SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 47445 47461 chr2L 52572 52591 jockey 11 5127 23.0 10.0 16.5 0.6 5146 chr2L 47445 intron Cda5 - chr2L 50018 intron Cda5 - chr2L 52591 intron Cda5 - chr2L_11_50001 chr2L_50001 RAL-340_100b 2 chr2L 47462 47481 chr2L 52569 52611 jockey 14 5124 14.5 10.0 12.2 1.1 5149 chr2L 47462 intron Cda5 - chr2L 50036 intron Cda5 - chr2L 52611 intron Cda5 - chr2L_14_50001 chr2L_50001 RAL-340_100b 3 chr2L 263278 263319 chr2L 263449 263490 27 170 9.0 15.0 12.0 2.1 212 chr2L 263278 intron,3` UTR CG3645 -,CG17075 - chr2L 263384 intron,3` UTR CG3645 -,CG17075 - chr2L 263490 intron,3` UTR CG3645 -,CG17075 - chr2L_27_260001 chr2L_260001 RAL-340_100b 4 chr2L 325133 325150 chr2L 325210 325240 9 90 14.0 13.5 13.8 0.6 107 chr2L 325133 intron Plc21C + chr2L 325186 intron Plc21C + chr2L 325240 intron Plc21C + chr2L_9_325001 chr2L_325001 RAL-340_100b 5 chr2L 339410 339417 chr2L 339764 339771 4 354 26.5 7.0 16.8 0.2 361 chr2L 339410 exon Plc21C + chr2L 339590 intron Plc21C + chr2L 339771 intron Plc21C + chr2L_4_335001 chr2L_335001 RAL-340_100b 6 chr2L 339418 339451 chr2L 339761 339803 15 349 11.5 5.5 8.5 1.6 385 chr2L 339418 exon Plc21C + chr2L 339610 intron Plc21C + chr2L 339803 intron Plc21C + chr2L_15_335001 chr2L_335001 RAL-340_100b 7 chr2L 347868 347918 chr2L 355393 355442 blood 20 7523 6.5 11.0 8.8 2.0 7574 chr2L 347868 3` UTR Plc21C + chr2L 351655 intron Plc21C + chr2L 355442 3` UTR Plc21C + chr2L_20_350001 chr2L_350001 RAL-340_100b 8 chr2L 371418 371456 chr2L 371522 371560 11 102 5.5 9.0 7.2 1.3 142 chr2L 371418 intergenic not near genes chr2L 371489 intergenic not near genes chr2L 371560 intergenic not near genes chr2L_11_370001 chr2L_370001 RAL-340_100b 9 chr2L 407930 407952 chr2L 408031 408058 8 105 9.5 5.0 7.2 1.0 128 chr2L 407930 3` UTR RpI135 + chr2L 407994 intergenic RpI135 +,AP-2alpha - chr2L 408058 3` UTR AP-2alpha - chr2L_8_405001 chr2L_405001 RAL-340_100b 10 chr2L 407956 407972 chr2L 408029 408078 4 95 5.5 5.0 5.2 0.6 122 chr2L 407956 3` UTR RpI135 + chr2L 408017 intergenic AP-2alpha -,RpI135 + chr2L 408078 3` UTR AP-2alpha - chr2L_4_405001 chr2L_405001 RAL-340_100b 11 chr2L 436852 436876 chr2L 436950 436971 12 98 13.5 9.0 11.2 1.0 119 chr2L 436852 intron ex + chr2L 436912 intron ex + chr2L 436971 intron ex + chr2L_12_435001 chr2L_435001 RAL-340_100b 12 chr2L 438107 438148 chr2L 438233 438259 13 122 9.5 8.5 9.0 1.3 152 chr2L 438107 intron ex + chr2L 438183 intron ex + chr2L 438259 intron ex + chr2L_13_435001 chr2L_435001 RAL-340_100b 13 chr2L 587692 587692 chr2L 588744 588794 27 1061 52.5 78.5 65.5 0.4 1102 chr2L 587692 intron Gsc - chr2L 588243 intron Gsc - chr2L 588794 intron Gsc - chr2L_27_585001 chr2L_585001 RAL-340_100b 14 chr2L 597180 597184 chr2L 597287 597305 4 111 58.0 48.0 53.0 0.1 125 chr2L 597180 intergenic not near genes chr2L 597242 intergenic not near genes chr2L 597305 intergenic not near genes chr2L_4_595001 chr2L_595001 RAL-340_100b 15 chr2L 597171 597197 chr2L 597310 597315 5 127 54.0 43.0 48.5 0.1 144 chr2L 597171 intergenic not near genes chr2L 597243 intergenic not near genes chr2L 597315 intergenic not near genes chr2L_5_595001 chr2L_595001 RAL-340_100b 16 chr2L 628470 628489 chr2L 628619 628638 8 148 17.5 4.0 10.8 0.7 168 chr2L 628470 intergenic CR45369 +,CG2839 + chr2L 628554 intergenic CR45369 +,CG2839 + chr2L 628638 intergenic CR45369 +,CG2839 + chr2L_8_625001 chr2L_625001 RAL-340_100b 17 chr2L 628495 628524 chr2L 628618 628670 17 141 6.0 4.0 5.0 2.8 175 chr2L 628495 intergenic CR45369 +,CG2839 + chr2L 628582 intergenic CR45369 +,CG2839 + chr2L 628670 intergenic CR45369 +,CG2839 + chr2L_17_625001 chr2L_625001 RAL-340_100b 18 chr2L 686915 686919 chr2L 695980 695984 roo 4 9065 16.0 12.0 14.0 0.3 9069 chr2L 686915 intron ds - chr2L 691450 intron ds - chr2L 695984 intron ds - chr2L_4_690001 chr2L_690001 RAL-340_100b 19 chr2L 686920 686920 chr2L 695969 695984 roo 4 9059 16.0 11.5 13.8 0.3 9064 chr2L 686920 intron ds - chr2L 691452 intron ds - chr2L 695984 intron ds - chr2L_4_690001 chr2L_690001 RAL-340_100b 20 chr2L 686921 686944 chr2L 695965 696008 roo 17 9061 14.0 11.0 12.5 1.3 9087 chr2L 686921 intron ds - chr2L 691464 intron ds - chr2L 696008 intron ds - chr2L_17_690001 chr2L_690001 RAL-340_100b 21 chr2L 741253 741260 chr2L 744766 744773 6 3514 74.0 119.0 96.5 0.1 3520 chr2L 741253 intron Eaat2 - chr2L 743013 intron Eaat2 - chr2L 744773 intergenic Eaat2 - chr2L_6_740001 chr2L_740001 RAL-340_100b 22 chr2L 741248 741305 chr2L 744776 744818 18 3520 92.5 115.0 103.8 0.2 3570 chr2L 741248 intron Eaat2 - chr2L 743033 intron Eaat2 - chr2L 744818 intergenic Eaat2 - chr2L_18_740001 chr2L_740001 RAL-340_100b 23 chr2L 770444 770478 chr2L 772250 772254 Bari1 10 1799 9.5 4.0 6.8 1.3 1810 chr2L 770444 intergenic not near genes chr2L 771349 intergenic not near genes chr2L 772254 intergenic CR44614 + chr2L_10_770001 chr2L_770001 RAL-340_100b 24 chr2L 777443 777496 chr2L 777544 777590 10 103 13.5 7.5 10.5 0.9 147 chr2L 777443 intergenic not near genes chr2L 777516 intergenic not near genes chr2L 777590 intergenic not near genes chr2L_10_775001 chr2L_775001 RAL-340_100b 25 chr2L 791431 791480 chr2L 791540 791578 31 115 9.0 6.5 7.8 3.5 147 chr2L 791431 intergenic not near genes chr2L 791504 intergenic not near genes chr2L 791578 intergenic not near genes chr2L_31_790001 chr2L_790001 RAL-340_100b 26 chr2L 849447 849469 chr2L 849563 849578 20 112 32.0 19.0 25.5 0.8 131 chr2L 849447 intron drongo - chr2L 849512 intron drongo - chr2L 849578 intron drongo - chr2L_20_845001 chr2L_845001 RAL-340_100b 27 chr2L 849472 849487 chr2L 849562 849602 16 105 23.0 18.0 20.5 0.7 130 chr2L 849472 intron drongo - chr2L 849537 intron drongo - chr2L 849602 intron drongo - chr2L_16_845001 chr2L_845001 RAL-340_100b 28 chr2L 919909 919928 chr2L 920008 920029 7 99 8.0 1.5 4.8 1.2 120 chr2L 919909 intergenic not near genes chr2L 919969 intergenic not near genes chr2L 920029 intergenic not near genes chr2L_7_915001 chr2L_915001 RAL-340_100b 29 chr2L 922439 922484 chr2L 922545 922585 13 101 8.5 5.5 7.0 1.6 146 chr2L 922439 intergenic CG4341 + chr2L 922512 intergenic CG4341 + chr2L 922585 intergenic CG4341 + chr2L_13_920001 chr2L_920001 RAL-340_100b 30 chr2L 936570 936584 chr2L 936684 936699 7 114 6.0 2.0 4.0 1.4 129 chr2L 936570 intron CG4341 + chr2L 936634 intron CG4341 + chr2L 936699 intron CG4341 + chr2L_7_935001 chr2L_935001 RAL-340_100b 31 chr2L 976864 976907 chr2L 984516 984547 roo 21 7656 10.5 15.0 12.8 1.5 7683 chr2L 976864 intergenic not near genes chr2L 980706 intergenic not near genes chr2L 984547 intergenic not near genes chr2L_21_980001 chr2L_980001 RAL-340_100b 32 chr2L 996698 996752 chr2L 1005818 1005872 roo 26 9119 2.5 5.5 4.0 5.2 9174 chr2L 996698 intergenic not near genes chr2L 1001285 intergenic not near genes chr2L 1005872 intergenic not near genes chr2L_26_1000001 chr2L_1000001 RAL-340_100b 33 chr2L 1022991 1023037 chr2L 1023095 1023142 34 101 8.5 9.0 8.8 3.5 151 chr2L 1022991 intron IA-2 - chr2L 1023066 intron IA-2 - chr2L 1023142 intron IA-2 - chr2L_34_1020001 chr2L_1020001 RAL-340_100b 34 chr2L 1028841 1028873 chr2L 1028951 1028998 10 111 6.0 4.0 5.0 1.7 157 chr2L 1028841 intron IA-2 - chr2L 1028920 intron IA-2 - chr2L 1028998 intron IA-2 - chr2L_10_1025001 chr2L_1025001 RAL-340_100b 35 chr2L 1042595 1042622 chr2L 1042697 1042705 9 97 8.5 0.0 4.2 1.7 110 chr2L 1042595 intron IA-2 - chr2L 1042650 intron IA-2 - chr2L 1042705 intron IA-2 - chr2L_9_1040001 chr2L_1040001 RAL-340_100b 36 chr2L 1156844 1156888 chr2L 1156974 1157018 10 124 8.5 14.5 11.5 0.8 174 chr2L 1156844 intron capt - chr2L 1156931 intron capt - chr2L 1157018 intron capt - chr2L_10_1155001 chr2L_1155001 RAL-340_100b 37 chr2L 1156889 1156895 chr2L 1156968 1157025 5 108 7.0 12.0 9.5 0.5 136 chr2L 1156889 intron capt - chr2L 1156957 intron capt - chr2L 1157025 intron capt - chr2L_5_1155001 chr2L_1155001 RAL-340_100b 38 chr2L 1164227 1164253 chr2L 1164338 1164364 22 109 20.0 9.5 14.8 1.4 137 chr2L 1164227 intergenic IntS14 +,CG5080 - chr2L 1164296 intergenic IntS14 +,CG5080 - chr2L 1164364 intergenic IntS14 +,CG5080 - chr2L_22_1160001 chr2L_1160001 RAL-340_100b 39 chr2L 1164254 1164279 chr2L 1164337 1164390 12 106 7.0 9.5 8.2 1.3 136 chr2L 1164254 intergenic IntS14 +,CG5080 - chr2L 1164322 intergenic IntS14 +,CG5080 - chr2L 1164390 intergenic IntS14 + chr2L_12_1160001 chr2L_1160001 RAL-340_100b 40 chr2L 1178654 1178684 chr2L 1178762 1178793 11 109 7.0 5.0 6.0 1.6 139 chr2L 1178654 intron CG4896 + chr2L 1178724 intron CG4896 + chr2L 1178793 intron CG4896 + chr2L_11_1175001 chr2L_1175001 RAL-340_100b 41 chr2L 1178689 1178708 chr2L 1178761 1178807 9 103 4.0 4.5 4.2 1.7 118 chr2L 1178689 intron CG4896 + chr2L 1178748 intron CG4896 + chr2L 1178807 intron CG4896 + chr2L_9_1175001 chr2L_1175001 RAL-340_100b 42 chr2L 1199855 1199863 chr2L 1199988 1199996 5 131 2.0 10.5 6.2 0.7 141 chr2L 1199855 3` UTR CG43348 + chr2L 1199926 intergenic CG43348 +,CG43349 + chr2L 1199996 intergenic CG43348 +,CG43349 + chr2L_5_1195001 chr2L_1195001 RAL-340_100b 43 chr2L 1220114 1220153 chr2L 1227599 1227644 blood 19 7487 10.5 7.0 8.8 1.9 7530 chr2L 1220114 intron CG42329 + chr2L 1223879 intron CG42329 + chr2L 1227644 intron CG42329 + chr2L_19_1220001 chr2L_1220001 RAL-340_100b 44 chr2L 1237960 1238003 chr2L 1238068 1238112 7 107 6.0 2.0 4.0 1.4 152 chr2L 1237960 intergenic not near genes chr2L 1238036 intergenic not near genes chr2L 1238112 intergenic not near genes chr2L_7_1235001 chr2L_1235001 RAL-340_100b 45 chr2L 1258128 1258167 chr2L 1258236 1258257 15 106 8.0 8.0 8.0 1.7 129 chr2L 1258128 intron robo3 + chr2L 1258192 intron robo3 + chr2L 1258257 intron robo3 + chr2L_15_1255001 chr2L_1255001 RAL-340_100b 46 chr2L 1312846 1312902 chr2L 1312958 1313003 10 106 4.0 10.0 7.0 1.2 157 chr2L 1312846 intergenic not near genes chr2L 1312924 intergenic not near genes chr2L 1313003 intergenic not near genes chr2L_10_1310001 chr2L_1310001 RAL-340_100b 47 chr2L 1322006 1322016 chr2L 1322120 1322130 4 114 13.0 7.0 10.0 0.4 124 chr2L 1322006 intergenic not near genes chr2L 1322068 intergenic not near genes chr2L 1322130 intergenic not near genes chr2L_4_1320001 chr2L_1320001 RAL-340_100b 48 chr2L 1322017 1322043 chr2L 1322116 1322157 14 99 7.5 6.5 7.0 1.8 140 chr2L 1322017 intergenic not near genes chr2L 1322087 intergenic not near genes chr2L 1322157 intergenic not near genes chr2L_14_1320001 chr2L_1320001 RAL-340_100b 49 chr2L 1336917 1336955 chr2L 1337185 1337185 22 265 11.5 6.5 9.0 2.2 268 chr2L 1336917 intergenic not near genes chr2L 1337051 intergenic not near genes chr2L 1337185 intergenic not near genes chr2L_22_1335001 chr2L_1335001 RAL-340_100b 50 chr2L 1531105 1531127 chr2L 1531220 1531237 8 111 7.0 7.5 7.2 1.0 132 chr2L 1531105 intergenic not near genes chr2L 1531171 intergenic not near genes chr2L 1531237 intergenic not near genes chr2L_8_1530001 chr2L_1530001 RAL-340_100b 51 chr2L 1536504 1536526 chr2L 1536656 1536671 10 153 0.0 8.0 4.0 2.0 167 chr2L 1536504 intergenic not near genes chr2L 1536588 intergenic not near genes chr2L 1536671 intergenic not near genes chr2L_10_1535001 chr2L_1535001 RAL-340_100b 52 chr2L 1552649 1552651 chr2L 1552894 1552897 4 246 32.0 0.0 16.0 0.2 248 chr2L 1552649 intergenic not near genes chr2L 1552773 intergenic not near genes chr2L 1552897 intergenic not near genes chr2L_4_1550001 chr2L_1550001 RAL-340_100b 53 chr2L 1552653 1552696 chr2L 1552899 1552901 9 240 13.0 0.0 6.5 1.2 248 chr2L 1552653 intergenic not near genes chr2L 1552777 intergenic not near genes chr2L 1552901 intergenic not near genes chr2L_9_1550001 chr2L_1550001 RAL-340_100b 54 chr2L 1570667 1570700 chr2L 1573564 1573597 F-element 18 2894 22.0 11.5 16.8 1.0 2930 chr2L 1570667 intron haf + chr2L 1572132 intron haf + chr2L 1573597 intron haf + chr2L_18_1570001 chr2L_1570001 RAL-340_100b 55 chr2L 1570702 1570716 chr2L 1573559 1573613 F-element 8 2886 14.5 10.5 12.5 0.6 2911 chr2L 1570702 intron haf + chr2L 1572158 intron haf + chr2L 1573613 intron haf + chr2L_8_1570001 chr2L_1570001 RAL-340_100b 56 chr2L 1590937 1590984 chr2L 1591038 1591085 22 99 10.0 8.0 9.0 2.2 148 chr2L 1590937 intron haf + chr2L 1591011 intron haf + chr2L 1591085 intron haf + chr2L_22_1590001 chr2L_1590001 RAL-340_100b 57 chr2L 1634741 1634763 chr2L 1634857 1634876 7 112 10.0 8.0 9.0 0.7 135 chr2L 1634741 intergenic not near genes chr2L 1634808 intergenic not near genes chr2L 1634876 intergenic not near genes chr2L_7_1630001 chr2L_1630001 RAL-340_100b 58 chr2L 1678953 1678991 chr2L 1686443 1686481 blood 13 7481 13.5 7.5 10.5 1.1 7528 chr2L 1678953 intron chinmo + chr2L 1682717 intron chinmo + chr2L 1686481 intron chinmo + chr2L_13_1680001 chr2L_1680001 RAL-340_100b 59 chr2L 1711355 1711363 chr2L 1711683 1711695 mdg3 6 338 11.0 11.0 11.0 0.5 340 chr2L 1711355 3` UTR,3` UTR mRpL48 +,frtz - chr2L 1711525 3` UTR frtz - chr2L 1711695 3` UTR frtz - chr2L_6_1710001 chr2L_1710001 RAL-340_100b 60 chr2L 1711364 1711384 chr2L 1711680 1711693 mdg3 12 340 7.0 10.5 8.8 1.2 329 chr2L 1711364 3` UTR,3` UTR mRpL48 +,frtz - chr2L 1711528 3` UTR frtz - chr2L 1711693 3` UTR frtz - chr2L_12_1710001 chr2L_1710001 RAL-340_100b 61 chr2L 1721811 1721853 chr2L 1721915 1721946 15 103 2.5 5.5 4.0 3.0 135 chr2L 1721811 intron Rim2 - chr2L 1721878 intron Rim2 - chr2L 1721946 intron Rim2 - chr2L_15_1720001 chr2L_1720001 RAL-340_100b 62 chr2L 1828376 1828432 chr2L 1828485 1828537 34 108 5.0 5.5 5.2 5.5 161 chr2L 1828376 intergenic not near genes chr2L 1828456 intergenic not near genes chr2L 1828537 intergenic not near genes chr2L_34_1825001 chr2L_1825001 RAL-340_100b 63 chr2L 1883393 1883447 chr2L 1884001 1884052 15 604 4.0 3.0 3.5 3.3 659 chr2L 1883393 intron CG15358 - chr2L 1883722 intron CG15358 - chr2L 1884052 exon CG15358 - chr2L_15_1880001 chr2L_1880001 RAL-340_100b 64 chr2L 1910514 1910568 chr2L 1910628 1910668 27 112 10.0 6.5 8.2 2.9 154 chr2L 1910514 intron CG7337 + chr2L 1910591 intron CG7337 + chr2L 1910668 intron CG7337 + chr2L_27_1910001 chr2L_1910001 RAL-340_100b 65 chr2L 1957057 1957106 chr2L 1957161 1957210 26 102 9.0 6.0 7.5 3.1 153 chr2L 1957057 intron erm - chr2L 1957134 intron erm - chr2L 1957210 intron erm - chr2L_26_1955001 chr2L_1955001 RAL-340_100b 66 chr2L 2007843 2007873 chr2L 2007976 2007984 10 129 6.5 6.0 6.2 1.4 141 chr2L 2007843 intergenic CR45712 + chr2L 2007914 intergenic CR45712 +,Nplp4 + chr2L 2007984 intergenic CR45712 +,Nplp4 + chr2L_10_2005001 chr2L_2005001 RAL-340_100b 67 chr2L 2021107 2021125 chr2L 2021263 2021263 6 160 10.5 7.0 8.8 0.6 156 chr2L 2021107 intron CG4238 + chr2L 2021185 intron CG4238 + chr2L 2021263 intron CG4238 + chr2L_6_2020001 chr2L_2020001 RAL-340_100b 68 chr2L 2021126 2021139 chr2L 2021257 2021299 8 154 2.0 6.5 4.2 1.5 173 chr2L 2021126 intron CG4238 + chr2L 2021212 intron CG4238 + chr2L 2021299 intron CG4238 + chr2L_8_2020001 chr2L_2020001 RAL-340_100b 69 chr2L 2021368 2021417 chr2L 2021673 2021725 11 307 4.0 6.0 5.0 1.8 357 chr2L 2021368 intron CG4238 + chr2L 2021546 intron CG4238 + chr2L 2021725 intron CG4238 + chr2L_11_2020001 chr2L_2020001 RAL-340_100b 70 chr2L 2049196 2049239 chr2L 2049300 2049348 16 98 1.0 6.0 3.5 3.6 152 chr2L 2049196 intergenic not near genes chr2L 2049272 intergenic not near genes chr2L 2049348 intergenic not near genes chr2L_16_2045001 chr2L_2045001 RAL-340_100b 71 chr2L 2073327 2073355 chr2L 2073435 2073463 10 105 27.5 36.5 32.0 0.3 136 chr2L 2073327 intron dpr3 - chr2L 2073395 intron dpr3 - chr2L 2073463 intron dpr3 - chr2L_10_2070001 chr2L_2070001 RAL-340_100b 72 chr2L 2086387 2086556 chr2L 16217660 16217660 4 14131165 62.5 70.5 66.5 0.1 14131273 chr2L 2086387 intron dpr3 - chr2L 9152024 intron CG32982 + chr2L 16217660 intergenic not near genes chr2L_4_9150001 chr2L_9150001 RAL-340_100b 73 chr2L 2100376 2100391 chr2L 2109540 2109547 roo 9 9164 13.5 12.5 13.0 0.6 9171 chr2L 2100376 intron dpr3 - chr2L 2104962 intron dpr3 - chr2L 2109547 intron dpr3 - chr2L_9_2100001 chr2L_2100001 RAL-340_100b 74 chr2L 2100394 2100406 chr2L 2109529 2109552 roo 6 9150 6.5 10.5 8.5 0.6 9158 chr2L 2100394 intron dpr3 - chr2L 2104973 intron dpr3 - chr2L 2109552 intron dpr3 - chr2L_6_2100001 chr2L_2100001 RAL-340_100b 75 chr2L 2112119 2112146 chr2L 2119773 2119802 opus 18 7656 2.0 10.5 6.2 2.5 7683 chr2L 2112119 intergenic not near genes chr2L 2115960 intergenic not near genes chr2L 2119802 intergenic not near genes chr2L_18_2115001 chr2L_2115001 RAL-340_100b 76 chr2L 2175926 2175983 chr2L 2176029 2176086 19 99 6.0 3.5 4.8 3.3 160 chr2L 2175926 intron aop - chr2L 2176006 intron aop - chr2L 2176086 intron aop - chr2L_19_2175001 chr2L_2175001 RAL-340_100b 77 chr2L 2244441 2244498 chr2L 2244580 2244637 12 131 3.5 6.0 4.8 2.1 196 chr2L 2244441 3` UTR CG4267 + chr2L 2244539 3` UTR CG4267 + chr2L 2244637 3` UTR CG4267 + chr2L_12_2240001 chr2L_2240001 RAL-340_100b 78 chr2L 2250394 2250441 chr2L 2251186 2251222 13 786 9.0 0.0 4.5 2.4 828 chr2L 2250394 intergenic Ser12 - chr2L 2250808 exon Ser12 - chr2L 2251222 exon Ser12 - chr2L_13_2250001 chr2L_2250001 RAL-340_100b 79 chr2L 2260782 2260839 chr2L 2260893 2260920 23 105 7.5 8.0 7.8 2.6 138 chr2L 2260782 intergenic not near genes chr2L 2260851 intergenic not near genes chr2L 2260920 intergenic not near genes chr2L_23_2260001 chr2L_2260001 RAL-340_100b 80 chr2L 2262286 2262298 chr2L 2262388 2262399 7 101 23.0 3.0 13.0 0.5 113 chr2L 2262286 intergenic not near genes chr2L 2262342 intergenic not near genes chr2L 2262399 intergenic not near genes chr2L_7_2260001 chr2L_2260001 RAL-340_100b 81 chr2L 2262299 2262336 chr2L 2262384 2262438 18 94 8.5 3.5 6.0 2.6 139 chr2L 2262299 intergenic not near genes chr2L 2262368 intergenic not near genes chr2L 2262438 intergenic not near genes chr2L_18_2260001 chr2L_2260001 RAL-340_100b 82 chr2L 2282958 2283014 chr2L 2283143 2283199 26 181 7.0 7.5 7.2 3.2 241 chr2L 2282958 intergenic not near genes chr2L 2283078 intergenic not near genes chr2L 2283199 intergenic not near genes chr2L_26_2280001 chr2L_2280001 RAL-340_100b 83 chr2L 2290555 2290611 chr2L 2290656 2290705 13 96 3.0 5.0 4.0 2.6 150 chr2L 2290555 exon robl22E - chr2L 2290630 5` UTR robl22E - chr2L 2290705 5` UTR robl22E - chr2L_13_2290001 chr2L_2290001 RAL-340_100b 84 chr2L 2294031 2294046 chr2L 2299250 2299276 copia 8 5223 10.5 6.0 8.2 0.9 5245 chr2L 2294031 intergenic not near genes chr2L 2296654 intergenic not near genes chr2L 2299276 intergenic not near genes chr2L_8_2295001 chr2L_2295001 RAL-340_100b 85 chr2L 2302028 2302073 chr2L 2302135 2302166 17 106 10.5 7.5 9.0 1.7 138 chr2L 2302028 intergenic not near genes chr2L 2302097 intergenic not near genes chr2L 2302166 intergenic not near genes chr2L_17_2300001 chr2L_2300001 RAL-340_100b 86 chr2L 2311046 2311089 chr2L 2311167 2311210 7 117 6.0 6.5 6.2 1.0 164 chr2L 2311046 intron CG9967 - chr2L 2311128 intron CG9967 - chr2L 2311210 intron CG9967 - chr2L_7_2310001 chr2L_2310001 RAL-340_100b 87 chr2L 2317102 2317130 chr2L 2317298 2317326 9 196 33.0 58.0 45.5 0.2 224 chr2L 2317102 intron,intron CG9967 -,eys + chr2L 2317214 intron,intron CG9967 -,eys + chr2L 2317326 intron,intron CG9967 -,eys + chr2L_9_2315001 chr2L_2315001 RAL-340_100b 88 chr2L 2321649 2321707 chr2L 2321754 2321792 29 99 10.0 6.5 8.2 3.2 143 chr2L 2321649 intron,intron CG9967 -,eys + chr2L 2321720 intron,intron CG9967 -,eys + chr2L 2321792 intron,intron CG9967 -,eys + chr2L_29_2320001 chr2L_2320001 RAL-340_100b 89 chr2L 2331599 2331626 chr2L 2331700 2331721 26 100 7.0 4.5 5.8 3.8 122 chr2L 2331599 intron,intron CG9967 -,eys + chr2L 2331660 intron,intron CG9967 -,eys + chr2L 2331721 intron,intron CG9967 -,eys + chr2L_26_2330001 chr2L_2330001 RAL-340_100b 90 chr2L 2337314 2337369 chr2L 2337430 2337482 27 113 11.5 2.5 7.0 3.4 168 chr2L 2337314 intron,intron CG9967 -,eys + chr2L 2337398 intron,intron CG9967 -,eys + chr2L 2337482 intron,intron CG9967 -,eys + chr2L_27_2335001 chr2L_2335001 RAL-340_100b 91 chr2L 2372338 2372400 chr2L 2372449 2372505 7 108 0.0 5.0 2.5 2.0 167 chr2L 2372338 intergenic CG3609 - chr2L 2372422 intergenic CG3609 - chr2L 2372505 3` UTR CG3609 - chr2L_7_2370001 chr2L_2370001 RAL-340_100b 92 chr2L 2544570 2544601 chr2L 2544662 2544702 9 100 5.0 7.0 6.0 1.3 132 chr2L 2544570 intergenic not near genes chr2L 2544636 intergenic not near genes chr2L 2544702 intergenic not near genes chr2L_9_2540001 chr2L_2540001 RAL-340_100b 93 chr2L 2547969 2548011 chr2L 2549152 2549194 9 1184 5.0 49.0 27.0 0.3 1225 chr2L 2547969 intergenic not near genes chr2L 2548582 intergenic not near genes chr2L 2549194 intergenic not near genes chr2L_9_2545001 chr2L_2545001 RAL-340_100b 94 chr2L 2557809 2557847 chr2L 2557919 2557952 14 109 0.0 16.0 8.0 1.6 143 chr2L 2557809 intergenic not near genes chr2L 2557880 intergenic not near genes chr2L 2557952 intergenic not near genes chr2L_14_2555001 chr2L_2555001 RAL-340_100b 95 chr2L 2565517 2565566 chr2L 2571610 2571659 297 14 6091 11.5 4.0 7.8 1.6 6142 chr2L 2565517 exon Cyp309a2 - chr2L 2568588 intron Cyp309a2 - chr2L 2571659 exon Cyp309a2 - chr2L_14_2565001 chr2L_2565001 RAL-340_100b 96 chr2L 2661219 2661221 chr2L 2663031 2663068 I-element 8 1824 10.0 6.5 8.2 0.9 1849 chr2L 2661219 intergenic not near genes chr2L 2662144 intergenic not near genes chr2L 2663068 intergenic not near genes chr2L_8_2660001 chr2L_2660001 RAL-340_100b 97 chr2L 2661223 2661235 chr2L 2663030 2663062 I-element 23 1829 6.0 6.5 6.2 3.2 1839 chr2L 2661223 intergenic not near genes chr2L 2662142 intergenic not near genes chr2L 2663062 intergenic not near genes chr2L_23_2660001 chr2L_2660001 RAL-340_100b 98 chr2L 2698840 2698894 chr2L 2698952 2699006 26 109 1.0 4.5 2.8 6.8 166 chr2L 2698840 intron CG31690 + chr2L 2698923 intron CG31690 + chr2L 2699006 intron CG31690 + chr2L_26_2695001 chr2L_2695001 RAL-340_100b 99 chr2L 2702965 2703008 chr2L 2703185 2703213 17 223 6.5 3.0 4.8 2.9 248 chr2L 2702965 intron CG31690 + chr2L 2703089 intron CG31690 + chr2L 2703213 intron CG31690 + chr2L_17_2700001 chr2L_2700001 RAL-340_100b 100 chr2L 2703422 2703442 chr2L 2703531 2703551 7 107 6.5 22.5 14.5 0.5 129 chr2L 2703422 intron CG31690 + chr2L 2703486 intron CG31690 + chr2L 2703551 intron CG31690 + chr2L_7_2700001 chr2L_2700001 RAL-340_100b 101 chr2L 2724383 2724436 chr2L 2724484 2724537 9 101 2.5 3.5 3.0 2.2 154 chr2L 2724383 intergenic not near genes chr2L 2724460 intergenic not near genes chr2L 2724537 intergenic not near genes chr2L_9_2720001 chr2L_2720001 RAL-340_100b 102 chr2L 2772585 2772630 chr2L 2779194 2779201 297 28 6603 20.5 22.0 21.2 1.3 6616 chr2L 2772585 3` UTR Syt1 - chr2L 2775893 intron Syt1 - chr2L 2779201 3` UTR Syt1 - chr2L_28_2775001 chr2L_2775001 RAL-340_100b 103 chr2L 2782928 2782932 chr2L 2783030 2783034 4 101 7.5 10.0 8.8 0.4 106 chr2L 2782928 intron Syt1 - chr2L 2782981 intron Syt1 - chr2L 2783034 intron Syt1 - chr2L_4_2780001 chr2L_2780001 RAL-340_100b 104 chr2L 2800584 2800609 chr2L 2800692 2800711 5 105 7.0 0.0 3.5 1.1 127 chr2L 2800584 intergenic not near genes chr2L 2800648 intergenic not near genes chr2L 2800711 intergenic not near genes chr2L_5_2800001 chr2L_2800001 RAL-340_100b 105 chr2L 2826515 2826528 chr2L 2826632 2826644 9 115 12.5 4.5 8.5 0.9 129 chr2L 2826515 intron Duox - chr2L 2826580 intron Duox - chr2L 2826644 intron Duox - chr2L_9_2825001 chr2L_2825001 RAL-340_100b 106 chr2L 2826529 2826576 chr2L 2826631 2826686 15 101 2.0 4.5 3.2 3.6 157 chr2L 2826529 intron Duox - chr2L 2826608 intron Duox - chr2L 2826686 intron Duox - chr2L_15_2825001 chr2L_2825001 RAL-340_100b 107 chr2L 2831059 2831085 chr2L 2831190 2831199 6 121 5.5 0.0 2.8 1.6 140 chr2L 2831059 intergenic not near genes chr2L 2831129 intergenic not near genes chr2L 2831199 intergenic not near genes chr2L_6_2830001 chr2L_2830001 RAL-340_100b 108 chr2L 2857799 2857832 chr2L 2857900 2857903 8 93 6.0 2.0 4.0 1.6 104 chr2L 2857799 intron CG2991 + chr2L 2857851 intron CG2991 + chr2L 2857903 intron CG2991 + chr2L_8_2855001 chr2L_2855001 RAL-340_100b 109 chr2L 2923749 2923800 chr2L 2923851 2923896 19 99 9.5 5.5 7.5 2.2 147 chr2L 2923749 intron lilli + chr2L 2923822 intron lilli + chr2L 2923896 intron lilli + chr2L_19_2920001 chr2L_2920001 RAL-340_100b 110 chr2L 2933277 2933324 chr2L 2935479 2935486 pogo 18 2194 7.5 9.5 8.5 1.9 2209 chr2L 2933277 intron lilli + chr2L 2934382 intron lilli + chr2L 2935486 intron lilli + chr2L_18_2930001 chr2L_2930001 RAL-340_100b 111 chr2L 2937391 2937451 chr2L 2937494 2937553 22 97 13.0 13.0 13.0 1.6 162 chr2L 2937391 intron lilli + chr2L 2937472 intron lilli + chr2L 2937553 intron lilli + chr2L_22_2935001 chr2L_2935001 RAL-340_100b 112 chr2L 3073012 3073028 chr2L 3078240 3078256 copia 9 5227 19.0 11.5 15.2 0.6 5244 chr2L 3073012 intron toc - chr2L 3075634 intron toc - chr2L 3078256 intron toc - chr2L_9_3075001 chr2L_3075001 RAL-340_100b 113 chr2L 3073029 3073060 chr2L 3078237 3078288 copia 13 5225 9.5 11.5 10.5 1.1 5259 chr2L 3073029 intron toc - chr2L 3075658 intron toc - chr2L 3078288 intron toc - chr2L_13_3075001 chr2L_3075001 RAL-340_100b 114 chr2L 3108854 3108896 chr2L 3108942 3108998 26 97 6.5 3.5 5.0 4.3 144 chr2L 3108854 exon toc - chr2L 3108926 intron toc - chr2L 3108998 intron toc - chr2L_26_3105001 chr2L_3105001 RAL-340_100b 115 chr2L 3121965 3121967 chr2L 3122072 3122078 4 110 20.5 7.0 13.8 0.3 113 chr2L 3121965 intron toc - chr2L 3122022 intron toc - chr2L 3122078 intron toc - chr2L_4_3120001 chr2L_3120001 RAL-340_100b 116 chr2L 3121969 3121997 chr2L 3122071 3122108 27 107 13.0 7.0 10.0 2.5 139 chr2L 3121969 intron toc - chr2L 3122038 intron toc - chr2L 3122108 intron toc - chr2L_27_3120001 chr2L_3120001 RAL-340_100b 117 chr2L 3147257 3147304 chr2L 3147354 3147399 23 98 11.5 10.5 11.0 1.9 142 chr2L 3147257 3` UTR Mad - chr2L 3147328 3` UTR Mad - chr2L 3147399 3` UTR Mad - chr2L_23_3145001 chr2L_3145001 RAL-340_100b 118 chr2L 3159688 3159695 chr2L 3159789 3159796 4 101 2.5 9.5 6.0 0.6 108 chr2L 3159688 intergenic Mad -,gkt + chr2L 3159742 intergenic Mad -,gkt + chr2L 3159796 intergenic Mad -,gkt + chr2L_4_3155001 chr2L_3155001 RAL-340_100b 119 chr2L 3186448 3186482 chr2L 3186559 3186585 11 110 15.0 6.0 10.5 1.0 137 chr2L 3186448 intron CG34393 - chr2L 3186516 intron CG34393 - chr2L 3186585 intron CG34393 - chr2L_11_3185001 chr2L_3185001 RAL-340_100b 120 chr2L 3186485 3186501 chr2L 3186556 3186612 9 101 9.5 6.0 7.8 1.0 127 chr2L 3186485 intron CG34393 - chr2L 3186548 intron CG34393 - chr2L 3186612 intron CG34393 - chr2L_9_3185001 chr2L_3185001 RAL-340_100b 121 chr2L 3191498 3191546 chr2L 3191599 3191600 11 98 3.5 7.0 5.2 1.8 102 chr2L 3191498 intron CG34393 - chr2L 3191549 intron CG34393 - chr2L 3191600 intron CG34393 - chr2L_11_3190001 chr2L_3190001 RAL-340_100b 122 chr2L 3192185 3192232 chr2L 3192321 3192348 21 131 5.0 8.5 6.8 2.7 163 chr2L 3192185 exon CG34393 - chr2L 3192266 intron CG34393 - chr2L 3192348 intron CG34393 - chr2L_21_3190001 chr2L_3190001 RAL-340_100b 123 chr2L 3233622 3233658 chr2L 3233793 3233834 15 173 4.0 10.5 7.2 1.8 212 chr2L 3233622 intergenic not near genes chr2L 3233728 intergenic not near genes chr2L 3233834 intergenic not near genes chr2L_15_3230001 chr2L_3230001 RAL-340_100b 124 chr2L 3251471 3251523 chr2L 3259060 3259113 springer 12 7589 3.5 13.5 8.5 1.3 7642 chr2L 3251471 intergenic not near genes chr2L 3255292 intergenic not near genes chr2L 3259113 intergenic not near genes chr2L_12_3255001 chr2L_3255001 RAL-340_100b 125 chr2L 3261493 3261499 chr2L 3261605 3261615 5 116 9.0 14.0 11.5 0.4 122 chr2L 3261493 intergenic CR45338 -,CR45337 - chr2L 3261554 intergenic CR45338 -,CR45337 - chr2L 3261615 intergenic CR45338 -,CR45337 - chr2L_5_3260001 chr2L_3260001 RAL-340_100b 126 chr2L 3269262 3269307 chr2L 3269363 3269408 6 101 3.5 8.0 5.8 0.9 146 chr2L 3269262 intergenic CG3347 + chr2L 3269335 intergenic CG3347 + chr2L 3269408 intergenic CG3347 + chr2L_6_3265001 chr2L_3265001 RAL-340_100b 127 chr2L 3272953 3272966 chr2L 3273054 3273067 7 101 2.5 9.5 6.0 1.0 114 chr2L 3272953 intergenic not near genes chr2L 3273010 intergenic not near genes chr2L 3273067 intergenic not near genes chr2L_7_3270001 chr2L_3270001 RAL-340_100b 128 chr2L 3312079 3312094 chr2L 3312207 3312209 4 126 1.5 3.5 2.5 1.1 130 chr2L 3312079 intron CG3277 + chr2L 3312144 intron CG3277 + chr2L 3312209 intron CG3277 + chr2L_4_3310001 chr2L_3310001 RAL-340_100b 129 chr2L 3366999 3367043 chr2L 3367167 3367218 22 171 1.5 7.5 4.5 4.0 219 chr2L 3366999 intron CG34394 - chr2L 3367108 intron CG34394 - chr2L 3367218 intron CG34394 - chr2L_22_3365001 chr2L_3365001 RAL-340_100b 130 chr2L 3388581 3388623 chr2L 3388847 3388885 pogo 13 264 5.5 7.5 6.5 1.7 304 chr2L 3388581 intergenic CG42460 - chr2L 3388733 intergenic CG42460 - chr2L 3388885 intergenic CG42460 -,CR44791 + chr2L_13_3385001 chr2L_3385001 RAL-340_100b 131 chr2L 3475869 3475878 chr2L 3475981 3475987 4 110 19.5 9.5 14.5 0.3 118 chr2L 3475869 5` UTR CR45372 + chr2L 3475928 5` UTR CR45372 + chr2L 3475987 5` UTR CR45372 + chr2L_4_3475001 chr2L_3475001 RAL-340_100b 132 chr2L 3475881 3475925 chr2L 3475980 3476037 22 108 3.5 9.0 6.2 3.1 156 chr2L 3475881 5` UTR CR45372 + chr2L 3475959 5` UTR CR45372 + chr2L 3476037 5` UTR CR45372 + chr2L_22_3475001 chr2L_3475001 RAL-340_100b 133 chr2L 3582888 3582912 chr2L 3582970 3582979 8 94 4.0 7.5 5.8 1.2 91 chr2L 3582888 intergenic not near genes chr2L 3582934 intergenic not near genes chr2L 3582979 intergenic not near genes chr2L_8_3580001 chr2L_3580001 RAL-340_100b 134 chr2L 3601062 3601087 chr2L 3601172 3601180 8 107 22.5 2.0 12.2 0.6 118 chr2L 3601062 intergenic not near genes chr2L 3601121 intergenic not near genes chr2L 3601180 intergenic not near genes chr2L_8_3600001 chr2L_3600001 RAL-340_100b 135 chr2L 3601092 3601120 chr2L 3601197 3601225 9 103 10.0 12.5 11.2 0.7 133 chr2L 3601092 intergenic not near genes chr2L 3601158 intergenic not near genes chr2L 3601225 intergenic not near genes chr2L_9_3600001 chr2L_3600001 RAL-340_100b 136 chr2L 3625012 3625059 chr2L 3625114 3625141 6 95 5.0 7.5 6.2 0.8 129 chr2L 3625012 intron for - chr2L 3625076 intron for - chr2L 3625141 intron for - chr2L_6_3625001 chr2L_3625001 RAL-340_100b 137 chr2L 3632248 3632277 chr2L 3632346 3632379 16 102 3.0 5.5 4.2 3.1 131 chr2L 3632248 intron for - chr2L 3632314 intron for - chr2L 3632379 intron for - chr2L_16_3630001 chr2L_3630001 RAL-340_100b 138 chr2L 3649765 3649774 chr2L 3654992 3655001 copia 5 5227 6.5 9.0 7.8 0.6 5236 chr2L 3649765 intron for - chr2L 3652383 intron for - chr2L 3655001 intron for - chr2L_5_3650001 chr2L_3650001 RAL-340_100b 139 chr2L 3649777 3649806 chr2L 3654988 3655033 copia 24 5223 6.0 8.5 7.2 2.9 5256 chr2L 3649777 intron for - chr2L 3652405 intron for - chr2L 3655033 intron for - chr2L_24_3650001 chr2L_3650001 RAL-340_100b 140 chr2L 3686033 3686048 chr2L 3686132 3686161 6 109 3.0 7.5 5.2 1.0 128 chr2L 3686033 intron CG34340 + chr2L 3686097 intron CG34340 + chr2L 3686161 intron CG34340 + chr2L_6_3685001 chr2L_3685001 RAL-340_100b 141 chr2L 3707543 3707594 chr2L 3707651 3707703 21 107 8.5 8.0 8.2 2.3 160 chr2L 3707543 exon cutlet - chr2L 3707623 intron cutlet - chr2L 3707703 intron cutlet - chr2L_21_3705001 chr2L_3705001 RAL-340_100b 142 chr2L 3724745 3724769 chr2L 3724841 3724873 11 101 5.0 33.0 19.0 0.6 128 chr2L 3724745 intron Shaw + chr2L 3724809 intron Shaw + chr2L 3724873 intron Shaw + chr2L_11_3720001 chr2L_3720001 RAL-340_100b 143 chr2L 3729161 3729195 chr2L 3729273 3729318 10 118 7.0 5.5 6.2 1.4 157 chr2L 3729161 intergenic Shaw + chr2L 3729240 intergenic Shaw + chr2L 3729318 intergenic Shaw + chr2L_10_3725001 chr2L_3725001 RAL-340_100b 144 chr2L 3783225 3783239 chr2L 3783341 3783355 5 115 21.0 2.5 11.8 0.4 130 chr2L 3783225 exon bowl + chr2L 3783290 3` UTR bowl + chr2L 3783355 3` UTR bowl + chr2L_5_3780001 chr2L_3780001 RAL-340_100b 145 chr2L 3783244 3783278 chr2L 3783350 3783394 15 113 8.5 4.5 6.5 2.0 150 chr2L 3783244 exon bowl + chr2L 3783319 3` UTR bowl + chr2L 3783394 3` UTR bowl + chr2L_15_3780001 chr2L_3780001 RAL-340_100b 146 chr2L 3784780 3784805 chr2L 3785664 3785684 6 882 39.0 29.5 34.2 0.2 904 chr2L 3784780 intergenic CG31960 + chr2L 3785232 exon CG31960 + chr2L 3785684 intergenic CG31958 +,CG31960 + chr2L_6_3785001 chr2L_3785001 RAL-340_100b 147 chr2L 3784696 3784719 chr2L 3785613 3785630 5 916 48.0 35.5 41.8 0.1 934 chr2L 3784696 intergenic CG31960 + chr2L 3785163 exon CG31960 + chr2L 3785630 intergenic CG31960 +,CG31958 + chr2L_5_3785001 chr2L_3785001 RAL-340_100b 148 chr2L 3840405 3840412 chr2L 3840592 3840601 5 190 16.0 12.5 14.2 0.3 196 chr2L 3840405 intergenic not near genes chr2L 3840503 intergenic not near genes chr2L 3840601 intergenic not near genes chr2L_5_3840001 chr2L_3840001 RAL-340_100b 149 chr2L 3840414 3840435 chr2L 3840590 3840617 17 184 8.5 11.0 9.8 1.6 203 chr2L 3840414 intergenic not near genes chr2L 3840516 intergenic not near genes chr2L 3840617 intergenic not near genes chr2L_17_3840001 chr2L_3840001 RAL-340_100b 150 chr2L 3862289 3862311 chr2L 3862390 3862395 9 99 0.5 0.0 0.2 7.5 106 chr2L 3862289 intergenic CR44078 -,CG3964 + chr2L 3862342 intergenic CR44078 -,CG3964 + chr2L 3862395 intergenic CG3964 +,CR44078 - chr2L_9_3860001 chr2L_3860001 RAL-340_100b 151 chr2L 3891866 3891886 chr2L 3891976 3891990 17 108 41.5 16.5 29.0 0.6 124 chr2L 3891866 intron capu - chr2L 3891928 intron capu - chr2L 3891990 intron capu - chr2L_17_3890001 chr2L_3890001 RAL-340_100b 152 chr2L 3891888 3891922 chr2L 3891977 3892032 39 104 19.0 16.0 17.5 2.1 144 chr2L 3891888 intron capu - chr2L 3891960 intron capu - chr2L 3892032 intron capu - chr2L_39_3890001 chr2L_3890001 RAL-340_100b 153 chr2L 3936635 3936654 chr2L 3936738 3936755 9 103 4.0 8.0 6.0 1.3 120 chr2L 3936635 intron fred - chr2L 3936695 intron fred - chr2L 3936755 intron fred - chr2L_9_3935001 chr2L_3935001 RAL-340_100b 154 chr2L 3943775 3943805 chr2L 3943891 3943921 4 116 4.5 6.5 5.5 0.6 146 chr2L 3943775 intron fred - chr2L 3943848 intron fred - chr2L 3943921 intron fred - chr2L_4_3940001 chr2L_3940001 RAL-340_100b 155 chr2L 3943806 3943827 chr2L 3943884 3943928 11 109 1.5 5.0 3.2 2.6 122 chr2L 3943806 intron fred - chr2L 3943867 intron fred - chr2L 3943928 intron fred - chr2L_11_3940001 chr2L_3940001 RAL-340_100b 156 chr2L 3959163 3959202 chr2L 3959254 3959293 15 93 7.0 1.5 4.2 2.9 130 chr2L 3959163 intron fred - chr2L 3959228 intron fred - chr2L 3959293 intron fred - chr2L_15_3955001 chr2L_3955001 RAL-340_100b 157 chr2L 3962111 3962121 chr2L 3962216 3962226 5 105 7.5 3.5 5.5 0.8 115 chr2L 3962111 intron fred - chr2L 3962168 intron fred - chr2L 3962226 intron fred - chr2L_5_3960001 chr2L_3960001 RAL-340_100b 158 chr2L 3996311 3996322 chr2L 3996450 3996460 5 139 5.5 7.5 6.5 0.7 149 chr2L 3996311 intergenic not near genes chr2L 3996386 intergenic not near genes chr2L 3996460 intergenic not near genes chr2L_5_3995001 chr2L_3995001 RAL-340_100b 159 chr2L 3996325 3996340 chr2L 3996464 3996468 5 137 3.0 14.5 8.8 0.5 143 chr2L 3996325 intergenic not near genes chr2L 3996396 intergenic not near genes chr2L 3996468 intergenic not near genes chr2L_5_3995001 chr2L_3995001 RAL-340_100b 160 chr2L 4014629 4014680 chr2L 4014797 4014833 14 160 7.5 7.0 7.2 1.7 204 chr2L 4014629 intergenic not near genes chr2L 4014731 intergenic not near genes chr2L 4014833 intergenic not near genes chr2L_14_4010001 chr2L_4010001 RAL-340_100b 161 chr2L 4027682 4027695 chr2L 4027783 4027796 7 100 7.5 24.5 16.0 0.4 114 chr2L 4027682 intergenic not near genes chr2L 4027739 intergenic not near genes chr2L 4027796 intergenic not near genes chr2L_7_4025001 chr2L_4025001 RAL-340_100b 162 chr2L 4117732 4117782 chr2L 4117842 4117882 26 108 4.5 8.5 6.5 3.5 150 chr2L 4117732 intergenic not near genes chr2L 4117807 intergenic not near genes chr2L 4117882 intergenic not near genes chr2L_26_4115001 chr2L_4115001 RAL-340_100b 163 chr2L 4152252 4152260 chr2L 16217660 16217660 5 12065406 18.0 70.5 44.2 0.1 12065408 chr2L 4152252 intergenic not near genes chr2L 10184956 exon Sur - chr2L 16217660 intergenic not near genes chr2L_5_10180001 chr2L_10180001 RAL-340_100b 164 chr2L 4159383 4159441 chr2L 4159608 4159665 26 221 4.0 6.5 5.2 4.2 282 chr2L 4159383 intergenic not near genes chr2L 4159524 intergenic not near genes chr2L 4159665 intergenic not near genes chr2L_26_4155001 chr2L_4155001 RAL-340_100b 165 chr2L 4166356 4166410 chr2L 4166464 4166518 17 105 4.5 5.0 4.8 2.9 162 chr2L 4166356 intergenic Or24a - chr2L 4166437 intergenic Or24a - chr2L 4166518 intergenic Or24a - chr2L_17_4165001 chr2L_4165001 RAL-340_100b 166 chr2L 4180107 4180121 chr2L 4180208 4180222 14 101 11.5 12.0 11.8 1.1 115 chr2L 4180107 intergenic not near genes chr2L 4180164 intergenic not near genes chr2L 4180222 intergenic not near genes chr2L_14_4180001 chr2L_4180001 RAL-340_100b 167 chr2L 4184456 4184499 chr2L 4184791 4184818 7 337 3.5 2.0 2.8 1.8 362 chr2L 4184456 intergenic not near genes chr2L 4184637 intergenic not near genes chr2L 4184818 intergenic not near genes chr2L_7_4180001 chr2L_4180001 RAL-340_100b 168 chr2L 4250428 4250455 chr2L 4250537 4250564 16 107 11.0 3.0 7.0 2.0 136 chr2L 4250428 intergenic not near genes chr2L 4250496 intergenic not near genes chr2L 4250564 intergenic not near genes chr2L_16_4250001 chr2L_4250001 RAL-340_100b 169 chr2L 4256546 4256575 chr2L 4256651 4256680 7 101 2.0 10.5 6.2 1.0 134 chr2L 4256546 intergenic CR45295 -,CR45296 -,CR45294 - chr2L 4256613 intergenic CR45295 -,CR45296 - chr2L 4256680 intergenic CR45296 -,CR45295 - chr2L_7_4255001 chr2L_4255001 RAL-340_100b 170 chr2L 4262045 4262102 chr2L 4262146 4262203 30 95 6.0 10.0 8.0 3.3 158 chr2L 4262045 intergenic not near genes chr2L 4262124 intergenic not near genes chr2L 4262203 intergenic not near genes chr2L_30_4260001 chr2L_4260001 RAL-340_100b 171 chr2L 4359166 4359221 chr2L 4359715 4359770 29 546 4.5 7.0 5.8 4.3 604 chr2L 4359166 intergenic not near genes chr2L 4359468 intergenic not near genes chr2L 4359770 intergenic not near genes chr2L_29_4355001 chr2L_4355001 RAL-340_100b 172 chr2L 4371134 4371187 chr2L 4371247 4371300 9 104 14.0 0.5 7.2 1.1 166 chr2L 4371134 intron Traf4 + chr2L 4371217 intron Traf4 + chr2L 4371300 intron Traf4 + chr2L_9_4370001 chr2L_4370001 RAL-340_100b 173 chr2L 4424491 4424523 chr2L 4424627 4424633 21 134 12.0 12.0 12.0 1.6 142 chr2L 4424491 intron CG15431 - chr2L 4424562 intron CG15431 - chr2L 4424633 intron CG15431 - chr2L_21_4420001 chr2L_4420001 RAL-340_100b 174 chr2L 4424524 4424544 chr2L 4424623 4424663 5 125 7.5 11.0 9.2 0.5 139 chr2L 4424524 intron CG15431 - chr2L 4424594 intron CG15431 - chr2L 4424663 intron CG15431 - chr2L_5_4420001 chr2L_4420001 RAL-340_100b 175 chr2L 4549206 4549219 chr2L 16217660 16217660 4 11668447 142.0 70.5 106.2 0.0 11668454 chr2L 4549206 intron dp - chr2L 10383433 exon CG5096 + chr2L 16217660 intergenic not near genes chr2L_4_10380001 chr2L_10380001 RAL-340_100b 176 chr2L 4601684 4601736 chr2L 4609150 4609202 mdg1 27 7464 7.0 6.0 6.5 3.6 7518 chr2L 4601684 intron dp - chr2L 4605443 intron dp - chr2L 4609202 intron dp - chr2L_27_4605001 chr2L_4605001 RAL-340_100b 177 chr2L 4661457 4661484 chr2L 4661563 4661590 9 102 15.0 13.0 14.0 0.6 133 chr2L 4661457 intergenic not near genes chr2L 4661524 intergenic not near genes chr2L 4661590 intergenic not near genes chr2L_9_4660001 chr2L_4660001 RAL-340_100b 178 chr2L 4661487 4661502 chr2L 4661561 4661608 5 99 7.5 11.5 9.5 0.5 121 chr2L 4661487 intergenic not near genes chr2L 4661548 intergenic not near genes chr2L 4661608 intergenic not near genes chr2L_5_4660001 chr2L_4660001 RAL-340_100b 179 chr2L 4661820 4661854 chr2L 4669425 4669439 opus 8 7600 10.5 11.0 10.8 0.7 7619 chr2L 4661820 intergenic not near genes chr2L 4665630 intergenic not near genes chr2L 4669439 intergenic not near genes chr2L_8_4665001 chr2L_4665001 RAL-340_100b 180 chr2L 4679966 4679991 chr2L 4680080 4680105 8 113 3.5 0.0 1.8 2.9 139 chr2L 4679966 intergenic not near genes chr2L 4680036 intergenic not near genes chr2L 4680105 intergenic not near genes chr2L_8_4680001 chr2L_4680001 RAL-340_100b 181 chr2L 4680877 4681147 chr2L 4681006 4681248 15 129 4.5 6.0 5.2 2.4 371 chr2L 4680877 intergenic not near genes chr2L 4681062 intergenic not near genes chr2L 4681248 intergenic not near genes chr2L_15_4680001 chr2L_4680001 RAL-340_100b 182 chr2L 4740068 4740117 chr2L 4740173 4740222 19 100 2.5 5.0 3.8 4.0 154 chr2L 4740068 intron CG15630 - chr2L 4740145 intron CG15630 - chr2L 4740222 intron CG15630 - chr2L_19_4740001 chr2L_4740001 RAL-340_100b 183 chr2L 4774169 4774186 chr2L 4774540 4774563 10 382 9.5 14.5 12.0 0.8 394 chr2L 4774169 intron CG15630 - chr2L 4774366 intron CG15630 - chr2L 4774563 intron CG15630 - chr2L_10_4770001 chr2L_4770001 RAL-340_100b 184 chr2L 4774187 4774193 chr2L 4774575 4774581 4 388 8.0 24.5 16.2 0.2 394 chr2L 4774187 intron CG15630 - chr2L 4774384 intron CG15630 - chr2L 4774581 intron CG15630 - chr2L_4_4770001 chr2L_4770001 RAL-340_100b 185 chr2L 4774201 4774205 chr2L 4774549 4774593 5 373 5.0 18.5 11.8 0.4 392 chr2L 4774201 intron CG15630 - chr2L 4774397 intron CG15630 - chr2L 4774593 intron CG15630 - chr2L_5_4770001 chr2L_4770001 RAL-340_100b 186 chr2L 4792834 4792852 chr2L 4792933 4792966 20 111 11.5 8.5 10.0 1.8 132 chr2L 4792834 intron CG15630 - chr2L 4792900 intron CG15630 - chr2L 4792966 intron CG15630 - chr2L_20_4790001 chr2L_4790001 RAL-340_100b 187 chr2L 4792854 4792864 chr2L 4792932 4792978 6 107 6.0 8.5 7.2 0.7 124 chr2L 4792854 intron CG15630 - chr2L 4792916 intron CG15630 - chr2L 4792978 intron CG15630 - chr2L_6_4790001 chr2L_4790001 RAL-340_100b 188 chr2L 4793293 4793316 chr2L 4793603 4793636 8 316 15.0 6.5 10.8 0.7 343 chr2L 4793293 intron CG15630 - chr2L 4793464 intron CG15630 - chr2L 4793636 intron CG15630 - chr2L_8_4790001 chr2L_4790001 RAL-340_100b 189 chr2L 4819469 4819519 chr2L 4819617 4819637 13 141 3.0 10.0 6.5 1.7 168 chr2L 4819469 intergenic not near genes chr2L 4819553 intergenic not near genes chr2L 4819637 intergenic not near genes chr2L_13_4815001 chr2L_4815001 RAL-340_100b 190 chr2L 4918144 4918195 chr2L 4923242 4923331 jockey 4 5117 4.0 0.5 2.2 1.2 5187 chr2L 4918144 intron hoe1 - chr2L 4920738 intron hoe1 - chr2L 4923331 intron hoe1 - chr2L_4_4920001 chr2L_4920001 RAL-340_100b 191 chr2L 4923239 4923249 chr2L 4923345 4923365 5 111 0.0 8.0 4.0 1.0 126 chr2L 4923239 intron hoe1 - chr2L 4923302 intron hoe1 - chr2L 4923365 intron hoe1 - chr2L_5_4920001 chr2L_4920001 RAL-340_100b 192 chr2L 4925651 4925690 chr2L 4925755 4925794 5 104 4.0 2.0 3.0 1.2 143 chr2L 4925651 intron hoe1 - chr2L 4925722 intron hoe1 - chr2L 4925794 intron hoe1 - chr2L_5_4925001 chr2L_4925001 RAL-340_100b 193 chr2L 4953504 4953510 chr2L 4953770 4953776 pogo 5 266 15.5 0.0 7.8 0.6 272 chr2L 4953504 intergenic Jon25Bii - chr2L 4953640 intergenic not near genes chr2L 4953776 intergenic not near genes chr2L_5_4950001 chr2L_4950001 RAL-340_100b 194 chr2L 5021708 5021713 chr2L 5021804 5021813 4 98 39.0 25.5 32.2 0.1 105 chr2L 5021708 intron vkg - chr2L 5021760 intron vkg - chr2L 5021813 intron vkg - chr2L_4_5020001 chr2L_5020001 RAL-340_100b 195 chr2L 5070718 5070770 chr2L 5070821 5070872 11 101 4.0 5.0 4.5 2.0 154 chr2L 5070718 3` UTR qtc + chr2L 5070795 intergenic qtc +,CR45305 -,RpL37A + chr2L 5070872 intergenic CR45305 -,RpL37A +,qtc + chr2L_11_5070001 chr2L_5070001 RAL-340_100b 196 chr2L 5085024 5085033 chr2L 5085141 5085141 5 114 10.5 8.0 9.2 0.5 117 chr2L 5085024 intron pgant5 - chr2L 5085082 intron pgant5 - chr2L 5085141 intron pgant5 - chr2L_5_5085001 chr2L_5085001 RAL-340_100b 197 chr2L 5092401 5092443 chr2L 5092498 5092554 12 104 6.0 4.5 5.2 1.9 153 chr2L 5092401 intron pgant5 - chr2L 5092478 intron pgant5 - chr2L 5092554 intron pgant5 - chr2L_12_5090001 chr2L_5090001 RAL-340_100b 198 chr2L 5120948 5121006 chr2L 5121067 5121125 26 113 21.0 4.5 12.8 1.9 177 chr2L 5120948 intron Msp300 + chr2L 5121036 intron Msp300 + chr2L 5121125 intron Msp300 + chr2L_26_5120001 chr2L_5120001 RAL-340_100b 199 chr2L 5165958 5166004 chr2L 5170071 5170072 5 4102 8.5 58.5 33.5 0.1 4114 chr2L 5165958 intron Msp300 + chr2L 5168015 intron Msp300 + chr2L 5170072 intron Msp300 + chr2L_5_5165001 chr2L_5165001 RAL-340_100b 200 chr2L 5200540 5200560 chr2L 5215763 5215815 7 15246 57.5 39.5 48.5 0.1 15275 chr2L 5200540 exon Msp300 + chr2L 5208178 exon Cyp28d2 + chr2L 5215815 exon CG14034 - chr2L_7_5205001 chr2L_5205001 RAL-340_100b 201 chr2L 5242891 5242937 chr2L 16217660 16217661 64 10974725 66.0 70.5 68.2 0.9 10974770 chr2L 5242891 intron tkv - chr2L 10730276 3` UTR,5` UTR CG6443 +,CG17118 + chr2L 16217661 intergenic not near genes chr2L_64_10730001 chr2L_10730001 RAL-340_100b 202 chr2L 5262507 5262539 chr2L 5262609 5262640 8 98 11.0 10.0 10.5 0.7 133 chr2L 5262507 intron tkv - chr2L 5262574 intron tkv - chr2L 5262640 intron tkv - chr2L_8_5260001 chr2L_5260001 RAL-340_100b 203 chr2L 5342503 5342509 chr2L 5342606 5342612 4 103 0.5 13.0 6.8 0.5 109 chr2L 5342503 intergenic CG12512 - chr2L 5342558 intergenic CG12512 - chr2L 5342612 intergenic CG12512 - chr2L_4_5340001 chr2L_5340001 RAL-340_100b 204 chr2L 5342510 5342530 chr2L 5342585 5342633 22 99 1.0 10.5 5.8 3.2 123 chr2L 5342510 intergenic CG12512 - chr2L 5342572 intergenic CG12512 - chr2L 5342633 intergenic CG12512 - chr2L_22_5340001 chr2L_5340001 RAL-340_100b 205 chr2L 5342789 5342794 chr2L 5345159 5345164 Doc 5 2370 6.0 2.5 4.2 1.0 2375 chr2L 5342789 intergenic not near genes chr2L 5343976 intergenic not near genes chr2L 5345164 intergenic not near genes chr2L_5_5340001 chr2L_5340001 RAL-340_100b 206 chr2L 5433820 5433879 chr2L 5433925 5433972 14 100 5.5 4.0 4.8 2.4 152 chr2L 5433820 3` UTR CR43715 - chr2L 5433896 3` UTR CR43715 - chr2L 5433972 3` UTR CR43715 - chr2L_14_5430001 chr2L_5430001 RAL-340_100b 207 chr2L 5436514 5436541 chr2L 5436616 5436643 4 102 11.5 9.5 10.5 0.3 129 chr2L 5436514 3` UTR CR31647 - chr2L 5436578 3` UTR CR31647 - chr2L 5436643 3` UTR CR31647 - chr2L_4_5435001 chr2L_5435001 RAL-340_100b 208 chr2L 5449684 5449735 chr2L 5449804 5449817 8 117 0.5 0.0 0.2 6.7 133 chr2L 5449684 intergenic not near genes chr2L 5449750 intergenic not near genes chr2L 5449817 intergenic not near genes chr2L_8_5445001 chr2L_5445001 RAL-340_100b 209 chr2L 5508524 5508558 chr2L 5508606 5508649 12 96 3.0 3.0 3.0 3.0 125 chr2L 5508524 intergenic not near genes chr2L 5508586 intergenic not near genes chr2L 5508649 intergenic not near genes chr2L_12_5505001 chr2L_5505001 RAL-340_100b 210 chr2L 5647517 5647547 chr2L 5647648 5647648 10 125 5.5 6.5 6.0 1.4 131 chr2L 5647517 intron CG31646 - chr2L 5647582 intron CG31646 - chr2L 5647648 intron CG31646 - chr2L_10_5645001 chr2L_5645001 RAL-340_100b 211 chr2L 5695836 5695889 chr2L 5695952 5695976 12 110 6.0 1.0 3.5 2.7 140 chr2L 5695836 intergenic not near genes chr2L 5695906 intergenic not near genes chr2L 5695976 intergenic not near genes chr2L_12_5695001 chr2L_5695001 RAL-340_100b 212 chr2L 5713977 5713978 chr2L 8904515 8904516 5 3190538 31.0 5.0 18.0 0.3 3190539 chr2L 5713977 intergenic CG7236 + chr2L 7309246 intron wg + chr2L 8904516 intron CG34398 + chr2L_5_7305001 chr2L_7305001 RAL-340_100b 213 chr2L 5774441 5774479 chr2L 5774545 5774572 7 99 7.0 6.5 6.8 0.9 131 chr2L 5774441 intron CG9171 - chr2L 5774506 intron CG9171 - chr2L 5774572 intron CG9171 - chr2L_7_5770001 chr2L_5770001 RAL-340_100b 214 chr2L 5774481 5774492 chr2L 5774544 5774596 6 85 6.0 6.0 6.0 0.9 115 chr2L 5774481 intron CG9171 - chr2L 5774538 intron CG9171 - chr2L 5774596 intron CG9171 - chr2L_6_5770001 chr2L_5770001 RAL-340_100b 215 chr2L 5805939 5805993 chr2L 5806349 5806403 28 406 6.0 4.5 5.2 4.5 464 chr2L 5805939 intron CG11034 + chr2L 5806171 intron CG11034 + chr2L 5806403 intron CG11034 + chr2L_28_5805001 chr2L_5805001 RAL-340_100b 216 chr2L 5827692 5827710 chr2L 5836725 5836743 roo 4 9033 9.5 12.0 10.8 0.3 9051 chr2L 5827692 intron TrissinR + chr2L 5832218 intron TrissinR + chr2L 5836743 intron TrissinR + chr2L_4_5830001 chr2L_5830001 RAL-340_100b 217 chr2L 5827711 5827738 chr2L 5836724 5836769 roo 13 9028 5.0 12.0 8.5 1.4 9058 chr2L 5827711 intron TrissinR + chr2L 5832240 intron TrissinR + chr2L 5836769 intron TrissinR + chr2L_13_5830001 chr2L_5830001 RAL-340_100b 218 chr2L 5837358 5837383 chr2L 5837779 5837817 8 434 8.0 4.0 6.0 1.1 459 chr2L 5837358 intron TrissinR + chr2L 5837588 intron TrissinR + chr2L 5837817 intron TrissinR + chr2L_8_5835001 chr2L_5835001 RAL-340_100b 219 chr2L 4633828 4633830 chr2L 5904538 5904540 7 1270711 26.0 5.5 15.8 0.4 1270712 chr2L 4633828 intergenic CR45452 - chr2L 5269184 intron,intron tkv -,Cyp4ac3 + chr2L 5904540 intron CG9021 - chr2L_7_5265001 chr2L_5265001 RAL-340_100b 220 chr2L 5957250 5957253 chr2L 5957286 5957302 6 42 34.5 34.0 34.2 0.2 52 chr2L 5957250 exon Vm26Ab + chr2L 5957276 exon Vm26Ab + chr2L 5957302 exon Vm26Ab + chr2L_6_5955001 chr2L_5955001 RAL-340_100b 221 chr2L 6007097 6007105 chr2L 6007189 6007195 5 97 12.5 4.0 8.2 0.5 98 chr2L 6007097 intergenic CG9098 -,Gal - chr2L 6007146 intergenic CG9098 -,Gal - chr2L 6007195 intergenic CG9098 -,Gal - chr2L_5_6005001 chr2L_6005001 RAL-340_100b 222 chr2L 6070899 6070908 chr2L 6071000 6071022 6 111 0.5 10.0 5.2 1.0 123 chr2L 6070899 intergenic Kr-h2 +,CG9154 - chr2L 6070960 intergenic Kr-h2 +,CG9154 - chr2L 6071022 5` UTR Kr-h2 + chr2L_6_6070001 chr2L_6070001 RAL-340_100b 223 chr2L 6070915 6070924 chr2L 6070989 6071033 10 99 0.0 8.5 4.2 1.9 118 chr2L 6070915 intergenic Kr-h2 +,CG9154 - chr2L 6070974 intergenic Kr-h2 +,CG9154 - chr2L 6071033 5` UTR Kr-h2 + chr2L_10_6070001 chr2L_6070001 RAL-340_100b 224 chr2L 6075515 6075537 chr2L 6075615 6075639 4 102 27.5 20.0 23.8 0.2 124 chr2L 6075515 intergenic not near genes chr2L 6075577 intergenic not near genes chr2L 6075639 intergenic not near genes chr2L_4_6075001 chr2L_6075001 RAL-340_100b 225 chr2L 6130744 6130786 chr2L 6130854 6130895 6 105 4.5 1.5 3.0 1.5 151 chr2L 6130744 intergenic CG42730 -,tectonic -,CG9222 + chr2L 6130820 intergenic CG42730 -,tectonic -,CG9222 + chr2L 6130895 intergenic CG9222 +,CG42730 -,tectonic - chr2L_6_6130001 chr2L_6130001 RAL-340_100b 226 chr2L 6136535 6136582 chr2L 6136657 6136704 6 122 3.0 9.0 6.0 0.9 169 chr2L 6136535 intergenic not near genes chr2L 6136620 intergenic not near genes chr2L 6136704 intergenic not near genes chr2L_6_6135001 chr2L_6135001 RAL-340_100b 227 chr2L 6199980 6200027 chr2L 6200156 6200181 16 171 8.5 2.5 5.5 2.5 201 chr2L 6199980 intron CG34380 + chr2L 6200080 intron CG34380 + chr2L 6200181 intron CG34380 + chr2L_16_6200001 chr2L_6200001 RAL-340_100b 228 chr2L 6213484 6213502 chr2L 6213728 6213753 10 265 9.0 4.5 6.8 1.3 269 chr2L 6213484 intergenic not near genes chr2L 6213618 intergenic not near genes chr2L 6213753 intergenic not near genes chr2L_10_6210001 chr2L_6210001 RAL-340_100b 229 chr2L 6255294 6255347 chr2L 6255396 6255419 29 94 8.0 7.0 7.5 3.4 125 chr2L 6255294 intron Ddr + chr2L 6255356 intron Ddr + chr2L 6255419 intron Ddr + chr2L_29_6255001 chr2L_6255001 RAL-340_100b 230 chr2L 6283928 6283938 chr2L 6284053 6284072 5 133 10.5 0.0 5.2 0.8 144 chr2L 6283928 intron Ddr + chr2L 6284000 intron Ddr + chr2L 6284072 intron Ddr + chr2L_5_6280001 chr2L_6280001 RAL-340_100b 231 chr2L 6300533 6300579 chr2L 6300644 6300690 12 105 7.0 9.0 8.0 1.3 157 chr2L 6300533 intron Ddr + chr2L 6300612 intron Ddr + chr2L 6300690 intron Ddr + chr2L_12_6300001 chr2L_6300001 RAL-340_100b 232 chr2L 6363128 6363154 chr2L 6366073 6366100 Burdock 20 2942 14.5 7.5 11.0 1.7 2972 chr2L 6363128 intergenic not near genes chr2L 6364614 intergenic not near genes chr2L 6366100 intergenic not near genes chr2L_20_6360001 chr2L_6360001 RAL-340_100b 233 chr2L 6363159 6363181 chr2L 6366070 6366128 Burdock 14 2939 9.5 7.0 8.2 1.5 2969 chr2L 6363159 intergenic not near genes chr2L 6364644 intergenic not near genes chr2L 6366128 intergenic not near genes chr2L_14_6360001 chr2L_6360001 RAL-340_100b 234 chr2L 6426836 6426885 chr2L 6445121 6445169 roo 29 18281 8.5 12.0 10.2 2.6 18333 chr2L 6426836 3` UTR CG9527 - chr2L 6436002 intron CG9527 - chr2L 6445169 exon CG9527 - chr2L_29_6435001 chr2L_6435001 RAL-340_100b 235 chr2L 6463542 6463551 chr2L 6463648 6463663 7 106 19.0 6.5 12.8 0.5 121 chr2L 6463542 exon CG16947 - chr2L 6463602 exon CG16947 - chr2L 6463663 exon CG16947 - chr2L_7_6460001 chr2L_6460001 RAL-340_100b 236 chr2L 6463552 6463584 chr2L 6463645 6463670 15 93 9.5 6.0 7.8 1.7 118 chr2L 6463552 exon CG16947 - chr2L 6463611 exon CG16947 - chr2L 6463670 exon CG16947 - chr2L_15_6460001 chr2L_6460001 RAL-340_100b 237 chr2L 6484075 6484099 chr2L 6484204 6484213 8 122 21.0 19.0 20.0 0.4 138 chr2L 6484075 exon DLP + chr2L 6484144 exon DLP + chr2L 6484213 exon DLP + chr2L_8_6480001 chr2L_6480001 RAL-340_100b 238 chr2L 6484106 6484123 chr2L 6484200 6484252 14 117 12.0 17.0 14.5 0.9 146 chr2L 6484106 exon DLP + chr2L 6484179 exon DLP + chr2L 6484252 exon DLP + chr2L_14_6480001 chr2L_6480001 RAL-340_100b 239 chr2L 6499946 6499960 chr2L 6500069 6500083 9 122 18.5 8.5 13.5 0.6 137 chr2L 6499946 intron CG31637 + chr2L 6500014 intron CG31637 + chr2L 6500083 intron CG31637 + chr2L_9_6500001 chr2L_6500001 RAL-340_100b 240 chr2L 6499961 6499997 chr2L 6500067 6500120 16 120 8.0 8.0 8.0 1.8 159 chr2L 6499961 intron CG31637 + chr2L 6500040 intron CG31637 + chr2L 6500120 intron CG31637 + chr2L_16_6500001 chr2L_6500001 RAL-340_100b 241 chr2L 6527229 6527238 chr2L 6527333 6527342 4 104 4.5 8.0 6.2 0.6 113 chr2L 6527229 intergenic eya -,CG31637 + chr2L 6527286 intergenic eya -,CG31637 + chr2L 6527342 intergenic eya -,CG31637 + chr2L_4_6525001 chr2L_6525001 RAL-340_100b 242 chr2L 6544351 6544391 chr2L 6544468 6544497 13 116 6.5 8.5 7.5 1.5 146 chr2L 6544351 intron eya - chr2L 6544424 intron eya - chr2L 6544497 intron eya - chr2L_13_6540001 chr2L_6540001 RAL-340_100b 243 chr2L 6626864 6626915 chr2L 6626974 6627019 17 104 8.0 9.5 8.8 1.7 155 chr2L 6626864 intron Oatp26F - chr2L 6626942 intron Oatp26F - chr2L 6627019 intron Oatp26F - chr2L_17_6625001 chr2L_6625001 RAL-340_100b 244 chr2L 6771963 6771979 chr2L 6772074 6772086 8 107 34.5 15.0 24.8 0.3 123 chr2L 6771963 intron CG11321 - chr2L 6772024 intron CG11321 - chr2L 6772086 intron CG11321 - chr2L_8_6770001 chr2L_6770001 RAL-340_100b 245 chr2L 6771980 6772008 chr2L 6772071 6772120 9 104 22.0 15.0 18.5 0.5 140 chr2L 6771980 intron CG11321 - chr2L 6772050 intron CG11321 - chr2L 6772120 intron CG11321 - chr2L_9_6770001 chr2L_6770001 RAL-340_100b 246 chr2L 6772017 6772022 chr2L 6772081 6772082 5 68 11.0 17.5 14.2 0.3 65 chr2L 6772017 intron CG11321 - chr2L 6772050 intron CG11321 - chr2L 6772082 intron CG11321 - chr2L_5_6770001 chr2L_6770001 RAL-340_100b 247 chr2L 6772573 6772597 chr2L 6772666 6772705 20 99 23.5 31.0 27.2 0.7 132 chr2L 6772573 5` UTR CG11321 - chr2L 6772639 5` UTR CG11321 - chr2L 6772705 5` UTR CG11321 - chr2L_20_6770001 chr2L_6770001 RAL-340_100b 248 chr2L 6799513 6799570 chr2L 6799623 6799683 29 101 2.5 5.0 3.8 6.0 170 chr2L 6799513 5` UTR CR43610 + chr2L 6799598 5` UTR CR43610 + chr2L 6799683 intergenic CR43610 +,CG17376 - chr2L_29_6795001 chr2L_6795001 RAL-340_100b 249 chr2L 6876771 6876788 chr2L 6882967 6882985 diver 12 6194 15.0 6.5 10.8 1.0 6214 chr2L 6876771 intron Nlg2 + chr2L 6879878 intron Nlg2 + chr2L 6882985 intron Nlg2 + chr2L_12_6875001 chr2L_6875001 RAL-340_100b 250 chr2L 6887477 6887501 chr2L 6887652 6887654 4 170 4.5 0.0 2.2 1.2 177 chr2L 6887477 intron Nlg2 + chr2L 6887566 intron Nlg2 + chr2L 6887654 intron Nlg2 + chr2L_4_6885001 chr2L_6885001 RAL-340_100b 251 chr2L 6933924 6933931 chr2L 6934020 6934035 4 102 9.5 5.0 7.2 0.5 111 chr2L 6933924 exon CG18304 - chr2L 6933980 intron CG18304 - chr2L 6934035 intron CG18304 - chr2L_4_6930001 chr2L_6930001 RAL-340_100b 252 chr2L 6991407 6991435 chr2L 6998551 6998579 HMS-Beagle 9 7144 10.5 5.5 8.0 1.0 7172 chr2L 6991407 intron uif - chr2L 6994993 intron uif - chr2L 6998579 intron uif - chr2L_9_6990001 chr2L_6990001 RAL-340_100b 253 chr2L 7041256 7041270 chr2L 7041368 7041384 4 114 1.0 9.0 5.0 0.7 128 chr2L 7041256 intron milt + chr2L 7041320 intron milt + chr2L 7041384 intron milt + chr2L_4_7040001 chr2L_7040001 RAL-340_100b 254 chr2L 7043519 7043568 chr2L 7043676 7043720 6 156 0.0 3.5 1.8 2.1 201 chr2L 7043519 intron milt + chr2L 7043620 intron milt + chr2L 7043720 intron milt + chr2L_6_7040001 chr2L_7040001 RAL-340_100b 255 chr2L 7088844 7088898 chr2L 7089070 7089124 7 226 0.0 0.0 0.0 7.0 280 chr2L 7088844 intergenic not near genes chr2L 7088984 intergenic not near genes chr2L 7089124 intergenic not near genes chr2L_7_7085001 chr2L_7085001 RAL-340_100b 256 chr2L 7113618 7113647 chr2L 7113863 7113890 7 246 11.5 6.5 9.0 0.7 272 chr2L 7113618 intron Pvf3 - chr2L 7113754 intron Pvf3 - chr2L 7113890 intron Pvf3 - chr2L_7_7110001 chr2L_7110001 RAL-340_100b 257 chr2L 7113649 7113665 chr2L 7113861 7113879 7 216 7.0 6.0 6.5 0.9 230 chr2L 7113649 intron Pvf3 - chr2L 7113764 intron Pvf3 - chr2L 7113879 intron Pvf3 - chr2L_7_7110001 chr2L_7110001 RAL-340_100b 258 chr2L 7126834 7126866 chr2L 7126938 7126970 6 104 3.0 5.0 4.0 1.2 136 chr2L 7126834 intron Pvf3 - chr2L 7126902 intron Pvf3 - chr2L 7126970 intron Pvf3 - chr2L_6_7125001 chr2L_7125001 RAL-340_100b 259 chr2L 7243827 7243872 chr2L 7243958 7243989 22 121 10.0 4.0 7.0 2.8 162 chr2L 7243827 intron Ndae1 - chr2L 7243908 intron Ndae1 - chr2L 7243989 intron Ndae1 - chr2L_22_7240001 chr2L_7240001 RAL-340_100b 260 chr2L 7254519 7254547 chr2L 7254622 7254650 4 103 0.5 6.0 3.2 1.0 131 chr2L 7254519 intergenic not near genes chr2L 7254584 intergenic not near genes chr2L 7254650 intergenic not near genes chr2L_4_7250001 chr2L_7250001 RAL-340_100b 261 chr2L 7325896 7325928 chr2L 7325999 7326038 9 107 10.0 5.5 7.8 1.0 142 chr2L 7325896 intergenic not near genes chr2L 7325967 intergenic not near genes chr2L 7326038 intergenic not near genes chr2L_9_7325001 chr2L_7325001 RAL-340_100b 262 chr2L 7326461 7326502 chr2L 7326604 7326645 5 143 11.5 5.0 8.2 0.5 184 chr2L 7326461 intergenic not near genes chr2L 7326553 intergenic not near genes chr2L 7326645 intergenic not near genes chr2L_5_7325001 chr2L_7325001 RAL-340_100b 263 chr2L 7330246 7330290 chr2L 7330350 7330394 11 103 4.0 7.0 5.5 1.7 148 chr2L 7330246 intergenic not near genes chr2L 7330320 intergenic not near genes chr2L 7330394 intergenic not near genes chr2L_11_7330001 chr2L_7330001 RAL-340_100b 264 chr2L 7335178 7335233 chr2L 7335300 7335345 19 118 8.0 1.5 4.8 3.3 167 chr2L 7335178 intron Wnt6 + chr2L 7335262 intron Wnt6 + chr2L 7335345 intron Wnt6 + chr2L_19_7335001 chr2L_7335001 RAL-340_100b 265 chr2L 7336978 7337026 chr2L 7337080 7337128 22 101 4.0 5.0 4.5 4.0 150 chr2L 7336978 intron Wnt6 + chr2L 7337053 intron Wnt6 + chr2L 7337128 intron Wnt6 + chr2L_22_7335001 chr2L_7335001 RAL-340_100b 266 chr2L 7343306 7343338 chr2L 7350447 7350478 roo 13 7137 17.0 20.0 18.5 0.7 7172 chr2L 7343306 intron Wnt6 + chr2L 7346892 intron Wnt6 + chr2L 7350478 intron Wnt6 + chr2L_13_7345001 chr2L_7345001 RAL-340_100b 267 chr2L 7343343 7343350 chr2L 7350439 7350489 roo 8 7130 12.5 16.0 14.2 0.5 7146 chr2L 7343343 intron Wnt6 + chr2L 7346916 intron Wnt6 + chr2L 7350489 intron Wnt6 + chr2L_8_7345001 chr2L_7345001 RAL-340_100b 268 chr2L 7357494 7357554 chr2L 7357597 7357656 6 102 0.0 7.5 3.8 1.2 162 chr2L 7357494 intergenic not near genes chr2L 7357575 intergenic not near genes chr2L 7357656 intergenic not near genes chr2L_6_7355001 chr2L_7355001 RAL-340_100b 269 chr2L 7370773 7370817 chr2L 7370903 7370947 11 130 7.5 1.0 4.2 2.1 174 chr2L 7370773 intron Wnt10 + chr2L 7370860 intron Wnt10 + chr2L 7370947 intron Wnt10 + chr2L_11_7370001 chr2L_7370001 RAL-340_100b 270 chr2L 7377866 7377902 chr2L 7377988 7378024 10 122 1.0 7.0 4.0 2.0 158 chr2L 7377866 intron ninaC + chr2L 7377945 intron ninaC + chr2L 7378024 intron ninaC + chr2L_10_7375001 chr2L_7375001 RAL-340_100b 271 chr2L 7399285 7399287 chr2L 7399682 7399685 4 398 4.0 6.5 5.2 0.6 400 chr2L 7399285 intergenic not near genes chr2L 7399485 intergenic not near genes chr2L 7399685 intergenic not near genes chr2L_4_7395001 chr2L_7395001 RAL-340_100b 272 chr2L 7399295 7399301 chr2L 7399686 7399699 4 396 4.0 7.5 5.8 0.6 404 chr2L 7399295 intergenic not near genes chr2L 7399497 intergenic not near genes chr2L 7399699 intergenic not near genes chr2L_4_7395001 chr2L_7395001 RAL-340_100b 273 chr2L 7399308 7399314 chr2L 7399685 7399712 6 394 4.0 7.0 5.5 0.9 404 chr2L 7399308 intergenic not near genes chr2L 7399510 intergenic not near genes chr2L 7399712 intergenic not near genes chr2L_6_7395001 chr2L_7395001 RAL-340_100b 274 chr2L 7399315 7399328 chr2L 7399680 7399726 6 387 3.0 6.0 4.5 1.1 411 chr2L 7399315 intergenic not near genes chr2L 7399520 intergenic not near genes chr2L 7399726 intergenic not near genes chr2L_6_7395001 chr2L_7395001 RAL-340_100b 275 chr2L 7447769 7447802 chr2L 7447889 7447922 7 117 10.5 5.5 8.0 0.8 153 chr2L 7447769 5` UTR santa-maria - chr2L 7447846 5` UTR santa-maria - chr2L 7447922 5` UTR santa-maria - chr2L_7_7445001 chr2L_7445001 RAL-340_100b 276 chr2L 7447808 7447822 chr2L 7447886 7447942 4 110 6.5 4.0 5.2 0.6 134 chr2L 7447808 5` UTR santa-maria - chr2L 7447875 5` UTR santa-maria - chr2L 7447942 5` UTR santa-maria - chr2L_4_7445001 chr2L_7445001 RAL-340_100b 277 chr2L 7609663 7609718 chr2L 7609764 7609819 19 100 3.5 1.0 2.2 5.9 156 chr2L 7609663 intron CG6739 + chr2L 7609741 intron CG6739 + chr2L 7609819 intron CG6739 + chr2L_19_7605001 chr2L_7605001 RAL-340_100b 278 chr2L 7640403 7640422 chr2L 7640517 7640525 18 111 6.5 11.5 9.0 1.8 122 chr2L 7640403 intergenic not near genes chr2L 7640464 intergenic not near genes chr2L 7640525 intergenic not near genes chr2L_18_7640001 chr2L_7640001 RAL-340_100b 279 chr2L 7657749 7657771 chr2L 7657851 7657874 8 102 4.5 6.0 5.2 1.3 125 chr2L 7657749 intron Slob - chr2L 7657812 intron Slob - chr2L 7657874 intron Slob - chr2L_8_7655001 chr2L_7655001 RAL-340_100b 280 chr2L 7657774 7657786 chr2L 7657849 7657889 5 93 3.5 5.5 4.5 0.9 115 chr2L 7657774 intron Slob - chr2L 7657832 intron Slob - chr2L 7657889 intron Slob - chr2L_5_7655001 chr2L_7655001 RAL-340_100b 281 chr2L 7766604 7766658 chr2L 7766705 7766717 15 95 8.5 6.0 7.2 1.8 113 chr2L 7766604 intergenic not near genes chr2L 7766660 intergenic not near genes chr2L 7766717 intergenic not near genes chr2L_15_7765001 chr2L_7765001 RAL-340_100b 282 chr2L 7861286 7861340 chr2L 7861413 7861469 21 127 6.5 7.0 6.8 2.7 183 chr2L 7861286 intergenic TwdlE - chr2L 7861378 intergenic not near genes chr2L 7861469 intergenic not near genes chr2L_21_7860001 chr2L_7860001 RAL-340_100b 283 chr2L 7867545 7867584 chr2L 7867664 7867670 17 112 18.5 7.5 13.0 1.2 125 chr2L 7867545 intron Proc - chr2L 7867608 intron Proc - chr2L 7867670 intron Proc - chr2L_17_7865001 chr2L_7865001 RAL-340_100b 284 chr2L 7867585 7867599 chr2L 7867659 7867718 15 112 13.0 5.5 9.2 1.5 133 chr2L 7867585 intron Proc - chr2L 7867652 intron Proc - chr2L 7867718 intron Proc - chr2L_15_7865001 chr2L_7865001 RAL-340_100b 285 chr2L 7959022 7959041 chr2L 7960458 7960477 pogo 6 1436 10.5 9.5 10.0 0.5 1455 chr2L 7959022 intron Snoo - chr2L 7959750 intron Snoo - chr2L 7960477 intron Snoo - chr2L_6_7955001 chr2L_7955001 RAL-340_100b 286 chr2L 7959046 7959071 chr2L 7960451 7960506 pogo 11 1430 2.0 5.5 3.8 2.3 1460 chr2L 7959046 intron Snoo - chr2L 7959776 intron Snoo - chr2L 7960506 intron Snoo - chr2L_11_7955001 chr2L_7955001 RAL-340_100b 287 chr2L 7977064 7977110 chr2L 7984065 7984109 297 33 6999 15.5 10.0 12.8 2.4 7045 chr2L 7977064 intron Snoo - chr2L 7980586 intron Snoo - chr2L 7984109 intron,5` UTR Snoo -,CG7231 + chr2L_33_7980001 chr2L_7980001 RAL-340_100b 288 chr2L 8013595 8013609 chr2L 8018824 8018838 copia 7 5228 22.5 2.0 12.2 0.5 5243 chr2L 8013595 intron Tg + chr2L 8016216 intron Tg + chr2L 8018838 intron Tg + chr2L_7_8015001 chr2L_8015001 RAL-340_100b 289 chr2L 8018818 8018833 chr2L 8023623 8023642 Doc 10 4808 0.5 14.5 7.5 1.2 4824 chr2L 8018818 intron Tg + chr2L 8021230 intron Tg + chr2L 8023642 intron Tg + chr2L_10_8020001 chr2L_8020001 RAL-340_100b 290 chr2L 8044070 8044131 chr2L 8044174 8044235 56 98 12.5 12.5 12.5 4.1 165 chr2L 8044070 exon CG7466 + chr2L 8044152 intron CG7466 + chr2L 8044235 intron CG7466 + chr2L_56_8040001 chr2L_8040001 RAL-340_100b 291 chr2L 8108889 8108944 chr2L 8109010 8109013 33 116 10.5 15.0 12.8 2.4 124 chr2L 8108889 3` UTR Bsg + chr2L 8108951 3` UTR Bsg + chr2L 8109013 3` UTR Bsg + chr2L_33_8105001 chr2L_8105001 RAL-340_100b 292 chr2L 8244713 8244753 chr2L 8244854 8244900 22 144 5.5 6.0 5.8 3.2 187 chr2L 8244713 intron CG8086 - chr2L 8244806 intron CG8086 - chr2L 8244900 intron CG8086 - chr2L_22_8240001 chr2L_8240001 RAL-340_100b 293 chr2L 8268430 8268476 chr2L 8268538 8268584 24 105 5.0 4.5 4.8 4.1 154 chr2L 8268430 intron Btk29A - chr2L 8268507 intron Btk29A - chr2L 8268584 intron Btk29A - chr2L_24_8265001 chr2L_8265001 RAL-340_100b 294 chr2L 8285007 8285013 chr2L 8285107 8285114 4 101 24.5 9.0 16.8 0.2 107 chr2L 8285007 intron Btk29A - chr2L 8285060 intron Btk29A - chr2L 8285114 intron Btk29A - chr2L_4_8285001 chr2L_8285001 RAL-340_100b 295 chr2L 8285015 8285031 chr2L 8285106 8285132 12 96 21.0 9.0 15.0 0.8 117 chr2L 8285015 intron Btk29A - chr2L 8285074 intron Btk29A - chr2L 8285132 intron Btk29A - chr2L_12_8285001 chr2L_8285001 RAL-340_100b 296 chr2L 8333383 8333408 chr2L 21936945 21936945 4 13603554 11.5 41.5 26.5 0.1 13603562 chr2L 8333383 intergenic CG14275 + chr2L 15135164 intergenic not near genes chr2L 21936945 intergenic not near genes chr2L_4_15135001 chr2L_15135001 RAL-340_100b 297 chr2L 8452400 8452439 chr2L 8461596 8461635 roo 11 9193 16.5 15.0 15.8 0.7 9235 chr2L 8452400 intron fu12 - chr2L 8457018 intron fu12 - chr2L 8461635 intron fu12 - chr2L_11_8455001 chr2L_8455001 RAL-340_100b 298 chr2L 8554345 8554374 chr2L 8554466 8554495 16 120 7.0 14.0 10.5 1.4 150 chr2L 8554345 intron Sema-1a + chr2L 8554420 intron Sema-1a + chr2L 8554495 intron Sema-1a + chr2L_16_8550001 chr2L_8550001 RAL-340_100b 299 chr2L 8578451 8578452 chr2L 16071771 16071771 15 7493319 39.0 25.0 32.0 0.5 7493320 chr2L 8578451 intron Sema-1a + chr2L 12325111 intergenic not near genes chr2L 16071771 intron beat-Ia + chr2L_15_12325001 chr2L_12325001 RAL-340_100b 300 chr2L 8578452 8578452 chr2L 16217660 16217660 4 7639208 39.0 70.5 54.8 0.1 7639208 chr2L 8578452 intron Sema-1a + chr2L 12398056 intergenic Pkd2 + chr2L 16217660 intergenic not near genes chr2L_4_12395001 chr2L_12395001 RAL-340_100b 301 chr2L 8594460 8594492 chr2L 8601519 8601571 297 8 7073 6.5 1.0 3.8 1.7 7111 chr2L 8594460 intron,3` UTR Sema-1a +,CR43855 - chr2L 8598016 intron Sema-1a + chr2L 8601571 intron Sema-1a + chr2L_8_8595001 chr2L_8595001 RAL-340_100b 302 chr2L 8723102 8723145 chr2L 8731494 8731540 Tirant 15 8399 2.0 8.0 5.0 2.5 8438 chr2L 8723102 intron raw - chr2L 8727321 intron raw - chr2L 8731540 intron raw - chr2L_15_8725001 chr2L_8725001 RAL-340_100b 303 chr2L 8736243 8736256 chr2L 8736348 8736356 5 102 2.0 7.5 4.8 0.9 113 chr2L 8736243 intron raw - chr2L 8736300 intron raw - chr2L 8736356 intron raw - chr2L_5_8735001 chr2L_8735001 RAL-340_100b 304 chr2L 8750737 8750777 chr2L 8750843 8750893 12 107 0.0 11.5 5.8 1.8 156 chr2L 8750737 intergenic not near genes chr2L 8750815 intergenic not near genes chr2L 8750893 intergenic not near genes chr2L_12_8750001 chr2L_8750001 RAL-340_100b 305 chr2L 8759975 8759980 chr2L 8760141 8760146 5 166 13.5 0.0 6.8 0.6 171 chr2L 8759975 intergenic not near genes chr2L 8760060 intergenic not near genes chr2L 8760146 intergenic not near genes chr2L_5_8760001 chr2L_8760001 RAL-340_100b 306 chr2L 8783947 8783999 chr2L 8784043 8784100 26 98 5.0 10.0 7.5 3.1 153 chr2L 8783947 intergenic not near genes chr2L 8784024 intergenic not near genes chr2L 8784100 intergenic not near genes chr2L_26_8780001 chr2L_8780001 RAL-340_100b 307 chr2L 8784680 8784687 chr2L 8784816 8784823 6 136 16.0 7.5 11.8 0.5 143 chr2L 8784680 intergenic not near genes chr2L 8784752 intergenic not near genes chr2L 8784823 intergenic not near genes chr2L_6_8780001 chr2L_8780001 RAL-340_100b 308 chr2L 8784689 8784726 chr2L 8784814 8784862 22 129 6.5 6.5 6.5 2.9 173 chr2L 8784689 intergenic not near genes chr2L 8784776 intergenic not near genes chr2L 8784862 intergenic not near genes chr2L_22_8780001 chr2L_8780001 RAL-340_100b 309 chr2L 8799774 8799832 chr2L 8799915 8799968 18 129 5.5 6.5 6.0 2.6 194 chr2L 8799774 intergenic not near genes chr2L 8799871 intergenic not near genes chr2L 8799968 intergenic not near genes chr2L_18_8795001 chr2L_8795001 RAL-340_100b 310 chr2L 8857971 8858006 chr2L 8858059 8858098 13 92 7.5 8.0 7.8 1.5 127 chr2L 8857971 intergenic not near genes chr2L 8858034 intergenic not near genes chr2L 8858098 intergenic not near genes chr2L_13_8855001 chr2L_8855001 RAL-340_100b 311 chr2L 8891895 8891904 chr2L 8891986 8891996 4 94 1.0 6.5 3.8 0.8 101 chr2L 8891895 3` UTR CG42713 + chr2L 8891946 3` UTR CG42713 + chr2L 8891996 3` UTR CG42713 + chr2L_4_8890001 chr2L_8890001 RAL-340_100b 312 chr2L 8997263 8997317 chr2L 8997615 8997658 24 342 79.0 69.0 74.0 0.3 395 chr2L 8997263 5` UTR alien - chr2L 8997460 intergenic alien -,CG18661 + chr2L 8997658 5` UTR CG18661 + chr2L_24_8995001 chr2L_8995001 RAL-340_100b 313 chr2L 9000259 9000308 chr2L 9007794 9007813 roo 17 7532 8.0 7.0 7.5 2.0 7554 chr2L 9000259 intergenic Try29F + chr2L 9004036 intergenic not near genes chr2L 9007813 intergenic not near genes chr2L_17_9000001 chr2L_9000001 RAL-340_100b 314 chr2L 9069666 9069675 chr2L 9069782 9069791 6 116 0.5 11.5 6.0 0.9 125 chr2L 9069666 intron CG31708 - chr2L 9069728 intron CG31708 - chr2L 9069791 intron CG31708 - chr2L_6_9065001 chr2L_9065001 RAL-340_100b 315 chr2L 9084336 9084337 chr2L 16217660 16217660 10 7133324 48.0 70.5 59.2 0.2 7133324 chr2L 9084336 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_10_12650001 chr2L_12650001 RAL-340_100b 316 chr2L 9084339 9084339 chr2L 16217660 16217660 43 7133321 46.5 70.5 58.5 0.7 7133321 chr2L 9084339 intron Toll-4 + chr2L 12651000 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_43_12650001 chr2L_12650001 RAL-340_100b 317 chr2L 9084340 9084340 chr2L 16217660 16217660 21 7133320 46.5 70.5 58.5 0.4 7133320 chr2L 9084340 intron Toll-4 + chr2L 12651000 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_21_12650001 chr2L_12650001 RAL-340_100b 318 chr2L 9148556 9148603 chr2L 9148667 9148715 9 110 11.0 1.5 6.2 1.2 159 chr2L 9148556 intron CG32982 + chr2L 9148636 intron CG32982 + chr2L 9148715 intron CG32982 + chr2L_9_9145001 chr2L_9145001 RAL-340_100b 319 chr2L 9224787 9224845 chr2L 9224898 9224956 34 109 10.0 8.5 9.2 3.3 169 chr2L 9224787 intron tai + chr2L 9224872 intron tai + chr2L 9224956 intron tai + chr2L_34_9220001 chr2L_9220001 RAL-340_100b 320 chr2L 9225054 9225082 chr2L 9225159 9225187 7 101 1.0 12.0 6.5 0.9 133 chr2L 9225054 intron tai + chr2L 9225120 intron tai + chr2L 9225187 intron tai + chr2L_7_9225001 chr2L_9225001 RAL-340_100b 321 chr2L 9225083 9225103 chr2L 9225154 9225208 9 88 0.5 8.0 4.2 1.7 125 chr2L 9225083 intron tai + chr2L 9225146 intron tai + chr2L 9225208 intron tai + chr2L_9_9225001 chr2L_9225001 RAL-340_100b 322 chr2L 9268225 9268270 chr2L 9268331 9268376 12 104 5.5 6.5 6.0 1.7 151 chr2L 9268225 intron Ggamma30A + chr2L 9268300 intron Ggamma30A + chr2L 9268376 intron Ggamma30A + chr2L_12_9265001 chr2L_9265001 RAL-340_100b 323 chr2L 9279962 9280021 chr2L 9280081 9280132 9 118 0.0 3.0 1.5 3.6 170 chr2L 9279962 intron Ggamma30A + chr2L 9280047 intron Ggamma30A + chr2L 9280132 intron Ggamma30A + chr2L_9_9280001 chr2L_9280001 RAL-340_100b 324 chr2L 9297353 9297383 chr2L 9297455 9297485 19 100 9.0 15.0 12.0 1.5 132 chr2L 9297353 3` UTR Ggamma30A + chr2L 9297419 3` UTR Ggamma30A + chr2L 9297485 3` UTR Ggamma30A + chr2L_19_9295001 chr2L_9295001 RAL-340_100b 325 chr2L 9300666 9300691 chr2L 9300787 9300791 6 116 9.5 0.5 5.0 1.0 125 chr2L 9300666 3` UTR Ggamma30A + chr2L 9300728 3` UTR Ggamma30A + chr2L 9300791 3` UTR Ggamma30A + chr2L_6_9300001 chr2L_9300001 RAL-340_100b 326 chr2L 9304324 9304506 chr2L 9304433 9304610 16 103 3.0 3.0 3.0 4.0 286 chr2L 9304324 intergenic CR42844 - chr2L 9304467 3` UTR CR42844 - chr2L 9304610 3` UTR CR42844 - chr2L_16_9300001 chr2L_9300001 RAL-340_100b 327 chr2L 9346721 9346771 chr2L 9346835 9346870 13 113 9.0 0.5 4.8 2.2 149 chr2L 9346721 intergenic not near genes chr2L 9346796 intergenic not near genes chr2L 9346870 intergenic not near genes chr2L_13_9345001 chr2L_9345001 RAL-340_100b 328 chr2L 9380263 9380321 chr2L 9380376 9380434 63 111 8.5 9.0 8.8 6.4 171 chr2L 9380263 intron Shawl - chr2L 9380348 intron Shawl - chr2L 9380434 exon Shawl - chr2L_63_9380001 chr2L_9380001 RAL-340_100b 329 chr2L 9387226 9387264 chr2L 9387349 9387366 16 120 13.0 8.5 10.8 1.4 140 chr2L 9387226 intron Shawl - chr2L 9387296 intron Shawl - chr2L 9387366 intron Shawl - chr2L_16_9385001 chr2L_9385001 RAL-340_100b 330 chr2L 9387269 9387277 chr2L 9387347 9387400 7 105 4.0 8.0 6.0 1.0 131 chr2L 9387269 intron Shawl - chr2L 9387334 intron Shawl - chr2L 9387400 intron,5` UTR Shawl -,Aldh + chr2L_7_9385001 chr2L_9385001 RAL-340_100b 331 chr2L 9393471 9393476 chr2L 9396463 9396468 jockey 6 2992 23.0 5.0 14.0 0.4 2997 chr2L 9393471 intron Shawl - chr2L 9394970 intron Shawl - chr2L 9396468 intron Shawl - chr2L_6_9390001 chr2L_9390001 RAL-340_100b 332 chr2L 9393486 9393525 chr2L 9396463 9396517 jockey 31 2990 9.5 5.0 7.2 3.8 3031 chr2L 9393486 intron Shawl - chr2L 9395002 intron Shawl - chr2L 9396517 intron Shawl - chr2L_31_9390001 chr2L_9390001 RAL-340_100b 333 chr2L 9444360 9444402 chr2L 9444969 9444986 14 604 3.5 11.0 7.2 1.7 626 chr2L 9444360 intron numb + chr2L 9444673 intron numb + chr2L 9444986 intron numb + chr2L_14_9440001 chr2L_9440001 RAL-340_100b 334 chr2L 9451025 9451066 chr2L 9451153 9451185 12 120 0.0 12.0 6.0 1.7 160 chr2L 9451025 intron numb + chr2L 9451105 intron numb + chr2L 9451185 intron numb + chr2L_12_9450001 chr2L_9450001 RAL-340_100b 335 chr2L 9454951 9454997 chr2L 9455078 9455124 14 126 11.0 8.5 9.8 1.3 173 chr2L 9454951 intron numb + chr2L 9455038 intron numb + chr2L 9455124 intron numb + chr2L_14_9455001 chr2L_9455001 RAL-340_100b 336 chr2L 9456908 9456961 chr2L 9457014 9457062 24 102 2.5 8.0 5.2 3.9 154 chr2L 9456908 intron numb + chr2L 9456985 intron numb + chr2L 9457062 intron numb + chr2L_24_9455001 chr2L_9455001 RAL-340_100b 337 chr2L 9458277 9458310 chr2L 9458608 9458647 17 331 6.5 12.0 9.2 1.7 370 chr2L 9458277 intron numb + chr2L 9458462 intron numb + chr2L 9458647 intron numb + chr2L_17_9455001 chr2L_9455001 RAL-340_100b 338 chr2L 9458314 9458323 chr2L 9458616 9458660 10 325 3.0 13.5 8.2 1.1 346 chr2L 9458314 intron numb + chr2L 9458487 intron numb + chr2L 9458660 intron numb + chr2L_10_9455001 chr2L_9455001 RAL-340_100b 339 chr2L 9493222 9493274 chr2L 9493331 9493383 22 105 12.0 3.5 7.8 2.5 161 chr2L 9493222 intron Gdi - chr2L 9493302 intron Gdi - chr2L 9493383 intron Gdi - chr2L_22_9490001 chr2L_9490001 RAL-340_100b 340 chr2L 9556872 9556920 chr2L 9556987 9557005 9 102 7.0 21.5 14.2 0.6 133 chr2L 9556872 intron jp - chr2L 9556938 intron jp - chr2L 9557005 intron jp - chr2L_9_9555001 chr2L_9555001 RAL-340_100b 341 chr2L 9623427 9623484 chr2L 9623764 9623806 11 333 8.5 15.0 11.8 0.9 379 chr2L 9623427 intergenic GlcAT-S + chr2L 9623616 intergenic not near genes chr2L 9623806 intergenic not near genes chr2L_11_9620001 chr2L_9620001 RAL-340_100b 342 chr2L 9719750 9719777 chr2L 9719858 9719885 10 107 1.0 3.5 2.2 3.1 135 chr2L 9719750 intron Nckx30C - chr2L 9719818 intron Nckx30C - chr2L 9719885 intron Nckx30C - chr2L_10_9715001 chr2L_9715001 RAL-340_100b 343 chr2L 9723025 9723025 chr2L 22522656 22522658 4 12799632 87.5 36.0 61.8 0.1 12799633 chr2L 9723025 intron Nckx30C - chr2L 16122842 intergenic not near genes chr2L 22522658 intergenic not near genes chr2L_4_16120001 chr2L_16120001 RAL-340_100b 344 chr2L 9837424 9837439 chr2L 9837527 9837542 5 103 5.0 5.0 5.0 0.8 118 chr2L 9837424 intron nAChRalpha6 - chr2L 9837483 intron nAChRalpha6 - chr2L 9837542 intron nAChRalpha6 - chr2L_5_9835001 chr2L_9835001 RAL-340_100b 345 chr2L 9871500 9871534 chr2L 9871609 9871643 7 109 3.5 4.0 3.8 1.5 143 chr2L 9871500 intron nAChRalpha6 - chr2L 9871572 intron nAChRalpha6 - chr2L 9871643 intron nAChRalpha6 - chr2L_7_9870001 chr2L_9870001 RAL-340_100b 346 chr2L 9893639 9893689 chr2L 9893738 9893750 16 94 2.5 2.5 2.5 4.6 111 chr2L 9893639 intergenic Uhg2 -,mtDNA-helicase -,snoRNA:U14:30Eb - chr2L 9893694 intergenic Uhg2 -,mtDNA-helicase -,snoRNA:U14:30Eb - chr2L 9893750 intergenic Uhg2 -,snoRNA:U14:30Eb -,mtDNA-helicase -,snoRNA:U14:30Ea - chr2L_16_9890001 chr2L_9890001 RAL-340_100b 347 chr2L 9973709 9973758 chr2L 9980853 9980896 HMS-Beagle 18 7135 5.0 9.5 7.2 2.2 7187 chr2L 9973709 intergenic not near genes chr2L 9977302 intergenic not near genes chr2L 9980896 intergenic not near genes chr2L_18_9975001 chr2L_9975001 RAL-340_100b 348 chr2L 9986342 9986378 chr2L 9986444 9986493 18 106 10.0 11.5 10.8 1.5 151 chr2L 9986342 intron bib + chr2L 9986418 intron bib + chr2L 9986493 intron bib + chr2L_18_9985001 chr2L_9985001 RAL-340_100b 349 chr2L 10005080 10005129 chr2L 10005198 10005247 25 115 12.0 10.5 11.2 2.0 167 chr2L 10005080 intron CG4747 + chr2L 10005164 intron CG4747 + chr2L 10005247 intron CG4747 + chr2L_25_10005001 chr2L_10005001 RAL-340_100b 350 chr2L 10023777 10023832 chr2L 10023897 10023950 20 118 5.5 3.5 4.5 3.6 173 chr2L 10023777 intergenic not near genes chr2L 10023864 intergenic not near genes chr2L 10023950 intergenic not near genes chr2L_20_10020001 chr2L_10020001 RAL-340_100b 351 chr2L 10051722 10051735 chr2L 10051815 10051845 7 99 24.0 15.5 19.8 0.3 123 chr2L 10051722 5` UTR CR44874 + chr2L 10051784 5` UTR CR44874 + chr2L 10051845 5` UTR CR44874 + chr2L_7_10050001 chr2L_10050001 RAL-340_100b 352 chr2L 10051736 10051748 chr2L 10051813 10051843 10 93 17.5 14.5 16.0 0.6 107 chr2L 10051736 5` UTR CR44874 + chr2L 10051790 5` UTR CR44874 + chr2L 10051843 5` UTR CR44874 + chr2L_10_10050001 chr2L_10050001 RAL-340_100b 353 chr2L 10051749 10051753 chr2L 10051812 10051838 12 89 15.5 13.5 14.5 0.8 89 chr2L 10051749 5` UTR CR44874 + chr2L 10051794 5` UTR CR44874 + chr2L 10051838 5` UTR CR44874 + chr2L_12_10050001 chr2L_10050001 RAL-340_100b 354 chr2L 10095622 10095663 chr2L 10095717 10095725 22 96 6.5 9.5 8.0 2.4 103 chr2L 10095622 intron CG44153 - chr2L 10095674 intron CG44153 - chr2L 10095725 intron CG44153 - chr2L_22_10095001 chr2L_10095001 RAL-340_100b 355 chr2L 10105269 10105307 chr2L 10105360 10105408 20 98 6.0 17.0 11.5 1.6 139 chr2L 10105269 intron,intron CG44153 -,CG34109 + chr2L 10105338 intron,intron CG44153 -,CG34109 + chr2L 10105408 intron,intron CG44153 -,CG34109 + chr2L_20_10105001 chr2L_10105001 RAL-340_100b 356 chr2L 10153194 10153238 chr2L 10153286 10153302 17 93 6.5 6.5 6.5 2.3 108 chr2L 10153194 intron,exon CG44153 -,CG4839 + chr2L 10153248 intron,intron CG44153 -,CG4839 + chr2L 10153302 intron,intron CG44153 -,CG4839 + chr2L_17_10150001 chr2L_10150001 RAL-340_100b 357 chr2L 10156302 10156346 chr2L 10163797 10163841 blood 12 7493 18.5 6.5 12.5 0.9 7539 chr2L 10156302 intron,3` UTR CG44153 -,CG4839 + chr2L 10160072 intron CG44153 - chr2L 10163841 intron CG44153 - chr2L_12_10160001 chr2L_10160001 RAL-340_100b 358 chr2L 10176023 10176023 chr2L 16071768 16071771 6 5895748 47.0 25.0 36.0 0.2 5895748 chr2L 10176023 intron CG44153 - chr2L 13123897 intergenic not near genes chr2L 16071771 intron beat-Ia + chr2L_6_13120001 chr2L_13120001 RAL-340_100b 359 chr2L 10176024 10176024 chr2L 16071771 16071771 24 5895747 48.0 25.0 36.5 0.6 5895747 chr2L 10176024 intron CG44153 - chr2L 13123898 intergenic not near genes chr2L 16071771 intron beat-Ia + chr2L_24_13120001 chr2L_13120001 RAL-340_100b 360 chr2L 10176024 10176024 chr2L 16217660 16217660 12 6041636 48.0 70.5 59.2 0.2 6041636 chr2L 10176024 intron CG44153 - chr2L 13196842 3` UTR Edem2 + chr2L 16217660 intergenic not near genes chr2L_12_13195001 chr2L_13195001 RAL-340_100b 361 chr2L 10177384 10177393 chr2L 10177489 10177493 4 104 7.0 6.5 6.8 0.5 109 chr2L 10177384 intron CG44153 - chr2L 10177438 intron CG44153 - chr2L 10177493 intron CG44153 - chr2L_4_10175001 chr2L_10175001 RAL-340_100b 362 chr2L 10204477 10204521 chr2L 10204585 10204628 12 107 3.5 1.0 2.2 3.8 151 chr2L 10204477 intergenic CG34159 -,CG5734 - chr2L 10204552 intergenic CG5734 -,CG34159 - chr2L 10204628 intergenic CG5734 -,CG34159 - chr2L_12_10200001 chr2L_10200001 RAL-340_100b 363 chr2L 10220735 10220776 chr2L 10220847 10220888 21 108 13.5 7.0 10.2 1.9 153 chr2L 10220735 intron Npc1a - chr2L 10220812 intron Npc1a - chr2L 10220888 intron Npc1a - chr2L_21_10220001 chr2L_10220001 RAL-340_100b 364 chr2L 10220781 10220784 chr2L 10220863 10220896 5 104 13.0 11.5 12.2 0.4 115 chr2L 10220781 intron Npc1a - chr2L 10220838 intron Npc1a - chr2L 10220896 intron Npc1a - chr2L_5_10220001 chr2L_10220001 RAL-340_100b 365 chr2L 10220785 10220791 chr2L 10220862 10220903 5 98 9.0 11.5 10.2 0.4 118 chr2L 10220785 intron Npc1a - chr2L 10220844 intron Npc1a - chr2L 10220903 intron Npc1a - chr2L_5_10220001 chr2L_10220001 RAL-340_100b 366 chr2L 10258413 10258440 chr2L 10258521 10258550 12 109 4.0 9.5 6.8 1.5 137 chr2L 10258413 intron Pten - chr2L 10258482 intron Pten - chr2L 10258550 exon Pten - chr2L_12_10255001 chr2L_10255001 RAL-340_100b 367 chr2L 10294657 10294689 chr2L 10294768 10294800 8 111 7.5 6.5 7.0 1.0 143 chr2L 10294657 intron Hand - chr2L 10294728 intron Hand - chr2L 10294800 intron Hand - chr2L_8_10290001 chr2L_10290001 RAL-340_100b 368 chr2L 10442096 10442139 chr2L 10442207 10442250 22 108 5.5 6.0 5.8 3.2 154 chr2L 10442096 3` UTR CR45375 - chr2L 10442173 3` UTR CR45375 - chr2L 10442250 intergenic CR45375 -,loh + chr2L_22_10440001 chr2L_10440001 RAL-340_100b 369 chr2L 10458188 10458213 chr2L 10458309 10458334 9 121 0.0 4.5 2.2 2.8 146 chr2L 10458188 intron LM408 + chr2L 10458261 intron LM408 + chr2L 10458334 intron LM408 + chr2L_9_10455001 chr2L_10455001 RAL-340_100b 370 chr2L 10474359 10474397 chr2L 10474465 10474493 10 102 7.0 6.0 6.5 1.3 134 chr2L 10474359 intergenic RluA-1 - chr2L 10474426 intergenic RluA-1 - chr2L 10474493 intergenic RluA-1 - chr2L_10_10470001 chr2L_10470001 RAL-340_100b 371 chr2L 10490251 10490268 chr2L 10490358 10490375 9 105 12.5 9.0 10.8 0.8 124 chr2L 10490251 3` UTR,3` UTR CG6144 +,CG13144 - chr2L 10490313 3` UTR,3` UTR CG6144 +,CG13144 - chr2L 10490375 3` UTR,3` UTR CG6144 +,CG13144 - chr2L_9_10490001 chr2L_10490001 RAL-340_100b 372 chr2L 10490279 10490282 chr2L 10490372 10490377 4 99 11.0 14.0 12.5 0.3 98 chr2L 10490279 3` UTR,3` UTR CG6144 +,CG13144 - chr2L 10490328 3` UTR,3` UTR CG6144 +,CG13144 - chr2L 10490377 3` UTR,3` UTR CG6144 +,CG13144 - chr2L_4_10490001 chr2L_10490001 RAL-340_100b 373 chr2L 10490283 10490308 chr2L 10490365 10490415 15 99 5.0 11.5 8.2 1.6 132 chr2L 10490283 3` UTR,3` UTR CG6144 +,CG13144 - chr2L 10490349 3` UTR,3` UTR CG6144 +,CG13144 - chr2L 10490415 3` UTR,3` UTR CG6144 +,CG13144 - chr2L_15_10490001 chr2L_10490001 RAL-340_100b 374 chr2L 10495320 10495328 chr2L 10495422 10495430 4 102 5.0 11.0 8.0 0.4 110 chr2L 10495320 intron Myo31DF - chr2L 10495375 intron Myo31DF - chr2L 10495430 intron Myo31DF - chr2L_4_10495001 chr2L_10495001 RAL-340_100b 375 chr2L 10522358 10522358 chr2L 16071771 16071771 10 5549413 60.5 25.0 42.8 0.2 5549413 chr2L 10522358 intergenic not near genes chr2L 13297064 intron CG31729 + chr2L 16071771 intron beat-Ia + chr2L_10_13295001 chr2L_13295001 RAL-340_100b 376 chr2L 10531589 10531626 chr2L 10531706 10531743 6 117 0.0 5.5 2.8 1.6 154 chr2L 10531589 3` UTR Lip4 + chr2L 10531666 3` UTR Lip4 + chr2L 10531743 3` UTR Lip4 + chr2L_6_10530001 chr2L_10530001 RAL-340_100b 377 chr2L 10579023 10579081 chr2L 10579138 10579196 19 113 4.0 4.0 4.0 3.8 173 chr2L 10579023 intron Trim9 + chr2L 10579110 intron Trim9 + chr2L 10579196 intron Trim9 + chr2L_19_10575001 chr2L_10575001 RAL-340_100b 378 chr2L 10592826 10592832 chr2L 10600513 10600519 opus 4 7687 5.5 6.5 6.0 0.6 7693 chr2L 10592826 intron Trim9 + chr2L 10596672 intron Trim9 + chr2L 10600519 intron Trim9 + chr2L_4_10595001 chr2L_10595001 RAL-340_100b 379 chr2L 10592834 10592873 chr2L 10600511 10600560 opus 21 7682 3.0 6.5 4.8 3.6 7726 chr2L 10592834 intron Trim9 + chr2L 10596697 intron Trim9 + chr2L 10600560 intron Trim9 + chr2L_21_10595001 chr2L_10595001 RAL-340_100b 380 chr2L 10686156 10686172 chr2L 10686266 10686282 11 109 9.5 0.0 4.8 1.9 126 chr2L 10686156 3` UTR CG7296 - chr2L 10686219 3` UTR CG7296 - chr2L 10686282 3` UTR CG7296 - chr2L_11_10685001 chr2L_10685001 RAL-340_100b 381 chr2L 10688521 10688574 chr2L 10688622 10688675 20 100 4.0 5.5 4.8 3.4 154 chr2L 10688521 intergenic CG7294 - chr2L 10688598 intergenic CG7294 - chr2L 10688675 intergenic CG7294 - chr2L_20_10685001 chr2L_10685001 RAL-340_100b 382 chr2L 10704892 10704948 chr2L 10705012 10705068 19 119 11.5 5.5 8.5 2.0 176 chr2L 10704892 intron,exon Lip2 -,CG6415 + chr2L 10704980 intron Lip2 - chr2L 10705068 exon Lip2 - chr2L_19_10700001 chr2L_10700001 RAL-340_100b 383 chr2L 10705437 10705461 chr2L 10705544 10705569 9 101 14.0 10.0 12.0 0.7 132 chr2L 10705437 exon Lip2 - chr2L 10705503 intron Lip2 - chr2L 10705569 intron Lip2 - chr2L_9_10705001 chr2L_10705001 RAL-340_100b 384 chr2L 10705463 10705481 chr2L 10705536 10705589 20 100 9.5 8.5 9.0 2.0 126 chr2L 10705463 exon Lip2 - chr2L 10705526 intron Lip2 - chr2L 10705589 intron Lip2 - chr2L_20_10705001 chr2L_10705001 RAL-340_100b 385 chr2L 10721266 10721310 chr2L 10721365 10721369 18 99 6.0 3.5 4.8 3.1 103 chr2L 10721266 intergenic not near genes chr2L 10721318 intergenic not near genes chr2L 10721369 intergenic not near genes chr2L_18_10720001 chr2L_10720001 RAL-340_100b 386 chr2L 10721852 10721904 chr2L 10721953 10722005 11 99 4.0 11.5 7.8 1.2 153 chr2L 10721852 intergenic not near genes chr2L 10721928 intergenic not near genes chr2L 10722005 intergenic not near genes chr2L_11_10720001 chr2L_10720001 RAL-340_100b 387 chr2L 10791834 10791857 chr2L 10791939 10791952 7 102 11.0 9.0 10.0 0.6 118 chr2L 10791834 intron CG31869 - chr2L 10791893 intron CG31869 - chr2L 10791952 intron CG31869 - chr2L_7_10790001 chr2L_10790001 RAL-340_100b 388 chr2L 10791858 10791893 chr2L 10791937 10791998 14 101 5.0 8.5 6.8 1.8 140 chr2L 10791858 intron CG31869 - chr2L 10791928 intron CG31869 - chr2L 10791998 intron CG31869 - chr2L_14_10790001 chr2L_10790001 RAL-340_100b 389 chr2L 10803748 10803805 chr2L 10803858 10803916 9 111 5.0 3.5 4.2 1.7 168 chr2L 10803748 intergenic not near genes chr2L 10803832 intergenic Nos - chr2L 10803916 intergenic Nos - chr2L_9_10800001 chr2L_10800001 RAL-340_100b 390 chr2L 10813659 10813695 chr2L 10813836 10813872 12 175 6.5 3.5 5.0 2.0 213 chr2L 10813659 intron Nos - chr2L 10813766 intron Nos - chr2L 10813872 intron Nos - chr2L_12_10810001 chr2L_10810001 RAL-340_100b 391 chr2L 10813696 10813707 chr2L 10813833 10813838 4 145 4.5 2.5 3.5 0.9 142 chr2L 10813696 intron Nos - chr2L 10813767 intron Nos - chr2L 10813838 intron Nos - chr2L_4_10810001 chr2L_10810001 RAL-340_100b 392 chr2L 10850128 10850156 chr2L 10850243 10850263 21 117 28.0 8.0 18.0 1.1 135 chr2L 10850128 5` UTR porin - chr2L 10850196 5` UTR,5` UTR porin -,CG43129 + chr2L 10850263 5` UTR,intron porin -,CG43129 + chr2L_21_10850001 chr2L_10850001 RAL-340_100b 393 chr2L 10850172 10850174 chr2L 10850247 10850289 4 97 21.0 8.5 14.8 0.3 117 chr2L 10850172 5` UTR,5` UTR porin -,CG43129 + chr2L 10850230 5` UTR,5` UTR porin -,CG43129 + chr2L 10850289 5` UTR,intron porin -,CG43129 + chr2L_4_10850001 chr2L_10850001 RAL-340_100b 394 chr2L 10850175 10850176 chr2L 10850243 10850284 5 103 20.5 8.0 14.2 0.3 109 chr2L 10850175 5` UTR,5` UTR porin -,CG43129 + chr2L 10850230 5` UTR,5` UTR porin -,CG43129 + chr2L 10850284 5` UTR,intron porin -,CG43129 + chr2L_5_10850001 chr2L_10850001 RAL-340_100b 395 chr2L 10852154 10852181 chr2L 10852268 10852295 5 114 0.0 10.0 5.0 0.8 141 chr2L 10852154 intron CG43129 + chr2L 10852224 intron CG43129 + chr2L 10852295 intron CG43129 + chr2L_5_10850001 chr2L_10850001 RAL-340_100b 396 chr2L 10862838 10862879 chr2L 10864457 10864463 Rt1c 25 1625 8.5 9.5 9.0 2.5 1625 chr2L 10862838 3` UTR CR43807 - chr2L 10863650 intron CR43807 - chr2L 10864463 3` UTR CR43807 - chr2L_25_10860001 chr2L_10860001 RAL-340_100b 397 chr2L 10876347 10876383 chr2L 10876456 10876488 12 106 8.5 9.0 8.8 1.2 141 chr2L 10876347 intergenic not near genes chr2L 10876418 intergenic not near genes chr2L 10876488 intergenic not near genes chr2L_12_10875001 chr2L_10875001 RAL-340_100b 398 chr2L 10891459 10891474 chr2L 10891599 10891613 5 140 17.5 5.5 11.5 0.4 154 chr2L 10891459 intergenic not near genes chr2L 10891536 intergenic not near genes chr2L 10891613 intergenic not near genes chr2L_5_10890001 chr2L_10890001 RAL-340_100b 399 chr2L 10891476 10891514 chr2L 10891595 10891637 7 133 6.5 5.5 6.0 1.0 161 chr2L 10891476 intergenic not near genes chr2L 10891556 intergenic not near genes chr2L 10891637 intergenic not near genes chr2L_7_10890001 chr2L_10890001 RAL-340_100b 400 chr2L 10912965 10912996 chr2L 10913069 10913089 11 102 13.5 12.0 12.8 0.8 124 chr2L 10912965 intergenic not near genes chr2L 10913027 intergenic not near genes chr2L 10913089 intergenic not near genes chr2L_11_10910001 chr2L_10910001 RAL-340_100b 401 chr2L 10946942 10946968 chr2L 10956165 10956208 roo 14 9235 12.5 20.0 16.2 0.8 9266 chr2L 10946942 intron dpr2 - chr2L 10951575 intron dpr2 - chr2L 10956208 intron dpr2 - chr2L_14_10950001 chr2L_10950001 RAL-340_100b 402 chr2L 11056549 11056582 chr2L 11056656 11056689 4 107 7.0 7.0 7.0 0.5 140 chr2L 11056549 intron Samuel - chr2L 11056619 intron Samuel - chr2L 11056689 intron Samuel - chr2L_4_11055001 chr2L_11055001 RAL-340_100b 403 chr2L 11056584 11056594 chr2L 11056646 11056701 5 98 4.5 6.0 5.2 0.8 117 chr2L 11056584 intron Samuel - chr2L 11056642 intron Samuel - chr2L 11056701 intron Samuel - chr2L_5_11055001 chr2L_11055001 RAL-340_100b 404 chr2L 11142488 11142543 chr2L 11142594 11142650 33 102 4.5 8.5 6.5 4.4 162 chr2L 11142488 intron Gyc32E - chr2L 11142569 intron Gyc32E - chr2L 11142650 intron Gyc32E - chr2L_33_11140001 chr2L_11140001 RAL-340_100b 405 chr2L 11145678 11145736 chr2L 11145841 11145899 21 163 6.5 22.0 14.2 1.4 221 chr2L 11145678 intron Gyc32E - chr2L 11145788 intron Gyc32E - chr2L 11145899 intron Gyc32E - chr2L_21_11145001 chr2L_11145001 RAL-340_100b 406 chr2L 11150047 11150079 chr2L 11150149 11150168 17 100 12.0 7.0 9.5 1.6 121 chr2L 11150047 intergenic not near genes chr2L 11150108 intergenic not near genes chr2L 11150168 intergenic not near genes chr2L_17_11150001 chr2L_11150001 RAL-340_100b 407 chr2L 11150088 11150105 chr2L 11150172 11150207 9 98 7.0 9.0 8.0 1.0 119 chr2L 11150088 intergenic not near genes chr2L 11150148 intergenic not near genes chr2L 11150207 intergenic not near genes chr2L_9_11150001 chr2L_11150001 RAL-340_100b 408 chr2L 11312319 11312367 chr2L 11312427 11312448 22 100 9.0 16.5 12.8 1.6 129 chr2L 11312319 intergenic not near genes chr2L 11312384 intergenic not near genes chr2L 11312448 intergenic not near genes chr2L_22_11310001 chr2L_11310001 RAL-340_100b 409 chr2L 11313081 11313135 chr2L 11313185 11313238 22 97 13.5 15.5 14.5 1.4 157 chr2L 11313081 intergenic not near genes chr2L 11313160 intergenic not near genes chr2L 11313238 intergenic not near genes chr2L_22_11310001 chr2L_11310001 RAL-340_100b 410 chr2L 11315255 11315267 chr2L 11317674 11317695 G2 9 2427 8.0 1.5 4.8 1.6 2440 chr2L 11315255 intergenic not near genes chr2L 11316475 intergenic not near genes chr2L 11317695 intergenic not near genes chr2L_9_11315001 chr2L_11315001 RAL-340_100b 411 chr2L 11339715 11339742 chr2L 11339813 11339835 12 99 13.5 5.5 9.5 1.1 120 chr2L 11339715 intergenic not near genes chr2L 11339775 intergenic not near genes chr2L 11339835 intergenic not near genes chr2L_12_11335001 chr2L_11335001 RAL-340_100b 412 chr2L 11380585 11380638 chr2L 11380687 11380719 33 99 4.5 6.5 5.5 5.1 134 chr2L 11380585 intergenic not near genes chr2L 11380652 intergenic not near genes chr2L 11380719 intergenic not near genes chr2L_33_11380001 chr2L_11380001 RAL-340_100b 413 chr2L 11404766 11404778 chr2L 11404867 11404879 4 100 13.5 7.0 10.2 0.4 113 chr2L 11404766 intergenic not near genes chr2L 11404822 intergenic not near genes chr2L 11404879 intergenic not near genes chr2L_4_11400001 chr2L_11400001 RAL-340_100b 414 chr2L 11404783 11404811 chr2L 11404863 11404892 17 95 6.5 4.5 5.5 2.6 109 chr2L 11404783 intergenic not near genes chr2L 11404838 intergenic not near genes chr2L 11404892 intergenic not near genes chr2L_17_11400001 chr2L_11400001 RAL-340_100b 415 chr2L 11418633 11418686 chr2L 11418737 11418790 22 97 2.5 7.5 5.0 3.7 157 chr2L 11418633 intergenic not near genes chr2L 11418712 intergenic not near genes chr2L 11418790 intergenic not near genes chr2L_22_11415001 chr2L_11415001 RAL-340_100b 416 chr2L 11443166 11443182 chr2L 11443278 11443278 6 109 19.0 11.0 15.0 0.4 112 chr2L 11443166 intron salm - chr2L 11443222 intron salm - chr2L 11443278 intron salm - chr2L_6_11440001 chr2L_11440001 RAL-340_100b 417 chr2L 11443185 11443198 chr2L 11443276 11443312 13 109 14.5 10.5 12.5 1.0 127 chr2L 11443185 intron salm - chr2L 11443248 intron salm - chr2L 11443312 intron salm - chr2L_13_11440001 chr2L_11440001 RAL-340_100b 418 chr2L 11455157 11455185 chr2L 11455250 11455288 13 102 9.5 5.0 7.2 1.6 131 chr2L 11455157 intergenic not near genes chr2L 11455222 intergenic not near genes chr2L 11455288 intergenic not near genes chr2L_13_11455001 chr2L_11455001 RAL-340_100b 419 chr2L 11455188 11455201 chr2L 11455246 11455304 7 95 6.5 4.0 5.2 1.1 116 chr2L 11455188 intergenic not near genes chr2L 11455246 intergenic not near genes chr2L 11455304 intergenic not near genes chr2L_7_11455001 chr2L_11455001 RAL-340_100b 420 chr2L 11458922 11458976 chr2L 11459063 11459112 26 138 6.0 9.5 7.8 3.0 190 chr2L 11458922 intergenic not near genes chr2L 11459017 intergenic not near genes chr2L 11459112 intergenic not near genes chr2L_26_11455001 chr2L_11455001 RAL-340_100b 421 chr2L 11470271 11470288 chr2L 11470372 11470388 11 97 26.5 21.0 23.8 0.4 117 chr2L 11470271 intergenic not near genes chr2L 11470330 intergenic not near genes chr2L 11470388 intergenic not near genes chr2L_11_11470001 chr2L_11470001 RAL-340_100b 422 chr2L 11470290 11470318 chr2L 11470369 11470379 22 86 14.0 21.5 17.8 1.2 89 chr2L 11470290 intergenic not near genes chr2L 11470334 intergenic not near genes chr2L 11470379 intergenic not near genes chr2L_22_11470001 chr2L_11470001 RAL-340_100b 423 chr2L 11491113 11491155 chr2L 11491207 11491261 8 101 9.0 5.0 7.0 1.0 148 chr2L 11491113 intergenic not near genes chr2L 11491187 intergenic not near genes chr2L 11491261 intergenic not near genes chr2L_8_11490001 chr2L_11490001 RAL-340_100b 424 chr2L 11492990 11492996 chr2L 11493155 11493161 5 165 0.0 4.0 2.0 1.7 171 chr2L 11492990 intergenic not near genes chr2L 11493076 intergenic not near genes chr2L 11493161 intergenic not near genes chr2L_5_11490001 chr2L_11490001 RAL-340_100b 425 chr2L 11540557 11540606 chr2L 11547984 11548033 Tabor 8 7425 3.5 11.0 7.2 1.0 7476 chr2L 11540557 intergenic not near genes chr2L 11544295 intergenic not near genes chr2L 11548033 intergenic not near genes chr2L_8_11540001 chr2L_11540001 RAL-340_100b 426 chr2L 11563631 11563664 chr2L 11568843 11568893 copia 9 5220 6.5 7.5 7.0 1.1 5262 chr2L 11563631 intergenic not near genes chr2L 11566262 intergenic not near genes chr2L 11568893 intergenic not near genes chr2L_9_11565001 chr2L_11565001 RAL-340_100b 427 chr2L 11584653 11584662 chr2L 11584753 11584753 4 100 23.5 6.5 15.0 0.2 100 chr2L 11584653 intron kek2 + chr2L 11584703 intron kek2 + chr2L 11584753 intron kek2 + chr2L_4_11580001 chr2L_11580001 RAL-340_100b 428 chr2L 11614037 11614086 chr2L 11615546 11615563 hopper2 24 1500 11.5 13.0 12.2 1.8 1526 chr2L 11614037 intron kek2 + chr2L 11614800 intron kek2 + chr2L 11615563 intron kek2 + chr2L_24_11610001 chr2L_11610001 RAL-340_100b 429 chr2L 11633147 11633197 chr2L 11633274 11633303 10 118 6.0 8.0 7.0 1.2 156 chr2L 11633147 intergenic not near genes chr2L 11633225 intergenic not near genes chr2L 11633303 intergenic not near genes chr2L_10_11630001 chr2L_11630001 RAL-340_100b 430 chr2L 9154306 9154317 chr2L 11636333 11636336 5 2482023 48.5 45.0 46.8 0.1 2482030 chr2L 9154306 intron CG32982 + chr2L 10395321 intron Mdh1 - chr2L 11636336 intergenic not near genes chr2L_5_10395001 chr2L_10395001 RAL-340_100b 431 chr2L 11674667 11674723 chr2L 11675045 11675086 43 376 22.0 12.5 17.2 2.4 419 chr2L 11674667 intergenic not near genes chr2L 11674876 intergenic not near genes chr2L 11675086 intergenic not near genes chr2L_43_11670001 chr2L_11670001 RAL-340_100b 432 chr2L 11681762 11681772 chr2L 11681874 11681884 4 112 17.5 0.0 8.8 0.4 122 chr2L 11681762 intergenic not near genes chr2L 11681823 intergenic not near genes chr2L 11681884 intergenic not near genes chr2L_4_11680001 chr2L_11680001 RAL-340_100b 433 chr2L 11704619 11704667 chr2L 11704710 11704768 7 96 3.0 2.0 2.5 2.0 149 chr2L 11704619 intergenic not near genes chr2L 11704694 intergenic not near genes chr2L 11704768 intergenic not near genes chr2L_7_11700001 chr2L_11700001 RAL-340_100b 434 chr2L 11710143 11710153 chr2L 11710244 11710254 5 101 5.5 0.0 2.8 1.3 111 chr2L 11710143 intergenic not near genes chr2L 11710198 intergenic not near genes chr2L 11710254 intergenic not near genes chr2L_5_11710001 chr2L_11710001 RAL-340_100b 435 chr2L 11713486 11713509 chr2L 11720979 11720992 blood 5 7489 13.5 8.5 11.0 0.4 7506 chr2L 11713486 intergenic not near genes chr2L 11717239 intergenic not near genes chr2L 11720992 intergenic CR44143 + chr2L_5_11715001 chr2L_11715001 RAL-340_100b 436 chr2L 11713511 11713540 chr2L 11720976 11721021 blood 14 7485 10.0 8.0 9.0 1.4 7510 chr2L 11713511 intergenic not near genes chr2L 11717266 intergenic not near genes chr2L 11721021 intergenic CR44143 + chr2L_14_11715001 chr2L_11715001 RAL-340_100b 437 chr2L 11781009 11781186 chr2L 11781118 11781285 13 105 0.0 0.0 0.0 13.0 276 chr2L 11781009 intergenic not near genes chr2L 11781147 intergenic not near genes chr2L 11781285 intergenic not near genes chr2L_13_11780001 chr2L_11780001 RAL-340_100b 438 chr2L 11800994 11801003 chr2L 16217660 16217660 4 4416662 95.5 70.5 83.0 0.0 4416666 chr2L 11800994 intron crol - chr2L 14009327 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_4_14005001 chr2L_14005001 RAL-340_100b 439 chr2L 11886428 11886442 chr2L 11886552 11886566 9 120 21.0 9.0 15.0 0.6 138 chr2L 11886428 intron Pde1c - chr2L 11886497 intron Pde1c - chr2L 11886566 intron Pde1c - chr2L_9_11885001 chr2L_11885001 RAL-340_100b 440 chr2L 11889405 11889449 chr2L 11889768 11889817 20 366 10.5 9.5 10.0 1.8 412 chr2L 11889405 intron Pde1c - chr2L 11889611 intron Pde1c - chr2L 11889817 intron Pde1c - chr2L_20_11885001 chr2L_11885001 RAL-340_100b 441 chr2L 11892524 11892551 chr2L 11892638 11892665 12 113 12.0 6.5 9.2 1.2 141 chr2L 11892524 intron Pde1c - chr2L 11892594 intron Pde1c - chr2L 11892665 intron Pde1c - chr2L_12_11890001 chr2L_11890001 RAL-340_100b 442 chr2L 11894350 11894393 chr2L 11894456 11894509 14 113 10.5 14.0 12.2 1.1 159 chr2L 11894350 intron Pde1c - chr2L 11894430 intron Pde1c - chr2L 11894509 intron Pde1c - chr2L_14_11890001 chr2L_11890001 RAL-340_100b 443 chr2L 11951954 11951971 chr2L 11952067 11952076 7 111 15.5 8.5 12.0 0.5 122 chr2L 11951954 intergenic CR43314 - chr2L 11952015 intergenic CR43314 - chr2L 11952076 intergenic CR43314 - chr2L_7_11950001 chr2L_11950001 RAL-340_100b 444 chr2L 11979471 11979521 chr2L 11979603 11979653 28 129 7.0 13.0 10.0 2.5 182 chr2L 11979471 intergenic not near genes chr2L 11979562 intergenic not near genes chr2L 11979653 intergenic not near genes chr2L_28_11975001 chr2L_11975001 RAL-340_100b 445 chr2L 12031377 12031393 chr2L 12031483 12031499 5 106 13.5 12.5 13.0 0.4 122 chr2L 12031377 intron dmGlut + chr2L 12031438 intron dmGlut + chr2L 12031499 intron dmGlut + chr2L_5_12030001 chr2L_12030001 RAL-340_100b 446 chr2L 12031400 12031418 chr2L 12031474 12031524 10 102 5.5 12.0 8.8 1.0 124 chr2L 12031400 intron dmGlut + chr2L 12031462 intron dmGlut + chr2L 12031524 intron dmGlut + chr2L_10_12030001 chr2L_12030001 RAL-340_100b 447 chr2L 12067312 12067331 chr2L 12074389 12074408 297 9 7077 18.5 11.0 14.8 0.6 7096 chr2L 12067312 intergenic not near genes chr2L 12070860 intergenic not near genes chr2L 12074408 intergenic not near genes chr2L_9_12070001 chr2L_12070001 RAL-340_100b 448 chr2L 12067332 12067340 chr2L 12074387 12074417 297 10 7074 15.5 10.5 13.0 0.7 7085 chr2L 12067332 intergenic not near genes chr2L 12070874 intergenic not near genes chr2L 12074417 intergenic not near genes chr2L_10_12070001 chr2L_12070001 RAL-340_100b 449 chr2L 12067343 12067352 chr2L 12074415 12074429 297 6 7076 11.5 21.0 16.2 0.3 7086 chr2L 12067343 intergenic not near genes chr2L 12070886 intergenic not near genes chr2L 12074429 intergenic not near genes chr2L_6_12070001 chr2L_12070001 RAL-340_100b 450 chr2L 12067353 12067357 chr2L 12074387 12074429 297 4 7056 10.0 10.5 10.2 0.4 7076 chr2L 12067353 intergenic not near genes chr2L 12070891 intergenic not near genes chr2L 12074429 intergenic not near genes chr2L_4_12070001 chr2L_12070001 RAL-340_100b 451 chr2L 12157583 12157639 chr2L 12157687 12157744 9 99 5.5 3.0 4.2 1.7 161 chr2L 12157583 intron CG31760 + chr2L 12157664 intron CG31760 + chr2L 12157744 intron CG31760 + chr2L_9_12155001 chr2L_12155001 RAL-340_100b 452 chr2L 12158497 12158542 chr2L 12158714 12158758 8 214 4.0 8.0 6.0 1.1 261 chr2L 12158497 intron CG31760 + chr2L 12158628 intron CG31760 + chr2L 12158758 intron CG31760 + chr2L_8_12155001 chr2L_12155001 RAL-340_100b 453 chr2L 12176188 12176244 chr2L 12176294 12176350 13 105 1.5 2.0 1.8 4.6 162 chr2L 12176188 intron,intron aret +,atilla - chr2L 12176269 intron,intron aret +,atilla - chr2L 12176350 intron,intron aret +,atilla - chr2L_13_12175001 chr2L_12175001 RAL-340_100b 454 chr2L 12210024 12210045 chr2L 12210138 12210158 7 113 8.0 8.0 8.0 0.8 134 chr2L 12210024 intron aret + chr2L 12210091 intron aret + chr2L 12210158 intron aret + chr2L_7_12210001 chr2L_12210001 RAL-340_100b 455 chr2L 12229557 12229609 chr2L 12229655 12229711 11 98 2.5 1.5 2.0 3.7 154 chr2L 12229557 intron aret + chr2L 12229634 intron aret + chr2L 12229711 intron aret + chr2L_11_12225001 chr2L_12225001 RAL-340_100b 456 chr2L 12254005 12254029 chr2L 12254122 12254146 9 117 14.5 0.5 7.5 1.1 141 chr2L 12254005 intron aret + chr2L 12254076 intron aret + chr2L 12254146 intron aret + chr2L_9_12250001 chr2L_12250001 RAL-340_100b 457 chr2L 12269827 12269836 chr2L 12270067 12270076 4 240 13.5 11.0 12.2 0.3 249 chr2L 12269827 intron aret + chr2L 12269952 intron aret + chr2L 12270076 intron aret + chr2L_4_12265001 chr2L_12265001 RAL-340_100b 458 chr2L 12272137 12272195 chr2L 12272240 12272296 11 96 0.5 7.0 3.8 2.3 159 chr2L 12272137 intron aret + chr2L 12272216 intron aret + chr2L 12272296 intron aret + chr2L_11_12270001 chr2L_12270001 RAL-340_100b 459 chr2L 12305384 12305437 chr2L 12305497 12305550 40 110 14.0 7.0 10.5 3.5 166 chr2L 12305384 intron aret + chr2L 12305467 intron aret + chr2L 12305550 intron aret + chr2L_40_12305001 chr2L_12305001 RAL-340_100b 460 chr2L 12366836 12366891 chr2L 12366947 12366996 15 109 4.5 8.0 6.2 2.1 160 chr2L 12366836 intron bru-2 + chr2L 12366916 intron bru-2 + chr2L 12366996 intron bru-2 + chr2L_15_12365001 chr2L_12365001 RAL-340_100b 461 chr2L 12410983 12411019 chr2L 12411087 12411123 7 101 10.5 0.0 5.2 1.1 140 chr2L 12410983 intron vir-1 - chr2L 12411053 intron vir-1 - chr2L 12411123 intron vir-1 - chr2L_7_12410001 chr2L_12410001 RAL-340_100b 462 chr2L 12411020 12411030 chr2L 12411084 12411126 7 91 7.5 0.5 4.0 1.4 106 chr2L 12411020 intron vir-1 - chr2L 12411073 intron vir-1 - chr2L 12411126 intron vir-1 - chr2L_7_12410001 chr2L_12410001 RAL-340_100b 463 chr2L 12424344 12424380 chr2L 12424445 12424481 8 97 0.5 3.5 2.0 2.7 137 chr2L 12424344 intergenic not near genes chr2L 12424412 intergenic CG6405 + chr2L 12424481 intergenic CG6405 + chr2L_8_12420001 chr2L_12420001 RAL-340_100b 464 chr2L 12444763 12444819 chr2L 12444870 12444925 13 104 7.5 3.0 5.2 2.1 162 chr2L 12444763 intron Oatp33Ea - chr2L 12444844 intron Oatp33Ea - chr2L 12444925 intron Oatp33Ea - chr2L_13_12440001 chr2L_12440001 RAL-340_100b 465 chr2L 12487877 12487918 chr2L 12487967 12488024 17 100 8.0 10.0 9.0 1.7 147 chr2L 12487877 intron bun - chr2L 12487950 intron bun - chr2L 12488024 intron bun - chr2L_17_12485001 chr2L_12485001 RAL-340_100b 466 chr2L 12500706 12500710 chr2L 12500814 12500821 8 110 53.0 8.0 30.5 0.3 115 chr2L 12500706 intron bun - chr2L 12500764 intron bun - chr2L 12500821 intron bun - chr2L_8_12500001 chr2L_12500001 RAL-340_100b 467 chr2L 12500712 12500713 chr2L 12500813 12500823 4 108 52.5 8.0 30.2 0.1 111 chr2L 12500712 intron bun - chr2L 12500768 intron bun - chr2L 12500823 intron bun - chr2L_4_12500001 chr2L_12500001 RAL-340_100b 468 chr2L 12500716 12500756 chr2L 12500807 12500847 35 100 22.0 7.5 14.8 2.2 131 chr2L 12500716 intron bun - chr2L 12500782 intron bun - chr2L 12500847 intron bun - chr2L_35_12500001 chr2L_12500001 RAL-340_100b 469 chr2L 12529229 12529428 chr2L 12529377 12529529 21 137 1.5 1.0 1.2 9.5 300 chr2L 12529229 intron bun - chr2L 12529379 intron bun - chr2L 12529529 intron bun - chr2L_21_12525001 chr2L_12525001 RAL-340_100b 470 chr2L 12558304 12558350 chr2L 12565458 12565504 HMS-Beagle 22 7152 4.5 8.5 6.5 2.9 7200 chr2L 12558304 intergenic not near genes chr2L 12561904 intergenic not near genes chr2L 12565504 intergenic not near genes chr2L_22_12560001 chr2L_12560001 RAL-340_100b 471 chr2L 12572495 12572525 chr2L 12572575 12572622 15 100 19.0 10.0 14.5 1.0 127 chr2L 12572495 intergenic not near genes chr2L 12572558 intergenic not near genes chr2L 12572622 intergenic not near genes chr2L_15_12570001 chr2L_12570001 RAL-340_100b 472 chr2L 12619882 12619899 chr2L 12619983 12620000 8 99 16.0 10.0 13.0 0.6 118 chr2L 12619882 intron,intron nub +,Ref2 - chr2L 12619941 intron,intron nub +,Ref2 - chr2L 12620000 intron,intron nub +,Ref2 - chr2L_8_12615001 chr2L_12615001 RAL-340_100b 473 chr2L 12656176 12656197 chr2L 12656327 12656348 5 151 34.5 19.5 27.0 0.2 172 chr2L 12656176 intergenic not near genes chr2L 12656262 intergenic not near genes chr2L 12656348 intergenic not near genes chr2L_5_12655001 chr2L_12655001 RAL-340_100b 474 chr2L 12693821 12693827 chr2L 12693918 12693921 8 98 16.5 4.0 10.2 0.7 100 chr2L 12693821 exon CG6153 + chr2L 12693871 3` UTR,3` UTR CG6153 +,CG5780 - chr2L 12693921 3` UTR,3` UTR CG6153 +,CG5780 - chr2L_8_12690001 chr2L_12690001 RAL-340_100b 475 chr2L 12693834 12693867 chr2L 12693917 12693922 17 94 6.0 3.5 4.8 2.9 88 chr2L 12693834 exon CG6153 + chr2L 12693878 3` UTR,3` UTR CG6153 +,CG5780 - chr2L 12693922 3` UTR,3` UTR CG6153 +,CG5780 - chr2L_17_12690001 chr2L_12690001 RAL-340_100b 476 chr2L 12728896 12728949 chr2L 12729163 12729175 pogo 22 264 7.5 5.5 6.5 2.9 279 chr2L 12728896 intron MRP + chr2L 12729036 intron MRP + chr2L 12729175 intron MRP + chr2L_22_12725001 chr2L_12725001 RAL-340_100b 477 chr2L 12731035 12731089 chr2L 12735827 12735860 F-element 20 4789 7.0 14.0 10.5 1.7 4825 chr2L 12731035 intron MRP + chr2L 12733448 intron MRP + chr2L 12735860 intron MRP + chr2L_20_12730001 chr2L_12730001 RAL-340_100b 478 chr2L 12739153 12739190 chr2L 12743959 12743996 Doc 22 4804 15.5 19.0 17.2 1.2 4843 chr2L 12739153 exon MRP + chr2L 12741574 intron MRP + chr2L 12743996 exon MRP + chr2L_22_12740001 chr2L_12740001 RAL-340_100b 479 chr2L 12763813 12763864 chr2L 12764038 12764089 BS 5 229 0.0 1.5 0.8 2.8 276 chr2L 12763813 intergenic not near genes chr2L 12763951 intergenic not near genes chr2L 12764089 intergenic not near genes chr2L_5_12760001 chr2L_12760001 RAL-340_100b 480 chr2L 12781780 12781815 chr2L 12789255 12789289 Quasimodo 11 7471 11.5 14.0 12.8 0.8 7509 chr2L 12781780 intergenic not near genes chr2L 12785534 intergenic not near genes chr2L 12789289 intergenic not near genes chr2L_11_12785001 chr2L_12785001 RAL-340_100b 481 chr2L 12791585 12791627 chr2L 12795285 12795327 F-element 11 3689 4.0 12.5 8.2 1.2 3742 chr2L 12791585 intergenic not near genes chr2L 12793456 intergenic not near genes chr2L 12795327 intergenic not near genes chr2L_11_12790001 chr2L_12790001 RAL-340_100b 482 chr2L 12791628 12791634 chr2L 12795277 12795278 F-element 4 3662 4.0 10.0 7.0 0.5 3650 chr2L 12791628 intergenic not near genes chr2L 12793453 intergenic not near genes chr2L 12795278 intergenic not near genes chr2L_4_12790001 chr2L_12790001 RAL-340_100b 483 chr2L 12807419 12807454 chr2L 12807526 12807561 14 105 1.5 9.5 5.5 2.2 142 chr2L 12807419 intergenic CR43818 - chr2L 12807490 intergenic CR43818 - chr2L 12807561 intergenic CR43818 - chr2L_14_12805001 chr2L_12805001 RAL-340_100b 484 chr2L 12807457 12807463 chr2L 12807519 12807569 6 98 1.0 7.5 4.2 1.2 112 chr2L 12807457 intergenic CR43818 - chr2L 12807513 intergenic CR43818 - chr2L 12807569 intergenic CR43818 - chr2L_6_12805001 chr2L_12805001 RAL-340_100b 485 chr2L 12835529 12835582 chr2L 12835663 12835716 9 132 4.0 1.5 2.8 2.4 187 chr2L 12835529 intergenic not near genes chr2L 12835622 intergenic not near genes chr2L 12835716 intergenic not near genes chr2L_9_12835001 chr2L_12835001 RAL-340_100b 486 chr2L 12861671 12861693 chr2L 12863163 12863185 hobo 17 1491 33.0 6.5 19.8 0.8 1514 chr2L 12861671 intergenic not near genes chr2L 12862428 intergenic not near genes chr2L 12863185 intergenic not near genes chr2L_17_12860001 chr2L_12860001 RAL-340_100b 487 chr2L 12861694 12861729 chr2L 12863160 12863182 hobo 24 1474 12.5 6.5 9.5 2.3 1488 chr2L 12861694 intergenic not near genes chr2L 12862438 intergenic not near genes chr2L 12863182 intergenic not near genes chr2L_24_12860001 chr2L_12860001 RAL-340_100b 488 chr2L 12894012 12894049 chr2L 12895486 12895537 hobo 17 1478 11.5 11.5 11.5 1.4 1525 chr2L 12894012 intergenic not near genes chr2L 12894774 intergenic not near genes chr2L 12895537 intergenic not near genes chr2L_17_12890001 chr2L_12890001 RAL-340_100b 489 chr2L 12933828 12933879 chr2L 12941320 12941371 blood 22 7488 13.0 11.0 12.0 1.7 7543 chr2L 12933828 intergenic not near genes chr2L 12937600 intergenic not near genes chr2L 12941371 intergenic not near genes chr2L_22_12935001 chr2L_12935001 RAL-340_100b 490 chr2L 12955996 12956060 chr2L 12956102 12956139 51 101 16.5 14.5 15.5 3.1 143 chr2L 12955996 intergenic not near genes chr2L 12956068 intergenic not near genes chr2L 12956139 intergenic not near genes chr2L_51_12955001 chr2L_12955001 RAL-340_100b 491 chr2L 13036229 13036270 chr2L 13036490 13036537 X-element 17 265 8.0 5.5 6.8 2.2 308 chr2L 13036229 intron CG9932 - chr2L 13036383 intron CG9932 - chr2L 13036537 intron CG9932 - chr2L_17_13035001 chr2L_13035001 RAL-340_100b 492 chr2L 13038383 13038421 chr2L 13038492 13038530 8 109 9.5 7.0 8.2 0.9 147 chr2L 13038383 intron CG9932 - chr2L 13038456 intron CG9932 - chr2L 13038530 intron CG9932 - chr2L_8_13035001 chr2L_13035001 RAL-340_100b 493 chr2L 13045320 13045376 chr2L 13045430 13045486 27 106 9.0 5.5 7.2 3.3 166 chr2L 13045320 intron CG9932 - chr2L 13045403 intron CG9932 - chr2L 13045486 intron CG9932 - chr2L_27_13045001 chr2L_13045001 RAL-340_100b 494 chr2L 13076798 13076819 chr2L 13076912 13076933 4 112 8.5 2.5 5.5 0.6 135 chr2L 13076798 intergenic not near genes chr2L 13076866 intergenic not near genes chr2L 13076933 intergenic not near genes chr2L_4_13075001 chr2L_13075001 RAL-340_100b 495 chr2L 13076827 13076857 chr2L 13076911 13076918 13 95 3.5 2.5 3.0 3.2 91 chr2L 13076827 intergenic not near genes chr2L 13076872 intergenic not near genes chr2L 13076918 intergenic not near genes chr2L_13_13075001 chr2L_13075001 RAL-340_100b 496 chr2L 13081433 13081470 chr2L 13081589 13081646 16 162 8.0 12.0 10.0 1.5 213 chr2L 13081433 intergenic not near genes chr2L 13081540 intergenic not near genes chr2L 13081646 intergenic not near genes chr2L_16_13080001 chr2L_13080001 RAL-340_100b 497 chr2L 13150422 13150473 chr2L 13150603 13150653 12 178 3.0 9.5 6.2 1.7 231 chr2L 13150422 intergenic not near genes chr2L 13150538 intergenic not near genes chr2L 13150653 intergenic not near genes chr2L_12_13150001 chr2L_13150001 RAL-340_100b 498 chr2L 13204289 13204309 chr2L 13204413 13204433 5 124 10.5 13.5 12.0 0.4 144 chr2L 13204289 intron Pect + chr2L 13204361 intron Pect + chr2L 13204433 intron Pect + chr2L_5_13200001 chr2L_13200001 RAL-340_100b 499 chr2L 13211178 13211224 chr2L 13211584 13211595 4 400 3.5 7.0 5.2 0.6 417 chr2L 13211178 exon CG15482 - chr2L 13211386 exon CG15482 - chr2L 13211595 exon CG15482 - chr2L_4_13210001 chr2L_13210001 RAL-340_100b 500 chr2L 13266353 13266412 chr2L 13266466 13266525 36 111 4.0 11.0 7.5 4.2 172 chr2L 13266353 intron CG44085 + chr2L 13266439 intron CG44085 + chr2L 13266525 intron CG44085 + chr2L_36_13265001 chr2L_13265001 RAL-340_100b 501 chr2L 13405624 13405673 chr2L 13410446 13410495 Doc 24 4819 7.0 13.5 10.2 2.1 4871 chr2L 13405624 exon CG7110 + chr2L 13408060 intron CG7110 + chr2L 13410495 intron CG7110 + chr2L_24_13405001 chr2L_13405001 RAL-340_100b 502 chr2L 13449447 13449495 chr2L 13456897 13456956 Quasimodo 13 7459 5.0 6.0 5.5 2.0 7509 chr2L 13449447 intron,5` UTR CG42784 +,Hsp60D - chr2L 13453202 intron CG42784 + chr2L 13456956 intron CG42784 + chr2L_13_13450001 chr2L_13450001 RAL-340_100b 503 chr2L 13481435 13481469 chr2L 13482067 13482101 jockey 13 630 8.5 16.0 12.2 1.0 666 chr2L 13481435 intron CG42784 + chr2L 13481768 intron CG42784 + chr2L 13482101 intron CG42784 + chr2L_13_13480001 chr2L_13480001 RAL-340_100b 504 chr2L 13515358 13515368 chr2L 13515457 13515470 6 101 12.0 10.0 11.0 0.5 112 chr2L 13515358 intron B4 - chr2L 13515414 intron B4 - chr2L 13515470 intron B4 - chr2L_6_13515001 chr2L_13515001 RAL-340_100b 505 chr2L 13522258 13522283 chr2L 13527589 13527608 Transpac 11 5328 27.5 32.0 29.8 0.4 5350 chr2L 13522258 intron B4 - chr2L 13524933 intron B4 - chr2L 13527608 intron B4 - chr2L_11_13520001 chr2L_13520001 RAL-340_100b 506 chr2L 13560378 13560419 chr2L 13565224 13565265 F-element 24 4845 9.5 7.5 8.5 2.5 4887 chr2L 13560378 intron kuz + chr2L 13562822 intron kuz + chr2L 13565265 intron kuz + chr2L_24_13560001 chr2L_13560001 RAL-340_100b 507 chr2L 13620082 13620120 chr2L 13620333 13620371 11 249 13.5 9.0 11.2 0.9 289 chr2L 13620082 intron kuz + chr2L 13620226 intron kuz + chr2L 13620371 intron kuz + chr2L_11_13620001 chr2L_13620001 RAL-340_100b 508 chr2L 13620130 13620139 chr2L 13620371 13620390 5 245 6.0 21.5 13.8 0.3 260 chr2L 13620130 intron kuz + chr2L 13620260 intron kuz + chr2L 13620390 intron kuz + chr2L_5_13620001 chr2L_13620001 RAL-340_100b 509 chr2L 13622124 13622171 chr2L 13622233 13622269 22 113 8.5 1.0 4.8 3.8 145 chr2L 13622124 intron kuz + chr2L 13622196 intron kuz + chr2L 13622269 intron kuz + chr2L_22_13620001 chr2L_13620001 RAL-340_100b 510 chr2L 13676356 13676401 chr2L 13676457 13676502 15 96 5.5 12.0 8.8 1.5 146 chr2L 13676356 intergenic not near genes chr2L 13676429 intergenic CG31814 - chr2L 13676502 intergenic CG31814 - chr2L_15_13675001 chr2L_13675001 RAL-340_100b 511 chr2L 13692982 13693025 chr2L 13693083 13693126 15 96 11.5 7.0 9.2 1.5 144 chr2L 13692982 intron CG31814 - chr2L 13693054 intron CG31814 - chr2L 13693126 intron CG31814 - chr2L_15_13690001 chr2L_13690001 RAL-340_100b 512 chr2L 13693031 13693038 chr2L 13693116 13693139 4 97 7.5 17.5 12.5 0.3 108 chr2L 13693031 intron CG31814 - chr2L 13693085 intron CG31814 - chr2L 13693139 intron CG31814 - chr2L_4_13690001 chr2L_13690001 RAL-340_100b 513 chr2L 13710949 13710993 chr2L 13711217 13711261 13 263 7.0 13.5 10.2 1.2 312 chr2L 13710949 intron CG31814 - chr2L 13711105 intron CG31814 - chr2L 13711261 intron CG31814 - chr2L_13_13710001 chr2L_13710001 RAL-340_100b 514 chr2L 13710996 13711005 chr2L 13711216 13711273 7 250 4.5 13.5 9.0 0.7 277 chr2L 13710996 intron CG31814 - chr2L 13711134 intron CG31814 - chr2L 13711273 intron CG31814 - chr2L_7_13710001 chr2L_13710001 RAL-340_100b 515 chr2L 13713106 13713131 chr2L 13713288 13713313 10 182 11.0 6.0 8.5 1.1 207 chr2L 13713106 intron CG31814 - chr2L 13713210 intron CG31814 - chr2L 13713313 intron CG31814 - chr2L_10_13710001 chr2L_13710001 RAL-340_100b 516 chr2L 13713537 13713550 chr2L 13713638 13713651 6 101 16.5 5.0 10.8 0.5 114 chr2L 13713537 intron CG31814 - chr2L 13713594 intron CG31814 - chr2L 13713651 intron CG31814 - chr2L_6_13710001 chr2L_13710001 RAL-340_100b 517 chr2L 13713557 13713574 chr2L 13713637 13713665 8 95 12.5 4.5 8.5 0.8 108 chr2L 13713557 intron CG31814 - chr2L 13713611 intron CG31814 - chr2L 13713665 intron CG31814 - chr2L_8_13710001 chr2L_13710001 RAL-340_100b 518 chr2L 13761784 13761838 chr2L 13762920 13762923 Doc 31 1133 12.0 14.5 13.2 2.2 1139 chr2L 13761784 intron TM9SF4 + chr2L 13762354 intron TM9SF4 + chr2L 13762923 intron TM9SF4 + chr2L_31_13760001 chr2L_13760001 RAL-340_100b 519 chr2L 13842552 13842566 chr2L 13842654 13842668 5 102 10.0 7.0 8.5 0.5 116 chr2L 13842552 intron CenG1A + chr2L 13842610 intron CenG1A + chr2L 13842668 intron CenG1A + chr2L_5_13840001 chr2L_13840001 RAL-340_100b 520 chr2L 13842569 13842593 chr2L 13842651 13842695 7 93 5.0 5.5 5.2 1.1 126 chr2L 13842569 intron CenG1A + chr2L 13842632 intron CenG1A + chr2L 13842695 intron CenG1A + chr2L_7_13840001 chr2L_13840001 RAL-340_100b 521 chr2L 13853070 13853114 chr2L 13862239 13862275 roo 16 9173 8.5 8.5 8.5 1.7 9205 chr2L 13853070 intron CenG1A + chr2L 13857672 intron CenG1A + chr2L 13862275 intron CenG1A + chr2L_16_13855001 chr2L_13855001 RAL-340_100b 522 chr2L 13952136 13952149 chr2L 13952243 13952256 4 107 18.5 4.0 11.2 0.3 120 chr2L 13952136 intron Ance-3 + chr2L 13952196 intron Ance-3 + chr2L 13952256 intron Ance-3 + chr2L_4_13950001 chr2L_13950001 RAL-340_100b 523 chr2L 14068574 14068583 chr2L 14068694 14068696 7 119 15.0 0.5 7.8 0.8 122 chr2L 14068574 intron nAChRalpha5 + chr2L 14068635 intron nAChRalpha5 + chr2L 14068696 intron nAChRalpha5 + chr2L_7_14065001 chr2L_14065001 RAL-340_100b 524 chr2L 14068602 14068623 chr2L 14068690 14068698 5 98 6.0 0.5 3.2 1.2 96 chr2L 14068602 intron nAChRalpha5 + chr2L 14068650 intron nAChRalpha5 + chr2L 14068698 intron nAChRalpha5 + chr2L_5_14065001 chr2L_14065001 RAL-340_100b 525 chr2L 14160667 14160715 chr2L 14160773 14160826 19 107 4.0 8.0 6.0 2.7 159 chr2L 14160667 intergenic CG17341 +,CG43332 - chr2L 14160746 intergenic CG17341 +,CG43332 - chr2L 14160826 intergenic CG17341 +,CG43332 - chr2L_19_14160001 chr2L_14160001 RAL-340_100b 526 chr2L 14162126 14162140 chr2L 14162255 14162269 11 130 9.0 35.5 22.2 0.5 143 chr2L 14162126 exon CG43332 - chr2L 14162198 exon CG43332 - chr2L 14162269 exon CG43332 - chr2L_11_14160001 chr2L_14160001 RAL-340_100b 527 chr2L 14180037 14180083 chr2L 14180138 14180184 14 100 5.0 5.5 5.2 2.3 147 chr2L 14180037 intron CG43333 - chr2L 14180110 intron CG43333 - chr2L 14180184 intron CG43333 - chr2L_14_14180001 chr2L_14180001 RAL-340_100b 528 chr2L 14335612 14335627 chr2L 14337033 14337042 4 1417 21.0 6.5 13.8 0.3 1430 chr2L 14335612 intron CG33090 + chr2L 14336327 intron CG33090 + chr2L 14337042 intron CG33090 + chr2L_4_14335001 chr2L_14335001 RAL-340_100b 529 chr2L 14335642 14335665 chr2L 14337042 14337081 8 1415 9.5 6.5 8.0 0.9 1439 chr2L 14335642 intron CG33090 + chr2L 14336362 intron CG33090 + chr2L 14337081 intron CG33090 + chr2L_8_14335001 chr2L_14335001 RAL-340_100b 530 chr2L 14340498 14340562 chr2L 14340605 14340633 19 100 1.5 5.0 3.2 4.5 135 chr2L 14340498 intron CG33090 + chr2L 14340566 intron CG33090 + chr2L 14340633 intron CG33090 + chr2L_19_14340001 chr2L_14340001 RAL-340_100b 531 chr2L 14367327 14367390 chr2L 14367430 14367437 7 96 2.5 0.0 1.2 3.2 110 chr2L 14367327 intergenic spel1 + chr2L 14367382 intergenic not near genes chr2L 14367437 intergenic not near genes chr2L_7_14365001 chr2L_14365001 RAL-340_100b 532 chr2L 14367838 14367873 chr2L 14367943 14367972 19 103 11.5 9.5 10.5 1.7 134 chr2L 14367838 intergenic not near genes chr2L 14367905 intergenic not near genes chr2L 14367972 intergenic not near genes chr2L_19_14365001 chr2L_14365001 RAL-340_100b 533 chr2L 14378625 14378674 chr2L 14378729 14378765 20 102 7.0 0.0 3.5 4.4 140 chr2L 14378625 3` UTR ppk - chr2L 14378695 3` UTR ppk - chr2L 14378765 3` UTR ppk - chr2L_20_14375001 chr2L_14375001 RAL-340_100b 534 chr2L 14413236 14413242 chr2L 14413343 14413349 4 107 21.5 9.5 15.5 0.2 113 chr2L 14413236 intergenic not near genes chr2L 14413292 intergenic not near genes chr2L 14413349 intergenic not near genes chr2L_4_14410001 chr2L_14410001 RAL-340_100b 535 chr2L 14413250 14413287 chr2L 14413336 14413381 13 97 7.0 8.0 7.5 1.5 131 chr2L 14413250 intergenic not near genes chr2L 14413316 intergenic not near genes chr2L 14413381 intergenic not near genes chr2L_13_14410001 chr2L_14410001 RAL-340_100b 536 chr2L 14564190 14564226 chr2L 14564271 14564327 10 92 5.5 7.5 6.5 1.3 137 chr2L 14564190 intergenic CG3473 - chr2L 14564258 intergenic not near genes chr2L 14564327 intergenic not near genes chr2L_10_14560001 chr2L_14560001 RAL-340_100b 537 chr2L 14565844 14565902 chr2L 14565952 14565997 19 101 10.5 3.0 6.8 2.4 153 chr2L 14565844 intergenic not near genes chr2L 14565920 intergenic not near genes chr2L 14565997 intergenic not near genes chr2L_19_14565001 chr2L_14565001 RAL-340_100b 538 chr2L 14570696 14570721 chr2L 14570802 14570827 10 106 0.5 2.0 1.2 4.5 131 chr2L 14570696 intergenic not near genes chr2L 14570762 intergenic not near genes chr2L 14570827 intergenic not near genes chr2L_10_14570001 chr2L_14570001 RAL-340_100b 539 chr2L 14588360 14588420 chr2L 14588539 14588564 37 168 10.5 10.5 10.5 3.2 204 chr2L 14588360 intergenic CG42680 - chr2L 14588462 intergenic CG42680 - chr2L 14588564 intergenic CG42680 - chr2L_37_14585001 chr2L_14585001 RAL-340_100b 540 chr2L 14601541 14601576 chr2L 16217660 16217660 4 1616100 89.0 70.5 79.8 0.0 1616119 chr2L 14601541 intron osp - chr2L 15409600 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_4_15405001 chr2L_15405001 RAL-340_100b 541 chr2L 14689332 14689382 chr2L 14689486 14689536 17 153 10.5 4.5 7.5 2.0 204 chr2L 14689332 5` UTR osp - chr2L 14689434 intergenic osp - chr2L 14689536 intergenic osp - chr2L_17_14685001 chr2L_14685001 RAL-340_100b 542 chr2L 14707188 14707229 chr2L 14707332 14707373 9 143 15.0 0.0 7.5 1.1 185 chr2L 14707188 intergenic not near genes chr2L 14707280 intergenic not near genes chr2L 14707373 intergenic not near genes chr2L_9_14705001 chr2L_14705001 RAL-340_100b 543 chr2L 14715516 14715564 chr2L 14715628 14715680 21 113 5.5 9.0 7.2 2.6 164 chr2L 14715516 intergenic not near genes chr2L 14715598 intergenic not near genes chr2L 14715680 intergenic not near genes chr2L_21_14715001 chr2L_14715001 RAL-340_100b 544 chr2L 14803854 14803909 chr2L 14809082 14809137 copia 37 5225 8.5 7.0 7.8 4.2 5283 chr2L 14803854 intergenic not near genes chr2L 14806496 intergenic not near genes chr2L 14809137 intergenic not near genes chr2L_37_14805001 chr2L_14805001 RAL-340_100b 545 chr2L 14819197 14819215 chr2L 14819308 14819326 4 110 12.5 28.0 20.2 0.2 129 chr2L 14819197 intergenic not near genes chr2L 14819262 intergenic not near genes chr2L 14819326 intergenic not near genes chr2L_4_14815001 chr2L_14815001 RAL-340_100b 546 chr2L 14923089 14923113 chr2L 14923194 14923218 14 104 7.0 10.0 8.5 1.5 129 chr2L 14923089 intron CG42313 - chr2L 14923154 intron CG42313 - chr2L 14923218 intron CG42313 - chr2L_14_14920001 chr2L_14920001 RAL-340_100b 547 chr2L 14984356 14984372 chr2L 14991983 14991993 opus 6 7626 20.0 21.5 20.8 0.3 7637 chr2L 14984356 intron mol - chr2L 14988174 intron mol - chr2L 14991993 intron mol - chr2L_6_14985001 chr2L_14985001 RAL-340_100b 548 chr2L 15013128 15013181 chr2L 15013257 15013311 15 124 4.0 9.0 6.5 2.0 183 chr2L 15013128 intergenic CR43856 - chr2L 15013220 intergenic not near genes chr2L 15013311 intergenic not near genes chr2L_15_15010001 chr2L_15010001 RAL-340_100b 549 chr2L 15014600 15014652 chr2L 15014704 15014751 5 95 0.5 8.0 4.2 1.0 151 chr2L 15014600 intergenic not near genes chr2L 15014676 intergenic not near genes chr2L 15014751 intergenic not near genes chr2L_5_15010001 chr2L_15010001 RAL-340_100b 550 chr2L 15044529 15044583 chr2L 15044783 15044834 9 246 7.0 4.5 5.8 1.3 305 chr2L 15044529 intergenic ck - chr2L 15044682 intergenic ck - chr2L 15044834 intergenic ck - chr2L_9_15040001 chr2L_15040001 RAL-340_100b 551 chr2L 15061757 15061810 chr2L 15064068 15064100 10 2298 27.5 64.0 45.8 0.2 2343 chr2L 15061757 intron vas + chr2L 15062928 intron vas + chr2L 15064100 intron,3` UTR vas +,vig - chr2L_10_15060001 chr2L_15060001 RAL-340_100b 552 chr2L 15077369 15077426 chr2L 15077484 15077541 32 113 5.0 11.0 8.0 3.6 172 chr2L 15077369 intron CG15270 + chr2L 15077455 intron CG15270 + chr2L 15077541 intron CG15270 + chr2L_32_15075001 chr2L_15075001 RAL-340_100b 553 chr2L 15079098 15079124 chr2L 15079183 15079239 9 104 6.5 6.5 6.5 1.2 141 chr2L 15079098 intron CG15270 + chr2L 15079168 intron CG15270 + chr2L 15079239 intron CG15270 + chr2L_9_15075001 chr2L_15075001 RAL-340_100b 554 chr2L 15098515 15098542 chr2L 15098619 15098647 19 102 14.0 8.5 11.2 1.6 132 chr2L 15098515 intergenic not near genes chr2L 15098581 intergenic not near genes chr2L 15098647 intergenic not near genes chr2L_19_15095001 chr2L_15095001 RAL-340_100b 555 chr2L 15099925 15099945 chr2L 15100037 15100041 5 109 5.5 0.5 3.0 1.2 116 chr2L 15099925 intergenic not near genes chr2L 15099983 intergenic not near genes chr2L 15100041 intergenic not near genes chr2L_5_15095001 chr2L_15095001 RAL-340_100b 556 chr2L 15103855 15103866 chr2L 15103952 15103955 4 106 4.0 9.5 6.8 0.5 100 chr2L 15103855 intergenic not near genes chr2L 15103905 intergenic not near genes chr2L 15103955 intergenic not near genes chr2L_4_15100001 chr2L_15100001 RAL-340_100b 557 chr2L 15122565 15122802 chr2L 15122686 15122896 35 101 6.5 5.0 5.8 5.1 331 chr2L 15122565 intergenic not near genes chr2L 15122730 intergenic not near genes chr2L 15122896 intergenic not near genes chr2L_35_15120001 chr2L_15120001 RAL-340_100b 558 chr2L 15142019 15142063 chr2L 15142123 15142162 10 102 6.0 6.0 6.0 1.4 143 chr2L 15142019 intergenic not near genes chr2L 15142090 intergenic not near genes chr2L 15142162 intergenic not near genes chr2L_10_15140001 chr2L_15140001 RAL-340_100b 559 chr2L 15155806 15155846 chr2L 15155918 15155931 14 113 14.5 7.0 10.8 1.2 125 chr2L 15155806 intergenic not near genes chr2L 15155868 intergenic not near genes chr2L 15155931 intergenic not near genes chr2L_14_15155001 chr2L_15155001 RAL-340_100b 560 chr2L 15195364 15195415 chr2L 15195486 15195544 21 126 4.5 17.0 10.8 1.8 180 chr2L 15195364 intron CG4168 - chr2L 15195454 intron CG4168 - chr2L 15195544 intron CG4168 - chr2L_21_15195001 chr2L_15195001 RAL-340_100b 561 chr2L 15216097 15216113 chr2L 15216236 15216252 7 139 9.5 1.5 5.5 1.1 155 chr2L 15216097 3` UTR CG43230 + chr2L 15216174 intergenic CG43230 + chr2L 15216252 intergenic CG43230 + chr2L_7_15215001 chr2L_15215001 RAL-340_100b 562 chr2L 15375804 15375826 chr2L 15375941 15375963 7 134 5.5 9.5 7.5 0.8 159 chr2L 15375804 intergenic not near genes chr2L 15375884 intergenic not near genes chr2L 15375963 intergenic not near genes chr2L_7_15375001 chr2L_15375001 RAL-340_100b 563 chr2L 15394153 15394179 chr2L 15394268 15394294 6 115 8.5 0.0 4.2 1.2 141 chr2L 15394153 intergenic not near genes chr2L 15394224 intergenic not near genes chr2L 15394294 intergenic not near genes chr2L_6_15390001 chr2L_15390001 RAL-340_100b 564 chr2L 15446025 15446072 chr2L 15453519 15453566 blood 13 7493 6.5 2.0 4.2 2.5 7541 chr2L 15446025 intergenic not near genes chr2L 15449796 intergenic not near genes chr2L 15453566 intergenic not near genes chr2L_13_15445001 chr2L_15445001 RAL-340_100b 565 chr2L 15550070 15550104 chr2L 15550187 15550216 16 108 14.0 18.0 16.0 0.9 146 chr2L 15550070 5` UTR CR45728 + chr2L 15550143 5` UTR CR45728 + chr2L 15550216 5` UTR CR45728 + chr2L_16_15550001 chr2L_15550001 RAL-340_100b 566 chr2L 15550106 15550118 chr2L 15550186 15550231 10 92 10.0 18.0 14.0 0.7 125 chr2L 15550106 5` UTR CR45728 + chr2L 15550168 5` UTR CR45728 + chr2L 15550231 5` UTR CR45728 + chr2L_10_15550001 chr2L_15550001 RAL-340_100b 567 chr2L 15586386 15586438 chr2L 15593463 15593515 297 14 7074 3.0 11.5 7.2 1.7 7129 chr2L 15586386 intergenic not near genes chr2L 15589950 intergenic not near genes chr2L 15593515 intergenic not near genes chr2L_14_15585001 chr2L_15585001 RAL-340_100b 568 chr2L 15636651 15636689 chr2L 15636752 15636760 11 95 3.5 0.0 1.8 3.9 109 chr2L 15636651 intergenic not near genes chr2L 15636706 intergenic not near genes chr2L 15636760 intergenic not near genes chr2L_11_15635001 chr2L_15635001 RAL-340_100b 569 chr2L 15749990 15750017 chr2L 15750128 15750129 5 133 7.5 0.0 3.8 1.0 139 chr2L 15749990 intron l(2)35Di - chr2L 15750060 intron l(2)35Di - chr2L 15750129 intron l(2)35Di - chr2L_5_15750001 chr2L_15750001 RAL-340_100b 570 chr2L 15826869 15826892 chr2L 15829288 15829311 Tabor 14 2419 1.5 10.5 6.0 2.0 2442 chr2L 15826869 intergenic not near genes chr2L 15828090 intergenic not near genes chr2L 15829311 intergenic not near genes chr2L_14_15825001 chr2L_15825001 RAL-340_100b 571 chr2L 15906161 15906181 chr2L 15906271 15906295 9 113 6.0 5.5 5.8 1.3 134 chr2L 15906161 intron beat-Ib - chr2L 15906228 intron beat-Ib - chr2L 15906295 intron beat-Ib - chr2L_9_15905001 chr2L_15905001 RAL-340_100b 572 chr2L 15906182 15906210 chr2L 15906270 15906298 11 102 2.5 5.5 4.0 2.2 116 chr2L 15906182 intron beat-Ib - chr2L 15906240 intron beat-Ib - chr2L 15906298 intron beat-Ib - chr2L_11_15905001 chr2L_15905001 RAL-340_100b 573 chr2L 15935170 15935216 chr2L 15935284 15935331 12 113 2.0 5.0 3.5 2.7 161 chr2L 15935170 intron beat-Ib - chr2L 15935250 intron beat-Ib - chr2L 15935331 intron beat-Ib - chr2L_12_15935001 chr2L_15935001 RAL-340_100b 574 chr2L 15956007 15956048 chr2L 15957496 15957519 hobo 8 1481 8.5 9.5 9.0 0.8 1512 chr2L 15956007 intron beat-Ib - chr2L 15956763 intron beat-Ib - chr2L 15957519 intron beat-Ib - chr2L_8_15955001 chr2L_15955001 RAL-340_100b 575 chr2L 15967623 15967668 chr2L 15967732 15967777 19 107 9.0 5.5 7.2 2.3 154 chr2L 15967623 intergenic not near genes chr2L 15967700 intergenic not near genes chr2L 15967777 intergenic not near genes chr2L_19_15965001 chr2L_15965001 RAL-340_100b 576 chr2L 15991334 15991368 chr2L 15991435 15991469 21 98 6.0 7.5 6.8 2.7 135 chr2L 15991334 intergenic not near genes chr2L 15991402 intergenic not near genes chr2L 15991469 intergenic not near genes chr2L_21_15990001 chr2L_15990001 RAL-340_100b 577 chr2L 15991370 15991385 chr2L 15991434 15991486 9 89 5.0 7.5 6.2 1.2 116 chr2L 15991370 intergenic not near genes chr2L 15991428 intergenic not near genes chr2L 15991486 intergenic not near genes chr2L_9_15990001 chr2L_15990001 RAL-340_100b 578 chr2L 16008670 16008719 chr2L 16008773 16008822 9 102 4.5 2.5 3.5 2.0 152 chr2L 16008670 intron beat-Ic + chr2L 16008746 intron beat-Ic + chr2L 16008822 intron beat-Ic + chr2L_9_16005001 chr2L_16005001 RAL-340_100b 579 chr2L 16027397 16027406 chr2L 16027498 16027507 4 101 6.5 12.0 9.2 0.4 110 chr2L 16027397 intron beat-Ic + chr2L 16027452 intron beat-Ic + chr2L 16027507 intron beat-Ic + chr2L_4_16025001 chr2L_16025001 RAL-340_100b 580 chr2L 16058101 16058148 chr2L 16058267 16058314 11 164 7.5 3.5 5.5 1.7 213 chr2L 16058101 intron beat-Ia + chr2L 16058208 intron beat-Ia + chr2L 16058314 intron beat-Ia + chr2L_11_16055001 chr2L_16055001 RAL-340_100b 581 chr2L 8578452 8578452 chr2L 16071771 16071771 6 7493319 39.0 25.0 32.0 0.2 7493319 chr2L 8578452 intron Sema-1a + chr2L 12325112 intergenic not near genes chr2L 16071771 intron beat-Ia + chr2L_6_12325001 chr2L_12325001 RAL-340_100b 582 chr2L 9723023 9723026 chr2L 16071771 16071771 10 6348746 88.0 25.0 56.5 0.2 6348748 chr2L 9723023 intron Nckx30C - chr2L 12897397 intergenic not near genes chr2L 16071771 intron beat-Ia + chr2L_10_12895001 chr2L_12895001 RAL-340_100b 583 chr2L 10176022 10176169 chr2L 16071771 16071771 7 5895727 35.0 25.0 30.0 0.2 5895749 chr2L 10176022 intron CG44153 - chr2L 13123896 intergenic not near genes chr2L 16071771 intron beat-Ia + chr2L_7_13120001 chr2L_13120001 RAL-340_100b 584 chr2L 10522357 10522358 chr2L 16071771 16071771 9 5549413 60.5 25.0 42.8 0.2 5549414 chr2L 10522357 intergenic not near genes chr2L 13297064 intron CG31729 + chr2L 16071771 intron beat-Ia + chr2L_9_13295001 chr2L_13295001 RAL-340_100b 585 chr2L 16071771 16071771 chr2L 16217660 16217661 copia 221 145889 22.5 70.5 46.5 4.7 145890 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217661 intergenic not near genes chr2L_221_16140001 chr2L_16140001 RAL-340_100b 586 chr2L 16115502 16115546 chr2L 16115600 16115600 10 95 8.0 11.0 9.5 1.0 98 chr2L 16115502 intergenic not near genes chr2L 16115551 intergenic not near genes chr2L 16115600 intergenic not near genes chr2L_10_16115001 chr2L_16115001 RAL-340_100b 587 chr2L 16141142 16141194 chr2L 16146374 16146426 copia 15 5232 4.5 10.5 7.5 1.8 5284 chr2L 16141142 intergenic not near genes chr2L 16143784 intergenic not near genes chr2L 16146426 intergenic not near genes chr2L_15_16140001 chr2L_16140001 RAL-340_100b 588 chr2L 16153729 16153749 chr2L 16160822 16160842 297 7 7093 12.5 4.0 8.2 0.8 7113 chr2L 16153729 intergenic not near genes chr2L 16157286 intergenic not near genes chr2L 16160842 intergenic not near genes chr2L_7_16155001 chr2L_16155001 RAL-340_100b 589 chr2L 3877513 3877559 chr2L 16217660 16217660 4 12340125 83.5 70.5 77.0 0.1 12340147 chr2L 3877513 intron capu - chr2L 10047586 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_4_10045001 chr2L_10045001 RAL-340_100b 590 chr2L 5242936 5242967 chr2L 16217660 16217660 8 10974719 55.0 70.5 62.8 0.1 10974724 chr2L 5242936 intron tkv - chr2L 10730298 3` UTR,5` UTR CG6443 +,CG17118 + chr2L 16217660 intergenic not near genes chr2L_8_10730001 chr2L_10730001 RAL-340_100b 591 chr2L 9084336 9084340 chr2L 16217660 16217660 67 7133321 46.5 70.5 58.5 1.1 7133324 chr2L 9084336 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_67_12650001 chr2L_12650001 RAL-340_100b 592 chr2L 9556201 9556268 chr2L 16217660 16217660 5 6661434 118.0 70.5 94.2 0.1 6661459 chr2L 9556201 5` UTR jp - chr2L 12886930 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_5_12885001 chr2L_12885001 RAL-340_100b 593 chr2L 9723023 9723026 chr2L 16217660 16217660 11 6494635 88.0 70.5 79.2 0.1 6494637 chr2L 9723023 intron Nckx30C - chr2L 12970342 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_11_12970001 chr2L_12970001 RAL-340_100b 594 chr2L 10522357 10522358 chr2L 16217660 16217660 4 5695302 60.5 70.5 65.5 0.1 5695303 chr2L 10522357 intergenic not near genes chr2L 13370008 3` UTR CG31855 + chr2L 16217660 intergenic not near genes chr2L_4_13370001 chr2L_13370001 RAL-340_100b 595 chr2L 12007140 12007221 chr2L 16217660 16217660 4 4210498 36.5 70.5 53.5 0.1 4210520 chr2L 12007140 intergenic not near genes chr2L 14112400 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_4_14110001 chr2L_14110001 RAL-340_100b 596 chr2L 12276860 12277082 chr2L 16217660 16217660 11 3940649 76.5 70.5 73.5 0.1 3940800 chr2L 12276860 intron aret + chr2L 14247260 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_11_14245001 chr2L_14245001 RAL-340_100b 597 chr2L 16071768 16071772 chr2L 16217660 16217660 copia 151 145889 23.0 70.5 46.8 3.2 145892 chr2L 16071768 intron beat-Ia + chr2L 16144714 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_151_16140001 chr2L_16140001 RAL-340_100b 598 chr2L 15332624 15332636 chr2L 16229993 16230032 4 897380 45.0 26.0 35.5 0.1 897408 chr2L 15332624 intergenic not near genes chr2L 15781328 intergenic not near genes chr2L 16230032 intergenic not near genes chr2L_4_15780001 chr2L_15780001 RAL-340_100b 599 chr2L 16280234 16280284 chr2L 16281430 16281480 1360 39 1195 14.5 17.0 15.8 2.3 1246 chr2L 16280234 intron crp - chr2L 16280857 intron crp - chr2L 16281480 intron crp - chr2L_39_16280001 chr2L_16280001 RAL-340_100b 600 chr2L 16317442 16317501 chr2L 16317547 16317606 29 100 8.5 12.0 10.2 2.6 164 chr2L 16317442 intron cact - chr2L 16317524 intron cact - chr2L 16317606 intron cact - chr2L_29_16315001 chr2L_16315001 RAL-340_100b 601 chr2L 16354760 16354784 chr2L 16354877 16354881 10 114 3.0 13.5 8.2 1.1 121 chr2L 16354760 intergenic CaBP1 -,CG4455 + chr2L 16354820 intergenic CaBP1 -,CG4455 + chr2L 16354881 intergenic CaBP1 -,CG4455 + chr2L_10_16350001 chr2L_16350001 RAL-340_100b 602 chr2L 16363945 16363969 chr2L 16364216 16364222 10 268 1.0 9.0 5.0 1.7 277 chr2L 16363945 intergenic not near genes chr2L 16364084 intergenic not near genes chr2L 16364222 intergenic not near genes chr2L_10_16360001 chr2L_16360001 RAL-340_100b 603 chr2L 16432489 16432519 chr2L 16432588 16432616 17 107 4.5 0.0 2.2 5.3 127 chr2L 16432489 intron CG5888 - chr2L 16432552 intron CG5888 - chr2L 16432616 intron CG5888 - chr2L_17_16430001 chr2L_16430001 RAL-340_100b 604 chr2L 16440790 16440831 chr2L 16441013 16441037 13 228 6.0 9.5 7.8 1.5 247 chr2L 16440790 intron CG5888 - chr2L 16440914 intron CG5888 - chr2L 16441037 intron CG5888 - chr2L_13_16440001 chr2L_16440001 RAL-340_100b 605 chr2L 16458804 16458812 chr2L 16459025 16459033 4 221 8.5 5.5 7.0 0.5 229 chr2L 16458804 intergenic not near genes chr2L 16458918 intergenic not near genes chr2L 16459033 intergenic not near genes chr2L_4_16455001 chr2L_16455001 RAL-340_100b 606 chr2L 16504976 16504981 chr2L 16505111 16505111 4 134 0.5 13.5 7.0 0.5 135 chr2L 16504976 intron Tpr2 + chr2L 16505044 intron Tpr2 + chr2L 16505111 intron Tpr2 + chr2L_4_16505001 chr2L_16505001 RAL-340_100b 607 chr2L 16504982 16505000 chr2L 16505107 16505128 12 133 0.5 13.0 6.8 1.5 146 chr2L 16504982 intron Tpr2 + chr2L 16505055 intron Tpr2 + chr2L 16505128 intron Tpr2 + chr2L_12_16505001 chr2L_16505001 RAL-340_100b 608 chr2L 16505001 16505016 chr2L 16505101 16505148 14 130 0.5 11.0 5.8 2.1 147 chr2L 16505001 intron Tpr2 + chr2L 16505074 intron Tpr2 + chr2L 16505148 intron Tpr2 + chr2L_14_16505001 chr2L_16505001 RAL-340_100b 609 chr2L 16507957 16507967 chr2L 16508035 16508080 9 103 0.5 9.0 4.8 1.6 123 chr2L 16507957 intergenic CG5953 -,Tpr2 + chr2L 16508018 intergenic CG5953 -,Tpr2 + chr2L 16508080 3` UTR CG5953 - chr2L_9_16505001 chr2L_16505001 RAL-340_100b 610 chr2L 16511941 16511996 chr2L 16519080 16519090 HMS-Beagle 15 7134 5.5 13.0 9.2 1.5 7149 chr2L 16511941 intron CG5953 - chr2L 16515516 intron CG5953 - chr2L 16519090 intron CG5953 - chr2L_15_16515001 chr2L_16515001 RAL-340_100b 611 chr2L 16547159 16547214 chr2L 16547275 16547323 15 115 1.5 5.5 3.5 3.3 164 chr2L 16547159 intron CG42389 + chr2L 16547241 intron CG42389 + chr2L 16547323 intron CG42389 + chr2L_15_16545001 chr2L_16545001 RAL-340_100b 612 chr2L 16548458 16548487 chr2L 16548604 16548632 5 146 7.0 0.0 3.5 1.1 174 chr2L 16548458 intron CG42389 + chr2L 16548545 intron CG42389 + chr2L 16548632 intron CG42389 + chr2L_5_16545001 chr2L_16545001 RAL-340_100b 613 chr2L 16550629 16550680 chr2L 16550730 16550781 17 99 12.0 13.0 12.5 1.3 152 chr2L 16550629 intron CG42389 + chr2L 16550705 intron CG42389 + chr2L 16550781 intron CG42389 + chr2L_17_16550001 chr2L_16550001 RAL-340_100b 614 chr2L 16709062 16709103 chr2L 16709164 16709212 11 105 4.0 4.0 4.0 2.2 150 chr2L 16709062 intron CG31808 - chr2L 16709137 intron CG31808 - chr2L 16709212 intron CG31808 - chr2L_11_16705001 chr2L_16705001 RAL-340_100b 615 chr2L 16729206 16729217 chr2L 16729537 16729548 5 338 0.0 2.5 1.2 2.3 342 chr2L 16729206 intergenic not near genes chr2L 16729377 intergenic CG31812 + chr2L 16729548 intergenic CG31812 + chr2L_5_16725001 chr2L_16725001 RAL-340_100b 616 chr2L 16796068 16796108 chr2L 16796194 16796219 9 121 0.0 12.0 6.0 1.3 151 chr2L 16796068 intergenic Ugt36Ba + chr2L 16796144 intergenic Ugt36Ba +,Ugt36Bb + chr2L 16796219 intergenic Ugt36Ba +,Ugt36Bb + chr2L_9_16795001 chr2L_16795001 RAL-340_100b 617 chr2L 16809820 16809875 chr2L 16809957 16810011 19 135 0.0 11.0 5.5 2.9 191 chr2L 16809820 intron,intron CG13280 -,CG13272 + chr2L 16809916 intron,intron CG13280 -,CG13272 + chr2L 16810011 intron,intron CG13280 -,CG13272 + chr2L_19_16805001 chr2L_16805001 RAL-340_100b 618 chr2L 16840975 16841027 chr2L 16841082 16841129 24 104 10.0 3.0 6.5 3.2 154 chr2L 16840975 intron,intron SclA +,SclB + chr2L 16841052 intron,intron SclA +,SclB + chr2L 16841129 intron,intron SclA +,SclB + chr2L_24_16840001 chr2L_16840001 RAL-340_100b 619 chr2L 16867007 16867040 chr2L 16867127 16867160 9 119 4.0 6.0 5.0 1.5 153 chr2L 16867007 intergenic not near genes chr2L 16867084 intergenic not near genes chr2L 16867160 intergenic not near genes chr2L_9_16865001 chr2L_16865001 RAL-340_100b 620 chr2L 16939976 16940015 chr2L 16940079 16940117 8 99 4.0 12.0 8.0 0.9 141 chr2L 16939976 intergenic not near genes chr2L 16940046 intergenic not near genes chr2L 16940117 intergenic not near genes chr2L_8_16940001 chr2L_16940001 RAL-340_100b 621 chr2L 16942210 16942214 chr2L 16942359 16942362 4 149 4.5 12.0 8.2 0.4 152 chr2L 16942210 intergenic not near genes chr2L 16942286 intergenic not near genes chr2L 16942362 intergenic not near genes chr2L_4_16940001 chr2L_16940001 RAL-340_100b 622 chr2L 16958083 16958134 chr2L 16962896 16962947 Doc 21 4812 3.5 7.5 5.5 3.2 4864 chr2L 16958083 intergenic not near genes chr2L 16960515 intergenic not near genes chr2L 16962947 intergenic not near genes chr2L_21_16960001 chr2L_16960001 RAL-340_100b 623 chr2L 16998986 16999032 chr2L 16999089 16999129 5 102 2.0 2.5 2.2 1.6 143 chr2L 16998986 intergenic CR45357 +,CR45356 + chr2L 16999058 intergenic CR45357 + chr2L 16999129 intergenic CR45357 + chr2L_5_16995001 chr2L_16995001 RAL-340_100b 624 chr2L 17000099 17000152 chr2L 17000246 17000299 24 144 6.0 11.0 8.5 2.5 200 chr2L 17000099 intergenic not near genes chr2L 17000199 intergenic not near genes chr2L 17000299 intergenic not near genes chr2L_24_17000001 chr2L_17000001 RAL-340_100b 625 chr2L 17111814 17111854 chr2L 17111936 17111977 8 123 10.0 3.0 6.5 1.1 163 chr2L 17111814 intergenic not near genes chr2L 17111896 intergenic not near genes chr2L 17111977 intergenic not near genes chr2L_8_17110001 chr2L_17110001 RAL-340_100b 626 chr2L 17120817 17120869 chr2L 17120921 17120973 11 99 3.0 2.5 2.8 2.9 156 chr2L 17120817 intergenic not near genes chr2L 17120895 intergenic not near genes chr2L 17120973 intergenic not near genes chr2L_11_17120001 chr2L_17120001 RAL-340_100b 627 chr2L 17158712 17158745 chr2L 17158825 17158873 16 120 4.5 5.0 4.8 2.8 161 chr2L 17158712 5` UTR,exon CG34106 +,beat-IIIa + chr2L 17158792 intron,intron CG34106 +,beat-IIIa + chr2L 17158873 intron,intron CG34106 +,beat-IIIa + chr2L_16_17155001 chr2L_17155001 RAL-340_100b 628 chr2L 17167541 17167596 chr2L 17167807 17167857 pogo 29 258 4.0 7.0 5.5 4.5 316 chr2L 17167541 intron,intron CG34106 +,beat-IIIa + chr2L 17167699 intron,intron CG34106 +,beat-IIIa + chr2L 17167857 intron,intron CG34106 +,beat-IIIa + chr2L_29_17165001 chr2L_17165001 RAL-340_100b 629 chr2L 17178379 17178398 chr2L 17178505 17178508 7 123 6.5 1.0 3.8 1.5 129 chr2L 17178379 intergenic Gr36b +,Gr36a + chr2L 17178444 intergenic Gr36b + chr2L 17178508 intergenic Gr36b + chr2L_7_17175001 chr2L_17175001 RAL-340_100b 630 chr2L 17193850 17193869 chr2L 17193950 17193981 4 109 0.0 2.0 1.0 2.0 131 chr2L 17193850 intron beat-IIIc - chr2L 17193916 intron beat-IIIc - chr2L 17193981 intron beat-IIIc - chr2L_4_17190001 chr2L_17190001 RAL-340_100b 631 chr2L 17199139 17199179 chr2L 17200631 17200671 hobo 10 1491 11.5 5.0 8.2 1.1 1532 chr2L 17199139 intron beat-IIIc - chr2L 17199905 intron beat-IIIc - chr2L 17200671 intron beat-IIIc - chr2L_10_17195001 chr2L_17195001 RAL-340_100b 632 chr2L 17204020 17204074 chr2L 17204119 17204174 24 96 6.5 6.0 6.2 3.3 154 chr2L 17204020 intron beat-IIIc - chr2L 17204097 intron beat-IIIc - chr2L 17204174 intron beat-IIIc - chr2L_24_17200001 chr2L_17200001 RAL-340_100b 633 chr2L 17234708 17234752 chr2L 17234839 17234865 7 120 6.5 25.5 16.0 0.4 157 chr2L 17234708 intron beat-IIIc - chr2L 17234786 intron beat-IIIc - chr2L 17234865 intron beat-IIIc - chr2L_7_17230001 chr2L_17230001 RAL-340_100b 634 chr2L 17273174 17273187 chr2L 17277982 17277986 F-element 8 4807 13.5 12.5 13.0 0.6 4812 chr2L 17273174 intergenic not near genes chr2L 17275580 intergenic not near genes chr2L 17277986 intergenic not near genes chr2L_8_17275001 chr2L_17275001 RAL-340_100b 635 chr2L 17273190 17273199 chr2L 17277977 17278007 F-element 7 4803 11.0 9.5 10.2 0.6 4817 chr2L 17273190 intergenic not near genes chr2L 17275598 intergenic not near genes chr2L 17278007 intergenic not near genes chr2L_7_17275001 chr2L_17275001 RAL-340_100b 636 chr2L 17273203 17273222 chr2L 17277971 17278029 F-element 13 4802 5.5 7.5 6.5 1.7 4826 chr2L 17273203 intergenic not near genes chr2L 17275616 intergenic not near genes chr2L 17278029 intergenic not near genes chr2L_13_17275001 chr2L_17275001 RAL-340_100b 637 chr2L 17280994 17281029 chr2L 17281074 17281119 10 95 10.5 12.0 11.2 0.8 125 chr2L 17280994 intergenic CR45729 + chr2L 17281056 intergenic not near genes chr2L 17281119 intergenic not near genes chr2L_10_17280001 chr2L_17280001 RAL-340_100b 638 chr2L 17287046 17287055 chr2L 17287173 17287190 7 133 10.5 17.0 13.8 0.5 144 chr2L 17287046 exon CG15140 + chr2L 17287118 exon CG15140 + chr2L 17287190 exon CG15140 + chr2L_7_17285001 chr2L_17285001 RAL-340_100b 639 chr2L 17292352 17292375 chr2L 17292457 17292457 9 102 11.5 4.0 7.8 1.0 105 chr2L 17292352 intergenic CG6380 - chr2L 17292404 intergenic CG6380 - chr2L 17292457 intergenic CG6380 - chr2L_9_17290001 chr2L_17290001 RAL-340_100b 640 chr2L 17292388 17292392 chr2L 17292449 17292497 4 94 8.5 3.5 6.0 0.6 109 chr2L 17292388 intergenic CG6380 - chr2L 17292442 intergenic CG6380 - chr2L 17292497 intergenic CG6380 - chr2L_4_17290001 chr2L_17290001 RAL-340_100b 641 chr2L 17303426 17303447 chr2L 17303629 17303648 4 197 6.5 14.5 10.5 0.3 222 chr2L 17303426 intergenic not near genes chr2L 17303537 intergenic not near genes chr2L 17303648 intergenic not near genes chr2L_4_17300001 chr2L_17300001 RAL-340_100b 642 chr2L 17303449 17303461 chr2L 17303627 17303648 5 187 4.5 13.5 9.0 0.5 199 chr2L 17303449 intergenic not near genes chr2L 17303548 intergenic not near genes chr2L 17303648 intergenic not near genes chr2L_5_17300001 chr2L_17300001 RAL-340_100b 643 chr2L 17303464 17303468 chr2L 17303621 17303670 6 187 2.5 12.0 7.2 0.7 206 chr2L 17303464 intergenic not near genes chr2L 17303567 intergenic not near genes chr2L 17303670 intergenic not near genes chr2L_6_17300001 chr2L_17300001 RAL-340_100b 644 chr2L 17335516 17335524 chr2L 17336715 17336723 1360 5 1199 8.0 12.5 10.2 0.4 1207 chr2L 17335516 intergenic not near genes chr2L 17336120 intergenic not near genes chr2L 17336723 intergenic not near genes chr2L_5_17335001 chr2L_17335001 RAL-340_100b 645 chr2L 17351906 17351954 chr2L 17352032 17352081 9 124 7.5 3.0 5.2 1.5 175 chr2L 17351906 intergenic not near genes chr2L 17351994 intergenic not near genes chr2L 17352081 intergenic not near genes chr2L_9_17350001 chr2L_17350001 RAL-340_100b 646 chr2L 17360006 17360038 chr2L 17360209 17360241 11 201 6.5 3.5 5.0 1.8 235 chr2L 17360006 intergenic not near genes chr2L 17360124 intergenic not near genes chr2L 17360241 intergenic not near genes chr2L_11_17360001 chr2L_17360001 RAL-340_100b 647 chr2L 17380429 17380450 chr2L 17380724 17380744 7 294 8.0 11.0 9.5 0.7 315 chr2L 17380429 intron Lrch - chr2L 17380586 intron Lrch - chr2L 17380744 intron Lrch - chr2L_7_17380001 chr2L_17380001 RAL-340_100b 648 chr2L 17380456 17380482 chr2L 17380719 17380750 13 285 2.5 9.5 6.0 1.9 294 chr2L 17380456 intron Lrch - chr2L 17380603 intron Lrch - chr2L 17380750 intron Lrch - chr2L_13_17380001 chr2L_17380001 RAL-340_100b 649 chr2L 17405639 17405696 chr2L 17406122 17406163 30 480 3.5 5.0 4.2 5.8 524 chr2L 17405639 exon CLIP-190 + chr2L 17405901 exon CLIP-190 + chr2L 17406163 exon CLIP-190 + chr2L_30_17405001 chr2L_17405001 RAL-340_100b 650 chr2L 17425749 17425792 chr2L 17425901 17425944 7 152 6.5 7.5 7.0 0.9 195 chr2L 17425749 intron Dif - chr2L 17425846 intron Dif - chr2L 17425944 intron Dif - chr2L_7_17425001 chr2L_17425001 RAL-340_100b 651 chr2L 17432019 17432037 chr2L 17432130 17432148 1360 9 122 0.0 7.5 3.8 1.9 129 chr2L 17432019 intron Dif - chr2L 17432084 intron Dif - chr2L 17432148 intron Dif - chr2L_9_17430001 chr2L_17430001 RAL-340_100b 652 chr2L 17533417 17533430 chr2L 17533529 17533531 5 110 6.5 4.0 5.2 0.8 114 chr2L 17533417 intergenic not near genes chr2L 17533474 intergenic not near genes chr2L 17533531 intergenic not near genes chr2L_5_17530001 chr2L_17530001 RAL-340_100b 653 chr2L 17607459 17607472 chr2L 17607582 17607595 9 122 5.5 1.5 3.5 2.0 136 chr2L 17607459 intergenic CR44412 - chr2L 17607527 intergenic CR44412 - chr2L 17607595 intergenic CR44412 - chr2L_9_17605001 chr2L_17605001 RAL-340_100b 654 chr2L 17675918 17675959 chr2L 17676048 17676089 5 124 1.5 3.5 2.5 1.4 171 chr2L 17675918 intron CadN - chr2L 17676004 intron CadN - chr2L 17676089 intron CadN - chr2L_5_17675001 chr2L_17675001 RAL-340_100b 655 chr2L 17677273 17677327 chr2L 17677499 17677553 26 223 19.0 10.0 14.5 1.7 280 chr2L 17677273 intron CadN - chr2L 17677413 intron CadN - chr2L 17677553 intron CadN - chr2L_26_17675001 chr2L_17675001 RAL-340_100b 656 chr2L 17687493 17687522 chr2L 17692263 17692292 F-element 11 4770 10.0 4.5 7.2 1.3 4799 chr2L 17687493 intron CadN - chr2L 17689892 intron CadN - chr2L 17692292 intron CadN - chr2L_11_17685001 chr2L_17685001 RAL-340_100b 657 chr2L 17727539 17727575 chr2L 17727640 17727686 12 109 0.5 9.5 5.0 2.0 147 chr2L 17727539 intron CadN - chr2L 17727612 intron CadN - chr2L 17727686 intron CadN - chr2L_12_17725001 chr2L_17725001 RAL-340_100b 658 chr2L 17727845 17727860 chr2L 17729337 17729352 hobo 10 1491 26.5 25.0 25.8 0.4 1507 chr2L 17727845 intron CadN - chr2L 17728598 intron CadN - chr2L 17729352 intron CadN - chr2L_10_17725001 chr2L_17725001 RAL-340_100b 659 chr2L 17819894 17819940 chr2L 17825123 17825139 copia 7 5223 9.5 11.0 10.2 0.6 5245 chr2L 17819894 intron CadN2 - chr2L 17822516 intron CadN2 - chr2L 17825139 intron CadN2 - chr2L_7_17820001 chr2L_17820001 RAL-340_100b 660 chr2L 17828217 17828247 chr2L 17828346 17828376 8 126 6.0 5.0 5.5 1.2 159 chr2L 17828217 intron CadN2 - chr2L 17828296 intron CadN2 - chr2L 17828376 intron CadN2 - chr2L_8_17825001 chr2L_17825001 RAL-340_100b 661 chr2L 17879973 17880030 chr2L 17880085 17880101 47 106 20.5 8.0 14.2 3.1 128 chr2L 17879973 intergenic not near genes chr2L 17880037 intergenic not near genes chr2L 17880101 intergenic not near genes chr2L_47_17880001 chr2L_17880001 RAL-340_100b 662 chr2L 17891449 17891451 chr2L 17891552 17891554 4 103 22.0 14.0 18.0 0.2 105 chr2L 17891449 intergenic not near genes chr2L 17891502 intergenic not near genes chr2L 17891554 intergenic not near genes chr2L_4_17890001 chr2L_17890001 RAL-340_100b 663 chr2L 17891454 17891483 chr2L 17891549 17891581 25 101 7.5 13.5 10.5 2.2 127 chr2L 17891454 intergenic not near genes chr2L 17891518 intergenic not near genes chr2L 17891581 intergenic not near genes chr2L_25_17890001 chr2L_17890001 RAL-340_100b 664 chr2L 17944394 17944407 chr2L 17944582 17944595 7 187 17.0 4.5 10.8 0.6 201 chr2L 17944394 intergenic not near genes chr2L 17944494 intergenic not near genes chr2L 17944595 intergenic not near genes chr2L_7_17940001 chr2L_17940001 RAL-340_100b 665 chr2L 17944414 17944434 chr2L 17944590 17944602 12 185 8.5 6.0 7.2 1.5 188 chr2L 17944414 intergenic not near genes chr2L 17944508 intergenic not near genes chr2L 17944602 intergenic not near genes chr2L_12_17940001 chr2L_17940001 RAL-340_100b 666 chr2L 17951930 17951975 chr2L 17953417 17953467 hobo 20 1492 3.0 4.5 3.8 4.2 1537 chr2L 17951930 intergenic CR44398 -,CR44397 - chr2L 17952698 intergenic not near genes chr2L 17953467 intergenic not near genes chr2L_20_17950001 chr2L_17950001 RAL-340_100b 667 chr2L 18051858 18051894 chr2L 18061030 18061066 roo 7 9172 19.5 12.5 16.0 0.4 9208 chr2L 18051858 intron rdo + chr2L 18056462 intron rdo + chr2L 18061066 intron rdo + chr2L_7_18055001 chr2L_18055001 RAL-340_100b 668 chr2L 18087598 18087642 chr2L 18087807 18087845 17 203 9.5 4.5 7.0 2.1 247 chr2L 18087598 intergenic not near genes chr2L 18087722 intergenic not near genes chr2L 18087845 intergenic not near genes chr2L_17_18085001 chr2L_18085001 RAL-340_100b 669 chr2L 18095564 18095590 chr2L 18095670 18095696 4 102 11.5 6.5 9.0 0.4 132 chr2L 18095564 intergenic not near genes chr2L 18095630 intergenic not near genes chr2L 18095696 intergenic not near genes chr2L_4_18095001 chr2L_18095001 RAL-340_100b 670 chr2L 18111216 18111226 chr2L 18111332 18111342 8 116 19.5 13.5 16.5 0.5 126 chr2L 18111216 intergenic not near genes chr2L 18111279 intergenic not near genes chr2L 18111342 intergenic not near genes chr2L_8_18110001 chr2L_18110001 RAL-340_100b 671 chr2L 18111228 18111248 chr2L 18111332 18111339 14 111 14.0 13.5 13.8 0.9 111 chr2L 18111228 intergenic not near genes chr2L 18111284 intergenic not near genes chr2L 18111339 intergenic not near genes chr2L_14_18110001 chr2L_18110001 RAL-340_100b 672 chr2L 18143445 18143471 chr2L 18143550 18143576 11 104 22.0 11.0 16.5 0.6 131 chr2L 18143445 intron Socs36E - chr2L 18143510 intron Socs36E - chr2L 18143576 intron Socs36E - chr2L_11_18140001 chr2L_18140001 RAL-340_100b 673 chr2L 18143472 18143500 chr2L 18143547 18143605 18 96 10.5 11.0 10.8 1.5 133 chr2L 18143472 intron Socs36E - chr2L 18143538 intron Socs36E - chr2L 18143605 intron Socs36E - chr2L_18_18140001 chr2L_18140001 RAL-340_100b 674 chr2L 18159716 18159772 chr2L 18162228 18162284 26 2516 46.0 55.5 50.8 0.5 2568 chr2L 18159716 intergenic CG42750 -,CG7200 - chr2L 18161000 3` UTR CG42750 - chr2L 18162284 intron CG42750 - chr2L_26_18160001 chr2L_18160001 RAL-340_100b 675 chr2L 18254788 18254832 chr2L 18254913 18254957 9 124 10.5 13.5 12.0 0.7 169 chr2L 18254788 intron CG42750 - chr2L 18254872 intron CG42750 - chr2L 18254957 intron CG42750 - chr2L_9_18250001 chr2L_18250001 RAL-340_100b 676 chr2L 18274015 18274071 chr2L 18274126 18274172 20 107 6.5 7.5 7.0 2.5 157 chr2L 18274015 intron CG42750 - chr2L 18274094 intron CG42750 - chr2L 18274172 intron CG42750 - chr2L_20_18270001 chr2L_18270001 RAL-340_100b 677 chr2L 18286393 18286444 chr2L 18286511 18286562 11 117 10.0 8.0 9.0 1.1 169 chr2L 18286393 intergenic not near genes chr2L 18286478 intergenic not near genes chr2L 18286562 intergenic not near genes chr2L_11_18285001 chr2L_18285001 RAL-340_100b 678 chr2L 18408004 18408059 chr2L 18412813 18412876 Doc 14 4808 7.0 0.5 3.8 2.9 4872 chr2L 18408004 intergenic not near genes chr2L 18410440 intergenic not near genes chr2L 18412876 intergenic not near genes chr2L_14_18410001 chr2L_18410001 RAL-340_100b 679 chr2L 18439055 18439105 chr2L 18439166 18439216 16 110 11.5 6.5 9.0 1.6 161 chr2L 18439055 intergenic not near genes chr2L 18439136 intergenic not near genes chr2L 18439216 intergenic not near genes chr2L_16_18435001 chr2L_18435001 RAL-340_100b 680 chr2L 18442363 18442367 chr2L 18442431 18442471 4 95 6.0 15.5 10.8 0.3 108 chr2L 18442363 3` UTR RpS26 - chr2L 18442417 3` UTR RpS26 - chr2L 18442471 3` UTR RpS26 - chr2L_4_18440001 chr2L_18440001 RAL-340_100b 681 chr2L 18449361 18449417 chr2L 18449487 18449543 16 125 7.5 6.0 6.8 2.1 182 chr2L 18449361 intergenic bsf -,ncm - chr2L 18449452 intergenic bsf -,ncm - chr2L 18449543 3` UTR bsf - chr2L_16_18445001 chr2L_18445001 RAL-340_100b 682 chr2L 18535730 18535743 chr2L 18535843 18535856 4 113 0.5 0.5 0.5 2.7 126 chr2L 18535730 intron Pde11 - chr2L 18535793 intron Pde11 - chr2L 18535856 intron Pde11 - chr2L_4_18535001 chr2L_18535001 RAL-340_100b 683 chr2L 18573636 18573682 chr2L 18573933 18573979 64 301 65.0 108.0 86.5 0.7 343 chr2L 18573636 intron Pde11 - chr2L 18573808 intron Pde11 - chr2L 18573979 intron Pde11 - chr2L_64_18570001 chr2L_18570001 RAL-340_100b 684 chr2L 18584754 18584776 chr2L 18584854 18584886 25 108 3.0 16.5 9.8 2.3 132 chr2L 18584754 intron Pde11 - chr2L 18584820 intron Pde11 - chr2L 18584886 intron Pde11 - chr2L_25_18580001 chr2L_18580001 RAL-340_100b 685 chr2L 18584777 18584779 chr2L 18584850 18584884 6 90 2.5 15.0 8.8 0.6 107 chr2L 18584777 intron Pde11 - chr2L 18584830 intron Pde11 - chr2L 18584884 intron Pde11 - chr2L_6_18580001 chr2L_18580001 RAL-340_100b 686 chr2L 18587772 18587818 chr2L 18587919 18587965 17 145 3.5 1.0 2.2 5.3 193 chr2L 18587772 intron Pde11 - chr2L 18587868 intron Pde11 - chr2L 18587965 intron Pde11 - chr2L_17_18585001 chr2L_18585001 RAL-340_100b 687 chr2L 16217660 16217660 chr2L 18622708 18622755 22 2405058 62.5 42.5 52.5 0.4 2405095 chr2L 16217660 intergenic not near genes chr2L 17420208 intron Dif - chr2L 18622755 intron MESR3 + chr2L_22_17420001 chr2L_17420001 RAL-340_100b 688 chr2L 18653979 18653998 chr2L 18654154 18654165 5 175 25.0 11.5 18.2 0.3 186 chr2L 18653979 intron MESR3 + chr2L 18654072 intron MESR3 + chr2L 18654165 intron MESR3 + chr2L_5_18650001 chr2L_18650001 RAL-340_100b 689 chr2L 18654005 18654030 chr2L 18654167 18654195 14 173 8.5 14.5 11.5 1.1 190 chr2L 18654005 intron MESR3 + chr2L 18654100 intron MESR3 + chr2L 18654195 intron MESR3 + chr2L_14_18650001 chr2L_18650001 RAL-340_100b 690 chr2L 18671974 18672028 chr2L 18672082 18672089 31 101 8.0 7.0 7.5 3.6 115 chr2L 18671974 exon CG43339 - chr2L 18672032 exon CG43339 - chr2L 18672089 exon CG43339 - chr2L_31_18670001 chr2L_18670001 RAL-340_100b 691 chr2L 18678365 18678402 chr2L 18678475 18678512 4 110 1.0 4.5 2.8 1.1 147 chr2L 18678365 intron CG31751 + chr2L 18678438 intron CG31751 + chr2L 18678512 intron CG31751 + chr2L_4_18675001 chr2L_18675001 RAL-340_100b 692 chr2L 18816725 18816729 chr2L 18816870 18816886 4 154 22.0 7.0 14.5 0.3 161 chr2L 18816725 intergenic not near genes chr2L 18816806 intergenic not near genes chr2L 18816886 intergenic not near genes chr2L_4_18815001 chr2L_18815001 RAL-340_100b 693 chr2L 18816731 18816773 chr2L 18816868 18816905 25 149 8.5 7.0 7.8 2.8 174 chr2L 18816731 intergenic not near genes chr2L 18816818 intergenic not near genes chr2L 18816905 intergenic not near genes chr2L_25_18815001 chr2L_18815001 RAL-340_100b 694 chr2L 18883834 18883851 chr2L 18883940 18883958 6 107 15.5 12.0 13.8 0.4 124 chr2L 18883834 intergenic not near genes chr2L 18883896 intergenic not near genes chr2L 18883958 intergenic not near genes chr2L_6_18880001 chr2L_18880001 RAL-340_100b 695 chr2L 18883866 18883883 chr2L 18883938 18883990 20 103 8.0 11.5 9.8 1.9 124 chr2L 18883866 intergenic not near genes chr2L 18883928 intergenic not near genes chr2L 18883990 intergenic not near genes chr2L_20_18880001 chr2L_18880001 RAL-340_100b 696 chr2L 18902598 18902657 chr2L 18902904 18902963 21 302 2.5 4.5 3.5 4.7 365 chr2L 18902598 intergenic not near genes chr2L 18902780 intergenic not near genes chr2L 18902963 intergenic not near genes chr2L_21_18900001 chr2L_18900001 RAL-340_100b 697 chr2L 18981726 18981768 chr2L 18981828 18981870 17 95 7.5 10.5 9.0 1.7 144 chr2L 18981726 intron Swip-1 - chr2L 18981798 intron Swip-1 - chr2L 18981870 intron Swip-1 - chr2L_17_18980001 chr2L_18980001 RAL-340_100b 698 chr2L 18981769 18981774 chr2L 18981826 18981869 6 90 7.5 8.5 8.0 0.7 100 chr2L 18981769 intron Swip-1 - chr2L 18981819 intron Swip-1 - chr2L 18981869 intron Swip-1 - chr2L_6_18980001 chr2L_18980001 RAL-340_100b 699 chr2L 19016218 19016275 chr2L 19016339 19016390 24 120 10.5 8.5 9.5 2.3 172 chr2L 19016218 intergenic not near genes chr2L 19016304 intergenic not near genes chr2L 19016390 intergenic not near genes chr2L_24_19015001 chr2L_19015001 RAL-340_100b 700 chr2L 19024096 19024096 chr2L 21768291 21768293 8 2744195 78.5 48.5 63.5 0.1 2744197 chr2L 19024096 3` UTR CR43700 - chr2L 20396194 intron CG10947 - chr2L 21768293 intron CG31612 - chr2L_8_20395001 chr2L_20395001 RAL-340_100b 701 chr2L 19024097 19024097 chr2L 21768291 21768291 12 2744194 78.0 48.5 63.2 0.2 2744194 chr2L 19024097 3` UTR CR43700 - chr2L 20396194 intron CG10947 - chr2L 21768291 intron CG31612 - chr2L_12_20395001 chr2L_20395001 RAL-340_100b 702 chr2L 19035905 19035940 chr2L 19036013 19036055 13 111 12.0 8.5 10.2 1.2 150 chr2L 19035905 intron mib2 + chr2L 19035980 intron mib2 + chr2L 19036055 intron mib2 + chr2L_13_19035001 chr2L_19035001 RAL-340_100b 703 chr2L 19147344 19147368 chr2L 19154404 19154422 297 12 7059 12.5 11.5 12.0 0.9 7078 chr2L 19147344 intron brat + chr2L 19150883 intron brat + chr2L 19154422 intron brat + chr2L_12_19150001 chr2L_19150001 RAL-340_100b 704 chr2L 19147371 19147384 chr2L 19154431 19154438 297 6 7056 7.5 14.5 11.0 0.5 7067 chr2L 19147371 intron brat + chr2L 19150904 intron brat + chr2L 19154438 intron brat + chr2L_6_19150001 chr2L_19150001 RAL-340_100b 705 chr2L 19147385 19147400 chr2L 19154422 19154460 297 7 7054 5.5 14.0 9.8 0.6 7075 chr2L 19147385 intron brat + chr2L 19150922 intron brat + chr2L 19154460 intron brat + chr2L_7_19150001 chr2L_19150001 RAL-340_100b 706 chr2L 19237299 19237316 chr2L 19237407 19237433 10 119 29.5 9.5 19.5 0.5 134 chr2L 19237299 intergenic not near genes chr2L 19237366 intergenic not near genes chr2L 19237433 intergenic not near genes chr2L_10_19235001 chr2L_19235001 RAL-340_100b 707 chr2L 19237317 19237332 chr2L 19237402 19237457 9 109 11.5 8.5 10.0 0.8 140 chr2L 19237317 intergenic not near genes chr2L 19237387 intergenic not near genes chr2L 19237457 intergenic not near genes chr2L_9_19235001 chr2L_19235001 RAL-340_100b 708 chr2L 19345007 19345045 chr2L 19357229 19357239 blood 21 12227 6.0 13.5 9.8 1.9 12232 chr2L 19345007 intron dnt - chr2L 19351123 intron dnt - chr2L 19357239 intron dnt - chr2L_21_19350001 chr2L_19350001 RAL-340_100b 709 chr2L 19357520 19357568 chr2L 19357635 19357683 18 107 3.0 11.0 7.0 2.2 163 chr2L 19357520 intron dnt - chr2L 19357602 intron dnt - chr2L 19357683 intron dnt - chr2L_18_19355001 chr2L_19355001 RAL-340_100b 710 chr2L 19374466 19374520 chr2L 19374600 19374642 32 131 5.0 7.0 6.0 4.6 176 chr2L 19374466 intergenic not near genes chr2L 19374554 intergenic not near genes chr2L 19374642 intergenic not near genes chr2L_32_19370001 chr2L_19370001 RAL-340_100b 711 chr2L 19405595 19405633 chr2L 19405710 19405717 23 110 6.0 2.5 4.2 4.4 122 chr2L 19405595 intron Pax - chr2L 19405656 intron Pax - chr2L 19405717 intron Pax - chr2L_23_19405001 chr2L_19405001 RAL-340_100b 712 chr2L 19407703 19407739 chr2L 19407913 19407961 11 220 6.0 6.0 6.0 1.6 258 chr2L 19407703 intron Pax - chr2L 19407832 intron Pax - chr2L 19407961 intron Pax - chr2L_11_19405001 chr2L_19405001 RAL-340_100b 713 chr2L 19441041 19441089 chr2L 19441143 19441180 20 100 14.0 7.5 10.8 1.7 139 chr2L 19441041 intron CG10237 - chr2L 19441110 intron CG10237 - chr2L 19441180 5` UTR CG10237 - chr2L_20_19440001 chr2L_19440001 RAL-340_100b 714 chr2L 19557825 19557854 chr2L 19557923 19557924 6 102 3.0 10.0 6.5 0.8 99 chr2L 19557825 intergenic Tep5 + chr2L 19557874 intergenic Tep5 + chr2L 19557924 intergenic Tep5 + chr2L_6_19555001 chr2L_19555001 RAL-340_100b 715 chr2L 19558524 19558529 chr2L 19558653 19558658 4 129 1.0 6.5 3.8 0.8 134 chr2L 19558524 intron Tep5 + chr2L 19558591 intron Tep5 + chr2L 19558658 intron Tep5 + chr2L_4_19555001 chr2L_19555001 RAL-340_100b 716 chr2L 19558538 19558550 chr2L 19558652 19558679 4 123 1.0 6.5 3.8 0.8 141 chr2L 19558538 intron Tep5 + chr2L 19558608 intron Tep5 + chr2L 19558679 intron Tep5 + chr2L_4_19555001 chr2L_19555001 RAL-340_100b 717 chr2L 19559982 19560039 chr2L 19560260 19560315 26 272 3.5 7.0 5.2 4.2 333 chr2L 19559982 exon Tep5 + chr2L 19560148 exon Tep5 + chr2L 19560315 intron Tep5 + chr2L_26_19560001 chr2L_19560001 RAL-340_100b 718 chr2L 19560827 19560847 chr2L 19560916 19560942 8 102 13.5 0.5 7.0 1.0 115 chr2L 19560827 intron Tep5 + chr2L 19560884 exon Tep5 + chr2L 19560942 exon Tep5 + chr2L_8_19560001 chr2L_19560001 RAL-340_100b 719 chr2L 19561315 19561364 chr2L 19561483 19561530 10 163 11.0 7.5 9.2 1.0 215 chr2L 19561315 exon Tep5 + chr2L 19561422 exon Tep5 + chr2L 19561530 exon Tep5 + chr2L_10_19560001 chr2L_19560001 RAL-340_100b 720 chr2L 19601552 19601598 chr2L 19601648 19601700 5 96 1.0 5.5 3.2 1.2 148 chr2L 19601552 intron,intron Lar +,CR44978 - chr2L 19601626 intron,intron Lar +,CR44978 - chr2L 19601700 intron,intron Lar +,CR44978 - chr2L_5_19600001 chr2L_19600001 RAL-340_100b 721 chr2L 19620072 19620110 chr2L 19621086 19621111 jockey 28 1011 24.5 17.5 21.0 1.3 1039 chr2L 19620072 intron Lar + chr2L 19620592 intron Lar + chr2L 19621111 intron Lar + chr2L_28_19620001 chr2L_19620001 RAL-340_100b 722 chr2L 19620111 19620119 chr2L 19621080 19621127 jockey 12 999 21.5 14.5 18.0 0.6 1016 chr2L 19620111 intron Lar + chr2L 19620619 intron Lar + chr2L 19621127 intron Lar + chr2L_12_19620001 chr2L_19620001 RAL-340_100b 723 chr2L 19620120 19620132 chr2L 19621079 19621138 jockey 15 997 15.5 14.5 15.0 0.9 1018 chr2L 19620120 intron Lar + chr2L 19620629 intron Lar + chr2L 19621138 intron Lar + chr2L_15_19620001 chr2L_19620001 RAL-340_100b 724 chr2L 19627308 19627312 chr2L 19627409 19627425 4 104 34.0 18.0 26.0 0.1 117 chr2L 19627308 intron Lar + chr2L 19627366 intron Lar + chr2L 19627425 intron Lar + chr2L_4_19625001 chr2L_19625001 RAL-340_100b 725 chr2L 19652551 19652596 chr2L 19674004 19674040 opus 10 21454 8.0 11.0 9.5 1.0 21489 chr2L 19652551 intron Lar + chr2L 19663296 intron Lar + chr2L 19674040 intron Lar + chr2L_10_19660001 chr2L_19660001 RAL-340_100b 726 chr2L 19689035 19689079 chr2L 19689164 19689196 15 124 12.0 18.5 15.2 0.9 161 chr2L 19689035 intron Lar + chr2L 19689116 intron Lar + chr2L 19689196 intron Lar + chr2L_15_19685001 chr2L_19685001 RAL-340_100b 727 chr2L 19697115 19697169 chr2L 19697228 19697261 22 115 5.5 7.0 6.2 3.1 146 chr2L 19697115 intron Lar + chr2L 19697188 intron Lar + chr2L 19697261 intron Lar + chr2L_22_19695001 chr2L_19695001 RAL-340_100b 728 chr2L 19703515 19703545 chr2L 19712676 19712706 roo 6 9161 12.0 6.5 9.2 0.6 9191 chr2L 19703515 intron Lar + chr2L 19708110 intron Lar + chr2L 19712706 intron Lar + chr2L_6_19705001 chr2L_19705001 RAL-340_100b 729 chr2L 19703546 19703570 chr2L 19712672 19712708 roo 16 9145 5.5 6.0 5.8 2.4 9162 chr2L 19703546 intron Lar + chr2L 19708127 intron Lar + chr2L 19712708 intron Lar + chr2L_16_19705001 chr2L_19705001 RAL-340_100b 730 chr2L 19712702 19712721 chr2L 19712771 19712789 4 85 5.5 10.0 7.8 0.5 87 chr2L 19712702 intron Lar + chr2L 19712746 intron Lar + chr2L 19712789 intron Lar + chr2L_4_19710001 chr2L_19710001 RAL-340_100b 731 chr2L 19737345 19737388 chr2L 19740831 19740865 1360 18 3483 4.0 8.5 6.2 2.5 3520 chr2L 19737345 intergenic Nf-YB + chr2L 19739105 intergenic not near genes chr2L 19740865 intergenic not near genes chr2L_18_19735001 chr2L_19735001 RAL-340_100b 732 chr2L 19762788 19762838 chr2L 19763049 19763105 pogo 20 264 4.5 6.5 5.5 3.1 317 chr2L 19762788 exon fbp - chr2L 19762946 intron fbp - chr2L 19763105 intron fbp - chr2L_20_19760001 chr2L_19760001 RAL-340_100b 733 chr2L 19773137 19773193 chr2L 19773249 19773281 21 110 7.0 8.0 7.5 2.5 144 chr2L 19773137 intergenic not near genes chr2L 19773209 intergenic not near genes chr2L 19773281 intergenic not near genes chr2L_21_19770001 chr2L_19770001 RAL-340_100b 734 chr2L 19824389 19824432 chr2L 19824497 19824540 12 105 5.0 9.5 7.2 1.5 151 chr2L 19824389 intron sick + chr2L 19824464 intron sick + chr2L 19824540 intron sick + chr2L_12_19820001 chr2L_19820001 RAL-340_100b 735 chr2L 19935222 19935257 chr2L 19935324 19935346 11 94 4.0 13.0 8.5 1.2 124 chr2L 19935222 intron sick + chr2L 19935284 intron sick + chr2L 19935346 intron sick + chr2L_11_19935001 chr2L_19935001 RAL-340_100b 736 chr2L 19941489 19941524 chr2L 19941603 19941638 19 111 7.0 5.0 6.0 2.7 149 chr2L 19941489 intron sick + chr2L 19941564 intron sick + chr2L 19941638 intron sick + chr2L_19_19940001 chr2L_19940001 RAL-340_100b 737 chr2L 19994627 19994650 chr2L 19994732 19994748 8 103 11.5 19.5 15.5 0.5 121 chr2L 19994627 intron CG43861 - chr2L 19994688 intron CG43861 - chr2L 19994748 intron CG43861 - chr2L_8_19990001 chr2L_19990001 RAL-340_100b 738 chr2L 19994653 19994687 chr2L 19994728 19994782 12 82 7.5 19.0 13.2 0.8 129 chr2L 19994653 intron CG43861 - chr2L 19994718 intron CG43861 - chr2L 19994782 intron CG43861 - chr2L_12_19990001 chr2L_19990001 RAL-340_100b 739 chr2L 20000027 20000035 chr2L 20000141 20000148 7 114 11.5 3.5 7.5 0.8 121 chr2L 20000027 intron CG43861 - chr2L 20000088 intron CG43861 - chr2L 20000148 intron,3` UTR CG43861 -,CR44908 - chr2L_7_20000001 chr2L_20000001 RAL-340_100b 740 chr2L 20000036 20000078 chr2L 20000140 20000192 11 100 3.0 3.0 3.0 2.8 156 chr2L 20000036 intron CG43861 - chr2L 20000114 intron CG43861 - chr2L 20000192 intron,3` UTR CG43861 -,CR44908 - chr2L_11_20000001 chr2L_20000001 RAL-340_100b 741 chr2L 20005855 20005905 chr2L 20010956 20010971 flea 23 5095 5.0 23.0 14.0 1.5 5116 chr2L 20005855 intron CG43861 - chr2L 20008413 intron CG43861 - chr2L 20010971 intron CG43861 - chr2L_23_20005001 chr2L_20005001 RAL-340_100b 742 chr2L 20022064 20022098 chr2L 20022202 20022236 14 134 8.0 5.0 6.5 1.9 172 chr2L 20022064 intergenic not near genes chr2L 20022150 intergenic not near genes chr2L 20022236 intergenic not near genes chr2L_14_20020001 chr2L_20020001 RAL-340_100b 743 chr2L 20057033 20057072 chr2L 20057130 20057174 9 100 12.5 3.0 7.8 1.0 141 chr2L 20057033 intergenic not near genes chr2L 20057104 intergenic not near genes chr2L 20057174 intergenic not near genes chr2L_9_20055001 chr2L_20055001 RAL-340_100b 744 chr2L 20122619 20122638 chr2L 20122734 20122754 4 116 6.0 7.0 6.5 0.5 135 chr2L 20122619 intergenic not near genes chr2L 20122686 intergenic not near genes chr2L 20122754 intergenic not near genes chr2L_4_20120001 chr2L_20120001 RAL-340_100b 745 chr2L 20124309 20124361 chr2L 20124412 20124464 12 99 9.0 2.5 5.8 1.8 155 chr2L 20124309 intergenic not near genes chr2L 20124386 intergenic not near genes chr2L 20124464 intergenic not near genes chr2L_12_20120001 chr2L_20120001 RAL-340_100b 746 chr2L 20232357 20232402 chr2L 20232461 20232506 9 104 9.0 7.0 8.0 1.0 149 chr2L 20232357 intergenic not near genes chr2L 20232432 intergenic not near genes chr2L 20232506 intergenic not near genes chr2L_9_20230001 chr2L_20230001 RAL-340_100b 747 chr2L 20271245 20271270 chr2L 20271346 20271378 13 106 11.5 12.5 12.0 1.0 133 chr2L 20271245 intergenic not near genes chr2L 20271312 intergenic not near genes chr2L 20271378 intergenic not near genes chr2L_13_20270001 chr2L_20270001 RAL-340_100b 748 chr2L 20272094 20272145 chr2L 20282830 20282869 copia 17 10734 10.0 7.0 8.5 1.8 10775 chr2L 20272094 intergenic not near genes chr2L 20277482 intergenic not near genes chr2L 20282869 intergenic not near genes chr2L_17_20275001 chr2L_20275001 RAL-340_100b 749 chr2L 20296501 20296530 chr2L 20296607 20296636 20 105 3.0 9.5 6.2 2.8 135 chr2L 20296501 intergenic CR43414 - chr2L 20296568 intergenic CR43414 - chr2L 20296636 intergenic CR43414 - chr2L_20_20295001 chr2L_20295001 RAL-340_100b 750 chr2L 20296533 20296539 chr2L 20296599 20296645 5 98 3.0 7.5 5.2 0.8 112 chr2L 20296533 intergenic CR43414 - chr2L 20296589 intergenic CR43414 - chr2L 20296645 3` UTR CR43414 - chr2L_5_20295001 chr2L_20295001 RAL-340_100b 751 chr2L 20299398 20299405 chr2L 20299540 20299553 7 147 8.0 9.5 8.8 0.7 155 chr2L 20299398 intergenic not near genes chr2L 20299476 intergenic not near genes chr2L 20299553 intergenic not near genes chr2L_7_20295001 chr2L_20295001 RAL-340_100b 752 chr2L 20299412 20299445 chr2L 20299534 20299567 22 138 0.0 8.5 4.2 4.2 155 chr2L 20299412 intergenic not near genes chr2L 20299490 intergenic not near genes chr2L 20299567 intergenic not near genes chr2L_22_20295001 chr2L_20295001 RAL-340_100b 753 chr2L 20303161 20303183 chr2L 20310654 20310676 blood 5 7493 2.5 10.5 6.5 0.7 7515 chr2L 20303161 intergenic not near genes chr2L 20306918 intergenic not near genes chr2L 20310676 intergenic not near genes chr2L_5_20305001 chr2L_20305001 RAL-340_100b 754 chr2L 20336052 20336092 chr2L 20336162 20336202 10 109 9.0 12.0 10.5 0.9 150 chr2L 20336052 intron spir + chr2L 20336127 intron spir + chr2L 20336202 intron spir + chr2L_10_20335001 chr2L_20335001 RAL-340_100b 755 chr2L 20336095 20336099 chr2L 20336158 20336209 4 98 8.0 11.5 9.8 0.4 114 chr2L 20336095 intron spir + chr2L 20336152 intron spir + chr2L 20336209 intron spir + chr2L_4_20335001 chr2L_20335001 RAL-340_100b 756 chr2L 20352734 20352764 chr2L 20352832 20352867 10 96 12.5 13.5 13.0 0.7 133 chr2L 20352734 intron RtGEF + chr2L 20352800 intron RtGEF + chr2L 20352867 intron RtGEF + chr2L_10_20350001 chr2L_20350001 RAL-340_100b 757 chr2L 19479165 19479165 chr2L 20360641 20360644 4 881478 39.0 31.5 35.2 0.1 881479 chr2L 19479165 intergenic not near genes chr2L 19919904 intron,5` UTR sick +,CR43828 + chr2L 20360644 exon RtGEF + chr2L_4_19915001 chr2L_19915001 RAL-340_100b 758 chr2L 20372206 20372243 chr2L 20372471 20372509 pogo 23 264 1.0 15.5 8.2 2.5 303 chr2L 20372206 intergenic Ugt37a1 - chr2L 20372358 intergenic Ugt37a1 - chr2L 20372509 exon Ugt37a1 - chr2L_23_20370001 chr2L_20370001 RAL-340_100b 759 chr2L 20383424 20383448 chr2L 20383533 20383561 10 115 19.0 8.0 13.5 0.7 137 chr2L 20383424 intergenic not near genes chr2L 20383492 intergenic not near genes chr2L 20383561 intergenic not near genes chr2L_10_20380001 chr2L_20380001 RAL-340_100b 760 chr2L 20383451 20383456 chr2L 20383568 20383573 5 117 18.0 17.5 17.8 0.3 122 chr2L 20383451 intergenic not near genes chr2L 20383512 intergenic not near genes chr2L 20383573 intergenic not near genes chr2L_5_20380001 chr2L_20380001 RAL-340_100b 761 chr2L 20383460 20383469 chr2L 20383566 20383586 8 116 14.5 17.0 15.8 0.5 126 chr2L 20383460 intergenic not near genes chr2L 20383523 intergenic not near genes chr2L 20383586 intergenic not near genes chr2L_8_20380001 chr2L_20380001 RAL-340_100b 762 chr2L 20396828 20396878 chr2L 20396970 20397020 12 142 5.5 13.0 9.2 1.2 192 chr2L 20396828 intron CG10947 - chr2L 20396924 intron CG10947 - chr2L 20397020 intron CG10947 - chr2L_12_20395001 chr2L_20395001 RAL-340_100b 763 chr2L 20400346 20400382 chr2L 20400490 20400526 17 143 5.0 4.5 4.8 2.9 180 chr2L 20400346 intron CG10947 - chr2L 20400436 intron CG10947 - chr2L 20400526 intron CG10947 - chr2L_17_20400001 chr2L_20400001 RAL-340_100b 764 chr2L 20498665 20498707 chr2L 20498789 20498831 20 123 9.5 11.0 10.2 1.8 166 chr2L 20498665 intergenic not near genes chr2L 20498748 intergenic not near genes chr2L 20498831 intergenic not near genes chr2L_20_20495001 chr2L_20495001 RAL-340_100b 765 chr2L 20538052 20538100 chr2L 20538144 20538161 23 96 8.0 6.5 7.2 2.8 109 chr2L 20538052 intergenic not near genes chr2L 20538106 intergenic not near genes chr2L 20538161 intergenic not near genes chr2L_23_20535001 chr2L_20535001 RAL-340_100b 766 chr2L 20568637 20568650 chr2L 20569052 20569065 X-element 6 415 11.0 5.0 8.0 0.7 428 chr2L 20568637 intron CR45347 + chr2L 20568851 intron CR45347 + chr2L 20569065 intron CR45347 + chr2L_6_20565001 chr2L_20565001 RAL-340_100b 767 chr2L 20568662 20568683 chr2L 20569055 20569098 X-element 10 411 4.5 6.0 5.2 1.6 436 chr2L 20568662 intron CR45347 + chr2L 20568880 intron CR45347 + chr2L 20569098 intron CR45347 + chr2L_10_20565001 chr2L_20565001 RAL-340_100b 768 chr2L 20576195 20576240 chr2L 20583688 20583733 blood 16 7490 13.0 12.5 12.8 1.2 7538 chr2L 20576195 intergenic CR45347 + chr2L 20579964 intergenic not near genes chr2L 20583733 3` UTR CR44909 - chr2L_16_20575001 chr2L_20575001 RAL-340_100b 769 chr2L 20601761 20601814 chr2L 20601864 20601895 39 99 9.0 4.0 6.5 5.2 134 chr2L 20601761 intron CR44909 - chr2L 20601828 intron CR44909 - chr2L 20601895 intron CR44909 - chr2L_39_20600001 chr2L_20600001 RAL-340_100b 770 chr2L 20607637 20607662 chr2L 20607719 20607748 12 94 13.0 10.0 11.5 1.0 111 chr2L 20607637 intron,3` UTR CR44909 -,CR43608 - chr2L 20607692 intron,3` UTR CR44909 -,CR43608 - chr2L 20607748 intron,3` UTR CR44909 -,CR43608 - chr2L_12_20605001 chr2L_20605001 RAL-340_100b 771 chr2L 20607666 20607671 chr2L 20607717 20607730 5 73 11.0 9.5 10.2 0.4 64 chr2L 20607666 intron,3` UTR CR44909 -,CR43608 - chr2L 20607698 intron,3` UTR CR44909 -,CR43608 - chr2L 20607730 intron,3` UTR CR44909 -,CR43608 - chr2L_5_20605001 chr2L_20605001 RAL-340_100b 772 chr2L 20629166 20629224 chr2L 20629280 20629338 23 111 4.0 5.0 4.5 4.2 172 chr2L 20629166 intergenic not near genes chr2L 20629252 intergenic not near genes chr2L 20629338 intergenic not near genes chr2L_23_20625001 chr2L_20625001 RAL-340_100b 773 chr2L 20638378 20638394 chr2L 20638496 20638512 11 116 11.5 24.5 18.0 0.6 134 chr2L 20638378 intergenic not near genes chr2L 20638445 intergenic not near genes chr2L 20638512 intergenic not near genes chr2L_11_20635001 chr2L_20635001 RAL-340_100b 774 chr2L 20668663 20668707 chr2L 20668764 20668808 11 98 16.0 16.0 16.0 0.6 145 chr2L 20668663 intron CG31678 - chr2L 20668736 intron CG31678 - chr2L 20668808 intron CG31678 - chr2L_11_20665001 chr2L_20665001 RAL-340_100b 775 chr2L 20674802 20674856 chr2L 20674912 20674941 9 102 9.0 0.0 4.5 1.6 139 chr2L 20674802 intron CG31678 - chr2L 20674872 intron CG31678 - chr2L 20674941 intron CG31678 - chr2L_9_20670001 chr2L_20670001 RAL-340_100b 776 chr2L 20687064 20687113 chr2L 20687168 20687217 34 103 9.5 13.5 11.5 2.7 153 chr2L 20687064 exon Hr38 - chr2L 20687140 intron Hr38 - chr2L 20687217 intron Hr38 - chr2L_34_20685001 chr2L_20685001 RAL-340_100b 777 chr2L 20835813 20835838 chr2L 20836523 20836580 Quasimodo 15 730 5.0 7.0 6.0 2.1 767 chr2L 20835813 5` UTR Oseg5 - chr2L 20836196 intergenic Oseg5 -,Spn38F - chr2L 20836580 intergenic Spn38F - chr2L_15_20835001 chr2L_20835001 RAL-340_100b 778 chr2L 20891519 20891546 chr2L 20896635 20896672 jockey 10 5123 10.5 5.5 8.0 1.1 5153 chr2L 20891519 intron,intron CG43739 -,sky - chr2L 20894096 intron,intron CG43739 -,sky - chr2L 20896672 intron,intron CG43739 -,sky - chr2L_10_20890001 chr2L_20890001 RAL-340_100b 779 chr2L 9723025 9723026 chr2L 20917597 20917600 4 11194574 88.0 13.0 50.5 0.1 11194575 chr2L 9723025 intron Nckx30C - chr2L 15320312 intergenic not near genes chr2L 20917600 intron,intron CG43739 -,sky - chr2L_4_15320001 chr2L_15320001 RAL-340_100b 780 chr2L 20976628 20976670 chr2L 20981468 20981510 X-element 10 4839 15.0 11.0 13.0 0.7 4882 chr2L 20976628 intron CG42238 - chr2L 20979069 intron CG42238 - chr2L 20981510 intron CG42238 - chr2L_10_20975001 chr2L_20975001 RAL-340_100b 781 chr2L 21020252 21020286 chr2L 21023954 21023983 NOF 11 3701 13.0 13.5 13.2 0.8 3731 chr2L 21020252 intron CG42238 - chr2L 21022118 intron CG42238 - chr2L 21023983 intron CG42238 - chr2L_11_21020001 chr2L_21020001 RAL-340_100b 782 chr2L 21020287 21020306 chr2L 21023949 21024006 NOF 13 3694 6.0 12.0 9.0 1.3 3719 chr2L 21020287 intron CG42238 - chr2L 21022146 intron CG42238 - chr2L 21024006 intron CG42238 - chr2L_13_21020001 chr2L_21020001 RAL-340_100b 783 chr2L 21034122 21034174 chr2L 21034228 21034280 21 103 5.0 10.0 7.5 2.5 158 chr2L 21034122 intron CG42238 - chr2L 21034201 intron CG42238 - chr2L 21034280 intron CG42238 - chr2L_21_21030001 chr2L_21030001 RAL-340_100b 784 chr2L 21041134 21041163 chr2L 21049394 21049437 Tirant 13 8279 5.5 6.0 5.8 1.9 8303 chr2L 21041134 intron CG42238 - chr2L 21045286 intron CG42238 - chr2L 21049437 intron CG42238 - chr2L_13_21045001 chr2L_21045001 RAL-340_100b 785 chr2L 21074903 21074941 chr2L 21075009 21075057 12 114 9.5 6.5 8.0 1.3 154 chr2L 21074903 intergenic not near genes chr2L 21074980 intergenic tadr + chr2L 21075057 intergenic tadr + chr2L_12_21070001 chr2L_21070001 RAL-340_100b 786 chr2L 21105998 21106049 chr2L 21106107 21106158 23 102 5.0 8.5 6.8 2.9 160 chr2L 21105998 intron Nhe2 + chr2L 21106078 intron Nhe2 + chr2L 21106158 intron Nhe2 + chr2L_23_21105001 chr2L_21105001 RAL-340_100b 787 chr2L 21215631 21215687 chr2L 21215729 21215788 24 99 7.0 6.0 6.5 3.2 157 chr2L 21215631 intron Atg18b - chr2L 21215710 intron Atg18b - chr2L 21215788 intron Atg18b - chr2L_24_21215001 chr2L_21215001 RAL-340_100b 788 chr2L 21240069 21240120 chr2L 21240200 21240251 18 126 13.0 15.0 14.0 1.2 182 chr2L 21240069 intron Hr39 + chr2L 21240160 intron Hr39 + chr2L 21240251 intron Hr39 + chr2L_18_21240001 chr2L_21240001 RAL-340_100b 789 chr2L 21240918 21240962 chr2L 21241022 21241061 22 104 14.5 11.5 13.0 1.6 143 chr2L 21240918 intron Hr39 + chr2L 21240990 intron Hr39 + chr2L 21241061 intron Hr39 + chr2L_22_21240001 chr2L_21240001 RAL-340_100b 790 chr2L 21286581 21286621 chr2L 21286684 21286724 9 98 8.0 6.5 7.2 1.1 143 chr2L 21286581 exon Mio - chr2L 21286652 intron Mio - chr2L 21286724 intron Mio - chr2L_9_21285001 chr2L_21285001 RAL-340_100b 791 chr2L 21307444 21307499 chr2L 21307551 21307606 13 99 10.0 3.0 6.5 1.7 162 chr2L 21307444 intron Mio - chr2L 21307525 intron Mio - chr2L 21307606 intron Mio - chr2L_13_21305001 chr2L_21305001 RAL-340_100b 792 chr2L 21326911 21326959 chr2L 21327002 21327045 16 98 7.0 5.5 6.2 2.2 134 chr2L 21326911 5` UTR CR42696 + chr2L 21326978 5` UTR CR42696 + chr2L 21327045 5` UTR CR42696 + chr2L_16_21325001 chr2L_21325001 RAL-340_100b 793 chr2L 21347535 21347571 chr2L 21355025 21355068 blood 15 7496 8.0 5.0 6.5 2.0 7533 chr2L 21347535 intron Tsp39D + chr2L 21351302 intron Tsp39D + chr2L 21355068 intron Tsp39D + chr2L_15_21350001 chr2L_21350001 RAL-340_100b 794 chr2L 21392113 21392127 chr2L 21392229 21392243 5 116 5.0 12.0 8.5 0.5 130 chr2L 21392113 3` UTR nrv3 + chr2L 21392178 3` UTR nrv3 + chr2L 21392243 3` UTR nrv3 + chr2L_5_21390001 chr2L_21390001 RAL-340_100b 795 chr2L 21597033 21597063 chr2L 21604771 21604814 roo 18 7761 6.5 9.0 7.8 2.0 7781 chr2L 21597033 intergenic not near genes chr2L 21600924 intergenic not near genes chr2L 21604814 intergenic not near genes chr2L_18_21600001 chr2L_21600001 RAL-340_100b 796 chr2L 21653168 21653221 chr2L 21656496 21656550 invader4 17 3325 8.0 11.5 9.8 1.6 3382 chr2L 21653168 intergenic not near genes chr2L 21654859 intergenic not near genes chr2L 21656550 intergenic not near genes chr2L_17_21650001 chr2L_21650001 RAL-340_100b 797 chr2L 21691802 21691841 chr2L 21698297 21698325 Burdock 13 6493 10.0 0.5 5.2 2.1 6523 chr2L 21691802 intron CG31619 + chr2L 21695064 intron CG31619 + chr2L 21698325 intron CG31619 + chr2L_13_21695001 chr2L_21695001 RAL-340_100b 798 chr2L 21750076 21750131 chr2L 21750421 21750429 17 337 6.5 7.5 7.0 2.1 353 chr2L 21750076 intron step - chr2L 21750252 intron step - chr2L 21750429 intron step - chr2L_17_21750001 chr2L_21750001 RAL-340_100b 799 chr2L 21754634 21754682 chr2L 21754740 21754772 21 104 8.5 8.0 8.2 2.3 138 chr2L 21754634 intron step - chr2L 21754703 intron step - chr2L 21754772 intron step - chr2L_21_21750001 chr2L_21750001 RAL-340_100b 800 chr2L 21755470 21755521 chr2L 21755619 21755639 19 145 6.0 8.0 7.0 2.4 169 chr2L 21755470 intron step - chr2L 21755554 intron step - chr2L 21755639 intron step - chr2L_19_21755001 chr2L_21755001 RAL-340_100b 801 chr2L 21781524 21781543 chr2L 21781639 21781658 6 115 27.0 11.0 19.0 0.3 134 chr2L 21781524 intron CG31612 - chr2L 21781591 intron CG31612 - chr2L 21781658 intron CG31612 - chr2L_6_21780001 chr2L_21780001 RAL-340_100b 802 chr2L 21841787 21841842 chr2L 21841903 21841955 31 109 12.0 10.0 11.0 2.6 168 chr2L 21841787 intergenic not near genes chr2L 21841871 intergenic not near genes chr2L 21841955 intergenic not near genes chr2L_31_21840001 chr2L_21840001 RAL-340_100b 803 chr2L 21933899 21933922 chr2L 21934004 21934016 5 103 8.5 11.0 9.8 0.5 117 chr2L 21933899 intergenic not near genes chr2L 21933958 intergenic not near genes chr2L 21934016 intergenic not near genes chr2L_5_21930001 chr2L_21930001 RAL-340_100b 804 chr2L 21969335 21969366 chr2L 21969425 21969467 10 99 4.5 5.5 5.0 1.7 132 chr2L 21969335 intergenic not near genes chr2L 21969401 intergenic not near genes chr2L 21969467 intergenic not near genes chr2L_10_21965001 chr2L_21965001 RAL-340_100b 805 chr2L 21981661 21981713 chr2L 21990851 21990887 roo 30 9185 8.5 7.5 8.0 3.3 9226 chr2L 21981661 exon CG2528 - chr2L 21986274 intron CG2528 - chr2L 21990887 exon CG2528 - chr2L_30_21985001 chr2L_21985001 RAL-340_100b 806 chr2L 22001623 22001673 chr2L 22001724 22001749 12 95 4.0 2.0 3.0 3.0 126 chr2L 22001623 intergenic not near genes chr2L 22001686 intergenic not near genes chr2L 22001749 intergenic not near genes chr2L_12_22000001 chr2L_22000001 RAL-340_100b 807 chr2L 22049762 22049781 chr2L 22049912 22049914 7 147 21.0 11.0 16.0 0.4 152 chr2L 22049762 intergenic not near genes chr2L 22049838 intergenic not near genes chr2L 22049914 intergenic not near genes chr2L_7_22045001 chr2L_22045001 RAL-340_100b 808 chr2L 22058734 22058788 chr2L 22059568 22059622 16 831 2.5 9.5 6.0 2.3 888 chr2L 22058734 intergenic not near genes chr2L 22059178 intergenic not near genes chr2L 22059622 intergenic not near genes chr2L_16_22055001 chr2L_22055001 RAL-340_100b 809 chr2L 22152814 22152869 chr2L 22152915 22152960 21 96 5.5 8.0 6.8 2.7 146 chr2L 22152814 intron CG42748 + chr2L 22152887 intron CG42748 + chr2L 22152960 intron CG42748 + chr2L_21_22150001 chr2L_22150001 RAL-340_100b 810 chr2L 22192018 22192023 chr2L 22192129 22192137 4 113 20.5 14.0 17.2 0.2 119 chr2L 22192018 intron Ir40a - chr2L 22192078 intron Ir40a - chr2L 22192137 intron Ir40a - chr2L_4_22190001 chr2L_22190001 RAL-340_100b 811 chr2L 22192034 22192056 chr2L 22192113 22192170 11 110 8.5 6.5 7.5 1.3 136 chr2L 22192034 intron Ir40a - chr2L 22192102 intron Ir40a - chr2L 22192170 intron Ir40a - chr2L_11_22190001 chr2L_22190001 RAL-340_100b 812 chr2L 22197863 22197909 chr2L 22198087 22198123 12 222 3.5 4.0 3.8 2.5 260 chr2L 22197863 intron Ir40a - chr2L 22197993 intron Ir40a - chr2L 22198123 intron Ir40a - chr2L_12_22195001 chr2L_22195001 RAL-340_100b 813 chr2L 22212126 22212140 chr2L 22212690 22212712 4 570 4.5 7.5 6.0 0.6 586 chr2L 22212126 intron Ir40a - chr2L 22212419 intron Ir40a - chr2L 22212712 intron Ir40a - chr2L_4_22210001 chr2L_22210001 RAL-340_100b 814 chr2L 22212143 22212155 chr2L 22212687 22212723 6 567 2.0 6.0 4.0 1.2 580 chr2L 22212143 intron Ir40a - chr2L 22212433 intron Ir40a - chr2L 22212723 intron Ir40a - chr2L_6_22210001 chr2L_22210001 RAL-340_100b 815 chr2L 22215883 22215930 chr2L 22215994 22216041 37 108 6.0 6.0 6.0 5.3 158 chr2L 22215883 intergenic not near genes chr2L 22215962 intergenic not near genes chr2L 22216041 intergenic not near genes chr2L_37_22215001 chr2L_22215001 RAL-340_100b 816 chr2L 22239411 22239458 chr2L 22239507 22239509 21 98 12.0 11.0 11.5 1.7 98 chr2L 22239411 intron CR43765 - chr2L 22239460 3` UTR CR43765 - chr2L 22239509 3` UTR CR43765 - chr2L_21_22235001 chr2L_22235001 RAL-340_100b 817 chr2L 22258595 22258623 chr2L 22260744 22260772 G6 20 2148 28.0 15.5 21.8 0.9 2177 chr2L 22258595 intergenic Tif-IA + chr2L 22259684 intergenic not near genes chr2L 22260772 intergenic not near genes chr2L_20_22255001 chr2L_22255001 RAL-340_100b 818 chr2L 22258626 22258647 chr2L 22260737 22260778 G6 18 2142 16.0 13.0 14.5 1.2 2152 chr2L 22258626 intergenic Tif-IA + chr2L 22259702 intergenic not near genes chr2L 22260778 intergenic not near genes chr2L_18_22255001 chr2L_22255001 RAL-340_100b 819 chr2L 22294354 22294382 chr2L 22294460 22294495 12 110 1.0 12.5 6.8 1.5 141 chr2L 22294354 intergenic not near genes chr2L 22294424 intergenic not near genes chr2L 22294495 intergenic not near genes chr2L_12_22290001 chr2L_22290001 RAL-340_100b 820 chr2L 22357032 22357079 chr2L 22357203 22357250 14 165 8.0 6.5 7.2 1.7 218 chr2L 22357032 5` UTR CG17018 + chr2L 22357141 intron CG17018 + chr2L 22357250 intron CG17018 + chr2L_14_22355001 chr2L_22355001 RAL-340_100b 821 chr2L 9723025 9723026 chr2L 22522654 22522658 23 12799630 88.0 35.0 61.5 0.4 12799633 chr2L 9723025 intron Nckx30C - chr2L 16122842 intergenic not near genes chr2L 22522658 intergenic not near genes chr2L_23_16120001 chr2L_16120001 RAL-340_100b 822 chr2L 22548922 22548938 chr2L 22550161 22550188 1360 7 1247 0.0 14.0 7.0 0.9 1266 chr2L 22548922 intergenic CG17490 + chr2L 22549555 intergenic not near genes chr2L 22550188 intergenic CG17493 + chr2L_7_22545001 chr2L_22545001 RAL-340_100b 823 chr2L 22558371 22558422 chr2L 22558707 22558744 23 334 9.5 17.0 13.2 1.6 373 chr2L 22558371 intergenic not near genes chr2L 22558558 intergenic not near genes chr2L 22558744 intergenic not near genes chr2L_23_22555001 chr2L_22555001 RAL-340_100b 824 chr2L 22581948 22581985 chr2L 22583762 22583783 S-element 15 1812 9.0 1.0 5.0 2.5 1835 chr2L 22581948 intron CG17494 + chr2L 22582866 intron CG17494 + chr2L 22583783 intron CG17494 + chr2L_15_22580001 chr2L_22580001 RAL-340_100b 825 chr2L 22716421 22716479 chr2L 22717847 22717905 INE-1 15 1426 9.5 6.5 8.0 1.7 1484 chr2L 22716421 intron CG40006 - chr2L 22717163 intron CG40006 - chr2L 22717905 intron CG40006 - chr2L_15_22715001 chr2L_22715001 RAL-340_100b 826 chr2L 22776400 22776436 chr2L 22778214 22778250 S-element 14 1814 8.0 9.5 8.8 1.4 1850 chr2L 22776400 intergenic not near genes chr2L 22777325 intergenic not near genes chr2L 22778250 intergenic not near genes chr2L_14_22775001 chr2L_22775001 RAL-340_100b 827 chr2L 22776443 22776451 chr2L 22778209 22778265 S-element 9 1806 5.5 8.0 6.8 1.2 1822 chr2L 22776443 intergenic not near genes chr2L 22777354 intergenic not near genes chr2L 22778265 intergenic not near genes chr2L_9_22775001 chr2L_22775001 RAL-340_100b 828 chr2L 22985588 22985641 chr2L 22985720 22985773 32 128 12.0 13.5 12.8 2.3 185 chr2L 22985588 intron cta + chr2L 22985680 intron cta + chr2L 22985773 intron cta + chr2L_32_22985001 chr2L_22985001 RAL-340_100b 829 chr2L 22985642 22985644 chr2L 22985719 22985776 5 110 11.0 13.0 12.0 0.4 134 chr2L 22985642 intron cta + chr2L 22985709 intron cta + chr2L 22985776 intron cta + chr2L_5_22985001 chr2L_22985001 RAL-340_100b 830 chr2L 23168869 23168887 chr2L 23168935 23168978 10 92 3.0 0.0 1.5 4.0 109 chr2L 23168869 intron,5` UTR CG12567 -,mir-2490 + chr2L 23168924 intron CG12567 - chr2L 23168978 intron CG12567 - chr2L_10_23165001 chr2L_23165001 RAL-340_100b 831 chr2L 23233890 23233923 chr2L 23233985 23234027 4 101 40.5 36.5 38.5 0.1 137 chr2L 23233890 intergenic not near genes chr2L 23233958 intergenic not near genes chr2L 23234027 intergenic not near genes chr2L_4_23230001 chr2L_23230001 RAL-340_100b 832 chr2R 469946 469980 chr2R 473201 473246 F-element 10 3264 6.5 8.0 7.2 1.2 3300 chr2R 469946 intergenic not near genes chr2R 471596 intergenic not near genes chr2R 473246 intergenic not near genes chr2R_10_470001 chr2R_470001 RAL-340_100b 833 chr2R 528624 528677 chr2R 528741 528794 25 109 8.0 4.5 6.2 3.5 170 chr2R 528624 intron CG40378 + chr2R 528709 intron CG40378 + chr2R 528794 intron CG40378 + chr2R_25_525001 chr2R_525001 RAL-340_100b 834 chr2R 529316 529343 chr2R 537966 537987 Max-element 8 8646 4.5 8.0 6.2 1.1 8671 chr2R 529316 intron CG40378 + chr2R 533652 intron CG40378 + chr2R 537987 intron CG40378 + chr2R_8_530001 chr2R_530001 RAL-340_100b 835 chr2R 552743 552787 chr2R 553986 553999 1360 7 1236 4.0 6.5 5.2 1.1 1256 chr2R 552743 intron CG40378 + chr2R 553371 intron CG40378 + chr2R 553999 intron CG40378 + chr2R_7_550001 chr2R_550001 RAL-340_100b 836 chr2R 952408 952448 chr2R 952556 952596 6 140 4.0 5.5 4.8 1.0 188 chr2R 952408 intergenic not near genes chr2R 952502 intergenic not near genes chr2R 952596 intergenic not near genes chr2R_6_950001 chr2R_950001 RAL-340_100b 837 chr2R 1010401 1010402 chr2R 4297980 4298004 mdg1 4 3287586 104.5 108.5 106.5 0.0 3287603 chr2R 1010401 intergenic not near genes chr2R 2654202 intergenic not near genes chr2R 4298004 intergenic not near genes chr2R_4_2650001 chr2R_2650001 RAL-340_100b 838 chr2R 1320204 1320204 chr2R 21358403 21358403 9 20038199 110.0 18.5 64.2 0.1 20038199 chr2R 1320204 intergenic not near genes chr2R 11339304 exon zetaTry - chr2R 21358403 intron cv-2 - chr2R_9_11335001 chr2R_11335001 RAL-340_100b 839 chr2R 1365851 1365856 chr2R 1365974 1365993 4 134 14.5 3.0 8.8 0.4 142 chr2R 1365851 intron l(2)41Ab + chr2R 1365922 intron l(2)41Ab + chr2R 1365993 intron l(2)41Ab + chr2R_4_1365001 chr2R_1365001 RAL-340_100b 840 chr2R 1365857 1365894 chr2R 1365973 1366031 8 134 8.5 3.0 5.8 1.2 174 chr2R 1365857 intron l(2)41Ab + chr2R 1365944 intron l(2)41Ab + chr2R 1366031 intron l(2)41Ab + chr2R_8_1365001 chr2R_1365001 RAL-340_100b 841 chr2R 1516584 1516602 chr2R 1521337 1521355 1731 16 4752 16.5 14.5 15.5 1.0 4771 chr2R 1516584 exon Maf1 - chr2R 1518970 intron Maf1 - chr2R 1521355 5` UTR Maf1 - chr2R_16_1515001 chr2R_1515001 RAL-340_100b 842 chr2R 1880679 1880727 chr2R 5639655 5639656 4 3758959 31.5 36.5 34.0 0.1 3758977 chr2R 1880679 intron CG17684 - chr2R 3760168 intergenic not near genes chr2R 5639656 intergenic not near genes chr2R_4_3760001 chr2R_3760001 RAL-340_100b 843 chr2R 2015112 2015165 chr2R 2015214 2015259 26 100 8.5 4.0 6.2 3.6 147 chr2R 2015112 intron CG17684 - chr2R 2015186 intron CG17684 - chr2R 2015259 intron CG17684 - chr2R_26_2015001 chr2R_2015001 RAL-340_100b 844 chr2R 2110481 2110499 chr2R 2118064 2118082 17.6 7 7582 23.0 8.0 15.5 0.4 7601 chr2R 2110481 intron CG17684 - chr2R 2114282 intron CG17684 - chr2R 2118082 intron CG17684 - chr2R_7_2110001 chr2R_2110001 RAL-340_100b 845 chr2R 2498961 2499016 chr2R 2508133 2508184 roo 24 9169 8.5 4.0 6.2 3.3 9223 chr2R 2498961 intron MFS17 - chr2R 2503572 intron MFS17 - chr2R 2508184 intron MFS17 - chr2R_24_2500001 chr2R_2500001 RAL-340_100b 846 chr2R 2508283 2508334 chr2R 2508446 2508486 11 159 3.0 7.0 5.0 1.8 203 chr2R 2508283 intron MFS17 - chr2R 2508384 intron MFS17 - chr2R 2508486 intron MFS17 - chr2R_11_2505001 chr2R_2505001 RAL-340_100b 847 chr2R 2746919 2746944 chr2R 2747002 2747047 4 87 6.5 9.0 7.8 0.5 128 chr2R 2746919 intergenic not near genes chr2R 2746983 intergenic not near genes chr2R 2747047 intergenic not near genes chr2R_4_2745001 chr2R_2745001 RAL-340_100b 848 chr2R 2875363 2875386 chr2R 2878897 2878926 HMS-Beagle 4 3538 23.5 20.5 22.0 0.2 3563 chr2R 2875363 intergenic not near genes chr2R 2877144 intergenic not near genes chr2R 2878926 intergenic not near genes chr2R_4_2875001 chr2R_2875001 RAL-340_100b 849 chr2R 2953686 2953733 chr2R 17834562 17834562 4 14880854 25.0 27.5 26.2 0.1 14880876 chr2R 2953686 intron Scp1 - chr2R 10394124 intron CG42732 - chr2R 17834562 intron grh + chr2R_4_10390001 chr2R_10390001 RAL-340_100b 850 chr2R 3144068 3144110 chr2R 3393371 3393413 Doc 16 249302 35.5 15.5 25.5 0.6 249345 chr2R 3144068 intron CG42596 + chr2R 3268740 intergenic not near genes chr2R 3393413 intergenic not near genes chr2R_16_3265001 chr2R_3265001 RAL-340_100b 851 chr2R 3291923 3292102 chr2R 3915117 3915282 6 623183 12.0 37.5 24.8 0.2 623359 chr2R 3291923 intergenic not near genes chr2R 3603602 intergenic not near genes chr2R 3915282 intron uex - chr2R_6_3600001 chr2R_3600001 RAL-340_100b 852 chr2R 3532599 3532628 chr2R 3536061 3536096 Doc 9 3467 2.5 2.5 2.5 2.6 3497 chr2R 3532599 intergenic not near genes chr2R 3534348 intergenic not near genes chr2R 3536096 intergenic not near genes chr2R_9_3530001 chr2R_3530001 RAL-340_100b 853 chr2R 3877475 3877508 chr2R 3877738 3877741 6 256 17.0 21.0 19.0 0.3 266 chr2R 3877475 intergenic not near genes chr2R 3877608 intergenic not near genes chr2R 3877741 intergenic not near genes chr2R_6_3875001 chr2R_3875001 RAL-340_100b 854 chr2R 3927683 3927687 chr2R 4854350 4854366 gypsy10 4 926678 36.5 19.5 28.0 0.1 926683 chr2R 3927683 intron uex - chr2R 4391024 intron Gprk1 - chr2R 4854366 intergenic not near genes chr2R_4_4390001 chr2R_4390001 RAL-340_100b 855 chr2R 4312939 4312982 chr2R 4313038 4313091 15 103 6.0 6.5 6.2 2.1 152 chr2R 4312939 intergenic not near genes chr2R 4313015 intergenic not near genes chr2R 4313091 intergenic not near genes chr2R_15_4310001 chr2R_4310001 RAL-340_100b 856 chr2R 4602817 4602873 chr2R 4603197 4603245 29 371 9.5 11.0 10.2 2.6 428 chr2R 4602817 intron p120ctn + chr2R 4603031 intron p120ctn + chr2R 4603245 intron p120ctn + chr2R_29_4600001 chr2R_4600001 RAL-340_100b 857 chr2R 4622931 4622962 chr2R 4624114 4624146 1360 6 1181 12.0 11.0 11.5 0.5 1215 chr2R 4622931 intergenic CR44101 - chr2R 4623538 intergenic not near genes chr2R 4624146 intergenic not near genes chr2R_6_4620001 chr2R_4620001 RAL-340_100b 858 chr2R 4622970 4622987 chr2R 4624109 4624116 1360 8 1148 6.0 10.5 8.2 0.9 1146 chr2R 4622970 intergenic CR44101 - chr2R 4623543 intergenic not near genes chr2R 4624116 intergenic not near genes chr2R_8_4620001 chr2R_4620001 RAL-340_100b 859 chr2R 4624619 4624669 chr2R 4626549 4626599 Bica 28 1926 9.0 16.0 12.5 2.1 1980 chr2R 4624619 intergenic not near genes chr2R 4625609 intergenic not near genes chr2R 4626599 intergenic not near genes chr2R_28_4625001 chr2R_4625001 RAL-340_100b 860 chr2R 4634160 4634186 chr2R 4634234 4634280 17 98 11.0 4.5 7.8 1.9 120 chr2R 4634160 intergenic not near genes chr2R 4634220 intergenic not near genes chr2R 4634280 intergenic not near genes chr2R_17_4630001 chr2R_4630001 RAL-340_100b 861 chr2R 4702480 4702505 chr2R 4702613 4702662 11 158 9.5 9.5 9.5 1.0 182 chr2R 4702480 intron Nipped-B - chr2R 4702571 intron Nipped-B - chr2R 4702662 intron Nipped-B - chr2R_11_4700001 chr2R_4700001 RAL-340_100b 862 chr2R 4750318 4750330 chr2R 4751500 4751508 1360 5 1181 19.0 11.5 15.2 0.3 1190 chr2R 4750318 intron conu + chr2R 4750913 intron conu + chr2R 4751508 intron conu + chr2R_5_4750001 chr2R_4750001 RAL-340_100b 863 chr2R 4750331 4750376 chr2R 4751498 4751558 1360 24 1176 10.5 10.5 10.5 2.1 1227 chr2R 4750331 intron conu + chr2R 4750944 intron conu + chr2R 4751558 intron conu + chr2R_24_4750001 chr2R_4750001 RAL-340_100b 864 chr2R 4825123 4825123 chr2R 22311215 22311217 4 17486093 22.0 27.5 24.8 0.2 17486094 chr2R 4825123 intergenic not near genes chr2R 13568170 intergenic not near genes chr2R 22311217 intron wdp - chr2R_4_13565001 chr2R_13565001 RAL-340_100b 865 chr2R 4838847 4838900 chr2R 4840395 4840448 transib2 14 1542 9.5 12.0 10.8 1.2 1601 chr2R 4838847 intergenic not near genes chr2R 4839648 intergenic not near genes chr2R 4840448 intergenic not near genes chr2R_14_4835001 chr2R_4835001 RAL-340_100b 866 chr2R 4870728 4870743 chr2R 4871263 4871279 R1A1-element 9 536 9.5 11.0 10.2 0.8 551 chr2R 4870728 intergenic not near genes chr2R 4871004 intergenic not near genes chr2R 4871279 intergenic not near genes chr2R_9_4870001 chr2R_4870001 RAL-340_100b 867 chr2R 4878657 4878704 chr2R 4887666 4887715 X-element 12 9006 6.0 12.0 9.0 1.2 9058 chr2R 4878657 intergenic not near genes chr2R 4883186 intergenic not near genes chr2R 4887715 intergenic not near genes chr2R_12_4880001 chr2R_4880001 RAL-340_100b 868 chr2R 4940948 4940968 chr2R 4943423 4943430 7 2469 29.5 35.0 32.2 0.2 2482 chr2R 4940948 intron Ir41a + chr2R 4942189 intron Ir41a + chr2R 4943430 intron Ir41a + chr2R_7_4940001 chr2R_4940001 RAL-340_100b 869 chr2R 4970234 4970274 chr2R 4970333 4970368 13 100 11.5 15.0 13.2 0.9 134 chr2R 4970234 intron Ir41a + chr2R 4970301 intron Ir41a + chr2R 4970368 intron Ir41a + chr2R_13_4970001 chr2R_4970001 RAL-340_100b 870 chr2R 5009184 5009189 chr2R 5009253 5009261 4 82 4.5 1.5 3.0 1.0 77 chr2R 5009184 intron Ir41a + chr2R 5009222 intron Ir41a + chr2R 5009261 intron Ir41a + chr2R_4_5005001 chr2R_5005001 RAL-340_100b 871 chr2R 5009192 5009206 chr2R 5009252 5009297 9 83 4.0 1.5 2.8 2.4 105 chr2R 5009192 intron Ir41a + chr2R 5009244 intron Ir41a + chr2R 5009297 intron Ir41a + chr2R_9_5005001 chr2R_5005001 RAL-340_100b 872 chr2R 5019256 5019310 chr2R 5019367 5019421 23 110 4.5 9.5 7.0 2.9 165 chr2R 5019256 intron Ir41a + chr2R 5019338 intron Ir41a + chr2R 5019421 intron Ir41a + chr2R_23_5015001 chr2R_5015001 RAL-340_100b 873 chr2R 5038501 5038531 chr2R 5039323 5039328 12 817 13.0 6.5 9.8 1.1 827 chr2R 5038501 intergenic not near genes chr2R 5038914 intergenic not near genes chr2R 5039328 intergenic not near genes chr2R_12_5035001 chr2R_5035001 RAL-340_100b 874 chr2R 5040748 5040765 chr2R 5041255 5041280 6 506 0.5 11.5 6.0 0.9 532 chr2R 5040748 intergenic not near genes chr2R 5041014 intergenic not near genes chr2R 5041280 intergenic not near genes chr2R_6_5040001 chr2R_5040001 RAL-340_100b 875 chr2R 5075211 5075239 chr2R 5075355 5075374 11 149 8.0 0.0 4.0 2.2 163 chr2R 5075211 intergenic not near genes chr2R 5075292 intergenic not near genes chr2R 5075374 intergenic not near genes chr2R_11_5075001 chr2R_5075001 RAL-340_100b 876 chr2R 5075240 5075244 chr2R 5075756 5075760 5 516 7.5 12.5 10.0 0.5 520 chr2R 5075240 intergenic not near genes chr2R 5075500 intergenic not near genes chr2R 5075760 intergenic not near genes chr2R_5_5075001 chr2R_5075001 RAL-340_100b 877 chr2R 5075250 5075370 chr2R 5075760 5075805 24 456 0.0 13.5 6.8 3.1 555 chr2R 5075250 intergenic not near genes chr2R 5075528 intergenic not near genes chr2R 5075805 intergenic not near genes chr2R_24_5075001 chr2R_5075001 RAL-340_100b 878 chr2R 5125223 5125275 chr2R 5125566 5125618 13 337 7.5 7.0 7.2 1.6 395 chr2R 5125223 intron gus - chr2R 5125420 intron gus - chr2R 5125618 intron gus - chr2R_13_5125001 chr2R_5125001 RAL-340_100b 879 chr2R 5144905 5144922 chr2R 5145006 5145023 8 100 10.0 5.0 7.5 0.9 118 chr2R 5144905 intron Atf6 + chr2R 5144964 intron Atf6 + chr2R 5145023 intron Atf6 + chr2R_8_5140001 chr2R_5140001 RAL-340_100b 880 chr2R 5237323 5237358 chr2R 5237430 5237435 9 104 7.5 0.0 3.8 1.9 112 chr2R 5237323 intron Nipped-A - chr2R 5237379 intron Nipped-A - chr2R 5237435 intron Nipped-A - chr2R_9_5235001 chr2R_5235001 RAL-340_100b 881 chr2R 5266093 5266124 chr2R 5266201 5266231 30 106 139.5 138.0 138.8 0.2 138 chr2R 5266093 intron d4 + chr2R 5266162 intron d4 + chr2R 5266231 intron d4 + chr2R_30_5265001 chr2R_5265001 RAL-340_100b 882 chr2R 5266128 5266132 chr2R 5266221 5266240 7 106 140.0 137.5 138.8 0.1 112 chr2R 5266128 intron d4 + chr2R 5266184 intron d4 + chr2R 5266240 intron d4 + chr2R_7_5265001 chr2R_5265001 RAL-340_100b 883 chr2R 5266137 5266139 chr2R 5266205 5266247 7 101 132.0 136.5 134.2 0.1 110 chr2R 5266137 intron d4 + chr2R 5266192 intron d4 + chr2R 5266247 intron d4 + chr2R_7_5265001 chr2R_5265001 RAL-340_100b 884 chr2R 5266141 5266143 chr2R 5266244 5266251 5 107 129.5 136.0 132.8 0.0 110 chr2R 5266141 intron d4 + chr2R 5266196 intron d4 + chr2R 5266251 intron d4 + chr2R_5_5265001 chr2R_5265001 RAL-340_100b 885 chr2R 5266144 5266152 chr2R 5266232 5266232 13 101 127.5 135.5 131.5 0.1 88 chr2R 5266144 intron d4 + chr2R 5266188 intron d4 + chr2R 5266232 intron d4 + chr2R_13_5265001 chr2R_5265001 RAL-340_100b 886 chr2R 5415429 5415475 chr2R 5415531 5415577 9 99 1.5 3.5 2.5 2.6 148 chr2R 5415429 intron laccase2 + chr2R 5415503 intron laccase2 + chr2R 5415577 intron laccase2 + chr2R_9_5415001 chr2R_5415001 RAL-340_100b 887 chr2R 5417971 5418026 chr2R 5420626 5420626 Burdock 10 2646 6.5 5.0 5.8 1.5 2655 chr2R 5417971 intron laccase2 + chr2R 5419298 intron laccase2 + chr2R 5420626 intron laccase2 + chr2R_10_5415001 chr2R_5415001 RAL-340_100b 888 chr2R 5472345 5472394 chr2R 5472464 5472492 26 111 11.5 9.0 10.2 2.3 147 chr2R 5472345 intron CG30440 - chr2R 5472418 intron CG30440 - chr2R 5472492 intron CG30440 - chr2R_26_5470001 chr2R_5470001 RAL-340_100b 889 chr2R 5543200 5543211 chr2R 5547309 5547320 invader1 4 4108 0.5 16.0 8.2 0.4 4120 chr2R 5543200 intron CG30438 + chr2R 5545260 intron CG30438 + chr2R 5547320 intron CG30438 + chr2R_4_5545001 chr2R_5545001 RAL-340_100b 890 chr2R 5581397 5581407 chr2R 5627631 5627641 6 46233 35.5 16.0 25.8 0.2 46244 chr2R 5581397 intergenic not near genes chr2R 5604519 intron Fis1 - chr2R 5627641 intergenic not near genes chr2R_6_5600001 chr2R_5600001 RAL-340_100b 891 chr2R 5581416 5581425 chr2R 5627600 5627614 9 46212 27.5 9.0 18.2 0.5 46198 chr2R 5581416 intergenic not near genes chr2R 5604515 exon Fis1 - chr2R 5627614 intergenic not near genes chr2R_9_5600001 chr2R_5600001 RAL-340_100b 892 chr2R 5606524 5606766 chr2R 5736482 5736773 6 129982 10.0 12.0 11.0 0.5 130249 chr2R 5606524 intergenic not near genes chr2R 5671648 intergenic kune + chr2R 5736773 intergenic not near genes chr2R_6_5670001 chr2R_5670001 RAL-340_100b 893 chr2R 5621346 5621401 chr2R 5621451 5621496 17 98 9.0 8.0 8.5 1.8 150 chr2R 5621346 intergenic not near genes chr2R 5621421 intergenic not near genes chr2R 5621496 intergenic not near genes chr2R_17_5620001 chr2R_5620001 RAL-340_100b 894 chr2R 5606783 5606842 chr2R 5736778 5736805 6 129970 34.0 28.5 31.2 0.2 130022 chr2R 5606783 intergenic not near genes chr2R 5671794 5` UTR kune + chr2R 5736805 intergenic not near genes chr2R_6_5670001 chr2R_5670001 RAL-340_100b 895 chr2R 5750440 5750454 chr2R 5750541 5750571 5 109 11.0 11.0 11.0 0.4 131 chr2R 5750440 intergenic not near genes chr2R 5750506 intergenic not near genes chr2R 5750571 intergenic not near genes chr2R_5_5750001 chr2R_5750001 RAL-340_100b 896 chr2R 5771468 5771494 chr2R 5771558 5771600 14 100 11.0 15.0 13.0 1.0 132 chr2R 5771468 intron Gp210 + chr2R 5771534 intron Gp210 + chr2R 5771600 intron Gp210 + chr2R_14_5770001 chr2R_5770001 RAL-340_100b 897 chr2R 5772496 5772518 chr2R 5772600 5772622 6 99 15.0 5.5 10.2 0.5 126 chr2R 5772496 3` UTR Gp210 + chr2R 5772559 3` UTR Gp210 + chr2R 5772622 3` UTR Gp210 + chr2R_6_5770001 chr2R_5770001 RAL-340_100b 898 chr2R 5772521 5772546 chr2R 5772599 5772650 9 99 4.5 5.0 4.8 1.6 129 chr2R 5772521 3` UTR Gp210 + chr2R 5772586 3` UTR Gp210 + chr2R 5772650 3` UTR Gp210 + chr2R_9_5770001 chr2R_5770001 RAL-340_100b 899 chr2R 5812137 5812172 chr2R 5812239 5812274 8 99 9.5 11.0 10.2 0.7 137 chr2R 5812137 intron dpr12 + chr2R 5812206 intron dpr12 + chr2R 5812274 intron dpr12 + chr2R_8_5810001 chr2R_5810001 RAL-340_100b 900 chr2R 5869254 5869304 chr2R 5874355 5874405 flea 21 5099 18.0 12.0 15.0 1.3 5151 chr2R 5869254 intergenic not near genes chr2R 5871830 intergenic not near genes chr2R 5874405 intergenic not near genes chr2R_21_5870001 chr2R_5870001 RAL-340_100b 901 chr2R 5902142 5902192 chr2R 5909726 5909776 17.6 4 7584 7.0 7.0 7.0 0.5 7634 chr2R 5902142 intron CG43366 + chr2R 5905959 intron CG43366 + chr2R 5909776 intron CG43366 + chr2R_4_5905001 chr2R_5905001 RAL-340_100b 902 chr2R 5939652 5939664 chr2R 5940874 5940886 INE-1 5 1221 10.5 22.5 16.5 0.3 1234 chr2R 5939652 intergenic not near genes chr2R 5940269 intergenic not near genes chr2R 5940886 intergenic not near genes chr2R_5_5940001 chr2R_5940001 RAL-340_100b 903 chr2R 5947910 5947962 chr2R 5948085 5948103 15 170 6.0 0.5 3.2 3.6 193 chr2R 5947910 intergenic not near genes chr2R 5948006 intergenic not near genes chr2R 5948103 intergenic not near genes chr2R_15_5945001 chr2R_5945001 RAL-340_100b 904 chr2R 5964921 5964958 chr2R 5965024 5965060 6 103 18.5 17.0 17.8 0.3 139 chr2R 5964921 intron CG7881 - chr2R 5964990 intron CG7881 - chr2R 5965060 intron CG7881 - chr2R_6_5960001 chr2R_5960001 RAL-340_100b 905 chr2R 6033416 6033476 chr2R 6033526 6033586 48 106 13.0 14.5 13.8 3.2 170 chr2R 6033416 intron SCAP - chr2R 6033501 intron SCAP - chr2R 6033586 intron SCAP - chr2R_48_6030001 chr2R_6030001 RAL-340_100b 906 chr2R 6088348 6088353 chr2R 6088466 6088471 6 118 18.0 7.0 12.5 0.4 123 chr2R 6088348 intergenic not near genes chr2R 6088410 intergenic not near genes chr2R 6088471 intergenic not near genes chr2R_6_6085001 chr2R_6085001 RAL-340_100b 907 chr2R 6088356 6088376 chr2R 6088474 6088494 15 118 10.5 13.0 11.8 1.2 138 chr2R 6088356 intergenic not near genes chr2R 6088425 intergenic not near genes chr2R 6088494 intergenic not near genes chr2R_15_6085001 chr2R_6085001 RAL-340_100b 908 chr2R 6088377 6088388 chr2R 6088465 6088506 4 108 5.5 6.0 5.8 0.6 129 chr2R 6088377 intergenic not near genes chr2R 6088442 intergenic not near genes chr2R 6088506 intergenic not near genes chr2R_4_6085001 chr2R_6085001 RAL-340_100b 909 chr2R 6096718 6096739 chr2R 6101929 6101952 BS 5 5213 22.5 20.5 21.5 0.2 5234 chr2R 6096718 intron EcR - chr2R 6099335 intron EcR - chr2R 6101952 intron EcR - chr2R_5_6095001 chr2R_6095001 RAL-340_100b 910 chr2R 6096750 6096751 chr2R 6101910 6101920 BS 5 5186 17.5 13.5 15.5 0.3 5170 chr2R 6096750 intron EcR - chr2R 6099335 intron EcR - chr2R 6101920 intron EcR - chr2R_5_6095001 chr2R_6095001 RAL-340_100b 911 chr2R 6144389 6144429 chr2R 6144496 6144538 11 107 6.0 4.5 5.2 1.8 149 chr2R 6144389 intron EcR - chr2R 6144464 intron EcR - chr2R 6144538 intron EcR - chr2R_11_6140001 chr2R_6140001 RAL-340_100b 912 chr2R 6168174 6168182 chr2R 6168281 6168289 13 107 32.0 10.5 21.2 0.6 115 chr2R 6168174 intron EcR - chr2R 6168232 intron EcR - chr2R 6168289 intron EcR - chr2R_13_6165001 chr2R_6165001 RAL-340_100b 913 chr2R 6168183 6168208 chr2R 6168279 6168315 35 105 17.5 10.0 13.8 2.4 132 chr2R 6168183 intron EcR - chr2R 6168249 intron EcR - chr2R 6168315 intron EcR - chr2R_35_6165001 chr2R_6165001 RAL-340_100b 914 chr2R 6168210 6168215 chr2R 6168292 6168322 8 102 14.5 15.0 14.8 0.5 112 chr2R 6168210 intron EcR - chr2R 6168266 intron EcR - chr2R 6168322 intron EcR - chr2R_8_6165001 chr2R_6165001 RAL-340_100b 915 chr2R 6168219 6168226 chr2R 6168286 6168333 11 97 10.5 12.5 11.5 0.9 114 chr2R 6168219 intron EcR - chr2R 6168276 intron EcR - chr2R 6168333 intron EcR - chr2R_11_6165001 chr2R_6165001 RAL-340_100b 916 chr2R 6178096 6178142 chr2R 6178247 6178293 20 147 3.5 13.5 8.5 2.1 197 chr2R 6178096 intergenic not near genes chr2R 6178194 intergenic not near genes chr2R 6178293 intergenic not near genes chr2R_20_6175001 chr2R_6175001 RAL-340_100b 917 chr2R 6194665 6194699 chr2R 6194768 6194778 17 103 16.0 12.5 14.2 1.1 113 chr2R 6194665 intron Ptr - chr2R 6194722 intron Ptr - chr2R 6194778 intron Ptr - chr2R_17_6190001 chr2R_6190001 RAL-340_100b 918 chr2R 6494510 6494554 chr2R 6499297 6499301 F-element 16 4780 3.5 6.0 4.8 2.8 4791 chr2R 6494510 intergenic not near genes chr2R 6496906 intergenic not near genes chr2R 6499301 intergenic not near genes chr2R_16_6495001 chr2R_6495001 RAL-340_100b 919 chr2R 6530743 6530796 chr2R 6530848 6530901 20 104 5.5 4.5 5.0 3.3 158 chr2R 6530743 intron jing + chr2R 6530822 intron jing + chr2R 6530901 intron jing + chr2R_20_6530001 chr2R_6530001 RAL-340_100b 920 chr2R 6541052 6541087 chr2R 6541153 6541188 15 101 12.0 6.5 9.2 1.5 136 chr2R 6541052 intron jing + chr2R 6541120 intron jing + chr2R 6541188 intron jing + chr2R_15_6540001 chr2R_6540001 RAL-340_100b 921 chr2R 6541089 6541103 chr2R 6541151 6541194 11 93 10.5 7.5 9.0 1.1 105 chr2R 6541089 intron jing + chr2R 6541142 intron jing + chr2R 6541194 intron jing + chr2R_11_6540001 chr2R_6540001 RAL-340_100b 922 chr2R 6551966 6552024 chr2R 6552094 6552140 15 121 5.5 6.0 5.8 2.2 174 chr2R 6551966 intron jing + chr2R 6552053 intron jing + chr2R 6552140 intron jing + chr2R_15_6550001 chr2R_6550001 RAL-340_100b 923 chr2R 6579751 6579799 chr2R 6584859 6584910 flea 8 5110 2.0 2.0 2.0 2.7 5159 chr2R 6579751 intron jing + chr2R 6582330 intron jing + chr2R 6584910 intron jing + chr2R_8_6580001 chr2R_6580001 RAL-340_100b 924 chr2R 6612114 6612159 chr2R 6612218 6612264 24 101 9.5 8.5 9.0 2.4 150 chr2R 6612114 intron jing + chr2R 6612189 intron jing + chr2R 6612264 intron jing + chr2R_24_6610001 chr2R_6610001 RAL-340_100b 925 chr2R 6633172 6633212 chr2R 6633274 6633314 27 99 12.0 7.5 9.8 2.5 142 chr2R 6633172 intergenic Vha16-1 -,Trap1 - chr2R 6633243 intergenic Vha16-1 -,Trap1 - chr2R 6633314 intergenic Vha16-1 -,Trap1 - chr2R_27_6630001 chr2R_6630001 RAL-340_100b 926 chr2R 6633214 6633231 chr2R 6633273 6633333 11 97 8.5 8.0 8.2 1.2 119 chr2R 6633214 intergenic Vha16-1 -,Trap1 - chr2R 6633274 intergenic Vha16-1 -,Trap1 - chr2R 6633333 intergenic Vha16-1 -,Trap1 - chr2R_11_6630001 chr2R_6630001 RAL-340_100b 927 chr2R 6646777 6646827 chr2R 6647075 6647125 19 294 5.0 5.5 5.2 3.1 348 chr2R 6646777 intergenic not near genes chr2R 6646951 intergenic not near genes chr2R 6647125 intergenic not near genes chr2R_19_6645001 chr2R_6645001 RAL-340_100b 928 chr2R 6647324 6647332 chr2R 6647420 6647433 5 100 24.0 8.0 16.0 0.3 109 chr2R 6647324 intergenic not near genes chr2R 6647378 intergenic not near genes chr2R 6647433 intergenic not near genes chr2R_5_6645001 chr2R_6645001 RAL-340_100b 929 chr2R 6699595 6699610 chr2R 6699684 6699720 6 106 7.5 6.5 7.0 0.8 125 chr2R 6699595 intergenic Rab2 + chr2R 6699658 intergenic Rab2 + chr2R 6699720 intergenic Rab2 +,CG3409 -,CG45092 - chr2R_6_6695001 chr2R_6695001 RAL-340_100b 930 chr2R 6846275 6846281 chr2R 6846632 6846638 4 356 16.0 9.0 12.5 0.3 363 chr2R 6846275 intergenic not near genes chr2R 6846456 intergenic not near genes chr2R 6846638 intergenic not near genes chr2R_4_6845001 chr2R_6845001 RAL-340_100b 931 chr2R 6846283 6846326 chr2R 6846630 6846683 33 354 6.0 8.5 7.2 4.0 400 chr2R 6846283 intergenic not near genes chr2R 6846483 intergenic not near genes chr2R 6846683 intergenic not near genes chr2R_33_6845001 chr2R_6845001 RAL-340_100b 932 chr2R 6857065 6857101 chr2R 6857200 6857209 11 137 12.0 5.5 8.8 1.1 144 chr2R 6857065 intergenic not near genes chr2R 6857137 intergenic not near genes chr2R 6857209 intergenic not near genes chr2R_11_6855001 chr2R_6855001 RAL-340_100b 933 chr2R 6857106 6857111 chr2R 6857203 6857214 4 122 8.0 6.0 7.0 0.5 108 chr2R 6857106 intergenic not near genes chr2R 6857160 intergenic not near genes chr2R 6857214 intergenic not near genes chr2R_4_6855001 chr2R_6855001 RAL-340_100b 934 chr2R 6952149 6952168 chr2R 6959754 6959773 opus 11 7604 19.5 13.5 16.5 0.6 7624 chr2R 6952149 intron,intron,exon mim -,CheB42c -,ppk25 + chr2R 6955961 intron,intron mim -,CheB42c - chr2R 6959773 intron,intron mim -,CheB42c - chr2R_11_6955001 chr2R_6955001 RAL-340_100b 935 chr2R 6952169 6952177 chr2R 6959744 6959782 opus 4 7598 15.5 10.0 12.8 0.3 7613 chr2R 6952169 intron,intron mim -,CheB42c - chr2R 6955976 intron,intron mim -,CheB42c - chr2R 6959782 intron,intron mim -,CheB42c - chr2R_4_6955001 chr2R_6955001 RAL-340_100b 936 chr2R 6962422 6962480 chr2R 6962804 6962862 32 378 7.0 9.5 8.2 3.5 440 chr2R 6962422 intron,intron mim -,CheB42c - chr2R 6962642 intron,intron mim -,CheB42c - chr2R 6962862 intron,intron mim -,CheB42c - chr2R_32_6960001 chr2R_6960001 RAL-340_100b 937 chr2R 7113913 7113971 chr2R 7114099 7114157 27 184 5.0 8.0 6.5 3.6 244 chr2R 7113913 intron esn + chr2R 7114035 intron esn + chr2R 7114157 intron esn + chr2R_27_7110001 chr2R_7110001 RAL-340_100b 938 chr2R 7139945 7139955 chr2R 7141432 7141472 hopper2 5 1501 2.5 15.0 8.8 0.5 1527 chr2R 7139945 intergenic not near genes chr2R 7140708 intergenic not near genes chr2R 7141472 intergenic not near genes chr2R_5_7140001 chr2R_7140001 RAL-340_100b 939 chr2R 7196552 7196564 chr2R 7201349 7201364 F-element 8 4798 16.5 11.0 13.8 0.5 4812 chr2R 7196552 intron pk + chr2R 7198958 intron pk + chr2R 7201364 intron pk + chr2R_8_7195001 chr2R_7195001 RAL-340_100b 940 chr2R 7196565 7196590 chr2R 7201345 7201390 F-element 16 4792 7.0 9.5 8.2 1.7 4825 chr2R 7196565 intron pk + chr2R 7198978 intron pk + chr2R 7201390 intron pk + chr2R_16_7195001 chr2R_7195001 RAL-340_100b 941 chr2R 7209860 7209865 chr2R 7217646 7217651 roo 4 7786 16.0 19.5 17.8 0.2 7791 chr2R 7209860 intron pk + chr2R 7213756 intron pk + chr2R 7217651 intron pk + chr2R_4_7210001 chr2R_7210001 RAL-340_100b 942 chr2R 7209868 7209874 chr2R 7217596 7217660 roo 7 7777 11.5 0.5 6.0 1.0 7792 chr2R 7209868 intron pk + chr2R 7213764 intron pk + chr2R 7217660 intron pk + chr2R_7_7210001 chr2R_7210001 RAL-340_100b 943 chr2R 7235798 7235807 chr2R 7240915 7240924 jockey 7 5116 20.0 8.0 14.0 0.5 5126 chr2R 7235798 intergenic not near genes chr2R 7238361 intergenic not near genes chr2R 7240924 intergenic not near genes chr2R_7_7235001 chr2R_7235001 RAL-340_100b 944 chr2R 7235808 7235832 chr2R 7240914 7240949 jockey 8 5113 14.0 7.0 10.5 0.7 5141 chr2R 7235808 intergenic not near genes chr2R 7238378 intergenic not near genes chr2R 7240949 intergenic not near genes chr2R_8_7235001 chr2R_7235001 RAL-340_100b 945 chr2R 7235833 7235849 chr2R 7240910 7240966 jockey 16 5101 8.0 6.5 7.2 2.0 5133 chr2R 7235833 intergenic not near genes chr2R 7238400 intergenic not near genes chr2R 7240966 intergenic not near genes chr2R_16_7235001 chr2R_7235001 RAL-340_100b 946 chr2R 7306543 7306551 chr2R 7306646 7306654 5 103 23.5 9.0 16.2 0.3 111 chr2R 7306543 intergenic not near genes chr2R 7306598 intergenic not near genes chr2R 7306654 intergenic not near genes chr2R_5_7305001 chr2R_7305001 RAL-340_100b 947 chr2R 7306557 7306596 chr2R 7306644 7306699 15 99 8.0 8.0 8.0 1.7 142 chr2R 7306557 intergenic not near genes chr2R 7306628 intergenic not near genes chr2R 7306699 intergenic not near genes chr2R_15_7305001 chr2R_7305001 RAL-340_100b 948 chr2R 7353364 7353419 chr2R 7353495 7353545 18 129 5.5 6.0 5.8 2.6 181 chr2R 7353364 intron Dscam1 - chr2R 7353454 intron Dscam1 - chr2R 7353545 intron Dscam1 - chr2R_18_7350001 chr2R_7350001 RAL-340_100b 949 chr2R 7370985 7371059 chr2R 7371122 7371175 23 131 1.5 15.0 8.2 2.5 190 chr2R 7370985 intron Dscam1 - chr2R 7371080 intron Dscam1 - chr2R 7371175 intron Dscam1 - chr2R_23_7370001 chr2R_7370001 RAL-340_100b 950 chr2R 7405367 7405417 chr2R 7405663 7405713 17 294 10.0 9.0 9.5 1.6 346 chr2R 7405367 intron Eaf - chr2R 7405540 intron Eaf - chr2R 7405713 intron Eaf - chr2R_17_7405001 chr2R_7405001 RAL-340_100b 951 chr2R 7434873 7434883 chr2R 7439199 7439209 Juan 7 4324 37.0 17.5 27.2 0.2 4336 chr2R 7434873 intergenic so + chr2R 7437041 intergenic not near genes chr2R 7439209 intergenic not near genes chr2R_7_7435001 chr2R_7435001 RAL-340_100b 952 chr2R 7434886 7434911 chr2R 7439192 7439237 Juan 23 4322 22.0 15.5 18.8 1.2 4351 chr2R 7434886 intergenic so + chr2R 7437062 intergenic not near genes chr2R 7439237 intergenic not near genes chr2R_23_7435001 chr2R_7435001 RAL-340_100b 953 chr2R 7459263 7459278 chr2R 7459367 7459389 5 111 19.5 5.0 12.2 0.4 126 chr2R 7459263 intergenic Inos -,CG11141 - chr2R 7459326 intergenic CG11141 -,Inos - chr2R 7459389 intergenic CG11141 - chr2R_5_7455001 chr2R_7455001 RAL-340_100b 954 chr2R 7608390 7608432 chr2R 7613618 7613660 I-element 17 5226 6.5 17.5 12.0 1.3 5270 chr2R 7608390 intron CG1358 - chr2R 7611025 intron CG1358 - chr2R 7613660 intron CG1358 - chr2R_17_7610001 chr2R_7610001 RAL-340_100b 955 chr2R 7763212 7763222 chr2R 7763315 7763329 7 108 39.5 11.0 25.2 0.3 117 chr2R 7763212 intron,intron CG30497 -,CG45093 - chr2R 7763270 intron,intron CG30497 -,CG45093 - chr2R 7763329 intron,intron CG30497 -,CG45093 - chr2R_7_7760001 chr2R_7760001 RAL-340_100b 956 chr2R 7777562 7777601 chr2R 7777675 7777722 11 116 8.0 3.0 5.5 1.7 160 chr2R 7777562 intron,intron CG30497 -,CG45093 - chr2R 7777642 intron,intron CG30497 -,CG45093 - chr2R 7777722 intron,intron CG30497 -,CG45093 - chr2R_11_7775001 chr2R_7775001 RAL-340_100b 957 chr2R 7815657 7815701 chr2R 7822144 7822178 Burdock 15 6492 8.0 15.0 11.5 1.2 6521 chr2R 7815657 intergenic CG1882 + chr2R 7818918 intergenic not near genes chr2R 7822178 3` UTR cathD - chr2R_15_7815001 chr2R_7815001 RAL-340_100b 958 chr2R 7862239 7862251 chr2R 7867350 7867362 flea 4 5111 28.0 10.5 19.2 0.2 5123 chr2R 7862239 intron Dgk - chr2R 7864800 intron Dgk - chr2R 7867362 intron Dgk - chr2R_4_7860001 chr2R_7860001 RAL-340_100b 959 chr2R 7869167 7869219 chr2R 7873978 7873986 Doc 20 4804 7.5 9.0 8.2 2.2 4819 chr2R 7869167 intron Dgk - chr2R 7871576 intron Dgk - chr2R 7873986 intron Dgk - chr2R_20_7870001 chr2R_7870001 RAL-340_100b 960 chr2R 7910142 7910159 chr2R 7910252 7910269 7 108 14.5 8.0 11.2 0.6 127 chr2R 7910142 intron CG30377 + chr2R 7910206 intron CG30377 + chr2R 7910269 intron CG30377 + chr2R_7_7910001 chr2R_7910001 RAL-340_100b 961 chr2R 7910160 7910169 chr2R 7910242 7910268 7 99 12.5 7.0 9.8 0.6 108 chr2R 7910160 intron CG30377 + chr2R 7910214 intron CG30377 + chr2R 7910268 intron CG30377 + chr2R_7_7910001 chr2R_7910001 RAL-340_100b 962 chr2R 7919979 7920031 chr2R 7924506 7924530 10 4503 48.0 52.5 50.2 0.2 4551 chr2R 7919979 intron Cul1 + chr2R 7922254 exon Or43b - chr2R 7924530 exon Kdm4A - chr2R_10_7920001 chr2R_7920001 RAL-340_100b 963 chr2R 7926904 7926937 chr2R 7927005 7927038 12 101 4.5 9.0 6.8 1.5 134 chr2R 7926904 intron CG8791 + chr2R 7926971 intron CG8791 + chr2R 7927038 intron CG8791 + chr2R_12_7925001 chr2R_7925001 RAL-340_100b 964 chr2R 8015641 8015664 chr2R 8017672 8017710 23 2041 25.0 16.5 20.8 1.1 2069 chr2R 8015641 intergenic mir-4981 + chr2R 8016676 intergenic not near genes chr2R 8017710 intergenic not near genes chr2R_23_8015001 chr2R_8015001 RAL-340_100b 965 chr2R 8015665 8015678 chr2R 8017671 8017716 14 2041 14.0 16.0 15.0 0.9 2051 chr2R 8015665 intergenic mir-4981 + chr2R 8016690 intergenic not near genes chr2R 8017716 intergenic not near genes chr2R_14_8015001 chr2R_8015001 RAL-340_100b 966 chr2R 8026787 8026836 chr2R 8026888 8026937 7 101 2.5 7.5 5.0 1.2 150 chr2R 8026787 intergenic CR45267 + chr2R 8026862 intergenic CR45267 + chr2R 8026937 intergenic CR45267 + chr2R_7_8025001 chr2R_8025001 RAL-340_100b 967 chr2R 8041018 8041045 chr2R 8041133 8041160 21 114 12.5 17.5 15.0 1.3 142 chr2R 8041018 intron Optix + chr2R 8041089 intron Optix + chr2R 8041160 intron Optix + chr2R_21_8040001 chr2R_8040001 RAL-340_100b 968 chr2R 8044278 8044306 chr2R 8044406 8044425 15 128 17.0 12.5 14.8 0.9 147 chr2R 8044278 intergenic not near genes chr2R 8044352 intergenic not near genes chr2R 8044425 intergenic not near genes chr2R_15_8040001 chr2R_8040001 RAL-340_100b 969 chr2R 8067045 8067093 chr2R 8067152 8067171 21 104 6.5 13.5 10.0 1.9 126 chr2R 8067045 intron CG17977 - chr2R 8067108 intron CG17977 - chr2R 8067171 exon CG17977 - chr2R_21_8065001 chr2R_8065001 RAL-340_100b 970 chr2R 8089245 8089268 chr2R 8089356 8089379 8 110 9.5 11.0 10.2 0.7 134 chr2R 8089245 3` UTR sut2 + chr2R 8089312 intergenic sut2 +,sut3 + chr2R 8089379 intergenic sut2 +,sut3 + chr2R_8_8085001 chr2R_8085001 RAL-340_100b 971 chr2R 8089270 8089286 chr2R 8089351 8089387 10 105 6.5 9.0 7.8 1.1 117 chr2R 8089270 3` UTR sut2 + chr2R 8089328 intergenic sut2 +,sut3 + chr2R 8089387 intergenic sut2 +,sut3 + chr2R_10_8085001 chr2R_8085001 RAL-340_100b 972 chr2R 8105915 8105958 chr2R 8106025 8106074 21 115 11.5 12.5 12.0 1.6 159 chr2R 8105915 5` UTR Cul4 - chr2R 8105994 intron Cul4 - chr2R 8106074 5` UTR Cul4 - chr2R_21_8105001 chr2R_8105001 RAL-340_100b 973 chr2R 8105963 8105966 chr2R 8106030 8106075 5 101 8.0 14.5 11.2 0.4 112 chr2R 8105963 intron Cul4 - chr2R 8106019 5` UTR Cul4 - chr2R 8106075 5` UTR Cul4 - chr2R_5_8105001 chr2R_8105001 RAL-340_100b 974 chr2R 8145102 8145112 chr2R 8145209 8145214 9 107 24.0 11.5 17.8 0.5 112 chr2R 8145102 intron Lpin - chr2R 8145158 intron Lpin - chr2R 8145214 intron Lpin - chr2R_9_8145001 chr2R_8145001 RAL-340_100b 975 chr2R 8145121 8145127 chr2R 8145208 8145235 5 100 18.5 9.0 13.8 0.3 114 chr2R 8145121 intron Lpin - chr2R 8145178 intron Lpin - chr2R 8145235 intron Lpin - chr2R_5_8145001 chr2R_8145001 RAL-340_100b 976 chr2R 8145146 8145159 chr2R 8145217 8145256 6 97 7.0 14.5 10.8 0.5 110 chr2R 8145146 intron Lpin - chr2R 8145201 intron Lpin - chr2R 8145256 intron Lpin - chr2R_6_8145001 chr2R_8145001 RAL-340_100b 977 chr2R 8157883 8157906 chr2R 8157989 8158009 5 109 9.0 8.5 8.8 0.5 126 chr2R 8157883 5` UTR CR44068 + chr2R 8157946 5` UTR CR44068 + chr2R 8158009 5` UTR CR44068 + chr2R_5_8155001 chr2R_8155001 RAL-340_100b 978 chr2R 8160909 8160946 chr2R 8161024 8161024 22 110 9.0 16.5 12.8 1.6 115 chr2R 8160909 exon CG8708 - chr2R 8160966 intron CG8708 - chr2R 8161024 intron CG8708 - chr2R_22_8160001 chr2R_8160001 RAL-340_100b 979 chr2R 8188191 8188218 chr2R 8188311 8188322 11 116 13.5 36.0 24.8 0.4 131 chr2R 8188191 intron LRP1 + chr2R 8188256 intron LRP1 + chr2R 8188322 intron LRP1 + chr2R_11_8185001 chr2R_8185001 RAL-340_100b 980 chr2R 8188219 8188226 chr2R 8188304 8188333 5 107 12.0 34.0 23.0 0.2 114 chr2R 8188219 intron LRP1 + chr2R 8188276 intron LRP1 + chr2R 8188333 intron LRP1 + chr2R_5_8185001 chr2R_8185001 RAL-340_100b 981 chr2R 8191256 8191313 chr2R 8191373 8191430 18 115 5.0 6.5 5.8 2.6 174 chr2R 8191256 intron LRP1 + chr2R 8191343 intron LRP1 + chr2R 8191430 intron LRP1 + chr2R_18_8190001 chr2R_8190001 RAL-340_100b 982 chr2R 8209580 8209612 chr2R 8209682 8209713 7 94 17.5 11.5 14.5 0.5 133 chr2R 8209580 exon LRP1 + chr2R 8209646 intron LRP1 + chr2R 8209713 exon LRP1 + chr2R_7_8205001 chr2R_8205001 RAL-340_100b 983 chr2R 8209618 8209624 chr2R 8209690 8209724 4 85 14.0 13.0 13.5 0.3 106 chr2R 8209618 exon LRP1 + chr2R 8209671 intron LRP1 + chr2R 8209724 exon LRP1 + chr2R_4_8205001 chr2R_8205001 RAL-340_100b 984 chr2R 8236011 8236054 chr2R 8236117 8236159 26 100 13.0 0.5 6.8 3.3 148 chr2R 8236011 intergenic not near genes chr2R 8236085 intergenic not near genes chr2R 8236159 intergenic not near genes chr2R_26_8235001 chr2R_8235001 RAL-340_100b 985 chr2R 8330842 8330889 chr2R 8331352 8331400 roo 11 509 9.5 6.5 8.0 1.2 558 chr2R 8330842 intron pdm3 + chr2R 8331121 intron pdm3 + chr2R 8331400 intron pdm3 + chr2R_11_8330001 chr2R_8330001 RAL-340_100b 986 chr2R 8333206 8333231 chr2R 8333349 8333374 12 142 12.0 6.5 9.2 1.2 168 chr2R 8333206 intron pdm3 + chr2R 8333290 intron pdm3 + chr2R 8333374 intron pdm3 + chr2R_12_8330001 chr2R_8330001 RAL-340_100b 987 chr2R 8333247 8333258 chr2R 8333373 8333401 5 138 5.0 11.5 8.2 0.5 154 chr2R 8333247 intron pdm3 + chr2R 8333324 intron pdm3 + chr2R 8333401 intron pdm3 + chr2R_5_8330001 chr2R_8330001 RAL-340_100b 988 chr2R 8368189 8368218 chr2R 8368263 8368323 13 102 6.0 7.0 6.5 1.7 134 chr2R 8368189 intron pdm3 + chr2R 8368256 intron pdm3 + chr2R 8368323 intron pdm3 + chr2R_13_8365001 chr2R_8365001 RAL-340_100b 989 chr2R 8398189 8398200 chr2R 8402995 8403006 Doc 5 4804 30.0 10.5 20.2 0.2 4817 chr2R 8398189 intron CG2121 - chr2R 8400598 intron CG2121 - chr2R 8403006 intron CG2121 - chr2R_5_8400001 chr2R_8400001 RAL-340_100b 990 chr2R 8398209 8398239 chr2R 8403004 8403045 Doc 14 4802 11.5 11.5 11.5 1.1 4836 chr2R 8398209 intron CG2121 - chr2R 8400627 intron CG2121 - chr2R 8403045 intron CG2121 - chr2R_14_8400001 chr2R_8400001 RAL-340_100b 991 chr2R 8452013 8452026 chr2R 8452121 8452124 4 105 17.0 7.5 12.2 0.3 111 chr2R 8452013 intergenic Mal-A1 - chr2R 8452068 intergenic Mal-A1 - chr2R 8452124 intergenic Mal-A1 - chr2R_4_8450001 chr2R_8450001 RAL-340_100b 992 chr2R 8452028 8452065 chr2R 8452119 8452168 14 98 4.5 7.0 5.8 2.1 140 chr2R 8452028 intergenic Mal-A1 - chr2R 8452098 intergenic Mal-A1 - chr2R 8452168 intergenic Mal-A1 - chr2R_14_8450001 chr2R_8450001 RAL-340_100b 993 chr2R 8483945 8483988 chr2R 8484043 8484089 15 95 3.5 5.5 4.5 2.7 144 chr2R 8483945 intron mtt - chr2R 8484017 intron mtt - chr2R 8484089 intron mtt - chr2R_15_8480001 chr2R_8480001 RAL-340_100b 994 chr2R 8508741 8508781 chr2R 8508849 8508883 17 106 8.5 4.5 6.5 2.3 142 chr2R 8508741 intron mtt - chr2R 8508812 intron mtt - chr2R 8508883 intron mtt - chr2R_17_8505001 chr2R_8505001 RAL-340_100b 995 chr2R 8612562 8612609 chr2R 8612663 8612706 23 99 9.5 12.5 11.0 1.9 144 chr2R 8612562 intron CG8642 - chr2R 8612634 intron CG8642 - chr2R 8612706 intron CG8642 - chr2R_23_8610001 chr2R_8610001 RAL-340_100b 996 chr2R 8635909 8635933 chr2R 8636012 8636036 5 103 0.0 10.5 5.2 0.8 127 chr2R 8635909 intergenic not near genes chr2R 8635972 intergenic not near genes chr2R 8636036 intergenic not near genes chr2R_5_8635001 chr2R_8635001 RAL-340_100b 997 chr2R 8722752 8722762 chr2R 8723006 8723028 pogo 6 261 18.0 8.5 13.2 0.4 276 chr2R 8722752 intron CG14767 - chr2R 8722890 intron CG14767 - chr2R 8723028 intron CG14767 - chr2R_6_8720001 chr2R_8720001 RAL-340_100b 998 chr2R 8722763 8722791 chr2R 8723003 8723057 pogo 14 254 14.0 8.5 11.2 1.1 294 chr2R 8722763 intron CG14767 - chr2R 8722910 intron CG14767 - chr2R 8723057 intron CG14767 - chr2R_14_8720001 chr2R_8720001 RAL-340_100b 999 chr2R 8729885 8729910 chr2R 8729991 8730016 10 103 9.0 7.0 8.0 1.1 131 chr2R 8729885 intron stmA - chr2R 8729950 intron stmA - chr2R 8730016 intron stmA - chr2R_10_8725001 chr2R_8725001 RAL-340_100b 1000 chr2R 8777926 8777929 chr2R 8784155 8784158 diver 5 6228 5.5 12.0 8.8 0.5 6232 chr2R 8777926 intergenic not near genes chr2R 8781042 intergenic not near genes chr2R 8784158 intergenic not near genes chr2R_5_8780001 chr2R_8780001 RAL-340_100b 1001 chr2R 8777930 8777941 chr2R 8784153 8784162 diver 9 6227 4.0 11.5 7.8 1.0 6232 chr2R 8777930 intergenic not near genes chr2R 8781046 intergenic not near genes chr2R 8784162 intergenic not near genes chr2R_9_8780001 chr2R_8780001 RAL-340_100b 1002 chr2R 8811732 8811784 chr2R 8811833 8811833 5 88 16.0 3.0 9.5 0.5 101 chr2R 8811732 intron sns + chr2R 8811782 intron sns + chr2R 8811833 intron sns + chr2R_5_8810001 chr2R_8810001 RAL-340_100b 1003 chr2R 8833402 8833405 chr2R 8833509 8833512 5 107 66.5 20.5 43.5 0.1 110 chr2R 8833402 intron sns + chr2R 8833457 intron sns + chr2R 8833512 intron sns + chr2R_5_8830001 chr2R_8830001 RAL-340_100b 1004 chr2R 8833407 8833414 chr2R 8833514 8833520 9 107 60.0 24.5 42.2 0.2 113 chr2R 8833407 intron sns + chr2R 8833464 intron sns + chr2R 8833520 intron sns + chr2R_9_8830001 chr2R_8830001 RAL-340_100b 1005 chr2R 8833415 8833431 chr2R 8833509 8833538 22 105 42.0 20.5 31.2 0.7 123 chr2R 8833415 intron sns + chr2R 8833476 intron sns + chr2R 8833538 intron sns + chr2R_22_8830001 chr2R_8830001 RAL-340_100b 1006 chr2R 8833432 8833435 chr2R 8833539 8833542 4 107 39.0 49.5 44.2 0.1 110 chr2R 8833432 intron sns + chr2R 8833487 intron sns + chr2R 8833542 intron sns + chr2R_4_8830001 chr2R_8830001 RAL-340_100b 1007 chr2R 8833436 8833453 chr2R 8833532 8833559 35 104 19.0 41.0 30.0 1.1 123 chr2R 8833436 intron sns + chr2R 8833498 intron sns + chr2R 8833559 intron sns + chr2R_35_8830001 chr2R_8830001 RAL-340_100b 1008 chr2R 8967409 8967447 chr2R 8967581 8967619 22 171 0.5 12.5 6.5 2.9 210 chr2R 8967409 intron CG8216 - chr2R 8967514 intron CG8216 - chr2R 8967619 intron CG8216 - chr2R_22_8965001 chr2R_8965001 RAL-340_100b 1009 chr2R 8967689 8967705 chr2R 8967830 8967847 9 139 8.5 3.0 5.8 1.3 158 chr2R 8967689 intron CG8216 - chr2R 8967768 intron CG8216 - chr2R 8967847 intron CG8216 - chr2R_9_8965001 chr2R_8965001 RAL-340_100b 1010 chr2R 8976598 8976639 chr2R 8976687 8976728 24 93 10.5 7.0 8.8 2.4 130 chr2R 8976598 intron CG8213 - chr2R 8976663 intron CG8213 - chr2R 8976728 intron CG8213 - chr2R_24_8975001 chr2R_8975001 RAL-340_100b 1011 chr2R 9031958 9032009 chr2R 9032061 9032106 26 99 5.0 7.0 6.0 3.7 148 chr2R 9031958 intergenic not near genes chr2R 9032032 intergenic not near genes chr2R 9032106 intergenic not near genes chr2R_26_9030001 chr2R_9030001 RAL-340_100b 1012 chr2R 9047399 9047430 chr2R 9047519 9047540 7 118 5.5 7.0 6.2 1.0 141 chr2R 9047399 intron CG13743 - chr2R 9047470 intron CG13743 - chr2R 9047540 intron CG13743 - chr2R_7_9045001 chr2R_9045001 RAL-340_100b 1013 chr2R 9063341 9063397 chr2R 9063638 9063687 21 291 5.0 6.0 5.5 3.2 346 chr2R 9063341 intron ana + chr2R 9063514 intron ana + chr2R 9063687 intron ana + chr2R_21_9060001 chr2R_9060001 RAL-340_100b 1014 chr2R 9065895 9065942 chr2R 9065996 9066039 13 103 4.5 7.5 6.0 1.9 144 chr2R 9065895 intron ana + chr2R 9065967 intron ana + chr2R 9066039 intron ana + chr2R_13_9065001 chr2R_9065001 RAL-340_100b 1015 chr2R 9110126 9110167 chr2R 9110240 9110281 11 111 2.5 1.5 2.0 3.7 155 chr2R 9110126 intergenic Pmm45A - chr2R 9110204 intergenic Pmm45A - chr2R 9110281 intergenic not near genes chr2R_11_9110001 chr2R_9110001 RAL-340_100b 1016 chr2R 9151277 9151316 chr2R 9157772 9157811 Burdock 21 6490 15.0 7.5 11.2 1.7 6534 chr2R 9151277 exon CG30345 + chr2R 9154544 intergenic not near genes chr2R 9157811 intergenic CG8008 - chr2R_21_9150001 chr2R_9150001 RAL-340_100b 1017 chr2R 9212676 9212690 chr2R 9213180 9213201 roo 12 510 25.0 12.0 18.5 0.6 525 chr2R 9212676 intergenic CR45309 + chr2R 9212938 intergenic CR45309 + chr2R 9213201 5` UTR CR45309 + chr2R_12_9210001 chr2R_9210001 RAL-340_100b 1018 chr2R 9212692 9212725 chr2R 9213178 9213188 roo 19 502 10.5 12.0 11.2 1.6 496 chr2R 9212692 intergenic CR45309 + chr2R 9212940 intergenic CR45309 + chr2R 9213188 5` UTR CR45309 + chr2R_19_9210001 chr2R_9210001 RAL-340_100b 1019 chr2R 9368109 9368148 chr2R 9368205 9368236 11 93 5.0 0.5 2.8 2.9 127 chr2R 9368109 intron CG13954 - chr2R 9368172 intron CG13954 - chr2R 9368236 intron CG13954 - chr2R_11_9365001 chr2R_9365001 RAL-340_100b 1020 chr2R 9480067 9480110 chr2R 9490623 9490640 roo 6 10551 7.0 9.0 8.0 0.7 10573 chr2R 9480067 intergenic not near genes chr2R 9485354 intergenic not near genes chr2R 9490640 intergenic not near genes chr2R_6_9485001 chr2R_9485001 RAL-340_100b 1021 chr2R 9541615 9541638 chr2R 9541713 9541735 8 101 5.5 5.5 5.5 1.2 120 chr2R 9541615 intergenic brp +,CG1888 - chr2R 9541675 intergenic brp +,CG1888 - chr2R 9541735 intergenic brp +,CG1888 - chr2R_8_9540001 chr2R_9540001 RAL-340_100b 1022 chr2R 9561801 9561850 chr2R 9561913 9561963 24 110 2.5 2.0 2.2 7.5 162 chr2R 9561801 3` UTR,intron CR45281 -,CG1809 + chr2R 9561882 3` UTR,intron CR45281 -,CG1809 + chr2R 9561963 3` UTR,intron CR45281 -,CG1809 + chr2R_24_9560001 chr2R_9560001 RAL-340_100b 1023 chr2R 9620077 9620087 chr2R 19076522 19076523 4 9456442 27.5 41.5 34.5 0.1 9456446 chr2R 9620077 intron Mmp2 - chr2R 14348300 intron Shroom + chr2R 19076523 intron 5-HT1A + chr2R_4_14345001 chr2R_14345001 RAL-340_100b 1024 chr2R 9653231 9653288 chr2R 9653340 9653387 29 106 5.5 7.0 6.2 4.0 156 chr2R 9653231 intron Mmp2 - chr2R 9653309 intron Mmp2 - chr2R 9653387 intron Mmp2 - chr2R_29_9650001 chr2R_9650001 RAL-340_100b 1025 chr2R 9726593 9726601 chr2R 9734169 9734177 17.6 6 7576 25.5 6.0 15.8 0.4 7584 chr2R 9726593 intron sqa - chr2R 9730385 intron sqa - chr2R 9734177 intron sqa - chr2R_6_9730001 chr2R_9730001 RAL-340_100b 1026 chr2R 9726603 9726640 chr2R 9734164 9734216 17.6 15 7574 9.5 5.0 7.2 1.8 7613 chr2R 9726603 intron sqa - chr2R 9730410 intron sqa - chr2R 9734216 intron sqa - chr2R_15_9730001 chr2R_9730001 RAL-340_100b 1027 chr2R 9741782 9741801 chr2R 9741884 9741903 7 102 9.5 18.0 13.8 0.5 121 chr2R 9741782 intron sqa - chr2R 9741842 intron sqa - chr2R 9741903 intron sqa - chr2R_7_9740001 chr2R_9740001 RAL-340_100b 1028 chr2R 9782420 9782434 chr2R 9782534 9782548 9 114 27.5 5.0 16.2 0.5 128 chr2R 9782420 intron CG1688 - chr2R 9782484 intron CG1688 - chr2R 9782548 intron CG1688 - chr2R_9_9780001 chr2R_9780001 RAL-340_100b 1029 chr2R 9782435 9782455 chr2R 9782533 9782569 11 110 17.5 5.0 11.2 0.9 134 chr2R 9782435 intron CG1688 - chr2R 9782502 intron CG1688 - chr2R 9782569 intron CG1688 - chr2R_11_9780001 chr2R_9780001 RAL-340_100b 1030 chr2R 9782460 9782463 chr2R 9782574 9782577 4 114 15.5 14.5 15.0 0.2 117 chr2R 9782460 intron CG1688 - chr2R 9782518 intron CG1688 - chr2R 9782577 intron CG1688 - chr2R_4_9780001 chr2R_9780001 RAL-340_100b 1031 chr2R 9830252 9830300 chr2R 9830360 9830407 9 105 5.0 6.5 5.8 1.3 155 chr2R 9830252 intron hebe - chr2R 9830330 intron hebe - chr2R 9830407 intron hebe - chr2R_9_9830001 chr2R_9830001 RAL-340_100b 1032 chr2R 9871015 9871069 chr2R 9871526 9871580 roo 22 509 5.5 12.5 9.0 2.2 565 chr2R 9871015 intron cbx - chr2R 9871298 intron cbx - chr2R 9871580 intron,5` UTR cbx -,CG18446 + chr2R_22_9870001 chr2R_9870001 RAL-340_100b 1033 chr2R 9928406 9928414 chr2R 9928552 9928564 4 149 14.5 8.0 11.2 0.3 158 chr2R 9928406 intron Mef2 - chr2R 9928485 intron Mef2 - chr2R 9928564 intron Mef2 - chr2R_4_9925001 chr2R_9925001 RAL-340_100b 1034 chr2R 9928421 9928643 chr2R 9928550 9928753 11 144 6.5 8.0 7.2 1.3 332 chr2R 9928421 intron Mef2 - chr2R 9928587 intron Mef2 - chr2R 9928753 intron Mef2 - chr2R_11_9925001 chr2R_9925001 RAL-340_100b 1035 chr2R 9935010 9935060 chr2R 9935109 9935146 8 100 2.5 3.5 3.0 2.0 136 chr2R 9935010 intron Mef2 - chr2R 9935078 intron Mef2 - chr2R 9935146 intron Mef2 - chr2R_8_9935001 chr2R_9935001 RAL-340_100b 1036 chr2R 9945433 9945464 chr2R 9945633 9945685 BS 31 217 12.5 5.5 9.0 3.1 252 chr2R 9945433 intron Mef2 - chr2R 9945559 intron Mef2 - chr2R 9945685 intron Mef2 - chr2R_31_9945001 chr2R_9945001 RAL-340_100b 1037 chr2R 9948357 9948413 chr2R 9948458 9948483 19 93 9.0 3.5 6.2 2.6 126 chr2R 9948357 intron Mef2 - chr2R 9948420 intron Mef2 - chr2R 9948483 intron Mef2 - chr2R_19_9945001 chr2R_9945001 RAL-340_100b 1038 chr2R 9956040 9956048 chr2R 9956142 9956150 6 102 26.0 7.0 16.5 0.3 110 chr2R 9956040 intron Mef2 - chr2R 9956095 intron Mef2 - chr2R 9956150 intron Mef2 - chr2R_6_9955001 chr2R_9955001 RAL-340_100b 1039 chr2R 9956053 9956089 chr2R 9956140 9956151 16 94 10.5 7.5 9.0 1.6 98 chr2R 9956053 intron Mef2 - chr2R 9956102 intron Mef2 - chr2R 9956151 intron Mef2 - chr2R_16_9955001 chr2R_9955001 RAL-340_100b 1040 chr2R 10017626 10017678 chr2R 10017730 10017782 26 101 8.5 7.5 8.0 2.9 156 chr2R 10017626 intron Pka-R2 - chr2R 10017704 intron Pka-R2 - chr2R 10017782 intron Pka-R2 - chr2R_26_10015001 chr2R_10015001 RAL-340_100b 1041 chr2R 10168329 10168342 chr2R 10168432 10168445 5 103 16.0 15.0 15.5 0.3 116 chr2R 10168329 intron KCNQ - chr2R 10168387 intron KCNQ - chr2R 10168445 intron KCNQ - chr2R_5_10165001 chr2R_10165001 RAL-340_100b 1042 chr2R 10168358 10168365 chr2R 10168435 10168451 6 93 10.0 15.5 12.8 0.4 93 chr2R 10168358 intron KCNQ - chr2R 10168404 intron KCNQ - chr2R 10168451 intron KCNQ - chr2R_6_10165001 chr2R_10165001 RAL-340_100b 1043 chr2R 10171085 10171138 chr2R 10171194 10171244 9 109 7.5 6.0 6.8 1.2 159 chr2R 10171085 intron KCNQ - chr2R 10171164 intron KCNQ - chr2R 10171244 intron KCNQ - chr2R_9_10170001 chr2R_10170001 RAL-340_100b 1044 chr2R 10176853 10176907 chr2R 10186048 10186102 roo 17 9193 4.0 5.5 4.8 2.9 9249 chr2R 10176853 intron KCNQ - chr2R 10181478 intron KCNQ - chr2R 10186102 intron KCNQ - chr2R_17_10180001 chr2R_10180001 RAL-340_100b 1045 chr2R 10189188 10189225 chr2R 10189291 10189326 11 103 8.5 4.5 6.5 1.5 138 chr2R 10189188 intron KCNQ - chr2R 10189257 intron KCNQ - chr2R 10189326 intron KCNQ - chr2R_11_10185001 chr2R_10185001 RAL-340_100b 1046 chr2R 10193200 10193231 chr2R 10193309 10193340 12 108 5.0 6.5 5.8 1.8 140 chr2R 10193200 intergenic not near genes chr2R 10193270 intergenic not near genes chr2R 10193340 intergenic not near genes chr2R_12_10190001 chr2R_10190001 RAL-340_100b 1047 chr2R 10266478 10266526 chr2R 10266585 10266630 14 108 9.5 4.5 7.0 1.8 152 chr2R 10266478 intron CG12910 + chr2R 10266554 intron CG12910 + chr2R 10266630 intron CG12910 + chr2R_14_10265001 chr2R_10265001 RAL-340_100b 1048 chr2R 10274799 10274816 chr2R 10274900 10274917 8 101 17.0 1.0 9.0 0.8 118 chr2R 10274799 intron CAP + chr2R 10274858 intron CAP + chr2R 10274917 intron CAP + chr2R_8_10270001 chr2R_10270001 RAL-340_100b 1049 chr2R 10313308 10313346 chr2R 10313409 10313459 12 106 7.5 3.5 5.5 1.8 151 chr2R 10313308 intergenic not near genes chr2R 10313384 intergenic not near genes chr2R 10313459 intergenic Ndg + chr2R_12_10310001 chr2R_10310001 RAL-340_100b 1050 chr2R 10322057 10322080 chr2R 10322164 10322186 9 105 4.5 14.0 9.2 0.9 129 chr2R 10322057 3` UTR Ndg + chr2R 10322122 intergenic Ndg + chr2R 10322186 intergenic Ndg + chr2R_9_10320001 chr2R_10320001 RAL-340_100b 1051 chr2R 10352649 10352705 chr2R 10352751 10352807 26 101 11.0 7.5 9.2 2.5 158 chr2R 10352649 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352728 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352807 intron,exon,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R_26_10350001 chr2R_10350001 RAL-340_100b 1052 chr2R 10387984 10387988 chr2R 10388097 10388110 5 120 0.0 17.5 8.8 0.5 126 chr2R 10387984 intron CG42732 - chr2R 10388047 intron CG42732 - chr2R 10388110 intron CG42732 - chr2R_5_10385001 chr2R_10385001 RAL-340_100b 1053 chr2R 10387997 10388003 chr2R 10388077 10388125 5 114 0.0 10.5 5.2 0.8 128 chr2R 10387997 intron CG42732 - chr2R 10388061 intron CG42732 - chr2R 10388125 intron CG42732 - chr2R_5_10385001 chr2R_10385001 RAL-340_100b 1054 chr2R 10409037 10409086 chr2R 10409139 10409187 16 101 1.0 4.5 2.8 4.2 150 chr2R 10409037 intron CG42732 - chr2R 10409112 intron CG42732 - chr2R 10409187 intron,exon CG42732 -,CG33477 - chr2R_16_10405001 chr2R_10405001 RAL-340_100b 1055 chr2R 10411778 10411837 chr2R 10411885 10411944 17 103 4.0 5.5 4.8 2.9 166 chr2R 10411778 intron CG42732 - chr2R 10411861 intron CG42732 - chr2R 10411944 intron CG42732 - chr2R_17_10410001 chr2R_10410001 RAL-340_100b 1056 chr2R 10417901 10417940 chr2R 10423678 10423684 6 5771 0.0 47.0 23.5 0.2 5783 chr2R 10417901 intergenic not near genes chr2R 10420792 exon CG11825 - chr2R 10423684 intergenic CG11825 - chr2R_6_10420001 chr2R_10420001 RAL-340_100b 1057 chr2R 10454088 10454100 chr2R 10454175 10454186 9 93 15.0 8.5 11.8 0.7 98 chr2R 10454088 intron,intron Galphao +,Cyp49a1 - chr2R 10454137 intron,intron Galphao +,Cyp49a1 - chr2R 10454186 intron,intron Galphao +,Cyp49a1 - chr2R_9_10450001 chr2R_10450001 RAL-340_100b 1058 chr2R 10454101 10454129 chr2R 10454172 10454191 22 92 8.5 10.5 9.5 2.1 90 chr2R 10454101 intron,intron Galphao +,Cyp49a1 - chr2R 10454146 intron,intron Galphao +,Cyp49a1 - chr2R 10454191 intron,intron Galphao +,Cyp49a1 - chr2R_22_10450001 chr2R_10450001 RAL-340_100b 1059 chr2R 10456165 10456210 chr2R 10456259 10456315 10 103 4.0 3.5 3.8 2.1 150 chr2R 10456165 intron,intron Galphao +,Cyp49a1 - chr2R 10456240 intron,intron Galphao +,Cyp49a1 - chr2R 10456315 intron,intron Galphao +,Cyp49a1 - chr2R_10_10455001 chr2R_10455001 RAL-340_100b 1060 chr2R 10469001 10469055 chr2R 10469149 10469196 31 146 3.0 15.0 9.0 3.1 195 chr2R 10469001 intron CG11777 + chr2R 10469098 intron CG11777 + chr2R 10469196 intron CG11777 + chr2R_31_10465001 chr2R_10465001 RAL-340_100b 1061 chr2R 10469640 10469650 chr2R 17710199 17710199 4 7240555 13.0 23.0 18.0 0.2 7240559 chr2R 10469640 3` UTR,3` UTR CG11777 +,whd - chr2R 14089920 intron Prosap - chr2R 17710199 intron CG6424 - chr2R_4_14085001 chr2R_14085001 RAL-340_100b 1062 chr2R 10548005 10548044 chr2R 10548110 10548111 5 91 17.0 8.5 12.8 0.4 106 chr2R 10548005 intergenic not near genes chr2R 10548058 intergenic not near genes chr2R 10548111 intergenic not near genes chr2R_5_10545001 chr2R_10545001 RAL-340_100b 1063 chr2R 10574599 10574633 chr2R 10574706 10574738 5 105 9.5 8.0 8.8 0.5 139 chr2R 10574599 intron psq + chr2R 10574668 intron psq + chr2R 10574738 intron psq + chr2R_5_10570001 chr2R_10570001 RAL-340_100b 1064 chr2R 10574635 10574639 chr2R 10574702 10574746 6 98 7.5 9.0 8.2 0.7 111 chr2R 10574635 intron psq + chr2R 10574690 intron psq + chr2R 10574746 intron psq + chr2R_6_10570001 chr2R_10570001 RAL-340_100b 1065 chr2R 10582088 10582135 chr2R 10582208 10582248 14 117 8.0 0.0 4.0 2.8 160 chr2R 10582088 intron psq + chr2R 10582168 intron psq + chr2R 10582248 intron psq + chr2R_14_10580001 chr2R_10580001 RAL-340_100b 1066 chr2R 10585574 10585590 chr2R 10594152 10594167 Tirant 11 8598 3.5 7.5 5.5 1.7 8593 chr2R 10585574 intron psq + chr2R 10589870 intron psq + chr2R 10594167 intron psq + chr2R_11_10585001 chr2R_10585001 RAL-340_100b 1067 chr2R 10617809 10617820 chr2R 10617914 10617925 9 103 25.5 6.0 15.8 0.5 116 chr2R 10617809 5` UTR CG11883 + chr2R 10617867 intron CG11883 + chr2R 10617925 intron CG11883 + chr2R_9_10615001 chr2R_10615001 RAL-340_100b 1068 chr2R 10617821 10617865 chr2R 10617913 10617942 23 98 13.0 6.0 9.5 2.2 121 chr2R 10617821 5` UTR CG11883 + chr2R 10617882 intron CG11883 + chr2R 10617942 intron CG11883 + chr2R_23_10615001 chr2R_10615001 RAL-340_100b 1069 chr2R 10622332 10622379 chr2R 10637122 10637138 mdg1 14 14782 5.0 12.0 8.5 1.5 14806 chr2R 10622332 intron CG11883 + chr2R 10629735 intron CG11883 + chr2R 10637138 intron CG11883 + chr2R_14_10625001 chr2R_10625001 RAL-340_100b 1070 chr2R 10658029 10658085 chr2R 10658146 10658202 43 115 6.0 15.0 10.5 3.7 173 chr2R 10658029 intergenic CR44452 - chr2R 10658116 intergenic not near genes chr2R 10658202 intergenic not near genes chr2R_43_10655001 chr2R_10655001 RAL-340_100b 1071 chr2R 10668046 10668083 chr2R 10668142 10668179 16 93 10.0 31.0 20.5 0.7 133 chr2R 10668046 intergenic not near genes chr2R 10668112 intergenic not near genes chr2R 10668179 intergenic not near genes chr2R_16_10665001 chr2R_10665001 RAL-340_100b 1072 chr2R 10672750 10672831 chr2R 10672928 10672981 5 161 0.0 1.0 0.5 3.3 231 chr2R 10672750 intergenic not near genes chr2R 10672866 intergenic stan + chr2R 10672981 intergenic stan + chr2R_5_10670001 chr2R_10670001 RAL-340_100b 1073 chr2R 10757518 10757574 chr2R 10757646 10757702 35 124 3.0 9.5 6.2 4.9 184 chr2R 10757518 5` UTR CG33144 - chr2R 10757610 intron CG33144 - chr2R 10757702 intron CG33144 - chr2R_35_10755001 chr2R_10755001 RAL-340_100b 1074 chr2R 10827306 10827362 chr2R 10827419 10827475 33 111 8.5 8.5 8.5 3.5 169 chr2R 10827306 exon CG12325 + chr2R 10827390 3` UTR CG12325 + chr2R 10827475 3` UTR,3` UTR CG12325 +,CG12344 - chr2R_33_10825001 chr2R_10825001 RAL-340_100b 1075 chr2R 10860577 10860589 chr2R 10860678 10860690 6 99 1.0 0.5 0.8 3.3 113 chr2R 10860577 intron CG30015 - chr2R 10860634 intron CG30015 - chr2R 10860690 intron CG30015 - chr2R_6_10860001 chr2R_10860001 RAL-340_100b 1076 chr2R 10874114 10874137 chr2R 10874275 10874301 17 181 9.0 9.0 9.0 1.7 187 chr2R 10874114 5` UTR CG30015 - chr2R 10874208 5` UTR CG30015 - chr2R 10874301 5` UTR CG30015 - chr2R_17_10870001 chr2R_10870001 RAL-340_100b 1077 chr2R 10914055 10914107 chr2R 10914157 10914171 23 97 7.5 0.0 3.8 4.8 116 chr2R 10914055 intergenic not near genes chr2R 10914113 intergenic not near genes chr2R 10914171 intergenic not near genes chr2R_23_10910001 chr2R_10910001 RAL-340_100b 1078 chr2R 10947068 10947119 chr2R 10947180 10947222 9 105 8.5 0.0 4.2 1.7 154 chr2R 10947068 5` UTR CR45228 + chr2R 10947145 intergenic CR45228 + chr2R 10947222 intergenic CR45228 + chr2R_9_10945001 chr2R_10945001 RAL-340_100b 1079 chr2R 10948022 10948042 chr2R 10955581 10955618 17.6 18 7569 30.5 21.0 25.8 0.7 7596 chr2R 10948022 intergenic not near genes chr2R 10951820 intergenic not near genes chr2R 10955618 intergenic not near genes chr2R_18_10950001 chr2R_10950001 RAL-340_100b 1080 chr2R 10948049 10948060 chr2R 10955580 10955626 17.6 7 7558 15.5 20.0 17.8 0.4 7577 chr2R 10948049 intergenic not near genes chr2R 10951838 intergenic not near genes chr2R 10955626 intergenic not near genes chr2R_7_10950001 chr2R_10950001 RAL-340_100b 1081 chr2R 10959069 10959077 chr2R 10959173 10959176 6 103 16.5 7.0 11.8 0.5 107 chr2R 10959069 intergenic not near genes chr2R 10959122 intergenic not near genes chr2R 10959176 intergenic not near genes chr2R_6_10955001 chr2R_10955001 RAL-340_100b 1082 chr2R 10959080 10959112 chr2R 10959169 10959211 10 101 2.0 4.5 3.2 2.4 131 chr2R 10959080 intergenic not near genes chr2R 10959146 intergenic not near genes chr2R 10959211 intergenic not near genes chr2R_10_10955001 chr2R_10955001 RAL-340_100b 1083 chr2R 10979649 10979686 chr2R 10980133 10980166 297 12 487 8.5 22.0 15.2 0.7 517 chr2R 10979649 intergenic not near genes chr2R 10979908 intergenic not near genes chr2R 10980166 intergenic not near genes chr2R_12_10975001 chr2R_10975001 RAL-340_100b 1084 chr2R 11009792 11009847 chr2R 11018991 11019039 roo 32 9189 5.5 6.0 5.8 4.7 9247 chr2R 11009792 intron luna - chr2R 11014416 intron luna - chr2R 11019039 intron luna - chr2R_32_11010001 chr2R_11010001 RAL-340_100b 1085 chr2R 11019860 11019895 chr2R 11024951 11024986 jockey 10 5088 8.0 11.5 9.8 0.9 5126 chr2R 11019860 intron luna - chr2R 11022423 intron luna - chr2R 11024986 intron luna - chr2R_10_11020001 chr2R_11020001 RAL-340_100b 1086 chr2R 11019897 11019907 chr2R 11024947 11024970 jockey 7 5073 6.0 11.0 8.5 0.7 5073 chr2R 11019897 intron luna - chr2R 11022434 intron luna - chr2R 11024970 intron luna - chr2R_7_11020001 chr2R_11020001 RAL-340_100b 1087 chr2R 11032622 11032665 chr2R 11032741 11032784 19 116 10.5 8.5 9.5 1.8 162 chr2R 11032622 intron luna - chr2R 11032703 intron luna - chr2R 11032784 intron luna - chr2R_19_11030001 chr2R_11030001 RAL-340_100b 1088 chr2R 11066455 11066464 chr2R 11066558 11066567 4 103 8.0 26.5 17.2 0.2 112 chr2R 11066455 intron luna - chr2R 11066511 intron luna - chr2R 11066567 intron luna - chr2R_4_11065001 chr2R_11065001 RAL-340_100b 1089 chr2R 11097338 11097383 chr2R 11097468 11097513 16 120 4.0 6.5 5.2 2.6 175 chr2R 11097338 intron luna - chr2R 11097426 intron luna - chr2R 11097513 intron luna - chr2R_16_11095001 chr2R_11095001 RAL-340_100b 1090 chr2R 11102840 11102849 chr2R 11102947 11102956 9 106 37.0 0.0 18.5 0.5 116 chr2R 11102840 intron luna - chr2R 11102898 intron luna - chr2R 11102956 intron luna - chr2R_9_11100001 chr2R_11100001 RAL-340_100b 1091 chr2R 11102857 11102878 chr2R 11102949 11102955 11 97 17.5 0.0 8.8 1.1 98 chr2R 11102857 intron luna - chr2R 11102906 intron luna - chr2R 11102955 intron luna - chr2R_11_11100001 chr2R_11100001 RAL-340_100b 1092 chr2R 11134096 11134139 chr2R 11134362 11134405 pogo 12 261 1.5 6.0 3.8 2.5 309 chr2R 11134096 intergenic not near genes chr2R 11134250 intergenic not near genes chr2R 11134405 intergenic not near genes chr2R_12_11130001 chr2R_11130001 RAL-340_100b 1093 chr2R 11179244 11179285 chr2R 11179355 11179396 14 106 8.0 4.5 6.2 1.9 152 chr2R 11179244 intron shn + chr2R 11179320 intron shn + chr2R 11179396 intron shn + chr2R_14_11175001 chr2R_11175001 RAL-340_100b 1094 chr2R 11207807 11207838 chr2R 11208012 11208056 BS 13 215 14.5 16.5 15.5 0.8 249 chr2R 11207807 intron shn + chr2R 11207932 intron shn + chr2R 11208056 intron shn + chr2R_13_11205001 chr2R_11205001 RAL-340_100b 1095 chr2R 11297620 11297632 chr2R 11301950 11301978 flea 6 4343 16.0 25.0 20.5 0.3 4358 chr2R 11297620 intergenic CG42336 - chr2R 11299799 intergenic not near genes chr2R 11301978 5` UTR CG7741 + chr2R_6_11295001 chr2R_11295001 RAL-340_100b 1096 chr2R 11297634 11297641 chr2R 11301939 11301987 flea 7 4339 14.0 20.0 17.0 0.4 4353 chr2R 11297634 intergenic CG42336 - chr2R 11299810 intergenic not near genes chr2R 11301987 5` UTR CG7741 + chr2R_7_11295001 chr2R_11295001 RAL-340_100b 1097 chr2R 11344148 11344151 chr2R 11344269 11344272 4 121 0.0 8.5 4.2 0.8 124 chr2R 11344148 intergenic alphaTry - chr2R 11344210 intergenic alphaTry - chr2R 11344272 3` UTR alphaTry - chr2R_4_11340001 chr2R_11340001 RAL-340_100b 1098 chr2R 11366149 11366152 chr2R 11366253 11366256 5 104 22.5 8.5 15.5 0.3 107 chr2R 11366149 intergenic not near genes chr2R 11366202 intergenic not near genes chr2R 11366256 intergenic CG13204 + chr2R_5_11365001 chr2R_11365001 RAL-340_100b 1099 chr2R 11366153 11366166 chr2R 11366252 11366259 6 101 21.0 8.0 14.5 0.4 106 chr2R 11366153 intergenic not near genes chr2R 11366206 intergenic not near genes chr2R 11366259 intergenic CG13204 + chr2R_6_11365001 chr2R_11365001 RAL-340_100b 1100 chr2R 11368016 11368059 chr2R 11368117 11368160 14 97 3.0 8.5 5.8 2.1 144 chr2R 11368016 intron CG13204 + chr2R 11368088 intron CG13204 + chr2R 11368160 intron CG13204 + chr2R_14_11365001 chr2R_11365001 RAL-340_100b 1101 chr2R 11415504 11415550 chr2R 11418666 11418704 opus 10 3161 5.0 7.0 6.0 1.4 3200 chr2R 11415504 intron Drip - chr2R 11417104 intron Drip - chr2R 11418704 intron Drip - chr2R_10_11415001 chr2R_11415001 RAL-340_100b 1102 chr2R 11436611 11436618 chr2R 11436742 11436749 4 131 0.5 22.0 11.2 0.3 138 chr2R 11436611 intron CG7777 + chr2R 11436680 intron CG7777 + chr2R 11436749 intron CG7777 + chr2R_4_11435001 chr2R_11435001 RAL-340_100b 1103 chr2R 1320201 1320201 chr2R 11463556 11463556 invader1 6 10143355 112.5 44.0 78.2 0.1 10143355 chr2R 1320201 intergenic not near genes chr2R 6391878 intergenic not near genes chr2R 11463556 3` UTR E(Pc) + chr2R_6_6390001 chr2R_6390001 RAL-340_100b 1104 chr2R 11472624 11472678 chr2R 11473846 11473900 pogo 33 1220 13.0 6.0 9.5 3.1 1276 chr2R 11472624 intergenic not near genes chr2R 11473262 intergenic not near genes chr2R 11473900 intergenic not near genes chr2R_33_11470001 chr2R_11470001 RAL-340_100b 1105 chr2R 11577204 11577215 chr2R 11577309 11577320 4 105 17.0 8.0 12.5 0.3 116 chr2R 11577204 intergenic not near genes chr2R 11577262 intergenic not near genes chr2R 11577320 intergenic not near genes chr2R_4_11575001 chr2R_11575001 RAL-340_100b 1106 chr2R 11577227 11577255 chr2R 11577302 11577360 14 90 9.0 7.5 8.2 1.5 133 chr2R 11577227 intergenic not near genes chr2R 11577294 intergenic not near genes chr2R 11577360 intergenic not near genes chr2R_14_11575001 chr2R_11575001 RAL-340_100b 1107 chr2R 11600578 11600628 chr2R 11600687 11600737 30 102 8.5 5.5 7.0 3.8 159 chr2R 11600578 intron tou - chr2R 11600658 intron tou - chr2R 11600737 intron tou - chr2R_30_11600001 chr2R_11600001 RAL-340_100b 1108 chr2R 11631372 11631406 chr2R 11631477 11631511 9 103 0.0 3.0 1.5 3.6 139 chr2R 11631372 intron CG9005 - chr2R 11631442 intron CG9005 - chr2R 11631511 intron CG9005 - chr2R_9_11630001 chr2R_11630001 RAL-340_100b 1109 chr2R 11672836 11672847 chr2R 11672938 11672959 11 110 9.0 6.5 7.8 1.2 123 chr2R 11672836 intron,exon Roc2 -,Tret1-1 + chr2R 11672898 intron,intron Roc2 -,Tret1-1 + chr2R 11672959 intron,intron Roc2 -,Tret1-1 + chr2R_11_11670001 chr2R_11670001 RAL-340_100b 1110 chr2R 11672683 11672708 chr2R 11676136 11676154 4 3440 32.0 22.5 27.2 0.1 3471 chr2R 11672683 intron,intron Roc2 -,Tret1-1 + chr2R 11674418 intron,exon Roc2 -,Tret1-1 + chr2R 11676154 intron,intron Roc2 -,Tret1-2 + chr2R_4_11670001 chr2R_11670001 RAL-340_100b 1111 chr2R 11724134 11724176 chr2R 11724242 11724284 11 107 8.5 11.0 9.8 1.0 150 chr2R 11724134 intron pyr + chr2R 11724209 intron pyr + chr2R 11724284 intron pyr + chr2R_11_11720001 chr2R_11720001 RAL-340_100b 1112 chr2R 11724178 11724184 chr2R 11724281 11724292 6 107 7.5 25.0 16.2 0.3 114 chr2R 11724178 intron pyr + chr2R 11724235 intron pyr + chr2R 11724292 intron pyr + chr2R_6_11720001 chr2R_11720001 RAL-340_100b 1113 chr2R 11792992 11793028 chr2R 11793091 11793150 4 110 10.5 1.0 5.8 0.6 158 chr2R 11792992 intron ths + chr2R 11793071 intron ths + chr2R 11793150 intron ths + chr2R_4_11790001 chr2R_11790001 RAL-340_100b 1114 chr2R 11839527 11839551 chr2R 11839633 11839652 7 104 19.5 22.5 21.0 0.3 125 chr2R 11839527 5` UTR Sobp - chr2R 11839590 5` UTR Sobp - chr2R 11839652 5` UTR Sobp - chr2R_7_11835001 chr2R_11835001 RAL-340_100b 1115 chr2R 11863836 11863887 chr2R 11863948 11863991 10 111 7.5 5.0 6.2 1.4 155 chr2R 11863836 intergenic CG42531 + chr2R 11863914 intergenic CG42531 + chr2R 11863991 intergenic CG42531 + chr2R_10_11860001 chr2R_11860001 RAL-340_100b 1116 chr2R 11932554 11932565 chr2R 11932696 11932707 4 142 8.5 8.0 8.2 0.4 153 chr2R 11932554 intergenic not near genes chr2R 11932630 intergenic not near genes chr2R 11932707 intergenic not near genes chr2R_4_11930001 chr2R_11930001 RAL-340_100b 1117 chr2R 11932568 11932587 chr2R 11932692 11932699 12 134 4.5 7.0 5.8 1.8 131 chr2R 11932568 intergenic not near genes chr2R 11932634 intergenic not near genes chr2R 11932699 intergenic not near genes chr2R_12_11930001 chr2R_11930001 RAL-340_100b 1118 chr2R 12061032 12061087 chr2R 12061137 12061193 6 92 2.5 0.5 1.5 2.4 161 chr2R 12061032 intron Drep-3 + chr2R 12061112 intron Drep-3 + chr2R 12061193 intron Drep-3 + chr2R_6_12060001 chr2R_12060001 RAL-340_100b 1119 chr2R 12087265 12087273 chr2R 12087354 12087379 9 105 21.0 34.5 27.8 0.3 114 chr2R 12087265 3` UTR jeb - chr2R 12087322 3` UTR jeb - chr2R 12087379 3` UTR jeb - chr2R_9_12085001 chr2R_12085001 RAL-340_100b 1120 chr2R 12093930 12093981 chr2R 12094063 12094119 25 130 8.0 7.5 7.8 2.8 189 chr2R 12093930 intron jeb - chr2R 12094024 intron jeb - chr2R 12094119 intron jeb - chr2R_25_12090001 chr2R_12090001 RAL-340_100b 1121 chr2R 12108078 12108151 chr2R 12108208 12108218 4 100 0.0 0.0 0.0 4.0 140 chr2R 12108078 intron jeb - chr2R 12108148 intron jeb - chr2R 12108218 intron jeb - chr2R_4_12105001 chr2R_12105001 RAL-340_100b 1122 chr2R 12146455 12146503 chr2R 12147591 12147610 15 1135 56.5 43.5 50.0 0.3 1155 chr2R 12146455 intron,3` UTR Hen1 +,CG8878 - chr2R 12147032 intron,exon Hen1 +,CG8878 - chr2R 12147610 intron,exon Hen1 +,CG8878 - chr2R_15_12145001 chr2R_12145001 RAL-340_100b 1123 chr2R 12145919 12145955 chr2R 12148591 12148640 25 2675 44.5 51.5 48.0 0.5 2721 chr2R 12145919 exon Hen1 + chr2R 12147280 intron,intron Hen1 +,CG8878 - chr2R 12148640 intron,exon Hen1 +,CG8878 - chr2R_25_12145001 chr2R_12145001 RAL-340_100b 1124 chr2R 12185975 12186037 chr2R 12186095 12186131 34 112 5.5 6.0 5.8 5.0 156 chr2R 12185975 intron Cyp6g1 + chr2R 12186053 intron Cyp6g1 + chr2R 12186131 intron Cyp6g1 + chr2R_34_12185001 chr2R_12185001 RAL-340_100b 1125 chr2R 12185226 12185241 chr2R 12188126 12188143 4 2900 54.5 137.0 95.8 0.0 2917 chr2R 12185226 3` UTR,exon CG13175 +,CG33964 + chr2R 12186684 exon Cyp6g1 + chr2R 12188143 3` UTR Cyp6g1 + chr2R_4_12185001 chr2R_12185001 RAL-340_100b 1126 chr2R 12187474 12187499 chr2R 12190075 12190096 12 2598 152.5 98.0 125.2 0.1 2622 chr2R 12187474 exon Cyp6g1 + chr2R 12188785 exon Cyp6g2 - chr2R 12190096 exon Cyp6g2 - chr2R_12_12185001 chr2R_12185001 RAL-340_100b 1127 chr2R 12187471 12187531 chr2R 12190097 12190122 43 2605 191.5 82.0 136.8 0.3 2651 chr2R 12187471 exon Cyp6g1 + chr2R 12188796 exon Cyp6g2 - chr2R 12190122 exon Cyp6g2 - chr2R_43_12185001 chr2R_12185001 RAL-340_100b 1128 chr2R 12210110 12210164 chr2R 12210216 12210270 26 101 7.0 10.0 8.5 2.7 160 chr2R 12210110 exon Sr-CII - chr2R 12210190 intron Sr-CII - chr2R 12210270 exon Sr-CII - chr2R_26_12210001 chr2R_12210001 RAL-340_100b 1129 chr2R 12236206 12236219 chr2R 12236322 12236334 12 114 9.5 8.5 9.0 1.2 128 chr2R 12236206 intergenic not near genes chr2R 12236270 intergenic not near genes chr2R 12236334 intergenic not near genes chr2R_12_12235001 chr2R_12235001 RAL-340_100b 1130 chr2R 12236221 12236232 chr2R 12236321 12236333 6 108 6.0 8.5 7.2 0.7 112 chr2R 12236221 intergenic not near genes chr2R 12236277 intergenic not near genes chr2R 12236333 intergenic not near genes chr2R_6_12235001 chr2R_12235001 RAL-340_100b 1131 chr2R 12240735 12240769 chr2R 12240836 12240836 5 94 6.5 0.0 3.2 1.2 101 chr2R 12240735 exon CG13170 + chr2R 12240786 3` UTR CG13170 + chr2R 12240836 intergenic CG13170 +,CG43315 + chr2R_5_12240001 chr2R_12240001 RAL-340_100b 1132 chr2R 12255702 12255747 chr2R 12255846 12255891 16 143 3.5 7.0 5.2 2.6 189 chr2R 12255702 intergenic CG13168 + chr2R 12255796 intergenic CG13168 + chr2R 12255891 intergenic CG13168 + chr2R_16_12255001 chr2R_12255001 RAL-340_100b 1133 chr2R 12279034 12279059 chr2R 12279172 12279197 12 137 4.5 14.5 9.5 1.1 163 chr2R 12279034 intergenic Cam + chr2R 12279116 intergenic Cam + chr2R 12279197 intergenic Cam + chr2R_12_12275001 chr2R_12275001 RAL-340_100b 1134 chr2R 12334863 12334901 chr2R 12334966 12334977 9 99 10.0 10.5 10.2 0.8 114 chr2R 12334863 intergenic CG8490 + chr2R 12334920 intergenic CG8490 + chr2R 12334977 intergenic CG8490 + chr2R_9_12330001 chr2R_12330001 RAL-340_100b 1135 chr2R 12363371 12363403 chr2R 12363821 12363857 12 454 13.5 1.5 7.5 1.4 486 chr2R 12363371 intergenic CG30043 + chr2R 12363614 intergenic CG30043 + chr2R 12363857 intergenic not near genes chr2R_12_12360001 chr2R_12360001 RAL-340_100b 1136 chr2R 12385338 12385356 chr2R 12385444 12385460 9 105 0.0 8.5 4.2 1.7 122 chr2R 12385338 intergenic not near genes chr2R 12385399 intergenic not near genes chr2R 12385460 intergenic not near genes chr2R_9_12385001 chr2R_12385001 RAL-340_100b 1137 chr2R 12385357 12385379 chr2R 12385438 12385439 17 94 0.0 6.0 3.0 4.2 82 chr2R 12385357 intergenic not near genes chr2R 12385398 intergenic not near genes chr2R 12385439 intergenic not near genes chr2R_17_12385001 chr2R_12385001 RAL-340_100b 1138 chr2R 12481146 12481170 chr2R 12482944 12482954 roo 15 1813 6.0 9.5 7.8 1.7 1808 chr2R 12481146 exon Dh44-R2 + chr2R 12482050 intron Dh44-R2 + chr2R 12482954 intron Dh44-R2 + chr2R_15_12480001 chr2R_12480001 RAL-340_100b 1139 chr2R 12501680 12501691 chr2R 12503851 12503877 Rt1c 5 2180 17.5 14.5 16.0 0.3 2197 chr2R 12501680 intron fdl - chr2R 12502778 intron fdl - chr2R 12503877 intron fdl - chr2R_5_12500001 chr2R_12500001 RAL-340_100b 1140 chr2R 12501706 12501709 chr2R 12503882 12503896 Rt1c 4 2184 11.5 21.5 16.5 0.2 2190 chr2R 12501706 intron fdl - chr2R 12502801 intron fdl - chr2R 12503896 intron fdl - chr2R_4_12500001 chr2R_12500001 RAL-340_100b 1141 chr2R 12501714 12501721 chr2R 12503857 12503863 Rt1c 12 2166 7.0 17.5 12.2 0.9 2149 chr2R 12501714 intron fdl - chr2R 12502788 intron fdl - chr2R 12503863 intron fdl - chr2R_12_12500001 chr2R_12500001 RAL-340_100b 1142 chr2R 12501722 12501728 chr2R 12503854 12503879 Rt1c 11 2156 5.5 16.0 10.8 0.9 2157 chr2R 12501722 intron fdl - chr2R 12502800 intron fdl - chr2R 12503879 intron fdl - chr2R_11_12500001 chr2R_12500001 RAL-340_100b 1143 chr2R 12565268 12565313 chr2R 12565378 12565423 16 106 9.0 0.5 4.8 2.8 155 chr2R 12565268 intergenic CG33775 - chr2R 12565346 intergenic CG33775 - chr2R 12565423 intergenic not near genes chr2R_16_12565001 chr2R_12565001 RAL-340_100b 1144 chr2R 12565547 12565553 chr2R 12565945 12565951 5 401 0.0 4.0 2.0 1.7 404 chr2R 12565547 intergenic not near genes chr2R 12565749 intergenic Cyp301a1 + chr2R 12565951 intergenic Cyp301a1 + chr2R_5_12565001 chr2R_12565001 RAL-340_100b 1145 chr2R 12565557 12565592 chr2R 12565944 12565966 4 372 0.0 4.0 2.0 1.3 409 chr2R 12565557 intergenic not near genes chr2R 12565762 intergenic Cyp301a1 + chr2R 12565966 intergenic Cyp301a1 + chr2R_4_12565001 chr2R_12565001 RAL-340_100b 1146 chr2R 12625508 12625538 chr2R 12625608 12625641 10 103 1.5 11.5 6.5 1.3 133 chr2R 12625508 intergenic CG30054 +,CG17760 + chr2R 12625574 intergenic CG30054 +,CG17760 + chr2R 12625641 intergenic CG17760 +,CG30054 + chr2R_10_12625001 chr2R_12625001 RAL-340_100b 1147 chr2R 12707497 12707525 chr2R 12715888 12715916 roo 9 8391 11.5 15.0 13.2 0.6 8419 chr2R 12707497 intron CG42663 + chr2R 12711706 intron CG42663 + chr2R 12715916 intron CG42663 + chr2R_9_12710001 chr2R_12710001 RAL-340_100b 1148 chr2R 12707529 12707548 chr2R 12715883 12715939 roo 14 8381 8.0 13.0 10.5 1.2 8410 chr2R 12707529 intron CG42663 + chr2R 12711734 intron CG42663 + chr2R 12715939 intron CG42663 + chr2R_14_12710001 chr2R_12710001 RAL-340_100b 1149 chr2R 12728560 12728574 chr2R 12728670 12728684 5 109 12.5 2.0 7.2 0.6 124 chr2R 12728560 intron CG42663 + chr2R 12728622 intron CG42663 + chr2R 12728684 intron CG42663 + chr2R_5_12725001 chr2R_12725001 RAL-340_100b 1150 chr2R 12733020 12733049 chr2R 12733123 12733152 13 102 3.5 10.5 7.0 1.6 132 chr2R 12733020 intron CG42663 + chr2R 12733086 intron CG42663 + chr2R 12733152 intron CG42663 + chr2R_13_12730001 chr2R_12730001 RAL-340_100b 1151 chr2R 12789270 12789282 chr2R 12797656 12797664 roo 5 8386 26.0 11.0 18.5 0.3 8394 chr2R 12789270 intron,3` UTR sca +,CR45137 - chr2R 12793467 intron,intron sca +,CR45137 - chr2R 12797664 intron,3` UTR sca +,CR45137 - chr2R_5_12790001 chr2R_12790001 RAL-340_100b 1152 chr2R 12789284 12789328 chr2R 12797655 12797705 roo 21 8377 6.5 10.0 8.2 2.3 8421 chr2R 12789284 intron,3` UTR sca +,CR45137 - chr2R 12793494 intron,intron sca +,CR45137 - chr2R 12797705 intron,3` UTR sca +,CR45137 - chr2R_21_12790001 chr2R_12790001 RAL-340_100b 1153 chr2R 12819426 12819479 chr2R 12824520 12824563 jockey 39 5090 11.0 28.5 19.8 1.9 5137 chr2R 12819426 intergenic not near genes chr2R 12821994 intergenic not near genes chr2R 12824563 intergenic not near genes chr2R_39_12820001 chr2R_12820001 RAL-340_100b 1154 chr2R 12833338 12833355 chr2R 12833579 12833596 5 241 13.0 8.0 10.5 0.4 258 chr2R 12833338 intergenic not near genes chr2R 12833467 intergenic not near genes chr2R 12833596 intergenic not near genes chr2R_5_12830001 chr2R_12830001 RAL-340_100b 1155 chr2R 12833358 12833372 chr2R 12833574 12833613 8 235 10.5 6.5 8.5 0.8 255 chr2R 12833358 intergenic not near genes chr2R 12833486 intergenic not near genes chr2R 12833613 intergenic not near genes chr2R_8_12830001 chr2R_12830001 RAL-340_100b 1156 chr2R 12836361 12836412 chr2R 12836473 12836518 21 110 4.0 5.5 4.8 3.6 157 chr2R 12836361 intergenic not near genes chr2R 12836440 intergenic not near genes chr2R 12836518 intergenic not near genes chr2R_21_12835001 chr2R_12835001 RAL-340_100b 1157 chr2R 12844682 12844736 chr2R 12844798 12844839 24 115 5.5 8.0 6.8 3.1 157 chr2R 12844682 3` UTR Or49b + chr2R 12844760 intergenic Or49b + chr2R 12844839 intergenic Or49b + chr2R_24_12840001 chr2R_12840001 RAL-340_100b 1158 chr2R 13073601 13073603 chr2R 13073978 13073990 4 381 0.5 31.0 15.8 0.2 389 chr2R 13073601 intron Drl-2 - chr2R 13073796 intron Drl-2 - chr2R 13073990 intron Drl-2 - chr2R_4_13070001 chr2R_13070001 RAL-340_100b 1159 chr2R 13136820 13136865 chr2R 13141643 13141682 Doc 33 4820 9.5 19.5 14.5 2.1 4862 chr2R 13136820 exon Cap-G + chr2R 13139251 intron Cap-G + chr2R 13141682 intron Cap-G + chr2R_33_13135001 chr2R_13135001 RAL-340_100b 1160 chr2R 13167409 13167436 chr2R 13167528 13167555 7 115 18.5 0.5 9.5 0.7 146 chr2R 13167409 intron GLaz - chr2R 13167482 intron GLaz - chr2R 13167555 intron GLaz - chr2R_7_13165001 chr2R_13165001 RAL-340_100b 1161 chr2R 13196543 13196597 chr2R 13197051 13197106 18 506 4.0 5.0 4.5 3.3 563 chr2R 13196543 intergenic not near genes chr2R 13196824 intergenic not near genes chr2R 13197106 intergenic not near genes chr2R_18_13195001 chr2R_13195001 RAL-340_100b 1162 chr2R 13194623 13194638 chr2R 13204541 13204567 6 9919 57.0 44.0 50.5 0.1 9944 chr2R 13194623 intergenic not near genes chr2R 13199595 exon Aats-val + chr2R 13204567 3` UTR,exon CG34315 -,lat - chr2R_6_13195001 chr2R_13195001 RAL-340_100b 1163 chr2R 13218281 13218317 chr2R 13218389 13218437 12 108 12.0 0.5 6.2 1.7 156 chr2R 13218281 intron CG4630 - chr2R 13218359 intron CG4630 - chr2R 13218437 intron CG4630 - chr2R_12_13215001 chr2R_13215001 RAL-340_100b 1164 chr2R 13249550 13249599 chr2R 13249663 13249683 20 107 17.5 4.0 10.8 1.7 133 chr2R 13249550 intron CG4712 - chr2R 13249616 intron CG4712 - chr2R 13249683 intron CG4712 - chr2R_20_13245001 chr2R_13245001 RAL-340_100b 1165 chr2R 13261131 13261179 chr2R 13261251 13261299 11 120 1.5 12.0 6.8 1.4 168 chr2R 13261131 intron CG42319 + chr2R 13261215 intron CG42319 + chr2R 13261299 intron CG42319 + chr2R_11_13260001 chr2R_13260001 RAL-340_100b 1166 chr2R 13309659 13309677 chr2R 13309791 13309820 7 140 4.5 8.0 6.2 1.0 161 chr2R 13309659 intergenic not near genes chr2R 13309740 intergenic not near genes chr2R 13309820 intergenic not near genes chr2R_7_13305001 chr2R_13305001 RAL-340_100b 1167 chr2R 13348964 13349003 chr2R 13349070 13349109 21 104 10.5 1.0 5.8 3.1 145 chr2R 13348964 intron CR44206 - chr2R 13349036 intron CR44206 - chr2R 13349109 intron CR44206 - chr2R_21_13345001 chr2R_13345001 RAL-340_100b 1168 chr2R 13356489 13356521 chr2R 13356588 13356616 15 105 10.0 1.0 5.5 2.3 127 chr2R 13356489 intergenic not near genes chr2R 13356552 intergenic not near genes chr2R 13356616 intergenic not near genes chr2R_15_13355001 chr2R_13355001 RAL-340_100b 1169 chr2R 13368733 13368781 chr2R 13368869 13368902 7 134 4.5 0.5 2.5 2.0 169 chr2R 13368733 intergenic not near genes chr2R 13368818 intergenic not near genes chr2R 13368902 intergenic not near genes chr2R_7_13365001 chr2R_13365001 RAL-340_100b 1170 chr2R 13369626 13369766 chr2R 13369749 13369867 21 106 0.0 0.0 0.0 21.0 241 chr2R 13369626 intergenic not near genes chr2R 13369746 intergenic not near genes chr2R 13369867 intergenic not near genes chr2R_21_13365001 chr2R_13365001 RAL-340_100b 1171 chr2R 13430458 13430495 chr2R 13430689 13430726 6 228 6.5 13.0 9.8 0.6 268 chr2R 13430458 intron CG42321 - chr2R 13430592 intron CG42321 - chr2R 13430726 intron CG42321 - chr2R_6_13430001 chr2R_13430001 RAL-340_100b 1172 chr2R 13431488 13431519 chr2R 13431592 13431623 19 103 5.0 7.0 6.0 2.7 135 chr2R 13431488 intron CG42321 - chr2R 13431556 intron CG42321 - chr2R 13431623 intron CG42321 - chr2R_19_13430001 chr2R_13430001 RAL-340_100b 1173 chr2R 13432916 13432966 chr2R 13433016 13433067 9 100 4.0 7.5 5.8 1.3 151 chr2R 13432916 intron CG42321 - chr2R 13432992 intron CG42321 - chr2R 13433067 intron,5` UTR CG42321 -,CG30065 + chr2R_9_13430001 chr2R_13430001 RAL-340_100b 1174 chr2R 13439098 13439230 chr2R 13439227 13439309 15 154 2.0 0.0 1.0 7.5 211 chr2R 13439098 intergenic CG42321 -,cnn - chr2R 13439204 intergenic cnn -,CG42321 - chr2R 13439309 intergenic cnn -,CG42321 - chr2R_15_13435001 chr2R_13435001 RAL-340_100b 1175 chr2R 13544548 13544588 chr2R 13544639 13544689 9 99 0.5 5.0 2.8 2.4 141 chr2R 13544548 intron CG6145 - chr2R 13544618 intron CG6145 - chr2R 13544689 intron CG6145 - chr2R_9_13540001 chr2R_13540001 RAL-340_100b 1176 chr2R 13547066 13547102 chr2R 13547283 13547322 8 218 6.0 3.5 4.8 1.4 256 chr2R 13547066 intron CG6145 - chr2R 13547194 intron CG6145 - chr2R 13547322 intron CG6145 - chr2R_8_13545001 chr2R_13545001 RAL-340_100b 1177 chr2R 13560011 13560012 chr2R 13793252 13793274 4 233253 40.0 26.5 33.2 0.1 233263 chr2R 13560011 3` UTR CG13334 + chr2R 13676642 intron fas + chr2R 13793274 intergenic not near genes chr2R_4_13675001 chr2R_13675001 RAL-340_100b 1178 chr2R 13568151 13568192 chr2R 13568259 13568298 7 107 12.0 4.0 8.0 0.8 147 chr2R 13568151 intergenic not near genes chr2R 13568224 intergenic not near genes chr2R 13568298 intergenic not near genes chr2R_7_13565001 chr2R_13565001 RAL-340_100b 1179 chr2R 13580488 13580526 chr2R 13580848 13580901 jockey 13 370 3.0 5.5 4.2 2.5 413 chr2R 13580488 3` UTR CG6191 - chr2R 13580694 3` UTR,3` UTR CG6191 -,CG45088 - chr2R 13580901 3` UTR,3` UTR CG6191 -,CG45088 - chr2R_13_13580001 chr2R_13580001 RAL-340_100b 1180 chr2R 13601345 13601401 chr2R 13601472 13601517 32 122 7.0 13.0 10.0 2.9 172 chr2R 13601345 intergenic CG43058 - chr2R 13601431 intergenic CG43058 - chr2R 13601517 intergenic CG43058 - chr2R_32_13600001 chr2R_13600001 RAL-340_100b 1181 chr2R 13632290 13632315 chr2R 13632403 13632404 12 109 21.5 14.5 18.0 0.6 114 chr2R 13632290 intron fas + chr2R 13632347 intron fas + chr2R 13632404 intron fas + chr2R_12_13630001 chr2R_13630001 RAL-340_100b 1182 chr2R 13694602 13694653 chr2R 13694704 13694752 28 100 8.0 11.0 9.5 2.7 150 chr2R 13694602 intron fas + chr2R 13694677 intron fas + chr2R 13694752 intron fas + chr2R_28_13690001 chr2R_13690001 RAL-340_100b 1183 chr2R 13709833 13709854 chr2R 13709951 13709972 10 117 5.0 21.0 13.0 0.7 139 chr2R 13709833 intron fas + chr2R 13709902 intron fas + chr2R 13709972 intron fas + chr2R_10_13705001 chr2R_13705001 RAL-340_100b 1184 chr2R 13728111 13728156 chr2R 13735793 13735838 opus 7 7676 4.5 3.5 4.0 1.4 7727 chr2R 13728111 intron fas + chr2R 13731974 intron fas + chr2R 13735838 intron fas + chr2R_7_13730001 chr2R_13730001 RAL-340_100b 1185 chr2R 13739361 13739419 chr2R 13739474 13739490 26 100 11.5 5.0 8.2 2.8 129 chr2R 13739361 intron fas + chr2R 13739426 intron fas + chr2R 13739490 intron fas + chr2R_26_13735001 chr2R_13735001 RAL-340_100b 1186 chr2R 13752810 13752828 chr2R 13752903 13752951 12 120 6.0 14.0 10.0 1.1 141 chr2R 13752810 intergenic not near genes chr2R 13752880 intergenic not near genes chr2R 13752951 intergenic not near genes chr2R_12_13750001 chr2R_13750001 RAL-340_100b 1187 chr2R 13768973 13769009 chr2R 13769080 13769122 21 118 6.0 11.0 8.5 2.2 149 chr2R 13768973 intergenic not near genes chr2R 13769048 intergenic not near genes chr2R 13769122 intergenic not near genes chr2R_21_13765001 chr2R_13765001 RAL-340_100b 1188 chr2R 13790312 13790316 chr2R 13790413 13790417 4 101 13.5 0.5 7.0 0.5 105 chr2R 13790312 intergenic not near genes chr2R 13790364 intergenic not near genes chr2R 13790417 intergenic not near genes chr2R_4_13790001 chr2R_13790001 RAL-340_100b 1189 chr2R 13793123 13793148 chr2R 13793224 13793249 17 98 28.0 15.0 21.5 0.8 126 chr2R 13793123 intergenic not near genes chr2R 13793186 intergenic not near genes chr2R 13793249 intergenic not near genes chr2R_17_13790001 chr2R_13790001 RAL-340_100b 1190 chr2R 13793150 13793161 chr2R 13793222 13793262 18 95 20.5 14.5 17.5 1.0 112 chr2R 13793150 intergenic not near genes chr2R 13793206 intergenic not near genes chr2R 13793262 intergenic not near genes chr2R_18_13790001 chr2R_13790001 RAL-340_100b 1191 chr2R 13888751 13888763 chr2R 13888843 13888865 11 99 14.5 0.0 7.2 1.3 114 chr2R 13888751 intron shot - chr2R 13888808 intron shot - chr2R 13888865 intron shot - chr2R_11_13885001 chr2R_13885001 RAL-340_100b 1192 chr2R 13888781 13888792 chr2R 13888857 13888900 12 111 7.5 0.0 3.8 2.5 119 chr2R 13888781 intron shot - chr2R 13888840 intron shot - chr2R 13888900 intron shot - chr2R_12_13885001 chr2R_13885001 RAL-340_100b 1193 chr2R 13905598 13905627 chr2R 13907583 13907634 Rt1a 11 2000 10.5 7.5 9.0 1.1 2036 chr2R 13905598 intron shot - chr2R 13906616 intron shot - chr2R 13907634 intron shot - chr2R_11_13905001 chr2R_13905001 RAL-340_100b 1194 chr2R 13924449 13924457 chr2R 13924591 13924599 5 142 7.5 1.5 4.5 0.9 150 chr2R 13924449 intron shot - chr2R 13924524 intron shot - chr2R 13924599 intron shot - chr2R_5_13920001 chr2R_13920001 RAL-340_100b 1195 chr2R 13925826 13925872 chr2R 13926027 13926073 14 198 8.0 5.5 6.8 1.8 247 chr2R 13925826 intron shot - chr2R 13925950 intron shot - chr2R 13926073 intron shot - chr2R_14_13925001 chr2R_13925001 RAL-340_100b 1196 chr2R 13926293 13926303 chr2R 13926412 13926422 5 119 10.0 8.5 9.2 0.5 129 chr2R 13926293 intron shot - chr2R 13926358 intron shot - chr2R 13926422 intron shot - chr2R_5_13925001 chr2R_13925001 RAL-340_100b 1197 chr2R 13926306 13926331 chr2R 13926410 13926450 5 116 5.0 7.0 6.0 0.7 144 chr2R 13926306 intron shot - chr2R 13926378 intron shot - chr2R 13926450 intron shot - chr2R_5_13925001 chr2R_13925001 RAL-340_100b 1198 chr2R 13934429 13934433 chr2R 13934516 13934540 4 102 0.5 13.5 7.0 0.5 111 chr2R 13934429 intron shot - chr2R 13934484 intron shot - chr2R 13934540 intron shot - chr2R_4_13930001 chr2R_13930001 RAL-340_100b 1199 chr2R 13964513 13964540 chr2R 13964625 13964653 14 112 23.0 8.5 15.8 0.8 140 chr2R 13964513 intron Cp1 + chr2R 13964583 intron Cp1 + chr2R 13964653 intron,5` UTR Cp1 +,CG42806 + chr2R_14_13960001 chr2R_13960001 RAL-340_100b 1200 chr2R 13979640 13979651 chr2R 13979776 13979787 4 134 23.0 6.5 14.8 0.3 147 chr2R 13979640 5` UTR CG6701 - chr2R 13979714 5` UTR CG6701 - chr2R 13979787 5` UTR CG6701 - chr2R_4_13975001 chr2R_13975001 RAL-340_100b 1201 chr2R 13979652 13979695 chr2R 13979773 13979831 29 129 8.5 6.0 7.2 3.5 179 chr2R 13979652 5` UTR CG6701 - chr2R 13979742 5` UTR CG6701 - chr2R 13979831 5` UTR CG6701 - chr2R_29_13975001 chr2R_13975001 RAL-340_100b 1202 chr2R 13993771 13993830 chr2R 13993878 13993891 18 104 5.0 6.5 5.8 2.6 120 chr2R 13993771 intron mam + chr2R 13993831 intron mam + chr2R 13993891 intron mam + chr2R_18_13990001 chr2R_13990001 RAL-340_100b 1203 chr2R 14037237 14037283 chr2R 14037345 14037391 6 108 0.5 5.5 3.0 1.5 154 chr2R 14037237 intron mam + chr2R 14037314 intron mam + chr2R 14037391 intron mam + chr2R_6_14035001 chr2R_14035001 RAL-340_100b 1204 chr2R 14086654 14086658 chr2R 14086716 14086756 5 80 4.5 14.5 9.5 0.5 102 chr2R 14086654 intron Prosap - chr2R 14086705 intron Prosap - chr2R 14086756 intron Prosap - chr2R_5_14085001 chr2R_14085001 RAL-340_100b 1205 chr2R 14093415 14093418 chr2R 14109586 14109593 4 16174 23.5 4.5 14.0 0.3 16178 chr2R 14093415 intron Prosap - chr2R 14101504 intron Prosap - chr2R 14109593 intron Prosap - chr2R_4_14100001 chr2R_14100001 RAL-340_100b 1206 chr2R 14168345 14168395 chr2R 14168459 14168509 14 112 3.0 1.5 2.2 4.4 164 chr2R 14168345 intergenic CG18327 +,CG18324 +,CR44368 - chr2R 14168427 intergenic CG18327 +,CG18324 +,CR44368 - chr2R 14168509 intergenic CG18327 +,CG18324 +,CR44368 - chr2R_14_14165001 chr2R_14165001 RAL-340_100b 1207 chr2R 14283421 14283442 chr2R 14283916 14283931 4 492 5.5 6.0 5.8 0.6 510 chr2R 14283421 intron Ih + chr2R 14283676 intron Ih + chr2R 14283931 intron Ih + chr2R_4_14280001 chr2R_14280001 RAL-340_100b 1208 chr2R 14285020 14285051 chr2R 14285142 14285173 22 121 11.5 14.5 13.0 1.6 153 chr2R 14285020 intron Ih + chr2R 14285096 intron Ih + chr2R 14285173 intron Ih + chr2R_22_14285001 chr2R_14285001 RAL-340_100b 1209 chr2R 14394209 14394220 chr2R 14399023 14399030 Doc 5 4813 17.0 11.0 14.0 0.3 4821 chr2R 14394209 intergenic not near genes chr2R 14396620 intergenic not near genes chr2R 14399030 intergenic not near genes chr2R_5_14395001 chr2R_14395001 RAL-340_100b 1210 chr2R 14403036 14403095 chr2R 14403166 14403226 6 124 5.0 0.0 2.5 1.7 190 chr2R 14403036 intergenic not near genes chr2R 14403131 intergenic not near genes chr2R 14403226 intergenic not near genes chr2R_6_14400001 chr2R_14400001 RAL-340_100b 1211 chr2R 14467281 14467327 chr2R 14476464 14476505 roo 21 9178 5.5 11.5 8.5 2.2 9224 chr2R 14467281 intergenic not near genes chr2R 14471893 intergenic not near genes chr2R 14476505 5` UTR CR44462 + chr2R_21_14470001 chr2R_14470001 RAL-340_100b 1212 chr2R 14497369 14497419 chr2R 14498559 14498609 1360 25 1188 4.5 8.5 6.5 3.3 1240 chr2R 14497369 3` UTR Cpsf160 - chr2R 14497989 intron Cpsf160 - chr2R 14498609 3` UTR Cpsf160 - chr2R_25_14495001 chr2R_14495001 RAL-340_100b 1213 chr2R 14543515 14543571 chr2R 14543635 14543661 20 114 5.5 25.5 15.5 1.2 146 chr2R 14543515 intron ttv + chr2R 14543588 intron ttv + chr2R 14543661 intron ttv + chr2R_20_14540001 chr2R_14540001 RAL-340_100b 1214 chr2R 14174404 14174407 chr2R 14561703 14561712 6 387301 51.0 22.0 36.5 0.2 387308 chr2R 14174404 5` UTR cg + chr2R 14368058 exon CG34443 + chr2R 14561712 intron ttv + chr2R_6_14365001 chr2R_14365001 RAL-340_100b 1215 chr2R 14634258 14634310 chr2R 14634371 14634387 15 106 9.0 5.5 7.2 1.8 129 chr2R 14634258 intergenic not near genes chr2R 14634322 intergenic not near genes chr2R 14634387 intergenic not near genes chr2R_15_14630001 chr2R_14630001 RAL-340_100b 1216 chr2R 14702869 14702920 chr2R 14703153 14703162 13 273 12.5 9.0 10.8 1.1 293 chr2R 14702869 intron mspo - chr2R 14703016 intron mspo - chr2R 14703162 intron mspo - chr2R_13_14700001 chr2R_14700001 RAL-340_100b 1217 chr2R 14722286 14722300 chr2R 14722415 14722429 6 129 15.0 20.0 17.5 0.3 143 chr2R 14722286 intergenic not near genes chr2R 14722358 intergenic not near genes chr2R 14722429 intergenic not near genes chr2R_6_14720001 chr2R_14720001 RAL-340_100b 1218 chr2R 14729949 14729989 chr2R 14730042 14730098 5 106 4.5 5.0 4.8 0.9 149 chr2R 14729949 intergenic not near genes chr2R 14730024 intergenic not near genes chr2R 14730098 intergenic not near genes chr2R_5_14730001 chr2R_14730001 RAL-340_100b 1219 chr2R 14799867 14799894 chr2R 14799968 14799995 13 100 3.0 21.5 12.2 1.0 128 chr2R 14799867 intron kn - chr2R 14799931 intron kn - chr2R 14799995 intron kn - chr2R_13_14795001 chr2R_14795001 RAL-340_100b 1220 chr2R 14803451 14803505 chr2R 14803556 14803610 9 104 0.0 9.5 4.8 1.6 159 chr2R 14803451 intron kn - chr2R 14803530 intron kn - chr2R 14803610 intron kn - chr2R_9_14800001 chr2R_14800001 RAL-340_100b 1221 chr2R 14816084 14816097 chr2R 14816205 14816218 7 117 12.0 3.5 7.8 0.8 134 chr2R 14816084 intergenic not near genes chr2R 14816151 intergenic not near genes chr2R 14816218 intergenic not near genes chr2R_7_14815001 chr2R_14815001 RAL-340_100b 1222 chr2R 14816098 14816137 chr2R 14816204 14816241 19 114 5.0 3.5 4.2 3.7 143 chr2R 14816098 intergenic not near genes chr2R 14816170 intergenic not near genes chr2R 14816241 intergenic not near genes chr2R_19_14815001 chr2R_14815001 RAL-340_100b 1223 chr2R 14826373 14826384 chr2R 14826502 14826513 5 129 8.0 3.0 5.5 0.8 140 chr2R 14826373 intergenic not near genes chr2R 14826443 intergenic not near genes chr2R 14826513 intergenic not near genes chr2R_5_14825001 chr2R_14825001 RAL-340_100b 1224 chr2R 14855018 14855057 chr2R 14855125 14855155 15 109 6.0 0.0 3.0 3.8 137 chr2R 14855018 5` UTR Ciao1 - chr2R 14855086 intergenic Ciao1 -,HPS1 + chr2R 14855155 intergenic Ciao1 -,HPS1 + chr2R_15_14855001 chr2R_14855001 RAL-340_100b 1225 chr2R 14889189 14889217 chr2R 14897822 14897845 Max-element 13 8630 25.5 0.0 12.8 0.9 8656 chr2R 14889189 intergenic Cyp6a8 - chr2R 14893517 intergenic not near genes chr2R 14897845 intergenic not near genes chr2R_13_14890001 chr2R_14890001 RAL-340_100b 1226 chr2R 14911676 14911727 chr2R 14911824 14911862 16 144 7.5 5.0 6.2 2.2 186 chr2R 14911676 intron CG10249 - chr2R 14911769 intron CG10249 - chr2R 14911862 intron CG10249 - chr2R_16_14910001 chr2R_14910001 RAL-340_100b 1227 chr2R 14919130 14919177 chr2R 14919264 14919311 5 134 3.5 1.0 2.2 1.6 181 chr2R 14919130 intron CG10249 - chr2R 14919220 intron CG10249 - chr2R 14919311 intron CG10249 - chr2R_5_14915001 chr2R_14915001 RAL-340_100b 1228 chr2R 14922123 14922163 chr2R 14922222 14922264 14 98 14.5 6.0 10.2 1.2 141 chr2R 14922123 intron CG10249 - chr2R 14922194 intron CG10249 - chr2R 14922264 intron CG10249 - chr2R_14_14920001 chr2R_14920001 RAL-340_100b 1229 chr2R 14934431 14934447 chr2R 14934544 14934560 5 113 6.0 0.0 3.0 1.2 129 chr2R 14934431 intron CG10253 - chr2R 14934496 intron CG10253 - chr2R 14934560 intron CG10253 - chr2R_5_14930001 chr2R_14930001 RAL-340_100b 1230 chr2R 14968059 14968083 chr2R 14968162 14968186 10 102 0.0 9.0 4.5 1.8 127 chr2R 14968059 intron ckn + chr2R 14968122 intron ckn + chr2R 14968186 intron ckn + chr2R_10_14965001 chr2R_14965001 RAL-340_100b 1231 chr2R 14968429 14968461 chr2R 14968526 14968568 15 104 12.0 16.0 14.0 1.0 139 chr2R 14968429 intron ckn + chr2R 14968498 intron ckn + chr2R 14968568 intron ckn + chr2R_15_14965001 chr2R_14965001 RAL-340_100b 1232 chr2R 14968462 14968473 chr2R 14968524 14968533 5 86 5.0 14.5 9.8 0.5 71 chr2R 14968462 intron ckn + chr2R 14968498 intron ckn + chr2R 14968533 intron ckn + chr2R_5_14965001 chr2R_14965001 RAL-340_100b 1233 chr2R 15004707 15004734 chr2R 15005061 15005088 jockey 4 354 13.0 7.5 10.2 0.4 381 chr2R 15004707 intergenic not near genes chr2R 15004898 intergenic not near genes chr2R 15005088 intergenic not near genes chr2R_4_15000001 chr2R_15000001 RAL-340_100b 1234 chr2R 15004744 15004750 chr2R 15005082 15005103 jockey 6 351 7.0 9.5 8.2 0.7 359 chr2R 15004744 intergenic not near genes chr2R 15004924 intergenic not near genes chr2R 15005103 intergenic not near genes chr2R_6_15000001 chr2R_15000001 RAL-340_100b 1235 chr2R 15015432 15015490 chr2R 15022881 15022935 mdg1 12 7442 7.5 5.5 6.5 1.6 7503 chr2R 15015432 intron hbs + chr2R 15019184 intron hbs + chr2R 15022935 intron hbs + chr2R_12_15015001 chr2R_15015001 RAL-340_100b 1236 chr2R 15094859 15094891 chr2R 15094961 15094993 7 102 9.0 4.0 6.5 0.9 134 chr2R 15094859 intergenic not near genes chr2R 15094926 intergenic not near genes chr2R 15094993 intergenic not near genes chr2R_7_15090001 chr2R_15090001 RAL-340_100b 1237 chr2R 15105181 15105210 chr2R 15105288 15105321 18 112 8.5 22.5 15.5 1.1 140 chr2R 15105181 intergenic not near genes chr2R 15105251 intergenic not near genes chr2R 15105321 intergenic not near genes chr2R_18_15105001 chr2R_15105001 RAL-340_100b 1238 chr2R 15119297 15119319 chr2R 15127803 15127825 Tirant 10 8504 14.5 22.0 18.2 0.5 8528 chr2R 15119297 intron chn + chr2R 15123561 intron chn + chr2R 15127825 intron chn + chr2R_10_15120001 chr2R_15120001 RAL-340_100b 1239 chr2R 15119320 15119345 chr2R 15127800 15127851 Tirant 20 8501 5.5 19.0 12.2 1.5 8531 chr2R 15119320 intron chn + chr2R 15123586 intron chn + chr2R 15127851 intron chn + chr2R_20_15120001 chr2R_15120001 RAL-340_100b 1240 chr2R 15119346 15119349 chr2R 15127799 15127844 Tirant 6 8492 5.5 17.0 11.2 0.5 8498 chr2R 15119346 intron chn + chr2R 15123595 intron chn + chr2R 15127844 intron chn + chr2R_6_15120001 chr2R_15120001 RAL-340_100b 1241 chr2R 15133462 15133506 chr2R 15133566 15133610 13 100 8.5 9.5 9.0 1.3 148 chr2R 15133462 intron chn + chr2R 15133536 intron chn + chr2R 15133610 intron chn + chr2R_13_15130001 chr2R_15130001 RAL-340_100b 1242 chr2R 15134300 15134318 chr2R 15134372 15134420 12 95 0.5 7.0 3.8 2.5 120 chr2R 15134300 intron chn + chr2R 15134360 intron chn + chr2R 15134420 intron chn + chr2R_12_15130001 chr2R_15130001 RAL-340_100b 1243 chr2R 15137944 15137959 chr2R 15138049 15138064 8 104 15.0 7.0 11.0 0.7 120 chr2R 15137944 intron chn + chr2R 15138004 intron chn + chr2R 15138064 intron chn + chr2R_8_15135001 chr2R_15135001 RAL-340_100b 1244 chr2R 15137963 15138004 chr2R 15138048 15138090 28 102 8.0 7.0 7.5 3.3 127 chr2R 15137963 intron chn + chr2R 15138026 intron chn + chr2R 15138090 intron chn + chr2R_28_15135001 chr2R_15135001 RAL-340_100b 1245 chr2R 15230354 15230374 chr2R 15230671 15230676 8 305 50.5 2.0 26.2 0.3 322 chr2R 15230354 intron,5` UTR Fs -,CR44370 + chr2R 15230515 intron,5` UTR Fs -,CR44370 + chr2R 15230676 intron,5` UTR Fs -,CR44370 + chr2R_8_15230001 chr2R_15230001 RAL-340_100b 1246 chr2R 15293813 15293840 chr2R 15293909 15293920 9 97 8.5 3.5 6.0 1.3 107 chr2R 15293813 intron Trpm - chr2R 15293866 intron Trpm - chr2R 15293920 intron Trpm - chr2R_9_15290001 chr2R_15290001 RAL-340_100b 1247 chr2R 15293857 15293860 chr2R 15293903 15293922 4 54 4.0 2.0 3.0 1.0 65 chr2R 15293857 intron Trpm - chr2R 15293890 intron Trpm - chr2R 15293922 intron Trpm - chr2R_4_15290001 chr2R_15290001 RAL-340_100b 1248 chr2R 15374793 15375070 chr2R 15374901 15375194 10 127 11.0 9.0 10.0 0.9 401 chr2R 15374793 intergenic not near genes chr2R 15374994 intergenic not near genes chr2R 15375194 intergenic not near genes chr2R_10_15370001 chr2R_15370001 RAL-340_100b 1249 chr2R 15375342 15375362 chr2R 15376184 15376204 8 840 2.5 15.5 9.0 0.8 862 chr2R 15375342 intergenic not near genes chr2R 15375773 intergenic not near genes chr2R 15376204 intergenic dup - chr2R_8_15375001 chr2R_15375001 RAL-340_100b 1250 chr2R 15446794 15446808 chr2R 15447145 15447153 6 349 19.0 4.5 11.8 0.5 359 chr2R 15446794 intron CG43729 + chr2R 15446974 intron CG43729 + chr2R 15447153 intron CG43729 + chr2R_6_15445001 chr2R_15445001 RAL-340_100b 1251 chr2R 15472025 15472062 chr2R 15472134 15472169 11 108 0.5 18.0 9.2 1.1 144 chr2R 15472025 intergenic CG43729 +,CG8180 - chr2R 15472097 intergenic CG8180 -,CG43729 + chr2R 15472169 intergenic CG8180 -,CG43729 + chr2R_11_15470001 chr2R_15470001 RAL-340_100b 1252 chr2R 15551237 15551263 chr2R 15551331 15551335 13 104 7.5 2.5 5.0 2.2 98 chr2R 15551237 intergenic not near genes chr2R 15551286 intergenic not near genes chr2R 15551335 intergenic not near genes chr2R_13_15550001 chr2R_15550001 RAL-340_100b 1253 chr2R 15606106 15606129 chr2R 15606208 15606231 10 102 3.5 7.0 5.2 1.6 125 chr2R 15606106 intergenic not near genes chr2R 15606168 intergenic not near genes chr2R 15606231 intergenic not near genes chr2R_10_15605001 chr2R_15605001 RAL-340_100b 1254 chr2R 15615708 15615715 chr2R 15615811 15615818 6 103 1.0 35.0 18.0 0.3 110 chr2R 15615708 intron CG42524 + chr2R 15615763 intron CG42524 + chr2R 15615818 intron CG42524 + chr2R_6_15615001 chr2R_15615001 RAL-340_100b 1255 chr2R 15679081 15679128 chr2R 15679190 15679237 32 106 5.5 9.5 7.5 3.8 156 chr2R 15679081 intergenic CG8207 -,Vha14-1 - chr2R 15679159 intergenic CG8207 -,Vha14-1 - chr2R 15679237 intergenic Vha14-1 -,CG8207 - chr2R_32_15675001 chr2R_15675001 RAL-340_100b 1256 chr2R 15752853 15752899 chr2R 15752948 15753003 5 102 7.5 11.5 9.5 0.5 150 chr2R 15752853 intron CG30089 + chr2R 15752928 intron CG30089 + chr2R 15753003 intron CG30089 + chr2R_5_15750001 chr2R_15750001 RAL-340_100b 1257 chr2R 15794868 15794883 chr2R 15794982 15794998 8 115 0.0 0.0 0.0 8.0 130 chr2R 15794868 intron,5` UTR Zasp52 -,tun + chr2R 15794933 intron,5` UTR Zasp52 -,tun + chr2R 15794998 intron,intron Zasp52 -,tun + chr2R_8_15790001 chr2R_15790001 RAL-340_100b 1258 chr2R 15833502 15833546 chr2R 15833614 15833644 18 103 8.5 9.5 9.0 1.8 142 chr2R 15833502 intron,intron tun +,Poxn - chr2R 15833573 intron,intron tun +,Poxn - chr2R 15833644 intron,intron tun +,Poxn - chr2R_18_15830001 chr2R_15830001 RAL-340_100b 1259 chr2R 15898856 15898909 chr2R 15898979 15899032 21 121 6.0 9.5 7.8 2.4 176 chr2R 15898856 intron sli - chr2R 15898944 intron sli - chr2R 15899032 intron sli - chr2R_21_15895001 chr2R_15895001 RAL-340_100b 1260 chr2R 16037204 16037224 chr2R 16037305 16037315 7 100 29.0 30.5 29.8 0.2 111 chr2R 16037204 intron SP2353 + chr2R 16037260 intron SP2353 + chr2R 16037315 intron SP2353 + chr2R_7_16035001 chr2R_16035001 RAL-340_100b 1261 chr2R 16037227 16037228 chr2R 16037309 16037320 6 91 26.5 33.0 29.8 0.2 93 chr2R 16037227 intron SP2353 + chr2R 16037274 intron SP2353 + chr2R 16037320 intron SP2353 + chr2R_6_16035001 chr2R_16035001 RAL-340_100b 1262 chr2R 16050573 16050618 chr2R 16050681 16050726 12 102 4.0 10.5 7.2 1.5 153 chr2R 16050573 intron CG8405 + chr2R 16050650 intron CG8405 + chr2R 16050726 intron CG8405 + chr2R_12_16050001 chr2R_16050001 RAL-340_100b 1263 chr2R 16054925 16054953 chr2R 16055033 16055059 9 107 21.0 22.0 21.5 0.4 134 chr2R 16054925 intron CG8405 + chr2R 16054992 intron CG8405 + chr2R 16055059 intron CG8405 + chr2R_9_16050001 chr2R_16050001 RAL-340_100b 1264 chr2R 16054958 16054961 chr2R 16055056 16055069 4 102 16.5 30.0 23.2 0.2 111 chr2R 16054958 intron CG8405 + chr2R 16055014 intron CG8405 + chr2R 16055069 intron CG8405 + chr2R_4_16055001 chr2R_16055001 RAL-340_100b 1265 chr2R 16061707 16061716 chr2R 16064365 16064371 Burdock 7 2658 31.5 11.0 21.2 0.3 2664 chr2R 16061707 intergenic not near genes chr2R 16063039 intergenic not near genes chr2R 16064371 intergenic not near genes chr2R_7_16060001 chr2R_16060001 RAL-340_100b 1266 chr2R 16243569 16243627 chr2R 16243705 16243728 16 129 9.5 9.0 9.2 1.6 159 chr2R 16243569 3` UTR CngA - chr2R 16243648 3` UTR CngA - chr2R 16243728 3` UTR CngA - chr2R_16_16240001 chr2R_16240001 RAL-340_100b 1267 chr2R 16245410 16245430 chr2R 16245529 16245548 9 119 1.5 7.5 4.5 1.6 138 chr2R 16245410 intron CngA - chr2R 16245479 intron CngA - chr2R 16245548 intron CngA - chr2R_9_16245001 chr2R_16245001 RAL-340_100b 1268 chr2R 16352841 16352867 chr2R 16352949 16352975 13 107 11.5 6.5 9.0 1.3 134 chr2R 16352841 intergenic not near genes chr2R 16352908 intergenic not near genes chr2R 16352975 intergenic not near genes chr2R_13_16350001 chr2R_16350001 RAL-340_100b 1269 chr2R 16544844 16544870 chr2R 16544952 16544980 12 110 1.0 2.5 1.8 4.3 136 chr2R 16544844 intergenic not near genes chr2R 16544912 intergenic not near genes chr2R 16544980 intergenic not near genes chr2R_12_16540001 chr2R_16540001 RAL-340_100b 1270 chr2R 16571849 16571906 chr2R 16571969 16571985 18 109 6.5 8.5 7.5 2.1 136 chr2R 16571849 intergenic CG4927 + chr2R 16571917 intergenic CG4927 + chr2R 16571985 intergenic CG4927 + chr2R_18_16570001 chr2R_16570001 RAL-340_100b 1271 chr2R 16601494 16601548 chr2R 16601630 16601684 25 132 6.0 8.0 7.0 3.1 190 chr2R 16601494 intron CG8303 - chr2R 16601589 intron CG8303 - chr2R 16601684 intron CG8303 - chr2R_25_16600001 chr2R_16600001 RAL-340_100b 1272 chr2R 16661313 16661335 chr2R 16661378 16661438 9 96 3.0 6.5 4.8 1.6 125 chr2R 16661313 intron Picot - chr2R 16661376 intron Picot - chr2R 16661438 intron Picot - chr2R_9_16660001 chr2R_16660001 RAL-340_100b 1273 chr2R 16689132 16689175 chr2R 16689486 16689529 18 342 6.0 8.5 7.2 2.2 397 chr2R 16689132 intron CG30463 - chr2R 16689330 intron CG30463 - chr2R 16689529 intron CG30463 - chr2R_18_16685001 chr2R_16685001 RAL-340_100b 1274 chr2R 16732850 16732881 chr2R 16733044 16733076 11 195 6.5 8.5 7.5 1.3 226 chr2R 16732850 5` UTR CG30463 - chr2R 16732963 intergenic CG30463 - chr2R 16733076 intergenic CG30463 - chr2R_11_16730001 chr2R_16730001 RAL-340_100b 1275 chr2R 16737128 16737163 chr2R 16737238 16737288 20 119 9.5 6.5 8.0 2.2 160 chr2R 16737128 3` UTR CG43104 - chr2R 16737208 3` UTR CG43104 - chr2R 16737288 exon CG43104 - chr2R_20_16735001 chr2R_16735001 RAL-340_100b 1276 chr2R 16766679 16766686 chr2R 16766787 16766794 8 108 6.0 14.5 10.2 0.7 115 chr2R 16766679 intron unc-104 - chr2R 16766736 intron unc-104 - chr2R 16766794 intron unc-104 - chr2R_8_16765001 chr2R_16765001 RAL-340_100b 1277 chr2R 16775633 16775641 chr2R 16775925 16775929 5 291 11.0 9.5 10.2 0.4 296 chr2R 16775633 3` UTR Arp53D + chr2R 16775781 intergenic Arp53D + chr2R 16775929 intergenic Arp53D + chr2R_5_16775001 chr2R_16775001 RAL-340_100b 1278 chr2R 16775642 16775675 chr2R 16775923 16775967 20 289 3.0 9.5 6.2 2.8 325 chr2R 16775642 3` UTR Arp53D + chr2R 16775804 intergenic Arp53D + chr2R 16775967 intergenic Arp53D + chr2R_20_16775001 chr2R_16775001 RAL-340_100b 1279 chr2R 16781154 16781160 chr2R 16781268 16781278 5 117 8.5 18.0 13.2 0.4 124 chr2R 16781154 exon resilin + chr2R 16781216 exon resilin + chr2R 16781278 exon resilin + chr2R_5_16780001 chr2R_16780001 RAL-340_100b 1280 chr2R 16780964 16781056 chr2R 16781180 16781298 4 146 28.0 8.5 18.2 0.2 334 chr2R 16780964 exon resilin + chr2R 16781131 exon resilin + chr2R 16781298 exon resilin + chr2R_4_16780001 chr2R_16780001 RAL-340_100b 1281 chr2R 16834440 16834477 chr2R 16835055 16835103 24 620 7.0 20.5 13.8 1.6 663 chr2R 16834440 5` UTR CR43650 + chr2R 16834772 5` UTR CR43650 + chr2R 16835103 5` UTR CR43650 + chr2R_24_16830001 chr2R_16830001 RAL-340_100b 1282 chr2R 16880009 16880059 chr2R 16880111 16880161 10 100 5.5 2.0 3.8 2.1 152 chr2R 16880009 intron CG8910 - chr2R 16880085 intron CG8910 - chr2R 16880161 intron CG8910 - chr2R_10_16880001 chr2R_16880001 RAL-340_100b 1283 chr2R 16920688 16920703 chr2R 16920758 16920799 18 96 0.5 7.0 3.8 3.8 111 chr2R 16920688 intergenic not near genes chr2R 16920744 intergenic not near genes chr2R 16920799 intergenic not near genes chr2R_18_16920001 chr2R_16920001 RAL-340_100b 1284 chr2R 16924657 16924689 chr2R 16924773 16924806 10 111 9.0 16.0 12.5 0.7 149 chr2R 16924657 5` UTR Pkc53E + chr2R 16924732 5` UTR Pkc53E + chr2R 16924806 intron Pkc53E + chr2R_10_16920001 chr2R_16920001 RAL-340_100b 1285 chr2R 16924691 16924703 chr2R 16924768 16924810 7 103 7.0 15.0 11.0 0.6 119 chr2R 16924691 5` UTR Pkc53E + chr2R 16924750 5` UTR Pkc53E + chr2R 16924810 intron Pkc53E + chr2R_7_16920001 chr2R_16920001 RAL-340_100b 1286 chr2R 16930602 16930628 chr2R 16930705 16930731 9 102 1.0 4.0 2.5 2.6 129 chr2R 16930602 intron Pkc53E + chr2R 16930666 intron Pkc53E + chr2R 16930731 intron Pkc53E + chr2R_9_16930001 chr2R_16930001 RAL-340_100b 1287 chr2R 16517603 16517666 chr2R 17041485 17041487 5 523836 23.0 29.5 26.2 0.2 523884 chr2R 16517603 intron Sema-2a + chr2R 16779545 intergenic resilin + chr2R 17041487 exon,3` UTR RhoGEF2 +,CR45145 - chr2R_5_16775001 chr2R_16775001 RAL-340_100b 1288 chr2R 17147220 17147234 chr2R 17152276 17152290 jockey 5 5056 23.5 11.5 17.5 0.3 5070 chr2R 17147220 intergenic not near genes chr2R 17149755 intergenic not near genes chr2R 17152290 intergenic not near genes chr2R_5_17145001 chr2R_17145001 RAL-340_100b 1289 chr2R 17147236 17147267 chr2R 17152274 17152317 jockey 16 5054 9.0 11.0 10.0 1.5 5081 chr2R 17147236 intergenic not near genes chr2R 17149776 intergenic not near genes chr2R 17152317 intergenic not near genes chr2R_16_17145001 chr2R_17145001 RAL-340_100b 1290 chr2R 17161329 17161364 chr2R 17161561 17161573 8 224 11.0 0.0 5.5 1.2 244 chr2R 17161329 intergenic CG30457 - chr2R 17161451 intergenic not near genes chr2R 17161573 intergenic not near genes chr2R_8_17160001 chr2R_17160001 RAL-340_100b 1291 chr2R 17211197 17211237 chr2R 17211304 17211346 27 114 7.0 2.5 4.8 4.7 149 chr2R 17211197 intergenic not near genes chr2R 17211272 intergenic not near genes chr2R 17211346 intergenic not near genes chr2R_27_17210001 chr2R_17210001 RAL-340_100b 1292 chr2R 17236483 17236509 chr2R 17241712 17241732 copia 30 5228 19.0 9.0 14.0 2.0 5249 chr2R 17236483 intron mbl + chr2R 17239108 intron mbl + chr2R 17241732 intron mbl + chr2R_30_17235001 chr2R_17235001 RAL-340_100b 1293 chr2R 17236513 17236525 chr2R 17241722 17241754 copia 11 5222 15.0 13.0 14.0 0.7 5241 chr2R 17236513 intron mbl + chr2R 17239134 intron mbl + chr2R 17241754 intron mbl + chr2R_11_17235001 chr2R_17235001 RAL-340_100b 1294 chr2R 17236526 17236534 chr2R 17241717 17241763 copia 9 5218 14.5 11.0 12.8 0.7 5237 chr2R 17236526 intron mbl + chr2R 17239144 intron mbl + chr2R 17241763 intron mbl + chr2R_9_17235001 chr2R_17235001 RAL-340_100b 1295 chr2R 17280047 17280095 chr2R 17280152 17280202 24 98 8.5 6.0 7.2 2.9 155 chr2R 17280047 intron mbl + chr2R 17280124 intron mbl + chr2R 17280202 intron mbl + chr2R_24_17280001 chr2R_17280001 RAL-340_100b 1296 chr2R 17351400 17351421 chr2R 17351493 17351528 12 105 6.5 25.0 15.8 0.7 128 chr2R 17351400 intron mbl + chr2R 17351464 intron mbl + chr2R 17351528 intron mbl + chr2R_12_17350001 chr2R_17350001 RAL-340_100b 1297 chr2R 17397790 17397826 chr2R 17397901 17397942 21 115 5.0 5.0 5.0 3.5 152 chr2R 17397790 intron Sip1 + chr2R 17397866 intron Sip1 + chr2R 17397942 intron Sip1 + chr2R_21_17395001 chr2R_17395001 RAL-340_100b 1298 chr2R 17458984 17459016 chr2R 17459094 17459126 14 109 15.5 7.0 11.2 1.1 142 chr2R 17458984 intron CG14478 + chr2R 17459055 intron CG14478 + chr2R 17459126 intron CG14478 + chr2R_14_17455001 chr2R_17455001 RAL-340_100b 1299 chr2R 17459025 17459034 chr2R 17459090 17459103 8 83 7.0 5.5 6.2 1.1 78 chr2R 17459025 intron CG14478 + chr2R 17459064 intron CG14478 + chr2R 17459103 intron CG14478 + chr2R_8_17455001 chr2R_17455001 RAL-340_100b 1300 chr2R 17485897 17485950 chr2R 17490692 17490737 F-element 14 4792 9.5 5.0 7.2 1.7 4840 chr2R 17485897 5` UTR,intron CG43110 -,NT5E-2 + chr2R 17488317 intron NT5E-2 + chr2R 17490737 intron NT5E-2 + chr2R_14_17485001 chr2R_17485001 RAL-340_100b 1301 chr2R 17564658 17564674 chr2R 17564760 17564776 6 101 8.5 1.5 5.0 1.0 118 chr2R 17564658 5` UTR CG14480 + chr2R 17564717 intron CG14480 + chr2R 17564776 5` UTR CG14480 + chr2R_6_17560001 chr2R_17560001 RAL-340_100b 1302 chr2R 17626844 17626847 chr2R 17626940 17626950 4 101 17.5 7.0 12.2 0.3 106 chr2R 17626844 intron CG10936 - chr2R 17626897 intron CG10936 - chr2R 17626950 intron CG10936 - chr2R_4_17625001 chr2R_17625001 RAL-340_100b 1303 chr2R 17626850 17626875 chr2R 17626937 17626978 13 100 7.0 6.5 6.8 1.7 128 chr2R 17626850 intron CG10936 - chr2R 17626914 intron CG10936 - chr2R 17626978 intron CG10936 - chr2R_13_17625001 chr2R_17625001 RAL-340_100b 1304 chr2R 17679578 17679600 chr2R 17679730 17679744 10 151 1.5 4.5 3.0 2.5 166 chr2R 17679578 intron Sema-1b - chr2R 17679661 intron Sema-1b - chr2R 17679744 intron Sema-1b - chr2R_10_17675001 chr2R_17675001 RAL-340_100b 1305 chr2R 17708373 17708405 chr2R 17708479 17708511 14 105 11.5 5.0 8.2 1.5 138 chr2R 17708373 intron CG6424 - chr2R 17708442 intron CG6424 - chr2R 17708511 intron CG6424 - chr2R_14_17705001 chr2R_17705001 RAL-340_100b 1306 chr2R 17708407 17708417 chr2R 17708476 17708523 4 97 8.0 5.0 6.5 0.5 116 chr2R 17708407 intron CG6424 - chr2R 17708465 intron CG6424 - chr2R 17708523 intron CG6424 - chr2R_4_17705001 chr2R_17705001 RAL-340_100b 1307 chr2R 17709959 17710011 chr2R 17710075 17710116 23 112 7.5 0.0 3.8 4.8 157 chr2R 17709959 intron CG6424 - chr2R 17710038 intron CG6424 - chr2R 17710116 intron CG6424 - chr2R_23_17710001 chr2R_17710001 RAL-340_100b 1308 chr2R 17710070 17710117 chr2R 17710173 17710220 10 103 1.0 14.5 7.8 1.1 150 chr2R 17710070 intron CG6424 - chr2R 17710145 intron CG6424 - chr2R 17710220 intron CG6424 - chr2R_10_17710001 chr2R_17710001 RAL-340_100b 1309 chr2R 17756690 17756731 chr2R 17756793 17756794 4 93 2.0 1.5 1.8 1.4 104 chr2R 17756690 intergenic CG6385 - chr2R 17756742 intergenic CG6385 - chr2R 17756794 intergenic CG6385 - chr2R_4_17755001 chr2R_17755001 RAL-340_100b 1310 chr2R 17782345 17782391 chr2R 17783573 17783619 pogo 6 1228 6.5 7.0 6.8 0.8 1274 chr2R 17782345 intergenic CG33981 -,fab1 - chr2R 17782982 intergenic not near genes chr2R 17783619 intergenic mir-31a - chr2R_6_17780001 chr2R_17780001 RAL-340_100b 1311 chr2R 17784001 17784055 chr2R 17784267 17784320 pogo 20 261 8.0 13.0 10.5 1.7 319 chr2R 17784001 intergenic mir-31a - chr2R 17784160 intergenic mir-31a - chr2R 17784320 intergenic mir-31a - chr2R_20_17780001 chr2R_17780001 RAL-340_100b 1312 chr2R 17835007 17835063 chr2R 17835125 17835137 32 107 14.0 7.5 10.8 2.7 130 chr2R 17835007 intron grh + chr2R 17835072 intron grh + chr2R 17835137 intron grh + chr2R_32_17835001 chr2R_17835001 RAL-340_100b 1313 chr2R 17860390 17860433 chr2R 17860616 17860663 11 222 0.5 7.0 3.8 2.3 273 chr2R 17860390 3` UTR olf186-F + chr2R 17860526 3` UTR olf186-F + chr2R 17860663 intergenic olf186-F +,CG14490 + chr2R_11_17860001 chr2R_17860001 RAL-340_100b 1314 chr2R 17876318 17876327 chr2R 17876573 17876583 4 256 17.5 13.0 15.2 0.2 265 chr2R 17876318 intron Elk + chr2R 17876450 intron Elk + chr2R 17876583 intron Elk + chr2R_4_17875001 chr2R_17875001 RAL-340_100b 1315 chr2R 17876328 17876372 chr2R 17876571 17876617 24 249 5.0 13.0 9.0 2.4 289 chr2R 17876328 intron Elk + chr2R 17876472 intron Elk + chr2R 17876617 intron Elk + chr2R_24_17875001 chr2R_17875001 RAL-340_100b 1316 chr2R 17918148 17918166 chr2R 17918243 17918268 5 98 6.5 1.5 4.0 1.0 120 chr2R 17918148 intron Elk + chr2R 17918208 intron Elk + chr2R 17918268 intron Elk + chr2R_5_17915001 chr2R_17915001 RAL-340_100b 1317 chr2R 17918168 17918179 chr2R 17918237 17918245 5 78 5.0 2.0 3.5 1.1 77 chr2R 17918168 intron Elk + chr2R 17918206 intron Elk + chr2R 17918245 intron Elk + chr2R_5_17915001 chr2R_17915001 RAL-340_100b 1318 chr2R 17922653 17922696 chr2R 17922805 17922848 28 150 11.0 10.0 10.5 2.4 195 chr2R 17922653 intron Elk + chr2R 17922750 intron Elk + chr2R 17922848 intron Elk + chr2R_28_17920001 chr2R_17920001 RAL-340_100b 1319 chr2R 17982905 17982949 chr2R 17983013 17983058 16 106 6.0 3.5 4.8 2.8 153 chr2R 17982905 intron dpr13 - chr2R 17982982 intron dpr13 - chr2R 17983058 intron dpr13 - chr2R_16_17980001 chr2R_17980001 RAL-340_100b 1320 chr2R 17990744 17990797 chr2R 17990918 17990971 23 173 5.0 3.5 4.2 4.4 227 chr2R 17990744 intron dpr13 - chr2R 17990858 intron dpr13 - chr2R 17990971 intron dpr13 - chr2R_23_17990001 chr2R_17990001 RAL-340_100b 1321 chr2R 18074586 18074620 chr2R 18074687 18074688 6 96 3.5 4.0 3.8 1.2 102 chr2R 18074586 intron CG34386 + chr2R 18074637 intron CG34386 + chr2R 18074688 intron CG34386 + chr2R_6_18070001 chr2R_18070001 RAL-340_100b 1322 chr2R 18111662 18111713 chr2R 18115555 18115606 F-element 16 3886 10.5 11.0 10.8 1.4 3944 chr2R 18111662 intergenic not near genes chr2R 18113634 intergenic not near genes chr2R 18115606 intergenic not near genes chr2R_16_18110001 chr2R_18110001 RAL-340_100b 1323 chr2R 18141852 18141862 chr2R 18141965 18141975 7 113 13.0 10.0 11.5 0.6 123 chr2R 18141852 intron pAbp + chr2R 18141914 intron pAbp + chr2R 18141975 intron pAbp + chr2R_7_18140001 chr2R_18140001 RAL-340_100b 1324 chr2R 18224569 18224617 chr2R 18224675 18224708 12 99 4.5 13.0 8.8 1.2 139 chr2R 18224569 intergenic not near genes chr2R 18224638 intergenic not near genes chr2R 18224708 intergenic not near genes chr2R_12_18220001 chr2R_18220001 RAL-340_100b 1325 chr2R 18289414 18289462 chr2R 18289531 18289572 11 117 1.0 7.0 4.0 2.2 158 chr2R 18289414 intron,intron sbb -,CG14502 + chr2R 18289493 intron,intron sbb -,CG14502 + chr2R 18289572 exon,intron sbb -,CG14502 + chr2R_11_18285001 chr2R_18285001 RAL-340_100b 1326 chr2R 18308266 18308313 chr2R 18308391 18308444 26 126 7.5 5.0 6.2 3.6 178 chr2R 18308266 intron sbb - chr2R 18308355 intron sbb - chr2R 18308444 intron sbb - chr2R_26_18305001 chr2R_18305001 RAL-340_100b 1327 chr2R 18358375 18358416 chr2R 18372612 18372653 roo 19 14229 10.0 13.5 11.8 1.5 14278 chr2R 18358375 intergenic not near genes chr2R 18365514 intergenic not near genes chr2R 18372653 intergenic not near genes chr2R_19_18365001 chr2R_18365001 RAL-340_100b 1328 chr2R 18390850 18390901 chr2R 18390962 18391013 14 112 3.5 6.5 5.0 2.3 163 chr2R 18390850 intergenic CG15068 - chr2R 18390932 intergenic CG15068 - chr2R 18391013 intergenic CG15068 - chr2R_14_18390001 chr2R_18390001 RAL-340_100b 1329 chr2R 18402486 18402532 chr2R 18402589 18402645 14 110 2.0 9.0 5.5 2.2 159 chr2R 18402486 intergenic not near genes chr2R 18402566 intergenic not near genes chr2R 18402645 intergenic not near genes chr2R_14_18400001 chr2R_18400001 RAL-340_100b 1330 chr2R 18405727 18405779 chr2R 18405870 18405922 8 142 4.5 4.0 4.2 1.5 195 chr2R 18405727 intergenic GstE6 +,GstE5 + chr2R 18405824 intergenic GstE6 +,GstE5 + chr2R 18405922 intergenic GstE6 + chr2R_8_18405001 chr2R_18405001 RAL-340_100b 1331 chr2R 18439015 18439069 chr2R 18439132 18439186 21 110 3.5 9.5 6.5 2.8 171 chr2R 18439015 intron CG30118 - chr2R 18439100 intron CG30118 - chr2R 18439186 intron CG30118 - chr2R_21_18435001 chr2R_18435001 RAL-340_100b 1332 chr2R 18463666 18463680 chr2R 18463770 18463784 5 104 13.5 5.5 9.5 0.5 118 chr2R 18463666 intron CG30116 - chr2R 18463725 intron CG30116 - chr2R 18463784 intron CG30116 - chr2R_5_18460001 chr2R_18460001 RAL-340_100b 1333 chr2R 18480439 18480483 chr2R 18480571 18480615 6 127 0.0 0.0 0.0 6.0 176 chr2R 18480439 intron CG30116 - chr2R 18480527 intron CG30116 - chr2R 18480615 intron CG30116 - chr2R_6_18480001 chr2R_18480001 RAL-340_100b 1334 chr2R 18486826 18486862 chr2R 18487109 18487149 20 280 28.0 8.5 18.2 1.0 323 chr2R 18486826 intron CG30116 - chr2R 18486988 intron CG30116 - chr2R 18487149 intron CG30116 - chr2R_20_18485001 chr2R_18485001 RAL-340_100b 1335 chr2R 18486863 18486879 chr2R 18487108 18487166 7 279 14.0 8.5 11.2 0.6 303 chr2R 18486863 intron CG30116 - chr2R 18487014 intron CG30116 - chr2R 18487166 intron CG30116 - chr2R_7_18485001 chr2R_18485001 RAL-340_100b 1336 chr2R 18487820 18487848 chr2R 18495290 18495343 blood 12 7477 1.5 6.5 4.0 2.4 7523 chr2R 18487820 intron CG30116 - chr2R 18491582 intron CG30116 - chr2R 18495343 intron CG30116 - chr2R_12_18490001 chr2R_18490001 RAL-340_100b 1337 chr2R 18575774 18575831 chr2R 18581983 18582018 3S18 26 6203 3.0 9.5 6.2 3.6 6244 chr2R 18575774 intron GEFmeso - chr2R 18578896 intron GEFmeso - chr2R 18582018 intron GEFmeso - chr2R_26_18575001 chr2R_18575001 RAL-340_100b 1338 chr2R 18590843 18590868 chr2R 18600020 18600045 roo 12 9175 15.5 10.0 12.8 0.9 9202 chr2R 18590843 intron GEFmeso - chr2R 18595444 intron GEFmeso - chr2R 18600045 intron GEFmeso - chr2R_12_18595001 chr2R_18595001 RAL-340_100b 1339 chr2R 18590872 18590879 chr2R 18600019 18600056 roo 6 9172 13.5 10.0 11.8 0.5 9184 chr2R 18590872 intron GEFmeso - chr2R 18595464 intron GEFmeso - chr2R 18600056 intron GEFmeso - chr2R_6_18595001 chr2R_18595001 RAL-340_100b 1340 chr2R 18590881 18590899 chr2R 18600018 18600037 roo 9 9159 7.0 9.5 8.2 1.0 9156 chr2R 18590881 intron GEFmeso - chr2R 18595459 intron GEFmeso - chr2R 18600037 intron GEFmeso - chr2R_9_18595001 chr2R_18595001 RAL-340_100b 1341 chr2R 16383109 16383111 chr2R 18603045 18603045 11 2219935 1.5 27.0 14.2 0.7 2219936 chr2R 16383109 3` UTR CG43187 + chr2R 17493077 3` UTR NT5E-2 + chr2R 18603045 intron GEFmeso - chr2R_11_17490001 chr2R_17490001 RAL-340_100b 1342 chr2R 18608606 18608655 chr2R 18608707 18608756 19 99 9.5 7.5 8.5 2.0 150 chr2R 18608606 intron GEFmeso - chr2R 18608681 intron GEFmeso - chr2R 18608756 intron GEFmeso - chr2R_19_18605001 chr2R_18605001 RAL-340_100b 1343 chr2R 18629267 18629306 chr2R 18629401 18629448 18 137 15.0 9.0 12.0 1.4 181 chr2R 18629267 3` UTR Eip55E + chr2R 18629358 3` UTR Eip55E + chr2R 18629448 intergenic Eip55E +,CG5482 - chr2R_18_18625001 chr2R_18625001 RAL-340_100b 1344 chr2R 18646416 18646434 chr2R 18646586 18646604 6 169 7.0 14.5 10.8 0.5 188 chr2R 18646416 intron SP2637 - chr2R 18646510 intron SP2637 - chr2R 18646604 intron SP2637 - chr2R_6_18645001 chr2R_18645001 RAL-340_100b 1345 chr2R 18736764 18736780 chr2R 18736914 18736923 6 149 22.0 7.5 14.8 0.4 159 chr2R 18736764 intron Hs3st-A + chr2R 18736844 intron Hs3st-A + chr2R 18736923 intron Hs3st-A + chr2R_6_18735001 chr2R_18735001 RAL-340_100b 1346 chr2R 18769628 18769738 chr2R 18769914 18769970 8 259 0.5 6.0 3.2 1.9 342 chr2R 18769628 intron Mctp + chr2R 18769799 intron Mctp + chr2R 18769970 intron Mctp + chr2R_8_18765001 chr2R_18765001 RAL-340_100b 1347 chr2R 18778591 18778607 chr2R 18778714 18778730 7 123 7.0 0.5 3.8 1.5 139 chr2R 18778591 intergenic not near genes chr2R 18778660 intergenic not near genes chr2R 18778730 intergenic not near genes chr2R_7_18775001 chr2R_18775001 RAL-340_100b 1348 chr2R 18808062 18808076 chr2R 18808160 18808183 4 106 0.0 0.0 0.0 4.0 121 chr2R 18808062 intergenic CG15096 - chr2R 18808122 intergenic CG15096 - chr2R 18808183 intergenic CG15096 - chr2R_4_18805001 chr2R_18805001 RAL-340_100b 1349 chr2R 18819017 18819061 chr2R 18819120 18819163 12 95 3.5 1.5 2.5 3.4 146 chr2R 18819017 intergenic Phb2 + chr2R 18819090 intergenic Phb2 + chr2R 18819163 intergenic Phb2 + chr2R_12_18815001 chr2R_18815001 RAL-340_100b 1350 chr2R 18835871 18835892 chr2R 18835977 18835999 6 107 9.5 0.5 5.0 1.0 128 chr2R 18835871 intron CG15083 + chr2R 18835935 intron CG15083 + chr2R 18835999 intron CG15083 + chr2R_6_18835001 chr2R_18835001 RAL-340_100b 1351 chr2R 18862294 18862298 chr2R 18862406 18862407 4 111 0.0 0.0 0.0 4.0 113 chr2R 18862294 intergenic Jheh3 - chr2R 18862350 intergenic Jheh3 - chr2R 18862407 intergenic Jheh3 -,CG43069 + chr2R_4_18860001 chr2R_18860001 RAL-340_100b 1352 chr2R 18862309 18862409 chr2R 18862401 18862519 5 107 0.0 0.0 0.0 5.0 210 chr2R 18862309 intergenic Jheh3 - chr2R 18862414 intergenic Jheh3 -,CG43069 + chr2R 18862519 intergenic CG43069 +,Jheh3 - chr2R_5_18860001 chr2R_18860001 RAL-340_100b 1353 chr2R 18871477 18871495 chr2R 18871653 18871677 7 184 14.5 15.0 14.8 0.4 200 chr2R 18871477 intergenic not near genes chr2R 18871577 intergenic not near genes chr2R 18871677 intergenic not near genes chr2R_7_18870001 chr2R_18870001 RAL-340_100b 1354 chr2R 18871500 18871507 chr2R 18871647 18871693 7 169 11.5 14.0 12.8 0.5 193 chr2R 18871500 intergenic not near genes chr2R 18871596 intergenic not near genes chr2R 18871693 intergenic not near genes chr2R_7_18870001 chr2R_18870001 RAL-340_100b 1355 chr2R 18871514 18871517 chr2R 18871646 18871698 5 171 11.0 13.5 12.2 0.4 184 chr2R 18871514 intergenic not near genes chr2R 18871606 intergenic not near genes chr2R 18871698 intergenic not near genes chr2R_5_18870001 chr2R_18870001 RAL-340_100b 1356 chr2R 18926490 18926530 chr2R 18926592 18926642 18 108 5.5 0.5 3.0 4.5 152 chr2R 18926490 intron sano + chr2R 18926566 intron sano + chr2R 18926642 intron sano + chr2R_18_18925001 chr2R_18925001 RAL-340_100b 1357 chr2R 18928662 18928695 chr2R 18928774 18928807 4 110 7.0 17.0 12.0 0.3 145 chr2R 18928662 intron sano + chr2R 18928734 intron sano + chr2R 18928807 intron sano + chr2R_4_18925001 chr2R_18925001 RAL-340_100b 1358 chr2R 18953138 18953189 chr2R 18953250 18953301 15 112 1.5 5.5 3.5 3.3 163 chr2R 18953138 intron sano + chr2R 18953220 intron sano + chr2R 18953301 intron sano + chr2R_15_18950001 chr2R_18950001 RAL-340_100b 1359 chr2R 18964898 18964932 chr2R 18964999 18965032 12 100 8.0 7.0 7.5 1.4 134 chr2R 18964898 intergenic not near genes chr2R 18964965 intergenic not near genes chr2R 18965032 intergenic not near genes chr2R_12_18960001 chr2R_18960001 RAL-340_100b 1360 chr2R 18964939 18964947 chr2R 18964995 18965042 8 94 5.0 7.0 6.0 1.1 103 chr2R 18964939 intergenic not near genes chr2R 18964990 intergenic not near genes chr2R 18965042 intergenic not near genes chr2R_8_18960001 chr2R_18960001 RAL-340_100b 1361 chr2R 19067698 19067746 chr2R 19067799 19067830 9 99 5.0 6.5 5.8 1.3 132 chr2R 19067698 intron 5-HT1A + chr2R 19067764 intron 5-HT1A + chr2R 19067830 intron 5-HT1A + chr2R_9_19065001 chr2R_19065001 RAL-340_100b 1362 chr2R 19116798 19116847 chr2R 19116919 19116968 25 119 6.5 7.5 7.0 3.1 170 chr2R 19116798 intron 5-HT1A + chr2R 19116883 intron 5-HT1A + chr2R 19116968 intron 5-HT1A + chr2R_25_19115001 chr2R_19115001 RAL-340_100b 1363 chr2R 19246000 19246056 chr2R 19246209 19246264 39 204 7.5 8.0 7.8 4.4 264 chr2R 19246000 intergenic not near genes chr2R 19246132 intergenic not near genes chr2R 19246264 intergenic not near genes chr2R_39_19245001 chr2R_19245001 RAL-340_100b 1364 chr2R 19296422 19296473 chr2R 19296523 19296574 16 98 5.5 7.0 6.2 2.2 152 chr2R 19296422 intron Tab2 + chr2R 19296498 intron Tab2 + chr2R 19296574 intron Tab2 + chr2R_16_19295001 chr2R_19295001 RAL-340_100b 1365 chr2R 19300935 19300992 chr2R 19301043 19301100 35 103 3.0 6.0 4.5 6.4 165 chr2R 19300935 intron Tab2 + chr2R 19301018 intron Tab2 + chr2R 19301100 intron Tab2 + chr2R_35_19300001 chr2R_19300001 RAL-340_100b 1366 chr2R 19569127 19569181 chr2R 19569228 19569272 30 94 6.0 3.5 4.8 5.2 145 chr2R 19569127 intron sm - chr2R 19569200 intron sm - chr2R 19569272 intron sm - chr2R_30_19565001 chr2R_19565001 RAL-340_100b 1367 chr2R 19715834 19715851 chr2R 19723328 19723345 blood 11 7492 12.0 10.5 11.2 0.9 7511 chr2R 19715834 intergenic not near genes chr2R 19719590 intergenic not near genes chr2R 19723345 intergenic not near genes chr2R_11_19715001 chr2R_19715001 RAL-340_100b 1368 chr2R 19773992 19774038 chr2R 19774130 19774167 15 136 8.5 4.0 6.2 2.1 175 chr2R 19773992 intergenic not near genes chr2R 19774080 intergenic not near genes chr2R 19774167 intergenic not near genes chr2R_15_19770001 chr2R_19770001 RAL-340_100b 1369 chr2R 19776573 19776621 chr2R 19779921 19779969 jockey 19 3342 10.0 7.0 8.5 2.0 3396 chr2R 19776573 intergenic not near genes chr2R 19778271 intergenic not near genes chr2R 19779969 intergenic not near genes chr2R_19_19775001 chr2R_19775001 RAL-340_100b 1370 chr2R 19781311 19781366 chr2R 19781415 19781440 23 94 4.5 11.0 7.8 2.6 129 chr2R 19781311 intergenic not near genes chr2R 19781376 intergenic not near genes chr2R 19781440 intergenic not near genes chr2R_23_19780001 chr2R_19780001 RAL-340_100b 1371 chr2R 19821677 19821730 chr2R 19821782 19821826 9 103 11.0 5.0 8.0 1.0 149 chr2R 19821677 intergenic not near genes chr2R 19821752 intergenic not near genes chr2R 19821826 intergenic not near genes chr2R_9_19820001 chr2R_19820001 RAL-340_100b 1372 chr2R 19914836 19914874 chr2R 19922257 19922311 mdg1 8 7430 4.5 8.5 6.5 1.1 7475 chr2R 19914836 intergenic not near genes chr2R 19918574 intergenic not near genes chr2R 19922311 intergenic not near genes chr2R_8_19915001 chr2R_19915001 RAL-340_100b 1373 chr2R 19943249 19943295 chr2R 19943384 19943410 16 128 1.0 7.5 4.2 3.1 161 chr2R 19943249 intergenic not near genes chr2R 19943330 intergenic not near genes chr2R 19943410 intergenic not near genes chr2R_16_19940001 chr2R_19940001 RAL-340_100b 1374 chr2R 19957408 19957462 chr2R 19962632 19962689 copia 26 5223 11.0 5.0 8.0 2.9 5281 chr2R 19957408 intergenic CG44623 + chr2R 19960048 intergenic not near genes chr2R 19962689 intergenic not near genes chr2R_26_19960001 chr2R_19960001 RAL-340_100b 1375 chr2R 19985453 19985500 chr2R 19985564 19985608 19 114 7.5 6.0 6.8 2.4 155 chr2R 19985453 intergenic not near genes chr2R 19985530 intergenic not near genes chr2R 19985608 intergenic not near genes chr2R_19_19985001 chr2R_19985001 RAL-340_100b 1376 chr2R 20018278 20018290 chr2R 20018384 20018396 4 106 18.0 8.5 13.2 0.3 118 chr2R 20018278 intergenic not near genes chr2R 20018337 intergenic not near genes chr2R 20018396 intergenic not near genes chr2R_4_20015001 chr2R_20015001 RAL-340_100b 1377 chr2R 20018297 20018334 chr2R 20018380 20018440 22 101 6.0 7.5 6.8 2.8 143 chr2R 20018297 intergenic not near genes chr2R 20018368 intergenic not near genes chr2R 20018440 intergenic not near genes chr2R_22_20015001 chr2R_20015001 RAL-340_100b 1378 chr2R 20069208 20069251 chr2R 20071872 20071914 opus 13 2662 5.5 3.5 4.5 2.4 2706 chr2R 20069208 intergenic not near genes chr2R 20070561 intergenic not near genes chr2R 20071914 intergenic not near genes chr2R_13_20070001 chr2R_20070001 RAL-340_100b 1379 chr2R 20079816 20079869 chr2R 20079917 20079969 14 100 0.0 9.0 4.5 2.5 153 chr2R 20079816 intergenic not near genes chr2R 20079892 intergenic not near genes chr2R 20079969 intergenic not near genes chr2R_14_20075001 chr2R_20075001 RAL-340_100b 1380 chr2R 20095388 20095427 chr2R 20095510 20095535 18 128 5.5 10.0 7.8 2.0 147 chr2R 20095388 intergenic not near genes chr2R 20095462 intergenic not near genes chr2R 20095535 intergenic not near genes chr2R_18_20095001 chr2R_20095001 RAL-340_100b 1381 chr2R 20199191 20199243 chr2R 20199293 20199309 20 97 7.0 4.0 5.5 3.1 118 chr2R 20199191 intergenic not near genes chr2R 20199250 intergenic not near genes chr2R 20199309 intergenic not near genes chr2R_20_20195001 chr2R_20195001 RAL-340_100b 1382 chr2R 20203057 20203108 chr2R 20203319 20203370 22 257 10.0 2.0 6.0 3.1 313 chr2R 20203057 intergenic not near genes chr2R 20203214 intergenic not near genes chr2R 20203370 intergenic not near genes chr2R_22_20200001 chr2R_20200001 RAL-340_100b 1383 chr2R 20227663 20227671 chr2R 20227783 20227794 6 120 21.5 14.0 17.8 0.3 131 chr2R 20227663 intergenic not near genes chr2R 20227728 intergenic not near genes chr2R 20227794 intergenic not near genes chr2R_6_20225001 chr2R_20225001 RAL-340_100b 1384 chr2R 20227672 20227676 chr2R 20227776 20227800 4 119 21.0 13.0 17.0 0.2 128 chr2R 20227672 intergenic not near genes chr2R 20227736 intergenic not near genes chr2R 20227800 intergenic not near genes chr2R_4_20225001 chr2R_20225001 RAL-340_100b 1385 chr2R 20227706 20227708 chr2R 20227779 20227806 5 88 9.5 13.5 11.5 0.4 100 chr2R 20227706 intergenic not near genes chr2R 20227756 intergenic not near genes chr2R 20227806 intergenic not near genes chr2R_5_20225001 chr2R_20225001 RAL-340_100b 1386 chr2R 20368493 20368496 chr2R 20377680 20377684 roo 4 9188 56.5 11.0 33.8 0.1 9191 chr2R 20368493 intergenic not near genes chr2R 20373088 intergenic not near genes chr2R 20377684 intergenic not near genes chr2R_4_20370001 chr2R_20370001 RAL-340_100b 1387 chr2R 20379132 20379145 chr2R 20379240 20379251 7 108 4.0 0.5 2.2 2.2 119 chr2R 20379132 intergenic not near genes chr2R 20379192 intergenic not near genes chr2R 20379251 intergenic not near genes chr2R_7_20375001 chr2R_20375001 RAL-340_100b 1388 chr2R 20382314 20382358 chr2R 20382423 20382456 16 107 15.5 5.0 10.2 1.4 142 chr2R 20382314 intergenic not near genes chr2R 20382385 intergenic not near genes chr2R 20382456 intergenic not near genes chr2R_16_20380001 chr2R_20380001 RAL-340_100b 1389 chr2R 20395004 20395057 chr2R 20395200 20395245 5 196 5.0 0.0 2.5 1.4 241 chr2R 20395004 intergenic not near genes chr2R 20395124 intergenic not near genes chr2R 20395245 intergenic not near genes chr2R_5_20395001 chr2R_20395001 RAL-340_100b 1390 chr2R 20731280 20731333 chr2R 20731397 20731404 5 107 3.5 0.5 2.0 1.7 124 chr2R 20731280 intron dpr + chr2R 20731342 intron dpr + chr2R 20731404 intron dpr + chr2R_5_20730001 chr2R_20730001 RAL-340_100b 1391 chr2R 20739422 20739477 chr2R 20744215 20744232 F-element 21 4787 7.0 10.0 8.5 2.2 4810 chr2R 20739422 intron dpr + chr2R 20741827 intron dpr + chr2R 20744232 intron dpr + chr2R_21_20740001 chr2R_20740001 RAL-340_100b 1392 chr2R 20769664 20769690 chr2R 20769779 20769804 5 115 15.0 13.5 14.2 0.3 140 chr2R 20769664 intergenic not near genes chr2R 20769734 intergenic not near genes chr2R 20769804 intergenic not near genes chr2R_5_20765001 chr2R_20765001 RAL-340_100b 1393 chr2R 20769692 20769715 chr2R 20769776 20769830 12 112 6.5 13.0 9.8 1.1 138 chr2R 20769692 intergenic not near genes chr2R 20769761 intergenic not near genes chr2R 20769830 intergenic not near genes chr2R_12_20765001 chr2R_20765001 RAL-340_100b 1394 chr2R 20776536 20776557 chr2R 20776612 20776659 5 97 11.5 1.0 6.2 0.7 123 chr2R 20776536 intergenic CG43709 -,CG43710 - chr2R 20776598 intergenic CG43710 -,CG43709 - chr2R 20776659 intergenic CG43710 -,CG43709 - chr2R_5_20775001 chr2R_20775001 RAL-340_100b 1395 chr2R 20783287 20783333 chr2R 20788084 20788098 F-element 12 4792 11.0 6.0 8.5 1.3 4811 chr2R 20783287 intergenic not near genes chr2R 20785692 intergenic not near genes chr2R 20788098 intergenic CG43666 - chr2R_12_20785001 chr2R_20785001 RAL-340_100b 1396 chr2R 20862305 20862345 chr2R 20862424 20862460 13 117 6.5 18.0 12.2 1.0 155 chr2R 20862305 intergenic not near genes chr2R 20862382 intergenic not near genes chr2R 20862460 intergenic not near genes chr2R_13_20860001 chr2R_20860001 RAL-340_100b 1397 chr2R 20863100 20863125 chr2R 20863211 20863236 15 110 9.0 20.5 14.8 0.9 136 chr2R 20863100 intergenic not near genes chr2R 20863168 intergenic not near genes chr2R 20863236 intergenic not near genes chr2R_15_20860001 chr2R_20860001 RAL-340_100b 1398 chr2R 20863131 20863138 chr2R 20863208 20863249 4 98 5.5 20.0 12.8 0.3 118 chr2R 20863131 intergenic not near genes chr2R 20863190 intergenic not near genes chr2R 20863249 intergenic not near genes chr2R_4_20860001 chr2R_20860001 RAL-340_100b 1399 chr2R 20927717 20927730 chr2R 20927808 20927832 9 95 13.0 9.5 11.2 0.7 115 chr2R 20927717 intron Rx + chr2R 20927774 intron Rx + chr2R 20927832 intron Rx + chr2R_9_20925001 chr2R_20925001 RAL-340_100b 1400 chr2R 20927734 20927742 chr2R 20927805 20927810 9 84 9.5 9.0 9.2 0.9 76 chr2R 20927734 intron Rx + chr2R 20927772 intron Rx + chr2R 20927810 intron Rx + chr2R_9_20925001 chr2R_20925001 RAL-340_100b 1401 chr2R 20962894 20962938 chr2R 20963010 20963061 11 119 4.5 4.0 4.2 2.1 167 chr2R 20962894 intergenic not near genes chr2R 20962978 intergenic not near genes chr2R 20963061 intergenic not near genes chr2R_11_20960001 chr2R_20960001 RAL-340_100b 1402 chr2R 20967002 20967030 chr2R 20967103 20967132 10 102 17.0 1.0 9.0 1.0 130 chr2R 20967002 intergenic not near genes chr2R 20967067 intergenic not near genes chr2R 20967132 intergenic not near genes chr2R_10_20965001 chr2R_20965001 RAL-340_100b 1403 chr2R 20967038 20967049 chr2R 20967140 20967151 4 102 13.5 0.5 7.0 0.5 113 chr2R 20967038 intergenic not near genes chr2R 20967094 intergenic not near genes chr2R 20967151 intergenic not near genes chr2R_4_20965001 chr2R_20965001 RAL-340_100b 1404 chr2R 21029498 21029548 chr2R 21029605 21029655 25 103 8.0 8.0 8.0 2.8 157 chr2R 21029498 3` UTR CR45148 - chr2R 21029576 3` UTR CR45148 - chr2R 21029655 3` UTR CR45148 - chr2R_25_21025001 chr2R_21025001 RAL-340_100b 1405 chr2R 21151093 21151143 chr2R 21153751 21153801 opus 19 2657 8.0 7.0 7.5 2.2 2708 chr2R 21151093 intron CG30389 - chr2R 21152447 intron CG30389 - chr2R 21153801 intron CG30389 - chr2R_19_21150001 chr2R_21150001 RAL-340_100b 1406 chr2R 21217320 21217333 chr2R 21217417 21217444 4 107 14.0 0.0 7.0 0.5 124 chr2R 21217320 exon CG15661 - chr2R 21217382 5` UTR CG15661 - chr2R 21217444 intron CG15661 - chr2R_4_21215001 chr2R_21215001 RAL-340_100b 1407 chr2R 21260048 21260056 chr2R 21260169 21260177 5 121 17.5 17.5 17.5 0.3 129 chr2R 21260048 intron Rgk3 + chr2R 21260112 intron Rgk3 + chr2R 21260177 intron Rgk3 + chr2R_5_21260001 chr2R_21260001 RAL-340_100b 1408 chr2R 21285408 21285435 chr2R 21285510 21285537 12 100 12.0 20.0 16.0 0.7 129 chr2R 21285408 3` UTR,3` UTR MFS16 +,CG10505 - chr2R 21285472 3` UTR,3` UTR MFS16 +,CG10505 - chr2R 21285537 3` UTR,3` UTR MFS16 +,CG10505 - chr2R_12_21285001 chr2R_21285001 RAL-340_100b 1409 chr2R 21373374 21373385 chr2R 21373717 21373728 6 343 14.5 8.5 11.5 0.5 354 chr2R 21373374 intron cv-2 - chr2R 21373551 intron cv-2 - chr2R 21373728 intron cv-2 - chr2R_6_21370001 chr2R_21370001 RAL-340_100b 1410 chr2R 21373389 21373420 chr2R 21373716 21373732 18 328 4.0 8.5 6.2 2.5 343 chr2R 21373389 intron cv-2 - chr2R 21373560 intron cv-2 - chr2R 21373732 intron cv-2 - chr2R_18_21370001 chr2R_21370001 RAL-340_100b 1411 chr2R 21381915 21381937 chr2R 21382027 21382049 8 112 8.5 1.0 4.8 1.4 134 chr2R 21381915 intergenic not near genes chr2R 21381982 intergenic not near genes chr2R 21382049 intergenic not near genes chr2R_8_21380001 chr2R_21380001 RAL-340_100b 1412 chr2R 21408346 21408387 chr2R 21408463 21408504 11 117 14.0 0.5 7.2 1.3 158 chr2R 21408346 intron Sdc - chr2R 21408425 intron Sdc - chr2R 21408504 intron Sdc - chr2R_11_21405001 chr2R_21405001 RAL-340_100b 1413 chr2R 21417256 21417268 chr2R 21417382 21417393 5 126 10.5 0.5 5.5 0.8 137 chr2R 21417256 intron Sdc - chr2R 21417324 intron Sdc - chr2R 21417393 intron Sdc - chr2R_5_21415001 chr2R_21415001 RAL-340_100b 1414 chr2R 21467741 21467757 chr2R 21467852 21467857 8 107 28.5 0.0 14.2 0.5 116 chr2R 21467741 intron Sdc - chr2R 21467799 intron Sdc - chr2R 21467857 intron Sdc - chr2R_8_21465001 chr2R_21465001 RAL-340_100b 1415 chr2R 21469916 21469952 chr2R 21470028 21470038 6 107 6.0 7.5 6.8 0.8 122 chr2R 21469916 intron Sdc - chr2R 21469977 intron Sdc - chr2R 21470038 intron Sdc - chr2R_6_21465001 chr2R_21465001 RAL-340_100b 1416 chr2R 21532869 21532881 chr2R 21532972 21532984 6 103 10.0 3.5 6.8 0.8 115 chr2R 21532869 intron Egfr + chr2R 21532926 intron Egfr + chr2R 21532984 intron Egfr + chr2R_6_21530001 chr2R_21530001 RAL-340_100b 1417 chr2R 21540665 21540696 chr2R 21540905 21540939 15 240 9.0 4.0 6.5 2.0 274 chr2R 21540665 intron Egfr + chr2R 21540802 intron Egfr + chr2R 21540939 intron Egfr + chr2R_15_21540001 chr2R_21540001 RAL-340_100b 1418 chr2R 21546013 21546065 chr2R 21546117 21546154 23 98 11.0 12.0 11.5 1.8 141 chr2R 21546013 intron Egfr + chr2R 21546084 intron Egfr + chr2R 21546154 intron Egfr + chr2R_23_21545001 chr2R_21545001 RAL-340_100b 1419 chr2R 21546760 21546821 chr2R 21546866 21546879 26 82 3.5 8.0 5.8 3.8 119 chr2R 21546760 intron Egfr + chr2R 21546820 intron Egfr + chr2R 21546879 intron Egfr + chr2R_26_21545001 chr2R_21545001 RAL-340_100b 1420 chr2R 21578896 21578903 chr2R 21578993 21579005 7 98 20.0 13.5 16.8 0.4 109 chr2R 21578896 intergenic not near genes chr2R 21578950 intergenic not near genes chr2R 21579005 intergenic not near genes chr2R_7_21575001 chr2R_21575001 RAL-340_100b 1421 chr2R 21578904 21578942 chr2R 21578992 21579000 24 91 9.5 13.5 11.5 1.9 96 chr2R 21578904 intergenic not near genes chr2R 21578952 intergenic not near genes chr2R 21579000 intergenic not near genes chr2R_24_21575001 chr2R_21575001 RAL-340_100b 1422 chr2R 21584095 21584150 chr2R 21584213 21584268 14 114 4.0 4.5 4.2 2.7 173 chr2R 21584095 exon CG30222 + chr2R 21584182 exon CG30222 + chr2R 21584268 exon CG30222 + chr2R_14_21580001 chr2R_21580001 RAL-340_100b 1423 chr2R 21592827 21592839 chr2R 21592931 21592936 5 105 41.0 17.0 29.0 0.2 109 chr2R 21592827 intergenic not near genes chr2R 21592882 intergenic not near genes chr2R 21592936 intergenic not near genes chr2R_5_21590001 chr2R_21590001 RAL-340_100b 1424 chr2R 21592846 21592849 chr2R 21592929 21592947 4 95 32.5 16.0 24.2 0.2 101 chr2R 21592846 intergenic not near genes chr2R 21592896 intergenic not near genes chr2R 21592947 intergenic not near genes chr2R_4_21590001 chr2R_21590001 RAL-340_100b 1425 chr2R 21699889 21699943 chr2R 21700002 21700054 26 109 6.0 6.0 6.0 3.7 165 chr2R 21699889 intron HmgZ - chr2R 21699972 intron HmgZ - chr2R 21700054 intron HmgZ - chr2R_26_21695001 chr2R_21695001 RAL-340_100b 1426 chr2R 21721552 21721610 chr2R 21721665 21721712 100 107 21.5 22.0 21.8 4.4 160 chr2R 21721552 intron LBR + chr2R 21721632 intron LBR + chr2R 21721712 intron LBR + chr2R_100_21720001 chr2R_21720001 RAL-340_100b 1427 chr2R 21738249 21738311 chr2R 21747435 21747450 roo 12 9177 1.5 9.0 5.2 1.9 9201 chr2R 21738249 intergenic not near genes chr2R 21742850 intergenic not near genes chr2R 21747450 intergenic not near genes chr2R_12_21740001 chr2R_21740001 RAL-340_100b 1428 chr2R 21753066 21753096 chr2R 21753575 21753597 roo 18 506 12.0 11.0 11.5 1.4 531 chr2R 21753066 intergenic not near genes chr2R 21753332 intergenic not near genes chr2R 21753597 intergenic not near genes chr2R_18_21750001 chr2R_21750001 RAL-340_100b 1429 chr2R 21753098 21753109 chr2R 21753573 21753619 roo 4 493 9.5 11.0 10.2 0.4 521 chr2R 21753098 intergenic not near genes chr2R 21753358 intergenic not near genes chr2R 21753619 intergenic not near genes chr2R_4_21750001 chr2R_21750001 RAL-340_100b 1430 chr2R 21759535 21759592 chr2R 21759647 21759704 27 106 9.5 5.5 7.5 3.2 169 chr2R 21759535 intergenic not near genes chr2R 21759620 intergenic not near genes chr2R 21759704 intergenic not near genes chr2R_27_21755001 chr2R_21755001 RAL-340_100b 1431 chr2R 21809502 21809557 chr2R 21817767 21817792 roo 26 8259 8.5 11.5 10.0 2.4 8290 chr2R 21809502 intergenic not near genes chr2R 21813647 intergenic not near genes chr2R 21817792 intergenic not near genes chr2R_26_21810001 chr2R_21810001 RAL-340_100b 1432 chr2R 21832400 21832450 chr2R 21832831 21832879 25 422 5.5 7.5 6.5 3.3 479 chr2R 21832400 intergenic CG34040 - chr2R 21832640 exon CG34040 - chr2R 21832879 exon CG34040 - chr2R_25_21830001 chr2R_21830001 RAL-340_100b 1433 chr2R 21870931 21870971 chr2R 21871035 21871060 23 100 7.0 8.0 7.5 2.7 129 chr2R 21870931 intergenic not near genes chr2R 21870996 intergenic not near genes chr2R 21871060 intergenic not near genes chr2R_23_21870001 chr2R_21870001 RAL-340_100b 1434 chr2R 21888298 21888315 chr2R 21888409 21888431 5 115 4.0 12.0 8.0 0.6 133 chr2R 21888298 intron Fili + chr2R 21888364 intron Fili + chr2R 21888431 intron Fili + chr2R_5_21885001 chr2R_21885001 RAL-340_100b 1435 chr2R 21901474 21901515 chr2R 21901665 21901702 11 188 4.5 1.0 2.8 2.9 228 chr2R 21901474 intron Fili + chr2R 21901588 intron Fili + chr2R 21901702 intron Fili + chr2R_11_21900001 chr2R_21900001 RAL-340_100b 1436 chr2R 21963188 21963216 chr2R 21963283 21963326 15 107 14.5 10.0 12.2 1.1 138 chr2R 21963188 intergenic not near genes chr2R 21963257 intergenic not near genes chr2R 21963326 intergenic not near genes chr2R_15_21960001 chr2R_21960001 RAL-340_100b 1437 chr2R 22013550 22013554 chr2R 22013655 22013660 5 108 35.5 16.0 25.8 0.2 110 chr2R 22013550 intron CG34370 - chr2R 22013605 intron CG34370 - chr2R 22013660 intron CG34370 - chr2R_5_22010001 chr2R_22010001 RAL-340_100b 1438 chr2R 22013555 22013595 chr2R 22013651 22013706 34 106 10.5 15.5 13.0 2.4 151 chr2R 22013555 intron CG34370 - chr2R 22013630 intron CG34370 - chr2R 22013706 intron CG34370 - chr2R_34_22010001 chr2R_22010001 RAL-340_100b 1439 chr2R 22016064 22016066 chr2R 24975394 24975439 4 2959357 48.5 15.0 31.8 0.1 2959375 chr2R 22016064 intron CG34370 - chr2R 23495752 intergenic not near genes chr2R 24975439 5` UTR CR45252 + chr2R_4_23495001 chr2R_23495001 RAL-340_100b 1440 chr2R 22029457 22029502 chr2R 22029620 22029665 9 163 6.5 7.5 7.0 1.1 208 chr2R 22029457 intron CG34370 - chr2R 22029561 intron CG34370 - chr2R 22029665 intron CG34370 - chr2R_9_22025001 chr2R_22025001 RAL-340_100b 1441 chr2R 22053726 22053750 chr2R 22053891 22053915 6 163 2.0 6.5 4.2 1.2 189 chr2R 22053726 intergenic not near genes chr2R 22053820 intergenic not near genes chr2R 22053915 intergenic not near genes chr2R_6_22050001 chr2R_22050001 RAL-340_100b 1442 chr2R 22072681 22072708 chr2R 22072780 22072818 8 102 3.5 8.0 5.8 1.2 137 chr2R 22072681 intron CG11474 - chr2R 22072750 intron CG11474 - chr2R 22072818 exon CG11474 - chr2R_8_22070001 chr2R_22070001 RAL-340_100b 1443 chr2R 22114121 22114147 chr2R 22114226 22114248 7 102 10.5 13.5 12.0 0.5 127 chr2R 22114121 intron,exon Vrp1 -,CG30280 + chr2R 22114184 intron,exon Vrp1 -,CG30280 + chr2R 22114248 intron,exon Vrp1 -,CG30280 + chr2R_7_22110001 chr2R_22110001 RAL-340_100b 1444 chr2R 22114148 22114165 chr2R 22114218 22114269 11 89 6.0 10.0 8.0 1.2 121 chr2R 22114148 intron,exon Vrp1 -,CG30280 + chr2R 22114208 intron,exon Vrp1 -,CG30280 + chr2R 22114269 intron,exon Vrp1 -,CG30280 + chr2R_11_22110001 chr2R_22110001 RAL-340_100b 1445 chr2R 22132271 22132278 chr2R 22132376 22132383 4 105 14.0 8.0 11.0 0.3 112 chr2R 22132271 intergenic not near genes chr2R 22132327 intergenic not near genes chr2R 22132383 intergenic not near genes chr2R_4_22130001 chr2R_22130001 RAL-340_100b 1446 chr2R 22135426 22135454 chr2R 22135548 22135572 15 129 23.5 6.5 15.0 0.9 146 chr2R 22135426 intergenic not near genes chr2R 22135499 intergenic not near genes chr2R 22135572 intergenic not near genes chr2R_15_22135001 chr2R_22135001 RAL-340_100b 1447 chr2R 22185671 22185685 chr2R 22185795 22185809 4 124 8.5 2.0 5.2 0.6 138 chr2R 22185671 3` UTR MED16 + chr2R 22185740 3` UTR MED16 + chr2R 22185809 3` UTR MED16 + chr2R_4_22185001 chr2R_22185001 RAL-340_100b 1448 chr2R 22208581 22208622 chr2R 22208967 22209008 12 384 5.5 7.5 6.5 1.6 427 chr2R 22208581 3` UTR CG3264 - chr2R 22208794 3` UTR CG3264 - chr2R 22209008 exon CG3264 - chr2R_12_22205001 chr2R_22205001 RAL-340_100b 1449 chr2R 4825123 4825123 chr2R 22311216 22311216 5 17486093 22.0 27.0 24.5 0.2 17486093 chr2R 4825123 intergenic not near genes chr2R 13568170 intergenic not near genes chr2R 22311216 intron wdp - chr2R_5_13565001 chr2R_13565001 RAL-340_100b 1450 chr2R 4825123 4825123 chr2R 22311217 22311217 4 17486094 22.0 26.5 24.2 0.2 17486094 chr2R 4825123 intergenic not near genes chr2R 13568170 intergenic not near genes chr2R 22311217 intron wdp - chr2R_4_13565001 chr2R_13565001 RAL-340_100b 1451 chr2R 22349677 22349698 chr2R 22351486 22351507 jockey 8 1808 17.5 20.0 18.8 0.4 1830 chr2R 22349677 intron Liprin-gamma - chr2R 22350592 intron Liprin-gamma - chr2R 22351507 intron Liprin-gamma - chr2R_8_22350001 chr2R_22350001 RAL-340_100b 1452 chr2R 22349702 22349721 chr2R 22351476 22351530 jockey 13 1802 11.0 16.0 13.5 0.9 1828 chr2R 22349702 intron Liprin-gamma - chr2R 22350616 intron Liprin-gamma - chr2R 22351530 intron Liprin-gamma - chr2R_13_22350001 chr2R_22350001 RAL-340_100b 1453 chr2R 22377791 22378010 chr2R 22377895 22378076 23 101 29.0 3.5 16.2 1.3 285 chr2R 22377791 3` UTR Rtf1 + chr2R 22377934 3` UTR Rtf1 + chr2R 22378076 3` UTR Rtf1 + chr2R_23_22375001 chr2R_22375001 RAL-340_100b 1454 chr2R 22475985 22476029 chr2R 22476363 22476412 16 381 10.0 5.5 7.8 1.8 427 chr2R 22475985 exon CG45062 - chr2R 22476198 exon CG45062 - chr2R 22476412 3` UTR CG45063 - chr2R_16_22475001 chr2R_22475001 RAL-340_100b 1455 chr2R 22503854 22503891 chr2R 22503964 22504011 19 118 1.0 13.0 7.0 2.4 157 chr2R 22503854 intron px - chr2R 22503932 intron px - chr2R 22504011 intron px - chr2R_19_22500001 chr2R_22500001 RAL-340_100b 1456 chr2R 22505949 22505959 chr2R 22506073 22506083 8 124 13.5 0.0 6.8 1.0 134 chr2R 22505949 intron px - chr2R 22506016 intron px - chr2R 22506083 intron px - chr2R_8_22505001 chr2R_22505001 RAL-340_100b 1457 chr2R 22525725 22525737 chr2R 22529305 22529317 jockey 7 3579 32.5 24.5 28.5 0.2 3592 chr2R 22525725 intron px - chr2R 22527521 intron px - chr2R 22529317 intron px - chr2R_7_22525001 chr2R_22525001 RAL-340_100b 1458 chr2R 22525739 22525752 chr2R 22529303 22529332 jockey 12 3575 24.0 22.5 23.2 0.5 3593 chr2R 22525739 intron px - chr2R 22527536 intron px - chr2R 22529332 intron px - chr2R_12_22525001 chr2R_22525001 RAL-340_100b 1459 chr2R 22525758 22525760 chr2R 22529333 22529340 jockey 4 3579 19.0 42.5 30.8 0.1 3582 chr2R 22525758 intron px - chr2R 22527549 intron px - chr2R 22529340 intron px - chr2R_4_22525001 chr2R_22525001 RAL-340_100b 1460 chr2R 22525765 22525771 chr2R 22529330 22529351 jockey 9 3578 16.5 42.0 29.2 0.3 3586 chr2R 22525765 intron px - chr2R 22527558 intron px - chr2R 22529351 intron px - chr2R_9_22525001 chr2R_22525001 RAL-340_100b 1461 chr2R 22525774 22525782 chr2R 22529324 22529340 jockey 6 3564 11.5 36.0 23.8 0.2 3566 chr2R 22525774 intron px - chr2R 22527557 intron px - chr2R 22529340 intron px - chr2R_6_22525001 chr2R_22525001 RAL-340_100b 1462 chr2R 22545597 22545602 chr2R 22545701 22545706 5 104 34.5 11.0 22.8 0.2 109 chr2R 22545597 intron px - chr2R 22545652 intron px - chr2R 22545706 intron px - chr2R_5_22545001 chr2R_22545001 RAL-340_100b 1463 chr2R 22545604 22545652 chr2R 22545698 22545740 41 101 11.0 10.0 10.5 3.6 136 chr2R 22545604 intron px - chr2R 22545672 intron px - chr2R 22545740 intron px - chr2R_41_22545001 chr2R_22545001 RAL-340_100b 1464 chr2R 22588126 22588153 chr2R 22588246 22588273 18 115 27.5 43.0 35.2 0.5 147 chr2R 22588126 intron dnr1 - chr2R 22588200 intron dnr1 - chr2R 22588273 intron dnr1 - chr2R_18_22585001 chr2R_22585001 RAL-340_100b 1465 chr2R 22599134 22599190 chr2R 22599253 22599282 19 113 7.0 5.0 6.0 2.7 148 chr2R 22599134 intron CG4269 + chr2R 22599208 intron CG4269 + chr2R 22599282 intron CG4269 + chr2R_19_22595001 chr2R_22595001 RAL-340_100b 1466 chr2R 22605903 22605963 chr2R 22606013 22606072 18 108 0.5 8.0 4.2 3.5 169 chr2R 22605903 intron RpS16 + chr2R 22605988 intron RpS16 + chr2R 22606072 5` UTR RpS16 + chr2R_18_22605001 chr2R_22605001 RAL-340_100b 1467 chr2R 22629385 22629387 chr2R 22629481 22629486 4 100 11.0 10.0 10.5 0.3 101 chr2R 22629385 intron CG33143 + chr2R 22629436 intron CG33143 + chr2R 22629486 intron CG33143 + chr2R_4_22625001 chr2R_22625001 RAL-340_100b 1468 chr2R 22646448 22646459 chr2R 22646565 22646576 7 117 8.0 0.0 4.0 1.4 128 chr2R 22646448 intergenic CG2852 -,CG30195 - chr2R 22646512 intergenic CG30195 -,CG2852 - chr2R 22646576 intergenic CG30195 -,CG2852 - chr2R_7_22645001 chr2R_22645001 RAL-340_100b 1469 chr2R 22654340 22654397 chr2R 22654446 22654501 20 103 4.0 8.5 6.2 2.8 161 chr2R 22654340 exon Cyp6d2 - chr2R 22654420 5` UTR Cyp6d2 - chr2R 22654501 5` UTR Cyp6d2 - chr2R_20_22650001 chr2R_22650001 RAL-340_100b 1470 chr2R 22774935 22774993 chr2R 22775379 22775417 jockey 22 442 9.0 9.0 9.0 2.2 482 chr2R 22774935 intron CG42260 - chr2R 22775176 intron CG42260 - chr2R 22775417 intron CG42260 - chr2R_22_22775001 chr2R_22775001 RAL-340_100b 1471 chr2R 22787591 22787593 chr2R 22787739 22787751 7 156 10.5 5.5 8.0 0.8 160 chr2R 22787591 intron CG42260 - chr2R 22787671 intron CG42260 - chr2R 22787751 intron CG42260 - chr2R_7_22785001 chr2R_22785001 RAL-340_100b 1472 chr2R 22843006 22843048 chr2R 22844993 22845035 flea 10 1986 7.5 10.5 9.0 1.0 2029 chr2R 22843006 intergenic CG9826 + chr2R 22844020 intergenic not near genes chr2R 22845035 intergenic not near genes chr2R_10_22840001 chr2R_22840001 RAL-340_100b 1473 chr2R 22907390 22907394 chr2R 22907502 22907512 4 116 19.0 18.0 18.5 0.2 122 chr2R 22907390 intron nahoda + chr2R 22907451 intron nahoda + chr2R 22907512 intron nahoda + chr2R_4_22905001 chr2R_22905001 RAL-340_100b 1474 chr2R 22907396 22907435 chr2R 22907499 22907506 21 98 9.5 17.5 13.5 1.4 110 chr2R 22907396 intron nahoda + chr2R 22907451 intron nahoda + chr2R 22907506 intron nahoda + chr2R_21_22905001 chr2R_22905001 RAL-340_100b 1475 chr2R 22945031 22945060 chr2R 22945170 22945189 15 138 9.0 8.0 8.5 1.6 158 chr2R 22945031 exon CG42694 + chr2R 22945110 3` UTR CG42694 + chr2R 22945189 intergenic CG42694 + chr2R_15_22945001 chr2R_22945001 RAL-340_100b 1476 chr2R 22945064 22945083 chr2R 22945163 22945222 17 126 7.5 5.0 6.2 2.4 158 chr2R 22945064 exon CG42694 + chr2R 22945143 3` UTR CG42694 + chr2R 22945222 intergenic CG42694 + chr2R_17_22945001 chr2R_22945001 RAL-340_100b 1477 chr2R 22946564 22946569 chr2R 22946645 22946665 5 90 13.0 20.5 16.8 0.3 101 chr2R 22946564 intergenic not near genes chr2R 22946614 intergenic not near genes chr2R 22946665 intergenic not near genes chr2R_5_22945001 chr2R_22945001 RAL-340_100b 1478 chr2R 22951689 22951867 chr2R 22951854 22951934 49 158 0.0 0.0 0.0 49.0 245 chr2R 22951689 3` UTR CR32835 - chr2R 22951812 3` UTR CR32835 - chr2R 22951934 intron CR32835 - chr2R_49_22950001 chr2R_22950001 RAL-340_100b 1479 chr2R 23000111 23000169 chr2R 23000216 23000274 25 97 4.0 9.0 6.5 3.3 163 chr2R 23000111 intron twi + chr2R 23000192 intron twi + chr2R 23000274 intron twi + chr2R_25_23000001 chr2R_23000001 RAL-340_100b 1480 chr2R 23045309 23045360 chr2R 23045548 23045573 30 234 7.5 6.5 7.0 3.8 264 chr2R 23045309 intron twi + chr2R 23045441 intron twi + chr2R 23045573 intron twi + chr2R_30_23045001 chr2R_23045001 RAL-340_100b 1481 chr2R 23052625 23052666 chr2R 23052726 23052767 15 100 4.5 7.0 5.8 2.2 142 chr2R 23052625 intergenic not near genes chr2R 23052696 intergenic not near genes chr2R 23052767 intergenic not near genes chr2R_15_23050001 chr2R_23050001 RAL-340_100b 1482 chr2R 23052670 23052685 chr2R 23052725 23052746 11 84 3.0 7.0 5.0 1.8 76 chr2R 23052670 intergenic not near genes chr2R 23052708 intergenic not near genes chr2R 23052746 intergenic not near genes chr2R_11_23050001 chr2R_23050001 RAL-340_100b 1483 chr2R 23097831 23097835 chr2R 23097947 23097949 4 116 24.5 9.5 17.0 0.2 118 chr2R 23097831 intergenic not near genes chr2R 23097890 intergenic not near genes chr2R 23097949 intergenic not near genes chr2R_4_23095001 chr2R_23095001 RAL-340_100b 1484 chr2R 23097840 23097886 chr2R 23097945 23097995 19 107 6.5 8.0 7.2 2.3 155 chr2R 23097840 intergenic not near genes chr2R 23097918 intergenic not near genes chr2R 23097995 intergenic not near genes chr2R_19_23095001 chr2R_23095001 RAL-340_100b 1485 chr2R 23134813 23134840 chr2R 23134920 23134938 12 102 2.0 40.0 21.0 0.5 125 chr2R 23134813 intergenic not near genes chr2R 23134876 intergenic not near genes chr2R 23134938 intergenic not near genes chr2R_12_23130001 chr2R_23130001 RAL-340_100b 1486 chr2R 23134847 23134850 chr2R 23134924 23134927 5 91 4.0 41.0 22.5 0.2 80 chr2R 23134847 intergenic not near genes chr2R 23134887 intergenic not near genes chr2R 23134927 intergenic not near genes chr2R_5_23130001 chr2R_23130001 RAL-340_100b 1487 chr2R 23158333 23158351 chr2R 23158424 23158441 6 97 14.0 18.0 16.0 0.4 108 chr2R 23158333 intron CG9899 + chr2R 23158387 intron CG9899 + chr2R 23158441 intron CG9899 + chr2R_6_23155001 chr2R_23155001 RAL-340_100b 1488 chr2R 23275643 23275674 chr2R 23275760 23275781 9 110 8.5 12.0 10.2 0.8 138 chr2R 23275643 intergenic ord - chr2R 23275712 intergenic ord - chr2R 23275781 intergenic ord - chr2R_9_23275001 chr2R_23275001 RAL-340_100b 1489 chr2R 23275676 23275681 chr2R 23275753 23275763 5 92 6.0 10.0 8.0 0.6 87 chr2R 23275676 intergenic ord - chr2R 23275720 intergenic ord - chr2R 23275763 intergenic ord - chr2R_5_23275001 chr2R_23275001 RAL-340_100b 1490 chr2R 23356251 23356269 chr2R 23356365 23356369 9 112 16.0 8.0 12.0 0.7 118 chr2R 23356251 3` UTR Rpi + chr2R 23356310 3` UTR Rpi + chr2R 23356369 3` UTR Rpi + chr2R_9_23355001 chr2R_23355001 RAL-340_100b 1491 chr2R 23356270 23356310 chr2R 23356362 23356378 29 107 7.0 8.0 7.5 3.4 108 chr2R 23356270 3` UTR Rpi + chr2R 23356324 3` UTR Rpi + chr2R 23356378 3` UTR,3` UTR Rpi +,CG3500 - chr2R_29_23355001 chr2R_23355001 RAL-340_100b 1492 chr2R 23402586 23402642 chr2R 23407687 23407743 flea 11 5093 7.0 9.0 8.0 1.2 5157 chr2R 23402586 intergenic CG3520 - chr2R 23405164 intergenic not near genes chr2R 23407743 intergenic not near genes chr2R_11_23405001 chr2R_23405001 RAL-340_100b 1493 chr2R 23429183 23429244 chr2R 23429433 23429469 33 239 15.5 5.5 10.5 2.9 286 chr2R 23429183 intron CG9815 - chr2R 23429326 intron CG9815 - chr2R 23429469 intron CG9815 - chr2R_33_23425001 chr2R_23425001 RAL-340_100b 1494 chr2R 23437209 23437247 chr2R 23437311 23437334 19 96 11.5 12.0 11.8 1.5 125 chr2R 23437209 intergenic not near genes chr2R 23437272 intergenic not near genes chr2R 23437334 intergenic not near genes chr2R_19_23435001 chr2R_23435001 RAL-340_100b 1495 chr2R 23461124 23461140 chr2R 23461226 23461242 9 100 33.5 24.0 28.8 0.3 118 chr2R 23461124 intron CG43795 + chr2R 23461183 intron CG43795 + chr2R 23461242 intron CG43795 + chr2R_9_23460001 chr2R_23460001 RAL-340_100b 1496 chr2R 23500339 23500349 chr2R 23500624 23500639 8 289 12.0 6.0 9.0 0.8 300 chr2R 23500339 3` UTR CG13558 + chr2R 23500489 3` UTR CG13558 + chr2R 23500639 3` UTR CG13558 + chr2R_8_23500001 chr2R_23500001 RAL-340_100b 1497 chr2R 23500350 23500359 chr2R 23500610 23500648 6 281 10.5 5.0 7.8 0.7 298 chr2R 23500350 3` UTR CG13558 + chr2R 23500499 3` UTR CG13558 + chr2R 23500648 3` UTR CG13558 + chr2R_6_23500001 chr2R_23500001 RAL-340_100b 1498 chr2R 23508896 23508944 chr2R 23509038 23509086 18 141 3.0 8.5 5.8 2.6 190 chr2R 23508896 intergenic not near genes chr2R 23508991 intergenic not near genes chr2R 23509086 intergenic not near genes chr2R_18_23505001 chr2R_23505001 RAL-340_100b 1499 chr2R 23522396 23522446 chr2R 23522494 23522553 18 102 8.5 3.0 5.8 2.6 157 chr2R 23522396 intron RabX1 - chr2R 23522474 intron RabX1 - chr2R 23522553 intron RabX1 - chr2R_18_23520001 chr2R_23520001 RAL-340_100b 1500 chr2R 23529550 23529607 chr2R 23537149 23537168 412 14 7586 6.5 10.5 8.5 1.5 7618 chr2R 23529550 intron bw - chr2R 23533359 intron bw - chr2R 23537168 exon bw - chr2R_14_23530001 chr2R_23530001 RAL-340_100b 1501 chr2R 23595873 23595915 chr2R 23595974 23596016 9 101 10.0 10.0 10.0 0.8 143 chr2R 23595873 intron apt + chr2R 23595944 intron apt + chr2R 23596016 intron apt + chr2R_9_23595001 chr2R_23595001 RAL-340_100b 1502 chr2R 23595917 23595929 chr2R 23595973 23596030 10 96 8.0 10.0 9.0 1.0 113 chr2R 23595917 intron apt + chr2R 23595974 intron apt + chr2R 23596030 intron apt + chr2R_10_23595001 chr2R_23595001 RAL-340_100b 1503 chr2R 23607015 23607193 chr2R 23607121 23607301 27 108 1.5 2.5 2.0 9.0 286 chr2R 23607015 intron CG17664 - chr2R 23607158 intron CG17664 - chr2R 23607301 intron CG17664 - chr2R_27_23605001 chr2R_23605001 RAL-340_100b 1504 chr2R 23721780 23721786 chr2R 23721889 23721895 4 109 28.0 30.0 29.0 0.1 115 chr2R 23721780 intron Sesn + chr2R 23721838 intron Sesn + chr2R 23721895 intron Sesn + chr2R_4_23720001 chr2R_23720001 RAL-340_100b 1505 chr2R 23739722 23739732 chr2R 23739823 23739833 5 100 22.5 13.5 18.0 0.3 111 chr2R 23739722 intron egl - chr2R 23739778 intron egl - chr2R 23739833 intron egl - chr2R_5_23735001 chr2R_23735001 RAL-340_100b 1506 chr2R 23771292 23771305 chr2R 23771395 23771408 9 102 2.0 3.5 2.8 2.4 116 chr2R 23771292 intron CG9850 - chr2R 23771350 intron CG9850 - chr2R 23771408 intron CG9850 - chr2R_9_23770001 chr2R_23770001 RAL-340_100b 1507 chr2R 23784446 23784456 chr2R 23784549 23784558 8 103 36.5 11.0 23.8 0.3 112 chr2R 23784446 intron CG9850 - chr2R 23784502 intron CG9850 - chr2R 23784558 intron CG9850 - chr2R_8_23780001 chr2R_23780001 RAL-340_100b 1508 chr2R 23784459 23784506 chr2R 23784548 23784609 21 98 9.0 11.5 10.2 1.9 150 chr2R 23784459 intron CG9850 - chr2R 23784534 intron CG9850 - chr2R 23784609 intron CG9850 - chr2R_21_23780001 chr2R_23780001 RAL-340_100b 1509 chr2R 23865802 23865854 chr2R 23865909 23865937 22 100 6.5 3.5 5.0 3.7 135 chr2R 23865802 intron CG5569 + chr2R 23865870 intron CG5569 + chr2R 23865937 intron CG5569 + chr2R_22_23865001 chr2R_23865001 RAL-340_100b 1510 chr2R 23914275 23914314 chr2R 23921924 23921940 412 17 7645 17.0 11.5 14.2 1.1 7665 chr2R 23914275 exon kcc + chr2R 23918108 intron kcc + chr2R 23921940 intron kcc + chr2R_17_23915001 chr2R_23915001 RAL-340_100b 1511 chr2R 23914320 23914332 chr2R 23921922 23921958 412 7 7636 11.0 10.0 10.5 0.6 7638 chr2R 23914320 exon kcc + chr2R 23918139 intron kcc + chr2R 23921958 intron kcc + chr2R_7_23915001 chr2R_23915001 RAL-340_100b 1512 chr2R 23986489 23986547 chr2R 23986594 23986598 27 102 6.0 7.0 6.5 3.6 109 chr2R 23986489 intron Phm - chr2R 23986544 intron Phm - chr2R 23986598 intron Phm - chr2R_27_23985001 chr2R_23985001 RAL-340_100b 1513 chr2R 24031356 24031413 chr2R 24031465 24031483 19 103 7.0 4.0 5.5 2.9 127 chr2R 24031356 5` UTR CG30172 - chr2R 24031420 5` UTR CG30172 - chr2R 24031483 intergenic Chi -,CG30172 - chr2R_19_24030001 chr2R_24030001 RAL-340_100b 1514 chr2R 24147051 24147097 chr2R 24154647 24154680 412 12 7595 8.5 9.0 8.8 1.2 7629 chr2R 24147051 intron Dat + chr2R 24150866 intron Dat + chr2R 24154680 intron Dat + chr2R_12_24150001 chr2R_24150001 RAL-340_100b 1515 chr2R 24162767 24162775 chr2R 24163239 24163247 5 472 17.5 7.5 12.5 0.4 480 chr2R 24162767 intron CG3328 + chr2R 24163007 intron CG3328 + chr2R 24163247 intron CG3328 + chr2R_5_24160001 chr2R_24160001 RAL-340_100b 1516 chr2R 24162778 24162813 chr2R 24163236 24163285 23 462 8.0 7.0 7.5 2.7 507 chr2R 24162778 intron CG3328 + chr2R 24163032 intron CG3328 + chr2R 24163285 intron CG3328 + chr2R_23_24160001 chr2R_24160001 RAL-340_100b 1517 chr2R 24177209 24177258 chr2R 24184719 24184768 412 28 7509 9.5 8.5 9.0 2.8 7559 chr2R 24177209 3` UTR Nop60B + chr2R 24180988 intron Nop60B + chr2R 24184768 3` UTR Nop60B + chr2R_28_24180001 chr2R_24180001 RAL-340_100b 1518 chr2R 24228371 24228379 chr2R 24228477 24228478 5 104 49.5 11.0 30.2 0.2 107 chr2R 24228371 intron CG30419 - chr2R 24228424 intron CG30419 - chr2R 24228478 intron CG30419 - chr2R_5_24225001 chr2R_24225001 RAL-340_100b 1519 chr2R 24228391 24228409 chr2R 24228474 24228515 7 90 31.0 10.0 20.5 0.3 124 chr2R 24228391 intron CG30419 - chr2R 24228453 intron CG30419 - chr2R 24228515 intron CG30419 - chr2R_7_24225001 chr2R_24225001 RAL-340_100b 1520 chr2R 24228411 24228430 chr2R 24228476 24228534 8 76 13.5 11.0 12.2 0.6 123 chr2R 24228411 intron CG30419 - chr2R 24228472 intron CG30419 - chr2R 24228534 intron CG30419 - chr2R_8_24225001 chr2R_24225001 RAL-340_100b 1521 chr2R 24274801 24274862 chr2R 24274903 24274973 8 104 2.0 0.5 1.2 3.6 172 chr2R 24274801 intergenic not near genes chr2R 24274887 intergenic not near genes chr2R 24274973 intergenic not near genes chr2R_8_24270001 chr2R_24270001 RAL-340_100b 1522 chr2R 24353405 24353461 chr2R 24361792 24361796 roo 23 8378 3.5 13.0 8.2 2.5 8391 chr2R 24353405 intron,intron bs +,CR44811 - chr2R 24357600 intron,intron bs +,CR44811 - chr2R 24361796 intron,intron bs +,CR44811 - chr2R_23_24355001 chr2R_24355001 RAL-340_100b 1523 chr2R 24415542 24415564 chr2R 24415858 24415880 8 313 18.0 23.5 20.8 0.4 338 chr2R 24415542 3` UTR prom - chr2R 24415711 intron prom - chr2R 24415880 intron prom - chr2R_8_24415001 chr2R_24415001 RAL-340_100b 1524 chr2R 24415566 24415570 chr2R 24415882 24415886 4 316 16.5 36.5 26.5 0.1 320 chr2R 24415566 3` UTR prom - chr2R 24415726 intron prom - chr2R 24415886 intron prom - chr2R_4_24415001 chr2R_24415001 RAL-340_100b 1525 chr2R 24415572 24415573 chr2R 24415877 24415889 4 312 13.5 31.5 22.5 0.2 317 chr2R 24415572 exon prom - chr2R 24415730 intron prom - chr2R 24415889 intron prom - chr2R_4_24415001 chr2R_24415001 RAL-340_100b 1526 chr2R 24415575 24415579 chr2R 24415860 24415895 4 308 11.5 24.5 18.0 0.2 320 chr2R 24415575 exon prom - chr2R 24415735 intron prom - chr2R 24415895 exon prom - chr2R_4_24415001 chr2R_24415001 RAL-340_100b 1527 chr2R 24437153 24437208 chr2R 24437265 24437322 38 108 7.0 12.5 9.8 3.5 169 chr2R 24437153 intergenic not near genes chr2R 24437238 intergenic not near genes chr2R 24437322 intergenic not near genes chr2R_38_24435001 chr2R_24435001 RAL-340_100b 1528 chr2R 24476291 24476347 chr2R 24476833 24476882 33 533 10.5 10.5 10.5 2.9 591 chr2R 24476291 intron CG13579 + chr2R 24476586 intron CG13579 + chr2R 24476882 intron CG13579 + chr2R_33_24475001 chr2R_24475001 RAL-340_100b 1529 chr2R 24493069 24493074 chr2R 24493183 24493188 5 114 10.5 7.0 8.8 0.5 119 chr2R 24493069 intergenic CG13590 -,CG13589 - chr2R 24493128 intergenic CG13590 -,CG13589 - chr2R 24493188 intergenic CG13590 -,CG13589 - chr2R_5_24490001 chr2R_24490001 RAL-340_100b 1530 chr2R 24493076 24493119 chr2R 24493179 24493230 10 111 0.0 7.0 3.5 2.2 154 chr2R 24493076 intergenic CG13590 -,CG13589 - chr2R 24493153 intergenic CG13590 -,CG13589 - chr2R 24493230 intergenic CG13590 -,CG13589 - chr2R_10_24490001 chr2R_24490001 RAL-340_100b 1531 chr2R 24590083 24590145 chr2R 24590205 24590261 20 125 0.0 8.0 4.0 4.0 178 chr2R 24590083 intron pio + chr2R 24590172 intron pio + chr2R 24590261 intron pio + chr2R_20_24590001 chr2R_24590001 RAL-340_100b 1532 chr2R 24636886 24636893 chr2R 24636997 24637004 6 111 12.5 0.0 6.2 0.8 118 chr2R 24636886 intron CG13594 - chr2R 24636945 intron CG13594 - chr2R 24637004 intron CG13594 - chr2R_6_24635001 chr2R_24635001 RAL-340_100b 1533 chr2R 24636894 24636909 chr2R 24636994 24637019 9 109 8.0 0.0 4.0 1.8 125 chr2R 24636894 intron CG13594 - chr2R 24636956 intron CG13594 - chr2R 24637019 intron CG13594 - chr2R_9_24635001 chr2R_24635001 RAL-340_100b 1534 chr2R 24647564 24647616 chr2R 24655146 24655198 412 38 7578 17.0 14.5 15.8 2.3 7634 chr2R 24647564 intergenic not near genes chr2R 24651381 intergenic not near genes chr2R 24655198 intergenic not near genes chr2R_38_24650001 chr2R_24650001 RAL-340_100b 1535 chr2R 24688934 24688979 chr2R 24689042 24689086 12 102 7.5 3.5 5.5 1.8 152 chr2R 24688934 intergenic not near genes chr2R 24689010 intergenic not near genes chr2R 24689086 intergenic not near genes chr2R_12_24685001 chr2R_24685001 RAL-340_100b 1536 chr2R 24727864 24727914 chr2R 24735397 24735447 mdg1 20 7526 6.5 16.5 11.5 1.6 7583 chr2R 24727864 intron Mid1 - chr2R 24731656 intron Mid1 - chr2R 24735447 intron Mid1 - chr2R_20_24730001 chr2R_24730001 RAL-340_100b 1537 chr2R 24738441 24738472 chr2R 24738574 24738605 13 130 4.0 14.0 9.0 1.3 164 chr2R 24738441 intergenic CR44828 - chr2R 24738523 intergenic CR44828 - chr2R 24738605 intergenic CR44828 - chr2R_13_24735001 chr2R_24735001 RAL-340_100b 1538 chr2R 24763586 24763592 chr2R 24765587 24765587 G2 5 2000 56.0 17.5 36.8 0.1 2001 chr2R 24763586 exon CG3894 + chr2R 24764586 intron CG3894 + chr2R 24765587 intron CG3894 + chr2R_5_24760001 chr2R_24760001 RAL-340_100b 1539 chr2R 24763595 24763633 chr2R 24765586 24765598 G2 39 1998 24.0 17.0 20.5 1.8 2003 chr2R 24763595 exon CG3894 + chr2R 24764596 intron CG3894 + chr2R 24765598 exon CG3894 + chr2R_39_24760001 chr2R_24760001 RAL-340_100b 1540 chr2R 24763635 24763644 chr2R 24765584 24765644 G2 11 1992 16.5 16.0 16.2 0.6 2009 chr2R 24763635 exon CG3894 + chr2R 24764640 intron CG3894 + chr2R 24765644 exon CG3894 + chr2R_11_24760001 chr2R_24760001 RAL-340_100b 1541 chr2R 24861697 24861733 chr2R 24861808 24861829 16 107 8.0 10.5 9.2 1.6 132 chr2R 24861697 intergenic not near genes chr2R 24861763 intergenic not near genes chr2R 24861829 intergenic not near genes chr2R_16_24860001 chr2R_24860001 RAL-340_100b 1542 chr2R 24880741 24880781 chr2R 24880832 24880870 27 102 7.5 5.0 6.2 3.8 129 chr2R 24880741 3` UTR CG44247 + chr2R 24880806 3` UTR CG44247 + chr2R 24880870 3` UTR CG44247 + chr2R_27_24880001 chr2R_24880001 RAL-340_100b 1543 chr2R 24927819 24927876 chr2R 24927926 24927984 28 104 5.5 6.5 6.0 4.0 165 chr2R 24927819 intron pain - chr2R 24927902 intron pain - chr2R 24927984 intron pain - chr2R_28_24925001 chr2R_24925001 RAL-340_100b 1544 chr2R 25022615 25022670 chr2R 25022724 25022766 12 101 7.0 7.0 7.0 1.5 151 chr2R 25022615 intron uzip + chr2R 25022690 intron uzip + chr2R 25022766 intron uzip + chr2R_12_25020001 chr2R_25020001 RAL-340_100b 1545 chr2R 25097856 25097884 chr2R 25097979 25098007 33 122 18.0 27.5 22.8 1.4 151 chr2R 25097856 intron lov - chr2R 25097932 intron lov - chr2R 25098007 intron lov - chr2R_33_25095001 chr2R_25095001 RAL-340_100b 1546 chr2R 25141637 25141681 chr2R 25159341 25159396 roo 19 17711 8.5 12.0 10.2 1.7 17759 chr2R 25141637 intergenic not near genes chr2R 25150516 intergenic not near genes chr2R 25159396 intergenic not near genes chr2R_19_25150001 chr2R_25150001 RAL-340_100b 1547 chr2R 25193315 25193369 chr2R 25193482 25193538 23 160 6.5 6.5 6.5 3.1 223 chr2R 25193315 intron CG9380 - chr2R 25193426 intron CG9380 - chr2R 25193538 intron CG9380 - chr2R_23_25190001 chr2R_25190001 RAL-340_100b 1548 chr2R 25234739 25234799 chr2R 25234844 25234861 33 100 5.0 2.5 3.8 6.9 122 chr2R 25234739 intron CG9380 - chr2R 25234800 intron CG9380 - chr2R 25234861 intron CG9380 - chr2R_33_25230001 chr2R_25230001 RAL-340_100b 1549 chr2R 25253420 25253475 chr2R 25253521 25253577 27 99 10.5 14.0 12.2 2.0 157 chr2R 25253420 intron,intron CG9380 -,CG30428 + chr2R 25253498 intron,intron CG9380 -,CG30428 + chr2R 25253577 intron,intron CG9380 -,CG30428 + chr2R_27_25250001 chr2R_25250001 RAL-340_100b 1550 chr3L 51362 51415 chr3L 51485 51538 17 119 7.0 13.0 10.0 1.5 176 chr3L 51362 intergenic not near genes chr3L 51450 intergenic not near genes chr3L 51538 intergenic not near genes chr3L_17_50001 chr3L_50001 RAL-340_100b 1551 chr3L 88694 88748 chr3L 88797 88849 45 100 6.5 7.5 7.0 5.6 155 chr3L 88694 intergenic not near genes chr3L 88772 intergenic not near genes chr3L 88849 intergenic not near genes chr3L_45_85001 chr3L_85001 RAL-340_100b 1552 chr3L 93850 93853 chr3L 21448026 21448026 5 21354174 37.0 37.0 37.0 0.1 21354176 chr3L 93850 intergenic not near genes chr3L 10770938 intergenic not near genes chr3L 21448026 3` UTR Syx7 + chr3L_5_10770001 chr3L_10770001 RAL-340_100b 1553 chr3L 94360 94421 chr3L 94500 94530 16 137 7.0 5.0 6.0 2.3 170 chr3L 94360 intergenic not near genes chr3L 94445 intergenic not near genes chr3L 94530 intergenic not near genes chr3L_16_90001 chr3L_90001 RAL-340_100b 1554 chr3L 110186 110244 chr3L 119378 119427 roo 18 9187 8.0 15.0 11.5 1.4 9241 chr3L 110186 intergenic not near genes chr3L 114806 intergenic not near genes chr3L 119427 intergenic not near genes chr3L_18_110001 chr3L_110001 RAL-340_100b 1555 chr3L 155757 155814 chr3L 155859 155916 16 97 5.5 11.5 8.5 1.7 159 chr3L 155757 intron p130CAS + chr3L 155836 intron p130CAS + chr3L 155916 intron p130CAS + chr3L_16_155001 chr3L_155001 RAL-340_100b 1556 chr3L 338792 338802 chr3L 338911 338921 6 118 21.5 17.0 19.2 0.3 129 chr3L 338792 intron,intron Ptpmeg +,mthl10 - chr3L 338856 intron,intron Ptpmeg +,mthl10 - chr3L 338921 intron,intron Ptpmeg +,mthl10 - chr3L_6_335001 chr3L_335001 RAL-340_100b 1557 chr3L 338812 338839 chr3L 338926 338958 15 115 11.0 22.0 16.5 0.9 146 chr3L 338812 intron,intron Ptpmeg +,mthl10 - chr3L 338885 intron,intron Ptpmeg +,mthl10 - chr3L 338958 intron,intron Ptpmeg +,mthl10 - chr3L_15_335001 chr3L_335001 RAL-340_100b 1558 chr3L 402664 402674 chr3L 409742 409749 297 9 7076 49.0 13.5 31.2 0.3 7085 chr3L 402664 intergenic not near genes chr3L 406206 intergenic not near genes chr3L 409749 intergenic not near genes chr3L_9_405001 chr3L_405001 RAL-340_100b 1559 chr3L 402675 402718 chr3L 409740 409766 297 32 7070 21.5 13.0 17.2 1.8 7091 chr3L 402675 intergenic not near genes chr3L 406220 intergenic not near genes chr3L 409766 intergenic not near genes chr3L_32_405001 chr3L_405001 RAL-340_100b 1560 chr3L 421034 421081 chr3L 421155 421202 15 119 9.0 6.0 7.5 1.8 168 chr3L 421034 intergenic not near genes chr3L 421118 intergenic not near genes chr3L 421202 intergenic not near genes chr3L_15_420001 chr3L_420001 RAL-340_100b 1561 chr3L 428163 428220 chr3L 428309 428323 10 137 5.5 0.5 3.0 2.5 160 chr3L 428163 intergenic not near genes chr3L 428243 intergenic not near genes chr3L 428323 intergenic not near genes chr3L_10_425001 chr3L_425001 RAL-340_100b 1562 chr3L 485152 485154 chr3L 3475989 3475995 4 2990839 33.5 11.0 22.2 0.2 2990843 chr3L 485152 intron klar - chr3L 1980574 intergenic not near genes chr3L 3475995 intron CG42324 + chr3L_4_1980001 chr3L_1980001 RAL-340_100b 1563 chr3L 494589 494594 chr3L 494678 494701 5 101 11.5 0.0 5.8 0.7 112 chr3L 494589 intron klar - chr3L 494645 intron klar - chr3L 494701 intron klar - chr3L_5_490001 chr3L_490001 RAL-340_100b 1564 chr3L 494595 494621 chr3L 494672 494708 11 97 7.5 0.5 4.0 2.2 113 chr3L 494595 intron klar - chr3L 494652 intron klar - chr3L 494708 intron klar - chr3L_11_490001 chr3L_490001 RAL-340_100b 1565 chr3L 514253 514302 chr3L 514355 514404 21 102 11.5 7.5 9.5 2.0 151 chr3L 514253 intron klar - chr3L 514328 intron klar - chr3L 514404 intron klar - chr3L_21_510001 chr3L_510001 RAL-340_100b 1566 chr3L 563967 564001 chr3L 564148 564205 16 196 4.0 9.5 6.8 2.1 238 chr3L 563967 intron hipk + chr3L 564086 intron hipk + chr3L 564205 intron hipk + chr3L_16_560001 chr3L_560001 RAL-340_100b 1567 chr3L 617669 617712 chr3L 617800 617843 17 124 5.5 6.5 6.0 2.4 174 chr3L 617669 intergenic not near genes chr3L 617756 intergenic not near genes chr3L 617843 intergenic not near genes chr3L_17_615001 chr3L_615001 RAL-340_100b 1568 chr3L 665842 665882 chr3L 665950 665990 10 101 15.5 9.5 12.5 0.7 148 chr3L 665842 intergenic not near genes chr3L 665916 intergenic not near genes chr3L 665990 intergenic not near genes chr3L_10_665001 chr3L_665001 RAL-340_100b 1569 chr3L 668811 668818 chr3L 668924 668949 8 125 32.0 7.5 19.8 0.4 138 chr3L 668811 intergenic not near genes chr3L 668880 intergenic not near genes chr3L 668949 intergenic not near genes chr3L_8_665001 chr3L_665001 RAL-340_100b 1570 chr3L 668822 668828 chr3L 668921 668959 10 119 27.0 7.5 17.2 0.5 137 chr3L 668822 intergenic not near genes chr3L 668890 intergenic not near genes chr3L 668959 intergenic not near genes chr3L_10_665001 chr3L_665001 RAL-340_100b 1571 chr3L 668830 668847 chr3L 668920 668947 9 119 14.0 6.5 10.2 0.8 117 chr3L 668830 intergenic not near genes chr3L 668888 intergenic not near genes chr3L 668947 intergenic not near genes chr3L_9_665001 chr3L_665001 RAL-340_100b 1572 chr3L 767797 767851 chr3L 767910 767963 33 111 5.0 4.5 4.8 5.7 166 chr3L 767797 intergenic not near genes chr3L 767880 intergenic not near genes chr3L 767963 intergenic not near genes chr3L_33_765001 chr3L_765001 RAL-340_100b 1573 chr3L 789892 789902 chr3L 790402 790406 roo 6 509 13.0 8.0 10.5 0.5 514 chr3L 789892 intergenic not near genes chr3L 790149 intergenic not near genes chr3L 790406 intergenic not near genes chr3L_6_790001 chr3L_790001 RAL-340_100b 1574 chr3L 789903 789946 chr3L 790397 790456 roo 14 504 6.5 7.0 6.8 1.8 553 chr3L 789903 intergenic not near genes chr3L 790180 intergenic not near genes chr3L 790456 intergenic not near genes chr3L_14_790001 chr3L_790001 RAL-340_100b 1575 chr3L 857975 858030 chr3L 866481 866490 Tirant 13 8496 5.0 9.5 7.2 1.6 8515 chr3L 857975 intergenic not near genes chr3L 862232 intergenic not near genes chr3L 866490 intergenic CG12502 + chr3L_13_860001 chr3L_860001 RAL-340_100b 1576 chr3L 925161 925205 chr3L 932606 932656 mdg1 17 7447 4.5 11.5 8.0 1.9 7495 chr3L 925161 intron Glut1 + chr3L 928908 intron Glut1 + chr3L 932656 intron Glut1 + chr3L_17_925001 chr3L_925001 RAL-340_100b 1577 chr3L 939751 939778 chr3L 940897 940920 jockey 21 1145 21.0 11.0 16.0 1.2 1169 chr3L 939751 intron Glut1 + chr3L 940336 intron Glut1 + chr3L 940920 intron Glut1 + chr3L_21_940001 chr3L_940001 RAL-340_100b 1578 chr3L 939780 939798 chr3L 940893 940925 jockey 9 1132 22.0 10.0 16.0 0.5 1145 chr3L 939780 intron Glut1 + chr3L 940352 intron Glut1 + chr3L 940925 intron Glut1 + chr3L_9_940001 chr3L_940001 RAL-340_100b 1579 chr3L 960992 961041 chr3L 961110 961154 10 115 4.5 5.5 5.0 1.7 162 chr3L 960992 intron Glut1 + chr3L 961073 intron Glut1 + chr3L 961154 intron Glut1 + chr3L_10_960001 chr3L_960001 RAL-340_100b 1580 chr3L 1015110 1015166 chr3L 1015225 1015287 12 103 2.0 1.0 1.5 4.8 177 chr3L 1015110 intron trio - chr3L 1015198 intron trio - chr3L 1015287 intron trio - chr3L_12_1015001 chr3L_1015001 RAL-340_100b 1581 chr3L 1031588 1031614 chr3L 1031653 1031680 8 77 7.0 5.0 6.0 1.1 92 chr3L 1031588 intron trio - chr3L 1031634 intron trio - chr3L 1031680 intron trio - chr3L_8_1030001 chr3L_1030001 RAL-340_100b 1582 chr3L 1047330 1047385 chr3L 1055163 1055182 412 12 7820 3.5 8.0 5.8 1.8 7852 chr3L 1047330 intron bab1 - chr3L 1051256 intron bab1 - chr3L 1055182 intron bab1 - chr3L_12_1050001 chr3L_1050001 RAL-340_100b 1583 chr3L 1095019 1095049 chr3L 1095100 1095146 13 90 10.0 12.0 11.0 1.1 127 chr3L 1095019 intron bab1 - chr3L 1095082 intron bab1 - chr3L 1095146 intron bab1 - chr3L_13_1095001 chr3L_1095001 RAL-340_100b 1584 chr3L 1103970 1104013 chr3L 1104186 1104229 25 213 12.0 12.5 12.2 1.9 259 chr3L 1103970 intergenic not near genes chr3L 1104100 intergenic not near genes chr3L 1104229 intergenic not near genes chr3L_25_1100001 chr3L_1100001 RAL-340_100b 1585 chr3L 1114972 1115024 chr3L 1115082 1115129 18 106 4.5 8.5 6.5 2.4 157 chr3L 1114972 intergenic not near genes chr3L 1115050 intergenic not near genes chr3L 1115129 intergenic not near genes chr3L_18_1115001 chr3L_1115001 RAL-340_100b 1586 chr3L 1145215 1145268 chr3L 1145319 1145330 27 98 11.0 0.5 5.8 4.0 115 chr3L 1145215 intron bab2 - chr3L 1145272 intron bab2 - chr3L 1145330 intron bab2 - chr3L_27_1145001 chr3L_1145001 RAL-340_100b 1587 chr3L 1154119 1154138 chr3L 1163288 1163313 roo 19 9171 12.5 7.5 10.0 1.7 9194 chr3L 1154119 intron bab2 - chr3L 1158716 intron bab2 - chr3L 1163313 intron bab2 - chr3L_19_1155001 chr3L_1155001 RAL-340_100b 1588 chr3L 1154147 1154161 chr3L 1163278 1163336 roo 12 9162 6.0 5.0 5.5 1.8 9189 chr3L 1154147 intron bab2 - chr3L 1158742 intron bab2 - chr3L 1163336 intron bab2 - chr3L_12_1155001 chr3L_1155001 RAL-340_100b 1589 chr3L 1167000 1167010 chr3L 1167102 1167112 9 102 7.0 12.5 9.8 0.8 112 chr3L 1167000 intron bab2 - chr3L 1167056 intron bab2 - chr3L 1167112 intron bab2 - chr3L_9_1165001 chr3L_1165001 RAL-340_100b 1590 chr3L 1219569 1219620 chr3L 1227327 1227378 412 20 7749 8.5 11.0 9.8 1.9 7809 chr3L 1219569 intron mwh + chr3L 1223474 intron mwh + chr3L 1227378 intron mwh + chr3L_20_1220001 chr3L_1220001 RAL-340_100b 1591 chr3L 1236215 1236230 chr3L 1236317 1236319 12 98 12.0 0.0 6.0 1.7 104 chr3L 1236215 intron CG9194 + chr3L 1236267 intron CG9194 + chr3L 1236319 intron CG9194 + chr3L_12_1235001 chr3L_1235001 RAL-340_100b 1592 chr3L 1260118 1260152 chr3L 1260223 1260257 16 104 14.5 8.5 11.5 1.3 139 chr3L 1260118 intron CG9134 + chr3L 1260188 intron CG9134 + chr3L 1260257 intron CG9134 + chr3L_16_1260001 chr3L_1260001 RAL-340_100b 1593 chr3L 1260157 1260164 chr3L 1260222 1260247 6 89 9.0 8.5 8.8 0.6 90 chr3L 1260157 intron CG9134 + chr3L 1260202 intron CG9134 + chr3L 1260247 intron CG9134 + chr3L_6_1260001 chr3L_1260001 RAL-340_100b 1594 chr3L 1268128 1268171 chr3L 1268340 1268341 12 203 10.0 0.0 5.0 2.0 213 chr3L 1268128 intron CG9134 + chr3L 1268234 intron CG9134 + chr3L 1268341 intron CG9134 + chr3L_12_1265001 chr3L_1265001 RAL-340_100b 1595 chr3L 1315005 1315008 chr3L 1315105 1315108 5 101 55.0 40.0 47.5 0.1 103 chr3L 1315005 exon CG9153 + chr3L 1315056 exon CG9153 + chr3L 1315108 exon CG9153 + chr3L_5_1315001 chr3L_1315001 RAL-340_100b 1596 chr3L 1315019 1315020 chr3L 1315112 1315113 4 96 48.5 42.5 45.5 0.1 94 chr3L 1315019 exon CG9153 + chr3L 1315066 exon CG9153 + chr3L 1315113 exon CG9153 + chr3L_4_1315001 chr3L_1315001 RAL-340_100b 1597 chr3L 1315026 1315052 chr3L 1315098 1315155 10 97 42.5 40.5 41.5 0.2 129 chr3L 1315026 exon CG9153 + chr3L 1315090 exon CG9153 + chr3L 1315155 exon CG9153 + chr3L_10_1315001 chr3L_1315001 RAL-340_100b 1598 chr3L 1310989 1310993 chr3L 1315824 1315831 4 4836 92.5 63.5 78.0 0.1 4842 chr3L 1310989 exon CG2469 + chr3L 1313410 intergenic CG9186 -,CG9153 + chr3L 1315831 exon CG9153 + chr3L_4_1310001 chr3L_1310001 RAL-340_100b 1599 chr3L 1310981 1311038 chr3L 1315832 1315873 36 4845 106.5 61.0 83.8 0.4 4892 chr3L 1310981 exon CG2469 + chr3L 1313427 intergenic CG9186 -,CG9153 + chr3L 1315873 exon CG9153 + chr3L_36_1310001 chr3L_1310001 RAL-340_100b 1600 chr3L 1356998 1357006 chr3L 1357099 1357103 4 100 19.0 28.0 23.5 0.2 105 chr3L 1356998 intron Ptp61F - chr3L 1357050 intron Ptp61F - chr3L 1357103 intron Ptp61F - chr3L_4_1355001 chr3L_1355001 RAL-340_100b 1601 chr3L 1374412 1374420 chr3L 1374514 1374522 5 102 59.5 11.5 35.5 0.1 110 chr3L 1374412 intron,intron Ptp61F -,ru + chr3L 1374467 intron,intron Ptp61F -,ru + chr3L 1374522 intron,intron Ptp61F -,ru + chr3L_5_1370001 chr3L_1370001 RAL-340_100b 1602 chr3L 1385151 1385208 chr3L 1385264 1385321 24 112 2.0 5.0 3.5 5.3 170 chr3L 1385151 intron,intron Ptp61F -,ru + chr3L 1385236 intron,intron Ptp61F -,ru + chr3L 1385321 intron,intron Ptp61F -,ru + chr3L_24_1385001 chr3L_1385001 RAL-340_100b 1603 chr3L 1424759 1424773 chr3L 1430022 1430027 Rt1a 4 5262 16.0 25.5 20.8 0.2 5268 chr3L 1424759 intron Ptp61F - chr3L 1427393 intron Ptp61F - chr3L 1430027 intron Ptp61F - chr3L_4_1425001 chr3L_1425001 RAL-340_100b 1604 chr3L 1463400 1463407 chr3L 1463503 1463513 6 106 8.0 12.5 10.2 0.5 113 chr3L 1463400 intron Ptp61F - chr3L 1463456 intron Ptp61F - chr3L 1463513 intron Ptp61F - chr3L_6_1460001 chr3L_1460001 RAL-340_100b 1605 chr3L 1463408 1463446 chr3L 1463499 1463537 20 98 7.0 9.0 8.0 2.2 129 chr3L 1463408 intron Ptp61F - chr3L 1463472 intron Ptp61F - chr3L 1463537 intron Ptp61F - chr3L_20_1460001 chr3L_1460001 RAL-340_100b 1606 chr3L 1485740 1485743 chr3L 1486914 1486933 1360 5 1184 24.5 69.5 47.0 0.1 1193 chr3L 1485740 intron stet - chr3L 1486336 intron stet - chr3L 1486933 intron stet - chr3L_5_1485001 chr3L_1485001 RAL-340_100b 1607 chr3L 1501973 1501976 chr3L 1502079 1502082 4 106 7.0 11.5 9.2 0.4 109 chr3L 1501973 intron pUf68 - chr3L 1502028 intron pUf68 - chr3L 1502082 intron pUf68 - chr3L_4_1500001 chr3L_1500001 RAL-340_100b 1608 chr3L 1501986 1502021 chr3L 1502077 1502127 18 98 7.0 10.0 8.5 1.9 141 chr3L 1501986 intron pUf68 - chr3L 1502056 intron pUf68 - chr3L 1502127 intron pUf68 - chr3L_18_1500001 chr3L_1500001 RAL-340_100b 1609 chr3L 1505975 1506031 chr3L 1513597 1513600 17.6 12 7616 9.5 7.0 8.2 1.3 7625 chr3L 1505975 intron,intron Psa +,cue - chr3L 1509788 intron,intron Psa +,cue - chr3L 1513600 intron,intron Psa +,cue - chr3L_12_1505001 chr3L_1505001 RAL-340_100b 1610 chr3L 1536854 1536883 chr3L 1536947 1536982 9 106 7.0 6.0 6.5 1.2 128 chr3L 1536854 intergenic CG12091 -,CG7852 + chr3L 1536918 intergenic CG12091 -,CG7852 + chr3L 1536982 intergenic CG12091 -,CG7852 + chr3L_9_1535001 chr3L_1535001 RAL-340_100b 1611 chr3L 1571446 1571489 chr3L 1571556 1571599 22 109 9.5 9.5 9.5 2.1 153 chr3L 1571446 intron CG12004 + chr3L 1571522 intron CG12004 + chr3L 1571599 intron CG12004 + chr3L_22_1570001 chr3L_1570001 RAL-340_100b 1612 chr3L 1584115 1584122 chr3L 1584222 1584229 6 107 0.0 15.5 7.8 0.7 114 chr3L 1584115 intron CG13917 + chr3L 1584172 intron CG13917 + chr3L 1584229 intron CG13917 + chr3L_6_1580001 chr3L_1580001 RAL-340_100b 1613 chr3L 1633817 1633853 chr3L 1633931 1633954 21 112 16.0 12.0 14.0 1.4 137 chr3L 1633817 intron nSyb - chr3L 1633886 intron nSyb - chr3L 1633954 intron nSyb - chr3L_21_1630001 chr3L_1630001 RAL-340_100b 1614 chr3L 1728493 1728552 chr3L 1728603 1728662 34 104 20.0 6.0 13.0 2.4 169 chr3L 1728493 intron drpr - chr3L 1728578 intron drpr - chr3L 1728662 intron drpr - chr3L_34_1725001 chr3L_1725001 RAL-340_100b 1615 chr3L 1740850 1740883 chr3L 1741107 1741150 pogo 5 262 7.5 7.5 7.5 0.6 300 chr3L 1740850 intron Gk + chr3L 1741000 intron Gk + chr3L 1741150 intron Gk + chr3L_5_1740001 chr3L_1740001 RAL-340_100b 1616 chr3L 1805674 1805711 chr3L 1805873 1805910 30 196 30.0 9.5 19.8 1.4 236 chr3L 1805674 exon CG42676 + chr3L 1805792 intron CG42676 + chr3L 1805910 intron CG42676 + chr3L_30_1805001 chr3L_1805001 RAL-340_100b 1617 chr3L 1821615 1821648 chr3L 1821719 1821755 15 105 9.0 5.5 7.2 1.8 140 chr3L 1821615 intron GV1 + chr3L 1821685 intron GV1 + chr3L 1821755 intron GV1 + chr3L_15_1820001 chr3L_1820001 RAL-340_100b 1618 chr3L 1826758 1826806 chr3L 1827107 1827164 20 348 10.5 10.0 10.2 1.8 406 chr3L 1826758 intron Cpr62Ba - chr3L 1826961 intron Cpr62Ba - chr3L 1827164 intron Cpr62Ba - chr3L_20_1825001 chr3L_1825001 RAL-340_100b 1619 chr3L 1853020 1853055 chr3L 1853129 1853164 5 108 3.5 1.5 2.5 1.4 144 chr3L 1853020 intron CG13936 - chr3L 1853092 intron CG13936 - chr3L 1853164 intron CG13936 - chr3L_5_1850001 chr3L_1850001 RAL-340_100b 1620 chr3L 1882343 1882376 chr3L 1882464 1882495 11 119 11.5 2.0 6.8 1.4 152 chr3L 1882343 intron CG13937 - chr3L 1882419 intron CG13937 - chr3L 1882495 intron CG13937 - chr3L_11_1880001 chr3L_1880001 RAL-340_100b 1621 chr3L 1922442 1922463 chr3L 1922538 1922546 9 95 26.5 22.0 24.2 0.4 104 chr3L 1922442 intron Dbx + chr3L 1922494 intron Dbx + chr3L 1922546 intron Dbx + chr3L_9_1920001 chr3L_1920001 RAL-340_100b 1622 chr3L 1988827 1988874 chr3L 1989031 1989066 27 201 3.0 10.5 6.8 3.5 239 chr3L 1988827 intergenic not near genes chr3L 1988946 intergenic not near genes chr3L 1989066 intergenic not near genes chr3L_27_1985001 chr3L_1985001 RAL-340_100b 1623 chr3L 2035118 2035306 chr3L 2035298 2035408 9 110 0.0 0.0 0.0 9.0 290 chr3L 2035118 intergenic not near genes chr3L 2035263 intergenic not near genes chr3L 2035408 intergenic not near genes chr3L_9_2035001 chr3L_2035001 RAL-340_100b 1624 chr3L 2035531 2035568 chr3L 2037921 2037974 31 2394 68.5 58.5 63.5 0.5 2443 chr3L 2035531 intergenic not near genes chr3L 2036752 intergenic not near genes chr3L 2037974 exon CG42355 - chr3L_31_2035001 chr3L_2035001 RAL-340_100b 1625 chr3L 2108230 2108249 chr3L 2113459 2113477 copia 11 5227 8.5 9.5 9.0 1.1 5247 chr3L 2108230 intron sls - chr3L 2110854 intron sls - chr3L 2113477 intron sls - chr3L_11_2110001 chr3L_2110001 RAL-340_100b 1626 chr3L 2108250 2108282 chr3L 2113456 2113511 copia 24 5226 3.0 9.5 6.2 3.3 5261 chr3L 2108250 intron sls - chr3L 2110880 intron sls - chr3L 2113511 intron sls - chr3L_24_2110001 chr3L_2110001 RAL-340_100b 1627 chr3L 2139184 2139227 chr3L 2139290 2139322 12 103 11.0 3.5 7.2 1.5 138 chr3L 2139184 intron zormin - chr3L 2139253 intron zormin - chr3L 2139322 intron zormin - chr3L_12_2135001 chr3L_2135001 RAL-340_100b 1628 chr3L 2168767 2168803 chr3L 2168866 2168902 14 110 5.5 6.0 5.8 2.1 135 chr3L 2168767 exon CG15879 - chr3L 2168834 intron CG15879 - chr3L 2168902 intron CG15879 - chr3L_14_2165001 chr3L_2165001 RAL-340_100b 1629 chr3L 2199786 2199821 chr3L 2199887 2199922 13 99 2.5 5.5 4.0 2.6 136 chr3L 2199786 intergenic not near genes chr3L 2199854 intergenic not near genes chr3L 2199922 intergenic not near genes chr3L_13_2195001 chr3L_2195001 RAL-340_100b 1630 chr3L 2279011 2279069 chr3L 2279187 2279240 13 169 0.5 9.0 4.8 2.2 229 chr3L 2279011 intergenic not near genes chr3L 2279126 intergenic not near genes chr3L 2279240 intergenic not near genes chr3L_13_2275001 chr3L_2275001 RAL-340_100b 1631 chr3L 2282965 2283024 chr3L 2283066 2283125 13 100 5.0 6.0 5.5 2.0 160 chr3L 2282965 5` UTR MsR2 + chr3L 2283045 5` UTR MsR2 + chr3L 2283125 5` UTR MsR2 + chr3L_13_2280001 chr3L_2280001 RAL-340_100b 1632 chr3L 2307978 2308033 chr3L 2308109 2308164 15 129 7.5 8.5 8.0 1.7 186 chr3L 2307978 intergenic not near genes chr3L 2308071 intergenic not near genes chr3L 2308164 intergenic not near genes chr3L_15_2305001 chr3L_2305001 RAL-340_100b 1633 chr3L 2321132 2321188 chr3L 2321234 2321283 17 99 7.5 6.5 7.0 2.1 151 chr3L 2321132 intergenic not near genes chr3L 2321208 intergenic not near genes chr3L 2321283 intergenic not near genes chr3L_17_2320001 chr3L_2320001 RAL-340_100b 1634 chr3L 2331560 2331563 chr3L 2331662 2331665 6 102 18.0 8.0 13.0 0.4 105 chr3L 2331560 intron MsR1 + chr3L 2331612 intron MsR1 + chr3L 2331665 intron MsR1 + chr3L_6_2330001 chr3L_2330001 RAL-340_100b 1635 chr3L 2331564 2331612 chr3L 2331661 2331712 42 98 6.0 8.0 7.0 5.2 148 chr3L 2331564 intron MsR1 + chr3L 2331638 intron MsR1 + chr3L 2331712 intron MsR1 + chr3L_42_2330001 chr3L_2330001 RAL-340_100b 1636 chr3L 2411316 2411341 chr3L 2411421 2411446 16 104 7.0 9.0 8.0 1.8 130 chr3L 2411316 intron CG45186 + chr3L 2411381 intron CG45186 + chr3L 2411446 intron CG45186 + chr3L_16_2410001 chr3L_2410001 RAL-340_100b 1637 chr3L 2432457 2432468 chr3L 2432801 2432803 7 341 13.5 8.0 10.8 0.6 346 chr3L 2432457 intron CG45186 + chr3L 2432630 intron CG45186 + chr3L 2432803 intron CG45186 + chr3L_7_2430001 chr3L_2430001 RAL-340_100b 1638 chr3L 2432477 2432497 chr3L 2432795 2432841 11 331 7.0 5.5 6.2 1.5 364 chr3L 2432477 intron CG45186 + chr3L 2432659 intron CG45186 + chr3L 2432841 intron CG45186 + chr3L_11_2430001 chr3L_2430001 RAL-340_100b 1639 chr3L 2447480 2447506 chr3L 2456661 2456687 roo 15 9179 28.0 15.0 21.5 0.7 9207 chr3L 2447480 intron CG45186 + chr3L 2452084 intron CG45186 + chr3L 2456687 intron CG45186 + chr3L_15_2450001 chr3L_2450001 RAL-340_100b 1640 chr3L 2447513 2447534 chr3L 2456659 2456715 roo 16 9168 11.5 14.5 13.0 1.1 9202 chr3L 2447513 intron CG45186 + chr3L 2452114 intron CG45186 + chr3L 2456715 intron CG45186 + chr3L_16_2450001 chr3L_2450001 RAL-340_100b 1641 chr3L 2467428 2467487 chr3L 2467550 2467609 12 116 5.0 5.0 5.0 2.0 181 chr3L 2467428 intron CG45186 + chr3L 2467518 intron CG45186 + chr3L 2467609 intron CG45186 + chr3L_12_2465001 chr3L_2465001 RAL-340_100b 1642 chr3L 2479366 2479482 chr3L 2479469 2479600 12 116 0.5 0.5 0.5 8.0 234 chr3L 2479366 intron CG45186 + chr3L 2479483 intron CG45186 + chr3L 2479600 intron CG45186 + chr3L_12_2475001 chr3L_2475001 RAL-340_100b 1643 chr3L 2519673 2519719 chr3L 2519790 2519828 15 116 11.0 0.0 5.5 2.3 155 chr3L 2519673 intron Spn - chr3L 2519750 intron Spn - chr3L 2519828 intron Spn - chr3L_15_2515001 chr3L_2515001 RAL-340_100b 1644 chr3L 2533633 2533644 chr3L 2533740 2533751 6 106 27.0 25.0 26.0 0.2 118 chr3L 2533633 intron Spn - chr3L 2533692 intron Spn - chr3L 2533751 intron Spn - chr3L_6_2530001 chr3L_2530001 RAL-340_100b 1645 chr3L 2533658 2533679 chr3L 2533730 2533736 13 92 13.0 21.5 17.2 0.7 78 chr3L 2533658 intron Spn - chr3L 2533697 intron Spn - chr3L 2533736 intron Spn - chr3L_13_2530001 chr3L_2530001 RAL-340_100b 1646 chr3L 2534613 2534625 chr3L 2534721 2534733 14 107 0.0 27.5 13.8 0.9 120 chr3L 2534613 intron Spn - chr3L 2534673 intron Spn - chr3L 2534733 exon Spn - chr3L_14_2530001 chr3L_2530001 RAL-340_100b 1647 chr3L 2591691 2591744 chr3L 2591803 2591856 15 112 4.0 3.5 3.8 3.1 165 chr3L 2591691 intron dos + chr3L 2591774 intron dos + chr3L 2591856 intron dos + chr3L_15_2590001 chr3L_2590001 RAL-340_100b 1648 chr3L 2604605 2604656 chr3L 2604781 2604832 15 173 9.5 8.5 9.0 1.5 227 chr3L 2604605 intron Pxn - chr3L 2604718 intron Pxn - chr3L 2604832 intron Pxn - chr3L_15_2600001 chr3L_2600001 RAL-340_100b 1649 chr3L 2609654 2609677 chr3L 2609755 2609778 9 98 6.0 1.0 3.5 2.0 124 chr3L 2609654 intron Pxn - chr3L 2609716 intron Pxn - chr3L 2609778 intron Pxn - chr3L_9_2605001 chr3L_2605001 RAL-340_100b 1650 chr3L 2719510 2719557 chr3L 2719637 2719684 37 125 20.0 7.0 13.5 2.6 174 chr3L 2719510 3` UTR Mrtf - chr3L 2719597 3` UTR Mrtf - chr3L 2719684 3` UTR Mrtf - chr3L_37_2715001 chr3L_2715001 RAL-340_100b 1651 chr3L 2732997 2733016 chr3L 2733515 2733542 16 524 1.5 24.0 12.8 1.2 545 chr3L 2732997 intron Mrtf - chr3L 2733270 intron Mrtf - chr3L 2733542 intron Mrtf - chr3L_16_2730001 chr3L_2730001 RAL-340_100b 1652 chr3L 2751431 2751460 chr3L 2755751 2755780 F-element 4 4320 14.0 8.0 11.0 0.3 4349 chr3L 2751431 intron Mrtf - chr3L 2753606 intron Mrtf - chr3L 2755780 intron Mrtf - chr3L_4_2750001 chr3L_2750001 RAL-340_100b 1653 chr3L 2783615 2783669 chr3L 2783724 2783746 25 110 6.0 7.0 6.5 3.3 131 chr3L 2783615 intron pgant6 + chr3L 2783680 intron pgant6 + chr3L 2783746 exon pgant6 + chr3L_25_2780001 chr3L_2780001 RAL-340_100b 1654 chr3L 2795701 2795748 chr3L 2795849 2795871 14 143 5.0 9.0 7.0 1.8 170 chr3L 2795701 intron CG43444 - chr3L 2795786 intron CG43444 - chr3L 2795871 intron CG43444 - chr3L_14_2795001 chr3L_2795001 RAL-340_100b 1655 chr3L 2834729 2834786 chr3L 2834915 2834925 29 181 14.0 13.0 13.5 2.0 196 chr3L 2834729 intron CG43444 - chr3L 2834827 intron CG43444 - chr3L 2834925 intron CG43444 - chr3L_29_2830001 chr3L_2830001 RAL-340_100b 1656 chr3L 2854463 2854504 chr3L 2854565 2854607 13 93 4.5 7.5 6.0 1.9 144 chr3L 2854463 intron CG43444 - chr3L 2854535 intron CG43444 - chr3L 2854607 intron CG43444 - chr3L_13_2850001 chr3L_2850001 RAL-340_100b 1657 chr3L 2927814 2927846 chr3L 2936116 2936148 Tirant 29 8299 15.0 19.5 17.2 1.6 8334 chr3L 2927814 intron Shab + chr3L 2931981 intron Shab + chr3L 2936148 intron Shab + chr3L_29_2930001 chr3L_2930001 RAL-340_100b 1658 chr3L 2927849 2927867 chr3L 2936114 2936169 Tirant 21 8296 9.0 18.5 13.8 1.4 8320 chr3L 2927849 intron Shab + chr3L 2932009 intron Shab + chr3L 2936169 intron Shab + chr3L_21_2930001 chr3L_2930001 RAL-340_100b 1659 chr3L 2943844 2943844 chr3L 15253229 15253229 4 12309385 50.5 40.5 45.5 0.1 12309385 chr3L 2943844 intron Shab + chr3L 9098536 3` UTR bol - chr3L 15253229 intergenic not near genes chr3L_4_9095001 chr3L_9095001 RAL-340_100b 1660 chr3L 2966700 2966720 chr3L 2974150 2974170 mdg1 4 7450 15.0 0.0 7.5 0.5 7470 chr3L 2966700 intergenic not near genes chr3L 2970435 intergenic not near genes chr3L 2974170 intergenic not near genes chr3L_4_2970001 chr3L_2970001 RAL-340_100b 1661 chr3L 3028315 3028373 chr3L 3028419 3028459 10 98 6.5 3.0 4.8 1.7 144 chr3L 3028315 intergenic not near genes chr3L 3028387 intergenic not near genes chr3L 3028459 intergenic not near genes chr3L_10_3025001 chr3L_3025001 RAL-340_100b 1662 chr3L 3034340 3034356 chr3L 3034444 3034460 10 103 11.0 19.5 15.2 0.6 120 chr3L 3034340 intergenic not near genes chr3L 3034400 intergenic not near genes chr3L 3034460 intergenic not near genes chr3L_10_3030001 chr3L_3030001 RAL-340_100b 1663 chr3L 3034357 3034388 chr3L 3034445 3034492 20 101 6.0 19.5 12.8 1.4 135 chr3L 3034357 intergenic not near genes chr3L 3034424 intergenic not near genes chr3L 3034492 intergenic not near genes chr3L_20_3030001 chr3L_3030001 RAL-340_100b 1664 chr3L 3040316 3040330 chr3L 3042115 3042124 S-element 6 1808 11.0 0.5 5.8 0.9 1808 chr3L 3040316 3` UTR CG2162 + chr3L 3041220 intergenic not near genes chr3L 3042124 intergenic Jafrac2 + chr3L_6_3040001 chr3L_3040001 RAL-340_100b 1665 chr3L 3050879 3050907 chr3L 3050991 3050998 7 109 7.0 5.0 6.0 1.0 119 chr3L 3050879 intron CG32485 + chr3L 3050938 intron CG32485 + chr3L 3050998 intron CG32485 + chr3L_7_3050001 chr3L_3050001 RAL-340_100b 1666 chr3L 3051719 3051751 chr3L 3051986 3052010 pogo 12 264 16.0 5.5 10.8 1.0 291 chr3L 3051719 3` UTR CG32485 + chr3L 3051864 intergenic CG32485 + chr3L 3052010 intergenic CG32485 + chr3L_12_3050001 chr3L_3050001 RAL-340_100b 1667 chr3L 3061271 3061315 chr3L 3069868 3069915 Tirant 17 8598 8.0 9.0 8.5 1.8 8644 chr3L 3061271 intron CG32486 - chr3L 3065593 intron CG32486 - chr3L 3069915 intron CG32486 - chr3L_17_3065001 chr3L_3065001 RAL-340_100b 1668 chr3L 3128165 3128216 chr3L 3128276 3128327 25 108 5.5 6.0 5.8 3.7 162 chr3L 3128165 intergenic prominin-like - chr3L 3128246 intergenic not near genes chr3L 3128327 intergenic not near genes chr3L_25_3125001 chr3L_3125001 RAL-340_100b 1669 chr3L 3141016 3141057 chr3L 3141110 3141130 13 105 3.5 8.0 5.8 1.9 114 chr3L 3141016 intron CG11537 - chr3L 3141073 intron CG11537 - chr3L 3141130 intron CG11537 - chr3L_13_3140001 chr3L_3140001 RAL-340_100b 1670 chr3L 3236650 3236707 chr3L 3236751 3236809 12 102 5.0 7.0 6.0 1.7 159 chr3L 3236650 intergenic CG11505 +,CG17746 - chr3L 3236730 intergenic CG11505 +,CG17746 - chr3L 3236809 intergenic CG17746 -,CG11505 + chr3L_12_3235001 chr3L_3235001 RAL-340_100b 1671 chr3L 3259818 3259827 chr3L 3259929 3259952 5 121 7.0 13.5 10.2 0.4 134 chr3L 3259818 intron ckd + chr3L 3259885 intron ckd + chr3L 3259952 intron ckd + chr3L_5_3255001 chr3L_3255001 RAL-340_100b 1672 chr3L 3269079 3269128 chr3L 3269194 3269244 11 114 0.0 6.5 3.2 2.6 165 chr3L 3269079 intergenic CG34265 + chr3L 3269162 intergenic CG34265 + chr3L 3269244 intergenic CG34265 + chr3L_11_3265001 chr3L_3265001 RAL-340_100b 1673 chr3L 3281425 3281453 chr3L 3281940 3281974 Doc 7 516 15.0 8.0 11.5 0.6 549 chr3L 3281425 intron CG12017 + chr3L 3281700 intron CG12017 + chr3L 3281974 intron CG12017 + chr3L_7_3280001 chr3L_3280001 RAL-340_100b 1674 chr3L 3281454 3281466 chr3L 3281933 3281986 Doc 16 512 12.5 6.0 9.2 1.6 532 chr3L 3281454 intron CG12017 + chr3L 3281720 intron CG12017 + chr3L 3281986 intron CG12017 + chr3L_16_3280001 chr3L_3280001 RAL-340_100b 1675 chr3L 3326359 3326414 chr3L 3326470 3326523 30 105 9.0 8.5 8.8 3.1 164 chr3L 3326359 intron,5` UTR CG11526 -,PHGPx + chr3L 3326441 intron,5` UTR CG11526 -,PHGPx + chr3L 3326523 intron,5` UTR CG11526 -,PHGPx + chr3L_30_3325001 chr3L_3325001 RAL-340_100b 1676 chr3L 3436269 3436297 chr3L 3436369 3436401 10 104 9.0 3.0 6.0 1.4 132 chr3L 3436269 intron eIF5B - chr3L 3436335 intron eIF5B - chr3L 3436401 intron eIF5B - chr3L_10_3435001 chr3L_3435001 RAL-340_100b 1677 chr3L 3469590 3469616 chr3L 3469684 3469725 13 105 20.0 8.0 14.0 0.9 135 chr3L 3469590 exon CG14971 - chr3L 3469658 intron CG14971 - chr3L 3469725 intron CG14971 - chr3L_13_3465001 chr3L_3465001 RAL-340_100b 1678 chr3L 3470144 3470183 chr3L 3470234 3470284 9 100 1.5 4.0 2.8 2.4 140 chr3L 3470144 intron CG14971 - chr3L 3470214 intron CG14971 - chr3L 3470284 intron CG14971 - chr3L_9_3470001 chr3L_3470001 RAL-340_100b 1679 chr3L 3475047 3475110 chr3L 3475517 3475523 jockey 41 461 8.5 20.5 14.5 2.6 476 chr3L 3475047 intron CG42324 + chr3L 3475285 intron CG42324 + chr3L 3475523 intron CG42324 + chr3L_41_3475001 chr3L_3475001 RAL-340_100b 1680 chr3L 3494173 3494205 chr3L 3494275 3494307 7 101 0.5 5.0 2.8 1.8 134 chr3L 3494173 intron CG42324 + chr3L 3494240 intron CG42324 + chr3L 3494307 intron CG42324 + chr3L_7_3490001 chr3L_3490001 RAL-340_100b 1681 chr3L 3574780 3574837 chr3L 3575065 3575122 26 283 7.5 15.0 11.2 2.1 342 chr3L 3574780 intron Eip63E + chr3L 3574951 intron Eip63E + chr3L 3575122 intron Eip63E + chr3L_26_3570001 chr3L_3570001 RAL-340_100b 1682 chr3L 3577710 3577766 chr3L 3577813 3577854 26 98 14.0 11.5 12.8 1.9 144 chr3L 3577710 intron Eip63E + chr3L 3577782 intron Eip63E + chr3L 3577854 intron Eip63E + chr3L_26_3575001 chr3L_3575001 RAL-340_100b 1683 chr3L 3601283 3601290 chr3L 3606619 3606626 copia 5 5336 21.0 11.5 16.2 0.3 5343 chr3L 3601283 intron Eip63E + chr3L 3603954 intron Eip63E + chr3L 3606626 intron Eip63E + chr3L_5_3600001 chr3L_3600001 RAL-340_100b 1684 chr3L 3601291 3601330 chr3L 3606618 3606666 copia 20 5334 9.5 11.5 10.5 1.7 5375 chr3L 3601291 intron Eip63E + chr3L 3603978 intron Eip63E + chr3L 3606666 intron Eip63E + chr3L_20_3600001 chr3L_3600001 RAL-340_100b 1685 chr3L 3627211 3627262 chr3L 3627341 3627357 17 121 3.5 7.0 5.2 2.7 146 chr3L 3627211 intron dar1 + chr3L 3627284 intron dar1 + chr3L 3627357 intron dar1 + chr3L_17_3625001 chr3L_3625001 RAL-340_100b 1686 chr3L 3676428 3676486 chr3L 3676543 3676571 42 108 5.5 11.0 8.2 4.6 143 chr3L 3676428 intergenic not near genes chr3L 3676500 intergenic not near genes chr3L 3676571 intergenic not near genes chr3L_42_3675001 chr3L_3675001 RAL-340_100b 1687 chr3L 3763731 3763758 chr3L 3763837 3763851 9 104 11.0 0.0 5.5 1.4 120 chr3L 3763731 intron CG32264 - chr3L 3763791 intron CG32264 - chr3L 3763851 intron CG32264 - chr3L_9_3760001 chr3L_3760001 RAL-340_100b 1688 chr3L 3766351 3766368 chr3L 3766582 3766594 6 229 19.0 9.5 14.2 0.4 243 chr3L 3766351 intron CG32264 - chr3L 3766472 intron CG32264 - chr3L 3766594 intron CG32264 - chr3L_6_3765001 chr3L_3765001 RAL-340_100b 1689 chr3L 3766369 3766395 chr3L 3766580 3766626 15 228 8.5 9.0 8.8 1.5 257 chr3L 3766369 intron CG32264 - chr3L 3766498 intron CG32264 - chr3L 3766626 intron CG32264 - chr3L_15_3765001 chr3L_3765001 RAL-340_100b 1690 chr3L 3766718 3766742 chr3L 3766829 3766848 10 110 3.5 5.0 4.2 1.9 130 chr3L 3766718 intron CG32264 - chr3L 3766783 intron CG32264 - chr3L 3766848 intron CG32264 - chr3L_10_3765001 chr3L_3765001 RAL-340_100b 1691 chr3L 3783247 3783287 chr3L 3783349 3783352 12 94 4.5 9.5 7.0 1.5 105 chr3L 3783247 intron CG32264 - chr3L 3783300 intron CG32264 - chr3L 3783352 intron CG32264 - chr3L_12_3780001 chr3L_3780001 RAL-340_100b 1692 chr3L 3797220 3797259 chr3L 3797323 3797367 20 106 2.0 9.0 5.5 3.1 147 chr3L 3797220 intron CG32264 - chr3L 3797294 intron CG32264 - chr3L 3797367 intron CG32264 - chr3L_20_3795001 chr3L_3795001 RAL-340_100b 1693 chr3L 3815027 3815079 chr3L 3815132 3815178 27 105 7.5 4.0 5.8 4.0 151 chr3L 3815027 intron,3` UTR Scsalpha +,CR43932 - chr3L 3815102 intron,3` UTR Scsalpha +,CR43932 - chr3L 3815178 intron,intron Scsalpha +,CR43932 - chr3L_27_3815001 chr3L_3815001 RAL-340_100b 1694 chr3L 3833712 3833743 chr3L 3833978 3834009 pogo 14 264 13.5 5.5 9.5 1.3 297 chr3L 3833712 intron enc + chr3L 3833860 intron enc + chr3L 3834009 intron enc + chr3L_14_3830001 chr3L_3830001 RAL-340_100b 1695 chr3L 3935802 3935847 chr3L 3935905 3935941 15 101 0.0 4.5 2.2 4.7 139 chr3L 3935802 5` UTR Eip63F-2 + chr3L 3935872 5` UTR Eip63F-2 + chr3L 3935941 5` UTR Eip63F-2 + chr3L_15_3935001 chr3L_3935001 RAL-340_100b 1696 chr3L 3946165 3946224 chr3L 3946267 3946311 20 96 5.5 7.5 6.5 2.7 146 chr3L 3946165 3` UTR CG14982 + chr3L 3946238 3` UTR CG14982 + chr3L 3946311 3` UTR CG14982 + chr3L_20_3945001 chr3L_3945001 RAL-340_100b 1697 chr3L 4099351 4099454 chr3L 4099451 4099552 9 118 0.5 1.5 1.0 4.5 201 chr3L 4099351 intron CG14995 - chr3L 4099452 intron CG14995 - chr3L 4099552 intron CG14995 - chr3L_9_4095001 chr3L_4095001 RAL-340_100b 1698 chr3L 4195115 4195170 chr3L 4195241 4195299 36 125 4.5 9.0 6.8 4.6 184 chr3L 4195115 exon CG43367 + chr3L 4195207 intron CG43367 + chr3L 4195299 exon CG43367 + chr3L_36_4195001 chr3L_4195001 RAL-340_100b 1699 chr3L 4328744 4328760 chr3L 4336238 4336283 412 7 7517 10.0 9.5 9.8 0.6 7539 chr3L 4328744 intron Cip4 - chr3L 4332514 intron Cip4 - chr3L 4336283 exon Cip4 - chr3L_7_4330001 chr3L_4330001 RAL-340_100b 1700 chr3L 4341331 4341335 chr3L 21448026 21448026 26 17106693 51.0 37.0 44.0 0.6 17106695 chr3L 4341331 intron Cip4 - chr3L 12894678 3` UTR CG14118 + chr3L 21448026 3` UTR Syx7 + chr3L_26_12890001 chr3L_12890001 RAL-340_100b 1701 chr3L 4343409 4343421 chr3L 4343685 4343697 11 276 19.0 8.0 13.5 0.8 288 chr3L 4343409 intron Cip4 - chr3L 4343553 intron Cip4 - chr3L 4343697 intron Cip4 - chr3L_11_4340001 chr3L_4340001 RAL-340_100b 1702 chr3L 4343424 4343446 chr3L 4343684 4343722 21 272 14.5 7.5 11.0 1.8 298 chr3L 4343424 intron Cip4 - chr3L 4343573 intron Cip4 - chr3L 4343722 intron Cip4 - chr3L_21_4340001 chr3L_4340001 RAL-340_100b 1703 chr3L 4343448 4343462 chr3L 4343677 4343710 7 258 9.5 6.0 7.8 0.8 262 chr3L 4343448 intron Cip4 - chr3L 4343579 intron Cip4 - chr3L 4343710 intron Cip4 - chr3L_7_4340001 chr3L_4340001 RAL-340_100b 1704 chr3L 4397416 4397419 chr3L 4397571 4397574 4 155 21.5 5.0 13.2 0.3 158 chr3L 4397416 intron slow + chr3L 4397495 intron slow + chr3L 4397574 intron slow + chr3L_4_4395001 chr3L_4395001 RAL-340_100b 1705 chr3L 4397420 4397471 chr3L 4397569 4397615 18 145 9.0 4.5 6.8 2.3 195 chr3L 4397420 intron slow + chr3L 4397518 intron slow + chr3L 4397615 intron slow + chr3L_18_4395001 chr3L_4395001 RAL-340_100b 1706 chr3L 4429512 4429515 chr3L 4429604 4429614 5 98 19.0 13.5 16.2 0.3 102 chr3L 4429512 intron nAChRbeta1 + chr3L 4429563 intron nAChRbeta1 + chr3L 4429614 5` UTR nAChRbeta1 + chr3L_5_4425001 chr3L_4425001 RAL-340_100b 1707 chr3L 4429516 4429555 chr3L 4429602 4429638 32 95 5.5 12.5 9.0 3.2 122 chr3L 4429516 intron nAChRbeta1 + chr3L 4429577 5` UTR nAChRbeta1 + chr3L 4429638 5` UTR nAChRbeta1 + chr3L_32_4425001 chr3L_4425001 RAL-340_100b 1708 chr3L 4441811 4441848 chr3L 4441915 4441921 12 98 14.5 14.5 14.5 0.8 110 chr3L 4441811 intergenic not near genes chr3L 4441866 intergenic not near genes chr3L 4441921 intergenic not near genes chr3L_12_4440001 chr3L_4440001 RAL-340_100b 1709 chr3L 4441855 4441860 chr3L 4441930 4441951 5 90 11.5 23.0 17.2 0.3 96 chr3L 4441855 intergenic not near genes chr3L 4441903 intergenic not near genes chr3L 4441951 intergenic not near genes chr3L_5_4440001 chr3L_4440001 RAL-340_100b 1710 chr3L 4491357 4491413 chr3L 4491475 4491526 10 117 12.0 0.0 6.0 1.4 169 chr3L 4491357 intergenic CG13722 - chr3L 4491442 intergenic CG13722 - chr3L 4491526 intergenic not near genes chr3L_10_4490001 chr3L_4490001 RAL-340_100b 1711 chr3L 4519405 4519451 chr3L 4519502 4519555 14 100 4.0 4.5 4.2 2.7 150 chr3L 4519405 intron Tie - chr3L 4519480 intron Tie - chr3L 4519555 intron Tie - chr3L_14_4515001 chr3L_4515001 RAL-340_100b 1712 chr3L 4657973 4658000 chr3L 4658435 4658487 10 484 1.5 4.0 2.8 2.6 514 chr3L 4657973 intron axo - chr3L 4658230 intron axo - chr3L 4658487 intron axo - chr3L_10_4655001 chr3L_4655001 RAL-340_100b 1713 chr3L 4699276 4699316 chr3L 4699381 4699421 11 102 5.5 7.5 6.5 1.5 145 chr3L 4699276 intron RhoGEF64C + chr3L 4699348 intron RhoGEF64C + chr3L 4699421 intron RhoGEF64C + chr3L_11_4695001 chr3L_4695001 RAL-340_100b 1714 chr3L 4754735 4754772 chr3L 4754836 4754873 10 98 8.5 8.0 8.2 1.1 138 chr3L 4754735 intron RhoGEF64C + chr3L 4754804 intron RhoGEF64C + chr3L 4754873 intron RhoGEF64C + chr3L_10_4750001 chr3L_4750001 RAL-340_100b 1715 chr3L 4769745 4769797 chr3L 4769890 4769931 16 144 7.0 7.0 7.0 2.0 186 chr3L 4769745 intron RhoGEF64C + chr3L 4769838 intron RhoGEF64C + chr3L 4769931 intron RhoGEF64C + chr3L_16_4765001 chr3L_4765001 RAL-340_100b 1716 chr3L 4807346 4807369 chr3L 4808898 4808926 18 1556 31.0 71.5 51.2 0.3 1580 chr3L 4807346 5` UTR CG18808 - chr3L 4808136 exon Dhc64C - chr3L 4808926 exon Dhc64C - chr3L_18_4805001 chr3L_4805001 RAL-340_100b 1717 chr3L 4807342 4807367 chr3L 4808935 4808941 4 1586 33.0 59.5 46.2 0.1 1599 chr3L 4807342 5` UTR CG18808 - chr3L 4808142 exon Dhc64C - chr3L 4808941 exon Dhc64C - chr3L_4_4805001 chr3L_4805001 RAL-340_100b 1718 chr3L 4858284 4858337 chr3L 4858397 4858414 18 108 11.5 10.5 11.0 1.5 130 chr3L 4858284 intergenic not near genes chr3L 4858349 intergenic not near genes chr3L 4858414 intergenic not near genes chr3L_18_4855001 chr3L_4855001 RAL-340_100b 1719 chr3L 4901105 4901157 chr3L 4907320 4907368 diver 16 6214 7.5 4.5 6.0 2.3 6263 chr3L 4901105 intergenic CG13704 + chr3L 4904236 intergenic not near genes chr3L 4907368 intergenic not near genes chr3L_16_4900001 chr3L_4900001 RAL-340_100b 1720 chr3L 5034133 5034190 chr3L 5043310 5043364 roo 16 9175 8.0 3.0 5.5 2.5 9231 chr3L 5034133 intron Con - chr3L 5038748 intron Con - chr3L 5043364 intron Con - chr3L_16_5035001 chr3L_5035001 RAL-340_100b 1721 chr3L 5045435 5045472 chr3L 5050241 5050278 Doc 18 4806 9.5 9.5 9.5 1.7 4843 chr3L 5045435 intron Con - chr3L 5047856 intron Con - chr3L 5050278 intron Con - chr3L_18_5045001 chr3L_5045001 RAL-340_100b 1722 chr3L 5101205 5101231 chr3L 5101279 5101296 12 91 6.0 2.5 4.2 2.3 91 chr3L 5101205 intergenic not near genes chr3L 5101250 intergenic not near genes chr3L 5101296 intergenic not near genes chr3L_12_5100001 chr3L_5100001 RAL-340_100b 1723 chr3L 5104462 5104511 chr3L 5124621 5124670 18 20158 3.5 20.0 11.8 1.4 20208 chr3L 5104462 intergenic not near genes chr3L 5114566 intergenic not near genes chr3L 5124670 intergenic not near genes chr3L_18_5110001 chr3L_5110001 RAL-340_100b 1724 chr3L 5130904 5130948 chr3L 5131032 5131039 8 122 13.0 3.5 8.2 0.9 135 chr3L 5130904 intergenic not near genes chr3L 5130972 intergenic not near genes chr3L 5131039 intergenic not near genes chr3L_8_5130001 chr3L_5130001 RAL-340_100b 1725 chr3L 5248980 5249007 chr3L 5249089 5249116 19 106 5.5 17.0 11.2 1.6 136 chr3L 5248980 intron shep - chr3L 5249048 intron shep - chr3L 5249116 intron shep - chr3L_19_5245001 chr3L_5245001 RAL-340_100b 1726 chr3L 5254953 5255007 chr3L 5255492 5255546 33 535 8.5 12.0 10.2 2.9 593 chr3L 5254953 intron shep - chr3L 5255250 intron shep - chr3L 5255546 intron shep - chr3L_33_5255001 chr3L_5255001 RAL-340_100b 1727 chr3L 5261143 5261182 chr3L 5261246 5261285 16 103 8.0 11.5 9.8 1.5 142 chr3L 5261143 intron shep - chr3L 5261214 intron shep - chr3L 5261285 intron shep - chr3L_16_5260001 chr3L_5260001 RAL-340_100b 1728 chr3L 5299150 5299166 chr3L 5306601 5306617 Quasimodo 5 7451 3.5 1.0 2.2 1.6 7467 chr3L 5299150 intergenic not near genes chr3L 5302884 intergenic not near genes chr3L 5306617 intergenic not near genes chr3L_5_5300001 chr3L_5300001 RAL-340_100b 1729 chr3L 5306653 5306684 chr3L 5306767 5306776 5 110 1.0 1.5 1.2 2.3 123 chr3L 5306653 intergenic not near genes chr3L 5306714 intergenic not near genes chr3L 5306776 intergenic not near genes chr3L_5_5305001 chr3L_5305001 RAL-340_100b 1730 chr3L 5316926 5316968 chr3L 5317036 5317078 21 108 25.5 13.5 19.5 1.0 152 chr3L 5316926 intergenic CR45741 - chr3L 5317002 intergenic not near genes chr3L 5317078 intergenic not near genes chr3L_21_5315001 chr3L_5315001 RAL-340_100b 1731 chr3L 5327440 5327478 chr3L 5327550 5327588 8 108 8.5 8.0 8.2 0.9 148 chr3L 5327440 intergenic not near genes chr3L 5327514 intergenic not near genes chr3L 5327588 intergenic not near genes chr3L_8_5325001 chr3L_5325001 RAL-340_100b 1732 chr3L 5351086 5351134 chr3L 5351196 5351230 12 108 5.5 3.0 4.2 2.3 144 chr3L 5351086 intron lama - chr3L 5351158 intron lama - chr3L 5351230 intron lama - chr3L_12_5350001 chr3L_5350001 RAL-340_100b 1733 chr3L 5396443 5396498 chr3L 5396554 5396556 4 98 0.0 4.5 2.2 1.2 113 chr3L 5396443 intergenic not near genes chr3L 5396500 intergenic not near genes chr3L 5396556 intergenic not near genes chr3L_4_5395001 chr3L_5395001 RAL-340_100b 1734 chr3L 5403424 5403450 chr3L 5403847 5403873 17 421 10.5 14.0 12.2 1.3 449 chr3L 5403424 intergenic not near genes chr3L 5403648 intergenic not near genes chr3L 5403873 intergenic not near genes chr3L_17_5400001 chr3L_5400001 RAL-340_100b 1735 chr3L 5403462 5403466 chr3L 5403885 5403889 4 423 8.0 24.0 16.0 0.2 427 chr3L 5403462 intergenic not near genes chr3L 5403676 intergenic not near genes chr3L 5403889 intergenic not near genes chr3L_4_5400001 chr3L_5400001 RAL-340_100b 1736 chr3L 5449508 5449564 chr3L 5449612 5449638 17 98 4.5 6.5 5.5 2.6 130 chr3L 5449508 intergenic not near genes chr3L 5449573 intergenic not near genes chr3L 5449638 intergenic not near genes chr3L_17_5445001 chr3L_5445001 RAL-340_100b 1737 chr3L 5482937 5482949 chr3L 5483171 5483183 12 233 23.5 50.5 37.0 0.3 246 chr3L 5482937 exon CG4835 + chr3L 5483060 exon CG4835 + chr3L 5483183 exon CG4835 + chr3L_12_5480001 chr3L_5480001 RAL-340_100b 1738 chr3L 5483036 5483066 chr3L 5483177 5483210 10 145 2.0 70.5 36.2 0.3 174 chr3L 5483036 exon CG4835 + chr3L 5483123 exon CG4835 + chr3L 5483210 exon CG4835 + chr3L_10_5480001 chr3L_5480001 RAL-340_100b 1739 chr3L 5483069 5483069 chr3L 5483190 5483205 4 127 2.0 100.0 51.0 0.1 136 chr3L 5483069 exon CG4835 + chr3L 5483137 exon CG4835 + chr3L 5483205 exon CG4835 + chr3L_4_5480001 chr3L_5480001 RAL-340_100b 1740 chr3L 5483075 5483076 chr3L 5483180 5483193 6 113 2.0 78.5 40.2 0.1 118 chr3L 5483075 exon CG4835 + chr3L 5483134 exon CG4835 + chr3L 5483193 exon CG4835 + chr3L_6_5480001 chr3L_5480001 RAL-340_100b 1741 chr3L 5483077 5483088 chr3L 5483180 5483196 16 115 1.5 78.5 40.0 0.4 119 chr3L 5483077 exon CG4835 + chr3L 5483136 exon CG4835 + chr3L 5483196 exon CG4835 + chr3L_16_5480001 chr3L_5480001 RAL-340_100b 1742 chr3L 5483089 5483092 chr3L 5483180 5483181 4 100 1.0 78.5 39.8 0.1 92 chr3L 5483089 exon CG4835 + chr3L 5483135 exon CG4835 + chr3L 5483181 exon CG4835 + chr3L_4_5480001 chr3L_5480001 RAL-340_100b 1743 chr3L 5483066 5483076 chr3L 5483180 5483185 4 108 2.0 78.5 40.2 0.1 119 chr3L 5483066 exon CG4835 + chr3L 5483126 exon CG4835 + chr3L 5483185 exon CG4835 + chr3L_4_5480001 chr3L_5480001 RAL-340_100b 1744 chr3L 5514725 5514768 chr3L 5514827 5514870 19 101 7.5 8.5 8.0 2.1 145 chr3L 5514725 intron Lkr - chr3L 5514798 intron Lkr - chr3L 5514870 intron Lkr - chr3L_19_5510001 chr3L_5510001 RAL-340_100b 1745 chr3L 5519791 5519835 chr3L 5519901 5519940 14 106 19.0 4.5 11.8 1.1 149 chr3L 5519791 intron Lkr - chr3L 5519866 intron Lkr - chr3L 5519940 intron Lkr - chr3L_14_5515001 chr3L_5515001 RAL-340_100b 1746 chr3L 5537695 5537722 chr3L 5538062 5538090 jockey 7 364 16.0 7.0 11.5 0.6 395 chr3L 5537695 intergenic not near genes chr3L 5537892 intergenic not near genes chr3L 5538090 intergenic CG10625 - chr3L_7_5535001 chr3L_5535001 RAL-340_100b 1747 chr3L 5537723 5537755 chr3L 5538060 5538109 jockey 9 347 9.0 6.0 7.5 1.1 386 chr3L 5537723 intergenic not near genes chr3L 5537916 intergenic CG10625 - chr3L 5538109 intergenic CG10625 - chr3L_9_5535001 chr3L_5535001 RAL-340_100b 1748 chr3L 5581455 5581491 chr3L 5581566 5581602 9 110 7.5 9.0 8.2 1.0 147 chr3L 5581455 intergenic not near genes chr3L 5581528 intergenic not near genes chr3L 5581602 intergenic not near genes chr3L_9_5580001 chr3L_5580001 RAL-340_100b 1749 chr3L 5654081 5654084 chr3L 5654186 5654189 4 105 19.5 0.0 9.8 0.4 108 chr3L 5654081 intergenic not near genes chr3L 5654135 intergenic not near genes chr3L 5654189 intergenic lin-28 + chr3L_4_5650001 chr3L_5650001 RAL-340_100b 1750 chr3L 5770747 5770751 chr3L 15253229 15253229 4 9482479 36.5 40.5 38.5 0.1 9482482 chr3L 5770747 intron scny + chr3L 10511988 intron A2bp1 + chr3L 15253229 intergenic not near genes chr3L_4_10510001 chr3L_10510001 RAL-340_100b 1751 chr3L 5809948 5809953 chr3L 5810040 5810054 4 98 13.0 16.0 14.5 0.3 106 chr3L 5809948 intron S6k - chr3L 5810001 intron S6k - chr3L 5810054 intron S6k - chr3L_4_5805001 chr3L_5805001 RAL-340_100b 1752 chr3L 5809954 5809988 chr3L 5810034 5810070 33 94 10.5 12.5 11.5 2.6 116 chr3L 5809954 intron S6k - chr3L 5810012 intron S6k - chr3L 5810070 intron S6k - chr3L_33_5810001 chr3L_5810001 RAL-340_100b 1753 chr3L 5910008 5910059 chr3L 5910274 5910325 pogo 19 265 6.5 8.5 7.5 2.2 317 chr3L 5910008 intron CG13288 + chr3L 5910166 intron CG13288 + chr3L 5910325 intron CG13288 + chr3L_19_5910001 chr3L_5910001 RAL-340_100b 1754 chr3L 5926307 5926339 chr3L 5926511 5926544 BS 23 208 8.0 17.5 12.8 1.7 237 chr3L 5926307 intron Vap-33B + chr3L 5926426 intron Vap-33B + chr3L 5926544 intron Vap-33B + chr3L_23_5925001 chr3L_5925001 RAL-340_100b 1755 chr3L 5926340 5926351 chr3L 5926509 5926509 BS 11 202 6.0 16.5 11.2 0.9 169 chr3L 5926340 intron Vap-33B + chr3L 5926424 intron Vap-33B + chr3L 5926509 intron Vap-33B + chr3L_11_5925001 chr3L_5925001 RAL-340_100b 1756 chr3L 5957550 5957606 chr3L 5957652 5957688 28 94 15.0 9.0 12.0 2.2 138 chr3L 5957550 intergenic not near genes chr3L 5957619 intergenic not near genes chr3L 5957688 intergenic not near genes chr3L_28_5955001 chr3L_5955001 RAL-340_100b 1757 chr3L 5992574 5992621 chr3L 5992696 5992748 31 125 10.0 4.5 7.2 3.8 174 chr3L 5992574 intergenic not near genes chr3L 5992661 intergenic not near genes chr3L 5992748 intergenic not near genes chr3L_31_5990001 chr3L_5990001 RAL-340_100b 1758 chr3L 6001666 6001668 chr3L 6004391 6004393 jockey 4 2725 9.0 2.5 5.8 0.6 2727 chr3L 6001666 intron PVRAP + chr3L 6003030 intron PVRAP + chr3L 6004393 intron PVRAP + chr3L_4_6000001 chr3L_6000001 RAL-340_100b 1759 chr3L 6001670 6001710 chr3L 6004385 6004435 jockey 18 2723 5.5 2.5 4.0 3.6 2765 chr3L 6001670 intron PVRAP + chr3L 6003052 intron PVRAP + chr3L 6004435 intron PVRAP + chr3L_18_6000001 chr3L_6000001 RAL-340_100b 1760 chr3L 6040341 6040392 chr3L 6042721 6042773 Doc 30 2376 10.5 5.0 7.8 3.4 2432 chr3L 6040341 intergenic Jon65Aiv + chr3L 6041557 intergenic not near genes chr3L 6042773 intergenic not near genes chr3L_30_6040001 chr3L_6040001 RAL-340_100b 1761 chr3L 6052127 6052140 chr3L 6052238 6052251 6 111 1.5 12.0 6.8 0.8 124 chr3L 6052127 intergenic Jon65Aii +,Jon65Aiii + chr3L 6052189 intergenic Jon65Aii +,Jon65Aiii + chr3L 6052251 intergenic Jon65Aii + chr3L_6_6050001 chr3L_6050001 RAL-340_100b 1762 chr3L 6052145 6052148 chr3L 6052227 6052248 4 96 1.0 8.0 4.5 0.7 103 chr3L 6052145 intergenic Jon65Aii +,Jon65Aiii + chr3L 6052196 intergenic Jon65Aii + chr3L 6052248 intergenic Jon65Aii + chr3L_4_6050001 chr3L_6050001 RAL-340_100b 1763 chr3L 6052636 6052640 chr3L 6052746 6052750 4 110 14.5 38.5 26.5 0.1 114 chr3L 6052636 exon Jon65Aii + chr3L 6052693 intron Jon65Aii + chr3L 6052750 exon Jon65Aii + chr3L_4_6050001 chr3L_6050001 RAL-340_100b 1764 chr3L 6052643 6052663 chr3L 6052739 6052768 19 104 10.5 33.5 22.0 0.8 125 chr3L 6052643 exon Jon65Aii + chr3L 6052706 intron Jon65Aii + chr3L 6052768 exon Jon65Aii + chr3L_19_6050001 chr3L_6050001 RAL-340_100b 1765 chr3L 6138365 6138417 chr3L 6138470 6138522 23 103 0.5 5.5 3.0 5.8 157 chr3L 6138365 intergenic Lcp65Ae - chr3L 6138444 intergenic Lcp65Ae - chr3L 6138522 intergenic Lcp65Ae - chr3L_23_6135001 chr3L_6135001 RAL-340_100b 1766 chr3L 6155671 6155711 chr3L 6155782 6155816 20 107 22.0 5.5 13.8 1.4 145 chr3L 6155671 intergenic CR45421 - chr3L 6155744 intergenic not near genes chr3L 6155816 intergenic not near genes chr3L_20_6155001 chr3L_6155001 RAL-340_100b 1767 chr3L 6169104 6169124 chr3L 6169210 6169230 5 106 9.5 15.0 12.2 0.4 126 chr3L 6169104 3` UTR CG10289 - chr3L 6169167 3` UTR CG10289 - chr3L 6169230 3` UTR CG10289 - chr3L_5_6165001 chr3L_6165001 RAL-340_100b 1768 chr3L 6220892 6220945 chr3L 6230069 6230122 roo 28 9174 17.5 11.0 14.2 1.8 9230 chr3L 6220892 5` UTR pncr008:3L + chr3L 6225507 intergenic not near genes chr3L 6230122 intergenic not near genes chr3L_28_6225001 chr3L_6225001 RAL-340_100b 1769 chr3L 6315867 6315900 chr3L 6316004 6316021 12 132 6.0 7.0 6.5 1.6 154 chr3L 6315867 intergenic not near genes chr3L 6315944 intergenic not near genes chr3L 6316021 intergenic not near genes chr3L_12_6315001 chr3L_6315001 RAL-340_100b 1770 chr3L 6334992 6335010 chr3L 6335488 6335502 297 8 495 23.5 18.0 20.8 0.4 510 chr3L 6334992 intron CG13300 - chr3L 6335247 intron CG13300 - chr3L 6335502 intron CG13300 - chr3L_8_6335001 chr3L_6335001 RAL-340_100b 1771 chr3L 6335024 6335038 chr3L 6335493 6335534 297 8 490 10.0 21.5 15.8 0.5 510 chr3L 6335024 intron CG13300 - chr3L 6335279 intron CG13300 - chr3L 6335534 intron CG13300 - chr3L_8_6335001 chr3L_6335001 RAL-340_100b 1772 chr3L 6405642 6405687 chr3L 6432125 6432170 roo 20 26484 11.5 11.5 11.5 1.6 26528 chr3L 6405642 intron CG42747 + chr3L 6418906 intron CG42747 + chr3L 6432170 intron CG42747 + chr3L_20_6415001 chr3L_6415001 RAL-340_100b 1773 chr3L 6472812 6472861 chr3L 6472924 6472960 12 109 3.5 8.0 5.8 1.8 148 chr3L 6472812 intron CG42747 + chr3L 6472886 intron CG42747 + chr3L 6472960 intron CG42747 + chr3L_12_6470001 chr3L_6470001 RAL-340_100b 1774 chr3L 6512251 6512272 chr3L 6512356 6512367 9 104 12.5 7.0 9.8 0.8 116 chr3L 6512251 intron sfl + chr3L 6512309 intron sfl + chr3L 6512367 intron sfl + chr3L_9_6510001 chr3L_6510001 RAL-340_100b 1775 chr3L 6512274 6512290 chr3L 6512353 6512378 7 90 6.5 7.0 6.8 0.9 104 chr3L 6512274 intron sfl + chr3L 6512326 intron sfl + chr3L 6512378 intron sfl + chr3L_7_6510001 chr3L_6510001 RAL-340_100b 1776 chr3L 6540246 6540294 chr3L 6540352 6540399 17 105 7.5 3.0 5.2 2.7 153 chr3L 6540246 intron sfl + chr3L 6540322 intron sfl + chr3L 6540399 intron sfl + chr3L_17_6540001 chr3L_6540001 RAL-340_100b 1777 chr3L 6557951 6558007 chr3L 6558062 6558087 26 103 5.0 9.0 7.0 3.2 136 chr3L 6557951 intron CG18769 + chr3L 6558019 intron CG18769 + chr3L 6558087 intron CG18769 + chr3L_26_6555001 chr3L_6555001 RAL-340_100b 1778 chr3L 6562831 6562867 chr3L 6562936 6562964 12 102 5.0 9.0 7.0 1.5 133 chr3L 6562831 intron CG18769 + chr3L 6562898 intron CG18769 + chr3L 6562964 intron CG18769 + chr3L_12_6560001 chr3L_6560001 RAL-340_100b 1779 chr3L 6593764 6593816 chr3L 6593876 6593928 13 109 6.5 12.0 9.2 1.3 164 chr3L 6593764 3` UTR CG18769 + chr3L 6593846 3` UTR CG18769 + chr3L 6593928 3` UTR CG18769 + chr3L_13_6590001 chr3L_6590001 RAL-340_100b 1780 chr3L 6620591 6620598 chr3L 6621056 6621063 Rt1c 5 465 23.0 48.0 35.5 0.1 472 chr3L 6620591 intergenic not near genes chr3L 6620827 intergenic not near genes chr3L 6621063 intergenic not near genes chr3L_5_6620001 chr3L_6620001 RAL-340_100b 1781 chr3L 6655566 6655570 chr3L 18417066 18417066 5 11761497 40.5 45.0 42.8 0.1 11761500 chr3L 6655566 intergenic not near genes chr3L 12536316 exon CG4069 - chr3L 18417066 intergenic not near genes chr3L_5_12535001 chr3L_12535001 RAL-340_100b 1782 chr3L 6668967 6668996 chr3L 6669072 6669087 10 104 11.5 1.0 6.2 1.4 120 chr3L 6668967 intergenic not near genes chr3L 6669027 intergenic not near genes chr3L 6669087 intergenic not near genes chr3L_10_6665001 chr3L_6665001 RAL-340_100b 1783 chr3L 6723692 6723733 chr3L 6723814 6723855 17 114 5.5 15.0 10.2 1.5 163 chr3L 6723692 intergenic not near genes chr3L 6723774 intergenic not near genes chr3L 6723855 intergenic not near genes chr3L_17_6720001 chr3L_6720001 RAL-340_100b 1784 chr3L 6778526 6778535 chr3L 6778641 6778653 4 117 0.0 5.5 2.8 1.1 127 chr3L 6778526 intergenic not near genes chr3L 6778590 intergenic not near genes chr3L 6778653 intergenic not near genes chr3L_4_6775001 chr3L_6775001 RAL-340_100b 1785 chr3L 6781100 6781147 chr3L 6783138 6783138 Doc 12 2032 6.5 11.0 8.8 1.2 2038 chr3L 6781100 intergenic not near genes chr3L 6782119 intergenic not near genes chr3L 6783138 intergenic not near genes chr3L_12_6780001 chr3L_6780001 RAL-340_100b 1786 chr3L 6786873 6786908 chr3L 6786991 6787026 18 116 15.5 11.0 13.2 1.3 153 chr3L 6786873 3` UTR CR45759 - chr3L 6786950 3` UTR CR45759 - chr3L 6787026 3` UTR CR45759 - chr3L_18_6785001 chr3L_6785001 RAL-340_100b 1787 chr3L 6820619 6820640 chr3L 6820727 6820733 5 105 14.0 13.0 13.5 0.3 114 chr3L 6820619 intergenic not near genes chr3L 6820676 intergenic not near genes chr3L 6820733 intergenic not near genes chr3L_5_6820001 chr3L_6820001 RAL-340_100b 1788 chr3L 6855912 6855949 chr3L 6860721 6860758 Doc 12 4806 8.5 14.0 11.2 1.0 4846 chr3L 6855912 intergenic not near genes chr3L 6858335 intergenic not near genes chr3L 6860758 intergenic not near genes chr3L_12_6855001 chr3L_6855001 RAL-340_100b 1789 chr3L 6868694 6868735 chr3L 6868797 6868838 9 102 0.5 2.0 1.2 4.1 144 chr3L 6868694 intergenic not near genes chr3L 6868766 intergenic not near genes chr3L 6868838 intergenic not near genes chr3L_9_6865001 chr3L_6865001 RAL-340_100b 1790 chr3L 6887495 6887527 chr3L 6895012 6895044 roo 11 7516 12.0 10.0 11.0 0.9 7549 chr3L 6887495 intergenic not near genes chr3L 6891270 intergenic not near genes chr3L 6895044 intergenic not near genes chr3L_11_6890001 chr3L_6890001 RAL-340_100b 1791 chr3L 6887536 6887547 chr3L 6895011 6895027 roo 5 7501 8.0 9.5 8.8 0.5 7491 chr3L 6887536 intergenic not near genes chr3L 6891282 intergenic not near genes chr3L 6895027 intergenic not near genes chr3L_5_6890001 chr3L_6890001 RAL-340_100b 1792 chr3L 6907989 6908045 chr3L 6908099 6908148 9 104 7.5 0.0 3.8 1.9 159 chr3L 6907989 intergenic not near genes chr3L 6908068 intergenic not near genes chr3L 6908148 intergenic not near genes chr3L_9_6905001 chr3L_6905001 RAL-340_100b 1793 chr3L 6934318 6934361 chr3L 6934448 6934451 12 131 4.0 12.5 8.2 1.3 133 chr3L 6934318 exon CG14820 + chr3L 6934384 intron CG14820 + chr3L 6934451 intron CG14820 + chr3L_12_6930001 chr3L_6930001 RAL-340_100b 1794 chr3L 6981930 6981936 chr3L 6982109 6982115 5 179 0.0 5.5 2.8 1.3 185 chr3L 6981930 intergenic not near genes chr3L 6982022 intergenic not near genes chr3L 6982115 intergenic not near genes chr3L_5_6980001 chr3L_6980001 RAL-340_100b 1795 chr3L 6994872 6994914 chr3L 6995508 6995550 BS 26 635 3.0 13.5 8.2 2.8 678 chr3L 6994872 intergenic bin + chr3L 6995211 intergenic not near genes chr3L 6995550 intergenic not near genes chr3L_26_6995001 chr3L_6995001 RAL-340_100b 1796 chr3L 7033154 7033167 chr3L 7033259 7033268 4 102 7.0 12.0 9.5 0.4 114 chr3L 7033154 intron Mp + chr3L 7033211 intron Mp + chr3L 7033268 intron Mp + chr3L_4_7030001 chr3L_7030001 RAL-340_100b 1797 chr3L 7033168 7033188 chr3L 7033257 7033280 8 92 5.5 11.0 8.2 0.9 112 chr3L 7033168 intron Mp + chr3L 7033224 intron Mp + chr3L 7033280 intron Mp + chr3L_8_7030001 chr3L_7030001 RAL-340_100b 1798 chr3L 7033191 7033204 chr3L 7033277 7033291 6 91 4.5 18.0 11.2 0.5 100 chr3L 7033191 intron Mp + chr3L 7033241 intron Mp + chr3L 7033291 intron Mp + chr3L_6_7030001 chr3L_7030001 RAL-340_100b 1799 chr3L 7041901 7041925 chr3L 7042003 7042027 11 100 8.0 9.0 8.5 1.2 126 chr3L 7041901 intron Mp + chr3L 7041964 intron Mp + chr3L 7042027 intron Mp + chr3L_11_7040001 chr3L_7040001 RAL-340_100b 1800 chr3L 7061381 7061398 chr3L 7061492 7061509 7 111 15.0 6.5 10.8 0.6 128 chr3L 7061381 intron CG8641 - chr3L 7061445 intron CG8641 - chr3L 7061509 intron CG8641 - chr3L_7_7060001 chr3L_7060001 RAL-340_100b 1801 chr3L 7100410 7100459 chr3L 7100522 7100566 17 107 5.0 14.0 9.5 1.6 156 chr3L 7100410 intron form3 + chr3L 7100488 intron form3 + chr3L 7100566 intron form3 + chr3L_17_7100001 chr3L_7100001 RAL-340_100b 1802 chr3L 7112566 7112611 chr3L 7112675 7112711 17 99 7.0 7.0 7.0 2.1 145 chr3L 7112566 intron form3 + chr3L 7112638 intron form3 + chr3L 7112711 intron form3 + chr3L_17_7110001 chr3L_7110001 RAL-340_100b 1803 chr3L 7129925 7129979 chr3L 7130142 7130164 BS 6 212 3.0 3.0 3.0 1.5 239 chr3L 7129925 intergenic CG15829 + chr3L 7130044 intergenic CG15829 + chr3L 7130164 intergenic CG15829 + chr3L_6_7130001 chr3L_7130001 RAL-340_100b 1804 chr3L 7150869 7150877 chr3L 7150970 7150978 5 100 10.0 9.5 9.8 0.5 109 chr3L 7150869 intron corn - chr3L 7150924 intron corn - chr3L 7150978 intron corn - chr3L_5_7150001 chr3L_7150001 RAL-340_100b 1805 chr3L 7150885 7150902 chr3L 7150955 7151003 5 95 6.0 6.5 6.2 0.7 118 chr3L 7150885 intron corn - chr3L 7150944 intron corn - chr3L 7151003 intron corn - chr3L_5_7150001 chr3L_7150001 RAL-340_100b 1806 chr3L 7187382 7187390 chr3L 7187489 7187497 4 106 0.5 0.5 0.5 2.7 115 chr3L 7187382 intron Dscam2 - chr3L 7187440 intron Dscam2 - chr3L 7187497 intron Dscam2 - chr3L_4_7185001 chr3L_7185001 RAL-340_100b 1807 chr3L 7201270 7201272 chr3L 21448023 21448026 5 14246755 56.0 36.0 46.0 0.1 14246756 chr3L 7201270 intergenic not near genes chr3L 14324648 intron,intron fz +,CR45025 - chr3L 21448026 3` UTR Syx7 + chr3L_5_14320001 chr3L_14320001 RAL-340_100b 1808 chr3L 7258911 7258916 chr3L 7259076 7259081 5 165 8.0 12.0 10.0 0.5 170 chr3L 7258911 intron CG14830 - chr3L 7258996 intron CG14830 - chr3L 7259081 intron CG14830 - chr3L_5_7255001 chr3L_7255001 RAL-340_100b 1809 chr3L 7258918 7258933 chr3L 7259069 7259098 9 162 5.0 10.0 7.5 1.1 180 chr3L 7258918 intron CG14830 - chr3L 7259008 intron CG14830 - chr3L 7259098 intron CG14830 - chr3L_9_7255001 chr3L_7255001 RAL-340_100b 1810 chr3L 7285423 7285476 chr3L 7285526 7285579 26 101 3.5 3.5 3.5 5.8 156 chr3L 7285423 intron unc-13-4A - chr3L 7285501 intron unc-13-4A - chr3L 7285579 intron unc-13-4A - chr3L_26_7285001 chr3L_7285001 RAL-340_100b 1811 chr3L 7377301 7377345 chr3L 7380431 7380475 297 11 3128 2.5 10.5 6.5 1.5 3174 chr3L 7377301 intron SMSr - chr3L 7378888 intron SMSr - chr3L 7380475 intron SMSr - chr3L_11_7375001 chr3L_7375001 RAL-340_100b 1812 chr3L 7443995 7444008 chr3L 7444118 7444131 9 121 18.0 0.5 9.2 0.9 136 chr3L 7443995 intron CG42458 + chr3L 7444063 intron CG42458 + chr3L 7444131 intron CG42458 + chr3L_9_7440001 chr3L_7440001 RAL-340_100b 1813 chr3L 7444009 7444048 chr3L 7444117 7444131 6 113 5.0 0.5 2.8 1.6 122 chr3L 7444009 intron CG42458 + chr3L 7444070 intron CG42458 + chr3L 7444131 intron CG42458 + chr3L_6_7440001 chr3L_7440001 RAL-340_100b 1814 chr3L 7498744 7498785 chr3L 7503541 7503587 F-element 19 4797 7.5 8.5 8.0 2.1 4843 chr3L 7498744 5` UTR CG8539 - chr3L 7501166 intergenic not near genes chr3L 7503587 intergenic not near genes chr3L_19_7500001 chr3L_7500001 RAL-340_100b 1815 chr3L 7574840 7574849 chr3L 7574941 7574951 5 100 0.5 2.5 1.5 2.0 111 chr3L 7574840 intergenic not near genes chr3L 7574896 intergenic not near genes chr3L 7574951 intergenic not near genes chr3L_5_7570001 chr3L_7570001 RAL-340_100b 1816 chr3L 7576191 7576245 chr3L 7576304 7576358 18 108 8.0 6.0 7.0 2.2 167 chr3L 7576191 intergenic not near genes chr3L 7576274 intergenic not near genes chr3L 7576358 intergenic not near genes chr3L_18_7575001 chr3L_7575001 RAL-340_100b 1817 chr3L 7591170 7591181 chr3L 7591249 7591284 4 100 6.0 6.0 6.0 0.6 114 chr3L 7591170 intergenic CG7716 - chr3L 7591227 intergenic CG7716 - chr3L 7591284 intergenic CG7716 - chr3L_4_7590001 chr3L_7590001 RAL-340_100b 1818 chr3L 7591873 7591928 chr3L 7591975 7592030 22 97 7.0 16.0 11.5 1.8 157 chr3L 7591873 intergenic not near genes chr3L 7591952 intergenic not near genes chr3L 7592030 intergenic not near genes chr3L_22_7590001 chr3L_7590001 RAL-340_100b 1819 chr3L 7749470 7749471 chr3L 11777678 11777678 13 4028207 35.5 21.0 28.2 0.4 4028208 chr3L 7749470 intron,3` UTR CG32373 +,CG13685 + chr3L 9763574 5` UTR CG8177 + chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_13_9760001 chr3L_9760001 RAL-340_100b 1820 chr3L 7752124 7752137 chr3L 7752256 7752269 7 131 26.0 15.0 20.5 0.3 145 chr3L 7752124 intron CG32373 + chr3L 7752196 intron CG32373 + chr3L 7752269 intron CG32373 + chr3L_7_7750001 chr3L_7750001 RAL-340_100b 1821 chr3L 7752140 7752174 chr3L 7752254 7752255 16 122 14.0 14.5 14.2 1.1 115 chr3L 7752140 intron CG32373 + chr3L 7752198 intron CG32373 + chr3L 7752255 intron CG32373 + chr3L_16_7750001 chr3L_7750001 RAL-340_100b 1822 chr3L 7769271 7769315 chr3L 7769390 7769402 18 115 5.0 10.5 7.8 2.0 131 chr3L 7769271 intron Clk - chr3L 7769336 intron Clk - chr3L 7769402 intron Clk - chr3L_18_7765001 chr3L_7765001 RAL-340_100b 1823 chr3L 7793691 7793740 chr3L 7800768 7800813 297 24 7074 2.5 11.5 7.0 3.0 7122 chr3L 7793691 intron CG32369 - chr3L 7797252 intron CG32369 - chr3L 7800813 intron CG32369 - chr3L_24_7795001 chr3L_7795001 RAL-340_100b 1824 chr3L 7857320 7857354 chr3L 7857423 7857457 7 99 5.5 7.0 6.2 1.0 137 chr3L 7857320 intron Pdp1 - chr3L 7857388 intron Pdp1 - chr3L 7857457 intron Pdp1 - chr3L_7_7855001 chr3L_7855001 RAL-340_100b 1825 chr3L 7869647 7869654 chr3L 7869744 7869756 5 100 52.0 41.0 46.5 0.1 109 chr3L 7869647 exon CG32365 + chr3L 7869702 exon CG32365 + chr3L 7869756 exon CG32365 + chr3L_5_7865001 chr3L_7865001 RAL-340_100b 1826 chr3L 7869655 7869659 chr3L 7869754 7869761 4 100 50.0 55.5 52.8 0.1 106 chr3L 7869655 exon CG32365 + chr3L 7869708 exon CG32365 + chr3L 7869761 exon CG32365 + chr3L_4_7865001 chr3L_7865001 RAL-340_100b 1827 chr3L 7869660 7869664 chr3L 7869752 7869756 6 98 49.0 51.5 50.2 0.1 96 chr3L 7869660 exon CG32365 + chr3L 7869708 exon CG32365 + chr3L 7869756 exon CG32365 + chr3L_6_7865001 chr3L_7865001 RAL-340_100b 1828 chr3L 7883722 7883774 chr3L 7883904 7883921 20 178 3.0 1.0 2.0 6.7 199 chr3L 7883722 intron CG32365 + chr3L 7883822 intron CG32365 + chr3L 7883921 intron CG32365 + chr3L_20_7880001 chr3L_7880001 RAL-340_100b 1829 chr3L 7886504 7886546 chr3L 7889036 7889071 Stalker4 35 2539 3.0 12.5 7.8 4.0 2567 chr3L 7886504 intron CG32365 + chr3L 7887788 intron CG32365 + chr3L 7889071 intron CG32365 + chr3L_35_7885001 chr3L_7885001 RAL-340_100b 1830 chr3L 7916806 7916860 chr3L 7926002 7926003 roo 25 9192 8.5 15.5 12.0 1.9 9197 chr3L 7916806 3` UTR syd - chr3L 7921404 intron syd - chr3L 7926003 3` UTR syd - chr3L_25_7920001 chr3L_7920001 RAL-340_100b 1831 chr3L 7985350 7985395 chr3L 7987704 7987738 NOF 19 2350 7.0 11.0 9.0 1.9 2388 chr3L 7985350 intron nmo + chr3L 7986544 intron nmo + chr3L 7987738 intron nmo + chr3L_19_7985001 chr3L_7985001 RAL-340_100b 1832 chr3L 7997595 7997620 chr3L 7997698 7997707 16 103 17.5 13.0 15.2 1.0 112 chr3L 7997595 intron nmo + chr3L 7997651 intron nmo + chr3L 7997707 intron nmo + chr3L_16_7995001 chr3L_7995001 RAL-340_100b 1833 chr3L 7997923 7997982 chr3L 7998066 7998066 18 135 13.5 5.0 9.2 1.8 143 chr3L 7997923 intron nmo + chr3L 7997994 intron nmo + chr3L 7998066 intron nmo + chr3L_18_7995001 chr3L_7995001 RAL-340_100b 1834 chr3L 8019729 8019737 chr3L 8024140 8024163 NOF 8 4427 3.0 9.0 6.0 1.1 4434 chr3L 8019729 intron nmo + chr3L 8021946 intron nmo + chr3L 8024163 intron nmo + chr3L_8_8020001 chr3L_8020001 RAL-340_100b 1835 chr3L 8062828 8062836 chr3L 8062932 8062940 4 104 21.0 9.0 15.0 0.2 112 chr3L 8062828 intergenic not near genes chr3L 8062884 intergenic not near genes chr3L 8062940 intergenic not near genes chr3L_4_8060001 chr3L_8060001 RAL-340_100b 1836 chr3L 8062846 8062860 chr3L 8062935 8062964 8 101 11.5 9.0 10.2 0.7 118 chr3L 8062846 intergenic not near genes chr3L 8062905 intergenic not near genes chr3L 8062964 intergenic not near genes chr3L_8_8060001 chr3L_8060001 RAL-340_100b 1837 chr3L 8064579 8064630 chr3L 8064812 8064859 20 237 13.5 2.0 7.8 2.3 280 chr3L 8064579 intron Ect4 + chr3L 8064719 intron Ect4 + chr3L 8064859 intron Ect4 + chr3L_20_8060001 chr3L_8060001 RAL-340_100b 1838 chr3L 8065609 8065627 chr3L 8065734 8065754 10 126 14.0 1.0 7.5 1.2 145 chr3L 8065609 intron Ect4 + chr3L 8065682 intron Ect4 + chr3L 8065754 intron Ect4 + chr3L_10_8065001 chr3L_8065001 RAL-340_100b 1839 chr3L 8149746 8149775 chr3L 8149877 8149906 8 129 3.5 20.0 11.8 0.6 160 chr3L 8149746 intron CG13676 - chr3L 8149826 intron CG13676 - chr3L 8149906 intron CG13676 - chr3L_8_8145001 chr3L_8145001 RAL-340_100b 1840 chr3L 8213777 8213780 chr3L 24821492 24821494 6 16607715 9.0 47.5 28.2 0.2 16607717 chr3L 8213777 intergenic CG8006 + chr3L 16517636 exon CG43373 - chr3L 24821494 intergenic not near genes chr3L_6_16515001 chr3L_16515001 RAL-340_100b 1841 chr3L 8224267 8224279 chr3L 8224376 8224389 11 110 26.5 8.5 17.5 0.6 122 chr3L 8224267 intergenic not near genes chr3L 8224328 intergenic not near genes chr3L 8224389 intergenic not near genes chr3L_11_8220001 chr3L_8220001 RAL-340_100b 1842 chr3L 8226952 8226997 chr3L 8227212 8227235 13 251 5.5 8.5 7.0 1.6 283 chr3L 8226952 intergenic not near genes chr3L 8227094 intergenic not near genes chr3L 8227235 intergenic not near genes chr3L_13_8225001 chr3L_8225001 RAL-340_100b 1843 chr3L 8233568 8233589 chr3L 8238855 8238876 Rt1a 18 5286 18.5 56.0 37.2 0.5 5308 chr3L 8233568 intron CG7213 - chr3L 8236222 intron CG7213 - chr3L 8238876 intron,intron CG7213 -,Dscam4 + chr3L_18_8235001 chr3L_8235001 RAL-340_100b 1844 chr3L 8248290 8248340 chr3L 8248405 8248455 22 110 6.0 8.0 7.0 2.8 165 chr3L 8248290 intron Dscam4 + chr3L 8248372 intron Dscam4 + chr3L 8248455 intron Dscam4 + chr3L_22_8245001 chr3L_8245001 RAL-340_100b 1845 chr3L 8295774 8295782 chr3L 8295957 8295965 4 182 22.5 11.0 16.8 0.2 191 chr3L 8295774 intergenic CG7201 - chr3L 8295870 intergenic not near genes chr3L 8295965 intergenic not near genes chr3L_4_8295001 chr3L_8295001 RAL-340_100b 1846 chr3L 8295784 8295808 chr3L 8295967 8295991 11 183 11.0 13.5 12.2 0.8 207 chr3L 8295784 intergenic CG7201 - chr3L 8295888 intergenic not near genes chr3L 8295991 intergenic not near genes chr3L_11_8295001 chr3L_8295001 RAL-340_100b 1847 chr3L 8295809 8295826 chr3L 8295955 8295997 8 175 6.0 9.5 7.8 0.9 188 chr3L 8295809 intergenic CG7201 - chr3L 8295903 intergenic not near genes chr3L 8295997 intergenic not near genes chr3L_8_8295001 chr3L_8295001 RAL-340_100b 1848 chr3L 8314759 8314761 chr3L 8314862 8314879 4 114 0.0 22.5 11.2 0.3 120 chr3L 8314759 intron CG7185 - chr3L 8314819 intron CG7185 - chr3L 8314879 intron CG7185 - chr3L_4_8310001 chr3L_8310001 RAL-340_100b 1849 chr3L 8314765 8314770 chr3L 8314841 8314888 6 104 0.0 14.0 7.0 0.8 123 chr3L 8314765 intron CG7185 - chr3L 8314826 intron CG7185 - chr3L 8314888 intron CG7185 - chr3L_6_8310001 chr3L_8310001 RAL-340_100b 1850 chr3L 8456452 8456483 chr3L 8456570 8456600 17 115 26.0 24.0 25.0 0.7 148 chr3L 8456452 intron Gug + chr3L 8456526 intron Gug + chr3L 8456600 intron Gug + chr3L_17_8455001 chr3L_8455001 RAL-340_100b 1851 chr3L 8481750 8481793 chr3L 8490934 8490962 roo 7 9176 8.0 9.0 8.5 0.7 9212 chr3L 8481750 intron CG43163 - chr3L 8486356 intron CG43163 - chr3L 8490962 intron CG43163 - chr3L_7_8485001 chr3L_8485001 RAL-340_100b 1852 chr3L 8498281 8498321 chr3L 8505773 8505812 blood 16 7487 10.5 11.0 10.8 1.4 7531 chr3L 8498281 intron CG43163 - chr3L 8502046 intron CG43163 - chr3L 8505812 intron CG43163 - chr3L_16_8500001 chr3L_8500001 RAL-340_100b 1853 chr3L 8763860 8763904 chr3L 13374965 13374967 6 4611098 1.0 58.5 29.8 0.2 4611107 chr3L 8763860 intron Fhos + chr3L 11069414 exon CG6310 - chr3L 13374967 intergenic not near genes chr3L_6_11065001 chr3L_11065001 RAL-340_100b 1854 chr3L 8773604 8773641 chr3L 8773720 8773752 13 113 9.0 13.0 11.0 1.1 148 chr3L 8773604 intron Fhos + chr3L 8773678 intron Fhos + chr3L 8773752 intron Fhos + chr3L_13_8770001 chr3L_8770001 RAL-340_100b 1855 chr3L 8773991 8774026 chr3L 8774149 8774184 18 155 5.5 8.5 7.0 2.2 193 chr3L 8773991 intron Fhos + chr3L 8774088 intron Fhos + chr3L 8774184 intron Fhos + chr3L_18_8770001 chr3L_8770001 RAL-340_100b 1856 chr3L 8791253 8791265 chr3L 8796698 8796710 I-element 8 5444 17.0 0.5 8.8 0.8 5457 chr3L 8791253 exon Fhos + chr3L 8793982 intron Fhos + chr3L 8796710 intron Fhos + chr3L_8_8790001 chr3L_8790001 RAL-340_100b 1857 chr3L 8791266 8791308 chr3L 8796697 8796752 I-element 8 5436 5.0 0.5 2.8 2.1 5486 chr3L 8791266 exon Fhos + chr3L 8794009 intron Fhos + chr3L 8796752 intron Fhos + chr3L_8_8790001 chr3L_8790001 RAL-340_100b 1858 chr3L 8832378 8832405 chr3L 8832496 8832523 7 117 20.5 8.5 14.5 0.5 145 chr3L 8832378 intron dally + chr3L 8832450 intron dally + chr3L 8832523 intron dally + chr3L_7_8830001 chr3L_8830001 RAL-340_100b 1859 chr3L 8832406 8832416 chr3L 8832524 8832534 4 118 17.0 16.0 16.5 0.2 128 chr3L 8832406 intron dally + chr3L 8832470 intron dally + chr3L 8832534 intron dally + chr3L_4_8830001 chr3L_8830001 RAL-340_100b 1860 chr3L 8832421 8832428 chr3L 8832518 8832546 5 114 11.0 14.0 12.5 0.4 125 chr3L 8832421 intron dally + chr3L 8832484 intron dally + chr3L 8832546 intron dally + chr3L_5_8830001 chr3L_8830001 RAL-340_100b 1861 chr3L 8949380 8949497 chr3L 8949495 8949592 6 108 0.0 0.0 0.0 6.0 212 chr3L 8949380 intron,intron CG43783 -,orb2 - chr3L 8949486 intron,intron CG43783 -,orb2 - chr3L 8949592 intron,intron CG43783 -,orb2 - chr3L_6_8945001 chr3L_8945001 RAL-340_100b 1862 chr3L 9003925 9003971 chr3L 9004035 9004047 9 105 3.0 4.0 3.5 2.0 122 chr3L 9003925 intergenic not near genes chr3L 9003986 intergenic not near genes chr3L 9004047 intergenic not near genes chr3L_9_9000001 chr3L_9000001 RAL-340_100b 1863 chr3L 9013668 9013690 chr3L 18417066 18417066 11 9403378 28.0 45.0 36.5 0.3 9403398 chr3L 9013668 intron Doc2 - chr3L 13715367 intron bru-3 - chr3L 18417066 intergenic not near genes chr3L_11_13715001 chr3L_13715001 RAL-340_100b 1864 chr3L 9013691 9013691 chr3L 18417066 18417066 11 9403375 27.5 45.0 36.2 0.3 9403375 chr3L 9013691 intron Doc2 - chr3L 13715378 intron bru-3 - chr3L 18417066 intergenic not near genes chr3L_11_13715001 chr3L_13715001 RAL-340_100b 1865 chr3L 9013693 9013693 chr3L 18417066 18417066 4 9403373 27.5 45.0 36.2 0.1 9403373 chr3L 9013693 intron Doc2 - chr3L 13715380 intron bru-3 - chr3L 18417066 intergenic not near genes chr3L_4_13715001 chr3L_13715001 RAL-340_100b 1866 chr3L 9028032 9028080 chr3L 9028159 9028208 15 124 4.5 13.5 9.0 1.5 176 chr3L 9028032 intergenic not near genes chr3L 9028120 intergenic not near genes chr3L 9028208 intergenic not near genes chr3L_15_9025001 chr3L_9025001 RAL-340_100b 1867 chr3L 9036269 9036288 chr3L 9036380 9036399 7 110 16.0 11.5 13.8 0.5 130 chr3L 9036269 intergenic not near genes chr3L 9036334 intergenic not near genes chr3L 9036399 intergenic not near genes chr3L_7_9035001 chr3L_9035001 RAL-340_100b 1868 chr3L 9076913 9076958 chr3L 9084498 9084520 412 13 7583 6.5 8.5 7.5 1.5 7607 chr3L 9076913 exon Tequila + chr3L 9080716 intron Tequila + chr3L 9084520 exon Tequila + chr3L_13_9080001 chr3L_9080001 RAL-340_100b 1869 chr3L 9113510 9113557 chr3L 9113612 9113649 29 98 22.5 15.0 18.8 1.5 139 chr3L 9113510 intron bol - chr3L 9113580 intron bol - chr3L 9113649 intron bol - chr3L_29_9110001 chr3L_9110001 RAL-340_100b 1870 chr3L 9118331 9118338 chr3L 9118436 9118443 5 105 26.0 28.5 27.2 0.2 112 chr3L 9118331 intron bol - chr3L 9118387 intron bol - chr3L 9118443 intron bol - chr3L_5_9115001 chr3L_9115001 RAL-340_100b 1871 chr3L 9118340 9118347 chr3L 9118430 9118452 5 100 24.0 23.5 23.8 0.2 112 chr3L 9118340 intron bol - chr3L 9118396 intron bol - chr3L 9118452 intron bol - chr3L_5_9115001 chr3L_9115001 RAL-340_100b 1872 chr3L 9128175 9128217 chr3L 9128285 9128285 16 107 9.0 10.5 9.8 1.5 110 chr3L 9128175 intron bol - chr3L 9128230 intron bol - chr3L 9128285 intron bol - chr3L_16_9125001 chr3L_9125001 RAL-340_100b 1873 chr3L 9130541 9130582 chr3L 9134318 9134368 412 18 3782 13.0 8.5 10.8 1.5 3827 chr3L 9130541 intergenic bol - chr3L 9132454 intergenic not near genes chr3L 9134368 intergenic Dhpr + chr3L_18_9130001 chr3L_9130001 RAL-340_100b 1874 chr3L 9164673 9164696 chr3L 9166165 9166181 hobo 21 1489 17.5 2.5 10.0 1.9 1508 chr3L 9164673 intron Rdl - chr3L 9165427 intron Rdl - chr3L 9166181 intron Rdl - chr3L_21_9165001 chr3L_9165001 RAL-340_100b 1875 chr3L 9164698 9164715 chr3L 9166164 9166170 hobo 13 1483 16.5 2.5 9.5 1.2 1472 chr3L 9164698 intron Rdl - chr3L 9165434 intron Rdl - chr3L 9166170 intron Rdl - chr3L_13_9165001 chr3L_9165001 RAL-340_100b 1876 chr3L 9219221 9219240 chr3L 9219918 9219937 jockey 10 693 26.5 13.5 20.0 0.5 716 chr3L 9219221 intergenic not near genes chr3L 9219579 intergenic not near genes chr3L 9219937 intergenic not near genes chr3L_10_9215001 chr3L_9215001 RAL-340_100b 1877 chr3L 9219243 9219252 chr3L 9219917 9219941 jockey 6 692 23.0 13.0 18.0 0.3 698 chr3L 9219243 intergenic not near genes chr3L 9219592 intergenic not near genes chr3L 9219941 intergenic not near genes chr3L_6_9215001 chr3L_9215001 RAL-340_100b 1878 chr3L 9219253 9219275 chr3L 9219916 9219931 jockey 16 679 16.5 12.0 14.2 1.1 678 chr3L 9219253 intergenic not near genes chr3L 9219592 intergenic not near genes chr3L 9219931 intergenic not near genes chr3L_16_9215001 chr3L_9215001 RAL-340_100b 1879 chr3L 9237475 9237486 chr3L 9237579 9237590 4 104 9.5 1.0 5.2 0.6 115 chr3L 9237475 intergenic not near genes chr3L 9237532 intergenic not near genes chr3L 9237590 intergenic not near genes chr3L_4_9235001 chr3L_9235001 RAL-340_100b 1880 chr3L 9270599 9270628 chr3L 9278379 9278408 roo 11 7776 8.0 10.0 9.0 1.1 7809 chr3L 9270599 intron GluRIB + chr3L 9274504 intron GluRIB + chr3L 9278408 exon GluRIB + chr3L_11_9270001 chr3L_9270001 RAL-340_100b 1881 chr3L 9270631 9270649 chr3L 9278377 9278394 roo 4 7755 5.5 9.5 7.5 0.5 7763 chr3L 9270631 intron GluRIB + chr3L 9274512 intron GluRIB + chr3L 9278394 exon GluRIB + chr3L_4_9270001 chr3L_9270001 RAL-340_100b 1882 chr3L 9302456 9302483 chr3L 9302566 9302593 6 108 6.0 1.0 3.5 1.3 137 chr3L 9302456 intergenic not near genes chr3L 9302524 intergenic not near genes chr3L 9302593 intergenic not near genes chr3L_6_9300001 chr3L_9300001 RAL-340_100b 1883 chr3L 758278 758278 chr3L 9307795 9307795 4 8549517 23.0 29.0 26.0 0.1 8549517 chr3L 758278 intergenic not near genes chr3L 5033036 intron Con - chr3L 9307795 intergenic not near genes chr3L_4_5030001 chr3L_5030001 RAL-340_100b 1884 chr3L 9307795 9307795 chr3L 18417066 18417066 37 9109271 24.0 45.0 34.5 1.0 9109271 chr3L 9307795 intergenic not near genes chr3L 13862430 intron CG8745 - chr3L 18417066 intergenic not near genes chr3L_37_13860001 chr3L_13860001 RAL-340_100b 1885 chr3L 9307795 9307795 chr3L 22908066 22908067 11 13600271 24.0 65.5 44.8 0.2 13600272 chr3L 9307795 intergenic not near genes chr3L 16107931 intron Zn72D - chr3L 22908067 intergenic not near genes chr3L_11_16105001 chr3L_16105001 RAL-340_100b 1886 chr3L 9307796 9307796 chr3L 18417066 18417066 29 9109270 24.5 45.0 34.8 0.8 9109270 chr3L 9307796 intergenic not near genes chr3L 13862431 intron CG8745 - chr3L 18417066 intergenic not near genes chr3L_29_13860001 chr3L_13860001 RAL-340_100b 1887 chr3L 9307796 9307796 chr3L 22908066 22908067 23 13600270 24.5 65.5 45.0 0.5 13600271 chr3L 9307796 intergenic not near genes chr3L 16107932 intron Zn72D - chr3L 22908067 intergenic not near genes chr3L_23_16105001 chr3L_16105001 RAL-340_100b 1888 chr3L 9313026 9313026 chr3L 11777678 11777678 5 2464652 46.0 21.0 33.5 0.1 2464652 chr3L 9313026 intergenic not near genes chr3L 10545352 intron A2bp1 + chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_5_10545001 chr3L_10545001 RAL-340_100b 1889 chr3L 9314007 9314058 chr3L 9314123 9314161 7 109 0.0 2.0 1.0 3.5 154 chr3L 9314007 intergenic not near genes chr3L 9314084 intergenic not near genes chr3L 9314161 intergenic not near genes chr3L_7_9310001 chr3L_9310001 RAL-340_100b 1890 chr3L 9359565 9359616 chr3L 9359681 9359730 15 115 8.0 6.5 7.2 1.8 165 chr3L 9359565 3` UTR CG32039 + chr3L 9359648 3` UTR CG32039 + chr3L 9359730 3` UTR CG32039 + chr3L_15_9355001 chr3L_9355001 RAL-340_100b 1891 chr3L 9419623 9419669 chr3L 9419719 9419760 24 91 8.5 5.5 7.0 3.0 137 chr3L 9419623 intron CG3967 - chr3L 9419692 intron CG3967 - chr3L 9419760 intron CG3967 - chr3L_24_9415001 chr3L_9415001 RAL-340_100b 1892 chr3L 9501677 9501731 chr3L 9502188 9502242 roo 19 509 8.0 5.5 6.8 2.4 565 chr3L 9501677 intron path - chr3L 9501960 intron path - chr3L 9502242 intron path - chr3L_19_9500001 chr3L_9500001 RAL-340_100b 1893 chr3L 9502603 9502644 chr3L 9502696 9502704 15 99 7.5 5.5 6.5 2.0 101 chr3L 9502603 intron path - chr3L 9502654 intron path - chr3L 9502704 intron path - chr3L_15_9500001 chr3L_9500001 RAL-340_100b 1894 chr3L 9533731 9533785 chr3L 9541316 9541344 412 6 7577 3.5 16.0 9.8 0.6 7613 chr3L 9533731 intergenic not near genes chr3L 9537538 intergenic not near genes chr3L 9541344 intergenic not near genes chr3L_6_9535001 chr3L_9535001 RAL-340_100b 1895 chr3L 9546656 9546657 chr3L 9546831 9546837 4 178 0.0 13.0 6.5 0.5 181 chr3L 9546656 intergenic not near genes chr3L 9546746 intergenic CG42673 + chr3L 9546837 intergenic CG42673 + chr3L_4_9545001 chr3L_9545001 RAL-340_100b 1896 chr3L 9546659 9546671 chr3L 9546824 9546845 5 174 0.0 12.5 6.2 0.7 186 chr3L 9546659 intergenic not near genes chr3L 9546752 intergenic CG42673 + chr3L 9546845 intergenic CG42673 + chr3L_5_9545001 chr3L_9545001 RAL-340_100b 1897 chr3L 9571875 9571932 chr3L 9572248 9572305 jockey 10 373 7.5 3.5 5.5 1.5 430 chr3L 9571875 intron CG42673 + chr3L 9572090 intron CG42673 + chr3L 9572305 intron CG42673 + chr3L_10_9570001 chr3L_9570001 RAL-340_100b 1898 chr3L 9575887 9575937 chr3L 9580987 9581042 jockey 21 5102 9.0 11.0 10.0 1.9 5155 chr3L 9575887 intron CG42673 + chr3L 9578464 intron CG42673 + chr3L 9581042 intron CG42673 + chr3L_21_9575001 chr3L_9575001 RAL-340_100b 1899 chr3L 9610090 9610145 chr3L 9610217 9610273 22 122 6.5 8.5 7.5 2.6 183 chr3L 9610090 intron CG3280 + chr3L 9610182 intron CG3280 + chr3L 9610273 intron CG3280 + chr3L_22_9610001 chr3L_9610001 RAL-340_100b 1900 chr3L 9646444 9646501 chr3L 9646594 9646644 11 146 13.5 0.0 6.8 1.4 200 chr3L 9646444 intron,intron fry -,CG33696 + chr3L 9646544 intron,intron fry -,CG33696 + chr3L 9646644 intron,intron fry -,CG33696 + chr3L_11_9645001 chr3L_9645001 RAL-340_100b 1901 chr3L 9665819 9665861 chr3L 9666060 9666102 18 240 6.5 13.5 10.0 1.6 283 chr3L 9665819 intron fry - chr3L 9665960 intron fry - chr3L 9666102 intron fry - chr3L_18_9665001 chr3L_9665001 RAL-340_100b 1902 chr3L 9675822 9675867 chr3L 9675930 9675975 16 103 9.5 8.5 9.0 1.6 153 chr3L 9675822 intron fry - chr3L 9675898 intron fry - chr3L 9675975 intron fry - chr3L_16_9675001 chr3L_9675001 RAL-340_100b 1903 chr3L 9699905 9699962 chr3L 9700017 9700074 26 108 6.0 6.0 6.0 3.7 169 chr3L 9699905 3` UTR UbcD4 + chr3L 9699990 3` UTR UbcD4 + chr3L 9700074 3` UTR UbcD4 + chr3L_26_9695001 chr3L_9695001 RAL-340_100b 1904 chr3L 9715574 9715627 chr3L 9715675 9715729 26 97 20.0 17.0 18.5 1.3 155 chr3L 9715574 intron vsg + chr3L 9715652 intron vsg + chr3L 9715729 intron vsg + chr3L_26_9715001 chr3L_9715001 RAL-340_100b 1905 chr3L 9733352 9733390 chr3L 9733456 9733494 25 102 8.5 18.0 13.2 1.8 142 chr3L 9733352 intron CG6749 - chr3L 9733423 intron CG6749 - chr3L 9733494 intron CG6749 - chr3L_25_9730001 chr3L_9730001 RAL-340_100b 1906 chr3L 9773179 9773218 chr3L 9773301 9773341 4 118 0.0 5.5 2.8 1.1 162 chr3L 9773179 intron CG8177 + chr3L 9773260 intron CG8177 + chr3L 9773341 intron CG8177 + chr3L_4_9770001 chr3L_9770001 RAL-340_100b 1907 chr3L 9775085 9775145 chr3L 9775191 9775251 32 103 4.5 7.0 5.8 4.7 166 chr3L 9775085 intron CG8177 + chr3L 9775168 intron CG8177 + chr3L 9775251 intron CG8177 + chr3L_32_9775001 chr3L_9775001 RAL-340_100b 1908 chr3L 9848001 9848018 chr3L 9848102 9848119 11 100 5.0 26.0 15.5 0.7 118 chr3L 9848001 intron RasGAP1 - chr3L 9848060 intron RasGAP1 - chr3L 9848119 intron RasGAP1 - chr3L_11_9845001 chr3L_9845001 RAL-340_100b 1909 chr3L 9918858 9918869 chr3L 9918977 9918989 9 120 17.0 4.5 10.8 0.8 131 chr3L 9918858 intron CG34356 + chr3L 9918924 intron CG34356 + chr3L 9918989 intron CG34356 + chr3L_9_9915001 chr3L_9915001 RAL-340_100b 1910 chr3L 9918870 9918914 chr3L 9918974 9919034 30 116 5.0 3.0 4.0 6.0 164 chr3L 9918870 intron CG34356 + chr3L 9918952 intron CG34356 + chr3L 9919034 intron CG34356 + chr3L_30_9915001 chr3L_9915001 RAL-340_100b 1911 chr3L 9929661 9929696 chr3L 9938448 9938490 roo 22 8798 12.5 19.0 15.8 1.3 8829 chr3L 9929661 intron CG34356 + chr3L 9934076 intron CG34356 + chr3L 9938490 intron CG34356 + chr3L_22_9930001 chr3L_9930001 RAL-340_100b 1912 chr3L 9941940 9941963 chr3L 9942041 9942064 9 100 5.0 12.0 8.5 0.9 124 chr3L 9941940 intron CG34356 + chr3L 9942002 intron CG34356 + chr3L 9942064 intron CG34356 + chr3L_9_9940001 chr3L_9940001 RAL-340_100b 1913 chr3L 10060092 10060102 chr3L 10067696 10067706 17.6 6 7604 31.0 8.5 19.8 0.3 7614 chr3L 10060092 intron dpr6 + chr3L 10063899 intron dpr6 + chr3L 10067706 intron dpr6 + chr3L_6_10060001 chr3L_10060001 RAL-340_100b 1914 chr3L 10060103 10060116 chr3L 10067692 10067720 17.6 13 7600 21.0 6.5 13.8 0.9 7617 chr3L 10060103 intron dpr6 + chr3L 10063912 intron dpr6 + chr3L 10067720 intron dpr6 + chr3L_13_10060001 chr3L_10060001 RAL-340_100b 1915 chr3L 10082541 10082582 chr3L 10082648 10082689 5 107 3.5 5.5 4.5 0.9 148 chr3L 10082541 intron dpr6 + chr3L 10082615 intron dpr6 + chr3L 10082689 intron dpr6 + chr3L_5_10080001 chr3L_10080001 RAL-340_100b 1916 chr3L 10128176 10128202 chr3L 10128262 10128263 11 94 9.5 5.5 7.5 1.3 87 chr3L 10128176 intron dpr6 + chr3L 10128220 intron dpr6 + chr3L 10128263 intron dpr6 + chr3L_11_10125001 chr3L_10125001 RAL-340_100b 1917 chr3L 10198608 10198655 chr3L 10198711 10198758 27 102 7.5 4.0 5.8 4.0 150 chr3L 10198608 intron ect - chr3L 10198683 intron ect - chr3L 10198758 intron ect - chr3L_27_10195001 chr3L_10195001 RAL-340_100b 1918 chr3L 10258904 10258928 chr3L 10259102 10259126 18 197 33.5 11.5 22.5 0.8 222 chr3L 10258904 intergenic not near genes chr3L 10259015 intergenic not near genes chr3L 10259126 intergenic not near genes chr3L_18_10255001 chr3L_10255001 RAL-340_100b 1919 chr3L 10258934 10258935 chr3L 10259116 10259125 4 187 30.5 15.5 23.0 0.2 191 chr3L 10258934 intergenic not near genes chr3L 10259030 intergenic not near genes chr3L 10259125 intergenic not near genes chr3L_4_10255001 chr3L_10255001 RAL-340_100b 1920 chr3L 10258936 10258954 chr3L 10259104 10259152 20 190 18.0 12.0 15.0 1.2 216 chr3L 10258936 intergenic not near genes chr3L 10259044 intergenic not near genes chr3L 10259152 intergenic not near genes chr3L_20_10255001 chr3L_10255001 RAL-340_100b 1921 chr3L 10272487 10272495 chr3L 10272619 10272627 4 132 47.5 14.0 30.8 0.1 140 chr3L 10272487 intergenic not near genes chr3L 10272557 intergenic not near genes chr3L 10272627 intergenic not near genes chr3L_4_10270001 chr3L_10270001 RAL-340_100b 1922 chr3L 10272496 10272500 chr3L 10272615 10272632 7 129 42.0 13.5 27.8 0.2 136 chr3L 10272496 intergenic not near genes chr3L 10272564 intergenic not near genes chr3L 10272632 intergenic not near genes chr3L_7_10270001 chr3L_10270001 RAL-340_100b 1923 chr3L 10272504 10272507 chr3L 10272612 10272614 5 122 35.0 13.0 24.0 0.2 110 chr3L 10272504 intergenic not near genes chr3L 10272559 intergenic not near genes chr3L 10272614 intergenic not near genes chr3L_5_10270001 chr3L_10270001 RAL-340_100b 1924 chr3L 10272508 10272531 chr3L 10272619 10272663 15 128 18.0 14.0 16.0 0.9 155 chr3L 10272508 intergenic not near genes chr3L 10272586 intergenic not near genes chr3L 10272663 intergenic not near genes chr3L_15_10270001 chr3L_10270001 RAL-340_100b 1925 chr3L 10298649 10298697 chr3L 10298761 10298809 12 111 1.0 3.0 2.0 4.0 160 chr3L 10298649 intergenic not near genes chr3L 10298729 intergenic not near genes chr3L 10298809 intergenic not near genes chr3L_12_10295001 chr3L_10295001 RAL-340_100b 1926 chr3L 10300038 10300071 chr3L 10300151 10300153 4 107 3.5 7.5 5.5 0.6 115 chr3L 10300038 intergenic not near genes chr3L 10300096 intergenic not near genes chr3L 10300153 intergenic not near genes chr3L_4_10300001 chr3L_10300001 RAL-340_100b 1927 chr3L 10308727 10308768 chr3L 10308829 10308870 29 100 7.5 9.5 8.5 3.1 143 chr3L 10308727 intergenic not near genes chr3L 10308798 intergenic not near genes chr3L 10308870 intergenic not near genes chr3L_29_10305001 chr3L_10305001 RAL-340_100b 1928 chr3L 10365624 10365673 chr3L 10366283 10366335 8 663 5.5 3.5 4.5 1.5 711 chr3L 10365624 5` UTR CR44327 + chr3L 10365980 5` UTR CR44327 + chr3L 10366335 5` UTR CR44327 + chr3L_8_10365001 chr3L_10365001 RAL-340_100b 1929 chr3L 10367493 10367518 chr3L 10367619 10367640 18 125 5.0 5.5 5.2 2.9 147 chr3L 10367493 intergenic CR44327 + chr3L 10367566 intergenic CR44327 + chr3L 10367640 intergenic CR44327 + chr3L_18_10365001 chr3L_10365001 RAL-340_100b 1930 chr3L 10368904 10368906 chr3L 22953316 22953318 4 12584412 14.5 25.5 20.0 0.2 12584414 chr3L 10368904 intergenic not near genes chr3L 16661111 intron Baldspot - chr3L 22953318 intergenic not near genes chr3L_4_16660001 chr3L_16660001 RAL-340_100b 1931 chr3L 10397287 10397326 chr3L 10397373 10397403 20 99 6.5 5.0 5.8 2.9 116 chr3L 10397287 intergenic not near genes chr3L 10397345 intergenic not near genes chr3L 10397403 intergenic not near genes chr3L_20_10395001 chr3L_10395001 RAL-340_100b 1932 chr3L 10414921 10414947 chr3L 10417318 10417344 Doc 9 2396 21.0 12.5 16.8 0.5 2423 chr3L 10414921 intergenic CG12362 + chr3L 10416132 intergenic not near genes chr3L 10417344 intergenic not near genes chr3L_9_10415001 chr3L_10415001 RAL-340_100b 1933 chr3L 10414948 10414970 chr3L 10417314 10417367 Doc 19 2388 13.5 10.0 11.8 1.5 2419 chr3L 10414948 intergenic CG12362 + chr3L 10416158 intergenic not near genes chr3L 10417367 intergenic not near genes chr3L_19_10415001 chr3L_10415001 RAL-340_100b 1934 chr3L 10553902 10553950 chr3L 10554604 10554652 7 702 6.5 7.0 6.8 0.9 750 chr3L 10553902 intron A2bp1 + chr3L 10554277 intron A2bp1 + chr3L 10554652 intron A2bp1 + chr3L_7_10550001 chr3L_10550001 RAL-340_100b 1935 chr3L 10600438 10600470 chr3L 10600540 10600577 7 103 4.5 4.5 4.5 1.3 139 chr3L 10600438 intergenic not near genes chr3L 10600508 intergenic not near genes chr3L 10600577 intergenic not near genes chr3L_7_10600001 chr3L_10600001 RAL-340_100b 1936 chr3L 10603637 10603706 chr3L 10603869 10603922 6 222 0.0 2.0 1.0 3.0 285 chr3L 10603637 intergenic not near genes chr3L 10603780 intergenic not near genes chr3L 10603922 intergenic not near genes chr3L_6_10600001 chr3L_10600001 RAL-340_100b 1937 chr3L 10621832 10621872 chr3L 10621944 10621984 10 112 4.0 7.5 5.8 1.5 152 chr3L 10621832 intergenic not near genes chr3L 10621908 intergenic not near genes chr3L 10621984 intergenic not near genes chr3L_10_10620001 chr3L_10620001 RAL-340_100b 1938 chr3L 10658066 10658073 chr3L 10658168 10658175 5 102 17.0 1.0 9.0 0.5 109 chr3L 10658066 intron CG32066 - chr3L 10658120 intron CG32066 - chr3L 10658175 intron CG32066 - chr3L_5_10655001 chr3L_10655001 RAL-340_100b 1939 chr3L 10658087 10658208 chr3L 10658162 10658359 22 141 0.5 1.0 0.8 12.2 272 chr3L 10658087 intron CG32066 - chr3L 10658223 intron CG32066 - chr3L 10658359 intron CG32066 - chr3L_22_10655001 chr3L_10655001 RAL-340_100b 1940 chr3L 10721970 10721993 chr3L 10722077 10722099 8 105 25.0 0.5 12.8 0.6 129 chr3L 10721970 intergenic not near genes chr3L 10722034 intergenic not near genes chr3L 10722099 intergenic not near genes chr3L_8_10720001 chr3L_10720001 RAL-340_100b 1941 chr3L 10739788 10739808 chr3L 10739897 10739901 7 105 7.5 0.0 3.8 1.5 113 chr3L 10739788 intergenic not near genes chr3L 10739844 intergenic not near genes chr3L 10739901 intergenic not near genes chr3L_7_10735001 chr3L_10735001 RAL-340_100b 1942 chr3L 10761672 10761713 chr3L 10761785 10761826 15 109 11.5 20.0 15.8 0.9 154 chr3L 10761672 intergenic not near genes chr3L 10761749 intergenic not near genes chr3L 10761826 intergenic not near genes chr3L_15_10760001 chr3L_10760001 RAL-340_100b 1943 chr3L 10912504 10912539 chr3L 10912606 10912639 12 99 0.0 0.0 0.0 12.0 135 chr3L 10912504 intergenic not near genes chr3L 10912572 intergenic not near genes chr3L 10912639 intergenic not near genes chr3L_12_10910001 chr3L_10910001 RAL-340_100b 1944 chr3L 10928164 10928174 chr3L 10928420 10928430 8 256 1.5 9.5 5.5 1.2 266 chr3L 10928164 intergenic not near genes chr3L 10928297 intergenic not near genes chr3L 10928430 intergenic not near genes chr3L_8_10925001 chr3L_10925001 RAL-340_100b 1945 chr3L 10956370 10956396 chr3L 10956487 10956513 6 118 6.0 3.5 4.8 1.0 143 chr3L 10956370 intergenic not near genes chr3L 10956442 intergenic not near genes chr3L 10956513 intergenic not near genes chr3L_6_10955001 chr3L_10955001 RAL-340_100b 1946 chr3L 10956979 10957034 chr3L 10957080 10957135 16 99 11.0 8.0 9.5 1.5 156 chr3L 10956979 intergenic not near genes chr3L 10957057 intergenic not near genes chr3L 10957135 intergenic not near genes chr3L_16_10955001 chr3L_10955001 RAL-340_100b 1947 chr3L 11018563 11018576 chr3L 11018674 11018687 7 111 2.5 12.5 7.5 0.8 124 chr3L 11018563 intergenic not near genes chr3L 11018625 intergenic not near genes chr3L 11018687 intergenic not near genes chr3L_7_11015001 chr3L_11015001 RAL-340_100b 1948 chr3L 11083482 11083528 chr3L 11083605 11083651 15 123 9.0 11.5 10.2 1.3 169 chr3L 11083482 exon JIL-1 - chr3L 11083566 intron JIL-1 - chr3L 11083651 intron JIL-1 - chr3L_15_11080001 chr3L_11080001 RAL-340_100b 1949 chr3L 11085662 11085699 chr3L 11085770 11085807 9 108 8.0 11.0 9.5 0.9 145 chr3L 11085662 exon JIL-1 - chr3L 11085734 intron JIL-1 - chr3L 11085807 intron JIL-1 - chr3L_9_11085001 chr3L_11085001 RAL-340_100b 1950 chr3L 11087016 11087090 chr3L 11088847 11088857 S-element 13 1809 0.5 8.5 4.5 2.4 1841 chr3L 11087016 intron JIL-1 - chr3L 11087936 intron JIL-1 - chr3L 11088857 intron JIL-1 - chr3L_13_11085001 chr3L_11085001 RAL-340_100b 1951 chr3L 11090038 11090090 chr3L 11090151 11090203 16 113 3.5 2.0 2.8 4.2 165 chr3L 11090038 intron JIL-1 - chr3L 11090120 intron JIL-1 - chr3L 11090203 intron JIL-1 - chr3L_16_11090001 chr3L_11090001 RAL-340_100b 1952 chr3L 11127900 11127950 chr3L 11128028 11128078 17 123 10.5 6.0 8.2 1.8 178 chr3L 11127900 intron CG42575 + chr3L 11127989 intron CG42575 + chr3L 11128078 intron CG42575 + chr3L_17_11125001 chr3L_11125001 RAL-340_100b 1953 chr3L 11135503 11135532 chr3L 11135758 11135787 17 254 8.5 3.0 5.8 2.5 284 chr3L 11135503 intergenic CG14143 + chr3L 11135645 intergenic CG14143 +,CG32082 + chr3L 11135787 intergenic CG32082 +,CG14143 + chr3L_17_11135001 chr3L_11135001 RAL-340_100b 1954 chr3L 11157707 11157765 chr3L 11157851 11157889 19 140 4.0 4.0 4.0 3.8 182 chr3L 11157707 intron CG32082 + chr3L 11157798 intron CG32082 + chr3L 11157889 intron CG32082 + chr3L_19_11155001 chr3L_11155001 RAL-340_100b 1955 chr3L 11264469 11264474 chr3L 11271426 11271440 17.6 5 6970 8.0 11.0 9.5 0.5 6971 chr3L 11264469 intergenic not near genes chr3L 11267954 intergenic not near genes chr3L 11271440 intergenic not near genes chr3L_5_11265001 chr3L_11265001 RAL-340_100b 1956 chr3L 11264475 11264476 chr3L 11271415 11271449 17.6 6 6966 7.5 5.0 6.2 0.8 6974 chr3L 11264475 intergenic not near genes chr3L 11267962 intergenic not near genes chr3L 11271449 intergenic not near genes chr3L_6_11265001 chr3L_11265001 RAL-340_100b 1957 chr3L 11279713 11279735 chr3L 11279799 11279821 9 87 15.5 10.0 12.8 0.7 108 chr3L 11279713 intergenic not near genes chr3L 11279767 intergenic not near genes chr3L 11279821 intergenic not near genes chr3L_9_11275001 chr3L_11275001 RAL-340_100b 1958 chr3L 11279737 11279744 chr3L 11279798 11279823 10 74 12.5 10.0 11.2 0.8 86 chr3L 11279737 intergenic not near genes chr3L 11279780 intergenic not near genes chr3L 11279823 intergenic not near genes chr3L_10_11275001 chr3L_11275001 RAL-340_100b 1959 chr3L 11285180 11285233 chr3L 11285351 11285410 10 174 5.5 0.0 2.8 2.6 230 chr3L 11285180 5` UTR CR45404 + chr3L 11285295 intergenic CR45404 + chr3L 11285410 intergenic CR45404 + chr3L_10_11285001 chr3L_11285001 RAL-340_100b 1960 chr3L 11329667 11329727 chr3L 11332896 11332939 jockey 31 3224 11.5 8.0 9.8 2.9 3272 chr3L 11329667 intergenic not near genes chr3L 11331303 intergenic not near genes chr3L 11332939 intergenic not near genes chr3L_31_11330001 chr3L_11330001 RAL-340_100b 1961 chr3L 11376092 11376139 chr3L 11376252 11376292 19 158 3.0 18.0 10.5 1.7 200 chr3L 11376092 intergenic not near genes chr3L 11376192 intergenic not near genes chr3L 11376292 intergenic not near genes chr3L_19_11375001 chr3L_11375001 RAL-340_100b 1962 chr3L 11386074 11386086 chr3L 11386176 11386178 6 99 15.5 15.0 15.2 0.4 104 chr3L 11386074 intergenic not near genes chr3L 11386126 intergenic not near genes chr3L 11386178 intergenic not near genes chr3L_6_11385001 chr3L_11385001 RAL-340_100b 1963 chr3L 11390321 11390335 chr3L 11390462 11390476 6 139 3.0 4.0 3.5 1.3 155 chr3L 11390321 intergenic not near genes chr3L 11390398 intergenic not near genes chr3L 11390476 intergenic not near genes chr3L_6_11390001 chr3L_11390001 RAL-340_100b 1964 chr3L 11396594 11396633 chr3L 11396706 11396743 5 112 4.5 0.0 2.2 1.6 149 chr3L 11396594 intergenic not near genes chr3L 11396668 intergenic not near genes chr3L 11396743 intergenic not near genes chr3L_5_11395001 chr3L_11395001 RAL-340_100b 1965 chr3L 11432881 11432939 chr3L 11432985 11433043 21 102 0.0 3.0 1.5 8.4 162 chr3L 11432881 intergenic not near genes chr3L 11432962 intergenic not near genes chr3L 11433043 intergenic not near genes chr3L_21_11430001 chr3L_11430001 RAL-340_100b 1966 chr3L 11435535 11435589 chr3L 11435729 11435768 13 189 9.5 5.5 7.5 1.5 233 chr3L 11435535 intergenic CG6149 -,CR44548 + chr3L 11435652 5` UTR CR44548 + chr3L 11435768 5` UTR CR44548 + chr3L_13_11435001 chr3L_11435001 RAL-340_100b 1967 chr3L 11436110 11436146 chr3L 11436521 11436558 14 419 7.0 9.0 8.0 1.6 448 chr3L 11436110 5` UTR CR44548 + chr3L 11436334 intergenic CR44548 + chr3L 11436558 intergenic CR44548 + chr3L_14_11435001 chr3L_11435001 RAL-340_100b 1968 chr3L 11465749 11465803 chr3L 11465855 11465868 10 90 6.5 12.5 9.5 1.0 119 chr3L 11465749 5` UTR CG6140 - chr3L 11465808 5` UTR CG6140 - chr3L 11465868 intergenic CG6140 - chr3L_10_11465001 chr3L_11465001 RAL-340_100b 1969 chr3L 11475600 11475640 chr3L 11475716 11475751 25 114 1.5 3.5 2.5 7.1 151 chr3L 11475600 intergenic Vha16-2 + chr3L 11475676 intergenic Vha16-2 + chr3L 11475751 intergenic Vha16-2 + chr3L_25_11475001 chr3L_11475001 RAL-340_100b 1970 chr3L 11493141 11493175 chr3L 11493251 11493295 12 119 6.5 8.0 7.2 1.5 154 chr3L 11493141 intron chrb + chr3L 11493218 intron chrb + chr3L 11493295 intron chrb + chr3L_12_11490001 chr3L_11490001 RAL-340_100b 1971 chr3L 11493176 11493185 chr3L 11493250 11493305 10 115 4.0 7.5 5.8 1.5 129 chr3L 11493176 intron chrb + chr3L 11493240 intron chrb + chr3L 11493305 intron chrb + chr3L_10_11490001 chr3L_11490001 RAL-340_100b 1972 chr3L 11551967 11552026 chr3L 11552069 11552120 11 100 3.0 3.0 3.0 2.8 153 chr3L 11551967 intron Mob2 - chr3L 11552044 intron Mob2 - chr3L 11552120 intron Mob2 - chr3L_11_11550001 chr3L_11550001 RAL-340_100b 1973 chr3L 11564808 11564812 chr3L 11572408 11572434 412 6 7619 5.0 20.5 12.8 0.4 7626 chr3L 11564808 exon CG33267 + chr3L 11568621 intron CG33267 + chr3L 11572434 exon CG33267 + chr3L_6_11565001 chr3L_11565001 RAL-340_100b 1974 chr3L 11579531 11579585 chr3L 11579662 11579716 20 130 6.5 2.0 4.2 3.8 185 chr3L 11579531 intergenic CG43390 - chr3L 11579624 intergenic CG43390 - chr3L 11579716 intergenic CG43390 - chr3L_20_11575001 chr3L_11575001 RAL-340_100b 1975 chr3L 11579715 11579716 chr3L 11580886 11580887 4 1171 5.5 18.5 12.0 0.3 1172 chr3L 11579715 intergenic CG43390 - chr3L 11580301 intergenic CG43390 - chr3L 11580887 exon CG43391 - chr3L_4_11580001 chr3L_11580001 RAL-340_100b 1976 chr3L 11673951 11673980 chr3L 11674050 11674073 17 100 14.5 0.5 7.5 2.0 122 chr3L 11673951 intron CG32085 - chr3L 11674012 intron CG32085 - chr3L 11674073 intron CG32085 - chr3L_17_11670001 chr3L_11670001 RAL-340_100b 1977 chr3L 11678071 11678123 chr3L 11678183 11678235 11 110 9.0 9.5 9.2 1.1 164 chr3L 11678071 intron CG32085 - chr3L 11678153 intron CG32085 - chr3L 11678235 intron CG32085 - chr3L_11_11675001 chr3L_11675001 RAL-340_100b 1978 chr3L 11723063 11723111 chr3L 11727883 11727925 Doc 34 4818 6.5 14.5 10.5 3.0 4862 chr3L 11723063 3` UTR Bmcp + chr3L 11725494 intron Bmcp + chr3L 11727925 3` UTR Bmcp + chr3L_34_11725001 chr3L_11725001 RAL-340_100b 1979 chr3L 11729651 11729702 chr3L 11729752 11729803 16 100 8.0 10.5 9.2 1.6 152 chr3L 11729651 exon CG32088 + chr3L 11729727 intron CG32088 + chr3L 11729803 exon CG32088 + chr3L_16_11725001 chr3L_11725001 RAL-340_100b 1980 chr3L 11743992 11744044 chr3L 11744125 11744177 11 132 4.5 3.0 3.8 2.3 185 chr3L 11743992 exon CG6024 - chr3L 11744084 intron CG6024 - chr3L 11744177 intron CG6024 - chr3L_11_11740001 chr3L_11740001 RAL-340_100b 1981 chr3L 11755885 11755941 chr3L 11756212 11756253 29 323 7.0 6.0 6.5 3.9 368 chr3L 11755885 intron CG6024 - chr3L 11756069 intron CG6024 - chr3L 11756253 intron CG6024 - chr3L_29_11755001 chr3L_11755001 RAL-340_100b 1982 chr3L 11757903 11757933 chr3L 11758025 11758055 9 122 18.0 0.0 9.0 0.9 152 chr3L 11757903 intron CG6024 - chr3L 11757979 intron CG6024 - chr3L 11758055 intron CG6024 - chr3L_9_11755001 chr3L_11755001 RAL-340_100b 1983 chr3L 11770966 11771018 chr3L 11771077 11771129 22 108 8.5 9.5 9.0 2.2 163 chr3L 11770966 exon Muc68D - chr3L 11771048 exon Muc68D - chr3L 11771129 exon Muc68D - chr3L_22_11770001 chr3L_11770001 RAL-340_100b 1984 chr3L 7749470 7749471 chr3L 11777678 11777678 32 4028207 35.5 21.0 28.2 1.1 4028208 chr3L 7749470 intron,3` UTR CG32373 +,CG13685 + chr3L 9763574 5` UTR CG8177 + chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_32_9760001 chr3L_9760001 RAL-340_100b 1985 chr3L 8095982 8095985 chr3L 11777678 11777678 roo 5 3681694 68.5 21.0 44.8 0.1 3681696 chr3L 8095982 intron Ect4 + chr3L 9936830 intron CG34356 + chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_5_9935001 chr3L_9935001 RAL-340_100b 1986 chr3L 9313026 9313055 chr3L 11777678 11777678 30 2464651 62.5 21.0 41.8 0.7 2464652 chr3L 9313026 intergenic not near genes chr3L 10545352 intron A2bp1 + chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_30_10545001 chr3L_10545001 RAL-340_100b 1987 chr3L 11777678 11777678 chr3L 12163305 12163307 56 385627 23.0 40.5 31.8 1.7 385629 chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L 11970492 exon Muc68E - chr3L 12163307 intron CG9760 - chr3L_56_11970001 chr3L_11970001 RAL-340_100b 1988 chr3L 11810545 11810555 chr3L 11810648 11810658 6 103 2.0 11.5 6.8 0.8 113 chr3L 11810545 intron CG42255 - chr3L 11810602 intron CG42255 - chr3L 11810658 exon CG42255 - chr3L_6_11810001 chr3L_11810001 RAL-340_100b 1989 chr3L 11811433 11811489 chr3L 11811536 11811554 26 100 4.0 7.5 5.8 3.8 121 chr3L 11811433 intron CG42255 - chr3L 11811494 intron CG42255 - chr3L 11811554 exon CG42255 - chr3L_26_11810001 chr3L_11810001 RAL-340_100b 1990 chr3L 11816785 11816809 chr3L 11816911 11816935 14 125 12.0 23.0 17.5 0.8 150 chr3L 11816785 3` UTR CG5946 - chr3L 11816860 3` UTR CG5946 - chr3L 11816935 3` UTR CG5946 - chr3L_14_11815001 chr3L_11815001 RAL-340_100b 1991 chr3L 11849307 11849341 chr3L 11849432 11849466 11 122 12.0 5.5 8.8 1.1 159 chr3L 11849307 intergenic not near genes chr3L 11849386 intergenic not near genes chr3L 11849466 intergenic not near genes chr3L_11_11845001 chr3L_11845001 RAL-340_100b 1992 chr3L 11850115 11850166 chr3L 11850235 11850269 26 117 6.0 1.5 3.8 5.4 154 chr3L 11850115 intergenic not near genes chr3L 11850192 intergenic CG44837 - chr3L 11850269 intergenic CG44837 - chr3L_26_11850001 chr3L_11850001 RAL-340_100b 1993 chr3L 11864534 11864582 chr3L 11865853 11865902 pogo 21 1316 7.5 11.0 9.2 2.1 1368 chr3L 11864534 intron CG44837 - chr3L 11865218 intron CG44837 - chr3L 11865902 intron CG44837 - chr3L_21_11865001 chr3L_11865001 RAL-340_100b 1994 chr3L 11887235 11887286 chr3L 11887357 11887413 11 121 3.5 2.5 3.0 2.8 178 chr3L 11887235 intron CG44837 - chr3L 11887324 intron,3` UTR CG44837 -,CG5897 - chr3L 11887413 intron,3` UTR CG44837 -,CG5897 - chr3L_11_11885001 chr3L_11885001 RAL-340_100b 1995 chr3L 11915257 11915297 chr3L 11915646 11915699 18 395 6.0 3.5 4.8 3.1 442 chr3L 11915257 intron CG44837 - chr3L 11915478 intron CG44837 - chr3L 11915699 intron CG44837 - chr3L_18_11915001 chr3L_11915001 RAL-340_100b 1996 chr3L 11919173 11919186 chr3L 20442554 20442567 4 8523381 19.5 39.5 29.5 0.1 8523394 chr3L 11919173 intron CG44837 - chr3L 16180870 intergenic not near genes chr3L 20442567 intron CG5910 + chr3L_4_16180001 chr3L_16180001 RAL-340_100b 1997 chr3L 11943470 11943520 chr3L 11943596 11943646 17 125 3.5 5.5 4.5 3.1 176 chr3L 11943470 3` UTR Rpt4R + chr3L 11943558 intergenic Rpt4R +,CG5883 - chr3L 11943646 3` UTR CG5883 - chr3L_17_11940001 chr3L_11940001 RAL-340_100b 1998 chr3L 12013889 12013937 chr3L 12014005 12014017 32 113 7.0 5.5 6.2 4.4 128 chr3L 12013889 intron rols - chr3L 12013953 intron rols - chr3L 12014017 intron rols - chr3L_32_12010001 chr3L_12010001 RAL-340_100b 1999 chr3L 12075402 12075460 chr3L 12075516 12075569 24 112 12.0 0.0 6.0 3.4 167 chr3L 12075402 intron Sema-5c - chr3L 12075486 intron Sema-5c - chr3L 12075569 intron Sema-5c - chr3L_24_12075001 chr3L_12075001 RAL-340_100b 2000 chr3L 12089062 12089108 chr3L 12089167 12089213 15 104 4.0 6.5 5.2 2.4 151 chr3L 12089062 exon CG17154 + chr3L 12089138 3` UTR CG17154 + chr3L 12089213 3` UTR CG17154 + chr3L_15_12085001 chr3L_12085001 RAL-340_100b 2001 chr3L 12092382 12092421 chr3L 12092479 12092523 9 100 3.5 4.5 4.0 1.8 141 chr3L 12092382 intergenic not near genes chr3L 12092452 intergenic not near genes chr3L 12092523 intergenic not near genes chr3L_9_12090001 chr3L_12090001 RAL-340_100b 2002 chr3L 12114055 12114084 chr3L 12114165 12114175 7 104 18.5 8.5 13.5 0.5 120 chr3L 12114055 intergenic not near genes chr3L 12114115 intergenic not near genes chr3L 12114175 intergenic not near genes chr3L_7_12110001 chr3L_12110001 RAL-340_100b 2003 chr3L 12165205 12165206 chr3L 12165291 12165312 7 98 19.0 14.0 16.5 0.4 107 chr3L 12165205 3` UTR Rh7 - chr3L 12165258 3` UTR Rh7 - chr3L 12165312 3` UTR Rh7 - chr3L_7_12165001 chr3L_12165001 RAL-340_100b 2004 chr3L 12165208 12165217 chr3L 12165314 12165323 7 106 16.0 24.5 20.2 0.3 115 chr3L 12165208 3` UTR Rh7 - chr3L 12165266 3` UTR Rh7 - chr3L 12165323 3` UTR Rh7 - chr3L_7_12165001 chr3L_12165001 RAL-340_100b 2005 chr3L 12177490 12177534 chr3L 12177641 12177648 16 147 6.5 7.5 7.0 2.0 158 chr3L 12177490 intergenic CAH2 + chr3L 12177569 intergenic CAH2 + chr3L 12177648 5` UTR CAH2 + chr3L_16_12175001 chr3L_12175001 RAL-340_100b 2006 chr3L 12208215 12208249 chr3L 12208318 12208352 28 98 26.0 18.5 22.2 1.2 137 chr3L 12208215 intron app - chr3L 12208284 intron app - chr3L 12208352 intron app - chr3L_28_12205001 chr3L_12205001 RAL-340_100b 2007 chr3L 12290228 12290232 chr3L 12290343 12290347 4 115 7.0 0.0 3.5 0.9 119 chr3L 12290228 intergenic CR45658 - chr3L 12290288 intergenic CR45658 - chr3L 12290347 intergenic CR45658 - chr3L_4_12290001 chr3L_12290001 RAL-340_100b 2008 chr3L 12304073 12304078 chr3L 12304174 12304179 4 101 12.0 12.5 12.2 0.3 106 chr3L 12304073 intergenic not near genes chr3L 12304126 intergenic not near genes chr3L 12304179 intergenic not near genes chr3L_4_12300001 chr3L_12300001 RAL-340_100b 2009 chr3L 12304080 12304114 chr3L 12304166 12304215 16 98 6.5 8.0 7.2 2.0 135 chr3L 12304080 intergenic not near genes chr3L 12304148 intergenic not near genes chr3L 12304215 intergenic not near genes chr3L_16_12300001 chr3L_12300001 RAL-340_100b 2010 chr3L 12369503 12369562 chr3L 12369702 12369762 13 194 5.0 0.0 2.5 3.7 259 chr3L 12369503 intron Ncc69 - chr3L 12369632 intron Ncc69 - chr3L 12369762 intron Ncc69 - chr3L_13_12365001 chr3L_12365001 RAL-340_100b 2011 chr3L 12381515 12381540 chr3L 12381618 12381642 6 102 7.0 3.5 5.2 1.0 127 chr3L 12381515 intron Ncc69 - chr3L 12381578 intron Ncc69 - chr3L 12381642 intron Ncc69 - chr3L_6_12380001 chr3L_12380001 RAL-340_100b 2012 chr3L 12446257 12446296 chr3L 12446351 12446359 18 92 6.5 3.5 5.0 3.0 102 chr3L 12446257 intergenic not near genes chr3L 12446308 intergenic not near genes chr3L 12446359 intergenic not near genes chr3L_18_12445001 chr3L_12445001 RAL-340_100b 2013 chr3L 12467234 12467282 chr3L 12467356 12467395 25 121 0.5 9.0 4.8 4.3 161 chr3L 12467234 intron eyg - chr3L 12467314 intron eyg - chr3L 12467395 intron eyg - chr3L_25_12465001 chr3L_12465001 RAL-340_100b 2014 chr3L 12565392 12565446 chr3L 12565494 12565545 29 103 7.5 8.0 7.8 3.3 153 chr3L 12565392 intron sowah - chr3L 12565468 intron sowah - chr3L 12565545 intron sowah - chr3L_29_12565001 chr3L_12565001 RAL-340_100b 2015 chr3L 12577059 12577091 chr3L 12577167 12577168 13 101 9.5 12.0 10.8 1.1 109 chr3L 12577059 intergenic not near genes chr3L 12577114 intergenic not near genes chr3L 12577168 intergenic not near genes chr3L_13_12575001 chr3L_12575001 RAL-340_100b 2016 chr3L 12578068 12578079 chr3L 12578140 12578192 4 102 6.0 0.5 3.2 1.0 124 chr3L 12578068 intergenic not near genes chr3L 12578130 intergenic not near genes chr3L 12578192 intergenic not near genes chr3L_4_12575001 chr3L_12575001 RAL-340_100b 2017 chr3L 12591610 12591640 chr3L 12591712 12591724 16 95 12.0 16.0 14.0 1.1 114 chr3L 12591610 intron ara + chr3L 12591667 intron ara + chr3L 12591724 intron ara + chr3L_16_12590001 chr3L_12590001 RAL-340_100b 2018 chr3L 12605703 12605745 chr3L 12605807 12605850 22 102 9.5 8.0 8.8 2.2 147 chr3L 12605703 intergenic not near genes chr3L 12605776 intergenic not near genes chr3L 12605850 intergenic not near genes chr3L_22_12605001 chr3L_12605001 RAL-340_100b 2019 chr3L 12610969 12611027 chr3L 12611240 12611298 15 267 1.5 5.0 3.2 3.6 329 chr3L 12610969 intron caup + chr3L 12611134 intron caup + chr3L 12611298 intron caup + chr3L_15_12610001 chr3L_12610001 RAL-340_100b 2020 chr3L 12626127 12626164 chr3L 12626261 12626298 17 132 4.5 3.0 3.8 3.5 171 chr3L 12626127 intergenic not near genes chr3L 12626212 intergenic not near genes chr3L 12626298 intergenic not near genes chr3L_17_12625001 chr3L_12625001 RAL-340_100b 2021 chr3L 12647925 12647975 chr3L 12648026 12648076 15 99 5.0 3.0 4.0 3.0 151 chr3L 12647925 5` UTR CR32111 + chr3L 12648000 5` UTR CR32111 + chr3L 12648076 5` UTR CR32111 + chr3L_15_12645001 chr3L_12645001 RAL-340_100b 2022 chr3L 12666901 12666953 chr3L 12667038 12667079 15 136 4.0 0.5 2.2 4.7 178 chr3L 12666901 intergenic not near genes chr3L 12666990 intergenic not near genes chr3L 12667079 intergenic not near genes chr3L_15_12665001 chr3L_12665001 RAL-340_100b 2023 chr3L 12728015 12728034 chr3L 12728124 12728143 7 109 7.0 6.0 6.5 0.9 128 chr3L 12728015 intergenic not near genes chr3L 12728079 intergenic not near genes chr3L 12728143 intergenic not near genes chr3L_7_12725001 chr3L_12725001 RAL-340_100b 2024 chr3L 12741400 12741453 chr3L 12741503 12741512 17 100 4.0 7.5 5.8 2.5 112 chr3L 12741400 3` UTR Ptp69D + chr3L 12741456 3` UTR Ptp69D + chr3L 12741512 3` UTR Ptp69D + chr3L_17_12740001 chr3L_12740001 RAL-340_100b 2025 chr3L 12801954 12802013 chr3L 12802055 12802114 32 96 10.0 6.0 8.0 3.6 160 chr3L 12801954 intron Atg1 - chr3L 12802034 intron Atg1 - chr3L 12802114 intron Atg1 - chr3L_32_12800001 chr3L_12800001 RAL-340_100b 2026 chr3L 12857970 12857994 chr3L 12858090 12858094 10 117 4.5 5.5 5.0 1.7 124 chr3L 12857970 3` UTR CG32107 - chr3L 12858032 3` UTR CG32107 - chr3L 12858094 3` UTR CG32107 - chr3L_10_12855001 chr3L_12855001 RAL-340_100b 2027 chr3L 12874900 12874915 chr3L 12877217 12877232 jockey 10 2317 19.5 11.0 15.2 0.6 2332 chr3L 12874900 intergenic not near genes chr3L 12876066 intergenic not near genes chr3L 12877232 intergenic not near genes chr3L_10_12875001 chr3L_12875001 RAL-340_100b 2028 chr3L 12874916 12874958 chr3L 12877216 12877265 jockey 22 2312 10.5 10.5 10.5 1.9 2349 chr3L 12874916 intergenic not near genes chr3L 12876090 intergenic not near genes chr3L 12877265 intergenic not near genes chr3L_22_12875001 chr3L_12875001 RAL-340_100b 2029 chr3L 12894783 12894812 chr3L 12894886 12894915 13 101 12.0 13.0 12.5 1.0 132 chr3L 12894783 intergenic CG14118 + chr3L 12894849 intergenic CG14118 + chr3L 12894915 intergenic CG14118 + chr3L_13_12890001 chr3L_12890001 RAL-340_100b 2030 chr3L 12898137 12898192 chr3L 12898484 12898539 24 345 4.5 13.0 8.8 2.4 402 chr3L 12898137 intergenic not near genes chr3L 12898338 intergenic not near genes chr3L 12898539 intergenic not near genes chr3L_24_12895001 chr3L_12895001 RAL-340_100b 2031 chr3L 12919251 12919311 chr3L 12924760 12924770 Rt1c 8 5490 2.0 6.5 4.2 1.5 5519 chr3L 12919251 intergenic not near genes chr3L 12922010 intergenic not near genes chr3L 12924770 intergenic not near genes chr3L_8_12920001 chr3L_12920001 RAL-340_100b 2032 chr3L 12941957 12941985 chr3L 12942089 12942117 19 131 11.0 11.5 11.2 1.6 160 chr3L 12941957 intergenic not near genes chr3L 12942037 intergenic not near genes chr3L 12942117 intergenic not near genes chr3L_19_12940001 chr3L_12940001 RAL-340_100b 2033 chr3L 12941990 12942000 chr3L 12942087 12942132 6 122 8.0 10.0 9.0 0.6 142 chr3L 12941990 intergenic not near genes chr3L 12942061 intergenic not near genes chr3L 12942132 intergenic not near genes chr3L_6_12940001 chr3L_12940001 RAL-340_100b 2034 chr3L 12957770 12957783 chr3L 12962270 12962290 copia 9 4505 17.5 14.5 16.0 0.5 4520 chr3L 12957770 intergenic not near genes chr3L 12960030 intergenic not near genes chr3L 12962290 intergenic not near genes chr3L_9_12960001 chr3L_12960001 RAL-340_100b 2035 chr3L 12957788 12957815 chr3L 12962289 12962319 copia 14 4505 12.5 20.0 16.2 0.8 4531 chr3L 12957788 intergenic not near genes chr3L 12960054 intergenic not near genes chr3L 12962319 intergenic not near genes chr3L_14_12960001 chr3L_12960001 RAL-340_100b 2036 chr3L 12966120 12966163 chr3L 12966220 12966277 13 108 8.5 5.5 7.0 1.6 157 chr3L 12966120 intron Or69a - chr3L 12966198 intron Or69a - chr3L 12966277 intron Or69a - chr3L_13_12965001 chr3L_12965001 RAL-340_100b 2037 chr3L 13007667 13007947 chr3L 13007771 13008065 44 110 5.5 0.0 2.8 11.6 398 chr3L 13007667 exon CG11263 + chr3L 13007866 3` UTR CG11263 + chr3L 13008065 intergenic CG11263 +,CG14117 + chr3L_44_13005001 chr3L_13005001 RAL-340_100b 2038 chr3L 13008415 13008421 chr3L 13008520 13008522 4 104 46.5 44.5 45.5 0.1 107 chr3L 13008415 5` UTR CG14117 + chr3L 13008468 5` UTR CG14117 + chr3L 13008522 5` UTR CG14117 + chr3L_4_13005001 chr3L_13005001 RAL-340_100b 2039 chr3L 13069545 13069553 chr3L 13069649 13069657 4 104 7.0 13.5 10.2 0.4 112 chr3L 13069545 intergenic not near genes chr3L 13069601 intergenic not near genes chr3L 13069657 intergenic not near genes chr3L_4_13065001 chr3L_13065001 RAL-340_100b 2040 chr3L 13069554 13069588 chr3L 13069646 13069649 7 96 2.0 12.5 7.2 0.9 95 chr3L 13069554 intergenic not near genes chr3L 13069602 intergenic not near genes chr3L 13069649 intergenic not near genes chr3L_7_13065001 chr3L_13065001 RAL-340_100b 2041 chr3L 13095818 13095829 chr3L 13095910 13095942 4 108 7.5 0.5 4.0 0.8 124 chr3L 13095818 intergenic not near genes chr3L 13095880 intergenic not near genes chr3L 13095942 intergenic not near genes chr3L_4_13095001 chr3L_13095001 RAL-340_100b 2042 chr3L 13100882 13100931 chr3L 13100986 13101025 17 100 8.5 5.5 7.0 2.1 143 chr3L 13100882 intergenic not near genes chr3L 13100954 intergenic not near genes chr3L 13101025 intergenic CR44554 - chr3L_17_13100001 chr3L_13100001 RAL-340_100b 2043 chr3L 13144099 13144149 chr3L 13144201 13144250 31 99 8.5 5.0 6.8 4.0 151 chr3L 13144099 intergenic not near genes chr3L 13144174 intergenic not near genes chr3L 13144250 intergenic not near genes chr3L_31_13140001 chr3L_13140001 RAL-340_100b 2044 chr3L 13159269 13159296 chr3L 13159373 13159392 8 103 6.0 7.0 6.5 1.1 123 chr3L 13159269 intergenic not near genes chr3L 13159330 intergenic not near genes chr3L 13159392 intergenic not near genes chr3L_8_13155001 chr3L_13155001 RAL-340_100b 2045 chr3L 13182436 13182471 chr3L 13182530 13182569 5 100 2.5 3.5 3.0 1.2 133 chr3L 13182436 intergenic not near genes chr3L 13182502 intergenic not near genes chr3L 13182569 intergenic not near genes chr3L_5_13180001 chr3L_13180001 RAL-340_100b 2046 chr3L 13205215 13205267 chr3L 13205326 13205378 22 108 11.0 4.5 7.8 2.5 163 chr3L 13205215 intergenic not near genes chr3L 13205296 intergenic not near genes chr3L 13205378 intergenic not near genes chr3L_22_13205001 chr3L_13205001 RAL-340_100b 2047 chr3L 13217494 13217505 chr3L 13217594 13217620 8 111 4.5 5.5 5.0 1.3 126 chr3L 13217494 5` UTR CR43914 + chr3L 13217557 intergenic CR43914 + chr3L 13217620 intergenic CR43914 + chr3L_8_13215001 chr3L_13215001 RAL-340_100b 2048 chr3L 13219043 13219093 chr3L 13219698 13219755 10 660 16.0 18.5 17.2 0.5 712 chr3L 13219043 intergenic CR45098 - chr3L 13219399 intergenic not near genes chr3L 13219755 intergenic not near genes chr3L_10_13215001 chr3L_13215001 RAL-340_100b 2049 chr3L 13235740 13235775 chr3L 13235833 13235884 20 101 15.0 4.5 9.8 1.9 144 chr3L 13235740 intron caps + chr3L 13235812 intron caps + chr3L 13235884 intron caps + chr3L_20_13235001 chr3L_13235001 RAL-340_100b 2050 chr3L 13255524 13255540 chr3L 13255630 13255634 9 103 9.5 4.5 7.0 1.1 110 chr3L 13255524 intron caps + chr3L 13255579 intron caps + chr3L 13255634 intron caps + chr3L_9_13255001 chr3L_13255001 RAL-340_100b 2051 chr3L 13267260 13267317 chr3L 13267398 13267455 31 133 11.0 3.0 7.0 3.9 195 chr3L 13267260 intron caps + chr3L 13267358 intron caps + chr3L 13267455 intron caps + chr3L_31_13265001 chr3L_13265001 RAL-340_100b 2052 chr3L 13315831 13315862 chr3L 13315943 13315974 4 112 4.0 8.5 6.2 0.6 143 chr3L 13315831 intergenic not near genes chr3L 13315902 intergenic not near genes chr3L 13315974 intergenic not near genes chr3L_4_13315001 chr3L_13315001 RAL-340_100b 2053 chr3L 13337144 13337157 chr3L 13337260 13337273 8 115 0.5 4.0 2.2 2.5 129 chr3L 13337144 intergenic not near genes chr3L 13337208 intergenic not near genes chr3L 13337273 intergenic not near genes chr3L_8_13335001 chr3L_13335001 RAL-340_100b 2054 chr3L 13338265 13338314 chr3L 13338386 13338435 20 116 5.5 14.5 10.0 1.8 170 chr3L 13338265 intergenic not near genes chr3L 13338350 intergenic not near genes chr3L 13338435 intergenic not near genes chr3L_20_13335001 chr3L_13335001 RAL-340_100b 2055 chr3L 13400517 13400545 chr3L 13400618 13400646 10 100 3.5 13.0 8.2 1.1 129 chr3L 13400517 intron sens - chr3L 13400582 intron sens - chr3L 13400646 intron sens - chr3L_10_13400001 chr3L_13400001 RAL-340_100b 2056 chr3L 13525133 13525137 chr3L 13532954 13532958 roo 6 7821 32.5 10.5 21.5 0.3 7825 chr3L 13525133 intergenic not near genes chr3L 13529046 intergenic not near genes chr3L 13532958 intergenic not near genes chr3L_6_13525001 chr3L_13525001 RAL-340_100b 2057 chr3L 13525138 13525189 chr3L 13532952 13533000 roo 38 7817 9.0 8.5 8.8 3.9 7862 chr3L 13525138 intergenic not near genes chr3L 13529069 intergenic not near genes chr3L 13533000 intergenic not near genes chr3L_38_13525001 chr3L_13525001 RAL-340_100b 2058 chr3L 13574608 13574615 chr3L 13580144 13580151 Rt1c 4 5536 18.5 21.0 19.8 0.2 5543 chr3L 13574608 intron bru-3 - chr3L 13577380 intron bru-3 - chr3L 13580151 intron bru-3 - chr3L_4_13575001 chr3L_13575001 RAL-340_100b 2059 chr3L 13629502 13629511 chr3L 13629638 13629647 4 136 21.5 13.5 17.5 0.2 145 chr3L 13629502 intron bru-3 - chr3L 13629574 intron bru-3 - chr3L 13629647 intron bru-3 - chr3L_4_13625001 chr3L_13625001 RAL-340_100b 2060 chr3L 13629513 13629541 chr3L 13629649 13629677 14 133 12.0 14.0 13.0 1.0 164 chr3L 13629513 intron bru-3 - chr3L 13629595 intron bru-3 - chr3L 13629677 intron bru-3 - chr3L_14_13625001 chr3L_13625001 RAL-340_100b 2061 chr3L 13646629 13646684 chr3L 13646741 13646772 18 106 4.0 17.5 10.8 1.5 143 chr3L 13646629 intron bru-3 - chr3L 13646700 intron bru-3 - chr3L 13646772 intron bru-3 - chr3L_18_13645001 chr3L_13645001 RAL-340_100b 2062 chr3L 13677505 13677554 chr3L 13677606 13677654 15 102 9.0 6.5 7.8 1.7 149 chr3L 13677505 intron bru-3 - chr3L 13677580 intron bru-3 - chr3L 13677654 intron bru-3 - chr3L_15_13675001 chr3L_13675001 RAL-340_100b 2063 chr3L 13686036 13686089 chr3L 13686133 13686185 26 90 14.0 8.0 11.0 2.2 149 chr3L 13686036 intron bru-3 - chr3L 13686110 intron bru-3 - chr3L 13686185 intron bru-3 - chr3L_26_13685001 chr3L_13685001 RAL-340_100b 2064 chr3L 13740010 13740048 chr3L 13740127 13740143 11 112 4.0 10.5 7.2 1.3 133 chr3L 13740010 intron bru-3 - chr3L 13740076 intron bru-3 - chr3L 13740143 intron bru-3 - chr3L_11_13740001 chr3L_13740001 RAL-340_100b 2065 chr3L 13804531 13804572 chr3L 13822834 13822882 roo 9 18308 3.5 5.5 4.5 1.6 18351 chr3L 13804531 intergenic not near genes chr3L 13813706 intergenic not near genes chr3L 13822882 intergenic not near genes chr3L_9_13810001 chr3L_13810001 RAL-340_100b 2066 chr3L 13833963 13834009 chr3L 13834089 13834090 11 126 10.5 7.5 9.0 1.1 127 chr3L 13833963 intergenic not near genes chr3L 13834026 intergenic not near genes chr3L 13834090 intergenic not near genes chr3L_11_13830001 chr3L_13830001 RAL-340_100b 2067 chr3L 13884355 13884376 chr3L 13884471 13884492 17 116 25.0 10.5 17.8 0.9 137 chr3L 13884355 intron dysc - chr3L 13884424 intron dysc - chr3L 13884492 intron dysc - chr3L_17_13880001 chr3L_13880001 RAL-340_100b 2068 chr3L 13901546 13901551 chr3L 13901648 13901653 5 102 12.0 21.0 16.5 0.3 107 chr3L 13901546 intron dysc - chr3L 13901600 intron dysc - chr3L 13901653 intron dysc - chr3L_5_13900001 chr3L_13900001 RAL-340_100b 2069 chr3L 13901555 13901586 chr3L 13901647 13901653 37 98 10.0 19.5 14.8 2.3 98 chr3L 13901555 intron dysc - chr3L 13901604 intron dysc - chr3L 13901653 intron dysc - chr3L_37_13900001 chr3L_13900001 RAL-340_100b 2070 chr3L 13901590 13901597 chr3L 13901662 13901699 7 98 9.0 31.0 20.0 0.3 109 chr3L 13901590 intron dysc - chr3L 13901644 intron dysc - chr3L 13901699 5` UTR dysc - chr3L_7_13900001 chr3L_13900001 RAL-340_100b 2071 chr3L 13920394 13920432 chr3L 13920499 13920537 9 104 1.0 2.5 1.8 3.2 143 chr3L 13920394 intron Rgl - chr3L 13920466 intron Rgl - chr3L 13920537 intron Rgl - chr3L_9_13920001 chr3L_13920001 RAL-340_100b 2072 chr3L 13954448 13954451 chr3L 13954552 13954555 4 104 3.5 11.0 7.2 0.5 107 chr3L 13954448 intron CG32137 + chr3L 13954502 intron CG32137 + chr3L 13954555 intron CG32137 + chr3L_4_13950001 chr3L_13950001 RAL-340_100b 2073 chr3L 14123736 14123739 chr3L 14123847 14123850 4 110 7.5 9.5 8.5 0.4 114 chr3L 14123736 intron Sox21b - chr3L 14123793 intron Sox21b - chr3L 14123850 intron Sox21b - chr3L_4_14120001 chr3L_14120001 RAL-340_100b 2074 chr3L 14194697 14194742 chr3L 14194798 14194843 6 100 3.5 8.0 5.8 0.9 146 chr3L 14194697 intron nuf + chr3L 14194770 intron nuf + chr3L 14194843 intron nuf + chr3L_6_14190001 chr3L_14190001 RAL-340_100b 2075 chr3L 14235845 14235900 chr3L 14235956 14236011 24 109 3.5 4.0 3.8 5.0 166 chr3L 14235845 5` UTR CG34244 - chr3L 14235928 5` UTR CG34244 - chr3L 14236011 intergenic CG34244 - chr3L_24_14235001 chr3L_14235001 RAL-340_100b 2076 chr3L 14245549 14245593 chr3L 14245664 14245712 1360 11 116 5.5 8.5 7.0 1.4 163 chr3L 14245549 3` UTR CR44561 - chr3L 14245630 3` UTR CR44561 - chr3L 14245712 intergenic CR44561 -,CR44560 + chr3L_11_14245001 chr3L_14245001 RAL-340_100b 2077 chr3L 14267352 14267393 chr3L 14271814 14271833 F-element 13 4454 9.5 6.5 8.0 1.4 4481 chr3L 14267352 intergenic not near genes chr3L 14269592 intergenic not near genes chr3L 14271833 intergenic not near genes chr3L_13_14265001 chr3L_14265001 RAL-340_100b 2078 chr3L 14282569 14282606 chr3L 14282666 14282686 16 101 6.0 7.5 6.8 2.1 117 chr3L 14282569 intron fz + chr3L 14282628 intron fz + chr3L 14282686 intron fz + chr3L_16_14280001 chr3L_14280001 RAL-340_100b 2079 chr3L 14295966 14296014 chr3L 14296466 14296525 roo 22 501 3.5 8.0 5.8 3.2 559 chr3L 14295966 intron fz + chr3L 14296246 intron fz + chr3L 14296525 intron fz + chr3L_22_14295001 chr3L_14295001 RAL-340_100b 2080 chr3L 14298331 14298337 chr3L 14298401 14298433 5 93 6.5 9.0 7.8 0.6 102 chr3L 14298331 intron fz + chr3L 14298382 intron fz + chr3L 14298433 intron fz + chr3L_5_14295001 chr3L_14295001 RAL-340_100b 2081 chr3L 14298338 14298340 chr3L 14298396 14298441 4 77 6.0 7.5 6.8 0.5 103 chr3L 14298338 intron fz + chr3L 14298390 intron fz + chr3L 14298441 intron fz + chr3L_4_14295001 chr3L_14295001 RAL-340_100b 2082 chr3L 14302920 14302962 chr3L 14303031 14303073 16 105 1.5 19.5 10.5 1.4 153 chr3L 14302920 intron fz + chr3L 14302996 intron fz + chr3L 14303073 intron fz + chr3L_16_14300001 chr3L_14300001 RAL-340_100b 2083 chr3L 14312014 14312020 chr3L 14316843 14316859 X-element 4 4835 11.0 6.5 8.8 0.4 4845 chr3L 14312014 exon fz + chr3L 14314436 intron fz + chr3L 14316859 intron fz + chr3L_4_14310001 chr3L_14310001 RAL-340_100b 2084 chr3L 14312023 14312055 chr3L 14316839 14316861 X-element 11 4825 5.5 5.5 5.5 1.7 4838 chr3L 14312023 exon fz + chr3L 14314442 intron fz + chr3L 14316861 intron fz + chr3L_11_14310001 chr3L_14310001 RAL-340_100b 2085 chr3L 14341400 14341436 chr3L 14341550 14341592 12 159 1.5 4.5 3.0 3.0 192 chr3L 14341400 intron fz + chr3L 14341496 intron fz + chr3L 14341592 intron fz + chr3L_12_14340001 chr3L_14340001 RAL-340_100b 2086 chr3L 14424188 14424201 chr3L 14424318 14424327 5 129 13.0 13.5 13.2 0.4 139 chr3L 14424188 intron bbg - chr3L 14424258 intron bbg - chr3L 14424327 intron bbg - chr3L_5_14420001 chr3L_14420001 RAL-340_100b 2087 chr3L 14424203 14424238 chr3L 14424315 14424367 21 127 4.0 13.0 8.5 2.2 164 chr3L 14424203 intron bbg - chr3L 14424285 intron bbg - chr3L 14424367 intron bbg - chr3L_21_14420001 chr3L_14420001 RAL-340_100b 2088 chr3L 14441570 14441623 chr3L 14441744 14441797 26 172 5.5 7.0 6.2 3.6 227 chr3L 14441570 intron bbg - chr3L 14441684 intron bbg - chr3L 14441797 intron bbg - chr3L_26_14440001 chr3L_14440001 RAL-340_100b 2089 chr3L 14444699 14444718 chr3L 14444899 14444918 12 200 13.5 8.5 11.0 1.0 219 chr3L 14444699 intron bbg - chr3L 14444808 intron bbg - chr3L 14444918 intron bbg - chr3L_12_14440001 chr3L_14440001 RAL-340_100b 2090 chr3L 14444721 14444748 chr3L 14444897 14444948 15 197 5.0 8.5 6.8 1.9 227 chr3L 14444721 intron bbg - chr3L 14444834 intron bbg - chr3L 14444948 intron bbg - chr3L_15_14440001 chr3L_14440001 RAL-340_100b 2091 chr3L 14455344 14455397 chr3L 14455450 14455501 10 97 4.5 0.0 2.2 3.1 157 chr3L 14455344 intron bbg - chr3L 14455422 intron bbg - chr3L 14455501 intron bbg - chr3L_10_14455001 chr3L_14455001 RAL-340_100b 2092 chr3L 14468432 14468474 chr3L 14473663 14473704 copia 10 5229 7.5 7.0 7.2 1.2 5272 chr3L 14468432 intron bbg - chr3L 14471068 intron bbg - chr3L 14473704 intron bbg - chr3L_10_14470001 chr3L_14470001 RAL-340_100b 2093 chr3L 14522074 14522128 chr3L 14522198 14522252 15 123 4.0 13.0 8.5 1.6 178 chr3L 14522074 intron bbg - chr3L 14522163 intron bbg - chr3L 14522252 intron bbg - chr3L_15_14520001 chr3L_14520001 RAL-340_100b 2094 chr3L 14546806 14546810 chr3L 14546931 14546936 6 126 0.0 13.0 6.5 0.8 130 chr3L 14546806 intron CG9238 - chr3L 14546871 intron CG9238 - chr3L 14546936 intron CG9238 - chr3L_6_14545001 chr3L_14545001 RAL-340_100b 2095 chr3L 14546811 14546817 chr3L 14546922 14546943 7 124 0.0 10.0 5.0 1.2 132 chr3L 14546811 intron CG9238 - chr3L 14546877 intron CG9238 - chr3L 14546943 intron CG9238 - chr3L_7_14545001 chr3L_14545001 RAL-340_100b 2096 chr3L 14565723 14565776 chr3L 14565839 14565892 14 116 6.0 7.0 6.5 1.9 169 chr3L 14565723 intergenic not near genes chr3L 14565808 intergenic not near genes chr3L 14565892 intergenic not near genes chr3L_14_14565001 chr3L_14565001 RAL-340_100b 2097 chr3L 14633764 14633818 chr3L 14633885 14633939 13 120 8.5 5.0 6.8 1.7 175 chr3L 14633764 intron dlp + chr3L 14633852 intron dlp + chr3L 14633939 intron dlp + chr3L_13_14630001 chr3L_14630001 RAL-340_100b 2098 chr3L 14654694 14654706 chr3L 14654806 14654818 9 111 11.0 5.0 8.0 1.0 124 chr3L 14654694 intron dlp + chr3L 14654756 intron dlp + chr3L 14654818 intron dlp + chr3L_9_14650001 chr3L_14650001 RAL-340_100b 2099 chr3L 14721170 14721204 chr3L 14723028 14723072 Rt1c 16 1864 8.5 11.0 9.8 1.5 1902 chr3L 14721170 intron ome + chr3L 14722121 intron ome + chr3L 14723072 intron ome + chr3L_16_14720001 chr3L_14720001 RAL-340_100b 2100 chr3L 14725580 14725631 chr3L 14728608 14728628 Doc 18 3022 5.0 3.5 4.2 3.5 3048 chr3L 14725580 intron ome + chr3L 14727104 intron ome + chr3L 14728628 intron ome + chr3L_18_14725001 chr3L_14725001 RAL-340_100b 2101 chr3L 14912162 14912215 chr3L 14912269 14912312 35 103 6.5 8.5 7.5 4.1 150 chr3L 14912162 intron DCX-EMAP + chr3L 14912237 intron DCX-EMAP + chr3L 14912312 intron DCX-EMAP + chr3L_35_14910001 chr3L_14910001 RAL-340_100b 2102 chr3L 14933420 14933461 chr3L 14933527 14933550 11 105 7.5 8.5 8.0 1.2 130 chr3L 14933420 intron DCX-EMAP + chr3L 14933485 intron DCX-EMAP + chr3L 14933550 intron DCX-EMAP + chr3L_11_14930001 chr3L_14930001 RAL-340_100b 2103 chr3L 14954341 14954348 chr3L 14956035 14956042 transib2 8 1694 21.0 1.0 11.0 0.7 1701 chr3L 14954341 intergenic not near genes chr3L 14955192 intergenic not near genes chr3L 14956042 intergenic not near genes chr3L_8_14955001 chr3L_14955001 RAL-340_100b 2104 chr3L 14954350 14954391 chr3L 14956034 14956085 transib2 15 1693 8.5 1.0 4.8 2.6 1735 chr3L 14954350 intergenic not near genes chr3L 14955218 intergenic not near genes chr3L 14956085 intergenic not near genes chr3L_15_14955001 chr3L_14955001 RAL-340_100b 2105 chr3L 14970737 14970750 chr3L 14971072 14971085 F-element 7 335 13.5 12.5 13.0 0.5 348 chr3L 14970737 intergenic Tom + chr3L 14970911 intergenic not near genes chr3L 14971085 intergenic not near genes chr3L_7_14970001 chr3L_14970001 RAL-340_100b 2106 chr3L 14970756 14970760 chr3L 14971071 14971092 F-element 4 325 12.0 12.5 12.2 0.3 336 chr3L 14970756 intergenic Tom + chr3L 14970924 intergenic not near genes chr3L 14971092 intergenic not near genes chr3L_4_14970001 chr3L_14970001 RAL-340_100b 2107 chr3L 15048113 15048164 chr3L 15048452 15048503 13 340 23.5 37.5 30.5 0.4 390 chr3L 15048113 intron Sytbeta - chr3L 15048308 intron Sytbeta - chr3L 15048503 intron Sytbeta - chr3L_13_15045001 chr3L_15045001 RAL-340_100b 2108 chr3L 15053393 15053404 chr3L 15053757 15053768 4 364 10.5 9.5 10.0 0.4 375 chr3L 15053393 intron Sytbeta - chr3L 15053580 intron,3` UTR Sytbeta -,CG18649 - chr3L 15053768 intron,3` UTR Sytbeta -,CG18649 - chr3L_4_15050001 chr3L_15050001 RAL-340_100b 2109 chr3L 15053433 15053449 chr3L 15053756 15053813 17 350 2.5 9.5 6.0 2.4 380 chr3L 15053433 intron Sytbeta - chr3L 15053623 intron,3` UTR Sytbeta -,CG18649 - chr3L 15053813 intron,3` UTR Sytbeta -,CG18649 - chr3L_17_15050001 chr3L_15050001 RAL-340_100b 2110 chr3L 15085048 15085080 chr3L 15086219 15086271 1360 14 1180 3.5 3.0 3.2 3.3 1223 chr3L 15085048 intron cp309 - chr3L 15085660 intron cp309 - chr3L 15086271 intron cp309 - chr3L_14_15085001 chr3L_15085001 RAL-340_100b 2111 chr3L 15209048 15209099 chr3L 15209152 15209158 10 100 2.5 2.0 2.2 3.1 110 chr3L 15209048 intergenic CG6888 + chr3L 15209103 intergenic not near genes chr3L 15209158 intergenic not near genes chr3L_10_15205001 chr3L_15205001 RAL-340_100b 2112 chr3L 15233538 15233575 chr3L 15233644 15233681 8 103 8.0 3.5 5.8 1.2 143 chr3L 15233538 intergenic not near genes chr3L 15233610 intergenic not near genes chr3L 15233681 intergenic not near genes chr3L_8_15230001 chr3L_15230001 RAL-340_100b 2113 chr3L 15384933 15384990 chr3L 15385086 15385143 29 143 9.5 6.5 8.0 3.2 210 chr3L 15384933 intergenic not near genes chr3L 15385038 intergenic not near genes chr3L 15385143 intergenic not near genes chr3L_29_15385001 chr3L_15385001 RAL-340_100b 2114 chr3L 15405995 15406055 chr3L 15406102 15406148 13 105 3.0 2.0 2.5 3.7 153 chr3L 15405995 intergenic not near genes chr3L 15406072 intergenic not near genes chr3L 15406148 intergenic not near genes chr3L_13_15405001 chr3L_15405001 RAL-340_100b 2115 chr3L 15423742 15423756 chr3L 15426611 15426625 opus 9 2869 18.5 4.0 11.2 0.7 2883 chr3L 15423742 intergenic not near genes chr3L 15425184 intergenic not near genes chr3L 15426625 intergenic not near genes chr3L_9_15425001 chr3L_15425001 RAL-340_100b 2116 chr3L 15423758 15423779 chr3L 15426627 15426648 opus 16 2867 9.5 5.5 7.5 1.9 2890 chr3L 15423758 intergenic not near genes chr3L 15425203 intergenic not near genes chr3L 15426648 intergenic not near genes chr3L_16_15425001 chr3L_15425001 RAL-340_100b 2117 chr3L 15443561 15443615 chr3L 15443662 15443717 25 101 3.0 5.5 4.2 4.8 156 chr3L 15443561 intergenic not near genes chr3L 15443639 intergenic not near genes chr3L 15443717 intergenic not near genes chr3L_25_15440001 chr3L_15440001 RAL-340_100b 2118 chr3L 15444626 15444684 chr3L 15444745 15444803 15 117 5.5 7.5 6.5 2.0 177 chr3L 15444626 intergenic not near genes chr3L 15444714 intergenic not near genes chr3L 15444803 intergenic not near genes chr3L_15_15440001 chr3L_15440001 RAL-340_100b 2119 chr3L 15447899 15447958 chr3L 15448019 15448075 16 112 14.0 8.5 11.2 1.3 176 chr3L 15447899 intergenic not near genes chr3L 15447987 intergenic not near genes chr3L 15448075 intergenic not near genes chr3L_16_15445001 chr3L_15445001 RAL-340_100b 2120 chr3L 15457154 15457290 chr3L 15457259 15457407 6 114 0.0 0.0 0.0 6.0 253 chr3L 15457154 intergenic CR45395 + chr3L 15457280 intergenic CR45395 + chr3L 15457407 intergenic CR45395 + chr3L_6_15455001 chr3L_15455001 RAL-340_100b 2121 chr3L 15466012 15466137 chr3L 15466119 15466258 13 111 0.0 0.0 0.0 13.0 246 chr3L 15466012 intergenic not near genes chr3L 15466135 intergenic not near genes chr3L 15466258 intergenic not near genes chr3L_13_15465001 chr3L_15465001 RAL-340_100b 2122 chr3L 15466493 15466550 chr3L 15466602 15466657 50 106 18.0 11.0 14.5 3.2 164 chr3L 15466493 intergenic not near genes chr3L 15466575 intergenic not near genes chr3L 15466657 intergenic not near genes chr3L_50_15465001 chr3L_15465001 RAL-340_100b 2123 chr3L 15511455 15511496 chr3L 15511558 15511599 12 102 5.5 6.0 5.8 1.8 144 chr3L 15511455 intron Eip71CD + chr3L 15511527 intron Eip71CD + chr3L 15511599 intron Eip71CD + chr3L_12_15510001 chr3L_15510001 RAL-340_100b 2124 chr3L 15541594 15541652 chr3L 15541710 15541743 9 113 3.5 3.0 3.2 2.1 149 chr3L 15541594 intron CrebA + chr3L 15541668 intron CrebA + chr3L 15541743 intron CrebA + chr3L_9_15540001 chr3L_15540001 RAL-340_100b 2125 chr3L 15554901 15554947 chr3L 15556713 15556759 S-element 18 1810 8.5 6.5 7.5 2.1 1858 chr3L 15554901 intron AGO2 + chr3L 15555830 intron AGO2 + chr3L 15556759 intron AGO2 + chr3L_18_15555001 chr3L_15555001 RAL-340_100b 2126 chr3L 15600177 15600196 chr3L 15600303 15600322 6 126 6.5 4.5 5.5 0.9 145 chr3L 15600177 intron RhoGAP71E + chr3L 15600250 intron RhoGAP71E + chr3L 15600322 intron RhoGAP71E + chr3L_6_15600001 chr3L_15600001 RAL-340_100b 2127 chr3L 15695951 15695977 chr3L 15696054 15696080 6 103 12.5 9.0 10.8 0.5 129 chr3L 15695951 intergenic not near genes chr3L 15696016 intergenic not near genes chr3L 15696080 intergenic not near genes chr3L_6_15695001 chr3L_15695001 RAL-340_100b 2128 chr3L 15695978 15696007 chr3L 15696053 15696105 10 95 6.0 8.5 7.2 1.2 127 chr3L 15695978 intergenic not near genes chr3L 15696042 intergenic not near genes chr3L 15696105 intergenic not near genes chr3L_10_15695001 chr3L_15695001 RAL-340_100b 2129 chr3L 15732103 15732149 chr3L 15732209 15732255 8 100 7.5 0.5 4.0 1.6 152 chr3L 15732103 intergenic not near genes chr3L 15732179 intergenic not near genes chr3L 15732255 intergenic not near genes chr3L_8_15730001 chr3L_15730001 RAL-340_100b 2130 chr3L 15768990 15769123 chr3L 15769119 15769239 4 119 0.5 0.5 0.5 2.7 249 chr3L 15768990 intergenic not near genes chr3L 15769114 intergenic not near genes chr3L 15769239 intergenic not near genes chr3L_4_15765001 chr3L_15765001 RAL-340_100b 2131 chr3L 15772739 15772793 chr3L 15772862 15772916 27 117 5.5 5.5 5.5 4.2 177 chr3L 15772739 intergenic not near genes chr3L 15772828 intergenic not near genes chr3L 15772916 intergenic not near genes chr3L_27_15770001 chr3L_15770001 RAL-340_100b 2132 chr3L 15774876 15774882 chr3L 15774991 15774997 5 115 1.5 6.5 4.0 1.0 121 chr3L 15774876 intergenic not near genes chr3L 15774936 intergenic not near genes chr3L 15774997 intergenic not near genes chr3L_5_15770001 chr3L_15770001 RAL-340_100b 2133 chr3L 15809151 15809152 chr3L 15809260 15809261 4 109 20.0 18.5 19.2 0.2 110 chr3L 15809151 intergenic CG6244 +,CG13445 + chr3L 15809206 intergenic CG13445 +,CG6244 + chr3L 15809261 intergenic CG13445 +,CG6244 + chr3L_4_15805001 chr3L_15805001 RAL-340_100b 2134 chr3L 15809157 15809197 chr3L 15809261 15809306 24 107 6.0 18.5 12.2 1.8 149 chr3L 15809157 intergenic CG6244 +,CG13445 + chr3L 15809232 intergenic CG13445 +,CG6244 + chr3L 15809306 intergenic CG13445 +,CG6244 + chr3L_24_15805001 chr3L_15805001 RAL-340_100b 2135 chr3L 15832233 15832284 chr3L 15832334 15832384 18 102 9.5 6.0 7.8 2.0 151 chr3L 15832233 intergenic dbo +,CG12713 + chr3L 15832308 intergenic CG12713 +,dbo + chr3L 15832384 intergenic CG12713 +,dbo + chr3L_18_15830001 chr3L_15830001 RAL-340_100b 2136 chr3L 15840408 15840469 chr3L 15840521 15840579 10 107 5.5 5.5 5.5 1.5 171 chr3L 15840408 intron CG32150 - chr3L 15840494 intron CG32150 - chr3L 15840579 intron CG32150 - chr3L_10_15840001 chr3L_15840001 RAL-340_100b 2137 chr3L 15843036 15843039 chr3L 15843204 15843207 5 168 0.0 4.0 2.0 1.7 171 chr3L 15843036 intron CG32150 - chr3L 15843122 intron CG32150 - chr3L 15843207 intron CG32150 - chr3L_5_15840001 chr3L_15840001 RAL-340_100b 2138 chr3L 15899216 15899249 chr3L 15899793 15899831 jockey 9 582 7.5 3.0 5.2 1.5 615 chr3L 15899216 intergenic pHCl - chr3L 15899524 intergenic pHCl - chr3L 15899831 intergenic sff - chr3L_9_15895001 chr3L_15895001 RAL-340_100b 2139 chr3L 15981657 15981662 chr3L 15981768 15981773 4 111 24.5 10.5 17.5 0.2 116 chr3L 15981657 intron,3` UTR brm -,CG17027 + chr3L 15981715 intron,3` UTR brm -,CG17027 + chr3L 15981773 intron,3` UTR brm -,CG17027 + chr3L_4_15980001 chr3L_15980001 RAL-340_100b 2140 chr3L 15989211 15989226 chr3L 15989319 15989334 8 108 6.5 8.5 7.5 0.9 123 chr3L 15989211 intron Hip14 + chr3L 15989272 intron Hip14 + chr3L 15989334 intron Hip14 + chr3L_8_15985001 chr3L_15985001 RAL-340_100b 2141 chr3L 16162587 16162624 chr3L 16162690 16162733 11 108 5.5 5.5 5.5 1.7 146 chr3L 16162587 intron CG5151 - chr3L 16162660 intron CG5151 - chr3L 16162733 intron CG5151 - chr3L_11_16160001 chr3L_16160001 RAL-340_100b 2142 chr3L 16180330 16180358 chr3L 16180451 16180482 15 121 7.0 7.5 7.2 1.8 152 chr3L 16180330 intergenic not near genes chr3L 16180406 intergenic not near genes chr3L 16180482 intergenic not near genes chr3L_15_16180001 chr3L_16180001 RAL-340_100b 2143 chr3L 16180362 16180370 chr3L 16180450 16180497 6 121 4.5 7.0 5.8 0.9 135 chr3L 16180362 intergenic not near genes chr3L 16180430 intergenic not near genes chr3L 16180497 intergenic not near genes chr3L_6_16180001 chr3L_16180001 RAL-340_100b 2144 chr3L 16184085 16184136 chr3L 16188929 16188980 X-element 25 4844 9.0 9.0 9.0 2.5 4895 chr3L 16184085 intergenic not near genes chr3L 16186532 intergenic not near genes chr3L 16188980 intergenic not near genes chr3L_25_16185001 chr3L_16185001 RAL-340_100b 2145 chr3L 16194318 16194324 chr3L 16194422 16194429 4 108 18.5 7.5 13.0 0.3 111 chr3L 16194318 intergenic not near genes chr3L 16194374 intergenic not near genes chr3L 16194429 intergenic not near genes chr3L_4_16190001 chr3L_16190001 RAL-340_100b 2146 chr3L 16194332 16194362 chr3L 16194436 16194465 10 110 7.0 12.5 9.8 0.9 133 chr3L 16194332 intergenic not near genes chr3L 16194398 intergenic not near genes chr3L 16194465 intergenic not near genes chr3L_10_16190001 chr3L_16190001 RAL-340_100b 2147 chr3L 16221242 16221290 chr3L 16221358 16221406 15 115 7.5 3.0 5.2 2.4 164 chr3L 16221242 intergenic not near genes chr3L 16221324 intergenic not near genes chr3L 16221406 intergenic not near genes chr3L_15_16220001 chr3L_16220001 RAL-340_100b 2148 chr3L 16240771 16240778 chr3L 16240928 16240935 5 155 0.0 25.5 12.8 0.4 164 chr3L 16240771 intergenic not near genes chr3L 16240853 intergenic not near genes chr3L 16240935 intergenic not near genes chr3L_5_16240001 chr3L_16240001 RAL-340_100b 2149 chr3L 4656841 4656864 chr3L 16261103 16261103 5 11604246 4.0 42.5 23.2 0.2 11604262 chr3L 4656841 intron axo - chr3L 10458972 intergenic Gem3 - chr3L 16261103 intergenic CG34247 - chr3L_5_10455001 chr3L_10455001 RAL-340_100b 2150 chr3L 16279063 16279105 chr3L 16279169 16279211 20 105 5.0 6.0 5.5 3.1 148 chr3L 16279063 exon CG13050 - chr3L 16279137 intron CG13050 - chr3L 16279211 5` UTR CG13050 - chr3L_20_16275001 chr3L_16275001 RAL-340_100b 2151 chr3L 16359934 16359949 chr3L 16360045 16360049 4 106 22.5 18.5 20.5 0.2 115 chr3L 16359934 intron CG45057 - chr3L 16359992 intron CG45057 - chr3L 16360049 intron CG45057 - chr3L_4_16355001 chr3L_16355001 RAL-340_100b 2152 chr3L 16359952 16359960 chr3L 16360044 16360065 10 108 19.5 18.0 18.8 0.5 113 chr3L 16359952 intron CG45057 - chr3L 16360008 intron CG45057 - chr3L 16360065 intron CG45057 - chr3L_10_16360001 chr3L_16360001 RAL-340_100b 2153 chr3L 16359962 16359984 chr3L 16360043 16360095 19 104 13.0 16.5 14.8 1.2 133 chr3L 16359962 intron CG45057 - chr3L 16360028 intron CG45057 - chr3L 16360095 intron CG45057 - chr3L_19_16360001 chr3L_16360001 RAL-340_100b 2154 chr3L 16431824 16431863 chr3L 16431943 16431974 5 115 0.5 0.5 0.5 3.3 150 chr3L 16431824 intron,intron CG33158 +,dsx-c73A - chr3L 16431899 intron,intron CG33158 +,dsx-c73A - chr3L 16431974 intron,intron CG33158 +,dsx-c73A - chr3L_5_16430001 chr3L_16430001 RAL-340_100b 2155 chr3L 16437058 16437069 chr3L 16437147 16437180 4 106 19.0 2.5 10.8 0.3 122 chr3L 16437058 intron,intron CG33158 +,dsx-c73A - chr3L 16437119 intron,intron CG33158 +,dsx-c73A - chr3L 16437180 intron,intron CG33158 +,dsx-c73A - chr3L_4_16435001 chr3L_16435001 RAL-340_100b 2156 chr3L 16437071 16437097 chr3L 16437146 16437208 8 94 11.0 3.0 7.0 1.0 137 chr3L 16437071 intron,intron CG33158 +,dsx-c73A - chr3L 16437140 intron,intron CG33158 +,dsx-c73A - chr3L 16437208 intron,intron CG33158 +,dsx-c73A - chr3L_8_16435001 chr3L_16435001 RAL-340_100b 2157 chr3L 16443822 16443878 chr3L 16446187 16446243 Doc 40 2359 8.0 5.5 6.8 5.1 2421 chr3L 16443822 intron,intron CG33158 +,dsx-c73A - chr3L 16445032 intron,intron CG33158 +,dsx-c73A - chr3L 16446243 intron,intron CG33158 +,dsx-c73A - chr3L_40_16445001 chr3L_16445001 RAL-340_100b 2158 chr3L 16457527 16457558 chr3L 16457642 16457678 12 116 5.5 13.0 9.2 1.2 151 chr3L 16457527 intron CG33158 + chr3L 16457602 intron CG33158 + chr3L 16457678 intron CG33158 + chr3L_12_16455001 chr3L_16455001 RAL-340_100b 2159 chr3L 16493957 16493990 chr3L 16494499 16494532 jockey 13 542 11.0 9.5 10.2 1.2 575 chr3L 16493957 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494244 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494532 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_13_16490001 chr3L_16490001 RAL-340_100b 2160 chr3L 16493991 16494008 chr3L 16494490 16494535 jockey 4 528 5.5 4.5 5.0 0.7 544 chr3L 16493991 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494263 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494535 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_4_16490001 chr3L_16490001 RAL-340_100b 2161 chr3L 16514548 16514584 chr3L 16514663 16514706 8 122 4.5 5.0 4.8 1.4 158 chr3L 16514548 intron CG43373 - chr3L 16514627 intron CG43373 - chr3L 16514706 intron CG43373 - chr3L_8_16510001 chr3L_16510001 RAL-340_100b 2162 chr3L 16515307 16515337 chr3L 16515416 16515446 30 108 6.5 10.5 8.5 3.2 139 chr3L 16515307 intron CG43373 - chr3L 16515376 intron CG43373 - chr3L 16515446 intron CG43373 - chr3L_30_16515001 chr3L_16515001 RAL-340_100b 2163 chr3L 10419358 10419384 chr3L 16541675 16541675 4 6122299 18.5 10.0 14.2 0.3 6122317 chr3L 10419358 intergenic not near genes chr3L 13480516 intron stv + chr3L 16541675 intron CG43373 - chr3L_4_13480001 chr3L_13480001 RAL-340_100b 2164 chr3L 16555901 16555925 chr3L 16556014 16556058 17 131 8.0 9.5 8.8 1.7 157 chr3L 16555901 intergenic not near genes chr3L 16555980 intergenic not near genes chr3L 16556058 intergenic not near genes chr3L_17_16555001 chr3L_16555001 RAL-340_100b 2165 chr3L 16610662 16610668 chr3L 16610772 16610778 4 108 23.0 11.5 17.2 0.2 116 chr3L 16610662 3` UTR Su(P) - chr3L 16610720 3` UTR Su(P) - chr3L 16610778 exon Su(P) - chr3L_4_16610001 chr3L_16610001 RAL-340_100b 2166 chr3L 16610669 16610714 chr3L 16610769 16610824 32 107 4.5 10.5 7.5 3.8 155 chr3L 16610669 3` UTR Su(P) - chr3L 16610746 exon Su(P) - chr3L 16610824 exon Su(P) - chr3L_32_16610001 chr3L_16610001 RAL-340_100b 2167 chr3L 16616488 16616535 chr3L 16621841 16621888 297 16 5345 8.5 10.5 9.5 1.5 5400 chr3L 16616488 3` UTR Abl - chr3L 16619188 3` UTR Abl - chr3L 16621888 3` UTR Abl - chr3L_16_16615001 chr3L_16615001 RAL-340_100b 2168 chr3L 16616536 16616543 chr3L 16621839 16621888 297 10 5339 8.0 10.5 9.2 1.0 5352 chr3L 16616536 3` UTR Abl - chr3L 16619212 3` UTR Abl - chr3L 16621888 3` UTR Abl - chr3L_10_16615001 chr3L_16615001 RAL-340_100b 2169 chr3L 16642781 16642836 chr3L 16642890 16642945 21 105 3.5 7.5 5.5 3.2 164 chr3L 16642781 intron Abl - chr3L 16642863 intron Abl - chr3L 16642945 intron Abl - chr3L_21_16640001 chr3L_16640001 RAL-340_100b 2170 chr3L 16652663 16652719 chr3L 16652761 16652793 34 100 8.0 9.5 8.8 3.5 130 chr3L 16652663 intron Baldspot - chr3L 16652728 intron Baldspot - chr3L 16652793 intron Baldspot - chr3L_34_16650001 chr3L_16650001 RAL-340_100b 2171 chr3L 16690154 16690163 chr3L 16690257 16690263 7 101 69.5 100.0 84.8 0.1 109 chr3L 16690154 intron,intron,intron Lasp -,CG43954 -,CR45179 + chr3L 16690208 intron,intron,intron Lasp -,CG43954 -,CR45179 + chr3L 16690263 intron,intron,intron Lasp -,CG43954 -,CR45179 + chr3L_7_16690001 chr3L_16690001 RAL-340_100b 2172 chr3L 3708080 3708081 chr3L 16702645 16702666 4 12994570 55.0 42.5 48.8 0.1 12994586 chr3L 3708080 intergenic CR45675 + chr3L 10205373 intergenic CR44538 + chr3L 16702666 intron,intron Lasp -,CG43954 - chr3L_4_10205001 chr3L_10205001 RAL-340_100b 2173 chr3L 16725552 16725552 chr3L 20924502 20924503 4 4198950 7.5 42.5 25.0 0.2 4198951 chr3L 16725552 3` UTR CG13026 - chr3L 18825028 intron Cat + chr3L 20924503 intergenic not near genes chr3L_4_18825001 chr3L_18825001 RAL-340_100b 2174 chr3L 16730913 16730934 chr3L 16731112 16731133 BS 10 198 6.5 6.5 6.5 1.3 220 chr3L 16730913 intergenic Dbp73D - chr3L 16731023 intergenic Dbp73D - chr3L 16731133 intergenic Dbp73D - chr3L_10_16730001 chr3L_16730001 RAL-340_100b 2175 chr3L 16746802 16746848 chr3L 16746919 16746941 29 102 10.0 13.0 11.5 2.3 139 chr3L 16746802 intergenic not near genes chr3L 16746872 intergenic not near genes chr3L 16746941 intergenic not near genes chr3L_29_16745001 chr3L_16745001 RAL-340_100b 2176 chr3L 16757619 16757669 chr3L 16757734 16757739 10 110 4.5 8.5 6.5 1.3 120 chr3L 16757619 intergenic not near genes chr3L 16757679 intergenic not near genes chr3L 16757739 intergenic not near genes chr3L_10_16755001 chr3L_16755001 RAL-340_100b 2177 chr3L 16764551 16764611 chr3L 16764669 16764743 14 126 8.5 0.0 4.2 2.7 192 chr3L 16764551 intergenic not near genes chr3L 16764647 intergenic not near genes chr3L 16764743 intergenic not near genes chr3L_14_16760001 chr3L_16760001 RAL-340_100b 2178 chr3L 16770448 16770478 chr3L 16770559 16770590 12 112 7.0 10.0 8.5 1.3 142 chr3L 16770448 intron Nrt + chr3L 16770519 intron Nrt + chr3L 16770590 intron Nrt + chr3L_12_16770001 chr3L_16770001 RAL-340_100b 2179 chr3L 16808097 16808141 chr3L 16808203 16808247 20 102 3.0 4.0 3.5 4.4 150 chr3L 16808097 intron nudC + chr3L 16808172 intron nudC + chr3L 16808247 intron nudC + chr3L_20_16805001 chr3L_16805001 RAL-340_100b 2180 chr3L 16817119 16817158 chr3L 16817232 16817270 11 112 0.0 0.0 0.0 11.0 151 chr3L 16817119 intron,intron nudC +,CG13024 - chr3L 16817194 intron,intron nudC +,CG13024 - chr3L 16817270 intron,intron nudC +,CG13024 - chr3L_11_16815001 chr3L_16815001 RAL-340_100b 2181 chr3L 16825335 16825347 chr3L 16825439 16825451 4 104 0.0 3.5 1.8 1.4 116 chr3L 16825335 intron CG13024 - chr3L 16825393 intron CG13024 - chr3L 16825451 intron CG13024 - chr3L_4_16825001 chr3L_16825001 RAL-340_100b 2182 chr3L 16844999 16845042 chr3L 16845137 16845180 15 137 3.5 11.0 7.2 1.8 181 chr3L 16844999 intergenic CG9669 -,CG9715 +,TSG101 + chr3L 16845090 intergenic CG9669 -,CG9715 + chr3L 16845180 intergenic CG9669 -,CG9715 + chr3L_15_16845001 chr3L_16845001 RAL-340_100b 2183 chr3L 16866316 16866329 chr3L 16866451 16866464 8 135 0.5 17.0 8.8 0.8 148 chr3L 16866316 intron Lmpt + chr3L 16866390 intron Lmpt + chr3L 16866464 intron Lmpt + chr3L_8_16865001 chr3L_16865001 RAL-340_100b 2184 chr3L 16869561 16869599 chr3L 16869669 16869707 15 108 13.5 20.5 17.0 0.8 146 chr3L 16869561 intron Lmpt + chr3L 16869634 intron Lmpt + chr3L 16869707 intron Lmpt + chr3L_15_16865001 chr3L_16865001 RAL-340_100b 2185 chr3L 16869600 16869608 chr3L 16869662 16869711 6 91 8.5 15.5 12.0 0.5 111 chr3L 16869600 intron Lmpt + chr3L 16869656 intron Lmpt + chr3L 16869711 intron Lmpt + chr3L_6_16865001 chr3L_16865001 RAL-340_100b 2186 chr3L 16874529 16874573 chr3L 16874700 16874759 40 183 6.0 15.0 10.5 3.5 230 chr3L 16874529 intron Lmpt + chr3L 16874644 intron Lmpt + chr3L 16874759 intron Lmpt + chr3L_40_16870001 chr3L_16870001 RAL-340_100b 2187 chr3L 16882293 16882306 chr3L 16882404 16882408 7 110 5.0 17.5 11.2 0.6 115 chr3L 16882293 intron Lmpt + chr3L 16882350 intron Lmpt + chr3L 16882408 intron Lmpt + chr3L_7_16880001 chr3L_16880001 RAL-340_100b 2188 chr3L 16888788 16888844 chr3L 16889103 16889157 24 310 8.5 7.5 8.0 2.7 369 chr3L 16888788 intron Lmpt + chr3L 16888972 intron Lmpt + chr3L 16889157 intron Lmpt + chr3L_24_16885001 chr3L_16885001 RAL-340_100b 2189 chr3L 16912904 16912955 chr3L 16913008 16913055 12 103 0.5 4.5 2.5 3.4 151 chr3L 16912904 intron Lmpt + chr3L 16912980 intron Lmpt + chr3L 16913055 intron Lmpt + chr3L_12_16910001 chr3L_16910001 RAL-340_100b 2190 chr3L 16922635 16922642 chr3L 16922854 16922861 6 218 5.5 10.0 7.8 0.7 226 chr3L 16922635 intergenic Lmpt + chr3L 16922748 intergenic Lmpt + chr3L 16922861 intergenic Lmpt +,CG13028 + chr3L_6_16920001 chr3L_16920001 RAL-340_100b 2191 chr3L 16945706 16945757 chr3L 16954884 16954935 roo 23 9170 9.0 6.0 7.5 2.7 9229 chr3L 16945706 exon Obp73a + chr3L 16950320 intergenic not near genes chr3L 16954935 5` UTR Nc73EF + chr3L_23_16950001 chr3L_16950001 RAL-340_100b 2192 chr3L 16972041 16972061 chr3L 16972142 16972162 10 96 7.5 4.0 5.8 1.5 121 chr3L 16972041 intron Exn + chr3L 16972102 intron Exn + chr3L 16972162 intron Exn + chr3L_10_16970001 chr3L_16970001 RAL-340_100b 2193 chr3L 16972065 16972073 chr3L 16972135 16972147 5 82 7.0 3.0 5.0 0.8 82 chr3L 16972065 intron Exn + chr3L 16972106 intron Exn + chr3L 16972147 intron Exn + chr3L_5_16970001 chr3L_16970001 RAL-340_100b 2194 chr3L 16989480 16989531 chr3L 16989586 16989637 16 96 7.0 8.5 7.8 1.8 157 chr3L 16989480 intron Exn + chr3L 16989558 intron Exn + chr3L 16989637 intron Exn + chr3L_16_16985001 chr3L_16985001 RAL-340_100b 2195 chr3L 16989532 16989535 chr3L 16989585 16989636 10 88 6.0 8.5 7.2 1.2 104 chr3L 16989532 intron Exn + chr3L 16989584 intron Exn + chr3L 16989636 intron Exn + chr3L_10_16985001 chr3L_16985001 RAL-340_100b 2196 chr3L 17034908 17034971 chr3L 17035121 17035128 G2 13 207 1.5 2.5 2.0 4.3 220 chr3L 17034908 intergenic not near genes chr3L 17035018 intergenic not near genes chr3L 17035128 intergenic not near genes chr3L_13_17035001 chr3L_17035001 RAL-340_100b 2197 chr3L 17084982 17085035 chr3L 17094156 17094209 roo 16 9173 4.5 8.5 6.5 2.1 9227 chr3L 17084982 intron Rbp6 - chr3L 17089596 intron Rbp6 - chr3L 17094209 intron Rbp6 - chr3L_16_17085001 chr3L_17085001 RAL-340_100b 2198 chr3L 17102918 17102965 chr3L 17106801 17106853 23 3877 12.5 11.5 12.0 1.8 3935 chr3L 17102918 intron Rbp6 - chr3L 17104886 intron Rbp6 - chr3L 17106853 intron Rbp6 - chr3L_23_17100001 chr3L_17100001 RAL-340_100b 2199 chr3L 17120629 17120928 chr3L 17120730 17121009 43 95 22.5 6.5 14.5 2.8 380 chr3L 17120629 intron Rbp6 - chr3L 17120819 intron Rbp6 - chr3L 17121009 intron Rbp6 - chr3L_43_17120001 chr3L_17120001 RAL-340_100b 2200 chr3L 17120933 17120936 chr3L 17121007 17121023 5 83 18.5 14.5 16.5 0.3 90 chr3L 17120933 intron Rbp6 - chr3L 17120978 intron Rbp6 - chr3L 17121023 intron Rbp6 - chr3L_5_17120001 chr3L_17120001 RAL-340_100b 2201 chr3L 17120937 17120944 chr3L 17120998 17121040 4 74 15.5 14.0 14.8 0.3 103 chr3L 17120937 intron Rbp6 - chr3L 17120988 intron Rbp6 - chr3L 17121040 intron Rbp6 - chr3L_4_17120001 chr3L_17120001 RAL-340_100b 2202 chr3L 17126019 17126036 chr3L 17126253 17126276 22 237 16.5 21.5 19.0 1.1 257 chr3L 17126019 intron Rbp6 - chr3L 17126148 intron Rbp6 - chr3L 17126276 intron Rbp6 - chr3L_22_17125001 chr3L_17125001 RAL-340_100b 2203 chr3L 17126037 17126039 chr3L 17126246 17126279 4 231 15.0 17.0 16.0 0.2 242 chr3L 17126037 intron Rbp6 - chr3L 17126158 intron Rbp6 - chr3L 17126279 intron Rbp6 - chr3L_4_17125001 chr3L_17125001 RAL-340_100b 2204 chr3L 17126040 17126047 chr3L 17126245 17126287 5 233 13.0 16.0 14.5 0.3 247 chr3L 17126040 intron Rbp6 - chr3L 17126164 intron Rbp6 - chr3L 17126287 intron Rbp6 - chr3L_5_17125001 chr3L_17125001 RAL-340_100b 2205 chr3L 17149141 17149183 chr3L 17149247 17149257 23 102 12.0 0.0 6.0 3.3 116 chr3L 17149141 intron Rbp6 - chr3L 17149199 intron Rbp6 - chr3L 17149257 intron Rbp6 - chr3L_23_17145001 chr3L_17145001 RAL-340_100b 2206 chr3L 17237359 17237384 chr3L 17237536 17237561 9 177 13.0 2.5 7.8 1.0 202 chr3L 17237359 intron Rbp6 - chr3L 17237460 intron Rbp6 - chr3L 17237561 intron Rbp6 - chr3L_9_17235001 chr3L_17235001 RAL-340_100b 2207 chr3L 17272221 17272265 chr3L 17272379 17272423 16 155 5.0 8.5 6.8 2.1 202 chr3L 17272221 intergenic not near genes chr3L 17272322 intergenic not near genes chr3L 17272423 intergenic not near genes chr3L_16_17270001 chr3L_17270001 RAL-340_100b 2208 chr3L 17317027 17317073 chr3L 17317539 17317590 21 527 62.5 84.0 73.2 0.3 563 chr3L 17317027 intergenic not near genes chr3L 17317308 intergenic not near genes chr3L 17317590 intergenic not near genes chr3L_21_17315001 chr3L_17315001 RAL-340_100b 2209 chr3L 17331043 17331053 chr3L 17331158 17331168 7 115 18.5 7.5 13.0 0.5 125 chr3L 17331043 intergenic not near genes chr3L 17331106 intergenic not near genes chr3L 17331168 intergenic not near genes chr3L_7_17330001 chr3L_17330001 RAL-340_100b 2210 chr3L 17331054 17331094 chr3L 17331152 17331204 13 110 5.5 6.5 6.0 1.9 150 chr3L 17331054 intergenic not near genes chr3L 17331129 intergenic not near genes chr3L 17331204 intergenic not near genes chr3L_13_17330001 chr3L_17330001 RAL-340_100b 2211 chr3L 17358041 17358059 chr3L 17358148 17358166 9 107 10.5 1.5 6.0 1.3 125 chr3L 17358041 3` UTR CG7692 + chr3L 17358104 intergenic CG7692 + chr3L 17358166 intergenic CG7692 + chr3L_9_17355001 chr3L_17355001 RAL-340_100b 2212 chr3L 17367410 17367457 chr3L 17367529 17367576 16 119 9.0 7.5 8.2 1.7 166 chr3L 17367410 intergenic CR45688 +,Cad74A - chr3L 17367493 intergenic CR45688 +,Cad74A - chr3L 17367576 intergenic Cad74A -,CR45688 + chr3L_16_17365001 chr3L_17365001 RAL-340_100b 2213 chr3L 17376331 17376361 chr3L 17377252 17377278 9 920 47.0 34.0 40.5 0.2 947 chr3L 17376331 intron Cad74A - chr3L 17376804 intron Cad74A - chr3L 17377278 intron Cad74A - chr3L_9_17375001 chr3L_17375001 RAL-340_100b 2214 chr3L 17376329 17376361 chr3L 17377280 17377302 7 943 47.0 31.0 39.0 0.2 973 chr3L 17376329 intron Cad74A - chr3L 17376816 intron Cad74A - chr3L 17377302 intron Cad74A - chr3L_7_17375001 chr3L_17375001 RAL-340_100b 2215 chr3L 17408891 17408927 chr3L 17408992 17409028 9 98 9.0 4.5 6.8 1.2 137 chr3L 17408891 intron blot - chr3L 17408960 intron blot - chr3L 17409028 intron blot - chr3L_9_17405001 chr3L_17405001 RAL-340_100b 2216 chr3L 17510708 17510766 chr3L 17510817 17510863 24 104 5.5 5.5 5.5 3.7 155 chr3L 17510708 exon Oatp74D + chr3L 17510786 intron Oatp74D + chr3L 17510863 intron Oatp74D + chr3L_24_17510001 chr3L_17510001 RAL-340_100b 2217 chr3L 17516968 17516971 chr3L 17524551 17524554 412 4 7582 25.5 10.0 17.8 0.2 7586 chr3L 17516968 intron CG7564 + chr3L 17520761 intron CG7564 + chr3L 17524554 3` UTR CG7564 + chr3L_4_17520001 chr3L_17520001 RAL-340_100b 2218 chr3L 17516973 17517008 chr3L 17524540 17524591 412 27 7579 12.5 6.5 9.5 2.6 7618 chr3L 17516973 intron CG7564 + chr3L 17520782 intron CG7564 + chr3L 17524591 3` UTR CG7564 + chr3L_27_17520001 chr3L_17520001 RAL-340_100b 2219 chr3L 17542649 17542685 chr3L 17542801 17542837 18 147 3.0 18.5 10.8 1.5 188 chr3L 17542649 exon Nedd4 + chr3L 17542743 exon Nedd4 + chr3L 17542837 intron Nedd4 + chr3L_18_17540001 chr3L_17540001 RAL-340_100b 2220 chr3L 17594221 17594245 chr3L 17594327 17594346 13 105 9.0 5.5 7.2 1.6 125 chr3L 17594221 intron Eip74EF - chr3L 17594284 intron Eip74EF - chr3L 17594346 intron Eip74EF - chr3L_13_17590001 chr3L_17590001 RAL-340_100b 2221 chr3L 17594246 17594274 chr3L 17594321 17594375 10 101 3.5 3.5 3.5 2.2 129 chr3L 17594246 intron Eip74EF - chr3L 17594310 intron Eip74EF - chr3L 17594375 intron Eip74EF - chr3L_10_17590001 chr3L_17590001 RAL-340_100b 2222 chr3L 17595143 17595197 chr3L 17595270 17595345 14 134 3.0 1.0 2.0 4.7 202 chr3L 17595143 intron Eip74EF - chr3L 17595244 intron Eip74EF - chr3L 17595345 intron Eip74EF - chr3L_14_17595001 chr3L_17595001 RAL-340_100b 2223 chr3L 17730831 17730838 chr3L 17738181 17738193 mdg1 6 7353 20.5 11.5 16.0 0.4 7362 chr3L 17730831 intron Ccn + chr3L 17734512 intron Ccn + chr3L 17738193 intron Ccn + chr3L_6_17730001 chr3L_17730001 RAL-340_100b 2224 chr3L 17730839 17730884 chr3L 17738179 17738201 mdg1 26 7342 6.5 10.5 8.5 2.7 7362 chr3L 17730839 intron Ccn + chr3L 17734520 intron Ccn + chr3L 17738201 intron Ccn + chr3L_26_17730001 chr3L_17730001 RAL-340_100b 2225 chr3L 17787664 17787703 chr3L 17787782 17787795 15 116 13.0 10.5 11.8 1.2 131 chr3L 17787664 intergenic not near genes chr3L 17787730 intergenic not near genes chr3L 17787795 intergenic not near genes chr3L_15_17785001 chr3L_17785001 RAL-340_100b 2226 chr3L 17789835 17789876 chr3L 17789935 17789977 10 101 5.5 6.0 5.8 1.5 142 chr3L 17789835 intergenic not near genes chr3L 17789906 intergenic not near genes chr3L 17789977 intergenic not near genes chr3L_10_17785001 chr3L_17785001 RAL-340_100b 2227 chr3L 17790594 17790635 chr3L 17790884 17790920 14 288 5.5 8.5 7.0 1.8 326 chr3L 17790594 intergenic CG42815 - chr3L 17790757 intergenic CG42815 - chr3L 17790920 intergenic CG42815 - chr3L_14_17790001 chr3L_17790001 RAL-340_100b 2228 chr3L 17799789 17799829 chr3L 17801601 17801641 S-element 9 1812 4.5 3.5 4.0 1.8 1852 chr3L 17799789 intron NUCB1 - chr3L 17800715 intron NUCB1 - chr3L 17801641 intron NUCB1 - chr3L_9_17800001 chr3L_17800001 RAL-340_100b 2229 chr3L 17884674 17884699 chr3L 17884799 17884824 14 124 10.5 1.5 6.0 2.0 150 chr3L 17884674 intergenic CG5506 - chr3L 17884749 intergenic CG5506 - chr3L 17884824 intergenic CG5506 - chr3L_14_17880001 chr3L_17880001 RAL-340_100b 2230 chr3L 17889011 17889015 chr3L 17889117 17889125 4 108 9.5 13.0 11.2 0.3 114 chr3L 17889011 intron CG7402 + chr3L 17889068 intron CG7402 + chr3L 17889125 intron CG7402 + chr3L_4_17885001 chr3L_17885001 RAL-340_100b 2231 chr3L 17889018 17889021 chr3L 17889113 17889131 6 107 8.0 13.0 10.5 0.5 113 chr3L 17889018 intron CG7402 + chr3L 17889074 intron CG7402 + chr3L 17889131 intron CG7402 + chr3L_6_17885001 chr3L_17885001 RAL-340_100b 2232 chr3L 17889023 17889036 chr3L 17889104 17889146 8 106 4.5 11.0 7.8 0.9 123 chr3L 17889023 intron CG7402 + chr3L 17889084 intron CG7402 + chr3L 17889146 intron CG7402 + chr3L_8_17885001 chr3L_17885001 RAL-340_100b 2233 chr3L 17918349 17918401 chr3L 17921177 17921222 opus 12 2826 9.0 5.5 7.2 1.5 2873 chr3L 17918349 intergenic not near genes chr3L 17919786 intergenic not near genes chr3L 17921222 intergenic not near genes chr3L_12_17915001 chr3L_17915001 RAL-340_100b 2234 chr3L 17965474 17965499 chr3L 17965624 17965639 13 147 6.0 12.5 9.2 1.3 165 chr3L 17965474 intron Eip75B - chr3L 17965556 intron Eip75B - chr3L 17965639 intron Eip75B - chr3L_13_17965001 chr3L_17965001 RAL-340_100b 2235 chr3L 17991556 17991583 chr3L 17991659 17991686 15 101 10.5 10.0 10.2 1.3 130 chr3L 17991556 intron Eip75B - chr3L 17991621 intron Eip75B - chr3L 17991686 intron Eip75B - chr3L_15_17990001 chr3L_17990001 RAL-340_100b 2236 chr3L 17991584 17991589 chr3L 17991646 17991692 4 91 8.5 9.0 8.8 0.4 108 chr3L 17991584 intron Eip75B - chr3L 17991638 intron Eip75B - chr3L 17991692 intron Eip75B - chr3L_4_17990001 chr3L_17990001 RAL-340_100b 2237 chr3L 18034702 18034710 chr3L 18034801 18034819 4 106 7.5 8.0 7.8 0.5 117 chr3L 18034702 intron Eip75B - chr3L 18034760 intron Eip75B - chr3L 18034819 intron Eip75B - chr3L_4_18030001 chr3L_18030001 RAL-340_100b 2238 chr3L 18034715 18034732 chr3L 18034797 18034839 10 106 5.0 7.0 6.0 1.4 124 chr3L 18034715 intron Eip75B - chr3L 18034777 intron Eip75B - chr3L 18034839 intron Eip75B - chr3L_10_18030001 chr3L_18030001 RAL-340_100b 2239 chr3L 18034737 18034745 chr3L 18034796 18034854 4 95 3.5 6.5 5.0 0.7 117 chr3L 18034737 intron Eip75B - chr3L 18034796 intron Eip75B - chr3L 18034854 intron Eip75B - chr3L_4_18030001 chr3L_18030001 RAL-340_100b 2240 chr3L 18042491 18042514 chr3L 18042594 18042617 5 103 0.0 5.0 2.5 1.4 126 chr3L 18042491 intron Eip75B - chr3L 18042554 intron Eip75B - chr3L 18042617 intron Eip75B - chr3L_5_18040001 chr3L_18040001 RAL-340_100b 2241 chr3L 18047681 18047728 chr3L 18056762 18056809 roo 17 9079 11.5 6.5 9.0 1.7 9128 chr3L 18047681 intron Eip75B - chr3L 18052245 intron Eip75B - chr3L 18056809 intron Eip75B - chr3L_17_18050001 chr3L_18050001 RAL-340_100b 2242 chr3L 18106227 18106278 chr3L 18106371 18106390 22 137 4.5 0.0 2.2 6.9 163 chr3L 18106227 intergenic CG13698 -,mRpS26 + chr3L 18106308 intergenic CG13698 -,mRpS26 + chr3L 18106390 intergenic mRpS26 +,CG13698 - chr3L_22_18105001 chr3L_18105001 RAL-340_100b 2243 chr3L 18107591 18107649 chr3L 18107709 18107767 14 116 3.5 4.5 4.0 2.8 176 chr3L 18107591 intergenic mRpS26 +,CG5147 - chr3L 18107679 intergenic CG5147 -,mRpS26 + chr3L 18107767 intergenic CG5147 -,mRpS26 + chr3L_14_18105001 chr3L_18105001 RAL-340_100b 2244 chr3L 18118095 18118133 chr3L 18118223 18118250 16 127 2.0 7.5 4.8 2.8 155 chr3L 18118095 3` UTR,intron CG32195 +,CG7341 + chr3L 18118172 3` UTR,intron CG32195 +,CG7341 + chr3L 18118250 3` UTR,intron CG32195 +,CG7341 + chr3L_16_18115001 chr3L_18115001 RAL-340_100b 2245 chr3L 18138222 18138258 chr3L 18138316 18138362 17 98 8.5 12.5 10.5 1.5 140 chr3L 18138222 intergenic not near genes chr3L 18138292 intergenic not near genes chr3L 18138362 intergenic not near genes chr3L_17_18135001 chr3L_18135001 RAL-340_100b 2246 chr3L 18138583 18138620 chr3L 18138692 18138728 23 107 12.5 6.0 9.2 2.3 145 chr3L 18138583 intergenic not near genes chr3L 18138656 intergenic not near genes chr3L 18138728 intergenic not near genes chr3L_23_18135001 chr3L_18135001 RAL-340_100b 2247 chr3L 18152711 18152754 chr3L 18152847 18152889 8 136 1.0 10.5 5.8 1.2 178 chr3L 18152711 intron CG7330 + chr3L 18152800 intron CG7330 + chr3L 18152889 intron CG7330 + chr3L_8_18150001 chr3L_18150001 RAL-340_100b 2248 chr3L 18172666 18172673 chr3L 18172767 18172774 6 101 51.0 13.0 32.0 0.2 108 chr3L 18172666 intron W - chr3L 18172720 intron W - chr3L 18172774 intron W - chr3L_6_18170001 chr3L_18170001 RAL-340_100b 2249 chr3L 18172675 18172704 chr3L 18172766 18172805 28 100 29.5 12.0 20.8 1.3 130 chr3L 18172675 intron W - chr3L 18172740 intron W - chr3L 18172805 intron W - chr3L_28_18170001 chr3L_18170001 RAL-340_100b 2250 chr3L 18198929 18198934 chr3L 24821492 24821494 72 6622563 0.0 47.5 23.8 2.9 6622565 chr3L 18198929 intergenic not near genes chr3L 21510212 intron M6 + chr3L 24821494 intergenic not near genes chr3L_72_21510001 chr3L_21510001 RAL-340_100b 2251 chr3L 18203605 18203628 chr3L 18203693 18203736 5 103 8.5 0.0 4.2 1.0 131 chr3L 18203605 3` UTR CG7320 + chr3L 18203670 intergenic CG7320 + chr3L 18203736 intergenic CG7320 + chr3L_5_18200001 chr3L_18200001 RAL-340_100b 2252 chr3L 18248953 18248986 chr3L 18249061 18249105 18 122 4.0 10.5 7.2 2.2 152 chr3L 18248953 intergenic not near genes chr3L 18249029 intergenic not near genes chr3L 18249105 intergenic not near genes chr3L_18_18245001 chr3L_18245001 RAL-340_100b 2253 chr3L 18262447 18262489 chr3L 18262553 18262597 20 107 9.5 6.0 7.8 2.3 150 chr3L 18262447 intergenic not near genes chr3L 18262522 intergenic not near genes chr3L 18262597 intergenic not near genes chr3L_20_18260001 chr3L_18260001 RAL-340_100b 2254 chr3L 18342061 18342103 chr3L 18342159 18342208 7 100 0.0 5.0 2.5 2.0 147 chr3L 18342061 intergenic not near genes chr3L 18342134 intergenic not near genes chr3L 18342208 intergenic not near genes chr3L_7_18340001 chr3L_18340001 RAL-340_100b 2255 chr3L 18343527 18343536 chr3L 18343660 18343664 5 132 2.0 4.0 3.0 1.2 137 chr3L 18343527 intergenic not near genes chr3L 18343596 intergenic not near genes chr3L 18343664 intergenic not near genes chr3L_5_18340001 chr3L_18340001 RAL-340_100b 2256 chr3L 18375947 18375983 chr3L 18376057 18376092 15 107 10.5 2.5 6.5 2.0 145 chr3L 18375947 intergenic not near genes chr3L 18376020 intergenic not near genes chr3L 18376092 intergenic not near genes chr3L_15_18375001 chr3L_18375001 RAL-340_100b 2257 chr3L 18375991 18376004 chr3L 18376086 18376114 9 107 6.5 7.5 7.0 1.1 123 chr3L 18375991 intergenic not near genes chr3L 18376052 intergenic not near genes chr3L 18376114 intergenic not near genes chr3L_9_18375001 chr3L_18375001 RAL-340_100b 2258 chr3L 18383126 18383134 chr3L 18383183 18383239 10 102 0.0 5.0 2.5 2.9 113 chr3L 18383126 intergenic not near genes chr3L 18383182 intergenic not near genes chr3L 18383239 intergenic not near genes chr3L_10_18380001 chr3L_18380001 RAL-340_100b 2259 chr3L 18408713 18408761 chr3L 18408824 18408872 8 107 3.0 2.0 2.5 2.3 159 chr3L 18408713 intergenic not near genes chr3L 18408792 intergenic not near genes chr3L 18408872 intergenic not near genes chr3L_8_18405001 chr3L_18405001 RAL-340_100b 2260 chr3L 9013689 9013695 chr3L 18417066 18417066 73 9403375 27.0 45.0 36.0 2.0 9403377 chr3L 9013689 intron Doc2 - chr3L 13715378 intron bru-3 - chr3L 18417066 intergenic not near genes chr3L_73_13715001 chr3L_13715001 RAL-340_100b 2261 chr3L 9307795 9307796 chr3L 18417066 18417066 42 9109271 24.5 45.0 34.8 1.2 9109271 chr3L 9307795 intergenic not near genes chr3L 13862430 intron CG8745 - chr3L 18417066 intergenic not near genes chr3L_42_13860001 chr3L_13860001 RAL-340_100b 2262 chr3L 18417066 18417066 chr3L 19220633 19220637 42 803569 41.0 52.0 46.5 0.9 803571 chr3L 18417066 intergenic not near genes chr3L 18818852 intron CG14073 - chr3L 19220637 intron fz2 - chr3L_42_18815001 chr3L_18815001 RAL-340_100b 2263 chr3L 18417066 18417067 chr3L 22908066 22908067 11 4491000 41.5 65.5 53.5 0.2 4491001 chr3L 18417066 intergenic not near genes chr3L 20662566 intergenic not near genes chr3L 22908067 intergenic not near genes chr3L_11_20660001 chr3L_20660001 RAL-340_100b 2264 chr3L 18417992 18418044 chr3L 18418464 18418516 10 469 5.0 5.0 5.0 1.7 524 chr3L 18417992 intergenic not near genes chr3L 18418254 intergenic not near genes chr3L 18418516 intergenic not near genes chr3L_10_18415001 chr3L_18415001 RAL-340_100b 2265 chr3L 18437252 18437286 chr3L 18437375 18437398 16 121 4.0 11.0 7.5 1.9 146 chr3L 18437252 intergenic not near genes chr3L 18437325 intergenic not near genes chr3L 18437398 intergenic not near genes chr3L_16_18435001 chr3L_18435001 RAL-340_100b 2266 chr3L 18448593 18448620 chr3L 18448710 18448737 7 117 7.0 4.0 5.5 1.1 144 chr3L 18448593 intergenic not near genes chr3L 18448665 intergenic not near genes chr3L 18448737 intergenic not near genes chr3L_7_18445001 chr3L_18445001 RAL-340_100b 2267 chr3L 18456253 18456297 chr3L 18456365 18456410 9 110 6.5 4.0 5.2 1.5 157 chr3L 18456253 intergenic CR44670 - chr3L 18456332 intergenic CR44670 - chr3L 18456410 3` UTR CR44670 - chr3L_9_18455001 chr3L_18455001 RAL-340_100b 2268 chr3L 18464464 18464494 chr3L 18464575 18464576 8 104 13.5 6.0 9.8 0.7 112 chr3L 18464464 intergenic not near genes chr3L 18464520 intergenic not near genes chr3L 18464576 intergenic not near genes chr3L_8_18460001 chr3L_18460001 RAL-340_100b 2269 chr3L 18464497 18464513 chr3L 18464573 18464624 6 89 10.0 6.0 8.0 0.7 127 chr3L 18464497 intergenic not near genes chr3L 18464560 intergenic not near genes chr3L 18464624 intergenic not near genes chr3L_6_18460001 chr3L_18460001 RAL-340_100b 2270 chr3L 18479046 18479096 chr3L 18479167 18479223 15 122 0.5 6.0 3.2 3.6 177 chr3L 18479046 5` UTR CR44673 + chr3L 18479134 5` UTR CR44673 + chr3L 18479223 5` UTR CR44673 + chr3L_15_18475001 chr3L_18475001 RAL-340_100b 2271 chr3L 18484673 18484718 chr3L 18488617 18488667 30 3956 60.5 44.5 52.5 0.6 3994 chr3L 18484673 intergenic AstC-R2 - chr3L 18486670 3` UTR AstC-R2 - chr3L 18488667 exon AstC-R2 - chr3L_30_18485001 chr3L_18485001 RAL-340_100b 2272 chr3L 18499386 18499432 chr3L 18499489 18499535 13 99 6.5 7.5 7.0 1.6 149 chr3L 18499386 intron AstC-R2 - chr3L 18499460 intron AstC-R2 - chr3L 18499535 intron AstC-R2 - chr3L_13_18495001 chr3L_18495001 RAL-340_100b 2273 chr3L 18506115 18506159 chr3L 18509603 18509647 F-element 15 3486 5.0 7.0 6.0 2.1 3532 chr3L 18506115 intergenic not near genes chr3L 18507881 intergenic not near genes chr3L 18509647 intergenic not near genes chr3L_15_18505001 chr3L_18505001 RAL-340_100b 2274 chr3L 18528608 18528657 chr3L 18537793 18537843 roo 14 9183 11.5 6.0 8.8 1.4 9235 chr3L 18528608 intergenic not near genes chr3L 18533226 intergenic not near genes chr3L 18537843 intergenic not near genes chr3L_14_18530001 chr3L_18530001 RAL-340_100b 2275 chr3L 18567008 18567019 chr3L 18567113 18567130 4 108 17.0 12.5 14.8 0.3 122 chr3L 18567008 intron AstC-R1 + chr3L 18567069 intron AstC-R1 + chr3L 18567130 intron AstC-R1 + chr3L_4_18565001 chr3L_18565001 RAL-340_100b 2276 chr3L 18567025 18567055 chr3L 18567111 18567166 16 109 7.5 10.5 9.0 1.6 141 chr3L 18567025 intron AstC-R1 + chr3L 18567096 intron AstC-R1 + chr3L 18567166 intron AstC-R1 + chr3L_16_18565001 chr3L_18565001 RAL-340_100b 2277 chr3L 18585522 18585556 chr3L 18585622 18585635 10 99 19.0 9.5 14.2 0.7 113 chr3L 18585522 intergenic not near genes chr3L 18585578 intergenic not near genes chr3L 18585635 intergenic not near genes chr3L_10_18585001 chr3L_18585001 RAL-340_100b 2278 chr3L 18590243 18590287 chr3L 18590350 18590360 17 100 7.5 12.0 9.8 1.6 117 chr3L 18590243 intergenic CG7271 + chr3L 18590302 intergenic CG7271 + chr3L 18590360 intergenic CG7271 + chr3L_17_18590001 chr3L_18590001 RAL-340_100b 2279 chr3L 18593935 18593958 chr3L 18595940 18595953 Doc 8 2004 7.5 0.0 3.8 1.7 2018 chr3L 18593935 intergenic term - chr3L 18594944 intergenic not near genes chr3L 18595953 intergenic CR45389 + chr3L_8_18590001 chr3L_18590001 RAL-340_100b 2280 chr3L 18638556 18638569 chr3L 18638675 18638688 8 118 25.0 17.5 21.2 0.4 132 chr3L 18638556 intron MYPT-75D + chr3L 18638622 intron MYPT-75D + chr3L 18638688 intron MYPT-75D + chr3L_8_18635001 chr3L_18635001 RAL-340_100b 2281 chr3L 18638570 18638573 chr3L 18638674 18638692 6 115 23.0 17.0 20.0 0.3 122 chr3L 18638570 intron MYPT-75D + chr3L 18638631 intron MYPT-75D + chr3L 18638692 intron MYPT-75D + chr3L_6_18635001 chr3L_18635001 RAL-340_100b 2282 chr3L 18638574 18638596 chr3L 18638673 18638715 19 117 16.5 16.0 16.2 1.1 141 chr3L 18638574 intron MYPT-75D + chr3L 18638644 intron MYPT-75D + chr3L 18638715 intron MYPT-75D + chr3L_19_18635001 chr3L_18635001 RAL-340_100b 2283 chr3L 18638599 18638605 chr3L 18638718 18638724 5 119 15.5 34.5 25.0 0.2 125 chr3L 18638599 intron MYPT-75D + chr3L 18638662 intron MYPT-75D + chr3L 18638724 intron MYPT-75D + chr3L_5_18635001 chr3L_18635001 RAL-340_100b 2284 chr3L 18648193 18648207 chr3L 18648301 18648323 6 111 10.5 17.0 13.8 0.4 130 chr3L 18648193 intron MYPT-75D + chr3L 18648258 intron MYPT-75D + chr3L 18648323 intron MYPT-75D + chr3L_6_18645001 chr3L_18645001 RAL-340_100b 2285 chr3L 18656166 18656177 chr3L 18656276 18656287 8 110 12.0 9.0 10.5 0.7 121 chr3L 18656166 intron MYPT-75D + chr3L 18656226 intron MYPT-75D + chr3L 18656287 intron MYPT-75D + chr3L_8_18655001 chr3L_18655001 RAL-340_100b 2286 chr3L 18656184 18656210 chr3L 18656269 18656319 9 98 6.5 7.5 7.0 1.1 135 chr3L 18656184 intron MYPT-75D + chr3L 18656252 intron MYPT-75D + chr3L 18656319 intron MYPT-75D + chr3L_9_18655001 chr3L_18655001 RAL-340_100b 2287 chr3L 18701108 18701155 chr3L 18701220 18701262 8 108 9.5 2.5 6.0 1.1 154 chr3L 18701108 intergenic not near genes chr3L 18701185 intergenic not near genes chr3L 18701262 intergenic not near genes chr3L_8_18700001 chr3L_18700001 RAL-340_100b 2288 chr3L 18710737 18710786 chr3L 18718714 18718763 Stalker2 10 7972 4.5 3.0 3.8 2.1 8026 chr3L 18710737 intergenic not near genes chr3L 18714750 intergenic not near genes chr3L 18718763 intergenic not near genes chr3L_10_18710001 chr3L_18710001 RAL-340_100b 2289 chr3L 18736030 18736061 chr3L 18736150 18736180 7 115 13.5 5.5 9.5 0.7 150 chr3L 18736030 intergenic not near genes chr3L 18736105 intergenic not near genes chr3L 18736180 intergenic not near genes chr3L_7_18735001 chr3L_18735001 RAL-340_100b 2290 chr3L 18739098 18739153 chr3L 18739205 18739260 20 106 4.5 2.0 3.2 4.8 162 chr3L 18739098 intergenic not near genes chr3L 18739179 intergenic not near genes chr3L 18739260 intergenic not near genes chr3L_20_18735001 chr3L_18735001 RAL-340_100b 2291 chr3L 18772385 18772436 chr3L 18781091 18781142 roo 33 8703 15.0 12.0 13.5 2.3 8757 chr3L 18772385 intron ftz-f1 - chr3L 18776764 intron ftz-f1 - chr3L 18781142 intron ftz-f1 - chr3L_33_18775001 chr3L_18775001 RAL-340_100b 2292 chr3L 18784370 18784403 chr3L 18784484 18784517 5 109 5.5 5.5 5.5 0.8 147 chr3L 18784370 intron ftz-f1 - chr3L 18784444 intron ftz-f1 - chr3L 18784517 intron ftz-f1 - chr3L_5_18780001 chr3L_18780001 RAL-340_100b 2293 chr3L 18797293 18797334 chr3L 18797396 18797443 16 108 7.5 6.5 7.0 2.0 150 chr3L 18797293 intron ftz-f1 - chr3L 18797368 intron ftz-f1 - chr3L 18797443 intron ftz-f1 - chr3L_16_18795001 chr3L_18795001 RAL-340_100b 2294 chr3L 18843840 18843880 chr3L 18843962 18843988 13 118 5.5 5.0 5.2 2.1 148 chr3L 18843840 intron Indy - chr3L 18843914 intron Indy - chr3L 18843988 intron Indy - chr3L_13_18840001 chr3L_18840001 RAL-340_100b 2295 chr3L 18853983 18854022 chr3L 18854109 18854141 9 125 4.0 2.5 3.2 2.1 158 chr3L 18853983 intergenic CR45387 + chr3L 18854062 intergenic CR45387 + chr3L 18854141 intergenic CR45387 + chr3L_9_18850001 chr3L_18850001 RAL-340_100b 2296 chr3L 18868943 18868988 chr3L 18869049 18869089 23 103 5.5 11.5 8.5 2.4 146 chr3L 18868943 3` UTR Dysb + chr3L 18869016 3` UTR Dysb + chr3L 18869089 3` UTR Dysb + chr3L_23_18865001 chr3L_18865001 RAL-340_100b 2297 chr3L 18885963 18886015 chr3L 18886064 18886065 17 96 1.5 3.0 2.2 5.3 102 chr3L 18885963 intron CG3961 - chr3L 18886014 intron CG3961 - chr3L 18886065 intron CG3961 - chr3L_17_18885001 chr3L_18885001 RAL-340_100b 2298 chr3L 18924480 18924509 chr3L 18924581 18924603 4 98 2.5 10.5 6.5 0.5 123 chr3L 18924480 intron CG32204 - chr3L 18924542 intron CG32204 - chr3L 18924603 intron CG32204 - chr3L_4_18920001 chr3L_18920001 RAL-340_100b 2299 chr3L 18929942 18929956 chr3L 18930050 18930065 4 109 12.0 6.5 9.2 0.4 123 chr3L 18929942 intron CG32204 - chr3L 18930004 intron CG32204 - chr3L 18930065 exon CG32204 - chr3L_4_18930001 chr3L_18930001 RAL-340_100b 2300 chr3L 18933602 18933658 chr3L 18933721 18933776 11 114 7.5 6.5 7.0 1.4 174 chr3L 18933602 intron CG32204 - chr3L 18933689 intron CG32204 - chr3L 18933776 intron CG32204 - chr3L_11_18930001 chr3L_18930001 RAL-340_100b 2301 chr3L 18972371 18972376 chr3L 18972472 18972477 4 101 22.0 12.0 17.0 0.2 106 chr3L 18972371 intergenic not near genes chr3L 18972424 intergenic not near genes chr3L 18972477 intergenic not near genes chr3L_4_18970001 chr3L_18970001 RAL-340_100b 2302 chr3L 18972380 18972385 chr3L 18972469 18972480 4 95 21.5 12.5 17.0 0.2 100 chr3L 18972380 intergenic not near genes chr3L 18972430 intergenic not near genes chr3L 18972480 intergenic not near genes chr3L_4_18970001 chr3L_18970001 RAL-340_100b 2303 chr3L 18972398 18972410 chr3L 18972472 18972511 6 96 14.0 12.0 13.0 0.4 113 chr3L 18972398 intergenic not near genes chr3L 18972454 intergenic not near genes chr3L 18972511 intergenic not near genes chr3L_6_18970001 chr3L_18970001 RAL-340_100b 2304 chr3L 18972411 18972419 chr3L 18972464 18972513 11 92 13.5 12.0 12.8 0.8 102 chr3L 18972411 intergenic not near genes chr3L 18972462 intergenic not near genes chr3L 18972513 intergenic not near genes chr3L_11_18970001 chr3L_18970001 RAL-340_100b 2305 chr3L 19008820 19008869 chr3L 19009176 19009232 jockey 18 359 5.0 12.0 8.5 1.9 412 chr3L 19008820 intron nkd - chr3L 19009026 intron nkd - chr3L 19009232 intron nkd - chr3L_18_19005001 chr3L_19005001 RAL-340_100b 2306 chr3L 19015153 19015216 chr3L 19015261 19015318 11 104 2.0 5.0 3.5 2.4 165 chr3L 19015153 intron nkd - chr3L 19015236 intron nkd - chr3L 19015318 intron nkd - chr3L_11_19015001 chr3L_19015001 RAL-340_100b 2307 chr3L 19111386 19111398 chr3L 19111495 19111508 6 106 17.0 9.0 13.0 0.4 122 chr3L 19111386 intron CG14082 - chr3L 19111447 intron CG14082 - chr3L 19111508 intron CG14082 - chr3L_6_19110001 chr3L_19110001 RAL-340_100b 2308 chr3L 19111399 19111408 chr3L 19111489 19111508 9 105 11.5 8.0 9.8 0.8 109 chr3L 19111399 intron CG14082 - chr3L 19111454 intron CG14082 - chr3L 19111508 intron CG14082 - chr3L_9_19110001 chr3L_19110001 RAL-340_100b 2309 chr3L 19115613 19115630 chr3L 19115818 19115831 BS 5 201 22.0 9.0 15.5 0.3 218 chr3L 19115613 intron CG14082 - chr3L 19115722 intron CG14082 - chr3L 19115831 intron CG14082 - chr3L_5_19115001 chr3L_19115001 RAL-340_100b 2310 chr3L 19115639 19115641 chr3L 19115844 19115846 BS 4 204 19.5 15.0 17.2 0.2 207 chr3L 19115639 intron CG14082 - chr3L 19115742 intron CG14082 - chr3L 19115846 intron CG14082 - chr3L_4_19115001 chr3L_19115001 RAL-340_100b 2311 chr3L 19115647 19115648 chr3L 19115835 19115853 BS 4 198 18.0 11.5 14.8 0.3 206 chr3L 19115647 intron CG14082 - chr3L 19115750 intron CG14082 - chr3L 19115853 intron CG14082 - chr3L_4_19115001 chr3L_19115001 RAL-340_100b 2312 chr3L 19115650 19115662 chr3L 19115823 19115867 BS 6 192 10.5 10.5 10.5 0.5 217 chr3L 19115650 intron CG14082 - chr3L 19115758 intron CG14082 - chr3L 19115867 intron CG14082 - chr3L_6_19115001 chr3L_19115001 RAL-340_100b 2313 chr3L 19117020 19117076 chr3L 19124492 19124548 mdg1 46 7468 5.5 9.0 7.2 5.6 7528 chr3L 19117020 intron CG14082 - chr3L 19120784 intron CG14082 - chr3L 19124548 intron CG14082 - chr3L_46_19120001 chr3L_19120001 RAL-340_100b 2314 chr3L 19138127 19138155 chr3L 19138234 19138274 6 111 0.0 6.5 3.2 1.4 147 chr3L 19138127 intron CG14082 - chr3L 19138200 intron CG14082 - chr3L 19138274 intron CG14082 - chr3L_6_19135001 chr3L_19135001 RAL-340_100b 2315 chr3L 19208034 19208084 chr3L 19209433 19209469 Doc 22 1394 5.5 7.0 6.2 3.1 1435 chr3L 19208034 intron fz2 - chr3L 19208752 intron fz2 - chr3L 19209469 intron fz2 - chr3L_22_19205001 chr3L_19205001 RAL-340_100b 2316 chr3L 9307795 9307796 chr3L 19220633 19220633 4 9912837 24.5 52.0 38.2 0.1 9912838 chr3L 9307795 intergenic not near genes chr3L 14264214 intergenic not near genes chr3L 19220633 intron fz2 - chr3L_4_14260001 chr3L_14260001 RAL-340_100b 2317 chr3L 18417066 18417066 chr3L 19220633 19220633 5 803567 41.0 52.0 46.5 0.1 803567 chr3L 18417066 intergenic not near genes chr3L 18818850 intron CG14073 - chr3L 19220633 intron fz2 - chr3L_5_18815001 chr3L_18815001 RAL-340_100b 2318 chr3L 19220633 19220633 chr3L 22908066 22908067 22 3687434 54.0 65.5 59.8 0.4 3687434 chr3L 19220633 intron fz2 - chr3L 21064350 intron siz + chr3L 22908067 intergenic not near genes chr3L_22_21060001 chr3L_21060001 RAL-340_100b 2319 chr3L 18417066 18417066 chr3L 19220634 19220634 6 803568 41.0 52.5 46.8 0.1 803568 chr3L 18417066 intergenic not near genes chr3L 18818850 intron CG14073 - chr3L 19220634 intron fz2 - chr3L_6_18815001 chr3L_18815001 RAL-340_100b 2320 chr3L 19220634 19220634 chr3L 22908066 22908068 10 3687433 54.0 65.5 59.8 0.2 3687434 chr3L 19220634 intron fz2 - chr3L 21064351 intron siz + chr3L 22908068 intergenic not near genes chr3L_10_21060001 chr3L_21060001 RAL-340_100b 2321 chr3L 18417066 18417066 chr3L 19220635 19220635 5 803569 41.0 51.5 46.2 0.1 803569 chr3L 18417066 intergenic not near genes chr3L 18818850 intron CG14073 - chr3L 19220635 intron fz2 - chr3L_5_18815001 chr3L_18815001 RAL-340_100b 2322 chr3L 19220635 19220635 chr3L 22908066 22908066 4 3687431 54.0 65.5 59.8 0.1 3687431 chr3L 19220635 intron fz2 - chr3L 21064350 intron siz + chr3L 22908066 intergenic not near genes chr3L_4_21060001 chr3L_21060001 RAL-340_100b 2323 chr3L 9307795 9307796 chr3L 19220636 19220636 17 9912841 24.5 51.5 38.0 0.4 9912841 chr3L 9307795 intergenic not near genes chr3L 14264216 intergenic not near genes chr3L 19220636 intron fz2 - chr3L_17_14260001 chr3L_14260001 RAL-340_100b 2324 chr3L 18417066 18417066 chr3L 19220636 19220636 4 803570 41.0 51.5 46.2 0.1 803570 chr3L 18417066 intergenic not near genes chr3L 18818851 intron CG14073 - chr3L 19220636 intron fz2 - chr3L_4_18815001 chr3L_18815001 RAL-340_100b 2325 chr3L 19220636 19220636 chr3L 22908066 22908067 12 3687430 54.0 65.5 59.8 0.2 3687431 chr3L 19220636 intron fz2 - chr3L 21064352 intron siz + chr3L 22908067 intergenic not near genes chr3L_12_21060001 chr3L_21060001 RAL-340_100b 2326 chr3L 9307795 9307796 chr3L 19220637 19220637 26 9912841 24.5 52.0 38.2 0.7 9912842 chr3L 9307795 intergenic not near genes chr3L 14264216 intergenic not near genes chr3L 19220637 intron fz2 - chr3L_26_14260001 chr3L_14260001 RAL-340_100b 2327 chr3L 18417066 18417066 chr3L 19220637 19220637 7 803571 41.0 52.0 46.5 0.1 803571 chr3L 18417066 intergenic not near genes chr3L 18818852 intron CG14073 - chr3L 19220637 intron fz2 - chr3L_7_18815001 chr3L_18815001 RAL-340_100b 2328 chr3L 19220637 19220637 chr3L 22908066 22908067 21 3687429 54.5 65.5 60.0 0.3 3687430 chr3L 19220637 intron fz2 - chr3L 21064352 intron siz + chr3L 22908067 intergenic not near genes chr3L_21_21060001 chr3L_21060001 RAL-340_100b 2329 chr3L 19262187 19262244 chr3L 19262294 19262351 19 107 3.0 4.0 3.5 4.2 164 chr3L 19262187 3` UTR Bet1 + chr3L 19262269 3` UTR,3` UTR Bet1 +,Max - chr3L 19262351 3` UTR,3` UTR Bet1 +,Max - chr3L_19_19260001 chr3L_19260001 RAL-340_100b 2330 chr3L 19269791 19269848 chr3L 19270020 19270047 41 221 11.5 13.5 12.5 3.0 256 chr3L 19269791 intron,exon CG14085 +,CG14088 - chr3L 19269919 intron,exon CG14085 +,CG14088 - chr3L 19270047 intron,exon CG14085 +,CG14088 - chr3L_41_19265001 chr3L_19265001 RAL-340_100b 2331 chr3L 19265228 19265238 chr3L 19272785 19272795 7 7558 42.0 66.0 54.0 0.1 7567 chr3L 19265228 3` UTR,exon CG42374 +,CG9666 + chr3L 19269012 intergenic CG9629 -,CG14085 + chr3L 19272795 exon CG14085 + chr3L_7_19265001 chr3L_19265001 RAL-340_100b 2332 chr3L 19265252 19265262 chr3L 19272815 19272819 4 7558 50.0 56.0 53.0 0.1 7567 chr3L 19265252 3` UTR,exon CG42374 +,CG9666 + chr3L 19269036 intergenic CG9629 -,CG14085 + chr3L 19272819 exon CG14085 + chr3L_4_19265001 chr3L_19265001 RAL-340_100b 2333 chr3L 19265249 19265256 chr3L 19272821 19272832 8 7565 49.5 55.0 52.2 0.2 7583 chr3L 19265249 3` UTR,exon CG42374 +,CG9666 + chr3L 19269040 intergenic CG9629 -,CG14085 + chr3L 19272832 exon CG14085 + chr3L_8_19265001 chr3L_19265001 RAL-340_100b 2334 chr3L 19342740 19342774 chr3L 19342856 19342890 7 114 8.5 8.5 8.5 0.7 150 chr3L 19342740 3` UTR CG32206 - chr3L 19342815 3` UTR CG32206 - chr3L 19342890 3` UTR CG32206 - chr3L_7_19340001 chr3L_19340001 RAL-340_100b 2335 chr3L 19346843 19346884 chr3L 19346953 19346987 7 100 1.0 23.5 12.2 0.5 144 chr3L 19346843 intron CG32206 - chr3L 19346915 intron CG32206 - chr3L 19346987 intron CG32206 - chr3L_7_19345001 chr3L_19345001 RAL-340_100b 2336 chr3L 19409898 19409898 chr3L 21448026 21448026 8 2038128 40.0 37.0 38.5 0.2 2038128 chr3L 19409898 intron CG32206 - chr3L 20428962 exon CG5262 - chr3L 21448026 3` UTR Syx7 + chr3L_8_20425001 chr3L_20425001 RAL-340_100b 2337 chr3L 19430364 19430428 chr3L 19430475 19430531 10 96 0.5 4.0 2.2 3.1 167 chr3L 19430364 intergenic not near genes chr3L 19430448 intergenic not near genes chr3L 19430531 intergenic not near genes chr3L_10_19430001 chr3L_19430001 RAL-340_100b 2338 chr3L 19439151 19439196 chr3L 19439255 19439265 7 98 7.5 4.5 6.0 1.0 114 chr3L 19439151 intergenic not near genes chr3L 19439208 intergenic not near genes chr3L 19439265 intergenic not near genes chr3L_7_19435001 chr3L_19435001 RAL-340_100b 2339 chr3L 19488476 19488483 chr3L 19488572 19488590 4 104 17.0 16.0 16.5 0.2 114 chr3L 19488476 intergenic pncr009:3L -,CG32212 + chr3L 19488533 intergenic pncr009:3L -,CG32212 + chr3L 19488590 intergenic pncr009:3L -,CG32212 + chr3L_4_19485001 chr3L_19485001 RAL-340_100b 2340 chr3L 19527904 19527924 chr3L 19528008 19528028 5 103 20.0 12.5 16.2 0.3 124 chr3L 19527904 intergenic not near genes chr3L 19527966 intergenic not near genes chr3L 19528028 intergenic not near genes chr3L_5_19525001 chr3L_19525001 RAL-340_100b 2341 chr3L 19527925 19527957 chr3L 19527999 19528035 13 98 14.5 13.5 14.0 0.9 110 chr3L 19527925 intergenic not near genes chr3L 19527980 intergenic not near genes chr3L 19528035 intergenic not near genes chr3L_13_19525001 chr3L_19525001 RAL-340_100b 2342 chr3L 19544214 19544235 chr3L 19544315 19544334 8 99 12.5 6.5 9.5 0.8 120 chr3L 19544214 intergenic CG9279 -,l(3)76BDr - chr3L 19544274 intergenic l(3)76BDr -,CG9279 - chr3L 19544334 intergenic l(3)76BDr -,CG9279 - chr3L_8_19540001 chr3L_19540001 RAL-340_100b 2343 chr3L 19544237 19544264 chr3L 19544311 19544343 15 95 8.5 7.5 8.0 1.7 106 chr3L 19544237 intergenic CG9279 -,l(3)76BDr - chr3L 19544290 intergenic l(3)76BDr -,CG9279 - chr3L 19544343 intergenic l(3)76BDr -,CG9279 - chr3L_15_19540001 chr3L_19540001 RAL-340_100b 2344 chr3L 19605566 19605574 chr3L 19605679 19605687 4 113 4.0 13.0 8.5 0.4 121 chr3L 19605566 intron lush - chr3L 19605626 intron lush - chr3L 19605687 intron lush - chr3L_4_19605001 chr3L_19605001 RAL-340_100b 2345 chr3L 19785449 19785478 chr3L 19785537 19785569 8 98 10.5 6.5 8.5 0.8 120 chr3L 19785449 intron,intron CG42637 -,Gyc76C - chr3L 19785509 intron,intron CG42637 -,Gyc76C - chr3L 19785569 intron,intron CG42637 -,Gyc76C - chr3L_8_19785001 chr3L_19785001 RAL-340_100b 2346 chr3L 19820273 19820315 chr3L 19827847 19827874 412 26 7572 13.5 8.0 10.8 2.2 7601 chr3L 19820273 intron Deaf1 + chr3L 19824074 intron Deaf1 + chr3L 19827874 intron Deaf1 + chr3L_26_19820001 chr3L_19820001 RAL-340_100b 2347 chr3L 19848487 19848511 chr3L 19857702 19857726 roo 11 9215 16.0 16.5 16.2 0.6 9239 chr3L 19848487 intron Papss + chr3L 19853106 intron Papss + chr3L 19857726 intron Papss + chr3L_11_19850001 chr3L_19850001 RAL-340_100b 2348 chr3L 19848513 19848528 chr3L 19857693 19857743 roo 14 9205 10.5 13.0 11.8 1.1 9230 chr3L 19848513 intron Papss + chr3L 19853128 intron Papss + chr3L 19857743 intron Papss + chr3L_14_19850001 chr3L_19850001 RAL-340_100b 2349 chr3L 19861799 19861843 chr3L 19863612 19863656 S-element 13 1813 11.0 9.5 10.2 1.2 1857 chr3L 19861799 5` UTR CR45433 + chr3L 19862728 intergenic not near genes chr3L 19863656 intergenic not near genes chr3L_13_19860001 chr3L_19860001 RAL-340_100b 2350 chr3L 19899867 19899922 chr3L 19899989 19900039 27 121 4.5 5.5 5.0 4.5 172 chr3L 19899867 intron,intron Mi-2 -,Su(Tpl) - chr3L 19899953 intron,intron Mi-2 -,Su(Tpl) - chr3L 19900039 intron,intron Mi-2 -,Su(Tpl) - chr3L_27_19895001 chr3L_19895001 RAL-340_100b 2351 chr3L 19905154 19905210 chr3L 19905507 19905564 16 352 7.5 1.5 4.5 2.9 410 chr3L 19905154 intron,intron Mi-2 -,Su(Tpl) - chr3L 19905359 intron,intron Mi-2 -,Su(Tpl) - chr3L 19905564 intron,intron Mi-2 -,Su(Tpl) - chr3L_16_19905001 chr3L_19905001 RAL-340_100b 2352 chr3L 19925366 19925386 chr3L 19925526 19925538 8 157 11.0 7.5 9.2 0.8 172 chr3L 19925366 intron Grasp65 + chr3L 19925452 intron Grasp65 + chr3L 19925538 intron Grasp65 + chr3L_8_19925001 chr3L_19925001 RAL-340_100b 2353 chr3L 19925389 19925419 chr3L 19925538 19925563 9 155 3.5 8.5 6.0 1.3 174 chr3L 19925389 intron Grasp65 + chr3L 19925476 intron Grasp65 + chr3L 19925563 exon Grasp65 + chr3L_9_19925001 chr3L_19925001 RAL-340_100b 2354 chr3L 19933511 19933560 chr3L 19934358 19934407 21 846 8.0 3.5 5.8 3.1 896 chr3L 19933511 intergenic CR45678 + chr3L 19933959 5` UTR CR45678 + chr3L 19934407 intergenic CR45678 + chr3L_21_19930001 chr3L_19930001 RAL-340_100b 2355 chr3L 19957528 19957531 chr3L 21448026 21448026 5 1490497 27.0 37.0 32.0 0.2 1490498 chr3L 19957528 intron Ac76E + chr3L 20702777 intergenic not near genes chr3L 21448026 3` UTR Syx7 + chr3L_5_20700001 chr3L_20700001 RAL-340_100b 2356 chr3L 19961255 19961307 chr3L 19961491 19961506 20 230 6.5 3.5 5.0 3.3 251 chr3L 19961255 intron Ac76E + chr3L 19961380 intron Ac76E + chr3L 19961506 intron Ac76E + chr3L_20_19960001 chr3L_19960001 RAL-340_100b 2357 chr3L 20023713 20023764 chr3L 20023863 20023895 37 147 6.0 8.0 7.0 4.6 182 chr3L 20023713 intron kug + chr3L 20023804 intron kug + chr3L 20023895 intron kug + chr3L_37_20020001 chr3L_20020001 RAL-340_100b 2358 chr3L 20086767 20086805 chr3L 20086868 20086908 23 100 8.0 0.0 4.0 4.6 141 chr3L 20086767 intron sNPF-R - chr3L 20086838 intron sNPF-R - chr3L 20086908 intron sNPF-R - chr3L_23_20085001 chr3L_20085001 RAL-340_100b 2359 chr3L 20096063 20096117 chr3L 20096192 20096241 15 122 7.0 1.5 4.2 2.9 178 chr3L 20096063 intergenic not near genes chr3L 20096152 intergenic not near genes chr3L 20096241 intergenic not near genes chr3L_15_20095001 chr3L_20095001 RAL-340_100b 2360 chr3L 20113468 20113511 chr3L 20113572 20113606 25 114 2.5 5.0 3.8 5.2 138 chr3L 20113468 intergenic not near genes chr3L 20113537 intergenic not near genes chr3L 20113606 intergenic not near genes chr3L_25_20110001 chr3L_20110001 RAL-340_100b 2361 chr3L 20113635 20113690 chr3L 20122917 20122938 roo 19 9278 7.5 8.5 8.0 2.1 9303 chr3L 20113635 intergenic not near genes chr3L 20118286 intergenic not near genes chr3L 20122938 intergenic not near genes chr3L_19_20115001 chr3L_20115001 RAL-340_100b 2362 chr3L 20143059 20143068 chr3L 20143164 20143173 7 105 19.5 9.5 14.5 0.5 114 chr3L 20143059 intergenic not near genes chr3L 20143116 intergenic not near genes chr3L 20143173 intergenic not near genes chr3L_7_20140001 chr3L_20140001 RAL-340_100b 2363 chr3L 20143069 20143092 chr3L 20143163 20143171 9 100 19.0 9.5 14.2 0.6 102 chr3L 20143069 intergenic not near genes chr3L 20143120 intergenic not near genes chr3L 20143171 intergenic not near genes chr3L_9_20140001 chr3L_20140001 RAL-340_100b 2364 chr3L 20143093 20143117 chr3L 20143158 20143161 10 95 16.0 11.5 13.8 0.7 68 chr3L 20143093 intergenic not near genes chr3L 20143127 intergenic not near genes chr3L 20143161 intergenic not near genes chr3L_10_20140001 chr3L_20140001 RAL-340_100b 2365 chr3L 20148268 20148313 chr3L 20148373 20148420 9 111 7.5 5.5 6.5 1.2 152 chr3L 20148268 intergenic not near genes chr3L 20148344 intergenic not near genes chr3L 20148420 intergenic not near genes chr3L_9_20145001 chr3L_20145001 RAL-340_100b 2366 chr3L 20158881 20158913 chr3L 20159042 20159080 16 165 14.5 10.5 12.5 1.2 199 chr3L 20158881 intron CG42674 - chr3L 20158980 intron CG42674 - chr3L 20159080 intron CG42674 - chr3L_16_20155001 chr3L_20155001 RAL-340_100b 2367 chr3L 20158916 20158928 chr3L 20159083 20159095 9 167 10.0 24.5 17.2 0.5 179 chr3L 20158916 intron CG42674 - chr3L 20159006 intron CG42674 - chr3L 20159095 intron CG42674 - chr3L_9_20155001 chr3L_20155001 RAL-340_100b 2368 chr3L 20345605 20345611 chr3L 20345711 20345717 4 106 20.0 10.0 15.0 0.2 112 chr3L 20345605 intergenic Rbbp5 - chr3L 20345661 intergenic Rbbp5 - chr3L 20345717 intergenic Rbbp5 - chr3L_4_20345001 chr3L_20345001 RAL-340_100b 2369 chr3L 20345612 20345639 chr3L 20345697 20345735 16 101 11.0 6.0 8.5 1.7 123 chr3L 20345612 intergenic Rbbp5 - chr3L 20345674 intergenic Rbbp5 - chr3L 20345735 3` UTR Rbbp5 - chr3L_16_20345001 chr3L_20345001 RAL-340_100b 2370 chr3L 20386925 20386972 chr3L 20387050 20387099 15 125 7.5 9.0 8.2 1.6 174 chr3L 20386925 intron fbl + chr3L 20387012 intron fbl + chr3L 20387099 intron fbl + chr3L_15_20385001 chr3L_20385001 RAL-340_100b 2371 chr3L 20462563 20462597 chr3L 20462669 20462703 5 106 8.5 5.5 7.0 0.6 140 chr3L 20462563 intron atk - chr3L 20462633 intron atk - chr3L 20462703 intron atk - chr3L_5_20460001 chr3L_20460001 RAL-340_100b 2372 chr3L 20476735 20476748 chr3L 20484357 20484357 springer 9 7622 23.0 8.5 15.8 0.5 7622 chr3L 20476735 3` UTR isoQC + chr3L 20480546 intergenic not near genes chr3L 20484357 3` UTR ZnT77C - chr3L_9_20480001 chr3L_20480001 RAL-340_100b 2373 chr3L 20476751 20476778 chr3L 20484354 20484366 springer 15 7617 10.5 7.0 8.8 1.5 7615 chr3L 20476751 3` UTR isoQC + chr3L 20480558 intergenic not near genes chr3L 20484366 3` UTR ZnT77C - chr3L_15_20480001 chr3L_20480001 RAL-340_100b 2374 chr3L 20487640 20487669 chr3L 20488116 20488140 INE-1 18 475 17.5 10.0 13.8 1.2 500 chr3L 20487640 intron ZnT77C - chr3L 20487890 intron ZnT77C - chr3L 20488140 exon ZnT77C - chr3L_18_20485001 chr3L_20485001 RAL-340_100b 2375 chr3L 20487671 20487674 chr3L 20488112 20488150 INE-1 5 461 12.0 7.5 9.8 0.5 479 chr3L 20487671 intron ZnT77C - chr3L 20487910 intron ZnT77C - chr3L 20488150 exon ZnT77C - chr3L_5_20485001 chr3L_20485001 RAL-340_100b 2376 chr3L 20525228 20525228 chr3L 24821492 24821494 21 4296265 23.0 47.5 35.2 0.6 4296266 chr3L 20525228 intron CG4825 - chr3L 22673361 intron CG14457 + chr3L 24821494 intergenic not near genes chr3L_21_22670001 chr3L_22670001 RAL-340_100b 2377 chr3L 20525229 20525229 chr3L 24821491 24821494 24 4296264 24.0 47.0 35.5 0.7 4296265 chr3L 20525229 intron CG4825 - chr3L 22673362 intron CG14457 + chr3L 24821494 intergenic not near genes chr3L_24_22670001 chr3L_22670001 RAL-340_100b 2378 chr3L 20525230 20525231 chr3L 24821493 24821494 16 4296264 23.5 48.0 35.8 0.4 4296264 chr3L 20525230 intron CG4825 - chr3L 22673362 intron CG14457 + chr3L 24821494 intergenic not near genes chr3L_16_22670001 chr3L_22670001 RAL-340_100b 2379 chr3L 20590040 20590091 chr3L 20590604 20590655 412 18 559 5.0 7.0 6.0 2.6 615 chr3L 20590040 intergenic not near genes chr3L 20590348 intergenic not near genes chr3L 20590655 intergenic not near genes chr3L_18_20590001 chr3L_20590001 RAL-340_100b 2380 chr3L 20625608 20625641 chr3L 20625721 20625753 12 111 10.5 7.5 9.0 1.2 145 chr3L 20625608 intergenic not near genes chr3L 20625680 intergenic not near genes chr3L 20625753 intergenic not near genes chr3L_12_20625001 chr3L_20625001 RAL-340_100b 2381 chr3L 20625644 20625651 chr3L 20625717 20625764 5 97 8.0 6.5 7.2 0.6 120 chr3L 20625644 intergenic not near genes chr3L 20625704 intergenic not near genes chr3L 20625764 intergenic not near genes chr3L_5_20625001 chr3L_20625001 RAL-340_100b 2382 chr3L 20710742 20710793 chr3L 20710835 20710895 20 99 5.5 12.0 8.8 2.0 153 chr3L 20710742 intergenic not near genes chr3L 20710818 intergenic not near genes chr3L 20710895 intergenic not near genes chr3L_20_20710001 chr3L_20710001 RAL-340_100b 2383 chr3L 20821265 20821308 chr3L 20824898 20824944 NOF 12 3633 7.0 15.5 11.2 1.0 3679 chr3L 20821265 intron Pka-R1 + chr3L 20823104 intron Pka-R1 + chr3L 20824944 intron Pka-R1 + chr3L_12_20820001 chr3L_20820001 RAL-340_100b 2384 chr3L 20826877 20826928 chr3L 20830669 20830720 21 3784 14.5 8.0 11.2 1.7 3843 chr3L 20826877 intron Pka-R1 + chr3L 20828798 intron Pka-R1 + chr3L 20830720 intron Pka-R1 + chr3L_21_20825001 chr3L_20825001 RAL-340_100b 2385 chr3L 20840920 20840951 chr3L 20847315 20847344 11 6395 73.5 83.5 78.5 0.1 6424 chr3L 20840920 exon CSN3 - chr3L 20844132 3` UTR CG11456 + chr3L 20847344 exon CG32432 - chr3L_11_20840001 chr3L_20840001 RAL-340_100b 2386 chr3L 20849257 20849299 chr3L 20849357 20849388 8 102 6.5 5.0 5.8 1.2 131 chr3L 20849257 intron CG32432 - chr3L 20849322 intron CG32432 - chr3L 20849388 intron CG32432 - chr3L_8_20845001 chr3L_20845001 RAL-340_100b 2387 chr3L 20863580 20863626 chr3L 20863796 20863802 14 210 4.5 5.5 5.0 2.3 222 chr3L 20863580 intron CG32432 - chr3L 20863691 intron CG32432 - chr3L 20863802 intron CG32432 - chr3L_14_20860001 chr3L_20860001 RAL-340_100b 2388 chr3L 20864634 20864671 chr3L 20864729 20864768 22 98 8.5 8.5 8.5 2.3 134 chr3L 20864634 intron CG32432 - chr3L 20864701 intron CG32432 - chr3L 20864768 intron CG32432 - chr3L_22_20860001 chr3L_20860001 RAL-340_100b 2389 chr3L 20890466 20890521 chr3L 20890567 20890585 5 86 15.0 7.5 11.2 0.4 119 chr3L 20890466 intergenic not near genes chr3L 20890526 intergenic not near genes chr3L 20890585 intergenic not near genes chr3L_5_20890001 chr3L_20890001 RAL-340_100b 2390 chr3L 21014891 21014947 chr3L 21023397 21023453 Tirant 29 8498 7.5 14.5 11.0 2.4 8562 chr3L 21014891 intron skd - chr3L 21019172 intron skd - chr3L 21023453 intron skd - chr3L_29_21015001 chr3L_21015001 RAL-340_100b 2391 chr3L 21067934 21067945 chr3L 21068039 21068050 7 105 20.5 12.5 16.5 0.4 116 chr3L 21067934 intron siz + chr3L 21067992 intron siz + chr3L 21068050 intron siz + chr3L_7_21065001 chr3L_21065001 RAL-340_100b 2392 chr3L 21067947 21067980 chr3L 21068032 21068071 22 93 11.0 11.0 11.0 1.8 124 chr3L 21067947 intron siz + chr3L 21068009 intron siz + chr3L 21068071 intron siz + chr3L_22_21065001 chr3L_21065001 RAL-340_100b 2393 chr3L 21082185 21082238 chr3L 21082288 21082341 10 100 8.5 5.5 7.0 1.2 156 chr3L 21082185 intron ko - chr3L 21082263 intron ko - chr3L 21082341 intron ko - chr3L_10_21080001 chr3L_21080001 RAL-340_100b 2394 chr3L 21151841 21151895 chr3L 21156950 21157004 flea 28 5107 14.0 4.5 9.2 2.7 5163 chr3L 21151841 intron Ac78C - chr3L 21154422 intron Ac78C - chr3L 21157004 intron Ac78C - chr3L_28_21150001 chr3L_21150001 RAL-340_100b 2395 chr3L 21243730 21243743 chr3L 21251309 21251325 412 8 7582 25.0 16.0 20.5 0.4 7595 chr3L 21243730 intron Eip78C + chr3L 21247528 intron Eip78C + chr3L 21251325 intron Eip78C + chr3L_8_21245001 chr3L_21245001 RAL-340_100b 2396 chr3L 21243746 21243770 chr3L 21251309 21251325 412 6 7567 11.0 16.0 13.5 0.4 7579 chr3L 21243746 intron Eip78C + chr3L 21247536 intron Eip78C + chr3L 21251325 intron Eip78C + chr3L_6_21245001 chr3L_21245001 RAL-340_100b 2397 chr3L 21301712 21301764 chr3L 21301818 21301875 26 105 6.5 7.0 6.8 3.3 163 chr3L 21301712 5` UTR CR45432 + chr3L 21301794 5` UTR,3` UTR CR45432 +,CG11309 - chr3L 21301875 5` UTR,3` UTR CR45432 +,CG11309 - chr3L_26_21300001 chr3L_21300001 RAL-340_100b 2398 chr3L 21306123 21306157 chr3L 21315307 21315341 roo 12 9182 4.5 1.0 2.8 3.2 9218 chr3L 21306123 3` UTR CG7632 + chr3L 21310732 intron Pc - chr3L 21315341 3` UTR Pc - chr3L_12_21310001 chr3L_21310001 RAL-340_100b 2399 chr3L 21306167 21306177 chr3L 21315305 21315361 roo 5 9169 3.5 1.0 2.2 1.6 9194 chr3L 21306167 3` UTR,3` UTR CG7632 +,Pc - chr3L 21310764 intron Pc - chr3L 21315361 3` UTR Pc - chr3L_5_21310001 chr3L_21310001 RAL-340_100b 2400 chr3L 21372701 21372748 chr3L 21379234 21379281 McClintock 19 6530 6.0 10.5 8.2 2.1 6580 chr3L 21372701 intergenic not near genes chr3L 21375991 intergenic not near genes chr3L 21379281 intergenic not near genes chr3L_19_21375001 chr3L_21375001 RAL-340_100b 2401 chr3L 21399432 21399442 chr3L 21399540 21399550 8 108 59.5 37.5 48.5 0.2 118 chr3L 21399432 intron rgn + chr3L 21399491 intron rgn + chr3L 21399550 intron rgn + chr3L_8_21395001 chr3L_21395001 RAL-340_100b 2402 chr3L 21406977 21407028 chr3L 21407080 21407080 23 96 14.5 12.5 13.5 1.6 103 chr3L 21406977 intron rgn + chr3L 21407028 intron rgn + chr3L 21407080 intron rgn + chr3L_23_21405001 chr3L_21405001 RAL-340_100b 2403 chr3L 4341329 4341502 chr3L 21448026 21448026 30 17106688 34.5 37.0 35.8 0.8 17106697 chr3L 4341329 intron Cip4 - chr3L 12894678 3` UTR CG14118 + chr3L 21448026 3` UTR Syx7 + chr3L_30_12890001 chr3L_12890001 RAL-340_100b 2404 chr3L 7201270 7201270 chr3L 21448026 21448026 4 14246756 55.0 37.0 46.0 0.1 14246756 chr3L 7201270 intergenic not near genes chr3L 14324648 intron,intron fz +,CR45025 - chr3L 21448026 3` UTR Syx7 + chr3L_4_14320001 chr3L_14320001 RAL-340_100b 2405 chr3L 19409897 19409898 chr3L 21448026 21448026 4 2038128 40.0 37.0 38.5 0.1 2038129 chr3L 19409897 intron CG32206 - chr3L 20428962 exon CG5262 - chr3L 21448026 3` UTR Syx7 + chr3L_4_20425001 chr3L_20425001 RAL-340_100b 2406 chr3L 4341331 4341333 chr3L 21448027 21448027 18 17106695 51.0 37.0 44.0 0.4 17106696 chr3L 4341331 intron Cip4 - chr3L 12894679 3` UTR CG14118 + chr3L 21448027 3` UTR Syx7 + chr3L_18_12890001 chr3L_12890001 RAL-340_100b 2407 chr3L 21498828 21498851 chr3L 21500488 21500512 1360 15 1659 13.5 16.5 15.0 0.9 1684 chr3L 21498828 5` UTR,intron CR43933 +,Glg1 - chr3L 21499670 intron Glg1 - chr3L 21500512 intron Glg1 - chr3L_15_21495001 chr3L_21495001 RAL-340_100b 2408 chr3L 21498853 21498862 chr3L 21500486 21500512 1360 4 1645 10.0 16.0 13.0 0.3 1659 chr3L 21498853 intron Glg1 - chr3L 21499682 intron Glg1 - chr3L 21500512 intron Glg1 - chr3L_4_21495001 chr3L_21495001 RAL-340_100b 2409 chr3L 21530391 21530446 chr3L 21530499 21530545 24 101 8.0 5.5 6.8 3.1 154 chr3L 21530391 3` UTR Mkrn1 - chr3L 21530468 3` UTR Mkrn1 - chr3L 21530545 3` UTR Mkrn1 - chr3L_24_21530001 chr3L_21530001 RAL-340_100b 2410 chr3L 21749301 21749333 chr3L 21754481 21754484 Doc 6 5171 19.5 12.0 15.8 0.4 5183 chr3L 21749301 intron Syn1 - chr3L 21751892 intron Syn1 - chr3L 21754484 intron Syn1 - chr3L_6_21750001 chr3L_21750001 RAL-340_100b 2411 chr3L 21749335 21749352 chr3L 21754473 21754494 Doc 12 5157 11.5 8.5 10.0 1.1 5159 chr3L 21749335 intron Syn1 - chr3L 21751914 intron Syn1 - chr3L 21754494 intron Syn1 - chr3L_12_21750001 chr3L_21750001 RAL-340_100b 2412 chr3L 21769028 21769039 chr3L 21769140 21769140 11 111 19.0 6.0 12.5 0.8 112 chr3L 21769028 intron,intron Syn1 -,CG42689 + chr3L 21769084 intron,intron Syn1 -,CG42689 + chr3L 21769140 intron,intron Syn1 -,CG42689 + chr3L_11_21765001 chr3L_21765001 RAL-340_100b 2413 chr3L 21769065 21769087 chr3L 21769139 21769199 8 102 6.5 6.0 6.2 1.1 134 chr3L 21769065 intron,intron Syn1 -,CG42689 + chr3L 21769132 intron,intron Syn1 -,CG42689 + chr3L 21769199 intron,intron Syn1 -,CG42689 + chr3L_8_21765001 chr3L_21765001 RAL-340_100b 2414 chr3L 21770022 21770034 chr3L 21770133 21770141 4 110 18.5 14.0 16.2 0.2 119 chr3L 21770022 5` UTR,intron,5` UTR Syn1 -,CG42689 +,CG7370 + chr3L 21770082 5` UTR,intron,intron Syn1 -,CG42689 +,CG7370 + chr3L 21770141 5` UTR,intron,intron Syn1 -,CG42689 +,CG7370 + chr3L_4_21770001 chr3L_21770001 RAL-340_100b 2415 chr3L 21799934 21799966 chr3L 21800022 21800075 15 106 4.5 3.5 4.0 3.0 141 chr3L 21799934 intergenic not near genes chr3L 21800004 intergenic not near genes chr3L 21800075 intergenic not near genes chr3L_15_21795001 chr3L_21795001 RAL-340_100b 2416 chr3L 21824479 21824532 chr3L 21824603 21824643 7 121 9.0 5.5 7.2 0.9 164 chr3L 21824479 3` UTR CG7407 + chr3L 21824561 3` UTR CG7407 + chr3L 21824643 intergenic CG7407 +,CG7414 + chr3L_7_21820001 chr3L_21820001 RAL-340_100b 2417 chr3L 21828918 21828965 chr3L 21829030 21829063 13 103 6.0 6.0 6.0 1.9 145 chr3L 21828918 intergenic CR43309 -,CG32448 - chr3L 21828990 intergenic CR43309 - chr3L 21829063 intergenic CR43309 - chr3L_13_21825001 chr3L_21825001 RAL-340_100b 2418 chr3L 21836705 21836724 chr3L 21836816 21836835 20 110 30.5 12.5 21.5 0.9 130 chr3L 21836705 3` UTR P5CDh1 - chr3L 21836770 3` UTR P5CDh1 - chr3L 21836835 3` UTR P5CDh1 - chr3L_20_21835001 chr3L_21835001 RAL-340_100b 2419 chr3L 21836728 21836763 chr3L 21836815 21836864 43 106 13.5 11.5 12.5 3.2 136 chr3L 21836728 3` UTR P5CDh1 - chr3L 21836796 3` UTR P5CDh1 - chr3L 21836864 3` UTR P5CDh1 - chr3L_43_21835001 chr3L_21835001 RAL-340_100b 2420 chr3L 21847404 21847449 chr3L 21847525 21847556 17 118 14.0 4.0 9.0 1.7 152 chr3L 21847404 intron mub + chr3L 21847480 intron mub + chr3L 21847556 intron mub + chr3L_17_21845001 chr3L_21845001 RAL-340_100b 2421 chr3L 21872410 21872418 chr3L 21872508 21872522 5 103 6.5 6.0 6.2 0.7 112 chr3L 21872410 intron mub + chr3L 21872466 intron mub + chr3L 21872522 intron mub + chr3L_5_21870001 chr3L_21870001 RAL-340_100b 2422 chr3L 21886365 21886419 chr3L 21886473 21886527 22 108 8.5 14.0 11.2 1.8 162 chr3L 21886365 intron,intron mub +,CR43878 - chr3L 21886446 intron,intron mub +,CR43878 - chr3L 21886527 intron,intron mub +,CR43878 - chr3L_22_21885001 chr3L_21885001 RAL-340_100b 2423 chr3L 22099677 22099703 chr3L 22105859 22105914 3S18 11 6198 7.5 6.0 6.8 1.4 6237 chr3L 22099677 intergenic not near genes chr3L 22102796 intergenic not near genes chr3L 22105914 intergenic not near genes chr3L_11_22100001 chr3L_22100001 RAL-340_100b 2424 chr3L 22114793 22114853 chr3L 22114905 22114907 32 101 4.0 3.5 3.8 6.7 114 chr3L 22114793 intergenic not near genes chr3L 22114850 intergenic not near genes chr3L 22114907 intergenic not near genes chr3L_32_22110001 chr3L_22110001 RAL-340_100b 2425 chr3L 22130474 22130521 chr3L 22130645 22130691 24 169 8.5 8.5 8.5 2.5 217 chr3L 22130474 intergenic not near genes chr3L 22130582 intergenic not near genes chr3L 22130691 intergenic not near genes chr3L_24_22130001 chr3L_22130001 RAL-340_100b 2426 chr3L 22170006 22170056 chr3L 22170150 22170161 13 138 12.0 6.5 9.2 1.3 155 chr3L 22170006 intron olf413 + chr3L 22170084 intron olf413 + chr3L 22170161 intron olf413 + chr3L_13_22170001 chr3L_22170001 RAL-340_100b 2427 chr3L 22361924 22361960 chr3L 22362021 22362061 16 100 15.5 9.0 12.2 1.2 137 chr3L 22361924 intron Ten-m - chr3L 22361992 intron Ten-m - chr3L 22362061 intron Ten-m - chr3L_16_22360001 chr3L_22360001 RAL-340_100b 2428 chr3L 22395573 22395598 chr3L 22395681 22395706 9 106 17.0 10.5 13.8 0.6 133 chr3L 22395573 intron Ten-m - chr3L 22395640 intron Ten-m - chr3L 22395706 intron Ten-m - chr3L_9_22395001 chr3L_22395001 RAL-340_100b 2429 chr3L 22395617 22395631 chr3L 22395690 22395739 6 100 9.5 12.5 11.0 0.5 122 chr3L 22395617 intron Ten-m - chr3L 22395678 intron Ten-m - chr3L 22395739 intron Ten-m - chr3L_6_22395001 chr3L_22395001 RAL-340_100b 2430 chr3L 22411361 22411393 chr3L 22411448 22411495 15 94 5.5 4.0 4.8 2.6 134 chr3L 22411361 intergenic not near genes chr3L 22411428 intergenic not near genes chr3L 22411495 intergenic not near genes chr3L_15_22410001 chr3L_22410001 RAL-340_100b 2431 chr3L 22507124 22507155 chr3L 22507208 22507235 18 100 8.5 7.0 7.8 2.0 111 chr3L 22507124 intergenic not near genes chr3L 22507180 intergenic not near genes chr3L 22507235 intergenic not near genes chr3L_18_22505001 chr3L_22505001 RAL-340_100b 2432 chr3L 22522674 22522727 chr3L 22522776 22522829 17 99 13.5 5.5 9.5 1.6 155 chr3L 22522674 intergenic not near genes chr3L 22522752 intergenic not near genes chr3L 22522829 intergenic not near genes chr3L_17_22520001 chr3L_22520001 RAL-340_100b 2433 chr3L 22542874 22542914 chr3L 22543010 22543060 16 138 6.0 11.5 8.8 1.6 186 chr3L 22542874 intergenic not near genes chr3L 22542967 intergenic not near genes chr3L 22543060 intergenic not near genes chr3L_16_22540001 chr3L_22540001 RAL-340_100b 2434 chr3L 22544368 22544421 chr3L 22544470 22544517 27 100 5.0 9.5 7.2 3.3 149 chr3L 22544368 intergenic not near genes chr3L 22544442 intergenic not near genes chr3L 22544517 intergenic not near genes chr3L_27_22540001 chr3L_22540001 RAL-340_100b 2435 chr3L 22554400 22554449 chr3L 22554501 22554549 17 100 10.5 6.5 8.5 1.8 149 chr3L 22554400 intergenic not near genes chr3L 22554474 intergenic not near genes chr3L 22554549 intergenic not near genes chr3L_17_22550001 chr3L_22550001 RAL-340_100b 2436 chr3L 22555745 22555802 chr3L 22563240 22563277 blood 31 7489 7.0 7.0 7.0 3.9 7532 chr3L 22555745 intergenic not near genes chr3L 22559511 intergenic not near genes chr3L 22563277 intergenic not near genes chr3L_31_22555001 chr3L_22555001 RAL-340_100b 2437 chr3L 22569553 22569562 chr3L 22569676 22569685 4 123 20.5 11.5 16.0 0.2 132 chr3L 22569553 intergenic not near genes chr3L 22569619 intergenic not near genes chr3L 22569685 intergenic not near genes chr3L_4_22565001 chr3L_22565001 RAL-340_100b 2438 chr3L 22569566 22569603 chr3L 22569674 22569726 24 116 12.5 11.0 11.8 1.9 160 chr3L 22569566 intergenic not near genes chr3L 22569646 intergenic not near genes chr3L 22569726 intergenic not near genes chr3L_24_22565001 chr3L_22565001 RAL-340_100b 2439 chr3L 22577608 22577647 chr3L 22582409 22582437 Doc 27 4805 3.5 9.5 6.5 3.6 4829 chr3L 22577608 intergenic not near genes chr3L 22580022 intergenic not near genes chr3L 22582437 3` UTR CG14459 - chr3L_27_22580001 chr3L_22580001 RAL-340_100b 2440 chr3L 22617169 22617222 chr3L 22624646 22624698 blood 23 7472 5.0 6.0 5.5 3.5 7529 chr3L 22617169 intron CG14459 - chr3L 22620934 intron CG14459 - chr3L 22624698 intron CG14459 - chr3L_23_22620001 chr3L_22620001 RAL-340_100b 2441 chr3L 22631899 22631957 chr3L 22897031 22897089 Ivk 39 265125 54.0 13.0 33.5 1.1 265190 chr3L 22631899 intron CG14459 - chr3L 22764494 intron SPoCk + chr3L 22897089 intergenic CR44688 + chr3L_39_22760001 chr3L_22760001 RAL-340_100b 2442 chr3L 22631383 22631394 chr3L 22633784 22633796 9 2402 51.0 48.0 49.5 0.2 2413 chr3L 22631383 intron CG14459 - chr3L 22632590 intron CG14459 - chr3L 22633796 intron CG14459 - chr3L_9_22630001 chr3L_22630001 RAL-340_100b 2443 chr3L 22631381 22631408 chr3L 22633802 22633839 26 2413 55.0 44.0 49.5 0.5 2458 chr3L 22631381 intron CG14459 - chr3L 22632610 intron CG14459 - chr3L 22633839 intron CG14459 - chr3L_26_22630001 chr3L_22630001 RAL-340_100b 2444 chr3L 22732440 22732495 chr3L 22732546 22732601 19 100 9.5 6.0 7.8 2.2 161 chr3L 22732440 intron CG11367 + chr3L 22732520 intron CG11367 + chr3L 22732601 exon CG11367 + chr3L_19_22730001 chr3L_22730001 RAL-340_100b 2445 chr3L 22756396 22756429 chr3L 22756476 22756531 20 94 8.0 7.0 7.5 2.4 135 chr3L 22756396 intron SPoCk + chr3L 22756464 intron SPoCk + chr3L 22756531 intron SPoCk + chr3L_20_22755001 chr3L_22755001 RAL-340_100b 2446 chr3L 22761394 22761417 chr3L 22766853 22766875 Ivk 4 5458 9.5 6.5 8.0 0.4 5481 chr3L 22761394 intron SPoCk + chr3L 22764134 intron SPoCk + chr3L 22766875 intron SPoCk + chr3L_4_22760001 chr3L_22760001 RAL-340_100b 2447 chr3L 22771608 22771665 chr3L 22771715 22771740 22 89 5.0 4.0 4.5 4.0 132 chr3L 22771608 intron SPoCk + chr3L 22771674 intron SPoCk + chr3L 22771740 intron SPoCk + chr3L_22_22770001 chr3L_22770001 RAL-340_100b 2448 chr3L 22838583 22838621 chr3L 22838665 22838677 29 93 19.0 15.5 17.2 1.6 94 chr3L 22838583 intergenic CG11226 + chr3L 22838630 intergenic CG11226 + chr3L 22838677 intergenic not near genes chr3L_29_22835001 chr3L_22835001 RAL-340_100b 2449 chr3L 22853669 22853721 chr3L 22853780 22853832 14 110 8.0 6.0 7.0 1.8 163 chr3L 22853669 5` UTR CR43426 + chr3L 22853750 5` UTR CR43426 + chr3L 22853832 5` UTR CR43426 + chr3L_14_22850001 chr3L_22850001 RAL-340_100b 2450 chr3L 22865986 22866007 chr3L 22867119 22867165 Doc 12 1153 6.0 8.0 7.0 1.5 1179 chr3L 22865986 intron CG33170 + chr3L 22866576 intron CG33170 + chr3L 22867165 intron CG33170 + chr3L_12_22865001 chr3L_22865001 RAL-340_100b 2451 chr3L 22894235 22894252 chr3L 22894354 22894371 16 117 62.5 71.0 66.8 0.2 136 chr3L 22894235 intergenic slif + chr3L 22894303 intergenic slif + chr3L 22894371 intergenic not near genes chr3L_16_22890001 chr3L_22890001 RAL-340_100b 2452 chr3L 22894254 22894256 chr3L 22894349 22894375 4 111 58.5 67.0 62.8 0.1 121 chr3L 22894254 intergenic slif + chr3L 22894314 intergenic slif + chr3L 22894375 intergenic not near genes chr3L_4_22890001 chr3L_22890001 RAL-340_100b 2453 chr3L 22632817 22632840 chr3L 22896938 22896954 Ivk 10 264116 74.5 48.5 61.5 0.2 264137 chr3L 22632817 intron CG14459 - chr3L 22764886 intron SPoCk + chr3L 22896954 intergenic CR44688 + chr3L_10_22760001 chr3L_22760001 RAL-340_100b 2454 chr3L 22632838 22632847 chr3L 22896963 22896967 Ivk 9 264117 74.5 36.5 55.5 0.2 264129 chr3L 22632838 intron CG14459 - chr3L 22764902 intron SPoCk + chr3L 22896967 intergenic CR44688 + chr3L_9_22760001 chr3L_22760001 RAL-340_100b 2455 chr3L 22632825 22632856 chr3L 22896970 22896970 Ivk 4 264124 77.0 32.0 54.5 0.1 264145 chr3L 22632825 intron CG14459 - chr3L 22764898 intron SPoCk + chr3L 22896970 intergenic CR44688 + chr3L_4_22760001 chr3L_22760001 RAL-340_100b 2456 chr3L 22632818 22632842 chr3L 22896972 22896988 Ivk 15 264128 74.5 30.5 52.5 0.3 264170 chr3L 22632818 intron CG14459 - chr3L 22764903 intron SPoCk + chr3L 22896988 intergenic CR44688 + chr3L_15_22760001 chr3L_22760001 RAL-340_100b 2457 chr3L 1463476 1463479 chr3L 22908066 22908066 4 21444588 10.5 65.5 38.0 0.1 21444590 chr3L 1463476 intron Ptp61F - chr3L 12185771 intron CG6910 + chr3L 22908066 intergenic not near genes chr3L_4_12185001 chr3L_12185001 RAL-340_100b 2458 chr3L 9013690 9013693 chr3L 22908066 22908066 4 13894374 27.5 65.5 46.5 0.1 13894376 chr3L 9013690 intron Doc2 - chr3L 15960878 3` UTR l(3)72Ab - chr3L 22908066 intergenic not near genes chr3L_4_15960001 chr3L_15960001 RAL-340_100b 2459 chr3L 9102746 9102804 chr3L 22908066 22908066 27 13805293 100.0 65.5 82.8 0.3 13805320 chr3L 9102746 exon bol - chr3L 16005406 exon mRpS31 + chr3L 22908066 intergenic not near genes chr3L_27_16005001 chr3L_16005001 RAL-340_100b 2460 chr3L 9307795 9307797 chr3L 22908066 22908066 82 13600270 24.0 65.5 44.8 1.8 13600271 chr3L 9307795 intergenic not near genes chr3L 16107930 intron Zn72D - chr3L 22908066 intergenic not near genes chr3L_82_16105001 chr3L_16105001 RAL-340_100b 2461 chr3L 9377503 9377517 chr3L 22908066 22908066 4 13530557 70.0 65.5 67.8 0.1 13530563 chr3L 9377503 intergenic Hsp26 -,Hsp67Ba - chr3L 16142784 intron,exon CG5151 -,CG32152 - chr3L 22908066 intergenic not near genes chr3L_4_16140001 chr3L_16140001 RAL-340_100b 2462 chr3L 10168316 10168317 chr3L 22908066 22908066 7 12739749 44.0 65.5 54.8 0.1 12739750 chr3L 10168316 intron dpr10 - chr3L 16538191 intron CG43373 - chr3L 22908066 intergenic not near genes chr3L_7_16535001 chr3L_16535001 RAL-340_100b 2463 chr3L 18417066 18417066 chr3L 22908066 22908066 7 4491000 41.0 65.5 53.2 0.1 4491000 chr3L 18417066 intergenic not near genes chr3L 20662566 intergenic not near genes chr3L 22908066 intergenic not near genes chr3L_7_20660001 chr3L_20660001 RAL-340_100b 2464 chr3L 19220633 19220692 chr3L 22908066 22908066 50 3687430 43.5 65.5 54.5 0.9 3687433 chr3L 19220633 intron fz2 - chr3L 21064350 intron siz + chr3L 22908066 intergenic not near genes chr3L_50_21060001 chr3L_21060001 RAL-340_100b 2465 chr3L 20525228 20525230 chr3L 22908066 22908066 8 2382837 23.5 65.5 44.5 0.2 2382838 chr3L 20525228 intron CG4825 - chr3L 21716647 intergenic not near genes chr3L 22908066 intergenic not near genes chr3L_8_21715001 chr3L_21715001 RAL-340_100b 2466 chr3L 22908066 22908066 chr3L 24821490 24821495 132 1913428 62.0 47.0 54.5 2.4 1913429 chr3L 22908066 intergenic not near genes chr3L 23864780 intron CG40470 - chr3L 24821495 intergenic not near genes chr3L_132_23860001 chr3L_23860001 RAL-340_100b 2467 chr3L 7877367 7877402 chr3L 22908067 22908067 4 15030686 88.5 66.0 77.2 0.1 15030700 chr3L 7877367 intron CG32365 + chr3L 15392717 intergenic not near genes chr3L 22908067 intergenic not near genes chr3L_4_15390001 chr3L_15390001 RAL-340_100b 2468 chr3L 8035221 8035268 chr3L 22908067 22908067 4 14872824 101.0 66.0 83.5 0.0 14872846 chr3L 8035221 intron nmo + chr3L 15471644 intergenic not near genes chr3L 22908067 intergenic not near genes chr3L_4_15470001 chr3L_15470001 RAL-340_100b 2469 chr3L 9102745 9102805 chr3L 22908067 22908067 16 13805296 100.0 66.0 83.0 0.2 13805322 chr3L 9102745 exon bol - chr3L 16005406 exon mRpS31 + chr3L 22908067 intergenic not near genes chr3L_16_16005001 chr3L_16005001 RAL-340_100b 2470 chr3L 9307795 9307797 chr3L 22908067 22908067 38 13600271 24.0 66.0 45.0 0.8 13600272 chr3L 9307795 intergenic not near genes chr3L 16107931 intron Zn72D - chr3L 22908067 intergenic not near genes chr3L_38_16105001 chr3L_16105001 RAL-340_100b 2471 chr3L 18417066 18417066 chr3L 22908067 22908067 8 4491001 41.0 66.0 53.5 0.1 4491001 chr3L 18417066 intergenic not near genes chr3L 20662566 intergenic not near genes chr3L 22908067 intergenic not near genes chr3L_8_20660001 chr3L_20660001 RAL-340_100b 2472 chr3L 19220633 19220660 chr3L 22908067 22908067 34 3687432 42.5 66.0 54.2 0.6 3687434 chr3L 19220633 intron fz2 - chr3L 21064350 intron siz + chr3L 22908067 intergenic not near genes chr3L_34_21060001 chr3L_21060001 RAL-340_100b 2473 chr3L 20525228 20525230 chr3L 22908067 22908067 10 2382837 23.5 66.0 44.8 0.2 2382839 chr3L 20525228 intron CG4825 - chr3L 21716648 intergenic not near genes chr3L 22908067 intergenic not near genes chr3L_10_21715001 chr3L_21715001 RAL-340_100b 2474 chr3L 22908067 22908067 chr3L 24821491 24821496 80 1913427 62.0 47.0 54.5 1.4 1913429 chr3L 22908067 intergenic not near genes chr3L 23864782 intron CG40470 - chr3L 24821496 intergenic not near genes chr3L_80_23860001 chr3L_23860001 RAL-340_100b 2475 chr3L 22909015 22909034 chr3L 22909111 22909113 6 106 20.0 10.5 15.2 0.4 98 chr3L 22909015 intergenic CR45661 + chr3L 22909064 intergenic CR45661 + chr3L 22909113 intergenic CR45661 + chr3L_6_22905001 chr3L_22905001 RAL-340_100b 2476 chr3L 22909035 22909054 chr3L 22909109 22909160 16 102 11.0 10.5 10.8 1.4 125 chr3L 22909035 intergenic CR45661 + chr3L 22909098 intergenic CR45661 + chr3L 22909160 intergenic CR45661 + chr3L_16_22905001 chr3L_22905001 RAL-340_100b 2477 chr3L 22974342 22974394 chr3L 22974446 22974493 26 100 15.0 11.0 13.0 1.9 151 chr3L 22974342 intergenic not near genes chr3L 22974418 intergenic not near genes chr3L 22974493 intergenic not near genes chr3L_26_22970001 chr3L_22970001 RAL-340_100b 2478 chr3L 22989839 22989894 chr3L 22996838 22996893 297 14 6994 8.5 2.5 5.5 2.2 7054 chr3L 22989839 intergenic not near genes chr3L 22993366 intergenic not near genes chr3L 22996893 intergenic not near genes chr3L_14_22990001 chr3L_22990001 RAL-340_100b 2479 chr3L 22997055 22997100 chr3L 22997165 22997210 13 106 2.0 7.5 4.8 2.2 155 chr3L 22997055 intergenic not near genes chr3L 22997132 intergenic not near genes chr3L 22997210 intergenic not near genes chr3L_13_22995001 chr3L_22995001 RAL-340_100b 2480 chr3L 23101261 23101318 chr3L 23101497 23101554 15 233 5.0 3.5 4.2 2.9 293 chr3L 23101261 intron CkIIalpha + chr3L 23101408 intron CkIIalpha + chr3L 23101554 intron CkIIalpha + chr3L_15_23100001 chr3L_23100001 RAL-340_100b 2481 chr3L 23205596 23205653 chr3L 23205704 23205723 12 89 5.5 10.0 7.8 1.4 127 chr3L 23205596 intergenic not near genes chr3L 23205660 intergenic not near genes chr3L 23205723 intergenic not near genes chr3L_12_23205001 chr3L_23205001 RAL-340_100b 2482 chr3L 23215171 23215207 chr3L 23215280 23215336 14 120 8.0 5.0 6.5 1.9 165 chr3L 23215171 intron nAChRalpha4 + chr3L 23215254 intron nAChRalpha4 + chr3L 23215336 intron nAChRalpha4 + chr3L_14_23215001 chr3L_23215001 RAL-340_100b 2483 chr3L 23255291 23255336 chr3L 23255391 23255432 16 95 3.5 3.0 3.2 3.8 141 chr3L 23255291 intron nAChRalpha4 + chr3L 23255362 intron nAChRalpha4 + chr3L 23255432 intron nAChRalpha4 + chr3L_16_23255001 chr3L_23255001 RAL-340_100b 2484 chr3L 23288942 23288999 chr3L 23289051 23289094 42 103 52.0 59.0 55.5 0.7 152 chr3L 23288942 intergenic not near genes chr3L 23289018 intergenic not near genes chr3L 23289094 intergenic not near genes chr3L_42_23285001 chr3L_23285001 RAL-340_100b 2485 chr3L 23290463 23290470 chr3L 23295321 23295328 X-element 4 4858 40.0 25.0 32.5 0.1 4865 chr3L 23290463 intergenic not near genes chr3L 23292896 intergenic not near genes chr3L 23295328 intergenic not near genes chr3L_4_23290001 chr3L_23290001 RAL-340_100b 2486 chr3L 23290474 23290510 chr3L 23295332 23295368 X-element 28 4857 15.5 31.0 23.2 1.2 4894 chr3L 23290474 intergenic not near genes chr3L 23292921 intergenic not near genes chr3L 23295368 intergenic not near genes chr3L_28_23290001 chr3L_23290001 RAL-340_100b 2487 chr3L 23323481 23323503 chr3L 23324922 23324967 7 1460 8.0 10.0 9.0 0.7 1486 chr3L 23323481 intron alpha-Cat - chr3L 23324224 intron alpha-Cat - chr3L 23324967 intron alpha-Cat - chr3L_7_23320001 chr3L_23320001 RAL-340_100b 2488 chr3L 23325224 23325278 chr3L 23325369 23325421 24 137 16.0 9.0 12.5 1.8 197 chr3L 23325224 intron alpha-Cat - chr3L 23325322 intron alpha-Cat - chr3L 23325421 intron alpha-Cat - chr3L_24_23325001 chr3L_23325001 RAL-340_100b 2489 chr3L 23341701 23341724 chr3L 23342494 23342517 10 792 9.5 12.0 10.8 0.8 816 chr3L 23341701 intron CG32230 + chr3L 23342109 intron CG32230 + chr3L 23342517 intron CG32230 + chr3L_10_23340001 chr3L_23340001 RAL-340_100b 2490 chr3L 23824000 23824020 chr3L 23824438 23824458 11 437 24.5 14.5 19.5 0.5 458 chr3L 23824000 intergenic not near genes chr3L 23824229 intergenic not near genes chr3L 23824458 intergenic not near genes chr3L_11_23820001 chr3L_23820001 RAL-340_100b 2491 chr3L 23824021 23824037 chr3L 23824437 23824475 14 434 15.5 13.5 14.5 0.9 454 chr3L 23824021 intergenic not near genes chr3L 23824248 intergenic not near genes chr3L 23824475 intergenic not near genes chr3L_14_23820001 chr3L_23820001 RAL-340_100b 2492 chr3L 23875500 23875556 chr3L 23875606 23875636 18 100 8.5 4.0 6.2 2.5 136 chr3L 23875500 intron CG40470 - chr3L 23875568 intron CG40470 - chr3L 23875636 intron CG40470 - chr3L_18_23875001 chr3L_23875001 RAL-340_100b 2493 chr3L 24012392 24012433 chr3L 24020758 24020799 roo 7 8361 3.5 7.0 5.2 1.1 8407 chr3L 24012392 intergenic not near genes chr3L 24016596 intergenic not near genes chr3L 24020799 intergenic not near genes chr3L_7_24015001 chr3L_24015001 RAL-340_100b 2494 chr3L 24075322 24075372 chr3L 24075461 24075465 6 131 6.0 10.5 8.2 0.7 143 chr3L 24075322 intron Snap25 + chr3L 24075394 intron Snap25 + chr3L 24075465 intron Snap25 + chr3L_6_24075001 chr3L_24075001 RAL-340_100b 2495 chr3L 24168770 24168810 chr3L 24176115 24176153 ZAM 13 7345 7.0 3.5 5.2 2.1 7383 chr3L 24168770 intron Snap25 + chr3L 24172462 intron Snap25 + chr3L 24176153 intron Snap25 + chr3L_13_24170001 chr3L_24170001 RAL-340_100b 2496 chr3L 24726269 24726271 chr3L 24726381 24726381 4 112 20.0 8.0 14.0 0.3 112 chr3L 24726269 exon scro + chr3L 24726325 intron scro + chr3L 24726381 intron scro + chr3L_4_24725001 chr3L_24725001 RAL-340_100b 2497 chr3L 24726281 24726297 chr3L 24726368 24726409 4 106 13.5 5.5 9.5 0.4 128 chr3L 24726281 exon scro + chr3L 24726345 intron scro + chr3L 24726409 intron scro + chr3L_4_24725001 chr3L_24725001 RAL-340_100b 2498 chr3L 24726299 24726309 chr3L 24726366 24726421 5 103 11.0 5.5 8.2 0.5 122 chr3L 24726299 intron scro + chr3L 24726360 intron scro + chr3L 24726421 intron scro + chr3L_5_24725001 chr3L_24725001 RAL-340_100b 2499 chr3L 24791874 24791916 chr3L 24796678 24796711 Doc 14 4802 3.0 7.0 5.0 2.3 4837 chr3L 24791874 intergenic not near genes chr3L 24794292 intergenic not near genes chr3L 24796711 intergenic not near genes chr3L_14_24790001 chr3L_24790001 RAL-340_100b 2500 chr3L 24811048 24811051 chr3L 24821492 24821494 mdg1 13 10443 24.0 47.5 35.8 0.4 10446 chr3L 24811048 intergenic not near genes chr3L 24816271 intergenic not near genes chr3L 24821494 intergenic not near genes chr3L_13_24815001 chr3L_24815001 RAL-340_100b 2501 chr3L 18198929 18198931 chr3L 24821492 24821492 26 6622562 0.0 47.5 23.8 1.0 6622563 chr3L 18198929 intergenic not near genes chr3L 21510210 intron M6 + chr3L 24821492 intergenic not near genes chr3L_26_21510001 chr3L_21510001 RAL-340_100b 2502 chr3L 20525228 20525230 chr3L 24821492 24821492 24 4296263 23.5 47.5 35.5 0.7 4296264 chr3L 20525228 intron CG4825 - chr3L 22673360 intron CG14457 + chr3L 24821492 intergenic not near genes chr3L_24_22670001 chr3L_22670001 RAL-340_100b 2503 chr3L 18198929 18198931 chr3L 24821493 24821493 34 6622562 0.0 48.0 24.0 1.4 6622564 chr3L 18198929 intergenic not near genes chr3L 21510211 intron M6 + chr3L 24821493 intergenic not near genes chr3L_34_21510001 chr3L_21510001 RAL-340_100b 2504 chr3L 20525228 20525230 chr3L 24821493 24821493 23 4296264 23.5 48.0 35.8 0.6 4296265 chr3L 20525228 intron CG4825 - chr3L 22673360 intron CG14457 + chr3L 24821493 intergenic not near genes chr3L_23_22670001 chr3L_22670001 RAL-340_100b 2505 chr3L 24811048 24811050 chr3L 24821493 24821493 mdg1 7 10443 24.0 48.0 36.0 0.2 10445 chr3L 24811048 intergenic not near genes chr3L 24816270 intergenic not near genes chr3L 24821493 intergenic not near genes chr3L_7_24815001 chr3L_24815001 RAL-340_100b 2506 chr3L 18198929 18198933 chr3L 24821494 24821494 18 6622563 0.0 48.5 24.2 0.7 6622565 chr3L 18198929 intergenic not near genes chr3L 21510212 intron M6 + chr3L 24821494 intergenic not near genes chr3L_18_21510001 chr3L_21510001 RAL-340_100b 2507 chr3L 20525227 20525230 chr3L 24821494 24821494 21 4296265 23.5 48.5 36.0 0.6 4296267 chr3L 20525227 intron CG4825 - chr3L 22673360 intron CG14457 + chr3L 24821494 intergenic not near genes chr3L_21_22670001 chr3L_22670001 RAL-340_100b 2508 chr3L 22908066 22908066 chr3L 24821494 24821494 8 1913428 62.0 48.5 55.2 0.1 1913428 chr3L 22908066 intergenic not near genes chr3L 23864780 intron CG40470 - chr3L 24821494 intergenic not near genes chr3L_8_23860001 chr3L_23860001 RAL-340_100b 2509 chr3L 25331626 25331649 chr3L 25331735 25331735 4 107 8.0 2.5 5.2 0.6 109 chr3L 25331626 intergenic not near genes chr3L 25331680 intergenic not near genes chr3L 25331735 intergenic not near genes chr3L_4_25330001 chr3L_25330001 RAL-340_100b 2510 chr3L 21448026 21448027 chr3L 25486593 25486594 Cr1a 4 4038567 42.5 16.0 29.2 0.1 4038568 chr3L 21448026 3` UTR Syx7 + chr3L 23467310 intergenic not near genes chr3L 25486594 intron CG41343 - chr3L_4_23465001 chr3L_23465001 RAL-340_100b 2511 chr3L 26026696 26026745 chr3L 26026811 26026860 5 112 31.5 38.0 34.8 0.1 164 chr3L 26026696 intergenic not near genes chr3L 26026778 intergenic not near genes chr3L 26026860 intergenic not near genes chr3L_5_26025001 chr3L_26025001 RAL-340_100b 2512 chr3L 26417906 26417919 chr3L 26640351 26640383 Idefix 20 222439 0.0 3.5 1.8 7.1 222477 chr3L 26417906 intergenic not near genes chr3L 26529144 intergenic not near genes chr3L 26640383 intergenic not near genes chr3L_20_26525001 chr3L_26525001 RAL-340_100b 2513 chr3L 23941244 23941244 chr3L 26882298 26882298 1360 9 2941054 39.0 9.5 24.2 0.4 2941054 chr3L 23941244 intron CG40470 - chr3L 25411771 intergenic not near genes chr3L 26882298 intergenic not near genes chr3L_9_25410001 chr3L_25410001 RAL-340_100b 2514 chr3L 23941235 23941245 chr3L 26882299 26882299 1360 12 2941055 39.0 8.5 23.8 0.5 2941064 chr3L 23941235 intron CG40470 - chr3L 25411767 intergenic not near genes chr3L 26882299 intergenic not near genes chr3L_12_25410001 chr3L_25410001 RAL-340_100b 2515 chr3L 23941244 23941246 chr3L 26882300 26882300 1360 11 2941054 40.0 7.5 23.8 0.4 2941056 chr3L 23941244 intron CG40470 - chr3L 25411772 intergenic not near genes chr3L 26882300 intergenic not near genes chr3L_11_25410001 chr3L_25410001 RAL-340_100b 2516 chr3L 27390690 27390711 chr3L 27390767 27390782 8 94 41.0 44.5 42.8 0.2 92 chr3L 27390690 intron Dbp80 + chr3L 27390736 intron Dbp80 + chr3L 27390782 intron Dbp80 + chr3L_8_27390001 chr3L_27390001 RAL-340_100b 2517 chr3R 97114 97116 chr3R 99845 99847 4 2732 0.5 30.0 15.2 0.2 2733 chr3R 97114 intergenic not near genes chr3R 98480 intergenic not near genes chr3R 99847 intergenic not near genes chr3R_4_95001 chr3R_95001 RAL-340_100b 2518 chr3R 2424356 2424359 chr3R 32062433 32062447 5 29638102 13.5 37.0 25.2 0.2 29638091 chr3R 2424356 intergenic not near genes chr3R 17243402 intron beat-IIb - chr3R 32062447 intron Map205 - chr3R_5_17240001 chr3R_17240001 RAL-340_100b 2519 chr3R 2534123 2534152 chr3R 2541704 2541746 7 7588 27.5 27.0 27.2 0.2 7623 chr3R 2534123 intergenic not near genes chr3R 2537934 intergenic not near genes chr3R 2541746 intergenic not near genes chr3R_7_2535001 chr3R_2535001 RAL-340_100b 2520 chr3R 2534153 2534161 chr3R 2541701 2541747 5 7576 25.0 27.5 26.2 0.2 7594 chr3R 2534153 intergenic not near genes chr3R 2537950 intergenic not near genes chr3R 2541747 intergenic not near genes chr3R_5_2535001 chr3R_2535001 RAL-340_100b 2521 chr3R 2556882 2556932 chr3R 2557590 2557640 16 709 29.5 27.0 28.2 0.5 758 chr3R 2556882 intron CG41056 - chr3R 2557261 intron CG41056 - chr3R 2557640 intron CG41056 - chr3R_16_2555001 chr3R_2555001 RAL-340_100b 2522 chr3R 4063786 4063837 chr3R 4069091 4069100 13 5296 20.5 27.5 24.0 0.5 5314 chr3R 4063786 intergenic not near genes chr3R 4066443 intergenic not near genes chr3R 4069100 intergenic not near genes chr3R_13_4065001 chr3R_4065001 RAL-340_100b 2523 chr3R 4105032 4105064 chr3R 4110240 4110293 copia 6 5225 5.5 4.5 5.0 1.0 5261 chr3R 4105032 intergenic not near genes chr3R 4107662 intergenic not near genes chr3R 4110293 intergenic not near genes chr3R_6_4105001 chr3R_4105001 RAL-340_100b 2524 chr3R 4132881 4132928 chr3R 4133060 4133107 8 179 4.0 4.0 4.0 1.6 226 chr3R 4132881 5` UTR Gfat1 + chr3R 4132994 intron Gfat1 + chr3R 4133107 intron Gfat1 + chr3R_8_4130001 chr3R_4130001 RAL-340_100b 2525 chr3R 4206049 4206101 chr3R 4211649 4211701 mdg3 24 5597 8.0 6.0 7.0 3.0 5652 chr3R 4206049 intron CG14636 - chr3R 4208875 intron CG14636 - chr3R 4211701 intron CG14636 - chr3R_24_4205001 chr3R_4205001 RAL-340_100b 2526 chr3R 4366736 4366786 chr3R 4375144 4375194 roo 15 8408 6.5 7.0 6.8 1.9 8458 chr3R 4366736 3` UTR CG1090 + chr3R 4370965 intergenic not near genes chr3R 4375194 5` UTR CR44922 + chr3R_15_4370001 chr3R_4370001 RAL-340_100b 2527 chr3R 4408388 4408436 chr3R 4412717 4412765 Juan 15 4326 17.5 9.0 13.2 1.1 4377 chr3R 4408388 intron CG32944 - chr3R 4410576 intron CG32944 - chr3R 4412765 intron CG32944 - chr3R_15_4410001 chr3R_4410001 RAL-340_100b 2528 chr3R 4463371 4463421 chr3R 4463472 4463522 67 97 24.0 18.5 21.2 3.0 151 chr3R 4463371 intergenic CG31522 - chr3R 4463446 intergenic not near genes chr3R 4463522 intergenic not near genes chr3R_67_4460001 chr3R_4460001 RAL-340_100b 2529 chr3R 4542033 4542043 chr3R 21907534 21907536 6 17365498 176.5 58.5 117.5 0.1 17365503 chr3R 4542033 intron,exon CG34357 -,Mur82C + chr3R 13224784 intron Ace - chr3R 21907536 intergenic CG6678 + chr3R_6_13220001 chr3R_13220001 RAL-340_100b 2530 chr3R 4542050 4542063 chr3R 21907535 21907536 6 17365480 199.5 59.0 129.2 0.0 17365486 chr3R 4542050 intron,exon CG34357 -,Mur82C + chr3R 13224793 intron Ace - chr3R 21907536 intergenic CG6678 + chr3R_6_13220001 chr3R_13220001 RAL-340_100b 2531 chr3R 4588716 4588768 chr3R 4588825 4588832 23 103 5.0 12.0 8.5 2.4 116 chr3R 4588716 intron CR45558 - chr3R 4588774 intron CR45558 - chr3R 4588832 intron CR45558 - chr3R_23_4585001 chr3R_4585001 RAL-340_100b 2532 chr3R 4599281 4599332 chr3R 4599389 4599441 5 109 3.5 14.5 9.0 0.5 160 chr3R 4599281 intron CR44317 - chr3R 4599361 intron CR44317 - chr3R 4599441 intron CR44317 - chr3R_5_4595001 chr3R_4595001 RAL-340_100b 2533 chr3R 4680027 4680040 chr3R 4680157 4680196 5 151 5.5 18.0 11.8 0.4 169 chr3R 4680027 intron CG43427 + chr3R 4680112 intron CG43427 + chr3R 4680196 intron CG43427 + chr3R_5_4680001 chr3R_4680001 RAL-340_100b 2534 chr3R 4692712 4692758 chr3R 4692926 4692972 15 210 5.0 6.5 5.8 2.2 260 chr3R 4692712 intron CG43427 + chr3R 4692842 intron CG43427 + chr3R 4692972 intron CG43427 + chr3R_15_4690001 chr3R_4690001 RAL-340_100b 2535 chr3R 4753224 4753244 chr3R 4757552 4757569 F-element 4 4327 12.0 9.0 10.5 0.3 4345 chr3R 4753224 intron,intron atms +,CG44098 - chr3R 4755396 intron,intron atms +,CG44098 - chr3R 4757569 intron,exon atms +,CG44098 - chr3R_4_4755001 chr3R_4755001 RAL-340_100b 2536 chr3R 4753253 4753265 chr3R 4757546 4757553 F-element 8 4309 9.5 8.0 8.8 0.8 4300 chr3R 4753253 intron,intron atms +,CG44098 - chr3R 4755403 intron,intron atms +,CG44098 - chr3R 4757553 intron,exon atms +,CG44098 - chr3R_8_4755001 chr3R_4755001 RAL-340_100b 2537 chr3R 4764435 4764492 chr3R 4764693 4764750 25 254 9.0 14.0 11.5 2.0 315 chr3R 4764435 intron,intron atms +,CG44098 - chr3R 4764592 intron,intron atms +,CG44098 - chr3R 4764750 intron,intron atms +,CG44098 - chr3R_25_4760001 chr3R_4760001 RAL-340_100b 2538 chr3R 4769138 4769191 chr3R 4769241 4769294 30 98 4.0 10.0 7.0 3.8 156 chr3R 4769138 intron,intron atms +,CG44098 - chr3R 4769216 intron,intron atms +,CG44098 - chr3R 4769294 intron,intron atms +,CG44098 - chr3R_30_4765001 chr3R_4765001 RAL-340_100b 2539 chr3R 4802071 4802077 chr3R 21907534 21907535 5 17105461 131.5 58.5 95.0 0.1 17105464 chr3R 4802071 intron ctrip - chr3R 13354803 exon mthl12 + chr3R 21907535 intergenic CG6678 + chr3R_5_13350001 chr3R_13350001 RAL-340_100b 2540 chr3R 4802087 4802103 chr3R 21907534 21907534 5 17105441 105.5 58.5 82.0 0.1 17105447 chr3R 4802087 intron ctrip - chr3R 13354810 exon mthl12 + chr3R 21907534 intergenic CG6678 + chr3R_5_13350001 chr3R_13350001 RAL-340_100b 2541 chr3R 4861540 4861598 chr3R 4861646 4861704 24 100 8.0 8.5 8.2 2.6 164 chr3R 4861540 intron opa + chr3R 4861622 intron opa + chr3R 4861704 intron opa + chr3R_24_4860001 chr3R_4860001 RAL-340_100b 2542 chr3R 4887453 4887468 chr3R 4894855 4894870 rover 7 7402 17.5 8.5 13.0 0.5 7417 chr3R 4887453 intergenic not near genes chr3R 4891162 intergenic not near genes chr3R 4894870 intergenic not near genes chr3R_7_4890001 chr3R_4890001 RAL-340_100b 2543 chr3R 4887489 4887491 chr3R 4894854 4894893 rover 4 7382 12.5 8.5 10.5 0.3 7404 chr3R 4887489 intergenic not near genes chr3R 4891191 intergenic not near genes chr3R 4894893 intergenic not near genes chr3R_4_4890001 chr3R_4890001 RAL-340_100b 2544 chr3R 4887492 4887508 chr3R 4894894 4894910 rover 6 7401 8.0 19.5 13.8 0.4 7418 chr3R 4887492 intergenic not near genes chr3R 4891201 intergenic not near genes chr3R 4894910 intergenic not near genes chr3R_6_4890001 chr3R_4890001 RAL-340_100b 2545 chr3R 4922317 4922352 chr3R 4922421 4922430 17 100 13.0 6.5 9.8 1.6 113 chr3R 4922317 intron Cdep + chr3R 4922374 intron Cdep + chr3R 4922430 intron Cdep + chr3R_17_4920001 chr3R_4920001 RAL-340_100b 2546 chr3R 4943589 4943599 chr3R 4943719 4943729 7 130 17.0 3.0 10.0 0.6 140 chr3R 4943589 intron Cdep + chr3R 4943659 intron Cdep + chr3R 4943729 intron Cdep + chr3R_7_4940001 chr3R_4940001 RAL-340_100b 2547 chr3R 4943605 4943619 chr3R 4943734 4943737 4 126 11.0 8.0 9.5 0.4 132 chr3R 4943605 intron Cdep + chr3R 4943671 intron Cdep + chr3R 4943737 intron Cdep + chr3R_4_4940001 chr3R_4940001 RAL-340_100b 2548 chr3R 4943620 4943622 chr3R 4943720 4943754 4 124 9.5 4.0 6.8 0.5 134 chr3R 4943620 intron Cdep + chr3R 4943687 intron Cdep + chr3R 4943754 intron Cdep + chr3R_4_4940001 chr3R_4940001 RAL-340_100b 2549 chr3R 4959391 4959400 chr3R 28919203 28919208 4 23959812 32.0 96.5 64.2 0.1 23959817 chr3R 4959391 intron CG2016 - chr3R 16939300 intron Abd-B - chr3R 28919208 intron Doa + chr3R_4_16935001 chr3R_16935001 RAL-340_100b 2550 chr3R 4965982 4966034 chr3R 4966099 4966151 17 115 7.5 1.0 4.2 3.3 169 chr3R 4965982 intron CG1124 + chr3R 4966066 intron CG1124 + chr3R 4966151 intron CG1124 + chr3R_17_4965001 chr3R_4965001 RAL-340_100b 2551 chr3R 4975912 4975966 chr3R 4976038 4976092 22 123 7.5 3.5 5.5 3.4 180 chr3R 4975912 intergenic not near genes chr3R 4976002 intergenic not near genes chr3R 4976092 intergenic not near genes chr3R_22_4975001 chr3R_4975001 RAL-340_100b 2552 chr3R 5019511 5019546 chr3R 21907535 21907535 6 16888000 50.0 59.0 54.5 0.1 16888024 chr3R 5019511 intron CR45585 + chr3R 13463523 3` UTR,intron CG14372 +,CR17025 - chr3R 21907535 intergenic CG6678 + chr3R_6_13460001 chr3R_13460001 RAL-340_100b 2553 chr3R 5039032 5039055 chr3R 5039155 5039165 12 120 22.5 6.5 14.5 0.8 133 chr3R 5039032 intergenic not near genes chr3R 5039098 intergenic not near genes chr3R 5039165 intergenic not near genes chr3R_12_5035001 chr3R_5035001 RAL-340_100b 2554 chr3R 5045838 5045878 chr3R 5052955 5053005 HMS-Beagle 12 7126 6.0 5.5 5.8 1.8 7167 chr3R 5045838 intron CR43635 - chr3R 5049422 intergenic not near genes chr3R 5053005 intergenic CR45588 - chr3R_12_5045001 chr3R_5045001 RAL-340_100b 2555 chr3R 5067956 5068013 chr3R 5073498 5073524 mdg3 28 5537 6.0 6.0 6.0 4.0 5568 chr3R 5067956 intergenic not near genes chr3R 5070740 intergenic not near genes chr3R 5073524 intergenic not near genes chr3R_28_5070001 chr3R_5070001 RAL-340_100b 2556 chr3R 5077271 5077309 chr3R 5077432 5077465 13 160 8.5 10.5 9.5 1.2 194 chr3R 5077271 intergenic not near genes chr3R 5077368 intergenic corto - chr3R 5077465 intergenic corto - chr3R_13_5075001 chr3R_5075001 RAL-340_100b 2557 chr3R 5081118 5081128 chr3R 5081250 5081260 9 132 19.0 25.0 22.0 0.4 142 chr3R 5081118 3` UTR corto - chr3R 5081189 3` UTR corto - chr3R 5081260 3` UTR corto - chr3R_9_5080001 chr3R_5080001 RAL-340_100b 2558 chr3R 5081130 5081136 chr3R 5081219 5081266 9 125 14.0 13.0 13.5 0.6 136 chr3R 5081130 3` UTR corto - chr3R 5081198 3` UTR corto - chr3R 5081266 3` UTR corto - chr3R_9_5080001 chr3R_5080001 RAL-340_100b 2559 chr3R 5105534 5105580 chr3R 5105630 5105680 12 86 3.5 9.0 6.2 1.7 146 chr3R 5105534 intergenic not near genes chr3R 5105607 intergenic not near genes chr3R 5105680 intergenic not near genes chr3R_12_5105001 chr3R_5105001 RAL-340_100b 2560 chr3R 5158120 5158176 chr3R 5158238 5158294 23 114 5.0 8.5 6.8 2.9 174 chr3R 5158120 intron dpr16 + chr3R 5158207 intron dpr16 + chr3R 5158294 intron dpr16 + chr3R_23_5155001 chr3R_5155001 RAL-340_100b 2561 chr3R 5191366 5191422 chr3R 5191627 5191673 18 271 54.5 55.5 55.0 0.3 307 chr3R 5191366 intron cno - chr3R 5191520 intron cno - chr3R 5191673 intron cno - chr3R_18_5190001 chr3R_5190001 RAL-340_100b 2562 chr3R 5205118 5205136 chr3R 5205235 5205253 17 116 13.0 8.5 10.8 1.4 135 chr3R 5205118 intron cno - chr3R 5205186 intron cno - chr3R 5205253 intron cno - chr3R_17_5205001 chr3R_5205001 RAL-340_100b 2563 chr3R 5297077 5297079 chr3R 29257030 29257032 4 23959953 40.5 35.5 38.0 0.1 23959955 chr3R 5297077 intron mtd - chr3R 17277054 intergenic not near genes chr3R 29257032 intron CG45544 + chr3R_4_17275001 chr3R_17275001 RAL-340_100b 2564 chr3R 5338259 5338266 chr3R 5343607 5343619 Rt1c 4 5352 32.0 11.5 21.8 0.2 5360 chr3R 5338259 intron mtd - chr3R 5340939 intron mtd - chr3R 5343619 intron mtd - chr3R_4_5340001 chr3R_5340001 RAL-340_100b 2565 chr3R 5338269 5338288 chr3R 5343622 5343641 Rt1c 9 5353 26.5 19.0 22.8 0.4 5372 chr3R 5338269 intron mtd - chr3R 5340955 intron mtd - chr3R 5343641 intron mtd - chr3R_9_5340001 chr3R_5340001 RAL-340_100b 2566 chr3R 5338290 5338309 chr3R 5343628 5343662 Rt1c 15 5349 21.0 20.0 20.5 0.7 5372 chr3R 5338290 intron mtd - chr3R 5340976 intron mtd - chr3R 5343662 intron mtd - chr3R_15_5340001 chr3R_5340001 RAL-340_100b 2567 chr3R 5338310 5338314 chr3R 5343623 5343667 Rt1c 6 5339 20.0 19.0 19.5 0.3 5357 chr3R 5338310 intron mtd - chr3R 5340988 intron mtd - chr3R 5343667 intron mtd - chr3R_6_5340001 chr3R_5340001 RAL-340_100b 2568 chr3R 5397289 5397339 chr3R 5397393 5397414 17 99 15.5 13.0 14.2 1.1 125 chr3R 5397289 3` UTR CG1172 + chr3R 5397352 3` UTR CG1172 + chr3R 5397414 3` UTR CG1172 + chr3R_17_5395001 chr3R_5395001 RAL-340_100b 2569 chr3R 5445937 5445990 chr3R 5452422 5452440 Burdock 14 6478 6.5 6.5 6.5 1.9 6503 chr3R 5445937 intron CG14669 + chr3R 5449188 intron CG14669 + chr3R 5452440 intron CG14669 + chr3R_14_5445001 chr3R_5445001 RAL-340_100b 2570 chr3R 5502275 5502288 chr3R 5502610 5502626 5 337 15.0 9.5 12.2 0.4 351 chr3R 5502275 exon CG31547 - chr3R 5502450 5` UTR CG31547 - chr3R 5502626 5` UTR CG31547 - chr3R_5_5500001 chr3R_5500001 RAL-340_100b 2571 chr3R 5502294 5502303 chr3R 5502607 5502642 7 333 6.0 9.0 7.5 0.8 348 chr3R 5502294 exon CG31547 - chr3R 5502468 5` UTR CG31547 - chr3R 5502642 5` UTR CG31547 - chr3R_7_5500001 chr3R_5500001 RAL-340_100b 2572 chr3R 5506816 5506870 chr3R 5506973 5507027 39 153 9.0 4.0 6.5 5.2 211 chr3R 5506816 intergenic not near genes chr3R 5506922 intergenic not near genes chr3R 5507027 intergenic not near genes chr3R_39_5505001 chr3R_5505001 RAL-340_100b 2573 chr3R 5578765 5578793 chr3R 5578867 5578895 9 101 21.0 9.0 15.0 0.6 130 chr3R 5578765 3` UTR CRMP + chr3R 5578830 3` UTR CRMP + chr3R 5578895 3` UTR CRMP + chr3R_9_5575001 chr3R_5575001 RAL-340_100b 2574 chr3R 5578798 5578820 chr3R 5578865 5578912 7 83 15.0 8.5 11.8 0.5 114 chr3R 5578798 3` UTR CRMP + chr3R 5578855 3` UTR CRMP + chr3R 5578912 3` UTR CRMP + chr3R_7_5575001 chr3R_5575001 RAL-340_100b 2575 chr3R 5679286 5679380 chr3R 21907534 21907536 4 16228180 109.5 58.5 84.0 0.0 16228250 chr3R 5679286 3` UTR Atg17 + chr3R 13793411 intergenic not near genes chr3R 21907536 intergenic CG6678 + chr3R_4_13790001 chr3R_13790001 RAL-340_100b 2576 chr3R 5712057 5712109 chr3R 5712170 5712222 66 110 17.0 9.5 13.2 4.6 165 chr3R 5712057 3` UTR plx + chr3R 5712140 3` UTR plx + chr3R 5712222 3` UTR plx + chr3R_66_5710001 chr3R_5710001 RAL-340_100b 2577 chr3R 5712112 5712113 chr3R 5712181 5712226 4 101 15.5 14.0 14.8 0.3 114 chr3R 5712112 3` UTR plx + chr3R 5712169 3` UTR plx + chr3R 5712226 3` UTR plx + chr3R_4_5710001 chr3R_5710001 RAL-340_100b 2578 chr3R 5745991 5745995 chr3R 5746257 5746261 pogo 4 266 25.0 17.0 21.0 0.2 270 chr3R 5745991 3` UTR Madm + chr3R 5746126 3` UTR Madm + chr3R 5746261 3` UTR Madm + chr3R_4_5745001 chr3R_5745001 RAL-340_100b 2579 chr3R 5745997 5746005 chr3R 5746255 5746256 pogo 4 260 21.0 16.0 18.5 0.2 259 chr3R 5745997 3` UTR Madm + chr3R 5746126 3` UTR Madm + chr3R 5746256 3` UTR Madm + chr3R_4_5745001 chr3R_5745001 RAL-340_100b 2580 chr3R 5746008 5746041 chr3R 5746254 5746307 pogo 25 262 11.5 15.0 13.2 1.8 299 chr3R 5746008 3` UTR Madm + chr3R 5746158 3` UTR Madm + chr3R 5746307 3` UTR Madm + chr3R_25_5745001 chr3R_5745001 RAL-340_100b 2581 chr3R 5746990 5746997 chr3R 5753206 5753213 diver 4 6216 30.5 9.0 19.8 0.2 6223 chr3R 5746990 intergenic Madm + chr3R 5750102 intergenic not near genes chr3R 5753213 intergenic CG2091 - chr3R_4_5750001 chr3R_5750001 RAL-340_100b 2582 chr3R 5746998 5747039 chr3R 5753205 5753255 diver 17 6213 16.5 9.0 12.8 1.2 6257 chr3R 5746998 intergenic Madm + chr3R 5750126 intergenic not near genes chr3R 5753255 intergenic CG2091 - chr3R_17_5750001 chr3R_5750001 RAL-340_100b 2583 chr3R 5772353 5772408 chr3R 5772536 5772591 29 181 6.0 8.0 7.0 3.6 238 chr3R 5772353 intron CG2082 - chr3R 5772472 intron CG2082 - chr3R 5772591 intron CG2082 - chr3R_29_5770001 chr3R_5770001 RAL-340_100b 2584 chr3R 5809087 5809094 chr3R 5809353 5809360 pogo 7 266 33.5 7.5 20.5 0.3 273 chr3R 5809087 3` UTR CG11000 + chr3R 5809224 3` UTR CG11000 + chr3R 5809360 3` UTR CG11000 + chr3R_7_5805001 chr3R_5805001 RAL-340_100b 2585 chr3R 5809095 5809105 chr3R 5809361 5809371 pogo 8 266 28.0 11.5 19.8 0.4 276 chr3R 5809095 3` UTR CG11000 + chr3R 5809233 3` UTR CG11000 + chr3R 5809371 3` UTR CG11000 + chr3R_8_5805001 chr3R_5805001 RAL-340_100b 2586 chr3R 5809111 5809126 chr3R 5809357 5809392 pogo 17 263 23.0 8.5 15.8 1.0 281 chr3R 5809111 3` UTR CG11000 + chr3R 5809252 3` UTR CG11000 + chr3R 5809392 3` UTR CG11000 + chr3R_17_5805001 chr3R_5805001 RAL-340_100b 2587 chr3R 5809129 5809138 chr3R 5809395 5809404 pogo 4 265 16.5 26.5 21.5 0.2 275 chr3R 5809129 3` UTR CG11000 + chr3R 5809266 3` UTR CG11000 + chr3R 5809404 3` UTR CG11000 + chr3R_4_5805001 chr3R_5805001 RAL-340_100b 2588 chr3R 5822357 5822406 chr3R 5823549 5823598 1360 17 1189 8.5 8.0 8.2 1.8 1241 chr3R 5822357 3` UTR CG2023 - chr3R 5822978 3` UTR CG2023 - chr3R 5823598 3` UTR CG2023 - chr3R_17_5820001 chr3R_5820001 RAL-340_100b 2589 chr3R 5846857 5846870 chr3R 5846952 5846971 9 100 15.5 3.5 9.5 0.9 114 chr3R 5846857 intergenic CG1213 +,CG14676 + chr3R 5846914 intergenic CG14676 +,CG1213 + chr3R 5846971 intergenic CG14676 +,CG1213 + chr3R_9_5845001 chr3R_5845001 RAL-340_100b 2590 chr3R 5846875 5846910 chr3R 5846950 5846990 7 90 6.0 4.0 5.0 1.2 115 chr3R 5846875 intergenic CG1213 +,CG14676 + chr3R 5846932 intergenic CG14676 +,CG1213 + chr3R 5846990 intergenic CG14676 +,CG1213 + chr3R_7_5845001 chr3R_5845001 RAL-340_100b 2591 chr3R 5895941 5895985 chr3R 5896172 5896224 20 233 5.0 10.0 7.5 2.4 283 chr3R 5895941 intron CG34113 - chr3R 5896082 intron CG34113 - chr3R 5896224 intron CG34113 - chr3R_20_5895001 chr3R_5895001 RAL-340_100b 2592 chr3R 5927550 5927559 chr3R 5927809 5927824 pogo 4 262 10.5 6.0 8.2 0.4 274 chr3R 5927550 intron CG34113 - chr3R 5927687 intron CG34113 - chr3R 5927824 intron CG34113 - chr3R_4_5925001 chr3R_5925001 RAL-340_100b 2593 chr3R 5927561 5927591 chr3R 5927800 5927806 pogo 13 248 4.0 4.0 4.0 2.6 245 chr3R 5927561 intron CG34113 - chr3R 5927684 intron CG34113 - chr3R 5927806 intron CG34113 - chr3R_13_5925001 chr3R_5925001 RAL-340_100b 2594 chr3R 5931449 5931457 chr3R 5931556 5931570 9 111 12.5 32.0 22.2 0.4 121 chr3R 5931449 intron CG34113 - chr3R 5931510 intron CG34113 - chr3R 5931570 intron CG34113 - chr3R_9_5930001 chr3R_5930001 RAL-340_100b 2595 chr3R 5935344 5935395 chr3R 5935437 5935473 38 97 3.5 3.0 3.2 9.0 129 chr3R 5935344 intron CG34113 - chr3R 5935408 intron CG34113 - chr3R 5935473 intron CG34113 - chr3R_38_5935001 chr3R_5935001 RAL-340_100b 2596 chr3R 5943380 5943417 chr3R 5943484 5943501 11 101 1.5 4.5 3.0 2.8 121 chr3R 5943380 intron CG34113 - chr3R 5943440 intron CG34113 - chr3R 5943501 intron CG34113 - chr3R_11_5940001 chr3R_5940001 RAL-340_100b 2597 chr3R 6006304 6006357 chr3R 6006414 6006441 44 106 9.5 14.0 11.8 3.4 137 chr3R 6006304 intron Rm62 - chr3R 6006372 intron Rm62 - chr3R 6006441 intron Rm62 - chr3R_44_6005001 chr3R_6005001 RAL-340_100b 2598 chr3R 6015937 6015994 chr3R 6024443 6024500 Tirant 44 8501 5.0 21.0 13.0 3.1 8563 chr3R 6015937 intergenic not near genes chr3R 6020218 intergenic not near genes chr3R 6024500 intergenic not near genes chr3R_44_6020001 chr3R_6020001 RAL-340_100b 2599 chr3R 6043620 6043672 chr3R 6043867 6043882 16 241 4.0 10.0 7.0 2.0 262 chr3R 6043620 intergenic not near genes chr3R 6043751 intergenic not near genes chr3R 6043882 intergenic not near genes chr3R_16_6040001 chr3R_6040001 RAL-340_100b 2600 chr3R 6048427 6048459 chr3R 6048535 6048567 14 107 9.5 11.0 10.2 1.2 140 chr3R 6048427 intergenic not near genes chr3R 6048497 intergenic not near genes chr3R 6048567 intergenic not near genes chr3R_14_6045001 chr3R_6045001 RAL-340_100b 2601 chr3R 6048460 6048477 chr3R 6048533 6048553 9 99 6.0 11.0 8.5 0.9 93 chr3R 6048460 intergenic not near genes chr3R 6048506 intergenic not near genes chr3R 6048553 intergenic not near genes chr3R_9_6045001 chr3R_6045001 RAL-340_100b 2602 chr3R 6090420 6090420 chr3R 10451877 10451877 18 4361457 29.0 54.0 41.5 0.4 4361457 chr3R 6090420 intron Gasp - chr3R 8271148 intergenic not near genes chr3R 10451877 intergenic not near genes chr3R_18_8270001 chr3R_8270001 RAL-340_100b 2603 chr3R 6121172 6121181 chr3R 6121415 6121424 BS 4 243 0.0 8.0 4.0 0.8 252 chr3R 6121172 intergenic not near genes chr3R 6121298 intergenic not near genes chr3R 6121424 intergenic not near genes chr3R_4_6120001 chr3R_6120001 RAL-340_100b 2604 chr3R 6158509 6158536 chr3R 6167105 6167127 Tirant 10 8605 13.0 11.0 12.0 0.8 8618 chr3R 6158509 intergenic not near genes chr3R 6162818 intergenic not near genes chr3R 6167127 intergenic CG1077 + chr3R_10_6160001 chr3R_6160001 RAL-340_100b 2605 chr3R 6175155 6175172 chr3R 6182452 6182469 HMS-Beagle2 5 7297 14.5 11.0 12.8 0.4 7314 chr3R 6175155 intergenic Osi1 + chr3R 6178812 intron CR45194 + chr3R 6182469 intergenic CR45194 + chr3R_5_6175001 chr3R_6175001 RAL-340_100b 2606 chr3R 6175176 6175201 chr3R 6182446 6182480 HMS-Beagle2 12 7277 6.5 10.5 8.5 1.3 7304 chr3R 6175176 intergenic Osi1 + chr3R 6178828 intron CR45194 + chr3R 6182480 intergenic CR45194 + chr3R_12_6175001 chr3R_6175001 RAL-340_100b 2607 chr3R 6191150 6191164 chr3R 6191255 6191269 8 104 21.5 8.5 15.0 0.5 119 chr3R 6191150 intron NPFR + chr3R 6191210 intron NPFR + chr3R 6191269 intron NPFR + chr3R_8_6190001 chr3R_6190001 RAL-340_100b 2608 chr3R 6191166 6191200 chr3R 6191248 6191301 15 94 9.5 5.5 7.5 1.8 135 chr3R 6191166 intron NPFR + chr3R 6191234 intron NPFR + chr3R 6191301 intron NPFR + chr3R_15_6190001 chr3R_6190001 RAL-340_100b 2609 chr3R 6330773 6330811 chr3R 6330913 6330932 25 137 2.5 11.0 6.8 3.2 159 chr3R 6330773 exon Osi18 + chr3R 6330852 intron Osi18 + chr3R 6330932 intron Osi18 + chr3R_25_6330001 chr3R_6330001 RAL-340_100b 2610 chr3R 6407550 6407563 chr3R 21907534 21907536 4 15499978 101.5 58.5 80.0 0.0 15499986 chr3R 6407550 5` UTR gpp + chr3R 14157543 intergenic CG31327 -,CG31533 - chr3R 21907536 intergenic CG6678 + chr3R_4_14155001 chr3R_14155001 RAL-340_100b 2611 chr3R 6414023 6414046 chr3R 21907534 21907535 5 15493502 115.0 58.5 86.8 0.1 15493512 chr3R 6414023 intron gpp + chr3R 14160779 intergenic not near genes chr3R 21907535 intergenic CG6678 + chr3R_5_14160001 chr3R_14160001 RAL-340_100b 2612 chr3R 6414054 6414067 chr3R 21907534 21907534 4 15493474 114.0 58.5 86.2 0.0 15493480 chr3R 6414054 intron gpp + chr3R 14160794 intergenic not near genes chr3R 21907534 intergenic CG6678 + chr3R_4_14160001 chr3R_14160001 RAL-340_100b 2613 chr3R 6416680 6416694 chr3R 21907534 21907535 4 15490850 92.0 58.5 75.2 0.1 15490855 chr3R 6416680 intron gpp + chr3R 14162108 intergenic not near genes chr3R 21907535 intergenic CG6678 + chr3R_4_14160001 chr3R_14160001 RAL-340_100b 2614 chr3R 6461553 6461604 chr3R 6461659 6461704 21 103 5.5 7.0 6.2 2.9 151 chr3R 6461553 intergenic not near genes chr3R 6461628 intergenic not near genes chr3R 6461704 intergenic not near genes chr3R_21_6460001 chr3R_6460001 RAL-340_100b 2615 chr3R 6484041 6484084 chr3R 6484159 6484202 10 116 7.0 9.5 8.2 1.1 161 chr3R 6484041 intron CG15186 + chr3R 6484122 intron CG15186 + chr3R 6484202 intron CG15186 + chr3R_10_6480001 chr3R_6480001 RAL-340_100b 2616 chr3R 6496637 6496687 chr3R 6496750 6496800 28 112 2.5 8.0 5.2 4.5 163 chr3R 6496637 intergenic not near genes chr3R 6496718 intergenic not near genes chr3R 6496800 intergenic not near genes chr3R_28_6495001 chr3R_6495001 RAL-340_100b 2617 chr3R 6510003 6510022 chr3R 6515109 6515123 jockey 10 5105 21.5 7.0 14.2 0.7 5120 chr3R 6510003 intergenic not near genes chr3R 6512563 intergenic not near genes chr3R 6515123 intergenic not near genes chr3R_10_6510001 chr3R_6510001 RAL-340_100b 2618 chr3R 6510025 6510047 chr3R 6515106 6515145 jockey 10 5102 15.5 6.0 10.8 0.8 5120 chr3R 6510025 intergenic not near genes chr3R 6512585 intergenic not near genes chr3R 6515145 intergenic not near genes chr3R_10_6510001 chr3R_6510001 RAL-340_100b 2619 chr3R 6519091 6519112 chr3R 6519224 6519245 11 133 12.0 1.0 6.5 1.5 154 chr3R 6519091 intergenic not near genes chr3R 6519168 intergenic not near genes chr3R 6519245 intergenic not near genes chr3R_11_6515001 chr3R_6515001 RAL-340_100b 2620 chr3R 6519117 6519141 chr3R 6519219 6519277 6 122 6.5 0.5 3.5 1.3 160 chr3R 6519117 intergenic not near genes chr3R 6519197 intergenic not near genes chr3R 6519277 intergenic not near genes chr3R_6_6515001 chr3R_6515001 RAL-340_100b 2621 chr3R 6610025 6610037 chr3R 6610202 6610209 6 172 15.5 7.5 11.5 0.5 184 chr3R 6610025 intergenic not near genes chr3R 6610117 intergenic not near genes chr3R 6610209 intergenic not near genes chr3R_6_6610001 chr3R_6610001 RAL-340_100b 2622 chr3R 6610038 6610042 chr3R 6610200 6610208 5 171 14.5 7.0 10.8 0.4 170 chr3R 6610038 intergenic not near genes chr3R 6610123 intergenic not near genes chr3R 6610208 intergenic not near genes chr3R_5_6610001 chr3R_6610001 RAL-340_100b 2623 chr3R 6610043 6610061 chr3R 6610198 6610227 10 165 11.5 6.5 9.0 1.0 184 chr3R 6610043 intergenic not near genes chr3R 6610135 intergenic not near genes chr3R 6610227 intergenic not near genes chr3R_10_6610001 chr3R_6610001 RAL-340_100b 2624 chr3R 6621870 6621887 chr3R 6621980 6622004 11 114 23.0 10.0 16.5 0.6 134 chr3R 6621870 intergenic not near genes chr3R 6621937 intergenic not near genes chr3R 6622004 intergenic not near genes chr3R_11_6620001 chr3R_6620001 RAL-340_100b 2625 chr3R 6624234 6624280 chr3R 6624341 6624387 12 106 4.0 1.0 2.5 3.4 153 chr3R 6624234 intergenic not near genes chr3R 6624310 intergenic not near genes chr3R 6624387 intergenic not near genes chr3R_12_6620001 chr3R_6620001 RAL-340_100b 2626 chr3R 6639884 6639930 chr3R 6639987 6639998 15 98 6.5 0.5 3.5 3.3 114 chr3R 6639884 intergenic not near genes chr3R 6639941 intergenic not near genes chr3R 6639998 intergenic not near genes chr3R_15_6635001 chr3R_6635001 RAL-340_100b 2627 chr3R 6655741 6655784 chr3R 6656035 6656081 24 294 13.0 9.5 11.2 2.0 340 chr3R 6655741 exon Taf1 + chr3R 6655911 3` UTR Taf1 + chr3R 6656081 intergenic Taf1 +,CG1307 - chr3R_24_6655001 chr3R_6655001 RAL-340_100b 2628 chr3R 6663579 6663636 chr3R 6663684 6663741 32 102 15.0 13.0 14.0 2.1 162 chr3R 6663579 intron lab - chr3R 6663660 intron lab - chr3R 6663741 intron lab - chr3R_32_6660001 chr3R_6660001 RAL-340_100b 2629 chr3R 6670546 6670588 chr3R 6670680 6670722 26 131 11.0 10.0 10.5 2.3 176 chr3R 6670546 intron lab - chr3R 6670634 intron lab - chr3R 6670722 intron lab - chr3R_26_6670001 chr3R_6670001 RAL-340_100b 2630 chr3R 6670597 6670601 chr3R 6670679 6670735 5 121 6.5 10.0 8.2 0.5 138 chr3R 6670597 intron lab - chr3R 6670666 intron lab - chr3R 6670735 intron lab - chr3R_5_6670001 chr3R_6670001 RAL-340_100b 2631 chr3R 6705663 6705680 chr3R 6705912 6705929 4 249 0.5 7.0 3.8 0.8 266 chr3R 6705663 intergenic not near genes chr3R 6705796 intergenic not near genes chr3R 6705929 intergenic not near genes chr3R_4_6705001 chr3R_6705001 RAL-340_100b 2632 chr3R 6705682 6705709 chr3R 6705908 6705958 12 247 0.5 6.5 3.5 2.7 276 chr3R 6705682 intergenic not near genes chr3R 6705820 intergenic not near genes chr3R 6705958 intergenic not near genes chr3R_12_6705001 chr3R_6705001 RAL-340_100b 2633 chr3R 6717703 6717706 chr3R 6717826 6717853 7 146 2.0 8.0 5.0 1.2 150 chr3R 6717703 intron pb - chr3R 6717778 intron pb - chr3R 6717853 intron pb - chr3R_7_6715001 chr3R_6715001 RAL-340_100b 2634 chr3R 6737490 6737529 chr3R 6739288 6739299 Doc 9 1792 8.0 8.5 8.2 1.0 1809 chr3R 6737490 intron pb - chr3R 6738394 intron pb - chr3R 6739299 intron pb - chr3R_9_6735001 chr3R_6735001 RAL-340_100b 2635 chr3R 6740996 6741036 chr3R 6741104 6741144 10 106 4.5 12.5 8.5 1.1 148 chr3R 6740996 intron pb - chr3R 6741070 intron pb - chr3R 6741144 intron pb - chr3R_10_6740001 chr3R_6740001 RAL-340_100b 2636 chr3R 6819614 6819632 chr3R 6819723 6819735 13 108 10.0 4.0 7.0 1.6 121 chr3R 6819614 intergenic not near genes chr3R 6819674 intergenic 7SLRNA:CR32864 -,7SLRNA:CR42652 - chr3R 6819735 intergenic 7SLRNA:CR32864 -,7SLRNA:CR42652 - chr3R_13_6815001 chr3R_6815001 RAL-340_100b 2637 chr3R 6819633 6819648 chr3R 6819721 6819757 10 104 9.5 3.5 6.5 1.3 124 chr3R 6819633 intergenic 7SLRNA:CR32864 -,7SLRNA:CR42652 - chr3R 6819695 intergenic 7SLRNA:CR32864 -,7SLRNA:CR42652 - chr3R 6819757 intergenic 7SLRNA:CR32864 -,7SLRNA:CR42652 - chr3R_10_6815001 chr3R_6815001 RAL-340_100b 2638 chr3R 6828003 6828035 chr3R 6828104 6828136 16 100 6.0 5.5 5.8 2.4 133 chr3R 6828003 intron Scr - chr3R 6828070 intron Scr - chr3R 6828136 intron Scr - chr3R_16_6825001 chr3R_6825001 RAL-340_100b 2639 chr3R 6856367 6856389 chr3R 6856509 6856531 13 141 2.0 3.0 2.5 3.7 164 chr3R 6856367 intergenic not near genes chr3R 6856449 intergenic not near genes chr3R 6856531 intergenic not near genes chr3R_13_6855001 chr3R_6855001 RAL-340_100b 2640 chr3R 6856391 6856399 chr3R 6856507 6856541 7 138 1.5 3.0 2.2 2.2 150 chr3R 6856391 intergenic not near genes chr3R 6856466 intergenic not near genes chr3R 6856541 intergenic not near genes chr3R_7_6855001 chr3R_6855001 RAL-340_100b 2641 chr3R 6862200 6862241 chr3R 6862312 6862336 9 107 9.5 20.5 15.0 0.6 136 chr3R 6862200 intergenic not near genes chr3R 6862268 intergenic not near genes chr3R 6862336 intergenic not near genes chr3R_9_6860001 chr3R_6860001 RAL-340_100b 2642 chr3R 6918049 6918095 chr3R 6918150 6918198 15 99 2.0 4.5 3.2 3.6 149 chr3R 6918049 intron Antp - chr3R 6918124 intron Antp - chr3R 6918198 intron Antp - chr3R_15_6915001 chr3R_6915001 RAL-340_100b 2643 chr3R 6990440 6990453 chr3R 6990555 6990568 5 114 18.0 4.0 11.0 0.4 128 chr3R 6990440 intron Antp - chr3R 6990504 intron Antp - chr3R 6990568 intron Antp - chr3R_5_6990001 chr3R_6990001 RAL-340_100b 2644 chr3R 6990454 6990491 chr3R 6990553 6990590 11 112 3.0 4.0 3.5 2.4 136 chr3R 6990454 intron Antp - chr3R 6990522 intron Antp - chr3R 6990590 intron Antp - chr3R_11_6990001 chr3R_6990001 RAL-340_100b 2645 chr3R 6991150 6991208 chr3R 6991251 6991299 27 93 10.0 3.5 6.8 3.5 149 chr3R 6991150 intron Antp - chr3R 6991224 intron Antp - chr3R 6991299 intron Antp - chr3R_27_6990001 chr3R_6990001 RAL-340_100b 2646 chr3R 6997077 6997089 chr3R 9418239 9418239 F-element 8 2421158 27.0 116.5 71.8 0.1 2421162 chr3R 6997077 intron Antp - chr3R 8207658 intergenic not near genes chr3R 9418239 intron ps + chr3R_8_8205001 chr3R_8205001 RAL-340_100b 2647 chr3R 7012179 7012198 chr3R 7012282 7012296 7 102 26.0 8.0 17.0 0.4 117 chr3R 7012179 intergenic not near genes chr3R 7012238 intergenic not near genes chr3R 7012296 intergenic not near genes chr3R_7_7010001 chr3R_7010001 RAL-340_100b 2648 chr3R 7012199 7012232 chr3R 7012280 7012335 25 96 8.0 7.5 7.8 2.8 136 chr3R 7012199 intergenic not near genes chr3R 7012267 intergenic not near genes chr3R 7012335 intergenic not near genes chr3R_25_7010001 chr3R_7010001 RAL-340_100b 2649 chr3R 7051096 7051153 chr3R 7051200 7051257 26 100 8.5 6.5 7.5 3.1 161 chr3R 7051096 intergenic not near genes chr3R 7051176 intergenic not near genes chr3R 7051257 intergenic not near genes chr3R_26_7050001 chr3R_7050001 RAL-340_100b 2650 chr3R 7094694 7094694 chr3R 7773344 7773344 11 678650 38.0 30.0 34.0 0.3 678650 chr3R 7094694 3` UTR e(y)2b + chr3R 7434019 intergenic not near genes chr3R 7773344 intergenic not near genes chr3R_11_7430001 chr3R_7430001 RAL-340_100b 2651 chr3R 7103264 7103312 chr3R 7103364 7103413 14 96 9.0 9.0 9.0 1.4 149 chr3R 7103264 intron Alh - chr3R 7103338 intron Alh - chr3R 7103413 intron Alh - chr3R_14_7100001 chr3R_7100001 RAL-340_100b 2652 chr3R 7126479 7126529 chr3R 7126599 7126631 19 115 8.5 15.0 11.8 1.5 152 chr3R 7126479 3` UTR,3` UTR CG10098 +,CG10068 - chr3R 7126555 3` UTR CG10068 - chr3R 7126631 3` UTR CG10068 - chr3R_19_7125001 chr3R_7125001 RAL-340_100b 2653 chr3R 7173657 7173706 chr3R 7173759 7173811 17 103 9.5 5.0 7.2 2.1 154 chr3R 7173657 intron sas + chr3R 7173734 intron sas + chr3R 7173811 intron sas + chr3R_17_7170001 chr3R_7170001 RAL-340_100b 2654 chr3R 7217448 7217484 chr3R 7217682 7217696 17 239 13.0 20.0 16.5 1.0 248 chr3R 7217448 intergenic CG14605 -,CG14606 - chr3R 7217572 intergenic CG14605 -,CG14606 - chr3R 7217696 3` UTR CG14605 - chr3R_17_7215001 chr3R_7215001 RAL-340_100b 2655 chr3R 7332137 7332151 chr3R 7332234 7332253 4 99 23.0 7.5 15.2 0.2 116 chr3R 7332137 intergenic CR44337 + chr3R 7332195 intergenic CR44337 + chr3R 7332253 intergenic CR44337 + chr3R_4_7330001 chr3R_7330001 RAL-340_100b 2656 chr3R 7332159 7332179 chr3R 7332221 7332235 11 87 6.5 7.0 6.8 1.4 76 chr3R 7332159 intergenic CR44337 + chr3R 7332197 intergenic CR44337 + chr3R 7332235 intergenic CR44337 + chr3R_11_7330001 chr3R_7330001 RAL-340_100b 2657 chr3R 7402155 7402165 chr3R 7402286 7402291 5 127 75.5 26.5 51.0 0.1 136 chr3R 7402155 intergenic not near genes chr3R 7402223 intergenic not near genes chr3R 7402291 intergenic not near genes chr3R_5_7400001 chr3R_7400001 RAL-340_100b 2658 chr3R 7402167 7402183 chr3R 7402278 7402280 16 118 55.5 17.0 36.2 0.4 113 chr3R 7402167 intergenic not near genes chr3R 7402224 intergenic not near genes chr3R 7402280 intergenic not near genes chr3R_16_7400001 chr3R_7400001 RAL-340_100b 2659 chr3R 7402184 7402188 chr3R 7402285 7402315 8 116 52.0 26.5 39.2 0.2 131 chr3R 7402184 intergenic not near genes chr3R 7402250 intergenic not near genes chr3R 7402315 intergenic not near genes chr3R_8_7400001 chr3R_7400001 RAL-340_100b 2660 chr3R 7402189 7402207 chr3R 7402278 7402333 28 111 24.0 17.0 20.5 1.3 144 chr3R 7402189 intergenic not near genes chr3R 7402261 intergenic not near genes chr3R 7402333 intergenic not near genes chr3R_28_7400001 chr3R_7400001 RAL-340_100b 2661 chr3R 7447971 7448011 chr3R 7448074 7448114 12 102 6.0 11.5 8.8 1.2 143 chr3R 7447971 intergenic not near genes chr3R 7448042 intergenic not near genes chr3R 7448114 intergenic not near genes chr3R_12_7445001 chr3R_7445001 RAL-340_100b 2662 chr3R 7574596 7574623 chr3R 7574701 7574730 6 103 12.0 7.5 9.8 0.6 134 chr3R 7574596 intron CG34127 - chr3R 7574663 intron CG34127 - chr3R 7574730 intron CG34127 - chr3R_6_7570001 chr3R_7570001 RAL-340_100b 2663 chr3R 7574629 7574652 chr3R 7574726 7574759 7 98 7.0 17.5 12.2 0.5 130 chr3R 7574629 intron CG34127 - chr3R 7574694 intron CG34127 - chr3R 7574759 intron CG34127 - chr3R_7_7570001 chr3R_7570001 RAL-340_100b 2664 chr3R 7621529 7621564 chr3R 7621645 7621674 5 114 8.0 9.0 8.5 0.5 145 chr3R 7621529 intron CG34127 - chr3R 7621602 intron CG34127 - chr3R 7621674 intron CG34127 - chr3R_5_7620001 chr3R_7620001 RAL-340_100b 2665 chr3R 7641036 7641076 chr3R 7642625 7642664 hobo 11 1587 9.0 6.0 7.5 1.3 1628 chr3R 7641036 intergenic not near genes chr3R 7641850 intergenic not near genes chr3R 7642664 intergenic not near genes chr3R_11_7640001 chr3R_7640001 RAL-340_100b 2666 chr3R 7641078 7641093 chr3R 7642623 7642682 hobo 10 1580 5.5 5.5 5.5 1.5 1604 chr3R 7641078 intergenic not near genes chr3R 7641880 intergenic not near genes chr3R 7642682 intergenic not near genes chr3R_10_7640001 chr3R_7640001 RAL-340_100b 2667 chr3R 7652460 7652476 chr3R 7652600 7652614 4 137 6.5 5.5 6.0 0.6 154 chr3R 7652460 intergenic not near genes chr3R 7652537 intergenic not near genes chr3R 7652614 intergenic not near genes chr3R_4_7650001 chr3R_7650001 RAL-340_100b 2668 chr3R 7688730 7688735 chr3R 7689110 7689115 4 380 19.5 9.0 14.2 0.3 385 chr3R 7688730 intron Nlg1 + chr3R 7688922 intron Nlg1 + chr3R 7689115 intron Nlg1 + chr3R_4_7685001 chr3R_7685001 RAL-340_100b 2669 chr3R 7688739 7688744 chr3R 7689119 7689124 6 380 18.0 11.5 14.8 0.4 385 chr3R 7688739 intron Nlg1 + chr3R 7688932 intron Nlg1 + chr3R 7689124 intron Nlg1 + chr3R_6_7685001 chr3R_7685001 RAL-340_100b 2670 chr3R 7688745 7688776 chr3R 7689117 7689156 18 378 13.5 10.5 12.0 1.4 411 chr3R 7688745 intron Nlg1 + chr3R 7688950 intron Nlg1 + chr3R 7689156 intron Nlg1 + chr3R_18_7685001 chr3R_7685001 RAL-340_100b 2671 chr3R 7729456 7729495 chr3R 7737404 7737458 Stalker2 16 7962 10.0 4.0 7.0 2.0 8002 chr3R 7729456 intergenic not near genes chr3R 7733457 intergenic not near genes chr3R 7737458 intergenic not near genes chr3R_16_7730001 chr3R_7730001 RAL-340_100b 2672 chr3R 7740853 7740912 chr3R 7740962 7740976 29 105 7.0 6.5 6.8 3.7 123 chr3R 7740853 intergenic CR44935 + chr3R 7740914 intergenic CR44935 + chr3R 7740976 intergenic CR44935 + chr3R_29_7740001 chr3R_7740001 RAL-340_100b 2673 chr3R 7760247 7760283 chr3R 7760764 7760817 17 531 10.5 3.5 7.0 2.1 570 chr3R 7760247 intron Sp7 + chr3R 7760532 intron Sp7 + chr3R 7760817 5` UTR Sp7 + chr3R_17_7760001 chr3R_7760001 RAL-340_100b 2674 chr3R 7094694 7094700 chr3R 7773344 7773344 4 678648 39.0 30.0 34.5 0.1 678650 chr3R 7094694 3` UTR e(y)2b + chr3R 7434019 intergenic not near genes chr3R 7773344 intergenic not near genes chr3R_4_7430001 chr3R_7430001 RAL-340_100b 2675 chr3R 7773344 7773344 chr3R 7890531 7890534 8 117188 28.5 15.0 21.8 0.4 117190 chr3R 7773344 intergenic not near genes chr3R 7831939 intron CG34384 + chr3R 7890534 intron mRpS9 - chr3R_8_7830001 chr3R_7830001 RAL-340_100b 2676 chr3R 7773344 7773344 chr3R 13217322 13217327 4 5443979 28.5 48.5 38.5 0.1 5443983 chr3R 7773344 intergenic not near genes chr3R 10495336 intergenic not near genes chr3R 13217327 intergenic not near genes chr3R_4_10495001 chr3R_10495001 RAL-340_100b 2677 chr3R 7773344 7773344 chr3R 21907534 21907536 8 14134191 28.5 58.5 43.5 0.2 14134192 chr3R 7773344 intergenic not near genes chr3R 14840440 intron btsz - chr3R 21907536 intergenic CG6678 + chr3R_8_14840001 chr3R_14840001 RAL-340_100b 2678 chr3R 7775897 7775947 chr3R 7775998 7776051 13 100 4.0 12.5 8.2 1.4 154 chr3R 7775897 intergenic not near genes chr3R 7775974 intergenic not near genes chr3R 7776051 intergenic not near genes chr3R_13_7775001 chr3R_7775001 RAL-340_100b 2679 chr3R 7773344 7773344 chr3R 7890529 7890532 16 117187 28.5 16.5 22.5 0.7 117188 chr3R 7773344 intergenic not near genes chr3R 7831938 intron CG34384 + chr3R 7890532 intron mRpS9 - chr3R_16_7830001 chr3R_7830001 RAL-340_100b 2680 chr3R 7951440 7951493 chr3R 7951564 7951567 12 119 7.0 9.0 8.0 1.3 127 chr3R 7951440 intron dsx - chr3R 7951504 intron dsx - chr3R 7951567 intron dsx - chr3R_12_7950001 chr3R_7950001 RAL-340_100b 2681 chr3R 7956607 7956655 chr3R 7956725 7956773 16 115 8.5 9.5 9.0 1.6 166 chr3R 7956607 intron dsx - chr3R 7956690 intron dsx - chr3R 7956773 intron dsx - chr3R_16_7955001 chr3R_7955001 RAL-340_100b 2682 chr3R 7973299 7973335 chr3R 7974386 7974414 1360 14 1085 13.5 9.5 11.5 1.1 1115 chr3R 7973299 intergenic not near genes chr3R 7973856 intergenic not near genes chr3R 7974414 3` UTR CD98hc - chr3R_14_7970001 chr3R_7970001 RAL-340_100b 2683 chr3R 8033013 8033066 chr3R 8033127 8033180 16 113 4.5 8.0 6.2 2.2 167 chr3R 8033013 intergenic CG11035 -,unc-45 + chr3R 8033096 intergenic CG11035 -,unc-45 + chr3R 8033180 intergenic unc-45 +,CG11035 - chr3R_16_8030001 chr3R_8030001 RAL-340_100b 2684 chr3R 8037518 8037561 chr3R 21733672 21733687 5 13696139 17.0 73.0 45.0 0.1 13696169 chr3R 8037518 intergenic not near genes chr3R 14885602 exon Rrp6 - chr3R 21733687 intergenic not near genes chr3R_5_14885001 chr3R_14885001 RAL-340_100b 2685 chr3R 8090260 8090302 chr3R 8090462 8090503 17 200 7.5 1.0 4.2 3.3 243 chr3R 8090260 5` UTR CR44330 + chr3R 8090382 intergenic CR44330 + chr3R 8090503 intergenic CR44330 + chr3R_17_8090001 chr3R_8090001 RAL-340_100b 2686 chr3R 8090541 8090566 chr3R 8094043 8094068 297 18 3499 0.5 16.0 8.2 2.0 3527 chr3R 8090541 intergenic CR44330 + chr3R 8092304 intergenic not near genes chr3R 8094068 intergenic CG7900 + chr3R_18_8090001 chr3R_8090001 RAL-340_100b 2687 chr3R 8094387 8094399 chr3R 8099717 8099729 Transpac 10 5328 14.5 9.5 12.0 0.8 5342 chr3R 8094387 intron CG7900 + chr3R 8097058 intron CG7900 + chr3R 8099729 intron CG7900 + chr3R_10_8095001 chr3R_8095001 RAL-340_100b 2688 chr3R 8094400 8094429 chr3R 8099711 8099759 Transpac 7 5325 10.0 7.0 8.5 0.7 5359 chr3R 8094400 intron CG7900 + chr3R 8097080 intron CG7900 + chr3R 8099759 intron CG7900 + chr3R_7_8095001 chr3R_8095001 RAL-340_100b 2689 chr3R 8101748 8101784 chr3R 8104857 8104861 G2 14 3101 6.0 12.0 9.0 1.4 3113 chr3R 8101748 exon CG7900 + chr3R 8103304 intron CG7900 + chr3R 8104861 3` UTR CG7900 + chr3R_14_8100001 chr3R_8100001 RAL-340_100b 2690 chr3R 8207527 8207582 chr3R 8208398 8208452 F-element 23 863 8.0 7.0 7.5 2.7 925 chr3R 8207527 intergenic not near genes chr3R 8207990 intergenic not near genes chr3R 8208452 intergenic not near genes chr3R_23_8205001 chr3R_8205001 RAL-340_100b 2691 chr3R 8212991 8213039 chr3R 8213094 8213137 10 102 4.5 4.5 4.5 1.8 146 chr3R 8212991 intergenic not near genes chr3R 8213064 intergenic not near genes chr3R 8213137 intergenic not near genes chr3R_10_8210001 chr3R_8210001 RAL-340_100b 2692 chr3R 8255499 8255539 chr3R 8255596 8255621 8 96 13.5 13.0 13.2 0.6 122 chr3R 8255499 intron mtg + chr3R 8255560 intron mtg + chr3R 8255621 intron mtg + chr3R_8_8255001 chr3R_8255001 RAL-340_100b 2693 chr3R 8273711 8273765 chr3R 8273823 8273877 35 108 6.5 4.0 5.2 5.6 166 chr3R 8273711 intergenic not near genes chr3R 8273794 intergenic not near genes chr3R 8273877 intergenic not near genes chr3R_35_8270001 chr3R_8270001 RAL-340_100b 2694 chr3R 8287387 8287387 chr3R 21907534 21907536 6 13620148 34.0 58.5 46.2 0.1 13620149 chr3R 8287387 intron CR44318 + chr3R 15097462 3` UTR CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_6_15095001 chr3R_15095001 RAL-340_100b 2695 chr3R 8339233 8339244 chr3R 21907534 21907536 5 13568294 40.5 58.5 49.5 0.1 13568303 chr3R 8339233 intergenic not near genes chr3R 15123384 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_5_15120001 chr3R_15120001 RAL-340_100b 2696 chr3R 8339246 8339247 chr3R 21907534 21907536 89 13568289 40.0 58.5 49.2 1.8 13568290 chr3R 8339246 intergenic not near genes chr3R 15123391 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_89_15120001 chr3R_15120001 RAL-340_100b 2697 chr3R 8358128 8358138 chr3R 8358391 8358407 4 268 8.0 13.5 10.8 0.3 279 chr3R 8358128 intron stck + chr3R 8358268 intron stck + chr3R 8358407 intron stck + chr3R_4_8355001 chr3R_8355001 RAL-340_100b 2698 chr3R 8374147 8374152 chr3R 8374282 8374292 4 139 32.0 12.0 22.0 0.2 145 chr3R 8374147 intron CG45263 - chr3R 8374220 intron CG45263 - chr3R 8374292 intron CG45263 - chr3R_4_8370001 chr3R_8370001 RAL-340_100b 2699 chr3R 8374153 8374166 chr3R 8374281 8374306 10 137 24.5 11.5 18.0 0.5 153 chr3R 8374153 intron CG45263 - chr3R 8374230 intron CG45263 - chr3R 8374306 intron CG45263 - chr3R_10_8370001 chr3R_8370001 RAL-340_100b 2700 chr3R 8402995 8403038 chr3R 8412171 8412222 roo 25 9183 16.5 12.0 14.2 1.6 9227 chr3R 8402995 intron CG45263 - chr3R 8407608 intron CG45263 - chr3R 8412222 intron CG45263 - chr3R_25_8405001 chr3R_8405001 RAL-340_100b 2701 chr3R 8460232 8460270 chr3R 8460332 8460372 27 96 41.0 14.5 27.8 0.9 140 chr3R 8460232 intron CG45263 - chr3R 8460302 intron CG45263 - chr3R 8460372 intron CG45263 - chr3R_27_8460001 chr3R_8460001 RAL-340_100b 2702 chr3R 8534755 8534761 chr3R 8535037 8535043 5 282 27.5 16.0 21.8 0.2 288 chr3R 8534755 intergenic not near genes chr3R 8534899 intergenic not near genes chr3R 8535043 intergenic not near genes chr3R_5_8530001 chr3R_8530001 RAL-340_100b 2703 chr3R 8534766 8534807 chr3R 8535048 8535087 28 280 8.0 17.0 12.5 2.1 321 chr3R 8534766 intergenic not near genes chr3R 8534926 intergenic not near genes chr3R 8535087 intergenic not near genes chr3R_28_8530001 chr3R_8530001 RAL-340_100b 2704 chr3R 8534808 8534813 chr3R 8535045 8535063 6 261 5.0 17.0 11.0 0.5 255 chr3R 8534808 intergenic not near genes chr3R 8534936 intergenic not near genes chr3R 8535063 intergenic not near genes chr3R_6_8530001 chr3R_8530001 RAL-340_100b 2705 chr3R 7773343 7773344 chr3R 8558233 8558233 5 784889 28.5 72.0 50.2 0.1 784890 chr3R 7773343 intergenic not near genes chr3R 8165788 intron grn - chr3R 8558233 intergenic not near genes chr3R_5_8165001 chr3R_8165001 RAL-340_100b 2706 chr3R 8570455 8570508 chr3R 8575116 8575154 HMS-Beagle 20 4658 9.5 17.0 13.2 1.4 4699 chr3R 8570455 intergenic not near genes chr3R 8572804 intergenic not near genes chr3R 8575154 intergenic not near genes chr3R_20_8570001 chr3R_8570001 RAL-340_100b 2707 chr3R 8575903 8575958 chr3R 8576011 8576061 26 105 7.0 7.0 7.0 3.2 158 chr3R 8575903 intergenic not near genes chr3R 8575982 intergenic not near genes chr3R 8576061 intergenic not near genes chr3R_26_8575001 chr3R_8575001 RAL-340_100b 2708 chr3R 8601764 8601776 chr3R 8610942 8610954 roo 6 9177 22.0 14.0 18.0 0.3 9190 chr3R 8601764 intron 5-HT2B + chr3R 8606359 intron 5-HT2B + chr3R 8610954 intron 5-HT2B + chr3R_6_8605001 chr3R_8605001 RAL-340_100b 2709 chr3R 8601777 8601798 chr3R 8610921 8610976 roo 11 9171 10.0 10.0 10.0 1.0 9199 chr3R 8601777 intron 5-HT2B + chr3R 8606376 intron 5-HT2B + chr3R 8610976 intron 5-HT2B + chr3R_11_8605001 chr3R_8605001 RAL-340_100b 2710 chr3R 8614791 8614820 chr3R 8614989 8615029 23 217 1.0 17.0 9.0 2.3 238 chr3R 8614791 intron 5-HT2B + chr3R 8614910 intron 5-HT2B + chr3R 8615029 intron 5-HT2B + chr3R_23_8610001 chr3R_8610001 RAL-340_100b 2711 chr3R 8638045 8638089 chr3R 8638173 8638225 30 131 7.5 13.0 10.2 2.7 180 chr3R 8638045 intergenic not near genes chr3R 8638135 intergenic not near genes chr3R 8638225 intergenic not near genes chr3R_30_8635001 chr3R_8635001 RAL-340_100b 2712 chr3R 8639661 8639713 chr3R 8639768 8639803 30 100 5.5 8.5 7.0 3.8 142 chr3R 8639661 intergenic not near genes chr3R 8639732 intergenic not near genes chr3R 8639803 intergenic not near genes chr3R_30_8635001 chr3R_8635001 RAL-340_100b 2713 chr3R 8684083 8684097 chr3R 8684185 8684199 6 100 11.0 21.5 16.2 0.3 116 chr3R 8684083 intron CR44937 - chr3R 8684141 intron CR44937 - chr3R 8684199 intron CR44937 - chr3R_6_8680001 chr3R_8680001 RAL-340_100b 2714 chr3R 8685273 8685315 chr3R 8685398 8685440 24 124 9.0 9.0 9.0 2.4 167 chr3R 8685273 intron CR44937 - chr3R 8685356 intron CR44937 - chr3R 8685440 intron CR44937 - chr3R_24_8685001 chr3R_8685001 RAL-340_100b 2715 chr3R 8707334 8707385 chr3R 8709800 8709836 jockey 60 2462 11.0 33.5 22.2 2.6 2502 chr3R 8707334 intergenic not near genes chr3R 8708585 intergenic not near genes chr3R 8709836 intergenic not near genes chr3R_60_8705001 chr3R_8705001 RAL-340_100b 2716 chr3R 8894847 8894881 chr3R 8896028 8896062 1360 18 1178 9.0 14.0 11.5 1.4 1215 chr3R 8894847 intron pyd - chr3R 8895454 intron pyd - chr3R 8896062 intron pyd - chr3R_18_8895001 chr3R_8895001 RAL-340_100b 2717 chr3R 8894882 8894897 chr3R 8896032 8896078 1360 13 1176 7.0 16.0 11.5 1.0 1196 chr3R 8894882 intron pyd - chr3R 8895480 intron pyd - chr3R 8896078 intron pyd - chr3R_13_8895001 chr3R_8895001 RAL-340_100b 2718 chr3R 8894898 8894903 chr3R 8896027 8896084 1360 6 1172 5.5 14.0 9.8 0.6 1186 chr3R 8894898 intron pyd - chr3R 8895491 intron pyd - chr3R 8896084 intron pyd - chr3R_6_8895001 chr3R_8895001 RAL-340_100b 2719 chr3R 9036703 9036748 chr3R 9036813 9036814 9 106 4.0 13.0 8.5 0.9 111 chr3R 9036703 intron neur - chr3R 9036758 intron neur - chr3R 9036814 intron neur - chr3R_9_9035001 chr3R_9035001 RAL-340_100b 2720 chr3R 9101830 9101865 chr3R 9101937 9101988 13 119 11.0 12.0 11.5 1.0 158 chr3R 9101830 intron pum - chr3R 9101909 intron pum - chr3R 9101988 intron pum - chr3R_13_9100001 chr3R_9100001 RAL-340_100b 2721 chr3R 9108839 9108884 chr3R 9108940 9108984 28 98 7.0 5.0 6.0 4.0 145 chr3R 9108839 intron pum - chr3R 9108912 intron pum - chr3R 9108984 intron pum - chr3R_28_9105001 chr3R_9105001 RAL-340_100b 2722 chr3R 9141115 9141170 chr3R 9141224 9141279 44 105 9.0 7.5 8.2 4.8 164 chr3R 9141115 intron pum - chr3R 9141197 intron pum - chr3R 9141279 intron pum - chr3R_44_9140001 chr3R_9140001 RAL-340_100b 2723 chr3R 9144139 9144146 chr3R 21907534 21907534 5 12763394 100.5 58.5 79.5 0.1 12763395 chr3R 9144139 intron pum - chr3R 15525836 intergenic not near genes chr3R 21907534 intergenic CG6678 + chr3R_5_15525001 chr3R_15525001 RAL-340_100b 2724 chr3R 9192849 9192904 chr3R 9192960 9193009 12 110 3.5 5.0 4.2 2.3 160 chr3R 9192849 intron pum - chr3R 9192929 intron pum - chr3R 9193009 intron pum - chr3R_12_9190001 chr3R_9190001 RAL-340_100b 2725 chr3R 9284855 9284911 chr3R 9284964 9284970 20 106 3.5 7.0 5.2 3.2 115 chr3R 9284855 intergenic not near genes chr3R 9284912 intergenic not near genes chr3R 9284970 intergenic not near genes chr3R_20_9280001 chr3R_9280001 RAL-340_100b 2726 chr3R 9319563 9319602 chr3R 9320016 9320062 jockey 25 458 9.5 16.5 13.0 1.8 499 chr3R 9319563 intron CG8861 - chr3R 9319812 intron CG8861 - chr3R 9320062 intron CG8861 - chr3R_25_9315001 chr3R_9315001 RAL-340_100b 2727 chr3R 9350488 9350532 chr3R 9350585 9350588 41 101 4.5 5.0 4.8 7.1 100 chr3R 9350488 intron CG45050 + chr3R 9350538 intron CG45050 + chr3R 9350588 intron CG45050 + chr3R_41_9350001 chr3R_9350001 RAL-340_100b 2728 chr3R 9361807 9361837 chr3R 9362056 9362092 pogo 15 261 17.5 7.0 12.2 1.1 285 chr3R 9361807 3` UTR CG45050 + chr3R 9361950 3` UTR CG45050 + chr3R 9362092 3` UTR CG45050 + chr3R_15_9360001 chr3R_9360001 RAL-340_100b 2729 chr3R 9362955 9363005 chr3R 9363069 9363119 17 114 10.0 5.5 7.8 1.9 164 chr3R 9362955 3` UTR CG45050 + chr3R 9363037 intergenic CG45050 +,CG18473 + chr3R 9363119 intergenic CG45050 +,CG18473 + chr3R_17_9360001 chr3R_9360001 RAL-340_100b 2730 chr3R 9393035 9393035 chr3R 21907534 21907536 5 12514499 31.5 58.5 45.0 0.1 12514501 chr3R 9393035 intron FER - chr3R 15650286 intergenic not near genes chr3R 21907536 intergenic CG6678 + chr3R_5_15650001 chr3R_15650001 RAL-340_100b 2731 chr3R 9434672 9434721 chr3R 9434784 9434833 15 106 8.5 8.0 8.2 1.6 161 chr3R 9434672 intron ps + chr3R 9434752 intron ps + chr3R 9434833 intron ps + chr3R_15_9430001 chr3R_9430001 RAL-340_100b 2732 chr3R 9550571 9550625 chr3R 9550689 9550744 35 117 10.5 7.5 9.0 3.5 173 chr3R 9550571 intron,intron mura -,CR42549 - chr3R 9550658 intron,intron mura -,CR42549 - chr3R 9550744 intron,intron mura -,CR42549 - chr3R_35_9550001 chr3R_9550001 RAL-340_100b 2733 chr3R 9586670 9586689 chr3R 9586787 9586806 10 116 9.0 17.0 13.0 0.7 136 chr3R 9586670 intergenic CG8301 +,P58IPK + chr3R 9586738 intergenic CG8301 +,P58IPK + chr3R 9586806 intergenic P58IPK +,CG8301 + chr3R_10_9585001 chr3R_9585001 RAL-340_100b 2734 chr3R 9586694 9586723 chr3R 9586786 9586840 18 115 5.0 16.5 10.8 1.5 146 chr3R 9586694 intergenic CG8301 +,P58IPK + chr3R 9586767 intergenic CG8301 +,P58IPK + chr3R 9586840 intergenic P58IPK +,CG8301 + chr3R_18_9585001 chr3R_9585001 RAL-340_100b 2735 chr3R 9601437 9601493 chr3R 9601580 9601635 21 136 5.5 5.5 5.5 3.2 198 chr3R 9601437 intron CG8312 + chr3R 9601536 intron CG8312 + chr3R 9601635 intron CG8312 + chr3R_21_9600001 chr3R_9600001 RAL-340_100b 2736 chr3R 9620899 9620956 chr3R 21907534 21907536 36 12286582 17.5 58.5 38.0 0.9 12286637 chr3R 9620899 intron CG8312 + chr3R 15764218 intergenic not near genes chr3R 21907536 intergenic CG6678 + chr3R_36_15760001 chr3R_15760001 RAL-340_100b 2737 chr3R 9856839 9856855 chr3R 9856944 9856945 7 102 17.0 8.5 12.8 0.5 106 chr3R 9856839 intron Teh1 - chr3R 9856892 intron Teh1 - chr3R 9856945 intron Teh1 - chr3R_7_9855001 chr3R_9855001 RAL-340_100b 2738 chr3R 9878002 9878027 chr3R 9878108 9878118 11 109 10.5 6.0 8.2 1.2 116 chr3R 9878002 intron,intron Glut4EF +,CR45029 - chr3R 9878060 intron,intron Glut4EF +,CR45029 - chr3R 9878118 intron,intron Glut4EF +,CR45029 - chr3R_11_9875001 chr3R_9875001 RAL-340_100b 2739 chr3R 9898764 9898818 chr3R 9898881 9898933 22 113 6.5 5.5 6.0 3.1 169 chr3R 9898764 intron Glut4EF + chr3R 9898848 intron Glut4EF + chr3R 9898933 intron Glut4EF + chr3R_22_9895001 chr3R_9895001 RAL-340_100b 2740 chr3R 10036228 10036277 chr3R 10036607 10036623 23 371 15.0 3.0 9.0 2.3 395 chr3R 10036228 intron Mical - chr3R 10036426 intron Mical - chr3R 10036623 intron Mical - chr3R_23_10035001 chr3R_10035001 RAL-340_100b 2741 chr3R 10073764 10073801 chr3R 10073881 10073935 8 129 4.5 5.5 5.0 1.3 171 chr3R 10073764 intergenic nerfin-2 +,CG5361 - chr3R 10073850 3` UTR CG5361 - chr3R 10073935 exon CG5361 - chr3R_8_10070001 chr3R_10070001 RAL-340_100b 2742 chr3R 10139514 10139565 chr3R 10139730 10139781 26 213 5.5 7.0 6.2 3.6 267 chr3R 10139514 5` UTR tws - chr3R 10139648 5` UTR tws - chr3R 10139781 intergenic tws -,TAF1B - chr3R_26_10135001 chr3R_10135001 RAL-340_100b 2743 chr3R 10231759 10231768 chr3R 10237361 10237370 mdg3 4 5602 17.0 7.0 12.0 0.3 5611 chr3R 10231759 intron CG42795 + chr3R 10234564 intron CG42795 + chr3R 10237370 intron CG42795 + chr3R_4_10230001 chr3R_10230001 RAL-340_100b 2744 chr3R 10231773 10231814 chr3R 10237360 10237416 mdg3 11 5599 7.0 6.5 6.8 1.4 5643 chr3R 10231773 intron CG42795 + chr3R 10234594 intron CG42795 + chr3R 10237416 intron CG42795 + chr3R_11_10230001 chr3R_10230001 RAL-340_100b 2745 chr3R 10255368 10255385 chr3R 10260823 10260850 I-element 8 5464 9.5 5.5 7.5 0.9 5482 chr3R 10255368 3` UTR Sirt6 - chr3R 10258109 intron Sirt6 - chr3R 10260850 exon Sirt6 - chr3R_8_10255001 chr3R_10255001 RAL-340_100b 2746 chr3R 10403007 10403060 chr3R 10403113 10403166 10 105 6.0 2.0 4.0 2.0 159 chr3R 10403007 3` UTR CG6325 - chr3R 10403086 3` UTR CG6325 - chr3R 10403166 3` UTR CG6325 - chr3R_10_10400001 chr3R_10400001 RAL-340_100b 2747 chr3R 6090419 6090423 chr3R 10451877 10451877 31 4361457 28.0 54.0 41.0 0.7 4361458 chr3R 6090419 intron Gasp - chr3R 8271148 intergenic not near genes chr3R 10451877 intergenic not near genes chr3R_31_8270001 chr3R_8270001 RAL-340_100b 2748 chr3R 10451877 10451877 chr3R 12722495 12722496 7 2270619 53.0 14.5 33.8 0.2 2270619 chr3R 10451877 intergenic not near genes chr3R 11587186 exon CG6791 - chr3R 12722496 intergenic Men - chr3R_7_11585001 chr3R_11585001 RAL-340_100b 2749 chr3R 10491153 10491161 chr3R 21907535 21907535 4 11416379 85.5 59.0 72.2 0.1 11416382 chr3R 10491153 intergenic not near genes chr3R 16199344 exon CG6126 - chr3R 21907535 intergenic CG6678 + chr3R_4_16195001 chr3R_16195001 RAL-340_100b 2750 chr3R 10593427 10593449 chr3R 10593519 10593559 17 100 16.5 12.0 14.2 1.1 132 chr3R 10593427 intron hth - chr3R 10593493 intron hth - chr3R 10593559 exon hth - chr3R_17_10590001 chr3R_10590001 RAL-340_100b 2751 chr3R 10593450 10593453 chr3R 10593515 10593562 10 92 15.0 10.0 12.5 0.7 112 chr3R 10593450 intron hth - chr3R 10593506 intron hth - chr3R 10593562 exon hth - chr3R_10_10590001 chr3R_10590001 RAL-340_100b 2752 chr3R 10593454 10593462 chr3R 10593514 10593572 11 97 10.5 9.5 10.0 1.0 118 chr3R 10593454 intron hth - chr3R 10593513 intron hth - chr3R 10593572 exon hth - chr3R_11_10590001 chr3R_10590001 RAL-340_100b 2753 chr3R 10641567 10641619 chr3R 10641672 10641692 16 98 9.0 8.5 8.8 1.6 125 chr3R 10641567 5` UTR CR44018 + chr3R 10641630 5` UTR CR44018 + chr3R 10641692 5` UTR CR44018 + chr3R_16_10640001 chr3R_10640001 RAL-340_100b 2754 chr3R 10716404 10716458 chr3R 10716577 10716631 26 172 9.5 9.0 9.2 2.5 227 chr3R 10716404 intergenic not near genes chr3R 10716518 intergenic not near genes chr3R 10716631 intergenic not near genes chr3R_26_10715001 chr3R_10715001 RAL-340_100b 2755 chr3R 10723475 10723531 chr3R 10723584 10723634 15 104 10.5 5.0 7.8 1.7 159 chr3R 10723475 intergenic not near genes chr3R 10723554 intergenic not near genes chr3R 10723634 intergenic not near genes chr3R_15_10720001 chr3R_10720001 RAL-340_100b 2756 chr3R 10745404 10745436 chr3R 10745516 10745547 10 109 8.0 8.0 8.0 1.1 143 chr3R 10745404 intron TkR86C - chr3R 10745476 intron TkR86C - chr3R 10745547 intron TkR86C - chr3R_10_10745001 chr3R_10745001 RAL-340_100b 2757 chr3R 10804169 10804196 chr3R 10811726 10811752 17.6 10 7556 11.0 6.0 8.5 1.1 7583 chr3R 10804169 intergenic CG14692 - chr3R 10807960 intergenic not near genes chr3R 10811752 3` UTR CG14693 - chr3R_10_10805001 chr3R_10805001 RAL-340_100b 2758 chr3R 10804198 10804207 chr3R 10811704 10811733 17.6 4 7536 7.5 4.0 5.8 0.6 7535 chr3R 10804198 intergenic CG14692 - chr3R 10807966 intergenic not near genes chr3R 10811733 3` UTR CG14693 - chr3R_4_10805001 chr3R_10805001 RAL-340_100b 2759 chr3R 10868594 10868602 chr3R 10868671 10868671 5 83 10.5 3.5 7.0 0.6 77 chr3R 10868594 5` UTR SelR - chr3R 10868632 5` UTR SelR - chr3R 10868671 intergenic SelR -,Tsp86D + chr3R_5_10865001 chr3R_10865001 RAL-340_100b 2760 chr3R 10919676 10919718 chr3R 10919763 10919821 11 100 5.5 3.5 4.5 2.0 145 chr3R 10919676 intergenic not near genes chr3R 10919748 intergenic not near genes chr3R 10919821 intergenic not near genes chr3R_11_10915001 chr3R_10915001 RAL-340_100b 2761 chr3R 10920034 10920039 chr3R 10920132 10920142 5 102 19.5 17.5 18.5 0.3 108 chr3R 10920034 intergenic not near genes chr3R 10920088 intergenic not near genes chr3R 10920142 intergenic not near genes chr3R_5_10920001 chr3R_10920001 RAL-340_100b 2762 chr3R 10920041 10920060 chr3R 10920128 10920163 13 98 16.5 16.5 16.5 0.7 122 chr3R 10920041 intergenic not near genes chr3R 10920102 intergenic not near genes chr3R 10920163 intergenic not near genes chr3R_13_10920001 chr3R_10920001 RAL-340_100b 2763 chr3R 10957854 10957885 chr3R 10963256 10963298 Rt1c 7 5409 7.5 9.5 8.5 0.7 5444 chr3R 10957854 intergenic not near genes chr3R 10960576 intergenic not near genes chr3R 10963298 intergenic not near genes chr3R_7_10960001 chr3R_10960001 RAL-340_100b 2764 chr3R 10979646 10979686 chr3R 10979736 10979793 16 100 3.5 13.0 8.2 1.7 147 chr3R 10979646 intron CG34114 + chr3R 10979720 intron CG34114 + chr3R 10979793 intron CG34114 + chr3R_16_10975001 chr3R_10975001 RAL-340_100b 2765 chr3R 10994260 10994309 chr3R 10994363 10994366 24 100 7.0 9.0 8.0 2.7 106 chr3R 10994260 intron CG34114 + chr3R 10994313 intron CG34114 + chr3R 10994366 intron CG34114 + chr3R_24_10990001 chr3R_10990001 RAL-340_100b 2766 chr3R 11024158 11024209 chr3R 11024279 11024324 30 117 8.0 8.0 8.0 3.3 166 chr3R 11024158 intron CG34114 + chr3R 11024241 intron CG34114 + chr3R 11024324 intron CG34114 + chr3R_30_11020001 chr3R_11020001 RAL-340_100b 2767 chr3R 11056883 11056894 chr3R 11056986 11056997 4 103 9.0 0.0 4.5 0.7 114 chr3R 11056883 intergenic not near genes chr3R 11056940 intergenic not near genes chr3R 11056997 intergenic not near genes chr3R_4_11055001 chr3R_11055001 RAL-340_100b 2768 chr3R 11085456 11085470 chr3R 11085558 11085572 6 102 2.0 9.0 5.5 0.9 116 chr3R 11085456 3` UTR CR44940 - chr3R 11085514 intergenic CR44940 - chr3R 11085572 intergenic CR44940 - chr3R_6_11085001 chr3R_11085001 RAL-340_100b 2769 chr3R 11102301 11102310 chr3R 11102407 11102416 7 105 26.0 22.0 24.0 0.3 115 chr3R 11102301 intergenic not near genes chr3R 11102358 intergenic not near genes chr3R 11102416 intergenic not near genes chr3R_7_11100001 chr3R_11100001 RAL-340_100b 2770 chr3R 11102312 11102353 chr3R 11102403 11102439 28 97 12.5 22.0 17.2 1.5 127 chr3R 11102312 intergenic not near genes chr3R 11102376 intergenic not near genes chr3R 11102439 intergenic not near genes chr3R_28_11100001 chr3R_11100001 RAL-340_100b 2771 chr3R 11103148 11103155 chr3R 11103254 11103262 7 107 0.0 0.0 0.0 7.0 114 chr3R 11103148 intergenic not near genes chr3R 11103205 intergenic not near genes chr3R 11103262 intergenic not near genes chr3R_7_11100001 chr3R_11100001 RAL-340_100b 2772 chr3R 11155017 11155048 chr3R 11155120 11155151 8 102 10.0 5.5 7.8 0.9 134 chr3R 11155017 intron Ugt86Dc + chr3R 11155084 intron Ugt86Dc + chr3R 11155151 intron Ugt86Dc + chr3R_8_11155001 chr3R_11155001 RAL-340_100b 2773 chr3R 11155059 11155070 chr3R 11155129 11155173 7 98 7.0 9.5 8.2 0.8 114 chr3R 11155059 intron Ugt86Dc + chr3R 11155116 intron Ugt86Dc + chr3R 11155173 intron Ugt86Dc + chr3R_7_11155001 chr3R_11155001 RAL-340_100b 2774 chr3R 11174568 11174614 chr3R 11175307 11175353 8 738 28.0 34.0 31.0 0.2 785 chr3R 11174568 exon Ugt86Dj - chr3R 11174960 intron Ugt86Dj - chr3R 11175353 exon Ugt86Dj - chr3R_8_11170001 chr3R_11170001 RAL-340_100b 2775 chr3R 11192275 11192299 chr3R 11192947 11192964 12 671 10.5 6.5 8.5 1.3 689 chr3R 11192275 intergenic not near genes chr3R 11192620 intergenic not near genes chr3R 11192964 intergenic not near genes chr3R_12_11190001 chr3R_11190001 RAL-340_100b 2776 chr3R 11192300 11192316 chr3R 11192936 11192988 16 662 6.0 4.0 5.0 2.7 688 chr3R 11192300 intergenic not near genes chr3R 11192644 intergenic not near genes chr3R 11192988 intergenic not near genes chr3R_16_11190001 chr3R_11190001 RAL-340_100b 2777 chr3R 11247218 11247227 chr3R 11247324 11247332 INE-1 11 106 23.0 5.5 14.2 0.7 114 chr3R 11247218 intergenic CG5214 +,CR43283 - chr3R 11247275 intergenic CR43283 -,CG5214 + chr3R 11247332 intergenic CR43283 -,CG5214 + chr3R_11_11245001 chr3R_11245001 RAL-340_100b 2778 chr3R 11265909 11265921 chr3R 11266018 11266030 5 108 12.0 27.5 19.8 0.2 121 chr3R 11265909 intergenic not near genes chr3R 11265970 intergenic not near genes chr3R 11266030 intergenic not near genes chr3R_5_11265001 chr3R_11265001 RAL-340_100b 2779 chr3R 11269426 11269479 chr3R 11269576 11269629 12 149 2.5 4.5 3.5 2.7 203 chr3R 11269426 3` UTR CR31386 - chr3R 11269528 3` UTR CR31386 - chr3R 11269629 3` UTR CR31386 - chr3R_12_11265001 chr3R_11265001 RAL-340_100b 2780 chr3R 11313206 11313215 chr3R 11313320 11313329 7 114 39.0 8.5 23.8 0.3 123 chr3R 11313206 intergenic not near genes chr3R 11313268 intergenic not near genes chr3R 11313329 intergenic not near genes chr3R_7_11310001 chr3R_11310001 RAL-340_100b 2781 chr3R 11313217 11313221 chr3R 11313319 11313335 6 110 37.5 8.5 23.0 0.2 118 chr3R 11313217 intergenic not near genes chr3R 11313276 intergenic not near genes chr3R 11313335 intergenic not near genes chr3R_6_11310001 chr3R_11310001 RAL-340_100b 2782 chr3R 11313226 11313243 chr3R 11313324 11313354 21 109 20.0 9.5 14.8 1.3 128 chr3R 11313226 intergenic not near genes chr3R 11313290 intergenic not near genes chr3R 11313354 intergenic not near genes chr3R_21_11310001 chr3R_11310001 RAL-340_100b 2783 chr3R 11313247 11313261 chr3R 11313319 11313375 18 101 14.5 8.5 11.5 1.4 128 chr3R 11313247 intergenic not near genes chr3R 11313311 intergenic not near genes chr3R 11313375 intergenic not near genes chr3R_18_11310001 chr3R_11310001 RAL-340_100b 2784 chr3R 11342517 11342545 chr3R 11342618 11342646 14 100 10.0 9.5 9.8 1.3 129 chr3R 11342517 intron pros + chr3R 11342582 intron pros + chr3R 11342646 intron pros + chr3R_14_11340001 chr3R_11340001 RAL-340_100b 2785 chr3R 11342551 11342574 chr3R 11342617 11342675 14 96 5.5 9.0 7.2 1.7 124 chr3R 11342551 intron pros + chr3R 11342613 intron pros + chr3R 11342675 intron pros + chr3R_14_11340001 chr3R_11340001 RAL-340_100b 2786 chr3R 11342886 11342901 chr3R 11343002 11343022 7 116 12.5 22.0 17.2 0.4 136 chr3R 11342886 intron pros + chr3R 11342954 intron pros + chr3R 11343022 intron pros + chr3R_7_11340001 chr3R_11340001 RAL-340_100b 2787 chr3R 11379212 11379261 chr3R 11388392 11388430 roo 42 9179 31.0 12.5 21.8 1.8 9218 chr3R 11379212 intron pros + chr3R 11383821 intron pros + chr3R 11388430 intron pros + chr3R_42_11380001 chr3R_11380001 RAL-340_100b 2788 chr3R 11452052 11452103 chr3R 11452164 11452215 36 104 8.0 10.5 9.2 3.5 163 chr3R 11452052 intron CG17230 + chr3R 11452134 intron CG17230 + chr3R 11452215 intron CG17230 + chr3R_36_11450001 chr3R_11450001 RAL-340_100b 2789 chr3R 11455561 11455612 chr3R 11455712 11455763 27 146 11.5 9.0 10.2 2.4 202 chr3R 11455561 intron,intron CG17230 +,PGRP-LB - chr3R 11455662 intron,intron CG17230 +,PGRP-LB - chr3R 11455763 intron,intron CG17230 +,PGRP-LB - chr3R_27_11455001 chr3R_11455001 RAL-340_100b 2790 chr3R 11483420 11483485 chr3R 11483530 11483587 15 99 3.0 7.5 5.2 2.4 167 chr3R 11483420 intergenic not near genes chr3R 11483504 intergenic not near genes chr3R 11483587 intergenic not near genes chr3R_15_11480001 chr3R_11480001 RAL-340_100b 2791 chr3R 11664772 11664813 chr3R 11664889 11664922 21 112 7.5 12.0 9.8 1.9 150 chr3R 11664772 intron CG42327 + chr3R 11664847 intron CG42327 + chr3R 11664922 intron CG42327 + chr3R_21_11660001 chr3R_11660001 RAL-340_100b 2792 chr3R 11694709 11694742 chr3R 11694825 11694840 10 114 6.0 11.0 8.5 1.1 131 chr3R 11694709 intergenic Fer3 - chr3R 11694774 intergenic Fer3 - chr3R 11694840 intergenic not near genes chr3R_10_11690001 chr3R_11690001 RAL-340_100b 2793 chr3R 11708611 11708663 chr3R 11708841 11708891 15 230 8.5 2.0 5.2 2.4 280 chr3R 11708611 intergenic not near genes chr3R 11708751 intergenic not near genes chr3R 11708891 intergenic not near genes chr3R_15_11705001 chr3R_11705001 RAL-340_100b 2794 chr3R 11713467 11713521 chr3R 11713572 11713626 22 103 9.0 2.0 5.5 3.4 159 chr3R 11713467 intergenic not near genes chr3R 11713546 intergenic not near genes chr3R 11713626 intergenic not near genes chr3R_22_11710001 chr3R_11710001 RAL-340_100b 2795 chr3R 11728148 11728205 chr3R 11728258 11728274 11 101 3.0 6.5 4.8 1.9 126 chr3R 11728148 intron CG12594 + chr3R 11728211 intron CG12594 + chr3R 11728274 intron CG12594 + chr3R_11_11725001 chr3R_11725001 RAL-340_100b 2796 chr3R 11734136 11734188 chr3R 11734280 11734312 28 139 8.5 11.0 9.8 2.6 176 chr3R 11734136 intergenic not near genes chr3R 11734224 intergenic not near genes chr3R 11734312 intergenic not near genes chr3R_28_11730001 chr3R_11730001 RAL-340_100b 2797 chr3R 11830328 11830357 chr3R 11830436 11830459 13 107 12.5 8.0 10.2 1.2 131 chr3R 11830328 intron CG6959 - chr3R 11830394 intron CG6959 - chr3R 11830459 intron CG6959 - chr3R_13_11830001 chr3R_11830001 RAL-340_100b 2798 chr3R 11841038 11841047 chr3R 11846254 11846263 BS 4 5216 27.0 9.5 18.2 0.2 5225 chr3R 11841038 intron CG6959 - chr3R 11843650 intron CG6959 - chr3R 11846263 intron CG6959 - chr3R_4_11840001 chr3R_11840001 RAL-340_100b 2799 chr3R 11841050 11841093 chr3R 11846250 11846284 BS 20 5210 8.5 9.5 9.0 2.0 5234 chr3R 11841050 intron CG6959 - chr3R 11843667 intron CG6959 - chr3R 11846284 intron CG6959 - chr3R_20_11840001 chr3R_11840001 RAL-340_100b 2800 chr3R 11853421 11853471 chr3R 11853595 11853633 16 165 1.0 4.0 2.5 4.6 212 chr3R 11853421 intron CG6959 - chr3R 11853527 intron CG6959 - chr3R 11853633 intron CG6959 - chr3R_16_11850001 chr3R_11850001 RAL-340_100b 2801 chr3R 11853747 11853801 chr3R 11853877 11853931 33 127 3.5 5.0 4.2 6.3 184 chr3R 11853747 intron CG6959 - chr3R 11853839 intron CG6959 - chr3R 11853931 intron CG6959 - chr3R_33_11850001 chr3R_11850001 RAL-340_100b 2802 chr3R 11908896 11908943 chr3R 21907535 21907535 4 9998624 51.0 59.0 55.0 0.1 9998639 chr3R 11908896 intron Cad87A - chr3R 16908216 intron iab-8 - chr3R 21907535 intergenic CG6678 + chr3R_4_16905001 chr3R_16905001 RAL-340_100b 2803 chr3R 11909341 11909387 chr3R 11909440 11909469 16 94 6.0 5.5 5.8 2.4 128 chr3R 11909341 intron Cad87A - chr3R 11909405 intron Cad87A - chr3R 11909469 intron Cad87A - chr3R_16_11905001 chr3R_11905001 RAL-340_100b 2804 chr3R 11957832 11957877 chr3R 11958138 11958169 S-element 20 300 8.0 1.0 4.5 3.6 337 chr3R 11957832 intergenic not near genes chr3R 11958000 intergenic not near genes chr3R 11958169 intergenic not near genes chr3R_20_11955001 chr3R_11955001 RAL-340_100b 2805 chr3R 12022858 12022915 chr3R 12025060 12025117 pogo 20 2201 4.0 12.0 8.0 2.2 2259 chr3R 12022858 intergenic not near genes chr3R 12023988 intergenic not near genes chr3R 12025117 intergenic not near genes chr3R_20_12020001 chr3R_12020001 RAL-340_100b 2806 chr3R 12039121 12039167 chr3R 12039345 12039374 12 226 5.5 6.0 5.8 1.8 253 chr3R 12039121 intergenic not near genes chr3R 12039248 intergenic not near genes chr3R 12039374 intergenic not near genes chr3R_12_12035001 chr3R_12035001 RAL-340_100b 2807 chr3R 12040264 12040312 chr3R 12040368 12040421 21 104 6.0 14.0 10.0 1.9 157 chr3R 12040264 intergenic CG14736 + chr3R 12040342 intergenic CG14736 + chr3R 12040421 intergenic CG14736 + chr3R_21_12040001 chr3R_12040001 RAL-340_100b 2808 chr3R 12080840 12080898 chr3R 12080942 12081001 31 99 13.0 6.5 9.8 2.9 161 chr3R 12080840 intron CG14741 - chr3R 12080920 intron CG14741 - chr3R 12081001 intron CG14741 - chr3R_31_12080001 chr3R_12080001 RAL-340_100b 2809 chr3R 12097235 12097276 chr3R 12097364 12097404 21 128 2.5 7.5 5.0 3.5 169 chr3R 12097235 intron dpr17 + chr3R 12097320 intron dpr17 + chr3R 12097404 intron dpr17 + chr3R_21_12095001 chr3R_12095001 RAL-340_100b 2810 chr3R 12102857 12102876 chr3R 12102977 12102996 10 119 14.0 16.5 15.2 0.6 139 chr3R 12102857 intron dpr17 + chr3R 12102926 intron dpr17 + chr3R 12102996 intron dpr17 + chr3R_10_12100001 chr3R_12100001 RAL-340_100b 2811 chr3R 12116757 12116776 chr3R 21907534 21907535 4 9790768 94.0 58.5 76.2 0.1 9790778 chr3R 12116757 intergenic not near genes chr3R 17012146 exon CG8907 + chr3R 21907535 intergenic CG6678 + chr3R_4_17010001 chr3R_17010001 RAL-340_100b 2812 chr3R 12130828 12130831 chr3R 24886323 24886323 4 12755494 18.0 41.0 29.5 0.1 12755495 chr3R 12130828 intergenic not near genes chr3R 18508576 intron fru - chr3R 24886323 intron CG31121 - chr3R_4_18505001 chr3R_18505001 RAL-340_100b 2813 chr3R 12214363 12214369 chr3R 12214439 12214485 7 101 12.5 13.5 13.0 0.5 122 chr3R 12214363 3` UTR CG4848 - chr3R 12214424 3` UTR CG4848 - chr3R 12214485 3` UTR CG4848 - chr3R_7_12210001 chr3R_12210001 RAL-340_100b 2814 chr3R 12290299 12290316 chr3R 12290401 12290420 8 104 20.0 12.0 16.0 0.5 121 chr3R 12290299 5` UTR svp + chr3R 12290360 intron svp + chr3R 12290420 intron svp + chr3R_8_12290001 chr3R_12290001 RAL-340_100b 2815 chr3R 12290317 12290341 chr3R 12290399 12290445 19 99 12.0 11.5 11.8 1.5 128 chr3R 12290317 5` UTR svp + chr3R 12290381 intron svp + chr3R 12290445 intron svp + chr3R_19_12290001 chr3R_12290001 RAL-340_100b 2816 chr3R 12344105 12344140 chr3R 12344207 12344241 15 101 13.5 5.5 9.5 1.4 136 chr3R 12344105 intergenic not near genes chr3R 12344173 intergenic not near genes chr3R 12344241 intergenic not near genes chr3R_15_12340001 chr3R_12340001 RAL-340_100b 2817 chr3R 12344154 12344158 chr3R 12344231 12344260 5 94 9.5 8.5 9.0 0.5 106 chr3R 12344154 intergenic not near genes chr3R 12344207 intergenic not near genes chr3R 12344260 intergenic not near genes chr3R_5_12340001 chr3R_12340001 RAL-340_100b 2818 chr3R 12359054 12359111 chr3R 12359215 12359243 18 156 6.0 5.5 5.8 2.6 189 chr3R 12359054 intergenic not near genes chr3R 12359148 intergenic not near genes chr3R 12359243 intergenic not near genes chr3R_18_12355001 chr3R_12355001 RAL-340_100b 2819 chr3R 12369399 12369420 chr3R 12371879 12371900 13 2483 96.5 66.0 81.2 0.2 2501 chr3R 12369399 intergenic GstD1 - chr3R 12370650 intergenic not near genes chr3R 12371900 intergenic GstD2 + chr3R_13_12370001 chr3R_12370001 RAL-340_100b 2820 chr3R 12392871 12392874 chr3R 12392996 12392999 4 125 10.5 10.0 10.2 0.4 128 chr3R 12392871 intron,5` UTR,3` UTR CG34402 +,CG10096 -,CG10097 - chr3R 12392935 intron,5` UTR,3` UTR CG34402 +,CG10096 -,CG10097 - chr3R 12392999 intron,5` UTR,3` UTR CG34402 +,CG10096 -,CG10097 - chr3R_4_12390001 chr3R_12390001 RAL-340_100b 2821 chr3R 12392879 12392892 chr3R 12392991 12393006 8 120 6.0 9.0 7.5 0.9 127 chr3R 12392879 intron,5` UTR,3` UTR CG34402 +,CG10096 -,CG10097 - chr3R 12392942 intron,5` UTR,3` UTR CG34402 +,CG10096 -,CG10097 - chr3R 12393006 intron,5` UTR,3` UTR CG34402 +,CG10096 -,CG10097 - chr3R_8_12390001 chr3R_12390001 RAL-340_100b 2822 chr3R 12538155 12538211 chr3R 12538259 12538314 27 98 5.0 8.5 6.8 3.5 159 chr3R 12538155 intron Octbeta3R - chr3R 12538234 intron Octbeta3R - chr3R 12538314 intron Octbeta3R - chr3R_27_12535001 chr3R_12535001 RAL-340_100b 2823 chr3R 12569951 12569981 chr3R 12570032 12570045 7 86 5.5 5.0 5.2 1.1 94 chr3R 12569951 intron Octbeta2R - chr3R 12569998 intron Octbeta2R - chr3R 12570045 intron Octbeta2R - chr3R_7_12570001 chr3R_12570001 RAL-340_100b 2824 chr3R 12585729 12585779 chr3R 12585834 12585884 21 103 6.0 4.5 5.2 3.4 155 chr3R 12585729 intron Octbeta2R - chr3R 12585806 intron Octbeta2R - chr3R 12585884 intron Octbeta2R - chr3R_21_12585001 chr3R_12585001 RAL-340_100b 2825 chr3R 12720788 12720815 chr3R 12720986 12721013 13 196 17.0 6.0 11.5 1.0 225 chr3R 12720788 intron Men - chr3R 12720900 intron Men - chr3R 12721013 intron Men - chr3R_13_12720001 chr3R_12720001 RAL-340_100b 2826 chr3R 12720816 12720840 chr3R 12720985 12721038 20 188 7.0 5.5 6.2 2.8 222 chr3R 12720816 intron Men - chr3R 12720927 intron Men - chr3R 12721038 intron Men - chr3R_20_12720001 chr3R_12720001 RAL-340_100b 2827 chr3R 10451877 10451879 chr3R 12722455 12722496 5 2270610 54.0 27.0 40.5 0.1 2270619 chr3R 10451877 intergenic not near genes chr3R 11587186 exon CG6791 - chr3R 12722496 intergenic Men - chr3R_5_11585001 chr3R_11585001 RAL-340_100b 2828 chr3R 12735155 12735181 chr3R 12735430 12735456 8 275 11.0 9.0 10.0 0.7 301 chr3R 12735155 intergenic not near genes chr3R 12735306 intergenic not near genes chr3R 12735456 intergenic not near genes chr3R_8_12735001 chr3R_12735001 RAL-340_100b 2829 chr3R 12763115 12763147 chr3R 12763212 12763249 15 100 1.0 6.0 3.5 3.3 134 chr3R 12763115 intron beat-Vc - chr3R 12763182 intron beat-Vc - chr3R 12763249 intron beat-Vc - chr3R_15_12760001 chr3R_12760001 RAL-340_100b 2830 chr3R 12787925 12787955 chr3R 12788033 12788053 14 105 2.0 12.5 7.2 1.7 128 chr3R 12787925 intergenic not near genes chr3R 12787989 intergenic not near genes chr3R 12788053 intergenic not near genes chr3R_14_12785001 chr3R_12785001 RAL-340_100b 2831 chr3R 12836322 12836371 chr3R 12836424 12836470 20 96 11.0 9.0 10.0 1.8 148 chr3R 12836322 intergenic not near genes chr3R 12836396 intergenic not near genes chr3R 12836470 intergenic not near genes chr3R_20_12835001 chr3R_12835001 RAL-340_100b 2832 chr3R 12864587 12864592 chr3R 12865097 12865102 roo 4 510 0.0 5.0 2.5 1.1 515 chr3R 12864587 intergenic not near genes chr3R 12864844 intergenic not near genes chr3R 12865102 intergenic not near genes chr3R_4_12860001 chr3R_12860001 RAL-340_100b 2833 chr3R 12866464 12866471 chr3R 12866640 12866647 6 176 15.5 5.0 10.2 0.5 183 chr3R 12866464 intergenic not near genes chr3R 12866556 intergenic not near genes chr3R 12866647 intergenic not near genes chr3R_6_12865001 chr3R_12865001 RAL-340_100b 2834 chr3R 12866472 12866517 chr3R 12866638 12866693 23 174 5.5 5.0 5.2 3.7 221 chr3R 12866472 intergenic not near genes chr3R 12866582 intergenic not near genes chr3R 12866693 intergenic not near genes chr3R_23_12865001 chr3R_12865001 RAL-340_100b 2835 chr3R 12920129 12920174 chr3R 12925357 12925402 copia 16 5222 5.5 9.5 7.5 1.9 5273 chr3R 12920129 intron beat-Vb + chr3R 12922766 intron beat-Vb + chr3R 12925402 intron beat-Vb + chr3R_16_12920001 chr3R_12920001 RAL-340_100b 2836 chr3R 12953179 12953202 chr3R 12953568 12953591 7 389 10.5 7.5 9.0 0.7 412 chr3R 12953179 intron grsm - chr3R 12953385 intron grsm - chr3R 12953591 intron grsm - chr3R_7_12950001 chr3R_12950001 RAL-340_100b 2837 chr3R 12953203 12953235 chr3R 12953567 12953624 15 383 4.5 7.5 6.0 2.1 421 chr3R 12953203 intron grsm - chr3R 12953414 intron grsm - chr3R 12953624 intron grsm - chr3R_15_12950001 chr3R_12950001 RAL-340_100b 2838 chr3R 12972530 12972579 chr3R 12972694 12972743 17 161 5.5 9.5 7.5 2.0 213 chr3R 12972530 intron CG7381 - chr3R 12972636 intron CG7381 - chr3R 12972743 intron CG7381 - chr3R_17_12970001 chr3R_12970001 RAL-340_100b 2839 chr3R 12998091 12998099 chr3R 30529755 30529770 mdg1 4 17531670 44.0 37.5 40.8 0.1 17531679 chr3R 12998091 5` UTR CG7518 + chr3R 21763930 intron CG42335 + chr3R 30529770 intron CR45552 - chr3R_4_21760001 chr3R_21760001 RAL-340_100b 2840 chr3R 13015870 13015896 chr3R 21907534 21907535 4 8891657 126.0 58.5 92.2 0.0 8891665 chr3R 13015870 intron CtBP + chr3R 17461702 intergenic not near genes chr3R 21907535 intergenic CG6678 + chr3R_4_17460001 chr3R_17460001 RAL-340_100b 2841 chr3R 13059948 13059951 chr3R 13060161 13060171 4 218 9.5 4.0 6.8 0.5 223 chr3R 13059948 intron sim + chr3R 13060060 intron sim + chr3R 13060171 intron sim + chr3R_4_13060001 chr3R_13060001 RAL-340_100b 2842 chr3R 13059954 13059966 chr3R 13060159 13060186 7 217 5.5 4.0 4.8 1.2 232 chr3R 13059954 intron sim + chr3R 13060070 intron sim + chr3R 13060186 intron sim + chr3R_7_13060001 chr3R_13060001 RAL-340_100b 2843 chr3R 13061858 13061907 chr3R 13061978 13062009 16 116 5.5 4.5 5.0 2.7 151 chr3R 13061858 intron sim + chr3R 13061934 intron sim + chr3R 13062009 intron sim + chr3R_16_13060001 chr3R_13060001 RAL-340_100b 2844 chr3R 13064108 13064126 chr3R 21907534 21907534 5 8843418 169.0 58.5 113.8 0.0 8843426 chr3R 13064108 intron sim + chr3R 17485821 intron Dscam3 - chr3R 21907534 intergenic CG6678 + chr3R_5_17485001 chr3R_17485001 RAL-340_100b 2845 chr3R 13066979 13067009 chr3R 13067091 13067121 7 110 8.5 5.5 7.0 0.9 142 chr3R 13066979 intron sim + chr3R 13067050 intron sim + chr3R 13067121 intron sim + chr3R_7_13065001 chr3R_13065001 RAL-340_100b 2846 chr3R 13084948 13084961 chr3R 13085057 13085077 8 113 8.0 14.5 11.2 0.7 129 chr3R 13084948 intergenic not near genes chr3R 13085012 intergenic CR44967 + chr3R 13085077 intergenic CR44967 + chr3R_8_13085001 chr3R_13085001 RAL-340_100b 2847 chr3R 13084962 13084966 chr3R 13085078 13085082 5 116 7.5 20.0 13.8 0.3 120 chr3R 13084962 intergenic not near genes chr3R 13085022 intergenic CR44967 + chr3R 13085082 intergenic CR44967 + chr3R_5_13085001 chr3R_13085001 RAL-340_100b 2848 chr3R 13113405 13113411 chr3R 13113667 13113673 5 262 20.5 1.0 10.8 0.4 268 chr3R 13113405 intron timeout + chr3R 13113539 intron timeout + chr3R 13113673 intron timeout + chr3R_5_13110001 chr3R_13110001 RAL-340_100b 2849 chr3R 13113412 13113435 chr3R 13113663 13113671 7 249 12.5 1.0 6.8 0.9 259 chr3R 13113412 intron timeout + chr3R 13113542 intron timeout + chr3R 13113671 intron timeout + chr3R_7_13110001 chr3R_13110001 RAL-340_100b 2850 chr3R 13120745 13120759 chr3R 13120847 13120854 8 101 9.5 3.0 6.2 1.1 109 chr3R 13120745 intron timeout + chr3R 13120800 intron timeout + chr3R 13120854 intron timeout + chr3R_8_13120001 chr3R_13120001 RAL-340_100b 2851 chr3R 13120775 13120798 chr3R 13120857 13120891 6 88 6.0 5.5 5.8 0.9 116 chr3R 13120775 intron timeout + chr3R 13120833 intron timeout + chr3R 13120891 intron timeout + chr3R_6_13120001 chr3R_13120001 RAL-340_100b 2852 chr3R 13135805 13135857 chr3R 13138005 13138057 pogo 23 2199 14.0 9.0 11.5 1.8 2252 chr3R 13135805 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13136931 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13138057 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_23_13135001 chr3R_13135001 RAL-340_100b 2853 chr3R 13143007 13143049 chr3R 13148609 13148646 mdg3 23 5598 15.5 11.5 13.5 1.6 5639 chr3R 13143007 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13145826 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13148646 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_23_13145001 chr3R_13145001 RAL-340_100b 2854 chr3R 13143054 13143057 chr3R 13148640 13148659 mdg3 7 5596 14.0 21.5 17.8 0.4 5605 chr3R 13143054 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13145856 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13148659 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_7_13145001 chr3R_13145001 RAL-340_100b 2855 chr3R 7773344 7773344 chr3R 13217322 13217325 9 5443979 28.5 48.5 38.5 0.2 5443981 chr3R 7773344 intergenic not near genes chr3R 10495334 intergenic not near genes chr3R 13217325 intergenic not near genes chr3R_9_10495001 chr3R_10495001 RAL-340_100b 2856 chr3R 13219292 13219339 chr3R 13219413 13219460 21 118 2.0 5.5 3.8 4.4 168 chr3R 13219292 intergenic CG8476 - chr3R 13219376 intergenic CG8476 - chr3R 13219460 intergenic CG8476 - chr3R_21_13215001 chr3R_13215001 RAL-340_100b 2857 chr3R 13234885 13234924 chr3R 13235006 13235024 15 117 6.0 6.5 6.2 2.1 139 chr3R 13234885 intron Ace - chr3R 13234954 intron Ace - chr3R 13235024 intron Ace - chr3R_15_13230001 chr3R_13230001 RAL-340_100b 2858 chr3R 13237654 13237711 chr3R 13237765 13237787 25 100 7.5 7.5 7.5 2.9 133 chr3R 13237654 intron Ace - chr3R 13237720 intron Ace - chr3R 13237787 intron Ace - chr3R_25_13235001 chr3R_13235001 RAL-340_100b 2859 chr3R 13248629 13248634 chr3R 13248753 13248756 4 124 20.5 6.0 13.2 0.3 127 chr3R 13248629 intron Ace - chr3R 13248692 intron Ace - chr3R 13248756 intron Ace - chr3R_4_13245001 chr3R_13245001 RAL-340_100b 2860 chr3R 13248636 13248679 chr3R 13248750 13248803 25 122 7.0 6.0 6.5 3.3 167 chr3R 13248636 intron Ace - chr3R 13248720 intron Ace - chr3R 13248803 intron Ace - chr3R_25_13245001 chr3R_13245001 RAL-340_100b 2861 chr3R 13253400 13253409 chr3R 13253505 13253514 6 105 7.5 3.5 5.5 0.9 114 chr3R 13253400 intron Ace - chr3R 13253457 intron Ace - chr3R 13253514 intron Ace - chr3R_6_13250001 chr3R_13250001 RAL-340_100b 2862 chr3R 13272029 13272084 chr3R 13272139 13272194 13 110 4.0 2.0 3.0 3.2 165 chr3R 13272029 intergenic CG8449 - chr3R 13272112 intergenic CG8449 - chr3R 13272194 intergenic CG8449 - chr3R_13_13270001 chr3R_13270001 RAL-340_100b 2863 chr3R 13272348 13272407 chr3R 13272575 13272634 23 224 4.5 5.5 5.0 3.8 286 chr3R 13272348 intergenic CG8449 - chr3R 13272491 intergenic CG8449 - chr3R 13272634 intergenic not near genes chr3R_23_13270001 chr3R_13270001 RAL-340_100b 2864 chr3R 13274190 13274248 chr3R 13274291 13274296 22 98 7.5 5.5 6.5 2.9 106 chr3R 13274190 intergenic not near genes chr3R 13274243 intergenic not near genes chr3R 13274296 intergenic not near genes chr3R_22_13270001 chr3R_13270001 RAL-340_100b 2865 chr3R 13293992 13294019 chr3R 13294181 13294208 8 185 6.5 19.5 13.0 0.6 216 chr3R 13293992 intergenic not near genes chr3R 13294100 intergenic not near genes chr3R 13294208 intergenic not near genes chr3R_8_13290001 chr3R_13290001 RAL-340_100b 2866 chr3R 13294020 13294036 chr3R 13294174 13294225 8 182 4.5 17.0 10.8 0.7 205 chr3R 13294020 intergenic not near genes chr3R 13294122 intergenic not near genes chr3R 13294225 intergenic not near genes chr3R_8_13290001 chr3R_13290001 RAL-340_100b 2867 chr3R 13363213 13363253 chr3R 13363321 13363323 7 101 8.5 4.5 6.5 0.9 110 chr3R 13363213 intron poly - chr3R 13363268 intron poly - chr3R 13363323 intron poly - chr3R_7_13360001 chr3R_13360001 RAL-340_100b 2868 chr3R 13435168 13435194 chr3R 13435270 13435281 17 100 0.5 12.5 6.5 2.3 113 chr3R 13435168 intergenic yrt - chr3R 13435224 intergenic yrt - chr3R 13435281 intergenic yrt - chr3R_17_13435001 chr3R_13435001 RAL-340_100b 2869 chr3R 13439559 13439601 chr3R 13439667 13439709 12 107 8.5 7.0 7.8 1.4 150 chr3R 13439559 intergenic CR42756 - chr3R 13439634 intergenic CR42756 - chr3R 13439709 intergenic CR42756 - chr3R_12_13435001 chr3R_13435001 RAL-340_100b 2870 chr3R 13505844 13505867 chr3R 13505933 13505959 10 98 23.5 8.0 15.8 0.6 115 chr3R 13505844 intergenic not near genes chr3R 13505902 intergenic not near genes chr3R 13505959 intergenic not near genes chr3R_10_13505001 chr3R_13505001 RAL-340_100b 2871 chr3R 13517205 13517256 chr3R 13520047 13520098 jockey 9 2839 12.5 0.5 6.5 1.2 2893 chr3R 13517205 intergenic not near genes chr3R 13518652 intergenic not near genes chr3R 13520098 intergenic not near genes chr3R_9_13515001 chr3R_13515001 RAL-340_100b 2872 chr3R 13580824 13580828 chr3R 13580922 13580930 4 100 22.0 41.5 31.8 0.1 106 chr3R 13580824 intergenic not near genes chr3R 13580877 intergenic not near genes chr3R 13580930 intergenic not near genes chr3R_4_13580001 chr3R_13580001 RAL-340_100b 2873 chr3R 13603056 13603059 chr3R 13603172 13603175 4 116 10.0 18.5 14.2 0.3 119 chr3R 13603056 intergenic not near genes chr3R 13603116 intergenic not near genes chr3R 13603175 intergenic not near genes chr3R_4_13600001 chr3R_13600001 RAL-340_100b 2874 chr3R 13603060 13603076 chr3R 13603156 13603173 8 110 7.5 13.0 10.2 0.7 113 chr3R 13603060 intergenic not near genes chr3R 13603116 intergenic not near genes chr3R 13603173 intergenic not near genes chr3R_8_13600001 chr3R_13600001 RAL-340_100b 2875 chr3R 13625666 13625721 chr3R 13625772 13625827 11 105 7.0 2.5 4.8 1.9 161 chr3R 13625666 intergenic not near genes chr3R 13625746 intergenic not near genes chr3R 13625827 intergenic not near genes chr3R_11_13625001 chr3R_13625001 RAL-340_100b 2876 chr3R 13659712 13659714 chr3R 13659842 13659845 4 131 4.5 0.5 2.5 1.1 133 chr3R 13659712 intron Hrb87F - chr3R 13659778 intron Hrb87F - chr3R 13659845 intron Hrb87F - chr3R_4_13655001 chr3R_13655001 RAL-340_100b 2877 chr3R 13659718 13659740 chr3R 13659824 13659846 7 120 0.5 0.5 0.5 4.7 128 chr3R 13659718 intron Hrb87F - chr3R 13659782 intron Hrb87F - chr3R 13659846 intron Hrb87F - chr3R_7_13655001 chr3R_13655001 RAL-340_100b 2878 chr3R 13659825 13659828 chr3R 13659939 13659942 6 114 0.5 17.0 8.8 0.6 117 chr3R 13659825 intron Hrb87F - chr3R 13659884 intron Hrb87F - chr3R 13659942 intron Hrb87F - chr3R_6_13655001 chr3R_13655001 RAL-340_100b 2879 chr3R 13672922 13672972 chr3R 13673023 13673075 11 100 3.5 9.0 6.2 1.5 153 chr3R 13672922 intron Task6 - chr3R 13672998 intron Task6 - chr3R 13673075 intron Task6 - chr3R_11_13670001 chr3R_13670001 RAL-340_100b 2880 chr3R 13693024 13693027 chr3R 21907534 21907536 4 8214508 70.0 58.5 64.2 0.1 8214512 chr3R 13693024 3` UTR flfl + chr3R 17800280 exon CG17803 - chr3R 21907536 intergenic CG6678 + chr3R_4_17800001 chr3R_17800001 RAL-340_100b 2881 chr3R 13693028 13693028 chr3R 15286987 15286988 5 1593960 71.0 56.0 63.5 0.1 1593960 chr3R 13693028 3` UTR flfl + chr3R 14490008 intergenic not near genes chr3R 15286988 intron Tm1 + chr3R_5_14490001 chr3R_14490001 RAL-340_100b 2882 chr3R 13693028 13693028 chr3R 21907534 21907536 215 8214507 71.0 58.5 64.8 3.3 8214508 chr3R 13693028 3` UTR flfl + chr3R 17800282 exon CG17803 - chr3R 21907536 intergenic CG6678 + chr3R_215_17800001 chr3R_17800001 RAL-340_100b 2883 chr3R 13693028 13693028 chr3R 28831801 28831802 4 15138774 71.0 67.5 69.2 0.1 15138774 chr3R 13693028 3` UTR flfl + chr3R 21262415 intron ETHR + chr3R 28831802 intron WASp - chr3R_4_21260001 chr3R_21260001 RAL-340_100b 2884 chr3R 13714498 13714549 chr3R 13714662 13714713 19 160 1.5 9.5 5.5 2.9 215 chr3R 13714498 intergenic CR34044 - chr3R 13714606 intergenic CR34044 - chr3R 13714713 intergenic CG34383 + chr3R_19_13710001 chr3R_13710001 RAL-340_100b 2885 chr3R 13719474 13719487 chr3R 13719993 13720015 10 525 8.0 3.5 5.8 1.5 541 chr3R 13719474 intron CG34383 + chr3R 13719744 intron CG34383 + chr3R 13720015 intron CG34383 + chr3R_10_13715001 chr3R_13715001 RAL-340_100b 2886 chr3R 13758136 13758172 chr3R 13758247 13758283 10 111 0.0 7.5 3.8 2.1 147 chr3R 13758136 intron CG34383 + chr3R 13758210 intron CG34383 + chr3R 13758283 intron CG34383 + chr3R_10_13755001 chr3R_13755001 RAL-340_100b 2887 chr3R 13762478 13762511 chr3R 13762593 13762633 16 119 6.0 8.5 7.2 2.0 155 chr3R 13762478 intron CG34383 + chr3R 13762556 intron CG34383 + chr3R 13762633 intron CG34383 + chr3R_16_13760001 chr3R_13760001 RAL-340_100b 2888 chr3R 13803992 13804168 chr3R 13804258 13804283 5 206 0.0 7.5 3.8 1.0 291 chr3R 13803992 intergenic not near genes chr3R 13804138 intergenic not near genes chr3R 13804283 intergenic not near genes chr3R_5_13800001 chr3R_13800001 RAL-340_100b 2889 chr3R 13828820 13828873 chr3R 13828931 13828984 23 107 5.5 6.5 6.0 3.3 164 chr3R 13828820 intergenic CR43300 + chr3R 13828902 intergenic CR43300 + chr3R 13828984 intergenic not near genes chr3R_23_13825001 chr3R_13825001 RAL-340_100b 2890 chr3R 13830726 13830785 chr3R 13830915 13830974 22 186 10.0 6.5 8.2 2.4 248 chr3R 13830726 intergenic not near genes chr3R 13830850 intergenic not near genes chr3R 13830974 intergenic not near genes chr3R_22_13830001 chr3R_13830001 RAL-340_100b 2891 chr3R 13850296 13850342 chr3R 13850406 13850437 6 106 0.5 8.5 4.5 1.1 141 chr3R 13850296 intergenic not near genes chr3R 13850366 intergenic not near genes chr3R 13850437 intergenic not near genes chr3R_6_13850001 chr3R_13850001 RAL-340_100b 2892 chr3R 13891204 13891256 chr3R 13891309 13891360 18 103 6.5 9.0 7.8 2.0 156 chr3R 13891204 intergenic not near genes chr3R 13891282 intergenic not near genes chr3R 13891360 intergenic not near genes chr3R_18_13890001 chr3R_13890001 RAL-340_100b 2893 chr3R 13909895 13909909 chr3R 13909996 13910013 7 103 4.5 8.0 6.2 1.0 118 chr3R 13909895 intergenic not near genes chr3R 13909954 intergenic not near genes chr3R 13910013 intergenic not near genes chr3R_7_13905001 chr3R_13905001 RAL-340_100b 2894 chr3R 13935281 13935316 chr3R 13935384 13935387 11 91 10.0 21.5 15.8 0.7 106 chr3R 13935281 intergenic not near genes chr3R 13935334 intergenic not near genes chr3R 13935387 intergenic not near genes chr3R_11_13935001 chr3R_13935001 RAL-340_100b 2895 chr3R 13949493 13949541 chr3R 13949859 13949907 13 363 9.0 7.0 8.0 1.4 414 chr3R 13949493 3` UTR CG31517 + chr3R 13949700 3` UTR CG31517 + chr3R 13949907 intergenic CG31517 +,CG9926 - chr3R_13_13945001 chr3R_13945001 RAL-340_100b 2896 chr3R 13951040 13951077 chr3R 13951149 13951186 9 106 6.0 9.0 7.5 1.1 146 chr3R 13951040 exon CG9926 - chr3R 13951113 5` UTR CG9926 - chr3R 13951186 intergenic CG9926 - chr3R_9_13950001 chr3R_13950001 RAL-340_100b 2897 chr3R 13957352 13957391 chr3R 13957559 13957598 8 207 6.0 5.0 5.5 1.2 246 chr3R 13957352 intergenic not near genes chr3R 13957475 intergenic not near genes chr3R 13957598 intergenic not near genes chr3R_8_13955001 chr3R_13955001 RAL-340_100b 2898 chr3R 13974493 13974537 chr3R 13974595 13974639 6 102 1.5 12.0 6.8 0.8 146 chr3R 13974493 intron,5` UTR rdx -,CR43460 + chr3R 13974566 intron,5` UTR rdx -,CR43460 + chr3R 13974639 intron,5` UTR rdx -,CR43460 + chr3R_6_13970001 chr3R_13970001 RAL-340_100b 2899 chr3R 13975351 13975408 chr3R 13975456 13975513 24 102 12.0 10.0 11.0 2.0 162 chr3R 13975351 intron rdx - chr3R 13975432 intron rdx - chr3R 13975513 intron rdx - chr3R_24_13975001 chr3R_13975001 RAL-340_100b 2900 chr3R 13994277 13994283 chr3R 13994557 13994563 5 280 9.0 3.5 6.2 0.7 286 chr3R 13994277 intron rdx - chr3R 13994420 intron rdx - chr3R 13994563 intron rdx - chr3R_5_13990001 chr3R_13990001 RAL-340_100b 2901 chr3R 13994302 13994333 chr3R 13994557 13994613 9 277 2.5 3.5 3.0 2.2 311 chr3R 13994302 intron rdx - chr3R 13994458 intron rdx - chr3R 13994613 intron rdx - chr3R_9_13990001 chr3R_13990001 RAL-340_100b 2902 chr3R 14014257 14014267 chr3R 14014414 14014424 6 156 6.5 0.0 3.2 1.4 167 chr3R 14014257 intron rdx - chr3R 14014340 intron rdx - chr3R 14014424 intron rdx - chr3R_6_14010001 chr3R_14010001 RAL-340_100b 2903 chr3R 14021624 14021679 chr3R 14023466 14023521 S-element 19 1838 10.0 6.0 8.0 2.1 1897 chr3R 14021624 intron rdx - chr3R 14022572 intron rdx - chr3R 14023521 intron rdx - chr3R_19_14020001 chr3R_14020001 RAL-340_100b 2904 chr3R 14058111 14058151 chr3R 14058245 14058296 10 141 5.0 6.0 5.5 1.5 185 chr3R 14058111 intron foxo + chr3R 14058204 intron foxo + chr3R 14058296 intron foxo + chr3R_10_14055001 chr3R_14055001 RAL-340_100b 2905 chr3R 14067116 14067152 chr3R 14067220 14067256 16 100 8.0 2.5 5.2 2.6 140 chr3R 14067116 exon foxo + chr3R 14067186 intron foxo + chr3R 14067256 intron foxo + chr3R_16_14065001 chr3R_14065001 RAL-340_100b 2906 chr3R 14079802 14079854 chr3R 14079904 14079916 18 102 7.5 3.0 5.2 2.9 114 chr3R 14079802 intron foxo + chr3R 14079859 intron foxo + chr3R 14079916 intron foxo + chr3R_18_14075001 chr3R_14075001 RAL-340_100b 2907 chr3R 14083384 14083393 chr3R 14083510 14083519 6 126 27.5 0.0 13.8 0.4 135 chr3R 14083384 intron foxo + chr3R 14083452 intron foxo + chr3R 14083519 intron foxo + chr3R_6_14080001 chr3R_14080001 RAL-340_100b 2908 chr3R 14083397 14083413 chr3R 14083513 14083539 8 124 21.5 0.0 10.8 0.7 142 chr3R 14083397 intron foxo + chr3R 14083468 intron foxo + chr3R 14083539 intron foxo + chr3R_8_14080001 chr3R_14080001 RAL-340_100b 2909 chr3R 14091481 14091527 chr3R 14091585 14091631 8 104 8.0 2.0 5.0 1.3 150 chr3R 14091481 intron Npc2b + chr3R 14091556 intron Npc2b + chr3R 14091631 intron Npc2b + chr3R_8_14090001 chr3R_14090001 RAL-340_100b 2910 chr3R 14091531 14091537 chr3R 14091635 14091641 6 104 7.5 10.5 9.0 0.6 110 chr3R 14091531 intron Npc2b + chr3R 14091586 intron Npc2b + chr3R 14091641 intron Npc2b + chr3R_6_14090001 chr3R_14090001 RAL-340_100b 2911 chr3R 14117419 14117466 chr3R 14117520 14117567 9 97 7.0 5.5 6.2 1.2 148 chr3R 14117419 intron Kif19A - chr3R 14117493 intron Kif19A - chr3R 14117567 intron Kif19A - chr3R_9_14115001 chr3R_14115001 RAL-340_100b 2912 chr3R 14166683 14166698 chr3R 14167347 14167368 12 667 8.0 17.5 12.8 0.9 685 chr3R 14166683 3` UTR Dop1R1 - chr3R 14167026 3` UTR Dop1R1 - chr3R 14167368 3` UTR Dop1R1 - chr3R_12_14165001 chr3R_14165001 RAL-340_100b 2913 chr3R 14174937 14174947 chr3R 14175049 14175058 4 112 35.5 10.5 23.0 0.2 121 chr3R 14174937 3` UTR Dop1R1 - chr3R 14174998 3` UTR Dop1R1 - chr3R 14175058 3` UTR Dop1R1 - chr3R_4_14170001 chr3R_14170001 RAL-340_100b 2914 chr3R 14174970 14174993 chr3R 14175045 14175063 10 95 13.5 9.0 11.2 0.8 93 chr3R 14174970 3` UTR Dop1R1 - chr3R 14175016 3` UTR Dop1R1 - chr3R 14175063 3` UTR Dop1R1 - chr3R_10_14175001 chr3R_14175001 RAL-340_100b 2915 chr3R 14180786 14180834 chr3R 14185576 14185624 F-element 9 4790 8.0 9.5 8.8 0.9 4838 chr3R 14180786 intron Dop1R1 - chr3R 14183205 intron Dop1R1 - chr3R 14185624 intron Dop1R1 - chr3R_9_14180001 chr3R_14180001 RAL-340_100b 2916 chr3R 14194428 14194455 chr3R 14203582 14203629 roo 5 9170 7.5 5.0 6.2 0.7 9201 chr3R 14194428 intron Dop1R1 - chr3R 14199028 intron Dop1R1 - chr3R 14203629 intron Dop1R1 - chr3R_5_14195001 chr3R_14195001 RAL-340_100b 2917 chr3R 14246376 14246399 chr3R 14247892 14247904 jockey 12 1515 12.0 12.0 12.0 0.9 1528 chr3R 14246376 intergenic not near genes chr3R 14247140 intergenic not near genes chr3R 14247904 intergenic not near genes chr3R_12_14245001 chr3R_14245001 RAL-340_100b 2918 chr3R 14246402 14246418 chr3R 14247882 14247934 jockey 12 1509 9.0 7.5 8.2 1.3 1532 chr3R 14246402 intergenic not near genes chr3R 14247168 intergenic not near genes chr3R 14247934 intergenic not near genes chr3R_12_14245001 chr3R_14245001 RAL-340_100b 2919 chr3R 14280543 14280591 chr3R 14280661 14280694 19 113 6.5 6.5 6.5 2.5 151 chr3R 14280543 intron trx - chr3R 14280618 intron trx - chr3R 14280694 intron trx - chr3R_19_14280001 chr3R_14280001 RAL-340_100b 2920 chr3R 14364040 14364086 chr3R 14364135 14364187 15 96 9.0 7.0 8.0 1.7 147 chr3R 14364040 intron NK7.1 - chr3R 14364114 intron NK7.1 - chr3R 14364187 intron NK7.1 - chr3R_15_14360001 chr3R_14360001 RAL-340_100b 2921 chr3R 14401799 14401847 chr3R 14401920 14401968 15 119 11.0 5.5 8.2 1.6 169 chr3R 14401799 intron cv-c - chr3R 14401884 intron cv-c - chr3R 14401968 intron cv-c - chr3R_15_14400001 chr3R_14400001 RAL-340_100b 2922 chr3R 14406251 14406303 chr3R 14406347 14406404 24 98 7.0 11.0 9.0 2.4 153 chr3R 14406251 intron cv-c - chr3R 14406328 intron cv-c - chr3R 14406404 intron cv-c - chr3R_24_14405001 chr3R_14405001 RAL-340_100b 2923 chr3R 14499849 14499889 chr3R 14499955 14499985 18 98 5.0 8.0 6.5 2.4 136 chr3R 14499849 intron CR44177 + chr3R 14499917 intron CR44177 + chr3R 14499985 intron CR44177 + chr3R_18_14495001 chr3R_14495001 RAL-340_100b 2924 chr3R 14499890 14499898 chr3R 14499954 14499998 5 94 5.0 7.5 6.2 0.7 108 chr3R 14499890 intron CR44177 + chr3R 14499944 intron CR44177 + chr3R 14499998 intron CR44177 + chr3R_5_14495001 chr3R_14495001 RAL-340_100b 2925 chr3R 14527382 14527387 chr3R 14527484 14527489 4 102 26.5 16.0 21.2 0.2 107 chr3R 14527382 intron Pde6 - chr3R 14527436 intron Pde6 - chr3R 14527489 intron Pde6 - chr3R_4_14525001 chr3R_14525001 RAL-340_100b 2926 chr3R 14546028 14546067 chr3R 14546118 14546169 12 99 4.5 6.0 5.2 1.9 141 chr3R 14546028 intron Pde6 - chr3R 14546098 intron Pde6 - chr3R 14546169 intron Pde6 - chr3R_12_14545001 chr3R_14545001 RAL-340_100b 2927 chr3R 14556575 14556595 chr3R 14556681 14556698 12 105 11.5 5.0 8.2 1.3 123 chr3R 14556575 intron Pde6 - chr3R 14556636 intron Pde6 - chr3R 14556698 intron Pde6 - chr3R_12_14555001 chr3R_14555001 RAL-340_100b 2928 chr3R 14577938 14577988 chr3R 14578079 14578129 24 137 3.0 10.0 6.5 3.2 191 chr3R 14577938 intron stumps + chr3R 14578034 intron stumps + chr3R 14578129 intron stumps + chr3R_24_14575001 chr3R_14575001 RAL-340_100b 2929 chr3R 14579331 14579371 chr3R 14579445 14579485 14 113 15.0 8.0 11.5 1.1 154 chr3R 14579331 intron stumps + chr3R 14579408 intron stumps + chr3R 14579485 intron stumps + chr3R_14_14575001 chr3R_14575001 RAL-340_100b 2930 chr3R 14579372 14579382 chr3R 14579439 14579463 5 97 7.5 5.0 6.2 0.7 91 chr3R 14579372 intron stumps + chr3R 14579418 intron stumps + chr3R 14579463 intron stumps + chr3R_5_14575001 chr3R_14575001 RAL-340_100b 2931 chr3R 14590512 14590557 chr3R 21907535 21907536 4 7316996 71.0 59.0 65.0 0.1 7317024 chr3R 14590512 intron stumps + chr3R 18249024 3` UTR 14-3-3epsilon + chr3R 21907536 intergenic CG6678 + chr3R_4_18245001 chr3R_18245001 RAL-340_100b 2932 chr3R 14608448 14608477 chr3R 14608565 14608594 7 116 1.5 11.5 6.5 0.9 146 chr3R 14608448 intergenic stumps + chr3R 14608521 intergenic stumps + chr3R 14608594 intergenic not near genes chr3R_7_14605001 chr3R_14605001 RAL-340_100b 2933 chr3R 14631228 14631268 chr3R 14631331 14631371 11 101 11.0 3.5 7.2 1.3 143 chr3R 14631228 intron,intron CG7886 -,Cad88C + chr3R 14631300 intron,intron CG7886 -,Cad88C + chr3R 14631371 intron,intron CG7886 -,Cad88C + chr3R_11_14630001 chr3R_14630001 RAL-340_100b 2934 chr3R 14631271 14631285 chr3R 14631329 14631388 15 82 6.5 3.5 5.0 2.5 117 chr3R 14631271 intron,intron CG7886 -,Cad88C + chr3R 14631330 intron,intron CG7886 -,Cad88C + chr3R 14631388 intron,intron CG7886 -,Cad88C + chr3R_15_14630001 chr3R_14630001 RAL-340_100b 2935 chr3R 14653781 14653804 chr3R 14653899 14653922 4 118 9.0 4.0 6.5 0.5 141 chr3R 14653781 intron l(3)L1231 - chr3R 14653852 intron l(3)L1231 - chr3R 14653922 intron l(3)L1231 - chr3R_4_14650001 chr3R_14650001 RAL-340_100b 2936 chr3R 14662289 14662338 chr3R 14662395 14662444 17 103 18.5 9.0 13.8 1.1 155 chr3R 14662289 exon Rad17 - chr3R 14662366 intron Rad17 - chr3R 14662444 exon Rad17 - chr3R_17_14660001 chr3R_14660001 RAL-340_100b 2937 chr3R 14672122 14672162 chr3R 14672308 14672345 7 187 1.5 0.0 0.8 3.9 223 chr3R 14672122 intron Meltrin - chr3R 14672234 intron Meltrin - chr3R 14672345 intron Meltrin - chr3R_7_14670001 chr3R_14670001 RAL-340_100b 2938 chr3R 14704365 14704420 chr3R 14704467 14704472 34 99 13.5 9.0 11.2 2.8 107 chr3R 14704365 intron kibra - chr3R 14704418 intron kibra - chr3R 14704472 intron kibra - chr3R_34_14700001 chr3R_14700001 RAL-340_100b 2939 chr3R 14722008 14722058 chr3R 14722144 14722200 14 142 5.5 7.5 6.5 1.9 192 chr3R 14722008 intron kibra - chr3R 14722104 intron kibra - chr3R 14722200 intron kibra - chr3R_14_14720001 chr3R_14720001 RAL-340_100b 2940 chr3R 14756613 14756648 chr3R 14756788 14756802 15 166 9.0 4.5 6.8 1.9 189 chr3R 14756613 intron jvl + chr3R 14756708 intron jvl + chr3R 14756802 intron jvl + chr3R_15_14755001 chr3R_14755001 RAL-340_100b 2941 chr3R 14824520 14824557 chr3R 14824638 14824668 5 117 11.5 0.0 5.8 0.7 148 chr3R 14824520 intron btsz - chr3R 14824594 intron btsz - chr3R 14824668 intron btsz - chr3R_5_14820001 chr3R_14820001 RAL-340_100b 2942 chr3R 14874353 14874365 chr3R 14874456 14874469 9 102 24.5 34.0 29.2 0.3 116 chr3R 14874353 intron btsz - chr3R 14874411 intron btsz - chr3R 14874469 intron btsz - chr3R_9_14870001 chr3R_14870001 RAL-340_100b 2943 chr3R 14877845 14877896 chr3R 14877947 14877998 38 101 9.0 7.0 8.0 4.2 153 chr3R 14877845 intergenic not near genes chr3R 14877922 intergenic not near genes chr3R 14877998 intergenic not near genes chr3R_38_14875001 chr3R_14875001 RAL-340_100b 2944 chr3R 14927215 14927271 chr3R 14927336 14927394 29 120 16.0 5.0 10.5 2.5 179 chr3R 14927215 intergenic not near genes chr3R 14927304 intergenic not near genes chr3R 14927394 intergenic not near genes chr3R_29_14925001 chr3R_14925001 RAL-340_100b 2945 chr3R 14944880 14944886 chr3R 14944981 14944986 7 103 34.5 23.5 29.0 0.2 106 chr3R 14944880 intergenic not near genes chr3R 14944933 intergenic not near genes chr3R 14944986 intergenic not near genes chr3R_7_14940001 chr3R_14940001 RAL-340_100b 2946 chr3R 15041405 15041419 chr3R 15045208 15045228 Doc 8 3806 0.0 8.0 4.0 1.6 3823 chr3R 15041405 intergenic not near genes chr3R 15043316 intergenic not near genes chr3R 15045228 intergenic not near genes chr3R_8_15040001 chr3R_15040001 RAL-340_100b 2947 chr3R 15058442 15058489 chr3R 15059571 15059618 33 1127 21.5 16.0 18.8 1.7 1176 chr3R 15058442 intron dpr9 - chr3R 15059030 intron dpr9 - chr3R 15059618 intron dpr9 - chr3R_33_15055001 chr3R_15055001 RAL-340_100b 2948 chr3R 15058490 15058499 chr3R 15059619 15059627 11 1128 14.0 43.0 28.5 0.4 1137 chr3R 15058490 intron dpr9 - chr3R 15059058 intron dpr9 - chr3R 15059627 intron dpr9 - chr3R_11_15055001 chr3R_15055001 RAL-340_100b 2949 chr3R 15061011 15061035 chr3R 15061117 15061141 17 104 6.0 6.5 6.2 2.4 130 chr3R 15061011 intron dpr9 - chr3R 15061076 intron dpr9 - chr3R 15061141 intron dpr9 - chr3R_17_15060001 chr3R_15060001 RAL-340_100b 2950 chr3R 15071055 15071073 chr3R 16811074 16811086 4 1740022 32.5 62.0 47.2 0.1 1740031 chr3R 15071055 intron dpr9 - chr3R 15941070 intron Sap47 + chr3R 16811086 intron abd-A - chr3R_4_15940001 chr3R_15940001 RAL-340_100b 2951 chr3R 15076641 15076687 chr3R 15076740 15076781 12 94 5.0 11.5 8.2 1.3 140 chr3R 15076641 intron dpr9 - chr3R 15076711 intron dpr9 - chr3R 15076781 intron dpr9 - chr3R_12_15075001 chr3R_15075001 RAL-340_100b 2952 chr3R 15079401 15079453 chr3R 15079552 15079612 12 152 2.5 8.0 5.2 1.9 211 chr3R 15079401 3` UTR CG6966 - chr3R 15079506 3` UTR CG6966 - chr3R 15079612 3` UTR CG6966 - chr3R_12_15075001 chr3R_15075001 RAL-340_100b 2953 chr3R 15079787 15079837 chr3R 15080053 15080057 pogo 24 258 8.0 4.0 6.0 3.4 270 chr3R 15079787 3` UTR CG6966 - chr3R 15079922 3` UTR CG6966 - chr3R 15080057 3` UTR CG6966 - chr3R_24_15075001 chr3R_15075001 RAL-340_100b 2954 chr3R 15084122 15084177 chr3R 15084279 15084334 45 151 14.0 15.5 14.8 2.8 212 chr3R 15084122 intron CG6966 - chr3R 15084228 intron CG6966 - chr3R 15084334 intron CG6966 - chr3R_45_15080001 chr3R_15080001 RAL-340_100b 2955 chr3R 15102491 15102530 chr3R 15109774 15109785 412 6 7276 4.0 3.5 3.8 1.2 7294 chr3R 15102491 intron CG42788 - chr3R 15106138 intron CG42788 - chr3R 15109785 intron CG42788 - chr3R_6_15105001 chr3R_15105001 RAL-340_100b 2956 chr3R 15114889 15114924 chr3R 15114991 15115005 16 98 7.0 9.5 8.2 1.7 116 chr3R 15114889 intron CG42788 - chr3R 15114947 intron CG42788 - chr3R 15115005 intron CG42788 - chr3R_16_15110001 chr3R_15110001 RAL-340_100b 2957 chr3R 15119513 15119562 chr3R 15119619 15119652 17 97 11.5 8.0 9.8 1.6 139 chr3R 15119513 intron CG42788 - chr3R 15119582 intron CG42788 - chr3R 15119652 intron CG42788 - chr3R_17_15115001 chr3R_15115001 RAL-340_100b 2958 chr3R 15162522 15162559 chr3R 15167315 15167352 F-element 13 4793 5.5 6.0 5.8 1.9 4830 chr3R 15162522 intron Gyc88E + chr3R 15164937 intron Gyc88E + chr3R 15167352 intron Gyc88E + chr3R_13_15160001 chr3R_15160001 RAL-340_100b 2959 chr3R 15167787 15167838 chr3R 15167969 15168020 17 179 3.5 15.5 9.5 1.6 233 chr3R 15167787 intron Gyc88E + chr3R 15167904 intron Gyc88E + chr3R 15168020 intron Gyc88E + chr3R_17_15165001 chr3R_15165001 RAL-340_100b 2960 chr3R 15177744 15178041 chr3R 15177852 15178145 17 100 5.0 3.5 4.2 3.3 401 chr3R 15177744 intron,intron Gyc88E +,Mf - chr3R 15177944 intron,intron Gyc88E +,Mf - chr3R 15178145 intron,intron Gyc88E +,Mf - chr3R_17_15175001 chr3R_15175001 RAL-340_100b 2961 chr3R 15178045 15178054 chr3R 15178140 15178158 5 101 4.5 18.0 11.2 0.4 113 chr3R 15178045 intron,intron Gyc88E +,Mf - chr3R 15178102 intron,intron Gyc88E +,Mf - chr3R 15178158 intron,intron Gyc88E +,Mf - chr3R_5_15175001 chr3R_15175001 RAL-340_100b 2962 chr3R 15184512 15184529 chr3R 15184619 15184634 4 106 12.0 9.0 10.5 0.3 122 chr3R 15184512 intron Gyc88E + chr3R 15184573 intron Gyc88E + chr3R 15184634 intron Gyc88E + chr3R_4_15180001 chr3R_15180001 RAL-340_100b 2963 chr3R 15184532 15184570 chr3R 15184617 15184677 14 99 4.0 7.5 5.8 2.1 145 chr3R 15184532 intron Gyc88E + chr3R 15184604 intron Gyc88E + chr3R 15184677 intron Gyc88E + chr3R_14_15180001 chr3R_15180001 RAL-340_100b 2964 chr3R 15190661 15190676 chr3R 15190782 15190826 4 143 5.0 10.5 7.8 0.5 165 chr3R 15190661 3` UTR Gyc88E + chr3R 15190744 3` UTR Gyc88E + chr3R 15190826 3` UTR Gyc88E + chr3R_4_15190001 chr3R_15190001 RAL-340_100b 2965 chr3R 15265380 15265434 chr3R 15265490 15265545 13 110 5.0 7.0 6.0 1.9 165 chr3R 15265380 intergenic Set +,Oscp + chr3R 15265462 intergenic Oscp +,Set + chr3R 15265545 intergenic Oscp +,Set + chr3R_13_15265001 chr3R_15265001 RAL-340_100b 2966 chr3R 15279180 15279213 chr3R 15279367 15279393 14 184 6.0 6.0 6.0 2.0 213 chr3R 15279180 intergenic not near genes chr3R 15279286 intergenic not near genes chr3R 15279393 intergenic not near genes chr3R_14_15275001 chr3R_15275001 RAL-340_100b 2967 chr3R 15279216 15279232 chr3R 15279366 15279419 7 174 4.0 6.0 5.0 1.2 203 chr3R 15279216 intergenic not near genes chr3R 15279318 intergenic not near genes chr3R 15279419 intergenic not near genes chr3R_7_15275001 chr3R_15275001 RAL-340_100b 2968 chr3R 15286987 15286987 chr3R 21907534 21907537 41 6620548 61.5 58.5 60.0 0.7 6620550 chr3R 15286987 intron Tm1 + chr3R 18597262 intron,exon qin +,CG14304 - chr3R 21907537 intergenic CG6678 + chr3R_41_18595001 chr3R_18595001 RAL-340_100b 2969 chr3R 15286988 15286988 chr3R 21907534 21907536 31 6620547 61.5 58.5 60.0 0.5 6620548 chr3R 15286988 intron Tm1 + chr3R 18597262 intron,exon qin +,CG14304 - chr3R 21907536 intergenic CG6678 + chr3R_31_18595001 chr3R_18595001 RAL-340_100b 2970 chr3R 15407864 15407903 chr3R 15408090 15408119 13 232 7.5 10.5 9.0 1.3 255 chr3R 15407864 intergenic not near genes chr3R 15407992 intergenic not near genes chr3R 15408119 intergenic not near genes chr3R_13_15405001 chr3R_15405001 RAL-340_100b 2971 chr3R 15416476 15416476 chr3R 15416582 15416588 4 110 43.5 67.5 55.5 0.1 112 chr3R 15416476 3` UTR Atx2 + chr3R 15416532 3` UTR Atx2 + chr3R 15416588 3` UTR Atx2 + chr3R_4_15415001 chr3R_15415001 RAL-340_100b 2972 chr3R 15417804 15417823 chr3R 21907534 21907536 5 6489722 104.5 58.5 81.5 0.1 6489732 chr3R 15417804 3` UTR mir-2c - chr3R 18662670 exon Cpsf73 - chr3R 21907536 intergenic CG6678 + chr3R_5_18660001 chr3R_18660001 RAL-340_100b 2973 chr3R 15445885 15445905 chr3R 15445995 15446015 14 110 3.5 4.0 3.8 2.9 130 chr3R 15445885 exon AdamTS-A - chr3R 15445950 intron AdamTS-A - chr3R 15446015 intron AdamTS-A - chr3R_14_15445001 chr3R_15445001 RAL-340_100b 2974 chr3R 15601143 15601195 chr3R 15608690 15608742 412 15 7543 8.0 10.0 9.0 1.5 7599 chr3R 15601143 intergenic not near genes chr3R 15604942 intergenic not near genes chr3R 15608742 intergenic not near genes chr3R_15_15600001 chr3R_15600001 RAL-340_100b 2975 chr3R 15618742 15618764 chr3R 15626241 15626263 blood 9 7498 2.5 10.5 6.5 1.2 7521 chr3R 15618742 intergenic not near genes chr3R 15622502 intergenic not near genes chr3R 15626263 intergenic not near genes chr3R_9_15620001 chr3R_15620001 RAL-340_100b 2976 chr3R 15635190 15635238 chr3R 15635336 15635375 6 140 0.0 6.5 3.2 1.4 185 chr3R 15635190 intergenic CG43335 + chr3R 15635282 intergenic CG43335 + chr3R 15635375 intergenic CG43335 + chr3R_6_15635001 chr3R_15635001 RAL-340_100b 2977 chr3R 15646767 15646794 chr3R 15646875 15646902 6 106 5.0 6.0 5.5 0.9 135 chr3R 15646767 intergenic not near genes chr3R 15646834 intergenic not near genes chr3R 15646902 intergenic not near genes chr3R_6_15645001 chr3R_15645001 RAL-340_100b 2978 chr3R 15734157 15734209 chr3R 15734261 15734290 15 107 5.5 4.0 4.8 2.6 133 chr3R 15734157 intergenic not near genes chr3R 15734224 intergenic not near genes chr3R 15734290 intergenic not near genes chr3R_15_15730001 chr3R_15730001 RAL-340_100b 2979 chr3R 15735217 15735234 chr3R 15739962 15739979 F-element 5 4745 10.5 7.5 9.0 0.5 4762 chr3R 15735217 intergenic not near genes chr3R 15737598 intergenic not near genes chr3R 15739979 intergenic not near genes chr3R_5_15735001 chr3R_15735001 RAL-340_100b 2980 chr3R 15801081 15801083 chr3R 18210519 18210551 6 2409459 80.0 31.5 55.8 0.1 2409470 chr3R 15801081 3` UTR nsl1 + chr3R 17005816 exon Irc + chr3R 18210551 intron CG7985 + chr3R_6_17005001 chr3R_17005001 RAL-340_100b 2981 chr3R 15878074 15878094 chr3R 15878187 15878207 8 113 14.0 23.0 18.5 0.4 133 chr3R 15878074 intergenic not near genes chr3R 15878140 intergenic not near genes chr3R 15878207 intergenic not near genes chr3R_8_15875001 chr3R_15875001 RAL-340_100b 2982 chr3R 15878096 15878101 chr3R 15878209 15878214 6 113 9.5 33.0 21.2 0.3 118 chr3R 15878096 intergenic not near genes chr3R 15878155 intergenic not near genes chr3R 15878214 intergenic not near genes chr3R_6_15875001 chr3R_15875001 RAL-340_100b 2983 chr3R 15882873 15882881 chr3R 16146066 16146074 4 263194 32.5 22.0 27.2 0.1 263201 chr3R 15882873 intergenic not near genes chr3R 16014474 intron GATAe + chr3R 16146074 exon CG5903 - chr3R_4_16010001 chr3R_16010001 RAL-340_100b 2984 chr3R 15950283 15950338 chr3R 15950422 15950444 46 138 5.5 17.0 11.2 3.8 161 chr3R 15950283 intron,exon Sap47 +,CG31088 - chr3R 15950364 intron,exon Sap47 +,CG31088 - chr3R 15950444 intron,exon Sap47 +,CG31088 - chr3R_46_15950001 chr3R_15950001 RAL-340_100b 2985 chr3R 16033386 16033429 chr3R 16033492 16033535 15 106 4.0 7.0 5.5 2.3 149 chr3R 16033386 intron pnr + chr3R 16033460 intron pnr + chr3R 16033535 intron pnr + chr3R_15_16030001 chr3R_16030001 RAL-340_100b 2986 chr3R 16166833 16166842 chr3R 16176431 16176447 5 9603 44.5 56.5 50.5 0.1 9614 chr3R 16166833 exon CG6006 + chr3R 16171640 3` UTR CG6006 + chr3R 16176447 intron CG8925 + chr3R_5_16170001 chr3R_16170001 RAL-340_100b 2987 chr3R 16166830 16166859 chr3R 16176448 16176483 30 9614 49.0 50.0 49.5 0.6 9653 chr3R 16166830 exon CG6006 + chr3R 16171656 3` UTR CG6006 + chr3R 16176483 intron CG8925 + chr3R_30_16170001 chr3R_16170001 RAL-340_100b 2988 chr3R 16225066 16225112 chr3R 16225176 16225222 22 110 5.0 8.5 6.8 2.8 156 chr3R 16225066 intergenic not near genes chr3R 16225144 intergenic not near genes chr3R 16225222 intergenic tara + chr3R_22_16225001 chr3R_16225001 RAL-340_100b 2989 chr3R 16374275 16374331 chr3R 16374417 16374451 16 136 6.5 7.0 6.8 2.1 176 chr3R 16374275 intergenic ss - chr3R 16374363 intergenic ss - chr3R 16374451 3` UTR ss - chr3R_16_16370001 chr3R_16370001 RAL-340_100b 2990 chr3R 16472582 16472599 chr3R 16472656 16472659 7 77 9.5 5.0 7.2 0.9 77 chr3R 16472582 intergenic Gyc-89Da + chr3R 16472620 5` UTR Gyc-89Da + chr3R 16472659 5` UTR Gyc-89Da + chr3R_7_16470001 chr3R_16470001 RAL-340_100b 2991 chr3R 16518471 16518513 chr3R 16518575 16518618 35 102 18.0 35.0 26.5 1.3 147 chr3R 16518471 intron CG42342 + chr3R 16518544 intron CG42342 + chr3R 16518618 intron CG42342 + chr3R_35_16515001 chr3R_16515001 RAL-340_100b 2992 chr3R 16518514 16518515 chr3R 16518612 16518620 4 103 16.5 67.5 42.0 0.1 106 chr3R 16518514 intron CG42342 + chr3R 16518567 intron CG42342 + chr3R 16518620 intron CG42342 + chr3R_4_16515001 chr3R_16515001 RAL-340_100b 2993 chr3R 16518517 16518530 chr3R 16518580 16518624 24 94 14.5 37.5 26.0 0.9 107 chr3R 16518517 intron CG42342 + chr3R 16518570 intron CG42342 + chr3R 16518624 intron CG42342 + chr3R_24_16515001 chr3R_16515001 RAL-340_100b 2994 chr3R 16582882 16582919 chr3R 16582986 16582997 17 99 10.5 16.0 13.2 1.2 115 chr3R 16582882 intron Scp2 - chr3R 16582940 intron Scp2 - chr3R 16582997 intron Scp2 - chr3R_17_16580001 chr3R_16580001 RAL-340_100b 2995 chr3R 16683457 16683501 chr3R 16683574 16683603 13 112 0.0 8.0 4.0 2.6 146 chr3R 16683457 intron Ubx - chr3R 16683530 intron Ubx - chr3R 16683603 intron Ubx - chr3R_13_16680001 chr3R_16680001 RAL-340_100b 2996 chr3R 16731904 16731947 chr3R 16732010 16732047 23 99 21.0 23.0 22.0 1.0 143 chr3R 16731904 intron Ubx - chr3R 16731976 intron Ubx - chr3R 16732047 intron Ubx - chr3R_23_16730001 chr3R_16730001 RAL-340_100b 2997 chr3R 16756294 16756345 chr3R 16762510 16762551 diver 18 6213 12.0 4.0 8.0 2.0 6257 chr3R 16756294 intron bxd - chr3R 16759422 intron bxd - chr3R 16762551 intron bxd - chr3R_18_16755001 chr3R_16755001 RAL-340_100b 2998 chr3R 16794709 16794735 chr3R 16794870 16794918 9 173 4.5 4.5 4.5 1.6 209 chr3R 16794709 intergenic not near genes chr3R 16794814 intergenic not near genes chr3R 16794918 intergenic not near genes chr3R_9_16790001 chr3R_16790001 RAL-340_100b 2999 chr3R 16857549 16857597 chr3R 16857711 16857739 25 154 1.5 26.5 14.0 1.7 190 chr3R 16857549 intron iab-8 - chr3R 16857644 intron iab-8 - chr3R 16857739 intron iab-8 - chr3R_25_16855001 chr3R_16855001 RAL-340_100b 3000 chr3R 16889946 16889989 chr3R 16890037 16890046 18 93 7.5 8.0 7.8 2.0 100 chr3R 16889946 intron iab-8 - chr3R 16889996 intron iab-8 - chr3R 16890046 intron iab-8 - chr3R_18_16890001 chr3R_16890001 RAL-340_100b 3001 chr3R 10451877 10451877 chr3R 16910586 16910586 5 6458709 53.0 39.0 46.0 0.1 6458709 chr3R 10451877 intergenic not near genes chr3R 13681232 exon omd - chr3R 16910586 intron iab-8 - chr3R_5_13680001 chr3R_13680001 RAL-340_100b 3002 chr3R 16921818 16921866 chr3R 16921921 16921953 27 101 6.5 16.5 11.5 2.2 135 chr3R 16921818 intron iab-8 - chr3R 16921886 intron iab-8 - chr3R 16921953 intron iab-8 - chr3R_27_16920001 chr3R_16920001 RAL-340_100b 3003 chr3R 16996289 16996332 chr3R 16996381 16996433 20 96 9.5 10.5 10.0 1.8 144 chr3R 16996289 intergenic CG3534 +,CG17556 - chr3R 16996361 intergenic CG3534 +,CG17556 - chr3R 16996433 intergenic CG3534 +,CG17556 - chr3R_20_16995001 chr3R_16995001 RAL-340_100b 3004 chr3R 17049162 17049187 chr3R 17050107 17050132 10 945 40.5 48.5 44.5 0.2 970 chr3R 17049162 intergenic not near genes chr3R 17049647 intergenic not near genes chr3R 17050132 intergenic not near genes chr3R_10_17045001 chr3R_17045001 RAL-340_100b 3005 chr3R 17121498 17121555 chr3R 17121716 17121775 24 219 4.5 3.5 4.0 4.8 277 chr3R 17121498 intron cher - chr3R 17121636 intron,exon cher -,CG42779 + chr3R 17121775 intron,exon cher -,CG42779 + chr3R_24_17120001 chr3R_17120001 RAL-340_100b 3006 chr3R 17184714 17184755 chr3R 17184815 17184841 9 99 1.5 7.5 4.5 1.6 127 chr3R 17184714 intron Mur89F - chr3R 17184778 intron Mur89F - chr3R 17184841 intron Mur89F - chr3R_9_17180001 chr3R_17180001 RAL-340_100b 3007 chr3R 17194389 17194401 chr3R 17194492 17194502 7 102 16.0 7.0 11.5 0.6 113 chr3R 17194389 intron Mur89F - chr3R 17194446 intron Mur89F - chr3R 17194502 intron Mur89F - chr3R_7_17190001 chr3R_17190001 RAL-340_100b 3008 chr3R 17194405 17194428 chr3R 17194490 17194532 9 99 7.5 7.0 7.2 1.1 127 chr3R 17194405 intron Mur89F - chr3R 17194468 intron Mur89F - chr3R 17194532 intron Mur89F - chr3R_9_17190001 chr3R_17190001 RAL-340_100b 3009 chr3R 17209681 17209694 chr3R 17209794 17209807 11 113 20.0 16.5 18.2 0.6 126 chr3R 17209681 intergenic not near genes chr3R 17209744 intergenic not near genes chr3R 17209807 intergenic not near genes chr3R_11_17205001 chr3R_17205001 RAL-340_100b 3010 chr3R 17209695 17209709 chr3R 17209792 17209806 6 107 15.0 15.0 15.0 0.4 111 chr3R 17209695 intergenic not near genes chr3R 17209750 intergenic not near genes chr3R 17209806 intergenic not near genes chr3R_6_17205001 chr3R_17205001 RAL-340_100b 3011 chr3R 17246827 17246875 chr3R 17246949 17246997 36 117 7.0 9.0 8.0 4.0 170 chr3R 17246827 intron beat-IIb - chr3R 17246912 intron beat-IIb - chr3R 17246997 intron beat-IIb - chr3R_36_17245001 chr3R_17245001 RAL-340_100b 3012 chr3R 17268656 17268673 chr3R 17268803 17268820 5 147 13.0 11.5 12.2 0.4 164 chr3R 17268656 intergenic not near genes chr3R 17268738 intergenic not near genes chr3R 17268820 intergenic not near genes chr3R_5_17265001 chr3R_17265001 RAL-340_100b 3013 chr3R 17268676 17268697 chr3R 17268798 17268844 10 143 7.0 10.0 8.5 1.1 168 chr3R 17268676 intergenic not near genes chr3R 17268760 intergenic not near genes chr3R 17268844 intergenic not near genes chr3R_10_17265001 chr3R_17265001 RAL-340_100b 3014 chr3R 17273951 17274001 chr3R 17274083 17274097 26 129 3.5 11.5 7.5 3.1 146 chr3R 17273951 intergenic not near genes chr3R 17274024 intergenic not near genes chr3R 17274097 intergenic not near genes chr3R_26_17270001 chr3R_17270001 RAL-340_100b 3015 chr3R 17280439 17280441 chr3R 29466437 29466444 4 12186002 56.0 17.5 36.8 0.1 12186005 chr3R 17280439 intergenic not near genes chr3R 23373442 exon CG42827 + chr3R 29466444 intron Ptp99A + chr3R_4_23370001 chr3R_23370001 RAL-340_100b 3016 chr3R 17294646 17294674 chr3R 17295099 17295127 BS 15 452 12.5 9.5 11.0 1.2 481 chr3R 17294646 intergenic not near genes chr3R 17294886 intergenic not near genes chr3R 17295127 intergenic not near genes chr3R_15_17290001 chr3R_17290001 RAL-340_100b 3017 chr3R 17294676 17294697 chr3R 17295094 17295109 BS 9 440 6.0 8.0 7.0 1.1 433 chr3R 17294676 intergenic not near genes chr3R 17294892 intergenic not near genes chr3R 17295109 intergenic not near genes chr3R_9_17290001 chr3R_17290001 RAL-340_100b 3018 chr3R 17346246 17346247 chr3R 21907534 21907536 15 4561288 33.5 58.5 46.0 0.3 4561290 chr3R 17346246 intron beat-IIa - chr3R 19626891 intron CG6231 - chr3R 21907536 intergenic CG6678 + chr3R_15_19625001 chr3R_19625001 RAL-340_100b 3019 chr3R 17346675 17346719 chr3R 17348263 17348307 F-element 11 1586 4.0 8.0 6.0 1.6 1632 chr3R 17346675 intron beat-IIa - chr3R 17347491 intron beat-IIa - chr3R 17348307 intron beat-IIa - chr3R_11_17345001 chr3R_17345001 RAL-340_100b 3020 chr3R 17348696 17348739 chr3R 17348810 17348853 16 112 13.5 4.0 8.8 1.6 157 chr3R 17348696 intron beat-IIa - chr3R 17348774 intron beat-IIa - chr3R 17348853 intron beat-IIa - chr3R_16_17345001 chr3R_17345001 RAL-340_100b 3021 chr3R 17348740 17348749 chr3R 17348809 17348863 6 104 10.0 4.0 7.0 0.8 123 chr3R 17348740 intron beat-IIa - chr3R 17348802 intron beat-IIa - chr3R 17348863 intron beat-IIa - chr3R_6_17345001 chr3R_17345001 RAL-340_100b 3022 chr3R 17363914 17363968 chr3R 17364475 17364529 33 551 7.0 4.5 5.8 4.9 615 chr3R 17363914 intron beat-IIa - chr3R 17364222 intron beat-IIa - chr3R 17364529 intron beat-IIa - chr3R_33_17360001 chr3R_17360001 RAL-340_100b 3023 chr3R 17382006 17382052 chr3R 17382128 17382174 16 120 13.0 8.0 10.5 1.4 168 chr3R 17382006 intron,intron Brf -,lute + chr3R 17382090 intron,intron Brf -,lute + chr3R 17382174 intron,intron,3` UTR Brf -,lute +,CR43196 - chr3R_16_17380001 chr3R_17380001 RAL-340_100b 3024 chr3R 17419101 17419127 chr3R 17419294 17419320 8 190 14.0 7.5 10.8 0.7 219 chr3R 17419101 exon CG42834 + chr3R 17419210 3` UTR CG42834 + chr3R 17419320 intergenic CG42834 + chr3R_8_17415001 chr3R_17415001 RAL-340_100b 3025 chr3R 17419129 17419149 chr3R 17419291 17419291 11 180 8.5 5.5 7.0 1.4 162 chr3R 17419129 exon CG42834 + chr3R 17419210 3` UTR CG42834 + chr3R 17419291 3` UTR CG42834 + chr3R_11_17415001 chr3R_17415001 RAL-340_100b 3026 chr3R 17436392 17436416 chr3R 21907534 21907536 5 4471123 33.0 58.5 45.8 0.1 4471144 chr3R 17436392 intron CG5873 + chr3R 19671964 intron Naam + chr3R 21907536 intergenic CG6678 + chr3R_5_19670001 chr3R_19670001 RAL-340_100b 3027 chr3R 17454594 17454626 chr3R 17454805 17454837 14 211 9.0 11.0 10.0 1.3 243 chr3R 17454594 intergenic not near genes chr3R 17454716 intergenic not near genes chr3R 17454837 intergenic not near genes chr3R_14_17450001 chr3R_17450001 RAL-340_100b 3028 chr3R 17461188 17461202 chr3R 17461295 17461305 8 106 9.0 16.0 12.5 0.6 117 chr3R 17461188 intergenic not near genes chr3R 17461246 intergenic not near genes chr3R 17461305 intergenic not near genes chr3R_8_17460001 chr3R_17460001 RAL-340_100b 3029 chr3R 17461209 17461224 chr3R 17461316 17461331 12 106 8.5 20.5 14.5 0.8 122 chr3R 17461209 intergenic not near genes chr3R 17461270 intergenic not near genes chr3R 17461331 intergenic not near genes chr3R_12_17460001 chr3R_17460001 RAL-340_100b 3030 chr3R 17492567 17492580 chr3R 17492677 17492685 6 107 9.0 6.0 7.5 0.7 118 chr3R 17492567 exon Dscam3 - chr3R 17492626 intron Dscam3 - chr3R 17492685 intron Dscam3 - chr3R_6_17490001 chr3R_17490001 RAL-340_100b 3031 chr3R 17492582 17492608 chr3R 17492675 17492690 4 97 3.0 5.0 4.0 0.8 108 chr3R 17492582 exon Dscam3 - chr3R 17492636 intron Dscam3 - chr3R 17492690 intron Dscam3 - chr3R_4_17490001 chr3R_17490001 RAL-340_100b 3032 chr3R 17509235 17509247 chr3R 17516808 17516815 412 4 7572 17.0 20.5 18.8 0.2 7580 chr3R 17509235 intergenic not near genes chr3R 17513025 intergenic not near genes chr3R 17516815 intergenic not near genes chr3R_4_17510001 chr3R_17510001 RAL-340_100b 3033 chr3R 17521574 17521590 chr3R 17521715 17521775 23 164 4.5 9.0 6.8 2.9 201 chr3R 17521574 intergenic not near genes chr3R 17521674 intergenic not near genes chr3R 17521775 intergenic not near genes chr3R_23_17520001 chr3R_17520001 RAL-340_100b 3034 chr3R 17522190 17522202 chr3R 17522308 17522320 6 118 19.5 0.5 10.0 0.5 130 chr3R 17522190 intergenic not near genes chr3R 17522255 intergenic not near genes chr3R 17522320 intergenic not near genes chr3R_6_17520001 chr3R_17520001 RAL-340_100b 3035 chr3R 17591278 17591321 chr3R 17591739 17591751 F-element 20 452 10.0 11.5 10.8 1.7 473 chr3R 17591278 intergenic not near genes chr3R 17591514 intergenic not near genes chr3R 17591751 intergenic not near genes chr3R_20_17590001 chr3R_17590001 RAL-340_100b 3036 chr3R 17638298 17638317 chr3R 17638809 17638818 roo 9 510 11.0 5.5 8.2 1.0 520 chr3R 17638298 intron CG43175 + chr3R 17638558 intron CG43175 + chr3R 17638818 intron,intron CG43175 +,CR45222 + chr3R_9_17635001 chr3R_17635001 RAL-340_100b 3037 chr3R 17638318 17638345 chr3R 17638808 17638830 roo 12 505 7.5 5.5 6.5 1.6 512 chr3R 17638318 intron CG43175 + chr3R 17638574 intron CG43175 + chr3R 17638830 intron,intron CG43175 +,CR45222 + chr3R_12_17635001 chr3R_17635001 RAL-340_100b 3038 chr3R 17645680 17645722 chr3R 17645835 17645870 15 152 6.0 9.5 7.8 1.7 190 chr3R 17645680 intergenic CG43175 + chr3R 17645775 intergenic not near genes chr3R 17645870 intergenic not near genes chr3R_15_17645001 chr3R_17645001 RAL-340_100b 3039 chr3R 17653058 17653076 chr3R 17653172 17653191 6 114 9.0 10.0 9.5 0.6 133 chr3R 17653058 intron,intron CG14322 +,CR45223 - chr3R 17653124 intron,intron CG14322 +,CR45223 - chr3R 17653191 intron,intron CG14322 +,CR45223 - chr3R_6_17650001 chr3R_17650001 RAL-340_100b 3040 chr3R 17714643 17714670 chr3R 17714748 17714765 16 102 44.5 18.5 31.5 0.5 122 chr3R 17714643 intron osa - chr3R 17714704 intron osa - chr3R 17714765 intron osa - chr3R_16_17710001 chr3R_17710001 RAL-340_100b 3041 chr3R 17714671 17714700 chr3R 17714741 17714764 23 81 27.0 23.5 25.2 0.9 93 chr3R 17714671 intron osa - chr3R 17714718 intron osa - chr3R 17714764 intron osa - chr3R_23_17710001 chr3R_17710001 RAL-340_100b 3042 chr3R 17739168 17739219 chr3R 17739265 17739310 16 89 9.0 5.5 7.2 2.0 142 chr3R 17739168 intron TyrRII + chr3R 17739239 intron TyrRII + chr3R 17739310 intron TyrRII + chr3R_16_17735001 chr3R_17735001 RAL-340_100b 3043 chr3R 17764083 17764117 chr3R 17764196 17764198 6 108 2.5 0.0 1.2 2.7 115 chr3R 17764083 intergenic not near genes chr3R 17764140 intergenic not near genes chr3R 17764198 intergenic not near genes chr3R_6_17760001 chr3R_17760001 RAL-340_100b 3044 chr3R 17766565 17766582 chr3R 17766688 17766711 9 126 0.5 7.0 3.8 1.9 146 chr3R 17766565 intergenic not near genes chr3R 17766638 intergenic not near genes chr3R 17766711 intergenic not near genes chr3R_9_17765001 chr3R_17765001 RAL-340_100b 3045 chr3R 17773350 17773386 chr3R 17773470 17773506 15 118 4.5 9.0 6.8 1.9 156 chr3R 17773350 exon CG43102 - chr3R 17773428 intron CG43102 - chr3R 17773506 exon CG43102 - chr3R_15_17770001 chr3R_17770001 RAL-340_100b 3046 chr3R 17811181 17811199 chr3R 17811275 17811304 4 102 13.5 0.0 6.8 0.5 123 chr3R 17811181 intergenic CG18012 -,tinc + chr3R 17811242 intergenic CG18012 -,tinc + chr3R 17811304 intergenic CG18012 -,tinc + chr3R_4_17810001 chr3R_17810001 RAL-340_100b 3047 chr3R 17823186 17823235 chr3R 17823288 17823293 4 91 4.0 5.0 4.5 0.7 107 chr3R 17823186 intron tinc + chr3R 17823240 intron tinc + chr3R 17823293 intron tinc + chr3R_4_17820001 chr3R_17820001 RAL-340_100b 3048 chr3R 17845101 17845217 chr3R 17845208 17845278 15 97 0.5 1.0 0.8 8.3 177 chr3R 17845101 intron tinc + chr3R 17845190 intron tinc + chr3R 17845278 intron tinc + chr3R_15_17845001 chr3R_17845001 RAL-340_100b 3049 chr3R 17858026 17858082 chr3R 17858143 17858199 26 113 6.5 4.0 5.2 4.2 173 chr3R 17858026 intron tinc + chr3R 17858112 intron tinc + chr3R 17858199 intron tinc + chr3R_26_17855001 chr3R_17855001 RAL-340_100b 3050 chr3R 17898348 17898361 chr3R 17898455 17898455 6 103 13.0 18.0 15.5 0.4 107 chr3R 17898348 intron Rim - chr3R 17898402 intron Rim - chr3R 17898455 intron Rim - chr3R_6_17895001 chr3R_17895001 RAL-340_100b 3051 chr3R 17901316 17901317 chr3R 17901383 17901421 6 94 7.0 22.0 14.5 0.4 105 chr3R 17901316 intron Rim - chr3R 17901368 intron Rim - chr3R 17901421 intron Rim - chr3R_6_17900001 chr3R_17900001 RAL-340_100b 3052 chr3R 17901318 17901318 chr3R 17901381 17901422 4 86 7.0 21.0 14.0 0.3 104 chr3R 17901318 intron Rim - chr3R 17901370 intron Rim - chr3R 17901422 intron Rim - chr3R_4_17900001 chr3R_17900001 RAL-340_100b 3053 chr3R 17919555 17919568 chr3R 17919659 17919672 7 104 22.0 6.5 14.2 0.5 117 chr3R 17919555 intergenic cpo + chr3R 17919614 intergenic cpo + chr3R 17919672 intergenic cpo + chr3R_7_17915001 chr3R_17915001 RAL-340_100b 3054 chr3R 17919572 17919606 chr3R 17919660 17919700 24 93 6.5 7.0 6.8 3.1 128 chr3R 17919572 intergenic cpo + chr3R 17919636 intergenic cpo + chr3R 17919700 intergenic cpo + chr3R_24_17915001 chr3R_17915001 RAL-340_100b 3055 chr3R 17925832 17925862 chr3R 17927324 17927354 hobo 24 1491 15.0 24.0 19.5 1.2 1522 chr3R 17925832 intron cpo + chr3R 17926593 intron cpo + chr3R 17927354 intron cpo + chr3R_24_17925001 chr3R_17925001 RAL-340_100b 3056 chr3R 17925863 17925869 chr3R 17927322 17927361 hobo 6 1485 13.0 22.0 17.5 0.3 1498 chr3R 17925863 intron cpo + chr3R 17926612 intron cpo + chr3R 17927361 intron cpo + chr3R_6_17925001 chr3R_17925001 RAL-340_100b 3057 chr3R 17925870 17925883 chr3R 17927317 17927365 hobo 11 1483 9.0 20.0 14.5 0.7 1495 chr3R 17925870 intron cpo + chr3R 17926618 intron cpo + chr3R 17927365 intron cpo + chr3R_11_17925001 chr3R_17925001 RAL-340_100b 3058 chr3R 17998871 17998934 chr3R 21907534 21907534 4 3908632 109.5 58.5 84.0 0.0 3908663 chr3R 17998871 intron cpo + chr3R 19953202 intron Hs6st - chr3R 21907534 intergenic CG6678 + chr3R_4_19950001 chr3R_19950001 RAL-340_100b 3059 chr3R 18006453 18006460 chr3R 18006529 18006552 4 83 10.0 11.0 10.5 0.3 99 chr3R 18006453 intron cpo + chr3R 18006502 intron cpo + chr3R 18006552 intron cpo + chr3R_4_18005001 chr3R_18005001 RAL-340_100b 3060 chr3R 18061574 18061591 chr3R 18063162 18063183 F-element 14 1591 3.5 12.5 8.0 1.6 1609 chr3R 18061574 intergenic not near genes chr3R 18062378 intergenic not near genes chr3R 18063183 intergenic not near genes chr3R_14_18060001 chr3R_18060001 RAL-340_100b 3061 chr3R 18061592 18061607 chr3R 18063155 18063200 F-element 9 1585 2.5 10.0 6.2 1.2 1608 chr3R 18061592 intergenic not near genes chr3R 18062396 intergenic not near genes chr3R 18063200 intergenic not near genes chr3R_9_18060001 chr3R_18060001 RAL-340_100b 3062 chr3R 18065632 18065667 chr3R 18065747 18065785 8 128 1.5 5.5 3.5 1.8 153 chr3R 18065632 intergenic not near genes chr3R 18065708 intergenic not near genes chr3R 18065785 intergenic not near genes chr3R_8_18065001 chr3R_18065001 RAL-340_100b 3063 chr3R 18078129 18078134 chr3R 18078233 18078238 4 104 18.5 0.0 9.2 0.4 109 chr3R 18078129 intergenic not near genes chr3R 18078184 intergenic not near genes chr3R 18078238 intergenic not near genes chr3R_4_18075001 chr3R_18075001 RAL-340_100b 3064 chr3R 18107117 18107133 chr3R 18107225 18107226 7 106 0.0 14.0 7.0 0.9 109 chr3R 18107117 intron sr + chr3R 18107172 intron sr + chr3R 18107226 intron sr + chr3R_7_18105001 chr3R_18105001 RAL-340_100b 3065 chr3R 18122904 18122917 chr3R 18122969 18123019 7 97 3.0 5.0 4.0 1.4 115 chr3R 18122904 intron sr + chr3R 18122962 intron sr + chr3R 18123019 intron sr + chr3R_7_18120001 chr3R_18120001 RAL-340_100b 3066 chr3R 18130645 18130668 chr3R 21907534 21907536 5 3776880 233.5 58.5 146.0 0.0 3776891 chr3R 18130645 exon sr + chr3R 20019090 exon CG4433 - chr3R 21907536 intergenic CG6678 + chr3R_5_20015001 chr3R_20015001 RAL-340_100b 3067 chr3R 18130687 18130693 chr3R 21907534 21907536 4 3776846 219.5 58.5 139.0 0.0 3776849 chr3R 18130687 exon sr + chr3R 20019112 exon CG4433 - chr3R 21907536 intergenic CG6678 + chr3R_4_20015001 chr3R_20015001 RAL-340_100b 3068 chr3R 18136209 18136243 chr3R 18136348 18136382 11 139 5.0 4.5 4.8 1.9 173 chr3R 18136209 intergenic not near genes chr3R 18136296 intergenic not near genes chr3R 18136382 intergenic not near genes chr3R_11_18135001 chr3R_18135001 RAL-340_100b 3069 chr3R 18143537 18143589 chr3R 18143649 18143702 7 114 1.5 2.0 1.8 2.5 165 chr3R 18143537 intergenic not near genes chr3R 18143620 intergenic not near genes chr3R 18143702 intergenic not near genes chr3R_7_18140001 chr3R_18140001 RAL-340_100b 3070 chr3R 18248295 18248331 chr3R 21907534 21907536 6 3659218 105.5 58.5 82.0 0.1 3659241 chr3R 18248295 3` UTR 14-3-3epsilon + chr3R 20077916 intergenic not near genes chr3R 21907536 intergenic CG6678 + chr3R_6_20075001 chr3R_20075001 RAL-340_100b 3071 chr3R 18263295 18263295 chr3R 29382915 29382915 8 11119620 32.5 61.5 47.0 0.2 11119620 chr3R 18263295 intergenic not near genes chr3R 23823105 intron CG34355 + chr3R 29382915 intron Ptp99A + chr3R_8_23820001 chr3R_23820001 RAL-340_100b 3072 chr3R 18291823 18291882 chr3R 18291931 18291990 28 105 7.5 10.0 8.8 2.9 167 chr3R 18291823 intron l(3)05822 - chr3R 18291906 intron l(3)05822 - chr3R 18291990 intron l(3)05822 - chr3R_28_18290001 chr3R_18290001 RAL-340_100b 3073 chr3R 18306964 18306982 chr3R 18307078 18307106 10 120 17.5 11.5 14.5 0.6 142 chr3R 18306964 exon PKD - chr3R 18307035 intron PKD - chr3R 18307106 intron PKD - chr3R_10_18305001 chr3R_18305001 RAL-340_100b 3074 chr3R 18306996 18307011 chr3R 18307109 18307135 8 118 7.0 18.0 12.5 0.6 139 chr3R 18306996 exon PKD - chr3R 18307066 intron PKD - chr3R 18307135 intron PKD - chr3R_8_18305001 chr3R_18305001 RAL-340_100b 3075 chr3R 18331760 18331768 chr3R 18333279 18333285 hopper2 5 1518 20.5 2.5 11.5 0.4 1525 chr3R 18331760 3` UTR CG15803 - chr3R 18332522 intron CG15803 - chr3R 18333285 3` UTR CG15803 - chr3R_5_18330001 chr3R_18330001 RAL-340_100b 3076 chr3R 18352557 18352577 chr3R 18352674 18352690 10 117 19.0 13.5 16.2 0.6 133 chr3R 18352557 intron CG15803 - chr3R 18352624 intron CG15803 - chr3R 18352690 intron CG15803 - chr3R_10_18350001 chr3R_18350001 RAL-340_100b 3077 chr3R 18352578 18352607 chr3R 18352666 18352725 20 111 12.5 11.0 11.8 1.6 147 chr3R 18352578 intron CG15803 - chr3R 18352652 intron CG15803 - chr3R 18352725 3` UTR CG15803 - chr3R_20_18350001 chr3R_18350001 RAL-340_100b 3078 chr3R 18460807 18460835 chr3R 18460912 18460922 8 108 12.5 5.0 8.8 0.8 115 chr3R 18460807 intron fru - chr3R 18460864 intron fru - chr3R 18460922 intron fru - chr3R_8_18460001 chr3R_18460001 RAL-340_100b 3079 chr3R 18472271 18472282 chr3R 18472384 18472408 15 123 16.5 6.5 11.5 1.2 137 chr3R 18472271 intron fru - chr3R 18472340 intron fru - chr3R 18472408 intron fru - chr3R_15_18470001 chr3R_18470001 RAL-340_100b 3080 chr3R 18472283 18472289 chr3R 18472409 18472415 11 126 13.5 12.0 12.8 0.8 132 chr3R 18472283 intron fru - chr3R 18472349 intron fru - chr3R 18472415 intron fru - chr3R_11_18470001 chr3R_18470001 RAL-340_100b 3081 chr3R 18473233 18473249 chr3R 18473345 18473361 7 110 0.0 12.5 6.2 1.0 128 chr3R 18473233 intron fru - chr3R 18473297 intron fru - chr3R 18473361 intron fru - chr3R_7_18470001 chr3R_18470001 RAL-340_100b 3082 chr3R 18500714 18500739 chr3R 18500859 18500880 8 143 0.0 7.0 3.5 1.8 166 chr3R 18500714 intron fru - chr3R 18500797 intron fru - chr3R 18500880 intron fru - chr3R_8_18500001 chr3R_18500001 RAL-340_100b 3083 chr3R 18558882 18558912 chr3R 18558989 18558993 12 98 16.5 7.5 12.0 0.9 111 chr3R 18558882 intergenic not near genes chr3R 18558938 intergenic not near genes chr3R 18558993 intergenic not near genes chr3R_12_18555001 chr3R_18555001 RAL-340_100b 3084 chr3R 18575548 18575584 chr3R 18575656 18575693 18 106 12.0 5.5 8.8 1.8 145 chr3R 18575548 intron,intron CG7694 +,fray + chr3R 18575620 intron,intron CG7694 +,fray + chr3R 18575693 intron,intron CG7694 +,fray + chr3R_18_18575001 chr3R_18575001 RAL-340_100b 3085 chr3R 18578256 18578307 chr3R 18578423 18578434 16 155 7.5 8.0 7.8 1.8 178 chr3R 18578256 intron,intron CG7694 +,fray + chr3R 18578345 intron,intron CG7694 +,fray + chr3R 18578434 intron,intron CG7694 +,fray + chr3R_16_18575001 chr3R_18575001 RAL-340_100b 3086 chr3R 18606490 18606525 chr3R 18610736 18610782 F-element 18 4251 13.0 7.0 10.0 1.6 4292 chr3R 18606490 intron,intron qin +,CG14304 - chr3R 18608636 intron,intron qin +,CG14304 - chr3R 18610782 intron,intron qin +,CG14304 - chr3R_18_18605001 chr3R_18605001 RAL-340_100b 3087 chr3R 18617697 18617735 chr3R 18617797 18617832 7 101 2.0 10.5 6.2 1.0 135 chr3R 18617697 intron,intron qin +,CG14304 - chr3R 18617764 intron,intron qin +,CG14304 - chr3R 18617832 intron,intron qin +,CG14304 - chr3R_7_18615001 chr3R_18615001 RAL-340_100b 3088 chr3R 18618243 18618297 chr3R 18618353 18618407 24 107 1.5 8.0 4.8 4.1 164 chr3R 18618243 intron,intron qin +,CG14304 - chr3R 18618325 intron,intron qin +,CG14304 - chr3R 18618407 intron,intron qin +,CG14304 - chr3R_24_18615001 chr3R_18615001 RAL-340_100b 3089 chr3R 18628851 18629033 chr3R 18629000 18629148 18 137 1.0 1.0 1.0 9.0 297 chr3R 18628851 intron qin + chr3R 18629000 intron qin + chr3R 18629148 intron qin + chr3R_18_18625001 chr3R_18625001 RAL-340_100b 3090 chr3R 18695737 18695749 chr3R 18695846 18695858 5 108 16.0 0.0 8.0 0.6 121 chr3R 18695737 3` UTR CG34282 + chr3R 18695798 intergenic CG34282 + chr3R 18695858 intergenic CG34282 + chr3R_5_18695001 chr3R_18695001 RAL-340_100b 3091 chr3R 18721034 18721059 chr3R 18721196 18721221 8 162 2.0 4.0 3.0 2.0 187 chr3R 18721034 intron Cha + chr3R 18721128 intron Cha + chr3R 18721221 intron Cha + chr3R_8_18720001 chr3R_18720001 RAL-340_100b 3092 chr3R 18766757 18766806 chr3R 18766855 18766909 10 101 5.0 5.5 5.2 1.6 152 chr3R 18766757 intron CG7720 - chr3R 18766833 intron CG7720 - chr3R 18766909 intron CG7720 - chr3R_10_18765001 chr3R_18765001 RAL-340_100b 3093 chr3R 18770267 18770318 chr3R 18770374 18770425 14 106 7.0 5.0 6.0 2.0 158 chr3R 18770267 intron CG7720 - chr3R 18770346 intron CG7720 - chr3R 18770425 intron CG7720 - chr3R_14_18770001 chr3R_18770001 RAL-340_100b 3094 chr3R 18781683 18781727 chr3R 18781773 18781780 21 89 13.0 8.0 10.5 1.8 97 chr3R 18781683 intron CG7720 - chr3R 18781732 intron CG7720 - chr3R 18781780 intron CG7720 - chr3R_21_18780001 chr3R_18780001 RAL-340_100b 3095 chr3R 18782716 18782770 chr3R 18782835 18782879 22 116 9.0 3.5 6.2 3.1 163 chr3R 18782716 intron CG7720 - chr3R 18782798 intron CG7720 - chr3R 18782879 intron CG7720 - chr3R_22_18780001 chr3R_18780001 RAL-340_100b 3096 chr3R 18791474 18791479 chr3R 18791573 18791583 4 102 33.0 7.5 20.2 0.2 109 chr3R 18791474 intron CG7720 - chr3R 18791528 intron CG7720 - chr3R 18791583 intron CG7720 - chr3R_4_18790001 chr3R_18790001 RAL-340_100b 3097 chr3R 18791485 18791517 chr3R 18791573 18791602 19 91 16.0 7.5 11.8 1.5 117 chr3R 18791485 intron CG7720 - chr3R 18791544 intron CG7720 - chr3R 18791602 intron CG7720 - chr3R_19_18790001 chr3R_18790001 RAL-340_100b 3098 chr3R 18792803 18792836 chr3R 18792901 18792944 11 107 3.5 0.0 1.8 3.9 141 chr3R 18792803 intron CG7720 - chr3R 18792874 intron CG7720 - chr3R 18792944 intron CG7720 - chr3R_11_18790001 chr3R_18790001 RAL-340_100b 3099 chr3R 18807304 18807334 chr3R 18807405 18807430 9 96 8.5 0.5 4.5 1.6 126 chr3R 18807304 intron CG18208 - chr3R 18807367 intron CG18208 - chr3R 18807430 intron CG18208 - chr3R_9_18805001 chr3R_18805001 RAL-340_100b 3100 chr3R 18817484 18817540 chr3R 18817607 18817634 21 121 3.5 1.0 2.2 6.6 150 chr3R 18817484 intron CG18208 - chr3R 18817559 intron CG18208 - chr3R 18817634 intron CG18208 - chr3R_21_18815001 chr3R_18815001 RAL-340_100b 3101 chr3R 18895381 18895400 chr3R 18895483 18895502 14 102 9.0 3.5 6.2 1.9 121 chr3R 18895381 intergenic not near genes chr3R 18895442 intergenic not near genes chr3R 18895502 intergenic not near genes chr3R_14_18895001 chr3R_18895001 RAL-340_100b 3102 chr3R 18895403 18895571 chr3R 18895479 18895681 29 105 2.5 4.0 3.2 6.9 278 chr3R 18895403 intergenic not near genes chr3R 18895542 intergenic not near genes chr3R 18895681 intergenic not near genes chr3R_29_18895001 chr3R_18895001 RAL-340_100b 3103 chr3R 19013004 19013044 chr3R 19013104 19013153 21 108 7.0 11.5 9.2 2.1 149 chr3R 19013004 intron gukh + chr3R 19013078 intron gukh + chr3R 19013153 intron gukh + chr3R_21_19010001 chr3R_19010001 RAL-340_100b 3104 chr3R 19033909 19033939 chr3R 19034007 19034042 9 96 13.5 8.0 10.8 0.8 133 chr3R 19033909 intron CG6026 + chr3R 19033976 intron CG6026 + chr3R 19034042 intron CG6026 + chr3R_9_19030001 chr3R_19030001 RAL-340_100b 3105 chr3R 19033942 19033958 chr3R 19034005 19034061 11 94 8.0 7.5 7.8 1.2 119 chr3R 19033942 intron CG6026 + chr3R 19034002 intron CG6026 + chr3R 19034061 intron CG6026 + chr3R_11_19030001 chr3R_19030001 RAL-340_100b 3106 chr3R 19060252 19060306 chr3R 19060364 19060417 40 110 10.0 15.5 12.8 2.9 165 chr3R 19060252 intron cdi - chr3R 19060334 intron cdi - chr3R 19060417 intron cdi - chr3R_40_19060001 chr3R_19060001 RAL-340_100b 3107 chr3R 19117039 19117046 chr3R 19117208 19117215 4 169 13.5 0.0 6.8 0.5 176 chr3R 19117039 intron CG6040 + chr3R 19117127 intron CG6040 + chr3R 19117215 intron CG6040 + chr3R_4_19115001 chr3R_19115001 RAL-340_100b 3108 chr3R 19139753 19139810 chr3R 19139873 19139913 15 117 6.5 12.5 9.5 1.4 160 chr3R 19139753 3` UTR Ppcs - chr3R 19139833 3` UTR Ppcs - chr3R 19139913 3` UTR Ppcs - chr3R_15_19135001 chr3R_19135001 RAL-340_100b 3109 chr3R 19193002 19193009 chr3R 19197292 19197338 F-element 10 4314 8.0 14.5 11.2 0.8 4336 chr3R 19193002 intron CG31475 + chr3R 19195170 intron CG31475 + chr3R 19197338 intron CG31475 + chr3R_10_19195001 chr3R_19195001 RAL-340_100b 3110 chr3R 19276910 19276938 chr3R 19277015 19277043 7 105 10.0 3.0 6.5 0.9 133 chr3R 19276910 intergenic not near genes chr3R 19276976 intergenic not near genes chr3R 19277043 intergenic not near genes chr3R_7_19275001 chr3R_19275001 RAL-340_100b 3111 chr3R 19333575 19333601 chr3R 21907534 21907536 7 2573946 91.5 58.5 75.0 0.1 2573961 chr3R 19333575 intergenic not near genes chr3R 20620556 3` UTR CG5466 + chr3R 21907536 intergenic CG6678 + chr3R_7_20620001 chr3R_20620001 RAL-340_100b 3112 chr3R 19337199 19337205 chr3R 19337301 19337307 4 102 30.5 44.5 37.5 0.1 108 chr3R 19337199 intergenic not near genes chr3R 19337253 intergenic not near genes chr3R 19337307 intergenic not near genes chr3R_4_19335001 chr3R_19335001 RAL-340_100b 3113 chr3R 19340374 19340415 chr3R 19340476 19340515 17 97 13.0 8.5 10.8 1.4 141 chr3R 19340374 intergenic not near genes chr3R 19340444 intergenic not near genes chr3R 19340515 intergenic not near genes chr3R_17_19340001 chr3R_19340001 RAL-340_100b 3114 chr3R 19340416 19340418 chr3R 19340473 19340520 4 91 10.5 9.0 9.8 0.4 104 chr3R 19340416 intergenic not near genes chr3R 19340468 intergenic not near genes chr3R 19340520 intergenic not near genes chr3R_4_19340001 chr3R_19340001 RAL-340_100b 3115 chr3R 19340420 19340430 chr3R 19340472 19340532 10 86 9.5 9.0 9.2 1.0 112 chr3R 19340420 intergenic not near genes chr3R 19340476 intergenic not near genes chr3R 19340532 intergenic not near genes chr3R_10_19340001 chr3R_19340001 RAL-340_100b 3116 chr3R 19417534 19417555 chr3R 19417635 19417678 6 115 0.5 2.5 1.5 2.4 144 chr3R 19417534 intron CG31221 + chr3R 19417606 intron CG31221 + chr3R 19417678 intron CG31221 + chr3R_6_19415001 chr3R_19415001 RAL-340_100b 3117 chr3R 19429715 19429746 chr3R 19429829 19429860 5 114 4.5 4.0 4.2 1.0 145 chr3R 19429715 intron CG31221 + chr3R 19429788 intron CG31221 + chr3R 19429860 intron CG31221 + chr3R_5_19425001 chr3R_19425001 RAL-340_100b 3118 chr3R 19429751 19429764 chr3R 19429824 19429878 7 100 2.0 4.0 3.0 1.8 127 chr3R 19429751 intron CG31221 + chr3R 19429814 intron CG31221 + chr3R 19429878 intron CG31221 + chr3R_7_19425001 chr3R_19425001 RAL-340_100b 3119 chr3R 19439398 19439438 chr3R 19439532 19439572 13 133 6.0 11.0 8.5 1.4 174 chr3R 19439398 intron CG31221 + chr3R 19439485 intron CG31221 + chr3R 19439572 intron CG31221 + chr3R_13_19435001 chr3R_19435001 RAL-340_100b 3120 chr3R 19494389 19494408 chr3R 19494494 19494513 9 103 4.5 7.5 6.0 1.3 124 chr3R 19494389 intron Dys + chr3R 19494451 intron Dys + chr3R 19494513 intron Dys + chr3R_9_19490001 chr3R_19490001 RAL-340_100b 3121 chr3R 19584317 19584353 chr3R 19584452 19584480 8 130 2.5 5.0 3.8 1.7 163 chr3R 19584317 intron Dys + chr3R 19584398 intron Dys + chr3R 19584480 intron Dys + chr3R_8_19580001 chr3R_19580001 RAL-340_100b 3122 chr3R 19590626 19590683 chr3R 19590743 19590793 11 116 0.0 7.5 3.8 2.3 167 chr3R 19590626 exon Dys + chr3R 19590710 intron Dys + chr3R 19590793 exon Dys + chr3R_11_19590001 chr3R_19590001 RAL-340_100b 3123 chr3R 19602739 19602784 chr3R 19602837 19602861 11 99 1.5 5.0 3.2 2.6 122 chr3R 19602739 intergenic CG7333 + chr3R 19602800 intergenic CG7333 + chr3R 19602861 intergenic CG7333 + chr3R_11_19600001 chr3R_19600001 RAL-340_100b 3124 chr3R 19676949 19677002 chr3R 19677053 19677113 27 106 5.0 5.0 5.0 4.5 164 chr3R 19676949 intron Naam + chr3R 19677031 intron Naam + chr3R 19677113 intron Naam + chr3R_27_19675001 chr3R_19675001 RAL-340_100b 3125 chr3R 19827506 19827550 chr3R 19827617 19827661 10 110 7.5 5.5 6.5 1.3 155 chr3R 19827506 intron bnl - chr3R 19827584 intron bnl - chr3R 19827661 exon bnl - chr3R_10_19825001 chr3R_19825001 RAL-340_100b 3126 chr3R 19888003 19888034 chr3R 19888101 19888152 14 105 13.0 10.5 11.8 1.1 149 chr3R 19888003 intron ninaE - chr3R 19888078 5` UTR ninaE - chr3R 19888152 5` UTR ninaE - chr3R_14_19885001 chr3R_19885001 RAL-340_100b 3127 chr3R 19950013 19950061 chr3R 19950110 19950164 22 98 6.5 10.5 8.5 2.3 151 chr3R 19950013 intron Hs6st - chr3R 19950088 intron Hs6st - chr3R 19950164 intron Hs6st - chr3R_22_19950001 chr3R_19950001 RAL-340_100b 3128 chr3R 20066097 20066145 chr3R 20066306 20066359 15 207 9.0 0.5 4.8 2.6 262 chr3R 20066097 intergenic not near genes chr3R 20066228 intergenic not near genes chr3R 20066359 intergenic not near genes chr3R_15_20065001 chr3R_20065001 RAL-340_100b 3129 chr3R 20066539 20066546 chr3R 20066794 20066807 5 260 4.5 5.0 4.8 0.9 268 chr3R 20066539 intergenic not near genes chr3R 20066673 intergenic not near genes chr3R 20066807 intergenic not near genes chr3R_5_20065001 chr3R_20065001 RAL-340_100b 3130 chr3R 20066553 20066579 chr3R 20066793 20066805 8 251 2.5 5.0 3.8 1.7 252 chr3R 20066553 intergenic not near genes chr3R 20066679 intergenic not near genes chr3R 20066805 intergenic not near genes chr3R_8_20065001 chr3R_20065001 RAL-340_100b 3131 chr3R 20109538 20109554 chr3R 20114769 20114785 copia 7 5231 13.0 7.0 10.0 0.6 5247 chr3R 20109538 intergenic not near genes chr3R 20112162 intergenic not near genes chr3R 20114785 intergenic CG10887 + chr3R_7_20110001 chr3R_20110001 RAL-340_100b 3132 chr3R 20109555 20109565 chr3R 20114742 20114796 copia 11 5221 10.0 2.0 6.0 1.6 5241 chr3R 20109555 intergenic not near genes chr3R 20112176 intergenic not near genes chr3R 20114796 intergenic CG10887 + chr3R_11_20110001 chr3R_20110001 RAL-340_100b 3133 chr3R 20132954 20132966 chr3R 20133055 20133064 6 100 9.5 1.5 5.5 0.9 110 chr3R 20132954 intergenic not near genes chr3R 20133009 intergenic not near genes chr3R 20133064 intergenic not near genes chr3R_6_20130001 chr3R_20130001 RAL-340_100b 3134 chr3R 20156672 20156694 chr3R 20165867 20165889 roo 6 9195 13.0 14.5 13.8 0.4 9217 chr3R 20156672 intergenic not near genes chr3R 20161280 intergenic not near genes chr3R 20165889 intergenic not near genes chr3R_6_20160001 chr3R_20160001 RAL-340_100b 3135 chr3R 20156695 20156719 chr3R 20165864 20165914 roo 17 9190 7.0 13.5 10.2 1.5 9219 chr3R 20156695 intergenic not near genes chr3R 20161304 intergenic not near genes chr3R 20165914 intergenic not near genes chr3R_17_20160001 chr3R_20160001 RAL-340_100b 3136 chr3R 20203923 20203932 chr3R 20204029 20204032 6 105 4.5 3.5 4.0 1.2 109 chr3R 20203923 intergenic not near genes chr3R 20203978 intergenic not near genes chr3R 20204032 intergenic not near genes chr3R_6_20200001 chr3R_20200001 RAL-340_100b 3137 chr3R 20205543 20205596 chr3R 20205690 20205743 11 143 11.0 7.0 9.0 1.1 200 chr3R 20205543 intron Nlg4 + chr3R 20205643 intron Nlg4 + chr3R 20205743 intron Nlg4 + chr3R_11_20205001 chr3R_20205001 RAL-340_100b 3138 chr3R 20205918 20205938 chr3R 20206017 20206047 6 107 0.5 0.0 0.2 5.0 129 chr3R 20205918 intron Nlg4 + chr3R 20205982 intron Nlg4 + chr3R 20206047 intron Nlg4 + chr3R_6_20205001 chr3R_20205001 RAL-340_100b 3139 chr3R 20209779 20209833 chr3R 20209890 20209944 17 108 10.0 5.5 7.8 1.9 165 chr3R 20209779 intron,5` UTR Nlg4 +,CG17199 - chr3R 20209862 intron Nlg4 + chr3R 20209944 intron Nlg4 + chr3R_17_20205001 chr3R_20205001 RAL-340_100b 3140 chr3R 20222531 20222537 chr3R 20222772 20222778 6 241 29.0 12.5 20.8 0.3 247 chr3R 20222531 intron Nlg4 + chr3R 20222654 intron Nlg4 + chr3R 20222778 intron Nlg4 + chr3R_6_20220001 chr3R_20220001 RAL-340_100b 3141 chr3R 20222538 20222581 chr3R 20222764 20222812 22 228 11.5 8.5 10.0 2.0 274 chr3R 20222538 intron Nlg4 + chr3R 20222675 intron Nlg4 + chr3R 20222812 intron Nlg4 + chr3R_22_20220001 chr3R_20220001 RAL-340_100b 3142 chr3R 20231446 20231466 chr3R 20231600 20231620 7 155 61.5 37.0 49.2 0.1 174 chr3R 20231446 intron Nlg4 + chr3R 20231533 intron Nlg4 + chr3R 20231620 intron Nlg4 + chr3R_7_20230001 chr3R_20230001 RAL-340_100b 3143 chr3R 20231444 20231471 chr3R 20231623 20231632 8 159 62.0 23.5 42.8 0.2 188 chr3R 20231444 intron Nlg4 + chr3R 20231538 intron Nlg4 + chr3R 20231632 intron Nlg4 + chr3R_8_20230001 chr3R_20230001 RAL-340_100b 3144 chr3R 20231442 20231498 chr3R 20231636 20231652 5 162 65.5 18.5 42.0 0.1 210 chr3R 20231442 intron Nlg4 + chr3R 20231547 intron Nlg4 + chr3R 20231652 intron Nlg4 + chr3R_5_20230001 chr3R_20230001 RAL-340_100b 3145 chr3R 20245268 20245306 chr3R 20248902 20248941 F-element 12 3635 9.5 3.0 6.2 1.7 3673 chr3R 20245268 3` UTR Nlg4 + chr3R 20247104 intergenic not near genes chr3R 20248941 intergenic not near genes chr3R_12_20245001 chr3R_20245001 RAL-340_100b 3146 chr3R 20258636 20258683 chr3R 20258745 20258792 15 109 6.0 17.5 11.8 1.2 156 chr3R 20258636 intron cic + chr3R 20258714 intron cic + chr3R 20258792 intron cic + chr3R_15_20255001 chr3R_20255001 RAL-340_100b 3147 chr3R 20266493 20266544 chr3R 20272989 20273040 Burdock 31 6489 8.0 13.0 10.5 2.7 6547 chr3R 20266493 intron cic + chr3R 20269766 intron cic + chr3R 20273040 intron cic + chr3R_31_20265001 chr3R_20265001 RAL-340_100b 3148 chr3R 20282257 20282308 chr3R 20282356 20282377 20 95 0.5 2.5 1.5 8.0 120 chr3R 20282257 intron cic + chr3R 20282317 intron cic + chr3R 20282377 intron cic + chr3R_20_20280001 chr3R_20280001 RAL-340_100b 3149 chr3R 20330976 20331032 chr3R 20331487 20331542 roo 13 511 7.5 3.0 5.2 2.1 566 chr3R 20330976 intergenic Sirt2 + chr3R 20331259 intergenic Sirt2 + chr3R 20331542 intergenic not near genes chr3R_13_20330001 chr3R_20330001 RAL-340_100b 3150 chr3R 20350375 20350423 chr3R 20350622 20350670 18 245 7.0 7.0 7.0 2.2 295 chr3R 20350375 intergenic not near genes chr3R 20350522 intergenic not near genes chr3R 20350670 intergenic not near genes chr3R_18_20350001 chr3R_20350001 RAL-340_100b 3151 chr3R 20450131 20450143 chr3R 20450241 20450253 8 110 1.5 6.5 4.0 1.6 122 chr3R 20450131 intron Gfrl - chr3R 20450192 intron Gfrl - chr3R 20450253 intron Gfrl - chr3R_8_20450001 chr3R_20450001 RAL-340_100b 3152 chr3R 20467093 20467106 chr3R 20467150 20467207 8 79 6.5 6.5 6.5 1.1 114 chr3R 20467093 intron Gfrl - chr3R 20467150 intron Gfrl - chr3R 20467207 intron Gfrl - chr3R_8_20465001 chr3R_20465001 RAL-340_100b 3153 chr3R 20498495 20498547 chr3R 20498613 20498665 5 118 7.5 1.5 4.5 0.9 170 chr3R 20498495 intergenic not near genes chr3R 20498580 intergenic not near genes chr3R 20498665 intergenic not near genes chr3R_5_20495001 chr3R_20495001 RAL-340_100b 3154 chr3R 20506571 20506610 chr3R 20507395 20507438 BS 15 824 1.5 5.5 3.5 3.3 867 chr3R 20506571 intergenic Or92a + chr3R 20507004 intergenic CG4288 - chr3R 20507438 3` UTR CG4288 - chr3R_15_20505001 chr3R_20505001 RAL-340_100b 3155 chr3R 20512991 20513015 chr3R 20515719 20515738 opus 4 2727 3.5 5.0 4.2 0.8 2747 chr3R 20512991 intergenic not near genes chr3R 20514364 intergenic not near genes chr3R 20515738 intergenic not near genes chr3R_4_20510001 chr3R_20510001 RAL-340_100b 3156 chr3R 20545957 20546009 chr3R 20546062 20546089 18 106 4.0 12.5 8.2 2.0 132 chr3R 20545957 intron Stat92E - chr3R 20546023 intron Stat92E - chr3R 20546089 intron Stat92E - chr3R_18_20545001 chr3R_20545001 RAL-340_100b 3157 chr3R 20585909 20585941 chr3R 20586019 20586051 17 109 12.0 0.5 6.2 2.4 142 chr3R 20585909 intergenic CG16953 -,Sep2 - chr3R 20585980 intergenic CG16953 -,Sep2 - chr3R 20586051 intergenic Sep2 -,CG16953 - chr3R_17_20585001 chr3R_20585001 RAL-340_100b 3158 chr3R 20594474 20594479 chr3R 20594579 20594594 6 112 17.5 0.5 9.0 0.6 120 chr3R 20594474 intron bon + chr3R 20594534 intron bon + chr3R 20594594 intron bon + chr3R_6_20590001 chr3R_20590001 RAL-340_100b 3159 chr3R 20594482 20594488 chr3R 20594597 20594600 4 114 13.5 0.5 7.0 0.5 118 chr3R 20594482 intron bon + chr3R 20594541 intron bon + chr3R 20594600 intron bon + chr3R_4_20590001 chr3R_20590001 RAL-340_100b 3160 chr3R 20594495 20594513 chr3R 20594580 20594622 5 108 5.5 0.5 3.0 1.2 127 chr3R 20594495 intron bon + chr3R 20594558 intron bon + chr3R 20594622 intron bon + chr3R_5_20590001 chr3R_20590001 RAL-340_100b 3161 chr3R 20617492 20617517 chr3R 20617776 20617811 6 289 4.0 4.5 4.2 1.2 319 chr3R 20617492 intergenic CG5466 + chr3R 20617652 intergenic CG5466 + chr3R 20617811 intergenic CG5466 + chr3R_6_20615001 chr3R_20615001 RAL-340_100b 3162 chr3R 20663702 20663711 chr3R 20663830 20663840 5 129 21.5 16.0 18.8 0.3 138 chr3R 20663702 intergenic not near genes chr3R 20663771 intergenic not near genes chr3R 20663840 intergenic not near genes chr3R_5_20660001 chr3R_20660001 RAL-340_100b 3163 chr3R 20663712 20663724 chr3R 20663826 20663853 10 126 14.5 15.5 15.0 0.6 141 chr3R 20663712 intergenic not near genes chr3R 20663782 intergenic not near genes chr3R 20663853 intergenic not near genes chr3R_10_20660001 chr3R_20660001 RAL-340_100b 3164 chr3R 20663726 20663740 chr3R 20663810 20663863 6 118 6.0 6.5 6.2 0.8 137 chr3R 20663726 intergenic not near genes chr3R 20663794 intergenic not near genes chr3R 20663863 intergenic not near genes chr3R_6_20660001 chr3R_20660001 RAL-340_100b 3165 chr3R 20686937 20686992 chr3R 20687397 20687452 21 451 6.0 5.5 5.8 3.1 515 chr3R 20686937 intergenic not near genes chr3R 20687194 intergenic not near genes chr3R 20687452 intergenic not near genes chr3R_21_20685001 chr3R_20685001 RAL-340_100b 3166 chr3R 20703459 20703510 chr3R 20703878 20703929 12 417 5.0 10.5 7.8 1.4 470 chr3R 20703459 intron Oamb - chr3R 20703694 intron Oamb - chr3R 20703929 intron Oamb - chr3R_12_20700001 chr3R_20700001 RAL-340_100b 3167 chr3R 20707721 20707774 chr3R 20707961 20708011 22 239 6.0 13.5 9.8 2.0 290 chr3R 20707721 intron Oamb - chr3R 20707866 intron Oamb - chr3R 20708011 intron Oamb - chr3R_22_20705001 chr3R_20705001 RAL-340_100b 3168 chr3R 20730908 20731056 chr3R 20731033 20731169 15 117 1.0 0.5 0.8 8.3 261 chr3R 20730908 intergenic not near genes chr3R 20731038 intergenic not near genes chr3R 20731169 intergenic CG31205 + chr3R_15_20730001 chr3R_20730001 RAL-340_100b 3169 chr3R 20767505 20767528 chr3R 20767593 20767641 7 107 3.5 4.0 3.8 1.5 136 chr3R 20767505 intron Syp + chr3R 20767573 intron Syp + chr3R 20767641 intron Syp + chr3R_7_20765001 chr3R_20765001 RAL-340_100b 3170 chr3R 20771703 20771720 chr3R 20771800 20771816 6 98 0.0 5.0 2.5 1.7 113 chr3R 20771703 intron,intron Syp +,Takl1 - chr3R 20771760 intron,intron Syp +,Takl1 - chr3R 20771816 intron,exon Syp +,Takl1 - chr3R_6_20770001 chr3R_20770001 RAL-340_100b 3171 chr3R 20787422 20787458 chr3R 20787529 20787574 14 113 9.0 5.5 7.2 1.7 152 chr3R 20787422 intron Syp + chr3R 20787498 intron Syp + chr3R 20787574 intron Syp + chr3R_14_20785001 chr3R_20785001 RAL-340_100b 3172 chr3R 20850064 20850105 chr3R 20850174 20850202 6 107 1.0 2.0 1.5 2.4 138 chr3R 20850064 intergenic RpS30 + chr3R 20850133 intergenic RpS30 + chr3R 20850202 intergenic RpS30 + chr3R_6_20850001 chr3R_20850001 RAL-340_100b 3173 chr3R 20899899 20899933 chr3R 20900010 20900054 7 116 4.0 4.0 4.0 1.4 155 chr3R 20899899 intergenic not near genes chr3R 20899976 intergenic not near genes chr3R 20900054 intergenic not near genes chr3R_7_20895001 chr3R_20895001 RAL-340_100b 3174 chr3R 20901632 20901683 chr3R 20901760 20901811 20 127 8.5 17.5 13.0 1.4 179 chr3R 20901632 intergenic CG5621 + chr3R 20901722 intergenic CG5621 + chr3R 20901811 intergenic CG5621 + chr3R_20_20900001 chr3R_20900001 RAL-340_100b 3175 chr3R 20966124 20966155 chr3R 20966219 20966237 4 97 2.0 5.5 3.8 0.8 113 chr3R 20966124 intron Atpalpha + chr3R 20966180 intron Atpalpha + chr3R 20966237 intron Atpalpha + chr3R_4_20965001 chr3R_20965001 RAL-340_100b 3176 chr3R 21014008 21014035 chr3R 21014103 21014138 7 98 10.0 9.5 9.8 0.6 130 chr3R 21014008 3` UTR Calx + chr3R 21014073 3` UTR Calx + chr3R 21014138 3` UTR Calx + chr3R_7_21010001 chr3R_21010001 RAL-340_100b 3177 chr3R 21014037 21014043 chr3R 21014090 21014095 4 62 10.0 8.0 9.0 0.4 58 chr3R 21014037 3` UTR Calx + chr3R 21014066 3` UTR Calx + chr3R 21014095 3` UTR Calx + chr3R_4_21010001 chr3R_21010001 RAL-340_100b 3178 chr3R 21074817 21074819 chr3R 21075034 21075065 4 238 10.5 11.5 11.0 0.3 248 chr3R 21074817 intron dmrt93B + chr3R 21074941 intron dmrt93B + chr3R 21075065 intron dmrt93B + chr3R_4_21070001 chr3R_21070001 RAL-340_100b 3179 chr3R 21076292 21076329 chr3R 21076396 21076433 5 104 1.5 4.0 2.8 1.3 141 chr3R 21076292 exon dmrt93B + chr3R 21076362 intron dmrt93B + chr3R 21076433 intron dmrt93B + chr3R_5_21075001 chr3R_21075001 RAL-340_100b 3180 chr3R 21108021 21108053 chr3R 21108307 21108339 13 285 7.0 8.0 7.5 1.5 318 chr3R 21108021 intergenic Sec15 -,rtet + chr3R 21108180 intergenic Sec15 -,rtet + chr3R 21108339 intergenic rtet +,Sec15 - chr3R_13_21105001 chr3R_21105001 RAL-340_100b 3181 chr3R 21141656 21141680 chr3R 21150157 21150186 Tirant 21 8502 18.0 12.0 15.0 1.3 8530 chr3R 21141656 intron SNF4Agamma + chr3R 21145921 intron SNF4Agamma + chr3R 21150186 intron SNF4Agamma + chr3R_21_21145001 chr3R_21145001 RAL-340_100b 3182 chr3R 21141682 21141692 chr3R 21150153 21150183 Tirant 5 8488 14.0 10.5 12.2 0.4 8501 chr3R 21141682 intron SNF4Agamma + chr3R 21145932 intron SNF4Agamma + chr3R 21150183 intron SNF4Agamma + chr3R_5_21145001 chr3R_21145001 RAL-340_100b 3183 chr3R 21154547 21154584 chr3R 21154785 21154799 18 237 12.5 8.0 10.2 1.6 252 chr3R 21154547 intron SNF4Agamma + chr3R 21154673 intron SNF4Agamma + chr3R 21154799 intron SNF4Agamma + chr3R_18_21150001 chr3R_21150001 RAL-340_100b 3184 chr3R 21245832 21245866 chr3R 21245936 21245975 22 107 9.0 4.0 6.5 2.9 143 chr3R 21245832 intergenic CG5892 + chr3R 21245904 intergenic CG5892 + chr3R 21245975 intergenic not near genes chr3R_22_21245001 chr3R_21245001 RAL-340_100b 3185 chr3R 21310081 21310087 chr3R 21313711 21313717 6 3630 13.0 32.0 22.5 0.3 3636 chr3R 21310081 5` UTR Hsromega + chr3R 21311899 5` UTR Hsromega + chr3R 21313717 5` UTR Hsromega + chr3R_6_21310001 chr3R_21310001 RAL-340_100b 3186 chr3R 21310092 21310106 chr3R 21310213 21310225 9 121 9.0 16.5 12.8 0.7 133 chr3R 21310092 5` UTR Hsromega + chr3R 21310158 5` UTR Hsromega + chr3R 21310225 5` UTR Hsromega + chr3R_9_21310001 chr3R_21310001 RAL-340_100b 3187 chr3R 21310107 21310122 chr3R 21310219 21310244 6 117 6.0 19.5 12.8 0.4 137 chr3R 21310107 5` UTR Hsromega + chr3R 21310176 5` UTR Hsromega + chr3R 21310244 5` UTR Hsromega + chr3R_6_21310001 chr3R_21310001 RAL-340_100b 3188 chr3R 21310921 21311011 chr3R 21314445 21314548 4 3530 24.0 0.0 12.0 0.3 3627 chr3R 21310921 5` UTR Hsromega + chr3R 21312734 5` UTR Hsromega + chr3R 21314548 5` UTR Hsromega + chr3R_4_21310001 chr3R_21310001 RAL-340_100b 3189 chr3R 21326808 21326841 chr3R 21907534 21907536 4 580718 74.0 58.5 66.2 0.1 580728 chr3R 21326808 intron CG16791 - chr3R 21617172 intron InR - chr3R 21907536 intergenic CG6678 + chr3R_4_21615001 chr3R_21615001 RAL-340_100b 3190 chr3R 21408509 21408528 chr3R 21408611 21408630 8 102 14.0 5.5 9.8 0.7 121 chr3R 21408509 intergenic CheB93a + chr3R 21408570 intergenic CheB93a + chr3R 21408630 intergenic CheB93a +,CheB93b + chr3R_8_21405001 chr3R_21405001 RAL-340_100b 3191 chr3R 21408531 21408544 chr3R 21408628 21408631 4 96 9.0 5.5 7.2 0.5 100 chr3R 21408531 intergenic CheB93a + chr3R 21408581 intergenic CheB93a + chr3R 21408631 intergenic CheB93a +,CheB93b + chr3R_4_21405001 chr3R_21405001 RAL-340_100b 3192 chr3R 21464423 21464429 chr3R 21464505 21464538 5 104 2.0 7.0 4.5 0.9 115 chr3R 21464423 intergenic not near genes chr3R 21464480 intergenic not near genes chr3R 21464538 intergenic not near genes chr3R_5_21460001 chr3R_21460001 RAL-340_100b 3193 chr3R 21471998 21472034 chr3R 21472104 21472135 12 103 7.5 18.0 12.8 0.9 137 chr3R 21471998 intergenic not near genes chr3R 21472066 intergenic not near genes chr3R 21472135 intergenic not near genes chr3R_12_21470001 chr3R_21470001 RAL-340_100b 3194 chr3R 21481361 21481414 chr3R 21481477 21481480 14 108 6.0 0.0 3.0 3.5 119 chr3R 21481361 intergenic not near genes chr3R 21481420 intergenic not near genes chr3R 21481480 intergenic not near genes chr3R_14_21480001 chr3R_21480001 RAL-340_100b 3195 chr3R 21506853 21506914 chr3R 21506964 21507019 11 109 0.5 4.0 2.2 3.4 166 chr3R 21506853 intron C15 + chr3R 21506936 intron C15 + chr3R 21507019 intron C15 + chr3R_11_21505001 chr3R_21505001 RAL-340_100b 3196 chr3R 21518001 21518272 chr3R 21518155 21518376 5 135 0.0 0.0 0.0 5.0 375 chr3R 21518001 intergenic not near genes chr3R 21518188 intergenic not near genes chr3R 21518376 intergenic not near genes chr3R_5_21515001 chr3R_21515001 RAL-340_100b 3197 chr3R 21519961 21520129 chr3R 21520087 21520248 33 120 5.5 5.5 5.5 5.1 287 chr3R 21519961 intergenic not near genes chr3R 21520104 intergenic not near genes chr3R 21520248 intergenic not near genes chr3R_33_21520001 chr3R_21520001 RAL-340_100b 3198 chr3R 21554020 21554185 chr3R 21907535 21907535 4 353466 56.0 59.0 57.5 0.1 353515 chr3R 21554020 intron slou - chr3R 21730778 intergenic not near genes chr3R 21907535 intergenic CG6678 + chr3R_4_21730001 chr3R_21730001 RAL-340_100b 3199 chr3R 21567824 21567853 chr3R 21567924 21567925 4 97 6.5 0.0 3.2 1.0 101 chr3R 21567824 exon CG15498 - chr3R 21567874 intron CG15498 - chr3R 21567925 intron CG15498 - chr3R_4_21565001 chr3R_21565001 RAL-340_100b 3200 chr3R 21600219 21600272 chr3R 21600322 21600375 8 100 0.5 12.5 6.5 1.1 156 chr3R 21600219 intron InR - chr3R 21600297 intron InR - chr3R 21600375 intron InR - chr3R_8_21600001 chr3R_21600001 RAL-340_100b 3201 chr3R 21608988 21608995 chr3R 21611647 21611654 NOF 5 2658 25.0 12.0 18.5 0.3 2666 chr3R 21608988 intron InR - chr3R 21610321 intron InR - chr3R 21611654 intron InR - chr3R_5_21610001 chr3R_21610001 RAL-340_100b 3202 chr3R 21608996 21609007 chr3R 21611646 21611657 NOF 10 2654 20.5 11.5 16.0 0.6 2661 chr3R 21608996 intron InR - chr3R 21610326 intron InR - chr3R 21611657 intron InR - chr3R_10_21610001 chr3R_21610001 RAL-340_100b 3203 chr3R 21609019 21609036 chr3R 21611648 21611695 NOF 15 2654 11.5 12.0 11.8 1.2 2676 chr3R 21609019 intron InR - chr3R 21610357 intron InR - chr3R 21611695 intron InR - chr3R_15_21610001 chr3R_21610001 RAL-340_100b 3204 chr3R 21624078 21624097 chr3R 21624197 21624216 19 118 15.0 16.5 15.8 1.1 138 chr3R 21624078 exon E2f - chr3R 21624147 intron E2f - chr3R 21624216 intron E2f - chr3R_19_21620001 chr3R_21620001 RAL-340_100b 3205 chr3R 21624098 21624121 chr3R 21624196 21624240 23 113 7.5 16.5 12.0 1.8 142 chr3R 21624098 intron E2f - chr3R 21624169 intron E2f - chr3R 21624240 intron E2f - chr3R_23_21620001 chr3R_21620001 RAL-340_100b 3206 chr3R 21725667 21725682 chr3R 21725828 21725843 4 161 0.5 10.5 5.5 0.6 176 chr3R 21725667 intergenic not near genes chr3R 21725755 intergenic not near genes chr3R 21725843 intergenic not near genes chr3R_4_21725001 chr3R_21725001 RAL-340_100b 3207 chr3R 21734843 21734950 chr3R 21734944 21735065 11 97 2.5 2.5 2.5 3.1 222 chr3R 21734843 intergenic not near genes chr3R 21734954 intergenic not near genes chr3R 21735065 intergenic not near genes chr3R_11_21730001 chr3R_21730001 RAL-340_100b 3208 chr3R 21751135 21751192 chr3R 21753906 21753963 15 2775 60.0 55.0 57.5 0.3 2828 chr3R 21751135 exon CG31233 + chr3R 21752549 exon CG31233 + chr3R 21753963 intergenic CG31198 + chr3R_15_21750001 chr3R_21750001 RAL-340_100b 3209 chr3R 21761100 21761153 chr3R 21768512 21768570 mdg1 16 7413 11.0 6.0 8.5 1.7 7470 chr3R 21761100 exon CG42335 + chr3R 21764835 intron CG42335 + chr3R 21768570 exon CG42335 + chr3R_16_21760001 chr3R_21760001 RAL-340_100b 3210 chr3R 21784818 21784870 chr3R 21784921 21784929 23 97 5.5 5.0 5.2 3.7 111 chr3R 21784818 3` UTR,3` UTR CASK -,CRG - chr3R 21784874 3` UTR,3` UTR CASK -,CRG - chr3R 21784929 3` UTR,3` UTR CASK -,CRG - chr3R_23_21780001 chr3R_21780001 RAL-340_100b 3211 chr3R 21907391 21907398 chr3R 21919776 21919805 6 12405 86.5 41.5 64.0 0.1 12414 chr3R 21907391 intergenic CG6678 + chr3R 21913598 intergenic CG6690 +,CG17843 + chr3R 21919805 intergenic not near genes chr3R_6_21910001 chr3R_21910001 RAL-340_100b 3212 chr3R 4542414 4542515 chr3R 21907534 21907534 10 17365083 76.0 58.5 67.2 0.1 17365120 chr3R 4542414 intron,exon CG34357 -,Mur82C + chr3R 13224974 intron Ace - chr3R 21907534 intergenic CG6678 + chr3R_10_13220001 chr3R_13220001 RAL-340_100b 3213 chr3R 5019644 5019663 chr3R 21907534 21907534 4 16887881 128.5 58.5 93.5 0.0 16887890 chr3R 5019644 intron CR45585 + chr3R 13463589 3` UTR,intron CG14372 +,CR17025 - chr3R 21907534 intergenic CG6678 + chr3R_4_13460001 chr3R_13460001 RAL-340_100b 3214 chr3R 6308172 6308418 chr3R 21907534 21907534 4 15599283 120.5 58.5 89.5 0.0 15599362 chr3R 6308172 exon CG31556 - chr3R 14107853 5` UTR CG12402 - chr3R 21907534 intergenic CG6678 + chr3R_4_14105001 chr3R_14105001 RAL-340_100b 3215 chr3R 6414155 6414261 chr3R 21907534 21907534 6 15493305 136.5 58.5 97.5 0.1 15493379 chr3R 6414155 intron gpp + chr3R 14160844 intergenic not near genes chr3R 21907534 intergenic CG6678 + chr3R_6_14160001 chr3R_14160001 RAL-340_100b 3216 chr3R 7669670 7669710 chr3R 21907534 21907534 5 14237834 63.0 58.5 60.8 0.1 14237864 chr3R 7669670 intron Nlg1 + chr3R 14788602 exon jvl + chr3R 21907534 intergenic CG6678 + chr3R_5_14785001 chr3R_14785001 RAL-340_100b 3217 chr3R 8339246 8339254 chr3R 21907534 21907534 43 13568287 40.5 58.5 49.5 0.9 13568288 chr3R 8339246 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907534 intergenic CG6678 + chr3R_43_15120001 chr3R_15120001 RAL-340_100b 3218 chr3R 8475476 8475527 chr3R 21907534 21907534 5 13432036 109.5 58.5 84.0 0.1 13432058 chr3R 8475476 intron CG45263 - chr3R 15191505 exon CG6752 - chr3R 21907534 intergenic CG6678 + chr3R_5_15190001 chr3R_15190001 RAL-340_100b 3219 chr3R 8639140 8639354 chr3R 21907534 21907534 4 13268275 46.0 58.5 52.2 0.1 13268394 chr3R 8639140 intergenic not near genes chr3R 15273337 exon Cp190 - chr3R 21907534 intergenic CG6678 + chr3R_4_15270001 chr3R_15270001 RAL-340_100b 3220 chr3R 9144225 9144255 chr3R 21907534 21907534 4 12763300 92.5 58.5 75.5 0.1 12763309 chr3R 9144225 intron pum - chr3R 15525880 intergenic not near genes chr3R 21907534 intergenic CG6678 + chr3R_4_15525001 chr3R_15525001 RAL-340_100b 3221 chr3R 9450956 9451163 chr3R 21907534 21907534 7 12456433 71.5 58.5 65.0 0.1 12456578 chr3R 9450956 3` UTR ps + chr3R 15679245 exon pxb + chr3R 21907534 intergenic CG6678 + chr3R_7_15675001 chr3R_15675001 RAL-340_100b 3222 chr3R 9522834 9522879 chr3R 21907534 21907534 4 12384678 100.0 58.5 79.2 0.0 12384700 chr3R 9522834 exon CG8176 + chr3R 15715184 intergenic CG31294 - chr3R 21907534 intergenic CG6678 + chr3R_4_15715001 chr3R_15715001 RAL-340_100b 3223 chr3R 9620954 9621010 chr3R 21907534 21907534 25 12286568 24.0 58.5 41.2 0.6 12286580 chr3R 9620954 intron CG8312 + chr3R 15764244 intergenic not near genes chr3R 21907534 intergenic CG6678 + chr3R_25_15760001 chr3R_15760001 RAL-340_100b 3224 chr3R 10691022 10691038 chr3R 21907534 21907534 4 11216506 107.0 58.5 82.8 0.0 11216512 chr3R 10691022 intron Skeletor + chr3R 16299278 intron gish + chr3R 21907534 intergenic CG6678 + chr3R_4_16295001 chr3R_16295001 RAL-340_100b 3225 chr3R 10993121 10993140 chr3R 21907534 21907534 4 10914406 86.0 58.5 72.2 0.1 10914413 chr3R 10993121 5` UTR CG34114 + chr3R 16450328 intron Pak3 - chr3R 21907534 intergenic CG6678 + chr3R_4_16450001 chr3R_16450001 RAL-340_100b 3226 chr3R 11013077 11013094 chr3R 21907534 21907534 4 10894447 79.0 58.5 68.8 0.1 10894457 chr3R 11013077 intron CG34114 + chr3R 16460306 exon CG42232 - chr3R 21907534 intergenic CG6678 + chr3R_4_16460001 chr3R_16460001 RAL-340_100b 3227 chr3R 11670294 11670401 chr3R 21907534 21907534 4 10237188 107.0 58.5 82.8 0.0 10237240 chr3R 11670294 exon CG42327 + chr3R 16788914 exon Glut3 + chr3R 21907534 intergenic CG6678 + chr3R_4_16785001 chr3R_16785001 RAL-340_100b 3228 chr3R 12311679 12311859 chr3R 21907534 21907534 5 9595754 102.5 58.5 80.5 0.1 9595855 chr3R 12311679 exon CG4066 + chr3R 17109606 intron cher - chr3R 21907534 intergenic CG6678 + chr3R_5_17105001 chr3R_17105001 RAL-340_100b 3229 chr3R 12312026 12312245 chr3R 21907534 21907534 6 9595393 61.0 58.5 59.8 0.1 9595508 chr3R 12312026 exon CG4066 + chr3R 17109780 intron cher - chr3R 21907534 intergenic CG6678 + chr3R_6_17105001 chr3R_17105001 RAL-340_100b 3230 chr3R 13064096 13064270 chr3R 21907534 21907534 7 8843367 68.5 58.5 63.5 0.1 8843438 chr3R 13064096 intron sim + chr3R 17485815 intron Dscam3 - chr3R 21907534 intergenic CG6678 + chr3R_7_17485001 chr3R_17485001 RAL-340_100b 3231 chr3R 13104419 13104420 chr3R 21907534 21907534 11 8803114 114.0 58.5 86.2 0.1 8803115 chr3R 13104419 intron timeout + chr3R 17505976 intergenic Dscam3 - chr3R 21907534 intergenic CG6678 + chr3R_11_17505001 chr3R_17505001 RAL-340_100b 3232 chr3R 13693028 13693028 chr3R 21907534 21907534 16 8214506 71.0 58.5 64.8 0.2 8214506 chr3R 13693028 3` UTR flfl + chr3R 17800281 exon CG17803 - chr3R 21907534 intergenic CG6678 + chr3R_16_17800001 chr3R_17800001 RAL-340_100b 3233 chr3R 15154247 15154281 chr3R 21907534 21907534 4 6753272 93.0 58.5 75.8 0.1 6753287 chr3R 15154247 intron Gyc88E + chr3R 18530890 intron fru - chr3R 21907534 intergenic CG6678 + chr3R_4_18530001 chr3R_18530001 RAL-340_100b 3234 chr3R 15286987 15286988 chr3R 21907534 21907534 22 6620546 61.5 58.5 60.0 0.4 6620547 chr3R 15286987 intron Tm1 + chr3R 18597260 intron,exon qin +,CG14304 - chr3R 21907534 intergenic CG6678 + chr3R_22_18595001 chr3R_18595001 RAL-340_100b 3235 chr3R 15600740 15601024 chr3R 21907534 21907534 5 6306623 88.0 58.5 73.2 0.1 6306794 chr3R 15600740 intergenic not near genes chr3R 18754137 exon CG14299 - chr3R 21907534 intergenic CG6678 + chr3R_5_18750001 chr3R_18750001 RAL-340_100b 3236 chr3R 15798557 15798756 chr3R 21907534 21907534 5 6108883 116.0 58.5 87.2 0.1 6108977 chr3R 15798557 intron nsl1 + chr3R 18853046 intergenic not near genes chr3R 21907534 intergenic CG6678 + chr3R_5_18850001 chr3R_18850001 RAL-340_100b 3237 chr3R 15801081 15801268 chr3R 21907534 21907534 5 6106415 44.0 58.5 51.2 0.1 6106453 chr3R 15801081 3` UTR nsl1 + chr3R 18854308 intergenic not near genes chr3R 21907534 intergenic CG6678 + chr3R_5_18850001 chr3R_18850001 RAL-340_100b 3238 chr3R 16214250 16214403 chr3R 21907534 21907534 7 5693169 100.0 58.5 79.2 0.1 5693284 chr3R 16214250 intergenic CR45641 +,CR45642 + chr3R 19060892 intron cdi - chr3R 21907534 intergenic CG6678 + chr3R_7_19060001 chr3R_19060001 RAL-340_100b 3239 chr3R 16696451 16696559 chr3R 21907534 21907534 4 5211012 58.0 58.5 58.2 0.1 5211083 chr3R 16696451 intron Ubx - chr3R 19301992 intergenic not near genes chr3R 21907534 intergenic CG6678 + chr3R_4_19300001 chr3R_19300001 RAL-340_100b 3240 chr3R 17346245 17346247 chr3R 21907534 21907534 7 4561288 33.5 58.5 46.0 0.1 4561289 chr3R 17346245 intron beat-IIa - chr3R 19626890 intron CG6231 - chr3R 21907534 intergenic CG6678 + chr3R_7_19625001 chr3R_19625001 RAL-340_100b 3241 chr3R 17998933 17999024 chr3R 21907534 21907534 5 3908536 91.0 58.5 74.8 0.1 3908601 chr3R 17998933 intron cpo + chr3R 19953234 intron Hs6st - chr3R 21907534 intergenic CG6678 + chr3R_5_19950001 chr3R_19950001 RAL-340_100b 3242 chr3R 18130649 18130806 chr3R 21907534 21907534 7 3776821 194.5 58.5 126.5 0.1 3776885 chr3R 18130649 exon sr + chr3R 20019092 exon CG4433 - chr3R 21907534 intergenic CG6678 + chr3R_7_20015001 chr3R_20015001 RAL-340_100b 3243 chr3R 18131056 18131076 chr3R 21907534 21907534 8 3776469 129.0 58.5 93.8 0.1 3776478 chr3R 18131056 exon sr + chr3R 20019295 exon CG4433 - chr3R 21907534 intergenic CG6678 + chr3R_8_20015001 chr3R_20015001 RAL-340_100b 3244 chr3R 19691937 19692041 chr3R 21907534 21907534 7 2215579 40.5 58.5 49.5 0.1 2215597 chr3R 19691937 intron Naam + chr3R 20799736 intron Syp + chr3R 21907534 intergenic CG6678 + chr3R_7_20795001 chr3R_20795001 RAL-340_100b 3245 chr3R 20297549 20297781 chr3R 21907534 21907534 5 1609801 69.5 58.5 64.0 0.1 1609985 chr3R 20297549 intron cic + chr3R 21102542 exon CG5745 + chr3R 21907534 intergenic CG6678 + chr3R_5_21100001 chr3R_21100001 RAL-340_100b 3246 chr3R 20973949 20974064 chr3R 21907534 21907534 4 933524 162.5 58.5 110.5 0.0 933585 chr3R 20973949 3` UTR Atpalpha + chr3R 21440742 intergenic not near genes chr3R 21907534 intergenic CG6678 + chr3R_4_21440001 chr3R_21440001 RAL-340_100b 3247 chr3R 20974564 20974602 chr3R 21907534 21907534 5 932949 129.0 58.5 93.8 0.1 932970 chr3R 20974564 3` UTR Atpalpha + chr3R 21441049 intergenic not near genes chr3R 21907534 intergenic CG6678 + chr3R_5_21440001 chr3R_21440001 RAL-340_100b 3248 chr3R 21836180 21836256 chr3R 21907534 21907534 6 71299 96.5 58.5 77.5 0.1 71354 chr3R 21836180 intergenic not near genes chr3R 21871857 intron CG31431 + chr3R 21907534 intergenic CG6678 + chr3R_6_21870001 chr3R_21870001 RAL-340_100b 3249 chr3R 21907534 21907534 chr3R 22011430 22011542 5 103961 64.0 94.5 79.2 0.1 104008 chr3R 21907534 intergenic CG6678 + chr3R 21959538 intron Eip93F + chr3R 22011542 intergenic not near genes chr3R_5_21955001 chr3R_21955001 RAL-340_100b 3250 chr3R 21907534 21907534 chr3R 22516146 22516292 5 608701 64.0 65.0 64.5 0.1 608758 chr3R 21907534 intergenic CG6678 + chr3R 22211913 intron,5` UTR SKIP +,Gld2 + chr3R 22516292 intron Octbeta1R + chr3R_5_22210001 chr3R_22210001 RAL-340_100b 3251 chr3R 21907534 21907534 chr3R 22824963 22825205 5 917482 64.0 76.0 70.0 0.1 917671 chr3R 21907534 intergenic CG6678 + chr3R 22366370 exon CG5380 - chr3R 22825205 3` UTR CR44350 - chr3R_5_22365001 chr3R_22365001 RAL-340_100b 3252 chr3R 21907534 21907534 chr3R 24180923 24181117 9 2273500 64.0 98.5 81.2 0.1 2273583 chr3R 21907534 intergenic CG6678 + chr3R 23044326 exon CG13837 + chr3R 24181117 intron CG13606 + chr3R_9_23040001 chr3R_23040001 RAL-340_100b 3253 chr3R 21907534 21907534 chr3R 24248687 24248716 4 2341166 64.0 121.0 92.5 0.0 2341182 chr3R 21907534 intergenic CG6678 + chr3R 23078125 intron CG13830 - chr3R 24248716 3` UTR mask + chr3R_4_23075001 chr3R_23075001 RAL-340_100b 3254 chr3R 21907534 21907534 chr3R 24389465 24389465 17 2481931 64.0 23.5 43.8 0.4 2481931 chr3R 21907534 intergenic CG6678 + chr3R 23148500 intergenic not near genes chr3R 24389465 intron CG5768 - chr3R_17_23145001 chr3R_23145001 RAL-340_100b 3255 chr3R 21907534 21907534 chr3R 24520566 24520599 4 2613044 64.0 108.0 86.0 0.0 2613065 chr3R 21907534 intergenic CG6678 + chr3R 23214066 intron cnc - chr3R 24520599 3` UTR Pp1alpha-96A + chr3R_4_23210001 chr3R_23210001 RAL-340_100b 3256 chr3R 21907534 21907534 chr3R 25710613 25710641 5 3803095 64.0 98.0 81.0 0.1 3803107 chr3R 21907534 intergenic CG6678 + chr3R 23809088 intron,intron,3` UTR CG33111 -,CG34355 +,eIF4G2 - chr3R 25710641 intron LpR2 - chr3R_5_23805001 chr3R_23805001 RAL-340_100b 3257 chr3R 21907534 21907534 chr3R 26659332 26659337 18 4751800 64.0 63.0 63.5 0.3 4751803 chr3R 21907534 intergenic CG6678 + chr3R 24283436 intergenic CR45662 - chr3R 26659337 intron beat-VII - chr3R_18_24280001 chr3R_24280001 RAL-340_100b 3258 chr3R 21907534 21907534 chr3R 26731087 26731262 4 4823672 64.0 109.5 86.8 0.0 4823728 chr3R 21907534 intergenic CG6678 + chr3R 24319398 intron BRWD3 + chr3R 26731262 intergenic not near genes chr3R_4_24315001 chr3R_24315001 RAL-340_100b 3259 chr3R 21907534 21907534 chr3R 27290783 27290920 4 5383314 64.0 177.5 120.8 0.0 5383386 chr3R 21907534 intergenic CG6678 + chr3R 24599227 intron mld + chr3R 27290920 exon Hmu + chr3R_4_24595001 chr3R_24595001 RAL-340_100b 3260 chr3R 21907534 21907534 chr3R 27359934 27359983 4 5452422 64.0 141.5 102.8 0.0 5452449 chr3R 21907534 intergenic CG6678 + chr3R 24633758 3` UTR atl + chr3R 27359983 intron CG42534 + chr3R_4_24630001 chr3R_24630001 RAL-340_100b 3261 chr3R 21907534 21907534 chr3R 27499989 27499995 10 5592459 64.0 63.5 63.8 0.2 5592461 chr3R 21907534 intergenic CG6678 + chr3R 24703764 intron slo + chr3R 27499995 intergenic not near genes chr3R_10_24700001 chr3R_24700001 RAL-340_100b 3262 chr3R 21907534 21907534 chr3R 27856640 27856676 6 5949121 64.0 119.5 91.8 0.1 5949142 chr3R 21907534 intergenic CG6678 + chr3R 24882105 exon CG31121 - chr3R 27856676 intron CG34353 - chr3R_6_24880001 chr3R_24880001 RAL-340_100b 3263 chr3R 21907534 21907534 chr3R 28240266 28240446 9 6332839 64.0 87.0 75.5 0.1 6332912 chr3R 21907534 intergenic CG6678 + chr3R 25073990 intron CG9996 - chr3R 28240446 3` UTR CG34354 + chr3R_9_25070001 chr3R_25070001 RAL-340_100b 3264 chr3R 21907534 21907534 chr3R 28773443 28773470 4 6865918 64.0 154.5 109.2 0.0 6865936 chr3R 21907534 intergenic CG6678 + chr3R 25340502 exon rha + chr3R 28773470 intergenic not near genes chr3R_4_25340001 chr3R_25340001 RAL-340_100b 3265 chr3R 21907534 21907534 chr3R 28831798 28831860 148 6924268 64.0 70.5 67.2 2.2 6924326 chr3R 21907534 intergenic CG6678 + chr3R 25369697 intron Fur1 - chr3R 28831860 5` UTR WASp - chr3R_148_25365001 chr3R_25365001 RAL-340_100b 3266 chr3R 21907534 21907534 chr3R 29013339 29013340 21 7105806 64.0 38.5 51.2 0.4 7105806 chr3R 21907534 intergenic CG6678 + chr3R 25460437 intron Fur1 - chr3R 29013340 intron wat - chr3R_21_25460001 chr3R_25460001 RAL-340_100b 3267 chr3R 21907534 21907534 chr3R 29089577 29089634 8 7182070 64.0 93.0 78.5 0.1 7182100 chr3R 21907534 intergenic CG6678 + chr3R 25498584 intergenic not near genes chr3R 29089634 intron CG11873 + chr3R_8_25495001 chr3R_25495001 RAL-340_100b 3268 chr3R 21907534 21907534 chr3R 29207964 29207975 4 7300434 64.0 120.5 92.2 0.0 7300441 chr3R 21907534 intergenic CG6678 + chr3R 25557754 intron msi + chr3R 29207975 intergenic not near genes chr3R_4_25555001 chr3R_25555001 RAL-340_100b 3269 chr3R 21907534 21907534 chr3R 30547135 30547294 4 8639654 64.0 102.0 83.0 0.0 8639760 chr3R 21907534 intergenic CG6678 + chr3R 26227414 intergenic not near genes chr3R 30547294 intron tmod + chr3R_4_26225001 chr3R_26225001 RAL-340_100b 3270 chr3R 21907534 21907534 chr3R 31428352 31428366 4 9520824 64.0 92.5 78.2 0.1 9520832 chr3R 21907534 intergenic CG6678 + chr3R 26667950 intron beat-VII - chr3R 31428366 intron Gprk2 + chr3R_4_26665001 chr3R_26665001 RAL-340_100b 3271 chr3R 4542415 4542486 chr3R 21907535 21907535 5 17365101 109.5 59.0 84.2 0.1 17365120 chr3R 4542415 intron,exon CG34357 -,Mur82C + chr3R 13224975 intron Ace - chr3R 21907535 intergenic CG6678 + chr3R_5_13220001 chr3R_13220001 RAL-340_100b 3272 chr3R 5678317 5678547 chr3R 21907535 21907535 4 16229068 48.5 59.0 53.8 0.1 16229218 chr3R 5678317 exon Atg17 + chr3R 13792926 intergenic not near genes chr3R 21907535 intergenic CG6678 + chr3R_4_13790001 chr3R_13790001 RAL-340_100b 3273 chr3R 7103706 7103722 chr3R 21907535 21907535 4 14803817 119.0 59.0 89.0 0.0 14803829 chr3R 7103706 intron Alh - chr3R 14505620 intron CR44177 + chr3R 21907535 intergenic CG6678 + chr3R_4_14505001 chr3R_14505001 RAL-340_100b 3274 chr3R 8339242 8339272 chr3R 21907535 21907535 37 13568288 40.0 59.0 49.5 0.7 13568293 chr3R 8339242 intergenic not near genes chr3R 15123388 intron CG42788 - chr3R 21907535 intergenic CG6678 + chr3R_37_15120001 chr3R_15120001 RAL-340_100b 3275 chr3R 9450900 9451161 chr3R 21907535 21907535 4 12456557 72.0 59.0 65.5 0.1 12456635 chr3R 9450900 3` UTR ps + chr3R 15679218 exon pxb + chr3R 21907535 intergenic CG6678 + chr3R_4_15675001 chr3R_15675001 RAL-340_100b 3276 chr3R 9620954 9621004 chr3R 21907535 21907535 41 12286574 21.0 59.0 40.0 1.0 12286581 chr3R 9620954 intron CG8312 + chr3R 15764244 intergenic not near genes chr3R 21907535 intergenic CG6678 + chr3R_41_15760001 chr3R_15760001 RAL-340_100b 3277 chr3R 9851571 9851801 chr3R 21907535 21907535 4 12055893 41.5 59.0 50.2 0.1 12055964 chr3R 9851571 intron Teh1 - chr3R 15879553 intergenic not near genes chr3R 21907535 intergenic CG6678 + chr3R_4_15875001 chr3R_15875001 RAL-340_100b 3278 chr3R 11005255 11005282 chr3R 21907535 21907535 4 10902264 78.5 59.0 68.8 0.1 10902280 chr3R 11005255 intron CG34114 + chr3R 16456395 intron CG14883 + chr3R 21907535 intergenic CG6678 + chr3R_4_16455001 chr3R_16455001 RAL-340_100b 3279 chr3R 11670215 11670437 chr3R 21907535 21907535 7 10237221 89.0 59.0 74.0 0.1 10237320 chr3R 11670215 exon CG42327 + chr3R 16788875 exon Glut3 + chr3R 21907535 intergenic CG6678 + chr3R_7_16785001 chr3R_16785001 RAL-340_100b 3280 chr3R 12311842 12312077 chr3R 21907535 21907535 4 9595580 79.0 59.0 69.0 0.1 9595693 chr3R 12311842 exon CG4066 + chr3R 17109688 intron cher - chr3R 21907535 intergenic CG6678 + chr3R_4_17105001 chr3R_17105001 RAL-340_100b 3281 chr3R 13104419 13104420 chr3R 21907535 21907535 4 8803116 114.0 59.0 86.5 0.0 8803116 chr3R 13104419 intron timeout + chr3R 17505977 intergenic Dscam3 - chr3R 21907535 intergenic CG6678 + chr3R_4_17505001 chr3R_17505001 RAL-340_100b 3282 chr3R 13693028 13693030 chr3R 21907535 21907535 8 8214507 71.5 59.0 65.2 0.1 8214507 chr3R 13693028 3` UTR flfl + chr3R 17800282 exon CG17803 - chr3R 21907535 intergenic CG6678 + chr3R_8_17800001 chr3R_17800001 RAL-340_100b 3283 chr3R 15286987 15286989 chr3R 21907535 21907535 4 6620547 61.5 59.0 60.2 0.1 6620548 chr3R 15286987 intron Tm1 + chr3R 18597261 intron,exon qin +,CG14304 - chr3R 21907535 intergenic CG6678 + chr3R_4_18595001 chr3R_18595001 RAL-340_100b 3284 chr3R 15798559 15798773 chr3R 21907535 21907535 4 6108900 118.5 59.0 88.8 0.0 6108976 chr3R 15798559 intron nsl1 + chr3R 18853047 intergenic not near genes chr3R 21907535 intergenic CG6678 + chr3R_4_18850001 chr3R_18850001 RAL-340_100b 3285 chr3R 15801082 15801105 chr3R 21907535 21907535 4 6106440 76.0 59.0 67.5 0.1 6106453 chr3R 15801082 3` UTR nsl1 + chr3R 18854308 intergenic not near genes chr3R 21907535 intergenic CG6678 + chr3R_4_18850001 chr3R_18850001 RAL-340_100b 3286 chr3R 16142740 16142776 chr3R 21907535 21907535 4 5764771 108.0 59.0 83.5 0.0 5764795 chr3R 16142740 exon Sb + chr3R 19025138 exon CG14285 + chr3R 21907535 intergenic CG6678 + chr3R_4_19025001 chr3R_19025001 RAL-340_100b 3287 chr3R 16214378 16214409 chr3R 21907535 21907535 4 5693141 98.0 59.0 78.5 0.1 5693157 chr3R 16214378 5` UTR CR45641 + chr3R 19060956 intron cdi - chr3R 21907535 intergenic CG6678 + chr3R_4_19060001 chr3R_19060001 RAL-340_100b 3288 chr3R 18130515 18130802 chr3R 21907535 21907535 5 3776832 192.0 59.0 125.5 0.0 3777020 chr3R 18130515 exon sr + chr3R 20019025 exon CG4433 - chr3R 21907535 intergenic CG6678 + chr3R_5_20015001 chr3R_20015001 RAL-340_100b 3289 chr3R 19754415 19754585 chr3R 21907535 21907535 4 2152997 35.0 59.0 47.0 0.1 2153120 chr3R 19754415 intron GluClalpha + chr3R 20830975 intergenic CG31223 +,AdSS - chr3R 21907535 intergenic CG6678 + chr3R_4_20830001 chr3R_20830001 RAL-340_100b 3290 chr3R 20285099 20285210 chr3R 21907535 21907535 4 1622357 80.5 59.0 69.8 0.1 1622436 chr3R 20285099 intron cic + chr3R 21096317 intron RhoGAP93B - chr3R 21907535 intergenic CG6678 + chr3R_4_21095001 chr3R_21095001 RAL-340_100b 3291 chr3R 21836182 21836257 chr3R 21907535 21907535 4 71330 96.0 59.0 77.5 0.1 71353 chr3R 21836182 intergenic not near genes chr3R 21871858 intron CG31431 + chr3R 21907535 intergenic CG6678 + chr3R_4_21870001 chr3R_21870001 RAL-340_100b 3292 chr3R 21907535 21907535 chr3R 22011408 22011555 9 103937 64.0 103.5 83.8 0.1 104020 chr3R 21907535 intergenic CG6678 + chr3R 21959545 intron Eip93F + chr3R 22011555 intergenic not near genes chr3R_9_21955001 chr3R_21955001 RAL-340_100b 3293 chr3R 21907535 21907535 chr3R 23599639 23599748 4 1692176 64.0 68.0 66.0 0.1 1692213 chr3R 21907535 intergenic CG6678 + chr3R 22753642 intron,intron CG7029 +,Usp12-46 + chr3R 23599748 intergenic not near genes chr3R_4_22750001 chr3R_22750001 RAL-340_100b 3294 chr3R 21907535 21907535 chr3R 24180900 24181111 10 2273503 64.0 86.5 75.2 0.1 2273576 chr3R 21907535 intergenic CG6678 + chr3R 23044323 exon CG13837 + chr3R 24181111 intron CG13606 + chr3R_10_23040001 chr3R_23040001 RAL-340_100b 3295 chr3R 21907535 21907535 chr3R 24389465 24389465 6 2481930 64.0 23.5 43.8 0.1 2481930 chr3R 21907535 intergenic CG6678 + chr3R 23148500 intergenic not near genes chr3R 24389465 intron CG5768 - chr3R_6_23145001 chr3R_23145001 RAL-340_100b 3296 chr3R 21907535 21907535 chr3R 25710627 25710644 4 3803096 64.0 106.0 85.0 0.0 3803109 chr3R 21907535 intergenic CG6678 + chr3R 23809090 intron,intron,3` UTR CG33111 -,CG34355 +,eIF4G2 - chr3R 25710644 intron LpR2 - chr3R_4_23805001 chr3R_23805001 RAL-340_100b 3297 chr3R 21907535 21907535 chr3R 26659332 26659337 19 4751800 64.0 63.0 63.5 0.3 4751802 chr3R 21907535 intergenic CG6678 + chr3R 24283436 intergenic CR45662 - chr3R 26659337 intron beat-VII - chr3R_19_24280001 chr3R_24280001 RAL-340_100b 3298 chr3R 21907535 21907535 chr3R 27290803 27290893 4 5383322 64.0 200.0 132.0 0.0 5383358 chr3R 21907535 intergenic CG6678 + chr3R 24599214 intron mld + chr3R 27290893 exon Hmu + chr3R_4_24595001 chr3R_24595001 RAL-340_100b 3299 chr3R 21907535 21907535 chr3R 27499988 27499997 17 5592458 64.0 63.0 63.5 0.3 5592462 chr3R 21907535 intergenic CG6678 + chr3R 24703766 intron slo + chr3R 27499997 intergenic not near genes chr3R_17_24700001 chr3R_24700001 RAL-340_100b 3300 chr3R 21907535 21907535 chr3R 28240375 28240424 8 6332848 64.0 107.5 85.8 0.1 6332889 chr3R 21907535 intergenic CG6678 + chr3R 25073980 intron CG9996 - chr3R 28240424 3` UTR CG34354 + chr3R_8_25070001 chr3R_25070001 RAL-340_100b 3301 chr3R 21907535 21907535 chr3R 28763938 28763938 4 6856403 64.0 0.0 32.0 0.1 6856403 chr3R 21907535 intergenic CG6678 + chr3R 25335736 exon CG11902 + chr3R 28763938 intergenic not near genes chr3R_4_25335001 chr3R_25335001 RAL-340_100b 3302 chr3R 21907535 21907535 chr3R 28831798 28831821 203 6924266 64.0 70.5 67.2 3.0 6924286 chr3R 21907535 intergenic CG6678 + chr3R 25369678 intron Fur1 - chr3R 28831821 5` UTR WASp - chr3R_203_25365001 chr3R_25365001 RAL-340_100b 3303 chr3R 21907535 21907535 chr3R 29013339 29013389 12 7105808 64.0 38.5 51.2 0.2 7105854 chr3R 21907535 intergenic CG6678 + chr3R 25460462 intron Fur1 - chr3R 29013389 intron wat - chr3R_12_25460001 chr3R_25460001 RAL-340_100b 3304 chr3R 21907535 21907535 chr3R 29089362 29089599 5 7181976 64.0 69.5 66.8 0.1 7182064 chr3R 21907535 intergenic CG6678 + chr3R 25498567 intergenic not near genes chr3R 29089599 intron CG11873 + chr3R_5_25495001 chr3R_25495001 RAL-340_100b 3305 chr3R 21907535 21907535 chr3R 31677036 31677074 4 9769516 64.0 68.5 66.2 0.1 9769539 chr3R 21907535 intergenic CG6678 + chr3R 26792304 intergenic not near genes chr3R 31677074 exon CG1815 + chr3R_4_26790001 chr3R_26790001 RAL-340_100b 3306 chr3R 4542421 4542492 chr3R 21907536 21907536 4 17365070 100.0 60.0 80.0 0.0 17365115 chr3R 4542421 intron,exon CG34357 -,Mur82C + chr3R 13224978 intron Ace - chr3R 21907536 intergenic CG6678 + chr3R_4_13220001 chr3R_13220001 RAL-340_100b 3307 chr3R 8339242 8339248 chr3R 21907536 21907536 15 13568289 40.0 60.0 50.0 0.3 13568294 chr3R 8339242 intergenic not near genes chr3R 15123389 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_15_15120001 chr3R_15120001 RAL-340_100b 3308 chr3R 9620956 9621021 chr3R 21907536 21907536 20 12286570 29.5 60.0 44.8 0.4 12286580 chr3R 9620956 intron CG8312 + chr3R 15764246 intergenic not near genes chr3R 21907536 intergenic CG6678 + chr3R_20_15760001 chr3R_15760001 RAL-340_100b 3309 chr3R 10491265 10491286 chr3R 21907536 21907536 5 11416264 100.0 60.0 80.0 0.1 11416271 chr3R 10491265 intergenic not near genes chr3R 16199400 exon CG6126 - chr3R 21907536 intergenic CG6678 + chr3R_5_16195001 chr3R_16195001 RAL-340_100b 3310 chr3R 11670300 11670347 chr3R 21907536 21907536 4 10237214 115.0 60.0 87.5 0.0 10237236 chr3R 11670300 exon CG42327 + chr3R 16788918 exon Glut3 + chr3R 21907536 intergenic CG6678 + chr3R_4_16785001 chr3R_16785001 RAL-340_100b 3311 chr3R 11906478 11906594 chr3R 21907536 21907536 5 10000981 112.5 60.0 86.2 0.1 10001058 chr3R 11906478 intron Cad87A - chr3R 16907007 intron iab-8 - chr3R 21907536 intergenic CG6678 + chr3R_5_16905001 chr3R_16905001 RAL-340_100b 3312 chr3R 13427854 13427874 chr3R 21907536 21907536 4 8479674 125.0 60.0 92.5 0.0 8479682 chr3R 13427854 3` UTR Act87E + chr3R 17667695 intron,5` UTR CG14322 +,CR45045 + chr3R 21907536 intergenic CG6678 + chr3R_4_17665001 chr3R_17665001 RAL-340_100b 3313 chr3R 13693028 13693030 chr3R 21907536 21907536 11 8214508 71.5 60.0 65.8 0.2 8214508 chr3R 13693028 3` UTR flfl + chr3R 17800282 exon CG17803 - chr3R 21907536 intergenic CG6678 + chr3R_11_17800001 chr3R_17800001 RAL-340_100b 3314 chr3R 15286987 15286988 chr3R 21907536 21907536 6 6620548 61.5 60.0 60.8 0.1 6620549 chr3R 15286987 intron Tm1 + chr3R 18597262 intron,exon qin +,CG14304 - chr3R 21907536 intergenic CG6678 + chr3R_6_18595001 chr3R_18595001 RAL-340_100b 3315 chr3R 15390178 15390194 chr3R 21907536 21907536 4 6517347 108.0 60.0 84.0 0.0 6517358 chr3R 15390178 intron Rbp + chr3R 18648857 exon qin + chr3R 21907536 intergenic CG6678 + chr3R_4_18645001 chr3R_18645001 RAL-340_100b 3316 chr3R 15798505 15798756 chr3R 21907536 21907536 5 6108926 116.0 60.0 88.0 0.1 6109031 chr3R 15798505 intron nsl1 + chr3R 18853020 intergenic not near genes chr3R 21907536 intergenic CG6678 + chr3R_5_18850001 chr3R_18850001 RAL-340_100b 3317 chr3R 18130652 18130822 chr3R 21907536 21907536 6 3776823 214.0 60.0 137.0 0.0 3776884 chr3R 18130652 exon sr + chr3R 20019094 exon CG4433 - chr3R 21907536 intergenic CG6678 + chr3R_6_20015001 chr3R_20015001 RAL-340_100b 3318 chr3R 19691800 19692023 chr3R 21907536 21907536 7 2215583 55.0 60.0 57.5 0.1 2215736 chr3R 19691800 intron Naam + chr3R 20799668 intron Syp + chr3R 21907536 intergenic CG6678 + chr3R_7_20795001 chr3R_20795001 RAL-340_100b 3319 chr3R 21836199 21836268 chr3R 21907536 21907536 4 71312 88.5 60.0 74.2 0.1 71337 chr3R 21836199 intergenic not near genes chr3R 21871868 intron CG31431 + chr3R 21907536 intergenic CG6678 + chr3R_4_21870001 chr3R_21870001 RAL-340_100b 3320 chr3R 21907536 21907536 chr3R 24180901 24181133 7 2273477 64.0 86.5 75.2 0.1 2273597 chr3R 21907536 intergenic CG6678 + chr3R 23044334 exon CG13837 + chr3R 24181133 intron CG13606 + chr3R_7_23040001 chr3R_23040001 RAL-340_100b 3321 chr3R 21907536 21907536 chr3R 24520578 24520613 4 2613056 64.0 106.0 85.0 0.0 2613077 chr3R 21907536 intergenic CG6678 + chr3R 23214074 intron cnc - chr3R 24520613 3` UTR Pp1alpha-96A + chr3R_4_23210001 chr3R_23210001 RAL-340_100b 3322 chr3R 21907536 21907536 chr3R 26659332 26659337 13 4751798 64.0 63.0 63.5 0.2 4751801 chr3R 21907536 intergenic CG6678 + chr3R 24283436 intergenic CR45662 - chr3R 26659337 intron beat-VII - chr3R_13_24280001 chr3R_24280001 RAL-340_100b 3323 chr3R 21907536 21907536 chr3R 26731244 26731516 4 4823779 64.0 90.5 77.2 0.1 4823980 chr3R 21907536 intergenic CG6678 + chr3R 24319526 intron BRWD3 + chr3R 26731516 intergenic not near genes chr3R_4_24315001 chr3R_24315001 RAL-340_100b 3324 chr3R 21907536 21907536 chr3R 27499989 27499997 15 5592457 64.0 63.5 63.8 0.2 5592461 chr3R 21907536 intergenic CG6678 + chr3R 24703766 intron slo + chr3R 27499997 intergenic not near genes chr3R_15_24700001 chr3R_24700001 RAL-340_100b 3325 chr3R 21907536 21907536 chr3R 28240374 28240381 4 6332841 64.0 109.0 86.5 0.0 6332845 chr3R 21907536 intergenic CG6678 + chr3R 25073958 intron CG9996 - chr3R 28240381 3` UTR CG34354 + chr3R_4_25070001 chr3R_25070001 RAL-340_100b 3326 chr3R 21907536 21907536 chr3R 28831799 28831844 241 6924266 64.0 69.5 66.8 3.6 6924308 chr3R 21907536 intergenic CG6678 + chr3R 25369690 intron Fur1 - chr3R 28831844 5` UTR WASp - chr3R_241_25365001 chr3R_25365001 RAL-340_100b 3327 chr3R 21907536 21907536 chr3R 29013337 29013340 18 7105804 64.0 38.0 51.0 0.3 7105804 chr3R 21907536 intergenic CG6678 + chr3R 25460438 intron Fur1 - chr3R 29013340 intron wat - chr3R_18_25460001 chr3R_25460001 RAL-340_100b 3328 chr3R 21907536 21907536 chr3R 29362455 29362740 7 7455021 64.0 110.5 87.2 0.1 7455204 chr3R 21907536 intergenic CG6678 + chr3R 25635138 intergenic not near genes chr3R 29362740 intergenic not near genes chr3R_7_25635001 chr3R_25635001 RAL-340_100b 3329 chr3R 21983110 21983168 chr3R 21983216 21983244 15 99 7.5 6.5 7.0 1.9 134 chr3R 21983110 intron Eip93F + chr3R 21983177 intron Eip93F + chr3R 21983244 intron Eip93F + chr3R_15_21980001 chr3R_21980001 RAL-340_100b 3330 chr3R 21907534 21907534 chr3R 22011331 22011337 4 103799 64.0 83.0 73.5 0.1 103803 chr3R 21907534 intergenic CG6678 + chr3R 21959436 intron Eip93F + chr3R 22011337 intergenic not near genes chr3R_4_21955001 chr3R_21955001 RAL-340_100b 3331 chr3R 22013042 22013084 chr3R 22013141 22013191 28 105 25.0 12.5 18.8 1.4 149 chr3R 22013042 intergenic not near genes chr3R 22013116 intergenic not near genes chr3R 22013191 intergenic not near genes chr3R_28_22010001 chr3R_22010001 RAL-340_100b 3332 chr3R 22115716 22115756 chr3R 22116015 22116043 9 294 12.0 2.0 7.0 1.1 327 chr3R 22115716 exon Ir94b - chr3R 22115880 exon Ir94b - chr3R 22116043 exon Ir94b - chr3R_9_22115001 chr3R_22115001 RAL-340_100b 3333 chr3R 22117391 22117447 chr3R 22117492 22117548 16 100 5.5 3.5 4.5 2.9 157 chr3R 22117391 intergenic Ir94b -,Ir94c - chr3R 22117470 intergenic Ir94c -,Ir94b - chr3R 22117548 intergenic Ir94c -,Ir94b - chr3R_16_22115001 chr3R_22115001 RAL-340_100b 3334 chr3R 22144584 22144610 chr3R 22144800 22144804 9 210 1.5 11.5 6.5 1.2 220 chr3R 22144584 intron SKIP + chr3R 22144694 intron SKIP + chr3R 22144804 intron SKIP + chr3R_9_22140001 chr3R_22140001 RAL-340_100b 3335 chr3R 22144613 22144630 chr3R 22144793 22144846 9 201 1.5 9.5 5.5 1.4 233 chr3R 22144613 intron SKIP + chr3R 22144730 intron SKIP + chr3R 22144846 intron SKIP + chr3R_9_22140001 chr3R_22140001 RAL-340_100b 3336 chr3R 22239481 22239504 chr3R 22248557 22248589 roo 9 9084 11.0 6.0 8.5 0.9 9108 chr3R 22239481 intron SKIP + chr3R 22244035 intron SKIP + chr3R 22248589 intron SKIP + chr3R_9_22240001 chr3R_22240001 RAL-340_100b 3337 chr3R 22239510 22239523 chr3R 22248554 22248561 roo 8 9064 5.5 6.0 5.8 1.2 9051 chr3R 22239510 intron SKIP + chr3R 22244036 intron SKIP + chr3R 22248561 intron SKIP + chr3R_8_22240001 chr3R_22240001 RAL-340_100b 3338 chr3R 22286120 22286165 chr3R 22286222 22286268 23 98 5.5 12.5 9.0 2.3 148 chr3R 22286120 intron SKIP + chr3R 22286194 intron SKIP + chr3R 22286268 intron SKIP + chr3R_23_22285001 chr3R_22285001 RAL-340_100b 3339 chr3R 22318980 22319010 chr3R 22319072 22319107 6 104 2.0 5.0 3.5 1.3 127 chr3R 22318980 5` UTR CG34377 - chr3R 22319044 intron CG34377 - chr3R 22319107 intron CG34377 - chr3R_6_22315001 chr3R_22315001 RAL-340_100b 3340 chr3R 22321634 22321691 chr3R 22321736 22321793 15 97 6.5 5.5 6.0 2.1 159 chr3R 22321634 intron CG34377 - chr3R 22321714 intron CG34377 - chr3R 22321793 intron CG34377 - chr3R_15_22320001 chr3R_22320001 RAL-340_100b 3341 chr3R 22328297 22328332 chr3R 22328415 22328451 11 118 3.0 5.5 4.2 2.1 154 chr3R 22328297 intergenic not near genes chr3R 22328374 intergenic not near genes chr3R 22328451 intergenic not near genes chr3R_11_22325001 chr3R_22325001 RAL-340_100b 3342 chr3R 22330961 22330982 chr3R 22331078 22331094 5 116 0.0 4.0 2.0 1.7 133 chr3R 22330961 intergenic CG33721 +,CG7080 + chr3R 22331028 intergenic CG33721 +,CG7080 + chr3R 22331094 exon CG33721 + chr3R_5_22330001 chr3R_22330001 RAL-340_100b 3343 chr3R 22338881 22338890 chr3R 22339075 22339079 9 193 16.5 13.0 14.8 0.6 198 chr3R 22338881 intron CG5388 - chr3R 22338980 intron CG5388 - chr3R 22339079 intron CG5388 - chr3R_9_22335001 chr3R_22335001 RAL-340_100b 3344 chr3R 22433077 22433097 chr3R 22433197 22433214 13 122 20.5 23.0 21.8 0.6 137 chr3R 22433077 intron CG13847 - chr3R 22433146 intron CG13847 - chr3R 22433214 intron CG13847 - chr3R_13_22430001 chr3R_22430001 RAL-340_100b 3345 chr3R 22450521 22450578 chr3R 22453186 22453234 NOF 23 2658 7.0 5.5 6.2 3.2 2713 chr3R 22450521 intron CG34376 + chr3R 22451878 intron CG34376 + chr3R 22453234 intron CG34376 + chr3R_23_22450001 chr3R_22450001 RAL-340_100b 3346 chr3R 22520738 22520793 chr3R 22520850 22520905 22 111 11.0 3.0 7.0 2.8 167 chr3R 22520738 intron CG5346 - chr3R 22520822 intron CG5346 - chr3R 22520905 intron CG5346 - chr3R_22_22520001 chr3R_22520001 RAL-340_100b 3347 chr3R 22526275 22526307 chr3R 22526381 22526413 10 103 10.5 8.0 9.2 1.0 138 chr3R 22526275 intron CG5346 - chr3R 22526344 intron CG5346 - chr3R 22526413 intron CG5346 - chr3R_10_22525001 chr3R_22525001 RAL-340_100b 3348 chr3R 22526308 22526329 chr3R 22526377 22526435 12 97 6.0 7.5 6.8 1.5 127 chr3R 22526308 intron CG5346 - chr3R 22526372 intron CG5346 - chr3R 22526435 intron CG5346 - chr3R_12_22525001 chr3R_22525001 RAL-340_100b 3349 chr3R 22580639 22580667 chr3R 22580724 22580775 11 98 3.0 3.5 3.2 2.6 136 chr3R 22580639 intergenic CSN6 +,CG33110 + chr3R 22580707 intergenic CSN6 +,CG33110 + chr3R 22580775 5` UTR CSN6 + chr3R_11_22580001 chr3R_22580001 RAL-340_100b 3350 chr3R 22580669 22580671 chr3R 22580746 22580779 5 102 3.0 8.0 5.5 0.8 110 chr3R 22580669 intergenic CSN6 +,CG33110 + chr3R 22580724 intergenic CSN6 +,CG33110 + chr3R 22580779 5` UTR CSN6 + chr3R_5_22580001 chr3R_22580001 RAL-340_100b 3351 chr3R 22589629 22589650 chr3R 22589981 22590002 6 351 13.0 6.0 9.5 0.6 373 chr3R 22589629 intron Efa6 + chr3R 22589816 intron Efa6 + chr3R 22590002 intron Efa6 + chr3R_6_22585001 chr3R_22585001 RAL-340_100b 3352 chr3R 22589651 22589682 chr3R 22589978 22590013 10 342 6.5 5.0 5.8 1.5 362 chr3R 22589651 intron Efa6 + chr3R 22589832 intron Efa6 + chr3R 22590013 intron Efa6 + chr3R_10_22585001 chr3R_22585001 RAL-340_100b 3353 chr3R 22619815 22619871 chr3R 22620027 22620081 30 209 6.5 7.0 6.8 3.8 266 chr3R 22619815 3` UTR mRpL45 + chr3R 22619948 intergenic loco -,mRpL45 + chr3R 22620081 3` UTR loco - chr3R_30_22615001 chr3R_22615001 RAL-340_100b 3354 chr3R 22684185 22684224 chr3R 22684283 22684324 15 95 9.5 10.0 9.8 1.4 139 chr3R 22684185 intergenic not near genes chr3R 22684254 intergenic not near genes chr3R 22684324 intergenic not near genes chr3R_15_22680001 chr3R_22680001 RAL-340_100b 3355 chr3R 22684229 22684235 chr3R 22684279 22684336 7 83 7.0 8.5 7.8 0.8 107 chr3R 22684229 intergenic not near genes chr3R 22684282 intergenic not near genes chr3R 22684336 intergenic not near genes chr3R_7_22680001 chr3R_22680001 RAL-340_100b 3356 chr3R 18094403 18094408 chr3R 22687488 22687492 9 4593085 10.0 8.5 9.2 0.9 4593089 chr3R 18094403 intron sr + chr3R 20390948 intron Gfrl - chr3R 22687492 intergenic wfs1 -,CG17625 + chr3R_9_20390001 chr3R_20390001 RAL-340_100b 3357 chr3R 22769066 22769080 chr3R 22769168 22769182 8 100 14.0 7.5 10.8 0.7 116 chr3R 22769066 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769124 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769182 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R_8_22765001 chr3R_22765001 RAL-340_100b 3358 chr3R 22769082 22769122 chr3R 22769166 22769214 25 92 4.5 7.0 5.8 3.7 132 chr3R 22769082 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769148 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769214 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R_25_22765001 chr3R_22765001 RAL-340_100b 3359 chr3R 22820378 22820431 chr3R 22820486 22820533 26 107 12.0 9.5 10.8 2.2 155 chr3R 22820378 intergenic not near genes chr3R 22820456 intergenic not near genes chr3R 22820533 intergenic not near genes chr3R_26_22820001 chr3R_22820001 RAL-340_100b 3360 chr3R 22842369 22842378 chr3R 22842490 22842502 11 122 51.5 14.5 33.0 0.3 133 chr3R 22842369 intergenic not near genes chr3R 22842436 intergenic not near genes chr3R 22842502 intergenic not near genes chr3R_11_22840001 chr3R_22840001 RAL-340_100b 3361 chr3R 22842379 22842395 chr3R 22842487 22842519 29 119 45.0 13.0 29.0 1.0 140 chr3R 22842379 intergenic not near genes chr3R 22842449 intergenic not near genes chr3R 22842519 intergenic not near genes chr3R_29_22840001 chr3R_22840001 RAL-340_100b 3362 chr3R 22842397 22842415 chr3R 22842486 22842539 25 118 26.5 12.5 19.5 1.2 142 chr3R 22842397 intergenic not near genes chr3R 22842468 intergenic not near genes chr3R 22842539 intergenic not near genes chr3R_25_22840001 chr3R_22840001 RAL-340_100b 3363 chr3R 22842416 22842420 chr3R 22842485 22842544 7 111 23.5 12.5 18.0 0.4 128 chr3R 22842416 intergenic not near genes chr3R 22842480 intergenic not near genes chr3R 22842544 intergenic not near genes chr3R_7_22840001 chr3R_22840001 RAL-340_100b 3364 chr3R 22853267 22853295 chr3R 22853369 22853389 8 96 12.0 15.0 13.5 0.6 122 chr3R 22853267 intergenic not near genes chr3R 22853328 intergenic not near genes chr3R 22853389 intergenic not near genes chr3R_8_22850001 chr3R_22850001 RAL-340_100b 3365 chr3R 22860132 22860176 chr3R 22860249 22860293 13 116 2.5 10.0 6.2 1.8 161 chr3R 22860132 intergenic not near genes chr3R 22860212 intergenic not near genes chr3R 22860293 intergenic not near genes chr3R_13_22860001 chr3R_22860001 RAL-340_100b 3366 chr3R 22863896 22863930 chr3R 22863999 22864033 18 100 7.5 16.0 11.8 1.4 137 chr3R 22863896 intergenic not near genes chr3R 22863964 intergenic not near genes chr3R 22864033 intergenic not near genes chr3R_18_22860001 chr3R_22860001 RAL-340_100b 3367 chr3R 22877272 22877303 chr3R 22877425 22877436 23 149 34.5 12.5 23.5 0.9 164 chr3R 22877272 intergenic not near genes chr3R 22877354 intergenic not near genes chr3R 22877436 intergenic not near genes chr3R_23_22875001 chr3R_22875001 RAL-340_100b 3368 chr3R 22877305 22877329 chr3R 22877424 22877447 15 132 18.0 11.5 14.8 0.9 142 chr3R 22877305 intergenic not near genes chr3R 22877376 intergenic not near genes chr3R 22877447 intergenic not near genes chr3R_15_22875001 chr3R_22875001 RAL-340_100b 3369 chr3R 22880582 22880599 chr3R 22880684 22880701 5 101 18.0 13.0 15.5 0.3 119 chr3R 22880582 intergenic not near genes chr3R 22880642 intergenic not near genes chr3R 22880701 intergenic not near genes chr3R_5_22880001 chr3R_22880001 RAL-340_100b 3370 chr3R 22880908 22880955 chr3R 22881071 22881118 11 163 8.0 4.0 6.0 1.6 210 chr3R 22880908 intergenic not near genes chr3R 22881013 intergenic not near genes chr3R 22881118 intergenic not near genes chr3R_11_22880001 chr3R_22880001 RAL-340_100b 3371 chr3R 22881188 22881227 chr3R 22884918 22884957 Doc 11 3729 2.0 5.5 3.8 2.3 3769 chr3R 22881188 intergenic not near genes chr3R 22883072 intergenic not near genes chr3R 22884957 intergenic not near genes chr3R_11_22880001 chr3R_22880001 RAL-340_100b 3372 chr3R 22891255 22891305 chr3R 22891360 22891402 13 101 0.0 5.5 2.8 3.4 147 chr3R 22891255 intergenic not near genes chr3R 22891328 intergenic not near genes chr3R 22891402 intergenic not near genes chr3R_13_22890001 chr3R_22890001 RAL-340_100b 3373 chr3R 22952113 22952148 chr3R 22952216 22952246 12 99 19.0 6.0 12.5 0.9 133 chr3R 22952113 intron klg + chr3R 22952180 intron klg + chr3R 22952246 intron klg + chr3R_12_22950001 chr3R_22950001 RAL-340_100b 3374 chr3R 22971220 22971237 chr3R 22971337 22971351 6 118 30.0 9.5 19.8 0.3 131 chr3R 22971220 intergenic not near genes chr3R 22971286 intergenic not near genes chr3R 22971351 intergenic not near genes chr3R_6_22970001 chr3R_22970001 RAL-340_100b 3375 chr3R 22971238 22971241 chr3R 22971352 22971360 5 118 29.0 14.5 21.8 0.2 122 chr3R 22971238 intergenic not near genes chr3R 22971299 intergenic not near genes chr3R 22971360 intergenic not near genes chr3R_5_22970001 chr3R_22970001 RAL-340_100b 3376 chr3R 22971244 22971272 chr3R 22971351 22971370 24 113 16.0 13.5 14.8 1.5 126 chr3R 22971244 intergenic not near genes chr3R 22971307 intergenic not near genes chr3R 22971370 intergenic not near genes chr3R_24_22970001 chr3R_22970001 RAL-340_100b 3377 chr3R 22974259 22974304 chr3R 22974368 22974413 20 107 0.5 4.5 2.5 5.7 154 chr3R 22974259 intergenic not near genes chr3R 22974336 intergenic not near genes chr3R 22974413 intergenic not near genes chr3R_20_22970001 chr3R_22970001 RAL-340_100b 3378 chr3R 23002943 23002999 chr3R 23003046 23003086 24 98 11.0 7.5 9.2 2.4 143 chr3R 23002943 exon CG34375 - chr3R 23003014 intron CG34375 - chr3R 23003086 intron CG34375 - chr3R_24_23000001 chr3R_23000001 RAL-340_100b 3379 chr3R 23070636 23070662 chr3R 23070741 23070744 5 98 12.0 0.0 6.0 0.7 108 chr3R 23070636 3` UTR CG13830 - chr3R 23070690 3` UTR CG13830 - chr3R 23070744 3` UTR CG13830 - chr3R_5_23070001 chr3R_23070001 RAL-340_100b 3380 chr3R 23073633 23073685 chr3R 23073747 23073799 22 112 4.0 2.0 3.0 5.5 166 chr3R 23073633 intron CG13830 - chr3R 23073716 intron CG13830 - chr3R 23073799 intron CG13830 - chr3R_22_23070001 chr3R_23070001 RAL-340_100b 3381 chr3R 23086092 23086125 chr3R 23086248 23086281 9 153 7.5 7.0 7.2 1.1 189 chr3R 23086092 intron CG13830 - chr3R 23086186 intron CG13830 - chr3R 23086281 intron CG13830 - chr3R_9_23085001 chr3R_23085001 RAL-340_100b 3382 chr3R 23086130 23086137 chr3R 23086241 23086270 8 134 5.0 4.0 4.5 1.5 140 chr3R 23086130 intron CG13830 - chr3R 23086200 intron CG13830 - chr3R 23086270 intron CG13830 - chr3R_8_23085001 chr3R_23085001 RAL-340_100b 3383 chr3R 23100132 23100420 chr3R 23100240 23100526 29 107 18.5 5.5 12.0 2.2 394 chr3R 23100132 intron,exon CG13830 -,CG6738 + chr3R 23100329 intron,exon CG13830 -,CG6738 + chr3R 23100526 intron,exon CG13830 -,CG6738 + chr3R_29_23100001 chr3R_23100001 RAL-340_100b 3384 chr3R 23211958 23211962 chr3R 23212061 23212065 4 103 9.5 7.5 8.5 0.4 107 chr3R 23211958 intron cnc - chr3R 23212012 intron cnc - chr3R 23212065 intron cnc - chr3R_4_23210001 chr3R_23210001 RAL-340_100b 3385 chr3R 23211963 23211992 chr3R 23212060 23212095 12 101 5.0 7.0 6.0 1.7 132 chr3R 23211963 intron cnc - chr3R 23212029 intron cnc - chr3R 23212095 intron cnc - chr3R_12_23210001 chr3R_23210001 RAL-340_100b 3386 chr3R 23227209 23227253 chr3R 23227319 23227364 11 106 6.0 0.0 3.0 2.8 155 chr3R 23227209 intergenic cnc - chr3R 23227286 intergenic CG4467 - chr3R 23227364 intergenic CG4467 - chr3R_11_23225001 chr3R_23225001 RAL-340_100b 3387 chr3R 23319658 23319666 chr3R 23319762 23319770 6 103 0.0 6.5 3.2 1.4 112 chr3R 23319658 intron pnt - chr3R 23319714 intron pnt - chr3R 23319770 intron pnt - chr3R_6_23315001 chr3R_23315001 RAL-340_100b 3388 chr3R 23356996 23357011 chr3R 23357107 23357117 6 110 6.5 2.0 4.2 1.2 121 chr3R 23356996 intron Sec13 + chr3R 23357056 intron Sec13 + chr3R 23357117 intron Sec13 + chr3R_6_23355001 chr3R_23355001 RAL-340_100b 3389 chr3R 23380105 23380143 chr3R 23380222 23380245 24 118 5.0 7.5 6.2 3.3 140 chr3R 23380105 exon CG4393 - chr3R 23380175 intron CG4393 - chr3R 23380245 intron CG4393 - chr3R_24_23380001 chr3R_23380001 RAL-340_100b 3390 chr3R 23421967 23421987 chr3R 23422062 23422067 9 101 15.0 12.5 13.8 0.6 100 chr3R 23421967 intron CG4374 - chr3R 23422017 intron CG4374 - chr3R 23422067 intron CG4374 - chr3R_9_23420001 chr3R_23420001 RAL-340_100b 3391 chr3R 23421992 23422003 chr3R 23422102 23422113 4 110 7.5 23.0 15.2 0.2 121 chr3R 23421992 intron CG4374 - chr3R 23422052 intron CG4374 - chr3R 23422113 intron CG4374 - chr3R_4_23420001 chr3R_23420001 RAL-340_100b 3392 chr3R 23422007 23422010 chr3R 23422101 23422120 5 106 5.0 22.5 13.8 0.3 113 chr3R 23422007 intron CG4374 - chr3R 23422064 intron CG4374 - chr3R 23422120 intron CG4374 - chr3R_5_23420001 chr3R_23420001 RAL-340_100b 3393 chr3R 23497928 23497976 chr3R 23498031 23498056 15 101 4.0 5.0 4.5 2.7 128 chr3R 23497928 intergenic not near genes chr3R 23497992 intergenic not near genes chr3R 23498056 intergenic not near genes chr3R_15_23495001 chr3R_23495001 RAL-340_100b 3394 chr3R 23543300 23543334 chr3R 23543402 23543406 12 96 9.5 6.0 7.8 1.4 106 chr3R 23543300 intergenic not near genes chr3R 23543353 intergenic not near genes chr3R 23543406 intergenic not near genes chr3R_12_23540001 chr3R_23540001 RAL-340_100b 3395 chr3R 23549123 23549182 chr3R 23549253 23549292 23 122 2.5 10.5 6.5 3.1 169 chr3R 23549123 intergenic not near genes chr3R 23549208 intergenic not near genes chr3R 23549292 intergenic not near genes chr3R_23_23545001 chr3R_23545001 RAL-340_100b 3396 chr3R 23558381 23558400 chr3R 23560185 23560206 Bari1 4 1806 13.5 4.5 9.0 0.4 1825 chr3R 23558381 intron beat-IV + chr3R 23559294 intron beat-IV + chr3R 23560206 intron beat-IV + chr3R_4_23555001 chr3R_23555001 RAL-340_100b 3397 chr3R 23558408 23558427 chr3R 23560179 23560233 Bari1 4 1796 7.5 4.5 6.0 0.6 1825 chr3R 23558408 intron beat-IV + chr3R 23559320 intron beat-IV + chr3R 23560233 intron beat-IV + chr3R_4_23555001 chr3R_23555001 RAL-340_100b 3398 chr3R 23565836 23565866 chr3R 23565948 23565951 10 108 1.0 0.0 0.5 6.7 115 chr3R 23565836 intron beat-IV + chr3R 23565894 intron beat-IV + chr3R 23565951 intron beat-IV + chr3R_10_23565001 chr3R_23565001 RAL-340_100b 3399 chr3R 10451877 10451880 chr3R 23614722 23614722 20 13162845 54.0 10.5 32.2 0.6 13162845 chr3R 10451877 intergenic not near genes chr3R 17033300 3` UTR CG31268 + chr3R 23614722 intron CG31145 - chr3R_20_17030001 chr3R_17030001 RAL-340_100b 3400 chr3R 23684687 23684727 chr3R 23685181 23685207 roo 13 500 4.0 11.0 7.5 1.5 520 chr3R 23684687 exon CG18754 + chr3R 23684947 intron CG18754 + chr3R 23685207 exon CG18754 + chr3R_13_23680001 chr3R_23680001 RAL-340_100b 3401 chr3R 23724857 23724910 chr3R 23724966 23724997 9 97 6.0 6.5 6.2 1.2 140 chr3R 23724857 intron CG10365 + chr3R 23724927 intron CG10365 + chr3R 23724997 intron CG10365 + chr3R_9_23720001 chr3R_23720001 RAL-340_100b 3402 chr3R 23739888 23739896 chr3R 23739991 23739999 6 102 29.0 10.0 19.5 0.3 111 chr3R 23739888 intron Hmgcr + chr3R 23739944 intron Hmgcr + chr3R 23739999 intron Hmgcr + chr3R_6_23735001 chr3R_23735001 RAL-340_100b 3403 chr3R 23739899 23739912 chr3R 23739996 23740015 6 101 22.0 10.5 16.2 0.3 116 chr3R 23739899 intron Hmgcr + chr3R 23739957 intron Hmgcr + chr3R 23740015 intron Hmgcr + chr3R_6_23735001 chr3R_23735001 RAL-340_100b 3404 chr3R 23739913 23739921 chr3R 23739995 23740024 5 99 17.5 10.5 14.0 0.3 111 chr3R 23739913 intron Hmgcr + chr3R 23739968 intron Hmgcr + chr3R 23740024 intron Hmgcr + chr3R_5_23735001 chr3R_23735001 RAL-340_100b 3405 chr3R 23739922 23739935 chr3R 23739993 23740017 9 88 12.5 10.0 11.2 0.7 95 chr3R 23739922 intron Hmgcr + chr3R 23739970 intron Hmgcr + chr3R 23740017 intron Hmgcr + chr3R_9_23735001 chr3R_23735001 RAL-340_100b 3406 chr3R 23835385 23835387 chr3R 23844560 23844562 roo 4 9175 26.5 21.0 23.8 0.2 9177 chr3R 23835385 intron CG34355 + chr3R 23839974 intron CG34355 + chr3R 23844562 intron CG34355 + chr3R_4_23835001 chr3R_23835001 RAL-340_100b 3407 chr3R 23835388 23835433 chr3R 23844563 23844608 roo 13 9175 10.5 21.5 16.0 0.8 9220 chr3R 23835388 intron CG34355 + chr3R 23839998 intron CG34355 + chr3R 23844608 intron CG34355 + chr3R_13_23835001 chr3R_23835001 RAL-340_100b 3408 chr3R 23851063 23851088 chr3R 23858755 23858780 opus 10 7691 7.0 23.5 15.2 0.6 7717 chr3R 23851063 3` UTR CG34355 + chr3R 23854922 intergenic not near genes chr3R 23858780 intergenic not near genes chr3R_10_23850001 chr3R_23850001 RAL-340_100b 3409 chr3R 23884277 23884324 chr3R 23884386 23884433 23 108 10.5 5.5 8.0 2.6 156 chr3R 23884277 intron Pli - chr3R 23884355 intron Pli - chr3R 23884433 intron Pli - chr3R_23_23880001 chr3R_23880001 RAL-340_100b 3410 chr3R 23944886 23944935 chr3R 23944996 23945044 17 109 4.0 8.0 6.0 2.4 158 chr3R 23944886 intron CG12268 - chr3R 23944965 intron CG12268 - chr3R 23945044 exon CG12268 - chr3R_17_23940001 chr3R_23940001 RAL-340_100b 3411 chr3R 23949021 23949074 chr3R 23949119 23949175 19 99 4.0 8.5 6.2 2.6 154 chr3R 23949021 intergenic not near genes chr3R 23949098 intergenic not near genes chr3R 23949175 intergenic not near genes chr3R_19_23945001 chr3R_23945001 RAL-340_100b 3412 chr3R 24011648 24011651 chr3R 24011751 24011757 5 106 9.5 4.5 7.0 0.6 109 chr3R 24011648 intron KrT95D - chr3R 24011702 intron KrT95D - chr3R 24011757 intron KrT95D - chr3R_5_24010001 chr3R_24010001 RAL-340_100b 3413 chr3R 24015393 24015450 chr3R 24015496 24015497 15 94 0.0 3.5 1.8 5.4 104 chr3R 24015393 intron KrT95D - chr3R 24015445 intron KrT95D - chr3R 24015497 intron KrT95D - chr3R_15_24015001 chr3R_24015001 RAL-340_100b 3414 chr3R 24021601 24021628 chr3R 24021716 24021743 14 113 5.5 9.0 7.2 1.7 142 chr3R 24021601 intron KrT95D - chr3R 24021672 intron KrT95D - chr3R 24021743 intron KrT95D - chr3R_14_24020001 chr3R_24020001 RAL-340_100b 3415 chr3R 24025562 24025588 chr3R 24025655 24025686 11 96 13.5 11.0 12.2 0.8 124 chr3R 24025562 intron KrT95D - chr3R 24025624 intron KrT95D - chr3R 24025686 intron KrT95D - chr3R_11_24025001 chr3R_24025001 RAL-340_100b 3416 chr3R 24072063 24072121 chr3R 24072526 24072582 jockey 10 453 5.5 0.0 2.8 2.6 519 chr3R 24072063 intron 4EHP - chr3R 24072322 intron 4EHP - chr3R 24072582 intron 4EHP - chr3R_10_24070001 chr3R_24070001 RAL-340_100b 3417 chr3R 21907534 21907534 chr3R 24074943 24074965 7 2167419 64.0 32.5 48.2 0.1 2167431 chr3R 21907534 intergenic CG6678 + chr3R 22991250 exon Nha2 - chr3R 24074965 intron 4EHP - chr3R_7_22990001 chr3R_22990001 RAL-340_100b 3418 chr3R 24076908 24076943 chr3R 24078383 24078399 hobo 8 1480 13.0 6.0 9.5 0.8 1491 chr3R 24076908 intron 4EHP - chr3R 24077654 intron 4EHP - chr3R 24078399 intron 4EHP - chr3R_8_24075001 chr3R_24075001 RAL-340_100b 3419 chr3R 24100438 24100483 chr3R 24100558 24100598 15 117 3.0 6.0 4.5 2.7 160 chr3R 24100438 intron 4EHP - chr3R 24100518 intron 4EHP - chr3R 24100598 intron 4EHP - chr3R_15_24100001 chr3R_24100001 RAL-340_100b 3420 chr3R 24139612 24139615 chr3R 24139712 24139725 6 108 9.0 10.0 9.5 0.6 113 chr3R 24139612 intron Npc2f + chr3R 24139668 intron Npc2f + chr3R 24139725 intron Npc2f + chr3R_6_24135001 chr3R_24135001 RAL-340_100b 3421 chr3R 24139619 24139650 chr3R 24139721 24139750 8 106 4.0 11.0 7.5 0.9 131 chr3R 24139619 intron Npc2f + chr3R 24139684 intron Npc2f + chr3R 24139750 intron Npc2f + chr3R_8_24135001 chr3R_24135001 RAL-340_100b 3422 chr3R 24173529 24173582 chr3R 24173636 24173649 18 99 3.0 8.0 5.5 2.8 120 chr3R 24173529 intron CG13606 + chr3R 24173589 intron CG13606 + chr3R 24173649 intron CG13606 + chr3R_18_24170001 chr3R_24170001 RAL-340_100b 3423 chr3R 21907534 21907536 chr3R 24180916 24180924 5 2273384 64.0 95.5 79.8 0.1 2273390 chr3R 21907534 intergenic CG6678 + chr3R 23044229 exon CG13837 + chr3R 24180924 intron CG13606 + chr3R_5_23040001 chr3R_23040001 RAL-340_100b 3424 chr3R 21907534 21907535 chr3R 24180939 24180993 6 2273440 64.0 108.5 86.2 0.1 2273459 chr3R 21907534 intergenic CG6678 + chr3R 23044264 exon CG13837 + chr3R 24180993 intron CG13606 + chr3R_6_23040001 chr3R_23040001 RAL-340_100b 3425 chr3R 24207199 24207219 chr3R 24212295 24212314 flea 6 5098 17.5 16.0 16.8 0.3 5115 chr3R 24207199 intron twin - chr3R 24209756 intron twin - chr3R 24212314 intron twin - chr3R_6_24205001 chr3R_24205001 RAL-340_100b 3426 chr3R 24207220 24207242 chr3R 24212294 24212327 flea 10 5091 13.0 16.0 14.5 0.6 5107 chr3R 24207220 intron twin - chr3R 24209774 intron twin - chr3R 24212327 intron twin - chr3R_10_24205001 chr3R_24205001 RAL-340_100b 3427 chr3R 24236445 24236462 chr3R 24236547 24236564 11 101 16.0 9.0 12.5 0.8 119 chr3R 24236445 exon mask + chr3R 24236504 exon mask + chr3R 24236564 intron mask + chr3R_11_24235001 chr3R_24235001 RAL-340_100b 3428 chr3R 24236466 24236497 chr3R 24236546 24236583 25 98 10.0 9.0 9.5 2.4 117 chr3R 24236466 exon mask + chr3R 24236524 intron mask + chr3R 24236583 intron mask + chr3R_25_24235001 chr3R_24235001 RAL-340_100b 3429 chr3R 21907534 21907536 chr3R 24389465 24389465 60 2481930 64.0 23.5 43.8 1.3 2481931 chr3R 21907534 intergenic CG6678 + chr3R 23148500 intergenic not near genes chr3R 24389465 intron CG5768 - chr3R_60_23145001 chr3R_23145001 RAL-340_100b 3430 chr3R 17357119 17357122 chr3R 24389957 24389960 9 7032838 26.0 27.5 26.8 0.3 7032841 chr3R 17357119 intron beat-IIa - chr3R 20873540 3` UTR TotC + chr3R 24389960 intron CG5768 - chr3R_9_20870001 chr3R_20870001 RAL-340_100b 3431 chr3R 24431584 24431627 chr3R 24431681 24431731 21 103 1.5 1.5 1.5 8.4 147 chr3R 24431584 intron nAChRalpha1 - chr3R 24431658 intron nAChRalpha1 - chr3R 24431731 intron nAChRalpha1 - chr3R_21_24430001 chr3R_24430001 RAL-340_100b 3432 chr3R 24434214 24434272 chr3R 24434317 24434375 23 98 5.0 7.5 6.2 3.2 161 chr3R 24434214 intron nAChRalpha1 - chr3R 24434294 intron nAChRalpha1 - chr3R 24434375 intron nAChRalpha1 - chr3R_23_24430001 chr3R_24430001 RAL-340_100b 3433 chr3R 24441594 24441612 chr3R 24441901 24441919 8 306 30.0 10.5 20.2 0.4 325 chr3R 24441594 intron nAChRalpha1 - chr3R 24441756 intron nAChRalpha1 - chr3R 24441919 intron nAChRalpha1 - chr3R_8_24440001 chr3R_24440001 RAL-340_100b 3434 chr3R 24441639 24441647 chr3R 24441901 24441930 6 272 11.5 10.5 11.0 0.5 291 chr3R 24441639 intron nAChRalpha1 - chr3R 24441784 intron nAChRalpha1 - chr3R 24441930 intron nAChRalpha1 - chr3R_6_24440001 chr3R_24440001 RAL-340_100b 3435 chr3R 24447722 24447755 chr3R 24447834 24447867 5 112 0.0 7.5 3.8 1.0 145 chr3R 24447722 intron nAChRalpha1 - chr3R 24447794 intron nAChRalpha1 - chr3R 24447867 intron nAChRalpha1 - chr3R_5_24445001 chr3R_24445001 RAL-340_100b 3436 chr3R 24464239 24464286 chr3R 24464529 24464571 15 287 4.0 4.5 4.2 2.9 332 chr3R 24464239 intergenic CR45649 - chr3R 24464405 intergenic CR45649 - chr3R 24464571 intergenic CR45649 - chr3R_15_24460001 chr3R_24460001 RAL-340_100b 3437 chr3R 24482915 24482927 chr3R 24483016 24483040 7 106 14.5 10.0 12.2 0.5 125 chr3R 24482915 intergenic not near genes chr3R 24482978 intergenic not near genes chr3R 24483040 intergenic not near genes chr3R_7_24480001 chr3R_24480001 RAL-340_100b 3438 chr3R 24493039 24493063 chr3R 24493150 24493169 11 109 8.5 4.5 6.5 1.5 130 chr3R 24493039 intergenic not near genes chr3R 24493104 intergenic not near genes chr3R 24493169 intergenic not near genes chr3R_11_24490001 chr3R_24490001 RAL-340_100b 3439 chr3R 24493081 24493088 chr3R 24493150 24493199 7 102 4.5 4.5 4.5 1.3 118 chr3R 24493081 intergenic not near genes chr3R 24493140 intergenic not near genes chr3R 24493199 intergenic not near genes chr3R_7_24490001 chr3R_24490001 RAL-340_100b 3440 chr3R 21907535 21907536 chr3R 24520428 24520449 4 2612903 64.0 81.0 72.5 0.1 2612914 chr3R 21907535 intergenic CG6678 + chr3R 23213992 intron cnc - chr3R 24520449 exon Pp1alpha-96A + chr3R_4_23210001 chr3R_23210001 RAL-340_100b 3441 chr3R 24523876 24523922 chr3R 24523987 24524034 8 111 5.0 0.0 2.5 2.3 158 chr3R 24523876 intergenic CG13622 - chr3R 24523955 intergenic CG13622 - chr3R 24524034 intergenic CG13622 - chr3R_8_24520001 chr3R_24520001 RAL-340_100b 3442 chr3R 24527786 24527832 chr3R 24527902 24527943 25 113 6.5 10.0 8.2 2.7 157 chr3R 24527786 intergenic CG13618 +,CG6607 + chr3R 24527864 intergenic CG6607 +,CG13618 + chr3R 24527943 intergenic CG6607 +,CG13618 + chr3R_25_24525001 chr3R_24525001 RAL-340_100b 3443 chr3R 24581773 24581828 chr3R 24581896 24581950 26 121 4.0 10.5 7.2 3.2 177 chr3R 24581773 intron CG13624 - chr3R 24581862 intron CG13624 - chr3R 24581950 intron CG13624 - chr3R_26_24580001 chr3R_24580001 RAL-340_100b 3444 chr3R 24594653 24594665 chr3R 24594918 24594930 pogo 7 264 9.5 15.5 12.5 0.5 277 chr3R 24594653 intron mld + chr3R 24594792 intron mld + chr3R 24594930 intron mld + chr3R_7_24590001 chr3R_24590001 RAL-340_100b 3445 chr3R 24667587 24667622 chr3R 24667689 24667694 13 98 15.0 0.5 7.8 1.5 107 chr3R 24667587 intron slo + chr3R 24667640 intron slo + chr3R 24667694 intron slo + chr3R_13_24665001 chr3R_24665001 RAL-340_100b 3446 chr3R 24671211 24671215 chr3R 24671306 24671317 4 100 11.0 7.0 9.0 0.4 106 chr3R 24671211 intron slo + chr3R 24671264 intron slo + chr3R 24671317 intron slo + chr3R_4_24670001 chr3R_24670001 RAL-340_100b 3447 chr3R 24671216 24671248 chr3R 24671301 24671314 8 87 5.0 5.5 5.2 1.3 98 chr3R 24671216 intron slo + chr3R 24671265 intron slo + chr3R 24671314 intron slo + chr3R_8_24670001 chr3R_24670001 RAL-340_100b 3448 chr3R 24714668 24714692 chr3R 24714762 24714772 12 97 18.0 2.5 10.2 1.1 104 chr3R 24714668 intron CG13627 + chr3R 24714720 intron CG13627 + chr3R 24714772 intron CG13627 + chr3R_12_24710001 chr3R_24710001 RAL-340_100b 3449 chr3R 24728312 24728325 chr3R 24728510 24728523 5 198 22.0 4.0 13.0 0.4 211 chr3R 24728312 exon tok + chr3R 24728418 intron tok + chr3R 24728523 intron tok + chr3R_5_24725001 chr3R_24725001 RAL-340_100b 3450 chr3R 24728332 24728336 chr3R 24728530 24728534 4 198 18.5 7.5 13.0 0.3 202 chr3R 24728332 intron tok + chr3R 24728433 intron tok + chr3R 24728534 intron tok + chr3R_4_24725001 chr3R_24725001 RAL-340_100b 3451 chr3R 24728339 24728359 chr3R 24728519 24728557 9 188 12.0 6.0 9.0 0.9 218 chr3R 24728339 intron tok + chr3R 24728448 intron tok + chr3R 24728557 intron tok + chr3R_9_24725001 chr3R_24725001 RAL-340_100b 3452 chr3R 24730070 24730086 chr3R 24732471 24732489 Doc 11 2401 17.0 2.0 9.5 1.0 2419 chr3R 24730070 intron tok + chr3R 24731280 intron tok + chr3R 24732489 intron tok + chr3R_11_24730001 chr3R_24730001 RAL-340_100b 3453 chr3R 24730087 24730115 chr3R 24732469 24732501 Doc 12 2397 9.0 2.0 5.5 1.8 2414 chr3R 24730087 intron tok + chr3R 24731294 intron tok + chr3R 24732501 intron tok + chr3R_12_24730001 chr3R_24730001 RAL-340_100b 3454 chr3R 24787524 24787558 chr3R 24787625 24787659 7 101 8.0 2.5 5.2 1.1 135 chr3R 24787524 intergenic CG5805 - chr3R 24787592 intergenic CG5805 -,Ets96B + chr3R 24787659 intergenic CG5805 -,Ets96B + chr3R_7_24785001 chr3R_24785001 RAL-340_100b 3455 chr3R 24789961 24790006 chr3R 24790131 24790176 15 168 9.5 14.0 11.8 1.2 215 chr3R 24789961 intron,5` UTR Ets96B +,CG13634 - chr3R 24790068 intron,5` UTR Ets96B +,CG13634 - chr3R 24790176 intron Ets96B + chr3R_15_24790001 chr3R_24790001 RAL-340_100b 3456 chr3R 24832141 24832175 chr3R 24832273 24832286 12 130 12.0 5.0 8.5 1.3 145 chr3R 24832141 intergenic not near genes chr3R 24832214 intergenic not near genes chr3R 24832286 intergenic not near genes chr3R_12_24830001 chr3R_24830001 RAL-340_100b 3457 chr3R 24912458 24912508 chr3R 24912565 24912612 21 104 10.0 6.5 8.2 2.3 154 chr3R 24912458 intergenic not near genes chr3R 24912535 intergenic CR44267 + chr3R 24912612 intergenic CR44267 + chr3R_21_24910001 chr3R_24910001 RAL-340_100b 3458 chr3R 24927102 24927149 chr3R 24931918 24931958 Doc 10 4810 3.5 9.5 6.5 1.3 4856 chr3R 24927102 intergenic Trf4-2 + chr3R 24929530 intergenic not near genes chr3R 24931958 intergenic CG11771 + chr3R_10_24925001 chr3R_24925001 RAL-340_100b 3459 chr3R 21907535 21907536 chr3R 24972552 24972563 4 3065022 64.0 56.0 60.0 0.1 3065028 chr3R 21907535 intergenic CG6678 + chr3R 23440049 intron CG4374 - chr3R 24972563 intergenic not near genes chr3R_4_23440001 chr3R_23440001 RAL-340_100b 3460 chr3R 24974889 24974936 chr3R 24974993 24975030 21 101 5.0 8.0 6.5 2.8 141 chr3R 24974889 intergenic not near genes chr3R 24974960 intergenic not near genes chr3R 24975030 intergenic not near genes chr3R_21_24970001 chr3R_24970001 RAL-340_100b 3461 chr3R 25004895 25004910 chr3R 25004996 25005016 8 104 4.0 9.5 6.8 1.0 121 chr3R 25004895 intron tnc + chr3R 25004956 intron tnc + chr3R 25005016 intron tnc + chr3R_8_25000001 chr3R_25000001 RAL-340_100b 3462 chr3R 25004915 25004922 chr3R 25004986 25005030 5 101 3.0 6.0 4.5 0.9 115 chr3R 25004915 intron tnc + chr3R 25004972 intron tnc + chr3R 25005030 intron tnc + chr3R_5_25000001 chr3R_25000001 RAL-340_100b 3463 chr3R 25048502 25048554 chr3R 25048682 25048731 27 180 8.5 15.0 11.8 2.1 229 chr3R 25048502 exon CG11790 + chr3R 25048616 intron CG11790 + chr3R 25048731 exon CG11790 + chr3R_27_25045001 chr3R_25045001 RAL-340_100b 3464 chr3R 25136374 25136434 chr3R 25136479 25136499 24 100 8.5 4.0 6.2 3.3 125 chr3R 25136374 3` UTR Bili + chr3R 25136436 3` UTR Bili + chr3R 25136499 3` UTR Bili + chr3R_24_25135001 chr3R_25135001 RAL-340_100b 3465 chr3R 25144577 25144631 chr3R 25144690 25144744 14 108 13.5 15.5 14.5 0.9 167 chr3R 25144577 intergenic not near genes chr3R 25144660 intergenic not near genes chr3R 25144744 intergenic not near genes chr3R_14_25140001 chr3R_25140001 RAL-340_100b 3466 chr3R 25209575 25209630 chr3R 25209682 25209737 19 106 0.0 4.5 2.2 5.9 162 chr3R 25209575 intron CG13654 + chr3R 25209656 intron CG13654 + chr3R 25209737 intron CG13654 + chr3R_19_25205001 chr3R_25205001 RAL-340_100b 3467 chr3R 25235798 25235828 chr3R 25235903 25235931 10 104 7.0 6.0 6.5 1.3 133 chr3R 25235798 intergenic CG10420 - chr3R 25235864 intergenic CG10420 - chr3R 25235931 intergenic CG10420 - chr3R_10_25235001 chr3R_25235001 RAL-340_100b 3468 chr3R 25235829 25235847 chr3R 25235899 25235952 17 93 4.0 5.5 4.8 2.9 123 chr3R 25235829 intergenic CG10420 - chr3R 25235890 intergenic CG10420 - chr3R 25235952 intergenic CG10420 - chr3R_17_25235001 chr3R_25235001 RAL-340_100b 3469 chr3R 25241780 25241800 chr3R 25241892 25241912 7 112 13.0 11.5 12.2 0.5 132 chr3R 25241780 intergenic to +,CG11854 + chr3R 25241846 intergenic CG11854 +,to + chr3R 25241912 intergenic CG11854 +,to + chr3R_7_25240001 chr3R_25240001 RAL-340_100b 3470 chr3R 25241803 25241822 chr3R 25241885 25241934 5 102 7.5 10.0 8.8 0.5 131 chr3R 25241803 intergenic to +,CG11854 + chr3R 25241868 intergenic CG11854 +,to + chr3R 25241934 intergenic CG11854 +,to + chr3R_5_25240001 chr3R_25240001 RAL-340_100b 3471 chr3R 25303179 25303220 chr3R 25303272 25303326 20 102 6.0 7.5 6.8 2.6 147 chr3R 25303179 exon CG31370 + chr3R 25303252 exon CG31370 + chr3R 25303326 exon CG31370 + chr3R_20_25300001 chr3R_25300001 RAL-340_100b 3472 chr3R 25368448 25368503 chr3R 25368591 25368615 44 138 11.0 1.5 6.2 6.1 167 chr3R 25368448 intron Fur1 - chr3R 25368532 intron Fur1 - chr3R 25368615 intron Fur1 - chr3R_44_25365001 chr3R_25365001 RAL-340_100b 3473 chr3R 25399363 25399364 chr3R 25400114 25400115 4 750 60.0 96.0 78.0 0.1 752 chr3R 25399363 intron,exon Fur1 -,Muc96D - chr3R 25399739 intron,exon Fur1 -,Muc96D - chr3R 25400115 intron,exon Fur1 -,Muc96D - chr3R_4_25395001 chr3R_25395001 RAL-340_100b 3474 chr3R 25520965 25520984 chr3R 25521089 25521095 15 119 22.0 12.5 17.2 0.8 130 chr3R 25520965 intron msi + chr3R 25521030 intron msi + chr3R 25521095 intron msi + chr3R_15_25520001 chr3R_25520001 RAL-340_100b 3475 chr3R 7773344 7773344 chr3R 25538111 25538124 10 17764779 28.5 66.5 47.5 0.2 17764780 chr3R 7773344 intergenic not near genes chr3R 16655734 intergenic modSP - chr3R 25538124 intron msi + chr3R_10_16655001 chr3R_16655001 RAL-340_100b 3476 chr3R 25621015 25621073 chr3R 25621116 25621174 18 100 6.5 7.0 6.8 2.3 159 chr3R 25621015 intron Npl4 - chr3R 25621094 intron Npl4 - chr3R 25621174 intron Npl4 - chr3R_18_25620001 chr3R_25620001 RAL-340_100b 3477 chr3R 25669041 25669095 chr3R 25669160 25669214 12 116 2.5 4.5 3.5 2.7 173 chr3R 25669041 intron Lgr3 + chr3R 25669128 intron Lgr3 + chr3R 25669214 exon Lgr3 + chr3R_12_25665001 chr3R_25665001 RAL-340_100b 3478 chr3R 25725814 25725855 chr3R 25734999 25735040 roo 9 9185 3.5 9.5 6.5 1.2 9226 chr3R 25725814 intron LpR2 - chr3R 25730427 intron LpR2 - chr3R 25735040 intron LpR2 - chr3R_9_25730001 chr3R_25730001 RAL-340_100b 3479 chr3R 25738614 25738634 chr3R 25738726 25738747 11 109 9.5 6.0 7.8 1.2 133 chr3R 25738614 intron LpR2 - chr3R 25738680 intron LpR2 - chr3R 25738747 intron LpR2 - chr3R_11_25735001 chr3R_25735001 RAL-340_100b 3480 chr3R 25738637 25738665 chr3R 25738724 25738778 16 102 5.5 6.0 5.8 2.4 141 chr3R 25738637 intron LpR2 - chr3R 25738708 intron LpR2 - chr3R 25738778 intron LpR2 - chr3R_16_25735001 chr3R_25735001 RAL-340_100b 3481 chr3R 25765860 25765909 chr3R 25765957 25765982 25 94 8.0 5.5 6.8 3.2 122 chr3R 25765860 intergenic not near genes chr3R 25765921 intergenic not near genes chr3R 25765982 intergenic not near genes chr3R_25_25765001 chr3R_25765001 RAL-340_100b 3482 chr3R 25807719 25807770 chr3R 25807825 25807870 8 102 4.0 6.5 5.2 1.3 151 chr3R 25807719 intergenic CR45652 + chr3R 25807794 intergenic CR45652 + chr3R 25807870 intergenic CR45652 + chr3R_8_25805001 chr3R_25805001 RAL-340_100b 3483 chr3R 25832674 25832719 chr3R 25841881 25841926 roo 24 9203 10.0 13.5 11.8 1.9 9252 chr3R 25832674 exon alpha4GT2 + chr3R 25837300 intron alpha4GT2 + chr3R 25841926 exon alpha4GT2 + chr3R_24_25835001 chr3R_25835001 RAL-340_100b 3484 chr3R 25843614 25843662 chr3R 25843769 25843817 12 154 7.5 13.5 10.5 1.0 203 chr3R 25843614 intergenic CR45653 + chr3R 25843716 intergenic CR45653 + chr3R 25843817 intergenic CR45653 + chr3R_12_25840001 chr3R_25840001 RAL-340_100b 3485 chr3R 25861798 25861848 chr3R 25861900 25861950 24 100 5.5 3.0 4.2 4.6 152 chr3R 25861798 intron CG5890 + chr3R 25861874 intron CG5890 + chr3R 25861950 intron CG5890 + chr3R_24_25860001 chr3R_25860001 RAL-340_100b 3486 chr3R 25900879 25900938 chr3R 25903576 25903630 28 2694 64.0 58.0 61.0 0.5 2751 chr3R 25900879 exon CG31091 + chr3R 25902254 intergenic CG31091 +,CG31089 + chr3R 25903630 exon,intron CG31089 +,CR43259 - chr3R_28_25900001 chr3R_25900001 RAL-340_100b 3487 chr3R 25932725 25932757 chr3R 25933142 25933164 10 416 12.5 9.0 10.8 0.8 439 chr3R 25932725 intron CCAP-R - chr3R 25932944 intron CCAP-R - chr3R 25933164 intron CCAP-R - chr3R_10_25930001 chr3R_25930001 RAL-340_100b 3488 chr3R 26010150 26010195 chr3R 26010251 26010297 22 99 15.5 16.5 16.0 1.3 147 chr3R 26010150 intergenic not near genes chr3R 26010224 intergenic not near genes chr3R 26010297 intergenic not near genes chr3R_22_26010001 chr3R_26010001 RAL-340_100b 3489 chr3R 26010200 26010205 chr3R 26010257 26010302 4 87 13.5 18.0 15.8 0.2 102 chr3R 26010200 intergenic not near genes chr3R 26010251 intergenic not near genes chr3R 26010302 intergenic not near genes chr3R_4_26010001 chr3R_26010001 RAL-340_100b 3490 chr3R 26018664 26018674 chr3R 26018777 26018787 4 113 29.5 7.0 18.2 0.2 123 chr3R 26018664 3` UTR CR43643 - chr3R 26018726 3` UTR CR43643 - chr3R 26018787 3` UTR CR43643 - chr3R_4_26015001 chr3R_26015001 RAL-340_100b 3491 chr3R 26038353 26038393 chr3R 26038452 26038493 12 109 6.5 5.0 5.8 1.8 140 chr3R 26038353 intergenic E(spl)m7-HLH + chr3R 26038423 intergenic E(spl)m7-HLH + chr3R 26038493 intergenic E(spl)m7-HLH + chr3R_12_26035001 chr3R_26035001 RAL-340_100b 3492 chr3R 26038952 26038996 chr3R 26039114 26039158 10 157 5.5 5.0 5.2 1.6 206 chr3R 26038952 intergenic not near genes chr3R 26039055 intergenic not near genes chr3R 26039158 intergenic not near genes chr3R_10_26035001 chr3R_26035001 RAL-340_100b 3493 chr3R 26093831 26093875 chr3R 26093929 26093978 16 99 4.5 5.5 5.0 2.7 147 chr3R 26093831 intron dys - chr3R 26093904 intron dys - chr3R 26093978 intron dys - chr3R_16_26090001 chr3R_26090001 RAL-340_100b 3494 chr3R 26108805 26108816 chr3R 26117413 26117424 Tirant 6 8607 41.0 0.0 20.5 0.3 8619 chr3R 26108805 5` UTR CG31324 + chr3R 26113114 intron CG31324 + chr3R 26117424 intron CG31324 + chr3R_6_26110001 chr3R_26110001 RAL-340_100b 3495 chr3R 26108817 26108834 chr3R 26117410 26117426 Tirant 5 8597 33.0 0.0 16.5 0.3 8609 chr3R 26108817 5` UTR CG31324 + chr3R 26113122 intron CG31324 + chr3R 26117426 intron CG31324 + chr3R_5_26110001 chr3R_26110001 RAL-340_100b 3496 chr3R 26108839 26108853 chr3R 26117407 26117416 Tirant 4 8568 16.5 0.0 8.2 0.4 8577 chr3R 26108839 5` UTR CG31324 + chr3R 26113128 intron CG31324 + chr3R 26117416 intron CG31324 + chr3R_4_26110001 chr3R_26110001 RAL-340_100b 3497 chr3R 26122437 26122479 chr3R 26122538 26122580 40 98 15.5 29.0 22.2 1.7 143 chr3R 26122437 intron CG31324 + chr3R 26122508 intron CG31324 + chr3R 26122580 intron CG31324 + chr3R_40_26120001 chr3R_26120001 RAL-340_100b 3498 chr3R 26144664 26144724 chr3R 26144767 26144771 20 99 8.0 6.0 7.0 2.5 107 chr3R 26144664 intergenic not near genes chr3R 26144718 intergenic not near genes chr3R 26144771 intergenic not near genes chr3R_20_26140001 chr3R_26140001 RAL-340_100b 3499 chr3R 26166151 26166209 chr3R 26166262 26166309 44 108 4.0 7.0 5.5 6.8 158 chr3R 26166151 intergenic not near genes chr3R 26166230 intergenic not near genes chr3R 26166309 intergenic not near genes chr3R_44_26165001 chr3R_26165001 RAL-340_100b 3500 chr3R 21907535 21907536 chr3R 26234218 26234218 4 4326682 64.0 38.0 51.0 0.1 4326683 chr3R 21907535 intergenic CG6678 + chr3R 24070876 intron 4EHP - chr3R 26234218 3` UTR CG12290 + chr3R_4_24070001 chr3R_24070001 RAL-340_100b 3501 chr3R 26265792 26265827 chr3R 26265905 26265938 19 110 26.0 12.5 19.2 0.9 146 chr3R 26265792 intron CG6154 + chr3R 26265865 intron CG6154 + chr3R 26265938 intron CG6154 + chr3R_19_26265001 chr3R_26265001 RAL-340_100b 3502 chr3R 26292083 26292124 chr3R 26292188 26292229 9 103 11.0 6.0 8.5 0.9 146 chr3R 26292083 intergenic not near genes chr3R 26292156 intergenic not near genes chr3R 26292229 intergenic not near genes chr3R_9_26290001 chr3R_26290001 RAL-340_100b 3503 chr3R 26292126 26292134 chr3R 26292186 26292238 9 98 8.5 5.5 7.0 1.1 112 chr3R 26292126 intergenic not near genes chr3R 26292182 intergenic not near genes chr3R 26292238 intergenic not near genes chr3R_9_26290001 chr3R_26290001 RAL-340_100b 3504 chr3R 26294691 26294746 chr3R 26294794 26294841 25 102 11.0 7.5 9.2 2.5 150 chr3R 26294691 intergenic not near genes chr3R 26294766 intergenic not near genes chr3R 26294841 intergenic not near genes chr3R_25_26290001 chr3R_26290001 RAL-340_100b 3505 chr3R 26305509 26305548 chr3R 26305917 26305946 7 404 10.5 9.5 10.0 0.6 437 chr3R 26305509 intergenic not near genes chr3R 26305728 intergenic not near genes chr3R 26305946 intergenic not near genes chr3R_7_26305001 chr3R_26305001 RAL-340_100b 3506 chr3R 26307103 26307110 chr3R 26307249 26307254 6 146 3.5 0.0 1.8 2.1 151 chr3R 26307103 intergenic not near genes chr3R 26307178 intergenic not near genes chr3R 26307254 intergenic not near genes chr3R_6_26305001 chr3R_26305001 RAL-340_100b 3507 chr3R 26349248 26349263 chr3R 26349364 26349384 10 118 7.5 0.0 3.8 2.1 136 chr3R 26349248 intron CG33970 + chr3R 26349316 intron CG33970 + chr3R 26349384 intron CG33970 + chr3R_10_26345001 chr3R_26345001 RAL-340_100b 3508 chr3R 26365084 26365142 chr3R 26365194 26365240 8 104 3.0 4.5 3.8 1.7 156 chr3R 26365084 intergenic not near genes chr3R 26365162 intergenic not near genes chr3R 26365240 intergenic not near genes chr3R_8_26365001 chr3R_26365001 RAL-340_100b 3509 chr3R 26370331 26370348 chr3R 26370433 26370458 11 108 0.0 8.5 4.2 2.1 127 chr3R 26370331 intergenic not near genes chr3R 26370394 intergenic not near genes chr3R 26370458 intergenic not near genes chr3R_11_26370001 chr3R_26370001 RAL-340_100b 3510 chr3R 26370349 26370354 chr3R 26370427 26370464 12 105 0.0 5.5 2.8 3.2 115 chr3R 26370349 intergenic not near genes chr3R 26370406 intergenic not near genes chr3R 26370464 intergenic not near genes chr3R_12_26370001 chr3R_26370001 RAL-340_100b 3511 chr3R 26376301 26376309 chr3R 26385486 26385493 roo 6 9185 22.5 1.5 12.0 0.5 9192 chr3R 26376301 intergenic not near genes chr3R 26380897 intergenic not near genes chr3R 26385493 intergenic not near genes chr3R_6_26380001 chr3R_26380001 RAL-340_100b 3512 chr3R 26376311 26376354 chr3R 26385485 26385526 roo 15 9175 10.0 1.5 5.8 2.2 9215 chr3R 26376311 intergenic not near genes chr3R 26380918 intergenic not near genes chr3R 26385526 intergenic not near genes chr3R_15_26380001 chr3R_26380001 RAL-340_100b 3513 chr3R 26412640 26412672 chr3R 26412748 26412770 7 106 4.0 2.5 3.2 1.7 130 chr3R 26412640 intergenic not near genes chr3R 26412705 intergenic not near genes chr3R 26412770 intergenic not near genes chr3R_7_26410001 chr3R_26410001 RAL-340_100b 3514 chr3R 26442381 26442428 chr3R 26442526 26442553 11 142 4.0 8.5 6.2 1.5 172 chr3R 26442381 intron tx + chr3R 26442467 intron tx + chr3R 26442553 intron tx + chr3R_11_26440001 chr3R_26440001 RAL-340_100b 3515 chr3R 26456622 26456676 chr3R 26456725 26456767 19 95 6.5 9.0 7.8 2.2 145 chr3R 26456622 intergenic CG14237 +,Pdf - chr3R 26456694 intergenic CG14237 + chr3R 26456767 intergenic CG14237 + chr3R_19_26455001 chr3R_26455001 RAL-340_100b 3516 chr3R 26510481 26510529 chr3R 26519566 26519615 roo 13 9086 12.0 7.5 9.8 1.2 9134 chr3R 26510481 intron plum - chr3R 26515048 intron plum - chr3R 26519615 intron,5` UTR plum -,CR45226 + chr3R_13_26515001 chr3R_26515001 RAL-340_100b 3517 chr3R 26542019 26542077 chr3R 26542135 26542193 31 110 6.5 2.5 4.5 5.6 174 chr3R 26542019 intron scrib + chr3R 26542106 intron scrib + chr3R 26542193 intron scrib + chr3R_31_26540001 chr3R_26540001 RAL-340_100b 3518 chr3R 26545996 26546009 chr3R 26546198 26546216 4 206 4.5 12.0 8.2 0.4 220 chr3R 26545996 intron scrib + chr3R 26546106 intron scrib + chr3R 26546216 intron scrib + chr3R_4_26545001 chr3R_26545001 RAL-340_100b 3519 chr3R 26546010 26546019 chr3R 26546197 26546226 6 202 3.5 11.5 7.5 0.7 216 chr3R 26546010 intron scrib + chr3R 26546118 intron scrib + chr3R 26546226 intron scrib + chr3R_6_26545001 chr3R_26545001 RAL-340_100b 3520 chr3R 26558300 26558352 chr3R 26565638 26565679 Stalker4 9 7333 7.0 5.0 6.0 1.3 7379 chr3R 26558300 intron scrib + chr3R 26561990 intron scrib + chr3R 26565679 intron scrib + chr3R_9_26560001 chr3R_26560001 RAL-340_100b 3521 chr3R 26574985 26575039 chr3R 26575086 26575143 31 101 5.0 9.5 7.2 3.8 158 chr3R 26574985 exon scrib + chr3R 26575064 intron scrib + chr3R 26575143 intron scrib + chr3R_31_26575001 chr3R_26575001 RAL-340_100b 3522 chr3R 26641615 26641618 chr3R 26641727 26641730 4 112 24.5 5.5 15.0 0.2 115 chr3R 26641615 intergenic not near genes chr3R 26641672 intergenic not near genes chr3R 26641730 intergenic not near genes chr3R_4_26640001 chr3R_26640001 RAL-340_100b 3523 chr3R 26641623 26641664 chr3R 26641726 26641776 9 110 11.5 5.0 8.2 1.0 153 chr3R 26641623 intergenic not near genes chr3R 26641700 intergenic not near genes chr3R 26641776 intergenic not near genes chr3R_9_26640001 chr3R_26640001 RAL-340_100b 3524 chr3R 26642706 26642741 chr3R 26643124 26643160 jockey 7 418 9.5 8.5 9.0 0.7 454 chr3R 26642706 intergenic not near genes chr3R 26642933 intergenic not near genes chr3R 26643160 intergenic not near genes chr3R_7_26640001 chr3R_26640001 RAL-340_100b 3525 chr3R 21907534 21907535 chr3R 26659332 26659332 7 4751798 64.0 63.0 63.5 0.1 4751798 chr3R 21907534 intergenic CG6678 + chr3R 24283433 intergenic CR45662 - chr3R 26659332 intron beat-VII - chr3R_7_24280001 chr3R_24280001 RAL-340_100b 3526 chr3R 21907534 21907535 chr3R 26659333 26659333 4 4751798 64.0 64.0 64.0 0.1 4751799 chr3R 21907534 intergenic CG6678 + chr3R 24283434 intergenic CR45662 - chr3R 26659333 intron beat-VII - chr3R_4_24280001 chr3R_24280001 RAL-340_100b 3527 chr3R 21907534 21907536 chr3R 26659334 26659337 31 4751801 64.0 65.5 64.8 0.5 4751803 chr3R 21907534 intergenic CG6678 + chr3R 24283436 intergenic CR45662 - chr3R 26659337 intron beat-VII - chr3R_31_24280001 chr3R_24280001 RAL-340_100b 3528 chr3R 26660620 26660673 chr3R 26660729 26660768 15 101 4.0 12.5 8.2 1.6 148 chr3R 26660620 intron beat-VII - chr3R 26660694 intron beat-VII - chr3R 26660768 intron beat-VII - chr3R_15_26660001 chr3R_26660001 RAL-340_100b 3529 chr3R 26728457 26728512 chr3R 26728568 26728607 19 101 3.0 12.0 7.5 2.2 150 chr3R 26728457 intron CG14246 + chr3R 26728532 intron CG14246 + chr3R 26728607 intron CG14246 + chr3R_19_26725001 chr3R_26725001 RAL-340_100b 3530 chr3R 26744130 26744172 chr3R 26744269 26744278 22 135 4.0 16.0 10.0 2.0 148 chr3R 26744130 intergenic not near genes chr3R 26744204 intergenic not near genes chr3R 26744278 intergenic not near genes chr3R_22_26740001 chr3R_26740001 RAL-340_100b 3531 chr3R 26755700 26755709 chr3R 26755783 26755810 5 93 13.5 8.5 11.0 0.4 110 chr3R 26755700 intergenic not near genes chr3R 26755755 intergenic not near genes chr3R 26755810 intergenic not near genes chr3R_5_26755001 chr3R_26755001 RAL-340_100b 3532 chr3R 26755715 26755724 chr3R 26755771 26755825 4 73 6.5 5.0 5.8 0.6 110 chr3R 26755715 intergenic not near genes chr3R 26755770 intergenic not near genes chr3R 26755825 intergenic not near genes chr3R_4_26755001 chr3R_26755001 RAL-340_100b 3533 chr3R 26770223 26770230 chr3R 26770323 26770324 5 100 22.0 10.5 16.2 0.3 101 chr3R 26770223 intergenic CR45563 + chr3R 26770274 intergenic CR45563 + chr3R 26770324 intergenic CR45563 + chr3R_5_26770001 chr3R_26770001 RAL-340_100b 3534 chr3R 26770231 26770272 chr3R 26770322 26770363 18 94 8.0 9.5 8.8 1.8 132 chr3R 26770231 intergenic CR45563 + chr3R 26770297 intergenic CR45563 + chr3R 26770363 intergenic not near genes chr3R_18_26770001 chr3R_26770001 RAL-340_100b 3535 chr3R 26810527 26810579 chr3R 26811037 26811089 roo 25 509 11.5 9.0 10.2 2.2 562 chr3R 26810527 intron Tl + chr3R 26810808 intron Tl + chr3R 26811089 intron Tl + chr3R_25_26810001 chr3R_26810001 RAL-340_100b 3536 chr3R 26816737 26816760 chr3R 26816839 26816842 8 99 20.5 27.0 23.8 0.3 105 chr3R 26816737 intron Tl + chr3R 26816790 intron Tl + chr3R 26816842 intron Tl + chr3R_8_26815001 chr3R_26815001 RAL-340_100b 3537 chr3R 26819722 26819755 chr3R 26819825 26819854 9 101 5.5 13.5 9.5 0.9 132 chr3R 26819722 intron Tl + chr3R 26819788 intron Tl + chr3R 26819854 intron Tl + chr3R_9_26815001 chr3R_26815001 RAL-340_100b 3538 chr3R 26825046 26825063 chr3R 26825147 26825164 6 101 15.0 8.0 11.5 0.5 118 chr3R 26825046 intron Tl + chr3R 26825105 intron Tl + chr3R 26825164 intron Tl + chr3R_6_26825001 chr3R_26825001 RAL-340_100b 3539 chr3R 26825064 26825079 chr3R 26825140 26825180 7 96 12.0 5.0 8.5 0.7 116 chr3R 26825064 intron Tl + chr3R 26825122 intron Tl + chr3R 26825180 intron Tl + chr3R_7_26825001 chr3R_26825001 RAL-340_100b 3540 chr3R 26827340 26827396 chr3R 26827443 26827492 19 94 4.0 9.5 6.8 2.4 152 chr3R 26827340 intron Tl + chr3R 26827416 intron Tl + chr3R 26827492 intron Tl + chr3R_19_26825001 chr3R_26825001 RAL-340_100b 3541 chr3R 26845547 26845558 chr3R 26845652 26845663 5 105 22.5 9.0 15.8 0.3 116 chr3R 26845547 intron Lerp - chr3R 26845605 intron Lerp - chr3R 26845663 intron Lerp - chr3R_5_26845001 chr3R_26845001 RAL-340_100b 3542 chr3R 26845568 26845572 chr3R 26845657 26845677 9 101 15.0 9.5 12.2 0.7 109 chr3R 26845568 intron Lerp - chr3R 26845622 intron Lerp - chr3R 26845677 intron Lerp - chr3R_9_26845001 chr3R_26845001 RAL-340_100b 3543 chr3R 26845576 26845601 chr3R 26845653 26845706 17 101 7.5 9.5 8.5 1.8 130 chr3R 26845576 intron Lerp - chr3R 26845641 intron Lerp - chr3R 26845706 intron Lerp - chr3R_17_26845001 chr3R_26845001 RAL-340_100b 3544 chr3R 26885671 26885687 chr3R 26885794 26885812 6 122 16.5 9.0 12.8 0.4 141 chr3R 26885671 intron T48 + chr3R 26885742 intron T48 + chr3R 26885812 intron T48 + chr3R_6_26885001 chr3R_26885001 RAL-340_100b 3545 chr3R 26885689 26885715 chr3R 26885792 26885840 23 120 7.5 9.0 8.2 2.5 151 chr3R 26885689 intron T48 + chr3R 26885764 intron T48 + chr3R 26885840 intron T48 + chr3R_23_26885001 chr3R_26885001 RAL-340_100b 3546 chr3R 27007390 27007416 chr3R 27016550 27016576 roo 5 9157 7.5 6.5 7.0 0.6 9186 chr3R 27007390 intron RYa-R + chr3R 27011983 intron RYa-R + chr3R 27016576 intron RYa-R + chr3R_5_27010001 chr3R_27010001 RAL-340_100b 3547 chr3R 27007417 27007426 chr3R 27016542 27016574 roo 5 9147 7.0 6.0 6.5 0.7 9157 chr3R 27007417 intron RYa-R + chr3R 27011996 intron RYa-R + chr3R 27016574 intron RYa-R + chr3R_5_27010001 chr3R_27010001 RAL-340_100b 3548 chr3R 27027659 27027704 chr3R 27027768 27027811 15 107 6.5 4.5 5.5 2.3 152 chr3R 27027659 intron RYa-R + chr3R 27027735 intron RYa-R + chr3R 27027811 intron RYa-R + chr3R_15_27025001 chr3R_27025001 RAL-340_100b 3549 chr3R 27028717 27028744 chr3R 27028803 27028848 10 102 10.0 5.5 7.8 1.1 131 chr3R 27028717 intron RYa-R + chr3R 27028782 intron RYa-R + chr3R 27028848 intron RYa-R + chr3R_10_27025001 chr3R_27025001 RAL-340_100b 3550 chr3R 27035844 27035866 chr3R 27035957 27035979 5 110 10.0 9.0 9.5 0.5 135 chr3R 27035844 intron RYa-R + chr3R 27035912 intron RYa-R + chr3R 27035979 intron RYa-R + chr3R_5_27035001 chr3R_27035001 RAL-340_100b 3551 chr3R 27035873 27035882 chr3R 27035951 27035955 15 90 7.5 7.0 7.2 1.8 82 chr3R 27035873 intron RYa-R + chr3R 27035914 intron RYa-R + chr3R 27035955 intron RYa-R + chr3R_15_27035001 chr3R_27035001 RAL-340_100b 3552 chr3R 27140492 27140495 chr3R 27148127 27148130 412 4 7634 49.0 18.5 33.8 0.1 7638 chr3R 27140492 intron CG6051 - chr3R 27144311 intron CG6051 - chr3R 27148130 intron CG6051 - chr3R_4_27140001 chr3R_27140001 RAL-340_100b 3553 chr3R 27140496 27140539 chr3R 27148125 27148167 412 39 7632 24.0 18.5 21.2 1.8 7671 chr3R 27140496 intron CG6051 - chr3R 27144332 intron CG6051 - chr3R 27148167 intron CG6051 - chr3R_39_27140001 chr3R_27140001 RAL-340_100b 3554 chr3R 27254258 27254316 chr3R 27254404 27254427 17 139 6.5 9.0 7.8 1.9 169 chr3R 27254258 intron TfIIA-L + chr3R 27254342 intron TfIIA-L + chr3R 27254427 intron TfIIA-L + chr3R_17_27250001 chr3R_27250001 RAL-340_100b 3555 chr3R 27293772 27293828 chr3R 27293897 27293938 23 123 8.0 8.5 8.2 2.5 166 chr3R 27293772 intergenic not near genes chr3R 27293855 intergenic CG3339 - chr3R 27293938 intergenic CG3339 - chr3R_23_27290001 chr3R_27290001 RAL-340_100b 3556 chr3R 27327400 27327457 chr3R 27327504 27327540 24 97 6.5 4.0 5.2 3.9 140 chr3R 27327400 intergenic not near genes chr3R 27327470 intergenic not near genes chr3R 27327540 intergenic not near genes chr3R_24_27325001 chr3R_27325001 RAL-340_100b 3557 chr3R 27329450 27329494 chr3R 27329552 27329596 14 99 9.0 5.5 7.2 1.7 146 chr3R 27329450 intergenic CG3330 - chr3R 27329523 intergenic CG3330 - chr3R 27329596 intergenic CG3330 - chr3R_14_27325001 chr3R_27325001 RAL-340_100b 3558 chr3R 27335927 27335954 chr3R 27336033 27336059 9 106 5.0 0.0 2.5 2.6 132 chr3R 27335927 intergenic not near genes chr3R 27335993 intergenic not near genes chr3R 27336059 intergenic not near genes chr3R_9_27335001 chr3R_27335001 RAL-340_100b 3559 chr3R 27342772 27342822 chr3R 27351378 27351428 Tirant 19 8602 10.5 10.0 10.2 1.7 8656 chr3R 27342772 intron CG42534 + chr3R 27347100 intron CG42534 + chr3R 27351428 intron CG42534 + chr3R_19_27345001 chr3R_27345001 RAL-340_100b 3560 chr3R 21907534 21907536 chr3R 27359799 27359810 4 5452270 64.0 86.5 75.2 0.1 5452276 chr3R 21907534 intergenic CG6678 + chr3R 24633672 exon atl + chr3R 27359810 intron CG42534 + chr3R_4_24630001 chr3R_24630001 RAL-340_100b 3561 chr3R 27371209 27371256 chr3R 27371332 27371380 41 120 15.5 12.0 13.8 2.8 171 chr3R 27371209 3` UTR CG42534 + chr3R 27371294 3` UTR CG42534 + chr3R 27371380 intergenic CG42534 + chr3R_41_27370001 chr3R_27370001 RAL-340_100b 3562 chr3R 27377944 27377945 chr3R 27378047 27378049 4 103 24.5 15.5 20.0 0.2 105 chr3R 27377944 3` UTR side - chr3R 27377996 3` UTR side - chr3R 27378049 3` UTR side - chr3R_4_27375001 chr3R_27375001 RAL-340_100b 3563 chr3R 27377947 27377993 chr3R 27378042 27378072 28 99 10.0 13.5 11.8 2.2 125 chr3R 27377947 3` UTR side - chr3R 27378010 3` UTR side - chr3R 27378072 3` UTR side - chr3R_28_27375001 chr3R_27375001 RAL-340_100b 3564 chr3R 27435796 27435843 chr3R 27443867 27443914 15 8074 59.5 64.5 62.0 0.2 8118 chr3R 27435796 intron side - chr3R 27439855 intron CG44290 - chr3R 27443914 intergenic not near genes chr3R_15_27435001 chr3R_27435001 RAL-340_100b 3565 chr3R 27456108 27456167 chr3R 27456220 27456279 33 108 9.5 7.5 8.5 3.5 171 chr3R 27456108 intergenic not near genes chr3R 27456194 intergenic not near genes chr3R 27456279 intergenic not near genes chr3R_33_27455001 chr3R_27455001 RAL-340_100b 3566 chr3R 27457843 27457852 chr3R 27457960 27457969 6 117 18.5 14.5 16.5 0.3 126 chr3R 27457843 intergenic not near genes chr3R 27457906 intergenic not near genes chr3R 27457969 intergenic not near genes chr3R_6_27455001 chr3R_27455001 RAL-340_100b 3567 chr3R 27457853 27457869 chr3R 27457953 27457986 11 113 14.5 10.0 12.2 0.8 133 chr3R 27457853 intergenic not near genes chr3R 27457920 intergenic not near genes chr3R 27457986 intergenic not near genes chr3R_11_27455001 chr3R_27455001 RAL-340_100b 3568 chr3R 27457870 27457883 chr3R 27457985 27457990 6 112 9.0 31.5 20.2 0.3 120 chr3R 27457870 intergenic not near genes chr3R 27457930 intergenic not near genes chr3R 27457990 intergenic not near genes chr3R_6_27455001 chr3R_27455001 RAL-340_100b 3569 chr3R 27457892 27457896 chr3R 27457983 27458008 4 108 5.5 30.5 18.0 0.2 116 chr3R 27457892 intergenic not near genes chr3R 27457950 intergenic not near genes chr3R 27458008 intergenic not near genes chr3R_4_27455001 chr3R_27455001 RAL-340_100b 3570 chr3R 27457897 27457900 chr3R 27458006 27458014 4 113 4.0 40.5 22.2 0.2 117 chr3R 27457897 intergenic not near genes chr3R 27457956 intergenic not near genes chr3R 27458014 intergenic not near genes chr3R_4_27455001 chr3R_27455001 RAL-340_100b 3571 chr3R 27492353 27492410 chr3R 27492464 27492507 22 101 6.0 5.0 5.5 3.4 154 chr3R 27492353 intergenic not near genes chr3R 27492430 intergenic not near genes chr3R 27492507 intergenic not near genes chr3R_22_27490001 chr3R_27490001 RAL-340_100b 3572 chr3R 27496566 27496602 chr3R 27496696 27496727 13 129 17.5 5.5 11.5 1.0 161 chr3R 27496566 intergenic not near genes chr3R 27496646 intergenic not near genes chr3R 27496727 intergenic not near genes chr3R_13_27495001 chr3R_27495001 RAL-340_100b 3573 chr3R 27521143 27521183 chr3R 27530377 27530417 roo 7 9230 10.5 6.5 8.5 0.7 9274 chr3R 27521143 intron CG12885 + chr3R 27525780 intron CG12885 + chr3R 27530417 intron CG12885 + chr3R_7_27525001 chr3R_27525001 RAL-340_100b 3574 chr3R 27570248 27570273 chr3R 27570358 27570383 9 107 14.0 11.5 12.8 0.7 135 chr3R 27570248 intron wdb - chr3R 27570316 intron wdb - chr3R 27570383 intron wdb - chr3R_9_27570001 chr3R_27570001 RAL-340_100b 3575 chr3R 27570276 27570300 chr3R 27570351 27570355 19 91 6.0 9.0 7.5 2.2 79 chr3R 27570276 intron wdb - chr3R 27570316 intron wdb - chr3R 27570355 intron wdb - chr3R_19_27570001 chr3R_27570001 RAL-340_100b 3576 chr3R 27574093 27574131 chr3R 27574505 27574555 13 416 9.0 8.5 8.8 1.3 462 chr3R 27574093 intron wdb - chr3R 27574324 intron wdb - chr3R 27574555 intron wdb - chr3R_13_27570001 chr3R_27570001 RAL-340_100b 3577 chr3R 27613306 27613334 chr3R 27613410 27613427 20 103 11.0 23.5 17.2 1.1 121 chr3R 27613306 intron Tusp + chr3R 27613366 intron Tusp + chr3R 27613427 intron Tusp + chr3R_20_27610001 chr3R_27610001 RAL-340_100b 3578 chr3R 27643980 27644002 chr3R 27644095 27644118 18 112 13.0 11.5 12.2 1.4 138 chr3R 27643980 intron tau - chr3R 27644049 intron tau - chr3R 27644118 intron tau - chr3R_18_27640001 chr3R_27640001 RAL-340_100b 3579 chr3R 27705341 27705391 chr3R 27705446 27705491 18 100 4.5 7.0 5.8 2.6 150 chr3R 27705341 exon CG12428 - chr3R 27705416 intron CG12428 - chr3R 27705491 exon CG12428 - chr3R_18_27705001 chr3R_27705001 RAL-340_100b 3580 chr3R 27706753 27706808 chr3R 27706854 27706888 20 99 10.5 5.0 7.8 2.3 135 chr3R 27706753 intergenic CG12428 -,CG12877 + chr3R 27706820 intergenic CG12428 -,CG12877 + chr3R 27706888 intergenic CG12428 -,CG12877 + chr3R_20_27705001 chr3R_27705001 RAL-340_100b 3581 chr3R 27716508 27716541 chr3R 27716618 27716682 6 122 16.0 0.0 8.0 0.7 174 chr3R 27716508 intergenic not near genes chr3R 27716595 intergenic not near genes chr3R 27716682 intergenic not near genes chr3R_6_27715001 chr3R_27715001 RAL-340_100b 3582 chr3R 27716554 27716563 chr3R 27716688 27716689 6 137 10.0 9.5 9.8 0.6 135 chr3R 27716554 intergenic not near genes chr3R 27716622 intergenic not near genes chr3R 27716689 intergenic not near genes chr3R_6_27715001 chr3R_27715001 RAL-340_100b 3583 chr3R 27716566 27716625 chr3R 27716682 27716731 7 114 0.0 7.0 3.5 1.6 165 chr3R 27716566 intergenic not near genes chr3R 27716648 intergenic not near genes chr3R 27716731 intergenic not near genes chr3R_7_27715001 chr3R_27715001 RAL-340_100b 3584 chr3R 27725544 27725597 chr3R 27731011 27731051 I-element 7 5464 5.0 0.0 2.5 2.0 5507 chr3R 27725544 intergenic not near genes chr3R 27728298 intergenic not near genes chr3R 27731051 intergenic not near genes chr3R_7_27725001 chr3R_27725001 RAL-340_100b 3585 chr3R 27779257 27779284 chr3R 27779349 27779389 13 102 9.5 14.5 12.0 1.0 132 chr3R 27779257 exon CG34353 - chr3R 27779323 intron CG34353 - chr3R 27779389 intron CG34353 - chr3R_13_27775001 chr3R_27775001 RAL-340_100b 3586 chr3R 27791627 27791647 chr3R 27794792 27794792 Rt1c 5 3157 49.5 60.5 55.0 0.1 3165 chr3R 27791627 intron CG34353 - chr3R 27793210 intron CG34353 - chr3R 27794792 intron CG34353 - chr3R_5_27790001 chr3R_27790001 RAL-340_100b 3587 chr3R 27856746 27856786 chr3R 27858243 27858293 hopper2 13 1504 22.5 8.0 15.2 0.8 1547 chr3R 27856746 intron CG34353 - chr3R 27857520 intron CG34353 - chr3R 27858293 intron CG34353 - chr3R_13_27855001 chr3R_27855001 RAL-340_100b 3588 chr3R 27862937 27862983 chr3R 27868262 27868271 Transpac 19 5322 10.5 12.0 11.2 1.6 5334 chr3R 27862937 intron CG34353 - chr3R 27865604 intron CG34353 - chr3R 27868271 intron CG34353 - chr3R_19_27865001 chr3R_27865001 RAL-340_100b 3589 chr3R 27871030 27871088 chr3R 27871156 27871214 24 123 7.5 15.5 11.5 1.9 184 chr3R 27871030 intron CG34353 - chr3R 27871122 intron CG34353 - chr3R 27871214 intron CG34353 - chr3R_24_27870001 chr3R_27870001 RAL-340_100b 3590 chr3R 27875693 27875729 chr3R 27882756 27882809 297 12 7079 10.0 10.5 10.2 1.1 7116 chr3R 27875693 intron CG34353 - chr3R 27879251 intron CG34353 - chr3R 27882809 intron CG34353 - chr3R_12_27875001 chr3R_27875001 RAL-340_100b 3591 chr3R 28016628 28016659 chr3R 28016743 28016774 16 113 14.0 3.5 8.8 1.6 146 chr3R 28016628 intergenic not near genes chr3R 28016701 intergenic not near genes chr3R 28016774 intergenic not near genes chr3R_16_28015001 chr3R_28015001 RAL-340_100b 3592 chr3R 28016670 28016679 chr3R 28016769 28016794 6 112 10.0 7.0 8.5 0.6 124 chr3R 28016670 intergenic not near genes chr3R 28016732 intergenic not near genes chr3R 28016794 intergenic not near genes chr3R_6_28015001 chr3R_28015001 RAL-340_100b 3593 chr3R 28054423 28054475 chr3R 28054517 28054576 56 91 11.5 9.5 10.5 4.9 153 chr3R 28054423 intron CG34362 + chr3R 28054500 intron CG34362 + chr3R 28054576 intron CG34362 + chr3R_56_28050001 chr3R_28050001 RAL-340_100b 3594 chr3R 28066755 28066806 chr3R 28066863 28066903 16 103 6.0 3.5 4.8 2.8 148 chr3R 28066755 intron CG34362 + chr3R 28066829 intron CG34362 + chr3R 28066903 intron CG34362 + chr3R_16_28065001 chr3R_28065001 RAL-340_100b 3595 chr3R 28068480 28068526 chr3R 28073943 28073975 I-element 13 5462 1.0 13.0 7.0 1.6 5495 chr3R 28068480 intron CG34362 + chr3R 28071228 intron CG34362 + chr3R 28073975 intron CG34362 + chr3R_13_28070001 chr3R_28070001 RAL-340_100b 3596 chr3R 28103305 28103352 chr3R 28103418 28103458 11 111 7.5 10.0 8.8 1.1 153 chr3R 28103305 intergenic not near genes chr3R 28103382 intergenic not near genes chr3R 28103458 intergenic not near genes chr3R_11_28100001 chr3R_28100001 RAL-340_100b 3597 chr3R 28153531 28153581 chr3R 28153641 28153695 19 106 7.0 6.0 6.5 2.5 164 chr3R 28153531 intron CG34354 + chr3R 28153613 intron CG34354 + chr3R 28153695 intron CG34354 + chr3R_19_28150001 chr3R_28150001 RAL-340_100b 3598 chr3R 28173651 28173697 chr3R 28181106 28181136 mdg1 41 7452 9.0 7.5 8.2 4.5 7485 chr3R 28173651 intron CG34354 + chr3R 28177394 intron CG34354 + chr3R 28181136 intron CG34354 + chr3R_41_28175001 chr3R_28175001 RAL-340_100b 3599 chr3R 28253346 28253357 chr3R 28255848 28255889 jockey 10 2518 10.0 8.5 9.2 1.0 2543 chr3R 28253346 intergenic not near genes chr3R 28254618 intergenic not near genes chr3R 28255889 intergenic not near genes chr3R_10_28250001 chr3R_28250001 RAL-340_100b 3600 chr3R 28253364 28253369 chr3R 28255884 28255904 jockey 4 2531 8.0 14.5 11.2 0.3 2540 chr3R 28253364 intergenic not near genes chr3R 28254634 intergenic not near genes chr3R 28255904 intergenic not near genes chr3R_4_28250001 chr3R_28250001 RAL-340_100b 3601 chr3R 28282982 28283018 chr3R 28283621 28283666 18 650 4.5 9.0 6.8 2.3 684 chr3R 28282982 exon CG34436 + chr3R 28283324 exon CG34436 + chr3R 28283666 intergenic CG34437 +,CG34436 + chr3R_18_28280001 chr3R_28280001 RAL-340_100b 3602 chr3R 28302084 28302130 chr3R 28302548 28302594 jockey 15 459 6.5 12.0 9.2 1.5 510 chr3R 28302084 intergenic not near genes chr3R 28302339 intergenic not near genes chr3R 28302594 intergenic not near genes chr3R_15_28300001 chr3R_28300001 RAL-340_100b 3603 chr3R 28331492 28331530 chr3R 28331596 28331634 7 103 6.0 10.5 8.2 0.8 142 chr3R 28331492 intron larp - chr3R 28331563 intron larp - chr3R 28331634 intron larp - chr3R_7_28330001 chr3R_28330001 RAL-340_100b 3604 chr3R 28345624 28345674 chr3R 28345725 28345775 19 100 10.5 11.5 11.0 1.6 151 chr3R 28345624 intergenic Moca-cyp + chr3R 28345700 intergenic not near genes chr3R 28345775 intergenic not near genes chr3R_19_28345001 chr3R_28345001 RAL-340_100b 3605 chr3R 28390099 28390143 chr3R 28390192 28390207 24 88 14.5 6.5 10.5 2.1 108 chr3R 28390099 intergenic not near genes chr3R 28390153 intergenic not near genes chr3R 28390207 intergenic not near genes chr3R_24_28390001 chr3R_28390001 RAL-340_100b 3606 chr3R 28393027 28393078 chr3R 28393366 28393392 17 331 12.5 3.5 8.0 1.9 365 chr3R 28393027 intergenic not near genes chr3R 28393210 intergenic not near genes chr3R 28393392 intergenic not near genes chr3R_17_28390001 chr3R_28390001 RAL-340_100b 3607 chr3R 28393675 28393731 chr3R 28393797 28393856 32 124 7.0 10.5 8.8 3.3 181 chr3R 28393675 intergenic not near genes chr3R 28393766 intergenic not near genes chr3R 28393856 intergenic not near genes chr3R_32_28390001 chr3R_28390001 RAL-340_100b 3608 chr3R 28407690 28407739 chr3R 28407791 28407817 19 103 6.5 11.5 9.0 1.9 127 chr3R 28407690 intergenic not near genes chr3R 28407754 intergenic not near genes chr3R 28407817 intergenic not near genes chr3R_19_28405001 chr3R_28405001 RAL-340_100b 3609 chr3R 28558179 28558205 chr3R 28558290 28558316 14 110 17.0 8.5 12.8 1.0 137 chr3R 28558179 intergenic not near genes chr3R 28558248 intergenic not near genes chr3R 28558316 intergenic not near genes chr3R_14_28555001 chr3R_28555001 RAL-340_100b 3610 chr3R 28594075 28594130 chr3R 28594179 28594234 15 97 3.5 3.0 3.2 3.6 159 chr3R 28594075 5` UTR CR43440 + chr3R 28594154 5` UTR CR43440 + chr3R 28594234 5` UTR CR43440 + chr3R_15_28590001 chr3R_28590001 RAL-340_100b 3611 chr3R 28597468 28597522 chr3R 28597570 28597594 37 95 18.0 12.0 15.0 2.3 126 chr3R 28597468 intergenic not near genes chr3R 28597531 intergenic not near genes chr3R 28597594 intergenic Noa36 - chr3R_37_28595001 chr3R_28595001 RAL-340_100b 3612 chr3R 28617122 28617172 chr3R 28617306 28617333 17 176 6.5 10.5 8.5 1.8 211 chr3R 28617122 intron CG10011 - chr3R 28617228 intron CG10011 - chr3R 28617333 intron CG10011 - chr3R_17_28615001 chr3R_28615001 RAL-340_100b 3613 chr3R 28673553 28673593 chr3R 28673711 28673732 20 165 12.0 9.0 10.5 1.7 179 chr3R 28673553 intergenic not near genes chr3R 28673642 intergenic not near genes chr3R 28673732 intergenic not near genes chr3R_20_28670001 chr3R_28670001 RAL-340_100b 3614 chr3R 28711717 28711771 chr3R 28711828 28711843 12 102 4.5 10.0 7.2 1.5 126 chr3R 28711717 intron htt + chr3R 28711780 intron htt + chr3R 28711843 intron htt + chr3R_12_28710001 chr3R_28710001 RAL-340_100b 3615 chr3R 28712855 28712879 chr3R 28712968 28712988 8 113 9.5 0.5 5.0 1.3 133 chr3R 28712855 intron htt + chr3R 28712922 intron htt + chr3R 28712988 intron htt + chr3R_8_28710001 chr3R_28710001 RAL-340_100b 3616 chr3R 28736187 28736237 chr3R 28736297 28736335 13 107 2.0 10.5 6.2 1.8 148 chr3R 28736187 intergenic not near genes chr3R 28736261 intergenic not near genes chr3R 28736335 intergenic not near genes chr3R_13_28735001 chr3R_28735001 RAL-340_100b 3617 chr3R 28758262 28758298 chr3R 28763904 28763905 roo 7 5635 11.0 0.0 5.5 1.1 5643 chr3R 28758262 intergenic aqrs - chr3R 28761084 intergenic not near genes chr3R 28763905 intergenic not near genes chr3R_7_28760001 chr3R_28760001 RAL-340_100b 3618 chr3R 28758309 28758315 chr3R 28771333 28771347 Stalker4 5 13030 8.0 7.0 7.5 0.6 13038 chr3R 28758309 intergenic aqrs - chr3R 28764828 intergenic not near genes chr3R 28771347 intergenic not near genes chr3R_5_28760001 chr3R_28760001 RAL-340_100b 3619 chr3R 28763900 28763914 chr3R 28771353 28771377 Stalker4 5 7462 0.0 7.0 3.5 1.1 7477 chr3R 28763900 intergenic not near genes chr3R 28767638 intergenic not near genes chr3R 28771377 intergenic not near genes chr3R_5_28765001 chr3R_28765001 RAL-340_100b 3620 chr3R 28792862 28792903 chr3R 28797967 28797995 jockey 31 5103 9.5 9.5 9.5 3.0 5133 chr3R 28792862 intergenic not near genes chr3R 28795428 intergenic not near genes chr3R 28797995 intergenic not near genes chr3R_31_28795001 chr3R_28795001 RAL-340_100b 3621 chr3R 28811548 28811602 chr3R 28811719 28811773 9 170 3.5 3.5 3.5 2.0 225 chr3R 28811548 intergenic wdn - chr3R 28811660 intergenic wdn -,CG1646 + chr3R 28811773 intergenic CG1646 +,wdn - chr3R_9_28810001 chr3R_28810001 RAL-340_100b 3622 chr3R 21907535 21907536 chr3R 28831770 28831797 5 6924256 64.0 75.0 69.5 0.1 6924262 chr3R 21907535 intergenic CG6678 + chr3R 25369666 intron Fur1 - chr3R 28831797 intron WASp - chr3R_5_25365001 chr3R_25365001 RAL-340_100b 3623 chr3R 21907534 21907536 chr3R 28831798 28831799 39 6924264 64.0 70.5 67.2 0.6 6924265 chr3R 21907534 intergenic CG6678 + chr3R 25369666 intron Fur1 - chr3R 28831799 intron WASp - chr3R_39_25365001 chr3R_25365001 RAL-340_100b 3624 chr3R 21907534 21907536 chr3R 28831801 28831801 123 6924266 64.0 67.5 65.8 1.8 6924267 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831801 intron WASp - chr3R_123_25365001 chr3R_25365001 RAL-340_100b 3625 chr3R 15286987 15286988 chr3R 28831802 28831802 4 13544814 61.5 67.5 64.5 0.1 13544815 chr3R 15286987 intron Tm1 + chr3R 22059394 intron how + chr3R 28831802 intron WASp - chr3R_4_22055001 chr3R_22055001 RAL-340_100b 3626 chr3R 21907534 21907537 chr3R 28831802 28831802 176 6924267 64.0 67.5 65.8 2.6 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_176_25365001 chr3R_25365001 RAL-340_100b 3627 chr3R 28862128 28862172 chr3R 28862225 28862274 11 101 2.0 4.0 3.0 2.8 146 chr3R 28862128 intron spg + chr3R 28862201 intron spg + chr3R 28862274 intron spg + chr3R_11_28860001 chr3R_28860001 RAL-340_100b 3628 chr3R 28968389 28968408 chr3R 28968491 28968509 10 102 15.0 1.0 8.0 1.1 120 chr3R 28968389 intron CG14521 - chr3R 28968449 intron CG14521 - chr3R 28968509 intron CG14521 - chr3R_10_28965001 chr3R_28965001 RAL-340_100b 3629 chr3R 28968414 28968445 chr3R 28968514 28968547 14 101 7.0 5.0 6.0 2.0 133 chr3R 28968414 intron CG14521 - chr3R 28968480 intron CG14521 - chr3R 28968547 intron CG14521 - chr3R_14_28965001 chr3R_28965001 RAL-340_100b 3630 chr3R 28989878 28989887 chr3R 28990078 28990087 5 200 32.5 11.5 22.0 0.2 209 chr3R 28989878 intergenic not near genes chr3R 28989982 intergenic not near genes chr3R 28990087 intergenic not near genes chr3R_5_28985001 chr3R_28985001 RAL-340_100b 3631 chr3R 28989891 28989905 chr3R 28990084 28990100 9 194 27.0 14.0 20.5 0.4 209 chr3R 28989891 intergenic not near genes chr3R 28989996 intergenic not near genes chr3R 28990100 intergenic not near genes chr3R_9_28985001 chr3R_28985001 RAL-340_100b 3632 chr3R 28989916 28989918 chr3R 28990081 28990118 4 188 16.0 12.5 14.2 0.3 202 chr3R 28989916 intergenic not near genes chr3R 28990017 intergenic not near genes chr3R 28990118 intergenic not near genes chr3R_4_28990001 chr3R_28990001 RAL-340_100b 3633 chr3R 21907534 21907536 chr3R 29013339 29013339 42 7105804 64.0 38.5 51.2 0.8 7105805 chr3R 21907534 intergenic CG6678 + chr3R 25460436 intron Fur1 - chr3R 29013339 intron wat - chr3R_42_25460001 chr3R_25460001 RAL-340_100b 3634 chr3R 21907534 21907536 chr3R 29013340 29013340 92 7105805 64.0 38.5 51.2 1.8 7105806 chr3R 21907534 intergenic CG6678 + chr3R 25460437 intron Fur1 - chr3R 29013340 intron wat - chr3R_92_25460001 chr3R_25460001 RAL-340_100b 3635 chr3R 29032726 29032766 chr3R 29032822 29032830 13 94 8.5 2.0 5.2 2.1 104 chr3R 29032726 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R 29032778 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R 29032830 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R_13_29030001 chr3R_29030001 RAL-340_100b 3636 chr3R 29070039 29070078 chr3R 29070145 29070184 21 105 9.5 4.5 7.0 2.6 145 chr3R 29070039 intron CG11873 + chr3R 29070112 intron CG11873 + chr3R 29070184 intron CG11873 + chr3R_21_29070001 chr3R_29070001 RAL-340_100b 3637 chr3R 29091428 29091435 chr3R 29091541 29091548 4 113 8.5 29.0 18.8 0.2 120 chr3R 29091428 intron CG11873 + chr3R 29091488 intron CG11873 + chr3R 29091548 intron CG11873 + chr3R_4_29090001 chr3R_29090001 RAL-340_100b 3638 chr3R 29094009 29094033 chr3R 29094248 29094255 4 232 15.0 19.5 17.2 0.2 246 chr3R 29094009 intron CG11873 + chr3R 29094132 intron CG11873 + chr3R 29094255 intron CG11873 + chr3R_4_29090001 chr3R_29090001 RAL-340_100b 3639 chr3R 29094038 29094048 chr3R 29094242 29094288 7 228 8.0 16.5 12.2 0.5 250 chr3R 29094038 intron CG11873 + chr3R 29094163 intron CG11873 + chr3R 29094288 intron CG11873 + chr3R_7_29090001 chr3R_29090001 RAL-340_100b 3640 chr3R 29176107 29176163 chr3R 29176220 29176222 12 107 17.5 10.0 13.8 0.8 115 chr3R 29176107 intron CG14509 - chr3R 29176164 intron CG14509 - chr3R 29176222 intron CG14509 - chr3R_12_29175001 chr3R_29175001 RAL-340_100b 3641 chr3R 29213036 29213091 chr3R 29213144 29213190 15 105 3.0 6.0 4.5 2.7 154 chr3R 29213036 intergenic not near genes chr3R 29213113 intergenic not near genes chr3R 29213190 intergenic not near genes chr3R_15_29210001 chr3R_29210001 RAL-340_100b 3642 chr3R 29237220 29237271 chr3R 29239266 29239284 20 2038 40.0 12.0 26.0 0.7 2064 chr3R 29237220 exon CG11951 - chr3R 29238252 intron CG11951 - chr3R 29239284 exon CG31427 - chr3R_20_29235001 chr3R_29235001 RAL-340_100b 3643 chr3R 29239201 29239244 chr3R 29245517 29245540 10 6305 12.0 34.0 23.0 0.4 6339 chr3R 29239201 exon CG31427 - chr3R 29242370 exon CG31445 - chr3R 29245540 exon SP1029 - chr3R_10_29240001 chr3R_29240001 RAL-340_100b 3644 chr3R 29237525 29237540 chr3R 29239408 29239423 4 1883 34.5 18.0 26.2 0.1 1898 chr3R 29237525 exon CG11951 - chr3R 29238474 intron CG11951 - chr3R 29239423 exon CG31427 - chr3R_4_29235001 chr3R_29235001 RAL-340_100b 3645 chr3R 29319809 29319833 chr3R 29320153 29320176 jockey 12 342 13.5 8.0 10.8 1.0 367 chr3R 29319809 intergenic Cnx99A - chr3R 29319992 intergenic Cnx99A - chr3R 29320176 intergenic not near genes chr3R_12_29315001 chr3R_29315001 RAL-340_100b 3646 chr3R 29319838 29319859 chr3R 29320145 29320177 jockey 9 328 7.5 6.5 7.0 1.1 339 chr3R 29319838 intergenic Cnx99A - chr3R 29320008 intergenic Cnx99A - chr3R 29320177 intergenic not near genes chr3R_9_29320001 chr3R_29320001 RAL-340_100b 3647 chr3R 29332258 29332309 chr3R 29332359 29332411 29 101 15.0 6.0 10.5 2.5 153 chr3R 29332258 intergenic not near genes chr3R 29332334 intergenic not near genes chr3R 29332411 intergenic not near genes chr3R_29_29330001 chr3R_29330001 RAL-340_100b 3648 chr3R 29348736 29348777 chr3R 29348843 29348855 12 94 6.0 8.0 7.0 1.5 119 chr3R 29348736 intergenic not near genes chr3R 29348796 intergenic not near genes chr3R 29348855 intergenic not near genes chr3R_12_29345001 chr3R_29345001 RAL-340_100b 3649 chr3R 21907534 21907536 chr3R 29362325 29362342 4 7454800 64.0 96.0 80.0 0.0 7454808 chr3R 21907534 intergenic CG6678 + chr3R 25634938 intergenic not near genes chr3R 29362342 intergenic not near genes chr3R_4_25630001 chr3R_25630001 RAL-340_100b 3650 chr3R 29365371 29365397 chr3R 29365473 29365504 7 102 14.0 6.5 10.2 0.6 133 chr3R 29365371 intergenic not near genes chr3R 29365438 intergenic not near genes chr3R 29365504 intergenic not near genes chr3R_7_29365001 chr3R_29365001 RAL-340_100b 3651 chr3R 29376335 29376360 chr3R 29376448 29376458 14 111 3.0 0.0 1.5 5.6 123 chr3R 29376335 intergenic not near genes chr3R 29376396 intergenic not near genes chr3R 29376458 intergenic not near genes chr3R_14_29375001 chr3R_29375001 RAL-340_100b 3652 chr3R 29406601 29406625 chr3R 29407909 29407931 jockey 14 1306 13.5 10.0 11.8 1.1 1330 chr3R 29406601 intron Ptp99A + chr3R 29407266 intron Ptp99A + chr3R 29407931 intron Ptp99A + chr3R_14_29405001 chr3R_29405001 RAL-340_100b 3653 chr3R 29406627 29406643 chr3R 29407900 29407929 jockey 14 1302 7.5 8.5 8.0 1.6 1302 chr3R 29406627 intron Ptp99A + chr3R 29407278 intron Ptp99A + chr3R 29407929 intron Ptp99A + chr3R_14_29405001 chr3R_29405001 RAL-340_100b 3654 chr3R 29449336 29449384 chr3R 29449439 29449464 20 101 15.0 6.5 10.8 1.7 128 chr3R 29449336 intron Ptp99A + chr3R 29449400 intron Ptp99A + chr3R 29449464 intron Ptp99A + chr3R_20_29445001 chr3R_29445001 RAL-340_100b 3655 chr3R 29471982 29472040 chr3R 29472100 29472102 16 110 7.0 9.5 8.2 1.7 120 chr3R 29471982 intron Ptp99A + chr3R 29472042 intron Ptp99A + chr3R 29472102 intron Ptp99A + chr3R_16_29470001 chr3R_29470001 RAL-340_100b 3656 chr3R 21907534 21907534 chr3R 29484260 29484270 4 7576731 64.0 103.0 83.5 0.0 7576736 chr3R 21907534 intergenic CG6678 + chr3R 25695902 intergenic not near genes chr3R 29484270 exon Ptp99A + chr3R_4_25695001 chr3R_25695001 RAL-340_100b 3657 chr3R 29505868 29505924 chr3R 29505970 29506026 27 101 5.0 5.5 5.2 4.4 158 chr3R 29505868 intergenic not near genes chr3R 29505947 intergenic not near genes chr3R 29506026 intergenic not near genes chr3R_27_29505001 chr3R_29505001 RAL-340_100b 3658 chr3R 29549322 29549342 chr3R 29549429 29549449 6 107 4.0 6.5 5.2 1.0 127 chr3R 29549322 intergenic not near genes chr3R 29549386 intergenic not near genes chr3R 29549449 intergenic not near genes chr3R_6_29545001 chr3R_29545001 RAL-340_100b 3659 chr3R 29563981 29563996 chr3R 29564046 29564097 7 96 0.0 6.5 3.2 1.7 116 chr3R 29563981 intron Dr + chr3R 29564039 intron Dr + chr3R 29564097 intron Dr + chr3R_7_29560001 chr3R_29560001 RAL-340_100b 3660 chr3R 29570802 29570852 chr3R 29570920 29570970 23 113 13.5 9.0 11.2 1.9 168 chr3R 29570802 intergenic not near genes chr3R 29570886 intergenic not near genes chr3R 29570970 intergenic not near genes chr3R_23_29570001 chr3R_29570001 RAL-340_100b 3661 chr3R 29581528 29581568 chr3R 29581634 29581674 9 105 5.0 9.5 7.2 1.1 146 chr3R 29581528 intergenic not near genes chr3R 29581601 intergenic not near genes chr3R 29581674 intergenic not near genes chr3R_9_29580001 chr3R_29580001 RAL-340_100b 3662 chr3R 29606934 29606968 chr3R 29607014 29607046 18 95 7.0 5.0 6.0 2.6 112 chr3R 29606934 intron alph + chr3R 29606990 intron alph + chr3R 29607046 intron alph + chr3R_18_29605001 chr3R_29605001 RAL-340_100b 3663 chr3R 29655625 29655685 chr3R 29655729 29655789 10 102 6.5 6.5 6.5 1.3 164 chr3R 29655625 intron Dop1R2 - chr3R 29655707 intron Dop1R2 - chr3R 29655789 intron Dop1R2 - chr3R_10_29655001 chr3R_29655001 RAL-340_100b 3664 chr3R 29718120 29718170 chr3R 29718221 29718271 14 101 11.0 10.0 10.5 1.2 151 chr3R 29718120 intergenic not near genes chr3R 29718196 intergenic CG15506 + chr3R 29718271 intergenic CG15506 + chr3R_14_29715001 chr3R_29715001 RAL-340_100b 3665 chr3R 29738240 29738256 chr3R 29739732 29739748 hobo 9 1492 14.5 7.5 11.0 0.8 1508 chr3R 29738240 intergenic CG1969 +,CG7598 + chr3R 29738994 intron CG1969 + chr3R 29739748 5` UTR CG1969 + chr3R_9_29735001 chr3R_29735001 RAL-340_100b 3666 chr3R 29738257 29738294 chr3R 29739729 29739786 hobo 33 1485 7.0 7.5 7.2 4.0 1529 chr3R 29738257 intergenic CG1969 +,CG7598 + chr3R 29739022 intron CG1969 + chr3R 29739786 5` UTR CG1969 + chr3R_33_29735001 chr3R_29735001 RAL-340_100b 3667 chr3R 29760346 29760381 chr3R 29761567 29761607 pogo 13 1226 14.5 7.5 11.0 1.1 1261 chr3R 29760346 intergenic not near genes chr3R 29760976 intergenic not near genes chr3R 29761607 intergenic not near genes chr3R_13_29760001 chr3R_29760001 RAL-340_100b 3668 chr3R 29773872 29773896 chr3R 29773988 29774011 14 115 11.0 0.5 5.8 2.1 139 chr3R 29773872 intron kay + chr3R 29773942 intron kay + chr3R 29774011 intron kay + chr3R_14_29770001 chr3R_29770001 RAL-340_100b 3669 chr3R 29880989 29881014 chr3R 29881100 29881125 10 110 7.0 7.0 7.0 1.2 136 chr3R 29880989 intron CG31038 + chr3R 29881057 intron CG31038 + chr3R 29881125 intron CG31038 + chr3R_10_29880001 chr3R_29880001 RAL-340_100b 3670 chr3R 29881025 29881035 chr3R 29881098 29881146 9 107 4.0 7.0 5.5 1.4 121 chr3R 29881025 intron CG31038 + chr3R 29881086 intron CG31038 + chr3R 29881146 intron CG31038 + chr3R_9_29880001 chr3R_29880001 RAL-340_100b 3671 chr3R 29881998 29882028 chr3R 29891180 29891210 roo 8 9182 13.0 7.0 10.0 0.7 9212 chr3R 29881998 intron CG31038 + chr3R 29886604 intron CG31038 + chr3R 29891210 intron CG31038 + chr3R_8_29885001 chr3R_29885001 RAL-340_100b 3672 chr3R 29882031 29882049 chr3R 29891179 29891231 roo 7 9174 8.0 7.0 7.5 0.8 9200 chr3R 29882031 intron CG31038 + chr3R 29886631 intron CG31038 + chr3R 29891231 intron CG31038 + chr3R_7_29885001 chr3R_29885001 RAL-340_100b 3673 chr3R 29907401 29907412 chr3R 29907528 29907534 4 126 10.5 1.0 5.8 0.6 133 chr3R 29907401 intergenic not near genes chr3R 29907468 intergenic not near genes chr3R 29907534 intergenic not near genes chr3R_4_29905001 chr3R_29905001 RAL-340_100b 3674 chr3R 29907414 29907443 chr3R 29907526 29907571 14 125 5.0 1.0 3.0 3.5 157 chr3R 29907414 intergenic not near genes chr3R 29907492 intergenic not near genes chr3R 29907571 intergenic not near genes chr3R_14_29905001 chr3R_29905001 RAL-340_100b 3675 chr3R 29963474 29963476 chr3R 29963592 29963603 4 119 6.5 9.0 7.8 0.5 129 chr3R 29963474 intron TkR99D - chr3R 29963538 intron TkR99D - chr3R 29963603 intron TkR99D - chr3R_4_29960001 chr3R_29960001 RAL-340_100b 3676 chr3R 29963478 29963489 chr3R 29963590 29963616 10 123 5.5 9.0 7.2 1.2 138 chr3R 29963478 intron TkR99D - chr3R 29963547 intron TkR99D - chr3R 29963616 intron TkR99D - chr3R_10_29960001 chr3R_29960001 RAL-340_100b 3677 chr3R 29963493 29963508 chr3R 29963590 29963630 12 115 2.0 9.0 5.5 1.8 137 chr3R 29963493 intron TkR99D - chr3R 29963562 intron TkR99D - chr3R 29963630 intron TkR99D - chr3R_12_29960001 chr3R_29960001 RAL-340_100b 3678 chr3R 29966062 29966074 chr3R 29966142 29966176 7 96 6.0 18.5 12.2 0.5 114 chr3R 29966062 intron TkR99D - chr3R 29966119 intron TkR99D - chr3R 29966176 intron TkR99D - chr3R_7_29965001 chr3R_29965001 RAL-340_100b 3679 chr3R 29968734 29968792 chr3R 29968943 29968992 29 200 9.0 9.0 9.0 2.9 258 chr3R 29968734 intron TkR99D - chr3R 29968863 intron TkR99D - chr3R 29968992 5` UTR TkR99D - chr3R_29_29965001 chr3R_29965001 RAL-340_100b 3680 chr3R 29979956 29980013 chr3R 29980063 29980085 23 98 10.5 4.0 7.2 2.8 129 chr3R 29979956 intergenic not near genes chr3R 29980020 intergenic not near genes chr3R 29980085 intergenic not near genes chr3R_23_29980001 chr3R_29980001 RAL-340_100b 3681 chr3R 30032137 30032155 chr3R 30032241 30032259 27 102 48.5 24.0 36.2 0.7 122 chr3R 30032137 intron Axn + chr3R 30032198 intron Axn + chr3R 30032259 intron Axn + chr3R_27_30030001 chr3R_30030001 RAL-340_100b 3682 chr3R 30032156 30032181 chr3R 30032239 30032257 10 84 23.5 21.0 22.2 0.4 101 chr3R 30032156 intron Axn + chr3R 30032206 intron Axn + chr3R 30032257 intron Axn + chr3R_10_30030001 chr3R_30030001 RAL-340_100b 3683 chr3R 30051286 30051300 chr3R 30051389 30051404 7 104 10.0 10.0 10.0 0.6 118 chr3R 30051286 intron,intron CG15528 -,CR44046 + chr3R 30051345 intron,intron CG15528 -,CR44046 + chr3R 30051404 intron,intron CG15528 -,CR44046 + chr3R_7_30050001 chr3R_30050001 RAL-340_100b 3684 chr3R 30084842 30084851 chr3R 30086323 30086343 hobo 5 1488 7.5 23.0 15.2 0.3 1501 chr3R 30084842 intron sima + chr3R 30085592 intron sima + chr3R 30086343 intron sima + chr3R_5_30085001 chr3R_30085001 RAL-340_100b 3685 chr3R 30084854 30084886 chr3R 30086319 30086351 hobo 10 1482 5.0 19.5 12.2 0.8 1497 chr3R 30084854 intron sima + chr3R 30085602 intron sima + chr3R 30086351 intron sima + chr3R_10_30085001 chr3R_30085001 RAL-340_100b 3686 chr3R 30182688 30182779 chr3R 30182887 30182905 19 159 11.5 8.5 10.0 1.7 217 chr3R 30182688 intergenic not near genes chr3R 30182796 intergenic not near genes chr3R 30182905 intergenic not near genes chr3R_19_30180001 chr3R_30180001 RAL-340_100b 3687 chr3R 30210664 30210674 chr3R 30210733 30210764 5 95 0.5 9.5 5.0 0.8 100 chr3R 30210664 intergenic CecA1 +,Anp + chr3R 30210714 intergenic CecA1 +,Anp + chr3R 30210764 intergenic CecA1 +,Anp + chr3R_5_30210001 chr3R_30210001 RAL-340_100b 3688 chr3R 30238738 30238795 chr3R 30239936 30239939 1360 6 1185 7.5 0.5 4.0 1.2 1201 chr3R 30238738 intergenic not near genes chr3R 30239338 intergenic not near genes chr3R 30239939 intergenic not near genes chr3R_6_30235001 chr3R_30235001 RAL-340_100b 3689 chr3R 30264460 30264505 chr3R 30264669 30264707 11 202 11.0 8.5 9.8 1.0 247 chr3R 30264460 intergenic not near genes chr3R 30264584 intergenic not near genes chr3R 30264707 intergenic not near genes chr3R_11_30260001 chr3R_30260001 RAL-340_100b 3690 chr3R 7773344 7773344 chr3R 30278264 30278264 16 22504920 28.5 41.5 35.0 0.4 22504920 chr3R 7773344 intergenic not near genes chr3R 19025804 exon CG14285 + chr3R 30278264 5` UTR hdc + chr3R_16_19025001 chr3R_19025001 RAL-340_100b 3691 chr3R 30287748 30287761 chr3R 30287855 30287869 6 106 25.0 3.0 14.0 0.4 121 chr3R 30287748 intron hdc + chr3R 30287808 intron hdc + chr3R 30287869 intron hdc + chr3R_6_30285001 chr3R_30285001 RAL-340_100b 3692 chr3R 30317330 30317352 chr3R 30324944 30324969 roo 8 7616 2.5 9.5 6.0 1.1 7639 chr3R 30317330 intron hdc + chr3R 30321150 intron hdc + chr3R 30324969 intron hdc + chr3R_8_30320001 chr3R_30320001 RAL-340_100b 3693 chr3R 30375519 30375561 chr3R 30383169 30383211 412 6 7646 6.5 5.5 6.0 0.9 7692 chr3R 30375519 intergenic not near genes chr3R 30379365 intergenic not near genes chr3R 30383211 intergenic not near genes chr3R_6_30375001 chr3R_30375001 RAL-340_100b 3694 chr3R 30396194 30396216 chr3R 30404485 30404507 roo 8 8290 21.5 14.0 17.8 0.4 8313 chr3R 30396194 intergenic not near genes chr3R 30400350 intergenic not near genes chr3R 30404507 5` UTR CR45570 + chr3R_8_30400001 chr3R_30400001 RAL-340_100b 3695 chr3R 30396219 30396243 chr3R 30404484 30404534 roo 15 8287 13.0 12.5 12.8 1.1 8315 chr3R 30396219 intergenic not near genes chr3R 30400376 intergenic not near genes chr3R 30404534 5` UTR CR45570 + chr3R_15_30400001 chr3R_30400001 RAL-340_100b 3696 chr3R 30566722 30566771 chr3R 30566841 30566889 27 115 7.0 10.5 8.8 2.8 167 chr3R 30566722 intron tmod + chr3R 30566806 intron tmod + chr3R 30566889 intron tmod + chr3R_27_30565001 chr3R_30565001 RAL-340_100b 3697 chr3R 30627586 30627637 chr3R 30627691 30627730 26 97 8.5 12.0 10.2 2.3 144 chr3R 30627586 3` UTR CG2267 - chr3R 30627658 exon CG2267 - chr3R 30627730 exon CG2267 - chr3R_26_30625001 chr3R_30625001 RAL-340_100b 3698 chr3R 30649826 30649875 chr3R 30649931 30649975 29 102 6.0 12.5 9.2 2.8 149 chr3R 30649826 3` UTR CG34432 + chr3R 30649900 intergenic CG34432 +,CG34433 + chr3R 30649975 exon CG34433 + chr3R_29_30645001 chr3R_30645001 RAL-340_100b 3699 chr3R 30679493 30679505 chr3R 30686987 30686999 blood 8 7493 29.5 7.0 18.2 0.4 7506 chr3R 30679493 intergenic not near genes chr3R 30683246 intergenic not near genes chr3R 30686999 intergenic not near genes chr3R_8_30680001 chr3R_30680001 RAL-340_100b 3700 chr3R 30679509 30679550 chr3R 30687003 30687044 blood 21 7492 10.0 10.5 10.2 1.9 7535 chr3R 30679509 intergenic not near genes chr3R 30683276 intergenic not near genes chr3R 30687044 intergenic not near genes chr3R_21_30680001 chr3R_30680001 RAL-340_100b 3701 chr3R 30690140 30690151 chr3R 30690249 30690260 5 109 22.0 14.0 18.0 0.3 120 chr3R 30690140 intergenic not near genes chr3R 30690200 intergenic Spn100A + chr3R 30690260 intergenic Spn100A + chr3R_5_30690001 chr3R_30690001 RAL-340_100b 3702 chr3R 30690153 30690168 chr3R 30690246 30690277 10 106 16.0 12.5 14.2 0.7 124 chr3R 30690153 intergenic Spn100A + chr3R 30690215 intergenic Spn100A + chr3R 30690277 intergenic Spn100A + chr3R_10_30690001 chr3R_30690001 RAL-340_100b 3703 chr3R 30690174 30690192 chr3R 30690248 30690283 6 97 8.0 13.0 10.5 0.5 109 chr3R 30690174 intergenic Spn100A + chr3R 30690228 intergenic Spn100A + chr3R 30690283 intergenic Spn100A + chr3R_6_30690001 chr3R_30690001 RAL-340_100b 3704 chr3R 30700840 30700877 chr3R 30700988 30701019 9 144 6.0 0.0 3.0 2.2 179 chr3R 30700840 intergenic not near genes chr3R 30700930 intergenic not near genes chr3R 30701019 intergenic not near genes chr3R_9_30700001 chr3R_30700001 RAL-340_100b 3705 chr3R 30767136 30767164 chr3R 30767792 30767797 4 645 16.5 10.0 13.2 0.3 661 chr3R 30767136 intron zfh1 + chr3R 30767466 intron zfh1 + chr3R 30767797 intron zfh1 + chr3R_4_30765001 chr3R_30765001 RAL-340_100b 3706 chr3R 21907534 21907536 chr3R 30788676 30788709 9 8881170 64.0 44.5 54.2 0.2 8881175 chr3R 21907534 intergenic CG6678 + chr3R 26348122 intron CG33970 + chr3R 30788709 3` UTR zfh1 + chr3R_9_26345001 chr3R_26345001 RAL-340_100b 3707 chr3R 30948053 30948075 chr3R 30948269 30948271 11 212 25.0 4.5 14.8 0.7 218 chr3R 30948053 intergenic not near genes chr3R 30948162 intergenic not near genes chr3R 30948271 intergenic not near genes chr3R_11_30945001 chr3R_30945001 RAL-340_100b 3708 chr3R 30948076 30948108 chr3R 30948267 30948324 25 205 11.5 4.0 7.8 2.8 248 chr3R 30948076 intergenic not near genes chr3R 30948200 intergenic not near genes chr3R 30948324 intergenic not near genes chr3R_25_30945001 chr3R_30945001 RAL-340_100b 3709 chr3R 30956832 30956890 chr3R 30956964 30957022 30 128 6.5 6.5 6.5 4.0 190 chr3R 30956832 intergenic not near genes chr3R 30956927 intergenic not near genes chr3R 30957022 intergenic not near genes chr3R_30_30955001 chr3R_30955001 RAL-340_100b 3710 chr3R 30982572 30982578 chr3R 30982689 30982689 5 116 17.5 5.0 11.2 0.4 117 chr3R 30982572 intron 5-HT7 - chr3R 30982630 intron 5-HT7 - chr3R 30982689 intron 5-HT7 - chr3R_5_30980001 chr3R_30980001 RAL-340_100b 3711 chr3R 30982579 30982618 chr3R 30982686 30982731 10 112 8.0 4.0 6.0 1.4 152 chr3R 30982579 intron 5-HT7 - chr3R 30982655 intron 5-HT7 - chr3R 30982731 intron 5-HT7 - chr3R_10_30980001 chr3R_30980001 RAL-340_100b 3712 chr3R 31042085 31042143 chr3R 31042197 31042255 25 110 6.5 10.5 8.5 2.6 170 chr3R 31042085 intron CanA1 + chr3R 31042170 intron CanA1 + chr3R 31042255 intron CanA1 + chr3R_25_31040001 chr3R_31040001 RAL-340_100b 3713 chr3R 31055499 31055513 chr3R 31055622 31055635 5 125 26.0 29.0 27.5 0.2 136 chr3R 31055499 3` UTR dco - chr3R 31055567 3` UTR dco - chr3R 31055635 3` UTR dco - chr3R_5_31055001 chr3R_31055001 RAL-340_100b 3714 chr3R 31062622 31062680 chr3R 31062728 31062747 19 101 10.0 6.0 8.0 2.1 125 chr3R 31062622 intergenic not near genes chr3R 31062684 intergenic not near genes chr3R 31062747 intergenic not near genes chr3R_19_31060001 chr3R_31060001 RAL-340_100b 3715 chr3R 31074205 31074261 chr3R 31081828 31081890 springer 12 7625 8.5 0.0 4.2 2.3 7685 chr3R 31074205 intron Sox100B + chr3R 31078048 intron Sox100B + chr3R 31081890 intron Sox100B + chr3R_12_31075001 chr3R_31075001 RAL-340_100b 3716 chr3R 31186521 31186576 chr3R 31186618 31186677 23 96 25.0 5.5 15.2 1.4 156 chr3R 31186521 intron mesh - chr3R 31186599 intron mesh - chr3R 31186677 intron mesh - chr3R_23_31185001 chr3R_31185001 RAL-340_100b 3717 chr3R 28544207 28544212 chr3R 31227363 31227368 roo 4 2683156 28.0 56.5 42.2 0.1 2683161 chr3R 28544207 exon CG12413 - chr3R 29885788 intron CG31038 + chr3R 31227368 intron CG12054 + chr3R_4_29885001 chr3R_29885001 RAL-340_100b 3718 chr3R 31265260 31265302 chr3R 31265425 31265428 12 155 7.5 5.5 6.5 1.6 168 chr3R 31265260 intergenic ppk24 + chr3R 31265344 intergenic ppk24 + chr3R 31265428 intergenic ppk24 + chr3R_12_31265001 chr3R_31265001 RAL-340_100b 3719 chr3R 31279349 31279360 chr3R 31285565 31285576 diver 5 6213 21.5 5.0 13.2 0.4 6227 chr3R 31279349 intergenic not near genes chr3R 31282462 intergenic not near genes chr3R 31285576 intergenic not near genes chr3R_5_31280001 chr3R_31280001 RAL-340_100b 3720 chr3R 31279367 31279398 chr3R 31285563 31285614 diver 23 6208 11.0 5.0 8.0 2.6 6247 chr3R 31279367 intergenic not near genes chr3R 31282490 intergenic not near genes chr3R 31285614 intergenic not near genes chr3R_23_31280001 chr3R_31280001 RAL-340_100b 3721 chr3R 31323596 31323648 chr3R 31323702 31323755 15 97 4.0 6.5 5.2 2.4 159 chr3R 31323596 intron CG34347 + chr3R 31323676 intron CG34347 + chr3R 31323755 intron CG34347 + chr3R_15_31320001 chr3R_31320001 RAL-340_100b 3722 chr3R 31413083 31413118 chr3R 31418293 31418311 copia 11 5212 5.5 5.0 5.2 1.8 5228 chr3R 31413083 intron Gprk2 + chr3R 31415697 intron Gprk2 + chr3R 31418311 intron Gprk2 + chr3R_11_31415001 chr3R_31415001 RAL-340_100b 3723 chr3R 31426863 31426905 chr3R 31426975 31427022 14 116 5.5 6.0 5.8 2.1 159 chr3R 31426863 intron Gprk2 + chr3R 31426942 intron Gprk2 + chr3R 31427022 intron Gprk2 + chr3R_14_31425001 chr3R_31425001 RAL-340_100b 3724 chr3R 31430700 31430746 chr3R 31430807 31430859 26 106 3.0 4.0 3.5 5.8 159 chr3R 31430700 intron Gprk2 + chr3R 31430780 intron Gprk2 + chr3R 31430859 intron Gprk2 + chr3R_26_31430001 chr3R_31430001 RAL-340_100b 3725 chr3R 31435337 31435374 chr3R 31435514 31435541 18 172 11.5 6.5 9.0 1.8 204 chr3R 31435337 intron Gprk2 + chr3R 31435439 intron Gprk2 + chr3R 31435541 intron Gprk2 + chr3R_18_31435001 chr3R_31435001 RAL-340_100b 3726 chr3R 31435375 31435386 chr3R 31435513 31435563 9 173 8.5 6.0 7.2 1.1 188 chr3R 31435375 intron Gprk2 + chr3R 31435469 intron Gprk2 + chr3R 31435563 intron Gprk2 + chr3R_9_31435001 chr3R_31435001 RAL-340_100b 3727 chr3R 31530802 31530830 chr3R 31531142 31531160 6 343 11.0 5.0 8.0 0.7 358 chr3R 31530802 intergenic not near genes chr3R 31530981 intergenic not near genes chr3R 31531160 intergenic not near genes chr3R_6_31530001 chr3R_31530001 RAL-340_100b 3728 chr3R 31530831 31530846 chr3R 31531143 31531198 9 337 7.5 5.5 6.5 1.2 367 chr3R 31530831 intergenic not near genes chr3R 31531014 intergenic not near genes chr3R 31531198 intergenic not near genes chr3R_9_31530001 chr3R_31530001 RAL-340_100b 3729 chr3R 31600131 31600133 chr3R 31600216 31600240 7 101 16.0 8.5 12.2 0.5 109 chr3R 31600131 intron CycG - chr3R 31600186 intron CycG - chr3R 31600240 intron CycG - chr3R_7_31600001 chr3R_31600001 RAL-340_100b 3730 chr3R 31600135 31600158 chr3R 31600214 31600265 23 95 5.0 8.5 6.8 2.9 130 chr3R 31600135 intron CycG - chr3R 31600200 intron CycG - chr3R 31600265 intron CycG - chr3R_23_31600001 chr3R_31600001 RAL-340_100b 3731 chr3R 31630043 31630066 chr3R 31630168 31630181 9 126 9.0 5.5 7.2 1.1 138 chr3R 31630043 intron kek6 + chr3R 31630112 intron kek6 + chr3R 31630181 intron kek6 + chr3R_9_31630001 chr3R_31630001 RAL-340_100b 3732 chr3R 31630072 31630083 chr3R 31630167 31630206 4 120 5.0 5.5 5.2 0.6 134 chr3R 31630072 intron kek6 + chr3R 31630139 intron kek6 + chr3R 31630206 intron kek6 + chr3R_4_31630001 chr3R_31630001 RAL-340_100b 3733 chr3R 31681940 31681950 chr3R 31682118 31682136 9 184 36.0 20.5 28.2 0.3 196 chr3R 31681940 intergenic not near genes chr3R 31682038 intergenic not near genes chr3R 31682136 intergenic not near genes chr3R_9_31680001 chr3R_31680001 RAL-340_100b 3734 chr3R 31691510 31691519 chr3R 31696296 31696310 Doc 6 4789 15.0 8.0 11.5 0.5 4800 chr3R 31691510 intergenic not near genes chr3R 31693910 intergenic not near genes chr3R 31696310 intergenic not near genes chr3R_6_31690001 chr3R_31690001 RAL-340_100b 3735 chr3R 31691525 31691541 chr3R 31696305 31696331 Doc 8 4786 12.0 9.5 10.8 0.7 4806 chr3R 31691525 intergenic not near genes chr3R 31693928 intergenic not near genes chr3R 31696331 intergenic not near genes chr3R_8_31690001 chr3R_31690001 RAL-340_100b 3736 chr3R 31691543 31691562 chr3R 31696296 31696353 Doc 16 4781 7.5 8.0 7.8 1.8 4810 chr3R 31691543 intergenic not near genes chr3R 31693948 intergenic not near genes chr3R 31696353 intergenic not near genes chr3R_16_31690001 chr3R_31690001 RAL-340_100b 3737 chr3R 31774850 31774869 chr3R 31775015 31775039 10 169 24.0 13.0 18.5 0.5 189 chr3R 31774850 3` UTR sip3 + chr3R 31774944 3` UTR sip3 + chr3R 31775039 3` UTR sip3 + chr3R_10_31770001 chr3R_31770001 RAL-340_100b 3738 chr3R 31774875 31774896 chr3R 31775029 31775066 13 167 15.5 21.0 18.2 0.7 191 chr3R 31774875 3` UTR sip3 + chr3R 31774970 3` UTR sip3 + chr3R 31775066 3` UTR,3` UTR sip3 +,CG2126 - chr3R_13_31770001 chr3R_31770001 RAL-340_100b 3739 chr3R 31828840 31828878 chr3R 31828949 31828975 17 111 8.0 12.0 10.0 1.5 135 chr3R 31828840 intron RhoGAP100F + chr3R 31828908 intron RhoGAP100F + chr3R 31828975 intron RhoGAP100F + chr3R_17_31825001 chr3R_31825001 RAL-340_100b 3740 chr3R 31829280 31829333 chr3R 31829872 31829912 52 594 7.5 11.0 9.2 5.1 632 chr3R 31829280 intron RhoGAP100F + chr3R 31829596 intron RhoGAP100F + chr3R 31829912 intron RhoGAP100F + chr3R_52_31825001 chr3R_31825001 RAL-340_100b 3741 chr3R 31858125 31858133 chr3R 31858228 31858236 4 103 9.0 7.0 8.0 0.4 111 chr3R 31858125 intron heph - chr3R 31858180 intron heph - chr3R 31858236 intron heph - chr3R_4_31855001 chr3R_31855001 RAL-340_100b 3742 chr3R 31858147 31858169 chr3R 31858222 31858232 9 95 3.5 5.5 4.5 1.6 85 chr3R 31858147 intron heph - chr3R 31858190 intron heph - chr3R 31858232 intron heph - chr3R_9_31855001 chr3R_31855001 RAL-340_100b 3743 chr3R 31858750 31858769 chr3R 31858859 31858880 5 108 15.5 17.0 16.2 0.3 130 chr3R 31858750 intron heph - chr3R 31858815 intron heph - chr3R 31858880 intron heph - chr3R_5_31855001 chr3R_31855001 RAL-340_100b 3744 chr3R 31864254 31864280 chr3R 31864361 31864384 9 107 7.0 13.5 10.2 0.8 130 chr3R 31864254 intron heph - chr3R 31864319 intron heph - chr3R 31864384 intron heph - chr3R_9_31860001 chr3R_31860001 RAL-340_100b 3745 chr3R 31885653 31885698 chr3R 31885755 31885795 18 98 10.0 8.5 9.2 1.8 142 chr3R 31885653 intron heph - chr3R 31885724 intron heph - chr3R 31885795 intron heph - chr3R_18_31885001 chr3R_31885001 RAL-340_100b 3746 chr3R 31913031 31913088 chr3R 31913747 31913749 27 707 12.5 12.0 12.2 2.0 718 chr3R 31913031 intron heph - chr3R 31913390 intron heph - chr3R 31913749 intron heph - chr3R_27_31910001 chr3R_31910001 RAL-340_100b 3747 chr3R 31924391 31924603 chr3R 31924500 31924709 14 104 0.0 3.0 1.5 5.6 318 chr3R 31924391 intron heph - chr3R 31924550 intron heph - chr3R 31924709 intron heph - chr3R_14_31920001 chr3R_31920001 RAL-340_100b 3748 chr3R 31930857 31930863 chr3R 31930982 31930988 4 125 30.0 12.0 21.0 0.2 131 chr3R 31930857 intron heph - chr3R 31930922 intron heph - chr3R 31930988 intron heph - chr3R_4_31930001 chr3R_31930001 RAL-340_100b 3749 chr3R 31930888 31930899 chr3R 31931007 31931012 13 121 12.5 24.5 18.5 0.7 124 chr3R 31930888 intron heph - chr3R 31930950 intron heph - chr3R 31931012 intron heph - chr3R_13_31930001 chr3R_31930001 RAL-340_100b 3750 chr3R 31930905 31931203 chr3R 31931028 31931311 18 108 18.0 29.0 23.5 0.7 406 chr3R 31930905 intron heph - chr3R 31931108 intron heph - chr3R 31931311 intron heph - chr3R_18_31930001 chr3R_31930001 RAL-340_100b 3751 chr3R 31931205 31931213 chr3R 31931312 31931321 6 108 15.5 34.0 24.8 0.2 116 chr3R 31931205 intron heph - chr3R 31931263 intron heph - chr3R 31931321 intron heph - chr3R_6_31930001 chr3R_31930001 RAL-340_100b 3752 chr3R 31997967 31998020 chr3R 32005462 32005515 blood 27 7489 10.0 8.0 9.0 2.7 7548 chr3R 31997967 intron heph - chr3R 32001741 intron heph - chr3R 32005515 intron heph - chr3R_27_32000001 chr3R_32000001 RAL-340_100b 3753 chr4 73632 73676 chr4 73736 73778 4 101 6.0 9.5 7.8 0.5 146 chr4 73632 intron pan + chr4 73705 intron pan + chr4 73778 intron pan + chr4_4_70001 chr4_70001 RAL-340_100b 3754 chr4 76489 76516 chr4 81956 81984 I-element 4 5466 7.0 7.5 7.2 0.5 5495 chr4 76489 intron pan + chr4 79236 intron pan + chr4 81984 intron pan + chr4_4_75001 chr4_75001 RAL-340_100b 3755 chr4 319978 320013 chr4 328179 328214 Stalker2 7 8199 3.5 6.5 5.0 1.2 8236 chr4 319978 3` UTR CG32850 + chr4 324096 intron CG32850 + chr4 328214 3` UTR,3` UTR CG32850 +,PMCA - chr4_7_320001 chr4_320001 RAL-340_100b 3756 chr4 447395 447446 chr4 447508 447559 24 111 3.5 7.0 5.2 3.9 164 chr4 447395 intron CaMKI + chr4 447477 intron CaMKI + chr4 447559 intron CaMKI + chr4_24_445001 chr4_445001 RAL-340_100b 3757 chr4 495178 495203 chr4 495279 495305 13 99 2.0 5.0 3.5 2.9 127 chr4 495178 intergenic not near genes chr4 495242 intergenic not near genes chr4 495305 intergenic not near genes chr4_13_495001 chr4_495001 RAL-340_100b 3758 chr4 671582 671621 chr4 680190 680229 Tirant 13 8606 10.0 5.0 7.5 1.5 8647 chr4 671582 intron CG11360 + chr4 675906 intron CG11360 + chr4 680229 intron CG11360 + chr4_13_675001 chr4_675001 RAL-340_100b 3759 chr4 743561 743602 chr4 743668 743706 11 109 6.5 8.5 7.5 1.3 145 chr4 743561 intron bt + chr4 743634 intron bt + chr4 743706 intron bt + chr4_11_740001 chr4_740001 RAL-340_100b 3760 chr4 904046 904071 chr4 904157 904182 8 111 13.5 11.5 12.5 0.6 136 chr4 904046 intron unc-13 - chr4 904114 intron unc-13 - chr4 904182 intron unc-13 - chr4_8_900001 chr4_900001 RAL-340_100b 3761 chr4 904072 904095 chr4 904152 904206 23 104 7.0 9.5 8.2 2.5 134 chr4 904072 intron unc-13 - chr4 904139 intron unc-13 - chr4 904206 intron unc-13 - chr4_23_900001 chr4_900001 RAL-340_100b 3762 chr4 959600 959653 chr4 959804 959857 13 202 3.5 3.5 3.5 2.9 257 chr4 959600 intergenic CR44030 +,CR45201 - chr4 959728 5` UTR CR44030 + chr4 959857 5` UTR CR44030 + chr4_13_955001 chr4_955001 RAL-340_100b 3763 chr4 972483 972520 chr4 972579 972627 17 105 6.5 8.0 7.2 2.1 144 chr4 972483 intron fuss - chr4 972555 intron fuss - chr4 972627 intron fuss - chr4_17_970001 chr4_970001 RAL-340_100b 3764 chrX 295834 295879 chrX 303479 303524 412 10 7644 5.0 8.5 6.8 1.3 7690 chrX 295834 intron CG3777 + chrX 299679 intron CG3777 + chrX 303524 intron CG3777 + chrX_10_295001 chrX_295001 RAL-340_100b 3765 chrX 318461 318497 chrX 323564 323608 flea 8 5106 7.5 8.0 7.8 0.9 5147 chrX 318461 intron,intron CG3777 +,CG32816 - chrX 321034 intron,intron CG3777 +,CG32816 - chrX 323608 intron,intron CG3777 +,CG32816 - chrX_8_320001 chrX_320001 RAL-340_100b 3766 chrX 428399 428443 chrX 434609 434646 3S18 13 6207 6.0 7.5 6.8 1.7 6247 chrX 428399 intron CG32816 - chrX 431522 intron CG32816 - chrX 434646 intron CG32816 - chrX_13_430001 chrX_430001 RAL-340_100b 3767 chrX 449864 449922 chrX 449986 450044 25 120 3.5 8.0 5.8 3.7 180 chrX 449864 intron CG32816 - chrX 449954 intron CG32816 - chrX 450044 intron CG32816 - chrX_25_445001 chrX_445001 RAL-340_100b 3768 chrX 450347 450395 chrX 450450 450498 10 102 5.0 5.0 5.0 1.7 151 chrX 450347 intron CG32816 - chrX 450422 intron CG32816 - chrX 450498 intron CG32816 - chrX_10_450001 chrX_450001 RAL-340_100b 3769 chrX 551433 551453 chrX 558995 559040 412 4 7570 3.5 6.0 4.8 0.7 7607 chrX 551433 intron Appl + chrX 555236 intron Appl + chrX 559040 intron Appl + chrX_4_555001 chrX_555001 RAL-340_100b 3770 chrX 569325 569375 chrX 569457 569499 19 133 6.0 6.0 6.0 2.7 174 chrX 569325 intron Appl + chrX 569412 intron Appl + chrX 569499 intron Appl + chrX_19_565001 chrX_565001 RAL-340_100b 3771 chrX 611114 611144 chrX 611229 611259 12 114 17.0 11.0 14.0 0.8 145 chrX 611114 intron CG13366 - chrX 611186 intron CG13366 - chrX 611259 intron CG13366 - chrX_12_610001 chrX_610001 RAL-340_100b 3772 chrX 611147 611167 chrX 611226 611250 10 103 10.0 9.5 9.8 0.9 103 chrX 611147 intron CG13366 - chrX 611198 intron CG13366 - chrX 611250 intron CG13366 - chrX_10_610001 chrX_610001 RAL-340_100b 3773 chrX 680814 680870 chrX 680921 680978 23 99 12.5 9.5 11.0 1.9 164 chrX 680814 intergenic not near genes chrX 680896 intergenic not near genes chrX 680978 intergenic not near genes chrX_23_680001 chrX_680001 RAL-340_100b 3774 chrX 701735 701735 chrX 12946233 12946235 18 12244499 29.5 31.5 30.5 0.6 12244500 chrX 701735 intron sdk + chrX 6823985 exon Atx-1 + chrX 12946235 3` UTR fne + chrX_18_6820001 chrX_6820001 RAL-340_100b 3775 chrX 706771 706827 chrX 707168 707216 14 388 0.5 11.0 5.8 2.1 445 chrX 706771 intron sdk + chrX 706994 intron sdk + chrX 707216 intron sdk + chrX_14_705001 chrX_705001 RAL-340_100b 3776 chrX 718305 718360 chrX 718410 718464 29 99 5.0 7.5 6.2 4.0 159 chrX 718305 intron sdk + chrX 718384 intron sdk + chrX 718464 intron sdk + chrX_29_715001 chrX_715001 RAL-340_100b 3777 chrX 778100 778150 chrX 778215 778265 15 113 10.0 0.5 5.2 2.4 165 chrX 778100 intron fz3 + chrX 778182 intron fz3 + chrX 778265 intron fz3 + chrX_15_775001 chrX_775001 RAL-340_100b 3778 chrX 806775 806817 chrX 806888 806938 20 115 5.0 4.0 4.5 3.6 163 chrX 806775 intron Sec22 + chrX 806856 intron Sec22 + chrX 806938 intron Sec22 + chrX_20_805001 chrX_805001 RAL-340_100b 3779 chrX 812264 812299 chrX 817898 817953 297 11 5641 10.5 7.0 8.8 1.1 5689 chrX 812264 intron CG43867 - chrX 815108 intron CG43867 - chrX 817953 intron CG43867 - chrX_11_815001 chrX_815001 RAL-340_100b 3780 chrX 827585 827607 chrX 835402 835414 roo 6 7815 18.0 2.0 10.0 0.5 7829 chrX 827585 intron CG43867 - chrX 831500 intron CG43867 - chrX 835414 intron CG43867 - chrX_6_830001 chrX_830001 RAL-340_100b 3781 chrX 827611 827632 chrX 835397 835469 roo 6 7828 12.0 2.0 7.0 0.8 7858 chrX 827611 intron CG43867 - chrX 831540 intron CG43867 - chrX 835469 intron CG43867 - chrX_6_830001 chrX_830001 RAL-340_100b 3782 chrX 855280 855294 chrX 12649914 12649914 6 11794629 24.5 109.0 66.8 0.1 11794634 chrX 855280 intron CG43867 - chrX 6752597 intron CG14439 + chrX 12649914 intron Tomosyn + chrX_6_6750001 chrX_6750001 RAL-340_100b 3783 chrX 906682 906728 chrX 908496 908542 S-element 31 1810 14.5 14.0 14.2 2.0 1860 chrX 906682 intron CG43867 - chrX 907612 intron CG43867 - chrX 908542 intron CG43867 - chrX_31_905001 chrX_905001 RAL-340_100b 3784 chrX 1053116 1053120 chrX 16983076 16983077 28 15929957 26.5 20.5 23.5 1.1 15929961 chrX 1053116 intron CR44779 + chrX 9018096 intron,intron rdgA +,CR43836 - chrX 16983077 intron CG45002 - chrX_28_9015001 chrX_9015001 RAL-340_100b 3785 chrX 1058185 1058220 chrX 1058363 1058393 20 184 6.0 6.5 6.2 2.8 208 chrX 1058185 intron CR44779 + chrX 1058289 intron CR44779 + chrX 1058393 intron CR44779 + chrX_20_1055001 chrX_1055001 RAL-340_100b 3786 chrX 1518032 1518072 chrX 1523444 1523468 jockey 20 5420 5.5 6.5 6.0 2.9 5436 chrX 1518032 intergenic inc + chrX 1520750 intergenic not near genes chrX 1523468 intergenic not near genes chrX_20_1520001 chrX_1520001 RAL-340_100b 3787 chrX 1627964 1627974 chrX 1635454 1635467 gtwin 18 7492 33.5 25.5 29.5 0.6 7503 chrX 1627964 intron,intron Mur2B -,br + chrX 1631716 intron,intron Mur2B -,br + chrX 1635467 intron,intron Mur2B -,br + chrX_18_1630001 chrX_1630001 RAL-340_100b 3788 chrX 1627975 1627981 chrX 1635446 1635463 gtwin 5 7485 28.0 21.5 24.8 0.2 7488 chrX 1627975 intron,intron Mur2B -,br + chrX 1631719 intron,intron Mur2B -,br + chrX 1635463 intron,intron Mur2B -,br + chrX_5_1630001 chrX_1630001 RAL-340_100b 3789 chrX 1627989 1628003 chrX 1635443 1635469 gtwin 4 7469 16.5 21.5 19.0 0.2 7480 chrX 1627989 intron,intron Mur2B -,br + chrX 1631729 intron,intron Mur2B -,br + chrX 1635469 intron,intron Mur2B -,br + chrX_4_1630001 chrX_1630001 RAL-340_100b 3790 chrX 1706682 1706709 chrX 1706790 1706833 22 118 10.0 12.5 11.2 1.8 151 chrX 1706682 intergenic not near genes chrX 1706758 intergenic not near genes chrX 1706833 intergenic not near genes chrX_22_1705001 chrX_1705001 RAL-340_100b 3791 chrX 1706714 1706719 chrX 1706793 1706817 9 109 8.0 14.0 11.0 0.8 103 chrX 1706714 intergenic not near genes chrX 1706766 intergenic not near genes chrX 1706817 intergenic not near genes chrX_9_1705001 chrX_1705001 RAL-340_100b 3792 chrX 1790340 1790392 chrX 1790460 1790512 11 118 6.5 8.0 7.2 1.3 172 chrX 1790340 intron,3` UTR CG42666 +,CG32806 + chrX 1790426 intron CG42666 + chrX 1790512 intron CG42666 + chrX_11_1790001 chrX_1790001 RAL-340_100b 3793 chrX 1930517 1930569 chrX 1938113 1938130 opus 25 7590 1.0 7.0 4.0 5.0 7613 chrX 1930517 3` UTR CG11596 + chrX 1934324 intergenic not near genes chrX 1938130 3` UTR CG3857 - chrX_25_1930001 chrX_1930001 RAL-340_100b 3794 chrX 1954862 1954919 chrX 1962827 1962862 Stalker2 14 7954 5.0 7.0 6.0 2.0 8000 chrX 1954862 intron Hr4 + chrX 1958862 intron Hr4 + chrX 1962862 intron Hr4 + chrX_14_1955001 chrX_1955001 RAL-340_100b 3795 chrX 1987466 1987507 chrX 1987595 1987611 12 126 10.5 9.0 9.8 1.1 145 chrX 1987466 intron Hr4 + chrX 1987538 intron Hr4 + chrX 1987611 intron Hr4 + chrX_12_1985001 chrX_1985001 RAL-340_100b 3796 chrX 2146630 2146686 chrX 2146747 2146757 22 110 15.5 12.5 14.0 1.5 127 chrX 2146630 intron Pgd + chrX 2146694 intron Pgd + chrX 2146757 intron Pgd + chrX_22_2145001 chrX_2145001 RAL-340_100b 3797 chrX 2291624 2291673 chrX 2291723 2291788 20 99 5.5 0.0 2.8 5.3 164 chrX 2291624 intron CG2865 - chrX 2291706 intron CG2865 - chrX 2291788 intron CG2865 - chrX_20_2290001 chrX_2290001 RAL-340_100b 3798 chrX 2326201 2326247 chrX 2326292 2326299 28 87 11.0 5.0 8.0 3.1 98 chrX 2326201 intron,5` UTR phl +,CG14050 - chrX 2326250 intron phl + chrX 2326299 intron phl + chrX_28_2325001 chrX_2325001 RAL-340_100b 3799 chrX 2385724 2385758 chrX 2385817 2385861 10 100 4.5 5.5 5.0 1.7 137 chrX 2385724 exon PsGEF - chrX 2385792 intron PsGEF - chrX 2385861 intron PsGEF - chrX_10_2385001 chrX_2385001 RAL-340_100b 3800 chrX 2397922 2397935 chrX 2398022 2398023 5 92 3.0 5.0 4.0 1.0 101 chrX 2397922 intergenic not near genes chrX 2397972 intergenic not near genes chrX 2398023 intergenic not near genes chrX_5_2395001 chrX_2395001 RAL-340_100b 3801 chrX 2399818 2399855 chrX 2408195 2408228 roo 12 8373 8.5 6.0 7.2 1.5 8410 chrX 2399818 intergenic not near genes chrX 2404023 intergenic not near genes chrX 2408228 intergenic not near genes chrX_12_2400001 chrX_2400001 RAL-340_100b 3802 chrX 2399856 2399864 chrX 2408194 2408236 roo 6 8364 7.5 6.0 6.8 0.8 8380 chrX 2399856 intergenic not near genes chrX 2404046 intergenic not near genes chrX 2408236 intergenic not near genes chrX_6_2400001 chrX_2400001 RAL-340_100b 3803 chrX 2429659 2429668 chrX 2429753 2429774 6 103 0.5 13.5 7.0 0.8 115 chrX 2429659 intergenic not near genes chrX 2429716 intergenic not near genes chrX 2429774 intergenic not near genes chrX_6_2425001 chrX_2425001 RAL-340_100b 3804 chrX 2496135 2496146 chrX 2496320 2496331 5 184 43.5 32.0 37.8 0.1 196 chrX 2496135 intron trol - chrX 2496233 intron trol - chrX 2496331 intron trol - chrX_5_2495001 chrX_2495001 RAL-340_100b 3805 chrX 2496147 2496192 chrX 2496316 2496372 46 174 24.0 27.5 25.8 1.7 225 chrX 2496147 intron trol - chrX 2496260 intron trol - chrX 2496372 intron trol - chrX_46_2495001 chrX_2495001 RAL-340_100b 3806 chrX 2539279 2539285 chrX 2539485 2539531 7 238 4.5 9.5 7.0 0.9 252 chrX 2539279 intron trol - chrX 2539405 intron trol - chrX 2539531 intron trol - chrX_7_2535001 chrX_2535001 RAL-340_100b 3807 chrX 2552774 2552818 chrX 2552923 2552942 20 145 13.5 11.0 12.2 1.5 168 chrX 2552774 intron Pdfr + chrX 2552858 intron Pdfr + chrX 2552942 intron Pdfr + chrX_20_2550001 chrX_2550001 RAL-340_100b 3808 chrX 2610365 2610415 chrX 2617507 2617557 HMS-Beagle 8 7142 11.0 5.0 8.0 0.9 7192 chrX 2610365 intergenic CG8636 - chrX 2613961 intergenic not near genes chrX 2617557 intergenic Tsp3A - chrX_8_2610001 chrX_2610001 RAL-340_100b 3809 chrX 2664356 2664402 chrX 2665537 2665573 1360 7 1168 1.5 0.5 1.0 3.5 1217 chrX 2664356 intron sgg + chrX 2664964 intron sgg + chrX 2665573 intron sgg + chrX_7_2660001 chrX_2660001 RAL-340_100b 3810 chrX 2694409 2694450 chrX 2694508 2694516 13 93 9.0 3.0 6.0 1.9 107 chrX 2694409 3` UTR CG2658 - chrX 2694462 3` UTR CG2658 - chrX 2694516 3` UTR CG2658 - chrX_13_2690001 chrX_2690001 RAL-340_100b 3811 chrX 2752211 2752267 chrX 2752318 2752363 9 102 5.5 8.0 6.8 1.2 152 chrX 2752211 intron kirre + chrX 2752287 intron kirre + chrX 2752363 intron kirre + chrX_9_2750001 chrX_2750001 RAL-340_100b 3812 chrX 2808914 2808923 chrX 2809019 2809028 4 105 36.0 53.0 44.5 0.1 114 chrX 2808914 intron kirre + chrX 2808971 intron kirre + chrX 2809028 intron kirre + chrX_4_2805001 chrX_2805001 RAL-340_100b 3813 chrX 2823775 2823778 chrX 2832343 2832346 roo 4 8568 27.0 19.5 23.2 0.2 8571 chrX 2823775 intron kirre + chrX 2828060 intron kirre + chrX 2832346 intron kirre + chrX_4_2825001 chrX_2825001 RAL-340_100b 3814 chrX 2844876 2844930 chrX 2852311 2852365 mdg1 20 7432 10.5 5.5 8.0 2.2 7489 chrX 2844876 intron kirre + chrX 2848620 intron kirre + chrX 2852365 intron kirre + chrX_20_2845001 chrX_2845001 RAL-340_100b 3815 chrX 2912308 2912322 chrX 2912676 2912709 15 385 10.5 9.5 10.0 1.4 401 chrX 2912308 intron kirre + chrX 2912508 intron kirre + chrX 2912709 intron kirre + chrX_15_2910001 chrX_2910001 RAL-340_100b 3816 chrX 3031138 3031189 chrX 3031239 3031295 17 95 15.0 4.5 9.8 1.6 157 chrX 3031138 intron kirre + chrX 3031216 intron kirre + chrX 3031295 intron kirre + chrX_17_3030001 chrX_3030001 RAL-340_100b 3817 chrX 3058002 3058026 chrX 3058268 3058292 pogo 10 266 14.0 7.5 10.8 0.8 290 chrX 3058002 intron kirre + chrX 3058147 intron kirre + chrX 3058292 intron kirre + chrX_10_3055001 chrX_3055001 RAL-340_100b 3818 chrX 3058030 3058037 chrX 3058266 3058303 pogo 5 259 11.5 6.5 9.0 0.5 273 chrX 3058030 intron kirre + chrX 3058166 intron kirre + chrX 3058303 intron kirre + chrX_5_3055001 chrX_3055001 RAL-340_100b 3819 chrX 3075633 3075658 chrX 3080944 3080944 Transpac 15 5323 9.5 6.0 7.8 1.7 5311 chrX 3075633 intron kirre + chrX 3078288 intron kirre + chrX 3080944 intron kirre + chrX_15_3075001 chrX_3075001 RAL-340_100b 3820 chrX 3103470 3103474 chrX 3103581 3103582 4 110 27.5 6.0 16.8 0.2 112 chrX 3103470 intron kirre + chrX 3103526 intron kirre + chrX 3103582 intron kirre + chrX_4_3100001 chrX_3100001 RAL-340_100b 3821 chrX 3109421 3109469 chrX 3109523 3109571 15 99 3.0 2.5 2.8 3.9 150 chrX 3109421 intron kirre + chrX 3109496 intron kirre + chrX 3109571 intron kirre + chrX_15_3105001 chrX_3105001 RAL-340_100b 3822 chrX 3188421 3188467 chrX 3188601 3188647 8 178 10.5 3.5 7.0 1.0 226 chrX 3188421 intron dnc + chrX 3188534 intron dnc + chrX 3188647 intron dnc + chrX_8_3185001 chrX_3185001 RAL-340_100b 3823 chrX 3243607 3243659 chrX 3243721 3243724 9 109 3.5 5.5 4.5 1.6 117 chrX 3243607 intron dnc + chrX 3243666 intron dnc + chrX 3243724 intron dnc + chrX_9_3240001 chrX_3240001 RAL-340_100b 3824 chrX 3247415 3247472 chrX 3247521 3247552 30 101 7.0 10.0 8.5 3.2 137 chrX 3247415 intron dnc + chrX 3247484 intron dnc + chrX 3247552 intron dnc + chrX_30_3245001 chrX_3245001 RAL-340_100b 3825 chrX 3306327 3306366 chrX 3306427 3306445 10 104 11.5 1.0 6.2 1.4 118 chrX 3306327 intron dnc + chrX 3306386 intron dnc + chrX 3306445 intron dnc + chrX_10_3305001 chrX_3305001 RAL-340_100b 3826 chrX 3351793 3351808 chrX 3351889 3351919 8 107 21.5 45.0 33.2 0.2 126 chrX 3351793 intergenic not near genes chrX 3351856 intergenic not near genes chrX 3351919 intergenic not near genes chrX_8_3350001 chrX_3350001 RAL-340_100b 3827 chrX 3415013 3415049 chrX 3421203 3421259 3S18 18 6207 1.0 10.0 5.5 2.8 6246 chrX 3415013 intron,intron CR44999 +,CG12535 - chrX 3418136 intron,intron CR44999 +,CG12535 - chrX 3421259 intron,intron CR44999 +,CG12535 - chrX_18_3415001 chrX_3415001 RAL-340_100b 3828 chrX 3493064 3493121 chrX 3502248 3502288 roo 15 9182 5.0 2.0 3.5 3.3 9224 chrX 3493064 intron,intron CR44999 +,Gas8 - chrX 3497676 intron,intron CR44999 +,Gas8 - chrX 3502288 intron,intron CR44999 +,Gas8 - chrX_15_3495001 chrX_3495001 RAL-340_100b 3829 chrX 3513736 3513742 chrX 3513844 3513850 7 108 26.5 3.5 15.0 0.4 114 chrX 3513736 intron,intron CR44999 +,CG32791 - chrX 3513793 intron,intron CR44999 +,CG32791 - chrX 3513850 intron,intron CR44999 +,CG32791 - chrX_7_3510001 chrX_3510001 RAL-340_100b 3830 chrX 3513743 3513790 chrX 3513843 3513898 33 107 7.0 3.5 5.2 5.3 155 chrX 3513743 intron,intron CR44999 +,CG32791 - chrX 3513820 intron,intron CR44999 +,CG32791 - chrX 3513898 intron,intron CR44999 +,CG32791 - chrX_33_3510001 chrX_3510001 RAL-340_100b 3831 chrX 3597093 3597126 chrX 3597206 3597239 14 113 2.5 8.5 5.5 2.2 146 chrX 3597093 intron AstA-R1 + chrX 3597166 intron AstA-R1 + chrX 3597239 intron AstA-R1 + chrX_14_3595001 chrX_3595001 RAL-340_100b 3832 chrX 3597533 3597561 chrX 3619726 3619754 roo 11 22192 15.0 5.5 10.2 1.0 22221 chrX 3597533 intron AstA-R1 + chrX 3608644 intron AstA-R1 + chrX 3619754 intron AstA-R1 + chrX_11_3605001 chrX_3605001 RAL-340_100b 3833 chrX 3597568 3597581 chrX 3619718 3619739 roo 9 22184 9.5 3.0 6.2 1.2 22171 chrX 3597568 intron AstA-R1 + chrX 3608654 intron AstA-R1 + chrX 3619739 intron AstA-R1 + chrX_9_3605001 chrX_3605001 RAL-340_100b 3834 chrX 3630532 3630575 chrX 3630619 3630676 29 99 3.5 5.5 4.5 5.3 144 chrX 3630532 intron AstA-R1 + chrX 3630604 intron AstA-R1 + chrX 3630676 intron AstA-R1 + chrX_29_3630001 chrX_3630001 RAL-340_100b 3835 chrX 3703683 3703712 chrX 3703796 3703800 11 107 20.5 6.0 13.2 0.8 117 chrX 3703683 intergenic CR45102 + chrX 3703742 intergenic CR45102 + chrX 3703800 intergenic not near genes chrX_11_3700001 chrX_3700001 RAL-340_100b 3836 chrX 3726742 3726758 chrX 3730164 3730175 NOF 11 3419 25.5 1.0 13.2 0.8 3433 chrX 3726742 intron tlk + chrX 3728458 intron tlk + chrX 3730175 intron tlk + chrX_11_3725001 chrX_3725001 RAL-340_100b 3837 chrX 3726759 3726795 chrX 3730160 3730177 NOF 20 3412 19.5 1.0 10.2 1.8 3418 chrX 3726759 intron tlk + chrX 3728468 intron tlk + chrX 3730177 intron tlk + chrX_20_3725001 chrX_3725001 RAL-340_100b 3838 chrX 3768252 3768287 chrX 3768354 3768389 7 99 10.5 17.5 14.0 0.5 137 chrX 3768252 intron tlk + chrX 3768320 intron tlk + chrX 3768389 intron tlk + chrX_7_3765001 chrX_3765001 RAL-340_100b 3839 chrX 3798047 3798068 chrX 3798163 3798168 4 112 4.0 15.0 9.5 0.4 121 chrX 3798047 intergenic not near genes chrX 3798108 intergenic not near genes chrX 3798168 intergenic not near genes chrX_4_3795001 chrX_3795001 RAL-340_100b 3840 chrX 3880475 3880488 chrX 3880557 3880594 6 105 4.0 15.0 9.5 0.6 119 chrX 3880475 intergenic VhaAC39-1 + chrX 3880534 intergenic VhaAC39-1 + chrX 3880594 intergenic VhaAC39-1 + chrX_6_3880001 chrX_3880001 RAL-340_100b 3841 chrX 3881246 3881305 chrX 3881410 3881468 38 160 4.0 8.5 6.2 5.3 222 chrX 3881246 intron VhaAC39-1 + chrX 3881357 intron VhaAC39-1 + chrX 3881468 exon VhaAC39-1 + chrX_38_3880001 chrX_3880001 RAL-340_100b 3842 chrX 3890647 3890678 chrX 3890989 3891028 14 346 9.0 8.0 8.5 1.5 381 chrX 3890647 intergenic CG15239 + chrX 3890838 intergenic CG15239 + chrX 3891028 intergenic CG42541 - chrX_14_3890001 chrX_3890001 RAL-340_100b 3843 chrX 3899604 3899612 chrX 3899706 3899714 6 101 41.0 42.5 41.8 0.1 110 chrX 3899604 intron CG42541 - chrX 3899659 intron CG42541 - chrX 3899714 intron CG42541 - chrX_6_3895001 chrX_3895001 RAL-340_100b 3844 chrX 3915494 3915547 chrX 3915606 3915659 17 110 6.0 10.0 8.0 1.9 165 chrX 3915494 intron CG42541 - chrX 3915576 intron CG42541 - chrX 3915659 intron CG42541 - chrX_17_3915001 chrX_3915001 RAL-340_100b 3845 chrX 3986836 3986894 chrX 3994494 3994522 412 44 7651 15.0 6.5 10.8 3.7 7686 chrX 3986836 intergenic not near genes chrX 3990679 intergenic not near genes chrX 3994522 intergenic not near genes chrX_44_3990001 chrX_3990001 RAL-340_100b 3846 chrX 4048477 4048517 chrX 4048578 4048618 11 96 9.5 3.0 6.2 1.5 141 chrX 4048477 3` UTR CR45482 - chrX 4048548 3` UTR CR45482 - chrX 4048618 3` UTR CR45482 - chrX_11_4045001 chrX_4045001 RAL-340_100b 3847 chrX 4067987 4067987 chrX 10754861 10754863 7 6686874 18.5 27.5 23.0 0.3 6686876 chrX 4067987 intergenic not near genes chrX 7411425 3` UTR CG42246 - chrX 10754863 intron Rph - chrX_7_7410001 chrX_7410001 RAL-340_100b 3848 chrX 4067988 4067988 chrX 10754861 10754861 8 6686873 18.5 27.5 23.0 0.3 6686873 chrX 4067988 intergenic not near genes chrX 7411424 3` UTR CG42246 - chrX 10754861 intron Rph - chrX_8_7410001 chrX_7410001 RAL-340_100b 3849 chrX 4101844 4101850 chrX 4101947 4101954 6 104 5.5 2.0 3.8 1.2 110 chrX 4101844 exon CG15375 + chrX 4101899 exon CG15375 + chrX 4101954 exon CG15375 + chrX_6_4100001 chrX_4100001 RAL-340_100b 3850 chrX 4101851 4101897 chrX 4101945 4101992 13 100 3.5 2.0 2.8 3.4 141 chrX 4101851 exon CG15375 + chrX 4101922 exon CG15375 + chrX 4101992 exon CG15375 + chrX_13_4100001 chrX_4100001 RAL-340_100b 3851 chrX 4157871 4157909 chrX 4164949 4164987 297 16 7076 7.5 6.0 6.8 2.1 7116 chrX 4157871 intron Fas2 - chrX 4161429 intron Fas2 - chrX 4164987 intron Fas2 - chrX_16_4160001 chrX_4160001 RAL-340_100b 3852 chrX 4168799 4168851 chrX 4169313 4169365 18 509 4.5 7.0 5.8 2.6 566 chrX 4168799 intron Fas2 - chrX 4169082 intron Fas2 - chrX 4169365 intron Fas2 - chrX_18_4165001 chrX_4165001 RAL-340_100b 3853 chrX 4186821 4186821 chrX 4617440 4617443 9 430621 46.0 37.5 41.8 0.2 430622 chrX 4186821 intron Fas2 - chrX 4402132 intron CR32773 - chrX 4617443 intergenic peb + chrX_9_4400001 chrX_4400001 RAL-340_100b 3854 chrX 4186821 4186821 chrX 9312363 9312364 33 5125543 46.0 37.0 41.5 0.8 5125543 chrX 4186821 intron Fas2 - chrX 6749592 intron CG14439 + chrX 9312364 intergenic not near genes chrX_33_6745001 chrX_6745001 RAL-340_100b 3855 chrX 4186822 4186822 chrX 4617441 4617445 18 430620 46.0 37.0 41.5 0.4 430623 chrX 4186822 intron Fas2 - chrX 4402134 intron CR32773 - chrX 4617445 intergenic peb + chrX_18_4400001 chrX_4400001 RAL-340_100b 3856 chrX 4186822 4186822 chrX 9312363 9312388 15 5125543 46.0 37.0 41.5 0.4 5125566 chrX 4186822 intron Fas2 - chrX 6749605 intron CG14439 + chrX 9312388 intergenic not near genes chrX_15_6745001 chrX_6745001 RAL-340_100b 3857 chrX 4203495 4203547 chrX 4203598 4203643 20 100 11.5 11.0 11.2 1.6 148 chrX 4203495 intron Fas2 - chrX 4203569 intron Fas2 - chrX 4203643 intron Fas2 - chrX_20_4200001 chrX_4200001 RAL-340_100b 3858 chrX 4209902 4209955 chrX 4210017 4210069 6 114 0.0 8.0 4.0 1.2 167 chrX 4209902 intergenic not near genes chrX 4209986 intergenic not near genes chrX 4210069 intergenic not near genes chrX_6_4205001 chrX_4205001 RAL-340_100b 3859 chrX 4216318 4216337 chrX 4216422 4216441 8 104 10.5 9.5 10.0 0.7 123 chrX 4216318 intergenic not near genes chrX 4216380 intergenic CG15571 - chrX 4216441 intergenic CG15571 - chrX_8_4215001 chrX_4215001 RAL-340_100b 3860 chrX 4324367 4324411 chrX 4324469 4324508 17 100 3.0 4.0 3.5 3.8 141 chrX 4324367 intron norpA + chrX 4324438 intron norpA + chrX 4324508 intron norpA + chrX_17_4320001 chrX_4320001 RAL-340_100b 3861 chrX 4343878 4343892 chrX 4344012 4344014 6 133 4.0 7.5 5.8 0.9 136 chrX 4343878 intron norpA + chrX 4343946 intron norpA + chrX 4344014 intron norpA + chrX_6_4340001 chrX_4340001 RAL-340_100b 3862 chrX 4343893 4343897 chrX 4344006 4344036 5 133 2.0 6.0 4.0 1.0 143 chrX 4343893 intron norpA + chrX 4343964 intron norpA + chrX 4344036 intron norpA + chrX_5_4340001 chrX_4340001 RAL-340_100b 3863 chrX 4361408 4361436 chrX 4361510 4361523 24 98 20.0 21.5 20.8 1.1 115 chrX 4361408 intron norpA + chrX 4361466 intron norpA + chrX 4361523 intron norpA + chrX_24_4360001 chrX_4360001 RAL-340_100b 3864 chrX 4361437 4361452 chrX 4361538 4361554 8 99 11.5 39.5 25.5 0.3 117 chrX 4361437 intron norpA + chrX 4361496 intron norpA + chrX 4361554 intron norpA + chrX_8_4360001 chrX_4360001 RAL-340_100b 3865 chrX 4361455 4361457 chrX 4361519 4361553 5 89 9.5 27.5 18.5 0.3 98 chrX 4361455 intron norpA + chrX 4361504 intron norpA + chrX 4361553 intron norpA + chrX_5_4360001 chrX_4360001 RAL-340_100b 3866 chrX 4389377 4389380 chrX 12946233 12946235 38 8556857 28.5 31.5 30.0 1.2 8556858 chrX 4389377 intron CR32773 - chrX 8667806 intergenic not near genes chrX 12946235 3` UTR fne + chrX_38_8665001 chrX_8665001 RAL-340_100b 3867 chrX 4409114 4409158 chrX 4409224 4409238 9 102 10.5 5.5 8.0 1.0 124 chrX 4409114 intron CR32773 - chrX 4409176 intron CR32773 - chrX 4409238 intron CR32773 - chrX_9_4405001 chrX_4405001 RAL-340_100b 3868 chrX 4436456 4436492 chrX 4436537 4436539 4 65 6.5 0.5 3.5 0.9 83 chrX 4436456 intron,intron CR32773 -,bi + chrX 4436498 intron,intron CR32773 -,bi + chrX 4436539 intron,intron CR32773 -,bi + chrX_4_4435001 chrX_4435001 RAL-340_100b 3869 chrX 4617441 4617441 chrX 18826338 18826348 7 14208901 31.0 33.0 32.0 0.2 14208907 chrX 4617441 intergenic peb + chrX 11721894 exon Tango10 + chrX 18826348 intron CG42450 + chrX_7_11720001 chrX_11720001 RAL-340_100b 3870 chrX 4617442 4617442 chrX 12649914 12649915 5 8032472 31.0 109.0 70.0 0.1 8032473 chrX 4617442 intergenic peb + chrX 8633678 exon oc - chrX 12649915 intron Tomosyn + chrX_5_8630001 chrX_8630001 RAL-340_100b 3871 chrX 4186821 4186822 chrX 4617443 4617443 5 430621 46.0 36.0 41.0 0.1 430622 chrX 4186821 intron Fas2 - chrX 4402132 intron CR32773 - chrX 4617443 intergenic peb + chrX_5_4400001 chrX_4400001 RAL-340_100b 3872 chrX 4617443 4617443 chrX 12649914 12649915 4 8032472 30.0 109.0 69.5 0.1 8032472 chrX 4617443 intergenic peb + chrX 8633679 exon oc - chrX 12649915 intron Tomosyn + chrX_4_8630001 chrX_8630001 RAL-340_100b 3873 chrX 4660794 4660821 chrX 4660918 4660945 7 124 22.0 0.0 11.0 0.6 151 chrX 4660794 intron CG3009 - chrX 4660870 intron CG3009 - chrX 4660945 intron CG3009 - chrX_7_4660001 chrX_4660001 RAL-340_100b 3874 chrX 4693769 4693783 chrX 4693854 4693903 11 109 0.0 7.5 3.8 2.3 134 chrX 4693769 intron ctp + chrX 4693836 intron ctp + chrX 4693903 intron ctp + chrX_11_4690001 chrX_4690001 RAL-340_100b 3875 chrX 4700368 4700422 chrX 4700736 4700790 jockey 23 366 10.5 10.0 10.2 2.1 422 chrX 4700368 3` UTR ctp + chrX 4700579 3` UTR ctp + chrX 4700790 3` UTR ctp + chrX_23_4700001 chrX_4700001 RAL-340_100b 3876 chrX 4723548 4723583 chrX 4723653 4723687 22 101 19.0 11.0 15.0 1.4 139 chrX 4723548 exon Proc-R + chrX 4723618 intron Proc-R + chrX 4723687 intron Proc-R + chrX_22_4720001 chrX_4720001 RAL-340_100b 3877 chrX 4731792 4731805 chrX 4736910 4736921 jockey 18 5117 37.0 21.0 29.0 0.6 5129 chrX 4731792 intergenic not near genes chrX 4734356 intergenic not near genes chrX 4736921 intergenic not near genes chrX_18_4730001 chrX_4730001 RAL-340_100b 3878 chrX 4731806 4731813 chrX 4736918 4736921 jockey 5 5115 34.5 27.0 30.8 0.2 5115 chrX 4731806 intergenic not near genes chrX 4734364 intergenic not near genes chrX 4736921 intergenic not near genes chrX_5_4730001 chrX_4730001 RAL-340_100b 3879 chrX 4744156 4744167 chrX 4744272 4744290 5 122 3.0 2.0 2.5 1.4 134 chrX 4744156 intergenic not near genes chrX 4744223 intergenic not near genes chrX 4744290 intergenic not near genes chrX_5_4740001 chrX_4740001 RAL-340_100b 3880 chrX 4759371 4759403 chrX 4759472 4759503 19 98 17.5 31.5 24.5 0.7 132 chrX 4759371 intergenic not near genes chrX 4759437 intergenic not near genes chrX 4759503 intergenic not near genes chrX_19_4755001 chrX_4755001 RAL-340_100b 3881 chrX 4763226 4763279 chrX 4763739 4763792 Stalker4 24 512 7.0 11.0 9.0 2.4 566 chrX 4763226 intergenic not near genes chrX 4763509 intergenic not near genes chrX 4763792 intergenic not near genes chrX_24_4760001 chrX_4760001 RAL-340_100b 3882 chrX 4788221 4788247 chrX 4788322 4788347 6 101 12.0 4.5 8.2 0.7 126 chrX 4788221 intergenic not near genes chrX 4788284 intergenic not near genes chrX 4788347 intergenic not near genes chrX_6_4785001 chrX_4785001 RAL-340_100b 3883 chrX 4792361 4792407 chrX 4792818 4792818 jockey 16 453 3.0 5.5 4.2 3.1 457 chrX 4792361 intergenic not near genes chrX 4792590 intergenic not near genes chrX 4792818 intergenic not near genes chrX_16_4790001 chrX_4790001 RAL-340_100b 3884 chrX 4816882 4816927 chrX 4816990 4817036 12 108 4.0 8.0 6.0 1.7 154 chrX 4816882 intergenic not near genes chrX 4816959 intergenic not near genes chrX 4817036 intergenic not near genes chrX_12_4815001 chrX_4815001 RAL-340_100b 3885 chrX 4827963 4827983 chrX 4835359 4835379 Stalker4 4 7396 5.5 9.5 7.5 0.5 7416 chrX 4827963 intergenic not near genes chrX 4831671 intergenic not near genes chrX 4835379 intergenic not near genes chrX_4_4830001 chrX_4830001 RAL-340_100b 3886 chrX 4827988 4827994 chrX 4835338 4835338 Stalker4 6 7362 4.0 7.0 5.5 0.9 7350 chrX 4827988 intergenic not near genes chrX 4831663 intergenic not near genes chrX 4835338 intergenic not near genes chrX_6_4830001 chrX_4830001 RAL-340_100b 3887 chrX 4835560 4835600 chrX 4835910 4835912 8 347 4.5 3.0 3.8 1.7 352 chrX 4835560 intergenic not near genes chrX 4835736 intergenic not near genes chrX 4835912 intergenic not near genes chrX_8_4835001 chrX_4835001 RAL-340_100b 3888 chrX 4865340 4865388 chrX 4865444 4865489 17 103 13.0 15.5 14.2 1.1 149 chrX 4865340 intron CG42594 + chrX 4865414 intron CG42594 + chrX 4865489 intron CG42594 + chrX_17_4865001 chrX_4865001 RAL-340_100b 3889 chrX 4878872 4878896 chrX 4879006 4879030 7 134 3.5 2.5 3.0 1.8 158 chrX 4878872 intron CG42594 + chrX 4878951 intron CG42594 + chrX 4879030 intron CG42594 + chrX_7_4875001 chrX_4875001 RAL-340_100b 3890 chrX 4901528 4901568 chrX 4901834 4901874 27 305 4.0 6.5 5.2 4.4 346 chrX 4901528 intron CG42594 + chrX 4901701 intron CG42594 + chrX 4901874 intron CG42594 + chrX_27_4900001 chrX_4900001 RAL-340_100b 3891 chrX 4979862 4979887 chrX 4979970 4979995 13 106 0.5 10.5 5.5 2.0 133 chrX 4979862 intron CR44833 - chrX 4979928 intron CR44833 - chrX 4979995 intron CR44833 - chrX_13_4975001 chrX_4975001 RAL-340_100b 3892 chrX 4979900 4979914 chrX 4979967 4980022 16 98 0.5 9.0 4.8 2.8 122 chrX 4979900 intron CR44833 - chrX 4979961 intron CR44833 - chrX 4980022 intron CR44833 - chrX_16_4975001 chrX_4975001 RAL-340_100b 3893 chrX 4990022 4990069 chrX 4997261 4997301 roo 24 7238 3.5 7.0 5.2 3.9 7279 chrX 4990022 intron CR44833 - chrX 4993662 intron CR44833 - chrX 4997301 intron CR44833 - chrX_24_4990001 chrX_4990001 RAL-340_100b 3894 chrX 5089426 5089453 chrX 5089534 5089551 11 105 35.5 20.5 28.0 0.4 125 chrX 5089426 5` UTR,5` UTR CG15465 +,rg + chrX 5089488 5` UTR,5` UTR CG15465 +,rg + chrX 5089551 5` UTR,5` UTR CG15465 +,rg + chrX_11_5085001 chrX_5085001 RAL-340_100b 3895 chrX 5096260 5096300 chrX 5103845 5103887 springer 10 7577 9.5 11.5 10.5 0.9 7627 chrX 5096260 intron,intron CG15465 +,rg + chrX 5100074 intron,intron CG15465 +,rg + chrX 5103887 intron,intron CG15465 +,rg + chrX_10_5100001 chrX_5100001 RAL-340_100b 3896 chrX 5120640 5120661 chrX 5120773 5120781 10 134 10.0 9.5 9.8 0.9 141 chrX 5120640 intron,intron CG15465 +,rg + chrX 5120710 intron,intron CG15465 +,rg + chrX 5120781 intron,intron CG15465 +,rg + chrX_10_5120001 chrX_5120001 RAL-340_100b 3897 chrX 5222357 5222412 chrX 10911030 10911046 4 5688660 53.0 41.5 47.2 0.1 5688689 chrX 5222357 intron,intron CG15465 +,rg + chrX 8066702 intron mys + chrX 10911046 intron CG43901 + chrX_4_8065001 chrX_8065001 RAL-340_100b 3898 chrX 5323097 5323156 chrX 5323398 5323439 5 295 0.0 4.5 2.2 1.6 342 chrX 5323097 intergenic Rnp4F - chrX 5323268 intergenic not near genes chrX 5323439 intergenic Mcm3 + chrX_5_5320001 chrX_5320001 RAL-340_100b 3899 chrX 5338682 5338717 chrX 5339960 5339995 jockey 15 1275 16.5 12.0 14.2 1.0 1313 chrX 5338682 intergenic not near genes chrX 5339338 intergenic not near genes chrX 5339995 intergenic SK + chrX_15_5335001 chrX_5335001 RAL-340_100b 3900 chrX 5345369 5345429 chrX 5345505 5345565 26 130 2.0 6.5 4.2 5.0 196 chrX 5345369 intron SK + chrX 5345467 intron SK + chrX 5345565 intron SK + chrX_26_5345001 chrX_5345001 RAL-340_100b 3901 chrX 5349251 5349305 chrX 5349353 5349407 11 100 3.5 4.5 4.0 2.2 156 chrX 5349251 intron SK + chrX 5349329 intron SK + chrX 5349407 intron SK + chrX_11_5345001 chrX_5345001 RAL-340_100b 3902 chrX 5366290 5366334 chrX 5366443 5366487 16 153 3.0 2.5 2.8 4.2 197 chrX 5366290 intron SK + chrX 5366388 intron SK + chrX 5366487 intron SK + chrX_16_5365001 chrX_5365001 RAL-340_100b 3903 chrX 5456563 5456614 chrX 5456704 5456755 19 138 4.0 14.5 9.2 1.9 192 chrX 5456563 intron SPR + chrX 5456659 intron SPR + chrX 5456755 intron SPR + chrX_19_5455001 chrX_5455001 RAL-340_100b 3904 chrX 5457475 5457509 chrX 5457586 5457622 8 116 12.0 0.0 6.0 1.1 147 chrX 5457475 intron SPR + chrX 5457548 intron SPR + chrX 5457622 intron SPR + chrX_8_5455001 chrX_5455001 RAL-340_100b 3905 chrX 5473562 5473613 chrX 5473663 5473681 14 96 11.0 4.0 7.5 1.6 119 chrX 5473562 intron SPR + chrX 5473622 intron SPR + chrX 5473681 intron SPR + chrX_14_5470001 chrX_5470001 RAL-340_100b 3906 chrX 5512033 5512086 chrX 5512141 5512198 6 109 4.5 0.0 2.2 1.9 165 chrX 5512033 intergenic not near genes chrX 5512116 intergenic not near genes chrX 5512198 intergenic not near genes chrX_6_5510001 chrX_5510001 RAL-340_100b 3907 chrX 5524815 5524873 chrX 5528703 5528709 412 12 3882 6.0 2.5 4.2 2.3 3894 chrX 5524815 intergenic snoRNA:Psi28S-3342 - chrX 5526762 intergenic not near genes chrX 5528709 intergenic Vsx2 - chrX_12_5525001 chrX_5525001 RAL-340_100b 3908 chrX 5555349 5555387 chrX 5555498 5555536 15 145 8.5 8.5 8.5 1.6 187 chrX 5555349 intron Vsx2 - chrX 5555442 intron Vsx2 - chrX 5555536 intron Vsx2 - chrX_15_5555001 chrX_5555001 RAL-340_100b 3909 chrX 5714291 5714334 chrX 5714398 5714441 20 103 10.5 9.0 9.8 1.9 150 chrX 5714291 intron CG33080 - chrX 5714366 intron CG33080 - chrX 5714441 intron CG33080 - chrX_20_5710001 chrX_5710001 RAL-340_100b 3910 chrX 5727401 5727416 chrX 5732165 5732180 Doc 4 4764 4.0 5.5 4.8 0.7 4779 chrX 5727401 intron CG32758 - chrX 5729790 intron CG32758 - chrX 5732180 intron CG32758 - chrX_4_5725001 chrX_5725001 RAL-340_100b 3911 chrX 835612 835612 chrX 5772658 5772658 6 4937046 43.5 53.0 48.2 0.1 4937046 chrX 835612 intron CG43867 - chrX 3304135 intron dnc + chrX 5772658 intron CG42699 + chrX_6_3300001 chrX_3300001 RAL-340_100b 3912 chrX 5786552 5786599 chrX 5786660 5786702 16 107 4.5 4.5 4.5 2.9 150 chrX 5786552 intron CG42699 + chrX 5786627 intron CG42699 + chrX 5786702 intron CG42699 + chrX_16_5785001 chrX_5785001 RAL-340_100b 3913 chrX 5848733 5848785 chrX 5848967 5849019 11 231 2.0 4.0 3.0 2.8 286 chrX 5848733 intergenic not near genes chrX 5848876 intergenic not near genes chrX 5849019 intergenic not near genes chrX_11_5845001 chrX_5845001 RAL-340_100b 3914 chrX 5883793 5883838 chrX 5884054 5884104 pogo 15 266 7.5 9.5 8.5 1.6 311 chrX 5883793 intron CR45668 - chrX 5883948 intron CR45668 - chrX 5884104 intron CR45668 - chrX_15_5880001 chrX_5880001 RAL-340_100b 3915 chrX 5884146 5884154 chrX 5884412 5884420 pogo 4 266 15.5 6.5 11.0 0.3 274 chrX 5884146 intron CR45668 - chrX 5884283 intron CR45668 - chrX 5884420 intron CR45668 - chrX_4_5880001 chrX_5880001 RAL-340_100b 3916 chrX 5884156 5884187 chrX 5884411 5884453 pogo 7 257 9.5 6.5 8.0 0.8 297 chrX 5884156 intron CR45668 - chrX 5884304 intron CR45668 - chrX 5884453 intron CR45668 - chrX_7_5880001 chrX_5880001 RAL-340_100b 3917 chrX 5965874 5965906 chrX 5966284 5966291 4 398 13.5 6.5 10.0 0.4 417 chrX 5965874 intergenic Grip + chrX 5966082 intergenic Grip + chrX 5966291 5` UTR Grip + chrX_4_5965001 chrX_5965001 RAL-340_100b 3918 chrX 6080808 6080828 chrX 6080916 6080937 19 108 45.5 24.0 34.8 0.5 129 chrX 6080808 intron CG4660 - chrX 6080872 intron CG4660 - chrX 6080937 intron CG4660 - chrX_19_6080001 chrX_6080001 RAL-340_100b 3919 chrX 6171564 6171592 chrX 6179021 6179050 Quasimodo 10 7452 8.5 8.5 8.5 1.1 7486 chrX 6171564 intron Ca-alpha1T - chrX 6175307 intron Ca-alpha1T - chrX 6179050 intron Ca-alpha1T - chrX_10_6175001 chrX_6175001 RAL-340_100b 3920 chrX 6171594 6171610 chrX 6179020 6179066 Quasimodo 10 7447 5.5 8.5 7.0 1.2 7472 chrX 6171594 intron Ca-alpha1T - chrX 6175330 intron Ca-alpha1T - chrX 6179066 intron Ca-alpha1T - chrX_10_6175001 chrX_6175001 RAL-340_100b 3921 chrX 6215503 6215520 chrX 6215609 6215626 11 106 35.0 24.5 29.8 0.4 123 chrX 6215503 intergenic not near genes chrX 6215564 intergenic not near genes chrX 6215626 intergenic not near genes chrX_11_6215001 chrX_6215001 RAL-340_100b 3922 chrX 6215522 6215531 chrX 6215628 6215637 5 106 29.0 29.0 29.0 0.2 115 chrX 6215522 intergenic not near genes chrX 6215580 intergenic not near genes chrX 6215637 intergenic not near genes chrX_5_6215001 chrX_6215001 RAL-340_100b 3923 chrX 6263814 6263853 chrX 6263920 6263959 9 103 8.5 3.5 6.0 1.3 145 chrX 6263814 intron schlank - chrX 6263886 intron schlank - chrX 6263959 intron schlank - chrX_9_6260001 chrX_6260001 RAL-340_100b 3924 chrX 6335216 6335220 chrX 6337727 6337755 Tirant 8 2524 2.5 8.0 5.2 1.3 2539 chrX 6335216 intergenic not near genes chrX 6336486 intergenic not near genes chrX 6337755 intergenic CG3842 + chrX_8_6335001 chrX_6335001 RAL-340_100b 3925 chrX 6335222 6335241 chrX 6337721 6337776 Tirant 18 2527 1.0 6.0 3.5 4.0 2554 chrX 6335222 intergenic not near genes chrX 6336499 intergenic not near genes chrX 6337776 5` UTR CG3842 + chrX_18_6335001 chrX_6335001 RAL-340_100b 3926 chrX 6341994 6341999 chrX 6342103 6342108 5 109 24.0 4.5 14.2 0.3 114 chrX 6341994 intron CG3842 + chrX 6342051 intron CG3842 + chrX 6342108 5` UTR CG3842 + chrX_5_6340001 chrX_6340001 RAL-340_100b 3927 chrX 6388641 6388681 chrX 6388742 6388782 14 98 6.0 6.0 6.0 2.0 141 chrX 6388641 intergenic not near genes chrX 6388712 intergenic not near genes chrX 6388782 intergenic not near genes chrX_14_6385001 chrX_6385001 RAL-340_100b 3928 chrX 6392855 6392898 chrX 6397638 6397688 Doc 15 4780 4.5 6.0 5.2 2.4 4833 chrX 6392855 intergenic not near genes chrX 6395272 intergenic not near genes chrX 6397688 intergenic not near genes chrX_15_6395001 chrX_6395001 RAL-340_100b 3929 chrX 6436554 6436567 chrX 6436661 6436670 4 105 32.5 16.0 24.2 0.2 116 chrX 6436554 intron CG42340 - chrX 6436612 intron CG42340 - chrX 6436670 intron CG42340 - chrX_4_6435001 chrX_6435001 RAL-340_100b 3930 chrX 6445321 6445336 chrX 6451104 6451108 297 7 5780 7.5 18.5 13.0 0.5 5787 chrX 6445321 intron CG42340 - chrX 6448214 intron CG42340 - chrX 6451108 intron CG42340 - chrX_7_6445001 chrX_6445001 RAL-340_100b 3931 chrX 6494544 6494588 chrX 6494690 6494735 12 143 6.5 7.5 7.0 1.5 191 chrX 6494544 intron CG42340 - chrX 6494640 intron CG42340 - chrX 6494735 intron CG42340 - chrX_12_6490001 chrX_6490001 RAL-340_100b 3932 chrX 6514090 6514119 chrX 6514213 6514242 14 122 7.0 8.0 7.5 1.6 152 chrX 6514090 intron CG42340 - chrX 6514166 intron CG42340 - chrX 6514242 intron CG42340 - chrX_14_6510001 chrX_6510001 RAL-340_100b 3933 chrX 6562797 6562808 chrX 6571304 6571315 Tirant 6 8507 14.5 8.5 11.5 0.5 8518 chrX 6562797 intron CG34417 + chrX 6567056 intron CG34417 + chrX 6571315 intron CG34417 + chrX_6_6565001 chrX_6565001 RAL-340_100b 3934 chrX 6562811 6562848 chrX 6571303 6571338 Tirant 16 8501 7.0 7.5 7.2 2.0 8527 chrX 6562811 intron CG34417 + chrX 6567074 intron CG34417 + chrX 6571338 intron CG34417 + chrX_16_6565001 chrX_6565001 RAL-340_100b 3935 chrX 6591836 6591856 chrX 6591946 6591966 6 110 7.0 1.0 4.0 1.2 130 chrX 6591836 intron Pat1 + chrX 6591901 intron Pat1 + chrX 6591966 intron Pat1 + chrX_6_6590001 chrX_6590001 RAL-340_100b 3936 chrX 6605464 6605504 chrX 6608505 6608551 Burdock 11 3041 13.0 10.5 11.8 0.9 3087 chrX 6605464 intron pigs + chrX 6607008 intron pigs + chrX 6608551 intron pigs + chrX_11_6605001 chrX_6605001 RAL-340_100b 3937 chrX 6618442 6618474 chrX 6618545 6618577 9 100 24.0 25.0 24.5 0.4 135 chrX 6618442 intron pigs + chrX 6618510 intron pigs + chrX 6618577 intron pigs + chrX_9_6615001 chrX_6615001 RAL-340_100b 3938 chrX 6629766 6629793 chrX 6629878 6629905 12 110 6.0 6.0 6.0 1.7 139 chrX 6629766 intron pigs + chrX 6629836 intron pigs + chrX 6629905 intron pigs + chrX_12_6625001 chrX_6625001 RAL-340_100b 3939 chrX 6733656 6733670 chrX 6733769 6733784 8 113 16.0 26.0 21.0 0.4 128 chrX 6733656 intron,intron CG3168 -,CR43461 + chrX 6733720 intron,intron CG3168 -,CR43461 + chrX 6733784 intron,intron CG3168 -,CR43461 + chrX_8_6730001 chrX_6730001 RAL-340_100b 3940 chrX 6792063 6792090 chrX 6792174 6792201 9 110 10.5 19.5 15.0 0.6 138 chrX 6792063 intron C3G - chrX 6792132 intron C3G - chrX 6792201 intron C3G - chrX_9_6790001 chrX_6790001 RAL-340_100b 3941 chrX 6814257 6814265 chrX 6814363 6814377 5 110 7.0 0.0 3.5 1.1 120 chrX 6814257 intron iav + chrX 6814317 intron iav + chrX 6814377 intron iav + chrX_5_6810001 chrX_6810001 RAL-340_100b 3942 chrX 6865772 6865795 chrX 6865877 6865904 6 104 11.5 15.0 13.2 0.4 132 chrX 6865772 intron CG14434 - chrX 6865838 intron CG14434 - chrX 6865904 intron CG14434 - chrX_6_6865001 chrX_6865001 RAL-340_100b 3943 chrX 6895879 6895884 chrX 6896194 6896202 5 319 3.5 2.0 2.8 1.3 323 chrX 6895879 intergenic not near genes chrX 6896040 intergenic not near genes chrX 6896202 intergenic not near genes chrX_5_6895001 chrX_6895001 RAL-340_100b 3944 chrX 6897653 6897701 chrX 6897787 6897836 7 135 0.5 5.0 2.8 1.8 183 chrX 6897653 intergenic not near genes chrX 6897744 intergenic not near genes chrX 6897836 intergenic not near genes chrX_7_6895001 chrX_6895001 RAL-340_100b 3945 chrX 6901355 6901385 chrX 6901456 6901466 10 97 9.5 11.5 10.5 0.9 111 chrX 6901355 intergenic not near genes chrX 6901410 intergenic not near genes chrX 6901466 intergenic not near genes chrX_10_6900001 chrX_6900001 RAL-340_100b 3946 chrX 6969892 6969947 chrX 6970021 6970070 12 136 62.0 62.5 62.2 0.2 178 chrX 6969892 intergenic CG4586 + chrX 6969981 5` UTR CG4586 + chrX 6970070 exon CG4586 + chrX_12_6965001 chrX_6965001 RAL-340_100b 3947 chrX 6989487 6989532 chrX 6989593 6989634 11 105 5.5 6.5 6.0 1.6 147 chrX 6989487 intron ogre - chrX 6989560 intron ogre - chrX 6989634 intron ogre - chrX_11_6985001 chrX_6985001 RAL-340_100b 3948 chrX 7023580 7023586 chrX 7030995 7031001 Tabor 5 7415 15.0 9.0 12.0 0.4 7421 chrX 7023580 intron CG12541 - chrX 7027290 intron CG12541 - chrX 7031001 intron CG12541 - chrX_5_7025001 chrX_7025001 RAL-340_100b 3949 chrX 7023587 7023633 chrX 7030992 7031017 Tabor 37 7409 2.0 9.0 5.5 5.7 7430 chrX 7023587 intron CG12541 - chrX 7027302 intron CG12541 - chrX 7031017 intron CG12541 - chrX_37_7025001 chrX_7025001 RAL-340_100b 3950 chrX 7047467 7047512 chrX 7047583 7047610 9 106 5.5 6.5 6.0 1.3 143 chrX 7047467 intron CG12541 - chrX 7047538 intron CG12541 - chrX 7047610 intron CG12541 - chrX_9_7045001 chrX_7045001 RAL-340_100b 3951 chrX 7125223 7125272 chrX 7134407 7134456 roo 23 9183 2.5 6.5 4.5 4.2 9233 chrX 7125223 intergenic not near genes chrX 7129840 intergenic not near genes chrX 7134456 intergenic not near genes chrX_23_7125001 chrX_7125001 RAL-340_100b 3952 chrX 7235534 7235539 chrX 7235646 7235651 4 112 9.0 18.5 13.8 0.3 117 chrX 7235534 intron,intron CG9650 +,CR44357 - chrX 7235592 intron,intron CG9650 +,CR44357 - chrX 7235651 intron,intron CG9650 +,CR44357 - chrX_4_7235001 chrX_7235001 RAL-340_100b 3953 chrX 7293782 7293782 chrX 13057297 13057302 10 5763519 29.5 42.5 36.0 0.3 5763520 chrX 7293782 intron,intron CR44357 -,CG1677 - chrX 10175542 intron,intron CR44894 -,CG43902 + chrX 13057302 intron rad + chrX_10_10175001 chrX_10175001 RAL-340_100b 3954 chrX 7322881 7322894 chrX 7322990 7323003 4 108 13.0 6.5 9.8 0.4 122 chrX 7322881 intron,intron,intron CR44357 -,CG1677 -,Atg5 - chrX 7322942 intron,intron,intron CR44357 -,CG1677 -,Atg5 - chrX 7323003 intron,intron,intron CR44357 -,CG1677 -,Atg5 - chrX_4_7320001 chrX_7320001 RAL-340_100b 3955 chrX 7322895 7322931 chrX 7322981 7323013 13 102 4.5 4.5 4.5 2.4 118 chrX 7322895 intron,intron,intron CR44357 -,CG1677 -,Atg5 - chrX 7322954 intron,intron,intron CR44357 -,CG1677 -,Atg5 - chrX 7323013 intron,intron,intron CR44357 -,CG1677 -,Atg5 - chrX_13_7320001 chrX_7320001 RAL-340_100b 3956 chrX 7381142 7381192 chrX 7381249 7381297 20 103 8.5 4.0 6.2 2.8 155 chrX 7381142 intron,intron CR44357 -,CG1677 - chrX 7381220 intron,intron CR44357 -,CG1677 - chrX 7381297 intron,intron CR44357 -,CG1677 - chrX_20_7380001 chrX_7380001 RAL-340_100b 3957 chrX 7702510 7702526 chrX 7702605 7702628 16 107 1.5 32.5 17.0 0.9 118 chrX 7702510 intron CHES-1-like - chrX 7702569 intron CHES-1-like - chrX 7702628 intron CHES-1-like - chrX_16_7700001 chrX_7700001 RAL-340_100b 3958 chrX 7702891 7702932 chrX 7703350 7703356 jockey 14 461 13.5 8.0 10.8 1.2 465 chrX 7702891 intron CHES-1-like - chrX 7703124 intron CHES-1-like - chrX 7703356 intron CHES-1-like - chrX_14_7700001 chrX_7700001 RAL-340_100b 3959 chrX 7737138 7737165 chrX 7737244 7737261 10 102 15.0 3.0 9.0 1.0 123 chrX 7737138 5` UTR Tom40 + chrX 7737200 intron Tom40 + chrX 7737261 intron Tom40 + chrX_10_7735001 chrX_7735001 RAL-340_100b 3960 chrX 7832411 7832464 chrX 7832525 7832578 10 114 13.5 9.0 11.2 0.8 167 chrX 7832411 intron CG1402 + chrX 7832494 intron CG1402 + chrX 7832578 intron CG1402 + chrX_10_7830001 chrX_7830001 RAL-340_100b 3961 chrX 7845708 7845756 chrX 7847217 7847272 hopper2 11 1513 6.5 5.5 6.0 1.6 1564 chrX 7845708 intergenic not near genes chrX 7846490 intergenic not near genes chrX 7847272 intergenic not near genes chrX_11_7845001 chrX_7845001 RAL-340_100b 3962 chrX 7995775 7995778 chrX 9845361 9845361 6 1849586 26.0 114.0 70.0 0.1 1849586 chrX 7995775 5` UTR Tbh + chrX 8920568 intron rdgA + chrX 9845361 intron CG32698 + chrX_6_8920001 chrX_8920001 RAL-340_100b 3963 chrX 8013215 8013242 chrX 8013352 8013379 5 137 14.0 3.5 8.8 0.5 164 chrX 8013215 intron Tbh + chrX 8013297 intron Tbh + chrX 8013379 intron Tbh + chrX_5_8010001 chrX_8010001 RAL-340_100b 3964 chrX 8013249 8013265 chrX 8013386 8013401 7 135 12.0 13.5 12.8 0.5 152 chrX 8013249 intron Tbh + chrX 8013325 intron Tbh + chrX 8013401 intron Tbh + chrX_7_8010001 chrX_8010001 RAL-340_100b 3965 chrX 8024636 8024669 chrX 8024736 8024754 4 91 19.0 23.0 21.0 0.2 118 chrX 8024636 intron Tbh + chrX 8024695 intron Tbh + chrX 8024754 intron Tbh + chrX_4_8020001 chrX_8020001 RAL-340_100b 3966 chrX 8031431 8031449 chrX 8035732 8035777 Juan 10 4327 7.5 3.0 5.2 1.6 4346 chrX 8031431 intergenic not near genes chrX 8033604 intergenic not near genes chrX 8035777 3` UTR CG2233 - chrX_10_8030001 chrX_8030001 RAL-340_100b 3967 chrX 8063713 8063767 chrX 8063837 8063889 17 117 6.5 7.5 7.0 2.1 176 chrX 8063713 intron mys + chrX 8063801 intron mys + chrX 8063889 5` UTR mys + chrX_17_8060001 chrX_8060001 RAL-340_100b 3968 chrX 8066557 8066602 chrX 8066664 8066715 9 111 2.0 1.5 1.8 3.2 158 chrX 8066557 intron mys + chrX 8066636 intron mys + chrX 8066715 intron mys + chrX_9_8065001 chrX_8065001 RAL-340_100b 3969 chrX 8069553 8069585 chrX 8069664 8069697 7 109 3.5 5.5 4.5 1.3 144 chrX 8069553 3` UTR mys + chrX 8069625 3` UTR mys + chrX 8069697 3` UTR mys + chrX_7_8065001 chrX_8065001 RAL-340_100b 3970 chrX 8092266 8092319 chrX 8092376 8092429 40 108 9.5 6.5 8.0 4.4 163 chrX 8092266 intron Ubc-E2H - chrX 8092348 intron Ubc-E2H - chrX 8092429 intron Ubc-E2H - chrX_40_8090001 chrX_8090001 RAL-340_100b 3971 chrX 8214379 8214434 chrX 8214496 8214551 25 113 10.5 2.5 6.5 3.3 172 chrX 8214379 intron sdt + chrX 8214465 intron sdt + chrX 8214551 intron sdt + chrX_25_8210001 chrX_8210001 RAL-340_100b 3972 chrX 8311514 8311548 chrX 8311619 8311653 18 102 6.5 6.5 6.5 2.4 139 chrX 8311514 intron nAChRalpha3 - chrX 8311584 intron nAChRalpha3 - chrX 8311653 intron nAChRalpha3 - chrX_18_8310001 chrX_8310001 RAL-340_100b 3973 chrX 8364836 8364842 chrX 8365258 8365262 BS 6 422 6.0 11.0 8.5 0.6 426 chrX 8364836 intron nAChRalpha3 - chrX 8365049 intron nAChRalpha3 - chrX 8365262 intron nAChRalpha3 - chrX_6_8365001 chrX_8365001 RAL-340_100b 3974 chrX 8364859 8364863 chrX 8365243 8365276 BS 4 410 3.5 7.0 5.2 0.6 417 chrX 8364859 intron nAChRalpha3 - chrX 8365068 intron nAChRalpha3 - chrX 8365276 intron nAChRalpha3 - chrX_4_8365001 chrX_8365001 RAL-340_100b 3975 chrX 8392547 8392584 chrX 8392648 8392686 17 96 13.0 20.0 16.5 1.0 139 chrX 8392547 intergenic not near genes chrX 8392616 intergenic not near genes chrX 8392686 intergenic not near genes chrX_17_8390001 chrX_8390001 RAL-340_100b 3976 chrX 8513067 8513125 chrX 8513359 8513417 67 289 18.5 25.5 22.0 2.9 350 chrX 8513067 intron CG33181 + chrX 8513242 intron CG33181 + chrX 8513417 intron CG33181 + chrX_67_8510001 chrX_8510001 RAL-340_100b 3977 chrX 8553875 8553914 chrX 8553973 8553989 33 98 16.5 11.0 13.8 2.2 114 chrX 8553875 3` UTR Nrg + chrX 8553932 3` UTR Nrg + chrX 8553989 3` UTR Nrg + chrX_33_8550001 chrX_8550001 RAL-340_100b 3978 chrX 8605289 8605344 chrX 8605391 8605446 32 99 8.5 8.0 8.2 3.5 157 chrX 8605289 exon Caf1-180 - chrX 8605368 exon Caf1-180 - chrX 8605446 exon Caf1-180 - chrX_32_8605001 chrX_8605001 RAL-340_100b 3979 chrX 8606519 8606533 chrX 8606620 8606629 5 100 8.0 13.0 10.5 0.4 110 chrX 8606519 intergenic Caf1-180 - chrX 8606574 intergenic Caf1-180 - chrX 8606629 intergenic Caf1-180 - chrX_5_8605001 chrX_8605001 RAL-340_100b 3980 chrX 8730454 8730464 chrX 8730539 8730565 4 97 0.0 9.5 4.8 0.7 111 chrX 8730454 intergenic not near genes chrX 8730510 intergenic not near genes chrX 8730565 intergenic not near genes chrX_4_8730001 chrX_8730001 RAL-340_100b 3981 chrX 8743246 8743261 chrX 8743349 8743356 6 102 2.5 5.0 3.8 1.2 110 chrX 8743246 intergenic not near genes chrX 8743301 intergenic not near genes chrX 8743356 intergenic not near genes chrX_6_8740001 chrX_8740001 RAL-340_100b 3982 chrX 8772227 8772252 chrX 8772330 8772356 7 104 11.5 15.0 13.2 0.5 129 chrX 8772227 intron Lim1 - chrX 8772292 intron Lim1 - chrX 8772356 intron Lim1 - chrX_7_8770001 chrX_8770001 RAL-340_100b 3983 chrX 8922312 8922352 chrX 8922771 8922811 jockey 21 457 9.5 5.5 7.5 2.5 499 chrX 8922312 intron rdgA + chrX 8922562 intron rdgA + chrX 8922811 intron rdgA + chrX_21_8920001 chrX_8920001 RAL-340_100b 3984 chrX 8948743 8948784 chrX 8956278 8956319 roo 16 7531 2.5 7.0 4.8 2.8 7576 chrX 8948743 intron rdgA + chrX 8952531 intron rdgA + chrX 8956319 intron rdgA + chrX_16_8950001 chrX_8950001 RAL-340_100b 3985 chrX 9218059 9218076 chrX 9218170 9218172 7 112 13.5 3.0 8.2 0.8 113 chrX 9218059 3` UTR t - chrX 9218116 3` UTR t - chrX 9218172 3` UTR t - chrX_7_9215001 chrX_9215001 RAL-340_100b 3986 chrX 9289691 9289709 chrX 9289799 9289817 9 108 6.0 20.0 13.0 0.6 126 chrX 9289691 intron lz + chrX 9289754 intron lz + chrX 9289817 intron lz + chrX_9_9285001 chrX_9285001 RAL-340_100b 3987 chrX 9337917 9337930 chrX 9338034 9338047 11 116 34.0 19.0 26.5 0.4 130 chrX 9337917 intron CG34449 - chrX 9337982 intron CG34449 - chrX 9338047 intron CG34449 - chrX_11_9335001 chrX_9335001 RAL-340_100b 3988 chrX 9337931 9337973 chrX 9338033 9338059 56 113 17.0 19.0 18.0 2.9 128 chrX 9337931 intron CG34449 - chrX 9337995 intron CG34449 - chrX 9338059 exon CG34449 - chrX_56_9335001 chrX_9335001 RAL-340_100b 3989 chrX 9401992 9402013 chrX 9402100 9402122 12 105 20.5 11.5 16.0 0.7 130 chrX 9401992 intron mgl - chrX 9402057 intron mgl - chrX 9402122 intron mgl - chrX_12_9400001 chrX_9400001 RAL-340_100b 3990 chrX 9508123 9508135 chrX 9509666 9509678 jockey 5 1543 26.0 14.5 20.2 0.2 1555 chrX 9508123 intron CG32700 - chrX 9508900 intron CG32700 - chrX 9509678 intron CG32700 - chrX_5_9505001 chrX_9505001 RAL-340_100b 3991 chrX 9508141 9508171 chrX 9509648 9509654 jockey 17 1532 12.0 7.0 9.5 1.6 1513 chrX 9508141 intron CG32700 - chrX 9508898 intron CG32700 - chrX 9509654 intron CG32700 - chrX_17_9505001 chrX_9505001 RAL-340_100b 3992 chrX 9531634 9531673 chrX 9531738 9531778 8 105 11.5 2.0 6.8 1.0 144 chrX 9531634 intron CG32700 - chrX 9531706 intron CG32700 - chrX 9531778 intron CG32700 - chrX_8_9530001 chrX_9530001 RAL-340_100b 3993 chrX 9575782 9575818 chrX 9576120 9576167 mdg3 18 342 6.0 6.0 6.0 2.6 385 chrX 9575782 intron,exon CG32699 -,CG42395 - chrX 9575974 intron,intron CG32699 -,CG42395 - chrX 9576167 intron,5` UTR CG32699 -,CG42395 - chrX_18_9575001 chrX_9575001 RAL-340_100b 3994 chrX 9758025 9758037 chrX 9758135 9758141 6 109 25.0 1.0 13.0 0.4 116 chrX 9758025 intergenic not near genes chrX 9758083 intergenic not near genes chrX 9758141 intergenic not near genes chrX_6_9755001 chrX_9755001 RAL-340_100b 3995 chrX 9758040 9758069 chrX 9758133 9758179 9 104 12.5 0.0 6.2 1.2 139 chrX 9758040 intergenic not near genes chrX 9758110 intergenic not near genes chrX 9758179 intergenic not near genes chrX_9_9755001 chrX_9755001 RAL-340_100b 3996 chrX 9762196 9762199 chrX 9762294 9762316 7 114 0.0 12.5 6.2 1.0 120 chrX 9762196 intergenic not near genes chrX 9762256 intergenic not near genes chrX 9762316 intergenic not near genes chrX_7_9760001 chrX_9760001 RAL-340_100b 3997 chrX 9791849 9791854 chrX 9791971 9791976 5 122 8.0 5.0 6.5 0.7 127 chrX 9791849 intron CG32698 + chrX 9791912 intron CG32698 + chrX 9791976 intron CG32698 + chrX_5_9790001 chrX_9790001 RAL-340_100b 3998 chrX 9791856 9791864 chrX 9791969 9791980 5 118 6.0 5.0 5.5 0.8 124 chrX 9791856 intron CG32698 + chrX 9791918 intron CG32698 + chrX 9791980 intron CG32698 + chrX_5_9790001 chrX_9790001 RAL-340_100b 3999 chrX 9791869 9791893 chrX 9791965 9792008 9 112 3.5 4.5 4.0 1.8 139 chrX 9791869 intron CG32698 + chrX 9791938 intron CG32698 + chrX 9792008 intron CG32698 + chrX_9_9790001 chrX_9790001 RAL-340_100b 4000 chrX 9837811 9837863 chrX 9839729 9839767 4 1908 46.5 51.0 48.8 0.1 1956 chrX 9837811 intron CG32698 + chrX 9838789 intron CG32698 + chrX 9839767 intron CG32698 + chrX_4_9835001 chrX_9835001 RAL-340_100b 4001 chrX 3288105 3288108 chrX 9845361 9845361 Tirant 5 6557254 45.5 114.0 79.8 0.1 6557256 chrX 3288105 intron dnc + chrX 6566733 intron CG34417 + chrX 9845361 intron CG32698 + chrX_5_6565001 chrX_6565001 RAL-340_100b 4002 chrX 7995775 7995775 chrX 9845361 9845361 5 1849586 27.0 114.0 70.5 0.1 1849586 chrX 7995775 5` UTR Tbh + chrX 8920568 intron rdgA + chrX 9845361 intron CG32698 + chrX_5_8920001 chrX_8920001 RAL-340_100b 4003 chrX 9845361 9845361 chrX 12946233 12946235 11 3100874 93.0 31.5 62.2 0.2 3100874 chrX 9845361 intron CG32698 + chrX 11395798 intron dlg1 + chrX 12946235 3` UTR fne + chrX_11_11395001 chrX_11395001 RAL-340_100b 4004 chrX 9845361 9845361 chrX 14544906 14544942 18 4699548 93.0 29.0 61.0 0.3 4699581 chrX 9845361 intron CG32698 + chrX 12195152 intron Ten-a + chrX 14544942 intergenic not near genes chrX_18_12195001 chrX_12195001 RAL-340_100b 4005 chrX 10138191 10138246 chrX 10145720 10145775 412 14 7527 6.0 12.0 9.0 1.4 7584 chrX 10138191 intron,intron RhoU +,CR44894 - chrX 10141983 intron,intron RhoU +,CR44894 - chrX 10145775 intron,intron RhoU +,CR44894 - chrX_14_10140001 chrX_10140001 RAL-340_100b 4006 chrX 10151911 10151933 chrX 10152013 10152014 5 95 15.5 11.5 13.5 0.3 103 chrX 10151911 intron CR44894 - chrX 10151962 intron CR44894 - chrX 10152014 intron CR44894 - chrX_5_10150001 chrX_10150001 RAL-340_100b 4007 chrX 10154259 10154310 chrX 10154360 10154407 23 94 3.0 5.5 4.2 4.4 148 chrX 10154259 intron,intron CR44894 -,CG12645 + chrX 10154333 intron,intron CR44894 -,CG12645 + chrX 10154407 intron,exon CR44894 -,CG12645 + chrX_23_10150001 chrX_10150001 RAL-340_100b 4008 chrX 10216819 10216852 chrX 10216925 10216949 23 100 28.5 24.0 26.2 0.8 130 chrX 10216819 3` UTR l(1)G0230 + chrX 10216884 3` UTR l(1)G0230 + chrX 10216949 3` UTR l(1)G0230 + chrX_23_10215001 chrX_10215001 RAL-340_100b 4009 chrX 10267297 10267318 chrX 10276461 10276465 roo 4 9162 0.5 3.5 2.0 1.3 9168 chrX 10267297 3` UTR alpha-Man-I - chrX 10271881 intron alpha-Man-I - chrX 10276465 3` UTR alpha-Man-I - chrX_4_10270001 chrX_10270001 RAL-340_100b 4010 chrX 10317531 10317577 chrX 10317634 10317680 15 103 1.0 3.0 2.0 5.0 149 chrX 10317531 intron alpha-Man-I - chrX 10317606 intron alpha-Man-I - chrX 10317680 intron alpha-Man-I - chrX_15_10315001 chrX_10315001 RAL-340_100b 4011 chrX 10348779 10348817 chrX 10356369 10356407 springer 8 7587 14.0 12.0 13.0 0.6 7628 chrX 10348779 intergenic snoRNA:U3:9B + chrX 10352593 intergenic not near genes chrX 10356407 intergenic l(1)G0289 - chrX_8_10350001 chrX_10350001 RAL-340_100b 4012 chrX 10446662 10446712 chrX 10446769 10446783 23 103 7.0 7.5 7.2 2.8 121 chrX 10446662 intron CG32683 - chrX 10446722 intron CG32683 - chrX 10446783 intron CG32683 - chrX_23_10445001 chrX_10445001 RAL-340_100b 4013 chrX 10453049 10453102 chrX 10453265 10453318 9 215 3.5 7.0 5.2 1.5 269 chrX 10453049 intron CG32683 - chrX 10453184 intron CG32683 - chrX 10453318 intron CG32683 - chrX_9_10450001 chrX_10450001 RAL-340_100b 4014 chrX 10506488 10506526 chrX 10506592 10506638 17 107 4.5 10.5 7.5 2.0 150 chrX 10506488 intron spri - chrX 10506563 intron spri - chrX 10506638 intron spri - chrX_17_10505001 chrX_10505001 RAL-340_100b 4015 chrX 10550307 10550364 chrX 10550410 10550467 32 100 7.0 9.5 8.2 3.5 160 chrX 10550307 intron spri - chrX 10550387 intron spri - chrX 10550467 intron spri - chrX_32_10550001 chrX_10550001 RAL-340_100b 4016 chrX 10550832 10550888 chrX 10552323 10552375 hobo 25 1487 5.0 11.0 8.0 2.8 1543 chrX 10550832 intron spri - chrX 10551604 intron spri - chrX 10552375 intron spri - chrX_25_10550001 chrX_10550001 RAL-340_100b 4017 chrX 4617441 4617445 chrX 10567409 10567443 4 5949992 28.5 28.0 28.2 0.1 5950002 chrX 4617441 intergenic peb + chrX 7592442 intergenic not near genes chrX 10567443 intron spri - chrX_4_7590001 chrX_7590001 RAL-340_100b 4018 chrX 10663266 10663267 chrX 10663726 10663735 4 464 8.0 13.0 10.5 0.3 469 chrX 10663266 intron X11Lbeta + chrX 10663500 intron X11Lbeta + chrX 10663735 intron X11Lbeta + chrX_4_10660001 chrX_10660001 RAL-340_100b 4019 chrX 10686036 10686078 chrX 10691198 10691240 roo 14 5161 5.0 5.0 5.0 2.3 5204 chrX 10686036 intron X11Lbeta + chrX 10688638 intron X11Lbeta + chrX 10691240 intron X11Lbeta + chrX_14_10685001 chrX_10685001 RAL-340_100b 4020 chrX 10772650 10772697 chrX 10772758 10772794 Tirant 20 101 9.0 5.0 7.0 2.5 144 chrX 10772650 intron CG15211 + chrX 10772722 intron CG15211 + chrX 10772794 intron CG15211 + chrX_20_10770001 chrX_10770001 RAL-340_100b 4021 chrX 10803011 10803045 chrX 10803121 10803150 21 108 14.5 19.0 16.8 1.2 139 chrX 10803011 intron Imp - chrX 10803080 intron Imp - chrX 10803150 intron Imp - chrX_21_10800001 chrX_10800001 RAL-340_100b 4022 chrX 11088553 11088576 chrX 11088669 11088692 12 114 24.0 7.5 15.8 0.7 139 chrX 11088553 intergenic not near genes chrX 11088622 intergenic not near genes chrX 11088692 intergenic not near genes chrX_12_11085001 chrX_11085001 RAL-340_100b 4023 chrX 11088580 11088600 chrX 11088662 11088716 6 110 17.0 7.0 12.0 0.5 136 chrX 11088580 intergenic not near genes chrX 11088648 intergenic not near genes chrX 11088716 intergenic not near genes chrX_6_11085001 chrX_11085001 RAL-340_100b 4024 chrX 11095989 11096028 chrX 11103098 11103155 HMS-Beagle 10 7125 2.0 10.0 6.0 1.4 7166 chrX 11095989 intergenic not near genes chrX 11099572 intergenic not near genes chrX 11103155 intron CG42249 + chrX_10_11095001 chrX_11095001 RAL-340_100b 4025 chrX 11109417 11109417 chrX 12946233 12946235 16 1836817 24.5 31.5 28.0 0.6 1836818 chrX 11109417 intron Hsp60 + chrX 12027826 exon Usp7 - chrX 12946235 3` UTR fne + chrX_16_12025001 chrX_12025001 RAL-340_100b 4026 chrX 11165886 11165902 chrX 11166243 11166248 8 356 6.5 10.0 8.2 0.9 362 chrX 11165886 intergenic not near genes chrX 11166067 intergenic not near genes chrX 11166248 intergenic not near genes chrX_8_11165001 chrX_11165001 RAL-340_100b 4027 chrX 11184226 11184273 chrX 11189327 11189374 flea 8 5098 6.0 10.5 8.2 0.9 5148 chrX 11184226 intergenic not near genes chrX 11186800 intergenic not near genes chrX 11189374 intergenic not near genes chrX_8_11185001 chrX_11185001 RAL-340_100b 4028 chrX 11298594 11298622 chrX 11298696 11298724 12 101 14.5 10.0 12.2 0.9 130 chrX 11298594 intron CG44422 - chrX 11298659 intron CG44422 - chrX 11298724 intron CG44422 - chrX_12_11295001 chrX_11295001 RAL-340_100b 4029 chrX 11298624 11298639 chrX 11298694 11298741 11 97 9.5 9.0 9.2 1.1 117 chrX 11298624 intron CG44422 - chrX 11298682 intron CG44422 - chrX 11298741 intron CG44422 - chrX_11_11295001 chrX_11295001 RAL-340_100b 4030 chrX 11312038 11312065 chrX 11319416 11319436 Stalker2 5 7371 11.0 12.5 11.8 0.4 7398 chrX 11312038 intergenic not near genes chrX 11315737 intergenic not near genes chrX 11319436 intergenic not near genes chrX_5_11315001 chrX_11315001 RAL-340_100b 4031 chrX 11312069 11312087 chrX 11319412 11319465 Stalker2 7 7368 6.5 11.5 9.0 0.7 7396 chrX 11312069 intergenic not near genes chrX 11315767 intergenic not near genes chrX 11319465 intergenic not near genes chrX_7_11315001 chrX_11315001 RAL-340_100b 4032 chrX 11471840 11471885 chrX 11472619 11472664 21 782 37.5 50.0 43.8 0.5 824 chrX 11471840 intron CG43155 + chrX 11472252 intron CG43155 + chrX 11472664 intron CG43155 + chrX_21_11470001 chrX_11470001 RAL-340_100b 4033 chrX 11535024 11535037 chrX 11541519 11541532 Burdock 4 6495 18.5 10.5 14.5 0.3 6508 chrX 11535024 intron Drak + chrX 11538278 intron Drak + chrX 11541532 intron Drak + chrX_4_11535001 chrX_11535001 RAL-340_100b 4034 chrX 11571430 11571458 chrX 11571695 11571724 pogo 28 265 20.5 19.5 20.0 1.3 294 chrX 11571430 3` UTR Kmn1 - chrX 11571577 3` UTR Kmn1 - chrX 11571724 3` UTR Kmn1 - chrX_28_11570001 chrX_11570001 RAL-340_100b 4035 chrX 11571459 11571485 chrX 11571693 11571751 pogo 24 263 9.5 18.5 14.0 1.6 292 chrX 11571459 3` UTR Kmn1 - chrX 11571605 3` UTR Kmn1 - chrX 11571751 3` UTR Kmn1 - chrX_24_11570001 chrX_11570001 RAL-340_100b 4036 chrX 11568174 11568175 chrX 11573272 11573317 23 5103 24.5 48.5 36.5 0.6 5143 chrX 11568174 exon RpII215 - chrX 11570746 3` UTR,exon CR44266 -,CG11699 + chrX 11573317 exon CG11697 + chrX_23_11570001 chrX_11570001 RAL-340_100b 4037 chrX 11568173 11568232 chrX 11573318 11573326 4 5128 38.5 42.5 40.5 0.1 5153 chrX 11568173 exon RpII215 - chrX 11570750 3` UTR,exon CR44266 -,CG11699 + chrX 11573326 exon CG11697 + chrX_4_11570001 chrX_11570001 RAL-340_100b 4038 chrX 11633393 11633448 chrX 11640472 11640517 297 27 7072 4.5 15.0 9.8 2.5 7124 chrX 11633393 intron Ptp10D + chrX 11636955 intron Ptp10D + chrX 11640517 intron Ptp10D + chrX_27_11635001 chrX_11635001 RAL-340_100b 4039 chrX 11651176 11651220 chrX 11651287 11651335 17 113 7.5 4.0 5.8 2.5 159 chrX 11651176 intron Ptp10D + chrX 11651256 intron Ptp10D + chrX 11651335 intron Ptp10D + chrX_17_11650001 chrX_11650001 RAL-340_100b 4040 chrX 11684844 11684898 chrX 11684995 11685044 15 149 7.5 1.0 4.2 2.9 200 chrX 11684844 intron bif + chrX 11684944 intron bif + chrX 11685044 intron bif + chrX_15_11680001 chrX_11680001 RAL-340_100b 4041 chrX 11719849 11719854 chrX 11719954 11719959 6 104 50.5 9.5 30.0 0.2 110 chrX 11719849 3` UTR prtp + chrX 11719904 intergenic prtp +,Tango10 + chrX 11719959 intergenic prtp +,Tango10 + chrX_6_11715001 chrX_11715001 RAL-340_100b 4042 chrX 11719855 11719902 chrX 11719953 11719991 56 102 23.5 8.5 16.0 3.3 136 chrX 11719855 3` UTR prtp + chrX 11719923 intergenic prtp +,Tango10 + chrX 11719991 intergenic prtp +,Tango10 + chrX_56_11715001 chrX_11715001 RAL-340_100b 4043 chrX 11761996 11762006 chrX 11762092 11762110 7 101 6.0 19.5 12.8 0.5 114 chrX 11761996 intron m + chrX 11762053 intron m + chrX 11762110 intron m + chrX_7_11760001 chrX_11760001 RAL-340_100b 4044 chrX 11804651 11804690 chrX 11804780 11804819 6 129 5.0 7.0 6.0 0.9 168 chrX 11804651 intron Hsc70-3 - chrX 11804735 intron Hsc70-3 - chrX 11804819 intron Hsc70-3 - chrX_6_11800001 chrX_11800001 RAL-340_100b 4045 chrX 11822195 11822209 chrX 11822359 11822373 8 163 5.0 13.0 9.0 0.8 178 chrX 11822195 intron rudhira + chrX 11822284 intron rudhira + chrX 11822373 intron rudhira + chrX_8_11820001 chrX_11820001 RAL-340_100b 4046 chrX 11880904 11880921 chrX 11881011 11881028 8 105 10.5 5.5 8.0 0.9 124 chrX 11880904 exon CG10353 - chrX 11880966 intron CG10353 - chrX 11881028 intron CG10353 - chrX_8_11880001 chrX_11880001 RAL-340_100b 4047 chrX 11922344 11922366 chrX 11922500 11922519 5 157 7.0 5.5 6.2 0.7 175 chrX 11922344 exon Sclp - chrX 11922432 intron Sclp - chrX 11922519 intron Sclp - chrX_5_11920001 chrX_11920001 RAL-340_100b 4048 chrX 11922367 11922381 chrX 11922497 11922539 9 153 5.5 5.5 5.5 1.4 172 chrX 11922367 exon Sclp - chrX 11922453 intron Sclp - chrX 11922539 intron Sclp - chrX_9_11920001 chrX_11920001 RAL-340_100b 4049 chrX 11936558 11936583 chrX 11936682 11936697 7 122 0.0 6.5 3.2 1.7 139 chrX 11936558 intron cac - chrX 11936628 intron cac - chrX 11936697 exon cac - chrX_7_11935001 chrX_11935001 RAL-340_100b 4050 chrX 11963005 11963031 chrX 11963108 11963134 12 103 6.5 8.5 7.5 1.4 129 chrX 11963005 intron cac - chrX 11963070 intron cac - chrX 11963134 intron cac - chrX_12_11960001 chrX_11960001 RAL-340_100b 4051 chrX 11963046 11963050 chrX 11963124 11963137 5 92 5.0 10.0 7.5 0.6 91 chrX 11963046 intron cac - chrX 11963092 intron cac - chrX 11963137 intron cac - chrX_5_11960001 chrX_11960001 RAL-340_100b 4052 chrX 12038065 12038118 chrX 12038284 12038318 22 209 3.0 3.0 3.0 5.5 253 chrX 12038065 intergenic not near genes chrX 12038192 intergenic not near genes chrX 12038318 intergenic not near genes chrX_22_12035001 chrX_12035001 RAL-340_100b 4053 chrX 12168119 12168126 chrX 12173582 12173593 I-element 5 5466 23.0 22.0 22.5 0.2 5474 chrX 12168119 intron Ten-a + chrX 12170856 intron Ten-a + chrX 12173593 intron Ten-a + chrX_5_12170001 chrX_12170001 RAL-340_100b 4054 chrX 12168137 12168145 chrX 12173579 12173612 I-element 11 5458 20.0 20.5 20.2 0.5 5475 chrX 12168137 intron Ten-a + chrX 12170874 intron Ten-a + chrX 12173612 intron Ten-a + chrX_11_12170001 chrX_12170001 RAL-340_100b 4055 chrX 12168150 12168168 chrX 12173587 12173594 I-element 10 5450 13.5 25.0 19.2 0.5 5444 chrX 12168150 intron Ten-a + chrX 12170872 intron Ten-a + chrX 12173594 intron Ten-a + chrX_10_12170001 chrX_12170001 RAL-340_100b 4056 chrX 12233594 12233606 chrX 12233677 12233706 9 97 16.0 13.0 14.5 0.6 112 chrX 12233594 intron Ten-a + chrX 12233650 intron Ten-a + chrX 12233706 intron Ten-a + chrX_9_12230001 chrX_12230001 RAL-340_100b 4057 chrX 12246952 12246988 chrX 12247073 12247109 5 121 1.0 1.0 1.0 2.5 157 chrX 12246952 intron Ten-a + chrX 12247030 intron Ten-a + chrX 12247109 intron Ten-a + chrX_5_12245001 chrX_12245001 RAL-340_100b 4058 chrX 12301944 12301965 chrX 12303265 12303296 X-element 12 1329 4.5 2.5 3.5 2.7 1352 chrX 12301944 intron Ten-a + chrX 12302620 intron Ten-a + chrX 12303296 intron Ten-a + chrX_12_12300001 chrX_12300001 RAL-340_100b 4059 chrX 12375465 12375504 chrX 12375588 12375627 13 117 5.5 5.5 5.5 2.0 162 chrX 12375465 intergenic Ir11a - chrX 12375546 intergenic Ir11a - chrX 12375627 exon Ir11a - chrX_13_12375001 chrX_12375001 RAL-340_100b 4060 chrX 12381880 12381903 chrX 12385777 12385790 flea 8 3902 3.5 11.0 7.2 1.0 3910 chrX 12381880 intergenic not near genes chrX 12383835 intergenic not near genes chrX 12385790 intergenic not near genes chrX_8_12380001 chrX_12380001 RAL-340_100b 4061 chrX 12465449 12465487 chrX 12465549 12465553 20 96 22.0 0.0 11.0 1.7 104 chrX 12465449 exon CG42258 + chrX 12465501 intron CG42258 + chrX 12465553 intron CG42258 + chrX_20_12465001 chrX_12465001 RAL-340_100b 4062 chrX 12509889 12509933 chrX 12509991 12510035 16 100 5.5 4.0 4.8 2.8 146 chrX 12509889 intron CG2556 + chrX 12509962 intron CG2556 + chrX 12510035 intron CG2556 + chrX_16_12505001 chrX_12505001 RAL-340_100b 4063 chrX 12511325 12511350 chrX 12511431 12511459 8 109 0.0 10.5 5.2 1.3 134 chrX 12511325 intron CG2556 + chrX 12511392 intron CG2556 + chrX 12511459 intron CG2556 + chrX_8_12510001 chrX_12510001 RAL-340_100b 4064 chrX 12532623 12532650 chrX 12532790 12532799 4 164 11.0 0.0 5.5 0.6 176 chrX 12532623 intron CG43921 - chrX 12532711 intron CG43921 - chrX 12532799 intron CG43921 - chrX_4_12530001 chrX_12530001 RAL-340_100b 4065 chrX 9845361 9845361 chrX 12546482 12546495 gypsy5 6 2701131 93.0 45.0 69.0 0.1 2701134 chrX 9845361 intron CG32698 + chrX 11195928 intergenic not near genes chrX 12546495 intron CG43921 - chrX_6_11195001 chrX_11195001 RAL-340_100b 4066 chrX 9845361 9845361 chrX 12546496 12546496 gypsy5 21 2701135 93.0 47.0 70.0 0.3 2701135 chrX 9845361 intron CG32698 + chrX 11195928 intergenic not near genes chrX 12546496 intron CG43921 - chrX_21_11195001 chrX_11195001 RAL-340_100b 4067 chrX 12557128 12557131 chrX 12557229 12557232 4 101 26.0 15.0 20.5 0.2 104 chrX 12557128 intron CG43921 - chrX 12557180 intron CG43921 - chrX 12557232 intron CG43921 - chrX_4_12555001 chrX_12555001 RAL-340_100b 4068 chrX 12557135 12557165 chrX 12557236 12557242 13 97 18.5 14.5 16.5 0.7 107 chrX 12557135 intron CG43921 - chrX 12557188 intron CG43921 - chrX 12557242 intron CG43921 - chrX_13_12555001 chrX_12555001 RAL-340_100b 4069 chrX 12557455 12557485 chrX 12557555 12557575 10 104 0.5 2.0 1.2 4.5 120 chrX 12557455 intron CG43921 - chrX 12557515 intron CG43921 - chrX 12557575 intron CG43921 - chrX_10_12555001 chrX_12555001 RAL-340_100b 4070 chrX 12635426 12635430 chrX 12635536 12635540 5 110 5.5 3.5 4.5 0.9 114 chrX 12635426 intron Tomosyn + chrX 12635483 intron Tomosyn + chrX 12635540 intron Tomosyn + chrX_5_12635001 chrX_12635001 RAL-340_100b 4071 chrX 4617443 4617447 chrX 12649914 12649914 4 8032470 28.0 109.0 68.5 0.1 8032471 chrX 4617443 intergenic peb + chrX 8633678 exon oc - chrX 12649914 intron Tomosyn + chrX_4_8630001 chrX_8630001 RAL-340_100b 4072 chrX 5190121 5190139 chrX 12649914 12649914 6 7459788 33.0 109.0 71.0 0.1 7459793 chrX 5190121 intron,intron CG15465 +,rg + chrX 8920018 intron,3` UTR rdgA +,CR44111 - chrX 12649914 intron Tomosyn + chrX_6_8920001 chrX_8920001 RAL-340_100b 4073 chrX 4617441 4617443 chrX 12649915 12649915 10 8032473 30.0 109.5 69.8 0.1 8032474 chrX 4617441 intergenic peb + chrX 8633678 exon oc - chrX 12649915 intron Tomosyn + chrX_10_8630001 chrX_8630001 RAL-340_100b 4074 chrX 5190120 5190133 chrX 12649915 12649915 4 7459791 31.0 109.5 70.2 0.1 7459795 chrX 5190120 intron,intron CG15465 +,rg + chrX 8920018 intron,3` UTR rdgA +,CR44111 - chrX 12649915 intron Tomosyn + chrX_4_8920001 chrX_8920001 RAL-340_100b 4075 chrX 8326730 8326755 chrX 12649915 12649915 6 4323171 33.0 109.5 71.2 0.1 4323185 chrX 8326730 intron nAChRalpha3 - chrX 10488322 intergenic not near genes chrX 12649915 intron Tomosyn + chrX_6_10485001 chrX_10485001 RAL-340_100b 4076 chrX 12825733 12825740 chrX 12825834 12825841 4 101 15.5 6.5 11.0 0.3 108 chrX 12825733 intron Pde9 - chrX 12825787 intron Pde9 - chrX 12825841 intron Pde9 - chrX_4_12825001 chrX_12825001 RAL-340_100b 4077 chrX 12825744 12825789 chrX 12825831 12825868 11 93 6.5 6.0 6.2 1.5 124 chrX 12825744 intron Pde9 - chrX 12825806 intron Pde9 - chrX 12825868 intron Pde9 - chrX_11_12825001 chrX_12825001 RAL-340_100b 4078 chrX 12930592 12930608 chrX 12937713 12937729 HMS-Beagle 5 7129 4.0 19.5 11.8 0.4 7137 chrX 12930592 intron fne + chrX 12934160 intron fne + chrX 12937729 intron fne + chrX_5_12930001 chrX_12930001 RAL-340_100b 4079 chrX 8037823 8037823 chrX 12946233 12946233 4 4908410 21.0 31.5 26.2 0.1 4908410 chrX 8037823 3` UTR fs(1)h - chrX 10492028 exon spri - chrX 12946233 3` UTR fne + chrX_4_10490001 chrX_10490001 RAL-340_100b 4080 chrX 11109417 11109417 chrX 12946233 12946233 10 1836816 24.5 31.5 28.0 0.3 1836816 chrX 11109417 intron Hsp60 + chrX 12027825 exon Usp7 - chrX 12946233 3` UTR fne + chrX_10_12025001 chrX_12025001 RAL-340_100b 4081 chrX 4389377 4389380 chrX 12946234 12946234 5 8556855 28.5 31.5 30.0 0.2 8556857 chrX 4389377 intron CR32773 - chrX 8667806 intergenic not near genes chrX 12946234 3` UTR fne + chrX_5_8665001 chrX_8665001 RAL-340_100b 4082 chrX 8037822 8037824 chrX 12946234 12946234 5 4908411 22.0 31.5 26.8 0.2 4908412 chrX 8037822 3` UTR fs(1)h - chrX 10492028 exon spri - chrX 12946234 3` UTR fne + chrX_5_10490001 chrX_10490001 RAL-340_100b 4083 chrX 8810799 8810799 chrX 12946234 12946234 8 4135435 57.0 31.5 44.2 0.2 4135435 chrX 8810799 intergenic not near genes chrX 10878516 exon Ork1 - chrX 12946234 3` UTR fne + chrX_8_10875001 chrX_10875001 RAL-340_100b 4084 chrX 9845361 9845361 chrX 12946234 12946234 4 3100873 93.0 31.5 62.2 0.1 3100873 chrX 9845361 intron CG32698 + chrX 11395798 intron dlg1 + chrX 12946234 3` UTR fne + chrX_4_11395001 chrX_11395001 RAL-340_100b 4085 chrX 11109417 11109417 chrX 12946234 12946234 12 1836817 24.5 31.5 28.0 0.4 1836817 chrX 11109417 intron Hsp60 + chrX 12027826 exon Usp7 - chrX 12946234 3` UTR fne + chrX_12_12025001 chrX_12025001 RAL-340_100b 4086 chrX 12946234 12946234 chrX 16632148 16632150 8 3685915 35.5 24.5 30.0 0.3 3685916 chrX 12946234 3` UTR fne + chrX 14789192 3` UTR rut - chrX 16632150 intron,5` UTR Rok -,CG9777 - chrX_8_14785001 chrX_14785001 RAL-340_100b 4087 chrX 12946234 12946234 chrX 18572525 18572527 6 5626292 35.5 26.0 30.8 0.2 5626293 chrX 12946234 3` UTR fne + chrX 15759380 intron Graf - chrX 18572527 intergenic not near genes chrX_6_15755001 chrX_15755001 RAL-340_100b 4088 chrX 8037823 8037824 chrX 12946235 12946235 4 4908411 22.0 31.5 26.8 0.1 4908412 chrX 8037823 3` UTR fs(1)h - chrX 10492029 exon spri - chrX 12946235 3` UTR fne + chrX_4_10490001 chrX_10490001 RAL-340_100b 4089 chrX 9845361 9845361 chrX 12946235 12946235 4 3100874 93.0 31.5 62.2 0.1 3100874 chrX 9845361 intron CG32698 + chrX 11395798 intron dlg1 + chrX 12946235 3` UTR fne + chrX_4_11395001 chrX_11395001 RAL-340_100b 4090 chrX 11109417 11109417 chrX 12946235 12946235 13 1836818 24.5 31.5 28.0 0.4 1836818 chrX 11109417 intron Hsp60 + chrX 12027826 exon Usp7 - chrX 12946235 3` UTR fne + chrX_13_12025001 chrX_12025001 RAL-340_100b 4091 chrX 12946235 12946235 chrX 18572524 18572527 5 5626291 35.5 26.0 30.8 0.2 5626292 chrX 12946235 3` UTR fne + chrX 15759381 intron Graf - chrX 18572527 intergenic not near genes chrX_5_15755001 chrX_15755001 RAL-340_100b 4092 chrX 12987700 12987736 chrX 12987807 12987827 6 104 2.5 7.0 4.8 1.0 127 chrX 12987700 intergenic not near genes chrX 12987764 intergenic not near genes chrX 12987827 intergenic not near genes chrX_6_12985001 chrX_12985001 RAL-340_100b 4093 chrX 13018498 13018528 chrX 13018604 13018637 8 108 5.5 3.5 4.5 1.5 139 chrX 13018498 intron rad + chrX 13018568 intron rad + chrX 13018637 intron rad + chrX_8_13015001 chrX_13015001 RAL-340_100b 4094 chrX 13061331 13061374 chrX 13061467 13061509 21 130 6.5 4.0 5.2 3.4 178 chrX 13061331 intron rad + chrX 13061420 intron rad + chrX 13061509 intron rad + chrX_21_13060001 chrX_13060001 RAL-340_100b 4095 chrX 13104052 13104058 chrX 13104165 13104171 7 113 8.0 0.5 4.2 1.3 119 chrX 13104052 intron CG43313 - chrX 13104112 intron CG43313 - chrX 13104171 intron CG43313 - chrX_7_13100001 chrX_13100001 RAL-340_100b 4096 chrX 13106244 13106276 chrX 13106344 13106386 19 104 4.0 9.0 6.5 2.5 142 chrX 13106244 intron CG43313 - chrX 13106315 intron CG43313 - chrX 13106386 intron CG43313 - chrX_19_13105001 chrX_13105001 RAL-340_100b 4097 chrX 13146580 13146620 chrX 13146693 13146733 7 112 2.5 2.0 2.2 2.2 153 chrX 13146580 intron CG32645 + chrX 13146656 intron CG32645 + chrX 13146733 intron CG32645 + chrX_7_13145001 chrX_13145001 RAL-340_100b 4098 chrX 13172345 13172381 chrX 13172446 13172482 11 101 5.0 11.5 8.2 1.2 137 chrX 13172345 exon CG34411 - chrX 13172414 intron CG34411 - chrX 13172482 intron CG34411 - chrX_11_13170001 chrX_13170001 RAL-340_100b 4099 chrX 13229078 13229098 chrX 13229173 13229208 11 106 1.5 12.0 6.8 1.4 130 chrX 13229078 intron mew - chrX 13229143 intron mew - chrX 13229208 intron mew - chrX_11_13225001 chrX_13225001 RAL-340_100b 4100 chrX 13329304 13329305 chrX 13329423 13329424 4 119 6.5 3.5 5.0 0.7 120 chrX 13329304 intergenic IP3K2 + chrX 13329364 intergenic IP3K2 +,Jafrac1 + chrX 13329424 intergenic IP3K2 +,Jafrac1 + chrX_4_13325001 chrX_13325001 RAL-340_100b 4101 chrX 13329306 13329318 chrX 13329409 13329437 4 114 6.5 3.5 5.0 0.7 131 chrX 13329306 intergenic IP3K2 + chrX 13329372 intergenic IP3K2 +,Jafrac1 + chrX 13329437 intergenic IP3K2 +,Jafrac1 + chrX_4_13325001 chrX_13325001 RAL-340_100b 4102 chrX 13374824 13374838 chrX 13374929 13374941 8 103 11.5 4.5 8.0 0.9 117 chrX 13374824 intron CG1640 + chrX 13374882 intron CG1640 + chrX 13374941 intron CG1640 + chrX_8_13370001 chrX_13370001 RAL-340_100b 4103 chrX 13374844 13374845 chrX 13374932 13374950 4 97 10.0 5.0 7.5 0.5 106 chrX 13374844 intron CG1640 + chrX 13374897 intron CG1640 + chrX 13374950 intron CG1640 + chrX_4_13370001 chrX_13370001 RAL-340_100b 4104 chrX 13374853 13374864 chrX 13374957 13374969 12 104 7.0 8.0 7.5 1.4 116 chrX 13374853 intron CG1640 + chrX 13374911 intron CG1640 + chrX 13374969 intron CG1640 + chrX_12_13370001 chrX_13370001 RAL-340_100b 4105 chrX 13401458 13401519 chrX 13401835 13401896 jockey 15 366 4.5 4.0 4.2 2.9 438 chrX 13401458 intergenic CG1673 +,CG12725 - chrX 13401677 intergenic CG12725 -,CG1673 + chrX 13401896 3` UTR CG12725 - chrX_15_13400001 chrX_13400001 RAL-340_100b 4106 chrX 13421453 13421466 chrX 13421547 13421575 6 106 0.0 6.0 3.0 1.5 122 chrX 13421453 intergenic Set2 + chrX 13421514 intergenic Set2 + chrX 13421575 intergenic not near genes chrX_6_13420001 chrX_13420001 RAL-340_100b 4107 chrX 13429442 13429484 chrX 13430616 13430658 jockey 13 1172 7.0 5.5 6.2 1.8 1216 chrX 13429442 intergenic not near genes chrX 13430050 intergenic not near genes chrX 13430658 intergenic not near genes chrX_13_13430001 chrX_13430001 RAL-340_100b 4108 chrX 13443407 13443412 chrX 13443493 13443514 8 95 47.5 49.5 48.5 0.2 107 chrX 13443407 intergenic not near genes chrX 13443460 intergenic not near genes chrX 13443514 intergenic not near genes chrX_8_13440001 chrX_13440001 RAL-340_100b 4109 chrX 13443416 13443419 chrX 13443505 13443523 5 99 50.0 58.0 54.0 0.1 107 chrX 13443416 intergenic not near genes chrX 13443470 intergenic not near genes chrX 13443523 intergenic not near genes chrX_5_13440001 chrX_13440001 RAL-340_100b 4110 chrX 13463627 13463669 chrX 13469229 13469271 mdg3 13 5601 16.5 6.0 11.2 1.1 5644 chrX 13463627 intron Neto + chrX 13466449 intron Neto + chrX 13469271 intron Neto + chrX_13_13465001 chrX_13465001 RAL-340_100b 4111 chrX 13463670 13463678 chrX 13469222 13469224 mdg3 5 5571 8.0 5.0 6.5 0.7 5554 chrX 13463670 intron Neto + chrX 13466447 intron Neto + chrX 13469224 intron Neto + chrX_5_13465001 chrX_13465001 RAL-340_100b 4112 chrX 13485690 13485712 chrX 13485795 13485828 16 112 13.0 10.5 11.8 1.2 138 chrX 13485690 intron Neto + chrX 13485759 intron Neto + chrX 13485828 intron Neto + chrX_16_13485001 chrX_13485001 RAL-340_100b 4113 chrX 13485716 13485724 chrX 13485822 13485840 5 111 11.0 19.0 15.0 0.3 124 chrX 13485716 intron Neto + chrX 13485778 intron Neto + chrX 13485840 intron Neto + chrX_5_13485001 chrX_13485001 RAL-340_100b 4114 chrX 13770334 13770368 chrX 13770435 13770469 8 101 11.0 12.0 11.5 0.6 135 chrX 13770334 intron rdgB + chrX 13770402 intron rdgB + chrX 13770469 intron rdgB + chrX_8_13770001 chrX_13770001 RAL-340_100b 4115 chrX 13875933 13875987 chrX 13876037 13876071 10 105 5.5 0.0 2.8 2.6 138 chrX 13875933 intron mamo - chrX 13876002 intron mamo - chrX 13876071 intron mamo - chrX_10_13875001 chrX_13875001 RAL-340_100b 4116 chrX 13908781 13908793 chrX 13908879 13908884 4 97 15.0 25.0 20.0 0.2 103 chrX 13908781 intron mamo - chrX 13908832 intron mamo - chrX 13908884 intron mamo - chrX_4_13905001 chrX_13905001 RAL-340_100b 4117 chrX 13934272 13934301 chrX 13934379 13934409 31 106 37.5 24.5 31.0 1.0 137 chrX 13934272 intron mamo - chrX 13934340 intron mamo - chrX 13934409 intron mamo - chrX_31_13930001 chrX_13930001 RAL-340_100b 4118 chrX 13934302 13934318 chrX 13934375 13934426 21 105 26.0 20.0 23.0 0.9 124 chrX 13934302 intron mamo - chrX 13934364 intron mamo - chrX 13934426 intron mamo - chrX_21_13930001 chrX_13930001 RAL-340_100b 4119 chrX 13935490 13935527 chrX 13935598 13935635 39 105 17.0 34.5 25.8 1.5 145 chrX 13935490 intron mamo - chrX 13935562 intron mamo - chrX 13935635 intron mamo - chrX_39_13935001 chrX_13935001 RAL-340_100b 4120 chrX 13937956 13938003 chrX 13941252 13941299 I-element 29 3293 8.0 6.0 7.0 3.6 3343 chrX 13937956 intron mamo - chrX 13939628 intron mamo - chrX 13941299 intron mamo - chrX_29_13935001 chrX_13935001 RAL-340_100b 4121 chrX 13943280 13943301 chrX 13943358 13943361 13 108 0.0 5.0 2.5 3.7 81 chrX 13943280 intron mamo - chrX 13943320 intron mamo - chrX 13943361 intron mamo - chrX_13_13940001 chrX_13940001 RAL-340_100b 4122 chrX 13975886 13975902 chrX 13975958 13976004 8 91 0.0 6.5 3.2 1.9 118 chrX 13975886 intron mamo - chrX 13975945 intron mamo - chrX 13976004 intron mamo - chrX_8_13975001 chrX_13975001 RAL-340_100b 4123 chrX 14104998 14105053 chrX 14114174 14114194 roo 17 9173 13.5 6.0 9.8 1.6 9196 chrX 14104998 intergenic not near genes chrX 14109596 intergenic not near genes chrX 14114194 5` UTR CR44657 + chrX_17_14105001 chrX_14105001 RAL-340_100b 4124 chrX 14131483 14131519 chrX 14131576 14131625 19 97 4.0 8.5 6.2 2.6 142 chrX 14131483 intergenic not near genes chrX 14131554 intergenic not near genes chrX 14131625 intergenic not near genes chrX_19_14130001 chrX_14130001 RAL-340_100b 4125 chrX 14157571 14157621 chrX 14163253 14163268 297 10 5675 1.5 6.0 3.8 2.1 5697 chrX 14157571 intergenic not near genes chrX 14160420 intergenic not near genes chrX 14163268 intergenic not near genes chrX_10_14160001 chrX_14160001 RAL-340_100b 4126 chrX 14209440 14209489 chrX 14209556 14209605 29 114 8.5 13.5 11.0 2.4 165 chrX 14209440 intron,intron l(1)G0007 +,l(1)G0469 - chrX 14209522 intron,intron l(1)G0007 +,l(1)G0469 - chrX 14209605 intron,intron l(1)G0007 +,l(1)G0469 - chrX_29_14205001 chrX_14205001 RAL-340_100b 4127 chrX 14401524 14401574 chrX 14401658 14401707 13 133 6.0 3.5 4.8 2.2 183 chrX 14401524 intron dpr8 + chrX 14401616 intron dpr8 + chrX 14401707 intron dpr8 + chrX_13_14400001 chrX_14400001 RAL-340_100b 4128 chrX 14416285 14416300 chrX 14421078 14421093 F-element 5 4793 18.5 4.0 11.2 0.4 4808 chrX 14416285 intron dpr8 + chrX 14418689 intron dpr8 + chrX 14421093 intron dpr8 + chrX_5_14415001 chrX_14415001 RAL-340_100b 4129 chrX 14416308 14416342 chrX 14421076 14421088 F-element 11 4779 11.0 4.0 7.5 1.3 4780 chrX 14416308 intron dpr8 + chrX 14418698 intron dpr8 + chrX 14421088 intron dpr8 + chrX_11_14415001 chrX_14415001 RAL-340_100b 4130 chrX 14426132 14426161 chrX 14426243 14426272 11 107 5.0 15.5 10.2 1.0 140 chrX 14426132 intron dpr8 + chrX 14426202 intron dpr8 + chrX 14426272 intron dpr8 + chrX_11_14425001 chrX_14425001 RAL-340_100b 4131 chrX 14484798 14484986 chrX 14484925 14485100 23 117 0.0 1.0 0.5 15.3 302 chrX 14484798 intergenic not near genes chrX 14484949 intergenic not near genes chrX 14485100 intergenic not near genes chrX_23_14480001 chrX_14480001 RAL-340_100b 4132 chrX 14528663 14528715 chrX 14528781 14528833 15 116 5.5 3.0 4.2 2.9 170 chrX 14528663 intergenic not near genes chrX 14528748 intergenic not near genes chrX 14528833 intergenic not near genes chrX_15_14525001 chrX_14525001 RAL-340_100b 4133 chrX 9845361 9845361 chrX 14544906 14544908 5 4699546 93.0 29.0 61.0 0.1 4699547 chrX 9845361 intron CG32698 + chrX 12195134 intron Ten-a + chrX 14544908 intergenic not near genes chrX_5_12195001 chrX_12195001 RAL-340_100b 4134 chrX 14560247 14560254 chrX 14560356 14560362 5 109 17.0 6.5 11.8 0.4 115 chrX 14560247 intergenic not near genes chrX 14560304 intergenic not near genes chrX 14560362 intergenic not near genes chrX_5_14560001 chrX_14560001 RAL-340_100b 4135 chrX 14560255 14560302 chrX 14560354 14560401 30 105 7.5 6.5 7.0 3.8 146 chrX 14560255 intergenic not near genes chrX 14560328 intergenic not near genes chrX 14560401 intergenic not near genes chrX_30_14560001 chrX_14560001 RAL-340_100b 4136 chrX 14628160 14628214 chrX 14628276 14628330 19 114 5.0 4.0 4.5 3.5 170 chrX 14628160 intron NetA - chrX 14628245 intron NetA - chrX 14628330 intron NetA - chrX_19_14625001 chrX_14625001 RAL-340_100b 4137 chrX 8110605 8110631 chrX 14635204 14635204 4 6524583 19.0 24.0 21.5 0.2 6524599 chrX 8110605 intron Gclc - chrX 11372904 intron dlg1 + chrX 14635204 intron NetA - chrX_4_11370001 chrX_11370001 RAL-340_100b 4138 chrX 14636451 14636456 chrX 14641917 14641922 I-element 5 5465 23.5 11.5 17.5 0.3 5471 chrX 14636451 intron NetA - chrX 14639186 intron NetA - chrX 14641922 intron NetA - chrX_5_14635001 chrX_14635001 RAL-340_100b 4139 chrX 14636457 14636475 chrX 14641908 14641923 I-element 12 5463 13.0 10.0 11.5 1.0 5466 chrX 14636457 intron NetA - chrX 14639190 intron NetA - chrX 14641923 intron NetA - chrX_12_14635001 chrX_14635001 RAL-340_100b 4140 chrX 14636477 14636487 chrX 14641901 14641953 I-element 5 5456 10.5 8.5 9.5 0.5 5476 chrX 14636477 intron NetA - chrX 14639215 intron NetA - chrX 14641953 intron NetA - chrX_5_14635001 chrX_14635001 RAL-340_100b 4141 chrX 14771466 14771467 chrX 14771615 14771616 4 149 15.5 3.0 9.2 0.4 150 chrX 14771466 intergenic not near genes chrX 14771541 intergenic not near genes chrX 14771616 intergenic not near genes chrX_4_14770001 chrX_14770001 RAL-340_100b 4142 chrX 14771492 14771520 chrX 14771616 14771670 7 140 4.5 4.5 4.5 1.3 178 chrX 14771492 intergenic not near genes chrX 14771581 intergenic not near genes chrX 14771670 intergenic not near genes chrX_7_14770001 chrX_14770001 RAL-340_100b 4143 chrX 14774959 14775012 chrX 14775061 14775115 6 98 5.0 0.0 2.5 1.7 156 chrX 14774959 intergenic CG5334 + chrX 14775037 intergenic CG5334 + chrX 14775115 intergenic CG5334 + chrX_6_14775001 chrX_14775001 RAL-340_100b 4144 chrX 14778012 14778050 chrX 14782834 14782852 Doc 17 4821 8.0 6.0 7.0 2.1 4840 chrX 14778012 intergenic CG5347 + chrX 14780432 intergenic not near genes chrX 14782852 intergenic Ag5r2 - chrX_17_14780001 chrX_14780001 RAL-340_100b 4145 chrX 14818741 14818798 chrX 14823970 14824019 copia 16 5221 4.0 4.0 4.0 3.2 5278 chrX 14818741 intron rut - chrX 14821380 intron rut - chrX 14824019 intron rut - chrX_16_14820001 chrX_14820001 RAL-340_100b 4146 chrX 14861923 14861978 chrX 14862112 14862167 20 194 43.5 47.0 45.2 0.4 244 chrX 14861923 intron Flo2 + chrX 14862045 intron Flo2 + chrX 14862167 intron Flo2 + chrX_20_14860001 chrX_14860001 RAL-340_100b 4147 chrX 14887973 14888010 chrX 14888065 14888111 4 99 0.0 0.0 0.0 4.0 138 chrX 14887973 intron,intron Flo2 +,CG9514 - chrX 14888042 intron,intron Flo2 +,CG9514 - chrX 14888111 intron,intron Flo2 +,CG9514 - chrX_4_14885001 chrX_14885001 RAL-340_100b 4148 chrX 14936846 14936890 chrX 14946128 14946171 roo 23 9281 4.5 13.0 8.8 2.3 9325 chrX 14936846 intron pdgy - chrX 14941508 intron pdgy - chrX 14946171 intron pdgy - chrX_23_14940001 chrX_14940001 RAL-340_100b 4149 chrX 14950045 14950059 chrX 14950147 14950150 8 101 22.0 0.0 11.0 0.7 105 chrX 14950045 intron pdgy - chrX 14950098 intron pdgy - chrX 14950150 intron pdgy - chrX_8_14950001 chrX_14950001 RAL-340_100b 4150 chrX 14977411 14977428 chrX 14977538 14977544 5 123 9.5 2.5 6.0 0.7 133 chrX 14977411 intron eag + chrX 14977478 intron eag + chrX 14977544 intron eag + chrX_5_14975001 chrX_14975001 RAL-340_100b 4151 chrX 14977430 14977459 chrX 14977535 14977580 5 114 3.5 2.0 2.8 1.3 150 chrX 14977430 intron eag + chrX 14977505 intron eag + chrX 14977580 intron eag + chrX_5_14975001 chrX_14975001 RAL-340_100b 4152 chrX 2912171 2912174 chrX 14985241 14985241 7 12073069 44.0 27.5 35.8 0.2 12073070 chrX 2912171 intron kirre + chrX 8948706 intron rdgA + chrX 14985241 intron eag + chrX_7_8945001 chrX_8945001 RAL-340_100b 4153 chrX 15025203 15025240 chrX 15025322 15025359 15 117 0.0 8.5 4.2 2.9 156 chrX 15025203 intron,intron hiw -,be + chrX 15025281 intron,intron hiw -,be + chrX 15025359 intron,intron hiw -,be + chrX_15_15025001 chrX_15025001 RAL-340_100b 4154 chrX 15200621 15200640 chrX 15200722 15200741 5 101 1.5 6.0 3.8 1.0 120 chrX 15200621 intergenic not near genes chrX 15200681 intergenic not near genes chrX 15200741 intergenic not near genes chrX_5_15200001 chrX_15200001 RAL-340_100b 4155 chrX 15273696 15273734 chrX 15274871 15274916 1360 16 1180 7.5 10.5 9.0 1.6 1220 chrX 15273696 intergenic not near genes chrX 15274306 intergenic not near genes chrX 15274916 intergenic not near genes chrX_16_15270001 chrX_15270001 RAL-340_100b 4156 chrX 15277629 15277668 chrX 15277729 15277771 13 108 4.0 9.0 6.5 1.7 142 chrX 15277629 intergenic not near genes chrX 15277700 intergenic not near genes chrX 15277771 intergenic not near genes chrX_13_15275001 chrX_15275001 RAL-340_100b 4157 chrX 15334335 15334385 chrX 15334455 15334505 21 117 7.0 5.5 6.2 2.9 170 chrX 15334335 intron HDAC6 + chrX 15334420 intron HDAC6 + chrX 15334505 intron,3` UTR HDAC6 +,CR44998 - chrX_21_15330001 chrX_15330001 RAL-340_100b 4158 chrX 15358284 15358340 chrX 15358397 15358453 22 110 2.0 7.5 4.8 3.8 169 chrX 15358284 intron acj6 - chrX 15358368 intron acj6 - chrX 15358453 intron acj6 - chrX_22_15355001 chrX_15355001 RAL-340_100b 4159 chrX 15369810 15369860 chrX 15369912 15369953 17 104 4.0 8.5 6.2 2.4 143 chrX 15369810 intron acj6 - chrX 15369882 intron acj6 - chrX 15369953 intron acj6 - chrX_17_15365001 chrX_15365001 RAL-340_100b 4160 chrX 15413038 15413087 chrX 15417359 15417369 Juan 22 4321 8.0 7.0 7.5 2.6 4331 chrX 15413038 intron Cngl - chrX 15415204 intron Cngl - chrX 15417369 intron Cngl - chrX_22_15415001 chrX_15415001 RAL-340_100b 4161 chrX 15429222 15429245 chrX 15429318 15429352 9 103 10.5 3.0 6.8 1.2 130 chrX 15429222 intron Cngl - chrX 15429287 intron Cngl - chrX 15429352 intron Cngl - chrX_9_15425001 chrX_15425001 RAL-340_100b 4162 chrX 15429247 15429264 chrX 15429314 15429371 12 94 5.0 3.0 4.0 2.4 124 chrX 15429247 intron Cngl - chrX 15429309 intron Cngl - chrX 15429371 intron Cngl - chrX_12_15425001 chrX_15425001 RAL-340_100b 4163 chrX 15435054 15435101 chrX 15435178 15435224 8 123 5.0 5.5 5.2 1.3 170 chrX 15435054 intron Cngl - chrX 15435139 intron Cngl - chrX 15435224 intron Cngl - chrX_8_15435001 chrX_15435001 RAL-340_100b 4164 chrX 15678012 15678068 chrX 15678114 15678170 34 99 6.5 8.5 7.5 4.0 158 chrX 15678012 intergenic CG12708 + chrX 15678091 intergenic CG12708 + chrX 15678170 intergenic CG12708 + chrX_34_15675001 chrX_15675001 RAL-340_100b 4165 chrX 15970886 15970912 chrX 15970989 15971013 4 102 0.0 9.0 4.5 0.7 127 chrX 15970886 intron mmd - chrX 15970950 intron mmd - chrX 15971013 intron mmd - chrX_4_15970001 chrX_15970001 RAL-340_100b 4166 chrX 16095292 16095335 chrX 16095390 16095438 5 97 27.0 30.0 28.5 0.2 146 chrX 16095292 3` UTR,exon CG42353 -,CG42354 - chrX 16095365 3` UTR,exon CG42353 -,CG42354 - chrX 16095438 intron,intron CG42353 -,CG42354 - chrX_5_16095001 chrX_16095001 RAL-340_100b 4167 chrX 16100541 16100584 chrX 16100640 16100688 17 103 5.5 6.0 5.8 2.5 147 chrX 16100541 intron,intron CG42353 -,CG42354 - chrX 16100614 intron,intron CG42353 -,CG42354 - chrX 16100688 intron,intron CG42353 -,CG42354 - chrX_17_16100001 chrX_16100001 RAL-340_100b 4168 chrX 16139273 16139292 chrX 16139379 16139404 6 111 0.0 11.0 5.5 0.9 131 chrX 16139273 intron disco-r - chrX 16139338 intron disco-r - chrX 16139404 intron disco-r - chrX_6_16135001 chrX_16135001 RAL-340_100b 4169 chrX 16222757 16222791 chrX 16231132 16231166 roo 17 8375 4.0 4.5 4.2 3.3 8409 chrX 16222757 intergenic not near genes chrX 16226962 intergenic not near genes chrX 16231166 intergenic not near genes chrX_17_16225001 chrX_16225001 RAL-340_100b 4170 chrX 16245933 16245956 chrX 16246059 16246088 INE-1 6 131 10.5 0.0 5.2 1.0 155 chrX 16245933 intergenic not near genes chrX 16246010 intergenic not near genes chrX 16246088 intergenic not near genes chrX_6_16245001 chrX_16245001 RAL-340_100b 4171 chrX 16295515 16295549 chrX 16295624 16295632 9 104 7.0 0.5 3.8 1.9 117 chrX 16295515 intron CG9911 - chrX 16295574 intron CG9911 - chrX 16295632 intron CG9911 - chrX_9_16295001 chrX_16295001 RAL-340_100b 4172 chrX 16340644 16340697 chrX 16349826 16349879 roo 11 9176 8.0 8.5 8.2 1.2 9235 chrX 16340644 intergenic Dsp1 + chrX 16345262 intergenic not near genes chrX 16349879 intergenic sl + chrX_11_16345001 chrX_16345001 RAL-340_100b 4173 chrX 16492623 16492674 chrX 16498225 16498275 mdg3 13 5599 7.0 8.5 7.8 1.5 5652 chrX 16492623 intron para - chrX 16495449 intron para - chrX 16498275 exon para - chrX_13_16495001 chrX_16495001 RAL-340_100b 4174 chrX 7978951 7978952 chrX 16525740 16525779 4 8546808 107.5 31.0 69.2 0.1 8546828 chrX 7978951 intron sn + chrX 12252365 intron Ten-a + chrX 16525779 intron para - chrX_4_12250001 chrX_12250001 RAL-340_100b 4175 chrX 16529376 16529443 chrX 16529520 16529579 9 138 0.0 4.5 2.2 2.8 203 chrX 16529376 intron para - chrX 16529478 intron para - chrX 16529579 intron para - chrX_9_16525001 chrX_16525001 RAL-340_100b 4176 chrX 16574968 16574971 chrX 16575268 16575272 4 301 26.5 25.0 25.8 0.1 304 chrX 16574968 intron CanA-14F - chrX 16575120 intron CanA-14F - chrX 16575272 intron CanA-14F - chrX_4_16575001 chrX_16575001 RAL-340_100b 4177 chrX 16574972 16574993 chrX 16575267 16575294 26 298 26.5 25.0 25.8 1.0 322 chrX 16574972 intron CanA-14F - chrX 16575133 intron CanA-14F - chrX 16575294 intron CanA-14F - chrX_26_16575001 chrX_16575001 RAL-340_100b 4178 chrX 16574995 16575006 chrX 16575271 16575307 18 292 25.5 27.5 26.5 0.7 312 chrX 16574995 intron CanA-14F - chrX 16575151 intron CanA-14F - chrX 16575307 intron CanA-14F - chrX_18_16575001 chrX_16575001 RAL-340_100b 4179 chrX 16575008 16575009 chrX 16575299 16575310 5 297 24.5 54.5 39.5 0.1 302 chrX 16575008 intron CanA-14F - chrX 16575159 intron CanA-14F - chrX 16575310 intron CanA-14F - chrX_5_16575001 chrX_16575001 RAL-340_100b 4180 chrX 16575011 16575023 chrX 16575281 16575294 12 280 21.0 35.5 28.2 0.4 283 chrX 16575011 intron CanA-14F - chrX 16575152 intron CanA-14F - chrX 16575294 intron CanA-14F - chrX_12_16575001 chrX_16575001 RAL-340_100b 4181 chrX 16623471 16623501 chrX 16623572 16623579 9 99 10.5 1.0 5.8 1.3 108 chrX 16623471 intergenic not near genes chrX 16623525 intergenic Rok - chrX 16623579 intergenic Rok - chrX_9_16620001 chrX_16620001 RAL-340_100b 4182 chrX 16668757 16668774 chrX 16668859 16668876 8 100 10.5 12.0 11.2 0.7 119 chrX 16668757 intergenic r +,CG13012 - chrX 16668816 intergenic CG13012 -,r + chrX 16668876 3` UTR CG13012 - chrX_8_16665001 chrX_16665001 RAL-340_100b 4183 chrX 16668775 16668805 chrX 16668857 16668910 27 100 6.0 11.0 8.5 2.8 135 chrX 16668775 intergenic CG13012 -,r + chrX 16668842 3` UTR CG13012 - chrX 16668910 3` UTR CG13012 - chrX_27_16665001 chrX_16665001 RAL-340_100b 4184 chrX 16689599 16689656 chrX 16689710 16689731 35 99 6.0 5.0 5.5 5.4 132 chrX 16689599 intron Sep4 - chrX 16689665 intron Sep4 - chrX 16689731 intron Sep4 - chrX_35_16685001 chrX_16685001 RAL-340_100b 4185 chrX 16689871 16689922 chrX 16690092 16690111 18 214 9.5 6.0 7.8 2.0 240 chrX 16689871 intron Sep4 - chrX 16689991 intron Sep4 - chrX 16690111 intron Sep4 - chrX_18_16685001 chrX_16685001 RAL-340_100b 4186 chrX 16713788 16713812 chrX 16713877 16713919 13 101 3.5 6.5 5.0 2.2 131 chrX 16713788 exon CG13008 + chrX 16713854 exon CG13008 + chrX 16713919 exon CG13008 + chrX_13_16710001 chrX_16710001 RAL-340_100b 4187 chrX 4664215 4664216 chrX 16789270 16789329 4 12125071 26.0 40.0 33.0 0.1 12125114 chrX 4664215 intron CG3009 - chrX 10726772 intron CG32676 - chrX 16789329 3` UTR Sap30 + chrX_4_10725001 chrX_10725001 RAL-340_100b 4188 chrX 16821210 16821255 chrX 16821315 16821361 9 104 7.0 0.0 3.5 2.0 151 chrX 16821210 intron CG4829 + chrX 16821286 intron CG4829 + chrX 16821361 intron CG4829 + chrX_9_16820001 chrX_16820001 RAL-340_100b 4189 chrX 16841379 16841426 chrX 16841482 16841525 29 99 10.5 12.0 11.2 2.4 146 chrX 16841379 exon RSG7 - chrX 16841452 intron RSG7 - chrX 16841525 intron RSG7 - chrX_29_16840001 chrX_16840001 RAL-340_100b 4190 chrX 16870055 16870093 chrX 16870162 16870201 10 107 11.0 4.0 7.5 1.2 146 chrX 16870055 intron CG13003 - chrX 16870128 intron CG13003 - chrX 16870201 intron CG13003 - chrX_10_16870001 chrX_16870001 RAL-340_100b 4191 chrX 16880148 16880154 chrX 16880260 16880270 4 115 18.0 22.0 20.0 0.2 122 chrX 16880148 intergenic not near genes chrX 16880209 intergenic not near genes chrX 16880270 intergenic not near genes chrX_4_16880001 chrX_16880001 RAL-340_100b 4192 chrX 16936001 16936006 chrX 16936444 16936449 jockey 10 443 14.5 26.5 20.5 0.5 448 chrX 16936001 intron CG4928 + chrX 16936225 intron CG4928 + chrX 16936449 intron CG4928 + chrX_10_16935001 chrX_16935001 RAL-340_100b 4193 chrX 16936009 16936014 chrX 16936435 16936457 jockey 9 439 14.0 21.0 17.5 0.5 448 chrX 16936009 intron CG4928 + chrX 16936233 intron CG4928 + chrX 16936457 intron CG4928 + chrX_9_16935001 chrX_16935001 RAL-340_100b 4194 chrX 16936016 16936029 chrX 16936422 16936472 jockey 15 436 11.5 16.5 14.0 1.0 456 chrX 16936016 intron CG4928 + chrX 16936244 intron CG4928 + chrX 16936472 intron CG4928 + chrX_15_16935001 chrX_16935001 RAL-340_100b 4195 chrX 16978863 16978897 chrX 16979133 16979167 15 272 66.0 43.5 54.8 0.3 304 chrX 16978863 intron CG45002 - chrX 16979015 intron CG45002 - chrX 16979167 intron CG45002 - chrX_15_16975001 chrX_16975001 RAL-340_100b 4196 chrX 1053117 1053119 chrX 16983076 16983076 6 15929958 25.0 20.5 22.8 0.3 15929959 chrX 1053117 intron CR44779 + chrX 9018096 intron,intron rdgA +,CR43836 - chrX 16983076 intron CG45002 - chrX_6_9015001 chrX_9015001 RAL-340_100b 4197 chrX 16983076 16983076 chrX 19404963 19404966 21 2421888 22.0 33.5 27.8 0.7 2421890 chrX 16983076 intron CG45002 - chrX 18194021 intron Frq2 + chrX 19404966 intron kek5 + chrX_21_18190001 chrX_18190001 RAL-340_100b 4198 chrX 1053117 1053119 chrX 16983077 16983077 8 15929959 25.0 19.5 22.2 0.3 15929960 chrX 1053117 intron CR44779 + chrX 9018097 intron,intron rdgA +,CR43836 - chrX 16983077 intron CG45002 - chrX_8_9015001 chrX_9015001 RAL-340_100b 4199 chrX 16983077 16983077 chrX 19404963 19404965 15 2421887 22.0 33.5 27.8 0.5 2421888 chrX 16983077 intron CG45002 - chrX 18194021 intron Frq2 + chrX 19404965 intron kek5 + chrX_15_18190001 chrX_18190001 RAL-340_100b 4200 chrX 17011964 17011992 chrX 17012072 17012100 8 105 5.0 10.0 7.5 0.9 136 chrX 17011964 intron CG45002 - chrX 17012032 intron CG45002 - chrX 17012100 intron CG45002 - chrX_8_17010001 chrX_17010001 RAL-340_100b 4201 chrX 17063153 17063190 chrX 17063265 17063302 16 110 10.5 5.0 7.8 1.8 149 chrX 17063153 intron CG45002 - chrX 17063228 intron CG45002 - chrX 17063302 intron CG45002 - chrX_16_17060001 chrX_17060001 RAL-340_100b 4202 chrX 17195193 17195233 chrX 17200302 17200342 flea 14 5106 8.5 20.0 14.2 0.9 5149 chrX 17195193 3` UTR baz + chrX 17197768 3` UTR baz + chrX 17200342 3` UTR baz + chrX_14_17195001 chrX_17195001 RAL-340_100b 4203 chrX 17205833 17205852 chrX 17205948 17205967 4 115 8.0 12.0 10.0 0.4 134 chrX 17205833 intergenic not near genes chrX 17205900 intergenic not near genes chrX 17205967 intergenic CG32564 + chrX_4_17205001 chrX_17205001 RAL-340_100b 4204 chrX 17229931 17229967 chrX 17230059 17230089 20 127 9.0 6.0 7.5 2.4 158 chrX 17229931 intergenic CG10597 - chrX 17230010 intergenic CG10597 - chrX 17230089 intergenic CG10597 - chrX_20_17230001 chrX_17230001 RAL-340_100b 4205 chrX 17234243 17234287 chrX 17234353 17234356 6 104 11.5 1.0 6.2 0.8 113 chrX 17234243 intron f + chrX 17234300 intron f + chrX 17234356 intron f + chrX_6_17230001 chrX_17230001 RAL-340_100b 4206 chrX 17237518 17237527 chrX 17237627 17237636 4 109 12.0 14.5 13.2 0.3 118 chrX 17237518 intron f + chrX 17237577 intron f + chrX 17237636 intron f + chrX_4_17235001 chrX_17235001 RAL-340_100b 4207 chrX 17316341 17316389 chrX 17316450 17316492 31 106 9.0 0.0 4.5 5.6 151 chrX 17316341 intron B-H2 + chrX 17316416 intron B-H2 + chrX 17316492 intron B-H2 + chrX_31_17315001 chrX_17315001 RAL-340_100b 4208 chrX 17352571 17352605 chrX 17352690 17352733 13 123 0.0 5.0 2.5 3.7 162 chrX 17352571 intergenic not near genes chrX 17352652 intergenic not near genes chrX 17352733 intergenic not near genes chrX_13_17350001 chrX_17350001 RAL-340_100b 4209 chrX 17357520 17357532 chrX 17357639 17357651 6 119 9.5 5.0 7.2 0.7 131 chrX 17357520 intergenic not near genes chrX 17357586 intergenic not near genes chrX 17357651 intergenic not near genes chrX_6_17355001 chrX_17355001 RAL-340_100b 4210 chrX 17431329 17431336 chrX 17431695 17431697 jockey 5 365 24.0 7.5 15.8 0.3 368 chrX 17431329 intron CG12994 - chrX 17431513 intron CG12994 - chrX 17431697 intron CG12994 - chrX_5_17430001 chrX_17430001 RAL-340_100b 4211 chrX 17544988 17545032 chrX 17545095 17545139 15 104 11.5 6.0 8.8 1.5 151 chrX 17544988 intron CG43658 - chrX 17545064 intron CG43658 - chrX 17545139 intron CG43658 - chrX_15_17545001 chrX_17545001 RAL-340_100b 4212 chrX 17556923 17556965 chrX 17557447 17557448 mdg1 5 512 4.0 7.0 5.5 0.8 525 chrX 17556923 intron CG43658 - chrX 17557186 intron CG43658 - chrX 17557448 intron CG43658 - chrX_5_17555001 chrX_17555001 RAL-340_100b 4213 chrX 17612588 17612617 chrX 17612691 17612720 10 102 1.5 2.0 1.8 3.6 132 chrX 17612588 intergenic not near genes chrX 17612654 intergenic not near genes chrX 17612720 intergenic not near genes chrX_10_17610001 chrX_17610001 RAL-340_100b 4214 chrX 17612621 17612646 chrX 17612689 17612741 8 82 1.5 2.0 1.8 2.9 120 chrX 17612621 intergenic not near genes chrX 17612681 intergenic not near genes chrX 17612741 intergenic not near genes chrX_8_17610001 chrX_17610001 RAL-340_100b 4215 chrX 17716571 17716590 chrX 17716678 17716702 7 106 23.5 12.0 17.8 0.4 131 chrX 17716571 intron CG42684 + chrX 17716636 intron CG42684 + chrX 17716702 intron CG42684 + chrX_7_17715001 chrX_17715001 RAL-340_100b 4216 chrX 17716591 17716604 chrX 17716673 17716715 7 101 18.0 11.5 14.8 0.4 124 chrX 17716591 intron CG42684 + chrX 17716653 intron CG42684 + chrX 17716715 intron CG42684 + chrX_7_17715001 chrX_17715001 RAL-340_100b 4217 chrX 17740370 17740382 chrX 17740452 17740484 8 94 15.0 6.5 10.8 0.7 114 chrX 17740370 intron CG42684 + chrX 17740427 intron CG42684 + chrX 17740484 intron CG42684 + chrX_8_17740001 chrX_17740001 RAL-340_100b 4218 chrX 17740386 17740403 chrX 17740450 17740505 9 89 10.0 6.0 8.0 1.0 119 chrX 17740386 intron CG42684 + chrX 17740446 intron CG42684 + chrX 17740505 intron CG42684 + chrX_9_17740001 chrX_17740001 RAL-340_100b 4219 chrX 17759650 17759663 chrX 17759754 17759758 7 103 10.0 7.5 8.8 0.7 108 chrX 17759650 intergenic not near genes chrX 17759704 intergenic not near genes chrX 17759758 intergenic not near genes chrX_7_17755001 chrX_17755001 RAL-340_100b 4220 chrX 17782198 17782240 chrX 17782321 17782363 21 122 6.0 8.0 7.0 2.6 165 chrX 17782198 intergenic not near genes chrX 17782280 intergenic not near genes chrX 17782363 intergenic not near genes chrX_21_17780001 chrX_17780001 RAL-340_100b 4221 chrX 17782543 17782597 chrX 17782657 17782711 28 110 10.5 8.0 9.2 2.7 168 chrX 17782543 intergenic not near genes chrX 17782627 intergenic not near genes chrX 17782711 intergenic not near genes chrX_28_17780001 chrX_17780001 RAL-340_100b 4222 chrX 17792936 17792945 chrX 17796249 17796266 flea 5 3317 20.0 9.0 14.5 0.3 3330 chrX 17792936 intron OdsH + chrX 17794601 intron OdsH + chrX 17796266 intron OdsH + chrX_5_17790001 chrX_17790001 RAL-340_100b 4223 chrX 17792972 17792983 chrX 17796257 17796304 flea 8 3314 9.5 13.0 11.2 0.7 3332 chrX 17792972 intron OdsH + chrX 17794638 intron OdsH + chrX 17796304 intron OdsH + chrX_8_17790001 chrX_17790001 RAL-340_100b 4224 chrX 17968871 17968923 chrX 17969015 17969066 7 138 2.0 6.5 4.2 1.3 195 chrX 17968871 intron Sh - chrX 17968968 intron Sh - chrX 17969066 intron Sh - chrX_7_17965001 chrX_17965001 RAL-340_100b 4225 chrX 17972182 17972240 chrX 17972573 17972631 16 385 2.5 3.5 3.0 4.0 449 chrX 17972182 intron Sh - chrX 17972406 intron Sh - chrX 17972631 intron Sh - chrX_16_17970001 chrX_17970001 RAL-340_100b 4226 chrX 18122800 18122849 chrX 18122901 18122950 27 98 3.5 4.0 3.8 5.6 150 chrX 18122800 5` UTR CR45606 + chrX 18122875 5` UTR CR45606 + chrX 18122950 intergenic CR45606 + chrX_27_18120001 chrX_18120001 RAL-340_100b 4227 chrX 18194044 18194096 chrX 18194604 18194645 BS 15 554 8.5 7.5 8.0 1.7 601 chrX 18194044 intron Frq2 + chrX 18194344 intron Frq2 + chrX 18194645 intron Frq2 + chrX_15_18190001 chrX_18190001 RAL-340_100b 4228 chrX 18218043 18218067 chrX 18218178 18218209 9 140 2.5 9.0 5.8 1.3 166 chrX 18218043 intron CG33639 - chrX 18218126 intron CG33639 - chrX 18218209 intron CG33639 - chrX_9_18215001 chrX_18215001 RAL-340_100b 4229 chrX 18268590 18268598 chrX 18268720 18268728 6 130 0.0 5.5 2.8 1.6 138 chrX 18268590 intergenic not near genes chrX 18268659 intergenic not near genes chrX 18268728 intergenic not near genes chrX_6_18265001 chrX_18265001 RAL-340_100b 4230 chrX 18362938 18363082 chrX 18363025 18363184 10 96 16.0 15.0 15.5 0.6 246 chrX 18362938 intergenic CG6106 + chrX 18363061 intergenic not near genes chrX 18363184 intergenic not near genes chrX_10_18360001 chrX_18360001 RAL-340_100b 4231 chrX 18424753 18424804 chrX 18424896 18424936 30 138 10.0 7.0 8.5 3.2 183 chrX 18424753 intron CG42323 + chrX 18424844 intron CG42323 + chrX 18424936 intron CG42323 + chrX_30_18420001 chrX_18420001 RAL-340_100b 4232 chrX 18427361 18427405 chrX 18427797 18427819 28 432 5.0 4.0 4.5 5.1 458 chrX 18427361 intergenic CG42323 + chrX 18427590 intergenic not near genes chrX 18427819 intergenic not near genes chrX_28_18425001 chrX_18425001 RAL-340_100b 4233 chrX 18429481 18429524 chrX 18434817 18434852 Transpac 16 5335 4.5 6.0 5.2 2.6 5371 chrX 18429481 intergenic not near genes chrX 18432166 intergenic not near genes chrX 18434852 intergenic not near genes chrX_16_18430001 chrX_18430001 RAL-340_100b 4234 chrX 18474836 18474886 chrX 18474938 18474958 9 97 5.0 4.0 4.5 1.6 122 chrX 18474836 intron CG32547 - chrX 18474897 intron CG32547 - chrX 18474958 intron CG32547 - chrX_9_18470001 chrX_18470001 RAL-340_100b 4235 chrX 18490029 18490038 chrX 18490209 18490218 4 180 7.5 6.0 6.8 0.5 189 chrX 18490029 intergenic CG15046 - chrX 18490124 intergenic not near genes chrX 18490218 intergenic not near genes chrX_4_18490001 chrX_18490001 RAL-340_100b 4236 chrX 18490043 18490056 chrX 18490203 18490210 7 166 5.0 4.0 4.5 1.3 167 chrX 18490043 intergenic CG15046 - chrX 18490126 intergenic not near genes chrX 18490210 intergenic not near genes chrX_7_18490001 chrX_18490001 RAL-340_100b 4237 chrX 18558754 18558807 chrX 18558861 18558914 12 106 1.0 11.0 6.0 1.7 160 chrX 18558754 intron Bx + chrX 18558834 intron Bx + chrX 18558914 intron Bx + chrX_12_18555001 chrX_18555001 RAL-340_100b 4238 chrX 12946233 12946235 chrX 18572525 18572527 38 5626291 35.5 26.0 30.8 1.2 5626294 chrX 12946233 3` UTR fne + chrX 15759380 intron Graf - chrX 18572527 intergenic not near genes chrX_38_15755001 chrX_15755001 RAL-340_100b 4239 chrX 18621742 18621785 chrX 18621855 18621910 14 125 5.0 5.5 5.2 2.3 168 chrX 18621742 intron CR43289 + chrX 18621826 5` UTR CR43289 + chrX 18621910 intergenic CR43289 + chrX_14_18620001 chrX_18620001 RAL-340_100b 4240 chrX 18644989 18645044 chrX 18645112 18645137 19 114 4.5 6.0 5.2 3.1 148 chrX 18644989 intron Rip11 - chrX 18645063 intron Rip11 - chrX 18645137 intron Rip11 - chrX_19_18645001 chrX_18645001 RAL-340_100b 4241 chrX 18662414 18662440 chrX 18662534 18662560 15 117 29.0 16.0 22.5 0.6 146 chrX 18662414 intergenic CG6696 - chrX 18662487 intergenic CG6696 - chrX 18662560 intergenic CG6696 - chrX_15_18660001 chrX_18660001 RAL-340_100b 4242 chrX 18662441 18662458 chrX 18662533 18662538 15 100 22.0 16.0 19.0 0.8 97 chrX 18662441 intergenic CG6696 - chrX 18662490 intergenic CG6696 - chrX 18662538 intergenic CG6696 - chrX_15_18660001 chrX_18660001 RAL-340_100b 4243 chrX 18671219 18671249 chrX 18671303 18671315 14 101 7.0 4.5 5.8 2.1 96 chrX 18671219 intergenic not near genes chrX 18671267 intergenic not near genes chrX 18671315 intergenic not near genes chrX_14_18670001 chrX_18670001 RAL-340_100b 4244 chrX 18698827 18698877 chrX 18698969 18699019 11 139 1.5 5.5 3.5 2.4 192 chrX 18698827 intergenic not near genes chrX 18698923 intergenic not near genes chrX 18699019 intergenic not near genes chrX_11_18695001 chrX_18695001 RAL-340_100b 4245 chrX 18799642 18799677 chrX 18800042 18800071 5 396 4.5 6.5 5.5 0.8 429 chrX 18799642 intron Pk17E + chrX 18799856 intron Pk17E + chrX 18800071 intron Pk17E + chrX_5_18795001 chrX_18795001 RAL-340_100b 4246 chrX 18857785 18857818 chrX 18857894 18857932 16 109 3.0 7.0 5.0 2.7 147 chrX 18857785 intergenic CG7322 -,CG7288 + chrX 18857858 intergenic CG7322 -,CG7288 + chrX 18857932 intergenic CG7322 -,CG7288 + chrX_16_18855001 chrX_18855001 RAL-340_100b 4247 chrX 18896495 18896548 chrX 18896631 18896678 17 135 7.5 12.0 9.8 1.6 183 chrX 18896495 3` UTR CG7349 + chrX 18896586 intergenic CG7349 + chrX 18896678 intergenic CG7349 + chrX_17_18895001 chrX_18895001 RAL-340_100b 4248 chrX 18947484 18947531 chrX 18947602 18947642 6 116 13.0 5.5 9.2 0.6 158 chrX 18947484 intron CG43759 + chrX 18947563 intron CG43759 + chrX 18947642 intron CG43759 + chrX_6_18945001 chrX_18945001 RAL-340_100b 4249 chrX 18957054 18957092 chrX 18965730 18965768 roo 21 8683 9.5 5.0 7.2 2.6 8714 chrX 18957054 intron CG43759 + chrX 18961411 intron CG43759 + chrX 18965768 intron CG43759 + chrX_21_18960001 chrX_18960001 RAL-340_100b 4250 chrX 18988282 18988550 chrX 18988463 18988664 11 149 0.0 0.0 0.0 11.0 382 chrX 18988282 intron CG43759 + chrX 18988473 intron CG43759 + chrX 18988664 intron CG43759 + chrX_11_18985001 chrX_18985001 RAL-340_100b 4251 chrX 19060386 19060418 chrX 19065195 19065215 Doc 22 4808 12.5 11.5 12.0 1.7 4829 chrX 19060386 intron CG14190 + chrX 19062800 intron CG14190 + chrX 19065215 intron CG14190 + chrX_22_19060001 chrX_19060001 RAL-340_100b 4252 chrX 19060420 19060439 chrX 19065194 19065245 Doc 5 4801 8.5 11.5 10.0 0.5 4825 chrX 19060420 intron CG14190 + chrX 19062832 intron CG14190 + chrX 19065245 intron CG14190 + chrX_5_19060001 chrX_19060001 RAL-340_100b 4253 chrX 19073662 19073694 chrX 19073774 19073806 5 107 8.0 2.0 5.0 0.8 144 chrX 19073662 intergenic not near genes chrX 19073734 intergenic not near genes chrX 19073806 intergenic not near genes chrX_5_19070001 chrX_19070001 RAL-340_100b 4254 chrX 19089965 19089986 chrX 19090080 19090097 6 114 4.5 3.5 4.0 1.2 132 chrX 19089965 intergenic not near genes chrX 19090031 intergenic not near genes chrX 19090097 intergenic not near genes chrX_6_19090001 chrX_19090001 RAL-340_100b 4255 chrX 19098754 19098776 chrX 19098857 19098879 16 102 5.0 5.5 5.2 2.6 125 chrX 19098754 intergenic not near genes chrX 19098816 intergenic not near genes chrX 19098879 intergenic not near genes chrX_16_19095001 chrX_19095001 RAL-340_100b 4256 chrX 19098780 19098783 chrX 19098853 19098886 7 98 3.5 4.5 4.0 1.4 106 chrX 19098780 intergenic not near genes chrX 19098833 intergenic not near genes chrX 19098886 intergenic not near genes chrX_7_19095001 chrX_19095001 RAL-340_100b 4257 chrX 19124415 19124452 chrX 19124528 19124566 11 113 3.5 4.5 4.0 2.2 151 chrX 19124415 intergenic CG15882 - chrX 19124490 intergenic CG15882 - chrX 19124566 intergenic CG15882 -,tgy - chrX_11_19120001 chrX_19120001 RAL-340_100b 4258 chrX 19125679 19125690 chrX 19125761 19125775 6 98 14.0 2.5 8.2 0.7 96 chrX 19125679 intron tgy - chrX 19125727 intron tgy - chrX 19125775 intron tgy - chrX_6_19125001 chrX_19125001 RAL-340_100b 4259 chrX 19136529 19136584 chrX 19143473 19143476 412 16 6937 7.5 5.0 6.2 2.2 6947 chrX 19136529 intergenic not near genes chrX 19140002 intergenic not near genes chrX 19143476 3` UTR RhoGAP18B - chrX_16_19140001 chrX_19140001 RAL-340_100b 4260 chrX 19213993 19214023 chrX 19214173 19214193 10 172 13.0 10.5 11.8 0.8 200 chrX 19213993 exon Mur18B + chrX 19214093 exon Mur18B + chrX 19214193 exon Mur18B + chrX_10_19210001 chrX_19210001 RAL-340_100b 4261 chrX 19214029 19214048 chrX 19214188 19214223 9 168 7.0 13.5 10.2 0.8 194 chrX 19214029 exon Mur18B + chrX 19214126 exon Mur18B + chrX 19214223 exon Mur18B + chrX_9_19210001 chrX_19210001 RAL-340_100b 4262 chrX 13057298 13057304 chrX 19242813 19242814 4 6185512 35.0 36.0 35.5 0.1 6185516 chrX 13057298 intron rad + chrX 16150056 intergenic not near genes chrX 19242814 intergenic not near genes chrX_4_16150001 chrX_16150001 RAL-340_100b 4263 chrX 19280993 19281014 chrX 19281147 19281150 6 151 0.0 2.5 1.2 2.7 157 chrX 19280993 intergenic CG8034 - chrX 19281072 intergenic CG8034 - chrX 19281150 intergenic CG8034 - chrX_6_19280001 chrX_19280001 RAL-340_100b 4264 chrX 19356971 19357023 chrX 19358431 19358507 NOF 11 1470 8.0 7.0 7.5 1.3 1536 chrX 19356971 intron kek5 + chrX 19357739 intron kek5 + chrX 19358507 intron kek5 + chrX_11_19355001 chrX_19355001 RAL-340_100b 4265 chrX 19360083 19360088 chrX 19365681 19365686 4 5599 48.5 50.0 49.2 0.1 5603 chrX 19360083 intron kek5 + chrX 19362884 intron kek5 + chrX 19365686 intron kek5 + chrX_4_19360001 chrX_19360001 RAL-340_100b 4266 chrX 19360045 19360100 chrX 19365689 19365698 8 5610 52.5 50.5 51.5 0.2 5653 chrX 19360045 intron kek5 + chrX 19362872 intron kek5 + chrX 19365698 intron kek5 + chrX_8_19360001 chrX_19360001 RAL-340_100b 4267 chrX 19380140 19380145 chrX 19380401 19380411 pogo 4 264 22.5 3.0 12.8 0.3 271 chrX 19380140 intron kek5 + chrX 19380276 intron kek5 + chrX 19380411 intron kek5 + chrX_4_19380001 chrX_19380001 RAL-340_100b 4268 chrX 19380148 19380187 chrX 19380397 19380453 pogo 8 257 8.0 3.0 5.5 1.2 305 chrX 19380148 intron kek5 + chrX 19380300 intron kek5 + chrX 19380453 intron kek5 + chrX_8_19380001 chrX_19380001 RAL-340_100b 4269 chrX 19404602 19404656 chrX 19404725 19404744 9 114 2.5 2.0 2.2 2.8 142 chrX 19404602 intron kek5 + chrX 19404673 intron kek5 + chrX 19404744 intron kek5 + chrX_9_19400001 chrX_19400001 RAL-340_100b 4270 chrX 16983076 16983077 chrX 19404960 19404965 16 2421887 22.0 33.5 27.8 0.6 2421889 chrX 16983076 intron CG45002 - chrX 18194020 intron Frq2 + chrX 19404965 intron kek5 + chrX_16_18190001 chrX_18190001 RAL-340_100b 4271 chrX 10904502 10904505 chrX 19462707 19462719 6 8558211 31.5 15.0 23.2 0.2 8558217 chrX 10904502 intergenic not near genes chrX 15183610 intron CG43737 + chrX 19462719 intron kek5 + chrX_6_15180001 chrX_15180001 RAL-340_100b 4272 chrX 19472102 19472123 chrX 19472697 19472718 jockey 6 592 14.5 10.0 12.2 0.5 616 chrX 19472102 intergenic kek5 + chrX 19472410 intergenic kek5 + chrX 19472718 intergenic not near genes chrX_6_19470001 chrX_19470001 RAL-340_100b 4273 chrX 19472128 19472135 chrX 19472711 19472729 jockey 6 592 9.5 14.5 12.0 0.5 601 chrX 19472128 intergenic kek5 + chrX 19472428 intergenic not near genes chrX 19472729 intergenic not near genes chrX_6_19470001 chrX_19470001 RAL-340_100b 4274 chrX 19472146 19472157 chrX 19472698 19472751 jockey 5 573 5.0 10.0 7.5 0.6 605 chrX 19472146 intergenic kek5 + chrX 19472448 intergenic not near genes chrX 19472751 intergenic not near genes chrX_5_19470001 chrX_19470001 RAL-340_100b 4275 chrX 19532848 19532866 chrX 19532945 19532959 8 97 22.5 16.0 19.2 0.4 111 chrX 19532848 3` UTR CG32532 - chrX 19532904 3` UTR CG32532 - chrX 19532959 3` UTR CG32532 - chrX_8_19530001 chrX_19530001 RAL-340_100b 4276 chrX 19576534 19576591 chrX 19576637 19576679 37 96 7.5 9.0 8.2 4.0 145 chrX 19576534 intron Tao - chrX 19576606 intron Tao - chrX 19576679 intron Tao - chrX_37_19575001 chrX_19575001 RAL-340_100b 4277 chrX 19593922 19593976 chrX 19594032 19594075 41 105 4.0 7.5 5.8 6.0 153 chrX 19593922 exon CG14205 + chrX 19593998 intron CG14205 + chrX 19594075 intron CG14205 + chrX_41_19590001 chrX_19590001 RAL-340_100b 4278 chrX 19674188 19674241 chrX 19674296 19674339 21 104 7.5 5.0 6.2 2.9 151 chrX 19674188 intron et - chrX 19674264 intron et - chrX 19674339 intron et - chrX_21_19670001 chrX_19670001 RAL-340_100b 4279 chrX 19689381 19689438 chrX 19689484 19689505 13 95 6.0 4.0 5.0 2.2 124 chrX 19689381 intergenic Mer -,CG14227 - chrX 19689443 intergenic Mer -,CG14227 - chrX 19689505 intergenic Mer - chrX_13_19685001 chrX_19685001 RAL-340_100b 4280 chrX 19693734 19693786 chrX 19693844 19693849 15 104 6.0 1.5 3.8 3.1 115 chrX 19693734 intergenic Mer -,CG14229 - chrX 19693792 intergenic CG14229 -,Mer - chrX 19693849 intergenic CG14229 -,Mer - chrX_15_19690001 chrX_19690001 RAL-340_100b 4281 chrX 19707833 19707871 chrX 19707934 19707937 16 98 4.0 3.0 3.5 3.6 104 chrX 19707833 intron meso18E - chrX 19707885 intron meso18E - chrX 19707937 intron meso18E - chrX_16_19705001 chrX_19705001 RAL-340_100b 4282 chrX 19710048 19710104 chrX 19711859 19711905 S-element 20 1803 5.5 6.0 5.8 2.9 1857 chrX 19710048 intron meso18E - chrX 19710976 intron meso18E - chrX 19711905 intron meso18E - chrX_20_19710001 chrX_19710001 RAL-340_100b 4283 chrX 12946233 12946235 chrX 19741476 19741476 roo 4 6795242 35.5 87.5 61.5 0.1 6795243 chrX 12946233 3` UTR fne + chrX 16343854 intergenic not near genes chrX 19741476 intron,3` UTR CoVIb -,CG18809 - chrX_4_16340001 chrX_16340001 RAL-340_100b 4284 chrX 19754548 19754572 chrX 19754648 19754661 4 97 12.0 10.0 11.0 0.3 113 chrX 19754548 intron Pmp70 + chrX 19754604 intron Pmp70 + chrX 19754661 intron Pmp70 + chrX_4_19750001 chrX_19750001 RAL-340_100b 4285 chrX 19797326 19797334 chrX 19804663 19804672 Stalker4 7 7338 49.5 15.5 32.5 0.2 7346 chrX 19797326 intergenic not near genes chrX 19800999 intergenic not near genes chrX 19804672 intergenic not near genes chrX_7_19800001 chrX_19800001 RAL-340_100b 4286 chrX 19822805 19822863 chrX 19822997 19823055 15 188 2.0 3.5 2.8 3.9 250 chrX 19822805 intergenic not near genes chrX 19822930 intergenic skpE - chrX 19823055 intergenic skpE - chrX_15_19820001 chrX_19820001 RAL-340_100b 4287 chrX 19881430 19881484 chrX 19881536 19881590 21 104 1.5 6.5 4.0 4.2 160 chrX 19881430 intron Hers + chrX 19881510 intron Hers + chrX 19881590 intron Hers + chrX_21_19880001 chrX_19880001 RAL-340_100b 4288 chrX 19884066 19884118 chrX 19884167 19884207 17 91 8.0 9.5 8.8 1.7 141 chrX 19884066 intron Hers + chrX 19884136 intron Hers + chrX 19884207 intron Hers + chrX_17_19880001 chrX_19880001 RAL-340_100b 4289 chrX 19971797 19971822 chrX 19971899 19971923 6 102 10.5 14.5 12.5 0.4 126 chrX 19971797 intergenic not near genes chrX 19971860 intergenic not near genes chrX 19971923 intergenic not near genes chrX_6_19970001 chrX_19970001 RAL-340_100b 4290 chrX 19983843 19983896 chrX 19983947 19984001 29 104 8.5 10.5 9.5 2.8 158 chrX 19983843 intergenic not near genes chrX 19983922 intergenic not near genes chrX 19984001 intergenic not near genes chrX_29_19980001 chrX_19980001 RAL-340_100b 4291 chrX 19992395 19992408 chrX 19992496 19992509 4 101 21.5 12.0 16.8 0.2 114 chrX 19992395 intergenic not near genes chrX 19992452 intergenic not near genes chrX 19992509 intergenic not near genes chrX_4_19990001 chrX_19990001 RAL-340_100b 4292 chrX 19992416 19992425 chrX 19992502 19992526 4 93 16.0 15.0 15.5 0.2 110 chrX 19992416 intergenic not near genes chrX 19992471 intergenic not near genes chrX 19992526 intergenic not near genes chrX_4_19990001 chrX_19990001 RAL-340_100b 4293 chrX 20042375 20042416 chrX 20042481 20042510 12 105 6.0 4.5 5.2 1.9 135 chrX 20042375 intron Dop2R - chrX 20042442 intron Dop2R - chrX 20042510 intron Dop2R - chrX_12_20040001 chrX_20040001 RAL-340_100b 4294 chrX 20122521 20122552 chrX 20122654 20122667 13 129 12.5 17.5 15.0 0.8 146 chrX 20122521 exon CG34331 + chrX 20122594 exon CG34331 + chrX 20122667 exon CG34331 + chrX_13_20120001 chrX_20120001 RAL-340_100b 4295 chrX 20122559 20122566 chrX 20122652 20122701 5 126 8.5 17.0 12.8 0.4 142 chrX 20122559 exon CG34331 + chrX 20122630 exon CG34331 + chrX 20122701 intron CG34331 + chrX_5_20120001 chrX_20120001 RAL-340_100b 4296 chrX 20125374 20125397 chrX 20125479 20125504 8 106 0.0 7.0 3.5 1.8 130 chrX 20125374 intergenic CG34331 + chrX 20125439 intergenic CG34331 + chrX 20125504 intergenic CG34331 + chrX_8_20125001 chrX_20125001 RAL-340_100b 4297 chrX 20126872 20126913 chrX 20126968 20127002 10 90 4.0 2.5 3.2 2.4 130 chrX 20126872 intergenic not near genes chrX 20126937 intergenic not near genes chrX 20127002 intergenic not near genes chrX_10_20125001 chrX_20125001 RAL-340_100b 4298 chrX 20132278 20132308 chrX 20132386 20132400 6 104 15.5 23.5 19.5 0.3 122 chrX 20132278 intergenic not near genes chrX 20132339 intergenic not near genes chrX 20132400 intergenic not near genes chrX_6_20130001 chrX_20130001 RAL-340_100b 4299 chrX 20144293 20144312 chrX 20144398 20144417 8 104 7.5 12.0 9.8 0.7 124 chrX 20144293 intergenic not near genes chrX 20144355 intergenic not near genes chrX 20144417 intergenic not near genes chrX_8_20140001 chrX_20140001 RAL-340_100b 4300 chrX 20144464 20144471 chrX 21085284 21085291 INE-1 5 940820 18.5 35.5 27.0 0.2 940827 chrX 20144464 intergenic not near genes chrX 20614878 intron RunxA - chrX 21085291 intergenic not near genes chrX_5_20610001 chrX_20610001 RAL-340_100b 4301 chrX 20271479 20271517 chrX 20271596 20271634 11 117 8.5 0.0 4.2 2.1 155 chrX 20271479 intergenic not near genes chrX 20271556 intergenic not near genes chrX 20271634 intergenic not near genes chrX_11_20270001 chrX_20270001 RAL-340_100b 4302 chrX 20290124 20290179 chrX 20290236 20290258 7 99 3.5 10.0 6.8 0.9 134 chrX 20290124 intergenic not near genes chrX 20290191 intergenic not near genes chrX 20290258 intergenic not near genes chrX_7_20290001 chrX_20290001 RAL-340_100b 4303 chrX 20312856 20312897 chrX 20312959 20313000 21 103 11.5 11.0 11.2 1.7 144 chrX 20312856 intron CG1504 - chrX 20312928 intron CG1504 - chrX 20313000 intron CG1504 - chrX_21_20310001 chrX_20310001 RAL-340_100b 4304 chrX 20362146 20362169 chrX 20362506 20362530 7 361 2.0 2.5 2.2 2.2 384 chrX 20362146 intergenic not near genes chrX 20362338 intergenic not near genes chrX 20362530 intergenic not near genes chrX_7_20360001 chrX_20360001 RAL-340_100b 4305 chrX 20362848 20362870 chrX 20362950 20362972 5 100 7.0 0.5 3.8 1.0 124 chrX 20362848 intergenic not near genes chrX 20362910 intergenic not near genes chrX 20362972 intergenic not near genes chrX_5_20360001 chrX_20360001 RAL-340_100b 4306 chrX 20369319 20369340 chrX 20369407 20369433 13 104 6.0 4.0 5.0 2.2 114 chrX 20369319 intergenic not near genes chrX 20369376 intergenic not near genes chrX 20369433 intergenic not near genes chrX_13_20365001 chrX_20365001 RAL-340_100b 4307 chrX 20377325 20377329 chrX 20378817 20378821 hobo 6 1492 24.5 32.5 28.5 0.2 1496 chrX 20377325 intergenic not near genes chrX 20378073 intergenic not near genes chrX 20378821 intergenic not near genes chrX_6_20375001 chrX_20375001 RAL-340_100b 4308 chrX 20377330 20377336 chrX 20378814 20378828 hobo 5 1490 20.5 31.0 25.8 0.2 1498 chrX 20377330 intergenic not near genes chrX 20378079 intergenic not near genes chrX 20378828 intergenic not near genes chrX_5_20375001 chrX_20375001 RAL-340_100b 4309 chrX 20377337 20377346 chrX 20378800 20378822 hobo 10 1484 16.5 26.5 21.5 0.4 1485 chrX 20377337 intergenic not near genes chrX 20378080 intergenic not near genes chrX 20378822 intergenic not near genes chrX_10_20375001 chrX_20375001 RAL-340_100b 4310 chrX 20443175 20443201 chrX 20443255 20443287 7 92 9.5 5.5 7.5 0.8 112 chrX 20443175 exon CG1695 + chrX 20443231 intron CG1695 + chrX 20443287 intron CG1695 + chrX_7_20440001 chrX_20440001 RAL-340_100b 4311 chrX 20448413 20448467 chrX 20448522 20448578 6 109 3.5 2.0 2.8 1.6 165 chrX 20448413 intergenic not near genes chrX 20448496 intergenic not near genes chrX 20448578 intergenic not near genes chrX_6_20445001 chrX_20445001 RAL-340_100b 4312 chrX 20467999 20468020 chrX 20468113 20468133 8 112 2.0 0.5 1.2 3.6 134 chrX 20467999 intron GstT3 + chrX 20468066 intron GstT3 + chrX 20468133 intron GstT3 + chrX_8_20465001 chrX_20465001 RAL-340_100b 4313 chrX 20493887 20493928 chrX 20494071 20494107 13 178 0.0 3.5 1.8 4.6 220 chrX 20493887 intron RhoGAP19D - chrX 20493997 intron RhoGAP19D - chrX 20494107 intron RhoGAP19D - chrX_13_20490001 chrX_20490001 RAL-340_100b 4314 chrX 20531676 20531713 chrX 20531791 20531816 8 112 1.0 7.0 4.0 1.6 140 chrX 20531676 intergenic not near genes chrX 20531746 intergenic not near genes chrX 20531816 intergenic not near genes chrX_8_20530001 chrX_20530001 RAL-340_100b 4315 chrX 20546533 20546561 chrX 20546724 20546751 8 191 6.0 5.0 5.5 1.2 218 chrX 20546533 intron RunxB + chrX 20546642 intron RunxB + chrX 20546751 intron RunxB + chrX_8_20545001 chrX_20545001 RAL-340_100b 4316 chrX 20578055 20578111 chrX 20578159 20578204 21 101 4.5 5.5 5.0 3.5 149 chrX 20578055 intergenic not near genes chrX 20578130 intergenic not near genes chrX 20578204 intergenic not near genes chrX_21_20575001 chrX_20575001 RAL-340_100b 4317 chrX 20622821 20622868 chrX 20622945 20622963 14 122 2.0 3.0 2.5 4.0 142 chrX 20622821 intron RunxA - chrX 20622892 intron RunxA - chrX 20622963 intron RunxA - chrX_14_20620001 chrX_20620001 RAL-340_100b 4318 chrX 20635408 20635447 chrX 20635599 20635638 23 188 6.5 4.0 5.2 3.7 230 chrX 20635408 intergenic not near genes chrX 20635523 intergenic not near genes chrX 20635638 intergenic not near genes chrX_23_20635001 chrX_20635001 RAL-340_100b 4319 chrX 20662328 20662342 chrX 20662409 20662446 10 98 3.5 3.5 3.5 2.2 118 chrX 20662328 intron CG1835 + chrX 20662387 intron CG1835 + chrX 20662446 intron CG1835 + chrX_10_20660001 chrX_20660001 RAL-340_100b 4320 chrX 20708363 20708390 chrX 20708463 20708492 21 100 20.5 28.5 24.5 0.8 129 chrX 20708363 intergenic not near genes chrX 20708428 intergenic not near genes chrX 20708492 intergenic not near genes chrX_21_20705001 chrX_20705001 RAL-340_100b 4321 chrX 20710410 20710441 chrX 20710512 20710541 5 101 1.5 2.5 2.0 1.7 131 chrX 20710410 intergenic not near genes chrX 20710476 intergenic not near genes chrX 20710541 intergenic not near genes chrX_5_20710001 chrX_20710001 RAL-340_100b 4322 chrX 20791535 20791811 chrX 20791660 20791912 6 105 3.0 3.5 3.2 1.4 377 chrX 20791535 intron shakB - chrX 20791724 intron shakB - chrX 20791912 intron shakB - chrX_6_20790001 chrX_20790001 RAL-340_100b 4323 chrX 20940704 20940744 chrX 20942191 20942222 hobo 40 1490 11.0 10.5 10.8 3.4 1518 chrX 20940704 intergenic not near genes chrX 20941463 intergenic not near genes chrX 20942222 intergenic not near genes chrX_40_20940001 chrX_20940001 RAL-340_100b 4324 chrX 20948248 20948284 chrX 20948347 20948398 7 112 0.0 7.5 3.8 1.5 150 chrX 20948248 intergenic not near genes chrX 20948323 intergenic not near genes chrX 20948398 intergenic not near genes chrX_7_20945001 chrX_20945001 RAL-340_100b 4325 chrX 20981003 20981058 chrX 20981131 20981186 10 124 7.0 6.5 6.8 1.3 183 chrX 20981003 intergenic not near genes chrX 20981094 intergenic not near genes chrX 20981186 intergenic not near genes chrX_10_20980001 chrX_20980001 RAL-340_100b 4326 chrX 21020074 21020105 chrX 21020181 21020223 12 117 11.5 0.0 5.8 1.8 149 chrX 21020074 intergenic not near genes chrX 21020148 intergenic not near genes chrX 21020223 intergenic not near genes chrX_12_21020001 chrX_21020001 RAL-340_100b 4327 chrX 21029570 21029577 chrX 21029678 21029685 4 108 1.0 0.0 0.5 2.7 115 chrX 21029570 3` UTR CG1529 - chrX 21029628 3` UTR CG1529 - chrX 21029685 3` UTR CG1529 - chrX_4_21025001 chrX_21025001 RAL-340_100b 4328 chrX 21029578 21029675 chrX 21029675 21029825 6 132 0.0 0.0 0.0 6.0 247 chrX 21029578 3` UTR CG1529 - chrX 21029702 3` UTR CG1529 - chrX 21029825 3` UTR CG1529 - chrX_6_21025001 chrX_21025001 RAL-340_100b 4329 chrX 21049737 21049754 chrX 21049846 21049863 4 108 0.0 16.0 8.0 0.4 126 chrX 21049737 intergenic CG1518 - chrX 21049800 intergenic CG1518 - chrX 21049863 intergenic CG1518 - chrX_4_21045001 chrX_21045001 RAL-340_100b 4330 chrX 21049755 21049755 chrX 21049827 21049862 8 85 0.0 10.0 5.0 1.3 107 chrX 21049755 intergenic CG1518 - chrX 21049808 intergenic CG1518 - chrX 21049862 intergenic CG1518 - chrX_8_21045001 chrX_21045001 RAL-340_100b 4331 chrX 21055678 21055721 chrX 21055779 21055807 10 100 1.5 3.5 2.5 2.9 129 chrX 21055678 intron bves + chrX 21055742 intron bves + chrX 21055807 intron bves + chrX_10_21055001 chrX_21055001 RAL-340_100b 4332 chrX 21061833 21061866 chrX 21062347 21062376 roo 6 504 15.5 15.0 15.2 0.4 543 chrX 21061833 intron bves + chrX 21062104 intron bves + chrX 21062376 intron,3` UTR bves +,CG32512 - chrX_6_21060001 chrX_21060001 RAL-340_100b 4333 chrX 21061871 21061896 chrX 21062370 21062401 roo 19 508 8.5 22.0 15.2 1.2 530 chrX 21061871 intron bves + chrX 21062136 intron bves + chrX 21062401 intron,3` UTR bves +,CG32512 - chrX_19_21060001 chrX_21060001 RAL-340_100b 4334 chrX 21076301 21076345 chrX 21076405 21076419 12 92 5.5 0.5 3.0 3.0 118 chrX 21076301 intron bves + chrX 21076360 intron bves + chrX 21076419 intron bves + chrX_12_21075001 chrX_21075001 RAL-340_100b 4335 chrX 21077570 21077615 chrX 21077684 21077729 10 114 5.5 8.0 6.8 1.3 159 chrX 21077570 intron bves + chrX 21077650 intron bves + chrX 21077729 intron bves + chrX_10_21075001 chrX_21075001 RAL-340_100b 4336 chrX 21078757 21078772 chrX 21078852 21078865 10 100 4.5 3.5 4.0 2.0 108 chrX 21078757 intron bves + chrX 21078811 intron bves + chrX 21078865 intron bves + chrX_10_21075001 chrX_21075001 RAL-340_100b 4337 chrX 21084220 21084226 chrX 21084454 21084460 4 233 20.5 4.0 12.2 0.3 240 chrX 21084220 intergenic not near genes chrX 21084340 intergenic not near genes chrX 21084460 intergenic not near genes chrX_4_21080001 chrX_21080001 RAL-340_100b 4338 chrX 21084238 21084272 chrX 21084451 21084506 19 228 5.0 4.0 4.5 3.5 268 chrX 21084238 intergenic not near genes chrX 21084372 intergenic not near genes chrX 21084506 intergenic not near genes chrX_19_21080001 chrX_21080001 RAL-340_100b 4339 chrX 21086116 21086137 chrX 21087170 21087191 jockey 11 1054 8.0 5.0 6.5 1.5 1075 chrX 21086116 intergenic not near genes chrX 21086654 intergenic not near genes chrX 21087191 intergenic not near genes chrX_11_21085001 chrX_21085001 RAL-340_100b 4340 chrX 21086139 21086157 chrX 21087161 21087211 jockey 8 1049 6.5 2.5 4.5 1.5 1072 chrX 21086139 intergenic not near genes chrX 21086675 intergenic not near genes chrX 21087211 intergenic not near genes chrX_8_21085001 chrX_21085001 RAL-340_100b 4341 chrX 21088018 21088053 chrX 21088175 21088210 14 154 7.5 7.0 7.2 1.7 192 chrX 21088018 intergenic not near genes chrX 21088114 intergenic not near genes chrX 21088210 intergenic not near genes chrX_14_21085001 chrX_21085001 RAL-340_100b 4342 chrX 21088056 21088073 chrX 21088172 21088217 12 147 6.0 6.0 6.0 1.7 161 chrX 21088056 intergenic not near genes chrX 21088136 intergenic not near genes chrX 21088217 intergenic not near genes chrX_12_21085001 chrX_21085001 RAL-340_100b 4343 chrX 21166115 21166163 chrX 21166218 21166269 8 104 1.5 5.5 3.5 1.8 154 chrX 21166115 intergenic not near genes chrX 21166192 intergenic not near genes chrX 21166269 intergenic not near genes chrX_8_21165001 chrX_21165001 RAL-340_100b 4344 chrX 21197036 21197056 chrX 21197139 21197159 8 100 10.5 4.5 7.5 0.9 123 chrX 21197036 intergenic not near genes chrX 21197098 intergenic not near genes chrX 21197159 intergenic not near genes chrX_8_21195001 chrX_21195001 RAL-340_100b 4345 chrX 21197057 21197089 chrX 21197134 21197142 19 91 3.5 3.5 3.5 4.2 85 chrX 21197057 intergenic not near genes chrX 21197100 intergenic not near genes chrX 21197142 intergenic not near genes chrX_19_21195001 chrX_21195001 RAL-340_100b 4346 chrX 21222648 21222677 chrX 21222744 21222750 6 95 2.0 9.5 5.8 0.9 102 chrX 21222648 intron CG32521 - chrX 21222699 intron CG32521 - chrX 21222750 intron CG32521 - chrX_6_21220001 chrX_21220001 RAL-340_100b 4347 chrX 21264707 21264760 chrX 21264808 21264819 26 98 12.0 6.0 9.0 2.6 112 chrX 21264707 intron CG32521 - chrX 21264763 intron CG32521 - chrX 21264819 intron CG32521 - chrX_26_21260001 chrX_21260001 RAL-340_100b 4348 chrX 21328092 21328141 chrX 21328228 21328277 11 134 2.5 1.5 2.0 3.7 185 chrX 21328092 3` UTR CG1486 + chrX 21328184 intergenic CG1486 +,tty - chrX 21328277 intergenic CG1486 +,tty - chrX_11_21325001 chrX_21325001 RAL-340_100b 4349 chrX 21358051 21358096 chrX 21358156 21358196 17 104 5.5 5.5 5.5 2.6 145 chrX 21358051 intergenic sol +,Sep1 + chrX 21358124 intergenic Sep1 +,sol + chrX 21358196 intergenic Sep1 +,sol + chrX_17_21355001 chrX_21355001 RAL-340_100b 4350 chrX 21412404 21412428 chrX 21412522 21412543 5 117 3.5 4.0 3.8 1.0 139 chrX 21412404 intergenic not near genes chrX 21412474 intergenic not near genes chrX 21412543 intergenic not near genes chrX_5_21410001 chrX_21410001 RAL-340_100b 4351 chrX 9845361 9845361 chrX 21435831 21435886 4 11590503 93.0 28.0 60.5 0.1 11590525 chrX 9845361 intron CG32698 + chrX 15640624 intergenic not near genes chrX 21435886 intron CG42343 - chrX_4_15640001 chrX_15640001 RAL-340_100b 4352 chrX 21455212 21455241 chrX 21455392 21455453 13 207 6.0 0.0 3.0 3.2 241 chrX 21455212 intron CG42343 - chrX 21455332 intron CG42343 - chrX 21455453 intron CG42343 - chrX_13_21455001 chrX_21455001 RAL-340_100b 4353 chrX 21458679 21458719 chrX 21464140 21464175 Ivk 20 5458 4.5 8.5 6.5 2.7 5496 chrX 21458679 intergenic not near genes chrX 21461427 intergenic not near genes chrX 21464175 intergenic not near genes chrX_20_21460001 chrX_21460001 RAL-340_100b 4354 chrX 21500552 21500570 chrX 21500762 21500795 8 223 2.5 6.0 4.2 1.5 243 chrX 21500552 intron CR45082 - chrX 21500674 intron CR45082 - chrX 21500795 intron CR45082 - chrX_8_21500001 chrX_21500001 RAL-340_100b 4355 chrX 21516985 21517014 chrX 21517074 21517118 14 96 7.0 9.0 8.0 1.6 133 chrX 21516985 intron CR45082 - chrX 21517052 intron CR45082 - chrX 21517118 intron CR45082 - chrX_14_21515001 chrX_21515001 RAL-340_100b 4356 chrX 21573867 21573916 chrX 21573979 21574018 14 107 7.0 8.0 7.5 1.6 151 chrX 21573867 intergenic not near genes chrX 21573942 intergenic not near genes chrX 21574018 intergenic not near genes chrX_14_21570001 chrX_21570001 RAL-340_100b 4357 chrX 21581533 21581574 chrX 21581639 21581680 20 105 1.0 1.0 1.0 10.0 147 chrX 21581533 intergenic not near genes chrX 21581606 intergenic not near genes chrX 21581680 intergenic not near genes chrX_20_21580001 chrX_21580001 RAL-340_100b 4358 chrX 21668235 21668284 chrX 21668345 21668394 23 106 44.0 51.0 47.5 0.5 159 chrX 21668235 intergenic not near genes chrX 21668314 intergenic not near genes chrX 21668394 intergenic not near genes chrX_23_21665001 chrX_21665001 RAL-340_100b 4359 chrX 22478884 22478898 chrX 22479031 22479056 5 155 0.0 9.0 4.5 0.9 172 chrX 22478884 intron CG12576 - chrX 22478970 intron CG12576 - chrX 22479056 intron CG12576 - chrX_5_22475001 chrX_22475001 RAL-340_100b 4360 chrX 22564564 22564583 chrX 22575111 22575130 jockey 10 10547 23.5 16.0 19.8 0.5 10566 chrX 22564564 intergenic not near genes chrX 22569847 intergenic not near genes chrX 22575130 intergenic not near genes chrX_10_22565001 chrX_22565001 RAL-340_100b 4361 chrX 22584318 22584360 chrX 22584434 22584476 10 116 3.0 7.5 5.2 1.6 158 chrX 22584318 intron Cda4 - chrX 22584397 intron Cda4 - chrX 22584476 intron Cda4 - chrX_10_22580001 chrX_22580001 RAL-340_100b 4362 chrX 22585503 22585538 chrX 22585611 22585647 4 108 5.0 3.5 4.2 0.8 144 chrX 22585503 intron Cda4 - chrX 22585575 intron Cda4 - chrX 22585647 intron Cda4 - chrX_4_22585001 chrX_22585001 RAL-340_100b 4363 chrX 22585911 22585920 chrX 22586015 22586031 6 109 0.5 6.0 3.2 1.4 120 chrX 22585911 intron Cda4 - chrX 22585971 intron Cda4 - chrX 22586031 intron Cda4 - chrX_6_22585001 chrX_22585001 RAL-340_100b 4364 chrX 22637513 22637520 chrX 22637616 22637623 5 103 11.0 2.0 6.5 0.7 110 chrX 22637513 intergenic not near genes chrX 22637568 intergenic not near genes chrX 22637623 intergenic not near genes chrX_5_22635001 chrX_22635001 RAL-340_100b 4365 chrX 22646508 22646524 chrX 22646634 22646648 4 126 10.0 0.0 5.0 0.7 140 chrX 22646508 intergenic not near genes chrX 22646578 intergenic not near genes chrX 22646648 intergenic not near genes chrX_4_22645001 chrX_22645001 RAL-340_100b 4366 chrX 22660560 22660600 chrX 22660660 22660709 12 107 2.5 8.5 5.5 1.8 149 chrX 22660560 intron CR44997 + chrX 22660634 intron CR44997 + chrX 22660709 intron CR44997 + chrX_12_22660001 chrX_22660001 RAL-340_100b 4367 chrX 22663881 22663935 chrX 22663998 22664052 12 106 0.0 7.5 3.8 2.5 171 chrX 22663881 intron CR44997 + chrX 22663966 intron CR44997 + chrX 22664052 intron CR44997 + chrX_12_22660001 chrX_22660001 RAL-340_100b 4368 chrX 22677276 22677321 chrX 22677505 22677554 13 233 5.0 1.5 3.2 3.1 278 chrX 22677276 intron CR44997 + chrX 22677415 intron CR44997 + chrX 22677554 intron CR44997 + chrX_13_22675001 chrX_22675001 RAL-340_100b 4369 chrX 22681464 22681514 chrX 22688941 22688980 HMS-Beagle2 7 7479 1.0 6.0 3.5 1.6 7516 chrX 22681464 intron CR44997 + chrX 22685222 intron CR44997 + chrX 22688980 intron CR44997 + chrX_7_22685001 chrX_22685001 RAL-340_100b 4370 chrX 22692446 22692483 chrX 22692549 22692570 9 98 15.5 6.0 10.8 0.8 124 chrX 22692446 intron CR44997 + chrX 22692508 intron CR44997 + chrX 22692570 intron CR44997 + chrX_9_22690001 chrX_22690001 RAL-340_100b 4371 chrX 22697482 22697514 chrX 22701793 22701831 Juan 10 4320 14.0 13.5 13.8 0.7 4349 chrX 22697482 intron CR44997 + chrX 22699656 intron CR44997 + chrX 22701831 intron CR44997 + chrX_10_22695001 chrX_22695001 RAL-340_100b 4372 chrX 22771483 22771535 chrX 22774799 22774830 297 13 3309 7.0 11.0 9.0 1.3 3347 chrX 22771483 intron CR44997 + chrX 22773156 intron CR44997 + chrX 22774830 intron CR44997 + chrX_13_22770001 chrX_22770001 RAL-340_100b 4373 chrX 22870845 22870898 chrX 22870961 22870991 7 109 5.0 6.0 5.5 1.1 146 chrX 22870845 intron,3` UTR CG42346 +,CR43656 - chrX 22870918 intron,3` UTR CG42346 +,CR43656 - chrX 22870991 intron,3` UTR CG42346 +,CR43656 - chrX_7_22870001 chrX_22870001 RAL-340_100b 4374 chrX 22922496 22922546 chrX 22922601 22922626 20 99 3.5 9.0 6.2 2.8 130 chrX 22922496 intergenic not near genes chrX 22922561 intergenic not near genes chrX 22922626 intergenic not near genes chrX_20_22920001 chrX_22920001 RAL-340_100b 4375 chrX 22960788 22960798 chrX 22961009 22961025 5 226 0.5 3.0 1.8 1.8 237 chrX 22960788 3` UTR CG40485 - chrX 22960906 3` UTR CG40485 - chrX 22961025 3` UTR CG40485 - chrX_5_22960001 chrX_22960001 RAL-340_100b 4376 chrX 22987085 22987132 chrX 22989764 22989801 Burdock 17 2680 4.5 8.0 6.2 2.4 2716 chrX 22987085 intron,intron stnA -,stnB - chrX 22988443 intron,intron stnA -,stnB - chrX 22989801 intron,intron stnA -,stnB - chrX_17_22985001 chrX_22985001 RAL-340_100b 4377 chrX 22992387 22992404 chrX 22992543 22992560 6 155 10.0 11.0 10.5 0.5 173 chrX 22992387 intron,intron stnA -,stnB - chrX 22992474 intron,intron stnA -,stnB - chrX 22992560 intron,intron stnA -,stnB - chrX_6_22990001 chrX_22990001 RAL-340_100b 4378 chrX 22996311 22996339 chrX 23003568 23003596 roo 14 7256 9.0 12.5 10.8 1.2 7285 chrX 22996311 intron,intron stnA -,stnB - chrX 22999954 intron,intron stnA -,stnB - chrX 23003596 intron,intron stnA -,stnB - chrX_14_22995001 chrX_22995001 RAL-340_100b 4379 chrX 22967493 22967583 chrX 23154543 23154688 diver 4 187074 15.5 22.5 19.0 0.2 187195 chrX 22967493 intergenic not near genes chrX 23061090 intergenic not near genes chrX 23154688 intergenic not near genes chrX_4_23060001 chrX_23060001 RAL-340_100b 4380 chrX 16243795 16243798 chrX 23461080 23461081 8 7217285 27.5 31.5 29.5 0.3 7217286 chrX 16243795 intergenic not near genes chrX 19852438 exon Nup205 + chrX 23461081 intergenic not near genes chrX_8_19850001 chrX_19850001 RAL-340_100b 4381 chrY 655939 655948 chrY 656140 656149 5 200 1.5 1.0 1.2 2.3 210 chrY 655939 intron kl-2 + chrY 656044 intron kl-2 + chrY 656149 exon kl-2 + chrY_5_655001 chrY_655001 RAL-340_100b 4382 chrY 975789 975820 chrY 975871 976010 16 131 189.0 201.0 195.0 0.1 221 chrY 975789 intergenic not near genes chrY 975900 intergenic not near genes chrY 976010 intergenic not near genes chrY_16_975001 chrY_975001 RAL-340_100b 4383 chrY 1419882 1419922 chrY 1420156 1420169 5 260 21.0 14.0 17.5 0.3 287 chrY 1419882 intergenic not near genes chrY 1420026 intergenic not near genes chrY 1420169 intergenic not near genes chrY_5_1420001 chrY_1420001 RAL-340_100b 4384 chrY 381076 381113 chrY 1618887 1618897 invader6 5 1237786 3.0 0.0 1.5 2.0 1237821 chrY 381076 intergenic not near genes chrY 999986 intergenic Su(Ste):CR42438 - chrY 1618897 intergenic not near genes chrY_5_995001 chrY_995001 RAL-340_100b 4385 chrY 3664984 3665004 chrY 3665113 3665133 4 129 1.5 2.0 1.8 1.4 149 chrY 3664984 intergenic CG40948 + chrY 3665058 intergenic not near genes chrY 3665133 intergenic not near genes chrY_4_3665001 chrY_3665001 RAL-340_100b