SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 47461 47488 chr2L 52565 52587 jockey 7 5100 3.0 2.5 2.8 1.8 5126 chr2L 47461 intron Cda5 - chr2L 50024 intron Cda5 - chr2L 52587 intron Cda5 - chr2L_7_50001 chr2L_50001 RAL-338 2 chr2L 91178 91209 chr2L 91251 91284 4 75 5.5 6.5 6.0 0.6 106 chr2L 91178 intergenic not near genes chr2L 91231 intergenic not near genes chr2L 91284 intergenic not near genes chr2L_4_90001 chr2L_90001 RAL-338 3 chr2L 127509 127519 chr2L 127602 127608 4 93 8.0 6.5 7.2 0.5 99 chr2L 127509 intron,intron CG11455 +,CG3164 - chr2L 127558 intron,intron CG11455 +,CG3164 - chr2L 127608 intron,intron CG11455 +,CG3164 - chr2L_4_125001 chr2L_125001 RAL-338 4 chr2L 180294 180315 chr2L 180462 180483 6 167 5.0 6.0 5.5 0.9 189 chr2L 180294 intron spen + chr2L 180388 intron spen + chr2L 180483 intron spen + chr2L_6_180001 chr2L_180001 RAL-338 5 chr2L 263302 263517 chr2L 263448 263607 6 127 5.5 0.5 3.0 1.5 305 chr2L 263302 intron,3` UTR CG3645 -,CG17075 - chr2L 263454 intron,3` UTR CG3645 -,CG17075 - chr2L 263607 intron,3` UTR CG3645 -,CG17075 - chr2L_6_260001 chr2L_260001 RAL-338 6 chr2L 297694 297715 chr2L 297794 297815 4 100 2.0 5.0 3.5 0.9 121 chr2L 297694 intergenic Pi3K21B +,Hop + chr2L 297754 intergenic Pi3K21B +,Hop + chr2L 297815 intergenic Pi3K21B +,Hop + chr2L_4_295001 chr2L_295001 RAL-338 7 chr2L 319909 319935 chr2L 319994 320020 8 85 5.0 6.0 5.5 1.2 111 chr2L 319909 intron Plc21C + chr2L 319964 intron Plc21C + chr2L 320020 intron Plc21C + chr2L_8_315001 chr2L_315001 RAL-338 8 chr2L 318768 318795 chr2L 323425 323452 5 4659 14.5 11.0 12.8 0.4 4684 chr2L 318768 intron,exon Plc21C +,CG11912 - chr2L 321110 intron,exon Plc21C +,CG11911 - chr2L 323452 intron Plc21C + chr2L_5_320001 chr2L_320001 RAL-338 9 chr2L 489544 489568 chr2L 489629 489647 5 82 8.5 8.0 8.2 0.5 103 chr2L 489544 intron ush + chr2L 489596 intron ush + chr2L 489647 intron ush + chr2L_5_485001 chr2L_485001 RAL-338 10 chr2L 544646 544860 chr2L 544725 544943 7 80 2.5 3.0 2.8 1.8 297 chr2L 544646 5` UTR Spp - chr2L 544794 intergenic Ets21C -,Spp -,nAChRbeta3 + chr2L 544943 3` UTR Ets21C - chr2L_7_540001 chr2L_540001 RAL-338 11 chr2L 597411 597426 chr2L 597809 597838 4 410 7.5 6.0 6.8 0.5 427 chr2L 597411 intergenic not near genes chr2L 597624 intergenic not near genes chr2L 597838 intergenic not near genes chr2L_4_595001 chr2L_595001 RAL-338 12 chr2L 686918 686952 chr2L 695957 695991 roo 6 9039 1.0 3.0 2.0 2.0 9073 chr2L 686918 intron ds - chr2L 691454 intron ds - chr2L 695991 intron ds - chr2L_6_690001 chr2L_690001 RAL-338 13 chr2L 748209 748232 chr2L 748287 748311 7 79 7.5 8.0 7.8 0.8 102 chr2L 748209 intergenic not near genes chr2L 748260 intergenic not near genes chr2L 748311 intergenic not near genes chr2L_7_745001 chr2L_745001 RAL-338 14 chr2L 764575 764582 chr2L 764656 764663 5 88 1.0 3.0 2.0 1.7 88 chr2L 764575 intergenic not near genes chr2L 764619 intergenic not near genes chr2L 764663 intergenic not near genes chr2L_5_760001 chr2L_760001 RAL-338 15 chr2L 770466 770479 chr2L 772247 772260 Bari1 5 1780 2.0 2.5 2.2 1.6 1794 chr2L 770466 intergenic not near genes chr2L 771363 intergenic not near genes chr2L 772260 intergenic CR44614 + chr2L_5_770001 chr2L_770001 RAL-338 16 chr2L 770481 770494 chr2L 772244 772270 Bari1 6 1777 1.5 2.5 2.0 2.0 1789 chr2L 770481 intergenic not near genes chr2L 771376 intergenic not near genes chr2L 772270 intergenic CR44614 + chr2L_6_770001 chr2L_770001 RAL-338 17 chr2L 976887 976908 chr2L 984523 984543 roo 4 7635 0.5 0.5 0.5 2.7 7656 chr2L 976887 intergenic not near genes chr2L 980715 intergenic not near genes chr2L 984543 intergenic not near genes chr2L_4_980001 chr2L_980001 RAL-338 18 chr2L 1038623 1038640 chr2L 1038701 1038718 5 78 6.5 7.5 7.0 0.6 95 chr2L 1038623 intron,3` UTR IA-2 -,CG4415 + chr2L 1038670 intron,3` UTR IA-2 -,CG4415 + chr2L 1038718 intron IA-2 - chr2L_5_1035001 chr2L_1035001 RAL-338 19 chr2L 1220130 1220153 chr2L 1227596 1227619 blood 6 7466 3.0 0.5 1.8 2.1 7489 chr2L 1220130 intron CG42329 + chr2L 1223874 intron CG42329 + chr2L 1227619 intron CG42329 + chr2L_6_1220001 chr2L_1220001 RAL-338 20 chr2L 1312885 1312897 chr2L 1312972 1312983 5 85 2.0 5.0 3.5 1.1 98 chr2L 1312885 intergenic not near genes chr2L 1312934 intergenic not near genes chr2L 1312983 intergenic not near genes chr2L_5_1310001 chr2L_1310001 RAL-338 21 chr2L 1415116 1415134 chr2L 1415358 1415376 4 242 2.0 4.5 3.2 1.0 260 chr2L 1415116 intron lea - chr2L 1415246 intron lea - chr2L 1415376 intron lea - chr2L_4_1415001 chr2L_1415001 RAL-338 22 chr2L 1446595 1446626 chr2L 1446767 1446800 4 174 4.0 7.5 5.8 0.6 205 chr2L 1446595 intergenic not near genes chr2L 1446698 intergenic not near genes chr2L 1446800 intergenic not near genes chr2L_4_1445001 chr2L_1445001 RAL-338 23 chr2L 1454047 1454070 chr2L 1454122 1454147 4 78 9.5 7.5 8.5 0.4 100 chr2L 1454047 intergenic not near genes chr2L 1454097 intergenic not near genes chr2L 1454147 intergenic not near genes chr2L_4_1450001 chr2L_1450001 RAL-338 24 chr2L 1508054 1508263 chr2L 1508136 1508334 4 79 6.0 4.5 5.2 0.6 280 chr2L 1508054 intergenic not near genes chr2L 1508194 intergenic not near genes chr2L 1508334 intergenic not near genes chr2L_4_1505001 chr2L_1505001 RAL-338 25 chr2L 1570688 1570717 chr2L 1573560 1573589 F-element 9 2872 2.5 3.0 2.8 2.4 2901 chr2L 1570688 intron haf + chr2L 1572138 intron haf + chr2L 1573589 intron haf + chr2L_9_1570001 chr2L_1570001 RAL-338 26 chr2L 1596656 1596679 chr2L 1596740 1596762 5 83 6.0 5.0 5.5 0.8 106 chr2L 1596656 intron,intron haf +,CG31935 - chr2L 1596709 intron,intron haf +,CG31935 - chr2L 1596762 intron,intron haf +,CG31935 - chr2L_5_1595001 chr2L_1595001 RAL-338 27 chr2L 1711357 1711386 chr2L 1711680 1711710 mdg3 10 323 1.0 5.0 3.0 2.5 353 chr2L 1711357 3` UTR,3` UTR mRpL48 +,frtz - chr2L 1711534 3` UTR frtz - chr2L 1711710 3` UTR frtz - chr2L_10_1710001 chr2L_1710001 RAL-338 28 chr2L 1828402 1828420 chr2L 1828485 1828504 4 84 9.5 12.0 10.8 0.3 102 chr2L 1828402 intergenic not near genes chr2L 1828453 intergenic not near genes chr2L 1828504 intergenic not near genes chr2L_4_1825001 chr2L_1825001 RAL-338 29 chr2L 1994591 1994606 chr2L 1994821 1994836 5 230 8.0 7.0 7.5 0.6 245 chr2L 1994591 intergenic not near genes chr2L 1994714 intergenic not near genes chr2L 1994836 intergenic not near genes chr2L_5_1990001 chr2L_1990001 RAL-338 30 chr2L 2100380 2100408 chr2L 2109529 2109558 roo 6 9149 3.0 0.5 1.8 2.1 9178 chr2L 2100380 intron dpr3 - chr2L 2104969 intron dpr3 - chr2L 2109558 intron dpr3 - chr2L_6_2100001 chr2L_2100001 RAL-338 31 chr2L 2112129 2112132 chr2L 2119786 2119794 opus 4 7661 1.5 5.0 3.2 1.0 7665 chr2L 2112129 intergenic not near genes chr2L 2115962 intergenic not near genes chr2L 2119794 intergenic not near genes chr2L_4_2115001 chr2L_2115001 RAL-338 32 chr2L 2250417 2250429 chr2L 2251184 2251196 4 767 3.5 0.0 1.8 1.4 779 chr2L 2250417 intergenic Ser12 - chr2L 2250806 exon Ser12 - chr2L 2251196 exon Ser12 - chr2L_4_2250001 chr2L_2250001 RAL-338 33 chr2L 2261071 2261104 chr2L 2261289 2261314 6 214 5.5 10.5 8.0 0.7 243 chr2L 2261071 intergenic not near genes chr2L 2261192 intergenic not near genes chr2L 2261314 intergenic not near genes chr2L_6_2260001 chr2L_2260001 RAL-338 34 chr2L 2311077 2311088 chr2L 2311173 2311184 5 96 2.0 0.0 1.0 2.5 107 chr2L 2311077 intron CG9967 - chr2L 2311130 intron CG9967 - chr2L 2311184 intron CG9967 - chr2L_5_2310001 chr2L_2310001 RAL-338 35 chr2L 2330877 2330889 chr2L 2330966 2330978 4 89 6.0 6.0 6.0 0.6 101 chr2L 2330877 intron,intron CG9967 -,eys + chr2L 2330928 intron,intron CG9967 -,eys + chr2L 2330978 intron,intron CG9967 -,eys + chr2L_4_2330001 chr2L_2330001 RAL-338 36 chr2L 2503545 2503568 chr2L 2503628 2503655 8 88 3.5 5.5 4.5 1.5 110 chr2L 2503545 intergenic not near genes chr2L 2503600 intergenic not near genes chr2L 2503655 intergenic not near genes chr2L_8_2500001 chr2L_2500001 RAL-338 37 chr2L 2519810 2519839 chr2L 2519897 2519926 5 87 2.5 2.5 2.5 1.4 116 chr2L 2519810 intergenic not near genes chr2L 2519868 intergenic not near genes chr2L 2519926 intergenic not near genes chr2L_5_2515001 chr2L_2515001 RAL-338 38 chr2L 2653059 2653085 chr2L 2654693 2654709 5 1626 13.5 15.0 14.2 0.3 1650 chr2L 2653059 5` UTR Prosbeta4R1 + chr2L 2653884 3` UTR Prosbeta4R1 + chr2L 2654709 exon Or23a + chr2L_5_2650001 chr2L_2650001 RAL-338 39 chr2L 2661196 2661231 chr2L 2663034 2663069 I-element 8 1835 3.0 2.5 2.8 2.1 1873 chr2L 2661196 intergenic not near genes chr2L 2662132 intergenic not near genes chr2L 2663069 intergenic not near genes chr2L_8_2660001 chr2L_2660001 RAL-338 40 chr2L 2667627 2667658 chr2L 2667706 2667736 5 76 9.0 6.5 7.8 0.6 109 chr2L 2667627 intergenic not near genes chr2L 2667682 intergenic not near genes chr2L 2667736 intergenic not near genes chr2L_5_2665001 chr2L_2665001 RAL-338 41 chr2L 2782833 2782854 chr2L 2782910 2782923 4 71 6.0 5.5 5.8 0.6 90 chr2L 2782833 3` UTR Syt1 - chr2L 2782878 intron Syt1 - chr2L 2782923 intron Syt1 - chr2L_4_2780001 chr2L_2780001 RAL-338 42 chr2L 3073010 3073063 chr2L 3078233 3078266 copia 8 5213 1.0 1.5 1.2 3.6 5256 chr2L 3073010 intron toc - chr2L 3075638 intron toc - chr2L 3078266 intron toc - chr2L_8_3075001 chr2L_3075001 RAL-338 43 chr2L 3147284 3147306 chr2L 3147361 3147382 4 76 6.5 6.0 6.2 0.6 98 chr2L 3147284 3` UTR Mad - chr2L 3147333 3` UTR Mad - chr2L 3147382 3` UTR Mad - chr2L_4_3145001 chr2L_3145001 RAL-338 44 chr2L 3171186 3171201 chr2L 3171490 3171504 4 304 3.5 5.0 4.2 0.8 318 chr2L 3171186 intergenic CG44002 - chr2L 3171345 intergenic CG44002 - chr2L 3171504 intergenic CG44002 - chr2L_4_3170001 chr2L_3170001 RAL-338 45 chr2L 3202743 3202772 chr2L 3210172 3210195 mdg1 6 7427 1.0 2.0 1.5 2.4 7452 chr2L 3202743 intergenic not near genes chr2L 3206469 intergenic not near genes chr2L 3210195 intergenic CR45336 + chr2L_6_3205001 chr2L_3205001 RAL-338 46 chr2L 3251497 3251512 chr2L 3259062 3259077 springer 4 7565 2.5 2.0 2.2 1.2 7580 chr2L 3251497 intergenic not near genes chr2L 3255287 intergenic not near genes chr2L 3259077 intergenic not near genes chr2L_4_3255001 chr2L_3255001 RAL-338 47 chr2L 3271154 3271182 chr2L 3271276 3271298 6 120 8.0 3.5 5.8 0.9 144 chr2L 3271154 exon CG3347 + chr2L 3271226 exon CG3347 + chr2L 3271298 exon CG3347 + chr2L_6_3270001 chr2L_3270001 RAL-338 48 chr2L 3314701 3314729 chr2L 3314777 3314805 4 76 4.5 3.5 4.0 0.8 104 chr2L 3314701 intron CG3277 + chr2L 3314753 intron CG3277 + chr2L 3314805 intron CG3277 + chr2L_4_3310001 chr2L_3310001 RAL-338 49 chr2L 3395031 3395049 chr2L 3395113 3395131 4 81 1.5 3.0 2.2 1.2 100 chr2L 3395031 intergenic not near genes chr2L 3395081 intergenic not near genes chr2L 3395131 intergenic not near genes chr2L_4_3395001 chr2L_3395001 RAL-338 50 chr2L 3649794 3649819 chr2L 3654996 3655022 copia 4 5202 1.0 3.5 2.2 1.2 5228 chr2L 3649794 intron for - chr2L 3652408 intron for - chr2L 3655022 intron for - chr2L_4_3650001 chr2L_3650001 RAL-338 51 chr2L 3915516 3915540 chr2L 3916317 3916341 4 800 6.5 4.0 5.2 0.6 825 chr2L 3915516 intron fred - chr2L 3915928 intron fred - chr2L 3916341 intron fred - chr2L_4_3915001 chr2L_3915001 RAL-338 52 chr2L 3943792 3943815 chr2L 3943883 3943906 6 90 1.0 1.0 1.0 3.0 114 chr2L 3943792 intron fred - chr2L 3943849 intron fred - chr2L 3943906 intron fred - chr2L_6_3940001 chr2L_3940001 RAL-338 53 chr2L 4008268 4008295 chr2L 4008353 4008379 4 84 1.0 0.0 0.5 2.7 111 chr2L 4008268 intergenic CG43773 +,CG43774 + chr2L 4008324 intergenic CG43774 +,CG43773 + chr2L 4008379 intergenic CG43774 +,CG43773 + chr2L_4_4005001 chr2L_4005001 RAL-338 54 chr2L 4066042 4066060 chr2L 4068864 4068884 Juan 7 2824 4.5 3.0 3.8 1.5 2842 chr2L 4066042 intron ed + chr2L 4067463 intron ed + chr2L 4068884 intron ed + chr2L_7_4065001 chr2L_4065001 RAL-338 55 chr2L 4166382 4166403 chr2L 4166465 4166486 5 82 3.0 2.5 2.8 1.3 104 chr2L 4166382 intergenic Or24a - chr2L 4166434 intergenic Or24a - chr2L 4166486 intergenic Or24a - chr2L_5_4165001 chr2L_4165001 RAL-338 56 chr2L 4351472 4351496 chr2L 4351548 4351571 8 75 3.5 2.0 2.8 2.1 99 chr2L 4351472 intergenic CR44700 + chr2L 4351522 intergenic CR44700 + chr2L 4351571 intergenic CR44700 + chr2L_8_4350001 chr2L_4350001 RAL-338 57 chr2L 4487264 4487272 chr2L 4487362 4487372 4 100 4.5 7.5 6.0 0.6 108 chr2L 4487264 intron dp - chr2L 4487318 intron dp - chr2L 4487372 intron dp - chr2L_4_4485001 chr2L_4485001 RAL-338 58 chr2L 4601703 4601736 chr2L 4609144 4609177 mdg1 8 7441 0.5 6.0 3.2 1.9 7474 chr2L 4601703 intron dp - chr2L 4605440 intron dp - chr2L 4609177 intron dp - chr2L_8_4605001 chr2L_4605001 RAL-338 59 chr2L 4784054 4784065 chr2L 4784142 4784151 5 96 6.5 7.0 6.8 0.6 97 chr2L 4784054 intron CG15630 - chr2L 4784102 intron CG15630 - chr2L 4784151 intron CG15630 - chr2L_5_4780001 chr2L_4780001 RAL-338 60 chr2L 4858470 4858485 chr2L 4858556 4858573 4 88 0.0 2.0 1.0 2.0 103 chr2L 4858470 intron pog + chr2L 4858522 intron pog + chr2L 4858573 intron pog + chr2L_4_4855001 chr2L_4855001 RAL-338 61 chr2L 4953520 4953543 chr2L 4953760 4953783 pogo 5 240 0.5 1.0 0.8 2.8 263 chr2L 4953520 intergenic Jon25Bii - chr2L 4953652 intergenic not near genes chr2L 4953783 intergenic Jon25Bi - chr2L_5_4950001 chr2L_4950001 RAL-338 62 chr2L 5511334 5511349 chr2L 5511414 5511432 4 82 4.5 3.5 4.0 0.8 98 chr2L 5511334 intergenic not near genes chr2L 5511383 intergenic not near genes chr2L 5511432 intergenic not near genes chr2L_4_5510001 chr2L_5510001 RAL-338 63 chr2L 5515212 5515242 chr2L 5515315 5515345 4 103 6.0 3.0 4.5 0.7 133 chr2L 5515212 intergenic not near genes chr2L 5515278 intergenic not near genes chr2L 5515345 intergenic not near genes chr2L_4_5515001 chr2L_5515001 RAL-338 64 chr2L 5594325 5594353 chr2L 5594417 5594445 4 92 3.5 2.5 3.0 1.0 120 chr2L 5594325 intergenic not near genes chr2L 5594385 intergenic not near genes chr2L 5594445 intergenic not near genes chr2L_4_5590001 chr2L_5590001 RAL-338 65 chr2L 5654797 5654828 chr2L 5654906 5654937 8 106 6.5 4.0 5.2 1.3 140 chr2L 5654797 intron CG31646 - chr2L 5654867 intron CG31646 - chr2L 5654937 intron CG31646 - chr2L_8_5650001 chr2L_5650001 RAL-338 66 chr2L 5982162 5982166 chr2L 5982215 5982231 4 69 9.0 7.0 8.0 0.4 69 chr2L 5982162 intron eIF-4a + chr2L 5982196 intron eIF-4a + chr2L 5982231 intron eIF-4a + chr2L_4_5980001 chr2L_5980001 RAL-338 67 chr2L 6021625 6021640 chr2L 6021699 6021718 4 77 8.5 3.5 6.0 0.6 93 chr2L 6021625 exon CG13996 + chr2L 6021672 3` UTR CG13996 + chr2L 6021718 3` UTR CG13996 + chr2L_4_6020001 chr2L_6020001 RAL-338 68 chr2L 6153712 6153720 chr2L 6153798 6153816 4 93 7.5 8.5 8.0 0.4 104 chr2L 6153712 intergenic Muc26B +,CG31639 - chr2L 6153764 intergenic Muc26B +,CG31639 - chr2L 6153816 intergenic CG31639 -,Muc26B + chr2L_4_6150001 chr2L_6150001 RAL-338 69 chr2L 6300576 6300590 chr2L 6300662 6300676 5 86 1.0 2.5 1.8 1.8 100 chr2L 6300576 intron Ddr + chr2L 6300626 intron Ddr + chr2L 6300676 intron Ddr + chr2L_5_6300001 chr2L_6300001 RAL-338 70 chr2L 6363161 6363183 chr2L 6366071 6366108 Burdock 7 2919 2.5 1.5 2.0 2.3 2947 chr2L 6363161 intergenic not near genes chr2L 6364634 intergenic not near genes chr2L 6366108 intergenic not near genes chr2L_7_6360001 chr2L_6360001 RAL-338 71 chr2L 6426856 6426874 chr2L 6445116 6445133 roo 4 18260 1.0 4.0 2.5 1.1 18277 chr2L 6426856 3` UTR CG9527 - chr2L 6435994 intron CG9527 - chr2L 6445133 exon CG9527 - chr2L_4_6435001 chr2L_6435001 RAL-338 72 chr2L 6598116 6598145 chr2L 6599073 6599101 7 954 7.0 4.0 5.5 1.1 985 chr2L 6598116 intron CG11319 - chr2L 6598608 intron CG11319 - chr2L 6599101 intron CG11319 - chr2L_7_6595001 chr2L_6595001 RAL-338 73 chr2L 6655527 6655541 chr2L 6655887 6655903 4 359 7.5 12.0 9.8 0.4 376 chr2L 6655527 exon CG31633 - chr2L 6655715 exon CG31633 - chr2L 6655903 exon CG31633 - chr2L_4_6655001 chr2L_6655001 RAL-338 74 chr2L 6798113 6798140 chr2L 6798203 6798230 4 90 5.5 6.0 5.8 0.6 117 chr2L 6798113 intron nrv2 - chr2L 6798172 intron nrv2 - chr2L 6798230 5` UTR nrv2 - chr2L_4_6795001 chr2L_6795001 RAL-338 75 chr2L 7077354 7077385 chr2L 7077431 7077459 4 76 3.0 2.0 2.5 1.1 105 chr2L 7077354 intron Pvf2 - chr2L 7077406 intron Pvf2 - chr2L 7077459 intron Pvf2 - chr2L_4_7075001 chr2L_7075001 RAL-338 76 chr2L 7152201 7152212 chr2L 7152283 7152294 5 82 3.0 7.0 5.0 0.8 93 chr2L 7152201 intron Pvf3 - chr2L 7152248 intron Pvf3 - chr2L 7152294 intron Pvf3 - chr2L_5_7150001 chr2L_7150001 RAL-338 77 chr2L 7330390 7330420 chr2L 7330468 7330498 4 78 3.5 3.0 3.2 1.0 108 chr2L 7330390 intergenic not near genes chr2L 7330444 intergenic not near genes chr2L 7330498 intergenic not near genes chr2L_4_7330001 chr2L_7330001 RAL-338 78 chr2L 7343324 7343359 chr2L 7350439 7350475 roo 7 7115 5.0 1.5 3.2 1.7 7151 chr2L 7343324 intron Wnt6 + chr2L 7346900 intron Wnt6 + chr2L 7350475 intron Wnt6 + chr2L_7_7345001 chr2L_7345001 RAL-338 79 chr2L 7399322 7399335 chr2L 7399695 7399708 6 373 4.0 10.0 7.0 0.8 386 chr2L 7399322 intergenic not near genes chr2L 7399515 intergenic not near genes chr2L 7399708 intergenic not near genes chr2L_6_7395001 chr2L_7395001 RAL-338 80 chr2L 7922741 7922775 chr2L 7922822 7922855 5 81 0.5 2.5 1.5 2.0 114 chr2L 7922741 intron Snoo - chr2L 7922798 intron Snoo - chr2L 7922855 intron Snoo - chr2L_5_7920001 chr2L_7920001 RAL-338 81 chr2L 7977097 7977112 chr2L 7984073 7984088 297 6 6974 2.5 3.0 2.8 1.6 6991 chr2L 7977097 intron Snoo - chr2L 7980592 intron Snoo - chr2L 7984088 intron,5` UTR Snoo -,CG7231 + chr2L_6_7980001 chr2L_7980001 RAL-338 82 chr2L 8044103 8044131 chr2L 8044182 8044208 5 78 0.5 3.0 1.8 1.8 105 chr2L 8044103 intron CG7466 + chr2L 8044156 intron CG7466 + chr2L 8044208 intron CG7466 + chr2L_5_8040001 chr2L_8040001 RAL-338 83 chr2L 8258165 8258176 chr2L 8258262 8258273 4 97 6.0 1.5 3.8 0.8 108 chr2L 8258165 intergenic Btk29A -,mir-2b-1 - chr2L 8258219 intergenic Btk29A -,mir-2b-1 - chr2L 8258273 intergenic Btk29A -,mir-2b-1 - chr2L_4_8255001 chr2L_8255001 RAL-338 84 chr2L 8286311 8286327 chr2L 8286395 8286407 6 84 2.5 7.5 5.0 1.0 96 chr2L 8286311 intron Btk29A - chr2L 8286359 intron Btk29A - chr2L 8286407 intron Btk29A - chr2L_6_8285001 chr2L_8285001 RAL-338 85 chr2L 8498212 8498228 chr2L 8498293 8498309 4 81 6.0 4.0 5.0 0.7 97 chr2L 8498212 intron Dh31 - chr2L 8498260 intron Dh31 - chr2L 8498309 intron Dh31 - chr2L_4_8495001 chr2L_8495001 RAL-338 86 chr2L 8635261 8635285 chr2L 8635347 8635355 5 81 7.0 5.5 6.2 0.7 94 chr2L 8635261 intron Sema-1a + chr2L 8635308 intron Sema-1a + chr2L 8635355 intron Sema-1a + chr2L_5_8635001 chr2L_8635001 RAL-338 87 chr2L 8676845 8676868 chr2L 8676921 8676929 5 71 6.5 9.0 7.8 0.6 84 chr2L 8676845 3` UTR CG9287 - chr2L 8676887 exon CG9287 - chr2L 8676929 exon CG9287 - chr2L_5_8675001 chr2L_8675001 RAL-338 88 chr2L 8723114 8723144 chr2L 8731490 8731521 Tirant 4 8377 2.0 2.0 2.0 1.3 8407 chr2L 8723114 intron raw - chr2L 8727318 intron raw - chr2L 8731521 intron raw - chr2L_4_8725001 chr2L_8725001 RAL-338 89 chr2L 8815748 8815767 chr2L 8815828 8815848 4 79 6.5 8.5 7.5 0.5 100 chr2L 8815748 intergenic not near genes chr2L 8815798 intergenic not near genes chr2L 8815848 intergenic not near genes chr2L_4_8815001 chr2L_8815001 RAL-338 90 chr2L 9000285 9000304 chr2L 9007795 9007814 roo 8 7509 2.5 2.0 2.2 2.5 7529 chr2L 9000285 intergenic Try29F + chr2L 9004050 intergenic not near genes chr2L 9007814 intergenic not near genes chr2L_8_9000001 chr2L_9000001 RAL-338 91 chr2L 9084337 9084340 chr2L 16217660 16217660 14 7133321 15.0 13.5 14.2 0.9 7133323 chr2L 9084337 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_14_12650001 chr2L_12650001 RAL-338 92 chr2L 9096075 9096106 chr2L 9096195 9096226 5 117 5.0 4.5 4.8 0.9 151 chr2L 9096075 intergenic not near genes chr2L 9096150 intergenic not near genes chr2L 9096226 intergenic not near genes chr2L_5_9095001 chr2L_9095001 RAL-338 93 chr2L 9113862 9114127 chr2L 9113943 9114206 4 80 1.0 1.0 1.0 2.0 344 chr2L 9113862 intergenic not near genes chr2L 9114034 intergenic not near genes chr2L 9114206 intergenic not near genes chr2L_4_9110001 chr2L_9110001 RAL-338 94 chr2L 9217979 9217998 chr2L 9222765 9222785 Doc 4 4786 2.0 4.0 3.0 1.0 4806 chr2L 9217979 intron tai + chr2L 9220382 intron tai + chr2L 9222785 intron tai + chr2L_4_9220001 chr2L_9220001 RAL-338 95 chr2L 9251025 9251167 chr2L 9251103 9251263 5 93 1.5 7.0 4.2 1.0 238 chr2L 9251025 5` UTR aust - chr2L 9251144 intergenic aust -,borr - chr2L 9251263 intergenic borr -,aust - chr2L_5_9250001 chr2L_9250001 RAL-338 96 chr2L 9259225 9259240 chr2L 9259311 9259333 5 91 2.5 3.5 3.0 1.2 108 chr2L 9259225 intron Ggamma30A + chr2L 9259279 intron Ggamma30A + chr2L 9259333 intron Ggamma30A + chr2L_5_9255001 chr2L_9255001 RAL-338 97 chr2L 9303372 9303484 chr2L 9303475 9303561 4 85 4.5 3.0 3.8 0.8 189 chr2L 9303372 intergenic not near genes chr2L 9303466 intergenic not near genes chr2L 9303561 intergenic not near genes chr2L_4_9300001 chr2L_9300001 RAL-338 98 chr2L 9393504 9393531 chr2L 9396471 9396496 jockey 9 2965 3.5 1.5 2.5 2.6 2992 chr2L 9393504 intron Shawl - chr2L 9395000 intron Shawl - chr2L 9396496 intron Shawl - chr2L_9_9395001 chr2L_9395001 RAL-338 99 chr2L 9468001 9468015 chr2L 9468087 9468103 4 88 5.5 5.5 5.5 0.6 102 chr2L 9468001 intergenic not near genes chr2L 9468052 intergenic not near genes chr2L 9468103 intergenic not near genes chr2L_4_9465001 chr2L_9465001 RAL-338 100 chr2L 9565846 9565881 chr2L 9565932 9565966 7 86 5.0 4.5 4.8 1.2 120 chr2L 9565846 intron jp - chr2L 9565906 intron jp - chr2L 9565966 intron jp - chr2L_7_9565001 chr2L_9565001 RAL-338 101 chr2L 9613828 9613853 chr2L 9613998 9614024 5 171 10.0 7.5 8.8 0.5 196 chr2L 9613828 intron Trx-2 + chr2L 9613926 intron Trx-2 + chr2L 9614024 intron Trx-2 + chr2L_5_9610001 chr2L_9610001 RAL-338 102 chr2L 9633713 9633732 chr2L 9633797 9633817 5 81 7.0 3.5 5.2 0.8 104 chr2L 9633713 intergenic Apoltp + chr2L 9633765 intergenic Apoltp + chr2L 9633817 intergenic Apoltp + chr2L_5_9630001 chr2L_9630001 RAL-338 103 chr2L 9831220 9831239 chr2L 9831297 9831316 4 77 12.0 10.5 11.2 0.3 96 chr2L 9831220 intron nAChRalpha6 - chr2L 9831268 intron nAChRalpha6 - chr2L 9831316 intron nAChRalpha6 - chr2L_4_9830001 chr2L_9830001 RAL-338 104 chr2L 9836398 9836433 chr2L 9836478 9836513 4 79 3.5 2.5 3.0 1.0 115 chr2L 9836398 intron nAChRalpha6 - chr2L 9836456 intron nAChRalpha6 - chr2L 9836513 intron nAChRalpha6 - chr2L_4_9835001 chr2L_9835001 RAL-338 105 chr2L 9960720 9960756 chr2L 9960860 9960895 4 140 4.5 5.5 5.0 0.7 175 chr2L 9960720 3` UTR CG5850 - chr2L 9960808 3` UTR CG5850 - chr2L 9960895 3` UTR CG5850 - chr2L_4_9960001 chr2L_9960001 RAL-338 106 chr2L 9973724 9973748 chr2L 9980843 9980866 HMS-Beagle 11 7119 6.0 3.0 4.5 2.0 7142 chr2L 9973724 intergenic not near genes chr2L 9977295 intergenic not near genes chr2L 9980866 intergenic not near genes chr2L_11_9975001 chr2L_9975001 RAL-338 107 chr2L 10087486 10087488 chr2L 10087555 10087565 4 73 1.5 5.0 3.2 1.0 79 chr2L 10087486 intron CG44153 - chr2L 10087526 intron CG44153 - chr2L 10087565 intron CG44153 - chr2L_4_10085001 chr2L_10085001 RAL-338 108 chr2L 10095634 10095651 chr2L 10095714 10095731 4 79 2.5 4.0 3.2 1.0 97 chr2L 10095634 intron CG44153 - chr2L 10095682 intron CG44153 - chr2L 10095731 intron CG44153 - chr2L_4_10095001 chr2L_10095001 RAL-338 109 chr2L 10105280 10105296 chr2L 10105355 10105357 5 71 7.5 5.0 6.2 0.7 77 chr2L 10105280 intron,intron CG44153 -,CG34109 + chr2L 10105318 intron,intron CG44153 -,CG34109 + chr2L 10105357 intron,intron CG44153 -,CG34109 + chr2L_5_10105001 chr2L_10105001 RAL-338 110 chr2L 10156334 10156342 chr2L 10163804 10163812 blood 5 7469 1.0 3.5 2.2 1.6 7478 chr2L 10156334 intron,3` UTR CG44153 -,CG4839 + chr2L 10160073 intron CG44153 - chr2L 10163812 intron CG44153 - chr2L_5_10160001 chr2L_10160001 RAL-338 111 chr2L 10580690 10580717 chr2L 10580760 10580785 13 70 3.5 1.5 2.5 3.7 95 chr2L 10580690 intron Trim9 + chr2L 10580738 intron Trim9 + chr2L 10580785 intron Trim9 + chr2L_13_10580001 chr2L_10580001 RAL-338 112 chr2L 10862847 10862868 chr2L 10864461 10864481 Rt1c 9 1613 2.5 5.5 4.0 1.8 1634 chr2L 10862847 3` UTR CR43807 - chr2L 10863664 intron CR43807 - chr2L 10864481 3` UTR CR43807 - chr2L_9_10860001 chr2L_10860001 RAL-338 113 chr2L 11339735 11339917 chr2L 11339812 11339993 4 76 6.0 3.0 4.5 0.7 258 chr2L 11339735 intergenic not near genes chr2L 11339864 intergenic not near genes chr2L 11339993 intergenic not near genes chr2L_4_11335001 chr2L_11335001 RAL-338 114 chr2L 11374582 11374604 chr2L 11374800 11374826 4 221 6.5 6.0 6.2 0.6 244 chr2L 11374582 intergenic not near genes chr2L 11374704 intergenic not near genes chr2L 11374826 intergenic not near genes chr2L_4_11370001 chr2L_11370001 RAL-338 115 chr2L 11418675 11418685 chr2L 11418752 11418763 4 78 1.0 5.0 3.0 1.0 88 chr2L 11418675 intergenic not near genes chr2L 11418719 intergenic not near genes chr2L 11418763 intergenic not near genes chr2L_4_11415001 chr2L_11415001 RAL-338 116 chr2L 11520165 11520187 chr2L 11520304 11520321 4 136 4.5 9.0 6.8 0.5 156 chr2L 11520165 exon CG14929 + chr2L 11520243 exon CG14929 + chr2L 11520321 exon CG14929 + chr2L_4_11520001 chr2L_11520001 RAL-338 117 chr2L 11563635 11563661 chr2L 11568839 11568865 copia 10 5202 3.5 0.5 2.0 3.3 5230 chr2L 11563635 intergenic not near genes chr2L 11566250 intergenic not near genes chr2L 11568865 intergenic not near genes chr2L_10_11565001 chr2L_11565001 RAL-338 118 chr2L 11614077 11614086 chr2L 11615553 11615578 hopper2 7 1490 1.5 3.0 2.2 2.2 1501 chr2L 11614077 intron kek2 + chr2L 11614828 intron kek2 + chr2L 11615578 intron kek2 + chr2L_7_11610001 chr2L_11610001 RAL-338 119 chr2L 11713506 11713534 chr2L 11720974 11721001 blood 5 7466 3.5 0.5 2.0 1.7 7495 chr2L 11713506 intergenic not near genes chr2L 11717254 intergenic not near genes chr2L 11721001 intergenic CR44143 + chr2L_5_11715001 chr2L_11715001 RAL-338 120 chr2L 11752867 11752893 chr2L 11753157 11753183 4 286 2.5 4.5 3.5 0.9 316 chr2L 11752867 intergenic CG42470 - chr2L 11753025 3` UTR CG42470 - chr2L 11753183 3` UTR CG42470 - chr2L_4_11750001 chr2L_11750001 RAL-338 121 chr2L 12051260 12051284 chr2L 12051342 12051360 5 79 9.0 8.5 8.8 0.5 100 chr2L 12051260 exon CG14945 + chr2L 12051310 exon CG14945 + chr2L 12051360 exon CG14945 + chr2L_5_12050001 chr2L_12050001 RAL-338 122 chr2L 12151891 12151921 chr2L 12151986 12151996 5 91 7.0 6.0 6.5 0.7 105 chr2L 12151891 intron CG31760 + chr2L 12151944 intron CG31760 + chr2L 12151996 intron CG31760 + chr2L_5_12150001 chr2L_12150001 RAL-338 123 chr2L 12153938 12153960 chr2L 12154015 12154037 4 74 4.0 5.0 4.5 0.7 99 chr2L 12153938 exon CG31760 + chr2L 12153988 intron CG31760 + chr2L 12154037 intron CG31760 + chr2L_4_12150001 chr2L_12150001 RAL-338 124 chr2L 12157610 12157639 chr2L 12157689 12157717 6 78 5.5 5.0 5.2 1.0 107 chr2L 12157610 intron CG31760 + chr2L 12157664 intron CG31760 + chr2L 12157717 intron CG31760 + chr2L_6_12155001 chr2L_12155001 RAL-338 125 chr2L 12229578 12229599 chr2L 12229654 12229676 4 76 2.5 1.5 2.0 1.3 98 chr2L 12229578 intron aret + chr2L 12229627 intron aret + chr2L 12229676 intron aret + chr2L_4_12225001 chr2L_12225001 RAL-338 126 chr2L 12266527 12266535 chr2L 12266608 12266617 4 81 10.0 3.5 6.8 0.5 90 chr2L 12266527 intron aret + chr2L 12266572 intron aret + chr2L 12266617 intron aret + chr2L_4_12265001 chr2L_12265001 RAL-338 127 chr2L 12337285 12337302 chr2L 12337373 12337390 5 88 2.5 2.5 2.5 1.4 105 chr2L 12337285 intergenic not near genes chr2L 12337338 intergenic not near genes chr2L 12337390 intergenic not near genes chr2L_5_12335001 chr2L_12335001 RAL-338 128 chr2L 12357839 12357864 chr2L 12357946 12357947 6 103 7.0 4.5 5.8 0.9 108 chr2L 12357839 intron,exon bru-2 +,CG17010 + chr2L 12357893 intron,3` UTR bru-2 +,CG17010 + chr2L 12357947 intron bru-2 + chr2L_6_12355001 chr2L_12355001 RAL-338 129 chr2L 12529276 12529442 chr2L 12529409 12529515 6 84 1.0 1.0 1.0 3.0 239 chr2L 12529276 intron bun - chr2L 12529396 intron bun - chr2L 12529515 intron bun - chr2L_6_12525001 chr2L_12525001 RAL-338 130 chr2L 12558319 12558346 chr2L 12565448 12565475 HMS-Beagle 5 7129 1.0 0.5 0.8 2.8 7156 chr2L 12558319 intergenic not near genes chr2L 12561897 intergenic not near genes chr2L 12565475 intergenic not near genes chr2L_5_12560001 chr2L_12560001 RAL-338 131 chr2L 12693842 12693866 chr2L 12693918 12693939 5 76 4.5 3.5 4.0 1.0 97 chr2L 12693842 exon CG6153 + chr2L 12693890 3` UTR,3` UTR CG6153 +,CG5780 - chr2L 12693939 3` UTR,3` UTR CG6153 +,CG5780 - chr2L_5_12690001 chr2L_12690001 RAL-338 132 chr2L 12739177 12739199 chr2L 12743954 12743979 Doc 5 4780 3.0 1.5 2.2 1.6 4802 chr2L 12739177 exon MRP + chr2L 12741578 intron MRP + chr2L 12743979 exon MRP + chr2L_5_12740001 chr2L_12740001 RAL-338 133 chr2L 12791602 12791627 chr2L 12795277 12795301 F-element 4 3672 1.5 0.5 1.0 2.0 3699 chr2L 12791602 intergenic not near genes chr2L 12793452 intergenic not near genes chr2L 12795301 intergenic not near genes chr2L_4_12790001 chr2L_12790001 RAL-338 134 chr2L 12868255 12868273 chr2L 12868325 12868357 5 81 5.0 3.0 4.0 1.0 102 chr2L 12868255 intergenic not near genes chr2L 12868306 intergenic not near genes chr2L 12868357 intergenic not near genes chr2L_5_12865001 chr2L_12865001 RAL-338 135 chr2L 12933850 12933880 chr2L 12941317 12941347 blood 10 7465 4.5 3.0 3.8 2.1 7497 chr2L 12933850 intergenic not near genes chr2L 12937598 intergenic not near genes chr2L 12941347 intergenic not near genes chr2L_10_12935001 chr2L_12935001 RAL-338 136 chr2L 13036254 13036270 chr2L 13036496 13036512 X-element 6 242 2.0 2.0 2.0 2.0 258 chr2L 13036254 intron CG9932 - chr2L 13036383 intron CG9932 - chr2L 13036512 intron CG9932 - chr2L_6_13035001 chr2L_13035001 RAL-338 137 chr2L 13152235 13152257 chr2L 13152312 13152335 5 76 4.0 2.5 3.2 1.2 100 chr2L 13152235 intergenic not near genes chr2L 13152285 intergenic not near genes chr2L 13152335 intergenic not near genes chr2L_5_13150001 chr2L_13150001 RAL-338 138 chr2L 13405646 13405677 chr2L 13410443 13410473 Doc 10 4795 3.5 1.0 2.2 3.1 4827 chr2L 13405646 exon CG7110 + chr2L 13408060 intron CG7110 + chr2L 13410473 intron CG7110 + chr2L_10_13405001 chr2L_13405001 RAL-338 139 chr2L 13417423 13417438 chr2L 13417511 13417526 5 88 5.5 7.5 6.5 0.7 103 chr2L 13417423 intron,intron CG42784 +,CG43850 + chr2L 13417474 intron,intron CG42784 +,CG43850 + chr2L 13417526 intron,intron CG42784 +,CG43850 + chr2L_5_13415001 chr2L_13415001 RAL-338 140 chr2L 13449461 13449492 chr2L 13456897 13456928 Quasimodo 5 7436 0.5 3.0 1.8 1.8 7467 chr2L 13449461 intron,5` UTR CG42784 +,Hsp60D - chr2L 13453194 intron CG42784 + chr2L 13456928 intron CG42784 + chr2L_5_13450001 chr2L_13450001 RAL-338 141 chr2L 13481458 13481475 chr2L 13482065 13482082 jockey 4 607 3.0 4.5 3.8 0.8 624 chr2L 13481458 intron CG42784 + chr2L 13481770 intron CG42784 + chr2L 13482082 intron CG42784 + chr2L_4_13480001 chr2L_13480001 RAL-338 142 chr2L 13622141 13622165 chr2L 13622239 13622243 11 97 1.0 1.0 1.0 5.5 102 chr2L 13622141 intron kuz + chr2L 13622192 intron kuz + chr2L 13622243 intron kuz + chr2L_11_13620001 chr2L_13620001 RAL-338 143 chr2L 13800176 13800201 chr2L 13800280 13800305 7 104 0.5 1.5 1.0 3.5 129 chr2L 13800176 intergenic not near genes chr2L 13800240 intergenic not near genes chr2L 13800305 intergenic not near genes chr2L_7_13800001 chr2L_13800001 RAL-338 144 chr2L 13853094 13853113 chr2L 13862244 13862262 roo 4 9150 1.5 1.0 1.2 1.8 9168 chr2L 13853094 intron CenG1A + chr2L 13857678 intron CenG1A + chr2L 13862262 intron CenG1A + chr2L_4_13855001 chr2L_13855001 RAL-338 145 chr2L 13966094 13966114 chr2L 13966243 13966263 4 149 0.0 6.5 3.2 1.0 169 chr2L 13966094 intron NimB2 - chr2L 13966178 intron NimB2 - chr2L 13966263 intron NimB2 - chr2L_4_13965001 chr2L_13965001 RAL-338 146 chr2L 14243818 14243834 chr2L 14243910 14243926 4 92 5.0 0.0 2.5 1.1 108 chr2L 14243818 intergenic not near genes chr2L 14243872 intergenic not near genes chr2L 14243926 intergenic not near genes chr2L_4_14240001 chr2L_14240001 RAL-338 147 chr2L 14333609 14333638 chr2L 14335224 14335253 4 1615 14.5 8.5 11.5 0.3 1644 chr2L 14333609 exon ms(2)34Fe + chr2L 14334431 exon CG33090 + chr2L 14335253 intron CG33090 + chr2L_4_14330001 chr2L_14330001 RAL-338 148 chr2L 14588381 14588419 chr2L 14588535 14588573 5 154 0.0 1.5 0.8 2.8 192 chr2L 14588381 intergenic CG42680 - chr2L 14588477 intergenic CG42680 - chr2L 14588573 intergenic CG42680 - chr2L_5_14585001 chr2L_14585001 RAL-338 149 chr2L 14601980 14601998 chr2L 14602064 14602082 4 84 2.0 1.5 1.8 1.4 102 chr2L 14601980 exon osp - chr2L 14602031 intron osp - chr2L 14602082 intron osp - chr2L_4_14600001 chr2L_14600001 RAL-338 150 chr2L 14716604 14716632 chr2L 14716681 14716710 5 78 2.0 0.5 1.2 2.3 106 chr2L 14716604 intergenic not near genes chr2L 14716657 intergenic not near genes chr2L 14716710 intergenic not near genes chr2L_5_14715001 chr2L_14715001 RAL-338 151 chr2L 14803882 14803908 chr2L 14809085 14809111 copia 6 5199 2.5 3.5 3.0 1.5 5229 chr2L 14803882 intergenic not near genes chr2L 14806496 intergenic not near genes chr2L 14809111 intergenic not near genes chr2L_6_14805001 chr2L_14805001 RAL-338 152 chr2L 14889953 14889980 chr2L 14890376 14890405 jockey 7 425 3.5 4.5 4.0 1.4 452 chr2L 14889953 intergenic not near genes chr2L 14890179 intergenic not near genes chr2L 14890405 intergenic not near genes chr2L_7_14890001 chr2L_14890001 RAL-338 153 chr2L 15077910 15078098 chr2L 15077998 15078184 5 88 1.5 4.5 3.0 1.2 274 chr2L 15077910 intron CG15270 + chr2L 15078047 intron CG15270 + chr2L 15078184 intron CG15270 + chr2L_5_15075001 chr2L_15075001 RAL-338 154 chr2L 15079097 15079113 chr2L 15079196 15079204 6 101 7.0 12.5 9.8 0.6 107 chr2L 15079097 intron CG15270 + chr2L 15079150 intron CG15270 + chr2L 15079204 intron CG15270 + chr2L_6_15075001 chr2L_15075001 RAL-338 155 chr2L 15226373 15226390 chr2L 15226449 15226466 4 74 2.5 2.0 2.2 1.2 93 chr2L 15226373 intergenic not near genes chr2L 15226420 intergenic not near genes chr2L 15226466 intergenic not near genes chr2L_4_15225001 chr2L_15225001 RAL-338 156 chr2L 15956039 15956057 chr2L 15957506 15957524 hobo 6 1466 2.0 1.0 1.5 2.4 1485 chr2L 15956039 intron beat-Ib - chr2L 15956782 intron beat-Ib - chr2L 15957524 intron beat-Ib - chr2L_6_15955001 chr2L_15955001 RAL-338 157 chr2L 15988053 15988072 chr2L 15988136 15988160 4 83 5.0 4.0 4.5 0.7 107 chr2L 15988053 intergenic not near genes chr2L 15988106 intergenic not near genes chr2L 15988160 intergenic not near genes chr2L_4_15985001 chr2L_15985001 RAL-338 158 chr2L 16071771 16071771 chr2L 16217660 16217661 copia 21 145889 8.5 13.5 11.0 1.8 145890 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217661 intergenic not near genes chr2L_21_16140001 chr2L_16140001 RAL-338 159 chr2L 16141169 16141184 chr2L 16146376 16146391 copia 4 5206 1.5 0.0 0.8 2.2 5222 chr2L 16141169 intergenic not near genes chr2L 16143780 intergenic not near genes chr2L 16146391 intergenic not near genes chr2L_4_16140001 chr2L_16140001 RAL-338 160 chr2L 9084337 9084340 chr2L 16217660 16217660 6 7133321 15.0 13.5 14.2 0.4 7133323 chr2L 9084337 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_6_12650001 chr2L_12650001 RAL-338 161 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 7 145889 8.5 13.5 11.0 0.6 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_7_16140001 chr2L_16140001 RAL-338 162 chr2L 16243226 16243372 chr2L 16243303 16243452 4 77 1.0 0.5 0.8 2.2 226 chr2L 16243226 exon CG42818 + chr2L 16243339 exon CG42818 + chr2L 16243452 exon CG42818 + chr2L_4_16240001 chr2L_16240001 RAL-338 163 chr2L 16280255 16280286 chr2L 16281426 16281457 1360 7 1171 2.0 4.5 3.2 1.7 1202 chr2L 16280255 intron crp - chr2L 16280856 intron crp - chr2L 16281457 intron crp - chr2L_7_16280001 chr2L_16280001 RAL-338 164 chr2L 16544116 16544149 chr2L 16544195 16544228 8 77 2.0 1.0 1.5 3.2 112 chr2L 16544116 intergenic not near genes chr2L 16544172 intergenic not near genes chr2L 16544228 intergenic not near genes chr2L_8_16540001 chr2L_16540001 RAL-338 165 chr2L 16694323 16694342 chr2L 16694432 16694450 4 108 3.5 2.5 3.0 1.0 127 chr2L 16694323 intron grp + chr2L 16694386 intron grp + chr2L 16694450 intron grp + chr2L_4_16690001 chr2L_16690001 RAL-338 166 chr2L 16726775 16726802 chr2L 16726987 16727013 4 209 1.5 4.5 3.0 1.0 238 chr2L 16726775 intron VhaSFD - chr2L 16726894 intron VhaSFD - chr2L 16727013 exon VhaSFD - chr2L_4_16725001 chr2L_16725001 RAL-338 167 chr2L 17000121 17000141 chr2L 17000243 17000263 5 122 1.0 0.0 0.5 3.3 142 chr2L 17000121 intergenic not near genes chr2L 17000192 intergenic not near genes chr2L 17000263 intergenic not near genes chr2L_5_17000001 chr2L_17000001 RAL-338 168 chr2L 17050024 17050050 chr2L 17050106 17050137 6 84 5.5 8.0 6.8 0.8 113 chr2L 17050024 intergenic not near genes chr2L 17050080 intergenic not near genes chr2L 17050137 intergenic not near genes chr2L_6_17050001 chr2L_17050001 RAL-338 169 chr2L 17089514 17089532 chr2L 17089699 17089717 4 185 0.5 0.5 0.5 2.7 203 chr2L 17089514 intergenic CG12620 + chr2L 17089616 intergenic CG12620 + chr2L 17089717 intergenic not near genes chr2L_4_17085001 chr2L_17085001 RAL-338 170 chr2L 17158736 17158763 chr2L 17158837 17158865 5 101 1.0 2.0 1.5 2.0 129 chr2L 17158736 5` UTR,exon CG34106 +,beat-IIIa + chr2L 17158800 intron,intron CG34106 +,beat-IIIa + chr2L 17158865 intron,intron CG34106 +,beat-IIIa + chr2L_5_17155001 chr2L_17155001 RAL-338 171 chr2L 17167565 17167594 chr2L 17167806 17167834 pogo 5 241 1.5 1.0 1.2 2.3 269 chr2L 17167565 intron,intron CG34106 +,beat-IIIa + chr2L 17167700 intron,intron CG34106 +,beat-IIIa + chr2L 17167834 intron,intron CG34106 +,beat-IIIa + chr2L_5_17165001 chr2L_17165001 RAL-338 172 chr2L 17206174 17206204 chr2L 17206259 17206290 8 86 7.5 6.0 6.8 1.0 116 chr2L 17206174 intron beat-IIIc - chr2L 17206232 intron beat-IIIc - chr2L 17206290 intron beat-IIIc - chr2L_8_17205001 chr2L_17205001 RAL-338 173 chr2L 17303458 17303469 chr2L 17303634 17303636 5 175 10.0 8.0 9.0 0.5 178 chr2L 17303458 intergenic not near genes chr2L 17303547 intergenic not near genes chr2L 17303636 intergenic not near genes chr2L_5_17300001 chr2L_17300001 RAL-338 174 chr2L 17360027 17360048 chr2L 17360205 17360226 4 178 0.5 0.0 0.2 3.3 199 chr2L 17360027 intergenic not near genes chr2L 17360126 intergenic not near genes chr2L 17360226 intergenic not near genes chr2L_4_17360001 chr2L_17360001 RAL-338 175 chr2L 17388185 17388218 chr2L 17388379 17388412 6 194 4.5 2.5 3.5 1.3 227 chr2L 17388185 intron CLIP-190 + chr2L 17388298 intron CLIP-190 + chr2L 17388412 intron CLIP-190 + chr2L_6_17385001 chr2L_17385001 RAL-338 176 chr2L 17609712 17609741 chr2L 17609789 17609799 4 68 6.0 6.0 6.0 0.6 87 chr2L 17609712 intergenic not near genes chr2L 17609756 intergenic not near genes chr2L 17609799 intergenic not near genes chr2L_4_17605001 chr2L_17605001 RAL-338 177 chr2L 17819925 17819952 chr2L 17825128 17825150 copia 4 5202 1.0 3.5 2.2 1.2 5225 chr2L 17819925 intron CadN2 - chr2L 17822538 intron CadN2 - chr2L 17825150 intron CadN2 - chr2L_4_17820001 chr2L_17820001 RAL-338 178 chr2L 17911958 17911989 chr2L 17914135 17914138 pogo 7 2170 1.5 1.5 1.5 2.8 2180 chr2L 17911958 intergenic not near genes chr2L 17913048 intergenic not near genes chr2L 17914138 intergenic CG43271 - chr2L_7_17910001 chr2L_17910001 RAL-338 179 chr2L 18051873 18051900 chr2L 18061020 18061047 roo 8 9147 4.0 2.5 3.2 1.9 9174 chr2L 18051873 intron rdo + chr2L 18056460 intron rdo + chr2L 18061047 intron rdo + chr2L_8_18055001 chr2L_18055001 RAL-338 180 chr2L 18315260 18315276 chr2L 18315335 18315356 4 79 7.0 9.0 8.0 0.4 96 chr2L 18315260 intergenic not near genes chr2L 18315308 intergenic not near genes chr2L 18315356 intergenic not near genes chr2L_4_18315001 chr2L_18315001 RAL-338 181 chr2L 16217660 16217660 chr2L 18622718 18622719 6 2405058 15.0 14.0 14.5 0.4 2405059 chr2L 16217660 intergenic not near genes chr2L 17420190 intron Dif - chr2L 18622719 intron MESR3 + chr2L_6_17420001 chr2L_17420001 RAL-338 182 chr2L 18745142 18745164 chr2L 18745229 18745248 4 86 6.0 3.5 4.8 0.7 106 chr2L 18745142 intergenic not near genes chr2L 18745195 intergenic not near genes chr2L 18745248 intergenic not near genes chr2L_4_18745001 chr2L_18745001 RAL-338 183 chr2L 18812557 18812585 chr2L 18812820 18812846 10 262 1.0 1.0 1.0 5.0 289 chr2L 18812557 intergenic CG17325 +,CG42305 + chr2L 18812702 5` UTR,5` UTR CG17325 +,CG42305 + chr2L 18812846 5` UTR,5` UTR CG17325 +,CG42305 + chr2L_10_18810001 chr2L_18810001 RAL-338 184 chr2L 18898399 18898423 chr2L 18898480 18898505 5 81 2.0 2.5 2.2 1.6 106 chr2L 18898399 intergenic not near genes chr2L 18898452 intergenic not near genes chr2L 18898505 intergenic not near genes chr2L_5_18895001 chr2L_18895001 RAL-338 185 chr2L 19070278 19070300 chr2L 19070366 19070393 4 90 3.0 2.0 2.5 1.1 115 chr2L 19070278 intergenic CG10702 - chr2L 19070336 intergenic CG10702 - chr2L 19070393 intergenic not near genes chr2L_4_19070001 chr2L_19070001 RAL-338 186 chr2L 19246832 19246852 chr2L 19246912 19246929 4 74 2.0 1.5 1.8 1.4 97 chr2L 19246832 intergenic not near genes chr2L 19246880 intergenic not near genes chr2L 19246929 intergenic not near genes chr2L_4_19245001 chr2L_19245001 RAL-338 187 chr2L 19345014 19345037 chr2L 19357223 19357241 blood 7 12208 2.5 1.0 1.8 2.5 12227 chr2L 19345014 intron dnt - chr2L 19351128 intron dnt - chr2L 19357241 intron dnt - chr2L_7_19350001 chr2L_19350001 RAL-338 188 chr2L 19357550 19357562 chr2L 19357637 19357652 4 89 2.0 2.5 2.2 1.2 102 chr2L 19357550 intron dnt - chr2L 19357601 intron dnt - chr2L 19357652 intron dnt - chr2L_4_19355001 chr2L_19355001 RAL-338 189 chr2L 19378339 19378368 chr2L 19378422 19378451 4 83 3.0 1.5 2.2 1.2 112 chr2L 19378339 intergenic not near genes chr2L 19378395 intergenic not near genes chr2L 19378451 intergenic not near genes chr2L_4_19375001 chr2L_19375001 RAL-338 190 chr2L 19380509 19380521 chr2L 19380588 19380601 5 80 1.0 0.0 0.5 3.3 92 chr2L 19380509 intergenic CG17350 + chr2L 19380555 intergenic CG17350 + chr2L 19380601 intergenic CG17350 + chr2L_5_19380001 chr2L_19380001 RAL-338 191 chr2L 19407717 19407739 chr2L 19407914 19407936 8 197 5.0 8.0 6.5 1.1 219 chr2L 19407717 intron Pax - chr2L 19407826 intron Pax - chr2L 19407936 intron Pax - chr2L_8_19405001 chr2L_19405001 RAL-338 192 chr2L 19441072 19441078 chr2L 19441149 19441155 5 77 4.5 3.5 4.0 1.0 83 chr2L 19441072 intron CG10237 - chr2L 19441114 intron CG10237 - chr2L 19441155 intron CG10237 - chr2L_5_19440001 chr2L_19440001 RAL-338 193 chr2L 19441404 19441431 chr2L 19446355 19446377 4 4948 18.5 27.5 23.0 0.2 4973 chr2L 19441404 intron CG10237 - chr2L 19443890 intron,intron RanGAP +,Hs2st - chr2L 19446377 exon RanGAP + chr2L_4_19440001 chr2L_19440001 RAL-338 194 chr2L 19566136 19566169 chr2L 19566210 19566243 8 71 10.0 6.0 8.0 0.9 107 chr2L 19566136 exon CG13077 + chr2L 19566190 exon CG13077 + chr2L 19566243 exon CG13077 + chr2L_8_19565001 chr2L_19565001 RAL-338 195 chr2L 19617642 19617660 chr2L 19618076 19618105 7 441 5.5 8.5 7.0 0.9 463 chr2L 19617642 intron Lar + chr2L 19617874 intron Lar + chr2L 19618105 intron Lar + chr2L_7_19615001 chr2L_19615001 RAL-338 196 chr2L 19620118 19620130 chr2L 19621079 19621118 jockey 9 985 5.0 2.0 3.5 2.0 1000 chr2L 19620118 intron Lar + chr2L 19620618 intron Lar + chr2L 19621118 intron Lar + chr2L_9_19620001 chr2L_19620001 RAL-338 197 chr2L 19638541 19638569 chr2L 19638629 19638656 8 88 6.5 8.5 7.5 0.9 115 chr2L 19638541 intron Lar + chr2L 19638598 intron Lar + chr2L 19638656 intron Lar + chr2L_8_19635001 chr2L_19635001 RAL-338 198 chr2L 19652569 19652602 chr2L 19674005 19674038 opus 5 21435 1.5 1.0 1.2 2.3 21469 chr2L 19652569 intron Lar + chr2L 19663304 intron Lar + chr2L 19674038 intron Lar + chr2L_5_19660001 chr2L_19660001 RAL-338 199 chr2L 19703540 19703565 chr2L 19712676 19712700 roo 7 9136 2.5 5.5 4.0 1.4 9160 chr2L 19703540 intron Lar + chr2L 19708120 intron Lar + chr2L 19712700 intron Lar + chr2L_7_19705001 chr2L_19705001 RAL-338 200 chr2L 19712699 19712721 chr2L 19712783 19712805 4 83 10.5 9.0 9.8 0.4 106 chr2L 19712699 intron Lar + chr2L 19712752 intron Lar + chr2L 19712805 intron Lar + chr2L_4_19710001 chr2L_19710001 RAL-338 201 chr2L 19762808 19762840 chr2L 19763050 19763082 pogo 6 242 1.5 2.5 2.0 2.0 274 chr2L 19762808 5` UTR fbp - chr2L 19762945 intron fbp - chr2L 19763082 intron fbp - chr2L_6_19760001 chr2L_19760001 RAL-338 202 chr2L 19994639 19994671 chr2L 19994728 19994738 5 80 4.0 2.5 3.2 1.2 99 chr2L 19994639 intron CG43861 - chr2L 19994688 intron CG43861 - chr2L 19994738 intron CG43861 - chr2L_5_19990001 chr2L_19990001 RAL-338 203 chr2L 20005881 20005902 chr2L 20010957 20010978 flea 5 5076 1.0 2.5 1.8 1.8 5097 chr2L 20005881 intron CG43861 - chr2L 20008430 intron CG43861 - chr2L 20010978 intron CG43861 - chr2L_5_20005001 chr2L_20005001 RAL-338 204 chr2L 20036531 20036546 chr2L 20036615 20036630 4 84 2.5 2.5 2.5 1.1 99 chr2L 20036531 intron sNPF + chr2L 20036580 intron sNPF + chr2L 20036630 intron sNPF + chr2L_4_20035001 chr2L_20035001 RAL-338 205 chr2L 20041429 20041452 chr2L 20041514 20041537 9 84 4.5 1.5 3.0 2.2 108 chr2L 20041429 intron sNPF + chr2L 20041483 intron sNPF + chr2L 20041537 intron sNPF + chr2L_9_20040001 chr2L_20040001 RAL-338 206 chr2L 20272112 20272130 chr2L 20282823 20282841 copia 4 10710 2.0 1.5 1.8 1.4 10729 chr2L 20272112 intergenic not near genes chr2L 20277476 intergenic not near genes chr2L 20282841 intergenic not near genes chr2L_4_20275001 chr2L_20275001 RAL-338 207 chr2L 20372229 20372232 chr2L 20372470 20372473 pogo 4 241 2.5 1.0 1.8 1.4 244 chr2L 20372229 intergenic Ugt37a1 - chr2L 20372351 intergenic Ugt37a1 - chr2L 20372473 exon Ugt37a1 - chr2L_4_20370001 chr2L_20370001 RAL-338 208 chr2L 20568673 20568686 chr2L 20569055 20569076 X-element 4 388 2.0 2.5 2.2 1.2 403 chr2L 20568673 intron CR45347 + chr2L 20568874 intron CR45347 + chr2L 20569076 intron CR45347 + chr2L_4_20565001 chr2L_20565001 RAL-338 209 chr2L 20576225 20576237 chr2L 20583693 20583705 blood 4 7468 2.5 4.0 3.2 1.0 7480 chr2L 20576225 intergenic not near genes chr2L 20579965 intergenic not near genes chr2L 20583705 3` UTR CR44909 - chr2L_4_20575001 chr2L_20575001 RAL-338 210 chr2L 20694839 20694869 chr2L 20695019 20695035 6 177 6.5 3.5 5.0 1.0 196 chr2L 20694839 intron Hr38 - chr2L 20694937 intron Hr38 - chr2L 20695035 intron Hr38 - chr2L_6_20690001 chr2L_20690001 RAL-338 211 chr2L 20712031 20712044 chr2L 20712112 20712142 4 94 9.0 7.0 8.0 0.4 111 chr2L 20712031 intron,5` UTR Hr38 -,CR44188 + chr2L 20712086 intron,5` UTR Hr38 -,CR44188 + chr2L 20712142 intron,5` UTR Hr38 -,CR44188 + chr2L_4_20710001 chr2L_20710001 RAL-338 212 chr2L 20793927 20793959 chr2L 20794019 20794038 4 90 8.0 7.5 7.8 0.5 111 chr2L 20793927 intron vari - chr2L 20793982 intron vari - chr2L 20794038 intron vari - chr2L_4_20790001 chr2L_20790001 RAL-338 213 chr2L 20817997 20818018 chr2L 20818075 20818096 5 78 5.5 9.0 7.2 0.6 99 chr2L 20817997 intron CheB38a - chr2L 20818046 intron CheB38a - chr2L 20818096 exon CheB38a - chr2L_5_20815001 chr2L_20815001 RAL-338 214 chr2L 20835830 20835841 chr2L 20836545 20836558 Quasimodo 4 716 0.0 2.5 1.2 1.8 728 chr2L 20835830 5` UTR Oseg5 - chr2L 20836194 intergenic Oseg5 -,Spn38F - chr2L 20836558 intergenic Spn38F - chr2L_4_20835001 chr2L_20835001 RAL-338 215 chr2L 20840027 20840058 chr2L 20840239 20840270 7 209 8.0 2.5 5.2 1.1 243 chr2L 20840027 intergenic not near genes chr2L 20840148 intergenic not near genes chr2L 20840270 intergenic CG31676 + chr2L_7_20840001 chr2L_20840001 RAL-338 216 chr2L 20841202 20841218 chr2L 20841618 20841634 4 416 7.5 2.5 5.0 0.7 432 chr2L 20841202 intron CG31676 + chr2L 20841418 intron CG31676 + chr2L 20841634 intron CG31676 + chr2L_4_20840001 chr2L_20840001 RAL-338 217 chr2L 20901470 20901488 chr2L 20902633 20902649 1360 5 1161 1.5 3.0 2.2 1.6 1179 chr2L 20901470 intron,intron CG43739 -,sky - chr2L 20902060 intron,intron CG43739 -,sky - chr2L 20902649 intron,intron CG43739 -,sky - chr2L_5_20900001 chr2L_20900001 RAL-338 218 chr2L 20957349 20957377 chr2L 20957441 20957457 4 90 11.5 8.0 9.8 0.4 108 chr2L 20957349 intergenic not near genes chr2L 20957403 intergenic not near genes chr2L 20957457 intergenic not near genes chr2L_4_20955001 chr2L_20955001 RAL-338 219 chr2L 20976640 20976679 chr2L 20981455 20981490 X-element 8 4814 1.5 0.5 1.0 4.0 4850 chr2L 20976640 intron CG42238 - chr2L 20979065 intron CG42238 - chr2L 20981490 intron CG42238 - chr2L_8_20975001 chr2L_20975001 RAL-338 220 chr2L 20984743 20984772 chr2L 20984831 20984864 4 91 6.0 7.0 6.5 0.5 121 chr2L 20984743 intron CG42238 - chr2L 20984804 intron CG42238 - chr2L 20984864 intron CG42238 - chr2L_4_20980001 chr2L_20980001 RAL-338 221 chr2L 20991040 20991050 chr2L 20991118 20991128 4 78 2.5 2.5 2.5 1.1 88 chr2L 20991040 intron CG42238 - chr2L 20991084 intron CG42238 - chr2L 20991128 intron CG42238 - chr2L_4_20990001 chr2L_20990001 RAL-338 222 chr2L 21020272 21020308 chr2L 21023948 21023985 NOF 9 3676 1.5 1.5 1.5 3.6 3713 chr2L 21020272 intron CG42238 - chr2L 21022128 intron CG42238 - chr2L 21023985 intron CG42238 - chr2L_9_21020001 chr2L_21020001 RAL-338 223 chr2L 21113691 21113707 chr2L 21113783 21113800 4 92 3.5 4.0 3.8 0.8 109 chr2L 21113691 intron Nhe2 + chr2L 21113746 intron Nhe2 + chr2L 21113800 intron Nhe2 + chr2L_4_21110001 chr2L_21110001 RAL-338 224 chr2L 21234439 21234452 chr2L 21234588 21234601 5 149 2.5 8.5 5.5 0.8 162 chr2L 21234439 intron CG31626 - chr2L 21234520 intron CG31626 - chr2L 21234601 intron CG31626 - chr2L_5_21230001 chr2L_21230001 RAL-338 225 chr2L 21276552 21276582 chr2L 21276652 21276682 4 100 5.5 4.0 4.8 0.7 130 chr2L 21276552 intron CG8671 + chr2L 21276617 intron CG8671 + chr2L 21276682 intron CG8671 + chr2L_4_21275001 chr2L_21275001 RAL-338 226 chr2L 21597033 21597061 chr2L 21604776 21604805 roo 4 7744 1.0 2.0 1.5 1.6 7772 chr2L 21597033 intergenic not near genes chr2L 21600919 intergenic not near genes chr2L 21604805 intergenic not near genes chr2L_4_21600001 chr2L_21600001 RAL-338 227 chr2L 21770304 21770317 chr2L 21770565 21770578 6 260 7.5 5.0 6.2 0.8 274 chr2L 21770304 intron CG31612 - chr2L 21770441 intron CG31612 - chr2L 21770578 intron CG31612 - chr2L_6_21770001 chr2L_21770001 RAL-338 228 chr2L 21806235 21806254 chr2L 21806338 21806355 7 101 1.5 0.0 0.8 3.9 120 chr2L 21806235 intergenic not near genes chr2L 21806295 intergenic not near genes chr2L 21806355 intergenic not near genes chr2L_7_21805001 chr2L_21805001 RAL-338 229 chr2L 21845146 21845183 chr2L 21845286 21845323 8 139 6.5 6.0 6.2 1.1 177 chr2L 21845146 intergenic not near genes chr2L 21845234 intergenic not near genes chr2L 21845323 intergenic not near genes chr2L_8_21845001 chr2L_21845001 RAL-338 230 chr2L 21981685 21981710 chr2L 21990850 21990875 roo 9 9165 2.5 6.5 4.5 1.6 9190 chr2L 21981685 exon CG2528 - chr2L 21986280 intron CG2528 - chr2L 21990875 exon CG2528 - chr2L_9_21985001 chr2L_21985001 RAL-338 231 chr2L 22258617 22258646 chr2L 22260740 22260770 G6 6 2124 0.0 0.5 0.2 5.0 2153 chr2L 22258617 intergenic Tif-IA + chr2L 22259694 intergenic not near genes chr2L 22260770 intergenic not near genes chr2L_6_22255001 chr2L_22255001 RAL-338 232 chr2L 22679802 22679822 chr2L 22684574 22684586 F-element 4 4769 3.0 2.5 2.8 1.1 4784 chr2L 22679802 intron CG40006 - chr2L 22682194 intron CG40006 - chr2L 22684586 intron CG40006 - chr2L_4_22680001 chr2L_22680001 RAL-338 233 chr2R 529328 529354 chr2R 537953 537978 Max-element 5 8624 2.5 3.0 2.8 1.3 8650 chr2R 529328 intron CG40378 + chr2R 533653 intron CG40378 + chr2R 537978 intron CG40378 + chr2R_5_530001 chr2R_530001 RAL-338 234 chr2R 552761 552786 chr2R 553979 553987 1360 6 1212 8.5 6.0 7.2 0.7 1226 chr2R 552761 intron CG40378 + chr2R 553374 intron CG40378 + chr2R 553987 intron CG40378 + chr2R_6_550001 chr2R_550001 RAL-338 235 chr2R 1513956 1513981 chr2R 1514105 1514134 8 152 40.0 41.5 40.8 0.2 178 chr2R 1513956 3` UTR Maf1 - chr2R 1514045 3` UTR Maf1 - chr2R 1514134 3` UTR Maf1 - chr2R_8_1510001 chr2R_1510001 RAL-338 236 chr2R 3293756 3293772 chr2R 3293834 3293850 4 78 0.5 1.0 0.8 2.2 94 chr2R 3293756 intergenic not near genes chr2R 3293803 intergenic not near genes chr2R 3293850 intergenic not near genes chr2R_4_3290001 chr2R_3290001 RAL-338 237 chr2R 4624642 4624670 chr2R 4626547 4626575 Bica 9 1905 3.0 2.5 2.8 2.4 1933 chr2R 4624642 intergenic not near genes chr2R 4625608 intergenic not near genes chr2R 4626575 intergenic not near genes chr2R_9_4625001 chr2R_4625001 RAL-338 238 chr2R 4634168 4634186 chr2R 4634233 4634263 6 68 1.0 1.0 1.0 3.0 95 chr2R 4634168 intergenic not near genes chr2R 4634216 intergenic not near genes chr2R 4634263 intergenic not near genes chr2R_6_4630001 chr2R_4630001 RAL-338 239 chr2R 5075224 5075242 chr2R 5075352 5075369 4 128 3.0 0.0 1.5 1.6 145 chr2R 5075224 intergenic not near genes chr2R 5075296 intergenic not near genes chr2R 5075369 intergenic not near genes chr2R_4_5075001 chr2R_5075001 RAL-338 240 chr2R 5075349 5075372 chr2R 5075765 5075787 5 415 0.0 1.5 0.8 2.8 438 chr2R 5075349 intergenic not near genes chr2R 5075568 intergenic not near genes chr2R 5075787 intergenic not near genes chr2R_5_5075001 chr2R_5075001 RAL-338 241 chr2R 5125249 5125274 chr2R 5125567 5125592 4 318 1.0 0.0 0.5 2.7 343 chr2R 5125249 intron gus - chr2R 5125420 intron gus - chr2R 5125592 intron gus - chr2R_4_5125001 chr2R_5125001 RAL-338 242 chr2R 5209781 5209809 chr2R 5210313 5210342 6 532 2.5 3.0 2.8 1.6 561 chr2R 5209781 intron Nipped-A - chr2R 5210062 intron Nipped-A - chr2R 5210342 intron Nipped-A - chr2R_6_5210001 chr2R_5210001 RAL-338 243 chr2R 5256757 5256781 chr2R 5256845 5256869 8 87 9.5 8.5 9.0 0.8 112 chr2R 5256757 intergenic not near genes chr2R 5256813 intergenic not near genes chr2R 5256869 intergenic not near genes chr2R_8_5255001 chr2R_5255001 RAL-338 244 chr2R 5581397 5581425 chr2R 5627606 5627615 10 46204 2.5 7.5 5.0 1.7 46218 chr2R 5581397 intergenic not near genes chr2R 5604506 exon Fis1 - chr2R 5627615 intergenic not near genes chr2R_10_5600001 chr2R_5600001 RAL-338 245 chr2R 5833769 5833788 chr2R 5833836 5833863 4 73 8.0 7.5 7.8 0.5 94 chr2R 5833769 intron dpr12 + chr2R 5833816 intron dpr12 + chr2R 5833863 intron dpr12 + chr2R_4_5830001 chr2R_5830001 RAL-338 246 chr2R 5869280 5869304 chr2R 5874356 5874377 flea 5 5075 2.0 4.5 3.2 1.2 5097 chr2R 5869280 intergenic not near genes chr2R 5871828 intergenic not near genes chr2R 5874377 intergenic not near genes chr2R_5_5870001 chr2R_5870001 RAL-338 247 chr2R 6096715 6096751 chr2R 6101910 6101947 BS 10 5194 1.5 2.0 1.8 3.6 5232 chr2R 6096715 intron EcR - chr2R 6099331 intron EcR - chr2R 6101947 intron EcR - chr2R_10_6095001 chr2R_6095001 RAL-338 248 chr2R 6236229 6236232 chr2R 6236313 6236320 4 87 7.0 7.0 7.0 0.5 91 chr2R 6236229 intron bin3 + chr2R 6236274 intron bin3 + chr2R 6236320 intron bin3 + chr2R_4_6235001 chr2R_6235001 RAL-338 249 chr2R 6607929 6607946 chr2R 6608031 6608048 5 102 0.5 0.5 0.5 3.3 119 chr2R 6607929 intron jing + chr2R 6607988 intron jing + chr2R 6608048 intron jing + chr2R_5_6605001 chr2R_6605001 RAL-338 250 chr2R 6640351 6640382 chr2R 6640442 6640472 5 90 8.0 11.0 9.5 0.5 121 chr2R 6640351 exon Bap170 + chr2R 6640412 exon Bap170 + chr2R 6640472 exon Bap170 + chr2R_5_6640001 chr2R_6640001 RAL-338 251 chr2R 6696605 6696640 chr2R 6696687 6696723 7 83 2.5 4.0 3.2 1.7 118 chr2R 6696605 5` UTR Mob4 - chr2R 6696664 intergenic Mob4 -,Rab2 + chr2R 6696723 intergenic Rab2 +,Mob4 - chr2R_7_6695001 chr2R_6695001 RAL-338 252 chr2R 6898309 6898331 chr2R 6898652 6898674 8 342 3.0 7.5 5.2 1.3 365 chr2R 6898309 intron CG30158 + chr2R 6898492 intron CG30158 + chr2R 6898674 intron CG30158 + chr2R_8_6895001 chr2R_6895001 RAL-338 253 chr2R 7164285 7164288 chr2R 7164475 7164475 4 190 1.5 4.5 3.0 1.0 190 chr2R 7164285 intron pk + chr2R 7164380 intron pk + chr2R 7164475 intron pk + chr2R_4_7160001 chr2R_7160001 RAL-338 254 chr2R 7235826 7235842 chr2R 7240906 7240932 jockey 8 5085 4.0 1.5 2.8 2.1 5106 chr2R 7235826 intergenic not near genes chr2R 7238379 intergenic not near genes chr2R 7240932 intergenic not near genes chr2R_8_7235001 chr2R_7235001 RAL-338 255 chr2R 7250728 7250754 chr2R 7250819 7250852 8 95 3.5 3.0 3.2 1.9 124 chr2R 7250728 intergenic Gadd45 + chr2R 7250790 intergenic Gadd45 + chr2R 7250852 intergenic Gadd45 + chr2R_8_7250001 chr2R_7250001 RAL-338 256 chr2R 7253556 7253571 chr2R 7253871 7253886 7 315 3.5 4.5 4.0 1.4 330 chr2R 7253556 intergenic not near genes chr2R 7253721 intergenic not near genes chr2R 7253886 intergenic not near genes chr2R_7_7250001 chr2R_7250001 RAL-338 257 chr2R 7336102 7336134 chr2R 7336219 7336224 4 110 9.0 10.0 9.5 0.4 122 chr2R 7336102 intron Dscam1 - chr2R 7336163 intron Dscam1 - chr2R 7336224 intron Dscam1 - chr2R_4_7335001 chr2R_7335001 RAL-338 258 chr2R 7345228 7345251 chr2R 7345327 7345349 4 99 8.0 5.0 6.5 0.5 121 chr2R 7345228 intron Dscam1 - chr2R 7345288 intron Dscam1 - chr2R 7345349 intron Dscam1 - chr2R_4_7345001 chr2R_7345001 RAL-338 259 chr2R 7551691 7551719 chr2R 7551780 7551803 8 89 5.5 6.0 5.8 1.2 112 chr2R 7551691 intron Corin + chr2R 7551747 intron Corin + chr2R 7551803 intron Corin + chr2R_8_7550001 chr2R_7550001 RAL-338 260 chr2R 7869193 7869217 chr2R 7873977 7874003 Doc 6 4785 1.5 2.5 2.0 2.0 4810 chr2R 7869193 intron Dgk - chr2R 7871598 intron Dgk - chr2R 7874003 intron Dgk - chr2R_6_7870001 chr2R_7870001 RAL-338 261 chr2R 7972013 7972028 chr2R 7979100 7979115 5 7088 7.5 19.0 13.2 0.4 7102 chr2R 7972013 intergenic CG8726 -,CSN4 + chr2R 7975564 exon ACC - chr2R 7979115 exon ACC - chr2R_5_7975001 chr2R_7975001 RAL-338 262 chr2R 8015665 8015684 chr2R 8017677 8017707 4 2020 0.5 4.0 2.2 1.2 2042 chr2R 8015665 intergenic mir-4981 + chr2R 8016686 intergenic not near genes chr2R 8017707 intergenic not near genes chr2R_4_8015001 chr2R_8015001 RAL-338 263 chr2R 8076698 8076710 chr2R 8076777 8076790 4 80 4.0 4.5 4.2 0.8 92 chr2R 8076698 intron lig + chr2R 8076744 intron lig + chr2R 8076790 intron lig + chr2R_4_8075001 chr2R_8075001 RAL-338 264 chr2R 8089253 8089272 chr2R 8089339 8089358 6 86 1.5 0.0 0.8 3.3 105 chr2R 8089253 3` UTR sut2 + chr2R 8089306 intergenic sut2 +,sut3 + chr2R 8089358 intergenic sut2 +,sut3 + chr2R_6_8085001 chr2R_8085001 RAL-338 265 chr2R 8152966 8152990 chr2R 8153050 8153075 5 85 4.0 6.0 5.0 0.8 109 chr2R 8152966 intron,intron Lpin -,kermit - chr2R 8153020 intron,intron Lpin -,kermit - chr2R 8153075 intron,intron Lpin -,kermit - chr2R_5_8150001 chr2R_8150001 RAL-338 266 chr2R 8286764 8286781 chr2R 8287293 8287310 5 528 2.5 7.0 4.8 0.9 546 chr2R 8286764 intergenic not near genes chr2R 8287037 intergenic not near genes chr2R 8287310 intergenic not near genes chr2R_5_8285001 chr2R_8285001 RAL-338 267 chr2R 8330860 8330886 chr2R 8331346 8331372 roo 7 486 2.5 0.5 1.5 2.8 512 chr2R 8330860 intron pdm3 + chr2R 8331116 intron pdm3 + chr2R 8331372 intron pdm3 + chr2R_7_8330001 chr2R_8330001 RAL-338 268 chr2R 8368204 8368222 chr2R 8368284 8368301 5 80 4.5 5.5 5.0 0.8 97 chr2R 8368204 intron pdm3 + chr2R 8368252 intron pdm3 + chr2R 8368301 intron pdm3 + chr2R_5_8365001 chr2R_8365001 RAL-338 269 chr2R 8398225 8398242 chr2R 8402988 8403009 Doc 10 4772 4.0 1.5 2.8 2.6 4784 chr2R 8398225 intron CG2121 - chr2R 8400617 intron CG2121 - chr2R 8403009 intron CG2121 - chr2R_10_8400001 chr2R_8400001 RAL-338 270 chr2R 8478222 8478252 chr2R 8478306 8478321 8 88 6.5 6.0 6.2 1.1 99 chr2R 8478222 intron mtt - chr2R 8478272 intron mtt - chr2R 8478321 intron mtt - chr2R_8_8475001 chr2R_8475001 RAL-338 271 chr2R 8483967 8483993 chr2R 8484043 8484069 4 75 1.0 2.0 1.5 1.6 102 chr2R 8483967 intron mtt - chr2R 8484018 intron mtt - chr2R 8484069 intron mtt - chr2R_4_8480001 chr2R_8480001 RAL-338 272 chr2R 8508758 8508790 chr2R 8508841 8508873 6 78 5.5 5.5 5.5 0.9 115 chr2R 8508758 intron mtt - chr2R 8508816 intron mtt - chr2R 8508873 intron mtt - chr2R_6_8505001 chr2R_8505001 RAL-338 273 chr2R 8632510 8632538 chr2R 8632618 8632643 4 106 9.5 5.5 7.5 0.5 133 chr2R 8632510 intergenic not near genes chr2R 8632576 intergenic not near genes chr2R 8632643 intergenic not near genes chr2R_4_8630001 chr2R_8630001 RAL-338 274 chr2R 8722763 8722792 chr2R 8723004 8723032 pogo 6 239 0.0 3.5 1.8 2.1 269 chr2R 8722763 intron CG14767 - chr2R 8722898 intron CG14767 - chr2R 8723032 intron CG14767 - chr2R_6_8720001 chr2R_8720001 RAL-338 275 chr2R 8789471 8789489 chr2R 8789547 8789570 4 79 1.5 3.5 2.5 1.1 99 chr2R 8789471 intergenic not near genes chr2R 8789520 intergenic not near genes chr2R 8789570 intergenic not near genes chr2R_4_8785001 chr2R_8785001 RAL-338 276 chr2R 9212698 9212722 chr2R 9213181 9213207 roo 8 484 5.5 2.0 3.8 1.7 509 chr2R 9212698 intergenic CR45309 + chr2R 9212952 intergenic CR45309 + chr2R 9213207 5` UTR CR45309 + chr2R_8_9210001 chr2R_9210001 RAL-338 277 chr2R 9237619 9237647 chr2R 9237724 9237753 5 103 7.0 7.0 7.0 0.6 134 chr2R 9237619 intron,exon hig -,Cyp4p2 + chr2R 9237686 intron,exon hig -,Cyp4p2 + chr2R 9237753 intron,exon hig -,Cyp4p2 + chr2R_5_9235001 chr2R_9235001 RAL-338 278 chr2R 9440422 9440444 chr2R 9440775 9440797 5 353 3.5 8.5 6.0 0.7 375 chr2R 9440422 intron ced-6 - chr2R 9440610 intron ced-6 - chr2R 9440797 intron ced-6 - chr2R_5_9440001 chr2R_9440001 RAL-338 279 chr2R 9746567 9746583 chr2R 9747900 9747917 4 1334 11.5 17.0 14.2 0.3 1350 chr2R 9746567 5` UTR sqa - chr2R 9747242 5` UTR sqa - chr2R 9747917 5` UTR sqa - chr2R_4_9745001 chr2R_9745001 RAL-338 280 chr2R 9945435 9945458 chr2R 9945631 9945652 BS 7 196 1.0 2.5 1.8 2.5 217 chr2R 9945435 intron Mef2 - chr2R 9945544 intron Mef2 - chr2R 9945652 intron Mef2 - chr2R_7_9945001 chr2R_9945001 RAL-338 281 chr2R 10005846 10005880 chr2R 10007011 10007045 1360 7 1163 2.0 2.0 2.0 2.3 1199 chr2R 10005846 intron Pka-R2 - chr2R 10006446 intron Pka-R2 - chr2R 10007045 intron Pka-R2 - chr2R_7_10005001 chr2R_10005001 RAL-338 282 chr2R 10167108 10167147 chr2R 10167184 10167205 6 71 10.5 9.5 10.0 0.5 97 chr2R 10167108 intron KCNQ - chr2R 10167156 intron KCNQ - chr2R 10167205 intron KCNQ - chr2R_6_10165001 chr2R_10165001 RAL-338 283 chr2R 10190452 10190469 chr2R 10190536 10190549 6 79 5.5 6.5 6.0 0.9 97 chr2R 10190452 intron KCNQ - chr2R 10190500 intron KCNQ - chr2R 10190549 intron KCNQ - chr2R_6_10190001 chr2R_10190001 RAL-338 284 chr2R 10216204 10216221 chr2R 10216279 10216297 5 76 2.0 3.0 2.5 1.4 93 chr2R 10216204 intron,intron CG12912 -,Hr46 - chr2R 10216250 intron,intron CG12912 -,Hr46 - chr2R 10216297 intron,intron CG12912 -,Hr46 - chr2R_5_10215001 chr2R_10215001 RAL-338 285 chr2R 10257173 10257189 chr2R 10257264 10257280 4 91 1.0 0.5 0.8 2.2 107 chr2R 10257173 intron CG12911 + chr2R 10257226 intron CG12911 + chr2R 10257280 intron CG12911 + chr2R_4_10255001 chr2R_10255001 RAL-338 286 chr2R 10442552 10442574 chr2R 10442625 10442651 7 74 4.0 3.5 3.8 1.5 99 chr2R 10442552 intron Galphao + chr2R 10442602 intron Galphao + chr2R 10442651 intron Galphao + chr2R_7_10440001 chr2R_10440001 RAL-338 287 chr2R 10454096 10454124 chr2R 10454173 10454200 5 75 8.0 7.0 7.5 0.6 104 chr2R 10454096 intron,intron Galphao +,Cyp49a1 - chr2R 10454148 intron,intron Galphao +,Cyp49a1 - chr2R 10454200 intron,intron Galphao +,Cyp49a1 - chr2R_5_10450001 chr2R_10450001 RAL-338 288 chr2R 10538779 10538798 chr2R 10538929 10538947 4 150 5.5 8.0 6.8 0.5 168 chr2R 10538779 intron lola - chr2R 10538863 intron lola - chr2R 10538947 intron lola - chr2R_4_10535001 chr2R_10535001 RAL-338 289 chr2R 10686389 10686415 chr2R 10686466 10686492 4 77 5.0 5.5 5.2 0.6 103 chr2R 10686389 intron stan + chr2R 10686440 intron stan + chr2R 10686492 intron stan + chr2R_4_10685001 chr2R_10685001 RAL-338 290 chr2R 11019876 11019912 chr2R 11024942 11024957 jockey 5 5060 0.5 2.0 1.2 2.3 5081 chr2R 11019876 intron luna - chr2R 11022416 intron luna - chr2R 11024957 intron luna - chr2R_5_11020001 chr2R_11020001 RAL-338 291 chr2R 11161098 11161132 chr2R 11161354 11161378 4 254 8.0 6.5 7.2 0.5 280 chr2R 11161098 intron,intron CG13229 -,shn + chr2R 11161238 intron,intron CG13229 -,shn + chr2R 11161378 intron,intron CG13229 -,shn + chr2R_4_11160001 chr2R_11160001 RAL-338 292 chr2R 11207823 11207839 chr2R 11208007 11208030 BS 4 190 6.0 0.5 3.2 1.0 207 chr2R 11207823 intron shn + chr2R 11207926 intron shn + chr2R 11208030 intron shn + chr2R_4_11205001 chr2R_11205001 RAL-338 293 chr2R 11472659 11472676 chr2R 11473856 11473872 pogo 5 1197 0.5 0.0 0.2 4.2 1213 chr2R 11472659 intergenic not near genes chr2R 11473266 intergenic not near genes chr2R 11473872 intergenic not near genes chr2R_5_11470001 chr2R_11470001 RAL-338 294 chr2R 11485118 11485136 chr2R 11485200 11485218 5 79 7.5 7.5 7.5 0.6 100 chr2R 11485118 intron inv + chr2R 11485168 intron inv + chr2R 11485218 intron inv + chr2R_5_11485001 chr2R_11485001 RAL-338 295 chr2R 11710827 11710852 chr2R 11711556 11711582 5 729 3.5 3.0 3.2 1.2 755 chr2R 11710827 intergenic not near genes chr2R 11711204 intergenic not near genes chr2R 11711582 intergenic not near genes chr2R_5_11710001 chr2R_11710001 RAL-338 296 chr2R 11787442 11787461 chr2R 11787528 11787532 4 82 7.0 6.0 6.5 0.5 90 chr2R 11787442 intron ths + chr2R 11787487 intron ths + chr2R 11787532 intron ths + chr2R_4_11785001 chr2R_11785001 RAL-338 297 chr2R 12187472 12187508 chr2R 12190088 12190124 25 2619 58.0 45.5 51.8 0.5 2652 chr2R 12187472 exon Cyp6g1 + chr2R 12188798 exon Cyp6g2 - chr2R 12190124 exon Cyp6g2 - chr2R_25_12185001 chr2R_12185001 RAL-338 298 chr2R 12501687 12501724 chr2R 12503849 12503880 Rt1c 4 2160 3.5 2.0 2.8 1.1 2193 chr2R 12501687 intron fdl - chr2R 12502784 intron fdl - chr2R 12503880 intron fdl - chr2R_4_12500001 chr2R_12500001 RAL-338 299 chr2R 12540482 12540494 chr2R 12540563 12540576 6 82 11.5 3.5 7.5 0.7 94 chr2R 12540482 intron fra + chr2R 12540529 intron fra + chr2R 12540576 intron fra + chr2R_6_12540001 chr2R_12540001 RAL-338 300 chr2R 12789305 12789326 chr2R 12797660 12797688 roo 4 8360 2.0 1.0 1.5 1.6 8383 chr2R 12789305 intron,3` UTR sca +,CR45137 - chr2R 12793496 intron,intron sca +,CR45137 - chr2R 12797688 intron,3` UTR sca +,CR45137 - chr2R_4_12790001 chr2R_12790001 RAL-338 301 chr2R 13136843 13136866 chr2R 13141638 13141654 Doc 7 4793 2.0 4.0 3.0 1.8 4811 chr2R 13136843 exon Cap-G + chr2R 13139248 intron Cap-G + chr2R 13141654 intron Cap-G + chr2R_7_13135001 chr2R_13135001 RAL-338 302 chr2R 13218316 13218395 chr2R 13218398 13218472 4 80 1.5 2.5 2.0 1.3 156 chr2R 13218316 intron CG4630 - chr2R 13218394 intron CG4630 - chr2R 13218472 intron CG4630 - chr2R_4_13215001 chr2R_13215001 RAL-338 303 chr2R 13566260 13566278 chr2R 13566340 13566355 4 79 2.0 0.5 1.2 1.8 95 chr2R 13566260 intergenic not near genes chr2R 13566308 intergenic not near genes chr2R 13566355 intergenic not near genes chr2R_4_13565001 chr2R_13565001 RAL-338 304 chr2R 13721212 13721224 chr2R 13721292 13721294 4 77 3.0 4.0 3.5 0.9 82 chr2R 13721212 intron fas + chr2R 13721253 intron fas + chr2R 13721294 intron fas + chr2R_4_13720001 chr2R_13720001 RAL-338 305 chr2R 13768980 13769008 chr2R 13769079 13769107 7 99 1.5 1.0 1.2 3.2 127 chr2R 13768980 intergenic not near genes chr2R 13769044 intergenic not near genes chr2R 13769107 intergenic not near genes chr2R_7_13765001 chr2R_13765001 RAL-338 306 chr2R 13905607 13905634 chr2R 13907589 13907616 Rt1a 4 1980 3.0 1.5 2.2 1.2 2009 chr2R 13905607 intron shot - chr2R 13906612 intron shot - chr2R 13907616 intron shot - chr2R_4_13905001 chr2R_13905001 RAL-338 307 chr2R 14336025 14336059 chr2R 14336117 14336152 6 92 5.0 3.5 4.2 1.2 127 chr2R 14336025 intron Shroom + chr2R 14336088 intron Shroom + chr2R 14336152 intron Shroom + chr2R_6_14335001 chr2R_14335001 RAL-338 308 chr2R 14435521 14435550 chr2R 14435596 14435625 4 80 4.5 2.5 3.5 0.9 104 chr2R 14435521 intergenic Oaz + chr2R 14435573 intergenic Oaz + chr2R 14435625 intergenic Oaz + chr2R_4_14435001 chr2R_14435001 RAL-338 309 chr2R 14467309 14467324 chr2R 14476467 14476482 roo 7 9158 1.5 5.5 3.5 1.6 9173 chr2R 14467309 intergenic not near genes chr2R 14471896 intergenic not near genes chr2R 14476482 5` UTR CR44462 + chr2R_7_14470001 chr2R_14470001 RAL-338 310 chr2R 14538965 14538989 chr2R 14539040 14539057 5 70 4.0 3.5 3.8 1.0 92 chr2R 14538965 intron ttv + chr2R 14539011 intron ttv + chr2R 14539057 intron ttv + chr2R_5_14535001 chr2R_14535001 RAL-338 311 chr2R 14681895 14681921 chr2R 14681982 14682008 5 86 6.5 5.0 5.8 0.7 113 chr2R 14681895 intron mspo - chr2R 14681952 intron mspo - chr2R 14682008 intron mspo - chr2R_5_14680001 chr2R_14680001 RAL-338 312 chr2R 14719574 14719596 chr2R 14719657 14719677 4 82 7.0 8.0 7.5 0.5 103 chr2R 14719574 intergenic not near genes chr2R 14719626 intergenic not near genes chr2R 14719677 intergenic not near genes chr2R_4_14715001 chr2R_14715001 RAL-338 313 chr2R 14794794 14794811 chr2R 14794867 14794893 4 80 4.5 2.5 3.5 0.9 99 chr2R 14794794 intron kn - chr2R 14794844 intron kn - chr2R 14794893 intron kn - chr2R_4_14790001 chr2R_14790001 RAL-338 314 chr2R 14855035 14855064 chr2R 14855127 14855154 6 91 1.5 0.0 0.8 3.3 119 chr2R 14855035 5` UTR Ciao1 - chr2R 14855094 intergenic Ciao1 -,HPS1 + chr2R 14855154 intergenic Ciao1 -,HPS1 + chr2R_6_14855001 chr2R_14855001 RAL-338 315 chr2R 14922149 14922166 chr2R 14922224 14922241 5 73 4.5 3.5 4.0 1.0 92 chr2R 14922149 intron CG10249 - chr2R 14922195 intron CG10249 - chr2R 14922241 intron CG10249 - chr2R_5_14920001 chr2R_14920001 RAL-338 316 chr2R 15149233 15149241 chr2R 15149422 15149431 4 188 14.5 13.0 13.8 0.3 198 chr2R 15149233 3` UTR CG7544 + chr2R 15149332 3` UTR CG7544 + chr2R 15149431 3` UTR CG7544 + chr2R_4_15145001 chr2R_15145001 RAL-338 317 chr2R 15183044 15183072 chr2R 15183135 15183163 5 91 4.5 5.5 5.0 0.8 119 chr2R 15183044 intron igl + chr2R 15183104 intron igl + chr2R 15183163 intron igl + chr2R_5_15180001 chr2R_15180001 RAL-338 318 chr2R 15383424 15383439 chr2R 15388456 15388493 8 5036 16.0 17.5 16.8 0.4 5069 chr2R 15383424 exon SRPK + chr2R 15385958 3` UTR SRPK + chr2R 15388493 intergenic not near genes chr2R_8_15385001 chr2R_15385001 RAL-338 319 chr2R 15390409 15390416 chr2R 15390503 15390510 5 94 5.5 6.0 5.8 0.7 101 chr2R 15390409 intergenic not near genes chr2R 15390460 intergenic not near genes chr2R 15390510 intergenic not near genes chr2R_5_15390001 chr2R_15390001 RAL-338 320 chr2R 15700021 15700277 chr2R 15700110 15700372 7 93 1.5 3.0 2.2 2.2 351 chr2R 15700021 intron,5` UTR CG30080 -,CG42662 - chr2R 15700196 intron,5` UTR CG30080 -,CG42662 - chr2R 15700372 intron,5` UTR CG30080 -,CG42662 - chr2R_7_15700001 chr2R_15700001 RAL-338 321 chr2R 15873855 15873877 chr2R 15873949 15873971 5 93 6.5 4.0 5.2 0.8 116 chr2R 15873855 intron sli - chr2R 15873913 intron sli - chr2R 15873971 intron sli - chr2R_5_15870001 chr2R_15870001 RAL-338 322 chr2R 16496336 16496347 chr2R 16496417 16496428 4 80 6.5 3.0 4.8 0.7 92 chr2R 16496336 intergenic not near genes chr2R 16496382 intergenic not near genes chr2R 16496428 intergenic CG7813 - chr2R_4_16495001 chr2R_16495001 RAL-338 323 chr2R 16511799 16511831 chr2R 16511961 16511983 7 159 2.0 4.0 3.0 1.8 184 chr2R 16511799 intron Sema-2a + chr2R 16511891 intron Sema-2a + chr2R 16511983 intron Sema-2a + chr2R_7_16510001 chr2R_16510001 RAL-338 324 chr2R 16784459 16784471 chr2R 16784547 16784559 4 88 5.5 4.5 5.0 0.7 100 chr2R 16784459 intron CG5522 + chr2R 16784509 intron CG5522 + chr2R 16784559 intron CG5522 + chr2R_4_16780001 chr2R_16780001 RAL-338 325 chr2R 17147241 17147260 chr2R 17152272 17152291 jockey 5 5031 3.0 5.5 4.2 1.0 5050 chr2R 17147241 intergenic not near genes chr2R 17149766 intergenic not near genes chr2R 17152291 intergenic not near genes chr2R_5_17145001 chr2R_17145001 RAL-338 326 chr2R 17236512 17236539 chr2R 17241712 17241743 copia 8 5203 1.0 0.5 0.8 4.4 5231 chr2R 17236512 intron mbl + chr2R 17239128 intron mbl + chr2R 17241743 intron mbl + chr2R_8_17235001 chr2R_17235001 RAL-338 327 chr2R 17389663 17389689 chr2R 17389763 17389790 6 100 6.5 9.0 7.8 0.7 127 chr2R 17389663 intergenic not near genes chr2R 17389726 intergenic not near genes chr2R 17389790 intergenic not near genes chr2R_6_17385001 chr2R_17385001 RAL-338 328 chr2R 17465111 17465134 chr2R 17465192 17465215 4 80 6.5 6.0 6.2 0.6 104 chr2R 17465111 3` UTR CG14478 + chr2R 17465163 3` UTR CG14478 + chr2R 17465215 3` UTR CG14478 + chr2R_4_17465001 chr2R_17465001 RAL-338 329 chr2R 17627759 17627780 chr2R 17628086 17628107 5 324 7.5 10.0 8.8 0.5 348 chr2R 17627759 intron CG10936 - chr2R 17627933 intron CG10936 - chr2R 17628107 intron CG10936 - chr2R_5_17625001 chr2R_17625001 RAL-338 330 chr2R 17784029 17784050 chr2R 17784268 17784291 pogo 7 240 1.0 0.5 0.8 3.9 262 chr2R 17784029 intergenic mir-31a - chr2R 17784160 intergenic mir-31a - chr2R 17784291 intergenic mir-31a - chr2R_7_17780001 chr2R_17780001 RAL-338 331 chr2R 17997156 17997179 chr2R 17997237 17997261 4 82 4.0 6.0 5.0 0.7 105 chr2R 17997156 intron dpr13 - chr2R 17997208 intron dpr13 - chr2R 17997261 intron dpr13 - chr2R_4_17995001 chr2R_17995001 RAL-338 332 chr2R 18402511 18402531 chr2R 18402597 18402619 4 88 2.0 1.5 1.8 1.4 108 chr2R 18402511 intergenic not near genes chr2R 18402565 intergenic not near genes chr2R 18402619 intergenic not near genes chr2R_4_18400001 chr2R_18400001 RAL-338 333 chr2R 18403523 18403531 chr2R 18406429 18406443 4 2910 9.0 9.0 9.0 0.4 2920 chr2R 18403523 exon GstE4 + chr2R 18404983 exon GstE5 + chr2R 18406443 exon GstE6 + chr2R_4_18400001 chr2R_18400001 RAL-338 334 chr2R 18408280 18408305 chr2R 18408401 18408426 4 121 9.0 3.0 6.0 0.6 146 chr2R 18408280 exon GstE8 + chr2R 18408353 exon GstE8 + chr2R 18408426 exon GstE8 + chr2R_4_18405001 chr2R_18405001 RAL-338 335 chr2R 18483027 18483053 chr2R 18483266 18483292 4 238 3.0 5.5 4.2 0.8 265 chr2R 18483027 intron CG30116 - chr2R 18483160 intron CG30116 - chr2R 18483292 intron CG30116 - chr2R_4_18480001 chr2R_18480001 RAL-338 336 chr2R 18526592 18526622 chr2R 18526674 18526689 11 77 11.5 11.0 11.2 0.9 97 chr2R 18526592 intergenic CG43066 + chr2R 18526640 intergenic CG43066 + chr2R 18526689 intergenic CG43066 + chr2R_11_18525001 chr2R_18525001 RAL-338 337 chr2R 18524104 18524127 chr2R 18526782 18526805 9 2679 22.5 20.5 21.5 0.4 2701 chr2R 18524104 intron CG43066 + chr2R 18525454 3` UTR CG43066 + chr2R 18526805 intergenic CG43066 + chr2R_9_18525001 chr2R_18525001 RAL-338 338 chr2R 18575818 18575824 chr2R 18581985 18581997 3S18 5 6177 1.5 2.5 2.0 1.7 6179 chr2R 18575818 intron GEFmeso - chr2R 18578908 intron GEFmeso - chr2R 18581997 intron GEFmeso - chr2R_5_18575001 chr2R_18575001 RAL-338 339 chr2R 18590866 18590901 chr2R 18600018 18600053 roo 8 9150 1.5 4.0 2.8 2.1 9187 chr2R 18590866 intron GEFmeso - chr2R 18595460 intron GEFmeso - chr2R 18600053 intron GEFmeso - chr2R_8_18595001 chr2R_18595001 RAL-338 340 chr2R 19039212 19039226 chr2R 19039353 19039368 4 142 9.5 8.5 9.0 0.4 156 chr2R 19039212 intergenic not near genes chr2R 19039290 intergenic not near genes chr2R 19039368 intergenic not near genes chr2R_4_19035001 chr2R_19035001 RAL-338 341 chr2R 19281462 19281497 chr2R 19281549 19281583 5 87 5.0 8.0 6.5 0.7 121 chr2R 19281462 3` UTR CG11906 - chr2R 19281522 3` UTR CG11906 - chr2R 19281583 3` UTR CG11906 - chr2R_5_19280001 chr2R_19280001 RAL-338 342 chr2R 19359041 19359068 chr2R 19359124 19359151 6 83 6.0 6.5 6.2 0.8 110 chr2R 19359041 intron CG11961 + chr2R 19359096 intron CG11961 + chr2R 19359151 intron CG11961 + chr2R_6_19355001 chr2R_19355001 RAL-338 343 chr2R 19535582 19535599 chr2R 19535653 19535683 4 81 5.5 7.5 6.5 0.5 101 chr2R 19535582 intron sm - chr2R 19535632 intron sm - chr2R 19535683 intron sm - chr2R_4_19535001 chr2R_19535001 RAL-338 344 chr2R 19570141 19570165 chr2R 19570229 19570235 4 84 6.5 7.5 7.0 0.5 94 chr2R 19570141 intron sm - chr2R 19570188 intron sm - chr2R 19570235 intron sm - chr2R_4_19570001 chr2R_19570001 RAL-338 345 chr2R 19588751 19588778 chr2R 19588827 19588856 4 77 2.0 5.5 3.8 0.8 105 chr2R 19588751 intron sm - chr2R 19588804 intron sm - chr2R 19588856 intron sm - chr2R_4_19585001 chr2R_19585001 RAL-338 346 chr2R 19776598 19776629 chr2R 19779921 19779951 jockey 8 3322 0.5 0.5 0.5 5.3 3353 chr2R 19776598 intergenic not near genes chr2R 19778274 intergenic not near genes chr2R 19779951 intergenic not near genes chr2R_8_19775001 chr2R_19775001 RAL-338 347 chr2R 19914843 19914875 chr2R 19922255 19922287 mdg1 5 7412 1.0 4.5 2.8 1.3 7444 chr2R 19914843 intergenic not near genes chr2R 19918565 intergenic not near genes chr2R 19922287 intergenic not near genes chr2R_5_19915001 chr2R_19915001 RAL-338 348 chr2R 19957441 19957458 chr2R 19962643 19962660 copia 6 5202 3.0 4.0 3.5 1.3 5219 chr2R 19957441 intergenic CG44623 + chr2R 19960050 intergenic not near genes chr2R 19962660 intergenic not near genes chr2R_6_19960001 chr2R_19960001 RAL-338 349 chr2R 20159167 20159186 chr2R 20159279 20159302 4 112 7.0 5.0 6.0 0.6 135 chr2R 20159167 intergenic not near genes chr2R 20159234 intergenic not near genes chr2R 20159302 intergenic not near genes chr2R_4_20155001 chr2R_20155001 RAL-338 350 chr2R 20212830 20212850 chr2R 20213017 20213037 4 182 9.5 11.5 10.5 0.3 207 chr2R 20212830 intergenic CG16894 - chr2R 20212934 intergenic CG16894 - chr2R 20213037 intergenic CG16894 - chr2R_4_20210001 chr2R_20210001 RAL-338 351 chr2R 20380070 20380091 chr2R 20380153 20380165 5 81 11.0 9.5 10.2 0.4 95 chr2R 20380070 intergenic not near genes chr2R 20380118 intergenic not near genes chr2R 20380165 intergenic not near genes chr2R_5_20380001 chr2R_20380001 RAL-338 352 chr2R 20387674 20387684 chr2R 20387758 20387776 4 90 2.5 4.0 3.2 1.0 102 chr2R 20387674 intergenic not near genes chr2R 20387725 intergenic not near genes chr2R 20387776 intergenic not near genes chr2R_4_20385001 chr2R_20385001 RAL-338 353 chr2R 20414499 20414518 chr2R 20414581 20414595 5 81 3.5 10.5 7.0 0.6 96 chr2R 20414499 intergenic not near genes chr2R 20414547 intergenic not near genes chr2R 20414595 intergenic not near genes chr2R_5_20410001 chr2R_20410001 RAL-338 354 chr2R 20523040 20523061 chr2R 20523151 20523172 5 110 6.0 7.5 6.8 0.6 132 chr2R 20523040 intergenic not near genes chr2R 20523106 intergenic not near genes chr2R 20523172 intergenic not near genes chr2R_5_20520001 chr2R_20520001 RAL-338 355 chr2R 20690762 20690787 chr2R 20690836 20690863 4 76 5.0 5.0 5.0 0.7 101 chr2R 20690762 intergenic not near genes chr2R 20690812 intergenic not near genes chr2R 20690863 intergenic not near genes chr2R_4_20690001 chr2R_20690001 RAL-338 356 chr2R 20739444 20739479 chr2R 20744212 20744228 F-element 7 4762 1.5 3.0 2.2 2.2 4784 chr2R 20739444 intron dpr + chr2R 20741836 intron dpr + chr2R 20744228 intron dpr + chr2R_7_20740001 chr2R_20740001 RAL-338 357 chr2R 21110790 21110821 chr2R 21110883 21110914 5 93 5.0 4.0 4.5 0.9 124 chr2R 21110790 intron ktub + chr2R 21110852 intron ktub + chr2R 21110914 intron ktub + chr2R_5_21110001 chr2R_21110001 RAL-338 358 chr2R 21472319 21472339 chr2R 21472388 21472417 6 76 1.5 2.0 1.8 2.1 98 chr2R 21472319 intron Sdc - chr2R 21472368 intron Sdc - chr2R 21472417 intron Sdc - chr2R_6_21470001 chr2R_21470001 RAL-338 359 chr2R 21597792 21597823 chr2R 21598088 21598120 4 297 18.0 18.0 18.0 0.2 328 chr2R 21597792 intergenic not near genes chr2R 21597956 intergenic not near genes chr2R 21598120 intergenic not near genes chr2R_4_21595001 chr2R_21595001 RAL-338 360 chr2R 21730260 21730284 chr2R 21730454 21730456 4 188 5.0 8.5 6.8 0.5 196 chr2R 21730260 intergenic not near genes chr2R 21730358 intergenic not near genes chr2R 21730456 intergenic not near genes chr2R_4_21730001 chr2R_21730001 RAL-338 361 chr2R 21738285 21738308 chr2R 21747445 21747465 roo 9 9156 0.5 1.0 0.8 5.0 9180 chr2R 21738285 intergenic not near genes chr2R 21742875 intergenic not near genes chr2R 21747465 intergenic not near genes chr2R_9_21740001 chr2R_21740001 RAL-338 362 chr2R 21983246 21983276 chr2R 21983325 21983355 5 77 5.0 6.0 5.5 0.8 109 chr2R 21983246 intergenic not near genes chr2R 21983300 intergenic not near genes chr2R 21983355 intergenic not near genes chr2R_5_21980001 chr2R_21980001 RAL-338 363 chr2R 22072685 22072704 chr2R 22072770 22072789 4 84 3.5 2.0 2.8 1.1 104 chr2R 22072685 intron CG11474 - chr2R 22072737 intron CG11474 - chr2R 22072789 intron CG11474 - chr2R_4_22070001 chr2R_22070001 RAL-338 364 chr2R 22109287 22109315 chr2R 22109364 22109392 5 77 7.5 8.5 8.0 0.6 105 chr2R 22109287 intron Vrp1 - chr2R 22109340 intron Vrp1 - chr2R 22109392 intron Vrp1 - chr2R_5_22105001 chr2R_22105001 RAL-338 365 chr2R 22185676 22185705 chr2R 22185775 22185804 5 99 2.0 0.0 1.0 2.5 128 chr2R 22185676 3` UTR MED16 + chr2R 22185740 3` UTR MED16 + chr2R 22185804 3` UTR MED16 + chr2R_5_22185001 chr2R_22185001 RAL-338 366 chr2R 22273188 22273204 chr2R 22273287 22273302 4 99 11.0 9.5 10.2 0.4 114 chr2R 22273188 intron dve + chr2R 22273245 intron dve + chr2R 22273302 intron dve + chr2R_4_22270001 chr2R_22270001 RAL-338 367 chr2R 22292072 22292104 chr2R 22292158 22292191 9 86 0.0 3.0 1.5 3.6 119 chr2R 22292072 5` UTR CR43422 + chr2R 22292132 5` UTR CR43422 + chr2R 22292191 5` UTR CR43422 + chr2R_9_22290001 chr2R_22290001 RAL-338 368 chr2R 22349691 22349720 chr2R 22351475 22351503 jockey 8 1780 4.0 2.0 3.0 2.0 1812 chr2R 22349691 intron Liprin-gamma - chr2R 22350597 intron Liprin-gamma - chr2R 22351503 intron Liprin-gamma - chr2R_8_22350001 chr2R_22350001 RAL-338 369 chr2R 22360380 22360399 chr2R 22360813 22360829 jockey 4 432 3.5 5.0 4.2 0.8 449 chr2R 22360380 intron Liprin-gamma - chr2R 22360604 intron Liprin-gamma - chr2R 22360829 intron Liprin-gamma - chr2R_4_22360001 chr2R_22360001 RAL-338 370 chr2R 22377803 22377833 chr2R 22377889 22377919 9 86 1.5 0.0 0.8 5.0 116 chr2R 22377803 3` UTR Rtf1 + chr2R 22377861 3` UTR Rtf1 + chr2R 22377919 3` UTR Rtf1 + chr2R_9_22375001 chr2R_22375001 RAL-338 371 chr2R 22525755 22525780 chr2R 22529304 22529335 jockey 6 3554 1.5 3.5 2.5 1.7 3580 chr2R 22525755 intron px - chr2R 22527545 intron px - chr2R 22529335 intron px - chr2R_6_22525001 chr2R_22525001 RAL-338 372 chr2R 22541702 22541728 chr2R 22542129 22542153 4 424 7.5 7.5 7.5 0.5 451 chr2R 22541702 intron px - chr2R 22541928 intron px - chr2R 22542153 intron px - chr2R_4_22540001 chr2R_22540001 RAL-338 373 chr2R 22774961 22774996 chr2R 22775380 22775415 jockey 5 419 2.0 1.5 1.8 1.8 454 chr2R 22774961 intron CG42260 - chr2R 22775188 intron CG42260 - chr2R 22775415 intron CG42260 - chr2R_5_22775001 chr2R_22775001 RAL-338 374 chr2R 22794815 22794827 chr2R 22794884 22794896 5 77 8.5 9.5 9.0 0.5 81 chr2R 22794815 intron CG42260 - chr2R 22794856 intron CG42260 - chr2R 22794896 intron CG42260 - chr2R_5_22790001 chr2R_22790001 RAL-338 375 chr2R 22907410 22907433 chr2R 22907502 22907526 4 93 8.0 7.0 7.5 0.5 116 chr2R 22907410 intron nahoda + chr2R 22907468 intron nahoda + chr2R 22907526 intron nahoda + chr2R_4_22905001 chr2R_22905001 RAL-338 376 chr2R 23052669 23052683 chr2R 23052741 23052758 4 75 6.5 6.0 6.2 0.6 89 chr2R 23052669 intergenic not near genes chr2R 23052714 intergenic not near genes chr2R 23052758 intergenic not near genes chr2R_4_23050001 chr2R_23050001 RAL-338 377 chr2R 23061754 23061774 chr2R 23061830 23061850 4 96 1.5 1.0 1.2 1.8 96 chr2R 23061754 3` UTR l(2)06496 - chr2R 23061802 3` UTR l(2)06496 - chr2R 23061850 3` UTR l(2)06496 - chr2R_4_23060001 chr2R_23060001 RAL-338 378 chr2R 23369378 23369403 chr2R 23369455 23369480 5 76 10.5 12.5 11.5 0.4 102 chr2R 23369378 exon Ice1 + chr2R 23369429 exon Ice1 + chr2R 23369480 exon Ice1 + chr2R_5_23365001 chr2R_23365001 RAL-338 379 chr2R 23529587 23529606 chr2R 23537155 23537180 412 7 7569 3.0 2.5 2.8 1.8 7593 chr2R 23529587 intron bw - chr2R 23533384 intron bw - chr2R 23537180 exon bw - chr2R_7_23530001 chr2R_23530001 RAL-338 380 chr2R 23607038 23607189 chr2R 23607119 23607282 6 86 0.0 1.0 0.5 4.0 244 chr2R 23607038 intron CG17664 - chr2R 23607160 intron CG17664 - chr2R 23607282 intron CG17664 - chr2R_6_23605001 chr2R_23605001 RAL-338 381 chr2R 23636733 23636740 chr2R 23636811 23636814 5 77 8.0 7.0 7.5 0.6 81 chr2R 23636733 intron retn + chr2R 23636774 intron retn + chr2R 23636814 intron retn + chr2R_5_23635001 chr2R_23635001 RAL-338 382 chr2R 23726231 23726252 chr2R 23726321 23726342 8 89 9.5 6.5 8.0 0.9 111 chr2R 23726231 intron Sesn + chr2R 23726286 intron Sesn + chr2R 23726342 intron Sesn + chr2R_8_23725001 chr2R_23725001 RAL-338 383 chr2R 23914297 23914319 chr2R 23921921 23921941 412 6 7623 4.0 1.0 2.5 1.7 7644 chr2R 23914297 exon kcc + chr2R 23918119 intron kcc + chr2R 23921941 intron kcc + chr2R_6_23915001 chr2R_23915001 RAL-338 384 chr2R 24031380 24031406 chr2R 24031464 24031490 5 84 2.0 1.5 1.8 1.8 110 chr2R 24031380 5` UTR CG30172 - chr2R 24031435 intergenic CG30172 -,Chi - chr2R 24031490 intergenic Chi -,CG30172 - chr2R_5_24030001 chr2R_24030001 RAL-338 385 chr2R 24320188 24320205 chr2R 24320265 24320280 5 74 0.0 2.5 1.2 2.3 92 chr2R 24320188 intergenic not near genes chr2R 24320234 intergenic not near genes chr2R 24320280 intergenic not near genes chr2R_5_24320001 chr2R_24320001 RAL-338 386 chr2R 24353426 24353454 chr2R 24361788 24361813 roo 4 8361 0.0 3.0 1.5 1.6 8387 chr2R 24353426 intron,intron bs +,CR44811 - chr2R 24357620 intron,intron bs +,CR44811 - chr2R 24361813 intron,intron bs +,CR44811 - chr2R_4_24355001 chr2R_24355001 RAL-338 387 chr2R 24430920 24430949 chr2R 24431008 24431037 6 85 0.0 1.5 0.8 3.3 117 chr2R 24430920 intergenic CG15873 -,Pgam5-2 - chr2R 24430978 intergenic CG15873 -,Pgam5-2 - chr2R 24431037 intergenic Pgam5-2 -,CG15873 - chr2R_6_24430001 chr2R_24430001 RAL-338 388 chr2R 24509320 24509338 chr2R 24509390 24509420 4 80 6.5 5.5 6.0 0.6 100 chr2R 24509320 intergenic Letm1 - chr2R 24509370 intergenic Letm1 - chr2R 24509420 intergenic Letm1 - chr2R_4_24505001 chr2R_24505001 RAL-338 389 chr2R 24592945 24592968 chr2R 24593038 24593061 5 89 7.0 7.0 7.0 0.6 116 chr2R 24592945 intron pio + chr2R 24593003 intron pio + chr2R 24593061 intron pio + chr2R_5_24590001 chr2R_24590001 RAL-338 390 chr2R 24609127 24609152 chr2R 24609216 24609240 5 89 6.5 8.5 7.5 0.6 113 chr2R 24609127 exon CG42360 + chr2R 24609184 exon CG42360 + chr2R 24609240 exon CG42360 + chr2R_5_24605001 chr2R_24605001 RAL-338 391 chr2R 24727891 24727916 chr2R 24735390 24735424 mdg1 8 7505 1.0 3.0 2.0 2.7 7533 chr2R 24727891 intron Mid1 - chr2R 24731658 intron Mid1 - chr2R 24735424 intron Mid1 - chr2R_8_24730001 chr2R_24730001 RAL-338 392 chr2R 24763610 24763643 chr2R 24765586 24765618 G2 8 1973 1.5 3.0 2.2 2.5 2008 chr2R 24763610 exon CG3894 + chr2R 24764614 intron CG3894 + chr2R 24765618 exon CG3894 + chr2R_8_24760001 chr2R_24760001 RAL-338 393 chr2R 24813413 24813442 chr2R 24813511 24813540 4 98 10.5 10.5 10.5 0.3 127 chr2R 24813413 intergenic not near genes chr2R 24813476 intergenic not near genes chr2R 24813540 intergenic not near genes chr2R_4_24810001 chr2R_24810001 RAL-338 394 chr2R 24884052 24884077 chr2R 24884134 24884158 5 81 2.0 1.0 1.5 2.0 106 chr2R 24884052 intron NKAIN + chr2R 24884105 intron NKAIN + chr2R 24884158 intron NKAIN + chr2R_5_24880001 chr2R_24880001 RAL-338 395 chr2R 25004899 25004917 chr2R 25004977 25004979 4 74 1.0 1.0 1.0 2.0 80 chr2R 25004899 intron zip - chr2R 25004939 intron zip - chr2R 25004979 intron zip - chr2R_4_25000001 chr2R_25000001 RAL-338 396 chr2R 25014542 25014571 chr2R 25014618 25014647 7 76 3.0 1.5 2.2 2.2 105 chr2R 25014542 intron uzip + chr2R 25014594 intron uzip + chr2R 25014647 intron uzip + chr2R_7_25010001 chr2R_25010001 RAL-338 397 chr2R 25022649 25022661 chr2R 25022729 25022745 5 83 0.0 1.0 0.5 3.3 96 chr2R 25022649 intron uzip + chr2R 25022697 intron uzip + chr2R 25022745 intron uzip + chr2R_5_25020001 chr2R_25020001 RAL-338 398 chr2R 25081619 25081625 chr2R 25082708 25082720 4 1093 6.0 8.0 7.0 0.5 1101 chr2R 25081619 intron gol - chr2R 25082170 intron gol - chr2R 25082720 intron gol - chr2R_4_25080001 chr2R_25080001 RAL-338 399 chr2R 25181113 25181136 chr2R 25181210 25181233 5 96 0.5 3.0 1.8 1.8 120 chr2R 25181113 intergenic not near genes chr2R 25181173 intergenic not near genes chr2R 25181233 intergenic not near genes chr2R_5_25180001 chr2R_25180001 RAL-338 400 chr3L 68989 69014 chr3L 69075 69101 4 86 1.5 3.0 2.2 1.2 112 chr3L 68989 3` UTR Lsp1gamma + chr3L 69045 intergenic Lsp1gamma +,CR44510 + chr3L 69101 intergenic CR44510 +,Lsp1gamma + chr3L_4_65001 chr3L_65001 RAL-338 401 chr3L 88742 88767 chr3L 90662 90687 5 1920 1.5 1.5 1.5 2.0 1945 chr3L 88742 intergenic not near genes chr3L 89714 intergenic not near genes chr3L 90687 intergenic not near genes chr3L_5_85001 chr3L_85001 RAL-338 402 chr3L 390959 390984 chr3L 391064 391072 7 103 1.0 1.0 1.0 3.5 113 chr3L 390959 intron trh - chr3L 391016 intron trh - chr3L 391072 intron trh - chr3L_7_390001 chr3L_390001 RAL-338 403 chr3L 402687 402716 chr3L 409740 409766 297 10 7050 1.5 1.0 1.2 4.5 7079 chr3L 402687 intergenic not near genes chr3L 406226 intergenic not near genes chr3L 409766 intergenic not near genes chr3L_10_405001 chr3L_405001 RAL-338 404 chr3L 421048 421079 chr3L 421143 421175 14 95 3.5 2.5 3.0 3.5 127 chr3L 421048 intergenic not near genes chr3L 421112 intergenic not near genes chr3L 421175 intergenic not near genes chr3L_14_420001 chr3L_420001 RAL-338 405 chr3L 514282 514302 chr3L 514359 514372 4 75 1.0 0.5 0.8 2.2 90 chr3L 514282 intron klar - chr3L 514327 intron klar - chr3L 514372 intron klar - chr3L_4_510001 chr3L_510001 RAL-338 406 chr3L 746498 746523 chr3L 746583 746608 6 85 1.5 1.5 1.5 2.4 110 chr3L 746498 intron hng3 - chr3L 746553 intron hng3 - chr3L 746608 intron hng3 - chr3L_6_745001 chr3L_745001 RAL-338 407 chr3L 858004 858029 chr3L 866484 866490 Tirant 7 8475 2.0 2.0 2.0 2.3 8486 chr3L 858004 intergenic not near genes chr3L 862247 intergenic not near genes chr3L 866490 intergenic CG12502 + chr3L_7_860001 chr3L_860001 RAL-338 408 chr3L 925175 925205 chr3L 932601 932655 mdg1 6 7429 2.5 0.0 1.2 2.7 7480 chr3L 925175 intron Glut1 + chr3L 928915 intron Glut1 + chr3L 932655 intron Glut1 + chr3L_6_925001 chr3L_925001 RAL-338 409 chr3L 933934 933943 chr3L 934036 934046 4 103 2.0 5.5 3.8 0.8 112 chr3L 933934 intron Glut1 + chr3L 933990 intron Glut1 + chr3L 934046 intron Glut1 + chr3L_4_930001 chr3L_930001 RAL-338 410 chr3L 939771 939802 chr3L 940892 940923 jockey 6 1120 2.5 2.5 2.5 1.7 1152 chr3L 939771 intron Glut1 + chr3L 940347 intron Glut1 + chr3L 940923 intron Glut1 + chr3L_6_940001 chr3L_940001 RAL-338 411 chr3L 1015028 1015055 chr3L 1015139 1015166 7 110 2.0 4.0 3.0 1.8 138 chr3L 1015028 intron trio - chr3L 1015097 intron trio - chr3L 1015166 intron trio - chr3L_7_1015001 chr3L_1015001 RAL-338 412 chr3L 1021380 1021406 chr3L 1021460 1021486 8 79 2.0 3.0 2.5 2.3 106 chr3L 1021380 intron trio - chr3L 1021433 intron trio - chr3L 1021486 intron trio - chr3L_8_1020001 chr3L_1020001 RAL-338 413 chr3L 1039300 1039328 chr3L 1039758 1039761 10 454 3.5 1.5 2.5 2.9 461 chr3L 1039300 intron bab1 - chr3L 1039530 intron bab1 - chr3L 1039761 intron bab1 - chr3L_10_1035001 chr3L_1035001 RAL-338 414 chr3L 1040554 1040581 chr3L 1040638 1040664 8 84 2.5 2.0 2.2 2.5 110 chr3L 1040554 intron bab1 - chr3L 1040609 intron bab1 - chr3L 1040664 intron bab1 - chr3L_8_1040001 chr3L_1040001 RAL-338 415 chr3L 1109645 1109666 chr3L 1109725 1109754 4 85 1.5 3.5 2.5 1.1 109 chr3L 1109645 intergenic not near genes chr3L 1109700 intergenic not near genes chr3L 1109754 intergenic not near genes chr3L_4_1105001 chr3L_1105001 RAL-338 416 chr3L 1167673 1167699 chr3L 1167753 1167768 9 78 4.0 0.5 2.2 2.8 95 chr3L 1167673 intron bab2 - chr3L 1167720 intron bab2 - chr3L 1167768 intron bab2 - chr3L_9_1165001 chr3L_1165001 RAL-338 417 chr3L 1219594 1219620 chr3L 1227327 1227353 412 9 7732 3.0 2.0 2.5 2.6 7759 chr3L 1219594 intron mwh + chr3L 1223474 intron mwh + chr3L 1227353 intron mwh + chr3L_9_1220001 chr3L_1220001 RAL-338 418 chr3L 1310993 1311014 chr3L 1315853 1315874 5 4862 24.5 21.0 22.8 0.2 4881 chr3L 1310993 exon CG2469 + chr3L 1313434 intergenic CG9186 -,CG9153 + chr3L 1315874 exon CG9153 + chr3L_5_1310001 chr3L_1310001 RAL-338 419 chr3L 1346894 1346926 chr3L 1347142 1347175 5 249 2.0 3.0 2.5 1.4 281 chr3L 1346894 intron Ptp61F - chr3L 1347034 intron Ptp61F - chr3L 1347175 intron Ptp61F - chr3L_5_1345001 chr3L_1345001 RAL-338 420 chr3L 1356906 1357008 chr3L 1356986 1357096 5 84 3.5 3.5 3.5 1.1 190 chr3L 1356906 intron Ptp61F - chr3L 1357001 intron Ptp61F - chr3L 1357096 intron Ptp61F - chr3L_5_1355001 chr3L_1355001 RAL-338 421 chr3L 1463421 1463447 chr3L 1463502 1463527 10 80 3.0 2.5 2.8 2.6 106 chr3L 1463421 intron Ptp61F - chr3L 1463474 intron Ptp61F - chr3L 1463527 intron Ptp61F - chr3L_10_1460001 chr3L_1460001 RAL-338 422 chr3L 1505996 1506032 chr3L 1513593 1513629 17.6 13 7596 3.0 2.5 2.8 3.4 7633 chr3L 1505996 intron,intron Psa +,cue - chr3L 1509812 intron,intron Psa +,cue - chr3L 1513629 intron,intron Psa +,cue - chr3L_13_1505001 chr3L_1505001 RAL-338 423 chr3L 1754698 1754719 chr3L 1754813 1754838 5 118 1.5 3.0 2.2 1.6 140 chr3L 1754698 intron Cht2 - chr3L 1754768 intron Cht2 - chr3L 1754838 intron Cht2 - chr3L_5_1750001 chr3L_1750001 RAL-338 424 chr3L 1848640 1848661 chr3L 1848718 1848739 4 78 3.0 1.0 2.0 1.3 99 chr3L 1848640 intergenic not near genes chr3L 1848690 intergenic not near genes chr3L 1848739 intergenic not near genes chr3L_4_1845001 chr3L_1845001 RAL-338 425 chr3L 1991121 1991152 chr3L 1991198 1991226 6 76 3.0 0.0 1.5 2.4 105 chr3L 1991121 intergenic not near genes chr3L 1991174 intergenic not near genes chr3L 1991226 intergenic not near genes chr3L_6_1990001 chr3L_1990001 RAL-338 426 chr3L 2224386 2224420 chr3L 2224505 2224506 10 114 1.5 0.5 1.0 5.0 120 chr3L 2224386 intergenic not near genes chr3L 2224446 intergenic not near genes chr3L 2224506 intergenic not near genes chr3L_10_2220001 chr3L_2220001 RAL-338 427 chr3L 2303569 2303597 chr3L 2303707 2303733 7 132 0.5 3.5 2.0 2.3 164 chr3L 2303569 intergenic not near genes chr3L 2303651 intergenic not near genes chr3L 2303733 intergenic not near genes chr3L_7_2300001 chr3L_2300001 RAL-338 428 chr3L 2308002 2308035 chr3L 2308108 2308139 6 104 0.5 1.0 0.8 3.3 137 chr3L 2308002 intergenic not near genes chr3L 2308070 intergenic not near genes chr3L 2308139 intergenic not near genes chr3L_6_2305001 chr3L_2305001 RAL-338 429 chr3L 2331583 2331613 chr3L 2331660 2331689 6 77 0.5 1.0 0.8 3.3 106 chr3L 2331583 intron MsR1 + chr3L 2331636 intron MsR1 + chr3L 2331689 intron MsR1 + chr3L_6_2330001 chr3L_2330001 RAL-338 430 chr3L 2447506 2447536 chr3L 2456662 2456692 roo 12 9155 1.0 0.5 0.8 6.7 9186 chr3L 2447506 intron CG45186 + chr3L 2452099 intron CG45186 + chr3L 2456692 intron CG45186 + chr3L_12_2450001 chr3L_2450001 RAL-338 431 chr3L 2539047 2539074 chr3L 2539303 2539331 7 256 2.5 3.5 3.0 1.8 284 chr3L 2539047 intron Spn - chr3L 2539189 intron Spn - chr3L 2539331 intron Spn - chr3L_7_2535001 chr3L_2535001 RAL-338 432 chr3L 2554059 2554067 chr3L 2554137 2554143 4 77 2.5 0.5 1.5 1.6 84 chr3L 2554059 5` UTR Spn - chr3L 2554101 5` UTR Spn - chr3L 2554143 5` UTR Spn - chr3L_4_2550001 chr3L_2550001 RAL-338 433 chr3L 2795724 2795744 chr3L 2795847 2795866 4 122 0.5 1.5 1.0 2.0 142 chr3L 2795724 intron CG43444 - chr3L 2795795 intron CG43444 - chr3L 2795866 intron CG43444 - chr3L_4_2795001 chr3L_2795001 RAL-338 434 chr3L 2854491 2854504 chr3L 2854555 2854582 8 74 4.5 1.5 3.0 2.0 91 chr3L 2854491 intron CG43444 - chr3L 2854536 intron CG43444 - chr3L 2854582 intron CG43444 - chr3L_8_2850001 chr3L_2850001 RAL-338 435 chr3L 2927838 2927872 chr3L 2936115 2936149 Tirant 4 8277 1.5 0.0 0.8 2.2 8311 chr3L 2927838 intron Shab + chr3L 2931994 intron Shab + chr3L 2936149 intron Shab + chr3L_4_2930001 chr3L_2930001 RAL-338 436 chr3L 2987708 2987729 chr3L 2987790 2987811 6 82 2.0 0.0 1.0 3.0 103 chr3L 2987708 intergenic not near genes chr3L 2987760 intergenic not near genes chr3L 2987811 intergenic not near genes chr3L_6_2985001 chr3L_2985001 RAL-338 437 chr3L 2990600 2990617 chr3L 2990706 2990741 4 119 0.0 0.0 0.0 4.0 141 chr3L 2990600 intergenic not near genes chr3L 2990670 intergenic not near genes chr3L 2990741 intergenic not near genes chr3L_4_2990001 chr3L_2990001 RAL-338 438 chr3L 3050901 3050924 chr3L 3050988 3051011 5 82 2.5 2.0 2.2 1.6 110 chr3L 3050901 intron CG32485 + chr3L 3050956 intron CG32485 + chr3L 3051011 exon CG32485 + chr3L_5_3050001 chr3L_3050001 RAL-338 439 chr3L 3057265 3057272 chr3L 3057408 3057416 5 143 2.5 3.5 3.0 1.2 151 chr3L 3057265 exon CG32486 - chr3L 3057340 intron CG32486 - chr3L 3057416 intron CG32486 - chr3L_5_3055001 chr3L_3055001 RAL-338 440 chr3L 3259630 3259646 chr3L 3259725 3259741 7 94 2.0 3.5 2.8 1.8 111 chr3L 3259630 intron ckd + chr3L 3259686 intron ckd + chr3L 3259741 intron ckd + chr3L_7_3255001 chr3L_3255001 RAL-338 441 chr3L 3281446 3281473 chr3L 3281940 3281969 Doc 6 494 0.5 3.5 2.0 2.0 523 chr3L 3281446 intron CG12017 + chr3L 3281708 intron CG12017 + chr3L 3281969 intron CG12017 + chr3L_6_3280001 chr3L_3280001 RAL-338 442 chr3L 3284437 3284468 chr3L 3284521 3284552 7 82 1.0 4.0 2.5 2.0 115 chr3L 3284437 intron CG12017 + chr3L 3284494 intron CG12017 + chr3L 3284552 intron CG12017 + chr3L_7_3280001 chr3L_3280001 RAL-338 443 chr3L 3308470 3308493 chr3L 3308611 3308634 10 141 4.5 4.5 4.5 1.8 164 chr3L 3308470 intron ZnT63C + chr3L 3308552 intron ZnT63C + chr3L 3308634 intron ZnT63C + chr3L_10_3305001 chr3L_3305001 RAL-338 444 chr3L 3305865 3305889 chr3L 3314738 3314762 5 8873 15.5 9.5 12.5 0.4 8897 chr3L 3305865 intron ZnT63C + chr3L 3310314 intron ZnT63C + chr3L 3314762 intergenic Drsl2 +,Drsl3 + chr3L_5_3310001 chr3L_3310001 RAL-338 445 chr3L 3391459 3391482 chr3L 3391728 3391747 8 269 2.0 2.0 2.0 2.7 288 chr3L 3391459 intergenic not near genes chr3L 3391603 intergenic not near genes chr3L 3391747 intergenic not near genes chr3L_8_3390001 chr3L_3390001 RAL-338 446 chr3L 3436288 3436314 chr3L 3436367 3436392 4 78 1.0 2.0 1.5 1.6 104 chr3L 3436288 intron eIF5B - chr3L 3436340 intron eIF5B - chr3L 3436392 intron eIF5B - chr3L_4_3435001 chr3L_3435001 RAL-338 447 chr3L 3475074 3475102 chr3L 3475516 3475546 jockey 6 442 3.0 3.5 3.2 1.4 472 chr3L 3475074 intron CG42324 + chr3L 3475310 intron CG42324 + chr3L 3475546 intron CG42324 + chr3L_6_3475001 chr3L_3475001 RAL-338 448 chr3L 3483540 3483569 chr3L 3483747 3483773 5 206 0.0 1.5 0.8 2.8 233 chr3L 3483540 intron CG42324 + chr3L 3483656 intron CG42324 + chr3L 3483773 intron CG42324 + chr3L_5_3480001 chr3L_3480001 RAL-338 449 chr3L 3484293 3484310 chr3L 3484381 3484402 6 91 2.5 1.5 2.0 2.0 109 chr3L 3484293 intron,exon CG42324 +,CG43074 - chr3L 3484348 intron,exon CG42324 +,CG43074 - chr3L 3484402 intron,intron CG42324 +,CG43074 - chr3L_6_3480001 chr3L_3480001 RAL-338 450 chr3L 3601306 3601332 chr3L 3606617 3606643 copia 8 5310 2.0 0.0 1.0 4.0 5337 chr3L 3601306 intron Eip63E + chr3L 3603974 intron Eip63E + chr3L 3606643 intron Eip63E + chr3L_8_3600001 chr3L_3600001 RAL-338 451 chr3L 3815055 3815077 chr3L 3815136 3815158 5 80 2.0 1.0 1.5 2.0 103 chr3L 3815055 intron,3` UTR Scsalpha +,CR43932 - chr3L 3815106 intron,3` UTR Scsalpha +,CR43932 - chr3L 3815158 intron,intron Scsalpha +,CR43932 - chr3L_5_3815001 chr3L_3815001 RAL-338 452 chr3L 4098336 4098363 chr3L 4098412 4098420 6 73 3.0 0.0 1.5 2.4 84 chr3L 4098336 intron CG14995 - chr3L 4098378 intron CG14995 - chr3L 4098420 intron CG14995 - chr3L_6_4095001 chr3L_4095001 RAL-338 453 chr3L 4195137 4195172 chr3L 4195241 4195273 5 103 2.0 4.0 3.0 1.2 136 chr3L 4195137 exon CG43367 + chr3L 4195205 intron CG43367 + chr3L 4195273 intron CG43367 + chr3L_5_4195001 chr3L_4195001 RAL-338 454 chr3L 4519427 4519444 chr3L 4519502 4519519 9 75 1.5 0.5 1.0 4.5 92 chr3L 4519427 intron Tie - chr3L 4519473 intron Tie - chr3L 4519519 intron Tie - chr3L_9_4515001 chr3L_4515001 RAL-338 455 chr3L 4519445 4519453 chr3L 4519494 4519522 6 71 1.5 0.5 1.0 3.0 77 chr3L 4519445 intron Tie - chr3L 4519484 intron Tie - chr3L 4519522 intron Tie - chr3L_6_4515001 chr3L_4515001 RAL-338 456 chr3L 4784978 4784992 chr3L 4785187 4785200 4 209 1.5 1.0 1.2 1.8 222 chr3L 4784978 intron RhoGEF64C + chr3L 4785089 intron RhoGEF64C + chr3L 4785200 intron RhoGEF64C + chr3L_4_4785001 chr3L_4785001 RAL-338 457 chr3L 4901125 4901154 chr3L 4907315 4907344 diver 6 6190 3.0 1.5 2.2 1.9 6219 chr3L 4901125 intergenic CG13704 + chr3L 4904234 intergenic not near genes chr3L 4907344 intergenic not near genes chr3L_6_4900001 chr3L_4900001 RAL-338 458 chr3L 4908907 4908933 chr3L 4909015 4909041 4 108 0.5 4.0 2.2 1.2 134 chr3L 4908907 intergenic not near genes chr3L 4908974 intergenic not near genes chr3L 4909041 intergenic not near genes chr3L_4_4905001 chr3L_4905001 RAL-338 459 chr3L 4942741 4942758 chr3L 4942821 4942838 7 80 2.0 7.0 4.5 1.3 97 chr3L 4942741 intron Con - chr3L 4942790 intron Con - chr3L 4942838 intron Con - chr3L_7_4940001 chr3L_4940001 RAL-338 460 chr3L 4958424 4958443 chr3L 4958505 4958523 5 82 1.0 0.5 0.8 2.8 99 chr3L 4958424 intron Con - chr3L 4958474 intron Con - chr3L 4958523 intron Con - chr3L_5_4955001 chr3L_4955001 RAL-338 461 chr3L 5212243 5212268 chr3L 5212321 5212351 8 80 2.0 3.5 2.8 2.1 108 chr3L 5212243 intron shep - chr3L 5212297 intron shep - chr3L 5212351 intron shep - chr3L_8_5210001 chr3L_5210001 RAL-338 462 chr3L 5388220 5388230 chr3L 5388544 5388553 4 324 2.5 7.5 5.0 0.7 333 chr3L 5388220 intergenic not near genes chr3L 5388386 intergenic not near genes chr3L 5388553 intergenic not near genes chr3L_4_5385001 chr3L_5385001 RAL-338 463 chr3L 5561663 5561698 chr3L 5561745 5561780 4 82 0.0 2.0 1.0 2.0 117 chr3L 5561663 intergenic Sucb -,sinu - chr3L 5561722 3` UTR Sucb - chr3L 5561780 3` UTR Sucb - chr3L_4_5560001 chr3L_5560001 RAL-338 464 chr3L 5820888 5820920 chr3L 5820972 5821004 7 78 2.5 0.5 1.5 2.8 116 chr3L 5820888 intron vn - chr3L 5820946 intron vn - chr3L 5821004 intron vn - chr3L_7_5820001 chr3L_5820001 RAL-338 465 chr3L 5836151 5836174 chr3L 5836281 5836304 6 130 2.0 2.5 2.2 1.9 153 chr3L 5836151 intron vn - chr3L 5836228 intron vn - chr3L 5836304 intron vn - chr3L_6_5835001 chr3L_5835001 RAL-338 466 chr3L 5926329 5926349 chr3L 5926503 5926538 BS 5 185 1.5 4.0 2.8 1.3 209 chr3L 5926329 intron Vap-33B + chr3L 5926434 intron Vap-33B + chr3L 5926538 intron Vap-33B + chr3L_5_5925001 chr3L_5925001 RAL-338 467 chr3L 5949424 5949442 chr3L 5949515 5949533 5 91 0.0 5.0 2.5 1.4 109 chr3L 5949424 intron CG33993 - chr3L 5949478 intron CG33993 - chr3L 5949533 intron CG33993 - chr3L_5_5945001 chr3L_5945001 RAL-338 468 chr3L 6022328 6022337 chr3L 6022407 6022413 4 78 0.0 1.5 0.8 2.2 85 chr3L 6022328 intron PVRAP + chr3L 6022370 intron PVRAP + chr3L 6022413 intron PVRAP + chr3L_4_6020001 chr3L_6020001 RAL-338 469 chr3L 6052662 6052667 chr3L 6052743 6052752 4 83 5.0 8.0 6.5 0.5 90 chr3L 6052662 exon Jon65Aii + chr3L 6052707 intron Jon65Aii + chr3L 6052752 exon Jon65Aii + chr3L_4_6050001 chr3L_6050001 RAL-338 470 chr3L 6190868 6190891 chr3L 6191304 6191324 5 435 2.0 3.0 2.5 1.4 456 chr3L 6190868 exon CG7386 + chr3L 6191096 exon CG7386 + chr3L 6191324 exon CG7386 + chr3L_5_6190001 chr3L_6190001 RAL-338 471 chr3L 6220912 6220937 chr3L 6230064 6230089 roo 7 9150 4.0 4.0 4.0 1.4 9177 chr3L 6220912 5` UTR pncr008:3L + chr3L 6225500 intergenic not near genes chr3L 6230089 intergenic not near genes chr3L_7_6225001 chr3L_6225001 RAL-338 472 chr3L 6277754 6277776 chr3L 6277833 6277857 4 80 0.5 2.5 1.5 1.6 103 chr3L 6277754 intergenic not near genes chr3L 6277806 intergenic not near genes chr3L 6277857 intergenic not near genes chr3L_4_6275001 chr3L_6275001 RAL-338 473 chr3L 6405661 6405675 chr3L 6432125 6432139 roo 4 26464 2.0 1.0 1.5 1.6 26478 chr3L 6405661 intron CG42747 + chr3L 6418900 intron CG42747 + chr3L 6432139 intron CG42747 + chr3L_4_6415001 chr3L_6415001 RAL-338 474 chr3L 6443044 6443074 chr3L 6443158 6443192 7 117 4.0 0.0 2.0 2.3 148 chr3L 6443044 intron CG42747 + chr3L 6443118 intron CG42747 + chr3L 6443192 intron CG42747 + chr3L_7_6440001 chr3L_6440001 RAL-338 475 chr3L 6515037 6515057 chr3L 6515327 6515347 4 288 0.0 3.5 1.8 1.4 310 chr3L 6515037 intron sfl + chr3L 6515192 intron sfl + chr3L 6515347 intron sfl + chr3L_4_6515001 chr3L_6515001 RAL-338 476 chr3L 6632417 6632446 chr3L 6632502 6632532 5 86 1.5 2.0 1.8 1.8 115 chr3L 6632417 intron GluRIA + chr3L 6632474 intron GluRIA + chr3L 6632532 intron GluRIA + chr3L_5_6630001 chr3L_6630001 RAL-338 477 chr3L 6855920 6855952 chr3L 6860703 6860736 Doc 8 4784 1.5 1.0 1.2 3.6 4816 chr3L 6855920 intergenic not near genes chr3L 6858328 intergenic not near genes chr3L 6860736 intergenic not near genes chr3L_8_6855001 chr3L_6855001 RAL-338 478 chr3L 6974507 6974524 chr3L 6974608 6974625 5 101 0.0 7.5 3.8 1.0 118 chr3L 6974507 intron Galphai - chr3L 6974566 intron Galphai - chr3L 6974625 intron Galphai - chr3L_5_6970001 chr3L_6970001 RAL-338 479 chr3L 7090025 7090058 chr3L 7090106 7090131 4 78 0.5 0.5 0.5 2.7 106 chr3L 7090025 intergenic not near genes chr3L 7090078 intergenic not near genes chr3L 7090131 intergenic not near genes chr3L_4_7090001 chr3L_7090001 RAL-338 480 chr3L 7150875 7150902 chr3L 7150951 7150978 10 75 0.5 0.0 0.2 8.3 103 chr3L 7150875 intron corn - chr3L 7150926 intron corn - chr3L 7150978 intron corn - chr3L_10_7150001 chr3L_7150001 RAL-338 481 chr3L 7285453 7285476 chr3L 7285531 7285554 5 78 1.0 1.5 1.2 2.3 101 chr3L 7285453 intron unc-13-4A - chr3L 7285504 intron unc-13-4A - chr3L 7285554 intron unc-13-4A - chr3L_5_7285001 chr3L_7285001 RAL-338 482 chr3L 7377317 7377349 chr3L 7380422 7380454 297 5 3105 1.0 3.0 2.0 1.7 3137 chr3L 7377317 intron SMSr - chr3L 7378886 intron SMSr - chr3L 7380454 intron SMSr - chr3L_5_7375001 chr3L_7375001 RAL-338 483 chr3L 7422886 7422897 chr3L 7422972 7422982 4 85 4.5 0.0 2.2 1.2 96 chr3L 7422886 intergenic not near genes chr3L 7422934 intergenic not near genes chr3L 7422982 intergenic not near genes chr3L_4_7420001 chr3L_7420001 RAL-338 484 chr3L 7498759 7498773 chr3L 7503535 7503550 F-element 4 4777 0.5 1.0 0.8 2.2 4791 chr3L 7498759 5` UTR CG8539 - chr3L 7501154 intergenic not near genes chr3L 7503550 intergenic not near genes chr3L_4_7500001 chr3L_7500001 RAL-338 485 chr3L 7574851 7574860 chr3L 7574928 7574937 4 77 0.0 0.0 0.0 4.0 86 chr3L 7574851 intergenic not near genes chr3L 7574894 intergenic not near genes chr3L 7574937 intergenic not near genes chr3L_4_7570001 chr3L_7570001 RAL-338 486 chr3L 7576232 7576244 chr3L 7576299 7576300 4 74 1.0 3.0 2.0 1.3 68 chr3L 7576232 intergenic not near genes chr3L 7576266 intergenic not near genes chr3L 7576300 intergenic not near genes chr3L_4_7575001 chr3L_7575001 RAL-338 487 chr3L 7691843 7691851 chr3L 7691932 7691943 5 91 6.5 2.0 4.2 1.0 100 chr3L 7691843 intron,intron,intron CG32373 +,Ank2 -,CG44195 - chr3L 7691893 intron,intron,intron CG32373 +,Ank2 -,CG44195 - chr3L 7691943 intron,intron,intron CG32373 +,Ank2 -,CG44195 - chr3L_5_7690001 chr3L_7690001 RAL-338 488 chr3L 7711830 7711853 chr3L 7711904 7711911 7 73 0.5 3.5 2.0 2.3 81 chr3L 7711830 intron,intron CG32373 +,Ank2 - chr3L 7711870 intron,intron CG32373 +,Ank2 - chr3L 7711911 intron,intron CG32373 +,Ank2 - chr3L_7_7710001 chr3L_7710001 RAL-338 489 chr3L 7749470 7749471 chr3L 11777678 11777678 5 4028207 8.0 8.0 8.0 0.6 4028208 chr3L 7749470 intron,3` UTR CG32373 +,CG13685 + chr3L 9763574 5` UTR CG8177 + chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_5_9760001 chr3L_9760001 RAL-338 490 chr3L 7793717 7793742 chr3L 7800767 7800794 297 5 7051 0.0 1.0 0.5 3.3 7077 chr3L 7793717 intron CG32369 - chr3L 7797256 intron CG32369 - chr3L 7800794 intron CG32369 - chr3L_5_7795001 chr3L_7795001 RAL-338 491 chr3L 7886526 7886541 chr3L 7889043 7889059 Stalker4 4 2518 1.5 1.5 1.5 1.6 2533 chr3L 7886526 intron CG32365 + chr3L 7887792 intron CG32365 + chr3L 7889059 intron CG32365 + chr3L_4_7885001 chr3L_7885001 RAL-338 492 chr3L 8208134 8208156 chr3L 8208266 8208274 8 130 0.5 1.0 0.8 4.4 140 chr3L 8208134 intergenic not near genes chr3L 8208204 intergenic not near genes chr3L 8208274 intergenic not near genes chr3L_8_8205001 chr3L_8205001 RAL-338 493 chr3L 8243816 8243849 chr3L 8243899 8243932 4 82 1.5 1.0 1.2 1.8 116 chr3L 8243816 intron Dscam4 + chr3L 8243874 intron Dscam4 + chr3L 8243932 intron Dscam4 + chr3L_4_8240001 chr3L_8240001 RAL-338 494 chr3L 8295810 8295828 chr3L 8295964 8295986 5 156 1.0 2.0 1.5 2.0 176 chr3L 8295810 intergenic CG7201 - chr3L 8295898 intergenic not near genes chr3L 8295986 intergenic not near genes chr3L_5_8295001 chr3L_8295001 RAL-338 495 chr3L 8371734 8371756 chr3L 8371820 8371842 4 86 0.0 1.0 0.5 2.7 108 chr3L 8371734 intergenic not near genes chr3L 8371788 intergenic not near genes chr3L 8371842 intergenic not near genes chr3L_4_8370001 chr3L_8370001 RAL-338 496 chr3L 8392767 8392781 chr3L 8392854 8392866 4 86 2.5 5.0 3.8 0.8 99 chr3L 8392767 intergenic Jon66Cii -,Jon66Ci + chr3L 8392816 intergenic Jon66Cii -,Jon66Ci + chr3L 8392866 exon Jon66Cii - chr3L_4_8390001 chr3L_8390001 RAL-338 497 chr3L 8498305 8498328 chr3L 8505772 8505795 blood 5 7467 0.0 1.5 0.8 2.8 7490 chr3L 8498305 intron CG43163 - chr3L 8502050 intron CG43163 - chr3L 8505795 intron CG43163 - chr3L_5_8500001 chr3L_8500001 RAL-338 498 chr3L 8615029 8615060 chr3L 8615108 8615139 7 79 1.0 1.0 1.0 3.5 110 chr3L 8615029 exon CG6282 + chr3L 8615084 intron CG6282 + chr3L 8615139 intron CG6282 + chr3L_7_8615001 chr3L_8615001 RAL-338 499 chr3L 8671796 8671822 chr3L 8671984 8672010 6 187 4.0 2.0 3.0 1.5 214 chr3L 8671796 intergenic not near genes chr3L 8671903 intergenic not near genes chr3L 8672010 intergenic not near genes chr3L_6_8670001 chr3L_8670001 RAL-338 500 chr3L 8824576 8824600 chr3L 8824659 8824688 8 86 2.0 5.0 3.5 1.8 112 chr3L 8824576 intergenic not near genes chr3L 8824632 intergenic not near genes chr3L 8824688 intergenic not near genes chr3L_8_8820001 chr3L_8820001 RAL-338 501 chr3L 8849209 8849243 chr3L 8849289 8849323 11 79 0.5 0.5 0.5 7.3 114 chr3L 8849209 intron dally + chr3L 8849266 intron dally + chr3L 8849323 intron dally + chr3L_11_8845001 chr3L_8845001 RAL-338 502 chr3L 9013691 9013691 chr3L 18417066 18417066 4 9403375 12.5 14.5 13.5 0.3 9403375 chr3L 9013691 intron Doc2 - chr3L 13715378 intron bru-3 - chr3L 18417066 intergenic not near genes chr3L_4_13715001 chr3L_13715001 RAL-338 503 chr3L 9076933 9076958 chr3L 9084492 9084516 412 7 7559 5.0 3.0 4.0 1.4 7583 chr3L 9076933 exon Tequila + chr3L 9080724 intron Tequila + chr3L 9084516 exon Tequila + chr3L_7_9080001 chr3L_9080001 RAL-338 504 chr3L 9113535 9113545 chr3L 9113612 9113622 4 76 7.0 3.5 5.2 0.6 87 chr3L 9113535 intron bol - chr3L 9113578 intron bol - chr3L 9113622 intron bol - chr3L_4_9110001 chr3L_9110001 RAL-338 505 chr3L 9164697 9164720 chr3L 9166164 9166187 hobo 5 1467 3.0 0.5 1.8 1.8 1490 chr3L 9164697 intron Rdl - chr3L 9165442 intron Rdl - chr3L 9166187 intron Rdl - chr3L_5_9165001 chr3L_9165001 RAL-338 506 chr3L 9183349 9183368 chr3L 9183511 9183519 5 160 3.5 1.5 2.5 1.4 170 chr3L 9183349 intergenic not near genes chr3L 9183434 intergenic not near genes chr3L 9183519 intergenic not near genes chr3L_5_9180001 chr3L_9180001 RAL-338 507 chr3L 9219242 9219271 chr3L 9219914 9219941 jockey 8 671 2.0 2.0 2.0 2.7 699 chr3L 9219242 intergenic not near genes chr3L 9219592 intergenic not near genes chr3L 9219941 intergenic not near genes chr3L_8_9215001 chr3L_9215001 RAL-338 508 chr3L 9234544 9234561 chr3L 9234755 9234770 8 209 1.5 5.0 3.2 1.9 226 chr3L 9234544 intergenic not near genes chr3L 9234657 intergenic CG4483 - chr3L 9234770 intergenic CG4483 - chr3L_8_9230001 chr3L_9230001 RAL-338 509 chr3L 9270621 9270649 chr3L 9278376 9278397 roo 7 7750 2.0 3.0 2.5 2.0 7776 chr3L 9270621 intron GluRIB + chr3L 9274509 intron GluRIB + chr3L 9278397 exon GluRIB + chr3L_7_9270001 chr3L_9270001 RAL-338 510 chr3L 9318797 9318830 chr3L 9318917 9318950 4 120 1.5 2.0 1.8 1.4 153 chr3L 9318797 intergenic not near genes chr3L 9318874 intergenic not near genes chr3L 9318950 intergenic not near genes chr3L_4_9315001 chr3L_9315001 RAL-338 511 chr3L 9421529 9421553 chr3L 9421609 9421614 7 84 2.5 5.0 3.8 1.5 85 chr3L 9421529 intron CG3967 - chr3L 9421572 intron CG3967 - chr3L 9421614 intron CG3967 - chr3L_7_9420001 chr3L_9420001 RAL-338 512 chr3L 9572592 9572624 chr3L 9572837 9572867 6 244 2.0 2.0 2.0 2.0 275 chr3L 9572592 intron CG42673 + chr3L 9572730 intron CG42673 + chr3L 9572867 intron CG42673 + chr3L_6_9570001 chr3L_9570001 RAL-338 513 chr3L 9613885 9613922 chr3L 9613972 9614009 5 86 1.0 1.5 1.2 2.3 124 chr3L 9613885 3` UTR CG3280 + chr3L 9613947 intergenic CG3280 + chr3L 9614009 intergenic CG3280 + chr3L_5_9610001 chr3L_9610001 RAL-338 514 chr3L 9639048 9639060 chr3L 9639133 9639145 4 84 0.0 2.5 1.2 1.8 97 chr3L 9639048 intron fry - chr3L 9639096 intron fry - chr3L 9639145 intron fry - chr3L_4_9635001 chr3L_9635001 RAL-338 515 chr3L 9693618 9693645 chr3L 9693699 9693727 5 82 0.0 1.5 0.8 2.8 109 chr3L 9693618 intron CG6767 - chr3L 9693672 intron CG6767 - chr3L 9693727 intron CG6767 - chr3L_5_9690001 chr3L_9690001 RAL-338 516 chr3L 9895375 9895390 chr3L 9895442 9895470 6 77 2.0 2.0 2.0 2.0 95 chr3L 9895375 3` UTR CG6707 - chr3L 9895422 3` UTR CG6707 - chr3L 9895470 3` UTR CG6707 - chr3L_6_9895001 chr3L_9895001 RAL-338 517 chr3L 9915023 9915048 chr3L 9916348 9916382 6 1327 9.0 6.5 7.8 0.7 1359 chr3L 9915023 intron CG34356 + chr3L 9915702 intron CG34356 + chr3L 9916382 intron CG34356 + chr3L_6_9915001 chr3L_9915001 RAL-338 518 chr3L 9918879 9918904 chr3L 9918974 9918999 9 94 6.0 2.5 4.2 1.7 120 chr3L 9918879 intron CG34356 + chr3L 9918939 intron CG34356 + chr3L 9918999 intron CG34356 + chr3L_9_9915001 chr3L_9915001 RAL-338 519 chr3L 10130844 10130878 chr3L 10130953 10130983 7 108 2.5 2.0 2.2 2.2 139 chr3L 10130844 intron dpr6 + chr3L 10130914 intron dpr6 + chr3L 10130983 intron dpr6 + chr3L_7_10130001 chr3L_10130001 RAL-338 520 chr3L 10136975 10136991 chr3L 10137816 10137839 6 847 4.0 1.5 2.8 1.6 864 chr3L 10136975 intron dpr6 + chr3L 10137407 intron dpr6 + chr3L 10137839 intron dpr6 + chr3L_6_10135001 chr3L_10135001 RAL-338 521 chr3L 10153206 10153237 chr3L 10153289 10153320 7 81 1.5 0.0 0.8 3.9 114 chr3L 10153206 intron dpr10 - chr3L 10153263 intron dpr10 - chr3L 10153320 intron dpr10 - chr3L_7_10150001 chr3L_10150001 RAL-338 522 chr3L 10214731 10214825 chr3L 10214818 10214927 7 97 0.0 0.0 0.0 7.0 196 chr3L 10214731 intergenic not near genes chr3L 10214829 intergenic not near genes chr3L 10214927 intergenic not near genes chr3L_7_10210001 chr3L_10210001 RAL-338 523 chr3L 10308739 10308772 chr3L 10308816 10308835 11 76 2.0 1.5 1.8 3.9 96 chr3L 10308739 intergenic not near genes chr3L 10308787 intergenic not near genes chr3L 10308835 intergenic not near genes chr3L_11_10305001 chr3L_10305001 RAL-338 524 chr3L 10310358 10310376 chr3L 10310455 10310473 4 97 0.5 1.0 0.8 2.2 115 chr3L 10310358 intergenic not near genes chr3L 10310416 intergenic not near genes chr3L 10310473 intergenic not near genes chr3L_4_10310001 chr3L_10310001 RAL-338 525 chr3L 10314151 10314158 chr3L 10314237 10314241 4 84 1.5 2.5 2.0 1.3 90 chr3L 10314151 intergenic not near genes chr3L 10314196 intergenic not near genes chr3L 10314241 intergenic not near genes chr3L_4_10310001 chr3L_10310001 RAL-338 526 chr3L 10333023 10333040 chr3L 10333159 10333176 4 134 1.5 1.0 1.2 1.8 153 chr3L 10333023 intergenic not near genes chr3L 10333100 intergenic not near genes chr3L 10333176 intergenic not near genes chr3L_4_10330001 chr3L_10330001 RAL-338 527 chr3L 10414952 10414974 chr3L 10417315 10417346 Doc 4 2370 2.0 2.5 2.2 1.2 2394 chr3L 10414952 intergenic CG12362 + chr3L 10416149 intergenic not near genes chr3L 10417346 intergenic not near genes chr3L_4_10415001 chr3L_10415001 RAL-338 528 chr3L 10525116 10525151 chr3L 10525590 10525624 13 473 1.5 1.5 1.5 5.2 508 chr3L 10525116 intron A2bp1 + chr3L 10525370 intron A2bp1 + chr3L 10525624 intron A2bp1 + chr3L_13_10525001 chr3L_10525001 RAL-338 529 chr3L 10617293 10617313 chr3L 10617718 10617738 4 425 0.5 2.0 1.2 1.8 445 chr3L 10617293 intergenic not near genes chr3L 10617516 intergenic not near genes chr3L 10617738 intergenic not near genes chr3L_4_10615001 chr3L_10615001 RAL-338 530 chr3L 10683532 10683558 chr3L 10683725 10683752 6 193 2.5 3.0 2.8 1.6 220 chr3L 10683532 intron simj + chr3L 10683642 intron simj + chr3L 10683752 intron simj + chr3L_6_10680001 chr3L_10680001 RAL-338 531 chr3L 10965730 10965755 chr3L 10965854 10965879 10 118 3.5 3.0 3.2 2.4 149 chr3L 10965730 intergenic not near genes chr3L 10965804 intergenic not near genes chr3L 10965879 intergenic not near genes chr3L_10_10965001 chr3L_10965001 RAL-338 532 chr3L 11329710 11329727 chr3L 11332897 11332932 jockey 7 3195 3.5 4.0 3.8 1.5 3222 chr3L 11329710 intergenic not near genes chr3L 11331321 intergenic not near genes chr3L 11332932 intergenic not near genes chr3L_7_11330001 chr3L_11330001 RAL-338 533 chr3L 11678107 11678118 chr3L 11678194 11678205 4 87 0.0 3.0 1.5 1.6 98 chr3L 11678107 intron CG32085 - chr3L 11678156 intron CG32085 - chr3L 11678205 intron CG32085 - chr3L_4_11675001 chr3L_11675001 RAL-338 534 chr3L 12013913 12013938 chr3L 12014004 12014029 6 91 2.0 2.5 2.2 1.9 116 chr3L 12013913 intron rols - chr3L 12013971 intron rols - chr3L 12014029 intron rols - chr3L_6_12010001 chr3L_12010001 RAL-338 535 chr3L 12052703 12052731 chr3L 12052792 12052820 6 89 1.0 0.5 0.8 3.3 117 chr3L 12052703 intron rols - chr3L 12052762 intron rols - chr3L 12052820 intron rols - chr3L_6_12050001 chr3L_12050001 RAL-338 536 chr3L 12229331 12229353 chr3L 12229428 12229453 6 99 2.5 2.5 2.5 1.7 122 chr3L 12229331 intron app - chr3L 12229392 intron app - chr3L 12229453 intron app - chr3L_6_12225001 chr3L_12225001 RAL-338 537 chr3L 12231376 12231380 chr3L 12231675 12231705 10 302 16.0 21.5 18.8 0.5 329 chr3L 12231376 intron app - chr3L 12231540 intron app - chr3L 12231705 intron app - chr3L_10_12230001 chr3L_12230001 RAL-338 538 chr3L 12304090 12304116 chr3L 12304166 12304192 14 74 3.0 3.5 3.2 3.3 102 chr3L 12304090 intergenic not near genes chr3L 12304141 intergenic not near genes chr3L 12304192 intergenic not near genes chr3L_14_12300001 chr3L_12300001 RAL-338 539 chr3L 12326742 12326762 chr3L 12326818 12326838 6 75 3.0 1.0 2.0 2.0 96 chr3L 12326742 intergenic not near genes chr3L 12326790 intergenic not near genes chr3L 12326838 intergenic not near genes chr3L_6_12325001 chr3L_12325001 RAL-338 540 chr3L 12353938 12353952 chr3L 12354014 12354038 6 81 1.5 2.5 2.0 2.0 100 chr3L 12353938 intergenic not near genes chr3L 12353988 intergenic not near genes chr3L 12354038 intergenic not near genes chr3L_6_12350001 chr3L_12350001 RAL-338 541 chr3L 12381535 12381548 chr3L 12381627 12381642 5 95 0.0 0.0 0.0 5.0 107 chr3L 12381535 intron Ncc69 - chr3L 12381588 intron Ncc69 - chr3L 12381642 intron Ncc69 - chr3L_5_12380001 chr3L_12380001 RAL-338 542 chr3L 12388071 12388090 chr3L 12388155 12388174 6 84 2.0 0.5 1.2 2.7 103 chr3L 12388071 intron Ncc69 - chr3L 12388122 intron Ncc69 - chr3L 12388174 intron Ncc69 - chr3L_6_12385001 chr3L_12385001 RAL-338 543 chr3L 12460317 12460338 chr3L 12460394 12460415 4 77 0.0 1.0 0.5 2.7 98 chr3L 12460317 intergenic not near genes chr3L 12460366 intergenic not near genes chr3L 12460415 intergenic not near genes chr3L_4_12460001 chr3L_12460001 RAL-338 544 chr3L 12647622 12647640 chr3L 12647917 12647937 5 296 2.5 3.5 3.0 1.2 315 chr3L 12647622 5` UTR CR32111 + chr3L 12647780 5` UTR CR32111 + chr3L 12647937 5` UTR CR32111 + chr3L_5_12645001 chr3L_12645001 RAL-338 545 chr3L 12788423 12788436 chr3L 12788543 12788555 6 120 3.0 1.0 2.0 2.0 132 chr3L 12788423 intron Atg1 - chr3L 12788489 intron Atg1 - chr3L 12788555 exon Atg1 - chr3L_6_12785001 chr3L_12785001 RAL-338 546 chr3L 12801981 12801997 chr3L 12802056 12802073 5 75 1.5 1.0 1.2 2.3 92 chr3L 12801981 intron Atg1 - chr3L 12802027 intron Atg1 - chr3L 12802073 intron Atg1 - chr3L_5_12800001 chr3L_12800001 RAL-338 547 chr3L 12874923 12874961 chr3L 12877215 12877253 jockey 6 2292 0.0 0.0 0.0 6.0 2330 chr3L 12874923 intergenic not near genes chr3L 12876088 intergenic not near genes chr3L 12877253 intergenic not near genes chr3L_6_12875001 chr3L_12875001 RAL-338 548 chr3L 12942188 12942194 chr3L 12942279 12942295 6 98 0.5 0.5 0.5 4.0 107 chr3L 12942188 intergenic not near genes chr3L 12942242 intergenic not near genes chr3L 12942295 intergenic not near genes chr3L_6_12940001 chr3L_12940001 RAL-338 549 chr3L 12950114 12950132 chr3L 12950187 12950208 5 75 1.5 3.0 2.2 1.6 94 chr3L 12950114 intergenic not near genes chr3L 12950161 intergenic not near genes chr3L 12950208 intergenic not near genes chr3L_5_12950001 chr3L_12950001 RAL-338 550 chr3L 12957789 12957813 chr3L 12962270 12962295 copia 4 4482 1.5 4.0 2.8 1.1 4506 chr3L 12957789 intergenic not near genes chr3L 12960042 intergenic not near genes chr3L 12962295 intergenic not near genes chr3L_4_12960001 chr3L_12960001 RAL-338 551 chr3L 12977746 12977774 chr3L 12977849 12977877 6 102 0.5 1.0 0.8 3.3 131 chr3L 12977746 intergenic not near genes chr3L 12977812 intergenic not near genes chr3L 12977877 intergenic not near genes chr3L_6_12975001 chr3L_12975001 RAL-338 552 chr3L 13257264 13257283 chr3L 13257347 13257365 5 83 3.0 3.0 3.0 1.2 101 chr3L 13257264 intron caps + chr3L 13257314 intron caps + chr3L 13257365 intron caps + chr3L_5_13255001 chr3L_13255001 RAL-338 553 chr3L 13745291 13745304 chr3L 13745380 13745390 4 88 3.0 0.0 1.5 1.6 99 chr3L 13745291 intron bru-3 - chr3L 13745340 intron bru-3 - chr3L 13745390 intron bru-3 - chr3L_4_13745001 chr3L_13745001 RAL-338 554 chr3L 13774634 13774665 chr3L 13774720 13774749 6 85 3.0 0.5 1.8 2.1 115 chr3L 13774634 intron bru-3 - chr3L 13774692 intron bru-3 - chr3L 13774749 intron bru-3 - chr3L_6_13770001 chr3L_13770001 RAL-338 555 chr3L 14134809 14134832 chr3L 14134891 14134914 5 82 2.5 2.5 2.5 1.4 105 chr3L 14134809 intergenic not near genes chr3L 14134862 intergenic not near genes chr3L 14134914 intergenic not near genes chr3L_5_14130001 chr3L_14130001 RAL-338 556 chr3L 14245571 14245590 chr3L 14245665 14245684 1360 6 94 5.0 1.5 3.2 1.4 113 chr3L 14245571 3` UTR CR44561 - chr3L 14245628 3` UTR CR44561 - chr3L 14245684 3` UTR CR44561 - chr3L_6_14245001 chr3L_14245001 RAL-338 557 chr3L 14295980 14296015 chr3L 14296466 14296501 roo 5 486 1.5 0.5 1.0 2.5 521 chr3L 14295980 intron fz + chr3L 14296240 intron fz + chr3L 14296501 intron fz + chr3L_5_14295001 chr3L_14295001 RAL-338 558 chr3L 14312040 14312056 chr3L 14316851 14316869 X-element 4 4810 2.0 2.5 2.2 1.2 4829 chr3L 14312040 exon fz + chr3L 14314454 intron fz + chr3L 14316869 intron fz + chr3L_4_14310001 chr3L_14310001 RAL-338 559 chr3L 14341414 14341549 chr3L 14341548 14341641 4 134 0.0 0.0 0.0 4.0 227 chr3L 14341414 intron fz + chr3L 14341528 intron fz + chr3L 14341641 intron fz + chr3L_4_14340001 chr3L_14340001 RAL-338 560 chr3L 14356518 14356552 chr3L 14356598 14356628 7 79 4.0 3.0 3.5 1.6 110 chr3L 14356518 intron fz + chr3L 14356573 intron fz + chr3L 14356628 intron fz + chr3L_7_14355001 chr3L_14355001 RAL-338 561 chr3L 14413179 14413210 chr3L 14413272 14413303 4 93 1.0 1.0 1.0 2.0 124 chr3L 14413179 3` UTR bbg - chr3L 14413241 3` UTR bbg - chr3L 14413303 3` UTR bbg - chr3L_4_14410001 chr3L_14410001 RAL-338 562 chr3L 14444722 14444746 chr3L 14444897 14444921 4 175 3.0 2.0 2.5 1.1 199 chr3L 14444722 intron bbg - chr3L 14444822 intron bbg - chr3L 14444921 intron bbg - chr3L_4_14440001 chr3L_14440001 RAL-338 563 chr3L 14486016 14486043 chr3L 14486096 14486124 7 81 3.0 1.5 2.2 2.2 108 chr3L 14486016 intron bbg - chr3L 14486070 intron bbg - chr3L 14486124 intron bbg - chr3L_7_14485001 chr3L_14485001 RAL-338 564 chr3L 14721193 14721206 chr3L 14723035 14723047 Rt1c 6 1842 2.5 4.5 3.5 1.3 1854 chr3L 14721193 intron ome + chr3L 14722120 intron ome + chr3L 14723047 intron ome + chr3L_6_14720001 chr3L_14720001 RAL-338 565 chr3L 14815303 14815335 chr3L 14815380 14815410 6 76 0.0 1.5 0.8 3.3 107 chr3L 14815303 intron CG17839 + chr3L 14815356 intron CG17839 + chr3L 14815410 intron CG17839 + chr3L_6_14815001 chr3L_14815001 RAL-338 566 chr3L 14840375 14840389 chr3L 14840480 14840492 4 104 0.0 4.0 2.0 1.3 117 chr3L 14840375 intron CG17839 + chr3L 14840434 intron CG17839 + chr3L 14840492 intron CG17839 + chr3L_4_14840001 chr3L_14840001 RAL-338 567 chr3L 14912188 14912207 chr3L 14912270 14912288 4 82 2.5 3.0 2.8 1.1 100 chr3L 14912188 intron DCX-EMAP + chr3L 14912238 intron DCX-EMAP + chr3L 14912288 intron DCX-EMAP + chr3L_4_14910001 chr3L_14910001 RAL-338 568 chr3L 15085058 15085074 chr3L 15086224 15086240 1360 4 1166 2.5 4.5 3.5 0.9 1182 chr3L 15085058 intron cp309 - chr3L 15085649 intron cp309 - chr3L 15086240 intron cp309 - chr3L_4_15085001 chr3L_15085001 RAL-338 569 chr3L 15273341 15273360 chr3L 15273487 15273506 6 146 0.5 1.0 0.8 3.3 165 chr3L 15273341 intergenic not near genes chr3L 15273424 intergenic not near genes chr3L 15273506 intergenic not near genes chr3L_6_15270001 chr3L_15270001 RAL-338 570 chr3L 15437505 15437526 chr3L 15437583 15437603 4 78 2.0 2.5 2.2 1.2 98 chr3L 15437505 5` UTR CR43625 + chr3L 15437554 5` UTR CR43625 + chr3L 15437603 5` UTR CR43625 + chr3L_4_15435001 chr3L_15435001 RAL-338 571 chr3L 15443587 15443614 chr3L 15443662 15443690 4 75 0.0 0.0 0.0 4.0 103 chr3L 15443587 intergenic not near genes chr3L 15443638 intergenic not near genes chr3L 15443690 intergenic not near genes chr3L_4_15440001 chr3L_15440001 RAL-338 572 chr3L 15450095 15450109 chr3L 15450195 15450196 4 96 4.0 5.0 4.5 0.7 101 chr3L 15450095 intergenic not near genes chr3L 15450146 intergenic not near genes chr3L 15450196 intergenic not near genes chr3L_4_15450001 chr3L_15450001 RAL-338 573 chr3L 15643590 15643621 chr3L 15643877 15643908 5 287 1.5 0.5 1.0 2.5 318 chr3L 15643590 intron comm3 - chr3L 15643749 intron comm3 - chr3L 15643908 intron comm3 - chr3L_5_15640001 chr3L_15640001 RAL-338 574 chr3L 15832261 15832286 chr3L 15832342 15832367 5 81 1.5 3.0 2.2 1.6 106 chr3L 15832261 intergenic CG12713 +,dbo + chr3L 15832314 intergenic CG12713 +,dbo + chr3L 15832367 intergenic CG12713 +,dbo + chr3L_5_15830001 chr3L_15830001 RAL-338 575 chr3L 15880600 15880623 chr3L 15880680 15880700 5 76 2.5 2.5 2.5 1.4 100 chr3L 15880600 intron pHCl - chr3L 15880650 intron pHCl - chr3L 15880700 intron pHCl - chr3L_5_15880001 chr3L_15880001 RAL-338 576 chr3L 15883203 15883217 chr3L 15883490 15883510 5 292 2.0 3.0 2.5 1.4 307 chr3L 15883203 intron pHCl - chr3L 15883356 intron pHCl - chr3L 15883510 intron pHCl - chr3L_5_15880001 chr3L_15880001 RAL-338 577 chr3L 15894225 15894264 chr3L 15894318 15894357 8 88 2.0 3.0 2.5 2.3 132 chr3L 15894225 intron pHCl - chr3L 15894291 intron pHCl - chr3L 15894357 intron pHCl - chr3L_8_15890001 chr3L_15890001 RAL-338 578 chr3L 15919067 15919097 chr3L 15919269 15919300 7 203 2.0 0.5 1.2 3.2 233 chr3L 15919067 intron sff - chr3L 15919184 intron sff - chr3L 15919300 intron sff - chr3L_7_15915001 chr3L_15915001 RAL-338 579 chr3L 16149207 16149225 chr3L 16149296 16149297 5 85 1.0 0.5 0.8 2.8 90 chr3L 16149207 intron CG5151 - chr3L 16149252 intron CG5151 - chr3L 16149297 intron CG5151 - chr3L_5_16145001 chr3L_16145001 RAL-338 580 chr3L 16184085 16184118 chr3L 16188929 16188962 X-element 8 4842 0.0 1.5 0.8 4.4 4877 chr3L 16184085 intergenic not near genes chr3L 16186524 intergenic not near genes chr3L 16188962 intergenic not near genes chr3L_8_16185001 chr3L_16185001 RAL-338 581 chr3L 16235004 16235036 chr3L 16235093 16235125 9 88 3.0 0.0 1.5 3.6 121 chr3L 16235004 intron l(3)72Dp + chr3L 16235064 intron l(3)72Dp + chr3L 16235125 intron l(3)72Dp + chr3L_9_16235001 chr3L_16235001 RAL-338 582 chr3L 16236129 16236150 chr3L 16236211 16236232 6 80 2.5 1.5 2.0 2.0 103 chr3L 16236129 exon l(3)72Dp + chr3L 16236180 exon l(3)72Dp + chr3L 16236232 exon l(3)72Dp + chr3L_6_16235001 chr3L_16235001 RAL-338 583 chr3L 16304866 16304886 chr3L 16304944 16304964 4 77 3.0 0.5 1.8 1.4 98 chr3L 16304866 intergenic CG43249 +,CG13043 - chr3L 16304915 intergenic CG43249 +,CG13043 - chr3L 16304964 intergenic CG13043 -,CG43249 + chr3L_4_16300001 chr3L_16300001 RAL-338 584 chr3L 16360884 16360908 chr3L 16360962 16360986 9 76 3.0 3.0 3.0 2.2 102 chr3L 16360884 intron CG45057 - chr3L 16360935 intron CG45057 - chr3L 16360986 intron CG45057 - chr3L_9_16360001 chr3L_16360001 RAL-338 585 chr3L 16443857 16443877 chr3L 16446197 16446215 Doc 6 2340 1.0 3.0 2.0 2.0 2358 chr3L 16443857 intron,intron CG33158 +,dsx-c73A - chr3L 16445036 intron,intron CG33158 +,dsx-c73A - chr3L 16446215 intron,intron CG33158 +,dsx-c73A - chr3L_6_16445001 chr3L_16445001 RAL-338 586 chr3L 16493992 16494012 chr3L 16494508 16494529 jockey 5 517 1.5 3.0 2.2 1.6 537 chr3L 16493992 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494260 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494529 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_5_16490001 chr3L_16490001 RAL-338 587 chr3L 16537862 16537879 chr3L 16537949 16537966 5 86 0.0 1.5 0.8 2.8 104 chr3L 16537862 intron CG43373 - chr3L 16537914 intron CG43373 - chr3L 16537966 intron CG43373 - chr3L_5_16535001 chr3L_16535001 RAL-338 588 chr3L 16540061 16540084 chr3L 16540149 16540172 4 88 0.5 4.0 2.2 1.2 111 chr3L 16540061 intron CG43373 - chr3L 16540116 intron CG43373 - chr3L 16540172 intron CG43373 - chr3L_4_16540001 chr3L_16540001 RAL-338 589 chr3L 16800587 16800607 chr3L 16800725 16800745 4 138 1.0 1.0 1.0 2.0 158 chr3L 16800587 intron CG9674 - chr3L 16800666 intron CG9674 - chr3L 16800745 intron CG9674 - chr3L_4_16800001 chr3L_16800001 RAL-338 590 chr3L 16818748 16818776 chr3L 16818823 16818852 6 76 1.5 2.0 1.8 2.1 104 chr3L 16818748 intron,intron nudC +,CG13024 - chr3L 16818800 intron,intron nudC +,CG13024 - chr3L 16818852 intron,intron nudC +,CG13024 - chr3L_6_16815001 chr3L_16815001 RAL-338 591 chr3L 16870876 16870893 chr3L 16870960 16870984 4 89 0.5 3.0 1.8 1.4 108 chr3L 16870876 intron Lmpt + chr3L 16870930 intron Lmpt + chr3L 16870984 intron Lmpt + chr3L_4_16870001 chr3L_16870001 RAL-338 592 chr3L 16873358 16873360 chr3L 16873463 16873463 4 104 2.0 4.5 3.2 1.0 105 chr3L 16873358 intron Lmpt + chr3L 16873410 intron Lmpt + chr3L 16873463 intron Lmpt + chr3L_4_16870001 chr3L_16870001 RAL-338 593 chr3L 16945727 16945761 chr3L 16954880 16954882 roo 11 9145 2.5 2.0 2.2 3.4 9155 chr3L 16945727 exon Obp73a + chr3L 16950304 intergenic not near genes chr3L 16954882 5` UTR Nc73EF + chr3L_11_16950001 chr3L_16950001 RAL-338 594 chr3L 17304411 17304443 chr3L 17304503 17304535 5 92 1.5 1.0 1.2 2.3 124 chr3L 17304411 intergenic not near genes chr3L 17304473 intergenic not near genes chr3L 17304535 intergenic not near genes chr3L_5_17300001 chr3L_17300001 RAL-338 595 chr3L 17510736 17510764 chr3L 17510819 17510848 6 82 2.0 4.5 3.2 1.4 112 chr3L 17510736 exon Oatp74D + chr3L 17510792 intron Oatp74D + chr3L 17510848 intron Oatp74D + chr3L_6_17510001 chr3L_17510001 RAL-338 596 chr3L 17517002 17517012 chr3L 17524542 17524560 412 5 7548 2.0 4.0 3.0 1.2 7558 chr3L 17517002 intron CG7564 + chr3L 17520781 intron CG7564 + chr3L 17524560 3` UTR CG7564 + chr3L_5_17520001 chr3L_17520001 RAL-338 597 chr3L 17730851 17730874 chr3L 17738180 17738204 mdg1 4 7330 0.5 1.0 0.8 2.2 7353 chr3L 17730851 intron Ccn + chr3L 17734528 intron Ccn + chr3L 17738204 intron Ccn + chr3L_4_17730001 chr3L_17730001 RAL-338 598 chr3L 17902308 17902332 chr3L 17902386 17902402 4 76 0.5 0.0 0.2 3.3 94 chr3L 17902308 intron Prestin - chr3L 17902355 intron Prestin - chr3L 17902402 intron Prestin - chr3L_4_17900001 chr3L_17900001 RAL-338 599 chr3L 17957058 17957058 chr3L 17957148 17957148 4 90 2.5 1.5 2.0 1.3 90 chr3L 17957058 intron Eip75B - chr3L 17957103 intron Eip75B - chr3L 17957148 intron Eip75B - chr3L_4_17955001 chr3L_17955001 RAL-338 600 chr3L 17957059 17957086 chr3L 17957146 17957176 10 89 1.5 1.0 1.2 4.5 117 chr3L 17957059 intron Eip75B - chr3L 17957118 intron Eip75B - chr3L 17957176 intron Eip75B - chr3L_10_17955001 chr3L_17955001 RAL-338 601 chr3L 17968135 17968162 chr3L 17968216 17968242 5 80 3.0 0.5 1.8 1.8 107 chr3L 17968135 intron Eip75B - chr3L 17968188 intron Eip75B - chr3L 17968242 intron Eip75B - chr3L_5_17965001 chr3L_17965001 RAL-338 602 chr3L 18129171 18129190 chr3L 18129264 18129282 5 88 0.5 2.5 1.5 2.0 111 chr3L 18129171 3` UTR Cyp312a1 - chr3L 18129226 3` UTR Cyp312a1 - chr3L 18129282 3` UTR Cyp312a1 - chr3L_5_18125001 chr3L_18125001 RAL-338 603 chr3L 18171864 18171871 chr3L 18171955 18171962 6 91 3.5 0.0 1.8 2.1 98 chr3L 18171864 intron W - chr3L 18171913 intron W - chr3L 18171962 intron W - chr3L_6_18170001 chr3L_18170001 RAL-338 604 chr3L 18221100 18221132 chr3L 18221181 18221213 9 77 0.0 1.5 0.8 5.0 113 chr3L 18221100 intergenic not near genes chr3L 18221156 intergenic not near genes chr3L 18221213 intergenic not near genes chr3L_9_18220001 chr3L_18220001 RAL-338 605 chr3L 18248960 18248988 chr3L 18249058 18249085 5 98 0.0 2.5 1.2 2.3 125 chr3L 18248960 intergenic not near genes chr3L 18249022 intergenic not near genes chr3L 18249085 intergenic not near genes chr3L_5_18245001 chr3L_18245001 RAL-338 606 chr3L 18496463 18496488 chr3L 18499560 18499584 6 3096 17.5 7.0 12.2 0.5 3121 chr3L 18496463 intron AstC-R2 - chr3L 18498024 intron AstC-R2 - chr3L 18499584 intron AstC-R2 - chr3L_6_18495001 chr3L_18495001 RAL-338 607 chr3L 18567030 18567045 chr3L 18567116 18567131 4 86 2.0 4.0 3.0 1.0 101 chr3L 18567030 intron AstC-R1 + chr3L 18567080 intron AstC-R1 + chr3L 18567131 intron AstC-R1 + chr3L_4_18565001 chr3L_18565001 RAL-338 608 chr3L 18581330 18581348 chr3L 18581406 18581424 5 76 2.0 2.0 2.0 1.7 94 chr3L 18581330 intergenic not near genes chr3L 18581377 intergenic not near genes chr3L 18581424 intergenic not near genes chr3L_5_18580001 chr3L_18580001 RAL-338 609 chr3L 18607850 18607867 chr3L 18607972 18607989 6 122 1.5 1.0 1.2 2.7 139 chr3L 18607850 intron,intron,exon CG13380 -,CG4174 -,CG18231 + chr3L 18607920 intron,intron,intron CG13380 -,CG4174 -,CG18231 + chr3L 18607989 intron,intron,intron CG13380 -,CG4174 -,CG18231 + chr3L_6_18605001 chr3L_18605001 RAL-338 610 chr3L 18701141 18701155 chr3L 18701229 18701243 4 88 1.0 1.5 1.2 1.8 102 chr3L 18701141 intergenic not near genes chr3L 18701192 intergenic not near genes chr3L 18701243 intergenic not near genes chr3L_4_18700001 chr3L_18700001 RAL-338 611 chr3L 18721786 18721806 chr3L 18721875 18721897 6 90 3.0 2.5 2.8 1.6 111 chr3L 18721786 intergenic CG12477 - chr3L 18721842 intergenic CG12477 - chr3L 18721897 3` UTR CG12477 - chr3L_6_18720001 chr3L_18720001 RAL-338 612 chr3L 18729918 18729947 chr3L 18729995 18730007 5 72 0.5 0.5 0.5 3.3 89 chr3L 18729918 intergenic not near genes chr3L 18729962 intergenic not near genes chr3L 18730007 intergenic not near genes chr3L_5_18725001 chr3L_18725001 RAL-338 613 chr3L 18772418 18772437 chr3L 18781099 18781109 roo 4 8679 1.0 1.5 1.2 1.8 8691 chr3L 18772418 intron ftz-f1 - chr3L 18776764 intron ftz-f1 - chr3L 18781109 intron ftz-f1 - chr3L_4_18775001 chr3L_18775001 RAL-338 614 chr3L 18833782 18833800 chr3L 18834946 18834964 1360 4 1164 2.0 1.5 1.8 1.4 1182 chr3L 18833782 intron Indy - chr3L 18834373 intron Indy - chr3L 18834964 intron Indy - chr3L_4_18830001 chr3L_18830001 RAL-338 615 chr3L 18929960 18929982 chr3L 18930041 18930066 7 82 1.0 1.5 1.2 3.2 106 chr3L 18929960 intron CG32204 - chr3L 18930013 intron CG32204 - chr3L 18930066 exon CG32204 - chr3L_7_18930001 chr3L_18930001 RAL-338 616 chr3L 18933625 18933645 chr3L 18933719 18933734 5 93 0.0 0.5 0.2 4.2 109 chr3L 18933625 intron CG32204 - chr3L 18933680 intron CG32204 - chr3L 18933734 intron CG32204 - chr3L_5_18930001 chr3L_18930001 RAL-338 617 chr3L 18957299 18957328 chr3L 18957380 18957409 8 81 2.0 3.5 2.8 2.1 110 chr3L 18957299 intergenic not near genes chr3L 18957354 intergenic not near genes chr3L 18957409 intergenic not near genes chr3L_8_18955001 chr3L_18955001 RAL-338 618 chr3L 18969560 18969575 chr3L 18969636 18969651 6 76 1.0 1.5 1.2 2.7 91 chr3L 18969560 intergenic not near genes chr3L 18969606 intergenic not near genes chr3L 18969651 intergenic not near genes chr3L_6_18965001 chr3L_18965001 RAL-338 619 chr3L 19090737 19090765 chr3L 19090817 19090844 7 79 2.0 5.5 3.8 1.5 107 chr3L 19090737 5` UTR CR45386 + chr3L 19090790 5` UTR CR45386 + chr3L 19090844 5` UTR CR45386 + chr3L_7_19090001 chr3L_19090001 RAL-338 620 chr3L 19115642 19115668 chr3L 19115822 19115848 BS 9 180 4.0 4.5 4.2 1.7 206 chr3L 19115642 intron CG14082 - chr3L 19115745 intron CG14082 - chr3L 19115848 intron CG14082 - chr3L_9_19115001 chr3L_19115001 RAL-338 621 chr3L 19117045 19117074 chr3L 19124492 19124509 mdg1 6 7444 2.5 2.5 2.5 1.7 7464 chr3L 19117045 intron CG14082 - chr3L 19120777 intron CG14082 - chr3L 19124509 intron CG14082 - chr3L_6_19120001 chr3L_19120001 RAL-338 622 chr3L 19186948 19186968 chr3L 19187044 19187054 4 89 0.5 1.5 1.0 2.0 106 chr3L 19186948 intron fz2 - chr3L 19187001 intron fz2 - chr3L 19187054 intron fz2 - chr3L_4_19185001 chr3L_19185001 RAL-338 623 chr3L 19208058 19208092 chr3L 19209432 19209461 Doc 5 1371 1.5 3.0 2.2 1.6 1403 chr3L 19208058 intron fz2 - chr3L 19208760 intron fz2 - chr3L 19209461 intron fz2 - chr3L_5_19205001 chr3L_19205001 RAL-338 624 chr3L 19263245 19263263 chr3L 19263405 19263423 6 160 2.0 2.0 2.0 2.0 178 chr3L 19263245 intron Max - chr3L 19263334 intron Max - chr3L 19263423 exon Max - chr3L_6_19260001 chr3L_19260001 RAL-338 625 chr3L 19274185 19274212 chr3L 19274264 19274290 11 78 1.5 1.5 1.5 4.4 105 chr3L 19274185 intergenic CG14085 + chr3L 19274238 intergenic CG14085 + chr3L 19274290 intergenic CG14085 + chr3L_11_19270001 chr3L_19270001 RAL-338 626 chr3L 19335746 19335767 chr3L 19335833 19335854 4 87 1.0 0.5 0.8 2.2 108 chr3L 19335746 intron pip - chr3L 19335800 intron pip - chr3L 19335854 intron pip - chr3L_4_19335001 chr3L_19335001 RAL-338 627 chr3L 19417801 19417831 chr3L 19417881 19417911 7 77 2.5 2.5 2.5 2.0 110 chr3L 19417801 intergenic not near genes chr3L 19417856 intergenic not near genes chr3L 19417911 intergenic not near genes chr3L_7_19415001 chr3L_19415001 RAL-338 628 chr3L 19488476 19488488 chr3L 19488558 19488570 5 82 4.0 1.5 2.8 1.3 94 chr3L 19488476 intergenic pncr009:3L -,CG32212 + chr3L 19488523 intergenic pncr009:3L -,CG32212 + chr3L 19488570 intergenic pncr009:3L -,CG32212 + chr3L_5_19485001 chr3L_19485001 RAL-338 629 chr3L 19848512 19848534 chr3L 19857702 19857724 roo 8 9190 1.5 1.5 1.5 3.2 9212 chr3L 19848512 intron Papss + chr3L 19853118 intron Papss + chr3L 19857724 intron Papss + chr3L_8_19850001 chr3L_19850001 RAL-338 630 chr3L 19932479 19932488 chr3L 19932556 19932561 4 76 2.5 2.0 2.2 1.2 82 chr3L 19932479 3` UTR RhoGDI + chr3L 19932520 3` UTR RhoGDI + chr3L 19932561 3` UTR RhoGDI + chr3L_4_19930001 chr3L_19930001 RAL-338 631 chr3L 20057560 20057581 chr3L 20057673 20057694 9 110 2.5 1.5 2.0 3.0 134 chr3L 20057560 intergenic not near genes chr3L 20057627 intergenic not near genes chr3L 20057694 intergenic not near genes chr3L_9_20055001 chr3L_20055001 RAL-338 632 chr3L 20143090 20143114 chr3L 20143169 20143194 8 80 1.0 3.0 2.0 2.7 104 chr3L 20143090 intergenic not near genes chr3L 20143142 intergenic not near genes chr3L 20143194 intergenic not near genes chr3L_8_20140001 chr3L_20140001 RAL-338 633 chr3L 20257343 20257349 chr3L 20258463 20258469 pogo 4 1120 2.5 2.5 2.5 1.1 1126 chr3L 20257343 intron rdgC + chr3L 20257906 intron rdgC + chr3L 20258469 intron rdgC + chr3L_4_20255001 chr3L_20255001 RAL-338 634 chr3L 20476752 20476779 chr3L 20484351 20484377 springer 7 7599 0.0 1.0 0.5 4.7 7625 chr3L 20476752 3` UTR isoQC + chr3L 20480564 intergenic not near genes chr3L 20484377 3` UTR ZnT77C - chr3L_7_20480001 chr3L_20480001 RAL-338 635 chr3L 20680950 20680955 chr3L 20681241 20681251 4 294 2.0 4.0 3.0 1.0 301 chr3L 20680950 intergenic not near genes chr3L 20681100 intergenic not near genes chr3L 20681251 intergenic not near genes chr3L_4_20680001 chr3L_20680001 RAL-338 636 chr3L 20710757 20710792 chr3L 20710834 20710868 9 77 2.0 1.5 1.8 3.2 111 chr3L 20710757 intergenic not near genes chr3L 20710812 intergenic not near genes chr3L 20710868 intergenic not near genes chr3L_9_20710001 chr3L_20710001 RAL-338 637 chr3L 20831474 20831486 chr3L 20831595 20831607 4 121 4.5 5.0 4.8 0.7 133 chr3L 20831474 intron Pka-R1 + chr3L 20831540 intron Pka-R1 + chr3L 20831607 intron Pka-R1 + chr3L_4_20830001 chr3L_20830001 RAL-338 638 chr3L 20849276 20849291 chr3L 20849355 20849370 6 79 3.0 0.5 1.8 2.1 94 chr3L 20849276 intron CG32432 - chr3L 20849323 intron CG32432 - chr3L 20849370 intron CG32432 - chr3L_6_20845001 chr3L_20845001 RAL-338 639 chr3L 20902691 20902726 chr3L 20902773 20902793 5 77 1.5 1.5 1.5 2.0 102 chr3L 20902691 intergenic CR45383 + chr3L 20902742 intergenic CR45383 + chr3L 20902793 intergenic CR45383 + chr3L_5_20900001 chr3L_20900001 RAL-338 640 chr3L 20964615 20964643 chr3L 20964692 20964719 4 77 4.0 1.5 2.8 1.1 104 chr3L 20964615 3` UTR CG12983 - chr3L 20964667 3` UTR CG12983 - chr3L 20964719 3` UTR CG12983 - chr3L_4_20960001 chr3L_20960001 RAL-338 641 chr3L 21014914 21014948 chr3L 21023395 21023428 Tirant 6 8476 0.5 2.0 1.2 2.7 8514 chr3L 21014914 intron skd - chr3L 21019171 intron skd - chr3L 21023428 intron skd - chr3L_6_21015001 chr3L_21015001 RAL-338 642 chr3L 21158595 21158622 chr3L 21158671 21158688 5 73 1.0 2.5 1.8 1.8 93 chr3L 21158595 intron Ac78C - chr3L 21158642 intron Ac78C - chr3L 21158688 intron Ac78C - chr3L_5_21155001 chr3L_21155001 RAL-338 643 chr3L 21243750 21243767 chr3L 21251313 21251329 412 4 7562 2.5 1.0 1.8 1.4 7579 chr3L 21243750 intron Eip78C + chr3L 21247540 intron Eip78C + chr3L 21251329 intron Eip78C + chr3L_4_21245001 chr3L_21245001 RAL-338 644 chr3L 21256534 21256562 chr3L 21256627 21256656 8 91 1.5 2.0 1.8 2.9 122 chr3L 21256534 intron Eip78C + chr3L 21256595 intron Eip78C + chr3L 21256656 intron Eip78C + chr3L_8_21255001 chr3L_21255001 RAL-338 645 chr3L 21656996 21657026 chr3L 21657088 21657119 9 92 1.0 1.5 1.2 4.1 123 chr3L 21656996 intron CG43980 + chr3L 21657058 intron CG43980 + chr3L 21657119 intron CG43980 + chr3L_9_21655001 chr3L_21655001 RAL-338 646 chr3L 21749316 21749340 chr3L 21754476 21754500 Doc 6 5160 2.5 2.5 2.5 1.7 5184 chr3L 21749316 intron Syn1 - chr3L 21751908 intron Syn1 - chr3L 21754500 intron Syn1 - chr3L_6_21750001 chr3L_21750001 RAL-338 647 chr3L 21849502 21849529 chr3L 21849584 21849611 6 81 2.0 1.5 1.8 2.1 109 chr3L 21849502 intron mub + chr3L 21849556 intron mub + chr3L 21849611 intron mub + chr3L_6_21845001 chr3L_21845001 RAL-338 648 chr3L 21905487 21905511 chr3L 21905589 21905613 4 102 3.5 2.0 2.8 1.1 126 chr3L 21905487 intron mub + chr3L 21905550 intron mub + chr3L 21905613 intron mub + chr3L_4_21905001 chr3L_21905001 RAL-338 649 chr3L 21966476 21966503 chr3L 21966558 21966585 4 82 2.0 4.0 3.0 1.0 109 chr3L 21966476 intron CS-2 + chr3L 21966530 intron CS-2 + chr3L 21966585 intron CS-2 + chr3L_4_21965001 chr3L_21965001 RAL-338 650 chr3L 21972570 21972595 chr3L 21972728 21972737 9 156 1.0 3.0 2.0 3.0 167 chr3L 21972570 intron CG7470 + chr3L 21972654 intron CG7470 + chr3L 21972737 intron CG7470 + chr3L_9_21970001 chr3L_21970001 RAL-338 651 chr3L 22008868 22008874 chr3L 22008927 22008951 4 67 2.5 4.5 3.5 0.9 83 chr3L 22008868 intergenic not near genes chr3L 22008910 intergenic not near genes chr3L 22008951 intergenic not near genes chr3L_4_22005001 chr3L_22005001 RAL-338 652 chr3L 22169459 22169488 chr3L 22169552 22169581 11 93 1.5 1.0 1.2 5.0 122 chr3L 22169459 intron olf413 + chr3L 22169520 intron olf413 + chr3L 22169581 intron olf413 + chr3L_11_22165001 chr3L_22165001 RAL-338 653 chr3L 22271136 22271157 chr3L 22271257 22271284 5 126 3.0 0.5 1.8 1.8 148 chr3L 22271136 intron Csp + chr3L 22271210 intron Csp + chr3L 22271284 intron Csp + chr3L_5_22270001 chr3L_22270001 RAL-338 654 chr3L 22275646 22275671 chr3L 22275841 22275866 4 194 0.5 1.0 0.8 2.2 220 chr3L 22275646 intron srpk79D + chr3L 22275756 intron srpk79D + chr3L 22275866 intron srpk79D + chr3L_4_22275001 chr3L_22275001 RAL-338 655 chr3L 22328076 22328092 chr3L 22328159 22328189 7 95 3.0 5.5 4.2 1.3 113 chr3L 22328076 intron Ten-m - chr3L 22328132 intron Ten-m - chr3L 22328189 intron Ten-m - chr3L_7_22325001 chr3L_22325001 RAL-338 656 chr3L 22514770 22514800 chr3L 22514937 22514965 5 166 1.5 3.0 2.2 1.6 195 chr3L 22514770 intergenic not near genes chr3L 22514868 intergenic not near genes chr3L 22514965 intergenic not near genes chr3L_5_22510001 chr3L_22510001 RAL-338 657 chr3L 22617190 22617217 chr3L 22624640 22624649 blood 5 7448 0.5 1.0 0.8 2.8 7459 chr3L 22617190 intron CG14459 - chr3L 22620920 intron CG14459 - chr3L 22624649 intron CG14459 - chr3L_5_22620001 chr3L_22620001 RAL-338 658 chr3L 22786074 22786098 chr3L 22788514 22788535 6 2438 9.0 11.0 10.0 0.5 2461 chr3L 22786074 3` UTR SPoCk + chr3L 22787304 3` UTR SPoCk + chr3L 22788535 exon CG14448 + chr3L_6_22785001 chr3L_22785001 RAL-338 659 chr3L 22853464 22853714 chr3L 22853551 22853786 14 83 1.0 1.0 1.0 7.0 322 chr3L 22853464 5` UTR,5` UTR CR43426 +,CG32462 - chr3L 22853625 5` UTR CR43426 + chr3L 22853786 5` UTR CR43426 + chr3L_14_22850001 chr3L_22850001 RAL-338 660 chr3L 22865980 22866012 chr3L 22867113 22867140 Doc 8 1132 2.0 0.5 1.2 3.6 1160 chr3L 22865980 intron CG33170 + chr3L 22866560 intron CG33170 + chr3L 22867140 intron CG33170 + chr3L_8_22865001 chr3L_22865001 RAL-338 661 chr3L 22985299 22985334 chr3L 22985382 22985417 5 83 2.0 0.5 1.2 2.3 118 chr3L 22985299 intergenic not near genes chr3L 22985358 intergenic not near genes chr3L 22985417 intergenic not near genes chr3L_5_22985001 chr3L_22985001 RAL-338 662 chr3L 22989868 22989891 chr3L 22996836 22996864 297 5 6972 1.0 1.0 1.0 2.5 6996 chr3L 22989868 intergenic not near genes chr3L 22993366 intergenic not near genes chr3L 22996864 intergenic not near genes chr3L_5_22990001 chr3L_22990001 RAL-338 663 chr3L 23875526 23875548 chr3L 23875606 23875629 6 80 1.5 3.5 2.5 1.7 103 chr3L 23875526 intron CG40470 - chr3L 23875578 intron CG40470 - chr3L 23875629 intron CG40470 - chr3L_6_23875001 chr3L_23875001 RAL-338 664 chr3L 25331635 25331652 chr3L 25331726 25331742 4 88 3.5 3.0 3.2 1.0 107 chr3L 25331635 intergenic not near genes chr3L 25331688 intergenic not near genes chr3L 25331742 intergenic not near genes chr3L_4_25330001 chr3L_25330001 RAL-338 665 chr3L 25492937 25492949 chr3L 25493238 25493262 4 312 1.0 2.0 1.5 1.6 325 chr3L 25492937 intron CG41343 - chr3L 25493100 intron CG41343 - chr3L 25493262 intron CG41343 - chr3L_4_25490001 chr3L_25490001 RAL-338 666 chr3L 25627824 25627829 chr3L 25627904 25627915 4 84 2.0 3.5 2.8 1.1 91 chr3L 25627824 intron CG41343 - chr3L 25627870 intron CG41343 - chr3L 25627915 intron CG41343 - chr3L_4_25625001 chr3L_25625001 RAL-338 667 chr3L 27413564 27413584 chr3L 27413680 27413700 7 114 5.5 2.5 4.0 1.4 136 chr3L 27413564 intron Dbp80 + chr3L 27413632 intron Dbp80 + chr3L 27413700 intron Dbp80 + chr3L_7_27410001 chr3L_27410001 RAL-338 668 chr3R 4214812 4214820 chr3R 4215069 4215079 4 258 4.5 4.0 4.2 0.8 267 chr3R 4214812 intron,intron CG14636 -,aux + chr3R 4214946 intron,intron CG14636 -,aux + chr3R 4215079 intron,intron CG14636 -,aux + chr3R_4_4210001 chr3R_4210001 RAL-338 669 chr3R 4599318 4599333 chr3R 4599402 4599416 4 84 1.5 2.0 1.8 1.4 98 chr3R 4599318 intron CR44317 - chr3R 4599367 intron CR44317 - chr3R 4599416 intron CR44317 - chr3R_4_4595001 chr3R_4595001 RAL-338 670 chr3R 4769166 4769191 chr3R 4769243 4769268 7 74 2.0 2.0 2.0 2.3 102 chr3R 4769166 intron,intron atms +,CG44098 - chr3R 4769217 intron,intron atms +,CG44098 - chr3R 4769268 intron,intron atms +,CG44098 - chr3R_7_4765001 chr3R_4765001 RAL-338 671 chr3R 4861572 4861597 chr3R 4861653 4861675 7 75 5.0 6.0 5.5 1.1 103 chr3R 4861572 intron opa + chr3R 4861624 intron opa + chr3R 4861675 intron opa + chr3R_7_4860001 chr3R_4860001 RAL-338 672 chr3R 4887482 4887510 chr3R 4894859 4894887 rover 8 7376 2.5 2.5 2.5 2.3 7405 chr3R 4887482 intergenic not near genes chr3R 4891184 intergenic not near genes chr3R 4894887 intergenic not near genes chr3R_8_4890001 chr3R_4890001 RAL-338 673 chr3R 5067983 5068005 chr3R 5073500 5073522 mdg3 6 5516 3.0 1.0 2.0 2.0 5539 chr3R 5067983 intergenic not near genes chr3R 5070752 intergenic not near genes chr3R 5073522 intergenic not near genes chr3R_6_5070001 chr3R_5070001 RAL-338 674 chr3R 5158156 5158175 chr3R 5158238 5158268 4 90 0.5 4.0 2.2 1.2 112 chr3R 5158156 intron dpr16 + chr3R 5158212 intron dpr16 + chr3R 5158268 intron dpr16 + chr3R_4_5155001 chr3R_5155001 RAL-338 675 chr3R 5162940 5162970 chr3R 5163092 5163122 5 152 0.0 0.5 0.2 4.2 182 chr3R 5162940 intron dpr16 + chr3R 5163031 intron dpr16 + chr3R 5163122 intron dpr16 + chr3R_5_5160001 chr3R_5160001 RAL-338 676 chr3R 5351918 5351933 chr3R 5352915 5352929 10 997 17.5 16.5 17.0 0.6 1011 chr3R 5351918 intergenic not near genes chr3R 5352424 intergenic not near genes chr3R 5352929 intergenic not near genes chr3R_10_5350001 chr3R_5350001 RAL-338 677 chr3R 5445971 5445991 chr3R 5452429 5452451 Burdock 5 6459 0.0 2.0 1.0 2.5 6480 chr3R 5445971 intron CG14669 + chr3R 5449211 intron CG14669 + chr3R 5452451 intron CG14669 + chr3R_5_5445001 chr3R_5445001 RAL-338 678 chr3R 5746017 5746039 chr3R 5746258 5746272 pogo 4 239 2.5 2.5 2.5 1.1 255 chr3R 5746017 3` UTR Madm + chr3R 5746144 3` UTR Madm + chr3R 5746272 3` UTR Madm + chr3R_4_5745001 chr3R_5745001 RAL-338 679 chr3R 5772376 5772403 chr3R 5772534 5772560 6 158 0.5 1.5 1.0 3.0 184 chr3R 5772376 intron CG2082 - chr3R 5772468 intron CG2082 - chr3R 5772560 intron CG2082 - chr3R_6_5770001 chr3R_5770001 RAL-338 680 chr3R 5809117 5809145 chr3R 5809358 5809386 pogo 4 240 2.0 1.0 1.5 1.6 269 chr3R 5809117 3` UTR CG11000 + chr3R 5809252 3` UTR CG11000 + chr3R 5809386 3` UTR CG11000 + chr3R_4_5805001 chr3R_5805001 RAL-338 681 chr3R 5822386 5822412 chr3R 5823544 5823579 1360 5 1165 2.5 1.0 1.8 1.8 1193 chr3R 5822386 3` UTR CG2023 - chr3R 5822982 3` UTR CG2023 - chr3R 5823579 3` UTR CG2023 - chr3R_5_5820001 chr3R_5820001 RAL-338 682 chr3R 5927568 5927589 chr3R 5927805 5927829 pogo 5 239 3.0 0.5 1.8 1.8 261 chr3R 5927568 intron CG34113 - chr3R 5927698 intron CG34113 - chr3R 5927829 intron CG34113 - chr3R_5_5925001 chr3R_5925001 RAL-338 683 chr3R 5988896 5988922 chr3R 5989098 5989123 6 200 2.5 0.5 1.5 2.4 227 chr3R 5988896 intergenic CR44927 + chr3R 5989010 intergenic CR44927 + chr3R 5989123 intergenic CR44927 + chr3R_6_5985001 chr3R_5985001 RAL-338 684 chr3R 6015964 6015994 chr3R 6024442 6024475 Tirant 6 8480 2.0 2.0 2.0 2.0 8511 chr3R 6015964 intergenic not near genes chr3R 6020220 intergenic not near genes chr3R 6024475 intergenic not near genes chr3R_6_6020001 chr3R_6020001 RAL-338 685 chr3R 6048755 6048787 chr3R 6048859 6048891 6 104 5.0 2.0 3.5 1.3 136 chr3R 6048755 intergenic not near genes chr3R 6048823 intergenic not near genes chr3R 6048891 intergenic not near genes chr3R_6_6045001 chr3R_6045001 RAL-338 686 chr3R 6062151 6062174 chr3R 6062268 6062291 5 117 2.0 1.5 1.8 1.8 140 chr3R 6062151 intergenic not near genes chr3R 6062221 intergenic not near genes chr3R 6062291 intergenic not near genes chr3R_5_6060001 chr3R_6060001 RAL-338 687 chr3R 6158521 6158541 chr3R 6167090 6167124 Tirant 4 8574 2.5 1.5 2.0 1.3 8603 chr3R 6158521 intergenic not near genes chr3R 6162822 intergenic not near genes chr3R 6167124 intergenic CG1077 + chr3R_4_6160001 chr3R_6160001 RAL-338 688 chr3R 6421108 6421125 chr3R 6421272 6421289 5 161 5.0 4.0 4.5 0.9 181 chr3R 6421108 intron gpp + chr3R 6421198 intron gpp + chr3R 6421289 intron gpp + chr3R_5_6420001 chr3R_6420001 RAL-338 689 chr3R 6507504 6507539 chr3R 6507592 6507626 5 86 1.5 3.0 2.2 1.6 122 chr3R 6507504 intergenic not near genes chr3R 6507565 intergenic not near genes chr3R 6507626 intergenic not near genes chr3R_5_6505001 chr3R_6505001 RAL-338 690 chr3R 6571652 6571676 chr3R 6571836 6571860 8 184 3.5 0.5 2.0 2.7 208 chr3R 6571652 intron dpr11 - chr3R 6571756 intron dpr11 - chr3R 6571860 intron dpr11 - chr3R_8_6570001 chr3R_6570001 RAL-338 691 chr3R 6737502 6737527 chr3R 6739289 6739314 Doc 6 1786 2.5 2.0 2.2 1.9 1812 chr3R 6737502 intron pb - chr3R 6738408 intron pb - chr3R 6739314 intron pb - chr3R_6_6735001 chr3R_6735001 RAL-338 692 chr3R 7092782 7092815 chr3R 7093345 7093379 10 562 0.5 4.5 2.5 2.9 597 chr3R 7092782 3` UTR CR43685 - chr3R 7093080 intron CR43685 - chr3R 7093379 3` UTR CR43685 - chr3R_10_7090001 chr3R_7090001 RAL-338 693 chr3R 7105324 7105349 chr3R 7105407 7105432 5 83 1.0 3.5 2.2 1.6 108 chr3R 7105324 intron Alh - chr3R 7105378 intron Alh - chr3R 7105432 intron Alh - chr3R_5_7105001 chr3R_7105001 RAL-338 694 chr3R 7766628 7766661 chr3R 7766906 7766937 6 277 3.0 2.0 2.5 1.7 309 chr3R 7766628 intergenic not near genes chr3R 7766782 intergenic not near genes chr3R 7766937 intergenic not near genes chr3R_6_7765001 chr3R_7765001 RAL-338 695 chr3R 8101762 8101792 chr3R 8104846 8104875 G2 7 3083 1.5 0.0 0.8 3.9 3113 chr3R 8101762 exon CG7900 + chr3R 8103318 intron CG7900 + chr3R 8104875 3` UTR CG7900 + chr3R_7_8100001 chr3R_8100001 RAL-338 696 chr3R 8182667 8182683 chr3R 8182753 8182777 5 92 2.5 3.5 3.0 1.2 110 chr3R 8182667 intergenic not near genes chr3R 8182722 intergenic not near genes chr3R 8182777 intergenic not near genes chr3R_5_8180001 chr3R_8180001 RAL-338 697 chr3R 8303193 8303205 chr3R 8305428 8305440 6 2236 17.5 17.5 17.5 0.3 2247 chr3R 8303193 exon nac - chr3R 8304316 3` UTR Sgt1 - chr3R 8305440 intergenic Sgt1 - chr3R_6_8300001 chr3R_8300001 RAL-338 698 chr3R 8326565 8326572 chr3R 8326636 8326643 4 82 3.5 3.5 3.5 0.9 78 chr3R 8326565 intron Poxm - chr3R 8326604 intron Poxm - chr3R 8326643 intron Poxm - chr3R_4_8325001 chr3R_8325001 RAL-338 699 chr3R 8339246 8339247 chr3R 21907534 21907536 13 13568288 6.5 13.0 9.8 1.2 13568290 chr3R 8339246 intergenic not near genes chr3R 15123391 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_13_15120001 chr3R_15120001 RAL-338 700 chr3R 8403018 8403038 chr3R 8412183 8412204 roo 4 9163 5.0 4.5 4.8 0.7 9186 chr3R 8403018 intron CG45263 - chr3R 8407611 intron CG45263 - chr3R 8412204 intron CG45263 - chr3R_4_8405001 chr3R_8405001 RAL-338 701 chr3R 8455623 8455650 chr3R 8455703 8455730 7 77 4.5 3.0 3.8 1.5 107 chr3R 8455623 intron CG45263 - chr3R 8455676 intron CG45263 - chr3R 8455730 intron CG45263 - chr3R_7_8455001 chr3R_8455001 RAL-338 702 chr3R 8537822 8537855 chr3R 8537904 8537938 11 82 4.0 2.5 3.2 2.6 116 chr3R 8537822 intergenic not near genes chr3R 8537880 intergenic not near genes chr3R 8537938 intergenic not near genes chr3R_11_8535001 chr3R_8535001 RAL-338 703 chr3R 8570480 8570511 chr3R 8575115 8575147 HMS-Beagle 7 4635 1.5 2.0 1.8 2.5 4667 chr3R 8570480 intergenic not near genes chr3R 8572814 intergenic not near genes chr3R 8575147 intergenic not near genes chr3R_7_8570001 chr3R_8570001 RAL-338 704 chr3R 8601770 8601782 chr3R 8610923 8610934 roo 4 9152 5.5 4.5 5.0 0.7 9164 chr3R 8601770 intron 5-HT2B + chr3R 8606352 intron 5-HT2B + chr3R 8610934 intron 5-HT2B + chr3R_4_8605001 chr3R_8605001 RAL-338 705 chr3R 8601790 8601798 chr3R 8610922 8610947 roo 4 9136 3.5 4.0 3.8 0.8 9157 chr3R 8601790 intron 5-HT2B + chr3R 8606368 intron 5-HT2B + chr3R 8610947 intron 5-HT2B + chr3R_4_8605001 chr3R_8605001 RAL-338 706 chr3R 8614793 8614818 chr3R 8614995 8615019 5 202 0.0 4.5 2.2 1.6 226 chr3R 8614793 intron 5-HT2B + chr3R 8614906 intron 5-HT2B + chr3R 8615019 intron 5-HT2B + chr3R_5_8610001 chr3R_8610001 RAL-338 707 chr3R 8621542 8621563 chr3R 8621619 8621631 7 75 4.0 3.0 3.5 1.6 89 chr3R 8621542 intron 5-HT2B + chr3R 8621586 intron 5-HT2B + chr3R 8621631 intron 5-HT2B + chr3R_7_8620001 chr3R_8620001 RAL-338 708 chr3R 8707363 8707384 chr3R 8709799 8709825 jockey 6 2440 3.0 3.0 3.0 1.5 2462 chr3R 8707363 intergenic not near genes chr3R 8708594 intergenic not near genes chr3R 8709825 intergenic not near genes chr3R_6_8705001 chr3R_8705001 RAL-338 709 chr3R 8798653 8798685 chr3R 8798736 8798766 7 83 1.0 2.0 1.5 2.8 113 chr3R 8798653 intron,intron Pif1A -,Pif1B - chr3R 8798710 intron,intron Pif1A -,Pif1B - chr3R 8798766 intron,intron Pif1A -,Pif1B - chr3R_7_8795001 chr3R_8795001 RAL-338 710 chr3R 9087319 9087351 chr3R 9087398 9087430 6 79 1.0 0.5 0.8 3.3 111 chr3R 9087319 intron pum - chr3R 9087374 intron pum - chr3R 9087430 intron pum - chr3R_6_9085001 chr3R_9085001 RAL-338 711 chr3R 9141172 9141178 chr3R 9141261 9141267 4 89 2.0 3.0 2.5 1.1 95 chr3R 9141172 intron pum - chr3R 9141220 intron pum - chr3R 9141267 intron pum - chr3R_4_9140001 chr3R_9140001 RAL-338 712 chr3R 9278780 9278808 chr3R 9284040 9284068 Rt1a 5 5259 1.0 3.5 2.2 1.6 5288 chr3R 9278780 intergenic not near genes chr3R 9281424 intergenic not near genes chr3R 9284068 intergenic not near genes chr3R_5_9280001 chr3R_9280001 RAL-338 713 chr3R 9284881 9284910 chr3R 9284964 9284994 7 84 0.0 2.0 1.0 3.5 113 chr3R 9284881 intergenic not near genes chr3R 9284938 intergenic not near genes chr3R 9284994 intergenic not near genes chr3R_7_9280001 chr3R_9280001 RAL-338 714 chr3R 9319582 9319609 chr3R 9320017 9320044 jockey 8 432 2.5 4.0 3.2 1.9 462 chr3R 9319582 intron CG8861 - chr3R 9319813 intron CG8861 - chr3R 9320044 intron CG8861 - chr3R_8_9315001 chr3R_9315001 RAL-338 715 chr3R 9434689 9434721 chr3R 9434776 9434803 8 84 1.0 1.0 1.0 4.0 114 chr3R 9434689 intron ps + chr3R 9434746 intron ps + chr3R 9434803 intron ps + chr3R_8_9430001 chr3R_9430001 RAL-338 716 chr3R 9772380 9772399 chr3R 9772451 9772452 4 69 2.5 2.5 2.5 1.1 72 chr3R 9772380 exon Whamy - chr3R 9772416 exon Whamy - chr3R 9772452 exon Whamy - chr3R_4_9770001 chr3R_9770001 RAL-338 717 chr3R 9898788 9898814 chr3R 9898880 9898906 6 92 2.0 0.5 1.2 2.7 118 chr3R 9898788 intron Glut4EF + chr3R 9898847 intron Glut4EF + chr3R 9898906 intron Glut4EF + chr3R_6_9895001 chr3R_9895001 RAL-338 718 chr3R 10073771 10073790 chr3R 10073879 10073899 6 108 2.0 0.5 1.2 2.7 128 chr3R 10073771 intergenic nerfin-2 +,CG5361 - chr3R 10073835 3` UTR CG5361 - chr3R 10073899 exon CG5361 - chr3R_6_10070001 chr3R_10070001 RAL-338 719 chr3R 10174123 10174136 chr3R 10174205 10174218 6 81 2.5 5.0 3.8 1.2 95 chr3R 10174123 intron CG12814 - chr3R 10174170 intron CG12814 - chr3R 10174218 intron CG12814 - chr3R_6_10170001 chr3R_10170001 RAL-338 720 chr3R 10275557 10275586 chr3R 10275634 10275663 6 77 2.5 1.0 1.8 2.1 106 chr3R 10275557 intron CG43143 + chr3R 10275610 intron CG43143 + chr3R 10275663 intron CG43143 + chr3R_6_10275001 chr3R_10275001 RAL-338 721 chr3R 10403033 10403061 chr3R 10403114 10403141 4 80 0.5 0.5 0.5 2.7 108 chr3R 10403033 3` UTR CG6325 - chr3R 10403087 3` UTR CG6325 - chr3R 10403141 3` UTR CG6325 - chr3R_4_10400001 chr3R_10400001 RAL-338 722 chr3R 10593448 10593458 chr3R 10593529 10593542 4 82 1.5 3.0 2.2 1.2 94 chr3R 10593448 intron hth - chr3R 10593495 intron hth - chr3R 10593542 intron hth - chr3R_4_10590001 chr3R_10590001 RAL-338 723 chr3R 10723870 10723874 chr3R 10726574 10726576 4 2703 3.0 4.0 3.5 0.9 2706 chr3R 10723870 intergenic not near genes chr3R 10725223 intergenic not near genes chr3R 10726576 intergenic not near genes chr3R_4_10725001 chr3R_10725001 RAL-338 724 chr3R 10774891 10774902 chr3R 10775309 10775321 6 418 12.0 22.5 17.2 0.3 430 chr3R 10774891 intron,intron,exon CG45076 -,fau -,CG45078 - chr3R 10775106 intron,intron,intron CG45076 -,fau -,CG45078 - chr3R 10775321 intron,intron,intron CG45076 -,fau -,CG45078 - chr3R_6_10775001 chr3R_10775001 RAL-338 725 chr3R 10906836 10906856 chr3R 10906912 10906929 4 72 1.0 4.5 2.8 1.1 93 chr3R 10906836 intergenic not near genes chr3R 10906882 intergenic not near genes chr3R 10906929 intergenic not near genes chr3R_4_10905001 chr3R_10905001 RAL-338 726 chr3R 11078950 11078980 chr3R 11079030 11079060 9 79 1.5 1.5 1.5 3.6 110 chr3R 11078950 intergenic not near genes chr3R 11079005 intergenic not near genes chr3R 11079060 intergenic not near genes chr3R_9_11075001 chr3R_11075001 RAL-338 727 chr3R 11455234 11455269 chr3R 11455319 11455354 9 82 2.5 2.5 2.5 2.6 120 chr3R 11455234 intron,intron CG17230 +,PGRP-LB - chr3R 11455294 intron,intron CG17230 +,PGRP-LB - chr3R 11455354 intron,intron CG17230 +,PGRP-LB - chr3R_9_11455001 chr3R_11455001 RAL-338 728 chr3R 11485558 11485584 chr3R 11485644 11485669 6 86 3.0 3.5 3.2 1.4 111 chr3R 11485558 intergenic not near genes chr3R 11485614 intergenic not near genes chr3R 11485669 intergenic not near genes chr3R_6_11485001 chr3R_11485001 RAL-338 729 chr3R 11694724 11694749 chr3R 11694817 11694841 5 93 2.0 0.0 1.0 2.5 117 chr3R 11694724 intergenic Fer3 - chr3R 11694782 intergenic Fer3 - chr3R 11694841 intergenic not near genes chr3R_5_11690001 chr3R_11690001 RAL-338 730 chr3R 12022895 12022915 chr3R 12025072 12025092 pogo 5 2177 3.0 3.0 3.0 1.2 2197 chr3R 12022895 intergenic not near genes chr3R 12023994 intergenic not near genes chr3R 12025092 intergenic not near genes chr3R_5_12020001 chr3R_12020001 RAL-338 731 chr3R 12080864 12080893 chr3R 12080941 12080971 4 77 2.5 2.0 2.2 1.2 107 chr3R 12080864 intron CG14741 - chr3R 12080918 intron CG14741 - chr3R 12080971 intron CG14741 - chr3R_4_12080001 chr3R_12080001 RAL-338 732 chr3R 12088730 12088739 chr3R 12089321 12089332 5 592 0.5 0.5 0.5 3.3 602 chr3R 12088730 intron CG14741 - chr3R 12089031 intron CG14741 - chr3R 12089332 intron CG14741 - chr3R_5_12085001 chr3R_12085001 RAL-338 733 chr3R 12135520 12135534 chr3R 12135755 12135773 5 238 2.0 9.0 5.5 0.8 253 chr3R 12135520 intergenic not near genes chr3R 12135646 intergenic not near genes chr3R 12135773 intergenic not near genes chr3R_5_12135001 chr3R_12135001 RAL-338 734 chr3R 12214346 12214365 chr3R 12214434 12214456 7 86 2.5 2.5 2.5 2.0 110 chr3R 12214346 3` UTR CG4848 - chr3R 12214401 3` UTR CG4848 - chr3R 12214456 3` UTR CG4848 - chr3R_7_12210001 chr3R_12210001 RAL-338 735 chr3R 12369215 12369237 chr3R 12369337 12369350 4 115 0.5 3.5 2.0 1.3 135 chr3R 12369215 5` UTR GstD1 - chr3R 12369282 intergenic GstD1 - chr3R 12369350 intergenic GstD1 - chr3R_4_12365001 chr3R_12365001 RAL-338 736 chr3R 12720738 12720755 chr3R 12720908 12720924 5 170 3.5 4.0 3.8 1.0 186 chr3R 12720738 intron Men - chr3R 12720831 intron Men - chr3R 12720924 intron Men - chr3R_5_12720001 chr3R_12720001 RAL-338 737 chr3R 12766408 12766436 chr3R 12766491 12766520 4 79 1.5 3.0 2.2 1.2 112 chr3R 12766408 intron beat-Vc - chr3R 12766464 intron beat-Vc - chr3R 12766520 intron beat-Vc - chr3R_4_12765001 chr3R_12765001 RAL-338 738 chr3R 12825839 12825853 chr3R 12825916 12825933 4 78 1.0 4.0 2.5 1.1 94 chr3R 12825839 intergenic not near genes chr3R 12825886 intergenic not near genes chr3R 12825933 intergenic not near genes chr3R_4_12825001 chr3R_12825001 RAL-338 739 chr3R 12920151 12920183 chr3R 12925354 12925386 copia 8 5202 1.5 1.5 1.5 3.2 5235 chr3R 12920151 intron beat-Vb + chr3R 12922768 intron beat-Vb + chr3R 12925386 intron beat-Vb + chr3R_8_12920001 chr3R_12920001 RAL-338 740 chr3R 13067838 13067870 chr3R 13067918 13067947 7 79 1.0 1.5 1.2 3.2 109 chr3R 13067838 intron sim + chr3R 13067892 intron sim + chr3R 13067947 intron sim + chr3R_7_13065001 chr3R_13065001 RAL-338 741 chr3R 13075360 13075378 chr3R 13075441 13075459 4 81 1.0 0.5 0.8 2.2 99 chr3R 13075360 intron sim + chr3R 13075410 intron sim + chr3R 13075459 intron sim + chr3R_4_13075001 chr3R_13075001 RAL-338 742 chr3R 13143044 13143060 chr3R 13148615 13148618 mdg3 4 5570 3.0 2.0 2.5 1.1 5574 chr3R 13143044 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13145831 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13148618 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_4_13145001 chr3R_13145001 RAL-338 743 chr3R 13417801 13417827 chr3R 13418092 13418116 8 291 2.5 1.5 2.0 2.7 315 chr3R 13417801 intergenic not near genes chr3R 13417958 intergenic not near genes chr3R 13418116 intergenic not near genes chr3R_8_13415001 chr3R_13415001 RAL-338 744 chr3R 13505854 13505864 chr3R 13505930 13505939 4 76 8.0 4.0 6.0 0.6 85 chr3R 13505854 intergenic not near genes chr3R 13505896 intergenic not near genes chr3R 13505939 intergenic not near genes chr3R_4_13505001 chr3R_13505001 RAL-338 745 chr3R 13603057 13603071 chr3R 13603148 13603162 4 91 2.0 0.5 1.2 1.8 105 chr3R 13603057 intergenic not near genes chr3R 13603110 intergenic not near genes chr3R 13603162 intergenic not near genes chr3R_4_13600001 chr3R_13600001 RAL-338 746 chr3R 13672940 13672976 chr3R 13673018 13673054 8 77 0.5 1.0 0.8 4.4 114 chr3R 13672940 intron Task6 - chr3R 13672997 intron Task6 - chr3R 13673054 intron Task6 - chr3R_8_13670001 chr3R_13670001 RAL-338 747 chr3R 13693028 13693028 chr3R 21907534 21907536 14 8214507 6.0 13.0 9.5 1.3 8214508 chr3R 13693028 3` UTR flfl + chr3R 17800282 exon CG17803 - chr3R 21907536 intergenic CG6678 + chr3R_14_17800001 chr3R_17800001 RAL-338 748 chr3R 13782054 13782089 chr3R 13782135 13782169 12 80 2.0 1.0 1.5 4.8 115 chr3R 13782054 exon CG9286 + chr3R 13782112 intergenic CG9286 +,Dip-B + chr3R 13782169 intergenic CG9286 +,Dip-B + chr3R_12_13780001 chr3R_13780001 RAL-338 749 chr3R 13828847 13828872 chr3R 13828933 13828958 9 84 0.5 0.0 0.2 7.5 111 chr3R 13828847 intergenic CR43300 + chr3R 13828902 intergenic CR43300 + chr3R 13828958 intergenic not near genes chr3R_9_13825001 chr3R_13825001 RAL-338 750 chr3R 14058123 14058152 chr3R 14058243 14058272 4 120 2.0 0.5 1.2 1.8 149 chr3R 14058123 intron foxo + chr3R 14058198 intron foxo + chr3R 14058272 intron foxo + chr3R_4_14055001 chr3R_14055001 RAL-338 751 chr3R 14123767 14123779 chr3R 14123842 14123858 6 80 2.5 0.0 1.2 2.7 91 chr3R 14123767 intron twf + chr3R 14123812 intron twf + chr3R 14123858 intron twf + chr3R_6_14120001 chr3R_14120001 RAL-338 752 chr3R 14426057 14426068 chr3R 14426161 14426172 5 104 2.5 3.0 2.8 1.3 115 chr3R 14426057 intron cv-c - chr3R 14426114 intron cv-c - chr3R 14426172 intron cv-c - chr3R_5_14425001 chr3R_14425001 RAL-338 753 chr3R 14458894 14459079 chr3R 14458966 14459199 11 109 3.0 0.5 1.8 3.9 305 chr3R 14458894 intron cv-c - chr3R 14459046 intron cv-c - chr3R 14459199 intron cv-c - chr3R_11_14455001 chr3R_14455001 RAL-338 754 chr3R 14497404 14497437 chr3R 14497485 14497518 9 78 2.5 1.0 1.8 3.2 114 chr3R 14497404 intron CR44177 + chr3R 14497461 intron CR44177 + chr3R 14497518 intron CR44177 + chr3R_9_14495001 chr3R_14495001 RAL-338 755 chr3R 14526340 14526363 chr3R 14526520 14526542 8 180 1.0 0.5 0.8 4.4 202 chr3R 14526340 intron Pde6 - chr3R 14526441 intron Pde6 - chr3R 14526542 intron Pde6 - chr3R_8_14525001 chr3R_14525001 RAL-338 756 chr3R 14549805 14549825 chr3R 14549881 14549901 4 76 5.0 1.5 3.2 1.0 96 chr3R 14549805 intron Pde6 - chr3R 14549853 intron Pde6 - chr3R 14549901 intron Pde6 - chr3R_4_14545001 chr3R_14545001 RAL-338 757 chr3R 14560663 14560691 chr3R 14560858 14560886 4 195 2.0 1.0 1.5 1.6 223 chr3R 14560663 intergenic CG14850 + chr3R 14560774 intergenic CG14850 + chr3R 14560886 intergenic CG14850 + chr3R_4_14560001 chr3R_14560001 RAL-338 758 chr3R 14603481 14603511 chr3R 14603557 14603587 7 71 3.5 3.5 3.5 1.6 106 chr3R 14603481 intron stumps + chr3R 14603534 intron stumps + chr3R 14603587 intron stumps + chr3R_7_14600001 chr3R_14600001 RAL-338 759 chr3R 14704387 14704412 chr3R 14704462 14704489 5 77 0.0 3.0 1.5 2.0 102 chr3R 14704387 intron kibra - chr3R 14704438 intron kibra - chr3R 14704489 intron kibra - chr3R_5_14700001 chr3R_14700001 RAL-338 760 chr3R 14821615 14821646 chr3R 14821764 14821795 5 149 1.0 0.5 0.8 2.8 180 chr3R 14821615 intron btsz - chr3R 14821705 intron btsz - chr3R 14821795 intron btsz - chr3R_5_14820001 chr3R_14820001 RAL-338 761 chr3R 14880744 14880766 chr3R 14880959 14880981 4 215 14.5 15.5 15.0 0.2 237 chr3R 14880744 exon CG3631 + chr3R 14880862 intron CG3631 + chr3R 14880981 exon CG3631 + chr3R_4_14880001 chr3R_14880001 RAL-338 762 chr3R 14881504 14881776 chr3R 14881607 14881869 14 106 17.0 13.0 15.0 0.9 365 chr3R 14881504 exon CG3631 + chr3R 14881686 exon CG3631 + chr3R 14881869 exon CG3631 + chr3R_14_14880001 chr3R_14880001 RAL-338 763 chr3R 14911567 14911597 chr3R 14911672 14911703 9 105 3.5 1.5 2.5 2.6 136 chr3R 14911567 intergenic not near genes chr3R 14911635 intergenic not near genes chr3R 14911703 intergenic not near genes chr3R_9_14910001 chr3R_14910001 RAL-338 764 chr3R 14973583 14973621 chr3R 14974072 14974079 7 480 1.0 1.5 1.2 3.2 496 chr3R 14973583 intergenic not near genes chr3R 14973831 intergenic not near genes chr3R 14974079 intergenic not near genes chr3R_7_14970001 chr3R_14970001 RAL-338 765 chr3R 15006860 15006881 chr3R 15007238 15007260 4 379 3.5 4.0 3.8 0.8 400 chr3R 15006860 intergenic not near genes chr3R 15007060 intergenic not near genes chr3R 15007260 intergenic not near genes chr3R_4_15005001 chr3R_15005001 RAL-338 766 chr3R 15079428 15079443 chr3R 15079562 15079574 4 133 1.0 1.5 1.2 1.8 146 chr3R 15079428 3` UTR CG6966 - chr3R 15079501 3` UTR CG6966 - chr3R 15079574 3` UTR CG6966 - chr3R_4_15075001 chr3R_15075001 RAL-338 767 chr3R 15079819 15079838 chr3R 15080059 15080079 pogo 5 241 0.5 0.5 0.5 3.3 260 chr3R 15079819 3` UTR CG6966 - chr3R 15079949 3` UTR CG6966 - chr3R 15080079 3` UTR CG6966 - chr3R_5_15075001 chr3R_15075001 RAL-338 768 chr3R 15084147 15084173 chr3R 15084279 15084305 4 132 0.5 2.0 1.2 1.8 158 chr3R 15084147 intron CG6966 - chr3R 15084226 intron CG6966 - chr3R 15084305 intron CG6966 - chr3R_4_15080001 chr3R_15080001 RAL-338 769 chr3R 15151168 15151184 chr3R 15151251 15151264 4 82 0.5 3.5 2.0 1.3 96 chr3R 15151168 intron Gyc88E + chr3R 15151216 intron Gyc88E + chr3R 15151264 intron Gyc88E + chr3R_4_15150001 chr3R_15150001 RAL-338 770 chr3R 15160567 15160590 chr3R 15160665 15160686 9 97 1.0 0.5 0.8 5.0 119 chr3R 15160567 intron Gyc88E + chr3R 15160626 intron Gyc88E + chr3R 15160686 intron Gyc88E + chr3R_9_15160001 chr3R_15160001 RAL-338 771 chr3R 15286984 15286988 chr3R 21907534 21907536 8 6620549 6.5 13.0 9.8 0.7 6620552 chr3R 15286984 intron Tm1 + chr3R 18597260 intron,exon qin +,CG14304 - chr3R 21907536 intergenic CG6678 + chr3R_8_18595001 chr3R_18595001 RAL-338 772 chr3R 15416247 15416277 chr3R 15416327 15416357 5 78 2.5 0.5 1.5 2.0 110 chr3R 15416247 3` UTR Atx2 + chr3R 15416302 3` UTR Atx2 + chr3R 15416357 3` UTR Atx2 + chr3R_5_15415001 chr3R_15415001 RAL-338 773 chr3R 15601163 15601196 chr3R 15608685 15608718 412 10 7521 2.5 0.5 1.5 4.0 7555 chr3R 15601163 intergenic not near genes chr3R 15604940 intergenic not near genes chr3R 15608718 intergenic not near genes chr3R_10_15600001 chr3R_15600001 RAL-338 774 chr3R 15618736 15618759 chr3R 15626210 15626231 blood 6 7474 1.0 2.5 1.8 2.1 7495 chr3R 15618736 intergenic not near genes chr3R 15622484 intergenic not near genes chr3R 15626231 intergenic not near genes chr3R_6_15620001 chr3R_15620001 RAL-338 775 chr3R 15691187 15691322 chr3R 15691290 15691409 6 92 0.0 0.0 0.0 6.0 222 chr3R 15691187 intergenic not near genes chr3R 15691298 intergenic not near genes chr3R 15691409 intergenic not near genes chr3R_6_15690001 chr3R_15690001 RAL-338 776 chr3R 15709662 15709668 chr3R 15709771 15709797 4 124 1.0 1.5 1.2 1.8 135 chr3R 15709662 intergenic not near genes chr3R 15709730 intergenic not near genes chr3R 15709797 intergenic not near genes chr3R_4_15705001 chr3R_15705001 RAL-338 777 chr3R 15878602 15878636 chr3R 15878682 15878715 9 79 4.5 4.0 4.2 1.7 113 chr3R 15878602 intergenic not near genes chr3R 15878658 intergenic not near genes chr3R 15878715 intergenic not near genes chr3R_9_15875001 chr3R_15875001 RAL-338 778 chr3R 16201817 16201823 chr3R 16201895 16201901 5 78 2.0 0.0 1.0 2.5 84 chr3R 16201817 intron CG6126 - chr3R 16201859 intron CG6126 - chr3R 16201901 intron CG6126 - chr3R_5_16200001 chr3R_16200001 RAL-338 779 chr3R 16368462 16368487 chr3R 16368532 16368565 5 77 1.5 1.5 1.5 2.0 103 chr3R 16368462 intergenic CG14880 -,CG10317 - chr3R 16368514 intergenic CG14880 -,CG10317 - chr3R 16368565 intergenic CG14880 -,CG10317 - chr3R_5_16365001 chr3R_16365001 RAL-338 780 chr3R 16472584 16472598 chr3R 16472656 16472658 7 72 6.5 5.5 6.0 1.0 74 chr3R 16472584 intergenic Gyc-89Da + chr3R 16472621 5` UTR Gyc-89Da + chr3R 16472658 5` UTR Gyc-89Da + chr3R_7_16470001 chr3R_16470001 RAL-338 781 chr3R 16756327 16756342 chr3R 16762513 16762533 diver 6 6190 1.5 1.0 1.2 2.7 6206 chr3R 16756327 intron bxd - chr3R 16759430 intron bxd - chr3R 16762533 intron bxd - chr3R_6_16755001 chr3R_16755001 RAL-338 782 chr3R 16774199 16774213 chr3R 16774305 16774319 5 106 2.5 2.5 2.5 1.4 120 chr3R 16774199 intergenic not near genes chr3R 16774259 intergenic not near genes chr3R 16774319 intergenic not near genes chr3R_5_16770001 chr3R_16770001 RAL-338 783 chr3R 16852924 16852942 chr3R 16853008 16853013 7 81 4.0 0.5 2.2 2.2 89 chr3R 16852924 intron,intron iab-8 -,iab-4 + chr3R 16852968 intron,intron iab-8 -,iab-4 + chr3R 16853013 intron,intron iab-8 -,iab-4 + chr3R_7_16850001 chr3R_16850001 RAL-338 784 chr3R 16996307 16996322 chr3R 16996383 16996398 4 76 0.5 0.5 0.5 2.7 91 chr3R 16996307 intergenic CG3534 +,CG17556 - chr3R 16996352 intergenic CG3534 +,CG17556 - chr3R 16996398 intergenic CG3534 +,CG17556 - chr3R_4_16995001 chr3R_16995001 RAL-338 785 chr3R 17226020 17226047 chr3R 17226114 17226145 7 97 2.0 4.0 3.0 1.8 125 chr3R 17226020 intergenic not near genes chr3R 17226082 intergenic not near genes chr3R 17226145 intergenic not near genes chr3R_7_17225001 chr3R_17225001 RAL-338 786 chr3R 17250240 17250264 chr3R 17250377 17250403 5 138 1.0 0.5 0.8 2.8 163 chr3R 17250240 intron beat-IIb - chr3R 17250322 intron beat-IIb - chr3R 17250403 intron beat-IIb - chr3R_5_17250001 chr3R_17250001 RAL-338 787 chr3R 17294662 17294686 chr3R 17295090 17295101 BS 4 425 2.5 0.0 1.2 1.8 439 chr3R 17294662 intergenic not near genes chr3R 17294882 intergenic not near genes chr3R 17295101 intergenic not near genes chr3R_4_17290001 chr3R_17290001 RAL-338 788 chr3R 17346697 17346715 chr3R 17348257 17348276 F-element 5 1561 1.5 3.5 2.5 1.4 1579 chr3R 17346697 intron beat-IIa - chr3R 17347486 intron beat-IIa - chr3R 17348276 intron beat-IIa - chr3R_5_17345001 chr3R_17345001 RAL-338 789 chr3R 17420944 17420966 chr3R 17425537 17425550 7 4587 8.5 12.0 10.2 0.6 4606 chr3R 17420944 exon CG42835 + chr3R 17423247 intergenic not near genes chr3R 17425550 intergenic CG5873 + chr3R_7_17420001 chr3R_17420001 RAL-338 790 chr3R 17461203 17461229 chr3R 17461285 17461311 5 82 1.0 1.5 1.2 2.3 108 chr3R 17461203 intergenic not near genes chr3R 17461257 intergenic not near genes chr3R 17461311 intergenic not near genes chr3R_5_17460001 chr3R_17460001 RAL-338 791 chr3R 17521581 17521588 chr3R 17521722 17521748 4 155 2.0 2.0 2.0 1.3 167 chr3R 17521581 intergenic not near genes chr3R 17521664 intergenic not near genes chr3R 17521748 intergenic not near genes chr3R_4_17520001 chr3R_17520001 RAL-338 792 chr3R 17658459 17658490 chr3R 17658645 17658676 6 183 1.0 2.5 1.8 2.1 217 chr3R 17658459 intron CG14322 + chr3R 17658568 intron CG14322 + chr3R 17658676 intron CG14322 + chr3R_6_17655001 chr3R_17655001 RAL-338 793 chr3R 17729727 17729758 chr3R 17729804 17729835 10 76 3.5 2.0 2.8 2.6 108 chr3R 17729727 intron Lgr1 + chr3R 17729781 intron Lgr1 + chr3R 17729835 intron Lgr1 + chr3R_10_17725001 chr3R_17725001 RAL-338 794 chr3R 17925854 17925888 chr3R 17927321 17927325 hobo 8 1460 2.0 6.5 4.2 1.5 1471 chr3R 17925854 intron cpo + chr3R 17926590 intron cpo + chr3R 17927325 intron cpo + chr3R_8_17925001 chr3R_17925001 RAL-338 795 chr3R 18032785 18032805 chr3R 18040456 18040476 opus 4 7672 0.5 0.5 0.5 2.7 7691 chr3R 18032785 intergenic not near genes chr3R 18036630 intergenic not near genes chr3R 18040476 intergenic not near genes chr3R_4_18035001 chr3R_18035001 RAL-338 796 chr3R 18442907 18442928 chr3R 18442992 18442999 4 81 3.0 1.0 2.0 1.3 92 chr3R 18442907 intron fru - chr3R 18442953 intron fru - chr3R 18442999 intron fru - chr3R_4_18440001 chr3R_18440001 RAL-338 797 chr3R 18501604 18501621 chr3R 18501685 18501702 5 81 3.5 2.5 3.0 1.2 98 chr3R 18501604 intron fru - chr3R 18501653 intron fru - chr3R 18501702 intron fru - chr3R_5_18500001 chr3R_18500001 RAL-338 798 chr3R 18606507 18606523 chr3R 18610736 18610755 F-element 4 4231 2.5 0.5 1.5 1.6 4248 chr3R 18606507 intron,intron qin +,CG14304 - chr3R 18608631 intron,intron qin +,CG14304 - chr3R 18610755 intron,intron qin +,CG14304 - chr3R_4_18605001 chr3R_18605001 RAL-338 799 chr3R 18812075 18812109 chr3R 18812153 18812185 8 78 2.5 3.5 3.0 2.0 110 chr3R 18812075 intron CG18208 - chr3R 18812130 intron CG18208 - chr3R 18812185 intron CG18208 - chr3R_8_18810001 chr3R_18810001 RAL-338 800 chr3R 18888835 18888863 chr3R 18889170 18889198 9 334 7.0 3.5 5.2 1.5 363 chr3R 18888835 intergenic not near genes chr3R 18889016 intergenic not near genes chr3R 18889198 intergenic not near genes chr3R_9_18885001 chr3R_18885001 RAL-338 801 chr3R 18891277 18891290 chr3R 18891400 18891414 7 125 1.5 8.5 5.0 1.2 137 chr3R 18891277 intergenic not near genes chr3R 18891346 intergenic not near genes chr3R 18891414 intergenic not near genes chr3R_7_18890001 chr3R_18890001 RAL-338 802 chr3R 19014091 19014123 chr3R 19014171 19014188 7 75 4.0 2.0 3.0 1.8 97 chr3R 19014091 intron gukh + chr3R 19014140 intron gukh + chr3R 19014188 intron gukh + chr3R_7_19010001 chr3R_19010001 RAL-338 803 chr3R 19107553 19107572 chr3R 19107630 19107649 4 77 0.0 1.0 0.5 2.7 96 chr3R 19107553 intron CG6040 + chr3R 19107601 intron CG6040 + chr3R 19107649 intron CG6040 + chr3R_4_19105001 chr3R_19105001 RAL-338 804 chr3R 19140277 19140288 chr3R 19140714 19140734 5 445 3.5 1.0 2.2 1.6 457 chr3R 19140277 3` UTR Ppcs - chr3R 19140506 3` UTR Ppcs - chr3R 19140734 3` UTR Ppcs - chr3R_5_19140001 chr3R_19140001 RAL-338 805 chr3R 19140290 19140298 chr3R 19140713 19140721 4 433 2.5 0.5 1.5 1.6 431 chr3R 19140290 3` UTR Ppcs - chr3R 19140506 3` UTR Ppcs - chr3R 19140721 3` UTR Ppcs - chr3R_4_19140001 chr3R_19140001 RAL-338 806 chr3R 19181023 19181042 chr3R 19181159 19181179 11 136 7.0 4.5 5.8 1.6 156 chr3R 19181023 intron CG31475 + chr3R 19181101 intron CG31475 + chr3R 19181179 intron CG31475 + chr3R_11_19180001 chr3R_19180001 RAL-338 807 chr3R 19364439 19364454 chr3R 19364588 19364604 4 150 2.0 1.5 1.8 1.4 165 chr3R 19364439 intergenic not near genes chr3R 19364522 intergenic not near genes chr3R 19364604 intergenic not near genes chr3R_4_19360001 chr3R_19360001 RAL-338 808 chr3R 19570312 19570338 chr3R 19570386 19570413 11 75 3.0 2.5 2.8 2.9 101 chr3R 19570312 intron Dys + chr3R 19570362 intron Dys + chr3R 19570413 intron Dys + chr3R_11_19570001 chr3R_19570001 RAL-338 809 chr3R 19659394 19659426 chr3R 19659487 19659498 8 90 2.0 2.0 2.0 2.7 104 chr3R 19659394 intergenic ort + chr3R 19659446 intergenic ort + chr3R 19659498 intergenic ort + chr3R_8_19655001 chr3R_19655001 RAL-338 810 chr3R 19783012 19783037 chr3R 19783125 19783154 7 115 2.5 0.5 1.5 2.8 142 chr3R 19783012 exon CG11407 + chr3R 19783083 3` UTR CG11407 + chr3R 19783154 intergenic CG11407 +,CG11453 + chr3R_7_19780001 chr3R_19780001 RAL-338 811 chr3R 19859964 19859997 chr3R 19860044 19860053 9 76 4.5 2.0 3.2 2.1 89 chr3R 19859964 intron Ire1 - chr3R 19860008 intron Ire1 - chr3R 19860053 intron Ire1 - chr3R_9_19860001 chr3R_19860001 RAL-338 812 chr3R 19943881 19943893 chr3R 19943961 19943973 5 80 4.5 0.0 2.2 1.6 92 chr3R 19943881 intron Hs6st - chr3R 19943927 intron Hs6st - chr3R 19943973 intron Hs6st - chr3R_5_19940001 chr3R_19940001 RAL-338 813 chr3R 19950035 19950064 chr3R 19950110 19950142 7 77 1.5 1.0 1.2 3.2 107 chr3R 19950035 intron Hs6st - chr3R 19950088 intron Hs6st - chr3R 19950142 intron Hs6st - chr3R_7_19950001 chr3R_19950001 RAL-338 814 chr3R 19989853 19989876 chr3R 19989929 19989956 5 78 3.5 1.0 2.2 1.6 103 chr3R 19989853 intron Hs6st - chr3R 19989904 intron Hs6st - chr3R 19989956 intron Hs6st - chr3R_5_19985001 chr3R_19985001 RAL-338 815 chr3R 20197794 20197810 chr3R 20197873 20197890 7 79 2.5 7.5 5.0 1.2 96 chr3R 20197794 intergenic not near genes chr3R 20197842 intergenic not near genes chr3R 20197890 intergenic not near genes chr3R_7_20195001 chr3R_20195001 RAL-338 816 chr3R 20331008 20331031 chr3R 20331494 20331517 roo 4 485 0.5 0.0 0.2 3.3 509 chr3R 20331008 intergenic Sirt2 + chr3R 20331262 intergenic Sirt2 + chr3R 20331517 intergenic not near genes chr3R_4_20330001 chr3R_20330001 RAL-338 817 chr3R 20458476 20458509 chr3R 20458554 20458588 8 78 1.5 4.0 2.8 2.1 112 chr3R 20458476 intron Gfrl - chr3R 20458532 intron Gfrl - chr3R 20458588 intron Gfrl - chr3R_8_20455001 chr3R_20455001 RAL-338 818 chr3R 20489018 20489038 chr3R 20489094 20489114 5 76 2.0 2.5 2.2 1.6 96 chr3R 20489018 intergenic not near genes chr3R 20489066 intergenic not near genes chr3R 20489114 intergenic not near genes chr3R_5_20485001 chr3R_20485001 RAL-338 819 chr3R 20506585 20506611 chr3R 20507388 20507414 BS 5 803 1.5 0.5 1.0 2.5 829 chr3R 20506585 intergenic Or92a + chr3R 20507000 intergenic CG4288 - chr3R 20507414 3` UTR CG4288 - chr3R_5_20505001 chr3R_20505001 RAL-338 820 chr3R 20703493 20703509 chr3R 20703887 20703903 5 394 1.5 1.5 1.5 2.0 410 chr3R 20703493 intron Oamb - chr3R 20703698 intron Oamb - chr3R 20703903 intron Oamb - chr3R_5_20700001 chr3R_20700001 RAL-338 821 chr3R 20704783 20704811 chr3R 20704864 20704898 5 86 2.0 0.0 1.0 2.5 115 chr3R 20704783 intron Oamb - chr3R 20704840 intron Oamb - chr3R 20704898 intron Oamb - chr3R_5_20700001 chr3R_20700001 RAL-338 822 chr3R 20722855 20722883 chr3R 20722982 20723007 5 126 3.5 2.5 3.0 1.2 152 chr3R 20722855 intergenic not near genes chr3R 20722931 intergenic not near genes chr3R 20723007 intergenic not near genes chr3R_5_20720001 chr3R_20720001 RAL-338 823 chr3R 20767503 20767537 chr3R 20767595 20767633 4 88 5.0 1.0 3.0 1.0 130 chr3R 20767503 intron Syp + chr3R 20767568 intron Syp + chr3R 20767633 intron Syp + chr3R_4_20765001 chr3R_20765001 RAL-338 824 chr3R 20771706 20771730 chr3R 20771787 20771799 4 78 0.0 5.0 2.5 1.1 93 chr3R 20771706 intron,intron Syp +,Takl1 - chr3R 20771752 intron,intron Syp +,Takl1 - chr3R 20771799 intron,exon Syp +,Takl1 - chr3R_4_20770001 chr3R_20770001 RAL-338 825 chr3R 20841564 20841597 chr3R 20841727 20841760 4 163 1.0 1.5 1.2 1.8 196 chr3R 20841564 intergenic not near genes chr3R 20841662 intergenic CG15695 + chr3R 20841760 intergenic CG15695 + chr3R_4_20840001 chr3R_20840001 RAL-338 826 chr3R 20870253 20870284 chr3R 20870337 20870368 11 84 2.0 1.5 1.8 3.9 115 chr3R 20870253 intergenic not near genes chr3R 20870310 intergenic not near genes chr3R 20870368 intergenic not near genes chr3R_11_20870001 chr3R_20870001 RAL-338 827 chr3R 20942818 20942825 chr3R 20942894 20942901 4 76 4.5 3.0 3.8 0.8 83 chr3R 20942818 intron CG31191 - chr3R 20942860 intron CG31191 - chr3R 20942901 intron CG31191 - chr3R_4_20940001 chr3R_20940001 RAL-338 828 chr3R 20942828 20942839 chr3R 20942893 20942905 7 73 3.5 3.0 3.2 1.7 77 chr3R 20942828 intron CG31191 - chr3R 20942866 intron CG31191 - chr3R 20942905 intron CG31191 - chr3R_7_20940001 chr3R_20940001 RAL-338 829 chr3R 21154553 21154585 chr3R 21154758 21154800 5 213 2.0 0.0 1.0 2.5 247 chr3R 21154553 intron SNF4Agamma + chr3R 21154676 intron SNF4Agamma + chr3R 21154800 intron SNF4Agamma + chr3R_5_21150001 chr3R_21150001 RAL-338 830 chr3R 21240446 21240474 chr3R 21240538 21240566 7 91 2.5 1.0 1.8 2.5 120 chr3R 21240446 intergenic not near genes chr3R 21240506 intergenic not near genes chr3R 21240566 intergenic not near genes chr3R_7_21240001 chr3R_21240001 RAL-338 831 chr3R 21322979 21322994 chr3R 21323057 21323071 5 76 1.5 0.0 0.8 2.8 92 chr3R 21322979 intron CG16791 - chr3R 21323025 intron CG16791 - chr3R 21323071 intron CG16791 - chr3R_5_21320001 chr3R_21320001 RAL-338 832 chr3R 21586417 21586450 chr3R 21586501 21586534 13 83 3.0 3.5 3.2 3.1 117 chr3R 21586417 intron InR - chr3R 21586476 intron InR - chr3R 21586534 intron InR - chr3R_13_21585001 chr3R_21585001 RAL-338 833 chr3R 21758686 21758719 chr3R 21758767 21758772 7 74 3.0 2.5 2.8 1.8 86 chr3R 21758686 intergenic CG42335 + chr3R 21758729 intergenic CG42335 + chr3R 21758772 5` UTR CG42335 + chr3R_7_21755001 chr3R_21755001 RAL-338 834 chr3R 21761135 21761154 chr3R 21768511 21768545 mdg1 6 7380 2.0 4.0 3.0 1.5 7410 chr3R 21761135 exon CG42335 + chr3R 21764840 intron CG42335 + chr3R 21768545 exon CG42335 + chr3R_6_21760001 chr3R_21760001 RAL-338 835 chr3R 21784859 21784885 chr3R 21784957 21784980 8 97 1.5 0.0 0.8 4.4 121 chr3R 21784859 3` UTR,3` UTR CASK -,CRG - chr3R 21784920 3` UTR,3` UTR CASK -,CRG - chr3R 21784980 3` UTR,3` UTR CASK -,CRG - chr3R_8_21780001 chr3R_21780001 RAL-338 836 chr3R 21907534 21907534 chr3R 28831801 28831802 21 6924268 18.0 14.5 16.2 1.2 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_21_25365001 chr3R_25365001 RAL-338 837 chr3R 8339246 8339247 chr3R 21907535 21907535 4 13568288 6.5 13.5 10.0 0.4 13568289 chr3R 8339246 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907535 intergenic CG6678 + chr3R_4_15120001 chr3R_15120001 RAL-338 838 chr3R 21907535 21907535 chr3R 28831801 28831802 30 6924266 17.5 14.5 16.0 1.8 6924267 chr3R 21907535 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_30_25365001 chr3R_25365001 RAL-338 839 chr3R 8339246 8339247 chr3R 21907536 21907536 4 13568289 6.5 14.0 10.2 0.4 13568290 chr3R 8339246 intergenic not near genes chr3R 15123391 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_4_15120001 chr3R_15120001 RAL-338 840 chr3R 21907536 21907536 chr3R 28831801 28831802 37 6924266 17.0 14.5 15.8 2.2 6924266 chr3R 21907536 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831802 intron WASp - chr3R_37_25365001 chr3R_25365001 RAL-338 841 chr3R 21985232 21985241 chr3R 21985337 21985346 4 105 3.5 0.0 1.8 1.4 114 chr3R 21985232 intron Eip93F + chr3R 21985289 intron Eip93F + chr3R 21985346 intron Eip93F + chr3R_4_21985001 chr3R_21985001 RAL-338 842 chr3R 22110332 22110363 chr3R 22110554 22110585 5 222 21.5 15.5 18.5 0.3 253 chr3R 22110332 intergenic CG5778 - chr3R 22110458 intergenic CG5778 - chr3R 22110585 intergenic CG5778 - chr3R_5_22110001 chr3R_22110001 RAL-338 843 chr3R 22450557 22450578 chr3R 22453186 22453218 NOF 5 2638 2.0 2.5 2.2 1.6 2661 chr3R 22450557 intron CG34376 + chr3R 22451888 intron CG34376 + chr3R 22453218 intron CG34376 + chr3R_5_22450001 chr3R_22450001 RAL-338 844 chr3R 22507794 22507818 chr3R 22507878 22507902 4 83 1.5 2.0 1.8 1.4 108 chr3R 22507794 intron Octbeta1R + chr3R 22507848 intron Octbeta1R + chr3R 22507902 intron Octbeta1R + chr3R_4_22505001 chr3R_22505001 RAL-338 845 chr3R 22537637 22537647 chr3R 22537716 22537727 4 78 7.5 5.0 6.2 0.6 90 chr3R 22537637 intron CG5326 - chr3R 22537682 intron CG5326 - chr3R 22537727 intron CG5326 - chr3R_4_22535001 chr3R_22535001 RAL-338 846 chr3R 22927883 22927900 chr3R 22927972 22927994 4 92 5.5 8.0 6.8 0.5 111 chr3R 22927883 intron klg + chr3R 22927938 intron klg + chr3R 22927994 intron klg + chr3R_4_22925001 chr3R_22925001 RAL-338 847 chr3R 22974301 22974311 chr3R 22974377 22974381 6 80 0.5 2.5 1.5 2.4 80 chr3R 22974301 intergenic not near genes chr3R 22974341 intergenic not near genes chr3R 22974381 intergenic not near genes chr3R_6_22970001 chr3R_22970001 RAL-338 848 chr3R 23073657 23073683 chr3R 23073745 23073770 9 85 4.0 1.5 2.8 2.4 113 chr3R 23073657 intron CG13830 - chr3R 23073714 intron CG13830 - chr3R 23073770 intron CG13830 - chr3R_9_23070001 chr3R_23070001 RAL-338 849 chr3R 23210639 23210669 chr3R 23210724 23210753 10 83 0.5 0.5 0.5 6.7 114 chr3R 23210639 intron cnc - chr3R 23210696 intron cnc - chr3R 23210753 intron cnc - chr3R_10_23210001 chr3R_23210001 RAL-338 850 chr3R 23291250 23291278 chr3R 23291336 23291363 4 86 3.0 2.5 2.8 1.1 113 chr3R 23291250 3` UTR pnt - chr3R 23291306 3` UTR pnt - chr3R 23291363 3` UTR pnt - chr3R_4_23290001 chr3R_23290001 RAL-338 851 chr3R 23335434 23335451 chr3R 23335511 23335529 5 76 1.0 2.5 1.8 1.8 95 chr3R 23335434 intron pnt - chr3R 23335482 intron pnt - chr3R 23335529 intron pnt - chr3R_5_23335001 chr3R_23335001 RAL-338 852 chr3R 23360180 23360206 chr3R 23360256 23360282 7 76 0.0 1.5 0.8 3.9 102 chr3R 23360180 3` UTR RpS3 + chr3R 23360231 intergenic RpS3 + chr3R 23360282 intergenic RpS3 + chr3R_7_23360001 chr3R_23360001 RAL-338 853 chr3R 23431076 23431103 chr3R 23431145 23431178 4 71 1.5 1.5 1.5 1.6 102 chr3R 23431076 intron CG4374 - chr3R 23431127 intron CG4374 - chr3R 23431178 intron CG4374 - chr3R_4_23430001 chr3R_23430001 RAL-338 854 chr3R 23446281 23446309 chr3R 23446355 23446387 8 76 4.0 0.5 2.2 2.5 106 chr3R 23446281 intron CG4374 - chr3R 23446334 intron CG4374 - chr3R 23446387 intron CG4374 - chr3R_8_23445001 chr3R_23445001 RAL-338 855 chr3R 23558406 23558427 chr3R 23560187 23560208 Bari1 6 1781 0.0 1.0 0.5 4.0 1802 chr3R 23558406 intron beat-IV + chr3R 23559307 intron beat-IV + chr3R 23560208 intron beat-IV + chr3R_6_23555001 chr3R_23555001 RAL-338 856 chr3R 23589890 23589909 chr3R 23590299 23590318 6 406 1.0 2.0 1.5 2.4 428 chr3R 23589890 intergenic CG10182 -,CG33337 - chr3R 23590104 intergenic CG33337 -,CG10182 - chr3R 23590318 exon CG33337 - chr3R_6_23590001 chr3R_23590001 RAL-338 857 chr3R 23629834 23629844 chr3R 23629913 23629923 6 77 3.0 3.0 3.0 1.5 89 chr3R 23629834 intron CG31145 - chr3R 23629878 intron CG31145 - chr3R 23629923 intron CG31145 - chr3R_6_23625001 chr3R_23625001 RAL-338 858 chr3R 23835421 23835426 chr3R 23844571 23844576 roo 5 9150 2.0 0.5 1.2 2.3 9155 chr3R 23835421 intron CG34355 + chr3R 23839998 intron CG34355 + chr3R 23844576 intron CG34355 + chr3R_5_23835001 chr3R_23835001 RAL-338 859 chr3R 23944910 23944936 chr3R 23944995 23945021 8 85 2.5 0.5 1.5 3.2 111 chr3R 23944910 intron CG12268 - chr3R 23944966 intron CG12268 - chr3R 23945021 exon CG12268 - chr3R_8_23940001 chr3R_23940001 RAL-338 860 chr3R 23949041 23949062 chr3R 23949117 23949139 4 76 2.0 1.0 1.5 1.6 98 chr3R 23949041 intergenic not near genes chr3R 23949090 intergenic not near genes chr3R 23949139 intergenic not near genes chr3R_4_23945001 chr3R_23945001 RAL-338 861 chr3R 24006446 24006451 chr3R 24006526 24006533 4 81 1.5 5.5 3.5 0.9 87 chr3R 24006446 intron KrT95D - chr3R 24006490 intron KrT95D - chr3R 24006533 intron KrT95D - chr3R_4_24005001 chr3R_24005001 RAL-338 862 chr3R 24072087 24072096 chr3R 24072524 24072534 jockey 5 436 3.5 0.0 1.8 1.8 447 chr3R 24072087 intron 4EHP - chr3R 24072310 intron 4EHP - chr3R 24072534 intron 4EHP - chr3R_5_24070001 chr3R_24070001 RAL-338 863 chr3R 24076915 24076944 chr3R 24078382 24078411 hobo 4 1466 3.0 2.0 2.5 1.1 1496 chr3R 24076915 intron 4EHP - chr3R 24077663 intron 4EHP - chr3R 24078411 intron 4EHP - chr3R_4_24075001 chr3R_24075001 RAL-338 864 chr3R 24182736 24182766 chr3R 24182819 24182850 6 83 2.5 4.0 3.2 1.4 114 chr3R 24182736 intron CG13606 + chr3R 24182793 intron CG13606 + chr3R 24182850 intron CG13606 + chr3R_6_24180001 chr3R_24180001 RAL-338 865 chr3R 24199739 24199773 chr3R 24199818 24199853 8 80 0.0 1.0 0.5 5.3 114 chr3R 24199739 intron twin - chr3R 24199796 intron twin - chr3R 24199853 intron twin - chr3R_8_24195001 chr3R_24195001 RAL-338 866 chr3R 24458109 24458133 chr3R 24458580 24458603 7 470 2.5 6.0 4.2 1.3 494 chr3R 24458109 intergenic not near genes chr3R 24458356 intergenic not near genes chr3R 24458603 intergenic not near genes chr3R_7_24455001 chr3R_24455001 RAL-338 867 chr3R 24493287 24493310 chr3R 24493515 24493537 BS 7 228 1.0 2.5 1.8 2.5 250 chr3R 24493287 intergenic not near genes chr3R 24493412 intergenic not near genes chr3R 24493537 intergenic not near genes chr3R_7_24490001 chr3R_24490001 RAL-338 868 chr3R 24730091 24730118 chr3R 24732469 24732496 Doc 6 2377 2.5 1.0 1.8 2.1 2405 chr3R 24730091 intron tok + chr3R 24731294 intron tok + chr3R 24732496 intron tok + chr3R_6_24730001 chr3R_24730001 RAL-338 869 chr3R 24785082 24785110 chr3R 24785155 24785186 7 75 2.5 3.0 2.8 1.8 104 chr3R 24785082 3` UTR CG5805 - chr3R 24785134 3` UTR CG5805 - chr3R 24785186 3` UTR CG5805 - chr3R_7_24785001 chr3R_24785001 RAL-338 870 chr3R 24795306 24795344 chr3R 24795508 24795546 7 201 1.0 1.0 1.0 3.5 240 chr3R 24795306 intron Ets96B + chr3R 24795426 intron Ets96B + chr3R 24795546 intron Ets96B + chr3R_7_24795001 chr3R_24795001 RAL-338 871 chr3R 25004902 25004915 chr3R 25004985 25004998 6 83 3.0 4.0 3.5 1.3 96 chr3R 25004902 intron tnc + chr3R 25004950 intron tnc + chr3R 25004998 intron tnc + chr3R_6_25000001 chr3R_25000001 RAL-338 872 chr3R 25629451 25629470 chr3R 25629534 25629552 9 83 3.0 2.0 2.5 2.6 101 chr3R 25629451 intergenic not near genes chr3R 25629502 intergenic not near genes chr3R 25629552 intergenic not near genes chr3R_9_25625001 chr3R_25625001 RAL-338 873 chr3R 25669064 25669094 chr3R 25669158 25669187 4 94 1.5 2.0 1.8 1.4 123 chr3R 25669064 intron Lgr3 + chr3R 25669126 intron Lgr3 + chr3R 25669187 intron Lgr3 + chr3R_4_25665001 chr3R_25665001 RAL-338 874 chr3R 25689126 25689157 chr3R 25689234 25689263 8 107 1.0 1.5 1.2 3.6 137 chr3R 25689126 intergenic not near genes chr3R 25689194 intergenic not near genes chr3R 25689263 intergenic not near genes chr3R_8_25685001 chr3R_25685001 RAL-338 875 chr3R 25738633 25738662 chr3R 25738721 25738750 4 88 2.5 0.5 1.5 1.6 117 chr3R 25738633 intron LpR2 - chr3R 25738692 intron LpR2 - chr3R 25738750 intron LpR2 - chr3R_4_25735001 chr3R_25735001 RAL-338 876 chr3R 25832690 25832720 chr3R 25841872 25841899 roo 6 9181 2.5 6.0 4.2 1.2 9209 chr3R 25832690 exon alpha4GT2 + chr3R 25837294 intron alpha4GT2 + chr3R 25841899 exon alpha4GT2 + chr3R_6_25835001 chr3R_25835001 RAL-338 877 chr3R 25900880 25900899 chr3R 25903600 25903623 5 2720 22.0 16.5 19.2 0.2 2743 chr3R 25900880 exon CG31091 + chr3R 25902252 intergenic CG31091 +,CG31089 + chr3R 25903623 exon,intron CG31089 +,CR43259 - chr3R_5_25900001 chr3R_25900001 RAL-338 878 chr3R 26122463 26122479 chr3R 26122539 26122555 9 75 5.5 2.5 4.0 1.8 92 chr3R 26122463 intron CG31324 + chr3R 26122509 intron CG31324 + chr3R 26122555 intron CG31324 + chr3R_9_26120001 chr3R_26120001 RAL-338 879 chr3R 26166177 26166202 chr3R 26166263 26166288 7 86 0.5 1.0 0.8 3.9 111 chr3R 26166177 intergenic not near genes chr3R 26166232 intergenic not near genes chr3R 26166288 intergenic not near genes chr3R_7_26165001 chr3R_26165001 RAL-338 880 chr3R 26339228 26339261 chr3R 26339322 26339356 6 94 1.0 1.0 1.0 3.0 128 chr3R 26339228 intron CG33970 + chr3R 26339292 intron CG33970 + chr3R 26339356 intron CG33970 + chr3R_6_26335001 chr3R_26335001 RAL-338 881 chr3R 26558327 26558359 chr3R 26565640 26565644 Stalker4 8 7307 2.0 5.0 3.5 1.8 7317 chr3R 26558327 intron scrib + chr3R 26561986 intron scrib + chr3R 26565644 intron scrib + chr3R_8_26560001 chr3R_26560001 RAL-338 882 chr3R 21907534 21907536 chr3R 26659336 26659336 4 4751801 17.0 2.5 9.8 0.4 4751802 chr3R 21907534 intergenic CG6678 + chr3R 24283435 intergenic CR45662 - chr3R 26659336 intron beat-VII - chr3R_4_24280001 chr3R_24280001 RAL-338 883 chr3R 26659948 26659969 chr3R 26660049 26660070 5 101 1.0 0.0 0.5 3.3 122 chr3R 26659948 intron beat-VII - chr3R 26660009 intron beat-VII - chr3R 26660070 intron beat-VII - chr3R_5_26660001 chr3R_26660001 RAL-338 884 chr3R 26685856 26685886 chr3R 26686035 26686046 7 176 4.0 1.5 2.8 1.8 190 chr3R 26685856 intergenic not near genes chr3R 26685951 intergenic not near genes chr3R 26686046 intergenic not near genes chr3R_7_26685001 chr3R_26685001 RAL-338 885 chr3R 26806134 26806169 chr3R 26806238 26806272 13 103 3.0 4.5 3.8 2.7 138 chr3R 26806134 intron Tl + chr3R 26806203 intron Tl + chr3R 26806272 intron Tl + chr3R_13_26805001 chr3R_26805001 RAL-338 886 chr3R 26845585 26845606 chr3R 26845665 26845686 4 80 5.5 3.5 4.5 0.7 101 chr3R 26845585 intron Lerp - chr3R 26845636 intron Lerp - chr3R 26845686 intron Lerp - chr3R_4_26845001 chr3R_26845001 RAL-338 887 chr3R 26908044 26908063 chr3R 26908132 26908160 5 95 1.0 3.0 2.0 1.7 116 chr3R 26908044 intron T48 + chr3R 26908102 intron T48 + chr3R 26908160 intron T48 + chr3R_5_26905001 chr3R_26905001 RAL-338 888 chr3R 27019521 27019539 chr3R 27019611 27019631 7 94 2.5 1.5 2.0 2.3 110 chr3R 27019521 intron,exon RYa-R +,CG17191 - chr3R 27019576 intron,exon RYa-R +,CG17191 - chr3R 27019631 intron,exon RYa-R +,CG17191 - chr3R_7_27015001 chr3R_27015001 RAL-338 889 chr3R 27043334 27043339 chr3R 27043407 27043429 4 86 1.0 3.0 2.0 1.3 95 chr3R 27043334 intron RYa-R + chr3R 27043382 intron RYa-R + chr3R 27043429 intron RYa-R + chr3R_4_27040001 chr3R_27040001 RAL-338 890 chr3R 27077100 27077123 chr3R 27077178 27077203 8 80 4.0 1.5 2.8 2.1 103 chr3R 27077100 intron CG14257 + chr3R 27077152 intron CG14257 + chr3R 27077203 intron CG14257 + chr3R_8_27075001 chr3R_27075001 RAL-338 891 chr3R 27101246 27101272 chr3R 27101323 27101338 4 75 1.5 5.5 3.5 0.9 92 chr3R 27101246 intergenic CG17189 + chr3R 27101292 intergenic CG17189 + chr3R 27101338 intergenic CG17189 + chr3R_4_27100001 chr3R_27100001 RAL-338 892 chr3R 27140514 27140548 chr3R 27148124 27148158 412 12 7610 1.5 2.0 1.8 4.3 7644 chr3R 27140514 intron CG6051 - chr3R 27144336 intron CG6051 - chr3R 27148158 intron CG6051 - chr3R_12_27140001 chr3R_27140001 RAL-338 893 chr3R 27275849 27275862 chr3R 27275932 27275941 5 83 1.5 1.0 1.2 2.3 92 chr3R 27275849 intron CG5938 + chr3R 27275895 intron CG5938 + chr3R 27275941 intron CG5938 + chr3R_5_27275001 chr3R_27275001 RAL-338 894 chr3R 27326272 27326299 chr3R 27326357 27326387 9 88 3.5 1.5 2.5 2.6 115 chr3R 27326272 intergenic not near genes chr3R 27326330 intergenic not near genes chr3R 27326387 intergenic not near genes chr3R_9_27325001 chr3R_27325001 RAL-338 895 chr3R 27342792 27342825 chr3R 27351373 27351400 Tirant 5 8580 3.5 1.0 2.2 1.6 8608 chr3R 27342792 intron CG42534 + chr3R 27347096 intron CG42534 + chr3R 27351400 intron CG42534 + chr3R_5_27345001 chr3R_27345001 RAL-338 896 chr3R 27385687 27385720 chr3R 27385958 27385990 8 268 3.5 1.5 2.5 2.3 303 chr3R 27385687 intron side - chr3R 27385838 intron side - chr3R 27385990 intron side - chr3R_8_27385001 chr3R_27385001 RAL-338 897 chr3R 27417035 27417063 chr3R 27417125 27417154 8 89 1.5 0.5 1.0 4.0 119 chr3R 27417035 intron side - chr3R 27417094 intron side - chr3R 27417154 intron side - chr3R_8_27415001 chr3R_27415001 RAL-338 898 chr3R 27449168 27449196 chr3R 27449245 27449275 6 77 1.0 2.5 1.8 2.1 107 chr3R 27449168 intergenic not near genes chr3R 27449222 intergenic not near genes chr3R 27449275 intergenic not near genes chr3R_6_27445001 chr3R_27445001 RAL-338 899 chr3R 27470883 27470916 chr3R 27470994 27471029 8 112 2.0 0.5 1.2 3.6 146 chr3R 27470883 intergenic not near genes chr3R 27470956 intergenic not near genes chr3R 27471029 intergenic not near genes chr3R_8_27470001 chr3R_27470001 RAL-338 900 chr3R 27619722 27619726 chr3R 27619836 27619840 4 114 1.0 5.0 3.0 1.0 118 chr3R 27619722 intron Tusp + chr3R 27619781 intron Tusp + chr3R 27619840 intron Tusp + chr3R_4_27615001 chr3R_27615001 RAL-338 901 chr3R 27688063 27688099 chr3R 27688150 27688179 6 86 2.5 1.0 1.8 2.1 116 chr3R 27688063 5` UTR,intron CG31055 -,CG12880 + chr3R 27688121 5` UTR,intron CG31055 -,CG12880 + chr3R 27688179 intron CG12880 + chr3R_6_27685001 chr3R_27685001 RAL-338 902 chr3R 27779272 27779287 chr3R 27779349 27779363 4 77 5.5 6.5 6.0 0.6 91 chr3R 27779272 exon CG34353 - chr3R 27779318 intron CG34353 - chr3R 27779363 intron CG34353 - chr3R_4_27775001 chr3R_27775001 RAL-338 903 chr3R 27800692 27800718 chr3R 27800787 27800811 8 92 3.5 3.5 3.5 1.8 119 chr3R 27800692 intron CG34353 - chr3R 27800752 intron CG34353 - chr3R 27800811 intron CG34353 - chr3R_8_27800001 chr3R_27800001 RAL-338 904 chr3R 27813821 27813843 chr3R 27813925 27813946 4 104 2.5 0.5 1.5 1.6 125 chr3R 27813821 intron CG34353 - chr3R 27813884 intron CG34353 - chr3R 27813946 intron CG34353 - chr3R_4_27810001 chr3R_27810001 RAL-338 905 chr3R 27875702 27875731 chr3R 27882756 27882786 297 5 7055 1.5 3.0 2.2 1.6 7084 chr3R 27875702 intron CG34353 - chr3R 27879244 intron CG34353 - chr3R 27882786 intron CG34353 - chr3R_5_27875001 chr3R_27875001 RAL-338 906 chr3R 27981948 27981976 chr3R 27982051 27982079 6 102 1.0 1.5 1.2 2.7 131 chr3R 27981948 intron betaTub97EF - chr3R 27982014 intron betaTub97EF - chr3R 27982079 intron betaTub97EF - chr3R_6_27980001 chr3R_27980001 RAL-338 907 chr3R 27985944 27985960 chr3R 27986086 27986102 4 142 1.5 3.0 2.2 1.2 158 chr3R 27985944 intron betaTub97EF - chr3R 27986023 intron betaTub97EF - chr3R 27986102 intron betaTub97EF - chr3R_4_27985001 chr3R_27985001 RAL-338 908 chr3R 28017956 28017976 chr3R 28018047 28018067 5 91 2.0 5.0 3.5 1.1 111 chr3R 28017956 intergenic not near genes chr3R 28018012 intergenic not near genes chr3R 28018067 intergenic not near genes chr3R_5_28015001 chr3R_28015001 RAL-338 909 chr3R 28115513 28115545 chr3R 28115588 28115621 14 74 3.0 1.5 2.2 4.4 108 chr3R 28115513 intergenic not near genes chr3R 28115567 intergenic not near genes chr3R 28115621 intergenic not near genes chr3R_14_28115001 chr3R_28115001 RAL-338 910 chr3R 28173670 28173699 chr3R 28181099 28181129 mdg1 4 7430 0.5 0.5 0.5 2.7 7459 chr3R 28173670 intron CG34354 + chr3R 28177400 intron CG34354 + chr3R 28181129 intron CG34354 + chr3R_4_28175001 chr3R_28175001 RAL-338 911 chr3R 28253350 28253369 chr3R 28255853 28255879 jockey 7 2509 3.0 2.5 2.8 1.8 2529 chr3R 28253350 intergenic not near genes chr3R 28254614 intergenic not near genes chr3R 28255879 intergenic not near genes chr3R_7_28250001 chr3R_28250001 RAL-338 912 chr3R 28262676 28262685 chr3R 28262752 28262759 5 75 3.5 5.0 4.2 1.0 83 chr3R 28262676 intergenic CG43125 - chr3R 28262718 intergenic CG43125 - chr3R 28262759 exon CG43125 - chr3R_5_28260001 chr3R_28260001 RAL-338 913 chr3R 28275169 28275191 chr3R 28275250 28275272 7 79 2.0 0.5 1.2 3.2 103 chr3R 28275169 intergenic not near genes chr3R 28275220 intergenic not near genes chr3R 28275272 intergenic not near genes chr3R_7_28275001 chr3R_28275001 RAL-338 914 chr3R 28393712 28393724 chr3R 28393812 28393824 4 100 1.0 1.0 1.0 2.0 112 chr3R 28393712 intergenic not near genes chr3R 28393768 intergenic not near genes chr3R 28393824 intergenic not near genes chr3R_4_28390001 chr3R_28390001 RAL-338 915 chr3R 28407708 28407739 chr3R 28407794 28407825 6 85 1.0 5.5 3.2 1.4 117 chr3R 28407708 intergenic not near genes chr3R 28407766 intergenic not near genes chr3R 28407825 intergenic not near genes chr3R_6_28405001 chr3R_28405001 RAL-338 916 chr3R 28730460 28730487 chr3R 28730541 28730578 4 84 2.0 0.0 1.0 2.0 118 chr3R 28730460 intron htt + chr3R 28730519 intron htt + chr3R 28730578 intron htt + chr3R_4_28730001 chr3R_28730001 RAL-338 917 chr3R 28744526 28744551 chr3R 28744671 28744696 6 144 3.0 3.0 3.0 1.5 170 chr3R 28744526 5` UTR AstA-R2 - chr3R 28744611 5` UTR AstA-R2 - chr3R 28744696 5` UTR AstA-R2 - chr3R_6_28740001 chr3R_28740001 RAL-338 918 chr3R 28792875 28792893 chr3R 28797970 28797988 jockey 4 5095 3.0 4.5 3.8 0.8 5113 chr3R 28792875 intergenic not near genes chr3R 28795432 intergenic not near genes chr3R 28797988 intergenic not near genes chr3R_4_28795001 chr3R_28795001 RAL-338 919 chr3R 28802041 28802069 chr3R 28802121 28802133 7 77 4.5 0.5 2.5 2.0 92 chr3R 28802041 intergenic not near genes chr3R 28802087 intergenic not near genes chr3R 28802133 intergenic not near genes chr3R_7_28800001 chr3R_28800001 RAL-338 920 chr3R 21907534 21907536 chr3R 28831798 28831801 22 6924266 17.0 15.0 16.0 1.3 6924267 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831801 intron WASp - chr3R_22_25365001 chr3R_25365001 RAL-338 921 chr3R 21907534 21907536 chr3R 28831802 28831802 37 6924267 17.0 14.5 15.8 2.2 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_37_25365001 chr3R_25365001 RAL-338 922 chr3R 21907534 21907536 chr3R 29013340 29013340 28 7105805 17.0 11.5 14.2 1.8 7105806 chr3R 21907534 intergenic CG6678 + chr3R 25460437 intron Fur1 - chr3R 29013340 intron wat - chr3R_28_25460001 chr3R_25460001 RAL-338 923 chr3R 29332287 29332309 chr3R 29332364 29332386 8 77 0.5 1.0 0.8 4.4 99 chr3R 29332287 intergenic not near genes chr3R 29332336 intergenic not near genes chr3R 29332386 intergenic not near genes chr3R_8_29330001 chr3R_29330001 RAL-338 924 chr3R 29334230 29334240 chr3R 29334308 29334317 4 78 3.5 4.5 4.0 0.8 87 chr3R 29334230 intergenic not near genes chr3R 29334274 intergenic not near genes chr3R 29334317 intergenic not near genes chr3R_4_29330001 chr3R_29330001 RAL-338 925 chr3R 29406618 29406640 chr3R 29407904 29407926 jockey 10 1282 2.5 4.0 3.2 2.4 1308 chr3R 29406618 intron Ptp99A + chr3R 29407272 intron Ptp99A + chr3R 29407926 intron Ptp99A + chr3R_10_29405001 chr3R_29405001 RAL-338 926 chr3R 29429797 29429806 chr3R 29429868 29429883 4 73 3.0 1.5 2.2 1.2 86 chr3R 29429797 intron Ptp99A + chr3R 29429840 intron Ptp99A + chr3R 29429883 intron Ptp99A + chr3R_4_29425001 chr3R_29425001 RAL-338 927 chr3R 29472016 29472036 chr3R 29472108 29472128 6 91 2.5 3.0 2.8 1.6 112 chr3R 29472016 intron Ptp99A + chr3R 29472072 intron Ptp99A + chr3R 29472128 intron Ptp99A + chr3R_6_29470001 chr3R_29470001 RAL-338 928 chr3R 29505893 29505925 chr3R 29505970 29506000 5 76 0.0 1.0 0.5 3.3 107 chr3R 29505893 intergenic not near genes chr3R 29505946 intergenic not near genes chr3R 29506000 intergenic not near genes chr3R_5_29505001 chr3R_29505001 RAL-338 929 chr3R 29718171 29718195 chr3R 29718308 29718332 5 137 2.5 3.0 2.8 1.3 161 chr3R 29718171 intergenic CG15506 + chr3R 29718252 intergenic CG15506 + chr3R 29718332 intergenic CG15506 + chr3R_5_29715001 chr3R_29715001 RAL-338 930 chr3R 29738264 29738301 chr3R 29739731 29739761 hobo 12 1466 2.5 2.5 2.5 3.4 1497 chr3R 29738264 intergenic CG1969 +,CG7598 + chr3R 29739012 intron CG1969 + chr3R 29739761 5` UTR CG1969 + chr3R_12_29735001 chr3R_29735001 RAL-338 931 chr3R 29790661 29790674 chr3R 29790737 29790744 4 74 2.5 5.0 3.8 0.8 83 chr3R 29790661 intron kay + chr3R 29790702 intron kay + chr3R 29790744 intron kay + chr3R_4_29790001 chr3R_29790001 RAL-338 932 chr3R 29831815 29831842 chr3R 29831899 29831927 8 85 0.5 3.0 1.8 2.9 112 chr3R 29831815 exon Atg16 - chr3R 29831871 intron Atg16 - chr3R 29831927 exon Atg16 - chr3R_8_29830001 chr3R_29830001 RAL-338 933 chr3R 29882031 29882049 chr3R 29891179 29891206 roo 5 9155 2.0 2.5 2.2 1.6 9175 chr3R 29882031 intron CG31038 + chr3R 29886618 intron CG31038 + chr3R 29891206 intron CG31038 + chr3R_5_29885001 chr3R_29885001 RAL-338 934 chr3R 29903344 29903372 chr3R 29906884 29906908 5 3536 22.0 13.0 17.5 0.3 3564 chr3R 29903344 exon CG15517 - chr3R 29905126 intergenic CG15515 + chr3R 29906908 intergenic CG15515 + chr3R_5_29905001 chr3R_29905001 RAL-338 935 chr3R 29950575 29950599 chr3R 29950651 29950676 8 74 3.0 0.5 1.8 2.9 101 chr3R 29950575 intergenic TkR99D - chr3R 29950626 intergenic TkR99D - chr3R 29950676 intergenic TkR99D - chr3R_8_29950001 chr3R_29950001 RAL-338 936 chr3R 29963477 29963509 chr3R 29963579 29963611 6 102 0.0 2.5 1.2 2.7 134 chr3R 29963477 intron TkR99D - chr3R 29963544 intron TkR99D - chr3R 29963611 intron TkR99D - chr3R_6_29960001 chr3R_29960001 RAL-338 937 chr3R 30013682 30013699 chr3R 30013765 30013782 4 83 2.0 3.0 2.5 1.1 100 chr3R 30013682 intron CG7920 - chr3R 30013732 intron CG7920 - chr3R 30013782 intron CG7920 - chr3R_4_30010001 chr3R_30010001 RAL-338 938 chr3R 30084862 30084884 chr3R 30086329 30086351 hobo 8 1467 1.0 4.5 2.8 2.1 1489 chr3R 30084862 intron sima + chr3R 30085606 intron sima + chr3R 30086351 intron sima + chr3R_8_30085001 chr3R_30085001 RAL-338 939 chr3R 30170760 30170790 chr3R 30170847 30170877 11 87 2.0 3.0 2.5 3.1 117 chr3R 30170760 intron CG31028 - chr3R 30170818 intron CG31028 - chr3R 30170877 intron CG31028 - chr3R_11_30170001 chr3R_30170001 RAL-338 940 chr3R 30177767 30177775 chr3R 30177877 30177892 4 115 0.5 4.0 2.2 1.2 125 chr3R 30177767 intergenic CG1983 -,CG15530 + chr3R 30177830 intergenic CG15530 +,CG1983 - chr3R 30177892 5` UTR CG15530 + chr3R_4_30175001 chr3R_30175001 RAL-338 941 chr3R 30268244 30268437 chr3R 30268323 30268518 9 79 3.5 1.0 2.2 2.8 274 chr3R 30268244 intergenic not near genes chr3R 30268381 intergenic not near genes chr3R 30268518 intergenic not near genes chr3R_9_30265001 chr3R_30265001 RAL-338 942 chr3R 30307117 30307154 chr3R 30307198 30307235 10 80 3.0 4.0 3.5 2.2 118 chr3R 30307117 intron hdc + chr3R 30307176 intron hdc + chr3R 30307235 intron hdc + chr3R_10_30305001 chr3R_30305001 RAL-338 943 chr3R 30332033 30332054 chr3R 30332111 30332133 10 76 2.5 3.0 2.8 2.6 100 chr3R 30332033 intron hdc + chr3R 30332083 intron hdc + chr3R 30332133 intron hdc + chr3R_10_30330001 chr3R_30330001 RAL-338 944 chr3R 30341923 30341940 chr3R 30342030 30342048 7 108 5.0 1.5 3.2 1.7 125 chr3R 30341923 intron hdc + chr3R 30341986 intron hdc + chr3R 30342048 intron hdc + chr3R_7_30340001 chr3R_30340001 RAL-338 945 chr3R 30396218 30396238 chr3R 30404484 30404504 roo 8 8266 2.5 5.0 3.8 1.7 8286 chr3R 30396218 intergenic not near genes chr3R 30400361 intergenic not near genes chr3R 30404504 5` UTR CR45570 + chr3R_8_30400001 chr3R_30400001 RAL-338 946 chr3R 30453777 30453800 chr3R 30453869 30453888 8 91 3.5 0.0 1.8 2.9 111 chr3R 30453777 intron aralar1 - chr3R 30453832 intron aralar1 - chr3R 30453888 intron aralar1 - chr3R_8_30450001 chr3R_30450001 RAL-338 947 chr3R 30539713 30539739 chr3R 30540358 30540383 4 645 0.0 1.5 0.8 2.2 670 chr3R 30539713 intron tmod + chr3R 30540048 intron tmod + chr3R 30540383 intron tmod + chr3R_4_30540001 chr3R_30540001 RAL-338 948 chr3R 30627605 30627635 chr3R 30627684 30627715 10 75 3.0 5.0 4.0 2.0 110 chr3R 30627605 exon CG2267 - chr3R 30627660 exon CG2267 - chr3R 30627715 exon CG2267 - chr3R_10_30625001 chr3R_30625001 RAL-338 949 chr3R 30679533 30679548 chr3R 30687002 30687017 blood 5 7469 4.0 7.5 5.8 0.7 7484 chr3R 30679533 intergenic not near genes chr3R 30683275 intergenic not near genes chr3R 30687017 intergenic not near genes chr3R_5_30680001 chr3R_30680001 RAL-338 950 chr3R 30690161 30690187 chr3R 30690245 30690257 4 80 5.5 2.5 4.0 0.8 96 chr3R 30690161 intergenic Spn100A + chr3R 30690209 intergenic Spn100A + chr3R 30690257 intergenic Spn100A + chr3R_4_30690001 chr3R_30690001 RAL-338 951 chr3R 30798313 30798336 chr3R 30798395 30798418 8 82 1.5 0.0 0.8 4.4 105 chr3R 30798313 intron wts - chr3R 30798366 intron wts - chr3R 30798418 intron wts - chr3R_8_30795001 chr3R_30795001 RAL-338 952 chr3R 30818817 30818839 chr3R 30820382 30820404 1360 5 1565 1.0 1.5 1.2 2.3 1587 chr3R 30818817 intron cindr + chr3R 30819610 intron cindr + chr3R 30820404 intron cindr + chr3R_5_30815001 chr3R_30815001 RAL-338 953 chr3R 31084907 31084928 chr3R 31084982 31085004 8 76 1.0 1.5 1.2 3.6 97 chr3R 31084907 intergenic not near genes chr3R 31084956 intergenic not near genes chr3R 31085004 intergenic not near genes chr3R_8_31080001 chr3R_31080001 RAL-338 954 chr3R 31295359 31295373 chr3R 31295444 31295459 7 85 2.0 2.0 2.0 2.3 100 chr3R 31295359 intergenic not near genes chr3R 31295409 intergenic not near genes chr3R 31295459 intergenic not near genes chr3R_7_31295001 chr3R_31295001 RAL-338 955 chr3R 31413088 31413121 chr3R 31418288 31418321 copia 12 5199 3.0 0.5 1.8 4.3 5233 chr3R 31413088 intron Gprk2 + chr3R 31415704 intron Gprk2 + chr3R 31418321 intron Gprk2 + chr3R_12_31415001 chr3R_31415001 RAL-338 956 chr3R 31450775 31450777 chr3R 31450945 31450948 4 169 18.0 20.5 19.2 0.2 173 chr3R 31450775 intron Gprk2 + chr3R 31450862 intron Gprk2 + chr3R 31450948 intron Gprk2 + chr3R_4_31450001 chr3R_31450001 RAL-338 957 chr3R 31450768 31450791 chr3R 31450951 31450957 4 174 21.0 19.0 20.0 0.2 189 chr3R 31450768 intron Gprk2 + chr3R 31450862 intron Gprk2 + chr3R 31450957 intron Gprk2 + chr3R_4_31450001 chr3R_31450001 RAL-338 958 chr3R 31555939 31555955 chr3R 31556142 31556157 6 203 6.5 2.0 4.2 1.2 218 chr3R 31555939 intron nyo + chr3R 31556048 intron nyo + chr3R 31556157 intron nyo + chr3R_6_31555001 chr3R_31555001 RAL-338 959 chr3R 31691535 31691560 chr3R 31696300 31696326 Doc 6 4763 3.0 6.5 4.8 1.0 4791 chr3R 31691535 intergenic not near genes chr3R 31693930 intergenic not near genes chr3R 31696326 intergenic not near genes chr3R_6_31690001 chr3R_31690001 RAL-338 960 chr3R 31876180 31876202 chr3R 31876257 31876273 6 74 3.0 2.5 2.8 1.6 93 chr3R 31876180 intron heph - chr3R 31876226 intron heph - chr3R 31876273 intron heph - chr3R_6_31875001 chr3R_31875001 RAL-338 961 chr3R 31877796 31877819 chr3R 31877872 31877895 9 76 3.0 2.5 2.8 2.4 99 chr3R 31877796 intron heph - chr3R 31877846 intron heph - chr3R 31877895 intron heph - chr3R_9_31875001 chr3R_31875001 RAL-338 962 chr3R 31962077 31962095 chr3R 31962383 31962401 8 306 3.0 0.5 1.8 2.9 324 chr3R 31962077 intron heph - chr3R 31962239 intron heph - chr3R 31962401 intron heph - chr3R_8_31960001 chr3R_31960001 RAL-338 963 chr3R 31997994 31998022 chr3R 32005464 32005492 blood 8 7469 2.0 1.5 1.8 2.9 7498 chr3R 31997994 intron heph - chr3R 32001743 intron heph - chr3R 32005492 intron heph - chr3R_8_32000001 chr3R_32000001 RAL-338 964 chr4 671612 671625 chr4 680193 680208 Tirant 5 8582 6.5 3.5 5.0 0.8 8596 chr4 671612 intron CG11360 + chr4 675910 intron CG11360 + chr4 680208 intron CG11360 + chr4_5_675001 chr4_675001 RAL-338 965 chrX 551422 551454 chrX 558984 559016 412 7 7561 4.0 2.0 3.0 1.8 7594 chrX 551422 intron Appl + chrX 555219 intron Appl + chrX 559016 intron Appl + chrX_7_555001 chrX_555001 RAL-338 966 chrX 778137 778160 chrX 778227 778244 8 89 1.5 0.5 1.0 4.0 107 chrX 778137 intron fz3 + chrX 778190 intron fz3 + chrX 778244 intron fz3 + chrX_8_775001 chrX_775001 RAL-338 967 chrX 806785 806817 chrX 806880 806913 8 94 2.0 1.0 1.5 3.2 128 chrX 806785 intron Sec22 + chrX 806849 intron Sec22 + chrX 806913 intron Sec22 + chrX_8_805001 chrX_805001 RAL-338 968 chrX 826386 826411 chrX 826546 826565 9 159 2.0 2.5 2.2 2.8 179 chrX 826386 intron CG43867 - chrX 826476 intron CG43867 - chrX 826565 intron CG43867 - chrX_9_825001 chrX_825001 RAL-338 969 chrX 918378 918404 chrX 918462 918488 9 82 1.0 3.5 2.2 2.8 110 chrX 918378 intron CG43867 - chrX 918433 intron CG43867 - chrX 918488 intron CG43867 - chrX_9_915001 chrX_915001 RAL-338 970 chrX 1253740 1253760 chrX 1253821 1253842 6 82 2.5 2.5 2.5 1.7 102 chrX 1253740 intron Atf3 - chrX 1253791 intron Atf3 - chrX 1253842 intron Atf3 - chrX_6_1250001 chrX_1250001 RAL-338 971 chrX 1560655 1560686 chrX 1560747 1560759 4 83 2.5 1.5 2.0 1.3 104 chrX 1560655 intron Mur2B - chrX 1560707 intron Mur2B - chrX 1560759 intron Mur2B - chrX_4_1560001 chrX_1560001 RAL-338 972 chrX 1627974 1627999 chrX 1635441 1635466 gtwin 6 7467 5.0 2.0 3.5 1.3 7492 chrX 1627974 intron,intron Mur2B -,br + chrX 1631720 intron,intron Mur2B -,br + chrX 1635466 intron,intron Mur2B -,br + chrX_6_1630001 chrX_1630001 RAL-338 973 chrX 1674862 1674873 chrX 1674938 1674949 6 74 2.5 0.0 1.2 2.7 87 chrX 1674862 3` UTR CG32809 - chrX 1674906 3` UTR CG32809 - chrX 1674949 3` UTR CG32809 - chrX_6_1670001 chrX_1670001 RAL-338 974 chrX 1845739 1845757 chrX 1845839 1845857 8 100 1.0 1.5 1.2 3.6 118 chrX 1845739 intron CG42666 + chrX 1845798 intron CG42666 + chrX 1845857 intron CG42666 + chrX_8_1845001 chrX_1845001 RAL-338 975 chrX 1954887 1954916 chrX 1962826 1962830 Stalker2 5 7934 1.0 1.5 1.2 2.3 7943 chrX 1954887 intron Hr4 + chrX 1958858 intron Hr4 + chrX 1962830 intron Hr4 + chrX_5_1955001 chrX_1955001 RAL-338 976 chrX 2146652 2146683 chrX 2146744 2146776 8 91 2.0 2.5 2.2 2.5 124 chrX 2146652 intron Pgd + chrX 2146714 intron Pgd + chrX 2146776 intron Pgd + chrX_8_2145001 chrX_2145001 RAL-338 977 chrX 2535820 2535855 chrX 2535896 2535926 6 73 1.5 0.5 1.0 3.0 106 chrX 2535820 intron trol - chrX 2535873 intron trol - chrX 2535926 intron trol - chrX_6_2535001 chrX_2535001 RAL-338 978 chrX 2568206 2568227 chrX 2568441 2568475 5 245 3.0 4.0 3.5 1.1 269 chrX 2568206 intron Pdfr + chrX 2568340 intron Pdfr + chrX 2568475 intron Pdfr + chrX_5_2565001 chrX_2565001 RAL-338 979 chrX 2578814 2578846 chrX 2578906 2578938 9 90 0.5 1.5 1.0 4.5 124 chrX 2578814 intergenic Pdfr +,Vha36-3 - chrX 2578876 intergenic Vha36-3 -,Pdfr + chrX 2578938 intergenic Vha36-3 -,Pdfr + chrX_9_2575001 chrX_2575001 RAL-338 980 chrX 2610387 2610405 chrX 2617504 2617515 HMS-Beagle 4 7115 1.5 2.5 2.0 1.3 7128 chrX 2610387 intergenic CG8636 - chrX 2613951 intergenic not near genes chrX 2617515 intergenic Tsp3A - chrX_4_2610001 chrX_2610001 RAL-338 981 chrX 2932231 2932253 chrX 2932313 2932334 6 82 3.0 0.5 1.8 2.1 103 chrX 2932231 intron,exon kirre +,CG32793 + chrX 2932282 intron,exon kirre +,CG32793 + chrX 2932334 intron,exon kirre +,CG32793 + chrX_6_2930001 chrX_2930001 RAL-338 982 chrX 3031170 3031189 chrX 3031244 3031272 5 81 1.0 2.0 1.5 2.0 102 chrX 3031170 intron kirre + chrX 3031221 intron kirre + chrX 3031272 intron kirre + chrX_5_3030001 chrX_3030001 RAL-338 983 chrX 3271691 3271717 chrX 3271766 3271794 6 76 0.5 1.0 0.8 3.3 103 chrX 3271691 intron dnc + chrX 3271742 intron dnc + chrX 3271794 intron dnc + chrX_6_3270001 chrX_3270001 RAL-338 984 chrX 3306066 3306357 chrX 3306176 3306438 6 89 1.5 5.5 3.5 1.3 372 chrX 3306066 intron dnc + chrX 3306252 intron dnc + chrX 3306438 intron dnc + chrX_6_3305001 chrX_3305001 RAL-338 985 chrX 3456273 3456292 chrX 3456621 3456639 5 347 2.5 2.5 2.5 1.4 366 chrX 3456273 intron CR44999 + chrX 3456456 intron CR44999 + chrX 3456639 intron CR44999 + chrX_5_3455001 chrX_3455001 RAL-338 986 chrX 3595022 3595043 chrX 3595089 3595120 4 75 0.0 2.0 1.0 2.0 98 chrX 3595022 intron AstA-R1 + chrX 3595071 intron AstA-R1 + chrX 3595120 intron AstA-R1 + chrX_4_3595001 chrX_3595001 RAL-338 987 chrX 3597548 3597581 chrX 3619716 3619748 roo 11 22166 1.5 0.0 0.8 6.1 22200 chrX 3597548 intron AstA-R1 + chrX 3608648 intron AstA-R1 + chrX 3619748 intron AstA-R1 + chrX_11_3605001 chrX_3605001 RAL-338 988 chrX 3881272 3881305 chrX 3881411 3881443 5 139 2.0 0.5 1.2 2.3 171 chrX 3881272 intron VhaAC39-1 + chrX 3881358 intron VhaAC39-1 + chrX 3881443 intron VhaAC39-1 + chrX_5_3880001 chrX_3880001 RAL-338 989 chrX 3994807 3994823 chrX 3994960 3994976 5 153 3.0 6.5 4.8 0.9 169 chrX 3994807 intergenic not near genes chrX 3994892 intergenic not near genes chrX 3994976 intergenic not near genes chrX_5_3990001 chrX_3990001 RAL-338 990 chrX 4029532 4029542 chrX 4029722 4029730 5 189 5.0 3.5 4.2 1.0 198 chrX 4029532 intergenic not near genes chrX 4029631 intergenic not near genes chrX 4029730 intergenic not near genes chrX_5_4025001 chrX_4025001 RAL-338 991 chrX 4029543 4029550 chrX 4029719 4029740 4 184 5.0 3.5 4.2 0.8 197 chrX 4029543 intergenic not near genes chrX 4029642 intergenic not near genes chrX 4029740 intergenic not near genes chrX_4_4025001 chrX_4025001 RAL-338 992 chrX 4067987 4067988 chrX 10754861 10754864 4 6686874 9.0 12.0 10.5 0.3 6686877 chrX 4067987 intergenic not near genes chrX 7411426 3` UTR CG42246 - chrX 10754864 intron Rph - chrX_4_7410001 chrX_7410001 RAL-338 993 chrX 4101886 4101896 chrX 4101966 4101976 4 80 0.5 5.5 3.0 1.0 90 chrX 4101886 exon CG15375 + chrX 4101931 exon CG15375 + chrX 4101976 exon CG15375 + chrX_4_4100001 chrX_4100001 RAL-338 994 chrX 4132683 4132692 chrX 4132851 4132858 5 167 0.0 0.5 0.2 4.2 175 chrX 4132683 3` UTR GlcAT-I + chrX 4132770 3` UTR GlcAT-I + chrX 4132858 intergenic GlcAT-I +,Fas2 - chrX_5_4130001 chrX_4130001 RAL-338 995 chrX 4296117 4296148 chrX 4296193 4296223 4 76 1.5 2.5 2.0 1.3 106 chrX 4296117 intergenic not near genes chrX 4296170 intergenic not near genes chrX 4296223 intergenic not near genes chrX_4_4295001 chrX_4295001 RAL-338 996 chrX 4396981 4397007 chrX 4397065 4397092 5 85 1.5 2.0 1.8 1.8 111 chrX 4396981 intron CR32773 - chrX 4397036 intron CR32773 - chrX 4397092 intron CR32773 - chrX_5_4395001 chrX_4395001 RAL-338 997 chrX 4763250 4763283 chrX 4763738 4763771 Stalker4 6 484 2.0 1.0 1.5 2.4 521 chrX 4763250 intergenic not near genes chrX 4763510 intergenic not near genes chrX 4763771 intergenic not near genes chrX_6_4760001 chrX_4760001 RAL-338 998 chrX 4827975 4827999 chrX 4835345 4835358 Stalker4 7 7365 0.5 4.5 2.5 2.0 7383 chrX 4827975 intergenic not near genes chrX 4831666 intergenic not near genes chrX 4835358 intergenic not near genes chrX_7_4830001 chrX_4830001 RAL-338 999 chrX 4877338 4877362 chrX 4877419 4877444 5 81 1.0 1.0 1.0 2.5 106 chrX 4877338 intron CG42594 + chrX 4877391 intron CG42594 + chrX 4877444 intron CG42594 + chrX_5_4875001 chrX_4875001 RAL-338 1000 chrX 4990053 4990077 chrX 4997267 4997291 roo 6 7214 0.5 1.0 0.8 3.3 7238 chrX 4990053 intron CR44833 - chrX 4993672 intron CR44833 - chrX 4997291 intron CR44833 - chrX_6_4990001 chrX_4990001 RAL-338 1001 chrX 5131397 5131422 chrX 5131478 5131498 6 76 4.5 1.5 3.0 1.5 101 chrX 5131397 intron,intron CG15465 +,rg + chrX 5131448 intron,intron CG15465 +,rg + chrX 5131498 intron,intron CG15465 +,rg + chrX_6_5130001 chrX_5130001 RAL-338 1002 chrX 5204445 5204468 chrX 5204648 5204671 6 203 2.5 2.0 2.2 1.9 226 chrX 5204445 intron,intron CG15465 +,rg + chrX 5204558 intron,intron CG15465 +,rg + chrX 5204671 intron,intron CG15465 +,rg + chrX_6_5200001 chrX_5200001 RAL-338 1003 chrX 5361783 5361816 chrX 5361889 5361907 6 102 3.0 2.0 2.5 1.7 124 chrX 5361783 intron SK + chrX 5361845 intron SK + chrX 5361907 intron SK + chrX_6_5360001 chrX_5360001 RAL-338 1004 chrX 5634569 5634594 chrX 5634651 5634661 5 78 2.0 1.0 1.5 2.0 92 chrX 5634569 intron CG42492 - chrX 5634615 intron CG42492 - chrX 5634661 intron CG42492 - chrX_5_5630001 chrX_5630001 RAL-338 1005 chrX 5798861 5798878 chrX 5799023 5799040 4 162 0.5 3.0 1.8 1.4 179 chrX 5798861 intergenic not near genes chrX 5798950 intergenic not near genes chrX 5799040 intergenic not near genes chrX_4_5795001 chrX_5795001 RAL-338 1006 chrX 6100909 6100930 chrX 6101034 6101043 6 127 0.5 0.5 0.5 4.0 134 chrX 6100909 intron Nep1 + chrX 6100976 intron Nep1 + chrX 6101043 intron Nep1 + chrX_6_6100001 chrX_6100001 RAL-338 1007 chrX 6134417 6134438 chrX 6134542 6134560 8 124 1.5 1.5 1.5 3.2 143 chrX 6134417 intron Ca-alpha1T - chrX 6134488 intron Ca-alpha1T - chrX 6134560 intron Ca-alpha1T - chrX_8_6130001 chrX_6130001 RAL-338 1008 chrX 6314425 6314450 chrX 6314494 6314526 8 68 1.0 2.5 1.8 2.9 101 chrX 6314425 intron CG15894 + chrX 6314476 intron CG15894 + chrX 6314526 intron CG15894 + chrX_8_6310001 chrX_6310001 RAL-338 1009 chrX 6335217 6335240 chrX 6337727 6337749 Tirant 8 2509 1.0 3.0 2.0 2.7 2532 chrX 6335217 intergenic not near genes chrX 6336483 intergenic not near genes chrX 6337749 intergenic CG3842 + chrX_8_6335001 chrX_6335001 RAL-338 1010 chrX 6392880 6392895 chrX 6397645 6397660 Doc 7 4765 1.5 2.0 1.8 2.5 4780 chrX 6392880 intergenic not near genes chrX 6395270 intergenic not near genes chrX 6397660 intergenic not near genes chrX_7_6395001 chrX_6395001 RAL-338 1011 chrX 6413549 6413568 chrX 6413977 6414001 6 433 0.0 1.0 0.5 4.0 452 chrX 6413549 intergenic not near genes chrX 6413775 intergenic not near genes chrX 6414001 intergenic not near genes chrX_6_6410001 chrX_6410001 RAL-338 1012 chrX 6539922 6539946 chrX 6540019 6540048 5 99 1.0 1.0 1.0 2.5 126 chrX 6539922 intergenic not near genes chrX 6539985 intergenic not near genes chrX 6540048 intergenic not near genes chrX_5_6535001 chrX_6535001 RAL-338 1013 chrX 6562824 6562847 chrX 6571303 6571329 Tirant 5 8481 0.5 2.5 1.5 2.0 8505 chrX 6562824 intron CG34417 + chrX 6567076 intron CG34417 + chrX 6571329 intron CG34417 + chrX_5_6565001 chrX_6565001 RAL-338 1014 chrX 7023601 7023620 chrX 7030991 7031003 Tabor 5 7388 4.5 2.5 3.5 1.1 7402 chrX 7023601 intron CG12541 - chrX 7027302 intron CG12541 - chrX 7031003 intron CG12541 - chrX_5_7025001 chrX_7025001 RAL-338 1015 chrX 7463595 7463617 chrX 7463894 7463916 7 299 0.0 1.5 0.8 3.9 321 chrX 7463595 intergenic not near genes chrX 7463756 intergenic not near genes chrX 7463916 intergenic not near genes chrX_7_7460001 chrX_7460001 RAL-338 1016 chrX 7702512 7702523 chrX 7702603 7702615 4 92 0.0 3.0 1.5 1.6 103 chrX 7702512 intron CHES-1-like - chrX 7702564 intron CHES-1-like - chrX 7702615 intron CHES-1-like - chrX_4_7700001 chrX_7700001 RAL-338 1017 chrX 8305198 8305222 chrX 8305279 8305302 5 78 1.0 3.0 2.0 1.7 104 chrX 8305198 intron nAChRalpha3 - chrX 8305250 intron nAChRalpha3 - chrX 8305302 intron nAChRalpha3 - chrX_5_8305001 chrX_8305001 RAL-338 1018 chrX 8421477 8421490 chrX 8421553 8421581 5 85 2.0 2.0 2.0 1.7 104 chrX 8421477 intron Trf2 + chrX 8421529 intron Trf2 + chrX 8421581 intron Trf2 + chrX_5_8420001 chrX_8420001 RAL-338 1019 chrX 8944910 8944918 chrX 8945137 8945145 4 227 1.0 0.5 0.8 2.2 235 chrX 8944910 intron rdgA + chrX 8945028 intron rdgA + chrX 8945145 intron rdgA + chrX_4_8945001 chrX_8945001 RAL-338 1020 chrX 9062730 9062758 chrX 9062806 9062836 4 78 2.0 1.0 1.5 1.6 106 chrX 9062730 intron CG15365 - chrX 9062783 intron CG15365 - chrX 9062836 intron CG15365 - chrX_4_9060001 chrX_9060001 RAL-338 1021 chrX 9152083 9152108 chrX 9152165 9152191 5 83 1.5 1.0 1.2 2.3 108 chrX 9152083 intergenic dalao +,His3.3B - chrX 9152137 intergenic dalao +,His3.3B - chrX 9152191 intergenic dalao +,His3.3B - chrX_5_9150001 chrX_9150001 RAL-338 1022 chrX 9337953 9337972 chrX 9338044 9338058 5 88 4.0 1.0 2.5 1.4 105 chrX 9337953 intron CG34449 - chrX 9338006 intron CG34449 - chrX 9338058 exon CG34449 - chrX_5_9335001 chrX_9335001 RAL-338 1023 chrX 9377849 9377860 chrX 9377928 9377939 5 79 2.0 2.5 2.2 1.6 90 chrX 9377849 intron mgl - chrX 9377894 intron mgl - chrX 9377939 intron mgl - chrX_5_9375001 chrX_9375001 RAL-338 1024 chrX 9508137 9508154 chrX 9509655 9509672 jockey 5 1518 2.0 0.5 1.2 2.3 1535 chrX 9508137 intron CG32700 - chrX 9508904 intron CG32700 - chrX 9509672 intron CG32700 - chrX_5_9505001 chrX_9505001 RAL-338 1025 chrX 9575797 9575818 chrX 9576120 9576142 mdg3 5 323 2.5 1.0 1.8 1.8 345 chrX 9575797 intron,exon CG32699 -,CG42395 - chrX 9575970 intron,intron CG32699 -,CG42395 - chrX 9576142 intron,5` UTR CG32699 -,CG42395 - chrX_5_9575001 chrX_9575001 RAL-338 1026 chrX 9599182 9599199 chrX 9599258 9599273 5 76 2.5 3.5 3.0 1.2 91 chrX 9599182 intergenic not near genes chrX 9599228 intergenic not near genes chrX 9599273 intergenic not near genes chrX_5_9595001 chrX_9595001 RAL-338 1027 chrX 9783048 9783253 chrX 9783128 9783319 17 70 3.5 1.5 2.5 4.9 271 chrX 9783048 intergenic CG32698 + chrX 9783184 intergenic CG32698 + chrX 9783319 5` UTR CG32698 + chrX_17_9780001 chrX_9780001 RAL-338 1028 chrX 9791861 9791894 chrX 9791958 9791991 5 97 1.5 2.5 2.0 1.7 130 chrX 9791861 intron CG32698 + chrX 9791926 intron CG32698 + chrX 9791991 intron CG32698 + chrX_5_9790001 chrX_9790001 RAL-338 1029 chrX 8382094 8382094 chrX 9845361 9845361 4 1463267 8.0 12.5 10.2 0.4 1463267 chrX 8382094 intergenic not near genes chrX 9113728 exon AP-1gamma + chrX 9845361 intron CG32698 + chrX_4_9110001 chrX_9110001 RAL-338 1030 chrX 10686059 10686075 chrX 10691195 10691212 roo 4 5137 2.0 3.0 2.5 1.1 5153 chrX 10686059 intron X11Lbeta + chrX 10688636 intron X11Lbeta + chrX 10691212 intron X11Lbeta + chrX_4_10685001 chrX_10685001 RAL-338 1031 chrX 10772683 10772695 chrX 10772757 10772776 Tirant 7 81 2.0 1.5 1.8 2.5 93 chrX 10772683 intron CG15211 + chrX 10772730 intron CG15211 + chrX 10772776 intron CG15211 + chrX_7_10770001 chrX_10770001 RAL-338 1032 chrX 11017422 11017438 chrX 11017504 11017520 4 82 1.5 3.0 2.2 1.2 98 chrX 11017422 intron CG42339 - chrX 11017471 intron CG42339 - chrX 11017520 intron CG42339 - chrX_4_11015001 chrX_11015001 RAL-338 1033 chrX 11312057 11312092 chrX 11319409 11319423 Stalker2 7 7347 2.5 2.5 2.5 2.0 7366 chrX 11312057 intergenic not near genes chrX 11315740 intergenic not near genes chrX 11319423 intergenic not near genes chrX_7_11315001 chrX_11315001 RAL-338 1034 chrX 11633417 11633440 chrX 11640470 11640494 297 5 7054 0.5 1.5 1.0 2.5 7077 chrX 11633417 intron Ptp10D + chrX 11636956 intron Ptp10D + chrX 11640494 intron Ptp10D + chrX_5_11635001 chrX_11635001 RAL-338 1035 chrX 11719546 11719577 chrX 11719652 11719682 5 106 2.0 0.5 1.2 2.3 136 chrX 11719546 3` UTR prtp + chrX 11719614 3` UTR prtp + chrX 11719682 3` UTR prtp + chrX_5_11715001 chrX_11715001 RAL-338 1036 chrX 12038091 12038113 chrX 12038285 12038306 8 194 2.0 4.5 3.2 1.9 215 chrX 12038091 intergenic not near genes chrX 12038198 intergenic not near genes chrX 12038306 intergenic not near genes chrX_8_12035001 chrX_12035001 RAL-338 1037 chrX 12176736 12176768 chrX 12176812 12176839 4 74 0.5 2.0 1.2 1.8 103 chrX 12176736 intron,3` UTR Ten-a +,CG1924 - chrX 12176788 intron,3` UTR Ten-a +,CG1924 - chrX 12176839 intron,3` UTR Ten-a +,CG1924 - chrX_4_12175001 chrX_12175001 RAL-338 1038 chrX 12245690 12245719 chrX 12245772 12245801 6 81 1.0 1.0 1.0 3.0 111 chrX 12245690 intron Ten-a + chrX 12245746 intron Ten-a + chrX 12245801 intron Ten-a + chrX_6_12245001 chrX_12245001 RAL-338 1039 chrX 12919717 12919741 chrX 12919804 12919831 5 89 0.0 2.5 1.2 2.3 114 chrX 12919717 intron fne + chrX 12919774 intron fne + chrX 12919831 intron fne + chrX_5_12915001 chrX_12915001 RAL-338 1040 chrX 12969467 12969498 chrX 12969547 12969577 6 77 2.0 1.5 1.8 2.1 110 chrX 12969467 exon Mur11Da + chrX 12969522 exon Mur11Da + chrX 12969577 intron Mur11Da + chrX_6_12965001 chrX_12965001 RAL-338 1041 chrX 13172350 13172372 chrX 13172426 13172448 7 76 4.0 2.0 3.0 1.8 98 chrX 13172350 exon CG34411 - chrX 13172399 intron CG34411 - chrX 13172448 intron CG34411 - chrX_7_13170001 chrX_13170001 RAL-338 1042 chrX 13875965 13875986 chrX 13876049 13876070 5 84 0.0 1.0 0.5 3.3 105 chrX 13875965 intron mamo - chrX 13876018 intron mamo - chrX 13876070 intron mamo - chrX_5_13875001 chrX_13875001 RAL-338 1043 chrX 14105026 14105053 chrX 14114172 14114203 roo 8 9150 1.0 2.5 1.8 2.9 9177 chrX 14105026 intergenic not near genes chrX 14109614 intergenic not near genes chrX 14114203 5` UTR CR44657 + chrX_8_14105001 chrX_14105001 RAL-338 1044 chrX 14130168 14130192 chrX 14130258 14130285 4 92 0.5 4.0 2.2 1.2 117 chrX 14130168 intergenic not near genes chrX 14130226 intergenic not near genes chrX 14130285 intergenic not near genes chrX_4_14130001 chrX_14130001 RAL-338 1045 chrX 14189877 14189892 chrX 14189970 14189987 6 91 2.0 3.0 2.5 1.7 110 chrX 14189877 exon CG11585 + chrX 14189932 exon CG11585 + chrX 14189987 exon CG11585 + chrX_6_14185001 chrX_14185001 RAL-338 1046 chrX 14487843 14487848 chrX 14487918 14487920 4 81 2.0 1.5 1.8 1.4 77 chrX 14487843 intergenic not near genes chrX 14487882 intergenic not near genes chrX 14487920 intergenic not near genes chrX_4_14485001 chrX_14485001 RAL-338 1047 chrX 14636463 14636486 chrX 14641901 14641927 I-element 6 5438 2.0 1.0 1.5 2.4 5464 chrX 14636463 intron NetA - chrX 14639195 intron NetA - chrX 14641927 intron NetA - chrX_6_14635001 chrX_14635001 RAL-338 1048 chrX 14713047 14713079 chrX 14713134 14713167 7 84 0.5 1.5 1.0 3.5 120 chrX 14713047 intron NetB - chrX 14713107 intron NetB - chrX 14713167 intron NetB - chrX_7_14710001 chrX_14710001 RAL-338 1049 chrX 14752831 14752861 chrX 14752915 14752943 4 82 1.5 1.0 1.2 1.8 112 chrX 14752831 intergenic not near genes chrX 14752887 intergenic not near genes chrX 14752943 intergenic not near genes chrX_4_14750001 chrX_14750001 RAL-338 1050 chrX 14767949 14767977 chrX 14768026 14768057 5 79 1.5 0.0 0.8 2.8 108 chrX 14767949 intergenic not near genes chrX 14768003 intergenic not near genes chrX 14768057 intergenic not near genes chrX_5_14765001 chrX_14765001 RAL-338 1051 chrX 14936857 14936881 chrX 14946114 14946138 roo 6 9257 1.5 1.0 1.2 2.7 9281 chrX 14936857 intron pdgy - chrX 14941498 intron pdgy - chrX 14946138 intron pdgy - chrX_6_14940001 chrX_14940001 RAL-338 1052 chrX 14952438 14952465 chrX 14952606 14952633 4 168 0.5 2.5 1.5 1.6 195 chrX 14952438 intron,3` UTR pdgy -,CR44831 - chrX 14952536 intron,3` UTR pdgy -,CR44831 - chrX 14952633 intron,3` UTR pdgy -,CR44831 - chrX_4_14950001 chrX_14950001 RAL-338 1053 chrX 15413053 15413085 chrX 15417355 15417382 Juan 5 4300 2.5 1.0 1.8 1.8 4329 chrX 15413053 intron Cngl - chrX 15415218 intron Cngl - chrX 15417382 intron Cngl - chrX_5_15415001 chrX_15415001 RAL-338 1054 chrX 15589436 15589440 chrX 15589615 15589619 4 178 1.0 1.0 1.0 2.0 183 chrX 15589436 intron CG9220 - chrX 15589528 intron CG9220 - chrX 15589619 intron CG9220 - chrX_4_15585001 chrX_15585001 RAL-338 1055 chrX 15671200 15671209 chrX 15671286 15671295 4 85 1.5 0.0 0.8 2.2 95 chrX 15671200 intergenic CG15646 - chrX 15671248 intergenic CG15646 - chrX 15671295 intergenic CG15646 - chrX_4_15670001 chrX_15670001 RAL-338 1056 chrX 15678047 15678067 chrX 15678112 15678143 7 75 2.5 3.0 2.8 1.8 96 chrX 15678047 intergenic CG12708 + chrX 15678095 intergenic CG12708 + chrX 15678143 intergenic CG12708 + chrX_7_15675001 chrX_15675001 RAL-338 1057 chrX 16329433 16329442 chrX 16329516 16329523 4 82 0.0 1.5 0.8 2.2 90 chrX 16329433 intron CG9919 - chrX 16329478 intron CG9919 - chrX 16329523 exon CG9919 - chrX_4_16325001 chrX_16325001 RAL-338 1058 chrX 16407191 16407215 chrX 16407268 16407292 7 76 0.5 0.5 0.5 4.7 101 chrX 16407191 intron CG4301 + chrX 16407242 intron CG4301 + chrX 16407292 intron CG4301 + chrX_7_16405001 chrX_16405001 RAL-338 1059 chrX 16519940 16519959 chrX 16520026 16520043 7 86 0.5 2.0 1.2 3.2 103 chrX 16519940 intron para - chrX 16519992 intron para - chrX 16520043 intron para - chrX_7_16515001 chrX_16515001 RAL-338 1060 chrX 16529430 16529442 chrX 16529540 16529553 4 111 0.0 1.0 0.5 2.7 123 chrX 16529430 intron para - chrX 16529492 intron para - chrX 16529553 intron para - chrX_4_16525001 chrX_16525001 RAL-338 1061 chrX 16688449 16688464 chrX 16688741 16688756 4 292 5.5 0.5 3.0 1.0 307 chrX 16688449 intron Sep4 - chrX 16688602 intron Sep4 - chrX 16688756 intron Sep4 - chrX_4_16685001 chrX_16685001 RAL-338 1062 chrX 16869805 16869831 chrX 16870019 16870046 4 214 1.0 1.5 1.2 1.8 241 chrX 16869805 intron CG13003 - chrX 16869926 intron CG13003 - chrX 16870046 intron CG13003 - chrX_4_16865001 chrX_16865001 RAL-338 1063 chrX 17365352 17365384 chrX 17365760 17365792 9 408 2.0 1.5 1.8 3.2 440 chrX 17365352 intergenic not near genes chrX 17365572 intergenic not near genes chrX 17365792 intergenic not near genes chrX_9_17365001 chrX_17365001 RAL-338 1064 chrX 17373370 17373395 chrX 17373467 17373492 4 98 0.5 0.5 0.5 2.7 122 chrX 17373370 intergenic not near genes chrX 17373431 intergenic not near genes chrX 17373492 intergenic not near genes chrX_4_17370001 chrX_17370001 RAL-338 1065 chrX 17427046 17427074 chrX 17427133 17427161 6 87 1.0 3.0 2.0 2.0 115 chrX 17427046 intron,intron CG12994 -,CG5613 + chrX 17427104 intron,intron CG12994 -,CG5613 + chrX 17427161 intron,intron CG12994 -,CG5613 + chrX_6_17425001 chrX_17425001 RAL-338 1066 chrX 17431698 17431717 chrX 17431782 17431802 6 84 0.0 0.0 0.0 6.0 104 chrX 17431698 intron CG12994 - chrX 17431750 intron CG12994 - chrX 17431802 intron CG12994 - chrX_6_17430001 chrX_17430001 RAL-338 1067 chrX 17680892 17680922 chrX 17680969 17680999 8 75 0.5 2.0 1.2 3.6 107 chrX 17680892 intron chas - chrX 17680946 intron chas - chrX 17680999 intron chas - chrX_8_17680001 chrX_17680001 RAL-338 1068 chrX 17999375 17999398 chrX 17999457 17999480 5 81 1.5 0.0 0.8 2.8 105 chrX 17999375 intron Sh - chrX 17999428 intron Sh - chrX 17999480 intron Sh - chrX_5_17995001 chrX_17995001 RAL-338 1069 chrX 18122820 18122845 chrX 18122896 18122919 4 75 2.5 1.5 2.0 1.3 99 chrX 18122820 5` UTR CR45606 + chrX 18122870 5` UTR CR45606 + chrX 18122919 5` UTR CR45606 + chrX_4_18120001 chrX_18120001 RAL-338 1070 chrX 18281549 18281578 chrX 18281631 18281646 4 73 2.5 0.5 1.5 1.6 97 chrX 18281549 intron upd3 + chrX 18281598 intron upd3 + chrX 18281646 intron upd3 + chrX_4_18280001 chrX_18280001 RAL-338 1071 chrX 18467227 18467254 chrX 18467387 18467418 10 163 3.0 1.5 2.2 3.1 191 chrX 18467227 intron CG32547 - chrX 18467322 intron CG32547 - chrX 18467418 intron CG32547 - chrX_10_18465001 chrX_18465001 RAL-338 1072 chrX 18645027 18645042 chrX 18645125 18645138 4 96 2.0 3.5 2.8 1.1 111 chrX 18645027 intron Rip11 - chrX 18645082 intron Rip11 - chrX 18645138 intron Rip11 - chrX_4_18645001 chrX_18645001 RAL-338 1073 chrX 18910953 18910969 chrX 18911040 18911055 4 86 2.5 0.5 1.5 1.6 102 chrX 18910953 3` UTR CG7378 + chrX 18911004 3` UTR CG7378 + chrX 18911055 3` UTR CG7378 + chrX_4_18910001 chrX_18910001 RAL-338 1074 chrX 19014360 19014392 chrX 19014437 19014466 6 76 1.0 2.0 1.5 2.4 106 chrX 19014360 intron CG43759 + chrX 19014413 intron CG43759 + chrX 19014466 intron CG43759 + chrX_6_19010001 chrX_19010001 RAL-338 1075 chrX 19084099 19084123 chrX 19084219 19084243 7 120 0.5 0.5 0.5 4.7 144 chrX 19084099 intergenic CR45503 + chrX 19084171 intergenic CR45503 + chrX 19084243 intergenic CR45503 + chrX_7_19080001 chrX_19080001 RAL-338 1076 chrX 13057298 13057300 chrX 19242813 19242814 6 6185514 2.5 1.5 2.0 2.0 6185516 chrX 13057298 intron rad + chrX 16150056 intergenic not near genes chrX 19242814 intergenic not near genes chrX_6_16150001 chrX_16150001 RAL-338 1077 chrX 19281016 19281026 chrX 19281141 19281155 4 128 0.0 0.5 0.2 3.3 139 chrX 19281016 intergenic CG8034 - chrX 19281086 intergenic CG8034 - chrX 19281155 intergenic CG8034 - chrX_4_19280001 chrX_19280001 RAL-338 1078 chrX 19324687 19324707 chrX 19325135 19325155 4 448 0.0 0.5 0.2 3.3 468 chrX 19324687 intergenic not near genes chrX 19324921 intergenic not near genes chrX 19325155 intergenic not near genes chrX_4_19320001 chrX_19320001 RAL-338 1079 chrX 19472151 19472161 chrX 19472690 19472711 jockey 6 560 1.5 3.0 2.2 1.9 560 chrX 19472151 intergenic kek5 + chrX 19472431 intergenic not near genes chrX 19472711 intergenic not near genes chrX_6_19470001 chrX_19470001 RAL-338 1080 chrX 19500567 19500721 chrX 19500644 19500808 4 79 0.0 0.0 0.0 4.0 241 chrX 19500567 intron,intron CG14200 +,Pfrx + chrX 19500688 intron,intron CG14200 +,Pfrx + chrX 19500808 intron,intron CG14200 +,Pfrx + chrX_4_19500001 chrX_19500001 RAL-338 1081 chrX 19593951 19593976 chrX 19594036 19594061 9 85 1.0 4.5 2.8 2.4 110 chrX 19593951 exon CG14205 + chrX 19594006 intron CG14205 + chrX 19594061 intron CG14205 + chrX_9_19590001 chrX_19590001 RAL-338 1082 chrX 19710085 19710101 chrX 19711869 19711874 S-element 5 1781 2.0 2.0 2.0 1.7 1789 chrX 19710085 intron meso18E - chrX 19710980 intron meso18E - chrX 19711874 intron meso18E - chrX_5_19710001 chrX_19710001 RAL-338 1083 chrX 19729611 19729640 chrX 19729694 19729723 5 81 0.5 1.5 1.0 2.5 112 chrX 19729611 3` UTR CG12531 + chrX 19729667 3` UTR CG12531 + chrX 19729723 3` UTR CG12531 + chrX_5_19725001 chrX_19725001 RAL-338 1084 chrX 20065807 20065834 chrX 20065886 20065913 5 79 1.5 0.5 1.0 2.5 106 chrX 20065807 intergenic not near genes chrX 20065860 intergenic not near genes chrX 20065913 intergenic not near genes chrX_5_20065001 chrX_20065001 RAL-338 1085 chrX 20377326 20377347 chrX 20378787 20378798 hobo 8 1464 2.0 3.0 2.5 2.3 1472 chrX 20377326 intergenic not near genes chrX 20378062 intergenic not near genes chrX 20378798 intergenic not near genes chrX_8_20375001 chrX_20375001 RAL-338 1086 chrX 20426178 20426210 chrX 20428372 20428406 7 2197 22.0 28.5 25.2 0.3 2228 chrX 20426178 exon cactin + chrX 20427292 intergenic CG11710 -,CG15456 - chrX 20428406 exon CG11710 - chrX_7_20425001 chrX_20425001 RAL-338 1087 chrX 20504134 20504156 chrX 20505653 20505656 transib2 8 1517 2.0 1.5 1.8 2.9 1522 chrX 20504134 intron RhoGAP19D - chrX 20504895 intron RhoGAP19D - chrX 20505656 intron RhoGAP19D - chrX_8_20500001 chrX_20500001 RAL-338 1088 chrX 20658298 20658317 chrX 20658387 20658406 4 88 0.0 3.5 1.8 1.4 108 chrX 20658298 5` UTR Cyp6v1 + chrX 20658352 5` UTR Cyp6v1 + chrX 20658406 5` UTR Cyp6v1 + chrX_4_20655001 chrX_20655001 RAL-338 1089 chrX 20710413 20710439 chrX 20710490 20710516 4 77 0.0 0.5 0.2 3.3 103 chrX 20710413 intergenic not near genes chrX 20710464 intergenic not near genes chrX 20710516 intergenic not near genes chrX_4_20710001 chrX_20710001 RAL-338 1090 chrX 20940718 20940755 chrX 20942187 20942222 hobo 8 1468 0.0 0.5 0.2 6.7 1504 chrX 20940718 intergenic not near genes chrX 20941470 intergenic not near genes chrX 20942222 intergenic not near genes chrX_8_20940001 chrX_20940001 RAL-338 1091 chrX 21086136 21086161 chrX 21087165 21087184 jockey 4 1028 0.5 0.5 0.5 2.7 1048 chrX 21086136 intergenic not near genes chrX 21086660 intergenic not near genes chrX 21087184 intergenic not near genes chrX_4_21085001 chrX_21085001 RAL-338 1092 chrX 21264734 21264763 chrX 21264810 21264839 4 76 1.5 2.5 2.0 1.3 105 chrX 21264734 intron CG32521 - chrX 21264786 intron CG32521 - chrX 21264839 intron CG32521 - chrX_4_21260001 chrX_21260001 RAL-338 1093 chrX 21419707 21419730 chrX 21419794 21419816 4 88 1.5 3.0 2.2 1.2 109 chrX 21419707 intergenic not near genes chrX 21419762 intergenic not near genes chrX 21419816 intergenic not near genes chrX_4_21415001 chrX_21415001 RAL-338 1094 chrX 22478871 22478897 chrX 22479004 22479030 6 133 0.0 1.5 0.8 3.3 159 chrX 22478871 intron CG12576 - chrX 22478950 intron CG12576 - chrX 22479030 intron CG12576 - chrX_6_22475001 chrX_22475001 RAL-338 1095 chrX 22492503 22492514 chrX 22493016 22493019 4 509 1.5 1.5 1.5 1.6 516 chrX 22492503 intron l(1)G0196 + chrX 22492761 intron l(1)G0196 + chrX 22493019 intron l(1)G0196 + chrX_4_22490001 chrX_22490001 RAL-338 1096 chrX 22584339 22584364 chrX 22584430 22584454 6 91 0.0 1.0 0.5 4.0 115 chrX 22584339 intron Cda4 - chrX 22584396 intron Cda4 - chrX 22584454 intron Cda4 - chrX_6_22580001 chrX_22580001 RAL-338 1097 chrX 22660573 22660589 chrX 22660657 22660673 5 84 1.5 0.0 0.8 2.8 100 chrX 22660573 intron CR44997 + chrX 22660623 intron CR44997 + chrX 22660673 intron CR44997 + chrX_5_22660001 chrX_22660001 RAL-338 1098 chrY 975598 975819 chrY 975714 975894 5 110 87.0 68.5 77.8 0.1 296 chrY 975598 intergenic not near genes chrY 975746 intergenic not near genes chrY 975894 intergenic not near genes chrY_5_975001 chrY_975001 RAL-338