SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 47475 47491 chr2L 52562 52596 jockey 9 5096 9.0 6.0 7.5 1.1 5121 chr2L 47475 intron Cda5 - chr2L 50036 intron Cda5 - chr2L 52596 intron Cda5 - chr2L_9_50001 chr2L_50001 RAL-356 2 chr2L 73787 73814 chr2L 73896 73923 6 104 4.0 3.5 3.8 1.2 136 chr2L 73787 3` UTR,intron CR44987 -,galectin + chr2L 73855 intron galectin + chr2L 73923 intron galectin + chr2L_6_70001 chr2L_70001 RAL-356 3 chr2L 263310 263329 chr2L 263445 263475 4 141 3.0 4.0 3.5 0.9 165 chr2L 263310 intron,3` UTR CG3645 -,CG17075 - chr2L 263392 intron,3` UTR CG3645 -,CG17075 - chr2L 263475 intron,3` UTR CG3645 -,CG17075 - chr2L_4_260001 chr2L_260001 RAL-356 4 chr2L 347897 347917 chr2L 355388 355417 blood 6 7488 1.5 1.5 1.5 2.4 7520 chr2L 347897 3` UTR Plc21C + chr2L 351657 intron Plc21C + chr2L 355417 3` UTR Plc21C + chr2L_6_350001 chr2L_350001 RAL-356 5 chr2L 395752 395776 chr2L 395826 395832 7 71 2.0 1.0 1.5 2.8 80 chr2L 395752 intergenic CR43718 + chr2L 395792 intergenic CR43718 + chr2L 395832 intergenic CR43718 + chr2L_7_395001 chr2L_395001 RAL-356 6 chr2L 590635 590653 chr2L 590721 590754 4 90 3.5 4.5 4.0 0.8 119 chr2L 590635 intron Gsc - chr2L 590694 intron Gsc - chr2L 590754 intron Gsc - chr2L_4_590001 chr2L_590001 RAL-356 7 chr2L 686928 686950 chr2L 695958 695984 roo 8 9031 3.5 2.0 2.8 2.1 9056 chr2L 686928 intron ds - chr2L 691456 intron ds - chr2L 695984 intron ds - chr2L_8_690001 chr2L_690001 RAL-356 8 chr2L 748203 748237 chr2L 748282 748316 14 71 5.5 5.5 5.5 2.2 113 chr2L 748203 intergenic not near genes chr2L 748260 intergenic not near genes chr2L 748316 intergenic not near genes chr2L_14_745001 chr2L_745001 RAL-356 9 chr2L 770476 770494 chr2L 772246 772249 Bari1 4 1770 4.0 1.5 2.8 1.1 1773 chr2L 770476 intergenic not near genes chr2L 771362 intergenic not near genes chr2L 772249 intergenic CR44614 + chr2L_4_770001 chr2L_770001 RAL-356 10 chr2L 877851 877873 chr2L 877921 877938 14 73 7.5 3.5 5.5 2.2 87 chr2L 877851 3` UTR,exon CG15824 -,ninaA + chr2L 877894 3` UTR,intron CG15824 -,ninaA + chr2L 877938 3` UTR,intron CG15824 -,ninaA + chr2L_14_875001 chr2L_875001 RAL-356 11 chr2L 906555 906567 chr2L 906624 906634 6 73 0.0 2.0 1.0 3.0 79 chr2L 906555 intergenic not near genes chr2L 906594 intergenic not near genes chr2L 906634 intergenic not near genes chr2L_6_905001 chr2L_905001 RAL-356 12 chr2L 927868 927885 chr2L 928006 928016 4 136 4.0 1.5 2.8 1.1 148 chr2L 927868 intron CG4341 + chr2L 927942 intron CG4341 + chr2L 928016 intron CG4341 + chr2L_4_925001 chr2L_925001 RAL-356 13 chr2L 1028857 1028870 chr2L 1028940 1028958 4 89 3.5 2.5 3.0 1.0 101 chr2L 1028857 intron IA-2 - chr2L 1028908 intron IA-2 - chr2L 1028958 intron IA-2 - chr2L_4_1025001 chr2L_1025001 RAL-356 14 chr2L 1220139 1220158 chr2L 1227602 1227605 blood 4 7460 6.0 3.0 4.5 0.7 7466 chr2L 1220139 intron CG42329 + chr2L 1223872 intron CG42329 + chr2L 1227605 intron CG42329 + chr2L_4_1220001 chr2L_1220001 RAL-356 15 chr2L 1464158 1464180 chr2L 1464390 1464412 4 232 7.0 3.5 5.2 0.6 254 chr2L 1464158 intergenic not near genes chr2L 1464285 intergenic not near genes chr2L 1464412 intergenic not near genes chr2L_4_1460001 chr2L_1460001 RAL-356 16 chr2L 1467498 1467531 chr2L 1467578 1467611 9 73 3.0 2.5 2.8 2.4 113 chr2L 1467498 intergenic not near genes chr2L 1467554 intergenic not near genes chr2L 1467611 intergenic not near genes chr2L_9_1465001 chr2L_1465001 RAL-356 17 chr2L 1496527 1496551 chr2L 1496600 1496617 11 70 2.5 3.5 3.0 2.8 90 chr2L 1496527 exon CG31926 + chr2L 1496572 exon CG31926 + chr2L 1496617 exon CG31926 + chr2L_11_1495001 chr2L_1495001 RAL-356 18 chr2L 1570698 1570721 chr2L 1573570 1573578 F-element 7 2864 3.5 3.0 3.2 1.7 2880 chr2L 1570698 intron haf + chr2L 1572138 intron haf + chr2L 1573578 intron haf + chr2L_7_1570001 chr2L_1570001 RAL-356 19 chr2L 1678985 1679006 chr2L 1686445 1686445 blood 5 7454 0.5 4.0 2.2 1.6 7460 chr2L 1678985 intron chinmo + chr2L 1682715 intron chinmo + chr2L 1686445 intron chinmo + chr2L_5_1680001 chr2L_1680001 RAL-356 20 chr2L 1711360 1711386 chr2L 1711678 1711710 mdg3 13 317 5.0 4.0 4.5 2.4 350 chr2L 1711360 3` UTR,3` UTR mRpL48 +,frtz - chr2L 1711535 3` UTR frtz - chr2L 1711710 3` UTR frtz - chr2L_13_1710001 chr2L_1710001 RAL-356 21 chr2L 1828409 1828434 chr2L 1828487 1828503 9 73 3.0 1.5 2.2 2.8 94 chr2L 1828409 intergenic not near genes chr2L 1828456 intergenic not near genes chr2L 1828503 intergenic not near genes chr2L_9_1825001 chr2L_1825001 RAL-356 22 chr2L 1872179 1872359 chr2L 1872272 1872488 6 104 2.0 2.0 2.0 2.0 309 chr2L 1872179 intron CG31663 - chr2L 1872334 intron CG31663 - chr2L 1872488 intron CG31663 - chr2L_6_1870001 chr2L_1870001 RAL-356 23 chr2L 1883417 1883447 chr2L 1883999 1884026 4 573 0.0 2.5 1.2 1.8 609 chr2L 1883417 intron CG15358 - chr2L 1883722 intron CG15358 - chr2L 1884026 exon CG15358 - chr2L_4_1880001 chr2L_1880001 RAL-356 24 chr2L 2100380 2100392 chr2L 2109527 2109542 roo 4 9146 9.0 4.0 6.5 0.5 9162 chr2L 2100380 intron dpr3 - chr2L 2104961 intron dpr3 - chr2L 2109542 intron dpr3 - chr2L_4_2100001 chr2L_2100001 RAL-356 25 chr2L 2100394 2100402 chr2L 2109523 2109553 roo 4 9143 7.0 3.5 5.2 0.6 9159 chr2L 2100394 intron dpr3 - chr2L 2104974 intron dpr3 - chr2L 2109553 intron dpr3 - chr2L_4_2100001 chr2L_2100001 RAL-356 26 chr2L 2112128 2112144 chr2L 2119777 2119798 opus 6 7650 3.5 3.0 3.2 1.4 7670 chr2L 2112128 intergenic not near genes chr2L 2115963 intergenic not near genes chr2L 2119798 intergenic not near genes chr2L_6_2115001 chr2L_2115001 RAL-356 27 chr2L 2311071 2311084 chr2L 2311166 2311179 4 93 5.0 0.0 2.5 1.1 108 chr2L 2311071 intron CG9967 - chr2L 2311125 intron CG9967 - chr2L 2311179 intron CG9967 - chr2L_4_2310001 chr2L_2310001 RAL-356 28 chr2L 2618039 2618062 chr2L 2618118 2618123 6 75 5.0 6.5 5.8 0.9 84 chr2L 2618039 intergenic not near genes chr2L 2618081 intergenic not near genes chr2L 2618123 intergenic not near genes chr2L_6_2615001 chr2L_2615001 RAL-356 29 chr2L 2661218 2661222 chr2L 2663032 2663043 I-element 4 1821 2.5 0.5 1.5 1.6 1825 chr2L 2661218 intergenic not near genes chr2L 2662130 intergenic not near genes chr2L 2663043 intergenic not near genes chr2L_4_2660001 chr2L_2660001 RAL-356 30 chr2L 2661224 2661231 chr2L 2663030 2663066 I-element 4 1824 1.5 0.0 0.8 2.2 1842 chr2L 2661224 intergenic not near genes chr2L 2662145 intergenic not near genes chr2L 2663066 intergenic not near genes chr2L_4_2660001 chr2L_2660001 RAL-356 31 chr2L 2667623 2667658 chr2L 2667702 2667716 9 70 6.0 3.0 4.5 1.6 93 chr2L 2667623 intergenic not near genes chr2L 2667670 intergenic not near genes chr2L 2667716 intergenic not near genes chr2L_9_2665001 chr2L_2665001 RAL-356 32 chr2L 2702999 2703006 chr2L 2703185 2703205 5 196 3.5 3.5 3.5 1.1 206 chr2L 2702999 intron CG31690 + chr2L 2703102 intron CG31690 + chr2L 2703205 intron CG31690 + chr2L_5_2700001 chr2L_2700001 RAL-356 33 chr2L 2933314 2933324 chr2L 2935478 2935481 pogo 8 2170 2.5 4.5 3.5 1.8 2167 chr2L 2933314 intron lilli + chr2L 2934398 intron lilli + chr2L 2935481 intron lilli + chr2L_8_2930001 chr2L_2930001 RAL-356 34 chr2L 3073037 3073061 chr2L 3078240 3078261 copia 8 5198 2.0 3.0 2.5 2.3 5224 chr2L 3073037 intron toc - chr2L 3075649 intron toc - chr2L 3078261 intron toc - chr2L_8_3075001 chr2L_3075001 RAL-356 35 chr2L 3079998 3080014 chr2L 3080077 3080097 6 80 3.0 4.5 3.8 1.2 99 chr2L 3079998 intron toc - chr2L 3080048 intron toc - chr2L 3080097 intron toc - chr2L_6_3080001 chr2L_3080001 RAL-356 36 chr2L 3147275 3147281 chr2L 3147352 3147358 4 77 7.5 2.0 4.8 0.7 83 chr2L 3147275 3` UTR Mad - chr2L 3147316 3` UTR Mad - chr2L 3147358 3` UTR Mad - chr2L_4_3145001 chr2L_3145001 RAL-356 37 chr2L 3147291 3147306 chr2L 3147350 3147382 9 64 4.0 2.0 3.0 2.2 91 chr2L 3147291 3` UTR Mad - chr2L 3147336 3` UTR Mad - chr2L 3147382 3` UTR Mad - chr2L_9_3145001 chr2L_3145001 RAL-356 38 chr2L 3729171 3729197 chr2L 3729267 3729278 5 93 0.5 1.5 1.0 2.5 107 chr2L 3729171 intergenic Shaw + chr2L 3729224 intergenic Shaw + chr2L 3729278 intergenic Shaw + chr2L_5_3725001 chr2L_3725001 RAL-356 39 chr2L 3857149 3857165 chr2L 3857216 3857228 6 70 5.5 5.0 5.2 1.0 79 chr2L 3857149 3` UTR CR45450 - chr2L 3857188 intergenic CR45450 - chr2L 3857228 intergenic CR45450 - chr2L_6_3855001 chr2L_3855001 RAL-356 40 chr2L 3908399 3908426 chr2L 3908651 3908668 6 250 0.0 4.0 2.0 2.0 269 chr2L 3908399 intron fred - chr2L 3908534 intron fred - chr2L 3908668 intron fred - chr2L_6_3905001 chr2L_3905001 RAL-356 41 chr2L 4014674 4014685 chr2L 4014796 4014825 5 130 3.0 5.0 4.0 1.0 151 chr2L 4014674 intergenic not near genes chr2L 4014750 intergenic not near genes chr2L 4014825 intergenic not near genes chr2L_5_4010001 chr2L_4010001 RAL-356 42 chr2L 4066046 4066060 chr2L 4068862 4068875 Juan 5 2819 2.5 4.5 3.5 1.1 2829 chr2L 4066046 intron ed + chr2L 4067460 intron ed + chr2L 4068875 intron ed + chr2L_5_4065001 chr2L_4065001 RAL-356 43 chr2L 4082903 4082915 chr2L 4082988 4083019 6 93 4.0 3.5 3.8 1.2 116 chr2L 4082903 intron ed + chr2L 4082961 intron ed + chr2L 4083019 intron ed + chr2L_6_4080001 chr2L_4080001 RAL-356 44 chr2L 4150624 4150647 chr2L 4150702 4150723 6 78 0.5 1.0 0.8 3.3 99 chr2L 4150624 exon CG2955 + chr2L 4150674 exon CG2955 + chr2L 4150723 exon CG2955 + chr2L_6_4150001 chr2L_4150001 RAL-356 45 chr2L 4181295 4181304 chr2L 4183913 4183920 Burdock 5 2624 4.0 4.5 4.2 1.0 2625 chr2L 4181295 intergenic not near genes chr2L 4182608 intergenic not near genes chr2L 4183920 intergenic not near genes chr2L_5_4180001 chr2L_4180001 RAL-356 46 chr2L 4300285 4300292 chr2L 4300337 4300342 4 55 6.5 0.0 3.2 1.0 57 chr2L 4300285 intron tutl + chr2L 4300314 intron tutl + chr2L 4300342 intron tutl + chr2L_4_4300001 chr2L_4300001 RAL-356 47 chr2L 4601713 4601736 chr2L 4609145 4609157 mdg1 5 7430 3.0 3.5 3.2 1.2 7444 chr2L 4601713 intron dp - chr2L 4605435 intron dp - chr2L 4609157 intron dp - chr2L_5_4605001 chr2L_4605001 RAL-356 48 chr2L 4621817 4621823 chr2L 4621873 4621903 5 70 0.0 3.0 1.5 2.0 86 chr2L 4621817 intergenic not near genes chr2L 4621860 intergenic not near genes chr2L 4621903 intergenic not near genes chr2L_5_4620001 chr2L_4620001 RAL-356 49 chr2L 4771147 4771164 chr2L 4771234 4771251 4 86 2.0 2.5 2.2 1.2 104 chr2L 4771147 intron CG15630 - chr2L 4771199 intron CG15630 - chr2L 4771251 intron CG15630 - chr2L_4_4770001 chr2L_4770001 RAL-356 50 chr2L 4855800 4855832 chr2L 4856008 4856024 7 205 1.5 3.0 2.2 2.2 224 chr2L 4855800 intron pog + chr2L 4855912 intron pog + chr2L 4856024 intron pog + chr2L_7_4855001 chr2L_4855001 RAL-356 51 chr2L 4878560 4878578 chr2L 4878625 4878643 7 66 0.5 5.0 2.8 1.8 83 chr2L 4878560 3` UTR Cf2 - chr2L 4878602 3` UTR Cf2 - chr2L 4878643 3` UTR Cf2 - chr2L_7_4875001 chr2L_4875001 RAL-356 52 chr2L 4953532 4953541 chr2L 4953773 4953777 pogo 4 238 1.5 0.0 0.8 2.2 245 chr2L 4953532 intergenic Jon25Bii - chr2L 4953654 intergenic not near genes chr2L 4953777 intergenic not near genes chr2L_4_4950001 chr2L_4950001 RAL-356 53 chr2L 5040700 5040718 chr2L 5040783 5040805 4 88 1.0 5.0 3.0 1.0 105 chr2L 5040700 3` UTR,3` UTR,3` UTR CG14042 +,SP555 +,CG31650 - chr2L 5040752 3` UTR,3` UTR,3` UTR CG14042 +,SP555 +,CG31650 - chr2L 5040805 3` UTR,3` UTR,3` UTR CG14042 +,SP555 +,CG31650 - chr2L_4_5040001 chr2L_5040001 RAL-356 54 chr2L 5147735 5147757 chr2L 5147958 5147989 10 225 1.0 2.0 1.5 4.0 254 chr2L 5147735 intron Msp300 + chr2L 5147862 intron Msp300 + chr2L 5147989 intron Msp300 + chr2L_10_5145001 chr2L_5145001 RAL-356 55 chr2L 5242936 5242937 chr2L 16217660 16217660 6 10974724 21.0 23.0 22.0 0.3 10974724 chr2L 5242936 intron tkv - chr2L 10730298 3` UTR,5` UTR CG6443 +,CG17118 + chr2L 16217660 intergenic not near genes chr2L_6_10730001 chr2L_10730001 RAL-356 56 chr2L 5248798 5248824 chr2L 5248932 5248944 8 130 2.5 1.5 2.0 2.7 146 chr2L 5248798 intron tkv - chr2L 5248871 intron tkv - chr2L 5248944 intron tkv - chr2L_8_5245001 chr2L_5245001 RAL-356 57 chr2L 5732792 5732815 chr2L 5732877 5732894 4 84 0.0 1.5 0.8 2.2 102 chr2L 5732792 intron CG11030 + chr2L 5732843 intron CG11030 + chr2L 5732894 intron CG11030 + chr2L_4_5730001 chr2L_5730001 RAL-356 58 chr2L 5816183 5816200 chr2L 5816259 5816276 6 73 4.0 1.5 2.8 1.6 93 chr2L 5816183 intergenic not near genes chr2L 5816230 intergenic not near genes chr2L 5816276 intergenic not near genes chr2L_6_5815001 chr2L_5815001 RAL-356 59 chr2L 5816205 5816219 chr2L 5816256 5816285 8 69 2.5 1.0 1.8 2.9 80 chr2L 5816205 intergenic not near genes chr2L 5816245 intergenic not near genes chr2L 5816285 intergenic not near genes chr2L_8_5815001 chr2L_5815001 RAL-356 60 chr2L 5827713 5827739 chr2L 5836713 5836728 roo 9 8997 5.0 4.5 4.8 1.6 9015 chr2L 5827713 intron TrissinR + chr2L 5832220 intron TrissinR + chr2L 5836728 intron TrissinR + chr2L_9_5830001 chr2L_5830001 RAL-356 61 chr2L 5839170 5839184 chr2L 5839250 5839259 7 84 6.5 3.5 5.0 1.2 89 chr2L 5839170 intron TrissinR + chr2L 5839214 intron TrissinR + chr2L 5839259 intron TrissinR + chr2L_7_5835001 chr2L_5835001 RAL-356 62 chr2L 5839187 5839197 chr2L 5839249 5839264 6 72 3.0 3.5 3.2 1.4 77 chr2L 5839187 intron TrissinR + chr2L 5839226 intron TrissinR + chr2L 5839264 intron TrissinR + chr2L_6_5835001 chr2L_5835001 RAL-356 63 chr2L 5924233 5924262 chr2L 5924310 5924316 5 69 1.5 5.0 3.2 1.2 83 chr2L 5924233 intergenic not near genes chr2L 5924274 intergenic not near genes chr2L 5924316 intergenic not near genes chr2L_5_5920001 chr2L_5920001 RAL-356 64 chr2L 6050441 6050468 chr2L 6050545 6050566 10 101 1.0 2.0 1.5 4.0 125 chr2L 6050441 intergenic CG12393 +,CG9135 + chr2L 6050504 intergenic CG12393 +,CG9135 + chr2L 6050566 intergenic CG12393 +,CG9135 + chr2L_10_6050001 chr2L_6050001 RAL-356 65 chr2L 6160869 6160873 chr2L 6160931 6160960 5 78 3.0 4.5 3.8 1.0 91 chr2L 6160869 exon CG13989 + chr2L 6160914 exon CG13989 + chr2L 6160960 3` UTR CG13989 + chr2L_5_6160001 chr2L_6160001 RAL-356 66 chr2L 6426869 6426889 chr2L 6445113 6445131 roo 6 18245 1.5 2.5 2.0 2.0 18262 chr2L 6426869 3` UTR CG9527 - chr2L 6436000 intron CG9527 - chr2L 6445131 exon CG9527 - chr2L_6_6435001 chr2L_6435001 RAL-356 67 chr2L 6463555 6463577 chr2L 6463647 6463652 4 85 6.5 6.5 6.5 0.5 97 chr2L 6463555 exon CG16947 - chr2L 6463604 exon CG16947 - chr2L 6463652 exon CG16947 - chr2L_4_6460001 chr2L_6460001 RAL-356 68 chr2L 6564855 6564880 chr2L 6564948 6564972 4 93 0.0 1.5 0.8 2.2 117 chr2L 6564855 3` UTR CG13766 - chr2L 6564914 3` UTR CG13766 - chr2L 6564972 3` UTR CG13766 - chr2L_4_6560001 chr2L_6560001 RAL-356 69 chr2L 6626885 6626918 chr2L 6626970 6626998 9 79 3.0 2.5 2.8 2.4 113 chr2L 6626885 intron Oatp26F - chr2L 6626942 intron Oatp26F - chr2L 6626998 intron Oatp26F - chr2L_9_6625001 chr2L_6625001 RAL-356 70 chr2L 6655530 6655546 chr2L 6655888 6655888 5 356 3.0 3.5 3.2 1.2 358 chr2L 6655530 exon CG31633 - chr2L 6655709 exon CG31633 - chr2L 6655888 exon CG31633 - chr2L_5_6655001 chr2L_6655001 RAL-356 71 chr2L 6728742 6728762 chr2L 6728821 6728831 5 75 1.0 5.5 3.2 1.2 89 chr2L 6728742 exon Liprin-alpha + chr2L 6728786 intron Liprin-alpha + chr2L 6728831 intron Liprin-alpha + chr2L_5_6725001 chr2L_6725001 RAL-356 72 chr2L 6772000 6772018 chr2L 6772071 6772090 7 78 9.0 4.5 6.8 0.9 90 chr2L 6772000 intron CG11321 - chr2L 6772045 intron CG11321 - chr2L 6772090 intron CG11321 - chr2L_7_6770001 chr2L_6770001 RAL-356 73 chr2L 6876779 6876806 chr2L 6882969 6882980 diver 4 6181 8.5 3.5 6.0 0.6 6201 chr2L 6876779 intron Nlg2 + chr2L 6879880 intron Nlg2 + chr2L 6882980 intron Nlg2 + chr2L_4_6875001 chr2L_6875001 RAL-356 74 chr2L 7343327 7343358 chr2L 7350440 7350474 roo 11 7106 5.0 2.5 3.8 2.3 7147 chr2L 7343327 intron Wnt6 + chr2L 7346900 intron Wnt6 + chr2L 7350474 intron Wnt6 + chr2L_11_7345001 chr2L_7345001 RAL-356 75 chr2L 7405779 7405809 chr2L 7405857 7405870 10 75 1.5 4.0 2.8 2.6 91 chr2L 7405779 intron CG5177 + chr2L 7405824 intron CG5177 + chr2L 7405870 intron CG5177 + chr2L_10_7405001 chr2L_7405001 RAL-356 76 chr2L 7493680 7493700 chr2L 7493880 7493886 6 202 2.5 1.5 2.0 2.0 206 chr2L 7493680 intron Ziz - chr2L 7493783 intron Ziz - chr2L 7493886 intron Ziz - chr2L_6_7490001 chr2L_7490001 RAL-356 77 chr2L 7865366 7865380 chr2L 7865754 7865779 5 394 2.0 3.5 2.8 1.3 413 chr2L 7865366 3` UTR Proc - chr2L 7865572 3` UTR Proc - chr2L 7865779 3` UTR Proc - chr2L_5_7865001 chr2L_7865001 RAL-356 78 chr2L 7959048 7959073 chr2L 7960457 7960484 pogo 8 1404 2.5 3.5 3.0 2.0 1436 chr2L 7959048 intron Snoo - chr2L 7959766 intron Snoo - chr2L 7960484 intron Snoo - chr2L_8_7955001 chr2L_7955001 RAL-356 79 chr2L 8013618 8013644 chr2L 8018823 8018826 copia 7 5200 3.5 0.0 1.8 2.5 5208 chr2L 8013618 intron Tg + chr2L 8016222 intron Tg + chr2L 8018826 intron Tg + chr2L_7_8015001 chr2L_8015001 RAL-356 80 chr2L 8167147 8167178 chr2L 8167236 8167269 6 85 1.0 4.5 2.8 1.6 122 chr2L 8167147 intron Piezo + chr2L 8167208 intron Piezo + chr2L 8167269 intron Piezo + chr2L_6_8165001 chr2L_8165001 RAL-356 81 chr2L 8184928 8184954 chr2L 8185010 8185036 4 84 0.5 1.5 1.0 2.0 108 chr2L 8184928 intron Piezo + chr2L 8184982 intron Piezo + chr2L 8185036 intron Piezo + chr2L_4_8180001 chr2L_8180001 RAL-356 82 chr2L 8291255 8291269 chr2L 8291345 8291359 4 89 5.5 3.5 4.5 0.7 104 chr2L 8291255 intron Btk29A - chr2L 8291307 intron Btk29A - chr2L 8291359 intron Btk29A - chr2L_4_8290001 chr2L_8290001 RAL-356 83 chr2L 8580202 8580222 chr2L 8580273 8580281 6 74 1.0 2.5 1.8 2.1 79 chr2L 8580202 intron Sema-1a + chr2L 8580242 intron Sema-1a + chr2L 8580281 intron Sema-1a + chr2L_6_8580001 chr2L_8580001 RAL-356 84 chr2L 8723129 8723148 chr2L 8731491 8731504 Tirant 4 8364 2.5 2.0 2.2 1.2 8375 chr2L 8723129 intron raw - chr2L 8727316 intron raw - chr2L 8731504 intron raw - chr2L_4_8725001 chr2L_8725001 RAL-356 85 chr2L 8800858 8800876 chr2L 8800933 8800943 4 73 3.5 0.5 2.0 1.3 85 chr2L 8800858 intergenic not near genes chr2L 8800900 intergenic not near genes chr2L 8800943 intergenic not near genes chr2L_4_8800001 chr2L_8800001 RAL-356 86 chr2L 8892033 8892051 chr2L 8892112 8892130 4 79 1.0 3.0 2.0 1.3 97 chr2L 8892033 3` UTR CG42713 + chr2L 8892082 3` UTR CG42713 + chr2L 8892130 3` UTR CG42713 + chr2L_4_8890001 chr2L_8890001 RAL-356 87 chr2L 8900390 8900413 chr2L 8900465 8900470 4 72 2.0 3.0 2.5 1.1 80 chr2L 8900390 intron CG34398 + chr2L 8900430 intron CG34398 + chr2L 8900470 intron CG34398 + chr2L_4_8900001 chr2L_8900001 RAL-356 88 chr2L 8963997 8964004 chr2L 8966365 8966391 4 2383 10.5 11.0 10.8 0.3 2394 chr2L 8963997 exon CG32985 + chr2L 8965194 exon CG32984 + chr2L 8966391 exon CG32984 + chr2L_4_8965001 chr2L_8965001 RAL-356 89 chr2L 9000299 9000311 chr2L 9007791 9007799 roo 6 7496 2.0 0.0 1.0 3.0 7500 chr2L 9000299 intergenic Try29F + chr2L 9004049 intergenic not near genes chr2L 9007799 intergenic not near genes chr2L_6_9000001 chr2L_9000001 RAL-356 90 chr2L 9025820 9025830 chr2L 9025904 9025914 5 83 13.0 2.5 7.8 0.6 94 chr2L 9025820 intron,3` UTR CG9582 -,CR44352 - chr2L 9025867 intron,3` UTR CG9582 -,CR44352 - chr2L 9025914 intron,3` UTR CG9582 -,CR44352 - chr2L_5_9025001 chr2L_9025001 RAL-356 91 chr2L 9025833 9025854 chr2L 9025903 9025929 9 75 5.5 2.5 4.0 1.8 96 chr2L 9025833 intron,3` UTR CG9582 -,CR44352 - chr2L 9025881 intron,3` UTR CG9582 -,CR44352 - chr2L 9025929 intron,3` UTR CG9582 -,CR44352 - chr2L_9_9025001 chr2L_9025001 RAL-356 92 chr2L 9084336 9084340 chr2L 16217660 16217660 12 7133322 15.0 23.0 19.0 0.6 7133324 chr2L 9084336 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_12_12650001 chr2L_12650001 RAL-356 93 chr2L 9116608 9116633 chr2L 9116713 9116742 9 103 2.0 0.5 1.2 4.1 134 chr2L 9116608 intergenic not near genes chr2L 9116675 intergenic not near genes chr2L 9116742 intergenic not near genes chr2L_9_9115001 chr2L_9115001 RAL-356 94 chr2L 9285045 9285047 chr2L 9285101 9285103 4 58 1.5 2.0 1.8 1.4 58 chr2L 9285045 intron Ggamma30A + chr2L 9285074 intron Ggamma30A + chr2L 9285103 intron Ggamma30A + chr2L_4_9285001 chr2L_9285001 RAL-356 95 chr2L 9287344 9287356 chr2L 9287420 9287438 13 86 2.0 3.0 2.5 3.7 94 chr2L 9287344 intron Ggamma30A + chr2L 9287391 intron Ggamma30A + chr2L 9287438 intron Ggamma30A + chr2L_13_9285001 chr2L_9285001 RAL-356 96 chr2L 9303409 9303493 chr2L 9303469 9303550 6 71 0.0 0.0 0.0 6.0 141 chr2L 9303409 intergenic not near genes chr2L 9303480 intergenic not near genes chr2L 9303550 intergenic not near genes chr2L_6_9300001 chr2L_9300001 RAL-356 97 chr2L 9393498 9393528 chr2L 9396463 9396507 jockey 4 2968 1.5 0.0 0.8 2.2 3009 chr2L 9393498 intron Shawl - chr2L 9395002 intron Shawl - chr2L 9396507 intron Shawl - chr2L_4_9390001 chr2L_9390001 RAL-356 98 chr2L 9490539 9490546 chr2L 9490603 9490610 5 74 3.5 4.0 3.8 1.0 71 chr2L 9490539 intergenic not near genes chr2L 9490574 intergenic not near genes chr2L 9490610 intergenic not near genes chr2L_5_9490001 chr2L_9490001 RAL-356 99 chr2L 9490547 9490552 chr2L 9490602 9490625 5 64 2.5 3.5 3.0 1.2 78 chr2L 9490547 intergenic not near genes chr2L 9490586 intergenic not near genes chr2L 9490625 intergenic not near genes chr2L_5_9490001 chr2L_9490001 RAL-356 100 chr2L 9819736 9819761 chr2L 9819820 9819844 8 79 2.5 2.5 2.5 2.3 108 chr2L 9819736 intron nAChRalpha6 - chr2L 9819790 intron nAChRalpha6 - chr2L 9819844 intron nAChRalpha6 - chr2L_8_9815001 chr2L_9815001 RAL-356 101 chr2L 9829575 9829598 chr2L 9829777 9829800 9 199 2.0 3.0 2.5 2.6 225 chr2L 9829575 intron nAChRalpha6 - chr2L 9829688 intron nAChRalpha6 - chr2L 9829800 intron nAChRalpha6 - chr2L_9_9825001 chr2L_9825001 RAL-356 102 chr2L 9892503 9892534 chr2L 9892579 9892610 8 71 3.0 2.0 2.5 2.3 107 chr2L 9892503 intron mtDNA-helicase - chr2L 9892556 intron mtDNA-helicase - chr2L 9892610 intron mtDNA-helicase - chr2L_8_9890001 chr2L_9890001 RAL-356 103 chr2L 9973746 9973759 chr2L 9980843 9980864 HMS-Beagle 8 7107 8.0 7.0 7.5 0.9 7118 chr2L 9973746 intergenic not near genes chr2L 9977305 intergenic not near genes chr2L 9980864 intergenic not near genes chr2L_8_9975001 chr2L_9975001 RAL-356 104 chr2L 9986351 9986384 chr2L 9986446 9986470 9 86 5.0 5.5 5.2 1.5 119 chr2L 9986351 intron bib + chr2L 9986410 intron bib + chr2L 9986470 intron bib + chr2L_9_9985001 chr2L_9985001 RAL-356 105 chr2L 10051731 10051753 chr2L 10051813 10051838 11 76 6.0 5.5 5.8 1.6 107 chr2L 10051731 5` UTR CR44874 + chr2L 10051784 5` UTR CR44874 + chr2L 10051838 5` UTR CR44874 + chr2L_11_10050001 chr2L_10050001 RAL-356 106 chr2L 10078126 10078159 chr2L 10078284 10078310 12 155 4.0 2.5 3.2 2.9 184 chr2L 10078126 intron CG44153 - chr2L 10078218 intron CG44153 - chr2L 10078310 intron CG44153 - chr2L_12_10075001 chr2L_10075001 RAL-356 107 chr2L 10156343 10156355 chr2L 10163790 10163811 blood 7 7457 1.5 3.5 2.5 2.0 7468 chr2L 10156343 intron,3` UTR CG44153 -,CG4839 + chr2L 10160077 intron CG44153 - chr2L 10163811 intron CG44153 - chr2L_7_10160001 chr2L_10160001 RAL-356 108 chr2L 10555294 10555307 chr2L 10555354 10555382 5 65 1.5 0.0 0.8 2.8 88 chr2L 10555294 intron Trim9 + chr2L 10555338 intron Trim9 + chr2L 10555382 intron Trim9 + chr2L_5_10555001 chr2L_10555001 RAL-356 109 chr2L 10795427 10795460 chr2L 10795557 10795564 13 124 2.0 3.5 2.8 3.4 137 chr2L 10795427 intron CG31869 - chr2L 10795496 intron CG31869 - chr2L 10795564 intron CG31869 - chr2L_13_10795001 chr2L_10795001 RAL-356 110 chr2L 10862862 10862876 chr2L 10864455 10864466 Rt1c 8 1595 3.5 5.5 4.5 1.5 1604 chr2L 10862862 3` UTR CR43807 - chr2L 10863664 intron CR43807 - chr2L 10864466 3` UTR CR43807 - chr2L_8_10860001 chr2L_10860001 RAL-356 111 chr2L 10873048 10873080 chr2L 10873128 10873139 11 69 2.0 3.5 2.8 2.9 91 chr2L 10873048 intergenic not near genes chr2L 10873094 intergenic not near genes chr2L 10873139 intergenic not near genes chr2L_11_10870001 chr2L_10870001 RAL-356 112 chr2L 10914822 10914830 chr2L 10914896 10914917 4 78 5.5 2.5 4.0 0.8 95 chr2L 10914822 intergenic not near genes chr2L 10914870 intergenic not near genes chr2L 10914917 intergenic not near genes chr2L_4_10910001 chr2L_10910001 RAL-356 113 chr2L 10946956 10946972 chr2L 10956165 10956175 roo 10 9208 3.5 8.0 5.8 1.5 9219 chr2L 10946956 intron dpr2 - chr2L 10951566 intron dpr2 - chr2L 10956175 intron dpr2 - chr2L_10_10950001 chr2L_10950001 RAL-356 114 chr2L 11364496 11364511 chr2L 11364558 11364587 7 71 0.5 5.5 3.0 1.8 91 chr2L 11364496 intron salr + chr2L 11364542 intron salr + chr2L 11364587 intron salr + chr2L_7_11360001 chr2L_11360001 RAL-356 115 chr2L 11404785 11404800 chr2L 11404861 11404873 4 75 2.0 1.5 1.8 1.4 88 chr2L 11404785 intergenic not near genes chr2L 11404829 intergenic not near genes chr2L 11404873 intergenic not near genes chr2L_4_11400001 chr2L_11400001 RAL-356 116 chr2L 11404801 11404812 chr2L 11404858 11404865 8 69 1.0 1.5 1.2 3.6 64 chr2L 11404801 intergenic not near genes chr2L 11404833 intergenic not near genes chr2L 11404865 intergenic not near genes chr2L_8_11400001 chr2L_11400001 RAL-356 117 chr2L 11418674 11418686 chr2L 11418734 11418741 5 61 2.5 4.0 3.2 1.2 67 chr2L 11418674 intergenic not near genes chr2L 11418708 intergenic not near genes chr2L 11418741 intergenic not near genes chr2L_5_11415001 chr2L_11415001 RAL-356 118 chr2L 11436267 11436302 chr2L 11436350 11436385 8 78 2.0 2.0 2.0 2.7 118 chr2L 11436267 exon salm - chr2L 11436326 intron salm - chr2L 11436385 intron salm - chr2L_8_11435001 chr2L_11435001 RAL-356 119 chr2L 11476983 11477005 chr2L 11477060 11477069 7 73 0.5 1.5 1.0 3.5 86 chr2L 11476983 intergenic not near genes chr2L 11477026 intergenic not near genes chr2L 11477069 intergenic not near genes chr2L_7_11475001 chr2L_11475001 RAL-356 120 chr2L 11614078 11614086 chr2L 11615550 11615572 hopper2 4 1482 2.5 4.5 3.5 0.9 1494 chr2L 11614078 intron kek2 + chr2L 11614825 intron kek2 + chr2L 11615572 intron kek2 + chr2L_4_11610001 chr2L_11610001 RAL-356 121 chr2L 11770602 11770631 chr2L 11770684 11770699 9 75 3.5 1.0 2.2 2.8 97 chr2L 11770602 intergenic not near genes chr2L 11770650 intergenic not near genes chr2L 11770699 intergenic not near genes chr2L_9_11770001 chr2L_11770001 RAL-356 122 chr2L 11910971 11910985 chr2L 11911033 11911049 6 68 3.0 0.0 1.5 2.4 78 chr2L 11910971 intron Pde1c - chr2L 11911010 intron Pde1c - chr2L 11911049 intron Pde1c - chr2L_6_11910001 chr2L_11910001 RAL-356 123 chr2L 12224891 12224898 chr2L 12224947 12224973 4 71 1.0 1.5 1.2 1.8 82 chr2L 12224891 intron aret + chr2L 12224932 intron aret + chr2L 12224973 intron aret + chr2L_4_12220001 chr2L_12220001 RAL-356 124 chr2L 12305409 12305438 chr2L 12305497 12305525 8 79 2.0 4.5 3.2 1.9 116 chr2L 12305409 intron aret + chr2L 12305467 intron aret + chr2L 12305525 intron aret + chr2L_8_12305001 chr2L_12305001 RAL-356 125 chr2L 7904536 7904550 chr2L 12617880 12617886 4 4713339 8.0 13.0 10.5 0.3 4713350 chr2L 7904536 intron Snoo - chr2L 10261211 intergenic Pten - chr2L 12617886 intron,intron nub +,Ref2 - chr2L_4_10260001 chr2L_10260001 RAL-356 126 chr2L 12731069 12731093 chr2L 12735827 12735841 F-element 6 4760 3.0 1.5 2.2 1.9 4772 chr2L 12731069 intron MRP + chr2L 12733455 intron MRP + chr2L 12735841 intron MRP + chr2L_6_12730001 chr2L_12730001 RAL-356 127 chr2L 12736674 12736704 chr2L 12736750 12736762 7 71 4.0 3.0 3.5 1.6 88 chr2L 12736674 intron MRP + chr2L 12736718 intron MRP + chr2L 12736762 intron MRP + chr2L_7_12735001 chr2L_12735001 RAL-356 128 chr2L 12739189 12739196 chr2L 12743952 12743977 Doc 6 4774 3.5 5.0 4.2 1.2 4788 chr2L 12739189 intron MRP + chr2L 12741583 intron MRP + chr2L 12743977 intron MRP + chr2L_6_12740001 chr2L_12740001 RAL-356 129 chr2L 12751315 12751341 chr2L 12751392 12751419 12 79 2.0 5.5 3.8 2.5 104 chr2L 12751315 intergenic not near genes chr2L 12751367 intergenic not near genes chr2L 12751419 intergenic not near genes chr2L_12_12750001 chr2L_12750001 RAL-356 130 chr2L 12791620 12791640 chr2L 12795278 12795291 F-element 4 3665 2.0 2.0 2.0 1.3 3671 chr2L 12791620 intergenic not near genes chr2L 12793456 intergenic not near genes chr2L 12795291 intergenic not near genes chr2L_4_12790001 chr2L_12790001 RAL-356 131 chr2L 12861703 12861731 chr2L 12863159 12863198 hobo 15 1457 3.5 3.0 3.2 3.6 1495 chr2L 12861703 intergenic not near genes chr2L 12862450 intergenic not near genes chr2L 12863198 intergenic not near genes chr2L_15_12860001 chr2L_12860001 RAL-356 132 chr2L 12933857 12933881 chr2L 12941323 12941348 blood 7 7465 5.5 6.0 5.8 1.0 7491 chr2L 12933857 intergenic not near genes chr2L 12937602 intergenic not near genes chr2L 12941348 intergenic not near genes chr2L_7_12935001 chr2L_12935001 RAL-356 133 chr2L 13398721 13398749 chr2L 13398798 13398829 4 74 1.0 0.0 0.5 2.7 108 chr2L 13398721 intergenic CG10859 -,CR44600 -,CG7110 + chr2L 13398775 intergenic CR44600 -,CG10859 -,CG7110 + chr2L 13398829 intergenic CR44600 -,CG7110 +,CG10859 - chr2L_4_13395001 chr2L_13395001 RAL-356 134 chr2L 13405648 13405682 chr2L 13410445 13410479 Doc 8 4792 3.5 2.5 3.0 2.0 4831 chr2L 13405648 exon CG7110 + chr2L 13408064 intron CG7110 + chr2L 13410479 intron CG7110 + chr2L_8_13405001 chr2L_13405001 RAL-356 135 chr2L 13418191 13418214 chr2L 13418510 13418525 9 316 5.5 0.0 2.8 2.4 334 chr2L 13418191 intron,intron CG42784 +,CG43850 + chr2L 13418358 intron,intron CG42784 +,CG43850 + chr2L 13418525 intron,intron CG42784 +,CG43850 + chr2L_9_13415001 chr2L_13415001 RAL-356 136 chr2L 13481460 13481471 chr2L 13482067 13482068 jockey 4 604 5.0 5.5 5.2 0.6 608 chr2L 13481460 intron CG42784 + chr2L 13481764 intron CG42784 + chr2L 13482068 intron CG42784 + chr2L_4_13480001 chr2L_13480001 RAL-356 137 chr2L 13574675 13574707 chr2L 13574753 13574772 11 72 3.5 1.0 2.2 3.4 97 chr2L 13574675 intron kuz + chr2L 13574724 intron kuz + chr2L 13574772 intron kuz + chr2L_11_13570001 chr2L_13570001 RAL-356 138 chr2L 13620114 13620140 chr2L 13620340 13620348 6 222 2.0 0.5 1.2 2.7 234 chr2L 13620114 intron kuz + chr2L 13620231 intron kuz + chr2L 13620348 intron kuz + chr2L_6_13620001 chr2L_13620001 RAL-356 139 chr2L 13622137 13622170 chr2L 13622236 13622247 10 83 3.5 1.5 2.5 2.9 110 chr2L 13622137 intron kuz + chr2L 13622192 intron kuz + chr2L 13622247 intron kuz + chr2L_10_13620001 chr2L_13620001 RAL-356 140 chr2L 13703951 13703982 chr2L 13704035 13704064 10 82 4.0 3.0 3.5 2.2 113 chr2L 13703951 intron CG31814 - chr2L 13704008 intron CG31814 - chr2L 13704064 intron CG31814 - chr2L_10_13700001 chr2L_13700001 RAL-356 141 chr2L 13754194 13754219 chr2L 13754272 13754299 4 79 0.0 2.0 1.0 2.0 105 chr2L 13754194 intron,intron CR44846 +,TM9SF4 + chr2L 13754246 intron,intron CR44846 +,TM9SF4 + chr2L 13754299 intron,intron CR44846 +,TM9SF4 + chr2L_4_13750001 chr2L_13750001 RAL-356 142 chr2L 13853091 13853115 chr2L 13862233 13862248 roo 4 9142 2.5 1.0 1.8 1.4 9157 chr2L 13853091 intron CenG1A + chr2L 13857670 intron CenG1A + chr2L 13862248 intron CenG1A + chr2L_4_13855001 chr2L_13855001 RAL-356 143 chr2L 13889574 13889590 chr2L 13889642 13889651 5 72 8.0 11.5 9.8 0.5 77 chr2L 13889574 intron CenG1A + chr2L 13889612 intron CenG1A + chr2L 13889651 intron CenG1A + chr2L_5_13885001 chr2L_13885001 RAL-356 144 chr2L 14564209 14564230 chr2L 14564269 14564274 6 53 8.5 7.0 7.8 0.7 65 chr2L 14564209 intergenic CG3473 - chr2L 14564242 intergenic not near genes chr2L 14564274 intergenic not near genes chr2L_6_14560001 chr2L_14560001 RAL-356 145 chr2L 14642591 14642604 chr2L 14651734 14651765 roo 7 9154 0.5 1.0 0.8 3.9 9174 chr2L 14642591 intron osp - chr2L 14647178 intron osp - chr2L 14651765 intron osp - chr2L_7_14645001 chr2L_14645001 RAL-356 146 chr2L 14657028 14657048 chr2L 14657107 14657127 5 79 10.0 9.0 9.5 0.5 99 chr2L 14657028 intron osp - chr2L 14657078 intron osp - chr2L 14657127 intron osp - chr2L_5_14655001 chr2L_14655001 RAL-356 147 chr2L 14778827 14778834 chr2L 14779098 14779115 4 279 4.0 5.5 4.8 0.7 288 chr2L 14778827 intergenic not near genes chr2L 14778971 intergenic not near genes chr2L 14779115 intergenic not near genes chr2L_4_14775001 chr2L_14775001 RAL-356 148 chr2L 14803888 14803905 chr2L 14809088 14809098 copia 6 5197 5.0 6.5 5.8 0.9 5210 chr2L 14803888 intergenic not near genes chr2L 14806493 intergenic not near genes chr2L 14809098 intergenic not near genes chr2L_6_14805001 chr2L_14805001 RAL-356 149 chr2L 14843508 14843530 chr2L 14843813 14843835 5 305 6.5 6.5 6.5 0.7 327 chr2L 14843508 intergenic CG42682 + chr2L 14843672 intergenic not near genes chr2L 14843835 intergenic not near genes chr2L_5_14840001 chr2L_14840001 RAL-356 150 chr2L 14889963 14889984 chr2L 14890378 14890394 jockey 9 414 1.0 2.5 1.8 3.2 431 chr2L 14889963 intergenic not near genes chr2L 14890178 intergenic not near genes chr2L 14890394 intergenic not near genes chr2L_9_14890001 chr2L_14890001 RAL-356 151 chr2L 15078093 15078102 chr2L 15078166 15078173 5 77 0.5 8.0 4.2 1.0 80 chr2L 15078093 intron CG15270 + chr2L 15078133 intron CG15270 + chr2L 15078173 intron CG15270 + chr2L_5_15075001 chr2L_15075001 RAL-356 152 chr2L 15213095 15213118 chr2L 15213280 15213290 6 184 13.0 11.5 12.2 0.5 195 chr2L 15213095 intergenic not near genes chr2L 15213192 intergenic not near genes chr2L 15213290 intergenic not near genes chr2L_6_15210001 chr2L_15210001 RAL-356 153 chr2L 15343546 15343566 chr2L 15343622 15343639 6 78 1.5 0.0 0.8 3.3 93 chr2L 15343546 intergenic not near genes chr2L 15343592 intergenic not near genes chr2L 15343639 intergenic not near genes chr2L_6_15340001 chr2L_15340001 RAL-356 154 chr2L 15586417 15586439 chr2L 15593469 15593479 297 5 7049 1.0 2.5 1.8 1.8 7062 chr2L 15586417 intergenic not near genes chr2L 15589948 intergenic not near genes chr2L 15593479 intergenic not near genes chr2L_5_15585001 chr2L_15585001 RAL-356 155 chr2L 15743321 15743339 chr2L 15743398 15743416 4 77 7.0 8.5 7.8 0.5 95 chr2L 15743321 intron CycE - chr2L 15743368 intron CycE - chr2L 15743416 intron CycE - chr2L_4_15740001 chr2L_15740001 RAL-356 156 chr2L 15947162 15947182 chr2L 15947244 15947261 6 78 5.5 10.0 7.8 0.7 99 chr2L 15947162 intron beat-Ib - chr2L 15947212 intron beat-Ib - chr2L 15947261 intron beat-Ib - chr2L_6_15945001 chr2L_15945001 RAL-356 157 chr2L 15956046 15956058 chr2L 15957490 15957525 hobo 8 1455 3.0 1.0 2.0 2.7 1479 chr2L 15956046 intron beat-Ib - chr2L 15956786 intron beat-Ib - chr2L 15957525 intron beat-Ib - chr2L_8_15955001 chr2L_15955001 RAL-356 158 chr2L 16035121 16035157 chr2L 16035374 16035395 7 245 7.0 7.5 7.2 0.9 274 chr2L 16035121 intron beat-Ic + chr2L 16035258 intron beat-Ic + chr2L 16035395 intron beat-Ic + chr2L_7_16035001 chr2L_16035001 RAL-356 159 chr2L 16058132 16058144 chr2L 16058270 16058272 4 136 5.5 4.0 4.8 0.7 140 chr2L 16058132 intron beat-Ia + chr2L 16058202 intron beat-Ia + chr2L 16058272 intron beat-Ia + chr2L_4_16055001 chr2L_16055001 RAL-356 160 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 5 145889 17.0 23.0 20.0 0.2 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_5_16140001 chr2L_16140001 RAL-356 161 chr2L 9084336 9084340 chr2L 16217660 16217660 18 7133322 15.0 23.0 19.0 0.9 7133324 chr2L 9084336 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_18_12650001 chr2L_12650001 RAL-356 162 chr2L 16226195 16226213 chr2L 16226278 16226286 4 81 3.5 6.0 4.8 0.7 91 chr2L 16226195 intergenic not near genes chr2L 16226240 intergenic not near genes chr2L 16226286 intergenic not near genes chr2L_4_16225001 chr2L_16225001 RAL-356 163 chr2L 16280266 16280278 chr2L 16281420 16281435 1360 7 1157 7.0 3.5 5.2 1.1 1169 chr2L 16280266 intron crp - chr2L 16280850 intron crp - chr2L 16281435 intron crp - chr2L_7_16280001 chr2L_16280001 RAL-356 164 chr2L 16550658 16550687 chr2L 16550726 16550743 4 66 5.5 6.5 6.0 0.6 85 chr2L 16550658 intron CG42389 + chr2L 16550700 intron CG42389 + chr2L 16550743 intron CG42389 + chr2L_4_16550001 chr2L_16550001 RAL-356 165 chr2L 16952135 16952156 chr2L 16952205 16952229 4 70 0.0 1.5 0.8 2.2 94 chr2L 16952135 intergenic not near genes chr2L 16952182 intergenic not near genes chr2L 16952229 intergenic not near genes chr2L_4_16950001 chr2L_16950001 RAL-356 166 chr2L 16958111 16958135 chr2L 16962889 16962923 Doc 4 4775 1.0 1.0 1.0 2.0 4812 chr2L 16958111 intergenic not near genes chr2L 16960517 intergenic not near genes chr2L 16962923 intergenic not near genes chr2L_4_16960001 chr2L_16960001 RAL-356 167 chr2L 17122780 17122788 chr2L 17122864 17122873 4 82 6.0 3.0 4.5 0.7 93 chr2L 17122780 intergenic not near genes chr2L 17122826 intergenic CG31784 - chr2L 17122873 intergenic CG31784 - chr2L_4_17120001 chr2L_17120001 RAL-356 168 chr2L 17122793 17122809 chr2L 17122862 17122874 5 76 2.5 2.0 2.2 1.6 81 chr2L 17122793 intergenic not near genes chr2L 17122834 intergenic CG31784 - chr2L 17122874 intergenic CG31784 - chr2L_5_17120001 chr2L_17120001 RAL-356 169 chr2L 17273208 17273214 chr2L 17277976 17277987 F-element 4 4772 3.5 2.5 3.0 1.0 4779 chr2L 17273208 intergenic not near genes chr2L 17275598 intergenic not near genes chr2L 17277987 intergenic not near genes chr2L_4_17275001 chr2L_17275001 RAL-356 170 chr2L 17319131 17319142 chr2L 17319188 17319203 4 62 6.0 9.0 7.5 0.5 72 chr2L 17319131 3` UTR CR45696 - chr2L 17319167 3` UTR CR45696 - chr2L 17319203 3` UTR CR45696 - chr2L_4_17315001 chr2L_17315001 RAL-356 171 chr2L 17327917 17327929 chr2L 17327999 17328015 7 84 5.0 5.0 5.0 1.2 98 chr2L 17327917 intergenic not near genes chr2L 17327966 intergenic not near genes chr2L 17328015 intergenic not near genes chr2L_7_17325001 chr2L_17325001 RAL-356 172 chr2L 17503303 17503326 chr2L 17503384 17503396 8 77 12.5 7.0 9.8 0.7 93 chr2L 17503303 intron Dhc36C + chr2L 17503350 intron Dhc36C + chr2L 17503396 intron Dhc36C + chr2L_8_17500001 chr2L_17500001 RAL-356 173 chr2L 17532913 17532948 chr2L 17533260 17533277 8 334 9.5 10.5 10.0 0.7 364 chr2L 17532913 intergenic not near genes chr2L 17533095 intergenic not near genes chr2L 17533277 intergenic not near genes chr2L_8_17530001 chr2L_17530001 RAL-356 174 chr2L 17880014 17880029 chr2L 17880084 17880093 6 74 1.5 1.0 1.2 2.7 79 chr2L 17880014 intergenic not near genes chr2L 17880054 intergenic not near genes chr2L 17880093 intergenic not near genes chr2L_6_17880001 chr2L_17880001 RAL-356 175 chr2L 17951951 17951977 chr2L 17953417 17953443 hobo 6 1463 1.0 2.5 1.8 2.1 1492 chr2L 17951951 intergenic CR44398 -,CR44397 - chr2L 17952697 intergenic not near genes chr2L 17953443 intergenic not near genes chr2L_6_17950001 chr2L_17950001 RAL-356 176 chr2L 18051877 18051904 chr2L 18061023 18061038 roo 5 9141 3.5 3.5 3.5 1.1 9161 chr2L 18051877 intron rdo + chr2L 18056458 intron rdo + chr2L 18061038 intron rdo + chr2L_5_18055001 chr2L_18055001 RAL-356 177 chr2L 18111243 18111271 chr2L 18111332 18111340 4 83 8.5 6.5 7.5 0.5 97 chr2L 18111243 intergenic not near genes chr2L 18111292 intergenic not near genes chr2L 18111340 intergenic not near genes chr2L_4_18110001 chr2L_18110001 RAL-356 178 chr2L 18154318 18154348 chr2L 18154405 18154418 6 83 13.0 11.0 12.0 0.5 100 chr2L 18154318 exon CG17681 + chr2L 18154368 exon CG17681 + chr2L 18154418 3` UTR CG17681 + chr2L_6_18150001 chr2L_18150001 RAL-356 179 chr2L 18408050 18408055 chr2L 18412815 18412824 Doc 4 4771 2.0 5.0 3.5 0.9 4774 chr2L 18408050 intergenic not near genes chr2L 18410437 intergenic not near genes chr2L 18412824 intergenic not near genes chr2L_4_18410001 chr2L_18410001 RAL-356 180 chr2L 18572185 18572195 chr2L 18572256 18572266 5 78 7.0 8.0 7.5 0.6 81 chr2L 18572185 intron Pde11 - chr2L 18572226 intron Pde11 - chr2L 18572266 intron Pde11 - chr2L_5_18570001 chr2L_18570001 RAL-356 181 chr2L 18621058 18621070 chr2L 18621145 18621158 4 88 2.5 3.5 3.0 1.0 100 chr2L 18621058 intron MESR3 + chr2L 18621108 intron MESR3 + chr2L 18621158 intron MESR3 + chr2L_4_18620001 chr2L_18620001 RAL-356 182 chr2L 18664577 18664599 chr2L 18664653 18664672 4 70 9.5 8.0 8.8 0.4 95 chr2L 18664577 intergenic not near genes chr2L 18664624 intergenic not near genes chr2L 18664672 intergenic not near genes chr2L_4_18660001 chr2L_18660001 RAL-356 183 chr2L 18812559 18812586 chr2L 18812822 18812836 4 256 3.5 13.0 8.2 0.4 277 chr2L 18812559 intergenic CG17325 +,CG42305 + chr2L 18812698 5` UTR,5` UTR CG17325 +,CG42305 + chr2L 18812836 5` UTR,5` UTR CG17325 +,CG42305 + chr2L_4_18810001 chr2L_18810001 RAL-356 184 chr2L 18883852 18883888 chr2L 18883934 18883970 7 78 0.5 4.5 2.5 2.0 118 chr2L 18883852 intergenic not near genes chr2L 18883911 intergenic not near genes chr2L 18883970 intergenic not near genes chr2L_7_18880001 chr2L_18880001 RAL-356 185 chr2L 19024096 19024097 chr2L 21768291 21768291 4 2744194 9.5 19.0 14.2 0.3 2744195 chr2L 19024096 3` UTR CR43700 - chr2L 20396194 intron CG10947 - chr2L 21768291 intron CG31612 - chr2L_4_20395001 chr2L_20395001 RAL-356 186 chr2L 19070289 19070295 chr2L 19070366 19070376 4 82 9.5 5.5 7.5 0.5 87 chr2L 19070289 intergenic CG10702 - chr2L 19070332 intergenic CG10702 - chr2L 19070376 intergenic not near genes chr2L_4_19070001 chr2L_19070001 RAL-356 187 chr2L 19147378 19147389 chr2L 19154408 19154424 297 5 7032 4.0 2.5 3.2 1.2 7046 chr2L 19147378 intron brat + chr2L 19150901 intron brat + chr2L 19154424 intron brat + chr2L_5_19150001 chr2L_19150001 RAL-356 188 chr2L 19147390 19147403 chr2L 19154404 19154437 297 6 7024 2.0 2.0 2.0 2.0 7047 chr2L 19147390 intron brat + chr2L 19150914 intron brat + chr2L 19154437 intron brat + chr2L_6_19150001 chr2L_19150001 RAL-356 189 chr2L 19226909 19227088 chr2L 19226995 19227175 4 86 11.5 11.5 11.5 0.3 266 chr2L 19226909 intergenic not near genes chr2L 19227042 intergenic not near genes chr2L 19227175 intergenic not near genes chr2L_4_19225001 chr2L_19225001 RAL-356 190 chr2L 19338010 19338034 chr2L 19338095 19338095 4 78 15.5 15.0 15.2 0.2 85 chr2L 19338010 intergenic not near genes chr2L 19338052 intergenic not near genes chr2L 19338095 intergenic not near genes chr2L_4_19335001 chr2L_19335001 RAL-356 191 chr2L 19345027 19345048 chr2L 19357222 19357249 blood 9 12200 1.5 3.0 2.2 2.8 12222 chr2L 19345027 intron dnt - chr2L 19351138 intron dnt - chr2L 19357249 intron dnt - chr2L_9_19350001 chr2L_19350001 RAL-356 192 chr2L 19357548 19357561 chr2L 19357635 19357642 6 86 2.5 2.0 2.2 1.9 94 chr2L 19357548 intron dnt - chr2L 19357595 intron dnt - chr2L 19357642 intron dnt - chr2L_6_19355001 chr2L_19355001 RAL-356 193 chr2L 19469173 19469188 chr2L 19469258 19469273 6 83 7.0 7.0 7.0 0.8 100 chr2L 19469173 5` UTR CR45722 + chr2L 19469223 5` UTR CR45722 + chr2L 19469273 5` UTR CR45722 + chr2L_6_19465001 chr2L_19465001 RAL-356 194 chr2L 19560847 19560865 chr2L 19560916 19560942 6 72 1.5 0.0 0.8 3.3 95 chr2L 19560847 intron Tep5 + chr2L 19560894 exon Tep5 + chr2L 19560942 exon Tep5 + chr2L_6_19560001 chr2L_19560001 RAL-356 195 chr2L 19562529 19562555 chr2L 19562608 19562635 7 75 3.5 3.0 3.2 1.7 106 chr2L 19562529 exon Tep5 + chr2L 19562582 intron Tep5 + chr2L 19562635 exon Tep5 + chr2L_7_19560001 chr2L_19560001 RAL-356 196 chr2L 19620113 19620130 chr2L 19621086 19621119 jockey 10 978 6.5 3.5 5.0 1.7 1006 chr2L 19620113 intron Lar + chr2L 19620616 intron Lar + chr2L 19621119 intron Lar + chr2L_10_19620001 chr2L_19620001 RAL-356 197 chr2L 19652572 19652593 chr2L 19674006 19674008 opus 4 21424 4.0 1.5 2.8 1.1 21436 chr2L 19652572 intron Lar + chr2L 19663290 intron Lar + chr2L 19674008 intron Lar + chr2L_4_19660001 chr2L_19660001 RAL-356 198 chr2L 19703538 19703570 chr2L 19712674 19712686 roo 6 9131 5.5 2.0 3.8 1.2 9148 chr2L 19703538 intron Lar + chr2L 19708112 intron Lar + chr2L 19712686 intron Lar + chr2L_6_19705001 chr2L_19705001 RAL-356 199 chr2L 19762809 19762838 chr2L 19763051 19763080 pogo 4 240 3.0 2.0 2.5 1.1 271 chr2L 19762809 5` UTR fbp - chr2L 19762944 intron fbp - chr2L 19763080 intron fbp - chr2L_4_19760001 chr2L_19760001 RAL-356 200 chr2L 19773176 19773189 chr2L 19773248 19773266 4 81 2.0 1.0 1.5 1.6 90 chr2L 19773176 intergenic not near genes chr2L 19773221 intergenic not near genes chr2L 19773266 intergenic not near genes chr2L_4_19770001 chr2L_19770001 RAL-356 201 chr2L 19837281 19837308 chr2L 19837355 19837375 13 73 4.0 4.0 4.0 2.6 94 chr2L 19837281 intron sick + chr2L 19837328 intron sick + chr2L 19837375 intron sick + chr2L_13_19835001 chr2L_19835001 RAL-356 202 chr2L 19846264 19846275 chr2L 19846325 19846335 8 67 0.5 2.5 1.5 3.2 71 chr2L 19846264 intron sick + chr2L 19846300 intron sick + chr2L 19846335 intron sick + chr2L_8_19845001 chr2L_19845001 RAL-356 203 chr2L 19901497 19901508 chr2L 19901594 19901610 5 99 6.5 1.5 4.0 1.0 113 chr2L 19901497 intron sick + chr2L 19901554 intron sick + chr2L 19901610 intron sick + chr2L_5_19900001 chr2L_19900001 RAL-356 204 chr2L 19911311 19911317 chr2L 19911378 19911390 4 72 3.5 3.5 3.5 0.9 79 chr2L 19911311 intron,3` UTR sick +,CR43097 - chr2L 19911350 intron,3` UTR sick +,CR43097 - chr2L 19911390 intron,3` UTR sick +,CR43097 - chr2L_4_19910001 chr2L_19910001 RAL-356 205 chr2L 20085487 20085495 chr2L 20085565 20085574 5 83 2.5 6.0 4.2 1.0 87 chr2L 20085487 intron neb + chr2L 20085530 intron neb + chr2L 20085574 intron neb + chr2L_5_20085001 chr2L_20085001 RAL-356 206 chr2L 20272127 20272145 chr2L 20282822 20282841 copia 5 10701 0.5 1.0 0.8 2.8 10714 chr2L 20272127 intergenic not near genes chr2L 20277484 intergenic not near genes chr2L 20282841 intergenic not near genes chr2L_5_20275001 chr2L_20275001 RAL-356 207 chr2L 20296508 20296541 chr2L 20296589 20296620 8 74 1.0 2.5 1.8 2.9 112 chr2L 20296508 intergenic CR43414 - chr2L 20296564 intergenic CR43414 - chr2L 20296620 intergenic CR43414 - chr2L_8_20295001 chr2L_20295001 RAL-356 208 chr2L 20310881 20310919 chr2L 20310958 20310998 6 72 0.0 1.5 0.8 3.3 117 chr2L 20310881 intergenic spir + chr2L 20310940 intergenic spir + chr2L 20310998 intergenic spir + chr2L_6_20310001 chr2L_20310001 RAL-356 209 chr2L 20376081 20376094 chr2L 20376200 20376212 5 119 8.5 7.5 8.0 0.6 131 chr2L 20376081 intergenic not near genes chr2L 20376146 intergenic not near genes chr2L 20376212 intergenic not near genes chr2L_5_20375001 chr2L_20375001 RAL-356 210 chr2L 20530783 20530799 chr2L 20530911 20530927 4 128 5.5 6.5 6.0 0.6 144 chr2L 20530783 intergenic CG44270 + chr2L 20530855 intergenic CG44270 + chr2L 20530927 intergenic CG44270 + chr2L_4_20530001 chr2L_20530001 RAL-356 211 chr2L 20568660 20568683 chr2L 20569050 20569067 X-element 5 389 2.0 2.5 2.2 1.6 407 chr2L 20568660 intron CR45347 + chr2L 20568864 intron CR45347 + chr2L 20569067 intron CR45347 + chr2L_5_20565001 chr2L_20565001 RAL-356 212 chr2L 20901471 20901480 chr2L 20902623 20902625 1360 6 1155 5.5 4.5 5.0 1.0 1154 chr2L 20901471 intron,intron CG43739 -,sky - chr2L 20902048 intron,intron CG43739 -,sky - chr2L 20902625 intron,intron CG43739 -,sky - chr2L_6_20900001 chr2L_20900001 RAL-356 213 chr2L 20976660 20976681 chr2L 20981457 20981489 X-element 6 4802 1.5 4.0 2.8 1.6 4829 chr2L 20976660 intron CG42238 - chr2L 20979074 intron CG42238 - chr2L 20981489 intron CG42238 - chr2L_6_20975001 chr2L_20975001 RAL-356 214 chr2L 20984737 20984770 chr2L 20984829 20984862 5 85 5.5 7.0 6.2 0.7 125 chr2L 20984737 intron CG42238 - chr2L 20984800 intron CG42238 - chr2L 20984862 intron CG42238 - chr2L_5_20980001 chr2L_20980001 RAL-356 215 chr2L 21020287 21020309 chr2L 21023951 21023986 NOF 5 3663 1.5 1.5 1.5 2.0 3699 chr2L 21020287 intron CG42238 - chr2L 21022136 intron CG42238 - chr2L 21023986 intron CG42238 - chr2L_5_21020001 chr2L_21020001 RAL-356 216 chr2L 21084119 21084128 chr2L 21088159 21088180 5 4041 12.5 36.5 24.5 0.2 4061 chr2L 21084119 exon CG33510 - chr2L 21086150 intron CG33509 - chr2L 21088180 exon ppk13 - chr2L_5_21085001 chr2L_21085001 RAL-356 217 chr2L 21394388 21394399 chr2L 21394460 21394478 4 73 16.5 15.0 15.8 0.2 90 chr2L 21394388 intergenic not near genes chr2L 21394433 intergenic not near genes chr2L 21394478 intergenic not near genes chr2L_4_21390001 chr2L_21390001 RAL-356 218 chr2L 21755507 21755519 chr2L 21755616 21755643 4 120 3.5 1.0 2.2 1.2 136 chr2L 21755507 intron step - chr2L 21755575 intron step - chr2L 21755643 intron step - chr2L_4_21755001 chr2L_21755001 RAL-356 219 chr2L 21981688 21981709 chr2L 21990853 21990856 roo 8 9162 1.0 4.0 2.5 2.3 9168 chr2L 21981688 exon CG2528 - chr2L 21986272 intron CG2528 - chr2L 21990856 exon CG2528 - chr2L_8_21985001 chr2L_21985001 RAL-356 220 chr2L 22239438 22239458 chr2L 22239506 22239539 6 72 5.0 4.5 4.8 1.0 101 chr2L 22239438 3` UTR CR43765 - chr2L 22239488 3` UTR CR43765 - chr2L 22239539 3` UTR CR43765 - chr2L_6_22235001 chr2L_22235001 RAL-356 221 chr2R 529328 529347 chr2R 537953 537956 Max-element 6 8621 1.5 1.5 1.5 2.4 8628 chr2R 529328 intron CG40378 + chr2R 533642 intron CG40378 + chr2R 537956 intron CG40378 + chr2R_6_530001 chr2R_530001 RAL-356 222 chr2R 1082377 1082384 chr2R 1087130 1087160 Doc 7 4762 4.5 6.5 5.5 1.1 4783 chr2R 1082377 intron rl + chr2R 1084768 intron rl + chr2R 1087160 intron rl + chr2R_7_1080001 chr2R_1080001 RAL-356 223 chr2R 2498988 2499016 chr2R 2508130 2508163 roo 6 9143 2.5 2.0 2.2 1.9 9175 chr2R 2498988 intron MFS17 - chr2R 2503576 intron MFS17 - chr2R 2508163 intron MFS17 - chr2R_6_2500001 chr2R_2500001 RAL-356 224 chr2R 3291952 3292102 chr2R 3915108 3915262 4 623161 3.0 26.0 14.5 0.3 623310 chr2R 3291952 intergenic not near genes chr2R 3603607 intergenic not near genes chr2R 3915262 intron uex - chr2R_4_3600001 chr2R_3600001 RAL-356 225 chr2R 4564422 4564428 chr2R 4565173 4565195 4 755 3.0 3.0 3.0 1.0 773 chr2R 4564422 intron Stlk + chr2R 4564808 3` UTR Stlk + chr2R 4565195 3` UTR Stlk + chr2R_4_4560001 chr2R_4560001 RAL-356 226 chr2R 4604563 4604579 chr2R 4604630 4604658 9 73 6.0 3.5 4.8 1.6 95 chr2R 4604563 intron p120ctn + chr2R 4604610 intron p120ctn + chr2R 4604658 intron p120ctn + chr2R_9_4600001 chr2R_4600001 RAL-356 227 chr2R 4622969 4622984 chr2R 4624109 4624129 1360 5 1145 4.0 2.0 3.0 1.2 1160 chr2R 4622969 intergenic CR44101 - chr2R 4623549 intergenic not near genes chr2R 4624129 intergenic not near genes chr2R_5_4620001 chr2R_4620001 RAL-356 228 chr2R 4624650 4624670 chr2R 4626544 4626575 Bica 5 1898 6.5 8.5 7.5 0.6 1925 chr2R 4624650 intergenic not near genes chr2R 4625612 intergenic not near genes chr2R 4626575 intergenic not near genes chr2R_5_4625001 chr2R_4625001 RAL-356 229 chr2R 4634162 4634180 chr2R 4634239 4634259 4 76 4.5 9.0 6.8 0.5 97 chr2R 4634162 intergenic not near genes chr2R 4634210 intergenic not near genes chr2R 4634259 intergenic not near genes chr2R_4_4630001 chr2R_4630001 RAL-356 230 chr2R 4656780 4656804 chr2R 4656884 4656903 5 99 12.5 18.0 15.2 0.3 123 chr2R 4656780 intergenic not near genes chr2R 4656842 intergenic not near genes chr2R 4656903 intergenic not near genes chr2R_5_4655001 chr2R_4655001 RAL-356 231 chr2R 4750353 4750374 chr2R 4751510 4751525 1360 4 1153 4.5 6.5 5.5 0.6 1172 chr2R 4750353 intron conu + chr2R 4750939 intron conu + chr2R 4751525 intron conu + chr2R_4_4750001 chr2R_4750001 RAL-356 232 chr2R 4819849 4819873 chr2R 4819938 4819962 8 89 4.5 5.0 4.8 1.4 113 chr2R 4819849 exon CG17528 - chr2R 4819906 exon CG17528 - chr2R 4819962 intron CG17528 - chr2R_8_4815001 chr2R_4815001 RAL-356 233 chr2R 4957017 4957047 chr2R 4957118 4957147 4 102 3.5 6.0 4.8 0.7 130 chr2R 4957017 intron Ir41a + chr2R 4957082 intron Ir41a + chr2R 4957147 intron Ir41a + chr2R_4_4955001 chr2R_4955001 RAL-356 234 chr2R 5096658 5096685 chr2R 5096738 5096765 4 80 4.5 5.5 5.0 0.7 107 chr2R 5096658 intergenic not near genes chr2R 5096712 intergenic not near genes chr2R 5096765 intergenic not near genes chr2R_4_5095001 chr2R_5095001 RAL-356 235 chr2R 5209780 5209805 chr2R 5210313 5210331 6 529 4.0 1.0 2.5 1.7 551 chr2R 5209780 intron Nipped-A - chr2R 5210056 intron Nipped-A - chr2R 5210331 intron Nipped-A - chr2R_6_5210001 chr2R_5210001 RAL-356 236 chr2R 5455774 5455806 chr2R 5455852 5455867 7 73 3.0 7.5 5.2 1.1 93 chr2R 5455774 3` UTR laccase2 + chr2R 5455820 3` UTR laccase2 + chr2R 5455867 3` UTR laccase2 + chr2R_7_5455001 chr2R_5455001 RAL-356 237 chr2R 5543203 5543223 chr2R 5547273 5547295 invader1 5 4077 1.5 4.5 3.0 1.2 4092 chr2R 5543203 intron CG30438 + chr2R 5545249 intron CG30438 + chr2R 5547295 intron CG30438 + chr2R_5_5545001 chr2R_5545001 RAL-356 238 chr2R 6096715 6096743 chr2R 6101912 6101919 BS 6 5183 5.5 4.5 5.0 1.0 5204 chr2R 6096715 intron EcR - chr2R 6099317 intron EcR - chr2R 6101919 intron EcR - chr2R_6_6095001 chr2R_6095001 RAL-356 239 chr2R 6194691 6194704 chr2R 6194773 6194773 4 76 5.5 6.5 6.0 0.6 82 chr2R 6194691 intron Ptr - chr2R 6194732 intron Ptr - chr2R 6194773 intron Ptr - chr2R_4_6190001 chr2R_6190001 RAL-356 240 chr2R 6206784 6206795 chr2R 6206849 6206851 4 62 5.0 4.5 4.8 0.7 67 chr2R 6206784 intergenic CG17994 - chr2R 6206818 intergenic CG17994 - chr2R 6206851 intergenic CG17994 - chr2R_4_6205001 chr2R_6205001 RAL-356 241 chr2R 6587513 6587531 chr2R 6587576 6587604 7 73 8.0 5.0 6.5 0.9 91 chr2R 6587513 intron jing + chr2R 6587558 intron jing + chr2R 6587604 intron jing + chr2R_7_6585001 chr2R_6585001 RAL-356 242 chr2R 6633203 6633232 chr2R 6633280 6633302 5 70 1.5 0.0 0.8 2.8 99 chr2R 6633203 intergenic Vha16-1 -,Trap1 - chr2R 6633252 intergenic Vha16-1 -,Trap1 - chr2R 6633302 intergenic Vha16-1 -,Trap1 - chr2R_5_6630001 chr2R_6630001 RAL-356 243 chr2R 7235828 7235843 chr2R 7240913 7240932 jockey 8 5087 4.5 4.0 4.2 1.5 5104 chr2R 7235828 intergenic not near genes chr2R 7238380 intergenic not near genes chr2R 7240932 intergenic not near genes chr2R_8_7235001 chr2R_7235001 RAL-356 244 chr2R 7417912 7418158 chr2R 7417998 7418219 6 77 1.5 2.5 2.0 2.0 307 chr2R 7417912 intergenic not near genes chr2R 7418066 intergenic not near genes chr2R 7418219 intergenic not near genes chr2R_6_7415001 chr2R_7415001 RAL-356 245 chr2R 7459286 7459310 chr2R 7459370 7459392 4 81 2.5 0.5 1.5 1.6 106 chr2R 7459286 intergenic CG11141 -,Inos - chr2R 7459339 intergenic CG11141 -,Inos - chr2R 7459392 intergenic CG11141 - chr2R_4_7455001 chr2R_7455001 RAL-356 246 chr2R 7606301 7606326 chr2R 7606377 7606383 6 74 6.0 4.5 5.2 1.0 82 chr2R 7606301 intron CG1358 - chr2R 7606342 intron CG1358 - chr2R 7606383 intron CG1358 - chr2R_6_7605001 chr2R_7605001 RAL-356 247 chr2R 7815680 7815702 chr2R 7822139 7822171 Burdock 8 6462 2.5 0.5 1.5 3.2 6491 chr2R 7815680 intergenic CG1882 + chr2R 7818926 intergenic not near genes chr2R 7822171 3` UTR cathD - chr2R_8_7815001 chr2R_7815001 RAL-356 248 chr2R 7842196 7842227 chr2R 7842281 7842315 7 88 6.5 6.0 6.2 1.0 119 chr2R 7842196 intron Dgk - chr2R 7842256 intron Dgk - chr2R 7842315 intron Dgk - chr2R_7_7840001 chr2R_7840001 RAL-356 249 chr2R 7869188 7869221 chr2R 7873974 7874007 Doc 5 4780 4.0 4.5 4.2 1.0 4819 chr2R 7869188 intron Dgk - chr2R 7871598 intron Dgk - chr2R 7874007 intron Dgk - chr2R_5_7870001 chr2R_7870001 RAL-356 250 chr2R 8006858 8006868 chr2R 8007010 8007024 4 153 1.5 4.0 2.8 1.1 166 chr2R 8006858 intergenic Odc1 +,Odc2 + chr2R 8006941 intergenic Odc1 +,Odc2 + chr2R 8007024 intergenic Odc2 +,Odc1 + chr2R_4_8005001 chr2R_8005001 RAL-356 251 chr2R 8015660 8015682 chr2R 8017667 8017695 4 2016 1.0 5.5 3.2 1.0 2035 chr2R 8015660 intergenic mir-4981 + chr2R 8016678 intergenic not near genes chr2R 8017695 intergenic not near genes chr2R_4_8015001 chr2R_8015001 RAL-356 252 chr2R 8190728 8190748 chr2R 8190812 8190815 7 75 8.5 10.0 9.2 0.7 87 chr2R 8190728 intron LRP1 + chr2R 8190772 intron LRP1 + chr2R 8190815 intron LRP1 + chr2R_7_8190001 chr2R_8190001 RAL-356 253 chr2R 8330865 8330881 chr2R 8331351 8331365 roo 4 486 5.0 2.0 3.5 0.9 500 chr2R 8330865 intron pdm3 + chr2R 8331115 intron pdm3 + chr2R 8331365 intron pdm3 + chr2R_4_8330001 chr2R_8330001 RAL-356 254 chr2R 8330887 8330895 chr2R 8331346 8331362 roo 8 474 2.5 2.0 2.2 2.5 475 chr2R 8330887 intron pdm3 + chr2R 8331124 intron pdm3 + chr2R 8331362 intron pdm3 + chr2R_8_8330001 chr2R_8330001 RAL-356 255 chr2R 8499672 8499701 chr2R 8499921 8499939 5 239 7.0 3.0 5.0 0.8 267 chr2R 8499672 intron mtt - chr2R 8499806 intron mtt - chr2R 8499939 intron mtt - chr2R_5_8495001 chr2R_8495001 RAL-356 256 chr2R 8671811 8671818 chr2R 8671860 8671880 6 66 17.5 13.5 15.5 0.4 69 chr2R 8671811 intron Acsl + chr2R 8671846 intron Acsl + chr2R 8671880 intron Acsl + chr2R_6_8670001 chr2R_8670001 RAL-356 257 chr2R 8722767 8722794 chr2R 8723004 8723022 pogo 7 230 4.0 3.0 3.5 1.6 255 chr2R 8722767 intron CG14767 - chr2R 8722894 intron CG14767 - chr2R 8723022 intron CG14767 - chr2R_7_8720001 chr2R_8720001 RAL-356 258 chr2R 8844477 8844510 chr2R 8844600 8844613 5 118 7.5 12.0 9.8 0.5 136 chr2R 8844477 intron sns + chr2R 8844545 intron sns + chr2R 8844613 intron sns + chr2R_5_8840001 chr2R_8840001 RAL-356 259 chr2R 8941568 8941597 chr2R 8941661 8941684 8 89 9.5 16.0 12.8 0.6 116 chr2R 8941568 intergenic CR44273 +,CG13748 + chr2R 8941626 5` UTR CR44273 + chr2R 8941684 5` UTR CR44273 + chr2R_8_8940001 chr2R_8940001 RAL-356 260 chr2R 8967130 8967149 chr2R 8967218 8967239 4 89 2.5 1.5 2.0 1.3 109 chr2R 8967130 intron CG8216 - chr2R 8967184 intron CG8216 - chr2R 8967239 intron CG8216 - chr2R_4_8965001 chr2R_8965001 RAL-356 261 chr2R 8983311 8983339 chr2R 8983394 8983398 5 73 16.0 14.5 15.2 0.3 87 chr2R 8983311 intron CG8213 - chr2R 8983354 intron CG8213 - chr2R 8983398 intron CG8213 - chr2R_5_8980001 chr2R_8980001 RAL-356 262 chr2R 9047338 9047436 chr2R 9047422 9047531 4 86 0.0 0.0 0.0 4.0 193 chr2R 9047338 intron CG13743 - chr2R 9047434 intron CG13743 - chr2R 9047531 intron CG13743 - chr2R_4_9045001 chr2R_9045001 RAL-356 263 chr2R 9065914 9065950 chr2R 9065996 9066018 7 70 1.5 1.0 1.2 3.2 104 chr2R 9065914 intron ana + chr2R 9065966 intron ana + chr2R 9066018 intron ana + chr2R_7_9065001 chr2R_9065001 RAL-356 264 chr2R 9178074 9178108 chr2R 9178156 9178189 6 78 13.5 15.5 14.5 0.4 115 chr2R 9178074 3` UTR ltd - chr2R 9178132 3` UTR ltd - chr2R 9178189 3` UTR ltd - chr2R_6_9175001 chr2R_9175001 RAL-356 265 chr2R 9212712 9212726 chr2R 9213181 9213194 roo 7 475 4.0 5.0 4.5 1.3 482 chr2R 9212712 intergenic CR45309 + chr2R 9212953 intergenic CR45309 + chr2R 9213194 5` UTR CR45309 + chr2R_7_9210001 chr2R_9210001 RAL-356 266 chr2R 9510669 9510697 chr2R 9510784 9510799 8 108 3.5 2.5 3.0 2.0 130 chr2R 9510669 intron brp + chr2R 9510734 intron brp + chr2R 9510799 intron brp + chr2R_8_9510001 chr2R_9510001 RAL-356 267 chr2R 10005852 10005861 chr2R 10007016 10007023 1360 4 1162 9.0 5.5 7.2 0.5 1171 chr2R 10005852 intron Pka-R2 - chr2R 10006438 intron Pka-R2 - chr2R 10007023 intron Pka-R2 - chr2R_4_10005001 chr2R_10005001 RAL-356 268 chr2R 10005862 10005884 chr2R 10007013 10007040 1360 10 1150 3.0 4.5 3.8 2.1 1178 chr2R 10005862 intron Pka-R2 - chr2R 10006451 intron Pka-R2 - chr2R 10007040 intron Pka-R2 - chr2R_10_10005001 chr2R_10005001 RAL-356 269 chr2R 10171130 10171143 chr2R 10171198 10171226 4 76 0.0 3.0 1.5 1.6 96 chr2R 10171130 intron KCNQ - chr2R 10171178 intron KCNQ - chr2R 10171226 intron KCNQ - chr2R_4_10170001 chr2R_10170001 RAL-356 270 chr2R 10300651 10300655 chr2R 10300747 10300751 4 96 3.0 0.0 1.5 1.6 100 chr2R 10300651 intron CAP + chr2R 10300701 intron CAP + chr2R 10300751 intron CAP + chr2R_4_10300001 chr2R_10300001 RAL-356 271 chr2R 10313319 10313349 chr2R 10313407 10313421 5 73 3.5 0.0 1.8 1.8 102 chr2R 10313319 intergenic not near genes chr2R 10313370 intergenic not near genes chr2R 10313421 intergenic Ndg + chr2R_5_10310001 chr2R_10310001 RAL-356 272 chr2R 10318521 10318538 chr2R 10318601 10318624 5 84 0.0 2.5 1.2 2.3 103 chr2R 10318521 intron Ndg + chr2R 10318572 intron Ndg + chr2R 10318624 intron Ndg + chr2R_5_10315001 chr2R_10315001 RAL-356 273 chr2R 10319715 10319739 chr2R 10319807 10319831 6 87 4.0 1.0 2.5 1.7 116 chr2R 10319715 intron Ndg + chr2R 10319773 intron Ndg + chr2R 10319831 intron Ndg + chr2R_6_10315001 chr2R_10315001 RAL-356 274 chr2R 10352676 10352703 chr2R 10352753 10352775 7 69 1.5 1.0 1.2 3.2 99 chr2R 10352676 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352726 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352775 intron,exon,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R_7_10350001 chr2R_10350001 RAL-356 275 chr2R 10387977 10388002 chr2R 10388074 10388099 6 91 0.0 4.0 2.0 2.0 122 chr2R 10387977 intron CG42732 - chr2R 10388038 intron CG42732 - chr2R 10388099 intron CG42732 - chr2R_6_10385001 chr2R_10385001 RAL-356 276 chr2R 10409079 10409082 chr2R 10409137 10409158 4 66 0.0 1.0 0.5 2.7 79 chr2R 10409079 intron CG42732 - chr2R 10409118 intron CG42732 - chr2R 10409158 intron,exon CG42732 -,CG33477 - chr2R_4_10405001 chr2R_10405001 RAL-356 277 chr2R 10454111 10454130 chr2R 10454172 10454207 10 70 1.5 1.5 1.5 4.0 96 chr2R 10454111 intron,intron Galphao +,Cyp49a1 - chr2R 10454159 intron,intron Galphao +,Cyp49a1 - chr2R 10454207 intron,intron Galphao +,Cyp49a1 - chr2R_10_10450001 chr2R_10450001 RAL-356 278 chr2R 10469021 10469049 chr2R 10469147 10469163 14 122 5.5 2.5 4.0 2.8 142 chr2R 10469021 intron CG11777 + chr2R 10469092 intron CG11777 + chr2R 10469163 intron CG11777 + chr2R_14_10465001 chr2R_10465001 RAL-356 279 chr2R 10585578 10585585 chr2R 10594153 10594168 Tirant 6 8580 3.0 4.0 3.5 1.3 8590 chr2R 10585578 intron psq + chr2R 10589873 intron psq + chr2R 10594168 intron psq + chr2R_6_10585001 chr2R_10585001 RAL-356 280 chr2R 10585589 10585591 chr2R 10594149 10594170 Tirant 5 8572 3.0 3.5 3.2 1.2 8581 chr2R 10585589 intron psq + chr2R 10589880 intron psq + chr2R 10594170 intron psq + chr2R_5_10585001 chr2R_10585001 RAL-356 281 chr2R 10617855 10617863 chr2R 10617914 10617940 4 64 3.5 5.0 4.2 0.8 85 chr2R 10617855 intron CG11883 + chr2R 10617898 intron CG11883 + chr2R 10617940 intron CG11883 + chr2R_4_10615001 chr2R_10615001 RAL-356 282 chr2R 10671435 10671443 chr2R 10671568 10671576 4 133 1.0 11.0 6.0 0.6 141 chr2R 10671435 intergenic not near genes chr2R 10671506 intergenic not near genes chr2R 10671576 intergenic not near genes chr2R_4_10670001 chr2R_10670001 RAL-356 283 chr2R 10697612 10697628 chr2R 10697835 10697858 6 228 3.5 4.0 3.8 1.2 246 chr2R 10697612 intron stan + chr2R 10697735 intron stan + chr2R 10697858 intron stan + chr2R_6_10695001 chr2R_10695001 RAL-356 284 chr2R 10743190 10743200 chr2R 10743268 10743276 4 76 8.0 6.0 7.0 0.5 86 chr2R 10743190 intron CG33144 - chr2R 10743233 intron CG33144 - chr2R 10743276 intron CG33144 - chr2R_4_10740001 chr2R_10740001 RAL-356 285 chr2R 10748730 10748761 chr2R 10748809 10748841 10 72 2.5 2.5 2.5 2.9 111 chr2R 10748730 intron CG33144 - chr2R 10748786 intron CG33144 - chr2R 10748841 intron CG33144 - chr2R_10_10745001 chr2R_10745001 RAL-356 286 chr2R 10758794 10758827 chr2R 10758893 10758926 7 92 3.5 4.0 3.8 1.5 132 chr2R 10758794 intron CG33144 - chr2R 10758860 intron CG33144 - chr2R 10758926 intron CG33144 - chr2R_7_10755001 chr2R_10755001 RAL-356 287 chr2R 10761559 10761589 chr2R 10761713 10761734 8 148 2.5 4.0 3.2 1.9 175 chr2R 10761559 intron,5` UTR CG33144 -,CR43605 + chr2R 10761646 intron,5` UTR CG33144 -,CR43605 + chr2R 10761734 intron CG33144 - chr2R_8_10760001 chr2R_10760001 RAL-356 288 chr2R 10790160 10790174 chr2R 10790229 10790261 7 76 3.0 1.5 2.2 2.2 101 chr2R 10790160 intron CG33144 - chr2R 10790210 intron CG33144 - chr2R 10790261 intron CG33144 - chr2R_7_10790001 chr2R_10790001 RAL-356 289 chr2R 10796727 10796732 chr2R 10796805 10796828 5 89 4.0 1.0 2.5 1.4 101 chr2R 10796727 intron CG33144 - chr2R 10796778 intron CG33144 - chr2R 10796828 intron CG33144 - chr2R_5_10795001 chr2R_10795001 RAL-356 290 chr2R 10849598 10849611 chr2R 10849735 10849763 4 146 3.0 3.0 3.0 1.0 165 chr2R 10849598 intron CG30015 - chr2R 10849680 intron CG30015 - chr2R 10849763 intron CG30015 - chr2R_4_10845001 chr2R_10845001 RAL-356 291 chr2R 10948027 10948062 chr2R 10955576 10955590 17.6 6 7540 2.0 3.0 2.5 1.7 7563 chr2R 10948027 intergenic not near genes chr2R 10951808 intergenic not near genes chr2R 10955590 intergenic not near genes chr2R_6_10950001 chr2R_10950001 RAL-356 292 chr2R 11019892 11019898 chr2R 11024958 11024963 jockey 4 5065 5.5 3.0 4.2 0.8 5071 chr2R 11019892 intron luna - chr2R 11022428 intron luna - chr2R 11024963 intron luna - chr2R_4_11020001 chr2R_11020001 RAL-356 293 chr2R 11076392 11076422 chr2R 11076468 11076468 12 68 4.0 2.0 3.0 3.0 76 chr2R 11076392 intron luna - chr2R 11076430 intron luna - chr2R 11076468 intron luna - chr2R_12_11075001 chr2R_11075001 RAL-356 294 chr2R 11102865 11102889 chr2R 11102947 11102970 4 82 6.5 0.0 3.2 1.0 105 chr2R 11102865 intron luna - chr2R 11102918 intron luna - chr2R 11102970 intron luna - chr2R_4_11100001 chr2R_11100001 RAL-356 295 chr2R 11129833 11129848 chr2R 11129898 11129923 4 66 2.5 2.5 2.5 1.1 90 chr2R 11129833 intergenic not near genes chr2R 11129878 intergenic not near genes chr2R 11129923 intergenic not near genes chr2R_4_11125001 chr2R_11125001 RAL-356 296 chr2R 11172805 11172819 chr2R 11172880 11172894 4 75 5.5 5.5 5.5 0.6 89 chr2R 11172805 intron shn + chr2R 11172850 intron shn + chr2R 11172894 intron shn + chr2R_4_11170001 chr2R_11170001 RAL-356 297 chr2R 11179268 11179293 chr2R 11179354 11179361 5 80 4.5 3.5 4.0 1.0 93 chr2R 11179268 intron shn + chr2R 11179314 intron shn + chr2R 11179361 intron shn + chr2R_5_11175001 chr2R_11175001 RAL-356 298 chr2R 11207816 11207852 chr2R 11208006 11208025 BS 8 185 3.5 2.0 2.8 2.1 209 chr2R 11207816 intron shn + chr2R 11207920 intron shn + chr2R 11208025 intron shn + chr2R_8_11205001 chr2R_11205001 RAL-356 299 chr2R 11415523 11415550 chr2R 11418665 11418683 opus 10 3140 0.5 2.5 1.5 4.0 3160 chr2R 11415523 intron Drip - chr2R 11417103 intron Drip - chr2R 11418683 intron Drip - chr2R_10_11415001 chr2R_11415001 RAL-356 300 chr2R 11922749 11922767 chr2R 11922816 11922846 6 73 2.5 0.5 1.5 2.4 97 chr2R 11922749 intergenic not near genes chr2R 11922798 intergenic not near genes chr2R 11922846 intergenic not near genes chr2R_6_11920001 chr2R_11920001 RAL-356 301 chr2R 12010892 12010908 chr2R 12010960 12010977 4 70 2.0 2.5 2.2 1.2 85 chr2R 12010892 intron otk - chr2R 12010934 intron otk - chr2R 12010977 intron otk - chr2R_4_12010001 chr2R_12010001 RAL-356 302 chr2R 8518772 8518784 chr2R 12066175 12066206 7 3547407 9.0 16.0 12.5 0.5 3547434 chr2R 8518772 intron mtt - chr2R 10292489 intron CAP + chr2R 12066206 intron CG8888 - chr2R_7_10290001 chr2R_10290001 RAL-356 303 chr2R 12146487 12146501 chr2R 12147590 12147610 8 1104 12.5 25.0 18.8 0.4 1123 chr2R 12146487 intron,3` UTR Hen1 +,CG8878 - chr2R 12147048 intron,exon Hen1 +,CG8878 - chr2R 12147610 intron,exon Hen1 +,CG8878 - chr2R_8_12145001 chr2R_12145001 RAL-356 304 chr2R 12145920 12145928 chr2R 12148615 12148621 5 2695 27.0 37.0 32.0 0.2 2701 chr2R 12145920 exon Hen1 + chr2R 12147270 intron,intron Hen1 +,CG8878 - chr2R 12148621 intron,exon Hen1 +,CG8878 - chr2R_5_12145001 chr2R_12145001 RAL-356 305 chr2R 12145913 12145931 chr2R 12148635 12148640 6 2708 28.0 30.0 29.0 0.2 2727 chr2R 12145913 exon Hen1 + chr2R 12147276 intron,intron Hen1 +,CG8878 - chr2R 12148640 intron,exon Hen1 +,CG8878 - chr2R_6_12145001 chr2R_12145001 RAL-356 306 chr2R 12187471 12187495 chr2R 12190098 12190124 24 2627 61.5 46.5 54.0 0.4 2653 chr2R 12187471 exon Cyp6g1 + chr2R 12188798 exon Cyp6g2 - chr2R 12190124 exon Cyp6g2 - chr2R_24_12185001 chr2R_12185001 RAL-356 307 chr2R 12210133 12210157 chr2R 12210214 12210235 6 80 1.0 4.0 2.5 1.7 102 chr2R 12210133 exon Sr-CII - chr2R 12210184 intron Sr-CII - chr2R 12210235 intron Sr-CII - chr2R_6_12210001 chr2R_12210001 RAL-356 308 chr2R 12363399 12363418 chr2R 12363814 12363836 13 419 3.5 3.5 3.5 2.9 437 chr2R 12363399 intergenic CG30043 + chr2R 12363618 intergenic CG30043 + chr2R 12363836 intergenic not near genes chr2R_13_12360001 chr2R_12360001 RAL-356 309 chr2R 12479150 12479153 chr2R 12479220 12479241 4 79 0.5 4.0 2.2 1.2 91 chr2R 12479150 intron Dh44-R2 + chr2R 12479196 intron Dh44-R2 + chr2R 12479241 intron Dh44-R2 + chr2R_4_12475001 chr2R_12475001 RAL-356 310 chr2R 12481147 12481169 chr2R 12482938 12482973 roo 6 1794 1.0 3.5 2.2 1.9 1826 chr2R 12481147 exon Dh44-R2 + chr2R 12482060 intron Dh44-R2 + chr2R 12482973 intron Dh44-R2 + chr2R_6_12480001 chr2R_12480001 RAL-356 311 chr2R 12501703 12501723 chr2R 12503865 12503870 Rt1c 6 2158 2.5 6.0 4.2 1.2 2167 chr2R 12501703 intron fdl - chr2R 12502786 intron fdl - chr2R 12503870 intron fdl - chr2R_6_12500001 chr2R_12500001 RAL-356 312 chr2R 12695250 12695271 chr2R 12695328 12695329 4 74 5.5 0.0 2.8 1.1 79 chr2R 12695250 intergenic not near genes chr2R 12695290 intergenic not near genes chr2R 12695329 intergenic not near genes chr2R_4_12695001 chr2R_12695001 RAL-356 313 chr2R 12819470 12819479 chr2R 12824523 12824532 jockey 5 5062 3.5 5.5 4.5 0.9 5062 chr2R 12819470 intergenic not near genes chr2R 12822001 intergenic not near genes chr2R 12824532 intergenic not near genes chr2R_5_12820001 chr2R_12820001 RAL-356 314 chr2R 13136841 13136855 chr2R 13141639 13141653 Doc 6 4798 9.5 3.0 6.2 0.8 4812 chr2R 13136841 exon Cap-G + chr2R 13139247 intron Cap-G + chr2R 13141653 intron Cap-G + chr2R_6_13135001 chr2R_13135001 RAL-356 315 chr2R 13136856 13136859 chr2R 13141636 13141638 Doc 5 4782 7.0 3.0 5.0 0.8 4782 chr2R 13136856 exon Cap-G + chr2R 13139247 intron Cap-G + chr2R 13141638 intron Cap-G + chr2R_5_13135001 chr2R_13135001 RAL-356 316 chr2R 13136860 13136867 chr2R 13141633 13141665 Doc 6 4780 6.5 2.5 4.5 1.1 4805 chr2R 13136860 intron Cap-G + chr2R 13139262 intron Cap-G + chr2R 13141665 intron Cap-G + chr2R_6_13135001 chr2R_13135001 RAL-356 317 chr2R 13387157 13387177 chr2R 13387230 13387259 5 76 9.5 11.5 10.5 0.4 102 chr2R 13387157 intergenic not near genes chr2R 13387208 intergenic not near genes chr2R 13387259 intergenic not near genes chr2R_5_13385001 chr2R_13385001 RAL-356 318 chr2R 13431507 13431518 chr2R 13431569 13431596 4 70 6.5 7.5 7.0 0.5 89 chr2R 13431507 intron CG42321 - chr2R 13431552 intron CG42321 - chr2R 13431596 intron CG42321 - chr2R_4_13430001 chr2R_13430001 RAL-356 319 chr2R 13492606 13492607 chr2R 13492666 13492674 4 62 5.5 6.0 5.8 0.6 68 chr2R 13492606 intron bbc - chr2R 13492640 intron bbc - chr2R 13492674 intron bbc - chr2R_4_13490001 chr2R_13490001 RAL-356 320 chr2R 13580518 13580533 chr2R 13580848 13580865 jockey 4 335 1.5 3.0 2.2 1.2 347 chr2R 13580518 3` UTR CG6191 - chr2R 13580692 3` UTR,3` UTR CG6191 -,CG45088 - chr2R 13580865 3` UTR,3` UTR CG6191 -,CG45088 - chr2R_4_13580001 chr2R_13580001 RAL-356 321 chr2R 13652709 13652724 chr2R 13652787 13652802 4 78 9.0 9.5 9.2 0.4 93 chr2R 13652709 intron fas + chr2R 13652756 intron fas + chr2R 13652802 intron fas + chr2R_4_13650001 chr2R_13650001 RAL-356 322 chr2R 13768988 13769007 chr2R 13769079 13769105 4 93 2.0 4.5 3.2 1.0 117 chr2R 13768988 intergenic not near genes chr2R 13769046 intergenic not near genes chr2R 13769105 intergenic not near genes chr2R_4_13765001 chr2R_13765001 RAL-356 323 chr2R 13905614 13905631 chr2R 13907581 13907597 Rt1a 8 1970 3.5 3.0 3.2 1.9 1983 chr2R 13905614 intron shot - chr2R 13906606 intron shot - chr2R 13907597 intron shot - chr2R_8_13905001 chr2R_13905001 RAL-356 324 chr2R 14014972 14015000 chr2R 14015766 14015794 5 791 2.5 2.5 2.5 1.4 822 chr2R 14014972 intron mam + chr2R 14015383 intron mam + chr2R 14015794 intron mam + chr2R_5_14015001 chr2R_14015001 RAL-356 325 chr2R 14365308 14365334 chr2R 14365378 14365412 8 71 6.0 6.0 6.0 1.1 104 chr2R 14365308 exon Tfb1 + chr2R 14365360 3` UTR Tfb1 + chr2R 14365412 3` UTR Tfb1 + chr2R_8_14365001 chr2R_14365001 RAL-356 326 chr2R 14392591 14392603 chr2R 14392662 14392689 7 79 7.0 2.5 4.8 1.2 98 chr2R 14392591 intergenic CG10104 + chr2R 14392640 intergenic CG10104 + chr2R 14392689 intergenic CG10104 + chr2R_7_14390001 chr2R_14390001 RAL-356 327 chr2R 14467304 14467326 chr2R 14476443 14476477 roo 7 9143 3.5 11.5 7.5 0.8 9173 chr2R 14467304 intergenic not near genes chr2R 14471890 intergenic not near genes chr2R 14476477 5` UTR CR44462 + chr2R_7_14470001 chr2R_14470001 RAL-356 328 chr2R 14497394 14497422 chr2R 14498551 14498574 1360 4 1149 0.5 1.5 1.0 2.0 1180 chr2R 14497394 3` UTR Cpsf160 - chr2R 14497984 intron Cpsf160 - chr2R 14498574 3` UTR Cpsf160 - chr2R_4_14495001 chr2R_14495001 RAL-356 329 chr2R 14530786 14530789 chr2R 14530846 14530863 4 70 2.5 1.5 2.0 1.3 77 chr2R 14530786 intron ttv + chr2R 14530824 intron ttv + chr2R 14530863 intron ttv + chr2R_4_14530001 chr2R_14530001 RAL-356 330 chr2R 14565561 14565589 chr2R 14565638 14565645 5 69 2.0 4.0 3.0 1.2 84 chr2R 14565561 intron ttv + chr2R 14565603 intron ttv + chr2R 14565645 intron ttv + chr2R_5_14565001 chr2R_14565001 RAL-356 331 chr2R 14849434 14849451 chr2R 14850064 14850081 4 628 26.5 22.5 24.5 0.2 647 chr2R 14849434 exon SMC2 - chr2R 14849758 exon SMC2 - chr2R 14850081 exon SMC2 - chr2R_4_14845001 chr2R_14845001 RAL-356 332 chr2R 14889231 14889241 chr2R 14897817 14897828 Max-element 5 8592 5.0 0.0 2.5 1.4 8597 chr2R 14889231 intergenic Cyp6a8 - chr2R 14893530 intergenic not near genes chr2R 14897828 intergenic not near genes chr2R_5_14890001 chr2R_14890001 RAL-356 333 chr2R 14911700 14911727 chr2R 14911823 14911831 6 116 2.0 2.5 2.2 1.9 131 chr2R 14911700 intron CG10249 - chr2R 14911766 intron CG10249 - chr2R 14911831 intron CG10249 - chr2R_6_14910001 chr2R_14910001 RAL-356 334 chr2R 14922159 14922173 chr2R 14922217 14922248 10 65 3.0 2.0 2.5 2.9 89 chr2R 14922159 intron CG10249 - chr2R 14922204 intron CG10249 - chr2R 14922248 intron CG10249 - chr2R_10_14920001 chr2R_14920001 RAL-356 335 chr2R 15015478 15015485 chr2R 15022880 15022890 mdg1 4 7406 1.0 0.0 0.5 2.7 7412 chr2R 15015478 intron hbs + chr2R 15019184 intron hbs + chr2R 15022890 intron hbs + chr2R_4_15015001 chr2R_15015001 RAL-356 336 chr2R 15084979 15085007 chr2R 15092028 15092046 297 4 7043 2.0 1.5 1.8 1.4 7067 chr2R 15084979 intergenic not near genes chr2R 15088512 intergenic not near genes chr2R 15092046 5` UTR CR44457 + chr2R_4_15085001 chr2R_15085001 RAL-356 337 chr2R 15119332 15119341 chr2R 15127797 15127820 Tirant 4 8476 6.0 4.0 5.0 0.7 8488 chr2R 15119332 intron chn + chr2R 15123576 intron chn + chr2R 15127820 intron chn + chr2R_4_15120001 chr2R_15120001 RAL-356 338 chr2R 15137991 15138001 chr2R 15138052 15138065 4 62 1.0 0.0 0.5 2.7 74 chr2R 15137991 intron chn + chr2R 15138028 intron chn + chr2R 15138065 intron chn + chr2R_4_15135001 chr2R_15135001 RAL-356 339 chr2R 15196105 15196124 chr2R 15196187 15196218 11 87 5.0 3.5 4.2 2.1 113 chr2R 15196105 intergenic not near genes chr2R 15196162 intergenic not near genes chr2R 15196218 intergenic not near genes chr2R_11_15195001 chr2R_15195001 RAL-356 340 chr2R 15307989 15308015 chr2R 15308480 15308496 9 488 1.0 1.5 1.2 4.1 507 chr2R 15307989 intron Trpm - chr2R 15308242 intron Trpm - chr2R 15308496 intron Trpm - chr2R_9_15305001 chr2R_15305001 RAL-356 341 chr2R 15430145 15430160 chr2R 15430282 15430298 4 135 4.0 2.0 3.0 1.0 153 chr2R 15430145 intron CG43729 + chr2R 15430222 intron CG43729 + chr2R 15430298 intron CG43729 + chr2R_4_15430001 chr2R_15430001 RAL-356 342 chr2R 15430162 15430178 chr2R 15430280 15430301 5 123 1.0 2.0 1.5 2.0 139 chr2R 15430162 intron CG43729 + chr2R 15430232 intron CG43729 + chr2R 15430301 intron CG43729 + chr2R_5_15430001 chr2R_15430001 RAL-356 343 chr2R 15801272 15801293 chr2R 15801349 15801366 5 73 4.0 2.5 3.2 1.2 94 chr2R 15801272 intron,intron Zasp52 -,tun + chr2R 15801319 intron,intron Zasp52 -,tun + chr2R 15801366 intron,intron Zasp52 -,tun + chr2R_5_15800001 chr2R_15800001 RAL-356 344 chr2R 16511805 16511829 chr2R 16511896 16511911 9 87 1.0 1.5 1.2 4.1 106 chr2R 16511805 intron Sema-2a + chr2R 16511858 intron Sema-2a + chr2R 16511911 intron Sema-2a + chr2R_9_16510001 chr2R_16510001 RAL-356 345 chr2R 16547014 16547021 chr2R 16547084 16547099 4 74 0.0 0.5 0.2 3.3 85 chr2R 16547014 intergenic not near genes chr2R 16547056 intergenic not near genes chr2R 16547099 intergenic not near genes chr2R_4_16545001 chr2R_16545001 RAL-356 346 chr2R 16617062 16617082 chr2R 16617140 16617140 5 74 2.0 3.0 2.5 1.4 78 chr2R 16617062 intron CG5065 + chr2R 16617101 intron CG5065 + chr2R 16617140 intron CG5065 + chr2R_5_16615001 chr2R_16615001 RAL-356 347 chr2R 16775644 16775676 chr2R 16775908 16775931 10 255 0.5 2.0 1.2 4.5 287 chr2R 16775644 3` UTR Arp53D + chr2R 16775788 intergenic Arp53D + chr2R 16775931 intergenic Arp53D + chr2R_10_16775001 chr2R_16775001 RAL-356 348 chr2R 17147260 17147272 chr2R 17152267 17152298 jockey 4 5014 2.5 3.5 3.0 1.0 5038 chr2R 17147260 intergenic not near genes chr2R 17149779 intergenic not near genes chr2R 17152298 intergenic not near genes chr2R_4_17145001 chr2R_17145001 RAL-356 349 chr2R 17152733 17152744 chr2R 17152838 17152851 6 112 4.5 1.0 2.8 1.6 118 chr2R 17152733 intergenic not near genes chr2R 17152792 intergenic not near genes chr2R 17152851 intergenic not near genes chr2R_6_17150001 chr2R_17150001 RAL-356 350 chr2R 17176364 17176385 chr2R 17182542 17182561 diver 4 6178 0.5 2.5 1.5 1.6 6197 chr2R 17176364 intergenic not near genes chr2R 17179462 intergenic not near genes chr2R 17182561 intergenic not near genes chr2R_4_17175001 chr2R_17175001 RAL-356 351 chr2R 17236517 17236541 chr2R 17241713 17241745 copia 9 5198 1.5 3.5 2.5 2.6 5228 chr2R 17236517 intron mbl + chr2R 17239131 intron mbl + chr2R 17241745 intron mbl + chr2R_9_17235001 chr2R_17235001 RAL-356 352 chr2R 17389288 17389304 chr2R 17389358 17389381 8 75 3.5 4.5 4.0 1.6 93 chr2R 17389288 intergenic CR44344 - chr2R 17389334 intergenic CR44344 - chr2R 17389381 intergenic CR44344 - chr2R_8_17385001 chr2R_17385001 RAL-356 353 chr2R 17459021 17459037 chr2R 17459092 17459104 4 72 3.0 1.5 2.2 1.2 83 chr2R 17459021 intron CG14478 + chr2R 17459062 intron CG14478 + chr2R 17459104 intron CG14478 + chr2R_4_17455001 chr2R_17455001 RAL-356 354 chr2R 17506008 17506020 chr2R 17506070 17506074 5 62 4.0 1.5 2.8 1.3 66 chr2R 17506008 exon CG43164 + chr2R 17506041 intron CG43164 + chr2R 17506074 intron CG43164 + chr2R_5_17505001 chr2R_17505001 RAL-356 355 chr2R 17721347 17721352 chr2R 17721400 17721402 5 59 1.0 1.0 1.0 2.5 55 chr2R 17721347 intergenic not near genes chr2R 17721374 intergenic not near genes chr2R 17721402 intergenic not near genes chr2R_5_17720001 chr2R_17720001 RAL-356 356 chr2R 17784035 17784057 chr2R 17784267 17784295 pogo 12 236 4.5 5.5 5.0 2.0 260 chr2R 17784035 intergenic mir-31a - chr2R 17784165 intergenic mir-31a - chr2R 17784295 intergenic mir-31a - chr2R_12_17780001 chr2R_17780001 RAL-356 357 chr2R 17876346 17876369 chr2R 17876576 17876587 5 228 2.0 1.5 1.8 1.8 241 chr2R 17876346 intron Elk + chr2R 17876466 intron Elk + chr2R 17876587 intron Elk + chr2R_5_17875001 chr2R_17875001 RAL-356 358 chr2R 17886641 17886649 chr2R 17886716 17886728 4 79 6.5 1.5 4.0 0.8 87 chr2R 17886641 intron Elk + chr2R 17886684 intron Elk + chr2R 17886728 intron Elk + chr2R_4_17885001 chr2R_17885001 RAL-356 359 chr2R 17982927 17982953 chr2R 17983010 17983035 11 83 1.5 4.5 3.0 2.8 108 chr2R 17982927 intron dpr13 - chr2R 17982981 intron dpr13 - chr2R 17983035 intron dpr13 - chr2R_11_17980001 chr2R_17980001 RAL-356 360 chr2R 17991314 17991346 chr2R 17991399 17991411 12 80 4.0 5.5 4.8 2.1 97 chr2R 17991314 intron dpr13 - chr2R 17991362 intron dpr13 - chr2R 17991411 intron dpr13 - chr2R_12_17990001 chr2R_17990001 RAL-356 361 chr2R 18111707 18111715 chr2R 18115550 18115578 F-element 5 3853 1.0 0.0 0.5 3.3 3871 chr2R 18111707 intergenic not near genes chr2R 18113642 intergenic not near genes chr2R 18115578 intergenic not near genes chr2R_5_18110001 chr2R_18110001 RAL-356 362 chr2R 18308283 18308314 chr2R 18308389 18308403 13 102 1.5 1.5 1.5 5.2 120 chr2R 18308283 intron sbb - chr2R 18308343 intron sbb - chr2R 18308403 intron sbb - chr2R_13_18305001 chr2R_18305001 RAL-356 363 chr2R 18376742 18376764 chr2R 18376818 18376833 5 74 2.0 4.0 3.0 1.2 91 chr2R 18376742 intergenic not near genes chr2R 18376788 intergenic not near genes chr2R 18376833 intergenic not near genes chr2R_5_18375001 chr2R_18375001 RAL-356 364 chr2R 18408284 18408297 chr2R 18408405 18408418 4 120 9.0 4.5 6.8 0.5 134 chr2R 18408284 exon GstE8 + chr2R 18408351 exon GstE8 + chr2R 18408418 exon GstE8 + chr2R_4_18405001 chr2R_18405001 RAL-356 365 chr2R 18408302 18408314 chr2R 18408403 18408426 9 111 4.5 3.5 4.0 1.8 124 chr2R 18408302 exon GstE8 + chr2R 18408364 exon GstE8 + chr2R 18408426 exon GstE8 + chr2R_9_18405001 chr2R_18405001 RAL-356 366 chr2R 18528197 18528222 chr2R 18528281 18528303 6 80 4.0 4.5 4.2 1.2 106 chr2R 18528197 intron CG10924 + chr2R 18528250 intron CG10924 + chr2R 18528303 intron CG10924 + chr2R_6_18525001 chr2R_18525001 RAL-356 367 chr2R 18575817 18575825 chr2R 18581988 18581994 3S18 4 6175 0.5 4.0 2.2 1.2 6177 chr2R 18575817 intron GEFmeso - chr2R 18578906 intron GEFmeso - chr2R 18581994 intron GEFmeso - chr2R_4_18575001 chr2R_18575001 RAL-356 368 chr2R 18590888 18590900 chr2R 18600019 18600028 roo 6 9140 3.0 2.0 2.5 1.7 9140 chr2R 18590888 intron GEFmeso - chr2R 18595458 intron GEFmeso - chr2R 18600028 intron GEFmeso - chr2R_6_18595001 chr2R_18595001 RAL-356 369 chr2R 18692900 18692918 chr2R 18692987 18693005 8 86 2.5 1.5 2.0 2.7 105 chr2R 18692900 intron Sik3 + chr2R 18692952 intron Sik3 + chr2R 18693005 intron Sik3 + chr2R_8_18690001 chr2R_18690001 RAL-356 370 chr2R 18715203 18715235 chr2R 18715282 18715300 13 72 1.0 6.0 3.5 2.9 97 chr2R 18715203 intergenic not near genes chr2R 18715252 intergenic not near genes chr2R 18715300 intergenic not near genes chr2R_13_18715001 chr2R_18715001 RAL-356 371 chr2R 19183349 19183374 chr2R 19183422 19183432 8 69 4.5 3.5 4.0 1.6 83 chr2R 19183349 intron hppy + chr2R 19183390 intron hppy + chr2R 19183432 intron hppy + chr2R_8_19180001 chr2R_19180001 RAL-356 372 chr2R 19588750 19588782 chr2R 19588828 19588841 5 69 1.5 2.5 2.0 1.7 91 chr2R 19588750 intron sm - chr2R 19588796 intron sm - chr2R 19588841 intron sm - chr2R_5_19585001 chr2R_19585001 RAL-356 373 chr2R 19724026 19724047 chr2R 19724104 19724112 6 75 2.5 1.5 2.0 2.0 86 chr2R 19724026 intergenic not near genes chr2R 19724069 intergenic not near genes chr2R 19724112 intergenic not near genes chr2R_6_19720001 chr2R_19720001 RAL-356 374 chr2R 19776607 19776624 chr2R 19779928 19779947 jockey 5 3316 8.0 2.5 5.2 0.8 3340 chr2R 19776607 intergenic not near genes chr2R 19778277 intergenic not near genes chr2R 19779947 intergenic not near genes chr2R_5_19775001 chr2R_19775001 RAL-356 375 chr2R 19831278 19831313 chr2R 19831354 19831373 8 71 1.5 5.0 3.2 1.9 95 chr2R 19831278 3` UTR Toll-7 + chr2R 19831326 3` UTR Toll-7 + chr2R 19831373 3` UTR Toll-7 + chr2R_8_19830001 chr2R_19830001 RAL-356 376 chr2R 19900489 19900503 chr2R 19900562 19900564 4 68 1.5 0.0 0.8 2.2 75 chr2R 19900489 intergenic not near genes chr2R 19900526 intergenic not near genes chr2R 19900564 intergenic not near genes chr2R_4_19900001 chr2R_19900001 RAL-356 377 chr2R 19914846 19914878 chr2R 19922258 19922268 mdg1 7 7406 5.0 3.0 4.0 1.4 7422 chr2R 19914846 intergenic not near genes chr2R 19918557 intergenic not near genes chr2R 19922268 intergenic not near genes chr2R_7_19915001 chr2R_19915001 RAL-356 378 chr2R 19957429 19957461 chr2R 19962631 19962656 copia 5 5194 3.0 1.5 2.2 1.6 5227 chr2R 19957429 intergenic CG44623 + chr2R 19960042 intergenic not near genes chr2R 19962656 intergenic not near genes chr2R_5_19960001 chr2R_19960001 RAL-356 379 chr2R 20031907 20031939 chr2R 20032003 20032035 7 89 2.0 2.0 2.0 2.3 128 chr2R 20031907 intergenic not near genes chr2R 20031971 intergenic not near genes chr2R 20032035 intergenic not near genes chr2R_7_20030001 chr2R_20030001 RAL-356 380 chr2R 20037462 20037496 chr2R 20037541 20037549 8 69 2.0 3.0 2.5 2.3 87 chr2R 20037462 intergenic not near genes chr2R 20037506 intergenic not near genes chr2R 20037549 intergenic not near genes chr2R_8_20035001 chr2R_20035001 RAL-356 381 chr2R 20199217 20199247 chr2R 20199293 20199324 4 75 1.0 3.0 2.0 1.3 107 chr2R 20199217 intergenic not near genes chr2R 20199270 intergenic not near genes chr2R 20199324 intergenic not near genes chr2R_4_20195001 chr2R_20195001 RAL-356 382 chr2R 20367385 20367407 chr2R 20367744 20367772 8 359 2.0 1.0 1.5 3.2 387 chr2R 20367385 intergenic not near genes chr2R 20367578 intergenic not near genes chr2R 20367772 intergenic not near genes chr2R_8_20365001 chr2R_20365001 RAL-356 383 chr2R 20678223 20678229 chr2R 20678344 20678355 4 124 0.5 3.0 1.8 1.4 132 chr2R 20678223 intergenic not near genes chr2R 20678289 intergenic not near genes chr2R 20678355 intergenic not near genes chr2R_4_20675001 chr2R_20675001 RAL-356 384 chr2R 20737405 20737420 chr2R 20737486 20737496 6 84 7.0 1.0 4.0 1.2 91 chr2R 20737405 intron dpr + chr2R 20737450 intron dpr + chr2R 20737496 intron dpr + chr2R_6_20735001 chr2R_20735001 RAL-356 385 chr2R 20739443 20739475 chr2R 20744210 20744229 F-element 5 4756 1.0 6.5 3.8 1.0 4786 chr2R 20739443 intron dpr + chr2R 20741836 intron dpr + chr2R 20744229 intron dpr + chr2R_5_20740001 chr2R_20740001 RAL-356 386 chr2R 21136896 21136917 chr2R 21136980 21136983 7 78 4.0 3.5 3.8 1.5 87 chr2R 21136896 intron Magi - chr2R 21136940 intron Magi - chr2R 21136983 intron Magi - chr2R_7_21135001 chr2R_21135001 RAL-356 387 chr2R 21217149 21217166 chr2R 21217550 21217563 4 405 4.5 2.0 3.2 1.0 414 chr2R 21217149 exon CG15661 - chr2R 21217356 5` UTR CG15661 - chr2R 21217563 intron CG15661 - chr2R_4_21215001 chr2R_21215001 RAL-356 388 chr2R 21363143 21363177 chr2R 21363240 21363251 4 81 0.0 0.0 0.0 4.0 108 chr2R 21363143 intron cv-2 - chr2R 21363197 intron cv-2 - chr2R 21363251 intron cv-2 - chr2R_4_21360001 chr2R_21360001 RAL-356 389 chr2R 21415286 21415297 chr2R 21415376 21415376 5 88 12.0 6.5 9.2 0.5 90 chr2R 21415286 intron Sdc - chr2R 21415331 intron Sdc - chr2R 21415376 intron Sdc - chr2R_5_21415001 chr2R_21415001 RAL-356 390 chr2R 21415301 21415321 chr2R 21415374 21415411 11 79 3.5 5.0 4.2 2.1 110 chr2R 21415301 intron Sdc - chr2R 21415356 intron Sdc - chr2R 21415411 intron Sdc - chr2R_11_21415001 chr2R_21415001 RAL-356 391 chr2R 21576903 21576932 chr2R 21577107 21577137 10 199 2.5 1.5 2.0 3.3 234 chr2R 21576903 intergenic not near genes chr2R 21577020 intergenic not near genes chr2R 21577137 intergenic not near genes chr2R_10_21575001 chr2R_21575001 RAL-356 392 chr2R 21700158 21700182 chr2R 21700244 21700258 6 80 6.0 3.5 4.8 1.0 100 chr2R 21700158 intron HmgZ - chr2R 21700208 intron HmgZ - chr2R 21700258 intron HmgZ - chr2R_6_21700001 chr2R_21700001 RAL-356 393 chr2R 21710936 21710969 chr2R 21711033 21711049 8 92 0.0 2.5 1.2 3.6 113 chr2R 21710936 intron,intron HmgD +,CG30403 - chr2R 21710992 intron,intron HmgD +,CG30403 - chr2R 21711049 intron,intron HmgD +,CG30403 - chr2R_8_21710001 chr2R_21710001 RAL-356 394 chr2R 21738302 21738309 chr2R 21747439 21747468 roo 4 9147 1.5 1.0 1.2 1.8 9166 chr2R 21738302 intergenic not near genes chr2R 21742885 intergenic not near genes chr2R 21747468 intergenic not near genes chr2R_4_21740001 chr2R_21740001 RAL-356 395 chr2R 21753091 21753096 chr2R 21753575 21753581 roo 4 484 7.5 5.5 6.5 0.5 490 chr2R 21753091 intergenic not near genes chr2R 21753336 intergenic not near genes chr2R 21753581 intergenic not near genes chr2R_4_21750001 chr2R_21750001 RAL-356 396 chr2R 21753101 21753117 chr2R 21753573 21753587 roo 5 471 4.0 4.0 4.0 1.0 486 chr2R 21753101 intergenic not near genes chr2R 21753344 intergenic not near genes chr2R 21753587 intergenic not near genes chr2R_5_21750001 chr2R_21750001 RAL-356 397 chr2R 21786423 21786453 chr2R 21786524 21786556 7 99 7.0 4.5 5.8 1.0 133 chr2R 21786423 intergenic not near genes chr2R 21786490 intergenic not near genes chr2R 21786556 intergenic not near genes chr2R_7_21785001 chr2R_21785001 RAL-356 398 chr2R 21886131 21886165 chr2R 21886208 21886232 6 72 1.5 0.0 0.8 3.3 101 chr2R 21886131 intron Fili + chr2R 21886182 intron Fili + chr2R 21886232 intron Fili + chr2R_6_21885001 chr2R_21885001 RAL-356 399 chr2R 21890766 21890771 chr2R 21890819 21890850 4 73 0.0 1.5 0.8 2.2 84 chr2R 21890766 intron Fili + chr2R 21890808 intron Fili + chr2R 21890850 intron Fili + chr2R_4_21890001 chr2R_21890001 RAL-356 400 chr2R 21936037 21936049 chr2R 21936482 21936515 5 453 2.0 1.5 1.8 1.8 478 chr2R 21936037 intron,exon Fili +,CG43742 - chr2R 21936276 intron,intron Fili +,CG43742 - chr2R 21936515 intron,intron Fili +,CG43742 - chr2R_5_21935001 chr2R_21935001 RAL-356 401 chr2R 22077960 22077989 chr2R 22078046 22078063 4 83 0.5 3.0 1.8 1.4 103 chr2R 22077960 3` UTR GlcT-1 + chr2R 22078012 3` UTR GlcT-1 + chr2R 22078063 3` UTR GlcT-1 + chr2R_4_22075001 chr2R_22075001 RAL-356 402 chr2R 22135451 22135467 chr2R 22135550 22135562 7 101 2.5 3.0 2.8 1.8 111 chr2R 22135451 intergenic not near genes chr2R 22135506 intergenic not near genes chr2R 22135562 intergenic not near genes chr2R_7_22135001 chr2R_22135001 RAL-356 403 chr2R 22185690 22185706 chr2R 22185772 22185788 4 82 1.0 0.0 0.5 2.7 98 chr2R 22185690 3` UTR MED16 + chr2R 22185739 3` UTR MED16 + chr2R 22185788 3` UTR MED16 + chr2R_4_22185001 chr2R_22185001 RAL-356 404 chr2R 22349698 22349725 chr2R 22351477 22351498 jockey 8 1778 2.5 2.5 2.5 2.3 1800 chr2R 22349698 intron Liprin-gamma - chr2R 22350598 intron Liprin-gamma - chr2R 22351498 intron Liprin-gamma - chr2R_8_22350001 chr2R_22350001 RAL-356 405 chr2R 22360380 22360412 chr2R 22360813 22360828 jockey 6 427 2.0 4.0 3.0 1.5 448 chr2R 22360380 intron Liprin-gamma - chr2R 22360604 intron Liprin-gamma - chr2R 22360828 intron Liprin-gamma - chr2R_6_22360001 chr2R_22360001 RAL-356 406 chr2R 22460388 22460406 chr2R 22460460 22460484 7 73 1.0 0.5 0.8 3.9 96 chr2R 22460388 intron CG10384 + chr2R 22460436 intron CG10384 + chr2R 22460484 intron CG10384 + chr2R_7_22460001 chr2R_22460001 RAL-356 407 chr2R 22461820 22461847 chr2R 22461892 22461921 12 70 5.0 1.0 3.0 3.0 101 chr2R 22461820 intron CG10384 + chr2R 22461870 intron CG10384 + chr2R 22461921 intron CG10384 + chr2R_12_22460001 chr2R_22460001 RAL-356 408 chr2R 22499855 22499886 chr2R 22499931 22499947 9 67 0.5 4.5 2.5 2.6 92 chr2R 22499855 intron px - chr2R 22499901 intron px - chr2R 22499947 intron px - chr2R_9_22495001 chr2R_22495001 RAL-356 409 chr2R 22525755 22525775 chr2R 22529299 22529311 jockey 5 3545 1.5 1.0 1.2 2.3 3556 chr2R 22525755 intron px - chr2R 22527533 intron px - chr2R 22529311 intron px - chr2R_5_22525001 chr2R_22525001 RAL-356 410 chr2R 22774967 22775002 chr2R 22775381 22775399 jockey 8 408 3.5 2.0 2.8 2.1 432 chr2R 22774967 intron CG42260 - chr2R 22775183 intron CG42260 - chr2R 22775399 intron CG42260 - chr2R_8_22775001 chr2R_22775001 RAL-356 411 chr2R 22834904 22834917 chr2R 22837682 22837692 5 2775 5.5 25.5 15.5 0.3 2788 chr2R 22834904 intron CG12490 + chr2R 22836298 intron CG12490 + chr2R 22837692 intron CG9825 + chr2R_5_22835001 chr2R_22835001 RAL-356 412 chr2R 22912700 22912710 chr2R 22912791 22912797 8 98 2.5 5.0 3.8 1.7 97 chr2R 22912700 exon nahoda + chr2R 22912748 exon nahoda + chr2R 22912797 exon nahoda + chr2R_8_22910001 chr2R_22910001 RAL-356 413 chr2R 22925357 22925379 chr2R 22925441 22925475 7 81 2.5 3.0 2.8 1.8 118 chr2R 22925357 5` UTR CG42678 + chr2R 22925416 5` UTR CG42678 + chr2R 22925475 5` UTR CG42678 + chr2R_7_22925001 chr2R_22925001 RAL-356 414 chr2R 23156960 23156985 chr2R 23157039 23157042 7 74 6.5 1.5 4.0 1.4 82 chr2R 23156960 intron CG9899 + chr2R 23157001 intron CG9899 + chr2R 23157042 intron CG9899 + chr2R_7_23155001 chr2R_23155001 RAL-356 415 chr2R 23175059 23175063 chr2R 23175122 23175137 5 69 3.5 8.0 5.8 0.7 78 chr2R 23175059 intron CG34371 - chr2R 23175098 intron CG34371 - chr2R 23175137 intron CG34371 - chr2R_5_23175001 chr2R_23175001 RAL-356 416 chr2R 23343803 23343838 chr2R 23343984 23344020 13 173 2.5 4.0 3.2 3.1 217 chr2R 23343803 exon CG3502 - chr2R 23343912 exon CG3502 - chr2R 23344020 exon CG3502 - chr2R_13_23340001 chr2R_23340001 RAL-356 417 chr2R 23427759 23427793 chr2R 23427900 23427935 6 135 3.5 5.5 4.5 1.1 176 chr2R 23427759 intron CG9815 - chr2R 23427847 intron CG9815 - chr2R 23427935 intron CG9815 - chr2R_6_23425001 chr2R_23425001 RAL-356 418 chr2R 23663622 23663641 chr2R 23663701 23663732 11 88 3.5 3.0 3.2 2.6 110 chr2R 23663622 intron Pde8 + chr2R 23663677 intron Pde8 + chr2R 23663732 intron Pde8 + chr2R_11_23660001 chr2R_23660001 RAL-356 419 chr2R 23986345 23986535 chr2R 23986421 23986609 11 72 1.5 3.0 2.2 3.4 264 chr2R 23986345 exon Phm - chr2R 23986477 intron Phm - chr2R 23986609 intron Phm - chr2R_11_23985001 chr2R_23985001 RAL-356 420 chr2R 23987654 23987676 chr2R 23987733 23987755 5 76 3.5 1.0 2.2 1.6 101 chr2R 23987654 exon Phm - chr2R 23987704 intron Phm - chr2R 23987755 intron Phm - chr2R_5_23985001 chr2R_23985001 RAL-356 421 chr2R 23987677 23987681 chr2R 23987732 23987751 5 65 2.5 0.5 1.5 2.0 74 chr2R 23987677 intron Phm - chr2R 23987714 intron Phm - chr2R 23987751 intron Phm - chr2R_5_23985001 chr2R_23985001 RAL-356 422 chr2R 24031402 24031413 chr2R 24031468 24031497 4 74 0.5 0.5 0.5 2.7 95 chr2R 24031402 5` UTR CG30172 - chr2R 24031450 intergenic CG30172 -,Chi - chr2R 24031497 intergenic Chi -,CG30172 - chr2R_4_24030001 chr2R_24030001 RAL-356 423 chr2R 24177239 24177267 chr2R 24184721 24184751 412 6 7481 0.5 2.0 1.2 2.7 7512 chr2R 24177239 3` UTR Nop60B + chr2R 24180995 intron Nop60B + chr2R 24184751 3` UTR Nop60B + chr2R_6_24180001 chr2R_24180001 RAL-356 424 chr2R 24340387 24340415 chr2R 24340466 24340501 7 82 4.0 1.5 2.8 1.8 114 chr2R 24340387 intergenic not near genes chr2R 24340444 intergenic not near genes chr2R 24340501 intergenic not near genes chr2R_7_24340001 chr2R_24340001 RAL-356 425 chr2R 24353442 24353459 chr2R 24361790 24361821 roo 4 8354 3.0 6.0 4.5 0.7 8379 chr2R 24353442 intron,intron bs +,CR44811 - chr2R 24357632 intron,intron bs +,CR44811 - chr2R 24361821 intron,intron bs +,CR44811 - chr2R_4_24355001 chr2R_24355001 RAL-356 426 chr2R 24444276 24444308 chr2R 24444408 24444438 9 130 4.0 3.5 3.8 1.9 162 chr2R 24444276 intergenic not near genes chr2R 24444357 intergenic not near genes chr2R 24444438 intergenic not near genes chr2R_9_24440001 chr2R_24440001 RAL-356 427 chr2R 24592958 24592963 chr2R 24593049 24593056 4 92 9.5 4.0 6.8 0.5 98 chr2R 24592958 intron pio + chr2R 24593007 intron pio + chr2R 24593056 intron pio + chr2R_4_24590001 chr2R_24590001 RAL-356 428 chr2R 24592965 24592979 chr2R 24593041 24593058 6 81 5.0 3.5 4.2 1.2 93 chr2R 24592965 intron pio + chr2R 24593012 intron pio + chr2R 24593058 intron pio + chr2R_6_24590001 chr2R_24590001 RAL-356 429 chr2R 24633995 24634011 chr2R 24634076 24634076 6 75 9.0 4.5 6.8 0.8 81 chr2R 24633995 intron CG13594 - chr2R 24634036 intron CG13594 - chr2R 24634076 intron CG13594 - chr2R_6_24630001 chr2R_24630001 RAL-356 430 chr2R 24634013 24634025 chr2R 24634075 24634102 10 65 5.5 4.5 5.0 1.7 89 chr2R 24634013 intron CG13594 - chr2R 24634058 intron CG13594 - chr2R 24634102 intron CG13594 - chr2R_10_24630001 chr2R_24630001 RAL-356 431 chr2R 24687651 24687670 chr2R 24687720 24687731 13 71 2.5 5.0 3.8 2.7 80 chr2R 24687651 intergenic Mmp1 - chr2R 24687691 intergenic Mmp1 - chr2R 24687731 intergenic Mmp1 - chr2R_13_24685001 chr2R_24685001 RAL-356 432 chr2R 24719810 24719823 chr2R 24719906 24719911 8 99 5.0 3.5 4.2 1.5 101 chr2R 24719810 intron Mid1 - chr2R 24719860 intron Mid1 - chr2R 24719911 intron Mid1 - chr2R_8_24715001 chr2R_24715001 RAL-356 433 chr2R 24722368 24722385 chr2R 24722450 24722450 6 79 1.5 3.5 2.5 1.7 82 chr2R 24722368 intron Mid1 - chr2R 24722409 intron Mid1 - chr2R 24722450 intron Mid1 - chr2R_6_24720001 chr2R_24720001 RAL-356 434 chr2R 24727888 24727897 chr2R 24735392 24735403 mdg1 4 7506 7.0 5.0 6.0 0.6 7515 chr2R 24727888 intron Mid1 - chr2R 24731646 intron Mid1 - chr2R 24735403 intron Mid1 - chr2R_4_24730001 chr2R_24730001 RAL-356 435 chr2R 24727903 24727915 chr2R 24735390 24735404 mdg1 5 7494 4.0 4.5 4.2 1.0 7501 chr2R 24727903 intron Mid1 - chr2R 24731654 intron Mid1 - chr2R 24735404 intron Mid1 - chr2R_5_24730001 chr2R_24730001 RAL-356 436 chr2R 24763611 24763641 chr2R 24765586 24765614 G2 8 1965 4.0 5.0 4.5 1.5 2003 chr2R 24763611 exon CG3894 + chr2R 24764612 intron CG3894 + chr2R 24765614 exon CG3894 + chr2R_8_24760001 chr2R_24760001 RAL-356 437 chr2R 24805731 24805745 chr2R 24805806 24805827 7 77 2.5 2.0 2.2 2.2 96 chr2R 24805731 intergenic not near genes chr2R 24805779 intergenic not near genes chr2R 24805827 intergenic not near genes chr2R_7_24805001 chr2R_24805001 RAL-356 438 chr2R 24859846 24859868 chr2R 24859932 24859954 4 85 1.0 2.0 1.5 1.6 108 chr2R 24859846 5` UTR CR44829 + chr2R 24859900 5` UTR CR44829 + chr2R 24859954 5` UTR CR44829 + chr2R_4_24855001 chr2R_24855001 RAL-356 439 chr2R 24884064 24884069 chr2R 24884132 24884151 4 76 3.5 1.0 2.2 1.2 87 chr2R 24884064 intron NKAIN + chr2R 24884108 intron NKAIN + chr2R 24884151 intron NKAIN + chr2R_4_24880001 chr2R_24880001 RAL-356 440 chr2R 25004896 25004923 chr2R 25004973 25004976 15 73 3.0 3.5 3.2 3.6 80 chr2R 25004896 intron zip - chr2R 25004936 intron zip - chr2R 25004976 intron zip - chr2R_15_25000001 chr2R_25000001 RAL-356 441 chr2R 25014546 25014576 chr2R 25014618 25014627 10 68 1.0 2.0 1.5 4.0 81 chr2R 25014546 intron uzip + chr2R 25014586 intron uzip + chr2R 25014627 intron uzip + chr2R_10_25010001 chr2R_25010001 RAL-356 442 chr2R 25018348 25018376 chr2R 25018439 25018463 18 94 1.0 4.5 2.8 4.7 115 chr2R 25018348 intron uzip + chr2R 25018406 intron uzip + chr2R 25018463 intron uzip + chr2R_18_25015001 chr2R_25015001 RAL-356 443 chr2R 25101276 25101298 chr2R 25101378 25101383 9 96 1.5 3.0 2.2 2.8 107 chr2R 25101276 intron lov - chr2R 25101330 intron lov - chr2R 25101383 intron lov - chr2R_9_25100001 chr2R_25100001 RAL-356 444 chr2R 25181126 25181138 chr2R 25181202 25181214 4 80 0.0 1.5 0.8 2.2 88 chr2R 25181126 intergenic not near genes chr2R 25181170 intergenic not near genes chr2R 25181214 intergenic not near genes chr2R_4_25180001 chr2R_25180001 RAL-356 445 chr2R 25253446 25253477 chr2R 25253522 25253552 6 72 1.0 3.0 2.0 2.0 106 chr2R 25253446 intron,intron CG9380 -,CG30428 + chr2R 25253499 intron,intron CG9380 -,CG30428 + chr2R 25253552 intron,intron CG9380 -,CG30428 + chr2R_6_25250001 chr2R_25250001 RAL-356 446 chr3L 23855 23862 chr3L 23918 23927 4 62 41.0 29.0 35.0 0.1 72 chr3L 23855 5` UTR mthl8 + chr3L 23891 5` UTR mthl8 + chr3L 23927 5` UTR mthl8 + chr3L_4_20001 chr3L_20001 RAL-356 447 chr3L 68998 69016 chr3L 69068 69081 6 77 2.5 2.0 2.2 1.9 83 chr3L 68998 intergenic Lsp1gamma +,CR44510 + chr3L 69040 intergenic Lsp1gamma +,CR44510 + chr3L 69081 intergenic CR44510 +,Lsp1gamma + chr3L_6_65001 chr3L_65001 RAL-356 448 chr3L 93818 93822 chr3L 93876 93902 4 74 2.0 6.5 4.2 0.8 84 chr3L 93818 intergenic not near genes chr3L 93860 intergenic not near genes chr3L 93902 intergenic not near genes chr3L_4_90001 chr3L_90001 RAL-356 449 chr3L 106006 106026 chr3L 106129 106135 4 120 2.0 1.0 1.5 1.6 129 chr3L 106006 intergenic not near genes chr3L 106070 intergenic not near genes chr3L 106135 intergenic not near genes chr3L_4_105001 chr3L_105001 RAL-356 450 chr3L 110217 110235 chr3L 119383 119384 roo 5 9159 1.5 2.0 1.8 1.8 9167 chr3L 110217 intergenic not near genes chr3L 114800 intergenic not near genes chr3L 119384 intergenic not near genes chr3L_5_110001 chr3L_110001 RAL-356 451 chr3L 402687 402717 chr3L 409740 409750 297 12 7047 7.0 2.0 4.5 2.2 7063 chr3L 402687 intergenic not near genes chr3L 406218 intergenic not near genes chr3L 409750 intergenic not near genes chr3L_12_405001 chr3L_405001 RAL-356 452 chr3L 564964 564979 chr3L 565743 565770 4 782 4.0 2.0 3.0 1.0 806 chr3L 564964 intron hipk + chr3L 565367 intron hipk + chr3L 565770 intron hipk + chr3L_4_565001 chr3L_565001 RAL-356 453 chr3L 651388 651398 chr3L 651476 651486 4 88 6.0 3.5 4.8 0.7 98 chr3L 651388 intergenic Gale +,CG3402 - chr3L 651437 intergenic CG3402 -,Gale + chr3L 651486 intergenic CG3402 -,Gale + chr3L_4_650001 chr3L_650001 RAL-356 454 chr3L 651402 651420 chr3L 651475 651505 5 80 2.0 3.0 2.5 1.4 103 chr3L 651402 intergenic Gale +,CG3402 - chr3L 651454 intergenic CG3402 -,Gale + chr3L 651505 intergenic CG3402 -,Gale + chr3L_5_650001 chr3L_650001 RAL-356 455 chr3L 834272 834290 chr3L 834348 834366 4 70 2.0 3.5 2.8 1.1 94 chr3L 834272 exon CG42553 + chr3L 834319 exon CG42553 + chr3L 834366 intron CG42553 + chr3L_4_830001 chr3L_830001 RAL-356 456 chr3L 843722 843747 chr3L 843801 843805 6 74 4.5 0.5 2.5 1.7 83 chr3L 843722 intergenic Gr61a +,CG13889 + chr3L 843764 intergenic Gr61a +,CG13889 + chr3L 843805 intergenic Gr61a +,CG13889 + chr3L_6_840001 chr3L_840001 RAL-356 457 chr3L 858002 858032 chr3L 866483 866513 Tirant 6 8480 1.5 4.5 3.0 1.5 8511 chr3L 858002 intergenic not near genes chr3L 862258 intergenic not near genes chr3L 866513 5` UTR CG12502 + chr3L_6_860001 chr3L_860001 RAL-356 458 chr3L 875662 875688 chr3L 875744 875772 4 80 4.5 3.0 3.8 0.8 110 chr3L 875662 intron CG32479 + chr3L 875717 intron CG32479 + chr3L 875772 intron CG32479 + chr3L_4_875001 chr3L_875001 RAL-356 459 chr3L 925175 925210 chr3L 932600 932614 mdg1 7 7417 1.5 5.5 3.5 1.6 7439 chr3L 925175 intron Glut1 + chr3L 928894 intron Glut1 + chr3L 932614 intron Glut1 + chr3L_7_925001 chr3L_925001 RAL-356 460 chr3L 933919 933943 chr3L 934013 934027 4 93 1.5 1.5 1.5 1.6 108 chr3L 933919 intron Glut1 + chr3L 933973 intron Glut1 + chr3L 934027 intron Glut1 + chr3L_4_930001 chr3L_930001 RAL-356 461 chr3L 939774 939805 chr3L 940894 940907 jockey 7 1112 4.5 4.5 4.5 1.3 1133 chr3L 939774 intron Glut1 + chr3L 940340 intron Glut1 + chr3L 940907 intron Glut1 + chr3L_7_940001 chr3L_940001 RAL-356 462 chr3L 1003052 1003068 chr3L 1003129 1003145 4 77 4.0 3.5 3.8 0.8 93 chr3L 1003052 intron trio - chr3L 1003098 intron trio - chr3L 1003145 intron trio - chr3L_4_1000001 chr3L_1000001 RAL-356 463 chr3L 1109637 1109667 chr3L 1109725 1109727 7 77 4.0 2.5 3.2 1.7 90 chr3L 1109637 intergenic not near genes chr3L 1109682 intergenic not near genes chr3L 1109727 intergenic not near genes chr3L_7_1105001 chr3L_1105001 RAL-356 464 chr3L 1154139 1154161 chr3L 1163280 1163293 roo 5 9138 2.0 0.0 1.0 2.5 9154 chr3L 1154139 intron bab2 - chr3L 1158716 intron bab2 - chr3L 1163293 intron bab2 - chr3L_5_1155001 chr3L_1155001 RAL-356 465 chr3L 1219594 1219622 chr3L 1227327 1227337 412 6 7726 1.0 5.0 3.0 1.5 7743 chr3L 1219594 intron mwh + chr3L 1223466 intron mwh + chr3L 1227337 intron mwh + chr3L_6_1220001 chr3L_1220001 RAL-356 466 chr3L 1268152 1268180 chr3L 1268338 1268367 5 179 2.5 0.5 1.5 2.0 215 chr3L 1268152 intron CG9134 + chr3L 1268260 intron CG9134 + chr3L 1268367 intron CG9134 + chr3L_5_1265001 chr3L_1265001 RAL-356 467 chr3L 1310982 1310999 chr3L 1315847 1315875 16 4868 35.0 38.0 36.5 0.4 4893 chr3L 1310982 exon CG2469 + chr3L 1313428 intergenic CG9186 -,CG9153 + chr3L 1315875 exon CG9153 + chr3L_16_1310001 chr3L_1310001 RAL-356 468 chr3L 1347158 1347192 chr3L 1347243 1347252 8 77 2.0 6.0 4.0 1.6 94 chr3L 1347158 intron Ptp61F - chr3L 1347205 intron Ptp61F - chr3L 1347252 intron Ptp61F - chr3L_8_1345001 chr3L_1345001 RAL-356 469 chr3L 1385179 1385203 chr3L 1385263 1385291 5 87 2.5 0.5 1.5 2.0 112 chr3L 1385179 intron,intron Ptp61F -,ru + chr3L 1385235 intron,intron Ptp61F -,ru + chr3L 1385291 intron,intron Ptp61F -,ru + chr3L_5_1385001 chr3L_1385001 RAL-356 470 chr3L 1463417 1463449 chr3L 1463497 1463507 13 70 3.0 6.5 4.8 2.2 90 chr3L 1463417 intron Ptp61F - chr3L 1463462 intron Ptp61F - chr3L 1463507 intron Ptp61F - chr3L_13_1460001 chr3L_1460001 RAL-356 471 chr3L 1505998 1506033 chr3L 1513595 1513630 17.6 9 7592 3.5 4.0 3.8 1.9 7632 chr3L 1505998 intron,intron Psa +,cue - chr3L 1509814 intron,intron Psa +,cue - chr3L 1513630 intron,intron Psa +,cue - chr3L_9_1505001 chr3L_1505001 RAL-356 472 chr3L 1922452 1922465 chr3L 1922530 1922543 5 77 9.0 6.5 7.8 0.6 91 chr3L 1922452 intron Dbx + chr3L 1922498 intron Dbx + chr3L 1922543 intron Dbx + chr3L_5_1920001 chr3L_1920001 RAL-356 473 chr3L 1975751 1975773 chr3L 1975818 1975840 4 66 3.0 1.0 2.0 1.3 89 chr3L 1975751 intergenic not near genes chr3L 1975796 intergenic not near genes chr3L 1975840 intergenic not near genes chr3L_4_1975001 chr3L_1975001 RAL-356 474 chr3L 1988850 1988874 chr3L 1989018 1989052 10 169 5.0 6.0 5.5 1.5 202 chr3L 1988850 intergenic not near genes chr3L 1988951 intergenic not near genes chr3L 1989052 intergenic not near genes chr3L_10_1985001 chr3L_1985001 RAL-356 475 chr3L 2023922 2023944 chr3L 2024006 2024009 5 74 2.0 7.5 4.8 0.9 87 chr3L 2023922 intergenic not near genes chr3L 2023966 intergenic not near genes chr3L 2024009 intergenic not near genes chr3L_5_2020001 chr3L_2020001 RAL-356 476 chr3L 2139213 2139233 chr3L 2139294 2139313 4 78 3.5 4.5 4.0 0.8 100 chr3L 2139213 intron zormin - chr3L 2139263 intron zormin - chr3L 2139313 intron zormin - chr3L_4_2135001 chr3L_2135001 RAL-356 477 chr3L 2317567 2317596 chr3L 2319381 2319404 7 1809 1.0 4.5 2.8 1.8 1837 chr3L 2317567 3` UTR CR45427 - chr3L 2318486 intergenic not near genes chr3L 2319404 3` UTR CR45426 - chr3L_7_2315001 chr3L_2315001 RAL-356 478 chr3L 2331607 2331614 chr3L 2331664 2331668 4 62 1.5 3.5 2.5 1.1 61 chr3L 2331607 intron MsR1 + chr3L 2331638 intron MsR1 + chr3L 2331668 intron MsR1 + chr3L_4_2330001 chr3L_2330001 RAL-356 479 chr3L 2447527 2447536 chr3L 2456659 2456692 roo 6 9150 3.0 5.5 4.2 1.2 9165 chr3L 2447527 intron CG45186 + chr3L 2452110 intron CG45186 + chr3L 2456692 intron CG45186 + chr3L_6_2450001 chr3L_2450001 RAL-356 480 chr3L 2479471 2479485 chr3L 2479549 2479552 4 81 0.0 4.0 2.0 1.3 81 chr3L 2479471 intron CG45186 + chr3L 2479512 intron CG45186 + chr3L 2479552 intron CG45186 + chr3L_4_2475001 chr3L_2475001 RAL-356 481 chr3L 2533660 2533681 chr3L 2533732 2533735 6 63 6.5 6.0 6.2 0.8 75 chr3L 2533660 intron Spn - chr3L 2533698 intron Spn - chr3L 2533735 intron Spn - chr3L_6_2530001 chr3L_2530001 RAL-356 482 chr3L 2624392 2624420 chr3L 2624531 2624562 4 137 0.0 3.0 1.5 1.6 170 chr3L 2624392 intron Pxn - chr3L 2624477 intron Pxn - chr3L 2624562 intron Pxn - chr3L_4_2620001 chr3L_2620001 RAL-356 483 chr3L 2705905 2705931 chr3L 2705979 2705984 9 74 3.0 3.5 3.2 2.1 79 chr3L 2705905 intron Fife - chr3L 2705944 intron Fife - chr3L 2705984 intron Fife - chr3L_9_2705001 chr3L_2705001 RAL-356 484 chr3L 2795722 2795746 chr3L 2795845 2795869 6 121 0.5 1.0 0.8 3.3 147 chr3L 2795722 intron CG43444 - chr3L 2795796 intron CG43444 - chr3L 2795869 intron CG43444 - chr3L_6_2795001 chr3L_2795001 RAL-356 485 chr3L 2964480 2964495 chr3L 2964646 2964648 7 163 2.0 3.0 2.5 2.0 168 chr3L 2964480 intergenic not near genes chr3L 2964564 intergenic not near genes chr3L 2964648 intergenic not near genes chr3L_7_2960001 chr3L_2960001 RAL-356 486 chr3L 2989562 2989584 chr3L 2989641 2989672 5 84 3.0 0.5 1.8 1.8 110 chr3L 2989562 intergenic not near genes chr3L 2989617 intergenic not near genes chr3L 2989672 intergenic not near genes chr3L_5_2985001 chr3L_2985001 RAL-356 487 chr3L 3259617 3259832 chr3L 3259712 3259919 18 91 0.0 5.5 2.8 4.7 302 chr3L 3259617 intron ckd + chr3L 3259768 intron ckd + chr3L 3259919 intron ckd + chr3L_18_3255001 chr3L_3255001 RAL-356 488 chr3L 3281453 3281476 chr3L 3281932 3281958 Doc 11 485 3.0 9.5 6.2 1.5 505 chr3L 3281453 intron CG12017 + chr3L 3281706 intron CG12017 + chr3L 3281958 intron CG12017 + chr3L_11_3280001 chr3L_3280001 RAL-356 489 chr3L 3298612 3298622 chr3L 3302255 3302274 5 3641 21.0 25.5 23.2 0.2 3662 chr3L 3298612 exon CG12009 + chr3L 3300443 intron CG14968 - chr3L 3302274 intron CG14968 - chr3L_5_3300001 chr3L_3300001 RAL-356 490 chr3L 3310299 3310319 chr3L 3310376 3310395 4 68 1.5 2.0 1.8 1.4 96 chr3L 3310299 intron ZnT63C + chr3L 3310347 intron ZnT63C + chr3L 3310395 intron ZnT63C + chr3L_4_3310001 chr3L_3310001 RAL-356 491 chr3L 3475074 3475110 chr3L 3475518 3475554 jockey 10 438 2.0 5.5 3.8 2.1 480 chr3L 3475074 intron CG42324 + chr3L 3475314 intron CG42324 + chr3L 3475554 intron CG42324 + chr3L_10_3475001 chr3L_3475001 RAL-356 492 chr3L 3484302 3484312 chr3L 3484379 3484388 5 79 2.5 3.0 2.8 1.3 86 chr3L 3484302 intron,exon CG42324 +,CG43074 - chr3L 3484345 intron,exon CG42324 +,CG43074 - chr3L 3484388 intron,intron CG42324 +,CG43074 - chr3L_5_3480001 chr3L_3480001 RAL-356 493 chr3L 3589302 3589319 chr3L 3589383 3589395 5 83 0.0 3.0 1.5 2.0 93 chr3L 3589302 intron Eip63E + chr3L 3589348 intron Eip63E + chr3L 3589395 intron Eip63E + chr3L_5_3585001 chr3L_3585001 RAL-356 494 chr3L 3601297 3601330 chr3L 3606608 3606618 copia 7 5307 2.0 3.0 2.5 2.0 5321 chr3L 3601297 intron Eip63E + chr3L 3603958 intron Eip63E + chr3L 3606618 intron Eip63E + chr3L_7_3600001 chr3L_3600001 RAL-356 495 chr3L 3890980 3890993 chr3L 3891042 3891054 4 69 1.0 1.0 1.0 2.0 74 chr3L 3890980 intergenic not near genes chr3L 3891017 intergenic not near genes chr3L 3891054 intergenic not near genes chr3L_4_3890001 chr3L_3890001 RAL-356 496 chr3L 4342414 4342437 chr3L 4342489 4342501 8 70 3.5 4.5 4.0 1.6 87 chr3L 4342414 intron Cip4 - chr3L 4342458 intron Cip4 - chr3L 4342501 intron Cip4 - chr3L_8_4340001 chr3L_4340001 RAL-356 497 chr3L 4364204 4364227 chr3L 4364292 4364315 5 85 0.5 0.5 0.5 3.3 111 chr3L 4364204 intergenic Cip4 -,mRpS6 + chr3L 4364260 intergenic Cip4 -,mRpS6 + chr3L 4364315 intergenic Cip4 -,mRpS6 + chr3L_5_4360001 chr3L_4360001 RAL-356 498 chr3L 4519420 4519453 chr3L 4519497 4519511 7 71 3.5 1.5 2.5 2.0 91 chr3L 4519420 intron Tie - chr3L 4519466 intron Tie - chr3L 4519511 intron Tie - chr3L_7_4515001 chr3L_4515001 RAL-356 499 chr3L 4629621 4629639 chr3L 4629789 4629809 4 170 0.0 4.5 2.2 1.2 188 chr3L 4629621 3` UTR axo - chr3L 4629715 3` UTR axo - chr3L 4629809 3` UTR axo - chr3L_4_4625001 chr3L_4625001 RAL-356 500 chr3L 4668388 4668406 chr3L 4668536 4668554 5 142 2.0 5.5 3.8 1.0 166 chr3L 4668388 intron axo - chr3L 4668471 intron axo - chr3L 4668554 intron axo - chr3L_5_4665001 chr3L_4665001 RAL-356 501 chr3L 4858330 4858336 chr3L 4858401 4858419 5 79 4.0 8.5 6.2 0.7 89 chr3L 4858330 intergenic not near genes chr3L 4858374 intergenic not near genes chr3L 4858419 intergenic not near genes chr3L_5_4855001 chr3L_4855001 RAL-356 502 chr3L 5030772 5030797 chr3L 5030848 5030873 6 73 2.5 5.0 3.8 1.2 101 chr3L 5030772 intron Con - chr3L 5030822 intron Con - chr3L 5030873 intron Con - chr3L_6_5030001 chr3L_5030001 RAL-356 503 chr3L 5034167 5034191 chr3L 5043308 5043321 roo 9 9140 0.5 1.5 1.0 4.5 9154 chr3L 5034167 intron Con - chr3L 5038744 intron Con - chr3L 5043321 intron Con - chr3L_9_5035001 chr3L_5035001 RAL-356 504 chr3L 5045461 5045489 chr3L 5050238 5050264 Doc 6 4774 0.0 2.0 1.0 3.0 4803 chr3L 5045461 intron Con - chr3L 5047862 intron Con - chr3L 5050264 intron Con - chr3L_6_5045001 chr3L_5045001 RAL-356 505 chr3L 5381831 5381847 chr3L 5381909 5381919 5 75 6.0 5.0 5.5 0.8 88 chr3L 5381831 exon Ir64a - chr3L 5381875 exon Ir64a - chr3L 5381919 exon Ir64a - chr3L_5_5380001 chr3L_5380001 RAL-356 506 chr3L 5381851 5381862 chr3L 5381908 5381918 7 63 3.0 5.0 4.0 1.4 67 chr3L 5381851 exon Ir64a - chr3L 5381884 exon Ir64a - chr3L 5381918 exon Ir64a - chr3L_7_5380001 chr3L_5380001 RAL-356 507 chr3L 5476189 5476210 chr3L 5476262 5476291 5 72 1.5 6.5 4.0 1.0 102 chr3L 5476189 intergenic not near genes chr3L 5476240 intergenic not near genes chr3L 5476291 intergenic not near genes chr3L_5_5475001 chr3L_5475001 RAL-356 508 chr3L 5483035 5483123 chr3L 5483171 5483270 6 118 20.0 26.5 23.2 0.2 235 chr3L 5483035 exon CG4835 + chr3L 5483152 exon CG4835 + chr3L 5483270 exon CG4835 + chr3L_6_5480001 chr3L_5480001 RAL-356 509 chr3L 5498416 5498424 chr3L 5498489 5498489 4 72 0.5 5.0 2.8 1.1 73 chr3L 5498416 exon blanks - chr3L 5498452 exon blanks - chr3L 5498489 exon blanks - chr3L_4_5495001 chr3L_5495001 RAL-356 510 chr3L 5918926 5918936 chr3L 5918986 5918997 7 68 2.0 4.5 3.2 1.7 71 chr3L 5918926 intron,5` UTR CG10483 -,CR45167 + chr3L 5918962 intron,5` UTR CG10483 -,CR45167 + chr3L 5918997 intron,5` UTR CG10483 -,CR45167 + chr3L_7_5915001 chr3L_5915001 RAL-356 511 chr3L 5926315 5926334 chr3L 5926503 5926514 BS 6 182 7.0 5.0 6.0 0.9 199 chr3L 5926315 intron Vap-33B + chr3L 5926414 intron Vap-33B + chr3L 5926514 intron Vap-33B + chr3L_6_5925001 chr3L_5925001 RAL-356 512 chr3L 5926338 5926347 chr3L 5926502 5926511 BS 5 172 5.5 4.0 4.8 0.9 173 chr3L 5926338 intron Vap-33B + chr3L 5926424 intron Vap-33B + chr3L 5926511 intron Vap-33B + chr3L_5_5925001 chr3L_5925001 RAL-356 513 chr3L 5983937 5983957 chr3L 5984050 5984068 5 111 0.5 1.0 0.8 2.8 131 chr3L 5983937 intergenic CR45439 -,CR45440 - chr3L 5984002 intergenic CR45440 -,CR45439 - chr3L 5984068 intergenic CR45440 -,CR45439 - chr3L_5_5980001 chr3L_5980001 RAL-356 514 chr3L 6001691 6001701 chr3L 6004377 6004383 jockey 4 2689 3.0 1.5 2.2 1.2 2692 chr3L 6001691 intron PVRAP + chr3L 6003037 intron PVRAP + chr3L 6004383 intron PVRAP + chr3L_4_6000001 chr3L_6000001 RAL-356 515 chr3L 6022242 6022271 chr3L 6022322 6022348 4 80 2.5 3.0 2.8 1.1 106 chr3L 6022242 intron PVRAP + chr3L 6022295 intron PVRAP + chr3L 6022348 intron PVRAP + chr3L_4_6020001 chr3L_6020001 RAL-356 516 chr3L 6040300 6040305 chr3L 6040355 6040382 5 67 0.5 0.5 0.5 3.3 82 chr3L 6040300 intergenic Jon65Aiv + chr3L 6040341 intergenic Jon65Aiv + chr3L 6040382 intergenic Jon65Aiv + chr3L_5_6040001 chr3L_6040001 RAL-356 517 chr3L 6040371 6040391 chr3L 6042726 6042747 Doc 4 2356 0.5 1.0 0.8 2.2 2376 chr3L 6040371 intergenic Jon65Aiv + chr3L 6041559 intergenic not near genes chr3L 6042747 intergenic not near genes chr3L_4_6040001 chr3L_6040001 RAL-356 518 chr3L 6220914 6220948 chr3L 6230066 6230092 roo 6 9146 1.5 7.0 4.2 1.2 9178 chr3L 6220914 5` UTR pncr008:3L + chr3L 6225503 intergenic not near genes chr3L 6230092 intergenic not near genes chr3L_6_6225001 chr3L_6225001 RAL-356 519 chr3L 6500548 6500569 chr3L 6500661 6500693 9 117 2.0 2.5 2.2 2.8 145 chr3L 6500548 intron sfl + chr3L 6500620 intron sfl + chr3L 6500693 intron sfl + chr3L_9_6500001 chr3L_6500001 RAL-356 520 chr3L 6504320 6504348 chr3L 6504411 6504434 11 94 6.5 6.0 6.2 1.5 114 chr3L 6504320 intron sfl + chr3L 6504377 intron sfl + chr3L 6504434 intron sfl + chr3L_11_6500001 chr3L_6500001 RAL-356 521 chr3L 6652081 6652106 chr3L 6652159 6652172 12 70 6.0 4.5 5.2 1.9 91 chr3L 6652081 intergenic not near genes chr3L 6652126 intergenic not near genes chr3L 6652172 intergenic not near genes chr3L_12_6650001 chr3L_6650001 RAL-356 522 chr3L 6786897 6786925 chr3L 6786983 6787002 6 85 3.0 2.0 2.5 1.7 105 chr3L 6786897 3` UTR CR45759 - chr3L 6786950 3` UTR CR45759 - chr3L 6787002 3` UTR CR45759 - chr3L_6_6785001 chr3L_6785001 RAL-356 523 chr3L 6855920 6855951 chr3L 6860703 6860715 Doc 7 4776 1.0 1.5 1.2 3.2 4795 chr3L 6855920 intergenic not near genes chr3L 6858318 intergenic not near genes chr3L 6860715 intergenic not near genes chr3L_7_6855001 chr3L_6855001 RAL-356 524 chr3L 6887515 6887548 chr3L 6895007 6895037 roo 8 7486 1.5 2.5 2.0 2.7 7522 chr3L 6887515 intergenic not near genes chr3L 6891276 intergenic not near genes chr3L 6895037 intergenic not near genes chr3L_8_6890001 chr3L_6890001 RAL-356 525 chr3L 6974509 6974524 chr3L 6974591 6974625 4 94 0.0 4.5 2.2 1.2 116 chr3L 6974509 intron Galphai - chr3L 6974567 intron Galphai - chr3L 6974625 intron Galphai - chr3L_4_6970001 chr3L_6970001 RAL-356 526 chr3L 7033194 7033204 chr3L 7033255 7033284 8 77 3.5 4.0 3.8 1.7 90 chr3L 7033194 intron Mp + chr3L 7033239 intron Mp + chr3L 7033284 intron Mp + chr3L_8_7030001 chr3L_7030001 RAL-356 527 chr3L 7244931 7244965 chr3L 7245022 7245056 7 81 5.0 1.5 3.2 1.7 125 chr3L 7244931 exon mei-P22 + chr3L 7244994 exon mei-P22 + chr3L 7245056 exon mei-P22 + chr3L_7_7240001 chr3L_7240001 RAL-356 528 chr3L 7285451 7285464 chr3L 7285529 7285539 4 77 2.5 2.0 2.2 1.2 88 chr3L 7285451 intron unc-13-4A - chr3L 7285495 intron unc-13-4A - chr3L 7285539 intron unc-13-4A - chr3L_4_7285001 chr3L_7285001 RAL-356 529 chr3L 7285472 7285478 chr3L 7285527 7285538 4 64 2.0 2.0 2.0 1.3 66 chr3L 7285472 intron unc-13-4A - chr3L 7285505 intron unc-13-4A - chr3L 7285538 intron unc-13-4A - chr3L_4_7285001 chr3L_7285001 RAL-356 530 chr3L 7572280 7572314 chr3L 7572367 7572395 12 80 2.5 2.0 2.2 3.8 115 chr3L 7572280 intergenic not near genes chr3L 7572338 intergenic not near genes chr3L 7572395 intergenic not near genes chr3L_12_7570001 chr3L_7570001 RAL-356 531 chr3L 7732957 7732963 chr3L 7733139 7733146 5 183 2.5 1.0 1.8 1.8 189 chr3L 7732957 intron CG32373 + chr3L 7733052 intron CG32373 + chr3L 7733146 intron CG32373 + chr3L_5_7730001 chr3L_7730001 RAL-356 532 chr3L 7749470 7749472 chr3L 11777678 11777678 5 4028207 3.0 15.5 9.2 0.5 4028208 chr3L 7749470 intron,3` UTR CG32373 +,CG13685 + chr3L 9763574 5` UTR CG8177 + chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_5_9760001 chr3L_9760001 RAL-356 533 chr3L 7781894 7781900 chr3L 7781960 7781989 5 82 0.0 5.0 2.5 1.4 95 chr3L 7781894 intron CG32369 - chr3L 7781942 intron CG32369 - chr3L 7781989 intron CG32369 - chr3L_5_7780001 chr3L_7780001 RAL-356 534 chr3L 7814704 7814730 chr3L 7814789 7814806 4 80 1.0 2.0 1.5 1.6 102 chr3L 7814704 3` UTR Pdp1 - chr3L 7814755 3` UTR Pdp1 - chr3L 7814806 3` UTR Pdp1 - chr3L_4_7810001 chr3L_7810001 RAL-356 535 chr3L 7835418 7835448 chr3L 7835496 7835517 9 74 3.5 5.5 4.5 1.6 99 chr3L 7835418 intron Pdp1 - chr3L 7835468 intron Pdp1 - chr3L 7835517 intron Pdp1 - chr3L_9_7835001 chr3L_7835001 RAL-356 536 chr3L 7883751 7883756 chr3L 7883908 7883911 4 156 7.0 0.0 3.5 0.9 160 chr3L 7883751 intron CG32365 + chr3L 7883831 intron CG32365 + chr3L 7883911 intron CG32365 + chr3L_4_7880001 chr3L_7880001 RAL-356 537 chr3L 7883757 7883776 chr3L 7883906 7883914 7 149 3.5 0.0 1.8 2.5 157 chr3L 7883757 intron CG32365 + chr3L 7883836 intron CG32365 + chr3L 7883914 intron CG32365 + chr3L_7_7880001 chr3L_7880001 RAL-356 538 chr3L 7886518 7886546 chr3L 7889030 7889064 Stalker4 7 2514 1.5 1.0 1.2 3.2 2546 chr3L 7886518 intron CG32365 + chr3L 7887791 intron CG32365 + chr3L 7889064 intron CG32365 + chr3L_7_7885001 chr3L_7885001 RAL-356 539 chr3L 7985366 7985394 chr3L 7987690 7987708 NOF 7 2314 3.0 2.0 2.5 2.0 2342 chr3L 7985366 intron nmo + chr3L 7986537 intron nmo + chr3L 7987708 intron nmo + chr3L_7_7985001 chr3L_7985001 RAL-356 540 chr3L 8208128 8208157 chr3L 8208258 8208288 7 126 4.5 3.0 3.8 1.5 160 chr3L 8208128 intergenic not near genes chr3L 8208208 intergenic not near genes chr3L 8208288 intergenic not near genes chr3L_7_8205001 chr3L_8205001 RAL-356 541 chr3L 8248327 8248342 chr3L 8248402 8248426 4 77 0.5 2.0 1.2 1.8 99 chr3L 8248327 intron Dscam4 + chr3L 8248376 intron Dscam4 + chr3L 8248426 intron Dscam4 + chr3L_4_8245001 chr3L_8245001 RAL-356 542 chr3L 8295799 8295828 chr3L 8295950 8295976 9 151 4.5 2.5 3.5 2.0 177 chr3L 8295799 intergenic CG7201 - chr3L 8295888 intergenic not near genes chr3L 8295976 intergenic not near genes chr3L_9_8295001 chr3L_8295001 RAL-356 543 chr3L 8584921 8584949 chr3L 8585015 8585016 5 88 1.0 1.5 1.2 2.3 95 chr3L 8584921 intron CG43078 + chr3L 8584968 intron CG43078 + chr3L 8585016 intron CG43078 + chr3L_5_8580001 chr3L_8580001 RAL-356 544 chr3L 8690610 8690633 chr3L 8690853 8690865 9 241 5.0 8.5 6.8 1.2 255 chr3L 8690610 intergenic not near genes chr3L 8690738 intergenic not near genes chr3L 8690865 intergenic not near genes chr3L_9_8690001 chr3L_8690001 RAL-356 545 chr3L 8710424 8710447 chr3L 8710554 8710561 9 125 6.5 1.5 4.0 1.8 137 chr3L 8710424 intergenic not near genes chr3L 8710492 intergenic not near genes chr3L 8710561 intergenic not near genes chr3L_9_8710001 chr3L_8710001 RAL-356 546 chr3L 8922890 8922916 chr3L 8922967 8922992 7 75 6.0 4.0 5.0 1.2 102 chr3L 8922890 intron Tsp66E + chr3L 8922941 intron Tsp66E + chr3L 8922992 intron Tsp66E + chr3L_7_8920001 chr3L_8920001 RAL-356 547 chr3L 9003951 9003963 chr3L 9004034 9004040 4 82 2.0 2.0 2.0 1.3 89 chr3L 9003951 intergenic not near genes chr3L 9003996 intergenic not near genes chr3L 9004040 intergenic not near genes chr3L_4_9000001 chr3L_9000001 RAL-356 548 chr3L 9010634 9010659 chr3L 9010702 9010738 14 70 5.0 5.0 5.0 2.3 104 chr3L 9010634 intergenic not near genes chr3L 9010686 intergenic not near genes chr3L 9010738 intergenic not near genes chr3L_14_9010001 chr3L_9010001 RAL-356 549 chr3L 9028056 9028085 chr3L 9028158 9028169 7 96 2.0 3.5 2.8 1.8 113 chr3L 9028056 intergenic not near genes chr3L 9028112 intergenic not near genes chr3L 9028169 intergenic not near genes chr3L_7_9025001 chr3L_9025001 RAL-356 550 chr3L 9076951 9076954 chr3L 9084495 9084514 412 4 7548 4.0 3.0 3.5 0.9 7563 chr3L 9076951 exon Tequila + chr3L 9080732 intron Tequila + chr3L 9084514 exon Tequila + chr3L_4_9080001 chr3L_9080001 RAL-356 551 chr3L 9219267 9219281 chr3L 9219911 9219927 jockey 6 652 3.0 2.0 2.5 1.7 660 chr3L 9219267 intergenic not near genes chr3L 9219597 intergenic not near genes chr3L 9219927 intergenic not near genes chr3L_6_9215001 chr3L_9215001 RAL-356 552 chr3L 9270620 9270635 chr3L 9278373 9278379 roo 4 7748 4.5 4.0 4.2 0.8 7759 chr3L 9270620 intron GluRIB + chr3L 9274500 intron GluRIB + chr3L 9278379 intron GluRIB + chr3L_4_9270001 chr3L_9270001 RAL-356 553 chr3L 9312260 9312264 chr3L 9313515 9313519 4 1256 0.0 1.5 0.8 2.2 1259 chr3L 9312260 intergenic not near genes chr3L 9312890 intergenic not near genes chr3L 9313519 intergenic not near genes chr3L_4_9310001 chr3L_9310001 RAL-356 554 chr3L 9313026 9313026 chr3L 11777678 11777678 4 2464652 0.0 15.5 7.8 0.5 2464652 chr3L 9313026 intergenic not near genes chr3L 10545352 intron A2bp1 + chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_4_10545001 chr3L_10545001 RAL-356 555 chr3L 9507818 9507840 chr3L 9507891 9507920 9 75 2.0 2.0 2.0 3.0 102 chr3L 9507818 exon CG3408 - chr3L 9507869 exon CG3408 - chr3L 9507920 exon CG3408 - chr3L_9_9505001 chr3L_9505001 RAL-356 556 chr3L 9646475 9646492 chr3L 9646595 9646599 5 119 6.0 0.0 3.0 1.2 124 chr3L 9646475 intron,intron fry -,CG33696 + chr3L 9646537 intron,intron fry -,CG33696 + chr3L 9646599 intron,intron fry -,CG33696 + chr3L_5_9645001 chr3L_9645001 RAL-356 557 chr3L 9684201 9684220 chr3L 9684300 9684306 5 95 2.5 1.5 2.0 1.7 105 chr3L 9684201 3` UTR CG6767 - chr3L 9684254 3` UTR CG6767 - chr3L 9684306 3` UTR CG6767 - chr3L_5_9680001 chr3L_9680001 RAL-356 558 chr3L 9878607 9878627 chr3L 9878686 9878701 5 76 2.5 2.0 2.2 1.6 94 chr3L 9878607 intergenic CG34382 + chr3L 9878654 intergenic CG34382 + chr3L 9878701 intergenic CG34382 + chr3L_5_9875001 chr3L_9875001 RAL-356 559 chr3L 9929674 9929701 chr3L 9938453 9938462 roo 7 8770 2.0 3.5 2.8 1.8 8788 chr3L 9929674 intron CG34356 + chr3L 9934068 intron CG34356 + chr3L 9938462 intron CG34356 + chr3L_7_9930001 chr3L_9930001 RAL-356 560 chr3L 10007189 10007206 chr3L 10007292 10007309 4 101 2.5 2.5 2.5 1.1 120 chr3L 10007189 intron dpr6 + chr3L 10007249 intron dpr6 + chr3L 10007309 intron dpr6 + chr3L_4_10005001 chr3L_10005001 RAL-356 561 chr3L 10035231 10035246 chr3L 10035300 10035327 6 77 6.0 2.5 4.2 1.2 96 chr3L 10035231 intron dpr6 + chr3L 10035279 intron dpr6 + chr3L 10035327 intron dpr6 + chr3L_6_10035001 chr3L_10035001 RAL-356 562 chr3L 10308749 10308773 chr3L 10308824 10308839 10 74 4.5 2.5 3.5 2.2 90 chr3L 10308749 intergenic not near genes chr3L 10308794 intergenic not near genes chr3L 10308839 intergenic not near genes chr3L_10_10305001 chr3L_10305001 RAL-356 563 chr3L 10414946 10414977 chr3L 10417318 10417348 Doc 10 2364 1.5 1.0 1.2 4.5 2402 chr3L 10414946 intergenic CG12362 + chr3L 10416147 intergenic not near genes chr3L 10417348 intergenic not near genes chr3L_10_10415001 chr3L_10415001 RAL-356 564 chr3L 10455806 10455833 chr3L 10455931 10455950 7 116 1.0 2.0 1.5 2.8 144 chr3L 10455806 intergenic not near genes chr3L 10455878 intergenic not near genes chr3L 10455950 intergenic not near genes chr3L_7_10455001 chr3L_10455001 RAL-356 565 chr3L 10658189 10658210 chr3L 10658316 10658317 4 122 0.5 3.5 2.0 1.3 128 chr3L 10658189 intron CG32066 - chr3L 10658253 intron CG32066 - chr3L 10658317 intron CG32066 - chr3L_4_10655001 chr3L_10655001 RAL-356 566 chr3L 10762831 10762864 chr3L 10762915 10762929 9 77 4.0 1.5 2.8 2.4 98 chr3L 10762831 intergenic not near genes chr3L 10762880 intergenic not near genes chr3L 10762929 intergenic not near genes chr3L_9_10760001 chr3L_10760001 RAL-356 567 chr3L 10956452 10956466 chr3L 10956569 10956570 5 115 2.0 3.0 2.5 1.4 118 chr3L 10956452 intergenic not near genes chr3L 10956511 intergenic not near genes chr3L 10956570 intergenic not near genes chr3L_5_10955001 chr3L_10955001 RAL-356 568 chr3L 11097519 11097531 chr3L 11097576 11097590 8 64 3.0 2.5 2.8 2.1 71 chr3L 11097519 intron,3` UTR pncr011:3L +,CG6272 - chr3L 11097554 intron,3` UTR pncr011:3L +,CG6272 - chr3L 11097590 intron,3` UTR pncr011:3L +,CG6272 - chr3L_8_11095001 chr3L_11095001 RAL-356 569 chr3L 11105304 11105326 chr3L 11107003 11107018 X-element 5 1701 1.0 3.5 2.2 1.6 1714 chr3L 11105304 intergenic not near genes chr3L 11106161 intergenic not near genes chr3L 11107018 3` UTR CG32073 - chr3L_5_11105001 chr3L_11105001 RAL-356 570 chr3L 11379120 11379132 chr3L 11379193 11379222 4 80 0.5 2.5 1.5 1.6 102 chr3L 11379120 intergenic not near genes chr3L 11379171 intergenic not near genes chr3L 11379222 intergenic not near genes chr3L_4_11375001 chr3L_11375001 RAL-356 571 chr3L 11435561 11435590 chr3L 11435729 11435759 9 164 3.5 5.0 4.2 1.7 198 chr3L 11435561 intergenic CG6149 -,CR44548 + chr3L 11435660 5` UTR CR44548 + chr3L 11435759 5` UTR CR44548 + chr3L_9_11435001 chr3L_11435001 RAL-356 572 chr3L 11723090 11723107 chr3L 11727879 11727888 Doc 4 4786 3.5 1.5 2.5 1.1 4798 chr3L 11723090 3` UTR Bmcp + chr3L 11725489 intron Bmcp + chr3L 11727888 3` UTR Bmcp + chr3L_4_11725001 chr3L_11725001 RAL-356 573 chr3L 11729695 11729703 chr3L 11729752 11729776 4 66 1.5 1.0 1.2 1.8 81 chr3L 11729695 intron CG32088 + chr3L 11729736 intron CG32088 + chr3L 11729776 exon CG32088 + chr3L_4_11725001 chr3L_11725001 RAL-356 574 chr3L 11744013 11744044 chr3L 11744121 11744132 5 100 6.5 0.0 3.2 1.2 119 chr3L 11744013 exon CG6024 - chr3L 11744072 intron CG6024 - chr3L 11744132 intron CG6024 - chr3L_5_11740001 chr3L_11740001 RAL-356 575 chr3L 11763907 11763920 chr3L 11764337 11764348 6 437 3.0 1.5 2.2 1.9 441 chr3L 11763907 intron CG6024 - chr3L 11764128 intron CG6024 - chr3L 11764348 intron CG6024 - chr3L_6_11760001 chr3L_11760001 RAL-356 576 chr3L 802565 802566 chr3L 11777678 11777678 5 10975112 16.0 15.5 15.8 0.3 10975113 chr3L 802565 intergenic not near genes chr3L 6290122 intergenic not near genes chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_5_6290001 chr3L_6290001 RAL-356 577 chr3L 7749470 7749471 chr3L 11777678 11777678 5 4028208 3.0 15.5 9.2 0.5 4028208 chr3L 7749470 intron,3` UTR CG32373 +,CG13685 + chr3L 9763574 5` UTR CG8177 + chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_5_9760001 chr3L_9760001 RAL-356 578 chr3L 11811454 11811489 chr3L 11811532 11811567 9 72 1.5 5.0 3.2 2.1 113 chr3L 11811454 intron CG42255 - chr3L 11811510 intron CG42255 - chr3L 11811567 exon CG42255 - chr3L_9_11810001 chr3L_11810001 RAL-356 579 chr3L 11826561 11826574 chr3L 11826663 11826679 4 104 6.0 0.5 3.2 1.0 118 chr3L 11826561 intergenic CycA - chr3L 11826620 intergenic CycA - chr3L 11826679 intergenic CycA - chr3L_4_11825001 chr3L_11825001 RAL-356 580 chr3L 11826579 11826590 chr3L 11826662 11826687 7 91 4.5 0.5 2.5 2.0 108 chr3L 11826579 intergenic CycA - chr3L 11826633 intergenic CycA - chr3L 11826687 intergenic CycA - chr3L_7_11825001 chr3L_11825001 RAL-356 581 chr3L 11864568 11864584 chr3L 11865847 11865847 pogo 4 1275 3.0 4.0 3.5 0.9 1279 chr3L 11864568 intron CG44837 - chr3L 11865208 intron CG44837 - chr3L 11865847 intron CG44837 - chr3L_4_11865001 chr3L_11865001 RAL-356 582 chr3L 11871755 11871775 chr3L 11871821 11871850 6 60 2.0 0.0 1.0 3.0 95 chr3L 11871755 intron CG44837 - chr3L 11871802 intron CG44837 - chr3L 11871850 intron CG44837 - chr3L_6_11870001 chr3L_11870001 RAL-356 583 chr3L 12013922 12013932 chr3L 12014002 12014023 6 84 6.0 5.5 5.8 0.9 101 chr3L 12013922 intron rols - chr3L 12013972 intron rols - chr3L 12014023 intron rols - chr3L_6_12010001 chr3L_12010001 RAL-356 584 chr3L 12089084 12089111 chr3L 12089160 12089179 5 68 2.0 1.5 1.8 1.8 95 chr3L 12089084 3` UTR CG17154 + chr3L 12089132 3` UTR CG17154 + chr3L 12089179 3` UTR CG17154 + chr3L_5_12085001 chr3L_12085001 RAL-356 585 chr3L 12221463 12221473 chr3L 12221559 12221566 4 95 2.0 2.0 2.0 1.3 103 chr3L 12221463 intron app - chr3L 12221514 intron app - chr3L 12221566 intron app - chr3L_4_12220001 chr3L_12220001 RAL-356 586 chr3L 12300845 12300882 chr3L 12300984 12301017 8 132 1.5 2.0 1.8 2.9 172 chr3L 12300845 intergenic CR44550 + chr3L 12300931 intergenic CR44550 + chr3L 12301017 5` UTR CR44550 + chr3L_8_12300001 chr3L_12300001 RAL-356 587 chr3L 12318648 12318659 chr3L 12318713 12318724 7 73 7.5 7.5 7.5 0.8 76 chr3L 12318648 intergenic not near genes chr3L 12318686 intergenic not near genes chr3L 12318724 intergenic not near genes chr3L_7_12315001 chr3L_12315001 RAL-356 588 chr3L 12353945 12353952 chr3L 12354014 12354022 4 69 1.5 5.0 3.2 1.0 77 chr3L 12353945 intergenic not near genes chr3L 12353984 intergenic not near genes chr3L 12354022 intergenic not near genes chr3L_4_12350001 chr3L_12350001 RAL-356 589 chr3L 12565358 12565390 chr3L 12565472 12565491 8 111 4.5 2.5 3.5 1.8 133 chr3L 12565358 intron sowah - chr3L 12565424 intron sowah - chr3L 12565491 intron sowah - chr3L_8_12565001 chr3L_12565001 RAL-356 590 chr3L 12647951 12647975 chr3L 12648025 12648041 4 73 1.0 0.5 0.8 2.2 90 chr3L 12647951 5` UTR CR32111 + chr3L 12647996 5` UTR CR32111 + chr3L 12648041 5` UTR CR32111 + chr3L_4_12645001 chr3L_12645001 RAL-356 591 chr3L 12874935 12874956 chr3L 12877219 12877236 jockey 4 2285 1.5 1.5 1.5 1.6 2301 chr3L 12874935 intergenic not near genes chr3L 12876086 intergenic not near genes chr3L 12877236 intergenic not near genes chr3L_4_12875001 chr3L_12875001 RAL-356 592 chr3L 12919279 12919308 chr3L 12924750 12924750 Rt1c 10 5464 5.5 7.5 6.5 1.3 5471 chr3L 12919279 intergenic not near genes chr3L 12922014 intergenic not near genes chr3L 12924750 intergenic not near genes chr3L_10_12920001 chr3L_12920001 RAL-356 593 chr3L 12957806 12957817 chr3L 12962277 12962288 copia 6 4473 3.0 5.0 4.0 1.2 4482 chr3L 12957806 intergenic not near genes chr3L 12960047 intergenic not near genes chr3L 12962288 intergenic not near genes chr3L_6_12960001 chr3L_12960001 RAL-356 594 chr3L 12967157 12967169 chr3L 12967218 12967233 15 73 2.5 3.5 3.0 3.8 76 chr3L 12967157 exon Or69a - chr3L 12967195 exon Or69a - chr3L 12967233 exon Or69a - chr3L_15_12965001 chr3L_12965001 RAL-356 595 chr3L 13007699 13007726 chr3L 13007791 13007801 5 87 0.0 0.5 0.2 4.2 102 chr3L 13007699 exon CG11263 + chr3L 13007750 3` UTR CG11263 + chr3L 13007801 3` UTR CG11263 + chr3L_5_13005001 chr3L_13005001 RAL-356 596 chr3L 13031575 13031605 chr3L 13031662 13031672 4 80 1.0 1.0 1.0 2.0 97 chr3L 13031575 intron CG17672 + chr3L 13031624 intron CG17672 + chr3L 13031672 intron CG17672 + chr3L_4_13030001 chr3L_13030001 RAL-356 597 chr3L 13137665 13137685 chr3L 13137737 13137750 11 74 2.0 4.5 3.2 2.6 85 chr3L 13137665 intergenic not near genes chr3L 13137708 intergenic not near genes chr3L 13137750 intergenic not near genes chr3L_11_13135001 chr3L_13135001 RAL-356 598 chr3L 13154064 13154099 chr3L 13154159 13154194 7 88 4.0 2.0 3.0 1.8 130 chr3L 13154064 intergenic not near genes chr3L 13154129 intergenic not near genes chr3L 13154194 intergenic not near genes chr3L_7_13150001 chr3L_13150001 RAL-356 599 chr3L 13178289 13178303 chr3L 13178385 13178391 4 92 3.5 0.0 1.8 1.4 102 chr3L 13178289 intergenic not near genes chr3L 13178340 intergenic not near genes chr3L 13178391 intergenic not near genes chr3L_4_13175001 chr3L_13175001 RAL-356 600 chr3L 13178304 13178308 chr3L 13178383 13178395 5 87 3.5 0.0 1.8 1.8 91 chr3L 13178304 intergenic not near genes chr3L 13178350 intergenic not near genes chr3L 13178395 intergenic not near genes chr3L_5_13175001 chr3L_13175001 RAL-356 601 chr3L 13192246 13192268 chr3L 13192318 13192332 7 72 2.5 4.0 3.2 1.7 86 chr3L 13192246 intergenic not near genes chr3L 13192289 intergenic not near genes chr3L 13192332 intergenic not near genes chr3L_7_13190001 chr3L_13190001 RAL-356 602 chr3L 13194066 13194098 chr3L 13194145 13194177 5 77 2.0 1.0 1.5 2.0 111 chr3L 13194066 intergenic not near genes chr3L 13194122 intergenic not near genes chr3L 13194177 intergenic not near genes chr3L_5_13190001 chr3L_13190001 RAL-356 603 chr3L 13267309 13267316 chr3L 13267397 13267414 4 91 1.5 1.0 1.2 1.8 105 chr3L 13267309 intron caps + chr3L 13267362 intron caps + chr3L 13267414 intron caps + chr3L_4_13265001 chr3L_13265001 RAL-356 604 chr3L 13280295 13280328 chr3L 13280399 13280422 4 96 2.5 1.0 1.8 1.4 127 chr3L 13280295 intergenic not near genes chr3L 13280358 intergenic not near genes chr3L 13280422 intergenic not near genes chr3L_4_13280001 chr3L_13280001 RAL-356 605 chr3L 13324659 13324666 chr3L 13324754 13324761 4 96 10.0 8.5 9.2 0.4 102 chr3L 13324659 3` UTR CR44558 - chr3L 13324710 3` UTR CR44558 - chr3L 13324761 3` UTR CR44558 - chr3L_4_13320001 chr3L_13320001 RAL-356 606 chr3L 13324667 13324688 chr3L 13324748 13324769 11 85 5.5 6.5 6.0 1.6 102 chr3L 13324667 3` UTR CR44558 - chr3L 13324718 3` UTR CR44558 - chr3L 13324769 3` UTR CR44558 - chr3L_11_13320001 chr3L_13320001 RAL-356 607 chr3L 13525158 13525182 chr3L 13532950 13532978 roo 9 7789 6.0 4.5 5.2 1.5 7820 chr3L 13525158 intergenic not near genes chr3L 13529068 intergenic not near genes chr3L 13532978 intergenic not near genes chr3L_9_13525001 chr3L_13525001 RAL-356 608 chr3L 13648886 13648916 chr3L 13648975 13649004 6 80 2.5 1.5 2.0 2.0 118 chr3L 13648886 intron bru-3 - chr3L 13648945 intron bru-3 - chr3L 13649004 intron bru-3 - chr3L_6_13645001 chr3L_13645001 RAL-356 609 chr3L 13677531 13677554 chr3L 13677608 13677611 5 71 1.0 1.5 1.2 2.3 80 chr3L 13677531 intron bru-3 - chr3L 13677571 intron bru-3 - chr3L 13677611 intron bru-3 - chr3L_5_13675001 chr3L_13675001 RAL-356 610 chr3L 13907605 13907623 chr3L 13907678 13907705 4 80 1.0 4.0 2.5 1.1 100 chr3L 13907605 3` UTR Rgl - chr3L 13907655 3` UTR Rgl - chr3L 13907705 3` UTR Rgl - chr3L_4_13905001 chr3L_13905001 RAL-356 611 chr3L 13931359 13931371 chr3L 13931441 13931476 5 90 0.0 0.5 0.2 4.2 117 chr3L 13931359 intron Gl + chr3L 13931418 intron Gl + chr3L 13931476 intron Gl + chr3L_5_13930001 chr3L_13930001 RAL-356 612 chr3L 14180758 14180766 chr3L 14180830 14180840 4 73 2.0 7.5 4.8 0.7 82 chr3L 14180758 intergenic not near genes chr3L 14180799 intergenic not near genes chr3L 14180840 intergenic not near genes chr3L_4_14180001 chr3L_14180001 RAL-356 613 chr3L 14196439 14196445 chr3L 14196503 14196530 4 76 3.5 2.5 3.0 1.0 91 chr3L 14196439 intron nuf + chr3L 14196484 intron nuf + chr3L 14196530 intron nuf + chr3L_4_14195001 chr3L_14195001 RAL-356 614 chr3L 14205981 14205995 chr3L 14206054 14206083 5 79 7.0 3.5 5.2 0.8 102 chr3L 14205981 intron nuf + chr3L 14206032 intron nuf + chr3L 14206083 intron nuf + chr3L_5_14205001 chr3L_14205001 RAL-356 615 chr3L 14245576 14245591 chr3L 14245663 14245685 1360 7 90 4.0 3.5 3.8 1.5 109 chr3L 14245576 3` UTR CR44561 - chr3L 14245630 3` UTR CR44561 - chr3L 14245685 3` UTR CR44561 - chr3L_7_14245001 chr3L_14245001 RAL-356 616 chr3L 14282589 14282604 chr3L 14282667 14282671 5 75 8.0 4.5 6.2 0.7 82 chr3L 14282589 intron fz + chr3L 14282630 intron fz + chr3L 14282671 intron fz + chr3L_5_14280001 chr3L_14280001 RAL-356 617 chr3L 14295991 14296011 chr3L 14296468 14296485 roo 5 479 5.0 3.0 4.0 1.0 494 chr3L 14295991 intron fz + chr3L 14296238 intron fz + chr3L 14296485 intron fz + chr3L_5_14295001 chr3L_14295001 RAL-356 618 chr3L 14326987 14327000 chr3L 14327106 14327126 6 128 0.5 3.5 2.0 2.0 139 chr3L 14326987 intron fz + chr3L 14327056 intron fz + chr3L 14327126 intron fz + chr3L_6_14325001 chr3L_14325001 RAL-356 619 chr3L 14518561 14518577 chr3L 14518750 14518764 5 192 2.0 3.0 2.5 1.4 203 chr3L 14518561 intron bbg - chr3L 14518662 intron bbg - chr3L 14518764 intron bbg - chr3L_5_14515001 chr3L_14515001 RAL-356 620 chr3L 14721181 14721205 chr3L 14723024 14723031 Rt1c 7 1834 6.5 4.0 5.2 1.1 1850 chr3L 14721181 intron ome + chr3L 14722106 intron ome + chr3L 14723031 intron ome + chr3L_7_14720001 chr3L_14720001 RAL-356 621 chr3L 15085052 15085080 chr3L 15086218 15086218 1360 4 1155 1.0 1.0 1.0 2.0 1166 chr3L 15085052 intron cp309 - chr3L 15085635 intron cp309 - chr3L 15086218 intron cp309 - chr3L_4_15085001 chr3L_15085001 RAL-356 622 chr3L 15265772 15265800 chr3L 15265852 15265864 6 74 0.5 4.0 2.2 1.9 92 chr3L 15265772 intergenic not near genes chr3L 15265818 intergenic not near genes chr3L 15265864 intergenic not near genes chr3L_6_15265001 chr3L_15265001 RAL-356 623 chr3L 15384962 15384989 chr3L 15385083 15385114 6 124 2.5 2.0 2.2 1.9 152 chr3L 15384962 intergenic not near genes chr3L 15385038 intergenic not near genes chr3L 15385114 intergenic not near genes chr3L_6_15385001 chr3L_15385001 RAL-356 624 chr3L 15393683 15393686 chr3L 15393865 15393888 4 193 2.5 2.0 2.2 1.2 205 chr3L 15393683 intergenic not near genes chr3L 15393786 intergenic not near genes chr3L 15393888 intergenic not near genes chr3L_4_15390001 chr3L_15390001 RAL-356 625 chr3L 15423762 15423780 chr3L 15426606 15426624 opus 4 2840 1.0 1.5 1.2 1.8 2862 chr3L 15423762 intergenic not near genes chr3L 15425193 intergenic not near genes chr3L 15426624 intergenic not near genes chr3L_4_15425001 chr3L_15425001 RAL-356 626 chr3L 15594633 15594653 chr3L 15594704 15594726 4 68 1.0 1.5 1.2 1.8 93 chr3L 15594633 intron RhoGAP71E + chr3L 15594680 intron RhoGAP71E + chr3L 15594726 intron RhoGAP71E + chr3L_4_15590001 chr3L_15590001 RAL-356 627 chr3L 16145365 16145376 chr3L 16145440 16145449 4 78 9.0 10.5 9.8 0.4 84 chr3L 16145365 intron CG5151 - chr3L 16145407 intron CG5151 - chr3L 16145449 intron CG5151 - chr3L_4_16145001 chr3L_16145001 RAL-356 628 chr3L 16443870 16443879 chr3L 16446187 16446219 Doc 7 2325 1.0 6.5 3.8 1.5 2349 chr3L 16443870 intron,intron CG33158 +,dsx-c73A - chr3L 16445044 intron,intron CG33158 +,dsx-c73A - chr3L 16446219 intron,intron CG33158 +,dsx-c73A - chr3L_7_16445001 chr3L_16445001 RAL-356 629 chr3L 16493978 16494013 chr3L 16494490 16494503 jockey 15 503 7.0 5.5 6.2 2.1 525 chr3L 16493978 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494240 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494503 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_15_16490001 chr3L_16490001 RAL-356 630 chr3L 16532901 16532925 chr3L 16532968 16532977 5 62 2.5 1.0 1.8 1.8 76 chr3L 16532901 intron CG43373 - chr3L 16532939 intron CG43373 - chr3L 16532977 intron CG43373 - chr3L_5_16530001 chr3L_16530001 RAL-356 631 chr3L 16786988 16786999 chr3L 16787046 16787074 5 68 0.0 3.5 1.8 1.8 86 chr3L 16786988 intergenic Int6 - chr3L 16787031 intergenic Int6 - chr3L 16787074 intergenic Int6 -,CG9674 - chr3L_5_16785001 chr3L_16785001 RAL-356 632 chr3L 16805031 16805041 chr3L 16805145 16805151 4 113 3.0 3.0 3.0 1.0 120 chr3L 16805031 intron,5` UTR CG9674 -,nudC + chr3L 16805091 intron,5` UTR CG9674 -,nudC + chr3L 16805151 intron,5` UTR CG9674 -,nudC + chr3L_4_16805001 chr3L_16805001 RAL-356 633 chr3L 16818747 16818779 chr3L 16818823 16818850 5 74 3.5 1.0 2.2 1.6 103 chr3L 16818747 intron,intron nudC +,CG13024 - chr3L 16818798 intron,intron nudC +,CG13024 - chr3L 16818850 intron,intron nudC +,CG13024 - chr3L_5_16815001 chr3L_16815001 RAL-356 634 chr3L 16945745 16945760 chr3L 16954881 16954893 roo 5 9132 5.5 5.0 5.2 0.8 9148 chr3L 16945745 exon Obp73a + chr3L 16950319 intergenic not near genes chr3L 16954893 5` UTR Nc73EF + chr3L_5_16950001 chr3L_16950001 RAL-356 635 chr3L 17026796 17026817 chr3L 17026872 17026898 4 75 5.5 1.5 3.5 0.9 102 chr3L 17026796 exon Fit2 + chr3L 17026847 3` UTR Fit2 + chr3L 17026898 3` UTR Fit2 + chr3L_4_17025001 chr3L_17025001 RAL-356 636 chr3L 17085017 17085036 chr3L 17094156 17094177 roo 7 9143 2.5 2.5 2.5 2.0 9160 chr3L 17085017 intron Rbp6 - chr3L 17089597 intron Rbp6 - chr3L 17094177 intron Rbp6 - chr3L_7_17085001 chr3L_17085001 RAL-356 637 chr3L 17120655 17120683 chr3L 17120731 17120759 4 71 3.0 2.5 2.8 1.1 104 chr3L 17120655 intron Rbp6 - chr3L 17120707 intron Rbp6 - chr3L 17120759 intron Rbp6 - chr3L_4_17120001 chr3L_17120001 RAL-356 638 chr3L 17344630 17344654 chr3L 17344713 17344737 6 81 5.0 3.5 4.2 1.2 107 chr3L 17344630 exon brv2 - chr3L 17344684 5` UTR brv2 - chr3L 17344737 intergenic brv2 -,Mip - chr3L_6_17340001 chr3L_17340001 RAL-356 639 chr3L 17411052 17411058 chr3L 17411301 17411320 4 254 2.0 4.0 3.0 1.0 268 chr3L 17411052 intron blot - chr3L 17411186 intron blot - chr3L 17411320 intron blot - chr3L_4_17410001 chr3L_17410001 RAL-356 640 chr3L 17498102 17498112 chr3L 17498178 17498189 4 77 3.0 2.0 2.5 1.1 87 chr3L 17498102 intron Oatp74D + chr3L 17498146 intron Oatp74D + chr3L 17498189 intron Oatp74D + chr3L_4_17495001 chr3L_17495001 RAL-356 641 chr3L 17510744 17510763 chr3L 17510828 17510835 6 80 3.0 4.5 3.8 1.2 91 chr3L 17510744 exon Oatp74D + chr3L 17510790 intron Oatp74D + chr3L 17510835 intron Oatp74D + chr3L_6_17510001 chr3L_17510001 RAL-356 642 chr3L 17535825 17535839 chr3L 17535925 17535937 6 104 4.0 2.5 3.2 1.4 112 chr3L 17535825 intron Nedd4 + chr3L 17535881 intron Nedd4 + chr3L 17535937 intron Nedd4 + chr3L_6_17535001 chr3L_17535001 RAL-356 643 chr3L 17580590 17580606 chr3L 17580762 17580767 6 172 5.0 0.0 2.5 1.7 177 chr3L 17580590 intron Eip74EF - chr3L 17580678 intron Eip74EF - chr3L 17580767 intron Eip74EF - chr3L_6_17580001 chr3L_17580001 RAL-356 644 chr3L 17646024 17646032 chr3L 17646191 17646211 5 169 23.5 25.5 24.5 0.2 187 chr3L 17646024 exon CG43085 - chr3L 17646118 exon CG43085 - chr3L 17646211 exon CG43085 - chr3L_5_17645001 chr3L_17645001 RAL-356 645 chr3L 18000675 18000708 chr3L 18000750 18000785 6 72 2.0 4.5 3.2 1.4 110 chr3L 18000675 intron Eip75B - chr3L 18000730 intron Eip75B - chr3L 18000785 intron Eip75B - chr3L_6_18000001 chr3L_18000001 RAL-356 646 chr3L 18306608 18306628 chr3L 18306788 18306808 5 176 3.5 3.5 3.5 1.1 200 chr3L 18306608 intergenic not near genes chr3L 18306708 intergenic not near genes chr3L 18306808 intergenic not near genes chr3L_5_18305001 chr3L_18305001 RAL-356 647 chr3L 18376087 18376103 chr3L 18376176 18376180 5 85 2.0 0.0 1.0 2.5 93 chr3L 18376087 intergenic not near genes chr3L 18376134 intergenic not near genes chr3L 18376180 intergenic not near genes chr3L_5_18375001 chr3L_18375001 RAL-356 648 chr3L 18376104 18376112 chr3L 18376172 18376201 5 82 1.5 0.0 0.8 2.8 97 chr3L 18376104 intergenic not near genes chr3L 18376152 intergenic not near genes chr3L 18376201 intergenic not near genes chr3L_5_18375001 chr3L_18375001 RAL-356 649 chr3L 9013691 9013693 chr3L 18417066 18417066 4 9403374 26.5 12.5 19.5 0.2 9403375 chr3L 9013691 intron Doc2 - chr3L 13715378 intron bru-3 - chr3L 18417066 intergenic not near genes chr3L_4_13715001 chr3L_13715001 RAL-356 650 chr3L 18464494 18464514 chr3L 18464572 18464579 9 77 3.0 6.0 4.5 1.6 85 chr3L 18464494 intergenic not near genes chr3L 18464536 intergenic not near genes chr3L 18464579 intergenic not near genes chr3L_9_18460001 chr3L_18460001 RAL-356 651 chr3L 18656186 18656219 chr3L 18656271 18656288 11 80 4.0 2.0 3.0 2.8 102 chr3L 18656186 intron MYPT-75D + chr3L 18656237 intron MYPT-75D + chr3L 18656288 intron MYPT-75D + chr3L_11_18655001 chr3L_18655001 RAL-356 652 chr3L 18721776 18721785 chr3L 18721867 18721876 5 90 5.5 1.0 3.2 1.2 100 chr3L 18721776 intergenic CG12477 - chr3L 18721826 intergenic CG12477 - chr3L 18721876 intergenic CG12477 - chr3L_5_18720001 chr3L_18720001 RAL-356 653 chr3L 18772411 18772431 chr3L 18781089 18781101 roo 6 8673 5.5 2.5 4.0 1.2 8690 chr3L 18772411 intron ftz-f1 - chr3L 18776756 intron ftz-f1 - chr3L 18781101 intron ftz-f1 - chr3L_6_18775001 chr3L_18775001 RAL-356 654 chr3L 18966840 18966847 chr3L 18966977 18966998 6 146 4.0 5.0 4.5 1.1 158 chr3L 18966840 intergenic not near genes chr3L 18966919 intergenic not near genes chr3L 18966998 intergenic not near genes chr3L_6_18965001 chr3L_18965001 RAL-356 655 chr3L 18972401 18972410 chr3L 18972462 18972470 4 60 7.5 4.5 6.0 0.6 69 chr3L 18972401 intergenic not near genes chr3L 18972436 intergenic not near genes chr3L 18972470 intergenic not near genes chr3L_4_18970001 chr3L_18970001 RAL-356 656 chr3L 18972411 18972425 chr3L 18972461 18972500 7 68 7.0 4.0 5.5 1.1 89 chr3L 18972411 intergenic not near genes chr3L 18972456 intergenic not near genes chr3L 18972500 intergenic not near genes chr3L_7_18970001 chr3L_18970001 RAL-356 657 chr3L 19082036 19082071 chr3L 19082138 19082158 8 98 6.0 4.5 5.2 1.3 122 chr3L 19082036 intron Mkp3 - chr3L 19082097 intron Mkp3 - chr3L 19082158 intron Mkp3 - chr3L_8_19080001 chr3L_19080001 RAL-356 658 chr3L 19115648 19115671 chr3L 19115824 19115843 BS 4 176 4.0 4.0 4.0 0.8 195 chr3L 19115648 intron CG14082 - chr3L 19115746 intron CG14082 - chr3L 19115843 intron CG14082 - chr3L_4_19115001 chr3L_19115001 RAL-356 659 chr3L 19117049 19117062 chr3L 19124494 19124495 mdg1 4 7442 7.5 6.5 7.0 0.5 7446 chr3L 19117049 intron CG14082 - chr3L 19120772 intron CG14082 - chr3L 19124495 intron CG14082 - chr3L_4_19120001 chr3L_19120001 RAL-356 660 chr3L 19208056 19208088 chr3L 19209430 19209444 Doc 5 1368 3.0 2.0 2.5 1.4 1388 chr3L 19208056 intron fz2 - chr3L 19208750 intron fz2 - chr3L 19209444 intron fz2 - chr3L_5_19205001 chr3L_19205001 RAL-356 661 chr3L 19269815 19269847 chr3L 19270019 19270048 8 197 2.5 4.5 3.5 1.8 233 chr3L 19269815 intron,exon CG14085 +,CG14088 - chr3L 19269932 intron,exon CG14085 +,CG14088 - chr3L 19270048 intron,exon CG14085 +,CG14088 - chr3L_8_19265001 chr3L_19265001 RAL-356 662 chr3L 19343600 19343624 chr3L 19343731 19343764 5 137 0.0 2.5 1.2 2.3 164 chr3L 19343600 exon CG32206 - chr3L 19343682 intron CG32206 - chr3L 19343764 intron CG32206 - chr3L_5_19340001 chr3L_19340001 RAL-356 663 chr3L 19377799 19377826 chr3L 19378483 19378512 4 686 3.5 2.0 2.8 1.1 713 chr3L 19377799 intron CG32206 - chr3L 19378156 intron CG32206 - chr3L 19378512 intron CG32206 - chr3L_4_19375001 chr3L_19375001 RAL-356 664 chr3L 19430411 19430432 chr3L 19430482 19430491 6 67 1.5 3.0 2.2 1.9 80 chr3L 19430411 intergenic not near genes chr3L 19430451 intergenic not near genes chr3L 19430491 intergenic not near genes chr3L_6_19430001 chr3L_19430001 RAL-356 665 chr3L 19479345 19479379 chr3L 19479423 19479444 5 73 1.5 1.5 1.5 2.0 99 chr3L 19479345 intergenic not near genes chr3L 19479394 intergenic not near genes chr3L 19479444 intergenic not near genes chr3L_5_19475001 chr3L_19475001 RAL-356 666 chr3L 19480666 19480685 chr3L 19480767 19480785 5 95 1.5 0.5 1.0 2.5 119 chr3L 19480666 intergenic not near genes chr3L 19480726 intergenic not near genes chr3L 19480785 intergenic not near genes chr3L_5_19480001 chr3L_19480001 RAL-356 667 chr3L 19703855 19703872 chr3L 19704009 19704020 5 148 2.5 7.0 4.8 0.9 165 chr3L 19703855 intron serp - chr3L 19703938 intron serp - chr3L 19704020 intron serp - chr3L_5_19700001 chr3L_19700001 RAL-356 668 chr3L 19848507 19848534 chr3L 19857693 19857703 roo 5 9181 0.5 4.5 2.5 1.4 9196 chr3L 19848507 intron Papss + chr3L 19853105 intron Papss + chr3L 19857703 intron Papss + chr3L_5_19850001 chr3L_19850001 RAL-356 669 chr3L 20038817 20038851 chr3L 20038995 20039007 6 170 1.5 1.0 1.2 2.7 190 chr3L 20038817 intergenic not near genes chr3L 20038912 intergenic not near genes chr3L 20039007 intergenic not near genes chr3L_6_20035001 chr3L_20035001 RAL-356 670 chr3L 20057574 20057588 chr3L 20057678 20057694 6 106 1.5 3.5 2.5 1.7 120 chr3L 20057574 intergenic not near genes chr3L 20057634 intergenic not near genes chr3L 20057694 intergenic not near genes chr3L_6_20055001 chr3L_20055001 RAL-356 671 chr3L 20143086 20143115 chr3L 20143165 20143185 6 74 2.5 2.0 2.2 1.9 99 chr3L 20143086 intergenic not near genes chr3L 20143136 intergenic not near genes chr3L 20143185 intergenic not near genes chr3L_6_20140001 chr3L_20140001 RAL-356 672 chr3L 20177245 20177258 chr3L 20177334 20177337 5 87 9.5 3.0 6.2 0.7 92 chr3L 20177245 intron CG42674 - chr3L 20177291 intron CG42674 - chr3L 20177337 intron CG42674 - chr3L_5_20175001 chr3L_20175001 RAL-356 673 chr3L 20177261 20177274 chr3L 20177332 20177363 6 76 6.0 3.0 4.5 1.1 102 chr3L 20177261 intron CG42674 - chr3L 20177312 intron CG42674 - chr3L 20177363 intron CG42674 - chr3L_6_20175001 chr3L_20175001 RAL-356 674 chr3L 20257335 20257362 chr3L 20258454 20258464 pogo 6 1112 1.5 4.0 2.8 1.6 1129 chr3L 20257335 intron rdgC + chr3L 20257900 intron rdgC + chr3L 20258464 intron rdgC + chr3L_6_20255001 chr3L_20255001 RAL-356 675 chr3L 20476752 20476772 chr3L 20484351 20484371 springer 5 7595 2.5 0.5 1.5 2.0 7619 chr3L 20476752 3` UTR isoQC + chr3L 20480562 intergenic not near genes chr3L 20484371 3` UTR ZnT77C - chr3L_5_20480001 chr3L_20480001 RAL-356 676 chr3L 20699905 20699918 chr3L 20699982 20699982 5 72 3.5 5.0 4.2 1.0 77 chr3L 20699905 intergenic not near genes chr3L 20699944 intergenic not near genes chr3L 20699982 intergenic not near genes chr3L_5_20695001 chr3L_20695001 RAL-356 677 chr3L 20699919 20699927 chr3L 20699979 20699982 4 60 2.0 4.0 3.0 1.0 63 chr3L 20699919 intergenic not near genes chr3L 20699950 intergenic not near genes chr3L 20699982 intergenic not near genes chr3L_4_20695001 chr3L_20695001 RAL-356 678 chr3L 20710770 20710785 chr3L 20710835 20710862 4 70 1.0 1.0 1.0 2.0 92 chr3L 20710770 intergenic not near genes chr3L 20710816 intergenic not near genes chr3L 20710862 intergenic not near genes chr3L_4_20710001 chr3L_20710001 RAL-356 679 chr3L 20849276 20849301 chr3L 20849354 20849365 7 70 1.0 2.0 1.5 2.8 89 chr3L 20849276 intron CG32432 - chr3L 20849320 intron CG32432 - chr3L 20849365 intron CG32432 - chr3L_7_20845001 chr3L_20845001 RAL-356 680 chr3L 20913751 20913781 chr3L 20913833 20913838 17 75 3.0 2.5 2.8 4.5 87 chr3L 20913751 intergenic CR43930 - chr3L 20913794 intergenic CR43930 - chr3L 20913838 intergenic CR43930 - chr3L_17_20910001 chr3L_20910001 RAL-356 681 chr3L 21082209 21082237 chr3L 21082287 21082311 13 73 1.5 2.0 1.8 4.6 102 chr3L 21082209 intron ko - chr3L 21082260 intron ko - chr3L 21082311 intron ko - chr3L_13_21080001 chr3L_21080001 RAL-356 682 chr3L 21151872 21151892 chr3L 21156956 21156963 flea 4 5081 4.5 1.5 3.0 1.0 5091 chr3L 21151872 intron Ac78C - chr3L 21154418 intron Ac78C - chr3L 21156963 intron Ac78C - chr3L_4_21150001 chr3L_21150001 RAL-356 683 chr3L 21158535 21158550 chr3L 21158655 21158677 4 127 2.5 3.0 2.8 1.1 142 chr3L 21158535 intron Ac78C - chr3L 21158606 intron Ac78C - chr3L 21158677 intron Ac78C - chr3L_4_21155001 chr3L_21155001 RAL-356 684 chr3L 21161426 21161460 chr3L 21161505 21161525 7 72 2.0 2.0 2.0 2.3 99 chr3L 21161426 intron Ac78C - chr3L 21161476 intron Ac78C - chr3L 21161525 intron Ac78C - chr3L_7_21160001 chr3L_21160001 RAL-356 685 chr3L 21407003 21407026 chr3L 21407077 21407086 5 70 2.0 5.5 3.8 1.0 83 chr3L 21407003 intron rgn + chr3L 21407044 intron rgn + chr3L 21407086 intron rgn + chr3L_5_21405001 chr3L_21405001 RAL-356 686 chr3L 21412747 21412778 chr3L 21412825 21412845 6 73 2.0 3.5 2.8 1.6 98 chr3L 21412747 intron rgn + chr3L 21412796 intron rgn + chr3L 21412845 intron rgn + chr3L_6_21410001 chr3L_21410001 RAL-356 687 chr3L 21415142 21415151 chr3L 21415224 21415228 5 81 3.5 3.0 3.2 1.2 86 chr3L 21415142 intron rgn + chr3L 21415185 intron rgn + chr3L 21415228 intron rgn + chr3L_5_21415001 chr3L_21415001 RAL-356 688 chr3L 21415154 21415165 chr3L 21415220 21415248 7 75 1.5 2.0 1.8 2.5 94 chr3L 21415154 intron rgn + chr3L 21415201 intron rgn + chr3L 21415248 intron rgn + chr3L_7_21415001 chr3L_21415001 RAL-356 689 chr3L 21498839 21498870 chr3L 21500475 21500486 1360 11 1627 5.0 3.5 4.2 2.1 1647 chr3L 21498839 intron Glg1 - chr3L 21499662 intron Glg1 - chr3L 21500486 intron Glg1 - chr3L_11_21495001 chr3L_21495001 RAL-356 690 chr3L 21637338 21637357 chr3L 21637411 21637430 9 76 2.0 2.0 2.0 3.0 92 chr3L 21637338 intron CG32444 + chr3L 21637384 intron CG32444 + chr3L 21637430 intron CG32444 + chr3L_9_21635001 chr3L_21635001 RAL-356 691 chr3L 21671060 21671087 chr3L 21671203 21671235 6 144 1.5 3.0 2.2 1.9 175 chr3L 21671060 intergenic not near genes chr3L 21671148 intergenic not near genes chr3L 21671235 intergenic not near genes chr3L_6_21670001 chr3L_21670001 RAL-356 692 chr3L 21749315 21749351 chr3L 21754475 21754510 Doc 8 5153 2.5 2.0 2.2 2.5 5195 chr3L 21749315 intron Syn1 - chr3L 21751912 intron Syn1 - chr3L 21754510 intron Syn1 - chr3L_8_21750001 chr3L_21750001 RAL-356 693 chr3L 21799960 21799970 chr3L 21800023 21800046 4 74 2.5 0.5 1.5 1.6 86 chr3L 21799960 intergenic not near genes chr3L 21800003 intergenic not near genes chr3L 21800046 intergenic not near genes chr3L_4_21795001 chr3L_21795001 RAL-356 694 chr3L 21871641 21871659 chr3L 21871704 21871719 8 62 1.5 1.0 1.2 3.6 78 chr3L 21871641 intron mub + chr3L 21871680 intron mub + chr3L 21871719 intron mub + chr3L_8_21870001 chr3L_21870001 RAL-356 695 chr3L 21902230 21902262 chr3L 21902619 21902638 18 382 4.5 5.5 5.0 3.0 408 chr3L 21902230 intron mub + chr3L 21902434 intron mub + chr3L 21902638 intron mub + chr3L_18_21900001 chr3L_21900001 RAL-356 696 chr3L 21966485 21966509 chr3L 21966567 21966590 4 78 3.5 6.0 4.8 0.7 105 chr3L 21966485 intron CS-2 + chr3L 21966538 intron CS-2 + chr3L 21966590 intron CS-2 + chr3L_4_21965001 chr3L_21965001 RAL-356 697 chr3L 22169465 22169487 chr3L 22169552 22169566 5 81 5.0 3.5 4.2 1.0 101 chr3L 22169465 intron olf413 + chr3L 22169516 intron olf413 + chr3L 22169566 intron olf413 + chr3L_5_22165001 chr3L_22165001 RAL-356 698 chr3L 22523538 22523565 chr3L 22523708 22523739 7 167 2.5 4.5 3.5 1.6 201 chr3L 22523538 intergenic not near genes chr3L 22523638 intergenic not near genes chr3L 22523739 intergenic not near genes chr3L_7_22520001 chr3L_22520001 RAL-356 699 chr3L 22555769 22555792 chr3L 22563239 22563259 blood 4 7463 3.0 3.5 3.2 1.0 7490 chr3L 22555769 intergenic not near genes chr3L 22559514 intergenic not near genes chr3L 22563259 intergenic not near genes chr3L_4_22555001 chr3L_22555001 RAL-356 700 chr3L 22577627 22577651 chr3L 22582415 22582429 Doc 7 4782 2.0 3.5 2.8 1.8 4802 chr3L 22577627 intergenic not near genes chr3L 22580028 intergenic not near genes chr3L 22582429 3` UTR CG14459 - chr3L_7_22580001 chr3L_22580001 RAL-356 701 chr3L 22617188 22617220 chr3L 22624640 22624657 blood 7 7444 5.0 1.0 3.0 1.8 7469 chr3L 22617188 intron CG14459 - chr3L 22620922 intron CG14459 - chr3L 22624657 intron CG14459 - chr3L_7_22620001 chr3L_22620001 RAL-356 702 chr3L 22678074 22678108 chr3L 22678167 22678200 18 85 3.5 4.0 3.8 3.8 126 chr3L 22678074 intron CG14457 + chr3L 22678137 intron CG14457 + chr3L 22678200 intron CG14457 + chr3L_18_22675001 chr3L_22675001 RAL-356 703 chr3L 22734304 22734338 chr3L 22734392 22734426 10 85 1.5 3.0 2.2 3.1 122 chr3L 22734304 intron CG11241 - chr3L 22734365 intron CG11241 - chr3L 22734426 intron CG11241 - chr3L_10_22730001 chr3L_22730001 RAL-356 704 chr3L 22853692 22853723 chr3L 22853778 22853795 8 84 1.0 3.5 2.2 2.5 103 chr3L 22853692 5` UTR CR43426 + chr3L 22853744 5` UTR CR43426 + chr3L 22853795 5` UTR CR43426 + chr3L_8_22850001 chr3L_22850001 RAL-356 705 chr3L 22866006 22866011 chr3L 22867115 22867144 Doc 4 1116 5.0 1.0 3.0 1.0 1138 chr3L 22866006 intron CG33170 + chr3L 22866575 intron CG33170 + chr3L 22867144 intron CG33170 + chr3L_4_22865001 chr3L_22865001 RAL-356 706 chr3L 22897196 22897221 chr3L 22897279 22897302 10 80 3.5 2.5 3.0 2.5 106 chr3L 22897196 intergenic not near genes chr3L 22897249 intergenic not near genes chr3L 22897302 intergenic not near genes chr3L_10_22895001 chr3L_22895001 RAL-356 707 chr3L 22974378 22974389 chr3L 22974438 22974461 4 68 5.5 4.0 4.8 0.7 83 chr3L 22974378 intergenic not near genes chr3L 22974420 intergenic not near genes chr3L 22974461 intergenic not near genes chr3L_4_22970001 chr3L_22970001 RAL-356 708 chr3L 23875548 23875551 chr3L 23875614 23875617 4 73 5.0 8.5 6.8 0.5 69 chr3L 23875548 intron CG40470 - chr3L 23875582 intron CG40470 - chr3L 23875617 intron CG40470 - chr3L_4_23875001 chr3L_23875001 RAL-356 709 chr3L 24084496 24084515 chr3L 24084573 24084576 6 71 1.5 1.5 1.5 2.4 80 chr3L 24084496 intron Snap25 + chr3L 24084536 intron Snap25 + chr3L 24084576 intron Snap25 + chr3L_6_24080001 chr3L_24080001 RAL-356 710 chr3L 24750856 24750879 chr3L 24751164 24751168 4 303 1.0 3.5 2.2 1.2 312 chr3L 24750856 intron scro + chr3L 24751012 intron scro + chr3L 24751168 intron scro + chr3L_4_24750001 chr3L_24750001 RAL-356 711 chr3L 25464043 25464095 chr3L 25464108 25464193 5 88 3.0 2.5 2.8 1.3 150 chr3L 25464043 intergenic not near genes chr3L 25464118 intergenic not near genes chr3L 25464193 intergenic not near genes chr3L_5_25460001 chr3L_25460001 RAL-356 712 chr3L 25513583 25513605 chr3L 25513656 25513684 4 76 2.0 2.5 2.2 1.2 101 chr3L 25513583 intron CG41343 - chr3L 25513634 intron CG41343 - chr3L 25513684 intron CG41343 - chr3L_4_25510001 chr3L_25510001 RAL-356 713 chr3L 25514882 25514900 chr3L 25514972 25514978 7 83 2.0 3.0 2.5 2.0 96 chr3L 25514882 intron CG41343 - chr3L 25514930 intron CG41343 - chr3L 25514978 intron CG41343 - chr3L_7_25510001 chr3L_25510001 RAL-356 714 chr3L 27390437 27390708 chr3L 27390636 27390787 6 99 33.0 34.0 33.5 0.2 350 chr3L 27390437 intron Dbp80 + chr3L 27390612 intron Dbp80 + chr3L 27390787 intron Dbp80 + chr3L_6_27390001 chr3L_27390001 RAL-356 715 chr3R 758869 758897 chr3R 758970 758973 4 91 2.5 1.0 1.8 1.4 104 chr3R 758869 intergenic not near genes chr3R 758921 intergenic not near genes chr3R 758973 intergenic not near genes chr3R_4_755001 chr3R_755001 RAL-356 716 chr3R 2534140 2534165 chr3R 2541701 2541713 11 7558 20.5 18.5 19.5 0.5 7573 chr3R 2534140 intergenic not near genes chr3R 2537926 intergenic not near genes chr3R 2541713 intergenic not near genes chr3R_11_2535001 chr3R_2535001 RAL-356 717 chr3R 3877494 3877504 chr3R 3877616 3877626 5 130 4.0 3.5 3.8 1.0 132 chr3R 3877494 intergenic not near genes chr3R 3877560 intergenic not near genes chr3R 3877626 intergenic not near genes chr3R_5_3875001 chr3R_3875001 RAL-356 718 chr3R 4063815 4063831 chr3R 4069095 4069101 4 5277 8.5 10.0 9.2 0.4 5286 chr3R 4063815 intergenic not near genes chr3R 4066458 intergenic not near genes chr3R 4069101 intergenic not near genes chr3R_4_4065001 chr3R_4065001 RAL-356 719 chr3R 4472941 4472956 chr3R 4473175 4473185 4 234 4.0 2.5 3.2 1.0 244 chr3R 4472941 intron CG31523 - chr3R 4473063 intron CG31523 - chr3R 4473185 intron CG31523 - chr3R_4_4470001 chr3R_4470001 RAL-356 720 chr3R 4609548 4609579 chr3R 4610712 4610729 1360 8 1158 7.0 3.0 5.0 1.3 1181 chr3R 4609548 intergenic not near genes chr3R 4610138 intergenic not near genes chr3R 4610729 intergenic not near genes chr3R_8_4610001 chr3R_4610001 RAL-356 721 chr3R 4753257 4753271 chr3R 4757543 4757572 F-element 9 4293 5.0 6.5 5.8 1.3 4315 chr3R 4753257 intron,intron atms +,CG44098 - chr3R 4755414 intron,intron atms +,CG44098 - chr3R 4757572 intron,exon atms +,CG44098 - chr3R_9_4755001 chr3R_4755001 RAL-356 722 chr3R 4769159 4769189 chr3R 4769237 4769251 8 76 3.5 1.0 2.2 2.5 92 chr3R 4769159 intron,intron atms +,CG44098 - chr3R 4769205 intron,intron atms +,CG44098 - chr3R 4769251 intron,intron atms +,CG44098 - chr3R_8_4765001 chr3R_4765001 RAL-356 723 chr3R 4887479 4887509 chr3R 4894856 4894860 rover 7 7370 2.0 4.0 3.0 1.8 7381 chr3R 4887479 intergenic not near genes chr3R 4891170 intergenic not near genes chr3R 4894860 intergenic not near genes chr3R_7_4890001 chr3R_4890001 RAL-356 724 chr3R 5067984 5068013 chr3R 5073501 5073513 mdg3 7 5508 2.5 6.0 4.2 1.3 5529 chr3R 5067984 intergenic not near genes chr3R 5070748 intergenic not near genes chr3R 5073513 intergenic not near genes chr3R_7_5070001 chr3R_5070001 RAL-356 725 chr3R 5133144 5133166 chr3R 5133260 5133279 9 110 3.5 5.0 4.2 1.7 135 chr3R 5133144 intergenic not near genes chr3R 5133212 intergenic not near genes chr3R 5133279 intergenic not near genes chr3R_9_5130001 chr3R_5130001 RAL-356 726 chr3R 5275769 5275788 chr3R 5275840 5275843 5 68 2.0 1.5 1.8 1.8 74 chr3R 5275769 intron,3` UTR mtd -,CG31538 - chr3R 5275806 intron,3` UTR mtd -,CG31538 - chr3R 5275843 intron,3` UTR mtd -,CG31538 - chr3R_5_5275001 chr3R_5275001 RAL-356 727 chr3R 5337365 5337381 chr3R 5337431 5337442 6 68 3.0 3.0 3.0 1.5 77 chr3R 5337365 intron mtd - chr3R 5337404 intron mtd - chr3R 5337442 intron mtd - chr3R_6_5335001 chr3R_5335001 RAL-356 728 chr3R 5338408 5338424 chr3R 5343572 5343585 Rt1c 7 5165 4.0 9.5 6.8 0.9 5177 chr3R 5338408 intron mtd - chr3R 5340996 intron mtd - chr3R 5343585 intron mtd - chr3R_7_5340001 chr3R_5340001 RAL-356 729 chr3R 5376761 5376783 chr3R 5376846 5376870 5 81 1.5 4.5 3.0 1.2 109 chr3R 5376761 intergenic 7B2 +,CG14667 + chr3R 5376816 5` UTR 7B2 + chr3R 5376870 5` UTR 7B2 + chr3R_5_5375001 chr3R_5375001 RAL-356 730 chr3R 5385980 5386007 chr3R 5386151 5386178 4 170 1.5 4.0 2.8 1.1 198 chr3R 5385980 intron kkv - chr3R 5386079 intron kkv - chr3R 5386178 intron kkv - chr3R_4_5385001 chr3R_5385001 RAL-356 731 chr3R 5445979 5445993 chr3R 5452435 5452453 Burdock 5 6459 0.0 4.0 2.0 1.7 6474 chr3R 5445979 intron CG14669 + chr3R 5449216 intron CG14669 + chr3R 5452453 intron CG14669 + chr3R_5_5445001 chr3R_5445001 RAL-356 732 chr3R 5712081 5712108 chr3R 5712169 5712183 6 84 1.5 1.5 1.5 2.4 102 chr3R 5712081 3` UTR plx + chr3R 5712132 3` UTR plx + chr3R 5712183 3` UTR plx + chr3R_6_5710001 chr3R_5710001 RAL-356 733 chr3R 5746027 5746044 chr3R 5746258 5746266 pogo 5 227 2.0 2.5 2.2 1.6 239 chr3R 5746027 3` UTR Madm + chr3R 5746146 3` UTR Madm + chr3R 5746266 3` UTR Madm + chr3R_5_5745001 chr3R_5745001 RAL-356 734 chr3R 5765635 5765648 chr3R 5765717 5765721 6 79 5.5 2.0 3.8 1.2 86 chr3R 5765635 intron CG2082 - chr3R 5765678 intron CG2082 - chr3R 5765721 intron CG2082 - chr3R_6_5765001 chr3R_5765001 RAL-356 735 chr3R 5767435 5767450 chr3R 5767781 5767789 8 344 5.5 1.5 3.5 1.8 354 chr3R 5767435 intron CG2082 - chr3R 5767612 intron CG2082 - chr3R 5767789 intron CG2082 - chr3R_8_5765001 chr3R_5765001 RAL-356 736 chr3R 5769254 5769261 chr3R 5769331 5769347 4 86 3.0 2.5 2.8 1.1 93 chr3R 5769254 intron CG2082 - chr3R 5769300 intron CG2082 - chr3R 5769347 intron CG2082 - chr3R_4_5765001 chr3R_5765001 RAL-356 737 chr3R 5772381 5772406 chr3R 5772539 5772548 5 155 2.5 5.5 4.0 1.0 167 chr3R 5772381 intron CG2082 - chr3R 5772464 intron CG2082 - chr3R 5772548 intron CG2082 - chr3R_5_5770001 chr3R_5770001 RAL-356 738 chr3R 5809120 5809138 chr3R 5809377 5809395 pogo 4 255 1.5 3.0 2.2 1.2 275 chr3R 5809120 3` UTR CG11000 + chr3R 5809258 3` UTR CG11000 + chr3R 5809395 3` UTR CG11000 + chr3R_4_5805001 chr3R_5805001 RAL-356 739 chr3R 5822399 5822409 chr3R 5823544 5823576 1360 5 1158 3.0 3.5 3.2 1.2 1177 chr3R 5822399 3` UTR CG2023 - chr3R 5822988 3` UTR CG2023 - chr3R 5823576 3` UTR CG2023 - chr3R_5_5820001 chr3R_5820001 RAL-356 740 chr3R 5840821 5840851 chr3R 5840910 5840923 13 84 4.5 6.0 5.2 2.1 102 chr3R 5840821 intergenic CG1213 + chr3R 5840872 intergenic CG1213 + chr3R 5840923 intergenic CG1213 + chr3R_13_5840001 chr3R_5840001 RAL-356 741 chr3R 5927573 5927576 chr3R 5927809 5927816 pogo 4 239 3.5 4.5 4.0 0.8 243 chr3R 5927573 intron CG34113 - chr3R 5927694 intron CG34113 - chr3R 5927816 intron CG34113 - chr3R_4_5925001 chr3R_5925001 RAL-356 742 chr3R 5927578 5927591 chr3R 5927799 5927831 pogo 7 229 3.0 4.0 3.5 1.6 253 chr3R 5927578 intron CG34113 - chr3R 5927704 intron CG34113 - chr3R 5927831 intron CG34113 - chr3R_7_5925001 chr3R_5925001 RAL-356 743 chr3R 5931866 5931881 chr3R 5931927 5931930 5 63 5.0 2.0 3.5 1.1 64 chr3R 5931866 intron CG34113 - chr3R 5931898 intron CG34113 - chr3R 5931930 intron CG34113 - chr3R_5_5930001 chr3R_5930001 RAL-356 744 chr3R 5968183 5968199 chr3R 5968260 5968260 4 74 7.5 1.5 4.5 0.7 77 chr3R 5968183 intergenic not near genes chr3R 5968222 intergenic not near genes chr3R 5968260 intergenic not near genes chr3R_4_5965001 chr3R_5965001 RAL-356 745 chr3R 5988955 5988973 chr3R 5989026 5989055 5 75 2.0 2.0 2.0 1.7 100 chr3R 5988955 intergenic CR44927 + chr3R 5989005 intergenic CR44927 + chr3R 5989055 intergenic CR44927 + chr3R_5_5985001 chr3R_5985001 RAL-356 746 chr3R 6015962 6015991 chr3R 6024442 6024469 Tirant 4 8473 2.0 3.5 2.8 1.1 8507 chr3R 6015962 intergenic not near genes chr3R 6020216 intergenic not near genes chr3R 6024469 intergenic not near genes chr3R_4_6020001 chr3R_6020001 RAL-356 747 chr3R 6035143 6035181 chr3R 6035223 6035251 18 74 3.5 1.5 2.5 5.1 108 chr3R 6035143 intergenic not near genes chr3R 6035197 intergenic not near genes chr3R 6035251 intergenic not near genes chr3R_18_6035001 chr3R_6035001 RAL-356 748 chr3R 6062169 6062184 chr3R 6062266 6062289 4 108 1.5 2.0 1.8 1.4 120 chr3R 6062169 intergenic not near genes chr3R 6062229 intergenic not near genes chr3R 6062289 intergenic not near genes chr3R_4_6060001 chr3R_6060001 RAL-356 749 chr3R 6141923 6141952 chr3R 6141991 6142023 9 64 4.5 3.5 4.0 1.8 100 chr3R 6141923 intergenic not near genes chr3R 6141973 intergenic not near genes chr3R 6142023 intergenic not near genes chr3R_9_6140001 chr3R_6140001 RAL-356 750 chr3R 6154739 6154764 chr3R 6155071 6155082 5 328 1.0 1.5 1.2 2.3 343 chr3R 6154739 intron CG31559 - chr3R 6154910 intron CG31559 - chr3R 6155082 intron CG31559 - chr3R_5_6150001 chr3R_6150001 RAL-356 751 chr3R 6191172 6191196 chr3R 6191251 6191261 5 75 2.5 1.5 2.0 1.7 89 chr3R 6191172 intron NPFR + chr3R 6191216 intron NPFR + chr3R 6191261 intron NPFR + chr3R_5_6190001 chr3R_6190001 RAL-356 752 chr3R 6192632 6192659 chr3R 6192716 6192744 6 81 4.0 2.5 3.2 1.4 112 chr3R 6192632 exon NPFR + chr3R 6192688 intron NPFR + chr3R 6192744 intron NPFR + chr3R_6_6190001 chr3R_6190001 RAL-356 753 chr3R 6203981 6203999 chr3R 6204101 6204114 4 121 1.5 2.0 1.8 1.4 133 chr3R 6203981 intron Osi24 + chr3R 6204048 intron Osi24 + chr3R 6204114 intron Osi24 + chr3R_4_6200001 chr3R_6200001 RAL-356 754 chr3R 6206296 6206307 chr3R 6206513 6206515 BS 4 212 8.5 9.0 8.8 0.4 219 chr3R 6206296 exon Osi24 + chr3R 6206406 intron Osi24 + chr3R 6206515 intron Osi24 + chr3R_4_6205001 chr3R_6205001 RAL-356 755 chr3R 6316796 6316809 chr3R 6316871 6316886 5 80 2.0 4.0 3.0 1.2 90 chr3R 6316796 intron Osi17 + chr3R 6316841 intron Osi17 + chr3R 6316886 intron Osi17 + chr3R_5_6315001 chr3R_6315001 RAL-356 756 chr3R 6574398 6574402 chr3R 6574455 6574476 4 68 3.5 5.0 4.2 0.8 78 chr3R 6574398 intron dpr11 - chr3R 6574437 intron dpr11 - chr3R 6574476 intron dpr11 - chr3R_4_6570001 chr3R_6570001 RAL-356 757 chr3R 6582507 6582541 chr3R 6582587 6582607 10 74 2.5 1.5 2.0 3.3 100 chr3R 6582507 intron dpr11 - chr3R 6582557 intron dpr11 - chr3R 6582607 intron dpr11 - chr3R_10_6580001 chr3R_6580001 RAL-356 758 chr3R 6737505 6737526 chr3R 6739286 6739313 Doc 6 1784 4.0 2.5 3.2 1.4 1808 chr3R 6737505 intron pb - chr3R 6738409 intron pb - chr3R 6739313 intron pb - chr3R_6_6735001 chr3R_6735001 RAL-356 759 chr3R 6891257 6891358 chr3R 6891333 6891537 8 133 0.0 0.5 0.2 6.7 280 chr3R 6891257 intergenic not near genes chr3R 6891397 intergenic not near genes chr3R 6891537 intergenic not near genes chr3R_8_6890001 chr3R_6890001 RAL-356 760 chr3R 7092791 7092816 chr3R 7093347 7093364 18 558 2.5 5.5 4.0 3.6 573 chr3R 7092791 3` UTR CR43685 - chr3R 7093078 intron CR43685 - chr3R 7093364 3` UTR CR43685 - chr3R_18_7090001 chr3R_7090001 RAL-356 761 chr3R 7103289 7103306 chr3R 7103365 7103382 6 74 4.5 6.5 5.5 0.9 93 chr3R 7103289 intron Alh - chr3R 7103336 intron Alh - chr3R 7103382 intron Alh - chr3R_6_7100001 chr3R_7100001 RAL-356 762 chr3R 7103307 7103317 chr3R 7103362 7103368 4 62 5.0 5.0 5.0 0.7 61 chr3R 7103307 intron Alh - chr3R 7103338 intron Alh - chr3R 7103368 intron Alh - chr3R_4_7100001 chr3R_7100001 RAL-356 763 chr3R 7132854 7132874 chr3R 7132935 7132959 5 84 0.5 2.0 1.2 2.3 105 chr3R 7132854 intergenic CG31493 + chr3R 7132906 intergenic CG31493 + chr3R 7132959 intergenic CG31493 + chr3R_5_7130001 chr3R_7130001 RAL-356 764 chr3R 7147510 7147525 chr3R 7147582 7147614 5 73 4.0 1.5 2.8 1.3 104 chr3R 7147510 intron,intron CG2656 +,gfzf - chr3R 7147562 intron,intron CG2656 +,gfzf - chr3R 7147614 intron,intron CG2656 +,gfzf - chr3R_5_7145001 chr3R_7145001 RAL-356 765 chr3R 7320863 7320886 chr3R 7320955 7320970 6 92 2.0 3.0 2.5 1.7 107 chr3R 7320863 intergenic not near genes chr3R 7320916 intergenic not near genes chr3R 7320970 intergenic not near genes chr3R_6_7320001 chr3R_7320001 RAL-356 766 chr3R 7396074 7396088 chr3R 7396150 7396179 5 82 3.5 1.5 2.5 1.4 105 chr3R 7396074 intergenic not near genes chr3R 7396126 intergenic not near genes chr3R 7396179 intergenic not near genes chr3R_5_7395001 chr3R_7395001 RAL-356 767 chr3R 7428728 7428747 chr3R 7428892 7428923 6 168 1.0 2.0 1.5 2.4 195 chr3R 7428728 intergenic not near genes chr3R 7428826 intergenic not near genes chr3R 7428923 intergenic not near genes chr3R_6_7425001 chr3R_7425001 RAL-356 768 chr3R 7621553 7621564 chr3R 7621638 7621653 4 85 0.0 6.0 3.0 1.0 100 chr3R 7621553 intron CG34127 - chr3R 7621603 intron CG34127 - chr3R 7621653 intron CG34127 - chr3R_4_7620001 chr3R_7620001 RAL-356 769 chr3R 7660784 7660816 chr3R 7660875 7660880 6 83 1.5 1.0 1.2 2.7 96 chr3R 7660784 intron Nlg1 + chr3R 7660832 intron Nlg1 + chr3R 7660880 intron Nlg1 + chr3R_6_7660001 chr3R_7660001 RAL-356 770 chr3R 7809941 7809944 chr3R 7810002 7810023 5 75 1.0 3.5 2.2 1.6 82 chr3R 7809941 5` UTR CG2993 - chr3R 7809982 5` UTR CG2993 - chr3R 7810023 intergenic CG2993 - chr3R_5_7805001 chr3R_7805001 RAL-356 771 chr3R 7809947 7809952 chr3R 7810001 7810030 4 63 1.0 3.5 2.2 1.2 83 chr3R 7809947 5` UTR CG2993 - chr3R 7809988 5` UTR CG2993 - chr3R 7810030 intergenic CG2993 - chr3R_4_7805001 chr3R_7805001 RAL-356 772 chr3R 8200088 8200110 chr3R 8200151 8200176 5 60 1.5 3.0 2.2 1.6 88 chr3R 8200088 intergenic not near genes chr3R 8200132 intergenic not near genes chr3R 8200176 intergenic not near genes chr3R_5_8200001 chr3R_8200001 RAL-356 773 chr3R 8207555 8207581 chr3R 8208398 8208425 F-element 5 840 3.0 1.0 2.0 1.7 870 chr3R 8207555 intergenic not near genes chr3R 8207990 intergenic not near genes chr3R 8208425 intergenic not near genes chr3R_5_8205001 chr3R_8205001 RAL-356 774 chr3R 8339246 8339247 chr3R 21907534 21907536 19 13568288 18.5 28.0 23.2 0.8 13568290 chr3R 8339246 intergenic not near genes chr3R 15123391 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_19_15120001 chr3R_15120001 RAL-356 775 chr3R 8570490 8570509 chr3R 8575112 8575143 HMS-Beagle 5 4630 5.5 2.0 3.8 1.0 4653 chr3R 8570490 intergenic not near genes chr3R 8572816 intergenic not near genes chr3R 8575143 intergenic not near genes chr3R_5_8570001 chr3R_8570001 RAL-356 776 chr3R 8601781 8601799 chr3R 8610927 8610950 roo 4 9150 3.5 5.0 4.2 0.8 9169 chr3R 8601781 intron 5-HT2B + chr3R 8606366 intron 5-HT2B + chr3R 8610950 intron 5-HT2B + chr3R_4_8605001 chr3R_8605001 RAL-356 777 chr3R 8637244 8637266 chr3R 8637699 8637722 4 455 2.0 2.0 2.0 1.3 478 chr3R 8637244 intergenic not near genes chr3R 8637483 intergenic not near genes chr3R 8637722 intergenic not near genes chr3R_4_8635001 chr3R_8635001 RAL-356 778 chr3R 8685305 8685315 chr3R 8685405 8685415 4 97 1.0 2.0 1.5 1.6 110 chr3R 8685305 intron CR44937 - chr3R 8685360 intron CR44937 - chr3R 8685415 intron CR44937 - chr3R_4_8685001 chr3R_8685001 RAL-356 779 chr3R 8707357 8707392 chr3R 8709798 8709813 jockey 10 2434 3.0 8.0 5.5 1.5 2456 chr3R 8707357 intergenic not near genes chr3R 8708585 intergenic not near genes chr3R 8709813 intergenic not near genes chr3R_10_8705001 chr3R_8705001 RAL-356 780 chr3R 9066211 9066222 chr3R 9066271 9066282 7 66 3.5 3.5 3.5 1.6 71 chr3R 9066211 exon Ada + chr3R 9066246 exon Ada + chr3R 9066282 3` UTR Ada + chr3R_7_9065001 chr3R_9065001 RAL-356 781 chr3R 9171938 9171949 chr3R 9172289 9172313 4 359 2.0 3.0 2.5 1.1 375 chr3R 9171938 intron pum - chr3R 9172126 intron pum - chr3R 9172313 intron pum - chr3R_4_9170001 chr3R_9170001 RAL-356 782 chr3R 9278779 9278810 chr3R 9284037 9284062 Rt1a 8 5255 1.5 4.5 3.0 2.0 5283 chr3R 9278779 intergenic not near genes chr3R 9281420 intergenic not near genes chr3R 9284062 intergenic not near genes chr3R_8_9280001 chr3R_9280001 RAL-356 783 chr3R 9292494 9292501 chr3R 9292603 9292628 6 119 5.0 2.5 3.8 1.2 134 chr3R 9292494 intergenic not near genes chr3R 9292561 intergenic not near genes chr3R 9292628 intergenic not near genes chr3R_6_9290001 chr3R_9290001 RAL-356 784 chr3R 9319588 9319608 chr3R 9320003 9320026 jockey 12 423 3.0 1.5 2.2 3.8 438 chr3R 9319588 intron CG8861 - chr3R 9319807 intron CG8861 - chr3R 9320026 intron CG8861 - chr3R_12_9315001 chr3R_9315001 RAL-356 785 chr3R 9382842 9382849 chr3R 9382941 9382974 4 113 1.0 4.5 2.8 1.1 132 chr3R 9382842 intron FER - chr3R 9382908 intron FER - chr3R 9382974 intron FER - chr3R_4_9380001 chr3R_9380001 RAL-356 786 chr3R 9599813 9599834 chr3R 9599987 9599998 7 169 1.0 1.5 1.2 3.2 185 chr3R 9599813 intron CG8312 + chr3R 9599906 intron CG8312 + chr3R 9599998 intron CG8312 + chr3R_7_9595001 chr3R_9595001 RAL-356 787 chr3R 9601481 9601491 chr3R 9601581 9601584 4 101 1.5 1.5 1.5 1.6 103 chr3R 9601481 intron CG8312 + chr3R 9601532 intron CG8312 + chr3R 9601584 intron CG8312 + chr3R_4_9600001 chr3R_9600001 RAL-356 788 chr3R 9620956 9620956 chr3R 21907534 21907536 4 12286579 21.5 28.0 24.8 0.2 12286580 chr3R 9620956 intron CG8312 + chr3R 15764246 intergenic not near genes chr3R 21907536 intergenic CG6678 + chr3R_4_15760001 chr3R_15760001 RAL-356 789 chr3R 9647514 9647527 chr3R 9647752 9647773 7 239 6.5 3.5 5.0 1.2 259 chr3R 9647514 intron Dh44 + chr3R 9647644 intron Dh44 + chr3R 9647773 intron Dh44 + chr3R_7_9645001 chr3R_9645001 RAL-356 790 chr3R 9702272 9702290 chr3R 9702345 9702351 6 71 2.0 1.5 1.8 2.1 79 chr3R 9702272 intron Unc-115a - chr3R 9702312 intron Unc-115a - chr3R 9702351 intron Unc-115a - chr3R_6_9700001 chr3R_9700001 RAL-356 791 chr3R 9898789 9898814 chr3R 9898881 9898889 4 86 3.5 0.5 2.0 1.3 100 chr3R 9898789 intron Glut4EF + chr3R 9898839 intron Glut4EF + chr3R 9898889 intron Glut4EF + chr3R_4_9895001 chr3R_9895001 RAL-356 792 chr3R 10514356 10514379 chr3R 10514434 10514443 8 77 0.5 1.5 1.0 4.0 87 chr3R 10514356 intron hth - chr3R 10514400 intron hth - chr3R 10514443 intron hth - chr3R_8_10510001 chr3R_10510001 RAL-356 793 chr3R 10531875 10531888 chr3R 10531956 10531963 4 79 3.0 1.0 2.0 1.3 88 chr3R 10531875 intron hth - chr3R 10531919 intron hth - chr3R 10531963 intron hth - chr3R_4_10530001 chr3R_10530001 RAL-356 794 chr3R 10531889 10531898 chr3R 10531950 10531962 5 70 1.5 1.0 1.2 2.3 73 chr3R 10531889 intron hth - chr3R 10531926 intron hth - chr3R 10531962 intron hth - chr3R_5_10530001 chr3R_10530001 RAL-356 795 chr3R 10720632 10720656 chr3R 10720707 10720736 13 75 3.0 4.5 3.8 2.7 104 chr3R 10720632 intergenic not near genes chr3R 10720684 intergenic not near genes chr3R 10720736 intergenic not near genes chr3R_13_10720001 chr3R_10720001 RAL-356 796 chr3R 10785813 10785842 chr3R 10785891 10785908 5 69 2.0 1.0 1.5 2.0 95 chr3R 10785813 intron Rbp1 + chr3R 10785860 intron Rbp1 + chr3R 10785908 intron Rbp1 + chr3R_5_10785001 chr3R_10785001 RAL-356 797 chr3R 10911428 10911435 chr3R 10911813 10911820 5 385 10.5 16.0 13.2 0.4 392 chr3R 10911428 intergenic not near genes chr3R 10911624 intergenic not near genes chr3R 10911820 intergenic not near genes chr3R_5_10910001 chr3R_10910001 RAL-356 798 chr3R 10919697 10919713 chr3R 10919767 10919767 5 72 5.0 1.0 3.0 1.2 70 chr3R 10919697 intergenic not near genes chr3R 10919732 intergenic not near genes chr3R 10919767 intergenic not near genes chr3R_5_10915001 chr3R_10915001 RAL-356 799 chr3R 10924745 10924769 chr3R 10924836 10924843 9 87 2.0 5.5 3.8 1.9 98 chr3R 10924745 intergenic not near genes chr3R 10924794 intergenic not near genes chr3R 10924843 intergenic not near genes chr3R_9_10920001 chr3R_10920001 RAL-356 800 chr3R 11054573 11054599 chr3R 11054670 11054676 4 92 1.5 1.0 1.2 1.8 103 chr3R 11054573 intergenic not near genes chr3R 11054624 intergenic not near genes chr3R 11054676 intergenic not near genes chr3R_4_11050001 chr3R_11050001 RAL-356 801 chr3R 11078954 11078976 chr3R 11079034 11079051 6 77 1.5 3.0 2.2 1.9 97 chr3R 11078954 intergenic not near genes chr3R 11079002 intergenic not near genes chr3R 11079051 intergenic not near genes chr3R_6_11075001 chr3R_11075001 RAL-356 802 chr3R 11085462 11085489 chr3R 11085539 11085566 4 68 2.0 1.0 1.5 1.6 104 chr3R 11085462 3` UTR CR44940 - chr3R 11085514 intergenic CR44940 - chr3R 11085566 intergenic CR44940 - chr3R_4_11085001 chr3R_11085001 RAL-356 803 chr3R 11085787 11085806 chr3R 11086068 11086086 9 285 2.0 2.5 2.2 2.8 299 chr3R 11085787 intergenic CR44940 - chr3R 11085936 intergenic CR44940 - chr3R 11086086 intergenic not near genes chr3R_9_11085001 chr3R_11085001 RAL-356 804 chr3R 11174605 11174609 chr3R 11175319 11175323 4 713 21.5 23.5 22.5 0.2 718 chr3R 11174605 exon Ugt86Dj - chr3R 11174964 intron Ugt86Dj - chr3R 11175323 exon Ugt86Dj - chr3R_4_11170001 chr3R_11170001 RAL-356 805 chr3R 11263507 11263514 chr3R 11263590 11263597 4 82 2.5 3.0 2.8 1.1 90 chr3R 11263507 intergenic not near genes chr3R 11263552 intergenic not near genes chr3R 11263597 intergenic not near genes chr3R_4_11260001 chr3R_11260001 RAL-356 806 chr3R 11283055 11283073 chr3R 11283202 11283220 5 146 0.5 2.5 1.5 2.0 165 chr3R 11283055 intron CR31386 - chr3R 11283138 intron CR31386 - chr3R 11283220 intron CR31386 - chr3R_5_11280001 chr3R_11280001 RAL-356 807 chr3R 11694729 11694752 chr3R 11694822 11694829 5 88 2.5 2.5 2.5 1.4 100 chr3R 11694729 intergenic Fer3 - chr3R 11694779 intergenic Fer3 - chr3R 11694829 intergenic not near genes chr3R_5_11690001 chr3R_11690001 RAL-356 808 chr3R 11734170 11734188 chr3R 11734282 11734297 7 112 5.0 5.0 5.0 1.2 127 chr3R 11734170 intergenic not near genes chr3R 11734234 intergenic not near genes chr3R 11734297 intergenic not near genes chr3R_7_11730001 chr3R_11730001 RAL-356 809 chr3R 11834188 11834199 chr3R 11834252 11834281 10 75 4.5 4.0 4.2 1.9 93 chr3R 11834188 intron CG6959 - chr3R 11834234 intron CG6959 - chr3R 11834281 intron CG6959 - chr3R_10_11830001 chr3R_11830001 RAL-356 810 chr3R 11853437 11853469 chr3R 11853586 11853631 4 150 1.5 0.0 0.8 2.2 194 chr3R 11853437 intron CG6959 - chr3R 11853534 intron CG6959 - chr3R 11853631 intron CG6959 - chr3R_4_11850001 chr3R_11850001 RAL-356 811 chr3R 12082014 12082027 chr3R 12082071 12082086 6 62 3.0 2.5 2.8 1.6 72 chr3R 12082014 intron CG14741 - chr3R 12082050 intron CG14741 - chr3R 12082086 intron CG14741 - chr3R_6_12080001 chr3R_12080001 RAL-356 812 chr3R 12111908 12111914 chr3R 12111969 12111981 4 68 0.0 1.5 0.8 2.2 73 chr3R 12111908 intergenic dpr17 + chr3R 12111944 intergenic not near genes chr3R 12111981 intergenic not near genes chr3R_4_12110001 chr3R_12110001 RAL-356 813 chr3R 12344141 12344156 chr3R 12344208 12344232 5 74 2.0 1.5 1.8 1.8 91 chr3R 12344141 intergenic not near genes chr3R 12344186 intergenic not near genes chr3R 12344232 intergenic not near genes chr3R_5_12340001 chr3R_12340001 RAL-356 814 chr3R 12717410 12717418 chr3R 12717759 12717768 4 350 3.5 6.0 4.8 0.7 358 chr3R 12717410 intron Men - chr3R 12717589 intron Men - chr3R 12717768 intron Men - chr3R_4_12715001 chr3R_12715001 RAL-356 815 chr3R 12819027 12819047 chr3R 12819110 12819121 4 80 2.5 1.0 1.8 1.4 94 chr3R 12819027 intergenic not near genes chr3R 12819074 intergenic not near genes chr3R 12819121 intergenic not near genes chr3R_4_12815001 chr3R_12815001 RAL-356 816 chr3R 13075382 13075389 chr3R 13075451 13075464 4 73 1.5 0.5 1.0 2.0 82 chr3R 13075382 intron sim + chr3R 13075423 intron sim + chr3R 13075464 intron sim + chr3R_4_13075001 chr3R_13075001 RAL-356 817 chr3R 13143032 13143065 chr3R 13148609 13148624 mdg3 5 5564 2.5 6.0 4.2 1.0 5592 chr3R 13143032 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13145828 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13148624 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_5_13145001 chr3R_13145001 RAL-356 818 chr3R 13195951 13195982 chr3R 13196045 13196075 16 86 2.5 4.5 3.5 3.6 124 chr3R 13195951 intergenic not near genes chr3R 13196013 intergenic not near genes chr3R 13196075 intergenic not near genes chr3R_16_13195001 chr3R_13195001 RAL-356 819 chr3R 13206654 13206676 chr3R 13206890 13206904 4 234 2.0 4.5 3.2 1.0 250 chr3R 13206654 intergenic not near genes chr3R 13206779 intergenic not near genes chr3R 13206904 intergenic not near genes chr3R_4_13205001 chr3R_13205001 RAL-356 820 chr3R 13435387 13435419 chr3R 13435562 13435592 5 172 0.5 1.0 0.8 2.8 205 chr3R 13435387 intergenic yrt - chr3R 13435490 intergenic not near genes chr3R 13435592 intergenic not near genes chr3R_5_13435001 chr3R_13435001 RAL-356 821 chr3R 13525181 13525216 chr3R 13525282 13525299 12 94 2.5 0.0 1.2 5.5 118 chr3R 13525181 intergenic not near genes chr3R 13525240 intergenic not near genes chr3R 13525299 intergenic not near genes chr3R_12_13525001 chr3R_13525001 RAL-356 822 chr3R 13693028 13693029 chr3R 21907534 21907535 5 8214507 7.5 28.0 17.8 0.3 8214507 chr3R 13693028 3` UTR flfl + chr3R 17800282 exon CG17803 - chr3R 21907535 intergenic CG6678 + chr3R_5_17800001 chr3R_17800001 RAL-356 823 chr3R 13782070 13782087 chr3R 13782133 13782163 6 70 1.5 2.0 1.8 2.1 93 chr3R 13782070 3` UTR CG9286 + chr3R 13782116 intergenic CG9286 +,Dip-B + chr3R 13782163 intergenic CG9286 +,Dip-B + chr3R_6_13780001 chr3R_13780001 RAL-356 824 chr3R 13863683 13863711 chr3R 13863771 13863797 11 81 3.0 2.5 2.8 2.9 114 chr3R 13863683 intergenic not near genes chr3R 13863740 intergenic not near genes chr3R 13863797 intergenic not near genes chr3R_11_13860001 chr3R_13860001 RAL-356 825 chr3R 13948246 13948257 chr3R 13948310 13948335 4 67 1.5 1.0 1.2 1.8 89 chr3R 13948246 intergenic CG31517 + chr3R 13948290 intergenic CG31517 + chr3R 13948335 intergenic CG31517 + chr3R_4_13945001 chr3R_13945001 RAL-356 826 chr3R 14098691 14098701 chr3R 14098757 14098759 5 71 8.0 4.0 6.0 0.7 68 chr3R 14098691 intergenic not near genes chr3R 14098725 intergenic not near genes chr3R 14098759 intergenic not near genes chr3R_5_14095001 chr3R_14095001 RAL-356 827 chr3R 14546040 14546061 chr3R 14546115 14546121 4 69 3.0 0.5 1.8 1.4 81 chr3R 14546040 intron Pde6 - chr3R 14546080 intron Pde6 - chr3R 14546121 intron Pde6 - chr3R_4_14545001 chr3R_14545001 RAL-356 828 chr3R 14662324 14662337 chr3R 14662397 14662415 6 78 4.0 4.0 4.0 1.2 91 chr3R 14662324 intron Rad17 - chr3R 14662370 intron Rad17 - chr3R 14662415 exon Rad17 - chr3R_6_14660001 chr3R_14660001 RAL-356 829 chr3R 14704390 14704415 chr3R 14704461 14704491 10 68 1.5 0.0 0.8 5.6 101 chr3R 14704390 intron kibra - chr3R 14704440 intron kibra - chr3R 14704491 intron kibra - chr3R_10_14700001 chr3R_14700001 RAL-356 830 chr3R 14779084 14779093 chr3R 14779152 14779169 4 76 3.0 6.5 4.8 0.7 85 chr3R 14779084 intron jvl + chr3R 14779126 intron jvl + chr3R 14779169 intron jvl + chr3R_4_14775001 chr3R_14775001 RAL-356 831 chr3R 14796629 14796653 chr3R 14796705 14796728 4 74 4.0 2.5 3.2 1.0 99 chr3R 14796629 exon CG14855 + chr3R 14796678 exon CG14855 + chr3R 14796728 exon CG14855 + chr3R_4_14795001 chr3R_14795001 RAL-356 832 chr3R 14862756 14862783 chr3R 14862836 14862863 6 80 4.0 3.0 3.5 1.3 107 chr3R 14862756 intron btsz - chr3R 14862810 intron btsz - chr3R 14862863 intron btsz - chr3R_6_14860001 chr3R_14860001 RAL-356 833 chr3R 14869869 14869895 chr3R 14869960 14869982 4 90 2.0 6.5 4.2 0.8 113 chr3R 14869869 intron btsz - chr3R 14869926 intron btsz - chr3R 14869982 intron btsz - chr3R_4_14865001 chr3R_14865001 RAL-356 834 chr3R 14923731 14923746 chr3R 14923787 14923823 4 64 2.5 4.5 3.5 0.9 92 chr3R 14923731 3` UTR CR45598 - chr3R 14923777 intergenic CR45598 - chr3R 14923823 intergenic CR45598 - chr3R_4_14920001 chr3R_14920001 RAL-356 835 chr3R 15048346 15048377 chr3R 15048468 15048477 7 115 3.5 3.5 3.5 1.6 131 chr3R 15048346 intergenic not near genes chr3R 15048412 intergenic not near genes chr3R 15048477 intergenic not near genes chr3R_7_15045001 chr3R_15045001 RAL-356 836 chr3R 15088072 15088099 chr3R 15088170 15088197 5 98 5.5 0.0 2.8 1.3 125 chr3R 15088072 intron CG6966 - chr3R 15088134 intron CG6966 - chr3R 15088197 intron CG6966 - chr3R_5_15085001 chr3R_15085001 RAL-356 837 chr3R 15132056 15132068 chr3R 15135116 15135128 Juan 7 3059 20.5 14.0 17.2 0.4 3072 chr3R 15132056 intergenic CG42788 - chr3R 15133592 intergenic not near genes chr3R 15135128 intergenic CG6912 - chr3R_7_15130001 chr3R_15130001 RAL-356 838 chr3R 15132070 15132089 chr3R 15135108 15135134 Juan 11 3050 12.0 10.0 11.0 0.9 3064 chr3R 15132070 intergenic CG42788 - chr3R 15133602 intergenic not near genes chr3R 15135134 intergenic CG6912 - chr3R_11_15130001 chr3R_15130001 RAL-356 839 chr3R 15157010 15157038 chr3R 15157093 15157104 6 74 2.5 0.0 1.2 2.7 94 chr3R 15157010 intron Gyc88E + chr3R 15157057 intron Gyc88E + chr3R 15157104 intron Gyc88E + chr3R_6_15155001 chr3R_15155001 RAL-356 840 chr3R 15286987 15286988 chr3R 21907534 21907536 7 6620548 15.0 28.0 21.5 0.3 6620549 chr3R 15286987 intron Tm1 + chr3R 18597262 intron,exon qin +,CG14304 - chr3R 21907536 intergenic CG6678 + chr3R_7_18595001 chr3R_18595001 RAL-356 841 chr3R 15570153 15570176 chr3R 15570237 15570253 12 85 2.0 2.0 2.0 4.0 100 chr3R 15570153 intergenic not near genes chr3R 15570203 intergenic not near genes chr3R 15570253 intergenic not near genes chr3R_12_15570001 chr3R_15570001 RAL-356 842 chr3R 15601170 15601188 chr3R 15608692 15608709 412 4 7522 4.0 7.0 5.5 0.6 7539 chr3R 15601170 intergenic not near genes chr3R 15604940 intergenic not near genes chr3R 15608709 intergenic not near genes chr3R_4_15600001 chr3R_15600001 RAL-356 843 chr3R 15618749 15618764 chr3R 15626209 15626238 blood 5 7465 1.5 4.5 3.0 1.2 7489 chr3R 15618749 intergenic not near genes chr3R 15622494 intergenic not near genes chr3R 15626238 intergenic not near genes chr3R_5_15620001 chr3R_15620001 RAL-356 844 chr3R 15715026 15715049 chr3R 15715095 15715125 7 67 0.5 3.0 1.8 2.5 99 chr3R 15715026 intergenic CG31294 - chr3R 15715076 intergenic CG31294 - chr3R 15715125 intergenic CG31294 - chr3R_7_15715001 chr3R_15715001 RAL-356 845 chr3R 15718264 15718276 chr3R 15718589 15718606 6 336 4.0 2.0 3.0 1.5 342 chr3R 15718264 intergenic not near genes chr3R 15718435 intergenic not near genes chr3R 15718606 intergenic not near genes chr3R_6_15715001 chr3R_15715001 RAL-356 846 chr3R 15734169 15734210 chr3R 15734260 15734287 8 79 3.0 1.0 2.0 2.7 118 chr3R 15734169 intergenic not near genes chr3R 15734228 intergenic not near genes chr3R 15734287 intergenic not near genes chr3R_8_15730001 chr3R_15730001 RAL-356 847 chr3R 15790836 15790863 chr3R 15790952 15790964 6 108 11.0 9.0 10.0 0.5 128 chr3R 15790836 exon c(3)G - chr3R 15790900 intron c(3)G - chr3R 15790964 exon c(3)G - chr3R_6_15790001 chr3R_15790001 RAL-356 848 chr3R 15827627 15827636 chr3R 15827727 15827742 6 109 3.0 1.5 2.2 1.9 115 chr3R 15827627 intron,intron rec -,CG4576 + chr3R 15827684 intron,intron rec -,CG4576 + chr3R 15827742 intron,intron rec -,CG4576 + chr3R_6_15825001 chr3R_15825001 RAL-356 849 chr3R 15844113 15844130 chr3R 15844211 15844227 5 96 3.0 1.5 2.2 1.6 114 chr3R 15844113 3` UTR spn-E + chr3R 15844170 3` UTR spn-E + chr3R 15844227 3` UTR spn-E + chr3R_5_15840001 chr3R_15840001 RAL-356 850 chr3R 15942058 15942061 chr3R 15942814 15942814 4 755 6.5 7.0 6.8 0.5 756 chr3R 15942058 intron Sap47 + chr3R 15942436 intron Sap47 + chr3R 15942814 intron Sap47 + chr3R_4_15940001 chr3R_15940001 RAL-356 851 chr3R 15942070 15942083 chr3R 15942808 15942824 9 744 2.5 6.0 4.2 1.7 754 chr3R 15942070 intron Sap47 + chr3R 15942447 intron Sap47 + chr3R 15942824 intron Sap47 + chr3R_9_15940001 chr3R_15940001 RAL-356 852 chr3R 15984513 15984535 chr3R 15984605 15984631 9 96 0.5 2.0 1.2 4.1 118 chr3R 15984513 intergenic not near genes chr3R 15984572 intergenic not near genes chr3R 15984631 intergenic not near genes chr3R_9_15980001 chr3R_15980001 RAL-356 853 chr3R 16111447 16111465 chr3R 16111523 16111537 6 74 8.0 2.5 5.2 1.0 90 chr3R 16111447 intergenic not near genes chr3R 16111492 intergenic not near genes chr3R 16111537 intergenic not near genes chr3R_6_16110001 chr3R_16110001 RAL-356 854 chr3R 16472578 16472599 chr3R 16472652 16472674 10 69 11.0 9.5 10.2 0.9 96 chr3R 16472578 intergenic Gyc-89Da + chr3R 16472626 5` UTR Gyc-89Da + chr3R 16472674 5` UTR Gyc-89Da + chr3R_10_16470001 chr3R_16470001 RAL-356 855 chr3R 16496888 16496901 chr3R 16497020 16497046 10 135 2.0 2.0 2.0 3.3 158 chr3R 16496888 intergenic not near genes chr3R 16496967 intergenic not near genes chr3R 16497046 intergenic not near genes chr3R_10_16495001 chr3R_16495001 RAL-356 856 chr3R 16671500 16671531 chr3R 16671586 16671616 4 86 2.0 0.5 1.2 1.8 116 chr3R 16671500 intron Ubx - chr3R 16671558 intron Ubx - chr3R 16671616 intron Ubx - chr3R_4_16670001 chr3R_16670001 RAL-356 857 chr3R 16756317 16756350 chr3R 16762508 16762537 diver 10 6182 2.5 2.0 2.2 3.1 6220 chr3R 16756317 intron bxd - chr3R 16759427 intron bxd - chr3R 16762537 intron bxd - chr3R_10_16755001 chr3R_16755001 RAL-356 858 chr3R 16868741 16868749 chr3R 16868842 16868863 4 105 1.0 3.5 2.2 1.2 122 chr3R 16868741 intron iab-8 - chr3R 16868802 intron iab-8 - chr3R 16868863 intron iab-8 - chr3R_4_16865001 chr3R_16865001 RAL-356 859 chr3R 17121535 17121556 chr3R 17121730 17121751 5 195 2.0 0.0 1.0 2.5 216 chr3R 17121535 intron cher - chr3R 17121643 intron,exon cher -,CG42779 + chr3R 17121751 intron,exon cher -,CG42779 + chr3R_5_17120001 chr3R_17120001 RAL-356 860 chr3R 17355493 17355513 chr3R 17355571 17355589 5 75 5.0 3.0 4.0 1.0 96 chr3R 17355493 intron beat-IIa - chr3R 17355541 intron beat-IIa - chr3R 17355589 intron beat-IIa - chr3R_5_17355001 chr3R_17355001 RAL-356 861 chr3R 17432820 17432854 chr3R 17433000 17433022 7 174 0.5 3.5 2.0 2.3 202 chr3R 17432820 intron CG5873 + chr3R 17432921 intron CG5873 + chr3R 17433022 intron CG5873 + chr3R_7_17430001 chr3R_17430001 RAL-356 862 chr3R 17507083 17507100 chr3R 17507178 17507179 4 88 0.0 2.5 1.2 1.8 96 chr3R 17507083 intergenic not near genes chr3R 17507131 intergenic not near genes chr3R 17507179 intergenic not near genes chr3R_4_17505001 chr3R_17505001 RAL-356 863 chr3R 17925860 17925889 chr3R 17927318 17927356 hobo 11 1458 3.0 13.0 8.0 1.2 1496 chr3R 17925860 intron cpo + chr3R 17926608 intron cpo + chr3R 17927356 intron cpo + chr3R_11_17925001 chr3R_17925001 RAL-356 864 chr3R 18006448 18006458 chr3R 18006520 18006522 6 75 5.0 8.0 6.5 0.8 74 chr3R 18006448 intron cpo + chr3R 18006485 intron cpo + chr3R 18006522 intron cpo + chr3R_6_18005001 chr3R_18005001 RAL-356 865 chr3R 18032796 18032811 chr3R 18040457 18040471 opus 5 7661 0.0 0.5 0.2 4.2 7675 chr3R 18032796 intergenic not near genes chr3R 18036634 intergenic not near genes chr3R 18040471 intergenic not near genes chr3R_5_18035001 chr3R_18035001 RAL-356 866 chr3R 18108249 18108272 chr3R 18108341 18108347 5 87 3.0 4.5 3.8 1.0 98 chr3R 18108249 intron sr + chr3R 18108298 intron sr + chr3R 18108347 intron sr + chr3R_5_18105001 chr3R_18105001 RAL-356 867 chr3R 18394471 18394501 chr3R 18394548 18394576 4 72 2.5 1.0 1.8 1.4 105 chr3R 18394471 intron Vha100-2 - chr3R 18394524 intron Vha100-2 - chr3R 18394576 intron Vha100-2 - chr3R_4_18390001 chr3R_18390001 RAL-356 868 chr3R 18464330 18464338 chr3R 18464462 18464475 4 136 0.0 7.0 3.5 0.9 145 chr3R 18464330 intron fru - chr3R 18464402 intron fru - chr3R 18464475 intron fru - chr3R_4_18460001 chr3R_18460001 RAL-356 869 chr3R 18528393 18528400 chr3R 18528457 18528462 5 75 3.0 1.0 2.0 1.7 69 chr3R 18528393 intron fru - chr3R 18528428 intron fru - chr3R 18528462 intron fru - chr3R_5_18525001 chr3R_18525001 RAL-356 870 chr3R 18791503 18791521 chr3R 18791573 18791596 5 69 1.0 3.0 2.0 1.7 93 chr3R 18791503 intron CG7720 - chr3R 18791550 intron CG7720 - chr3R 18791596 intron CG7720 - chr3R_5_18790001 chr3R_18790001 RAL-356 871 chr3R 18812084 18812108 chr3R 18812155 18812179 16 73 4.0 7.0 5.5 2.5 95 chr3R 18812084 intron CG18208 - chr3R 18812132 intron CG18208 - chr3R 18812179 intron CG18208 - chr3R_16_18810001 chr3R_18810001 RAL-356 872 chr3R 18829923 18829935 chr3R 18830059 18830071 5 136 5.5 1.5 3.5 1.1 148 chr3R 18829923 intron CG18208 - chr3R 18829997 intron CG18208 - chr3R 18830071 intron CG18208 - chr3R_5_18825001 chr3R_18825001 RAL-356 873 chr3R 18829936 18829955 chr3R 18830058 18830079 7 123 1.5 1.0 1.2 3.2 143 chr3R 18829936 intron CG18208 - chr3R 18830008 intron CG18208 - chr3R 18830079 intron CG18208 - chr3R_7_18830001 chr3R_18830001 RAL-356 874 chr3R 18903167 18903178 chr3R 18903239 18903270 7 80 3.0 3.0 3.0 1.8 103 chr3R 18903167 intergenic CG34284 - chr3R 18903218 intergenic CG34284 - chr3R 18903270 intergenic CG34284 - chr3R_7_18900001 chr3R_18900001 RAL-356 875 chr3R 19106822 19106839 chr3R 19106911 19106913 4 82 7.0 0.5 3.8 0.8 91 chr3R 19106822 intron CG6040 + chr3R 19106868 intron CG6040 + chr3R 19106913 intron CG6040 + chr3R_4_19105001 chr3R_19105001 RAL-356 876 chr3R 19193004 19193009 chr3R 19197285 19197313 F-element 4 4293 0.0 3.0 1.5 1.6 4309 chr3R 19193004 intron CG31475 + chr3R 19195158 intron CG31475 + chr3R 19197313 intron CG31475 + chr3R_4_19195001 chr3R_19195001 RAL-356 877 chr3R 19340414 19340429 chr3R 19340478 19340483 4 63 1.0 1.5 1.2 1.8 69 chr3R 19340414 intergenic not near genes chr3R 19340448 intergenic not near genes chr3R 19340483 intergenic not near genes chr3R_4_19340001 chr3R_19340001 RAL-356 878 chr3R 19475242 19475270 chr3R 19475771 19475799 4 528 1.5 3.0 2.2 1.2 557 chr3R 19475242 intron Dys + chr3R 19475520 intron Dys + chr3R 19475799 intron Dys + chr3R_4_19475001 chr3R_19475001 RAL-356 879 chr3R 19561837 19561855 chr3R 19561901 19561907 7 67 5.0 3.5 4.2 1.3 70 chr3R 19561837 intron Dys + chr3R 19561872 intron Dys + chr3R 19561907 intron Dys + chr3R_7_19560001 chr3R_19560001 RAL-356 880 chr3R 19681600 19681629 chr3R 19681691 19681720 7 83 2.0 4.5 3.2 1.7 120 chr3R 19681600 intron Naam + chr3R 19681660 intron Naam + chr3R 19681720 intron Naam + chr3R_7_19680001 chr3R_19680001 RAL-356 881 chr3R 19702322 19702355 chr3R 19702404 19702422 7 76 3.0 5.0 4.0 1.4 100 chr3R 19702322 intergenic not near genes chr3R 19702372 intergenic not near genes chr3R 19702422 intergenic not near genes chr3R_7_19700001 chr3R_19700001 RAL-356 882 chr3R 19943889 19943906 chr3R 19943960 19943976 9 73 5.0 0.0 2.5 2.6 87 chr3R 19943889 intron Hs6st - chr3R 19943932 intron Hs6st - chr3R 19943976 intron Hs6st - chr3R_9_19940001 chr3R_19940001 RAL-356 883 chr3R 20020148 20020183 chr3R 20020290 20020308 14 130 3.0 1.5 2.2 4.4 160 chr3R 20020148 intron CG4433 - chr3R 20020228 intron CG4433 - chr3R 20020308 intron CG4433 - chr3R_14_20020001 chr3R_20020001 RAL-356 884 chr3R 20060630 20060655 chr3R 20060713 20060731 9 77 3.0 0.5 1.8 3.2 101 chr3R 20060630 intergenic not near genes chr3R 20060680 intergenic not near genes chr3R 20060731 intergenic not near genes chr3R_9_20060001 chr3R_20060001 RAL-356 885 chr3R 20143935 20143949 chr3R 20144026 20144041 4 94 2.5 4.5 3.5 0.9 106 chr3R 20143935 intergenic not near genes chr3R 20143988 intergenic not near genes chr3R 20144041 intergenic not near genes chr3R_4_20140001 chr3R_20140001 RAL-356 886 chr3R 20190555 20190589 chr3R 20190644 20190678 11 76 4.0 4.0 4.0 2.2 123 chr3R 20190555 intergenic not near genes chr3R 20190616 intergenic not near genes chr3R 20190678 intergenic not near genes chr3R_11_20190001 chr3R_20190001 RAL-356 887 chr3R 20282290 20282310 chr3R 20282357 20282385 7 67 0.0 2.5 1.2 3.2 95 chr3R 20282290 intron cic + chr3R 20282338 intron cic + chr3R 20282385 intron cic + chr3R_7_20280001 chr3R_20280001 RAL-356 888 chr3R 20312860 20312881 chr3R 20312944 20312946 4 75 0.0 0.5 0.2 3.3 86 chr3R 20312860 intron CG42668 + chr3R 20312903 intron CG42668 + chr3R 20312946 intron CG42668 + chr3R_4_20310001 chr3R_20310001 RAL-356 889 chr3R 20431751 20431781 chr3R 20431837 20431867 8 81 2.0 2.5 2.2 2.5 116 chr3R 20431751 intron Gfrl - chr3R 20431809 intron Gfrl - chr3R 20431867 intron Gfrl - chr3R_8_20430001 chr3R_20430001 RAL-356 890 chr3R 20516552 20516572 chr3R 20516896 20516910 6 341 1.0 2.5 1.8 2.1 358 chr3R 20516552 intergenic not near genes chr3R 20516731 intergenic not near genes chr3R 20516910 intergenic not near genes chr3R_6_20515001 chr3R_20515001 RAL-356 891 chr3R 20564130 20564156 chr3R 20564478 20564507 8 346 5.0 4.0 4.5 1.5 377 chr3R 20564130 intron CG5191 + chr3R 20564318 intron CG5191 + chr3R 20564507 intron CG5191 + chr3R_8_20560001 chr3R_20560001 RAL-356 892 chr3R 20596196 20596214 chr3R 20596283 20596301 4 87 0.0 3.0 1.5 1.6 105 chr3R 20596196 intron bon + chr3R 20596248 intron bon + chr3R 20596301 intron bon + chr3R_4_20595001 chr3R_20595001 RAL-356 893 chr3R 20707747 20707773 chr3R 20707962 20707988 5 208 1.5 0.5 1.0 2.5 241 chr3R 20707747 intron Oamb - chr3R 20707868 intron Oamb - chr3R 20707988 intron Oamb - chr3R_5_20705001 chr3R_20705001 RAL-356 894 chr3R 20722862 20722885 chr3R 20722979 20723004 5 122 1.5 2.0 1.8 1.8 142 chr3R 20722862 intergenic not near genes chr3R 20722933 intergenic not near genes chr3R 20723004 intergenic not near genes chr3R_5_20720001 chr3R_20720001 RAL-356 895 chr3R 20854507 20854517 chr3R 20859283 20859293 Doc 5 4778 1.0 5.0 3.0 1.2 4786 chr3R 20854507 intron Ir93a - chr3R 20856900 intron Ir93a - chr3R 20859293 exon Ir93a - chr3R_5_20855001 chr3R_20855001 RAL-356 896 chr3R 20870251 20870270 chr3R 20870336 20870355 8 82 5.5 6.0 5.8 1.2 104 chr3R 20870251 intergenic not near genes chr3R 20870303 intergenic not near genes chr3R 20870355 intergenic not near genes chr3R_8_20870001 chr3R_20870001 RAL-356 897 chr3R 20870273 20870284 chr3R 20870334 20870354 9 77 4.0 5.5 4.8 1.6 81 chr3R 20870273 intergenic not near genes chr3R 20870314 intergenic not near genes chr3R 20870354 intergenic not near genes chr3R_9_20870001 chr3R_20870001 RAL-356 898 chr3R 20896727 20896729 chr3R 20901261 20901293 9 4544 10.5 26.0 18.2 0.5 4566 chr3R 20896727 exon CG10830 - chr3R 20899010 intergenic not near genes chr3R 20901293 intergenic not near genes chr3R_9_20895001 chr3R_20895001 RAL-356 899 chr3R 20901343 20901376 chr3R 20901428 20901444 9 79 3.0 4.0 3.5 2.0 101 chr3R 20901343 intergenic not near genes chr3R 20901394 intergenic not near genes chr3R 20901444 intergenic not near genes chr3R_9_20900001 chr3R_20900001 RAL-356 900 chr3R 20911640 20911650 chr3R 20911714 20911714 7 76 4.5 3.5 4.0 1.4 74 chr3R 20911640 3` UTR,5` UTR CG31191 -,CR44106 + chr3R 20911677 3` UTR,5` UTR CG31191 -,CR44106 + chr3R 20911714 3` UTR,5` UTR CG31191 -,CR44106 + chr3R_7_20910001 chr3R_20910001 RAL-356 901 chr3R 20979492 20979512 chr3R 20979567 20979588 5 70 3.5 2.0 2.8 1.3 96 chr3R 20979492 intron Calx + chr3R 20979540 intron Calx + chr3R 20979588 intron Calx + chr3R_5_20975001 chr3R_20975001 RAL-356 902 chr3R 21007620 21007636 chr3R 21007693 21007715 7 75 4.0 1.5 2.8 1.8 95 chr3R 21007620 intron Calx + chr3R 21007668 intron Calx + chr3R 21007715 intron Calx + chr3R_7_21005001 chr3R_21005001 RAL-356 903 chr3R 21014035 21014040 chr3R 21014103 21014104 4 71 2.5 1.5 2.0 1.3 69 chr3R 21014035 3` UTR Calx + chr3R 21014070 3` UTR Calx + chr3R 21014104 3` UTR Calx + chr3R_4_21010001 chr3R_21010001 RAL-356 904 chr3R 21141694 21141701 chr3R 21150157 21150166 Tirant 5 8463 6.5 8.0 7.2 0.6 8472 chr3R 21141694 intron SNF4Agamma + chr3R 21145930 intron SNF4Agamma + chr3R 21150166 intron SNF4Agamma + chr3R_5_21145001 chr3R_21145001 RAL-356 905 chr3R 21154565 21154586 chr3R 21154758 21154801 6 210 3.0 0.0 1.5 2.4 236 chr3R 21154565 intron SNF4Agamma + chr3R 21154683 intron SNF4Agamma + chr3R 21154801 intron SNF4Agamma + chr3R_6_21150001 chr3R_21150001 RAL-356 906 chr3R 21163246 21163275 chr3R 21163324 21163339 10 74 2.5 3.0 2.8 2.6 93 chr3R 21163246 intron SNF4Agamma + chr3R 21163292 intron SNF4Agamma + chr3R 21163339 intron SNF4Agamma + chr3R_10_21160001 chr3R_21160001 RAL-356 907 chr3R 21472023 21472035 chr3R 21472097 21472116 4 77 5.0 3.0 4.0 0.8 93 chr3R 21472023 intergenic not near genes chr3R 21472070 intergenic not near genes chr3R 21472116 intergenic not near genes chr3R_4_21470001 chr3R_21470001 RAL-356 908 chr3R 21518258 21518271 chr3R 21518335 21518340 4 69 0.0 3.5 1.8 1.4 82 chr3R 21518258 intergenic not near genes chr3R 21518299 intergenic not near genes chr3R 21518340 intergenic not near genes chr3R_4_21515001 chr3R_21515001 RAL-356 909 chr3R 21519992 21520137 chr3R 21520079 21520225 4 92 0.5 0.0 0.2 3.3 233 chr3R 21519992 intergenic not near genes chr3R 21520108 intergenic not near genes chr3R 21520225 intergenic not near genes chr3R_4_21520001 chr3R_21520001 RAL-356 910 chr3R 21522700 21522739 chr3R 21522783 21522811 8 78 0.0 2.5 1.2 3.6 111 chr3R 21522700 intron CG7956 + chr3R 21522756 intron CG7956 + chr3R 21522811 exon CG7956 + chr3R_8_21520001 chr3R_21520001 RAL-356 911 chr3R 21734880 21734889 chr3R 21734941 21734951 4 64 0.5 1.0 0.8 2.2 71 chr3R 21734880 intergenic not near genes chr3R 21734916 intergenic not near genes chr3R 21734951 intergenic not near genes chr3R_4_21730001 chr3R_21730001 RAL-356 912 chr3R 21761130 21761150 chr3R 21768511 21768521 mdg1 6 7379 4.0 4.0 4.0 1.2 7391 chr3R 21761130 exon CG42335 + chr3R 21764826 intron CG42335 + chr3R 21768521 exon CG42335 + chr3R_6_21760001 chr3R_21760001 RAL-356 913 chr3R 8339246 8339247 chr3R 21907534 21907534 8 13568288 18.5 28.0 23.2 0.3 13568288 chr3R 8339246 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907534 intergenic CG6678 + chr3R_8_15120001 chr3R_15120001 RAL-356 914 chr3R 21907534 21907534 chr3R 28831801 28831803 17 6924268 27.5 18.0 22.8 0.7 6924269 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831803 intron WASp - chr3R_17_25365001 chr3R_25365001 RAL-356 915 chr3R 8339246 8339247 chr3R 21907535 21907535 7 13568288 18.5 29.0 23.8 0.3 13568289 chr3R 8339246 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907535 intergenic CG6678 + chr3R_7_15120001 chr3R_15120001 RAL-356 916 chr3R 21907535 21907535 chr3R 24389465 24389465 5 2481930 28.0 9.5 18.8 0.3 2481930 chr3R 21907535 intergenic CG6678 + chr3R 23148500 intergenic not near genes chr3R 24389465 intron CG5768 - chr3R_5_23145001 chr3R_23145001 RAL-356 917 chr3R 21907535 21907535 chr3R 28831801 28831802 25 6924267 28.0 18.0 23.0 1.0 6924267 chr3R 21907535 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_25_25365001 chr3R_25365001 RAL-356 918 chr3R 8339246 8339247 chr3R 21907536 21907536 5 13568289 18.5 28.5 23.5 0.2 13568290 chr3R 8339246 intergenic not near genes chr3R 15123391 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_5_15120001 chr3R_15120001 RAL-356 919 chr3R 21907536 21907536 chr3R 28831801 28831802 29 6924266 28.0 18.0 23.0 1.2 6924266 chr3R 21907536 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831802 intron WASp - chr3R_29_25365001 chr3R_25365001 RAL-356 920 chr3R 21952142 21952167 chr3R 21952220 21952240 8 74 2.0 2.5 2.2 2.5 98 chr3R 21952142 intron Eip93F + chr3R 21952191 intron Eip93F + chr3R 21952240 intron Eip93F + chr3R_8_21950001 chr3R_21950001 RAL-356 921 chr3R 22055578 22055587 chr3R 22055748 22055765 7 179 1.0 2.5 1.8 2.5 187 chr3R 22055578 intron how + chr3R 22055672 intron how + chr3R 22055765 intron how + chr3R_7_22055001 chr3R_22055001 RAL-356 922 chr3R 22114253 22114287 chr3R 22114417 22114432 8 158 3.0 0.0 1.5 3.2 179 chr3R 22114253 exon Ir94a + chr3R 22114342 exon Ir94a + chr3R 22114432 exon Ir94a + chr3R_8_22110001 chr3R_22110001 RAL-356 923 chr3R 22428576 22428608 chr3R 22428652 22428684 12 72 2.5 3.0 2.8 3.2 108 chr3R 22428576 intron CG13847 - chr3R 22428630 intron CG13847 - chr3R 22428684 intron CG13847 - chr3R_12_22425001 chr3R_22425001 RAL-356 924 chr3R 22450547 22450579 chr3R 22453186 22453199 NOF 7 2635 3.0 4.0 3.5 1.6 2652 chr3R 22450547 intron CG34376 + chr3R 22451873 intron CG34376 + chr3R 22453199 intron CG34376 + chr3R_7_22450001 chr3R_22450001 RAL-356 925 chr3R 22538457 22538471 chr3R 22538528 22538531 5 70 4.5 1.0 2.8 1.3 74 chr3R 22538457 intron CG5326 - chr3R 22538494 intron CG5326 - chr3R 22538531 intron CG5326 - chr3R_5_22535001 chr3R_22535001 RAL-356 926 chr3R 22769099 22769106 chr3R 22769167 22769169 9 72 5.5 3.0 4.2 1.7 70 chr3R 22769099 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769134 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769169 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R_9_22765001 chr3R_22765001 RAL-356 927 chr3R 22794522 22794535 chr3R 22794587 22794597 5 63 0.5 4.0 2.2 1.6 75 chr3R 22794522 intergenic CG7029 + chr3R 22794560 intergenic not near genes chr3R 22794597 intergenic not near genes chr3R_5_22790001 chr3R_22790001 RAL-356 928 chr3R 22887124 22887147 chr3R 22887256 22887277 8 132 2.5 5.5 4.0 1.6 153 chr3R 22887124 intergenic not near genes chr3R 22887200 intergenic not near genes chr3R 22887277 intergenic not near genes chr3R_8_22885001 chr3R_22885001 RAL-356 929 chr3R 22919175 22919186 chr3R 22919257 22919279 5 87 2.5 4.0 3.2 1.2 104 chr3R 22919175 intron klg + chr3R 22919227 intron klg + chr3R 22919279 intron klg + chr3R_5_22915001 chr3R_22915001 RAL-356 930 chr3R 22927883 22927906 chr3R 22927962 22927987 5 81 3.0 3.5 3.2 1.2 104 chr3R 22927883 intron klg + chr3R 22927935 intron klg + chr3R 22927987 intron klg + chr3R_5_22925001 chr3R_22925001 RAL-356 931 chr3R 22977091 22977103 chr3R 22977172 22977179 6 84 3.0 2.0 2.5 1.7 88 chr3R 22977091 intergenic CG17244 + chr3R 22977135 intergenic CG17244 + chr3R 22977179 intergenic CG17244 + chr3R_6_22975001 chr3R_22975001 RAL-356 932 chr3R 23291255 23291267 chr3R 23291336 23291353 4 84 6.0 3.0 4.5 0.7 98 chr3R 23291255 3` UTR pnt - chr3R 23291304 3` UTR pnt - chr3R 23291353 3` UTR pnt - chr3R_4_23290001 chr3R_23290001 RAL-356 933 chr3R 23291269 23291283 chr3R 23291335 23291365 4 77 3.0 2.0 2.5 1.1 96 chr3R 23291269 3` UTR pnt - chr3R 23291317 3` UTR pnt - chr3R 23291365 exon pnt - chr3R_4_23290001 chr3R_23290001 RAL-356 934 chr3R 23338900 23338915 chr3R 23338974 23338979 4 70 4.0 2.5 3.2 1.0 79 chr3R 23338900 intron pnt - chr3R 23338940 intron pnt - chr3R 23338979 intron pnt - chr3R_4_23335001 chr3R_23335001 RAL-356 935 chr3R 23446293 23446304 chr3R 23446355 23446382 5 70 5.0 5.0 5.0 0.8 89 chr3R 23446293 intron CG4374 - chr3R 23446338 intron CG4374 - chr3R 23446382 intron CG4374 - chr3R_5_23445001 chr3R_23445001 RAL-356 936 chr3R 23528276 23528285 chr3R 23528345 23528374 7 84 2.0 5.5 3.8 1.5 98 chr3R 23528276 intron CG10175 - chr3R 23528325 intron CG10175 - chr3R 23528374 intron CG10175 - chr3R_7_23525001 chr3R_23525001 RAL-356 937 chr3R 23536948 23536979 chr3R 23537130 23537156 7 178 2.0 2.0 2.0 2.3 208 chr3R 23536948 intergenic CG10168 -,CG16732 - chr3R 23537052 exon CG10168 - chr3R 23537156 exon CG10168 - chr3R_7_23535001 chr3R_23535001 RAL-356 938 chr3R 23548095 23548102 chr3R 23548380 23548388 7 290 1.5 7.0 4.2 1.3 293 chr3R 23548095 intergenic not near genes chr3R 23548242 intergenic not near genes chr3R 23548388 intergenic not near genes chr3R_7_23545001 chr3R_23545001 RAL-356 939 chr3R 23612879 23612899 chr3R 23612989 23612998 4 106 2.5 4.0 3.2 1.0 119 chr3R 23612879 intron CG31145 - chr3R 23612938 intron CG31145 - chr3R 23612998 intron CG31145 - chr3R_4_23610001 chr3R_23610001 RAL-356 940 chr3R 23684714 23684729 chr3R 23685183 23685215 roo 8 470 3.0 10.5 6.8 1.0 501 chr3R 23684714 intron CG18754 + chr3R 23684964 intron CG18754 + chr3R 23685215 exon CG18754 + chr3R_8_23680001 chr3R_23680001 RAL-356 941 chr3R 23873736 23873754 chr3R 23873800 23873810 7 68 1.0 4.5 2.8 1.8 74 chr3R 23873736 intron Pli - chr3R 23873773 intron Pli - chr3R 23873810 intron Pli - chr3R_7_23870001 chr3R_23870001 RAL-356 942 chr3R 23944910 23944935 chr3R 23944995 23945016 9 82 2.5 4.0 3.2 2.1 106 chr3R 23944910 intron CG12268 - chr3R 23944963 intron CG12268 - chr3R 23945016 exon CG12268 - chr3R_9_23940001 chr3R_23940001 RAL-356 943 chr3R 24072087 24072115 chr3R 24072523 24072529 jockey 6 426 6.5 0.0 3.2 1.4 442 chr3R 24072087 intron 4EHP - chr3R 24072308 intron 4EHP - chr3R 24072529 intron 4EHP - chr3R_6_24070001 chr3R_24070001 RAL-356 944 chr3R 24076932 24076946 chr3R 24078380 24078399 hobo 6 1460 3.5 6.0 4.8 1.0 1467 chr3R 24076932 intron 4EHP - chr3R 24077666 intron 4EHP - chr3R 24078399 intron 4EHP - chr3R_6_24075001 chr3R_24075001 RAL-356 945 chr3R 24207232 24207246 chr3R 24212289 24212321 flea 4 5066 3.5 2.0 2.8 1.1 5089 chr3R 24207232 intron twin - chr3R 24209776 intron twin - chr3R 24212321 intron twin - chr3R_4_24205001 chr3R_24205001 RAL-356 946 chr3R 24421060 24421069 chr3R 24421124 24421133 4 69 2.0 5.5 3.8 0.8 73 chr3R 24421060 intron nAChRalpha1 - chr3R 24421096 intron nAChRalpha1 - chr3R 24421133 intron nAChRalpha1 - chr3R_4_24420001 chr3R_24420001 RAL-356 947 chr3R 24433477 24433501 chr3R 24433556 24433580 5 79 0.5 3.0 1.8 1.8 103 chr3R 24433477 intron nAChRalpha1 - chr3R 24433528 intron nAChRalpha1 - chr3R 24433580 intron nAChRalpha1 - chr3R_5_24430001 chr3R_24430001 RAL-356 948 chr3R 24493281 24493309 chr3R 24493505 24493531 BS 6 224 2.0 4.0 3.0 1.5 250 chr3R 24493281 intergenic not near genes chr3R 24493406 intergenic not near genes chr3R 24493531 intergenic not near genes chr3R_6_24490001 chr3R_24490001 RAL-356 949 chr3R 24527807 24527835 chr3R 24527894 24527926 6 88 0.0 1.5 0.8 3.3 119 chr3R 24527807 intergenic CG6607 +,CG13618 + chr3R 24527866 intergenic CG6607 +,CG13618 + chr3R 24527926 intergenic CG6607 +,CG13618 + chr3R_6_24525001 chr3R_24525001 RAL-356 950 chr3R 24735030 24735050 chr3R 24735117 24735123 10 84 9.0 5.5 7.2 1.2 93 chr3R 24735030 intron tok + chr3R 24735076 intron tok + chr3R 24735123 intron tok + chr3R_10_24735001 chr3R_24735001 RAL-356 951 chr3R 24743047 24743062 chr3R 24743119 24743147 7 76 2.0 1.5 1.8 2.5 100 chr3R 24743047 intron tok + chr3R 24743097 intron tok + chr3R 24743147 intron tok + chr3R_7_24740001 chr3R_24740001 RAL-356 952 chr3R 24927129 24927155 chr3R 24931916 24931946 Doc 7 4783 3.0 2.5 2.8 1.8 4817 chr3R 24927129 intergenic Trf4-2 + chr3R 24929538 intergenic not near genes chr3R 24931946 intergenic CG11771 + chr3R_7_24925001 chr3R_24925001 RAL-356 953 chr3R 24974923 24974931 chr3R 24974996 24975007 5 74 4.0 6.0 5.0 0.8 84 chr3R 24974923 intergenic not near genes chr3R 24974965 intergenic not near genes chr3R 24975007 intergenic not near genes chr3R_5_24970001 chr3R_24970001 RAL-356 954 chr3R 24975371 24975398 chr3R 24975451 24975459 13 76 5.0 4.0 4.5 2.4 88 chr3R 24975371 intergenic not near genes chr3R 24975415 intergenic not near genes chr3R 24975459 intergenic not near genes chr3R_13_24975001 chr3R_24975001 RAL-356 955 chr3R 25159507 25159513 chr3R 25159595 25159601 4 88 2.0 2.0 2.0 1.3 94 chr3R 25159507 intergenic not near genes chr3R 25159554 intergenic not near genes chr3R 25159601 intergenic not near genes chr3R_4_25155001 chr3R_25155001 RAL-356 956 chr3R 25159514 25159538 chr3R 25159593 25159611 5 78 0.0 1.5 0.8 2.8 97 chr3R 25159514 intergenic not near genes chr3R 25159562 intergenic not near genes chr3R 25159611 intergenic not near genes chr3R_5_25155001 chr3R_25155001 RAL-356 957 chr3R 25296170 25296197 chr3R 25296249 25296272 6 72 2.0 2.5 2.2 1.9 102 chr3R 25296170 3` UTR CG31097 - chr3R 25296221 3` UTR CG31097 - chr3R 25296272 3` UTR CG31097 - chr3R_6_25295001 chr3R_25295001 RAL-356 958 chr3R 25535001 25535017 chr3R 25535090 25535099 5 85 1.5 2.0 1.8 1.8 98 chr3R 25535001 intron msi + chr3R 25535050 intron msi + chr3R 25535099 intron msi + chr3R_5_25535001 chr3R_25535001 RAL-356 959 chr3R 25696335 25696346 chr3R 25696403 25696421 9 71 4.5 3.5 4.0 1.8 86 chr3R 25696335 intergenic not near genes chr3R 25696378 intergenic not near genes chr3R 25696421 intergenic not near genes chr3R_9_25695001 chr3R_25695001 RAL-356 960 chr3R 25832702 25832724 chr3R 25841871 25841902 roo 10 9175 5.5 5.0 5.2 1.6 9200 chr3R 25832702 exon alpha4GT2 + chr3R 25837302 intron alpha4GT2 + chr3R 25841902 exon alpha4GT2 + chr3R_10_25835001 chr3R_25835001 RAL-356 961 chr3R 25900877 25900909 chr3R 25903595 25903629 9 2724 39.5 33.0 36.2 0.2 2752 chr3R 25900877 exon CG31091 + chr3R 25902253 intergenic CG31091 +,CG31089 + chr3R 25903629 exon,intron CG31089 +,CR43259 - chr3R_9_25900001 chr3R_25900001 RAL-356 962 chr3R 26064964 26064975 chr3R 26065045 26065056 4 81 6.5 12.0 9.2 0.4 92 chr3R 26064964 intergenic not near genes chr3R 26065010 intergenic not near genes chr3R 26065056 intergenic not near genes chr3R_4_26065001 chr3R_26065001 RAL-356 963 chr3R 26065446 26065471 chr3R 26065522 26065547 6 75 7.0 2.5 4.8 1.0 101 chr3R 26065446 intergenic not near genes chr3R 26065496 intergenic not near genes chr3R 26065547 intergenic not near genes chr3R_6_26065001 chr3R_26065001 RAL-356 964 chr3R 26121968 26121981 chr3R 26122048 26122074 5 88 0.5 3.5 2.0 1.7 106 chr3R 26121968 intron CG31324 + chr3R 26122021 intron CG31324 + chr3R 26122074 intron CG31324 + chr3R_5_26120001 chr3R_26120001 RAL-356 965 chr3R 26126272 26126282 chr3R 26126374 26126381 4 101 4.5 2.0 3.2 1.0 109 chr3R 26126272 intron CG31324 + chr3R 26126326 intron CG31324 + chr3R 26126381 intron CG31324 + chr3R_4_26125001 chr3R_26125001 RAL-356 966 chr3R 26241422 26241434 chr3R 26241499 26241514 5 80 4.0 4.0 4.0 1.0 92 chr3R 26241422 intron CR42745 + chr3R 26241468 intron CR42745 + chr3R 26241514 intron CR42745 + chr3R_5_26240001 chr3R_26240001 RAL-356 967 chr3R 26265821 26265847 chr3R 26265901 26265917 14 80 4.0 4.5 4.2 2.7 96 chr3R 26265821 intron CG6154 + chr3R 26265869 intron CG6154 + chr3R 26265917 intron CG6154 + chr3R_14_26265001 chr3R_26265001 RAL-356 968 chr3R 26294735 26294748 chr3R 26294793 26294808 6 65 3.0 1.0 2.0 2.0 73 chr3R 26294735 intergenic not near genes chr3R 26294772 intergenic not near genes chr3R 26294808 intergenic not near genes chr3R_6_26290001 chr3R_26290001 RAL-356 969 chr3R 26325691 26325707 chr3R 26325771 26325776 4 76 4.5 7.5 6.0 0.6 85 chr3R 26325691 intron CG33970 + chr3R 26325734 intron CG33970 + chr3R 26325776 intron CG33970 + chr3R_4_26325001 chr3R_26325001 RAL-356 970 chr3R 26376331 26376357 chr3R 26385487 26385517 roo 6 9159 2.5 1.5 2.0 2.0 9186 chr3R 26376331 intergenic not near genes chr3R 26380924 intergenic not near genes chr3R 26385517 intergenic not near genes chr3R_6_26380001 chr3R_26380001 RAL-356 971 chr3R 26456667 26456674 chr3R 26456720 26456735 5 59 1.5 5.0 3.2 1.2 68 chr3R 26456667 intergenic CG14237 + chr3R 26456701 intergenic CG14237 + chr3R 26456735 intergenic CG14237 + chr3R_5_26455001 chr3R_26455001 RAL-356 972 chr3R 26529355 26529379 chr3R 26529438 26529444 6 77 1.0 2.5 1.8 2.1 89 chr3R 26529355 intron plum - chr3R 26529400 intron plum - chr3R 26529444 intron plum - chr3R_6_26525001 chr3R_26525001 RAL-356 973 chr3R 26558345 26558360 chr3R 26565637 26565669 Stalker4 5 7303 2.5 3.5 3.0 1.2 7324 chr3R 26558345 intron scrib + chr3R 26562007 intron scrib + chr3R 26565669 intron scrib + chr3R_5_26560001 chr3R_26560001 RAL-356 974 chr3R 26575029 26575039 chr3R 26575085 26575118 12 67 1.0 3.5 2.2 3.8 89 chr3R 26575029 exon scrib + chr3R 26575074 intron scrib + chr3R 26575118 intron scrib + chr3R_12_26575001 chr3R_26575001 RAL-356 975 chr3R 26651535 26651545 chr3R 26651607 26651629 5 76 3.0 2.0 2.5 1.4 94 chr3R 26651535 intron beat-VII - chr3R 26651582 intron beat-VII - chr3R 26651629 intron beat-VII - chr3R_5_26650001 chr3R_26650001 RAL-356 976 chr3R 26654229 26654242 chr3R 26654573 26654587 5 343 5.0 3.0 4.0 1.0 358 chr3R 26654229 intron beat-VII - chr3R 26654408 intron beat-VII - chr3R 26654587 intron beat-VII - chr3R_5_26650001 chr3R_26650001 RAL-356 977 chr3R 26753370 26753385 chr3R 26753440 26753455 7 75 2.5 5.0 3.8 1.5 85 chr3R 26753370 intergenic not near genes chr3R 26753412 intergenic not near genes chr3R 26753455 intergenic not near genes chr3R_7_26750001 chr3R_26750001 RAL-356 978 chr3R 26770240 26770266 chr3R 26770317 26770328 9 73 3.0 2.5 2.8 2.4 88 chr3R 26770240 intergenic CR45563 + chr3R 26770284 intergenic CR45563 + chr3R 26770328 intergenic CR45563 + chr3R_9_26770001 chr3R_26770001 RAL-356 979 chr3R 26810573 26810582 chr3R 26811058 26811063 roo 4 484 1.5 8.5 5.0 0.7 490 chr3R 26810573 intron Tl + chr3R 26810818 intron Tl + chr3R 26811063 intron Tl + chr3R_4_26810001 chr3R_26810001 RAL-356 980 chr3R 26845577 26845606 chr3R 26845650 26845666 15 73 3.5 5.0 4.2 2.9 89 chr3R 26845577 intron Lerp - chr3R 26845622 intron Lerp - chr3R 26845666 intron Lerp - chr3R_15_26845001 chr3R_26845001 RAL-356 981 chr3R 27028729 27028755 chr3R 27028802 27028833 5 74 0.0 2.5 1.2 2.3 104 chr3R 27028729 intron RYa-R + chr3R 27028781 intron RYa-R + chr3R 27028833 intron RYa-R + chr3R_5_27025001 chr3R_27025001 RAL-356 982 chr3R 27029180 27029197 chr3R 27029246 27029258 6 66 4.5 6.0 5.2 1.0 78 chr3R 27029180 intron RYa-R + chr3R 27029219 intron RYa-R + chr3R 27029258 intron RYa-R + chr3R_6_27025001 chr3R_27025001 RAL-356 983 chr3R 27140536 27140548 chr3R 27148125 27148141 412 8 7597 5.5 5.0 5.2 1.3 7605 chr3R 27140536 intron CG6051 - chr3R 27144338 intron CG6051 - chr3R 27148141 intron CG6051 - chr3R_8_27140001 chr3R_27140001 RAL-356 984 chr3R 27292277 27292308 chr3R 27292389 27292409 6 103 1.0 1.5 1.2 2.7 132 chr3R 27292277 intergenic CG3348 - chr3R 27292343 intergenic CG3348 - chr3R 27292409 intergenic CG3348 - chr3R_6_27290001 chr3R_27290001 RAL-356 985 chr3R 27445265 27445278 chr3R 27445324 27445339 9 62 2.5 6.0 4.2 1.7 74 chr3R 27445265 intergenic not near genes chr3R 27445302 intergenic not near genes chr3R 27445339 intergenic not near genes chr3R_9_27445001 chr3R_27445001 RAL-356 986 chr3R 27492380 27492410 chr3R 27492466 27492478 5 77 1.5 0.0 0.8 2.8 98 chr3R 27492380 intergenic not near genes chr3R 27492429 intergenic not near genes chr3R 27492478 intergenic not near genes chr3R_5_27490001 chr3R_27490001 RAL-356 987 chr3R 27511257 27511274 chr3R 27511336 27511361 7 82 4.5 6.5 5.5 1.1 104 chr3R 27511257 intergenic not near genes chr3R 27511309 intergenic not near genes chr3R 27511361 intergenic not near genes chr3R_7_27510001 chr3R_27510001 RAL-356 988 chr3R 27648603 27648869 chr3R 27648672 27648945 15 70 3.0 0.0 1.5 6.0 342 chr3R 27648603 intron tau - chr3R 27648774 intron tau - chr3R 27648945 intron tau - chr3R_15_27645001 chr3R_27645001 RAL-356 989 chr3R 27706774 27706805 chr3R 27706851 27706882 4 73 3.5 0.0 1.8 1.4 108 chr3R 27706774 intergenic CG12428 -,CG12877 + chr3R 27706828 intergenic CG12428 -,CG12877 + chr3R 27706882 intergenic CG12428 -,CG12877 + chr3R_4_27705001 chr3R_27705001 RAL-356 990 chr3R 27733043 27733057 chr3R 27733148 27733155 8 96 30.0 31.0 30.5 0.3 112 chr3R 27733043 intergenic not near genes chr3R 27733099 intergenic not near genes chr3R 27733155 intergenic not near genes chr3R_8_27730001 chr3R_27730001 RAL-356 991 chr3R 27779286 27779288 chr3R 27779348 27779349 4 69 6.0 9.5 7.8 0.5 63 chr3R 27779286 exon CG34353 - chr3R 27779318 intron CG34353 - chr3R 27779349 intron CG34353 - chr3R_4_27775001 chr3R_27775001 RAL-356 992 chr3R 27789085 27789106 chr3R 27789155 27789166 6 71 4.5 2.0 3.2 1.4 81 chr3R 27789085 exon CG34353 - chr3R 27789126 intron CG34353 - chr3R 27789166 intron CG34353 - chr3R_6_27785001 chr3R_27785001 RAL-356 993 chr3R 27856763 27856780 chr3R 27858246 27858251 hopper2 5 1479 5.0 2.5 3.8 1.0 1488 chr3R 27856763 intron CG34353 - chr3R 27857507 intron CG34353 - chr3R 27858251 intron CG34353 - chr3R_5_27855001 chr3R_27855001 RAL-356 994 chr3R 27856782 27856793 chr3R 27858242 27858276 hopper2 8 1467 3.0 2.5 2.8 2.1 1494 chr3R 27856782 intron CG34353 - chr3R 27857529 intron CG34353 - chr3R 27858276 intron CG34353 - chr3R_8_27855001 chr3R_27855001 RAL-356 995 chr3R 27862953 27862987 chr3R 27868258 27868284 Transpac 4 5298 3.0 0.5 1.8 1.4 5331 chr3R 27862953 intron CG34353 - chr3R 27865618 intron CG34353 - chr3R 27868284 intron CG34353 - chr3R_4_27865001 chr3R_27865001 RAL-356 996 chr3R 27875717 27875733 chr3R 27882753 27882784 297 4 7045 2.5 2.0 2.2 1.2 7067 chr3R 27875717 intron CG34353 - chr3R 27879250 intron CG34353 - chr3R 27882784 intron CG34353 - chr3R_4_27875001 chr3R_27875001 RAL-356 997 chr3R 28131440 28131459 chr3R 28131614 28131641 8 173 1.0 2.5 1.8 2.9 201 chr3R 28131440 intergenic not near genes chr3R 28131540 intergenic not near genes chr3R 28131641 intergenic not near genes chr3R_8_28130001 chr3R_28130001 RAL-356 998 chr3R 28137702 28137712 chr3R 28137766 28137767 6 67 2.0 0.5 1.2 2.7 65 chr3R 28137702 intergenic not near genes chr3R 28137734 intergenic not near genes chr3R 28137767 intergenic not near genes chr3R_6_28135001 chr3R_28135001 RAL-356 999 chr3R 28253346 28253370 chr3R 28255846 28255880 jockey 7 2502 4.5 2.0 3.2 1.7 2534 chr3R 28253346 intergenic not near genes chr3R 28254613 intergenic not near genes chr3R 28255880 intergenic not near genes chr3R_7_28250001 chr3R_28250001 RAL-356 1000 chr3R 28302103 28302116 chr3R 28302542 28302543 jockey 4 435 3.0 3.0 3.0 1.0 440 chr3R 28302103 intergenic not near genes chr3R 28302323 intergenic not near genes chr3R 28302543 intergenic not near genes chr3R_4_28300001 chr3R_28300001 RAL-356 1001 chr3R 28302119 28302136 chr3R 28302539 28302562 jockey 4 427 0.5 2.5 1.5 1.6 443 chr3R 28302119 intergenic not near genes chr3R 28302340 intergenic not near genes chr3R 28302562 intergenic not near genes chr3R_4_28300001 chr3R_28300001 RAL-356 1002 chr3R 28352519 28352540 chr3R 28352856 28352880 9 336 4.5 4.5 4.5 1.6 361 chr3R 28352519 exon Or98b + chr3R 28352700 exon Or98b + chr3R 28352880 exon Or98b + chr3R_9_28350001 chr3R_28350001 RAL-356 1003 chr3R 28352541 28352545 chr3R 28352854 28352867 5 331 3.5 4.5 4.0 1.0 326 chr3R 28352541 exon Or98b + chr3R 28352704 exon Or98b + chr3R 28352867 exon Or98b + chr3R_5_28350001 chr3R_28350001 RAL-356 1004 chr3R 28390129 28390147 chr3R 28390189 28390225 6 65 5.0 2.5 3.8 1.2 96 chr3R 28390129 intergenic not near genes chr3R 28390177 intergenic not near genes chr3R 28390225 intergenic not near genes chr3R_6_28390001 chr3R_28390001 RAL-356 1005 chr3R 28424181 28424186 chr3R 28424265 28424267 4 86 2.5 2.5 2.5 1.1 86 chr3R 28424181 intron beat-VI + chr3R 28424224 intron beat-VI + chr3R 28424267 intron beat-VI + chr3R_4_28420001 chr3R_28420001 RAL-356 1006 chr3R 28478420 28478428 chr3R 28478496 28478496 4 76 9.0 4.5 6.8 0.5 76 chr3R 28478420 intergenic not near genes chr3R 28478458 intergenic not near genes chr3R 28478496 intergenic not near genes chr3R_4_28475001 chr3R_28475001 RAL-356 1007 chr3R 28478431 28478447 chr3R 28478495 28478499 9 66 5.5 4.5 5.0 1.5 68 chr3R 28478431 intergenic not near genes chr3R 28478465 intergenic not near genes chr3R 28478499 intergenic not near genes chr3R_9_28475001 chr3R_28475001 RAL-356 1008 chr3R 28479149 28479168 chr3R 28479232 28479251 10 80 2.0 4.0 3.0 2.5 102 chr3R 28479149 intergenic not near genes chr3R 28479200 intergenic not near genes chr3R 28479251 intergenic not near genes chr3R_10_28475001 chr3R_28475001 RAL-356 1009 chr3R 28484355 28484375 chr3R 28486272 28486292 20 1919 44.5 70.0 57.2 0.3 1937 chr3R 28484355 intergenic CG1894 + chr3R 28485324 exon CG1894 + chr3R 28486292 intergenic CG1894 + chr3R_20_28485001 chr3R_28485001 RAL-356 1010 chr3R 28763910 28763922 chr3R 28771336 28771345 Stalker4 4 7426 0.0 0.5 0.2 3.3 7435 chr3R 28763910 intergenic not near genes chr3R 28767628 intergenic not near genes chr3R 28771345 intergenic not near genes chr3R_4_28765001 chr3R_28765001 RAL-356 1011 chr3R 28792871 28792904 chr3R 28797966 28797985 jockey 9 5090 2.0 2.0 2.0 3.0 5114 chr3R 28792871 intergenic not near genes chr3R 28795428 intergenic not near genes chr3R 28797985 intergenic not near genes chr3R_9_28795001 chr3R_28795001 RAL-356 1012 chr3R 21907534 21907536 chr3R 28831801 28831802 82 6924266 28.0 18.0 23.0 3.4 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_82_25365001 chr3R_25365001 RAL-356 1013 chr3R 28890223 28890252 chr3R 28890350 28890367 8 129 4.0 2.5 3.2 1.9 144 chr3R 28890223 intron Doa + chr3R 28890295 intron Doa + chr3R 28890367 intron Doa + chr3R_8_28890001 chr3R_28890001 RAL-356 1014 chr3R 29168492 29168506 chr3R 29168580 29168589 6 84 4.0 6.0 5.0 1.0 97 chr3R 29168492 intron CG11898 + chr3R 29168540 intron CG11898 + chr3R 29168589 intron CG11898 + chr3R_6_29165001 chr3R_29165001 RAL-356 1015 chr3R 29168507 29168508 chr3R 29168579 29168596 4 82 4.0 5.5 4.8 0.7 89 chr3R 29168507 intron CG11898 + chr3R 29168552 intron CG11898 + chr3R 29168596 intron CG11898 + chr3R_4_29165001 chr3R_29165001 RAL-356 1016 chr3R 29213073 29213091 chr3R 29213143 29213172 9 74 2.5 4.5 3.5 2.0 99 chr3R 29213073 intergenic not near genes chr3R 29213122 intergenic not near genes chr3R 29213172 intergenic not near genes chr3R_9_29210001 chr3R_29210001 RAL-356 1017 chr3R 29237269 29237337 chr3R 29239273 29239330 6 2007 18.5 0.0 9.2 0.6 2061 chr3R 29237269 exon CG11951 - chr3R 29238300 intron CG11951 - chr3R 29239330 exon CG31427 - chr3R_6_29235001 chr3R_29235001 RAL-356 1018 chr3R 29389499 29389514 chr3R 29389562 29389564 4 64 5.0 1.0 3.0 1.0 65 chr3R 29389499 intron Ptp99A + chr3R 29389532 intron Ptp99A + chr3R 29389564 intron Ptp99A + chr3R_4_29385001 chr3R_29385001 RAL-356 1019 chr3R 29396573 29396605 chr3R 29396653 29396664 9 71 2.0 3.5 2.8 2.4 91 chr3R 29396573 intron Ptp99A + chr3R 29396618 intron Ptp99A + chr3R 29396664 intron Ptp99A + chr3R_9_29395001 chr3R_29395001 RAL-356 1020 chr3R 29406621 29406636 chr3R 29407907 29407911 jockey 5 1283 7.5 5.0 6.2 0.7 1290 chr3R 29406621 intron Ptp99A + chr3R 29407266 intron Ptp99A + chr3R 29407911 intron Ptp99A + chr3R_5_29405001 chr3R_29405001 RAL-356 1021 chr3R 29406642 29406650 chr3R 29407905 29407922 jockey 6 1272 5.0 4.0 4.5 1.1 1280 chr3R 29406642 intron Ptp99A + chr3R 29407282 intron Ptp99A + chr3R 29407922 intron Ptp99A + chr3R_6_29405001 chr3R_29405001 RAL-356 1022 chr3R 29590377 29590403 chr3R 29590470 29590478 14 88 2.0 1.5 1.8 5.0 101 chr3R 29590377 intron CG31041 - chr3R 29590428 intron CG31041 - chr3R 29590478 intron CG31041 - chr3R_14_29590001 chr3R_29590001 RAL-356 1023 chr3R 29720499 29720525 chr3R 29720602 29720628 8 101 5.0 7.0 6.0 1.1 129 chr3R 29720499 intron CG15506 + chr3R 29720564 intron CG15506 + chr3R 29720628 intron CG15506 + chr3R_8_29720001 chr3R_29720001 RAL-356 1024 chr3R 29758936 29758971 chr3R 29759014 29759032 16 70 5.5 2.5 4.0 3.2 96 chr3R 29758936 3` UTR CR44953 - chr3R 29758984 3` UTR CR44953 - chr3R 29759032 3` UTR CR44953 - chr3R_16_29755001 chr3R_29755001 RAL-356 1025 chr3R 29773874 29773906 chr3R 29773965 29773971 4 84 3.5 0.5 2.0 1.3 97 chr3R 29773874 intron kay + chr3R 29773922 intron kay + chr3R 29773971 intron kay + chr3R_4_29770001 chr3R_29770001 RAL-356 1026 chr3R 29826714 29826747 chr3R 29826808 29826826 6 79 2.5 4.0 3.2 1.4 112 chr3R 29826714 intergenic not near genes chr3R 29826770 intergenic not near genes chr3R 29826826 intergenic Atg16 - chr3R_6_29825001 chr3R_29825001 RAL-356 1027 chr3R 29882039 29882051 chr3R 29891182 29891196 roo 4 9146 1.5 4.5 3.0 1.0 9157 chr3R 29882039 intron CG31038 + chr3R 29886618 intron CG31038 + chr3R 29891196 intron CG31038 + chr3R_4_29885001 chr3R_29885001 RAL-356 1028 chr3R 29963481 29963504 chr3R 29963583 29963606 7 100 4.0 3.0 3.5 1.6 125 chr3R 29963481 intron TkR99D - chr3R 29963544 intron TkR99D - chr3R 29963606 intron TkR99D - chr3R_7_29960001 chr3R_29960001 RAL-356 1029 chr3R 29975701 29975728 chr3R 29975780 29975796 8 75 4.5 4.5 4.5 1.5 95 chr3R 29975701 intergenic not near genes chr3R 29975748 intergenic not near genes chr3R 29975796 intergenic not near genes chr3R_8_29975001 chr3R_29975001 RAL-356 1030 chr3R 30084860 30084885 chr3R 30086323 30086352 hobo 8 1463 2.0 4.0 3.0 2.0 1492 chr3R 30084860 intron sima + chr3R 30085606 intron sima + chr3R 30086352 intron sima + chr3R_8_30085001 chr3R_30085001 RAL-356 1031 chr3R 30171812 30171827 chr3R 30171930 30171955 4 124 19.5 12.5 16.0 0.2 143 chr3R 30171812 3` UTR Mlc2 - chr3R 30171884 3` UTR Mlc2 - chr3R 30171955 3` UTR Mlc2 - chr3R_4_30170001 chr3R_30170001 RAL-356 1032 chr3R 30396225 30396247 chr3R 30404487 30404509 roo 4 8260 2.0 2.0 2.0 1.3 8284 chr3R 30396225 intergenic not near genes chr3R 30400367 intergenic not near genes chr3R 30404509 5` UTR CR45570 + chr3R_4_30400001 chr3R_30400001 RAL-356 1033 chr3R 30549023 30549035 chr3R 30549114 30549125 4 91 3.5 2.0 2.8 1.1 102 chr3R 30549023 intron tmod + chr3R 30549074 intron tmod + chr3R 30549125 intron tmod + chr3R_4_30545001 chr3R_30545001 RAL-356 1034 chr3R 30627608 30627634 chr3R 30627682 30627692 9 69 4.5 3.5 4.0 1.8 84 chr3R 30627608 exon CG2267 - chr3R 30627650 exon CG2267 - chr3R 30627692 exon CG2267 - chr3R_9_30625001 chr3R_30625001 RAL-356 1035 chr3R 30672251 30672269 chr3R 30672326 30672340 7 77 2.0 4.0 3.0 1.8 89 chr3R 30672251 intergenic not near genes chr3R 30672296 intergenic not near genes chr3R 30672340 intergenic not near genes chr3R_7_30670001 chr3R_30670001 RAL-356 1036 chr3R 30679517 30679550 chr3R 30686986 30687019 blood 10 7468 0.0 4.0 2.0 3.3 7502 chr3R 30679517 intergenic not near genes chr3R 30683268 intergenic not near genes chr3R 30687019 intergenic not near genes chr3R_10_30680001 chr3R_30680001 RAL-356 1037 chr3R 30776409 30776427 chr3R 30776546 30776565 8 140 3.0 4.5 3.8 1.7 156 chr3R 30776409 intron zfh1 + chr3R 30776487 intron zfh1 + chr3R 30776565 intron zfh1 + chr3R_8_30775001 chr3R_30775001 RAL-356 1038 chr3R 30781735 30781765 chr3R 30781990 30782007 14 253 3.0 1.0 2.0 4.7 272 chr3R 30781735 intron,3` UTR zfh1 +,CR45189 - chr3R 30781871 intron,intron zfh1 +,CR45189 - chr3R 30782007 intron,intron zfh1 +,CR45189 - chr3R_14_30780001 chr3R_30780001 RAL-356 1039 chr3R 30925909 30925923 chr3R 30925990 30926004 4 78 5.5 3.5 4.5 0.7 95 chr3R 30925909 intron Ptx1 + chr3R 30925956 intron Ptx1 + chr3R 30926004 intron Ptx1 + chr3R_4_30925001 chr3R_30925001 RAL-356 1040 chr3R 30994143 30994154 chr3R 30994236 30994261 4 98 2.5 0.5 1.5 1.6 118 chr3R 30994143 intron 5-HT7 - chr3R 30994202 intron 5-HT7 - chr3R 30994261 intron 5-HT7 - chr3R_4_30990001 chr3R_30990001 RAL-356 1041 chr3R 31018730 31018763 chr3R 31019117 31019149 17 384 4.0 3.0 3.5 3.8 419 chr3R 31018730 intergenic not near genes chr3R 31018940 intergenic not near genes chr3R 31019149 intergenic not near genes chr3R_17_31015001 chr3R_31015001 RAL-356 1042 chr3R 31029690 31029724 chr3R 31029775 31029809 8 78 0.5 2.0 1.2 3.6 119 chr3R 31029690 intergenic not near genes chr3R 31029750 intergenic not near genes chr3R 31029809 intergenic not near genes chr3R_8_31025001 chr3R_31025001 RAL-356 1043 chr3R 31074230 31074258 chr3R 31081828 31081847 springer 5 7594 3.0 0.5 1.8 1.8 7617 chr3R 31074230 intron Sox100B + chr3R 31078038 intron Sox100B + chr3R 31081847 intron Sox100B + chr3R_5_31075001 chr3R_31075001 RAL-356 1044 chr3R 31137168 31137185 chr3R 31137239 31137265 4 74 2.0 4.5 3.2 1.0 97 chr3R 31137168 intron Gycbeta100B + chr3R 31137216 intron Gycbeta100B + chr3R 31137265 intron Gycbeta100B + chr3R_4_31135001 chr3R_31135001 RAL-356 1045 chr3R 31146757 31146778 chr3R 31146835 31146856 5 74 2.5 6.0 4.2 1.0 99 chr3R 31146757 intron Gycbeta100B + chr3R 31146806 intron Gycbeta100B + chr3R 31146856 intron Gycbeta100B + chr3R_5_31145001 chr3R_31145001 RAL-356 1046 chr3R 31295364 31295377 chr3R 31295445 31295448 5 79 3.0 6.5 4.8 0.9 84 chr3R 31295364 intergenic not near genes chr3R 31295406 intergenic not near genes chr3R 31295448 intergenic not near genes chr3R_5_31295001 chr3R_31295001 RAL-356 1047 chr3R 31346718 31346747 chr3R 31346796 31346812 11 74 2.0 6.0 4.0 2.2 94 chr3R 31346718 intron CG34347 + chr3R 31346765 intron CG34347 + chr3R 31346812 intron CG34347 + chr3R_11_31345001 chr3R_31345001 RAL-356 1048 chr3R 31413097 31413120 chr3R 31418290 31418312 copia 12 5187 4.0 1.5 2.8 3.2 5215 chr3R 31413097 intron Gprk2 + chr3R 31415704 intron Gprk2 + chr3R 31418312 intron Gprk2 + chr3R_12_31415001 chr3R_31415001 RAL-356 1049 chr3R 31435383 31435390 chr3R 31435516 31435526 5 136 2.0 2.0 2.0 1.7 143 chr3R 31435383 intron Gprk2 + chr3R 31435454 intron Gprk2 + chr3R 31435526 intron Gprk2 + chr3R_5_31435001 chr3R_31435001 RAL-356 1050 chr3R 31486169 31486178 chr3R 31486250 31486250 4 79 6.5 8.0 7.2 0.5 81 chr3R 31486169 intergenic not near genes chr3R 31486210 intergenic not near genes chr3R 31486250 intergenic not near genes chr3R_4_31485001 chr3R_31485001 RAL-356 1051 chr3R 31630069 31630079 chr3R 31630171 31630184 4 104 3.5 2.0 2.8 1.1 115 chr3R 31630069 intron kek6 + chr3R 31630126 intron kek6 + chr3R 31630184 intron kek6 + chr3R_4_31630001 chr3R_31630001 RAL-356 1052 chr3R 31679960 31679971 chr3R 31680024 31680051 4 66 3.5 4.5 4.0 0.8 91 chr3R 31679960 intergenic CG11550 - chr3R 31680006 intergenic CG11550 - chr3R 31680051 intergenic CG11550 - chr3R_4_31680001 chr3R_31680001 RAL-356 1053 chr3R 31691551 31691561 chr3R 31696299 31696309 Doc 5 4752 6.5 8.0 7.2 0.6 4758 chr3R 31691551 intergenic not near genes chr3R 31693930 intergenic not near genes chr3R 31696309 intergenic not near genes chr3R_5_31690001 chr3R_31690001 RAL-356 1054 chr3R 31831535 31831570 chr3R 31831614 31831618 17 70 5.0 6.0 5.5 2.6 83 chr3R 31831535 intron RhoGAP100F + chr3R 31831576 intron RhoGAP100F + chr3R 31831618 intron RhoGAP100F + chr3R_17_31830001 chr3R_31830001 RAL-356 1055 chr3R 31878617 31878651 chr3R 31878716 31878729 5 79 5.0 2.5 3.8 1.0 112 chr3R 31878617 intron heph - chr3R 31878673 intron heph - chr3R 31878729 intron heph - chr3R_5_31875001 chr3R_31875001 RAL-356 1056 chr3R 31911678 31911706 chr3R 31911764 31911791 7 84 4.0 2.5 3.2 1.7 113 chr3R 31911678 intron heph - chr3R 31911734 intron heph - chr3R 31911791 intron heph - chr3R_7_31910001 chr3R_31910001 RAL-356 1057 chr3R 31918906 31918923 chr3R 31918981 31919008 4 83 2.0 5.5 3.8 0.8 102 chr3R 31918906 intron heph - chr3R 31918957 intron heph - chr3R 31919008 intron heph - chr3R_4_31915001 chr3R_31915001 RAL-356 1058 chr3R 31935879 31935900 chr3R 31935939 31935953 8 63 3.0 3.0 3.0 2.0 74 chr3R 31935879 intron heph - chr3R 31935916 intron heph - chr3R 31935953 intron heph - chr3R_8_31935001 chr3R_31935001 RAL-356 1059 chr3R 32022340 32022349 chr3R 32022429 32022451 4 92 5.5 4.0 4.8 0.7 111 chr3R 32022340 5` UTR CR45557 + chr3R 32022396 5` UTR CR45557 + chr3R 32022451 5` UTR CR45557 + chr3R_4_32020001 chr3R_32020001 RAL-356 1060 chr4 671605 671633 chr4 680188 680215 Tirant 7 8581 2.5 3.0 2.8 1.8 8610 chr4 671605 intron CG11360 + chr4 675910 intron CG11360 + chr4 680215 intron CG11360 + chr4_7_675001 chr4_675001 RAL-356 1061 chr4 896786 896818 chr4 896863 896885 4 74 0.0 1.0 0.5 2.7 99 chr4 896786 intron unc-13 - chr4 896836 intron unc-13 - chr4 896885 intron unc-13 - chr4_4_895001 chr4_895001 RAL-356 1062 chr4 905565 905597 chr4 905647 905665 8 77 1.5 4.5 3.0 2.0 100 chr4 905565 5` UTR unc-13 - chr4 905615 5` UTR unc-13 - chr4 905665 5` UTR unc-13 - chr4_8_905001 chr4_905001 RAL-356 1063 chrX 441013 441023 chrX 441075 441089 5 70 2.5 4.5 3.5 1.1 76 chrX 441013 intron CG32816 - chrX 441051 intron CG32816 - chrX 441089 intron CG32816 - chrX_5_440001 chrX_440001 RAL-356 1064 chrX 450374 450395 chrX 450443 450473 6 74 0.0 1.5 0.8 3.3 99 chrX 450374 intron CG32816 - chrX 450424 intron CG32816 - chrX 450473 intron CG32816 - chrX_6_450001 chrX_450001 RAL-356 1065 chrX 551438 551455 chrX 558982 559008 412 4 7551 6.0 2.0 4.0 0.8 7570 chrX 551438 intron Appl + chrX 555223 intron Appl + chrX 559008 intron Appl + chrX_4_555001 chrX_555001 RAL-356 1066 chrX 561572 561603 chrX 561668 561675 4 85 5.0 2.5 3.8 0.8 103 chrX 561572 intron Appl + chrX 561624 intron Appl + chrX 561675 intron Appl + chrX_4_560001 chrX_560001 RAL-356 1067 chrX 667662 667676 chrX 667733 667757 4 80 2.0 2.0 2.0 1.3 95 chrX 667662 intergenic not near genes chrX 667710 intergenic not near genes chrX 667757 intergenic not near genes chrX_4_665001 chrX_665001 RAL-356 1068 chrX 670268 670293 chrX 670343 670351 7 74 0.5 3.0 1.8 2.5 83 chrX 670268 intergenic not near genes chrX 670310 intergenic not near genes chrX 670351 intergenic not near genes chrX_7_670001 chrX_670001 RAL-356 1069 chrX 680861 680869 chrX 680922 680949 5 73 4.5 2.5 3.5 1.1 88 chrX 680861 intergenic not near genes chrX 680905 intergenic not near genes chrX 680949 intergenic not near genes chrX_5_680001 chrX_680001 RAL-356 1070 chrX 771808 771831 chrX 771899 771915 5 88 3.5 3.5 3.5 1.1 107 chrX 771808 intron fz3 + chrX 771862 intron fz3 + chrX 771915 intron fz3 + chrX_5_770001 chrX_770001 RAL-356 1071 chrX 827618 827633 chrX 835396 835410 roo 5 7786 2.0 2.5 2.2 1.6 7792 chrX 827618 intron CG43867 - chrX 831514 intron CG43867 - chrX 835410 intron CG43867 - chrX_5_830001 chrX_830001 RAL-356 1072 chrX 906714 906728 chrX 908499 908501 S-element 6 1786 5.0 6.5 5.8 0.9 1787 chrX 906714 intron CG43867 - chrX 907608 intron CG43867 - chrX 908501 intron CG43867 - chrX_6_905001 chrX_905001 RAL-356 1073 chrX 906731 906733 chrX 908493 908516 S-element 4 1777 4.5 6.5 5.5 0.6 1785 chrX 906731 intron CG43867 - chrX 907624 intron CG43867 - chrX 908516 intron CG43867 - chrX_4_905001 chrX_905001 RAL-356 1074 chrX 1053117 1053120 chrX 16983076 16983077 7 15929958 12.5 12.5 12.5 0.5 15929960 chrX 1053117 intron CR44779 + chrX 9018097 intron,intron rdgA +,CR43836 - chrX 16983077 intron CG45002 - chrX_7_9015001 chrX_9015001 RAL-356 1075 chrX 1196454 1196471 chrX 1196536 1196553 5 80 2.0 3.5 2.8 1.3 99 chrX 1196454 3` UTR CG11380 + chrX 1196504 3` UTR CG11380 + chrX 1196553 3` UTR CG11380 + chrX_5_1195001 chrX_1195001 RAL-356 1076 chrX 1253745 1253764 chrX 1253813 1253830 6 75 0.5 2.5 1.5 2.4 85 chrX 1253745 intron Atf3 - chrX 1253788 intron Atf3 - chrX 1253830 intron Atf3 - chrX_6_1250001 chrX_1250001 RAL-356 1077 chrX 1357785 1357806 chrX 1367949 1367966 Doc 4 10162 2.0 2.0 2.0 1.3 10181 chrX 1357785 intergenic png - chrX 1362876 intergenic not near genes chrX 1367966 intergenic not near genes chrX_4_1360001 chrX_1360001 RAL-356 1078 chrX 1386396 1386420 chrX 1386472 1386486 14 76 2.0 4.0 3.0 3.5 90 chrX 1386396 intron CG32813 + chrX 1386441 intron CG32813 + chrX 1386486 intron CG32813 + chrX_14_1385001 chrX_1385001 RAL-356 1079 chrX 1428596 1428623 chrX 1428682 1428685 7 74 3.5 5.0 4.2 1.3 89 chrX 1428596 intron futsch + chrX 1428640 intron futsch + chrX 1428685 intron futsch + chrX_7_1425001 chrX_1425001 RAL-356 1080 chrX 1518059 1518066 chrX 1523440 1523453 jockey 5 5395 2.5 1.0 1.8 1.8 5394 chrX 1518059 intergenic inc + chrX 1520756 intergenic not near genes chrX 1523453 intergenic not near genes chrX_5_1520001 chrX_1520001 RAL-356 1081 chrX 1627977 1628006 chrX 1635443 1635448 gtwin 9 7455 2.0 1.0 1.5 3.6 7471 chrX 1627977 intron,intron Mur2B -,br + chrX 1631712 intron,intron Mur2B -,br + chrX 1635448 intron,intron Mur2B -,br + chrX_9_1630001 chrX_1630001 RAL-356 1082 chrX 1954898 1954917 chrX 1962827 1962838 Stalker2 6 7928 0.5 2.0 1.2 2.7 7940 chrX 1954898 intron Hr4 + chrX 1958868 intron Hr4 + chrX 1962838 intron Hr4 + chrX_6_1955001 chrX_1955001 RAL-356 1083 chrX 2098625 2098636 chrX 2098685 2098696 4 63 3.0 7.0 5.0 0.7 71 chrX 2098625 intron csw + chrX 2098660 intron csw + chrX 2098696 intron csw + chrX_4_2095001 chrX_2095001 RAL-356 1084 chrX 2188655 2188675 chrX 2188737 2188738 4 77 3.5 4.0 3.8 0.8 83 chrX 2188655 3` UTR CG3457 + chrX 2188696 3` UTR CG3457 + chrX 2188738 3` UTR CG3457 + chrX_4_2185001 chrX_2185001 RAL-356 1085 chrX 2399848 2399864 chrX 2408190 2408215 roo 4 8347 5.0 4.0 4.5 0.7 8367 chrX 2399848 intergenic not near genes chrX 2404032 intergenic not near genes chrX 2408215 intergenic not near genes chrX_4_2400001 chrX_2400001 RAL-356 1086 chrX 2888118 2888144 chrX 2888196 2888201 5 72 3.5 3.5 3.5 1.1 83 chrX 2888118 intron kirre + chrX 2888160 intron kirre + chrX 2888201 intron kirre + chrX_5_2885001 chrX_2885001 RAL-356 1087 chrX 3058029 3058043 chrX 3058261 3058284 pogo 4 236 1.0 1.0 1.0 2.0 255 chrX 3058029 intron kirre + chrX 3058156 intron kirre + chrX 3058284 intron kirre + chrX_4_3055001 chrX_3055001 RAL-356 1088 chrX 3109452 3109475 chrX 3109529 3109547 8 72 0.5 3.0 1.8 2.9 95 chrX 3109452 intron kirre + chrX 3109500 intron kirre + chrX 3109547 intron kirre + chrX_8_3105001 chrX_3105001 RAL-356 1089 chrX 3278157 3278169 chrX 3278238 3278249 4 81 9.0 10.0 9.5 0.4 92 chrX 3278157 intron dnc + chrX 3278203 intron dnc + chrX 3278249 intron dnc + chrX_4_3275001 chrX_3275001 RAL-356 1090 chrX 3409002 3409015 chrX 3409066 3409089 4 70 1.0 2.5 1.8 1.4 87 chrX 3409002 intron,intron CR44999 +,CG12535 - chrX 3409046 intron,intron CR44999 +,CG12535 - chrX 3409089 intron,intron CR44999 +,CG12535 - chrX_4_3405001 chrX_3405001 RAL-356 1091 chrX 3415015 3415050 chrX 3421200 3421227 3S18 4 6176 1.0 1.0 1.0 2.0 6212 chrX 3415015 intron,intron CR44999 +,CG12535 - chrX 3418121 intron,intron CR44999 +,CG12535 - chrX 3421227 intron,intron CR44999 +,CG12535 - chrX_4_3415001 chrX_3415001 RAL-356 1092 chrX 3597549 3597583 chrX 3619717 3619751 roo 10 22163 3.5 5.5 4.5 1.8 22202 chrX 3597549 intron AstA-R1 + chrX 3608650 intron AstA-R1 + chrX 3619751 intron AstA-R1 + chrX_10_3605001 chrX_3605001 RAL-356 1093 chrX 3703711 3703743 chrX 3703796 3703814 5 80 1.0 3.5 2.2 1.6 103 chrX 3703711 intergenic CR45102 + chrX 3703762 intergenic CR45102 + chrX 3703814 intergenic not near genes chrX_5_3700001 chrX_3700001 RAL-356 1094 chrX 3726789 3726796 chrX 3730166 3730168 NOF 4 3382 1.5 2.0 1.8 1.4 3379 chrX 3726789 intron tlk + chrX 3728478 intron tlk + chrX 3730168 intron tlk + chrX_4_3725001 chrX_3725001 RAL-356 1095 chrX 3842325 3842338 chrX 3842566 3842578 pogo 5 240 3.0 4.0 3.5 1.1 253 chrX 3842325 intron ec + chrX 3842452 intron ec + chrX 3842578 intron ec + chrX_5_3840001 chrX_3840001 RAL-356 1096 chrX 3881287 3881302 chrX 3881417 3881423 5 132 4.0 3.5 3.8 1.0 136 chrX 3881287 intron VhaAC39-1 + chrX 3881355 intron VhaAC39-1 + chrX 3881423 intron VhaAC39-1 + chrX_5_3880001 chrX_3880001 RAL-356 1097 chrX 4047471 4047477 chrX 4047584 4047590 4 112 11.0 6.0 8.5 0.4 119 chrX 4047471 intergenic CR45482 - chrX 4047530 intergenic CR45482 - chrX 4047590 intergenic CR45482 - chrX_4_4045001 chrX_4045001 RAL-356 1098 chrX 4047478 4047505 chrX 4047580 4047603 12 106 4.0 5.5 4.8 2.1 125 chrX 4047478 intergenic CR45482 - chrX 4047540 intergenic CR45482 - chrX 4047603 3` UTR CR45482 - chrX_12_4045001 chrX_4045001 RAL-356 1099 chrX 4101887 4101893 chrX 4101956 4101958 5 75 1.5 6.0 3.8 1.0 71 chrX 4101887 exon CG15375 + chrX 4101922 exon CG15375 + chrX 4101958 exon CG15375 + chrX_5_4100001 chrX_4100001 RAL-356 1100 chrX 4165490 4165494 chrX 4165568 4165575 5 85 3.0 3.5 3.2 1.2 85 chrX 4165490 intron Fas2 - chrX 4165532 intron Fas2 - chrX 4165575 intron Fas2 - chrX_5_4165001 chrX_4165001 RAL-356 1101 chrX 4299505 4299537 chrX 4299969 4299979 6 456 1.0 0.0 0.5 4.0 474 chrX 4299505 intergenic not near genes chrX 4299742 intergenic CG12692 - chrX 4299979 intergenic CG12692 - chrX_6_4295001 chrX_4295001 RAL-356 1102 chrX 4613544 4613573 chrX 4613633 4613644 13 84 3.5 7.5 5.5 2.0 100 chrX 4613544 intergenic not near genes chrX 4613594 intergenic not near genes chrX 4613644 intergenic not near genes chrX_13_4610001 chrX_4610001 RAL-356 1103 chrX 4731825 4731845 chrX 4736903 4736924 jockey 9 5081 4.5 3.5 4.0 1.8 5099 chrX 4731825 intergenic not near genes chrX 4734374 intergenic not near genes chrX 4736924 intergenic not near genes chrX_9_4730001 chrX_4730001 RAL-356 1104 chrX 4763255 4763283 chrX 4763738 4763755 Stalker4 8 483 2.5 0.5 1.5 3.2 500 chrX 4763255 intergenic not near genes chrX 4763505 intergenic not near genes chrX 4763755 intergenic not near genes chrX_8_4760001 chrX_4760001 RAL-356 1105 chrX 4792402 4792406 chrX 4792813 4792839 jockey 4 427 1.5 3.5 2.5 1.1 437 chrX 4792402 intergenic not near genes chrX 4792620 intergenic not near genes chrX 4792839 intergenic not near genes chrX_4_4790001 chrX_4790001 RAL-356 1106 chrX 4967907 4967932 chrX 4967995 4968002 5 81 0.0 0.0 0.0 5.0 95 chrX 4967907 intron CR44833 - chrX 4967954 intron CR44833 - chrX 4968002 intron CR44833 - chrX_5_4965001 chrX_4965001 RAL-356 1107 chrX 4990065 4990075 chrX 4997261 4997275 roo 4 7202 1.5 1.0 1.2 1.8 7210 chrX 4990065 intron CR44833 - chrX 4993670 intron CR44833 - chrX 4997275 intron CR44833 - chrX_4_4990001 chrX_4990001 RAL-356 1108 chrX 5096278 5096303 chrX 5103843 5103868 springer 5 7564 2.5 3.0 2.8 1.3 7590 chrX 5096278 intron,intron CG15465 +,rg + chrX 5100073 intron,intron CG15465 +,rg + chrX 5103868 intron,intron CG15465 +,rg + chrX_5_5100001 chrX_5100001 RAL-356 1109 chrX 5338721 5338739 chrX 5339968 5339975 jockey 4 1245 1.5 2.0 1.8 1.4 1254 chrX 5338721 intergenic not near genes chrX 5339348 intergenic not near genes chrX 5339975 intergenic SK + chrX_4_5335001 chrX_5335001 RAL-356 1110 chrX 5481070 5481076 chrX 5485014 5485025 I-element 4 3948 1.0 0.0 0.5 2.7 3955 chrX 5481070 intron SPR + chrX 5483048 intron SPR + chrX 5485025 intron SPR + chrX_4_5480001 chrX_5480001 RAL-356 1111 chrX 5786581 5786603 chrX 5786662 5786670 4 78 4.0 2.5 3.2 1.0 89 chrX 5786581 intron CG42699 + chrX 5786626 intron CG42699 + chrX 5786670 intron CG42699 + chrX_4_5785001 chrX_5785001 RAL-356 1112 chrX 6003301 6003312 chrX 6003382 6003393 4 81 0.5 8.0 4.2 0.8 92 chrX 6003301 intron CR44498 + chrX 6003347 intron CR44498 + chrX 6003393 intron CR44498 + chrX_4_6000001 chrX_6000001 RAL-356 1113 chrX 6118709 6118733 chrX 6118778 6118803 6 72 1.5 0.0 0.8 3.3 94 chrX 6118709 intron Ca-alpha1T - chrX 6118756 intron Ca-alpha1T - chrX 6118803 intron Ca-alpha1T - chrX_6_6115001 chrX_6115001 RAL-356 1114 chrX 6219435 6219469 chrX 6219517 6219526 7 73 3.0 0.0 1.5 2.8 91 chrX 6219435 intergenic Btd - chrX 6219480 intergenic Btd -,Efr + chrX 6219526 intergenic Btd -,Efr + chrX_7_6215001 chrX_6215001 RAL-356 1115 chrX 6307879 6307909 chrX 6307972 6307986 9 88 4.5 6.0 5.2 1.5 107 chrX 6307879 intergenic not near genes chrX 6307932 intergenic not near genes chrX 6307986 intergenic not near genes chrX_9_6305001 chrX_6305001 RAL-356 1116 chrX 6335215 6335241 chrX 6337725 6337738 Tirant 6 2504 0.5 2.0 1.2 2.7 2523 chrX 6335215 intergenic not near genes chrX 6336476 intergenic not near genes chrX 6337738 intergenic CG3842 + chrX_6_6335001 chrX_6335001 RAL-356 1117 chrX 6392875 6392889 chrX 6397632 6397640 Doc 6 4759 4.0 0.5 2.2 1.9 4765 chrX 6392875 intergenic not near genes chrX 6395258 intergenic not near genes chrX 6397640 intergenic not near genes chrX_6_6395001 chrX_6395001 RAL-356 1118 chrX 6392890 6392901 chrX 6397628 6397649 Doc 8 4752 2.0 0.5 1.2 3.6 4759 chrX 6392890 intergenic not near genes chrX 6395270 intergenic not near genes chrX 6397649 intergenic not near genes chrX_8_6395001 chrX_6395001 RAL-356 1119 chrX 6562824 6562845 chrX 6571303 6571320 Tirant 6 8471 5.0 6.0 5.5 0.9 8496 chrX 6562824 intron CG34417 + chrX 6567072 intron CG34417 + chrX 6571320 intron CG34417 + chrX_6_6565001 chrX_6565001 RAL-356 1120 chrX 6705996 6706009 chrX 6706180 6706198 5 185 4.0 3.0 3.5 1.1 202 chrX 6705996 intron CG14441 + chrX 6706097 intron CG14441 + chrX 6706198 intron CG14441 + chrX_5_6705001 chrX_6705001 RAL-356 1121 chrX 6897692 6897706 chrX 6897801 6897806 4 106 2.0 2.5 2.2 1.2 114 chrX 6897692 intergenic not near genes chrX 6897749 intergenic not near genes chrX 6897806 intergenic not near genes chrX_4_6895001 chrX_6895001 RAL-356 1122 chrX 6987163 6987187 chrX 6987250 6987270 5 83 1.0 1.0 1.0 2.5 107 chrX 6987163 intron,3` UTR ogre -,bou + chrX 6987216 intron ogre - chrX 6987270 intron ogre - chrX_5_6985001 chrX_6985001 RAL-356 1123 chrX 7023621 7023634 chrX 7030992 7031024 Tabor 5 7382 2.0 3.0 2.5 1.4 7403 chrX 7023621 intron CG12541 - chrX 7027322 intron CG12541 - chrX 7031024 intron CG12541 - chrX_5_7025001 chrX_7025001 RAL-356 1124 chrX 7294525 7294542 chrX 7294615 7294632 7 94 1.0 2.5 1.8 2.5 107 chrX 7294525 intron,intron CR44357 -,CG1677 - chrX 7294578 intron,intron CR44357 -,CG1677 - chrX 7294632 intron,intron CR44357 -,CG1677 - chrX_7_7290001 chrX_7290001 RAL-356 1125 chrX 7366333 7366366 chrX 7366437 7366470 4 101 1.0 1.5 1.2 1.8 137 chrX 7366333 intron,intron CR44357 -,CG1677 - chrX 7366402 intron,intron CR44357 -,CG1677 - chrX 7366470 intron,intron CR44357 -,CG1677 - chrX_4_7365001 chrX_7365001 RAL-356 1126 chrX 7832442 7832462 chrX 7832526 7832528 4 81 2.5 1.5 2.0 1.3 86 chrX 7832442 intron CG1402 + chrX 7832485 intron CG1402 + chrX 7832528 intron CG1402 + chrX_4_7830001 chrX_7830001 RAL-356 1127 chrX 8031432 8031460 chrX 8035735 8035749 Juan 17 4300 9.0 4.5 6.8 2.2 4317 chrX 8031432 intergenic not near genes chrX 8033590 intergenic not near genes chrX 8035749 3` UTR CG2233 - chrX_17_8030001 chrX_8030001 RAL-356 1128 chrX 8030969 8031004 chrX 8037403 8037436 Juan 36 6438 52.5 56.0 54.2 0.7 6467 chrX 8030969 intergenic not near genes chrX 8034202 intergenic not near genes chrX 8037436 exon CG2233 - chrX_36_8030001 chrX_8030001 RAL-356 1129 chrX 8092299 8092317 chrX 8092382 8092402 4 78 0.5 3.0 1.8 1.4 103 chrX 8092299 intron Ubc-E2H - chrX 8092350 intron Ubc-E2H - chrX 8092402 intron Ubc-E2H - chrX_4_8090001 chrX_8090001 RAL-356 1130 chrX 8585394 8585427 chrX 8585521 8585540 7 120 1.0 4.5 2.8 1.8 146 chrX 8585394 intron CG12065 + chrX 8585467 intron CG12065 + chrX 8585540 intron CG12065 + chrX_7_8585001 chrX_8585001 RAL-356 1131 chrX 8922346 8922352 chrX 8922758 8922777 jockey 4 421 4.5 2.0 3.2 1.0 431 chrX 8922346 intron rdgA + chrX 8922562 intron rdgA + chrX 8922777 intron rdgA + chrX_4_8920001 chrX_8920001 RAL-356 1132 chrX 8948765 8948781 chrX 8956274 8956291 roo 4 7510 1.5 1.0 1.2 1.8 7526 chrX 8948765 intron rdgA + chrX 8952528 intron rdgA + chrX 8956291 intron rdgA + chrX_4_8950001 chrX_8950001 RAL-356 1133 chrX 9337950 9337967 chrX 9338033 9338056 4 85 1.5 4.0 2.8 1.1 106 chrX 9337950 intron CG34449 - chrX 9338003 intron CG34449 - chrX 9338056 exon CG34449 - chrX_4_9335001 chrX_9335001 RAL-356 1134 chrX 9353151 9353366 chrX 9353246 9353444 5 89 0.0 3.0 1.5 2.0 293 chrX 9353151 intron CG34449 - chrX 9353298 intron CG34449 - chrX 9353444 intron CG34449 - chrX_5_9350001 chrX_9350001 RAL-356 1135 chrX 9508140 9508159 chrX 9509654 9509667 jockey 4 1514 3.0 3.5 3.2 1.0 1527 chrX 9508140 intron CG32700 - chrX 9508904 intron CG32700 - chrX 9509667 intron CG32700 - chrX_4_9505001 chrX_9505001 RAL-356 1136 chrX 9575793 9575803 chrX 9576117 9576118 mdg3 4 322 8.5 3.0 5.8 0.6 325 chrX 9575793 intron,exon CG32699 -,CG42395 - chrX 9575956 intron,intron CG32699 -,CG42395 - chrX 9576118 intron,intron CG32699 -,CG42395 - chrX_4_9575001 chrX_9575001 RAL-356 1137 chrX 9575805 9575820 chrX 9576114 9576128 mdg3 8 316 6.5 3.0 4.8 1.4 323 chrX 9575805 intron,exon CG32699 -,CG42395 - chrX 9575966 intron,intron CG32699 -,CG42395 - chrX 9576128 intron,exon CG32699 -,CG42395 - chrX_8_9575001 chrX_9575001 RAL-356 1138 chrX 9599185 9599196 chrX 9599253 9599272 6 74 5.5 4.0 4.8 1.0 87 chrX 9599185 intergenic not near genes chrX 9599228 intergenic not near genes chrX 9599272 intergenic not near genes chrX_6_9595001 chrX_9595001 RAL-356 1139 chrX 9791872 9791894 chrX 9791969 9791991 6 94 1.5 1.0 1.2 2.7 119 chrX 9791872 intron CG32698 + chrX 9791932 intron CG32698 + chrX 9791991 intron CG32698 + chrX_6_9790001 chrX_9790001 RAL-356 1140 chrX 8382094 8382094 chrX 9845361 9845361 4 1463267 18.0 13.5 15.8 0.2 1463267 chrX 8382094 intergenic not near genes chrX 9113728 exon AP-1gamma + chrX 9845361 intron CG32698 + chrX_4_9110001 chrX_9110001 RAL-356 1141 chrX 10167875 10167889 chrX 10168611 10168635 4 739 3.5 2.0 2.8 1.1 760 chrX 10167875 intron,intron CR44894 -,CG43902 + chrX 10168255 intron,intron CR44894 -,CG43902 + chrX 10168635 intron,intron CR44894 -,CG43902 + chrX_4_10165001 chrX_10165001 RAL-356 1142 chrX 10187441 10187456 chrX 10187513 10187523 5 74 1.0 3.0 2.0 1.7 82 chrX 10187441 intron,intron CR44894 -,CG43902 + chrX 10187482 intron,intron CR44894 -,CG43902 + chrX 10187523 intron,intron CR44894 -,CG43902 + chrX_5_10185001 chrX_10185001 RAL-356 1143 chrX 10550342 10550365 chrX 10550410 10550438 6 75 1.0 0.0 0.5 4.0 96 chrX 10550342 intron spri - chrX 10550390 intron spri - chrX 10550438 intron spri - chrX_6_10550001 chrX_10550001 RAL-356 1144 chrX 10550854 10550887 chrX 10552317 10552339 hobo 14 1457 2.5 2.5 2.5 4.0 1485 chrX 10550854 intron spri - chrX 10551596 intron spri - chrX 10552339 intron spri - chrX_14_10550001 chrX_10550001 RAL-356 1145 chrX 10666455 10666480 chrX 10666622 10666642 4 163 1.5 1.5 1.5 1.6 187 chrX 10666455 intron X11Lbeta + chrX 10666548 intron X11Lbeta + chrX 10666642 intron X11Lbeta + chrX_4_10665001 chrX_10665001 RAL-356 1146 chrX 10686061 10686080 chrX 10691186 10691210 roo 7 5131 1.5 1.0 1.2 3.2 5149 chrX 10686061 intron X11Lbeta + chrX 10688636 intron X11Lbeta + chrX 10691210 intron X11Lbeta + chrX_7_10685001 chrX_10685001 RAL-356 1147 chrX 10811883 10811899 chrX 10811956 10811990 7 85 2.5 4.0 3.2 1.7 107 chrX 10811883 intron Imp - chrX 10811936 intron Imp - chrX 10811990 intron Imp - chrX_7_10810001 chrX_10810001 RAL-356 1148 chrX 11268570 11268582 chrX 11270057 11270063 hopper2 4 1485 6.0 4.5 5.2 0.6 1493 chrX 11268570 intron CG44422 - chrX 11269316 intron CG44422 - chrX 11270063 intron CG44422 - chrX_4_11265001 chrX_11265001 RAL-356 1149 chrX 11312063 11312094 chrX 11319416 11319435 Stalker2 5 7347 0.0 5.5 2.8 1.3 7372 chrX 11312063 intergenic not near genes chrX 11315749 intergenic not near genes chrX 11319435 intergenic not near genes chrX_5_11315001 chrX_11315001 RAL-356 1150 chrX 12094038 12094064 chrX 12094130 12094137 6 83 3.0 4.0 3.5 1.3 99 chrX 12094038 intron,intron CR43960 +,Ten-a + chrX 12094088 intron,intron CR43960 +,Ten-a + chrX 12094137 intron,intron CR43960 +,Ten-a + chrX_6_12090001 chrX_12090001 RAL-356 1151 chrX 12152823 12152837 chrX 12153703 12153704 5 877 3.0 4.0 3.5 1.1 881 chrX 12152823 intron Ten-a + chrX 12153264 intron Ten-a + chrX 12153704 intron Ten-a + chrX_5_12150001 chrX_12150001 RAL-356 1152 chrX 12176752 12176769 chrX 12176813 12176845 4 72 5.5 5.5 5.5 0.6 93 chrX 12176752 intron,3` UTR Ten-a +,CG1924 - chrX 12176798 intron,3` UTR Ten-a +,CG1924 - chrX 12176845 intron,3` UTR Ten-a +,CG1924 - chrX_4_12175001 chrX_12175001 RAL-356 1153 chrX 12377829 12377848 chrX 12377993 12378025 5 168 1.5 0.5 1.0 2.5 196 chrX 12377829 intergenic Ir11a - chrX 12377927 intergenic Ir11a - chrX 12378025 intergenic Ir11a - chrX_5_12375001 chrX_12375001 RAL-356 1154 chrX 12417724 12417736 chrX 12417790 12417819 6 72 2.5 2.5 2.5 1.7 95 chrX 12417724 intergenic not near genes chrX 12417772 intergenic not near genes chrX 12417819 intergenic not near genes chrX_6_12415001 chrX_12415001 RAL-356 1155 chrX 12533813 12533820 chrX 12533875 12533880 4 65 0.0 1.5 0.8 2.2 67 chrX 12533813 intron CG43921 - chrX 12533846 intron CG43921 - chrX 12533880 intron CG43921 - chrX_4_12530001 chrX_12530001 RAL-356 1156 chrX 9845361 9845361 chrX 12546495 12546497 gypsy5 5 2701135 12.0 14.0 13.0 0.4 2701136 chrX 9845361 intron CG32698 + chrX 11195929 intergenic not near genes chrX 12546497 intron CG43921 - chrX_5_11195001 chrX_11195001 RAL-356 1157 chrX 13374849 13374864 chrX 13374921 13374944 4 74 3.5 1.0 2.2 1.2 95 chrX 13374849 intron CG1640 + chrX 13374896 intron CG1640 + chrX 13374944 intron CG1640 + chrX_4_13370001 chrX_13370001 RAL-356 1158 chrX 13975877 13975904 chrX 13975950 13975981 4 70 0.0 2.0 1.0 2.0 104 chrX 13975877 intron mamo - chrX 13975929 intron mamo - chrX 13975981 intron mamo - chrX_4_13975001 chrX_13975001 RAL-356 1159 chrX 14105048 14105053 chrX 14114176 14114181 roo 4 9130 4.0 6.0 5.0 0.7 9133 chrX 14105048 intergenic not near genes chrX 14109614 intergenic not near genes chrX 14114181 5` UTR CR44657 + chrX_4_14105001 chrX_14105001 RAL-356 1160 chrX 14131489 14131510 chrX 14131570 14131570 4 75 2.0 3.5 2.8 1.1 81 chrX 14131489 intergenic not near genes chrX 14131530 intergenic not near genes chrX 14131570 intergenic not near genes chrX_4_14130001 chrX_14130001 RAL-356 1161 chrX 14333295 14333314 chrX 14333370 14333374 5 66 0.5 2.5 1.5 2.0 79 chrX 14333295 intron dpr8 + chrX 14333334 intron dpr8 + chrX 14333374 intron dpr8 + chrX_5_14330001 chrX_14330001 RAL-356 1162 chrX 14411271 14411290 chrX 14411349 14411368 4 75 0.0 3.5 1.8 1.4 97 chrX 14411271 intron dpr8 + chrX 14411320 intron dpr8 + chrX 14411368 intron dpr8 + chrX_4_14410001 chrX_14410001 RAL-356 1163 chrX 14531358 14531386 chrX 14531447 14531458 5 82 1.0 2.0 1.5 2.0 100 chrX 14531358 intergenic not near genes chrX 14531408 intergenic not near genes chrX 14531458 intergenic not near genes chrX_5_14530001 chrX_14530001 RAL-356 1164 chrX 14636470 14636498 chrX 14641896 14641909 I-element 5 5427 2.5 2.5 2.5 1.4 5439 chrX 14636470 intron NetA - chrX 14639190 intron NetA - chrX 14641909 intron NetA - chrX_5_14635001 chrX_14635001 RAL-356 1165 chrX 14861923 14861956 chrX 14862137 14862170 7 221 5.0 8.5 6.8 0.9 247 chrX 14861923 intron Flo2 + chrX 14862046 intron Flo2 + chrX 14862170 intron Flo2 + chrX_7_14860001 chrX_14860001 RAL-356 1166 chrX 14952447 14952465 chrX 14952604 14952617 6 157 2.0 2.0 2.0 2.0 170 chrX 14952447 intron,3` UTR pdgy -,CR44831 - chrX 14952532 intron,3` UTR pdgy -,CR44831 - chrX 14952617 intron,3` UTR pdgy -,CR44831 - chrX_6_14950001 chrX_14950001 RAL-356 1167 chrX 15277635 15277663 chrX 15277720 15277734 6 73 1.5 3.0 2.2 1.9 99 chrX 15277635 intergenic not near genes chrX 15277684 intergenic not near genes chrX 15277734 intergenic not near genes chrX_6_15275001 chrX_15275001 RAL-356 1168 chrX 15369849 15369858 chrX 15369915 15369941 4 74 2.0 1.5 1.8 1.4 92 chrX 15369849 intron acj6 - chrX 15369895 intron acj6 - chrX 15369941 intron acj6 - chrX_4_15365001 chrX_15365001 RAL-356 1169 chrX 15413050 15413064 chrX 15417352 15417363 Juan 5 4301 6.5 2.5 4.5 0.9 4313 chrX 15413050 intron Cngl - chrX 15415206 intron Cngl - chrX 15417363 intron Cngl - chrX_5_15415001 chrX_15415001 RAL-356 1170 chrX 15413066 15413084 chrX 15417351 15417371 Juan 5 4288 3.0 2.5 2.8 1.3 4305 chrX 15413066 intron Cngl - chrX 15415218 intron Cngl - chrX 15417371 intron Cngl - chrX_5_15415001 chrX_15415001 RAL-356 1171 chrX 15435688 15435705 chrX 15436116 15436128 rover 5 428 0.5 3.5 2.0 1.7 440 chrX 15435688 intron Cngl - chrX 15435908 intron Cngl - chrX 15436128 intron Cngl - chrX_5_15435001 chrX_15435001 RAL-356 1172 chrX 15561948 15561979 chrX 15562023 15562059 9 69 0.0 2.0 1.0 4.5 111 chrX 15561948 intergenic not near genes chrX 15562004 intergenic not near genes chrX 15562059 intergenic not near genes chrX_9_15560001 chrX_15560001 RAL-356 1173 chrX 15678058 15678066 chrX 15678115 15678143 5 63 2.0 4.5 3.2 1.2 85 chrX 15678058 intergenic CG12708 + chrX 15678100 intergenic CG12708 + chrX 15678143 intergenic CG12708 + chrX_5_15675001 chrX_15675001 RAL-356 1174 chrX 15726403 15726438 chrX 15726486 15726506 10 73 3.5 1.0 2.2 3.1 103 chrX 15726403 exon CG8184 + chrX 15726454 intron CG8184 + chrX 15726506 intron CG8184 + chrX_10_15725001 chrX_15725001 RAL-356 1175 chrX 15749665 15749683 chrX 15749768 15749775 4 100 0.0 1.5 0.8 2.2 110 chrX 15749665 intron CG8239 + chrX 15749720 intron CG8239 + chrX 15749775 intron CG8239 + chrX_4_15745001 chrX_15745001 RAL-356 1176 chrX 16154937 16154951 chrX 16155020 16155034 4 83 5.0 0.5 2.8 1.1 97 chrX 16154937 intergenic not near genes chrX 16154986 intergenic not near genes chrX 16155034 intergenic not near genes chrX_4_16150001 chrX_16150001 RAL-356 1177 chrX 16839079 16839100 chrX 16839330 16839345 4 247 0.0 0.5 0.2 3.3 266 chrX 16839079 3` UTR RSG7 - chrX 16839212 3` UTR RSG7 - chrX 16839345 3` UTR RSG7 - chrX_4_16835001 chrX_16835001 RAL-356 1178 chrX 16983076 16983077 chrX 19404963 19404963 4 2421887 10.0 10.5 10.2 0.4 2421887 chrX 16983076 intron CG45002 - chrX 18194020 intron Frq2 + chrX 19404963 intron kek5 + chrX_4_18190001 chrX_18190001 RAL-356 1179 chrX 17282885 17282910 chrX 17282953 17282968 11 71 2.0 0.0 1.0 5.5 83 chrX 17282885 intron CG5445 + chrX 17282926 5` UTR CG5445 + chrX 17282968 5` UTR CG5445 + chrX_11_17280001 chrX_17280001 RAL-356 1180 chrX 17352611 17352621 chrX 17352695 17352706 5 88 0.0 2.0 1.0 2.5 95 chrX 17352611 intergenic not near genes chrX 17352658 intergenic not near genes chrX 17352706 intergenic not near genes chrX_5_17350001 chrX_17350001 RAL-356 1181 chrX 17680891 17680918 chrX 17680966 17680977 8 70 4.0 4.0 4.0 1.6 86 chrX 17680891 intron chas - chrX 17680934 intron chas - chrX 17680977 intron chas - chrX_8_17680001 chrX_17680001 RAL-356 1182 chrX 18063699 18063714 chrX 18063855 18063859 6 154 1.0 2.0 1.5 2.4 160 chrX 18063699 intergenic Sh - chrX 18063779 intergenic not near genes chrX 18063859 intergenic not near genes chrX_6_18060001 chrX_18060001 RAL-356 1183 chrX 18270056 18270070 chrX 18270133 18270137 4 77 2.0 1.0 1.5 1.6 81 chrX 18270056 intergenic not near genes chrX 18270096 intergenic not near genes chrX 18270137 intergenic not near genes chrX_4_18270001 chrX_18270001 RAL-356 1184 chrX 18486123 18486142 chrX 18486200 18486230 10 80 2.0 0.5 1.2 4.5 107 chrX 18486123 exon psh - chrX 18486176 intron psh - chrX 18486230 intron psh - chrX_10_18485001 chrX_18485001 RAL-356 1185 chrX 18645027 18645042 chrX 18645114 18645137 6 89 3.0 1.0 2.0 2.0 110 chrX 18645027 intron Rip11 - chrX 18645082 intron Rip11 - chrX 18645137 intron Rip11 - chrX_6_18645001 chrX_18645001 RAL-356 1186 chrX 18896520 18896548 chrX 18896631 18896645 6 108 1.0 1.5 1.2 2.7 125 chrX 18896520 3` UTR CG7349 + chrX 18896582 intergenic CG7349 + chrX 18896645 intergenic CG7349 + chrX_6_18895001 chrX_18895001 RAL-356 1187 chrX 19060417 19060438 chrX 19065190 19065202 Doc 6 4772 1.0 1.0 1.0 3.0 4785 chrX 19060417 intron CG14190 + chrX 19062810 intron CG14190 + chrX 19065202 intron CG14190 + chrX_6_19060001 chrX_19060001 RAL-356 1188 chrX 19461147 19461174 chrX 19461240 19461268 5 87 1.5 1.5 1.5 2.0 121 chrX 19461147 intron kek5 + chrX 19461208 intron kek5 + chrX 19461268 intron kek5 + chrX_5_19460001 chrX_19460001 RAL-356 1189 chrX 19472126 19472158 chrX 19472693 19472700 jockey 5 556 2.5 6.0 4.2 1.0 574 chrX 19472126 intergenic kek5 + chrX 19472413 intergenic kek5 + chrX 19472700 intergenic not near genes chrX_5_19470001 chrX_19470001 RAL-356 1190 chrX 19710083 19710096 chrX 19711860 19711877 S-element 5 1779 2.5 1.5 2.0 1.7 1794 chrX 19710083 intron meso18E - chrX 19710980 intron meso18E - chrX 19711877 intron meso18E - chrX_5_19710001 chrX_19710001 RAL-356 1191 chrX 19983429 19983536 chrX 19983514 19983693 4 139 0.5 0.5 0.5 2.7 264 chrX 19983429 intergenic not near genes chrX 19983561 intergenic not near genes chrX 19983693 intergenic not near genes chrX_4_19980001 chrX_19980001 RAL-356 1192 chrX 20069265 20069295 chrX 20069398 20069428 12 130 2.5 2.0 2.2 3.8 163 chrX 20069265 intergenic not near genes chrX 20069346 intergenic not near genes chrX 20069428 intergenic not near genes chrX_12_20065001 chrX_20065001 RAL-356 1193 chrX 20369326 20369342 chrX 20369403 20369410 7 77 1.0 1.5 1.2 3.2 84 chrX 20369326 intergenic not near genes chrX 20369368 intergenic not near genes chrX 20369410 intergenic not near genes chrX_7_20365001 chrX_20365001 RAL-356 1194 chrX 20383812 20383827 chrX 20383892 20383918 5 86 3.5 3.5 3.5 1.1 106 chrX 20383812 intergenic not near genes chrX 20383865 intergenic not near genes chrX 20383918 intergenic not near genes chrX_5_20380001 chrX_20380001 RAL-356 1195 chrX 20570776 20570801 chrX 20570859 20570883 7 78 0.5 1.0 0.8 3.9 107 chrX 20570776 intergenic not near genes chrX 20570830 intergenic not near genes chrX 20570883 intergenic not near genes chrX_7_20570001 chrX_20570001 RAL-356 1196 chrX 20641198 20641218 chrX 20641295 20641313 5 94 2.5 2.0 2.2 1.6 115 chrX 20641198 intergenic not near genes chrX 20641256 intergenic not near genes chrX 20641313 intergenic not near genes chrX_5_20640001 chrX_20640001 RAL-356 1197 chrX 21086137 21086160 chrX 21087163 21087180 jockey 4 1024 4.0 0.5 2.2 1.2 1043 chrX 21086137 intergenic not near genes chrX 21086658 intergenic not near genes chrX 21087180 intergenic not near genes chrX_4_21085001 chrX_21085001 RAL-356 1198 chrX 21089150 21089177 chrX 21089244 21089271 6 89 1.5 3.0 2.2 1.9 121 chrX 21089150 intergenic not near genes chrX 21089210 intergenic not near genes chrX 21089271 intergenic not near genes chrX_6_21085001 chrX_21085001 RAL-356 1199 chrX 21092652 21092688 chrX 21092728 21092766 16 69 5.5 2.0 3.8 3.3 114 chrX 21092652 intergenic not near genes chrX 21092709 intergenic not near genes chrX 21092766 intergenic not near genes chrX_16_21090001 chrX_21090001 RAL-356 1200 chrX 21451609 21451635 chrX 21451685 21451691 8 66 0.5 2.5 1.5 3.2 82 chrX 21451609 intron CG42343 - chrX 21451650 intron CG42343 - chrX 21451691 intron CG42343 - chrX_8_21450001 chrX_21450001 RAL-356 1201 chrX 21500568 21500589 chrX 21500769 21500790 4 196 0.0 4.0 2.0 1.3 222 chrX 21500568 intron CR45082 - chrX 21500679 intron CR45082 - chrX 21500790 intron CR45082 - chrX_4_21500001 chrX_21500001 RAL-356 1202 chrX 22763620 22763648 chrX 22763706 22763734 7 85 1.5 4.0 2.8 1.8 114 chrX 22763620 intron CR44997 + chrX 22763677 intron CR44997 + chrX 22763734 intron CR44997 + chrX_7_22760001 chrX_22760001 RAL-356 1203 chrX 22786022 22786031 chrX 22786100 22786125 5 89 1.5 1.0 1.2 2.3 103 chrX 22786022 intron CR44997 + chrX 22786074 intron CR44997 + chrX 22786125 intron CR44997 + chrX_5_22785001 chrX_22785001 RAL-356 1204 chrX 22992397 22992430 chrX 22992523 22992561 9 128 1.0 2.5 1.8 3.2 164 chrX 22992397 intron,intron stnA -,stnB - chrX 22992479 intron,intron stnA -,stnB - chrX 22992561 intron,intron stnA -,stnB - chrX_9_22990001 chrX_22990001 RAL-356 1205 chrX 23036382 23036414 chrX 23037783 23037794 pogo 5 1396 1.0 0.5 0.8 2.8 1412 chrX 23036382 intron CG12061 + chrX 23037088 intron CG12061 + chrX 23037794 intron CG12061 + chrX_5_23035001 chrX_23035001 RAL-356