SV#	Chr_5p	Chr_coord_5p_start	Chr_coord_5p_end	Chr_3p	Chr_coord_3p_start	Chr_coord_3p_end	repName	Reads_collapsed	avg_del_len	RefGen_3prime	Refgen_5prime	RefGen_Avg	Coverage_Ratio	size	Chr_5p	Chr_coord_5p	classification_5p	comment_5p	Chr_mid	Chr_coord_mid	classification_mid	comment_mid	Chr_3p	Chr_coord_3p	classification_3p	comment_3p	depletion_code	loci_code	libname
7	chr2L	1220136	1220151	chr2L	1227601	1227617	blood	4	7465	2.0	1.0	1.5	1.6	7481	chr2L	1220136	intron	CG42329 +	chr2L	1223876	intron	CG42329 +	chr2L	1227617	intron	CG42329 +	chr2L_4_1220001	chr2L_1220001	RAL-336
9	chr2L	1711361	1711385	chr2L	1711681	1711709	mdg3	4	319	4.5	5.5	5.0	0.7	348	chr2L	1711361	3` UTR,3` UTR	mRpL48 +,frtz -	chr2L	1711535	3` UTR	frtz -	chr2L	1711709	3` UTR	frtz -	chr2L_4_1710001	chr2L_1710001	RAL-336
11	chr2L	2112122	2112146	chr2L	2119784	2119807	opus	5	7661	2.0	1.5	1.8	1.8	7685	chr2L	2112122	intergenic	not near genes	chr2L	2115964	intergenic	not near genes	chr2L	2119807	intergenic	not near genes	chr2L_5_2115001	chr2L_2115001	RAL-336
15	chr2L	3073045	3073061	chr2L	3078248	3078264	copia	5	5203	1.0	3.0	2.0	1.7	5219	chr2L	3073045	intron	toc -	chr2L	3075654	intron	toc -	chr2L	3078264	intron	toc -	chr2L_5_3075001	chr2L_3075001	RAL-336
23	chr2L	4601705	4601726	chr2L	4609146	4609165	mdg1	4	7440	2.5	2.0	2.2	1.2	7460	chr2L	4601705	intron	dp -	chr2L	4605435	intron	dp -	chr2L	4609165	intron	dp -	chr2L_4_4605001	chr2L_4605001	RAL-336
30	chr2L	6363148	6363181	chr2L	6366070	6366107	Burdock	5	2922	0.0	1.0	0.5	3.3	2959	chr2L	6363148	intergenic	not near genes	chr2L	6364628	intergenic	not near genes	chr2L	6366107	intergenic	not near genes	chr2L_5_6360001	chr2L_6360001	RAL-336
31	chr2L	6426859	6426886	chr2L	6445117	6445145	roo	10	18259	3.5	2.5	3.0	2.5	18286	chr2L	6426859	3` UTR	CG9527 -	chr2L	6436002	intron	CG9527 -	chr2L	6445145	exon	CG9527 -	chr2L_10_6435001	chr2L_6435001	RAL-336
35	chr2L	7343326	7343359	chr2L	7350442	7350475	roo	4	7116	3.0	1.5	2.2	1.2	7149	chr2L	7343326	intron	Wnt6 +	chr2L	7346900	intron	Wnt6 +	chr2L	7350475	intron	Wnt6 +	chr2L_4_7345001	chr2L_7345001	RAL-336
39	chr2L	7977093	7977110	chr2L	7984069	7984085	297	5	6975	1.0	3.0	2.0	1.7	6992	chr2L	7977093	intron	Snoo -	chr2L	7980589	intron	Snoo -	chr2L	7984085	intron,5` UTR	Snoo -,CG7231 +	chr2L_5_7980001	chr2L_7980001	RAL-336
42	chr2L	8452428	8452450	chr2L	8461598	8461621	roo	6	9170	1.0	1.5	1.2	2.7	9193	chr2L	8452428	intron	fu12 -	chr2L	8457024	intron	fu12 -	chr2L	8461621	intron	fu12 -	chr2L_6_8455001	chr2L_8455001	RAL-336
43	chr2L	9000277	9000313	chr2L	9007787	9007819	roo	9	7509	1.5	0.5	1.0	4.5	7542	chr2L	9000277	intergenic	Try29F +	chr2L	9004048	intergenic	not near genes	chr2L	9007819	intergenic	not near genes	chr2L_9_9000001	chr2L_9000001	RAL-336
48	chr2L	9393500	9393526	chr2L	9396467	9396493	jockey	6	2966	0.5	1.5	1.0	3.0	2993	chr2L	9393500	intron	Shawl -	chr2L	9394996	intron	Shawl -	chr2L	9396493	intron	Shawl -	chr2L_6_9390001	chr2L_9390001	RAL-336
52	chr2L	9973727	9973752	chr2L	9980846	9980871	HMS-Beagle	4	7119	1.0	1.0	1.0	2.0	7144	chr2L	9973727	intergenic	not near genes	chr2L	9977299	intergenic	not near genes	chr2L	9980871	intergenic	not near genes	chr2L_4_9975001	chr2L_9975001	RAL-336
61	chr2L	12739174	12739203	chr2L	12743955	12743984	Doc	8	4780	0.5	2.5	1.5	3.2	4810	chr2L	12739174	exon	MRP +	chr2L	12741579	intron	MRP +	chr2L	12743984	exon	MRP +	chr2L_8_12740001	chr2L_12740001	RAL-336
64	chr2L	13405649	13405679	chr2L	13410446	13410476	Doc	11	4793	4.0	4.0	4.0	2.2	4827	chr2L	13405649	exon	CG7110 +	chr2L	13408062	intron	CG7110 +	chr2L	13410476	intron	CG7110 +	chr2L_11_13405001	chr2L_13405001	RAL-336
66	chr2L	13449461	13449494	chr2L	13456897	13456930	Quasimodo	7	7436	2.0	3.0	2.5	2.0	7469	chr2L	13449461	intron,5` UTR	CG42784 +,Hsp60D -	chr2L	13453196	intron	CG42784 +	chr2L	13456930	intron	CG42784 +	chr2L_7_13450001	chr2L_13450001	RAL-336
74	chr2L	16071771	16071771	chr2L	16217660	16217661	copia	22	145889	5.0	19.0	12.0	1.7	145890	chr2L	16071771	intron	beat-Ia +	chr2L	16144716	intergenic	not near genes	chr2L	16217661	intergenic	not near genes	chr2L_22_16140001	chr2L_16140001	RAL-336
76	chr2L	16071771	16071771	chr2L	16217660	16217660	copia	15	145889	5.0	19.0	12.0	1.2	145889	chr2L	16071771	intron	beat-Ia +	chr2L	16144716	intergenic	not near genes	chr2L	16217660	intergenic	not near genes	chr2L_15_16140001	chr2L_16140001	RAL-336
77	chr2L	16280255	16280287	chr2L	16281425	16281439	1360	6	1165	0.0	2.0	1.0	3.0	1184	chr2L	16280255	intron	crp -	chr2L	16280847	intron	crp -	chr2L	16281439	intron	crp -	chr2L_6_16280001	chr2L_16280001	RAL-336
83	chr2L	17432020	17432036	chr2L	17432127	17432143	1360	4	107	0.0	0.0	0.0	4.0	123	chr2L	17432020	intron	Dif -	chr2L	17432082	intron	Dif -	chr2L	17432143	intron	Dif -	chr2L_4_17430001	chr2L_17430001	RAL-336
90	chr2L	19345013	19345047	chr2L	19357222	19357249	blood	5	12207	1.0	1.0	1.0	2.5	12236	chr2L	19345013	intron	dnt -	chr2L	19351131	intron	dnt -	chr2L	19357249	intron	dnt -	chr2L_5_19350001	chr2L_19350001	RAL-336
93	chr2L	19620092	19620127	chr2L	19621081	19621102	jockey	4	984	0.5	0.0	0.2	3.3	1010	chr2L	19620092	intron	Lar +	chr2L	19620597	intron	Lar +	chr2L	19621102	intron	Lar +	chr2L_4_19620001	chr2L_19620001	RAL-336
95	chr2L	19762816	19762836	chr2L	19763055	19763077	pogo	6	241	5.5	2.5	4.0	1.2	261	chr2L	19762816	intron	fbp -	chr2L	19762946	intron	fbp -	chr2L	19763077	intron	fbp -	chr2L_6_19760001	chr2L_19760001	RAL-336
98	chr2L	20272117	20272139	chr2L	20282828	20282850	copia	8	10711	3.0	4.0	3.5	1.8	10733	chr2L	20272117	intergenic	not near genes	chr2L	20277484	intergenic	not near genes	chr2L	20282850	intergenic	not near genes	chr2L_8_20275001	chr2L_20275001	RAL-336
99	chr2L	20303183	20303194	chr2L	20310650	20310661	blood	5	7467	1.5	1.5	1.5	2.0	7478	chr2L	20303183	intergenic	not near genes	chr2L	20306922	intergenic	not near genes	chr2L	20310661	intergenic	not near genes	chr2L_5_20305001	chr2L_20305001	RAL-336
101	chr2L	20576221	20576250	chr2L	20583689	20583718	blood	4	7468	2.5	2.5	2.5	1.1	7497	chr2L	20576221	intergenic	not near genes	chr2L	20579970	intergenic	not near genes	chr2L	20583718	3` UTR	CR44909 -	chr2L_4_20575001	chr2L_20575001	RAL-336
104	chr2L	21020276	21020302	chr2L	21023953	21023975	NOF	6	3676	0.0	2.0	1.0	3.0	3699	chr2L	21020276	intron	CG42238 -	chr2L	21022126	intron	CG42238 -	chr2L	21023975	intron	CG42238 -	chr2L_6_21020001	chr2L_21020001	RAL-336
107	chr2R	4838875	4838884	chr2R	4840398	4840407	transib2	5	1523	2.0	0.5	1.2	2.3	1532	chr2R	4838875	intergenic	not near genes	chr2R	4839641	intergenic	not near genes	chr2R	4840407	intergenic	not near genes	chr2R_5_4835001	chr2R_4835001	RAL-336
111	chr2R	5869288	5869301	chr2R	5874364	5874377	flea	4	5076	0.0	2.5	1.2	1.8	5089	chr2R	5869288	intergenic	not near genes	chr2R	5871832	intergenic	not near genes	chr2R	5874377	intergenic	not near genes	chr2R_4_5870001	chr2R_5870001	RAL-336
119	chr2R	7196567	7196598	chr2R	7201342	7201373	F-element	6	4775	2.5	1.0	1.8	2.1	4806	chr2R	7196567	intron	pk +	chr2R	7198970	intron	pk +	chr2R	7201373	intron	pk +	chr2R_6_7195001	chr2R_7195001	RAL-336
120	chr2R	7209863	7209872	chr2R	7217611	7217633	roo	5	7753	0.5	1.0	0.8	2.8	7770	chr2R	7209863	intron	pk +	chr2R	7213748	intron	pk +	chr2R	7217633	intron	pk +	chr2R_5_7210001	chr2R_7210001	RAL-336
122	chr2R	7434892	7434902	chr2R	7439193	7439202	Juan	5	4301	1.0	4.5	2.8	1.3	4310	chr2R	7434892	intergenic	so +	chr2R	7437047	intergenic	not near genes	chr2R	7439202	intergenic	not near genes	chr2R_5_7435001	chr2R_7435001	RAL-336
123	chr2R	7815671	7815703	chr2R	7822140	7822171	Burdock	5	6469	1.5	1.5	1.5	2.0	6500	chr2R	7815671	intergenic	CG1882 +	chr2R	7818921	intergenic	not near genes	chr2R	7822171	3` UTR	cathD -	chr2R_5_7815001	chr2R_7815001	RAL-336
130	chr2R	8398219	8398239	chr2R	8402999	8403020	Doc	4	4781	5.0	2.5	3.8	0.8	4801	chr2R	8398219	intron	CG2121 -	chr2R	8400620	intron	CG2121 -	chr2R	8403020	intron	CG2121 -	chr2R_4_8400001	chr2R_8400001	RAL-336
145	chr2R	10005848	10005877	chr2R	10007013	10007041	1360	4	1164	2.0	1.0	1.5	1.6	1193	chr2R	10005848	intron	Pka-R2 -	chr2R	10006444	intron	Pka-R2 -	chr2R	10007041	intron	Pka-R2 -	chr2R_4_10005001	chr2R_10005001	RAL-336
156	chr2R	11207827	11207848	chr2R	11208009	11208041	BS	6	187	3.0	2.0	2.5	1.7	214	chr2R	11207827	intron	shn +	chr2R	11207934	intron	shn +	chr2R	11208041	intron	shn +	chr2R_6_11205001	chr2R_11205001	RAL-336
158	chr2R	11472648	11472680	chr2R	11473844	11473875	pogo	4	1194	0.0	2.0	1.0	2.0	1227	chr2R	11472648	intergenic	not near genes	chr2R	11473262	intergenic	not near genes	chr2R	11473875	intergenic	not near genes	chr2R_4_11470001	chr2R_11470001	RAL-336
161	chr2R	12481141	12481165	chr2R	12482945	12482966	roo	6	1801	5.0	4.5	4.8	1.0	1825	chr2R	12481141	exon	Dh44-R2 +	chr2R	12482054	intron	Dh44-R2 +	chr2R	12482966	intron	Dh44-R2 +	chr2R_6_12480001	chr2R_12480001	RAL-336
163	chr2R	13136842	13136870	chr2R	13141637	13141668	Doc	9	4797	2.0	5.5	3.8	1.9	4826	chr2R	13136842	exon	Cap-G +	chr2R	13139255	intron	Cap-G +	chr2R	13141668	intron	Cap-G +	chr2R_9_13135001	chr2R_13135001	RAL-336
164	chr2R	13580493	13580529	chr2R	13580843	13580867	jockey	13	345	2.0	5.0	3.5	2.9	374	chr2R	13580493	3` UTR	CG6191 -	chr2R	13580680	3` UTR,3` UTR	CG6191 -,CG45088 -	chr2R	13580867	3` UTR,3` UTR	CG6191 -,CG45088 -	chr2R_13_13580001	chr2R_13580001	RAL-336
165	chr2R	13905600	13905635	chr2R	13907582	13907599	Rt1a	5	1977	3.0	3.0	3.0	1.2	1999	chr2R	13905600	intron	shot -	chr2R	13906600	intron	shot -	chr2R	13907599	intron	shot -	chr2R_5_13905001	chr2R_13905001	RAL-336
173	chr2R	15015461	15015485	chr2R	15022878	15022909	mdg1	4	7422	1.0	1.0	1.0	2.0	7448	chr2R	15015461	intron	hbs +	chr2R	15019185	intron	hbs +	chr2R	15022909	intron	hbs +	chr2R_4_15015001	chr2R_15015001	RAL-336
188	chr2R	17782334	17782386	chr2R	17783582	17783589	pogo	4	1225	1.0	0.5	0.8	2.2	1255	chr2R	17782334	intergenic	CG33981 -,fab1 -	chr2R	17782962	intergenic	not near genes	chr2R	17783589	intergenic	mir-31a -	chr2R_4_17780001	chr2R_17780001	RAL-336
190	chr2R	18045667	18045691	chr2R	18046019	18046043	jockey	5	352	2.0	0.5	1.2	2.3	376	chr2R	18045667	intergenic	not near genes	chr2R	18045855	intergenic	not near genes	chr2R	18046043	intergenic	CG5767 -	chr2R_5_18045001	chr2R_18045001	RAL-336
194	chr2R	18575798	18575830	chr2R	18581985	18582018	3S18	5	6178	4.5	0.5	2.5	1.4	6220	chr2R	18575798	intron	GEFmeso -	chr2R	18578908	intron	GEFmeso -	chr2R	18582018	intron	GEFmeso -	chr2R_5_18575001	chr2R_18575001	RAL-336
195	chr2R	18590871	18590901	chr2R	18600019	18600053	roo	5	9151	3.5	2.5	3.0	1.2	9182	chr2R	18590871	intron	GEFmeso -	chr2R	18595462	intron	GEFmeso -	chr2R	18600053	intron	GEFmeso -	chr2R_5_18595001	chr2R_18595001	RAL-336
203	chr2R	19914846	19914874	chr2R	19922258	19922265	mdg1	5	7408	1.0	0.5	0.8	2.8	7419	chr2R	19914846	intergenic	not near genes	chr2R	19918556	intergenic	not near genes	chr2R	19922265	intergenic	not near genes	chr2R_5_19915001	chr2R_19915001	RAL-336
218	chr2R	22774978	22775002	chr2R	22775396	22775420	jockey	4	418	1.0	2.5	1.8	1.4	442	chr2R	22774978	intron	CG42260 -	chr2R	22775199	intron	CG42260 -	chr2R	22775420	intron	CG42260 -	chr2R_4_22775001	chr2R_22775001	RAL-336
235	chr2R	24177234	24177259	chr2R	24184719	24184744	412	5	7485	1.0	0.5	0.8	2.8	7510	chr2R	24177234	3` UTR	Nop60B +	chr2R	24180989	intron	Nop60B +	chr2R	24184744	3` UTR	Nop60B +	chr2R_5_24180001	chr2R_24180001	RAL-336
238	chr2R	24353426	24353458	chr2R	24361788	24361812	roo	12	8361	2.0	2.0	2.0	4.0	8386	chr2R	24353426	intron,intron	bs +,CR44811 -	chr2R	24357619	intron,intron	bs +,CR44811 -	chr2R	24361812	intron,intron	bs +,CR44811 -	chr2R_12_24355001	chr2R_24355001	RAL-336
241	chr2R	24647591	24647618	chr2R	24655146	24655175	412	10	7555	1.5	3.0	2.2	3.1	7584	chr2R	24647591	intergenic	not near genes	chr2R	24651383	intergenic	not near genes	chr2R	24655175	intergenic	not near genes	chr2R_10_24650001	chr2R_24650001	RAL-336
242	chr2R	24727888	24727915	chr2R	24735396	24735423	mdg1	13	7506	1.0	7.0	4.0	2.6	7535	chr2R	24727888	intron	Mid1 -	chr2R	24731656	intron	Mid1 -	chr2R	24735423	intron	Mid1 -	chr2R_13_24730001	chr2R_24730001	RAL-336
243	chr2R	24763608	24763644	chr2R	24765584	24765597	G2	17	1971	5.5	6.0	5.8	2.5	1989	chr2R	24763608	exon	CG3894 +	chr2R	24764602	intron	CG3894 +	chr2R	24765597	exon	CG3894 +	chr2R_17_24760001	chr2R_24760001	RAL-336
255	chr3L	939773	939801	chr3L	940893	940904	jockey	9	1119	3.5	4.0	3.8	1.9	1131	chr3L	939773	intron	Glut1 +	chr3L	940338	intron	Glut1 +	chr3L	940904	intron	Glut1 +	chr3L_9_940001	chr3L_940001	RAL-336
259	chr3L	1154131	1154156	chr3L	1163281	1163289	roo	4	9142	0.0	1.0	0.5	2.7	9158	chr3L	1154131	intron	bab2 -	chr3L	1158710	intron	bab2 -	chr3L	1163289	intron	bab2 -	chr3L_4_1155001	chr3L_1155001	RAL-336
260	chr3L	1219607	1219622	chr3L	1227338	1227354	412	8	7732	4.5	4.5	4.5	1.5	7747	chr3L	1219607	intron	mwh +	chr3L	1223480	intron	mwh +	chr3L	1227354	intron	mwh +	chr3L_8_1220001	chr3L_1220001	RAL-336
266	chr3L	1506000	1506032	chr3L	1513592	1513628	17.6	8	7591	3.5	4.5	4.0	1.6	7628	chr3L	1506000	intron,intron	Psa +,cue -	chr3L	1509814	intron,intron	Psa +,cue -	chr3L	1513628	intron,intron	Psa +,cue -	chr3L_8_1505001	chr3L_1505001	RAL-336
272	chr3L	2447504	2447535	chr3L	2456660	2456674	roo	7	9153	3.0	3.0	3.0	1.8	9170	chr3L	2447504	intron	CG45186 +	chr3L	2452089	intron	CG45186 +	chr3L	2456674	intron	CG45186 +	chr3L_7_2450001	chr3L_2450001	RAL-336
287	chr3L	3833737	3833760	chr3L	3833978	3834001	pogo	5	241	4.0	1.5	2.8	1.3	264	chr3L	3833737	intron	enc +	chr3L	3833869	intron	enc +	chr3L	3834001	intron	enc +	chr3L_5_3830001	chr3L_3830001	RAL-336
297	chr3L	5537726	5537757	chr3L	5538064	5538083	jockey	4	333	2.0	1.5	1.8	1.4	357	chr3L	5537726	intergenic	not near genes	chr3L	5537904	intergenic	not near genes	chr3L	5538083	intergenic	CG10625 -	chr3L_4_5535001	chr3L_5535001	RAL-336
298	chr3L	5926334	5926343	chr3L	5926507	5926530	BS	4	181	2.5	2.5	2.5	1.1	196	chr3L	5926334	intron	Vap-33B +	chr3L	5926432	intron	Vap-33B +	chr3L	5926530	intron	Vap-33B +	chr3L_4_5925001	chr3L_5925001	RAL-336
299	chr3L	6040366	6040393	chr3L	6042722	6042748	Doc	5	2353	1.0	1.0	1.0	2.5	2382	chr3L	6040366	intergenic	Jon65Aiv +	chr3L	6041557	intergenic	not near genes	chr3L	6042748	intergenic	not near genes	chr3L_5_6040001	chr3L_6040001	RAL-336
305	chr3L	7377336	7377349	chr3L	7380422	7380454	297	4	3100	1.5	2.5	2.0	1.3	3118	chr3L	7377336	intron	SMSr -	chr3L	7378895	intron	SMSr -	chr3L	7380454	intron	SMSr -	chr3L_4_7375001	chr3L_7375001	RAL-336
308	chr3L	7886528	7886547	chr3L	7889046	7889065	Stalker4	4	2518	0.5	1.5	1.0	2.0	2537	chr3L	7886528	intron	CG32365 +	chr3L	7887796	intron	CG32365 +	chr3L	7889065	intron	CG32365 +	chr3L_4_7885001	chr3L_7885001	RAL-336
319	chr3L	9219244	9219277	chr3L	9219915	9219929	jockey	5	666	2.0	1.5	1.8	1.8	685	chr3L	9219244	intergenic	not near genes	chr3L	9219586	intergenic	not near genes	chr3L	9219929	intergenic	not near genes	chr3L_5_9215001	chr3L_9215001	RAL-336
320	chr3L	9270619	9270642	chr3L	9278374	9278375	roo	4	7749	1.5	1.5	1.5	1.6	7756	chr3L	9270619	intron	GluRIB +	chr3L	9274497	intron	GluRIB +	chr3L	9278375	intron	GluRIB +	chr3L_4_9270001	chr3L_9270001	RAL-336
322	chr3L	9443515	9443537	chr3L	9445306	9445327	S-element	7	1788	3.0	4.0	3.5	1.6	1812	chr3L	9443515	intron	CG33926 +	chr3L	9444421	intron	CG33926 +	chr3L	9445327	intron	CG33926 +	chr3L_7_9440001	chr3L_9440001	RAL-336
334	chr3L	11723091	11723117	chr3L	11727883	11727891	Doc	5	4790	2.5	2.5	2.5	1.4	4800	chr3L	11723091	3` UTR	Bmcp +	chr3L	11725491	intron	Bmcp +	chr3L	11727891	3` UTR	Bmcp +	chr3L_5_11725001	chr3L_11725001	RAL-336
348	chr3L	13525173	13525182	chr3L	13532951	13532977	roo	7	7792	3.0	1.5	2.2	2.2	7804	chr3L	13525173	intergenic	not near genes	chr3L	13529075	intergenic	not near genes	chr3L	13532977	intergenic	not near genes	chr3L_7_13525001	chr3L_13525001	RAL-336
351	chr3L	14721187	14721210	chr3L	14723030	14723053	Rt1c	4	1843	0.0	0.5	0.2	3.3	1866	chr3L	14721187	intron	ome +	chr3L	14722120	intron	ome +	chr3L	14723053	intron	ome +	chr3L_4_14720001	chr3L_14720001	RAL-336
357	chr3L	15899232	15899260	chr3L	15899793	15899803	jockey	4	559	2.0	4.5	3.2	1.0	571	chr3L	15899232	intergenic	pHCl -	chr3L	15899518	intergenic	pHCl -	chr3L	15899803	intergenic	sff -	chr3L_4_15895001	chr3L_15895001	RAL-336
358	chr3L	16184088	16184109	chr3L	16188932	16188952	X-element	11	4843	2.5	3.0	2.8	2.9	4864	chr3L	16184088	intergenic	not near genes	chr3L	16186520	intergenic	not near genes	chr3L	16188952	intergenic	not near genes	chr3L_11_16185001	chr3L_16185001	RAL-336
361	chr3L	16493976	16494011	chr3L	16494493	16494525	jockey	12	512	7.0	4.5	5.8	1.8	549	chr3L	16493976	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494250	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494525	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L_12_16490001	chr3L_16490001	RAL-336
362	chr3L	16616508	16616538	chr3L	16621836	16621847	297	8	5325	3.0	1.0	2.0	2.7	5339	chr3L	16616508	3` UTR	Abl -	chr3L	16619178	3` UTR	Abl -	chr3L	16621847	3` UTR	Abl -	chr3L_8_16615001	chr3L_16615001	RAL-336
364	chr3L	16945735	16945756	chr3L	16954886	16954890	roo	4	9146	2.0	0.5	1.2	1.8	9155	chr3L	16945735	exon	Obp73a +	chr3L	16950312	intergenic	not near genes	chr3L	16954890	5` UTR	Nc73EF +	chr3L_4_16950001	chr3L_16950001	RAL-336
367	chr3L	17516982	17517007	chr3L	17524540	17524564	412	4	7556	3.5	3.0	3.2	1.0	7582	chr3L	17516982	intron	CG7564 +	chr3L	17520773	intron	CG7564 +	chr3L	17524564	3` UTR	CG7564 +	chr3L_4_17520001	chr3L_17520001	RAL-336
369	chr3L	17730861	17730881	chr3L	17738191	17738210	mdg1	8	7329	0.5	1.5	1.0	4.0	7349	chr3L	17730861	intron	Ccn +	chr3L	17734536	intron	Ccn +	chr3L	17738210	intron	Ccn +	chr3L_8_17730001	chr3L_17730001	RAL-336
371	chr3L	17799811	17799841	chr3L	17801597	17801625	S-element	9	1786	1.5	1.0	1.2	4.1	1814	chr3L	17799811	intron	NUCB1 -	chr3L	17800718	intron	NUCB1 -	chr3L	17801625	intron	NUCB1 -	chr3L_9_17800001	chr3L_17800001	RAL-336
377	chr3L	18528629	18528660	chr3L	18537788	18537821	roo	5	9161	2.0	0.5	1.2	2.3	9192	chr3L	18528629	intergenic	not near genes	chr3L	18533225	intergenic	not near genes	chr3L	18537821	intergenic	not near genes	chr3L_5_18530001	chr3L_18530001	RAL-336
380	chr3L	18772408	18772439	chr3L	18781089	18781120	roo	9	8680	2.0	4.5	3.2	2.1	8712	chr3L	18772408	intron	ftz-f1 -	chr3L	18776764	intron	ftz-f1 -	chr3L	18781120	intron	ftz-f1 -	chr3L_9_18775001	chr3L_18775001	RAL-336
383	chr3L	19008851	19008872	chr3L	19009187	19009205	jockey	4	336	1.5	1.0	1.2	1.8	354	chr3L	19008851	intron	nkd -	chr3L	19009028	intron	nkd -	chr3L	19009205	intron	nkd -	chr3L_4_19005001	chr3L_19005001	RAL-336
385	chr3L	19117051	19117075	chr3L	19124498	19124521	mdg1	5	7444	2.5	3.5	3.0	1.2	7470	chr3L	19117051	intron	CG14082 -	chr3L	19120786	intron	CG14082 -	chr3L	19124521	intron	CG14082 -	chr3L_5_19120001	chr3L_19120001	RAL-336
391	chr3L	19820302	19820311	chr3L	19827849	19827860	412	4	7548	2.5	1.5	2.0	1.3	7558	chr3L	19820302	intron	Deaf1 +	chr3L	19824081	intron	Deaf1 +	chr3L	19827860	intron	Deaf1 +	chr3L_4_19820001	chr3L_19820001	RAL-336
392	chr3L	19848505	19848521	chr3L	19857695	19857711	roo	4	9190	3.5	3.0	3.2	1.0	9206	chr3L	19848505	intron	Papss +	chr3L	19853108	intron	Papss +	chr3L	19857711	intron	Papss +	chr3L_4_19850001	chr3L_19850001	RAL-336
400	chr3L	21014918	21014946	chr3L	21023398	21023401	Tirant	4	8471	2.5	2.0	2.2	1.2	8483	chr3L	21014918	intron	skd -	chr3L	21019160	intron	skd -	chr3L	21023401	intron	skd -	chr3L_4_21015001	chr3L_21015001	RAL-336
403	chr3L	21243751	21243771	chr3L	21251314	21251326	412	4	7557	2.5	3.0	2.8	1.1	7575	chr3L	21243751	intron	Eip78C +	chr3L	21247538	intron	Eip78C +	chr3L	21251326	intron	Eip78C +	chr3L_4_21245001	chr3L_21245001	RAL-336
405	chr3L	21306145	21306179	chr3L	21315304	21315338	roo	5	9159	1.0	0.5	0.8	2.8	9193	chr3L	21306145	3` UTR,3` UTR	CG7632 +,Pc -	chr3L	21310742	intron	Pc -	chr3L	21315338	3` UTR	Pc -	chr3L_5_21310001	chr3L_21310001	RAL-336
413	chr3L	22099674	22099704	chr3L	22105860	22105890	3S18	8	6185	5.5	2.0	3.8	1.7	6216	chr3L	22099674	intergenic	not near genes	chr3L	22102782	intergenic	not near genes	chr3L	22105890	intergenic	not near genes	chr3L_8_22100001	chr3L_22100001	RAL-336
430	chr3R	4366755	4366788	chr3R	4375138	4375171	roo	4	8383	2.5	0.5	1.5	1.6	8416	chr3R	4366755	3` UTR	CG1090 +	chr3R	4370963	intergenic	not near genes	chr3R	4375171	5` UTR	CR44922 +	chr3R_4_4370001	chr3R_4370001	RAL-336
431	chr3R	4408420	4408438	chr3R	4412724	4412736	Juan	5	4302	1.5	3.5	2.5	1.4	4316	chr3R	4408420	intron	CG32944 -	chr3R	4410578	intron	CG32944 -	chr3R	4412736	intron	CG32944 -	chr3R_5_4410001	chr3R_4410001	RAL-336
433	chr3R	4887485	4887504	chr3R	4894861	4894872	rover	5	7374	1.5	3.5	2.5	1.4	7387	chr3R	4887485	intergenic	not near genes	chr3R	4891178	intergenic	not near genes	chr3R	4894872	intergenic	not near genes	chr3R_5_4890001	chr3R_4890001	RAL-336
434	chr3R	5067981	5068010	chr3R	5073498	5073527	mdg3	7	5513	1.0	1.5	1.2	3.2	5546	chr3R	5067981	intergenic	not near genes	chr3R	5070754	intergenic	not near genes	chr3R	5073527	intergenic	not near genes	chr3R_7_5070001	chr3R_5070001	RAL-336
438	chr3R	5809127	5809144	chr3R	5809368	5809385	pogo	5	239	1.0	3.0	2.0	1.7	258	chr3R	5809127	3` UTR	CG11000 +	chr3R	5809256	3` UTR	CG11000 +	chr3R	5809385	3` UTR	CG11000 +	chr3R_5_5805001	chr3R_5805001	RAL-336
440	chr3R	6158517	6158539	chr3R	6167099	6167120	Tirant	5	8582	2.5	3.5	3.0	1.2	8603	chr3R	6158517	intergenic	not near genes	chr3R	6162818	intergenic	not near genes	chr3R	6167120	intergenic	CG1077 +	chr3R_5_6160001	chr3R_6160001	RAL-336
441	chr3R	6175176	6175207	chr3R	6182447	6182463	HMS-Beagle2	4	7268	1.0	1.5	1.2	1.8	7287	chr3R	6175176	intergenic	Osi1 +	chr3R	6178820	intron	CR45194 +	chr3R	6182463	intergenic	CR45194 +	chr3R_4_6175001	chr3R_6175001	RAL-336
443	chr3R	6737502	6737532	chr3R	6739289	6739305	Doc	6	1784	4.0	2.0	3.0	1.5	1803	chr3R	6737502	intron	pb -	chr3R	6738404	intron	pb -	chr3R	6739305	intron	pb -	chr3R_6_6735001	chr3R_6735001	RAL-336
447	chr3R	7694575	7694590	chr3R	7713636	7713651	invader3	4	19061	1.5	1.5	1.5	1.6	19076	chr3R	7694575	3` UTR	Nlg1 +	chr3R	7704113	intergenic	not near genes	chr3R	7713651	intergenic	not near genes	chr3R_4_7700001	chr3R_7700001	RAL-336
450	chr3R	8101768	8101791	chr3R	8104852	8104875	G2	5	3083	0.0	0.5	0.2	4.2	3107	chr3R	8101768	exon	CG7900 +	chr3R	8103322	intron	CG7900 +	chr3R	8104875	3` UTR	CG7900 +	chr3R_5_8100001	chr3R_8100001	RAL-336
453	chr3R	8403020	8403036	chr3R	8412180	8412199	roo	4	9160	0.5	2.5	1.5	1.6	9179	chr3R	8403020	intron	CG45263 -	chr3R	8407610	intron	CG45263 -	chr3R	8412199	intron	CG45263 -	chr3R_4_8405001	chr3R_8405001	RAL-336
455	chr3R	8570482	8570508	chr3R	8575117	8575118	HMS-Beagle	5	4631	2.0	1.0	1.5	2.0	4636	chr3R	8570482	intergenic	not near genes	chr3R	8572800	intergenic	not near genes	chr3R	8575118	intergenic	not near genes	chr3R_5_8570001	chr3R_8570001	RAL-336
457	chr3R	9361823	9361839	chr3R	9362064	9362078	pogo	4	240	0.5	1.5	1.0	2.0	255	chr3R	9361823	3` UTR	CG45050 +	chr3R	9361950	3` UTR	CG45050 +	chr3R	9362078	3` UTR	CG45050 +	chr3R_4_9360001	chr3R_9360001	RAL-336
485	chr3R	14246399	14246413	chr3R	14247887	14247892	jockey	4	1480	0.5	2.0	1.2	1.8	1493	chr3R	14246399	intergenic	not near genes	chr3R	14247146	intergenic	not near genes	chr3R	14247892	intergenic	not near genes	chr3R_4_14245001	chr3R_14245001	RAL-336
505	chr3R	17346695	17346718	chr3R	17348258	17348281	F-element	4	1562	0.5	1.0	0.8	2.2	1586	chr3R	17346695	intron	beat-IIa -	chr3R	17347488	intron	beat-IIa -	chr3R	17348281	intron	beat-IIa -	chr3R_4_17345001	chr3R_17345001	RAL-336
521	chr3R	20109541	20109570	chr3R	20114745	20114776	copia	5	5205	1.5	1.5	1.5	2.0	5235	chr3R	20109541	intergenic	not near genes	chr3R	20112158	intergenic	not near genes	chr3R	20114776	intergenic	CG10887 +	chr3R_5_20110001	chr3R_20110001	RAL-336
522	chr3R	20266519	20266547	chr3R	20272990	20273018	Burdock	9	6470	2.0	2.0	2.0	3.0	6499	chr3R	20266519	intron	cic +	chr3R	20269768	intron	cic +	chr3R	20273018	intron	cic +	chr3R_9_20265001	chr3R_20265001	RAL-336
526	chr3R	20506612	20506616	chr3R	20507398	20507418	BS	4	798	1.5	2.5	2.0	1.3	806	chr3R	20506612	intergenic	Or92a +	chr3R	20507015	intergenic	CG4288 -	chr3R	20507418	3` UTR	CG4288 -	chr3R_4_20505001	chr3R_20505001	RAL-336
527	chr3R	20513013	20513036	chr3R	20515713	20515739	opus	5	2702	1.0	1.0	1.0	2.5	2726	chr3R	20513013	intergenic	not near genes	chr3R	20514376	intergenic	not near genes	chr3R	20515739	intergenic	not near genes	chr3R_5_20510001	chr3R_20510001	RAL-336
540	chr3R	21761138	21761151	chr3R	21768515	21768519	mdg1	4	7374	1.0	2.0	1.5	1.6	7381	chr3R	21761138	exon	CG42335 +	chr3R	21764828	intron	CG42335 +	chr3R	21768519	exon	CG42335 +	chr3R_4_21760001	chr3R_21760001	RAL-336
553	chr3R	22450548	22450577	chr3R	22453179	22453217	NOF	5	2638	1.0	3.5	2.2	1.6	2669	chr3R	22450548	intron	CG34376 +	chr3R	22451882	intron	CG34376 +	chr3R	22453217	intron	CG34376 +	chr3R_5_22450001	chr3R_22450001	RAL-336
562	chr3R	23684716	23684729	chr3R	23685186	23685195	roo	4	469	1.0	5.0	3.0	1.0	479	chr3R	23684716	intron	CG18754 +	chr3R	23684956	intron	CG18754 +	chr3R	23685195	exon	CG18754 +	chr3R_4_23680001	chr3R_23680001	RAL-336
565	chr3R	24072088	24072103	chr3R	24072521	24072537	jockey	9	437	10.5	0.0	5.2	1.5	449	chr3R	24072088	intron	4EHP -	chr3R	24072312	intron	4EHP -	chr3R	24072537	intron	4EHP -	chr3R_9_24070001	chr3R_24070001	RAL-336
569	chr3R	24493280	24493301	chr3R	24493509	24493530	BS	4	229	1.0	1.5	1.2	1.8	250	chr3R	24493280	intergenic	not near genes	chr3R	24493405	intergenic	not near genes	chr3R	24493530	intergenic	not near genes	chr3R_4_24490001	chr3R_24490001	RAL-336
575	chr3R	24927126	24927155	chr3R	24931916	24931946	Doc	6	4788	6.5	5.5	6.0	0.9	4820	chr3R	24927126	intergenic	Trf4-2 +	chr3R	24929536	intergenic	not near genes	chr3R	24931946	intergenic	CG11771 +	chr3R_6_24925001	chr3R_24925001	RAL-336
579	chr3R	25832707	25832721	chr3R	25841884	25841895	roo	4	9178	2.0	2.5	2.2	1.2	9188	chr3R	25832707	exon	alpha4GT2 +	chr3R	25837301	intron	alpha4GT2 +	chr3R	25841895	exon	alpha4GT2 +	chr3R_4_25835001	chr3R_25835001	RAL-336
582	chr3R	26376329	26376356	chr3R	26385488	26385514	roo	6	9159	0.0	1.0	0.5	4.0	9185	chr3R	26376329	intergenic	not near genes	chr3R	26380922	intergenic	not near genes	chr3R	26385514	intergenic	not near genes	chr3R_6_26380001	chr3R_26380001	RAL-336
583	chr3R	26558328	26558357	chr3R	26565639	26565644	Stalker4	4	7302	1.5	1.5	1.5	1.6	7316	chr3R	26558328	intron	scrib +	chr3R	26561986	intron	scrib +	chr3R	26565644	intron	scrib +	chr3R_4_26560001	chr3R_26560001	RAL-336
584	chr3R	26642734	26642760	chr3R	26643124	26643154	jockey	7	393	3.0	2.5	2.8	1.8	420	chr3R	26642734	intergenic	not near genes	chr3R	26642944	intergenic	not near genes	chr3R	26643154	intergenic	not near genes	chr3R_7_26640001	chr3R_26640001	RAL-336
590	chr3R	27140513	27140548	chr3R	27148123	27148158	412	12	7610	1.5	0.0	0.8	6.7	7645	chr3R	27140513	intron	CG6051 -	chr3R	27144336	intron	CG6051 -	chr3R	27148158	intron	CG6051 -	chr3R_12_27140001	chr3R_27140001	RAL-336
597	chr3R	27342796	27342822	chr3R	27351377	27351403	Tirant	7	8580	0.5	1.0	0.8	3.9	8607	chr3R	27342796	intron	CG42534 +	chr3R	27347100	intron	CG42534 +	chr3R	27351403	intron	CG42534 +	chr3R_7_27345001	chr3R_27345001	RAL-336
602	chr3R	28173671	28173684	chr3R	28181101	28181114	mdg1	4	7430	3.0	2.0	2.5	1.1	7443	chr3R	28173671	intron	CG34354 +	chr3R	28177392	intron	CG34354 +	chr3R	28181114	intron	CG34354 +	chr3R_4_28175001	chr3R_28175001	RAL-336
603	chr3R	28253345	28253358	chr3R	28255854	28255868	jockey	4	2510	2.5	3.0	2.8	1.1	2523	chr3R	28253345	intergenic	not near genes	chr3R	28254606	intergenic	not near genes	chr3R	28255868	intergenic	not near genes	chr3R_4_28250001	chr3R_28250001	RAL-336
613	chr3R	28792871	28792896	chr3R	28797965	28797973	jockey	4	5088	0.5	1.0	0.8	2.2	5102	chr3R	28792871	intergenic	not near genes	chr3R	28795422	intergenic	not near genes	chr3R	28797973	intergenic	not near genes	chr3R_4_28795001	chr3R_28795001	RAL-336
618	chr3R	29319822	29319848	chr3R	29320141	29320164	jockey	5	318	1.0	1.5	1.2	2.3	342	chr3R	29319822	intergenic	Cnx99A -	chr3R	29319993	intergenic	Cnx99A -	chr3R	29320164	intergenic	not near genes	chr3R_5_29315001	chr3R_29315001	RAL-336
620	chr3R	29406614	29406643	chr3R	29407900	29407918	jockey	9	1280	4.5	2.5	3.5	2.0	1304	chr3R	29406614	intron	Ptp99A +	chr3R	29407266	intron	Ptp99A +	chr3R	29407918	intron	Ptp99A +	chr3R_9_29405001	chr3R_29405001	RAL-336
625	chr3R	29738280	29738296	chr3R	29739744	29739763	hobo	5	1466	1.5	2.0	1.8	1.8	1483	chr3R	29738280	5` UTR	CG1969 +	chr3R	29739022	intron	CG1969 +	chr3R	29739763	5` UTR	CG1969 +	chr3R_5_29735001	chr3R_29735001	RAL-336
627	chr3R	29882021	29882041	chr3R	29891178	29891197	roo	4	9157	3.0	2.0	2.5	1.1	9176	chr3R	29882021	intron	CG31038 +	chr3R	29886609	intron	CG31038 +	chr3R	29891197	intron	CG31038 +	chr3R_4_29885001	chr3R_29885001	RAL-336
634	chr3R	30238765	30238776	chr3R	30239929	30239940	1360	4	1164	3.0	0.5	1.8	1.4	1175	chr3R	30238765	intergenic	not near genes	chr3R	30239352	intergenic	not near genes	chr3R	30239940	intergenic	not near genes	chr3R_4_30235001	chr3R_30235001	RAL-336
637	chr3R	30480477	30480510	chr3R	30482945	30482978	jockey	5	2468	2.5	4.0	3.2	1.2	2501	chr3R	30480477	intron	PH4alphaEFB +	chr3R	30481728	intron	PH4alphaEFB +	chr3R	30482978	intron	PH4alphaEFB +	chr3R_5_30480001	chr3R_30480001	RAL-336
640	chr3R	30679528	30679548	chr3R	30686996	30687017	blood	4	7468	3.0	3.5	3.2	1.0	7489	chr3R	30679528	intergenic	not near genes	chr3R	30683272	intergenic	not near genes	chr3R	30687017	intergenic	not near genes	chr3R_4_30680001	chr3R_30680001	RAL-336
641	chr3R	30818813	30818844	chr3R	30820377	30820407	1360	9	1564	3.5	4.0	3.8	1.9	1594	chr3R	30818813	intron	cindr +	chr3R	30819610	intron	cindr +	chr3R	30820407	intron	cindr +	chr3R_9_30815001	chr3R_30815001	RAL-336
643	chr3R	31074230	31074259	chr3R	31081828	31081857	springer	4	7598	4.5	3.5	4.0	0.8	7627	chr3R	31074230	intron	Sox100B +	chr3R	31078044	intron	Sox100B +	chr3R	31081857	intron	Sox100B +	chr3R_4_31075001	chr3R_31075001	RAL-336
644	chr3R	31413092	31413102	chr3R	31418292	31418302	copia	4	5200	0.5	0.0	0.2	3.3	5210	chr3R	31413092	intron	Gprk2 +	chr3R	31415697	intron	Gprk2 +	chr3R	31418302	intron	Gprk2 +	chr3R_4_31415001	chr3R_31415001	RAL-336
646	chr3R	31691553	31691564	chr3R	31696317	31696322	Doc	5	4764	2.5	4.5	3.5	1.1	4769	chr3R	31691553	intergenic	not near genes	chr3R	31693938	intergenic	not near genes	chr3R	31696322	intergenic	not near genes	chr3R_5_31690001	chr3R_31690001	RAL-336
651	chrX	827602	827634	chrX	835391	835411	roo	5	7788	0.0	0.0	0.0	5.0	7809	chrX	827602	intron	CG43867 -	chrX	831506	intron	CG43867 -	chrX	835411	intron	CG43867 -	chrX_5_830001	chrX_830001	RAL-336
654	chrX	1357780	1357807	chrX	1367950	1367977	Doc	4	10170	2.0	2.5	2.2	1.2	10197	chrX	1357780	intergenic	png -	chrX	1362878	intergenic	not near genes	chrX	1367977	intergenic	not near genes	chrX_4_1360001	chrX_1360001	RAL-336
656	chrX	1627989	1628001	chrX	1635441	1635465	gtwin	5	7464	2.0	7.0	4.5	0.9	7476	chrX	1627989	intron,intron	Mur2B -,br +	chrX	1631727	intron,intron	Mur2B -,br +	chrX	1635465	intron,intron	Mur2B -,br +	chrX_5_1630001	chrX_1630001	RAL-336
658	chrX	1930543	1930567	chrX	1938110	1938137	opus	4	7569	1.0	1.0	1.0	2.0	7594	chrX	1930543	intergenic	CG11596 +	chrX	1934340	intergenic	not near genes	chrX	1938137	3` UTR	CG3857 -	chrX_4_1930001	chrX_1930001	RAL-336
663	chrX	2610386	2610390	chrX	2617503	2617507	HMS-Beagle	4	7117	5.0	1.5	3.2	1.0	7121	chrX	2610386	intergenic	CG8636 -	chrX	2613946	intergenic	not near genes	chrX	2617507	intergenic	Tsp3A -	chrX_4_2610001	chrX_2610001	RAL-336
667	chrX	4792386	4792404	chrX	4792811	4792835	jockey	5	430	1.5	0.5	1.0	2.5	449	chrX	4792386	intergenic	not near genes	chrX	4792610	intergenic	not near genes	chrX	4792835	intergenic	not near genes	chrX_5_4790001	chrX_4790001	RAL-336
668	chrX	1562991	1562991	chrX	4805477	4805477	opus	4	3242486	17.5	7.0	12.2	0.3	3242486	chrX	1562991	intron	Mur2B -	chrX	3184234	intron	dnc +	chrX	4805477	3` UTR	CR45516 -	chrX_4_3180001	chrX_3180001	RAL-336
669	chrX	4827980	4828002	chrX	4835351	4835372	Stalker4	5	7368	1.0	0.5	0.8	2.8	7392	chrX	4827980	intergenic	not near genes	chrX	4831676	intergenic	not near genes	chrX	4835372	intergenic	not near genes	chrX_5_4830001	chrX_4830001	RAL-336
670	chrX	5096289	5096306	chrX	5103854	5103871	springer	4	7565	2.5	2.0	2.2	1.2	7582	chrX	5096289	intron,intron	CG15465 +,rg +	chrX	5100080	intron,intron	CG15465 +,rg +	chrX	5103871	intron,intron	CG15465 +,rg +	chrX_4_5100001	chrX_5100001	RAL-336
674	chrX	6171582	6171609	chrX	6179015	6179042	Quasimodo	9	7433	2.5	2.0	2.2	2.8	7460	chrX	6171582	intron	Ca-alpha1T -	chrX	6175312	intron	Ca-alpha1T -	chrX	6179042	intron	Ca-alpha1T -	chrX_9_6175001	chrX_6175001	RAL-336
677	chrX	6562818	6562848	chrX	6571300	6571330	Tirant	7	8482	1.5	3.0	2.2	2.2	8512	chrX	6562818	intron	CG34417 +	chrX	6567074	intron	CG34417 +	chrX	6571330	intron	CG34417 +	chrX_7_6565001	chrX_6565001	RAL-336
683	chrX	8364860	8364879	chrX	8365240	8365276	BS	5	391	1.5	1.0	1.2	2.3	416	chrX	8364860	intron	nAChRalpha3 -	chrX	8365068	intron	nAChRalpha3 -	chrX	8365276	intron	nAChRalpha3 -	chrX_5_8365001	chrX_8365001	RAL-336
684	chrX	8922337	8922346	chrX	8922767	8922779	jockey	5	433	2.0	3.0	2.5	1.4	442	chrX	8922337	intron	rdgA +	chrX	8922558	intron	rdgA +	chrX	8922779	intron	rdgA +	chrX_5_8920001	chrX_8920001	RAL-336
689	chrX	10138221	10138232	chrX	10145724	10145736	412	5	7504	2.0	1.0	1.5	2.0	7515	chrX	10138221	intron,intron	RhoU +,CR44894 -	chrX	10141978	intron,intron	RhoU +,CR44894 -	chrX	10145736	intron,intron	RhoU +,CR44894 -	chrX_5_10140001	chrX_10140001	RAL-336
691	chrX	10550855	10550875	chrX	10552321	10552342	hobo	6	1463	2.5	0.5	1.5	2.4	1487	chrX	10550855	intron	spri -	chrX	10551598	intron	spri -	chrX	10552342	intron	spri -	chrX_6_10550001	chrX_10550001	RAL-336
692	chrX	11095999	11096028	chrX	11103101	11103130	HMS-Beagle	4	7102	0.5	3.5	2.0	1.3	7131	chrX	11095999	intergenic	not near genes	chrX	11099564	intergenic	not near genes	chrX	11103130	intron	CG42249 +	chrX_4_11095001	chrX_11095001	RAL-336
702	chrX	14105027	14105051	chrX	14114177	14114201	roo	5	9146	4.5	3.0	3.8	1.0	9174	chrX	14105027	intergenic	not near genes	chrX	14109614	intergenic	not near genes	chrX	14114201	5` UTR	CR44657 +	chrX_5_14105001	chrX_14105001	RAL-336
705	chrX	14778037	14778040	chrX	14782822	14782837	Doc	5	4795	3.5	2.0	2.8	1.3	4800	chrX	14778037	intergenic	CG5347 +	chrX	14780437	intergenic	not near genes	chrX	14782837	intergenic	Ag5r2 -	chrX_5_14780001	chrX_14780001	RAL-336
706	chrX	14818776	14818796	chrX	14823980	14823999	copia	4	5202	1.0	0.0	0.5	2.7	5223	chrX	14818776	intron	rut -	chrX	14821388	intron	rut -	chrX	14823999	intron	rut -	chrX_4_14820001	chrX_14820001	RAL-336
707	chrX	14936857	14936879	chrX	14946114	14946136	roo	5	9256	2.0	0.5	1.2	2.3	9279	chrX	14936857	intron	pdgy -	chrX	14941496	intron	pdgy -	chrX	14946136	intron	pdgy -	chrX_5_14940001	chrX_14940001	RAL-336
722	chrX	19060407	19060424	chrX	19065191	19065200	Doc	4	4782	3.0	2.5	2.8	1.1	4793	chrX	19060407	intron	CG14190 +	chrX	19062804	intron	CG14190 +	chrX	19065200	intron	CG14190 +	chrX_4_19060001	chrX_19060001	RAL-336
723	chrX	19136553	19136584	chrX	19143473	19143503	412	4	6919	1.5	3.5	2.5	1.1	6950	chrX	19136553	intergenic	not near genes	chrX	19140028	intergenic	not near genes	chrX	19143503	3` UTR	RhoGAP18B -	chrX_4_19140001	chrX_19140001	RAL-336
738	chrX	20377337	20377348	chrX	20378802	20378815	hobo	5	1465	1.0	3.5	2.2	1.6	1478	chrX	20377337	intergenic	not near genes	chrX	20378076	intergenic	not near genes	chrX	20378815	intergenic	not near genes	chrX_5_20375001	chrX_20375001	RAL-336
743	chrX	20940720	20940756	chrX	20942187	20942224	hobo	6	1466	2.0	1.0	1.5	2.4	1504	chrX	20940720	intergenic	not near genes	chrX	20941472	intergenic	not near genes	chrX	20942224	intergenic	not near genes	chrX_6_20940001	chrX_20940001	RAL-336
748	chrX	21458697	21458731	chrX	21464133	21464167	Ivk	8	5436	0.5	0.0	0.2	6.7	5470	chrX	21458697	intergenic	not near genes	chrX	21461432	intergenic	not near genes	chrX	21464167	intergenic	not near genes	chrX_8_21460001	chrX_21460001	RAL-336
749	chrX	21474407	21474426	chrX	21474773	21474791	1731	7	365	4.0	4.0	4.0	1.4	384	chrX	21474407	intergenic	not near genes	chrX	21474599	intergenic	not near genes	chrX	21474791	intergenic	not near genes	chrX_7_21470001	chrX_21470001	RAL-336
753	chrX	22996330	22996338	chrX	23003547	23003570	roo	4	7228	2.0	3.0	2.5	1.1	7240	chrX	22996330	intron,intron	stnA -,stnB -	chrX	22999950	intron,intron	stnA -,stnB -	chrX	23003570	intron,intron	stnA -,stnB -	chrX_4_22995001	chrX_22995001	RAL-336