SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 47468 47491 chr2L 52572 52582 jockey 7 5099 2.5 6.0 4.2 1.3 5114 chr2L 47468 intron Cda5 - chr2L 50025 intron Cda5 - chr2L 52582 intron Cda5 - chr2L_7_50001 chr2L_50001 RAL-352 2 chr2L 91194 91210 chr2L 91251 91285 4 71 12.5 13.5 13.0 0.3 91 chr2L 91194 intergenic not near genes chr2L 91240 intergenic not near genes chr2L 91285 intergenic not near genes chr2L_4_90001 chr2L_90001 RAL-352 3 chr2L 127506 127518 chr2L 127600 127613 4 94 11.0 12.0 11.5 0.3 107 chr2L 127506 intron,intron CG11455 +,CG3164 - chr2L 127560 intron,intron CG11455 +,CG3164 - chr2L 127613 intron,intron CG11455 +,CG3164 - chr2L_4_125001 chr2L_125001 RAL-352 4 chr2L 134866 134868 chr2L 134954 134956 4 88 4.0 2.5 3.2 1.0 90 chr2L 134866 intron CG11455 + chr2L 134911 intron CG11455 + chr2L 134956 intron CG11455 + chr2L_4_130001 chr2L_130001 RAL-352 5 chr2L 325135 325156 chr2L 325203 325222 4 72 5.0 6.0 5.5 0.6 87 chr2L 325135 intron Plc21C + chr2L 325178 intron Plc21C + chr2L 325222 intron Plc21C + chr2L_4_325001 chr2L_325001 RAL-352 6 chr2L 467366 467490 chr2L 467465 467579 6 89 5.5 5.0 5.2 1.0 213 chr2L 467366 intron CG4297 - chr2L 467472 intron CG4297 - chr2L 467579 intron CG4297 - chr2L_6_465001 chr2L_465001 RAL-352 7 chr2L 686919 686949 chr2L 695956 695974 roo 8 9037 3.0 3.0 3.0 2.0 9055 chr2L 686919 intron ds - chr2L 691446 intron ds - chr2L 695974 intron ds - chr2L_8_690001 chr2L_690001 RAL-352 8 chr2L 749563 749576 chr2L 749629 749653 4 71 5.5 5.0 5.2 0.6 90 chr2L 749563 intergenic GABA-B-R3 + chr2L 749608 intergenic GABA-B-R3 + chr2L 749653 intergenic GABA-B-R3 + chr2L_4_745001 chr2L_745001 RAL-352 9 chr2L 770466 770487 chr2L 772244 772268 Bari1 9 1777 4.0 3.5 3.8 1.9 1802 chr2L 770466 intergenic not near genes chr2L 771367 intergenic not near genes chr2L 772268 intergenic CR44614 + chr2L_9_770001 chr2L_770001 RAL-352 10 chr2L 877851 877855 chr2L 877932 877936 4 81 11.5 14.0 12.8 0.3 85 chr2L 877851 3` UTR,exon CG15824 -,ninaA + chr2L 877894 3` UTR,intron CG15824 -,ninaA + chr2L 877936 3` UTR,intron CG15824 -,ninaA + chr2L_4_875001 chr2L_875001 RAL-352 11 chr2L 931634 931664 chr2L 931710 931743 6 77 4.5 8.0 6.2 0.8 109 chr2L 931634 intron CG4341 + chr2L 931688 intron CG4341 + chr2L 931743 intron CG4341 + chr2L_6_930001 chr2L_930001 RAL-352 12 chr2L 953495 953526 chr2L 953579 953609 5 78 4.5 4.0 4.2 1.0 114 chr2L 953495 exon CG4341 + chr2L 953552 intron CG4341 + chr2L 953609 intron CG4341 + chr2L_5_950001 chr2L_950001 RAL-352 13 chr2L 964562 964573 chr2L 964646 964657 7 82 7.0 12.0 9.5 0.7 95 chr2L 964562 intergenic not near genes chr2L 964610 intergenic not near genes chr2L 964657 intergenic not near genes chr2L_7_960001 chr2L_960001 RAL-352 14 chr2L 1035563 1035589 chr2L 1035639 1035660 8 76 7.0 7.5 7.2 1.0 97 chr2L 1035563 intron IA-2 - chr2L 1035612 intron IA-2 - chr2L 1035660 intron IA-2 - chr2L_8_1035001 chr2L_1035001 RAL-352 15 chr2L 1066096 1066109 chr2L 1066177 1066190 8 80 3.0 4.5 3.8 1.7 94 chr2L 1066096 intron S - chr2L 1066143 intron S - chr2L 1066190 intron S - chr2L_8_1065001 chr2L_1065001 RAL-352 16 chr2L 1126680 1126699 chr2L 1126747 1126747 4 66 6.5 8.5 7.5 0.5 67 chr2L 1126680 intron Pino - chr2L 1126714 intron Pino - chr2L 1126747 intron Pino - chr2L_4_1125001 chr2L_1125001 RAL-352 17 chr2L 1156861 1156885 chr2L 1156965 1156967 4 99 3.0 1.0 2.0 1.3 106 chr2L 1156861 intron capt - chr2L 1156914 intron capt - chr2L 1156967 intron capt - chr2L_4_1155001 chr2L_1155001 RAL-352 18 chr2L 1332873 1332885 chr2L 1332950 1332968 4 78 6.5 7.0 6.8 0.5 95 chr2L 1332873 intergenic not near genes chr2L 1332920 intergenic not near genes chr2L 1332968 intergenic not near genes chr2L_4_1330001 chr2L_1330001 RAL-352 19 chr2L 1372188 1372216 chr2L 1372354 1372380 5 165 7.5 11.5 9.5 0.5 192 chr2L 1372188 intergenic not near genes chr2L 1372284 intergenic not near genes chr2L 1372380 intergenic not near genes chr2L_5_1370001 chr2L_1370001 RAL-352 20 chr2L 1459849 1459875 chr2L 1459954 1459980 4 105 18.5 15.0 16.8 0.2 131 chr2L 1459849 intergenic not near genes chr2L 1459914 intergenic not near genes chr2L 1459980 intergenic not near genes chr2L_4_1455001 chr2L_1455001 RAL-352 21 chr2L 1464163 1464178 chr2L 1464394 1464408 5 231 11.5 6.5 9.0 0.5 245 chr2L 1464163 intergenic not near genes chr2L 1464286 intergenic not near genes chr2L 1464408 intergenic not near genes chr2L_5_1460001 chr2L_1460001 RAL-352 22 chr2L 1511138 1511143 chr2L 1511216 1511221 4 78 6.0 9.5 7.8 0.5 83 chr2L 1511138 intergenic not near genes chr2L 1511180 intergenic not near genes chr2L 1511221 intergenic not near genes chr2L_4_1510001 chr2L_1510001 RAL-352 23 chr2L 1570694 1570719 chr2L 1573561 1573591 F-element 6 2870 5.0 1.0 3.0 1.5 2897 chr2L 1570694 intron haf + chr2L 1572142 intron haf + chr2L 1573591 intron haf + chr2L_6_1570001 chr2L_1570001 RAL-352 24 chr2L 1620286 1620294 chr2L 1620362 1620363 4 74 2.5 6.0 4.2 0.8 77 chr2L 1620286 3` UTR CR44603 - chr2L 1620324 3` UTR CR44603 - chr2L 1620363 3` UTR CR44603 - chr2L_4_1620001 chr2L_1620001 RAL-352 25 chr2L 1635401 1635427 chr2L 1635535 1635563 5 131 0.5 2.5 1.5 2.0 162 chr2L 1635401 intergenic not near genes chr2L 1635482 intergenic not near genes chr2L 1635563 intergenic not near genes chr2L_5_1635001 chr2L_1635001 RAL-352 26 chr2L 1711363 1711383 chr2L 1711681 1711692 mdg3 9 316 6.0 2.5 4.2 1.7 329 chr2L 1711363 3` UTR,3` UTR mRpL48 +,frtz - chr2L 1711528 3` UTR frtz - chr2L 1711692 3` UTR frtz - chr2L_9_1710001 chr2L_1710001 RAL-352 27 chr2L 1914264 1914279 chr2L 1914485 1914495 4 219 3.5 9.0 6.2 0.6 231 chr2L 1914264 intron CG7337 + chr2L 1914380 intron CG7337 + chr2L 1914495 intron CG7337 + chr2L_4_1910001 chr2L_1910001 RAL-352 28 chr2L 1993202 1993222 chr2L 1993288 1993305 4 85 6.5 5.5 6.0 0.6 103 chr2L 1993202 intergenic not near genes chr2L 1993254 intergenic not near genes chr2L 1993305 intergenic not near genes chr2L_4_1990001 chr2L_1990001 RAL-352 29 chr2L 2100375 2100407 chr2L 2109526 2109558 roo 13 9148 2.5 5.0 3.8 2.7 9183 chr2L 2100375 intron dpr3 - chr2L 2104966 intron dpr3 - chr2L 2109558 intron dpr3 - chr2L_13_2100001 chr2L_2100001 RAL-352 30 chr2L 2246176 2246196 chr2L 2246253 2246290 7 91 5.5 9.0 7.2 0.9 114 chr2L 2246176 5` UTR CR42859 + chr2L 2246233 5` UTR CR42859 + chr2L 2246290 5` UTR CR42859 + chr2L_7_2245001 chr2L_2245001 RAL-352 31 chr2L 2294062 2294075 chr2L 2299252 2299263 copia 5 5192 1.5 5.0 3.2 1.2 5201 chr2L 2294062 intergenic not near genes chr2L 2296662 intergenic not near genes chr2L 2299263 intergenic not near genes chr2L_5_2295001 chr2L_2295001 RAL-352 32 chr2L 2302051 2302072 chr2L 2302133 2302138 4 78 15.0 13.0 14.0 0.3 87 chr2L 2302051 intergenic not near genes chr2L 2302094 intergenic not near genes chr2L 2302138 intergenic not near genes chr2L_4_2300001 chr2L_2300001 RAL-352 33 chr2L 2481982 2481996 chr2L 2482062 2482073 4 78 9.5 12.0 10.8 0.3 91 chr2L 2481982 intergenic not near genes chr2L 2482028 intergenic not near genes chr2L 2482073 intergenic not near genes chr2L_4_2480001 chr2L_2480001 RAL-352 34 chr2L 2552749 2552774 chr2L 2552816 2552853 4 76 4.0 5.0 4.5 0.7 104 chr2L 2552749 exon CG3515 - chr2L 2552801 5` UTR CG3515 - chr2L 2552853 intergenic CG3515 - chr2L_4_2550001 chr2L_2550001 RAL-352 35 chr2L 2637226 2637259 chr2L 2637324 2637357 6 96 13.5 15.0 14.2 0.4 131 chr2L 2637226 intergenic not near genes chr2L 2637292 intergenic not near genes chr2L 2637357 intergenic not near genes chr2L_6_2635001 chr2L_2635001 RAL-352 36 chr2L 2661194 2661219 chr2L 2663032 2663035 I-element 4 1832 1.0 1.5 1.2 1.8 1841 chr2L 2661194 intergenic not near genes chr2L 2662114 intergenic not near genes chr2L 2663035 intergenic not near genes chr2L_4_2660001 chr2L_2660001 RAL-352 37 chr2L 2667636 2667658 chr2L 2667715 2667725 9 78 2.5 5.5 4.0 1.8 89 chr2L 2667636 intergenic not near genes chr2L 2667680 intergenic not near genes chr2L 2667725 intergenic not near genes chr2L_9_2665001 chr2L_2665001 RAL-352 38 chr2L 2698878 2698892 chr2L 2698964 2698979 4 87 8.0 10.0 9.0 0.4 101 chr2L 2698878 intron CG31690 + chr2L 2698928 intron CG31690 + chr2L 2698979 intron CG31690 + chr2L_4_2695001 chr2L_2695001 RAL-352 39 chr2L 2772611 2772623 chr2L 2779195 2779204 297 6 6583 2.0 1.0 1.5 2.4 6593 chr2L 2772611 3` UTR Syt1 - chr2L 2775908 intron Syt1 - chr2L 2779204 3` UTR Syt1 - chr2L_6_2775001 chr2L_2775001 RAL-352 40 chr2L 3007474 3007485 chr2L 3007842 3007849 4 367 2.0 9.5 5.8 0.6 375 chr2L 3007474 intron CG17265 + chr2L 3007662 intron CG17265 + chr2L 3007849 intron CG17265 + chr2L_4_3005001 chr2L_3005001 RAL-352 41 chr2L 3073038 3073064 chr2L 3078241 3078267 copia 10 5200 2.0 6.0 4.0 2.0 5229 chr2L 3073038 intron toc - chr2L 3075652 intron toc - chr2L 3078267 intron toc - chr2L_10_3075001 chr2L_3075001 RAL-352 42 chr2L 3108871 3108899 chr2L 3108948 3108976 7 72 3.5 0.5 2.0 2.3 105 chr2L 3108871 intron toc - chr2L 3108924 intron toc - chr2L 3108976 intron toc - chr2L_7_3105001 chr2L_3105001 RAL-352 43 chr2L 3125013 3125034 chr2L 3125095 3125108 4 76 12.0 8.5 10.2 0.4 95 chr2L 3125013 intron toc - chr2L 3125060 intron toc - chr2L 3125108 exon toc - chr2L_4_3125001 chr2L_3125001 RAL-352 44 chr2L 3147276 3147304 chr2L 3147353 3147364 10 71 12.0 11.0 11.5 0.8 88 chr2L 3147276 3` UTR Mad - chr2L 3147320 3` UTR Mad - chr2L 3147364 3` UTR Mad - chr2L_10_3145001 chr2L_3145001 RAL-352 45 chr2L 3192213 3192242 chr2L 3192324 3192353 4 109 2.0 3.5 2.8 1.1 140 chr2L 3192213 exon CG34393 - chr2L 3192283 intron CG34393 - chr2L 3192353 intron CG34393 - chr2L_4_3190001 chr2L_3190001 RAL-352 46 chr2L 3251497 3251522 chr2L 3259062 3259087 springer 4 7565 2.0 0.5 1.2 1.8 7590 chr2L 3251497 intergenic not near genes chr2L 3255292 intergenic not near genes chr2L 3259087 intergenic not near genes chr2L_4_3255001 chr2L_3255001 RAL-352 47 chr2L 3393559 3393579 chr2L 3393668 3393690 4 110 1.0 2.5 1.8 1.4 131 chr2L 3393559 intergenic not near genes chr2L 3393624 intergenic not near genes chr2L 3393690 intergenic not near genes chr2L_4_3390001 chr2L_3390001 RAL-352 48 chr2L 3508352 3508370 chr2L 3508429 3508441 6 76 1.0 1.0 1.0 3.0 89 chr2L 3508352 intergenic tim -,CR45299 + chr2L 3508396 intergenic CR45299 +,tim - chr2L 3508441 intergenic CR45299 +,tim - chr2L_6_3505001 chr2L_3505001 RAL-352 49 chr2L 3535484 3535498 chr2L 3535564 3535578 5 80 0.5 1.5 1.0 2.5 94 chr2L 3535484 intergenic not near genes chr2L 3535531 intergenic not near genes chr2L 3535578 intergenic not near genes chr2L_5_3535001 chr2L_3535001 RAL-352 50 chr2L 3663308 3663342 chr2L 3663386 3663417 9 77 1.0 1.5 1.2 4.1 109 chr2L 3663308 intron CG34340 + chr2L 3663362 intron CG34340 + chr2L 3663417 intron CG34340 + chr2L_9_3660001 chr2L_3660001 RAL-352 51 chr2L 3741358 3741382 chr2L 3741434 3741459 7 75 9.5 5.0 7.2 0.9 101 chr2L 3741358 intron CG10019 + chr2L 3741408 intron CG10019 + chr2L 3741459 intron CG10019 + chr2L_7_3740001 chr2L_3740001 RAL-352 52 chr2L 4060178 4060199 chr2L 4060246 4060273 4 72 5.5 6.0 5.8 0.6 95 chr2L 4060178 intron ed + chr2L 4060226 intron ed + chr2L 4060273 intron ed + chr2L_4_4060001 chr2L_4060001 RAL-352 53 chr2L 4066048 4066066 chr2L 4068873 4068888 Juan 4 2824 3.5 2.0 2.8 1.1 2840 chr2L 4066048 intron ed + chr2L 4067468 intron ed + chr2L 4068888 intron ed + chr2L_4_4065001 chr2L_4065001 RAL-352 54 chr2L 4317881 4317910 chr2L 4317959 4317988 6 78 0.5 1.0 0.8 3.3 107 chr2L 4317881 intron tutl + chr2L 4317934 intron tutl + chr2L 4317988 intron tutl + chr2L_6_4315001 chr2L_4315001 RAL-352 55 chr2L 4351475 4351501 chr2L 4351551 4351577 4 74 12.5 11.0 11.8 0.3 102 chr2L 4351475 intergenic CR44700 + chr2L 4351526 intergenic CR44700 + chr2L 4351577 intergenic CR44700 + chr2L_4_4350001 chr2L_4350001 RAL-352 56 chr2L 4388434 4388462 chr2L 4388578 4388599 11 138 15.0 8.5 11.8 0.9 165 chr2L 4388434 5` UTR Tps1 + chr2L 4388516 5` UTR Tps1 + chr2L 4388599 5` UTR Tps1 + chr2L_11_4385001 chr2L_4385001 RAL-352 57 chr2L 4601703 4601737 chr2L 4609143 4609177 mdg1 13 7439 5.5 3.0 4.2 2.5 7474 chr2L 4601703 intron dp - chr2L 4605440 intron dp - chr2L 4609177 intron dp - chr2L_13_4605001 chr2L_4605001 RAL-352 58 chr2L 4672095 4672107 chr2L 4672171 4672175 4 74 7.5 9.5 8.5 0.4 80 chr2L 4672095 intergenic not near genes chr2L 4672135 intergenic not near genes chr2L 4672175 intergenic not near genes chr2L_4_4670001 chr2L_4670001 RAL-352 59 chr2L 4819497 4819518 chr2L 4819616 4819627 7 118 2.0 2.0 2.0 2.3 130 chr2L 4819497 intergenic not near genes chr2L 4819562 intergenic not near genes chr2L 4819627 intergenic not near genes chr2L_7_4815001 chr2L_4815001 RAL-352 60 chr2L 4879148 4879176 chr2L 4880379 4880407 10 1228 26.5 21.0 23.8 0.4 1259 chr2L 4879148 exon Cf2 - chr2L 4879778 intron Cf2 - chr2L 4880407 exon Cf2 - chr2L_10_4875001 chr2L_4875001 RAL-352 61 chr2L 4918165 4918175 chr2L 4923238 4923248 jockey 4 5071 0.5 0.0 0.2 3.3 5083 chr2L 4918165 intron hoe1 - chr2L 4920706 intron hoe1 - chr2L 4923248 intron hoe1 - chr2L_4_4920001 chr2L_4920001 RAL-352 62 chr2L 5120980 5121004 chr2L 5121070 5121092 13 90 1.5 4.0 2.8 3.4 112 chr2L 5120980 intron Msp300 + chr2L 5121036 intron Msp300 + chr2L 5121092 intron Msp300 + chr2L_13_5120001 chr2L_5120001 RAL-352 63 chr2L 5147745 5147756 chr2L 5147960 5147988 4 224 11.5 6.0 8.8 0.4 243 chr2L 5147745 intron Msp300 + chr2L 5147866 intron Msp300 + chr2L 5147988 intron Msp300 + chr2L_4_5145001 chr2L_5145001 RAL-352 64 chr2L 5207299 5207324 chr2L 5209314 5209339 4 2015 27.0 19.5 23.2 0.2 2040 chr2L 5207299 5` UTR Cyp28d2 + chr2L 5208319 exon Cyp28d2 + chr2L 5209339 3` UTR Cyp28d2 + chr2L_4_5205001 chr2L_5205001 RAL-352 65 chr2L 5206805 5206836 chr2L 5209750 5209781 6 2945 5.0 15.5 10.2 0.5 2976 chr2L 5206805 3` UTR Msp300 + chr2L 5208293 exon Cyp28d2 + chr2L 5209781 intergenic Cyp28d2 + chr2L_6_5205001 chr2L_5205001 RAL-352 66 chr2L 5242869 5242900 chr2L 5243059 5243090 7 190 8.5 11.5 10.0 0.6 221 chr2L 5242869 intron tkv - chr2L 5242980 intron tkv - chr2L 5243090 intron tkv - chr2L_7_5240001 chr2L_5240001 RAL-352 67 chr2L 5247283 5247287 chr2L 5247840 5247851 4 560 9.0 7.0 8.0 0.4 568 chr2L 5247283 intron tkv - chr2L 5247567 intron tkv - chr2L 5247851 intron tkv - chr2L_4_5245001 chr2L_5245001 RAL-352 68 chr2L 5508540 5508551 chr2L 5508616 5508626 4 75 1.5 2.5 2.0 1.3 86 chr2L 5508540 intergenic not near genes chr2L 5508583 intergenic not near genes chr2L 5508626 intergenic not near genes chr2L_4_5505001 chr2L_5505001 RAL-352 69 chr2L 5806661 5806688 chr2L 5806757 5806767 6 93 14.5 14.5 14.5 0.4 106 chr2L 5806661 intron CG11034 + chr2L 5806714 exon CG11034 + chr2L 5806767 exon CG11034 + chr2L_6_5805001 chr2L_5805001 RAL-352 70 chr2L 5827710 5827741 chr2L 5836718 5836735 roo 10 9003 5.0 4.5 4.8 1.7 9025 chr2L 5827710 intron TrissinR + chr2L 5832222 intron TrissinR + chr2L 5836735 intron TrissinR + chr2L_10_5830001 chr2L_5830001 RAL-352 71 chr2L 5843050 5843055 chr2L 5843135 5843142 5 91 10.0 11.0 10.5 0.4 92 chr2L 5843050 intron TrissinR + chr2L 5843096 intron TrissinR + chr2L 5843142 intron TrissinR + chr2L_5_5840001 chr2L_5840001 RAL-352 72 chr2L 6050450 6050468 chr2L 6050554 6050572 4 104 3.5 1.0 2.2 1.2 122 chr2L 6050450 intergenic CG12393 +,CG9135 + chr2L 6050511 intergenic CG12393 +,CG9135 + chr2L 6050572 intergenic CG12393 +,CG9135 + chr2L_4_6050001 chr2L_6050001 RAL-352 73 chr2L 6103229 6103247 chr2L 6103305 6103308 5 71 9.0 15.0 12.0 0.4 79 chr2L 6103229 intron stai + chr2L 6103268 intron stai + chr2L 6103308 intron stai + chr2L_5_6100001 chr2L_6100001 RAL-352 74 chr2L 6261968 6261999 chr2L 6262044 6262071 4 68 10.5 4.0 7.2 0.5 103 chr2L 6261968 intron Ddr + chr2L 6262020 intron Ddr + chr2L 6262071 intron Ddr + chr2L_4_6260001 chr2L_6260001 RAL-352 75 chr2L 6300568 6300584 chr2L 6300645 6300669 5 84 12.0 10.0 11.0 0.4 101 chr2L 6300568 intron Ddr + chr2L 6300618 intron Ddr + chr2L 6300669 intron Ddr + chr2L_5_6300001 chr2L_6300001 RAL-352 76 chr2L 6363155 6363181 chr2L 6366071 6366103 Burdock 9 2916 1.5 4.0 2.8 2.4 2948 chr2L 6363155 intergenic not near genes chr2L 6364629 intergenic not near genes chr2L 6366103 intergenic not near genes chr2L_9_6360001 chr2L_6360001 RAL-352 77 chr2L 6426861 6426889 chr2L 6445113 6445140 roo 10 18257 4.0 4.5 4.2 1.9 18279 chr2L 6426861 3` UTR CG9527 - chr2L 6436000 intron CG9527 - chr2L 6445140 exon CG9527 - chr2L_10_6435001 chr2L_6435001 RAL-352 78 chr2L 6463567 6463574 chr2L 6463647 6463655 5 83 8.0 6.0 7.0 0.6 88 chr2L 6463567 exon CG16947 - chr2L 6463611 exon CG16947 - chr2L 6463655 exon CG16947 - chr2L_5_6460001 chr2L_6460001 RAL-352 79 chr2L 6471741 6471748 chr2L 6471822 6471830 4 82 7.5 11.5 9.5 0.4 89 chr2L 6471741 intron mmy - chr2L 6471786 intron mmy - chr2L 6471830 intron mmy - chr2L_4_6470001 chr2L_6470001 RAL-352 80 chr2L 6590098 6590109 chr2L 6590171 6590176 6 75 10.0 8.0 9.0 0.6 78 chr2L 6590098 intron CG11319 - chr2L 6590137 intron CG11319 - chr2L 6590176 intron CG11319 - chr2L_6_6590001 chr2L_6590001 RAL-352 81 chr2L 6692966 6692972 chr2L 6693027 6693048 4 65 8.5 9.5 9.0 0.4 82 chr2L 6692966 intron Tsp - chr2L 6693007 intron Tsp - chr2L 6693048 intron Tsp - chr2L_4_6690001 chr2L_6690001 RAL-352 82 chr2L 6701381 6701401 chr2L 6701458 6701467 4 75 8.0 6.0 7.0 0.5 86 chr2L 6701381 intron Tsp - chr2L 6701424 intron Tsp - chr2L 6701467 intron Tsp - chr2L_4_6700001 chr2L_6700001 RAL-352 83 chr2L 6771998 6772020 chr2L 6772073 6772086 7 72 2.5 3.5 3.0 1.8 88 chr2L 6771998 intron CG11321 - chr2L 6772042 intron CG11321 - chr2L 6772086 intron CG11321 - chr2L_7_6770001 chr2L_6770001 RAL-352 84 chr2L 6799545 6799563 chr2L 6799627 6799651 5 84 2.0 1.0 1.5 2.0 106 chr2L 6799545 5` UTR CR43610 + chr2L 6799598 5` UTR CR43610 + chr2L 6799651 intergenic CR43610 +,CG17376 - chr2L_5_6795001 chr2L_6795001 RAL-352 85 chr2L 6876794 6876809 chr2L 6882969 6882977 diver 4 6181 4.0 3.5 3.8 0.8 6183 chr2L 6876794 intron Nlg2 + chr2L 6879886 intron Nlg2 + chr2L 6882977 intron Nlg2 + chr2L_4_6875001 chr2L_6875001 RAL-352 86 chr2L 6883745 6883770 chr2L 6883830 6883855 5 82 9.5 11.5 10.5 0.4 110 chr2L 6883745 intron Nlg2 + chr2L 6883800 intron Nlg2 + chr2L 6883855 intron Nlg2 + chr2L_5_6880001 chr2L_6880001 RAL-352 87 chr2L 7090000 7090021 chr2L 7090077 7090087 4 72 6.5 5.0 5.8 0.6 87 chr2L 7090000 intergenic not near genes chr2L 7090044 intergenic not near genes chr2L 7090087 intergenic not near genes chr2L_4_7090001 chr2L_7090001 RAL-352 88 chr2L 7266528 7266550 chr2L 7267663 7267685 6 1134 25.5 18.0 21.8 0.3 1157 chr2L 7266528 intron Wnt4 - chr2L 7267106 intron Wnt4 - chr2L 7267685 intron Wnt4 - chr2L_6_7265001 chr2L_7265001 RAL-352 89 chr2L 7343326 7343358 chr2L 7350442 7350473 roo 12 7114 5.0 4.5 4.8 2.1 7147 chr2L 7343326 intron Wnt6 + chr2L 7346900 intron Wnt6 + chr2L 7350473 intron Wnt6 + chr2L_12_7345001 chr2L_7345001 RAL-352 90 chr2L 7375813 7375833 chr2L 7375916 7375945 4 109 8.5 5.5 7.0 0.5 132 chr2L 7375813 exon Wnt10 + chr2L 7375879 intron Wnt10 + chr2L 7375945 intron Wnt10 + chr2L_4_7375001 chr2L_7375001 RAL-352 91 chr2L 7511282 7511306 chr2L 7511372 7511394 5 89 10.5 9.0 9.8 0.5 112 chr2L 7511282 intron RapGAP1 - chr2L 7511338 intron RapGAP1 - chr2L 7511394 intron RapGAP1 - chr2L_5_7510001 chr2L_7510001 RAL-352 92 chr2L 7629161 7629190 chr2L 7629248 7629277 4 83 11.0 14.5 12.8 0.3 116 chr2L 7629161 intergenic not near genes chr2L 7629219 intergenic not near genes chr2L 7629277 intergenic not near genes chr2L_4_7625001 chr2L_7625001 RAL-352 93 chr2L 7766629 7766649 chr2L 7766705 7766708 4 71 5.0 2.5 3.8 0.8 79 chr2L 7766629 intergenic not near genes chr2L 7766668 intergenic not near genes chr2L 7766708 intergenic not near genes chr2L_4_7765001 chr2L_7765001 RAL-352 94 chr2L 7959044 7959058 chr2L 7960454 7960463 pogo 5 1409 3.5 0.0 1.8 1.8 1419 chr2L 7959044 intron Snoo - chr2L 7959754 intron Snoo - chr2L 7960463 intron Snoo - chr2L_5_7955001 chr2L_7955001 RAL-352 95 chr2L 7985316 7985325 chr2L 7985405 7985421 4 93 15.0 16.5 15.8 0.2 105 chr2L 7985316 intron CG7231 + chr2L 7985368 intron CG7231 + chr2L 7985421 intron CG7231 + chr2L_4_7985001 chr2L_7985001 RAL-352 96 chr2L 8003042 8003069 chr2L 8003123 8003151 4 78 0.0 0.0 0.0 4.0 109 chr2L 8003042 intron Wwox - chr2L 8003096 intron Wwox - chr2L 8003151 intron Wwox - chr2L_4_8000001 chr2L_8000001 RAL-352 97 chr2L 8044096 8044130 chr2L 8044175 8044196 11 75 3.5 2.0 2.8 2.9 100 chr2L 8044096 intron CG7466 + chr2L 8044146 intron CG7466 + chr2L 8044196 intron CG7466 + chr2L_11_8040001 chr2L_8040001 RAL-352 98 chr2L 8184929 8184946 chr2L 8185012 8185037 4 86 1.0 9.5 5.2 0.6 108 chr2L 8184929 intron Piezo + chr2L 8184983 intron Piezo + chr2L 8185037 intron Piezo + chr2L_4_8180001 chr2L_8180001 RAL-352 99 chr2L 8285026 8285032 chr2L 8285102 8285108 4 76 1.5 2.0 1.8 1.4 82 chr2L 8285026 intron Btk29A - chr2L 8285067 intron Btk29A - chr2L 8285108 intron Btk29A - chr2L_4_8285001 chr2L_8285001 RAL-352 100 chr2L 8336942 8336962 chr2L 8337013 8337040 4 76 4.5 3.5 4.0 0.8 98 chr2L 8336942 intergenic not near genes chr2L 8336991 intergenic not near genes chr2L 8337040 intergenic not near genes chr2L_4_8335001 chr2L_8335001 RAL-352 101 chr2L 8349613 8349628 chr2L 8349718 8349733 6 105 5.0 2.5 3.8 1.2 120 chr2L 8349613 intron CG7778 + chr2L 8349673 intron CG7778 + chr2L 8349733 intron CG7778 + chr2L_6_8345001 chr2L_8345001 RAL-352 102 chr2L 8452423 8452448 chr2L 8461591 8461619 roo 4 9163 1.0 1.0 1.0 2.0 9196 chr2L 8452423 intron fu12 - chr2L 8457021 intron fu12 - chr2L 8461619 intron fu12 - chr2L_4_8455001 chr2L_8455001 RAL-352 103 chr2L 8594463 8594494 chr2L 8601517 8601536 297 4 7050 2.5 1.5 2.0 1.3 7073 chr2L 8594463 intron,3` UTR Sema-1a +,CR43855 - chr2L 8598000 intron Sema-1a + chr2L 8601536 intron Sema-1a + chr2L_4_8595001 chr2L_8595001 RAL-352 104 chr2L 8689701 8689723 chr2L 8689798 8689820 6 96 6.5 7.5 7.0 0.8 119 chr2L 8689701 intron Hnf4 - chr2L 8689760 intron Hnf4 - chr2L 8689820 exon Hnf4 - chr2L_6_8685001 chr2L_8685001 RAL-352 105 chr2L 8689726 8689733 chr2L 8689797 8689830 4 86 5.5 7.5 6.5 0.5 104 chr2L 8689726 intron Hnf4 - chr2L 8689778 intron Hnf4 - chr2L 8689830 exon Hnf4 - chr2L_4_8685001 chr2L_8685001 RAL-352 106 chr2L 8723122 8723147 chr2L 8731497 8731523 Tirant 5 8376 1.0 3.0 2.0 1.7 8401 chr2L 8723122 intron raw - chr2L 8727322 intron raw - chr2L 8731523 intron raw - chr2L_5_8725001 chr2L_8725001 RAL-352 107 chr2L 9000283 9000311 chr2L 9007793 9007817 roo 6 7509 3.5 1.5 2.5 1.7 7534 chr2L 9000283 intergenic Try29F + chr2L 9004050 intergenic not near genes chr2L 9007817 intergenic not near genes chr2L_6_9000001 chr2L_9000001 RAL-352 108 chr2L 9025822 9025854 chr2L 9025906 9025911 11 78 10.5 7.0 8.8 1.1 89 chr2L 9025822 intron,3` UTR CG9582 -,CR44352 - chr2L 9025866 intron,3` UTR CG9582 -,CR44352 - chr2L 9025911 intron,3` UTR CG9582 -,CR44352 - chr2L_11_9025001 chr2L_9025001 RAL-352 109 chr2L 9084336 9084340 chr2L 16217660 16217660 15 7133322 16.0 16.0 16.0 0.9 7133324 chr2L 9084336 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_15_12650001 chr2L_12650001 RAL-352 110 chr2L 9217983 9218003 chr2L 9222770 9222790 Doc 4 4786 3.5 3.5 3.5 0.9 4807 chr2L 9217983 intron tai + chr2L 9220386 intron tai + chr2L 9222790 intron tai + chr2L_4_9220001 chr2L_9220001 RAL-352 111 chr2L 9297381 9297402 chr2L 9297458 9297479 8 77 2.0 4.5 3.2 1.9 98 chr2L 9297381 3` UTR Ggamma30A + chr2L 9297430 3` UTR Ggamma30A + chr2L 9297479 3` UTR Ggamma30A + chr2L_8_9295001 chr2L_9295001 RAL-352 112 chr2L 9361349 9361359 chr2L 9361410 9361436 4 73 5.5 10.0 7.8 0.5 87 chr2L 9361349 intergenic not near genes chr2L 9361392 intergenic not near genes chr2L 9361436 intergenic not near genes chr2L_4_9360001 chr2L_9360001 RAL-352 113 chr2L 9380249 9380320 chr2L 9380344 9380408 5 89 2.0 2.5 2.2 1.6 159 chr2L 9380249 exon Shawl - chr2L 9380328 intron Shawl - chr2L 9380408 intron Shawl - chr2L_5_9380001 chr2L_9380001 RAL-352 114 chr2L 9393504 9393523 chr2L 9396469 9396490 jockey 6 2965 5.0 5.5 5.2 1.0 2986 chr2L 9393504 intron Shawl - chr2L 9394997 intron Shawl - chr2L 9396490 intron Shawl - chr2L_6_9390001 chr2L_9390001 RAL-352 115 chr2L 9610126 9610140 chr2L 9610187 9610219 4 69 8.0 3.5 5.8 0.6 93 chr2L 9610126 intron gcm2 + chr2L 9610172 intron gcm2 + chr2L 9610219 intron gcm2 + chr2L_4_9610001 chr2L_9610001 RAL-352 116 chr2L 9686348 9686371 chr2L 9686432 9686455 8 82 12.5 10.5 11.5 0.6 107 chr2L 9686348 intron Pka-C1 - chr2L 9686402 intron Pka-C1 - chr2L 9686455 intron Pka-C1 - chr2L_8_9685001 chr2L_9685001 RAL-352 117 chr2L 9973727 9973754 chr2L 9980846 9980873 HMS-Beagle 8 7112 4.5 7.5 6.0 1.1 7146 chr2L 9973727 intergenic not near genes chr2L 9977300 intergenic not near genes chr2L 9980873 intergenic not near genes chr2L_8_9975001 chr2L_9975001 RAL-352 118 chr2L 10023082 10023102 chr2L 10023161 10023186 5 82 10.5 11.0 10.8 0.4 104 chr2L 10023082 intergenic not near genes chr2L 10023134 intergenic not near genes chr2L 10023186 intergenic not near genes chr2L_5_10020001 chr2L_10020001 RAL-352 119 chr2L 10051735 10051749 chr2L 10051819 10051834 6 82 15.5 12.0 13.8 0.4 99 chr2L 10051735 5` UTR CR44874 + chr2L 10051784 5` UTR CR44874 + chr2L 10051834 5` UTR CR44874 + chr2L_6_10050001 chr2L_10050001 RAL-352 120 chr2L 10156332 10156353 chr2L 10163800 10163823 blood 9 7465 2.5 6.5 4.5 1.6 7491 chr2L 10156332 intron,3` UTR CG44153 -,CG4839 + chr2L 10160078 intron CG44153 - chr2L 10163823 intron CG44153 - chr2L_9_10160001 chr2L_10160001 RAL-352 121 chr2L 10515375 10515384 chr2L 10515466 10515477 4 92 1.5 2.0 1.8 1.4 102 chr2L 10515375 intron,intron CG45083 -,Fatp - chr2L 10515426 intron,intron CG45083 -,Fatp - chr2L 10515477 intron,intron CG45083 -,Fatp - chr2L_4_10515001 chr2L_10515001 RAL-352 122 chr2L 10572715 10572734 chr2L 10572793 10572815 6 80 8.0 4.5 6.2 0.8 100 chr2L 10572715 intron Trim9 + chr2L 10572765 intron Trim9 + chr2L 10572815 intron Trim9 + chr2L_6_10570001 chr2L_10570001 RAL-352 123 chr2L 10592846 10592870 chr2L 10600508 10600532 opus 4 7658 0.0 2.0 1.0 2.0 7686 chr2L 10592846 intron Trim9 + chr2L 10596689 intron Trim9 + chr2L 10600532 intron Trim9 + chr2L_4_10595001 chr2L_10595001 RAL-352 124 chr2L 10620761 10620793 chr2L 10620862 10620895 7 101 3.0 5.0 4.0 1.4 134 chr2L 10620761 intron Trim9 + chr2L 10620828 intron Trim9 + chr2L 10620895 intron Trim9 + chr2L_7_10620001 chr2L_10620001 RAL-352 125 chr2L 10640638 10640669 chr2L 10640727 10640758 4 87 16.5 20.0 18.2 0.2 120 chr2L 10640638 exon CG31872 + chr2L 10640698 exon CG31872 + chr2L 10640758 exon CG31872 + chr2L_4_10640001 chr2L_10640001 RAL-352 126 chr2L 10801980 10801998 chr2L 10802061 10802075 5 80 8.5 14.5 11.5 0.4 95 chr2L 10801980 3` UTR CR44581 - chr2L 10802028 3` UTR CR44581 - chr2L 10802075 3` UTR CR44581 - chr2L_5_10800001 chr2L_10800001 RAL-352 127 chr2L 10912991 10913002 chr2L 10913064 10913073 5 76 8.0 4.0 6.0 0.7 82 chr2L 10912991 intergenic not near genes chr2L 10913032 intergenic not near genes chr2L 10913073 intergenic not near genes chr2L_5_10910001 chr2L_10910001 RAL-352 128 chr2L 10946951 10946976 chr2L 10956165 10956186 roo 18 9212 4.0 8.0 6.0 2.6 9235 chr2L 10946951 intron dpr2 - chr2L 10951568 intron dpr2 - chr2L 10956186 intron dpr2 - chr2L_18_10950001 chr2L_10950001 RAL-352 129 chr2L 11169477 11169503 chr2L 11169612 11169638 5 135 4.5 1.0 2.8 1.3 161 chr2L 11169477 intron Ca-beta - chr2L 11169558 intron Ca-beta - chr2L 11169638 intron Ca-beta - chr2L_5_11165001 chr2L_11165001 RAL-352 130 chr2L 11249903 11249917 chr2L 11250031 11250033 5 125 5.0 11.0 8.0 0.6 130 chr2L 11249903 intron ab + chr2L 11249968 intron ab + chr2L 11250033 intron ab + chr2L_5_11245001 chr2L_11245001 RAL-352 131 chr2L 11453128 11453154 chr2L 11453236 11453242 4 103 5.5 6.5 6.0 0.6 114 chr2L 11453128 intergenic not near genes chr2L 11453185 intergenic not near genes chr2L 11453242 intergenic not near genes chr2L_4_11450001 chr2L_11450001 RAL-352 132 chr2L 11455563 11455596 chr2L 11455647 11455681 8 84 5.5 12.0 8.8 0.8 118 chr2L 11455563 intergenic not near genes chr2L 11455622 intergenic not near genes chr2L 11455681 intergenic not near genes chr2L_8_11455001 chr2L_11455001 RAL-352 133 chr2L 11561728 11561754 chr2L 11561814 11561840 6 86 7.5 5.0 6.2 0.8 112 chr2L 11561728 5` UTR CR44495 + chr2L 11561784 5` UTR CR44495 + chr2L 11561840 5` UTR CR44495 + chr2L_6_11560001 chr2L_11560001 RAL-352 134 chr2L 11563634 11563654 chr2L 11568838 11568857 copia 5 5203 5.0 0.0 2.5 1.4 5223 chr2L 11563634 intergenic not near genes chr2L 11566246 intergenic not near genes chr2L 11568857 intergenic not near genes chr2L_5_11565001 chr2L_11565001 RAL-352 135 chr2L 11612680 11612691 chr2L 11612765 11612779 7 87 6.5 7.5 7.0 0.9 99 chr2L 11612680 intron kek2 + chr2L 11612730 intron kek2 + chr2L 11612779 intron kek2 + chr2L_7_11610001 chr2L_11610001 RAL-352 136 chr2L 11710051 11710071 chr2L 11710129 11710150 5 78 7.0 2.5 4.8 0.9 99 chr2L 11710051 intergenic not near genes chr2L 11710100 intergenic not near genes chr2L 11710150 intergenic not near genes chr2L_5_11710001 chr2L_11710001 RAL-352 137 chr2L 11713506 11713536 chr2L 11720974 11721004 blood 10 7466 1.5 1.0 1.2 4.5 7498 chr2L 11713506 intergenic not near genes chr2L 11717255 intergenic not near genes chr2L 11721004 intergenic CR44143 + chr2L_10_11715001 chr2L_11715001 RAL-352 138 chr2L 11743746 11743772 chr2L 11743823 11743849 4 77 9.0 7.5 8.2 0.4 103 chr2L 11743746 intron,3` UTR Vha100-5 +,CR44144 - chr2L 11743798 intron,3` UTR Vha100-5 +,CR44144 - chr2L 11743849 exon,3` UTR Vha100-5 +,CR44144 - chr2L_4_11740001 chr2L_11740001 RAL-352 139 chr2L 11925591 11925626 chr2L 11925680 11925712 9 86 9.0 9.0 9.0 0.9 121 chr2L 11925591 5` UTR Pde1c - chr2L 11925652 5` UTR Pde1c - chr2L 11925712 5` UTR Pde1c - chr2L_9_11925001 chr2L_11925001 RAL-352 140 chr2L 11934500 11934522 chr2L 11934581 11934585 4 76 4.0 1.5 2.8 1.1 85 chr2L 11934500 intergenic Or33a + chr2L 11934542 exon Or33a + chr2L 11934585 exon Or33a + chr2L_4_11930001 chr2L_11930001 RAL-352 141 chr2L 12117446 12117462 chr2L 12117527 12117543 4 81 7.5 3.5 5.5 0.6 97 chr2L 12117446 intron CG17211 + chr2L 12117494 intron CG17211 + chr2L 12117543 intron CG17211 + chr2L_4_12115001 chr2L_12115001 RAL-352 142 chr2L 12157608 12157638 chr2L 12157687 12157716 8 78 11.0 7.0 9.0 0.8 108 chr2L 12157608 intron CG31760 + chr2L 12157662 intron CG31760 + chr2L 12157716 intron CG31760 + chr2L_8_12155001 chr2L_12155001 RAL-352 143 chr2L 12234033 12234067 chr2L 12234128 12234157 5 90 4.5 7.0 5.8 0.7 124 chr2L 12234033 intron aret + chr2L 12234095 intron aret + chr2L 12234157 intron aret + chr2L_5_12230001 chr2L_12230001 RAL-352 144 chr2L 12387933 12387951 chr2L 12388020 12388035 6 95 8.0 8.0 8.0 0.7 102 chr2L 12387933 intron bru-2 + chr2L 12387984 intron bru-2 + chr2L 12388035 intron bru-2 + chr2L_6_12385001 chr2L_12385001 RAL-352 145 chr2L 12487891 12487910 chr2L 12487967 12487985 8 77 8.0 2.5 5.2 1.3 94 chr2L 12487891 intron bun - chr2L 12487938 intron bun - chr2L 12487985 intron bun - chr2L_8_12485001 chr2L_12485001 RAL-352 146 chr2L 12558319 12558353 chr2L 12565448 12565482 HMS-Beagle 6 7126 1.5 2.5 2.0 2.0 7163 chr2L 12558319 intergenic not near genes chr2L 12561900 intergenic not near genes chr2L 12565482 intergenic not near genes chr2L_6_12560001 chr2L_12560001 RAL-352 147 chr2L 12731057 12731086 chr2L 12735824 12735853 F-element 6 4767 2.5 1.0 1.8 2.1 4796 chr2L 12731057 intron MRP + chr2L 12733455 intron MRP + chr2L 12735853 intron MRP + chr2L_6_12730001 chr2L_12730001 RAL-352 148 chr2L 12739173 12739198 chr2L 12743954 12743979 Doc 6 4780 5.0 3.0 4.0 1.2 4806 chr2L 12739173 exon MRP + chr2L 12741576 intron MRP + chr2L 12743979 exon MRP + chr2L_6_12740001 chr2L_12740001 RAL-352 149 chr2L 12747082 12747094 chr2L 12747171 12747183 4 89 20.5 6.0 13.2 0.3 101 chr2L 12747082 intergenic not near genes chr2L 12747132 intergenic not near genes chr2L 12747183 intergenic not near genes chr2L_4_12745001 chr2L_12745001 RAL-352 150 chr2L 12751312 12751331 chr2L 12751395 12751414 5 80 8.5 12.5 10.5 0.4 102 chr2L 12751312 intergenic not near genes chr2L 12751363 intergenic not near genes chr2L 12751414 intergenic not near genes chr2L_5_12750001 chr2L_12750001 RAL-352 151 chr2L 12781795 12781814 chr2L 12789245 12789251 Quasimodo 4 7441 2.0 2.5 2.2 1.2 7456 chr2L 12781795 intergenic not near genes chr2L 12785523 intergenic not near genes chr2L 12789251 intergenic not near genes chr2L_4_12785001 chr2L_12785001 RAL-352 152 chr2L 12791606 12791632 chr2L 12795280 12795307 F-element 8 3674 2.0 0.0 1.0 4.0 3701 chr2L 12791606 intergenic not near genes chr2L 12793456 intergenic not near genes chr2L 12795307 intergenic not near genes chr2L_8_12790001 chr2L_12790001 RAL-352 153 chr2L 12861702 12861723 chr2L 12863169 12863170 hobo 4 1462 10.0 15.5 12.8 0.3 1468 chr2L 12861702 intergenic not near genes chr2L 12862436 intergenic not near genes chr2L 12863170 intergenic not near genes chr2L_4_12860001 chr2L_12860001 RAL-352 154 chr2L 12930130 12930153 chr2L 12930414 12930437 6 284 8.5 3.5 6.0 0.9 307 chr2L 12930130 intergenic ACXE + chr2L 12930284 intergenic ACXE + chr2L 12930437 intergenic not near genes chr2L_6_12930001 chr2L_12930001 RAL-352 155 chr2L 12933853 12933881 chr2L 12941318 12941334 blood 6 7461 2.5 3.5 3.0 1.5 7481 chr2L 12933853 intergenic not near genes chr2L 12937594 intergenic not near genes chr2L 12941334 intergenic not near genes chr2L_6_12935001 chr2L_12935001 RAL-352 156 chr2L 13231888 13231908 chr2L 13231996 13232019 7 111 2.5 3.5 3.0 1.8 131 chr2L 13231888 intergenic Prosalpha6T + chr2L 13231954 intergenic Prosalpha6T + chr2L 13232019 intergenic Prosalpha6T + chr2L_7_13230001 chr2L_13230001 RAL-352 157 chr2L 13241958 13241969 chr2L 13244342 13244353 BS 4 2384 5.0 2.5 3.8 0.8 2395 chr2L 13241958 5` UTR CR45330 + chr2L 13243156 intron CR45330 + chr2L 13244353 5` UTR CR45330 + chr2L_4_13240001 chr2L_13240001 RAL-352 158 chr2L 13266391 13266405 chr2L 13266476 13266493 4 86 8.0 8.0 8.0 0.4 102 chr2L 13266391 intron CG44085 + chr2L 13266442 intron CG44085 + chr2L 13266493 intron CG44085 + chr2L_4_13265001 chr2L_13265001 RAL-352 159 chr2L 13292716 13292749 chr2L 13292798 13292831 5 79 8.5 8.5 8.5 0.5 115 chr2L 13292716 intron CG31729 + chr2L 13292774 intron CG31729 + chr2L 13292831 intron CG31729 + chr2L_5_13290001 chr2L_13290001 RAL-352 160 chr2L 13374334 13374355 chr2L 13374420 13374435 7 84 12.5 8.0 10.2 0.6 101 chr2L 13374334 5` UTR CG6565 + chr2L 13374384 5` UTR CG6565 + chr2L 13374435 5` UTR CG6565 + chr2L_7_13370001 chr2L_13370001 RAL-352 161 chr2L 13405655 13405678 chr2L 13410452 13410474 Doc 8 4794 3.0 2.0 2.5 2.3 4819 chr2L 13405655 exon CG7110 + chr2L 13408064 intron CG7110 + chr2L 13410474 intron CG7110 + chr2L_8_13405001 chr2L_13405001 RAL-352 162 chr2L 13481446 13481479 chr2L 13482052 13482071 jockey 7 602 4.5 4.0 4.2 1.3 625 chr2L 13481446 intron CG42784 + chr2L 13481758 intron CG42784 + chr2L 13482071 intron CG42784 + chr2L_7_13480001 chr2L_13480001 RAL-352 163 chr2L 13607645 13607670 chr2L 13607723 13607745 4 67 2.5 5.5 4.0 0.8 100 chr2L 13607645 intron kuz + chr2L 13607695 intron kuz + chr2L 13607745 intron kuz + chr2L_4_13605001 chr2L_13605001 RAL-352 164 chr2L 13622145 13622226 chr2L 13622243 13622313 7 94 3.5 3.5 3.5 1.6 168 chr2L 13622145 intron kuz + chr2L 13622229 intron kuz + chr2L 13622313 intron kuz + chr2L_7_13620001 chr2L_13620001 RAL-352 165 chr2L 13761289 13761316 chr2L 13761371 13761373 5 72 4.5 7.0 5.8 0.7 84 chr2L 13761289 intron TM9SF4 + chr2L 13761331 intron TM9SF4 + chr2L 13761373 intron TM9SF4 + chr2L_5_13760001 chr2L_13760001 RAL-352 166 chr2L 13761805 13761833 chr2L 13762914 13762944 Doc 8 1108 3.0 2.5 2.8 2.1 1139 chr2L 13761805 intron TM9SF4 + chr2L 13762374 intron TM9SF4 + chr2L 13762944 intron TM9SF4 + chr2L_8_13760001 chr2L_13760001 RAL-352 167 chr2L 13853088 13853106 chr2L 13862237 13862256 roo 5 9150 5.0 1.0 3.0 1.2 9168 chr2L 13853088 intron CenG1A + chr2L 13857672 intron CenG1A + chr2L 13862256 intron CenG1A + chr2L_5_13855001 chr2L_13855001 RAL-352 168 chr2L 13943685 13943707 chr2L 13943968 13943991 5 282 5.5 6.5 6.0 0.7 306 chr2L 13943685 intron Ance-3 + chr2L 13943838 intron Ance-3 + chr2L 13943991 intron Ance-3 + chr2L_5_13940001 chr2L_13940001 RAL-352 169 chr2L 14096159 14096166 chr2L 14096249 14096256 5 88 12.5 6.0 9.2 0.5 97 chr2L 14096159 intergenic not near genes chr2L 14096208 intergenic not near genes chr2L 14096256 intergenic not near genes chr2L_5_14095001 chr2L_14095001 RAL-352 170 chr2L 14268585 14268612 chr2L 14268661 14268689 4 77 4.5 5.0 4.8 0.7 104 chr2L 14268585 intron wb + chr2L 14268637 intron wb + chr2L 14268689 intron wb + chr2L_4_14265001 chr2L_14265001 RAL-352 171 chr2L 14444329 14444341 chr2L 14444405 14444411 5 73 3.5 3.5 3.5 1.1 82 chr2L 14444329 intergenic not near genes chr2L 14444370 intergenic not near genes chr2L 14444411 intergenic not near genes chr2L_5_14440001 chr2L_14440001 RAL-352 172 chr2L 14588387 14588420 chr2L 14588540 14588574 6 147 6.0 5.0 5.5 0.9 187 chr2L 14588387 intergenic CG42680 - chr2L 14588480 intergenic CG42680 - chr2L 14588574 intergenic CG42680 - chr2L_6_14585001 chr2L_14585001 RAL-352 173 chr2L 14628723 14628750 chr2L 14628797 14628826 4 73 10.5 9.5 10.0 0.4 103 chr2L 14628723 intron osp - chr2L 14628774 intron osp - chr2L 14628826 intron osp - chr2L_4_14625001 chr2L_14625001 RAL-352 174 chr2L 14716605 14716615 chr2L 14716683 14716690 6 77 9.0 9.5 9.2 0.6 85 chr2L 14716605 intergenic not near genes chr2L 14716648 intergenic not near genes chr2L 14716690 intergenic not near genes chr2L_6_14715001 chr2L_14715001 RAL-352 175 chr2L 14795599 14795618 chr2L 14796094 14796112 4 494 3.0 1.0 2.0 1.3 513 chr2L 14795599 exon CG18420 - chr2L 14795856 intron CG18420 - chr2L 14796112 intron CG18420 - chr2L_4_14795001 chr2L_14795001 RAL-352 176 chr2L 14803886 14803904 chr2L 14809081 14809104 copia 5 5198 4.5 4.0 4.2 1.0 5218 chr2L 14803886 intergenic not near genes chr2L 14806495 intergenic not near genes chr2L 14809104 intergenic not near genes chr2L_5_14805001 chr2L_14805001 RAL-352 177 chr2L 14839752 14839764 chr2L 14839828 14839839 4 76 1.0 2.0 1.5 1.6 87 chr2L 14839752 intergenic not near genes chr2L 14839796 intergenic not near genes chr2L 14839839 intergenic not near genes chr2L_4_14835001 chr2L_14835001 RAL-352 178 chr2L 14840979 14841001 chr2L 14841063 14841072 5 82 0.5 4.5 2.5 1.4 93 chr2L 14840979 3` UTR CR43805 - chr2L 14841026 3` UTR CR43805 - chr2L 14841072 3` UTR CR43805 - chr2L_5_14840001 chr2L_14840001 RAL-352 179 chr2L 14888929 14888957 chr2L 14889013 14889034 6 82 11.5 15.5 13.5 0.4 105 chr2L 14888929 intergenic not near genes chr2L 14888982 intergenic not near genes chr2L 14889034 intergenic not near genes chr2L_6_14885001 chr2L_14885001 RAL-352 180 chr2L 14923104 14923126 chr2L 14923184 14923196 5 77 6.5 3.0 4.8 0.9 92 chr2L 14923104 intron CG42313 - chr2L 14923150 intron CG42313 - chr2L 14923196 intron CG42313 - chr2L_5_14920001 chr2L_14920001 RAL-352 181 chr2L 15044708 15044729 chr2L 15044784 15044805 4 72 1.0 0.0 0.5 2.7 97 chr2L 15044708 intergenic ck - chr2L 15044756 intergenic ck - chr2L 15044805 intergenic ck - chr2L_4_15040001 chr2L_15040001 RAL-352 182 chr2L 15135279 15135290 chr2L 15135348 15135381 5 84 13.5 11.0 12.2 0.4 102 chr2L 15135279 intergenic not near genes chr2L 15135330 intergenic not near genes chr2L 15135381 intergenic not near genes chr2L_5_15135001 chr2L_15135001 RAL-352 183 chr2L 15226369 15226392 chr2L 15226443 15226466 4 74 1.0 1.5 1.2 1.8 97 chr2L 15226369 intergenic not near genes chr2L 15226418 intergenic not near genes chr2L 15226466 intergenic not near genes chr2L_4_15225001 chr2L_15225001 RAL-352 184 chr2L 15446065 15446080 chr2L 15453531 15453549 blood 4 7466 2.5 1.5 2.0 1.3 7484 chr2L 15446065 intergenic not near genes chr2L 15449807 intergenic not near genes chr2L 15453549 intergenic not near genes chr2L_4_15445001 chr2L_15445001 RAL-352 185 chr2L 15956024 15956053 chr2L 15957490 15957502 hobo 7 1464 2.5 1.5 2.0 2.3 1478 chr2L 15956024 intron beat-Ib - chr2L 15956763 intron beat-Ib - chr2L 15957502 intron beat-Ib - chr2L_7_15955001 chr2L_15955001 RAL-352 186 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 10 145889 15.0 16.0 15.5 0.6 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_10_16140001 chr2L_16140001 RAL-352 187 chr2L 16141170 16141187 chr2L 16146377 16146394 copia 7 5207 2.5 3.0 2.8 1.8 5224 chr2L 16141170 intergenic not near genes chr2L 16143782 intergenic not near genes chr2L 16146394 intergenic not near genes chr2L_7_16140001 chr2L_16140001 RAL-352 188 chr2L 9084337 9084340 chr2L 16217660 16217660 15 7133321 16.0 16.0 16.0 0.9 7133323 chr2L 9084337 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_15_12650001 chr2L_12650001 RAL-352 189 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 5 145889 15.0 16.0 15.5 0.3 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_5_16140001 chr2L_16140001 RAL-352 190 chr2L 16280254 16280288 chr2L 16281420 16281435 1360 10 1159 5.0 4.0 4.5 1.8 1181 chr2L 16280254 intron crp - chr2L 16280844 intron crp - chr2L 16281435 intron crp - chr2L_10_16280001 chr2L_16280001 RAL-352 191 chr2L 16443987 16444013 chr2L 16444064 16444088 5 76 5.5 6.0 5.8 0.7 101 chr2L 16443987 intron CG5888 - chr2L 16444038 intron CG5888 - chr2L 16444088 intron CG5888 - chr2L_5_16440001 chr2L_16440001 RAL-352 192 chr2L 16469522 16469541 chr2L 16469598 16469616 5 75 9.0 9.5 9.2 0.5 94 chr2L 16469522 intron dac - chr2L 16469569 intron dac - chr2L 16469616 intron dac - chr2L_5_16465001 chr2L_16465001 RAL-352 193 chr2L 16504993 16505014 chr2L 16505100 16505122 4 106 2.0 3.0 2.5 1.1 129 chr2L 16504993 intron Tpr2 + chr2L 16505058 intron Tpr2 + chr2L 16505122 intron Tpr2 + chr2L_4_16505001 chr2L_16505001 RAL-352 194 chr2L 16958106 16958135 chr2L 16962894 16962923 Doc 6 4788 1.5 1.5 1.5 2.4 4817 chr2L 16958106 intergenic not near genes chr2L 16960514 intergenic not near genes chr2L 16962923 intergenic not near genes chr2L_6_16960001 chr2L_16960001 RAL-352 195 chr2L 17122782 17122806 chr2L 17122866 17122869 6 76 5.0 7.0 6.0 0.9 87 chr2L 17122782 intergenic not near genes chr2L 17122826 intergenic CG31784 - chr2L 17122869 intergenic CG31784 - chr2L_6_17120001 chr2L_17120001 RAL-352 196 chr2L 17158731 17158742 chr2L 17158833 17158844 4 102 6.5 1.5 4.0 0.8 113 chr2L 17158731 5` UTR,exon CG34106 +,beat-IIIa + chr2L 17158788 intron,intron CG34106 +,beat-IIIa + chr2L 17158844 intron,intron CG34106 +,beat-IIIa + chr2L_4_17155001 chr2L_17155001 RAL-352 197 chr2L 17273190 17273224 chr2L 17277973 17278006 F-element 7 4777 2.0 4.5 3.2 1.7 4816 chr2L 17273190 intergenic not near genes chr2L 17275598 intergenic not near genes chr2L 17278006 intergenic not near genes chr2L_7_17275001 chr2L_17275001 RAL-352 198 chr2L 17303441 17303464 chr2L 17303614 17303628 5 173 11.0 9.0 10.0 0.5 187 chr2L 17303441 intergenic not near genes chr2L 17303534 intergenic not near genes chr2L 17303628 intergenic not near genes chr2L_5_17300001 chr2L_17300001 RAL-352 199 chr2L 17360028 17360144 chr2L 17360206 17360221 5 157 0.5 0.0 0.2 4.2 193 chr2L 17360028 intergenic not near genes chr2L 17360124 intergenic not near genes chr2L 17360221 intergenic not near genes chr2L_5_17360001 chr2L_17360001 RAL-352 200 chr2L 17819921 17819950 chr2L 17825124 17825153 copia 4 5199 1.0 5.0 3.0 1.0 5232 chr2L 17819921 intron CadN2 - chr2L 17822537 intron CadN2 - chr2L 17825153 intron CadN2 - chr2L_4_17820001 chr2L_17820001 RAL-352 201 chr2L 17879997 17880024 chr2L 17880084 17880107 10 84 9.5 7.5 8.5 1.1 110 chr2L 17879997 intergenic not near genes chr2L 17880052 intergenic not near genes chr2L 17880107 intergenic not near genes chr2L_10_17880001 chr2L_17880001 RAL-352 202 chr2L 17951952 17951972 chr2L 17953410 17953433 hobo 4 1463 0.5 1.5 1.0 2.0 1481 chr2L 17951952 intergenic CR44398 -,CR44397 - chr2L 17952692 intergenic not near genes chr2L 17953433 intergenic not near genes chr2L_4_17950001 chr2L_17950001 RAL-352 203 chr2L 18051875 18051907 chr2L 18061021 18061041 roo 11 9143 1.0 1.0 1.0 5.5 9166 chr2L 18051875 intron rdo + chr2L 18056458 intron rdo + chr2L 18061041 intron rdo + chr2L_11_18055001 chr2L_18055001 RAL-352 204 chr2L 18073441 18073450 chr2L 18073553 18073564 4 114 4.0 8.5 6.2 0.6 123 chr2L 18073441 intergenic not near genes chr2L 18073502 intergenic not near genes chr2L 18073564 intergenic not near genes chr2L_4_18070001 chr2L_18070001 RAL-352 205 chr2L 18111261 18111270 chr2L 18111338 18111338 4 78 6.0 6.5 6.2 0.6 77 chr2L 18111261 intergenic not near genes chr2L 18111300 intergenic not near genes chr2L 18111338 intergenic not near genes chr2L_4_18110001 chr2L_18110001 RAL-352 206 chr2L 18239947 18239965 chr2L 18240178 18240193 4 230 2.5 9.5 6.0 0.6 246 chr2L 18239947 intron CG42750 - chr2L 18240070 intron CG42750 - chr2L 18240193 intron CG42750 - chr2L_4_18240001 chr2L_18240001 RAL-352 207 chr2L 18274048 18274070 chr2L 18274134 18274156 11 83 2.0 3.0 2.5 3.1 108 chr2L 18274048 intron CG42750 - chr2L 18274102 intron CG42750 - chr2L 18274156 intron CG42750 - chr2L_11_18270001 chr2L_18270001 RAL-352 208 chr2L 18402199 18402230 chr2L 18402290 18402314 5 88 7.5 6.0 6.8 0.6 115 chr2L 18402199 intergenic not near genes chr2L 18402256 intergenic not near genes chr2L 18402314 intergenic not near genes chr2L_5_18400001 chr2L_18400001 RAL-352 209 chr2L 18561572 18561593 chr2L 18561663 18561676 6 86 2.5 0.0 1.2 2.7 104 chr2L 18561572 intron Pde11 - chr2L 18561624 intron Pde11 - chr2L 18561676 intron Pde11 - chr2L_6_18560001 chr2L_18560001 RAL-352 210 chr2L 18812567 18812590 chr2L 18812824 18812853 10 261 1.5 4.5 3.0 2.5 286 chr2L 18812567 intergenic CG17325 +,CG42305 + chr2L 18812710 5` UTR,5` UTR CG17325 +,CG42305 + chr2L 18812853 5` UTR,5` UTR CG17325 +,CG42305 + chr2L_10_18810001 chr2L_18810001 RAL-352 211 chr2L 18848496 18848529 chr2L 18848648 18848655 6 143 5.5 10.5 8.0 0.7 159 chr2L 18848496 intron CG17321 + chr2L 18848576 intron CG17321 + chr2L 18848655 intron CG17321 + chr2L_6_18845001 chr2L_18845001 RAL-352 212 chr2L 18883857 18883884 chr2L 18883936 18883966 4 81 7.0 9.0 8.0 0.4 109 chr2L 18883857 intergenic not near genes chr2L 18883912 intergenic not near genes chr2L 18883966 intergenic not near genes chr2L_4_18880001 chr2L_18880001 RAL-352 213 chr2L 19070272 19070300 chr2L 19070365 19070365 7 81 7.0 8.5 7.8 0.8 93 chr2L 19070272 intergenic CG10702 - chr2L 19070318 intergenic CG10702 - chr2L 19070365 intergenic not near genes chr2L_7_19070001 chr2L_19070001 RAL-352 214 chr2L 19102355 19102375 chr2L 19102431 19102451 4 75 16.0 18.5 17.2 0.2 96 chr2L 19102355 intron,5` UTR,3` UTR Lim3 -,CG17344 +,CG43731 + chr2L 19102403 intron,exon,3` UTR Lim3 -,CG17344 +,CG43731 + chr2L 19102451 intron,exon,3` UTR Lim3 -,CG17344 +,CG43731 + chr2L_4_19100001 chr2L_19100001 RAL-352 215 chr2L 19147373 19147401 chr2L 19154408 19154435 297 10 7035 1.5 2.0 1.8 3.6 7062 chr2L 19147373 intron brat + chr2L 19150904 intron brat + chr2L 19154435 intron brat + chr2L_10_19150001 chr2L_19150001 RAL-352 216 chr2L 19163239 19163270 chr2L 19163327 19163358 7 85 9.0 12.0 10.5 0.6 119 chr2L 19163239 intron brat + chr2L 19163298 intron brat + chr2L 19163358 intron brat + chr2L_7_19160001 chr2L_19160001 RAL-352 217 chr2L 19237312 19237335 chr2L 19237411 19237433 5 99 5.0 12.5 8.8 0.5 121 chr2L 19237312 intergenic not near genes chr2L 19237372 intergenic not near genes chr2L 19237433 intergenic not near genes chr2L_5_19235001 chr2L_19235001 RAL-352 218 chr2L 19268896 19268909 chr2L 19268982 19268995 4 85 14.5 8.5 11.5 0.3 99 chr2L 19268896 intergenic CR44190 - chr2L 19268946 intergenic CR44190 - chr2L 19268995 intergenic CR44190 - chr2L_4_19265001 chr2L_19265001 RAL-352 219 chr2L 19345018 19345046 chr2L 19357227 19357255 blood 7 12208 3.5 4.5 4.0 1.4 12237 chr2L 19345018 intron dnt - chr2L 19351136 intron dnt - chr2L 19357255 intron dnt - chr2L_7_19350001 chr2L_19350001 RAL-352 220 chr2L 19357554 19357566 chr2L 19357635 19357656 8 87 4.5 3.5 4.0 1.6 102 chr2L 19357554 intron dnt - chr2L 19357605 intron dnt - chr2L 19357656 intron dnt - chr2L_8_19355001 chr2L_19355001 RAL-352 221 chr2L 19361877 19361909 chr2L 19361963 19361996 12 84 4.0 3.5 3.8 2.5 119 chr2L 19361877 intron dnt - chr2L 19361936 intron dnt - chr2L 19361996 intron dnt - chr2L_12_19360001 chr2L_19360001 RAL-352 222 chr2L 19374507 19374519 chr2L 19374615 19374628 5 109 0.0 2.0 1.0 2.5 121 chr2L 19374507 intergenic not near genes chr2L 19374568 intergenic not near genes chr2L 19374628 intergenic not near genes chr2L_5_19370001 chr2L_19370001 RAL-352 223 chr2L 19560005 19560036 chr2L 19560258 19560285 4 251 9.5 16.0 12.8 0.3 280 chr2L 19560005 exon Tep5 + chr2L 19560145 exon Tep5 + chr2L 19560285 intron Tep5 + chr2L_4_19560001 chr2L_19560001 RAL-352 224 chr2L 19562546 19562559 chr2L 19562608 19562639 5 75 7.0 8.5 7.8 0.6 93 chr2L 19562546 intron Tep5 + chr2L 19562592 intron Tep5 + chr2L 19562639 exon Tep5 + chr2L_5_19560001 chr2L_19560001 RAL-352 225 chr2L 19620096 19620131 chr2L 19621085 19621119 jockey 14 982 5.0 8.0 6.5 1.9 1023 chr2L 19620096 intron Lar + chr2L 19620608 intron Lar + chr2L 19621119 intron Lar + chr2L_14_19620001 chr2L_19620001 RAL-352 226 chr2L 19652571 19652584 chr2L 19674005 19674020 opus 4 21435 8.5 1.0 4.8 0.7 21449 chr2L 19652571 intron Lar + chr2L 19663296 intron Lar + chr2L 19674020 intron Lar + chr2L_4_19660001 chr2L_19660001 RAL-352 227 chr2L 19703538 19703562 chr2L 19712673 19712693 roo 11 9132 4.5 0.5 2.5 3.1 9155 chr2L 19703538 intron Lar + chr2L 19708116 intron Lar + chr2L 19712693 intron Lar + chr2L_11_19705001 chr2L_19705001 RAL-352 228 chr2L 19737362 19737389 chr2L 19740830 19740855 1360 8 3463 8.5 13.0 10.8 0.7 3493 chr2L 19737362 intergenic Nf-YB + chr2L 19739108 intergenic not near genes chr2L 19740855 intergenic not near genes chr2L_8_19735001 chr2L_19735001 RAL-352 229 chr2L 19762810 19762838 chr2L 19763052 19763080 pogo 4 238 2.0 2.5 2.2 1.2 270 chr2L 19762810 5` UTR fbp - chr2L 19762945 intron fbp - chr2L 19763080 intron fbp - chr2L_4_19760001 chr2L_19760001 RAL-352 230 chr2L 19837287 19837303 chr2L 19837366 19837383 6 79 16.0 13.0 14.5 0.4 96 chr2L 19837287 intron sick + chr2L 19837335 intron sick + chr2L 19837383 intron sick + chr2L_6_19835001 chr2L_19835001 RAL-352 231 chr2L 19848523 19848552 chr2L 19848633 19848648 8 107 11.0 19.0 15.0 0.5 125 chr2L 19848523 intron sick + chr2L 19848586 intron sick + chr2L 19848648 intron sick + chr2L_8_19845001 chr2L_19845001 RAL-352 232 chr2L 19899165 19899182 chr2L 19899241 19899264 4 80 3.0 3.0 3.0 1.0 99 chr2L 19899165 intron sick + chr2L 19899214 intron sick + chr2L 19899264 intron sick + chr2L_4_19895001 chr2L_19895001 RAL-352 233 chr2L 19911290 19911324 chr2L 19911377 19911410 6 82 13.5 13.0 13.2 0.4 120 chr2L 19911290 intron,3` UTR sick +,CR43097 - chr2L 19911350 intron,3` UTR sick +,CR43097 - chr2L 19911410 intron,3` UTR sick +,CR43097 - chr2L_6_19910001 chr2L_19910001 RAL-352 234 chr2L 19964831 19964866 chr2L 19964916 19964936 4 82 10.5 10.5 10.5 0.3 105 chr2L 19964831 intron CG10680 + chr2L 19964884 exon CG10680 + chr2L 19964936 exon CG10680 + chr2L_4_19960001 chr2L_19960001 RAL-352 235 chr2L 19980697 19980719 chr2L 19980777 19980788 6 78 13.0 12.0 12.5 0.4 91 chr2L 19980697 intron CG43861 - chr2L 19980742 intron CG43861 - chr2L 19980788 intron CG43861 - chr2L_6_19980001 chr2L_19980001 RAL-352 236 chr2L 20085472 20085491 chr2L 20085564 20085568 5 89 10.5 10.5 10.5 0.4 96 chr2L 20085472 intron neb + chr2L 20085520 intron neb + chr2L 20085568 intron neb + chr2L_5_20085001 chr2L_20085001 RAL-352 237 chr2L 20272120 20272144 chr2L 20282822 20282855 copia 5 10709 1.5 2.5 2.0 1.7 10735 chr2L 20272120 intergenic not near genes chr2L 20277488 intergenic not near genes chr2L 20282855 intergenic not near genes chr2L_5_20275001 chr2L_20275001 RAL-352 238 chr2L 20424063 20424074 chr2L 20424146 20424149 4 82 9.5 15.0 12.2 0.3 86 chr2L 20424063 intron CG15130 - chr2L 20424106 intron CG15130 - chr2L 20424149 intron CG15130 - chr2L_4_20420001 chr2L_20420001 RAL-352 239 chr2L 20468379 20468400 chr2L 20468483 20468498 INE-1 4 102 6.0 4.5 5.2 0.6 119 chr2L 20468379 intron CR44980 - chr2L 20468438 intron CR44980 - chr2L 20468498 intron CR44980 - chr2L_4_20465001 chr2L_20465001 RAL-352 240 chr2L 20498689 20498705 chr2L 20498787 20498804 4 97 4.0 5.5 4.8 0.7 115 chr2L 20498689 intergenic not near genes chr2L 20498746 intergenic not near genes chr2L 20498804 intergenic not near genes chr2L_4_20495001 chr2L_20495001 RAL-352 241 chr2L 20576219 20576246 chr2L 20583687 20583715 blood 10 7468 5.0 3.0 4.0 2.0 7496 chr2L 20576219 intergenic CR45347 + chr2L 20579967 intergenic not near genes chr2L 20583715 3` UTR CR44909 - chr2L_10_20575001 chr2L_20575001 RAL-352 242 chr2L 20611236 20611266 chr2L 20611320 20611345 5 84 4.0 6.5 5.2 0.8 109 chr2L 20611236 intron CR44909 - chr2L 20611290 intron CR44909 - chr2L 20611345 intron CR44909 - chr2L_5_20610001 chr2L_20610001 RAL-352 243 chr2L 20840024 20840055 chr2L 20840236 20840267 4 212 12.0 2.5 7.2 0.5 243 chr2L 20840024 intergenic not near genes chr2L 20840146 intergenic not near genes chr2L 20840267 intergenic CG31676 + chr2L_4_20840001 chr2L_20840001 RAL-352 244 chr2L 20852419 20852439 chr2L 20852496 20852521 4 82 8.0 9.5 8.8 0.4 102 chr2L 20852419 intergenic twit + chr2L 20852470 intergenic twit + chr2L 20852521 intergenic twit + chr2L_4_20850001 chr2L_20850001 RAL-352 245 chr2L 21020273 21020310 chr2L 21023948 21023984 NOF 9 3674 2.0 3.0 2.5 2.6 3711 chr2L 21020273 intron CG42238 - chr2L 21022128 intron CG42238 - chr2L 21023984 intron CG42238 - chr2L_9_21020001 chr2L_21020001 RAL-352 246 chr2L 21041137 21041167 chr2L 21049398 21049428 Tirant 4 8260 0.5 3.5 2.0 1.3 8291 chr2L 21041137 intron CG42238 - chr2L 21045282 intron CG42238 - chr2L 21049428 intron CG42238 - chr2L_4_21045001 chr2L_21045001 RAL-352 247 chr2L 21074939 21074949 chr2L 21075030 21075037 4 90 1.5 3.5 2.5 1.1 98 chr2L 21074939 intergenic tadr + chr2L 21074988 intergenic tadr + chr2L 21075037 intergenic tadr + chr2L_4_21070001 chr2L_21070001 RAL-352 248 chr2L 21199239 21199260 chr2L 21199316 21199337 8 76 10.0 11.5 10.8 0.7 98 chr2L 21199239 3` UTR CG31624 - chr2L 21199288 3` UTR CG31624 - chr2L 21199337 3` UTR CG31624 - chr2L_8_21195001 chr2L_21195001 RAL-352 249 chr2L 21245286 21245298 chr2L 21245521 21245533 6 235 9.5 10.0 9.8 0.6 247 chr2L 21245286 intron Hr39 + chr2L 21245410 intron Hr39 + chr2L 21245533 intron Hr39 + chr2L_6_21245001 chr2L_21245001 RAL-352 250 chr2L 21246515 21246529 chr2L 21246609 21246615 4 92 18.0 20.5 19.2 0.2 100 chr2L 21246515 intron Hr39 + chr2L 21246565 intron Hr39 + chr2L 21246615 intron Hr39 + chr2L_4_21245001 chr2L_21245001 RAL-352 251 chr2L 21286609 21286613 chr2L 21286687 21286690 4 78 3.5 1.5 2.5 1.1 81 chr2L 21286609 exon Mio - chr2L 21286650 intron Mio - chr2L 21286690 intron Mio - chr2L_4_21285001 chr2L_21285001 RAL-352 252 chr2L 21755496 21755518 chr2L 21755620 21755623 5 118 1.5 2.5 2.0 1.7 127 chr2L 21755496 intron step - chr2L 21755560 intron step - chr2L 21755623 intron step - chr2L_5_21755001 chr2L_21755001 RAL-352 253 chr2L 21981687 21981707 chr2L 21990850 21990872 roo 10 9164 4.0 5.0 4.5 1.8 9185 chr2L 21981687 exon CG2528 - chr2L 21986280 intron CG2528 - chr2L 21990872 exon CG2528 - chr2L_10_21985001 chr2L_21985001 RAL-352 254 chr2R 529330 529356 chr2R 537955 537981 Max-element 7 8620 2.5 3.0 2.8 1.8 8651 chr2R 529330 intron CG40378 + chr2R 533656 intron CG40378 + chr2R 537981 intron CG40378 + chr2R_7_530001 chr2R_530001 RAL-352 255 chr2R 1082373 1082384 chr2R 1087126 1087160 Doc 8 4766 7.0 1.5 4.2 1.5 4787 chr2R 1082373 intron rl + chr2R 1084766 intron rl + chr2R 1087160 intron rl + chr2R_8_1080001 chr2R_1080001 RAL-352 256 chr2R 2508318 2508334 chr2R 2508454 2508469 7 135 4.5 7.0 5.8 1.0 151 chr2R 2508318 intron MFS17 - chr2R 2508394 intron MFS17 - chr2R 2508469 intron MFS17 - chr2R_7_2505001 chr2R_2505001 RAL-352 257 chr2R 2950449 2950464 chr2R 2950560 2950561 4 106 7.5 12.0 9.8 0.4 112 chr2R 2950449 intron Scp1 - chr2R 2950505 intron Scp1 - chr2R 2950561 intron Scp1 - chr2R_4_2950001 chr2R_2950001 RAL-352 258 chr2R 3089479 3089500 chr2R 3089653 3089654 4 172 4.0 4.0 4.0 0.8 175 chr2R 3089479 intron CG42596 + chr2R 3089566 intron CG42596 + chr2R 3089654 intron CG42596 + chr2R_4_3085001 chr2R_3085001 RAL-352 259 chr2R 3144097 3144109 chr2R 3393366 3393378 Doc 6 249274 10.0 5.0 7.5 0.7 249281 chr2R 3144097 intron CG42596 + chr2R 3268738 intergenic not near genes chr2R 3393378 intergenic not near genes chr2R_6_3265001 chr2R_3265001 RAL-352 260 chr2R 3293748 3293772 chr2R 3293826 3293850 4 74 0.5 0.5 0.5 2.7 102 chr2R 3293748 intergenic not near genes chr2R 3293799 intergenic not near genes chr2R 3293850 intergenic not near genes chr2R_4_3290001 chr2R_3290001 RAL-352 261 chr2R 3399232 3399258 chr2R 3399314 3399340 4 84 9.0 12.0 10.5 0.3 108 chr2R 3399232 intergenic not near genes chr2R 3399286 intergenic not near genes chr2R 3399340 intergenic not near genes chr2R_4_3395001 chr2R_3395001 RAL-352 262 chr2R 4161476 4161496 chr2R 4161549 4161571 6 70 8.5 10.5 9.5 0.6 95 chr2R 4161476 intergenic not near genes chr2R 4161524 intergenic not near genes chr2R 4161571 intergenic not near genes chr2R_6_4160001 chr2R_4160001 RAL-352 263 chr2R 4622957 4622988 chr2R 4624111 4624147 1360 9 1156 9.0 9.5 9.2 0.9 1190 chr2R 4622957 intergenic CR44101 - chr2R 4623552 intergenic not near genes chr2R 4624147 intergenic not near genes chr2R_9_4620001 chr2R_4620001 RAL-352 264 chr2R 4624651 4624669 chr2R 4626545 4626572 Bica 6 1902 10.0 9.0 9.5 0.6 1921 chr2R 4624651 intergenic not near genes chr2R 4625612 intergenic not near genes chr2R 4626572 intergenic not near genes chr2R_6_4625001 chr2R_4625001 RAL-352 265 chr2R 4942068 4942080 chr2R 4942193 4942205 5 124 1.5 1.5 1.5 2.0 137 chr2R 4942068 intron Ir41a + chr2R 4942136 intron Ir41a + chr2R 4942205 intron Ir41a + chr2R_5_4940001 chr2R_4940001 RAL-352 266 chr2R 5019275 5019312 chr2R 5019361 5019386 5 83 4.5 4.0 4.2 1.0 111 chr2R 5019275 intron Ir41a + chr2R 5019330 intron Ir41a + chr2R 5019386 intron Ir41a + chr2R_5_5015001 chr2R_5015001 RAL-352 267 chr2R 5237348 5237371 chr2R 5237430 5237451 4 82 0.0 0.5 0.2 3.3 103 chr2R 5237348 intron Nipped-A - chr2R 5237400 intron Nipped-A - chr2R 5237451 intron Nipped-A - chr2R_4_5235001 chr2R_5235001 RAL-352 268 chr2R 5256772 5256787 chr2R 5256853 5256875 8 87 9.0 8.5 8.8 0.8 103 chr2R 5256772 intergenic not near genes chr2R 5256824 intergenic not near genes chr2R 5256875 intergenic not near genes chr2R_8_5255001 chr2R_5255001 RAL-352 269 chr2R 5266120 5266152 chr2R 5266203 5266235 12 80 19.5 23.5 21.5 0.5 115 chr2R 5266120 intron d4 + chr2R 5266178 intron d4 + chr2R 5266235 intron d4 + chr2R_12_5265001 chr2R_5265001 RAL-352 270 chr2R 5421530 5421554 chr2R 5421612 5421636 9 85 23.0 24.0 23.5 0.4 106 chr2R 5421530 intron laccase2 + chr2R 5421583 intron laccase2 + chr2R 5421636 intron laccase2 + chr2R_9_5420001 chr2R_5420001 RAL-352 271 chr2R 5491670 5491694 chr2R 5491757 5491780 7 91 1.5 2.5 2.0 2.3 110 chr2R 5491670 intron CG30440 - chr2R 5491725 intron CG30440 - chr2R 5491780 intron CG30440 - chr2R_7_5490001 chr2R_5490001 RAL-352 272 chr2R 5611810 5611832 chr2R 5611903 5611925 6 96 1.0 3.0 2.0 2.0 115 chr2R 5611810 intergenic CG17508 + chr2R 5611868 intergenic CG17508 + chr2R 5611925 intergenic CG17508 + chr2R_6_5610001 chr2R_5610001 RAL-352 273 chr2R 5655798 5655824 chr2R 5655878 5655907 5 84 4.5 2.5 3.5 1.1 109 chr2R 5655798 exon CG1344 + chr2R 5655852 3` UTR CG1344 + chr2R 5655907 3` UTR CG1344 + chr2R_5_5655001 chr2R_5655001 RAL-352 274 chr2R 5701753 5701778 chr2R 5701833 5701858 4 80 4.5 1.5 3.0 1.0 105 chr2R 5701753 intergenic vlc + chr2R 5701806 intergenic vlc + chr2R 5701858 intergenic vlc + chr2R_4_5700001 chr2R_5700001 RAL-352 275 chr2R 5606785 5606817 chr2R 5736773 5736805 4 129991 13.0 17.0 15.0 0.2 130020 chr2R 5606785 intergenic not near genes chr2R 5671795 5` UTR kune + chr2R 5736805 intergenic not near genes chr2R_4_5670001 chr2R_5670001 RAL-352 276 chr2R 5772524 5772547 chr2R 5772601 5772612 6 76 3.0 3.5 3.2 1.4 88 chr2R 5772524 3` UTR Gp210 + chr2R 5772568 3` UTR Gp210 + chr2R 5772612 3` UTR Gp210 + chr2R_6_5770001 chr2R_5770001 RAL-352 277 chr2R 5869274 5869304 chr2R 5874350 5874360 flea 6 5072 2.0 0.0 1.0 3.0 5086 chr2R 5869274 intergenic not near genes chr2R 5871817 intergenic not near genes chr2R 5874360 intergenic not near genes chr2R_6_5870001 chr2R_5870001 RAL-352 278 chr2R 5876888 5876905 chr2R 5876981 5877002 7 100 8.0 10.5 9.2 0.7 114 chr2R 5876888 intergenic not near genes chr2R 5876945 intergenic not near genes chr2R 5877002 intergenic not near genes chr2R_7_5875001 chr2R_5875001 RAL-352 279 chr2R 5947938 5947966 chr2R 5948089 5948104 8 148 4.5 5.5 5.0 1.3 166 chr2R 5947938 intergenic not near genes chr2R 5948021 intergenic not near genes chr2R 5948104 intergenic not near genes chr2R_8_5945001 chr2R_5945001 RAL-352 280 chr2R 6096737 6096751 chr2R 6101917 6101944 BS 6 5190 5.0 3.0 4.0 1.2 5207 chr2R 6096737 intron EcR - chr2R 6099340 intron EcR - chr2R 6101944 intron EcR - chr2R_6_6095001 chr2R_6095001 RAL-352 281 chr2R 6494537 6494553 chr2R 6499292 6499315 F-element 4 4760 2.5 2.0 2.2 1.2 4778 chr2R 6494537 intergenic not near genes chr2R 6496926 intergenic not near genes chr2R 6499315 intergenic not near genes chr2R_4_6495001 chr2R_6495001 RAL-352 282 chr2R 6608787 6608803 chr2R 6611252 6611265 6 2460 16.0 30.0 23.0 0.2 2478 chr2R 6608787 intron jing + chr2R 6610026 intron jing + chr2R 6611265 intron jing + chr2R_6_6610001 chr2R_6610001 RAL-352 283 chr2R 6673173 6673186 chr2R 6673308 6673329 6 143 11.5 13.5 12.5 0.4 156 chr2R 6673173 5` UTR Hsepi - chr2R 6673251 5` UTR Hsepi - chr2R 6673329 5` UTR Hsepi - chr2R_6_6670001 chr2R_6670001 RAL-352 284 chr2R 6921662 6921682 chr2R 6921756 6921776 5 93 18.5 11.5 15.0 0.3 114 chr2R 6921662 3` UTR CG30158 + chr2R 6921719 3` UTR CG30158 + chr2R 6921776 3` UTR CG30158 + chr2R_5_6920001 chr2R_6920001 RAL-352 285 chr2R 7025898 7025921 chr2R 7025987 7026006 4 88 10.5 11.0 10.8 0.3 108 chr2R 7025898 intron Tsp42Ef + chr2R 7025952 intron Tsp42Ef + chr2R 7026006 intron Tsp42Ef + chr2R_4_7025001 chr2R_7025001 RAL-352 286 chr2R 7139950 7139956 chr2R 7141416 7141448 hopper2 6 1479 2.5 4.0 3.2 1.4 1498 chr2R 7139950 intergenic not near genes chr2R 7140699 intergenic not near genes chr2R 7141448 intergenic not near genes chr2R_6_7140001 chr2R_7140001 RAL-352 287 chr2R 7164277 7164288 chr2R 7164468 7164479 4 190 1.0 9.5 5.2 0.6 202 chr2R 7164277 intron pk + chr2R 7164378 intron pk + chr2R 7164479 intron pk + chr2R_4_7160001 chr2R_7160001 RAL-352 288 chr2R 7235820 7235850 chr2R 7240910 7240918 jockey 12 5086 3.5 3.5 3.5 2.7 5098 chr2R 7235820 intergenic not near genes chr2R 7238369 intergenic not near genes chr2R 7240918 intergenic not near genes chr2R_12_7235001 chr2R_7235001 RAL-352 289 chr2R 7310762 7310789 chr2R 7310844 7310864 8 79 10.0 10.0 10.0 0.7 102 chr2R 7310762 intergenic not near genes chr2R 7310813 intergenic not near genes chr2R 7310864 intergenic not near genes chr2R_8_7310001 chr2R_7310001 RAL-352 290 chr2R 7434893 7434917 chr2R 7439193 7439218 Juan 4 4301 0.5 3.5 2.0 1.3 4325 chr2R 7434893 intergenic so + chr2R 7437056 intergenic not near genes chr2R 7439218 intergenic not near genes chr2R_4_7435001 chr2R_7435001 RAL-352 291 chr2R 7643240 7643267 chr2R 7643326 7643342 5 82 8.5 9.0 8.8 0.5 102 chr2R 7643240 intron CG43340 + chr2R 7643291 intron CG43340 + chr2R 7643342 intron CG43340 + chr2R_5_7640001 chr2R_7640001 RAL-352 292 chr2R 7760286 7760307 chr2R 7760421 7760442 10 132 1.0 7.5 4.2 1.9 156 chr2R 7760286 intron,intron CG30497 -,CG45093 - chr2R 7760364 intron,intron CG30497 -,CG45093 - chr2R 7760442 intron,intron CG30497 -,CG45093 - chr2R_10_7760001 chr2R_7760001 RAL-352 293 chr2R 7815687 7815698 chr2R 7822142 7822167 Burdock 4 6465 3.5 2.5 3.0 1.0 6480 chr2R 7815687 intergenic CG1882 + chr2R 7818927 intergenic not near genes chr2R 7822167 3` UTR cathD - chr2R_4_7815001 chr2R_7815001 RAL-352 294 chr2R 7869186 7869222 chr2R 7873972 7873976 Doc 5 4777 3.5 5.5 4.5 0.9 4790 chr2R 7869186 intron Dgk - chr2R 7871581 intron Dgk - chr2R 7873976 intron Dgk - chr2R_5_7870001 chr2R_7870001 RAL-352 295 chr2R 8015663 8015684 chr2R 8017678 8017697 6 2015 0.5 9.5 5.0 1.0 2034 chr2R 8015663 intergenic mir-4981 + chr2R 8016680 intergenic not near genes chr2R 8017697 intergenic not near genes chr2R_6_8015001 chr2R_8015001 RAL-352 296 chr2R 8330861 8330887 chr2R 8331347 8331373 roo 9 484 4.5 2.5 3.5 2.0 512 chr2R 8330861 intron pdm3 + chr2R 8331117 intron pdm3 + chr2R 8331373 intron pdm3 + chr2R_9_8330001 chr2R_8330001 RAL-352 297 chr2R 8379795 8379812 chr2R 8379885 8379908 4 94 12.0 8.5 10.2 0.4 113 chr2R 8379795 intron pdm3 + chr2R 8379852 intron pdm3 + chr2R 8379908 intron pdm3 + chr2R_4_8375001 chr2R_8375001 RAL-352 298 chr2R 8398218 8398244 chr2R 8402999 8403025 Doc 7 4780 2.0 4.0 3.0 1.8 4807 chr2R 8398218 intron CG2121 - chr2R 8400622 intron CG2121 - chr2R 8403025 intron CG2121 - chr2R_7_8400001 chr2R_8400001 RAL-352 299 chr2R 8406076 8406095 chr2R 8406153 8406172 4 77 7.5 7.0 7.2 0.5 96 chr2R 8406076 intron CG2121 - chr2R 8406124 intron CG2121 - chr2R 8406172 intron CG2121 - chr2R_4_8405001 chr2R_8405001 RAL-352 300 chr2R 8522176 8522202 chr2R 8522258 8522271 7 75 9.0 5.0 7.0 0.9 95 chr2R 8522176 5` UTR mtt - chr2R 8522224 5` UTR mtt - chr2R 8522271 5` UTR mtt - chr2R_7_8520001 chr2R_8520001 RAL-352 301 chr2R 8635926 8635930 chr2R 8636004 8636008 4 78 0.0 3.0 1.5 1.6 82 chr2R 8635926 intergenic not near genes chr2R 8635967 intergenic not near genes chr2R 8636008 intergenic not near genes chr2R_4_8635001 chr2R_8635001 RAL-352 302 chr2R 8714707 8714718 chr2R 8714793 8714805 5 85 1.5 10.0 5.8 0.7 98 chr2R 8714707 3` UTR PGRP-SC1b + chr2R 8714756 3` UTR PGRP-SC1b + chr2R 8714805 3` UTR PGRP-SC1b + chr2R_5_8710001 chr2R_8710001 RAL-352 303 chr2R 8722772 8722786 chr2R 8723008 8723009 pogo 10 238 7.0 4.5 5.8 1.5 237 chr2R 8722772 intron CG14767 - chr2R 8722890 intron CG14767 - chr2R 8723009 intron CG14767 - chr2R_10_8720001 chr2R_8720001 RAL-352 304 chr2R 8722789 8722794 chr2R 8723006 8723035 pogo 4 232 4.0 3.0 3.5 0.9 246 chr2R 8722789 intron CG14767 - chr2R 8722912 intron CG14767 - chr2R 8723035 intron CG14767 - chr2R_4_8720001 chr2R_8720001 RAL-352 305 chr2R 8859653 8859680 chr2R 8859730 8859732 4 71 6.5 6.5 6.5 0.5 79 chr2R 8859653 intergenic not near genes chr2R 8859692 intergenic not near genes chr2R 8859732 intergenic not near genes chr2R_4_8855001 chr2R_8855001 RAL-352 306 chr2R 9052708 9052738 chr2R 9052788 9052819 5 81 7.5 10.0 8.8 0.5 111 chr2R 9052708 intron CG13743 - chr2R 9052764 intron CG13743 - chr2R 9052819 intron CG13743 - chr2R_5_9050001 chr2R_9050001 RAL-352 307 chr2R 9055435 9055464 chr2R 9055563 9055592 4 128 10.5 10.0 10.2 0.4 157 chr2R 9055435 intron CG13743 - chr2R 9055514 intron CG13743 - chr2R 9055592 intron CG13743 - chr2R_4_9055001 chr2R_9055001 RAL-352 308 chr2R 9212703 9212721 chr2R 9213177 9213207 roo 5 483 5.0 2.5 3.8 1.0 504 chr2R 9212703 intergenic CR45309 + chr2R 9212955 intergenic CR45309 + chr2R 9213207 5` UTR CR45309 + chr2R_5_9210001 chr2R_9210001 RAL-352 309 chr2R 9368127 9368153 chr2R 9368202 9368229 10 73 1.5 1.0 1.2 4.5 102 chr2R 9368127 intron CG13954 - chr2R 9368178 intron CG13954 - chr2R 9368229 intron CG13954 - chr2R_10_9365001 chr2R_9365001 RAL-352 310 chr2R 9510667 9510693 chr2R 9510783 9510809 7 116 1.5 4.0 2.8 1.8 142 chr2R 9510667 intron brp + chr2R 9510738 intron brp + chr2R 9510809 intron brp + chr2R_7_9510001 chr2R_9510001 RAL-352 311 chr2R 9653272 9653284 chr2R 9653356 9653368 4 84 6.0 5.5 5.8 0.6 96 chr2R 9653272 intron Mmp2 - chr2R 9653320 intron Mmp2 - chr2R 9653368 intron Mmp2 - chr2R_4_9650001 chr2R_9650001 RAL-352 312 chr2R 9790077 9790107 chr2R 9790153 9790180 4 75 15.0 20.0 17.5 0.2 103 chr2R 9790077 intron,5` UTR CG1688 -,CR44208 + chr2R 9790128 intron,5` UTR CG1688 -,CR44208 + chr2R 9790180 intron,5` UTR CG1688 -,CR44208 + chr2R_4_9790001 chr2R_9790001 RAL-352 313 chr2R 9928426 9928449 chr2R 9928551 9928574 8 122 2.5 1.5 2.0 2.7 148 chr2R 9928426 intron Mef2 - chr2R 9928500 intron Mef2 - chr2R 9928574 intron Mef2 - chr2R_8_9925001 chr2R_9925001 RAL-352 314 chr2R 9963368 9963400 chr2R 9963486 9963518 6 113 9.0 13.0 11.0 0.5 150 chr2R 9963368 3` UTR Pal1 + chr2R 9963443 3` UTR Pal1 + chr2R 9963518 3` UTR Pal1 + chr2R_6_9960001 chr2R_9960001 RAL-352 315 chr2R 10004589 10004625 chr2R 10004686 10004723 8 98 7.0 9.0 8.0 0.9 134 chr2R 10004589 intron Pka-R2 - chr2R 10004656 intron Pka-R2 - chr2R 10004723 intron Pka-R2 - chr2R_8_10000001 chr2R_10000001 RAL-352 316 chr2R 10005866 10005884 chr2R 10007021 10007030 1360 6 1160 10.0 13.0 11.5 0.5 1164 chr2R 10005866 intron Pka-R2 - chr2R 10006448 intron Pka-R2 - chr2R 10007030 intron Pka-R2 - chr2R_6_10005001 chr2R_10005001 RAL-352 317 chr2R 10132206 10132219 chr2R 10132283 10132299 5 79 9.0 11.5 10.2 0.4 93 chr2R 10132206 intron gem + chr2R 10132252 intron gem + chr2R 10132299 intron gem + chr2R_5_10130001 chr2R_10130001 RAL-352 318 chr2R 10167116 10167146 chr2R 10167187 10167200 4 65 20.0 21.0 20.5 0.2 84 chr2R 10167116 intron KCNQ - chr2R 10167158 intron KCNQ - chr2R 10167200 intron KCNQ - chr2R_4_10165001 chr2R_10165001 RAL-352 319 chr2R 10216201 10216224 chr2R 10216266 10216301 5 74 3.0 2.5 2.8 1.3 100 chr2R 10216201 intron,intron CG12912 -,Hr46 - chr2R 10216251 intron,intron CG12912 -,Hr46 - chr2R 10216301 intron,intron CG12912 -,Hr46 - chr2R_5_10215001 chr2R_10215001 RAL-352 320 chr2R 10352673 10352700 chr2R 10352750 10352777 7 76 2.5 3.0 2.8 1.8 104 chr2R 10352673 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352725 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352777 intron,exon,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R_7_10350001 chr2R_10350001 RAL-352 321 chr2R 10387987 10388003 chr2R 10388072 10388081 4 88 5.5 8.5 7.0 0.5 94 chr2R 10387987 intron CG42732 - chr2R 10388034 intron CG42732 - chr2R 10388081 intron CG42732 - chr2R_4_10385001 chr2R_10385001 RAL-352 322 chr2R 10454098 10454122 chr2R 10454173 10454198 6 76 7.0 8.0 7.5 0.7 100 chr2R 10454098 intron,intron Galphao +,Cyp49a1 - chr2R 10454148 intron,intron Galphao +,Cyp49a1 - chr2R 10454198 intron,intron Galphao +,Cyp49a1 - chr2R_6_10450001 chr2R_10450001 RAL-352 323 chr2R 10572019 10572039 chr2R 10572209 10572231 8 190 7.5 7.0 7.2 1.0 212 chr2R 10572019 intron psq + chr2R 10572125 intron psq + chr2R 10572231 intron psq + chr2R_8_10570001 chr2R_10570001 RAL-352 324 chr2R 10585579 10585590 chr2R 10594150 10594167 Tirant 4 8575 2.5 4.5 3.5 0.9 8588 chr2R 10585579 intron psq + chr2R 10589873 intron psq + chr2R 10594167 intron psq + chr2R_4_10585001 chr2R_10585001 RAL-352 325 chr2R 10653225 10653236 chr2R 10653282 10653313 4 73 1.5 2.0 1.8 1.4 88 chr2R 10653225 intergenic not near genes chr2R 10653269 intergenic not near genes chr2R 10653313 intergenic not near genes chr2R_4_10650001 chr2R_10650001 RAL-352 326 chr2R 10930894 10930925 chr2R 10931291 10931316 6 392 2.5 4.5 3.5 1.3 422 chr2R 10930894 intergenic not near genes chr2R 10931105 intergenic not near genes chr2R 10931316 intergenic not near genes chr2R_6_10930001 chr2R_10930001 RAL-352 327 chr2R 10948035 10948061 chr2R 10955580 10955607 17.6 9 7542 1.0 6.5 3.8 1.9 7572 chr2R 10948035 intergenic not near genes chr2R 10951821 intergenic not near genes chr2R 10955607 intergenic not near genes chr2R_9_10950001 chr2R_10950001 RAL-352 328 chr2R 10976365 10976377 chr2R 10976448 10976449 5 80 1.0 1.5 1.2 2.3 84 chr2R 10976365 intergenic not near genes chr2R 10976407 intergenic not near genes chr2R 10976449 intergenic not near genes chr2R_5_10975001 chr2R_10975001 RAL-352 329 chr2R 10989478 10989483 chr2R 10989530 10989559 4 66 2.5 3.0 2.8 1.1 81 chr2R 10989478 intron luna - chr2R 10989518 intron luna - chr2R 10989559 intron luna - chr2R_4_10985001 chr2R_10985001 RAL-352 330 chr2R 11009818 11009846 chr2R 11018992 11019018 roo 12 9172 2.5 3.0 2.8 3.2 9200 chr2R 11009818 intron luna - chr2R 11014418 intron luna - chr2R 11019018 intron luna - chr2R_12_11010001 chr2R_11010001 RAL-352 331 chr2R 11019878 11019914 chr2R 11024944 11024965 jockey 10 5058 1.5 0.0 0.8 5.6 5087 chr2R 11019878 intron luna - chr2R 11022422 intron luna - chr2R 11024965 intron luna - chr2R_10_11020001 chr2R_11020001 RAL-352 332 chr2R 11102868 11102895 chr2R 11102946 11102973 8 81 2.0 0.0 1.0 4.0 105 chr2R 11102868 intron luna - chr2R 11102920 intron luna - chr2R 11102973 intron luna - chr2R_8_11100001 chr2R_11100001 RAL-352 333 chr2R 11207814 11207848 chr2R 11208007 11208039 BS 10 188 2.5 2.0 2.2 3.1 225 chr2R 11207814 intron shn + chr2R 11207926 intron shn + chr2R 11208039 intron shn + chr2R_10_11205001 chr2R_11205001 RAL-352 334 chr2R 11216624 11216652 chr2R 11216708 11216725 8 82 4.5 2.5 3.5 1.8 101 chr2R 11216624 3` UTR shn + chr2R 11216674 3` UTR shn + chr2R 11216725 3` UTR shn + chr2R_8_11215001 chr2R_11215001 RAL-352 335 chr2R 11415541 11415551 chr2R 11418673 11418699 opus 4 3138 2.5 5.0 3.8 0.8 3158 chr2R 11415541 intron Drip - chr2R 11417120 intron Drip - chr2R 11418699 intron Drip - chr2R_4_11415001 chr2R_11415001 RAL-352 336 chr2R 11419872 11419895 chr2R 11420002 11420024 7 128 3.0 3.0 3.0 1.8 152 chr2R 11419872 intron Drip - chr2R 11419948 intron Drip - chr2R 11420024 intron Drip - chr2R_7_11415001 chr2R_11415001 RAL-352 337 chr2R 11472650 11472674 chr2R 11473847 11473871 pogo 7 1195 4.5 2.0 3.2 1.7 1221 chr2R 11472650 intergenic not near genes chr2R 11473260 intergenic not near genes chr2R 11473871 intergenic not near genes chr2R_7_11470001 chr2R_11470001 RAL-352 338 chr2R 11636417 11636437 chr2R 11636487 11636498 4 65 1.5 2.5 2.0 1.3 81 chr2R 11636417 intron CG9005 - chr2R 11636458 intron CG9005 - chr2R 11636498 intron CG9005 - chr2R_4_11635001 chr2R_11635001 RAL-352 339 chr2R 11677873 11677894 chr2R 11677951 11677972 4 78 2.0 0.0 1.0 2.0 99 chr2R 11677873 intron,exon Roc2 -,Tret1-2 + chr2R 11677922 intron,3` UTR Roc2 -,Tret1-2 + chr2R 11677972 intron,3` UTR Roc2 -,Tret1-2 + chr2R_4_11675001 chr2R_11675001 RAL-352 340 chr2R 12120404 12120437 chr2R 12120485 12120517 8 72 2.5 4.5 3.5 1.8 113 chr2R 12120404 intergenic not near genes chr2R 12120460 intergenic not near genes chr2R 12120517 intergenic not near genes chr2R_8_12120001 chr2R_12120001 RAL-352 341 chr2R 12124828 12124860 chr2R 12124912 12124944 5 83 3.0 1.5 2.2 1.6 116 chr2R 12124828 intergenic not near genes chr2R 12124886 intergenic not near genes chr2R 12124944 intergenic not near genes chr2R_5_12120001 chr2R_12120001 RAL-352 342 chr2R 12187471 12187508 chr2R 12190094 12190124 33 2624 118.0 80.0 99.0 0.3 2653 chr2R 12187471 exon Cyp6g1 + chr2R 12188798 exon Cyp6g2 - chr2R 12190124 exon Cyp6g2 - chr2R_33_12185001 chr2R_12185001 RAL-352 343 chr2R 12363384 12363416 chr2R 12363816 12363848 11 431 2.0 8.5 5.2 1.8 464 chr2R 12363384 intergenic CG30043 + chr2R 12363616 intergenic CG30043 + chr2R 12363848 intergenic not near genes chr2R_11_12360001 chr2R_12360001 RAL-352 344 chr2R 12385344 12385374 chr2R 12385424 12385455 6 80 0.0 4.5 2.2 1.9 111 chr2R 12385344 intergenic not near genes chr2R 12385400 intergenic not near genes chr2R 12385455 intergenic not near genes chr2R_6_12385001 chr2R_12385001 RAL-352 345 chr2R 12417461 12417484 chr2R 12417541 12417564 5 74 5.0 5.5 5.2 0.8 103 chr2R 12417461 exon CG13157 + chr2R 12417512 exon CG13157 + chr2R 12417564 exon CG13157 + chr2R_5_12415001 chr2R_12415001 RAL-352 346 chr2R 12481149 12481168 chr2R 12482939 12482972 roo 5 1794 2.5 3.5 3.0 1.2 1823 chr2R 12481149 exon Dh44-R2 + chr2R 12482060 intron Dh44-R2 + chr2R 12482972 intron Dh44-R2 + chr2R_5_12480001 chr2R_12480001 RAL-352 347 chr2R 12501699 12501729 chr2R 12503857 12503864 Rt1c 9 2148 3.0 5.0 4.0 1.8 2165 chr2R 12501699 intron fdl - chr2R 12502782 intron fdl - chr2R 12503864 intron fdl - chr2R_9_12500001 chr2R_12500001 RAL-352 348 chr2R 12540475 12540496 chr2R 12540558 12540579 4 80 6.5 6.5 6.5 0.5 104 chr2R 12540475 intron fra + chr2R 12540527 intron fra + chr2R 12540579 intron fra + chr2R_4_12540001 chr2R_12540001 RAL-352 349 chr2R 12602816 12602835 chr2R 12602900 12602918 4 83 1.5 0.0 0.8 2.2 102 chr2R 12602816 intron Amph + chr2R 12602867 intron Amph + chr2R 12602918 intron Amph + chr2R_4_12600001 chr2R_12600001 RAL-352 350 chr2R 12819472 12819475 chr2R 12824534 12824544 jockey 4 5066 4.0 8.0 6.0 0.6 5072 chr2R 12819472 intergenic not near genes chr2R 12822008 intergenic not near genes chr2R 12824544 intergenic not near genes chr2R_4_12820001 chr2R_12820001 RAL-352 351 chr2R 13012482 13012504 chr2R 13012563 13012585 6 80 0.0 5.0 2.5 1.7 103 chr2R 13012482 intergenic not near genes chr2R 13012534 intergenic not near genes chr2R 13012585 intergenic not near genes chr2R_6_13010001 chr2R_13010001 RAL-352 352 chr2R 13089751 13089783 chr2R 13089861 13089893 7 108 2.0 4.0 3.0 1.8 142 chr2R 13089751 intergenic not near genes chr2R 13089822 intergenic not near genes chr2R 13089893 intergenic not near genes chr2R_7_13085001 chr2R_13085001 RAL-352 353 chr2R 13136836 13136842 chr2R 13141634 13141634 Doc 4 4796 7.0 4.5 5.8 0.6 4798 chr2R 13136836 exon Cap-G + chr2R 13139235 intron Cap-G + chr2R 13141634 intron Cap-G + chr2R_4_13135001 chr2R_13135001 RAL-352 354 chr2R 13136843 13136865 chr2R 13141632 13141659 Doc 7 4793 5.0 3.5 4.2 1.3 4816 chr2R 13136843 exon Cap-G + chr2R 13139251 intron Cap-G + chr2R 13141659 intron Cap-G + chr2R_7_13135001 chr2R_13135001 RAL-352 355 chr2R 13320662 13320689 chr2R 13321088 13321116 7 425 5.5 3.0 4.2 1.3 454 chr2R 13320662 intergenic not near genes chr2R 13320889 intergenic not near genes chr2R 13321116 intergenic not near genes chr2R_7_13320001 chr2R_13320001 RAL-352 356 chr2R 13358764 13358795 chr2R 13358860 13358890 12 95 4.0 2.0 3.0 3.0 126 chr2R 13358764 intergenic not near genes chr2R 13358827 intergenic not near genes chr2R 13358890 intergenic not near genes chr2R_12_13355001 chr2R_13355001 RAL-352 357 chr2R 13431488 13431515 chr2R 13431567 13431594 11 78 1.5 0.5 1.0 5.5 106 chr2R 13431488 intron CG42321 - chr2R 13431541 intron CG42321 - chr2R 13431594 intron CG42321 - chr2R_11_13430001 chr2R_13430001 RAL-352 358 chr2R 13438862 13438893 chr2R 13440180 13440211 11 1320 13.5 38.5 26.0 0.4 1349 chr2R 13438862 5` UTR CG42321 - chr2R 13439536 3` UTR cnn - chr2R 13440211 exon cnn - chr2R_11_13435001 chr2R_13435001 RAL-352 359 chr2R 13566259 13566287 chr2R 13566339 13566367 12 79 3.0 0.5 1.8 4.3 108 chr2R 13566259 intergenic not near genes chr2R 13566313 intergenic not near genes chr2R 13566367 intergenic not near genes chr2R_12_13565001 chr2R_13565001 RAL-352 360 chr2R 13721210 13721214 chr2R 13721292 13721294 4 81 6.5 3.0 4.8 0.7 84 chr2R 13721210 intron fas + chr2R 13721252 intron fas + chr2R 13721294 intron fas + chr2R_4_13720001 chr2R_13720001 RAL-352 361 chr2R 13721222 13721229 chr2R 13721289 13721298 4 69 4.0 3.5 3.8 0.8 76 chr2R 13721222 intron fas + chr2R 13721260 intron fas + chr2R 13721298 intron fas + chr2R_4_13720001 chr2R_13720001 RAL-352 362 chr2R 13784092 13784111 chr2R 13784337 13784356 6 244 2.5 4.0 3.2 1.4 264 chr2R 13784092 intron,5` UTR Cpr50Ca +,CR43810 + chr2R 13784224 intron,intron Cpr50Ca +,CR43810 + chr2R 13784356 intron,5` UTR Cpr50Ca +,CR43810 + chr2R_6_13780001 chr2R_13780001 RAL-352 363 chr2R 13905611 13905629 chr2R 13907584 13907604 Rt1a 4 1974 5.5 4.5 5.0 0.7 1993 chr2R 13905611 intron shot - chr2R 13906608 intron shot - chr2R 13907604 intron shot - chr2R_4_13905001 chr2R_13905001 RAL-352 364 chr2R 14093440 14093448 chr2R 14109585 14109595 4 16148 2.0 0.0 1.0 2.0 16155 chr2R 14093440 intron Prosap - chr2R 14101518 intron Prosap - chr2R 14109595 intron Prosap - chr2R_4_14100001 chr2R_14100001 RAL-352 365 chr2R 14318588 14318603 chr2R 14318667 14318688 4 76 0.0 0.0 0.0 4.0 100 chr2R 14318588 intron Shroom + chr2R 14318638 intron Shroom + chr2R 14318688 intron Shroom + chr2R_4_14315001 chr2R_14315001 RAL-352 366 chr2R 14393867 14393897 chr2R 14393950 14393981 11 83 1.5 3.0 2.2 3.4 114 chr2R 14393867 intergenic not near genes chr2R 14393924 intergenic not near genes chr2R 14393981 intergenic not near genes chr2R_11_14390001 chr2R_14390001 RAL-352 367 chr2R 14467305 14467327 chr2R 14476463 14476484 roo 12 9155 2.0 3.0 2.5 3.4 9179 chr2R 14467305 intergenic not near genes chr2R 14471894 intergenic not near genes chr2R 14476484 5` UTR CR44462 + chr2R_12_14470001 chr2R_14470001 RAL-352 368 chr2R 14565563 14565593 chr2R 14565639 14565670 4 71 0.5 1.5 1.0 2.0 107 chr2R 14565563 intron ttv + chr2R 14565616 intron ttv + chr2R 14565670 intron ttv + chr2R_4_14565001 chr2R_14565001 RAL-352 369 chr2R 14569987 14570020 chr2R 14570379 14570414 8 390 1.5 4.0 2.8 2.1 427 chr2R 14569987 intron ttv + chr2R 14570200 intron ttv + chr2R 14570414 intron ttv + chr2R_8_14570001 chr2R_14570001 RAL-352 370 chr2R 14850056 14850086 chr2R 14850162 14850192 4 106 26.5 31.5 29.0 0.1 136 chr2R 14850056 exon SMC2 - chr2R 14850124 intron SMC2 - chr2R 14850192 exon SMC2 - chr2R_4_14850001 chr2R_14850001 RAL-352 371 chr2R 14911700 14911726 chr2R 14911823 14911849 9 123 2.5 1.5 2.0 3.0 149 chr2R 14911700 intron CG10249 - chr2R 14911774 intron CG10249 - chr2R 14911849 intron CG10249 - chr2R_9_14910001 chr2R_14910001 RAL-352 372 chr2R 14917244 14917269 chr2R 14917332 14917359 6 89 2.5 3.0 2.8 1.6 115 chr2R 14917244 intron CG10249 - chr2R 14917302 intron CG10249 - chr2R 14917359 intron CG10249 - chr2R_6_14915001 chr2R_14915001 RAL-352 373 chr2R 14922148 14922170 chr2R 14922224 14922246 10 74 3.0 2.5 2.8 2.6 98 chr2R 14922148 intron CG10249 - chr2R 14922197 intron CG10249 - chr2R 14922246 intron CG10249 - chr2R_10_14920001 chr2R_14920001 RAL-352 374 chr2R 15004737 15004753 chr2R 15005054 15005082 jockey 5 326 2.0 2.0 2.0 1.7 345 chr2R 15004737 intergenic not near genes chr2R 15004910 intergenic not near genes chr2R 15005082 intergenic not near genes chr2R_5_15000001 chr2R_15000001 RAL-352 375 chr2R 15015454 15015488 chr2R 15022878 15022912 mdg1 11 7422 2.0 4.5 3.2 2.6 7458 chr2R 15015454 intron hbs + chr2R 15019183 intron hbs + chr2R 15022912 intron hbs + chr2R_11_15015001 chr2R_15015001 RAL-352 376 chr2R 15079031 15079050 chr2R 15079588 15079607 7 556 0.0 6.5 3.2 1.7 576 chr2R 15079031 intergenic not near genes chr2R 15079319 intergenic not near genes chr2R 15079607 intergenic not near genes chr2R_7_15075001 chr2R_15075001 RAL-352 377 chr2R 15084977 15085006 chr2R 15092026 15092055 297 5 7048 1.5 2.0 1.8 1.8 7078 chr2R 15084977 intergenic not near genes chr2R 15088516 intergenic not near genes chr2R 15092055 5` UTR CR44457 + chr2R_5_15085001 chr2R_15085001 RAL-352 378 chr2R 15117450 15117461 chr2R 15117542 15117548 5 92 4.0 5.5 4.8 0.9 98 chr2R 15117450 intron chn + chr2R 15117499 intron chn + chr2R 15117548 intron chn + chr2R_5_15115001 chr2R_15115001 RAL-352 379 chr2R 15119320 15119350 chr2R 15127801 15127830 Tirant 9 8480 5.5 3.0 4.2 1.7 8510 chr2R 15119320 intron chn + chr2R 15123575 intron chn + chr2R 15127830 intron chn + chr2R_9_15120001 chr2R_15120001 RAL-352 380 chr2R 15133487 15133509 chr2R 15133561 15133588 4 78 3.0 3.0 3.0 1.0 101 chr2R 15133487 intron chn + chr2R 15133538 intron chn + chr2R 15133588 intron chn + chr2R_4_15130001 chr2R_15130001 RAL-352 381 chr2R 15134304 15134307 chr2R 15134375 15134384 5 74 0.0 4.5 2.2 1.6 80 chr2R 15134304 intron chn + chr2R 15134344 intron chn + chr2R 15134384 intron chn + chr2R_5_15130001 chr2R_15130001 RAL-352 382 chr2R 15134308 15134318 chr2R 15134373 15134395 5 73 0.0 3.5 1.8 1.8 87 chr2R 15134308 intron chn + chr2R 15134352 intron chn + chr2R 15134395 intron chn + chr2R_5_15130001 chr2R_15130001 RAL-352 383 chr2R 15137971 15138004 chr2R 15138051 15138086 5 80 1.5 0.0 0.8 2.8 115 chr2R 15137971 intron chn + chr2R 15138028 intron chn + chr2R 15138086 intron chn + chr2R_5_15135001 chr2R_15135001 RAL-352 384 chr2R 15196101 15196127 chr2R 15196197 15196220 13 94 5.0 6.0 5.5 2.0 119 chr2R 15196101 intergenic not near genes chr2R 15196160 intergenic not near genes chr2R 15196220 intergenic not near genes chr2R_13_15195001 chr2R_15195001 RAL-352 385 chr2R 15283277 15283302 chr2R 15283371 15283395 6 94 1.5 4.5 3.0 1.5 118 chr2R 15283277 intron Trpm - chr2R 15283336 intron Trpm - chr2R 15283395 intron Trpm - chr2R_6_15280001 chr2R_15280001 RAL-352 386 chr2R 15296160 15296173 chr2R 15296243 15296256 4 83 5.0 3.5 4.2 0.8 96 chr2R 15296160 intron Trpm - chr2R 15296208 intron Trpm - chr2R 15296256 intron Trpm - chr2R_4_15295001 chr2R_15295001 RAL-352 387 chr2R 15584266 15584291 chr2R 15584779 15584779 8 505 2.0 3.5 2.8 2.1 513 chr2R 15584266 intergenic not near genes chr2R 15584522 intergenic not near genes chr2R 15584779 intergenic not near genes chr2R_8_15580001 chr2R_15580001 RAL-352 388 chr2R 15700246 15700267 chr2R 15700357 15700372 5 111 0.5 5.0 2.8 1.3 126 chr2R 15700246 intron,5` UTR CG30080 -,CG42662 - chr2R 15700309 intron,5` UTR CG30080 -,CG42662 - chr2R 15700372 intron,5` UTR CG30080 -,CG42662 - chr2R_5_15700001 chr2R_15700001 RAL-352 389 chr2R 16530492 16530498 chr2R 16530665 16530670 5 173 6.5 0.0 3.2 1.2 178 chr2R 16530492 intron Sema-2a + chr2R 16530581 intron Sema-2a + chr2R 16530670 intron Sema-2a + chr2R_5_16530001 chr2R_16530001 RAL-352 390 chr2R 16617059 16617082 chr2R 16617138 16617145 4 74 4.5 3.0 3.8 0.8 86 chr2R 16617059 intron CG5065 + chr2R 16617102 intron CG5065 + chr2R 16617145 intron CG5065 + chr2R_4_16615001 chr2R_16615001 RAL-352 391 chr2R 16737141 16737154 chr2R 16737241 16737252 6 100 7.5 4.0 5.8 0.9 111 chr2R 16737141 3` UTR CG43104 - chr2R 16737196 3` UTR CG43104 - chr2R 16737252 exon CG43104 - chr2R_6_16735001 chr2R_16735001 RAL-352 392 chr2R 16740907 16740921 chr2R 16740981 16740994 7 88 1.5 6.5 4.0 1.4 87 chr2R 16740907 intergenic not near genes chr2R 16740950 intergenic not near genes chr2R 16740994 intergenic not near genes chr2R_7_16740001 chr2R_16740001 RAL-352 393 chr2R 16775649 16775674 chr2R 16775913 16775938 6 264 1.0 2.5 1.8 2.1 289 chr2R 16775649 3` UTR Arp53D + chr2R 16775794 intergenic Arp53D + chr2R 16775938 intergenic Arp53D + chr2R_6_16775001 chr2R_16775001 RAL-352 394 chr2R 16808746 16808752 chr2R 16808894 16808899 4 147 5.0 6.0 5.5 0.6 153 chr2R 16808746 intergenic not near genes chr2R 16808822 intergenic not near genes chr2R 16808899 intergenic not near genes chr2R_4_16805001 chr2R_16805001 RAL-352 395 chr2R 16808760 16808764 chr2R 16808883 16808885 5 138 2.0 3.5 2.8 1.3 125 chr2R 16808760 intergenic not near genes chr2R 16808822 intergenic not near genes chr2R 16808885 intergenic not near genes chr2R_5_16805001 chr2R_16805001 RAL-352 396 chr2R 16893780 16893791 chr2R 16893863 16893863 4 80 5.0 1.0 3.0 1.0 83 chr2R 16893780 intron CG8910 - chr2R 16893822 intron CG8910 - chr2R 16893863 intron CG8910 - chr2R_4_16890001 chr2R_16890001 RAL-352 397 chr2R 16910234 16910243 chr2R 16910332 16910340 4 98 3.0 4.0 3.5 0.9 106 chr2R 16910234 intergenic not near genes chr2R 16910287 intergenic not near genes chr2R 16910340 intergenic not near genes chr2R_4_16910001 chr2R_16910001 RAL-352 398 chr2R 17147245 17147251 chr2R 17152276 17152282 jockey 4 5031 8.5 5.5 7.0 0.5 5037 chr2R 17147245 intergenic not near genes chr2R 17149764 intergenic not near genes chr2R 17152282 intergenic not near genes chr2R_4_17145001 chr2R_17145001 RAL-352 399 chr2R 17176361 17176378 chr2R 17182551 17182568 diver 5 6189 2.0 4.5 3.2 1.2 6207 chr2R 17176361 intergenic not near genes chr2R 17179464 intergenic not near genes chr2R 17182568 intergenic not near genes chr2R_5_17175001 chr2R_17175001 RAL-352 400 chr2R 17242944 17242976 chr2R 17243027 17243059 6 80 3.5 3.0 3.2 1.4 115 chr2R 17242944 intron mbl + chr2R 17243002 intron mbl + chr2R 17243059 intron mbl + chr2R_6_17240001 chr2R_17240001 RAL-352 401 chr2R 17389272 17389301 chr2R 17389358 17389392 6 88 5.0 4.5 4.8 1.0 120 chr2R 17389272 intergenic CR44344 - chr2R 17389332 intergenic CR44344 - chr2R 17389392 intergenic CR44344 - chr2R_6_17385001 chr2R_17385001 RAL-352 402 chr2R 17459013 17459024 chr2R 17459097 17459109 4 83 6.0 1.5 3.8 0.8 96 chr2R 17459013 intron CG14478 + chr2R 17459061 intron CG14478 + chr2R 17459109 intron CG14478 + chr2R_4_17455001 chr2R_17455001 RAL-352 403 chr2R 17485933 17485941 chr2R 17490685 17490696 F-element 4 4754 0.5 4.0 2.2 1.2 4763 chr2R 17485933 5` UTR,intron CG43110 -,NT5E-2 + chr2R 17488314 intron NT5E-2 + chr2R 17490696 intron NT5E-2 + chr2R_4_17485001 chr2R_17485001 RAL-352 404 chr2R 17641119 17641140 chr2R 17641226 17641246 7 107 3.0 2.0 2.5 2.0 127 chr2R 17641119 intergenic not near genes chr2R 17641182 intergenic not near genes chr2R 17641246 intergenic not near genes chr2R_7_17640001 chr2R_17640001 RAL-352 405 chr2R 17784033 17784057 chr2R 17784266 17784298 pogo 10 238 2.5 2.5 2.5 2.9 265 chr2R 17784033 intergenic mir-31a - chr2R 17784166 intergenic mir-31a - chr2R 17784298 intergenic mir-31a - chr2R_10_17780001 chr2R_17780001 RAL-352 406 chr2R 17982924 17982947 chr2R 17983009 17983016 7 82 4.0 4.0 4.0 1.4 92 chr2R 17982924 intron dpr13 - chr2R 17982970 intron dpr13 - chr2R 17983016 intron dpr13 - chr2R_7_17980001 chr2R_17980001 RAL-352 407 chr2R 17990776 17990800 chr2R 17990925 17990946 5 148 1.5 2.0 1.8 1.8 170 chr2R 17990776 intron dpr13 - chr2R 17990861 intron dpr13 - chr2R 17990946 intron dpr13 - chr2R_5_17990001 chr2R_17990001 RAL-352 408 chr2R 18224613 18224627 chr2R 18224676 18224707 4 74 1.5 2.5 2.0 1.3 94 chr2R 18224613 intergenic not near genes chr2R 18224660 intergenic not near genes chr2R 18224707 intergenic not near genes chr2R_4_18220001 chr2R_18220001 RAL-352 409 chr2R 18313499 18313515 chr2R 18313575 18313590 4 76 6.0 1.5 3.8 0.8 91 chr2R 18313499 intron sbb - chr2R 18313544 intron sbb - chr2R 18313590 intron sbb - chr2R_4_18310001 chr2R_18310001 RAL-352 410 chr2R 18358395 18358409 chr2R 18372605 18372621 roo 4 14212 5.0 2.0 3.5 0.9 14226 chr2R 18358395 intergenic not near genes chr2R 18365508 intergenic not near genes chr2R 18372621 intergenic not near genes chr2R_4_18365001 chr2R_18365001 RAL-352 411 chr2R 18575812 18575827 chr2R 18581983 18582010 3S18 10 6183 5.5 6.5 6.0 1.4 6198 chr2R 18575812 intron GEFmeso - chr2R 18578911 intron GEFmeso - chr2R 18582010 intron GEFmeso - chr2R_10_18575001 chr2R_18575001 RAL-352 412 chr2R 18590868 18590894 chr2R 18600019 18600046 roo 7 9151 4.5 3.0 3.8 1.5 9178 chr2R 18590868 intron GEFmeso - chr2R 18595457 intron GEFmeso - chr2R 18600046 intron GEFmeso - chr2R_7_18595001 chr2R_18595001 RAL-352 413 chr2R 18676034 18676056 chr2R 18676114 18676137 4 80 2.0 2.0 2.0 1.3 103 chr2R 18676034 intergenic not near genes chr2R 18676086 intergenic not near genes chr2R 18676137 intergenic not near genes chr2R_4_18675001 chr2R_18675001 RAL-352 414 chr2R 18732357 18732371 chr2R 18732490 18732504 4 132 2.5 2.0 2.2 1.2 147 chr2R 18732357 intron Hs3st-A + chr2R 18732430 intron Hs3st-A + chr2R 18732504 intron Hs3st-A + chr2R_4_18730001 chr2R_18730001 RAL-352 415 chr2R 19002648 19002678 chr2R 19002727 19002755 7 72 2.0 2.0 2.0 2.3 107 chr2R 19002648 intron tn + chr2R 19002702 intron tn + chr2R 19002755 intron tn + chr2R_7_19000001 chr2R_19000001 RAL-352 416 chr2R 19148686 19148705 chr2R 19148756 19148768 6 70 1.5 2.0 1.8 2.1 82 chr2R 19148686 intron ena + chr2R 19148727 intron ena + chr2R 19148768 intron ena + chr2R_6_19145001 chr2R_19145001 RAL-352 417 chr2R 19373683 19373713 chr2R 19373864 19373893 6 180 3.5 5.0 4.2 1.2 210 chr2R 19373683 5` UTR CG9416 - chr2R 19373788 intergenic CG9416 - chr2R 19373893 intergenic CG9416 - chr2R_6_19370001 chr2R_19370001 RAL-352 418 chr2R 19405442 19405467 chr2R 19405530 19405542 4 83 1.0 0.0 0.5 2.7 100 chr2R 19405442 intron hts - chr2R 19405492 intron hts - chr2R 19405542 intron hts - chr2R_4_19405001 chr2R_19405001 RAL-352 419 chr2R 19776597 19776628 chr2R 19779920 19779951 jockey 5 3323 3.5 2.0 2.8 1.3 3354 chr2R 19776597 intergenic not near genes chr2R 19778274 intergenic not near genes chr2R 19779951 intergenic not near genes chr2R_5_19775001 chr2R_19775001 RAL-352 420 chr2R 19957435 19957455 chr2R 19962630 19962655 copia 5 5199 5.0 1.0 3.0 1.2 5220 chr2R 19957435 intergenic CG44623 + chr2R 19960045 intergenic not near genes chr2R 19962655 intergenic not near genes chr2R_5_19960001 chr2R_19960001 RAL-352 421 chr2R 19996389 19996417 chr2R 19996473 19996501 9 82 1.5 3.0 2.2 2.8 112 chr2R 19996389 intergenic not near genes chr2R 19996445 intergenic not near genes chr2R 19996501 intergenic not near genes chr2R_9_19995001 chr2R_19995001 RAL-352 422 chr2R 19997738 19997766 chr2R 19998159 19998187 10 420 1.5 2.0 1.8 3.6 449 chr2R 19997738 intergenic not near genes chr2R 19997962 intergenic not near genes chr2R 19998187 intergenic not near genes chr2R_10_19995001 chr2R_19995001 RAL-352 423 chr2R 20162681 20162713 chr2R 20162798 20162830 9 115 3.0 5.5 4.2 1.7 149 chr2R 20162681 intergenic not near genes chr2R 20162756 intergenic not near genes chr2R 20162830 intergenic not near genes chr2R_9_20160001 chr2R_20160001 RAL-352 424 chr2R 20172217 20172248 chr2R 20172308 20172338 8 84 0.5 1.5 1.0 4.0 121 chr2R 20172217 intergenic not near genes chr2R 20172278 intergenic not near genes chr2R 20172338 intergenic not near genes chr2R_8_20170001 chr2R_20170001 RAL-352 425 chr2R 20408515 20408548 chr2R 20408592 20408625 12 74 3.5 4.0 3.8 2.5 110 chr2R 20408515 intergenic not near genes chr2R 20408570 intergenic not near genes chr2R 20408625 intergenic not near genes chr2R_12_20405001 chr2R_20405001 RAL-352 426 chr2R 20480582 20480594 chr2R 20480673 20480686 4 90 1.0 5.0 3.0 1.0 104 chr2R 20480582 intergenic not near genes chr2R 20480634 intergenic not near genes chr2R 20480686 intergenic not near genes chr2R_4_20480001 chr2R_20480001 RAL-352 427 chr2R 20739441 20739479 chr2R 20744209 20744247 F-element 9 4766 1.0 2.0 1.5 3.6 4806 chr2R 20739441 intron dpr + chr2R 20741844 intron dpr + chr2R 20744247 intron dpr + chr2R_9_20740001 chr2R_20740001 RAL-352 428 chr2R 20830534 20830564 chr2R 20830614 20830644 16 78 8.0 2.0 5.0 2.7 110 chr2R 20830534 intron,intron insc -,sktl - chr2R 20830589 intron,intron insc -,sktl - chr2R 20830644 intron,intron insc -,sktl - chr2R_16_20830001 chr2R_20830001 RAL-352 429 chr2R 21031761 21031766 chr2R 21031846 21031851 4 87 3.0 2.0 2.5 1.1 90 chr2R 21031761 intergenic not near genes chr2R 21031806 intergenic not near genes chr2R 21031851 intergenic not near genes chr2R_4_21030001 chr2R_21030001 RAL-352 430 chr2R 21081162 21081191 chr2R 21081252 21081269 8 87 2.5 3.0 2.8 2.1 107 chr2R 21081162 intron Treh + chr2R 21081216 intron Treh + chr2R 21081269 intron Treh + chr2R_8_21080001 chr2R_21080001 RAL-352 431 chr2R 21151117 21151146 chr2R 21153750 21153779 opus 7 2632 4.5 2.5 3.5 1.6 2662 chr2R 21151117 intron CG30389 - chr2R 21152448 intron CG30389 - chr2R 21153779 intron CG30389 - chr2R_7_21150001 chr2R_21150001 RAL-352 432 chr2R 21188219 21188235 chr2R 21188299 21188316 6 80 4.0 1.0 2.5 1.7 97 chr2R 21188219 exon tud + chr2R 21188268 intron tud + chr2R 21188316 intron tud + chr2R_6_21185001 chr2R_21185001 RAL-352 433 chr2R 21410082 21410105 chr2R 21410161 21410184 5 78 1.0 0.0 0.5 3.3 102 chr2R 21410082 intron Sdc - chr2R 21410133 intron Sdc - chr2R 21410184 intron Sdc - chr2R_5_21410001 chr2R_21410001 RAL-352 434 chr2R 21660885 21660909 chr2R 21660977 21661002 5 92 3.5 1.0 2.2 1.6 117 chr2R 21660885 intergenic pirk - chr2R 21660944 intergenic pirk - chr2R 21661002 3` UTR pirk - chr2R_5_21660001 chr2R_21660001 RAL-352 435 chr2R 21699914 21699941 chr2R 21700002 21700029 5 88 1.0 3.0 2.0 1.7 115 chr2R 21699914 intron HmgZ - chr2R 21699972 intron HmgZ - chr2R 21700029 intron HmgZ - chr2R_5_21695001 chr2R_21695001 RAL-352 436 chr2R 21753086 21753116 chr2R 21753571 21753601 roo 9 482 4.5 1.0 2.8 2.4 515 chr2R 21753086 intergenic not near genes chr2R 21753344 intergenic not near genes chr2R 21753601 intergenic not near genes chr2R_9_21750001 chr2R_21750001 RAL-352 437 chr2R 21857347 21857372 chr2R 21857436 21857463 5 90 3.5 2.5 3.0 1.2 116 chr2R 21857347 intergenic not near genes chr2R 21857405 intergenic not near genes chr2R 21857463 intergenic not near genes chr2R_5_21855001 chr2R_21855001 RAL-352 438 chr2R 21886131 21886165 chr2R 21886210 21886244 7 77 3.5 0.0 1.8 2.5 113 chr2R 21886131 intron Fili + chr2R 21886188 intron Fili + chr2R 21886244 intron Fili + chr2R_7_21885001 chr2R_21885001 RAL-352 439 chr2R 21906294 21906301 chr2R 21906391 21906402 4 100 0.5 3.5 2.0 1.3 108 chr2R 21906294 intron Fili + chr2R 21906348 intron Fili + chr2R 21906402 intron Fili + chr2R_4_21905001 chr2R_21905001 RAL-352 440 chr2R 21919873 21919906 chr2R 21919958 21919974 12 84 2.5 2.0 2.2 3.8 101 chr2R 21919873 intron Fili + chr2R 21919924 intron Fili + chr2R 21919974 intron Fili + chr2R_12_21915001 chr2R_21915001 RAL-352 441 chr2R 22003100 22003121 chr2R 22003174 22003207 7 82 3.5 1.0 2.2 2.2 107 chr2R 22003100 intron CG34370 - chr2R 22003154 intron CG34370 - chr2R 22003207 intron CG34370 - chr2R_7_22000001 chr2R_22000001 RAL-352 442 chr2R 22072685 22072706 chr2R 22072770 22072791 9 83 3.0 3.0 3.0 2.2 106 chr2R 22072685 intron CG11474 - chr2R 22072738 intron CG11474 - chr2R 22072791 intron CG11474 - chr2R_9_22070001 chr2R_22070001 RAL-352 443 chr2R 22148068 22148095 chr2R 22148159 22148194 4 97 9.5 9.5 9.5 0.4 126 chr2R 22148068 intron a + chr2R 22148131 intron a + chr2R 22148194 intron a + chr2R_4_22145001 chr2R_22145001 RAL-352 444 chr2R 22185677 22185705 chr2R 22185776 22185804 4 99 1.0 0.0 0.5 2.7 127 chr2R 22185677 3` UTR MED16 + chr2R 22185740 3` UTR MED16 + chr2R 22185804 3` UTR MED16 + chr2R_4_22185001 chr2R_22185001 RAL-352 445 chr2R 22360383 22360409 chr2R 22360816 22360830 jockey 4 424 6.0 2.0 4.0 0.8 447 chr2R 22360383 intron Liprin-gamma - chr2R 22360606 intron Liprin-gamma - chr2R 22360830 intron Liprin-gamma - chr2R_4_22360001 chr2R_22360001 RAL-352 446 chr2R 22377806 22377830 chr2R 22377892 22377916 4 82 4.0 1.5 2.8 1.1 110 chr2R 22377806 3` UTR Rtf1 + chr2R 22377861 3` UTR Rtf1 + chr2R 22377916 3` UTR Rtf1 + chr2R_4_22375001 chr2R_22375001 RAL-352 447 chr2R 22411519 22411528 chr2R 22411579 22411590 4 70 2.5 2.0 2.2 1.2 71 chr2R 22411519 5` UTR qkr58E-3 - chr2R 22411554 intergenic qkr58E-3 -,Mes4 + chr2R 22411590 intergenic qkr58E-3 -,Mes4 + chr2R_4_22410001 chr2R_22410001 RAL-352 448 chr2R 22525747 22525785 chr2R 22529302 22529340 jockey 10 3552 2.0 3.5 2.8 2.6 3593 chr2R 22525747 intron px - chr2R 22527544 intron px - chr2R 22529340 intron px - chr2R_10_22525001 chr2R_22525001 RAL-352 449 chr2R 22623452 22623485 chr2R 22623592 22623616 12 136 4.0 4.5 4.2 2.3 164 chr2R 22623452 intron CG33143 + chr2R 22623534 intron CG33143 + chr2R 22623616 intron CG33143 + chr2R_12_22620001 chr2R_22620001 RAL-352 450 chr2R 22774962 22774991 chr2R 22775381 22775409 jockey 6 418 4.0 1.0 2.5 1.7 447 chr2R 22774962 intron CG42260 - chr2R 22775186 intron CG42260 - chr2R 22775409 intron CG42260 - chr2R_6_22775001 chr2R_22775001 RAL-352 451 chr2R 22866287 22866298 chr2R 22866375 22866400 6 100 6.0 5.5 5.8 0.9 113 chr2R 22866287 intergenic not near genes chr2R 22866344 intergenic not near genes chr2R 22866400 intergenic not near genes chr2R_6_22865001 chr2R_22865001 RAL-352 452 chr2R 22971504 22971524 chr2R 22971583 22971602 4 78 5.0 2.0 3.5 0.9 98 chr2R 22971504 intergenic not near genes chr2R 22971553 intergenic not near genes chr2R 22971602 intergenic not near genes chr2R_4_22970001 chr2R_22970001 RAL-352 453 chr2R 23172132 23172153 chr2R 23172225 23172246 4 93 14.5 12.0 13.2 0.3 114 chr2R 23172132 intron CG34371 - chr2R 23172189 intron CG34371 - chr2R 23172246 intron CG34371 - chr2R_4_23170001 chr2R_23170001 RAL-352 454 chr2R 23219011 23219025 chr2R 23219249 23219254 4 235 4.5 0.0 2.2 1.2 243 chr2R 23219011 intergenic not near genes chr2R 23219132 intergenic not near genes chr2R 23219254 intergenic not near genes chr2R_4_23215001 chr2R_23215001 RAL-352 455 chr2R 23244941 23244967 chr2R 23245029 23245032 9 85 5.5 5.5 5.5 1.4 91 chr2R 23244941 intron yip3 - chr2R 23244986 intron yip3 - chr2R 23245032 intron yip3 - chr2R_9_23240001 chr2R_23240001 RAL-352 456 chr2R 23275651 23275678 chr2R 23275742 23275761 5 89 3.5 5.0 4.2 1.0 110 chr2R 23275651 intergenic ord - chr2R 23275706 intergenic ord - chr2R 23275761 intergenic ord - chr2R_5_23275001 chr2R_23275001 RAL-352 457 chr2R 23332689 23332716 chr2R 23333354 23333382 7 665 13.0 10.5 11.8 0.5 693 chr2R 23332689 intergenic not near genes chr2R 23333036 intergenic not near genes chr2R 23333382 intergenic not near genes chr2R_7_23330001 chr2R_23330001 RAL-352 458 chr2R 23356274 23356310 chr2R 23356363 23356382 5 82 6.5 10.0 8.2 0.5 108 chr2R 23356274 3` UTR Rpi + chr2R 23356328 3` UTR Rpi + chr2R 23356382 3` UTR,3` UTR Rpi +,CG3500 - chr2R_5_23355001 chr2R_23355001 RAL-352 459 chr2R 23437233 23437247 chr2R 23437310 23437324 5 76 4.0 9.0 6.5 0.7 91 chr2R 23437233 intergenic not near genes chr2R 23437278 intergenic not near genes chr2R 23437324 intergenic not near genes chr2R_5_23435001 chr2R_23435001 RAL-352 460 chr2R 23529587 23529604 chr2R 23537149 23537162 412 5 7561 5.0 4.0 4.5 0.9 7575 chr2R 23529587 intron bw - chr2R 23533374 intron bw - chr2R 23537162 exon bw - chr2R_5_23530001 chr2R_23530001 RAL-352 461 chr2R 23567020 23567042 chr2R 23567112 23567134 9 89 3.5 2.5 3.0 2.2 114 chr2R 23567020 intron apt + chr2R 23567077 intron apt + chr2R 23567134 intron apt + chr2R_9_23565001 chr2R_23565001 RAL-352 462 chr2R 23576238 23576269 chr2R 23576371 23576399 11 131 3.0 0.5 1.8 3.9 161 chr2R 23576238 intron apt + chr2R 23576318 intron apt + chr2R 23576399 intron apt + chr2R_11_23575001 chr2R_23575001 RAL-352 463 chr2R 23607035 23607059 chr2R 23607116 23607140 9 80 2.5 2.5 2.5 2.6 105 chr2R 23607035 intron CG17664 - chr2R 23607088 intron CG17664 - chr2R 23607140 intron CG17664 - chr2R_9_23605001 chr2R_23605001 RAL-352 464 chr2R 23684134 23684159 chr2R 23684230 23684253 12 94 2.0 1.5 1.8 4.3 119 chr2R 23684134 exon St3 + chr2R 23684194 intron St3 + chr2R 23684253 exon St3 + chr2R_12_23680001 chr2R_23680001 RAL-352 465 chr2R 23718287 23718299 chr2R 23718428 23718460 10 149 28.5 31.5 30.0 0.3 173 chr2R 23718287 intron Sesn + chr2R 23718374 intron Sesn + chr2R 23718460 intron Sesn + chr2R_10_23715001 chr2R_23715001 RAL-352 466 chr2R 23726225 23726254 chr2R 23726314 23726343 6 89 3.0 5.5 4.2 1.2 118 chr2R 23726225 intron Sesn + chr2R 23726284 intron Sesn + chr2R 23726343 intron Sesn + chr2R_6_23725001 chr2R_23725001 RAL-352 467 chr2R 23986516 23986536 chr2R 23986596 23986615 5 79 3.0 4.0 3.5 1.1 99 chr2R 23986516 intron Phm - chr2R 23986566 intron Phm - chr2R 23986615 intron,5` UTR Phm -,CG30178 + chr2R_5_23985001 chr2R_23985001 RAL-352 468 chr2R 24031383 24031395 chr2R 24031467 24031479 4 84 3.0 1.5 2.2 1.2 96 chr2R 24031383 5` UTR CG30172 - chr2R 24031431 intergenic CG30172 -,Chi - chr2R 24031479 intergenic CG30172 -,Chi - chr2R_4_24030001 chr2R_24030001 RAL-352 469 chr2R 24045872 24045904 chr2R 24045956 24045988 12 82 3.0 2.5 2.8 3.2 116 chr2R 24045872 intron tsr - chr2R 24045930 intron tsr - chr2R 24045988 intron tsr - chr2R_12_24045001 chr2R_24045001 RAL-352 470 chr2R 24282279 24282300 chr2R 24282344 24282378 6 68 3.0 2.0 2.5 1.7 99 chr2R 24282279 intron nvy + chr2R 24282328 intron nvy + chr2R 24282378 intron nvy + chr2R_6_24280001 chr2R_24280001 RAL-352 471 chr2R 24323619 24323652 chr2R 24323712 24323743 15 91 4.0 6.0 5.0 2.5 124 chr2R 24323619 intergenic not near genes chr2R 24323681 intergenic not near genes chr2R 24323743 intergenic not near genes chr2R_15_24320001 chr2R_24320001 RAL-352 472 chr2R 24353434 24353453 chr2R 24361791 24361812 roo 4 8356 3.5 6.0 4.8 0.7 8378 chr2R 24353434 intron,intron bs +,CR44811 - chr2R 24357623 intron,intron bs +,CR44811 - chr2R 24361812 intron,intron bs +,CR44811 - chr2R_4_24355001 chr2R_24355001 RAL-352 473 chr2R 24383829 24383857 chr2R 24383909 24383916 11 79 2.0 2.0 2.0 3.7 87 chr2R 24383829 intron mAChR-A - chr2R 24383872 intron mAChR-A - chr2R 24383916 intron mAChR-A - chr2R_11_24380001 chr2R_24380001 RAL-352 474 chr2R 24509317 24509337 chr2R 24509402 24509414 7 83 1.5 7.0 4.2 1.3 97 chr2R 24509317 intergenic Letm1 - chr2R 24509366 intergenic Letm1 - chr2R 24509414 intergenic Letm1 - chr2R_7_24505001 chr2R_24505001 RAL-352 475 chr2R 24542612 24542625 chr2R 24542696 24542710 5 91 1.0 0.5 0.8 2.8 98 chr2R 24542612 intron,intron CG4622 -,ITP + chr2R 24542661 intron,intron CG4622 -,ITP + chr2R 24542710 intron,intron CG4622 -,ITP + chr2R_5_24540001 chr2R_24540001 RAL-352 476 chr2R 24630551 24630584 chr2R 24630750 24630783 8 198 1.5 1.0 1.2 3.6 232 chr2R 24630551 intron CG13594 - chr2R 24630667 intron CG13594 - chr2R 24630783 intron CG13594 - chr2R_8_24630001 chr2R_24630001 RAL-352 477 chr2R 24647606 24647614 chr2R 24655161 24655170 412 5 7554 0.0 5.0 2.5 1.4 7564 chr2R 24647606 intergenic not near genes chr2R 24651388 intergenic not near genes chr2R 24655170 intergenic not near genes chr2R_5_24650001 chr2R_24650001 RAL-352 478 chr2R 24722369 24722393 chr2R 24722450 24722469 9 80 2.0 3.0 2.5 2.6 100 chr2R 24722369 intron Mid1 - chr2R 24722419 intron Mid1 - chr2R 24722469 intron Mid1 - chr2R_9_24720001 chr2R_24720001 RAL-352 479 chr2R 24727890 24727917 chr2R 24735395 24735425 mdg1 9 7503 1.5 3.5 2.5 2.6 7535 chr2R 24727890 intron Mid1 - chr2R 24731658 intron Mid1 - chr2R 24735425 intron Mid1 - chr2R_9_24730001 chr2R_24730001 RAL-352 480 chr2R 24747260 24747279 chr2R 24747334 24747359 4 78 3.0 2.5 2.8 1.1 99 chr2R 24747260 intron CG30421 + chr2R 24747310 intron CG30421 + chr2R 24747359 intron CG30421 + chr2R_4_24745001 chr2R_24745001 RAL-352 481 chr2R 24763634 24763640 chr2R 24765586 24765616 G2 4 1967 5.0 6.5 5.8 0.6 1982 chr2R 24763634 exon CG3894 + chr2R 24764625 intron CG3894 + chr2R 24765616 exon CG3894 + chr2R_4_24760001 chr2R_24760001 RAL-352 482 chr2R 24768000 24768021 chr2R 24768077 24768091 9 81 1.5 1.5 1.5 3.6 91 chr2R 24768000 5` UTR GstE12 - chr2R 24768046 5` UTR GstE12 - chr2R 24768091 5` UTR GstE12 - chr2R_9_24765001 chr2R_24765001 RAL-352 483 chr2R 25018713 25018744 chr2R 25018876 25018907 7 163 5.0 4.0 4.5 1.3 194 chr2R 25018713 intron uzip + chr2R 25018810 intron uzip + chr2R 25018907 intron uzip + chr2R_7_25015001 chr2R_25015001 RAL-352 484 chr2R 25101284 25101299 chr2R 25101378 25101401 5 100 3.5 0.5 2.0 1.7 117 chr2R 25101284 intron lov - chr2R 25101342 intron lov - chr2R 25101401 intron lov - chr2R_5_25100001 chr2R_25100001 RAL-352 485 chr2R 25102541 25102543 chr2R 25102710 25102712 4 169 4.0 7.0 5.5 0.6 171 chr2R 25102541 intron lov - chr2R 25102626 intron lov - chr2R 25102712 intron lov - chr2R_4_25100001 chr2R_25100001 RAL-352 486 chr2R 25104788 25104808 chr2R 25104913 25104932 9 124 3.0 4.0 3.5 2.0 144 chr2R 25104788 intron lov - chr2R 25104860 intron lov - chr2R 25104932 intron lov - chr2R_9_25100001 chr2R_25100001 RAL-352 487 chr2R 25131014 25131046 chr2R 25131090 25131108 5 72 1.5 2.5 2.0 1.7 94 chr2R 25131014 intron lov - chr2R 25131061 intron lov - chr2R 25131108 intron lov - chr2R_5_25130001 chr2R_25130001 RAL-352 488 chr3L 52921 52939 chr3L 53002 53023 9 83 0.5 4.5 2.5 2.6 102 chr3L 52921 intergenic not near genes chr3L 52972 intergenic not near genes chr3L 53023 intergenic not near genes chr3L_9_50001 chr3L_50001 RAL-352 489 chr3L 68980 69011 chr3L 69066 69079 4 82 4.0 1.5 2.8 1.1 99 chr3L 68980 3` UTR Lsp1gamma + chr3L 69030 intergenic Lsp1gamma +,CR44510 + chr3L 69079 intergenic CR44510 +,Lsp1gamma + chr3L_4_65001 chr3L_65001 RAL-352 490 chr3L 110214 110226 chr3L 119380 119393 roo 4 9167 2.0 3.0 2.5 1.1 9179 chr3L 110214 intergenic not near genes chr3L 114804 intergenic not near genes chr3L 119393 intergenic not near genes chr3L_4_110001 chr3L_110001 RAL-352 491 chr3L 291014 291053 chr3L 291328 291330 9 304 5.0 4.5 4.8 1.6 316 chr3L 291014 exon RhoGEF3 + chr3L 291172 intron RhoGEF3 + chr3L 291330 exon RhoGEF3 + chr3L_9_290001 chr3L_290001 RAL-352 492 chr3L 338825 338840 chr3L 338900 338934 4 89 1.5 3.0 2.2 1.2 109 chr3L 338825 intron,intron Ptpmeg +,mthl10 - chr3L 338880 intron,intron Ptpmeg +,mthl10 - chr3L 338934 intron,intron Ptpmeg +,mthl10 - chr3L_4_335001 chr3L_335001 RAL-352 493 chr3L 363155 363189 chr3L 363259 363293 8 102 3.0 1.5 2.2 2.5 138 chr3L 363155 exon CG1233 + chr3L 363224 exon CG1233 + chr3L 363293 exon CG1233 + chr3L_8_360001 chr3L_360001 RAL-352 494 chr3L 366207 366227 chr3L 366439 366460 7 232 4.5 0.0 2.2 2.2 253 chr3L 366207 exon CG13884 - chr3L 366334 5` UTR CG13884 - chr3L 366460 intergenic CG13884 -,trh - chr3L_7_365001 chr3L_365001 RAL-352 495 chr3L 402687 402717 chr3L 409740 409769 297 17 7049 6.0 3.5 4.8 2.9 7082 chr3L 402687 intergenic not near genes chr3L 406228 intergenic not near genes chr3L 409769 intergenic not near genes chr3L_17_405001 chr3L_405001 RAL-352 496 chr3L 491650 491668 chr3L 491721 491750 6 80 2.0 3.5 2.8 1.6 100 chr3L 491650 intron klar - chr3L 491700 intron klar - chr3L 491750 intron klar - chr3L_6_490001 chr3L_490001 RAL-352 497 chr3L 534800 534806 chr3L 535056 535062 5 256 0.0 2.5 1.2 2.3 262 chr3L 534800 intron klar - chr3L 534931 intron klar - chr3L 535062 intron klar - chr3L_5_530001 chr3L_530001 RAL-352 498 chr3L 705896 705929 chr3L 705992 706025 6 95 1.0 0.0 0.5 4.0 129 chr3L 705896 intergenic CG13895 -,CR44514 + chr3L 705960 3` UTR CG13895 - chr3L 706025 3` UTR CG13895 - chr3L_6_705001 chr3L_705001 RAL-352 499 chr3L 746494 746525 chr3L 746579 746585 4 78 0.5 5.5 3.0 1.0 91 chr3L 746494 intron hng3 - chr3L 746540 intron hng3 - chr3L 746585 intron hng3 - chr3L_4_745001 chr3L_745001 RAL-352 500 chr3L 858001 858025 chr3L 866478 866486 Tirant 9 8470 4.0 2.5 3.2 2.1 8485 chr3L 858001 intergenic not near genes chr3L 862244 intergenic not near genes chr3L 866486 intergenic CG12502 + chr3L_9_860001 chr3L_860001 RAL-352 501 chr3L 925175 925201 chr3L 932601 932627 mdg1 10 7424 2.5 1.0 1.8 3.6 7452 chr3L 925175 intron Glut1 + chr3L 928901 intron Glut1 + chr3L 932627 intron Glut1 + chr3L_10_925001 chr3L_925001 RAL-352 502 chr3L 1000272 1000299 chr3L 1000354 1000361 7 80 2.5 5.5 4.0 1.4 89 chr3L 1000272 intron trio - chr3L 1000316 intron trio - chr3L 1000361 intron trio - chr3L_7_1000001 chr3L_1000001 RAL-352 503 chr3L 1015029 1015044 chr3L 1015141 1015156 8 112 4.5 5.0 4.8 1.4 127 chr3L 1015029 intron trio - chr3L 1015092 intron trio - chr3L 1015156 intron trio - chr3L_8_1015001 chr3L_1015001 RAL-352 504 chr3L 1154135 1154151 chr3L 1163280 1163300 roo 4 9148 2.0 2.0 2.0 1.3 9165 chr3L 1154135 intron bab2 - chr3L 1158718 intron bab2 - chr3L 1163300 intron bab2 - chr3L_4_1155001 chr3L_1155001 RAL-352 505 chr3L 1189630 1189658 chr3L 1189714 1189743 5 85 3.5 2.0 2.8 1.3 113 chr3L 1189630 5` UTR CG13912 + chr3L 1189686 5` UTR CG13912 + chr3L 1189743 5` UTR CG13912 + chr3L_5_1185001 chr3L_1185001 RAL-352 506 chr3L 1219597 1219623 chr3L 1227328 1227339 412 9 7730 3.0 7.0 5.0 1.5 7742 chr3L 1219597 intron mwh + chr3L 1223468 intron mwh + chr3L 1227339 intron mwh + chr3L_9_1220001 chr3L_1220001 RAL-352 507 chr3L 1347177 1347191 chr3L 1347241 1347269 4 69 5.0 4.0 4.5 0.7 92 chr3L 1347177 intron Ptp61F - chr3L 1347223 intron Ptp61F - chr3L 1347269 intron Ptp61F - chr3L_4_1345001 chr3L_1345001 RAL-352 508 chr3L 1364051 1364065 chr3L 1364133 1364145 7 84 0.0 5.0 2.5 2.0 94 chr3L 1364051 intron Ptp61F - chr3L 1364098 intron Ptp61F - chr3L 1364145 intron Ptp61F - chr3L_7_1360001 chr3L_1360001 RAL-352 509 chr3L 1385176 1385208 chr3L 1385264 1385296 10 86 1.5 2.0 1.8 3.6 120 chr3L 1385176 intron,intron Ptp61F -,ru + chr3L 1385236 intron,intron Ptp61F -,ru + chr3L 1385296 intron,intron Ptp61F -,ru + chr3L_10_1385001 chr3L_1385001 RAL-352 510 chr3L 1396741 1396759 chr3L 1396825 1396843 4 84 4.5 6.5 5.5 0.6 102 chr3L 1396741 intron Ptp61F - chr3L 1396792 intron Ptp61F - chr3L 1396843 intron Ptp61F - chr3L_4_1395001 chr3L_1395001 RAL-352 511 chr3L 1415773 1415807 chr3L 1415855 1415889 8 79 2.0 5.0 3.5 1.8 116 chr3L 1415773 intron Ptp61F - chr3L 1415831 intron Ptp61F - chr3L 1415889 intron Ptp61F - chr3L_8_1415001 chr3L_1415001 RAL-352 512 chr3L 1505999 1506026 chr3L 1513596 1513623 17.6 7 7596 3.0 3.0 3.0 1.8 7624 chr3L 1505999 intron,intron Psa +,cue - chr3L 1509811 intron,intron Psa +,cue - chr3L 1513623 intron,intron Psa +,cue - chr3L_7_1505001 chr3L_1505001 RAL-352 513 chr3L 1674344 1674344 chr3L 1674419 1674427 4 80 5.0 2.0 3.5 0.9 83 chr3L 1674344 intergenic CG7991 + chr3L 1674386 intergenic CG7991 + chr3L 1674427 intergenic CG7991 + chr3L_4_1670001 chr3L_1670001 RAL-352 514 chr3L 1726610 1726645 chr3L 1726690 1726724 5 77 0.0 1.5 0.8 2.8 114 chr3L 1726610 intron drpr - chr3L 1726667 intron drpr - chr3L 1726724 intron drpr - chr3L_5_1725001 chr3L_1725001 RAL-352 515 chr3L 1740856 1740867 chr3L 1741100 1741112 pogo 4 242 2.5 1.5 2.0 1.3 256 chr3L 1740856 intron Gk + chr3L 1740984 intron Gk + chr3L 1741112 intron Gk + chr3L_4_1740001 chr3L_1740001 RAL-352 516 chr3L 1924964 1924975 chr3L 1925102 1925113 5 138 3.0 2.0 2.5 1.4 149 chr3L 1924964 exon Dbx + chr3L 1925038 intron Dbx + chr3L 1925113 intron Dbx + chr3L_5_1925001 chr3L_1925001 RAL-352 517 chr3L 1988838 1988875 chr3L 1989017 1989054 23 176 2.0 4.0 3.0 5.8 216 chr3L 1988838 intergenic not near genes chr3L 1988946 intergenic not near genes chr3L 1989054 intergenic not near genes chr3L_23_1985001 chr3L_1985001 RAL-352 518 chr3L 2139206 2139224 chr3L 2139287 2139304 8 81 5.0 6.0 5.5 1.2 98 chr3L 2139206 intron zormin - chr3L 2139255 intron zormin - chr3L 2139304 intron zormin - chr3L_8_2135001 chr3L_2135001 RAL-352 519 chr3L 2168781 2168801 chr3L 2168866 2168890 8 88 4.5 2.0 3.2 1.9 109 chr3L 2168781 exon CG15879 - chr3L 2168836 intron CG15879 - chr3L 2168890 intron CG15879 - chr3L_8_2165001 chr3L_2165001 RAL-352 520 chr3L 2308009 2308031 chr3L 2308115 2308136 4 105 0.5 5.0 2.8 1.1 127 chr3L 2308009 intergenic not near genes chr3L 2308072 intergenic not near genes chr3L 2308136 intergenic not near genes chr3L_4_2305001 chr3L_2305001 RAL-352 521 chr3L 2380350 2380374 chr3L 2380427 2380451 6 76 2.5 2.5 2.5 1.7 101 chr3L 2380350 intergenic not near genes chr3L 2380400 intergenic not near genes chr3L 2380451 intergenic not near genes chr3L_6_2380001 chr3L_2380001 RAL-352 522 chr3L 2447531 2447537 chr3L 2456664 2456693 roo 6 9146 1.0 5.5 3.2 1.4 9162 chr3L 2447531 intron CG45186 + chr3L 2452112 intron CG45186 + chr3L 2456693 intron CG45186 + chr3L_6_2450001 chr3L_2450001 RAL-352 523 chr3L 2683944 2683977 chr3L 2684020 2684053 10 74 0.5 2.5 1.5 4.0 109 chr3L 2683944 intron Fife - chr3L 2683998 intron Fife - chr3L 2684053 intron Fife - chr3L_10_2680001 chr3L_2680001 RAL-352 524 chr3L 2707926 2707960 chr3L 2708013 2708047 17 85 1.5 4.0 2.8 4.5 121 chr3L 2707926 intron Fife - chr3L 2707986 intron Fife - chr3L 2708047 intron Fife - chr3L_17_2705001 chr3L_2705001 RAL-352 525 chr3L 2866342 2866368 chr3L 2866419 2866442 4 76 1.0 1.0 1.0 2.0 100 chr3L 2866342 intron CG43444 - chr3L 2866392 intron CG43444 - chr3L 2866442 intron CG43444 - chr3L_4_2865001 chr3L_2865001 RAL-352 526 chr3L 3027603 3027628 chr3L 3028603 3028613 4 993 2.5 3.0 2.8 1.1 1010 chr3L 3027603 intergenic not near genes chr3L 3028108 intergenic not near genes chr3L 3028613 intergenic not near genes chr3L_4_3025001 chr3L_3025001 RAL-352 527 chr3L 3061299 3061315 chr3L 3069867 3069898 Tirant 6 8578 1.5 3.5 2.5 1.7 8599 chr3L 3061299 intron CG32486 - chr3L 3065598 intron CG32486 - chr3L 3069898 intron CG32486 - chr3L_6_3065001 chr3L_3065001 RAL-352 528 chr3L 3075931 3075945 chr3L 3076001 3076021 6 75 2.0 3.5 2.8 1.6 90 chr3L 3075931 intron CG11486 + chr3L 3075976 intron CG11486 + chr3L 3076021 intron CG11486 + chr3L_6_3075001 chr3L_3075001 RAL-352 529 chr3L 3281446 3281475 chr3L 3281935 3281965 Doc 20 491 3.0 6.5 4.8 3.4 519 chr3L 3281446 intron CG12017 + chr3L 3281706 intron CG12017 + chr3L 3281965 intron CG12017 + chr3L_20_3280001 chr3L_3280001 RAL-352 530 chr3L 3475089 3475105 chr3L 3475533 3475549 jockey 4 444 1.5 7.5 4.5 0.7 460 chr3L 3475089 intron CG42324 + chr3L 3475319 intron CG42324 + chr3L 3475549 intron CG42324 + chr3L_4_3475001 chr3L_3475001 RAL-352 531 chr3L 3481574 3481591 chr3L 3481786 3481803 5 212 1.0 3.0 2.0 1.7 229 chr3L 3481574 intron CG42324 + chr3L 3481688 intron CG42324 + chr3L 3481803 intron CG42324 + chr3L_5_3480001 chr3L_3480001 RAL-352 532 chr3L 3484372 3484406 chr3L 3484548 3484581 7 175 0.5 1.5 1.0 3.5 209 chr3L 3484372 intron,exon CG42324 +,CG43074 - chr3L 3484476 intron,exon CG42324 +,CG43074 - chr3L 3484581 intron,exon CG42324 +,CG43074 - chr3L_7_3480001 chr3L_3480001 RAL-352 533 chr3L 3585596 3585624 chr3L 3585688 3585714 10 90 0.0 1.0 0.5 6.7 118 chr3L 3585596 intron Eip63E + chr3L 3585655 intron Eip63E + chr3L 3585714 intron Eip63E + chr3L_10_3585001 chr3L_3585001 RAL-352 534 chr3L 3601305 3601326 chr3L 3606616 3606637 copia 11 5309 3.5 1.5 2.5 3.1 5332 chr3L 3601305 intron Eip63E + chr3L 3603971 intron Eip63E + chr3L 3606637 intron Eip63E + chr3L_11_3600001 chr3L_3600001 RAL-352 535 chr3L 3921397 3921420 chr3L 3921656 3921684 11 261 2.0 4.0 3.0 2.8 287 chr3L 3921397 intron Eip63F-1 - chr3L 3921540 intron Eip63F-1 - chr3L 3921684 intron Eip63F-1 - chr3L_11_3920001 chr3L_3920001 RAL-352 536 chr3L 4032856 4032885 chr3L 4032947 4032976 11 88 4.5 3.0 3.8 2.3 120 chr3L 4032856 exon,5` UTR Gr64d +,Gr64e + chr3L 4032916 exon,5` UTR Gr64d +,Gr64e + chr3L 4032976 exon,5` UTR Gr64d +,Gr64e + chr3L_11_4030001 chr3L_4030001 RAL-352 537 chr3L 4195144 4195173 chr3L 4195248 4195263 7 97 4.0 7.0 5.5 1.1 119 chr3L 4195144 exon CG43367 + chr3L 4195204 intron CG43367 + chr3L 4195263 intron CG43367 + chr3L_7_4195001 chr3L_4195001 RAL-352 538 chr3L 4231155 4231183 chr3L 4231247 4231275 10 91 2.5 3.0 2.8 2.6 120 chr3L 4231155 intron ImpL2 - chr3L 4231215 intron ImpL2 - chr3L 4231275 intron ImpL2 - chr3L_10_4230001 chr3L_4230001 RAL-352 539 chr3L 4439137 4439159 chr3L 4439606 4439626 6 468 1.5 2.5 2.0 2.0 489 chr3L 4439137 intergenic not near genes chr3L 4439382 intergenic not near genes chr3L 4439626 intergenic not near genes chr3L_6_4435001 chr3L_4435001 RAL-352 540 chr3L 4599517 4599533 chr3L 4599654 4599670 7 137 0.0 4.5 2.2 2.2 153 chr3L 4599517 intron Src64B - chr3L 4599594 intron Src64B - chr3L 4599670 intron Src64B - chr3L_7_4595001 chr3L_4595001 RAL-352 541 chr3L 4748701 4748731 chr3L 4748792 4748820 8 91 2.0 0.5 1.2 3.6 119 chr3L 4748701 intron RhoGEF64C + chr3L 4748760 intron RhoGEF64C + chr3L 4748820 intron RhoGEF64C + chr3L_8_4745001 chr3L_4745001 RAL-352 542 chr3L 4784957 4784989 chr3L 4785166 4785198 5 208 0.0 1.0 0.5 3.3 241 chr3L 4784957 intron RhoGEF64C + chr3L 4785078 intron RhoGEF64C + chr3L 4785198 intron RhoGEF64C + chr3L_5_4785001 chr3L_4785001 RAL-352 543 chr3L 4858301 4858337 chr3L 4858391 4858426 13 84 5.0 3.5 4.2 2.5 125 chr3L 4858301 intergenic not near genes chr3L 4858364 intergenic not near genes chr3L 4858426 intergenic not near genes chr3L_13_4855001 chr3L_4855001 RAL-352 544 chr3L 4901134 4901157 chr3L 4907324 4907343 diver 4 6189 2.0 0.0 1.0 2.0 6209 chr3L 4901134 intergenic CG13704 + chr3L 4904238 intergenic not near genes chr3L 4907343 intergenic not near genes chr3L_4_4900001 chr3L_4900001 RAL-352 545 chr3L 5034170 5034192 chr3L 5043321 5043343 roo 4 9152 1.5 1.0 1.2 1.8 9173 chr3L 5034170 intron Con - chr3L 5038756 intron Con - chr3L 5043343 intron Con - chr3L_4_5035001 chr3L_5035001 RAL-352 546 chr3L 5059939 5059969 chr3L 5060027 5060057 5 86 3.0 2.5 2.8 1.3 118 chr3L 5059939 intron Con - chr3L 5059998 intron Con - chr3L 5060057 intron Con - chr3L_5_5055001 chr3L_5055001 RAL-352 547 chr3L 5212245 5212264 chr3L 5212324 5212327 8 78 5.0 1.0 3.0 2.0 82 chr3L 5212245 intron shep - chr3L 5212286 intron shep - chr3L 5212327 intron shep - chr3L_8_5210001 chr3L_5210001 RAL-352 548 chr3L 5209542 5209558 chr3L 5215467 5215492 4 5927 7.0 2.0 4.5 0.7 5950 chr3L 5209542 intron shep - chr3L 5212517 intron shep - chr3L 5215492 intron shep - chr3L_4_5210001 chr3L_5210001 RAL-352 549 chr3L 5223420 5223450 chr3L 5223497 5223532 4 75 2.0 0.5 1.2 1.8 112 chr3L 5223420 intron shep - chr3L 5223476 intron shep - chr3L 5223532 intron shep - chr3L_4_5220001 chr3L_5220001 RAL-352 550 chr3L 5346369 5346401 chr3L 5346461 5346493 7 86 3.5 1.5 2.5 2.0 124 chr3L 5346369 5` UTR lama - chr3L 5346431 5` UTR lama - chr3L 5346493 5` UTR lama - chr3L_7_5345001 chr3L_5345001 RAL-352 551 chr3L 5388201 5388230 chr3L 5388525 5388531 9 320 4.0 3.0 3.5 2.0 330 chr3L 5388201 intergenic not near genes chr3L 5388366 intergenic not near genes chr3L 5388531 intergenic not near genes chr3L_9_5385001 chr3L_5385001 RAL-352 552 chr3L 5727186 5727198 chr3L 5727650 5727661 6 467 3.5 3.0 3.2 1.4 475 chr3L 5727186 intron sif + chr3L 5727424 intron sif + chr3L 5727661 intron sif + chr3L_6_5725001 chr3L_5725001 RAL-352 553 chr3L 5910034 5910058 chr3L 5910275 5910299 pogo 9 241 0.5 3.5 2.0 3.0 265 chr3L 5910034 intron CG13288 + chr3L 5910166 intron CG13288 + chr3L 5910299 intron CG13288 + chr3L_9_5910001 chr3L_5910001 RAL-352 554 chr3L 5926318 5926352 chr3L 5926502 5926511 BS 15 175 2.5 4.0 3.2 3.6 193 chr3L 5926318 intron Vap-33B + chr3L 5926414 intron Vap-33B + chr3L 5926511 intron Vap-33B + chr3L_15_5925001 chr3L_5925001 RAL-352 555 chr3L 5939704 5939710 chr3L 5939786 5939806 4 90 4.0 2.5 3.2 1.0 102 chr3L 5939704 intron CG33993 - chr3L 5939755 intron CG33993 - chr3L 5939806 intron CG33993 - chr3L_4_5935001 chr3L_5935001 RAL-352 556 chr3L 5980601 5980613 chr3L 5980684 5980699 4 84 4.0 4.5 4.2 0.8 98 chr3L 5980601 intergenic not near genes chr3L 5980650 intergenic not near genes chr3L 5980699 intergenic not near genes chr3L_4_5980001 chr3L_5980001 RAL-352 557 chr3L 6052140 6052149 chr3L 6052226 6052235 4 84 0.0 3.0 1.5 1.6 95 chr3L 6052140 intergenic Jon65Aii +,Jon65Aiii + chr3L 6052188 intergenic Jon65Aii +,Jon65Aiii + chr3L 6052235 intergenic Jon65Aii + chr3L_4_6050001 chr3L_6050001 RAL-352 558 chr3L 6052654 6052665 chr3L 6052738 6052750 4 83 8.0 10.0 9.0 0.4 96 chr3L 6052654 exon Jon65Aii + chr3L 6052702 intron Jon65Aii + chr3L 6052750 exon Jon65Aii + chr3L_4_6050001 chr3L_6050001 RAL-352 559 chr3L 6220918 6220945 chr3L 6230065 6230082 roo 13 9148 4.0 4.0 4.0 2.6 9164 chr3L 6220918 5` UTR pncr008:3L + chr3L 6225500 intergenic not near genes chr3L 6230082 intergenic not near genes chr3L_13_6225001 chr3L_6225001 RAL-352 560 chr3L 6278215 6278225 chr3L 6278291 6278292 4 74 4.0 0.0 2.0 1.3 77 chr3L 6278215 intergenic not near genes chr3L 6278254 intergenic not near genes chr3L 6278292 intergenic not near genes chr3L_4_6275001 chr3L_6275001 RAL-352 561 chr3L 6351046 6351065 chr3L 6351117 6351138 9 75 2.5 3.5 3.0 2.2 92 chr3L 6351046 intron CG13300 - chr3L 6351092 intron CG13300 - chr3L 6351138 intron CG13300 - chr3L_9_6350001 chr3L_6350001 RAL-352 562 chr3L 6573670 6573689 chr3L 6573757 6573792 5 95 2.0 2.5 2.2 1.6 122 chr3L 6573670 intron,intron CG18769 +,jv - chr3L 6573731 intron,intron CG18769 +,jv - chr3L 6573792 intron,intron CG18769 +,jv - chr3L_5_6570001 chr3L_6570001 RAL-352 563 chr3L 6582769 6582794 chr3L 6582868 6582893 5 99 1.0 2.0 1.5 2.0 124 chr3L 6582769 intron,intron CG18769 +,jv - chr3L 6582831 intron,intron CG18769 +,jv - chr3L 6582893 intron,intron CG18769 +,jv - chr3L_5_6580001 chr3L_6580001 RAL-352 564 chr3L 6668966 6668993 chr3L 6669047 6669074 4 81 3.5 0.0 1.8 1.4 108 chr3L 6668966 intergenic not near genes chr3L 6669020 intergenic not near genes chr3L 6669074 intergenic not near genes chr3L_4_6665001 chr3L_6665001 RAL-352 565 chr3L 6855933 6855945 chr3L 6860717 6860729 Doc 5 4784 3.0 3.5 3.2 1.2 4796 chr3L 6855933 intergenic not near genes chr3L 6858331 intergenic not near genes chr3L 6860729 intergenic not near genes chr3L_5_6855001 chr3L_6855001 RAL-352 566 chr3L 6887519 6887548 chr3L 6895011 6895040 roo 5 7491 2.5 3.5 3.0 1.2 7521 chr3L 6887519 intergenic not near genes chr3L 6891280 intergenic not near genes chr3L 6895040 intergenic not near genes chr3L_5_6890001 chr3L_6890001 RAL-352 567 chr3L 6963567 6963599 chr3L 6963650 6963670 13 81 3.0 4.0 3.5 2.9 103 chr3L 6963567 intron sgl - chr3L 6963618 intron sgl - chr3L 6963670 intron sgl - chr3L_13_6960001 chr3L_6960001 RAL-352 568 chr3L 7057738 7057753 chr3L 7058542 7058557 4 804 4.5 1.5 3.0 1.0 819 chr3L 7057738 intergenic not near genes chr3L 7058148 intergenic not near genes chr3L 7058557 intergenic CG8641 - chr3L_4_7055001 chr3L_7055001 RAL-352 569 chr3L 7100428 7100448 chr3L 7100515 7100530 4 84 1.0 2.5 1.8 1.4 102 chr3L 7100428 intron form3 + chr3L 7100479 intron form3 + chr3L 7100530 intron form3 + chr3L_4_7100001 chr3L_7100001 RAL-352 570 chr3L 7150885 7150901 chr3L 7150957 7150977 4 75 1.5 1.5 1.5 1.6 92 chr3L 7150885 intron corn - chr3L 7150931 intron corn - chr3L 7150977 intron corn - chr3L_4_7150001 chr3L_7150001 RAL-352 571 chr3L 7227375 7227398 chr3L 7227511 7227517 9 131 0.5 0.0 0.2 7.5 142 chr3L 7227375 intergenic not near genes chr3L 7227446 intergenic not near genes chr3L 7227517 intergenic not near genes chr3L_9_7225001 chr3L_7225001 RAL-352 572 chr3L 7299479 7299500 chr3L 7299605 7299608 10 122 3.5 5.0 4.2 1.9 129 chr3L 7299479 intron unc-13-4A - chr3L 7299544 intron unc-13-4A - chr3L 7299608 intron unc-13-4A - chr3L_10_7295001 chr3L_7295001 RAL-352 573 chr3L 7358297 7358319 chr3L 7359580 7359603 8 1282 20.0 21.5 20.8 0.4 1306 chr3L 7358297 exon pst - chr3L 7358950 exon pst - chr3L 7359603 intron pst - chr3L_8_7355001 chr3L_7355001 RAL-352 574 chr3L 7377322 7377344 chr3L 7380427 7380449 297 7 3103 0.5 2.5 1.5 2.8 3127 chr3L 7377322 intron SMSr - chr3L 7378886 intron SMSr - chr3L 7380449 intron SMSr - chr3L_7_7375001 chr3L_7375001 RAL-352 575 chr3L 7572284 7572296 chr3L 7572370 7572374 6 84 10.0 3.5 6.8 0.8 90 chr3L 7572284 intergenic not near genes chr3L 7572329 intergenic not near genes chr3L 7572374 intergenic not near genes chr3L_6_7570001 chr3L_7570001 RAL-352 576 chr3L 7572299 7572314 chr3L 7572369 7572387 10 79 3.5 3.5 3.5 2.2 88 chr3L 7572299 intergenic not near genes chr3L 7572343 intergenic not near genes chr3L 7572387 intergenic not near genes chr3L_10_7570001 chr3L_7570001 RAL-352 577 chr3L 7574215 7574239 chr3L 7574295 7574313 11 78 2.0 1.0 1.5 4.4 98 chr3L 7574215 intergenic not near genes chr3L 7574264 intergenic not near genes chr3L 7574313 intergenic not near genes chr3L_11_7570001 chr3L_7570001 RAL-352 578 chr3L 7576212 7576220 chr3L 7576300 7576306 4 87 4.5 3.5 4.0 0.8 94 chr3L 7576212 intergenic not near genes chr3L 7576259 intergenic not near genes chr3L 7576306 intergenic not near genes chr3L_4_7575001 chr3L_7575001 RAL-352 579 chr3L 7576237 7576242 chr3L 7576299 7576329 4 72 2.5 3.5 3.0 1.0 92 chr3L 7576237 intergenic not near genes chr3L 7576283 intergenic not near genes chr3L 7576329 intergenic not near genes chr3L_4_7575001 chr3L_7575001 RAL-352 580 chr3L 7591152 7591181 chr3L 7591237 7591271 4 89 1.5 2.5 2.0 1.3 119 chr3L 7591152 intergenic CG7716 - chr3L 7591212 intergenic CG7716 - chr3L 7591271 intergenic CG7716 - chr3L_4_7590001 chr3L_7590001 RAL-352 581 chr3L 7607800 7607811 chr3L 7608085 7608087 6 281 2.5 4.0 3.2 1.4 287 chr3L 7607800 intron CG33275 + chr3L 7607944 intron CG33275 + chr3L 7608087 intron CG33275 + chr3L_6_7605001 chr3L_7605001 RAL-352 582 chr3L 7793725 7793745 chr3L 7800773 7800797 297 4 7048 0.5 3.5 2.0 1.3 7072 chr3L 7793725 intron CG32369 - chr3L 7797261 intron CG32369 - chr3L 7800797 intron CG32369 - chr3L_4_7795001 chr3L_7795001 RAL-352 583 chr3L 7886522 7886541 chr3L 7889039 7889059 Stalker4 5 2518 1.0 2.0 1.5 2.0 2537 chr3L 7886522 intron CG32365 + chr3L 7887790 intron CG32365 + chr3L 7889059 intron CG32365 + chr3L_5_7885001 chr3L_7885001 RAL-352 584 chr3L 7985361 7985389 chr3L 7987689 7987710 NOF 6 2324 2.5 2.5 2.5 1.7 2349 chr3L 7985361 intron nmo + chr3L 7986536 intron nmo + chr3L 7987710 intron nmo + chr3L_6_7985001 chr3L_7985001 RAL-352 585 chr3L 8208131 8208152 chr3L 8208263 8208284 7 131 3.0 1.0 2.0 2.3 153 chr3L 8208131 intergenic not near genes chr3L 8208208 intergenic not near genes chr3L 8208284 intergenic not near genes chr3L_7_8205001 chr3L_8205001 RAL-352 586 chr3L 8243825 8243846 chr3L 8243908 8243922 6 81 2.0 3.0 2.5 1.7 97 chr3L 8243825 intron Dscam4 + chr3L 8243874 intron Dscam4 + chr3L 8243922 intron Dscam4 + chr3L_6_8240001 chr3L_8240001 RAL-352 587 chr3L 8273060 8273087 chr3L 8273159 8273186 5 99 2.5 1.5 2.0 1.7 126 chr3L 8273060 intron Dscam4 + chr3L 8273123 intron Dscam4 + chr3L 8273186 exon Dscam4 + chr3L_5_8270001 chr3L_8270001 RAL-352 588 chr3L 8295792 8295825 chr3L 8295950 8295981 10 157 4.0 3.0 3.5 2.2 189 chr3L 8295792 intergenic CG7201 - chr3L 8295886 intergenic not near genes chr3L 8295981 intergenic not near genes chr3L_10_8295001 chr3L_8295001 RAL-352 589 chr3L 8392769 8392778 chr3L 8392855 8392865 5 87 3.5 5.5 4.5 0.9 96 chr3L 8392769 intergenic Jon66Cii -,Jon66Ci + chr3L 8392817 intergenic Jon66Cii -,Jon66Ci + chr3L 8392865 exon Jon66Cii - chr3L_5_8390001 chr3L_8390001 RAL-352 590 chr3L 8658738 8658761 chr3L 8658826 8658858 6 98 1.0 6.5 3.8 1.2 120 chr3L 8658738 intergenic not near genes chr3L 8658798 intergenic not near genes chr3L 8658858 intergenic not near genes chr3L_6_8655001 chr3L_8655001 RAL-352 591 chr3L 8849213 8849243 chr3L 8849293 8849323 10 80 4.5 1.5 3.0 2.5 110 chr3L 8849213 intron dally + chr3L 8849268 intron dally + chr3L 8849323 intron dally + chr3L_10_8845001 chr3L_8845001 RAL-352 592 chr3L 9024512 9024537 chr3L 9024590 9024617 4 79 0.5 4.0 2.2 1.2 105 chr3L 9024512 intergenic not near genes chr3L 9024564 intergenic not near genes chr3L 9024617 intergenic not near genes chr3L_4_9020001 chr3L_9020001 RAL-352 593 chr3L 9076925 9076958 chr3L 9084485 9084518 412 14 7559 6.0 5.0 5.5 2.2 7593 chr3L 9076925 exon Tequila + chr3L 9080722 intron Tequila + chr3L 9084518 exon Tequila + chr3L_14_9080001 chr3L_9080001 RAL-352 594 chr3L 9130564 9130582 chr3L 9134318 9134343 412 4 3755 5.0 3.5 4.2 0.8 3779 chr3L 9130564 intergenic bol - chr3L 9132454 intergenic not near genes chr3L 9134343 intergenic Dhpr + chr3L_4_9130001 chr3L_9130001 RAL-352 595 chr3L 9219244 9219268 chr3L 9219916 9219919 jockey 11 666 6.5 2.5 4.5 2.0 675 chr3L 9219244 intergenic not near genes chr3L 9219582 intergenic not near genes chr3L 9219919 intergenic not near genes chr3L_11_9215001 chr3L_9215001 RAL-352 596 chr3L 9270617 9270646 chr3L 9278371 9278401 roo 8 7749 1.5 2.5 2.0 2.7 7784 chr3L 9270617 intron GluRIB + chr3L 9274509 intron GluRIB + chr3L 9278401 exon GluRIB + chr3L_8_9270001 chr3L_9270001 RAL-352 597 chr3L 9299422 9299442 chr3L 9299555 9299576 6 132 2.5 8.0 5.2 1.0 154 chr3L 9299422 intergenic not near genes chr3L 9299499 intergenic not near genes chr3L 9299576 intergenic not near genes chr3L_6_9295001 chr3L_9295001 RAL-352 598 chr3L 9348469 9348705 chr3L 9348971 9349063 7 480 0.0 0.0 0.0 7.0 594 chr3L 9348469 intergenic PGRP-LC + chr3L 9348766 intergenic PGRP-LC + chr3L 9349063 intergenic not near genes chr3L_7_9345001 chr3L_9345001 RAL-352 599 chr3L 9493626 9493645 chr3L 9493689 9493723 5 68 1.5 2.5 2.0 1.7 97 chr3L 9493626 intergenic not near genes chr3L 9493674 intergenic not near genes chr3L 9493723 intergenic not near genes chr3L_5_9490001 chr3L_9490001 RAL-352 600 chr3L 9519645 9519679 chr3L 9519738 9519770 9 92 5.5 3.0 4.2 1.7 125 chr3L 9519645 intron CG33700 - chr3L 9519708 intron CG33700 - chr3L 9519770 intron CG33700 - chr3L_9_9515001 chr3L_9515001 RAL-352 601 chr3L 9533776 9533786 chr3L 9541312 9541322 412 4 7547 2.5 4.0 3.2 1.0 7546 chr3L 9533776 intergenic not near genes chr3L 9537549 intergenic not near genes chr3L 9541322 intergenic not near genes chr3L_4_9535001 chr3L_9535001 RAL-352 602 chr3L 9548491 9548508 chr3L 9548564 9548577 7 72 3.5 2.0 2.8 1.8 86 chr3L 9548491 intron CG42673 + chr3L 9548534 intron CG42673 + chr3L 9548577 intron CG42673 + chr3L_7_9545001 chr3L_9545001 RAL-352 603 chr3L 9575909 9575944 chr3L 9580987 9581002 jockey 9 5075 4.5 4.0 4.2 1.7 5093 chr3L 9575909 intron CG42673 + chr3L 9578456 intron CG42673 + chr3L 9581002 intron CG42673 + chr3L_9_9575001 chr3L_9575001 RAL-352 604 chr3L 9639038 9639056 chr3L 9639123 9639141 4 85 0.0 2.0 1.0 2.0 103 chr3L 9639038 intron fry - chr3L 9639090 intron fry - chr3L 9639141 intron fry - chr3L_4_9635001 chr3L_9635001 RAL-352 605 chr3L 9809735 9809740 chr3L 9809807 9809817 4 73 6.5 4.5 5.5 0.6 82 chr3L 9809735 intergenic not near genes chr3L 9809776 intergenic not near genes chr3L 9809817 intergenic not near genes chr3L_4_9805001 chr3L_9805001 RAL-352 606 chr3L 10032555 10032568 chr3L 10032642 10032655 4 87 0.0 2.5 1.2 1.8 100 chr3L 10032555 intron dpr6 + chr3L 10032605 intron dpr6 + chr3L 10032655 intron dpr6 + chr3L_4_10030001 chr3L_10030001 RAL-352 607 chr3L 10286294 10286316 chr3L 10286363 10286366 4 67 1.5 4.0 2.8 1.1 72 chr3L 10286294 intergenic not near genes chr3L 10286330 intergenic not near genes chr3L 10286366 intergenic not near genes chr3L_4_10285001 chr3L_10285001 RAL-352 608 chr3L 10303199 10303219 chr3L 10303275 10303291 7 74 3.0 5.0 4.0 1.4 92 chr3L 10303199 intergenic not near genes chr3L 10303245 intergenic not near genes chr3L 10303291 intergenic not near genes chr3L_7_10300001 chr3L_10300001 RAL-352 609 chr3L 10308753 10308770 chr3L 10308830 10308836 7 74 5.0 6.0 5.5 1.1 83 chr3L 10308753 intergenic not near genes chr3L 10308794 intergenic not near genes chr3L 10308836 intergenic not near genes chr3L_7_10305001 chr3L_10305001 RAL-352 610 chr3L 10417581 10417605 chr3L 10417645 10417678 11 73 4.0 3.0 3.5 2.4 97 chr3L 10417581 intergenic not near genes chr3L 10417630 intergenic not near genes chr3L 10417678 intergenic not near genes chr3L_11_10415001 chr3L_10415001 RAL-352 611 chr3L 10532767 10532775 chr3L 10532822 10532854 5 74 0.5 1.5 1.0 2.5 87 chr3L 10532767 intron A2bp1 + chr3L 10532810 intron A2bp1 + chr3L 10532854 intron A2bp1 + chr3L_5_10530001 chr3L_10530001 RAL-352 612 chr3L 10613184 10613212 chr3L 10613477 10613507 5 295 0.0 2.5 1.2 2.3 323 chr3L 10613184 intergenic not near genes chr3L 10613346 intergenic not near genes chr3L 10613507 intergenic not near genes chr3L_5_10610001 chr3L_10610001 RAL-352 613 chr3L 10658076 10658212 chr3L 10658153 10658337 14 97 1.5 1.5 1.5 5.6 261 chr3L 10658076 intron CG32066 - chr3L 10658206 intron CG32066 - chr3L 10658337 intron CG32066 - chr3L_14_10655001 chr3L_10655001 RAL-352 614 chr3L 10745547 10745567 chr3L 10745627 10745647 6 79 1.0 0.5 0.8 3.3 100 chr3L 10745547 intergenic not near genes chr3L 10745597 intergenic not near genes chr3L 10745647 intergenic not near genes chr3L_6_10745001 chr3L_10745001 RAL-352 615 chr3L 10940070 10940101 chr3L 10940144 10940178 8 70 2.0 5.0 3.5 1.8 108 chr3L 10940070 intergenic not near genes chr3L 10940124 intergenic not near genes chr3L 10940178 intergenic not near genes chr3L_8_10940001 chr3L_10940001 RAL-352 616 chr3L 11052912 11052934 chr3L 11053004 11053027 12 90 3.5 4.5 4.0 2.4 115 chr3L 11052912 intergenic not near genes chr3L 11052970 intergenic not near genes chr3L 11053027 intergenic not near genes chr3L_12_11050001 chr3L_11050001 RAL-352 617 chr3L 11087062 11087084 chr3L 11088850 11088872 S-element 6 1788 1.5 1.0 1.2 2.7 1810 chr3L 11087062 intron JIL-1 - chr3L 11087967 intron JIL-1 - chr3L 11088872 intron JIL-1 - chr3L_6_11085001 chr3L_11085001 RAL-352 618 chr3L 11105304 11105309 chr3L 11107014 11107020 X-element 4 1710 4.0 1.5 2.8 1.1 1716 chr3L 11105304 intergenic not near genes chr3L 11106162 intergenic not near genes chr3L 11107020 3` UTR CG32073 - chr3L_4_11105001 chr3L_11105001 RAL-352 619 chr3L 11135780 11135801 chr3L 11135861 11135886 6 82 0.5 3.5 2.0 2.0 106 chr3L 11135780 intergenic CG32082 +,CG14143 + chr3L 11135833 intergenic CG32082 +,CG14143 + chr3L 11135886 intergenic CG32082 +,CG14143 + chr3L_6_11135001 chr3L_11135001 RAL-352 620 chr3L 11353139 11353152 chr3L 11353214 11353235 5 78 3.5 2.0 2.8 1.3 96 chr3L 11353139 intergenic not near genes chr3L 11353187 intergenic not near genes chr3L 11353235 intergenic not near genes chr3L_5_11350001 chr3L_11350001 RAL-352 621 chr3L 11678100 11678124 chr3L 11678187 11678211 8 86 0.5 3.5 2.0 2.7 111 chr3L 11678100 intron CG32085 - chr3L 11678156 intron CG32085 - chr3L 11678211 intron CG32085 - chr3L_8_11675001 chr3L_11675001 RAL-352 622 chr3L 11723082 11723111 chr3L 11727877 11727906 Doc 5 4795 2.0 0.5 1.2 2.3 4824 chr3L 11723082 3` UTR Bmcp + chr3L 11725494 intron Bmcp + chr3L 11727906 3` UTR Bmcp + chr3L_5_11725001 chr3L_11725001 RAL-352 623 chr3L 11729678 11729703 chr3L 11729754 11729776 5 75 2.0 3.5 2.8 1.3 98 chr3L 11729678 exon CG32088 + chr3L 11729727 intron CG32088 + chr3L 11729776 exon CG32088 + chr3L_5_11725001 chr3L_11725001 RAL-352 624 chr3L 11744018 11744040 chr3L 11744126 11744140 9 106 6.5 0.0 3.2 2.1 122 chr3L 11744018 exon CG6024 - chr3L 11744079 intron CG6024 - chr3L 11744140 intron CG6024 - chr3L_9_11740001 chr3L_11740001 RAL-352 625 chr3L 11840203 11840228 chr3L 11840431 11840458 11 228 3.5 1.5 2.5 3.1 255 chr3L 11840203 intergenic not near genes chr3L 11840330 intergenic not near genes chr3L 11840458 intergenic not near genes chr3L_11_11840001 chr3L_11840001 RAL-352 626 chr3L 11846395 11846411 chr3L 11846512 11846531 4 119 0.0 0.0 0.0 4.0 136 chr3L 11846395 intergenic not near genes chr3L 11846463 intergenic not near genes chr3L 11846531 intergenic not near genes chr3L_4_11845001 chr3L_11845001 RAL-352 627 chr3L 11849343 11849356 chr3L 11849443 11849456 9 98 1.0 4.0 2.5 2.6 113 chr3L 11849343 intergenic not near genes chr3L 11849400 intergenic not near genes chr3L 11849456 intergenic not near genes chr3L_9_11845001 chr3L_11845001 RAL-352 628 chr3L 11864564 11864580 chr3L 11865855 11865866 pogo 5 1292 4.0 2.0 3.0 1.2 1302 chr3L 11864564 intron CG44837 - chr3L 11865215 intron CG44837 - chr3L 11865866 intron CG44837 - chr3L_5_11865001 chr3L_11865001 RAL-352 629 chr3L 11916912 11916935 chr3L 11916993 11917024 13 86 1.0 3.5 2.2 4.1 112 chr3L 11916912 intron CG44837 - chr3L 11916968 intron CG44837 - chr3L 11917024 intron CG44837 - chr3L_13_11915001 chr3L_11915001 RAL-352 630 chr3L 11984566 11984594 chr3L 11984657 11984681 6 87 0.5 0.5 0.5 4.0 115 chr3L 11984566 intergenic CG6938 + chr3L 11984624 intergenic CG6938 + chr3L 11984681 intergenic CG6938 + chr3L_6_11980001 chr3L_11980001 RAL-352 631 chr3L 12089080 12089107 chr3L 12089160 12089187 9 80 2.5 1.5 2.0 3.0 107 chr3L 12089080 3` UTR CG17154 + chr3L 12089134 3` UTR CG17154 + chr3L 12089187 3` UTR CG17154 + chr3L_9_12085001 chr3L_12085001 RAL-352 632 chr3L 12092524 12092553 chr3L 12093936 12093966 6 1411 10.0 22.5 16.2 0.3 1442 chr3L 12092524 intergenic not near genes chr3L 12093245 intergenic not near genes chr3L 12093966 intergenic not near genes chr3L_6_12090001 chr3L_12090001 RAL-352 633 chr3L 12255212 12255222 chr3L 12255286 12255307 4 82 2.5 3.5 3.0 1.0 95 chr3L 12255212 intron app - chr3L 12255260 intron app - chr3L 12255307 intron app - chr3L_4_12255001 chr3L_12255001 RAL-352 634 chr3L 12353939 12353951 chr3L 12354010 12354039 4 82 2.5 3.0 2.8 1.1 100 chr3L 12353939 intergenic not near genes chr3L 12353989 intergenic not near genes chr3L 12354039 intergenic not near genes chr3L_4_12350001 chr3L_12350001 RAL-352 635 chr3L 12378572 12378601 chr3L 12378739 12378770 10 168 2.5 2.5 2.5 2.9 198 chr3L 12378572 intron Ncc69 - chr3L 12378671 intron Ncc69 - chr3L 12378770 intron Ncc69 - chr3L_10_12375001 chr3L_12375001 RAL-352 636 chr3L 12488416 12488436 chr3L 12488543 12488563 6 125 2.0 2.5 2.2 1.9 147 chr3L 12488416 intron CG10660 - chr3L 12488490 intron CG10660 - chr3L 12488563 exon CG10660 - chr3L_6_12485001 chr3L_12485001 RAL-352 637 chr3L 12493884 12493907 chr3L 12493977 12493996 8 92 0.5 3.0 1.8 2.9 112 chr3L 12493884 intron CG10657 - chr3L 12493940 intron CG10657 - chr3L 12493996 intron CG10657 - chr3L_8_12490001 chr3L_12490001 RAL-352 638 chr3L 12681696 12681725 chr3L 12682049 12682077 5 353 1.0 3.0 2.0 1.7 381 chr3L 12681696 intergenic not near genes chr3L 12681886 intergenic not near genes chr3L 12682077 intergenic not near genes chr3L_5_12680001 chr3L_12680001 RAL-352 639 chr3L 12808678 12808687 chr3L 12808760 12808767 4 82 0.5 2.5 1.5 1.6 89 chr3L 12808678 intron Sap130 + chr3L 12808722 intron,5` UTR Sap130 +,CG32110 + chr3L 12808767 intron,5` UTR Sap130 +,CG32110 + chr3L_4_12805001 chr3L_12805001 RAL-352 640 chr3L 12894800 12894821 chr3L 12894878 12894884 6 75 5.5 10.0 7.8 0.7 84 chr3L 12894800 intergenic CG14118 + chr3L 12894842 intergenic CG14118 + chr3L 12894884 intergenic CG14118 + chr3L_6_12890001 chr3L_12890001 RAL-352 641 chr3L 12919280 12919303 chr3L 12924763 12924776 Rt1c 7 5481 4.5 2.0 3.2 1.7 5496 chr3L 12919280 intergenic not near genes chr3L 12922028 intergenic not near genes chr3L 12924776 intergenic not near genes chr3L_7_12920001 chr3L_12920001 RAL-352 642 chr3L 12955130 12955157 chr3L 12955206 12955231 4 73 1.0 1.0 1.0 2.0 101 chr3L 12955130 intergenic CG10752 - chr3L 12955180 intergenic not near genes chr3L 12955231 intergenic not near genes chr3L_4_12955001 chr3L_12955001 RAL-352 643 chr3L 13069567 13069589 chr3L 13069645 13069668 7 78 0.0 2.0 1.0 3.5 101 chr3L 13069567 intergenic not near genes chr3L 13069618 intergenic not near genes chr3L 13069668 intergenic not near genes chr3L_7_13065001 chr3L_13065001 RAL-352 644 chr3L 13195996 13196009 chr3L 13196142 13196153 4 146 4.5 5.0 4.8 0.7 157 chr3L 13195996 intergenic not near genes chr3L 13196074 intergenic not near genes chr3L 13196153 intergenic not near genes chr3L_4_13195001 chr3L_13195001 RAL-352 645 chr3L 13257256 13257279 chr3L 13257338 13257360 9 82 2.0 4.0 3.0 2.2 104 chr3L 13257256 intron caps + chr3L 13257308 intron caps + chr3L 13257360 intron caps + chr3L_9_13255001 chr3L_13255001 RAL-352 646 chr3L 13311030 13311050 chr3L 13311111 13311131 6 80 4.0 5.5 4.8 1.0 101 chr3L 13311030 intergenic not near genes chr3L 13311080 intergenic not near genes chr3L 13311131 intergenic not near genes chr3L_6_13310001 chr3L_13310001 RAL-352 647 chr3L 13361975 13361992 chr3L 13362059 13362086 6 88 1.5 3.5 2.5 1.7 111 chr3L 13361975 intergenic not near genes chr3L 13362030 intergenic not near genes chr3L 13362086 intergenic not near genes chr3L_6_13360001 chr3L_13360001 RAL-352 648 chr3L 13374243 13374271 chr3L 13374332 13374359 5 86 0.5 0.0 0.2 4.2 116 chr3L 13374243 intergenic not near genes chr3L 13374301 intergenic not near genes chr3L 13374359 intergenic not near genes chr3L_5_13370001 chr3L_13370001 RAL-352 649 chr3L 13525155 13525190 chr3L 13532951 13532963 roo 15 7791 2.0 4.0 3.0 3.8 7808 chr3L 13525155 intergenic not near genes chr3L 13529059 intergenic not near genes chr3L 13532963 intergenic not near genes chr3L_15_13525001 chr3L_13525001 RAL-352 650 chr3L 13559966 13559995 chr3L 13560051 13560081 8 85 0.5 5.0 2.8 2.1 115 chr3L 13559966 intron bru-3 - chr3L 13560024 intron bru-3 - chr3L 13560081 intron bru-3 - chr3L_8_13560001 chr3L_13560001 RAL-352 651 chr3L 13598216 13598244 chr3L 13598293 13598302 5 69 3.0 1.0 2.0 1.7 86 chr3L 13598216 intron bru-3 - chr3L 13598259 intron bru-3 - chr3L 13598302 intron bru-3 - chr3L_5_13595001 chr3L_13595001 RAL-352 652 chr3L 13610207 13610223 chr3L 13610300 13610319 5 95 2.0 1.5 1.8 1.8 112 chr3L 13610207 intron bru-3 - chr3L 13610263 intron bru-3 - chr3L 13610319 intron bru-3 - chr3L_5_13610001 chr3L_13610001 RAL-352 653 chr3L 13740038 13740054 chr3L 13740130 13740146 5 92 0.0 3.0 1.5 2.0 108 chr3L 13740038 intron bru-3 - chr3L 13740092 intron bru-3 - chr3L 13740146 intron bru-3 - chr3L_5_13740001 chr3L_13740001 RAL-352 654 chr3L 13769000 13769024 chr3L 13769086 13769109 5 84 0.0 2.5 1.2 2.3 109 chr3L 13769000 intron bru-3 - chr3L 13769054 intron bru-3 - chr3L 13769109 intron bru-3 - chr3L_5_13765001 chr3L_13765001 RAL-352 655 chr3L 13828699 13828714 chr3L 13828775 13828790 4 75 0.0 2.5 1.2 1.8 91 chr3L 13828699 intergenic not near genes chr3L 13828744 intergenic not near genes chr3L 13828790 intergenic not near genes chr3L_4_13825001 chr3L_13825001 RAL-352 656 chr3L 14185157 14185185 chr3L 14185233 14185261 4 76 1.5 2.0 1.8 1.4 104 chr3L 14185157 intergenic not near genes chr3L 14185209 intergenic not near genes chr3L 14185261 intergenic not near genes chr3L_4_14185001 chr3L_14185001 RAL-352 657 chr3L 14196424 14196445 chr3L 14196509 14196530 4 83 1.0 3.5 2.2 1.2 106 chr3L 14196424 intron nuf + chr3L 14196477 intron nuf + chr3L 14196530 intron nuf + chr3L_4_14195001 chr3L_14195001 RAL-352 658 chr3L 14295981 14296015 chr3L 14296467 14296501 roo 8 485 3.0 0.0 1.5 3.2 520 chr3L 14295981 intron fz + chr3L 14296241 intron fz + chr3L 14296501 intron fz + chr3L_8_14295001 chr3L_14295001 RAL-352 659 chr3L 14356527 14356553 chr3L 14356599 14356633 10 77 2.0 2.0 2.0 3.3 106 chr3L 14356527 intron fz + chr3L 14356580 intron fz + chr3L 14356633 intron fz + chr3L_10_14355001 chr3L_14355001 RAL-352 660 chr3L 14411865 14411890 chr3L 14411943 14411969 7 78 1.5 2.5 2.0 2.3 104 chr3L 14411865 intron CG3919 + chr3L 14411917 intron CG3919 + chr3L 14411969 intron CG3919 + chr3L_7_14410001 chr3L_14410001 RAL-352 661 chr3L 14437889 14437910 chr3L 14437981 14438003 6 91 1.5 3.5 2.5 1.7 114 chr3L 14437889 intron bbg - chr3L 14437946 intron bbg - chr3L 14438003 intron bbg - chr3L_6_14435001 chr3L_14435001 RAL-352 662 chr3L 14468449 14468475 chr3L 14473655 14473681 copia 5 5205 1.5 1.5 1.5 2.0 5232 chr3L 14468449 intron bbg - chr3L 14471065 intron bbg - chr3L 14473681 intron bbg - chr3L_5_14470001 chr3L_14470001 RAL-352 663 chr3L 14487617 14487645 chr3L 14487693 14487696 4 69 0.5 0.0 0.2 3.3 79 chr3L 14487617 intron bbg - chr3L 14487656 intron bbg - chr3L 14487696 intron bbg - chr3L_4_14485001 chr3L_14485001 RAL-352 664 chr3L 14522107 14522117 chr3L 14522206 14522214 4 98 2.0 2.0 2.0 1.3 107 chr3L 14522107 intron bbg - chr3L 14522160 intron bbg - chr3L 14522214 intron bbg - chr3L_4_14520001 chr3L_14520001 RAL-352 665 chr3L 14638334 14638366 chr3L 14638429 14638454 10 93 2.5 3.0 2.8 2.6 120 chr3L 14638334 intron dlp + chr3L 14638394 intron dlp + chr3L 14638454 intron dlp + chr3L_10_14635001 chr3L_14635001 RAL-352 666 chr3L 14721185 14721202 chr3L 14723024 14723040 Rt1c 6 1840 6.0 4.0 5.0 1.0 1855 chr3L 14721185 intron ome + chr3L 14722112 intron ome + chr3L 14723040 intron ome + chr3L_6_14720001 chr3L_14720001 RAL-352 667 chr3L 14922101 14922133 chr3L 14922209 14922236 11 105 3.0 0.5 1.8 3.9 135 chr3L 14922101 intron DCX-EMAP + chr3L 14922168 intron DCX-EMAP + chr3L 14922236 intron DCX-EMAP + chr3L_11_14920001 chr3L_14920001 RAL-352 668 chr3L 15085053 15085081 chr3L 15086219 15086247 1360 5 1164 0.5 1.0 0.8 2.8 1194 chr3L 15085053 intron cp309 - chr3L 15085650 intron cp309 - chr3L 15086247 intron cp309 - chr3L_5_15085001 chr3L_15085001 RAL-352 669 chr3L 15219747 15219774 chr3L 15219829 15219856 4 78 2.0 3.5 2.8 1.1 109 chr3L 15219747 intergenic not near genes chr3L 15219802 intergenic not near genes chr3L 15219856 intergenic not near genes chr3L_4_15215001 chr3L_15215001 RAL-352 670 chr3L 15406024 15406055 chr3L 15406107 15406138 5 83 1.0 4.5 2.8 1.3 114 chr3L 15406024 intergenic not near genes chr3L 15406081 intergenic not near genes chr3L 15406138 intergenic not near genes chr3L_5_15405001 chr3L_15405001 RAL-352 671 chr3L 15542325 15542354 chr3L 15542431 15542460 7 105 3.0 2.5 2.8 1.8 135 chr3L 15542325 intron CrebA + chr3L 15542392 intron CrebA + chr3L 15542460 intron CrebA + chr3L_7_15540001 chr3L_15540001 RAL-352 672 chr3L 15880607 15880625 chr3L 15880672 15880701 4 73 2.5 3.0 2.8 1.1 94 chr3L 15880607 intron pHCl - chr3L 15880654 intron pHCl - chr3L 15880701 intron pHCl - chr3L_4_15880001 chr3L_15880001 RAL-352 673 chr3L 15899237 15899261 chr3L 15899785 15899807 jockey 4 554 3.0 1.5 2.2 1.2 570 chr3L 15899237 intergenic pHCl - chr3L 15899522 intergenic pHCl - chr3L 15899807 intergenic sff - chr3L_4_15895001 chr3L_15895001 RAL-352 674 chr3L 15908238 15908257 chr3L 15908341 15908370 7 110 1.0 3.5 2.2 2.2 132 chr3L 15908238 intron sff - chr3L 15908304 intron sff - chr3L 15908370 intron sff - chr3L_7_15905001 chr3L_15905001 RAL-352 675 chr3L 16258386 16258406 chr3L 16258471 16258492 4 82 9.0 0.0 4.5 0.7 106 chr3L 16258386 intergenic not near genes chr3L 16258439 intergenic not near genes chr3L 16258492 intergenic not near genes chr3L_4_16255001 chr3L_16255001 RAL-352 676 chr3L 16364347 16364381 chr3L 16364436 16364471 7 89 4.0 2.0 3.0 1.8 124 chr3L 16364347 intergenic not near genes chr3L 16364409 intergenic Cpr72Eb + chr3L 16364471 intergenic Cpr72Eb + chr3L_7_16360001 chr3L_16360001 RAL-352 677 chr3L 16443857 16443870 chr3L 16446189 16446209 Doc 4 2338 0.5 2.5 1.5 1.6 2352 chr3L 16443857 intron,intron CG33158 +,dsx-c73A - chr3L 16445033 intron,intron CG33158 +,dsx-c73A - chr3L 16446209 intron,intron CG33158 +,dsx-c73A - chr3L_4_16445001 chr3L_16445001 RAL-352 678 chr3L 16494000 16494010 chr3L 16494515 16494526 jockey 7 515 2.5 8.5 5.5 1.1 526 chr3L 16494000 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494263 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494526 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_7_16490001 chr3L_16490001 RAL-352 679 chr3L 16540054 16540068 chr3L 16540142 16540145 5 86 1.0 2.5 1.8 1.8 91 chr3L 16540054 intron CG43373 - chr3L 16540100 intron CG43373 - chr3L 16540145 intron CG43373 - chr3L_5_16540001 chr3L_16540001 RAL-352 680 chr3L 16616513 16616539 chr3L 16621841 16621867 297 6 5328 0.0 0.0 0.0 6.0 5354 chr3L 16616513 3` UTR Abl - chr3L 16619190 3` UTR Abl - chr3L 16621867 3` UTR Abl - chr3L_6_16615001 chr3L_16615001 RAL-352 681 chr3L 16772494 16772505 chr3L 16772584 16772593 5 89 3.0 1.0 2.0 1.7 99 chr3L 16772494 intron Nrt + chr3L 16772544 intron Nrt + chr3L 16772593 intron Nrt + chr3L_5_16770001 chr3L_16770001 RAL-352 682 chr3L 16786977 16786998 chr3L 16787052 16787068 10 74 0.0 3.0 1.5 4.0 91 chr3L 16786977 intergenic Int6 - chr3L 16787022 intergenic Int6 - chr3L 16787068 intergenic Int6 - chr3L_10_16785001 chr3L_16785001 RAL-352 683 chr3L 16817882 16817892 chr3L 16818019 16818032 4 138 7.5 3.0 5.2 0.6 150 chr3L 16817882 intron,intron nudC +,CG13024 - chr3L 16817957 intron,intron nudC +,CG13024 - chr3L 16818032 intron,intron nudC +,CG13024 - chr3L_4_16815001 chr3L_16815001 RAL-352 684 chr3L 16818777 16818780 chr3L 16818831 16818853 6 71 1.0 4.0 2.5 1.7 76 chr3L 16818777 intron,intron nudC +,CG13024 - chr3L 16818815 intron,intron nudC +,CG13024 - chr3L 16818853 intron,intron nudC +,CG13024 - chr3L_6_16815001 chr3L_16815001 RAL-352 685 chr3L 16845024 16845041 chr3L 16845137 16845152 6 108 1.0 2.0 1.5 2.4 128 chr3L 16845024 intergenic CG9669 -,CG9715 +,TSG101 + chr3L 16845088 intergenic CG9669 -,CG9715 + chr3L 16845152 intergenic CG9669 -,CG9715 + chr3L_6_16845001 chr3L_16845001 RAL-352 686 chr3L 16945751 16945757 chr3L 16954880 16954890 roo 6 9135 7.0 1.5 4.2 1.2 9139 chr3L 16945751 exon Obp73a + chr3L 16950320 intergenic not near genes chr3L 16954890 5` UTR Nc73EF + chr3L_6_16950001 chr3L_16950001 RAL-352 687 chr3L 17026791 17026824 chr3L 17026872 17026905 8 78 2.5 3.0 2.8 2.1 114 chr3L 17026791 exon Fit2 + chr3L 17026848 3` UTR Fit2 + chr3L 17026905 3` UTR Fit2 + chr3L_8_17025001 chr3L_17025001 RAL-352 688 chr3L 17085016 17085037 chr3L 17094165 17094186 roo 6 9148 1.5 4.5 3.0 1.5 9170 chr3L 17085016 intron Rbp6 - chr3L 17089601 intron Rbp6 - chr3L 17094186 intron Rbp6 - chr3L_6_17085001 chr3L_17085001 RAL-352 689 chr3L 17139494 17139517 chr3L 17139630 17139656 11 132 4.0 3.5 3.8 2.3 162 chr3L 17139494 intron Rbp6 - chr3L 17139575 intron Rbp6 - chr3L 17139656 intron Rbp6 - chr3L_11_17135001 chr3L_17135001 RAL-352 690 chr3L 17149164 17149176 chr3L 17149245 17149257 4 78 4.5 0.0 2.2 1.2 93 chr3L 17149164 intron Rbp6 - chr3L 17149210 intron Rbp6 - chr3L 17149257 intron Rbp6 - chr3L_4_17145001 chr3L_17145001 RAL-352 691 chr3L 17164380 17164397 chr3L 17164516 17164538 4 140 0.5 0.0 0.2 3.3 158 chr3L 17164380 intron Rbp6 - chr3L 17164459 intron Rbp6 - chr3L 17164538 intron Rbp6 - chr3L_4_17160001 chr3L_17160001 RAL-352 692 chr3L 17510744 17510765 chr3L 17510828 17510844 6 83 3.0 4.0 3.5 1.3 100 chr3L 17510744 exon Oatp74D + chr3L 17510794 intron Oatp74D + chr3L 17510844 intron Oatp74D + chr3L_6_17510001 chr3L_17510001 RAL-352 693 chr3L 17612217 17612247 chr3L 17612302 17612331 12 80 5.0 4.5 4.8 2.1 114 chr3L 17612217 intron Eip74EF - chr3L 17612274 intron Eip74EF - chr3L 17612331 intron Eip74EF - chr3L_12_17610001 chr3L_17610001 RAL-352 694 chr3L 17837629 17837637 chr3L 17837717 17837725 7 87 6.5 4.0 5.2 1.1 96 chr3L 17837629 exon Grd + chr3L 17837677 intron Grd + chr3L 17837725 intron Grd + chr3L_7_17835001 chr3L_17835001 RAL-352 695 chr3L 17837643 17837649 chr3L 17837716 17837737 6 86 3.5 4.0 3.8 1.2 94 chr3L 17837643 exon Grd + chr3L 17837690 intron Grd + chr3L 17837737 intron Grd + chr3L_6_17835001 chr3L_17835001 RAL-352 696 chr3L 18221107 18221129 chr3L 18221178 18221197 5 74 0.0 0.0 0.0 5.0 90 chr3L 18221107 intergenic not near genes chr3L 18221152 intergenic not near genes chr3L 18221197 intergenic not near genes chr3L_5_18220001 chr3L_18220001 RAL-352 697 chr3L 18656188 18656217 chr3L 18656272 18656301 14 81 3.5 5.5 4.5 2.5 113 chr3L 18656188 intron MYPT-75D + chr3L 18656244 intron MYPT-75D + chr3L 18656301 intron MYPT-75D + chr3L_14_18655001 chr3L_18655001 RAL-352 698 chr3L 18721770 18721806 chr3L 18721861 18721890 8 85 2.5 2.5 2.5 2.3 120 chr3L 18721770 intergenic CG12477 - chr3L 18721830 intergenic CG12477 - chr3L 18721890 intergenic CG12477 - chr3L_8_18720001 chr3L_18720001 RAL-352 699 chr3L 18725283 18725294 chr3L 18725580 18725589 9 298 2.5 4.5 3.5 2.0 306 chr3L 18725283 intergenic not near genes chr3L 18725436 intergenic not near genes chr3L 18725589 intergenic not near genes chr3L_9_18725001 chr3L_18725001 RAL-352 700 chr3L 18833792 18833812 chr3L 18834956 18834976 1360 4 1164 0.0 2.5 1.2 1.8 1184 chr3L 18833792 intron Indy - chr3L 18834384 intron Indy - chr3L 18834976 intron Indy - chr3L_4_18830001 chr3L_18830001 RAL-352 701 chr3L 18839749 18839759 chr3L 18839826 18839839 6 82 1.0 2.5 1.8 2.1 90 chr3L 18839749 intron Indy - chr3L 18839794 intron Indy - chr3L 18839839 intron Indy - chr3L_6_18835001 chr3L_18835001 RAL-352 702 chr3L 18932285 18932303 chr3L 18932391 18932409 7 105 2.0 2.5 2.2 2.2 124 chr3L 18932285 intron CG32204 - chr3L 18932347 intron CG32204 - chr3L 18932409 intron CG32204 - chr3L_7_18930001 chr3L_18930001 RAL-352 703 chr3L 18969613 18969629 chr3L 18969691 18969719 11 88 2.5 3.5 3.0 2.8 106 chr3L 18969613 intergenic not near genes chr3L 18969666 intergenic not near genes chr3L 18969719 intergenic not near genes chr3L_11_18965001 chr3L_18965001 RAL-352 704 chr3L 19008851 19008877 chr3L 19009189 19009197 jockey 9 335 2.5 5.5 4.0 1.8 346 chr3L 19008851 intron nkd - chr3L 19009024 intron nkd - chr3L 19009197 intron nkd - chr3L_9_19005001 chr3L_19005001 RAL-352 705 chr3L 19082035 19082069 chr3L 19082137 19082146 10 98 4.0 3.0 3.5 2.2 111 chr3L 19082035 intron Mkp3 - chr3L 19082090 intron Mkp3 - chr3L 19082146 intron Mkp3 - chr3L_10_19080001 chr3L_19080001 RAL-352 706 chr3L 19117044 19117076 chr3L 19124489 19124523 mdg1 12 7443 4.5 1.5 3.0 3.0 7479 chr3L 19117044 intron CG14082 - chr3L 19120784 intron CG14082 - chr3L 19124523 intron CG14082 - chr3L_12_19120001 chr3L_19120001 RAL-352 707 chr3L 19182396 19182420 chr3L 19182477 19182501 7 80 1.5 2.0 1.8 2.5 105 chr3L 19182396 intron fz2 - chr3L 19182448 intron fz2 - chr3L 19182501 intron fz2 - chr3L_7_19180001 chr3L_19180001 RAL-352 708 chr3L 19208063 19208089 chr3L 19209437 19209447 Doc 5 1369 2.0 3.0 2.5 1.4 1384 chr3L 19208063 intron fz2 - chr3L 19208755 intron fz2 - chr3L 19209447 intron fz2 - chr3L_5_19205001 chr3L_19205001 RAL-352 709 chr3L 19269833 19269844 chr3L 19270023 19270048 5 198 2.0 8.5 5.2 0.8 215 chr3L 19269833 intron,exon CG14085 +,CG14088 - chr3L 19269940 intron,exon CG14085 +,CG14088 - chr3L 19270048 intron,exon CG14085 +,CG14088 - chr3L_5_19265001 chr3L_19265001 RAL-352 710 chr3L 19378287 19378312 chr3L 19378675 19378698 9 387 1.0 3.5 2.2 2.8 411 chr3L 19378287 intron CG32206 - chr3L 19378492 intron CG32206 - chr3L 19378698 intron CG32206 - chr3L_9_19375001 chr3L_19375001 RAL-352 711 chr3L 19417801 19417832 chr3L 19417879 19417912 5 76 1.5 1.5 1.5 2.0 111 chr3L 19417801 intergenic not near genes chr3L 19417856 intergenic not near genes chr3L 19417912 intergenic not near genes chr3L_5_19415001 chr3L_19415001 RAL-352 712 chr3L 19426748 19426777 chr3L 19426826 19426836 14 73 3.5 3.0 3.2 3.3 88 chr3L 19426748 intergenic not near genes chr3L 19426792 intergenic not near genes chr3L 19426836 intergenic not near genes chr3L_14_19425001 chr3L_19425001 RAL-352 713 chr3L 19527930 19527953 chr3L 19528009 19528030 8 77 1.5 0.5 1.0 4.0 100 chr3L 19527930 intergenic not near genes chr3L 19527980 intergenic not near genes chr3L 19528030 intergenic not near genes chr3L_8_19525001 chr3L_19525001 RAL-352 714 chr3L 20112190 20112219 chr3L 20112266 20112293 6 75 2.0 4.0 3.0 1.5 103 chr3L 20112190 intergenic CG14187 - chr3L 20112242 intergenic CG14187 - chr3L 20112293 3` UTR CG14187 - chr3L_6_20110001 chr3L_20110001 RAL-352 715 chr3L 20143079 20143115 chr3L 20143158 20143195 8 80 1.5 2.5 2.0 2.7 116 chr3L 20143079 intergenic not near genes chr3L 20143137 intergenic not near genes chr3L 20143195 intergenic not near genes chr3L_8_20140001 chr3L_20140001 RAL-352 716 chr3L 20257340 20257361 chr3L 20258460 20258481 pogo 4 1118 0.5 3.0 1.8 1.4 1141 chr3L 20257340 intron rdgC + chr3L 20257910 intron rdgC + chr3L 20258481 intron rdgC + chr3L_4_20255001 chr3L_20255001 RAL-352 717 chr3L 20262809 20262826 chr3L 20262909 20262938 10 110 3.0 4.5 3.8 2.1 129 chr3L 20262809 exon rdgC + chr3L 20262874 intron rdgC + chr3L 20262938 intron rdgC + chr3L_10_20260001 chr3L_20260001 RAL-352 718 chr3L 20386946 20386966 chr3L 20387048 20387064 7 101 4.0 4.5 4.2 1.3 118 chr3L 20386946 intron fbl + chr3L 20387005 intron fbl + chr3L 20387064 intron fbl + chr3L_7_20385001 chr3L_20385001 RAL-352 719 chr3L 20680941 20680968 chr3L 20681237 20681262 8 292 3.5 5.0 4.2 1.5 321 chr3L 20680941 intergenic not near genes chr3L 20681102 intergenic not near genes chr3L 20681262 intergenic not near genes chr3L_8_20680001 chr3L_20680001 RAL-352 720 chr3L 20821272 20821310 chr3L 20824740 20824768 NOF 4 3466 3.0 3.0 3.0 1.0 3496 chr3L 20821272 intron Pka-R1 + chr3L 20823020 intron Pka-R1 + chr3L 20824768 intron Pka-R1 + chr3L_4_20820001 chr3L_20820001 RAL-352 721 chr3L 20826380 20826392 chr3L 20826552 20826564 4 173 2.5 3.5 3.0 1.0 184 chr3L 20826380 intron Pka-R1 + chr3L 20826472 intron Pka-R1 + chr3L 20826564 intron Pka-R1 + chr3L_4_20825001 chr3L_20825001 RAL-352 722 chr3L 20849278 20849285 chr3L 20849357 20849364 4 79 2.5 4.0 3.2 1.0 86 chr3L 20849278 intron CG32432 - chr3L 20849321 intron CG32432 - chr3L 20849364 intron CG32432 - chr3L_4_20845001 chr3L_20845001 RAL-352 723 chr3L 20886826 20886848 chr3L 20886901 20886909 4 72 1.0 0.0 0.5 2.7 83 chr3L 20886826 intergenic CR44686 - chr3L 20886868 intergenic CR44686 - chr3L 20886909 intergenic CR44686 - chr3L_4_20885001 chr3L_20885001 RAL-352 724 chr3L 20902707 20902725 chr3L 20902774 20902797 4 76 3.0 2.5 2.8 1.1 90 chr3L 20902707 intergenic CR45383 + chr3L 20902752 intergenic CR45383 + chr3L 20902797 intergenic CR45383 + chr3L_4_20900001 chr3L_20900001 RAL-352 725 chr3L 20942594 20942602 chr3L 20942654 20942677 5 70 4.5 4.0 4.2 1.0 83 chr3L 20942594 intron fng - chr3L 20942636 intron fng - chr3L 20942677 intron fng - chr3L_5_20940001 chr3L_20940001 RAL-352 726 chr3L 20964616 20964648 chr3L 20964693 20964701 12 74 0.5 4.0 2.2 3.8 85 chr3L 20964616 3` UTR CG12983 - chr3L 20964658 3` UTR CG12983 - chr3L 20964701 3` UTR CG12983 - chr3L_12_20960001 chr3L_20960001 RAL-352 727 chr3L 20986759 20986787 chr3L 20986837 20986865 11 75 6.0 3.0 4.5 2.0 106 chr3L 20986759 intergenic not near genes chr3L 20986812 intergenic not near genes chr3L 20986865 intergenic not near genes chr3L_11_20985001 chr3L_20985001 RAL-352 728 chr3L 21082213 21082233 chr3L 21082289 21082311 5 77 0.0 4.5 2.2 1.6 98 chr3L 21082213 intron ko - chr3L 21082262 intron ko - chr3L 21082311 intron ko - chr3L_5_21080001 chr3L_21080001 RAL-352 729 chr3L 21229185 21229216 chr3L 21229271 21229303 7 81 1.0 3.5 2.2 2.2 118 chr3L 21229185 intron Eip78C + chr3L 21229244 intron Eip78C + chr3L 21229303 intron Eip78C + chr3L_7_21225001 chr3L_21225001 RAL-352 730 chr3L 21236632 21236658 chr3L 21236718 21236732 5 80 3.5 0.0 1.8 1.8 100 chr3L 21236632 intron Eip78C + chr3L 21236682 intron Eip78C + chr3L 21236732 intron Eip78C + chr3L_5_21235001 chr3L_21235001 RAL-352 731 chr3L 21243748 21243762 chr3L 21251311 21251318 412 6 7560 3.0 2.5 2.8 1.6 7570 chr3L 21243748 intron Eip78C + chr3L 21247533 intron Eip78C + chr3L 21251318 intron Eip78C + chr3L_6_21245001 chr3L_21245001 RAL-352 732 chr3L 21295771 21295798 chr3L 21296192 21296213 9 418 2.5 2.5 2.5 2.6 442 chr3L 21295771 exon Cpr78Cb + chr3L 21295992 exon Cpr78Cb + chr3L 21296213 3` UTR Cpr78Cb + chr3L_9_21295001 chr3L_21295001 RAL-352 733 chr3L 21301733 21301760 chr3L 21301819 21301846 11 84 3.5 1.5 2.5 3.1 113 chr3L 21301733 5` UTR CR45432 + chr3L 21301790 5` UTR,3` UTR CR45432 +,CG11309 - chr3L 21301846 5` UTR,3` UTR CR45432 +,CG11309 - chr3L_11_21300001 chr3L_21300001 RAL-352 734 chr3L 21362855 21362886 chr3L 21362939 21362969 9 82 1.5 2.5 2.0 3.0 114 chr3L 21362855 intergenic not near genes chr3L 21362912 intergenic not near genes chr3L 21362969 intergenic not near genes chr3L_9_21360001 chr3L_21360001 RAL-352 735 chr3L 21395152 21395175 chr3L 21395240 21395263 9 85 2.5 3.5 3.0 2.2 111 chr3L 21395152 intron rgn + chr3L 21395208 intron rgn + chr3L 21395263 intron rgn + chr3L_9_21395001 chr3L_21395001 RAL-352 736 chr3L 21406994 21407026 chr3L 21407073 21407094 7 77 2.5 0.0 1.2 3.2 100 chr3L 21406994 intron rgn + chr3L 21407044 intron rgn + chr3L 21407094 intron rgn + chr3L_7_21405001 chr3L_21405001 RAL-352 737 chr3L 21498833 21498870 chr3L 21500468 21500505 1360 10 1627 2.5 2.5 2.5 2.9 1672 chr3L 21498833 intron Glg1 - chr3L 21499669 intron Glg1 - chr3L 21500505 intron Glg1 - chr3L_10_21495001 chr3L_21495001 RAL-352 738 chr3L 21639193 21639213 chr3L 21639279 21639299 5 83 1.0 5.5 3.2 1.2 106 chr3L 21639193 intergenic CG32444 +,CG32445 + chr3L 21639246 intergenic CG32445 +,CG32444 + chr3L 21639299 intergenic CG32445 +,CG32444 + chr3L_5_21635001 chr3L_21635001 RAL-352 739 chr3L 21749316 21749352 chr3L 21754476 21754494 Doc 12 5151 2.5 4.5 3.5 2.7 5178 chr3L 21749316 intron Syn1 - chr3L 21751905 intron Syn1 - chr3L 21754494 intron Syn1 - chr3L_12_21750001 chr3L_21750001 RAL-352 740 chr3L 21766945 21766956 chr3L 21767212 21767233 6 274 2.5 5.5 4.0 1.2 288 chr3L 21766945 intron Syn1 - chr3L 21767089 intron Syn1 - chr3L 21767233 intron Syn1 - chr3L_6_21765001 chr3L_21765001 RAL-352 741 chr3L 21840836 21840867 chr3L 21840960 21840990 14 121 4.5 3.5 4.0 2.8 154 chr3L 21840836 intron P5CDh1 - chr3L 21840913 intron P5CDh1 - chr3L 21840990 intron P5CDh1 - chr3L_14_21840001 chr3L_21840001 RAL-352 742 chr3L 21950338 21950356 chr3L 21950411 21950433 16 75 3.5 5.5 4.5 2.9 95 chr3L 21950338 exon CG7448 + chr3L 21950386 exon CG7448 + chr3L 21950433 intron CG7448 + chr3L_16_21950001 chr3L_21950001 RAL-352 743 chr3L 21975689 21975712 chr3L 21975923 21975943 5 233 1.5 3.0 2.2 1.6 254 chr3L 21975689 intron CG7470 + chr3L 21975816 intron CG7470 + chr3L 21975943 intron CG7470 + chr3L_5_21975001 chr3L_21975001 RAL-352 744 chr3L 21994440 21994467 chr3L 21994521 21994548 6 81 2.0 1.0 1.5 2.4 108 chr3L 21994440 intergenic not near genes chr3L 21994494 intergenic not near genes chr3L 21994548 intergenic not near genes chr3L_6_21990001 chr3L_21990001 RAL-352 745 chr3L 22008857 22008882 chr3L 22008929 22008931 4 65 3.0 2.0 2.5 1.1 74 chr3L 22008857 intergenic not near genes chr3L 22008894 intergenic not near genes chr3L 22008931 intergenic not near genes chr3L_4_22005001 chr3L_22005001 RAL-352 746 chr3L 22099676 22099705 chr3L 22105862 22105890 3S18 4 6181 2.0 1.0 1.5 1.6 6214 chr3L 22099676 intergenic not near genes chr3L 22102783 intergenic not near genes chr3L 22105890 intergenic not near genes chr3L_4_22100001 chr3L_22100001 RAL-352 747 chr3L 22124809 22124824 chr3L 22124892 22124907 7 81 5.5 2.5 4.0 1.4 98 chr3L 22124809 intergenic not near genes chr3L 22124858 intergenic not near genes chr3L 22124907 intergenic not near genes chr3L_7_22120001 chr3L_22120001 RAL-352 748 chr3L 22152187 22152204 chr3L 22152251 22152261 5 74 1.0 1.5 1.2 2.3 74 chr3L 22152187 intron olf413 + chr3L 22152224 intron olf413 + chr3L 22152261 intron olf413 + chr3L_5_22150001 chr3L_22150001 RAL-352 749 chr3L 22166457 22166476 chr3L 22166525 22166554 4 76 1.0 1.5 1.2 1.8 97 chr3L 22166457 intron olf413 + chr3L 22166506 intron olf413 + chr3L 22166554 intron olf413 + chr3L_4_22165001 chr3L_22165001 RAL-352 750 chr3L 22447206 22447225 chr3L 22447297 22447316 7 89 1.5 2.5 2.0 2.3 110 chr3L 22447206 intergenic not near genes chr3L 22447261 intergenic not near genes chr3L 22447316 intergenic not near genes chr3L_7_22445001 chr3L_22445001 RAL-352 751 chr3L 22543729 22543758 chr3L 22543805 22543835 14 75 5.0 4.5 4.8 2.4 106 chr3L 22543729 intergenic not near genes chr3L 22543782 intergenic not near genes chr3L 22543835 intergenic not near genes chr3L_14_22540001 chr3L_22540001 RAL-352 752 chr3L 22555772 22555801 chr3L 22563239 22563242 blood 4 7460 2.0 2.0 2.0 1.3 7470 chr3L 22555772 intergenic not near genes chr3L 22559507 intergenic not near genes chr3L 22563242 intergenic not near genes chr3L_4_22555001 chr3L_22555001 RAL-352 753 chr3L 22570430 22570456 chr3L 22570572 22570600 10 142 2.5 1.5 2.0 3.3 170 chr3L 22570430 intergenic not near genes chr3L 22570515 intergenic not near genes chr3L 22570600 intergenic not near genes chr3L_10_22570001 chr3L_22570001 RAL-352 754 chr3L 22577627 22577648 chr3L 22582415 22582436 Doc 8 4786 1.5 12.0 6.8 1.0 4809 chr3L 22577627 intergenic not near genes chr3L 22580032 intergenic not near genes chr3L 22582436 3` UTR CG14459 - chr3L_8_22580001 chr3L_22580001 RAL-352 755 chr3L 22617188 22617222 chr3L 22624640 22624674 blood 8 7451 2.0 1.0 1.5 3.2 7486 chr3L 22617188 intron CG14459 - chr3L 22620931 intron CG14459 - chr3L 22624674 intron CG14459 - chr3L_8_22620001 chr3L_22620001 RAL-352 756 chr3L 22630743 22630773 chr3L 22630822 22630836 11 73 1.5 5.5 3.5 2.4 93 chr3L 22630743 intron CG14459 - chr3L 22630790 intron CG14459 - chr3L 22630836 intron CG14459 - chr3L_11_22630001 chr3L_22630001 RAL-352 757 chr3L 22652320 22652352 chr3L 22652458 22652490 12 137 2.0 1.0 1.5 4.8 170 chr3L 22652320 exon CG33772 - chr3L 22652405 intron CG33772 - chr3L 22652490 exon CG33772 - chr3L_12_22650001 chr3L_22650001 RAL-352 758 chr3L 22761403 22761414 chr3L 22766822 22766848 Ivk 4 5430 1.0 1.0 1.0 2.0 5445 chr3L 22761403 intron SPoCk + chr3L 22764126 intron SPoCk + chr3L 22766848 intron SPoCk + chr3L_4_22760001 chr3L_22760001 RAL-352 759 chr3L 22865982 22866008 chr3L 22867114 22867127 Doc 5 1130 3.5 2.0 2.8 1.3 1145 chr3L 22865982 intron CG33170 + chr3L 22866554 intron CG33170 + chr3L 22867127 intron CG33170 + chr3L_5_22865001 chr3L_22865001 RAL-352 760 chr3L 22897198 22897224 chr3L 22897281 22897286 9 80 2.5 4.0 3.2 2.1 88 chr3L 22897198 intergenic not near genes chr3L 22897242 intergenic not near genes chr3L 22897286 intergenic not near genes chr3L_9_22895001 chr3L_22895001 RAL-352 761 chr3L 22928836 22928856 chr3L 22928929 22928936 5 87 6.5 3.5 5.0 0.8 100 chr3L 22928836 intergenic not near genes chr3L 22928886 intergenic not near genes chr3L 22928936 intergenic not near genes chr3L_5_22925001 chr3L_22925001 RAL-352 762 chr3L 23042231 23042248 chr3L 23048984 23049001 gypsy6 6 6751 8.0 4.5 6.2 0.8 6770 chr3L 23042231 intergenic not near genes chr3L 23045616 intergenic not near genes chr3L 23049001 intergenic not near genes chr3L_6_23045001 chr3L_23045001 RAL-352 763 chr3L 23182262 23182288 chr3L 23182375 23182402 13 111 4.0 2.0 3.0 3.2 140 chr3L 23182262 intron CG34031 + chr3L 23182332 intron CG34031 + chr3L 23182402 intron CG34031 + chr3L_13_23180001 chr3L_23180001 RAL-352 764 chr3L 24168782 24168784 chr3L 24176118 24176121 ZAM 5 7336 7.0 4.5 5.8 0.7 7339 chr3L 24168782 intron Snap25 + chr3L 24172452 intron Snap25 + chr3L 24176121 intron Snap25 + chr3L_5_24170001 chr3L_24170001 RAL-352 765 chr3L 24168787 24168802 chr3L 24176116 24176121 ZAM 4 7330 3.5 4.0 3.8 0.8 7334 chr3L 24168787 intron Snap25 + chr3L 24172454 intron Snap25 + chr3L 24176121 intron Snap25 + chr3L_4_24170001 chr3L_24170001 RAL-352 766 chr3L 25343635 25343659 chr3L 25346393 25346424 5 2764 0.0 1.5 0.8 2.8 2789 chr3L 25343635 intergenic not near genes chr3L 25345030 intergenic not near genes chr3L 25346424 intergenic not near genes chr3L_5_25345001 chr3L_25345001 RAL-352 767 chr3L 25514690 25514720 chr3L 25514837 25514868 8 147 3.0 1.0 2.0 2.7 178 chr3L 25514690 intron CG41343 - chr3L 25514779 intron CG41343 - chr3L 25514868 intron CG41343 - chr3L_8_25510001 chr3L_25510001 RAL-352 768 chr3L 25842484 25842498 chr3L 25842570 25842583 4 86 3.0 3.5 3.2 1.0 99 chr3L 25842484 intron CG40178 - chr3L 25842534 intron CG40178 - chr3L 25842583 intron CG40178 - chr3L_4_25840001 chr3L_25840001 RAL-352 769 chr3L 25995929 25995952 chr3L 25995998 25996028 5 77 2.5 5.5 4.0 1.0 99 chr3L 25995929 intron CG40178 - chr3L 25995978 intron CG40178 - chr3L 25996028 intron CG40178 - chr3L_5_25995001 chr3L_25995001 RAL-352 770 chr3R 2534138 2534154 chr3R 2541705 2541719 4 7564 19.0 20.0 19.5 0.2 7581 chr3R 2534138 intergenic not near genes chr3R 2537928 intergenic not near genes chr3R 2541719 intergenic not near genes chr3R_4_2535001 chr3R_2535001 RAL-352 771 chr3R 2534156 2534165 chr3R 2541703 2541720 8 7559 17.0 17.5 17.2 0.4 7564 chr3R 2534156 intergenic not near genes chr3R 2537938 intergenic not near genes chr3R 2541720 intergenic not near genes chr3R_8_2535001 chr3R_2535001 RAL-352 772 chr3R 3578386 3578406 chr3R 3578466 3578486 6 78 1.5 4.5 3.0 1.5 100 chr3R 3578386 intron Parp - chr3R 3578436 intron Parp - chr3R 3578486 intron Parp - chr3R_6_3575001 chr3R_3575001 RAL-352 773 chr3R 4012507 4012532 chr3R 4012589 4012606 9 82 3.0 2.5 2.8 2.4 99 chr3R 4012507 intergenic not near genes chr3R 4012556 intergenic not near genes chr3R 4012606 intergenic not near genes chr3R_9_4010001 chr3R_4010001 RAL-352 774 chr3R 4063809 4063825 chr3R 4069089 4069105 5 5280 4.5 9.5 7.0 0.6 5296 chr3R 4063809 intergenic not near genes chr3R 4066457 intergenic not near genes chr3R 4069105 intergenic not near genes chr3R_5_4065001 chr3R_4065001 RAL-352 775 chr3R 4150551 4150577 chr3R 4150632 4150658 4 79 3.5 2.5 3.0 1.0 107 chr3R 4150551 intergenic not near genes chr3R 4150604 intergenic not near genes chr3R 4150658 intergenic not near genes chr3R_4_4150001 chr3R_4150001 RAL-352 776 chr3R 4206072 4206104 chr3R 4211647 4211679 mdg3 6 5572 2.5 0.0 1.2 2.7 5607 chr3R 4206072 intron CG14636 - chr3R 4208876 intron CG14636 - chr3R 4211679 intron CG14636 - chr3R_6_4205001 chr3R_4205001 RAL-352 777 chr3R 4290015 4290032 chr3R 4290523 4290542 4 506 1.5 4.0 2.8 1.1 527 chr3R 4290015 intron cpx + chr3R 4290278 intron cpx + chr3R 4290542 intron cpx + chr3R_4_4290001 chr3R_4290001 RAL-352 778 chr3R 4408423 4408435 chr3R 4412721 4412739 Juan 5 4302 2.5 2.0 2.2 1.6 4316 chr3R 4408423 intron CG32944 - chr3R 4410581 intron CG32944 - chr3R 4412739 intron CG32944 - chr3R_5_4410001 chr3R_4410001 RAL-352 779 chr3R 4568697 4568730 chr3R 4568784 4568784 4 78 1.5 0.0 0.8 2.2 87 chr3R 4568697 intergenic not near genes chr3R 4568740 intergenic not near genes chr3R 4568784 intergenic not near genes chr3R_4_4565001 chr3R_4565001 RAL-352 780 chr3R 4609546 4609570 chr3R 4610710 4610734 1360 7 1162 6.0 2.0 4.0 1.4 1188 chr3R 4609546 intergenic not near genes chr3R 4610140 intergenic not near genes chr3R 4610734 intergenic not near genes chr3R_7_4610001 chr3R_4610001 RAL-352 781 chr3R 4683182 4683209 chr3R 4684941 4684967 S-element 9 1758 0.0 1.5 0.8 5.0 1785 chr3R 4683182 intron CG43427 + chr3R 4684074 intron CG43427 + chr3R 4684967 intron CG43427 + chr3R_9_4680001 chr3R_4680001 RAL-352 782 chr3R 4753239 4753277 chr3R 4757542 4757547 F-element 12 4299 4.0 3.0 3.5 2.7 4308 chr3R 4753239 intron,intron atms +,CG44098 - chr3R 4755393 intron,intron atms +,CG44098 - chr3R 4757547 intron,exon atms +,CG44098 - chr3R_12_4755001 chr3R_4755001 RAL-352 783 chr3R 4759717 4759747 chr3R 4761214 4761244 hopper2 10 1496 1.0 3.5 2.2 3.1 1527 chr3R 4759717 intron,intron atms +,CG44098 - chr3R 4760480 intron,intron atms +,CG44098 - chr3R 4761244 intron,intron atms +,CG44098 - chr3R_10_4760001 chr3R_4760001 RAL-352 784 chr3R 4796113 4796141 chr3R 4796236 4796264 11 122 3.5 2.0 2.8 2.9 151 chr3R 4796113 intron ctrip - chr3R 4796188 intron ctrip - chr3R 4796264 intron ctrip - chr3R_11_4795001 chr3R_4795001 RAL-352 785 chr3R 4861566 4861598 chr3R 4861647 4861675 14 74 4.0 3.5 3.8 2.9 109 chr3R 4861566 intron opa + chr3R 4861620 intron opa + chr3R 4861675 intron opa + chr3R_14_4860001 chr3R_4860001 RAL-352 786 chr3R 4966007 4966034 chr3R 4966099 4966100 7 87 1.5 1.0 1.2 3.2 93 chr3R 4966007 intron CG1124 + chr3R 4966054 intron CG1124 + chr3R 4966100 intron CG1124 + chr3R_7_4965001 chr3R_4965001 RAL-352 787 chr3R 4984907 4984920 chr3R 4984995 4985024 4 100 4.0 3.5 3.8 0.8 117 chr3R 4984907 3` UTR CR43424 - chr3R 4984966 3` UTR CR43424 - chr3R 4985024 3` UTR CR43424 - chr3R_4_4980001 chr3R_4980001 RAL-352 788 chr3R 5067984 5068010 chr3R 5073501 5073526 mdg3 7 5514 1.0 2.5 1.8 2.5 5542 chr3R 5067984 intergenic not near genes chr3R 5070755 intergenic not near genes chr3R 5073526 intergenic not near genes chr3R_7_5070001 chr3R_5070001 RAL-352 789 chr3R 5158153 5158177 chr3R 5158245 5158270 6 93 1.5 1.5 1.5 2.4 117 chr3R 5158153 intron dpr16 + chr3R 5158212 intron dpr16 + chr3R 5158270 intron dpr16 + chr3R_6_5155001 chr3R_5155001 RAL-352 790 chr3R 5278091 5278119 chr3R 5278172 5278200 9 79 5.0 2.0 3.5 2.0 109 chr3R 5278091 intron mtd - chr3R 5278146 intron mtd - chr3R 5278200 intron mtd - chr3R_9_5275001 chr3R_5275001 RAL-352 791 chr3R 5338405 5338424 chr3R 5343569 5343601 Rt1c 10 5176 3.0 4.0 3.5 2.2 5196 chr3R 5338405 intron mtd - chr3R 5341003 intron mtd - chr3R 5343601 intron mtd - chr3R_10_5340001 chr3R_5340001 RAL-352 792 chr3R 5445961 5445988 chr3R 5452419 5452445 Burdock 4 6458 0.5 3.0 1.8 1.4 6484 chr3R 5445961 intron CG14669 + chr3R 5449203 intron CG14669 + chr3R 5452445 intron CG14669 + chr3R_4_5445001 chr3R_5445001 RAL-352 793 chr3R 5519592 5519621 chr3R 5519728 5519758 7 133 2.0 3.0 2.5 2.0 166 chr3R 5519592 intron,intron Nmdar1 -,Itp-r83A + chr3R 5519675 intron,intron Nmdar1 -,Itp-r83A + chr3R 5519758 intron,intron Nmdar1 -,Itp-r83A + chr3R_7_5515001 chr3R_5515001 RAL-352 794 chr3R 5746017 5746042 chr3R 5746256 5746277 pogo 9 235 5.0 5.0 5.0 1.5 260 chr3R 5746017 3` UTR Madm + chr3R 5746147 3` UTR Madm + chr3R 5746277 3` UTR Madm + chr3R_9_5745001 chr3R_5745001 RAL-352 795 chr3R 5765643 5765656 chr3R 5765713 5765738 10 79 6.5 2.0 4.2 1.9 95 chr3R 5765643 intron CG2082 - chr3R 5765690 intron CG2082 - chr3R 5765738 intron CG2082 - chr3R_10_5765001 chr3R_5765001 RAL-352 796 chr3R 5772386 5772408 chr3R 5772544 5772566 7 155 3.0 7.0 5.0 1.2 180 chr3R 5772386 intron CG2082 - chr3R 5772476 intron CG2082 - chr3R 5772566 intron CG2082 - chr3R_7_5770001 chr3R_5770001 RAL-352 797 chr3R 5809121 5809141 chr3R 5809357 5809376 pogo 7 239 2.5 5.5 4.0 1.4 255 chr3R 5809121 3` UTR CG11000 + chr3R 5809248 3` UTR CG11000 + chr3R 5809376 3` UTR CG11000 + chr3R_7_5805001 chr3R_5805001 RAL-352 798 chr3R 5822383 5822404 chr3R 5823549 5823571 1360 6 1166 3.0 0.5 1.8 2.1 1188 chr3R 5822383 3` UTR CG2023 - chr3R 5822977 3` UTR CG2023 - chr3R 5823571 3` UTR CG2023 - chr3R_6_5820001 chr3R_5820001 RAL-352 799 chr3R 5840820 5840850 chr3R 5840909 5840939 16 87 9.5 7.0 8.2 1.7 119 chr3R 5840820 intergenic CG1213 + chr3R 5840880 intergenic CG1213 + chr3R 5840939 intergenic CG1213 + chr3R_16_5840001 chr3R_5840001 RAL-352 800 chr3R 5927561 5927577 chr3R 5927800 5927817 pogo 6 239 3.5 0.5 2.0 2.0 256 chr3R 5927561 intron CG34113 - chr3R 5927689 intron CG34113 - chr3R 5927817 intron CG34113 - chr3R_6_5925001 chr3R_5925001 RAL-352 801 chr3R 5927579 5927588 chr3R 5927799 5927828 pogo 4 235 3.5 0.5 2.0 1.3 249 chr3R 5927579 intron CG34113 - chr3R 5927704 intron CG34113 - chr3R 5927828 intron CG34113 - chr3R_4_5925001 chr3R_5925001 RAL-352 802 chr3R 6015960 6015995 chr3R 6024441 6024476 Tirant 10 8474 0.5 2.0 1.2 4.5 8516 chr3R 6015960 intergenic not near genes chr3R 6020218 intergenic not near genes chr3R 6024476 intergenic not near genes chr3R_10_6020001 chr3R_6020001 RAL-352 803 chr3R 6148475 6148495 chr3R 6148573 6148593 4 98 0.0 0.5 0.2 3.3 118 chr3R 6148475 intergenic not near genes chr3R 6148534 intergenic not near genes chr3R 6148593 intergenic not near genes chr3R_4_6145001 chr3R_6145001 RAL-352 804 chr3R 6175179 6175204 chr3R 6182451 6182466 HMS-Beagle2 4 7270 3.0 2.0 2.5 1.1 7287 chr3R 6175179 intergenic Osi1 + chr3R 6178822 intron CR45194 + chr3R 6182466 intergenic CR45194 + chr3R_4_6175001 chr3R_6175001 RAL-352 805 chr3R 6519115 6519136 chr3R 6519220 6519244 4 107 2.0 0.5 1.2 1.8 129 chr3R 6519115 intergenic not near genes chr3R 6519180 intergenic not near genes chr3R 6519244 intergenic not near genes chr3R_4_6515001 chr3R_6515001 RAL-352 806 chr3R 6538204 6538227 chr3R 6538302 6538325 7 94 3.0 3.5 3.2 1.7 121 chr3R 6538204 intron dpr11 - chr3R 6538264 intron dpr11 - chr3R 6538325 exon dpr11 - chr3R_7_6535001 chr3R_6535001 RAL-352 807 chr3R 6550326 6550334 chr3R 6550406 6550413 5 80 3.0 5.5 4.2 1.0 87 chr3R 6550326 intron dpr11 - chr3R 6550370 intron dpr11 - chr3R 6550413 intron dpr11 - chr3R_5_6550001 chr3R_6550001 RAL-352 808 chr3R 6551110 6551143 chr3R 6551204 6551233 8 93 3.0 5.0 4.0 1.6 123 chr3R 6551110 intron dpr11 - chr3R 6551172 intron dpr11 - chr3R 6551233 intron dpr11 - chr3R_8_6550001 chr3R_6550001 RAL-352 809 chr3R 6862222 6862239 chr3R 6862309 6862326 7 85 4.5 1.5 3.0 1.8 104 chr3R 6862222 intergenic not near genes chr3R 6862274 intergenic not near genes chr3R 6862326 intergenic not near genes chr3R_7_6860001 chr3R_6860001 RAL-352 810 chr3R 6912119 6912130 chr3R 6912223 6912234 4 108 2.0 0.0 1.0 2.0 115 chr3R 6912119 intron Antp - chr3R 6912176 intron Antp - chr3R 6912234 intron Antp - chr3R_4_6910001 chr3R_6910001 RAL-352 811 chr3R 6987418 6987428 chr3R 6987495 6987511 4 81 1.0 2.5 1.8 1.4 93 chr3R 6987418 intron Antp - chr3R 6987464 intron Antp - chr3R 6987511 intron Antp - chr3R_4_6985001 chr3R_6985001 RAL-352 812 chr3R 7103283 7103314 chr3R 7103359 7103380 11 74 4.0 3.0 3.5 2.4 97 chr3R 7103283 intron Alh - chr3R 7103332 intron Alh - chr3R 7103380 intron Alh - chr3R_11_7100001 chr3R_7100001 RAL-352 813 chr3R 7206899 7206906 chr3R 7206963 7206995 4 70 1.5 2.5 2.0 1.3 96 chr3R 7206899 intergenic CG1288 - chr3R 7206947 intergenic CG1288 - chr3R 7206995 intergenic CG1288 - chr3R_4_7205001 chr3R_7205001 RAL-352 814 chr3R 7385589 7385617 chr3R 7385659 7385693 7 70 3.0 5.0 4.0 1.4 104 chr3R 7385589 intergenic not near genes chr3R 7385641 intergenic not near genes chr3R 7385693 intergenic not near genes chr3R_7_7385001 chr3R_7385001 RAL-352 815 chr3R 7464693 7464723 chr3R 7464776 7464799 10 83 2.0 4.0 3.0 2.5 106 chr3R 7464693 intergenic not near genes chr3R 7464746 intergenic not near genes chr3R 7464799 intergenic not near genes chr3R_10_7460001 chr3R_7460001 RAL-352 816 chr3R 7724449 7724471 chr3R 7724539 7724546 4 85 4.5 5.5 5.0 0.7 97 chr3R 7724449 3` UTR CG2616 + chr3R 7724498 3` UTR CG2616 + chr3R 7724546 3` UTR CG2616 + chr3R_4_7720001 chr3R_7720001 RAL-352 817 chr3R 7729468 7729495 chr3R 7737406 7737433 Stalker2 4 7938 1.5 3.0 2.2 1.2 7965 chr3R 7729468 intergenic not near genes chr3R 7733450 intergenic not near genes chr3R 7737433 intergenic not near genes chr3R_4_7730001 chr3R_7730001 RAL-352 818 chr3R 8090275 8090300 chr3R 8090451 8090477 4 177 3.0 3.5 3.2 1.0 202 chr3R 8090275 5` UTR CR44330 + chr3R 8090376 intergenic CR44330 + chr3R 8090477 intergenic CR44330 + chr3R_4_8090001 chr3R_8090001 RAL-352 819 chr3R 8101765 8101791 chr3R 8104848 8104875 G2 8 3081 4.5 1.5 3.0 2.0 3110 chr3R 8101765 exon CG7900 + chr3R 8103320 intron CG7900 + chr3R 8104875 3` UTR CG7900 + chr3R_8_8100001 chr3R_8100001 RAL-352 820 chr3R 8107396 8107419 chr3R 8107520 8107541 7 128 3.0 1.5 2.2 2.2 145 chr3R 8107396 intron puc + chr3R 8107468 intron puc + chr3R 8107541 intron puc + chr3R_7_8105001 chr3R_8105001 RAL-352 821 chr3R 8207558 8207577 chr3R 8208401 8208405 F-element 5 840 3.0 6.0 4.5 0.9 847 chr3R 8207558 intergenic not near genes chr3R 8207982 intergenic not near genes chr3R 8208405 intergenic not near genes chr3R_5_8205001 chr3R_8205001 RAL-352 822 chr3R 8267850 8267882 chr3R 8267931 8267959 8 77 1.5 7.0 4.2 1.5 109 chr3R 8267850 3` UTR Mcm2 + chr3R 8267904 3` UTR Mcm2 + chr3R 8267959 3` UTR CG9630 - chr3R_8_8265001 chr3R_8265001 RAL-352 823 chr3R 8339246 8339247 chr3R 21907534 21907536 18 13568288 21.5 26.5 24.0 0.7 13568290 chr3R 8339246 intergenic not near genes chr3R 15123391 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_18_15120001 chr3R_15120001 RAL-352 824 chr3R 8393595 8393605 chr3R 8393656 8393689 6 76 2.5 0.5 1.5 2.4 94 chr3R 8393595 intron CG45263 - chr3R 8393642 intron CG45263 - chr3R 8393689 intron CG45263 - chr3R_6_8390001 chr3R_8390001 RAL-352 825 chr3R 8403008 8403024 chr3R 8412174 8412190 roo 8 9164 11.0 5.0 8.0 0.9 9182 chr3R 8403008 intron CG45263 - chr3R 8407599 intron CG45263 - chr3R 8412190 intron CG45263 - chr3R_8_8405001 chr3R_8405001 RAL-352 826 chr3R 8403027 8403039 chr3R 8412172 8412192 roo 10 9160 4.5 4.5 4.5 1.8 9165 chr3R 8403027 intron CG45263 - chr3R 8407610 intron CG45263 - chr3R 8412192 intron CG45263 - chr3R_10_8405001 chr3R_8405001 RAL-352 827 chr3R 8478082 8478102 chr3R 8478160 8478181 8 79 3.0 2.0 2.5 2.3 99 chr3R 8478082 intergenic CG45263 - chr3R 8478132 intergenic not near genes chr3R 8478181 intergenic not near genes chr3R_8_8475001 chr3R_8475001 RAL-352 828 chr3R 8552370 8552402 chr3R 8552447 8552482 8 78 2.0 5.0 3.5 1.8 112 chr3R 8552370 intergenic Or85d + chr3R 8552426 intergenic Or85d + chr3R 8552482 intergenic Or85d + chr3R_8_8550001 chr3R_8550001 RAL-352 829 chr3R 8563566 8563592 chr3R 8563675 8563703 6 108 0.5 0.5 0.5 4.0 137 chr3R 8563566 3` UTR CR44291 - chr3R 8563634 3` UTR CR44291 - chr3R 8563703 3` UTR CR44291 - chr3R_6_8560001 chr3R_8560001 RAL-352 830 chr3R 8570476 8570511 chr3R 8575112 8575146 HMS-Beagle 9 4628 3.0 2.5 2.8 2.4 4670 chr3R 8570476 intergenic not near genes chr3R 8572811 intergenic not near genes chr3R 8575146 intergenic not near genes chr3R_9_8570001 chr3R_8570001 RAL-352 831 chr3R 8596284 8596307 chr3R 8596396 8596409 11 111 1.0 1.5 1.2 5.0 125 chr3R 8596284 intron 5-HT2B + chr3R 8596346 intron 5-HT2B + chr3R 8596409 intron 5-HT2B + chr3R_11_8595001 chr3R_8595001 RAL-352 832 chr3R 8601773 8601797 chr3R 8610926 8610927 roo 9 9148 3.0 4.0 3.5 2.0 9154 chr3R 8601773 intron 5-HT2B + chr3R 8606350 intron 5-HT2B + chr3R 8610927 intron 5-HT2B + chr3R_9_8605001 chr3R_8605001 RAL-352 833 chr3R 8707357 8707381 chr3R 8709798 8709822 jockey 8 2440 3.5 5.0 4.2 1.5 2465 chr3R 8707357 intergenic not near genes chr3R 8708590 intergenic not near genes chr3R 8709822 intergenic not near genes chr3R_8_8705001 chr3R_8705001 RAL-352 834 chr3R 8863636 8863659 chr3R 8863743 8863772 10 111 5.0 0.0 2.5 2.9 136 chr3R 8863636 intron pyd - chr3R 8863704 intron pyd - chr3R 8863772 intron pyd - chr3R_10_8860001 chr3R_8860001 RAL-352 835 chr3R 9083153 9083169 chr3R 9083226 9083239 6 78 2.0 5.5 3.8 1.2 86 chr3R 9083153 intron pum - chr3R 9083196 intron pum - chr3R 9083239 intron pum - chr3R_6_9080001 chr3R_9080001 RAL-352 836 chr3R 9141174 9141187 chr3R 9141263 9141276 8 88 2.0 4.0 3.0 2.0 102 chr3R 9141174 intron pum - chr3R 9141225 intron pum - chr3R 9141276 intron pum - chr3R_8_9140001 chr3R_9140001 RAL-352 837 chr3R 9204028 9204052 chr3R 9204420 9204422 5 387 3.5 2.5 3.0 1.2 394 chr3R 9204028 intron pum - chr3R 9204225 intron pum - chr3R 9204422 intron pum - chr3R_5_9200001 chr3R_9200001 RAL-352 838 chr3R 9227943 9227965 chr3R 9228048 9228079 9 109 3.0 1.5 2.2 2.8 136 chr3R 9227943 intron pum - chr3R 9228011 intron pum - chr3R 9228079 intron pum - chr3R_9_9225001 chr3R_9225001 RAL-352 839 chr3R 9278789 9278811 chr3R 9284038 9284043 Rt1a 10 5251 4.0 7.5 5.8 1.5 5254 chr3R 9278789 intergenic not near genes chr3R 9281416 intergenic not near genes chr3R 9284043 intergenic not near genes chr3R_10_9280001 chr3R_9280001 RAL-352 840 chr3R 9304529 9304557 chr3R 9311815 9311821 Stalker4 6 7282 3.0 1.0 2.0 2.0 7292 chr3R 9304529 intron CG8861 - chr3R 9308175 intron CG8861 - chr3R 9311821 intron CG8861 - chr3R_6_9305001 chr3R_9305001 RAL-352 841 chr3R 9319579 9319608 chr3R 9320006 9320018 jockey 11 428 3.5 1.0 2.2 3.4 439 chr3R 9319579 intron CG8861 - chr3R 9319798 intron CG8861 - chr3R 9320018 intron CG8861 - chr3R_11_9315001 chr3R_9315001 RAL-352 842 chr3R 9419880 9419915 chr3R 9419978 9420005 5 95 2.0 0.5 1.2 2.3 125 chr3R 9419880 intron ps + chr3R 9419942 intron ps + chr3R 9420005 intron ps + chr3R_5_9415001 chr3R_9415001 RAL-352 843 chr3R 9524025 9524032 chr3R 9524104 9524119 4 83 2.5 2.5 2.5 1.1 94 chr3R 9524025 intron CG8176 + chr3R 9524072 intron CG8176 + chr3R 9524119 intron CG8176 + chr3R_4_9520001 chr3R_9520001 RAL-352 844 chr3R 9620956 9620956 chr3R 21907534 21907536 5 12286579 13.0 26.5 19.8 0.2 12286580 chr3R 9620956 intron CG8312 + chr3R 15764246 intergenic not near genes chr3R 21907536 intergenic CG6678 + chr3R_5_15760001 chr3R_15760001 RAL-352 845 chr3R 9699978 9700001 chr3R 9700067 9700078 1360 5 86 5.0 5.0 5.0 0.8 100 chr3R 9699978 intron Unc-115a - chr3R 9700028 intron Unc-115a - chr3R 9700078 intron Unc-115a - chr3R_5_9700001 chr3R_9700001 RAL-352 846 chr3R 9836868 9836900 chr3R 9836956 9836988 7 86 7.0 7.0 7.0 0.9 120 chr3R 9836868 intron Teh1 - chr3R 9836928 intron Teh1 - chr3R 9836988 intron Teh1 - chr3R_7_9835001 chr3R_9835001 RAL-352 847 chr3R 9996305 9996309 chr3R 9996643 9996647 7 337 7.5 4.0 5.8 1.0 342 chr3R 9996305 exon Gr85a - chr3R 9996476 exon Gr85a - chr3R 9996647 exon Gr85a - chr3R_7_9995001 chr3R_9995001 RAL-352 848 chr3R 9996311 9996326 chr3R 9996642 9996664 11 336 5.5 3.5 4.5 2.0 353 chr3R 9996311 exon Gr85a - chr3R 9996488 exon Gr85a - chr3R 9996664 exon Gr85a - chr3R_11_9995001 chr3R_9995001 RAL-352 849 chr3R 10192290 10192298 chr3R 10192476 10192484 4 184 9.0 8.5 8.8 0.4 194 chr3R 10192290 intron Syn + chr3R 10192387 intron Syn + chr3R 10192484 intron Syn + chr3R_4_10190001 chr3R_10190001 RAL-352 850 chr3R 10401898 10401926 chr3R 10402087 10402109 6 184 3.5 6.0 4.8 1.0 211 chr3R 10401898 exon mthl11 + chr3R 10402004 intron mthl11 + chr3R 10402109 exon mthl11 + chr3R_6_10400001 chr3R_10400001 RAL-352 851 chr3R 10430697 10430707 chr3R 10430763 10430795 4 82 3.5 2.0 2.8 1.1 98 chr3R 10430697 intergenic not near genes chr3R 10430746 intergenic not near genes chr3R 10430795 intergenic not near genes chr3R_4_10430001 chr3R_10430001 RAL-352 852 chr3R 10458594 10458621 chr3R 10458679 10458694 5 82 3.0 3.0 3.0 1.2 100 chr3R 10458594 intergenic not near genes chr3R 10458644 intergenic not near genes chr3R 10458694 intergenic not near genes chr3R_5_10455001 chr3R_10455001 RAL-352 853 chr3R 10491778 10491807 chr3R 10491862 10491891 5 84 1.5 4.0 2.8 1.3 113 chr3R 10491778 intergenic not near genes chr3R 10491834 intergenic not near genes chr3R 10491891 intergenic not near genes chr3R_5_10490001 chr3R_10490001 RAL-352 854 chr3R 10507253 10507268 chr3R 10507339 10507346 6 84 4.5 4.0 4.2 1.2 93 chr3R 10507253 intergenic hth - chr3R 10507300 intergenic hth - chr3R 10507346 intergenic hth - chr3R_6_10505001 chr3R_10505001 RAL-352 855 chr3R 10507269 10507284 chr3R 10507334 10507345 7 70 2.5 2.5 2.5 2.0 76 chr3R 10507269 intergenic hth - chr3R 10507307 intergenic hth - chr3R 10507345 intergenic hth - chr3R_7_10505001 chr3R_10505001 RAL-352 856 chr3R 10563145 10563160 chr3R 10563225 10563240 5 78 1.5 0.5 1.0 2.5 95 chr3R 10563145 intron hth - chr3R 10563192 intron hth - chr3R 10563240 intron hth - chr3R_5_10560001 chr3R_10560001 RAL-352 857 chr3R 10723769 10723785 chr3R 10723861 10723877 5 92 2.5 1.5 2.0 1.7 108 chr3R 10723769 intergenic not near genes chr3R 10723823 intergenic not near genes chr3R 10723877 intergenic not near genes chr3R_5_10720001 chr3R_10720001 RAL-352 858 chr3R 10727641 10727677 chr3R 10727721 10727756 19 75 2.5 4.0 3.2 4.5 115 chr3R 10727641 intergenic not near genes chr3R 10727698 intergenic not near genes chr3R 10727756 intergenic not near genes chr3R_19_10725001 chr3R_10725001 RAL-352 859 chr3R 10732330 10732345 chr3R 10733202 10733215 4 870 1.5 4.0 2.8 1.1 885 chr3R 10732330 intergenic not near genes chr3R 10732772 intergenic not near genes chr3R 10733215 intergenic not near genes chr3R_4_10730001 chr3R_10730001 RAL-352 860 chr3R 10745426 10745445 chr3R 10745513 10745530 4 84 6.0 4.5 5.2 0.6 104 chr3R 10745426 intron TkR86C - chr3R 10745478 intron TkR86C - chr3R 10745530 intron TkR86C - chr3R_4_10745001 chr3R_10745001 RAL-352 861 chr3R 10870868 10870901 chr3R 10870947 10870982 13 79 1.5 5.0 3.2 3.1 114 chr3R 10870868 intergenic Fdh -,Tsp86D + chr3R 10870925 3` UTR Fdh - chr3R 10870982 3` UTR Fdh - chr3R_13_10870001 chr3R_10870001 RAL-352 862 chr3R 10919686 10919718 chr3R 10919764 10919796 7 78 4.0 3.0 3.5 1.6 110 chr3R 10919686 intergenic not near genes chr3R 10919741 intergenic not near genes chr3R 10919796 intergenic not near genes chr3R_7_10915001 chr3R_10915001 RAL-352 863 chr3R 10920056 10920075 chr3R 10920134 10920153 5 76 1.0 5.5 3.2 1.2 97 chr3R 10920056 intergenic not near genes chr3R 10920104 intergenic not near genes chr3R 10920153 intergenic not near genes chr3R_5_10920001 chr3R_10920001 RAL-352 864 chr3R 10987280 10987305 chr3R 10988147 10988172 8 864 2.5 2.5 2.5 2.3 892 chr3R 10987280 intron CG34114 + chr3R 10987726 intron CG34114 + chr3R 10988172 intron CG34114 + chr3R_8_10985001 chr3R_10985001 RAL-352 865 chr3R 11073641 11073659 chr3R 11073874 11073885 5 232 1.0 3.0 2.0 1.7 244 chr3R 11073641 intergenic not near genes chr3R 11073763 intergenic not near genes chr3R 11073885 intergenic not near genes chr3R_5_11070001 chr3R_11070001 RAL-352 866 chr3R 11085790 11085803 chr3R 11086078 11086098 6 292 2.0 2.0 2.0 2.0 308 chr3R 11085790 intergenic CR44940 - chr3R 11085944 intergenic CR44940 - chr3R 11086098 intergenic not near genes chr3R_6_11085001 chr3R_11085001 RAL-352 867 chr3R 11102322 11102354 chr3R 11102403 11102434 9 77 6.0 3.5 4.8 1.6 112 chr3R 11102322 intergenic not near genes chr3R 11102378 intergenic not near genes chr3R 11102434 intergenic not near genes chr3R_9_11100001 chr3R_11100001 RAL-352 868 chr3R 11109039 11109051 chr3R 11109150 11109157 4 112 1.0 0.5 0.8 2.2 118 chr3R 11109039 intergenic not near genes chr3R 11109098 intergenic not near genes chr3R 11109157 intergenic not near genes chr3R_4_11105001 chr3R_11105001 RAL-352 869 chr3R 11126251 11126270 chr3R 11126355 11126375 4 104 0.5 2.0 1.2 1.8 124 chr3R 11126251 intergenic Ugt86Dd - chr3R 11126313 intergenic Ugt86Dd - chr3R 11126375 intergenic Ugt86Dd - chr3R_4_11125001 chr3R_11125001 RAL-352 870 chr3R 11149874 11149883 chr3R 11149971 11149980 5 97 10.0 5.0 7.5 0.6 106 chr3R 11149874 intergenic not near genes chr3R 11149927 intergenic not near genes chr3R 11149980 intergenic not near genes chr3R_5_11145001 chr3R_11145001 RAL-352 871 chr3R 11149884 11149903 chr3R 11149966 11150000 10 93 3.5 4.0 3.8 2.1 116 chr3R 11149884 intergenic not near genes chr3R 11149942 intergenic not near genes chr3R 11150000 intergenic not near genes chr3R_10_11145001 chr3R_11145001 RAL-352 872 chr3R 11174610 11174613 chr3R 11175313 11175327 4 711 23.0 19.5 21.2 0.2 717 chr3R 11174610 exon Ugt86Dj - chr3R 11174968 intron Ugt86Dj - chr3R 11175327 exon Ugt86Dj - chr3R_4_11170001 chr3R_11170001 RAL-352 873 chr3R 11294467 11294497 chr3R 11294778 11294805 12 308 1.5 5.5 3.5 2.7 338 chr3R 11294467 intron CR31386 - chr3R 11294636 intron CR31386 - chr3R 11294805 intron CR31386 - chr3R_12_11290001 chr3R_11290001 RAL-352 874 chr3R 11379236 11379261 chr3R 11388391 11388397 roo 6 9151 1.5 2.0 1.8 2.1 9161 chr3R 11379236 intron pros + chr3R 11383816 intron pros + chr3R 11388397 intron pros + chr3R_6_11380001 chr3R_11380001 RAL-352 875 chr3R 11518813 11518847 chr3R 11518904 11518938 9 90 2.0 3.5 2.8 2.4 125 chr3R 11518813 intergenic not near genes chr3R 11518876 intergenic not near genes chr3R 11518938 intergenic not near genes chr3R_9_11515001 chr3R_11515001 RAL-352 876 chr3R 11683809 11683841 chr3R 11683889 11683920 9 79 0.5 1.0 0.8 5.0 111 chr3R 11683809 intron CG6830 - chr3R 11683864 intron CG6830 - chr3R 11683920 intron CG6830 - chr3R_9_11680001 chr3R_11680001 RAL-352 877 chr3R 11841062 11841097 chr3R 11846253 11846288 BS 9 5190 4.0 4.0 4.0 1.8 5226 chr3R 11841062 intron CG6959 - chr3R 11843675 intron CG6959 - chr3R 11846288 intron CG6959 - chr3R_9_11840001 chr3R_11840001 RAL-352 878 chr3R 11914383 11914402 chr3R 11914468 11914481 5 83 0.0 3.0 1.5 2.0 98 chr3R 11914383 intron Cad87A - chr3R 11914432 intron Cad87A - chr3R 11914481 intron Cad87A - chr3R_5_11910001 chr3R_11910001 RAL-352 879 chr3R 11916426 11916460 chr3R 11916505 11916530 10 74 2.0 1.5 1.8 3.6 104 chr3R 11916426 intron Cad87A - chr3R 11916478 intron Cad87A - chr3R 11916530 intron Cad87A - chr3R_10_11915001 chr3R_11915001 RAL-352 880 chr3R 11930237 11930267 chr3R 11930320 11930349 11 81 4.5 3.0 3.8 2.3 112 chr3R 11930237 intron Cad87A - chr3R 11930293 intron Cad87A - chr3R 11930349 intron Cad87A - chr3R_11_11930001 chr3R_11930001 RAL-352 881 chr3R 12022895 12022909 chr3R 12025062 12025083 pogo 6 2173 2.5 1.5 2.0 2.0 2188 chr3R 12022895 intergenic not near genes chr3R 12023989 intergenic not near genes chr3R 12025083 intergenic not near genes chr3R_6_12020001 chr3R_12020001 RAL-352 882 chr3R 12081998 12082028 chr3R 12082071 12082104 12 74 2.0 1.5 1.8 4.3 106 chr3R 12081998 intron CG14741 - chr3R 12082051 intron CG14741 - chr3R 12082104 intron CG14741 - chr3R_12_12080001 chr3R_12080001 RAL-352 883 chr3R 12145987 12146012 chr3R 12146068 12146091 5 76 1.5 1.5 1.5 2.0 104 chr3R 12145987 intron dpr15 - chr3R 12146039 intron dpr15 - chr3R 12146091 intron dpr15 - chr3R_5_12145001 chr3R_12145001 RAL-352 884 chr3R 12180037 12180068 chr3R 12180123 12180154 12 81 4.0 2.5 3.2 2.9 117 chr3R 12180037 intergenic not near genes chr3R 12180096 intergenic not near genes chr3R 12180154 intergenic not near genes chr3R_12_12180001 chr3R_12180001 RAL-352 885 chr3R 12247141 12247161 chr3R 12247226 12247246 8 85 6.5 0.0 3.2 1.9 105 chr3R 12247141 intergenic not near genes chr3R 12247194 intergenic not near genes chr3R 12247246 intergenic not near genes chr3R_8_12245001 chr3R_12245001 RAL-352 886 chr3R 12602402 12602417 chr3R 12602480 12602493 4 74 5.5 5.5 5.5 0.6 91 chr3R 12602402 intergenic not near genes chr3R 12602448 intergenic not near genes chr3R 12602493 intergenic not near genes chr3R_4_12600001 chr3R_12600001 RAL-352 887 chr3R 12733853 12733887 chr3R 12733932 12733963 9 77 1.5 2.0 1.8 3.2 110 chr3R 12733853 intergenic not near genes chr3R 12733908 intergenic not near genes chr3R 12733963 intergenic not near genes chr3R_9_12730001 chr3R_12730001 RAL-352 888 chr3R 12920160 12920184 chr3R 12925361 12925386 copia 5 5199 3.5 2.0 2.8 1.3 5226 chr3R 12920160 intron beat-Vb + chr3R 12922773 intron beat-Vb + chr3R 12925386 intron beat-Vb + chr3R_5_12920001 chr3R_12920001 RAL-352 889 chr3R 13104419 13104420 chr3R 21907534 21907535 5 8803115 24.5 26.5 25.5 0.2 8803116 chr3R 13104419 intron timeout + chr3R 17505977 intergenic Dscam3 - chr3R 21907535 intergenic CG6678 + chr3R_5_17505001 chr3R_17505001 RAL-352 890 chr3R 13120773 13120798 chr3R 13120850 13120875 10 71 1.5 3.0 2.2 3.1 102 chr3R 13120773 intron timeout + chr3R 13120824 intron timeout + chr3R 13120875 intron timeout + chr3R_10_13120001 chr3R_13120001 RAL-352 891 chr3R 13135826 13135854 chr3R 13138001 13138028 pogo 4 2174 1.5 1.0 1.2 1.8 2202 chr3R 13135826 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13136927 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13138028 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_4_13135001 chr3R_13135001 RAL-352 892 chr3R 13143045 13143058 chr3R 13148622 13148629 mdg3 5 5574 3.5 7.0 5.2 0.8 5584 chr3R 13143045 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13145837 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13148629 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_5_13145001 chr3R_13145001 RAL-352 893 chr3R 13143059 13143066 chr3R 13148618 13148640 mdg3 7 5572 1.5 4.5 3.0 1.8 5581 chr3R 13143059 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13145850 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13148640 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_7_13145001 chr3R_13145001 RAL-352 894 chr3R 13205412 13205424 chr3R 13205493 13205505 5 80 7.0 3.0 5.0 0.8 93 chr3R 13205412 intergenic not near genes chr3R 13205458 intergenic not near genes chr3R 13205505 intergenic not near genes chr3R_5_13205001 chr3R_13205001 RAL-352 895 chr3R 13205432 13205439 chr3R 13205489 13205499 5 68 2.5 3.0 2.8 1.3 67 chr3R 13205432 intergenic not near genes chr3R 13205466 intergenic not near genes chr3R 13205499 intergenic not near genes chr3R_5_13205001 chr3R_13205001 RAL-352 896 chr3R 13206654 13206679 chr3R 13206887 13206889 6 229 3.0 1.0 2.0 2.0 235 chr3R 13206654 intergenic not near genes chr3R 13206772 intergenic not near genes chr3R 13206889 intergenic not near genes chr3R_6_13205001 chr3R_13205001 RAL-352 897 chr3R 13274219 13274246 chr3R 13274297 13274319 9 72 2.0 6.0 4.0 1.8 100 chr3R 13274219 intergenic not near genes chr3R 13274269 intergenic not near genes chr3R 13274319 intergenic not near genes chr3R_9_13270001 chr3R_13270001 RAL-352 898 chr3R 13277003 13277023 chr3R 13277080 13277111 6 86 3.0 2.0 2.5 1.7 108 chr3R 13277003 intergenic not near genes chr3R 13277057 intergenic not near genes chr3R 13277111 intergenic not near genes chr3R_6_13275001 chr3R_13275001 RAL-352 899 chr3R 13380727 13380751 chr3R 13380815 13380839 8 86 2.0 2.5 2.2 2.5 112 chr3R 13380727 exon CG8870 + chr3R 13380783 exon CG8870 + chr3R 13380839 intron CG8870 + chr3R_8_13380001 chr3R_13380001 RAL-352 900 chr3R 13418669 13418680 chr3R 13418745 13418756 4 75 1.0 0.0 0.5 2.7 87 chr3R 13418669 intergenic not near genes chr3R 13418712 intergenic not near genes chr3R 13418756 intergenic not near genes chr3R_4_13415001 chr3R_13415001 RAL-352 901 chr3R 13496631 13496640 chr3R 13496709 13496719 6 79 7.5 0.0 3.8 1.2 88 chr3R 13496631 intergenic not near genes chr3R 13496675 intergenic not near genes chr3R 13496719 intergenic not near genes chr3R_6_13495001 chr3R_13495001 RAL-352 902 chr3R 13672942 13672978 chr3R 13673020 13673056 9 77 1.5 2.5 2.0 3.0 114 chr3R 13672942 intron Task6 - chr3R 13672999 intron Task6 - chr3R 13673056 intron Task6 - chr3R_9_13670001 chr3R_13670001 RAL-352 903 chr3R 13693028 13693028 chr3R 21907534 21907536 11 8214507 3.5 26.5 15.0 0.7 8214508 chr3R 13693028 3` UTR flfl + chr3R 17800282 exon CG17803 - chr3R 21907536 intergenic CG6678 + chr3R_11_17800001 chr3R_17800001 RAL-352 904 chr3R 13872772 13872778 chr3R 13873193 13873200 5 422 17.0 3.0 10.0 0.5 428 chr3R 13872772 intron E5 - chr3R 13872986 intron E5 - chr3R 13873200 intron E5 - chr3R_5_13870001 chr3R_13870001 RAL-352 905 chr3R 13948239 13948257 chr3R 13948317 13948335 4 76 1.0 3.5 2.2 1.2 96 chr3R 13948239 intergenic CG31517 + chr3R 13948287 intergenic CG31517 + chr3R 13948335 intergenic CG31517 + chr3R_4_13945001 chr3R_13945001 RAL-352 906 chr3R 13994303 13994333 chr3R 13994558 13994588 6 254 1.5 1.0 1.2 2.7 285 chr3R 13994303 intron rdx - chr3R 13994446 intron rdx - chr3R 13994588 intron rdx - chr3R_6_13990001 chr3R_13990001 RAL-352 907 chr3R 14067142 14067155 chr3R 14067221 14067234 4 78 3.5 2.0 2.8 1.1 92 chr3R 14067142 exon foxo + chr3R 14067188 intron foxo + chr3R 14067234 intron foxo + chr3R_4_14065001 chr3R_14065001 RAL-352 908 chr3R 14117454 14117466 chr3R 14117528 14117542 4 74 2.5 1.0 1.8 1.4 88 chr3R 14117454 intron Kif19A - chr3R 14117498 intron Kif19A - chr3R 14117542 intron Kif19A - chr3R_4_14115001 chr3R_14115001 RAL-352 909 chr3R 14161474 14161489 chr3R 14161557 14161580 9 89 1.5 4.0 2.8 2.4 106 chr3R 14161474 intergenic not near genes chr3R 14161527 intergenic not near genes chr3R 14161580 intergenic not near genes chr3R_9_14160001 chr3R_14160001 RAL-352 910 chr3R 14364069 14364085 chr3R 14364143 14364149 4 72 4.0 3.0 3.5 0.9 80 chr3R 14364069 intron NK7.1 - chr3R 14364109 intron NK7.1 - chr3R 14364149 intron NK7.1 - chr3R_4_14360001 chr3R_14360001 RAL-352 911 chr3R 14384632 14384639 chr3R 14384709 14384729 5 83 0.0 0.5 0.2 4.2 97 chr3R 14384632 intergenic not near genes chr3R 14384680 intergenic not near genes chr3R 14384729 intergenic not near genes chr3R_5_14380001 chr3R_14380001 RAL-352 912 chr3R 14527401 14527412 chr3R 14527478 14527487 5 76 10.0 3.0 6.5 0.7 86 chr3R 14527401 intron Pde6 - chr3R 14527444 intron Pde6 - chr3R 14527487 intron Pde6 - chr3R_5_14525001 chr3R_14525001 RAL-352 913 chr3R 14548577 14548607 chr3R 14548665 14548695 6 87 5.5 4.5 5.0 1.0 118 chr3R 14548577 intron Pde6 - chr3R 14548636 intron Pde6 - chr3R 14548695 intron Pde6 - chr3R_6_14545001 chr3R_14545001 RAL-352 914 chr3R 14560897 14560927 chr3R 14560991 14561021 5 94 1.5 3.0 2.2 1.6 124 chr3R 14560897 intergenic CG14850 + chr3R 14560959 5` UTR CG14850 + chr3R 14561021 exon CG14850 + chr3R_5_14560001 chr3R_14560001 RAL-352 915 chr3R 14579352 14579381 chr3R 14579441 14579470 7 81 5.5 3.5 4.5 1.3 118 chr3R 14579352 intron stumps + chr3R 14579411 intron stumps + chr3R 14579470 intron stumps + chr3R_7_14575001 chr3R_14575001 RAL-352 916 chr3R 14882823 14882836 chr3R 14882895 14882918 6 80 1.0 3.5 2.2 1.9 95 chr3R 14882823 intron Rrp6 - chr3R 14882870 intron Rrp6 - chr3R 14882918 exon Rrp6 - chr3R_6_14880001 chr3R_14880001 RAL-352 917 chr3R 14963232 14963252 chr3R 14963298 14963329 7 73 1.5 1.5 1.5 2.8 97 chr3R 14963232 intergenic not near genes chr3R 14963280 intergenic not near genes chr3R 14963329 intergenic not near genes chr3R_7_14960001 chr3R_14960001 RAL-352 918 chr3R 15002382 15002409 chr3R 15002476 15002508 4 92 3.5 0.0 1.8 1.4 126 chr3R 15002382 intergenic not near genes chr3R 15002445 intergenic not near genes chr3R 15002508 intergenic not near genes chr3R_4_15000001 chr3R_15000001 RAL-352 919 chr3R 15037010 15037035 chr3R 15037093 15037119 5 82 3.0 2.0 2.5 1.4 109 chr3R 15037010 intergenic RpL10Aa + chr3R 15037064 intergenic RpL10Aa + chr3R 15037119 intergenic RpL10Aa + chr3R_5_15035001 chr3R_15035001 RAL-352 920 chr3R 15041438 15041454 chr3R 15045193 15045221 Doc 5 3764 0.5 3.0 1.8 1.8 3783 chr3R 15041438 intergenic not near genes chr3R 15043330 intergenic not near genes chr3R 15045221 intergenic not near genes chr3R_5_15040001 chr3R_15040001 RAL-352 921 chr3R 15049462 15049488 chr3R 15049583 15049614 14 123 2.5 9.5 6.0 2.0 152 chr3R 15049462 intergenic not near genes chr3R 15049538 intergenic not near genes chr3R 15049614 intergenic not near genes chr3R_14_15045001 chr3R_15045001 RAL-352 922 chr3R 15079812 15079835 chr3R 15080053 15080076 pogo 4 241 2.0 1.0 1.5 1.6 264 chr3R 15079812 3` UTR CG6966 - chr3R 15079944 3` UTR CG6966 - chr3R 15080076 3` UTR CG6966 - chr3R_4_15075001 chr3R_15075001 RAL-352 923 chr3R 15162548 15162564 chr3R 15167315 15167331 F-element 5 4767 5.0 2.5 3.8 1.0 4783 chr3R 15162548 intron Gyc88E + chr3R 15164940 intron Gyc88E + chr3R 15167331 intron Gyc88E + chr3R_5_15160001 chr3R_15160001 RAL-352 924 chr3R 15416248 15416280 chr3R 15416328 15416359 7 78 0.0 3.0 1.5 2.8 111 chr3R 15416248 3` UTR Atx2 + chr3R 15416304 3` UTR Atx2 + chr3R 15416359 3` UTR Atx2 + chr3R_7_15415001 chr3R_15415001 RAL-352 925 chr3R 15601167 15601195 chr3R 15608689 15608716 412 11 7521 3.0 3.0 3.0 2.8 7549 chr3R 15601167 intergenic not near genes chr3R 15604942 intergenic not near genes chr3R 15608716 intergenic not near genes chr3R_11_15600001 chr3R_15600001 RAL-352 926 chr3R 15618743 15618761 chr3R 15626212 15626233 blood 6 7470 1.0 4.0 2.5 1.7 7490 chr3R 15618743 intergenic not near genes chr3R 15622488 intergenic not near genes chr3R 15626233 intergenic not near genes chr3R_6_15620001 chr3R_15620001 RAL-352 927 chr3R 15702872 15702892 chr3R 15703061 15703077 4 188 0.0 0.5 0.2 3.3 205 chr3R 15702872 intergenic not near genes chr3R 15702974 intergenic not near genes chr3R 15703077 intergenic not near genes chr3R_4_15700001 chr3R_15700001 RAL-352 928 chr3R 15715817 15715834 chr3R 15715901 15715902 5 81 1.0 3.0 2.0 1.7 85 chr3R 15715817 exon CG31294 - chr3R 15715860 intron CG31294 - chr3R 15715902 intron CG31294 - chr3R_5_15715001 chr3R_15715001 RAL-352 929 chr3R 15734171 15734201 chr3R 15734262 15734292 6 89 4.5 1.0 2.8 1.6 121 chr3R 15734171 intergenic not near genes chr3R 15734232 intergenic not near genes chr3R 15734292 intergenic not near genes chr3R_6_15730001 chr3R_15730001 RAL-352 930 chr3R 15753311 15753334 chr3R 15753384 15753386 4 71 2.0 1.0 1.5 1.6 75 chr3R 15753311 intergenic not near genes chr3R 15753348 intergenic not near genes chr3R 15753386 intergenic not near genes chr3R_4_15750001 chr3R_15750001 RAL-352 931 chr3R 15811498 15811535 chr3R 15811739 15811774 4 236 3.0 4.0 3.5 0.9 276 chr3R 15811498 intron alpha-Man-IIb + chr3R 15811636 intron alpha-Man-IIb + chr3R 15811774 intron,3` UTR alpha-Man-IIb +,CR45211 - chr3R_4_15810001 chr3R_15810001 RAL-352 932 chr3R 15868940 15868949 chr3R 15869019 15869029 5 78 3.5 0.0 1.8 1.8 89 chr3R 15868940 intron CG31183 - chr3R 15868984 intron CG31183 - chr3R 15869029 intron CG31183 - chr3R_5_15865001 chr3R_15865001 RAL-352 933 chr3R 15899941 15899952 chr3R 15900235 15900261 4 306 1.5 0.5 1.0 2.0 320 chr3R 15899941 intron glob1 - chr3R 15900101 intron glob1 - chr3R 15900261 intron glob1 - chr3R_4_15900001 chr3R_15900001 RAL-352 934 chr3R 16179086 16179103 chr3R 16179201 16179226 5 121 6.0 0.5 3.2 1.2 140 chr3R 16179086 intron CG8925 + chr3R 16179156 intron CG8925 + chr3R 16179226 intron CG8925 + chr3R_5_16175001 chr3R_16175001 RAL-352 935 chr3R 16225094 16225119 chr3R 16225179 16225204 4 84 0.0 0.5 0.2 3.3 110 chr3R 16225094 intergenic not near genes chr3R 16225149 intergenic not near genes chr3R 16225204 intergenic tara + chr3R_4_16225001 chr3R_16225001 RAL-352 936 chr3R 16284890 16284921 chr3R 16284969 16284998 7 76 5.5 4.5 5.0 1.2 108 chr3R 16284890 intron gish + chr3R 16284944 intron gish + chr3R 16284998 intron gish + chr3R_7_16280001 chr3R_16280001 RAL-352 937 chr3R 16472580 16472601 chr3R 16472655 16472662 6 68 10.0 6.5 8.2 0.7 82 chr3R 16472580 intergenic Gyc-89Da + chr3R 16472621 5` UTR Gyc-89Da + chr3R 16472662 5` UTR Gyc-89Da + chr3R_6_16470001 chr3R_16470001 RAL-352 938 chr3R 16663610 16663637 chr3R 16663683 16663701 13 74 2.0 4.5 3.2 3.1 91 chr3R 16663610 intron Ubx - chr3R 16663656 intron Ubx - chr3R 16663701 intron Ubx - chr3R_13_16660001 chr3R_16660001 RAL-352 939 chr3R 16756336 16756353 chr3R 16762513 16762541 diver 6 6187 1.5 2.5 2.0 2.0 6205 chr3R 16756336 intron bxd - chr3R 16759438 intron bxd - chr3R 16762541 intron bxd - chr3R_6_16755001 chr3R_16755001 RAL-352 940 chr3R 16779444 16779468 chr3R 16779527 16779529 9 83 2.5 4.5 3.5 2.0 85 chr3R 16779444 intergenic not near genes chr3R 16779486 intergenic not near genes chr3R 16779529 intergenic not near genes chr3R_9_16775001 chr3R_16775001 RAL-352 941 chr3R 17194408 17194422 chr3R 17194487 17194498 6 78 1.5 7.5 4.5 1.1 90 chr3R 17194408 intron Mur89F - chr3R 17194453 intron Mur89F - chr3R 17194498 intron Mur89F - chr3R_6_17190001 chr3R_17190001 RAL-352 942 chr3R 17232902 17232916 chr3R 17233000 17233014 5 97 1.0 1.5 1.2 2.3 112 chr3R 17232902 exon beat-IIb - chr3R 17232958 intron beat-IIb - chr3R 17233014 intron beat-IIb - chr3R_5_17230001 chr3R_17230001 RAL-352 943 chr3R 17273977 17274002 chr3R 17274077 17274093 6 101 2.0 2.0 2.0 2.0 116 chr3R 17273977 intergenic not near genes chr3R 17274035 intergenic not near genes chr3R 17274093 intergenic not near genes chr3R_6_17270001 chr3R_17270001 RAL-352 944 chr3R 17346704 17346716 chr3R 17348266 17348271 F-element 4 1561 0.5 6.0 3.2 1.0 1567 chr3R 17346704 intron beat-IIa - chr3R 17347488 intron beat-IIa - chr3R 17348271 intron beat-IIa - chr3R_4_17345001 chr3R_17345001 RAL-352 945 chr3R 17461197 17461228 chr3R 17461279 17461310 11 80 1.5 2.0 1.8 3.9 113 chr3R 17461197 intergenic not near genes chr3R 17461254 intergenic not near genes chr3R 17461310 intergenic not near genes chr3R_11_17460001 chr3R_17460001 RAL-352 946 chr3R 17470487 17470503 chr3R 17470590 17470605 5 102 4.5 3.5 4.0 1.0 118 chr3R 17470487 intergenic not near genes chr3R 17470546 intergenic not near genes chr3R 17470605 intergenic not near genes chr3R_5_17470001 chr3R_17470001 RAL-352 947 chr3R 17521571 17521579 chr3R 17521719 17521738 6 156 1.0 3.5 2.2 1.9 167 chr3R 17521571 intergenic not near genes chr3R 17521654 intergenic not near genes chr3R 17521738 intergenic not near genes chr3R_6_17520001 chr3R_17520001 RAL-352 948 chr3R 17823197 17823234 chr3R 17823273 17823286 4 70 1.5 3.5 2.5 1.1 89 chr3R 17823197 intron tinc + chr3R 17823242 intron tinc + chr3R 17823286 intron tinc + chr3R_4_17820001 chr3R_17820001 RAL-352 949 chr3R 17845215 17845217 chr3R 17845262 17845278 4 59 4.0 6.5 5.2 0.6 63 chr3R 17845215 intron tinc + chr3R 17845246 intron tinc + chr3R 17845278 intron tinc + chr3R_4_17845001 chr3R_17845001 RAL-352 950 chr3R 17925851 17925889 chr3R 17927318 17927356 hobo 15 1465 4.0 7.5 5.8 2.2 1505 chr3R 17925851 intron cpo + chr3R 17926604 intron cpo + chr3R 17927356 intron cpo + chr3R_15_17925001 chr3R_17925001 RAL-352 951 chr3R 17983211 17983233 chr3R 17983287 17983309 5 73 1.5 1.0 1.2 2.3 98 chr3R 17983211 intron cpo + chr3R 17983260 intron cpo + chr3R 17983309 intron cpo + chr3R_5_17980001 chr3R_17980001 RAL-352 952 chr3R 18032796 18032807 chr3R 18040466 18040477 opus 5 7670 0.0 0.0 0.0 5.0 7681 chr3R 18032796 intergenic not near genes chr3R 18036636 intergenic not near genes chr3R 18040477 intergenic not near genes chr3R_5_18035001 chr3R_18035001 RAL-352 953 chr3R 18126212 18126230 chr3R 18126291 18126309 6 78 5.0 4.0 4.5 1.1 97 chr3R 18126212 intron sr + chr3R 18126260 intron sr + chr3R 18126309 intron sr + chr3R_6_18125001 chr3R_18125001 RAL-352 954 chr3R 18376190 18376204 chr3R 18376299 18376313 6 109 3.0 2.0 2.5 1.7 123 chr3R 18376190 5` UTR CR44946 + chr3R 18376252 5` UTR CR44946 + chr3R 18376313 5` UTR CR44946 + chr3R_6_18375001 chr3R_18375001 RAL-352 955 chr3R 18501603 18501628 chr3R 18501684 18501691 5 76 0.0 4.0 2.0 1.7 88 chr3R 18501603 intron fru - chr3R 18501647 intron fru - chr3R 18501691 intron fru - chr3R_5_18500001 chr3R_18500001 RAL-352 956 chr3R 18528367 18528397 chr3R 18528454 18528471 7 82 2.0 1.0 1.5 2.8 104 chr3R 18528367 intron fru - chr3R 18528419 intron fru - chr3R 18528471 intron fru - chr3R_7_18525001 chr3R_18525001 RAL-352 957 chr3R 18622775 18622808 chr3R 18622851 18622871 7 69 2.0 2.0 2.0 2.3 96 chr3R 18622775 intron qin + chr3R 18622823 intron qin + chr3R 18622871 intron qin + chr3R_7_18620001 chr3R_18620001 RAL-352 958 chr3R 18697526 18697550 chr3R 18697691 18697714 5 165 1.0 4.0 2.5 1.4 188 chr3R 18697526 intergenic not near genes chr3R 18697620 intergenic not near genes chr3R 18697714 intergenic not near genes chr3R_5_18695001 chr3R_18695001 RAL-352 959 chr3R 18812087 18812107 chr3R 18812165 18812185 11 78 2.5 4.0 3.2 2.6 98 chr3R 18812087 intron CG18208 - chr3R 18812136 intron CG18208 - chr3R 18812185 intron CG18208 - chr3R_11_18810001 chr3R_18810001 RAL-352 960 chr3R 18860127 18860160 chr3R 18860213 18860227 10 82 0.5 1.0 0.8 5.6 100 chr3R 18860127 intergenic not near genes chr3R 18860177 intergenic not near genes chr3R 18860227 intergenic not near genes chr3R_10_18860001 chr3R_18860001 RAL-352 961 chr3R 18965206 18965235 chr3R 18965398 18965425 5 189 2.5 2.5 2.5 1.4 219 chr3R 18965206 intron,intron CG42613 +,CG43732 + chr3R 18965316 intron,intron CG42613 +,CG43732 + chr3R 18965425 intron,intron CG42613 +,CG43732 + chr3R_5_18965001 chr3R_18965001 RAL-352 962 chr3R 19010033 19010040 chr3R 19010105 19010128 5 79 3.0 4.0 3.5 1.1 95 chr3R 19010033 intron gukh + chr3R 19010080 intron gukh + chr3R 19010128 intron gukh + chr3R_5_19010001 chr3R_19010001 RAL-352 963 chr3R 19013019 19013047 chr3R 19013103 19013131 4 84 1.5 2.5 2.0 1.3 112 chr3R 19013019 intron gukh + chr3R 19013075 intron gukh + chr3R 19013131 intron gukh + chr3R_4_19010001 chr3R_19010001 RAL-352 964 chr3R 19033933 19033959 chr3R 19034011 19034024 11 74 2.0 4.0 3.0 2.8 91 chr3R 19033933 intron CG6026 + chr3R 19033978 intron CG6026 + chr3R 19034024 intron CG6026 + chr3R_11_19030001 chr3R_19030001 RAL-352 965 chr3R 19106822 19106834 chr3R 19106912 19106917 4 88 8.0 1.0 4.5 0.7 95 chr3R 19106822 intron CG6040 + chr3R 19106870 intron CG6040 + chr3R 19106917 intron CG6040 + chr3R_4_19105001 chr3R_19105001 RAL-352 966 chr3R 19136408 19136410 chr3R 19139794 19139871 Bari1 4 3405 45.0 7.0 26.0 0.1 3463 chr3R 19136408 exon Cyp12a4 + chr3R 19138140 intergenic not near genes chr3R 19139871 3` UTR Ppcs - chr3R_4_19135001 chr3R_19135001 RAL-352 967 chr3R 19140264 19140289 chr3R 19140712 19140728 5 442 5.5 1.0 3.2 1.2 464 chr3R 19140264 3` UTR Ppcs - chr3R 19140496 3` UTR Ppcs - chr3R 19140728 3` UTR Ppcs - chr3R_5_19140001 chr3R_19140001 RAL-352 968 chr3R 19148734 19148764 chr3R 19148816 19148845 15 81 2.0 6.5 4.2 2.9 111 chr3R 19148734 3` UTR CG5835 - chr3R 19148790 3` UTR CG5835 - chr3R 19148845 3` UTR CG5835 - chr3R_15_19145001 chr3R_19145001 RAL-352 969 chr3R 19290561 19290579 chr3R 19290621 19290633 8 66 1.5 1.5 1.5 3.2 72 chr3R 19290561 intergenic not near genes chr3R 19290597 intergenic not near genes chr3R 19290633 intergenic not near genes chr3R_8_19290001 chr3R_19290001 RAL-352 970 chr3R 19435513 19435545 chr3R 19435789 19435808 9 273 2.0 3.0 2.5 2.6 295 chr3R 19435513 intron CG31221 + chr3R 19435660 intron CG31221 + chr3R 19435808 intron CG31221 + chr3R_9_19435001 chr3R_19435001 RAL-352 971 chr3R 19502198 19502233 chr3R 19502275 19502310 6 74 1.0 1.5 1.2 2.7 112 chr3R 19502198 intron Dys + chr3R 19502254 intron Dys + chr3R 19502310 intron Dys + chr3R_6_19500001 chr3R_19500001 RAL-352 972 chr3R 19532217 19532246 chr3R 19532293 19532322 5 74 3.5 1.5 2.5 1.4 105 chr3R 19532217 intron Dys + chr3R 19532270 intron Dys + chr3R 19532322 intron Dys + chr3R_5_19530001 chr3R_19530001 RAL-352 973 chr3R 19550069 19550094 chr3R 19550177 19550188 4 100 5.0 3.0 4.0 0.8 119 chr3R 19550069 intron Dys + chr3R 19550128 intron Dys + chr3R 19550188 intron Dys + chr3R_4_19550001 chr3R_19550001 RAL-352 974 chr3R 19702321 19702353 chr3R 19702403 19702433 7 75 3.0 3.0 3.0 1.8 112 chr3R 19702321 intergenic not near genes chr3R 19702377 intergenic not near genes chr3R 19702433 intergenic not near genes chr3R_7_19700001 chr3R_19700001 RAL-352 975 chr3R 19943884 19943907 chr3R 19943962 19943981 10 76 5.0 0.0 2.5 2.9 97 chr3R 19943884 intron Hs6st - chr3R 19943932 intron Hs6st - chr3R 19943981 intron Hs6st - chr3R_10_19940001 chr3R_19940001 RAL-352 976 chr3R 19950035 19950064 chr3R 19950110 19950139 13 77 2.0 4.5 3.2 3.1 104 chr3R 19950035 intron Hs6st - chr3R 19950087 intron Hs6st - chr3R 19950139 intron Hs6st - chr3R_13_19950001 chr3R_19950001 RAL-352 977 chr3R 20060632 20060656 chr3R 20060713 20060739 7 82 5.5 0.5 3.0 1.8 107 chr3R 20060632 intergenic not near genes chr3R 20060686 intergenic not near genes chr3R 20060739 intergenic not near genes chr3R_7_20060001 chr3R_20060001 RAL-352 978 chr3R 20077035 20077066 chr3R 20077121 20077152 6 85 1.5 1.0 1.2 2.7 117 chr3R 20077035 intergenic not near genes chr3R 20077094 intergenic not near genes chr3R 20077152 intergenic not near genes chr3R_6_20075001 chr3R_20075001 RAL-352 979 chr3R 20109555 20109560 chr3R 20114760 20114766 copia 4 5206 0.5 1.5 1.0 2.0 5211 chr3R 20109555 intergenic not near genes chr3R 20112160 intergenic not near genes chr3R 20114766 intergenic CG10887 + chr3R_4_20110001 chr3R_20110001 RAL-352 980 chr3R 20124571 20124591 chr3R 20124658 20124678 4 86 2.0 2.5 2.2 1.2 107 chr3R 20124571 intergenic not near genes chr3R 20124624 intergenic not near genes chr3R 20124678 intergenic not near genes chr3R_4_20120001 chr3R_20120001 RAL-352 981 chr3R 20137203 20137225 chr3R 20137322 20137347 4 124 2.0 3.0 2.5 1.1 144 chr3R 20137203 intergenic not near genes chr3R 20137275 intergenic not near genes chr3R 20137347 intergenic not near genes chr3R_4_20135001 chr3R_20135001 RAL-352 982 chr3R 20149605 20149621 chr3R 20151725 20151746 7 2121 11.5 26.5 19.0 0.3 2141 chr3R 20149605 intergenic not near genes chr3R 20150676 intergenic not near genes chr3R 20151746 intergenic not near genes chr3R_7_20150001 chr3R_20150001 RAL-352 983 chr3R 20156708 20156718 chr3R 20165858 20165888 roo 6 9166 4.0 2.5 3.2 1.4 9180 chr3R 20156708 intergenic not near genes chr3R 20161298 intergenic not near genes chr3R 20165888 intergenic not near genes chr3R_6_20160001 chr3R_20160001 RAL-352 984 chr3R 20195709 20195721 chr3R 20195785 20195795 6 76 2.0 5.5 3.8 1.2 86 chr3R 20195709 intergenic not near genes chr3R 20195752 intergenic not near genes chr3R 20195795 intergenic not near genes chr3R_6_20195001 chr3R_20195001 RAL-352 985 chr3R 20266518 20266548 chr3R 20272989 20273014 Burdock 5 6470 2.5 4.0 3.2 1.2 6496 chr3R 20266518 intron cic + chr3R 20269766 intron cic + chr3R 20273014 intron cic + chr3R_5_20265001 chr3R_20265001 RAL-352 986 chr3R 20331004 20331016 chr3R 20331489 20331502 roo 4 486 1.0 0.0 0.5 2.7 498 chr3R 20331004 intergenic Sirt2 + chr3R 20331253 intergenic Sirt2 + chr3R 20331502 intergenic not near genes chr3R_4_20330001 chr3R_20330001 RAL-352 987 chr3R 20433112 20433126 chr3R 20433202 20433211 4 89 0.0 2.0 1.0 2.0 99 chr3R 20433112 intron Gfrl - chr3R 20433162 intron Gfrl - chr3R 20433211 intron Gfrl - chr3R_4_20430001 chr3R_20430001 RAL-352 988 chr3R 20516540 20516550 chr3R 20516896 20516906 4 356 5.5 1.0 3.2 1.0 366 chr3R 20516540 intergenic not near genes chr3R 20516723 intergenic not near genes chr3R 20516906 intergenic not near genes chr3R_4_20515001 chr3R_20515001 RAL-352 989 chr3R 20595605 20595639 chr3R 20595815 20595849 7 208 3.5 1.0 2.2 2.2 244 chr3R 20595605 intron bon + chr3R 20595727 intron bon + chr3R 20595849 intron bon + chr3R_7_20595001 chr3R_20595001 RAL-352 990 chr3R 20686968 20686987 chr3R 20687403 20687422 7 435 1.5 1.5 1.5 2.8 454 chr3R 20686968 intergenic not near genes chr3R 20687195 intergenic not near genes chr3R 20687422 intergenic not near genes chr3R_7_20685001 chr3R_20685001 RAL-352 991 chr3R 20722858 20722880 chr3R 20722984 20723007 6 126 1.5 3.5 2.5 1.7 149 chr3R 20722858 intergenic not near genes chr3R 20722932 intergenic not near genes chr3R 20723007 intergenic not near genes chr3R_6_20720001 chr3R_20720001 RAL-352 992 chr3R 20735008 20735048 chr3R 20735093 20735120 10 74 3.0 4.0 3.5 2.2 112 chr3R 20735008 intergenic not near genes chr3R 20735064 intergenic not near genes chr3R 20735120 intergenic not near genes chr3R_10_20735001 chr3R_20735001 RAL-352 993 chr3R 20787440 20787458 chr3R 20787531 20787549 6 90 2.0 0.5 1.2 2.7 109 chr3R 20787440 intron Syp + chr3R 20787494 intron Syp + chr3R 20787549 intron Syp + chr3R_6_20785001 chr3R_20785001 RAL-352 994 chr3R 20854494 20854517 chr3R 20859284 20859307 Doc 5 4786 8.5 2.5 5.5 0.8 4813 chr3R 20854494 intron Ir93a - chr3R 20856900 intron Ir93a - chr3R 20859307 exon Ir93a - chr3R_5_20855001 chr3R_20855001 RAL-352 995 chr3R 21014026 21014038 chr3R 21014104 21014116 4 77 1.5 2.0 1.8 1.4 90 chr3R 21014026 3` UTR Calx + chr3R 21014071 3` UTR Calx + chr3R 21014116 3` UTR Calx + chr3R_4_21010001 chr3R_21010001 RAL-352 996 chr3R 21141684 21141705 chr3R 21150159 21150184 Tirant 9 8475 3.0 2.5 2.8 2.4 8500 chr3R 21141684 intron SNF4Agamma + chr3R 21145934 intron SNF4Agamma + chr3R 21150184 intron SNF4Agamma + chr3R_9_21145001 chr3R_21145001 RAL-352 997 chr3R 21186027 21186053 chr3R 21186127 21186153 4 100 3.5 3.5 3.5 0.9 126 chr3R 21186027 intron SNF4Agamma + chr3R 21186090 intron SNF4Agamma + chr3R 21186153 intron SNF4Agamma + chr3R_4_21185001 chr3R_21185001 RAL-352 998 chr3R 21330812 21330831 chr3R 21330896 21330920 4 85 2.0 0.5 1.2 1.8 108 chr3R 21330812 intron CG16791 - chr3R 21330866 intron CG16791 - chr3R 21330920 intron CG16791 - chr3R_4_21330001 chr3R_21330001 RAL-352 999 chr3R 21494682 21494714 chr3R 21494762 21494794 7 79 2.5 1.5 2.0 2.3 112 chr3R 21494682 intergenic not near genes chr3R 21494738 intergenic not near genes chr3R 21494794 intergenic not near genes chr3R_7_21490001 chr3R_21490001 RAL-352 1000 chr3R 21505223 21505254 chr3R 21505304 21505336 8 77 3.0 3.0 3.0 2.0 113 chr3R 21505223 intron C15 + chr3R 21505280 intron C15 + chr3R 21505336 intron C15 + chr3R_8_21505001 chr3R_21505001 RAL-352 1001 chr3R 21518256 21518272 chr3R 21518340 21518344 5 82 0.0 4.0 2.0 1.7 88 chr3R 21518256 intergenic not near genes chr3R 21518300 intergenic not near genes chr3R 21518344 intergenic not near genes chr3R_5_21515001 chr3R_21515001 RAL-352 1002 chr3R 21613441 21613476 chr3R 21613522 21613557 12 79 3.0 2.0 2.5 3.4 116 chr3R 21613441 intron InR - chr3R 21613499 intron InR - chr3R 21613557 intron InR - chr3R_12_21610001 chr3R_21610001 RAL-352 1003 chr3R 21641277 21641289 chr3R 21641334 21641363 5 69 4.0 4.5 4.2 1.0 86 chr3R 21641277 intron E2f - chr3R 21641320 intron E2f - chr3R 21641363 intron E2f - chr3R_5_21640001 chr3R_21640001 RAL-352 1004 chr3R 21652551 21652574 chr3R 21652631 21652654 5 80 1.0 0.5 0.8 2.8 103 chr3R 21652551 intron E2f - chr3R 21652602 intron E2f - chr3R 21652654 intron E2f - chr3R_5_21650001 chr3R_21650001 RAL-352 1005 chr3R 21761135 21761138 chr3R 21768513 21768530 mdg1 4 7384 6.0 5.0 5.5 0.6 7395 chr3R 21761135 exon CG42335 + chr3R 21764832 intron CG42335 + chr3R 21768530 exon CG42335 + chr3R_4_21760001 chr3R_21760001 RAL-352 1006 chr3R 21761140 21761153 chr3R 21768510 21768537 mdg1 9 7381 3.0 4.5 3.8 1.9 7397 chr3R 21761140 exon CG42335 + chr3R 21764838 intron CG42335 + chr3R 21768537 exon CG42335 + chr3R_9_21760001 chr3R_21760001 RAL-352 1007 chr3R 21794468 21794490 chr3R 21794544 21794552 13 82 2.0 3.0 2.5 3.7 84 chr3R 21794468 intron CASK - chr3R 21794510 intron CASK - chr3R 21794552 intron CASK - chr3R_13_21790001 chr3R_21790001 RAL-352 1008 chr3R 8339241 8339246 chr3R 21907534 21907534 4 13568289 21.5 26.5 24.0 0.2 13568293 chr3R 8339241 intergenic not near genes chr3R 15123388 intron CG42788 - chr3R 21907534 intergenic CG6678 + chr3R_4_15120001 chr3R_15120001 RAL-352 1009 chr3R 21907534 21907534 chr3R 28831801 28831802 11 6924268 26.0 20.0 23.0 0.5 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_11_25365001 chr3R_25365001 RAL-352 1010 chr3R 21907535 21907535 chr3R 28831801 28831802 16 6924266 25.5 20.0 22.8 0.7 6924267 chr3R 21907535 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_16_25365001 chr3R_25365001 RAL-352 1011 chr3R 8339246 8339247 chr3R 21907536 21907536 5 13568290 21.5 26.5 24.0 0.2 13568290 chr3R 8339246 intergenic not near genes chr3R 15123391 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_5_15120001 chr3R_15120001 RAL-352 1012 chr3R 21907536 21907536 chr3R 28831801 28831804 14 6924266 25.0 20.0 22.5 0.6 6924268 chr3R 21907536 intergenic CG6678 + chr3R 25369670 intron Fur1 - chr3R 28831804 intron WASp - chr3R_14_25365001 chr3R_25365001 RAL-352 1013 chr3R 21924012 21924049 chr3R 21924100 21924126 5 85 3.5 1.0 2.2 1.6 114 chr3R 21924012 intergenic not near genes chr3R 21924069 intergenic not near genes chr3R 21924126 intergenic not near genes chr3R_5_21920001 chr3R_21920001 RAL-352 1014 chr3R 21937229 21937233 chr3R 21937306 21937310 4 76 4.5 1.5 3.0 1.0 81 chr3R 21937229 intergenic not near genes chr3R 21937270 intergenic not near genes chr3R 21937310 intergenic not near genes chr3R_4_21935001 chr3R_21935001 RAL-352 1015 chr3R 21952138 21952167 chr3R 21952222 21952252 6 84 1.0 1.5 1.2 2.7 114 chr3R 21952138 intron Eip93F + chr3R 21952195 intron Eip93F + chr3R 21952252 intron Eip93F + chr3R_6_21950001 chr3R_21950001 RAL-352 1016 chr3R 22234691 22234713 chr3R 22236006 22236032 pogo 4 1318 1.5 1.0 1.2 1.8 1341 chr3R 22234691 intron SKIP + chr3R 22235362 intron SKIP + chr3R 22236032 intron SKIP + chr3R_4_22235001 chr3R_22235001 RAL-352 1017 chr3R 22428587 22428609 chr3R 22428652 22428683 7 65 3.5 3.0 3.2 1.7 96 chr3R 22428587 intron CG13847 - chr3R 22428635 intron CG13847 - chr3R 22428683 intron CG13847 - chr3R_7_22425001 chr3R_22425001 RAL-352 1018 chr3R 22433093 22433106 chr3R 22433193 22433196 4 97 2.5 3.5 3.0 1.0 103 chr3R 22433093 intron CG13847 - chr3R 22433144 intron CG13847 - chr3R 22433196 intron CG13847 - chr3R_4_22430001 chr3R_22430001 RAL-352 1019 chr3R 22450543 22450573 chr3R 22453183 22453210 NOF 12 2632 3.0 4.5 3.8 2.5 2667 chr3R 22450543 intron CG34376 + chr3R 22451876 intron CG34376 + chr3R 22453210 intron CG34376 + chr3R_12_22450001 chr3R_22450001 RAL-352 1020 chr3R 22492383 22492412 chr3R 22492463 22492493 8 78 2.0 3.0 2.5 2.3 110 chr3R 22492383 intergenic CG7045 + chr3R 22492438 intergenic CG7045 + chr3R 22492493 intergenic CG7045 +,CG7046 + chr3R_8_22490001 chr3R_22490001 RAL-352 1021 chr3R 22538444 22538468 chr3R 22538529 22538552 4 83 2.0 1.5 1.8 1.4 108 chr3R 22538444 intron CG5326 - chr3R 22538498 intron CG5326 - chr3R 22538552 intron CG5326 - chr3R_4_22535001 chr3R_22535001 RAL-352 1022 chr3R 22769089 22769126 chr3R 22769166 22769202 8 75 3.5 3.0 3.2 1.9 113 chr3R 22769089 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769146 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769202 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R_8_22765001 chr3R_22765001 RAL-352 1023 chr3R 22797766 22797937 chr3R 22797847 22798033 13 87 0.0 0.0 0.0 13.0 267 chr3R 22797766 intergenic not near genes chr3R 22797900 intergenic not near genes chr3R 22798033 intergenic not near genes chr3R_13_22795001 chr3R_22795001 RAL-352 1024 chr3R 22860157 22860176 chr3R 22860245 22860262 6 87 1.5 3.5 2.5 1.7 105 chr3R 22860157 intergenic not near genes chr3R 22860210 intergenic not near genes chr3R 22860262 intergenic not near genes chr3R_6_22860001 chr3R_22860001 RAL-352 1025 chr3R 22888195 22888221 chr3R 22888467 22888482 7 266 5.0 0.5 2.8 1.8 287 chr3R 22888195 intergenic not near genes chr3R 22888338 intergenic not near genes chr3R 22888482 intergenic not near genes chr3R_7_22885001 chr3R_22885001 RAL-352 1026 chr3R 22919174 22919185 chr3R 22919255 22919270 4 87 2.0 2.0 2.0 1.3 96 chr3R 22919174 intron klg + chr3R 22919222 intron klg + chr3R 22919270 intron klg + chr3R_4_22915001 chr3R_22915001 RAL-352 1027 chr3R 22927868 22927904 chr3R 22927963 22927989 14 90 2.5 4.5 3.5 3.1 121 chr3R 22927868 intron klg + chr3R 22927928 intron klg + chr3R 22927989 intron klg + chr3R_14_22925001 chr3R_22925001 RAL-352 1028 chr3R 22990355 22990373 chr3R 22990610 22990627 7 254 2.5 7.5 5.0 1.2 272 chr3R 22990355 intron,exon Nha2 -,Or94b + chr3R 22990491 intron,intron Nha2 -,Or94b + chr3R 22990627 intron Nha2 - chr3R_7_22990001 chr3R_22990001 RAL-352 1029 chr3R 22990378 22990386 chr3R 22990609 22990626 6 236 1.0 7.5 4.2 1.2 248 chr3R 22990378 intron,exon Nha2 -,Or94b + chr3R 22990502 intron,intron Nha2 -,Or94b + chr3R 22990626 intron Nha2 - chr3R_6_22990001 chr3R_22990001 RAL-352 1030 chr3R 23016205 23016227 chr3R 23016282 23016302 8 74 3.0 4.0 3.5 1.8 97 chr3R 23016205 intergenic not near genes chr3R 23016254 intergenic not near genes chr3R 23016302 intergenic not near genes chr3R_8_23015001 chr3R_23015001 RAL-352 1031 chr3R 23180192 23180217 chr3R 23180270 23180300 13 81 3.5 3.5 3.5 2.9 108 chr3R 23180192 intron Irk1 + chr3R 23180246 intron Irk1 + chr3R 23180300 intron Irk1 + chr3R_13_23180001 chr3R_23180001 RAL-352 1032 chr3R 23182695 23182702 chr3R 23182768 23182778 5 78 0.0 1.5 0.8 2.8 83 chr3R 23182695 intron Irk1 + chr3R 23182736 intron Irk1 + chr3R 23182778 intron Irk1 + chr3R_5_23180001 chr3R_23180001 RAL-352 1033 chr3R 23277348 23277368 chr3R 23277437 23277454 7 88 0.0 1.5 0.8 3.9 106 chr3R 23277348 intron orb - chr3R 23277401 intron orb - chr3R 23277454 intron orb - chr3R_7_23275001 chr3R_23275001 RAL-352 1034 chr3R 23303630 23303660 chr3R 23303708 23303738 5 78 1.0 2.0 1.5 2.0 108 chr3R 23303630 intron pnt - chr3R 23303684 intron pnt - chr3R 23303738 intron pnt - chr3R_5_23300001 chr3R_23300001 RAL-352 1035 chr3R 23342639 23342665 chr3R 23342769 23342800 12 132 5.5 2.5 4.0 2.4 161 chr3R 23342639 intron pnt - chr3R 23342720 intron pnt - chr3R 23342800 intron pnt - chr3R_12_23340001 chr3R_23340001 RAL-352 1036 chr3R 23533533 23533541 chr3R 23533624 23533633 4 92 11.5 15.0 13.2 0.3 100 chr3R 23533533 exon CG10170 - chr3R 23533583 exon CG10170 - chr3R 23533633 exon CG10170 - chr3R_4_23530001 chr3R_23530001 RAL-352 1037 chr3R 23557875 23557894 chr3R 23557953 23557972 6 77 4.0 4.0 4.0 1.2 97 chr3R 23557875 intron beat-IV + chr3R 23557924 intron beat-IV + chr3R 23557972 intron beat-IV + chr3R_6_23555001 chr3R_23555001 RAL-352 1038 chr3R 23558403 23558423 chr3R 23560180 23560204 Bari1 6 1780 2.0 2.5 2.2 1.9 1801 chr3R 23558403 intron beat-IV + chr3R 23559304 intron beat-IV + chr3R 23560204 intron beat-IV + chr3R_6_23555001 chr3R_23555001 RAL-352 1039 chr3R 23572766 23572778 chr3R 23572886 23572897 7 118 4.0 4.0 4.0 1.4 131 chr3R 23572766 intron beat-IV + chr3R 23572832 intron beat-IV + chr3R 23572897 intron beat-IV + chr3R_7_23570001 chr3R_23570001 RAL-352 1040 chr3R 23608577 23608594 chr3R 23608705 23608712 5 126 4.5 5.0 4.8 0.9 135 chr3R 23608577 intron CG31145 - chr3R 23608644 intron CG31145 - chr3R 23608712 intron CG31145 - chr3R_5_23605001 chr3R_23605001 RAL-352 1041 chr3R 23608595 23608599 chr3R 23608701 23608719 5 116 3.0 4.5 3.8 1.0 124 chr3R 23608595 intron CG31145 - chr3R 23608657 intron CG31145 - chr3R 23608719 exon CG31145 - chr3R_5_23605001 chr3R_23605001 RAL-352 1042 chr3R 23608600 23608607 chr3R 23608700 23608732 5 111 2.5 4.5 3.5 1.1 132 chr3R 23608600 intron CG31145 - chr3R 23608666 intron CG31145 - chr3R 23608732 exon CG31145 - chr3R_5_23605001 chr3R_23605001 RAL-352 1043 chr3R 23676044 23676075 chr3R 23676120 23676151 6 76 0.5 2.5 1.5 2.4 107 chr3R 23676044 intergenic not near genes chr3R 23676098 intergenic not near genes chr3R 23676151 intergenic not near genes chr3R_6_23675001 chr3R_23675001 RAL-352 1044 chr3R 23684706 23684727 chr3R 23685185 23685213 roo 4 480 4.0 9.5 6.8 0.5 507 chr3R 23684706 intron CG18754 + chr3R 23684960 intron CG18754 + chr3R 23685213 exon CG18754 + chr3R_4_23680001 chr3R_23680001 RAL-352 1045 chr3R 23688473 23688504 chr3R 23688564 23688591 11 88 2.0 4.5 3.2 2.6 118 chr3R 23688473 intergenic SPE + chr3R 23688532 intergenic SPE +,CG10254 - chr3R 23688591 intergenic CG10254 -,SPE + chr3R_11_23685001 chr3R_23685001 RAL-352 1046 chr3R 23714717 23714745 chr3R 23714809 23714835 4 92 0.5 1.5 1.0 2.0 118 chr3R 23714717 intron nau - chr3R 23714776 intron nau - chr3R 23714835 intron nau - chr3R_4_23710001 chr3R_23710001 RAL-352 1047 chr3R 23820649 23820668 chr3R 23820733 23820752 7 84 1.5 6.0 3.8 1.5 103 chr3R 23820649 5` UTR CG34355 + chr3R 23820700 5` UTR CG34355 + chr3R 23820752 5` UTR CG34355 + chr3R_7_23820001 chr3R_23820001 RAL-352 1048 chr3R 23835422 23835435 chr3R 23844567 23844585 roo 5 9147 0.5 3.5 2.0 1.7 9163 chr3R 23835422 intron CG34355 + chr3R 23840004 intron CG34355 + chr3R 23844585 intron CG34355 + chr3R_5_23840001 chr3R_23840001 RAL-352 1049 chr3R 23944911 23944935 chr3R 23944996 23945020 5 85 2.5 1.5 2.0 1.7 109 chr3R 23944911 intron CG12268 - chr3R 23944966 intron CG12268 - chr3R 23945020 exon CG12268 - chr3R_5_23940001 chr3R_23940001 RAL-352 1050 chr3R 24025580 24025604 chr3R 24025656 24025681 5 69 2.0 2.0 2.0 1.7 101 chr3R 24025580 intron KrT95D - chr3R 24025630 intron KrT95D - chr3R 24025681 intron KrT95D - chr3R_5_24025001 chr3R_24025001 RAL-352 1051 chr3R 24072088 24072120 chr3R 24072525 24072532 jockey 7 431 2.5 7.5 5.0 1.2 444 chr3R 24072088 intron 4EHP - chr3R 24072310 intron 4EHP - chr3R 24072532 intron 4EHP - chr3R_7_24070001 chr3R_24070001 RAL-352 1052 chr3R 24207225 24207247 chr3R 24212288 24212323 flea 9 5071 5.5 7.0 6.2 1.2 5098 chr3R 24207225 intron twin - chr3R 24209774 intron twin - chr3R 24212323 intron twin - chr3R_9_24205001 chr3R_24205001 RAL-352 1053 chr3R 24431605 24431627 chr3R 24431684 24431706 4 79 1.0 0.0 0.5 2.7 101 chr3R 24431605 intron nAChRalpha1 - chr3R 24431656 intron nAChRalpha1 - chr3R 24431706 intron nAChRalpha1 - chr3R_4_24430001 chr3R_24430001 RAL-352 1054 chr3R 24433493 24433505 chr3R 24433571 24433584 6 78 1.5 4.0 2.8 1.6 91 chr3R 24433493 intron nAChRalpha1 - chr3R 24433538 intron nAChRalpha1 - chr3R 24433584 intron nAChRalpha1 - chr3R_6_24430001 chr3R_24430001 RAL-352 1055 chr3R 24493281 24493304 chr3R 24493510 24493533 BS 6 227 2.0 3.0 2.5 1.7 252 chr3R 24493281 intergenic not near genes chr3R 24493407 intergenic not near genes chr3R 24493533 intergenic not near genes chr3R_6_24490001 chr3R_24490001 RAL-352 1056 chr3R 24671218 24671242 chr3R 24671295 24671299 9 68 1.5 2.5 2.0 3.0 81 chr3R 24671218 intron slo + chr3R 24671258 intron slo + chr3R 24671299 intron slo + chr3R_9_24670001 chr3R_24670001 RAL-352 1057 chr3R 24730108 24730118 chr3R 24732469 24732496 Doc 5 2372 2.5 0.0 1.2 2.3 2388 chr3R 24730108 intron tok + chr3R 24731302 intron tok + chr3R 24732496 intron tok + chr3R_5_24730001 chr3R_24730001 RAL-352 1058 chr3R 24927125 24927163 chr3R 24931916 24931954 Doc 7 4788 2.0 1.5 1.8 2.5 4829 chr3R 24927125 intergenic Trf4-2 + chr3R 24929540 intergenic not near genes chr3R 24931954 intergenic CG11771 + chr3R_7_24925001 chr3R_24925001 RAL-352 1059 chr3R 24957481 24957513 chr3R 24957561 24957589 11 78 2.0 2.0 2.0 3.7 108 chr3R 24957481 intergenic not near genes chr3R 24957535 intergenic not near genes chr3R 24957589 intergenic not near genes chr3R_11_24955001 chr3R_24955001 RAL-352 1060 chr3R 24974916 24974929 chr3R 24974995 24975008 6 78 3.0 6.0 4.5 1.1 92 chr3R 24974916 intergenic not near genes chr3R 24974962 intergenic not near genes chr3R 24975008 intergenic not near genes chr3R_6_24970001 chr3R_24970001 RAL-352 1061 chr3R 25178408 25178431 chr3R 25178496 25178512 8 85 2.0 6.0 4.0 1.6 104 chr3R 25178408 intron lobo - chr3R 25178460 intron lobo - chr3R 25178512 intron lobo - chr3R_8_25175001 chr3R_25175001 RAL-352 1062 chr3R 25302682 25302712 chr3R 25302931 25302933 11 244 0.0 6.0 3.0 2.8 251 chr3R 25302682 exon CG31370 + chr3R 25302808 exon CG31370 + chr3R 25302933 exon CG31370 + chr3R_11_25300001 chr3R_25300001 RAL-352 1063 chr3R 25328990 25329013 chr3R 25329466 25329492 8 477 4.0 5.0 4.5 1.5 502 chr3R 25328990 exon CHKov1 - chr3R 25329241 5` UTR CHKov1 - chr3R 25329492 intergenic CHKov2 -,CHKov1 - chr3R_8_25325001 chr3R_25325001 RAL-352 1064 chr3R 25362204 25362228 chr3R 25362397 25362424 8 194 4.5 2.0 3.2 1.9 220 chr3R 25362204 intron Fur1 - chr3R 25362314 intron Fur1 - chr3R 25362424 intron Fur1 - chr3R_8_25360001 chr3R_25360001 RAL-352 1065 chr3R 25377096 25377125 chr3R 25377356 25377386 13 264 1.0 1.0 1.0 6.5 290 chr3R 25377096 intron Fur1 - chr3R 25377241 intron Fur1 - chr3R 25377386 intron Fur1 - chr3R_13_25375001 chr3R_25375001 RAL-352 1066 chr3R 25570042 25570078 chr3R 25570132 25570169 4 82 4.5 0.5 2.5 1.1 127 chr3R 25570042 intron msi + chr3R 25570106 intron msi + chr3R 25570169 intron msi + chr3R_4_25570001 chr3R_25570001 RAL-352 1067 chr3R 25669064 25669097 chr3R 25669158 25669191 11 91 0.5 1.5 1.0 5.5 127 chr3R 25669064 intron Lgr3 + chr3R 25669128 intron Lgr3 + chr3R 25669191 intron Lgr3 + chr3R_11_25665001 chr3R_25665001 RAL-352 1068 chr3R 25689128 25689164 chr3R 25689235 25689263 13 107 1.5 3.5 2.5 3.7 135 chr3R 25689128 intergenic not near genes chr3R 25689196 intergenic not near genes chr3R 25689263 intergenic not near genes chr3R_13_25685001 chr3R_25685001 RAL-352 1069 chr3R 25765876 25765909 chr3R 25765954 25765978 17 73 7.5 2.5 5.0 2.8 102 chr3R 25765876 intergenic not near genes chr3R 25765927 intergenic not near genes chr3R 25765978 intergenic not near genes chr3R_17_25765001 chr3R_25765001 RAL-352 1070 chr3R 25801281 25801288 chr3R 25802264 25802272 5 984 1.0 6.5 3.8 1.0 991 chr3R 25801281 intergenic not near genes chr3R 25801776 intergenic not near genes chr3R 25802272 intergenic not near genes chr3R_5_25800001 chr3R_25800001 RAL-352 1071 chr3R 25801289 25801294 chr3R 25802262 25802278 4 981 1.0 5.5 3.2 1.0 989 chr3R 25801289 intergenic not near genes chr3R 25801784 intergenic not near genes chr3R 25802278 intergenic not near genes chr3R_4_25800001 chr3R_25800001 RAL-352 1072 chr3R 25832699 25832719 chr3R 25841879 25841880 roo 8 9176 4.5 6.5 5.5 1.2 9181 chr3R 25832699 exon alpha4GT2 + chr3R 25837290 intron alpha4GT2 + chr3R 25841880 exon alpha4GT2 + chr3R_8_25835001 chr3R_25835001 RAL-352 1073 chr3R 26093845 26093873 chr3R 26093922 26093951 10 75 1.0 4.0 2.5 2.9 106 chr3R 26093845 intron dys - chr3R 26093898 intron dys - chr3R 26093951 intron dys - chr3R_10_26090001 chr3R_26090001 RAL-352 1074 chr3R 26104073 26104090 chr3R 26105152 26105179 7 1081 17.0 10.5 13.8 0.5 1106 chr3R 26104073 intergenic not near genes chr3R 26104626 intergenic not near genes chr3R 26105179 intergenic not near genes chr3R_7_26100001 chr3R_26100001 RAL-352 1075 chr3R 26121956 26121964 chr3R 26122046 26122059 6 96 0.0 2.5 1.2 2.7 103 chr3R 26121956 intron CG31324 + chr3R 26122008 intron CG31324 + chr3R 26122059 intron CG31324 + chr3R_6_26120001 chr3R_26120001 RAL-352 1076 chr3R 26126271 26126287 chr3R 26126375 26126391 6 100 2.5 2.0 2.2 1.9 120 chr3R 26126271 intron CG31324 + chr3R 26126331 intron CG31324 + chr3R 26126391 intron CG31324 + chr3R_6_26125001 chr3R_26125001 RAL-352 1077 chr3R 26166178 26166207 chr3R 26166263 26166289 6 82 1.0 1.0 1.0 3.0 111 chr3R 26166178 intergenic not near genes chr3R 26166234 intergenic not near genes chr3R 26166289 intergenic not near genes chr3R_6_26165001 chr3R_26165001 RAL-352 1078 chr3R 26265813 26265838 chr3R 26265901 26265926 9 86 6.0 1.5 3.8 1.9 113 chr3R 26265813 intron CG6154 + chr3R 26265870 intron CG6154 + chr3R 26265926 intron CG6154 + chr3R_9_26265001 chr3R_26265001 RAL-352 1079 chr3R 26376322 26376354 chr3R 26385482 26385499 roo 8 9156 1.0 0.5 0.8 4.4 9177 chr3R 26376322 intergenic not near genes chr3R 26380910 intergenic not near genes chr3R 26385499 intergenic not near genes chr3R_8_26380001 chr3R_26380001 RAL-352 1080 chr3R 26425882 26425909 chr3R 26425958 26425976 8 75 4.0 4.5 4.2 1.5 94 chr3R 26425882 intron CR31084 + chr3R 26425929 intron CR31084 + chr3R 26425976 intron CR31084 + chr3R_8_26425001 chr3R_26425001 RAL-352 1081 chr3R 26450516 26450533 chr3R 26450613 26450631 6 97 5.0 1.5 3.2 1.4 115 chr3R 26450516 exon Hex-t1 + chr3R 26450574 3` UTR Hex-t1 + chr3R 26450631 intergenic Hex-t2 +,Hex-t1 + chr3R_6_26450001 chr3R_26450001 RAL-352 1082 chr3R 26510523 26510534 chr3R 26519577 26519588 roo 4 9054 2.0 2.5 2.2 1.2 9065 chr3R 26510523 intron plum - chr3R 26515056 intron plum - chr3R 26519588 intron,5` UTR plum -,CR45226 + chr3R_4_26515001 chr3R_26515001 RAL-352 1083 chr3R 26553217 26553239 chr3R 26553710 26553720 8 496 5.0 1.0 3.0 2.0 503 chr3R 26553217 intron scrib + chr3R 26553468 intron scrib + chr3R 26553720 intron scrib + chr3R_8_26550001 chr3R_26550001 RAL-352 1084 chr3R 26558336 26558361 chr3R 26565640 26565668 Stalker4 8 7307 5.0 2.5 3.8 1.7 7332 chr3R 26558336 intron scrib + chr3R 26562002 intron scrib + chr3R 26565668 intron scrib + chr3R_8_26560001 chr3R_26560001 RAL-352 1085 chr3R 26607740 26607770 chr3R 26607816 26607846 4 75 2.5 1.0 1.8 1.4 106 chr3R 26607740 5` UTR CR44951 + chr3R 26607793 5` UTR CR44951 + chr3R 26607846 5` UTR CR44951 + chr3R_4_26605001 chr3R_26605001 RAL-352 1086 chr3R 26641640 26641660 chr3R 26641727 26641739 4 85 4.0 4.5 4.2 0.8 99 chr3R 26641640 intergenic not near genes chr3R 26641690 intergenic not near genes chr3R 26641739 intergenic not near genes chr3R_4_26640001 chr3R_26640001 RAL-352 1087 chr3R 26642744 26642761 chr3R 26643121 26643147 jockey 4 387 1.0 3.0 2.0 1.3 403 chr3R 26642744 intergenic not near genes chr3R 26642946 intergenic not near genes chr3R 26643147 intergenic not near genes chr3R_4_26640001 chr3R_26640001 RAL-352 1088 chr3R 26660649 26660678 chr3R 26660732 26660744 8 72 3.0 3.0 3.0 2.0 95 chr3R 26660649 intron beat-VII - chr3R 26660696 intron beat-VII - chr3R 26660744 intron beat-VII - chr3R_8_26660001 chr3R_26660001 RAL-352 1089 chr3R 26695576 26695594 chr3R 26695679 26695688 5 100 2.0 3.0 2.5 1.4 112 chr3R 26695576 intergenic not near genes chr3R 26695632 intergenic not near genes chr3R 26695688 intergenic not near genes chr3R_5_26695001 chr3R_26695001 RAL-352 1090 chr3R 26750937 26750949 chr3R 26751064 26751076 4 127 3.0 0.0 1.5 1.6 139 chr3R 26750937 intergenic not near genes chr3R 26751006 intergenic not near genes chr3R 26751076 intergenic not near genes chr3R_4_26750001 chr3R_26750001 RAL-352 1091 chr3R 26770240 26770265 chr3R 26770317 26770342 5 73 3.0 1.5 2.2 1.6 102 chr3R 26770240 intergenic CR45563 + chr3R 26770291 intergenic CR45563 + chr3R 26770342 intergenic not near genes chr3R_5_26770001 chr3R_26770001 RAL-352 1092 chr3R 26810554 26810586 chr3R 26811039 26811071 roo 7 485 2.0 5.5 3.8 1.5 517 chr3R 26810554 intron Tl + chr3R 26810812 intron Tl + chr3R 26811071 intron Tl + chr3R_7_26810001 chr3R_26810001 RAL-352 1093 chr3R 26854785 26854805 chr3R 26855291 26855301 5 503 5.0 4.5 4.8 0.9 516 chr3R 26854785 intron Lerp - chr3R 26855043 intron Lerp - chr3R 26855301 intron Lerp - chr3R_5_26855001 chr3R_26855001 RAL-352 1094 chr3R 26917301 26917318 chr3R 26917377 26917400 5 79 0.5 3.5 2.0 1.7 99 chr3R 26917301 intron sda + chr3R 26917350 intron sda + chr3R 26917400 intron sda + chr3R_5_26915001 chr3R_26915001 RAL-352 1095 chr3R 27140516 27140548 chr3R 27148123 27148152 412 9 7606 9.0 5.0 7.0 1.1 7636 chr3R 27140516 intron CG6051 - chr3R 27144334 intron CG6051 - chr3R 27148152 intron CG6051 - chr3R_9_27140001 chr3R_27140001 RAL-352 1096 chr3R 27241401 27241419 chr3R 27244701 27244722 5 3302 30.0 35.5 32.8 0.1 3321 chr3R 27241401 exon CG17991 + chr3R 27243062 exon CG18766 - chr3R 27244722 intron CG18766 - chr3R_5_27240001 chr3R_27240001 RAL-352 1097 chr3R 27393674 27393696 chr3R 27393956 27393978 8 282 5.5 4.5 5.0 1.3 304 chr3R 27393674 intron side - chr3R 27393826 intron side - chr3R 27393978 intron side - chr3R_8_27390001 chr3R_27390001 RAL-352 1098 chr3R 27457869 27457899 chr3R 27457961 27457984 7 90 2.0 0.0 1.0 3.5 115 chr3R 27457869 intergenic not near genes chr3R 27457926 intergenic not near genes chr3R 27457984 intergenic not near genes chr3R_7_27455001 chr3R_27455001 RAL-352 1099 chr3R 27595058 27595083 chr3R 27595141 27595166 6 81 3.0 1.5 2.2 1.9 108 chr3R 27595058 intron CG5639 - chr3R 27595112 intron CG5639 - chr3R 27595166 intron CG5639 - chr3R_6_27595001 chr3R_27595001 RAL-352 1100 chr3R 27619706 27619726 chr3R 27619818 27619841 15 111 4.5 3.0 3.8 3.1 135 chr3R 27619706 intron Tusp + chr3R 27619774 intron Tusp + chr3R 27619841 intron Tusp + chr3R_15_27615001 chr3R_27615001 RAL-352 1101 chr3R 27622241 27622259 chr3R 27622327 27622336 7 89 3.0 4.5 3.8 1.5 95 chr3R 27622241 intron Tusp + chr3R 27622288 intron Tusp + chr3R 27622336 intron Tusp + chr3R_7_27620001 chr3R_27620001 RAL-352 1102 chr3R 27627089 27627120 chr3R 27627191 27627205 9 94 5.5 6.5 6.0 1.3 116 chr3R 27627089 intron Tusp + chr3R 27627147 intron Tusp + chr3R 27627205 intron Tusp + chr3R_9_27625001 chr3R_27625001 RAL-352 1103 chr3R 27725567 27725597 chr3R 27731009 27731038 I-element 8 5438 3.5 1.5 2.5 2.3 5471 chr3R 27725567 intergenic not near genes chr3R 27728302 intergenic not near genes chr3R 27731038 intergenic not near genes chr3R_8_27725001 chr3R_27725001 RAL-352 1104 chr3R 27799942 27799961 chr3R 27800023 27800043 9 81 1.5 4.5 3.0 2.2 101 chr3R 27799942 intron CG34353 - chr3R 27799992 intron CG34353 - chr3R 27800043 intron CG34353 - chr3R_9_27795001 chr3R_27795001 RAL-352 1105 chr3R 27862956 27862987 chr3R 27868260 27868292 Transpac 5 5302 1.0 1.5 1.2 2.3 5336 chr3R 27862956 intron CG34353 - chr3R 27865624 intron CG34353 - chr3R 27868292 intron CG34353 - chr3R_5_27865001 chr3R_27865001 RAL-352 1106 chr3R 27875702 27875732 chr3R 27882757 27882779 297 11 7053 4.0 3.0 3.5 2.4 7077 chr3R 27875702 intron CG34353 - chr3R 27879240 intron CG34353 - chr3R 27882779 intron CG34353 - chr3R_11_27875001 chr3R_27875001 RAL-352 1107 chr3R 28035493 28035517 chr3R 28035568 28035593 7 74 1.5 3.5 2.5 2.0 100 chr3R 28035493 intron CG34362 + chr3R 28035543 intron CG34362 + chr3R 28035593 intron CG34362 + chr3R_7_28035001 chr3R_28035001 RAL-352 1108 chr3R 28068505 28068532 chr3R 28073947 28073962 I-element 4 5439 2.5 3.0 2.8 1.1 5457 chr3R 28068505 intron CG34362 + chr3R 28071234 intron CG34362 + chr3R 28073962 intron CG34362 + chr3R_4_28070001 chr3R_28070001 RAL-352 1109 chr3R 28083883 28083887 chr3R 28083979 28083983 4 96 5.5 1.5 3.5 0.9 100 chr3R 28083883 intron CG34362 + chr3R 28083933 intron CG34362 + chr3R 28083983 intron CG34362 + chr3R_4_28080001 chr3R_28080001 RAL-352 1110 chr3R 28102589 28102594 chr3R 28102815 28102832 5 235 2.5 5.5 4.0 1.0 243 chr3R 28102589 intergenic not near genes chr3R 28102710 intergenic not near genes chr3R 28102832 intergenic not near genes chr3R_5_28100001 chr3R_28100001 RAL-352 1111 chr3R 28103328 28103356 chr3R 28103415 28103448 6 84 3.0 1.5 2.2 1.9 120 chr3R 28103328 intergenic not near genes chr3R 28103388 intergenic not near genes chr3R 28103448 intergenic not near genes chr3R_6_28100001 chr3R_28100001 RAL-352 1112 chr3R 28118571 28118869 chr3R 28118703 28118944 8 124 5.5 5.0 5.2 1.3 373 chr3R 28118571 intergenic not near genes chr3R 28118758 intergenic not near genes chr3R 28118944 intergenic not near genes chr3R_8_28115001 chr3R_28115001 RAL-352 1113 chr3R 28118874 28118880 chr3R 28118954 28118961 5 80 3.0 8.5 5.8 0.7 87 chr3R 28118874 intergenic not near genes chr3R 28118918 intergenic not near genes chr3R 28118961 intergenic not near genes chr3R_5_28115001 chr3R_28115001 RAL-352 1114 chr3R 28130071 28130102 chr3R 28130185 28130216 5 114 3.0 3.5 3.2 1.2 145 chr3R 28130071 intergenic not near genes chr3R 28130144 intergenic not near genes chr3R 28130216 intergenic not near genes chr3R_5_28130001 chr3R_28130001 RAL-352 1115 chr3R 28223918 28223937 chr3R 28224374 28224393 5 456 0.5 3.0 1.8 1.8 475 chr3R 28223918 intron CG34354 + chr3R 28224156 intron CG34354 + chr3R 28224393 intron CG34354 + chr3R_5_28220001 chr3R_28220001 RAL-352 1116 chr3R 28233789 28233810 chr3R 28234020 28234045 4 234 1.5 3.5 2.5 1.1 256 chr3R 28233789 intron CG34354 + chr3R 28233917 intron CG34354 + chr3R 28234045 intron CG34354 + chr3R_4_28230001 chr3R_28230001 RAL-352 1117 chr3R 28282999 28283018 chr3R 28283616 28283647 6 626 1.5 4.0 2.8 1.6 648 chr3R 28282999 exon CG34436 + chr3R 28283323 exon CG34436 + chr3R 28283647 intergenic CG34437 +,CG34436 + chr3R_6_28280001 chr3R_28280001 RAL-352 1118 chr3R 28302110 28302133 chr3R 28302540 28302564 jockey 4 434 0.5 0.5 0.5 2.7 454 chr3R 28302110 intergenic not near genes chr3R 28302337 intergenic not near genes chr3R 28302564 intergenic not near genes chr3R_4_28300001 chr3R_28300001 RAL-352 1119 chr3R 28351985 28351991 chr3R 28352057 28352067 4 75 2.0 3.5 2.8 1.1 82 chr3R 28351985 intergenic Or98b + chr3R 28352026 intergenic Or98b + chr3R 28352067 intergenic Or98b + chr3R_4_28350001 chr3R_28350001 RAL-352 1120 chr3R 28393712 28393731 chr3R 28393812 28393830 4 100 1.0 2.0 1.5 1.6 118 chr3R 28393712 intergenic not near genes chr3R 28393771 intergenic not near genes chr3R 28393830 intergenic not near genes chr3R_4_28390001 chr3R_28390001 RAL-352 1121 chr3R 28444354 28444384 chr3R 28444491 28444519 10 130 1.0 2.5 1.8 3.6 165 chr3R 28444354 intron beat-VI + chr3R 28444436 intron beat-VI + chr3R 28444519 intron beat-VI + chr3R_10_28440001 chr3R_28440001 RAL-352 1122 chr3R 28745605 28745616 chr3R 28745678 28745697 4 76 1.5 1.0 1.2 1.8 92 chr3R 28745605 intergenic not near genes chr3R 28745651 intergenic not near genes chr3R 28745697 intergenic not near genes chr3R_4_28745001 chr3R_28745001 RAL-352 1123 chr3R 28792870 28792903 chr3R 28797962 28797995 jockey 12 5092 1.5 2.0 1.8 4.3 5125 chr3R 28792870 intergenic not near genes chr3R 28795432 intergenic not near genes chr3R 28797995 intergenic not near genes chr3R_12_28795001 chr3R_28795001 RAL-352 1124 chr3R 28827688 28827711 chr3R 28827840 28827866 9 155 2.0 4.5 3.2 2.1 178 chr3R 28827688 intron WASp - chr3R 28827777 intron WASp - chr3R 28827866 intron WASp - chr3R_9_28825001 chr3R_28825001 RAL-352 1125 chr3R 21907534 21907536 chr3R 28831799 28831802 83 6924266 25.0 19.5 22.2 3.6 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_83_25365001 chr3R_25365001 RAL-352 1126 chr3R 28845982 28846002 chr3R 28846072 28846088 6 85 7.5 4.0 5.8 0.9 106 chr3R 28845982 exon spg + chr3R 28846035 intron spg + chr3R 28846088 intron spg + chr3R_6_28845001 chr3R_28845001 RAL-352 1127 chr3R 29009964 29009983 chr3R 29010070 29010089 5 105 1.5 3.5 2.5 1.4 125 chr3R 29009964 intron wat - chr3R 29010026 intron wat - chr3R 29010089 intron wat - chr3R_5_29010001 chr3R_29010001 RAL-352 1128 chr3R 29067611 29067634 chr3R 29067757 29067782 6 146 3.5 0.0 1.8 2.1 171 chr3R 29067611 intron CG11873 + chr3R 29067696 intron CG11873 + chr3R 29067782 intron CG11873 + chr3R_6_29065001 chr3R_29065001 RAL-352 1129 chr3R 29079387 29079402 chr3R 29080759 29080774 NOF 5 1372 2.0 7.0 4.5 0.9 1387 chr3R 29079387 intron CG11873 + chr3R 29080080 intron CG11873 + chr3R 29080774 intron CG11873 + chr3R_5_29080001 chr3R_29080001 RAL-352 1130 chr3R 29213059 29213091 chr3R 29213142 29213164 7 79 4.0 3.5 3.8 1.5 105 chr3R 29213059 intergenic not near genes chr3R 29213112 intergenic not near genes chr3R 29213164 intergenic not near genes chr3R_7_29210001 chr3R_29210001 RAL-352 1131 chr3R 29237247 29237277 chr3R 29239266 29239279 8 2016 17.0 5.0 11.0 0.7 2032 chr3R 29237247 exon CG11951 - chr3R 29238263 intron CG11951 - chr3R 29239279 exon CG31427 - chr3R_8_29235001 chr3R_29235001 RAL-352 1132 chr3R 29239224 29239244 chr3R 29245514 29245533 8 6290 5.0 23.0 14.0 0.5 6309 chr3R 29239224 exon CG31427 - chr3R 29242378 exon CG31445 - chr3R 29245533 exon SP1029 - chr3R_8_29240001 chr3R_29240001 RAL-352 1133 chr3R 29329170 29329194 chr3R 29329513 29329537 7 343 0.5 2.5 1.5 2.8 367 chr3R 29329170 intergenic not near genes chr3R 29329354 intergenic not near genes chr3R 29329537 intergenic not near genes chr3R_7_29325001 chr3R_29325001 RAL-352 1134 chr3R 29340602 29340608 chr3R 29340667 29340685 4 70 7.0 3.5 5.2 0.6 83 chr3R 29340602 intergenic not near genes chr3R 29340644 intergenic not near genes chr3R 29340685 intergenic not near genes chr3R_4_29340001 chr3R_29340001 RAL-352 1135 chr3R 29384848 29384877 chr3R 29384971 29385001 5 123 1.5 7.0 4.2 1.0 153 chr3R 29384848 intron Ptp99A + chr3R 29384924 intron Ptp99A + chr3R 29385001 intron Ptp99A + chr3R_5_29380001 chr3R_29380001 RAL-352 1136 chr3R 29406617 29406650 chr3R 29407903 29407921 jockey 10 1277 4.5 3.0 3.8 2.1 1304 chr3R 29406617 intron Ptp99A + chr3R 29407269 intron Ptp99A + chr3R 29407921 intron Ptp99A + chr3R_10_29405001 chr3R_29405001 RAL-352 1137 chr3R 29472008 29472038 chr3R 29472101 29472131 7 91 2.5 3.0 2.8 1.8 123 chr3R 29472008 intron Ptp99A + chr3R 29472070 intron Ptp99A + chr3R 29472131 intron Ptp99A + chr3R_7_29470001 chr3R_29470001 RAL-352 1138 chr3R 29539437 29539457 chr3R 29539511 29539532 6 75 1.5 0.0 0.8 3.3 95 chr3R 29539437 intergenic not near genes chr3R 29539484 intergenic not near genes chr3R 29539532 intergenic not near genes chr3R_6_29535001 chr3R_29535001 RAL-352 1139 chr3R 29549035 29549067 chr3R 29549284 29549305 9 248 2.0 0.5 1.2 4.1 270 chr3R 29549035 intergenic not near genes chr3R 29549170 intergenic not near genes chr3R 29549305 intergenic not near genes chr3R_9_29545001 chr3R_29545001 RAL-352 1140 chr3R 29550265 29550272 chr3R 29550345 29550350 4 79 5.0 5.5 5.2 0.6 85 chr3R 29550265 intergenic not near genes chr3R 29550308 intergenic not near genes chr3R 29550350 intergenic not near genes chr3R_4_29550001 chr3R_29550001 RAL-352 1141 chr3R 29590374 29590400 chr3R 29590467 29590493 15 92 3.0 2.0 2.5 4.3 119 chr3R 29590374 intron CG31041 - chr3R 29590434 intron CG31041 - chr3R 29590493 intron CG31041 - chr3R_15_29590001 chr3R_29590001 RAL-352 1142 chr3R 29627592 29627596 chr3R 29627655 29627671 4 69 3.5 4.5 4.0 0.8 79 chr3R 29627592 intergenic not near genes chr3R 29627632 intergenic not near genes chr3R 29627671 intergenic not near genes chr3R_4_29625001 chr3R_29625001 RAL-352 1143 chr3R 29719403 29719425 chr3R 29719489 29719509 4 84 4.0 1.5 2.8 1.1 106 chr3R 29719403 intron CG15506 + chr3R 29719456 intron CG15506 + chr3R 29719509 intron CG15506 + chr3R_4_29715001 chr3R_29715001 RAL-352 1144 chr3R 29738263 29738298 chr3R 29739730 29739763 hobo 11 1465 1.0 3.5 2.2 3.4 1500 chr3R 29738263 intergenic CG1969 +,CG7598 + chr3R 29739013 intron CG1969 + chr3R 29739763 5` UTR CG1969 + chr3R_11_29735001 chr3R_29735001 RAL-352 1145 chr3R 29769694 29769715 chr3R 29769762 29769791 6 74 2.5 2.0 2.2 1.9 97 chr3R 29769694 intron kay + chr3R 29769742 intron kay + chr3R 29769791 intron kay + chr3R_6_29765001 chr3R_29765001 RAL-352 1146 chr3R 29880582 29880602 chr3R 29880667 29880668 4 75 2.0 3.0 2.5 1.1 86 chr3R 29880582 intron CG31038 + chr3R 29880625 intron CG31038 + chr3R 29880668 intron CG31038 + chr3R_4_29880001 chr3R_29880001 RAL-352 1147 chr3R 29880603 29880616 chr3R 29880666 29880701 5 70 2.0 3.0 2.5 1.4 98 chr3R 29880603 intron CG31038 + chr3R 29880652 intron CG31038 + chr3R 29880701 intron CG31038 + chr3R_5_29880001 chr3R_29880001 RAL-352 1148 chr3R 29923607 29923628 chr3R 29925464 29925476 7 1852 7.0 25.0 16.0 0.4 1869 chr3R 29923607 intergenic Jon99Cii -,Jon99Ciii + chr3R 29924542 exon Jon99Cii - chr3R 29925476 exon Jon99Ci - chr3R_7_29920001 chr3R_29920001 RAL-352 1149 chr3R 29950576 29950597 chr3R 29950651 29950656 7 66 4.0 1.5 2.8 1.8 80 chr3R 29950576 intergenic TkR99D - chr3R 29950616 intergenic TkR99D - chr3R 29950656 intergenic TkR99D - chr3R_7_29950001 chr3R_29950001 RAL-352 1150 chr3R 29963486 29963509 chr3R 29963583 29963610 5 98 0.0 3.5 1.8 1.8 124 chr3R 29963486 intron TkR99D - chr3R 29963548 intron TkR99D - chr3R 29963610 intron TkR99D - chr3R_5_29960001 chr3R_29960001 RAL-352 1151 chr3R 30013687 30013693 chr3R 30013770 30013776 4 83 2.5 1.5 2.0 1.3 89 chr3R 30013687 intron CG7920 - chr3R 30013732 intron CG7920 - chr3R 30013776 intron CG7920 - chr3R_4_30010001 chr3R_30010001 RAL-352 1152 chr3R 30074512 30074533 chr3R 30075017 30075039 9 506 3.5 4.0 3.8 1.9 527 chr3R 30074512 intron sima + chr3R 30074776 intron sima + chr3R 30075039 intron sima + chr3R_9_30070001 chr3R_30070001 RAL-352 1153 chr3R 30084854 30084880 chr3R 30086321 30086347 hobo 9 1465 0.5 4.0 2.2 2.8 1493 chr3R 30084854 intron sima + chr3R 30085600 intron sima + chr3R 30086347 intron sima + chr3R_9_30085001 chr3R_30085001 RAL-352 1154 chr3R 30136955 30136982 chr3R 30137030 30137051 9 76 1.5 3.0 2.2 2.8 96 chr3R 30136955 exon AdoR - chr3R 30137003 intron AdoR - chr3R 30137051 intron AdoR - chr3R_9_30135001 chr3R_30135001 RAL-352 1155 chr3R 30182759 30182788 chr3R 30182894 30182927 10 138 3.0 2.0 2.5 2.9 168 chr3R 30182759 intergenic not near genes chr3R 30182843 intergenic not near genes chr3R 30182927 intergenic not near genes chr3R_10_30180001 chr3R_30180001 RAL-352 1156 chr3R 30262577 30262600 chr3R 30262674 30262689 9 94 4.0 1.5 2.8 2.4 112 chr3R 30262577 intergenic not near genes chr3R 30262633 intergenic not near genes chr3R 30262689 intergenic not near genes chr3R_9_30260001 chr3R_30260001 RAL-352 1157 chr3R 30317326 30317350 chr3R 30324916 30324937 roo 6 7591 3.0 2.5 2.8 1.6 7611 chr3R 30317326 intron hdc + chr3R 30321132 intron hdc + chr3R 30324937 intron hdc + chr3R_6_30320001 chr3R_30320001 RAL-352 1158 chr3R 30330512 30330524 chr3R 30330569 30330604 4 69 3.0 3.0 3.0 1.0 92 chr3R 30330512 intron hdc + chr3R 30330558 intron hdc + chr3R 30330604 intron hdc + chr3R_4_30330001 chr3R_30330001 RAL-352 1159 chr3R 30364843 30364866 chr3R 30365016 30365039 7 170 0.0 3.5 1.8 2.5 196 chr3R 30364843 3` UTR hdc + chr3R 30364941 3` UTR hdc + chr3R 30365039 3` UTR hdc + chr3R_7_30360001 chr3R_30360001 RAL-352 1160 chr3R 30396222 30396241 chr3R 30404488 30404506 roo 4 8266 2.0 2.5 2.2 1.2 8284 chr3R 30396222 intergenic not near genes chr3R 30400364 intergenic not near genes chr3R 30404506 5` UTR CR45570 + chr3R_4_30400001 chr3R_30400001 RAL-352 1161 chr3R 23457302 23457327 chr3R 30410931 30410941 5 6953623 28.0 11.5 19.8 0.2 6953639 chr3R 23457302 intron CG4374 - chr3R 26934122 intron sda + chr3R 30410941 intergenic not near genes chr3R_5_26930001 chr3R_26930001 RAL-352 1162 chr3R 30440693 30440716 chr3R 30440952 30440973 13 258 6.5 6.0 6.2 1.8 280 chr3R 30440693 intron CG15537 - chr3R 30440833 intron CG15537 - chr3R 30440973 intron CG15537 - chr3R_13_30440001 chr3R_30440001 RAL-352 1163 chr3R 30458026 30458043 chr3R 30458104 30458123 5 78 2.5 3.0 2.8 1.3 97 chr3R 30458026 intron CG2224 - chr3R 30458074 intron CG2224 - chr3R 30458123 intron CG2224 - chr3R_5_30455001 chr3R_30455001 RAL-352 1164 chr3R 30471924 30471934 chr3R 30471977 30472010 5 68 0.5 4.5 2.5 1.4 86 chr3R 30471924 intron PH4alphaEFB + chr3R 30471967 intron PH4alphaEFB + chr3R 30472010 intron PH4alphaEFB + chr3R_5_30470001 chr3R_30470001 RAL-352 1165 chr3R 30480475 30480479 chr3R 30482943 30482944 jockey 4 2467 12.5 2.5 7.5 0.5 2469 chr3R 30480475 intron PH4alphaEFB + chr3R 30481710 intron PH4alphaEFB + chr3R 30482944 intron PH4alphaEFB + chr3R_4_30480001 chr3R_30480001 RAL-352 1166 chr3R 30480486 30480513 chr3R 30482940 30482981 jockey 13 2466 3.5 2.5 3.0 3.2 2495 chr3R 30480486 intron PH4alphaEFB + chr3R 30481734 intron PH4alphaEFB + chr3R 30482981 intron PH4alphaEFB + chr3R_13_30480001 chr3R_30480001 RAL-352 1167 chr3R 30495171 30495190 chr3R 30495291 30495308 5 118 2.0 5.0 3.5 1.1 137 chr3R 30495171 intron PH4alphaMP - chr3R 30495240 intron PH4alphaMP - chr3R 30495308 intron PH4alphaMP - chr3R_5_30495001 chr3R_30495001 RAL-352 1168 chr3R 30498418 30498434 chr3R 30498607 30498634 4 194 0.0 2.5 1.2 1.8 216 chr3R 30498418 intron PH4alphaNE1 - chr3R 30498526 intron PH4alphaNE1 - chr3R 30498634 intron PH4alphaNE1 - chr3R_4_30495001 chr3R_30495001 RAL-352 1169 chr3R 30544662 30544672 chr3R 30544739 30544747 4 76 1.5 3.5 2.5 1.1 85 chr3R 30544662 intron tmod + chr3R 30544704 intron tmod + chr3R 30544747 intron tmod + chr3R_4_30540001 chr3R_30540001 RAL-352 1170 chr3R 30551277 30551301 chr3R 30551361 30551385 5 84 2.5 3.0 2.8 1.3 108 chr3R 30551277 intron tmod + chr3R 30551331 intron tmod + chr3R 30551385 intron tmod + chr3R_5_30550001 chr3R_30550001 RAL-352 1171 chr3R 30592510 30592538 chr3R 30592613 30592648 10 107 2.5 4.0 3.2 2.4 138 chr3R 30592510 intergenic CG2246 - chr3R 30592579 intergenic CG2246 - chr3R 30592648 intergenic CG2246 - chr3R_10_30590001 chr3R_30590001 RAL-352 1172 chr3R 30627616 30627639 chr3R 30627681 30627694 10 71 4.5 6.0 5.2 1.6 78 chr3R 30627616 exon CG2267 - chr3R 30627655 exon CG2267 - chr3R 30627694 exon CG2267 - chr3R_10_30625001 chr3R_30625001 RAL-352 1173 chr3R 30690161 30690186 chr3R 30690245 30690248 11 81 5.5 3.5 4.5 2.0 87 chr3R 30690161 intergenic Spn100A + chr3R 30690204 intergenic Spn100A + chr3R 30690248 intergenic Spn100A + chr3R_11_30690001 chr3R_30690001 RAL-352 1174 chr3R 30700865 30700879 chr3R 30700988 30701002 5 122 0.5 0.5 0.5 3.3 137 chr3R 30700865 intergenic not near genes chr3R 30700934 intergenic not near genes chr3R 30701002 intergenic not near genes chr3R_5_30700001 chr3R_30700001 RAL-352 1175 chr3R 31042113 31042142 chr3R 31042199 31042229 10 84 1.5 2.5 2.0 3.3 116 chr3R 31042113 intron CanA1 + chr3R 31042171 intron CanA1 + chr3R 31042229 intron CanA1 + chr3R_10_31040001 chr3R_31040001 RAL-352 1176 chr3R 31067023 31067056 chr3R 31067150 31067180 10 122 1.0 4.0 2.5 2.9 157 chr3R 31067023 intron Sox100B + chr3R 31067102 intron Sox100B + chr3R 31067180 intron Sox100B + chr3R_10_31065001 chr3R_31065001 RAL-352 1177 chr3R 31146751 31146783 chr3R 31146829 31146846 9 75 2.0 1.0 1.5 3.6 95 chr3R 31146751 intron Gycbeta100B + chr3R 31146798 intron Gycbeta100B + chr3R 31146846 intron Gycbeta100B + chr3R_9_31145001 chr3R_31145001 RAL-352 1178 chr3R 31274367 31274394 chr3R 31274445 31274472 8 77 2.0 3.5 2.8 2.1 105 chr3R 31274367 intergenic not near genes chr3R 31274420 intergenic not near genes chr3R 31274472 intergenic not near genes chr3R_8_31270001 chr3R_31270001 RAL-352 1179 chr3R 31279377 31279406 chr3R 31285567 31285588 diver 6 6188 3.0 4.5 3.8 1.2 6211 chr3R 31279377 intergenic not near genes chr3R 31282482 intergenic not near genes chr3R 31285588 intergenic not near genes chr3R_6_31280001 chr3R_31280001 RAL-352 1180 chr3R 31348057 31348092 chr3R 31348134 31348165 5 76 1.5 5.5 3.5 1.1 108 chr3R 31348057 intron CG34347 + chr3R 31348111 intron CG34347 + chr3R 31348165 intron CG34347 + chr3R_5_31345001 chr3R_31345001 RAL-352 1181 chr3R 31413095 31413122 chr3R 31418291 31418322 copia 13 5198 2.0 1.0 1.5 5.2 5227 chr3R 31413095 intron Gprk2 + chr3R 31415708 intron Gprk2 + chr3R 31418322 intron Gprk2 + chr3R_13_31415001 chr3R_31415001 RAL-352 1182 chr3R 31426884 31426911 chr3R 31426976 31427003 6 91 1.5 5.0 3.2 1.4 119 chr3R 31426884 intron Gprk2 + chr3R 31426944 intron Gprk2 + chr3R 31427003 intron Gprk2 + chr3R_6_31425001 chr3R_31425001 RAL-352 1183 chr3R 31435362 31435391 chr3R 31435514 31435543 7 150 1.0 2.5 1.8 2.5 181 chr3R 31435362 intron Gprk2 + chr3R 31435452 intron Gprk2 + chr3R 31435543 intron Gprk2 + chr3R_7_31435001 chr3R_31435001 RAL-352 1184 chr3R 31606147 31606171 chr3R 31606309 31606329 5 160 3.5 2.5 3.0 1.2 182 chr3R 31606147 intron CycG - chr3R 31606238 intron CycG - chr3R 31606329 intron CycG - chr3R_5_31605001 chr3R_31605001 RAL-352 1185 chr3R 31630060 31630084 chr3R 31630165 31630189 7 103 1.5 4.5 3.0 1.8 129 chr3R 31630060 intron kek6 + chr3R 31630124 intron kek6 + chr3R 31630189 intron kek6 + chr3R_7_31630001 chr3R_31630001 RAL-352 1186 chr3R 31691531 31691561 chr3R 31696297 31696311 Doc 12 4762 4.0 7.5 5.8 1.8 4780 chr3R 31691531 intergenic not near genes chr3R 31693921 intergenic not near genes chr3R 31696311 intergenic not near genes chr3R_12_31690001 chr3R_31690001 RAL-352 1187 chr3R 31880301 31880329 chr3R 31880376 31880405 5 70 1.5 4.0 2.8 1.3 104 chr3R 31880301 intron heph - chr3R 31880353 intron heph - chr3R 31880405 intron heph - chr3R_5_31880001 chr3R_31880001 RAL-352 1188 chr3R 31911676 31911804 chr3R 31911762 31911875 10 83 2.0 1.0 1.5 4.0 199 chr3R 31911676 intron heph - chr3R 31911776 intron heph - chr3R 31911875 intron heph - chr3R_10_31910001 chr3R_31910001 RAL-352 1189 chr3R 31953146 31953178 chr3R 31953220 31953242 7 74 3.5 3.5 3.5 1.6 96 chr3R 31953146 intron heph - chr3R 31953194 intron heph - chr3R 31953242 intron heph - chr3R_7_31950001 chr3R_31950001 RAL-352 1190 chr3R 31997994 31998023 chr3R 32005463 32005493 blood 6 7469 4.0 1.0 2.5 1.7 7499 chr3R 31997994 intron heph - chr3R 32001744 intron heph - chr3R 32005493 intron heph - chr3R_6_32000001 chr3R_32000001 RAL-352 1191 chr3R 32013272 32013308 chr3R 32013390 32013425 8 118 1.0 0.5 0.8 4.4 153 chr3R 32013272 intron,5` UTR heph -,CR45556 + chr3R 32013348 intron,5` UTR heph -,CR45556 + chr3R 32013425 intron heph - chr3R_8_32010001 chr3R_32010001 RAL-352 1192 chr4 671603 671634 chr4 680186 680204 Tirant 11 8579 3.5 7.0 5.2 1.8 8601 chr4 671603 intron CG11360 + chr4 675904 intron CG11360 + chr4 680204 intron CG11360 + chr4_11_675001 chr4_675001 RAL-352 1193 chrX 264187 264214 chrX 264269 264303 15 85 5.0 3.0 4.0 3.0 116 chrX 264187 intron CR43906 + chrX 264245 intron CR43906 + chrX 264303 intron CR43906 + chrX_15_260001 chrX_260001 RAL-352 1194 chrX 424142 424158 chrX 424399 424430 7 267 2.5 0.5 1.5 2.8 288 chrX 424142 intron CG32816 - chrX 424286 intron CG32816 - chrX 424430 intron CG32816 - chrX_7_420001 chrX_420001 RAL-352 1195 chrX 547631 547665 chrX 547875 547908 7 239 2.5 0.5 1.5 2.8 277 chrX 547631 intron Appl + chrX 547770 intron Appl + chrX 547908 intron Appl + chrX_7_545001 chrX_545001 RAL-352 1196 chrX 617986 618005 chrX 618058 618084 8 73 2.0 3.5 2.8 2.1 98 chrX 617986 intron CG13366 - chrX 618035 intron CG13366 - chrX 618084 intron CG13366 - chrX_8_615001 chrX_615001 RAL-352 1197 chrX 667668 667680 chrX 667752 667757 4 82 0.0 4.0 2.0 1.3 89 chrX 667668 intergenic not near genes chrX 667712 intergenic not near genes chrX 667757 intergenic not near genes chrX_4_665001 chrX_665001 RAL-352 1198 chrX 670266 670297 chrX 670346 670377 11 78 0.0 1.5 0.8 6.1 111 chrX 670266 intergenic not near genes chrX 670322 intergenic not near genes chrX 670377 intergenic not near genes chrX_11_670001 chrX_670001 RAL-352 1199 chrX 680837 680866 chrX 680920 680938 6 81 1.5 4.5 3.0 1.5 101 chrX 680837 intergenic not near genes chrX 680888 intergenic not near genes chrX 680938 intergenic not near genes chrX_6_680001 chrX_680001 RAL-352 1200 chrX 706804 706829 chrX 707161 707192 7 362 0.0 3.5 1.8 2.5 388 chrX 706804 intron sdk + chrX 706998 intron sdk + chrX 707192 intron sdk + chrX_7_705001 chrX_705001 RAL-352 1201 chrX 778138 778154 chrX 778221 778239 6 83 5.5 1.0 3.2 1.4 101 chrX 778138 intron fz3 + chrX 778188 intron fz3 + chrX 778239 intron fz3 + chrX_6_775001 chrX_775001 RAL-352 1202 chrX 802298 802318 chrX 802370 802392 5 73 4.0 3.0 3.5 1.1 94 chrX 802298 exon CG13359 - chrX 802345 exon CG13359 - chrX 802392 exon CG13359 - chrX_5_800001 chrX_800001 RAL-352 1203 chrX 806783 806818 chrX 806878 806912 9 90 2.0 2.0 2.0 3.0 129 chrX 806783 intron Sec22 + chrX 806848 intron Sec22 + chrX 806912 intron Sec22 + chrX_9_805001 chrX_805001 RAL-352 1204 chrX 827609 827630 chrX 835392 835422 roo 7 7791 3.0 3.0 3.0 1.8 7813 chrX 827609 intron CG43867 - chrX 831516 intron CG43867 - chrX 835422 intron CG43867 - chrX_7_830001 chrX_830001 RAL-352 1205 chrX 911181 911194 chrX 911244 911273 5 73 2.0 3.0 2.5 1.4 92 chrX 911181 intron CG43867 - chrX 911227 intron CG43867 - chrX 911273 intron CG43867 - chrX_5_910001 chrX_910001 RAL-352 1206 chrX 1051080 1051091 chrX 1051144 1051169 7 73 3.5 4.0 3.8 1.5 89 chrX 1051080 intron CR44779 + chrX 1051124 intron CR44779 + chrX 1051169 intron CR44779 + chrX_7_1050001 chrX_1050001 RAL-352 1207 chrX 1053117 1053120 chrX 16983076 16983077 7 15929958 15.5 11.0 13.2 0.5 15929960 chrX 1053117 intron CR44779 + chrX 9018097 intron,intron rdgA +,CR43836 - chrX 16983077 intron CG45002 - chrX_7_9015001 chrX_9015001 RAL-352 1208 chrX 1163314 1163328 chrX 1163375 1163406 7 74 3.0 2.5 2.8 1.8 92 chrX 1163314 intergenic CG34320 - chrX 1163360 intergenic CG34320 - chrX 1163406 intergenic CG34320 - chrX_7_1160001 chrX_1160001 RAL-352 1209 chrX 1185565 1185581 chrX 1185644 1185659 6 78 2.0 3.0 2.5 1.7 94 chrX 1185565 intron CG14626 + chrX 1185612 intron CG14626 + chrX 1185659 intron CG14626 + chrX_6_1185001 chrX_1185001 RAL-352 1210 chrX 1338402 1338423 chrX 1338733 1338755 5 332 4.0 5.0 4.5 0.9 353 chrX 1338402 intron CG11409 - chrX 1338578 intron CG11409 - chrX 1338755 intron CG11409 - chrX_5_1335001 chrX_1335001 RAL-352 1211 chrX 1518060 1518074 chrX 1523437 1523476 jockey 6 5392 2.5 2.5 2.5 1.7 5416 chrX 1518060 intergenic inc + chrX 1520768 intergenic not near genes chrX 1523476 intergenic not near genes chrX_6_1520001 chrX_1520001 RAL-352 1212 chrX 1627984 1628004 chrX 1635449 1635468 gtwin 8 7465 3.0 5.0 4.0 1.6 7484 chrX 1627984 intron,intron Mur2B -,br + chrX 1631726 intron,intron Mur2B -,br + chrX 1635468 intron,intron Mur2B -,br + chrX_8_1630001 chrX_1630001 RAL-352 1213 chrX 1954887 1954906 chrX 1962824 1962836 Stalker2 4 7935 1.0 2.5 1.8 1.4 7949 chrX 1954887 intron Hr4 + chrX 1958862 intron Hr4 + chrX 1962836 intron Hr4 + chrX_4_1955001 chrX_1955001 RAL-352 1214 chrX 2385734 2385753 chrX 2385812 2385826 5 76 0.5 1.0 0.8 2.8 92 chrX 2385734 intron PsGEF - chrX 2385780 intron PsGEF - chrX 2385826 intron PsGEF - chrX_5_2385001 chrX_2385001 RAL-352 1215 chrX 2399837 2399865 chrX 2408190 2408204 roo 4 8348 6.0 0.0 3.0 1.0 8367 chrX 2399837 intergenic not near genes chrX 2404020 intergenic not near genes chrX 2408204 intergenic not near genes chrX_4_2400001 chrX_2400001 RAL-352 1216 chrX 2506953 2506963 chrX 2507047 2507057 4 94 1.5 6.5 4.0 0.8 104 chrX 2506953 intron trol - chrX 2507005 intron trol - chrX 2507057 intron trol - chrX_4_2505001 chrX_2505001 RAL-352 1217 chrX 2578813 2578844 chrX 2578902 2578936 10 89 2.5 3.5 3.0 2.5 123 chrX 2578813 intergenic Pdfr +,Vha36-3 - chrX 2578874 intergenic Vha36-3 -,Pdfr + chrX 2578936 intergenic Vha36-3 -,Pdfr + chrX_10_2575001 chrX_2575001 RAL-352 1218 chrX 2820549 2820582 chrX 2820620 2820644 10 71 1.5 2.0 1.8 3.6 95 chrX 2820549 intron kirre + chrX 2820596 intron kirre + chrX 2820644 intron kirre + chrX_10_2820001 chrX_2820001 RAL-352 1219 chrX 2888122 2888147 chrX 2888193 2888223 6 71 3.0 1.5 2.2 1.9 101 chrX 2888122 intron kirre + chrX 2888172 intron kirre + chrX 2888223 intron kirre + chrX_6_2885001 chrX_2885001 RAL-352 1220 chrX 3107750 3107785 chrX 3107839 3107869 6 83 1.5 2.0 1.8 2.1 119 chrX 3107750 intron kirre + chrX 3107810 intron kirre + chrX 3107869 intron kirre + chrX_6_3105001 chrX_3105001 RAL-352 1221 chrX 3271700 3271715 chrX 3271766 3271792 4 74 4.5 2.5 3.5 0.9 92 chrX 3271700 intron dnc + chrX 3271746 intron dnc + chrX 3271792 intron dnc + chrX_4_3270001 chrX_3270001 RAL-352 1222 chrX 3415029 3415046 chrX 3421210 3421220 3S18 8 6181 0.0 1.0 0.5 5.3 6191 chrX 3415029 intron,intron CR44999 +,CG12535 - chrX 3418124 intron,intron CR44999 +,CG12535 - chrX 3421220 intron,intron CR44999 +,CG12535 - chrX_8_3415001 chrX_3415001 RAL-352 1223 chrX 3493092 3493123 chrX 3502250 3502263 roo 6 9152 3.0 1.5 2.2 1.9 9171 chrX 3493092 intron,intron CR44999 +,Gas8 - chrX 3497678 intron,intron CR44999 +,Gas8 - chrX 3502263 intron,intron CR44999 +,Gas8 - chrX_6_3495001 chrX_3495001 RAL-352 1224 chrX 3597559 3597575 chrX 3619727 3619743 roo 5 22167 3.0 5.5 4.2 1.0 22184 chrX 3597559 intron AstA-R1 + chrX 3608651 intron AstA-R1 + chrX 3619743 intron AstA-R1 + chrX_5_3605001 chrX_3605001 RAL-352 1225 chrX 3620474 3620494 chrX 3620572 3620590 9 98 0.5 3.5 2.0 3.0 116 chrX 3620474 intron AstA-R1 + chrX 3620532 intron AstA-R1 + chrX 3620590 intron AstA-R1 + chrX_9_3620001 chrX_3620001 RAL-352 1226 chrX 3657412 3657446 chrX 3657492 3657526 7 79 1.5 2.5 2.0 2.3 114 chrX 3657412 intron AstA-R1 + chrX 3657469 intron AstA-R1 + chrX 3657526 intron AstA-R1 + chrX_7_3655001 chrX_3655001 RAL-352 1227 chrX 3798046 3798075 chrX 3798133 3798164 6 89 3.0 4.5 3.8 1.2 118 chrX 3798046 intergenic not near genes chrX 3798105 intergenic not near genes chrX 3798164 intergenic not near genes chrX_6_3795001 chrX_3795001 RAL-352 1228 chrX 3881269 3881304 chrX 3881408 3881443 4 139 1.5 3.5 2.5 1.1 174 chrX 3881269 intron VhaAC39-1 + chrX 3881356 intron VhaAC39-1 + chrX 3881443 intron VhaAC39-1 + chrX_4_3880001 chrX_3880001 RAL-352 1229 chrX 3922140 3922160 chrX 3922401 3922428 6 270 0.0 4.5 2.2 1.9 288 chrX 3922140 intron CG42541 - chrX 3922284 intron CG42541 - chrX 3922428 intron CG42541 - chrX_6_3920001 chrX_3920001 RAL-352 1230 chrX 3986862 3986894 chrX 3994494 3994527 412 4 7632 2.5 2.0 2.2 1.2 7665 chrX 3986862 intergenic not near genes chrX 3990694 intergenic not near genes chrX 3994527 intergenic not near genes chrX_4_3990001 chrX_3990001 RAL-352 1231 chrX 4157890 4157923 chrX 4164925 4164953 297 8 7033 0.5 1.5 1.0 4.0 7063 chrX 4157890 intron Fas2 - chrX 4161422 intron Fas2 - chrX 4164953 intron Fas2 - chrX_8_4160001 chrX_4160001 RAL-352 1232 chrX 4206227 4206238 chrX 4206341 4206352 5 114 0.5 3.0 1.8 1.8 125 chrX 4206227 intergenic Fas2 - chrX 4206290 intergenic Fas2 - chrX 4206352 intergenic Fas2 - chrX_5_4205001 chrX_4205001 RAL-352 1233 chrX 4252963 4252981 chrX 4253043 4253066 8 85 2.5 2.5 2.5 2.3 103 chrX 4252963 intergenic CG15576 - chrX 4253014 intergenic CG15576 - chrX 4253066 intergenic CG15576 - chrX_8_4250001 chrX_4250001 RAL-352 1234 chrX 4310902 4310927 chrX 4311081 4311111 12 180 3.5 4.0 3.8 2.5 209 chrX 4310902 intergenic CG15579 - chrX 4311006 intergenic CG15579 - chrX 4311111 intergenic CG15579 - chrX_12_4310001 chrX_4310001 RAL-352 1235 chrX 4613548 4613567 chrX 4613635 4613646 10 88 5.0 6.0 5.5 1.5 98 chrX 4613548 intergenic not near genes chrX 4613597 intergenic not near genes chrX 4613646 intergenic not near genes chrX_10_4610001 chrX_4610001 RAL-352 1236 chrX 4717361 4717366 chrX 4717879 4717885 4 518 6.5 2.5 4.5 0.7 524 chrX 4717361 intron Proc-R + chrX 4717623 intron Proc-R + chrX 4717885 intron Proc-R + chrX_4_4715001 chrX_4715001 RAL-352 1237 chrX 4717370 4717383 chrX 4717875 4717904 5 511 3.0 1.5 2.2 1.6 534 chrX 4717370 intron Proc-R + chrX 4717637 intron Proc-R + chrX 4717904 intron Proc-R + chrX_5_4715001 chrX_4715001 RAL-352 1238 chrX 4731817 4731842 chrX 4736907 4736918 jockey 5 5088 6.0 3.5 4.8 0.9 5101 chrX 4731817 intergenic not near genes chrX 4734368 intergenic not near genes chrX 4736918 intergenic not near genes chrX_5_4730001 chrX_4730001 RAL-352 1239 chrX 4755428 4755434 chrX 4755485 4755489 5 65 0.0 2.0 1.0 2.5 61 chrX 4755428 intergenic not near genes chrX 4755458 intergenic not near genes chrX 4755489 intergenic not near genes chrX_5_4755001 chrX_4755001 RAL-352 1240 chrX 4756231 4756239 chrX 12076672 12076678 4 7320441 2.0 7.0 4.5 0.7 7320447 chrX 4756231 intergenic not near genes chrX 8416454 intron Trf2 + chrX 12076678 intron,intron CR43960 +,Ten-a + chrX_4_8415001 chrX_8415001 RAL-352 1241 chrX 4763258 4763284 chrX 4763742 4763772 Stalker4 6 482 2.0 1.5 1.8 2.1 514 chrX 4763258 intergenic not near genes chrX 4763515 intergenic not near genes chrX 4763772 intergenic not near genes chrX_6_4760001 chrX_4760001 RAL-352 1242 chrX 4792384 4792407 chrX 4792817 4792840 jockey 5 433 2.0 8.0 5.0 0.8 456 chrX 4792384 intergenic not near genes chrX 4792612 intergenic not near genes chrX 4792840 intergenic not near genes chrX_5_4790001 chrX_4790001 RAL-352 1243 chrX 4871207 4871230 chrX 4871307 4871319 6 97 1.5 3.0 2.2 1.9 112 chrX 4871207 intron CG42594 + chrX 4871263 intron CG42594 + chrX 4871319 intron CG42594 + chrX_6_4870001 chrX_4870001 RAL-352 1244 chrX 4899612 4899636 chrX 4899688 4899709 5 75 1.5 0.0 0.8 2.8 97 chrX 4899612 intron CG42594 + chrX 4899660 intron CG42594 + chrX 4899709 intron CG42594 + chrX_5_4895001 chrX_4895001 RAL-352 1245 chrX 5206303 5206333 chrX 5206573 5206605 6 271 2.0 2.5 2.2 1.9 302 chrX 5206303 intron,intron CG15465 +,rg + chrX 5206454 intron,intron CG15465 +,rg + chrX 5206605 intron,intron CG15465 +,rg + chrX_6_5205001 chrX_5205001 RAL-352 1246 chrX 5338708 5338738 chrX 5339958 5339970 jockey 5 1247 0.5 3.0 1.8 1.8 1262 chrX 5338708 intergenic not near genes chrX 5339339 intergenic not near genes chrX 5339970 intergenic SK + chrX_5_5335001 chrX_5335001 RAL-352 1247 chrX 5555374 5555392 chrX 5555495 5555504 8 117 5.5 3.0 4.2 1.5 130 chrX 5555374 intron Vsx2 - chrX 5555439 intron Vsx2 - chrX 5555504 intron Vsx2 - chrX_8_5555001 chrX_5555001 RAL-352 1248 chrX 5884171 5884185 chrX 5884412 5884417 pogo 4 238 1.5 1.5 1.5 1.6 246 chrX 5884171 intron CR45668 - chrX 5884294 intron CR45668 - chrX 5884417 intron CR45668 - chrX_4_5880001 chrX_5880001 RAL-352 1249 chrX 6171585 6171610 chrX 6179018 6179043 Quasimodo 4 7432 3.0 1.0 2.0 1.3 7458 chrX 6171585 intron Ca-alpha1T - chrX 6175314 intron Ca-alpha1T - chrX 6179043 intron Ca-alpha1T - chrX_4_6175001 chrX_6175001 RAL-352 1250 chrX 6215340 6215370 chrX 6215423 6215453 4 82 0.0 1.5 0.8 2.2 113 chrX 6215340 intergenic not near genes chrX 6215396 intergenic not near genes chrX 6215453 intergenic not near genes chrX_4_6215001 chrX_6215001 RAL-352 1251 chrX 6315158 6315190 chrX 6315288 6315320 7 129 2.5 1.5 2.0 2.3 162 chrX 6315158 intron CG15894 + chrX 6315239 intron CG15894 + chrX 6315320 intron CG15894 + chrX_7_6315001 chrX_6315001 RAL-352 1252 chrX 6335221 6335231 chrX 6337731 6337741 Tirant 4 2510 0.0 4.0 2.0 1.3 2520 chrX 6335221 intergenic not near genes chrX 6336481 intergenic not near genes chrX 6337741 intergenic CG3842 + chrX_4_6335001 chrX_6335001 RAL-352 1253 chrX 6392885 6392900 chrX 6397643 6397665 Doc 7 4763 3.0 2.0 2.5 2.0 4780 chrX 6392885 intergenic not near genes chrX 6395275 intergenic not near genes chrX 6397665 intergenic not near genes chrX_7_6395001 chrX_6395001 RAL-352 1254 chrX 6562830 6562845 chrX 6571306 6571324 Tirant 6 8478 3.0 3.5 3.2 1.4 8494 chrX 6562830 intron CG34417 + chrX 6567077 intron CG34417 + chrX 6571324 intron CG34417 + chrX_6_6565001 chrX_6565001 RAL-352 1255 chrX 6581572 6581583 chrX 6581626 6581663 5 72 1.5 3.0 2.2 1.6 91 chrX 6581572 intron CG34417 + chrX 6581618 intron CG34417 + chrX 6581663 intron CG34417 + chrX_5_6580001 chrX_6580001 RAL-352 1256 chrX 6897584 6897703 chrX 6897662 6897806 5 95 0.5 0.5 0.5 3.3 222 chrX 6897584 intergenic not near genes chrX 6897695 intergenic not near genes chrX 6897806 intergenic not near genes chrX_5_6895001 chrX_6895001 RAL-352 1257 chrX 7023607 7023633 chrX 7030997 7031018 Tabor 5 7388 1.5 4.0 2.8 1.3 7411 chrX 7023607 intron CG12541 - chrX 7027312 intron CG12541 - chrX 7031018 intron CG12541 - chrX_5_7025001 chrX_7025001 RAL-352 1258 chrX 7125247 7125278 chrX 7134406 7134437 roo 5 9159 0.5 3.0 1.8 1.8 9190 chrX 7125247 intergenic not near genes chrX 7129842 intergenic not near genes chrX 7134437 intergenic not near genes chrX_5_7125001 chrX_7125001 RAL-352 1259 chrX 7268370 7268400 chrX 7268445 7268478 7 74 2.5 1.0 1.8 2.5 108 chrX 7268370 intron CR44357 - chrX 7268424 intron CR44357 - chrX 7268478 intron CR44357 - chrX_7_7265001 chrX_7265001 RAL-352 1260 chrX 7702509 7702518 chrX 7702601 7702608 6 90 0.0 4.5 2.2 1.9 99 chrX 7702509 intron CHES-1-like - chrX 7702558 intron CHES-1-like - chrX 7702608 intron CHES-1-like - chrX_6_7700001 chrX_7700001 RAL-352 1261 chrX 7702904 7702929 chrX 7703343 7703364 jockey 4 438 3.0 3.0 3.0 1.0 460 chrX 7702904 intron CHES-1-like - chrX 7703134 intron CHES-1-like - chrX 7703364 intron CHES-1-like - chrX_4_7700001 chrX_7700001 RAL-352 1262 chrX 7784236 7784259 chrX 7784537 7784544 jockey 4 298 7.5 5.0 6.2 0.6 308 chrX 7784236 intergenic not near genes chrX 7784390 intergenic not near genes chrX 7784544 intergenic not near genes chrX_4_7780001 chrX_7780001 RAL-352 1263 chrX 7845734 7845752 chrX 7847224 7847243 hopper2 4 1491 4.0 1.5 2.8 1.1 1509 chrX 7845734 intergenic not near genes chrX 7846488 intergenic not near genes chrX 7847243 intergenic not near genes chrX_4_7845001 chrX_7845001 RAL-352 1264 chrX 8085593 8085603 chrX 8085665 8085681 4 77 3.0 0.5 1.8 1.4 88 chrX 8085593 intron,5` UTR CG2256 -,CR45535 + chrX 8085637 intron,5` UTR CG2256 -,CR45535 + chrX 8085681 intron,5` UTR CG2256 -,CR45535 + chrX_4_8085001 chrX_8085001 RAL-352 1265 chrX 8275313 8275346 chrX 8275400 8275433 7 85 2.0 2.5 2.2 2.2 120 chrX 8275313 exon CG1636 + chrX 8275373 3` UTR CG1636 + chrX 8275433 3` UTR CG1636 + chrX_7_8275001 chrX_8275001 RAL-352 1266 chrX 8355993 8356005 chrX 8356121 8356137 5 131 2.0 2.0 2.0 1.7 144 chrX 8355993 intron nAChRalpha3 - chrX 8356065 intron nAChRalpha3 - chrX 8356137 intron nAChRalpha3 - chrX_5_8355001 chrX_8355001 RAL-352 1267 chrX 8601035 8601058 chrX 8601120 8601137 4 84 0.0 1.0 0.5 2.7 102 chrX 8601035 3` UTR Crag + chrX 8601086 3` UTR Crag + chrX 8601137 3` UTR Crag + chrX_4_8600001 chrX_8600001 RAL-352 1268 chrX 8708701 8708718 chrX 8708894 8708901 4 186 13.5 4.0 8.8 0.4 200 chrX 8708701 intergenic not near genes chrX 8708801 intergenic not near genes chrX 8708901 intergenic not near genes chrX_4_8705001 chrX_8705001 RAL-352 1269 chrX 8727411 8727428 chrX 8727488 8727505 4 77 1.0 1.0 1.0 2.0 94 chrX 8727411 intergenic not near genes chrX 8727458 intergenic not near genes chrX 8727505 intergenic not near genes chrX_4_8725001 chrX_8725001 RAL-352 1270 chrX 8744291 8744315 chrX 8744443 8744464 6 151 0.0 2.0 1.0 3.0 173 chrX 8744291 intergenic not near genes chrX 8744378 intergenic not near genes chrX 8744464 intergenic not near genes chrX_6_8740001 chrX_8740001 RAL-352 1271 chrX 8922340 8922363 chrX 8922759 8922797 jockey 6 431 6.5 4.5 5.5 0.9 457 chrX 8922340 intron rdgA + chrX 8922568 intron rdgA + chrX 8922797 intron rdgA + chrX_6_8920001 chrX_8920001 RAL-352 1272 chrX 9072819 9072839 chrX 9072948 9072958 4 126 2.5 0.0 1.2 1.8 139 chrX 9072819 intron CG44325 - chrX 9072888 intron CG44325 - chrX 9072958 intron CG44325 - chrX_4_9070001 chrX_9070001 RAL-352 1273 chrX 9337952 9337972 chrX 9338044 9338057 5 88 2.5 5.0 3.8 1.0 105 chrX 9337952 intron CG34449 - chrX 9338004 intron CG34449 - chrX 9338057 exon CG34449 - chrX_5_9335001 chrX_9335001 RAL-352 1274 chrX 9391583 9391596 chrX 9391727 9391742 4 145 2.5 3.5 3.0 1.0 159 chrX 9391583 intron mgl - chrX 9391662 intron mgl - chrX 9391742 intron mgl - chrX_4_9390001 chrX_9390001 RAL-352 1275 chrX 9508137 9508170 chrX 9509653 9509684 jockey 6 1517 1.5 5.0 3.2 1.4 1547 chrX 9508137 intron CG32700 - chrX 9508910 intron CG32700 - chrX 9509684 intron CG32700 - chrX_6_9505001 chrX_9505001 RAL-352 1276 chrX 9575789 9575815 chrX 9576113 9576138 mdg3 8 322 4.5 2.0 3.2 1.9 349 chrX 9575789 intron,exon CG32699 -,CG42395 - chrX 9575964 intron,intron CG32699 -,CG42395 - chrX 9576138 intron,5` UTR CG32699 -,CG42395 - chrX_8_9575001 chrX_9575001 RAL-352 1277 chrX 9595350 9595383 chrX 9595434 9595463 8 83 3.5 3.5 3.5 1.8 113 chrX 9595350 5` UTR CR45543 + chrX 9595406 5` UTR CR45543 + chrX 9595463 5` UTR CR45543 + chrX_8_9595001 chrX_9595001 RAL-352 1278 chrX 9791864 9791895 chrX 9791961 9791992 4 92 1.5 2.0 1.8 1.4 128 chrX 9791864 intron CG32698 + chrX 9791928 intron CG32698 + chrX 9791992 intron CG32698 + chrX_4_9790001 chrX_9790001 RAL-352 1279 chrX 9839369 9839381 chrX 9839451 9839463 4 82 0.0 2.5 1.2 1.8 94 chrX 9839369 intron CG32698 + chrX 9839416 intron CG32698 + chrX 9839463 intron CG32698 + chrX_4_9835001 chrX_9835001 RAL-352 1280 chrX 9923395 9923422 chrX 9923484 9923513 10 87 2.5 2.0 2.2 3.1 118 chrX 9923395 intergenic not near genes chrX 9923454 intergenic not near genes chrX 9923513 intergenic not near genes chrX_10_9920001 chrX_9920001 RAL-352 1281 chrX 10154296 10154305 chrX 10154372 10154373 4 74 4.5 1.5 3.0 1.0 77 chrX 10154296 intron,intron CR44894 -,CG12645 + chrX 10154334 intron,intron CR44894 -,CG12645 + chrX 10154373 intron,intron CR44894 -,CG12645 + chrX_4_10150001 chrX_10150001 RAL-352 1282 chrX 10550878 10550888 chrX 10552326 10552340 hobo 5 1459 2.0 2.5 2.2 1.6 1462 chrX 10550878 intron spri - chrX 10551609 intron spri - chrX 10552340 intron spri - chrX_5_10550001 chrX_10550001 RAL-352 1283 chrX 10686069 10686082 chrX 10691206 10691219 roo 5 5135 1.0 3.5 2.2 1.6 5150 chrX 10686069 intron X11Lbeta + chrX 10688644 intron X11Lbeta + chrX 10691219 intron X11Lbeta + chrX_5_10685001 chrX_10685001 RAL-352 1284 chrX 10772683 10772696 chrX 10772766 10772778 Tirant 4 79 1.5 0.5 1.0 2.0 95 chrX 10772683 intron CG15211 + chrX 10772730 intron CG15211 + chrX 10772778 intron CG15211 + chrX_4_10770001 chrX_10770001 RAL-352 1285 chrX 11142007 11142092 chrX 11142058 11142168 4 66 0.0 0.0 0.0 4.0 161 chrX 11142007 intergenic CG15199 - chrX 11142088 intergenic CG15199 -,CG15202 + chrX 11142168 intergenic CG15199 -,CG15202 + chrX_4_11140001 chrX_11140001 RAL-352 1286 chrX 11235557 11235578 chrX 11235932 11235958 6 379 1.5 4.0 2.8 1.6 401 chrX 11235557 intron CG44422 - chrX 11235758 intron CG44422 - chrX 11235958 intron CG44422 - chrX_6_11235001 chrX_11235001 RAL-352 1287 chrX 11312081 11312084 chrX 11319419 11319422 Stalker2 4 7342 1.5 1.5 1.5 1.6 7341 chrX 11312081 intergenic not near genes chrX 11315752 intergenic not near genes chrX 11319422 intergenic not near genes chrX_4_11315001 chrX_11315001 RAL-352 1288 chrX 11633417 11633448 chrX 11640471 11640501 297 6 7051 1.5 1.0 1.2 2.7 7084 chrX 11633417 intron Ptp10D + chrX 11636959 intron Ptp10D + chrX 11640501 intron Ptp10D + chrX_6_11635001 chrX_11635001 RAL-352 1289 chrX 11719878 11719894 chrX 11719952 11719971 5 78 0.0 1.0 0.5 3.3 93 chrX 11719878 3` UTR prtp + chrX 11719924 intergenic prtp +,Tango10 + chrX 11719971 intergenic prtp +,Tango10 + chrX_5_11715001 chrX_11715001 RAL-352 1290 chrX 11804675 11804687 chrX 11804779 11804791 4 104 0.0 2.0 1.0 2.0 116 chrX 11804675 intron Hsc70-3 - chrX 11804733 intron Hsc70-3 - chrX 11804791 intron Hsc70-3 - chrX_4_11800001 chrX_11800001 RAL-352 1291 chrX 11839034 11839068 chrX 11839282 11839315 12 245 0.0 4.0 2.0 4.0 281 chrX 11839034 intergenic not near genes chrX 11839174 intergenic Cyp28c1 + chrX 11839315 intergenic Cyp28c1 + chrX_12_11835001 chrX_11835001 RAL-352 1292 chrX 11936571 11936586 chrX 11936668 11936684 6 98 0.5 3.0 1.8 2.1 113 chrX 11936571 intron cac - chrX 11936628 intron cac - chrX 11936684 intron cac - chrX_6_11935001 chrX_11935001 RAL-352 1293 chrX 12038100 12038115 chrX 12038294 12038309 9 193 4.5 5.5 5.0 1.5 209 chrX 12038100 intergenic not near genes chrX 12038204 intergenic not near genes chrX 12038309 intergenic not near genes chrX_9_12035001 chrX_12035001 RAL-352 1294 chrX 12168148 12168157 chrX 12173590 12173599 I-element 4 5442 1.0 1.5 1.2 1.8 5451 chrX 12168148 intron Ten-a + chrX 12170874 intron Ten-a + chrX 12173599 intron Ten-a + chrX_4_12170001 chrX_12170001 RAL-352 1295 chrX 12176738 12176769 chrX 12176813 12176839 10 71 5.0 4.5 4.8 1.7 101 chrX 12176738 intron,3` UTR Ten-a +,CG1924 - chrX 12176788 intron,3` UTR Ten-a +,CG1924 - chrX 12176839 intron,3` UTR Ten-a +,CG1924 - chrX_10_12175001 chrX_12175001 RAL-352 1296 chrX 12272849 12272871 chrX 12272928 12272950 4 78 1.0 0.0 0.5 2.7 101 chrX 12272849 intron Ten-a + chrX 12272900 intron Ten-a + chrX 12272950 intron Ten-a + chrX_4_12270001 chrX_12270001 RAL-352 1297 chrX 12350775 12350805 chrX 12350852 12350886 8 78 4.0 0.0 2.0 2.7 111 chrX 12350775 intergenic not near genes chrX 12350830 intergenic not near genes chrX 12350886 intergenic not near genes chrX_8_12350001 chrX_12350001 RAL-352 1298 chrX 12357007 12357039 chrX 12357162 12357193 9 155 1.5 0.5 1.0 4.5 186 chrX 12357007 intergenic not near genes chrX 12357100 intergenic not near genes chrX 12357193 intergenic not near genes chrX_9_12355001 chrX_12355001 RAL-352 1299 chrX 12648119 12648152 chrX 12648200 12648234 7 81 4.0 4.0 4.0 1.4 115 chrX 12648119 intron Tomosyn + chrX 12648176 intron Tomosyn + chrX 12648234 intron Tomosyn + chrX_7_12645001 chrX_12645001 RAL-352 1300 chrX 12953892 12953904 chrX 12954030 12954042 4 136 0.0 0.0 0.0 4.0 150 chrX 12953892 intron hec - chrX 12953967 intron hec - chrX 12954042 intron hec - chrX_4_12950001 chrX_12950001 RAL-352 1301 chrX 13172348 13172379 chrX 13172424 13172455 7 74 1.5 3.5 2.5 2.0 107 chrX 13172348 exon CG34411 - chrX 13172402 intron CG34411 - chrX 13172455 intron CG34411 - chrX_7_13170001 chrX_13170001 RAL-352 1302 chrX 13429467 13429494 chrX 13430616 13430643 jockey 4 1149 0.5 3.5 2.0 1.3 1176 chrX 13429467 intergenic not near genes chrX 13430055 intergenic not near genes chrX 13430643 intergenic not near genes chrX_4_13430001 chrX_13430001 RAL-352 1303 chrX 13569710 13569745 chrX 13569833 13569869 11 123 2.0 5.5 3.8 2.3 159 chrX 13569710 intron Tango13 + chrX 13569790 intron Tango13 + chrX 13569869 intron Tango13 + chrX_11_13565001 chrX_13565001 RAL-352 1304 chrX 13875957 13875977 chrX 13876041 13876061 4 84 0.0 0.5 0.2 3.3 104 chrX 13875957 intron mamo - chrX 13876009 intron mamo - chrX 13876061 intron mamo - chrX_4_13875001 chrX_13875001 RAL-352 1305 chrX 14105029 14105054 chrX 14114171 14114205 roo 9 9145 3.0 2.0 2.5 2.6 9176 chrX 14105029 intergenic not near genes chrX 14109617 intergenic not near genes chrX 14114205 5` UTR CR44657 + chrX_9_14105001 chrX_14105001 RAL-352 1306 chrX 14302592 14302630 chrX 14302670 14302690 7 70 1.5 1.0 1.2 3.2 98 chrX 14302592 intergenic not near genes chrX 14302641 intergenic not near genes chrX 14302690 intergenic not near genes chrX_7_14300001 chrX_14300001 RAL-352 1307 chrX 14312792 14312805 chrX 14312862 14312878 5 72 1.0 0.0 0.5 3.3 86 chrX 14312792 intergenic not near genes chrX 14312835 intergenic not near genes chrX 14312878 intergenic not near genes chrX_5_14310001 chrX_14310001 RAL-352 1308 chrX 14447677 14447689 chrX 14447753 14447768 4 78 0.0 5.0 2.5 1.1 91 chrX 14447677 intron dpr8 + chrX 14447722 intron dpr8 + chrX 14447768 intron dpr8 + chrX_4_14445001 chrX_14445001 RAL-352 1309 chrX 14636456 14636480 chrX 14641897 14641912 I-element 7 5439 6.0 1.5 3.8 1.5 5456 chrX 14636456 intron NetA - chrX 14639184 intron NetA - chrX 14641912 intron NetA - chrX_7_14635001 chrX_14635001 RAL-352 1310 chrX 15413058 15413064 chrX 15417360 15417366 Juan 4 4302 7.0 1.0 4.0 0.8 4308 chrX 15413058 intron Cngl - chrX 15415212 intron Cngl - chrX 15417366 intron Cngl - chrX_4_15415001 chrX_15415001 RAL-352 1311 chrX 15435687 15435699 chrX 15436116 15436129 rover 6 431 0.0 3.0 1.5 2.4 442 chrX 15435687 intron Cngl - chrX 15435908 intron Cngl - chrX 15436129 intron Cngl - chrX_6_15435001 chrX_15435001 RAL-352 1312 chrX 15678053 15678065 chrX 15678129 15678142 4 76 3.5 4.0 3.8 0.8 89 chrX 15678053 intergenic CG12708 + chrX 15678098 intergenic CG12708 + chrX 15678142 intergenic CG12708 + chrX_4_15675001 chrX_15675001 RAL-352 1313 chrX 15696684 15696695 chrX 15696810 15696818 5 132 1.5 0.5 1.0 2.5 134 chrX 15696684 intergenic not near genes chrX 15696751 intergenic not near genes chrX 15696818 intergenic not near genes chrX_5_15695001 chrX_15695001 RAL-352 1314 chrX 15818778 15818798 chrX 15818854 15818874 5 76 4.0 3.5 3.8 1.0 96 chrX 15818778 intron sd + chrX 15818826 intron sd + chrX 15818874 intron sd + chrX_5_15815001 chrX_15815001 RAL-352 1315 chrX 16176204 16176220 chrX 16176275 16176297 5 73 1.5 6.5 4.0 1.0 93 chrX 16176204 intergenic not near genes chrX 16176250 intergenic not near genes chrX 16176297 intergenic not near genes chrX_5_16175001 chrX_16175001 RAL-352 1316 chrX 16365070 16365094 chrX 16365148 16365176 9 81 1.0 1.5 1.2 4.1 106 chrX 16365070 intron nonA + chrX 16365123 intron nonA + chrX 16365176 intron nonA + chrX_9_16365001 chrX_16365001 RAL-352 1317 chrX 16677320 16677348 chrX 16677455 16677481 7 133 0.0 0.5 0.2 5.8 161 chrX 16677320 intergenic not near genes chrX 16677400 intergenic not near genes chrX 16677481 intergenic not near genes chrX_7_16675001 chrX_16675001 RAL-352 1318 chrX 16785294 16785301 chrX 16785378 16785405 6 100 3.0 0.0 1.5 2.4 111 chrX 16785294 3` UTR CG9609 - chrX 16785350 3` UTR CG9609 - chrX 16785405 3` UTR CG9609 - chrX_6_16785001 chrX_16785001 RAL-352 1319 chrX 17011777 17011995 chrX 17011853 17012078 10 74 2.5 2.0 2.2 3.1 301 chrX 17011777 intron CG45002 - chrX 17011928 intron CG45002 - chrX 17012078 intron CG45002 - chrX_10_17010001 chrX_17010001 RAL-352 1320 chrX 17047012 17047040 chrX 17047132 17047159 5 120 0.5 3.5 2.0 1.7 147 chrX 17047012 intron CG45002 - chrX 17047086 intron CG45002 - chrX 17047159 intron CG45002 - chrX_5_17045001 chrX_17045001 RAL-352 1321 chrX 17262180 17262193 chrX 17262266 17262279 4 84 2.0 4.5 3.2 1.0 99 chrX 17262180 intron f + chrX 17262230 intron f + chrX 17262279 intron f + chrX_4_17260001 chrX_17260001 RAL-352 1322 chrX 17282877 17282906 chrX 17282955 17282975 8 75 4.0 0.0 2.0 2.7 98 chrX 17282877 intron CG5445 + chrX 17282926 5` UTR CG5445 + chrX 17282975 5` UTR CG5445 + chrX_8_17280001 chrX_17280001 RAL-352 1323 chrX 17545005 17545038 chrX 17545087 17545120 7 81 2.0 1.0 1.5 2.8 115 chrX 17545005 intron CG43658 - chrX 17545062 intron CG43658 - chrX 17545120 intron CG43658 - chrX_7_17545001 chrX_17545001 RAL-352 1324 chrX 17782223 17782241 chrX 17782321 17782339 4 95 3.0 2.0 2.5 1.1 116 chrX 17782223 intergenic not near genes chrX 17782281 intergenic not near genes chrX 17782339 intergenic not near genes chrX_4_17780001 chrX_17780001 RAL-352 1325 chrX 17879653 17879687 chrX 17879759 17879793 15 103 2.5 4.0 3.2 3.6 140 chrX 17879653 intron mnb - chrX 17879723 intron mnb - chrX 17879793 intron mnb - chrX_15_17875001 chrX_17875001 RAL-352 1326 chrX 18194076 18194101 chrX 18194606 18194635 BS 9 531 1.0 2.5 1.8 3.2 559 chrX 18194076 intron Frq2 + chrX 18194356 intron Frq2 + chrX 18194635 intron Frq2 + chrX_9_18190001 chrX_18190001 RAL-352 1327 chrX 18427382 18427406 chrX 18427793 18427817 5 411 4.0 1.0 2.5 1.4 435 chrX 18427382 intergenic CG42323 + chrX 18427600 intergenic not near genes chrX 18427817 intergenic not near genes chrX_5_18425001 chrX_18425001 RAL-352 1328 chrX 18486110 18486125 chrX 18486199 18486211 6 88 2.0 5.0 3.5 1.3 101 chrX 18486110 exon psh - chrX 18486160 intron psh - chrX 18486211 intron psh - chrX_6_18485001 chrX_18485001 RAL-352 1329 chrX 18683107 18683126 chrX 18683181 18683202 5 68 3.5 3.5 3.5 1.1 95 chrX 18683107 3` UTR CR44707 - chrX 18683154 3` UTR CR44707 - chrX 18683202 3` UTR CR44707 - chrX_5_18680001 chrX_18680001 RAL-352 1330 chrX 18896526 18896545 chrX 18896636 18896655 6 110 0.5 1.5 1.0 3.0 129 chrX 18896526 3` UTR CG7349 + chrX 18896590 intergenic CG7349 + chrX 18896655 intergenic CG7349 + chrX_6_18895001 chrX_18895001 RAL-352 1331 chrX 18912443 18912477 chrX 18912535 18912559 8 87 2.5 2.5 2.5 2.3 116 chrX 18912443 5` UTR CR44708 + chrX 18912501 intron CR44708 + chrX 18912559 intron CR44708 + chrX_8_18910001 chrX_18910001 RAL-352 1332 chrX 18947505 18947532 chrX 18947598 18947625 5 88 2.0 1.5 1.8 1.8 120 chrX 18947505 intron CG43759 + chrX 18947565 intron CG43759 + chrX 18947625 intron CG43759 + chrX_5_18945001 chrX_18945001 RAL-352 1333 chrX 19037976 19037998 chrX 19038099 19038117 6 123 3.5 1.0 2.2 1.9 141 chrX 19037976 intergenic not near genes chrX 19038046 intergenic not near genes chrX 19038117 intergenic not near genes chrX_6_19035001 chrX_19035001 RAL-352 1334 chrX 19060413 19060437 chrX 19065189 19065221 Doc 4 4778 1.5 3.0 2.2 1.2 4808 chrX 19060413 intron CG14190 + chrX 19062817 intron CG14190 + chrX 19065221 intron CG14190 + chrX_4_19060001 chrX_19060001 RAL-352 1335 chrX 19071251 19071285 chrX 19071328 19071358 11 76 2.5 2.0 2.2 3.4 107 chrX 19071251 intergenic not near genes chrX 19071304 intergenic not near genes chrX 19071358 intergenic not near genes chrX_11_19070001 chrX_19070001 RAL-352 1336 chrX 19125698 19125719 chrX 19125827 19125848 6 127 0.5 3.0 1.8 2.1 150 chrX 19125698 intron tgy - chrX 19125773 intron tgy - chrX 19125848 intron tgy - chrX_6_19125001 chrX_19125001 RAL-352 1337 chrX 19176211 19176240 chrX 19176295 19176320 15 80 4.0 4.0 4.0 3.0 109 chrX 19176211 3` UTR CG7556 - chrX 19176266 3` UTR CG7556 - chrX 19176320 3` UTR CG7556 - chrX_15_19175001 chrX_19175001 RAL-352 1338 chrX 13057298 13057300 chrX 19242812 19242814 8 6185514 4.5 1.5 3.0 2.0 6185516 chrX 13057298 intron rad + chrX 16150056 intergenic not near genes chrX 19242814 intergenic not near genes chrX_8_16150001 chrX_16150001 RAL-352 1339 chrX 19472129 19472156 chrX 19472698 19472726 jockey 4 568 3.0 2.5 2.8 1.1 597 chrX 19472129 intergenic kek5 + chrX 19472428 intergenic not near genes chrX 19472726 intergenic not near genes chrX_4_19470001 chrX_19470001 RAL-352 1340 chrX 19500561 19500736 chrX 19500636 19500823 4 81 0.0 1.5 0.8 2.2 262 chrX 19500561 intron,intron CG14200 +,Pfrx + chrX 19500692 intron,intron CG14200 +,Pfrx + chrX 19500823 intron,intron CG14200 +,Pfrx + chrX_4_19500001 chrX_19500001 RAL-352 1341 chrX 19593953 19593977 chrX 19594037 19594060 9 84 1.0 8.5 4.8 1.6 107 chrX 19593953 exon CG14205 + chrX 19594006 intron CG14205 + chrX 19594060 intron CG14205 + chrX_9_19590001 chrX_19590001 RAL-352 1342 chrX 19710073 19710096 chrX 19711859 19711882 S-element 10 1785 1.0 2.5 1.8 3.6 1809 chrX 19710073 intron meso18E - chrX 19710978 intron meso18E - chrX 19711882 intron meso18E - chrX_10_19710001 chrX_19710001 RAL-352 1343 chrX 19976058 19976090 chrX 19976139 19976166 4 76 1.0 2.5 1.8 1.4 108 chrX 19976058 intergenic not near genes chrX 19976112 intergenic not near genes chrX 19976166 intergenic not near genes chrX_4_19975001 chrX_19975001 RAL-352 1344 chrX 19986934 19986952 chrX 19987269 19987287 10 334 4.0 5.5 4.8 1.7 353 chrX 19986934 intergenic not near genes chrX 19987110 intergenic not near genes chrX 19987287 intergenic not near genes chrX_10_19985001 chrX_19985001 RAL-352 1345 chrX 20105195 20105224 chrX 20105301 20105327 4 104 20.0 20.0 20.0 0.2 132 chrX 20105195 intergenic not near genes chrX 20105261 intergenic not near genes chrX 20105327 intergenic not near genes chrX_4_20105001 chrX_20105001 RAL-352 1346 chrX 20359144 20359157 chrX 20359212 20359212 4 67 3.0 1.0 2.0 1.3 68 chrX 20359144 intergenic not near genes chrX 20359178 intergenic not near genes chrX 20359212 intergenic not near genes chrX_4_20355001 chrX_20355001 RAL-352 1347 chrX 20369325 20369343 chrX 20369409 20369426 6 83 1.0 3.5 2.2 1.9 101 chrX 20369325 intergenic not near genes chrX 20369376 intergenic not near genes chrX 20369426 intergenic not near genes chrX_6_20365001 chrX_20365001 RAL-352 1348 chrX 20377325 20377349 chrX 20378788 20378816 hobo 10 1462 5.0 5.5 5.2 1.6 1491 chrX 20377325 intergenic not near genes chrX 20378070 intergenic not near genes chrX 20378816 intergenic not near genes chrX_10_20375001 chrX_20375001 RAL-352 1349 chrX 20836743 20836751 chrX 20844343 20844352 roo 4 7601 1.0 2.0 1.5 1.6 7609 chrX 20836743 intron shakB - chrX 20840548 intron shakB - chrX 20844352 intron shakB - chrX_4_20840001 chrX_20840001 RAL-352 1350 chrX 20940718 20940755 chrX 20942187 20942224 hobo 14 1465 2.5 4.0 3.2 3.3 1506 chrX 20940718 intergenic not near genes chrX 20941471 intergenic not near genes chrX 20942224 intergenic not near genes chrX_14_20940001 chrX_20940001 RAL-352 1351 chrX 20981031 20981059 chrX 20981132 20981156 4 101 0.5 0.0 0.2 3.3 125 chrX 20981031 intergenic not near genes chrX 20981094 intergenic not near genes chrX 20981156 intergenic not near genes chrX_4_20980001 chrX_20980001 RAL-352 1352 chrX 21086130 21086156 chrX 21087157 21087185 jockey 5 1028 2.5 0.5 1.5 2.0 1055 chrX 21086130 intergenic not near genes chrX 21086658 intergenic not near genes chrX 21087185 intergenic not near genes chrX_5_21085001 chrX_21085001 RAL-352 1353 chrX 21264735 21264759 chrX 21264808 21264835 6 71 1.0 2.0 1.5 2.4 100 chrX 21264735 intron CG32521 - chrX 21264785 intron CG32521 - chrX 21264835 intron CG32521 - chrX_6_21260001 chrX_21260001 RAL-352 1354 chrX 21404912 21404946 chrX 21405163 21405197 12 253 30.5 28.0 29.2 0.4 285 chrX 21404912 intergenic not near genes chrX 21405054 intergenic not near genes chrX 21405197 intergenic not near genes chrX_12_21405001 chrX_21405001 RAL-352 1355 chrX 21458694 21458723 chrX 21464130 21464155 Ivk 5 5434 0.0 0.5 0.2 4.2 5461 chrX 21458694 intergenic not near genes chrX 21461424 intergenic not near genes chrX 21464155 intergenic not near genes chrX_5_21460001 chrX_21460001 RAL-352 1356 chrX 22259781 22259795 chrX 22382679 22382686 4 122896 17.0 5.0 11.0 0.3 122905 chrX 22259781 intergenic not near genes chrX 22321234 intergenic not near genes chrX 22382686 intergenic not near genes chrX_4_22320001 chrX_22320001 RAL-352 1357 chrX 22660576 22660597 chrX 22660660 22660666 7 82 3.0 1.5 2.2 2.2 90 chrX 22660576 intron CR44997 + chrX 22660621 intron CR44997 + chrX 22660666 intron CR44997 + chrX_7_22660001 chrX_22660001 RAL-352 1358 chrX 22697508 22697523 chrX 22701783 22701820 Juan 4 4292 1.0 1.5 1.2 1.8 4312 chrX 22697508 intron CR44997 + chrX 22699664 intron CR44997 + chrX 22701820 intron CR44997 + chrX_4_22695001 chrX_22695001 RAL-352 1359 chrX 22763616 22763646 chrX 22763698 22763708 7 82 2.0 3.0 2.5 2.0 92 chrX 22763616 intron CR44997 + chrX 22763662 intron CR44997 + chrX 22763708 intron CR44997 + chrX_7_22760001 chrX_22760001 RAL-352 1360 chrX 22771511 22771530 chrX 22774802 22774811 297 5 3287 3.0 3.0 3.0 1.2 3300 chrX 22771511 intron CR44997 + chrX 22773161 intron CR44997 + chrX 22774811 intron CR44997 + chrX_5_22770001 chrX_22770001 RAL-352 1361 chrX 22992393 22992413 chrX 22992524 22992544 6 131 2.0 0.5 1.2 2.7 151 chrX 22992393 intron,intron stnA -,stnB - chrX 22992468 intron,intron stnA -,stnB - chrX 22992544 intron,intron stnA -,stnB - chrX_6_22990001 chrX_22990001 RAL-352 1362 chrY 975593 975828 chrY 975710 975920 15 129 167.0 167.0 167.0 0.1 327 chrY 975593 intergenic not near genes chrY 975756 intergenic not near genes chrY 975920 intergenic not near genes chrY_15_975001 chrY_975001 RAL-352