3R_4_19645001 chr3R_19645001 RAL-358 1022 chr3R 21907534 21907534 chr3R 28831801 28831804 7 6924268 6.5 10.5 8.5 0.7 6924270 chr3R 21907534 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831804 intron WASp - chr3R_7_25365001 chr3R_25365001 RAL-358 1023 chr3R 8339247 8339247 chr3R 21907535 21907535 6 13568288 11.0 7.0 9.0 0.6 13568288 chr3R 8339247 intergenic not near genes chr3R 15123391 intron CG42788 - chr3R 21907535 intergenic CG6678 + chr3R_6_15120001 chr3R_15120001 RAL-358 1024 chr3R 21907535 21907535 chr3R 28831801 28831804 52 6924266 6.5 10.5 8.5 5.5 6924269 chr3R 21907535 intergenic CG6678 + chr3R 25369670 intron Fur1 - chr3R 28831804 intron WASp - chr3R_52_25365001 chr3R_25365001 RAL-358 1025 chr3R 21907536 21907536 chr3R 28831801 28831803 45 6924266 6.5 10.5 8.5 4.7 6924267 chr3R 21907536 intergenic CG6678 + chr3R 25369670 intron Fur1 - chr3R 28831803 intron WASp - chr3R_45_25365001 chr3R_25365001 RAL-358 1026 chr3R 21907536 21907536 chr3R 29013339 29013340 5 7105804 6.5 9.5 8.0 0.6 7105804 chr3R 21907536 intergenic CG6678 + chr3R 25460438 intron Fur1 - chr3R 29013340 intron wat - chr3R_5_25460001 chr3R_25460001 RAL-358 1027 chr3R 21952139 21952160 chr3R 21952224 21952245 7 85 1.5 2.0 1.8 2.5 106 chr3R 21952139 intron Eip93F + chr3R 21952192 intron Eip93F + chr3R 21952245 intron Eip93F + chr3R_7_21950001 chr3R_21950001 RAL-358 1028 chr3R 22117420 22117447 chr3R 22117496 22117523 9 76 1.0 3.0 2.0 3.0 103 chr3R 22117420 intergenic Ir94b -,Ir94c - chr3R 22117472 intergenic Ir94c -,Ir94b - chr3R 22117523 intergenic Ir94c -,Ir94b - chr3R_9_22115001 chr3R_22115001 RAL-358 1029 chr3R 22234685 22234715 chr3R 22236003 22236034 pogo 6 1319 1.0 3.0 2.0 2.0 1349 chr3R 22234685 intron SKIP + chr3R 22235360 intron SKIP + chr3R 22236034 intron SKIP + chr3R_6_22235001 chr3R_22235001 RAL-358 1030 chr3R 22239498 22239523 chr3R 22248558 22248583 roo 7 9060 1.0 1.5 1.2 3.2 9085 chr3R 22239498 intron SKIP + chr3R 22244040 intron SKIP + chr3R 22248583 intron SKIP + chr3R_7_22240001 chr3R_22240001 RAL-358 1031 chr3R 22428576 22428605 chr3R 22428652 22428680 7 76 4.5 1.5 3.0 1.8 104 chr3R 22428576 intron CG13847 - chr3R 22428628 intron CG13847 - chr3R 22428680 intron CG13847 - chr3R_7_22425001 chr3R_22425001 RAL-358 1032 chr3R 22450542 22450564 chr3R 22453182 22453204 NOF 8 2640 4.5 1.0 2.8 2.1 2662 chr3R 22450542 intron CG34376 + chr3R 22451873 intron CG34376 + chr3R 22453204 intron CG34376 + chr3R_8_22450001 chr3R_22450001 RAL-358 1033 chr3R 22538445 22538469 chr3R 22538528 22538554 4 84 1.5 2.0 1.8 1.4 109 chr3R 22538445 intron CG5326 - chr3R 22538500 intron CG5326 - chr3R 22538554 intron CG5326 - chr3R_4_22535001 chr3R_22535001 RAL-358 1034 chr3R 22646922 22646945 chr3R 22647010 22647033 6 88 2.5 0.0 1.2 2.7 111 chr3R 22646922 intron wake + chr3R 22646978 intron wake + chr3R 22647033 intron wake + chr3R_6_22645001 chr3R_22645001 RAL-358 1035 chr3R 22769095 22769121 chr3R 22769172 22769198 7 77 1.0 4.0 2.5 2.0 103 chr3R 22769095 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769146 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769198 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R_7_22765001 chr3R_22765001 RAL-358 1036 chr3R 22797758 22797935 chr3R 22797844 22798031 11 89 0.0 0.0 0.0 11.0 273 chr3R 22797758 intergenic not near genes chr3R 22797894 intergenic not near genes chr3R 22798031 intergenic not near genes chr3R_11_22795001 chr3R_22795001 RAL-358 1037 chr3R 22860157 22860169 chr3R 22860249 22860261 5 92 0.5 0.5 0.5 3.3 104 chr3R 22860157 intergenic not near genes chr3R 22860209 intergenic not near genes chr3R 22860261 intergenic not near genes chr3R_5_22860001 chr3R_22860001 RAL-358 1038 chr3R 22990356 22990375 chr3R 22990611 22990630 4 254 0.5 3.0 1.8 1.4 274 chr3R 22990356 intron,exon Nha2 -,Or94b + chr3R 22990493 intron,intron Nha2 -,Or94b + chr3R 22990630 intron Nha2 - chr3R_4_22990001 chr3R_22990001 RAL-358 1039 chr3R 23070661 23070664 chr3R 23070741 23070744 4 80 1.0 0.0 0.5 2.7 83 chr3R 23070661 3` UTR CG13830 - chr3R 23070702 3` UTR CG13830 - chr3R 23070744 3` UTR CG13830 - chr3R_4_23070001 chr3R_23070001 RAL-358 1040 chr3R 23245992 23246025 chr3R 23246074 23246102 11 81 2.5 0.0 1.2 5.0 110 chr3R 23245992 intron CG4467 - chr3R 23246047 intron CG4467 - chr3R 23246102 intron CG4467 - chr3R_11_23245001 chr3R_23245001 RAL-358 1041 chr3R 23277349 23277371 chr3R 23277439 23277461 9 90 0.0 0.5 0.2 7.5 112 chr3R 23277349 intron orb - chr3R 23277405 intron orb - chr3R 23277461 intron orb - chr3R_9_23275001 chr3R_23275001 RAL-358 1042 chr3R 23303632 23303654 chr3R 23303708 23303732 7 78 3.5 1.0 2.2 2.2 100 chr3R 23303632 intron pnt - chr3R 23303682 intron pnt - chr3R 23303732 intron pnt - chr3R_7_23300001 chr3R_23300001 RAL-358 1043 chr3R 23533528 23533537 chr3R 23533620 23533629 6 92 7.0 8.0 7.5 0.7 101 chr3R 23533528 exon CG10170 - chr3R 23533578 exon CG10170 - chr3R 23533629 exon CG10170 - chr3R_6_23530001 chr3R_23530001 RAL-358 1044 chr3R 23557879 23557896 chr3R 23557957 23557974 5 78 0.5 4.5 2.5 1.4 95 chr3R 23557879 intron beat-IV + chr3R 23557926 intron beat-IV + chr3R 23557974 intron beat-IV + chr3R_5_23555001 chr3R_23555001 RAL-358 1045 chr3R 23572767 23572776 chr3R 23572887 23572896 5 120 0.0 2.5 1.2 2.3 129 chr3R 23572767 intron beat-IV + chr3R 23572832 intron beat-IV + chr3R 23572896 intron beat-IV + chr3R_5_23570001 chr3R_23570001 RAL-358 1046 chr3R 23608577 23608586 chr3R 23608704 23608714 4 128 2.5 2.0 2.2 1.2 137 chr3R 23608577 intron CG31145 - chr3R 23608646 intron CG31145 - chr3R 23608714 intron CG31145 - chr3R_4_23605001 chr3R_23605001 RAL-358 1047 chr3R 23684706 23684728 chr3R 23685192 23685213 roo 4 486 0.5 0.5 0.5 2.7 507 chr3R 23684706 intron CG18754 + chr3R 23684960 intron CG18754 + chr3R 23685213 exon CG18754 + chr3R_4_23680001 chr3R_23680001 RAL-358 1048 chr3R 23714713 23714730 chr3R 23714807 23714824 4 94 4.0 2.0 3.0 1.0 111 chr3R 23714713 intron nau - chr3R 23714768 intron nau - chr3R 23714824 intron nau - chr3R_4_23710001 chr3R_23710001 RAL-358 1049 chr3R 23820638 23820658 chr3R 23820722 23820742 6 84 0.5 3.5 2.0 2.0 104 chr3R 23820638 5` UTR CG34355 + chr3R 23820690 5` UTR CG34355 + chr3R 23820742 5` UTR CG34355 + chr3R_6_23820001 chr3R_23820001 RAL-358 1050 chr3R 23835405 23835432 chr3R 23844555 23844582 roo 4 9150 1.5 3.5 2.5 1.1 9177 chr3R 23835405 intron CG34355 + chr3R 23839994 intron CG34355 + chr3R 23844582 intron CG34355 + chr3R_4_23835001 chr3R_23835001 RAL-358 1051 chr3R 23940402 23940416 chr3R 23940511 23940524 5 108 3.5 2.5 3.0 1.2 122 chr3R 23940402 intron Gdh - chr3R 23940463 intron Gdh - chr3R 23940524 intron Gdh - chr3R_5_23940001 chr3R_23940001 RAL-358 1052 chr3R 24041999 24042029 chr3R 24042112 24042141 4 113 1.5 1.0 1.2 1.8 142 chr3R 24041999 3` UTR spas + chr3R 24042070 3` UTR spas + chr3R 24042141 3` UTR spas + chr3R_4_24040001 chr3R_24040001 RAL-358 1053 chr3R 24072087 24072111 chr3R 24072525 24072548 jockey 6 437 0.5 4.0 2.2 1.9 461 chr3R 24072087 intron 4EHP - chr3R 24072318 intron 4EHP - chr3R 24072548 intron 4EHP - chr3R_6_24070001 chr3R_24070001 RAL-358 1054 chr3R 24076913 24076943 chr3R 24078380 24078410 hobo 5 1467 2.5 2.0 2.2 1.6 1497 chr3R 24076913 intron 4EHP - chr3R 24077662 intron 4EHP - chr3R 24078410 intron 4EHP - chr3R_5_24075001 chr3R_24075001 RAL-358 1055 chr3R 24100460 24100612 chr3R 24100555 24100836 9 181 1.0 0.5 0.8 5.0 376 chr3R 24100460 intron 4EHP - chr3R 24100648 intron 4EHP - chr3R 24100836 intron 4EHP - chr3R_9_24100001 chr3R_24100001 RAL-358 1056 chr3R 24207223 24207243 chr3R 24212298 24212319 flea 6 5076 1.5 2.5 2.0 2.0 5096 chr3R 24207223 intron twin - chr3R 24209771 intron twin - chr3R 24212319 intron twin - chr3R_6_24205001 chr3R_24205001 RAL-358 1057 chr3R 24431600 24431626 chr3R 24431678 24431704 6 78 0.0 0.0 0.0 6.0 104 chr3R 24431600 intron nAChRalpha1 - chr3R 24431652 intron nAChRalpha1 - chr3R 24431704 intron nAChRalpha1 - chr3R_6_24430001 chr3R_24430001 RAL-358 1058 chr3R 24493277 24493291 chr3R 24493506 24493520 BS 5 229 2.0 0.0 1.0 2.5 243 chr3R 24493277 intergenic not near genes chr3R 24493398 intergenic not near genes chr3R 24493520 intergenic not near genes chr3R_5_24490001 chr3R_24490001 RAL-358 1059 chr3R 24624380 24624393 chr3R 24624469 24624481 5 89 0.0 1.5 0.8 2.8 101 chr3R 24624380 intron Syx18 - chr3R 24624430 intron Syx18 - chr3R 24624481 exon Syx18 - chr3R_5_24620001 chr3R_24620001 RAL-358 1060 chr3R 24670162 24670196 chr3R 24670246 24670280 9 84 0.0 0.5 0.2 7.5 118 chr3R 24670162 intron slo + chr3R 24670221 intron slo + chr3R 24670280 intron slo + chr3R_9_24670001 chr3R_24670001 RAL-358 1061 chr3R 24730092 24730119 chr3R 24732470 24732497 Doc 6 2378 2.0 0.0 1.0 3.0 2405 chr3R 24730092 intron tok + chr3R 24731294 intron tok + chr3R 24732497 intron tok + chr3R_6_24730001 chr3R_24730001 RAL-358 1062 chr3R 24842121 24842136 chr3R 24842207 24842222 8 86 1.5 2.5 2.0 2.7 101 chr3R 24842121 5` UTR Esp + chr3R 24842172 5` UTR Esp + chr3R 24842222 5` UTR Esp + chr3R_8_24840001 chr3R_24840001 RAL-358 1063 chr3R 24893473 24893481 chr3R 24893553 24893561 4 80 1.5 1.5 1.5 1.6 88 chr3R 24893473 intron CG31121 - chr3R 24893517 intron CG31121 - chr3R 24893561 intron CG31121 - chr3R_4_24890001 chr3R_24890001 RAL-358 1064 chr3R 25004902 25004916 chr3R 25004985 25004999 4 83 0.5 2.5 1.5 1.6 97 chr3R 25004902 intron tnc + chr3R 25004950 intron tnc + chr3R 25004999 intron tnc + chr3R_4_25000001 chr3R_25000001 RAL-358 1065 chr3R 25209595 25209627 chr3R 25209677 25209705 8 81 1.0 2.0 1.5 3.2 110 chr3R 25209595 intron CG13654 + chr3R 25209650 intron CG13654 + chr3R 25209705 intron CG13654 + chr3R_8_25205001 chr3R_25205001 RAL-358 1066 chr3R 25302142 25302158 chr3R 25302358 25302374 5 216 12.0 3.5 7.8 0.6 232 chr3R 25302142 exon CG13659 + chr3R 25302258 exon CG13659 + chr3R 25302374 intergenic CG13659 +,CG31370 + chr3R_5_25300001 chr3R_25300001 RAL-358 1067 chr3R 25377089 25377093 chr3R 25377355 25377355 5 265 3.5 0.5 2.0 1.7 266 chr3R 25377089 intron Fur1 - chr3R 25377222 intron Fur1 - chr3R 25377355 intron Fur1 - chr3R_5_25375001 chr3R_25375001 RAL-358 1068 chr3R 25422069 25422092 chr3R 25422149 25422171 8 80 2.5 0.0 1.2 3.6 102 chr3R 25422069 intron Fur1 - chr3R 25422120 intron Fur1 - chr3R 25422171 intron Fur1 - chr3R_8_25420001 chr3R_25420001 RAL-358 1069 chr3R 25464153 25464174 chr3R 25464361 25464382 5 208 0.5 3.0 1.8 1.8 229 chr3R 25464153 intron Fur1 - chr3R 25464268 intron Fur1 - chr3R 25464382 intron Fur1 - chr3R_5_25460001 chr3R_25460001 RAL-358 1070 chr3R 25526252 25526285 chr3R 25526329 25526362 5 76 0.0 2.0 1.0 2.5 110 chr3R 25526252 intron msi + chr3R 25526307 intron msi + chr3R 25526362 intron msi + chr3R_5_25525001 chr3R_25525001 RAL-358 1071 chr3R 25607463 25607466 chr3R 25607550 25607551 4 86 3.5 0.0 1.8 1.4 88 chr3R 25607463 3` UTR,intron msi +,ymp - chr3R 25607507 3` UTR,intron msi +,ymp - chr3R 25607551 3` UTR,intron msi +,ymp - chr3R_4_25605001 chr3R_25605001 RAL-358 1072 chr3R 25621053 25621077 chr3R 25621129 25621153 5 76 0.5 2.0 1.2 2.3 100 chr3R 25621053 intron Npl4 - chr3R 25621103 intron Npl4 - chr3R 25621153 intron Npl4 - chr3R_5_25620001 chr3R_25620001 RAL-358 1073 chr3R 25642590 25642623 chr3R 25642681 25642714 11 91 0.5 1.5 1.0 5.5 124 chr3R 25642590 intron jigr1 + chr3R 25642652 intron jigr1 + chr3R 25642714 intron jigr1 + chr3R_11_25640001 chr3R_25640001 RAL-358 1074 chr3R 25671239 25671246 chr3R 25671337 25671344 5 98 2.0 0.0 1.0 2.5 105 chr3R 25671239 intron Lgr3 + chr3R 25671292 intron Lgr3 + chr3R 25671344 intron Lgr3 + chr3R_5_25670001 chr3R_25670001 RAL-358 1075 chr3R 25689126 25689163 chr3R 25689234 25689271 8 108 2.0 3.0 2.5 2.3 145 chr3R 25689126 intergenic not near genes chr3R 25689198 intergenic not near genes chr3R 25689271 intergenic not near genes chr3R_8_25685001 chr3R_25685001 RAL-358 1076 chr3R 25765891 25765908 chr3R 25765970 25765987 8 79 2.0 1.0 1.5 3.2 96 chr3R 25765891 intergenic not near genes chr3R 25765939 intergenic not near genes chr3R 25765987 intergenic not near genes chr3R_8_25765001 chr3R_25765001 RAL-358 1077 chr3R 25780698 25780707 chr3R 25781061 25781071 5 364 0.0 0.5 0.2 4.2 373 chr3R 25780698 intergenic not near genes chr3R 25780884 intergenic not near genes chr3R 25781071 intergenic not near genes chr3R_5_25780001 chr3R_25780001 RAL-358 1078 chr3R 25796385 25796402 chr3R 25796463 25796478 4 78 3.5 0.0 1.8 1.4 93 chr3R 25796385 intergenic CR43847 - chr3R 25796432 intergenic CR43847 - chr3R 25796478 intergenic CR43847 - chr3R_4_25795001 chr3R_25795001 RAL-358 1079 chr3R 25801269 25801287 chr3R 25802253 25802271 4 984 1.0 3.5 2.2 1.2 1002 chr3R 25801269 intergenic not near genes chr3R 25801770 intergenic not near genes chr3R 25802271 intergenic not near genes chr3R_4_25800001 chr3R_25800001 RAL-358 1080 chr3R 25832691 25832719 chr3R 25841873 25841901 roo 4 9182 2.5 1.0 1.8 1.4 9210 chr3R 25832691 exon alpha4GT2 + chr3R 25837296 intron alpha4GT2 + chr3R 25841901 exon alpha4GT2 + chr3R_4_25835001 chr3R_25835001 RAL-358 1081 chr3R 25843638 25843657 chr3R 25843768 25843787 9 130 3.0 1.0 2.0 3.0 149 chr3R 25843638 intergenic CR45653 + chr3R 25843712 intergenic CR45653 + chr3R 25843787 intergenic CR45653 + chr3R_9_25840001 chr3R_25840001 RAL-358 1082 chr3R 26015704 26015728 chr3R 26015791 26015815 8 87 2.5 0.5 1.5 3.2 111 chr3R 26015704 3` UTR,5` UTR Kaz-m1 +,CR45040 + chr3R 26015760 3` UTR,5` UTR Kaz-m1 +,CR45040 + chr3R 26015815 3` UTR,5` UTR Kaz-m1 +,CR45040 + chr3R_8_26015001 chr3R_26015001 RAL-358 1083 chr3R 26093850 26093875 chr3R 26093928 26093953 7 78 1.0 1.0 1.0 3.5 103 chr3R 26093850 intron dys - chr3R 26093902 intron dys - chr3R 26093953 intron dys - chr3R_7_26090001 chr3R_26090001 RAL-358 1084 chr3R 26121961 26121973 chr3R 26122058 26122070 6 97 0.0 2.0 1.0 3.0 109 chr3R 26121961 intron CG31324 + chr3R 26122016 intron CG31324 + chr3R 26122070 intron CG31324 + chr3R_6_26120001 chr3R_26120001 RAL-358 1085 chr3R 26126278 26126280 chr3R 26126383 26126384 4 105 3.0 2.0 2.5 1.1 106 chr3R 26126278 intron CG31324 + chr3R 26126331 intron CG31324 + chr3R 26126384 intron CG31324 + chr3R_4_26125001 chr3R_26125001 RAL-358 1086 chr3R 26166180 26166207 chr3R 26166266 26166293 8 86 1.5 0.0 0.8 4.4 113 chr3R 26166180 intergenic not near genes chr3R 26166236 intergenic not near genes chr3R 26166293 intergenic not near genes chr3R_8_26165001 chr3R_26165001 RAL-358 1087 chr3R 26265813 26265844 chr3R 26265901 26265932 4 88 1.0 1.0 1.0 2.0 119 chr3R 26265813 intron CG6154 + chr3R 26265872 intron CG6154 + chr3R 26265932 intron CG6154 + chr3R_4_26265001 chr3R_26265001 RAL-358 1088 chr3R 26320354 26320368 chr3R 26320537 26320555 7 186 3.0 2.0 2.5 2.0 201 chr3R 26320354 intron CG33970 + chr3R 26320454 intron CG33970 + chr3R 26320555 intron CG33970 + chr3R_7_26320001 chr3R_26320001 RAL-358 1089 chr3R 26325699 26325701 chr3R 26325787 26325789 4 88 3.0 6.0 4.5 0.7 90 chr3R 26325699 intron CG33970 + chr3R 26325744 intron CG33970 + chr3R 26325789 intron CG33970 + chr3R_4_26325001 chr3R_26325001 RAL-358 1090 chr3R 26425891 26425909 chr3R 26425975 26425992 5 84 0.0 2.0 1.0 2.5 101 chr3R 26425891 intron CR31084 + chr3R 26425942 intron CR31084 + chr3R 26425992 intron CR31084 + chr3R_5_26425001 chr3R_26425001 RAL-358 1091 chr3R 26450522 26450552 chr3R 26450620 26450650 5 98 0.0 1.0 0.5 3.3 128 chr3R 26450522 exon Hex-t1 + chr3R 26450586 intergenic Hex-t1 +,Hex-t2 + chr3R 26450650 intergenic Hex-t2 +,Hex-t1 + chr3R_5_26450001 chr3R_26450001 RAL-358 1092 chr3R 26553214 26553240 chr3R 26553718 26553744 4 504 1.5 1.0 1.2 1.8 530 chr3R 26553214 intron scrib + chr3R 26553479 intron scrib + chr3R 26553744 intron scrib + chr3R_4_26550001 chr3R_26550001 RAL-358 1093 chr3R 26607747 26607760 chr3R 26607823 26607836 4 76 1.5 3.0 2.2 1.2 89 chr3R 26607747 5` UTR CR44951 + chr3R 26607792 5` UTR CR44951 + chr3R 26607836 5` UTR CR44951 + chr3R_4_26605001 chr3R_26605001 RAL-358 1094 chr3R 26641637 26641662 chr3R 26641723 26641749 7 86 1.5 1.5 1.5 2.8 112 chr3R 26641637 intergenic not near genes chr3R 26641693 intergenic not near genes chr3R 26641749 intergenic not near genes chr3R_7_26640001 chr3R_26640001 RAL-358 1095 chr3R 26660650 26660659 chr3R 26660734 26660742 6 84 1.0 0.5 0.8 3.3 92 chr3R 26660650 intron beat-VII - chr3R 26660696 intron beat-VII - chr3R 26660742 intron beat-VII - chr3R_6_26660001 chr3R_26660001 RAL-358 1096 chr3R 26695564 26695577 chr3R 26695673 26695686 4 109 2.0 1.0 1.5 1.6 122 chr3R 26695564 intergenic not near genes chr3R 26695625 intergenic not near genes chr3R 26695686 intergenic not near genes chr3R_4_26695001 chr3R_26695001 RAL-358 1097 chr3R 26770242 26770272 chr3R 26770319 26770349 6 77 1.0 0.0 0.5 4.0 107 chr3R 26770242 intergenic CR45563 + chr3R 26770296 intergenic CR45563 + chr3R 26770349 intergenic not near genes chr3R_6_26770001 chr3R_26770001 RAL-358 1098 chr3R 26789609 26789625 chr3R 26789688 26789704 6 79 0.0 0.0 0.0 6.0 95 chr3R 26789609 intergenic not near genes chr3R 26789656 intergenic not near genes chr3R 26789704 intergenic not near genes chr3R_6_26785001 chr3R_26785001 RAL-358 1099 chr3R 26917292 26917315 chr3R 26917375 26917398 7 83 0.0 0.5 0.2 5.8 106 chr3R 26917292 intron sda + chr3R 26917345 intron sda + chr3R 26917398 intron sda + chr3R_7_26915001 chr3R_26915001 RAL-358 1100 chr3R 27140518 27140536 chr3R 27148127 27148146 412 7 7610 1.5 1.5 1.5 2.8 7628 chr3R 27140518 intron CG6051 - chr3R 27144332 intron CG6051 - chr3R 27148146 intron CG6051 - chr3R_7_27140001 chr3R_27140001 RAL-358 1101 chr3R 27241402 27241427 chr3R 27244702 27244727 9 3300 22.5 20.0 21.2 0.4 3325 chr3R 27241402 exon CG17991 + chr3R 27243064 exon CG18766 - chr3R 27244727 intron CG18766 - chr3R_9_27240001 chr3R_27240001 RAL-358 1102 chr3R 27245591 27245611 chr3R 27245682 27245700 6 90 0.0 1.0 0.5 4.0 109 chr3R 27245591 intergenic CG18766 - chr3R 27245646 intergenic CG18766 - chr3R 27245700 intergenic CG18766 - chr3R_6_27245001 chr3R_27245001 RAL-358 1103 chr3R 27300865 27300877 chr3R 27300957 27300969 11 91 0.0 0.0 0.0 11.0 104 chr3R 27300865 intron CG3339 - chr3R 27300917 intron CG3339 - chr3R 27300969 intron CG3339 - chr3R_11_27300001 chr3R_27300001 RAL-358 1104 chr3R 27316005 27316013 chr3R 27316080 27316089 5 75 4.5 0.5 2.5 1.4 84 chr3R 27316005 intron CG3339 - chr3R 27316047 intron CG3339 - chr3R 27316089 exon CG3339 - chr3R_5_27315001 chr3R_27315001 RAL-358 1105 chr3R 27329473 27329498 chr3R 27329550 27329574 5 77 0.5 2.5 1.5 2.0 101 chr3R 27329473 intergenic CG3330 - chr3R 27329524 intergenic CG3330 - chr3R 27329574 intergenic CG3330 - chr3R_5_27325001 chr3R_27325001 RAL-358 1106 chr3R 27342791 27342826 chr3R 27351372 27351407 Tirant 4 8581 0.5 0.5 0.5 2.7 8616 chr3R 27342791 intron CG42534 + chr3R 27347099 intron CG42534 + chr3R 27351407 intron CG42534 + chr3R_4_27345001 chr3R_27345001 RAL-358 1107 chr3R 27377473 27377503 chr3R 27377561 27377591 9 87 0.0 1.0 0.5 6.0 118 chr3R 27377473 3` UTR side - chr3R 27377532 3` UTR side - chr3R 27377591 3` UTR side - chr3R_9_27375001 chr3R_27375001 RAL-358 1108 chr3R 27457863 27457895 chr3R 27457955 27457987 7 92 1.5 0.0 0.8 3.9 124 chr3R 27457863 intergenic not near genes chr3R 27457925 intergenic not near genes chr3R 27457987 intergenic not near genes chr3R_7_27455001 chr3R_27455001 RAL-358 1109 chr3R 27619707 27619728 chr3R 27619822 27619843 6 115 0.0 2.0 1.0 3.0 136 chr3R 27619707 intron Tusp + chr3R 27619775 intron Tusp + chr3R 27619843 intron Tusp + chr3R_6_27615001 chr3R_27615001 RAL-358 1110 chr3R 27627085 27627099 chr3R 27627187 27627200 6 102 0.5 2.5 1.5 2.4 115 chr3R 27627085 intron Tusp + chr3R 27627142 intron Tusp + chr3R 27627200 intron Tusp + chr3R_6_27625001 chr3R_27625001 RAL-358 1111 chr3R 27649214 27649215 chr3R 27649294 27649296 4 80 3.0 3.0 3.0 1.0 82 chr3R 27649214 intron tau - chr3R 27649255 intron tau - chr3R 27649296 intron tau - chr3R_4_27645001 chr3R_27645001 RAL-358 1112 chr3R 27706778 27706793 chr3R 27706855 27706870 5 77 0.0 1.0 0.5 3.3 92 chr3R 27706778 intergenic CG12428 -,CG12877 + chr3R 27706824 intergenic CG12428 -,CG12877 + chr3R 27706870 intergenic CG12428 -,CG12877 + chr3R_5_27705001 chr3R_27705001 RAL-358 1113 chr3R 27856758 27856786 chr3R 27858241 27858269 hopper2 11 1483 0.5 1.0 0.8 6.1 1511 chr3R 27856758 intron CG34353 - chr3R 27857514 intron CG34353 - chr3R 27858269 intron CG34353 - chr3R_11_27855001 chr3R_27855001 RAL-358 1114 chr3R 27862961 27862985 chr3R 27868266 27868290 Transpac 4 5305 2.0 2.5 2.2 1.2 5329 chr3R 27862961 intron CG34353 - chr3R 27865626 intron CG34353 - chr3R 27868290 intron CG34353 - chr3R_4_27865001 chr3R_27865001 RAL-358 1115 chr3R 27875706 27875732 chr3R 27882761 27882786 297 5 7054 1.0 5.0 3.0 1.2 7080 chr3R 27875706 intron CG34353 - chr3R 27879246 intron CG34353 - chr3R 27882786 intron CG34353 - chr3R_5_27875001 chr3R_27875001 RAL-358 1116 chr3R 27900331 27900350 chr3R 27900413 27900432 4 82 3.0 1.0 2.0 1.3 101 chr3R 27900331 intron CG34353 - chr3R 27900382 intron CG34353 - chr3R 27900432 intron CG34353 - chr3R_4_27900001 chr3R_27900001 RAL-358 1117 chr3R 28035490 28035515 chr3R 28035567 28035592 11 77 0.0 1.5 0.8 6.1 102 chr3R 28035490 intron CG34362 + chr3R 28035541 intron CG34362 + chr3R 28035592 intron CG34362 + chr3R_11_28035001 chr3R_28035001 RAL-358 1118 chr3R 28102573 28102595 chr3R 28102810 28102833 5 238 1.0 3.5 2.2 1.6 260 chr3R 28102573 intergenic not near genes chr3R 28102703 intergenic not near genes chr3R 28102833 intergenic not near genes chr3R_5_28100001 chr3R_28100001 RAL-358 1119 chr3R 28118588 28118878 chr3R 28118720 28118959 4 106 1.0 2.0 1.5 1.6 371 chr3R 28118588 intergenic not near genes chr3R 28118774 intergenic not near genes chr3R 28118959 intergenic not near genes chr3R_4_28115001 chr3R_28115001 RAL-358 1120 chr3R 28201839 28201844 chr3R 28201937 28201943 4 98 4.0 0.0 2.0 1.3 104 chr3R 28201839 intron CG34354 + chr3R 28201891 intron CG34354 + chr3R 28201943 intron CG34354 + chr3R_4_28200001 chr3R_28200001 RAL-358 1121 chr3R 28253341 28253355 chr3R 28255851 28255865 jockey 5 2509 3.0 3.0 3.0 1.2 2524 chr3R 28253341 intergenic not near genes chr3R 28254603 intergenic not near genes chr3R 28255865 intergenic not near genes chr3R_5_28250001 chr3R_28250001 RAL-358 1122 chr3R 28280724 28280738 chr3R 28280902 28280916 4 178 4.0 1.0 2.5 1.1 192 chr3R 28280724 intergenic not near genes chr3R 28280820 intergenic not near genes chr3R 28280916 intergenic not near genes chr3R_4_28280001 chr3R_28280001 RAL-358 1123 chr3R 28300164 28300193 chr3R 28300250 28300279 5 85 2.0 2.5 2.2 1.6 115 chr3R 28300164 intergenic not near genes chr3R 28300222 intergenic not near genes chr3R 28300279 intergenic not near genes chr3R_5_28300001 chr3R_28300001 RAL-358 1124 chr3R 28305313 28305332 chr3R 28306485 28306504 4 1172 0.5 1.5 1.0 2.0 1191 chr3R 28305313 intergenic not near genes chr3R 28305908 intergenic not near genes chr3R 28306504 intergenic not near genes chr3R_4_28305001 chr3R_28305001 RAL-358 1125 chr3R 28425187 28425221 chr3R 28425265 28425299 7 78 1.5 0.0 0.8 3.9 112 chr3R 28425187 intron beat-VI + chr3R 28425243 intron beat-VI + chr3R 28425299 intron beat-VI + chr3R_7_28425001 chr3R_28425001 RAL-358 1126 chr3R 28628134 28628152 chr3R 28628217 28628235 5 83 0.0 4.0 2.0 1.7 101 chr3R 28628134 intron CG10011 - chr3R 28628184 intron CG10011 - chr3R 28628235 intron CG10011 - chr3R_5_28625001 chr3R_28625001 RAL-358 1127 chr3R 28745599 28745622 chr3R 28745685 28745706 4 86 1.0 0.5 0.8 2.2 107 chr3R 28745599 intergenic not near genes chr3R 28745652 intergenic not near genes chr3R 28745706 intergenic not near genes chr3R_4_28745001 chr3R_28745001 RAL-358 1128 chr3R 28792875 28792903 chr3R 28797970 28797997 jockey 7 5093 0.5 3.0 1.8 2.5 5122 chr3R 28792875 intergenic not near genes chr3R 28795436 intergenic not near genes chr3R 28797997 intergenic not near genes chr3R_7_28795001 chr3R_28795001 RAL-358 1129 chr3R 28827692 28827711 chr3R 28827848 28827867 7 156 1.5 2.0 1.8 2.5 175 chr3R 28827692 intron WASp - chr3R 28827780 intron WASp - chr3R 28827867 intron WASp - chr3R_7_28825001 chr3R_28825001 RAL-358 1130 chr3R 21907534 21907536 chr3R 28831799 28831801 43 6924265 6.5 10.0 8.2 4.7 6924267 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831801 intron WASp - chr3R_43_25365001 chr3R_25365001 RAL-358 1131 chr3R 21907534 21907536 chr3R 28831802 28831802 34 6924267 6.5 10.5 8.5 3.6 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_34_25365001 chr3R_25365001 RAL-358 1132 chr3R 28960510 28960520 chr3R 28960595 28960605 7 85 0.5 1.0 0.8 3.9 95 chr3R 28960510 intron CG14521 - chr3R 28960558 intron CG14521 - chr3R 28960605 intron CG14521 - chr3R_7_28960001 chr3R_28960001 RAL-358 1133 chr3R 29009957 29009983 chr3R 29010063 29010089 6 106 0.0 1.0 0.5 4.0 132 chr3R 29009957 intron wat - chr3R 29010023 intron wat - chr3R 29010089 intron wat - chr3R_6_29010001 chr3R_29010001 RAL-358 1134 chr3R 21907534 21907536 chr3R 29013340 29013340 6 7105805 6.5 9.5 8.0 0.7 7105806 chr3R 21907534 intergenic CG6678 + chr3R 25460437 intron Fur1 - chr3R 29013340 intron wat - chr3R_6_25460001 chr3R_25460001 RAL-358 1135 chr3R 29067613 29067644 chr3R 29067757 29067790 6 147 0.0 0.0 0.0 6.0 177 chr3R 29067613 intron CG11873 + chr3R 29067702 intron CG11873 + chr3R 29067790 intron CG11873 + chr3R_6_29065001 chr3R_29065001 RAL-358 1136 chr3R 29079383 29079399 chr3R 29080755 29080771 NOF 4 1372 4.0 4.0 4.0 0.8 1388 chr3R 29079383 intron CG11873 + chr3R 29080077 intron CG11873 + chr3R 29080771 intron CG11873 + chr3R_4_29080001 chr3R_29080001 RAL-358 1137 chr3R 29213064 29213092 chr3R 29213147 29213175 6 83 0.5 0.0 0.2 5.0 111 chr3R 29213064 intergenic not near genes chr3R 29213120 intergenic not near genes chr3R 29213175 intergenic not near genes chr3R_6_29210001 chr3R_29210001 RAL-358 1138 chr3R 29319823 29319852 chr3R 29320142 29320171 jockey 7 319 0.0 3.0 1.5 2.8 348 chr3R 29319823 intergenic Cnx99A - chr3R 29319997 intergenic Cnx99A - chr3R 29320171 intergenic not near genes chr3R_7_29315001 chr3R_29315001 RAL-358 1139 chr3R 29329171 29329177 chr3R 29329514 29329520 4 343 3.0 2.0 2.5 1.1 349 chr3R 29329171 intergenic not near genes chr3R 29329346 intergenic not near genes chr3R 29329520 intergenic not near genes chr3R_4_29325001 chr3R_29325001 RAL-358 1140 chr3R 29406618 29406648 chr3R 29407904 29407934 jockey 5 1286 2.5 0.0 1.2 2.3 1316 chr3R 29406618 intron Ptp99A + chr3R 29407276 intron Ptp99A + chr3R 29407934 intron Ptp99A + chr3R_5_29405001 chr3R_29405001 RAL-358 1141 chr3R 29472012 29472040 chr3R 29472104 29472131 9 93 0.5 2.5 1.5 3.6 119 chr3R 29472012 intron Ptp99A + chr3R 29472072 intron Ptp99A + chr3R 29472131 intron Ptp99A + chr3R_9_29470001 chr3R_29470001 RAL-358 1142 chr3R 29590387 29590394 chr3R 29590480 29590487 4 93 0.5 3.0 1.8 1.4 100 chr3R 29590387 intron CG31041 - chr3R 29590437 intron CG31041 - chr3R 29590487 intron CG31041 - chr3R_4_29590001 chr3R_29590001 RAL-358 1143 chr3R 29738267 29738290 chr3R 29739734 29739757 hobo 8 1467 1.5 1.5 1.5 3.2 1490 chr3R 29738267 intergenic CG1969 +,CG7598 + chr3R 29739012 intron CG1969 + chr3R 29739757 5` UTR CG1969 + chr3R_8_29735001 chr3R_29735001 RAL-358 1144 chr3R 29758943 29758964 chr3R 29759021 29759042 5 78 1.0 0.5 0.8 2.8 99 chr3R 29758943 3` UTR CR44953 - chr3R 29758992 3` UTR CR44953 - chr3R 29759042 intergenic CR44953 - chr3R_5_29755001 chr3R_29755001 RAL-358 1145 chr3R 29760360 29760392 chr3R 29761561 29761592 pogo 4 1201 0.5 0.5 0.5 2.7 1232 chr3R 29760360 intergenic not near genes chr3R 29760976 intergenic not near genes chr3R 29761592 intergenic not near genes chr3R_4_29760001 chr3R_29760001 RAL-358 1146 chr3R 29768487 29768607 chr3R 29768578 29768683 10 83 0.0 0.0 0.0 10.0 196 chr3R 29768487 intron kay + chr3R 29768585 intron kay + chr3R 29768683 intron kay + chr3R_10_29765001 chr3R_29765001 RAL-358 1147 chr3R 29880593 29880615 chr3R 29880678 29880698 5 84 3.0 1.5 2.2 1.6 105 chr3R 29880593 intron CG31038 + chr3R 29880646 intron CG31038 + chr3R 29880698 intron CG31038 + chr3R_5_29880001 chr3R_29880001 RAL-358 1148 chr3R 29882026 29882049 chr3R 29891183 29891206 roo 9 9157 1.5 1.0 1.2 4.1 9180 chr3R 29882026 intron CG31038 + chr3R 29886616 intron CG31038 + chr3R 29891206 intron CG31038 + chr3R_9_29885001 chr3R_29885001 RAL-358 1149 chr3R 29923608 29923636 chr3R 29925456 29925483 4 1847 2.5 11.0 6.8 0.5 1875 chr3R 29923608 intergenic Jon99Cii -,Jon99Ciii + chr3R 29924546 exon Jon99Cii - chr3R 29925483 exon Jon99Ci - chr3R_4_29920001 chr3R_29920001 RAL-358 1150 chr3R 29963484 29963509 chr3R 29963586 29963608 8 102 0.0 2.5 1.2 3.6 124 chr3R 29963484 intron TkR99D - chr3R 29963546 intron TkR99D - chr3R 29963608 intron TkR99D - chr3R_8_29960001 chr3R_29960001 RAL-358 1151 chr3R 30009448 30009459 chr3R 30009588 30009599 8 140 2.0 0.5 1.2 3.6 151 chr3R 30009448 intron Nlp + chr3R 30009524 intron Nlp + chr3R 30009599 intron Nlp + chr3R_8_30005001 chr3R_30005001 RAL-358 1152 chr3R 30032169 30032171 chr3R 30032248 30032250 4 79 0.5 0.5 0.5 2.7 81 chr3R 30032169 intron Axn + chr3R 30032210 intron Axn + chr3R 30032250 intron Axn + chr3R_4_30030001 chr3R_30030001 RAL-358 1153 chr3R 30060896 30060928 chr3R 30061021 30061053 8 124 1.0 0.5 0.8 4.4 157 chr3R 30060896 intron sima + chr3R 30060974 intron sima + chr3R 30061053 intron sima + chr3R_8_30060001 chr3R_30060001 RAL-358 1154 chr3R 30084854 30084862 chr3R 30086321 30086329 hobo 4 1467 0.0 2.0 1.0 2.0 1475 chr3R 30084854 intron sima + chr3R 30085592 intron sima + chr3R 30086329 intron sima + chr3R_4_30085001 chr3R_30085001 RAL-358 1155 chr3R 30224649 30224666 chr3R 30224726 30224744 7 78 0.5 2.5 1.5 2.8 95 chr3R 30224649 intergenic not near genes chr3R 30224696 intergenic not near genes chr3R 30224744 intergenic not near genes chr3R_7_30220001 chr3R_30220001 RAL-358 1156 chr3R 30238759 30238797 chr3R 30239923 30239961 1360 7 1164 0.5 2.0 1.2 3.2 1202 chr3R 30238759 intergenic not near genes chr3R 30239360 intergenic not near genes chr3R 30239961 intergenic not near genes chr3R_7_30235001 chr3R_30235001 RAL-358 1157 chr3R 30262577 30262600 chr3R 30262674 30262697 5 97 1.0 0.5 0.8 2.8 120 chr3R 30262577 intergenic not near genes chr3R 30262637 intergenic not near genes chr3R 30262697 intergenic not near genes chr3R_5_30260001 chr3R_30260001 RAL-358 1158 chr3R 30347032 30347035 chr3R 30347116 30347119 5 85 7.0 5.5 6.2 0.7 87 chr3R 30347032 intron hdc + chr3R 30347076 intron hdc + chr3R 30347119 intron hdc + chr3R_5_30345001 chr3R_30345001 RAL-358 1159 chr3R 30396218 30396246 chr3R 30404484 30404512 roo 5 8266 1.0 4.0 2.5 1.4 8294 chr3R 30396218 intergenic not near genes chr3R 30400365 intergenic not near genes chr3R 30404512 5` UTR CR45570 + chr3R_5_30400001 chr3R_30400001 RAL-358 1160 chr3R 30440695 30440710 chr3R 30440954 30440969 4 259 4.0 2.0 3.0 1.0 274 chr3R 30440695 intron CG15537 - chr3R 30440832 intron CG15537 - chr3R 30440969 intron CG15537 - chr3R_4_30440001 chr3R_30440001 RAL-358 1161 chr3R 30456389 30456402 chr3R 30456469 30456482 4 80 0.5 2.0 1.2 1.8 93 chr3R 30456389 intergenic CG2224 - chr3R 30456436 intergenic CG2224 - chr3R 30456482 3` UTR CG2224 - chr3R_4_30455001 chr3R_30455001 RAL-358 1162 chr3R 30458010 30458031 chr3R 30458090 30458111 7 80 3.5 1.5 2.5 2.0 101 chr3R 30458010 intron CG2224 - chr3R 30458060 intron CG2224 - chr3R 30458111 intron CG2224 - chr3R_7_30455001 chr3R_30455001 RAL-358 1163 chr3R 30471901 30471925 chr3R 30471977 30472001 5 76 0.0 5.5 2.8 1.3 100 chr3R 30471901 intron PH4alphaEFB + chr3R 30471951 intron PH4alphaEFB + chr3R 30472001 intron PH4alphaEFB + chr3R_5_30470001 chr3R_30470001 RAL-358 1164 chr3R 30480476 30480511 chr3R 30482944 30482979 jockey 11 2467 0.5 2.5 1.5 4.4 2503 chr3R 30480476 intron PH4alphaEFB + chr3R 30481728 intron PH4alphaEFB + chr3R 30482979 intron PH4alphaEFB + chr3R_11_30480001 chr3R_30480001 RAL-358 1165 chr3R 30498405 30498427 chr3R 30498605 30498627 6 200 0.0 3.0 1.5 2.4 222 chr3R 30498405 intron PH4alphaNE1 - chr3R 30498516 intron PH4alphaNE1 - chr3R 30498627 intron PH4alphaNE1 - chr3R_6_30495001 chr3R_30495001 RAL-358 1166 chr3R 30536084 30536090 chr3R 30538096 30538102 5 2012 1.0 1.5 1.2 2.3 2018 chr3R 30536084 intron tmod + chr3R 30537093 intron tmod + chr3R 30538102 intron tmod + chr3R_5_30535001 chr3R_30535001 RAL-358 1167 chr3R 30544669 30544690 chr3R 30544749 30544770 5 80 0.5 1.5 1.0 2.5 101 chr3R 30544669 intron tmod + chr3R 30544720 intron tmod + chr3R 30544770 intron tmod + chr3R_5_30540001 chr3R_30540001 RAL-358 1168 chr3R 30592520 30592526 chr3R 30592630 30592636 6 109 2.5 3.0 2.8 1.6 116 chr3R 30592520 intergenic CG2246 - chr3R 30592578 intergenic CG2246 - chr3R 30592636 intergenic CG2246 - chr3R_6_30590001 chr3R_30590001 RAL-358 1169 chr3R 30627609 30627637 chr3R 30627689 30627717 8 80 1.0 6.5 3.8 1.7 108 chr3R 30627609 exon CG2267 - chr3R 30627663 exon CG2267 - chr3R 30627717 exon CG2267 - chr3R_8_30625001 chr3R_30625001 RAL-358 1170 chr3R 30679535 30679543 chr3R 30687003 30687011 blood 4 7468 4.0 5.0 4.5 0.7 7476 chr3R 30679535 intergenic not near genes chr3R 30683273 intergenic not near genes chr3R 30687011 intergenic not near genes chr3R_4_30680001 chr3R_30680001 RAL-358 1171 chr3R 30690169 30690183 chr3R 30690253 30690267 4 84 1.5 7.0 4.2 0.8 98 chr3R 30690169 intergenic Spn100A + chr3R 30690218 intergenic Spn100A + chr3R 30690267 intergenic Spn100A + chr3R_4_30690001 chr3R_30690001 RAL-358 1172 chr3R 30900537 30900567 chr3R 30901672 30901702 5 1135 1.5 0.5 1.0 2.5 1165 chr3R 30900537 3` UTR Cyp4c3 + chr3R 30901120 intron CG33483 - chr3R 30901702 intron CG33483 - chr3R_5_30900001 chr3R_30900001 RAL-358 1173 chr3R 30985685 30985715 chr3R 30985770 30985800 5 85 0.5 0.5 0.5 3.3 115 chr3R 30985685 intron 5-HT7 - chr3R 30985742 intron 5-HT7 - chr3R 30985800 intron 5-HT7 - chr3R_5_30985001 chr3R_30985001 RAL-358 1174 chr3R 31067028 31067054 chr3R 31067155 31067181 10 127 2.5 3.0 2.8 2.6 153 chr3R 31067028 intron Sox100B + chr3R 31067104 intron Sox100B + chr3R 31067181 intron Sox100B + chr3R_10_31065001 chr3R_31065001 RAL-358 1175 chr3R 31146748 31146778 chr3R 31146826 31146856 7 78 2.5 1.0 1.8 2.5 108 chr3R 31146748 intron Gycbeta100B + chr3R 31146802 intron Gycbeta100B + chr3R 31146856 intron Gycbeta100B + chr3R_7_31145001 chr3R_31145001 RAL-358 1176 chr3R 31274363 31274388 chr3R 31274441 31274466 9 77 1.5 0.5 1.0 4.5 103 chr3R 31274363 intergenic not near genes chr3R 31274414 intergenic not near genes chr3R 31274466 intergenic not near genes chr3R_9_31270001 chr3R_31270001 RAL-358 1177 chr3R 31279374 31279406 chr3R 31285565 31285595 diver 11 6190 0.0 0.0 0.0 11.0 6221 chr3R 31279374 intergenic not near genes chr3R 31282484 intergenic not near genes chr3R 31285595 intergenic not near genes chr3R_11_31280001 chr3R_31280001 RAL-358 1178 chr3R 31348071 31348081 chr3R 31348147 31348158 8 77 1.0 2.5 1.8 2.9 87 chr3R 31348071 intron CG34347 + chr3R 31348114 intron CG34347 + chr3R 31348158 intron CG34347 + chr3R_8_31345001 chr3R_31345001 RAL-358 1179 chr3R 31413091 31413112 chr3R 31418291 31418312 copia 4 5200 3.0 0.0 1.5 1.6 5221 chr3R 31413091 intron Gprk2 + chr3R 31415702 intron Gprk2 + chr3R 31418312 intron Gprk2 + chr3R_4_31415001 chr3R_31415001 RAL-358 1180 chr3R 31426885 31426912 chr3R 31426976 31427003 9 92 1.5 1.0 1.2 4.1 118 chr3R 31426885 intron Gprk2 + chr3R 31426944 intron Gprk2 + chr3R 31427003 intron Gprk2 + chr3R_9_31425001 chr3R_31425001 RAL-358 1181 chr3R 31435363 31435386 chr3R 31435515 31435538 12 152 1.5 0.5 1.0 6.0 175 chr3R 31435363 intron Gprk2 + chr3R 31435450 intron Gprk2 + chr3R 31435538 intron Gprk2 + chr3R_12_31435001 chr3R_31435001 RAL-358 1182 chr3R 31606141 31606168 chr3R 31606303 31606329 9 162 0.5 0.0 0.2 7.5 188 chr3R 31606141 intron CycG - chr3R 31606235 intron CycG - chr3R 31606329 intron CycG - chr3R_9_31605001 chr3R_31605001 RAL-358 1183 chr3R 31630064 31630081 chr3R 31630169 31630186 7 105 0.5 2.0 1.2 3.2 122 chr3R 31630064 intron kek6 + chr3R 31630125 intron kek6 + chr3R 31630186 intron kek6 + chr3R_7_31630001 chr3R_31630001 RAL-358 1184 chr3R 31691536 31691559 chr3R 31696302 31696324 Doc 9 4766 0.5 6.0 3.2 2.1 4788 chr3R 31691536 intergenic not near genes chr3R 31693930 intergenic not near genes chr3R 31696324 intergenic not near genes chr3R_9_31690001 chr3R_31690001 RAL-358 1185 chr3R 31860285 31860298 chr3R 31860365 31860378 6 80 1.0 4.5 2.8 1.6 93 chr3R 31860285 intron heph - chr3R 31860332 intron heph - chr3R 31860378 intron heph - chr3R_6_31860001 chr3R_31860001 RAL-358 1186 chr3R 31915488 31915501 chr3R 31915595 31915608 4 107 1.0 0.0 0.5 2.7 120 chr3R 31915488 intron heph - chr3R 31915548 intron heph - chr3R 31915608 intron heph - chr3R_4_31915001 chr3R_31915001 RAL-358 1187 chr3R 31924168 31924180 chr3R 31924318 31924332 5 152 2.5 0.0 1.2 2.3 164 chr3R 31924168 intron heph - chr3R 31924250 intron heph - chr3R 31924332 intron heph - chr3R_5_31920001 chr3R_31920001 RAL-358 1188 chr4 946976 946981 chr4 947709 947714 4 733 0.0 7.5 3.8 0.8 738 chr4 946976 3` UTR mGluR + chr4 947345 3` UTR mGluR + chr4 947714 3` UTR mGluR + chr4_4_945001 chr4_945001 RAL-358 1189 chr4 959629 959653 chr4 959806 959832 6 178 2.5 1.5 2.0 2.0 203 chr4 959629 intergenic CR44030 +,CR45201 - chr4 959730 5` UTR CR44030 + chr4 959832 5` UTR CR44030 + chr4_6_955001 chr4_955001 RAL-358 1190 chrX 295860 295874 chrX 303479 303494 412 7 7619 0.5 0.0 0.2 5.8 7634 chrX 295860 intron CG3777 + chrX 299677 intron CG3777 + chrX 303494 intron CG3777 + chrX_7_295001 chrX_295001 RAL-358 1191 chrX 428420 428444 chrX 434605 434628 3S18 4 6185 3.5 1.0 2.2 1.2 6208 chrX 428420 intron CG32816 - chrX 431524 intron CG32816 - chrX 434628 intron CG32816 - chrX_4_430001 chrX_430001 RAL-358 1192 chrX 551430 551451 chrX 558992 559013 412 7 7562 2.5 0.0 1.2 3.2 7583 chrX 551430 intron Appl + chrX 555222 intron Appl + chrX 559013 intron Appl + chrX_7_555001 chrX_555001 RAL-358 1193 chrX 609885 609911 chrX 609977 610003 8 92 0.0 0.5 0.2 6.7 118 chrX 609885 intron CG13366 - chrX 609944 intron CG13366 - chrX 610003 intron CG13366 - chrX_8_605001 chrX_605001 RAL-358 1194 chrX 812282 812298 chrX 817912 817928 297 4 5630 0.0 0.5 0.2 3.3 5646 chrX 812282 intron CG43867 - chrX 815105 intron CG43867 - chrX 817928 intron CG43867 - chrX_4_815001 chrX_815001 RAL-358 1195 chrX 827602 827626 chrX 835394 835418 roo 10 7792 2.5 2.0 2.2 3.1 7816 chrX 827602 intron CG43867 - chrX 831510 intron CG43867 - chrX 835418 intron CG43867 - chrX_10_830001 chrX_830001 RAL-358 1196 chrX 1053119 1053123 chrX 16983076 16983076 6 15929956 3.5 2.0 2.8 1.6 15929957 chrX 1053119 intron CR44779 + chrX 9018098 intron,intron rdgA +,CR43836 - chrX 16983076 intron CG45002 - chrX_6_9015001 chrX_9015001 RAL-358 1197 chrX 1153202 1153210 chrX 1153284 1153292 7 82 3.0 4.0 3.5 1.6 90 chrX 1153202 intergenic not near genes chrX 1153247 intergenic not near genes chrX 1153292 intergenic not near genes chrX_7_1150001 chrX_1150001 RAL-358 1198 chrX 1163300 1163316 chrX 1163377 1163394 5 78 3.0 0.5 1.8 1.8 94 chrX 1163300 intergenic CG34320 - chrX 1163347 intergenic CG34320 - chrX 1163394 intergenic CG34320 - chrX_5_1160001 chrX_1160001 RAL-358 1199 chrX 1253734 1253764 chrX 1253814 1253846 4 81 0.0 3.5 1.8 1.4 112 chrX 1253734 intron Atf3 - chrX 1253790 intron Atf3 - chrX 1253846 intron Atf3 - chrX_4_1250001 chrX_1250001 RAL-358 1200 chrX 1518043 1518061 chrX 1523445 1523463 jockey 5 5401 1.5 1.0 1.2 2.3 5420 chrX 1518043 intergenic inc + chrX 1520753 intergenic not near genes chrX 1523463 intergenic not near genes chrX_5_1520001 chrX_1520001 RAL-358 1201 chrX 1930537 1930567 chrX 1938108 1938138 opus 6 7570 0.5 0.0 0.2 5.0 7601 chrX 1930537 intergenic CG11596 + chrX 1934338 intergenic not near genes chrX 1938138 3` UTR CG3857 - chrX_6_1930001 chrX_1930001 RAL-358 1202 chrX 2069368 2069395 chrX 2069467 2069495 11 100 1.5 0.0 0.8 6.1 127 chrX 2069368 intron,exon CG4199 -,CG4194 + chrX 2069432 intron,3` UTR CG4199 -,CG4194 + chrX 2069495 intron,3` UTR CG4199 -,CG4194 + chrX_11_2065001 chrX_2065001 RAL-358 1203 chrX 2385734 2385751 chrX 2385811 2385829 5 78 1.0 1.0 1.0 2.5 95 chrX 2385734 intron PsGEF - chrX 2385782 intron PsGEF - chrX 2385829 intron PsGEF - chrX_5_2385001 chrX_2385001 RAL-358 1204 chrX 2610387 2610397 chrX 2617504 2617514 HMS-Beagle 5 7117 3.5 1.5 2.5 1.4 7127 chrX 2610387 intergenic CG8636 - chrX 2613950 intergenic not near genes chrX 2617514 intergenic Tsp3A - chrX_5_2610001 chrX_2610001 RAL-358 1205 chrX 2635373 2635399 chrX 2635482 2635508 6 109 0.5 1.0 0.8 3.3 135 chrX 2635373 intron sgg + chrX 2635440 intron sgg + chrX 2635508 intron sgg + chrX_6_2635001 chrX_2635001 RAL-358 1206 chrX 2886653 2886672 chrX 2886743 2886762 6 90 2.5 1.0 1.8 2.1 109 chrX 2886653 intron kirre + chrX 2886708 intron kirre + chrX 2886762 intron kirre + chrX_6_2885001 chrX_2885001 RAL-358 1207 chrX 2910189 2910216 chrX 2911450 2911477 6 1262 13.0 7.0 10.0 0.5 1288 chrX 2910189 intron kirre + chrX 2910833 intron kirre + chrX 2911477 intron kirre + chrX_6_2910001 chrX_2910001 RAL-358 1208 chrX 2917099 2917109 chrX 2917178 2917188 7 80 1.5 0.0 0.8 3.9 89 chrX 2917099 intron kirre + chrX 2917144 intron kirre + chrX 2917188 intron kirre + chrX_7_2915001 chrX_2915001 RAL-358 1209 chrX 2964657 2964658 chrX 2964776 2964777 4 120 2.5 1.5 2.0 1.3 120 chrX 2964657 intron,intron kirre +,rst - chrX 2964717 intron,intron kirre +,rst - chrX 2964777 intron,intron kirre +,rst - chrX_4_2960001 chrX_2960001 RAL-358 1210 chrX 3107233 3107233 chrX 16983076 16983077 4 13875844 5.5 2.0 3.8 0.8 13875844 chrX 3107233 intron kirre + chrX 10045155 intron,3` UTR Cht6 +,CR45185 - chrX 16983077 intron CG45002 - chrX_4_10045001 chrX_10045001 RAL-358 1211 chrX 3203466 3203494 chrX 3203665 3203693 6 199 1.0 0.5 0.8 3.3 227 chrX 3203466 intron dnc + chrX 3203580 intron dnc + chrX 3203693 intron dnc + chrX_6_3200001 chrX_3200001 RAL-358 1212 chrX 3408987 3409016 chrX 3409064 3409093 9 77 0.0 1.5 0.8 5.0 106 chrX 3408987 intron,intron CR44999 +,CG12535 - chrX 3409040 intron,intron CR44999 +,CG12535 - chrX 3409093 intron,intron CR44999 +,CG12535 - chrX_9_3405001 chrX_3405001 RAL-358 1213 chrX 3415018 3415043 chrX 3421203 3421228 3S18 8 6185 1.5 1.0 1.2 3.6 6210 chrX 3415018 intron,intron CR44999 +,CG12535 - chrX 3418123 intron,intron CR44999 +,CG12535 - chrX 3421228 intron,intron CR44999 +,CG12535 - chrX_8_3415001 chrX_3415001 RAL-358 1214 chrX 3493091 3493116 chrX 3502250 3502275 roo 6 9159 2.0 0.0 1.0 3.0 9184 chrX 3493091 intron,intron CR44999 +,Gas8 - chrX 3497683 intron,intron CR44999 +,Gas8 - chrX 3502275 intron,intron CR44999 +,Gas8 - chrX_6_3495001 chrX_3495001 RAL-358 1215 chrX 3881270 3881299 chrX 3881409 3881438 4 139 4.0 1.5 2.8 1.1 168 chrX 3881270 intron VhaAC39-1 + chrX 3881354 intron VhaAC39-1 + chrX 3881438 intron VhaAC39-1 + chrX_4_3880001 chrX_3880001 RAL-358 1216 chrX 3986890 3986893 chrX 3994523 3994526 412 4 7632 1.5 2.5 2.0 1.3 7636 chrX 3986890 intergenic not near genes chrX 3990708 intergenic not near genes chrX 3994526 intergenic not near genes chrX_4_3990001 chrX_3990001 RAL-358 1217 chrX 4029159 4029162 chrX 18122670 18122670 4 14093510 1.5 1.5 1.5 1.6 14093511 chrX 4029159 intergenic not near genes chrX 11075914 exon sev - chrX 18122670 5` UTR CR45606 + chrX_4_11075001 chrX_11075001 RAL-358 1218 chrX 4700398 4700428 chrX 4700740 4700771 jockey 6 343 0.5 1.5 1.0 3.0 373 chrX 4700398 3` UTR ctp + chrX 4700584 3` UTR ctp + chrX 4700771 3` UTR ctp + chrX_6_4700001 chrX_4700001 RAL-358 1219 chrX 4763258 4763285 chrX 4763746 4763771 Stalker4 7 488 1.5 1.5 1.5 2.8 513 chrX 4763258 intergenic not near genes chrX 4763514 intergenic not near genes chrX 4763771 intergenic not near genes chrX_7_4760001 chrX_4760001 RAL-358 1220 chrX 4792384 4792401 chrX 4792817 4792834 jockey 6 433 1.0 4.0 2.5 1.7 450 chrX 4792384 intergenic not near genes chrX 4792609 intergenic not near genes chrX 4792834 intergenic not near genes chrX_6_4790001 chrX_4790001 RAL-358 1221 chrX 4827971 4827991 chrX 4835339 4835362 Stalker4 8 7371 3.5 0.5 2.0 2.7 7391 chrX 4827971 intergenic not near genes chrX 4831666 intergenic not near genes chrX 4835362 intergenic not near genes chrX_8_4830001 chrX_4830001 RAL-358 1222 chrX 4948753 4948778 chrX 4948850 4948875 5 97 0.5 0.5 0.5 3.3 122 chrX 4948753 intron Ptp4E + chrX 4948814 intron Ptp4E + chrX 4948875 intron Ptp4E + chrX_5_4945001 chrX_4945001 RAL-358 1223 chrX 5096280 5096298 chrX 5103845 5103863 springer 4 7565 1.0 0.5 0.8 2.2 7583 chrX 5096280 intron,intron CG15465 +,rg + chrX 5100072 intron,intron CG15465 +,rg + chrX 5103863 intron,intron CG15465 +,rg + chrX_4_5100001 chrX_5100001 RAL-358 1224 chrX 5272824 5272840 chrX 5272911 5272925 9 87 2.0 0.0 1.0 4.5 101 chrX 5272824 intergenic not near genes chrX 5272874 intergenic not near genes chrX 5272925 intergenic not near genes chrX_9_5270001 chrX_5270001 RAL-358 1225 chrX 5349289 5349308 chrX 5349366 5349385 4 77 0.5 1.5 1.0 2.0 96 chrX 5349289 intron SK + chrX 5349337 intron SK + chrX 5349385 intron SK + chrX_4_5345001 chrX_5345001 RAL-358 1226 chrX 5415899 5415923 chrX 5415975 5415998 8 76 1.0 0.0 0.5 5.3 99 chrX 5415899 exon spoon - chrX 5415948 intron spoon - chrX 5415998 intron spoon - chrX_8_5415001 chrX_5415001 RAL-358 1227 chrX 5441988 5442008 chrX 5442096 5442116 6 108 2.0 1.0 1.5 2.4 128 chrX 5441988 intergenic not near genes chrX 5442052 intergenic not near genes chrX 5442116 intergenic not near genes chrX_6_5440001 chrX_5440001 RAL-358 1228 chrX 5884174 5884191 chrX 5884415 5884432 pogo 5 241 0.5 0.5 0.5 3.3 258 chrX 5884174 intron CR45668 - chrX 5884303 intron CR45668 - chrX 5884432 intron CR45668 - chrX_5_5880001 chrX_5880001 RAL-358 1229 chrX 6013550 6013570 chrX 6013748 6013768 8 198 16.5 14.0 15.2 0.5 218 chrX 6013550 intergenic CR44499 +,mab-21 - chrX 6013659 intergenic CR44499 +,mab-21 - chrX 6013768 5` UTR CR44499 + chrX_8_6010001 chrX_6010001 RAL-358 1230 chrX 6198395 6198397 chrX 6202248 6202248 4 3852 0.0 4.0 2.0 1.3 3853 chrX 6198395 exon CG32751 - chrX 6200322 3` UTR vanin-like - chrX 6202248 exon vanin-like - chrX_4_6200001 chrX_6200001 RAL-358 1231 chrX 6562817 6562850 chrX 6571299 6571332 Tirant 8 8482 2.0 0.0 1.0 4.0 8515 chrX 6562817 intron CG34417 + chrX 6567074 intron CG34417 + chrX 6571332 intron CG34417 + chrX_8_6565001 chrX_6565001 RAL-358 1232 chrX 7023612 7023632 chrX 7031001 7031022 Tabor 4 7390 2.0 5.0 3.5 0.9 7410 chrX 7023612 intron CG12541 - chrX 7027317 intron CG12541 - chrX 7031022 intron CG12541 - chrX_4_7025001 chrX_7025001 RAL-358 1233 chrX 7125243 7125257 chrX 7134402 7134416 roo 4 9159 1.5 1.0 1.2 1.8 9173 chrX 7125243 intergenic not near genes chrX 7129830 intergenic not near genes chrX 7134416 intergenic not near genes chrX_4_7125001 chrX_7125001 RAL-358 1234 chrX 7294514 7294540 chrX 7294612 7294637 7 97 1.0 1.0 1.0 3.5 123 chrX 7294514 intron,intron CR44357 -,CG1677 - chrX 7294576 intron,intron CR44357 -,CG1677 - chrX 7294637 intron,intron CR44357 -,CG1677 - chrX_7_7290001 chrX_7290001 RAL-358 1235 chrX 7784235 7784241 chrX 7784536 7784543 jockey 4 302 3.0 1.5 2.2 1.2 308 chrX 7784235 intergenic not near genes chrX 7784389 intergenic not near genes chrX 7784543 intergenic not near genes chrX_4_7780001 chrX_7780001 RAL-358 1236 chrX 7832432 7832462 chrX 7832521 7832551 5 89 1.5 0.0 0.8 2.8 119 chrX 7832432 intron CG1402 + chrX 7832492 intron CG1402 + chrX 7832551 intron CG1402 + chrX_5_7830001 chrX_7830001 RAL-358 1237 chrX 7845734 7845759 chrX 7847225 7847250 hopper2 7 1491 1.0 0.5 0.8 3.9 1516 chrX 7845734 intergenic not near genes chrX 7846492 intergenic not near genes chrX 7847250 intergenic not near genes chrX_7_7845001 chrX_7845001 RAL-358 1238 chrX 8948759 8948790 chrX 8956269 8956300 roo 4 7510 1.0 1.0 1.0 2.0 7541 chrX 8948759 intron rdgA + chrX 8952530 intron rdgA + chrX 8956300 intron rdgA + chrX_4_8950001 chrX_8950001 RAL-358 1239 chrX 9250060 9250090 chrX 9250244 9250274 8 184 1.0 0.5 0.8 4.4 214 chrX 9250060 intergenic Dsor1 +,CG17754 + chrX 9250167 intergenic Dsor1 +,CG17754 + chrX 9250274 intergenic CG17754 +,Dsor1 + chrX_8_9250001 chrX_9250001 RAL-358 1240 chrX 9508135 9508165 chrX 9509653 9509681 jockey 9 1518 2.5 2.0 2.2 2.8 1546 chrX 9508135 intron CG32700 - chrX 9508908 intron CG32700 - chrX 9509681 intron CG32700 - chrX_9_9505001 chrX_9505001 RAL-358 1241 chrX 9575791 9575824 chrX 9576115 9576148 mdg3 6 324 0.0 6.0 3.0 1.5 357 chrX 9575791 intron,exon CG32699 -,CG42395 - chrX 9575970 intron,intron CG32699 -,CG42395 - chrX 9576148 intron,5` UTR CG32699 -,CG42395 - chrX_6_9575001 chrX_9575001 RAL-358 1242 chrX 9617003 9617008 chrX 9617082 9617087 4 79 0.5 0.0 0.2 3.3 84 chrX 9617003 intron CG42797 + chrX 9617045 intron CG42797 + chrX 9617087 intron CG42797 + chrX_4_9615001 chrX_9615001 RAL-358 1243 chrX 10382661 10382678 chrX 10382743 10382760 9 82 0.5 1.5 1.0 4.5 99 chrX 10382661 exon CG17841 + chrX 10382710 3` UTR CG17841 + chrX 10382760 3` UTR CG17841 + chrX_9_10380001 chrX_10380001 RAL-358 1244 chrX 10532504 10532506 chrX 10532583 10532585 5 79 1.0 1.0 1.0 2.5 81 chrX 10532504 intron spri - chrX 10532544 intron spri - chrX 10532585 intron spri - chrX_5_10530001 chrX_10530001 RAL-358 1245 chrX 10686062 10686084 chrX 10691199 10691221 roo 7 5137 0.5 1.0 0.8 3.9 5159 chrX 10686062 intron X11Lbeta + chrX 10688642 intron X11Lbeta + chrX 10691221 intron X11Lbeta + chrX_7_10685001 chrX_10685001 RAL-358 1246 chrX 10772679 10772697 chrX 10772762 10772780 Tirant 5 83 2.0 0.5 1.2 2.3 101 chrX 10772679 intron CG15211 + chrX 10772730 intron CG15211 + chrX 10772780 intron CG15211 + chrX_5_10770001 chrX_10770001 RAL-358 1247 chrX 10977892 10977913 chrX 10977972 10977993 12 80 0.0 0.5 0.2 10.0 101 chrX 10977892 intron CG42339 - chrX 10977942 intron CG42339 - chrX 10977993 intron CG42339 - chrX_12_10975001 chrX_10975001 RAL-358 1248 chrX 11291707 11291721 chrX 11291789 11291803 7 81 1.0 3.5 2.2 2.2 96 chrX 11291707 intron CG44422 - chrX 11291755 intron CG44422 - chrX 11291803 intron CG44422 - chrX_7_11290001 chrX_11290001 RAL-358 1249 chrX 11312064 11312089 chrX 11319417 11319442 Stalker2 9 7353 2.0 1.5 1.8 3.2 7378 chrX 11312064 intergenic not near genes chrX 11315753 intergenic not near genes chrX 11319442 intergenic not near genes chrX_9_11315001 chrX_11315001 RAL-358 1250 chrX 11719876 11719901 chrX 11719956 11719981 4 80 1.0 0.5 0.8 2.2 105 chrX 11719876 3` UTR prtp + chrX 11719928 intergenic prtp +,Tango10 + chrX 11719981 intergenic prtp +,Tango10 + chrX_4_11715001 chrX_11715001 RAL-358 1251 chrX 11839036 11839065 chrX 11839283 11839313 5 248 0.0 1.5 0.8 2.8 277 chrX 11839036 intergenic not near genes chrX 11839174 intergenic Cyp28c1 + chrX 11839313 intergenic Cyp28c1 + chrX_5_11835001 chrX_11835001 RAL-358 1252 chrX 12094035 12094066 chrX 12094127 12094158 5 92 2.5 5.0 3.8 1.0 123 chrX 12094035 intron,intron CR43960 +,Ten-a + chrX 12094096 intron,intron CR43960 +,Ten-a + chrX 12094158 intron,intron CR43960 +,Ten-a + chrX_5_12090001 chrX_12090001 RAL-358 1253 chrX 12168139 12168160 chrX 12173581 12173602 I-element 6 5442 2.5 1.0 1.8 2.1 5463 chrX 12168139 intron Ten-a + chrX 12170870 intron Ten-a + chrX 12173602 intron Ten-a + chrX_6_12170001 chrX_12170001 RAL-358 1254 chrX 12176752 12176769 chrX 12176828 12176845 4 76 2.0 1.0 1.5 1.6 93 chrX 12176752 intron,3` UTR Ten-a +,CG1924 - chrX 12176798 intron,3` UTR Ten-a +,CG1924 - chrX 12176845 intron,3` UTR Ten-a +,CG1924 - chrX_4_12175001 chrX_12175001 RAL-358 1255 chrX 12202784 12202793 chrX 12202868 12202877 4 84 1.0 0.5 0.8 2.2 93 chrX 12202784 intron Ten-a + chrX 12202830 intron Ten-a + chrX 12202877 intron Ten-a + chrX_4_12200001 chrX_12200001 RAL-358 1256 chrX 12272846 12272852 chrX 12272925 12272931 6 79 2.0 1.5 1.8 2.1 85 chrX 12272846 intron Ten-a + chrX 12272888 intron Ten-a + chrX 12272931 intron Ten-a + chrX_6_12270001 chrX_12270001 RAL-358 1257 chrX 12350779 12350805 chrX 12350860 12350880 6 80 2.0 0.0 1.0 3.0 101 chrX 12350779 intergenic not near genes chrX 12350830 intergenic not near genes chrX 12350880 intergenic not near genes chrX_6_12350001 chrX_12350001 RAL-358 1258 chrX 11109417 11109417 chrX 12946234 12946234 4 1836817 3.5 2.0 2.8 1.1 1836817 chrX 11109417 intron Hsp60 + chrX 12027826 exon Usp7 - chrX 12946234 3` UTR fne + chrX_4_12025001 chrX_12025001 RAL-358 1259 chrX 13146615 13146622 chrX 13146703 13146710 4 88 2.5 1.5 2.0 1.3 95 chrX 13146615 intron CG32645 + chrX 13146662 intron CG32645 + chrX 13146710 intron CG32645 + chrX_4_13145001 chrX_13145001 RAL-358 1260 chrX 13374841 13374865 chrX 13374921 13374945 4 80 1.5 1.5 1.5 1.6 104 chrX 13374841 intron CG1640 + chrX 13374893 intron CG1640 + chrX 13374945 intron CG1640 + chrX_4_13370001 chrX_13370001 RAL-358 1261 chrX 13975879 13975908 chrX 13975956 13975983 5 77 0.0 2.5 1.2 2.3 104 chrX 13975879 intron mamo - chrX 13975931 intron mamo - chrX 13975983 intron mamo - chrX_5_13975001 chrX_13975001 RAL-358 1262 chrX 14105032 14105044 chrX 14114183 14114192 roo 4 9150 1.5 1.0 1.2 1.8 9160 chrX 14105032 intergenic not near genes chrX 14109612 intergenic not near genes chrX 14114192 5` UTR CR44657 + chrX_4_14105001 chrX_14105001 RAL-358 1263 chrX 14219511 14219526 chrX 14219592 14219607 4 81 0.5 1.5 1.0 2.0 96 chrX 14219511 intron l(1)G0007 + chrX 14219559 intron l(1)G0007 + chrX 14219607 intron l(1)G0007 + chrX_4_14215001 chrX_14215001 RAL-358 1264 chrX 14531358 14531373 chrX 14531447 14531461 4 89 2.5 1.0 1.8 1.4 103 chrX 14531358 intergenic not near genes chrX 14531410 intergenic not near genes chrX 14531461 intergenic not near genes chrX_4_14530001 chrX_14530001 RAL-358 1265 chrX 14636472 14636490 chrX 14641912 14641931 I-element 8 5440 1.5 0.0 0.8 4.4 5459 chrX 14636472 intron NetA - chrX 14639202 intron NetA - chrX 14641931 intron NetA - chrX_8_14635001 chrX_14635001 RAL-358 1266 chrX 14778037 14778058 chrX 14782834 14782855 Doc 4 4797 1.5 3.5 2.5 1.1 4818 chrX 14778037 intergenic CG5347 + chrX 14780446 intergenic not near genes chrX 14782855 intergenic Ag5r2 - chrX_4_14780001 chrX_14780001 RAL-358 1267 chrX 14818770 14818790 chrX 14823972 14823993 copia 5 5202 3.5 1.5 2.5 1.4 5223 chrX 14818770 intron rut - chrX 14821382 intron rut - chrX 14823993 intron rut - chrX_5_14820001 chrX_14820001 RAL-358 1268 chrX 14936860 14936889 chrX 14946116 14946146 roo 8 9257 2.0 0.5 1.2 3.6 9286 chrX 14936860 intron pdgy - chrX 14941503 intron pdgy - chrX 14946146 intron pdgy - chrX_8_14940001 chrX_14940001 RAL-358 1269 chrX 15421923 15421952 chrX 15423433 15423462 pogo 8 1510 0.5 0.5 0.5 5.3 1539 chrX 15421923 intron Cngl - chrX 15422692 intron Cngl - chrX 15423462 intron Cngl - chrX_8_15420001 chrX_15420001 RAL-358 1270 chrX 15531395 15531421 chrX 15531477 15531504 4 83 4.0 2.0 3.0 1.0 109 chrX 15531395 intron Ac13E - chrX 15531450 intron Ac13E - chrX 15531504 intron Ac13E - chrX_4_15530001 chrX_15530001 RAL-358 1271 chrX 15561950 15561979 chrX 15562030 15562059 8 80 0.0 1.5 0.8 4.4 109 chrX 15561950 intergenic not near genes chrX 15562004 intergenic not near genes chrX 15562059 intergenic not near genes chrX_8_15560001 chrX_15560001 RAL-358 1272 chrX 16214527 16214536 chrX 16215034 16215043 4 506 4.5 1.0 2.8 1.1 516 chrX 16214527 intron disco - chrX 16214785 intron disco - chrX 16215043 intron disco - chrX_4_16210001 chrX_16210001 RAL-358 1273 chrX 16492644 16492679 chrX 16498221 16498256 mdg3 14 5577 2.0 1.0 1.5 5.6 5612 chrX 16492644 intron para - chrX 16495450 intron para - chrX 16498256 intron para - chrX_14_16495001 chrX_16495001 RAL-358 1274 chrX 17089601 17089619 chrX 17089727 17089745 4 126 1.5 0.5 1.0 2.0 144 chrX 17089601 intergenic not near genes chrX 17089673 intergenic not near genes chrX 17089745 intergenic not near genes chrX_4_17085001 chrX_17085001 RAL-358 1275 chrX 17435773 17435786 chrX 17435849 17435862 5 76 0.5 1.5 1.0 2.5 89 chrX 17435773 intron CG12994 - chrX 17435818 intron CG12994 - chrX 17435862 intron CG12994 - chrX_5_17435001 chrX_17435001 RAL-358 1276 chrX 17609544 17609565 chrX 17609968 17609989 6 425 1.0 1.5 1.2 2.7 445 chrX 17609544 intergenic not near genes chrX 17609766 intergenic not near genes chrX 17609989 intergenic not near genes chrX_6_17605001 chrX_17605001 RAL-358 1277 chrX 17968900 17968929 chrX 17969018 17969047 6 118 1.0 1.5 1.2 2.7 147 chrX 17968900 intron Sh - chrX 17968974 intron Sh - chrX 17969047 intron Sh - chrX_6_17965001 chrX_17965001 RAL-358 1278 chrX 18122824 18122842 chrX 18122900 18122916 5 75 1.5 0.5 1.0 2.5 92 chrX 18122824 5` UTR CR45606 + chrX 18122870 5` UTR CR45606 + chrX 18122916 5` UTR CR45606 + chrX_5_18120001 chrX_18120001 RAL-358 1279 chrX 18194082 18194096 chrX 18194617 18194631 BS 7 535 1.5 1.5 1.5 2.8 549 chrX 18194082 intron Frq2 + chrX 18194356 intron Frq2 + chrX 18194631 intron Frq2 + chrX_7_18190001 chrX_18190001 RAL-358 1280 chrX 18453613 18453613 chrX 18453687 18453689 5 76 0.5 1.0 0.8 2.8 76 chrX 18453613 intron CG32547 - chrX 18453651 intron CG32547 - chrX 18453689 intron CG32547 - chrX_5_18450001 chrX_18450001 RAL-358 1281 chrX 18467224 18467251 chrX 18467388 18467415 4 164 2.5 3.0 2.8 1.1 191 chrX 18467224 intron CG32547 - chrX 18467320 intron CG32547 - chrX 18467415 intron CG32547 - chrX_4_18465001 chrX_18465001 RAL-358 1282 chrX 18645012 18645047 chrX 18645110 18645145 7 98 0.0 0.0 0.0 7.0 133 chrX 18645012 intron Rip11 - chrX 18645078 intron Rip11 - chrX 18645145 intron Rip11 - chrX_7_18645001 chrX_18645001 RAL-358 1283 chrX 18698847 18698873 chrX 18698964 18698990 5 117 3.5 1.5 2.5 1.4 143 chrX 18698847 intergenic not near genes chrX 18698918 intergenic not near genes chrX 18698990 intergenic not near genes chrX_5_18695001 chrX_18695001 RAL-358 1284 chrX 18910399 18910406 chrX 18910489 18910495 4 90 0.0 1.0 0.5 2.7 96 chrX 18910399 3` UTR CG7378 + chrX 18910447 3` UTR CG7378 + chrX 18910495 3` UTR CG7378 + chrX_4_18910001 chrX_18910001 RAL-358 1285 chrX 18957072 18957095 chrX 18965735 18965758 roo 6 8662 0.0 0.5 0.2 5.0 8686 chrX 18957072 intron CG43759 + chrX 18961415 intron CG43759 + chrX 18965758 intron CG43759 + chrX_6_18960001 chrX_18960001 RAL-358 1286 chrX 19080325 19080562 chrX 19080431 19080648 15 95 1.0 1.5 1.2 6.8 323 chrX 19080325 intergenic not near genes chrX 19080486 intergenic not near genes chrX 19080648 intergenic not near genes chrX_15_19080001 chrX_19080001 RAL-358 1287 chrX 19099656 19099674 chrX 19099738 19099757 4 82 1.5 1.5 1.5 1.6 101 chrX 19099656 intergenic not near genes chrX 19099706 intergenic not near genes chrX 19099757 intergenic not near genes chrX_4_19095001 chrX_19095001 RAL-358 1288 chrX 19106025 19106046 chrX 19106242 19106263 8 217 2.0 0.0 1.0 4.0 238 chrX 19106025 intergenic not near genes chrX 19106144 intergenic not near genes chrX 19106263 intergenic not near genes chrX_8_19105001 chrX_19105001 RAL-358 1289 chrX 19125697 19125719 chrX 19125826 19125845 6 128 0.5 1.0 0.8 3.3 148 chrX 19125697 intron tgy - chrX 19125771 intron tgy - chrX 19125845 intron tgy - chrX_6_19125001 chrX_19125001 RAL-358 1290 chrX 19176208 19176235 chrX 19176292 19176319 13 84 1.0 4.5 2.8 3.4 111 chrX 19176208 3` UTR CG7556 - chrX 19176264 3` UTR CG7556 - chrX 19176319 3` UTR CG7556 - chrX_13_19175001 chrX_19175001 RAL-358 1291 chrX 19185558 19185565 chrX 19185654 19185661 4 96 0.0 2.0 1.0 2.0 103 chrX 19185558 intron CG33253 + chrX 19185610 intron CG33253 + chrX 19185661 intron CG33253 + chrX_4_19185001 chrX_19185001 RAL-358 1292 chrX 13057298 13057300 chrX 19242812 19242814 14 6185514 4.5 7.0 5.8 2.1 6185516 chrX 13057298 intron rad + chrX 16150056 intergenic not near genes chrX 19242814 intergenic not near genes chrX_14_16150001 chrX_16150001 RAL-358 1293 chrX 16983076 16983077 chrX 19404963 19404964 4 2421887 1.5 4.5 3.0 1.0 2421888 chrX 16983076 intron CG45002 - chrX 18194020 intron Frq2 + chrX 19404964 intron kek5 + chrX_4_18190001 chrX_18190001 RAL-358 1294 chrX 19458532 19458544 chrX 19458803 19458815 6 271 1.0 0.0 0.5 4.0 283 chrX 19458532 intron kek5 + chrX 19458674 intron kek5 + chrX 19458815 intron kek5 + chrX_6_19455001 chrX_19455001 RAL-358 1295 chrX 19674233 19674241 chrX 19674316 19674324 4 83 2.0 2.5 2.2 1.2 91 chrX 19674233 intron et - chrX 19674278 intron et - chrX 19674324 intron et - chrX_4_19670001 chrX_19670001 RAL-358 1296 chrX 19710085 19710103 chrX 19711870 19711889 S-element 5 1786 1.5 1.5 1.5 2.0 1804 chrX 19710085 intron meso18E - chrX 19710987 intron meso18E - chrX 19711889 intron meso18E - chrX_5_19710001 chrX_19710001 RAL-358 1297 chrX 19984540 19984560 chrX 19984624 19984644 5 84 1.5 0.0 0.8 2.8 104 chrX 19984540 intergenic not near genes chrX 19984592 intergenic not near genes chrX 19984644 intergenic not near genes chrX_5_19980001 chrX_19980001 RAL-358 1298 chrX 19992415 19992435 chrX 19992491 19992511 5 76 2.0 3.5 2.8 1.3 96 chrX 19992415 intergenic not near genes chrX 19992463 intergenic not near genes chrX 19992511 intergenic not near genes chrX_5_19990001 chrX_19990001 RAL-358 1299 chrX 20144303 20144310 chrX 20144383 20144390 6 80 0.0 3.5 1.8 2.1 87 chrX 20144303 intergenic not near genes chrX 20144346 intergenic not near genes chrX 20144390 intergenic not near genes chrX_6_20140001 chrX_20140001 RAL-358 1300 chrX 20312880 20312902 chrX 20312958 20312980 8 78 2.0 0.0 1.0 4.0 100 chrX 20312880 intron CG1504 - chrX 20312930 intron CG1504 - chrX 20312980 intron CG1504 - chrX_8_20310001 chrX_20310001 RAL-358 1301 chrX 20374104 20374124 chrX 20374180 20374199 4 76 0.5 1.0 0.8 2.2 95 chrX 20374104 intergenic not near genes chrX 20374152 intergenic not near genes chrX 20374199 intergenic not near genes chrX_4_20370001 chrX_20370001 RAL-358 1302 chrX 20377325 20377349 chrX 20378792 20378816 hobo 4 1467 3.0 1.0 2.0 1.3 1491 chrX 20377325 intergenic not near genes chrX 20378070 intergenic not near genes chrX 20378816 intergenic not near genes chrX_4_20375001 chrX_20375001 RAL-358 1303 chrX 20426178 20426211 chrX 20428373 20428406 5 2194 18.5 9.5 14.0 0.3 2228 chrX 20426178 exon cactin + chrX 20427292 intergenic CG11710 -,CG15456 - chrX 20428406 exon CG11710 - chrX_5_20425001 chrX_20425001 RAL-358 1304 chrX 20468016 20468038 chrX 20468105 20468127 9 89 0.0 0.0 0.0 9.0 111 chrX 20468016 intron GstT3 + chrX 20468072 intron GstT3 + chrX 20468127 intron GstT3 + chrX_9_20465001 chrX_20465001 RAL-358 1305 chrX 20493910 20493926 chrX 20494071 20494086 4 161 0.0 0.0 0.0 4.0 176 chrX 20493910 intron RhoGAP19D - chrX 20493998 intron RhoGAP19D - chrX 20494086 intron RhoGAP19D - chrX_4_20490001 chrX_20490001 RAL-358 1306 chrX 20504124 20504154 chrX 20505645 20505675 transib2 9 1520 0.5 1.5 1.0 4.5 1551 chrX 20504124 intron RhoGAP19D - chrX 20504900 intron RhoGAP19D - chrX 20505675 intron RhoGAP19D - chrX_9_20500001 chrX_20500001 RAL-358 1307 chrX 20517247 20517255 chrX 20517332 20517340 7 86 3.0 0.0 1.5 2.8 93 chrX 20517247 intron Tak1 - chrX 20517294 intron Tak1 - chrX 20517340 intron Tak1 - chrX_7_20515001 chrX_20515001 RAL-358 1308 chrX 20546560 20546560 chrX 20546724 20546726 4 165 0.0 0.0 0.0 4.0 166 chrX 20546560 intron RunxB + chrX 20546643 intron RunxB + chrX 20546726 intron RunxB + chrX_4_20545001 chrX_20545001 RAL-358 1309 chrX 20836732 20836757 chrX 20844334 20844359 roo 5 7602 0.5 0.0 0.2 4.2 7627 chrX 20836732 intron shakB - chrX 20840546 intron shakB - chrX 20844359 intron shakB - chrX_5_20840001 chrX_20840001 RAL-358 1310 chrX 20940732 20940749 chrX 20942201 20942217 hobo 5 1469 4.0 1.0 2.5 1.4 1485 chrX 20940732 intergenic not near genes chrX 20941474 intergenic not near genes chrX 20942217 intergenic not near genes chrX_5_20940001 chrX_20940001 RAL-358 1311 chrX 21029163 21029164 chrX 21029378 21029380 4 216 0.0 2.0 1.0 2.0 217 chrX 21029163 3` UTR CG1529 - chrX 21029272 3` UTR CG1529 - chrX 21029380 3` UTR CG1529 - chrX_4_21025001 chrX_21025001 RAL-358 1312 chrX 21088061 21088070 chrX 21088193 21088202 4 132 0.5 0.5 0.5 2.7 141 chrX 21088061 intergenic not near genes chrX 21088132 intergenic not near genes chrX 21088202 intergenic not near genes chrX_4_21085001 chrX_21085001 RAL-358 1313 chrX 21092660 21092681 chrX 21092738 21092759 5 76 0.5 0.5 0.5 3.3 99 chrX 21092660 intergenic not near genes chrX 21092710 intergenic not near genes chrX 21092759 intergenic not near genes chrX_5_21090001 chrX_21090001 RAL-358 1314 chrX 21419715 21419737 chrX 21419803 21419826 4 89 2.0 3.0 2.5 1.1 111 chrX 21419715 intergenic not near genes chrX 21419770 intergenic not near genes chrX 21419826 intergenic not near genes chrX_4_21415001 chrX_21415001 RAL-358 1315 chrX 21458700 21458718 chrX 21464135 21464154 Ivk 10 5436 5.0 1.0 3.0 2.5 5454 chrX 21458700 intergenic not near genes chrX 21461427 intergenic not near genes chrX 21464154 intergenic not near genes chrX_10_21460001 chrX_21460001 RAL-358 1316 chrX 21516985 21517006 chrX 21517064 21517083 5 78 2.5 1.5 2.0 1.7 98 chrX 21516985 intron CR45082 - chrX 21517034 intron CR45082 - chrX 21517083 intron CR45082 - chrX_5_21515001 chrX_21515001 RAL-358 1317 chrX 22661962 22661973 chrX 22662043 22662054 5 81 0.0 1.0 0.5 3.3 92 chrX 22661962 intron CR44997 + chrX 22662008 intron CR44997 + chrX 22662054 intron CR44997 + chrX_5_22660001 chrX_22660001 RAL-358 1318 chrX 22697497 22697514 chrX 22701794 22701811 Juan 4 4297 2.0 2.5 2.2 1.2 4314 chrX 22697497 intron CR44997 + chrX 22699654 intron CR44997 + chrX 22701811 intron CR44997 + chrX_4_22695001 chrX_22695001 RAL-358 1319 chrX 22776374 22776376 chrX 22776662 22776663 4 288 0.0 5.0 2.5 1.1 289 chrX 22776374 intron CR44997 + chrX 22776518 intron CR44997 + chrX 22776663 intron CR44997 + chrX_4_22775001 chrX_22775001 RAL-358 1320 chrX 22824234 22824450 chrX 22824360 22824582 8 129 1.0 1.0 1.0 4.0 348 chrX 22824234 intergenic fog - chrX 22824408 3` UTR fog - chrX 22824582 3` UTR fog - chrX_8_22820001 chrX_22820001 RAL-358 1321 chrX 22895725 22895739 chrX 22895843 22895856 7 118 3.0 1.0 2.0 2.3 131 chrX 22895725 intergenic not near genes chrX 22895790 intergenic not near genes chrX 22895856 intergenic not near genes chrX_7_22895001 chrX_22895001 RAL-358 1322 chrX 22987104 22987135 chrX 22989763 22989794 Burdock 5 2658 0.5 0.0 0.2 4.2 2690 chrX 22987104 intron,intron stnA -,stnB - chrX 22988449 intron,intron stnA -,stnB - chrX 22989794 intron,intron stnA -,stnB - chrX_5_22985001 chrX_22985001 RAL-358 1323 chrY 975797 975818 chrY 975876 975898 4 80 66.5 71.0 68.8 0.1 101 chrY 975797 intergenic not near genes chrY 975848 intergenic not near genes chrY 975898 intergenic not near genes chrY_4_975001 chrY_975001 RAL-358