SV#	Chr_5p	Chr_coord_5p_start	Chr_coord_5p_end	Chr_3p	Chr_coord_3p_start	Chr_coord_3p_end	repName	Reads_collapsed	avg_del_len	RefGen_3prime	Refgen_5prime	RefGen_Avg	Coverage_Ratio	size	Chr_5p	Chr_coord_5p	classification_5p	comment_5p	Chr_mid	Chr_coord_mid	classification_mid	comment_mid	Chr_3p	Chr_coord_3p	classification_3p	comment_3p	depletion_code	loci_code	libname
1	chr2L	47475	47491	chr2L	52562	52596	jockey	9	5096	9.0	6.0	7.5	1.1	5121	chr2L	47475	intron	Cda5 -	chr2L	50036	intron	Cda5 -	chr2L	52596	intron	Cda5 -	chr2L_9_50001	chr2L_50001	RAL-356
4	chr2L	347897	347917	chr2L	355388	355417	blood	6	7488	1.5	1.5	1.5	2.4	7520	chr2L	347897	3` UTR	Plc21C +	chr2L	351657	intron	Plc21C +	chr2L	355417	3` UTR	Plc21C +	chr2L_6_350001	chr2L_350001	RAL-356
7	chr2L	686928	686950	chr2L	695958	695984	roo	8	9031	3.5	2.0	2.8	2.1	9056	chr2L	686928	intron	ds -	chr2L	691456	intron	ds -	chr2L	695984	intron	ds -	chr2L_8_690001	chr2L_690001	RAL-356
9	chr2L	770476	770494	chr2L	772246	772249	Bari1	4	1770	4.0	1.5	2.8	1.1	1773	chr2L	770476	intergenic	not near genes	chr2L	771362	intergenic	not near genes	chr2L	772249	intergenic	CR44614 +	chr2L_4_770001	chr2L_770001	RAL-356
14	chr2L	1220139	1220158	chr2L	1227602	1227605	blood	4	7460	6.0	3.0	4.5	0.7	7466	chr2L	1220139	intron	CG42329 +	chr2L	1223872	intron	CG42329 +	chr2L	1227605	intron	CG42329 +	chr2L_4_1220001	chr2L_1220001	RAL-356
18	chr2L	1570698	1570721	chr2L	1573570	1573578	F-element	7	2864	3.5	3.0	3.2	1.7	2880	chr2L	1570698	intron	haf +	chr2L	1572138	intron	haf +	chr2L	1573578	intron	haf +	chr2L_7_1570001	chr2L_1570001	RAL-356
19	chr2L	1678985	1679006	chr2L	1686445	1686445	blood	5	7454	0.5	4.0	2.2	1.6	7460	chr2L	1678985	intron	chinmo +	chr2L	1682715	intron	chinmo +	chr2L	1686445	intron	chinmo +	chr2L_5_1680001	chr2L_1680001	RAL-356
20	chr2L	1711360	1711386	chr2L	1711678	1711710	mdg3	13	317	5.0	4.0	4.5	2.4	350	chr2L	1711360	3` UTR,3` UTR	mRpL48 +,frtz -	chr2L	1711535	3` UTR	frtz -	chr2L	1711710	3` UTR	frtz -	chr2L_13_1710001	chr2L_1710001	RAL-356
24	chr2L	2100380	2100392	chr2L	2109527	2109542	roo	4	9146	9.0	4.0	6.5	0.5	9162	chr2L	2100380	intron	dpr3 -	chr2L	2104961	intron	dpr3 -	chr2L	2109542	intron	dpr3 -	chr2L_4_2100001	chr2L_2100001	RAL-356
25	chr2L	2100394	2100402	chr2L	2109523	2109553	roo	4	9143	7.0	3.5	5.2	0.6	9159	chr2L	2100394	intron	dpr3 -	chr2L	2104974	intron	dpr3 -	chr2L	2109553	intron	dpr3 -	chr2L_4_2100001	chr2L_2100001	RAL-356
26	chr2L	2112128	2112144	chr2L	2119777	2119798	opus	6	7650	3.5	3.0	3.2	1.4	7670	chr2L	2112128	intergenic	not near genes	chr2L	2115963	intergenic	not near genes	chr2L	2119798	intergenic	not near genes	chr2L_6_2115001	chr2L_2115001	RAL-356
29	chr2L	2661218	2661222	chr2L	2663032	2663043	I-element	4	1821	2.5	0.5	1.5	1.6	1825	chr2L	2661218	intergenic	not near genes	chr2L	2662130	intergenic	not near genes	chr2L	2663043	intergenic	not near genes	chr2L_4_2660001	chr2L_2660001	RAL-356
30	chr2L	2661224	2661231	chr2L	2663030	2663066	I-element	4	1824	1.5	0.0	0.8	2.2	1842	chr2L	2661224	intergenic	not near genes	chr2L	2662145	intergenic	not near genes	chr2L	2663066	intergenic	not near genes	chr2L_4_2660001	chr2L_2660001	RAL-356
33	chr2L	2933314	2933324	chr2L	2935478	2935481	pogo	8	2170	2.5	4.5	3.5	1.8	2167	chr2L	2933314	intron	lilli +	chr2L	2934398	intron	lilli +	chr2L	2935481	intron	lilli +	chr2L_8_2930001	chr2L_2930001	RAL-356
34	chr2L	3073037	3073061	chr2L	3078240	3078261	copia	8	5198	2.0	3.0	2.5	2.3	5224	chr2L	3073037	intron	toc -	chr2L	3075649	intron	toc -	chr2L	3078261	intron	toc -	chr2L_8_3075001	chr2L_3075001	RAL-356
42	chr2L	4066046	4066060	chr2L	4068862	4068875	Juan	5	2819	2.5	4.5	3.5	1.1	2829	chr2L	4066046	intron	ed +	chr2L	4067460	intron	ed +	chr2L	4068875	intron	ed +	chr2L_5_4065001	chr2L_4065001	RAL-356
45	chr2L	4181295	4181304	chr2L	4183913	4183920	Burdock	5	2624	4.0	4.5	4.2	1.0	2625	chr2L	4181295	intergenic	not near genes	chr2L	4182608	intergenic	not near genes	chr2L	4183920	intergenic	not near genes	chr2L_5_4180001	chr2L_4180001	RAL-356
47	chr2L	4601713	4601736	chr2L	4609145	4609157	mdg1	5	7430	3.0	3.5	3.2	1.2	7444	chr2L	4601713	intron	dp -	chr2L	4605435	intron	dp -	chr2L	4609157	intron	dp -	chr2L_5_4605001	chr2L_4605001	RAL-356
52	chr2L	4953532	4953541	chr2L	4953773	4953777	pogo	4	238	1.5	0.0	0.8	2.2	245	chr2L	4953532	intergenic	Jon25Bii -	chr2L	4953654	intergenic	not near genes	chr2L	4953777	intergenic	not near genes	chr2L_4_4950001	chr2L_4950001	RAL-356
60	chr2L	5827713	5827739	chr2L	5836713	5836728	roo	9	8997	5.0	4.5	4.8	1.6	9015	chr2L	5827713	intron	TrissinR +	chr2L	5832220	intron	TrissinR +	chr2L	5836728	intron	TrissinR +	chr2L_9_5830001	chr2L_5830001	RAL-356
66	chr2L	6426869	6426889	chr2L	6445113	6445131	roo	6	18245	1.5	2.5	2.0	2.0	18262	chr2L	6426869	3` UTR	CG9527 -	chr2L	6436000	intron	CG9527 -	chr2L	6445131	exon	CG9527 -	chr2L_6_6435001	chr2L_6435001	RAL-356
73	chr2L	6876779	6876806	chr2L	6882969	6882980	diver	4	6181	8.5	3.5	6.0	0.6	6201	chr2L	6876779	intron	Nlg2 +	chr2L	6879880	intron	Nlg2 +	chr2L	6882980	intron	Nlg2 +	chr2L_4_6875001	chr2L_6875001	RAL-356
74	chr2L	7343327	7343358	chr2L	7350440	7350474	roo	11	7106	5.0	2.5	3.8	2.3	7147	chr2L	7343327	intron	Wnt6 +	chr2L	7346900	intron	Wnt6 +	chr2L	7350474	intron	Wnt6 +	chr2L_11_7345001	chr2L_7345001	RAL-356
78	chr2L	7959048	7959073	chr2L	7960457	7960484	pogo	8	1404	2.5	3.5	3.0	2.0	1436	chr2L	7959048	intron	Snoo -	chr2L	7959766	intron	Snoo -	chr2L	7960484	intron	Snoo -	chr2L_8_7955001	chr2L_7955001	RAL-356
79	chr2L	8013618	8013644	chr2L	8018823	8018826	copia	7	5200	3.5	0.0	1.8	2.5	5208	chr2L	8013618	intron	Tg +	chr2L	8016222	intron	Tg +	chr2L	8018826	intron	Tg +	chr2L_7_8015001	chr2L_8015001	RAL-356
84	chr2L	8723129	8723148	chr2L	8731491	8731504	Tirant	4	8364	2.5	2.0	2.2	1.2	8375	chr2L	8723129	intron	raw -	chr2L	8727316	intron	raw -	chr2L	8731504	intron	raw -	chr2L_4_8725001	chr2L_8725001	RAL-356
89	chr2L	9000299	9000311	chr2L	9007791	9007799	roo	6	7496	2.0	0.0	1.0	3.0	7500	chr2L	9000299	intergenic	Try29F +	chr2L	9004049	intergenic	not near genes	chr2L	9007799	intergenic	not near genes	chr2L_6_9000001	chr2L_9000001	RAL-356
97	chr2L	9393498	9393528	chr2L	9396463	9396507	jockey	4	2968	1.5	0.0	0.8	2.2	3009	chr2L	9393498	intron	Shawl -	chr2L	9395002	intron	Shawl -	chr2L	9396507	intron	Shawl -	chr2L_4_9390001	chr2L_9390001	RAL-356
103	chr2L	9973746	9973759	chr2L	9980843	9980864	HMS-Beagle	8	7107	8.0	7.0	7.5	0.9	7118	chr2L	9973746	intergenic	not near genes	chr2L	9977305	intergenic	not near genes	chr2L	9980864	intergenic	not near genes	chr2L_8_9975001	chr2L_9975001	RAL-356
107	chr2L	10156343	10156355	chr2L	10163790	10163811	blood	7	7457	1.5	3.5	2.5	2.0	7468	chr2L	10156343	intron,3` UTR	CG44153 -,CG4839 +	chr2L	10160077	intron	CG44153 -	chr2L	10163811	intron	CG44153 -	chr2L_7_10160001	chr2L_10160001	RAL-356
110	chr2L	10862862	10862876	chr2L	10864455	10864466	Rt1c	8	1595	3.5	5.5	4.5	1.5	1604	chr2L	10862862	3` UTR	CR43807 -	chr2L	10863664	intron	CR43807 -	chr2L	10864466	3` UTR	CR43807 -	chr2L_8_10860001	chr2L_10860001	RAL-356
113	chr2L	10946956	10946972	chr2L	10956165	10956175	roo	10	9208	3.5	8.0	5.8	1.5	9219	chr2L	10946956	intron	dpr2 -	chr2L	10951566	intron	dpr2 -	chr2L	10956175	intron	dpr2 -	chr2L_10_10950001	chr2L_10950001	RAL-356
120	chr2L	11614078	11614086	chr2L	11615550	11615572	hopper2	4	1482	2.5	4.5	3.5	0.9	1494	chr2L	11614078	intron	kek2 +	chr2L	11614825	intron	kek2 +	chr2L	11615572	intron	kek2 +	chr2L_4_11610001	chr2L_11610001	RAL-356
126	chr2L	12731069	12731093	chr2L	12735827	12735841	F-element	6	4760	3.0	1.5	2.2	1.9	4772	chr2L	12731069	intron	MRP +	chr2L	12733455	intron	MRP +	chr2L	12735841	intron	MRP +	chr2L_6_12730001	chr2L_12730001	RAL-356
128	chr2L	12739189	12739196	chr2L	12743952	12743977	Doc	6	4774	3.5	5.0	4.2	1.2	4788	chr2L	12739189	intron	MRP +	chr2L	12741583	intron	MRP +	chr2L	12743977	intron	MRP +	chr2L_6_12740001	chr2L_12740001	RAL-356
130	chr2L	12791620	12791640	chr2L	12795278	12795291	F-element	4	3665	2.0	2.0	2.0	1.3	3671	chr2L	12791620	intergenic	not near genes	chr2L	12793456	intergenic	not near genes	chr2L	12795291	intergenic	not near genes	chr2L_4_12790001	chr2L_12790001	RAL-356
131	chr2L	12861703	12861731	chr2L	12863159	12863198	hobo	15	1457	3.5	3.0	3.2	3.6	1495	chr2L	12861703	intergenic	not near genes	chr2L	12862450	intergenic	not near genes	chr2L	12863198	intergenic	not near genes	chr2L_15_12860001	chr2L_12860001	RAL-356
132	chr2L	12933857	12933881	chr2L	12941323	12941348	blood	7	7465	5.5	6.0	5.8	1.0	7491	chr2L	12933857	intergenic	not near genes	chr2L	12937602	intergenic	not near genes	chr2L	12941348	intergenic	not near genes	chr2L_7_12935001	chr2L_12935001	RAL-356
134	chr2L	13405648	13405682	chr2L	13410445	13410479	Doc	8	4792	3.5	2.5	3.0	2.0	4831	chr2L	13405648	exon	CG7110 +	chr2L	13408064	intron	CG7110 +	chr2L	13410479	intron	CG7110 +	chr2L_8_13405001	chr2L_13405001	RAL-356
136	chr2L	13481460	13481471	chr2L	13482067	13482068	jockey	4	604	5.0	5.5	5.2	0.6	608	chr2L	13481460	intron	CG42784 +	chr2L	13481764	intron	CG42784 +	chr2L	13482068	intron	CG42784 +	chr2L_4_13480001	chr2L_13480001	RAL-356
142	chr2L	13853091	13853115	chr2L	13862233	13862248	roo	4	9142	2.5	1.0	1.8	1.4	9157	chr2L	13853091	intron	CenG1A +	chr2L	13857670	intron	CenG1A +	chr2L	13862248	intron	CenG1A +	chr2L_4_13855001	chr2L_13855001	RAL-356
145	chr2L	14642591	14642604	chr2L	14651734	14651765	roo	7	9154	0.5	1.0	0.8	3.9	9174	chr2L	14642591	intron	osp -	chr2L	14647178	intron	osp -	chr2L	14651765	intron	osp -	chr2L_7_14645001	chr2L_14645001	RAL-356
148	chr2L	14803888	14803905	chr2L	14809088	14809098	copia	6	5197	5.0	6.5	5.8	0.9	5210	chr2L	14803888	intergenic	not near genes	chr2L	14806493	intergenic	not near genes	chr2L	14809098	intergenic	not near genes	chr2L_6_14805001	chr2L_14805001	RAL-356
150	chr2L	14889963	14889984	chr2L	14890378	14890394	jockey	9	414	1.0	2.5	1.8	3.2	431	chr2L	14889963	intergenic	not near genes	chr2L	14890178	intergenic	not near genes	chr2L	14890394	intergenic	not near genes	chr2L_9_14890001	chr2L_14890001	RAL-356
154	chr2L	15586417	15586439	chr2L	15593469	15593479	297	5	7049	1.0	2.5	1.8	1.8	7062	chr2L	15586417	intergenic	not near genes	chr2L	15589948	intergenic	not near genes	chr2L	15593479	intergenic	not near genes	chr2L_5_15585001	chr2L_15585001	RAL-356
157	chr2L	15956046	15956058	chr2L	15957490	15957525	hobo	8	1455	3.0	1.0	2.0	2.7	1479	chr2L	15956046	intron	beat-Ib -	chr2L	15956786	intron	beat-Ib -	chr2L	15957525	intron	beat-Ib -	chr2L_8_15955001	chr2L_15955001	RAL-356
160	chr2L	16071771	16071771	chr2L	16217660	16217660	copia	5	145889	17.0	23.0	20.0	0.2	145889	chr2L	16071771	intron	beat-Ia +	chr2L	16144716	intergenic	not near genes	chr2L	16217660	intergenic	not near genes	chr2L_5_16140001	chr2L_16140001	RAL-356
163	chr2L	16280266	16280278	chr2L	16281420	16281435	1360	7	1157	7.0	3.5	5.2	1.1	1169	chr2L	16280266	intron	crp -	chr2L	16280850	intron	crp -	chr2L	16281435	intron	crp -	chr2L_7_16280001	chr2L_16280001	RAL-356
166	chr2L	16958111	16958135	chr2L	16962889	16962923	Doc	4	4775	1.0	1.0	1.0	2.0	4812	chr2L	16958111	intergenic	not near genes	chr2L	16960517	intergenic	not near genes	chr2L	16962923	intergenic	not near genes	chr2L_4_16960001	chr2L_16960001	RAL-356
169	chr2L	17273208	17273214	chr2L	17277976	17277987	F-element	4	4772	3.5	2.5	3.0	1.0	4779	chr2L	17273208	intergenic	not near genes	chr2L	17275598	intergenic	not near genes	chr2L	17277987	intergenic	not near genes	chr2L_4_17275001	chr2L_17275001	RAL-356
175	chr2L	17951951	17951977	chr2L	17953417	17953443	hobo	6	1463	1.0	2.5	1.8	2.1	1492	chr2L	17951951	intergenic	CR44398 -,CR44397 -	chr2L	17952697	intergenic	not near genes	chr2L	17953443	intergenic	not near genes	chr2L_6_17950001	chr2L_17950001	RAL-356
176	chr2L	18051877	18051904	chr2L	18061023	18061038	roo	5	9141	3.5	3.5	3.5	1.1	9161	chr2L	18051877	intron	rdo +	chr2L	18056458	intron	rdo +	chr2L	18061038	intron	rdo +	chr2L_5_18055001	chr2L_18055001	RAL-356
179	chr2L	18408050	18408055	chr2L	18412815	18412824	Doc	4	4771	2.0	5.0	3.5	0.9	4774	chr2L	18408050	intergenic	not near genes	chr2L	18410437	intergenic	not near genes	chr2L	18412824	intergenic	not near genes	chr2L_4_18410001	chr2L_18410001	RAL-356
187	chr2L	19147378	19147389	chr2L	19154408	19154424	297	5	7032	4.0	2.5	3.2	1.2	7046	chr2L	19147378	intron	brat +	chr2L	19150901	intron	brat +	chr2L	19154424	intron	brat +	chr2L_5_19150001	chr2L_19150001	RAL-356
188	chr2L	19147390	19147403	chr2L	19154404	19154437	297	6	7024	2.0	2.0	2.0	2.0	7047	chr2L	19147390	intron	brat +	chr2L	19150914	intron	brat +	chr2L	19154437	intron	brat +	chr2L_6_19150001	chr2L_19150001	RAL-356
191	chr2L	19345027	19345048	chr2L	19357222	19357249	blood	9	12200	1.5	3.0	2.2	2.8	12222	chr2L	19345027	intron	dnt -	chr2L	19351138	intron	dnt -	chr2L	19357249	intron	dnt -	chr2L_9_19350001	chr2L_19350001	RAL-356
196	chr2L	19620113	19620130	chr2L	19621086	19621119	jockey	10	978	6.5	3.5	5.0	1.7	1006	chr2L	19620113	intron	Lar +	chr2L	19620616	intron	Lar +	chr2L	19621119	intron	Lar +	chr2L_10_19620001	chr2L_19620001	RAL-356
197	chr2L	19652572	19652593	chr2L	19674006	19674008	opus	4	21424	4.0	1.5	2.8	1.1	21436	chr2L	19652572	intron	Lar +	chr2L	19663290	intron	Lar +	chr2L	19674008	intron	Lar +	chr2L_4_19660001	chr2L_19660001	RAL-356
198	chr2L	19703538	19703570	chr2L	19712674	19712686	roo	6	9131	5.5	2.0	3.8	1.2	9148	chr2L	19703538	intron	Lar +	chr2L	19708112	intron	Lar +	chr2L	19712686	intron	Lar +	chr2L_6_19705001	chr2L_19705001	RAL-356
199	chr2L	19762809	19762838	chr2L	19763051	19763080	pogo	4	240	3.0	2.0	2.5	1.1	271	chr2L	19762809	5` UTR	fbp -	chr2L	19762944	intron	fbp -	chr2L	19763080	intron	fbp -	chr2L_4_19760001	chr2L_19760001	RAL-356
206	chr2L	20272127	20272145	chr2L	20282822	20282841	copia	5	10701	0.5	1.0	0.8	2.8	10714	chr2L	20272127	intergenic	not near genes	chr2L	20277484	intergenic	not near genes	chr2L	20282841	intergenic	not near genes	chr2L_5_20275001	chr2L_20275001	RAL-356
211	chr2L	20568660	20568683	chr2L	20569050	20569067	X-element	5	389	2.0	2.5	2.2	1.6	407	chr2L	20568660	intron	CR45347 +	chr2L	20568864	intron	CR45347 +	chr2L	20569067	intron	CR45347 +	chr2L_5_20565001	chr2L_20565001	RAL-356
212	chr2L	20901471	20901480	chr2L	20902623	20902625	1360	6	1155	5.5	4.5	5.0	1.0	1154	chr2L	20901471	intron,intron	CG43739 -,sky -	chr2L	20902048	intron,intron	CG43739 -,sky -	chr2L	20902625	intron,intron	CG43739 -,sky -	chr2L_6_20900001	chr2L_20900001	RAL-356
213	chr2L	20976660	20976681	chr2L	20981457	20981489	X-element	6	4802	1.5	4.0	2.8	1.6	4829	chr2L	20976660	intron	CG42238 -	chr2L	20979074	intron	CG42238 -	chr2L	20981489	intron	CG42238 -	chr2L_6_20975001	chr2L_20975001	RAL-356
215	chr2L	21020287	21020309	chr2L	21023951	21023986	NOF	5	3663	1.5	1.5	1.5	2.0	3699	chr2L	21020287	intron	CG42238 -	chr2L	21022136	intron	CG42238 -	chr2L	21023986	intron	CG42238 -	chr2L_5_21020001	chr2L_21020001	RAL-356
219	chr2L	21981688	21981709	chr2L	21990853	21990856	roo	8	9162	1.0	4.0	2.5	2.3	9168	chr2L	21981688	exon	CG2528 -	chr2L	21986272	intron	CG2528 -	chr2L	21990856	exon	CG2528 -	chr2L_8_21985001	chr2L_21985001	RAL-356
221	chr2R	529328	529347	chr2R	537953	537956	Max-element	6	8621	1.5	1.5	1.5	2.4	8628	chr2R	529328	intron	CG40378 +	chr2R	533642	intron	CG40378 +	chr2R	537956	intron	CG40378 +	chr2R_6_530001	chr2R_530001	RAL-356
222	chr2R	1082377	1082384	chr2R	1087130	1087160	Doc	7	4762	4.5	6.5	5.5	1.1	4783	chr2R	1082377	intron	rl +	chr2R	1084768	intron	rl +	chr2R	1087160	intron	rl +	chr2R_7_1080001	chr2R_1080001	RAL-356
223	chr2R	2498988	2499016	chr2R	2508130	2508163	roo	6	9143	2.5	2.0	2.2	1.9	9175	chr2R	2498988	intron	MFS17 -	chr2R	2503576	intron	MFS17 -	chr2R	2508163	intron	MFS17 -	chr2R_6_2500001	chr2R_2500001	RAL-356
227	chr2R	4622969	4622984	chr2R	4624109	4624129	1360	5	1145	4.0	2.0	3.0	1.2	1160	chr2R	4622969	intergenic	CR44101 -	chr2R	4623549	intergenic	not near genes	chr2R	4624129	intergenic	not near genes	chr2R_5_4620001	chr2R_4620001	RAL-356
228	chr2R	4624650	4624670	chr2R	4626544	4626575	Bica	5	1898	6.5	8.5	7.5	0.6	1925	chr2R	4624650	intergenic	not near genes	chr2R	4625612	intergenic	not near genes	chr2R	4626575	intergenic	not near genes	chr2R_5_4625001	chr2R_4625001	RAL-356
231	chr2R	4750353	4750374	chr2R	4751510	4751525	1360	4	1153	4.5	6.5	5.5	0.6	1172	chr2R	4750353	intron	conu +	chr2R	4750939	intron	conu +	chr2R	4751525	intron	conu +	chr2R_4_4750001	chr2R_4750001	RAL-356
237	chr2R	5543203	5543223	chr2R	5547273	5547295	invader1	5	4077	1.5	4.5	3.0	1.2	4092	chr2R	5543203	intron	CG30438 +	chr2R	5545249	intron	CG30438 +	chr2R	5547295	intron	CG30438 +	chr2R_5_5545001	chr2R_5545001	RAL-356
238	chr2R	6096715	6096743	chr2R	6101912	6101919	BS	6	5183	5.5	4.5	5.0	1.0	5204	chr2R	6096715	intron	EcR -	chr2R	6099317	intron	EcR -	chr2R	6101919	intron	EcR -	chr2R_6_6095001	chr2R_6095001	RAL-356
243	chr2R	7235828	7235843	chr2R	7240913	7240932	jockey	8	5087	4.5	4.0	4.2	1.5	5104	chr2R	7235828	intergenic	not near genes	chr2R	7238380	intergenic	not near genes	chr2R	7240932	intergenic	not near genes	chr2R_8_7235001	chr2R_7235001	RAL-356
247	chr2R	7815680	7815702	chr2R	7822139	7822171	Burdock	8	6462	2.5	0.5	1.5	3.2	6491	chr2R	7815680	intergenic	CG1882 +	chr2R	7818926	intergenic	not near genes	chr2R	7822171	3` UTR	cathD -	chr2R_8_7815001	chr2R_7815001	RAL-356
249	chr2R	7869188	7869221	chr2R	7873974	7874007	Doc	5	4780	4.0	4.5	4.2	1.0	4819	chr2R	7869188	intron	Dgk -	chr2R	7871598	intron	Dgk -	chr2R	7874007	intron	Dgk -	chr2R_5_7870001	chr2R_7870001	RAL-356
253	chr2R	8330865	8330881	chr2R	8331351	8331365	roo	4	486	5.0	2.0	3.5	0.9	500	chr2R	8330865	intron	pdm3 +	chr2R	8331115	intron	pdm3 +	chr2R	8331365	intron	pdm3 +	chr2R_4_8330001	chr2R_8330001	RAL-356
254	chr2R	8330887	8330895	chr2R	8331346	8331362	roo	8	474	2.5	2.0	2.2	2.5	475	chr2R	8330887	intron	pdm3 +	chr2R	8331124	intron	pdm3 +	chr2R	8331362	intron	pdm3 +	chr2R_8_8330001	chr2R_8330001	RAL-356
257	chr2R	8722767	8722794	chr2R	8723004	8723022	pogo	7	230	4.0	3.0	3.5	1.6	255	chr2R	8722767	intron	CG14767 -	chr2R	8722894	intron	CG14767 -	chr2R	8723022	intron	CG14767 -	chr2R_7_8720001	chr2R_8720001	RAL-356
265	chr2R	9212712	9212726	chr2R	9213181	9213194	roo	7	475	4.0	5.0	4.5	1.3	482	chr2R	9212712	intergenic	CR45309 +	chr2R	9212953	intergenic	CR45309 +	chr2R	9213194	5` UTR	CR45309 +	chr2R_7_9210001	chr2R_9210001	RAL-356
267	chr2R	10005852	10005861	chr2R	10007016	10007023	1360	4	1162	9.0	5.5	7.2	0.5	1171	chr2R	10005852	intron	Pka-R2 -	chr2R	10006438	intron	Pka-R2 -	chr2R	10007023	intron	Pka-R2 -	chr2R_4_10005001	chr2R_10005001	RAL-356
268	chr2R	10005862	10005884	chr2R	10007013	10007040	1360	10	1150	3.0	4.5	3.8	2.1	1178	chr2R	10005862	intron	Pka-R2 -	chr2R	10006451	intron	Pka-R2 -	chr2R	10007040	intron	Pka-R2 -	chr2R_10_10005001	chr2R_10005001	RAL-356
279	chr2R	10585578	10585585	chr2R	10594153	10594168	Tirant	6	8580	3.0	4.0	3.5	1.3	8590	chr2R	10585578	intron	psq +	chr2R	10589873	intron	psq +	chr2R	10594168	intron	psq +	chr2R_6_10585001	chr2R_10585001	RAL-356
280	chr2R	10585589	10585591	chr2R	10594149	10594170	Tirant	5	8572	3.0	3.5	3.2	1.2	8581	chr2R	10585589	intron	psq +	chr2R	10589880	intron	psq +	chr2R	10594170	intron	psq +	chr2R_5_10585001	chr2R_10585001	RAL-356
291	chr2R	10948027	10948062	chr2R	10955576	10955590	17.6	6	7540	2.0	3.0	2.5	1.7	7563	chr2R	10948027	intergenic	not near genes	chr2R	10951808	intergenic	not near genes	chr2R	10955590	intergenic	not near genes	chr2R_6_10950001	chr2R_10950001	RAL-356
292	chr2R	11019892	11019898	chr2R	11024958	11024963	jockey	4	5065	5.5	3.0	4.2	0.8	5071	chr2R	11019892	intron	luna -	chr2R	11022428	intron	luna -	chr2R	11024963	intron	luna -	chr2R_4_11020001	chr2R_11020001	RAL-356
298	chr2R	11207816	11207852	chr2R	11208006	11208025	BS	8	185	3.5	2.0	2.8	2.1	209	chr2R	11207816	intron	shn +	chr2R	11207920	intron	shn +	chr2R	11208025	intron	shn +	chr2R_8_11205001	chr2R_11205001	RAL-356
299	chr2R	11415523	11415550	chr2R	11418665	11418683	opus	10	3140	0.5	2.5	1.5	4.0	3160	chr2R	11415523	intron	Drip -	chr2R	11417103	intron	Drip -	chr2R	11418683	intron	Drip -	chr2R_10_11415001	chr2R_11415001	RAL-356
310	chr2R	12481147	12481169	chr2R	12482938	12482973	roo	6	1794	1.0	3.5	2.2	1.9	1826	chr2R	12481147	exon	Dh44-R2 +	chr2R	12482060	intron	Dh44-R2 +	chr2R	12482973	intron	Dh44-R2 +	chr2R_6_12480001	chr2R_12480001	RAL-356
311	chr2R	12501703	12501723	chr2R	12503865	12503870	Rt1c	6	2158	2.5	6.0	4.2	1.2	2167	chr2R	12501703	intron	fdl -	chr2R	12502786	intron	fdl -	chr2R	12503870	intron	fdl -	chr2R_6_12500001	chr2R_12500001	RAL-356
313	chr2R	12819470	12819479	chr2R	12824523	12824532	jockey	5	5062	3.5	5.5	4.5	0.9	5062	chr2R	12819470	intergenic	not near genes	chr2R	12822001	intergenic	not near genes	chr2R	12824532	intergenic	not near genes	chr2R_5_12820001	chr2R_12820001	RAL-356
314	chr2R	13136841	13136855	chr2R	13141639	13141653	Doc	6	4798	9.5	3.0	6.2	0.8	4812	chr2R	13136841	exon	Cap-G +	chr2R	13139247	intron	Cap-G +	chr2R	13141653	intron	Cap-G +	chr2R_6_13135001	chr2R_13135001	RAL-356
315	chr2R	13136856	13136859	chr2R	13141636	13141638	Doc	5	4782	7.0	3.0	5.0	0.8	4782	chr2R	13136856	exon	Cap-G +	chr2R	13139247	intron	Cap-G +	chr2R	13141638	intron	Cap-G +	chr2R_5_13135001	chr2R_13135001	RAL-356
316	chr2R	13136860	13136867	chr2R	13141633	13141665	Doc	6	4780	6.5	2.5	4.5	1.1	4805	chr2R	13136860	intron	Cap-G +	chr2R	13139262	intron	Cap-G +	chr2R	13141665	intron	Cap-G +	chr2R_6_13135001	chr2R_13135001	RAL-356
320	chr2R	13580518	13580533	chr2R	13580848	13580865	jockey	4	335	1.5	3.0	2.2	1.2	347	chr2R	13580518	3` UTR	CG6191 -	chr2R	13580692	3` UTR,3` UTR	CG6191 -,CG45088 -	chr2R	13580865	3` UTR,3` UTR	CG6191 -,CG45088 -	chr2R_4_13580001	chr2R_13580001	RAL-356
323	chr2R	13905614	13905631	chr2R	13907581	13907597	Rt1a	8	1970	3.5	3.0	3.2	1.9	1983	chr2R	13905614	intron	shot -	chr2R	13906606	intron	shot -	chr2R	13907597	intron	shot -	chr2R_8_13905001	chr2R_13905001	RAL-356
327	chr2R	14467304	14467326	chr2R	14476443	14476477	roo	7	9143	3.5	11.5	7.5	0.8	9173	chr2R	14467304	intergenic	not near genes	chr2R	14471890	intergenic	not near genes	chr2R	14476477	5` UTR	CR44462 +	chr2R_7_14470001	chr2R_14470001	RAL-356
328	chr2R	14497394	14497422	chr2R	14498551	14498574	1360	4	1149	0.5	1.5	1.0	2.0	1180	chr2R	14497394	3` UTR	Cpsf160 -	chr2R	14497984	intron	Cpsf160 -	chr2R	14498574	3` UTR	Cpsf160 -	chr2R_4_14495001	chr2R_14495001	RAL-356
332	chr2R	14889231	14889241	chr2R	14897817	14897828	Max-element	5	8592	5.0	0.0	2.5	1.4	8597	chr2R	14889231	intergenic	Cyp6a8 -	chr2R	14893530	intergenic	not near genes	chr2R	14897828	intergenic	not near genes	chr2R_5_14890001	chr2R_14890001	RAL-356
335	chr2R	15015478	15015485	chr2R	15022880	15022890	mdg1	4	7406	1.0	0.0	0.5	2.7	7412	chr2R	15015478	intron	hbs +	chr2R	15019184	intron	hbs +	chr2R	15022890	intron	hbs +	chr2R_4_15015001	chr2R_15015001	RAL-356
336	chr2R	15084979	15085007	chr2R	15092028	15092046	297	4	7043	2.0	1.5	1.8	1.4	7067	chr2R	15084979	intergenic	not near genes	chr2R	15088512	intergenic	not near genes	chr2R	15092046	5` UTR	CR44457 +	chr2R_4_15085001	chr2R_15085001	RAL-356
337	chr2R	15119332	15119341	chr2R	15127797	15127820	Tirant	4	8476	6.0	4.0	5.0	0.7	8488	chr2R	15119332	intron	chn +	chr2R	15123576	intron	chn +	chr2R	15127820	intron	chn +	chr2R_4_15120001	chr2R_15120001	RAL-356
348	chr2R	17147260	17147272	chr2R	17152267	17152298	jockey	4	5014	2.5	3.5	3.0	1.0	5038	chr2R	17147260	intergenic	not near genes	chr2R	17149779	intergenic	not near genes	chr2R	17152298	intergenic	not near genes	chr2R_4_17145001	chr2R_17145001	RAL-356
350	chr2R	17176364	17176385	chr2R	17182542	17182561	diver	4	6178	0.5	2.5	1.5	1.6	6197	chr2R	17176364	intergenic	not near genes	chr2R	17179462	intergenic	not near genes	chr2R	17182561	intergenic	not near genes	chr2R_4_17175001	chr2R_17175001	RAL-356
351	chr2R	17236517	17236541	chr2R	17241713	17241745	copia	9	5198	1.5	3.5	2.5	2.6	5228	chr2R	17236517	intron	mbl +	chr2R	17239131	intron	mbl +	chr2R	17241745	intron	mbl +	chr2R_9_17235001	chr2R_17235001	RAL-356
356	chr2R	17784035	17784057	chr2R	17784267	17784295	pogo	12	236	4.5	5.5	5.0	2.0	260	chr2R	17784035	intergenic	mir-31a -	chr2R	17784165	intergenic	mir-31a -	chr2R	17784295	intergenic	mir-31a -	chr2R_12_17780001	chr2R_17780001	RAL-356
361	chr2R	18111707	18111715	chr2R	18115550	18115578	F-element	5	3853	1.0	0.0	0.5	3.3	3871	chr2R	18111707	intergenic	not near genes	chr2R	18113642	intergenic	not near genes	chr2R	18115578	intergenic	not near genes	chr2R_5_18110001	chr2R_18110001	RAL-356
367	chr2R	18575817	18575825	chr2R	18581988	18581994	3S18	4	6175	0.5	4.0	2.2	1.2	6177	chr2R	18575817	intron	GEFmeso -	chr2R	18578906	intron	GEFmeso -	chr2R	18581994	intron	GEFmeso -	chr2R_4_18575001	chr2R_18575001	RAL-356
368	chr2R	18590888	18590900	chr2R	18600019	18600028	roo	6	9140	3.0	2.0	2.5	1.7	9140	chr2R	18590888	intron	GEFmeso -	chr2R	18595458	intron	GEFmeso -	chr2R	18600028	intron	GEFmeso -	chr2R_6_18595001	chr2R_18595001	RAL-356
374	chr2R	19776607	19776624	chr2R	19779928	19779947	jockey	5	3316	8.0	2.5	5.2	0.8	3340	chr2R	19776607	intergenic	not near genes	chr2R	19778277	intergenic	not near genes	chr2R	19779947	intergenic	not near genes	chr2R_5_19775001	chr2R_19775001	RAL-356
377	chr2R	19914846	19914878	chr2R	19922258	19922268	mdg1	7	7406	5.0	3.0	4.0	1.4	7422	chr2R	19914846	intergenic	not near genes	chr2R	19918557	intergenic	not near genes	chr2R	19922268	intergenic	not near genes	chr2R_7_19915001	chr2R_19915001	RAL-356
378	chr2R	19957429	19957461	chr2R	19962631	19962656	copia	5	5194	3.0	1.5	2.2	1.6	5227	chr2R	19957429	intergenic	CG44623 +	chr2R	19960042	intergenic	not near genes	chr2R	19962656	intergenic	not near genes	chr2R_5_19960001	chr2R_19960001	RAL-356
385	chr2R	20739443	20739475	chr2R	20744210	20744229	F-element	5	4756	1.0	6.5	3.8	1.0	4786	chr2R	20739443	intron	dpr +	chr2R	20741836	intron	dpr +	chr2R	20744229	intron	dpr +	chr2R_5_20740001	chr2R_20740001	RAL-356
394	chr2R	21738302	21738309	chr2R	21747439	21747468	roo	4	9147	1.5	1.0	1.2	1.8	9166	chr2R	21738302	intergenic	not near genes	chr2R	21742885	intergenic	not near genes	chr2R	21747468	intergenic	not near genes	chr2R_4_21740001	chr2R_21740001	RAL-356
395	chr2R	21753091	21753096	chr2R	21753575	21753581	roo	4	484	7.5	5.5	6.5	0.5	490	chr2R	21753091	intergenic	not near genes	chr2R	21753336	intergenic	not near genes	chr2R	21753581	intergenic	not near genes	chr2R_4_21750001	chr2R_21750001	RAL-356
396	chr2R	21753101	21753117	chr2R	21753573	21753587	roo	5	471	4.0	4.0	4.0	1.0	486	chr2R	21753101	intergenic	not near genes	chr2R	21753344	intergenic	not near genes	chr2R	21753587	intergenic	not near genes	chr2R_5_21750001	chr2R_21750001	RAL-356
404	chr2R	22349698	22349725	chr2R	22351477	22351498	jockey	8	1778	2.5	2.5	2.5	2.3	1800	chr2R	22349698	intron	Liprin-gamma -	chr2R	22350598	intron	Liprin-gamma -	chr2R	22351498	intron	Liprin-gamma -	chr2R_8_22350001	chr2R_22350001	RAL-356
405	chr2R	22360380	22360412	chr2R	22360813	22360828	jockey	6	427	2.0	4.0	3.0	1.5	448	chr2R	22360380	intron	Liprin-gamma -	chr2R	22360604	intron	Liprin-gamma -	chr2R	22360828	intron	Liprin-gamma -	chr2R_6_22360001	chr2R_22360001	RAL-356
409	chr2R	22525755	22525775	chr2R	22529299	22529311	jockey	5	3545	1.5	1.0	1.2	2.3	3556	chr2R	22525755	intron	px -	chr2R	22527533	intron	px -	chr2R	22529311	intron	px -	chr2R_5_22525001	chr2R_22525001	RAL-356
410	chr2R	22774967	22775002	chr2R	22775381	22775399	jockey	8	408	3.5	2.0	2.8	2.1	432	chr2R	22774967	intron	CG42260 -	chr2R	22775183	intron	CG42260 -	chr2R	22775399	intron	CG42260 -	chr2R_8_22775001	chr2R_22775001	RAL-356
423	chr2R	24177239	24177267	chr2R	24184721	24184751	412	6	7481	0.5	2.0	1.2	2.7	7512	chr2R	24177239	3` UTR	Nop60B +	chr2R	24180995	intron	Nop60B +	chr2R	24184751	3` UTR	Nop60B +	chr2R_6_24180001	chr2R_24180001	RAL-356
425	chr2R	24353442	24353459	chr2R	24361790	24361821	roo	4	8354	3.0	6.0	4.5	0.7	8379	chr2R	24353442	intron,intron	bs +,CR44811 -	chr2R	24357632	intron,intron	bs +,CR44811 -	chr2R	24361821	intron,intron	bs +,CR44811 -	chr2R_4_24355001	chr2R_24355001	RAL-356
434	chr2R	24727888	24727897	chr2R	24735392	24735403	mdg1	4	7506	7.0	5.0	6.0	0.6	7515	chr2R	24727888	intron	Mid1 -	chr2R	24731646	intron	Mid1 -	chr2R	24735403	intron	Mid1 -	chr2R_4_24730001	chr2R_24730001	RAL-356
435	chr2R	24727903	24727915	chr2R	24735390	24735404	mdg1	5	7494	4.0	4.5	4.2	1.0	7501	chr2R	24727903	intron	Mid1 -	chr2R	24731654	intron	Mid1 -	chr2R	24735404	intron	Mid1 -	chr2R_5_24730001	chr2R_24730001	RAL-356
436	chr2R	24763611	24763641	chr2R	24765586	24765614	G2	8	1965	4.0	5.0	4.5	1.5	2003	chr2R	24763611	exon	CG3894 +	chr2R	24764612	intron	CG3894 +	chr2R	24765614	exon	CG3894 +	chr2R_8_24760001	chr2R_24760001	RAL-356
450	chr3L	110217	110235	chr3L	119383	119384	roo	5	9159	1.5	2.0	1.8	1.8	9167	chr3L	110217	intergenic	not near genes	chr3L	114800	intergenic	not near genes	chr3L	119384	intergenic	not near genes	chr3L_5_110001	chr3L_110001	RAL-356
451	chr3L	402687	402717	chr3L	409740	409750	297	12	7047	7.0	2.0	4.5	2.2	7063	chr3L	402687	intergenic	not near genes	chr3L	406218	intergenic	not near genes	chr3L	409750	intergenic	not near genes	chr3L_12_405001	chr3L_405001	RAL-356
457	chr3L	858002	858032	chr3L	866483	866513	Tirant	6	8480	1.5	4.5	3.0	1.5	8511	chr3L	858002	intergenic	not near genes	chr3L	862258	intergenic	not near genes	chr3L	866513	5` UTR	CG12502 +	chr3L_6_860001	chr3L_860001	RAL-356
459	chr3L	925175	925210	chr3L	932600	932614	mdg1	7	7417	1.5	5.5	3.5	1.6	7439	chr3L	925175	intron	Glut1 +	chr3L	928894	intron	Glut1 +	chr3L	932614	intron	Glut1 +	chr3L_7_925001	chr3L_925001	RAL-356
461	chr3L	939774	939805	chr3L	940894	940907	jockey	7	1112	4.5	4.5	4.5	1.3	1133	chr3L	939774	intron	Glut1 +	chr3L	940340	intron	Glut1 +	chr3L	940907	intron	Glut1 +	chr3L_7_940001	chr3L_940001	RAL-356
464	chr3L	1154139	1154161	chr3L	1163280	1163293	roo	5	9138	2.0	0.0	1.0	2.5	9154	chr3L	1154139	intron	bab2 -	chr3L	1158716	intron	bab2 -	chr3L	1163293	intron	bab2 -	chr3L_5_1155001	chr3L_1155001	RAL-356
465	chr3L	1219594	1219622	chr3L	1227327	1227337	412	6	7726	1.0	5.0	3.0	1.5	7743	chr3L	1219594	intron	mwh +	chr3L	1223466	intron	mwh +	chr3L	1227337	intron	mwh +	chr3L_6_1220001	chr3L_1220001	RAL-356
471	chr3L	1505998	1506033	chr3L	1513595	1513630	17.6	9	7592	3.5	4.0	3.8	1.9	7632	chr3L	1505998	intron,intron	Psa +,cue -	chr3L	1509814	intron,intron	Psa +,cue -	chr3L	1513630	intron,intron	Psa +,cue -	chr3L_9_1505001	chr3L_1505001	RAL-356
479	chr3L	2447527	2447536	chr3L	2456659	2456692	roo	6	9150	3.0	5.5	4.2	1.2	9165	chr3L	2447527	intron	CG45186 +	chr3L	2452110	intron	CG45186 +	chr3L	2456692	intron	CG45186 +	chr3L_6_2450001	chr3L_2450001	RAL-356
488	chr3L	3281453	3281476	chr3L	3281932	3281958	Doc	11	485	3.0	9.5	6.2	1.5	505	chr3L	3281453	intron	CG12017 +	chr3L	3281706	intron	CG12017 +	chr3L	3281958	intron	CG12017 +	chr3L_11_3280001	chr3L_3280001	RAL-356
491	chr3L	3475074	3475110	chr3L	3475518	3475554	jockey	10	438	2.0	5.5	3.8	2.1	480	chr3L	3475074	intron	CG42324 +	chr3L	3475314	intron	CG42324 +	chr3L	3475554	intron	CG42324 +	chr3L_10_3475001	chr3L_3475001	RAL-356
494	chr3L	3601297	3601330	chr3L	3606608	3606618	copia	7	5307	2.0	3.0	2.5	2.0	5321	chr3L	3601297	intron	Eip63E +	chr3L	3603958	intron	Eip63E +	chr3L	3606618	intron	Eip63E +	chr3L_7_3600001	chr3L_3600001	RAL-356
503	chr3L	5034167	5034191	chr3L	5043308	5043321	roo	9	9140	0.5	1.5	1.0	4.5	9154	chr3L	5034167	intron	Con -	chr3L	5038744	intron	Con -	chr3L	5043321	intron	Con -	chr3L_9_5035001	chr3L_5035001	RAL-356
504	chr3L	5045461	5045489	chr3L	5050238	5050264	Doc	6	4774	0.0	2.0	1.0	3.0	4803	chr3L	5045461	intron	Con -	chr3L	5047862	intron	Con -	chr3L	5050264	intron	Con -	chr3L_6_5045001	chr3L_5045001	RAL-356
511	chr3L	5926315	5926334	chr3L	5926503	5926514	BS	6	182	7.0	5.0	6.0	0.9	199	chr3L	5926315	intron	Vap-33B +	chr3L	5926414	intron	Vap-33B +	chr3L	5926514	intron	Vap-33B +	chr3L_6_5925001	chr3L_5925001	RAL-356
512	chr3L	5926338	5926347	chr3L	5926502	5926511	BS	5	172	5.5	4.0	4.8	0.9	173	chr3L	5926338	intron	Vap-33B +	chr3L	5926424	intron	Vap-33B +	chr3L	5926511	intron	Vap-33B +	chr3L_5_5925001	chr3L_5925001	RAL-356
514	chr3L	6001691	6001701	chr3L	6004377	6004383	jockey	4	2689	3.0	1.5	2.2	1.2	2692	chr3L	6001691	intron	PVRAP +	chr3L	6003037	intron	PVRAP +	chr3L	6004383	intron	PVRAP +	chr3L_4_6000001	chr3L_6000001	RAL-356
517	chr3L	6040371	6040391	chr3L	6042726	6042747	Doc	4	2356	0.5	1.0	0.8	2.2	2376	chr3L	6040371	intergenic	Jon65Aiv +	chr3L	6041559	intergenic	not near genes	chr3L	6042747	intergenic	not near genes	chr3L_4_6040001	chr3L_6040001	RAL-356
518	chr3L	6220914	6220948	chr3L	6230066	6230092	roo	6	9146	1.5	7.0	4.2	1.2	9178	chr3L	6220914	5` UTR	pncr008:3L +	chr3L	6225503	intergenic	not near genes	chr3L	6230092	intergenic	not near genes	chr3L_6_6225001	chr3L_6225001	RAL-356
523	chr3L	6855920	6855951	chr3L	6860703	6860715	Doc	7	4776	1.0	1.5	1.2	3.2	4795	chr3L	6855920	intergenic	not near genes	chr3L	6858318	intergenic	not near genes	chr3L	6860715	intergenic	not near genes	chr3L_7_6855001	chr3L_6855001	RAL-356
524	chr3L	6887515	6887548	chr3L	6895007	6895037	roo	8	7486	1.5	2.5	2.0	2.7	7522	chr3L	6887515	intergenic	not near genes	chr3L	6891276	intergenic	not near genes	chr3L	6895037	intergenic	not near genes	chr3L_8_6890001	chr3L_6890001	RAL-356
538	chr3L	7886518	7886546	chr3L	7889030	7889064	Stalker4	7	2514	1.5	1.0	1.2	3.2	2546	chr3L	7886518	intron	CG32365 +	chr3L	7887791	intron	CG32365 +	chr3L	7889064	intron	CG32365 +	chr3L_7_7885001	chr3L_7885001	RAL-356
539	chr3L	7985366	7985394	chr3L	7987690	7987708	NOF	7	2314	3.0	2.0	2.5	2.0	2342	chr3L	7985366	intron	nmo +	chr3L	7986537	intron	nmo +	chr3L	7987708	intron	nmo +	chr3L_7_7985001	chr3L_7985001	RAL-356
550	chr3L	9076951	9076954	chr3L	9084495	9084514	412	4	7548	4.0	3.0	3.5	0.9	7563	chr3L	9076951	exon	Tequila +	chr3L	9080732	intron	Tequila +	chr3L	9084514	exon	Tequila +	chr3L_4_9080001	chr3L_9080001	RAL-356
551	chr3L	9219267	9219281	chr3L	9219911	9219927	jockey	6	652	3.0	2.0	2.5	1.7	660	chr3L	9219267	intergenic	not near genes	chr3L	9219597	intergenic	not near genes	chr3L	9219927	intergenic	not near genes	chr3L_6_9215001	chr3L_9215001	RAL-356
552	chr3L	9270620	9270635	chr3L	9278373	9278379	roo	4	7748	4.5	4.0	4.2	0.8	7759	chr3L	9270620	intron	GluRIB +	chr3L	9274500	intron	GluRIB +	chr3L	9278379	intron	GluRIB +	chr3L_4_9270001	chr3L_9270001	RAL-356
559	chr3L	9929674	9929701	chr3L	9938453	9938462	roo	7	8770	2.0	3.5	2.8	1.8	8788	chr3L	9929674	intron	CG34356 +	chr3L	9934068	intron	CG34356 +	chr3L	9938462	intron	CG34356 +	chr3L_7_9930001	chr3L_9930001	RAL-356
563	chr3L	10414946	10414977	chr3L	10417318	10417348	Doc	10	2364	1.5	1.0	1.2	4.5	2402	chr3L	10414946	intergenic	CG12362 +	chr3L	10416147	intergenic	not near genes	chr3L	10417348	intergenic	not near genes	chr3L_10_10415001	chr3L_10415001	RAL-356
569	chr3L	11105304	11105326	chr3L	11107003	11107018	X-element	5	1701	1.0	3.5	2.2	1.6	1714	chr3L	11105304	intergenic	not near genes	chr3L	11106161	intergenic	not near genes	chr3L	11107018	3` UTR	CG32073 -	chr3L_5_11105001	chr3L_11105001	RAL-356
572	chr3L	11723090	11723107	chr3L	11727879	11727888	Doc	4	4786	3.5	1.5	2.5	1.1	4798	chr3L	11723090	3` UTR	Bmcp +	chr3L	11725489	intron	Bmcp +	chr3L	11727888	3` UTR	Bmcp +	chr3L_4_11725001	chr3L_11725001	RAL-356
581	chr3L	11864568	11864584	chr3L	11865847	11865847	pogo	4	1275	3.0	4.0	3.5	0.9	1279	chr3L	11864568	intron	CG44837 -	chr3L	11865208	intron	CG44837 -	chr3L	11865847	intron	CG44837 -	chr3L_4_11865001	chr3L_11865001	RAL-356
591	chr3L	12874935	12874956	chr3L	12877219	12877236	jockey	4	2285	1.5	1.5	1.5	1.6	2301	chr3L	12874935	intergenic	not near genes	chr3L	12876086	intergenic	not near genes	chr3L	12877236	intergenic	not near genes	chr3L_4_12875001	chr3L_12875001	RAL-356
592	chr3L	12919279	12919308	chr3L	12924750	12924750	Rt1c	10	5464	5.5	7.5	6.5	1.3	5471	chr3L	12919279	intergenic	not near genes	chr3L	12922014	intergenic	not near genes	chr3L	12924750	intergenic	not near genes	chr3L_10_12920001	chr3L_12920001	RAL-356
593	chr3L	12957806	12957817	chr3L	12962277	12962288	copia	6	4473	3.0	5.0	4.0	1.2	4482	chr3L	12957806	intergenic	not near genes	chr3L	12960047	intergenic	not near genes	chr3L	12962288	intergenic	not near genes	chr3L_6_12960001	chr3L_12960001	RAL-356
607	chr3L	13525158	13525182	chr3L	13532950	13532978	roo	9	7789	6.0	4.5	5.2	1.5	7820	chr3L	13525158	intergenic	not near genes	chr3L	13529068	intergenic	not near genes	chr3L	13532978	intergenic	not near genes	chr3L_9_13525001	chr3L_13525001	RAL-356
615	chr3L	14245576	14245591	chr3L	14245663	14245685	1360	7	90	4.0	3.5	3.8	1.5	109	chr3L	14245576	3` UTR	CR44561 -	chr3L	14245630	3` UTR	CR44561 -	chr3L	14245685	3` UTR	CR44561 -	chr3L_7_14245001	chr3L_14245001	RAL-356
617	chr3L	14295991	14296011	chr3L	14296468	14296485	roo	5	479	5.0	3.0	4.0	1.0	494	chr3L	14295991	intron	fz +	chr3L	14296238	intron	fz +	chr3L	14296485	intron	fz +	chr3L_5_14295001	chr3L_14295001	RAL-356
620	chr3L	14721181	14721205	chr3L	14723024	14723031	Rt1c	7	1834	6.5	4.0	5.2	1.1	1850	chr3L	14721181	intron	ome +	chr3L	14722106	intron	ome +	chr3L	14723031	intron	ome +	chr3L_7_14720001	chr3L_14720001	RAL-356
621	chr3L	15085052	15085080	chr3L	15086218	15086218	1360	4	1155	1.0	1.0	1.0	2.0	1166	chr3L	15085052	intron	cp309 -	chr3L	15085635	intron	cp309 -	chr3L	15086218	intron	cp309 -	chr3L_4_15085001	chr3L_15085001	RAL-356
625	chr3L	15423762	15423780	chr3L	15426606	15426624	opus	4	2840	1.0	1.5	1.2	1.8	2862	chr3L	15423762	intergenic	not near genes	chr3L	15425193	intergenic	not near genes	chr3L	15426624	intergenic	not near genes	chr3L_4_15425001	chr3L_15425001	RAL-356
628	chr3L	16443870	16443879	chr3L	16446187	16446219	Doc	7	2325	1.0	6.5	3.8	1.5	2349	chr3L	16443870	intron,intron	CG33158 +,dsx-c73A -	chr3L	16445044	intron,intron	CG33158 +,dsx-c73A -	chr3L	16446219	intron,intron	CG33158 +,dsx-c73A -	chr3L_7_16445001	chr3L_16445001	RAL-356
629	chr3L	16493978	16494013	chr3L	16494490	16494503	jockey	15	503	7.0	5.5	6.2	2.1	525	chr3L	16493978	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494240	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494503	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L_15_16490001	chr3L_16490001	RAL-356
634	chr3L	16945745	16945760	chr3L	16954881	16954893	roo	5	9132	5.5	5.0	5.2	0.8	9148	chr3L	16945745	exon	Obp73a +	chr3L	16950319	intergenic	not near genes	chr3L	16954893	5` UTR	Nc73EF +	chr3L_5_16950001	chr3L_16950001	RAL-356
636	chr3L	17085017	17085036	chr3L	17094156	17094177	roo	7	9143	2.5	2.5	2.5	2.0	9160	chr3L	17085017	intron	Rbp6 -	chr3L	17089597	intron	Rbp6 -	chr3L	17094177	intron	Rbp6 -	chr3L_7_17085001	chr3L_17085001	RAL-356
653	chr3L	18772411	18772431	chr3L	18781089	18781101	roo	6	8673	5.5	2.5	4.0	1.2	8690	chr3L	18772411	intron	ftz-f1 -	chr3L	18776756	intron	ftz-f1 -	chr3L	18781101	intron	ftz-f1 -	chr3L_6_18775001	chr3L_18775001	RAL-356
658	chr3L	19115648	19115671	chr3L	19115824	19115843	BS	4	176	4.0	4.0	4.0	0.8	195	chr3L	19115648	intron	CG14082 -	chr3L	19115746	intron	CG14082 -	chr3L	19115843	intron	CG14082 -	chr3L_4_19115001	chr3L_19115001	RAL-356
659	chr3L	19117049	19117062	chr3L	19124494	19124495	mdg1	4	7442	7.5	6.5	7.0	0.5	7446	chr3L	19117049	intron	CG14082 -	chr3L	19120772	intron	CG14082 -	chr3L	19124495	intron	CG14082 -	chr3L_4_19120001	chr3L_19120001	RAL-356
660	chr3L	19208056	19208088	chr3L	19209430	19209444	Doc	5	1368	3.0	2.0	2.5	1.4	1388	chr3L	19208056	intron	fz2 -	chr3L	19208750	intron	fz2 -	chr3L	19209444	intron	fz2 -	chr3L_5_19205001	chr3L_19205001	RAL-356
668	chr3L	19848507	19848534	chr3L	19857693	19857703	roo	5	9181	0.5	4.5	2.5	1.4	9196	chr3L	19848507	intron	Papss +	chr3L	19853105	intron	Papss +	chr3L	19857703	intron	Papss +	chr3L_5_19850001	chr3L_19850001	RAL-356
674	chr3L	20257335	20257362	chr3L	20258454	20258464	pogo	6	1112	1.5	4.0	2.8	1.6	1129	chr3L	20257335	intron	rdgC +	chr3L	20257900	intron	rdgC +	chr3L	20258464	intron	rdgC +	chr3L_6_20255001	chr3L_20255001	RAL-356
675	chr3L	20476752	20476772	chr3L	20484351	20484371	springer	5	7595	2.5	0.5	1.5	2.0	7619	chr3L	20476752	3` UTR	isoQC +	chr3L	20480562	intergenic	not near genes	chr3L	20484371	3` UTR	ZnT77C -	chr3L_5_20480001	chr3L_20480001	RAL-356
682	chr3L	21151872	21151892	chr3L	21156956	21156963	flea	4	5081	4.5	1.5	3.0	1.0	5091	chr3L	21151872	intron	Ac78C -	chr3L	21154418	intron	Ac78C -	chr3L	21156963	intron	Ac78C -	chr3L_4_21150001	chr3L_21150001	RAL-356
689	chr3L	21498839	21498870	chr3L	21500475	21500486	1360	11	1627	5.0	3.5	4.2	2.1	1647	chr3L	21498839	intron	Glg1 -	chr3L	21499662	intron	Glg1 -	chr3L	21500486	intron	Glg1 -	chr3L_11_21495001	chr3L_21495001	RAL-356
692	chr3L	21749315	21749351	chr3L	21754475	21754510	Doc	8	5153	2.5	2.0	2.2	2.5	5195	chr3L	21749315	intron	Syn1 -	chr3L	21751912	intron	Syn1 -	chr3L	21754510	intron	Syn1 -	chr3L_8_21750001	chr3L_21750001	RAL-356
699	chr3L	22555769	22555792	chr3L	22563239	22563259	blood	4	7463	3.0	3.5	3.2	1.0	7490	chr3L	22555769	intergenic	not near genes	chr3L	22559514	intergenic	not near genes	chr3L	22563259	intergenic	not near genes	chr3L_4_22555001	chr3L_22555001	RAL-356
700	chr3L	22577627	22577651	chr3L	22582415	22582429	Doc	7	4782	2.0	3.5	2.8	1.8	4802	chr3L	22577627	intergenic	not near genes	chr3L	22580028	intergenic	not near genes	chr3L	22582429	3` UTR	CG14459 -	chr3L_7_22580001	chr3L_22580001	RAL-356
701	chr3L	22617188	22617220	chr3L	22624640	22624657	blood	7	7444	5.0	1.0	3.0	1.8	7469	chr3L	22617188	intron	CG14459 -	chr3L	22620922	intron	CG14459 -	chr3L	22624657	intron	CG14459 -	chr3L_7_22620001	chr3L_22620001	RAL-356
705	chr3L	22866006	22866011	chr3L	22867115	22867144	Doc	4	1116	5.0	1.0	3.0	1.0	1138	chr3L	22866006	intron	CG33170 +	chr3L	22866575	intron	CG33170 +	chr3L	22867144	intron	CG33170 +	chr3L_4_22865001	chr3L_22865001	RAL-356
720	chr3R	4609548	4609579	chr3R	4610712	4610729	1360	8	1158	7.0	3.0	5.0	1.3	1181	chr3R	4609548	intergenic	not near genes	chr3R	4610138	intergenic	not near genes	chr3R	4610729	intergenic	not near genes	chr3R_8_4610001	chr3R_4610001	RAL-356
721	chr3R	4753257	4753271	chr3R	4757543	4757572	F-element	9	4293	5.0	6.5	5.8	1.3	4315	chr3R	4753257	intron,intron	atms +,CG44098 -	chr3R	4755414	intron,intron	atms +,CG44098 -	chr3R	4757572	intron,exon	atms +,CG44098 -	chr3R_9_4755001	chr3R_4755001	RAL-356
723	chr3R	4887479	4887509	chr3R	4894856	4894860	rover	7	7370	2.0	4.0	3.0	1.8	7381	chr3R	4887479	intergenic	not near genes	chr3R	4891170	intergenic	not near genes	chr3R	4894860	intergenic	not near genes	chr3R_7_4890001	chr3R_4890001	RAL-356
724	chr3R	5067984	5068013	chr3R	5073501	5073513	mdg3	7	5508	2.5	6.0	4.2	1.3	5529	chr3R	5067984	intergenic	not near genes	chr3R	5070748	intergenic	not near genes	chr3R	5073513	intergenic	not near genes	chr3R_7_5070001	chr3R_5070001	RAL-356
728	chr3R	5338408	5338424	chr3R	5343572	5343585	Rt1c	7	5165	4.0	9.5	6.8	0.9	5177	chr3R	5338408	intron	mtd -	chr3R	5340996	intron	mtd -	chr3R	5343585	intron	mtd -	chr3R_7_5340001	chr3R_5340001	RAL-356
731	chr3R	5445979	5445993	chr3R	5452435	5452453	Burdock	5	6459	0.0	4.0	2.0	1.7	6474	chr3R	5445979	intron	CG14669 +	chr3R	5449216	intron	CG14669 +	chr3R	5452453	intron	CG14669 +	chr3R_5_5445001	chr3R_5445001	RAL-356
733	chr3R	5746027	5746044	chr3R	5746258	5746266	pogo	5	227	2.0	2.5	2.2	1.6	239	chr3R	5746027	3` UTR	Madm +	chr3R	5746146	3` UTR	Madm +	chr3R	5746266	3` UTR	Madm +	chr3R_5_5745001	chr3R_5745001	RAL-356
738	chr3R	5809120	5809138	chr3R	5809377	5809395	pogo	4	255	1.5	3.0	2.2	1.2	275	chr3R	5809120	3` UTR	CG11000 +	chr3R	5809258	3` UTR	CG11000 +	chr3R	5809395	3` UTR	CG11000 +	chr3R_4_5805001	chr3R_5805001	RAL-356
739	chr3R	5822399	5822409	chr3R	5823544	5823576	1360	5	1158	3.0	3.5	3.2	1.2	1177	chr3R	5822399	3` UTR	CG2023 -	chr3R	5822988	3` UTR	CG2023 -	chr3R	5823576	3` UTR	CG2023 -	chr3R_5_5820001	chr3R_5820001	RAL-356
741	chr3R	5927573	5927576	chr3R	5927809	5927816	pogo	4	239	3.5	4.5	4.0	0.8	243	chr3R	5927573	intron	CG34113 -	chr3R	5927694	intron	CG34113 -	chr3R	5927816	intron	CG34113 -	chr3R_4_5925001	chr3R_5925001	RAL-356
742	chr3R	5927578	5927591	chr3R	5927799	5927831	pogo	7	229	3.0	4.0	3.5	1.6	253	chr3R	5927578	intron	CG34113 -	chr3R	5927704	intron	CG34113 -	chr3R	5927831	intron	CG34113 -	chr3R_7_5925001	chr3R_5925001	RAL-356
746	chr3R	6015962	6015991	chr3R	6024442	6024469	Tirant	4	8473	2.0	3.5	2.8	1.1	8507	chr3R	6015962	intergenic	not near genes	chr3R	6020216	intergenic	not near genes	chr3R	6024469	intergenic	not near genes	chr3R_4_6020001	chr3R_6020001	RAL-356
754	chr3R	6206296	6206307	chr3R	6206513	6206515	BS	4	212	8.5	9.0	8.8	0.4	219	chr3R	6206296	exon	Osi24 +	chr3R	6206406	intron	Osi24 +	chr3R	6206515	intron	Osi24 +	chr3R_4_6205001	chr3R_6205001	RAL-356
758	chr3R	6737505	6737526	chr3R	6739286	6739313	Doc	6	1784	4.0	2.5	3.2	1.4	1808	chr3R	6737505	intron	pb -	chr3R	6738409	intron	pb -	chr3R	6739313	intron	pb -	chr3R_6_6735001	chr3R_6735001	RAL-356
773	chr3R	8207555	8207581	chr3R	8208398	8208425	F-element	5	840	3.0	1.0	2.0	1.7	870	chr3R	8207555	intergenic	not near genes	chr3R	8207990	intergenic	not near genes	chr3R	8208425	intergenic	not near genes	chr3R_5_8205001	chr3R_8205001	RAL-356
775	chr3R	8570490	8570509	chr3R	8575112	8575143	HMS-Beagle	5	4630	5.5	2.0	3.8	1.0	4653	chr3R	8570490	intergenic	not near genes	chr3R	8572816	intergenic	not near genes	chr3R	8575143	intergenic	not near genes	chr3R_5_8570001	chr3R_8570001	RAL-356
776	chr3R	8601781	8601799	chr3R	8610927	8610950	roo	4	9150	3.5	5.0	4.2	0.8	9169	chr3R	8601781	intron	5-HT2B +	chr3R	8606366	intron	5-HT2B +	chr3R	8610950	intron	5-HT2B +	chr3R_4_8605001	chr3R_8605001	RAL-356
779	chr3R	8707357	8707392	chr3R	8709798	8709813	jockey	10	2434	3.0	8.0	5.5	1.5	2456	chr3R	8707357	intergenic	not near genes	chr3R	8708585	intergenic	not near genes	chr3R	8709813	intergenic	not near genes	chr3R_10_8705001	chr3R_8705001	RAL-356
782	chr3R	9278779	9278810	chr3R	9284037	9284062	Rt1a	8	5255	1.5	4.5	3.0	2.0	5283	chr3R	9278779	intergenic	not near genes	chr3R	9281420	intergenic	not near genes	chr3R	9284062	intergenic	not near genes	chr3R_8_9280001	chr3R_9280001	RAL-356
784	chr3R	9319588	9319608	chr3R	9320003	9320026	jockey	12	423	3.0	1.5	2.2	3.8	438	chr3R	9319588	intron	CG8861 -	chr3R	9319807	intron	CG8861 -	chr3R	9320026	intron	CG8861 -	chr3R_12_9315001	chr3R_9315001	RAL-356
817	chr3R	13143032	13143065	chr3R	13148609	13148624	mdg3	5	5564	2.5	6.0	4.2	1.0	5592	chr3R	13143032	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13145828	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13148624	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R_5_13145001	chr3R_13145001	RAL-356
837	chr3R	15132056	15132068	chr3R	15135116	15135128	Juan	7	3059	20.5	14.0	17.2	0.4	3072	chr3R	15132056	intergenic	CG42788 -	chr3R	15133592	intergenic	not near genes	chr3R	15135128	intergenic	CG6912 -	chr3R_7_15130001	chr3R_15130001	RAL-356
838	chr3R	15132070	15132089	chr3R	15135108	15135134	Juan	11	3050	12.0	10.0	11.0	0.9	3064	chr3R	15132070	intergenic	CG42788 -	chr3R	15133602	intergenic	not near genes	chr3R	15135134	intergenic	CG6912 -	chr3R_11_15130001	chr3R_15130001	RAL-356
842	chr3R	15601170	15601188	chr3R	15608692	15608709	412	4	7522	4.0	7.0	5.5	0.6	7539	chr3R	15601170	intergenic	not near genes	chr3R	15604940	intergenic	not near genes	chr3R	15608709	intergenic	not near genes	chr3R_4_15600001	chr3R_15600001	RAL-356
843	chr3R	15618749	15618764	chr3R	15626209	15626238	blood	5	7465	1.5	4.5	3.0	1.2	7489	chr3R	15618749	intergenic	not near genes	chr3R	15622494	intergenic	not near genes	chr3R	15626238	intergenic	not near genes	chr3R_5_15620001	chr3R_15620001	RAL-356
857	chr3R	16756317	16756350	chr3R	16762508	16762537	diver	10	6182	2.5	2.0	2.2	3.1	6220	chr3R	16756317	intron	bxd -	chr3R	16759427	intron	bxd -	chr3R	16762537	intron	bxd -	chr3R_10_16755001	chr3R_16755001	RAL-356
863	chr3R	17925860	17925889	chr3R	17927318	17927356	hobo	11	1458	3.0	13.0	8.0	1.2	1496	chr3R	17925860	intron	cpo +	chr3R	17926608	intron	cpo +	chr3R	17927356	intron	cpo +	chr3R_11_17925001	chr3R_17925001	RAL-356
865	chr3R	18032796	18032811	chr3R	18040457	18040471	opus	5	7661	0.0	0.5	0.2	4.2	7675	chr3R	18032796	intergenic	not near genes	chr3R	18036634	intergenic	not near genes	chr3R	18040471	intergenic	not near genes	chr3R_5_18035001	chr3R_18035001	RAL-356
876	chr3R	19193004	19193009	chr3R	19197285	19197313	F-element	4	4293	0.0	3.0	1.5	1.6	4309	chr3R	19193004	intron	CG31475 +	chr3R	19195158	intron	CG31475 +	chr3R	19197313	intron	CG31475 +	chr3R_4_19195001	chr3R_19195001	RAL-356
895	chr3R	20854507	20854517	chr3R	20859283	20859293	Doc	5	4778	1.0	5.0	3.0	1.2	4786	chr3R	20854507	intron	Ir93a -	chr3R	20856900	intron	Ir93a -	chr3R	20859293	exon	Ir93a -	chr3R_5_20855001	chr3R_20855001	RAL-356
904	chr3R	21141694	21141701	chr3R	21150157	21150166	Tirant	5	8463	6.5	8.0	7.2	0.6	8472	chr3R	21141694	intron	SNF4Agamma +	chr3R	21145930	intron	SNF4Agamma +	chr3R	21150166	intron	SNF4Agamma +	chr3R_5_21145001	chr3R_21145001	RAL-356
912	chr3R	21761130	21761150	chr3R	21768511	21768521	mdg1	6	7379	4.0	4.0	4.0	1.2	7391	chr3R	21761130	exon	CG42335 +	chr3R	21764826	intron	CG42335 +	chr3R	21768521	exon	CG42335 +	chr3R_6_21760001	chr3R_21760001	RAL-356
924	chr3R	22450547	22450579	chr3R	22453186	22453199	NOF	7	2635	3.0	4.0	3.5	1.6	2652	chr3R	22450547	intron	CG34376 +	chr3R	22451873	intron	CG34376 +	chr3R	22453199	intron	CG34376 +	chr3R_7_22450001	chr3R_22450001	RAL-356
940	chr3R	23684714	23684729	chr3R	23685183	23685215	roo	8	470	3.0	10.5	6.8	1.0	501	chr3R	23684714	intron	CG18754 +	chr3R	23684964	intron	CG18754 +	chr3R	23685215	exon	CG18754 +	chr3R_8_23680001	chr3R_23680001	RAL-356
943	chr3R	24072087	24072115	chr3R	24072523	24072529	jockey	6	426	6.5	0.0	3.2	1.4	442	chr3R	24072087	intron	4EHP -	chr3R	24072308	intron	4EHP -	chr3R	24072529	intron	4EHP -	chr3R_6_24070001	chr3R_24070001	RAL-356
944	chr3R	24076932	24076946	chr3R	24078380	24078399	hobo	6	1460	3.5	6.0	4.8	1.0	1467	chr3R	24076932	intron	4EHP -	chr3R	24077666	intron	4EHP -	chr3R	24078399	intron	4EHP -	chr3R_6_24075001	chr3R_24075001	RAL-356
945	chr3R	24207232	24207246	chr3R	24212289	24212321	flea	4	5066	3.5	2.0	2.8	1.1	5089	chr3R	24207232	intron	twin -	chr3R	24209776	intron	twin -	chr3R	24212321	intron	twin -	chr3R_4_24205001	chr3R_24205001	RAL-356
948	chr3R	24493281	24493309	chr3R	24493505	24493531	BS	6	224	2.0	4.0	3.0	1.5	250	chr3R	24493281	intergenic	not near genes	chr3R	24493406	intergenic	not near genes	chr3R	24493531	intergenic	not near genes	chr3R_6_24490001	chr3R_24490001	RAL-356
952	chr3R	24927129	24927155	chr3R	24931916	24931946	Doc	7	4783	3.0	2.5	2.8	1.8	4817	chr3R	24927129	intergenic	Trf4-2 +	chr3R	24929538	intergenic	not near genes	chr3R	24931946	intergenic	CG11771 +	chr3R_7_24925001	chr3R_24925001	RAL-356
960	chr3R	25832702	25832724	chr3R	25841871	25841902	roo	10	9175	5.5	5.0	5.2	1.6	9200	chr3R	25832702	exon	alpha4GT2 +	chr3R	25837302	intron	alpha4GT2 +	chr3R	25841902	exon	alpha4GT2 +	chr3R_10_25835001	chr3R_25835001	RAL-356
970	chr3R	26376331	26376357	chr3R	26385487	26385517	roo	6	9159	2.5	1.5	2.0	2.0	9186	chr3R	26376331	intergenic	not near genes	chr3R	26380924	intergenic	not near genes	chr3R	26385517	intergenic	not near genes	chr3R_6_26380001	chr3R_26380001	RAL-356
973	chr3R	26558345	26558360	chr3R	26565637	26565669	Stalker4	5	7303	2.5	3.5	3.0	1.2	7324	chr3R	26558345	intron	scrib +	chr3R	26562007	intron	scrib +	chr3R	26565669	intron	scrib +	chr3R_5_26560001	chr3R_26560001	RAL-356
979	chr3R	26810573	26810582	chr3R	26811058	26811063	roo	4	484	1.5	8.5	5.0	0.7	490	chr3R	26810573	intron	Tl +	chr3R	26810818	intron	Tl +	chr3R	26811063	intron	Tl +	chr3R_4_26810001	chr3R_26810001	RAL-356
983	chr3R	27140536	27140548	chr3R	27148125	27148141	412	8	7597	5.5	5.0	5.2	1.3	7605	chr3R	27140536	intron	CG6051 -	chr3R	27144338	intron	CG6051 -	chr3R	27148141	intron	CG6051 -	chr3R_8_27140001	chr3R_27140001	RAL-356
993	chr3R	27856763	27856780	chr3R	27858246	27858251	hopper2	5	1479	5.0	2.5	3.8	1.0	1488	chr3R	27856763	intron	CG34353 -	chr3R	27857507	intron	CG34353 -	chr3R	27858251	intron	CG34353 -	chr3R_5_27855001	chr3R_27855001	RAL-356
994	chr3R	27856782	27856793	chr3R	27858242	27858276	hopper2	8	1467	3.0	2.5	2.8	2.1	1494	chr3R	27856782	intron	CG34353 -	chr3R	27857529	intron	CG34353 -	chr3R	27858276	intron	CG34353 -	chr3R_8_27855001	chr3R_27855001	RAL-356
995	chr3R	27862953	27862987	chr3R	27868258	27868284	Transpac	4	5298	3.0	0.5	1.8	1.4	5331	chr3R	27862953	intron	CG34353 -	chr3R	27865618	intron	CG34353 -	chr3R	27868284	intron	CG34353 -	chr3R_4_27865001	chr3R_27865001	RAL-356
996	chr3R	27875717	27875733	chr3R	27882753	27882784	297	4	7045	2.5	2.0	2.2	1.2	7067	chr3R	27875717	intron	CG34353 -	chr3R	27879250	intron	CG34353 -	chr3R	27882784	intron	CG34353 -	chr3R_4_27875001	chr3R_27875001	RAL-356
999	chr3R	28253346	28253370	chr3R	28255846	28255880	jockey	7	2502	4.5	2.0	3.2	1.7	2534	chr3R	28253346	intergenic	not near genes	chr3R	28254613	intergenic	not near genes	chr3R	28255880	intergenic	not near genes	chr3R_7_28250001	chr3R_28250001	RAL-356
1000	chr3R	28302103	28302116	chr3R	28302542	28302543	jockey	4	435	3.0	3.0	3.0	1.0	440	chr3R	28302103	intergenic	not near genes	chr3R	28302323	intergenic	not near genes	chr3R	28302543	intergenic	not near genes	chr3R_4_28300001	chr3R_28300001	RAL-356
1001	chr3R	28302119	28302136	chr3R	28302539	28302562	jockey	4	427	0.5	2.5	1.5	1.6	443	chr3R	28302119	intergenic	not near genes	chr3R	28302340	intergenic	not near genes	chr3R	28302562	intergenic	not near genes	chr3R_4_28300001	chr3R_28300001	RAL-356
1010	chr3R	28763910	28763922	chr3R	28771336	28771345	Stalker4	4	7426	0.0	0.5	0.2	3.3	7435	chr3R	28763910	intergenic	not near genes	chr3R	28767628	intergenic	not near genes	chr3R	28771345	intergenic	not near genes	chr3R_4_28765001	chr3R_28765001	RAL-356
1011	chr3R	28792871	28792904	chr3R	28797966	28797985	jockey	9	5090	2.0	2.0	2.0	3.0	5114	chr3R	28792871	intergenic	not near genes	chr3R	28795428	intergenic	not near genes	chr3R	28797985	intergenic	not near genes	chr3R_9_28795001	chr3R_28795001	RAL-356
1020	chr3R	29406621	29406636	chr3R	29407907	29407911	jockey	5	1283	7.5	5.0	6.2	0.7	1290	chr3R	29406621	intron	Ptp99A +	chr3R	29407266	intron	Ptp99A +	chr3R	29407911	intron	Ptp99A +	chr3R_5_29405001	chr3R_29405001	RAL-356
1021	chr3R	29406642	29406650	chr3R	29407905	29407922	jockey	6	1272	5.0	4.0	4.5	1.1	1280	chr3R	29406642	intron	Ptp99A +	chr3R	29407282	intron	Ptp99A +	chr3R	29407922	intron	Ptp99A +	chr3R_6_29405001	chr3R_29405001	RAL-356
1027	chr3R	29882039	29882051	chr3R	29891182	29891196	roo	4	9146	1.5	4.5	3.0	1.0	9157	chr3R	29882039	intron	CG31038 +	chr3R	29886618	intron	CG31038 +	chr3R	29891196	intron	CG31038 +	chr3R_4_29885001	chr3R_29885001	RAL-356
1030	chr3R	30084860	30084885	chr3R	30086323	30086352	hobo	8	1463	2.0	4.0	3.0	2.0	1492	chr3R	30084860	intron	sima +	chr3R	30085606	intron	sima +	chr3R	30086352	intron	sima +	chr3R_8_30085001	chr3R_30085001	RAL-356
1032	chr3R	30396225	30396247	chr3R	30404487	30404509	roo	4	8260	2.0	2.0	2.0	1.3	8284	chr3R	30396225	intergenic	not near genes	chr3R	30400367	intergenic	not near genes	chr3R	30404509	5` UTR	CR45570 +	chr3R_4_30400001	chr3R_30400001	RAL-356
1036	chr3R	30679517	30679550	chr3R	30686986	30687019	blood	10	7468	0.0	4.0	2.0	3.3	7502	chr3R	30679517	intergenic	not near genes	chr3R	30683268	intergenic	not near genes	chr3R	30687019	intergenic	not near genes	chr3R_10_30680001	chr3R_30680001	RAL-356
1043	chr3R	31074230	31074258	chr3R	31081828	31081847	springer	5	7594	3.0	0.5	1.8	1.8	7617	chr3R	31074230	intron	Sox100B +	chr3R	31078038	intron	Sox100B +	chr3R	31081847	intron	Sox100B +	chr3R_5_31075001	chr3R_31075001	RAL-356
1048	chr3R	31413097	31413120	chr3R	31418290	31418312	copia	12	5187	4.0	1.5	2.8	3.2	5215	chr3R	31413097	intron	Gprk2 +	chr3R	31415704	intron	Gprk2 +	chr3R	31418312	intron	Gprk2 +	chr3R_12_31415001	chr3R_31415001	RAL-356
1053	chr3R	31691551	31691561	chr3R	31696299	31696309	Doc	5	4752	6.5	8.0	7.2	0.6	4758	chr3R	31691551	intergenic	not near genes	chr3R	31693930	intergenic	not near genes	chr3R	31696309	intergenic	not near genes	chr3R_5_31690001	chr3R_31690001	RAL-356
1060	chr4	671605	671633	chr4	680188	680215	Tirant	7	8581	2.5	3.0	2.8	1.8	8610	chr4	671605	intron	CG11360 +	chr4	675910	intron	CG11360 +	chr4	680215	intron	CG11360 +	chr4_7_675001	chr4_675001	RAL-356
1065	chrX	551438	551455	chrX	558982	559008	412	4	7551	6.0	2.0	4.0	0.8	7570	chrX	551438	intron	Appl +	chrX	555223	intron	Appl +	chrX	559008	intron	Appl +	chrX_4_555001	chrX_555001	RAL-356
1071	chrX	827618	827633	chrX	835396	835410	roo	5	7786	2.0	2.5	2.2	1.6	7792	chrX	827618	intron	CG43867 -	chrX	831514	intron	CG43867 -	chrX	835410	intron	CG43867 -	chrX_5_830001	chrX_830001	RAL-356
1072	chrX	906714	906728	chrX	908499	908501	S-element	6	1786	5.0	6.5	5.8	0.9	1787	chrX	906714	intron	CG43867 -	chrX	907608	intron	CG43867 -	chrX	908501	intron	CG43867 -	chrX_6_905001	chrX_905001	RAL-356
1073	chrX	906731	906733	chrX	908493	908516	S-element	4	1777	4.5	6.5	5.5	0.6	1785	chrX	906731	intron	CG43867 -	chrX	907624	intron	CG43867 -	chrX	908516	intron	CG43867 -	chrX_4_905001	chrX_905001	RAL-356
1077	chrX	1357785	1357806	chrX	1367949	1367966	Doc	4	10162	2.0	2.0	2.0	1.3	10181	chrX	1357785	intergenic	png -	chrX	1362876	intergenic	not near genes	chrX	1367966	intergenic	not near genes	chrX_4_1360001	chrX_1360001	RAL-356
1080	chrX	1518059	1518066	chrX	1523440	1523453	jockey	5	5395	2.5	1.0	1.8	1.8	5394	chrX	1518059	intergenic	inc +	chrX	1520756	intergenic	not near genes	chrX	1523453	intergenic	not near genes	chrX_5_1520001	chrX_1520001	RAL-356
1081	chrX	1627977	1628006	chrX	1635443	1635448	gtwin	9	7455	2.0	1.0	1.5	3.6	7471	chrX	1627977	intron,intron	Mur2B -,br +	chrX	1631712	intron,intron	Mur2B -,br +	chrX	1635448	intron,intron	Mur2B -,br +	chrX_9_1630001	chrX_1630001	RAL-356
1082	chrX	1954898	1954917	chrX	1962827	1962838	Stalker2	6	7928	0.5	2.0	1.2	2.7	7940	chrX	1954898	intron	Hr4 +	chrX	1958868	intron	Hr4 +	chrX	1962838	intron	Hr4 +	chrX_6_1955001	chrX_1955001	RAL-356
1085	chrX	2399848	2399864	chrX	2408190	2408215	roo	4	8347	5.0	4.0	4.5	0.7	8367	chrX	2399848	intergenic	not near genes	chrX	2404032	intergenic	not near genes	chrX	2408215	intergenic	not near genes	chrX_4_2400001	chrX_2400001	RAL-356
1087	chrX	3058029	3058043	chrX	3058261	3058284	pogo	4	236	1.0	1.0	1.0	2.0	255	chrX	3058029	intron	kirre +	chrX	3058156	intron	kirre +	chrX	3058284	intron	kirre +	chrX_4_3055001	chrX_3055001	RAL-356
1091	chrX	3415015	3415050	chrX	3421200	3421227	3S18	4	6176	1.0	1.0	1.0	2.0	6212	chrX	3415015	intron,intron	CR44999 +,CG12535 -	chrX	3418121	intron,intron	CR44999 +,CG12535 -	chrX	3421227	intron,intron	CR44999 +,CG12535 -	chrX_4_3415001	chrX_3415001	RAL-356
1092	chrX	3597549	3597583	chrX	3619717	3619751	roo	10	22163	3.5	5.5	4.5	1.8	22202	chrX	3597549	intron	AstA-R1 +	chrX	3608650	intron	AstA-R1 +	chrX	3619751	intron	AstA-R1 +	chrX_10_3605001	chrX_3605001	RAL-356
1094	chrX	3726789	3726796	chrX	3730166	3730168	NOF	4	3382	1.5	2.0	1.8	1.4	3379	chrX	3726789	intron	tlk +	chrX	3728478	intron	tlk +	chrX	3730168	intron	tlk +	chrX_4_3725001	chrX_3725001	RAL-356
1095	chrX	3842325	3842338	chrX	3842566	3842578	pogo	5	240	3.0	4.0	3.5	1.1	253	chrX	3842325	intron	ec +	chrX	3842452	intron	ec +	chrX	3842578	intron	ec +	chrX_5_3840001	chrX_3840001	RAL-356
1103	chrX	4731825	4731845	chrX	4736903	4736924	jockey	9	5081	4.5	3.5	4.0	1.8	5099	chrX	4731825	intergenic	not near genes	chrX	4734374	intergenic	not near genes	chrX	4736924	intergenic	not near genes	chrX_9_4730001	chrX_4730001	RAL-356
1104	chrX	4763255	4763283	chrX	4763738	4763755	Stalker4	8	483	2.5	0.5	1.5	3.2	500	chrX	4763255	intergenic	not near genes	chrX	4763505	intergenic	not near genes	chrX	4763755	intergenic	not near genes	chrX_8_4760001	chrX_4760001	RAL-356
1105	chrX	4792402	4792406	chrX	4792813	4792839	jockey	4	427	1.5	3.5	2.5	1.1	437	chrX	4792402	intergenic	not near genes	chrX	4792620	intergenic	not near genes	chrX	4792839	intergenic	not near genes	chrX_4_4790001	chrX_4790001	RAL-356
1107	chrX	4990065	4990075	chrX	4997261	4997275	roo	4	7202	1.5	1.0	1.2	1.8	7210	chrX	4990065	intron	CR44833 -	chrX	4993670	intron	CR44833 -	chrX	4997275	intron	CR44833 -	chrX_4_4990001	chrX_4990001	RAL-356
1108	chrX	5096278	5096303	chrX	5103843	5103868	springer	5	7564	2.5	3.0	2.8	1.3	7590	chrX	5096278	intron,intron	CG15465 +,rg +	chrX	5100073	intron,intron	CG15465 +,rg +	chrX	5103868	intron,intron	CG15465 +,rg +	chrX_5_5100001	chrX_5100001	RAL-356
1109	chrX	5338721	5338739	chrX	5339968	5339975	jockey	4	1245	1.5	2.0	1.8	1.4	1254	chrX	5338721	intergenic	not near genes	chrX	5339348	intergenic	not near genes	chrX	5339975	intergenic	SK +	chrX_4_5335001	chrX_5335001	RAL-356
1110	chrX	5481070	5481076	chrX	5485014	5485025	I-element	4	3948	1.0	0.0	0.5	2.7	3955	chrX	5481070	intron	SPR +	chrX	5483048	intron	SPR +	chrX	5485025	intron	SPR +	chrX_4_5480001	chrX_5480001	RAL-356
1116	chrX	6335215	6335241	chrX	6337725	6337738	Tirant	6	2504	0.5	2.0	1.2	2.7	2523	chrX	6335215	intergenic	not near genes	chrX	6336476	intergenic	not near genes	chrX	6337738	intergenic	CG3842 +	chrX_6_6335001	chrX_6335001	RAL-356
1117	chrX	6392875	6392889	chrX	6397632	6397640	Doc	6	4759	4.0	0.5	2.2	1.9	4765	chrX	6392875	intergenic	not near genes	chrX	6395258	intergenic	not near genes	chrX	6397640	intergenic	not near genes	chrX_6_6395001	chrX_6395001	RAL-356
1118	chrX	6392890	6392901	chrX	6397628	6397649	Doc	8	4752	2.0	0.5	1.2	3.6	4759	chrX	6392890	intergenic	not near genes	chrX	6395270	intergenic	not near genes	chrX	6397649	intergenic	not near genes	chrX_8_6395001	chrX_6395001	RAL-356
1119	chrX	6562824	6562845	chrX	6571303	6571320	Tirant	6	8471	5.0	6.0	5.5	0.9	8496	chrX	6562824	intron	CG34417 +	chrX	6567072	intron	CG34417 +	chrX	6571320	intron	CG34417 +	chrX_6_6565001	chrX_6565001	RAL-356
1123	chrX	7023621	7023634	chrX	7030992	7031024	Tabor	5	7382	2.0	3.0	2.5	1.4	7403	chrX	7023621	intron	CG12541 -	chrX	7027322	intron	CG12541 -	chrX	7031024	intron	CG12541 -	chrX_5_7025001	chrX_7025001	RAL-356
1127	chrX	8031432	8031460	chrX	8035735	8035749	Juan	17	4300	9.0	4.5	6.8	2.2	4317	chrX	8031432	intergenic	not near genes	chrX	8033590	intergenic	not near genes	chrX	8035749	3` UTR	CG2233 -	chrX_17_8030001	chrX_8030001	RAL-356
1128	chrX	8030969	8031004	chrX	8037403	8037436	Juan	36	6438	52.5	56.0	54.2	0.7	6467	chrX	8030969	intergenic	not near genes	chrX	8034202	intergenic	not near genes	chrX	8037436	exon	CG2233 -	chrX_36_8030001	chrX_8030001	RAL-356
1131	chrX	8922346	8922352	chrX	8922758	8922777	jockey	4	421	4.5	2.0	3.2	1.0	431	chrX	8922346	intron	rdgA +	chrX	8922562	intron	rdgA +	chrX	8922777	intron	rdgA +	chrX_4_8920001	chrX_8920001	RAL-356
1132	chrX	8948765	8948781	chrX	8956274	8956291	roo	4	7510	1.5	1.0	1.2	1.8	7526	chrX	8948765	intron	rdgA +	chrX	8952528	intron	rdgA +	chrX	8956291	intron	rdgA +	chrX_4_8950001	chrX_8950001	RAL-356
1135	chrX	9508140	9508159	chrX	9509654	9509667	jockey	4	1514	3.0	3.5	3.2	1.0	1527	chrX	9508140	intron	CG32700 -	chrX	9508904	intron	CG32700 -	chrX	9509667	intron	CG32700 -	chrX_4_9505001	chrX_9505001	RAL-356
1136	chrX	9575793	9575803	chrX	9576117	9576118	mdg3	4	322	8.5	3.0	5.8	0.6	325	chrX	9575793	intron,exon	CG32699 -,CG42395 -	chrX	9575956	intron,intron	CG32699 -,CG42395 -	chrX	9576118	intron,intron	CG32699 -,CG42395 -	chrX_4_9575001	chrX_9575001	RAL-356
1137	chrX	9575805	9575820	chrX	9576114	9576128	mdg3	8	316	6.5	3.0	4.8	1.4	323	chrX	9575805	intron,exon	CG32699 -,CG42395 -	chrX	9575966	intron,intron	CG32699 -,CG42395 -	chrX	9576128	intron,exon	CG32699 -,CG42395 -	chrX_8_9575001	chrX_9575001	RAL-356
1144	chrX	10550854	10550887	chrX	10552317	10552339	hobo	14	1457	2.5	2.5	2.5	4.0	1485	chrX	10550854	intron	spri -	chrX	10551596	intron	spri -	chrX	10552339	intron	spri -	chrX_14_10550001	chrX_10550001	RAL-356
1146	chrX	10686061	10686080	chrX	10691186	10691210	roo	7	5131	1.5	1.0	1.2	3.2	5149	chrX	10686061	intron	X11Lbeta +	chrX	10688636	intron	X11Lbeta +	chrX	10691210	intron	X11Lbeta +	chrX_7_10685001	chrX_10685001	RAL-356
1148	chrX	11268570	11268582	chrX	11270057	11270063	hopper2	4	1485	6.0	4.5	5.2	0.6	1493	chrX	11268570	intron	CG44422 -	chrX	11269316	intron	CG44422 -	chrX	11270063	intron	CG44422 -	chrX_4_11265001	chrX_11265001	RAL-356
1149	chrX	11312063	11312094	chrX	11319416	11319435	Stalker2	5	7347	0.0	5.5	2.8	1.3	7372	chrX	11312063	intergenic	not near genes	chrX	11315749	intergenic	not near genes	chrX	11319435	intergenic	not near genes	chrX_5_11315001	chrX_11315001	RAL-356
1156	chrX	9845361	9845361	chrX	12546495	12546497	gypsy5	5	2701135	12.0	14.0	13.0	0.4	2701136	chrX	9845361	intron	CG32698 +	chrX	11195929	intergenic	not near genes	chrX	12546497	intron	CG43921 -	chrX_5_11195001	chrX_11195001	RAL-356
1159	chrX	14105048	14105053	chrX	14114176	14114181	roo	4	9130	4.0	6.0	5.0	0.7	9133	chrX	14105048	intergenic	not near genes	chrX	14109614	intergenic	not near genes	chrX	14114181	5` UTR	CR44657 +	chrX_4_14105001	chrX_14105001	RAL-356
1164	chrX	14636470	14636498	chrX	14641896	14641909	I-element	5	5427	2.5	2.5	2.5	1.4	5439	chrX	14636470	intron	NetA -	chrX	14639190	intron	NetA -	chrX	14641909	intron	NetA -	chrX_5_14635001	chrX_14635001	RAL-356
1169	chrX	15413050	15413064	chrX	15417352	15417363	Juan	5	4301	6.5	2.5	4.5	0.9	4313	chrX	15413050	intron	Cngl -	chrX	15415206	intron	Cngl -	chrX	15417363	intron	Cngl -	chrX_5_15415001	chrX_15415001	RAL-356
1170	chrX	15413066	15413084	chrX	15417351	15417371	Juan	5	4288	3.0	2.5	2.8	1.3	4305	chrX	15413066	intron	Cngl -	chrX	15415218	intron	Cngl -	chrX	15417371	intron	Cngl -	chrX_5_15415001	chrX_15415001	RAL-356
1171	chrX	15435688	15435705	chrX	15436116	15436128	rover	5	428	0.5	3.5	2.0	1.7	440	chrX	15435688	intron	Cngl -	chrX	15435908	intron	Cngl -	chrX	15436128	intron	Cngl -	chrX_5_15435001	chrX_15435001	RAL-356
1187	chrX	19060417	19060438	chrX	19065190	19065202	Doc	6	4772	1.0	1.0	1.0	3.0	4785	chrX	19060417	intron	CG14190 +	chrX	19062810	intron	CG14190 +	chrX	19065202	intron	CG14190 +	chrX_6_19060001	chrX_19060001	RAL-356
1189	chrX	19472126	19472158	chrX	19472693	19472700	jockey	5	556	2.5	6.0	4.2	1.0	574	chrX	19472126	intergenic	kek5 +	chrX	19472413	intergenic	kek5 +	chrX	19472700	intergenic	not near genes	chrX_5_19470001	chrX_19470001	RAL-356
1190	chrX	19710083	19710096	chrX	19711860	19711877	S-element	5	1779	2.5	1.5	2.0	1.7	1794	chrX	19710083	intron	meso18E -	chrX	19710980	intron	meso18E -	chrX	19711877	intron	meso18E -	chrX_5_19710001	chrX_19710001	RAL-356
1197	chrX	21086137	21086160	chrX	21087163	21087180	jockey	4	1024	4.0	0.5	2.2	1.2	1043	chrX	21086137	intergenic	not near genes	chrX	21086658	intergenic	not near genes	chrX	21087180	intergenic	not near genes	chrX_4_21085001	chrX_21085001	RAL-356
1205	chrX	23036382	23036414	chrX	23037783	23037794	pogo	5	1396	1.0	0.5	0.8	2.8	1412	chrX	23036382	intron	CG12061 +	chrX	23037088	intron	CG12061 +	chrX	23037794	intron	CG12061 +	chrX_5_23035001	chrX_23035001	RAL-356