SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 748210 748233 chr2L 748287 748312 4 78 5.5 5.5 5.5 0.6 102 chr2L 748210 intergenic not near genes chr2L 748261 intergenic not near genes chr2L 748312 intergenic not near genes chr2L_4_745001 chr2L_745001 RAL-336 2 chr2L 763606 763629 chr2L 763682 763705 4 75 4.0 2.5 3.2 1.0 99 chr2L 763606 intergenic not near genes chr2L 763656 intergenic not near genes chr2L 763705 intergenic not near genes chr2L_4_760001 chr2L_760001 RAL-336 3 chr2L 853321 853352 chr2L 853407 853438 5 86 7.5 9.5 8.5 0.5 117 chr2L 853321 intron kraken + chr2L 853380 intron kraken + chr2L 853438 intron kraken + chr2L_5_850001 chr2L_850001 RAL-336 4 chr2L 935383 935399 chr2L 935466 935482 4 84 4.0 3.0 3.5 0.9 99 chr2L 935383 intron CG4341 + chr2L 935432 intron CG4341 + chr2L 935482 intron CG4341 + chr2L_4_935001 chr2L_935001 RAL-336 5 chr2L 1035570 1035593 chr2L 1035647 1035669 5 77 7.5 2.5 5.0 0.8 99 chr2L 1035570 intron IA-2 - chr2L 1035620 intron IA-2 - chr2L 1035669 intron IA-2 - chr2L_5_1035001 chr2L_1035001 RAL-336 6 chr2L 1215547 1215576 chr2L 1215623 1215633 8 72 4.0 3.5 3.8 1.7 86 chr2L 1215547 intergenic CR45346 - chr2L 1215590 intergenic CR45346 - chr2L 1215633 intergenic CR45346 - chr2L_8_1215001 chr2L_1215001 RAL-336 7 chr2L 1220136 1220151 chr2L 1227601 1227617 blood 4 7465 2.0 1.0 1.5 1.6 7481 chr2L 1220136 intron CG42329 + chr2L 1223876 intron CG42329 + chr2L 1227617 intron CG42329 + chr2L_4_1220001 chr2L_1220001 RAL-336 8 chr2L 1454054 1454063 chr2L 1454128 1454142 4 78 6.0 5.0 5.5 0.6 88 chr2L 1454054 intergenic not near genes chr2L 1454098 intergenic not near genes chr2L 1454142 intergenic not near genes chr2L_4_1450001 chr2L_1450001 RAL-336 9 chr2L 1711361 1711385 chr2L 1711681 1711709 mdg3 4 319 4.5 5.5 5.0 0.7 348 chr2L 1711361 3` UTR,3` UTR mRpL48 +,frtz - chr2L 1711535 3` UTR frtz - chr2L 1711709 3` UTR frtz - chr2L_4_1710001 chr2L_1710001 RAL-336 10 chr2L 1724807 1724832 chr2L 1724889 1724914 4 82 6.0 7.5 6.8 0.5 107 chr2L 1724807 3` UTR Eno - chr2L 1724860 3` UTR Eno - chr2L 1724914 3` UTR Eno - chr2L_4_1720001 chr2L_1720001 RAL-336 11 chr2L 2112122 2112146 chr2L 2119784 2119807 opus 5 7661 2.0 1.5 1.8 1.8 7685 chr2L 2112122 intergenic not near genes chr2L 2115964 intergenic not near genes chr2L 2119807 intergenic not near genes chr2L_5_2115001 chr2L_2115001 RAL-336 12 chr2L 2311073 2311086 chr2L 2311169 2311182 5 96 1.5 0.0 0.8 2.8 109 chr2L 2311073 intron CG9967 - chr2L 2311128 intron CG9967 - chr2L 2311182 intron CG9967 - chr2L_5_2310001 chr2L_2310001 RAL-336 13 chr2L 2552737 2552770 chr2L 2552817 2552850 7 80 8.5 6.5 7.5 0.8 113 chr2L 2552737 exon CG3515 - chr2L 2552794 5` UTR CG3515 - chr2L 2552850 intergenic CG3515 - chr2L_7_2550001 chr2L_2550001 RAL-336 14 chr2L 2713521 2713545 chr2L 2713620 2713644 6 95 5.5 4.0 4.8 1.0 123 chr2L 2713521 intron CG31690 + chr2L 2713582 intron CG31690 + chr2L 2713644 intron CG31690 + chr2L_6_2710001 chr2L_2710001 RAL-336 15 chr2L 3073045 3073061 chr2L 3078248 3078264 copia 5 5203 1.0 3.0 2.0 1.7 5219 chr2L 3073045 intron toc - chr2L 3075654 intron toc - chr2L 3078264 intron toc - chr2L_5_3075001 chr2L_3075001 RAL-336 16 chr2L 3147277 3147302 chr2L 3147354 3147378 5 76 10.0 7.5 8.8 0.5 101 chr2L 3147277 3` UTR Mad - chr2L 3147328 3` UTR Mad - chr2L 3147378 3` UTR Mad - chr2L_5_3145001 chr2L_3145001 RAL-336 17 chr2L 3192208 3192236 chr2L 3192319 3192346 8 110 1.5 1.5 1.5 3.2 138 chr2L 3192208 exon CG34393 - chr2L 3192277 intron CG34393 - chr2L 3192346 intron CG34393 - chr2L_8_3190001 chr2L_3190001 RAL-336 18 chr2L 3395027 3395039 chr2L 3395109 3395114 4 80 2.5 3.0 2.8 1.1 87 chr2L 3395027 intergenic not near genes chr2L 3395070 intergenic not near genes chr2L 3395114 intergenic not near genes chr2L_4_3395001 chr2L_3395001 RAL-336 19 chr2L 3839434 3839442 chr2L 3839590 3839599 4 157 2.5 5.0 3.8 0.8 165 chr2L 3839434 intergenic slp2 + chr2L 3839516 intergenic slp2 + chr2L 3839599 intergenic slp2 + chr2L_4_3835001 chr2L_3835001 RAL-336 20 chr2L 3915532 3915547 chr2L 3916328 3916330 4 794 5.5 4.5 5.0 0.7 798 chr2L 3915532 intron fred - chr2L 3915931 intron fred - chr2L 3916330 intron fred - chr2L_4_3915001 chr2L_3915001 RAL-336 21 chr2L 4008273 4008300 chr2L 4008356 4008385 8 83 1.0 1.5 1.2 3.6 112 chr2L 4008273 intergenic CG43773 +,CG43774 + chr2L 4008329 intergenic CG43774 +,CG43773 + chr2L 4008385 intergenic CG43774 +,CG43773 + chr2L_8_4005001 chr2L_4005001 RAL-336 22 chr2L 4598621 4598639 chr2L 4601447 4601464 4 2826 8.5 12.5 10.5 0.3 2843 chr2L 4598621 intron dp - chr2L 4600042 intron dp - chr2L 4601464 intron dp - chr2L_4_4600001 chr2L_4600001 RAL-336 23 chr2L 4601705 4601726 chr2L 4609146 4609165 mdg1 4 7440 2.5 2.0 2.2 1.2 7460 chr2L 4601705 intron dp - chr2L 4605435 intron dp - chr2L 4609165 intron dp - chr2L_4_4605001 chr2L_4605001 RAL-336 24 chr2L 5242935 5242937 chr2L 16217660 16217660 12 10974724 6.0 19.0 12.5 0.9 10974725 chr2L 5242935 intron tkv - chr2L 10730298 3` UTR,5` UTR CG6443 +,CG17118 + chr2L 16217660 intergenic not near genes chr2L_12_10730001 chr2L_10730001 RAL-336 25 chr2L 5378448 5378453 chr2L 5378527 5378532 4 79 3.0 3.0 3.0 1.0 84 chr2L 5378448 intergenic not near genes chr2L 5378490 intergenic not near genes chr2L 5378532 intergenic not near genes chr2L_4_5375001 chr2L_5375001 RAL-336 26 chr2L 5895591 5895602 chr2L 5895700 5895703 4 111 3.5 6.5 5.0 0.7 112 chr2L 5895591 intergenic not near genes chr2L 5895647 intergenic not near genes chr2L 5895703 intergenic not near genes chr2L_4_5895001 chr2L_5895001 RAL-336 27 chr2L 5981072 5981085 chr2L 5981197 5981217 6 131 8.0 7.0 7.5 0.7 145 chr2L 5981072 intergenic chic - chr2L 5981144 intergenic chic - chr2L 5981217 intergenic chic - chr2L_6_5980001 chr2L_5980001 RAL-336 28 chr2L 6021625 6021652 chr2L 6021703 6021709 5 73 10.5 7.5 9.0 0.5 84 chr2L 6021625 exon CG13996 + chr2L 6021667 exon CG13996 + chr2L 6021709 3` UTR CG13996 + chr2L_5_6020001 chr2L_6020001 RAL-336 29 chr2L 6300572 6300593 chr2L 6300654 6300675 12 84 1.0 4.0 2.5 3.4 103 chr2L 6300572 intron Ddr + chr2L 6300624 intron Ddr + chr2L 6300675 intron Ddr + chr2L_12_6300001 chr2L_6300001 RAL-336 30 chr2L 6363148 6363181 chr2L 6366070 6366107 Burdock 5 2922 0.0 1.0 0.5 3.3 2959 chr2L 6363148 intergenic not near genes chr2L 6364628 intergenic not near genes chr2L 6366107 intergenic not near genes chr2L_5_6360001 chr2L_6360001 RAL-336 31 chr2L 6426859 6426886 chr2L 6445117 6445145 roo 10 18259 3.5 2.5 3.0 2.5 18286 chr2L 6426859 3` UTR CG9527 - chr2L 6436002 intron CG9527 - chr2L 6445145 exon CG9527 - chr2L_10_6435001 chr2L_6435001 RAL-336 32 chr2L 6544373 6544392 chr2L 6544462 6544484 5 91 1.0 0.5 0.8 2.8 111 chr2L 6544373 intron eya - chr2L 6544428 intron eya - chr2L 6544484 intron eya - chr2L_5_6540001 chr2L_6540001 RAL-336 33 chr2L 6626890 6626917 chr2L 6626975 6627001 7 83 6.0 9.0 7.5 0.8 111 chr2L 6626890 intron Oatp26F - chr2L 6626946 intron Oatp26F - chr2L 6627001 intron Oatp26F - chr2L_7_6625001 chr2L_6625001 RAL-336 34 chr2L 6655526 6655546 chr2L 6655888 6655908 4 362 3.0 2.0 2.5 1.1 382 chr2L 6655526 exon CG31633 - chr2L 6655717 exon CG31633 - chr2L 6655908 exon CG31633 - chr2L_4_6655001 chr2L_6655001 RAL-336 35 chr2L 7343326 7343359 chr2L 7350442 7350475 roo 4 7116 3.0 1.5 2.2 1.2 7149 chr2L 7343326 intron Wnt6 + chr2L 7346900 intron Wnt6 + chr2L 7350475 intron Wnt6 + chr2L_4_7345001 chr2L_7345001 RAL-336 36 chr2L 7363522 7363556 chr2L 7363600 7363634 5 77 2.5 3.0 2.8 1.3 112 chr2L 7363522 5` UTR Wnt10 + chr2L 7363578 5` UTR Wnt10 + chr2L 7363634 5` UTR Wnt10 + chr2L_5_7360001 chr2L_7360001 RAL-336 37 chr2L 7867565 7867596 chr2L 7867659 7867690 4 94 3.0 0.0 1.5 1.6 125 chr2L 7867565 intron Proc - chr2L 7867628 intron Proc - chr2L 7867690 intron Proc - chr2L_4_7865001 chr2L_7865001 RAL-336 38 chr2L 7912198 7912220 chr2L 7912273 7912296 6 76 4.5 4.5 4.5 1.1 98 chr2L 7912198 intron Snoo - chr2L 7912247 intron Snoo - chr2L 7912296 intron Snoo - chr2L_6_7910001 chr2L_7910001 RAL-336 39 chr2L 7977093 7977110 chr2L 7984069 7984085 297 5 6975 1.0 3.0 2.0 1.7 6992 chr2L 7977093 intron Snoo - chr2L 7980589 intron Snoo - chr2L 7984085 intron,5` UTR Snoo -,CG7231 + chr2L_5_7980001 chr2L_7980001 RAL-336 40 chr2L 8003034 8003068 chr2L 8003116 8003150 4 82 0.5 1.5 1.0 2.0 116 chr2L 8003034 intron Wwox - chr2L 8003092 intron Wwox - chr2L 8003150 intron Wwox - chr2L_4_8000001 chr2L_8000001 RAL-336 41 chr2L 8044103 8044125 chr2L 8044176 8044204 6 78 5.0 7.0 6.0 0.9 101 chr2L 8044103 intron CG7466 + chr2L 8044154 intron CG7466 + chr2L 8044204 intron CG7466 + chr2L_6_8040001 chr2L_8040001 RAL-336 42 chr2L 8452428 8452450 chr2L 8461598 8461621 roo 6 9170 1.0 1.5 1.2 2.7 9193 chr2L 8452428 intron fu12 - chr2L 8457024 intron fu12 - chr2L 8461621 intron fu12 - chr2L_6_8455001 chr2L_8455001 RAL-336 43 chr2L 9000277 9000313 chr2L 9007787 9007819 roo 9 7509 1.5 0.5 1.0 4.5 7542 chr2L 9000277 intergenic Try29F + chr2L 9004048 intergenic not near genes chr2L 9007819 intergenic not near genes chr2L_9_9000001 chr2L_9000001 RAL-336 44 chr2L 9084336 9084340 chr2L 16217660 16217660 15 7133321 8.0 19.0 13.5 1.0 7133324 chr2L 9084336 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_15_12650001 chr2L_12650001 RAL-336 45 chr2L 9114074 9114097 chr2L 9114155 9114178 4 80 1.5 2.5 2.0 1.3 104 chr2L 9114074 intergenic not near genes chr2L 9114126 intergenic not near genes chr2L 9114178 intergenic not near genes chr2L_4_9110001 chr2L_9110001 RAL-336 46 chr2L 9251156 9251175 chr2L 9251250 9251258 6 94 2.0 7.0 4.5 1.1 102 chr2L 9251156 intergenic aust -,borr - chr2L 9251207 intergenic aust -,borr - chr2L 9251258 intergenic borr -,aust - chr2L_6_9250001 chr2L_9250001 RAL-336 47 chr2L 9303363 9303494 chr2L 9303466 9303561 7 87 3.5 1.5 2.5 2.0 198 chr2L 9303363 intergenic not near genes chr2L 9303462 intergenic not near genes chr2L 9303561 intergenic not near genes chr2L_7_9300001 chr2L_9300001 RAL-336 48 chr2L 9393500 9393526 chr2L 9396467 9396493 jockey 6 2966 0.5 1.5 1.0 3.0 2993 chr2L 9393500 intron Shawl - chr2L 9394996 intron Shawl - chr2L 9396493 intron Shawl - chr2L_6_9390001 chr2L_9390001 RAL-336 49 chr2L 9526848 9526869 chr2L 9526940 9526959 6 91 0.0 1.0 0.5 4.0 111 chr2L 9526848 intron Oatp30B + chr2L 9526904 intron Oatp30B + chr2L 9526959 intron Oatp30B + chr2L_6_9525001 chr2L_9525001 RAL-336 50 chr2L 9565849 9565879 chr2L 9565934 9565965 6 86 7.5 5.5 6.5 0.8 116 chr2L 9565849 intron jp - chr2L 9565907 intron jp - chr2L 9565965 intron jp - chr2L_6_9565001 chr2L_9565001 RAL-336 51 chr2L 9892517 9892534 chr2L 9892591 9892610 4 76 3.0 4.5 3.8 0.8 93 chr2L 9892517 intron mtDNA-helicase - chr2L 9892564 intron mtDNA-helicase - chr2L 9892610 intron mtDNA-helicase - chr2L_4_9890001 chr2L_9890001 RAL-336 52 chr2L 9973727 9973752 chr2L 9980846 9980871 HMS-Beagle 4 7119 1.0 1.0 1.0 2.0 7144 chr2L 9973727 intergenic not near genes chr2L 9977299 intergenic not near genes chr2L 9980871 intergenic not near genes chr2L_4_9975001 chr2L_9975001 RAL-336 53 chr2L 10045413 10045421 chr2L 10045493 10045500 4 80 8.5 8.5 8.5 0.4 87 chr2L 10045413 intergenic not near genes chr2L 10045456 intergenic not near genes chr2L 10045500 intergenic not near genes chr2L_4_10045001 chr2L_10045001 RAL-336 54 chr2L 10176023 10176024 chr2L 16217660 16217660 4 6041636 3.0 19.0 11.0 0.3 6041637 chr2L 10176023 intron CG44153 - chr2L 13196842 3` UTR Edem2 + chr2L 16217660 intergenic not near genes chr2L_4_13195001 chr2L_13195001 RAL-336 55 chr2L 10640651 10640672 chr2L 10640740 10640745 4 83 3.5 5.0 4.2 0.8 94 chr2L 10640651 exon CG31872 + chr2L 10640698 exon CG31872 + chr2L 10640745 exon CG31872 + chr2L_4_10640001 chr2L_10640001 RAL-336 56 chr2L 10705462 10705481 chr2L 10705543 10705563 6 80 8.5 8.0 8.2 0.7 101 chr2L 10705462 exon Lip2 - chr2L 10705512 intron Lip2 - chr2L 10705563 intron Lip2 - chr2L_6_10705001 chr2L_10705001 RAL-336 57 chr2L 11303067 11303089 chr2L 11303146 11303169 4 80 4.5 2.5 3.5 0.9 102 chr2L 11303067 intergenic not near genes chr2L 11303118 intergenic not near genes chr2L 11303169 intergenic not near genes chr2L_4_11300001 chr2L_11300001 RAL-336 58 chr2L 12131477 12131494 chr2L 12131573 12131590 5 95 8.5 5.0 6.8 0.6 113 chr2L 12131477 intron rho-6 - chr2L 12131534 intron rho-6 - chr2L 12131590 intron rho-6 - chr2L_5_12130001 chr2L_12130001 RAL-336 59 chr2L 12272171 12272193 chr2L 12272247 12272250 8 73 0.0 3.0 1.5 3.2 79 chr2L 12272171 intron aret + chr2L 12272210 intron aret + chr2L 12272250 intron aret + chr2L_8_12270001 chr2L_12270001 RAL-336 60 chr2L 12693838 12693859 chr2L 12693915 12693923 7 75 7.5 5.5 6.5 0.9 85 chr2L 12693838 exon CG6153 + chr2L 12693880 3` UTR,3` UTR CG6153 +,CG5780 - chr2L 12693923 3` UTR,3` UTR CG6153 +,CG5780 - chr2L_7_12690001 chr2L_12690001 RAL-336 61 chr2L 12739174 12739203 chr2L 12743955 12743984 Doc 8 4780 0.5 2.5 1.5 3.2 4810 chr2L 12739174 exon MRP + chr2L 12741579 intron MRP + chr2L 12743984 exon MRP + chr2L_8_12740001 chr2L_12740001 RAL-336 62 chr2L 13266379 13266403 chr2L 13266467 13266471 4 83 8.5 8.5 8.5 0.4 92 chr2L 13266379 intron CG44085 + chr2L 13266425 intron CG44085 + chr2L 13266471 intron CG44085 + chr2L_4_13265001 chr2L_13265001 RAL-336 63 chr2L 13369890 13369906 chr2L 13369989 13370003 7 108 8.0 7.0 7.5 0.8 113 chr2L 13369890 3` UTR CG31855 + chr2L 13369946 3` UTR CG31855 + chr2L 13370003 3` UTR CG31855 + chr2L_7_13365001 chr2L_13365001 RAL-336 64 chr2L 13405649 13405679 chr2L 13410446 13410476 Doc 11 4793 4.0 4.0 4.0 2.2 4827 chr2L 13405649 exon CG7110 + chr2L 13408062 intron CG7110 + chr2L 13410476 intron CG7110 + chr2L_11_13405001 chr2L_13405001 RAL-336 65 chr2L 13432996 13433014 chr2L 13433094 13433094 5 96 4.5 5.0 4.8 0.9 98 chr2L 13432996 intron CG42784 + chr2L 13433045 intron CG42784 + chr2L 13433094 intron CG42784 + chr2L_5_13430001 chr2L_13430001 RAL-336 66 chr2L 13449461 13449494 chr2L 13456897 13456930 Quasimodo 7 7436 2.0 3.0 2.5 2.0 7469 chr2L 13449461 intron,5` UTR CG42784 +,Hsp60D - chr2L 13453196 intron CG42784 + chr2L 13456930 intron CG42784 + chr2L_7_13450001 chr2L_13450001 RAL-336 67 chr2L 14135237 14135263 chr2L 14135316 14135344 8 80 3.0 0.0 1.5 3.2 107 chr2L 14135237 intron CG17341 + chr2L 14135290 intron CG17341 + chr2L 14135344 intron CG17341 + chr2L_8_14135001 chr2L_14135001 RAL-336 68 chr2L 14588382 14588411 chr2L 14588536 14588559 4 152 3.5 0.5 2.0 1.3 177 chr2L 14588382 intergenic CG42680 - chr2L 14588470 intergenic CG42680 - chr2L 14588559 intergenic CG42680 - chr2L_4_14585001 chr2L_14585001 RAL-336 69 chr2L 14840981 14841003 chr2L 14841068 14841089 5 87 1.0 2.0 1.5 2.0 108 chr2L 14840981 3` UTR CR43805 - chr2L 14841035 3` UTR CR43805 - chr2L 14841089 3` UTR CR43805 - chr2L_5_14840001 chr2L_14840001 RAL-336 70 chr2L 15053125 15053135 chr2L 15053202 15053212 7 77 0.0 2.5 1.2 3.2 87 chr2L 15053125 intron ck - chr2L 15053168 intron ck - chr2L 15053212 intron ck - chr2L_7_15050001 chr2L_15050001 RAL-336 71 chr2L 15077921 15078100 chr2L 15078008 15078188 5 83 0.0 2.0 1.0 2.5 267 chr2L 15077921 intron CG15270 + chr2L 15078054 intron CG15270 + chr2L 15078188 intron CG15270 + chr2L_5_15075001 chr2L_15075001 RAL-336 72 chr2L 15252900 15252997 chr2L 15252994 15253076 5 88 3.0 3.5 3.2 1.2 176 chr2L 15252900 intron dao + chr2L 15252988 intron dao + chr2L 15253076 intron dao + chr2L_5_15250001 chr2L_15250001 RAL-336 73 chr2L 16047857 16047883 chr2L 16047936 16047963 6 78 2.5 5.0 3.8 1.2 106 chr2L 16047857 intron,intron BicC +,CG45084 + chr2L 16047910 intron,intron BicC +,CG45084 + chr2L 16047963 exon,3` UTR BicC +,CG45084 + chr2L_6_16045001 chr2L_16045001 RAL-336 74 chr2L 16071771 16071771 chr2L 16217660 16217661 copia 22 145889 5.0 19.0 12.0 1.7 145890 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217661 intergenic not near genes chr2L_22_16140001 chr2L_16140001 RAL-336 75 chr2L 9084336 9084340 chr2L 16217660 16217660 15 7133321 8.0 19.0 13.5 1.0 7133324 chr2L 9084336 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_15_12650001 chr2L_12650001 RAL-336 76 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 15 145889 5.0 19.0 12.0 1.2 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_15_16140001 chr2L_16140001 RAL-336 77 chr2L 16280255 16280287 chr2L 16281425 16281439 1360 6 1165 0.0 2.0 1.0 3.0 1184 chr2L 16280255 intron crp - chr2L 16280847 intron crp - chr2L 16281439 intron crp - chr2L_6_16280001 chr2L_16280001 RAL-336 78 chr2L 16375390 16375549 chr2L 16375481 16375647 4 94 0.5 1.5 1.0 2.0 257 chr2L 16375390 intergenic not near genes chr2L 16375518 intergenic not near genes chr2L 16375647 intergenic not near genes chr2L_4_16375001 chr2L_16375001 RAL-336 79 chr2L 16872484 16872515 chr2L 16872564 16872594 4 80 6.0 4.0 5.0 0.7 110 chr2L 16872484 intron CR31781 + chr2L 16872539 intron CR31781 + chr2L 16872594 intron CR31781 + chr2L_4_16870001 chr2L_16870001 RAL-336 80 chr2L 17000118 17000136 chr2L 17000240 17000256 4 121 1.0 1.0 1.0 2.0 138 chr2L 17000118 intergenic not near genes chr2L 17000187 intergenic not near genes chr2L 17000256 intergenic not near genes chr2L_4_17000001 chr2L_17000001 RAL-336 81 chr2L 17005420 17005423 chr2L 17005517 17005520 4 97 10.0 10.5 10.2 0.4 100 chr2L 17005420 intergenic not near genes chr2L 17005470 intergenic not near genes chr2L 17005520 intergenic not near genes chr2L_4_17005001 chr2L_17005001 RAL-336 82 chr2L 17033923 17033948 chr2L 17034009 17034033 5 81 0.5 1.0 0.8 2.8 110 chr2L 17033923 intergenic not near genes chr2L 17033978 intergenic not near genes chr2L 17034033 intergenic not near genes chr2L_5_17030001 chr2L_17030001 RAL-336 83 chr2L 17432020 17432036 chr2L 17432127 17432143 1360 4 107 0.0 0.0 0.0 4.0 123 chr2L 17432020 intron Dif - chr2L 17432082 intron Dif - chr2L 17432143 intron Dif - chr2L_4_17430001 chr2L_17430001 RAL-336 84 chr2L 17879999 17880024 chr2L 17880086 17880111 4 87 1.0 0.5 0.8 2.2 112 chr2L 17879999 intergenic not near genes chr2L 17880055 intergenic not near genes chr2L 17880111 intergenic not near genes chr2L_4_17880001 chr2L_17880001 RAL-336 85 chr2L 18202447 18202464 chr2L 18202592 18202605 5 144 6.0 7.0 6.5 0.7 158 chr2L 18202447 intron CG42750 - chr2L 18202526 intron CG42750 - chr2L 18202605 intron CG42750 - chr2L_5_18200001 chr2L_18200001 RAL-336 86 chr2L 18898407 18898424 chr2L 18898489 18898505 7 81 3.0 1.0 2.0 2.3 98 chr2L 18898407 intergenic not near genes chr2L 18898456 intergenic not near genes chr2L 18898505 intergenic not near genes chr2L_7_18895001 chr2L_18895001 RAL-336 87 chr2L 19041398 19041404 chr2L 19041480 19041486 4 82 7.0 8.5 7.8 0.5 88 chr2L 19041398 3` UTR mib2 + chr2L 19041442 3` UTR mib2 + chr2L 19041486 3` UTR mib2 + chr2L_4_19040001 chr2L_19040001 RAL-336 88 chr2L 19070273 19070294 chr2L 19070359 19070387 7 89 3.0 3.0 3.0 1.8 114 chr2L 19070273 intergenic CG10702 - chr2L 19070330 intergenic CG10702 - chr2L 19070387 intergenic not near genes chr2L_7_19070001 chr2L_19070001 RAL-336 89 chr2L 19142443 19142466 chr2L 19142642 19142667 4 199 2.5 3.5 3.0 1.0 224 chr2L 19142443 intron brat + chr2L 19142555 intron brat + chr2L 19142667 intron brat + chr2L_4_19140001 chr2L_19140001 RAL-336 90 chr2L 19345013 19345047 chr2L 19357222 19357249 blood 5 12207 1.0 1.0 1.0 2.5 12236 chr2L 19345013 intron dnt - chr2L 19351131 intron dnt - chr2L 19357249 intron dnt - chr2L_5_19350001 chr2L_19350001 RAL-336 91 chr2L 19378356 19378367 chr2L 19378438 19378449 6 82 1.0 2.0 1.5 2.4 93 chr2L 19378356 intergenic not near genes chr2L 19378402 intergenic not near genes chr2L 19378449 intergenic not near genes chr2L_6_19375001 chr2L_19375001 RAL-336 92 chr2L 19384005 19384020 chr2L 19384089 19384089 4 84 6.5 6.5 6.5 0.5 84 chr2L 19384005 exon fon - chr2L 19384047 exon fon - chr2L 19384089 exon fon - chr2L_4_19380001 chr2L_19380001 RAL-336 93 chr2L 19620092 19620127 chr2L 19621081 19621102 jockey 4 984 0.5 0.0 0.2 3.3 1010 chr2L 19620092 intron Lar + chr2L 19620597 intron Lar + chr2L 19621102 intron Lar + chr2L_4_19620001 chr2L_19620001 RAL-336 94 chr2L 19754879 19754904 chr2L 19754963 19754986 6 79 6.5 9.0 7.8 0.7 107 chr2L 19754879 intron CG10631 - chr2L 19754932 intron CG10631 - chr2L 19754986 intron CG10631 - chr2L_6_19750001 chr2L_19750001 RAL-336 95 chr2L 19762816 19762836 chr2L 19763055 19763077 pogo 6 241 5.5 2.5 4.0 1.2 261 chr2L 19762816 intron fbp - chr2L 19762946 intron fbp - chr2L 19763077 intron fbp - chr2L_6_19760001 chr2L_19760001 RAL-336 96 chr2L 19888295 19888321 chr2L 19888375 19888397 4 79 1.5 5.5 3.5 0.9 102 chr2L 19888295 intron sick + chr2L 19888346 intron sick + chr2L 19888397 intron sick + chr2L_4_19885001 chr2L_19885001 RAL-336 97 chr2L 20041431 20041461 chr2L 20041516 20041546 6 80 1.0 3.0 2.0 2.0 115 chr2L 20041431 intron sNPF + chr2L 20041488 intron sNPF + chr2L 20041546 intron sNPF + chr2L_6_20040001 chr2L_20040001 RAL-336 98 chr2L 20272117 20272139 chr2L 20282828 20282850 copia 8 10711 3.0 4.0 3.5 1.8 10733 chr2L 20272117 intergenic not near genes chr2L 20277484 intergenic not near genes chr2L 20282850 intergenic not near genes chr2L_8_20275001 chr2L_20275001 RAL-336 99 chr2L 20303183 20303194 chr2L 20310650 20310661 blood 5 7467 1.5 1.5 1.5 2.0 7478 chr2L 20303183 intergenic not near genes chr2L 20306922 intergenic not near genes chr2L 20310661 intergenic not near genes chr2L_5_20305001 chr2L_20305001 RAL-336 100 chr2L 20429675 20429704 chr2L 20429789 20429796 4 108 4.0 4.0 4.0 0.8 121 chr2L 20429675 intron CG31688 + chr2L 20429736 intron CG31688 + chr2L 20429796 intron CG31688 + chr2L_4_20425001 chr2L_20425001 RAL-336 101 chr2L 20576221 20576250 chr2L 20583689 20583718 blood 4 7468 2.5 2.5 2.5 1.1 7497 chr2L 20576221 intergenic not near genes chr2L 20579970 intergenic not near genes chr2L 20583718 3` UTR CR44909 - chr2L_4_20575001 chr2L_20575001 RAL-336 102 chr2L 20793926 20793953 chr2L 20794019 20794047 6 91 6.0 7.0 6.5 0.8 121 chr2L 20793926 intron vari - chr2L 20793986 intron vari - chr2L 20794047 intron vari - chr2L_6_20790001 chr2L_20790001 RAL-336 103 chr2L 20967081 20967105 chr2L 20967167 20967189 7 83 2.0 2.5 2.2 2.2 108 chr2L 20967081 3` UTR CG42238 - chr2L 20967135 3` UTR CG42238 - chr2L 20967189 3` UTR CG42238 - chr2L_7_20965001 chr2L_20965001 RAL-336 104 chr2L 21020276 21020302 chr2L 21023953 21023975 NOF 6 3676 0.0 2.0 1.0 3.0 3699 chr2L 21020276 intron CG42238 - chr2L 21022126 intron CG42238 - chr2L 21023975 intron CG42238 - chr2L_6_21020001 chr2L_21020001 RAL-336 105 chr2L 21113684 21113717 chr2L 21113776 21113809 4 92 2.5 3.5 3.0 1.0 125 chr2L 21113684 intron Nhe2 + chr2L 21113746 intron Nhe2 + chr2L 21113809 intron Nhe2 + chr2L_4_21110001 chr2L_21110001 RAL-336 106 chr2L 21771227 21771259 chr2L 21771334 21771365 5 107 9.0 7.5 8.2 0.5 138 chr2L 21771227 intron CG31612 - chr2L 21771296 intron CG31612 - chr2L 21771365 intron CG31612 - chr2L_5_21770001 chr2L_21770001 RAL-336 107 chr2R 4838875 4838884 chr2R 4840398 4840407 transib2 5 1523 2.0 0.5 1.2 2.3 1532 chr2R 4838875 intergenic not near genes chr2R 4839641 intergenic not near genes chr2R 4840407 intergenic not near genes chr2R_5_4835001 chr2R_4835001 RAL-336 108 chr2R 5019285 5019300 chr2R 5019369 5019385 4 85 2.5 3.5 3.0 1.0 100 chr2R 5019285 intron Ir41a + chr2R 5019335 intron Ir41a + chr2R 5019385 intron Ir41a + chr2R_4_5015001 chr2R_5015001 RAL-336 109 chr2R 5075227 5075250 chr2R 5075354 5075373 4 126 1.0 0.0 0.5 2.7 146 chr2R 5075227 intergenic not near genes chr2R 5075300 intergenic not near genes chr2R 5075373 intergenic not near genes chr2R_4_5075001 chr2R_5075001 RAL-336 110 chr2R 5794239 5794263 chr2R 5794367 5794391 4 128 4.0 3.5 3.8 0.8 152 chr2R 5794239 intergenic not near genes chr2R 5794315 intergenic not near genes chr2R 5794391 intergenic not near genes chr2R_4_5790001 chr2R_5790001 RAL-336 111 chr2R 5869288 5869301 chr2R 5874364 5874377 flea 4 5076 0.0 2.5 1.2 1.8 5089 chr2R 5869288 intergenic not near genes chr2R 5871832 intergenic not near genes chr2R 5874377 intergenic not near genes chr2R_4_5870001 chr2R_5870001 RAL-336 112 chr2R 6168196 6168229 chr2R 6168278 6168311 5 81 2.5 2.0 2.2 1.6 115 chr2R 6168196 intron EcR - chr2R 6168254 intron EcR - chr2R 6168311 intron EcR - chr2R_5_6165001 chr2R_6165001 RAL-336 113 chr2R 6555608 6555628 chr2R 6555714 6555734 5 106 9.0 5.0 7.0 0.6 126 chr2R 6555608 intron jing + chr2R 6555671 intron jing + chr2R 6555734 intron jing + chr2R_5_6555001 chr2R_6555001 RAL-336 114 chr2R 6651382 6651391 chr2R 6651482 6651501 4 105 11.5 8.5 10.0 0.4 119 chr2R 6651382 intron debcl + chr2R 6651442 intron debcl + chr2R 6651501 intron debcl + chr2R_4_6650001 chr2R_6650001 RAL-336 115 chr2R 6685881 6685890 chr2R 6685952 6685971 7 79 10.0 7.5 8.8 0.7 90 chr2R 6685881 intron,intron CG9422 +,Tdc2 - chr2R 6685926 intron,intron CG9422 +,Tdc2 - chr2R 6685971 intron,intron CG9422 +,Tdc2 - chr2R_7_6685001 chr2R_6685001 RAL-336 116 chr2R 6699596 6699620 chr2R 6699680 6699705 5 85 1.5 1.5 1.5 2.0 109 chr2R 6699596 intergenic Rab2 + chr2R 6699650 intergenic Rab2 + chr2R 6699705 intergenic Rab2 + chr2R_5_6695001 chr2R_6695001 RAL-336 117 chr2R 6876224 6876250 chr2R 6876306 6876330 4 82 4.0 4.0 4.0 0.8 106 chr2R 6876224 intron,intron CR44169 +,Spn42Da - chr2R 6876277 5` UTR,intron CR44169 +,Spn42Da - chr2R 6876330 5` UTR,intron CR44169 +,Spn42Da - chr2R_4_6875001 chr2R_6875001 RAL-336 118 chr2R 6988272 6988285 chr2R 6988361 6988377 5 92 11.0 8.5 9.8 0.5 105 chr2R 6988272 intron CG17002 + chr2R 6988324 intron CG17002 + chr2R 6988377 intron CG17002 + chr2R_5_6985001 chr2R_6985001 RAL-336 119 chr2R 7196567 7196598 chr2R 7201342 7201373 F-element 6 4775 2.5 1.0 1.8 2.1 4806 chr2R 7196567 intron pk + chr2R 7198970 intron pk + chr2R 7201373 intron pk + chr2R_6_7195001 chr2R_7195001 RAL-336 120 chr2R 7209863 7209872 chr2R 7217611 7217633 roo 5 7753 0.5 1.0 0.8 2.8 7770 chr2R 7209863 intron pk + chr2R 7213748 intron pk + chr2R 7217633 intron pk + chr2R_5_7210001 chr2R_7210001 RAL-336 121 chr2R 7336105 7336134 chr2R 7336223 7336225 6 110 9.5 7.5 8.5 0.6 120 chr2R 7336105 intron Dscam1 - chr2R 7336165 intron Dscam1 - chr2R 7336225 intron Dscam1 - chr2R_6_7335001 chr2R_7335001 RAL-336 122 chr2R 7434892 7434902 chr2R 7439193 7439202 Juan 5 4301 1.0 4.5 2.8 1.3 4310 chr2R 7434892 intergenic so + chr2R 7437047 intergenic not near genes chr2R 7439202 intergenic not near genes chr2R_5_7435001 chr2R_7435001 RAL-336 123 chr2R 7815671 7815703 chr2R 7822140 7822171 Burdock 5 6469 1.5 1.5 1.5 2.0 6500 chr2R 7815671 intergenic CG1882 + chr2R 7818921 intergenic not near genes chr2R 7822171 3` UTR cathD - chr2R_5_7815001 chr2R_7815001 RAL-336 124 chr2R 7972009 7972031 chr2R 7979103 7979118 4 7089 17.5 20.0 18.8 0.2 7109 chr2R 7972009 intergenic CG8726 -,CSN4 + chr2R 7975564 exon ACC - chr2R 7979118 exon ACC - chr2R_4_7975001 chr2R_7975001 RAL-336 125 chr2R 8067076 8067096 chr2R 8067160 8067180 5 83 4.0 3.0 3.5 1.1 104 chr2R 8067076 intron CG17977 - chr2R 8067128 exon CG17977 - chr2R 8067180 exon CG17977 - chr2R_5_8065001 chr2R_8065001 RAL-336 126 chr2R 8089263 8089286 chr2R 8089349 8089372 6 86 1.5 2.5 2.0 2.0 109 chr2R 8089263 3` UTR sut2 + chr2R 8089318 intergenic sut2 +,sut3 + chr2R 8089372 intergenic sut2 +,sut3 + chr2R_6_8085001 chr2R_8085001 RAL-336 127 chr2R 8105933 8105967 chr2R 8106024 8106057 8 89 9.5 10.0 9.8 0.7 124 chr2R 8105933 5` UTR Cul4 - chr2R 8105995 intron Cul4 - chr2R 8106057 5` UTR Cul4 - chr2R_8_8105001 chr2R_8105001 RAL-336 128 chr2R 8249577 8249595 chr2R 8249659 8249677 4 79 3.0 1.5 2.2 1.2 100 chr2R 8249577 5` UTR CG44439 - chr2R 8249627 intergenic CG44439 - chr2R 8249677 intergenic CG44439 - chr2R_4_8245001 chr2R_8245001 RAL-336 129 chr2R 8368183 8368222 chr2R 8368263 8368302 8 75 1.0 4.0 2.5 2.3 119 chr2R 8368183 intron pdm3 + chr2R 8368242 intron pdm3 + chr2R 8368302 intron pdm3 + chr2R_8_8365001 chr2R_8365001 RAL-336 130 chr2R 8398219 8398239 chr2R 8402999 8403020 Doc 4 4781 5.0 2.5 3.8 0.8 4801 chr2R 8398219 intron CG2121 - chr2R 8400620 intron CG2121 - chr2R 8403020 intron CG2121 - chr2R_4_8400001 chr2R_8400001 RAL-336 131 chr2R 8627757 8627763 chr2R 8627836 8627842 4 79 3.0 0.5 1.8 1.4 85 chr2R 8627757 intergenic CG14749 +,beta3GalTII - chr2R 8627800 intergenic CG14749 +,beta3GalTII - chr2R 8627842 intergenic CG14749 +,beta3GalTII - chr2R_4_8625001 chr2R_8625001 RAL-336 132 chr2R 8648620 8648649 chr2R 8648708 8648717 5 83 14.5 16.5 15.5 0.3 97 chr2R 8648620 intergenic not near genes chr2R 8648668 intergenic not near genes chr2R 8648717 intergenic not near genes chr2R_5_8645001 chr2R_8645001 RAL-336 133 chr2R 8801323 8801351 chr2R 8801412 8801441 4 90 4.0 5.0 4.5 0.7 118 chr2R 8801323 intron sns + chr2R 8801382 intron sns + chr2R 8801441 intron sns + chr2R_4_8800001 chr2R_8800001 RAL-336 134 chr2R 9031987 9032001 chr2R 9032064 9032079 5 76 7.5 9.0 8.2 0.5 92 chr2R 9031987 intergenic not near genes chr2R 9032033 intergenic not near genes chr2R 9032079 intergenic not near genes chr2R_5_9030001 chr2R_9030001 RAL-336 135 chr2R 9138003 9138024 chr2R 9138178 9138197 4 174 5.5 7.0 6.2 0.6 194 chr2R 9138003 intergenic alc -,CG44286 +,CG8788 + chr2R 9138100 intergenic alc -,CG44286 +,CG8788 + chr2R 9138197 intergenic alc -,CG44286 +,CG8788 + chr2R_4_9135001 chr2R_9135001 RAL-336 136 chr2R 9210412 9210438 chr2R 9210533 9210540 6 118 10.0 12.0 11.0 0.5 128 chr2R 9210412 intergenic not near genes chr2R 9210476 intergenic not near genes chr2R 9210540 intergenic not near genes chr2R_6_9210001 chr2R_9210001 RAL-336 137 chr2R 9212127 9212144 chr2R 9212212 9212235 4 89 4.5 6.5 5.5 0.6 108 chr2R 9212127 intergenic not near genes chr2R 9212181 intergenic not near genes chr2R 9212235 intergenic not near genes chr2R_4_9210001 chr2R_9210001 RAL-336 138 chr2R 9230226 9230235 chr2R 9230305 9230315 4 79 12.5 12.0 12.2 0.3 89 chr2R 9230226 intron hig - chr2R 9230270 intron hig - chr2R 9230315 exon hig - chr2R_4_9230001 chr2R_9230001 RAL-336 139 chr2R 9323498 9323508 chr2R 9326095 9326128 4 2608 11.5 9.0 10.2 0.4 2630 chr2R 9323498 intron,intron CG13739 -,CG13954 - chr2R 9324813 intron,intron CG13739 -,CG13954 - chr2R 9326128 intron,intron CG13739 -,CG13954 - chr2R_4_9320001 chr2R_9320001 RAL-336 140 chr2R 9368129 9368154 chr2R 9368204 9368224 8 72 2.0 0.0 1.0 4.0 95 chr2R 9368129 intron CG13954 - chr2R 9368176 intron CG13954 - chr2R 9368224 intron CG13954 - chr2R_8_9365001 chr2R_9365001 RAL-336 141 chr2R 9415869 9415882 chr2R 9415955 9415968 4 86 5.5 2.5 4.0 0.8 99 chr2R 9415869 intron wun2 + chr2R 9415918 intron wun2 + chr2R 9415968 intron wun2 + chr2R_4_9415001 chr2R_9415001 RAL-336 142 chr2R 9510665 9510696 chr2R 9510781 9510811 9 116 0.0 2.0 1.0 4.5 146 chr2R 9510665 intron brp + chr2R 9510738 intron brp + chr2R 9510811 intron brp + chr2R_9_9510001 chr2R_9510001 RAL-336 143 chr2R 9746551 9746575 chr2R 9747884 9747908 5 1333 8.5 13.5 11.0 0.4 1357 chr2R 9746551 5` UTR sqa - chr2R 9747230 5` UTR sqa - chr2R 9747908 5` UTR sqa - chr2R_5_9745001 chr2R_9745001 RAL-336 144 chr2R 9935050 9935061 chr2R 9935132 9935143 4 82 6.5 10.0 8.2 0.4 93 chr2R 9935050 intron Mef2 - chr2R 9935096 intron Mef2 - chr2R 9935143 intron Mef2 - chr2R_4_9935001 chr2R_9935001 RAL-336 145 chr2R 10005848 10005877 chr2R 10007013 10007041 1360 4 1164 2.0 1.0 1.5 1.6 1193 chr2R 10005848 intron Pka-R2 - chr2R 10006444 intron Pka-R2 - chr2R 10007041 intron Pka-R2 - chr2R_4_10005001 chr2R_10005001 RAL-336 146 chr2R 10144265 10144271 chr2R 10147300 10147331 7 3040 7.0 20.0 13.5 0.5 3066 chr2R 10144265 exon CG18011 + chr2R 10145798 exon CG18011 + chr2R 10147331 exon KCNQ - chr2R_7_10145001 chr2R_10145001 RAL-336 147 chr2R 10201031 10201048 chr2R 10201107 10201124 5 75 7.0 6.5 6.8 0.6 93 chr2R 10201031 intergenic not near genes chr2R 10201078 intergenic not near genes chr2R 10201124 intergenic not near genes chr2R_5_10200001 chr2R_10200001 RAL-336 148 chr2R 10206336 10206352 chr2R 10206433 10206449 5 96 4.0 5.5 4.8 0.9 113 chr2R 10206336 3` UTR,3` UTR CG12912 -,Hr46 - chr2R 10206392 3` UTR,3` UTR CG12912 -,Hr46 - chr2R 10206449 3` UTR,3` UTR CG12912 -,Hr46 - chr2R_5_10205001 chr2R_10205001 RAL-336 149 chr2R 10216192 10216220 chr2R 10216270 10216298 9 77 1.0 3.0 2.0 3.0 106 chr2R 10216192 intron,intron CG12912 -,Hr46 - chr2R 10216245 intron,intron CG12912 -,Hr46 - chr2R 10216298 intron,intron CG12912 -,Hr46 - chr2R_9_10215001 chr2R_10215001 RAL-336 150 chr2R 10290123 10290135 chr2R 10290203 10290216 4 80 2.0 0.5 1.2 1.8 93 chr2R 10290123 intron CAP + chr2R 10290170 intron CAP + chr2R 10290216 intron CAP + chr2R_4_10290001 chr2R_10290001 RAL-336 151 chr2R 10352690 10352700 chr2R 10352758 10352777 5 70 2.0 6.5 4.2 1.0 87 chr2R 10352690 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352734 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352777 intron,exon,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R_5_10350001 chr2R_10350001 RAL-336 152 chr2R 10429022 10429048 chr2R 10429099 10429117 4 69 2.0 5.5 3.8 0.8 95 chr2R 10429022 intergenic not near genes chr2R 10429070 intergenic not near genes chr2R 10429117 intergenic not near genes chr2R_4_10425001 chr2R_10425001 RAL-336 153 chr2R 10469025 10469046 chr2R 10469151 10469172 6 126 3.5 2.0 2.8 1.6 147 chr2R 10469025 intron CG11777 + chr2R 10469098 intron CG11777 + chr2R 10469172 intron CG11777 + chr2R_6_10465001 chr2R_10465001 RAL-336 154 chr2R 10574625 10574627 chr2R 10574707 10574708 4 81 1.0 0.0 0.5 2.7 83 chr2R 10574625 intron psq + chr2R 10574666 intron psq + chr2R 10574708 intron psq + chr2R_4_10570001 chr2R_10570001 RAL-336 155 chr2R 10800115 10800145 chr2R 10800196 10800227 4 82 5.5 5.5 5.5 0.6 112 chr2R 10800115 intergenic wde - chr2R 10800171 intergenic wde - chr2R 10800227 intergenic wde - chr2R_4_10800001 chr2R_10800001 RAL-336 156 chr2R 11207827 11207848 chr2R 11208009 11208041 BS 6 187 3.0 2.0 2.5 1.7 214 chr2R 11207827 intron shn + chr2R 11207934 intron shn + chr2R 11208041 intron shn + chr2R_6_11205001 chr2R_11205001 RAL-336 157 chr2R 11292974 11292996 chr2R 11293053 11293075 10 76 5.0 6.0 5.5 1.5 101 chr2R 11292974 exon,3` UTR dare -,CG30033 + chr2R 11293024 5` UTR,3` UTR dare -,CG30033 + chr2R 11293075 5` UTR,3` UTR dare -,CG30033 + chr2R_10_11290001 chr2R_11290001 RAL-336 158 chr2R 11472648 11472680 chr2R 11473844 11473875 pogo 4 1194 0.0 2.0 1.0 2.0 1227 chr2R 11472648 intergenic not near genes chr2R 11473262 intergenic not near genes chr2R 11473875 intergenic not near genes chr2R_4_11470001 chr2R_11470001 RAL-336 159 chr2R 12186009 12186036 chr2R 12186104 12186131 6 94 2.5 1.5 2.0 2.0 122 chr2R 12186009 intron Cyp6g1 + chr2R 12186070 intron Cyp6g1 + chr2R 12186131 intron Cyp6g1 + chr2R_6_12185001 chr2R_12185001 RAL-336 160 chr2R 12187471 12187491 chr2R 12190092 12190123 17 2624 54.5 47.0 50.8 0.3 2652 chr2R 12187471 exon Cyp6g1 + chr2R 12188797 exon Cyp6g2 - chr2R 12190123 exon Cyp6g2 - chr2R_17_12185001 chr2R_12185001 RAL-336 161 chr2R 12481141 12481165 chr2R 12482945 12482966 roo 6 1801 5.0 4.5 4.8 1.0 1825 chr2R 12481141 exon Dh44-R2 + chr2R 12482054 intron Dh44-R2 + chr2R 12482966 intron Dh44-R2 + chr2R_6_12480001 chr2R_12480001 RAL-336 162 chr2R 13078754 13078774 chr2R 13078851 13078871 7 94 2.0 0.5 1.2 3.2 117 chr2R 13078754 intron Drl-2 - chr2R 13078812 intron Drl-2 - chr2R 13078871 intron Drl-2 - chr2R_7_13075001 chr2R_13075001 RAL-336 163 chr2R 13136842 13136870 chr2R 13141637 13141668 Doc 9 4797 2.0 5.5 3.8 1.9 4826 chr2R 13136842 exon Cap-G + chr2R 13139255 intron Cap-G + chr2R 13141668 intron Cap-G + chr2R_9_13135001 chr2R_13135001 RAL-336 164 chr2R 13580493 13580529 chr2R 13580843 13580867 jockey 13 345 2.0 5.0 3.5 2.9 374 chr2R 13580493 3` UTR CG6191 - chr2R 13580680 3` UTR,3` UTR CG6191 -,CG45088 - chr2R 13580867 3` UTR,3` UTR CG6191 -,CG45088 - chr2R_13_13580001 chr2R_13580001 RAL-336 165 chr2R 13905600 13905635 chr2R 13907582 13907599 Rt1a 5 1977 3.0 3.0 3.0 1.2 1999 chr2R 13905600 intron shot - chr2R 13906600 intron shot - chr2R 13907599 intron shot - chr2R_5_13905001 chr2R_13905001 RAL-336 166 chr2R 14018179 14018186 chr2R 14018263 14018270 4 84 1.0 3.5 2.2 1.2 91 chr2R 14018179 intron mam + chr2R 14018224 intron mam + chr2R 14018270 intron mam + chr2R_4_14015001 chr2R_14015001 RAL-336 167 chr2R 14393873 14393895 chr2R 14393956 14393980 4 84 1.5 1.5 1.5 1.6 107 chr2R 14393873 intergenic not near genes chr2R 14393926 intergenic not near genes chr2R 14393980 intergenic not near genes chr2R_4_14390001 chr2R_14390001 RAL-336 168 chr2R 14641419 14641435 chr2R 14641505 14641521 4 86 2.5 1.5 2.0 1.3 102 chr2R 14641419 intergenic not near genes chr2R 14641470 intergenic not near genes chr2R 14641521 intergenic not near genes chr2R_4_14640001 chr2R_14640001 RAL-336 169 chr2R 14820907 14820927 chr2R 14820994 14821005 5 85 5.5 4.5 5.0 0.8 98 chr2R 14820907 intergenic not near genes chr2R 14820956 intergenic not near genes chr2R 14821005 intergenic not near genes chr2R_5_14820001 chr2R_14820001 RAL-336 170 chr2R 14855029 14855065 chr2R 14855121 14855156 6 91 2.5 0.5 1.5 2.4 127 chr2R 14855029 5` UTR Ciao1 - chr2R 14855092 intergenic Ciao1 -,HPS1 + chr2R 14855156 intergenic Ciao1 -,HPS1 + chr2R_6_14855001 chr2R_14855001 RAL-336 171 chr2R 14873700 14873717 chr2R 14875217 14875235 4 1518 3.5 1.0 2.2 1.2 1535 chr2R 14873700 intergenic Cyp6a22 +,Cyp6a17 + chr2R 14874468 exon Cyp6a17 + chr2R 14875235 exon Cyp6a17 + chr2R_4_14870001 chr2R_14870001 RAL-336 172 chr2R 14911708 14911725 chr2R 14911831 14911845 6 121 2.0 1.5 1.8 2.1 137 chr2R 14911708 intron CG10249 - chr2R 14911776 intron CG10249 - chr2R 14911845 intron CG10249 - chr2R_6_14910001 chr2R_14910001 RAL-336 173 chr2R 15015461 15015485 chr2R 15022878 15022909 mdg1 4 7422 1.0 1.0 1.0 2.0 7448 chr2R 15015461 intron hbs + chr2R 15019185 intron hbs + chr2R 15022909 intron hbs + chr2R_4_15015001 chr2R_15015001 RAL-336 174 chr2R 15133484 15133512 chr2R 15133563 15133591 7 79 1.0 4.0 2.5 2.0 107 chr2R 15133484 intron chn + chr2R 15133538 intron chn + chr2R 15133591 intron chn + chr2R_7_15130001 chr2R_15130001 RAL-336 175 chr2R 15137971 15137982 chr2R 15138051 15138062 5 79 5.5 0.5 3.0 1.2 91 chr2R 15137971 intron chn + chr2R 15138016 intron chn + chr2R 15138062 intron chn + chr2R_5_15135001 chr2R_15135001 RAL-336 176 chr2R 15422534 15422564 chr2R 15422610 15422641 4 77 6.0 9.5 7.8 0.5 107 chr2R 15422534 intron CG43729 + chr2R 15422588 intron CG43729 + chr2R 15422641 intron CG43729 + chr2R_4_15420001 chr2R_15420001 RAL-336 177 chr2R 15558572 15558732 chr2R 15558631 15558844 4 100 1.5 4.5 3.0 1.0 272 chr2R 15558572 intron CG12963 + chr2R 15558708 intron CG12963 + chr2R 15558844 intron CG12963 + chr2R_4_15555001 chr2R_15555001 RAL-336 178 chr2R 15655988 15656007 chr2R 15656068 15656087 6 80 2.0 0.0 1.0 3.0 99 chr2R 15655988 intron CG42524 + chr2R 15656038 intron CG42524 + chr2R 15656087 intron CG42524 + chr2R_6_15655001 chr2R_15655001 RAL-336 179 chr2R 15750012 15750046 chr2R 15750102 15750130 5 88 4.0 3.0 3.5 1.1 118 chr2R 15750012 intron CG30089 + chr2R 15750071 intron CG30089 + chr2R 15750130 intron CG30089 + chr2R_5_15750001 chr2R_15750001 RAL-336 180 chr2R 15847615 15847632 chr2R 15847688 15847709 4 76 1.5 2.0 1.8 1.4 94 chr2R 15847615 intron tun + chr2R 15847662 intron tun + chr2R 15847709 intron tun + chr2R_4_15845001 chr2R_15845001 RAL-336 181 chr2R 16000656 16000670 chr2R 16000717 16000742 6 68 9.0 8.5 8.8 0.6 86 chr2R 16000656 intron ATPCL - chr2R 16000699 intron ATPCL - chr2R 16000742 intron ATPCL - chr2R_6_16000001 chr2R_16000001 RAL-336 182 chr2R 16226885 16226897 chr2R 16227071 16227083 4 186 3.0 4.0 3.5 0.9 198 chr2R 16226885 intron,intron CG15706 -,Tsf3 + chr2R 16226984 intron,intron CG15706 -,Tsf3 + chr2R 16227083 intron,intron CG15706 -,Tsf3 + chr2R_4_16225001 chr2R_16225001 RAL-336 183 chr2R 16387512 16387542 chr2R 16387993 16388001 5 476 2.5 2.0 2.2 1.6 489 chr2R 16387512 intron Sema-2b + chr2R 16387756 intron Sema-2b + chr2R 16388001 intron Sema-2b + chr2R_5_16385001 chr2R_16385001 RAL-336 184 chr2R 16596940 16596949 chr2R 16597022 16597031 4 82 5.5 5.0 5.2 0.6 91 chr2R 16596940 exon CG8303 - chr2R 16596986 intron CG8303 - chr2R 16597031 intron CG8303 - chr2R_4_16595001 chr2R_16595001 RAL-336 185 chr2R 16779523 16779535 chr2R 16779687 16779699 4 164 3.5 7.0 5.2 0.6 176 chr2R 16779523 intergenic resilin + chr2R 16779611 intergenic resilin + chr2R 16779699 intergenic resilin + chr2R_4_16775001 chr2R_16775001 RAL-336 186 chr2R 17048624 17048647 chr2R 17048703 17048710 5 75 5.5 4.0 4.8 0.9 86 chr2R 17048624 3` UTR CG9642 + chr2R 17048667 3` UTR CG9642 + chr2R 17048710 3` UTR CG9642 + chr2R_5_17045001 chr2R_17045001 RAL-336 187 chr2R 17465124 17465143 chr2R 17465205 17465224 4 80 5.0 4.5 4.8 0.7 100 chr2R 17465124 3` UTR CG14478 + chr2R 17465174 3` UTR CG14478 + chr2R 17465224 3` UTR CG14478 + chr2R_4_17465001 chr2R_17465001 RAL-336 188 chr2R 17782334 17782386 chr2R 17783582 17783589 pogo 4 1225 1.0 0.5 0.8 2.2 1255 chr2R 17782334 intergenic CG33981 -,fab1 - chr2R 17782962 intergenic not near genes chr2R 17783589 intergenic mir-31a - chr2R_4_17780001 chr2R_17780001 RAL-336 189 chr2R 18031692 18031703 chr2R 18031780 18031795 4 90 5.5 6.0 5.8 0.6 103 chr2R 18031692 intergenic not near genes chr2R 18031744 intergenic not near genes chr2R 18031795 intergenic not near genes chr2R_4_18030001 chr2R_18030001 RAL-336 190 chr2R 18045667 18045691 chr2R 18046019 18046043 jockey 5 352 2.0 0.5 1.2 2.3 376 chr2R 18045667 intergenic not near genes chr2R 18045855 intergenic not near genes chr2R 18046043 intergenic CG5767 - chr2R_5_18045001 chr2R_18045001 RAL-336 191 chr2R 18168405 18168419 chr2R 18168515 18168529 4 110 6.5 9.0 7.8 0.5 124 chr2R 18168405 intergenic CG42518 +,MED9 +,Dgp-1 - chr2R 18168467 intergenic CG42518 +,MED9 +,Dgp-1 - chr2R 18168529 intergenic CG42518 +,MED9 +,Dgp-1 - chr2R_4_18165001 chr2R_18165001 RAL-336 192 chr2R 18255695 18255723 chr2R 18255909 18255938 5 214 0.5 1.5 1.0 2.5 243 chr2R 18255695 intergenic not near genes chr2R 18255816 intergenic not near genes chr2R 18255938 intergenic not near genes chr2R_5_18255001 chr2R_18255001 RAL-336 193 chr2R 18541634 18541660 chr2R 18541816 18541842 6 182 2.0 4.0 3.0 1.5 208 chr2R 18541634 intron Rgk2 + chr2R 18541738 intron Rgk2 + chr2R 18541842 intron Rgk2 + chr2R_6_18540001 chr2R_18540001 RAL-336 194 chr2R 18575798 18575830 chr2R 18581985 18582018 3S18 5 6178 4.5 0.5 2.5 1.4 6220 chr2R 18575798 intron GEFmeso - chr2R 18578908 intron GEFmeso - chr2R 18582018 intron GEFmeso - chr2R_5_18575001 chr2R_18575001 RAL-336 195 chr2R 18590871 18590901 chr2R 18600019 18600053 roo 5 9151 3.5 2.5 3.0 1.2 9182 chr2R 18590871 intron GEFmeso - chr2R 18595462 intron GEFmeso - chr2R 18600053 intron GEFmeso - chr2R_5_18595001 chr2R_18595001 RAL-336 196 chr2R 18871654 18871671 chr2R 18871739 18871756 4 85 7.5 5.0 6.2 0.6 102 chr2R 18871654 intergenic not near genes chr2R 18871705 intergenic not near genes chr2R 18871756 intergenic not near genes chr2R_4_18870001 chr2R_18870001 RAL-336 197 chr2R 19010747 19010771 chr2R 19010862 19010862 4 105 1.0 2.5 1.8 1.4 115 chr2R 19010747 intergenic not near genes chr2R 19010804 intergenic not near genes chr2R 19010862 intergenic not near genes chr2R_4_19010001 chr2R_19010001 RAL-336 198 chr2R 19226576 19226598 chr2R 19226741 19226764 7 165 6.0 7.5 6.8 0.9 188 chr2R 19226576 3` UTR hppy + chr2R 19226670 3` UTR hppy + chr2R 19226764 3` UTR hppy + chr2R_7_19225001 chr2R_19225001 RAL-336 199 chr2R 19281471 19281494 chr2R 19281558 19281581 5 86 4.0 4.5 4.2 1.0 110 chr2R 19281471 3` UTR CG11906 - chr2R 19281526 3` UTR CG11906 - chr2R 19281581 3` UTR CG11906 - chr2R_5_19280001 chr2R_19280001 RAL-336 200 chr2R 19300964 19300995 chr2R 19301046 19301078 8 83 8.5 11.0 9.8 0.7 114 chr2R 19300964 intron Tab2 + chr2R 19301021 intron Tab2 + chr2R 19301078 intron Tab2 + chr2R_8_19300001 chr2R_19300001 RAL-336 201 chr2R 19535573 19535589 chr2R 19535657 19535673 4 80 6.0 6.0 6.0 0.6 100 chr2R 19535573 intron sm - chr2R 19535623 intron sm - chr2R 19535673 intron sm - chr2R_4_19535001 chr2R_19535001 RAL-336 202 chr2R 19546223 19546246 chr2R 19546300 19546323 5 75 5.0 6.0 5.5 0.8 100 chr2R 19546223 intron sm - chr2R 19546273 intron sm - chr2R 19546323 intron sm - chr2R_5_19545001 chr2R_19545001 RAL-336 203 chr2R 19914846 19914874 chr2R 19922258 19922265 mdg1 5 7408 1.0 0.5 0.8 2.8 7419 chr2R 19914846 intergenic not near genes chr2R 19918556 intergenic not near genes chr2R 19922265 intergenic not near genes chr2R_5_19915001 chr2R_19915001 RAL-336 204 chr2R 20162688 20162711 chr2R 20162805 20162828 8 116 12.5 9.5 11.0 0.7 140 chr2R 20162688 intergenic not near genes chr2R 20162758 intergenic not near genes chr2R 20162828 intergenic not near genes chr2R_8_20160001 chr2R_20160001 RAL-336 205 chr2R 20395032 20395194 chr2R 20395192 20395271 5 114 0.0 0.5 0.2 4.2 239 chr2R 20395032 intergenic not near genes chr2R 20395152 intergenic not near genes chr2R 20395271 intergenic not near genes chr2R_5_20395001 chr2R_20395001 RAL-336 206 chr2R 20541986 20542015 chr2R 20542064 20542092 5 77 0.5 0.5 0.5 3.3 106 chr2R 20541986 intergenic not near genes chr2R 20542039 intergenic not near genes chr2R 20542092 intergenic not near genes chr2R_5_20540001 chr2R_20540001 RAL-336 207 chr2R 20848933 20848960 chr2R 20849019 20849046 4 86 3.5 8.0 5.8 0.6 113 chr2R 20848933 exon CG17999 - chr2R 20848990 intron CG17999 - chr2R 20849046 intron CG17999 - chr2R_4_20845001 chr2R_20845001 RAL-336 208 chr2R 20970387 20970404 chr2R 20970502 20970505 4 111 7.0 4.0 5.5 0.6 118 chr2R 20970387 intergenic not near genes chr2R 20970446 intergenic not near genes chr2R 20970505 intergenic not near genes chr2R_4_20970001 chr2R_20970001 RAL-336 209 chr2R 21366526 21366539 chr2R 21366630 21366644 4 105 9.5 5.5 7.5 0.5 118 chr2R 21366526 intron cv-2 - chr2R 21366585 intron cv-2 - chr2R 21366644 intron cv-2 - chr2R_4_21365001 chr2R_21365001 RAL-336 210 chr2R 21380185 21380204 chr2R 21380344 21380363 5 159 4.0 7.5 5.8 0.7 178 chr2R 21380185 intergenic not near genes chr2R 21380274 intergenic not near genes chr2R 21380363 intergenic not near genes chr2R_5_21380001 chr2R_21380001 RAL-336 211 chr2R 21421341 21421353 chr2R 21421420 21421431 6 78 6.0 8.5 7.2 0.7 90 chr2R 21421341 intron Sdc - chr2R 21421386 intron Sdc - chr2R 21421431 intron Sdc - chr2R_6_21420001 chr2R_21420001 RAL-336 212 chr2R 21700164 21700186 chr2R 21700246 21700272 5 85 0.0 1.5 0.8 2.8 108 chr2R 21700164 intron HmgZ - chr2R 21700218 intron HmgZ - chr2R 21700272 intron HmgZ - chr2R_5_21700001 chr2R_21700001 RAL-336 213 chr2R 21963198 21963208 chr2R 21963282 21963293 4 84 3.0 1.0 2.0 1.3 95 chr2R 21963198 intergenic not near genes chr2R 21963246 intergenic not near genes chr2R 21963293 intergenic not near genes chr2R_4_21960001 chr2R_21960001 RAL-336 214 chr2R 22072690 22072713 chr2R 22072775 22072798 7 85 1.0 2.0 1.5 2.8 108 chr2R 22072690 intron CG11474 - chr2R 22072744 intron CG11474 - chr2R 22072798 exon CG11474 - chr2R_7_22070001 chr2R_22070001 RAL-336 215 chr2R 22095983 22095995 chr2R 22096066 22096076 4 82 2.5 4.5 3.5 0.9 93 chr2R 22095983 intron CG11073 - chr2R 22096030 intron CG11073 - chr2R 22096076 intron CG11073 - chr2R_4_22095001 chr2R_22095001 RAL-336 216 chr2R 22185673 22185703 chr2R 22185772 22185802 6 99 1.0 0.0 0.5 4.0 129 chr2R 22185673 3` UTR MED16 + chr2R 22185738 3` UTR MED16 + chr2R 22185802 3` UTR MED16 + chr2R_6_22185001 chr2R_22185001 RAL-336 217 chr2R 22292075 22292107 chr2R 22292161 22292194 11 85 4.5 7.0 5.8 1.6 119 chr2R 22292075 5` UTR CR43422 + chr2R 22292134 5` UTR CR43422 + chr2R 22292194 5` UTR CR43422 + chr2R_11_22290001 chr2R_22290001 RAL-336 218 chr2R 22774978 22775002 chr2R 22775396 22775420 jockey 4 418 1.0 2.5 1.8 1.4 442 chr2R 22774978 intron CG42260 - chr2R 22775199 intron CG42260 - chr2R 22775420 intron CG42260 - chr2R_4_22775001 chr2R_22775001 RAL-336 219 chr2R 22868255 22868275 chr2R 22868368 22868388 4 113 4.5 13.0 8.8 0.4 133 chr2R 22868255 5` UTR fd59A + chr2R 22868322 5` UTR fd59A + chr2R 22868388 5` UTR fd59A + chr2R_4_22865001 chr2R_22865001 RAL-336 220 chr2R 22945057 22945077 chr2R 22945171 22945189 6 114 7.5 8.5 8.0 0.7 132 chr2R 22945057 exon CG42694 + chr2R 22945123 3` UTR CG42694 + chr2R 22945189 intergenic CG42694 + chr2R_6_22945001 chr2R_22945001 RAL-336 221 chr2R 22991629 22991659 chr2R 22991721 22991750 5 89 11.5 7.5 9.5 0.5 121 chr2R 22991629 intron twi + chr2R 22991690 intron twi + chr2R 22991750 intron twi + chr2R_5_22990001 chr2R_22990001 RAL-336 222 chr2R 23045338 23045346 chr2R 23045552 23045558 5 213 4.5 5.5 5.0 0.8 220 chr2R 23045338 intron twi + chr2R 23045448 intron twi + chr2R 23045558 intron twi + chr2R_5_23045001 chr2R_23045001 RAL-336 223 chr2R 23052651 23052683 chr2R 23052727 23052759 5 75 2.5 3.0 2.8 1.3 108 chr2R 23052651 intergenic not near genes chr2R 23052705 intergenic not near genes chr2R 23052759 intergenic not near genes chr2R_5_23050001 chr2R_23050001 RAL-336 224 chr2R 23061755 23061785 chr2R 23061829 23061879 5 79 6.5 3.0 4.8 0.9 124 chr2R 23061755 3` UTR l(2)06496 - chr2R 23061817 3` UTR l(2)06496 - chr2R 23061879 3` UTR l(2)06496 - chr2R_5_23060001 chr2R_23060001 RAL-336 225 chr2R 23070409 23070429 chr2R 23070504 23070525 5 96 17.5 16.0 16.8 0.3 116 chr2R 23070409 intron l(2)k09913 + chr2R 23070467 intron l(2)k09913 + chr2R 23070525 intron l(2)k09913 + chr2R_5_23070001 chr2R_23070001 RAL-336 226 chr2R 23186580 23186598 chr2R 23186656 23186676 5 77 0.5 1.5 1.0 2.5 96 chr2R 23186580 intron CG34371 - chr2R 23186628 intron CG34371 - chr2R 23186676 intron CG34371 - chr2R_5_23185001 chr2R_23185001 RAL-336 227 chr2R 23356278 23356302 chr2R 23356367 23356375 5 86 13.0 14.0 13.5 0.3 97 chr2R 23356278 3` UTR Rpi + chr2R 23356326 3` UTR Rpi + chr2R 23356375 3` UTR,3` UTR Rpi +,CG3500 - chr2R_5_23355001 chr2R_23355001 RAL-336 228 chr2R 23394346 23394360 chr2R 23394426 23394442 4 81 7.5 11.5 9.5 0.4 96 chr2R 23394346 intron CG3530 - chr2R 23394394 intron CG3530 - chr2R 23394442 intron CG3530 - chr2R_4_23390001 chr2R_23390001 RAL-336 229 chr2R 23422651 23422678 chr2R 23422731 23422757 8 79 16.0 13.0 14.5 0.5 106 chr2R 23422651 intron CG9815 - chr2R 23422704 intron CG9815 - chr2R 23422757 intron CG9815 - chr2R_8_23420001 chr2R_23420001 RAL-336 230 chr2R 23487451 23487466 chr2R 23487532 23487548 4 80 4.5 5.0 4.8 0.7 97 chr2R 23487451 intron CG43795 + chr2R 23487500 intron CG43795 + chr2R 23487548 intron CG43795 + chr2R_4_23485001 chr2R_23485001 RAL-336 231 chr2R 23607048 23607192 chr2R 23607126 23607285 13 83 2.0 5.0 3.5 2.9 237 chr2R 23607048 intron CG17664 - chr2R 23607166 intron CG17664 - chr2R 23607285 intron CG17664 - chr2R_13_23605001 chr2R_23605001 RAL-336 232 chr2R 23986513 23986549 chr2R 23986592 23986628 8 79 3.0 3.0 3.0 2.0 115 chr2R 23986513 intron Phm - chr2R 23986570 intron Phm - chr2R 23986628 intron,5` UTR Phm -,CG30178 + chr2R_8_23985001 chr2R_23985001 RAL-336 233 chr2R 24031383 24031410 chr2R 24031463 24031493 16 82 3.5 1.5 2.5 4.6 110 chr2R 24031383 5` UTR CG30172 - chr2R 24031438 intergenic CG30172 -,Chi - chr2R 24031493 intergenic Chi -,CG30172 - chr2R_16_24030001 chr2R_24030001 RAL-336 234 chr2R 24045237 24045257 chr2R 24045319 24045341 5 83 8.0 8.0 8.0 0.6 104 chr2R 24045237 intron tsr - chr2R 24045289 intron tsr - chr2R 24045341 intron tsr - chr2R_5_24045001 chr2R_24045001 RAL-336 235 chr2R 24177234 24177259 chr2R 24184719 24184744 412 5 7485 1.0 0.5 0.8 2.8 7510 chr2R 24177234 3` UTR Nop60B + chr2R 24180989 intron Nop60B + chr2R 24184744 3` UTR Nop60B + chr2R_5_24180001 chr2R_24180001 RAL-336 236 chr2R 24212333 24212356 chr2R 24212431 24212454 5 97 5.0 2.5 3.8 1.0 121 chr2R 24212333 intergenic CG30419 - chr2R 24212394 intergenic CG30419 - chr2R 24212454 intergenic CG30419 - chr2R_5_24210001 chr2R_24210001 RAL-336 237 chr2R 24292507 24292542 chr2R 24292591 24292627 6 83 13.0 9.0 11.0 0.5 120 chr2R 24292507 intergenic not near genes chr2R 24292567 intergenic not near genes chr2R 24292627 intergenic not near genes chr2R_6_24290001 chr2R_24290001 RAL-336 238 chr2R 24353426 24353458 chr2R 24361788 24361812 roo 12 8361 2.0 2.0 2.0 4.0 8386 chr2R 24353426 intron,intron bs +,CR44811 - chr2R 24357619 intron,intron bs +,CR44811 - chr2R 24361812 intron,intron bs +,CR44811 - chr2R_12_24355001 chr2R_24355001 RAL-336 239 chr2R 24430722 24430931 chr2R 24430856 24431019 4 100 0.0 3.5 1.8 1.4 297 chr2R 24430722 intergenic CG15873 - chr2R 24430870 intergenic CG15873 -,Pgam5-2 - chr2R 24431019 intergenic CG15873 -,Pgam5-2 - chr2R_4_24430001 chr2R_24430001 RAL-336 240 chr2R 24548924 24548935 chr2R 24549008 24549008 5 82 9.0 6.5 7.8 0.6 84 chr2R 24548924 intron,intron CG4622 -,ITP + chr2R 24548966 intron,intron CG4622 -,ITP + chr2R 24549008 intron,intron CG4622 -,ITP + chr2R_5_24545001 chr2R_24545001 RAL-336 241 chr2R 24647591 24647618 chr2R 24655146 24655175 412 10 7555 1.5 3.0 2.2 3.1 7584 chr2R 24647591 intergenic not near genes chr2R 24651383 intergenic not near genes chr2R 24655175 intergenic not near genes chr2R_10_24650001 chr2R_24650001 RAL-336 242 chr2R 24727888 24727915 chr2R 24735396 24735423 mdg1 13 7506 1.0 7.0 4.0 2.6 7535 chr2R 24727888 intron Mid1 - chr2R 24731656 intron Mid1 - chr2R 24735423 intron Mid1 - chr2R_13_24730001 chr2R_24730001 RAL-336 243 chr2R 24763608 24763644 chr2R 24765584 24765597 G2 17 1971 5.5 6.0 5.8 2.5 1989 chr2R 24763608 exon CG3894 + chr2R 24764602 intron CG3894 + chr2R 24765597 exon CG3894 + chr2R_17_24760001 chr2R_24760001 RAL-336 244 chr2R 24884053 24884076 chr2R 24884134 24884158 7 82 3.5 2.5 3.0 1.8 105 chr2R 24884053 intron NKAIN + chr2R 24884106 intron NKAIN + chr2R 24884158 intron NKAIN + chr2R_7_24880001 chr2R_24880001 RAL-336 245 chr2R 24911473 24911494 chr2R 24911550 24911556 4 76 14.0 11.5 12.8 0.3 83 chr2R 24911473 intron NaCP60E + chr2R 24911514 intron NaCP60E + chr2R 24911556 intron NaCP60E + chr2R_4_24910001 chr2R_24910001 RAL-336 246 chr2R 24919084 24919117 chr2R 24919337 24919371 6 254 5.0 5.0 5.0 1.0 287 chr2R 24919084 3` UTR NaCP60E + chr2R 24919228 3` UTR NaCP60E + chr2R 24919371 3` UTR NaCP60E + chr2R_6_24915001 chr2R_24915001 RAL-336 247 chr2R 25004892 25004909 chr2R 25004970 25004985 4 78 2.5 0.5 1.5 1.6 93 chr2R 25004892 intron zip - chr2R 25004938 intron zip - chr2R 25004985 intron zip - chr2R_4_25000001 chr2R_25000001 RAL-336 248 chr2R 25014544 25014575 chr2R 25014620 25014651 5 68 3.5 3.5 3.5 1.1 107 chr2R 25014544 intron uzip + chr2R 25014598 intron uzip + chr2R 25014651 intron uzip + chr2R_5_25010001 chr2R_25010001 RAL-336 249 chr2R 25018343 25018375 chr2R 25018439 25018476 8 96 2.0 1.0 1.5 3.2 133 chr2R 25018343 intron uzip + chr2R 25018410 intron uzip + chr2R 25018476 intron uzip + chr2R_8_25015001 chr2R_25015001 RAL-336 250 chr2R 25022642 25022668 chr2R 25022726 25022752 5 82 3.0 1.5 2.2 1.6 110 chr2R 25022642 intron uzip + chr2R 25022697 intron uzip + chr2R 25022752 intron uzip + chr2R_5_25020001 chr2R_25020001 RAL-336 251 chr2R 25101280 25101297 chr2R 25101382 25101399 6 101 5.5 1.0 3.2 1.4 119 chr2R 25101280 intron lov - chr2R 25101340 intron lov - chr2R 25101399 intron lov - chr2R_6_25100001 chr2R_25100001 RAL-336 252 chr3L 390972 390978 chr3L 391078 391078 5 105 3.5 5.0 4.2 1.0 106 chr3L 390972 intron trh - chr3L 391025 intron trh - chr3L 391078 intron trh - chr3L_5_390001 chr3L_390001 RAL-336 253 chr3L 464037 464056 chr3L 464211 464230 4 174 6.5 6.0 6.2 0.6 193 chr3L 464037 intron klar - chr3L 464134 intron klar - chr3L 464230 intron klar - chr3L_4_460001 chr3L_460001 RAL-336 254 chr3L 642470 642502 chr3L 642560 642593 5 90 1.0 1.0 1.0 2.5 123 chr3L 642470 5` UTR CR43334 + chr3L 642532 5` UTR CR43334 + chr3L 642593 5` UTR CR43334 + chr3L_5_640001 chr3L_640001 RAL-336 255 chr3L 939773 939801 chr3L 940893 940904 jockey 9 1119 3.5 4.0 3.8 1.9 1131 chr3L 939773 intron Glut1 + chr3L 940338 intron Glut1 + chr3L 940904 intron Glut1 + chr3L_9_940001 chr3L_940001 RAL-336 256 chr3L 1021379 1021406 chr3L 1021458 1021470 5 72 1.5 2.0 1.8 1.8 91 chr3L 1021379 intron trio - chr3L 1021424 intron trio - chr3L 1021470 intron trio - chr3L_5_1020001 chr3L_1020001 RAL-336 257 chr3L 1039307 1039333 chr3L 1039764 1039766 8 455 4.0 1.5 2.8 2.1 459 chr3L 1039307 intron bab1 - chr3L 1039536 intron bab1 - chr3L 1039766 intron bab1 - chr3L_8_1035001 chr3L_1035001 RAL-336 258 chr3L 1040550 1040570 chr3L 1040634 1040654 9 84 3.0 1.5 2.2 2.8 104 chr3L 1040550 intron bab1 - chr3L 1040602 intron bab1 - chr3L 1040654 intron bab1 - chr3L_9_1040001 chr3L_1040001 RAL-336 259 chr3L 1154131 1154156 chr3L 1163281 1163289 roo 4 9142 0.0 1.0 0.5 2.7 9158 chr3L 1154131 intron bab2 - chr3L 1158710 intron bab2 - chr3L 1163289 intron bab2 - chr3L_4_1155001 chr3L_1155001 RAL-336 260 chr3L 1219607 1219622 chr3L 1227338 1227354 412 8 7732 4.5 4.5 4.5 1.5 7747 chr3L 1219607 intron mwh + chr3L 1223480 intron mwh + chr3L 1227354 intron mwh + chr3L_8_1220001 chr3L_1220001 RAL-336 261 chr3L 1270996 1271010 chr3L 1271070 1271088 4 77 2.0 1.5 1.8 1.4 92 chr3L 1270996 intron CG9134 + chr3L 1271042 intron CG9134 + chr3L 1271088 intron CG9134 + chr3L_4_1270001 chr3L_1270001 RAL-336 262 chr3L 1310982 1311013 chr3L 1315844 1315873 8 4861 33.5 37.5 35.5 0.2 4891 chr3L 1310982 exon CG2469 + chr3L 1313428 intergenic CG9186 -,CG9153 + chr3L 1315873 exon CG9153 + chr3L_8_1310001 chr3L_1310001 RAL-336 263 chr3L 1346902 1346926 chr3L 1347151 1347175 6 249 3.5 3.0 3.2 1.4 273 chr3L 1346902 intron Ptp61F - chr3L 1347038 intron Ptp61F - chr3L 1347175 intron Ptp61F - chr3L_6_1345001 chr3L_1345001 RAL-336 264 chr3L 1356897 1357008 chr3L 1356979 1357094 10 81 1.5 1.0 1.2 4.5 197 chr3L 1356897 intron Ptp61F - chr3L 1356996 intron Ptp61F - chr3L 1357094 intron Ptp61F - chr3L_10_1355001 chr3L_1355001 RAL-336 265 chr3L 1463437 1463450 chr3L 1463498 1463508 6 70 1.0 2.5 1.8 2.1 71 chr3L 1463437 intron Ptp61F - chr3L 1463472 intron Ptp61F - chr3L 1463508 intron Ptp61F - chr3L_6_1460001 chr3L_1460001 RAL-336 266 chr3L 1506000 1506032 chr3L 1513592 1513628 17.6 8 7591 3.5 4.5 4.0 1.6 7628 chr3L 1506000 intron,intron Psa +,cue - chr3L 1509814 intron,intron Psa +,cue - chr3L 1513628 intron,intron Psa +,cue - chr3L_8_1505001 chr3L_1505001 RAL-336 267 chr3L 1754694 1754722 chr3L 1754812 1754841 8 118 4.5 3.0 3.8 1.7 147 chr3L 1754694 intron Cht2 - chr3L 1754768 intron Cht2 - chr3L 1754841 intron Cht2 - chr3L_8_1750001 chr3L_1750001 RAL-336 268 chr3L 1922455 1922459 chr3L 1922531 1922536 6 76 3.5 4.5 4.0 1.2 81 chr3L 1922455 intron Dbx + chr3L 1922496 intron Dbx + chr3L 1922536 intron Dbx + chr3L_6_1920001 chr3L_1920001 RAL-336 269 chr3L 2139210 2139216 chr3L 2139291 2139292 4 79 2.5 2.5 2.5 1.1 82 chr3L 2139210 intron zormin - chr3L 2139251 intron zormin - chr3L 2139292 intron zormin - chr3L_4_2135001 chr3L_2135001 RAL-336 270 chr3L 2139219 2139233 chr3L 2139288 2139292 5 73 1.5 1.5 1.5 2.0 73 chr3L 2139219 intron zormin - chr3L 2139256 intron zormin - chr3L 2139292 intron zormin - chr3L_5_2135001 chr3L_2135001 RAL-336 271 chr3L 2187605 2187638 chr3L 2187687 2187721 9 80 1.0 4.0 2.5 2.6 116 chr3L 2187605 exon CG13810 + chr3L 2187663 3` UTR CG13810 + chr3L 2187721 intergenic CG13810 + chr3L_9_2185001 chr3L_2185001 RAL-336 272 chr3L 2447504 2447535 chr3L 2456660 2456674 roo 7 9153 3.0 3.0 3.0 1.8 9170 chr3L 2447504 intron CG45186 + chr3L 2452089 intron CG45186 + chr3L 2456674 intron CG45186 + chr3L_7_2450001 chr3L_2450001 RAL-336 273 chr3L 2478885 2479028 chr3L 2478965 2479118 6 92 1.5 1.5 1.5 2.4 233 chr3L 2478885 intron CG45186 + chr3L 2479002 intron CG45186 + chr3L 2479118 intron CG45186 + chr3L_6_2475001 chr3L_2475001 RAL-336 274 chr3L 2533657 2533663 chr3L 2533735 2533745 6 79 7.0 3.5 5.2 1.0 88 chr3L 2533657 intron Spn - chr3L 2533701 intron Spn - chr3L 2533745 intron Spn - chr3L_6_2530001 chr3L_2530001 RAL-336 275 chr3L 2561526 2561561 chr3L 2561603 2561634 7 76 1.5 0.5 1.0 3.5 108 chr3L 2561526 intron msn - chr3L 2561580 intron msn - chr3L 2561634 intron msn - chr3L_7_2560001 chr3L_2560001 RAL-336 276 chr3L 2683966 2683977 chr3L 2684042 2684053 4 76 4.0 2.5 3.2 1.0 87 chr3L 2683966 intron Fife - chr3L 2684010 intron Fife - chr3L 2684053 intron Fife - chr3L_4_2680001 chr3L_2680001 RAL-336 277 chr3L 2738306 2738321 chr3L 2738533 2738545 4 226 1.5 1.5 1.5 1.6 239 chr3L 2738306 intron Mrtf - chr3L 2738426 intron Mrtf - chr3L 2738545 intron Mrtf - chr3L_4_2735001 chr3L_2735001 RAL-336 278 chr3L 2766750 2766766 chr3L 2766847 2766863 4 97 0.5 2.5 1.5 1.6 113 chr3L 2766750 intergenic Non2 +,Mrtf - chr3L 2766806 intergenic Non2 +,Mrtf - chr3L 2766863 intergenic Non2 +,Mrtf - chr3L_4_2765001 chr3L_2765001 RAL-336 279 chr3L 2795723 2795749 chr3L 2795846 2795870 6 118 2.0 0.5 1.2 2.7 147 chr3L 2795723 intron CG43444 - chr3L 2795796 intron CG43444 - chr3L 2795870 intron CG43444 - chr3L_6_2795001 chr3L_2795001 RAL-336 280 chr3L 2882112 2882138 chr3L 2882188 2882214 4 76 0.0 2.0 1.0 2.0 102 chr3L 2882112 intergenic not near genes chr3L 2882163 intergenic not near genes chr3L 2882214 intergenic not near genes chr3L_4_2880001 chr3L_2880001 RAL-336 281 chr3L 3013453 3013476 chr3L 3013567 3013580 4 107 2.0 0.0 1.0 2.0 127 chr3L 3013453 intergenic not near genes chr3L 3013516 intergenic not near genes chr3L 3013580 intergenic not near genes chr3L_4_3010001 chr3L_3010001 RAL-336 282 chr3L 3125779 3125792 chr3L 3125860 3125873 4 81 2.0 0.0 1.0 2.0 94 chr3L 3125779 intron prominin-like - chr3L 3125826 intron prominin-like - chr3L 3125873 intron prominin-like - chr3L_4_3125001 chr3L_3125001 RAL-336 283 chr3L 3314171 3314200 chr3L 3314280 3314308 6 108 2.0 3.0 2.5 1.7 137 chr3L 3314171 intergenic ZnT63C +,Drsl2 + chr3L 3314240 intergenic Drsl2 +,ZnT63C + chr3L 3314308 intergenic Drsl2 +,ZnT63C + chr3L_6_3310001 chr3L_3310001 RAL-336 284 chr3L 3484372 3484405 chr3L 3484548 3484581 6 171 0.0 1.0 0.5 4.0 209 chr3L 3484372 intron,exon CG42324 +,CG43074 - chr3L 3484476 intron,exon CG42324 +,CG43074 - chr3L 3484581 intron,exon CG42324 +,CG43074 - chr3L_6_3480001 chr3L_3480001 RAL-336 285 chr3L 3619399 3619429 chr3L 3619493 3619522 4 93 1.0 0.5 0.8 2.2 123 chr3L 3619399 intergenic not near genes chr3L 3619460 intergenic not near genes chr3L 3619522 intergenic not near genes chr3L_4_3615001 chr3L_3615001 RAL-336 286 chr3L 3815059 3815083 chr3L 3815140 3815164 8 81 1.5 2.5 2.0 2.7 105 chr3L 3815059 intron,3` UTR Scsalpha +,CR43932 - chr3L 3815112 intron,3` UTR Scsalpha +,CR43932 - chr3L 3815164 intron,intron Scsalpha +,CR43932 - chr3L_8_3815001 chr3L_3815001 RAL-336 287 chr3L 3833737 3833760 chr3L 3833978 3834001 pogo 5 241 4.0 1.5 2.8 1.3 264 chr3L 3833737 intron enc + chr3L 3833869 intron enc + chr3L 3834001 intron enc + chr3L_5_3830001 chr3L_3830001 RAL-336 288 chr3L 3960213 3960230 chr3L 3960463 3960482 7 251 1.0 2.0 1.5 2.8 269 chr3L 3960213 intron CG12605 - chr3L 3960348 intron CG12605 - chr3L 3960482 intron CG12605 - chr3L_7_3960001 chr3L_3960001 RAL-336 289 chr3L 4038056 4038066 chr3L 4038121 4038146 4 74 1.5 2.0 1.8 1.4 90 chr3L 4038056 3` UTR CG11593 - chr3L 4038101 3` UTR CG11593 - chr3L 4038146 3` UTR CG11593 - chr3L_4_4035001 chr3L_4035001 RAL-336 290 chr3L 4195141 4195173 chr3L 4195242 4195273 6 101 2.5 1.0 1.8 2.1 132 chr3L 4195141 exon CG43367 + chr3L 4195207 intron CG43367 + chr3L 4195273 intron CG43367 + chr3L_6_4195001 chr3L_4195001 RAL-336 291 chr3L 4908908 4908932 chr3L 4909016 4909040 7 107 1.5 3.5 2.5 2.0 132 chr3L 4908908 intergenic not near genes chr3L 4908974 intergenic not near genes chr3L 4909040 intergenic not near genes chr3L_7_4905001 chr3L_4905001 RAL-336 292 chr3L 4942722 4942751 chr3L 4942802 4942831 7 78 2.5 1.0 1.8 2.5 109 chr3L 4942722 intron Con - chr3L 4942776 intron Con - chr3L 4942831 intron Con - chr3L_7_4940001 chr3L_4940001 RAL-336 293 chr3L 4958417 4958448 chr3L 4958505 4958536 6 82 0.5 1.5 1.0 3.0 119 chr3L 4958417 intron Con - chr3L 4958476 intron Con - chr3L 4958536 intron Con - chr3L_6_4955001 chr3L_4955001 RAL-336 294 chr3L 5104482 5104510 chr3L 5124616 5124630 8 20132 1.0 2.5 1.8 2.9 20148 chr3L 5104482 intergenic not near genes chr3L 5114556 intergenic not near genes chr3L 5124630 intergenic not near genes chr3L_8_5110001 chr3L_5110001 RAL-336 295 chr3L 5327377 5327396 chr3L 5327469 5327475 4 89 1.0 0.0 0.5 2.7 98 chr3L 5327377 intergenic not near genes chr3L 5327426 intergenic not near genes chr3L 5327475 intergenic not near genes chr3L_4_5325001 chr3L_5325001 RAL-336 296 chr3L 5388204 5388219 chr3L 5388525 5388542 5 323 4.0 1.0 2.5 1.4 338 chr3L 5388204 intergenic not near genes chr3L 5388373 intergenic not near genes chr3L 5388542 intergenic not near genes chr3L_5_5385001 chr3L_5385001 RAL-336 297 chr3L 5537726 5537757 chr3L 5538064 5538083 jockey 4 333 2.0 1.5 1.8 1.4 357 chr3L 5537726 intergenic not near genes chr3L 5537904 intergenic not near genes chr3L 5538083 intergenic CG10625 - chr3L_4_5535001 chr3L_5535001 RAL-336 298 chr3L 5926334 5926343 chr3L 5926507 5926530 BS 4 181 2.5 2.5 2.5 1.1 196 chr3L 5926334 intron Vap-33B + chr3L 5926432 intron Vap-33B + chr3L 5926530 intron Vap-33B + chr3L_4_5925001 chr3L_5925001 RAL-336 299 chr3L 6040366 6040393 chr3L 6042722 6042748 Doc 5 2353 1.0 1.0 1.0 2.5 2382 chr3L 6040366 intergenic Jon65Aiv + chr3L 6041557 intergenic not near genes chr3L 6042748 intergenic not near genes chr3L_5_6040001 chr3L_6040001 RAL-336 300 chr3L 6190871 6190883 chr3L 6191305 6191317 4 434 1.0 1.5 1.2 1.8 446 chr3L 6190871 exon CG7386 + chr3L 6191094 exon CG7386 + chr3L 6191317 exon CG7386 + chr3L_4_6190001 chr3L_6190001 RAL-336 301 chr3L 6632415 6632449 chr3L 6632502 6632535 11 87 3.5 2.0 2.8 2.9 120 chr3L 6632415 intron GluRIA + chr3L 6632475 intron GluRIA + chr3L 6632535 intron GluRIA + chr3L_11_6630001 chr3L_6630001 RAL-336 302 chr3L 7090023 7090050 chr3L 7090104 7090131 6 79 2.0 1.5 1.8 2.1 108 chr3L 7090023 intergenic not near genes chr3L 7090077 intergenic not near genes chr3L 7090131 intergenic not near genes chr3L_6_7090001 chr3L_7090001 RAL-336 303 chr3L 7285466 7285478 chr3L 7285544 7285552 4 76 1.5 1.0 1.2 1.8 86 chr3L 7285466 intron unc-13-4A - chr3L 7285509 intron unc-13-4A - chr3L 7285552 intron unc-13-4A - chr3L_4_7285001 chr3L_7285001 RAL-336 304 chr3L 7337129 7337142 chr3L 7337196 7337207 5 72 2.0 3.5 2.8 1.3 78 chr3L 7337129 exon eco - chr3L 7337168 exon eco - chr3L 7337207 exon eco - chr3L_5_7335001 chr3L_7335001 RAL-336 305 chr3L 7377336 7377349 chr3L 7380422 7380454 297 4 3100 1.5 2.5 2.0 1.3 3118 chr3L 7377336 intron SMSr - chr3L 7378895 intron SMSr - chr3L 7380454 intron SMSr - chr3L_4_7375001 chr3L_7375001 RAL-336 306 chr3L 7691841 7691859 chr3L 7691933 7691951 4 90 1.0 0.5 0.8 2.2 110 chr3L 7691841 intron,intron,intron CG32373 +,Ank2 -,CG44195 - chr3L 7691896 intron,intron,intron CG32373 +,Ank2 -,CG44195 - chr3L 7691951 intron,intron,intron CG32373 +,Ank2 -,CG44195 - chr3L_4_7690001 chr3L_7690001 RAL-336 307 chr3L 7869664 7869667 chr3L 7869744 7869747 4 80 8.5 2.5 5.5 0.6 83 chr3L 7869664 exon CG32365 + chr3L 7869706 exon CG32365 + chr3L 7869747 exon CG32365 + chr3L_4_7865001 chr3L_7865001 RAL-336 308 chr3L 7886528 7886547 chr3L 7889046 7889065 Stalker4 4 2518 0.5 1.5 1.0 2.0 2537 chr3L 7886528 intron CG32365 + chr3L 7887796 intron CG32365 + chr3L 7889065 intron CG32365 + chr3L_4_7885001 chr3L_7885001 RAL-336 309 chr3L 8208144 8208157 chr3L 8208258 8208289 5 128 1.0 0.5 0.8 2.8 145 chr3L 8208144 intergenic not near genes chr3L 8208216 intergenic not near genes chr3L 8208289 intergenic not near genes chr3L_5_8205001 chr3L_8205001 RAL-336 310 chr3L 8319446 8319473 chr3L 8319519 8319549 6 74 0.5 0.5 0.5 4.0 103 chr3L 8319446 intergenic CG43059 - chr3L 8319498 intergenic not near genes chr3L 8319549 intergenic not near genes chr3L_6_8315001 chr3L_8315001 RAL-336 311 chr3L 8615032 8615058 chr3L 8615109 8615137 4 78 2.0 0.0 1.0 2.0 105 chr3L 8615032 exon CG6282 + chr3L 8615084 intron CG6282 + chr3L 8615137 intron CG6282 + chr3L_4_8615001 chr3L_8615001 RAL-336 312 chr3L 8643578 8643590 chr3L 8643654 8643666 7 76 3.5 2.5 3.0 1.8 88 chr3L 8643578 3` UTR Cpr66D + chr3L 8643622 intergenic Cpr66D + chr3L 8643666 intergenic Cpr66D + chr3L_7_8640001 chr3L_8640001 RAL-336 313 chr3L 8643591 8643602 chr3L 8643651 8643678 4 72 3.0 2.5 2.8 1.1 87 chr3L 8643591 intergenic Cpr66D + chr3L 8643634 intergenic Cpr66D + chr3L 8643678 intergenic Cpr66D + chr3L_4_8640001 chr3L_8640001 RAL-336 314 chr3L 8824583 8824601 chr3L 8824656 8824689 8 82 2.5 0.5 1.5 3.2 106 chr3L 8824583 intergenic not near genes chr3L 8824636 intergenic not near genes chr3L 8824689 intergenic not near genes chr3L_8_8820001 chr3L_8820001 RAL-336 315 chr3L 8849212 8849236 chr3L 8849292 8849315 6 78 1.5 1.0 1.2 2.7 103 chr3L 8849212 intron dally + chr3L 8849264 intron dally + chr3L 8849315 intron dally + chr3L_6_8845001 chr3L_8845001 RAL-336 316 chr3L 9013691 9013691 chr3L 18417066 18417066 4 9403375 22.5 5.0 13.8 0.3 9403375 chr3L 9013691 intron Doc2 - chr3L 13715378 intron bru-3 - chr3L 18417066 intergenic not near genes chr3L_4_13715001 chr3L_13715001 RAL-336 317 chr3L 9067319 9067342 chr3L 9067398 9067421 4 79 0.5 2.0 1.2 1.8 102 chr3L 9067319 3` UTR CG4911 - chr3L 9067370 3` UTR CG4911 - chr3L 9067421 3` UTR CG4911 - chr3L_4_9065001 chr3L_9065001 RAL-336 318 chr3L 9113531 9113558 chr3L 9113608 9113635 8 76 4.5 5.0 4.8 1.4 104 chr3L 9113531 intron bol - chr3L 9113583 intron bol - chr3L 9113635 intron bol - chr3L_8_9110001 chr3L_9110001 RAL-336 319 chr3L 9219244 9219277 chr3L 9219915 9219929 jockey 5 666 2.0 1.5 1.8 1.8 685 chr3L 9219244 intergenic not near genes chr3L 9219586 intergenic not near genes chr3L 9219929 intergenic not near genes chr3L_5_9215001 chr3L_9215001 RAL-336 320 chr3L 9270619 9270642 chr3L 9278374 9278375 roo 4 7749 1.5 1.5 1.5 1.6 7756 chr3L 9270619 intron GluRIB + chr3L 9274497 intron GluRIB + chr3L 9278375 intron GluRIB + chr3L_4_9270001 chr3L_9270001 RAL-336 321 chr3L 9320412 9320428 chr3L 9320493 9320507 4 80 4.0 2.5 3.2 1.0 95 chr3L 9320412 intergenic not near genes chr3L 9320460 intergenic not near genes chr3L 9320507 intergenic not near genes chr3L_4_9320001 chr3L_9320001 RAL-336 322 chr3L 9443515 9443537 chr3L 9445306 9445327 S-element 7 1788 3.0 4.0 3.5 1.6 1812 chr3L 9443515 intron CG33926 + chr3L 9444421 intron CG33926 + chr3L 9445327 intron CG33926 + chr3L_7_9440001 chr3L_9440001 RAL-336 323 chr3L 9510910 9510957 chr3L 9511003 9511036 5 84 0.5 3.0 1.8 1.8 126 chr3L 9510910 intron RpS9 - chr3L 9510973 intron RpS9 - chr3L 9511036 intron RpS9 - chr3L_5_9510001 chr3L_9510001 RAL-336 324 chr3L 9595867 9595893 chr3L 9596085 9596119 15 221 3.5 3.0 3.2 3.6 252 chr3L 9595867 3` UTR CG42673 + chr3L 9595993 3` UTR CG42673 + chr3L 9596119 3` UTR CG42673 + chr3L_15_9595001 chr3L_9595001 RAL-336 325 chr3L 9637858 9637887 chr3L 9637939 9637956 12 80 2.0 3.0 2.5 3.4 98 chr3L 9637858 intron fry - chr3L 9637907 intron fry - chr3L 9637956 intron fry - chr3L_12_9635001 chr3L_9635001 RAL-336 326 chr3L 9639034 9639060 chr3L 9639119 9639145 5 85 1.0 4.0 2.5 1.4 111 chr3L 9639034 intron fry - chr3L 9639090 intron fry - chr3L 9639145 intron fry - chr3L_5_9635001 chr3L_9635001 RAL-336 327 chr3L 9831709 9831738 chr3L 9831789 9831819 10 80 0.0 2.0 1.0 5.0 110 chr3L 9831709 intron CG43897 + chr3L 9831764 intron CG43897 + chr3L 9831819 intron CG43897 + chr3L_10_9830001 chr3L_9830001 RAL-336 328 chr3L 9917530 9917545 chr3L 9917627 9917642 4 97 1.0 0.0 0.5 2.7 112 chr3L 9917530 intron CG34356 + chr3L 9917586 intron CG34356 + chr3L 9917642 intron CG34356 + chr3L_4_9915001 chr3L_9915001 RAL-336 329 chr3L 10099167 10099186 chr3L 10099276 10099299 5 112 1.5 2.5 2.0 1.7 132 chr3L 10099167 intron dpr6 + chr3L 10099233 intron dpr6 + chr3L 10099299 intron dpr6 + chr3L_5_10095001 chr3L_10095001 RAL-336 330 chr3L 10222745 10222777 chr3L 10222825 10222857 4 80 0.0 4.0 2.0 1.3 112 chr3L 10222745 intron scramb1 - chr3L 10222801 intron scramb1 - chr3L 10222857 intron scramb1 - chr3L_4_10220001 chr3L_10220001 RAL-336 331 chr3L 10621847 10621872 chr3L 10621933 10621958 5 87 1.0 1.5 1.2 2.3 111 chr3L 10621847 intergenic not near genes chr3L 10621902 intergenic not near genes chr3L 10621958 intergenic not near genes chr3L_5_10620001 chr3L_10620001 RAL-336 332 chr3L 11588732 11588758 chr3L 11588888 11588914 8 154 0.5 1.5 1.0 4.0 182 chr3L 11588732 intergenic not near genes chr3L 11588823 intergenic not near genes chr3L 11588914 intergenic not near genes chr3L_8_11585001 chr3L_11585001 RAL-336 333 chr3L 11678102 11678120 chr3L 11678189 11678206 4 87 1.0 2.0 1.5 1.6 104 chr3L 11678102 intron CG32085 - chr3L 11678154 intron CG32085 - chr3L 11678206 intron CG32085 - chr3L_4_11675001 chr3L_11675001 RAL-336 334 chr3L 11723091 11723117 chr3L 11727883 11727891 Doc 5 4790 2.5 2.5 2.5 1.4 4800 chr3L 11723091 3` UTR Bmcp + chr3L 11725491 intron Bmcp + chr3L 11727891 3` UTR Bmcp + chr3L_5_11725001 chr3L_11725001 RAL-336 335 chr3L 11744013 11744042 chr3L 11744121 11744139 6 105 3.5 0.0 1.8 2.1 126 chr3L 11744013 exon CG6024 - chr3L 11744076 intron CG6024 - chr3L 11744139 intron CG6024 - chr3L_6_11740001 chr3L_11740001 RAL-336 336 chr3L 802565 802566 chr3L 11777678 11777678 5 10975112 9.5 20.5 15.0 0.3 10975113 chr3L 802565 intergenic not near genes chr3L 6290122 intergenic not near genes chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_5_6290001 chr3L_6290001 RAL-336 337 chr3L 7749470 7749471 chr3L 11777678 11777678 7 4028207 7.0 20.5 13.8 0.5 4028208 chr3L 7749470 intron,3` UTR CG32373 +,CG13685 + chr3L 9763574 5` UTR CG8177 + chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_7_9760001 chr3L_9760001 RAL-336 338 chr3L 11943496 11943516 chr3L 11943597 11943617 4 101 1.5 1.0 1.2 1.8 121 chr3L 11943496 intergenic Rpt4R +,CG5883 - chr3L 11943556 intergenic Rpt4R +,CG5883 - chr3L 11943617 intergenic CG5883 -,Rpt4R + chr3L_4_11940001 chr3L_11940001 RAL-336 339 chr3L 12052706 12052738 chr3L 12052795 12052826 6 89 2.0 2.5 2.2 1.9 120 chr3L 12052706 intron rols - chr3L 12052766 intron rols - chr3L 12052826 intron rols - chr3L_6_12050001 chr3L_12050001 RAL-336 340 chr3L 12075425 12075449 chr3L 12075514 12075538 4 88 0.5 0.0 0.2 3.3 113 chr3L 12075425 intron Sema-5c - chr3L 12075482 intron Sema-5c - chr3L 12075538 intron Sema-5c - chr3L_4_12075001 chr3L_12075001 RAL-336 341 chr3L 12119762 12119784 chr3L 12119857 12119881 9 97 2.0 0.5 1.2 4.1 119 chr3L 12119762 3` UTR ssp + chr3L 12119822 intergenic ssp +,CG11560 + chr3L 12119881 intergenic ssp +,CG11560 + chr3L_9_12115001 chr3L_12115001 RAL-336 342 chr3L 12177164 12177179 chr3L 12177243 12177258 5 79 0.5 0.5 0.5 3.3 94 chr3L 12177164 intergenic CAH2 + chr3L 12177211 intergenic CAH2 + chr3L 12177258 intergenic CAH2 + chr3L_5_12175001 chr3L_12175001 RAL-336 343 chr3L 12229351 12229356 chr3L 12229423 12229455 6 86 1.5 0.0 0.8 3.3 104 chr3L 12229351 intron app - chr3L 12229403 intron app - chr3L 12229455 intron app - chr3L_6_12225001 chr3L_12225001 RAL-336 344 chr3L 12388073 12388102 chr3L 12388157 12388186 9 84 1.5 2.5 2.0 3.0 113 chr3L 12388073 intron Ncc69 - chr3L 12388130 intron Ncc69 - chr3L 12388186 intron Ncc69 - chr3L_9_12385001 chr3L_12385001 RAL-336 345 chr3L 12578044 12578068 chr3L 12578132 12578153 4 87 0.5 2.0 1.2 1.8 109 chr3L 12578044 intergenic not near genes chr3L 12578098 intergenic not near genes chr3L 12578153 intergenic not near genes chr3L_4_12575001 chr3L_12575001 RAL-336 346 chr3L 12610997 12611012 chr3L 12611243 12611258 6 246 0.5 0.5 0.5 4.0 261 chr3L 12610997 intron caup + chr3L 12611128 intron caup + chr3L 12611258 intron caup + chr3L_6_12610001 chr3L_12610001 RAL-336 347 chr3L 12788417 12788435 chr3L 12788537 12788554 6 120 2.0 0.5 1.2 2.7 137 chr3L 12788417 intron Atg1 - chr3L 12788486 intron Atg1 - chr3L 12788554 exon Atg1 - chr3L_6_12785001 chr3L_12785001 RAL-336 348 chr3L 13525173 13525182 chr3L 13532951 13532977 roo 7 7792 3.0 1.5 2.2 2.2 7804 chr3L 13525173 intergenic not near genes chr3L 13529075 intergenic not near genes chr3L 13532977 intergenic not near genes chr3L_7_13525001 chr3L_13525001 RAL-336 349 chr3L 14134804 14134832 chr3L 14134886 14134910 6 81 1.0 2.0 1.5 2.4 106 chr3L 14134804 intergenic not near genes chr3L 14134857 intergenic not near genes chr3L 14134910 intergenic not near genes chr3L_6_14130001 chr3L_14130001 RAL-336 350 chr3L 14522101 14522124 chr3L 14522199 14522222 6 99 1.5 0.0 0.8 3.3 121 chr3L 14522101 intron bbg - chr3L 14522162 intron bbg - chr3L 14522222 intron bbg - chr3L_6_14520001 chr3L_14520001 RAL-336 351 chr3L 14721187 14721210 chr3L 14723030 14723053 Rt1c 4 1843 0.0 0.5 0.2 3.3 1866 chr3L 14721187 intron ome + chr3L 14722120 intron ome + chr3L 14723053 intron ome + chr3L_4_14720001 chr3L_14720001 RAL-336 352 chr3L 14758356 14758381 chr3L 14758442 14758468 5 85 1.5 1.0 1.2 2.3 112 chr3L 14758356 intron Trl - chr3L 14758412 intron Trl - chr3L 14758468 intron Trl - chr3L_5_14755001 chr3L_14755001 RAL-336 353 chr3L 15100435 15100468 chr3L 15100524 15100553 4 80 0.5 2.5 1.5 1.6 118 chr3L 15100435 intron,3` UTR CTPsyn +,CR43972 - chr3L 15100494 intron,3` UTR CTPsyn +,CR43972 - chr3L 15100553 intron,3` UTR CTPsyn +,CR43972 - chr3L_4_15100001 chr3L_15100001 RAL-336 354 chr3L 15273340 15273361 chr3L 15273486 15273507 7 146 0.5 1.5 1.0 3.5 167 chr3L 15273340 intergenic not near genes chr3L 15273424 intergenic not near genes chr3L 15273507 intergenic not near genes chr3L_7_15270001 chr3L_15270001 RAL-336 355 chr3L 15883194 15883219 chr3L 15883484 15883512 4 292 0.5 1.0 0.8 2.2 318 chr3L 15883194 intron pHCl - chr3L 15883353 intron pHCl - chr3L 15883512 intron pHCl - chr3L_4_15880001 chr3L_15880001 RAL-336 356 chr3L 15894247 15894260 chr3L 15894341 15894354 6 94 3.5 3.0 3.2 1.4 107 chr3L 15894247 intron pHCl - chr3L 15894300 intron pHCl - chr3L 15894354 intron pHCl - chr3L_6_15890001 chr3L_15890001 RAL-336 357 chr3L 15899232 15899260 chr3L 15899793 15899803 jockey 4 559 2.0 4.5 3.2 1.0 571 chr3L 15899232 intergenic pHCl - chr3L 15899518 intergenic pHCl - chr3L 15899803 intergenic sff - chr3L_4_15895001 chr3L_15895001 RAL-336 358 chr3L 16184088 16184109 chr3L 16188932 16188952 X-element 11 4843 2.5 3.0 2.8 2.9 4864 chr3L 16184088 intergenic not near genes chr3L 16186520 intergenic not near genes chr3L 16188952 intergenic not near genes chr3L_11_16185001 chr3L_16185001 RAL-336 359 chr3L 16304875 16304894 chr3L 16304952 16304968 6 76 1.5 3.5 2.5 1.7 93 chr3L 16304875 intergenic CG43249 +,CG13043 - chr3L 16304922 intergenic CG43249 +,CG13043 - chr3L 16304968 intergenic CG13043 -,CG43249 + chr3L_6_16300001 chr3L_16300001 RAL-336 360 chr3L 16360885 16360917 chr3L 16360962 16360995 4 73 2.0 2.5 2.2 1.2 110 chr3L 16360885 intron CG45057 - chr3L 16360940 intron CG45057 - chr3L 16360995 intron CG45057 - chr3L_4_16360001 chr3L_16360001 RAL-336 361 chr3L 16493976 16494011 chr3L 16494493 16494525 jockey 12 512 7.0 4.5 5.8 1.8 549 chr3L 16493976 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494250 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494525 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_12_16490001 chr3L_16490001 RAL-336 362 chr3L 16616508 16616538 chr3L 16621836 16621847 297 8 5325 3.0 1.0 2.0 2.7 5339 chr3L 16616508 3` UTR Abl - chr3L 16619178 3` UTR Abl - chr3L 16621847 3` UTR Abl - chr3L_8_16615001 chr3L_16615001 RAL-336 363 chr3L 16800578 16800613 chr3L 16800716 16800751 12 136 2.5 2.5 2.5 3.4 173 chr3L 16800578 intron CG9674 - chr3L 16800664 intron CG9674 - chr3L 16800751 intron CG9674 - chr3L_12_16800001 chr3L_16800001 RAL-336 364 chr3L 16945735 16945756 chr3L 16954886 16954890 roo 4 9146 2.0 0.5 1.2 1.8 9155 chr3L 16945735 exon Obp73a + chr3L 16950312 intergenic not near genes chr3L 16954890 5` UTR Nc73EF + chr3L_4_16950001 chr3L_16950001 RAL-336 365 chr3L 17120652 17120668 chr3L 17120728 17120744 4 74 3.0 1.0 2.0 1.3 92 chr3L 17120652 intron Rbp6 - chr3L 17120698 intron Rbp6 - chr3L 17120744 intron Rbp6 - chr3L_4_17120001 chr3L_17120001 RAL-336 366 chr3L 17510739 17510766 chr3L 17510822 17510850 9 83 2.0 3.5 2.8 2.4 111 chr3L 17510739 exon Oatp74D + chr3L 17510794 intron Oatp74D + chr3L 17510850 intron Oatp74D + chr3L_9_17510001 chr3L_17510001 RAL-336 367 chr3L 17516982 17517007 chr3L 17524540 17524564 412 4 7556 3.5 3.0 3.2 1.0 7582 chr3L 17516982 intron CG7564 + chr3L 17520773 intron CG7564 + chr3L 17524564 3` UTR CG7564 + chr3L_4_17520001 chr3L_17520001 RAL-336 368 chr3L 17580588 17580611 chr3L 17580764 17580787 8 176 1.0 0.0 0.5 5.3 199 chr3L 17580588 intron Eip74EF - chr3L 17580688 intron Eip74EF - chr3L 17580787 intron Eip74EF - chr3L_8_17580001 chr3L_17580001 RAL-336 369 chr3L 17730861 17730881 chr3L 17738191 17738210 mdg1 8 7329 0.5 1.5 1.0 4.0 7349 chr3L 17730861 intron Ccn + chr3L 17734536 intron Ccn + chr3L 17738210 intron Ccn + chr3L_8_17730001 chr3L_17730001 RAL-336 370 chr3L 17789845 17789871 chr3L 17789918 17789947 5 71 0.5 1.5 1.0 2.5 102 chr3L 17789845 intergenic not near genes chr3L 17789896 intergenic not near genes chr3L 17789947 intergenic not near genes chr3L_5_17785001 chr3L_17785001 RAL-336 371 chr3L 17799811 17799841 chr3L 17801597 17801625 S-element 9 1786 1.5 1.0 1.2 4.1 1814 chr3L 17799811 intron NUCB1 - chr3L 17800718 intron NUCB1 - chr3L 17801625 intron NUCB1 - chr3L_9_17800001 chr3L_17800001 RAL-336 372 chr3L 18029960 18029982 chr3L 18030037 18030053 4 76 0.5 0.0 0.2 3.3 93 chr3L 18029960 intron Eip75B - chr3L 18030006 intron Eip75B - chr3L 18030053 intron Eip75B - chr3L_4_18030001 chr3L_18030001 RAL-336 373 chr3L 18057974 18058011 chr3L 18058075 18058084 7 94 1.0 2.5 1.8 2.5 110 chr3L 18057974 intron Eip75B - chr3L 18058029 intron Eip75B - chr3L 18058084 intron Eip75B - chr3L_7_18055001 chr3L_18055001 RAL-336 374 chr3L 18066836 18066856 chr3L 18066959 18066975 4 124 0.5 2.5 1.5 1.6 139 chr3L 18066836 intergenic not near genes chr3L 18066906 intergenic not near genes chr3L 18066975 intergenic not near genes chr3L_4_18065001 chr3L_18065001 RAL-336 375 chr3L 18122632 18122638 chr3L 18122709 18122715 4 77 1.5 2.0 1.8 1.4 83 chr3L 18122632 intergenic not near genes chr3L 18122674 intergenic not near genes chr3L 18122715 intergenic not near genes chr3L_4_18120001 chr3L_18120001 RAL-336 376 chr3L 9013689 9013695 chr3L 18417066 18417066 11 9403374 22.5 5.0 13.8 0.7 9403377 chr3L 9013689 intron Doc2 - chr3L 13715378 intron bru-3 - chr3L 18417066 intergenic not near genes chr3L_11_13715001 chr3L_13715001 RAL-336 377 chr3L 18528629 18528660 chr3L 18537788 18537821 roo 5 9161 2.0 0.5 1.2 2.3 9192 chr3L 18528629 intergenic not near genes chr3L 18533225 intergenic not near genes chr3L 18537821 intergenic not near genes chr3L_5_18530001 chr3L_18530001 RAL-336 378 chr3L 18723634 18723660 chr3L 18723738 18723764 11 104 1.5 0.5 1.0 5.5 130 chr3L 18723634 intergenic CR43985 +,CG12477 - chr3L 18723699 intergenic CR43985 +,CG12477 - chr3L 18723764 intergenic CR43985 +,CG12477 - chr3L_11_18720001 chr3L_18720001 RAL-336 379 chr3L 18770655 18770674 chr3L 18770740 18770759 4 84 0.5 1.0 0.8 2.2 104 chr3L 18770655 intron ftz-f1 - chr3L 18770707 intron ftz-f1 - chr3L 18770759 intron ftz-f1 - chr3L_4_18770001 chr3L_18770001 RAL-336 380 chr3L 18772408 18772439 chr3L 18781089 18781120 roo 9 8680 2.0 4.5 3.2 2.1 8712 chr3L 18772408 intron ftz-f1 - chr3L 18776764 intron ftz-f1 - chr3L 18781120 intron ftz-f1 - chr3L_9_18775001 chr3L_18775001 RAL-336 381 chr3L 18810143 18810172 chr3L 18810220 18810249 5 76 1.0 1.0 1.0 2.5 106 chr3L 18810143 intron CG14073 - chr3L 18810196 intron CG14073 - chr3L 18810249 intron CG14073 - chr3L_5_18810001 chr3L_18810001 RAL-336 382 chr3L 18839741 18839768 chr3L 18839824 18839850 4 83 1.0 3.0 2.0 1.3 109 chr3L 18839741 intron Indy - chr3L 18839796 intron Indy - chr3L 18839850 intron Indy - chr3L_4_18835001 chr3L_18835001 RAL-336 383 chr3L 19008851 19008872 chr3L 19009187 19009205 jockey 4 336 1.5 1.0 1.2 1.8 354 chr3L 19008851 intron nkd - chr3L 19009028 intron nkd - chr3L 19009205 intron nkd - chr3L_4_19005001 chr3L_19005001 RAL-336 384 chr3L 19037098 19037122 chr3L 19037184 19037205 6 85 1.0 1.0 1.0 3.0 107 chr3L 19037098 intron nkd - chr3L 19037152 intron nkd - chr3L 19037205 intron nkd - chr3L_6_19035001 chr3L_19035001 RAL-336 385 chr3L 19117051 19117075 chr3L 19124498 19124521 mdg1 5 7444 2.5 3.5 3.0 1.2 7470 chr3L 19117051 intron CG14082 - chr3L 19120786 intron CG14082 - chr3L 19124521 intron CG14082 - chr3L_5_19120001 chr3L_19120001 RAL-336 386 chr3L 19127742 19127764 chr3L 19127829 19127836 4 82 0.5 0.5 0.5 2.7 94 chr3L 19127742 intron CG14082 - chr3L 19127789 intron CG14082 - chr3L 19127836 intron CG14082 - chr3L_4_19125001 chr3L_19125001 RAL-336 387 chr3L 19159842 19159871 chr3L 19159937 19159959 4 93 1.5 2.5 2.0 1.3 117 chr3L 19159842 intron fz2 - chr3L 19159900 intron fz2 - chr3L 19159959 intron fz2 - chr3L_4_19155001 chr3L_19155001 RAL-336 388 chr3L 19262218 19262241 chr3L 19262296 19262304 6 78 0.0 2.0 1.0 3.0 86 chr3L 19262218 3` UTR Bet1 + chr3L 19262261 3` UTR,3` UTR Bet1 +,Max - chr3L 19262304 3` UTR,3` UTR Bet1 +,Max - chr3L_6_19260001 chr3L_19260001 RAL-336 389 chr3L 19423053 19423079 chr3L 19423144 19423170 5 87 1.0 4.0 2.5 1.4 117 chr3L 19423053 3` UTR CR32205 - chr3L 19423112 3` UTR CR32205 - chr3L 19423170 3` UTR CR32205 - chr3L_5_19420001 chr3L_19420001 RAL-336 390 chr3L 19426761 19426781 chr3L 19426827 19426859 4 74 2.5 2.5 2.5 1.1 98 chr3L 19426761 intergenic not near genes chr3L 19426810 intergenic not near genes chr3L 19426859 intergenic not near genes chr3L_4_19425001 chr3L_19425001 RAL-336 391 chr3L 19820302 19820311 chr3L 19827849 19827860 412 4 7548 2.5 1.5 2.0 1.3 7558 chr3L 19820302 intron Deaf1 + chr3L 19824081 intron Deaf1 + chr3L 19827860 intron Deaf1 + chr3L_4_19820001 chr3L_19820001 RAL-336 392 chr3L 19848505 19848521 chr3L 19857695 19857711 roo 4 9190 3.5 3.0 3.2 1.0 9206 chr3L 19848505 intron Papss + chr3L 19853108 intron Papss + chr3L 19857711 intron Papss + chr3L_4_19850001 chr3L_19850001 RAL-336 393 chr3L 20128207 20128223 chr3L 20128375 20128396 8 170 4.5 1.5 3.0 2.0 189 chr3L 20128207 intergenic not near genes chr3L 20128302 intergenic not near genes chr3L 20128396 intergenic not near genes chr3L_8_20125001 chr3L_20125001 RAL-336 394 chr3L 20157973 20157997 chr3L 20158065 20158094 7 93 2.5 2.0 2.2 2.2 121 chr3L 20157973 intron CG42674 - chr3L 20158034 intron CG42674 - chr3L 20158094 intron CG42674 - chr3L_7_20155001 chr3L_20155001 RAL-336 395 chr3L 20310734 20310757 chr3L 20310813 20310836 4 79 3.0 1.0 2.0 1.3 102 chr3L 20310734 intron polo + chr3L 20310785 intron polo + chr3L 20310836 intron polo + chr3L_4_20310001 chr3L_20310001 RAL-336 396 chr3L 20386940 20386969 chr3L 20387042 20387068 6 102 1.5 0.5 1.0 3.0 128 chr3L 20386940 intron fbl + chr3L 20387004 intron fbl + chr3L 20387068 intron fbl + chr3L_6_20385001 chr3L_20385001 RAL-336 397 chr3L 20426203 20426227 chr3L 20426371 20426395 8 168 4.5 5.0 4.8 1.4 192 chr3L 20426203 3` UTR CG5274 - chr3L 20426299 3` UTR CG5274 - chr3L 20426395 3` UTR CG5274 - chr3L_8_20425001 chr3L_20425001 RAL-336 398 chr3L 20451274 20451304 chr3L 20451515 20451542 4 240 3.0 2.5 2.8 1.1 268 chr3L 20451274 intron CG5199 - chr3L 20451408 intron CG5199 - chr3L 20451542 intron CG5199 - chr3L_4_20450001 chr3L_20450001 RAL-336 399 chr3L 20472496 20472508 chr3L 20472611 20472625 5 115 3.5 5.0 4.2 1.0 129 chr3L 20472496 intron CG32428 - chr3L 20472560 intron CG32428 - chr3L 20472625 intron CG32428 - chr3L_5_20470001 chr3L_20470001 RAL-336 400 chr3L 21014918 21014946 chr3L 21023398 21023401 Tirant 4 8471 2.5 2.0 2.2 1.2 8483 chr3L 21014918 intron skd - chr3L 21019160 intron skd - chr3L 21023401 intron skd - chr3L_4_21015001 chr3L_21015001 RAL-336 401 chr3L 21067961 21067966 chr3L 21068039 21068046 4 78 3.0 2.0 2.5 1.1 85 chr3L 21067961 intron siz + chr3L 21068004 intron siz + chr3L 21068046 intron siz + chr3L_4_21065001 chr3L_21065001 RAL-336 402 chr3L 21067967 21067981 chr3L 21068035 21068061 5 77 1.0 1.5 1.2 2.3 94 chr3L 21067967 intron siz + chr3L 21068014 intron siz + chr3L 21068061 intron siz + chr3L_5_21065001 chr3L_21065001 RAL-336 403 chr3L 21243751 21243771 chr3L 21251314 21251326 412 4 7557 2.5 3.0 2.8 1.1 7575 chr3L 21243751 intron Eip78C + chr3L 21247538 intron Eip78C + chr3L 21251326 intron Eip78C + chr3L_4_21245001 chr3L_21245001 RAL-336 404 chr3L 21256535 21256564 chr3L 21256628 21256631 5 81 1.5 1.0 1.2 2.3 96 chr3L 21256535 intron Eip78C + chr3L 21256583 intron Eip78C + chr3L 21256631 intron Eip78C + chr3L_5_21255001 chr3L_21255001 RAL-336 405 chr3L 21306145 21306179 chr3L 21315304 21315338 roo 5 9159 1.0 0.5 0.8 2.8 9193 chr3L 21306145 3` UTR,3` UTR CG7632 +,Pc - chr3L 21310742 intron Pc - chr3L 21315338 3` UTR Pc - chr3L_5_21310001 chr3L_21310001 RAL-336 406 chr3L 21319530 21319548 chr3L 21319619 21319638 4 90 5.0 3.5 4.2 0.8 108 chr3L 21319530 5` UTR Rab26 + chr3L 21319584 5` UTR Rab26 + chr3L 21319638 5` UTR Rab26 + chr3L_4_21315001 chr3L_21315001 RAL-336 407 chr3L 21639200 21639226 chr3L 21639279 21639292 8 77 4.5 2.5 3.5 1.8 92 chr3L 21639200 intergenic CG32444 +,CG32445 + chr3L 21639246 intergenic CG32445 +,CG32444 + chr3L 21639292 intergenic CG32445 +,CG32444 + chr3L_8_21635001 chr3L_21635001 RAL-336 408 chr3L 21824463 21824470 chr3L 21824525 21824558 4 78 0.5 0.5 0.5 2.7 95 chr3L 21824463 3` UTR CG7407 + chr3L 21824510 3` UTR CG7407 + chr3L 21824558 3` UTR CG7407 + chr3L_4_21820001 chr3L_21820001 RAL-336 409 chr3L 21849500 21849520 chr3L 21849582 21849602 5 82 4.0 1.5 2.8 1.3 102 chr3L 21849500 intron mub + chr3L 21849551 intron mub + chr3L 21849602 intron mub + chr3L_5_21845001 chr3L_21845001 RAL-336 410 chr3L 21905487 21905514 chr3L 21905588 21905606 5 97 1.5 0.0 0.8 2.8 119 chr3L 21905487 intron mub + chr3L 21905546 intron mub + chr3L 21905606 intron mub + chr3L_5_21905001 chr3L_21905001 RAL-336 411 chr3L 21966488 21966507 chr3L 21966570 21966590 4 82 3.5 9.5 6.5 0.5 102 chr3L 21966488 intron CS-2 + chr3L 21966539 intron CS-2 + chr3L 21966590 intron CS-2 + chr3L_4_21965001 chr3L_21965001 RAL-336 412 chr3L 21972570 21972594 chr3L 21972728 21972751 8 156 4.0 5.0 4.5 1.5 181 chr3L 21972570 intron CG7470 + chr3L 21972660 intron CG7470 + chr3L 21972751 intron CG7470 + chr3L_8_21970001 chr3L_21970001 RAL-336 413 chr3L 22099674 22099704 chr3L 22105860 22105890 3S18 8 6185 5.5 2.0 3.8 1.7 6216 chr3L 22099674 intergenic not near genes chr3L 22102782 intergenic not near genes chr3L 22105890 intergenic not near genes chr3L_8_22100001 chr3L_22100001 RAL-336 414 chr3L 22130506 22130523 chr3L 22130652 22130669 6 145 3.0 4.5 3.8 1.2 163 chr3L 22130506 intergenic not near genes chr3L 22130588 intergenic not near genes chr3L 22130669 intergenic not near genes chr3L_6_22130001 chr3L_22130001 RAL-336 415 chr3L 22169453 22169489 chr3L 22169545 22169582 6 93 0.5 2.0 1.2 2.7 129 chr3L 22169453 intron olf413 + chr3L 22169518 intron olf413 + chr3L 22169582 intron olf413 + chr3L_6_22165001 chr3L_22165001 RAL-336 416 chr3L 22271137 22271162 chr3L 22271258 22271289 11 126 2.5 2.5 2.5 3.1 152 chr3L 22271137 intron Csp + chr3L 22271213 intron Csp + chr3L 22271289 intron Csp + chr3L_11_22270001 chr3L_22270001 RAL-336 417 chr3L 22275643 22275675 chr3L 22275838 22275864 9 194 1.0 1.0 1.0 4.5 221 chr3L 22275643 intron srpk79D + chr3L 22275754 intron srpk79D + chr3L 22275864 intron srpk79D + chr3L_9_22275001 chr3L_22275001 RAL-336 418 chr3L 22328061 22328089 chr3L 22328157 22328167 5 94 1.0 3.0 2.0 1.7 106 chr3L 22328061 intron Ten-m - chr3L 22328114 intron Ten-m - chr3L 22328167 intron Ten-m - chr3L_5_22325001 chr3L_22325001 RAL-336 419 chr3L 22447203 22447232 chr3L 22447294 22447323 10 89 1.5 6.5 4.0 2.0 120 chr3L 22447203 intergenic not near genes chr3L 22447263 intergenic not near genes chr3L 22447323 intergenic not near genes chr3L_10_22445001 chr3L_22445001 RAL-336 420 chr3L 22853468 22853718 chr3L 22853555 22853804 14 86 1.0 3.0 2.0 4.7 336 chr3L 22853468 5` UTR,5` UTR CR43426 +,CG32462 - chr3L 22853636 5` UTR CR43426 + chr3L 22853804 5` UTR CR43426 + chr3L_14_22850001 chr3L_22850001 RAL-336 421 chr3L 9307795 9307796 chr3L 22908066 22908066 4 13600270 0.5 19.0 9.8 0.4 13600271 chr3L 9307795 intergenic not near genes chr3L 16107930 intron Zn72D - chr3L 22908066 intergenic not near genes chr3L_4_16105001 chr3L_16105001 RAL-336 422 chr3L 18417066 18417066 chr3L 22908066 22908066 6 4491000 4.5 19.0 11.8 0.5 4491000 chr3L 18417066 intergenic not near genes chr3L 20662566 intergenic not near genes chr3L 22908066 intergenic not near genes chr3L_6_20660001 chr3L_20660001 RAL-336 423 chr3L 19220633 19220636 chr3L 22908066 22908066 11 3687432 5.0 19.0 12.0 0.8 3687433 chr3L 19220633 intron fz2 - chr3L 21064350 intron siz + chr3L 22908066 intergenic not near genes chr3L_11_21060001 chr3L_21060001 RAL-336 424 chr3L 22908066 22908066 chr3L 24821492 24821495 6 1913428 17.5 9.0 13.2 0.4 1913429 chr3L 22908066 intergenic not near genes chr3L 23864780 intron CG40470 - chr3L 24821495 intergenic not near genes chr3L_6_23860001 chr3L_23860001 RAL-336 425 chr3L 9307795 9307796 chr3L 22908067 22908067 6 13600272 0.5 19.0 9.8 0.6 13600272 chr3L 9307795 intergenic not near genes chr3L 16107931 intron Zn72D - chr3L 22908067 intergenic not near genes chr3L_6_16105001 chr3L_16105001 RAL-336 426 chr3L 18417066 18417066 chr3L 22908067 22908067 4 4491001 4.5 19.0 11.8 0.3 4491001 chr3L 18417066 intergenic not near genes chr3L 20662566 intergenic not near genes chr3L 22908067 intergenic not near genes chr3L_4_20660001 chr3L_20660001 RAL-336 427 chr3L 19220633 19220637 chr3L 22908067 22908067 10 3687432 5.0 19.0 12.0 0.8 3687434 chr3L 19220633 intron fz2 - chr3L 21064350 intron siz + chr3L 22908067 intergenic not near genes chr3L_10_21060001 chr3L_21060001 RAL-336 428 chr3L 25492945 25492950 chr3L 25493233 25493253 4 298 1.0 3.0 2.0 1.3 308 chr3L 25492945 intron CG41343 - chr3L 25493099 intron CG41343 - chr3L 25493253 intron CG41343 - chr3L_4_25490001 chr3L_25490001 RAL-336 429 chr3L 27413568 27413597 chr3L 27413684 27413685 6 111 1.0 2.0 1.5 2.4 117 chr3L 27413568 intron Dbp80 + chr3L 27413626 intron Dbp80 + chr3L 27413685 intron Dbp80 + chr3L_6_27410001 chr3L_27410001 RAL-336 430 chr3R 4366755 4366788 chr3R 4375138 4375171 roo 4 8383 2.5 0.5 1.5 1.6 8416 chr3R 4366755 3` UTR CG1090 + chr3R 4370963 intergenic not near genes chr3R 4375171 5` UTR CR44922 + chr3R_4_4370001 chr3R_4370001 RAL-336 431 chr3R 4408420 4408438 chr3R 4412724 4412736 Juan 5 4302 1.5 3.5 2.5 1.4 4316 chr3R 4408420 intron CG32944 - chr3R 4410578 intron CG32944 - chr3R 4412736 intron CG32944 - chr3R_5_4410001 chr3R_4410001 RAL-336 432 chr3R 4769159 4769191 chr3R 4769237 4769266 4 75 1.0 1.5 1.2 1.8 107 chr3R 4769159 intron,intron atms +,CG44098 - chr3R 4769212 intron,intron atms +,CG44098 - chr3R 4769266 intron,intron atms +,CG44098 - chr3R_4_4765001 chr3R_4765001 RAL-336 433 chr3R 4887485 4887504 chr3R 4894861 4894872 rover 5 7374 1.5 3.5 2.5 1.4 7387 chr3R 4887485 intergenic not near genes chr3R 4891178 intergenic not near genes chr3R 4894872 intergenic not near genes chr3R_5_4890001 chr3R_4890001 RAL-336 434 chr3R 5067981 5068010 chr3R 5073498 5073527 mdg3 7 5513 1.0 1.5 1.2 3.2 5546 chr3R 5067981 intergenic not near genes chr3R 5070754 intergenic not near genes chr3R 5073527 intergenic not near genes chr3R_7_5070001 chr3R_5070001 RAL-336 435 chr3R 5351909 5351932 chr3R 5352915 5352929 5 1000 16.0 17.0 16.5 0.3 1020 chr3R 5351909 intergenic not near genes chr3R 5352419 intergenic not near genes chr3R 5352929 intergenic not near genes chr3R_5_5350001 chr3R_5350001 RAL-336 436 chr3R 5471497 5471514 chr3R 5471590 5471611 6 97 4.0 2.5 3.2 1.4 114 chr3R 5471497 intron Snr1 + chr3R 5471554 intron Snr1 + chr3R 5471611 intron Snr1 + chr3R_6_5470001 chr3R_5470001 RAL-336 437 chr3R 5772377 5772399 chr3R 5772535 5772557 4 158 4.0 2.0 3.0 1.0 180 chr3R 5772377 intron CG2082 - chr3R 5772467 intron CG2082 - chr3R 5772557 intron CG2082 - chr3R_4_5770001 chr3R_5770001 RAL-336 438 chr3R 5809127 5809144 chr3R 5809368 5809385 pogo 5 239 1.0 3.0 2.0 1.7 258 chr3R 5809127 3` UTR CG11000 + chr3R 5809256 3` UTR CG11000 + chr3R 5809385 3` UTR CG11000 + chr3R_5_5805001 chr3R_5805001 RAL-336 439 chr3R 6048763 6048779 chr3R 6048861 6048883 6 103 3.0 2.0 2.5 1.7 120 chr3R 6048763 intergenic not near genes chr3R 6048823 intergenic not near genes chr3R 6048883 intergenic not near genes chr3R_6_6045001 chr3R_6045001 RAL-336 440 chr3R 6158517 6158539 chr3R 6167099 6167120 Tirant 5 8582 2.5 3.5 3.0 1.2 8603 chr3R 6158517 intergenic not near genes chr3R 6162818 intergenic not near genes chr3R 6167120 intergenic CG1077 + chr3R_5_6160001 chr3R_6160001 RAL-336 441 chr3R 6175176 6175207 chr3R 6182447 6182463 HMS-Beagle2 4 7268 1.0 1.5 1.2 1.8 7287 chr3R 6175176 intergenic Osi1 + chr3R 6178820 intron CR45194 + chr3R 6182463 intergenic CR45194 + chr3R_4_6175001 chr3R_6175001 RAL-336 442 chr3R 6494843 6494865 chr3R 6495032 6495059 5 193 1.5 0.0 0.8 2.8 216 chr3R 6494843 3` UTR CG15186 + chr3R 6494951 3` UTR CG15186 + chr3R 6495059 intergenic CG15186 + chr3R_5_6490001 chr3R_6490001 RAL-336 443 chr3R 6737502 6737532 chr3R 6739289 6739305 Doc 6 1784 4.0 2.0 3.0 1.5 1803 chr3R 6737502 intron pb - chr3R 6738404 intron pb - chr3R 6739305 intron pb - chr3R_6_6735001 chr3R_6735001 RAL-336 444 chr3R 7103294 7103307 chr3R 7103370 7103380 4 75 1.0 2.0 1.5 1.6 86 chr3R 7103294 intron Alh - chr3R 7103337 intron Alh - chr3R 7103380 intron Alh - chr3R_4_7100001 chr3R_7100001 RAL-336 445 chr3R 7105323 7105350 chr3R 7105406 7105433 4 83 0.0 2.5 1.2 1.8 110 chr3R 7105323 intron Alh - chr3R 7105378 intron Alh - chr3R 7105433 intron Alh - chr3R_4_7105001 chr3R_7105001 RAL-336 446 chr3R 7173687 7173706 chr3R 7173767 7173786 4 80 1.0 3.0 2.0 1.3 99 chr3R 7173687 intron sas + chr3R 7173736 intron sas + chr3R 7173786 intron sas + chr3R_4_7170001 chr3R_7170001 RAL-336 447 chr3R 7694575 7694590 chr3R 7713636 7713651 invader3 4 19061 1.5 1.5 1.5 1.6 19076 chr3R 7694575 3` UTR Nlg1 + chr3R 7704113 intergenic not near genes chr3R 7713651 intergenic not near genes chr3R_4_7700001 chr3R_7700001 RAL-336 448 chr3R 8049052 8049062 chr3R 8049626 8049636 4 574 3.5 1.5 2.5 1.1 584 chr3R 8049052 intron CG43060 + chr3R 8049344 intron,intron CG43060 +,CG43618 + chr3R 8049636 intron CG43060 + chr3R_4_8045001 chr3R_8045001 RAL-336 449 chr3R 8090280 8090299 chr3R 8090457 8090475 4 176 0.5 0.0 0.2 3.3 195 chr3R 8090280 5` UTR CR44330 + chr3R 8090378 intergenic CR44330 + chr3R 8090475 intergenic CR44330 + chr3R_4_8090001 chr3R_8090001 RAL-336 450 chr3R 8101768 8101791 chr3R 8104852 8104875 G2 5 3083 0.0 0.5 0.2 4.2 3107 chr3R 8101768 exon CG7900 + chr3R 8103322 intron CG7900 + chr3R 8104875 3` UTR CG7900 + chr3R_5_8100001 chr3R_8100001 RAL-336 451 chr3R 8182650 8182689 chr3R 8182744 8182783 7 94 0.0 0.5 0.2 5.8 133 chr3R 8182650 intergenic not near genes chr3R 8182716 intergenic not near genes chr3R 8182783 intergenic not near genes chr3R_7_8180001 chr3R_8180001 RAL-336 452 chr3R 8339246 8339247 chr3R 21907534 21907536 17 13568288 9.0 8.5 8.8 1.7 13568290 chr3R 8339246 intergenic not near genes chr3R 15123391 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_17_15120001 chr3R_15120001 RAL-336 453 chr3R 8403020 8403036 chr3R 8412180 8412199 roo 4 9160 0.5 2.5 1.5 1.6 9179 chr3R 8403020 intron CG45263 - chr3R 8407610 intron CG45263 - chr3R 8412199 intron CG45263 - chr3R_4_8405001 chr3R_8405001 RAL-336 454 chr3R 8537827 8537850 chr3R 8537910 8537928 8 80 4.5 2.0 3.2 1.9 101 chr3R 8537827 intergenic not near genes chr3R 8537878 intergenic not near genes chr3R 8537928 intergenic not near genes chr3R_8_8535001 chr3R_8535001 RAL-336 455 chr3R 8570482 8570508 chr3R 8575117 8575118 HMS-Beagle 5 4631 2.0 1.0 1.5 2.0 4636 chr3R 8570482 intergenic not near genes chr3R 8572800 intergenic not near genes chr3R 8575118 intergenic not near genes chr3R_5_8570001 chr3R_8570001 RAL-336 456 chr3R 9141171 9141175 chr3R 9141247 9141264 4 86 2.5 1.5 2.0 1.3 93 chr3R 9141171 intron pum - chr3R 9141218 intron pum - chr3R 9141264 intron pum - chr3R_4_9140001 chr3R_9140001 RAL-336 457 chr3R 9361823 9361839 chr3R 9362064 9362078 pogo 4 240 0.5 1.5 1.0 2.0 255 chr3R 9361823 3` UTR CG45050 + chr3R 9361950 3` UTR CG45050 + chr3R 9362078 3` UTR CG45050 + chr3R_4_9360001 chr3R_9360001 RAL-336 458 chr3R 9434707 9434725 chr3R 9434775 9434806 6 82 1.0 0.5 0.8 3.3 99 chr3R 9434707 intron ps + chr3R 9434756 intron ps + chr3R 9434806 intron ps + chr3R_6_9430001 chr3R_9430001 RAL-336 459 chr3R 9644582 9644613 chr3R 9644663 9644692 14 80 2.0 1.0 1.5 5.6 110 chr3R 9644582 intron Dh44 + chr3R 9644637 intron Dh44 + chr3R 9644692 intron Dh44 + chr3R_14_9640001 chr3R_9640001 RAL-336 460 chr3R 9702263 9702287 chr3R 9702339 9702354 5 74 1.0 1.5 1.2 2.3 91 chr3R 9702263 intron Unc-115a - chr3R 9702308 intron Unc-115a - chr3R 9702354 intron Unc-115a - chr3R_5_9700001 chr3R_9700001 RAL-336 461 chr3R 9874444 9874466 chr3R 9874524 9874546 6 79 4.0 0.5 2.2 1.9 102 chr3R 9874444 intergenic Glut4EF + chr3R 9874495 intergenic Glut4EF + chr3R 9874546 intergenic Glut4EF + chr3R_6_9870001 chr3R_9870001 RAL-336 462 chr3R 10073772 10073802 chr3R 10073881 10073910 4 109 3.0 3.5 3.2 1.0 138 chr3R 10073772 intergenic nerfin-2 +,CG5361 - chr3R 10073841 3` UTR CG5361 - chr3R 10073910 exon CG5361 - chr3R_4_10070001 chr3R_10070001 RAL-336 463 chr3R 10171213 10171233 chr3R 10171296 10171317 4 84 1.5 1.0 1.2 1.8 104 chr3R 10171213 3` UTR CG12814 - chr3R 10171265 3` UTR CG12814 - chr3R 10171317 3` UTR CG12814 - chr3R_4_10170001 chr3R_10170001 RAL-336 464 chr3R 10308364 10308389 chr3R 10308450 10308475 10 84 4.0 4.0 4.0 2.0 111 chr3R 10308364 3` UTR,3` UTR CG43143 +,CG6293 - chr3R 10308420 3` UTR,3` UTR CG43143 +,CG6293 - chr3R 10308475 3` UTR CG6293 - chr3R_10_10305001 chr3R_10305001 RAL-336 465 chr3R 10906842 10906848 chr3R 10906918 10906923 4 76 2.0 3.0 2.5 1.1 81 chr3R 10906842 intergenic not near genes chr3R 10906882 intergenic not near genes chr3R 10906923 intergenic not near genes chr3R_4_10905001 chr3R_10905001 RAL-336 466 chr3R 10920044 10920077 chr3R 10920122 10920154 5 78 0.5 0.0 0.2 4.2 110 chr3R 10920044 intergenic not near genes chr3R 10920099 intergenic not near genes chr3R 10920154 intergenic not near genes chr3R_5_10920001 chr3R_10920001 RAL-336 467 chr3R 11102326 11102346 chr3R 11102407 11102427 4 80 3.0 2.5 2.8 1.1 101 chr3R 11102326 intergenic not near genes chr3R 11102376 intergenic not near genes chr3R 11102427 intergenic not near genes chr3R_4_11100001 chr3R_11100001 RAL-336 468 chr3R 11303081 11303113 chr3R 11303161 11303186 10 79 3.5 1.0 2.2 3.1 105 chr3R 11303081 intron CR31386 - chr3R 11303134 intron CR31386 - chr3R 11303186 intron CR31386 - chr3R_10_11300001 chr3R_11300001 RAL-336 469 chr3R 11472409 11472427 chr3R 11472489 11472492 6 76 1.5 0.5 1.0 3.0 83 chr3R 11472409 intergenic not near genes chr3R 11472450 intergenic not near genes chr3R 11472492 intergenic not near genes chr3R_6_11470001 chr3R_11470001 RAL-336 470 chr3R 11694724 11694742 chr3R 11694816 11694835 4 93 2.5 0.5 1.5 1.6 111 chr3R 11694724 intergenic Fer3 - chr3R 11694780 intergenic Fer3 - chr3R 11694835 intergenic not near genes chr3R_4_11690001 chr3R_11690001 RAL-336 471 chr3R 11710213 11710225 chr3R 11710290 11710302 5 77 4.0 5.5 4.8 0.9 89 chr3R 11710213 intergenic not near genes chr3R 11710258 intergenic not near genes chr3R 11710302 intergenic not near genes chr3R_5_11710001 chr3R_11710001 RAL-336 472 chr3R 11710227 11710237 chr3R 11710289 11710313 5 74 2.5 5.5 4.0 1.0 86 chr3R 11710227 intergenic not near genes chr3R 11710270 intergenic not near genes chr3R 11710313 intergenic not near genes chr3R_5_11710001 chr3R_11710001 RAL-336 473 chr3R 11734173 11734190 chr3R 11734292 11734309 4 119 1.5 3.5 2.5 1.1 136 chr3R 11734173 intergenic not near genes chr3R 11734241 intergenic not near genes chr3R 11734309 intergenic not near genes chr3R_4_11730001 chr3R_11730001 RAL-336 474 chr3R 11811096 11811121 chr3R 11811183 11811209 7 92 4.0 5.0 4.5 1.3 113 chr3R 11811096 5` UTR ClC-a - chr3R 11811152 intron ClC-a - chr3R 11811209 intron ClC-a - chr3R_7_11810001 chr3R_11810001 RAL-336 475 chr3R 12111902 12111923 chr3R 12111978 12111998 4 76 0.0 3.0 1.5 1.6 96 chr3R 12111902 intergenic dpr17 + chr3R 12111950 intergenic not near genes chr3R 12111998 intergenic not near genes chr3R_4_12110001 chr3R_12110001 RAL-336 476 chr3R 12183190 12183207 chr3R 12183276 12183292 4 85 2.0 0.5 1.2 1.8 102 chr3R 12183190 intergenic not near genes chr3R 12183241 intergenic not near genes chr3R 12183292 intergenic not near genes chr3R_4_12180001 chr3R_12180001 RAL-336 477 chr3R 13248654 13248681 chr3R 13248750 13248780 9 98 1.0 0.5 0.8 5.0 126 chr3R 13248654 intron Ace - chr3R 13248717 intron Ace - chr3R 13248780 intron Ace - chr3R_9_13245001 chr3R_13245001 RAL-336 478 chr3R 13252268 13252290 chr3R 13252342 13252343 6 71 1.5 2.5 2.0 2.0 75 chr3R 13252268 intron Ace - chr3R 13252306 intron Ace - chr3R 13252343 intron Ace - chr3R_6_13250001 chr3R_13250001 RAL-336 479 chr3R 13417800 13417818 chr3R 13418091 13418108 4 291 1.0 0.0 0.5 2.7 308 chr3R 13417800 intergenic not near genes chr3R 13417954 intergenic not near genes chr3R 13418108 intergenic not near genes chr3R_4_13415001 chr3R_13415001 RAL-336 480 chr3R 13672942 13672977 chr3R 13673020 13673055 6 77 1.0 2.0 1.5 2.4 113 chr3R 13672942 intron Task6 - chr3R 13672998 intron Task6 - chr3R 13673055 intron Task6 - chr3R_6_13670001 chr3R_13670001 RAL-336 481 chr3R 13693027 13693028 chr3R 21907534 21907536 35 8214507 11.5 8.5 10.0 3.2 8214509 chr3R 13693027 3` UTR flfl + chr3R 17800282 exon CG17803 - chr3R 21907536 intergenic CG6678 + chr3R_35_17800001 chr3R_17800001 RAL-336 482 chr3R 13863698 13863707 chr3R 13863778 13863795 6 86 1.5 4.0 2.8 1.6 97 chr3R 13863698 intergenic not near genes chr3R 13863746 intergenic not near genes chr3R 13863795 intergenic not near genes chr3R_6_13860001 chr3R_13860001 RAL-336 483 chr3R 14117440 14117469 chr3R 14117516 14117544 4 74 1.0 1.5 1.2 1.8 104 chr3R 14117440 intron Kif19A - chr3R 14117492 intron Kif19A - chr3R 14117544 intron Kif19A - chr3R_4_14115001 chr3R_14115001 RAL-336 484 chr3R 14123767 14123779 chr3R 14123835 14123862 4 78 2.5 0.5 1.5 1.6 95 chr3R 14123767 intron twf + chr3R 14123814 intron twf + chr3R 14123862 intron twf + chr3R_4_14120001 chr3R_14120001 RAL-336 485 chr3R 14246399 14246413 chr3R 14247887 14247892 jockey 4 1480 0.5 2.0 1.2 1.8 1493 chr3R 14246399 intergenic not near genes chr3R 14247146 intergenic not near genes chr3R 14247892 intergenic not near genes chr3R_4_14245001 chr3R_14245001 RAL-336 486 chr3R 14426055 14426082 chr3R 14426159 14426186 7 101 0.0 2.5 1.2 3.2 131 chr3R 14426055 intron cv-c - chr3R 14426120 intron cv-c - chr3R 14426186 intron cv-c - chr3R_7_14425001 chr3R_14425001 RAL-336 487 chr3R 14458897 14459079 chr3R 14458974 14459194 9 97 3.0 2.0 2.5 2.6 297 chr3R 14458897 intron cv-c - chr3R 14459046 intron cv-c - chr3R 14459194 intron cv-c - chr3R_9_14455001 chr3R_14455001 RAL-336 488 chr3R 14526338 14526363 chr3R 14526518 14526543 6 178 1.5 1.0 1.2 2.7 205 chr3R 14526338 intron Pde6 - chr3R 14526440 intron Pde6 - chr3R 14526543 intron Pde6 - chr3R_6_14525001 chr3R_14525001 RAL-336 489 chr3R 14549804 14549815 chr3R 14549880 14549891 5 76 4.0 1.5 2.8 1.3 87 chr3R 14549804 intron Pde6 - chr3R 14549848 intron Pde6 - chr3R 14549891 intron Pde6 - chr3R_5_14545001 chr3R_14545001 RAL-336 490 chr3R 14560665 14560685 chr3R 14560860 14560880 4 194 0.5 2.0 1.2 1.8 215 chr3R 14560665 intergenic CG14850 + chr3R 14560772 intergenic CG14850 + chr3R 14560880 intergenic CG14850 + chr3R_4_14560001 chr3R_14560001 RAL-336 491 chr3R 14704382 14704415 chr3R 14704459 14704492 4 77 0.5 0.5 0.5 2.7 110 chr3R 14704382 intron kibra - chr3R 14704437 intron kibra - chr3R 14704492 intron kibra - chr3R_4_14700001 chr3R_14700001 RAL-336 492 chr3R 14804778 14804790 chr3R 14804871 14804872 6 91 2.5 1.5 2.0 2.0 94 chr3R 14804778 3` UTR btsz - chr3R 14804825 3` UTR btsz - chr3R 14804872 3` UTR btsz - chr3R_6_14800001 chr3R_14800001 RAL-336 493 chr3R 14821619 14821647 chr3R 14821768 14821796 5 148 1.0 3.0 2.0 1.7 177 chr3R 14821619 intron btsz - chr3R 14821708 intron btsz - chr3R 14821796 intron btsz - chr3R_5_14820001 chr3R_14820001 RAL-336 494 chr3R 14898481 14898497 chr3R 14898601 14898617 8 120 2.0 1.5 1.8 2.9 136 chr3R 14898481 intergenic Nup93-2 -,CG3817 + chr3R 14898549 intergenic Nup93-2 -,CG3817 + chr3R 14898617 intergenic CG3817 +,Nup93-2 - chr3R_8_14895001 chr3R_14895001 RAL-336 495 chr3R 15416252 15416279 chr3R 15416332 15416359 6 80 2.5 6.0 4.2 1.2 107 chr3R 15416252 3` UTR Atx2 + chr3R 15416306 3` UTR Atx2 + chr3R 15416359 3` UTR Atx2 + chr3R_6_15415001 chr3R_15415001 RAL-336 496 chr3R 15594659 15594664 chr3R 15594742 15594747 4 83 0.5 1.0 0.8 2.2 88 chr3R 15594659 intergenic not near genes chr3R 15594703 intergenic not near genes chr3R 15594747 intergenic not near genes chr3R_4_15590001 chr3R_15590001 RAL-336 497 chr3R 15594665 15594676 chr3R 15594738 15594759 5 81 0.0 0.5 0.2 4.2 94 chr3R 15594665 intergenic not near genes chr3R 15594712 intergenic not near genes chr3R 15594759 intergenic not near genes chr3R_5_15590001 chr3R_15590001 RAL-336 498 chr3R 16194399 16194412 chr3R 16194662 16194674 6 263 2.5 1.5 2.0 2.0 275 chr3R 16194399 intron sra + chr3R 16194536 intron sra + chr3R 16194674 intron sra + chr3R_6_16190001 chr3R_16190001 RAL-336 499 chr3R 16225093 16225117 chr3R 16225178 16225202 7 85 1.5 3.5 2.5 2.0 109 chr3R 16225093 intergenic not near genes chr3R 16225148 intergenic not near genes chr3R 16225202 intergenic tara + chr3R_7_16225001 chr3R_16225001 RAL-336 500 chr3R 16246551 16246557 chr3R 16246626 16246628 4 74 0.0 0.5 0.2 3.3 77 chr3R 16246551 intron tara + chr3R 16246590 intron tara + chr3R 16246628 intron tara + chr3R_4_16245001 chr3R_16245001 RAL-336 501 chr3R 16253560 16253572 chr3R 16253641 16253657 4 84 0.0 1.0 0.5 2.7 97 chr3R 16253560 intron tara + chr3R 16253608 intron tara + chr3R 16253657 intron tara + chr3R_4_16250001 chr3R_16250001 RAL-336 502 chr3R 16368462 16368486 chr3R 16368538 16368541 6 73 2.5 3.5 3.0 1.5 79 chr3R 16368462 intergenic CG14880 -,CG10317 - chr3R 16368502 intergenic CG14880 -,CG10317 - chr3R 16368541 intergenic CG14880 -,CG10317 - chr3R_6_16365001 chr3R_16365001 RAL-336 503 chr3R 16996306 16996333 chr3R 16996381 16996409 8 74 1.0 2.0 1.5 3.2 103 chr3R 16996306 intergenic CG3534 +,CG17556 - chr3R 16996358 intergenic CG3534 +,CG17556 - chr3R 16996409 intergenic CG3534 +,CG17556 - chr3R_8_16995001 chr3R_16995001 RAL-336 504 chr3R 17226016 17226049 chr3R 17226113 17226148 6 96 2.0 0.0 1.0 3.0 132 chr3R 17226016 intergenic not near genes chr3R 17226082 intergenic not near genes chr3R 17226148 intergenic not near genes chr3R_6_17225001 chr3R_17225001 RAL-336 505 chr3R 17346695 17346718 chr3R 17348258 17348281 F-element 4 1562 0.5 1.0 0.8 2.2 1586 chr3R 17346695 intron beat-IIa - chr3R 17347488 intron beat-IIa - chr3R 17348281 intron beat-IIa - chr3R_4_17345001 chr3R_17345001 RAL-336 506 chr3R 17420935 17420969 chr3R 17425522 17425553 6 4588 3.0 8.5 5.8 0.9 4618 chr3R 17420935 exon CG42835 + chr3R 17423244 intergenic not near genes chr3R 17425553 intergenic CG5873 + chr3R_6_17420001 chr3R_17420001 RAL-336 507 chr3R 17729726 17729758 chr3R 17729803 17729834 8 73 3.0 3.0 3.0 2.0 108 chr3R 17729726 intron Lgr1 + chr3R 17729780 intron Lgr1 + chr3R 17729834 intron Lgr1 + chr3R_8_17725001 chr3R_17725001 RAL-336 508 chr3R 18537236 18537266 chr3R 18537320 18537350 8 84 0.0 2.5 1.2 3.6 114 chr3R 18537236 intron fru - chr3R 18537293 intron fru - chr3R 18537350 intron fru - chr3R_8_18535001 chr3R_18535001 RAL-336 509 chr3R 18670389 18670413 chr3R 18670482 18670506 4 93 0.0 0.0 0.0 4.0 117 chr3R 18670389 intron CG7702 + chr3R 18670448 intron CG7702 + chr3R 18670506 intron CG7702 + chr3R_4_18670001 chr3R_18670001 RAL-336 510 chr3R 18812075 18812100 chr3R 18812153 18812177 4 78 0.5 2.0 1.2 1.8 102 chr3R 18812075 intron CG18208 - chr3R 18812126 intron CG18208 - chr3R 18812177 intron CG18208 - chr3R_4_18810001 chr3R_18810001 RAL-336 511 chr3R 18888838 18888863 chr3R 18889170 18889198 6 333 0.5 1.0 0.8 3.3 360 chr3R 18888838 intergenic not near genes chr3R 18889018 intergenic not near genes chr3R 18889198 intergenic not near genes chr3R_6_18885001 chr3R_18885001 RAL-336 512 chr3R 18891266 18891289 chr3R 18891391 18891413 7 121 0.5 3.0 1.8 2.5 147 chr3R 18891266 intergenic not near genes chr3R 18891340 intergenic not near genes chr3R 18891413 intergenic not near genes chr3R_7_18890001 chr3R_18890001 RAL-336 513 chr3R 19014096 19014117 chr3R 19014174 19014197 5 73 4.5 6.5 5.5 0.8 101 chr3R 19014096 intron gukh + chr3R 19014146 intron gukh + chr3R 19014197 intron gukh + chr3R_5_19010001 chr3R_19010001 RAL-336 514 chr3R 19140265 19140301 chr3R 19140713 19140735 9 446 0.5 1.5 1.0 4.5 470 chr3R 19140265 3` UTR Ppcs - chr3R 19140500 3` UTR Ppcs - chr3R 19140735 3` UTR Ppcs - chr3R_9_19140001 chr3R_19140001 RAL-336 515 chr3R 19340408 19340418 chr3R 19340485 19340495 4 77 0.5 0.5 0.5 2.7 87 chr3R 19340408 intergenic not near genes chr3R 19340452 intergenic not near genes chr3R 19340495 intergenic not near genes chr3R_4_19340001 chr3R_19340001 RAL-336 516 chr3R 19570317 19570340 chr3R 19570392 19570413 4 71 0.0 1.0 0.5 2.7 96 chr3R 19570317 intron Dys + chr3R 19570365 intron Dys + chr3R 19570413 intron Dys + chr3R_4_19570001 chr3R_19570001 RAL-336 517 chr3R 19659388 19659418 chr3R 19659481 19659511 9 93 4.0 0.5 2.2 2.8 123 chr3R 19659388 intergenic ort + chr3R 19659450 intergenic ort + chr3R 19659511 intergenic ort + chr3R_9_19655001 chr3R_19655001 RAL-336 518 chr3R 19915872 19915899 chr3R 19916060 19916088 7 186 2.0 4.0 3.0 1.8 216 chr3R 19915872 3` UTR CG4465 - chr3R 19915980 3` UTR CG4465 - chr3R 19916088 exon CG4465 - chr3R_7_19915001 chr3R_19915001 RAL-336 519 chr3R 19995191 19995216 chr3R 19995342 19995367 4 151 2.0 1.5 1.8 1.4 176 chr3R 19995191 intron Hs6st - chr3R 19995279 intron Hs6st - chr3R 19995367 intron Hs6st - chr3R_4_19995001 chr3R_19995001 RAL-336 520 chr3R 20008822 20008849 chr3R 20008902 20008905 6 75 2.0 1.0 1.5 2.4 83 chr3R 20008822 intergenic MED25 +,Hs6st - chr3R 20008864 intergenic MED25 +,Hs6st - chr3R 20008905 intergenic MED25 +,Hs6st - chr3R_6_20005001 chr3R_20005001 RAL-336 521 chr3R 20109541 20109570 chr3R 20114745 20114776 copia 5 5205 1.5 1.5 1.5 2.0 5235 chr3R 20109541 intergenic not near genes chr3R 20112158 intergenic not near genes chr3R 20114776 intergenic CG10887 + chr3R_5_20110001 chr3R_20110001 RAL-336 522 chr3R 20266519 20266547 chr3R 20272990 20273018 Burdock 9 6470 2.0 2.0 2.0 3.0 6499 chr3R 20266519 intron cic + chr3R 20269768 intron cic + chr3R 20273018 intron cic + chr3R_9_20265001 chr3R_20265001 RAL-336 523 chr3R 20456099 20456132 chr3R 20456203 20456212 10 98 5.0 2.5 3.8 2.1 113 chr3R 20456099 intron Gfrl - chr3R 20456156 intron Gfrl - chr3R 20456212 intron Gfrl - chr3R_10_20455001 chr3R_20455001 RAL-336 524 chr3R 20467079 20467115 chr3R 20467155 20467159 4 62 1.0 1.5 1.2 1.8 80 chr3R 20467079 intron Gfrl - chr3R 20467119 intron Gfrl - chr3R 20467159 intron Gfrl - chr3R_4_20465001 chr3R_20465001 RAL-336 525 chr3R 20469289 20469458 chr3R 20469382 20469539 5 90 0.0 0.0 0.0 5.0 250 chr3R 20469289 intron Gfrl - chr3R 20469414 intron Gfrl - chr3R 20469539 intron Gfrl - chr3R_5_20465001 chr3R_20465001 RAL-336 526 chr3R 20506612 20506616 chr3R 20507398 20507418 BS 4 798 1.5 2.5 2.0 1.3 806 chr3R 20506612 intergenic Or92a + chr3R 20507015 intergenic CG4288 - chr3R 20507418 3` UTR CG4288 - chr3R_4_20505001 chr3R_20505001 RAL-336 527 chr3R 20513013 20513036 chr3R 20515713 20515739 opus 5 2702 1.0 1.0 1.0 2.5 2726 chr3R 20513013 intergenic not near genes chr3R 20514376 intergenic not near genes chr3R 20515739 intergenic not near genes chr3R_5_20510001 chr3R_20510001 RAL-336 528 chr3R 20592805 20592816 chr3R 20592899 20592911 6 94 0.0 3.0 1.5 2.4 106 chr3R 20592805 intergenic CG4159 -,bon + chr3R 20592858 intergenic CG4159 -,bon + chr3R 20592911 intergenic bon +,CG4159 - chr3R_6_20590001 chr3R_20590001 RAL-336 529 chr3R 20771710 20771721 chr3R 20771791 20771801 6 80 0.0 2.5 1.2 2.7 91 chr3R 20771710 intron,intron Syp +,Takl1 - chr3R 20771756 intron,intron Syp +,Takl1 - chr3R 20771801 intron,exon Syp +,Takl1 - chr3R_6_20770001 chr3R_20770001 RAL-336 530 chr3R 20829969 20829986 chr3R 20830052 20830062 4 80 4.5 5.0 4.8 0.7 93 chr3R 20829969 intron AdSS - chr3R 20830016 intron AdSS - chr3R 20830062 intron AdSS - chr3R_4_20830001 chr3R_20830001 RAL-336 531 chr3R 20942821 20942843 chr3R 20942888 20942918 4 73 0.0 1.5 0.8 2.2 97 chr3R 20942821 intron CG31191 - chr3R 20942870 intron CG31191 - chr3R 20942918 intron CG31191 - chr3R_4_20940001 chr3R_20940001 RAL-336 532 chr3R 21020401 21020431 chr3R 21020477 21020507 9 76 1.5 0.5 1.0 4.5 106 chr3R 21020401 3` UTR Rlip + chr3R 21020454 3` UTR Rlip + chr3R 21020507 3` UTR Rlip + chr3R_9_21020001 chr3R_21020001 RAL-336 533 chr3R 21383277 21383294 chr3R 21383357 21383366 4 77 0.0 1.0 0.5 2.7 89 chr3R 21383277 intergenic not near genes chr3R 21383322 intergenic not near genes chr3R 21383366 intergenic not near genes chr3R_4_21380001 chr3R_21380001 RAL-336 534 chr3R 21385715 21385948 chr3R 21385775 21386024 5 73 2.0 0.0 1.0 2.5 309 chr3R 21385715 intergenic not near genes chr3R 21385870 intergenic not near genes chr3R 21386024 intergenic not near genes chr3R_5_21385001 chr3R_21385001 RAL-336 535 chr3R 21506873 21506911 chr3R 21506959 21506991 5 84 0.0 1.0 0.5 3.3 118 chr3R 21506873 intron C15 + chr3R 21506932 intron C15 + chr3R 21506991 intron C15 + chr3R_5_21505001 chr3R_21505001 RAL-336 536 chr3R 21518268 21518272 chr3R 21518352 21518355 4 84 0.0 4.5 2.2 1.2 87 chr3R 21518268 intergenic not near genes chr3R 21518312 intergenic not near genes chr3R 21518355 intergenic not near genes chr3R_4_21515001 chr3R_21515001 RAL-336 537 chr3R 21519988 21520134 chr3R 21520089 21520228 4 98 0.5 0.5 0.5 2.7 240 chr3R 21519988 intergenic not near genes chr3R 21520108 intergenic not near genes chr3R 21520228 intergenic not near genes chr3R_4_21520001 chr3R_21520001 RAL-336 538 chr3R 21624105 21624121 chr3R 21624198 21624215 6 92 2.0 3.0 2.5 1.7 110 chr3R 21624105 intron E2f - chr3R 21624160 intron E2f - chr3R 21624215 intron E2f - chr3R_6_21620001 chr3R_21620001 RAL-336 539 chr3R 21758689 21758713 chr3R 21758769 21758784 6 71 1.5 5.5 3.5 1.3 95 chr3R 21758689 intergenic CG42335 + chr3R 21758736 intergenic CG42335 + chr3R 21758784 exon CG42335 + chr3R_6_21755001 chr3R_21755001 RAL-336 540 chr3R 21761138 21761151 chr3R 21768515 21768519 mdg1 4 7374 1.0 2.0 1.5 1.6 7381 chr3R 21761138 exon CG42335 + chr3R 21764828 intron CG42335 + chr3R 21768519 exon CG42335 + chr3R_4_21760001 chr3R_21760001 RAL-336 541 chr3R 21784860 21784884 chr3R 21784958 21784975 5 97 1.5 0.0 0.8 2.8 115 chr3R 21784860 3` UTR,3` UTR CASK -,CRG - chr3R 21784918 3` UTR,3` UTR CASK -,CRG - chr3R 21784975 3` UTR,3` UTR CASK -,CRG - chr3R_5_21780001 chr3R_21780001 RAL-336 542 chr3R 8339246 8339251 chr3R 21907534 21907534 8 13568287 9.0 8.5 8.8 0.8 13568288 chr3R 8339246 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907534 intergenic CG6678 + chr3R_8_15120001 chr3R_15120001 RAL-336 543 chr3R 17389054 17389054 chr3R 21907534 21907534 6 4518480 8.5 8.5 8.5 0.6 4518480 chr3R 17389054 intron,3` UTR Brf -,lute + chr3R 19648294 5` UTR CG6195 - chr3R 21907534 intergenic CG6678 + chr3R_6_19645001 chr3R_19645001 RAL-336 544 chr3R 21907534 21907534 chr3R 28831801 28831803 38 6924268 10.0 20.0 15.0 2.4 6924269 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831803 intron WASp - chr3R_38_25365001 chr3R_25365001 RAL-336 545 chr3R 9620956 9620956 chr3R 21907535 21907535 4 12286579 7.0 8.5 7.8 0.5 12286579 chr3R 9620956 intron CG8312 + chr3R 15764246 intergenic not near genes chr3R 21907535 intergenic CG6678 + chr3R_4_15760001 chr3R_15760001 RAL-336 546 chr3R 17389054 17389054 chr3R 21907535 21907535 5 4518481 8.5 8.5 8.5 0.5 4518481 chr3R 17389054 intron,3` UTR Brf -,lute + chr3R 19648294 5` UTR CG6195 - chr3R 21907535 intergenic CG6678 + chr3R_5_19645001 chr3R_19645001 RAL-336 547 chr3R 19457914 19457920 chr3R 21907535 21907535 10 2449619 2.5 8.5 5.5 1.5 2449621 chr3R 19457914 3` UTR CG31221 + chr3R 20682724 intergenic not near genes chr3R 21907535 intergenic CG6678 + chr3R_10_20680001 chr3R_20680001 RAL-336 548 chr3R 20177845 20177845 chr3R 21907535 21907535 4 1729690 0.5 8.5 4.5 0.7 1729690 chr3R 20177845 intergenic not near genes chr3R 21042690 intergenic Dhc93AB - chr3R 21907535 intergenic CG6678 + chr3R_4_21040001 chr3R_21040001 RAL-336 549 chr3R 21337429 21337430 chr3R 21907535 21907535 7 570106 5.0 8.5 6.8 0.9 570106 chr3R 21337429 intron CG16791 - chr3R 21622482 intron E2f - chr3R 21907535 intergenic CG6678 + chr3R_7_21620001 chr3R_21620001 RAL-336 550 chr3R 21907535 21907535 chr3R 28831801 28831802 56 6924266 9.0 20.0 14.5 3.6 6924267 chr3R 21907535 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_56_25365001 chr3R_25365001 RAL-336 551 chr3R 17389054 17389054 chr3R 21907536 21907536 5 4518482 8.5 8.5 8.5 0.5 4518482 chr3R 17389054 intron,3` UTR Brf -,lute + chr3R 19648295 5` UTR CG6195 - chr3R 21907536 intergenic CG6678 + chr3R_5_19645001 chr3R_19645001 RAL-336 552 chr3R 21907536 21907536 chr3R 28831801 28831805 39 6924266 9.0 20.0 14.5 2.5 6924269 chr3R 21907536 intergenic CG6678 + chr3R 25369670 intron Fur1 - chr3R 28831805 intron WASp - chr3R_39_25365001 chr3R_25365001 RAL-336 553 chr3R 22450548 22450577 chr3R 22453179 22453217 NOF 5 2638 1.0 3.5 2.2 1.6 2669 chr3R 22450548 intron CG34376 + chr3R 22451882 intron CG34376 + chr3R 22453217 intron CG34376 + chr3R_5_22450001 chr3R_22450001 RAL-336 554 chr3R 22927875 22927905 chr3R 22927967 22927980 8 91 0.5 2.5 1.5 3.2 105 chr3R 22927875 intron klg + chr3R 22927928 intron klg + chr3R 22927980 intron klg + chr3R_8_22925001 chr3R_22925001 RAL-336 555 chr3R 23073660 23073689 chr3R 23073742 23073777 6 83 1.5 1.5 1.5 2.4 117 chr3R 23073660 intron CG13830 - chr3R 23073718 intron CG13830 - chr3R 23073777 intron CG13830 - chr3R_6_23070001 chr3R_23070001 RAL-336 556 chr3R 23210641 23210671 chr3R 23210726 23210756 6 85 2.0 2.0 2.0 2.0 115 chr3R 23210641 intron cnc - chr3R 23210698 intron cnc - chr3R 23210756 intron cnc - chr3R_6_23210001 chr3R_23210001 RAL-336 557 chr3R 23291259 23291278 chr3R 23291345 23291364 4 84 4.5 4.5 4.5 0.7 105 chr3R 23291259 3` UTR pnt - chr3R 23291312 3` UTR pnt - chr3R 23291364 3` UTR pnt - chr3R_4_23290001 chr3R_23290001 RAL-336 558 chr3R 23335458 23335466 chr3R 23335521 23335544 4 74 1.0 3.5 2.2 1.2 86 chr3R 23335458 intron pnt - chr3R 23335501 intron pnt - chr3R 23335544 intron pnt - chr3R_4_23335001 chr3R_23335001 RAL-336 559 chr3R 23431071 23431095 chr3R 23431147 23431153 6 72 3.0 2.0 2.5 1.7 82 chr3R 23431071 intron CG4374 - chr3R 23431112 intron CG4374 - chr3R 23431153 intron CG4374 - chr3R_6_23430001 chr3R_23430001 RAL-336 560 chr3R 10451877 10451880 chr3R 23614719 23614722 12 13162844 10.5 4.0 7.2 1.5 13162845 chr3R 10451877 intergenic not near genes chr3R 17033300 3` UTR CG31268 + chr3R 23614722 intron CG31145 - chr3R_12_17030001 chr3R_17030001 RAL-336 561 chr3R 23629824 23629845 chr3R 23629897 23629920 4 74 1.0 1.5 1.2 1.8 96 chr3R 23629824 intron CG31145 - chr3R 23629872 intron CG31145 - chr3R 23629920 intron CG31145 - chr3R_4_23625001 chr3R_23625001 RAL-336 562 chr3R 23684716 23684729 chr3R 23685186 23685195 roo 4 469 1.0 5.0 3.0 1.0 479 chr3R 23684716 intron CG18754 + chr3R 23684956 intron CG18754 + chr3R 23685195 exon CG18754 + chr3R_4_23680001 chr3R_23680001 RAL-336 563 chr3R 23944917 23944929 chr3R 23944998 23945014 5 84 2.5 3.0 2.8 1.3 97 chr3R 23944917 intron CG12268 - chr3R 23944966 intron CG12268 - chr3R 23945014 intron CG12268 - chr3R_5_23940001 chr3R_23940001 RAL-336 564 chr3R 23949049 23949065 chr3R 23949125 23949142 5 76 2.0 1.0 1.5 2.0 93 chr3R 23949049 intergenic not near genes chr3R 23949096 intergenic not near genes chr3R 23949142 intergenic not near genes chr3R_5_23945001 chr3R_23945001 RAL-336 565 chr3R 24072088 24072103 chr3R 24072521 24072537 jockey 9 437 10.5 0.0 5.2 1.5 449 chr3R 24072088 intron 4EHP - chr3R 24072312 intron 4EHP - chr3R 24072537 intron 4EHP - chr3R_9_24070001 chr3R_24070001 RAL-336 566 chr3R 24304008 24304038 chr3R 24304086 24304118 4 80 0.0 0.0 0.0 4.0 110 chr3R 24304008 intron crb + chr3R 24304063 intron crb + chr3R 24304118 intron crb + chr3R_4_24300001 chr3R_24300001 RAL-336 567 chr3R 21907535 21907535 chr3R 24389465 24389465 4 2481930 9.0 11.5 10.2 0.4 2481930 chr3R 21907535 intergenic CG6678 + chr3R 23148500 intergenic not near genes chr3R 24389465 intron CG5768 - chr3R_4_23145001 chr3R_23145001 RAL-336 568 chr3R 24458110 24458136 chr3R 24458581 24458607 7 470 4.0 1.5 2.8 1.8 497 chr3R 24458110 intergenic not near genes chr3R 24458358 intergenic not near genes chr3R 24458607 intergenic not near genes chr3R_7_24455001 chr3R_24455001 RAL-336 569 chr3R 24493280 24493301 chr3R 24493509 24493530 BS 4 229 1.0 1.5 1.2 1.8 250 chr3R 24493280 intergenic not near genes chr3R 24493405 intergenic not near genes chr3R 24493530 intergenic not near genes chr3R_4_24490001 chr3R_24490001 RAL-336 570 chr3R 24527805 24527825 chr3R 24527896 24527916 4 91 1.0 2.5 1.8 1.4 111 chr3R 24527805 intergenic CG6607 +,CG13618 + chr3R 24527860 intergenic CG6607 +,CG13618 + chr3R 24527916 intergenic CG6607 +,CG13618 + chr3R_4_24525001 chr3R_24525001 RAL-336 571 chr3R 24670181 24670194 chr3R 24670265 24670278 4 84 1.0 3.5 2.2 1.2 97 chr3R 24670181 intron slo + chr3R 24670230 intron slo + chr3R 24670278 intron slo + chr3R_4_24670001 chr3R_24670001 RAL-336 572 chr3R 24785078 24785111 chr3R 24785154 24785185 8 75 2.5 2.0 2.2 2.5 107 chr3R 24785078 3` UTR CG5805 - chr3R 24785132 3` UTR CG5805 - chr3R 24785185 3` UTR CG5805 - chr3R_8_24785001 chr3R_24785001 RAL-336 573 chr3R 24795310 24795344 chr3R 24795512 24795543 12 199 1.5 5.5 3.5 2.7 233 chr3R 24795310 intron Ets96B + chr3R 24795426 intron Ets96B + chr3R 24795543 intron Ets96B + chr3R_12_24795001 chr3R_24795001 RAL-336 574 chr3R 24863464 24863468 chr3R 24863515 24863531 4 56 1.5 4.0 2.8 1.1 67 chr3R 24863464 exon CG7016 + chr3R 24863498 exon CG7016 + chr3R 24863531 exon CG7016 + chr3R_4_24860001 chr3R_24860001 RAL-336 575 chr3R 24927126 24927155 chr3R 24931916 24931946 Doc 6 4788 6.5 5.5 6.0 0.9 4820 chr3R 24927126 intergenic Trf4-2 + chr3R 24929536 intergenic not near genes chr3R 24931946 intergenic CG11771 + chr3R_6_24925001 chr3R_24925001 RAL-336 576 chr3R 25669070 25669090 chr3R 25669159 25669181 8 90 3.5 2.0 2.8 2.1 111 chr3R 25669070 intron Lgr3 + chr3R 25669126 intron Lgr3 + chr3R 25669181 intron Lgr3 + chr3R_8_25665001 chr3R_25665001 RAL-336 577 chr3R 25689135 25689163 chr3R 25689243 25689271 5 108 0.0 2.0 1.0 2.5 136 chr3R 25689135 intergenic not near genes chr3R 25689203 intergenic not near genes chr3R 25689271 intergenic not near genes chr3R_5_25685001 chr3R_25685001 RAL-336 578 chr3R 25738631 25738662 chr3R 25738718 25738750 6 87 2.5 1.0 1.8 2.1 119 chr3R 25738631 intron LpR2 - chr3R 25738690 intron LpR2 - chr3R 25738750 intron LpR2 - chr3R_6_25735001 chr3R_25735001 RAL-336 579 chr3R 25832707 25832721 chr3R 25841884 25841895 roo 4 9178 2.0 2.5 2.2 1.2 9188 chr3R 25832707 exon alpha4GT2 + chr3R 25837301 intron alpha4GT2 + chr3R 25841895 exon alpha4GT2 + chr3R_4_25835001 chr3R_25835001 RAL-336 580 chr3R 25843635 25843665 chr3R 25843765 25843794 4 128 0.5 2.0 1.2 1.8 159 chr3R 25843635 intergenic CR45653 + chr3R 25843714 intergenic CR45653 + chr3R 25843794 intergenic CR45653 + chr3R_4_25840001 chr3R_25840001 RAL-336 581 chr3R 25939476 25939494 chr3R 25940878 25940898 8 1404 2.5 3.0 2.8 2.1 1422 chr3R 25939476 intron CCAP-R - chr3R 25940187 intron CCAP-R - chr3R 25940898 intron CCAP-R - chr3R_8_25940001 chr3R_25940001 RAL-336 582 chr3R 26376329 26376356 chr3R 26385488 26385514 roo 6 9159 0.0 1.0 0.5 4.0 9185 chr3R 26376329 intergenic not near genes chr3R 26380922 intergenic not near genes chr3R 26385514 intergenic not near genes chr3R_6_26380001 chr3R_26380001 RAL-336 583 chr3R 26558328 26558357 chr3R 26565639 26565644 Stalker4 4 7302 1.5 1.5 1.5 1.6 7316 chr3R 26558328 intron scrib + chr3R 26561986 intron scrib + chr3R 26565644 intron scrib + chr3R_4_26560001 chr3R_26560001 RAL-336 584 chr3R 26642734 26642760 chr3R 26643124 26643154 jockey 7 393 3.0 2.5 2.8 1.8 420 chr3R 26642734 intergenic not near genes chr3R 26642944 intergenic not near genes chr3R 26643154 intergenic not near genes chr3R_7_26640001 chr3R_26640001 RAL-336 585 chr3R 21907534 21907536 chr3R 26659336 26659337 6 4751802 9.0 4.5 6.8 0.8 4751803 chr3R 21907534 intergenic CG6678 + chr3R 24283436 intergenic CR45662 - chr3R 26659337 intron beat-VII - chr3R_6_24280001 chr3R_24280001 RAL-336 586 chr3R 26845580 26845604 chr3R 26845651 26845684 5 77 3.5 2.5 3.0 1.2 104 chr3R 26845580 intron Lerp - chr3R 26845632 intron Lerp - chr3R 26845684 intron Lerp - chr3R_5_26845001 chr3R_26845001 RAL-336 587 chr3R 26908049 26908061 chr3R 26908130 26908151 4 91 2.0 1.5 1.8 1.4 102 chr3R 26908049 intron T48 + chr3R 26908100 intron T48 + chr3R 26908151 intron T48 + chr3R_4_26905001 chr3R_26905001 RAL-336 588 chr3R 27028722 27028753 chr3R 27028801 27028830 6 78 0.0 0.5 0.2 5.0 108 chr3R 27028722 intron RYa-R + chr3R 27028776 intron RYa-R + chr3R 27028830 intron RYa-R + chr3R_6_27025001 chr3R_27025001 RAL-336 589 chr3R 27038441 27038464 chr3R 27039505 27039527 5 1064 2.0 1.0 1.5 2.0 1086 chr3R 27038441 intron RYa-R + chr3R 27038984 intron RYa-R + chr3R 27039527 intron RYa-R + chr3R_5_27035001 chr3R_27035001 RAL-336 590 chr3R 27140513 27140548 chr3R 27148123 27148158 412 12 7610 1.5 0.0 0.8 6.7 7645 chr3R 27140513 intron CG6051 - chr3R 27144336 intron CG6051 - chr3R 27148158 intron CG6051 - chr3R_12_27140001 chr3R_27140001 RAL-336 591 chr3R 27152376 27152400 chr3R 27152462 27152486 5 85 3.0 1.0 2.0 1.7 110 chr3R 27152376 intron Men-b + chr3R 27152431 intron Men-b + chr3R 27152486 intron Men-b + chr3R_5_27150001 chr3R_27150001 RAL-336 592 chr3R 27218340 27218368 chr3R 27218418 27218449 9 79 1.5 0.5 1.0 4.5 109 chr3R 27218340 intergenic CR34006 - chr3R 27218394 intergenic CR34006 - chr3R 27218449 intergenic CR34006 - chr3R_9_27215001 chr3R_27215001 RAL-336 593 chr3R 27218725 27218738 chr3R 27218797 27218824 6 80 1.5 1.5 1.5 2.4 99 chr3R 27218725 intergenic not near genes chr3R 27218774 intergenic not near genes chr3R 27218824 intergenic not near genes chr3R_6_27215001 chr3R_27215001 RAL-336 594 chr3R 27275847 27275871 chr3R 27275931 27275954 6 84 4.5 6.0 5.2 1.0 107 chr3R 27275847 intron CG5938 + chr3R 27275900 intron CG5938 + chr3R 27275954 intron CG5938 + chr3R_6_27275001 chr3R_27275001 RAL-336 595 chr3R 27275874 27275876 chr3R 27275928 27275960 4 76 2.0 4.0 3.0 1.0 86 chr3R 27275874 intron CG5938 + chr3R 27275917 intron CG5938 + chr3R 27275960 intron CG5938 + chr3R_4_27275001 chr3R_27275001 RAL-336 596 chr3R 27335948 27335965 chr3R 27336029 27336029 5 77 3.0 0.0 1.5 2.0 81 chr3R 27335948 intergenic not near genes chr3R 27335988 intergenic not near genes chr3R 27336029 intergenic not near genes chr3R_5_27335001 chr3R_27335001 RAL-336 597 chr3R 27342796 27342822 chr3R 27351377 27351403 Tirant 7 8580 0.5 1.0 0.8 3.9 8607 chr3R 27342796 intron CG42534 + chr3R 27347100 intron CG42534 + chr3R 27351403 intron CG42534 + chr3R_7_27345001 chr3R_27345001 RAL-336 598 chr3R 27417039 27417068 chr3R 27417130 27417154 4 80 0.0 1.0 0.5 2.7 115 chr3R 27417039 intron side - chr3R 27417096 intron side - chr3R 27417154 intron side - chr3R_4_27415001 chr3R_27415001 RAL-336 599 chr3R 27688065 27688094 chr3R 27688149 27688181 8 86 3.0 2.0 2.5 2.3 116 chr3R 27688065 5` UTR,intron CG31055 -,CG12880 + chr3R 27688123 5` UTR,intron CG31055 -,CG12880 + chr3R 27688181 intron CG12880 + chr3R_8_27685001 chr3R_27685001 RAL-336 600 chr3R 27779277 27779289 chr3R 27779348 27779355 5 70 7.5 4.5 6.0 0.7 78 chr3R 27779277 exon CG34353 - chr3R 27779316 intron CG34353 - chr3R 27779355 intron CG34353 - chr3R_5_27775001 chr3R_27775001 RAL-336 601 chr3R 27981944 27981977 chr3R 27982047 27982080 7 102 1.0 2.0 1.5 2.8 136 chr3R 27981944 intron betaTub97EF - chr3R 27982012 intron betaTub97EF - chr3R 27982080 intron betaTub97EF - chr3R_7_27980001 chr3R_27980001 RAL-336 602 chr3R 28173671 28173684 chr3R 28181101 28181114 mdg1 4 7430 3.0 2.0 2.5 1.1 7443 chr3R 28173671 intron CG34354 + chr3R 28177392 intron CG34354 + chr3R 28181114 intron CG34354 + chr3R_4_28175001 chr3R_28175001 RAL-336 603 chr3R 28253345 28253358 chr3R 28255854 28255868 jockey 4 2510 2.5 3.0 2.8 1.1 2523 chr3R 28253345 intergenic not near genes chr3R 28254606 intergenic not near genes chr3R 28255868 intergenic not near genes chr3R_4_28250001 chr3R_28250001 RAL-336 604 chr3R 28331506 28331529 chr3R 28331585 28331608 4 79 0.0 1.0 0.5 2.7 102 chr3R 28331506 intron larp - chr3R 28331557 intron larp - chr3R 28331608 intron larp - chr3R_4_28330001 chr3R_28330001 RAL-336 605 chr3R 28352518 28352544 chr3R 28352855 28352883 4 338 0.5 0.0 0.2 3.3 365 chr3R 28352518 exon Or98b + chr3R 28352700 exon Or98b + chr3R 28352883 exon Or98b + chr3R_4_28350001 chr3R_28350001 RAL-336 606 chr3R 28421662 28421687 chr3R 28421749 28421750 4 80 1.5 0.5 1.0 2.0 88 chr3R 28421662 intron beat-VI + chr3R 28421706 intron beat-VI + chr3R 28421750 intron beat-VI + chr3R_4_28420001 chr3R_28420001 RAL-336 607 chr3R 28442171 28442188 chr3R 28442251 28442254 4 80 2.0 2.5 2.2 1.2 83 chr3R 28442171 intron beat-VI + chr3R 28442212 intron beat-VI + chr3R 28442254 intron beat-VI + chr3R_4_28440001 chr3R_28440001 RAL-336 608 chr3R 28445615 28445632 chr3R 28445704 28445712 6 86 2.5 2.5 2.5 1.7 97 chr3R 28445615 intron beat-VI + chr3R 28445664 intron beat-VI + chr3R 28445712 intron beat-VI + chr3R_6_28445001 chr3R_28445001 RAL-336 609 chr3R 28478490 28478523 chr3R 28478566 28478595 6 75 0.5 1.5 1.0 3.0 105 chr3R 28478490 intergenic not near genes chr3R 28478542 intergenic not near genes chr3R 28478595 intergenic not near genes chr3R_6_28475001 chr3R_28475001 RAL-336 610 chr3R 28478986 28479155 chr3R 28479082 28479231 7 93 0.5 0.5 0.5 4.7 245 chr3R 28478986 intergenic not near genes chr3R 28479108 intergenic not near genes chr3R 28479231 intergenic not near genes chr3R_7_28475001 chr3R_28475001 RAL-336 611 chr3R 28730457 28730493 chr3R 28730539 28730584 6 78 3.5 2.0 2.8 1.6 127 chr3R 28730457 intron htt + chr3R 28730520 intron htt + chr3R 28730584 intron htt + chr3R_6_28730001 chr3R_28730001 RAL-336 612 chr3R 28744525 28744541 chr3R 28744666 28744683 4 141 9.5 3.0 6.2 0.6 158 chr3R 28744525 5` UTR AstA-R2 - chr3R 28744604 5` UTR AstA-R2 - chr3R 28744683 5` UTR AstA-R2 - chr3R_4_28740001 chr3R_28740001 RAL-336 613 chr3R 28792871 28792896 chr3R 28797965 28797973 jockey 4 5088 0.5 1.0 0.8 2.2 5102 chr3R 28792871 intergenic not near genes chr3R 28795422 intergenic not near genes chr3R 28797973 intergenic not near genes chr3R_4_28795001 chr3R_28795001 RAL-336 614 chr3R 28802041 28802062 chr3R 28802121 28802142 4 80 0.5 0.5 0.5 2.7 101 chr3R 28802041 intergenic not near genes chr3R 28802092 intergenic not near genes chr3R 28802142 intergenic not near genes chr3R_4_28800001 chr3R_28800001 RAL-336 615 chr3R 21907534 21907536 chr3R 28831799 28831799 4 6924264 9.0 19.5 14.2 0.3 6924265 chr3R 21907534 intergenic CG6678 + chr3R 25369666 intron Fur1 - chr3R 28831799 intron WASp - chr3R_4_25365001 chr3R_25365001 RAL-336 616 chr3R 21907534 21907536 chr3R 28831801 28831802 78 6924266 9.0 20.0 14.5 5.0 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_78_25365001 chr3R_25365001 RAL-336 617 chr3R 21907534 21907536 chr3R 29013340 29013340 21 7105806 9.0 4.0 6.5 2.8 7105806 chr3R 21907534 intergenic CG6678 + chr3R 25460437 intron Fur1 - chr3R 29013340 intron wat - chr3R_21_25460001 chr3R_25460001 RAL-336 618 chr3R 29319822 29319848 chr3R 29320141 29320164 jockey 5 318 1.0 1.5 1.2 2.3 342 chr3R 29319822 intergenic Cnx99A - chr3R 29319993 intergenic Cnx99A - chr3R 29320164 intergenic not near genes chr3R_5_29315001 chr3R_29315001 RAL-336 619 chr3R 29332282 29332309 chr3R 29332359 29332382 8 76 2.5 1.0 1.8 2.9 100 chr3R 29332282 intergenic not near genes chr3R 29332332 intergenic not near genes chr3R 29332382 intergenic not near genes chr3R_8_29330001 chr3R_29330001 RAL-336 620 chr3R 29406614 29406643 chr3R 29407900 29407918 jockey 9 1280 4.5 2.5 3.5 2.0 1304 chr3R 29406614 intron Ptp99A + chr3R 29407266 intron Ptp99A + chr3R 29407918 intron Ptp99A + chr3R_9_29405001 chr3R_29405001 RAL-336 621 chr3R 29429779 29429804 chr3R 29429856 29429882 4 77 0.0 0.0 0.0 4.0 103 chr3R 29429779 intron Ptp99A + chr3R 29429830 intron Ptp99A + chr3R 29429882 intron Ptp99A + chr3R_4_29425001 chr3R_29425001 RAL-336 622 chr3R 29505892 29505926 chr3R 29505969 29506000 9 75 0.0 2.0 1.0 4.5 108 chr3R 29505892 intergenic not near genes chr3R 29505946 intergenic not near genes chr3R 29506000 intergenic not near genes chr3R_9_29505001 chr3R_29505001 RAL-336 623 chr3R 29526237 29526264 chr3R 29526319 29526351 4 86 2.5 1.5 2.0 1.3 114 chr3R 29526237 intergenic not near genes chr3R 29526294 intergenic not near genes chr3R 29526351 intergenic not near genes chr3R_4_29525001 chr3R_29525001 RAL-336 624 chr3R 29642525 29642534 chr3R 29642601 29642610 4 76 1.5 4.0 2.8 1.1 85 chr3R 29642525 intron Dop1R2 - chr3R 29642568 intron Dop1R2 - chr3R 29642610 intron Dop1R2 - chr3R_4_29640001 chr3R_29640001 RAL-336 625 chr3R 29738280 29738296 chr3R 29739744 29739763 hobo 5 1466 1.5 2.0 1.8 1.8 1483 chr3R 29738280 5` UTR CG1969 + chr3R 29739022 intron CG1969 + chr3R 29739763 5` UTR CG1969 + chr3R_5_29735001 chr3R_29735001 RAL-336 626 chr3R 29831824 29831842 chr3R 29831896 29831927 17 79 5.0 3.0 4.0 3.4 103 chr3R 29831824 exon Atg16 - chr3R 29831876 intron Atg16 - chr3R 29831927 exon Atg16 - chr3R_17_29830001 chr3R_29830001 RAL-336 627 chr3R 29882021 29882041 chr3R 29891178 29891197 roo 4 9157 3.0 2.0 2.5 1.1 9176 chr3R 29882021 intron CG31038 + chr3R 29886609 intron CG31038 + chr3R 29891197 intron CG31038 + chr3R_4_29885001 chr3R_29885001 RAL-336 628 chr3R 29923642 29923673 chr3R 29925247 29925278 7 1605 19.0 22.5 20.8 0.3 1636 chr3R 29923642 intergenic Jon99Cii -,Jon99Ciii + chr3R 29924460 exon Jon99Cii - chr3R 29925278 3` UTR Jon99Ci - chr3R_7_29920001 chr3R_29920001 RAL-336 629 chr3R 29950578 29950588 chr3R 29950654 29950662 5 74 4.5 2.5 3.5 1.1 84 chr3R 29950578 intergenic TkR99D - chr3R 29950620 intergenic TkR99D - chr3R 29950662 intergenic TkR99D - chr3R_5_29950001 chr3R_29950001 RAL-336 630 chr3R 29963481 29963510 chr3R 29963583 29963610 4 97 0.5 1.0 0.8 2.2 129 chr3R 29963481 intron TkR99D - chr3R 29963546 intron TkR99D - chr3R 29963610 intron TkR99D - chr3R_4_29960001 chr3R_29960001 RAL-336 631 chr3R 30013675 30013708 chr3R 30013758 30013791 6 82 1.0 3.5 2.2 1.9 116 chr3R 30013675 intron CG7920 - chr3R 30013733 intron CG7920 - chr3R 30013791 intron CG7920 - chr3R_6_30010001 chr3R_30010001 RAL-336 632 chr3R 30170761 30170788 chr3R 30170848 30170875 5 87 1.5 1.0 1.2 2.3 114 chr3R 30170761 intron CG31028 - chr3R 30170818 intron CG31028 - chr3R 30170875 intron CG31028 - chr3R_5_30170001 chr3R_30170001 RAL-336 633 chr3R 30183221 30183235 chr3R 30183326 30183343 5 108 0.5 1.5 1.0 2.5 122 chr3R 30183221 intergenic not near genes chr3R 30183282 intergenic not near genes chr3R 30183343 intergenic not near genes chr3R_5_30180001 chr3R_30180001 RAL-336 634 chr3R 30238765 30238776 chr3R 30239929 30239940 1360 4 1164 3.0 0.5 1.8 1.4 1175 chr3R 30238765 intergenic not near genes chr3R 30239352 intergenic not near genes chr3R 30239940 intergenic not near genes chr3R_4_30235001 chr3R_30235001 RAL-336 635 chr3R 30332031 30332048 chr3R 30332110 30332126 4 78 1.5 0.0 0.8 2.2 95 chr3R 30332031 intron hdc + chr3R 30332078 intron hdc + chr3R 30332126 intron hdc + chr3R_4_30330001 chr3R_30330001 RAL-336 636 chr3R 30341924 30341948 chr3R 30342032 30342056 4 107 0.5 0.0 0.2 3.3 132 chr3R 30341924 intron hdc + chr3R 30341990 intron hdc + chr3R 30342056 intron hdc + chr3R_4_30340001 chr3R_30340001 RAL-336 637 chr3R 30480477 30480510 chr3R 30482945 30482978 jockey 5 2468 2.5 4.0 3.2 1.2 2501 chr3R 30480477 intron PH4alphaEFB + chr3R 30481728 intron PH4alphaEFB + chr3R 30482978 intron PH4alphaEFB + chr3R_5_30480001 chr3R_30480001 RAL-336 638 chr3R 30532751 30532758 chr3R 30532812 30532832 7 67 9.0 3.5 6.2 1.0 81 chr3R 30532751 intron tmod + chr3R 30532792 intron tmod + chr3R 30532832 intron tmod + chr3R_7_30530001 chr3R_30530001 RAL-336 639 chr3R 30627618 30627631 chr3R 30627697 30627711 5 79 3.0 3.0 3.0 1.2 93 chr3R 30627618 exon CG2267 - chr3R 30627664 exon CG2267 - chr3R 30627711 exon CG2267 - chr3R_5_30625001 chr3R_30625001 RAL-336 640 chr3R 30679528 30679548 chr3R 30686996 30687017 blood 4 7468 3.0 3.5 3.2 1.0 7489 chr3R 30679528 intergenic not near genes chr3R 30683272 intergenic not near genes chr3R 30687017 intergenic not near genes chr3R_4_30680001 chr3R_30680001 RAL-336 641 chr3R 30818813 30818844 chr3R 30820377 30820407 1360 9 1564 3.5 4.0 3.8 1.9 1594 chr3R 30818813 intron cindr + chr3R 30819610 intron cindr + chr3R 30820407 intron cindr + chr3R_9_30815001 chr3R_30815001 RAL-336 642 chr3R 31047216 31047233 chr3R 31047510 31047527 5 293 3.5 2.5 3.0 1.2 311 chr3R 31047216 intergenic CanA1 + chr3R 31047372 intergenic not near genes chr3R 31047527 intergenic not near genes chr3R_5_31045001 chr3R_31045001 RAL-336 643 chr3R 31074230 31074259 chr3R 31081828 31081857 springer 4 7598 4.5 3.5 4.0 0.8 7627 chr3R 31074230 intron Sox100B + chr3R 31078044 intron Sox100B + chr3R 31081857 intron Sox100B + chr3R_4_31075001 chr3R_31075001 RAL-336 644 chr3R 31413092 31413102 chr3R 31418292 31418302 copia 4 5200 0.5 0.0 0.2 3.3 5210 chr3R 31413092 intron Gprk2 + chr3R 31415697 intron Gprk2 + chr3R 31418302 intron Gprk2 + chr3R_4_31415001 chr3R_31415001 RAL-336 645 chr3R 31435362 31435381 chr3R 31435514 31435533 5 152 6.0 3.0 4.5 0.9 171 chr3R 31435362 intron Gprk2 + chr3R 31435448 intron Gprk2 + chr3R 31435533 intron Gprk2 + chr3R_5_31435001 chr3R_31435001 RAL-336 646 chr3R 31691553 31691564 chr3R 31696317 31696322 Doc 5 4764 2.5 4.5 3.5 1.1 4769 chr3R 31691553 intergenic not near genes chr3R 31693938 intergenic not near genes chr3R 31696322 intergenic not near genes chr3R_5_31690001 chr3R_31690001 RAL-336 647 chr3R 31808611 31808643 chr3R 31808687 31808719 6 74 2.0 5.5 3.8 1.2 108 chr3R 31808611 intron CG11576 - chr3R 31808665 intron CG11576 - chr3R 31808719 intron CG11576 - chr3R_6_31805001 chr3R_31805001 RAL-336 648 chrX 680842 680871 chrX 680925 680951 4 82 2.0 0.5 1.2 1.8 109 chrX 680842 intergenic not near genes chrX 680896 intergenic not near genes chrX 680951 intergenic not near genes chrX_4_680001 chrX_680001 RAL-336 649 chrX 778138 778160 chrX 778227 778250 8 87 0.5 0.0 0.2 6.7 112 chrX 778138 intron fz3 + chrX 778194 intron fz3 + chrX 778250 intron fz3 + chrX_8_775001 chrX_775001 RAL-336 650 chrX 806783 806818 chrX 806879 806907 6 90 1.0 0.5 0.8 3.3 124 chrX 806783 intron Sec22 + chrX 806845 intron Sec22 + chrX 806907 intron Sec22 + chrX_6_805001 chrX_805001 RAL-336 651 chrX 827602 827634 chrX 835391 835411 roo 5 7788 0.0 0.0 0.0 5.0 7809 chrX 827602 intron CG43867 - chrX 831506 intron CG43867 - chrX 835411 intron CG43867 - chrX_5_830001 chrX_830001 RAL-336 652 chrX 1053117 1053120 chrX 16983076 16983076 7 15929957 14.0 4.5 9.2 0.7 15929959 chrX 1053117 intron CR44779 + chrX 9018096 intron,intron rdgA +,CR43836 - chrX 16983076 intron CG45002 - chrX_7_9015001 chrX_9015001 RAL-336 653 chrX 1200048 1200066 chrX 1200126 1200144 6 77 0.5 1.5 1.0 3.0 96 chrX 1200048 intron CG14625 + chrX 1200096 intron CG14625 + chrX 1200144 intron CG14625 + chrX_6_1200001 chrX_1200001 RAL-336 654 chrX 1357780 1357807 chrX 1367950 1367977 Doc 4 10170 2.0 2.5 2.2 1.2 10197 chrX 1357780 intergenic png - chrX 1362878 intergenic not near genes chrX 1367977 intergenic not near genes chrX_4_1360001 chrX_1360001 RAL-336 655 chrX 1596427 1596462 chrX 1597177 1597212 7 741 2.0 1.5 1.8 2.5 785 chrX 1596427 intron,intron Mur2B -,br + chrX 1596820 intron,intron Mur2B -,br + chrX 1597212 intron,intron Mur2B -,br + chrX_7_1595001 chrX_1595001 RAL-336 656 chrX 1627989 1628001 chrX 1635441 1635465 gtwin 5 7464 2.0 7.0 4.5 0.9 7476 chrX 1627989 intron,intron Mur2B -,br + chrX 1631727 intron,intron Mur2B -,br + chrX 1635465 intron,intron Mur2B -,br + chrX_5_1630001 chrX_1630001 RAL-336 657 chrX 1894206 1894236 chrX 1894296 1894326 7 88 3.0 1.5 2.2 2.2 120 chrX 1894206 intron arm - chrX 1894266 intron arm - chrX 1894326 intron arm - chrX_7_1890001 chrX_1890001 RAL-336 658 chrX 1930543 1930567 chrX 1938110 1938137 opus 4 7569 1.0 1.0 1.0 2.0 7594 chrX 1930543 intergenic CG11596 + chrX 1934340 intergenic not near genes chrX 1938137 3` UTR CG3857 - chrX_4_1930001 chrX_1930001 RAL-336 659 chrX 2096371 2096388 chrX 2096464 2096480 8 93 1.0 3.0 2.0 2.7 109 chrX 2096371 intron csw + chrX 2096426 intron csw + chrX 2096480 intron csw + chrX_8_2095001 chrX_2095001 RAL-336 660 chrX 2145849 2145871 chrX 2145923 2145945 4 71 3.5 4.0 3.8 0.8 96 chrX 2145849 intron Pgd + chrX 2145897 intron Pgd + chrX 2145945 intron Pgd + chrX_4_2145001 chrX_2145001 RAL-336 661 chrX 2189281 2189307 chrX 2189497 2189522 5 213 3.5 3.0 3.2 1.2 241 chrX 2189281 5` UTR Mct1 + chrX 2189402 5` UTR Mct1 + chrX 2189522 intron Mct1 + chrX_5_2185001 chrX_2185001 RAL-336 662 chrX 2552801 2552829 chrX 2552925 2552952 9 119 4.0 7.0 5.5 1.4 151 chrX 2552801 intron Pdfr + chrX 2552876 intron Pdfr + chrX 2552952 intron Pdfr + chrX_9_2550001 chrX_2550001 RAL-336 663 chrX 2610386 2610390 chrX 2617503 2617507 HMS-Beagle 4 7117 5.0 1.5 3.2 1.0 7121 chrX 2610386 intergenic CG8636 - chrX 2613946 intergenic not near genes chrX 2617507 intergenic Tsp3A - chrX_4_2610001 chrX_2610001 RAL-336 664 chrX 2892635 2892656 chrX 2892726 2892747 6 91 18.5 16.5 17.5 0.3 112 chrX 2892635 intron,intron kirre +,CG3526 + chrX 2892691 intron,intron kirre +,CG3526 + chrX 2892747 intron,intron kirre +,CG3526 + chrX_6_2890001 chrX_2890001 RAL-336 665 chrX 3866106 3866128 chrX 3866184 3866206 4 78 2.0 1.0 1.5 1.6 100 chrX 3866106 intron yin - chrX 3866156 intron yin - chrX 3866206 intron yin - chrX_4_3865001 chrX_3865001 RAL-336 666 chrX 4751686 4751709 chrX 4751766 4751782 5 76 0.0 3.0 1.5 2.0 96 chrX 4751686 intergenic not near genes chrX 4751734 intergenic not near genes chrX 4751782 intergenic not near genes chrX_5_4750001 chrX_4750001 RAL-336 667 chrX 4792386 4792404 chrX 4792811 4792835 jockey 5 430 1.5 0.5 1.0 2.5 449 chrX 4792386 intergenic not near genes chrX 4792610 intergenic not near genes chrX 4792835 intergenic not near genes chrX_5_4790001 chrX_4790001 RAL-336 668 chrX 1562991 1562991 chrX 4805477 4805477 opus 4 3242486 17.5 7.0 12.2 0.3 3242486 chrX 1562991 intron Mur2B - chrX 3184234 intron dnc + chrX 4805477 3` UTR CR45516 - chrX_4_3180001 chrX_3180001 RAL-336 669 chrX 4827980 4828002 chrX 4835351 4835372 Stalker4 5 7368 1.0 0.5 0.8 2.8 7392 chrX 4827980 intergenic not near genes chrX 4831676 intergenic not near genes chrX 4835372 intergenic not near genes chrX_5_4830001 chrX_4830001 RAL-336 670 chrX 5096289 5096306 chrX 5103854 5103871 springer 4 7565 2.5 2.0 2.2 1.2 7582 chrX 5096289 intron,intron CG15465 +,rg + chrX 5100080 intron,intron CG15465 +,rg + chrX 5103871 intron,intron CG15465 +,rg + chrX_4_5100001 chrX_5100001 RAL-336 671 chrX 5134805 5134821 chrX 5134897 5134922 4 99 2.5 0.0 1.2 1.8 117 chrX 5134805 intron,intron CG15465 +,rg + chrX 5134864 intron,intron CG15465 +,rg + chrX 5134922 intron,intron CG15465 +,rg + chrX_4_5130001 chrX_5130001 RAL-336 672 chrX 5298090 5298121 chrX 5298267 5298298 4 177 0.5 0.0 0.2 3.3 208 chrX 5298090 intron CG42749 + chrX 5298194 intron CG42749 + chrX 5298298 intron CG42749 + chrX_4_5295001 chrX_5295001 RAL-336 673 chrX 5345406 5345426 chrX 5345517 5345537 5 111 0.5 1.0 0.8 2.8 131 chrX 5345406 intron SK + chrX 5345472 intron SK + chrX 5345537 intron SK + chrX_5_5345001 chrX_5345001 RAL-336 674 chrX 6171582 6171609 chrX 6179015 6179042 Quasimodo 9 7433 2.5 2.0 2.2 2.8 7460 chrX 6171582 intron Ca-alpha1T - chrX 6175312 intron Ca-alpha1T - chrX 6179042 intron Ca-alpha1T - chrX_9_6175001 chrX_6175001 RAL-336 675 chrX 6312196 6312226 chrX 6312279 6312309 7 80 1.0 4.0 2.5 2.0 113 chrX 6312196 intron CG15894 + chrX 6312252 intron CG15894 + chrX 6312309 intron CG15894 + chrX_7_6310001 chrX_6310001 RAL-336 676 chrX 6319098 6319121 chrX 6319181 6319204 4 83 1.0 2.0 1.5 1.6 106 chrX 6319098 intron CG15894 + chrX 6319151 intron CG15894 + chrX 6319204 intron CG15894 + chrX_4_6315001 chrX_6315001 RAL-336 677 chrX 6562818 6562848 chrX 6571300 6571330 Tirant 7 8482 1.5 3.0 2.2 2.2 8512 chrX 6562818 intron CG34417 + chrX 6567074 intron CG34417 + chrX 6571330 intron CG34417 + chrX_7_6565001 chrX_6565001 RAL-336 678 chrX 6737526 6737543 chrX 6737607 6737625 8 81 2.0 1.5 1.8 2.9 99 chrX 6737526 intron CG3168 - chrX 6737576 intron CG3168 - chrX 6737625 intron CG3168 - chrX_8_6735001 chrX_6735001 RAL-336 679 chrX 6846187 6846206 chrX 6846300 6846303 6 107 4.0 5.0 4.5 1.1 116 chrX 6846187 exon CG4557 + chrX 6846245 exon CG4557 + chrX 6846303 exon CG4557 + chrX_6_6845001 chrX_6845001 RAL-336 680 chrX 8079925 8079939 chrX 8080035 8080049 4 110 3.0 5.5 4.2 0.8 124 chrX 8079925 intron CG2254 - chrX 8079987 intron CG2254 - chrX 8080049 intron CG2254 - chrX_4_8075001 chrX_8075001 RAL-336 681 chrX 8085573 8085603 chrX 8085659 8085674 7 83 1.0 3.0 2.0 2.3 101 chrX 8085573 intron,5` UTR CG2256 -,CR45535 + chrX 8085624 intron,5` UTR CG2256 -,CR45535 + chrX 8085674 intron,5` UTR CG2256 -,CR45535 + chrX_7_8085001 chrX_8085001 RAL-336 682 chrX 8092286 8092315 chrX 8092371 8092390 4 82 1.0 1.0 1.0 2.0 104 chrX 8092286 intron Ubc-E2H - chrX 8092338 intron Ubc-E2H - chrX 8092390 intron Ubc-E2H - chrX_4_8090001 chrX_8090001 RAL-336 683 chrX 8364860 8364879 chrX 8365240 8365276 BS 5 391 1.5 1.0 1.2 2.3 416 chrX 8364860 intron nAChRalpha3 - chrX 8365068 intron nAChRalpha3 - chrX 8365276 intron nAChRalpha3 - chrX_5_8365001 chrX_8365001 RAL-336 684 chrX 8922337 8922346 chrX 8922767 8922779 jockey 5 433 2.0 3.0 2.5 1.4 442 chrX 8922337 intron rdgA + chrX 8922558 intron rdgA + chrX 8922779 intron rdgA + chrX_5_8920001 chrX_8920001 RAL-336 685 chrX 9047067 9047085 chrX 9047215 9047233 4 147 1.5 1.5 1.5 1.6 166 chrX 9047067 intron,intron CR43836 -,CG42388 + chrX 9047150 intron,intron CR43836 -,CG42388 + chrX 9047233 intron,intron CR43836 -,CG42388 + chrX_4_9045001 chrX_9045001 RAL-336 686 chrX 9218078 9218087 chrX 9218169 9218177 4 91 5.0 1.0 3.0 1.0 99 chrX 9218078 3` UTR t - chrX 9218128 3` UTR t - chrX 9218177 3` UTR t - chrX_4_9215001 chrX_9215001 RAL-336 687 chrX 9273019 9273044 chrX 9273100 9273125 5 81 2.0 2.0 2.0 1.7 106 chrX 9273019 intergenic Cfp1 -,CG16892 + chrX 9273072 intergenic Cfp1 -,CG16892 + chrX 9273125 intergenic Cfp1 -,CG16892 + chrX_5_9270001 chrX_9270001 RAL-336 688 chrX 9403418 9403437 chrX 9403547 9403560 4 128 0.0 1.5 0.8 2.2 142 chrX 9403418 intron mgl - chrX 9403489 intron mgl - chrX 9403560 intron mgl - chrX_4_9400001 chrX_9400001 RAL-336 689 chrX 10138221 10138232 chrX 10145724 10145736 412 5 7504 2.0 1.0 1.5 2.0 7515 chrX 10138221 intron,intron RhoU +,CR44894 - chrX 10141978 intron,intron RhoU +,CR44894 - chrX 10145736 intron,intron RhoU +,CR44894 - chrX_5_10140001 chrX_10140001 RAL-336 690 chrX 10154290 10154312 chrX 10154366 10154388 7 75 1.5 1.0 1.2 3.2 98 chrX 10154290 intron,intron CR44894 -,CG12645 + chrX 10154339 intron,intron CR44894 -,CG12645 + chrX 10154388 intron,exon CR44894 -,CG12645 + chrX_7_10150001 chrX_10150001 RAL-336 691 chrX 10550855 10550875 chrX 10552321 10552342 hobo 6 1463 2.5 0.5 1.5 2.4 1487 chrX 10550855 intron spri - chrX 10551598 intron spri - chrX 10552342 intron spri - chrX_6_10550001 chrX_10550001 RAL-336 692 chrX 11095999 11096028 chrX 11103101 11103130 HMS-Beagle 4 7102 0.5 3.5 2.0 1.3 7131 chrX 11095999 intergenic not near genes chrX 11099564 intergenic not near genes chrX 11103130 intron CG42249 + chrX_4_11095001 chrX_11095001 RAL-336 693 chrX 11254173 11254180 chrX 11254283 11254291 4 111 0.5 0.5 0.5 2.7 118 chrX 11254173 intron CG44422 - chrX 11254232 intron CG44422 - chrX 11254291 intron CG44422 - chrX_4_11250001 chrX_11250001 RAL-336 694 chrX 11839035 11839067 chrX 11839282 11839313 6 248 0.0 1.5 0.8 3.3 278 chrX 11839035 intergenic not near genes chrX 11839174 intergenic Cyp28c1 + chrX 11839313 intergenic Cyp28c1 + chrX_6_11835001 chrX_11835001 RAL-336 695 chrX 12272861 12272878 chrX 12272953 12272969 5 92 0.5 2.0 1.2 2.3 108 chrX 12272861 intron Ten-a + chrX 12272915 intron Ten-a + chrX 12272969 intron Ten-a + chrX_5_12270001 chrX_12270001 RAL-336 696 chrX 12499938 12499965 chrX 12500072 12500097 4 130 3.5 0.5 2.0 1.3 159 chrX 12499938 intron CG2556 + chrX 12500018 intron CG2556 + chrX 12500097 intron CG2556 + chrX_4_12500001 chrX_12500001 RAL-336 697 chrX 13236887 13236898 chrX 13236966 13236977 4 82 0.0 1.0 0.5 2.7 90 chrX 13236887 intron mew - chrX 13236932 intron mew - chrX 13236977 intron mew - chrX_4_13235001 chrX_13235001 RAL-336 698 chrX 13269222 13269235 chrX 13269297 13269305 4 74 0.0 0.5 0.2 3.3 83 chrX 13269222 intron HDAC4 - chrX 13269264 intron HDAC4 - chrX 13269305 intron HDAC4 - chrX_4_13265001 chrX_13265001 RAL-336 699 chrX 13374844 13374868 chrX 13374924 13374948 5 80 0.5 0.5 0.5 3.3 104 chrX 13374844 intron CG1640 + chrX 13374896 intron CG1640 + chrX 13374948 intron CG1640 + chrX_5_13370001 chrX_13370001 RAL-336 700 chrX 13514068 13514090 chrX 13514281 13514303 6 212 0.5 2.5 1.5 2.4 235 chrX 13514068 intron Neto + chrX 13514186 intron Neto + chrX 13514303 intron Neto + chrX_6_13510001 chrX_13510001 RAL-336 701 chrX 13943271 13943299 chrX 13943362 13943390 5 91 0.0 0.5 0.2 4.2 119 chrX 13943271 intron mamo - chrX 13943330 intron mamo - chrX 13943390 intron mamo - chrX_5_13940001 chrX_13940001 RAL-336 702 chrX 14105027 14105051 chrX 14114177 14114201 roo 5 9146 4.5 3.0 3.8 1.0 9174 chrX 14105027 intergenic not near genes chrX 14109614 intergenic not near genes chrX 14114201 5` UTR CR44657 + chrX_5_14105001 chrX_14105001 RAL-336 703 chrX 14189878 14189892 chrX 14189970 14189980 4 92 5.5 3.0 4.2 0.8 102 chrX 14189878 exon CG11585 + chrX 14189929 exon CG11585 + chrX 14189980 exon CG11585 + chrX_4_14185001 chrX_14185001 RAL-336 704 chrX 14560274 14560302 chrX 14560358 14560386 6 81 2.0 1.0 1.5 2.4 112 chrX 14560274 intergenic not near genes chrX 14560330 intergenic not near genes chrX 14560386 intergenic not near genes chrX_6_14560001 chrX_14560001 RAL-336 705 chrX 14778037 14778040 chrX 14782822 14782837 Doc 5 4795 3.5 2.0 2.8 1.3 4800 chrX 14778037 intergenic CG5347 + chrX 14780437 intergenic not near genes chrX 14782837 intergenic Ag5r2 - chrX_5_14780001 chrX_14780001 RAL-336 706 chrX 14818776 14818796 chrX 14823980 14823999 copia 4 5202 1.0 0.0 0.5 2.7 5223 chrX 14818776 intron rut - chrX 14821388 intron rut - chrX 14823999 intron rut - chrX_4_14820001 chrX_14820001 RAL-336 707 chrX 14936857 14936879 chrX 14946114 14946136 roo 5 9256 2.0 0.5 1.2 2.3 9279 chrX 14936857 intron pdgy - chrX 14941496 intron pdgy - chrX 14946136 intron pdgy - chrX_5_14940001 chrX_14940001 RAL-336 708 chrX 15589432 15589464 chrX 15589611 15589643 6 179 1.5 5.0 3.2 1.4 211 chrX 15589432 intron CG9220 - chrX 15589538 intron CG9220 - chrX 15589643 exon CG9220 - chrX_6_15585001 chrX_15585001 RAL-336 709 chrX 15681397 15681427 chrX 15681479 15681509 4 78 1.5 0.5 1.0 2.0 112 chrX 15681397 intergenic not near genes chrX 15681453 intergenic not near genes chrX 15681509 intergenic not near genes chrX_4_15680001 chrX_15680001 RAL-336 710 chrX 16668773 16668794 chrX 16668850 16668871 7 75 2.0 2.0 2.0 2.3 98 chrX 16668773 intergenic CG13012 -,r + chrX 16668822 3` UTR CG13012 - chrX 16668871 3` UTR CG13012 - chrX_7_16665001 chrX_16665001 RAL-336 711 chrX 17275529 17275564 chrX 17275607 17275631 8 67 3.0 2.5 2.8 2.1 102 chrX 17275529 intron f + chrX 17275580 intron f + chrX 17275631 intron f + chrX_8_17275001 chrX_17275001 RAL-336 712 chrX 17427046 17427073 chrX 17427133 17427159 10 82 2.0 2.0 2.0 3.3 113 chrX 17427046 intron,intron CG12994 -,CG5613 + chrX 17427102 intron,intron CG12994 -,CG5613 + chrX 17427159 intron,intron CG12994 -,CG5613 + chrX_10_17425001 chrX_17425001 RAL-336 713 chrX 17680896 17680918 chrX 17680968 17680978 4 72 1.5 3.0 2.2 1.2 82 chrX 17680896 intron chas - chrX 17680937 intron chas - chrX 17680978 intron chas - chrX_4_17680001 chrX_17680001 RAL-336 714 chrX 17782221 17782236 chrX 17782319 17782334 5 98 0.0 2.5 1.2 2.3 113 chrX 17782221 intergenic not near genes chrX 17782278 intergenic not near genes chrX 17782334 intergenic not near genes chrX_5_17780001 chrX_17780001 RAL-336 715 chrX 17782583 17782589 chrX 17782657 17782678 4 82 1.0 1.5 1.2 1.8 95 chrX 17782583 intergenic not near genes chrX 17782630 intergenic not near genes chrX 17782678 intergenic not near genes chrX_4_17780001 chrX_17780001 RAL-336 716 chrX 17816491 17816510 chrX 17816574 17816593 7 83 2.5 1.5 2.0 2.3 102 chrX 17816491 intergenic not near genes chrX 17816542 intergenic not near genes chrX 17816593 intergenic not near genes chrX_7_17815001 chrX_17815001 RAL-336 717 chrX 17978063 17978081 chrX 17978144 17978166 4 80 1.5 1.5 1.5 1.6 103 chrX 17978063 intron Sh - chrX 17978114 intron Sh - chrX 17978166 intron Sh - chrX_4_17975001 chrX_17975001 RAL-336 718 chrX 18122823 18122847 chrX 18122899 18122923 11 73 4.0 1.5 2.8 2.9 100 chrX 18122823 5` UTR CR45606 + chrX 18122873 5` UTR CR45606 + chrX 18122923 intergenic CR45606 + chrX_11_18120001 chrX_18120001 RAL-336 719 chrX 18558788 18558803 chrX 18558869 18558885 5 82 0.0 1.0 0.5 3.3 97 chrX 18558788 intron Bx + chrX 18558836 intron Bx + chrX 18558885 intron Bx + chrX_5_18555001 chrX_18555001 RAL-336 720 chrX 18645016 18645046 chrX 18645114 18645144 5 98 1.5 3.5 2.5 1.4 128 chrX 18645016 intron Rip11 - chrX 18645080 intron Rip11 - chrX 18645144 intron Rip11 - chrX_5_18645001 chrX_18645001 RAL-336 721 chrX 18854310 18854338 chrX 18854388 18854390 4 68 1.5 6.0 3.8 0.8 80 chrX 18854310 exon CG34422 + chrX 18854350 exon CG34422 + chrX 18854390 exon CG34422 + chrX_4_18850001 chrX_18850001 RAL-336 722 chrX 19060407 19060424 chrX 19065191 19065200 Doc 4 4782 3.0 2.5 2.8 1.1 4793 chrX 19060407 intron CG14190 + chrX 19062804 intron CG14190 + chrX 19065200 intron CG14190 + chrX_4_19060001 chrX_19060001 RAL-336 723 chrX 19136553 19136584 chrX 19143473 19143503 412 4 6919 1.5 3.5 2.5 1.1 6950 chrX 19136553 intergenic not near genes chrX 19140028 intergenic not near genes chrX 19143503 3` UTR RhoGAP18B - chrX_4_19140001 chrX_19140001 RAL-336 724 chrX 13057297 13057301 chrX 19242812 19242815 11 6185514 4.0 4.0 4.0 2.2 6185518 chrX 13057297 intron rad + chrX 16150056 intergenic not near genes chrX 19242815 intergenic not near genes chrX_11_16150001 chrX_16150001 RAL-336 725 chrX 19281006 19281030 chrX 19281135 19281159 4 129 0.0 1.0 0.5 2.7 153 chrX 19281006 intergenic CG8034 - chrX 19281082 intergenic CG8034 - chrX 19281159 intergenic CG8034 - chrX_4_19280001 chrX_19280001 RAL-336 726 chrX 19500563 19500588 chrX 19500640 19500665 4 77 0.5 2.5 1.5 1.6 102 chrX 19500563 intron,intron CG14200 +,Pfrx + chrX 19500614 intron,intron CG14200 +,Pfrx + chrX 19500665 intron,intron CG14200 +,Pfrx + chrX_4_19500001 chrX_19500001 RAL-336 727 chrX 19500726 19500746 chrX 19500813 19500833 4 87 0.0 2.0 1.0 2.0 107 chrX 19500726 intron,intron CG14200 +,Pfrx + chrX 19500780 intron,intron CG14200 +,Pfrx + chrX 19500833 intron,intron CG14200 +,Pfrx + chrX_4_19500001 chrX_19500001 RAL-336 728 chrX 19576576 19576587 chrX 19576654 19576665 7 77 2.5 4.5 3.5 1.6 89 chrX 19576576 intron Tao - chrX 19576620 intron Tao - chrX 19576665 intron Tao - chrX_7_19575001 chrX_19575001 RAL-336 729 chrX 19662030 19662046 chrX 19662253 19662266 6 221 2.5 3.0 2.8 1.6 236 chrX 19662030 intron CG14223 - chrX 19662148 intron CG14223 - chrX 19662266 intron CG14223 - chrX_6_19660001 chrX_19660001 RAL-336 730 chrX 19689411 19689434 chrX 19689489 19689512 6 78 1.0 1.5 1.2 2.7 101 chrX 19689411 intergenic Mer -,CG14227 - chrX 19689462 intergenic Mer - chrX 19689512 intergenic Mer - chrX_6_19685001 chrX_19685001 RAL-336 731 chrX 19769514 19769532 chrX 19769591 19769609 6 77 1.0 3.5 2.2 1.9 95 chrX 19769514 intron vfl - chrX 19769562 intron vfl - chrX 19769609 intron vfl - chrX_6_19765001 chrX_19765001 RAL-336 732 chrX 19897393 19897416 chrX 19897463 19897493 6 76 0.5 0.5 0.5 4.0 100 chrX 19897393 intron Hers + chrX 19897443 intron Hers + chrX 19897493 intron Hers + chrX_6_19895001 chrX_19895001 RAL-336 733 chrX 19983866 19983898 chrX 19983946 19983978 4 80 1.5 0.5 1.0 2.0 112 chrX 19983866 intergenic not near genes chrX 19983922 intergenic not near genes chrX 19983978 intergenic not near genes chrX_4_19980001 chrX_19980001 RAL-336 734 chrX 20041538 20041567 chrX 20041618 20041647 6 80 0.0 3.0 1.5 2.4 109 chrX 20041538 intron Dop2R - chrX 20041592 intron Dop2R - chrX 20041647 intron Dop2R - chrX_6_20040001 chrX_20040001 RAL-336 735 chrX 20259360 20259378 chrX 20446496 20446506 4 187134 5.0 0.0 2.5 1.1 187146 chrX 20259360 exon CG42577 + chrX 20352933 intergenic not near genes chrX 20446506 exon CG42578 + chrX_4_20350001 chrX_20350001 RAL-336 736 chrX 20312887 20312909 chrX 20312965 20312987 5 78 2.0 0.5 1.2 2.3 100 chrX 20312887 intron CG1504 - chrX 20312937 intron CG1504 - chrX 20312987 intron CG1504 - chrX_5_20310001 chrX_20310001 RAL-336 737 chrX 20369325 20369340 chrX 20369408 20369424 6 83 0.5 3.0 1.8 2.1 99 chrX 20369325 intergenic not near genes chrX 20369374 intergenic not near genes chrX 20369424 intergenic not near genes chrX_6_20365001 chrX_20365001 RAL-336 738 chrX 20377337 20377348 chrX 20378802 20378815 hobo 5 1465 1.0 3.5 2.2 1.6 1478 chrX 20377337 intergenic not near genes chrX 20378076 intergenic not near genes chrX 20378815 intergenic not near genes chrX_5_20375001 chrX_20375001 RAL-336 739 chrX 20437372 20437386 chrX 20437942 20437961 6 571 3.5 4.0 3.8 1.2 589 chrX 20437372 intron CG1695 + chrX 20437666 intron CG1695 + chrX 20437961 intron CG1695 + chrX_6_20435001 chrX_20435001 RAL-336 740 chrX 20443177 20443184 chrX 20443247 20443255 4 73 2.0 0.0 1.0 2.0 78 chrX 20443177 exon CG1695 + chrX 20443216 intron CG1695 + chrX 20443255 intron CG1695 + chrX_4_20440001 chrX_20440001 RAL-336 741 chrX 20575159 20575186 chrX 20575237 20575263 8 77 0.0 1.5 0.8 4.4 104 chrX 20575159 intergenic CG42580 + chrX 20575211 intergenic not near genes chrX 20575263 intergenic not near genes chrX_8_20575001 chrX_20575001 RAL-336 742 chrX 20635437 20635447 chrX 20635603 20635613 4 165 1.0 2.0 1.5 1.6 176 chrX 20635437 intergenic not near genes chrX 20635525 intergenic not near genes chrX 20635613 intergenic not near genes chrX_4_20635001 chrX_20635001 RAL-336 743 chrX 20940720 20940756 chrX 20942187 20942224 hobo 6 1466 2.0 1.0 1.5 2.4 1504 chrX 20940720 intergenic not near genes chrX 20941472 intergenic not near genes chrX 20942224 intergenic not near genes chrX_6_20940001 chrX_20940001 RAL-336 744 chrX 21009828 21009842 chrX 21009935 21009950 4 107 0.5 1.5 1.0 2.0 122 chrX 21009828 intergenic not near genes chrX 21009889 intergenic not near genes chrX 21009950 intergenic not near genes chrX_4_21005001 chrX_21005001 RAL-336 745 chrX 21042556 21042574 chrX 21045341 21045375 17 2790 16.5 24.5 20.5 0.8 2819 chrX 21042556 exon Mgstl + chrX 21043966 exon,3` UTR Mgstl +,CR44431 - chrX 21045375 intron Cbs + chrX_17_21040001 chrX_21040001 RAL-336 746 chrX 21055692 21055723 chrX 21055768 21055799 4 76 1.0 3.0 2.0 1.3 107 chrX 21055692 intron bves + chrX 21055746 intron bves + chrX 21055799 intron bves + chrX_4_21055001 chrX_21055001 RAL-336 747 chrX 21268068 21268087 chrX 21268149 21268168 4 81 2.5 4.0 3.2 1.0 100 chrX 21268068 intron CG32521 - chrX 21268118 intron CG32521 - chrX 21268168 intron CG32521 - chrX_4_21265001 chrX_21265001 RAL-336 748 chrX 21458697 21458731 chrX 21464133 21464167 Ivk 8 5436 0.5 0.0 0.2 6.7 5470 chrX 21458697 intergenic not near genes chrX 21461432 intergenic not near genes chrX 21464167 intergenic not near genes chrX_8_21460001 chrX_21460001 RAL-336 749 chrX 21474407 21474426 chrX 21474773 21474791 1731 7 365 4.0 4.0 4.0 1.4 384 chrX 21474407 intergenic not near genes chrX 21474599 intergenic not near genes chrX 21474791 intergenic not near genes chrX_7_21470001 chrX_21470001 RAL-336 750 chrX 21668262 21668285 chrX 21668342 21668370 4 84 8.5 10.5 9.5 0.4 108 chrX 21668262 intergenic not near genes chrX 21668316 intergenic not near genes chrX 21668370 intergenic not near genes chrX_4_21665001 chrX_21665001 RAL-336 751 chrX 22478871 22478896 chrX 22479004 22479029 4 133 0.0 0.0 0.0 4.0 158 chrX 22478871 intron CG12576 - chrX 22478950 intron CG12576 - chrX 22479029 intron CG12576 - chrX_4_22475001 chrX_22475001 RAL-336 752 chrX 22992411 22992425 chrX 22992541 22992548 7 129 2.5 5.0 3.8 1.5 137 chrX 22992411 intron,intron stnA -,stnB - chrX 22992480 intron,intron stnA -,stnB - chrX 22992548 intron,intron stnA -,stnB - chrX_7_22990001 chrX_22990001 RAL-336 753 chrX 22996330 22996338 chrX 23003547 23003570 roo 4 7228 2.0 3.0 2.5 1.1 7240 chrX 22996330 intron,intron stnA -,stnB - chrX 22999950 intron,intron stnA -,stnB - chrX 23003570 intron,intron stnA -,stnB - chrX_4_22995001 chrX_22995001 RAL-336