SV#	Chr_5p	Chr_coord_5p_start	Chr_coord_5p_end	Chr_3p	Chr_coord_3p_start	Chr_coord_3p_end	repName	Reads_collapsed	avg_del_len	RefGen_3prime	Refgen_5prime	RefGen_Avg	Coverage_Ratio	size	Chr_5p	Chr_coord_5p	classification_5p	comment_5p	Chr_mid	Chr_coord_mid	classification_mid	comment_mid	Chr_3p	Chr_coord_3p	classification_3p	comment_3p	depletion_code	loci_code	libname
1	chr2L	47468	47491	chr2L	52572	52582	jockey	7	5099	2.5	6.0	4.2	1.3	5114	chr2L	47468	intron	Cda5 -	chr2L	50025	intron	Cda5 -	chr2L	52582	intron	Cda5 -	chr2L_7_50001	chr2L_50001	RAL-352
7	chr2L	686919	686949	chr2L	695956	695974	roo	8	9037	3.0	3.0	3.0	2.0	9055	chr2L	686919	intron	ds -	chr2L	691446	intron	ds -	chr2L	695974	intron	ds -	chr2L_8_690001	chr2L_690001	RAL-352
9	chr2L	770466	770487	chr2L	772244	772268	Bari1	9	1777	4.0	3.5	3.8	1.9	1802	chr2L	770466	intergenic	not near genes	chr2L	771367	intergenic	not near genes	chr2L	772268	intergenic	CR44614 +	chr2L_9_770001	chr2L_770001	RAL-352
23	chr2L	1570694	1570719	chr2L	1573561	1573591	F-element	6	2870	5.0	1.0	3.0	1.5	2897	chr2L	1570694	intron	haf +	chr2L	1572142	intron	haf +	chr2L	1573591	intron	haf +	chr2L_6_1570001	chr2L_1570001	RAL-352
26	chr2L	1711363	1711383	chr2L	1711681	1711692	mdg3	9	316	6.0	2.5	4.2	1.7	329	chr2L	1711363	3` UTR,3` UTR	mRpL48 +,frtz -	chr2L	1711528	3` UTR	frtz -	chr2L	1711692	3` UTR	frtz -	chr2L_9_1710001	chr2L_1710001	RAL-352
29	chr2L	2100375	2100407	chr2L	2109526	2109558	roo	13	9148	2.5	5.0	3.8	2.7	9183	chr2L	2100375	intron	dpr3 -	chr2L	2104966	intron	dpr3 -	chr2L	2109558	intron	dpr3 -	chr2L_13_2100001	chr2L_2100001	RAL-352
31	chr2L	2294062	2294075	chr2L	2299252	2299263	copia	5	5192	1.5	5.0	3.2	1.2	5201	chr2L	2294062	intergenic	not near genes	chr2L	2296662	intergenic	not near genes	chr2L	2299263	intergenic	not near genes	chr2L_5_2295001	chr2L_2295001	RAL-352
36	chr2L	2661194	2661219	chr2L	2663032	2663035	I-element	4	1832	1.0	1.5	1.2	1.8	1841	chr2L	2661194	intergenic	not near genes	chr2L	2662114	intergenic	not near genes	chr2L	2663035	intergenic	not near genes	chr2L_4_2660001	chr2L_2660001	RAL-352
39	chr2L	2772611	2772623	chr2L	2779195	2779204	297	6	6583	2.0	1.0	1.5	2.4	6593	chr2L	2772611	3` UTR	Syt1 -	chr2L	2775908	intron	Syt1 -	chr2L	2779204	3` UTR	Syt1 -	chr2L_6_2775001	chr2L_2775001	RAL-352
41	chr2L	3073038	3073064	chr2L	3078241	3078267	copia	10	5200	2.0	6.0	4.0	2.0	5229	chr2L	3073038	intron	toc -	chr2L	3075652	intron	toc -	chr2L	3078267	intron	toc -	chr2L_10_3075001	chr2L_3075001	RAL-352
46	chr2L	3251497	3251522	chr2L	3259062	3259087	springer	4	7565	2.0	0.5	1.2	1.8	7590	chr2L	3251497	intergenic	not near genes	chr2L	3255292	intergenic	not near genes	chr2L	3259087	intergenic	not near genes	chr2L_4_3255001	chr2L_3255001	RAL-352
53	chr2L	4066048	4066066	chr2L	4068873	4068888	Juan	4	2824	3.5	2.0	2.8	1.1	2840	chr2L	4066048	intron	ed +	chr2L	4067468	intron	ed +	chr2L	4068888	intron	ed +	chr2L_4_4065001	chr2L_4065001	RAL-352
57	chr2L	4601703	4601737	chr2L	4609143	4609177	mdg1	13	7439	5.5	3.0	4.2	2.5	7474	chr2L	4601703	intron	dp -	chr2L	4605440	intron	dp -	chr2L	4609177	intron	dp -	chr2L_13_4605001	chr2L_4605001	RAL-352
61	chr2L	4918165	4918175	chr2L	4923238	4923248	jockey	4	5071	0.5	0.0	0.2	3.3	5083	chr2L	4918165	intron	hoe1 -	chr2L	4920706	intron	hoe1 -	chr2L	4923248	intron	hoe1 -	chr2L_4_4920001	chr2L_4920001	RAL-352
70	chr2L	5827710	5827741	chr2L	5836718	5836735	roo	10	9003	5.0	4.5	4.8	1.7	9025	chr2L	5827710	intron	TrissinR +	chr2L	5832222	intron	TrissinR +	chr2L	5836735	intron	TrissinR +	chr2L_10_5830001	chr2L_5830001	RAL-352
76	chr2L	6363155	6363181	chr2L	6366071	6366103	Burdock	9	2916	1.5	4.0	2.8	2.4	2948	chr2L	6363155	intergenic	not near genes	chr2L	6364629	intergenic	not near genes	chr2L	6366103	intergenic	not near genes	chr2L_9_6360001	chr2L_6360001	RAL-352
77	chr2L	6426861	6426889	chr2L	6445113	6445140	roo	10	18257	4.0	4.5	4.2	1.9	18279	chr2L	6426861	3` UTR	CG9527 -	chr2L	6436000	intron	CG9527 -	chr2L	6445140	exon	CG9527 -	chr2L_10_6435001	chr2L_6435001	RAL-352
85	chr2L	6876794	6876809	chr2L	6882969	6882977	diver	4	6181	4.0	3.5	3.8	0.8	6183	chr2L	6876794	intron	Nlg2 +	chr2L	6879886	intron	Nlg2 +	chr2L	6882977	intron	Nlg2 +	chr2L_4_6875001	chr2L_6875001	RAL-352
89	chr2L	7343326	7343358	chr2L	7350442	7350473	roo	12	7114	5.0	4.5	4.8	2.1	7147	chr2L	7343326	intron	Wnt6 +	chr2L	7346900	intron	Wnt6 +	chr2L	7350473	intron	Wnt6 +	chr2L_12_7345001	chr2L_7345001	RAL-352
94	chr2L	7959044	7959058	chr2L	7960454	7960463	pogo	5	1409	3.5	0.0	1.8	1.8	1419	chr2L	7959044	intron	Snoo -	chr2L	7959754	intron	Snoo -	chr2L	7960463	intron	Snoo -	chr2L_5_7955001	chr2L_7955001	RAL-352
102	chr2L	8452423	8452448	chr2L	8461591	8461619	roo	4	9163	1.0	1.0	1.0	2.0	9196	chr2L	8452423	intron	fu12 -	chr2L	8457021	intron	fu12 -	chr2L	8461619	intron	fu12 -	chr2L_4_8455001	chr2L_8455001	RAL-352
103	chr2L	8594463	8594494	chr2L	8601517	8601536	297	4	7050	2.5	1.5	2.0	1.3	7073	chr2L	8594463	intron,3` UTR	Sema-1a +,CR43855 -	chr2L	8598000	intron	Sema-1a +	chr2L	8601536	intron	Sema-1a +	chr2L_4_8595001	chr2L_8595001	RAL-352
106	chr2L	8723122	8723147	chr2L	8731497	8731523	Tirant	5	8376	1.0	3.0	2.0	1.7	8401	chr2L	8723122	intron	raw -	chr2L	8727322	intron	raw -	chr2L	8731523	intron	raw -	chr2L_5_8725001	chr2L_8725001	RAL-352
107	chr2L	9000283	9000311	chr2L	9007793	9007817	roo	6	7509	3.5	1.5	2.5	1.7	7534	chr2L	9000283	intergenic	Try29F +	chr2L	9004050	intergenic	not near genes	chr2L	9007817	intergenic	not near genes	chr2L_6_9000001	chr2L_9000001	RAL-352
110	chr2L	9217983	9218003	chr2L	9222770	9222790	Doc	4	4786	3.5	3.5	3.5	0.9	4807	chr2L	9217983	intron	tai +	chr2L	9220386	intron	tai +	chr2L	9222790	intron	tai +	chr2L_4_9220001	chr2L_9220001	RAL-352
114	chr2L	9393504	9393523	chr2L	9396469	9396490	jockey	6	2965	5.0	5.5	5.2	1.0	2986	chr2L	9393504	intron	Shawl -	chr2L	9394997	intron	Shawl -	chr2L	9396490	intron	Shawl -	chr2L_6_9390001	chr2L_9390001	RAL-352
117	chr2L	9973727	9973754	chr2L	9980846	9980873	HMS-Beagle	8	7112	4.5	7.5	6.0	1.1	7146	chr2L	9973727	intergenic	not near genes	chr2L	9977300	intergenic	not near genes	chr2L	9980873	intergenic	not near genes	chr2L_8_9975001	chr2L_9975001	RAL-352
120	chr2L	10156332	10156353	chr2L	10163800	10163823	blood	9	7465	2.5	6.5	4.5	1.6	7491	chr2L	10156332	intron,3` UTR	CG44153 -,CG4839 +	chr2L	10160078	intron	CG44153 -	chr2L	10163823	intron	CG44153 -	chr2L_9_10160001	chr2L_10160001	RAL-352
123	chr2L	10592846	10592870	chr2L	10600508	10600532	opus	4	7658	0.0	2.0	1.0	2.0	7686	chr2L	10592846	intron	Trim9 +	chr2L	10596689	intron	Trim9 +	chr2L	10600532	intron	Trim9 +	chr2L_4_10595001	chr2L_10595001	RAL-352
128	chr2L	10946951	10946976	chr2L	10956165	10956186	roo	18	9212	4.0	8.0	6.0	2.6	9235	chr2L	10946951	intron	dpr2 -	chr2L	10951568	intron	dpr2 -	chr2L	10956186	intron	dpr2 -	chr2L_18_10950001	chr2L_10950001	RAL-352
134	chr2L	11563634	11563654	chr2L	11568838	11568857	copia	5	5203	5.0	0.0	2.5	1.4	5223	chr2L	11563634	intergenic	not near genes	chr2L	11566246	intergenic	not near genes	chr2L	11568857	intergenic	not near genes	chr2L_5_11565001	chr2L_11565001	RAL-352
137	chr2L	11713506	11713536	chr2L	11720974	11721004	blood	10	7466	1.5	1.0	1.2	4.5	7498	chr2L	11713506	intergenic	not near genes	chr2L	11717255	intergenic	not near genes	chr2L	11721004	intergenic	CR44143 +	chr2L_10_11715001	chr2L_11715001	RAL-352
146	chr2L	12558319	12558353	chr2L	12565448	12565482	HMS-Beagle	6	7126	1.5	2.5	2.0	2.0	7163	chr2L	12558319	intergenic	not near genes	chr2L	12561900	intergenic	not near genes	chr2L	12565482	intergenic	not near genes	chr2L_6_12560001	chr2L_12560001	RAL-352
147	chr2L	12731057	12731086	chr2L	12735824	12735853	F-element	6	4767	2.5	1.0	1.8	2.1	4796	chr2L	12731057	intron	MRP +	chr2L	12733455	intron	MRP +	chr2L	12735853	intron	MRP +	chr2L_6_12730001	chr2L_12730001	RAL-352
148	chr2L	12739173	12739198	chr2L	12743954	12743979	Doc	6	4780	5.0	3.0	4.0	1.2	4806	chr2L	12739173	exon	MRP +	chr2L	12741576	intron	MRP +	chr2L	12743979	exon	MRP +	chr2L_6_12740001	chr2L_12740001	RAL-352
151	chr2L	12781795	12781814	chr2L	12789245	12789251	Quasimodo	4	7441	2.0	2.5	2.2	1.2	7456	chr2L	12781795	intergenic	not near genes	chr2L	12785523	intergenic	not near genes	chr2L	12789251	intergenic	not near genes	chr2L_4_12785001	chr2L_12785001	RAL-352
152	chr2L	12791606	12791632	chr2L	12795280	12795307	F-element	8	3674	2.0	0.0	1.0	4.0	3701	chr2L	12791606	intergenic	not near genes	chr2L	12793456	intergenic	not near genes	chr2L	12795307	intergenic	not near genes	chr2L_8_12790001	chr2L_12790001	RAL-352
153	chr2L	12861702	12861723	chr2L	12863169	12863170	hobo	4	1462	10.0	15.5	12.8	0.3	1468	chr2L	12861702	intergenic	not near genes	chr2L	12862436	intergenic	not near genes	chr2L	12863170	intergenic	not near genes	chr2L_4_12860001	chr2L_12860001	RAL-352
155	chr2L	12933853	12933881	chr2L	12941318	12941334	blood	6	7461	2.5	3.5	3.0	1.5	7481	chr2L	12933853	intergenic	not near genes	chr2L	12937594	intergenic	not near genes	chr2L	12941334	intergenic	not near genes	chr2L_6_12935001	chr2L_12935001	RAL-352
157	chr2L	13241958	13241969	chr2L	13244342	13244353	BS	4	2384	5.0	2.5	3.8	0.8	2395	chr2L	13241958	5` UTR	CR45330 +	chr2L	13243156	intron	CR45330 +	chr2L	13244353	5` UTR	CR45330 +	chr2L_4_13240001	chr2L_13240001	RAL-352
161	chr2L	13405655	13405678	chr2L	13410452	13410474	Doc	8	4794	3.0	2.0	2.5	2.3	4819	chr2L	13405655	exon	CG7110 +	chr2L	13408064	intron	CG7110 +	chr2L	13410474	intron	CG7110 +	chr2L_8_13405001	chr2L_13405001	RAL-352
162	chr2L	13481446	13481479	chr2L	13482052	13482071	jockey	7	602	4.5	4.0	4.2	1.3	625	chr2L	13481446	intron	CG42784 +	chr2L	13481758	intron	CG42784 +	chr2L	13482071	intron	CG42784 +	chr2L_7_13480001	chr2L_13480001	RAL-352
166	chr2L	13761805	13761833	chr2L	13762914	13762944	Doc	8	1108	3.0	2.5	2.8	2.1	1139	chr2L	13761805	intron	TM9SF4 +	chr2L	13762374	intron	TM9SF4 +	chr2L	13762944	intron	TM9SF4 +	chr2L_8_13760001	chr2L_13760001	RAL-352
167	chr2L	13853088	13853106	chr2L	13862237	13862256	roo	5	9150	5.0	1.0	3.0	1.2	9168	chr2L	13853088	intron	CenG1A +	chr2L	13857672	intron	CenG1A +	chr2L	13862256	intron	CenG1A +	chr2L_5_13855001	chr2L_13855001	RAL-352
176	chr2L	14803886	14803904	chr2L	14809081	14809104	copia	5	5198	4.5	4.0	4.2	1.0	5218	chr2L	14803886	intergenic	not near genes	chr2L	14806495	intergenic	not near genes	chr2L	14809104	intergenic	not near genes	chr2L_5_14805001	chr2L_14805001	RAL-352
184	chr2L	15446065	15446080	chr2L	15453531	15453549	blood	4	7466	2.5	1.5	2.0	1.3	7484	chr2L	15446065	intergenic	not near genes	chr2L	15449807	intergenic	not near genes	chr2L	15453549	intergenic	not near genes	chr2L_4_15445001	chr2L_15445001	RAL-352
185	chr2L	15956024	15956053	chr2L	15957490	15957502	hobo	7	1464	2.5	1.5	2.0	2.3	1478	chr2L	15956024	intron	beat-Ib -	chr2L	15956763	intron	beat-Ib -	chr2L	15957502	intron	beat-Ib -	chr2L_7_15955001	chr2L_15955001	RAL-352
186	chr2L	16071771	16071771	chr2L	16217660	16217660	copia	10	145889	15.0	16.0	15.5	0.6	145889	chr2L	16071771	intron	beat-Ia +	chr2L	16144716	intergenic	not near genes	chr2L	16217660	intergenic	not near genes	chr2L_10_16140001	chr2L_16140001	RAL-352
187	chr2L	16141170	16141187	chr2L	16146377	16146394	copia	7	5207	2.5	3.0	2.8	1.8	5224	chr2L	16141170	intergenic	not near genes	chr2L	16143782	intergenic	not near genes	chr2L	16146394	intergenic	not near genes	chr2L_7_16140001	chr2L_16140001	RAL-352
189	chr2L	16071771	16071771	chr2L	16217660	16217660	copia	5	145889	15.0	16.0	15.5	0.3	145889	chr2L	16071771	intron	beat-Ia +	chr2L	16144716	intergenic	not near genes	chr2L	16217660	intergenic	not near genes	chr2L_5_16140001	chr2L_16140001	RAL-352
190	chr2L	16280254	16280288	chr2L	16281420	16281435	1360	10	1159	5.0	4.0	4.5	1.8	1181	chr2L	16280254	intron	crp -	chr2L	16280844	intron	crp -	chr2L	16281435	intron	crp -	chr2L_10_16280001	chr2L_16280001	RAL-352
194	chr2L	16958106	16958135	chr2L	16962894	16962923	Doc	6	4788	1.5	1.5	1.5	2.4	4817	chr2L	16958106	intergenic	not near genes	chr2L	16960514	intergenic	not near genes	chr2L	16962923	intergenic	not near genes	chr2L_6_16960001	chr2L_16960001	RAL-352
197	chr2L	17273190	17273224	chr2L	17277973	17278006	F-element	7	4777	2.0	4.5	3.2	1.7	4816	chr2L	17273190	intergenic	not near genes	chr2L	17275598	intergenic	not near genes	chr2L	17278006	intergenic	not near genes	chr2L_7_17275001	chr2L_17275001	RAL-352
200	chr2L	17819921	17819950	chr2L	17825124	17825153	copia	4	5199	1.0	5.0	3.0	1.0	5232	chr2L	17819921	intron	CadN2 -	chr2L	17822537	intron	CadN2 -	chr2L	17825153	intron	CadN2 -	chr2L_4_17820001	chr2L_17820001	RAL-352
202	chr2L	17951952	17951972	chr2L	17953410	17953433	hobo	4	1463	0.5	1.5	1.0	2.0	1481	chr2L	17951952	intergenic	CR44398 -,CR44397 -	chr2L	17952692	intergenic	not near genes	chr2L	17953433	intergenic	not near genes	chr2L_4_17950001	chr2L_17950001	RAL-352
203	chr2L	18051875	18051907	chr2L	18061021	18061041	roo	11	9143	1.0	1.0	1.0	5.5	9166	chr2L	18051875	intron	rdo +	chr2L	18056458	intron	rdo +	chr2L	18061041	intron	rdo +	chr2L_11_18055001	chr2L_18055001	RAL-352
215	chr2L	19147373	19147401	chr2L	19154408	19154435	297	10	7035	1.5	2.0	1.8	3.6	7062	chr2L	19147373	intron	brat +	chr2L	19150904	intron	brat +	chr2L	19154435	intron	brat +	chr2L_10_19150001	chr2L_19150001	RAL-352
219	chr2L	19345018	19345046	chr2L	19357227	19357255	blood	7	12208	3.5	4.5	4.0	1.4	12237	chr2L	19345018	intron	dnt -	chr2L	19351136	intron	dnt -	chr2L	19357255	intron	dnt -	chr2L_7_19350001	chr2L_19350001	RAL-352
225	chr2L	19620096	19620131	chr2L	19621085	19621119	jockey	14	982	5.0	8.0	6.5	1.9	1023	chr2L	19620096	intron	Lar +	chr2L	19620608	intron	Lar +	chr2L	19621119	intron	Lar +	chr2L_14_19620001	chr2L_19620001	RAL-352
226	chr2L	19652571	19652584	chr2L	19674005	19674020	opus	4	21435	8.5	1.0	4.8	0.7	21449	chr2L	19652571	intron	Lar +	chr2L	19663296	intron	Lar +	chr2L	19674020	intron	Lar +	chr2L_4_19660001	chr2L_19660001	RAL-352
227	chr2L	19703538	19703562	chr2L	19712673	19712693	roo	11	9132	4.5	0.5	2.5	3.1	9155	chr2L	19703538	intron	Lar +	chr2L	19708116	intron	Lar +	chr2L	19712693	intron	Lar +	chr2L_11_19705001	chr2L_19705001	RAL-352
228	chr2L	19737362	19737389	chr2L	19740830	19740855	1360	8	3463	8.5	13.0	10.8	0.7	3493	chr2L	19737362	intergenic	Nf-YB +	chr2L	19739108	intergenic	not near genes	chr2L	19740855	intergenic	not near genes	chr2L_8_19735001	chr2L_19735001	RAL-352
229	chr2L	19762810	19762838	chr2L	19763052	19763080	pogo	4	238	2.0	2.5	2.2	1.2	270	chr2L	19762810	5` UTR	fbp -	chr2L	19762945	intron	fbp -	chr2L	19763080	intron	fbp -	chr2L_4_19760001	chr2L_19760001	RAL-352
237	chr2L	20272120	20272144	chr2L	20282822	20282855	copia	5	10709	1.5	2.5	2.0	1.7	10735	chr2L	20272120	intergenic	not near genes	chr2L	20277488	intergenic	not near genes	chr2L	20282855	intergenic	not near genes	chr2L_5_20275001	chr2L_20275001	RAL-352
239	chr2L	20468379	20468400	chr2L	20468483	20468498	INE-1	4	102	6.0	4.5	5.2	0.6	119	chr2L	20468379	intron	CR44980 -	chr2L	20468438	intron	CR44980 -	chr2L	20468498	intron	CR44980 -	chr2L_4_20465001	chr2L_20465001	RAL-352
241	chr2L	20576219	20576246	chr2L	20583687	20583715	blood	10	7468	5.0	3.0	4.0	2.0	7496	chr2L	20576219	intergenic	CR45347 +	chr2L	20579967	intergenic	not near genes	chr2L	20583715	3` UTR	CR44909 -	chr2L_10_20575001	chr2L_20575001	RAL-352
245	chr2L	21020273	21020310	chr2L	21023948	21023984	NOF	9	3674	2.0	3.0	2.5	2.6	3711	chr2L	21020273	intron	CG42238 -	chr2L	21022128	intron	CG42238 -	chr2L	21023984	intron	CG42238 -	chr2L_9_21020001	chr2L_21020001	RAL-352
246	chr2L	21041137	21041167	chr2L	21049398	21049428	Tirant	4	8260	0.5	3.5	2.0	1.3	8291	chr2L	21041137	intron	CG42238 -	chr2L	21045282	intron	CG42238 -	chr2L	21049428	intron	CG42238 -	chr2L_4_21045001	chr2L_21045001	RAL-352
253	chr2L	21981687	21981707	chr2L	21990850	21990872	roo	10	9164	4.0	5.0	4.5	1.8	9185	chr2L	21981687	exon	CG2528 -	chr2L	21986280	intron	CG2528 -	chr2L	21990872	exon	CG2528 -	chr2L_10_21985001	chr2L_21985001	RAL-352
254	chr2R	529330	529356	chr2R	537955	537981	Max-element	7	8620	2.5	3.0	2.8	1.8	8651	chr2R	529330	intron	CG40378 +	chr2R	533656	intron	CG40378 +	chr2R	537981	intron	CG40378 +	chr2R_7_530001	chr2R_530001	RAL-352
255	chr2R	1082373	1082384	chr2R	1087126	1087160	Doc	8	4766	7.0	1.5	4.2	1.5	4787	chr2R	1082373	intron	rl +	chr2R	1084766	intron	rl +	chr2R	1087160	intron	rl +	chr2R_8_1080001	chr2R_1080001	RAL-352
259	chr2R	3144097	3144109	chr2R	3393366	3393378	Doc	6	249274	10.0	5.0	7.5	0.7	249281	chr2R	3144097	intron	CG42596 +	chr2R	3268738	intergenic	not near genes	chr2R	3393378	intergenic	not near genes	chr2R_6_3265001	chr2R_3265001	RAL-352
263	chr2R	4622957	4622988	chr2R	4624111	4624147	1360	9	1156	9.0	9.5	9.2	0.9	1190	chr2R	4622957	intergenic	CR44101 -	chr2R	4623552	intergenic	not near genes	chr2R	4624147	intergenic	not near genes	chr2R_9_4620001	chr2R_4620001	RAL-352
264	chr2R	4624651	4624669	chr2R	4626545	4626572	Bica	6	1902	10.0	9.0	9.5	0.6	1921	chr2R	4624651	intergenic	not near genes	chr2R	4625612	intergenic	not near genes	chr2R	4626572	intergenic	not near genes	chr2R_6_4625001	chr2R_4625001	RAL-352
277	chr2R	5869274	5869304	chr2R	5874350	5874360	flea	6	5072	2.0	0.0	1.0	3.0	5086	chr2R	5869274	intergenic	not near genes	chr2R	5871817	intergenic	not near genes	chr2R	5874360	intergenic	not near genes	chr2R_6_5870001	chr2R_5870001	RAL-352
280	chr2R	6096737	6096751	chr2R	6101917	6101944	BS	6	5190	5.0	3.0	4.0	1.2	5207	chr2R	6096737	intron	EcR -	chr2R	6099340	intron	EcR -	chr2R	6101944	intron	EcR -	chr2R_6_6095001	chr2R_6095001	RAL-352
281	chr2R	6494537	6494553	chr2R	6499292	6499315	F-element	4	4760	2.5	2.0	2.2	1.2	4778	chr2R	6494537	intergenic	not near genes	chr2R	6496926	intergenic	not near genes	chr2R	6499315	intergenic	not near genes	chr2R_4_6495001	chr2R_6495001	RAL-352
286	chr2R	7139950	7139956	chr2R	7141416	7141448	hopper2	6	1479	2.5	4.0	3.2	1.4	1498	chr2R	7139950	intergenic	not near genes	chr2R	7140699	intergenic	not near genes	chr2R	7141448	intergenic	not near genes	chr2R_6_7140001	chr2R_7140001	RAL-352
288	chr2R	7235820	7235850	chr2R	7240910	7240918	jockey	12	5086	3.5	3.5	3.5	2.7	5098	chr2R	7235820	intergenic	not near genes	chr2R	7238369	intergenic	not near genes	chr2R	7240918	intergenic	not near genes	chr2R_12_7235001	chr2R_7235001	RAL-352
290	chr2R	7434893	7434917	chr2R	7439193	7439218	Juan	4	4301	0.5	3.5	2.0	1.3	4325	chr2R	7434893	intergenic	so +	chr2R	7437056	intergenic	not near genes	chr2R	7439218	intergenic	not near genes	chr2R_4_7435001	chr2R_7435001	RAL-352
293	chr2R	7815687	7815698	chr2R	7822142	7822167	Burdock	4	6465	3.5	2.5	3.0	1.0	6480	chr2R	7815687	intergenic	CG1882 +	chr2R	7818927	intergenic	not near genes	chr2R	7822167	3` UTR	cathD -	chr2R_4_7815001	chr2R_7815001	RAL-352
294	chr2R	7869186	7869222	chr2R	7873972	7873976	Doc	5	4777	3.5	5.5	4.5	0.9	4790	chr2R	7869186	intron	Dgk -	chr2R	7871581	intron	Dgk -	chr2R	7873976	intron	Dgk -	chr2R_5_7870001	chr2R_7870001	RAL-352
296	chr2R	8330861	8330887	chr2R	8331347	8331373	roo	9	484	4.5	2.5	3.5	2.0	512	chr2R	8330861	intron	pdm3 +	chr2R	8331117	intron	pdm3 +	chr2R	8331373	intron	pdm3 +	chr2R_9_8330001	chr2R_8330001	RAL-352
298	chr2R	8398218	8398244	chr2R	8402999	8403025	Doc	7	4780	2.0	4.0	3.0	1.8	4807	chr2R	8398218	intron	CG2121 -	chr2R	8400622	intron	CG2121 -	chr2R	8403025	intron	CG2121 -	chr2R_7_8400001	chr2R_8400001	RAL-352
303	chr2R	8722772	8722786	chr2R	8723008	8723009	pogo	10	238	7.0	4.5	5.8	1.5	237	chr2R	8722772	intron	CG14767 -	chr2R	8722890	intron	CG14767 -	chr2R	8723009	intron	CG14767 -	chr2R_10_8720001	chr2R_8720001	RAL-352
304	chr2R	8722789	8722794	chr2R	8723006	8723035	pogo	4	232	4.0	3.0	3.5	0.9	246	chr2R	8722789	intron	CG14767 -	chr2R	8722912	intron	CG14767 -	chr2R	8723035	intron	CG14767 -	chr2R_4_8720001	chr2R_8720001	RAL-352
308	chr2R	9212703	9212721	chr2R	9213177	9213207	roo	5	483	5.0	2.5	3.8	1.0	504	chr2R	9212703	intergenic	CR45309 +	chr2R	9212955	intergenic	CR45309 +	chr2R	9213207	5` UTR	CR45309 +	chr2R_5_9210001	chr2R_9210001	RAL-352
316	chr2R	10005866	10005884	chr2R	10007021	10007030	1360	6	1160	10.0	13.0	11.5	0.5	1164	chr2R	10005866	intron	Pka-R2 -	chr2R	10006448	intron	Pka-R2 -	chr2R	10007030	intron	Pka-R2 -	chr2R_6_10005001	chr2R_10005001	RAL-352
324	chr2R	10585579	10585590	chr2R	10594150	10594167	Tirant	4	8575	2.5	4.5	3.5	0.9	8588	chr2R	10585579	intron	psq +	chr2R	10589873	intron	psq +	chr2R	10594167	intron	psq +	chr2R_4_10585001	chr2R_10585001	RAL-352
327	chr2R	10948035	10948061	chr2R	10955580	10955607	17.6	9	7542	1.0	6.5	3.8	1.9	7572	chr2R	10948035	intergenic	not near genes	chr2R	10951821	intergenic	not near genes	chr2R	10955607	intergenic	not near genes	chr2R_9_10950001	chr2R_10950001	RAL-352
330	chr2R	11009818	11009846	chr2R	11018992	11019018	roo	12	9172	2.5	3.0	2.8	3.2	9200	chr2R	11009818	intron	luna -	chr2R	11014418	intron	luna -	chr2R	11019018	intron	luna -	chr2R_12_11010001	chr2R_11010001	RAL-352
331	chr2R	11019878	11019914	chr2R	11024944	11024965	jockey	10	5058	1.5	0.0	0.8	5.6	5087	chr2R	11019878	intron	luna -	chr2R	11022422	intron	luna -	chr2R	11024965	intron	luna -	chr2R_10_11020001	chr2R_11020001	RAL-352
333	chr2R	11207814	11207848	chr2R	11208007	11208039	BS	10	188	2.5	2.0	2.2	3.1	225	chr2R	11207814	intron	shn +	chr2R	11207926	intron	shn +	chr2R	11208039	intron	shn +	chr2R_10_11205001	chr2R_11205001	RAL-352
335	chr2R	11415541	11415551	chr2R	11418673	11418699	opus	4	3138	2.5	5.0	3.8	0.8	3158	chr2R	11415541	intron	Drip -	chr2R	11417120	intron	Drip -	chr2R	11418699	intron	Drip -	chr2R_4_11415001	chr2R_11415001	RAL-352
337	chr2R	11472650	11472674	chr2R	11473847	11473871	pogo	7	1195	4.5	2.0	3.2	1.7	1221	chr2R	11472650	intergenic	not near genes	chr2R	11473260	intergenic	not near genes	chr2R	11473871	intergenic	not near genes	chr2R_7_11470001	chr2R_11470001	RAL-352
346	chr2R	12481149	12481168	chr2R	12482939	12482972	roo	5	1794	2.5	3.5	3.0	1.2	1823	chr2R	12481149	exon	Dh44-R2 +	chr2R	12482060	intron	Dh44-R2 +	chr2R	12482972	intron	Dh44-R2 +	chr2R_5_12480001	chr2R_12480001	RAL-352
347	chr2R	12501699	12501729	chr2R	12503857	12503864	Rt1c	9	2148	3.0	5.0	4.0	1.8	2165	chr2R	12501699	intron	fdl -	chr2R	12502782	intron	fdl -	chr2R	12503864	intron	fdl -	chr2R_9_12500001	chr2R_12500001	RAL-352
350	chr2R	12819472	12819475	chr2R	12824534	12824544	jockey	4	5066	4.0	8.0	6.0	0.6	5072	chr2R	12819472	intergenic	not near genes	chr2R	12822008	intergenic	not near genes	chr2R	12824544	intergenic	not near genes	chr2R_4_12820001	chr2R_12820001	RAL-352
353	chr2R	13136836	13136842	chr2R	13141634	13141634	Doc	4	4796	7.0	4.5	5.8	0.6	4798	chr2R	13136836	exon	Cap-G +	chr2R	13139235	intron	Cap-G +	chr2R	13141634	intron	Cap-G +	chr2R_4_13135001	chr2R_13135001	RAL-352
354	chr2R	13136843	13136865	chr2R	13141632	13141659	Doc	7	4793	5.0	3.5	4.2	1.3	4816	chr2R	13136843	exon	Cap-G +	chr2R	13139251	intron	Cap-G +	chr2R	13141659	intron	Cap-G +	chr2R_7_13135001	chr2R_13135001	RAL-352
363	chr2R	13905611	13905629	chr2R	13907584	13907604	Rt1a	4	1974	5.5	4.5	5.0	0.7	1993	chr2R	13905611	intron	shot -	chr2R	13906608	intron	shot -	chr2R	13907604	intron	shot -	chr2R_4_13905001	chr2R_13905001	RAL-352
367	chr2R	14467305	14467327	chr2R	14476463	14476484	roo	12	9155	2.0	3.0	2.5	3.4	9179	chr2R	14467305	intergenic	not near genes	chr2R	14471894	intergenic	not near genes	chr2R	14476484	5` UTR	CR44462 +	chr2R_12_14470001	chr2R_14470001	RAL-352
374	chr2R	15004737	15004753	chr2R	15005054	15005082	jockey	5	326	2.0	2.0	2.0	1.7	345	chr2R	15004737	intergenic	not near genes	chr2R	15004910	intergenic	not near genes	chr2R	15005082	intergenic	not near genes	chr2R_5_15000001	chr2R_15000001	RAL-352
375	chr2R	15015454	15015488	chr2R	15022878	15022912	mdg1	11	7422	2.0	4.5	3.2	2.6	7458	chr2R	15015454	intron	hbs +	chr2R	15019183	intron	hbs +	chr2R	15022912	intron	hbs +	chr2R_11_15015001	chr2R_15015001	RAL-352
377	chr2R	15084977	15085006	chr2R	15092026	15092055	297	5	7048	1.5	2.0	1.8	1.8	7078	chr2R	15084977	intergenic	not near genes	chr2R	15088516	intergenic	not near genes	chr2R	15092055	5` UTR	CR44457 +	chr2R_5_15085001	chr2R_15085001	RAL-352
379	chr2R	15119320	15119350	chr2R	15127801	15127830	Tirant	9	8480	5.5	3.0	4.2	1.7	8510	chr2R	15119320	intron	chn +	chr2R	15123575	intron	chn +	chr2R	15127830	intron	chn +	chr2R_9_15120001	chr2R_15120001	RAL-352
398	chr2R	17147245	17147251	chr2R	17152276	17152282	jockey	4	5031	8.5	5.5	7.0	0.5	5037	chr2R	17147245	intergenic	not near genes	chr2R	17149764	intergenic	not near genes	chr2R	17152282	intergenic	not near genes	chr2R_4_17145001	chr2R_17145001	RAL-352
399	chr2R	17176361	17176378	chr2R	17182551	17182568	diver	5	6189	2.0	4.5	3.2	1.2	6207	chr2R	17176361	intergenic	not near genes	chr2R	17179464	intergenic	not near genes	chr2R	17182568	intergenic	not near genes	chr2R_5_17175001	chr2R_17175001	RAL-352
403	chr2R	17485933	17485941	chr2R	17490685	17490696	F-element	4	4754	0.5	4.0	2.2	1.2	4763	chr2R	17485933	5` UTR,intron	CG43110 -,NT5E-2 +	chr2R	17488314	intron	NT5E-2 +	chr2R	17490696	intron	NT5E-2 +	chr2R_4_17485001	chr2R_17485001	RAL-352
405	chr2R	17784033	17784057	chr2R	17784266	17784298	pogo	10	238	2.5	2.5	2.5	2.9	265	chr2R	17784033	intergenic	mir-31a -	chr2R	17784166	intergenic	mir-31a -	chr2R	17784298	intergenic	mir-31a -	chr2R_10_17780001	chr2R_17780001	RAL-352
410	chr2R	18358395	18358409	chr2R	18372605	18372621	roo	4	14212	5.0	2.0	3.5	0.9	14226	chr2R	18358395	intergenic	not near genes	chr2R	18365508	intergenic	not near genes	chr2R	18372621	intergenic	not near genes	chr2R_4_18365001	chr2R_18365001	RAL-352
411	chr2R	18575812	18575827	chr2R	18581983	18582010	3S18	10	6183	5.5	6.5	6.0	1.4	6198	chr2R	18575812	intron	GEFmeso -	chr2R	18578911	intron	GEFmeso -	chr2R	18582010	intron	GEFmeso -	chr2R_10_18575001	chr2R_18575001	RAL-352
412	chr2R	18590868	18590894	chr2R	18600019	18600046	roo	7	9151	4.5	3.0	3.8	1.5	9178	chr2R	18590868	intron	GEFmeso -	chr2R	18595457	intron	GEFmeso -	chr2R	18600046	intron	GEFmeso -	chr2R_7_18595001	chr2R_18595001	RAL-352
419	chr2R	19776597	19776628	chr2R	19779920	19779951	jockey	5	3323	3.5	2.0	2.8	1.3	3354	chr2R	19776597	intergenic	not near genes	chr2R	19778274	intergenic	not near genes	chr2R	19779951	intergenic	not near genes	chr2R_5_19775001	chr2R_19775001	RAL-352
420	chr2R	19957435	19957455	chr2R	19962630	19962655	copia	5	5199	5.0	1.0	3.0	1.2	5220	chr2R	19957435	intergenic	CG44623 +	chr2R	19960045	intergenic	not near genes	chr2R	19962655	intergenic	not near genes	chr2R_5_19960001	chr2R_19960001	RAL-352
427	chr2R	20739441	20739479	chr2R	20744209	20744247	F-element	9	4766	1.0	2.0	1.5	3.6	4806	chr2R	20739441	intron	dpr +	chr2R	20741844	intron	dpr +	chr2R	20744247	intron	dpr +	chr2R_9_20740001	chr2R_20740001	RAL-352
431	chr2R	21151117	21151146	chr2R	21153750	21153779	opus	7	2632	4.5	2.5	3.5	1.6	2662	chr2R	21151117	intron	CG30389 -	chr2R	21152448	intron	CG30389 -	chr2R	21153779	intron	CG30389 -	chr2R_7_21150001	chr2R_21150001	RAL-352
436	chr2R	21753086	21753116	chr2R	21753571	21753601	roo	9	482	4.5	1.0	2.8	2.4	515	chr2R	21753086	intergenic	not near genes	chr2R	21753344	intergenic	not near genes	chr2R	21753601	intergenic	not near genes	chr2R_9_21750001	chr2R_21750001	RAL-352
445	chr2R	22360383	22360409	chr2R	22360816	22360830	jockey	4	424	6.0	2.0	4.0	0.8	447	chr2R	22360383	intron	Liprin-gamma -	chr2R	22360606	intron	Liprin-gamma -	chr2R	22360830	intron	Liprin-gamma -	chr2R_4_22360001	chr2R_22360001	RAL-352
448	chr2R	22525747	22525785	chr2R	22529302	22529340	jockey	10	3552	2.0	3.5	2.8	2.6	3593	chr2R	22525747	intron	px -	chr2R	22527544	intron	px -	chr2R	22529340	intron	px -	chr2R_10_22525001	chr2R_22525001	RAL-352
450	chr2R	22774962	22774991	chr2R	22775381	22775409	jockey	6	418	4.0	1.0	2.5	1.7	447	chr2R	22774962	intron	CG42260 -	chr2R	22775186	intron	CG42260 -	chr2R	22775409	intron	CG42260 -	chr2R_6_22775001	chr2R_22775001	RAL-352
460	chr2R	23529587	23529604	chr2R	23537149	23537162	412	5	7561	5.0	4.0	4.5	0.9	7575	chr2R	23529587	intron	bw -	chr2R	23533374	intron	bw -	chr2R	23537162	exon	bw -	chr2R_5_23530001	chr2R_23530001	RAL-352
472	chr2R	24353434	24353453	chr2R	24361791	24361812	roo	4	8356	3.5	6.0	4.8	0.7	8378	chr2R	24353434	intron,intron	bs +,CR44811 -	chr2R	24357623	intron,intron	bs +,CR44811 -	chr2R	24361812	intron,intron	bs +,CR44811 -	chr2R_4_24355001	chr2R_24355001	RAL-352
477	chr2R	24647606	24647614	chr2R	24655161	24655170	412	5	7554	0.0	5.0	2.5	1.4	7564	chr2R	24647606	intergenic	not near genes	chr2R	24651388	intergenic	not near genes	chr2R	24655170	intergenic	not near genes	chr2R_5_24650001	chr2R_24650001	RAL-352
479	chr2R	24727890	24727917	chr2R	24735395	24735425	mdg1	9	7503	1.5	3.5	2.5	2.6	7535	chr2R	24727890	intron	Mid1 -	chr2R	24731658	intron	Mid1 -	chr2R	24735425	intron	Mid1 -	chr2R_9_24730001	chr2R_24730001	RAL-352
481	chr2R	24763634	24763640	chr2R	24765586	24765616	G2	4	1967	5.0	6.5	5.8	0.6	1982	chr2R	24763634	exon	CG3894 +	chr2R	24764625	intron	CG3894 +	chr2R	24765616	exon	CG3894 +	chr2R_4_24760001	chr2R_24760001	RAL-352
490	chr3L	110214	110226	chr3L	119380	119393	roo	4	9167	2.0	3.0	2.5	1.1	9179	chr3L	110214	intergenic	not near genes	chr3L	114804	intergenic	not near genes	chr3L	119393	intergenic	not near genes	chr3L_4_110001	chr3L_110001	RAL-352
495	chr3L	402687	402717	chr3L	409740	409769	297	17	7049	6.0	3.5	4.8	2.9	7082	chr3L	402687	intergenic	not near genes	chr3L	406228	intergenic	not near genes	chr3L	409769	intergenic	not near genes	chr3L_17_405001	chr3L_405001	RAL-352
500	chr3L	858001	858025	chr3L	866478	866486	Tirant	9	8470	4.0	2.5	3.2	2.1	8485	chr3L	858001	intergenic	not near genes	chr3L	862244	intergenic	not near genes	chr3L	866486	intergenic	CG12502 +	chr3L_9_860001	chr3L_860001	RAL-352
501	chr3L	925175	925201	chr3L	932601	932627	mdg1	10	7424	2.5	1.0	1.8	3.6	7452	chr3L	925175	intron	Glut1 +	chr3L	928901	intron	Glut1 +	chr3L	932627	intron	Glut1 +	chr3L_10_925001	chr3L_925001	RAL-352
504	chr3L	1154135	1154151	chr3L	1163280	1163300	roo	4	9148	2.0	2.0	2.0	1.3	9165	chr3L	1154135	intron	bab2 -	chr3L	1158718	intron	bab2 -	chr3L	1163300	intron	bab2 -	chr3L_4_1155001	chr3L_1155001	RAL-352
506	chr3L	1219597	1219623	chr3L	1227328	1227339	412	9	7730	3.0	7.0	5.0	1.5	7742	chr3L	1219597	intron	mwh +	chr3L	1223468	intron	mwh +	chr3L	1227339	intron	mwh +	chr3L_9_1220001	chr3L_1220001	RAL-352
512	chr3L	1505999	1506026	chr3L	1513596	1513623	17.6	7	7596	3.0	3.0	3.0	1.8	7624	chr3L	1505999	intron,intron	Psa +,cue -	chr3L	1509811	intron,intron	Psa +,cue -	chr3L	1513623	intron,intron	Psa +,cue -	chr3L_7_1505001	chr3L_1505001	RAL-352
515	chr3L	1740856	1740867	chr3L	1741100	1741112	pogo	4	242	2.5	1.5	2.0	1.3	256	chr3L	1740856	intron	Gk +	chr3L	1740984	intron	Gk +	chr3L	1741112	intron	Gk +	chr3L_4_1740001	chr3L_1740001	RAL-352
522	chr3L	2447531	2447537	chr3L	2456664	2456693	roo	6	9146	1.0	5.5	3.2	1.4	9162	chr3L	2447531	intron	CG45186 +	chr3L	2452112	intron	CG45186 +	chr3L	2456693	intron	CG45186 +	chr3L_6_2450001	chr3L_2450001	RAL-352
527	chr3L	3061299	3061315	chr3L	3069867	3069898	Tirant	6	8578	1.5	3.5	2.5	1.7	8599	chr3L	3061299	intron	CG32486 -	chr3L	3065598	intron	CG32486 -	chr3L	3069898	intron	CG32486 -	chr3L_6_3065001	chr3L_3065001	RAL-352
529	chr3L	3281446	3281475	chr3L	3281935	3281965	Doc	20	491	3.0	6.5	4.8	3.4	519	chr3L	3281446	intron	CG12017 +	chr3L	3281706	intron	CG12017 +	chr3L	3281965	intron	CG12017 +	chr3L_20_3280001	chr3L_3280001	RAL-352
530	chr3L	3475089	3475105	chr3L	3475533	3475549	jockey	4	444	1.5	7.5	4.5	0.7	460	chr3L	3475089	intron	CG42324 +	chr3L	3475319	intron	CG42324 +	chr3L	3475549	intron	CG42324 +	chr3L_4_3475001	chr3L_3475001	RAL-352
534	chr3L	3601305	3601326	chr3L	3606616	3606637	copia	11	5309	3.5	1.5	2.5	3.1	5332	chr3L	3601305	intron	Eip63E +	chr3L	3603971	intron	Eip63E +	chr3L	3606637	intron	Eip63E +	chr3L_11_3600001	chr3L_3600001	RAL-352
544	chr3L	4901134	4901157	chr3L	4907324	4907343	diver	4	6189	2.0	0.0	1.0	2.0	6209	chr3L	4901134	intergenic	CG13704 +	chr3L	4904238	intergenic	not near genes	chr3L	4907343	intergenic	not near genes	chr3L_4_4900001	chr3L_4900001	RAL-352
545	chr3L	5034170	5034192	chr3L	5043321	5043343	roo	4	9152	1.5	1.0	1.2	1.8	9173	chr3L	5034170	intron	Con -	chr3L	5038756	intron	Con -	chr3L	5043343	intron	Con -	chr3L_4_5035001	chr3L_5035001	RAL-352
553	chr3L	5910034	5910058	chr3L	5910275	5910299	pogo	9	241	0.5	3.5	2.0	3.0	265	chr3L	5910034	intron	CG13288 +	chr3L	5910166	intron	CG13288 +	chr3L	5910299	intron	CG13288 +	chr3L_9_5910001	chr3L_5910001	RAL-352
554	chr3L	5926318	5926352	chr3L	5926502	5926511	BS	15	175	2.5	4.0	3.2	3.6	193	chr3L	5926318	intron	Vap-33B +	chr3L	5926414	intron	Vap-33B +	chr3L	5926511	intron	Vap-33B +	chr3L_15_5925001	chr3L_5925001	RAL-352
559	chr3L	6220918	6220945	chr3L	6230065	6230082	roo	13	9148	4.0	4.0	4.0	2.6	9164	chr3L	6220918	5` UTR	pncr008:3L +	chr3L	6225500	intergenic	not near genes	chr3L	6230082	intergenic	not near genes	chr3L_13_6225001	chr3L_6225001	RAL-352
565	chr3L	6855933	6855945	chr3L	6860717	6860729	Doc	5	4784	3.0	3.5	3.2	1.2	4796	chr3L	6855933	intergenic	not near genes	chr3L	6858331	intergenic	not near genes	chr3L	6860729	intergenic	not near genes	chr3L_5_6855001	chr3L_6855001	RAL-352
566	chr3L	6887519	6887548	chr3L	6895011	6895040	roo	5	7491	2.5	3.5	3.0	1.2	7521	chr3L	6887519	intergenic	not near genes	chr3L	6891280	intergenic	not near genes	chr3L	6895040	intergenic	not near genes	chr3L_5_6890001	chr3L_6890001	RAL-352
574	chr3L	7377322	7377344	chr3L	7380427	7380449	297	7	3103	0.5	2.5	1.5	2.8	3127	chr3L	7377322	intron	SMSr -	chr3L	7378886	intron	SMSr -	chr3L	7380449	intron	SMSr -	chr3L_7_7375001	chr3L_7375001	RAL-352
582	chr3L	7793725	7793745	chr3L	7800773	7800797	297	4	7048	0.5	3.5	2.0	1.3	7072	chr3L	7793725	intron	CG32369 -	chr3L	7797261	intron	CG32369 -	chr3L	7800797	intron	CG32369 -	chr3L_4_7795001	chr3L_7795001	RAL-352
583	chr3L	7886522	7886541	chr3L	7889039	7889059	Stalker4	5	2518	1.0	2.0	1.5	2.0	2537	chr3L	7886522	intron	CG32365 +	chr3L	7887790	intron	CG32365 +	chr3L	7889059	intron	CG32365 +	chr3L_5_7885001	chr3L_7885001	RAL-352
584	chr3L	7985361	7985389	chr3L	7987689	7987710	NOF	6	2324	2.5	2.5	2.5	1.7	2349	chr3L	7985361	intron	nmo +	chr3L	7986536	intron	nmo +	chr3L	7987710	intron	nmo +	chr3L_6_7985001	chr3L_7985001	RAL-352
593	chr3L	9076925	9076958	chr3L	9084485	9084518	412	14	7559	6.0	5.0	5.5	2.2	7593	chr3L	9076925	exon	Tequila +	chr3L	9080722	intron	Tequila +	chr3L	9084518	exon	Tequila +	chr3L_14_9080001	chr3L_9080001	RAL-352
594	chr3L	9130564	9130582	chr3L	9134318	9134343	412	4	3755	5.0	3.5	4.2	0.8	3779	chr3L	9130564	intergenic	bol -	chr3L	9132454	intergenic	not near genes	chr3L	9134343	intergenic	Dhpr +	chr3L_4_9130001	chr3L_9130001	RAL-352
595	chr3L	9219244	9219268	chr3L	9219916	9219919	jockey	11	666	6.5	2.5	4.5	2.0	675	chr3L	9219244	intergenic	not near genes	chr3L	9219582	intergenic	not near genes	chr3L	9219919	intergenic	not near genes	chr3L_11_9215001	chr3L_9215001	RAL-352
596	chr3L	9270617	9270646	chr3L	9278371	9278401	roo	8	7749	1.5	2.5	2.0	2.7	7784	chr3L	9270617	intron	GluRIB +	chr3L	9274509	intron	GluRIB +	chr3L	9278401	exon	GluRIB +	chr3L_8_9270001	chr3L_9270001	RAL-352
601	chr3L	9533776	9533786	chr3L	9541312	9541322	412	4	7547	2.5	4.0	3.2	1.0	7546	chr3L	9533776	intergenic	not near genes	chr3L	9537549	intergenic	not near genes	chr3L	9541322	intergenic	not near genes	chr3L_4_9535001	chr3L_9535001	RAL-352
603	chr3L	9575909	9575944	chr3L	9580987	9581002	jockey	9	5075	4.5	4.0	4.2	1.7	5093	chr3L	9575909	intron	CG42673 +	chr3L	9578456	intron	CG42673 +	chr3L	9581002	intron	CG42673 +	chr3L_9_9575001	chr3L_9575001	RAL-352
617	chr3L	11087062	11087084	chr3L	11088850	11088872	S-element	6	1788	1.5	1.0	1.2	2.7	1810	chr3L	11087062	intron	JIL-1 -	chr3L	11087967	intron	JIL-1 -	chr3L	11088872	intron	JIL-1 -	chr3L_6_11085001	chr3L_11085001	RAL-352
618	chr3L	11105304	11105309	chr3L	11107014	11107020	X-element	4	1710	4.0	1.5	2.8	1.1	1716	chr3L	11105304	intergenic	not near genes	chr3L	11106162	intergenic	not near genes	chr3L	11107020	3` UTR	CG32073 -	chr3L_4_11105001	chr3L_11105001	RAL-352
622	chr3L	11723082	11723111	chr3L	11727877	11727906	Doc	5	4795	2.0	0.5	1.2	2.3	4824	chr3L	11723082	3` UTR	Bmcp +	chr3L	11725494	intron	Bmcp +	chr3L	11727906	3` UTR	Bmcp +	chr3L_5_11725001	chr3L_11725001	RAL-352
628	chr3L	11864564	11864580	chr3L	11865855	11865866	pogo	5	1292	4.0	2.0	3.0	1.2	1302	chr3L	11864564	intron	CG44837 -	chr3L	11865215	intron	CG44837 -	chr3L	11865866	intron	CG44837 -	chr3L_5_11865001	chr3L_11865001	RAL-352
641	chr3L	12919280	12919303	chr3L	12924763	12924776	Rt1c	7	5481	4.5	2.0	3.2	1.7	5496	chr3L	12919280	intergenic	not near genes	chr3L	12922028	intergenic	not near genes	chr3L	12924776	intergenic	not near genes	chr3L_7_12920001	chr3L_12920001	RAL-352
649	chr3L	13525155	13525190	chr3L	13532951	13532963	roo	15	7791	2.0	4.0	3.0	3.8	7808	chr3L	13525155	intergenic	not near genes	chr3L	13529059	intergenic	not near genes	chr3L	13532963	intergenic	not near genes	chr3L_15_13525001	chr3L_13525001	RAL-352
658	chr3L	14295981	14296015	chr3L	14296467	14296501	roo	8	485	3.0	0.0	1.5	3.2	520	chr3L	14295981	intron	fz +	chr3L	14296241	intron	fz +	chr3L	14296501	intron	fz +	chr3L_8_14295001	chr3L_14295001	RAL-352
662	chr3L	14468449	14468475	chr3L	14473655	14473681	copia	5	5205	1.5	1.5	1.5	2.0	5232	chr3L	14468449	intron	bbg -	chr3L	14471065	intron	bbg -	chr3L	14473681	intron	bbg -	chr3L_5_14470001	chr3L_14470001	RAL-352
666	chr3L	14721185	14721202	chr3L	14723024	14723040	Rt1c	6	1840	6.0	4.0	5.0	1.0	1855	chr3L	14721185	intron	ome +	chr3L	14722112	intron	ome +	chr3L	14723040	intron	ome +	chr3L_6_14720001	chr3L_14720001	RAL-352
668	chr3L	15085053	15085081	chr3L	15086219	15086247	1360	5	1164	0.5	1.0	0.8	2.8	1194	chr3L	15085053	intron	cp309 -	chr3L	15085650	intron	cp309 -	chr3L	15086247	intron	cp309 -	chr3L_5_15085001	chr3L_15085001	RAL-352
673	chr3L	15899237	15899261	chr3L	15899785	15899807	jockey	4	554	3.0	1.5	2.2	1.2	570	chr3L	15899237	intergenic	pHCl -	chr3L	15899522	intergenic	pHCl -	chr3L	15899807	intergenic	sff -	chr3L_4_15895001	chr3L_15895001	RAL-352
677	chr3L	16443857	16443870	chr3L	16446189	16446209	Doc	4	2338	0.5	2.5	1.5	1.6	2352	chr3L	16443857	intron,intron	CG33158 +,dsx-c73A -	chr3L	16445033	intron,intron	CG33158 +,dsx-c73A -	chr3L	16446209	intron,intron	CG33158 +,dsx-c73A -	chr3L_4_16445001	chr3L_16445001	RAL-352
678	chr3L	16494000	16494010	chr3L	16494515	16494526	jockey	7	515	2.5	8.5	5.5	1.1	526	chr3L	16494000	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494263	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494526	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L_7_16490001	chr3L_16490001	RAL-352
680	chr3L	16616513	16616539	chr3L	16621841	16621867	297	6	5328	0.0	0.0	0.0	6.0	5354	chr3L	16616513	3` UTR	Abl -	chr3L	16619190	3` UTR	Abl -	chr3L	16621867	3` UTR	Abl -	chr3L_6_16615001	chr3L_16615001	RAL-352
686	chr3L	16945751	16945757	chr3L	16954880	16954890	roo	6	9135	7.0	1.5	4.2	1.2	9139	chr3L	16945751	exon	Obp73a +	chr3L	16950320	intergenic	not near genes	chr3L	16954890	5` UTR	Nc73EF +	chr3L_6_16950001	chr3L_16950001	RAL-352
688	chr3L	17085016	17085037	chr3L	17094165	17094186	roo	6	9148	1.5	4.5	3.0	1.5	9170	chr3L	17085016	intron	Rbp6 -	chr3L	17089601	intron	Rbp6 -	chr3L	17094186	intron	Rbp6 -	chr3L_6_17085001	chr3L_17085001	RAL-352
700	chr3L	18833792	18833812	chr3L	18834956	18834976	1360	4	1164	0.0	2.5	1.2	1.8	1184	chr3L	18833792	intron	Indy -	chr3L	18834384	intron	Indy -	chr3L	18834976	intron	Indy -	chr3L_4_18830001	chr3L_18830001	RAL-352
704	chr3L	19008851	19008877	chr3L	19009189	19009197	jockey	9	335	2.5	5.5	4.0	1.8	346	chr3L	19008851	intron	nkd -	chr3L	19009024	intron	nkd -	chr3L	19009197	intron	nkd -	chr3L_9_19005001	chr3L_19005001	RAL-352
706	chr3L	19117044	19117076	chr3L	19124489	19124523	mdg1	12	7443	4.5	1.5	3.0	3.0	7479	chr3L	19117044	intron	CG14082 -	chr3L	19120784	intron	CG14082 -	chr3L	19124523	intron	CG14082 -	chr3L_12_19120001	chr3L_19120001	RAL-352
708	chr3L	19208063	19208089	chr3L	19209437	19209447	Doc	5	1369	2.0	3.0	2.5	1.4	1384	chr3L	19208063	intron	fz2 -	chr3L	19208755	intron	fz2 -	chr3L	19209447	intron	fz2 -	chr3L_5_19205001	chr3L_19205001	RAL-352
716	chr3L	20257340	20257361	chr3L	20258460	20258481	pogo	4	1118	0.5	3.0	1.8	1.4	1141	chr3L	20257340	intron	rdgC +	chr3L	20257910	intron	rdgC +	chr3L	20258481	intron	rdgC +	chr3L_4_20255001	chr3L_20255001	RAL-352
720	chr3L	20821272	20821310	chr3L	20824740	20824768	NOF	4	3466	3.0	3.0	3.0	1.0	3496	chr3L	20821272	intron	Pka-R1 +	chr3L	20823020	intron	Pka-R1 +	chr3L	20824768	intron	Pka-R1 +	chr3L_4_20820001	chr3L_20820001	RAL-352
731	chr3L	21243748	21243762	chr3L	21251311	21251318	412	6	7560	3.0	2.5	2.8	1.6	7570	chr3L	21243748	intron	Eip78C +	chr3L	21247533	intron	Eip78C +	chr3L	21251318	intron	Eip78C +	chr3L_6_21245001	chr3L_21245001	RAL-352
737	chr3L	21498833	21498870	chr3L	21500468	21500505	1360	10	1627	2.5	2.5	2.5	2.9	1672	chr3L	21498833	intron	Glg1 -	chr3L	21499669	intron	Glg1 -	chr3L	21500505	intron	Glg1 -	chr3L_10_21495001	chr3L_21495001	RAL-352
739	chr3L	21749316	21749352	chr3L	21754476	21754494	Doc	12	5151	2.5	4.5	3.5	2.7	5178	chr3L	21749316	intron	Syn1 -	chr3L	21751905	intron	Syn1 -	chr3L	21754494	intron	Syn1 -	chr3L_12_21750001	chr3L_21750001	RAL-352
746	chr3L	22099676	22099705	chr3L	22105862	22105890	3S18	4	6181	2.0	1.0	1.5	1.6	6214	chr3L	22099676	intergenic	not near genes	chr3L	22102783	intergenic	not near genes	chr3L	22105890	intergenic	not near genes	chr3L_4_22100001	chr3L_22100001	RAL-352
752	chr3L	22555772	22555801	chr3L	22563239	22563242	blood	4	7460	2.0	2.0	2.0	1.3	7470	chr3L	22555772	intergenic	not near genes	chr3L	22559507	intergenic	not near genes	chr3L	22563242	intergenic	not near genes	chr3L_4_22555001	chr3L_22555001	RAL-352
754	chr3L	22577627	22577648	chr3L	22582415	22582436	Doc	8	4786	1.5	12.0	6.8	1.0	4809	chr3L	22577627	intergenic	not near genes	chr3L	22580032	intergenic	not near genes	chr3L	22582436	3` UTR	CG14459 -	chr3L_8_22580001	chr3L_22580001	RAL-352
755	chr3L	22617188	22617222	chr3L	22624640	22624674	blood	8	7451	2.0	1.0	1.5	3.2	7486	chr3L	22617188	intron	CG14459 -	chr3L	22620931	intron	CG14459 -	chr3L	22624674	intron	CG14459 -	chr3L_8_22620001	chr3L_22620001	RAL-352
758	chr3L	22761403	22761414	chr3L	22766822	22766848	Ivk	4	5430	1.0	1.0	1.0	2.0	5445	chr3L	22761403	intron	SPoCk +	chr3L	22764126	intron	SPoCk +	chr3L	22766848	intron	SPoCk +	chr3L_4_22760001	chr3L_22760001	RAL-352
759	chr3L	22865982	22866008	chr3L	22867114	22867127	Doc	5	1130	3.5	2.0	2.8	1.3	1145	chr3L	22865982	intron	CG33170 +	chr3L	22866554	intron	CG33170 +	chr3L	22867127	intron	CG33170 +	chr3L_5_22865001	chr3L_22865001	RAL-352
762	chr3L	23042231	23042248	chr3L	23048984	23049001	gypsy6	6	6751	8.0	4.5	6.2	0.8	6770	chr3L	23042231	intergenic	not near genes	chr3L	23045616	intergenic	not near genes	chr3L	23049001	intergenic	not near genes	chr3L_6_23045001	chr3L_23045001	RAL-352
764	chr3L	24168782	24168784	chr3L	24176118	24176121	ZAM	5	7336	7.0	4.5	5.8	0.7	7339	chr3L	24168782	intron	Snap25 +	chr3L	24172452	intron	Snap25 +	chr3L	24176121	intron	Snap25 +	chr3L_5_24170001	chr3L_24170001	RAL-352
765	chr3L	24168787	24168802	chr3L	24176116	24176121	ZAM	4	7330	3.5	4.0	3.8	0.8	7334	chr3L	24168787	intron	Snap25 +	chr3L	24172454	intron	Snap25 +	chr3L	24176121	intron	Snap25 +	chr3L_4_24170001	chr3L_24170001	RAL-352
776	chr3R	4206072	4206104	chr3R	4211647	4211679	mdg3	6	5572	2.5	0.0	1.2	2.7	5607	chr3R	4206072	intron	CG14636 -	chr3R	4208876	intron	CG14636 -	chr3R	4211679	intron	CG14636 -	chr3R_6_4205001	chr3R_4205001	RAL-352
778	chr3R	4408423	4408435	chr3R	4412721	4412739	Juan	5	4302	2.5	2.0	2.2	1.6	4316	chr3R	4408423	intron	CG32944 -	chr3R	4410581	intron	CG32944 -	chr3R	4412739	intron	CG32944 -	chr3R_5_4410001	chr3R_4410001	RAL-352
780	chr3R	4609546	4609570	chr3R	4610710	4610734	1360	7	1162	6.0	2.0	4.0	1.4	1188	chr3R	4609546	intergenic	not near genes	chr3R	4610140	intergenic	not near genes	chr3R	4610734	intergenic	not near genes	chr3R_7_4610001	chr3R_4610001	RAL-352
781	chr3R	4683182	4683209	chr3R	4684941	4684967	S-element	9	1758	0.0	1.5	0.8	5.0	1785	chr3R	4683182	intron	CG43427 +	chr3R	4684074	intron	CG43427 +	chr3R	4684967	intron	CG43427 +	chr3R_9_4680001	chr3R_4680001	RAL-352
782	chr3R	4753239	4753277	chr3R	4757542	4757547	F-element	12	4299	4.0	3.0	3.5	2.7	4308	chr3R	4753239	intron,intron	atms +,CG44098 -	chr3R	4755393	intron,intron	atms +,CG44098 -	chr3R	4757547	intron,exon	atms +,CG44098 -	chr3R_12_4755001	chr3R_4755001	RAL-352
783	chr3R	4759717	4759747	chr3R	4761214	4761244	hopper2	10	1496	1.0	3.5	2.2	3.1	1527	chr3R	4759717	intron,intron	atms +,CG44098 -	chr3R	4760480	intron,intron	atms +,CG44098 -	chr3R	4761244	intron,intron	atms +,CG44098 -	chr3R_10_4760001	chr3R_4760001	RAL-352
788	chr3R	5067984	5068010	chr3R	5073501	5073526	mdg3	7	5514	1.0	2.5	1.8	2.5	5542	chr3R	5067984	intergenic	not near genes	chr3R	5070755	intergenic	not near genes	chr3R	5073526	intergenic	not near genes	chr3R_7_5070001	chr3R_5070001	RAL-352
791	chr3R	5338405	5338424	chr3R	5343569	5343601	Rt1c	10	5176	3.0	4.0	3.5	2.2	5196	chr3R	5338405	intron	mtd -	chr3R	5341003	intron	mtd -	chr3R	5343601	intron	mtd -	chr3R_10_5340001	chr3R_5340001	RAL-352
792	chr3R	5445961	5445988	chr3R	5452419	5452445	Burdock	4	6458	0.5	3.0	1.8	1.4	6484	chr3R	5445961	intron	CG14669 +	chr3R	5449203	intron	CG14669 +	chr3R	5452445	intron	CG14669 +	chr3R_4_5445001	chr3R_5445001	RAL-352
794	chr3R	5746017	5746042	chr3R	5746256	5746277	pogo	9	235	5.0	5.0	5.0	1.5	260	chr3R	5746017	3` UTR	Madm +	chr3R	5746147	3` UTR	Madm +	chr3R	5746277	3` UTR	Madm +	chr3R_9_5745001	chr3R_5745001	RAL-352
797	chr3R	5809121	5809141	chr3R	5809357	5809376	pogo	7	239	2.5	5.5	4.0	1.4	255	chr3R	5809121	3` UTR	CG11000 +	chr3R	5809248	3` UTR	CG11000 +	chr3R	5809376	3` UTR	CG11000 +	chr3R_7_5805001	chr3R_5805001	RAL-352
798	chr3R	5822383	5822404	chr3R	5823549	5823571	1360	6	1166	3.0	0.5	1.8	2.1	1188	chr3R	5822383	3` UTR	CG2023 -	chr3R	5822977	3` UTR	CG2023 -	chr3R	5823571	3` UTR	CG2023 -	chr3R_6_5820001	chr3R_5820001	RAL-352
800	chr3R	5927561	5927577	chr3R	5927800	5927817	pogo	6	239	3.5	0.5	2.0	2.0	256	chr3R	5927561	intron	CG34113 -	chr3R	5927689	intron	CG34113 -	chr3R	5927817	intron	CG34113 -	chr3R_6_5925001	chr3R_5925001	RAL-352
801	chr3R	5927579	5927588	chr3R	5927799	5927828	pogo	4	235	3.5	0.5	2.0	1.3	249	chr3R	5927579	intron	CG34113 -	chr3R	5927704	intron	CG34113 -	chr3R	5927828	intron	CG34113 -	chr3R_4_5925001	chr3R_5925001	RAL-352
802	chr3R	6015960	6015995	chr3R	6024441	6024476	Tirant	10	8474	0.5	2.0	1.2	4.5	8516	chr3R	6015960	intergenic	not near genes	chr3R	6020218	intergenic	not near genes	chr3R	6024476	intergenic	not near genes	chr3R_10_6020001	chr3R_6020001	RAL-352
804	chr3R	6175179	6175204	chr3R	6182451	6182466	HMS-Beagle2	4	7270	3.0	2.0	2.5	1.1	7287	chr3R	6175179	intergenic	Osi1 +	chr3R	6178822	intron	CR45194 +	chr3R	6182466	intergenic	CR45194 +	chr3R_4_6175001	chr3R_6175001	RAL-352
817	chr3R	7729468	7729495	chr3R	7737406	7737433	Stalker2	4	7938	1.5	3.0	2.2	1.2	7965	chr3R	7729468	intergenic	not near genes	chr3R	7733450	intergenic	not near genes	chr3R	7737433	intergenic	not near genes	chr3R_4_7730001	chr3R_7730001	RAL-352
819	chr3R	8101765	8101791	chr3R	8104848	8104875	G2	8	3081	4.5	1.5	3.0	2.0	3110	chr3R	8101765	exon	CG7900 +	chr3R	8103320	intron	CG7900 +	chr3R	8104875	3` UTR	CG7900 +	chr3R_8_8100001	chr3R_8100001	RAL-352
821	chr3R	8207558	8207577	chr3R	8208401	8208405	F-element	5	840	3.0	6.0	4.5	0.9	847	chr3R	8207558	intergenic	not near genes	chr3R	8207982	intergenic	not near genes	chr3R	8208405	intergenic	not near genes	chr3R_5_8205001	chr3R_8205001	RAL-352
825	chr3R	8403008	8403024	chr3R	8412174	8412190	roo	8	9164	11.0	5.0	8.0	0.9	9182	chr3R	8403008	intron	CG45263 -	chr3R	8407599	intron	CG45263 -	chr3R	8412190	intron	CG45263 -	chr3R_8_8405001	chr3R_8405001	RAL-352
826	chr3R	8403027	8403039	chr3R	8412172	8412192	roo	10	9160	4.5	4.5	4.5	1.8	9165	chr3R	8403027	intron	CG45263 -	chr3R	8407610	intron	CG45263 -	chr3R	8412192	intron	CG45263 -	chr3R_10_8405001	chr3R_8405001	RAL-352
830	chr3R	8570476	8570511	chr3R	8575112	8575146	HMS-Beagle	9	4628	3.0	2.5	2.8	2.4	4670	chr3R	8570476	intergenic	not near genes	chr3R	8572811	intergenic	not near genes	chr3R	8575146	intergenic	not near genes	chr3R_9_8570001	chr3R_8570001	RAL-352
832	chr3R	8601773	8601797	chr3R	8610926	8610927	roo	9	9148	3.0	4.0	3.5	2.0	9154	chr3R	8601773	intron	5-HT2B +	chr3R	8606350	intron	5-HT2B +	chr3R	8610927	intron	5-HT2B +	chr3R_9_8605001	chr3R_8605001	RAL-352
833	chr3R	8707357	8707381	chr3R	8709798	8709822	jockey	8	2440	3.5	5.0	4.2	1.5	2465	chr3R	8707357	intergenic	not near genes	chr3R	8708590	intergenic	not near genes	chr3R	8709822	intergenic	not near genes	chr3R_8_8705001	chr3R_8705001	RAL-352
839	chr3R	9278789	9278811	chr3R	9284038	9284043	Rt1a	10	5251	4.0	7.5	5.8	1.5	5254	chr3R	9278789	intergenic	not near genes	chr3R	9281416	intergenic	not near genes	chr3R	9284043	intergenic	not near genes	chr3R_10_9280001	chr3R_9280001	RAL-352
840	chr3R	9304529	9304557	chr3R	9311815	9311821	Stalker4	6	7282	3.0	1.0	2.0	2.0	7292	chr3R	9304529	intron	CG8861 -	chr3R	9308175	intron	CG8861 -	chr3R	9311821	intron	CG8861 -	chr3R_6_9305001	chr3R_9305001	RAL-352
841	chr3R	9319579	9319608	chr3R	9320006	9320018	jockey	11	428	3.5	1.0	2.2	3.4	439	chr3R	9319579	intron	CG8861 -	chr3R	9319798	intron	CG8861 -	chr3R	9320018	intron	CG8861 -	chr3R_11_9315001	chr3R_9315001	RAL-352
845	chr3R	9699978	9700001	chr3R	9700067	9700078	1360	5	86	5.0	5.0	5.0	0.8	100	chr3R	9699978	intron	Unc-115a -	chr3R	9700028	intron	Unc-115a -	chr3R	9700078	intron	Unc-115a -	chr3R_5_9700001	chr3R_9700001	RAL-352
874	chr3R	11379236	11379261	chr3R	11388391	11388397	roo	6	9151	1.5	2.0	1.8	2.1	9161	chr3R	11379236	intron	pros +	chr3R	11383816	intron	pros +	chr3R	11388397	intron	pros +	chr3R_6_11380001	chr3R_11380001	RAL-352
877	chr3R	11841062	11841097	chr3R	11846253	11846288	BS	9	5190	4.0	4.0	4.0	1.8	5226	chr3R	11841062	intron	CG6959 -	chr3R	11843675	intron	CG6959 -	chr3R	11846288	intron	CG6959 -	chr3R_9_11840001	chr3R_11840001	RAL-352
881	chr3R	12022895	12022909	chr3R	12025062	12025083	pogo	6	2173	2.5	1.5	2.0	2.0	2188	chr3R	12022895	intergenic	not near genes	chr3R	12023989	intergenic	not near genes	chr3R	12025083	intergenic	not near genes	chr3R_6_12020001	chr3R_12020001	RAL-352
888	chr3R	12920160	12920184	chr3R	12925361	12925386	copia	5	5199	3.5	2.0	2.8	1.3	5226	chr3R	12920160	intron	beat-Vb +	chr3R	12922773	intron	beat-Vb +	chr3R	12925386	intron	beat-Vb +	chr3R_5_12920001	chr3R_12920001	RAL-352
891	chr3R	13135826	13135854	chr3R	13138001	13138028	pogo	4	2174	1.5	1.0	1.2	1.8	2202	chr3R	13135826	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13136927	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13138028	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R_4_13135001	chr3R_13135001	RAL-352
892	chr3R	13143045	13143058	chr3R	13148622	13148629	mdg3	5	5574	3.5	7.0	5.2	0.8	5584	chr3R	13143045	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13145837	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13148629	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R_5_13145001	chr3R_13145001	RAL-352
893	chr3R	13143059	13143066	chr3R	13148618	13148640	mdg3	7	5572	1.5	4.5	3.0	1.8	5581	chr3R	13143059	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13145850	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13148640	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R_7_13145001	chr3R_13145001	RAL-352
920	chr3R	15041438	15041454	chr3R	15045193	15045221	Doc	5	3764	0.5	3.0	1.8	1.8	3783	chr3R	15041438	intergenic	not near genes	chr3R	15043330	intergenic	not near genes	chr3R	15045221	intergenic	not near genes	chr3R_5_15040001	chr3R_15040001	RAL-352
922	chr3R	15079812	15079835	chr3R	15080053	15080076	pogo	4	241	2.0	1.0	1.5	1.6	264	chr3R	15079812	3` UTR	CG6966 -	chr3R	15079944	3` UTR	CG6966 -	chr3R	15080076	3` UTR	CG6966 -	chr3R_4_15075001	chr3R_15075001	RAL-352
923	chr3R	15162548	15162564	chr3R	15167315	15167331	F-element	5	4767	5.0	2.5	3.8	1.0	4783	chr3R	15162548	intron	Gyc88E +	chr3R	15164940	intron	Gyc88E +	chr3R	15167331	intron	Gyc88E +	chr3R_5_15160001	chr3R_15160001	RAL-352
925	chr3R	15601167	15601195	chr3R	15608689	15608716	412	11	7521	3.0	3.0	3.0	2.8	7549	chr3R	15601167	intergenic	not near genes	chr3R	15604942	intergenic	not near genes	chr3R	15608716	intergenic	not near genes	chr3R_11_15600001	chr3R_15600001	RAL-352
926	chr3R	15618743	15618761	chr3R	15626212	15626233	blood	6	7470	1.0	4.0	2.5	1.7	7490	chr3R	15618743	intergenic	not near genes	chr3R	15622488	intergenic	not near genes	chr3R	15626233	intergenic	not near genes	chr3R_6_15620001	chr3R_15620001	RAL-352
939	chr3R	16756336	16756353	chr3R	16762513	16762541	diver	6	6187	1.5	2.5	2.0	2.0	6205	chr3R	16756336	intron	bxd -	chr3R	16759438	intron	bxd -	chr3R	16762541	intron	bxd -	chr3R_6_16755001	chr3R_16755001	RAL-352
944	chr3R	17346704	17346716	chr3R	17348266	17348271	F-element	4	1561	0.5	6.0	3.2	1.0	1567	chr3R	17346704	intron	beat-IIa -	chr3R	17347488	intron	beat-IIa -	chr3R	17348271	intron	beat-IIa -	chr3R_4_17345001	chr3R_17345001	RAL-352
950	chr3R	17925851	17925889	chr3R	17927318	17927356	hobo	15	1465	4.0	7.5	5.8	2.2	1505	chr3R	17925851	intron	cpo +	chr3R	17926604	intron	cpo +	chr3R	17927356	intron	cpo +	chr3R_15_17925001	chr3R_17925001	RAL-352
952	chr3R	18032796	18032807	chr3R	18040466	18040477	opus	5	7670	0.0	0.0	0.0	5.0	7681	chr3R	18032796	intergenic	not near genes	chr3R	18036636	intergenic	not near genes	chr3R	18040477	intergenic	not near genes	chr3R_5_18035001	chr3R_18035001	RAL-352
966	chr3R	19136408	19136410	chr3R	19139794	19139871	Bari1	4	3405	45.0	7.0	26.0	0.1	3463	chr3R	19136408	exon	Cyp12a4 +	chr3R	19138140	intergenic	not near genes	chr3R	19139871	3` UTR	Ppcs -	chr3R_4_19135001	chr3R_19135001	RAL-352
979	chr3R	20109555	20109560	chr3R	20114760	20114766	copia	4	5206	0.5	1.5	1.0	2.0	5211	chr3R	20109555	intergenic	not near genes	chr3R	20112160	intergenic	not near genes	chr3R	20114766	intergenic	CG10887 +	chr3R_4_20110001	chr3R_20110001	RAL-352
983	chr3R	20156708	20156718	chr3R	20165858	20165888	roo	6	9166	4.0	2.5	3.2	1.4	9180	chr3R	20156708	intergenic	not near genes	chr3R	20161298	intergenic	not near genes	chr3R	20165888	intergenic	not near genes	chr3R_6_20160001	chr3R_20160001	RAL-352
985	chr3R	20266518	20266548	chr3R	20272989	20273014	Burdock	5	6470	2.5	4.0	3.2	1.2	6496	chr3R	20266518	intron	cic +	chr3R	20269766	intron	cic +	chr3R	20273014	intron	cic +	chr3R_5_20265001	chr3R_20265001	RAL-352
986	chr3R	20331004	20331016	chr3R	20331489	20331502	roo	4	486	1.0	0.0	0.5	2.7	498	chr3R	20331004	intergenic	Sirt2 +	chr3R	20331253	intergenic	Sirt2 +	chr3R	20331502	intergenic	not near genes	chr3R_4_20330001	chr3R_20330001	RAL-352
994	chr3R	20854494	20854517	chr3R	20859284	20859307	Doc	5	4786	8.5	2.5	5.5	0.8	4813	chr3R	20854494	intron	Ir93a -	chr3R	20856900	intron	Ir93a -	chr3R	20859307	exon	Ir93a -	chr3R_5_20855001	chr3R_20855001	RAL-352
996	chr3R	21141684	21141705	chr3R	21150159	21150184	Tirant	9	8475	3.0	2.5	2.8	2.4	8500	chr3R	21141684	intron	SNF4Agamma +	chr3R	21145934	intron	SNF4Agamma +	chr3R	21150184	intron	SNF4Agamma +	chr3R_9_21145001	chr3R_21145001	RAL-352
1005	chr3R	21761135	21761138	chr3R	21768513	21768530	mdg1	4	7384	6.0	5.0	5.5	0.6	7395	chr3R	21761135	exon	CG42335 +	chr3R	21764832	intron	CG42335 +	chr3R	21768530	exon	CG42335 +	chr3R_4_21760001	chr3R_21760001	RAL-352
1006	chr3R	21761140	21761153	chr3R	21768510	21768537	mdg1	9	7381	3.0	4.5	3.8	1.9	7397	chr3R	21761140	exon	CG42335 +	chr3R	21764838	intron	CG42335 +	chr3R	21768537	exon	CG42335 +	chr3R_9_21760001	chr3R_21760001	RAL-352
1016	chr3R	22234691	22234713	chr3R	22236006	22236032	pogo	4	1318	1.5	1.0	1.2	1.8	1341	chr3R	22234691	intron	SKIP +	chr3R	22235362	intron	SKIP +	chr3R	22236032	intron	SKIP +	chr3R_4_22235001	chr3R_22235001	RAL-352
1019	chr3R	22450543	22450573	chr3R	22453183	22453210	NOF	12	2632	3.0	4.5	3.8	2.5	2667	chr3R	22450543	intron	CG34376 +	chr3R	22451876	intron	CG34376 +	chr3R	22453210	intron	CG34376 +	chr3R_12_22450001	chr3R_22450001	RAL-352
1038	chr3R	23558403	23558423	chr3R	23560180	23560204	Bari1	6	1780	2.0	2.5	2.2	1.9	1801	chr3R	23558403	intron	beat-IV +	chr3R	23559304	intron	beat-IV +	chr3R	23560204	intron	beat-IV +	chr3R_6_23555001	chr3R_23555001	RAL-352
1044	chr3R	23684706	23684727	chr3R	23685185	23685213	roo	4	480	4.0	9.5	6.8	0.5	507	chr3R	23684706	intron	CG18754 +	chr3R	23684960	intron	CG18754 +	chr3R	23685213	exon	CG18754 +	chr3R_4_23680001	chr3R_23680001	RAL-352
1048	chr3R	23835422	23835435	chr3R	23844567	23844585	roo	5	9147	0.5	3.5	2.0	1.7	9163	chr3R	23835422	intron	CG34355 +	chr3R	23840004	intron	CG34355 +	chr3R	23844585	intron	CG34355 +	chr3R_5_23840001	chr3R_23840001	RAL-352
1051	chr3R	24072088	24072120	chr3R	24072525	24072532	jockey	7	431	2.5	7.5	5.0	1.2	444	chr3R	24072088	intron	4EHP -	chr3R	24072310	intron	4EHP -	chr3R	24072532	intron	4EHP -	chr3R_7_24070001	chr3R_24070001	RAL-352
1052	chr3R	24207225	24207247	chr3R	24212288	24212323	flea	9	5071	5.5	7.0	6.2	1.2	5098	chr3R	24207225	intron	twin -	chr3R	24209774	intron	twin -	chr3R	24212323	intron	twin -	chr3R_9_24205001	chr3R_24205001	RAL-352
1055	chr3R	24493281	24493304	chr3R	24493510	24493533	BS	6	227	2.0	3.0	2.5	1.7	252	chr3R	24493281	intergenic	not near genes	chr3R	24493407	intergenic	not near genes	chr3R	24493533	intergenic	not near genes	chr3R_6_24490001	chr3R_24490001	RAL-352
1057	chr3R	24730108	24730118	chr3R	24732469	24732496	Doc	5	2372	2.5	0.0	1.2	2.3	2388	chr3R	24730108	intron	tok +	chr3R	24731302	intron	tok +	chr3R	24732496	intron	tok +	chr3R_5_24730001	chr3R_24730001	RAL-352
1058	chr3R	24927125	24927163	chr3R	24931916	24931954	Doc	7	4788	2.0	1.5	1.8	2.5	4829	chr3R	24927125	intergenic	Trf4-2 +	chr3R	24929540	intergenic	not near genes	chr3R	24931954	intergenic	CG11771 +	chr3R_7_24925001	chr3R_24925001	RAL-352
1072	chr3R	25832699	25832719	chr3R	25841879	25841880	roo	8	9176	4.5	6.5	5.5	1.2	9181	chr3R	25832699	exon	alpha4GT2 +	chr3R	25837290	intron	alpha4GT2 +	chr3R	25841880	exon	alpha4GT2 +	chr3R_8_25835001	chr3R_25835001	RAL-352
1079	chr3R	26376322	26376354	chr3R	26385482	26385499	roo	8	9156	1.0	0.5	0.8	4.4	9177	chr3R	26376322	intergenic	not near genes	chr3R	26380910	intergenic	not near genes	chr3R	26385499	intergenic	not near genes	chr3R_8_26380001	chr3R_26380001	RAL-352
1082	chr3R	26510523	26510534	chr3R	26519577	26519588	roo	4	9054	2.0	2.5	2.2	1.2	9065	chr3R	26510523	intron	plum -	chr3R	26515056	intron	plum -	chr3R	26519588	intron,5` UTR	plum -,CR45226 +	chr3R_4_26515001	chr3R_26515001	RAL-352
1084	chr3R	26558336	26558361	chr3R	26565640	26565668	Stalker4	8	7307	5.0	2.5	3.8	1.7	7332	chr3R	26558336	intron	scrib +	chr3R	26562002	intron	scrib +	chr3R	26565668	intron	scrib +	chr3R_8_26560001	chr3R_26560001	RAL-352
1087	chr3R	26642744	26642761	chr3R	26643121	26643147	jockey	4	387	1.0	3.0	2.0	1.3	403	chr3R	26642744	intergenic	not near genes	chr3R	26642946	intergenic	not near genes	chr3R	26643147	intergenic	not near genes	chr3R_4_26640001	chr3R_26640001	RAL-352
1092	chr3R	26810554	26810586	chr3R	26811039	26811071	roo	7	485	2.0	5.5	3.8	1.5	517	chr3R	26810554	intron	Tl +	chr3R	26810812	intron	Tl +	chr3R	26811071	intron	Tl +	chr3R_7_26810001	chr3R_26810001	RAL-352
1095	chr3R	27140516	27140548	chr3R	27148123	27148152	412	9	7606	9.0	5.0	7.0	1.1	7636	chr3R	27140516	intron	CG6051 -	chr3R	27144334	intron	CG6051 -	chr3R	27148152	intron	CG6051 -	chr3R_9_27140001	chr3R_27140001	RAL-352
1103	chr3R	27725567	27725597	chr3R	27731009	27731038	I-element	8	5438	3.5	1.5	2.5	2.3	5471	chr3R	27725567	intergenic	not near genes	chr3R	27728302	intergenic	not near genes	chr3R	27731038	intergenic	not near genes	chr3R_8_27725001	chr3R_27725001	RAL-352
1105	chr3R	27862956	27862987	chr3R	27868260	27868292	Transpac	5	5302	1.0	1.5	1.2	2.3	5336	chr3R	27862956	intron	CG34353 -	chr3R	27865624	intron	CG34353 -	chr3R	27868292	intron	CG34353 -	chr3R_5_27865001	chr3R_27865001	RAL-352
1106	chr3R	27875702	27875732	chr3R	27882757	27882779	297	11	7053	4.0	3.0	3.5	2.4	7077	chr3R	27875702	intron	CG34353 -	chr3R	27879240	intron	CG34353 -	chr3R	27882779	intron	CG34353 -	chr3R_11_27875001	chr3R_27875001	RAL-352
1108	chr3R	28068505	28068532	chr3R	28073947	28073962	I-element	4	5439	2.5	3.0	2.8	1.1	5457	chr3R	28068505	intron	CG34362 +	chr3R	28071234	intron	CG34362 +	chr3R	28073962	intron	CG34362 +	chr3R_4_28070001	chr3R_28070001	RAL-352
1118	chr3R	28302110	28302133	chr3R	28302540	28302564	jockey	4	434	0.5	0.5	0.5	2.7	454	chr3R	28302110	intergenic	not near genes	chr3R	28302337	intergenic	not near genes	chr3R	28302564	intergenic	not near genes	chr3R_4_28300001	chr3R_28300001	RAL-352
1123	chr3R	28792870	28792903	chr3R	28797962	28797995	jockey	12	5092	1.5	2.0	1.8	4.3	5125	chr3R	28792870	intergenic	not near genes	chr3R	28795432	intergenic	not near genes	chr3R	28797995	intergenic	not near genes	chr3R_12_28795001	chr3R_28795001	RAL-352
1129	chr3R	29079387	29079402	chr3R	29080759	29080774	NOF	5	1372	2.0	7.0	4.5	0.9	1387	chr3R	29079387	intron	CG11873 +	chr3R	29080080	intron	CG11873 +	chr3R	29080774	intron	CG11873 +	chr3R_5_29080001	chr3R_29080001	RAL-352
1136	chr3R	29406617	29406650	chr3R	29407903	29407921	jockey	10	1277	4.5	3.0	3.8	2.1	1304	chr3R	29406617	intron	Ptp99A +	chr3R	29407269	intron	Ptp99A +	chr3R	29407921	intron	Ptp99A +	chr3R_10_29405001	chr3R_29405001	RAL-352
1144	chr3R	29738263	29738298	chr3R	29739730	29739763	hobo	11	1465	1.0	3.5	2.2	3.4	1500	chr3R	29738263	intergenic	CG1969 +,CG7598 +	chr3R	29739013	intron	CG1969 +	chr3R	29739763	5` UTR	CG1969 +	chr3R_11_29735001	chr3R_29735001	RAL-352
1153	chr3R	30084854	30084880	chr3R	30086321	30086347	hobo	9	1465	0.5	4.0	2.2	2.8	1493	chr3R	30084854	intron	sima +	chr3R	30085600	intron	sima +	chr3R	30086347	intron	sima +	chr3R_9_30085001	chr3R_30085001	RAL-352
1157	chr3R	30317326	30317350	chr3R	30324916	30324937	roo	6	7591	3.0	2.5	2.8	1.6	7611	chr3R	30317326	intron	hdc +	chr3R	30321132	intron	hdc +	chr3R	30324937	intron	hdc +	chr3R_6_30320001	chr3R_30320001	RAL-352
1160	chr3R	30396222	30396241	chr3R	30404488	30404506	roo	4	8266	2.0	2.5	2.2	1.2	8284	chr3R	30396222	intergenic	not near genes	chr3R	30400364	intergenic	not near genes	chr3R	30404506	5` UTR	CR45570 +	chr3R_4_30400001	chr3R_30400001	RAL-352
1165	chr3R	30480475	30480479	chr3R	30482943	30482944	jockey	4	2467	12.5	2.5	7.5	0.5	2469	chr3R	30480475	intron	PH4alphaEFB +	chr3R	30481710	intron	PH4alphaEFB +	chr3R	30482944	intron	PH4alphaEFB +	chr3R_4_30480001	chr3R_30480001	RAL-352
1166	chr3R	30480486	30480513	chr3R	30482940	30482981	jockey	13	2466	3.5	2.5	3.0	3.2	2495	chr3R	30480486	intron	PH4alphaEFB +	chr3R	30481734	intron	PH4alphaEFB +	chr3R	30482981	intron	PH4alphaEFB +	chr3R_13_30480001	chr3R_30480001	RAL-352
1179	chr3R	31279377	31279406	chr3R	31285567	31285588	diver	6	6188	3.0	4.5	3.8	1.2	6211	chr3R	31279377	intergenic	not near genes	chr3R	31282482	intergenic	not near genes	chr3R	31285588	intergenic	not near genes	chr3R_6_31280001	chr3R_31280001	RAL-352
1181	chr3R	31413095	31413122	chr3R	31418291	31418322	copia	13	5198	2.0	1.0	1.5	5.2	5227	chr3R	31413095	intron	Gprk2 +	chr3R	31415708	intron	Gprk2 +	chr3R	31418322	intron	Gprk2 +	chr3R_13_31415001	chr3R_31415001	RAL-352
1186	chr3R	31691531	31691561	chr3R	31696297	31696311	Doc	12	4762	4.0	7.5	5.8	1.8	4780	chr3R	31691531	intergenic	not near genes	chr3R	31693921	intergenic	not near genes	chr3R	31696311	intergenic	not near genes	chr3R_12_31690001	chr3R_31690001	RAL-352
1190	chr3R	31997994	31998023	chr3R	32005463	32005493	blood	6	7469	4.0	1.0	2.5	1.7	7499	chr3R	31997994	intron	heph -	chr3R	32001744	intron	heph -	chr3R	32005493	intron	heph -	chr3R_6_32000001	chr3R_32000001	RAL-352
1192	chr4	671603	671634	chr4	680186	680204	Tirant	11	8579	3.5	7.0	5.2	1.8	8601	chr4	671603	intron	CG11360 +	chr4	675904	intron	CG11360 +	chr4	680204	intron	CG11360 +	chr4_11_675001	chr4_675001	RAL-352
1204	chrX	827609	827630	chrX	835392	835422	roo	7	7791	3.0	3.0	3.0	1.8	7813	chrX	827609	intron	CG43867 -	chrX	831516	intron	CG43867 -	chrX	835422	intron	CG43867 -	chrX_7_830001	chrX_830001	RAL-352
1211	chrX	1518060	1518074	chrX	1523437	1523476	jockey	6	5392	2.5	2.5	2.5	1.7	5416	chrX	1518060	intergenic	inc +	chrX	1520768	intergenic	not near genes	chrX	1523476	intergenic	not near genes	chrX_6_1520001	chrX_1520001	RAL-352
1212	chrX	1627984	1628004	chrX	1635449	1635468	gtwin	8	7465	3.0	5.0	4.0	1.6	7484	chrX	1627984	intron,intron	Mur2B -,br +	chrX	1631726	intron,intron	Mur2B -,br +	chrX	1635468	intron,intron	Mur2B -,br +	chrX_8_1630001	chrX_1630001	RAL-352
1213	chrX	1954887	1954906	chrX	1962824	1962836	Stalker2	4	7935	1.0	2.5	1.8	1.4	7949	chrX	1954887	intron	Hr4 +	chrX	1958862	intron	Hr4 +	chrX	1962836	intron	Hr4 +	chrX_4_1955001	chrX_1955001	RAL-352
1215	chrX	2399837	2399865	chrX	2408190	2408204	roo	4	8348	6.0	0.0	3.0	1.0	8367	chrX	2399837	intergenic	not near genes	chrX	2404020	intergenic	not near genes	chrX	2408204	intergenic	not near genes	chrX_4_2400001	chrX_2400001	RAL-352
1222	chrX	3415029	3415046	chrX	3421210	3421220	3S18	8	6181	0.0	1.0	0.5	5.3	6191	chrX	3415029	intron,intron	CR44999 +,CG12535 -	chrX	3418124	intron,intron	CR44999 +,CG12535 -	chrX	3421220	intron,intron	CR44999 +,CG12535 -	chrX_8_3415001	chrX_3415001	RAL-352
1223	chrX	3493092	3493123	chrX	3502250	3502263	roo	6	9152	3.0	1.5	2.2	1.9	9171	chrX	3493092	intron,intron	CR44999 +,Gas8 -	chrX	3497678	intron,intron	CR44999 +,Gas8 -	chrX	3502263	intron,intron	CR44999 +,Gas8 -	chrX_6_3495001	chrX_3495001	RAL-352
1224	chrX	3597559	3597575	chrX	3619727	3619743	roo	5	22167	3.0	5.5	4.2	1.0	22184	chrX	3597559	intron	AstA-R1 +	chrX	3608651	intron	AstA-R1 +	chrX	3619743	intron	AstA-R1 +	chrX_5_3605001	chrX_3605001	RAL-352
1230	chrX	3986862	3986894	chrX	3994494	3994527	412	4	7632	2.5	2.0	2.2	1.2	7665	chrX	3986862	intergenic	not near genes	chrX	3990694	intergenic	not near genes	chrX	3994527	intergenic	not near genes	chrX_4_3990001	chrX_3990001	RAL-352
1231	chrX	4157890	4157923	chrX	4164925	4164953	297	8	7033	0.5	1.5	1.0	4.0	7063	chrX	4157890	intron	Fas2 -	chrX	4161422	intron	Fas2 -	chrX	4164953	intron	Fas2 -	chrX_8_4160001	chrX_4160001	RAL-352
1238	chrX	4731817	4731842	chrX	4736907	4736918	jockey	5	5088	6.0	3.5	4.8	0.9	5101	chrX	4731817	intergenic	not near genes	chrX	4734368	intergenic	not near genes	chrX	4736918	intergenic	not near genes	chrX_5_4730001	chrX_4730001	RAL-352
1241	chrX	4763258	4763284	chrX	4763742	4763772	Stalker4	6	482	2.0	1.5	1.8	2.1	514	chrX	4763258	intergenic	not near genes	chrX	4763515	intergenic	not near genes	chrX	4763772	intergenic	not near genes	chrX_6_4760001	chrX_4760001	RAL-352
1242	chrX	4792384	4792407	chrX	4792817	4792840	jockey	5	433	2.0	8.0	5.0	0.8	456	chrX	4792384	intergenic	not near genes	chrX	4792612	intergenic	not near genes	chrX	4792840	intergenic	not near genes	chrX_5_4790001	chrX_4790001	RAL-352
1246	chrX	5338708	5338738	chrX	5339958	5339970	jockey	5	1247	0.5	3.0	1.8	1.8	1262	chrX	5338708	intergenic	not near genes	chrX	5339339	intergenic	not near genes	chrX	5339970	intergenic	SK +	chrX_5_5335001	chrX_5335001	RAL-352
1248	chrX	5884171	5884185	chrX	5884412	5884417	pogo	4	238	1.5	1.5	1.5	1.6	246	chrX	5884171	intron	CR45668 -	chrX	5884294	intron	CR45668 -	chrX	5884417	intron	CR45668 -	chrX_4_5880001	chrX_5880001	RAL-352
1249	chrX	6171585	6171610	chrX	6179018	6179043	Quasimodo	4	7432	3.0	1.0	2.0	1.3	7458	chrX	6171585	intron	Ca-alpha1T -	chrX	6175314	intron	Ca-alpha1T -	chrX	6179043	intron	Ca-alpha1T -	chrX_4_6175001	chrX_6175001	RAL-352
1252	chrX	6335221	6335231	chrX	6337731	6337741	Tirant	4	2510	0.0	4.0	2.0	1.3	2520	chrX	6335221	intergenic	not near genes	chrX	6336481	intergenic	not near genes	chrX	6337741	intergenic	CG3842 +	chrX_4_6335001	chrX_6335001	RAL-352
1253	chrX	6392885	6392900	chrX	6397643	6397665	Doc	7	4763	3.0	2.0	2.5	2.0	4780	chrX	6392885	intergenic	not near genes	chrX	6395275	intergenic	not near genes	chrX	6397665	intergenic	not near genes	chrX_7_6395001	chrX_6395001	RAL-352
1254	chrX	6562830	6562845	chrX	6571306	6571324	Tirant	6	8478	3.0	3.5	3.2	1.4	8494	chrX	6562830	intron	CG34417 +	chrX	6567077	intron	CG34417 +	chrX	6571324	intron	CG34417 +	chrX_6_6565001	chrX_6565001	RAL-352
1257	chrX	7023607	7023633	chrX	7030997	7031018	Tabor	5	7388	1.5	4.0	2.8	1.3	7411	chrX	7023607	intron	CG12541 -	chrX	7027312	intron	CG12541 -	chrX	7031018	intron	CG12541 -	chrX_5_7025001	chrX_7025001	RAL-352
1258	chrX	7125247	7125278	chrX	7134406	7134437	roo	5	9159	0.5	3.0	1.8	1.8	9190	chrX	7125247	intergenic	not near genes	chrX	7129842	intergenic	not near genes	chrX	7134437	intergenic	not near genes	chrX_5_7125001	chrX_7125001	RAL-352
1261	chrX	7702904	7702929	chrX	7703343	7703364	jockey	4	438	3.0	3.0	3.0	1.0	460	chrX	7702904	intron	CHES-1-like -	chrX	7703134	intron	CHES-1-like -	chrX	7703364	intron	CHES-1-like -	chrX_4_7700001	chrX_7700001	RAL-352
1262	chrX	7784236	7784259	chrX	7784537	7784544	jockey	4	298	7.5	5.0	6.2	0.6	308	chrX	7784236	intergenic	not near genes	chrX	7784390	intergenic	not near genes	chrX	7784544	intergenic	not near genes	chrX_4_7780001	chrX_7780001	RAL-352
1263	chrX	7845734	7845752	chrX	7847224	7847243	hopper2	4	1491	4.0	1.5	2.8	1.1	1509	chrX	7845734	intergenic	not near genes	chrX	7846488	intergenic	not near genes	chrX	7847243	intergenic	not near genes	chrX_4_7845001	chrX_7845001	RAL-352
1271	chrX	8922340	8922363	chrX	8922759	8922797	jockey	6	431	6.5	4.5	5.5	0.9	457	chrX	8922340	intron	rdgA +	chrX	8922568	intron	rdgA +	chrX	8922797	intron	rdgA +	chrX_6_8920001	chrX_8920001	RAL-352
1275	chrX	9508137	9508170	chrX	9509653	9509684	jockey	6	1517	1.5	5.0	3.2	1.4	1547	chrX	9508137	intron	CG32700 -	chrX	9508910	intron	CG32700 -	chrX	9509684	intron	CG32700 -	chrX_6_9505001	chrX_9505001	RAL-352
1276	chrX	9575789	9575815	chrX	9576113	9576138	mdg3	8	322	4.5	2.0	3.2	1.9	349	chrX	9575789	intron,exon	CG32699 -,CG42395 -	chrX	9575964	intron,intron	CG32699 -,CG42395 -	chrX	9576138	intron,5` UTR	CG32699 -,CG42395 -	chrX_8_9575001	chrX_9575001	RAL-352
1282	chrX	10550878	10550888	chrX	10552326	10552340	hobo	5	1459	2.0	2.5	2.2	1.6	1462	chrX	10550878	intron	spri -	chrX	10551609	intron	spri -	chrX	10552340	intron	spri -	chrX_5_10550001	chrX_10550001	RAL-352
1283	chrX	10686069	10686082	chrX	10691206	10691219	roo	5	5135	1.0	3.5	2.2	1.6	5150	chrX	10686069	intron	X11Lbeta +	chrX	10688644	intron	X11Lbeta +	chrX	10691219	intron	X11Lbeta +	chrX_5_10685001	chrX_10685001	RAL-352
1284	chrX	10772683	10772696	chrX	10772766	10772778	Tirant	4	79	1.5	0.5	1.0	2.0	95	chrX	10772683	intron	CG15211 +	chrX	10772730	intron	CG15211 +	chrX	10772778	intron	CG15211 +	chrX_4_10770001	chrX_10770001	RAL-352
1287	chrX	11312081	11312084	chrX	11319419	11319422	Stalker2	4	7342	1.5	1.5	1.5	1.6	7341	chrX	11312081	intergenic	not near genes	chrX	11315752	intergenic	not near genes	chrX	11319422	intergenic	not near genes	chrX_4_11315001	chrX_11315001	RAL-352
1288	chrX	11633417	11633448	chrX	11640471	11640501	297	6	7051	1.5	1.0	1.2	2.7	7084	chrX	11633417	intron	Ptp10D +	chrX	11636959	intron	Ptp10D +	chrX	11640501	intron	Ptp10D +	chrX_6_11635001	chrX_11635001	RAL-352
1294	chrX	12168148	12168157	chrX	12173590	12173599	I-element	4	5442	1.0	1.5	1.2	1.8	5451	chrX	12168148	intron	Ten-a +	chrX	12170874	intron	Ten-a +	chrX	12173599	intron	Ten-a +	chrX_4_12170001	chrX_12170001	RAL-352
1302	chrX	13429467	13429494	chrX	13430616	13430643	jockey	4	1149	0.5	3.5	2.0	1.3	1176	chrX	13429467	intergenic	not near genes	chrX	13430055	intergenic	not near genes	chrX	13430643	intergenic	not near genes	chrX_4_13430001	chrX_13430001	RAL-352
1305	chrX	14105029	14105054	chrX	14114171	14114205	roo	9	9145	3.0	2.0	2.5	2.6	9176	chrX	14105029	intergenic	not near genes	chrX	14109617	intergenic	not near genes	chrX	14114205	5` UTR	CR44657 +	chrX_9_14105001	chrX_14105001	RAL-352
1309	chrX	14636456	14636480	chrX	14641897	14641912	I-element	7	5439	6.0	1.5	3.8	1.5	5456	chrX	14636456	intron	NetA -	chrX	14639184	intron	NetA -	chrX	14641912	intron	NetA -	chrX_7_14635001	chrX_14635001	RAL-352
1310	chrX	15413058	15413064	chrX	15417360	15417366	Juan	4	4302	7.0	1.0	4.0	0.8	4308	chrX	15413058	intron	Cngl -	chrX	15415212	intron	Cngl -	chrX	15417366	intron	Cngl -	chrX_4_15415001	chrX_15415001	RAL-352
1311	chrX	15435687	15435699	chrX	15436116	15436129	rover	6	431	0.0	3.0	1.5	2.4	442	chrX	15435687	intron	Cngl -	chrX	15435908	intron	Cngl -	chrX	15436129	intron	Cngl -	chrX_6_15435001	chrX_15435001	RAL-352
1326	chrX	18194076	18194101	chrX	18194606	18194635	BS	9	531	1.0	2.5	1.8	3.2	559	chrX	18194076	intron	Frq2 +	chrX	18194356	intron	Frq2 +	chrX	18194635	intron	Frq2 +	chrX_9_18190001	chrX_18190001	RAL-352
1334	chrX	19060413	19060437	chrX	19065189	19065221	Doc	4	4778	1.5	3.0	2.2	1.2	4808	chrX	19060413	intron	CG14190 +	chrX	19062817	intron	CG14190 +	chrX	19065221	intron	CG14190 +	chrX_4_19060001	chrX_19060001	RAL-352
1339	chrX	19472129	19472156	chrX	19472698	19472726	jockey	4	568	3.0	2.5	2.8	1.1	597	chrX	19472129	intergenic	kek5 +	chrX	19472428	intergenic	not near genes	chrX	19472726	intergenic	not near genes	chrX_4_19470001	chrX_19470001	RAL-352
1342	chrX	19710073	19710096	chrX	19711859	19711882	S-element	10	1785	1.0	2.5	1.8	3.6	1809	chrX	19710073	intron	meso18E -	chrX	19710978	intron	meso18E -	chrX	19711882	intron	meso18E -	chrX_10_19710001	chrX_19710001	RAL-352
1348	chrX	20377325	20377349	chrX	20378788	20378816	hobo	10	1462	5.0	5.5	5.2	1.6	1491	chrX	20377325	intergenic	not near genes	chrX	20378070	intergenic	not near genes	chrX	20378816	intergenic	not near genes	chrX_10_20375001	chrX_20375001	RAL-352
1349	chrX	20836743	20836751	chrX	20844343	20844352	roo	4	7601	1.0	2.0	1.5	1.6	7609	chrX	20836743	intron	shakB -	chrX	20840548	intron	shakB -	chrX	20844352	intron	shakB -	chrX_4_20840001	chrX_20840001	RAL-352
1350	chrX	20940718	20940755	chrX	20942187	20942224	hobo	14	1465	2.5	4.0	3.2	3.3	1506	chrX	20940718	intergenic	not near genes	chrX	20941471	intergenic	not near genes	chrX	20942224	intergenic	not near genes	chrX_14_20940001	chrX_20940001	RAL-352
1352	chrX	21086130	21086156	chrX	21087157	21087185	jockey	5	1028	2.5	0.5	1.5	2.0	1055	chrX	21086130	intergenic	not near genes	chrX	21086658	intergenic	not near genes	chrX	21087185	intergenic	not near genes	chrX_5_21085001	chrX_21085001	RAL-352
1355	chrX	21458694	21458723	chrX	21464130	21464155	Ivk	5	5434	0.0	0.5	0.2	4.2	5461	chrX	21458694	intergenic	not near genes	chrX	21461424	intergenic	not near genes	chrX	21464155	intergenic	not near genes	chrX_5_21460001	chrX_21460001	RAL-352
1358	chrX	22697508	22697523	chrX	22701783	22701820	Juan	4	4292	1.0	1.5	1.2	1.8	4312	chrX	22697508	intron	CR44997 +	chrX	22699664	intron	CR44997 +	chrX	22701820	intron	CR44997 +	chrX_4_22695001	chrX_22695001	RAL-352
1360	chrX	22771511	22771530	chrX	22774802	22774811	297	5	3287	3.0	3.0	3.0	1.2	3300	chrX	22771511	intron	CR44997 +	chrX	22773161	intron	CR44997 +	chrX	22774811	intron	CR44997 +	chrX_5_22770001	chrX_22770001	RAL-352