SV#	Chr_5p	Chr_coord_5p_start	Chr_coord_5p_end	Chr_3p	Chr_coord_3p_start	Chr_coord_3p_end	repName	Reads_collapsed	avg_del_len	RefGen_3prime	Refgen_5prime	RefGen_Avg	Coverage_Ratio	size	Chr_5p	Chr_coord_5p	classification_5p	comment_5p	Chr_mid	Chr_coord_mid	classification_mid	comment_mid	Chr_3p	Chr_coord_3p	classification_3p	comment_3p	depletion_code	loci_code	libname
1	chr2L	47445	47461	chr2L	52572	52591	jockey	11	5127	23.0	10.0	16.5	0.6	5146	chr2L	47445	intron	Cda5 -	chr2L	50018	intron	Cda5 -	chr2L	52591	intron	Cda5 -	chr2L_11_50001	chr2L_50001	RAL-340_100b
2	chr2L	47462	47481	chr2L	52569	52611	jockey	14	5124	14.5	10.0	12.2	1.1	5149	chr2L	47462	intron	Cda5 -	chr2L	50036	intron	Cda5 -	chr2L	52611	intron	Cda5 -	chr2L_14_50001	chr2L_50001	RAL-340_100b
7	chr2L	347868	347918	chr2L	355393	355442	blood	20	7523	6.5	11.0	8.8	2.0	7574	chr2L	347868	3` UTR	Plc21C +	chr2L	351655	intron	Plc21C +	chr2L	355442	3` UTR	Plc21C +	chr2L_20_350001	chr2L_350001	RAL-340_100b
18	chr2L	686915	686919	chr2L	695980	695984	roo	4	9065	16.0	12.0	14.0	0.3	9069	chr2L	686915	intron	ds -	chr2L	691450	intron	ds -	chr2L	695984	intron	ds -	chr2L_4_690001	chr2L_690001	RAL-340_100b
19	chr2L	686920	686920	chr2L	695969	695984	roo	4	9059	16.0	11.5	13.8	0.3	9064	chr2L	686920	intron	ds -	chr2L	691452	intron	ds -	chr2L	695984	intron	ds -	chr2L_4_690001	chr2L_690001	RAL-340_100b
20	chr2L	686921	686944	chr2L	695965	696008	roo	17	9061	14.0	11.0	12.5	1.3	9087	chr2L	686921	intron	ds -	chr2L	691464	intron	ds -	chr2L	696008	intron	ds -	chr2L_17_690001	chr2L_690001	RAL-340_100b
23	chr2L	770444	770478	chr2L	772250	772254	Bari1	10	1799	9.5	4.0	6.8	1.3	1810	chr2L	770444	intergenic	not near genes	chr2L	771349	intergenic	not near genes	chr2L	772254	intergenic	CR44614 +	chr2L_10_770001	chr2L_770001	RAL-340_100b
31	chr2L	976864	976907	chr2L	984516	984547	roo	21	7656	10.5	15.0	12.8	1.5	7683	chr2L	976864	intergenic	not near genes	chr2L	980706	intergenic	not near genes	chr2L	984547	intergenic	not near genes	chr2L_21_980001	chr2L_980001	RAL-340_100b
32	chr2L	996698	996752	chr2L	1005818	1005872	roo	26	9119	2.5	5.5	4.0	5.2	9174	chr2L	996698	intergenic	not near genes	chr2L	1001285	intergenic	not near genes	chr2L	1005872	intergenic	not near genes	chr2L_26_1000001	chr2L_1000001	RAL-340_100b
43	chr2L	1220114	1220153	chr2L	1227599	1227644	blood	19	7487	10.5	7.0	8.8	1.9	7530	chr2L	1220114	intron	CG42329 +	chr2L	1223879	intron	CG42329 +	chr2L	1227644	intron	CG42329 +	chr2L_19_1220001	chr2L_1220001	RAL-340_100b
54	chr2L	1570667	1570700	chr2L	1573564	1573597	F-element	18	2894	22.0	11.5	16.8	1.0	2930	chr2L	1570667	intron	haf +	chr2L	1572132	intron	haf +	chr2L	1573597	intron	haf +	chr2L_18_1570001	chr2L_1570001	RAL-340_100b
55	chr2L	1570702	1570716	chr2L	1573559	1573613	F-element	8	2886	14.5	10.5	12.5	0.6	2911	chr2L	1570702	intron	haf +	chr2L	1572158	intron	haf +	chr2L	1573613	intron	haf +	chr2L_8_1570001	chr2L_1570001	RAL-340_100b
58	chr2L	1678953	1678991	chr2L	1686443	1686481	blood	13	7481	13.5	7.5	10.5	1.1	7528	chr2L	1678953	intron	chinmo +	chr2L	1682717	intron	chinmo +	chr2L	1686481	intron	chinmo +	chr2L_13_1680001	chr2L_1680001	RAL-340_100b
59	chr2L	1711355	1711363	chr2L	1711683	1711695	mdg3	6	338	11.0	11.0	11.0	0.5	340	chr2L	1711355	3` UTR,3` UTR	mRpL48 +,frtz -	chr2L	1711525	3` UTR	frtz -	chr2L	1711695	3` UTR	frtz -	chr2L_6_1710001	chr2L_1710001	RAL-340_100b
60	chr2L	1711364	1711384	chr2L	1711680	1711693	mdg3	12	340	7.0	10.5	8.8	1.2	329	chr2L	1711364	3` UTR,3` UTR	mRpL48 +,frtz -	chr2L	1711528	3` UTR	frtz -	chr2L	1711693	3` UTR	frtz -	chr2L_12_1710001	chr2L_1710001	RAL-340_100b
73	chr2L	2100376	2100391	chr2L	2109540	2109547	roo	9	9164	13.5	12.5	13.0	0.6	9171	chr2L	2100376	intron	dpr3 -	chr2L	2104962	intron	dpr3 -	chr2L	2109547	intron	dpr3 -	chr2L_9_2100001	chr2L_2100001	RAL-340_100b
74	chr2L	2100394	2100406	chr2L	2109529	2109552	roo	6	9150	6.5	10.5	8.5	0.6	9158	chr2L	2100394	intron	dpr3 -	chr2L	2104973	intron	dpr3 -	chr2L	2109552	intron	dpr3 -	chr2L_6_2100001	chr2L_2100001	RAL-340_100b
75	chr2L	2112119	2112146	chr2L	2119773	2119802	opus	18	7656	2.0	10.5	6.2	2.5	7683	chr2L	2112119	intergenic	not near genes	chr2L	2115960	intergenic	not near genes	chr2L	2119802	intergenic	not near genes	chr2L_18_2115001	chr2L_2115001	RAL-340_100b
84	chr2L	2294031	2294046	chr2L	2299250	2299276	copia	8	5223	10.5	6.0	8.2	0.9	5245	chr2L	2294031	intergenic	not near genes	chr2L	2296654	intergenic	not near genes	chr2L	2299276	intergenic	not near genes	chr2L_8_2295001	chr2L_2295001	RAL-340_100b
95	chr2L	2565517	2565566	chr2L	2571610	2571659	297	14	6091	11.5	4.0	7.8	1.6	6142	chr2L	2565517	exon	Cyp309a2 -	chr2L	2568588	intron	Cyp309a2 -	chr2L	2571659	exon	Cyp309a2 -	chr2L_14_2565001	chr2L_2565001	RAL-340_100b
96	chr2L	2661219	2661221	chr2L	2663031	2663068	I-element	8	1824	10.0	6.5	8.2	0.9	1849	chr2L	2661219	intergenic	not near genes	chr2L	2662144	intergenic	not near genes	chr2L	2663068	intergenic	not near genes	chr2L_8_2660001	chr2L_2660001	RAL-340_100b
97	chr2L	2661223	2661235	chr2L	2663030	2663062	I-element	23	1829	6.0	6.5	6.2	3.2	1839	chr2L	2661223	intergenic	not near genes	chr2L	2662142	intergenic	not near genes	chr2L	2663062	intergenic	not near genes	chr2L_23_2660001	chr2L_2660001	RAL-340_100b
102	chr2L	2772585	2772630	chr2L	2779194	2779201	297	28	6603	20.5	22.0	21.2	1.3	6616	chr2L	2772585	3` UTR	Syt1 -	chr2L	2775893	intron	Syt1 -	chr2L	2779201	3` UTR	Syt1 -	chr2L_28_2775001	chr2L_2775001	RAL-340_100b
110	chr2L	2933277	2933324	chr2L	2935479	2935486	pogo	18	2194	7.5	9.5	8.5	1.9	2209	chr2L	2933277	intron	lilli +	chr2L	2934382	intron	lilli +	chr2L	2935486	intron	lilli +	chr2L_18_2930001	chr2L_2930001	RAL-340_100b
112	chr2L	3073012	3073028	chr2L	3078240	3078256	copia	9	5227	19.0	11.5	15.2	0.6	5244	chr2L	3073012	intron	toc -	chr2L	3075634	intron	toc -	chr2L	3078256	intron	toc -	chr2L_9_3075001	chr2L_3075001	RAL-340_100b
113	chr2L	3073029	3073060	chr2L	3078237	3078288	copia	13	5225	9.5	11.5	10.5	1.1	5259	chr2L	3073029	intron	toc -	chr2L	3075658	intron	toc -	chr2L	3078288	intron	toc -	chr2L_13_3075001	chr2L_3075001	RAL-340_100b
124	chr2L	3251471	3251523	chr2L	3259060	3259113	springer	12	7589	3.5	13.5	8.5	1.3	7642	chr2L	3251471	intergenic	not near genes	chr2L	3255292	intergenic	not near genes	chr2L	3259113	intergenic	not near genes	chr2L_12_3255001	chr2L_3255001	RAL-340_100b
130	chr2L	3388581	3388623	chr2L	3388847	3388885	pogo	13	264	5.5	7.5	6.5	1.7	304	chr2L	3388581	intergenic	CG42460 -	chr2L	3388733	intergenic	CG42460 -	chr2L	3388885	intergenic	CG42460 -,CR44791 +	chr2L_13_3385001	chr2L_3385001	RAL-340_100b
138	chr2L	3649765	3649774	chr2L	3654992	3655001	copia	5	5227	6.5	9.0	7.8	0.6	5236	chr2L	3649765	intron	for -	chr2L	3652383	intron	for -	chr2L	3655001	intron	for -	chr2L_5_3650001	chr2L_3650001	RAL-340_100b
139	chr2L	3649777	3649806	chr2L	3654988	3655033	copia	24	5223	6.0	8.5	7.2	2.9	5256	chr2L	3649777	intron	for -	chr2L	3652405	intron	for -	chr2L	3655033	intron	for -	chr2L_24_3650001	chr2L_3650001	RAL-340_100b
176	chr2L	4601684	4601736	chr2L	4609150	4609202	mdg1	27	7464	7.0	6.0	6.5	3.6	7518	chr2L	4601684	intron	dp -	chr2L	4605443	intron	dp -	chr2L	4609202	intron	dp -	chr2L_27_4605001	chr2L_4605001	RAL-340_100b
179	chr2L	4661820	4661854	chr2L	4669425	4669439	opus	8	7600	10.5	11.0	10.8	0.7	7619	chr2L	4661820	intergenic	not near genes	chr2L	4665630	intergenic	not near genes	chr2L	4669439	intergenic	not near genes	chr2L_8_4665001	chr2L_4665001	RAL-340_100b
190	chr2L	4918144	4918195	chr2L	4923242	4923331	jockey	4	5117	4.0	0.5	2.2	1.2	5187	chr2L	4918144	intron	hoe1 -	chr2L	4920738	intron	hoe1 -	chr2L	4923331	intron	hoe1 -	chr2L_4_4920001	chr2L_4920001	RAL-340_100b
193	chr2L	4953504	4953510	chr2L	4953770	4953776	pogo	5	266	15.5	0.0	7.8	0.6	272	chr2L	4953504	intergenic	Jon25Bii -	chr2L	4953640	intergenic	not near genes	chr2L	4953776	intergenic	not near genes	chr2L_5_4950001	chr2L_4950001	RAL-340_100b
205	chr2L	5342789	5342794	chr2L	5345159	5345164	Doc	5	2370	6.0	2.5	4.2	1.0	2375	chr2L	5342789	intergenic	not near genes	chr2L	5343976	intergenic	not near genes	chr2L	5345164	intergenic	not near genes	chr2L_5_5340001	chr2L_5340001	RAL-340_100b
216	chr2L	5827692	5827710	chr2L	5836725	5836743	roo	4	9033	9.5	12.0	10.8	0.3	9051	chr2L	5827692	intron	TrissinR +	chr2L	5832218	intron	TrissinR +	chr2L	5836743	intron	TrissinR +	chr2L_4_5830001	chr2L_5830001	RAL-340_100b
217	chr2L	5827711	5827738	chr2L	5836724	5836769	roo	13	9028	5.0	12.0	8.5	1.4	9058	chr2L	5827711	intron	TrissinR +	chr2L	5832240	intron	TrissinR +	chr2L	5836769	intron	TrissinR +	chr2L_13_5830001	chr2L_5830001	RAL-340_100b
232	chr2L	6363128	6363154	chr2L	6366073	6366100	Burdock	20	2942	14.5	7.5	11.0	1.7	2972	chr2L	6363128	intergenic	not near genes	chr2L	6364614	intergenic	not near genes	chr2L	6366100	intergenic	not near genes	chr2L_20_6360001	chr2L_6360001	RAL-340_100b
233	chr2L	6363159	6363181	chr2L	6366070	6366128	Burdock	14	2939	9.5	7.0	8.2	1.5	2969	chr2L	6363159	intergenic	not near genes	chr2L	6364644	intergenic	not near genes	chr2L	6366128	intergenic	not near genes	chr2L_14_6360001	chr2L_6360001	RAL-340_100b
234	chr2L	6426836	6426885	chr2L	6445121	6445169	roo	29	18281	8.5	12.0	10.2	2.6	18333	chr2L	6426836	3` UTR	CG9527 -	chr2L	6436002	intron	CG9527 -	chr2L	6445169	exon	CG9527 -	chr2L_29_6435001	chr2L_6435001	RAL-340_100b
249	chr2L	6876771	6876788	chr2L	6882967	6882985	diver	12	6194	15.0	6.5	10.8	1.0	6214	chr2L	6876771	intron	Nlg2 +	chr2L	6879878	intron	Nlg2 +	chr2L	6882985	intron	Nlg2 +	chr2L_12_6875001	chr2L_6875001	RAL-340_100b
252	chr2L	6991407	6991435	chr2L	6998551	6998579	HMS-Beagle	9	7144	10.5	5.5	8.0	1.0	7172	chr2L	6991407	intron	uif -	chr2L	6994993	intron	uif -	chr2L	6998579	intron	uif -	chr2L_9_6990001	chr2L_6990001	RAL-340_100b
266	chr2L	7343306	7343338	chr2L	7350447	7350478	roo	13	7137	17.0	20.0	18.5	0.7	7172	chr2L	7343306	intron	Wnt6 +	chr2L	7346892	intron	Wnt6 +	chr2L	7350478	intron	Wnt6 +	chr2L_13_7345001	chr2L_7345001	RAL-340_100b
267	chr2L	7343343	7343350	chr2L	7350439	7350489	roo	8	7130	12.5	16.0	14.2	0.5	7146	chr2L	7343343	intron	Wnt6 +	chr2L	7346916	intron	Wnt6 +	chr2L	7350489	intron	Wnt6 +	chr2L_8_7345001	chr2L_7345001	RAL-340_100b
285	chr2L	7959022	7959041	chr2L	7960458	7960477	pogo	6	1436	10.5	9.5	10.0	0.5	1455	chr2L	7959022	intron	Snoo -	chr2L	7959750	intron	Snoo -	chr2L	7960477	intron	Snoo -	chr2L_6_7955001	chr2L_7955001	RAL-340_100b
286	chr2L	7959046	7959071	chr2L	7960451	7960506	pogo	11	1430	2.0	5.5	3.8	2.3	1460	chr2L	7959046	intron	Snoo -	chr2L	7959776	intron	Snoo -	chr2L	7960506	intron	Snoo -	chr2L_11_7955001	chr2L_7955001	RAL-340_100b
287	chr2L	7977064	7977110	chr2L	7984065	7984109	297	33	6999	15.5	10.0	12.8	2.4	7045	chr2L	7977064	intron	Snoo -	chr2L	7980586	intron	Snoo -	chr2L	7984109	intron,5` UTR	Snoo -,CG7231 +	chr2L_33_7980001	chr2L_7980001	RAL-340_100b
288	chr2L	8013595	8013609	chr2L	8018824	8018838	copia	7	5228	22.5	2.0	12.2	0.5	5243	chr2L	8013595	intron	Tg +	chr2L	8016216	intron	Tg +	chr2L	8018838	intron	Tg +	chr2L_7_8015001	chr2L_8015001	RAL-340_100b
289	chr2L	8018818	8018833	chr2L	8023623	8023642	Doc	10	4808	0.5	14.5	7.5	1.2	4824	chr2L	8018818	intron	Tg +	chr2L	8021230	intron	Tg +	chr2L	8023642	intron	Tg +	chr2L_10_8020001	chr2L_8020001	RAL-340_100b
297	chr2L	8452400	8452439	chr2L	8461596	8461635	roo	11	9193	16.5	15.0	15.8	0.7	9235	chr2L	8452400	intron	fu12 -	chr2L	8457018	intron	fu12 -	chr2L	8461635	intron	fu12 -	chr2L_11_8455001	chr2L_8455001	RAL-340_100b
301	chr2L	8594460	8594492	chr2L	8601519	8601571	297	8	7073	6.5	1.0	3.8	1.7	7111	chr2L	8594460	intron,3` UTR	Sema-1a +,CR43855 -	chr2L	8598016	intron	Sema-1a +	chr2L	8601571	intron	Sema-1a +	chr2L_8_8595001	chr2L_8595001	RAL-340_100b
302	chr2L	8723102	8723145	chr2L	8731494	8731540	Tirant	15	8399	2.0	8.0	5.0	2.5	8438	chr2L	8723102	intron	raw -	chr2L	8727321	intron	raw -	chr2L	8731540	intron	raw -	chr2L_15_8725001	chr2L_8725001	RAL-340_100b
313	chr2L	9000259	9000308	chr2L	9007794	9007813	roo	17	7532	8.0	7.0	7.5	2.0	7554	chr2L	9000259	intergenic	Try29F +	chr2L	9004036	intergenic	not near genes	chr2L	9007813	intergenic	not near genes	chr2L_17_9000001	chr2L_9000001	RAL-340_100b
331	chr2L	9393471	9393476	chr2L	9396463	9396468	jockey	6	2992	23.0	5.0	14.0	0.4	2997	chr2L	9393471	intron	Shawl -	chr2L	9394970	intron	Shawl -	chr2L	9396468	intron	Shawl -	chr2L_6_9390001	chr2L_9390001	RAL-340_100b
332	chr2L	9393486	9393525	chr2L	9396463	9396517	jockey	31	2990	9.5	5.0	7.2	3.8	3031	chr2L	9393486	intron	Shawl -	chr2L	9395002	intron	Shawl -	chr2L	9396517	intron	Shawl -	chr2L_31_9390001	chr2L_9390001	RAL-340_100b
347	chr2L	9973709	9973758	chr2L	9980853	9980896	HMS-Beagle	18	7135	5.0	9.5	7.2	2.2	7187	chr2L	9973709	intergenic	not near genes	chr2L	9977302	intergenic	not near genes	chr2L	9980896	intergenic	not near genes	chr2L_18_9975001	chr2L_9975001	RAL-340_100b
357	chr2L	10156302	10156346	chr2L	10163797	10163841	blood	12	7493	18.5	6.5	12.5	0.9	7539	chr2L	10156302	intron,3` UTR	CG44153 -,CG4839 +	chr2L	10160072	intron	CG44153 -	chr2L	10163841	intron	CG44153 -	chr2L_12_10160001	chr2L_10160001	RAL-340_100b
378	chr2L	10592826	10592832	chr2L	10600513	10600519	opus	4	7687	5.5	6.5	6.0	0.6	7693	chr2L	10592826	intron	Trim9 +	chr2L	10596672	intron	Trim9 +	chr2L	10600519	intron	Trim9 +	chr2L_4_10595001	chr2L_10595001	RAL-340_100b
379	chr2L	10592834	10592873	chr2L	10600511	10600560	opus	21	7682	3.0	6.5	4.8	3.6	7726	chr2L	10592834	intron	Trim9 +	chr2L	10596697	intron	Trim9 +	chr2L	10600560	intron	Trim9 +	chr2L_21_10595001	chr2L_10595001	RAL-340_100b
396	chr2L	10862838	10862879	chr2L	10864457	10864463	Rt1c	25	1625	8.5	9.5	9.0	2.5	1625	chr2L	10862838	3` UTR	CR43807 -	chr2L	10863650	intron	CR43807 -	chr2L	10864463	3` UTR	CR43807 -	chr2L_25_10860001	chr2L_10860001	RAL-340_100b
401	chr2L	10946942	10946968	chr2L	10956165	10956208	roo	14	9235	12.5	20.0	16.2	0.8	9266	chr2L	10946942	intron	dpr2 -	chr2L	10951575	intron	dpr2 -	chr2L	10956208	intron	dpr2 -	chr2L_14_10950001	chr2L_10950001	RAL-340_100b
410	chr2L	11315255	11315267	chr2L	11317674	11317695	G2	9	2427	8.0	1.5	4.8	1.6	2440	chr2L	11315255	intergenic	not near genes	chr2L	11316475	intergenic	not near genes	chr2L	11317695	intergenic	not near genes	chr2L_9_11315001	chr2L_11315001	RAL-340_100b
425	chr2L	11540557	11540606	chr2L	11547984	11548033	Tabor	8	7425	3.5	11.0	7.2	1.0	7476	chr2L	11540557	intergenic	not near genes	chr2L	11544295	intergenic	not near genes	chr2L	11548033	intergenic	not near genes	chr2L_8_11540001	chr2L_11540001	RAL-340_100b
426	chr2L	11563631	11563664	chr2L	11568843	11568893	copia	9	5220	6.5	7.5	7.0	1.1	5262	chr2L	11563631	intergenic	not near genes	chr2L	11566262	intergenic	not near genes	chr2L	11568893	intergenic	not near genes	chr2L_9_11565001	chr2L_11565001	RAL-340_100b
428	chr2L	11614037	11614086	chr2L	11615546	11615563	hopper2	24	1500	11.5	13.0	12.2	1.8	1526	chr2L	11614037	intron	kek2 +	chr2L	11614800	intron	kek2 +	chr2L	11615563	intron	kek2 +	chr2L_24_11610001	chr2L_11610001	RAL-340_100b
435	chr2L	11713486	11713509	chr2L	11720979	11720992	blood	5	7489	13.5	8.5	11.0	0.4	7506	chr2L	11713486	intergenic	not near genes	chr2L	11717239	intergenic	not near genes	chr2L	11720992	intergenic	CR44143 +	chr2L_5_11715001	chr2L_11715001	RAL-340_100b
436	chr2L	11713511	11713540	chr2L	11720976	11721021	blood	14	7485	10.0	8.0	9.0	1.4	7510	chr2L	11713511	intergenic	not near genes	chr2L	11717266	intergenic	not near genes	chr2L	11721021	intergenic	CR44143 +	chr2L_14_11715001	chr2L_11715001	RAL-340_100b
447	chr2L	12067312	12067331	chr2L	12074389	12074408	297	9	7077	18.5	11.0	14.8	0.6	7096	chr2L	12067312	intergenic	not near genes	chr2L	12070860	intergenic	not near genes	chr2L	12074408	intergenic	not near genes	chr2L_9_12070001	chr2L_12070001	RAL-340_100b
448	chr2L	12067332	12067340	chr2L	12074387	12074417	297	10	7074	15.5	10.5	13.0	0.7	7085	chr2L	12067332	intergenic	not near genes	chr2L	12070874	intergenic	not near genes	chr2L	12074417	intergenic	not near genes	chr2L_10_12070001	chr2L_12070001	RAL-340_100b
449	chr2L	12067343	12067352	chr2L	12074415	12074429	297	6	7076	11.5	21.0	16.2	0.3	7086	chr2L	12067343	intergenic	not near genes	chr2L	12070886	intergenic	not near genes	chr2L	12074429	intergenic	not near genes	chr2L_6_12070001	chr2L_12070001	RAL-340_100b
450	chr2L	12067353	12067357	chr2L	12074387	12074429	297	4	7056	10.0	10.5	10.2	0.4	7076	chr2L	12067353	intergenic	not near genes	chr2L	12070891	intergenic	not near genes	chr2L	12074429	intergenic	not near genes	chr2L_4_12070001	chr2L_12070001	RAL-340_100b
470	chr2L	12558304	12558350	chr2L	12565458	12565504	HMS-Beagle	22	7152	4.5	8.5	6.5	2.9	7200	chr2L	12558304	intergenic	not near genes	chr2L	12561904	intergenic	not near genes	chr2L	12565504	intergenic	not near genes	chr2L_22_12560001	chr2L_12560001	RAL-340_100b
476	chr2L	12728896	12728949	chr2L	12729163	12729175	pogo	22	264	7.5	5.5	6.5	2.9	279	chr2L	12728896	intron	MRP +	chr2L	12729036	intron	MRP +	chr2L	12729175	intron	MRP +	chr2L_22_12725001	chr2L_12725001	RAL-340_100b
477	chr2L	12731035	12731089	chr2L	12735827	12735860	F-element	20	4789	7.0	14.0	10.5	1.7	4825	chr2L	12731035	intron	MRP +	chr2L	12733448	intron	MRP +	chr2L	12735860	intron	MRP +	chr2L_20_12730001	chr2L_12730001	RAL-340_100b
478	chr2L	12739153	12739190	chr2L	12743959	12743996	Doc	22	4804	15.5	19.0	17.2	1.2	4843	chr2L	12739153	exon	MRP +	chr2L	12741574	intron	MRP +	chr2L	12743996	exon	MRP +	chr2L_22_12740001	chr2L_12740001	RAL-340_100b
479	chr2L	12763813	12763864	chr2L	12764038	12764089	BS	5	229	0.0	1.5	0.8	2.8	276	chr2L	12763813	intergenic	not near genes	chr2L	12763951	intergenic	not near genes	chr2L	12764089	intergenic	not near genes	chr2L_5_12760001	chr2L_12760001	RAL-340_100b
480	chr2L	12781780	12781815	chr2L	12789255	12789289	Quasimodo	11	7471	11.5	14.0	12.8	0.8	7509	chr2L	12781780	intergenic	not near genes	chr2L	12785534	intergenic	not near genes	chr2L	12789289	intergenic	not near genes	chr2L_11_12785001	chr2L_12785001	RAL-340_100b
481	chr2L	12791585	12791627	chr2L	12795285	12795327	F-element	11	3689	4.0	12.5	8.2	1.2	3742	chr2L	12791585	intergenic	not near genes	chr2L	12793456	intergenic	not near genes	chr2L	12795327	intergenic	not near genes	chr2L_11_12790001	chr2L_12790001	RAL-340_100b
482	chr2L	12791628	12791634	chr2L	12795277	12795278	F-element	4	3662	4.0	10.0	7.0	0.5	3650	chr2L	12791628	intergenic	not near genes	chr2L	12793453	intergenic	not near genes	chr2L	12795278	intergenic	not near genes	chr2L_4_12790001	chr2L_12790001	RAL-340_100b
486	chr2L	12861671	12861693	chr2L	12863163	12863185	hobo	17	1491	33.0	6.5	19.8	0.8	1514	chr2L	12861671	intergenic	not near genes	chr2L	12862428	intergenic	not near genes	chr2L	12863185	intergenic	not near genes	chr2L_17_12860001	chr2L_12860001	RAL-340_100b
487	chr2L	12861694	12861729	chr2L	12863160	12863182	hobo	24	1474	12.5	6.5	9.5	2.3	1488	chr2L	12861694	intergenic	not near genes	chr2L	12862438	intergenic	not near genes	chr2L	12863182	intergenic	not near genes	chr2L_24_12860001	chr2L_12860001	RAL-340_100b
488	chr2L	12894012	12894049	chr2L	12895486	12895537	hobo	17	1478	11.5	11.5	11.5	1.4	1525	chr2L	12894012	intergenic	not near genes	chr2L	12894774	intergenic	not near genes	chr2L	12895537	intergenic	not near genes	chr2L_17_12890001	chr2L_12890001	RAL-340_100b
489	chr2L	12933828	12933879	chr2L	12941320	12941371	blood	22	7488	13.0	11.0	12.0	1.7	7543	chr2L	12933828	intergenic	not near genes	chr2L	12937600	intergenic	not near genes	chr2L	12941371	intergenic	not near genes	chr2L_22_12935001	chr2L_12935001	RAL-340_100b
491	chr2L	13036229	13036270	chr2L	13036490	13036537	X-element	17	265	8.0	5.5	6.8	2.2	308	chr2L	13036229	intron	CG9932 -	chr2L	13036383	intron	CG9932 -	chr2L	13036537	intron	CG9932 -	chr2L_17_13035001	chr2L_13035001	RAL-340_100b
501	chr2L	13405624	13405673	chr2L	13410446	13410495	Doc	24	4819	7.0	13.5	10.2	2.1	4871	chr2L	13405624	exon	CG7110 +	chr2L	13408060	intron	CG7110 +	chr2L	13410495	intron	CG7110 +	chr2L_24_13405001	chr2L_13405001	RAL-340_100b
502	chr2L	13449447	13449495	chr2L	13456897	13456956	Quasimodo	13	7459	5.0	6.0	5.5	2.0	7509	chr2L	13449447	intron,5` UTR	CG42784 +,Hsp60D -	chr2L	13453202	intron	CG42784 +	chr2L	13456956	intron	CG42784 +	chr2L_13_13450001	chr2L_13450001	RAL-340_100b
503	chr2L	13481435	13481469	chr2L	13482067	13482101	jockey	13	630	8.5	16.0	12.2	1.0	666	chr2L	13481435	intron	CG42784 +	chr2L	13481768	intron	CG42784 +	chr2L	13482101	intron	CG42784 +	chr2L_13_13480001	chr2L_13480001	RAL-340_100b
505	chr2L	13522258	13522283	chr2L	13527589	13527608	Transpac	11	5328	27.5	32.0	29.8	0.4	5350	chr2L	13522258	intron	B4 -	chr2L	13524933	intron	B4 -	chr2L	13527608	intron	B4 -	chr2L_11_13520001	chr2L_13520001	RAL-340_100b
506	chr2L	13560378	13560419	chr2L	13565224	13565265	F-element	24	4845	9.5	7.5	8.5	2.5	4887	chr2L	13560378	intron	kuz +	chr2L	13562822	intron	kuz +	chr2L	13565265	intron	kuz +	chr2L_24_13560001	chr2L_13560001	RAL-340_100b
518	chr2L	13761784	13761838	chr2L	13762920	13762923	Doc	31	1133	12.0	14.5	13.2	2.2	1139	chr2L	13761784	intron	TM9SF4 +	chr2L	13762354	intron	TM9SF4 +	chr2L	13762923	intron	TM9SF4 +	chr2L_31_13760001	chr2L_13760001	RAL-340_100b
521	chr2L	13853070	13853114	chr2L	13862239	13862275	roo	16	9173	8.5	8.5	8.5	1.7	9205	chr2L	13853070	intron	CenG1A +	chr2L	13857672	intron	CenG1A +	chr2L	13862275	intron	CenG1A +	chr2L_16_13855001	chr2L_13855001	RAL-340_100b
544	chr2L	14803854	14803909	chr2L	14809082	14809137	copia	37	5225	8.5	7.0	7.8	4.2	5283	chr2L	14803854	intergenic	not near genes	chr2L	14806496	intergenic	not near genes	chr2L	14809137	intergenic	not near genes	chr2L_37_14805001	chr2L_14805001	RAL-340_100b
547	chr2L	14984356	14984372	chr2L	14991983	14991993	opus	6	7626	20.0	21.5	20.8	0.3	7637	chr2L	14984356	intron	mol -	chr2L	14988174	intron	mol -	chr2L	14991993	intron	mol -	chr2L_6_14985001	chr2L_14985001	RAL-340_100b
564	chr2L	15446025	15446072	chr2L	15453519	15453566	blood	13	7493	6.5	2.0	4.2	2.5	7541	chr2L	15446025	intergenic	not near genes	chr2L	15449796	intergenic	not near genes	chr2L	15453566	intergenic	not near genes	chr2L_13_15445001	chr2L_15445001	RAL-340_100b
567	chr2L	15586386	15586438	chr2L	15593463	15593515	297	14	7074	3.0	11.5	7.2	1.7	7129	chr2L	15586386	intergenic	not near genes	chr2L	15589950	intergenic	not near genes	chr2L	15593515	intergenic	not near genes	chr2L_14_15585001	chr2L_15585001	RAL-340_100b
570	chr2L	15826869	15826892	chr2L	15829288	15829311	Tabor	14	2419	1.5	10.5	6.0	2.0	2442	chr2L	15826869	intergenic	not near genes	chr2L	15828090	intergenic	not near genes	chr2L	15829311	intergenic	not near genes	chr2L_14_15825001	chr2L_15825001	RAL-340_100b
574	chr2L	15956007	15956048	chr2L	15957496	15957519	hobo	8	1481	8.5	9.5	9.0	0.8	1512	chr2L	15956007	intron	beat-Ib -	chr2L	15956763	intron	beat-Ib -	chr2L	15957519	intron	beat-Ib -	chr2L_8_15955001	chr2L_15955001	RAL-340_100b
585	chr2L	16071771	16071771	chr2L	16217660	16217661	copia	221	145889	22.5	70.5	46.5	4.7	145890	chr2L	16071771	intron	beat-Ia +	chr2L	16144716	intergenic	not near genes	chr2L	16217661	intergenic	not near genes	chr2L_221_16140001	chr2L_16140001	RAL-340_100b
587	chr2L	16141142	16141194	chr2L	16146374	16146426	copia	15	5232	4.5	10.5	7.5	1.8	5284	chr2L	16141142	intergenic	not near genes	chr2L	16143784	intergenic	not near genes	chr2L	16146426	intergenic	not near genes	chr2L_15_16140001	chr2L_16140001	RAL-340_100b
588	chr2L	16153729	16153749	chr2L	16160822	16160842	297	7	7093	12.5	4.0	8.2	0.8	7113	chr2L	16153729	intergenic	not near genes	chr2L	16157286	intergenic	not near genes	chr2L	16160842	intergenic	not near genes	chr2L_7_16155001	chr2L_16155001	RAL-340_100b
597	chr2L	16071768	16071772	chr2L	16217660	16217660	copia	151	145889	23.0	70.5	46.8	3.2	145892	chr2L	16071768	intron	beat-Ia +	chr2L	16144714	intergenic	not near genes	chr2L	16217660	intergenic	not near genes	chr2L_151_16140001	chr2L_16140001	RAL-340_100b
599	chr2L	16280234	16280284	chr2L	16281430	16281480	1360	39	1195	14.5	17.0	15.8	2.3	1246	chr2L	16280234	intron	crp -	chr2L	16280857	intron	crp -	chr2L	16281480	intron	crp -	chr2L_39_16280001	chr2L_16280001	RAL-340_100b
610	chr2L	16511941	16511996	chr2L	16519080	16519090	HMS-Beagle	15	7134	5.5	13.0	9.2	1.5	7149	chr2L	16511941	intron	CG5953 -	chr2L	16515516	intron	CG5953 -	chr2L	16519090	intron	CG5953 -	chr2L_15_16515001	chr2L_16515001	RAL-340_100b
622	chr2L	16958083	16958134	chr2L	16962896	16962947	Doc	21	4812	3.5	7.5	5.5	3.2	4864	chr2L	16958083	intergenic	not near genes	chr2L	16960515	intergenic	not near genes	chr2L	16962947	intergenic	not near genes	chr2L_21_16960001	chr2L_16960001	RAL-340_100b
628	chr2L	17167541	17167596	chr2L	17167807	17167857	pogo	29	258	4.0	7.0	5.5	4.5	316	chr2L	17167541	intron,intron	CG34106 +,beat-IIIa +	chr2L	17167699	intron,intron	CG34106 +,beat-IIIa +	chr2L	17167857	intron,intron	CG34106 +,beat-IIIa +	chr2L_29_17165001	chr2L_17165001	RAL-340_100b
631	chr2L	17199139	17199179	chr2L	17200631	17200671	hobo	10	1491	11.5	5.0	8.2	1.1	1532	chr2L	17199139	intron	beat-IIIc -	chr2L	17199905	intron	beat-IIIc -	chr2L	17200671	intron	beat-IIIc -	chr2L_10_17195001	chr2L_17195001	RAL-340_100b
634	chr2L	17273174	17273187	chr2L	17277982	17277986	F-element	8	4807	13.5	12.5	13.0	0.6	4812	chr2L	17273174	intergenic	not near genes	chr2L	17275580	intergenic	not near genes	chr2L	17277986	intergenic	not near genes	chr2L_8_17275001	chr2L_17275001	RAL-340_100b
635	chr2L	17273190	17273199	chr2L	17277977	17278007	F-element	7	4803	11.0	9.5	10.2	0.6	4817	chr2L	17273190	intergenic	not near genes	chr2L	17275598	intergenic	not near genes	chr2L	17278007	intergenic	not near genes	chr2L_7_17275001	chr2L_17275001	RAL-340_100b
636	chr2L	17273203	17273222	chr2L	17277971	17278029	F-element	13	4802	5.5	7.5	6.5	1.7	4826	chr2L	17273203	intergenic	not near genes	chr2L	17275616	intergenic	not near genes	chr2L	17278029	intergenic	not near genes	chr2L_13_17275001	chr2L_17275001	RAL-340_100b
644	chr2L	17335516	17335524	chr2L	17336715	17336723	1360	5	1199	8.0	12.5	10.2	0.4	1207	chr2L	17335516	intergenic	not near genes	chr2L	17336120	intergenic	not near genes	chr2L	17336723	intergenic	not near genes	chr2L_5_17335001	chr2L_17335001	RAL-340_100b
651	chr2L	17432019	17432037	chr2L	17432130	17432148	1360	9	122	0.0	7.5	3.8	1.9	129	chr2L	17432019	intron	Dif -	chr2L	17432084	intron	Dif -	chr2L	17432148	intron	Dif -	chr2L_9_17430001	chr2L_17430001	RAL-340_100b
656	chr2L	17687493	17687522	chr2L	17692263	17692292	F-element	11	4770	10.0	4.5	7.2	1.3	4799	chr2L	17687493	intron	CadN -	chr2L	17689892	intron	CadN -	chr2L	17692292	intron	CadN -	chr2L_11_17685001	chr2L_17685001	RAL-340_100b
658	chr2L	17727845	17727860	chr2L	17729337	17729352	hobo	10	1491	26.5	25.0	25.8	0.4	1507	chr2L	17727845	intron	CadN -	chr2L	17728598	intron	CadN -	chr2L	17729352	intron	CadN -	chr2L_10_17725001	chr2L_17725001	RAL-340_100b
659	chr2L	17819894	17819940	chr2L	17825123	17825139	copia	7	5223	9.5	11.0	10.2	0.6	5245	chr2L	17819894	intron	CadN2 -	chr2L	17822516	intron	CadN2 -	chr2L	17825139	intron	CadN2 -	chr2L_7_17820001	chr2L_17820001	RAL-340_100b
666	chr2L	17951930	17951975	chr2L	17953417	17953467	hobo	20	1492	3.0	4.5	3.8	4.2	1537	chr2L	17951930	intergenic	CR44398 -,CR44397 -	chr2L	17952698	intergenic	not near genes	chr2L	17953467	intergenic	not near genes	chr2L_20_17950001	chr2L_17950001	RAL-340_100b
667	chr2L	18051858	18051894	chr2L	18061030	18061066	roo	7	9172	19.5	12.5	16.0	0.4	9208	chr2L	18051858	intron	rdo +	chr2L	18056462	intron	rdo +	chr2L	18061066	intron	rdo +	chr2L_7_18055001	chr2L_18055001	RAL-340_100b
678	chr2L	18408004	18408059	chr2L	18412813	18412876	Doc	14	4808	7.0	0.5	3.8	2.9	4872	chr2L	18408004	intergenic	not near genes	chr2L	18410440	intergenic	not near genes	chr2L	18412876	intergenic	not near genes	chr2L_14_18410001	chr2L_18410001	RAL-340_100b
703	chr2L	19147344	19147368	chr2L	19154404	19154422	297	12	7059	12.5	11.5	12.0	0.9	7078	chr2L	19147344	intron	brat +	chr2L	19150883	intron	brat +	chr2L	19154422	intron	brat +	chr2L_12_19150001	chr2L_19150001	RAL-340_100b
704	chr2L	19147371	19147384	chr2L	19154431	19154438	297	6	7056	7.5	14.5	11.0	0.5	7067	chr2L	19147371	intron	brat +	chr2L	19150904	intron	brat +	chr2L	19154438	intron	brat +	chr2L_6_19150001	chr2L_19150001	RAL-340_100b
705	chr2L	19147385	19147400	chr2L	19154422	19154460	297	7	7054	5.5	14.0	9.8	0.6	7075	chr2L	19147385	intron	brat +	chr2L	19150922	intron	brat +	chr2L	19154460	intron	brat +	chr2L_7_19150001	chr2L_19150001	RAL-340_100b
708	chr2L	19345007	19345045	chr2L	19357229	19357239	blood	21	12227	6.0	13.5	9.8	1.9	12232	chr2L	19345007	intron	dnt -	chr2L	19351123	intron	dnt -	chr2L	19357239	intron	dnt -	chr2L_21_19350001	chr2L_19350001	RAL-340_100b
721	chr2L	19620072	19620110	chr2L	19621086	19621111	jockey	28	1011	24.5	17.5	21.0	1.3	1039	chr2L	19620072	intron	Lar +	chr2L	19620592	intron	Lar +	chr2L	19621111	intron	Lar +	chr2L_28_19620001	chr2L_19620001	RAL-340_100b
722	chr2L	19620111	19620119	chr2L	19621080	19621127	jockey	12	999	21.5	14.5	18.0	0.6	1016	chr2L	19620111	intron	Lar +	chr2L	19620619	intron	Lar +	chr2L	19621127	intron	Lar +	chr2L_12_19620001	chr2L_19620001	RAL-340_100b
723	chr2L	19620120	19620132	chr2L	19621079	19621138	jockey	15	997	15.5	14.5	15.0	0.9	1018	chr2L	19620120	intron	Lar +	chr2L	19620629	intron	Lar +	chr2L	19621138	intron	Lar +	chr2L_15_19620001	chr2L_19620001	RAL-340_100b
725	chr2L	19652551	19652596	chr2L	19674004	19674040	opus	10	21454	8.0	11.0	9.5	1.0	21489	chr2L	19652551	intron	Lar +	chr2L	19663296	intron	Lar +	chr2L	19674040	intron	Lar +	chr2L_10_19660001	chr2L_19660001	RAL-340_100b
728	chr2L	19703515	19703545	chr2L	19712676	19712706	roo	6	9161	12.0	6.5	9.2	0.6	9191	chr2L	19703515	intron	Lar +	chr2L	19708110	intron	Lar +	chr2L	19712706	intron	Lar +	chr2L_6_19705001	chr2L_19705001	RAL-340_100b
729	chr2L	19703546	19703570	chr2L	19712672	19712708	roo	16	9145	5.5	6.0	5.8	2.4	9162	chr2L	19703546	intron	Lar +	chr2L	19708127	intron	Lar +	chr2L	19712708	intron	Lar +	chr2L_16_19705001	chr2L_19705001	RAL-340_100b
731	chr2L	19737345	19737388	chr2L	19740831	19740865	1360	18	3483	4.0	8.5	6.2	2.5	3520	chr2L	19737345	intergenic	Nf-YB +	chr2L	19739105	intergenic	not near genes	chr2L	19740865	intergenic	not near genes	chr2L_18_19735001	chr2L_19735001	RAL-340_100b
732	chr2L	19762788	19762838	chr2L	19763049	19763105	pogo	20	264	4.5	6.5	5.5	3.1	317	chr2L	19762788	exon	fbp -	chr2L	19762946	intron	fbp -	chr2L	19763105	intron	fbp -	chr2L_20_19760001	chr2L_19760001	RAL-340_100b
741	chr2L	20005855	20005905	chr2L	20010956	20010971	flea	23	5095	5.0	23.0	14.0	1.5	5116	chr2L	20005855	intron	CG43861 -	chr2L	20008413	intron	CG43861 -	chr2L	20010971	intron	CG43861 -	chr2L_23_20005001	chr2L_20005001	RAL-340_100b
748	chr2L	20272094	20272145	chr2L	20282830	20282869	copia	17	10734	10.0	7.0	8.5	1.8	10775	chr2L	20272094	intergenic	not near genes	chr2L	20277482	intergenic	not near genes	chr2L	20282869	intergenic	not near genes	chr2L_17_20275001	chr2L_20275001	RAL-340_100b
753	chr2L	20303161	20303183	chr2L	20310654	20310676	blood	5	7493	2.5	10.5	6.5	0.7	7515	chr2L	20303161	intergenic	not near genes	chr2L	20306918	intergenic	not near genes	chr2L	20310676	intergenic	not near genes	chr2L_5_20305001	chr2L_20305001	RAL-340_100b
758	chr2L	20372206	20372243	chr2L	20372471	20372509	pogo	23	264	1.0	15.5	8.2	2.5	303	chr2L	20372206	intergenic	Ugt37a1 -	chr2L	20372358	intergenic	Ugt37a1 -	chr2L	20372509	exon	Ugt37a1 -	chr2L_23_20370001	chr2L_20370001	RAL-340_100b
766	chr2L	20568637	20568650	chr2L	20569052	20569065	X-element	6	415	11.0	5.0	8.0	0.7	428	chr2L	20568637	intron	CR45347 +	chr2L	20568851	intron	CR45347 +	chr2L	20569065	intron	CR45347 +	chr2L_6_20565001	chr2L_20565001	RAL-340_100b
767	chr2L	20568662	20568683	chr2L	20569055	20569098	X-element	10	411	4.5	6.0	5.2	1.6	436	chr2L	20568662	intron	CR45347 +	chr2L	20568880	intron	CR45347 +	chr2L	20569098	intron	CR45347 +	chr2L_10_20565001	chr2L_20565001	RAL-340_100b
768	chr2L	20576195	20576240	chr2L	20583688	20583733	blood	16	7490	13.0	12.5	12.8	1.2	7538	chr2L	20576195	intergenic	CR45347 +	chr2L	20579964	intergenic	not near genes	chr2L	20583733	3` UTR	CR44909 -	chr2L_16_20575001	chr2L_20575001	RAL-340_100b
777	chr2L	20835813	20835838	chr2L	20836523	20836580	Quasimodo	15	730	5.0	7.0	6.0	2.1	767	chr2L	20835813	5` UTR	Oseg5 -	chr2L	20836196	intergenic	Oseg5 -,Spn38F -	chr2L	20836580	intergenic	Spn38F -	chr2L_15_20835001	chr2L_20835001	RAL-340_100b
778	chr2L	20891519	20891546	chr2L	20896635	20896672	jockey	10	5123	10.5	5.5	8.0	1.1	5153	chr2L	20891519	intron,intron	CG43739 -,sky -	chr2L	20894096	intron,intron	CG43739 -,sky -	chr2L	20896672	intron,intron	CG43739 -,sky -	chr2L_10_20890001	chr2L_20890001	RAL-340_100b
780	chr2L	20976628	20976670	chr2L	20981468	20981510	X-element	10	4839	15.0	11.0	13.0	0.7	4882	chr2L	20976628	intron	CG42238 -	chr2L	20979069	intron	CG42238 -	chr2L	20981510	intron	CG42238 -	chr2L_10_20975001	chr2L_20975001	RAL-340_100b
781	chr2L	21020252	21020286	chr2L	21023954	21023983	NOF	11	3701	13.0	13.5	13.2	0.8	3731	chr2L	21020252	intron	CG42238 -	chr2L	21022118	intron	CG42238 -	chr2L	21023983	intron	CG42238 -	chr2L_11_21020001	chr2L_21020001	RAL-340_100b
782	chr2L	21020287	21020306	chr2L	21023949	21024006	NOF	13	3694	6.0	12.0	9.0	1.3	3719	chr2L	21020287	intron	CG42238 -	chr2L	21022146	intron	CG42238 -	chr2L	21024006	intron	CG42238 -	chr2L_13_21020001	chr2L_21020001	RAL-340_100b
784	chr2L	21041134	21041163	chr2L	21049394	21049437	Tirant	13	8279	5.5	6.0	5.8	1.9	8303	chr2L	21041134	intron	CG42238 -	chr2L	21045286	intron	CG42238 -	chr2L	21049437	intron	CG42238 -	chr2L_13_21045001	chr2L_21045001	RAL-340_100b
793	chr2L	21347535	21347571	chr2L	21355025	21355068	blood	15	7496	8.0	5.0	6.5	2.0	7533	chr2L	21347535	intron	Tsp39D +	chr2L	21351302	intron	Tsp39D +	chr2L	21355068	intron	Tsp39D +	chr2L_15_21350001	chr2L_21350001	RAL-340_100b
795	chr2L	21597033	21597063	chr2L	21604771	21604814	roo	18	7761	6.5	9.0	7.8	2.0	7781	chr2L	21597033	intergenic	not near genes	chr2L	21600924	intergenic	not near genes	chr2L	21604814	intergenic	not near genes	chr2L_18_21600001	chr2L_21600001	RAL-340_100b
796	chr2L	21653168	21653221	chr2L	21656496	21656550	invader4	17	3325	8.0	11.5	9.8	1.6	3382	chr2L	21653168	intergenic	not near genes	chr2L	21654859	intergenic	not near genes	chr2L	21656550	intergenic	not near genes	chr2L_17_21650001	chr2L_21650001	RAL-340_100b
797	chr2L	21691802	21691841	chr2L	21698297	21698325	Burdock	13	6493	10.0	0.5	5.2	2.1	6523	chr2L	21691802	intron	CG31619 +	chr2L	21695064	intron	CG31619 +	chr2L	21698325	intron	CG31619 +	chr2L_13_21695001	chr2L_21695001	RAL-340_100b
805	chr2L	21981661	21981713	chr2L	21990851	21990887	roo	30	9185	8.5	7.5	8.0	3.3	9226	chr2L	21981661	exon	CG2528 -	chr2L	21986274	intron	CG2528 -	chr2L	21990887	exon	CG2528 -	chr2L_30_21985001	chr2L_21985001	RAL-340_100b
817	chr2L	22258595	22258623	chr2L	22260744	22260772	G6	20	2148	28.0	15.5	21.8	0.9	2177	chr2L	22258595	intergenic	Tif-IA +	chr2L	22259684	intergenic	not near genes	chr2L	22260772	intergenic	not near genes	chr2L_20_22255001	chr2L_22255001	RAL-340_100b
818	chr2L	22258626	22258647	chr2L	22260737	22260778	G6	18	2142	16.0	13.0	14.5	1.2	2152	chr2L	22258626	intergenic	Tif-IA +	chr2L	22259702	intergenic	not near genes	chr2L	22260778	intergenic	not near genes	chr2L_18_22255001	chr2L_22255001	RAL-340_100b
822	chr2L	22548922	22548938	chr2L	22550161	22550188	1360	7	1247	0.0	14.0	7.0	0.9	1266	chr2L	22548922	intergenic	CG17490 +	chr2L	22549555	intergenic	not near genes	chr2L	22550188	intergenic	CG17493 +	chr2L_7_22545001	chr2L_22545001	RAL-340_100b
824	chr2L	22581948	22581985	chr2L	22583762	22583783	S-element	15	1812	9.0	1.0	5.0	2.5	1835	chr2L	22581948	intron	CG17494 +	chr2L	22582866	intron	CG17494 +	chr2L	22583783	intron	CG17494 +	chr2L_15_22580001	chr2L_22580001	RAL-340_100b
825	chr2L	22716421	22716479	chr2L	22717847	22717905	INE-1	15	1426	9.5	6.5	8.0	1.7	1484	chr2L	22716421	intron	CG40006 -	chr2L	22717163	intron	CG40006 -	chr2L	22717905	intron	CG40006 -	chr2L_15_22715001	chr2L_22715001	RAL-340_100b
826	chr2L	22776400	22776436	chr2L	22778214	22778250	S-element	14	1814	8.0	9.5	8.8	1.4	1850	chr2L	22776400	intergenic	not near genes	chr2L	22777325	intergenic	not near genes	chr2L	22778250	intergenic	not near genes	chr2L_14_22775001	chr2L_22775001	RAL-340_100b
827	chr2L	22776443	22776451	chr2L	22778209	22778265	S-element	9	1806	5.5	8.0	6.8	1.2	1822	chr2L	22776443	intergenic	not near genes	chr2L	22777354	intergenic	not near genes	chr2L	22778265	intergenic	not near genes	chr2L_9_22775001	chr2L_22775001	RAL-340_100b
832	chr2R	469946	469980	chr2R	473201	473246	F-element	10	3264	6.5	8.0	7.2	1.2	3300	chr2R	469946	intergenic	not near genes	chr2R	471596	intergenic	not near genes	chr2R	473246	intergenic	not near genes	chr2R_10_470001	chr2R_470001	RAL-340_100b
834	chr2R	529316	529343	chr2R	537966	537987	Max-element	8	8646	4.5	8.0	6.2	1.1	8671	chr2R	529316	intron	CG40378 +	chr2R	533652	intron	CG40378 +	chr2R	537987	intron	CG40378 +	chr2R_8_530001	chr2R_530001	RAL-340_100b
835	chr2R	552743	552787	chr2R	553986	553999	1360	7	1236	4.0	6.5	5.2	1.1	1256	chr2R	552743	intron	CG40378 +	chr2R	553371	intron	CG40378 +	chr2R	553999	intron	CG40378 +	chr2R_7_550001	chr2R_550001	RAL-340_100b
837	chr2R	1010401	1010402	chr2R	4297980	4298004	mdg1	4	3287586	104.5	108.5	106.5	0.0	3287603	chr2R	1010401	intergenic	not near genes	chr2R	2654202	intergenic	not near genes	chr2R	4298004	intergenic	not near genes	chr2R_4_2650001	chr2R_2650001	RAL-340_100b
841	chr2R	1516584	1516602	chr2R	1521337	1521355	1731	16	4752	16.5	14.5	15.5	1.0	4771	chr2R	1516584	exon	Maf1 -	chr2R	1518970	intron	Maf1 -	chr2R	1521355	5` UTR	Maf1 -	chr2R_16_1515001	chr2R_1515001	RAL-340_100b
844	chr2R	2110481	2110499	chr2R	2118064	2118082	17.6	7	7582	23.0	8.0	15.5	0.4	7601	chr2R	2110481	intron	CG17684 -	chr2R	2114282	intron	CG17684 -	chr2R	2118082	intron	CG17684 -	chr2R_7_2110001	chr2R_2110001	RAL-340_100b
845	chr2R	2498961	2499016	chr2R	2508133	2508184	roo	24	9169	8.5	4.0	6.2	3.3	9223	chr2R	2498961	intron	MFS17 -	chr2R	2503572	intron	MFS17 -	chr2R	2508184	intron	MFS17 -	chr2R_24_2500001	chr2R_2500001	RAL-340_100b
848	chr2R	2875363	2875386	chr2R	2878897	2878926	HMS-Beagle	4	3538	23.5	20.5	22.0	0.2	3563	chr2R	2875363	intergenic	not near genes	chr2R	2877144	intergenic	not near genes	chr2R	2878926	intergenic	not near genes	chr2R_4_2875001	chr2R_2875001	RAL-340_100b
850	chr2R	3144068	3144110	chr2R	3393371	3393413	Doc	16	249302	35.5	15.5	25.5	0.6	249345	chr2R	3144068	intron	CG42596 +	chr2R	3268740	intergenic	not near genes	chr2R	3393413	intergenic	not near genes	chr2R_16_3265001	chr2R_3265001	RAL-340_100b
852	chr2R	3532599	3532628	chr2R	3536061	3536096	Doc	9	3467	2.5	2.5	2.5	2.6	3497	chr2R	3532599	intergenic	not near genes	chr2R	3534348	intergenic	not near genes	chr2R	3536096	intergenic	not near genes	chr2R_9_3530001	chr2R_3530001	RAL-340_100b
854	chr2R	3927683	3927687	chr2R	4854350	4854366	gypsy10	4	926678	36.5	19.5	28.0	0.1	926683	chr2R	3927683	intron	uex -	chr2R	4391024	intron	Gprk1 -	chr2R	4854366	intergenic	not near genes	chr2R_4_4390001	chr2R_4390001	RAL-340_100b
857	chr2R	4622931	4622962	chr2R	4624114	4624146	1360	6	1181	12.0	11.0	11.5	0.5	1215	chr2R	4622931	intergenic	CR44101 -	chr2R	4623538	intergenic	not near genes	chr2R	4624146	intergenic	not near genes	chr2R_6_4620001	chr2R_4620001	RAL-340_100b
858	chr2R	4622970	4622987	chr2R	4624109	4624116	1360	8	1148	6.0	10.5	8.2	0.9	1146	chr2R	4622970	intergenic	CR44101 -	chr2R	4623543	intergenic	not near genes	chr2R	4624116	intergenic	not near genes	chr2R_8_4620001	chr2R_4620001	RAL-340_100b
859	chr2R	4624619	4624669	chr2R	4626549	4626599	Bica	28	1926	9.0	16.0	12.5	2.1	1980	chr2R	4624619	intergenic	not near genes	chr2R	4625609	intergenic	not near genes	chr2R	4626599	intergenic	not near genes	chr2R_28_4625001	chr2R_4625001	RAL-340_100b
862	chr2R	4750318	4750330	chr2R	4751500	4751508	1360	5	1181	19.0	11.5	15.2	0.3	1190	chr2R	4750318	intron	conu +	chr2R	4750913	intron	conu +	chr2R	4751508	intron	conu +	chr2R_5_4750001	chr2R_4750001	RAL-340_100b
863	chr2R	4750331	4750376	chr2R	4751498	4751558	1360	24	1176	10.5	10.5	10.5	2.1	1227	chr2R	4750331	intron	conu +	chr2R	4750944	intron	conu +	chr2R	4751558	intron	conu +	chr2R_24_4750001	chr2R_4750001	RAL-340_100b
865	chr2R	4838847	4838900	chr2R	4840395	4840448	transib2	14	1542	9.5	12.0	10.8	1.2	1601	chr2R	4838847	intergenic	not near genes	chr2R	4839648	intergenic	not near genes	chr2R	4840448	intergenic	not near genes	chr2R_14_4835001	chr2R_4835001	RAL-340_100b
866	chr2R	4870728	4870743	chr2R	4871263	4871279	R1A1-element	9	536	9.5	11.0	10.2	0.8	551	chr2R	4870728	intergenic	not near genes	chr2R	4871004	intergenic	not near genes	chr2R	4871279	intergenic	not near genes	chr2R_9_4870001	chr2R_4870001	RAL-340_100b
867	chr2R	4878657	4878704	chr2R	4887666	4887715	X-element	12	9006	6.0	12.0	9.0	1.2	9058	chr2R	4878657	intergenic	not near genes	chr2R	4883186	intergenic	not near genes	chr2R	4887715	intergenic	not near genes	chr2R_12_4880001	chr2R_4880001	RAL-340_100b
887	chr2R	5417971	5418026	chr2R	5420626	5420626	Burdock	10	2646	6.5	5.0	5.8	1.5	2655	chr2R	5417971	intron	laccase2 +	chr2R	5419298	intron	laccase2 +	chr2R	5420626	intron	laccase2 +	chr2R_10_5415001	chr2R_5415001	RAL-340_100b
889	chr2R	5543200	5543211	chr2R	5547309	5547320	invader1	4	4108	0.5	16.0	8.2	0.4	4120	chr2R	5543200	intron	CG30438 +	chr2R	5545260	intron	CG30438 +	chr2R	5547320	intron	CG30438 +	chr2R_4_5545001	chr2R_5545001	RAL-340_100b
900	chr2R	5869254	5869304	chr2R	5874355	5874405	flea	21	5099	18.0	12.0	15.0	1.3	5151	chr2R	5869254	intergenic	not near genes	chr2R	5871830	intergenic	not near genes	chr2R	5874405	intergenic	not near genes	chr2R_21_5870001	chr2R_5870001	RAL-340_100b
901	chr2R	5902142	5902192	chr2R	5909726	5909776	17.6	4	7584	7.0	7.0	7.0	0.5	7634	chr2R	5902142	intron	CG43366 +	chr2R	5905959	intron	CG43366 +	chr2R	5909776	intron	CG43366 +	chr2R_4_5905001	chr2R_5905001	RAL-340_100b
902	chr2R	5939652	5939664	chr2R	5940874	5940886	INE-1	5	1221	10.5	22.5	16.5	0.3	1234	chr2R	5939652	intergenic	not near genes	chr2R	5940269	intergenic	not near genes	chr2R	5940886	intergenic	not near genes	chr2R_5_5940001	chr2R_5940001	RAL-340_100b
909	chr2R	6096718	6096739	chr2R	6101929	6101952	BS	5	5213	22.5	20.5	21.5	0.2	5234	chr2R	6096718	intron	EcR -	chr2R	6099335	intron	EcR -	chr2R	6101952	intron	EcR -	chr2R_5_6095001	chr2R_6095001	RAL-340_100b
910	chr2R	6096750	6096751	chr2R	6101910	6101920	BS	5	5186	17.5	13.5	15.5	0.3	5170	chr2R	6096750	intron	EcR -	chr2R	6099335	intron	EcR -	chr2R	6101920	intron	EcR -	chr2R_5_6095001	chr2R_6095001	RAL-340_100b
918	chr2R	6494510	6494554	chr2R	6499297	6499301	F-element	16	4780	3.5	6.0	4.8	2.8	4791	chr2R	6494510	intergenic	not near genes	chr2R	6496906	intergenic	not near genes	chr2R	6499301	intergenic	not near genes	chr2R_16_6495001	chr2R_6495001	RAL-340_100b
923	chr2R	6579751	6579799	chr2R	6584859	6584910	flea	8	5110	2.0	2.0	2.0	2.7	5159	chr2R	6579751	intron	jing +	chr2R	6582330	intron	jing +	chr2R	6584910	intron	jing +	chr2R_8_6580001	chr2R_6580001	RAL-340_100b
934	chr2R	6952149	6952168	chr2R	6959754	6959773	opus	11	7604	19.5	13.5	16.5	0.6	7624	chr2R	6952149	intron,intron,exon	mim -,CheB42c -,ppk25 +	chr2R	6955961	intron,intron	mim -,CheB42c -	chr2R	6959773	intron,intron	mim -,CheB42c -	chr2R_11_6955001	chr2R_6955001	RAL-340_100b
935	chr2R	6952169	6952177	chr2R	6959744	6959782	opus	4	7598	15.5	10.0	12.8	0.3	7613	chr2R	6952169	intron,intron	mim -,CheB42c -	chr2R	6955976	intron,intron	mim -,CheB42c -	chr2R	6959782	intron,intron	mim -,CheB42c -	chr2R_4_6955001	chr2R_6955001	RAL-340_100b
938	chr2R	7139945	7139955	chr2R	7141432	7141472	hopper2	5	1501	2.5	15.0	8.8	0.5	1527	chr2R	7139945	intergenic	not near genes	chr2R	7140708	intergenic	not near genes	chr2R	7141472	intergenic	not near genes	chr2R_5_7140001	chr2R_7140001	RAL-340_100b
939	chr2R	7196552	7196564	chr2R	7201349	7201364	F-element	8	4798	16.5	11.0	13.8	0.5	4812	chr2R	7196552	intron	pk +	chr2R	7198958	intron	pk +	chr2R	7201364	intron	pk +	chr2R_8_7195001	chr2R_7195001	RAL-340_100b
940	chr2R	7196565	7196590	chr2R	7201345	7201390	F-element	16	4792	7.0	9.5	8.2	1.7	4825	chr2R	7196565	intron	pk +	chr2R	7198978	intron	pk +	chr2R	7201390	intron	pk +	chr2R_16_7195001	chr2R_7195001	RAL-340_100b
941	chr2R	7209860	7209865	chr2R	7217646	7217651	roo	4	7786	16.0	19.5	17.8	0.2	7791	chr2R	7209860	intron	pk +	chr2R	7213756	intron	pk +	chr2R	7217651	intron	pk +	chr2R_4_7210001	chr2R_7210001	RAL-340_100b
942	chr2R	7209868	7209874	chr2R	7217596	7217660	roo	7	7777	11.5	0.5	6.0	1.0	7792	chr2R	7209868	intron	pk +	chr2R	7213764	intron	pk +	chr2R	7217660	intron	pk +	chr2R_7_7210001	chr2R_7210001	RAL-340_100b
943	chr2R	7235798	7235807	chr2R	7240915	7240924	jockey	7	5116	20.0	8.0	14.0	0.5	5126	chr2R	7235798	intergenic	not near genes	chr2R	7238361	intergenic	not near genes	chr2R	7240924	intergenic	not near genes	chr2R_7_7235001	chr2R_7235001	RAL-340_100b
944	chr2R	7235808	7235832	chr2R	7240914	7240949	jockey	8	5113	14.0	7.0	10.5	0.7	5141	chr2R	7235808	intergenic	not near genes	chr2R	7238378	intergenic	not near genes	chr2R	7240949	intergenic	not near genes	chr2R_8_7235001	chr2R_7235001	RAL-340_100b
945	chr2R	7235833	7235849	chr2R	7240910	7240966	jockey	16	5101	8.0	6.5	7.2	2.0	5133	chr2R	7235833	intergenic	not near genes	chr2R	7238400	intergenic	not near genes	chr2R	7240966	intergenic	not near genes	chr2R_16_7235001	chr2R_7235001	RAL-340_100b
951	chr2R	7434873	7434883	chr2R	7439199	7439209	Juan	7	4324	37.0	17.5	27.2	0.2	4336	chr2R	7434873	intergenic	so +	chr2R	7437041	intergenic	not near genes	chr2R	7439209	intergenic	not near genes	chr2R_7_7435001	chr2R_7435001	RAL-340_100b
952	chr2R	7434886	7434911	chr2R	7439192	7439237	Juan	23	4322	22.0	15.5	18.8	1.2	4351	chr2R	7434886	intergenic	so +	chr2R	7437062	intergenic	not near genes	chr2R	7439237	intergenic	not near genes	chr2R_23_7435001	chr2R_7435001	RAL-340_100b
954	chr2R	7608390	7608432	chr2R	7613618	7613660	I-element	17	5226	6.5	17.5	12.0	1.3	5270	chr2R	7608390	intron	CG1358 -	chr2R	7611025	intron	CG1358 -	chr2R	7613660	intron	CG1358 -	chr2R_17_7610001	chr2R_7610001	RAL-340_100b
957	chr2R	7815657	7815701	chr2R	7822144	7822178	Burdock	15	6492	8.0	15.0	11.5	1.2	6521	chr2R	7815657	intergenic	CG1882 +	chr2R	7818918	intergenic	not near genes	chr2R	7822178	3` UTR	cathD -	chr2R_15_7815001	chr2R_7815001	RAL-340_100b
958	chr2R	7862239	7862251	chr2R	7867350	7867362	flea	4	5111	28.0	10.5	19.2	0.2	5123	chr2R	7862239	intron	Dgk -	chr2R	7864800	intron	Dgk -	chr2R	7867362	intron	Dgk -	chr2R_4_7860001	chr2R_7860001	RAL-340_100b
959	chr2R	7869167	7869219	chr2R	7873978	7873986	Doc	20	4804	7.5	9.0	8.2	2.2	4819	chr2R	7869167	intron	Dgk -	chr2R	7871576	intron	Dgk -	chr2R	7873986	intron	Dgk -	chr2R_20_7870001	chr2R_7870001	RAL-340_100b
985	chr2R	8330842	8330889	chr2R	8331352	8331400	roo	11	509	9.5	6.5	8.0	1.2	558	chr2R	8330842	intron	pdm3 +	chr2R	8331121	intron	pdm3 +	chr2R	8331400	intron	pdm3 +	chr2R_11_8330001	chr2R_8330001	RAL-340_100b
989	chr2R	8398189	8398200	chr2R	8402995	8403006	Doc	5	4804	30.0	10.5	20.2	0.2	4817	chr2R	8398189	intron	CG2121 -	chr2R	8400598	intron	CG2121 -	chr2R	8403006	intron	CG2121 -	chr2R_5_8400001	chr2R_8400001	RAL-340_100b
990	chr2R	8398209	8398239	chr2R	8403004	8403045	Doc	14	4802	11.5	11.5	11.5	1.1	4836	chr2R	8398209	intron	CG2121 -	chr2R	8400627	intron	CG2121 -	chr2R	8403045	intron	CG2121 -	chr2R_14_8400001	chr2R_8400001	RAL-340_100b
997	chr2R	8722752	8722762	chr2R	8723006	8723028	pogo	6	261	18.0	8.5	13.2	0.4	276	chr2R	8722752	intron	CG14767 -	chr2R	8722890	intron	CG14767 -	chr2R	8723028	intron	CG14767 -	chr2R_6_8720001	chr2R_8720001	RAL-340_100b
998	chr2R	8722763	8722791	chr2R	8723003	8723057	pogo	14	254	14.0	8.5	11.2	1.1	294	chr2R	8722763	intron	CG14767 -	chr2R	8722910	intron	CG14767 -	chr2R	8723057	intron	CG14767 -	chr2R_14_8720001	chr2R_8720001	RAL-340_100b
1000	chr2R	8777926	8777929	chr2R	8784155	8784158	diver	5	6228	5.5	12.0	8.8	0.5	6232	chr2R	8777926	intergenic	not near genes	chr2R	8781042	intergenic	not near genes	chr2R	8784158	intergenic	not near genes	chr2R_5_8780001	chr2R_8780001	RAL-340_100b
1001	chr2R	8777930	8777941	chr2R	8784153	8784162	diver	9	6227	4.0	11.5	7.8	1.0	6232	chr2R	8777930	intergenic	not near genes	chr2R	8781046	intergenic	not near genes	chr2R	8784162	intergenic	not near genes	chr2R_9_8780001	chr2R_8780001	RAL-340_100b
1016	chr2R	9151277	9151316	chr2R	9157772	9157811	Burdock	21	6490	15.0	7.5	11.2	1.7	6534	chr2R	9151277	exon	CG30345 +	chr2R	9154544	intergenic	not near genes	chr2R	9157811	intergenic	CG8008 -	chr2R_21_9150001	chr2R_9150001	RAL-340_100b
1017	chr2R	9212676	9212690	chr2R	9213180	9213201	roo	12	510	25.0	12.0	18.5	0.6	525	chr2R	9212676	intergenic	CR45309 +	chr2R	9212938	intergenic	CR45309 +	chr2R	9213201	5` UTR	CR45309 +	chr2R_12_9210001	chr2R_9210001	RAL-340_100b
1018	chr2R	9212692	9212725	chr2R	9213178	9213188	roo	19	502	10.5	12.0	11.2	1.6	496	chr2R	9212692	intergenic	CR45309 +	chr2R	9212940	intergenic	CR45309 +	chr2R	9213188	5` UTR	CR45309 +	chr2R_19_9210001	chr2R_9210001	RAL-340_100b
1020	chr2R	9480067	9480110	chr2R	9490623	9490640	roo	6	10551	7.0	9.0	8.0	0.7	10573	chr2R	9480067	intergenic	not near genes	chr2R	9485354	intergenic	not near genes	chr2R	9490640	intergenic	not near genes	chr2R_6_9485001	chr2R_9485001	RAL-340_100b
1025	chr2R	9726593	9726601	chr2R	9734169	9734177	17.6	6	7576	25.5	6.0	15.8	0.4	7584	chr2R	9726593	intron	sqa -	chr2R	9730385	intron	sqa -	chr2R	9734177	intron	sqa -	chr2R_6_9730001	chr2R_9730001	RAL-340_100b
1026	chr2R	9726603	9726640	chr2R	9734164	9734216	17.6	15	7574	9.5	5.0	7.2	1.8	7613	chr2R	9726603	intron	sqa -	chr2R	9730410	intron	sqa -	chr2R	9734216	intron	sqa -	chr2R_15_9730001	chr2R_9730001	RAL-340_100b
1032	chr2R	9871015	9871069	chr2R	9871526	9871580	roo	22	509	5.5	12.5	9.0	2.2	565	chr2R	9871015	intron	cbx -	chr2R	9871298	intron	cbx -	chr2R	9871580	intron,5` UTR	cbx -,CG18446 +	chr2R_22_9870001	chr2R_9870001	RAL-340_100b
1036	chr2R	9945433	9945464	chr2R	9945633	9945685	BS	31	217	12.5	5.5	9.0	3.1	252	chr2R	9945433	intron	Mef2 -	chr2R	9945559	intron	Mef2 -	chr2R	9945685	intron	Mef2 -	chr2R_31_9945001	chr2R_9945001	RAL-340_100b
1044	chr2R	10176853	10176907	chr2R	10186048	10186102	roo	17	9193	4.0	5.5	4.8	2.9	9249	chr2R	10176853	intron	KCNQ -	chr2R	10181478	intron	KCNQ -	chr2R	10186102	intron	KCNQ -	chr2R_17_10180001	chr2R_10180001	RAL-340_100b
1066	chr2R	10585574	10585590	chr2R	10594152	10594167	Tirant	11	8598	3.5	7.5	5.5	1.7	8593	chr2R	10585574	intron	psq +	chr2R	10589870	intron	psq +	chr2R	10594167	intron	psq +	chr2R_11_10585001	chr2R_10585001	RAL-340_100b
1069	chr2R	10622332	10622379	chr2R	10637122	10637138	mdg1	14	14782	5.0	12.0	8.5	1.5	14806	chr2R	10622332	intron	CG11883 +	chr2R	10629735	intron	CG11883 +	chr2R	10637138	intron	CG11883 +	chr2R_14_10625001	chr2R_10625001	RAL-340_100b
1079	chr2R	10948022	10948042	chr2R	10955581	10955618	17.6	18	7569	30.5	21.0	25.8	0.7	7596	chr2R	10948022	intergenic	not near genes	chr2R	10951820	intergenic	not near genes	chr2R	10955618	intergenic	not near genes	chr2R_18_10950001	chr2R_10950001	RAL-340_100b
1080	chr2R	10948049	10948060	chr2R	10955580	10955626	17.6	7	7558	15.5	20.0	17.8	0.4	7577	chr2R	10948049	intergenic	not near genes	chr2R	10951838	intergenic	not near genes	chr2R	10955626	intergenic	not near genes	chr2R_7_10950001	chr2R_10950001	RAL-340_100b
1083	chr2R	10979649	10979686	chr2R	10980133	10980166	297	12	487	8.5	22.0	15.2	0.7	517	chr2R	10979649	intergenic	not near genes	chr2R	10979908	intergenic	not near genes	chr2R	10980166	intergenic	not near genes	chr2R_12_10975001	chr2R_10975001	RAL-340_100b
1084	chr2R	11009792	11009847	chr2R	11018991	11019039	roo	32	9189	5.5	6.0	5.8	4.7	9247	chr2R	11009792	intron	luna -	chr2R	11014416	intron	luna -	chr2R	11019039	intron	luna -	chr2R_32_11010001	chr2R_11010001	RAL-340_100b
1085	chr2R	11019860	11019895	chr2R	11024951	11024986	jockey	10	5088	8.0	11.5	9.8	0.9	5126	chr2R	11019860	intron	luna -	chr2R	11022423	intron	luna -	chr2R	11024986	intron	luna -	chr2R_10_11020001	chr2R_11020001	RAL-340_100b
1086	chr2R	11019897	11019907	chr2R	11024947	11024970	jockey	7	5073	6.0	11.0	8.5	0.7	5073	chr2R	11019897	intron	luna -	chr2R	11022434	intron	luna -	chr2R	11024970	intron	luna -	chr2R_7_11020001	chr2R_11020001	RAL-340_100b
1092	chr2R	11134096	11134139	chr2R	11134362	11134405	pogo	12	261	1.5	6.0	3.8	2.5	309	chr2R	11134096	intergenic	not near genes	chr2R	11134250	intergenic	not near genes	chr2R	11134405	intergenic	not near genes	chr2R_12_11130001	chr2R_11130001	RAL-340_100b
1094	chr2R	11207807	11207838	chr2R	11208012	11208056	BS	13	215	14.5	16.5	15.5	0.8	249	chr2R	11207807	intron	shn +	chr2R	11207932	intron	shn +	chr2R	11208056	intron	shn +	chr2R_13_11205001	chr2R_11205001	RAL-340_100b
1095	chr2R	11297620	11297632	chr2R	11301950	11301978	flea	6	4343	16.0	25.0	20.5	0.3	4358	chr2R	11297620	intergenic	CG42336 -	chr2R	11299799	intergenic	not near genes	chr2R	11301978	5` UTR	CG7741 +	chr2R_6_11295001	chr2R_11295001	RAL-340_100b
1096	chr2R	11297634	11297641	chr2R	11301939	11301987	flea	7	4339	14.0	20.0	17.0	0.4	4353	chr2R	11297634	intergenic	CG42336 -	chr2R	11299810	intergenic	not near genes	chr2R	11301987	5` UTR	CG7741 +	chr2R_7_11295001	chr2R_11295001	RAL-340_100b
1101	chr2R	11415504	11415550	chr2R	11418666	11418704	opus	10	3161	5.0	7.0	6.0	1.4	3200	chr2R	11415504	intron	Drip -	chr2R	11417104	intron	Drip -	chr2R	11418704	intron	Drip -	chr2R_10_11415001	chr2R_11415001	RAL-340_100b
1103	chr2R	1320201	1320201	chr2R	11463556	11463556	invader1	6	10143355	112.5	44.0	78.2	0.1	10143355	chr2R	1320201	intergenic	not near genes	chr2R	6391878	intergenic	not near genes	chr2R	11463556	3` UTR	E(Pc) +	chr2R_6_6390001	chr2R_6390001	RAL-340_100b
1104	chr2R	11472624	11472678	chr2R	11473846	11473900	pogo	33	1220	13.0	6.0	9.5	3.1	1276	chr2R	11472624	intergenic	not near genes	chr2R	11473262	intergenic	not near genes	chr2R	11473900	intergenic	not near genes	chr2R_33_11470001	chr2R_11470001	RAL-340_100b
1138	chr2R	12481146	12481170	chr2R	12482944	12482954	roo	15	1813	6.0	9.5	7.8	1.7	1808	chr2R	12481146	exon	Dh44-R2 +	chr2R	12482050	intron	Dh44-R2 +	chr2R	12482954	intron	Dh44-R2 +	chr2R_15_12480001	chr2R_12480001	RAL-340_100b
1139	chr2R	12501680	12501691	chr2R	12503851	12503877	Rt1c	5	2180	17.5	14.5	16.0	0.3	2197	chr2R	12501680	intron	fdl -	chr2R	12502778	intron	fdl -	chr2R	12503877	intron	fdl -	chr2R_5_12500001	chr2R_12500001	RAL-340_100b
1140	chr2R	12501706	12501709	chr2R	12503882	12503896	Rt1c	4	2184	11.5	21.5	16.5	0.2	2190	chr2R	12501706	intron	fdl -	chr2R	12502801	intron	fdl -	chr2R	12503896	intron	fdl -	chr2R_4_12500001	chr2R_12500001	RAL-340_100b
1141	chr2R	12501714	12501721	chr2R	12503857	12503863	Rt1c	12	2166	7.0	17.5	12.2	0.9	2149	chr2R	12501714	intron	fdl -	chr2R	12502788	intron	fdl -	chr2R	12503863	intron	fdl -	chr2R_12_12500001	chr2R_12500001	RAL-340_100b
1142	chr2R	12501722	12501728	chr2R	12503854	12503879	Rt1c	11	2156	5.5	16.0	10.8	0.9	2157	chr2R	12501722	intron	fdl -	chr2R	12502800	intron	fdl -	chr2R	12503879	intron	fdl -	chr2R_11_12500001	chr2R_12500001	RAL-340_100b
1147	chr2R	12707497	12707525	chr2R	12715888	12715916	roo	9	8391	11.5	15.0	13.2	0.6	8419	chr2R	12707497	intron	CG42663 +	chr2R	12711706	intron	CG42663 +	chr2R	12715916	intron	CG42663 +	chr2R_9_12710001	chr2R_12710001	RAL-340_100b
1148	chr2R	12707529	12707548	chr2R	12715883	12715939	roo	14	8381	8.0	13.0	10.5	1.2	8410	chr2R	12707529	intron	CG42663 +	chr2R	12711734	intron	CG42663 +	chr2R	12715939	intron	CG42663 +	chr2R_14_12710001	chr2R_12710001	RAL-340_100b
1151	chr2R	12789270	12789282	chr2R	12797656	12797664	roo	5	8386	26.0	11.0	18.5	0.3	8394	chr2R	12789270	intron,3` UTR	sca +,CR45137 -	chr2R	12793467	intron,intron	sca +,CR45137 -	chr2R	12797664	intron,3` UTR	sca +,CR45137 -	chr2R_5_12790001	chr2R_12790001	RAL-340_100b
1152	chr2R	12789284	12789328	chr2R	12797655	12797705	roo	21	8377	6.5	10.0	8.2	2.3	8421	chr2R	12789284	intron,3` UTR	sca +,CR45137 -	chr2R	12793494	intron,intron	sca +,CR45137 -	chr2R	12797705	intron,3` UTR	sca +,CR45137 -	chr2R_21_12790001	chr2R_12790001	RAL-340_100b
1153	chr2R	12819426	12819479	chr2R	12824520	12824563	jockey	39	5090	11.0	28.5	19.8	1.9	5137	chr2R	12819426	intergenic	not near genes	chr2R	12821994	intergenic	not near genes	chr2R	12824563	intergenic	not near genes	chr2R_39_12820001	chr2R_12820001	RAL-340_100b
1159	chr2R	13136820	13136865	chr2R	13141643	13141682	Doc	33	4820	9.5	19.5	14.5	2.1	4862	chr2R	13136820	exon	Cap-G +	chr2R	13139251	intron	Cap-G +	chr2R	13141682	intron	Cap-G +	chr2R_33_13135001	chr2R_13135001	RAL-340_100b
1179	chr2R	13580488	13580526	chr2R	13580848	13580901	jockey	13	370	3.0	5.5	4.2	2.5	413	chr2R	13580488	3` UTR	CG6191 -	chr2R	13580694	3` UTR,3` UTR	CG6191 -,CG45088 -	chr2R	13580901	3` UTR,3` UTR	CG6191 -,CG45088 -	chr2R_13_13580001	chr2R_13580001	RAL-340_100b
1184	chr2R	13728111	13728156	chr2R	13735793	13735838	opus	7	7676	4.5	3.5	4.0	1.4	7727	chr2R	13728111	intron	fas +	chr2R	13731974	intron	fas +	chr2R	13735838	intron	fas +	chr2R_7_13730001	chr2R_13730001	RAL-340_100b
1193	chr2R	13905598	13905627	chr2R	13907583	13907634	Rt1a	11	2000	10.5	7.5	9.0	1.1	2036	chr2R	13905598	intron	shot -	chr2R	13906616	intron	shot -	chr2R	13907634	intron	shot -	chr2R_11_13905001	chr2R_13905001	RAL-340_100b
1209	chr2R	14394209	14394220	chr2R	14399023	14399030	Doc	5	4813	17.0	11.0	14.0	0.3	4821	chr2R	14394209	intergenic	not near genes	chr2R	14396620	intergenic	not near genes	chr2R	14399030	intergenic	not near genes	chr2R_5_14395001	chr2R_14395001	RAL-340_100b
1211	chr2R	14467281	14467327	chr2R	14476464	14476505	roo	21	9178	5.5	11.5	8.5	2.2	9224	chr2R	14467281	intergenic	not near genes	chr2R	14471893	intergenic	not near genes	chr2R	14476505	5` UTR	CR44462 +	chr2R_21_14470001	chr2R_14470001	RAL-340_100b
1212	chr2R	14497369	14497419	chr2R	14498559	14498609	1360	25	1188	4.5	8.5	6.5	3.3	1240	chr2R	14497369	3` UTR	Cpsf160 -	chr2R	14497989	intron	Cpsf160 -	chr2R	14498609	3` UTR	Cpsf160 -	chr2R_25_14495001	chr2R_14495001	RAL-340_100b
1225	chr2R	14889189	14889217	chr2R	14897822	14897845	Max-element	13	8630	25.5	0.0	12.8	0.9	8656	chr2R	14889189	intergenic	Cyp6a8 -	chr2R	14893517	intergenic	not near genes	chr2R	14897845	intergenic	not near genes	chr2R_13_14890001	chr2R_14890001	RAL-340_100b
1233	chr2R	15004707	15004734	chr2R	15005061	15005088	jockey	4	354	13.0	7.5	10.2	0.4	381	chr2R	15004707	intergenic	not near genes	chr2R	15004898	intergenic	not near genes	chr2R	15005088	intergenic	not near genes	chr2R_4_15000001	chr2R_15000001	RAL-340_100b
1234	chr2R	15004744	15004750	chr2R	15005082	15005103	jockey	6	351	7.0	9.5	8.2	0.7	359	chr2R	15004744	intergenic	not near genes	chr2R	15004924	intergenic	not near genes	chr2R	15005103	intergenic	not near genes	chr2R_6_15000001	chr2R_15000001	RAL-340_100b
1235	chr2R	15015432	15015490	chr2R	15022881	15022935	mdg1	12	7442	7.5	5.5	6.5	1.6	7503	chr2R	15015432	intron	hbs +	chr2R	15019184	intron	hbs +	chr2R	15022935	intron	hbs +	chr2R_12_15015001	chr2R_15015001	RAL-340_100b
1238	chr2R	15119297	15119319	chr2R	15127803	15127825	Tirant	10	8504	14.5	22.0	18.2	0.5	8528	chr2R	15119297	intron	chn +	chr2R	15123561	intron	chn +	chr2R	15127825	intron	chn +	chr2R_10_15120001	chr2R_15120001	RAL-340_100b
1239	chr2R	15119320	15119345	chr2R	15127800	15127851	Tirant	20	8501	5.5	19.0	12.2	1.5	8531	chr2R	15119320	intron	chn +	chr2R	15123586	intron	chn +	chr2R	15127851	intron	chn +	chr2R_20_15120001	chr2R_15120001	RAL-340_100b
1240	chr2R	15119346	15119349	chr2R	15127799	15127844	Tirant	6	8492	5.5	17.0	11.2	0.5	8498	chr2R	15119346	intron	chn +	chr2R	15123595	intron	chn +	chr2R	15127844	intron	chn +	chr2R_6_15120001	chr2R_15120001	RAL-340_100b
1265	chr2R	16061707	16061716	chr2R	16064365	16064371	Burdock	7	2658	31.5	11.0	21.2	0.3	2664	chr2R	16061707	intergenic	not near genes	chr2R	16063039	intergenic	not near genes	chr2R	16064371	intergenic	not near genes	chr2R_7_16060001	chr2R_16060001	RAL-340_100b
1288	chr2R	17147220	17147234	chr2R	17152276	17152290	jockey	5	5056	23.5	11.5	17.5	0.3	5070	chr2R	17147220	intergenic	not near genes	chr2R	17149755	intergenic	not near genes	chr2R	17152290	intergenic	not near genes	chr2R_5_17145001	chr2R_17145001	RAL-340_100b
1289	chr2R	17147236	17147267	chr2R	17152274	17152317	jockey	16	5054	9.0	11.0	10.0	1.5	5081	chr2R	17147236	intergenic	not near genes	chr2R	17149776	intergenic	not near genes	chr2R	17152317	intergenic	not near genes	chr2R_16_17145001	chr2R_17145001	RAL-340_100b
1292	chr2R	17236483	17236509	chr2R	17241712	17241732	copia	30	5228	19.0	9.0	14.0	2.0	5249	chr2R	17236483	intron	mbl +	chr2R	17239108	intron	mbl +	chr2R	17241732	intron	mbl +	chr2R_30_17235001	chr2R_17235001	RAL-340_100b
1293	chr2R	17236513	17236525	chr2R	17241722	17241754	copia	11	5222	15.0	13.0	14.0	0.7	5241	chr2R	17236513	intron	mbl +	chr2R	17239134	intron	mbl +	chr2R	17241754	intron	mbl +	chr2R_11_17235001	chr2R_17235001	RAL-340_100b
1294	chr2R	17236526	17236534	chr2R	17241717	17241763	copia	9	5218	14.5	11.0	12.8	0.7	5237	chr2R	17236526	intron	mbl +	chr2R	17239144	intron	mbl +	chr2R	17241763	intron	mbl +	chr2R_9_17235001	chr2R_17235001	RAL-340_100b
1300	chr2R	17485897	17485950	chr2R	17490692	17490737	F-element	14	4792	9.5	5.0	7.2	1.7	4840	chr2R	17485897	5` UTR,intron	CG43110 -,NT5E-2 +	chr2R	17488317	intron	NT5E-2 +	chr2R	17490737	intron	NT5E-2 +	chr2R_14_17485001	chr2R_17485001	RAL-340_100b
1310	chr2R	17782345	17782391	chr2R	17783573	17783619	pogo	6	1228	6.5	7.0	6.8	0.8	1274	chr2R	17782345	intergenic	CG33981 -,fab1 -	chr2R	17782982	intergenic	not near genes	chr2R	17783619	intergenic	mir-31a -	chr2R_6_17780001	chr2R_17780001	RAL-340_100b
1311	chr2R	17784001	17784055	chr2R	17784267	17784320	pogo	20	261	8.0	13.0	10.5	1.7	319	chr2R	17784001	intergenic	mir-31a -	chr2R	17784160	intergenic	mir-31a -	chr2R	17784320	intergenic	mir-31a -	chr2R_20_17780001	chr2R_17780001	RAL-340_100b
1322	chr2R	18111662	18111713	chr2R	18115555	18115606	F-element	16	3886	10.5	11.0	10.8	1.4	3944	chr2R	18111662	intergenic	not near genes	chr2R	18113634	intergenic	not near genes	chr2R	18115606	intergenic	not near genes	chr2R_16_18110001	chr2R_18110001	RAL-340_100b
1327	chr2R	18358375	18358416	chr2R	18372612	18372653	roo	19	14229	10.0	13.5	11.8	1.5	14278	chr2R	18358375	intergenic	not near genes	chr2R	18365514	intergenic	not near genes	chr2R	18372653	intergenic	not near genes	chr2R_19_18365001	chr2R_18365001	RAL-340_100b
1336	chr2R	18487820	18487848	chr2R	18495290	18495343	blood	12	7477	1.5	6.5	4.0	2.4	7523	chr2R	18487820	intron	CG30116 -	chr2R	18491582	intron	CG30116 -	chr2R	18495343	intron	CG30116 -	chr2R_12_18490001	chr2R_18490001	RAL-340_100b
1337	chr2R	18575774	18575831	chr2R	18581983	18582018	3S18	26	6203	3.0	9.5	6.2	3.6	6244	chr2R	18575774	intron	GEFmeso -	chr2R	18578896	intron	GEFmeso -	chr2R	18582018	intron	GEFmeso -	chr2R_26_18575001	chr2R_18575001	RAL-340_100b
1338	chr2R	18590843	18590868	chr2R	18600020	18600045	roo	12	9175	15.5	10.0	12.8	0.9	9202	chr2R	18590843	intron	GEFmeso -	chr2R	18595444	intron	GEFmeso -	chr2R	18600045	intron	GEFmeso -	chr2R_12_18595001	chr2R_18595001	RAL-340_100b
1339	chr2R	18590872	18590879	chr2R	18600019	18600056	roo	6	9172	13.5	10.0	11.8	0.5	9184	chr2R	18590872	intron	GEFmeso -	chr2R	18595464	intron	GEFmeso -	chr2R	18600056	intron	GEFmeso -	chr2R_6_18595001	chr2R_18595001	RAL-340_100b
1340	chr2R	18590881	18590899	chr2R	18600018	18600037	roo	9	9159	7.0	9.5	8.2	1.0	9156	chr2R	18590881	intron	GEFmeso -	chr2R	18595459	intron	GEFmeso -	chr2R	18600037	intron	GEFmeso -	chr2R_9_18595001	chr2R_18595001	RAL-340_100b
1367	chr2R	19715834	19715851	chr2R	19723328	19723345	blood	11	7492	12.0	10.5	11.2	0.9	7511	chr2R	19715834	intergenic	not near genes	chr2R	19719590	intergenic	not near genes	chr2R	19723345	intergenic	not near genes	chr2R_11_19715001	chr2R_19715001	RAL-340_100b
1369	chr2R	19776573	19776621	chr2R	19779921	19779969	jockey	19	3342	10.0	7.0	8.5	2.0	3396	chr2R	19776573	intergenic	not near genes	chr2R	19778271	intergenic	not near genes	chr2R	19779969	intergenic	not near genes	chr2R_19_19775001	chr2R_19775001	RAL-340_100b
1372	chr2R	19914836	19914874	chr2R	19922257	19922311	mdg1	8	7430	4.5	8.5	6.5	1.1	7475	chr2R	19914836	intergenic	not near genes	chr2R	19918574	intergenic	not near genes	chr2R	19922311	intergenic	not near genes	chr2R_8_19915001	chr2R_19915001	RAL-340_100b
1374	chr2R	19957408	19957462	chr2R	19962632	19962689	copia	26	5223	11.0	5.0	8.0	2.9	5281	chr2R	19957408	intergenic	CG44623 +	chr2R	19960048	intergenic	not near genes	chr2R	19962689	intergenic	not near genes	chr2R_26_19960001	chr2R_19960001	RAL-340_100b
1378	chr2R	20069208	20069251	chr2R	20071872	20071914	opus	13	2662	5.5	3.5	4.5	2.4	2706	chr2R	20069208	intergenic	not near genes	chr2R	20070561	intergenic	not near genes	chr2R	20071914	intergenic	not near genes	chr2R_13_20070001	chr2R_20070001	RAL-340_100b
1386	chr2R	20368493	20368496	chr2R	20377680	20377684	roo	4	9188	56.5	11.0	33.8	0.1	9191	chr2R	20368493	intergenic	not near genes	chr2R	20373088	intergenic	not near genes	chr2R	20377684	intergenic	not near genes	chr2R_4_20370001	chr2R_20370001	RAL-340_100b
1391	chr2R	20739422	20739477	chr2R	20744215	20744232	F-element	21	4787	7.0	10.0	8.5	2.2	4810	chr2R	20739422	intron	dpr +	chr2R	20741827	intron	dpr +	chr2R	20744232	intron	dpr +	chr2R_21_20740001	chr2R_20740001	RAL-340_100b
1395	chr2R	20783287	20783333	chr2R	20788084	20788098	F-element	12	4792	11.0	6.0	8.5	1.3	4811	chr2R	20783287	intergenic	not near genes	chr2R	20785692	intergenic	not near genes	chr2R	20788098	intergenic	CG43666 -	chr2R_12_20785001	chr2R_20785001	RAL-340_100b
1405	chr2R	21151093	21151143	chr2R	21153751	21153801	opus	19	2657	8.0	7.0	7.5	2.2	2708	chr2R	21151093	intron	CG30389 -	chr2R	21152447	intron	CG30389 -	chr2R	21153801	intron	CG30389 -	chr2R_19_21150001	chr2R_21150001	RAL-340_100b
1427	chr2R	21738249	21738311	chr2R	21747435	21747450	roo	12	9177	1.5	9.0	5.2	1.9	9201	chr2R	21738249	intergenic	not near genes	chr2R	21742850	intergenic	not near genes	chr2R	21747450	intergenic	not near genes	chr2R_12_21740001	chr2R_21740001	RAL-340_100b
1428	chr2R	21753066	21753096	chr2R	21753575	21753597	roo	18	506	12.0	11.0	11.5	1.4	531	chr2R	21753066	intergenic	not near genes	chr2R	21753332	intergenic	not near genes	chr2R	21753597	intergenic	not near genes	chr2R_18_21750001	chr2R_21750001	RAL-340_100b
1429	chr2R	21753098	21753109	chr2R	21753573	21753619	roo	4	493	9.5	11.0	10.2	0.4	521	chr2R	21753098	intergenic	not near genes	chr2R	21753358	intergenic	not near genes	chr2R	21753619	intergenic	not near genes	chr2R_4_21750001	chr2R_21750001	RAL-340_100b
1431	chr2R	21809502	21809557	chr2R	21817767	21817792	roo	26	8259	8.5	11.5	10.0	2.4	8290	chr2R	21809502	intergenic	not near genes	chr2R	21813647	intergenic	not near genes	chr2R	21817792	intergenic	not near genes	chr2R_26_21810001	chr2R_21810001	RAL-340_100b
1451	chr2R	22349677	22349698	chr2R	22351486	22351507	jockey	8	1808	17.5	20.0	18.8	0.4	1830	chr2R	22349677	intron	Liprin-gamma -	chr2R	22350592	intron	Liprin-gamma -	chr2R	22351507	intron	Liprin-gamma -	chr2R_8_22350001	chr2R_22350001	RAL-340_100b
1452	chr2R	22349702	22349721	chr2R	22351476	22351530	jockey	13	1802	11.0	16.0	13.5	0.9	1828	chr2R	22349702	intron	Liprin-gamma -	chr2R	22350616	intron	Liprin-gamma -	chr2R	22351530	intron	Liprin-gamma -	chr2R_13_22350001	chr2R_22350001	RAL-340_100b
1457	chr2R	22525725	22525737	chr2R	22529305	22529317	jockey	7	3579	32.5	24.5	28.5	0.2	3592	chr2R	22525725	intron	px -	chr2R	22527521	intron	px -	chr2R	22529317	intron	px -	chr2R_7_22525001	chr2R_22525001	RAL-340_100b
1458	chr2R	22525739	22525752	chr2R	22529303	22529332	jockey	12	3575	24.0	22.5	23.2	0.5	3593	chr2R	22525739	intron	px -	chr2R	22527536	intron	px -	chr2R	22529332	intron	px -	chr2R_12_22525001	chr2R_22525001	RAL-340_100b
1459	chr2R	22525758	22525760	chr2R	22529333	22529340	jockey	4	3579	19.0	42.5	30.8	0.1	3582	chr2R	22525758	intron	px -	chr2R	22527549	intron	px -	chr2R	22529340	intron	px -	chr2R_4_22525001	chr2R_22525001	RAL-340_100b
1460	chr2R	22525765	22525771	chr2R	22529330	22529351	jockey	9	3578	16.5	42.0	29.2	0.3	3586	chr2R	22525765	intron	px -	chr2R	22527558	intron	px -	chr2R	22529351	intron	px -	chr2R_9_22525001	chr2R_22525001	RAL-340_100b
1461	chr2R	22525774	22525782	chr2R	22529324	22529340	jockey	6	3564	11.5	36.0	23.8	0.2	3566	chr2R	22525774	intron	px -	chr2R	22527557	intron	px -	chr2R	22529340	intron	px -	chr2R_6_22525001	chr2R_22525001	RAL-340_100b
1470	chr2R	22774935	22774993	chr2R	22775379	22775417	jockey	22	442	9.0	9.0	9.0	2.2	482	chr2R	22774935	intron	CG42260 -	chr2R	22775176	intron	CG42260 -	chr2R	22775417	intron	CG42260 -	chr2R_22_22775001	chr2R_22775001	RAL-340_100b
1472	chr2R	22843006	22843048	chr2R	22844993	22845035	flea	10	1986	7.5	10.5	9.0	1.0	2029	chr2R	22843006	intergenic	CG9826 +	chr2R	22844020	intergenic	not near genes	chr2R	22845035	intergenic	not near genes	chr2R_10_22840001	chr2R_22840001	RAL-340_100b
1492	chr2R	23402586	23402642	chr2R	23407687	23407743	flea	11	5093	7.0	9.0	8.0	1.2	5157	chr2R	23402586	intergenic	CG3520 -	chr2R	23405164	intergenic	not near genes	chr2R	23407743	intergenic	not near genes	chr2R_11_23405001	chr2R_23405001	RAL-340_100b
1500	chr2R	23529550	23529607	chr2R	23537149	23537168	412	14	7586	6.5	10.5	8.5	1.5	7618	chr2R	23529550	intron	bw -	chr2R	23533359	intron	bw -	chr2R	23537168	exon	bw -	chr2R_14_23530001	chr2R_23530001	RAL-340_100b
1510	chr2R	23914275	23914314	chr2R	23921924	23921940	412	17	7645	17.0	11.5	14.2	1.1	7665	chr2R	23914275	exon	kcc +	chr2R	23918108	intron	kcc +	chr2R	23921940	intron	kcc +	chr2R_17_23915001	chr2R_23915001	RAL-340_100b
1511	chr2R	23914320	23914332	chr2R	23921922	23921958	412	7	7636	11.0	10.0	10.5	0.6	7638	chr2R	23914320	exon	kcc +	chr2R	23918139	intron	kcc +	chr2R	23921958	intron	kcc +	chr2R_7_23915001	chr2R_23915001	RAL-340_100b
1514	chr2R	24147051	24147097	chr2R	24154647	24154680	412	12	7595	8.5	9.0	8.8	1.2	7629	chr2R	24147051	intron	Dat +	chr2R	24150866	intron	Dat +	chr2R	24154680	intron	Dat +	chr2R_12_24150001	chr2R_24150001	RAL-340_100b
1517	chr2R	24177209	24177258	chr2R	24184719	24184768	412	28	7509	9.5	8.5	9.0	2.8	7559	chr2R	24177209	3` UTR	Nop60B +	chr2R	24180988	intron	Nop60B +	chr2R	24184768	3` UTR	Nop60B +	chr2R_28_24180001	chr2R_24180001	RAL-340_100b
1522	chr2R	24353405	24353461	chr2R	24361792	24361796	roo	23	8378	3.5	13.0	8.2	2.5	8391	chr2R	24353405	intron,intron	bs +,CR44811 -	chr2R	24357600	intron,intron	bs +,CR44811 -	chr2R	24361796	intron,intron	bs +,CR44811 -	chr2R_23_24355001	chr2R_24355001	RAL-340_100b
1534	chr2R	24647564	24647616	chr2R	24655146	24655198	412	38	7578	17.0	14.5	15.8	2.3	7634	chr2R	24647564	intergenic	not near genes	chr2R	24651381	intergenic	not near genes	chr2R	24655198	intergenic	not near genes	chr2R_38_24650001	chr2R_24650001	RAL-340_100b
1536	chr2R	24727864	24727914	chr2R	24735397	24735447	mdg1	20	7526	6.5	16.5	11.5	1.6	7583	chr2R	24727864	intron	Mid1 -	chr2R	24731656	intron	Mid1 -	chr2R	24735447	intron	Mid1 -	chr2R_20_24730001	chr2R_24730001	RAL-340_100b
1538	chr2R	24763586	24763592	chr2R	24765587	24765587	G2	5	2000	56.0	17.5	36.8	0.1	2001	chr2R	24763586	exon	CG3894 +	chr2R	24764586	intron	CG3894 +	chr2R	24765587	intron	CG3894 +	chr2R_5_24760001	chr2R_24760001	RAL-340_100b
1539	chr2R	24763595	24763633	chr2R	24765586	24765598	G2	39	1998	24.0	17.0	20.5	1.8	2003	chr2R	24763595	exon	CG3894 +	chr2R	24764596	intron	CG3894 +	chr2R	24765598	exon	CG3894 +	chr2R_39_24760001	chr2R_24760001	RAL-340_100b
1540	chr2R	24763635	24763644	chr2R	24765584	24765644	G2	11	1992	16.5	16.0	16.2	0.6	2009	chr2R	24763635	exon	CG3894 +	chr2R	24764640	intron	CG3894 +	chr2R	24765644	exon	CG3894 +	chr2R_11_24760001	chr2R_24760001	RAL-340_100b
1546	chr2R	25141637	25141681	chr2R	25159341	25159396	roo	19	17711	8.5	12.0	10.2	1.7	17759	chr2R	25141637	intergenic	not near genes	chr2R	25150516	intergenic	not near genes	chr2R	25159396	intergenic	not near genes	chr2R_19_25150001	chr2R_25150001	RAL-340_100b
1554	chr3L	110186	110244	chr3L	119378	119427	roo	18	9187	8.0	15.0	11.5	1.4	9241	chr3L	110186	intergenic	not near genes	chr3L	114806	intergenic	not near genes	chr3L	119427	intergenic	not near genes	chr3L_18_110001	chr3L_110001	RAL-340_100b
1558	chr3L	402664	402674	chr3L	409742	409749	297	9	7076	49.0	13.5	31.2	0.3	7085	chr3L	402664	intergenic	not near genes	chr3L	406206	intergenic	not near genes	chr3L	409749	intergenic	not near genes	chr3L_9_405001	chr3L_405001	RAL-340_100b
1559	chr3L	402675	402718	chr3L	409740	409766	297	32	7070	21.5	13.0	17.2	1.8	7091	chr3L	402675	intergenic	not near genes	chr3L	406220	intergenic	not near genes	chr3L	409766	intergenic	not near genes	chr3L_32_405001	chr3L_405001	RAL-340_100b
1573	chr3L	789892	789902	chr3L	790402	790406	roo	6	509	13.0	8.0	10.5	0.5	514	chr3L	789892	intergenic	not near genes	chr3L	790149	intergenic	not near genes	chr3L	790406	intergenic	not near genes	chr3L_6_790001	chr3L_790001	RAL-340_100b
1574	chr3L	789903	789946	chr3L	790397	790456	roo	14	504	6.5	7.0	6.8	1.8	553	chr3L	789903	intergenic	not near genes	chr3L	790180	intergenic	not near genes	chr3L	790456	intergenic	not near genes	chr3L_14_790001	chr3L_790001	RAL-340_100b
1575	chr3L	857975	858030	chr3L	866481	866490	Tirant	13	8496	5.0	9.5	7.2	1.6	8515	chr3L	857975	intergenic	not near genes	chr3L	862232	intergenic	not near genes	chr3L	866490	intergenic	CG12502 +	chr3L_13_860001	chr3L_860001	RAL-340_100b
1576	chr3L	925161	925205	chr3L	932606	932656	mdg1	17	7447	4.5	11.5	8.0	1.9	7495	chr3L	925161	intron	Glut1 +	chr3L	928908	intron	Glut1 +	chr3L	932656	intron	Glut1 +	chr3L_17_925001	chr3L_925001	RAL-340_100b
1577	chr3L	939751	939778	chr3L	940897	940920	jockey	21	1145	21.0	11.0	16.0	1.2	1169	chr3L	939751	intron	Glut1 +	chr3L	940336	intron	Glut1 +	chr3L	940920	intron	Glut1 +	chr3L_21_940001	chr3L_940001	RAL-340_100b
1578	chr3L	939780	939798	chr3L	940893	940925	jockey	9	1132	22.0	10.0	16.0	0.5	1145	chr3L	939780	intron	Glut1 +	chr3L	940352	intron	Glut1 +	chr3L	940925	intron	Glut1 +	chr3L_9_940001	chr3L_940001	RAL-340_100b
1582	chr3L	1047330	1047385	chr3L	1055163	1055182	412	12	7820	3.5	8.0	5.8	1.8	7852	chr3L	1047330	intron	bab1 -	chr3L	1051256	intron	bab1 -	chr3L	1055182	intron	bab1 -	chr3L_12_1050001	chr3L_1050001	RAL-340_100b
1587	chr3L	1154119	1154138	chr3L	1163288	1163313	roo	19	9171	12.5	7.5	10.0	1.7	9194	chr3L	1154119	intron	bab2 -	chr3L	1158716	intron	bab2 -	chr3L	1163313	intron	bab2 -	chr3L_19_1155001	chr3L_1155001	RAL-340_100b
1588	chr3L	1154147	1154161	chr3L	1163278	1163336	roo	12	9162	6.0	5.0	5.5	1.8	9189	chr3L	1154147	intron	bab2 -	chr3L	1158742	intron	bab2 -	chr3L	1163336	intron	bab2 -	chr3L_12_1155001	chr3L_1155001	RAL-340_100b
1590	chr3L	1219569	1219620	chr3L	1227327	1227378	412	20	7749	8.5	11.0	9.8	1.9	7809	chr3L	1219569	intron	mwh +	chr3L	1223474	intron	mwh +	chr3L	1227378	intron	mwh +	chr3L_20_1220001	chr3L_1220001	RAL-340_100b
1603	chr3L	1424759	1424773	chr3L	1430022	1430027	Rt1a	4	5262	16.0	25.5	20.8	0.2	5268	chr3L	1424759	intron	Ptp61F -	chr3L	1427393	intron	Ptp61F -	chr3L	1430027	intron	Ptp61F -	chr3L_4_1425001	chr3L_1425001	RAL-340_100b
1606	chr3L	1485740	1485743	chr3L	1486914	1486933	1360	5	1184	24.5	69.5	47.0	0.1	1193	chr3L	1485740	intron	stet -	chr3L	1486336	intron	stet -	chr3L	1486933	intron	stet -	chr3L_5_1485001	chr3L_1485001	RAL-340_100b
1609	chr3L	1505975	1506031	chr3L	1513597	1513600	17.6	12	7616	9.5	7.0	8.2	1.3	7625	chr3L	1505975	intron,intron	Psa +,cue -	chr3L	1509788	intron,intron	Psa +,cue -	chr3L	1513600	intron,intron	Psa +,cue -	chr3L_12_1505001	chr3L_1505001	RAL-340_100b
1615	chr3L	1740850	1740883	chr3L	1741107	1741150	pogo	5	262	7.5	7.5	7.5	0.6	300	chr3L	1740850	intron	Gk +	chr3L	1741000	intron	Gk +	chr3L	1741150	intron	Gk +	chr3L_5_1740001	chr3L_1740001	RAL-340_100b
1625	chr3L	2108230	2108249	chr3L	2113459	2113477	copia	11	5227	8.5	9.5	9.0	1.1	5247	chr3L	2108230	intron	sls -	chr3L	2110854	intron	sls -	chr3L	2113477	intron	sls -	chr3L_11_2110001	chr3L_2110001	RAL-340_100b
1626	chr3L	2108250	2108282	chr3L	2113456	2113511	copia	24	5226	3.0	9.5	6.2	3.3	5261	chr3L	2108250	intron	sls -	chr3L	2110880	intron	sls -	chr3L	2113511	intron	sls -	chr3L_24_2110001	chr3L_2110001	RAL-340_100b
1639	chr3L	2447480	2447506	chr3L	2456661	2456687	roo	15	9179	28.0	15.0	21.5	0.7	9207	chr3L	2447480	intron	CG45186 +	chr3L	2452084	intron	CG45186 +	chr3L	2456687	intron	CG45186 +	chr3L_15_2450001	chr3L_2450001	RAL-340_100b
1640	chr3L	2447513	2447534	chr3L	2456659	2456715	roo	16	9168	11.5	14.5	13.0	1.1	9202	chr3L	2447513	intron	CG45186 +	chr3L	2452114	intron	CG45186 +	chr3L	2456715	intron	CG45186 +	chr3L_16_2450001	chr3L_2450001	RAL-340_100b
1652	chr3L	2751431	2751460	chr3L	2755751	2755780	F-element	4	4320	14.0	8.0	11.0	0.3	4349	chr3L	2751431	intron	Mrtf -	chr3L	2753606	intron	Mrtf -	chr3L	2755780	intron	Mrtf -	chr3L_4_2750001	chr3L_2750001	RAL-340_100b
1657	chr3L	2927814	2927846	chr3L	2936116	2936148	Tirant	29	8299	15.0	19.5	17.2	1.6	8334	chr3L	2927814	intron	Shab +	chr3L	2931981	intron	Shab +	chr3L	2936148	intron	Shab +	chr3L_29_2930001	chr3L_2930001	RAL-340_100b
1658	chr3L	2927849	2927867	chr3L	2936114	2936169	Tirant	21	8296	9.0	18.5	13.8	1.4	8320	chr3L	2927849	intron	Shab +	chr3L	2932009	intron	Shab +	chr3L	2936169	intron	Shab +	chr3L_21_2930001	chr3L_2930001	RAL-340_100b
1660	chr3L	2966700	2966720	chr3L	2974150	2974170	mdg1	4	7450	15.0	0.0	7.5	0.5	7470	chr3L	2966700	intergenic	not near genes	chr3L	2970435	intergenic	not near genes	chr3L	2974170	intergenic	not near genes	chr3L_4_2970001	chr3L_2970001	RAL-340_100b
1664	chr3L	3040316	3040330	chr3L	3042115	3042124	S-element	6	1808	11.0	0.5	5.8	0.9	1808	chr3L	3040316	3` UTR	CG2162 +	chr3L	3041220	intergenic	not near genes	chr3L	3042124	intergenic	Jafrac2 +	chr3L_6_3040001	chr3L_3040001	RAL-340_100b
1666	chr3L	3051719	3051751	chr3L	3051986	3052010	pogo	12	264	16.0	5.5	10.8	1.0	291	chr3L	3051719	3` UTR	CG32485 +	chr3L	3051864	intergenic	CG32485 +	chr3L	3052010	intergenic	CG32485 +	chr3L_12_3050001	chr3L_3050001	RAL-340_100b
1667	chr3L	3061271	3061315	chr3L	3069868	3069915	Tirant	17	8598	8.0	9.0	8.5	1.8	8644	chr3L	3061271	intron	CG32486 -	chr3L	3065593	intron	CG32486 -	chr3L	3069915	intron	CG32486 -	chr3L_17_3065001	chr3L_3065001	RAL-340_100b
1673	chr3L	3281425	3281453	chr3L	3281940	3281974	Doc	7	516	15.0	8.0	11.5	0.6	549	chr3L	3281425	intron	CG12017 +	chr3L	3281700	intron	CG12017 +	chr3L	3281974	intron	CG12017 +	chr3L_7_3280001	chr3L_3280001	RAL-340_100b
1674	chr3L	3281454	3281466	chr3L	3281933	3281986	Doc	16	512	12.5	6.0	9.2	1.6	532	chr3L	3281454	intron	CG12017 +	chr3L	3281720	intron	CG12017 +	chr3L	3281986	intron	CG12017 +	chr3L_16_3280001	chr3L_3280001	RAL-340_100b
1679	chr3L	3475047	3475110	chr3L	3475517	3475523	jockey	41	461	8.5	20.5	14.5	2.6	476	chr3L	3475047	intron	CG42324 +	chr3L	3475285	intron	CG42324 +	chr3L	3475523	intron	CG42324 +	chr3L_41_3475001	chr3L_3475001	RAL-340_100b
1683	chr3L	3601283	3601290	chr3L	3606619	3606626	copia	5	5336	21.0	11.5	16.2	0.3	5343	chr3L	3601283	intron	Eip63E +	chr3L	3603954	intron	Eip63E +	chr3L	3606626	intron	Eip63E +	chr3L_5_3600001	chr3L_3600001	RAL-340_100b
1684	chr3L	3601291	3601330	chr3L	3606618	3606666	copia	20	5334	9.5	11.5	10.5	1.7	5375	chr3L	3601291	intron	Eip63E +	chr3L	3603978	intron	Eip63E +	chr3L	3606666	intron	Eip63E +	chr3L_20_3600001	chr3L_3600001	RAL-340_100b
1694	chr3L	3833712	3833743	chr3L	3833978	3834009	pogo	14	264	13.5	5.5	9.5	1.3	297	chr3L	3833712	intron	enc +	chr3L	3833860	intron	enc +	chr3L	3834009	intron	enc +	chr3L_14_3830001	chr3L_3830001	RAL-340_100b
1699	chr3L	4328744	4328760	chr3L	4336238	4336283	412	7	7517	10.0	9.5	9.8	0.6	7539	chr3L	4328744	intron	Cip4 -	chr3L	4332514	intron	Cip4 -	chr3L	4336283	exon	Cip4 -	chr3L_7_4330001	chr3L_4330001	RAL-340_100b
1719	chr3L	4901105	4901157	chr3L	4907320	4907368	diver	16	6214	7.5	4.5	6.0	2.3	6263	chr3L	4901105	intergenic	CG13704 +	chr3L	4904236	intergenic	not near genes	chr3L	4907368	intergenic	not near genes	chr3L_16_4900001	chr3L_4900001	RAL-340_100b
1720	chr3L	5034133	5034190	chr3L	5043310	5043364	roo	16	9175	8.0	3.0	5.5	2.5	9231	chr3L	5034133	intron	Con -	chr3L	5038748	intron	Con -	chr3L	5043364	intron	Con -	chr3L_16_5035001	chr3L_5035001	RAL-340_100b
1721	chr3L	5045435	5045472	chr3L	5050241	5050278	Doc	18	4806	9.5	9.5	9.5	1.7	4843	chr3L	5045435	intron	Con -	chr3L	5047856	intron	Con -	chr3L	5050278	intron	Con -	chr3L_18_5045001	chr3L_5045001	RAL-340_100b
1728	chr3L	5299150	5299166	chr3L	5306601	5306617	Quasimodo	5	7451	3.5	1.0	2.2	1.6	7467	chr3L	5299150	intergenic	not near genes	chr3L	5302884	intergenic	not near genes	chr3L	5306617	intergenic	not near genes	chr3L_5_5300001	chr3L_5300001	RAL-340_100b
1746	chr3L	5537695	5537722	chr3L	5538062	5538090	jockey	7	364	16.0	7.0	11.5	0.6	395	chr3L	5537695	intergenic	not near genes	chr3L	5537892	intergenic	not near genes	chr3L	5538090	intergenic	CG10625 -	chr3L_7_5535001	chr3L_5535001	RAL-340_100b
1747	chr3L	5537723	5537755	chr3L	5538060	5538109	jockey	9	347	9.0	6.0	7.5	1.1	386	chr3L	5537723	intergenic	not near genes	chr3L	5537916	intergenic	CG10625 -	chr3L	5538109	intergenic	CG10625 -	chr3L_9_5535001	chr3L_5535001	RAL-340_100b
1753	chr3L	5910008	5910059	chr3L	5910274	5910325	pogo	19	265	6.5	8.5	7.5	2.2	317	chr3L	5910008	intron	CG13288 +	chr3L	5910166	intron	CG13288 +	chr3L	5910325	intron	CG13288 +	chr3L_19_5910001	chr3L_5910001	RAL-340_100b
1754	chr3L	5926307	5926339	chr3L	5926511	5926544	BS	23	208	8.0	17.5	12.8	1.7	237	chr3L	5926307	intron	Vap-33B +	chr3L	5926426	intron	Vap-33B +	chr3L	5926544	intron	Vap-33B +	chr3L_23_5925001	chr3L_5925001	RAL-340_100b
1755	chr3L	5926340	5926351	chr3L	5926509	5926509	BS	11	202	6.0	16.5	11.2	0.9	169	chr3L	5926340	intron	Vap-33B +	chr3L	5926424	intron	Vap-33B +	chr3L	5926509	intron	Vap-33B +	chr3L_11_5925001	chr3L_5925001	RAL-340_100b
1758	chr3L	6001666	6001668	chr3L	6004391	6004393	jockey	4	2725	9.0	2.5	5.8	0.6	2727	chr3L	6001666	intron	PVRAP +	chr3L	6003030	intron	PVRAP +	chr3L	6004393	intron	PVRAP +	chr3L_4_6000001	chr3L_6000001	RAL-340_100b
1759	chr3L	6001670	6001710	chr3L	6004385	6004435	jockey	18	2723	5.5	2.5	4.0	3.6	2765	chr3L	6001670	intron	PVRAP +	chr3L	6003052	intron	PVRAP +	chr3L	6004435	intron	PVRAP +	chr3L_18_6000001	chr3L_6000001	RAL-340_100b
1760	chr3L	6040341	6040392	chr3L	6042721	6042773	Doc	30	2376	10.5	5.0	7.8	3.4	2432	chr3L	6040341	intergenic	Jon65Aiv +	chr3L	6041557	intergenic	not near genes	chr3L	6042773	intergenic	not near genes	chr3L_30_6040001	chr3L_6040001	RAL-340_100b
1768	chr3L	6220892	6220945	chr3L	6230069	6230122	roo	28	9174	17.5	11.0	14.2	1.8	9230	chr3L	6220892	5` UTR	pncr008:3L +	chr3L	6225507	intergenic	not near genes	chr3L	6230122	intergenic	not near genes	chr3L_28_6225001	chr3L_6225001	RAL-340_100b
1770	chr3L	6334992	6335010	chr3L	6335488	6335502	297	8	495	23.5	18.0	20.8	0.4	510	chr3L	6334992	intron	CG13300 -	chr3L	6335247	intron	CG13300 -	chr3L	6335502	intron	CG13300 -	chr3L_8_6335001	chr3L_6335001	RAL-340_100b
1771	chr3L	6335024	6335038	chr3L	6335493	6335534	297	8	490	10.0	21.5	15.8	0.5	510	chr3L	6335024	intron	CG13300 -	chr3L	6335279	intron	CG13300 -	chr3L	6335534	intron	CG13300 -	chr3L_8_6335001	chr3L_6335001	RAL-340_100b
1772	chr3L	6405642	6405687	chr3L	6432125	6432170	roo	20	26484	11.5	11.5	11.5	1.6	26528	chr3L	6405642	intron	CG42747 +	chr3L	6418906	intron	CG42747 +	chr3L	6432170	intron	CG42747 +	chr3L_20_6415001	chr3L_6415001	RAL-340_100b
1780	chr3L	6620591	6620598	chr3L	6621056	6621063	Rt1c	5	465	23.0	48.0	35.5	0.1	472	chr3L	6620591	intergenic	not near genes	chr3L	6620827	intergenic	not near genes	chr3L	6621063	intergenic	not near genes	chr3L_5_6620001	chr3L_6620001	RAL-340_100b
1785	chr3L	6781100	6781147	chr3L	6783138	6783138	Doc	12	2032	6.5	11.0	8.8	1.2	2038	chr3L	6781100	intergenic	not near genes	chr3L	6782119	intergenic	not near genes	chr3L	6783138	intergenic	not near genes	chr3L_12_6780001	chr3L_6780001	RAL-340_100b
1788	chr3L	6855912	6855949	chr3L	6860721	6860758	Doc	12	4806	8.5	14.0	11.2	1.0	4846	chr3L	6855912	intergenic	not near genes	chr3L	6858335	intergenic	not near genes	chr3L	6860758	intergenic	not near genes	chr3L_12_6855001	chr3L_6855001	RAL-340_100b
1790	chr3L	6887495	6887527	chr3L	6895012	6895044	roo	11	7516	12.0	10.0	11.0	0.9	7549	chr3L	6887495	intergenic	not near genes	chr3L	6891270	intergenic	not near genes	chr3L	6895044	intergenic	not near genes	chr3L_11_6890001	chr3L_6890001	RAL-340_100b
1791	chr3L	6887536	6887547	chr3L	6895011	6895027	roo	5	7501	8.0	9.5	8.8	0.5	7491	chr3L	6887536	intergenic	not near genes	chr3L	6891282	intergenic	not near genes	chr3L	6895027	intergenic	not near genes	chr3L_5_6890001	chr3L_6890001	RAL-340_100b
1795	chr3L	6994872	6994914	chr3L	6995508	6995550	BS	26	635	3.0	13.5	8.2	2.8	678	chr3L	6994872	intergenic	bin +	chr3L	6995211	intergenic	not near genes	chr3L	6995550	intergenic	not near genes	chr3L_26_6995001	chr3L_6995001	RAL-340_100b
1803	chr3L	7129925	7129979	chr3L	7130142	7130164	BS	6	212	3.0	3.0	3.0	1.5	239	chr3L	7129925	intergenic	CG15829 +	chr3L	7130044	intergenic	CG15829 +	chr3L	7130164	intergenic	CG15829 +	chr3L_6_7130001	chr3L_7130001	RAL-340_100b
1811	chr3L	7377301	7377345	chr3L	7380431	7380475	297	11	3128	2.5	10.5	6.5	1.5	3174	chr3L	7377301	intron	SMSr -	chr3L	7378888	intron	SMSr -	chr3L	7380475	intron	SMSr -	chr3L_11_7375001	chr3L_7375001	RAL-340_100b
1814	chr3L	7498744	7498785	chr3L	7503541	7503587	F-element	19	4797	7.5	8.5	8.0	2.1	4843	chr3L	7498744	5` UTR	CG8539 -	chr3L	7501166	intergenic	not near genes	chr3L	7503587	intergenic	not near genes	chr3L_19_7500001	chr3L_7500001	RAL-340_100b
1823	chr3L	7793691	7793740	chr3L	7800768	7800813	297	24	7074	2.5	11.5	7.0	3.0	7122	chr3L	7793691	intron	CG32369 -	chr3L	7797252	intron	CG32369 -	chr3L	7800813	intron	CG32369 -	chr3L_24_7795001	chr3L_7795001	RAL-340_100b
1829	chr3L	7886504	7886546	chr3L	7889036	7889071	Stalker4	35	2539	3.0	12.5	7.8	4.0	2567	chr3L	7886504	intron	CG32365 +	chr3L	7887788	intron	CG32365 +	chr3L	7889071	intron	CG32365 +	chr3L_35_7885001	chr3L_7885001	RAL-340_100b
1830	chr3L	7916806	7916860	chr3L	7926002	7926003	roo	25	9192	8.5	15.5	12.0	1.9	9197	chr3L	7916806	3` UTR	syd -	chr3L	7921404	intron	syd -	chr3L	7926003	3` UTR	syd -	chr3L_25_7920001	chr3L_7920001	RAL-340_100b
1831	chr3L	7985350	7985395	chr3L	7987704	7987738	NOF	19	2350	7.0	11.0	9.0	1.9	2388	chr3L	7985350	intron	nmo +	chr3L	7986544	intron	nmo +	chr3L	7987738	intron	nmo +	chr3L_19_7985001	chr3L_7985001	RAL-340_100b
1834	chr3L	8019729	8019737	chr3L	8024140	8024163	NOF	8	4427	3.0	9.0	6.0	1.1	4434	chr3L	8019729	intron	nmo +	chr3L	8021946	intron	nmo +	chr3L	8024163	intron	nmo +	chr3L_8_8020001	chr3L_8020001	RAL-340_100b
1843	chr3L	8233568	8233589	chr3L	8238855	8238876	Rt1a	18	5286	18.5	56.0	37.2	0.5	5308	chr3L	8233568	intron	CG7213 -	chr3L	8236222	intron	CG7213 -	chr3L	8238876	intron,intron	CG7213 -,Dscam4 +	chr3L_18_8235001	chr3L_8235001	RAL-340_100b
1851	chr3L	8481750	8481793	chr3L	8490934	8490962	roo	7	9176	8.0	9.0	8.5	0.7	9212	chr3L	8481750	intron	CG43163 -	chr3L	8486356	intron	CG43163 -	chr3L	8490962	intron	CG43163 -	chr3L_7_8485001	chr3L_8485001	RAL-340_100b
1852	chr3L	8498281	8498321	chr3L	8505773	8505812	blood	16	7487	10.5	11.0	10.8	1.4	7531	chr3L	8498281	intron	CG43163 -	chr3L	8502046	intron	CG43163 -	chr3L	8505812	intron	CG43163 -	chr3L_16_8500001	chr3L_8500001	RAL-340_100b
1856	chr3L	8791253	8791265	chr3L	8796698	8796710	I-element	8	5444	17.0	0.5	8.8	0.8	5457	chr3L	8791253	exon	Fhos +	chr3L	8793982	intron	Fhos +	chr3L	8796710	intron	Fhos +	chr3L_8_8790001	chr3L_8790001	RAL-340_100b
1857	chr3L	8791266	8791308	chr3L	8796697	8796752	I-element	8	5436	5.0	0.5	2.8	2.1	5486	chr3L	8791266	exon	Fhos +	chr3L	8794009	intron	Fhos +	chr3L	8796752	intron	Fhos +	chr3L_8_8790001	chr3L_8790001	RAL-340_100b
1868	chr3L	9076913	9076958	chr3L	9084498	9084520	412	13	7583	6.5	8.5	7.5	1.5	7607	chr3L	9076913	exon	Tequila +	chr3L	9080716	intron	Tequila +	chr3L	9084520	exon	Tequila +	chr3L_13_9080001	chr3L_9080001	RAL-340_100b
1873	chr3L	9130541	9130582	chr3L	9134318	9134368	412	18	3782	13.0	8.5	10.8	1.5	3827	chr3L	9130541	intergenic	bol -	chr3L	9132454	intergenic	not near genes	chr3L	9134368	intergenic	Dhpr +	chr3L_18_9130001	chr3L_9130001	RAL-340_100b
1874	chr3L	9164673	9164696	chr3L	9166165	9166181	hobo	21	1489	17.5	2.5	10.0	1.9	1508	chr3L	9164673	intron	Rdl -	chr3L	9165427	intron	Rdl -	chr3L	9166181	intron	Rdl -	chr3L_21_9165001	chr3L_9165001	RAL-340_100b
1875	chr3L	9164698	9164715	chr3L	9166164	9166170	hobo	13	1483	16.5	2.5	9.5	1.2	1472	chr3L	9164698	intron	Rdl -	chr3L	9165434	intron	Rdl -	chr3L	9166170	intron	Rdl -	chr3L_13_9165001	chr3L_9165001	RAL-340_100b
1876	chr3L	9219221	9219240	chr3L	9219918	9219937	jockey	10	693	26.5	13.5	20.0	0.5	716	chr3L	9219221	intergenic	not near genes	chr3L	9219579	intergenic	not near genes	chr3L	9219937	intergenic	not near genes	chr3L_10_9215001	chr3L_9215001	RAL-340_100b
1877	chr3L	9219243	9219252	chr3L	9219917	9219941	jockey	6	692	23.0	13.0	18.0	0.3	698	chr3L	9219243	intergenic	not near genes	chr3L	9219592	intergenic	not near genes	chr3L	9219941	intergenic	not near genes	chr3L_6_9215001	chr3L_9215001	RAL-340_100b
1878	chr3L	9219253	9219275	chr3L	9219916	9219931	jockey	16	679	16.5	12.0	14.2	1.1	678	chr3L	9219253	intergenic	not near genes	chr3L	9219592	intergenic	not near genes	chr3L	9219931	intergenic	not near genes	chr3L_16_9215001	chr3L_9215001	RAL-340_100b
1880	chr3L	9270599	9270628	chr3L	9278379	9278408	roo	11	7776	8.0	10.0	9.0	1.1	7809	chr3L	9270599	intron	GluRIB +	chr3L	9274504	intron	GluRIB +	chr3L	9278408	exon	GluRIB +	chr3L_11_9270001	chr3L_9270001	RAL-340_100b
1881	chr3L	9270631	9270649	chr3L	9278377	9278394	roo	4	7755	5.5	9.5	7.5	0.5	7763	chr3L	9270631	intron	GluRIB +	chr3L	9274512	intron	GluRIB +	chr3L	9278394	exon	GluRIB +	chr3L_4_9270001	chr3L_9270001	RAL-340_100b
1892	chr3L	9501677	9501731	chr3L	9502188	9502242	roo	19	509	8.0	5.5	6.8	2.4	565	chr3L	9501677	intron	path -	chr3L	9501960	intron	path -	chr3L	9502242	intron	path -	chr3L_19_9500001	chr3L_9500001	RAL-340_100b
1894	chr3L	9533731	9533785	chr3L	9541316	9541344	412	6	7577	3.5	16.0	9.8	0.6	7613	chr3L	9533731	intergenic	not near genes	chr3L	9537538	intergenic	not near genes	chr3L	9541344	intergenic	not near genes	chr3L_6_9535001	chr3L_9535001	RAL-340_100b
1897	chr3L	9571875	9571932	chr3L	9572248	9572305	jockey	10	373	7.5	3.5	5.5	1.5	430	chr3L	9571875	intron	CG42673 +	chr3L	9572090	intron	CG42673 +	chr3L	9572305	intron	CG42673 +	chr3L_10_9570001	chr3L_9570001	RAL-340_100b
1898	chr3L	9575887	9575937	chr3L	9580987	9581042	jockey	21	5102	9.0	11.0	10.0	1.9	5155	chr3L	9575887	intron	CG42673 +	chr3L	9578464	intron	CG42673 +	chr3L	9581042	intron	CG42673 +	chr3L_21_9575001	chr3L_9575001	RAL-340_100b
1911	chr3L	9929661	9929696	chr3L	9938448	9938490	roo	22	8798	12.5	19.0	15.8	1.3	8829	chr3L	9929661	intron	CG34356 +	chr3L	9934076	intron	CG34356 +	chr3L	9938490	intron	CG34356 +	chr3L_22_9930001	chr3L_9930001	RAL-340_100b
1913	chr3L	10060092	10060102	chr3L	10067696	10067706	17.6	6	7604	31.0	8.5	19.8	0.3	7614	chr3L	10060092	intron	dpr6 +	chr3L	10063899	intron	dpr6 +	chr3L	10067706	intron	dpr6 +	chr3L_6_10060001	chr3L_10060001	RAL-340_100b
1914	chr3L	10060103	10060116	chr3L	10067692	10067720	17.6	13	7600	21.0	6.5	13.8	0.9	7617	chr3L	10060103	intron	dpr6 +	chr3L	10063912	intron	dpr6 +	chr3L	10067720	intron	dpr6 +	chr3L_13_10060001	chr3L_10060001	RAL-340_100b
1932	chr3L	10414921	10414947	chr3L	10417318	10417344	Doc	9	2396	21.0	12.5	16.8	0.5	2423	chr3L	10414921	intergenic	CG12362 +	chr3L	10416132	intergenic	not near genes	chr3L	10417344	intergenic	not near genes	chr3L_9_10415001	chr3L_10415001	RAL-340_100b
1933	chr3L	10414948	10414970	chr3L	10417314	10417367	Doc	19	2388	13.5	10.0	11.8	1.5	2419	chr3L	10414948	intergenic	CG12362 +	chr3L	10416158	intergenic	not near genes	chr3L	10417367	intergenic	not near genes	chr3L_19_10415001	chr3L_10415001	RAL-340_100b
1950	chr3L	11087016	11087090	chr3L	11088847	11088857	S-element	13	1809	0.5	8.5	4.5	2.4	1841	chr3L	11087016	intron	JIL-1 -	chr3L	11087936	intron	JIL-1 -	chr3L	11088857	intron	JIL-1 -	chr3L_13_11085001	chr3L_11085001	RAL-340_100b
1955	chr3L	11264469	11264474	chr3L	11271426	11271440	17.6	5	6970	8.0	11.0	9.5	0.5	6971	chr3L	11264469	intergenic	not near genes	chr3L	11267954	intergenic	not near genes	chr3L	11271440	intergenic	not near genes	chr3L_5_11265001	chr3L_11265001	RAL-340_100b
1956	chr3L	11264475	11264476	chr3L	11271415	11271449	17.6	6	6966	7.5	5.0	6.2	0.8	6974	chr3L	11264475	intergenic	not near genes	chr3L	11267962	intergenic	not near genes	chr3L	11271449	intergenic	not near genes	chr3L_6_11265001	chr3L_11265001	RAL-340_100b
1960	chr3L	11329667	11329727	chr3L	11332896	11332939	jockey	31	3224	11.5	8.0	9.8	2.9	3272	chr3L	11329667	intergenic	not near genes	chr3L	11331303	intergenic	not near genes	chr3L	11332939	intergenic	not near genes	chr3L_31_11330001	chr3L_11330001	RAL-340_100b
1973	chr3L	11564808	11564812	chr3L	11572408	11572434	412	6	7619	5.0	20.5	12.8	0.4	7626	chr3L	11564808	exon	CG33267 +	chr3L	11568621	intron	CG33267 +	chr3L	11572434	exon	CG33267 +	chr3L_6_11565001	chr3L_11565001	RAL-340_100b
1978	chr3L	11723063	11723111	chr3L	11727883	11727925	Doc	34	4818	6.5	14.5	10.5	3.0	4862	chr3L	11723063	3` UTR	Bmcp +	chr3L	11725494	intron	Bmcp +	chr3L	11727925	3` UTR	Bmcp +	chr3L_34_11725001	chr3L_11725001	RAL-340_100b
1985	chr3L	8095982	8095985	chr3L	11777678	11777678	roo	5	3681694	68.5	21.0	44.8	0.1	3681696	chr3L	8095982	intron	Ect4 +	chr3L	9936830	intron	CG34356 +	chr3L	11777678	intron,intron	Pi3K68D -,CG14131 +	chr3L_5_9935001	chr3L_9935001	RAL-340_100b
1993	chr3L	11864534	11864582	chr3L	11865853	11865902	pogo	21	1316	7.5	11.0	9.2	2.1	1368	chr3L	11864534	intron	CG44837 -	chr3L	11865218	intron	CG44837 -	chr3L	11865902	intron	CG44837 -	chr3L_21_11865001	chr3L_11865001	RAL-340_100b
2027	chr3L	12874900	12874915	chr3L	12877217	12877232	jockey	10	2317	19.5	11.0	15.2	0.6	2332	chr3L	12874900	intergenic	not near genes	chr3L	12876066	intergenic	not near genes	chr3L	12877232	intergenic	not near genes	chr3L_10_12875001	chr3L_12875001	RAL-340_100b
2028	chr3L	12874916	12874958	chr3L	12877216	12877265	jockey	22	2312	10.5	10.5	10.5	1.9	2349	chr3L	12874916	intergenic	not near genes	chr3L	12876090	intergenic	not near genes	chr3L	12877265	intergenic	not near genes	chr3L_22_12875001	chr3L_12875001	RAL-340_100b
2031	chr3L	12919251	12919311	chr3L	12924760	12924770	Rt1c	8	5490	2.0	6.5	4.2	1.5	5519	chr3L	12919251	intergenic	not near genes	chr3L	12922010	intergenic	not near genes	chr3L	12924770	intergenic	not near genes	chr3L_8_12920001	chr3L_12920001	RAL-340_100b
2034	chr3L	12957770	12957783	chr3L	12962270	12962290	copia	9	4505	17.5	14.5	16.0	0.5	4520	chr3L	12957770	intergenic	not near genes	chr3L	12960030	intergenic	not near genes	chr3L	12962290	intergenic	not near genes	chr3L_9_12960001	chr3L_12960001	RAL-340_100b
2035	chr3L	12957788	12957815	chr3L	12962289	12962319	copia	14	4505	12.5	20.0	16.2	0.8	4531	chr3L	12957788	intergenic	not near genes	chr3L	12960054	intergenic	not near genes	chr3L	12962319	intergenic	not near genes	chr3L_14_12960001	chr3L_12960001	RAL-340_100b
2056	chr3L	13525133	13525137	chr3L	13532954	13532958	roo	6	7821	32.5	10.5	21.5	0.3	7825	chr3L	13525133	intergenic	not near genes	chr3L	13529046	intergenic	not near genes	chr3L	13532958	intergenic	not near genes	chr3L_6_13525001	chr3L_13525001	RAL-340_100b
2057	chr3L	13525138	13525189	chr3L	13532952	13533000	roo	38	7817	9.0	8.5	8.8	3.9	7862	chr3L	13525138	intergenic	not near genes	chr3L	13529069	intergenic	not near genes	chr3L	13533000	intergenic	not near genes	chr3L_38_13525001	chr3L_13525001	RAL-340_100b
2058	chr3L	13574608	13574615	chr3L	13580144	13580151	Rt1c	4	5536	18.5	21.0	19.8	0.2	5543	chr3L	13574608	intron	bru-3 -	chr3L	13577380	intron	bru-3 -	chr3L	13580151	intron	bru-3 -	chr3L_4_13575001	chr3L_13575001	RAL-340_100b
2065	chr3L	13804531	13804572	chr3L	13822834	13822882	roo	9	18308	3.5	5.5	4.5	1.6	18351	chr3L	13804531	intergenic	not near genes	chr3L	13813706	intergenic	not near genes	chr3L	13822882	intergenic	not near genes	chr3L_9_13810001	chr3L_13810001	RAL-340_100b
2076	chr3L	14245549	14245593	chr3L	14245664	14245712	1360	11	116	5.5	8.5	7.0	1.4	163	chr3L	14245549	3` UTR	CR44561 -	chr3L	14245630	3` UTR	CR44561 -	chr3L	14245712	intergenic	CR44561 -,CR44560 +	chr3L_11_14245001	chr3L_14245001	RAL-340_100b
2077	chr3L	14267352	14267393	chr3L	14271814	14271833	F-element	13	4454	9.5	6.5	8.0	1.4	4481	chr3L	14267352	intergenic	not near genes	chr3L	14269592	intergenic	not near genes	chr3L	14271833	intergenic	not near genes	chr3L_13_14265001	chr3L_14265001	RAL-340_100b
2079	chr3L	14295966	14296014	chr3L	14296466	14296525	roo	22	501	3.5	8.0	5.8	3.2	559	chr3L	14295966	intron	fz +	chr3L	14296246	intron	fz +	chr3L	14296525	intron	fz +	chr3L_22_14295001	chr3L_14295001	RAL-340_100b
2083	chr3L	14312014	14312020	chr3L	14316843	14316859	X-element	4	4835	11.0	6.5	8.8	0.4	4845	chr3L	14312014	exon	fz +	chr3L	14314436	intron	fz +	chr3L	14316859	intron	fz +	chr3L_4_14310001	chr3L_14310001	RAL-340_100b
2084	chr3L	14312023	14312055	chr3L	14316839	14316861	X-element	11	4825	5.5	5.5	5.5	1.7	4838	chr3L	14312023	exon	fz +	chr3L	14314442	intron	fz +	chr3L	14316861	intron	fz +	chr3L_11_14310001	chr3L_14310001	RAL-340_100b
2092	chr3L	14468432	14468474	chr3L	14473663	14473704	copia	10	5229	7.5	7.0	7.2	1.2	5272	chr3L	14468432	intron	bbg -	chr3L	14471068	intron	bbg -	chr3L	14473704	intron	bbg -	chr3L_10_14470001	chr3L_14470001	RAL-340_100b
2099	chr3L	14721170	14721204	chr3L	14723028	14723072	Rt1c	16	1864	8.5	11.0	9.8	1.5	1902	chr3L	14721170	intron	ome +	chr3L	14722121	intron	ome +	chr3L	14723072	intron	ome +	chr3L_16_14720001	chr3L_14720001	RAL-340_100b
2100	chr3L	14725580	14725631	chr3L	14728608	14728628	Doc	18	3022	5.0	3.5	4.2	3.5	3048	chr3L	14725580	intron	ome +	chr3L	14727104	intron	ome +	chr3L	14728628	intron	ome +	chr3L_18_14725001	chr3L_14725001	RAL-340_100b
2103	chr3L	14954341	14954348	chr3L	14956035	14956042	transib2	8	1694	21.0	1.0	11.0	0.7	1701	chr3L	14954341	intergenic	not near genes	chr3L	14955192	intergenic	not near genes	chr3L	14956042	intergenic	not near genes	chr3L_8_14955001	chr3L_14955001	RAL-340_100b
2104	chr3L	14954350	14954391	chr3L	14956034	14956085	transib2	15	1693	8.5	1.0	4.8	2.6	1735	chr3L	14954350	intergenic	not near genes	chr3L	14955218	intergenic	not near genes	chr3L	14956085	intergenic	not near genes	chr3L_15_14955001	chr3L_14955001	RAL-340_100b
2105	chr3L	14970737	14970750	chr3L	14971072	14971085	F-element	7	335	13.5	12.5	13.0	0.5	348	chr3L	14970737	intergenic	Tom +	chr3L	14970911	intergenic	not near genes	chr3L	14971085	intergenic	not near genes	chr3L_7_14970001	chr3L_14970001	RAL-340_100b
2106	chr3L	14970756	14970760	chr3L	14971071	14971092	F-element	4	325	12.0	12.5	12.2	0.3	336	chr3L	14970756	intergenic	Tom +	chr3L	14970924	intergenic	not near genes	chr3L	14971092	intergenic	not near genes	chr3L_4_14970001	chr3L_14970001	RAL-340_100b
2110	chr3L	15085048	15085080	chr3L	15086219	15086271	1360	14	1180	3.5	3.0	3.2	3.3	1223	chr3L	15085048	intron	cp309 -	chr3L	15085660	intron	cp309 -	chr3L	15086271	intron	cp309 -	chr3L_14_15085001	chr3L_15085001	RAL-340_100b
2115	chr3L	15423742	15423756	chr3L	15426611	15426625	opus	9	2869	18.5	4.0	11.2	0.7	2883	chr3L	15423742	intergenic	not near genes	chr3L	15425184	intergenic	not near genes	chr3L	15426625	intergenic	not near genes	chr3L_9_15425001	chr3L_15425001	RAL-340_100b
2116	chr3L	15423758	15423779	chr3L	15426627	15426648	opus	16	2867	9.5	5.5	7.5	1.9	2890	chr3L	15423758	intergenic	not near genes	chr3L	15425203	intergenic	not near genes	chr3L	15426648	intergenic	not near genes	chr3L_16_15425001	chr3L_15425001	RAL-340_100b
2125	chr3L	15554901	15554947	chr3L	15556713	15556759	S-element	18	1810	8.5	6.5	7.5	2.1	1858	chr3L	15554901	intron	AGO2 +	chr3L	15555830	intron	AGO2 +	chr3L	15556759	intron	AGO2 +	chr3L_18_15555001	chr3L_15555001	RAL-340_100b
2138	chr3L	15899216	15899249	chr3L	15899793	15899831	jockey	9	582	7.5	3.0	5.2	1.5	615	chr3L	15899216	intergenic	pHCl -	chr3L	15899524	intergenic	pHCl -	chr3L	15899831	intergenic	sff -	chr3L_9_15895001	chr3L_15895001	RAL-340_100b
2144	chr3L	16184085	16184136	chr3L	16188929	16188980	X-element	25	4844	9.0	9.0	9.0	2.5	4895	chr3L	16184085	intergenic	not near genes	chr3L	16186532	intergenic	not near genes	chr3L	16188980	intergenic	not near genes	chr3L_25_16185001	chr3L_16185001	RAL-340_100b
2157	chr3L	16443822	16443878	chr3L	16446187	16446243	Doc	40	2359	8.0	5.5	6.8	5.1	2421	chr3L	16443822	intron,intron	CG33158 +,dsx-c73A -	chr3L	16445032	intron,intron	CG33158 +,dsx-c73A -	chr3L	16446243	intron,intron	CG33158 +,dsx-c73A -	chr3L_40_16445001	chr3L_16445001	RAL-340_100b
2159	chr3L	16493957	16493990	chr3L	16494499	16494532	jockey	13	542	11.0	9.5	10.2	1.2	575	chr3L	16493957	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494244	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494532	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L_13_16490001	chr3L_16490001	RAL-340_100b
2160	chr3L	16493991	16494008	chr3L	16494490	16494535	jockey	4	528	5.5	4.5	5.0	0.7	544	chr3L	16493991	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494263	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494535	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L_4_16490001	chr3L_16490001	RAL-340_100b
2167	chr3L	16616488	16616535	chr3L	16621841	16621888	297	16	5345	8.5	10.5	9.5	1.5	5400	chr3L	16616488	3` UTR	Abl -	chr3L	16619188	3` UTR	Abl -	chr3L	16621888	3` UTR	Abl -	chr3L_16_16615001	chr3L_16615001	RAL-340_100b
2168	chr3L	16616536	16616543	chr3L	16621839	16621888	297	10	5339	8.0	10.5	9.2	1.0	5352	chr3L	16616536	3` UTR	Abl -	chr3L	16619212	3` UTR	Abl -	chr3L	16621888	3` UTR	Abl -	chr3L_10_16615001	chr3L_16615001	RAL-340_100b
2174	chr3L	16730913	16730934	chr3L	16731112	16731133	BS	10	198	6.5	6.5	6.5	1.3	220	chr3L	16730913	intergenic	Dbp73D -	chr3L	16731023	intergenic	Dbp73D -	chr3L	16731133	intergenic	Dbp73D -	chr3L_10_16730001	chr3L_16730001	RAL-340_100b
2191	chr3L	16945706	16945757	chr3L	16954884	16954935	roo	23	9170	9.0	6.0	7.5	2.7	9229	chr3L	16945706	exon	Obp73a +	chr3L	16950320	intergenic	not near genes	chr3L	16954935	5` UTR	Nc73EF +	chr3L_23_16950001	chr3L_16950001	RAL-340_100b
2196	chr3L	17034908	17034971	chr3L	17035121	17035128	G2	13	207	1.5	2.5	2.0	4.3	220	chr3L	17034908	intergenic	not near genes	chr3L	17035018	intergenic	not near genes	chr3L	17035128	intergenic	not near genes	chr3L_13_17035001	chr3L_17035001	RAL-340_100b
2197	chr3L	17084982	17085035	chr3L	17094156	17094209	roo	16	9173	4.5	8.5	6.5	2.1	9227	chr3L	17084982	intron	Rbp6 -	chr3L	17089596	intron	Rbp6 -	chr3L	17094209	intron	Rbp6 -	chr3L_16_17085001	chr3L_17085001	RAL-340_100b
2217	chr3L	17516968	17516971	chr3L	17524551	17524554	412	4	7582	25.5	10.0	17.8	0.2	7586	chr3L	17516968	intron	CG7564 +	chr3L	17520761	intron	CG7564 +	chr3L	17524554	3` UTR	CG7564 +	chr3L_4_17520001	chr3L_17520001	RAL-340_100b
2218	chr3L	17516973	17517008	chr3L	17524540	17524591	412	27	7579	12.5	6.5	9.5	2.6	7618	chr3L	17516973	intron	CG7564 +	chr3L	17520782	intron	CG7564 +	chr3L	17524591	3` UTR	CG7564 +	chr3L_27_17520001	chr3L_17520001	RAL-340_100b
2223	chr3L	17730831	17730838	chr3L	17738181	17738193	mdg1	6	7353	20.5	11.5	16.0	0.4	7362	chr3L	17730831	intron	Ccn +	chr3L	17734512	intron	Ccn +	chr3L	17738193	intron	Ccn +	chr3L_6_17730001	chr3L_17730001	RAL-340_100b
2224	chr3L	17730839	17730884	chr3L	17738179	17738201	mdg1	26	7342	6.5	10.5	8.5	2.7	7362	chr3L	17730839	intron	Ccn +	chr3L	17734520	intron	Ccn +	chr3L	17738201	intron	Ccn +	chr3L_26_17730001	chr3L_17730001	RAL-340_100b
2228	chr3L	17799789	17799829	chr3L	17801601	17801641	S-element	9	1812	4.5	3.5	4.0	1.8	1852	chr3L	17799789	intron	NUCB1 -	chr3L	17800715	intron	NUCB1 -	chr3L	17801641	intron	NUCB1 -	chr3L_9_17800001	chr3L_17800001	RAL-340_100b
2233	chr3L	17918349	17918401	chr3L	17921177	17921222	opus	12	2826	9.0	5.5	7.2	1.5	2873	chr3L	17918349	intergenic	not near genes	chr3L	17919786	intergenic	not near genes	chr3L	17921222	intergenic	not near genes	chr3L_12_17915001	chr3L_17915001	RAL-340_100b
2241	chr3L	18047681	18047728	chr3L	18056762	18056809	roo	17	9079	11.5	6.5	9.0	1.7	9128	chr3L	18047681	intron	Eip75B -	chr3L	18052245	intron	Eip75B -	chr3L	18056809	intron	Eip75B -	chr3L_17_18050001	chr3L_18050001	RAL-340_100b
2273	chr3L	18506115	18506159	chr3L	18509603	18509647	F-element	15	3486	5.0	7.0	6.0	2.1	3532	chr3L	18506115	intergenic	not near genes	chr3L	18507881	intergenic	not near genes	chr3L	18509647	intergenic	not near genes	chr3L_15_18505001	chr3L_18505001	RAL-340_100b
2274	chr3L	18528608	18528657	chr3L	18537793	18537843	roo	14	9183	11.5	6.0	8.8	1.4	9235	chr3L	18528608	intergenic	not near genes	chr3L	18533226	intergenic	not near genes	chr3L	18537843	intergenic	not near genes	chr3L_14_18530001	chr3L_18530001	RAL-340_100b
2279	chr3L	18593935	18593958	chr3L	18595940	18595953	Doc	8	2004	7.5	0.0	3.8	1.7	2018	chr3L	18593935	intergenic	term -	chr3L	18594944	intergenic	not near genes	chr3L	18595953	intergenic	CR45389 +	chr3L_8_18590001	chr3L_18590001	RAL-340_100b
2288	chr3L	18710737	18710786	chr3L	18718714	18718763	Stalker2	10	7972	4.5	3.0	3.8	2.1	8026	chr3L	18710737	intergenic	not near genes	chr3L	18714750	intergenic	not near genes	chr3L	18718763	intergenic	not near genes	chr3L_10_18710001	chr3L_18710001	RAL-340_100b
2291	chr3L	18772385	18772436	chr3L	18781091	18781142	roo	33	8703	15.0	12.0	13.5	2.3	8757	chr3L	18772385	intron	ftz-f1 -	chr3L	18776764	intron	ftz-f1 -	chr3L	18781142	intron	ftz-f1 -	chr3L_33_18775001	chr3L_18775001	RAL-340_100b
2305	chr3L	19008820	19008869	chr3L	19009176	19009232	jockey	18	359	5.0	12.0	8.5	1.9	412	chr3L	19008820	intron	nkd -	chr3L	19009026	intron	nkd -	chr3L	19009232	intron	nkd -	chr3L_18_19005001	chr3L_19005001	RAL-340_100b
2309	chr3L	19115613	19115630	chr3L	19115818	19115831	BS	5	201	22.0	9.0	15.5	0.3	218	chr3L	19115613	intron	CG14082 -	chr3L	19115722	intron	CG14082 -	chr3L	19115831	intron	CG14082 -	chr3L_5_19115001	chr3L_19115001	RAL-340_100b
2310	chr3L	19115639	19115641	chr3L	19115844	19115846	BS	4	204	19.5	15.0	17.2	0.2	207	chr3L	19115639	intron	CG14082 -	chr3L	19115742	intron	CG14082 -	chr3L	19115846	intron	CG14082 -	chr3L_4_19115001	chr3L_19115001	RAL-340_100b
2311	chr3L	19115647	19115648	chr3L	19115835	19115853	BS	4	198	18.0	11.5	14.8	0.3	206	chr3L	19115647	intron	CG14082 -	chr3L	19115750	intron	CG14082 -	chr3L	19115853	intron	CG14082 -	chr3L_4_19115001	chr3L_19115001	RAL-340_100b
2312	chr3L	19115650	19115662	chr3L	19115823	19115867	BS	6	192	10.5	10.5	10.5	0.5	217	chr3L	19115650	intron	CG14082 -	chr3L	19115758	intron	CG14082 -	chr3L	19115867	intron	CG14082 -	chr3L_6_19115001	chr3L_19115001	RAL-340_100b
2313	chr3L	19117020	19117076	chr3L	19124492	19124548	mdg1	46	7468	5.5	9.0	7.2	5.6	7528	chr3L	19117020	intron	CG14082 -	chr3L	19120784	intron	CG14082 -	chr3L	19124548	intron	CG14082 -	chr3L_46_19120001	chr3L_19120001	RAL-340_100b
2315	chr3L	19208034	19208084	chr3L	19209433	19209469	Doc	22	1394	5.5	7.0	6.2	3.1	1435	chr3L	19208034	intron	fz2 -	chr3L	19208752	intron	fz2 -	chr3L	19209469	intron	fz2 -	chr3L_22_19205001	chr3L_19205001	RAL-340_100b
2346	chr3L	19820273	19820315	chr3L	19827847	19827874	412	26	7572	13.5	8.0	10.8	2.2	7601	chr3L	19820273	intron	Deaf1 +	chr3L	19824074	intron	Deaf1 +	chr3L	19827874	intron	Deaf1 +	chr3L_26_19820001	chr3L_19820001	RAL-340_100b
2347	chr3L	19848487	19848511	chr3L	19857702	19857726	roo	11	9215	16.0	16.5	16.2	0.6	9239	chr3L	19848487	intron	Papss +	chr3L	19853106	intron	Papss +	chr3L	19857726	intron	Papss +	chr3L_11_19850001	chr3L_19850001	RAL-340_100b
2348	chr3L	19848513	19848528	chr3L	19857693	19857743	roo	14	9205	10.5	13.0	11.8	1.1	9230	chr3L	19848513	intron	Papss +	chr3L	19853128	intron	Papss +	chr3L	19857743	intron	Papss +	chr3L_14_19850001	chr3L_19850001	RAL-340_100b
2349	chr3L	19861799	19861843	chr3L	19863612	19863656	S-element	13	1813	11.0	9.5	10.2	1.2	1857	chr3L	19861799	5` UTR	CR45433 +	chr3L	19862728	intergenic	not near genes	chr3L	19863656	intergenic	not near genes	chr3L_13_19860001	chr3L_19860001	RAL-340_100b
2361	chr3L	20113635	20113690	chr3L	20122917	20122938	roo	19	9278	7.5	8.5	8.0	2.1	9303	chr3L	20113635	intergenic	not near genes	chr3L	20118286	intergenic	not near genes	chr3L	20122938	intergenic	not near genes	chr3L_19_20115001	chr3L_20115001	RAL-340_100b
2372	chr3L	20476735	20476748	chr3L	20484357	20484357	springer	9	7622	23.0	8.5	15.8	0.5	7622	chr3L	20476735	3` UTR	isoQC +	chr3L	20480546	intergenic	not near genes	chr3L	20484357	3` UTR	ZnT77C -	chr3L_9_20480001	chr3L_20480001	RAL-340_100b
2373	chr3L	20476751	20476778	chr3L	20484354	20484366	springer	15	7617	10.5	7.0	8.8	1.5	7615	chr3L	20476751	3` UTR	isoQC +	chr3L	20480558	intergenic	not near genes	chr3L	20484366	3` UTR	ZnT77C -	chr3L_15_20480001	chr3L_20480001	RAL-340_100b
2374	chr3L	20487640	20487669	chr3L	20488116	20488140	INE-1	18	475	17.5	10.0	13.8	1.2	500	chr3L	20487640	intron	ZnT77C -	chr3L	20487890	intron	ZnT77C -	chr3L	20488140	exon	ZnT77C -	chr3L_18_20485001	chr3L_20485001	RAL-340_100b
2375	chr3L	20487671	20487674	chr3L	20488112	20488150	INE-1	5	461	12.0	7.5	9.8	0.5	479	chr3L	20487671	intron	ZnT77C -	chr3L	20487910	intron	ZnT77C -	chr3L	20488150	exon	ZnT77C -	chr3L_5_20485001	chr3L_20485001	RAL-340_100b
2379	chr3L	20590040	20590091	chr3L	20590604	20590655	412	18	559	5.0	7.0	6.0	2.6	615	chr3L	20590040	intergenic	not near genes	chr3L	20590348	intergenic	not near genes	chr3L	20590655	intergenic	not near genes	chr3L_18_20590001	chr3L_20590001	RAL-340_100b
2383	chr3L	20821265	20821308	chr3L	20824898	20824944	NOF	12	3633	7.0	15.5	11.2	1.0	3679	chr3L	20821265	intron	Pka-R1 +	chr3L	20823104	intron	Pka-R1 +	chr3L	20824944	intron	Pka-R1 +	chr3L_12_20820001	chr3L_20820001	RAL-340_100b
2390	chr3L	21014891	21014947	chr3L	21023397	21023453	Tirant	29	8498	7.5	14.5	11.0	2.4	8562	chr3L	21014891	intron	skd -	chr3L	21019172	intron	skd -	chr3L	21023453	intron	skd -	chr3L_29_21015001	chr3L_21015001	RAL-340_100b
2394	chr3L	21151841	21151895	chr3L	21156950	21157004	flea	28	5107	14.0	4.5	9.2	2.7	5163	chr3L	21151841	intron	Ac78C -	chr3L	21154422	intron	Ac78C -	chr3L	21157004	intron	Ac78C -	chr3L_28_21150001	chr3L_21150001	RAL-340_100b
2395	chr3L	21243730	21243743	chr3L	21251309	21251325	412	8	7582	25.0	16.0	20.5	0.4	7595	chr3L	21243730	intron	Eip78C +	chr3L	21247528	intron	Eip78C +	chr3L	21251325	intron	Eip78C +	chr3L_8_21245001	chr3L_21245001	RAL-340_100b
2396	chr3L	21243746	21243770	chr3L	21251309	21251325	412	6	7567	11.0	16.0	13.5	0.4	7579	chr3L	21243746	intron	Eip78C +	chr3L	21247536	intron	Eip78C +	chr3L	21251325	intron	Eip78C +	chr3L_6_21245001	chr3L_21245001	RAL-340_100b
2398	chr3L	21306123	21306157	chr3L	21315307	21315341	roo	12	9182	4.5	1.0	2.8	3.2	9218	chr3L	21306123	3` UTR	CG7632 +	chr3L	21310732	intron	Pc -	chr3L	21315341	3` UTR	Pc -	chr3L_12_21310001	chr3L_21310001	RAL-340_100b
2399	chr3L	21306167	21306177	chr3L	21315305	21315361	roo	5	9169	3.5	1.0	2.2	1.6	9194	chr3L	21306167	3` UTR,3` UTR	CG7632 +,Pc -	chr3L	21310764	intron	Pc -	chr3L	21315361	3` UTR	Pc -	chr3L_5_21310001	chr3L_21310001	RAL-340_100b
2400	chr3L	21372701	21372748	chr3L	21379234	21379281	McClintock	19	6530	6.0	10.5	8.2	2.1	6580	chr3L	21372701	intergenic	not near genes	chr3L	21375991	intergenic	not near genes	chr3L	21379281	intergenic	not near genes	chr3L_19_21375001	chr3L_21375001	RAL-340_100b
2407	chr3L	21498828	21498851	chr3L	21500488	21500512	1360	15	1659	13.5	16.5	15.0	0.9	1684	chr3L	21498828	5` UTR,intron	CR43933 +,Glg1 -	chr3L	21499670	intron	Glg1 -	chr3L	21500512	intron	Glg1 -	chr3L_15_21495001	chr3L_21495001	RAL-340_100b
2408	chr3L	21498853	21498862	chr3L	21500486	21500512	1360	4	1645	10.0	16.0	13.0	0.3	1659	chr3L	21498853	intron	Glg1 -	chr3L	21499682	intron	Glg1 -	chr3L	21500512	intron	Glg1 -	chr3L_4_21495001	chr3L_21495001	RAL-340_100b
2410	chr3L	21749301	21749333	chr3L	21754481	21754484	Doc	6	5171	19.5	12.0	15.8	0.4	5183	chr3L	21749301	intron	Syn1 -	chr3L	21751892	intron	Syn1 -	chr3L	21754484	intron	Syn1 -	chr3L_6_21750001	chr3L_21750001	RAL-340_100b
2411	chr3L	21749335	21749352	chr3L	21754473	21754494	Doc	12	5157	11.5	8.5	10.0	1.1	5159	chr3L	21749335	intron	Syn1 -	chr3L	21751914	intron	Syn1 -	chr3L	21754494	intron	Syn1 -	chr3L_12_21750001	chr3L_21750001	RAL-340_100b
2423	chr3L	22099677	22099703	chr3L	22105859	22105914	3S18	11	6198	7.5	6.0	6.8	1.4	6237	chr3L	22099677	intergenic	not near genes	chr3L	22102796	intergenic	not near genes	chr3L	22105914	intergenic	not near genes	chr3L_11_22100001	chr3L_22100001	RAL-340_100b
2436	chr3L	22555745	22555802	chr3L	22563240	22563277	blood	31	7489	7.0	7.0	7.0	3.9	7532	chr3L	22555745	intergenic	not near genes	chr3L	22559511	intergenic	not near genes	chr3L	22563277	intergenic	not near genes	chr3L_31_22555001	chr3L_22555001	RAL-340_100b
2439	chr3L	22577608	22577647	chr3L	22582409	22582437	Doc	27	4805	3.5	9.5	6.5	3.6	4829	chr3L	22577608	intergenic	not near genes	chr3L	22580022	intergenic	not near genes	chr3L	22582437	3` UTR	CG14459 -	chr3L_27_22580001	chr3L_22580001	RAL-340_100b
2440	chr3L	22617169	22617222	chr3L	22624646	22624698	blood	23	7472	5.0	6.0	5.5	3.5	7529	chr3L	22617169	intron	CG14459 -	chr3L	22620934	intron	CG14459 -	chr3L	22624698	intron	CG14459 -	chr3L_23_22620001	chr3L_22620001	RAL-340_100b
2441	chr3L	22631899	22631957	chr3L	22897031	22897089	Ivk	39	265125	54.0	13.0	33.5	1.1	265190	chr3L	22631899	intron	CG14459 -	chr3L	22764494	intron	SPoCk +	chr3L	22897089	intergenic	CR44688 +	chr3L_39_22760001	chr3L_22760001	RAL-340_100b
2446	chr3L	22761394	22761417	chr3L	22766853	22766875	Ivk	4	5458	9.5	6.5	8.0	0.4	5481	chr3L	22761394	intron	SPoCk +	chr3L	22764134	intron	SPoCk +	chr3L	22766875	intron	SPoCk +	chr3L_4_22760001	chr3L_22760001	RAL-340_100b
2450	chr3L	22865986	22866007	chr3L	22867119	22867165	Doc	12	1153	6.0	8.0	7.0	1.5	1179	chr3L	22865986	intron	CG33170 +	chr3L	22866576	intron	CG33170 +	chr3L	22867165	intron	CG33170 +	chr3L_12_22865001	chr3L_22865001	RAL-340_100b
2453	chr3L	22632817	22632840	chr3L	22896938	22896954	Ivk	10	264116	74.5	48.5	61.5	0.2	264137	chr3L	22632817	intron	CG14459 -	chr3L	22764886	intron	SPoCk +	chr3L	22896954	intergenic	CR44688 +	chr3L_10_22760001	chr3L_22760001	RAL-340_100b
2454	chr3L	22632838	22632847	chr3L	22896963	22896967	Ivk	9	264117	74.5	36.5	55.5	0.2	264129	chr3L	22632838	intron	CG14459 -	chr3L	22764902	intron	SPoCk +	chr3L	22896967	intergenic	CR44688 +	chr3L_9_22760001	chr3L_22760001	RAL-340_100b
2455	chr3L	22632825	22632856	chr3L	22896970	22896970	Ivk	4	264124	77.0	32.0	54.5	0.1	264145	chr3L	22632825	intron	CG14459 -	chr3L	22764898	intron	SPoCk +	chr3L	22896970	intergenic	CR44688 +	chr3L_4_22760001	chr3L_22760001	RAL-340_100b
2456	chr3L	22632818	22632842	chr3L	22896972	22896988	Ivk	15	264128	74.5	30.5	52.5	0.3	264170	chr3L	22632818	intron	CG14459 -	chr3L	22764903	intron	SPoCk +	chr3L	22896988	intergenic	CR44688 +	chr3L_15_22760001	chr3L_22760001	RAL-340_100b
2478	chr3L	22989839	22989894	chr3L	22996838	22996893	297	14	6994	8.5	2.5	5.5	2.2	7054	chr3L	22989839	intergenic	not near genes	chr3L	22993366	intergenic	not near genes	chr3L	22996893	intergenic	not near genes	chr3L_14_22990001	chr3L_22990001	RAL-340_100b
2485	chr3L	23290463	23290470	chr3L	23295321	23295328	X-element	4	4858	40.0	25.0	32.5	0.1	4865	chr3L	23290463	intergenic	not near genes	chr3L	23292896	intergenic	not near genes	chr3L	23295328	intergenic	not near genes	chr3L_4_23290001	chr3L_23290001	RAL-340_100b
2486	chr3L	23290474	23290510	chr3L	23295332	23295368	X-element	28	4857	15.5	31.0	23.2	1.2	4894	chr3L	23290474	intergenic	not near genes	chr3L	23292921	intergenic	not near genes	chr3L	23295368	intergenic	not near genes	chr3L_28_23290001	chr3L_23290001	RAL-340_100b
2493	chr3L	24012392	24012433	chr3L	24020758	24020799	roo	7	8361	3.5	7.0	5.2	1.1	8407	chr3L	24012392	intergenic	not near genes	chr3L	24016596	intergenic	not near genes	chr3L	24020799	intergenic	not near genes	chr3L_7_24015001	chr3L_24015001	RAL-340_100b
2495	chr3L	24168770	24168810	chr3L	24176115	24176153	ZAM	13	7345	7.0	3.5	5.2	2.1	7383	chr3L	24168770	intron	Snap25 +	chr3L	24172462	intron	Snap25 +	chr3L	24176153	intron	Snap25 +	chr3L_13_24170001	chr3L_24170001	RAL-340_100b
2499	chr3L	24791874	24791916	chr3L	24796678	24796711	Doc	14	4802	3.0	7.0	5.0	2.3	4837	chr3L	24791874	intergenic	not near genes	chr3L	24794292	intergenic	not near genes	chr3L	24796711	intergenic	not near genes	chr3L_14_24790001	chr3L_24790001	RAL-340_100b
2500	chr3L	24811048	24811051	chr3L	24821492	24821494	mdg1	13	10443	24.0	47.5	35.8	0.4	10446	chr3L	24811048	intergenic	not near genes	chr3L	24816271	intergenic	not near genes	chr3L	24821494	intergenic	not near genes	chr3L_13_24815001	chr3L_24815001	RAL-340_100b
2505	chr3L	24811048	24811050	chr3L	24821493	24821493	mdg1	7	10443	24.0	48.0	36.0	0.2	10445	chr3L	24811048	intergenic	not near genes	chr3L	24816270	intergenic	not near genes	chr3L	24821493	intergenic	not near genes	chr3L_7_24815001	chr3L_24815001	RAL-340_100b
2510	chr3L	21448026	21448027	chr3L	25486593	25486594	Cr1a	4	4038567	42.5	16.0	29.2	0.1	4038568	chr3L	21448026	3` UTR	Syx7 +	chr3L	23467310	intergenic	not near genes	chr3L	25486594	intron	CG41343 -	chr3L_4_23465001	chr3L_23465001	RAL-340_100b
2512	chr3L	26417906	26417919	chr3L	26640351	26640383	Idefix	20	222439	0.0	3.5	1.8	7.1	222477	chr3L	26417906	intergenic	not near genes	chr3L	26529144	intergenic	not near genes	chr3L	26640383	intergenic	not near genes	chr3L_20_26525001	chr3L_26525001	RAL-340_100b
2513	chr3L	23941244	23941244	chr3L	26882298	26882298	1360	9	2941054	39.0	9.5	24.2	0.4	2941054	chr3L	23941244	intron	CG40470 -	chr3L	25411771	intergenic	not near genes	chr3L	26882298	intergenic	not near genes	chr3L_9_25410001	chr3L_25410001	RAL-340_100b
2514	chr3L	23941235	23941245	chr3L	26882299	26882299	1360	12	2941055	39.0	8.5	23.8	0.5	2941064	chr3L	23941235	intron	CG40470 -	chr3L	25411767	intergenic	not near genes	chr3L	26882299	intergenic	not near genes	chr3L_12_25410001	chr3L_25410001	RAL-340_100b
2515	chr3L	23941244	23941246	chr3L	26882300	26882300	1360	11	2941054	40.0	7.5	23.8	0.4	2941056	chr3L	23941244	intron	CG40470 -	chr3L	25411772	intergenic	not near genes	chr3L	26882300	intergenic	not near genes	chr3L_11_25410001	chr3L_25410001	RAL-340_100b
2523	chr3R	4105032	4105064	chr3R	4110240	4110293	copia	6	5225	5.5	4.5	5.0	1.0	5261	chr3R	4105032	intergenic	not near genes	chr3R	4107662	intergenic	not near genes	chr3R	4110293	intergenic	not near genes	chr3R_6_4105001	chr3R_4105001	RAL-340_100b
2525	chr3R	4206049	4206101	chr3R	4211649	4211701	mdg3	24	5597	8.0	6.0	7.0	3.0	5652	chr3R	4206049	intron	CG14636 -	chr3R	4208875	intron	CG14636 -	chr3R	4211701	intron	CG14636 -	chr3R_24_4205001	chr3R_4205001	RAL-340_100b
2526	chr3R	4366736	4366786	chr3R	4375144	4375194	roo	15	8408	6.5	7.0	6.8	1.9	8458	chr3R	4366736	3` UTR	CG1090 +	chr3R	4370965	intergenic	not near genes	chr3R	4375194	5` UTR	CR44922 +	chr3R_15_4370001	chr3R_4370001	RAL-340_100b
2527	chr3R	4408388	4408436	chr3R	4412717	4412765	Juan	15	4326	17.5	9.0	13.2	1.1	4377	chr3R	4408388	intron	CG32944 -	chr3R	4410576	intron	CG32944 -	chr3R	4412765	intron	CG32944 -	chr3R_15_4410001	chr3R_4410001	RAL-340_100b
2535	chr3R	4753224	4753244	chr3R	4757552	4757569	F-element	4	4327	12.0	9.0	10.5	0.3	4345	chr3R	4753224	intron,intron	atms +,CG44098 -	chr3R	4755396	intron,intron	atms +,CG44098 -	chr3R	4757569	intron,exon	atms +,CG44098 -	chr3R_4_4755001	chr3R_4755001	RAL-340_100b
2536	chr3R	4753253	4753265	chr3R	4757546	4757553	F-element	8	4309	9.5	8.0	8.8	0.8	4300	chr3R	4753253	intron,intron	atms +,CG44098 -	chr3R	4755403	intron,intron	atms +,CG44098 -	chr3R	4757553	intron,exon	atms +,CG44098 -	chr3R_8_4755001	chr3R_4755001	RAL-340_100b
2542	chr3R	4887453	4887468	chr3R	4894855	4894870	rover	7	7402	17.5	8.5	13.0	0.5	7417	chr3R	4887453	intergenic	not near genes	chr3R	4891162	intergenic	not near genes	chr3R	4894870	intergenic	not near genes	chr3R_7_4890001	chr3R_4890001	RAL-340_100b
2543	chr3R	4887489	4887491	chr3R	4894854	4894893	rover	4	7382	12.5	8.5	10.5	0.3	7404	chr3R	4887489	intergenic	not near genes	chr3R	4891191	intergenic	not near genes	chr3R	4894893	intergenic	not near genes	chr3R_4_4890001	chr3R_4890001	RAL-340_100b
2544	chr3R	4887492	4887508	chr3R	4894894	4894910	rover	6	7401	8.0	19.5	13.8	0.4	7418	chr3R	4887492	intergenic	not near genes	chr3R	4891201	intergenic	not near genes	chr3R	4894910	intergenic	not near genes	chr3R_6_4890001	chr3R_4890001	RAL-340_100b
2554	chr3R	5045838	5045878	chr3R	5052955	5053005	HMS-Beagle	12	7126	6.0	5.5	5.8	1.8	7167	chr3R	5045838	intron	CR43635 -	chr3R	5049422	intergenic	not near genes	chr3R	5053005	intergenic	CR45588 -	chr3R_12_5045001	chr3R_5045001	RAL-340_100b
2555	chr3R	5067956	5068013	chr3R	5073498	5073524	mdg3	28	5537	6.0	6.0	6.0	4.0	5568	chr3R	5067956	intergenic	not near genes	chr3R	5070740	intergenic	not near genes	chr3R	5073524	intergenic	not near genes	chr3R_28_5070001	chr3R_5070001	RAL-340_100b
2564	chr3R	5338259	5338266	chr3R	5343607	5343619	Rt1c	4	5352	32.0	11.5	21.8	0.2	5360	chr3R	5338259	intron	mtd -	chr3R	5340939	intron	mtd -	chr3R	5343619	intron	mtd -	chr3R_4_5340001	chr3R_5340001	RAL-340_100b
2565	chr3R	5338269	5338288	chr3R	5343622	5343641	Rt1c	9	5353	26.5	19.0	22.8	0.4	5372	chr3R	5338269	intron	mtd -	chr3R	5340955	intron	mtd -	chr3R	5343641	intron	mtd -	chr3R_9_5340001	chr3R_5340001	RAL-340_100b
2566	chr3R	5338290	5338309	chr3R	5343628	5343662	Rt1c	15	5349	21.0	20.0	20.5	0.7	5372	chr3R	5338290	intron	mtd -	chr3R	5340976	intron	mtd -	chr3R	5343662	intron	mtd -	chr3R_15_5340001	chr3R_5340001	RAL-340_100b
2567	chr3R	5338310	5338314	chr3R	5343623	5343667	Rt1c	6	5339	20.0	19.0	19.5	0.3	5357	chr3R	5338310	intron	mtd -	chr3R	5340988	intron	mtd -	chr3R	5343667	intron	mtd -	chr3R_6_5340001	chr3R_5340001	RAL-340_100b
2569	chr3R	5445937	5445990	chr3R	5452422	5452440	Burdock	14	6478	6.5	6.5	6.5	1.9	6503	chr3R	5445937	intron	CG14669 +	chr3R	5449188	intron	CG14669 +	chr3R	5452440	intron	CG14669 +	chr3R_14_5445001	chr3R_5445001	RAL-340_100b
2578	chr3R	5745991	5745995	chr3R	5746257	5746261	pogo	4	266	25.0	17.0	21.0	0.2	270	chr3R	5745991	3` UTR	Madm +	chr3R	5746126	3` UTR	Madm +	chr3R	5746261	3` UTR	Madm +	chr3R_4_5745001	chr3R_5745001	RAL-340_100b
2579	chr3R	5745997	5746005	chr3R	5746255	5746256	pogo	4	260	21.0	16.0	18.5	0.2	259	chr3R	5745997	3` UTR	Madm +	chr3R	5746126	3` UTR	Madm +	chr3R	5746256	3` UTR	Madm +	chr3R_4_5745001	chr3R_5745001	RAL-340_100b
2580	chr3R	5746008	5746041	chr3R	5746254	5746307	pogo	25	262	11.5	15.0	13.2	1.8	299	chr3R	5746008	3` UTR	Madm +	chr3R	5746158	3` UTR	Madm +	chr3R	5746307	3` UTR	Madm +	chr3R_25_5745001	chr3R_5745001	RAL-340_100b
2581	chr3R	5746990	5746997	chr3R	5753206	5753213	diver	4	6216	30.5	9.0	19.8	0.2	6223	chr3R	5746990	intergenic	Madm +	chr3R	5750102	intergenic	not near genes	chr3R	5753213	intergenic	CG2091 -	chr3R_4_5750001	chr3R_5750001	RAL-340_100b
2582	chr3R	5746998	5747039	chr3R	5753205	5753255	diver	17	6213	16.5	9.0	12.8	1.2	6257	chr3R	5746998	intergenic	Madm +	chr3R	5750126	intergenic	not near genes	chr3R	5753255	intergenic	CG2091 -	chr3R_17_5750001	chr3R_5750001	RAL-340_100b
2584	chr3R	5809087	5809094	chr3R	5809353	5809360	pogo	7	266	33.5	7.5	20.5	0.3	273	chr3R	5809087	3` UTR	CG11000 +	chr3R	5809224	3` UTR	CG11000 +	chr3R	5809360	3` UTR	CG11000 +	chr3R_7_5805001	chr3R_5805001	RAL-340_100b
2585	chr3R	5809095	5809105	chr3R	5809361	5809371	pogo	8	266	28.0	11.5	19.8	0.4	276	chr3R	5809095	3` UTR	CG11000 +	chr3R	5809233	3` UTR	CG11000 +	chr3R	5809371	3` UTR	CG11000 +	chr3R_8_5805001	chr3R_5805001	RAL-340_100b
2586	chr3R	5809111	5809126	chr3R	5809357	5809392	pogo	17	263	23.0	8.5	15.8	1.0	281	chr3R	5809111	3` UTR	CG11000 +	chr3R	5809252	3` UTR	CG11000 +	chr3R	5809392	3` UTR	CG11000 +	chr3R_17_5805001	chr3R_5805001	RAL-340_100b
2587	chr3R	5809129	5809138	chr3R	5809395	5809404	pogo	4	265	16.5	26.5	21.5	0.2	275	chr3R	5809129	3` UTR	CG11000 +	chr3R	5809266	3` UTR	CG11000 +	chr3R	5809404	3` UTR	CG11000 +	chr3R_4_5805001	chr3R_5805001	RAL-340_100b
2588	chr3R	5822357	5822406	chr3R	5823549	5823598	1360	17	1189	8.5	8.0	8.2	1.8	1241	chr3R	5822357	3` UTR	CG2023 -	chr3R	5822978	3` UTR	CG2023 -	chr3R	5823598	3` UTR	CG2023 -	chr3R_17_5820001	chr3R_5820001	RAL-340_100b
2592	chr3R	5927550	5927559	chr3R	5927809	5927824	pogo	4	262	10.5	6.0	8.2	0.4	274	chr3R	5927550	intron	CG34113 -	chr3R	5927687	intron	CG34113 -	chr3R	5927824	intron	CG34113 -	chr3R_4_5925001	chr3R_5925001	RAL-340_100b
2593	chr3R	5927561	5927591	chr3R	5927800	5927806	pogo	13	248	4.0	4.0	4.0	2.6	245	chr3R	5927561	intron	CG34113 -	chr3R	5927684	intron	CG34113 -	chr3R	5927806	intron	CG34113 -	chr3R_13_5925001	chr3R_5925001	RAL-340_100b
2598	chr3R	6015937	6015994	chr3R	6024443	6024500	Tirant	44	8501	5.0	21.0	13.0	3.1	8563	chr3R	6015937	intergenic	not near genes	chr3R	6020218	intergenic	not near genes	chr3R	6024500	intergenic	not near genes	chr3R_44_6020001	chr3R_6020001	RAL-340_100b
2603	chr3R	6121172	6121181	chr3R	6121415	6121424	BS	4	243	0.0	8.0	4.0	0.8	252	chr3R	6121172	intergenic	not near genes	chr3R	6121298	intergenic	not near genes	chr3R	6121424	intergenic	not near genes	chr3R_4_6120001	chr3R_6120001	RAL-340_100b
2604	chr3R	6158509	6158536	chr3R	6167105	6167127	Tirant	10	8605	13.0	11.0	12.0	0.8	8618	chr3R	6158509	intergenic	not near genes	chr3R	6162818	intergenic	not near genes	chr3R	6167127	intergenic	CG1077 +	chr3R_10_6160001	chr3R_6160001	RAL-340_100b
2605	chr3R	6175155	6175172	chr3R	6182452	6182469	HMS-Beagle2	5	7297	14.5	11.0	12.8	0.4	7314	chr3R	6175155	intergenic	Osi1 +	chr3R	6178812	intron	CR45194 +	chr3R	6182469	intergenic	CR45194 +	chr3R_5_6175001	chr3R_6175001	RAL-340_100b
2606	chr3R	6175176	6175201	chr3R	6182446	6182480	HMS-Beagle2	12	7277	6.5	10.5	8.5	1.3	7304	chr3R	6175176	intergenic	Osi1 +	chr3R	6178828	intron	CR45194 +	chr3R	6182480	intergenic	CR45194 +	chr3R_12_6175001	chr3R_6175001	RAL-340_100b
2617	chr3R	6510003	6510022	chr3R	6515109	6515123	jockey	10	5105	21.5	7.0	14.2	0.7	5120	chr3R	6510003	intergenic	not near genes	chr3R	6512563	intergenic	not near genes	chr3R	6515123	intergenic	not near genes	chr3R_10_6510001	chr3R_6510001	RAL-340_100b
2618	chr3R	6510025	6510047	chr3R	6515106	6515145	jockey	10	5102	15.5	6.0	10.8	0.8	5120	chr3R	6510025	intergenic	not near genes	chr3R	6512585	intergenic	not near genes	chr3R	6515145	intergenic	not near genes	chr3R_10_6510001	chr3R_6510001	RAL-340_100b
2634	chr3R	6737490	6737529	chr3R	6739288	6739299	Doc	9	1792	8.0	8.5	8.2	1.0	1809	chr3R	6737490	intron	pb -	chr3R	6738394	intron	pb -	chr3R	6739299	intron	pb -	chr3R_9_6735001	chr3R_6735001	RAL-340_100b
2646	chr3R	6997077	6997089	chr3R	9418239	9418239	F-element	8	2421158	27.0	116.5	71.8	0.1	2421162	chr3R	6997077	intron	Antp -	chr3R	8207658	intergenic	not near genes	chr3R	9418239	intron	ps +	chr3R_8_8205001	chr3R_8205001	RAL-340_100b
2665	chr3R	7641036	7641076	chr3R	7642625	7642664	hobo	11	1587	9.0	6.0	7.5	1.3	1628	chr3R	7641036	intergenic	not near genes	chr3R	7641850	intergenic	not near genes	chr3R	7642664	intergenic	not near genes	chr3R_11_7640001	chr3R_7640001	RAL-340_100b
2666	chr3R	7641078	7641093	chr3R	7642623	7642682	hobo	10	1580	5.5	5.5	5.5	1.5	1604	chr3R	7641078	intergenic	not near genes	chr3R	7641880	intergenic	not near genes	chr3R	7642682	intergenic	not near genes	chr3R_10_7640001	chr3R_7640001	RAL-340_100b
2671	chr3R	7729456	7729495	chr3R	7737404	7737458	Stalker2	16	7962	10.0	4.0	7.0	2.0	8002	chr3R	7729456	intergenic	not near genes	chr3R	7733457	intergenic	not near genes	chr3R	7737458	intergenic	not near genes	chr3R_16_7730001	chr3R_7730001	RAL-340_100b
2682	chr3R	7973299	7973335	chr3R	7974386	7974414	1360	14	1085	13.5	9.5	11.5	1.1	1115	chr3R	7973299	intergenic	not near genes	chr3R	7973856	intergenic	not near genes	chr3R	7974414	3` UTR	CD98hc -	chr3R_14_7970001	chr3R_7970001	RAL-340_100b
2686	chr3R	8090541	8090566	chr3R	8094043	8094068	297	18	3499	0.5	16.0	8.2	2.0	3527	chr3R	8090541	intergenic	CR44330 +	chr3R	8092304	intergenic	not near genes	chr3R	8094068	intergenic	CG7900 +	chr3R_18_8090001	chr3R_8090001	RAL-340_100b
2687	chr3R	8094387	8094399	chr3R	8099717	8099729	Transpac	10	5328	14.5	9.5	12.0	0.8	5342	chr3R	8094387	intron	CG7900 +	chr3R	8097058	intron	CG7900 +	chr3R	8099729	intron	CG7900 +	chr3R_10_8095001	chr3R_8095001	RAL-340_100b
2688	chr3R	8094400	8094429	chr3R	8099711	8099759	Transpac	7	5325	10.0	7.0	8.5	0.7	5359	chr3R	8094400	intron	CG7900 +	chr3R	8097080	intron	CG7900 +	chr3R	8099759	intron	CG7900 +	chr3R_7_8095001	chr3R_8095001	RAL-340_100b
2689	chr3R	8101748	8101784	chr3R	8104857	8104861	G2	14	3101	6.0	12.0	9.0	1.4	3113	chr3R	8101748	exon	CG7900 +	chr3R	8103304	intron	CG7900 +	chr3R	8104861	3` UTR	CG7900 +	chr3R_14_8100001	chr3R_8100001	RAL-340_100b
2690	chr3R	8207527	8207582	chr3R	8208398	8208452	F-element	23	863	8.0	7.0	7.5	2.7	925	chr3R	8207527	intergenic	not near genes	chr3R	8207990	intergenic	not near genes	chr3R	8208452	intergenic	not near genes	chr3R_23_8205001	chr3R_8205001	RAL-340_100b
2700	chr3R	8402995	8403038	chr3R	8412171	8412222	roo	25	9183	16.5	12.0	14.2	1.6	9227	chr3R	8402995	intron	CG45263 -	chr3R	8407608	intron	CG45263 -	chr3R	8412222	intron	CG45263 -	chr3R_25_8405001	chr3R_8405001	RAL-340_100b
2706	chr3R	8570455	8570508	chr3R	8575116	8575154	HMS-Beagle	20	4658	9.5	17.0	13.2	1.4	4699	chr3R	8570455	intergenic	not near genes	chr3R	8572804	intergenic	not near genes	chr3R	8575154	intergenic	not near genes	chr3R_20_8570001	chr3R_8570001	RAL-340_100b
2708	chr3R	8601764	8601776	chr3R	8610942	8610954	roo	6	9177	22.0	14.0	18.0	0.3	9190	chr3R	8601764	intron	5-HT2B +	chr3R	8606359	intron	5-HT2B +	chr3R	8610954	intron	5-HT2B +	chr3R_6_8605001	chr3R_8605001	RAL-340_100b
2709	chr3R	8601777	8601798	chr3R	8610921	8610976	roo	11	9171	10.0	10.0	10.0	1.0	9199	chr3R	8601777	intron	5-HT2B +	chr3R	8606376	intron	5-HT2B +	chr3R	8610976	intron	5-HT2B +	chr3R_11_8605001	chr3R_8605001	RAL-340_100b
2715	chr3R	8707334	8707385	chr3R	8709800	8709836	jockey	60	2462	11.0	33.5	22.2	2.6	2502	chr3R	8707334	intergenic	not near genes	chr3R	8708585	intergenic	not near genes	chr3R	8709836	intergenic	not near genes	chr3R_60_8705001	chr3R_8705001	RAL-340_100b
2716	chr3R	8894847	8894881	chr3R	8896028	8896062	1360	18	1178	9.0	14.0	11.5	1.4	1215	chr3R	8894847	intron	pyd -	chr3R	8895454	intron	pyd -	chr3R	8896062	intron	pyd -	chr3R_18_8895001	chr3R_8895001	RAL-340_100b
2717	chr3R	8894882	8894897	chr3R	8896032	8896078	1360	13	1176	7.0	16.0	11.5	1.0	1196	chr3R	8894882	intron	pyd -	chr3R	8895480	intron	pyd -	chr3R	8896078	intron	pyd -	chr3R_13_8895001	chr3R_8895001	RAL-340_100b
2718	chr3R	8894898	8894903	chr3R	8896027	8896084	1360	6	1172	5.5	14.0	9.8	0.6	1186	chr3R	8894898	intron	pyd -	chr3R	8895491	intron	pyd -	chr3R	8896084	intron	pyd -	chr3R_6_8895001	chr3R_8895001	RAL-340_100b
2726	chr3R	9319563	9319602	chr3R	9320016	9320062	jockey	25	458	9.5	16.5	13.0	1.8	499	chr3R	9319563	intron	CG8861 -	chr3R	9319812	intron	CG8861 -	chr3R	9320062	intron	CG8861 -	chr3R_25_9315001	chr3R_9315001	RAL-340_100b
2728	chr3R	9361807	9361837	chr3R	9362056	9362092	pogo	15	261	17.5	7.0	12.2	1.1	285	chr3R	9361807	3` UTR	CG45050 +	chr3R	9361950	3` UTR	CG45050 +	chr3R	9362092	3` UTR	CG45050 +	chr3R_15_9360001	chr3R_9360001	RAL-340_100b
2743	chr3R	10231759	10231768	chr3R	10237361	10237370	mdg3	4	5602	17.0	7.0	12.0	0.3	5611	chr3R	10231759	intron	CG42795 +	chr3R	10234564	intron	CG42795 +	chr3R	10237370	intron	CG42795 +	chr3R_4_10230001	chr3R_10230001	RAL-340_100b
2744	chr3R	10231773	10231814	chr3R	10237360	10237416	mdg3	11	5599	7.0	6.5	6.8	1.4	5643	chr3R	10231773	intron	CG42795 +	chr3R	10234594	intron	CG42795 +	chr3R	10237416	intron	CG42795 +	chr3R_11_10230001	chr3R_10230001	RAL-340_100b
2745	chr3R	10255368	10255385	chr3R	10260823	10260850	I-element	8	5464	9.5	5.5	7.5	0.9	5482	chr3R	10255368	3` UTR	Sirt6 -	chr3R	10258109	intron	Sirt6 -	chr3R	10260850	exon	Sirt6 -	chr3R_8_10255001	chr3R_10255001	RAL-340_100b
2757	chr3R	10804169	10804196	chr3R	10811726	10811752	17.6	10	7556	11.0	6.0	8.5	1.1	7583	chr3R	10804169	intergenic	CG14692 -	chr3R	10807960	intergenic	not near genes	chr3R	10811752	3` UTR	CG14693 -	chr3R_10_10805001	chr3R_10805001	RAL-340_100b
2758	chr3R	10804198	10804207	chr3R	10811704	10811733	17.6	4	7536	7.5	4.0	5.8	0.6	7535	chr3R	10804198	intergenic	CG14692 -	chr3R	10807966	intergenic	not near genes	chr3R	10811733	3` UTR	CG14693 -	chr3R_4_10805001	chr3R_10805001	RAL-340_100b
2763	chr3R	10957854	10957885	chr3R	10963256	10963298	Rt1c	7	5409	7.5	9.5	8.5	0.7	5444	chr3R	10957854	intergenic	not near genes	chr3R	10960576	intergenic	not near genes	chr3R	10963298	intergenic	not near genes	chr3R_7_10960001	chr3R_10960001	RAL-340_100b
2777	chr3R	11247218	11247227	chr3R	11247324	11247332	INE-1	11	106	23.0	5.5	14.2	0.7	114	chr3R	11247218	intergenic	CG5214 +,CR43283 -	chr3R	11247275	intergenic	CR43283 -,CG5214 +	chr3R	11247332	intergenic	CR43283 -,CG5214 +	chr3R_11_11245001	chr3R_11245001	RAL-340_100b
2787	chr3R	11379212	11379261	chr3R	11388392	11388430	roo	42	9179	31.0	12.5	21.8	1.8	9218	chr3R	11379212	intron	pros +	chr3R	11383821	intron	pros +	chr3R	11388430	intron	pros +	chr3R_42_11380001	chr3R_11380001	RAL-340_100b
2798	chr3R	11841038	11841047	chr3R	11846254	11846263	BS	4	5216	27.0	9.5	18.2	0.2	5225	chr3R	11841038	intron	CG6959 -	chr3R	11843650	intron	CG6959 -	chr3R	11846263	intron	CG6959 -	chr3R_4_11840001	chr3R_11840001	RAL-340_100b
2799	chr3R	11841050	11841093	chr3R	11846250	11846284	BS	20	5210	8.5	9.5	9.0	2.0	5234	chr3R	11841050	intron	CG6959 -	chr3R	11843667	intron	CG6959 -	chr3R	11846284	intron	CG6959 -	chr3R_20_11840001	chr3R_11840001	RAL-340_100b
2804	chr3R	11957832	11957877	chr3R	11958138	11958169	S-element	20	300	8.0	1.0	4.5	3.6	337	chr3R	11957832	intergenic	not near genes	chr3R	11958000	intergenic	not near genes	chr3R	11958169	intergenic	not near genes	chr3R_20_11955001	chr3R_11955001	RAL-340_100b
2805	chr3R	12022858	12022915	chr3R	12025060	12025117	pogo	20	2201	4.0	12.0	8.0	2.2	2259	chr3R	12022858	intergenic	not near genes	chr3R	12023988	intergenic	not near genes	chr3R	12025117	intergenic	not near genes	chr3R_20_12020001	chr3R_12020001	RAL-340_100b
2832	chr3R	12864587	12864592	chr3R	12865097	12865102	roo	4	510	0.0	5.0	2.5	1.1	515	chr3R	12864587	intergenic	not near genes	chr3R	12864844	intergenic	not near genes	chr3R	12865102	intergenic	not near genes	chr3R_4_12860001	chr3R_12860001	RAL-340_100b
2835	chr3R	12920129	12920174	chr3R	12925357	12925402	copia	16	5222	5.5	9.5	7.5	1.9	5273	chr3R	12920129	intron	beat-Vb +	chr3R	12922766	intron	beat-Vb +	chr3R	12925402	intron	beat-Vb +	chr3R_16_12920001	chr3R_12920001	RAL-340_100b
2839	chr3R	12998091	12998099	chr3R	30529755	30529770	mdg1	4	17531670	44.0	37.5	40.8	0.1	17531679	chr3R	12998091	5` UTR	CG7518 +	chr3R	21763930	intron	CG42335 +	chr3R	30529770	intron	CR45552 -	chr3R_4_21760001	chr3R_21760001	RAL-340_100b
2852	chr3R	13135805	13135857	chr3R	13138005	13138057	pogo	23	2199	14.0	9.0	11.5	1.8	2252	chr3R	13135805	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13136931	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13138057	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R_23_13135001	chr3R_13135001	RAL-340_100b
2853	chr3R	13143007	13143049	chr3R	13148609	13148646	mdg3	23	5598	15.5	11.5	13.5	1.6	5639	chr3R	13143007	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13145826	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13148646	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R_23_13145001	chr3R_13145001	RAL-340_100b
2854	chr3R	13143054	13143057	chr3R	13148640	13148659	mdg3	7	5596	14.0	21.5	17.8	0.4	5605	chr3R	13143054	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13145856	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13148659	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R_7_13145001	chr3R_13145001	RAL-340_100b
2871	chr3R	13517205	13517256	chr3R	13520047	13520098	jockey	9	2839	12.5	0.5	6.5	1.2	2893	chr3R	13517205	intergenic	not near genes	chr3R	13518652	intergenic	not near genes	chr3R	13520098	intergenic	not near genes	chr3R_9_13515001	chr3R_13515001	RAL-340_100b
2903	chr3R	14021624	14021679	chr3R	14023466	14023521	S-element	19	1838	10.0	6.0	8.0	2.1	1897	chr3R	14021624	intron	rdx -	chr3R	14022572	intron	rdx -	chr3R	14023521	intron	rdx -	chr3R_19_14020001	chr3R_14020001	RAL-340_100b
2915	chr3R	14180786	14180834	chr3R	14185576	14185624	F-element	9	4790	8.0	9.5	8.8	0.9	4838	chr3R	14180786	intron	Dop1R1 -	chr3R	14183205	intron	Dop1R1 -	chr3R	14185624	intron	Dop1R1 -	chr3R_9_14180001	chr3R_14180001	RAL-340_100b
2916	chr3R	14194428	14194455	chr3R	14203582	14203629	roo	5	9170	7.5	5.0	6.2	0.7	9201	chr3R	14194428	intron	Dop1R1 -	chr3R	14199028	intron	Dop1R1 -	chr3R	14203629	intron	Dop1R1 -	chr3R_5_14195001	chr3R_14195001	RAL-340_100b
2917	chr3R	14246376	14246399	chr3R	14247892	14247904	jockey	12	1515	12.0	12.0	12.0	0.9	1528	chr3R	14246376	intergenic	not near genes	chr3R	14247140	intergenic	not near genes	chr3R	14247904	intergenic	not near genes	chr3R_12_14245001	chr3R_14245001	RAL-340_100b
2918	chr3R	14246402	14246418	chr3R	14247882	14247934	jockey	12	1509	9.0	7.5	8.2	1.3	1532	chr3R	14246402	intergenic	not near genes	chr3R	14247168	intergenic	not near genes	chr3R	14247934	intergenic	not near genes	chr3R_12_14245001	chr3R_14245001	RAL-340_100b
2946	chr3R	15041405	15041419	chr3R	15045208	15045228	Doc	8	3806	0.0	8.0	4.0	1.6	3823	chr3R	15041405	intergenic	not near genes	chr3R	15043316	intergenic	not near genes	chr3R	15045228	intergenic	not near genes	chr3R_8_15040001	chr3R_15040001	RAL-340_100b
2953	chr3R	15079787	15079837	chr3R	15080053	15080057	pogo	24	258	8.0	4.0	6.0	3.4	270	chr3R	15079787	3` UTR	CG6966 -	chr3R	15079922	3` UTR	CG6966 -	chr3R	15080057	3` UTR	CG6966 -	chr3R_24_15075001	chr3R_15075001	RAL-340_100b
2955	chr3R	15102491	15102530	chr3R	15109774	15109785	412	6	7276	4.0	3.5	3.8	1.2	7294	chr3R	15102491	intron	CG42788 -	chr3R	15106138	intron	CG42788 -	chr3R	15109785	intron	CG42788 -	chr3R_6_15105001	chr3R_15105001	RAL-340_100b
2958	chr3R	15162522	15162559	chr3R	15167315	15167352	F-element	13	4793	5.5	6.0	5.8	1.9	4830	chr3R	15162522	intron	Gyc88E +	chr3R	15164937	intron	Gyc88E +	chr3R	15167352	intron	Gyc88E +	chr3R_13_15160001	chr3R_15160001	RAL-340_100b
2974	chr3R	15601143	15601195	chr3R	15608690	15608742	412	15	7543	8.0	10.0	9.0	1.5	7599	chr3R	15601143	intergenic	not near genes	chr3R	15604942	intergenic	not near genes	chr3R	15608742	intergenic	not near genes	chr3R_15_15600001	chr3R_15600001	RAL-340_100b
2975	chr3R	15618742	15618764	chr3R	15626241	15626263	blood	9	7498	2.5	10.5	6.5	1.2	7521	chr3R	15618742	intergenic	not near genes	chr3R	15622502	intergenic	not near genes	chr3R	15626263	intergenic	not near genes	chr3R_9_15620001	chr3R_15620001	RAL-340_100b
2979	chr3R	15735217	15735234	chr3R	15739962	15739979	F-element	5	4745	10.5	7.5	9.0	0.5	4762	chr3R	15735217	intergenic	not near genes	chr3R	15737598	intergenic	not near genes	chr3R	15739979	intergenic	not near genes	chr3R_5_15735001	chr3R_15735001	RAL-340_100b
2997	chr3R	16756294	16756345	chr3R	16762510	16762551	diver	18	6213	12.0	4.0	8.0	2.0	6257	chr3R	16756294	intron	bxd -	chr3R	16759422	intron	bxd -	chr3R	16762551	intron	bxd -	chr3R_18_16755001	chr3R_16755001	RAL-340_100b
3016	chr3R	17294646	17294674	chr3R	17295099	17295127	BS	15	452	12.5	9.5	11.0	1.2	481	chr3R	17294646	intergenic	not near genes	chr3R	17294886	intergenic	not near genes	chr3R	17295127	intergenic	not near genes	chr3R_15_17290001	chr3R_17290001	RAL-340_100b
3017	chr3R	17294676	17294697	chr3R	17295094	17295109	BS	9	440	6.0	8.0	7.0	1.1	433	chr3R	17294676	intergenic	not near genes	chr3R	17294892	intergenic	not near genes	chr3R	17295109	intergenic	not near genes	chr3R_9_17290001	chr3R_17290001	RAL-340_100b
3019	chr3R	17346675	17346719	chr3R	17348263	17348307	F-element	11	1586	4.0	8.0	6.0	1.6	1632	chr3R	17346675	intron	beat-IIa -	chr3R	17347491	intron	beat-IIa -	chr3R	17348307	intron	beat-IIa -	chr3R_11_17345001	chr3R_17345001	RAL-340_100b
3032	chr3R	17509235	17509247	chr3R	17516808	17516815	412	4	7572	17.0	20.5	18.8	0.2	7580	chr3R	17509235	intergenic	not near genes	chr3R	17513025	intergenic	not near genes	chr3R	17516815	intergenic	not near genes	chr3R_4_17510001	chr3R_17510001	RAL-340_100b
3035	chr3R	17591278	17591321	chr3R	17591739	17591751	F-element	20	452	10.0	11.5	10.8	1.7	473	chr3R	17591278	intergenic	not near genes	chr3R	17591514	intergenic	not near genes	chr3R	17591751	intergenic	not near genes	chr3R_20_17590001	chr3R_17590001	RAL-340_100b
3036	chr3R	17638298	17638317	chr3R	17638809	17638818	roo	9	510	11.0	5.5	8.2	1.0	520	chr3R	17638298	intron	CG43175 +	chr3R	17638558	intron	CG43175 +	chr3R	17638818	intron,intron	CG43175 +,CR45222 +	chr3R_9_17635001	chr3R_17635001	RAL-340_100b
3037	chr3R	17638318	17638345	chr3R	17638808	17638830	roo	12	505	7.5	5.5	6.5	1.6	512	chr3R	17638318	intron	CG43175 +	chr3R	17638574	intron	CG43175 +	chr3R	17638830	intron,intron	CG43175 +,CR45222 +	chr3R_12_17635001	chr3R_17635001	RAL-340_100b
3055	chr3R	17925832	17925862	chr3R	17927324	17927354	hobo	24	1491	15.0	24.0	19.5	1.2	1522	chr3R	17925832	intron	cpo +	chr3R	17926593	intron	cpo +	chr3R	17927354	intron	cpo +	chr3R_24_17925001	chr3R_17925001	RAL-340_100b
3056	chr3R	17925863	17925869	chr3R	17927322	17927361	hobo	6	1485	13.0	22.0	17.5	0.3	1498	chr3R	17925863	intron	cpo +	chr3R	17926612	intron	cpo +	chr3R	17927361	intron	cpo +	chr3R_6_17925001	chr3R_17925001	RAL-340_100b
3057	chr3R	17925870	17925883	chr3R	17927317	17927365	hobo	11	1483	9.0	20.0	14.5	0.7	1495	chr3R	17925870	intron	cpo +	chr3R	17926618	intron	cpo +	chr3R	17927365	intron	cpo +	chr3R_11_17925001	chr3R_17925001	RAL-340_100b
3060	chr3R	18061574	18061591	chr3R	18063162	18063183	F-element	14	1591	3.5	12.5	8.0	1.6	1609	chr3R	18061574	intergenic	not near genes	chr3R	18062378	intergenic	not near genes	chr3R	18063183	intergenic	not near genes	chr3R_14_18060001	chr3R_18060001	RAL-340_100b
3061	chr3R	18061592	18061607	chr3R	18063155	18063200	F-element	9	1585	2.5	10.0	6.2	1.2	1608	chr3R	18061592	intergenic	not near genes	chr3R	18062396	intergenic	not near genes	chr3R	18063200	intergenic	not near genes	chr3R_9_18060001	chr3R_18060001	RAL-340_100b
3075	chr3R	18331760	18331768	chr3R	18333279	18333285	hopper2	5	1518	20.5	2.5	11.5	0.4	1525	chr3R	18331760	3` UTR	CG15803 -	chr3R	18332522	intron	CG15803 -	chr3R	18333285	3` UTR	CG15803 -	chr3R_5_18330001	chr3R_18330001	RAL-340_100b
3086	chr3R	18606490	18606525	chr3R	18610736	18610782	F-element	18	4251	13.0	7.0	10.0	1.6	4292	chr3R	18606490	intron,intron	qin +,CG14304 -	chr3R	18608636	intron,intron	qin +,CG14304 -	chr3R	18610782	intron,intron	qin +,CG14304 -	chr3R_18_18605001	chr3R_18605001	RAL-340_100b
3109	chr3R	19193002	19193009	chr3R	19197292	19197338	F-element	10	4314	8.0	14.5	11.2	0.8	4336	chr3R	19193002	intron	CG31475 +	chr3R	19195170	intron	CG31475 +	chr3R	19197338	intron	CG31475 +	chr3R_10_19195001	chr3R_19195001	RAL-340_100b
3131	chr3R	20109538	20109554	chr3R	20114769	20114785	copia	7	5231	13.0	7.0	10.0	0.6	5247	chr3R	20109538	intergenic	not near genes	chr3R	20112162	intergenic	not near genes	chr3R	20114785	intergenic	CG10887 +	chr3R_7_20110001	chr3R_20110001	RAL-340_100b
3132	chr3R	20109555	20109565	chr3R	20114742	20114796	copia	11	5221	10.0	2.0	6.0	1.6	5241	chr3R	20109555	intergenic	not near genes	chr3R	20112176	intergenic	not near genes	chr3R	20114796	intergenic	CG10887 +	chr3R_11_20110001	chr3R_20110001	RAL-340_100b
3134	chr3R	20156672	20156694	chr3R	20165867	20165889	roo	6	9195	13.0	14.5	13.8	0.4	9217	chr3R	20156672	intergenic	not near genes	chr3R	20161280	intergenic	not near genes	chr3R	20165889	intergenic	not near genes	chr3R_6_20160001	chr3R_20160001	RAL-340_100b
3135	chr3R	20156695	20156719	chr3R	20165864	20165914	roo	17	9190	7.0	13.5	10.2	1.5	9219	chr3R	20156695	intergenic	not near genes	chr3R	20161304	intergenic	not near genes	chr3R	20165914	intergenic	not near genes	chr3R_17_20160001	chr3R_20160001	RAL-340_100b
3145	chr3R	20245268	20245306	chr3R	20248902	20248941	F-element	12	3635	9.5	3.0	6.2	1.7	3673	chr3R	20245268	3` UTR	Nlg4 +	chr3R	20247104	intergenic	not near genes	chr3R	20248941	intergenic	not near genes	chr3R_12_20245001	chr3R_20245001	RAL-340_100b
3147	chr3R	20266493	20266544	chr3R	20272989	20273040	Burdock	31	6489	8.0	13.0	10.5	2.7	6547	chr3R	20266493	intron	cic +	chr3R	20269766	intron	cic +	chr3R	20273040	intron	cic +	chr3R_31_20265001	chr3R_20265001	RAL-340_100b
3149	chr3R	20330976	20331032	chr3R	20331487	20331542	roo	13	511	7.5	3.0	5.2	2.1	566	chr3R	20330976	intergenic	Sirt2 +	chr3R	20331259	intergenic	Sirt2 +	chr3R	20331542	intergenic	not near genes	chr3R_13_20330001	chr3R_20330001	RAL-340_100b
3154	chr3R	20506571	20506610	chr3R	20507395	20507438	BS	15	824	1.5	5.5	3.5	3.3	867	chr3R	20506571	intergenic	Or92a +	chr3R	20507004	intergenic	CG4288 -	chr3R	20507438	3` UTR	CG4288 -	chr3R_15_20505001	chr3R_20505001	RAL-340_100b
3155	chr3R	20512991	20513015	chr3R	20515719	20515738	opus	4	2727	3.5	5.0	4.2	0.8	2747	chr3R	20512991	intergenic	not near genes	chr3R	20514364	intergenic	not near genes	chr3R	20515738	intergenic	not near genes	chr3R_4_20510001	chr3R_20510001	RAL-340_100b
3181	chr3R	21141656	21141680	chr3R	21150157	21150186	Tirant	21	8502	18.0	12.0	15.0	1.3	8530	chr3R	21141656	intron	SNF4Agamma +	chr3R	21145921	intron	SNF4Agamma +	chr3R	21150186	intron	SNF4Agamma +	chr3R_21_21145001	chr3R_21145001	RAL-340_100b
3182	chr3R	21141682	21141692	chr3R	21150153	21150183	Tirant	5	8488	14.0	10.5	12.2	0.4	8501	chr3R	21141682	intron	SNF4Agamma +	chr3R	21145932	intron	SNF4Agamma +	chr3R	21150183	intron	SNF4Agamma +	chr3R_5_21145001	chr3R_21145001	RAL-340_100b
3201	chr3R	21608988	21608995	chr3R	21611647	21611654	NOF	5	2658	25.0	12.0	18.5	0.3	2666	chr3R	21608988	intron	InR -	chr3R	21610321	intron	InR -	chr3R	21611654	intron	InR -	chr3R_5_21610001	chr3R_21610001	RAL-340_100b
3202	chr3R	21608996	21609007	chr3R	21611646	21611657	NOF	10	2654	20.5	11.5	16.0	0.6	2661	chr3R	21608996	intron	InR -	chr3R	21610326	intron	InR -	chr3R	21611657	intron	InR -	chr3R_10_21610001	chr3R_21610001	RAL-340_100b
3203	chr3R	21609019	21609036	chr3R	21611648	21611695	NOF	15	2654	11.5	12.0	11.8	1.2	2676	chr3R	21609019	intron	InR -	chr3R	21610357	intron	InR -	chr3R	21611695	intron	InR -	chr3R_15_21610001	chr3R_21610001	RAL-340_100b
3209	chr3R	21761100	21761153	chr3R	21768512	21768570	mdg1	16	7413	11.0	6.0	8.5	1.7	7470	chr3R	21761100	exon	CG42335 +	chr3R	21764835	intron	CG42335 +	chr3R	21768570	exon	CG42335 +	chr3R_16_21760001	chr3R_21760001	RAL-340_100b
3336	chr3R	22239481	22239504	chr3R	22248557	22248589	roo	9	9084	11.0	6.0	8.5	0.9	9108	chr3R	22239481	intron	SKIP +	chr3R	22244035	intron	SKIP +	chr3R	22248589	intron	SKIP +	chr3R_9_22240001	chr3R_22240001	RAL-340_100b
3337	chr3R	22239510	22239523	chr3R	22248554	22248561	roo	8	9064	5.5	6.0	5.8	1.2	9051	chr3R	22239510	intron	SKIP +	chr3R	22244036	intron	SKIP +	chr3R	22248561	intron	SKIP +	chr3R_8_22240001	chr3R_22240001	RAL-340_100b
3345	chr3R	22450521	22450578	chr3R	22453186	22453234	NOF	23	2658	7.0	5.5	6.2	3.2	2713	chr3R	22450521	intron	CG34376 +	chr3R	22451878	intron	CG34376 +	chr3R	22453234	intron	CG34376 +	chr3R_23_22450001	chr3R_22450001	RAL-340_100b
3371	chr3R	22881188	22881227	chr3R	22884918	22884957	Doc	11	3729	2.0	5.5	3.8	2.3	3769	chr3R	22881188	intergenic	not near genes	chr3R	22883072	intergenic	not near genes	chr3R	22884957	intergenic	not near genes	chr3R_11_22880001	chr3R_22880001	RAL-340_100b
3396	chr3R	23558381	23558400	chr3R	23560185	23560206	Bari1	4	1806	13.5	4.5	9.0	0.4	1825	chr3R	23558381	intron	beat-IV +	chr3R	23559294	intron	beat-IV +	chr3R	23560206	intron	beat-IV +	chr3R_4_23555001	chr3R_23555001	RAL-340_100b
3397	chr3R	23558408	23558427	chr3R	23560179	23560233	Bari1	4	1796	7.5	4.5	6.0	0.6	1825	chr3R	23558408	intron	beat-IV +	chr3R	23559320	intron	beat-IV +	chr3R	23560233	intron	beat-IV +	chr3R_4_23555001	chr3R_23555001	RAL-340_100b
3400	chr3R	23684687	23684727	chr3R	23685181	23685207	roo	13	500	4.0	11.0	7.5	1.5	520	chr3R	23684687	exon	CG18754 +	chr3R	23684947	intron	CG18754 +	chr3R	23685207	exon	CG18754 +	chr3R_13_23680001	chr3R_23680001	RAL-340_100b
3406	chr3R	23835385	23835387	chr3R	23844560	23844562	roo	4	9175	26.5	21.0	23.8	0.2	9177	chr3R	23835385	intron	CG34355 +	chr3R	23839974	intron	CG34355 +	chr3R	23844562	intron	CG34355 +	chr3R_4_23835001	chr3R_23835001	RAL-340_100b
3407	chr3R	23835388	23835433	chr3R	23844563	23844608	roo	13	9175	10.5	21.5	16.0	0.8	9220	chr3R	23835388	intron	CG34355 +	chr3R	23839998	intron	CG34355 +	chr3R	23844608	intron	CG34355 +	chr3R_13_23835001	chr3R_23835001	RAL-340_100b
3408	chr3R	23851063	23851088	chr3R	23858755	23858780	opus	10	7691	7.0	23.5	15.2	0.6	7717	chr3R	23851063	3` UTR	CG34355 +	chr3R	23854922	intergenic	not near genes	chr3R	23858780	intergenic	not near genes	chr3R_10_23850001	chr3R_23850001	RAL-340_100b
3416	chr3R	24072063	24072121	chr3R	24072526	24072582	jockey	10	453	5.5	0.0	2.8	2.6	519	chr3R	24072063	intron	4EHP -	chr3R	24072322	intron	4EHP -	chr3R	24072582	intron	4EHP -	chr3R_10_24070001	chr3R_24070001	RAL-340_100b
3418	chr3R	24076908	24076943	chr3R	24078383	24078399	hobo	8	1480	13.0	6.0	9.5	0.8	1491	chr3R	24076908	intron	4EHP -	chr3R	24077654	intron	4EHP -	chr3R	24078399	intron	4EHP -	chr3R_8_24075001	chr3R_24075001	RAL-340_100b
3425	chr3R	24207199	24207219	chr3R	24212295	24212314	flea	6	5098	17.5	16.0	16.8	0.3	5115	chr3R	24207199	intron	twin -	chr3R	24209756	intron	twin -	chr3R	24212314	intron	twin -	chr3R_6_24205001	chr3R_24205001	RAL-340_100b
3426	chr3R	24207220	24207242	chr3R	24212294	24212327	flea	10	5091	13.0	16.0	14.5	0.6	5107	chr3R	24207220	intron	twin -	chr3R	24209774	intron	twin -	chr3R	24212327	intron	twin -	chr3R_10_24205001	chr3R_24205001	RAL-340_100b
3444	chr3R	24594653	24594665	chr3R	24594918	24594930	pogo	7	264	9.5	15.5	12.5	0.5	277	chr3R	24594653	intron	mld +	chr3R	24594792	intron	mld +	chr3R	24594930	intron	mld +	chr3R_7_24590001	chr3R_24590001	RAL-340_100b
3452	chr3R	24730070	24730086	chr3R	24732471	24732489	Doc	11	2401	17.0	2.0	9.5	1.0	2419	chr3R	24730070	intron	tok +	chr3R	24731280	intron	tok +	chr3R	24732489	intron	tok +	chr3R_11_24730001	chr3R_24730001	RAL-340_100b
3453	chr3R	24730087	24730115	chr3R	24732469	24732501	Doc	12	2397	9.0	2.0	5.5	1.8	2414	chr3R	24730087	intron	tok +	chr3R	24731294	intron	tok +	chr3R	24732501	intron	tok +	chr3R_12_24730001	chr3R_24730001	RAL-340_100b
3458	chr3R	24927102	24927149	chr3R	24931918	24931958	Doc	10	4810	3.5	9.5	6.5	1.3	4856	chr3R	24927102	intergenic	Trf4-2 +	chr3R	24929530	intergenic	not near genes	chr3R	24931958	intergenic	CG11771 +	chr3R_10_24925001	chr3R_24925001	RAL-340_100b
3478	chr3R	25725814	25725855	chr3R	25734999	25735040	roo	9	9185	3.5	9.5	6.5	1.2	9226	chr3R	25725814	intron	LpR2 -	chr3R	25730427	intron	LpR2 -	chr3R	25735040	intron	LpR2 -	chr3R_9_25730001	chr3R_25730001	RAL-340_100b
3483	chr3R	25832674	25832719	chr3R	25841881	25841926	roo	24	9203	10.0	13.5	11.8	1.9	9252	chr3R	25832674	exon	alpha4GT2 +	chr3R	25837300	intron	alpha4GT2 +	chr3R	25841926	exon	alpha4GT2 +	chr3R_24_25835001	chr3R_25835001	RAL-340_100b
3494	chr3R	26108805	26108816	chr3R	26117413	26117424	Tirant	6	8607	41.0	0.0	20.5	0.3	8619	chr3R	26108805	5` UTR	CG31324 +	chr3R	26113114	intron	CG31324 +	chr3R	26117424	intron	CG31324 +	chr3R_6_26110001	chr3R_26110001	RAL-340_100b
3495	chr3R	26108817	26108834	chr3R	26117410	26117426	Tirant	5	8597	33.0	0.0	16.5	0.3	8609	chr3R	26108817	5` UTR	CG31324 +	chr3R	26113122	intron	CG31324 +	chr3R	26117426	intron	CG31324 +	chr3R_5_26110001	chr3R_26110001	RAL-340_100b
3496	chr3R	26108839	26108853	chr3R	26117407	26117416	Tirant	4	8568	16.5	0.0	8.2	0.4	8577	chr3R	26108839	5` UTR	CG31324 +	chr3R	26113128	intron	CG31324 +	chr3R	26117416	intron	CG31324 +	chr3R_4_26110001	chr3R_26110001	RAL-340_100b
3511	chr3R	26376301	26376309	chr3R	26385486	26385493	roo	6	9185	22.5	1.5	12.0	0.5	9192	chr3R	26376301	intergenic	not near genes	chr3R	26380897	intergenic	not near genes	chr3R	26385493	intergenic	not near genes	chr3R_6_26380001	chr3R_26380001	RAL-340_100b
3512	chr3R	26376311	26376354	chr3R	26385485	26385526	roo	15	9175	10.0	1.5	5.8	2.2	9215	chr3R	26376311	intergenic	not near genes	chr3R	26380918	intergenic	not near genes	chr3R	26385526	intergenic	not near genes	chr3R_15_26380001	chr3R_26380001	RAL-340_100b
3516	chr3R	26510481	26510529	chr3R	26519566	26519615	roo	13	9086	12.0	7.5	9.8	1.2	9134	chr3R	26510481	intron	plum -	chr3R	26515048	intron	plum -	chr3R	26519615	intron,5` UTR	plum -,CR45226 +	chr3R_13_26515001	chr3R_26515001	RAL-340_100b
3520	chr3R	26558300	26558352	chr3R	26565638	26565679	Stalker4	9	7333	7.0	5.0	6.0	1.3	7379	chr3R	26558300	intron	scrib +	chr3R	26561990	intron	scrib +	chr3R	26565679	intron	scrib +	chr3R_9_26560001	chr3R_26560001	RAL-340_100b
3524	chr3R	26642706	26642741	chr3R	26643124	26643160	jockey	7	418	9.5	8.5	9.0	0.7	454	chr3R	26642706	intergenic	not near genes	chr3R	26642933	intergenic	not near genes	chr3R	26643160	intergenic	not near genes	chr3R_7_26640001	chr3R_26640001	RAL-340_100b
3535	chr3R	26810527	26810579	chr3R	26811037	26811089	roo	25	509	11.5	9.0	10.2	2.2	562	chr3R	26810527	intron	Tl +	chr3R	26810808	intron	Tl +	chr3R	26811089	intron	Tl +	chr3R_25_26810001	chr3R_26810001	RAL-340_100b
3546	chr3R	27007390	27007416	chr3R	27016550	27016576	roo	5	9157	7.5	6.5	7.0	0.6	9186	chr3R	27007390	intron	RYa-R +	chr3R	27011983	intron	RYa-R +	chr3R	27016576	intron	RYa-R +	chr3R_5_27010001	chr3R_27010001	RAL-340_100b
3547	chr3R	27007417	27007426	chr3R	27016542	27016574	roo	5	9147	7.0	6.0	6.5	0.7	9157	chr3R	27007417	intron	RYa-R +	chr3R	27011996	intron	RYa-R +	chr3R	27016574	intron	RYa-R +	chr3R_5_27010001	chr3R_27010001	RAL-340_100b
3552	chr3R	27140492	27140495	chr3R	27148127	27148130	412	4	7634	49.0	18.5	33.8	0.1	7638	chr3R	27140492	intron	CG6051 -	chr3R	27144311	intron	CG6051 -	chr3R	27148130	intron	CG6051 -	chr3R_4_27140001	chr3R_27140001	RAL-340_100b
3553	chr3R	27140496	27140539	chr3R	27148125	27148167	412	39	7632	24.0	18.5	21.2	1.8	7671	chr3R	27140496	intron	CG6051 -	chr3R	27144332	intron	CG6051 -	chr3R	27148167	intron	CG6051 -	chr3R_39_27140001	chr3R_27140001	RAL-340_100b
3559	chr3R	27342772	27342822	chr3R	27351378	27351428	Tirant	19	8602	10.5	10.0	10.2	1.7	8656	chr3R	27342772	intron	CG42534 +	chr3R	27347100	intron	CG42534 +	chr3R	27351428	intron	CG42534 +	chr3R_19_27345001	chr3R_27345001	RAL-340_100b
3573	chr3R	27521143	27521183	chr3R	27530377	27530417	roo	7	9230	10.5	6.5	8.5	0.7	9274	chr3R	27521143	intron	CG12885 +	chr3R	27525780	intron	CG12885 +	chr3R	27530417	intron	CG12885 +	chr3R_7_27525001	chr3R_27525001	RAL-340_100b
3584	chr3R	27725544	27725597	chr3R	27731011	27731051	I-element	7	5464	5.0	0.0	2.5	2.0	5507	chr3R	27725544	intergenic	not near genes	chr3R	27728298	intergenic	not near genes	chr3R	27731051	intergenic	not near genes	chr3R_7_27725001	chr3R_27725001	RAL-340_100b
3586	chr3R	27791627	27791647	chr3R	27794792	27794792	Rt1c	5	3157	49.5	60.5	55.0	0.1	3165	chr3R	27791627	intron	CG34353 -	chr3R	27793210	intron	CG34353 -	chr3R	27794792	intron	CG34353 -	chr3R_5_27790001	chr3R_27790001	RAL-340_100b
3587	chr3R	27856746	27856786	chr3R	27858243	27858293	hopper2	13	1504	22.5	8.0	15.2	0.8	1547	chr3R	27856746	intron	CG34353 -	chr3R	27857520	intron	CG34353 -	chr3R	27858293	intron	CG34353 -	chr3R_13_27855001	chr3R_27855001	RAL-340_100b
3588	chr3R	27862937	27862983	chr3R	27868262	27868271	Transpac	19	5322	10.5	12.0	11.2	1.6	5334	chr3R	27862937	intron	CG34353 -	chr3R	27865604	intron	CG34353 -	chr3R	27868271	intron	CG34353 -	chr3R_19_27865001	chr3R_27865001	RAL-340_100b
3590	chr3R	27875693	27875729	chr3R	27882756	27882809	297	12	7079	10.0	10.5	10.2	1.1	7116	chr3R	27875693	intron	CG34353 -	chr3R	27879251	intron	CG34353 -	chr3R	27882809	intron	CG34353 -	chr3R_12_27875001	chr3R_27875001	RAL-340_100b
3595	chr3R	28068480	28068526	chr3R	28073943	28073975	I-element	13	5462	1.0	13.0	7.0	1.6	5495	chr3R	28068480	intron	CG34362 +	chr3R	28071228	intron	CG34362 +	chr3R	28073975	intron	CG34362 +	chr3R_13_28070001	chr3R_28070001	RAL-340_100b
3598	chr3R	28173651	28173697	chr3R	28181106	28181136	mdg1	41	7452	9.0	7.5	8.2	4.5	7485	chr3R	28173651	intron	CG34354 +	chr3R	28177394	intron	CG34354 +	chr3R	28181136	intron	CG34354 +	chr3R_41_28175001	chr3R_28175001	RAL-340_100b
3599	chr3R	28253346	28253357	chr3R	28255848	28255889	jockey	10	2518	10.0	8.5	9.2	1.0	2543	chr3R	28253346	intergenic	not near genes	chr3R	28254618	intergenic	not near genes	chr3R	28255889	intergenic	not near genes	chr3R_10_28250001	chr3R_28250001	RAL-340_100b
3600	chr3R	28253364	28253369	chr3R	28255884	28255904	jockey	4	2531	8.0	14.5	11.2	0.3	2540	chr3R	28253364	intergenic	not near genes	chr3R	28254634	intergenic	not near genes	chr3R	28255904	intergenic	not near genes	chr3R_4_28250001	chr3R_28250001	RAL-340_100b
3602	chr3R	28302084	28302130	chr3R	28302548	28302594	jockey	15	459	6.5	12.0	9.2	1.5	510	chr3R	28302084	intergenic	not near genes	chr3R	28302339	intergenic	not near genes	chr3R	28302594	intergenic	not near genes	chr3R_15_28300001	chr3R_28300001	RAL-340_100b
3617	chr3R	28758262	28758298	chr3R	28763904	28763905	roo	7	5635	11.0	0.0	5.5	1.1	5643	chr3R	28758262	intergenic	aqrs -	chr3R	28761084	intergenic	not near genes	chr3R	28763905	intergenic	not near genes	chr3R_7_28760001	chr3R_28760001	RAL-340_100b
3618	chr3R	28758309	28758315	chr3R	28771333	28771347	Stalker4	5	13030	8.0	7.0	7.5	0.6	13038	chr3R	28758309	intergenic	aqrs -	chr3R	28764828	intergenic	not near genes	chr3R	28771347	intergenic	not near genes	chr3R_5_28760001	chr3R_28760001	RAL-340_100b
3619	chr3R	28763900	28763914	chr3R	28771353	28771377	Stalker4	5	7462	0.0	7.0	3.5	1.1	7477	chr3R	28763900	intergenic	not near genes	chr3R	28767638	intergenic	not near genes	chr3R	28771377	intergenic	not near genes	chr3R_5_28765001	chr3R_28765001	RAL-340_100b
3620	chr3R	28792862	28792903	chr3R	28797967	28797995	jockey	31	5103	9.5	9.5	9.5	3.0	5133	chr3R	28792862	intergenic	not near genes	chr3R	28795428	intergenic	not near genes	chr3R	28797995	intergenic	not near genes	chr3R_31_28795001	chr3R_28795001	RAL-340_100b
3645	chr3R	29319809	29319833	chr3R	29320153	29320176	jockey	12	342	13.5	8.0	10.8	1.0	367	chr3R	29319809	intergenic	Cnx99A -	chr3R	29319992	intergenic	Cnx99A -	chr3R	29320176	intergenic	not near genes	chr3R_12_29315001	chr3R_29315001	RAL-340_100b
3646	chr3R	29319838	29319859	chr3R	29320145	29320177	jockey	9	328	7.5	6.5	7.0	1.1	339	chr3R	29319838	intergenic	Cnx99A -	chr3R	29320008	intergenic	Cnx99A -	chr3R	29320177	intergenic	not near genes	chr3R_9_29320001	chr3R_29320001	RAL-340_100b
3652	chr3R	29406601	29406625	chr3R	29407909	29407931	jockey	14	1306	13.5	10.0	11.8	1.1	1330	chr3R	29406601	intron	Ptp99A +	chr3R	29407266	intron	Ptp99A +	chr3R	29407931	intron	Ptp99A +	chr3R_14_29405001	chr3R_29405001	RAL-340_100b
3653	chr3R	29406627	29406643	chr3R	29407900	29407929	jockey	14	1302	7.5	8.5	8.0	1.6	1302	chr3R	29406627	intron	Ptp99A +	chr3R	29407278	intron	Ptp99A +	chr3R	29407929	intron	Ptp99A +	chr3R_14_29405001	chr3R_29405001	RAL-340_100b
3665	chr3R	29738240	29738256	chr3R	29739732	29739748	hobo	9	1492	14.5	7.5	11.0	0.8	1508	chr3R	29738240	intergenic	CG1969 +,CG7598 +	chr3R	29738994	intron	CG1969 +	chr3R	29739748	5` UTR	CG1969 +	chr3R_9_29735001	chr3R_29735001	RAL-340_100b
3666	chr3R	29738257	29738294	chr3R	29739729	29739786	hobo	33	1485	7.0	7.5	7.2	4.0	1529	chr3R	29738257	intergenic	CG1969 +,CG7598 +	chr3R	29739022	intron	CG1969 +	chr3R	29739786	5` UTR	CG1969 +	chr3R_33_29735001	chr3R_29735001	RAL-340_100b
3667	chr3R	29760346	29760381	chr3R	29761567	29761607	pogo	13	1226	14.5	7.5	11.0	1.1	1261	chr3R	29760346	intergenic	not near genes	chr3R	29760976	intergenic	not near genes	chr3R	29761607	intergenic	not near genes	chr3R_13_29760001	chr3R_29760001	RAL-340_100b
3671	chr3R	29881998	29882028	chr3R	29891180	29891210	roo	8	9182	13.0	7.0	10.0	0.7	9212	chr3R	29881998	intron	CG31038 +	chr3R	29886604	intron	CG31038 +	chr3R	29891210	intron	CG31038 +	chr3R_8_29885001	chr3R_29885001	RAL-340_100b
3672	chr3R	29882031	29882049	chr3R	29891179	29891231	roo	7	9174	8.0	7.0	7.5	0.8	9200	chr3R	29882031	intron	CG31038 +	chr3R	29886631	intron	CG31038 +	chr3R	29891231	intron	CG31038 +	chr3R_7_29885001	chr3R_29885001	RAL-340_100b
3684	chr3R	30084842	30084851	chr3R	30086323	30086343	hobo	5	1488	7.5	23.0	15.2	0.3	1501	chr3R	30084842	intron	sima +	chr3R	30085592	intron	sima +	chr3R	30086343	intron	sima +	chr3R_5_30085001	chr3R_30085001	RAL-340_100b
3685	chr3R	30084854	30084886	chr3R	30086319	30086351	hobo	10	1482	5.0	19.5	12.2	0.8	1497	chr3R	30084854	intron	sima +	chr3R	30085602	intron	sima +	chr3R	30086351	intron	sima +	chr3R_10_30085001	chr3R_30085001	RAL-340_100b
3688	chr3R	30238738	30238795	chr3R	30239936	30239939	1360	6	1185	7.5	0.5	4.0	1.2	1201	chr3R	30238738	intergenic	not near genes	chr3R	30239338	intergenic	not near genes	chr3R	30239939	intergenic	not near genes	chr3R_6_30235001	chr3R_30235001	RAL-340_100b
3692	chr3R	30317330	30317352	chr3R	30324944	30324969	roo	8	7616	2.5	9.5	6.0	1.1	7639	chr3R	30317330	intron	hdc +	chr3R	30321150	intron	hdc +	chr3R	30324969	intron	hdc +	chr3R_8_30320001	chr3R_30320001	RAL-340_100b
3693	chr3R	30375519	30375561	chr3R	30383169	30383211	412	6	7646	6.5	5.5	6.0	0.9	7692	chr3R	30375519	intergenic	not near genes	chr3R	30379365	intergenic	not near genes	chr3R	30383211	intergenic	not near genes	chr3R_6_30375001	chr3R_30375001	RAL-340_100b
3694	chr3R	30396194	30396216	chr3R	30404485	30404507	roo	8	8290	21.5	14.0	17.8	0.4	8313	chr3R	30396194	intergenic	not near genes	chr3R	30400350	intergenic	not near genes	chr3R	30404507	5` UTR	CR45570 +	chr3R_8_30400001	chr3R_30400001	RAL-340_100b
3695	chr3R	30396219	30396243	chr3R	30404484	30404534	roo	15	8287	13.0	12.5	12.8	1.1	8315	chr3R	30396219	intergenic	not near genes	chr3R	30400376	intergenic	not near genes	chr3R	30404534	5` UTR	CR45570 +	chr3R_15_30400001	chr3R_30400001	RAL-340_100b
3699	chr3R	30679493	30679505	chr3R	30686987	30686999	blood	8	7493	29.5	7.0	18.2	0.4	7506	chr3R	30679493	intergenic	not near genes	chr3R	30683246	intergenic	not near genes	chr3R	30686999	intergenic	not near genes	chr3R_8_30680001	chr3R_30680001	RAL-340_100b
3700	chr3R	30679509	30679550	chr3R	30687003	30687044	blood	21	7492	10.0	10.5	10.2	1.9	7535	chr3R	30679509	intergenic	not near genes	chr3R	30683276	intergenic	not near genes	chr3R	30687044	intergenic	not near genes	chr3R_21_30680001	chr3R_30680001	RAL-340_100b
3715	chr3R	31074205	31074261	chr3R	31081828	31081890	springer	12	7625	8.5	0.0	4.2	2.3	7685	chr3R	31074205	intron	Sox100B +	chr3R	31078048	intron	Sox100B +	chr3R	31081890	intron	Sox100B +	chr3R_12_31075001	chr3R_31075001	RAL-340_100b
3717	chr3R	28544207	28544212	chr3R	31227363	31227368	roo	4	2683156	28.0	56.5	42.2	0.1	2683161	chr3R	28544207	exon	CG12413 -	chr3R	29885788	intron	CG31038 +	chr3R	31227368	intron	CG12054 +	chr3R_4_29885001	chr3R_29885001	RAL-340_100b
3719	chr3R	31279349	31279360	chr3R	31285565	31285576	diver	5	6213	21.5	5.0	13.2	0.4	6227	chr3R	31279349	intergenic	not near genes	chr3R	31282462	intergenic	not near genes	chr3R	31285576	intergenic	not near genes	chr3R_5_31280001	chr3R_31280001	RAL-340_100b
3720	chr3R	31279367	31279398	chr3R	31285563	31285614	diver	23	6208	11.0	5.0	8.0	2.6	6247	chr3R	31279367	intergenic	not near genes	chr3R	31282490	intergenic	not near genes	chr3R	31285614	intergenic	not near genes	chr3R_23_31280001	chr3R_31280001	RAL-340_100b
3722	chr3R	31413083	31413118	chr3R	31418293	31418311	copia	11	5212	5.5	5.0	5.2	1.8	5228	chr3R	31413083	intron	Gprk2 +	chr3R	31415697	intron	Gprk2 +	chr3R	31418311	intron	Gprk2 +	chr3R_11_31415001	chr3R_31415001	RAL-340_100b
3734	chr3R	31691510	31691519	chr3R	31696296	31696310	Doc	6	4789	15.0	8.0	11.5	0.5	4800	chr3R	31691510	intergenic	not near genes	chr3R	31693910	intergenic	not near genes	chr3R	31696310	intergenic	not near genes	chr3R_6_31690001	chr3R_31690001	RAL-340_100b
3735	chr3R	31691525	31691541	chr3R	31696305	31696331	Doc	8	4786	12.0	9.5	10.8	0.7	4806	chr3R	31691525	intergenic	not near genes	chr3R	31693928	intergenic	not near genes	chr3R	31696331	intergenic	not near genes	chr3R_8_31690001	chr3R_31690001	RAL-340_100b
3736	chr3R	31691543	31691562	chr3R	31696296	31696353	Doc	16	4781	7.5	8.0	7.8	1.8	4810	chr3R	31691543	intergenic	not near genes	chr3R	31693948	intergenic	not near genes	chr3R	31696353	intergenic	not near genes	chr3R_16_31690001	chr3R_31690001	RAL-340_100b
3752	chr3R	31997967	31998020	chr3R	32005462	32005515	blood	27	7489	10.0	8.0	9.0	2.7	7548	chr3R	31997967	intron	heph -	chr3R	32001741	intron	heph -	chr3R	32005515	intron	heph -	chr3R_27_32000001	chr3R_32000001	RAL-340_100b
3754	chr4	76489	76516	chr4	81956	81984	I-element	4	5466	7.0	7.5	7.2	0.5	5495	chr4	76489	intron	pan +	chr4	79236	intron	pan +	chr4	81984	intron	pan +	chr4_4_75001	chr4_75001	RAL-340_100b
3755	chr4	319978	320013	chr4	328179	328214	Stalker2	7	8199	3.5	6.5	5.0	1.2	8236	chr4	319978	3` UTR	CG32850 +	chr4	324096	intron	CG32850 +	chr4	328214	3` UTR,3` UTR	CG32850 +,PMCA -	chr4_7_320001	chr4_320001	RAL-340_100b
3758	chr4	671582	671621	chr4	680190	680229	Tirant	13	8606	10.0	5.0	7.5	1.5	8647	chr4	671582	intron	CG11360 +	chr4	675906	intron	CG11360 +	chr4	680229	intron	CG11360 +	chr4_13_675001	chr4_675001	RAL-340_100b
3764	chrX	295834	295879	chrX	303479	303524	412	10	7644	5.0	8.5	6.8	1.3	7690	chrX	295834	intron	CG3777 +	chrX	299679	intron	CG3777 +	chrX	303524	intron	CG3777 +	chrX_10_295001	chrX_295001	RAL-340_100b
3765	chrX	318461	318497	chrX	323564	323608	flea	8	5106	7.5	8.0	7.8	0.9	5147	chrX	318461	intron,intron	CG3777 +,CG32816 -	chrX	321034	intron,intron	CG3777 +,CG32816 -	chrX	323608	intron,intron	CG3777 +,CG32816 -	chrX_8_320001	chrX_320001	RAL-340_100b
3766	chrX	428399	428443	chrX	434609	434646	3S18	13	6207	6.0	7.5	6.8	1.7	6247	chrX	428399	intron	CG32816 -	chrX	431522	intron	CG32816 -	chrX	434646	intron	CG32816 -	chrX_13_430001	chrX_430001	RAL-340_100b
3769	chrX	551433	551453	chrX	558995	559040	412	4	7570	3.5	6.0	4.8	0.7	7607	chrX	551433	intron	Appl +	chrX	555236	intron	Appl +	chrX	559040	intron	Appl +	chrX_4_555001	chrX_555001	RAL-340_100b
3779	chrX	812264	812299	chrX	817898	817953	297	11	5641	10.5	7.0	8.8	1.1	5689	chrX	812264	intron	CG43867 -	chrX	815108	intron	CG43867 -	chrX	817953	intron	CG43867 -	chrX_11_815001	chrX_815001	RAL-340_100b
3780	chrX	827585	827607	chrX	835402	835414	roo	6	7815	18.0	2.0	10.0	0.5	7829	chrX	827585	intron	CG43867 -	chrX	831500	intron	CG43867 -	chrX	835414	intron	CG43867 -	chrX_6_830001	chrX_830001	RAL-340_100b
3781	chrX	827611	827632	chrX	835397	835469	roo	6	7828	12.0	2.0	7.0	0.8	7858	chrX	827611	intron	CG43867 -	chrX	831540	intron	CG43867 -	chrX	835469	intron	CG43867 -	chrX_6_830001	chrX_830001	RAL-340_100b
3783	chrX	906682	906728	chrX	908496	908542	S-element	31	1810	14.5	14.0	14.2	2.0	1860	chrX	906682	intron	CG43867 -	chrX	907612	intron	CG43867 -	chrX	908542	intron	CG43867 -	chrX_31_905001	chrX_905001	RAL-340_100b
3786	chrX	1518032	1518072	chrX	1523444	1523468	jockey	20	5420	5.5	6.5	6.0	2.9	5436	chrX	1518032	intergenic	inc +	chrX	1520750	intergenic	not near genes	chrX	1523468	intergenic	not near genes	chrX_20_1520001	chrX_1520001	RAL-340_100b
3787	chrX	1627964	1627974	chrX	1635454	1635467	gtwin	18	7492	33.5	25.5	29.5	0.6	7503	chrX	1627964	intron,intron	Mur2B -,br +	chrX	1631716	intron,intron	Mur2B -,br +	chrX	1635467	intron,intron	Mur2B -,br +	chrX_18_1630001	chrX_1630001	RAL-340_100b
3788	chrX	1627975	1627981	chrX	1635446	1635463	gtwin	5	7485	28.0	21.5	24.8	0.2	7488	chrX	1627975	intron,intron	Mur2B -,br +	chrX	1631719	intron,intron	Mur2B -,br +	chrX	1635463	intron,intron	Mur2B -,br +	chrX_5_1630001	chrX_1630001	RAL-340_100b
3789	chrX	1627989	1628003	chrX	1635443	1635469	gtwin	4	7469	16.5	21.5	19.0	0.2	7480	chrX	1627989	intron,intron	Mur2B -,br +	chrX	1631729	intron,intron	Mur2B -,br +	chrX	1635469	intron,intron	Mur2B -,br +	chrX_4_1630001	chrX_1630001	RAL-340_100b
3793	chrX	1930517	1930569	chrX	1938113	1938130	opus	25	7590	1.0	7.0	4.0	5.0	7613	chrX	1930517	3` UTR	CG11596 +	chrX	1934324	intergenic	not near genes	chrX	1938130	3` UTR	CG3857 -	chrX_25_1930001	chrX_1930001	RAL-340_100b
3794	chrX	1954862	1954919	chrX	1962827	1962862	Stalker2	14	7954	5.0	7.0	6.0	2.0	8000	chrX	1954862	intron	Hr4 +	chrX	1958862	intron	Hr4 +	chrX	1962862	intron	Hr4 +	chrX_14_1955001	chrX_1955001	RAL-340_100b
3801	chrX	2399818	2399855	chrX	2408195	2408228	roo	12	8373	8.5	6.0	7.2	1.5	8410	chrX	2399818	intergenic	not near genes	chrX	2404023	intergenic	not near genes	chrX	2408228	intergenic	not near genes	chrX_12_2400001	chrX_2400001	RAL-340_100b
3802	chrX	2399856	2399864	chrX	2408194	2408236	roo	6	8364	7.5	6.0	6.8	0.8	8380	chrX	2399856	intergenic	not near genes	chrX	2404046	intergenic	not near genes	chrX	2408236	intergenic	not near genes	chrX_6_2400001	chrX_2400001	RAL-340_100b
3808	chrX	2610365	2610415	chrX	2617507	2617557	HMS-Beagle	8	7142	11.0	5.0	8.0	0.9	7192	chrX	2610365	intergenic	CG8636 -	chrX	2613961	intergenic	not near genes	chrX	2617557	intergenic	Tsp3A -	chrX_8_2610001	chrX_2610001	RAL-340_100b
3809	chrX	2664356	2664402	chrX	2665537	2665573	1360	7	1168	1.5	0.5	1.0	3.5	1217	chrX	2664356	intron	sgg +	chrX	2664964	intron	sgg +	chrX	2665573	intron	sgg +	chrX_7_2660001	chrX_2660001	RAL-340_100b
3813	chrX	2823775	2823778	chrX	2832343	2832346	roo	4	8568	27.0	19.5	23.2	0.2	8571	chrX	2823775	intron	kirre +	chrX	2828060	intron	kirre +	chrX	2832346	intron	kirre +	chrX_4_2825001	chrX_2825001	RAL-340_100b
3814	chrX	2844876	2844930	chrX	2852311	2852365	mdg1	20	7432	10.5	5.5	8.0	2.2	7489	chrX	2844876	intron	kirre +	chrX	2848620	intron	kirre +	chrX	2852365	intron	kirre +	chrX_20_2845001	chrX_2845001	RAL-340_100b
3817	chrX	3058002	3058026	chrX	3058268	3058292	pogo	10	266	14.0	7.5	10.8	0.8	290	chrX	3058002	intron	kirre +	chrX	3058147	intron	kirre +	chrX	3058292	intron	kirre +	chrX_10_3055001	chrX_3055001	RAL-340_100b
3818	chrX	3058030	3058037	chrX	3058266	3058303	pogo	5	259	11.5	6.5	9.0	0.5	273	chrX	3058030	intron	kirre +	chrX	3058166	intron	kirre +	chrX	3058303	intron	kirre +	chrX_5_3055001	chrX_3055001	RAL-340_100b
3819	chrX	3075633	3075658	chrX	3080944	3080944	Transpac	15	5323	9.5	6.0	7.8	1.7	5311	chrX	3075633	intron	kirre +	chrX	3078288	intron	kirre +	chrX	3080944	intron	kirre +	chrX_15_3075001	chrX_3075001	RAL-340_100b
3827	chrX	3415013	3415049	chrX	3421203	3421259	3S18	18	6207	1.0	10.0	5.5	2.8	6246	chrX	3415013	intron,intron	CR44999 +,CG12535 -	chrX	3418136	intron,intron	CR44999 +,CG12535 -	chrX	3421259	intron,intron	CR44999 +,CG12535 -	chrX_18_3415001	chrX_3415001	RAL-340_100b
3828	chrX	3493064	3493121	chrX	3502248	3502288	roo	15	9182	5.0	2.0	3.5	3.3	9224	chrX	3493064	intron,intron	CR44999 +,Gas8 -	chrX	3497676	intron,intron	CR44999 +,Gas8 -	chrX	3502288	intron,intron	CR44999 +,Gas8 -	chrX_15_3495001	chrX_3495001	RAL-340_100b
3832	chrX	3597533	3597561	chrX	3619726	3619754	roo	11	22192	15.0	5.5	10.2	1.0	22221	chrX	3597533	intron	AstA-R1 +	chrX	3608644	intron	AstA-R1 +	chrX	3619754	intron	AstA-R1 +	chrX_11_3605001	chrX_3605001	RAL-340_100b
3833	chrX	3597568	3597581	chrX	3619718	3619739	roo	9	22184	9.5	3.0	6.2	1.2	22171	chrX	3597568	intron	AstA-R1 +	chrX	3608654	intron	AstA-R1 +	chrX	3619739	intron	AstA-R1 +	chrX_9_3605001	chrX_3605001	RAL-340_100b
3836	chrX	3726742	3726758	chrX	3730164	3730175	NOF	11	3419	25.5	1.0	13.2	0.8	3433	chrX	3726742	intron	tlk +	chrX	3728458	intron	tlk +	chrX	3730175	intron	tlk +	chrX_11_3725001	chrX_3725001	RAL-340_100b
3837	chrX	3726759	3726795	chrX	3730160	3730177	NOF	20	3412	19.5	1.0	10.2	1.8	3418	chrX	3726759	intron	tlk +	chrX	3728468	intron	tlk +	chrX	3730177	intron	tlk +	chrX_20_3725001	chrX_3725001	RAL-340_100b
3845	chrX	3986836	3986894	chrX	3994494	3994522	412	44	7651	15.0	6.5	10.8	3.7	7686	chrX	3986836	intergenic	not near genes	chrX	3990679	intergenic	not near genes	chrX	3994522	intergenic	not near genes	chrX_44_3990001	chrX_3990001	RAL-340_100b
3851	chrX	4157871	4157909	chrX	4164949	4164987	297	16	7076	7.5	6.0	6.8	2.1	7116	chrX	4157871	intron	Fas2 -	chrX	4161429	intron	Fas2 -	chrX	4164987	intron	Fas2 -	chrX_16_4160001	chrX_4160001	RAL-340_100b
3875	chrX	4700368	4700422	chrX	4700736	4700790	jockey	23	366	10.5	10.0	10.2	2.1	422	chrX	4700368	3` UTR	ctp +	chrX	4700579	3` UTR	ctp +	chrX	4700790	3` UTR	ctp +	chrX_23_4700001	chrX_4700001	RAL-340_100b
3877	chrX	4731792	4731805	chrX	4736910	4736921	jockey	18	5117	37.0	21.0	29.0	0.6	5129	chrX	4731792	intergenic	not near genes	chrX	4734356	intergenic	not near genes	chrX	4736921	intergenic	not near genes	chrX_18_4730001	chrX_4730001	RAL-340_100b
3878	chrX	4731806	4731813	chrX	4736918	4736921	jockey	5	5115	34.5	27.0	30.8	0.2	5115	chrX	4731806	intergenic	not near genes	chrX	4734364	intergenic	not near genes	chrX	4736921	intergenic	not near genes	chrX_5_4730001	chrX_4730001	RAL-340_100b
3881	chrX	4763226	4763279	chrX	4763739	4763792	Stalker4	24	512	7.0	11.0	9.0	2.4	566	chrX	4763226	intergenic	not near genes	chrX	4763509	intergenic	not near genes	chrX	4763792	intergenic	not near genes	chrX_24_4760001	chrX_4760001	RAL-340_100b
3883	chrX	4792361	4792407	chrX	4792818	4792818	jockey	16	453	3.0	5.5	4.2	3.1	457	chrX	4792361	intergenic	not near genes	chrX	4792590	intergenic	not near genes	chrX	4792818	intergenic	not near genes	chrX_16_4790001	chrX_4790001	RAL-340_100b
3885	chrX	4827963	4827983	chrX	4835359	4835379	Stalker4	4	7396	5.5	9.5	7.5	0.5	7416	chrX	4827963	intergenic	not near genes	chrX	4831671	intergenic	not near genes	chrX	4835379	intergenic	not near genes	chrX_4_4830001	chrX_4830001	RAL-340_100b
3886	chrX	4827988	4827994	chrX	4835338	4835338	Stalker4	6	7362	4.0	7.0	5.5	0.9	7350	chrX	4827988	intergenic	not near genes	chrX	4831663	intergenic	not near genes	chrX	4835338	intergenic	not near genes	chrX_6_4830001	chrX_4830001	RAL-340_100b
3893	chrX	4990022	4990069	chrX	4997261	4997301	roo	24	7238	3.5	7.0	5.2	3.9	7279	chrX	4990022	intron	CR44833 -	chrX	4993662	intron	CR44833 -	chrX	4997301	intron	CR44833 -	chrX_24_4990001	chrX_4990001	RAL-340_100b
3895	chrX	5096260	5096300	chrX	5103845	5103887	springer	10	7577	9.5	11.5	10.5	0.9	7627	chrX	5096260	intron,intron	CG15465 +,rg +	chrX	5100074	intron,intron	CG15465 +,rg +	chrX	5103887	intron,intron	CG15465 +,rg +	chrX_10_5100001	chrX_5100001	RAL-340_100b
3899	chrX	5338682	5338717	chrX	5339960	5339995	jockey	15	1275	16.5	12.0	14.2	1.0	1313	chrX	5338682	intergenic	not near genes	chrX	5339338	intergenic	not near genes	chrX	5339995	intergenic	SK +	chrX_15_5335001	chrX_5335001	RAL-340_100b
3907	chrX	5524815	5524873	chrX	5528703	5528709	412	12	3882	6.0	2.5	4.2	2.3	3894	chrX	5524815	intergenic	snoRNA:Psi28S-3342 -	chrX	5526762	intergenic	not near genes	chrX	5528709	intergenic	Vsx2 -	chrX_12_5525001	chrX_5525001	RAL-340_100b
3910	chrX	5727401	5727416	chrX	5732165	5732180	Doc	4	4764	4.0	5.5	4.8	0.7	4779	chrX	5727401	intron	CG32758 -	chrX	5729790	intron	CG32758 -	chrX	5732180	intron	CG32758 -	chrX_4_5725001	chrX_5725001	RAL-340_100b
3914	chrX	5883793	5883838	chrX	5884054	5884104	pogo	15	266	7.5	9.5	8.5	1.6	311	chrX	5883793	intron	CR45668 -	chrX	5883948	intron	CR45668 -	chrX	5884104	intron	CR45668 -	chrX_15_5880001	chrX_5880001	RAL-340_100b
3915	chrX	5884146	5884154	chrX	5884412	5884420	pogo	4	266	15.5	6.5	11.0	0.3	274	chrX	5884146	intron	CR45668 -	chrX	5884283	intron	CR45668 -	chrX	5884420	intron	CR45668 -	chrX_4_5880001	chrX_5880001	RAL-340_100b
3916	chrX	5884156	5884187	chrX	5884411	5884453	pogo	7	257	9.5	6.5	8.0	0.8	297	chrX	5884156	intron	CR45668 -	chrX	5884304	intron	CR45668 -	chrX	5884453	intron	CR45668 -	chrX_7_5880001	chrX_5880001	RAL-340_100b
3919	chrX	6171564	6171592	chrX	6179021	6179050	Quasimodo	10	7452	8.5	8.5	8.5	1.1	7486	chrX	6171564	intron	Ca-alpha1T -	chrX	6175307	intron	Ca-alpha1T -	chrX	6179050	intron	Ca-alpha1T -	chrX_10_6175001	chrX_6175001	RAL-340_100b
3920	chrX	6171594	6171610	chrX	6179020	6179066	Quasimodo	10	7447	5.5	8.5	7.0	1.2	7472	chrX	6171594	intron	Ca-alpha1T -	chrX	6175330	intron	Ca-alpha1T -	chrX	6179066	intron	Ca-alpha1T -	chrX_10_6175001	chrX_6175001	RAL-340_100b
3924	chrX	6335216	6335220	chrX	6337727	6337755	Tirant	8	2524	2.5	8.0	5.2	1.3	2539	chrX	6335216	intergenic	not near genes	chrX	6336486	intergenic	not near genes	chrX	6337755	intergenic	CG3842 +	chrX_8_6335001	chrX_6335001	RAL-340_100b
3925	chrX	6335222	6335241	chrX	6337721	6337776	Tirant	18	2527	1.0	6.0	3.5	4.0	2554	chrX	6335222	intergenic	not near genes	chrX	6336499	intergenic	not near genes	chrX	6337776	5` UTR	CG3842 +	chrX_18_6335001	chrX_6335001	RAL-340_100b
3928	chrX	6392855	6392898	chrX	6397638	6397688	Doc	15	4780	4.5	6.0	5.2	2.4	4833	chrX	6392855	intergenic	not near genes	chrX	6395272	intergenic	not near genes	chrX	6397688	intergenic	not near genes	chrX_15_6395001	chrX_6395001	RAL-340_100b
3930	chrX	6445321	6445336	chrX	6451104	6451108	297	7	5780	7.5	18.5	13.0	0.5	5787	chrX	6445321	intron	CG42340 -	chrX	6448214	intron	CG42340 -	chrX	6451108	intron	CG42340 -	chrX_7_6445001	chrX_6445001	RAL-340_100b
3933	chrX	6562797	6562808	chrX	6571304	6571315	Tirant	6	8507	14.5	8.5	11.5	0.5	8518	chrX	6562797	intron	CG34417 +	chrX	6567056	intron	CG34417 +	chrX	6571315	intron	CG34417 +	chrX_6_6565001	chrX_6565001	RAL-340_100b
3934	chrX	6562811	6562848	chrX	6571303	6571338	Tirant	16	8501	7.0	7.5	7.2	2.0	8527	chrX	6562811	intron	CG34417 +	chrX	6567074	intron	CG34417 +	chrX	6571338	intron	CG34417 +	chrX_16_6565001	chrX_6565001	RAL-340_100b
3936	chrX	6605464	6605504	chrX	6608505	6608551	Burdock	11	3041	13.0	10.5	11.8	0.9	3087	chrX	6605464	intron	pigs +	chrX	6607008	intron	pigs +	chrX	6608551	intron	pigs +	chrX_11_6605001	chrX_6605001	RAL-340_100b
3948	chrX	7023580	7023586	chrX	7030995	7031001	Tabor	5	7415	15.0	9.0	12.0	0.4	7421	chrX	7023580	intron	CG12541 -	chrX	7027290	intron	CG12541 -	chrX	7031001	intron	CG12541 -	chrX_5_7025001	chrX_7025001	RAL-340_100b
3949	chrX	7023587	7023633	chrX	7030992	7031017	Tabor	37	7409	2.0	9.0	5.5	5.7	7430	chrX	7023587	intron	CG12541 -	chrX	7027302	intron	CG12541 -	chrX	7031017	intron	CG12541 -	chrX_37_7025001	chrX_7025001	RAL-340_100b
3951	chrX	7125223	7125272	chrX	7134407	7134456	roo	23	9183	2.5	6.5	4.5	4.2	9233	chrX	7125223	intergenic	not near genes	chrX	7129840	intergenic	not near genes	chrX	7134456	intergenic	not near genes	chrX_23_7125001	chrX_7125001	RAL-340_100b
3958	chrX	7702891	7702932	chrX	7703350	7703356	jockey	14	461	13.5	8.0	10.8	1.2	465	chrX	7702891	intron	CHES-1-like -	chrX	7703124	intron	CHES-1-like -	chrX	7703356	intron	CHES-1-like -	chrX_14_7700001	chrX_7700001	RAL-340_100b
3961	chrX	7845708	7845756	chrX	7847217	7847272	hopper2	11	1513	6.5	5.5	6.0	1.6	1564	chrX	7845708	intergenic	not near genes	chrX	7846490	intergenic	not near genes	chrX	7847272	intergenic	not near genes	chrX_11_7845001	chrX_7845001	RAL-340_100b
3966	chrX	8031431	8031449	chrX	8035732	8035777	Juan	10	4327	7.5	3.0	5.2	1.6	4346	chrX	8031431	intergenic	not near genes	chrX	8033604	intergenic	not near genes	chrX	8035777	3` UTR	CG2233 -	chrX_10_8030001	chrX_8030001	RAL-340_100b
3973	chrX	8364836	8364842	chrX	8365258	8365262	BS	6	422	6.0	11.0	8.5	0.6	426	chrX	8364836	intron	nAChRalpha3 -	chrX	8365049	intron	nAChRalpha3 -	chrX	8365262	intron	nAChRalpha3 -	chrX_6_8365001	chrX_8365001	RAL-340_100b
3974	chrX	8364859	8364863	chrX	8365243	8365276	BS	4	410	3.5	7.0	5.2	0.6	417	chrX	8364859	intron	nAChRalpha3 -	chrX	8365068	intron	nAChRalpha3 -	chrX	8365276	intron	nAChRalpha3 -	chrX_4_8365001	chrX_8365001	RAL-340_100b
3983	chrX	8922312	8922352	chrX	8922771	8922811	jockey	21	457	9.5	5.5	7.5	2.5	499	chrX	8922312	intron	rdgA +	chrX	8922562	intron	rdgA +	chrX	8922811	intron	rdgA +	chrX_21_8920001	chrX_8920001	RAL-340_100b
3984	chrX	8948743	8948784	chrX	8956278	8956319	roo	16	7531	2.5	7.0	4.8	2.8	7576	chrX	8948743	intron	rdgA +	chrX	8952531	intron	rdgA +	chrX	8956319	intron	rdgA +	chrX_16_8950001	chrX_8950001	RAL-340_100b
3990	chrX	9508123	9508135	chrX	9509666	9509678	jockey	5	1543	26.0	14.5	20.2	0.2	1555	chrX	9508123	intron	CG32700 -	chrX	9508900	intron	CG32700 -	chrX	9509678	intron	CG32700 -	chrX_5_9505001	chrX_9505001	RAL-340_100b
3991	chrX	9508141	9508171	chrX	9509648	9509654	jockey	17	1532	12.0	7.0	9.5	1.6	1513	chrX	9508141	intron	CG32700 -	chrX	9508898	intron	CG32700 -	chrX	9509654	intron	CG32700 -	chrX_17_9505001	chrX_9505001	RAL-340_100b
3993	chrX	9575782	9575818	chrX	9576120	9576167	mdg3	18	342	6.0	6.0	6.0	2.6	385	chrX	9575782	intron,exon	CG32699 -,CG42395 -	chrX	9575974	intron,intron	CG32699 -,CG42395 -	chrX	9576167	intron,5` UTR	CG32699 -,CG42395 -	chrX_18_9575001	chrX_9575001	RAL-340_100b
4001	chrX	3288105	3288108	chrX	9845361	9845361	Tirant	5	6557254	45.5	114.0	79.8	0.1	6557256	chrX	3288105	intron	dnc +	chrX	6566733	intron	CG34417 +	chrX	9845361	intron	CG32698 +	chrX_5_6565001	chrX_6565001	RAL-340_100b
4005	chrX	10138191	10138246	chrX	10145720	10145775	412	14	7527	6.0	12.0	9.0	1.4	7584	chrX	10138191	intron,intron	RhoU +,CR44894 -	chrX	10141983	intron,intron	RhoU +,CR44894 -	chrX	10145775	intron,intron	RhoU +,CR44894 -	chrX_14_10140001	chrX_10140001	RAL-340_100b
4009	chrX	10267297	10267318	chrX	10276461	10276465	roo	4	9162	0.5	3.5	2.0	1.3	9168	chrX	10267297	3` UTR	alpha-Man-I -	chrX	10271881	intron	alpha-Man-I -	chrX	10276465	3` UTR	alpha-Man-I -	chrX_4_10270001	chrX_10270001	RAL-340_100b
4011	chrX	10348779	10348817	chrX	10356369	10356407	springer	8	7587	14.0	12.0	13.0	0.6	7628	chrX	10348779	intergenic	snoRNA:U3:9B +	chrX	10352593	intergenic	not near genes	chrX	10356407	intergenic	l(1)G0289 -	chrX_8_10350001	chrX_10350001	RAL-340_100b
4016	chrX	10550832	10550888	chrX	10552323	10552375	hobo	25	1487	5.0	11.0	8.0	2.8	1543	chrX	10550832	intron	spri -	chrX	10551604	intron	spri -	chrX	10552375	intron	spri -	chrX_25_10550001	chrX_10550001	RAL-340_100b
4019	chrX	10686036	10686078	chrX	10691198	10691240	roo	14	5161	5.0	5.0	5.0	2.3	5204	chrX	10686036	intron	X11Lbeta +	chrX	10688638	intron	X11Lbeta +	chrX	10691240	intron	X11Lbeta +	chrX_14_10685001	chrX_10685001	RAL-340_100b
4020	chrX	10772650	10772697	chrX	10772758	10772794	Tirant	20	101	9.0	5.0	7.0	2.5	144	chrX	10772650	intron	CG15211 +	chrX	10772722	intron	CG15211 +	chrX	10772794	intron	CG15211 +	chrX_20_10770001	chrX_10770001	RAL-340_100b
4024	chrX	11095989	11096028	chrX	11103098	11103155	HMS-Beagle	10	7125	2.0	10.0	6.0	1.4	7166	chrX	11095989	intergenic	not near genes	chrX	11099572	intergenic	not near genes	chrX	11103155	intron	CG42249 +	chrX_10_11095001	chrX_11095001	RAL-340_100b
4027	chrX	11184226	11184273	chrX	11189327	11189374	flea	8	5098	6.0	10.5	8.2	0.9	5148	chrX	11184226	intergenic	not near genes	chrX	11186800	intergenic	not near genes	chrX	11189374	intergenic	not near genes	chrX_8_11185001	chrX_11185001	RAL-340_100b
4030	chrX	11312038	11312065	chrX	11319416	11319436	Stalker2	5	7371	11.0	12.5	11.8	0.4	7398	chrX	11312038	intergenic	not near genes	chrX	11315737	intergenic	not near genes	chrX	11319436	intergenic	not near genes	chrX_5_11315001	chrX_11315001	RAL-340_100b
4031	chrX	11312069	11312087	chrX	11319412	11319465	Stalker2	7	7368	6.5	11.5	9.0	0.7	7396	chrX	11312069	intergenic	not near genes	chrX	11315767	intergenic	not near genes	chrX	11319465	intergenic	not near genes	chrX_7_11315001	chrX_11315001	RAL-340_100b
4033	chrX	11535024	11535037	chrX	11541519	11541532	Burdock	4	6495	18.5	10.5	14.5	0.3	6508	chrX	11535024	intron	Drak +	chrX	11538278	intron	Drak +	chrX	11541532	intron	Drak +	chrX_4_11535001	chrX_11535001	RAL-340_100b
4034	chrX	11571430	11571458	chrX	11571695	11571724	pogo	28	265	20.5	19.5	20.0	1.3	294	chrX	11571430	3` UTR	Kmn1 -	chrX	11571577	3` UTR	Kmn1 -	chrX	11571724	3` UTR	Kmn1 -	chrX_28_11570001	chrX_11570001	RAL-340_100b
4035	chrX	11571459	11571485	chrX	11571693	11571751	pogo	24	263	9.5	18.5	14.0	1.6	292	chrX	11571459	3` UTR	Kmn1 -	chrX	11571605	3` UTR	Kmn1 -	chrX	11571751	3` UTR	Kmn1 -	chrX_24_11570001	chrX_11570001	RAL-340_100b
4038	chrX	11633393	11633448	chrX	11640472	11640517	297	27	7072	4.5	15.0	9.8	2.5	7124	chrX	11633393	intron	Ptp10D +	chrX	11636955	intron	Ptp10D +	chrX	11640517	intron	Ptp10D +	chrX_27_11635001	chrX_11635001	RAL-340_100b
4053	chrX	12168119	12168126	chrX	12173582	12173593	I-element	5	5466	23.0	22.0	22.5	0.2	5474	chrX	12168119	intron	Ten-a +	chrX	12170856	intron	Ten-a +	chrX	12173593	intron	Ten-a +	chrX_5_12170001	chrX_12170001	RAL-340_100b
4054	chrX	12168137	12168145	chrX	12173579	12173612	I-element	11	5458	20.0	20.5	20.2	0.5	5475	chrX	12168137	intron	Ten-a +	chrX	12170874	intron	Ten-a +	chrX	12173612	intron	Ten-a +	chrX_11_12170001	chrX_12170001	RAL-340_100b
4055	chrX	12168150	12168168	chrX	12173587	12173594	I-element	10	5450	13.5	25.0	19.2	0.5	5444	chrX	12168150	intron	Ten-a +	chrX	12170872	intron	Ten-a +	chrX	12173594	intron	Ten-a +	chrX_10_12170001	chrX_12170001	RAL-340_100b
4058	chrX	12301944	12301965	chrX	12303265	12303296	X-element	12	1329	4.5	2.5	3.5	2.7	1352	chrX	12301944	intron	Ten-a +	chrX	12302620	intron	Ten-a +	chrX	12303296	intron	Ten-a +	chrX_12_12300001	chrX_12300001	RAL-340_100b
4060	chrX	12381880	12381903	chrX	12385777	12385790	flea	8	3902	3.5	11.0	7.2	1.0	3910	chrX	12381880	intergenic	not near genes	chrX	12383835	intergenic	not near genes	chrX	12385790	intergenic	not near genes	chrX_8_12380001	chrX_12380001	RAL-340_100b
4065	chrX	9845361	9845361	chrX	12546482	12546495	gypsy5	6	2701131	93.0	45.0	69.0	0.1	2701134	chrX	9845361	intron	CG32698 +	chrX	11195928	intergenic	not near genes	chrX	12546495	intron	CG43921 -	chrX_6_11195001	chrX_11195001	RAL-340_100b
4066	chrX	9845361	9845361	chrX	12546496	12546496	gypsy5	21	2701135	93.0	47.0	70.0	0.3	2701135	chrX	9845361	intron	CG32698 +	chrX	11195928	intergenic	not near genes	chrX	12546496	intron	CG43921 -	chrX_21_11195001	chrX_11195001	RAL-340_100b
4078	chrX	12930592	12930608	chrX	12937713	12937729	HMS-Beagle	5	7129	4.0	19.5	11.8	0.4	7137	chrX	12930592	intron	fne +	chrX	12934160	intron	fne +	chrX	12937729	intron	fne +	chrX_5_12930001	chrX_12930001	RAL-340_100b
4105	chrX	13401458	13401519	chrX	13401835	13401896	jockey	15	366	4.5	4.0	4.2	2.9	438	chrX	13401458	intergenic	CG1673 +,CG12725 -	chrX	13401677	intergenic	CG12725 -,CG1673 +	chrX	13401896	3` UTR	CG12725 -	chrX_15_13400001	chrX_13400001	RAL-340_100b
4107	chrX	13429442	13429484	chrX	13430616	13430658	jockey	13	1172	7.0	5.5	6.2	1.8	1216	chrX	13429442	intergenic	not near genes	chrX	13430050	intergenic	not near genes	chrX	13430658	intergenic	not near genes	chrX_13_13430001	chrX_13430001	RAL-340_100b
4110	chrX	13463627	13463669	chrX	13469229	13469271	mdg3	13	5601	16.5	6.0	11.2	1.1	5644	chrX	13463627	intron	Neto +	chrX	13466449	intron	Neto +	chrX	13469271	intron	Neto +	chrX_13_13465001	chrX_13465001	RAL-340_100b
4111	chrX	13463670	13463678	chrX	13469222	13469224	mdg3	5	5571	8.0	5.0	6.5	0.7	5554	chrX	13463670	intron	Neto +	chrX	13466447	intron	Neto +	chrX	13469224	intron	Neto +	chrX_5_13465001	chrX_13465001	RAL-340_100b
4120	chrX	13937956	13938003	chrX	13941252	13941299	I-element	29	3293	8.0	6.0	7.0	3.6	3343	chrX	13937956	intron	mamo -	chrX	13939628	intron	mamo -	chrX	13941299	intron	mamo -	chrX_29_13935001	chrX_13935001	RAL-340_100b
4123	chrX	14104998	14105053	chrX	14114174	14114194	roo	17	9173	13.5	6.0	9.8	1.6	9196	chrX	14104998	intergenic	not near genes	chrX	14109596	intergenic	not near genes	chrX	14114194	5` UTR	CR44657 +	chrX_17_14105001	chrX_14105001	RAL-340_100b
4125	chrX	14157571	14157621	chrX	14163253	14163268	297	10	5675	1.5	6.0	3.8	2.1	5697	chrX	14157571	intergenic	not near genes	chrX	14160420	intergenic	not near genes	chrX	14163268	intergenic	not near genes	chrX_10_14160001	chrX_14160001	RAL-340_100b
4128	chrX	14416285	14416300	chrX	14421078	14421093	F-element	5	4793	18.5	4.0	11.2	0.4	4808	chrX	14416285	intron	dpr8 +	chrX	14418689	intron	dpr8 +	chrX	14421093	intron	dpr8 +	chrX_5_14415001	chrX_14415001	RAL-340_100b
4129	chrX	14416308	14416342	chrX	14421076	14421088	F-element	11	4779	11.0	4.0	7.5	1.3	4780	chrX	14416308	intron	dpr8 +	chrX	14418698	intron	dpr8 +	chrX	14421088	intron	dpr8 +	chrX_11_14415001	chrX_14415001	RAL-340_100b
4138	chrX	14636451	14636456	chrX	14641917	14641922	I-element	5	5465	23.5	11.5	17.5	0.3	5471	chrX	14636451	intron	NetA -	chrX	14639186	intron	NetA -	chrX	14641922	intron	NetA -	chrX_5_14635001	chrX_14635001	RAL-340_100b
4139	chrX	14636457	14636475	chrX	14641908	14641923	I-element	12	5463	13.0	10.0	11.5	1.0	5466	chrX	14636457	intron	NetA -	chrX	14639190	intron	NetA -	chrX	14641923	intron	NetA -	chrX_12_14635001	chrX_14635001	RAL-340_100b
4140	chrX	14636477	14636487	chrX	14641901	14641953	I-element	5	5456	10.5	8.5	9.5	0.5	5476	chrX	14636477	intron	NetA -	chrX	14639215	intron	NetA -	chrX	14641953	intron	NetA -	chrX_5_14635001	chrX_14635001	RAL-340_100b
4144	chrX	14778012	14778050	chrX	14782834	14782852	Doc	17	4821	8.0	6.0	7.0	2.1	4840	chrX	14778012	intergenic	CG5347 +	chrX	14780432	intergenic	not near genes	chrX	14782852	intergenic	Ag5r2 -	chrX_17_14780001	chrX_14780001	RAL-340_100b
4145	chrX	14818741	14818798	chrX	14823970	14824019	copia	16	5221	4.0	4.0	4.0	3.2	5278	chrX	14818741	intron	rut -	chrX	14821380	intron	rut -	chrX	14824019	intron	rut -	chrX_16_14820001	chrX_14820001	RAL-340_100b
4148	chrX	14936846	14936890	chrX	14946128	14946171	roo	23	9281	4.5	13.0	8.8	2.3	9325	chrX	14936846	intron	pdgy -	chrX	14941508	intron	pdgy -	chrX	14946171	intron	pdgy -	chrX_23_14940001	chrX_14940001	RAL-340_100b
4155	chrX	15273696	15273734	chrX	15274871	15274916	1360	16	1180	7.5	10.5	9.0	1.6	1220	chrX	15273696	intergenic	not near genes	chrX	15274306	intergenic	not near genes	chrX	15274916	intergenic	not near genes	chrX_16_15270001	chrX_15270001	RAL-340_100b
4160	chrX	15413038	15413087	chrX	15417359	15417369	Juan	22	4321	8.0	7.0	7.5	2.6	4331	chrX	15413038	intron	Cngl -	chrX	15415204	intron	Cngl -	chrX	15417369	intron	Cngl -	chrX_22_15415001	chrX_15415001	RAL-340_100b
4169	chrX	16222757	16222791	chrX	16231132	16231166	roo	17	8375	4.0	4.5	4.2	3.3	8409	chrX	16222757	intergenic	not near genes	chrX	16226962	intergenic	not near genes	chrX	16231166	intergenic	not near genes	chrX_17_16225001	chrX_16225001	RAL-340_100b
4170	chrX	16245933	16245956	chrX	16246059	16246088	INE-1	6	131	10.5	0.0	5.2	1.0	155	chrX	16245933	intergenic	not near genes	chrX	16246010	intergenic	not near genes	chrX	16246088	intergenic	not near genes	chrX_6_16245001	chrX_16245001	RAL-340_100b
4172	chrX	16340644	16340697	chrX	16349826	16349879	roo	11	9176	8.0	8.5	8.2	1.2	9235	chrX	16340644	intergenic	Dsp1 +	chrX	16345262	intergenic	not near genes	chrX	16349879	intergenic	sl +	chrX_11_16345001	chrX_16345001	RAL-340_100b
4173	chrX	16492623	16492674	chrX	16498225	16498275	mdg3	13	5599	7.0	8.5	7.8	1.5	5652	chrX	16492623	intron	para -	chrX	16495449	intron	para -	chrX	16498275	exon	para -	chrX_13_16495001	chrX_16495001	RAL-340_100b
4192	chrX	16936001	16936006	chrX	16936444	16936449	jockey	10	443	14.5	26.5	20.5	0.5	448	chrX	16936001	intron	CG4928 +	chrX	16936225	intron	CG4928 +	chrX	16936449	intron	CG4928 +	chrX_10_16935001	chrX_16935001	RAL-340_100b
4193	chrX	16936009	16936014	chrX	16936435	16936457	jockey	9	439	14.0	21.0	17.5	0.5	448	chrX	16936009	intron	CG4928 +	chrX	16936233	intron	CG4928 +	chrX	16936457	intron	CG4928 +	chrX_9_16935001	chrX_16935001	RAL-340_100b
4194	chrX	16936016	16936029	chrX	16936422	16936472	jockey	15	436	11.5	16.5	14.0	1.0	456	chrX	16936016	intron	CG4928 +	chrX	16936244	intron	CG4928 +	chrX	16936472	intron	CG4928 +	chrX_15_16935001	chrX_16935001	RAL-340_100b
4202	chrX	17195193	17195233	chrX	17200302	17200342	flea	14	5106	8.5	20.0	14.2	0.9	5149	chrX	17195193	3` UTR	baz +	chrX	17197768	3` UTR	baz +	chrX	17200342	3` UTR	baz +	chrX_14_17195001	chrX_17195001	RAL-340_100b
4210	chrX	17431329	17431336	chrX	17431695	17431697	jockey	5	365	24.0	7.5	15.8	0.3	368	chrX	17431329	intron	CG12994 -	chrX	17431513	intron	CG12994 -	chrX	17431697	intron	CG12994 -	chrX_5_17430001	chrX_17430001	RAL-340_100b
4212	chrX	17556923	17556965	chrX	17557447	17557448	mdg1	5	512	4.0	7.0	5.5	0.8	525	chrX	17556923	intron	CG43658 -	chrX	17557186	intron	CG43658 -	chrX	17557448	intron	CG43658 -	chrX_5_17555001	chrX_17555001	RAL-340_100b
4222	chrX	17792936	17792945	chrX	17796249	17796266	flea	5	3317	20.0	9.0	14.5	0.3	3330	chrX	17792936	intron	OdsH +	chrX	17794601	intron	OdsH +	chrX	17796266	intron	OdsH +	chrX_5_17790001	chrX_17790001	RAL-340_100b
4223	chrX	17792972	17792983	chrX	17796257	17796304	flea	8	3314	9.5	13.0	11.2	0.7	3332	chrX	17792972	intron	OdsH +	chrX	17794638	intron	OdsH +	chrX	17796304	intron	OdsH +	chrX_8_17790001	chrX_17790001	RAL-340_100b
4227	chrX	18194044	18194096	chrX	18194604	18194645	BS	15	554	8.5	7.5	8.0	1.7	601	chrX	18194044	intron	Frq2 +	chrX	18194344	intron	Frq2 +	chrX	18194645	intron	Frq2 +	chrX_15_18190001	chrX_18190001	RAL-340_100b
4233	chrX	18429481	18429524	chrX	18434817	18434852	Transpac	16	5335	4.5	6.0	5.2	2.6	5371	chrX	18429481	intergenic	not near genes	chrX	18432166	intergenic	not near genes	chrX	18434852	intergenic	not near genes	chrX_16_18430001	chrX_18430001	RAL-340_100b
4249	chrX	18957054	18957092	chrX	18965730	18965768	roo	21	8683	9.5	5.0	7.2	2.6	8714	chrX	18957054	intron	CG43759 +	chrX	18961411	intron	CG43759 +	chrX	18965768	intron	CG43759 +	chrX_21_18960001	chrX_18960001	RAL-340_100b
4251	chrX	19060386	19060418	chrX	19065195	19065215	Doc	22	4808	12.5	11.5	12.0	1.7	4829	chrX	19060386	intron	CG14190 +	chrX	19062800	intron	CG14190 +	chrX	19065215	intron	CG14190 +	chrX_22_19060001	chrX_19060001	RAL-340_100b
4252	chrX	19060420	19060439	chrX	19065194	19065245	Doc	5	4801	8.5	11.5	10.0	0.5	4825	chrX	19060420	intron	CG14190 +	chrX	19062832	intron	CG14190 +	chrX	19065245	intron	CG14190 +	chrX_5_19060001	chrX_19060001	RAL-340_100b
4259	chrX	19136529	19136584	chrX	19143473	19143476	412	16	6937	7.5	5.0	6.2	2.2	6947	chrX	19136529	intergenic	not near genes	chrX	19140002	intergenic	not near genes	chrX	19143476	3` UTR	RhoGAP18B -	chrX_16_19140001	chrX_19140001	RAL-340_100b
4264	chrX	19356971	19357023	chrX	19358431	19358507	NOF	11	1470	8.0	7.0	7.5	1.3	1536	chrX	19356971	intron	kek5 +	chrX	19357739	intron	kek5 +	chrX	19358507	intron	kek5 +	chrX_11_19355001	chrX_19355001	RAL-340_100b
4267	chrX	19380140	19380145	chrX	19380401	19380411	pogo	4	264	22.5	3.0	12.8	0.3	271	chrX	19380140	intron	kek5 +	chrX	19380276	intron	kek5 +	chrX	19380411	intron	kek5 +	chrX_4_19380001	chrX_19380001	RAL-340_100b
4268	chrX	19380148	19380187	chrX	19380397	19380453	pogo	8	257	8.0	3.0	5.5	1.2	305	chrX	19380148	intron	kek5 +	chrX	19380300	intron	kek5 +	chrX	19380453	intron	kek5 +	chrX_8_19380001	chrX_19380001	RAL-340_100b
4272	chrX	19472102	19472123	chrX	19472697	19472718	jockey	6	592	14.5	10.0	12.2	0.5	616	chrX	19472102	intergenic	kek5 +	chrX	19472410	intergenic	kek5 +	chrX	19472718	intergenic	not near genes	chrX_6_19470001	chrX_19470001	RAL-340_100b
4273	chrX	19472128	19472135	chrX	19472711	19472729	jockey	6	592	9.5	14.5	12.0	0.5	601	chrX	19472128	intergenic	kek5 +	chrX	19472428	intergenic	not near genes	chrX	19472729	intergenic	not near genes	chrX_6_19470001	chrX_19470001	RAL-340_100b
4274	chrX	19472146	19472157	chrX	19472698	19472751	jockey	5	573	5.0	10.0	7.5	0.6	605	chrX	19472146	intergenic	kek5 +	chrX	19472448	intergenic	not near genes	chrX	19472751	intergenic	not near genes	chrX_5_19470001	chrX_19470001	RAL-340_100b
4282	chrX	19710048	19710104	chrX	19711859	19711905	S-element	20	1803	5.5	6.0	5.8	2.9	1857	chrX	19710048	intron	meso18E -	chrX	19710976	intron	meso18E -	chrX	19711905	intron	meso18E -	chrX_20_19710001	chrX_19710001	RAL-340_100b
4283	chrX	12946233	12946235	chrX	19741476	19741476	roo	4	6795242	35.5	87.5	61.5	0.1	6795243	chrX	12946233	3` UTR	fne +	chrX	16343854	intergenic	not near genes	chrX	19741476	intron,3` UTR	CoVIb -,CG18809 -	chrX_4_16340001	chrX_16340001	RAL-340_100b
4285	chrX	19797326	19797334	chrX	19804663	19804672	Stalker4	7	7338	49.5	15.5	32.5	0.2	7346	chrX	19797326	intergenic	not near genes	chrX	19800999	intergenic	not near genes	chrX	19804672	intergenic	not near genes	chrX_7_19800001	chrX_19800001	RAL-340_100b
4300	chrX	20144464	20144471	chrX	21085284	21085291	INE-1	5	940820	18.5	35.5	27.0	0.2	940827	chrX	20144464	intergenic	not near genes	chrX	20614878	intron	RunxA -	chrX	21085291	intergenic	not near genes	chrX_5_20610001	chrX_20610001	RAL-340_100b
4307	chrX	20377325	20377329	chrX	20378817	20378821	hobo	6	1492	24.5	32.5	28.5	0.2	1496	chrX	20377325	intergenic	not near genes	chrX	20378073	intergenic	not near genes	chrX	20378821	intergenic	not near genes	chrX_6_20375001	chrX_20375001	RAL-340_100b
4308	chrX	20377330	20377336	chrX	20378814	20378828	hobo	5	1490	20.5	31.0	25.8	0.2	1498	chrX	20377330	intergenic	not near genes	chrX	20378079	intergenic	not near genes	chrX	20378828	intergenic	not near genes	chrX_5_20375001	chrX_20375001	RAL-340_100b
4309	chrX	20377337	20377346	chrX	20378800	20378822	hobo	10	1484	16.5	26.5	21.5	0.4	1485	chrX	20377337	intergenic	not near genes	chrX	20378080	intergenic	not near genes	chrX	20378822	intergenic	not near genes	chrX_10_20375001	chrX_20375001	RAL-340_100b
4323	chrX	20940704	20940744	chrX	20942191	20942222	hobo	40	1490	11.0	10.5	10.8	3.4	1518	chrX	20940704	intergenic	not near genes	chrX	20941463	intergenic	not near genes	chrX	20942222	intergenic	not near genes	chrX_40_20940001	chrX_20940001	RAL-340_100b
4332	chrX	21061833	21061866	chrX	21062347	21062376	roo	6	504	15.5	15.0	15.2	0.4	543	chrX	21061833	intron	bves +	chrX	21062104	intron	bves +	chrX	21062376	intron,3` UTR	bves +,CG32512 -	chrX_6_21060001	chrX_21060001	RAL-340_100b
4333	chrX	21061871	21061896	chrX	21062370	21062401	roo	19	508	8.5	22.0	15.2	1.2	530	chrX	21061871	intron	bves +	chrX	21062136	intron	bves +	chrX	21062401	intron,3` UTR	bves +,CG32512 -	chrX_19_21060001	chrX_21060001	RAL-340_100b
4339	chrX	21086116	21086137	chrX	21087170	21087191	jockey	11	1054	8.0	5.0	6.5	1.5	1075	chrX	21086116	intergenic	not near genes	chrX	21086654	intergenic	not near genes	chrX	21087191	intergenic	not near genes	chrX_11_21085001	chrX_21085001	RAL-340_100b
4340	chrX	21086139	21086157	chrX	21087161	21087211	jockey	8	1049	6.5	2.5	4.5	1.5	1072	chrX	21086139	intergenic	not near genes	chrX	21086675	intergenic	not near genes	chrX	21087211	intergenic	not near genes	chrX_8_21085001	chrX_21085001	RAL-340_100b
4353	chrX	21458679	21458719	chrX	21464140	21464175	Ivk	20	5458	4.5	8.5	6.5	2.7	5496	chrX	21458679	intergenic	not near genes	chrX	21461427	intergenic	not near genes	chrX	21464175	intergenic	not near genes	chrX_20_21460001	chrX_21460001	RAL-340_100b
4360	chrX	22564564	22564583	chrX	22575111	22575130	jockey	10	10547	23.5	16.0	19.8	0.5	10566	chrX	22564564	intergenic	not near genes	chrX	22569847	intergenic	not near genes	chrX	22575130	intergenic	not near genes	chrX_10_22565001	chrX_22565001	RAL-340_100b
4369	chrX	22681464	22681514	chrX	22688941	22688980	HMS-Beagle2	7	7479	1.0	6.0	3.5	1.6	7516	chrX	22681464	intron	CR44997 +	chrX	22685222	intron	CR44997 +	chrX	22688980	intron	CR44997 +	chrX_7_22685001	chrX_22685001	RAL-340_100b
4371	chrX	22697482	22697514	chrX	22701793	22701831	Juan	10	4320	14.0	13.5	13.8	0.7	4349	chrX	22697482	intron	CR44997 +	chrX	22699656	intron	CR44997 +	chrX	22701831	intron	CR44997 +	chrX_10_22695001	chrX_22695001	RAL-340_100b
4372	chrX	22771483	22771535	chrX	22774799	22774830	297	13	3309	7.0	11.0	9.0	1.3	3347	chrX	22771483	intron	CR44997 +	chrX	22773156	intron	CR44997 +	chrX	22774830	intron	CR44997 +	chrX_13_22770001	chrX_22770001	RAL-340_100b
4376	chrX	22987085	22987132	chrX	22989764	22989801	Burdock	17	2680	4.5	8.0	6.2	2.4	2716	chrX	22987085	intron,intron	stnA -,stnB -	chrX	22988443	intron,intron	stnA -,stnB -	chrX	22989801	intron,intron	stnA -,stnB -	chrX_17_22985001	chrX_22985001	RAL-340_100b
4378	chrX	22996311	22996339	chrX	23003568	23003596	roo	14	7256	9.0	12.5	10.8	1.2	7285	chrX	22996311	intron,intron	stnA -,stnB -	chrX	22999954	intron,intron	stnA -,stnB -	chrX	23003596	intron,intron	stnA -,stnB -	chrX_14_22995001	chrX_22995001	RAL-340_100b
4379	chrX	22967493	22967583	chrX	23154543	23154688	diver	4	187074	15.5	22.5	19.0	0.2	187195	chrX	22967493	intergenic	not near genes	chrX	23061090	intergenic	not near genes	chrX	23154688	intergenic	not near genes	chrX_4_23060001	chrX_23060001	RAL-340_100b
4384	chrY	381076	381113	chrY	1618887	1618897	invader6	5	1237786	3.0	0.0	1.5	2.0	1237821	chrY	381076	intergenic	not near genes	chrY	999986	intergenic	Su(Ste):CR42438 -	chrY	1618897	intergenic	not near genes	chrY_5_995001	chrY_995001	RAL-340_100b