SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 47467 47490 chr2L 52561 52595 jockey 18 5097 8.0 8.0 8.0 2.0 5128 chr2L 47467 intron Cda5 - chr2L 50031 intron Cda5 - chr2L 52595 intron Cda5 - chr2L_18_50001 chr2L_50001 RAL-332 2 chr2L 297708 297715 chr2L 297791 297808 4 90 2.0 6.0 4.0 0.8 100 chr2L 297708 intergenic Pi3K21B +,Hop + chr2L 297758 intergenic Pi3K21B +,Hop + chr2L 297808 intergenic Pi3K21B +,Hop + chr2L_4_295001 chr2L_295001 RAL-332 3 chr2L 314139 314157 chr2L 314202 314233 11 70 4.0 1.5 2.8 2.9 94 chr2L 314139 intron Plc21C + chr2L 314186 intron Plc21C + chr2L 314233 intron Plc21C + chr2L_11_310001 chr2L_310001 RAL-332 4 chr2L 323466 323483 chr2L 323533 323561 10 68 7.5 4.5 6.0 1.4 95 chr2L 323466 intron Plc21C + chr2L 323514 intron Plc21C + chr2L 323561 intron Plc21C + chr2L_10_320001 chr2L_320001 RAL-332 5 chr2L 325130 325157 chr2L 325207 325211 10 73 9.0 10.0 9.5 1.0 81 chr2L 325130 intron Plc21C + chr2L 325170 intron Plc21C + chr2L 325211 intron Plc21C + chr2L_10_325001 chr2L_325001 RAL-332 6 chr2L 347885 347915 chr2L 355385 355401 blood 10 7494 4.0 1.5 2.8 2.6 7516 chr2L 347885 3` UTR Plc21C + chr2L 351643 intron Plc21C + chr2L 355401 3` UTR Plc21C + chr2L_10_350001 chr2L_350001 RAL-332 7 chr2L 407950 407973 chr2L 408029 408046 4 78 1.5 1.5 1.5 1.6 96 chr2L 407950 3` UTR RpI135 + chr2L 407998 intergenic RpI135 +,AP-2alpha - chr2L 408046 3` UTR AP-2alpha - chr2L_4_405001 chr2L_405001 RAL-332 8 chr2L 590332 590619 chr2L 590424 590719 4 94 14.5 6.5 10.5 0.3 387 chr2L 590332 intron Gsc - chr2L 590526 intron Gsc - chr2L 590719 intron Gsc - chr2L_4_590001 chr2L_590001 RAL-332 9 chr2L 590629 590651 chr2L 590719 590752 11 97 5.5 10.0 7.8 1.2 123 chr2L 590629 intron Gsc - chr2L 590690 intron Gsc - chr2L 590752 intron Gsc - chr2L_11_590001 chr2L_590001 RAL-332 10 chr2L 678707 678716 chr2L 678810 678821 7 104 7.5 4.5 6.0 1.0 114 chr2L 678707 intron ds - chr2L 678764 intron ds - chr2L 678821 intron ds - chr2L_7_675001 chr2L_675001 RAL-332 11 chr2L 678718 678737 chr2L 678807 678842 13 98 4.0 4.0 4.0 2.6 124 chr2L 678718 intron ds - chr2L 678780 intron ds - chr2L 678842 intron ds - chr2L_13_675001 chr2L_675001 RAL-332 12 chr2L 686922 686952 chr2L 695960 695983 roo 13 9033 5.0 4.0 4.5 2.4 9061 chr2L 686922 intron ds - chr2L 691452 intron ds - chr2L 695983 intron ds - chr2L_13_690001 chr2L_690001 RAL-332 13 chr2L 736897 736903 chr2L 736995 737008 4 103 3.0 6.0 4.5 0.7 111 chr2L 736897 intergenic Eaat2 - chr2L 736952 intergenic Eaat2 - chr2L 737008 intergenic Eaat2 - chr2L_4_735001 chr2L_735001 RAL-332 14 chr2L 764563 764578 chr2L 764655 764678 9 98 1.0 5.5 3.2 2.1 115 chr2L 764563 intergenic not near genes chr2L 764620 intergenic not near genes chr2L 764678 intergenic not near genes chr2L_9_760001 chr2L_760001 RAL-332 15 chr2L 877843 877851 chr2L 877924 877932 4 80 13.5 5.5 9.5 0.4 89 chr2L 877843 3` UTR,exon CG15824 -,ninaA + chr2L 877888 3` UTR,intron CG15824 -,ninaA + chr2L 877932 3` UTR,intron CG15824 -,ninaA + chr2L_4_875001 chr2L_875001 RAL-332 16 chr2L 877853 877875 chr2L 877921 877941 13 75 6.0 4.5 5.2 2.1 88 chr2L 877853 3` UTR,exon CG15824 -,ninaA + chr2L 877897 3` UTR,intron CG15824 -,ninaA + chr2L 877941 3` UTR,intron CG15824 -,ninaA + chr2L_13_875001 chr2L_875001 RAL-332 17 chr2L 922467 922491 chr2L 922548 922571 6 77 3.5 2.0 2.8 1.6 104 chr2L 922467 intergenic CG4341 + chr2L 922519 intergenic CG4341 + chr2L 922571 intergenic CG4341 + chr2L_6_920001 chr2L_920001 RAL-332 18 chr2L 931649 931669 chr2L 931716 931727 6 70 2.5 7.0 4.8 1.0 78 chr2L 931649 intron CG4341 + chr2L 931688 intron CG4341 + chr2L 931727 intron CG4341 + chr2L_6_930001 chr2L_930001 RAL-332 19 chr2L 968800 968834 chr2L 968878 968912 24 72 6.0 4.0 5.0 4.0 112 chr2L 968800 intergenic not near genes chr2L 968856 intergenic not near genes chr2L 968912 intergenic not near genes chr2L_24_965001 chr2L_965001 RAL-332 20 chr2L 1156858 1156875 chr2L 1156963 1156965 6 102 5.0 4.0 4.5 1.1 107 chr2L 1156858 intron capt - chr2L 1156912 intron capt - chr2L 1156965 intron capt - chr2L_6_1155001 chr2L_1155001 RAL-332 21 chr2L 1164250 1164283 chr2L 1164336 1164369 8 82 4.0 2.5 3.2 1.9 119 chr2L 1164250 intergenic IntS14 +,CG5080 - chr2L 1164310 intergenic IntS14 +,CG5080 - chr2L 1164369 intergenic IntS14 +,CG5080 - chr2L_8_1160001 chr2L_1160001 RAL-332 22 chr2L 1178681 1178700 chr2L 1178765 1178767 6 79 4.5 2.5 3.5 1.3 86 chr2L 1178681 intron CG4896 + chr2L 1178724 intron CG4896 + chr2L 1178767 intron CG4896 + chr2L_6_1175001 chr2L_1175001 RAL-332 23 chr2L 1220138 1220162 chr2L 1227603 1227628 blood 14 7464 6.5 4.0 5.2 2.3 7490 chr2L 1220138 intron CG42329 + chr2L 1223883 intron CG42329 + chr2L 1227628 intron CG42329 + chr2L_14_1220001 chr2L_1220001 RAL-332 24 chr2L 1294276 1294294 chr2L 1294341 1294375 10 76 1.5 2.0 1.8 3.6 99 chr2L 1294276 3` UTR robo3 + chr2L 1294326 3` UTR robo3 + chr2L 1294375 3` UTR robo3 + chr2L_10_1290001 chr2L_1290001 RAL-332 25 chr2L 1322035 1322055 chr2L 1322115 1322130 4 80 1.5 6.0 3.8 0.8 95 chr2L 1322035 intergenic not near genes chr2L 1322082 intergenic not near genes chr2L 1322130 intergenic not near genes chr2L_4_1320001 chr2L_1320001 RAL-332 26 chr2L 1570686 1570698 chr2L 1573558 1573570 F-element 4 2868 8.0 6.0 7.0 0.5 2884 chr2L 1570686 intron haf + chr2L 1572128 intron haf + chr2L 1573570 intron haf + chr2L_4_1570001 chr2L_1570001 RAL-332 27 chr2L 1570699 1570718 chr2L 1573554 1573590 F-element 9 2865 5.0 4.0 4.5 1.6 2891 chr2L 1570699 intron haf + chr2L 1572144 intron haf + chr2L 1573590 intron haf + chr2L_9_1570001 chr2L_1570001 RAL-332 28 chr2L 1615391 1615414 chr2L 1615468 1615496 9 77 0.0 7.0 3.5 2.0 105 chr2L 1615391 intergenic not near genes chr2L 1615444 intergenic not near genes chr2L 1615496 intergenic not near genes chr2L_9_1615001 chr2L_1615001 RAL-332 29 chr2L 1678980 1679009 chr2L 1686445 1686474 blood 15 7462 3.0 6.0 4.5 2.7 7494 chr2L 1678980 intron chinmo + chr2L 1682727 intron chinmo + chr2L 1686474 intron chinmo + chr2L_15_1680001 chr2L_1680001 RAL-332 30 chr2L 1711360 1711374 chr2L 1711679 1711698 mdg3 8 323 5.5 9.5 7.5 0.9 338 chr2L 1711360 3` UTR,3` UTR mRpL48 +,frtz - chr2L 1711529 3` UTR frtz - chr2L 1711698 3` UTR frtz - chr2L_8_1710001 chr2L_1710001 RAL-332 31 chr2L 1711378 1711389 chr2L 1711678 1711713 mdg3 9 316 2.0 9.5 5.8 1.3 335 chr2L 1711378 3` UTR,3` UTR mRpL48 +,frtz - chr2L 1711546 3` UTR frtz - chr2L 1711713 3` UTR frtz - chr2L_9_1710001 chr2L_1710001 RAL-332 32 chr2L 1721823 1721854 chr2L 1721907 1721938 7 82 0.5 6.5 3.5 1.6 115 chr2L 1721823 intron Rim2 - chr2L 1721880 intron Rim2 - chr2L 1721938 intron Rim2 - chr2L_7_1720001 chr2L_1720001 RAL-332 33 chr2L 1844699 1844711 chr2L 1844781 1844793 9 81 5.0 0.0 2.5 2.6 94 chr2L 1844699 exon wry + chr2L 1844746 intron wry + chr2L 1844793 intron wry + chr2L_9_1840001 chr2L_1840001 RAL-332 34 chr2L 1883435 1883442 chr2L 1884011 1884022 7 579 0.0 4.5 2.2 2.2 587 chr2L 1883435 intron CG15358 - chr2L 1883728 intron CG15358 - chr2L 1884022 exon CG15358 - chr2L_7_1880001 chr2L_1880001 RAL-332 35 chr2L 2038059 2038075 chr2L 2038138 2038145 7 76 12.0 3.5 7.8 0.8 86 chr2L 2038059 intron Su(dx) + chr2L 2038102 intron Su(dx) + chr2L 2038145 intron Su(dx) + chr2L_7_2035001 chr2L_2035001 RAL-332 36 chr2L 2047808 2047814 chr2L 2048001 2048009 5 192 5.5 0.0 2.8 1.3 201 chr2L 2047808 3` UTR Kebab + chr2L 2047908 3` UTR Kebab + chr2L 2048009 3` UTR Kebab + chr2L_5_2045001 chr2L_2045001 RAL-332 37 chr2L 2047817 2047822 chr2L 2047998 2048017 4 186 5.0 0.0 2.5 1.1 200 chr2L 2047817 3` UTR Kebab + chr2L 2047917 3` UTR Kebab + chr2L 2048017 3` UTR Kebab + chr2L_4_2045001 chr2L_2045001 RAL-332 38 chr2L 2100378 2100387 chr2L 2109526 2109532 roo 7 9149 7.0 4.5 5.8 1.0 9154 chr2L 2100378 intron dpr3 - chr2L 2104955 intron dpr3 - chr2L 2109532 intron dpr3 - chr2L_7_2100001 chr2L_2100001 RAL-332 39 chr2L 2100390 2100407 chr2L 2109525 2109539 roo 9 9141 4.5 4.5 4.5 1.6 9149 chr2L 2100390 intron dpr3 - chr2L 2104964 intron dpr3 - chr2L 2109539 intron dpr3 - chr2L_9_2100001 chr2L_2100001 RAL-332 40 chr2L 2112120 2112125 chr2L 2119782 2119782 opus 4 7661 6.5 8.5 7.5 0.5 7662 chr2L 2112120 intergenic not near genes chr2L 2115951 intergenic not near genes chr2L 2119782 intergenic not near genes chr2L_4_2115001 chr2L_2115001 RAL-332 41 chr2L 2112126 2112140 chr2L 2119773 2119802 opus 5 7655 5.0 5.5 5.2 0.8 7676 chr2L 2112126 intergenic not near genes chr2L 2115964 intergenic not near genes chr2L 2119802 intergenic not near genes chr2L_5_2115001 chr2L_2115001 RAL-332 42 chr2L 2125510 2125544 chr2L 2125852 2125888 17 344 6.5 44.5 25.5 0.6 378 chr2L 2125510 intergenic not near genes chr2L 2125699 intergenic not near genes chr2L 2125888 intergenic not near genes chr2L_17_2125001 chr2L_2125001 RAL-332 43 chr2L 2177382 2177411 chr2L 2177459 2177491 16 78 6.5 4.0 5.2 2.6 109 chr2L 2177382 intron aop - chr2L 2177436 intron aop - chr2L 2177491 intron aop - chr2L_16_2175001 chr2L_2175001 RAL-332 44 chr2L 2294048 2294074 chr2L 2299245 2299277 copia 11 5196 2.5 5.0 3.8 2.3 5229 chr2L 2294048 intergenic not near genes chr2L 2296662 intergenic not near genes chr2L 2299277 intergenic not near genes chr2L_11_2295001 chr2L_2295001 RAL-332 45 chr2L 2311074 2311086 chr2L 2311170 2311182 7 95 5.5 0.0 2.8 1.8 108 chr2L 2311074 intron CG9967 - chr2L 2311128 intron CG9967 - chr2L 2311182 intron CG9967 - chr2L_7_2310001 chr2L_2310001 RAL-332 46 chr2L 2311088 2311090 chr2L 2311169 2311186 4 92 5.0 0.0 2.5 1.1 98 chr2L 2311088 intron CG9967 - chr2L 2311137 intron CG9967 - chr2L 2311186 intron CG9967 - chr2L_4_2310001 chr2L_2310001 RAL-332 47 chr2L 2348122 2348136 chr2L 2348192 2348216 4 74 5.0 5.5 5.2 0.6 94 chr2L 2348122 intron,intron CG9967 -,eys + chr2L 2348169 intron,intron CG9967 -,eys + chr2L 2348216 intron,intron CG9967 -,eys + chr2L_4_2345001 chr2L_2345001 RAL-332 48 chr2L 2427381 2427400 chr2L 2427463 2427486 5 85 7.0 3.0 5.0 0.8 105 chr2L 2427381 3` UTR CR44912 - chr2L 2427434 3` UTR CR44912 - chr2L 2427486 3` UTR CR44912 - chr2L_5_2425001 chr2L_2425001 RAL-332 49 chr2L 2447838 2447858 chr2L 2447918 2447938 6 80 1.5 7.5 4.5 1.1 100 chr2L 2447838 intron dpp + chr2L 2447888 intron dpp + chr2L 2447938 intron dpp + chr2L_6_2445001 chr2L_2445001 RAL-332 50 chr2L 2503495 2503499 chr2L 2503632 2503639 5 143 3.0 6.0 4.5 0.9 144 chr2L 2503495 intergenic not near genes chr2L 2503567 intergenic not near genes chr2L 2503639 intergenic not near genes chr2L_5_2500001 chr2L_2500001 RAL-332 51 chr2L 2547895 2547906 chr2L 2547998 2548007 5 101 10.0 0.5 5.2 0.8 112 chr2L 2547895 intergenic not near genes chr2L 2547951 intergenic not near genes chr2L 2548007 intergenic not near genes chr2L_5_2545001 chr2L_2545001 RAL-332 52 chr2L 2547907 2547909 chr2L 2547997 2548011 6 98 10.0 0.5 5.2 1.0 104 chr2L 2547907 intergenic not near genes chr2L 2547959 intergenic not near genes chr2L 2548011 intergenic not near genes chr2L_6_2545001 chr2L_2545001 RAL-332 53 chr2L 2618039 2618070 chr2L 2618118 2618149 16 78 3.0 6.5 4.8 2.8 110 chr2L 2618039 intergenic not near genes chr2L 2618094 intergenic not near genes chr2L 2618149 intergenic not near genes chr2L_16_2615001 chr2L_2615001 RAL-332 54 chr2L 2661200 2661233 chr2L 2663038 2663050 I-element 14 1830 2.0 6.5 4.2 2.7 1850 chr2L 2661200 intergenic not near genes chr2L 2662125 intergenic not near genes chr2L 2663050 intergenic not near genes chr2L_14_2660001 chr2L_2660001 RAL-332 55 chr2L 2698874 2698895 chr2L 2698952 2698972 17 85 3.0 3.5 3.2 4.0 98 chr2L 2698874 intron CG31690 + chr2L 2698923 intron CG31690 + chr2L 2698972 intron CG31690 + chr2L_17_2695001 chr2L_2695001 RAL-332 56 chr2L 2804239 2804245 chr2L 2804328 2804334 4 89 12.5 7.0 9.8 0.4 95 chr2L 2804239 intergenic not near genes chr2L 2804286 intergenic not near genes chr2L 2804334 intergenic not near genes chr2L_4_2800001 chr2L_2800001 RAL-332 57 chr2L 2804248 2804273 chr2L 2804325 2804362 6 86 6.0 6.5 6.2 0.8 114 chr2L 2804248 intergenic not near genes chr2L 2804305 intergenic not near genes chr2L 2804362 intergenic not near genes chr2L_6_2800001 chr2L_2800001 RAL-332 58 chr2L 2826537 2826576 chr2L 2826629 2826640 8 81 0.0 4.5 2.2 2.5 103 chr2L 2826537 intron Duox - chr2L 2826588 intron Duox - chr2L 2826640 intron Duox - chr2L_8_2825001 chr2L_2825001 RAL-332 59 chr2L 3026216 3026250 chr2L 3026872 3026906 18 659 53.5 40.5 47.0 0.4 690 chr2L 3026216 3` UTR CG3542 + chr2L 3026561 3` UTR CG3605 - chr2L 3026906 exon CG3605 - chr2L_18_3025001 chr2L_3025001 RAL-332 60 chr2L 3044918 3044923 chr2L 3045003 3045009 6 89 7.0 5.0 6.0 0.9 91 chr2L 3044918 intron v(2)k05816 + chr2L 3044964 intron v(2)k05816 + chr2L 3045009 intron v(2)k05816 + chr2L_6_3040001 chr2L_3040001 RAL-332 61 chr2L 3044924 3044932 chr2L 3045001 3045026 13 88 4.5 4.5 4.5 2.4 102 chr2L 3044924 intron v(2)k05816 + chr2L 3044975 intron v(2)k05816 + chr2L 3045026 intron v(2)k05816 + chr2L_13_3040001 chr2L_3040001 RAL-332 62 chr2L 3073029 3073061 chr2L 3078232 3078264 copia 15 5198 7.0 3.5 5.2 2.4 5235 chr2L 3073029 intron toc - chr2L 3075646 intron toc - chr2L 3078264 intron toc - chr2L_15_3075001 chr2L_3075001 RAL-332 63 chr2L 3087383 3087416 chr2L 3087491 3087521 9 106 4.0 2.5 3.2 2.1 138 chr2L 3087383 intron toc - chr2L 3087452 intron toc - chr2L 3087521 intron toc - chr2L_9_3085001 chr2L_3085001 RAL-332 64 chr2L 3147273 3147306 chr2L 3147350 3147382 18 74 5.5 7.5 6.5 2.4 109 chr2L 3147273 3` UTR Mad - chr2L 3147328 3` UTR Mad - chr2L 3147382 3` UTR Mad - chr2L_18_3145001 chr2L_3145001 RAL-332 65 chr2L 3152506 3152522 chr2L 3152583 3152608 8 82 4.0 7.5 5.8 1.2 102 chr2L 3152506 intron Mad - chr2L 3152557 intron Mad - chr2L 3152608 intron Mad - chr2L_8_3150001 chr2L_3150001 RAL-332 66 chr2L 3156532 3156559 chr2L 3156628 3156655 4 92 2.0 2.0 2.0 1.3 123 chr2L 3156532 intron Mad - chr2L 3156594 intron Mad - chr2L 3156655 intron Mad - chr2L_4_3155001 chr2L_3155001 RAL-332 67 chr2L 3191440 3191458 chr2L 3191536 3191538 6 92 3.5 1.0 2.2 1.9 98 chr2L 3191440 intron CG34393 - chr2L 3191489 intron CG34393 - chr2L 3191538 intron CG34393 - chr2L_6_3190001 chr2L_3190001 RAL-332 68 chr2L 3201012 3201030 chr2L 3201116 3201148 10 112 5.5 2.5 4.0 2.0 136 chr2L 3201012 intergenic not near genes chr2L 3201080 intergenic not near genes chr2L 3201148 intergenic not near genes chr2L_10_3200001 chr2L_3200001 RAL-332 69 chr2L 3202736 3202764 chr2L 3210165 3210184 mdg1 5 7427 2.5 1.0 1.8 1.8 7448 chr2L 3202736 intergenic not near genes chr2L 3206460 intergenic not near genes chr2L 3210184 intergenic CR45336 + chr2L_5_3205001 chr2L_3205001 RAL-332 70 chr2L 3251496 3251509 chr2L 3259061 3259074 springer 4 7565 6.0 2.0 4.0 0.8 7578 chr2L 3251496 intergenic not near genes chr2L 3255285 intergenic not near genes chr2L 3259074 intergenic not near genes chr2L_4_3255001 chr2L_3255001 RAL-332 71 chr2L 3291241 3291268 chr2L 3291320 3291348 8 78 2.5 5.0 3.8 1.7 107 chr2L 3291241 intergenic CG9664 - chr2L 3291294 3` UTR CG9664 - chr2L 3291348 3` UTR CG9664 - chr2L_8_3290001 chr2L_3290001 RAL-332 72 chr2L 3393281 3393316 chr2L 3393379 3393400 20 95 1.5 4.0 2.8 5.3 119 chr2L 3393281 intergenic not near genes chr2L 3393340 intergenic not near genes chr2L 3393400 intergenic not near genes chr2L_20_3390001 chr2L_3390001 RAL-332 73 chr2L 3401240 3401261 chr2L 3401323 3401323 4 74 1.0 1.5 1.2 1.8 83 chr2L 3401240 intergenic not near genes chr2L 3401282 intergenic not near genes chr2L 3401323 intergenic not near genes chr2L_4_3400001 chr2L_3400001 RAL-332 74 chr2L 3505448 3505479 chr2L 3505545 3505545 7 90 6.5 1.5 4.0 1.4 97 chr2L 3505448 intron tim - chr2L 3505496 intron tim - chr2L 3505545 intron tim - chr2L_7_3505001 chr2L_3505001 RAL-332 75 chr2L 3553546 3553569 chr2L 3553616 3553617 13 71 2.5 5.0 3.8 2.7 71 chr2L 3553546 intergenic not near genes chr2L 3553582 intergenic not near genes chr2L 3553617 intergenic not near genes chr2L_13_3550001 chr2L_3550001 RAL-332 76 chr2L 3627893 3627909 chr2L 3627972 3627978 9 80 4.5 4.0 4.2 1.7 85 chr2L 3627893 intron for - chr2L 3627936 intron for - chr2L 3627978 intron for - chr2L_9_3625001 chr2L_3625001 RAL-332 77 chr2L 3632268 3632276 chr2L 3632345 3632348 4 76 0.5 8.5 4.5 0.7 80 chr2L 3632268 intron for - chr2L 3632308 intron for - chr2L 3632348 intron for - chr2L_4_3630001 chr2L_3630001 RAL-332 78 chr2L 3649786 3649803 chr2L 3654988 3655005 copia 4 5201 1.0 1.0 1.0 2.0 5219 chr2L 3649786 intron for - chr2L 3652396 intron for - chr2L 3655005 intron for - chr2L_4_3650001 chr2L_3650001 RAL-332 79 chr2L 3785602 3785622 chr2L 3786376 3786380 4 762 23.0 32.5 27.8 0.1 778 chr2L 3785602 3` UTR CG31960 + chr2L 3785991 exon CG31958 + chr2L 3786380 intergenic CG31958 + chr2L_4_3785001 chr2L_3785001 RAL-332 80 chr2L 3819033 3819061 chr2L 3819115 3819126 10 76 3.0 2.0 2.5 2.9 93 chr2L 3819033 intergenic CR44077 + chr2L 3819080 intergenic not near genes chr2L 3819126 intergenic not near genes chr2L_10_3815001 chr2L_3815001 RAL-332 81 chr2L 3876256 3876275 chr2L 3876334 3876335 7 74 3.5 2.0 2.8 1.8 79 chr2L 3876256 intron capu - chr2L 3876296 intron capu - chr2L 3876335 intron capu - chr2L_7_3875001 chr2L_3875001 RAL-332 82 chr2L 3898268 3898308 chr2L 3898353 3898386 8 76 0.0 6.0 3.0 2.0 118 chr2L 3898268 intron capu - chr2L 3898327 intron capu - chr2L 3898386 intron capu - chr2L_8_3895001 chr2L_3895001 RAL-332 83 chr2L 3908393 3908426 chr2L 3908652 3908665 13 250 2.0 3.5 2.8 3.4 272 chr2L 3908393 intron fred - chr2L 3908529 intron fred - chr2L 3908665 intron fred - chr2L_13_3905001 chr2L_3905001 RAL-332 84 chr2L 4155611 4155625 chr2L 4155852 4155866 4 241 1.0 1.5 1.2 1.8 255 chr2L 4155611 intergenic not near genes chr2L 4155738 intergenic not near genes chr2L 4155866 intergenic not near genes chr2L_4_4155001 chr2L_4155001 RAL-332 85 chr2L 4181292 4181305 chr2L 4183908 4183936 Burdock 9 2628 2.5 1.0 1.8 3.2 2644 chr2L 4181292 intergenic not near genes chr2L 4182614 intergenic not near genes chr2L 4183936 intergenic not near genes chr2L_9_4180001 chr2L_4180001 RAL-332 86 chr2L 4300901 4300929 chr2L 4301100 4301117 19 195 4.5 3.0 3.8 4.0 216 chr2L 4300901 intron tutl + chr2L 4301009 intron tutl + chr2L 4301117 intron tutl + chr2L_19_4300001 chr2L_4300001 RAL-332 87 chr2L 4351473 4351502 chr2L 4351549 4351578 21 72 5.5 7.5 6.5 2.8 105 chr2L 4351473 intergenic CR44700 + chr2L 4351526 intergenic CR44700 + chr2L 4351578 intergenic CR44700 + chr2L_21_4350001 chr2L_4350001 RAL-332 88 chr2L 4430508 4430538 chr2L 4433771 4433791 7 3252 13.5 33.5 23.5 0.3 3283 chr2L 4430508 intron CG15431 - chr2L 4432150 intron CG15431 - chr2L 4433791 intron CG15431 - chr2L_7_4430001 chr2L_4430001 RAL-332 89 chr2L 4439430 4439457 chr2L 4439513 4439529 13 78 6.0 5.5 5.8 1.9 99 chr2L 4439430 5` UTR CG15431 - chr2L 4439480 5` UTR CG15431 - chr2L 4439529 intron CG15431 - chr2L_13_4435001 chr2L_4435001 RAL-332 90 chr2L 4487262 4487272 chr2L 4487352 4487372 7 97 0.5 6.5 3.5 1.6 110 chr2L 4487262 intron dp - chr2L 4487317 intron dp - chr2L 4487372 intron dp - chr2L_7_4485001 chr2L_4485001 RAL-332 91 chr2L 4576619 4576641 chr2L 4576851 4576878 12 233 0.5 3.5 2.0 4.0 259 chr2L 4576619 intron dp - chr2L 4576748 intron dp - chr2L 4576878 intron dp - chr2L_12_4575001 chr2L_4575001 RAL-332 92 chr2L 4601703 4601726 chr2L 4609143 4609167 mdg1 13 7440 8.0 7.0 7.5 1.5 7464 chr2L 4601703 intron dp - chr2L 4605435 intron dp - chr2L 4609167 intron dp - chr2L_13_4605001 chr2L_4605001 RAL-332 93 chr2L 4708746 4708755 chr2L 4708813 4708831 4 68 5.5 4.5 5.0 0.7 85 chr2L 4708746 intron CG34351 + chr2L 4708788 intron CG34351 + chr2L 4708831 intron CG34351 + chr2L_4_4705001 chr2L_4705001 RAL-332 94 chr2L 4789922 4789946 chr2L 4790004 4790030 18 81 6.0 3.0 4.5 3.3 108 chr2L 4789922 intron CG15630 - chr2L 4789976 intron CG15630 - chr2L 4790030 intron CG15630 - chr2L_18_4785001 chr2L_4785001 RAL-332 95 chr2L 4841069 4841104 chr2L 4841145 4841153 18 70 8.0 5.5 6.8 2.3 84 chr2L 4841069 intron CG12194 + chr2L 4841111 intron CG12194 + chr2L 4841153 exon CG12194 + chr2L_18_4840001 chr2L_4840001 RAL-332 96 chr2L 4869472 4869498 chr2L 4869552 4869578 8 78 1.5 7.5 4.5 1.5 106 chr2L 4869472 intron pog + chr2L 4869525 intron pog + chr2L 4869578 intron pog + chr2L_8_4865001 chr2L_4865001 RAL-332 97 chr2L 4953518 4953539 chr2L 4953759 4953776 pogo 7 239 5.0 0.5 2.8 1.8 258 chr2L 4953518 intergenic Jon25Bii - chr2L 4953647 intergenic not near genes chr2L 4953776 intergenic not near genes chr2L_7_4950001 chr2L_4950001 RAL-332 98 chr2L 5025134 5025164 chr2L 5025209 5025223 5 70 1.5 0.0 0.8 2.8 89 chr2L 5025134 intron vkg - chr2L 5025178 intron vkg - chr2L 5025223 intron vkg - chr2L_5_5025001 chr2L_5025001 RAL-332 99 chr2L 5040686 5040715 chr2L 5040782 5040811 11 94 2.0 1.5 1.8 3.9 125 chr2L 5040686 3` UTR,3` UTR,3` UTR CG14042 +,SP555 +,CG31650 - chr2L 5040748 3` UTR,3` UTR,3` UTR CG14042 +,SP555 +,CG31650 - chr2L 5040811 3` UTR,3` UTR,3` UTR CG14042 +,SP555 +,CG31650 - chr2L_11_5040001 chr2L_5040001 RAL-332 100 chr2L 5200537 5200545 chr2L 5215799 5215813 7 15259 46.5 41.5 44.0 0.2 15276 chr2L 5200537 exon Msp300 + chr2L 5208175 exon Cyp28d2 + chr2L 5215813 exon CG14034 - chr2L_7_5205001 chr2L_5205001 RAL-332 101 chr2L 5473868 5473877 chr2L 5474025 5474033 5 157 9.5 8.0 8.8 0.5 165 chr2L 5473868 intergenic not near genes chr2L 5473950 intergenic not near genes chr2L 5474033 intergenic not near genes chr2L_5_5470001 chr2L_5470001 RAL-332 102 chr2L 5473878 5473895 chr2L 5474023 5474032 7 152 4.0 6.5 5.2 1.1 154 chr2L 5473878 intergenic not near genes chr2L 5473955 intergenic not near genes chr2L 5474032 intergenic not near genes chr2L_7_5470001 chr2L_5470001 RAL-332 103 chr2L 5550115 5550129 chr2L 5550193 5550194 4 75 5.0 0.0 2.5 1.1 79 chr2L 5550115 exon CG14014 - chr2L 5550154 exon CG14014 - chr2L 5550194 exon CG14014 - chr2L_4_5550001 chr2L_5550001 RAL-332 104 chr2L 5695867 5695887 chr2L 5695958 5695970 7 87 1.5 4.5 3.0 1.8 103 chr2L 5695867 intergenic not near genes chr2L 5695918 intergenic not near genes chr2L 5695970 intergenic not near genes chr2L_7_5695001 chr2L_5695001 RAL-332 105 chr2L 5827711 5827741 chr2L 5836718 5836742 roo 15 9001 9.5 4.5 7.0 1.9 9031 chr2L 5827711 intron TrissinR + chr2L 5832226 intron TrissinR + chr2L 5836742 intron TrissinR + chr2L_15_5830001 chr2L_5830001 RAL-332 106 chr2L 5870489 5870507 chr2L 5870549 5870584 7 70 1.5 4.0 2.8 1.8 95 chr2L 5870489 intron rau - chr2L 5870536 intron rau - chr2L 5870584 intron rau - chr2L_7_5870001 chr2L_5870001 RAL-332 107 chr2L 5904464 5904471 chr2L 5904543 5904548 4 79 5.0 0.0 2.5 1.1 84 chr2L 5904464 intron CG9021 - chr2L 5904506 intron CG9021 - chr2L 5904548 intron CG9021 - chr2L_4_5900001 chr2L_5900001 RAL-332 108 chr2L 5942027 5942054 chr2L 5942119 5942146 4 92 3.0 4.0 3.5 0.9 119 chr2L 5942027 5` UTR CR45289 + chr2L 5942086 5` UTR CR45289 + chr2L 5942146 5` UTR CR45289 + chr2L_4_5940001 chr2L_5940001 RAL-332 109 chr2L 5982137 5982148 chr2L 5982216 5982226 5 78 11.0 3.5 7.2 0.6 89 chr2L 5982137 intron eIF-4a + chr2L 5982182 intron eIF-4a + chr2L 5982226 intron eIF-4a + chr2L_5_5980001 chr2L_5980001 RAL-332 110 chr2L 5982154 5982162 chr2L 5982210 5982230 10 64 5.5 3.0 4.2 1.9 76 chr2L 5982154 intron eIF-4a + chr2L 5982192 intron eIF-4a + chr2L 5982230 intron eIF-4a + chr2L_10_5980001 chr2L_5980001 RAL-332 111 chr2L 5993333 5993362 chr2L 5993424 5993453 16 88 3.5 8.0 5.8 2.4 120 chr2L 5993333 exon lid - chr2L 5993393 intron lid - chr2L 5993453 intron lid - chr2L_16_5990001 chr2L_5990001 RAL-332 112 chr2L 6007099 6007108 chr2L 6007175 6007184 4 74 1.5 0.0 0.8 2.2 85 chr2L 6007099 intergenic CG9098 -,Gal - chr2L 6007142 intergenic CG9098 -,Gal - chr2L 6007184 intergenic CG9098 -,Gal - chr2L_4_6005001 chr2L_6005001 RAL-332 113 chr2L 6037031 6037064 chr2L 6037109 6037142 14 73 3.5 3.5 3.5 3.1 111 chr2L 6037031 3` UTR CG9117 - chr2L 6037086 3` UTR CG9117 - chr2L 6037142 exon CG9117 - chr2L_14_6035001 chr2L_6035001 RAL-332 114 chr2L 6050450 6050468 chr2L 6050544 6050571 5 100 3.0 1.0 2.0 1.7 121 chr2L 6050450 intergenic CG12393 +,CG9135 + chr2L 6050510 intergenic CG12393 +,CG9135 + chr2L 6050571 intergenic CG12393 +,CG9135 + chr2L_5_6050001 chr2L_6050001 RAL-332 115 chr2L 6185439 6185470 chr2L 6185517 6185548 12 73 4.0 5.0 4.5 2.2 109 chr2L 6185439 intron CG34380 + chr2L 6185494 intron CG34380 + chr2L 6185548 intron CG34380 + chr2L_12_6185001 chr2L_6185001 RAL-332 116 chr2L 6283951 6283979 chr2L 6284054 6284090 11 108 5.5 4.0 4.8 1.9 139 chr2L 6283951 intron Ddr + chr2L 6284020 intron Ddr + chr2L 6284090 intron Ddr + chr2L_11_6280001 chr2L_6280001 RAL-332 117 chr2L 6296412 6296438 chr2L 6296497 6296531 16 89 5.0 6.0 5.5 2.5 119 chr2L 6296412 intron Ddr + chr2L 6296472 intron Ddr + chr2L 6296531 intron Ddr + chr2L_16_6295001 chr2L_6295001 RAL-332 118 chr2L 6308311 6308339 chr2L 6308394 6308416 11 78 1.0 4.5 2.8 2.9 105 chr2L 6308311 intron Ddr + chr2L 6308364 intron Ddr + chr2L 6308416 intron,3` UTR Ddr +,CG43922 - chr2L_11_6305001 chr2L_6305001 RAL-332 119 chr2L 6426858 6426887 chr2L 6445118 6445147 roo 15 18257 5.5 10.0 7.8 1.7 18289 chr2L 6426858 3` UTR CG9527 - chr2L 6436002 intron CG9527 - chr2L 6445147 exon CG9527 - chr2L_15_6435001 chr2L_6435001 RAL-332 120 chr2L 6483582 6483589 chr2L 6483665 6483672 6 83 13.5 10.0 11.8 0.5 90 chr2L 6483582 exon DLP + chr2L 6483627 exon DLP + chr2L 6483672 exon DLP + chr2L_6_6480001 chr2L_6480001 RAL-332 121 chr2L 6590091 6590125 chr2L 6590168 6590203 18 72 3.5 4.5 4.0 3.6 112 chr2L 6590091 intron CG11319 - chr2L 6590147 intron CG11319 - chr2L 6590203 intron CG11319 - chr2L_18_6590001 chr2L_6590001 RAL-332 122 chr2L 6597949 6597966 chr2L 6598013 6598031 12 65 4.0 4.0 4.0 2.4 82 chr2L 6597949 intron CG11319 - chr2L 6597990 intron CG11319 - chr2L 6598031 intron CG11319 - chr2L_12_6595001 chr2L_6595001 RAL-332 123 chr2L 6626884 6626919 chr2L 6626969 6626988 12 83 6.0 7.5 6.8 1.5 104 chr2L 6626884 intron Oatp26F - chr2L 6626936 intron Oatp26F - chr2L 6626988 intron Oatp26F - chr2L_12_6625001 chr2L_6625001 RAL-332 124 chr2L 6655529 6655542 chr2L 6655890 6655904 7 360 6.0 3.0 4.5 1.3 375 chr2L 6655529 exon CG31633 - chr2L 6655716 exon CG31633 - chr2L 6655904 exon CG31633 - chr2L_7_6655001 chr2L_6655001 RAL-332 125 chr2L 6724533 6724557 chr2L 6724613 6724623 9 76 2.0 2.0 2.0 3.0 90 chr2L 6724533 intron Liprin-alpha + chr2L 6724578 intron Liprin-alpha + chr2L 6724623 intron Liprin-alpha + chr2L_9_6720001 chr2L_6720001 RAL-332 126 chr2L 6740743 6740761 chr2L 6740821 6740832 6 80 0.0 5.0 2.5 1.7 89 chr2L 6740743 intergenic not near genes chr2L 6740788 intergenic not near genes chr2L 6740832 intergenic not near genes chr2L_6_6740001 chr2L_6740001 RAL-332 127 chr2L 6772002 6772018 chr2L 6772070 6772093 8 72 6.0 6.0 6.0 1.1 91 chr2L 6772002 intron CG11321 - chr2L 6772048 intron CG11321 - chr2L 6772093 intron CG11321 - chr2L_8_6770001 chr2L_6770001 RAL-332 128 chr2L 6799539 6799571 chr2L 6799627 6799648 5 83 0.5 1.5 1.0 2.5 109 chr2L 6799539 5` UTR CR43610 + chr2L 6799594 5` UTR CR43610 + chr2L 6799648 intergenic CR43610 +,CG17376 - chr2L_5_6795001 chr2L_6795001 RAL-332 129 chr2L 6876792 6876810 chr2L 6882963 6882992 diver 7 6177 6.0 4.0 5.0 1.2 6200 chr2L 6876792 intron Nlg2 + chr2L 6879892 intron Nlg2 + chr2L 6882992 intron Nlg2 + chr2L_7_6875001 chr2L_6875001 RAL-332 130 chr2L 7069027 7069060 chr2L 7069103 7069127 20 71 3.5 7.5 5.5 3.1 100 chr2L 7069027 exon CG11289 + chr2L 7069077 exon CG11289 + chr2L 7069127 exon CG11289 + chr2L_20_7065001 chr2L_7065001 RAL-332 131 chr2L 7089999 7090023 chr2L 7090076 7090089 15 72 4.0 3.0 3.5 3.3 90 chr2L 7089999 intergenic not near genes chr2L 7090044 intergenic not near genes chr2L 7090089 intergenic not near genes chr2L_15_7090001 chr2L_7090001 RAL-332 132 chr2L 7111755 7111782 chr2L 7111841 7111868 7 82 2.0 0.0 1.0 3.5 113 chr2L 7111755 intron Pvf3 - chr2L 7111812 intron Pvf3 - chr2L 7111868 intron Pvf3 - chr2L_7_7110001 chr2L_7110001 RAL-332 133 chr2L 7198006 7198022 chr2L 7198076 7198101 6 72 4.0 3.5 3.8 1.2 95 chr2L 7198006 intron CG4502 - chr2L 7198054 intron CG4502 - chr2L 7198101 intron CG4502 - chr2L_6_7195001 chr2L_7195001 RAL-332 134 chr2L 7244742 7244755 chr2L 7244866 7244880 6 124 0.5 12.0 6.2 0.8 138 chr2L 7244742 intron Ndae1 - chr2L 7244811 intron Ndae1 - chr2L 7244880 intron Ndae1 - chr2L_6_7240001 chr2L_7240001 RAL-332 135 chr2L 7249622 7249650 chr2L 7249704 7249722 11 80 5.5 1.5 3.5 2.4 100 chr2L 7249622 intergenic Ndae1 - chr2L 7249672 intergenic Ndae1 - chr2L 7249722 intergenic Ndae1 - chr2L_11_7245001 chr2L_7245001 RAL-332 136 chr2L 7295995 7296025 chr2L 7296133 7296137 5 125 2.5 3.0 2.8 1.3 142 chr2L 7295995 intergenic not near genes chr2L 7296066 intergenic not near genes chr2L 7296137 intergenic not near genes chr2L_5_7295001 chr2L_7295001 RAL-332 137 chr2L 7301301 7301330 chr2L 7301382 7301406 18 74 4.0 4.0 4.0 3.6 105 chr2L 7301301 intergenic not near genes chr2L 7301354 intergenic not near genes chr2L 7301406 intergenic not near genes chr2L_18_7300001 chr2L_7300001 RAL-332 138 chr2L 7343326 7343341 chr2L 7350442 7350457 roo 6 7116 13.0 10.0 11.5 0.5 7131 chr2L 7343326 intron Wnt6 + chr2L 7346892 intron Wnt6 + chr2L 7350457 intron Wnt6 + chr2L_6_7345001 chr2L_7345001 RAL-332 139 chr2L 7343345 7343357 chr2L 7350439 7350458 roo 11 7107 6.5 9.0 7.8 1.2 7113 chr2L 7343345 intron Wnt6 + chr2L 7346902 intron Wnt6 + chr2L 7350458 intron Wnt6 + chr2L_11_7345001 chr2L_7345001 RAL-332 140 chr2L 7435886 7435899 chr2L 7435954 7435964 7 70 2.5 6.5 4.5 1.3 78 chr2L 7435886 intergenic not near genes chr2L 7435925 intergenic not near genes chr2L 7435964 intergenic not near genes chr2L_7_7435001 chr2L_7435001 RAL-332 141 chr2L 7502748 7502770 chr2L 7502812 7502844 13 67 3.5 9.5 6.5 1.7 96 chr2L 7502748 intron RapGAP1 - chr2L 7502796 intron RapGAP1 - chr2L 7502844 intron RapGAP1 - chr2L_13_7500001 chr2L_7500001 RAL-332 142 chr2L 7510208 7510233 chr2L 7510347 7510369 5 137 3.5 1.5 2.5 1.4 161 chr2L 7510208 intron RapGAP1 - chr2L 7510288 intron RapGAP1 - chr2L 7510369 intron RapGAP1 - chr2L_5_7510001 chr2L_7510001 RAL-332 143 chr2L 7567950 7567962 chr2L 7568007 7568038 6 70 0.0 2.5 1.2 2.7 88 chr2L 7567950 intron RapGAP1 - chr2L 7567994 intron RapGAP1 - chr2L 7568038 intron RapGAP1 - chr2L_6_7565001 chr2L_7565001 RAL-332 144 chr2L 7629163 7629192 chr2L 7629247 7629279 10 81 2.0 6.5 4.2 1.9 116 chr2L 7629163 intergenic not near genes chr2L 7629221 intergenic not near genes chr2L 7629279 intergenic not near genes chr2L_10_7625001 chr2L_7625001 RAL-332 145 chr2L 7657771 7657786 chr2L 7657849 7657864 4 74 4.0 5.0 4.5 0.7 93 chr2L 7657771 intron Slob - chr2L 7657818 intron Slob - chr2L 7657864 intron Slob - chr2L_4_7655001 chr2L_7655001 RAL-332 146 chr2L 7751825 7751849 chr2L 7751908 7751933 7 77 4.5 8.5 6.5 0.9 108 chr2L 7751825 intergenic CG7203 - chr2L 7751879 intergenic CG7203 - chr2L 7751933 intergenic CG7203 - chr2L_7_7750001 chr2L_7750001 RAL-332 147 chr2L 7766639 7766655 chr2L 7766708 7766717 6 67 7.5 0.5 4.0 1.2 78 chr2L 7766639 intergenic not near genes chr2L 7766678 intergenic not near genes chr2L 7766717 intergenic not near genes chr2L_6_7765001 chr2L_7765001 RAL-332 148 chr2L 7867563 7867591 chr2L 7867657 7867685 9 90 6.0 2.5 4.2 1.7 122 chr2L 7867563 intron Proc - chr2L 7867624 intron Proc - chr2L 7867685 intron Proc - chr2L_9_7865001 chr2L_7865001 RAL-332 149 chr2L 7959043 7959058 chr2L 7960454 7960469 pogo 6 1411 8.0 5.0 6.5 0.8 1426 chr2L 7959043 intron Snoo - chr2L 7959756 intron Snoo - chr2L 7960469 intron Snoo - chr2L_6_7955001 chr2L_7955001 RAL-332 150 chr2L 7965550 7965572 chr2L 7965633 7965655 5 83 4.0 7.5 5.8 0.7 105 chr2L 7965550 intron Snoo - chr2L 7965602 intron Snoo - chr2L 7965655 intron Snoo - chr2L_5_7965001 chr2L_7965001 RAL-332 151 chr2L 7973078 7973099 chr2L 7973212 7973237 6 136 0.5 3.0 1.8 2.1 159 chr2L 7973078 intron Snoo - chr2L 7973158 intron Snoo - chr2L 7973237 intron Snoo - chr2L_6_7970001 chr2L_7970001 RAL-332 152 chr2L 7977089 7977108 chr2L 7984063 7984083 297 10 6973 2.0 6.5 4.2 1.9 6994 chr2L 7977089 intron Snoo - chr2L 7980586 intron Snoo - chr2L 7984083 intron,5` UTR Snoo -,CG7231 + chr2L_10_7980001 chr2L_7980001 RAL-332 153 chr2L 8013615 8013638 chr2L 8018820 8018829 copia 6 5202 4.0 0.0 2.0 2.0 5214 chr2L 8013615 intron Tg + chr2L 8016222 intron Tg + chr2L 8018829 intron Tg + chr2L_6_8015001 chr2L_8015001 RAL-332 154 chr2L 8018819 8018832 chr2L 8023589 8023616 Doc 4 4776 0.0 2.0 1.0 2.0 4797 chr2L 8018819 intron Tg + chr2L 8021218 intron Tg + chr2L 8023616 intron Tg + chr2L_4_8020001 chr2L_8020001 RAL-332 155 chr2L 8033032 8033054 chr2L 8033125 8033128 5 87 6.5 6.5 6.5 0.7 96 chr2L 8033032 intron,intron CG7367 -,Cka + chr2L 8033080 intron,intron CG7367 -,Cka + chr2L 8033128 intron,intron CG7367 -,Cka + chr2L_5_8030001 chr2L_8030001 RAL-332 156 chr2L 8085314 8085330 chr2L 8085490 8085512 11 182 3.5 3.5 3.5 2.4 198 chr2L 8085314 intron Bsg + chr2L 8085413 intron Bsg + chr2L 8085512 intron Bsg + chr2L_11_8085001 chr2L_8085001 RAL-332 157 chr2L 8166042 8166053 chr2L 8166131 8166143 5 89 5.0 5.5 5.2 0.8 101 chr2L 8166042 intron Piezo + chr2L 8166092 intron Piezo + chr2L 8166143 intron Piezo + chr2L_5_8165001 chr2L_8165001 RAL-332 158 chr2L 8244732 8244737 chr2L 8244854 8244856 4 120 5.5 4.5 5.0 0.7 124 chr2L 8244732 intron CG8086 - chr2L 8244794 intron CG8086 - chr2L 8244856 intron CG8086 - chr2L_4_8240001 chr2L_8240001 RAL-332 159 chr2L 8244742 8244747 chr2L 8244853 8244869 5 120 2.5 4.5 3.5 1.1 127 chr2L 8244742 intron CG8086 - chr2L 8244806 intron CG8086 - chr2L 8244869 intron CG8086 - chr2L_5_8240001 chr2L_8240001 RAL-332 160 chr2L 8271637 8271768 chr2L 8271699 8271869 5 88 0.5 0.0 0.2 4.2 232 chr2L 8271637 intron Btk29A - chr2L 8271753 intron Btk29A - chr2L 8271869 intron Btk29A - chr2L_5_8270001 chr2L_8270001 RAL-332 161 chr2L 8285025 8285031 chr2L 8285100 8285107 4 76 6.0 1.0 3.5 0.9 82 chr2L 8285025 intron Btk29A - chr2L 8285066 intron Btk29A - chr2L 8285107 intron Btk29A - chr2L_4_8285001 chr2L_8285001 RAL-332 162 chr2L 8285033 8285037 chr2L 8285095 8285113 4 72 5.5 1.0 3.2 1.0 80 chr2L 8285033 intron Btk29A - chr2L 8285073 intron Btk29A - chr2L 8285113 intron Btk29A - chr2L_4_8285001 chr2L_8285001 RAL-332 163 chr2L 8452420 8452454 chr2L 8461591 8461610 roo 6 9165 2.0 4.0 3.0 1.5 9190 chr2L 8452420 intron fu12 - chr2L 8457015 intron fu12 - chr2L 8461610 intron fu12 - chr2L_6_8455001 chr2L_8455001 RAL-332 164 chr2L 8632868 8632894 chr2L 8632952 8632979 12 86 8.5 5.0 6.8 1.5 111 chr2L 8632868 intron Sema-1a + chr2L 8632924 intron Sema-1a + chr2L 8632979 intron Sema-1a + chr2L_12_8630001 chr2L_8630001 RAL-332 165 chr2L 8723113 8723142 chr2L 8731490 8731500 Tirant 6 8371 7.5 5.5 6.5 0.8 8387 chr2L 8723113 intron raw - chr2L 8727306 intron raw - chr2L 8731500 intron raw - chr2L_6_8725001 chr2L_8725001 RAL-332 166 chr2L 8784706 8784725 chr2L 8784815 8784834 6 110 4.0 2.5 3.2 1.4 128 chr2L 8784706 intergenic not near genes chr2L 8784770 intergenic not near genes chr2L 8784834 intergenic not near genes chr2L_6_8780001 chr2L_8780001 RAL-332 167 chr2L 8789307 8789341 chr2L 8789383 8789417 20 70 6.0 6.0 6.0 2.9 110 chr2L 8789307 intergenic not near genes chr2L 8789362 intergenic not near genes chr2L 8789417 intergenic not near genes chr2L_20_8785001 chr2L_8785001 RAL-332 168 chr2L 8811848 8811871 chr2L 8811928 8811951 8 77 3.0 8.5 5.8 1.2 103 chr2L 8811848 intergenic not near genes chr2L 8811900 intergenic not near genes chr2L 8811951 intergenic not near genes chr2L_8_8810001 chr2L_8810001 RAL-332 169 chr2L 8902460 8902483 chr2L 8902607 8902624 6 143 1.5 8.5 5.0 1.0 164 chr2L 8902460 intron CG34398 + chr2L 8902542 intron CG34398 + chr2L 8902624 intron CG34398 + chr2L_6_8900001 chr2L_8900001 RAL-332 170 chr2L 8985593 8985624 chr2L 8985758 8985790 6 166 1.5 0.0 0.8 3.3 197 chr2L 8985593 intergenic rost - chr2L 8985692 intergenic rost - chr2L 8985790 intergenic rost - chr2L_6_8985001 chr2L_8985001 RAL-332 171 chr2L 8994107 8994133 chr2L 8994202 8994214 13 92 4.0 5.5 4.8 2.2 107 chr2L 8994107 3` UTR alien - chr2L 8994160 3` UTR alien - chr2L 8994214 3` UTR alien - chr2L_13_8990001 chr2L_8990001 RAL-332 172 chr2L 9000279 9000313 chr2L 9007789 9007800 roo 18 7504 6.5 4.0 5.2 2.9 7521 chr2L 9000279 intergenic Try29F + chr2L 9004040 intergenic not near genes chr2L 9007800 intergenic not near genes chr2L_18_9000001 chr2L_9000001 RAL-332 173 chr2L 9073275 9073278 chr2L 9073359 9073364 4 85 6.0 8.5 7.2 0.5 89 chr2L 9073275 intergenic not near genes chr2L 9073320 intergenic not near genes chr2L 9073364 intergenic not near genes chr2L_4_9070001 chr2L_9070001 RAL-332 174 chr2L 9073280 9073301 chr2L 9073354 9073381 15 80 1.5 6.0 3.8 3.1 101 chr2L 9073280 intergenic not near genes chr2L 9073330 intergenic not near genes chr2L 9073381 intergenic not near genes chr2L_15_9070001 chr2L_9070001 RAL-332 175 chr2L 9084336 9084340 chr2L 16217660 16217660 24 7133322 31.5 30.5 31.0 0.8 7133324 chr2L 9084336 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_24_12650001 chr2L_12650001 RAL-332 176 chr2L 9095588 9095606 chr2L 9095660 9095693 11 77 4.0 2.5 3.2 2.6 105 chr2L 9095588 intergenic not near genes chr2L 9095640 intergenic not near genes chr2L 9095693 intergenic not near genes chr2L_11_9095001 chr2L_9095001 RAL-332 177 chr2L 9255060 9255082 chr2L 9255148 9255170 16 85 2.5 9.0 5.8 2.4 110 chr2L 9255060 intergenic lectin-30A - chr2L 9255115 intergenic lectin-30A - chr2L 9255170 intergenic lectin-30A - chr2L_16_9255001 chr2L_9255001 RAL-332 178 chr2L 9274453 9274481 chr2L 9274529 9274553 18 74 6.5 3.5 5.0 3.0 100 chr2L 9274453 intron Ggamma30A + chr2L 9274503 intron Ggamma30A + chr2L 9274553 intron Ggamma30A + chr2L_18_9270001 chr2L_9270001 RAL-332 179 chr2L 9280008 9280021 chr2L 9280089 9280108 4 86 0.0 2.0 1.0 2.0 100 chr2L 9280008 intron Ggamma30A + chr2L 9280058 intron Ggamma30A + chr2L 9280108 intron Ggamma30A + chr2L_4_9280001 chr2L_9280001 RAL-332 180 chr2L 9287328 9287357 chr2L 9287425 9287445 10 96 2.0 5.5 3.8 2.1 117 chr2L 9287328 intron Ggamma30A + chr2L 9287386 intron Ggamma30A + chr2L 9287445 intron Ggamma30A + chr2L_10_9285001 chr2L_9285001 RAL-332 181 chr2L 9290789 9290799 chr2L 9290854 9290876 6 73 0.0 4.0 2.0 2.0 87 chr2L 9290789 intron Ggamma30A + chr2L 9290832 intron Ggamma30A + chr2L 9290876 intron Ggamma30A + chr2L_6_9290001 chr2L_9290001 RAL-332 182 chr2L 9297384 9297389 chr2L 9297457 9297462 4 74 9.0 6.0 7.5 0.5 78 chr2L 9297384 3` UTR Ggamma30A + chr2L 9297423 3` UTR Ggamma30A + chr2L 9297462 3` UTR Ggamma30A + chr2L_4_9295001 chr2L_9295001 RAL-332 183 chr2L 9297390 9297397 chr2L 9297455 9297474 7 74 5.5 5.5 5.5 1.1 84 chr2L 9297390 3` UTR Ggamma30A + chr2L 9297432 3` UTR Ggamma30A + chr2L 9297474 3` UTR Ggamma30A + chr2L_7_9295001 chr2L_9295001 RAL-332 184 chr2L 9303414 9303495 chr2L 9303478 9303572 11 73 0.0 0.0 0.0 11.0 158 chr2L 9303414 intergenic not near genes chr2L 9303493 intergenic not near genes chr2L 9303572 intergenic not near genes chr2L_11_9300001 chr2L_9300001 RAL-332 185 chr2L 9383113 9383145 chr2L 9383330 9383343 17 209 6.0 7.0 6.5 2.3 230 chr2L 9383113 intron Shawl - chr2L 9383228 intron Shawl - chr2L 9383343 intron Shawl - chr2L_17_9380001 chr2L_9380001 RAL-332 186 chr2L 9385146 9385154 chr2L 9385221 9385243 5 83 3.0 5.5 4.2 1.0 97 chr2L 9385146 intron Shawl - chr2L 9385194 intron Shawl - chr2L 9385243 intron Shawl - chr2L_5_9385001 chr2L_9385001 RAL-332 187 chr2L 9393498 9393521 chr2L 9396465 9396487 jockey 8 2960 7.0 6.5 6.8 1.0 2989 chr2L 9393498 intron Shawl - chr2L 9394992 intron Shawl - chr2L 9396487 intron Shawl - chr2L_8_9390001 chr2L_9390001 RAL-332 188 chr2L 9456931 9456961 chr2L 9457012 9457018 13 76 2.0 0.0 1.0 6.5 87 chr2L 9456931 intron numb + chr2L 9456974 intron numb + chr2L 9457018 intron numb + chr2L_13_9455001 chr2L_9455001 RAL-332 189 chr2L 9467014 9467051 chr2L 9467168 9467194 21 152 3.5 7.0 5.2 3.4 180 chr2L 9467014 intergenic not near genes chr2L 9467104 intergenic not near genes chr2L 9467194 intergenic not near genes chr2L_21_9465001 chr2L_9465001 RAL-332 190 chr2L 9490522 9490532 chr2L 9490602 9490612 4 80 10.0 7.5 8.8 0.4 90 chr2L 9490522 intergenic not near genes chr2L 9490567 intergenic not near genes chr2L 9490612 intergenic not near genes chr2L_4_9490001 chr2L_9490001 RAL-332 191 chr2L 9490533 9490552 chr2L 9490601 9490615 15 74 2.5 7.0 4.8 2.6 82 chr2L 9490533 intergenic not near genes chr2L 9490574 intergenic not near genes chr2L 9490615 intergenic not near genes chr2L_15_9490001 chr2L_9490001 RAL-332 192 chr2L 9496932 9496946 chr2L 9497036 9497057 5 109 0.0 3.5 1.8 1.8 125 chr2L 9496932 intron CG33298 + chr2L 9496994 intron CG33298 + chr2L 9497057 intron CG33298 + chr2L_5_9495001 chr2L_9495001 RAL-332 193 chr2L 9524138 9524165 chr2L 9524228 9524249 9 86 5.0 3.0 4.0 1.8 111 chr2L 9524138 intron Oatp30B + chr2L 9524194 intron Oatp30B + chr2L 9524249 intron Oatp30B + chr2L_9_9520001 chr2L_9520001 RAL-332 194 chr2L 9683694 9683719 chr2L 9683771 9683776 4 72 3.5 3.0 3.2 1.0 82 chr2L 9683694 3` UTR Pka-C1 - chr2L 9683735 3` UTR Pka-C1 - chr2L 9683776 3` UTR Pka-C1 - chr2L_4_9680001 chr2L_9680001 RAL-332 195 chr2L 9716860 9716888 chr2L 9716947 9716975 7 84 5.0 5.5 5.2 1.1 115 chr2L 9716860 3` UTR Nckx30C - chr2L 9716918 3` UTR Nckx30C - chr2L 9716975 3` UTR Nckx30C - chr2L_7_9715001 chr2L_9715001 RAL-332 196 chr2L 9730976 9731000 chr2L 9731059 9731083 8 82 1.5 2.0 1.8 2.9 107 chr2L 9730976 intron Nckx30C - chr2L 9731030 intron Nckx30C - chr2L 9731083 intron Nckx30C - chr2L_8_9730001 chr2L_9730001 RAL-332 197 chr2L 9828402 9828413 chr2L 9828538 9828565 12 141 35.0 38.5 36.8 0.3 163 chr2L 9828402 intron nAChRalpha6 - chr2L 9828484 intron nAChRalpha6 - chr2L 9828565 intron nAChRalpha6 - chr2L_12_9825001 chr2L_9825001 RAL-332 198 chr2L 9864409 9864429 chr2L 9864490 9864510 7 78 6.0 6.5 6.2 1.0 101 chr2L 9864409 intron nAChRalpha6 - chr2L 9864460 intron nAChRalpha6 - chr2L 9864510 intron nAChRalpha6 - chr2L_7_9860001 chr2L_9860001 RAL-332 199 chr2L 9892521 9892532 chr2L 9892578 9892588 6 67 3.5 3.0 3.2 1.4 67 chr2L 9892521 intron mtDNA-helicase - chr2L 9892554 intron mtDNA-helicase - chr2L 9892588 intron mtDNA-helicase - chr2L_6_9890001 chr2L_9890001 RAL-332 200 chr2L 9973724 9973758 chr2L 9980843 9980858 HMS-Beagle 21 7114 6.0 6.5 6.2 2.9 7134 chr2L 9973724 intergenic not near genes chr2L 9977291 intergenic not near genes chr2L 9980858 intergenic not near genes chr2L_21_9975001 chr2L_9975001 RAL-332 201 chr2L 9982199 9982232 chr2L 9982302 9982335 5 103 0.0 3.0 1.5 2.0 136 chr2L 9982199 intergenic not near genes chr2L 9982267 intergenic not near genes chr2L 9982335 intergenic not near genes chr2L_5_9980001 chr2L_9980001 RAL-332 202 chr2L 9986351 9986379 chr2L 9986446 9986448 16 85 7.5 7.5 7.5 1.9 97 chr2L 9986351 intron bib + chr2L 9986400 intron bib + chr2L 9986448 intron bib + chr2L_16_9985001 chr2L_9985001 RAL-332 203 chr2L 10051742 10051752 chr2L 10051811 10051837 7 77 4.5 9.0 6.8 0.9 95 chr2L 10051742 5` UTR CR44874 + chr2L 10051790 5` UTR CR44874 + chr2L 10051837 5` UTR CR44874 + chr2L_7_10050001 chr2L_10050001 RAL-332 204 chr2L 10059580 10059614 chr2L 10059666 10059686 21 83 6.5 7.0 6.8 2.7 106 chr2L 10059580 3` UTR Pen + chr2L 10059633 3` UTR Pen + chr2L 10059686 3` UTR Pen + chr2L_21_10055001 chr2L_10055001 RAL-332 205 chr2L 10105293 10105313 chr2L 10105360 10105367 6 62 2.5 3.0 2.8 1.6 74 chr2L 10105293 intron,intron CG44153 -,CG34109 + chr2L 10105330 intron,intron CG44153 -,CG34109 + chr2L 10105367 intron,intron CG44153 -,CG34109 + chr2L_6_10105001 chr2L_10105001 RAL-332 206 chr2L 10153201 10153232 chr2L 10153280 10153298 15 75 4.5 8.5 6.5 2.0 97 chr2L 10153201 intron,exon CG44153 -,CG4839 + chr2L 10153250 intron,intron CG44153 -,CG4839 + chr2L 10153298 intron,intron CG44153 -,CG4839 + chr2L_15_10150001 chr2L_10150001 RAL-332 207 chr2L 10156320 10156354 chr2L 10163790 10163802 blood 15 7464 5.0 1.5 3.2 3.6 7482 chr2L 10156320 intron,3` UTR CG44153 -,CG4839 + chr2L 10160061 intron CG44153 - chr2L 10163802 intron CG44153 - chr2L_15_10160001 chr2L_10160001 RAL-332 208 chr2L 10474384 10474413 chr2L 10474465 10474488 12 76 3.5 0.0 1.8 4.3 104 chr2L 10474384 intergenic RluA-1 - chr2L 10474436 intergenic RluA-1 - chr2L 10474488 intergenic RluA-1 - chr2L_12_10470001 chr2L_10470001 RAL-332 209 chr2L 10580793 10580823 chr2L 10580872 10580904 16 79 6.0 3.5 4.8 2.8 111 chr2L 10580793 intron Trim9 + chr2L 10580848 intron Trim9 + chr2L 10580904 intron Trim9 + chr2L_16_10580001 chr2L_10580001 RAL-332 210 chr2L 10592844 10592868 chr2L 10600506 10600527 opus 6 7659 2.0 6.0 4.0 1.2 7683 chr2L 10592844 intron Trim9 + chr2L 10596686 intron Trim9 + chr2L 10600527 intron Trim9 + chr2L_6_10595001 chr2L_10595001 RAL-332 211 chr2L 10621125 10621151 chr2L 10621199 10621234 14 78 4.5 4.0 4.2 2.7 109 chr2L 10621125 intron Trim9 + chr2L 10621180 intron Trim9 + chr2L 10621234 intron Trim9 + chr2L_14_10620001 chr2L_10620001 RAL-332 212 chr2L 10640644 10640660 chr2L 10640733 10640749 8 86 11.5 9.0 10.2 0.7 105 chr2L 10640644 exon CG31872 + chr2L 10640696 exon CG31872 + chr2L 10640749 exon CG31872 + chr2L_8_10640001 chr2L_10640001 RAL-332 213 chr2L 10640661 10640672 chr2L 10640732 10640757 12 85 8.0 8.5 8.2 1.3 96 chr2L 10640661 exon CG31872 + chr2L 10640709 exon CG31872 + chr2L 10640757 exon CG31872 + chr2L_12_10640001 chr2L_10640001 RAL-332 214 chr2L 10704922 10704946 chr2L 10705012 10705023 6 88 3.0 0.0 1.5 2.4 101 chr2L 10704922 intron,3` UTR Lip2 -,CG6415 + chr2L 10704972 intron Lip2 - chr2L 10705023 intron Lip2 - chr2L_6_10700001 chr2L_10700001 RAL-332 215 chr2L 10705460 10705470 chr2L 10705538 10705553 7 81 3.0 7.5 5.2 1.1 93 chr2L 10705460 exon Lip2 - chr2L 10705506 intron Lip2 - chr2L 10705553 intron Lip2 - chr2L_7_10705001 chr2L_10705001 RAL-332 216 chr2L 10705471 10705479 chr2L 10705533 10705560 5 74 1.0 7.0 4.0 1.0 89 chr2L 10705471 exon Lip2 - chr2L 10705516 intron Lip2 - chr2L 10705560 intron Lip2 - chr2L_5_10705001 chr2L_10705001 RAL-332 217 chr2L 10785058 10785092 chr2L 10785133 10785157 20 74 4.0 7.5 5.8 2.9 99 chr2L 10785058 intron CG31869 - chr2L 10785108 intron CG31869 - chr2L 10785157 intron CG31869 - chr2L_20_10785001 chr2L_10785001 RAL-332 218 chr2L 10813677 10813704 chr2L 10813828 10813843 9 146 6.5 8.5 7.5 1.1 166 chr2L 10813677 intron Nos - chr2L 10813760 intron Nos - chr2L 10813843 intron Nos - chr2L_9_10810001 chr2L_10810001 RAL-332 219 chr2L 10862843 10862854 chr2L 10864457 10864468 Rt1c 5 1614 14.5 11.5 13.0 0.4 1625 chr2L 10862843 3` UTR CR43807 - chr2L 10863656 intron CR43807 - chr2L 10864468 3` UTR CR43807 - chr2L_5_10860001 chr2L_10860001 RAL-332 220 chr2L 10862856 10862880 chr2L 10864453 10864457 Rt1c 17 1603 7.5 9.0 8.2 1.8 1601 chr2L 10862856 3` UTR CR43807 - chr2L 10863656 intron CR43807 - chr2L 10864457 intron CR43807 - chr2L_17_10860001 chr2L_10860001 RAL-332 221 chr2L 10867951 10867953 chr2L 10868060 10868066 4 114 12.0 4.0 8.0 0.4 115 chr2L 10867951 intergenic not near genes chr2L 10868008 intergenic not near genes chr2L 10868066 intergenic not near genes chr2L_4_10865001 chr2L_10865001 RAL-332 222 chr2L 10867956 10867973 chr2L 10868059 10868073 10 107 6.5 4.0 5.2 1.6 117 chr2L 10867956 intergenic not near genes chr2L 10868014 intergenic not near genes chr2L 10868073 intergenic not near genes chr2L_10_10865001 chr2L_10865001 RAL-332 223 chr2L 10873049 10873081 chr2L 10873129 10873161 12 78 7.0 9.0 8.0 1.3 112 chr2L 10873049 intergenic not near genes chr2L 10873105 intergenic not near genes chr2L 10873161 intergenic not near genes chr2L_12_10870001 chr2L_10870001 RAL-332 224 chr2L 10912987 10913002 chr2L 10913066 10913081 11 78 11.0 5.0 8.0 1.2 94 chr2L 10912987 intergenic not near genes chr2L 10913034 intergenic not near genes chr2L 10913081 intergenic not near genes chr2L_11_10910001 chr2L_10910001 RAL-332 225 chr2L 10922260 10922292 chr2L 10922336 10922351 19 72 5.5 5.0 5.2 3.1 91 chr2L 10922260 intron dpr2 - chr2L 10922306 intron dpr2 - chr2L 10922351 intron dpr2 - chr2L_19_10920001 chr2L_10920001 RAL-332 226 chr2L 10946950 10946977 chr2L 10956160 10956177 roo 23 9208 5.5 9.5 7.5 2.7 9227 chr2L 10946950 intron dpr2 - chr2L 10951564 intron dpr2 - chr2L 10956177 intron dpr2 - chr2L_23_10950001 chr2L_10950001 RAL-332 227 chr2L 10986989 10986999 chr2L 10988293 10988295 5 1298 14.0 34.0 24.0 0.2 1306 chr2L 10986989 intron piwi - chr2L 10987642 intergenic CG12253 +,piwi - chr2L 10988295 exon CG12253 + chr2L_5_10985001 chr2L_10985001 RAL-332 228 chr2L 10986988 10987025 chr2L 10988296 10988321 9 1304 13.5 32.0 22.8 0.4 1333 chr2L 10986988 intron piwi - chr2L 10987654 intergenic CG12253 +,piwi - chr2L 10988321 exon CG12253 + chr2L_9_10985001 chr2L_10985001 RAL-332 229 chr2L 11041584 11041599 chr2L 11041690 11041712 8 107 6.0 13.0 9.5 0.8 128 chr2L 11041584 intron Samuel - chr2L 11041648 intron Samuel - chr2L 11041712 intron Samuel - chr2L_8_11040001 chr2L_11040001 RAL-332 230 chr2L 11224057 11224091 chr2L 11224167 11224202 12 108 3.5 4.0 3.8 2.5 145 chr2L 11224057 intron ab + chr2L 11224130 intron ab + chr2L 11224202 intron ab + chr2L_12_11220001 chr2L_11220001 RAL-332 231 chr2L 11245269 11245276 chr2L 11245334 11245354 5 73 8.5 5.5 7.0 0.6 85 chr2L 11245269 intron ab + chr2L 11245312 intron ab + chr2L 11245354 intron ab + chr2L_5_11245001 chr2L_11245001 RAL-332 232 chr2L 11339735 11339743 chr2L 11339812 11339820 5 77 5.0 4.0 4.5 0.9 85 chr2L 11339735 intergenic not near genes chr2L 11339778 intergenic not near genes chr2L 11339820 intergenic not near genes chr2L_5_11335001 chr2L_11335001 RAL-332 233 chr2L 11380613 11380640 chr2L 11380688 11380701 9 74 3.0 2.0 2.5 2.6 88 chr2L 11380613 intergenic not near genes chr2L 11380657 intergenic not near genes chr2L 11380701 intergenic not near genes chr2L_9_11380001 chr2L_11380001 RAL-332 234 chr2L 11404783 11404811 chr2L 11404859 11404887 9 76 1.5 2.5 2.0 3.0 104 chr2L 11404783 intergenic not near genes chr2L 11404835 intergenic not near genes chr2L 11404887 intergenic not near genes chr2L_9_11400001 chr2L_11400001 RAL-332 235 chr2L 11413310 11413321 chr2L 11413419 11413432 4 113 4.5 4.0 4.2 0.8 122 chr2L 11413310 intergenic not near genes chr2L 11413371 intergenic not near genes chr2L 11413432 intergenic not near genes chr2L_4_11410001 chr2L_11410001 RAL-332 236 chr2L 11450123 11450157 chr2L 11450209 11450223 6 74 0.0 4.5 2.2 1.9 100 chr2L 11450123 intergenic not near genes chr2L 11450173 intergenic not near genes chr2L 11450223 intergenic not near genes chr2L_6_11450001 chr2L_11450001 RAL-332 237 chr2L 11491135 11491159 chr2L 11491207 11491219 9 72 1.5 3.5 2.5 2.6 84 chr2L 11491135 intergenic not near genes chr2L 11491177 intergenic not near genes chr2L 11491219 intergenic not near genes chr2L_9_11490001 chr2L_11490001 RAL-332 238 chr2L 11540591 11540609 chr2L 11547984 11547998 Tabor 5 7393 2.0 3.0 2.5 1.4 7407 chr2L 11540591 intergenic not near genes chr2L 11544294 intergenic not near genes chr2L 11547998 intergenic not near genes chr2L_5_11540001 chr2L_11540001 RAL-332 239 chr2L 11563634 11563668 chr2L 11568838 11568856 copia 11 5199 3.0 4.0 3.5 2.4 5222 chr2L 11563634 intergenic not near genes chr2L 11566245 intergenic not near genes chr2L 11568856 intergenic not near genes chr2L_11_11565001 chr2L_11565001 RAL-332 240 chr2L 11612662 11612698 chr2L 11612750 11612786 23 84 7.0 3.5 5.2 3.7 124 chr2L 11612662 intron kek2 + chr2L 11612724 intron kek2 + chr2L 11612786 intron kek2 + chr2L_23_11610001 chr2L_11610001 RAL-332 241 chr2L 11614070 11614086 chr2L 11615546 11615575 hopper2 4 1486 3.0 1.0 2.0 1.3 1505 chr2L 11614070 intron kek2 + chr2L 11614822 intron kek2 + chr2L 11615575 intron kek2 + chr2L_4_11610001 chr2L_11610001 RAL-332 242 chr2L 11635523 11635543 chr2L 11635588 11635599 6 69 5.5 8.5 7.0 0.8 76 chr2L 11635523 intergenic not near genes chr2L 11635561 intergenic not near genes chr2L 11635599 intergenic not near genes chr2L_6_11635001 chr2L_11635001 RAL-332 243 chr2L 11674696 11674707 chr2L 11675049 11675060 5 353 7.5 8.0 7.8 0.6 364 chr2L 11674696 intergenic not near genes chr2L 11674878 intergenic not near genes chr2L 11675060 intergenic not near genes chr2L_5_11670001 chr2L_11670001 RAL-332 244 chr2L 11674711 11674726 chr2L 11675046 11675065 6 343 3.5 7.0 5.2 1.0 354 chr2L 11674711 intergenic not near genes chr2L 11674888 intergenic not near genes chr2L 11675065 intergenic not near genes chr2L_6_11670001 chr2L_11670001 RAL-332 245 chr2L 11680321 11680331 chr2L 11680440 11680445 6 118 4.5 5.5 5.0 1.0 124 chr2L 11680321 intergenic not near genes chr2L 11680383 intergenic not near genes chr2L 11680445 intergenic not near genes chr2L_6_11680001 chr2L_11680001 RAL-332 246 chr2L 11713508 11713513 chr2L 11720976 11720981 blood 4 7468 9.0 0.0 4.5 0.7 7473 chr2L 11713508 intergenic not near genes chr2L 11717244 intergenic not near genes chr2L 11720981 intergenic CR44143 + chr2L_4_11715001 chr2L_11715001 RAL-332 247 chr2L 12153943 12153962 chr2L 12154010 12154039 12 74 6.5 3.5 5.0 2.0 96 chr2L 12153943 exon CG31760 + chr2L 12153991 intron CG31760 + chr2L 12154039 intron CG31760 + chr2L_12_12150001 chr2L_12150001 RAL-332 248 chr2L 12234040 12234065 chr2L 12234127 12234160 8 92 2.5 2.0 2.2 2.5 120 chr2L 12234040 intron aret + chr2L 12234100 intron aret + chr2L 12234160 intron aret + chr2L_8_12230001 chr2L_12230001 RAL-332 249 chr2L 12363186 12363203 chr2L 12363274 12363290 4 86 0.0 4.5 2.2 1.2 104 chr2L 12363186 intron bru-2 + chr2L 12363238 intron bru-2 + chr2L 12363290 intron bru-2 + chr2L_4_12360001 chr2L_12360001 RAL-332 250 chr2L 12398670 12398687 chr2L 12398758 12398761 8 83 5.5 8.5 7.0 1.0 91 chr2L 12398670 exon Pkd2 + chr2L 12398716 exon Pkd2 + chr2L 12398761 exon Pkd2 + chr2L_8_12395001 chr2L_12395001 RAL-332 251 chr2L 12487885 12487914 chr2L 12487966 12487995 11 79 7.5 5.0 6.2 1.5 110 chr2L 12487885 intron bun - chr2L 12487940 intron bun - chr2L 12487995 intron bun - chr2L_11_12485001 chr2L_12485001 RAL-332 252 chr2L 12529242 12529446 chr2L 12529375 12529522 8 81 2.5 1.5 2.0 2.7 280 chr2L 12529242 intron bun - chr2L 12529382 intron bun - chr2L 12529522 intron bun - chr2L_8_12525001 chr2L_12525001 RAL-332 253 chr2L 12558320 12558326 chr2L 12565448 12565455 HMS-Beagle 4 7128 3.5 0.5 2.0 1.3 7135 chr2L 12558320 intergenic not near genes chr2L 12561888 intergenic not near genes chr2L 12565455 intergenic not near genes chr2L_4_12560001 chr2L_12560001 RAL-332 254 chr2L 12558330 12558351 chr2L 12565447 12565480 HMS-Beagle 10 7124 1.0 0.5 0.8 5.6 7150 chr2L 12558330 intergenic not near genes chr2L 12561905 intergenic not near genes chr2L 12565480 intergenic not near genes chr2L_10_12560001 chr2L_12560001 RAL-332 255 chr2L 12587022 12587048 chr2L 12587099 12587111 10 70 5.0 4.5 4.8 1.7 89 chr2L 12587022 intergenic not near genes chr2L 12587066 intergenic not near genes chr2L 12587111 intergenic not near genes chr2L_10_12585001 chr2L_12585001 RAL-332 256 chr2L 12612044 12612071 chr2L 12612163 12612190 13 114 5.0 5.5 5.2 2.1 146 chr2L 12612044 intron,intron nub +,Ref2 - chr2L 12612117 intron,intron nub +,Ref2 - chr2L 12612190 intron,intron nub +,Ref2 - chr2L_13_12610001 chr2L_12610001 RAL-332 257 chr2L 12619903 12619906 chr2L 12619979 12619982 4 76 3.0 4.5 3.8 0.8 79 chr2L 12619903 intron,intron nub +,Ref2 - chr2L 12619942 intron,intron nub +,Ref2 - chr2L 12619982 intron,intron nub +,Ref2 - chr2L_4_12615001 chr2L_12615001 RAL-332 258 chr2L 12699846 12699879 chr2L 12699923 12699931 19 69 4.5 3.0 3.8 4.0 85 chr2L 12699846 exon CG17036 - chr2L 12699888 exon CG17036 - chr2L 12699931 exon CG17036 - chr2L_19_12695001 chr2L_12695001 RAL-332 259 chr2L 12731061 12731085 chr2L 12735828 12735848 F-element 4 4766 4.0 5.0 4.5 0.7 4787 chr2L 12731061 intron MRP + chr2L 12733454 intron MRP + chr2L 12735848 intron MRP + chr2L_4_12730001 chr2L_12730001 RAL-332 260 chr2L 12736669 12736706 chr2L 12736745 12736763 15 72 2.5 6.0 4.2 2.9 94 chr2L 12736669 intron MRP + chr2L 12736716 intron MRP + chr2L 12736763 intron MRP + chr2L_15_12735001 chr2L_12735001 RAL-332 261 chr2L 12739173 12739178 chr2L 12743954 12743959 Doc 5 4781 16.0 4.5 10.2 0.4 4786 chr2L 12739173 exon MRP + chr2L 12741566 intron MRP + chr2L 12743959 intron MRP + chr2L_5_12740001 chr2L_12740001 RAL-332 262 chr2L 12739179 12739206 chr2L 12743952 12743979 Doc 13 4776 7.5 4.5 6.0 1.9 4800 chr2L 12739179 exon MRP + chr2L 12741579 intron MRP + chr2L 12743979 exon MRP + chr2L_13_12740001 chr2L_12740001 RAL-332 263 chr2L 12751308 12751338 chr2L 12751391 12751421 21 81 3.5 5.5 4.5 3.8 113 chr2L 12751308 intergenic not near genes chr2L 12751364 intergenic not near genes chr2L 12751421 intergenic not near genes chr2L_21_12750001 chr2L_12750001 RAL-332 264 chr2L 12861695 12861727 chr2L 12863162 12863179 hobo 28 1461 6.5 5.0 5.8 4.1 1484 chr2L 12861695 intergenic not near genes chr2L 12862437 intergenic not near genes chr2L 12863179 intergenic not near genes chr2L_28_12860001 chr2L_12860001 RAL-332 265 chr2L 12933848 12933883 chr2L 12941315 12941350 blood 17 7465 5.5 6.0 5.8 2.5 7502 chr2L 12933848 intergenic not near genes chr2L 12937599 intergenic not near genes chr2L 12941350 intergenic not near genes chr2L_17_12935001 chr2L_12935001 RAL-332 266 chr2L 13069280 13069305 chr2L 13069392 13069425 11 115 0.0 1.0 0.5 7.3 145 chr2L 13069280 intergenic not near genes chr2L 13069352 intergenic not near genes chr2L 13069425 intergenic not near genes chr2L_11_13065001 chr2L_13065001 RAL-332 267 chr2L 13077570 13077595 chr2L 13078164 13078178 12 590 9.5 2.0 5.8 1.8 608 chr2L 13077570 intergenic not near genes chr2L 13077874 intergenic not near genes chr2L 13078178 intergenic not near genes chr2L_12_13075001 chr2L_13075001 RAL-332 268 chr2L 13109453 13109476 chr2L 13109579 13109604 5 124 1.5 6.0 3.8 1.0 151 chr2L 13109453 3` UTR CG5142 + chr2L 13109528 intergenic CG5142 + chr2L 13109604 intergenic CG5142 + chr2L_5_13105001 chr2L_13105001 RAL-332 269 chr2L 13122398 13122432 chr2L 13122510 13122519 12 101 4.5 2.0 3.2 2.9 121 chr2L 13122398 intergenic not near genes chr2L 13122458 intergenic not near genes chr2L 13122519 intergenic not near genes chr2L_12_13120001 chr2L_13120001 RAL-332 270 chr2L 13231898 13231913 chr2L 13231996 13232005 10 98 4.0 4.5 4.2 1.9 107 chr2L 13231898 intergenic Prosalpha6T + chr2L 13231952 intergenic Prosalpha6T + chr2L 13232005 intergenic Prosalpha6T + chr2L_10_13230001 chr2L_13230001 RAL-332 271 chr2L 13266387 13266398 chr2L 13266466 13266486 6 84 8.0 9.5 8.8 0.6 99 chr2L 13266387 intron CG44085 + chr2L 13266436 intron CG44085 + chr2L 13266486 intron CG44085 + chr2L_6_13265001 chr2L_13265001 RAL-332 272 chr2L 13266399 13266412 chr2L 13266465 13266484 11 77 4.0 9.0 6.5 1.5 85 chr2L 13266399 intron CG44085 + chr2L 13266442 intron CG44085 + chr2L 13266484 intron CG44085 + chr2L_11_13265001 chr2L_13265001 RAL-332 273 chr2L 13304030 13304063 chr2L 13304119 13304152 6 88 2.5 1.0 1.8 2.1 122 chr2L 13304030 3` UTR CG43778 - chr2L 13304091 3` UTR CG43778 - chr2L 13304152 3` UTR CG43778 - chr2L_6_13300001 chr2L_13300001 RAL-332 274 chr2L 13405648 13405683 chr2L 13410443 13410468 Doc 14 4791 2.5 4.0 3.2 3.3 4820 chr2L 13405648 exon CG7110 + chr2L 13408058 intron CG7110 + chr2L 13410468 intron CG7110 + chr2L_14_13405001 chr2L_13405001 RAL-332 275 chr2L 13449462 13449493 chr2L 13456896 13456929 Quasimodo 6 7428 4.0 1.5 2.8 1.6 7467 chr2L 13449462 intron,5` UTR CG42784 +,Hsp60D - chr2L 13453196 intron CG42784 + chr2L 13456929 intron CG42784 + chr2L_6_13450001 chr2L_13450001 RAL-332 276 chr2L 13481451 13481462 chr2L 13482058 13482069 jockey 5 607 7.5 5.5 6.5 0.7 618 chr2L 13481451 intron CG42784 + chr2L 13481760 intron CG42784 + chr2L 13482069 intron CG42784 + chr2L_5_13480001 chr2L_13480001 RAL-332 277 chr2L 13481464 13481476 chr2L 13482056 13482075 jockey 5 599 6.0 4.0 5.0 0.8 611 chr2L 13481464 intron CG42784 + chr2L 13481770 intron CG42784 + chr2L 13482075 intron CG42784 + chr2L_5_13480001 chr2L_13480001 RAL-332 278 chr2L 13517201 13517227 chr2L 13517289 13517300 10 82 9.0 10.5 9.8 0.9 99 chr2L 13517201 intron B4 - chr2L 13517250 intron B4 - chr2L 13517300 intron B4 - chr2L_10_13515001 chr2L_13515001 RAL-332 279 chr2L 13560400 13560419 chr2L 13565221 13565240 F-element 5 4821 1.0 1.5 1.2 2.3 4840 chr2L 13560400 intron kuz + chr2L 13562820 intron kuz + chr2L 13565240 intron kuz + chr2L_5_13560001 chr2L_13560001 RAL-332 280 chr2L 13617040 13617068 chr2L 13617134 13617162 15 91 5.0 5.0 5.0 2.5 122 chr2L 13617040 intron kuz + chr2L 13617101 intron kuz + chr2L 13617162 intron kuz + chr2L_15_13615001 chr2L_13615001 RAL-332 281 chr2L 13740077 13740095 chr2L 13740148 13740175 4 76 0.0 3.5 1.8 1.4 98 chr2L 13740077 intergenic not near genes chr2L 13740126 intergenic not near genes chr2L 13740175 intergenic not near genes chr2L_4_13740001 chr2L_13740001 RAL-332 282 chr2L 13761810 13761835 chr2L 13762919 13762946 Doc 7 1107 4.5 6.0 5.2 1.1 1136 chr2L 13761810 intron TM9SF4 + chr2L 13762378 intron TM9SF4 + chr2L 13762946 intron TM9SF4 + chr2L_7_13760001 chr2L_13760001 RAL-332 283 chr2L 13842153 13842165 chr2L 13842227 13842248 4 81 1.0 1.5 1.2 1.8 95 chr2L 13842153 intron CenG1A + chr2L 13842200 intron CenG1A + chr2L 13842248 intron CenG1A + chr2L_4_13840001 chr2L_13840001 RAL-332 284 chr2L 13853083 13853118 chr2L 13862233 13862259 roo 11 9143 5.5 3.5 4.5 2.0 9176 chr2L 13853083 intron CenG1A + chr2L 13857671 intron CenG1A + chr2L 13862259 intron CenG1A + chr2L_11_13855001 chr2L_13855001 RAL-332 285 chr2L 14010410 14010432 chr2L 14010484 14010497 12 70 0.0 2.5 1.2 5.5 87 chr2L 14010410 intergenic not near genes chr2L 14010454 intergenic not near genes chr2L 14010497 intergenic not near genes chr2L_12_14010001 chr2L_14010001 RAL-332 286 chr2L 14180067 14180090 chr2L 14180142 14180148 6 73 4.0 4.0 4.0 1.2 81 chr2L 14180067 intron CG43333 - chr2L 14180108 intron CG43333 - chr2L 14180148 intron CG43333 - chr2L_6_14180001 chr2L_14180001 RAL-332 287 chr2L 14222300 14222333 chr2L 14222387 14222419 16 86 2.0 4.5 3.2 3.8 119 chr2L 14222300 intron Dyrk2 - chr2L 14222360 intron Dyrk2 - chr2L 14222419 intron Dyrk2 - chr2L_16_14220001 chr2L_14220001 RAL-332 288 chr2L 14246292 14246314 chr2L 14246363 14246379 9 71 0.0 0.0 0.0 9.0 87 chr2L 14246292 intergenic not near genes chr2L 14246336 intergenic not near genes chr2L 14246379 intergenic not near genes chr2L_9_14245001 chr2L_14245001 RAL-332 289 chr2L 14524616 14524651 chr2L 14525114 14525146 9 492 1.5 3.0 2.2 2.8 530 chr2L 14524616 intron CG33648 + chr2L 14524881 intron CG33648 + chr2L 14525146 exon CG33648 + chr2L_9_14520001 chr2L_14520001 RAL-332 290 chr2L 14564198 14564211 chr2L 14564270 14564285 6 70 12.0 3.0 7.5 0.7 87 chr2L 14564198 intergenic CG3473 - chr2L 14564242 intergenic not near genes chr2L 14564285 intergenic not near genes chr2L_6_14560001 chr2L_14560001 RAL-332 291 chr2L 14564213 14564231 chr2L 14564269 14564307 13 63 5.0 2.5 3.8 2.7 94 chr2L 14564213 intergenic CG3473 - chr2L 14564260 intergenic not near genes chr2L 14564307 intergenic not near genes chr2L_13_14560001 chr2L_14560001 RAL-332 292 chr2L 14569665 14569688 chr2L 14569748 14569767 13 84 6.0 0.5 3.2 3.1 102 chr2L 14569665 intergenic not near genes chr2L 14569716 intergenic not near genes chr2L 14569767 intergenic not near genes chr2L_13_14565001 chr2L_14565001 RAL-332 293 chr2L 14588389 14588419 chr2L 14588536 14588558 16 149 3.5 4.5 4.0 3.2 169 chr2L 14588389 intergenic CG42680 - chr2L 14588474 intergenic CG42680 - chr2L 14588558 intergenic CG42680 - chr2L_16_14585001 chr2L_14585001 RAL-332 294 chr2L 14601980 14602003 chr2L 14602064 14602087 14 82 7.0 6.0 6.5 1.9 107 chr2L 14601980 exon osp - chr2L 14602034 intron osp - chr2L 14602087 intron osp - chr2L_14_14600001 chr2L_14600001 RAL-332 295 chr2L 14669804 14669841 chr2L 14669880 14669914 16 72 5.0 3.0 4.0 3.2 110 chr2L 14669804 intron osp - chr2L 14669859 intron osp - chr2L 14669914 intron osp - chr2L_16_14665001 chr2L_14665001 RAL-332 296 chr2L 14747768 14747781 chr2L 14747849 14747857 8 86 0.0 4.5 2.2 2.5 89 chr2L 14747768 intergenic not near genes chr2L 14747812 intergenic not near genes chr2L 14747857 intergenic not near genes chr2L_8_14745001 chr2L_14745001 RAL-332 297 chr2L 14803880 14803912 chr2L 14809083 14809115 copia 19 5197 4.0 9.5 6.8 2.4 5235 chr2L 14803880 intergenic not near genes chr2L 14806498 intergenic not near genes chr2L 14809115 intergenic not near genes chr2L_19_14805001 chr2L_14805001 RAL-332 298 chr2L 14831636 14831643 chr2L 14831762 14831780 4 130 3.0 4.5 3.8 0.8 144 chr2L 14831636 intergenic not near genes chr2L 14831708 intergenic not near genes chr2L 14831780 intergenic not near genes chr2L_4_14830001 chr2L_14830001 RAL-332 299 chr2L 14840980 14841009 chr2L 14841067 14841096 5 87 3.5 4.5 4.0 1.0 116 chr2L 14840980 3` UTR CR43805 - chr2L 14841038 3` UTR CR43805 - chr2L 14841096 3` UTR CR43805 - chr2L_5_14840001 chr2L_14840001 RAL-332 300 chr2L 14874912 14874933 chr2L 14874988 14874996 9 77 2.0 7.5 4.8 1.6 84 chr2L 14874912 3` UTR CG15278 - chr2L 14874954 3` UTR CG15278 - chr2L 14874996 3` UTR CG15278 - chr2L_9_14870001 chr2L_14870001 RAL-332 301 chr2L 14889957 14889986 chr2L 14890377 14890411 jockey 22 421 5.5 7.0 6.2 3.1 454 chr2L 14889957 intergenic not near genes chr2L 14890184 intergenic not near genes chr2L 14890411 intergenic not near genes chr2L_22_14890001 chr2L_14890001 RAL-332 302 chr2L 14984376 14984405 chr2L 14991977 14992006 opus 5 7601 4.5 3.0 3.8 1.0 7630 chr2L 14984376 intron mol - chr2L 14988191 intron mol - chr2L 14992006 intron mol - chr2L_5_14985001 chr2L_14985001 RAL-332 303 chr2L 15024110 15024124 chr2L 15024180 15024200 8 72 1.0 4.0 2.5 2.3 90 chr2L 15024110 intron GABA-B-R1 + chr2L 15024155 intron GABA-B-R1 + chr2L 15024200 intron GABA-B-R1 + chr2L_8_15020001 chr2L_15020001 RAL-332 304 chr2L 15044722 15044737 chr2L 15044788 15044813 6 71 1.0 0.0 0.5 4.0 91 chr2L 15044722 intergenic ck - chr2L 15044768 intergenic ck - chr2L 15044813 intergenic ck - chr2L_6_15040001 chr2L_15040001 RAL-332 305 chr2L 15078073 15078092 chr2L 15078161 15078177 8 87 1.5 2.5 2.0 2.7 104 chr2L 15078073 intron CG15270 + chr2L 15078125 intron CG15270 + chr2L 15078177 intron CG15270 + chr2L_8_15075001 chr2L_15075001 RAL-332 306 chr2L 15155815 15155848 chr2L 15155916 15155932 9 95 4.0 3.0 3.5 2.0 117 chr2L 15155815 intergenic not near genes chr2L 15155874 intergenic not near genes chr2L 15155932 intergenic not near genes chr2L_9_15155001 chr2L_15155001 RAL-332 307 chr2L 15161250 15161270 chr2L 15161386 15161388 5 131 2.5 3.0 2.8 1.3 138 chr2L 15161250 intergenic CR44770 + chr2L 15161319 intergenic CR44770 + chr2L 15161388 intergenic CR44770 +,CG4168 - chr2L_5_15160001 chr2L_15160001 RAL-332 308 chr2L 15226370 15226393 chr2L 15226443 15226463 6 74 4.0 2.0 3.0 1.5 93 chr2L 15226370 intergenic not near genes chr2L 15226416 intergenic not near genes chr2L 15226463 intergenic not near genes chr2L_6_15225001 chr2L_15225001 RAL-332 309 chr2L 15307976 15307983 chr2L 15308045 15308059 7 71 2.5 3.0 2.8 1.8 83 chr2L 15307976 intergenic not near genes chr2L 15308018 intergenic not near genes chr2L 15308059 intergenic not near genes chr2L_7_15305001 chr2L_15305001 RAL-332 310 chr2L 15403239 15403261 chr2L 15403317 15403329 5 73 4.0 0.0 2.0 1.7 90 chr2L 15403239 intergenic not near genes chr2L 15403284 intergenic not near genes chr2L 15403329 intergenic not near genes chr2L_5_15400001 chr2L_15400001 RAL-332 311 chr2L 15497407 15497417 chr2L 15497496 15497518 13 102 5.0 10.0 7.5 1.5 111 chr2L 15497407 intergenic not near genes chr2L 15497462 intergenic not near genes chr2L 15497518 intergenic not near genes chr2L_13_15495001 chr2L_15495001 RAL-332 312 chr2L 15556547 15556577 chr2L 15556651 15556681 4 101 0.5 1.5 1.0 2.0 134 chr2L 15556547 intron kek3 + chr2L 15556614 intron kek3 + chr2L 15556681 intron kek3 + chr2L_4_15555001 chr2L_15555001 RAL-332 313 chr2L 15574984 15575006 chr2L 15575394 15575416 12 406 3.5 6.0 4.8 2.1 432 chr2L 15574984 intron kek3 + chr2L 15575200 intron kek3 + chr2L 15575416 intron kek3 + chr2L_12_15575001 chr2L_15575001 RAL-332 314 chr2L 15586423 15586439 chr2L 15593461 15593491 297 4 7046 1.5 2.0 1.8 1.4 7068 chr2L 15586423 intergenic not near genes chr2L 15589957 intergenic not near genes chr2L 15593491 intergenic not near genes chr2L_4_15585001 chr2L_15585001 RAL-332 315 chr2L 15806774 15806796 chr2L 15806943 15806962 6 166 3.0 8.5 5.8 0.9 188 chr2L 15806774 intergenic CR44602 - chr2L 15806868 intergenic CR44602 - chr2L 15806962 intergenic CR44602 - chr2L_6_15805001 chr2L_15805001 RAL-332 316 chr2L 15906182 15906214 chr2L 15906270 15906303 11 83 1.5 4.5 3.0 2.8 121 chr2L 15906182 intron beat-Ib - chr2L 15906242 intron beat-Ib - chr2L 15906303 intron beat-Ib - chr2L_11_15905001 chr2L_15905001 RAL-332 317 chr2L 15933575 15933605 chr2L 15936110 15936143 17 2536 18.0 12.5 15.2 1.0 2568 chr2L 15933575 intron beat-Ib - chr2L 15934859 intron beat-Ib - chr2L 15936143 intron beat-Ib - chr2L_17_15930001 chr2L_15930001 RAL-332 318 chr2L 15933220 15933226 chr2L 15936125 15936150 8 2910 16.5 11.5 14.0 0.5 2930 chr2L 15933220 intron beat-Ib - chr2L 15934685 intron beat-Ib - chr2L 15936150 intron beat-Ib - chr2L_8_15930001 chr2L_15930001 RAL-332 319 chr2L 15947758 15947772 chr2L 15948367 15948387 8 616 4.0 4.0 4.0 1.6 629 chr2L 15947758 intron beat-Ib - chr2L 15948072 intron beat-Ib - chr2L 15948387 intron beat-Ib - chr2L_8_15945001 chr2L_15945001 RAL-332 320 chr2L 15956028 15956059 chr2L 15957495 15957511 hobo 8 1461 2.5 2.0 2.2 2.5 1483 chr2L 15956028 intron beat-Ib - chr2L 15956770 intron beat-Ib - chr2L 15957511 intron beat-Ib - chr2L_8_15955001 chr2L_15955001 RAL-332 321 chr2L 15960853 15960864 chr2L 15961170 15961181 4 317 21.0 2.5 11.8 0.3 328 chr2L 15960853 intron,5` UTR beat-Ib -,CR43803 + chr2L 15961017 intron,5` UTR beat-Ib -,CR43803 + chr2L 15961181 intron,5` UTR beat-Ib -,CR43803 + chr2L_4_15960001 chr2L_15960001 RAL-332 322 chr2L 15965717 15965743 chr2L 15965854 15965880 10 134 4.5 6.0 5.2 1.6 163 chr2L 15965717 intergenic not near genes chr2L 15965798 intergenic not near genes chr2L 15965880 intergenic not near genes chr2L_10_15965001 chr2L_15965001 RAL-332 323 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 28 145889 23.0 30.5 26.8 1.0 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_28_16140001 chr2L_16140001 RAL-332 324 chr2L 16141170 16141191 chr2L 16146376 16146398 copia 4 5204 3.0 4.5 3.8 0.8 5228 chr2L 16141170 intergenic not near genes chr2L 16143784 intergenic not near genes chr2L 16146398 intergenic not near genes chr2L_4_16140001 chr2L_16140001 RAL-332 325 chr2L 16161584 16161618 chr2L 16161736 16161770 12 151 4.0 1.0 2.5 3.4 186 chr2L 16161584 intergenic not near genes chr2L 16161677 intergenic not near genes chr2L 16161770 intergenic not near genes chr2L_12_16160001 chr2L_16160001 RAL-332 326 chr2L 9084336 9084340 chr2L 16217660 16217660 24 7133321 31.5 30.5 31.0 0.8 7133324 chr2L 9084336 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_24_12650001 chr2L_12650001 RAL-332 327 chr2L 16071770 16071771 chr2L 16217660 16217660 copia 29 145889 23.0 30.5 26.8 1.0 145890 chr2L 16071770 intron beat-Ia + chr2L 16144715 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_29_16140001 chr2L_16140001 RAL-332 328 chr2L 16280257 16280287 chr2L 16281427 16281448 1360 18 1164 4.0 8.5 6.2 2.5 1191 chr2L 16280257 intron crp - chr2L 16280852 intron crp - chr2L 16281448 intron crp - chr2L_18_16280001 chr2L_16280001 RAL-332 329 chr2L 16388916 16388926 chr2L 16388979 16389004 6 72 6.5 8.0 7.2 0.7 88 chr2L 16388916 intergenic not near genes chr2L 16388960 intergenic not near genes chr2L 16389004 intergenic not near genes chr2L_6_16385001 chr2L_16385001 RAL-332 330 chr2L 16432501 16432515 chr2L 16432586 16432601 5 86 5.5 2.0 3.8 1.0 100 chr2L 16432501 intron CG5888 - chr2L 16432551 intron CG5888 - chr2L 16432601 intron CG5888 - chr2L_5_16430001 chr2L_16430001 RAL-332 331 chr2L 16535245 16535282 chr2L 16535365 16535401 9 115 4.0 3.5 3.8 1.9 156 chr2L 16535245 intergenic CR45355 - chr2L 16535323 intergenic CR45355 - chr2L 16535401 intergenic CR45355 - chr2L_9_16535001 chr2L_16535001 RAL-332 332 chr2L 16595711 16595736 chr2L 16596035 16596045 8 320 5.0 1.5 3.2 1.9 334 chr2L 16595711 intron CG42389 + chr2L 16595878 intron CG42389 + chr2L 16596045 intron CG42389 + chr2L_8_16595001 chr2L_16595001 RAL-332 333 chr2L 16709090 16709100 chr2L 16709162 16709184 4 79 4.5 3.5 4.0 0.8 94 chr2L 16709090 intron CG31808 - chr2L 16709137 intron CG31808 - chr2L 16709184 intron CG31808 - chr2L_4_16705001 chr2L_16705001 RAL-332 334 chr2L 16716947 16716983 chr2L 16717064 16717094 11 109 3.5 2.0 2.8 2.9 147 chr2L 16716947 intron Cyt-c-d + chr2L 16717020 intron Cyt-c-d + chr2L 16717094 intron Cyt-c-d + chr2L_11_16715001 chr2L_16715001 RAL-332 335 chr2L 17000119 17000149 chr2L 17000239 17000247 10 112 2.5 3.5 3.0 2.5 128 chr2L 17000119 intergenic not near genes chr2L 17000183 intergenic not near genes chr2L 17000247 intergenic not near genes chr2L_10_17000001 chr2L_17000001 RAL-332 336 chr2L 17101900 17101915 chr2L 17101977 17101992 5 74 8.5 3.5 6.0 0.7 92 chr2L 17101900 intergenic not near genes chr2L 17101946 intergenic not near genes chr2L 17101992 intergenic not near genes chr2L_5_17100001 chr2L_17100001 RAL-332 337 chr2L 17103011 17103037 chr2L 17103096 17103125 6 82 0.5 5.0 2.8 1.6 114 chr2L 17103011 intergenic not near genes chr2L 17103068 intergenic not near genes chr2L 17103125 intergenic not near genes chr2L_6_17100001 chr2L_17100001 RAL-332 338 chr2L 17126352 17126356 chr2L 17126407 17126420 8 58 4.0 4.0 4.0 1.6 68 chr2L 17126352 intergenic CG31784 - chr2L 17126386 intergenic CG31784 - chr2L 17126420 intergenic CG31784 - chr2L_8_17125001 chr2L_17125001 RAL-332 339 chr2L 17168194 17168222 chr2L 17168972 17169000 4 778 0.5 1.5 1.0 2.0 806 chr2L 17168194 intron,intron CG34106 +,beat-IIIa + chr2L 17168597 intron,intron CG34106 +,beat-IIIa + chr2L 17169000 intron,intron CG34106 +,beat-IIIa + chr2L_4_17165001 chr2L_17165001 RAL-332 340 chr2L 17238832 17238864 chr2L 17238916 17238947 8 80 3.5 2.0 2.8 2.1 115 chr2L 17238832 intron beat-IIIc - chr2L 17238890 intron beat-IIIc - chr2L 17238947 intron beat-IIIc - chr2L_8_17235001 chr2L_17235001 RAL-332 341 chr2L 17240568 17240595 chr2L 17240654 17240682 4 86 3.0 5.0 4.0 0.8 114 chr2L 17240568 intron beat-IIIc - chr2L 17240625 intron beat-IIIc - chr2L 17240682 intron beat-IIIc - chr2L_4_17240001 chr2L_17240001 RAL-332 342 chr2L 17273196 17273231 chr2L 17277973 17278010 F-element 16 4776 2.5 6.0 4.2 3.1 4814 chr2L 17273196 intergenic not near genes chr2L 17275603 intergenic not near genes chr2L 17278010 intergenic not near genes chr2L_16_17275001 chr2L_17275001 RAL-332 343 chr2L 17327911 17327919 chr2L 17327997 17328003 5 85 9.5 13.5 11.5 0.4 92 chr2L 17327911 intergenic not near genes chr2L 17327957 intergenic not near genes chr2L 17328003 intergenic not near genes chr2L_5_17325001 chr2L_17325001 RAL-332 344 chr2L 17327921 17327926 chr2L 17327996 17328011 8 83 7.5 13.5 10.5 0.7 90 chr2L 17327921 intergenic not near genes chr2L 17327966 intergenic not near genes chr2L 17328011 intergenic not near genes chr2L_8_17325001 chr2L_17325001 RAL-332 345 chr2L 17383121 17383155 chr2L 17383197 17383216 11 70 3.0 1.5 2.2 3.4 95 chr2L 17383121 intron Lrch - chr2L 17383168 intron Lrch - chr2L 17383216 intron Lrch - chr2L_11_17380001 chr2L_17380001 RAL-332 346 chr2L 17386022 17386044 chr2L 17386085 17386123 9 72 3.0 0.0 1.5 3.6 101 chr2L 17386022 intron CLIP-190 + chr2L 17386072 intron CLIP-190 + chr2L 17386123 intron CLIP-190 + chr2L_9_17385001 chr2L_17385001 RAL-332 347 chr2L 17543608 17543625 chr2L 17543684 17543718 8 90 7.0 4.0 5.5 1.2 110 chr2L 17543608 intergenic not near genes chr2L 17543663 intergenic not near genes chr2L 17543718 intergenic not near genes chr2L_8_17540001 chr2L_17540001 RAL-332 348 chr2L 17549052 17549061 chr2L 17549277 17549286 7 225 11.5 11.0 11.2 0.6 234 chr2L 17549052 intergenic not near genes chr2L 17549169 intergenic not near genes chr2L 17549286 intergenic not near genes chr2L_7_17545001 chr2L_17545001 RAL-332 349 chr2L 17584103 17584123 chr2L 17584887 17584902 12 781 44.5 6.5 25.5 0.5 799 chr2L 17584103 5` UTR CR45111 + chr2L 17584502 intergenic CR45111 +,CR45112 - chr2L 17584902 3` UTR CR45112 - chr2L_12_17580001 chr2L_17580001 RAL-332 350 chr2L 17727868 17727882 chr2L 17729335 17729349 hobo 4 1467 2.0 9.0 5.5 0.6 1481 chr2L 17727868 intron CadN - chr2L 17728608 intron CadN - chr2L 17729349 intron CadN - chr2L_4_17725001 chr2L_17725001 RAL-332 351 chr2L 17880597 17880621 chr2L 17880709 17880733 8 108 1.0 3.5 2.2 2.5 136 chr2L 17880597 intergenic not near genes chr2L 17880665 intergenic not near genes chr2L 17880733 intergenic not near genes chr2L_8_17880001 chr2L_17880001 RAL-332 352 chr2L 17951956 17951980 chr2L 17953410 17953442 hobo 7 1456 1.5 1.0 1.2 3.2 1486 chr2L 17951956 intergenic CR44398 -,CR44397 - chr2L 17952699 intergenic not near genes chr2L 17953442 intergenic not near genes chr2L_7_17950001 chr2L_17950001 RAL-332 353 chr2L 17955875 17955895 chr2L 17955967 17955987 5 92 2.0 2.5 2.2 1.6 112 chr2L 17955875 intergenic not near genes chr2L 17955931 intergenic not near genes chr2L 17955987 intergenic not near genes chr2L_5_17955001 chr2L_17955001 RAL-332 354 chr2L 18051884 18051906 chr2L 18061027 18061031 roo 10 9142 8.0 3.5 5.8 1.5 9147 chr2L 18051884 intron rdo + chr2L 18056458 intron rdo + chr2L 18061031 intron rdo + chr2L_10_18055001 chr2L_18055001 RAL-332 355 chr2L 18111242 18111270 chr2L 18111333 18111352 9 88 4.0 5.5 4.8 1.6 110 chr2L 18111242 intergenic not near genes chr2L 18111297 intergenic not near genes chr2L 18111352 intergenic not near genes chr2L_9_18110001 chr2L_18110001 RAL-332 356 chr2L 18173911 18173939 chr2L 18173988 18174016 15 78 3.0 6.0 4.5 2.7 105 chr2L 18173911 intron CG42750 - chr2L 18173964 intron CG42750 - chr2L 18174016 intron CG42750 - chr2L_15_18170001 chr2L_18170001 RAL-332 357 chr2L 18201791 18201800 chr2L 18201883 18201892 6 92 13.0 5.0 9.0 0.6 101 chr2L 18201791 intron CG42750 - chr2L 18201842 intron CG42750 - chr2L 18201892 intron CG42750 - chr2L_6_18200001 chr2L_18200001 RAL-332 358 chr2L 18201805 18201817 chr2L 18201875 18201909 9 84 6.0 4.0 5.0 1.5 104 chr2L 18201805 intron CG42750 - chr2L 18201857 intron CG42750 - chr2L 18201909 intron CG42750 - chr2L_9_18200001 chr2L_18200001 RAL-332 359 chr2L 18230276 18230306 chr2L 18230360 18230389 11 81 9.5 7.0 8.2 1.2 113 chr2L 18230276 intron CG42750 - chr2L 18230332 intron CG42750 - chr2L 18230389 intron CG42750 - chr2L_11_18230001 chr2L_18230001 RAL-332 360 chr2L 18254540 18254569 chr2L 18254623 18254652 10 80 5.5 2.5 4.0 2.0 112 chr2L 18254540 intron CG42750 - chr2L 18254596 intron CG42750 - chr2L 18254652 intron CG42750 - chr2L_10_18250001 chr2L_18250001 RAL-332 361 chr2L 18264138 18264174 chr2L 18264226 18264246 10 84 2.5 0.0 1.2 4.5 108 chr2L 18264138 intron CG42750 - chr2L 18264192 intron CG42750 - chr2L 18264246 intron CG42750 - chr2L_10_18260001 chr2L_18260001 RAL-332 362 chr2L 18282319 18282341 chr2L 18282395 18282399 7 72 0.5 0.5 0.5 4.7 80 chr2L 18282319 intergenic not near genes chr2L 18282359 intergenic not near genes chr2L 18282399 intergenic not near genes chr2L_7_18280001 chr2L_18280001 RAL-332 363 chr2L 18291527 18291559 chr2L 18291625 18291657 4 92 0.5 1.0 0.8 2.2 130 chr2L 18291527 intergenic CG43362 -,CR44693 +,CR44696 - chr2L 18291592 intergenic CR44693 +,CG43362 -,CR44696 - chr2L 18291657 intergenic CR44693 +,CG43362 -,CR44696 - chr2L_4_18290001 chr2L_18290001 RAL-332 364 chr2L 18408023 18408056 chr2L 18412807 18412829 Doc 16 4779 5.0 2.5 3.8 3.3 4806 chr2L 18408023 intergenic not near genes chr2L 18410426 intergenic not near genes chr2L 18412829 intergenic not near genes chr2L_16_18410001 chr2L_18410001 RAL-332 365 chr2L 18561563 18561572 chr2L 18561664 18561673 4 100 2.0 4.0 3.0 1.0 110 chr2L 18561563 intron Pde11 - chr2L 18561618 intron Pde11 - chr2L 18561673 intron Pde11 - chr2L_4_18560001 chr2L_18560001 RAL-332 366 chr2L 18898414 18898428 chr2L 18898477 18898505 5 73 5.0 1.0 3.0 1.2 91 chr2L 18898414 intergenic not near genes chr2L 18898460 intergenic not near genes chr2L 18898505 intergenic not near genes chr2L_5_18895001 chr2L_18895001 RAL-332 367 chr2L 19016249 19016273 chr2L 19016344 19016369 4 94 1.0 1.5 1.2 1.8 120 chr2L 19016249 intergenic not near genes chr2L 19016309 intergenic not near genes chr2L 19016369 intergenic not near genes chr2L_4_19015001 chr2L_19015001 RAL-332 368 chr2L 19024096 19024097 chr2L 21768291 21768294 17 2744195 15.0 26.5 20.8 0.8 2744198 chr2L 19024096 3` UTR CR43700 - chr2L 20396195 intron CG10947 - chr2L 21768294 intron CG31612 - chr2L_17_20395001 chr2L_20395001 RAL-332 369 chr2L 19035935 19035943 chr2L 19036008 19036033 5 82 8.0 3.0 5.5 0.8 98 chr2L 19035935 intron mib2 + chr2L 19035984 intron mib2 + chr2L 19036033 intron mib2 + chr2L_5_19035001 chr2L_19035001 RAL-332 370 chr2L 19043303 19043333 chr2L 19043391 19043405 9 83 2.5 5.0 3.8 1.9 102 chr2L 19043303 exon Catsup + chr2L 19043354 3` UTR Catsup + chr2L 19043405 3` UTR Catsup + chr2L_9_19040001 chr2L_19040001 RAL-332 371 chr2L 19121042 19121050 chr2L 19121120 19121127 5 76 8.5 1.5 5.0 0.8 85 chr2L 19121042 intergenic l(2)37Cc - chr2L 19121084 intergenic l(2)37Cc - chr2L 19121127 intergenic l(2)37Cc - chr2L_5_19120001 chr2L_19120001 RAL-332 372 chr2L 19121051 19121071 chr2L 19121117 19121149 13 71 3.5 1.5 2.5 3.7 98 chr2L 19121051 intergenic l(2)37Cc - chr2L 19121100 intergenic l(2)37Cc - chr2L 19121149 intergenic l(2)37Cc - chr2L_13_19120001 chr2L_19120001 RAL-332 373 chr2L 19147371 19147375 chr2L 19154406 19154410 297 5 7034 11.0 4.5 7.8 0.6 7039 chr2L 19147371 intron brat + chr2L 19150890 intron brat + chr2L 19154410 intron brat + chr2L_5_19150001 chr2L_19150001 RAL-332 374 chr2L 19147378 19147403 chr2L 19154405 19154436 297 8 7028 1.5 4.5 3.0 2.0 7058 chr2L 19147378 intron brat + chr2L 19150907 intron brat + chr2L 19154436 intron brat + chr2L_8_19150001 chr2L_19150001 RAL-332 375 chr2L 19192783 19192810 chr2L 19192864 19192896 10 84 3.5 5.5 4.5 1.8 113 chr2L 19192783 intron drl + chr2L 19192840 intron drl + chr2L 19192896 intron drl + chr2L_10_19190001 chr2L_19190001 RAL-332 376 chr2L 19345013 19345043 chr2L 19357221 19357250 blood 17 12204 4.0 2.0 3.0 4.2 12237 chr2L 19345013 intron dnt - chr2L 19351132 intron dnt - chr2L 19357250 intron dnt - chr2L_17_19350001 chr2L_19350001 RAL-332 377 chr2L 19357547 19357556 chr2L 19357637 19357646 7 89 6.0 8.0 7.0 0.9 99 chr2L 19357547 intron dnt - chr2L 19357596 intron dnt - chr2L 19357646 intron dnt - chr2L_7_19355001 chr2L_19355001 RAL-332 378 chr2L 19357558 19357567 chr2L 19357636 19357657 4 80 3.5 8.0 5.8 0.6 99 chr2L 19357558 intron dnt - chr2L 19357608 intron dnt - chr2L 19357657 intron dnt - chr2L_4_19355001 chr2L_19355001 RAL-332 379 chr2L 19374492 19374516 chr2L 19374601 19374611 4 104 3.0 1.5 2.2 1.2 119 chr2L 19374492 intergenic not near genes chr2L 19374552 intergenic not near genes chr2L 19374611 intergenic not near genes chr2L_4_19370001 chr2L_19370001 RAL-332 380 chr2L 19377085 19377106 chr2L 19377149 19377183 13 71 2.5 3.5 3.0 3.2 98 chr2L 19377085 intergenic not near genes chr2L 19377134 intergenic not near genes chr2L 19377183 intergenic not near genes chr2L_13_19375001 chr2L_19375001 RAL-332 381 chr2L 19543129 19543159 chr2L 19543213 19543228 9 81 4.5 6.5 5.5 1.4 99 chr2L 19543129 intron ref(2)P + chr2L 19543178 intron ref(2)P + chr2L 19543228 intron ref(2)P + chr2L_9_19540001 chr2L_19540001 RAL-332 382 chr2L 19559182 19559214 chr2L 19559269 19559294 18 84 3.5 7.5 5.5 2.8 112 chr2L 19559182 exon Tep5 + chr2L 19559238 exon Tep5 + chr2L 19559294 exon Tep5 + chr2L_18_19555001 chr2L_19555001 RAL-332 383 chr2L 19560005 19560038 chr2L 19560258 19560290 9 247 1.0 8.5 4.8 1.6 285 chr2L 19560005 exon Tep5 + chr2L 19560148 exon Tep5 + chr2L 19560290 intron Tep5 + chr2L_9_19560001 chr2L_19560001 RAL-332 384 chr2L 19562528 19562562 chr2L 19562608 19562642 16 77 7.5 4.5 6.0 2.3 114 chr2L 19562528 exon Tep5 + chr2L 19562585 intron Tep5 + chr2L 19562642 exon Tep5 + chr2L_16_19560001 chr2L_19560001 RAL-332 385 chr2L 19620110 19620132 chr2L 19621083 19621121 jockey 16 981 4.0 7.5 5.8 2.4 1011 chr2L 19620110 intron Lar + chr2L 19620616 intron Lar + chr2L 19621121 intron Lar + chr2L_16_19620001 chr2L_19620001 RAL-332 386 chr2L 19703535 19703568 chr2L 19712671 19712695 roo 8 9133 6.0 3.5 4.8 1.4 9160 chr2L 19703535 intron Lar + chr2L 19708115 intron Lar + chr2L 19712695 intron Lar + chr2L_8_19705001 chr2L_19705001 RAL-332 387 chr2L 19762811 19762835 chr2L 19763050 19763077 pogo 5 240 4.5 4.5 4.5 0.9 266 chr2L 19762811 5` UTR fbp - chr2L 19762944 intron fbp - chr2L 19763077 intron fbp - chr2L_5_19760001 chr2L_19760001 RAL-332 388 chr2L 19837276 19837308 chr2L 19837356 19837365 20 76 6.0 8.5 7.2 2.4 89 chr2L 19837276 intron sick + chr2L 19837320 intron sick + chr2L 19837365 intron sick + chr2L_20_19835001 chr2L_19835001 RAL-332 389 chr2L 19846245 19846276 chr2L 19846326 19846357 17 78 0.0 5.0 2.5 4.9 112 chr2L 19846245 intron sick + chr2L 19846301 intron sick + chr2L 19846357 intron sick + chr2L_17_19845001 chr2L_19845001 RAL-332 390 chr2L 19901490 19901520 chr2L 19901591 19901623 13 100 3.0 3.5 3.2 3.1 133 chr2L 19901490 intron sick + chr2L 19901556 intron sick + chr2L 19901623 intron sick + chr2L_13_19900001 chr2L_19900001 RAL-332 391 chr2L 19911289 19911325 chr2L 19911377 19911403 19 84 5.0 6.0 5.5 2.9 114 chr2L 19911289 intron,3` UTR sick +,CR43097 - chr2L 19911346 intron,3` UTR sick +,CR43097 - chr2L 19911403 intron,3` UTR sick +,CR43097 - chr2L_19_19910001 chr2L_19910001 RAL-332 392 chr2L 19994664 19994680 chr2L 19994729 19994737 6 68 4.5 2.5 3.5 1.3 73 chr2L 19994664 intron CG43861 - chr2L 19994700 intron CG43861 - chr2L 19994737 intron CG43861 - chr2L_6_19990001 chr2L_19990001 RAL-332 393 chr2L 19994681 19994687 chr2L 19994728 19994765 6 62 4.0 2.0 3.0 1.5 84 chr2L 19994681 intron CG43861 - chr2L 19994723 intron CG43861 - chr2L 19994765 intron CG43861 - chr2L_6_19990001 chr2L_19990001 RAL-332 394 chr2L 20005874 20005901 chr2L 20010950 20010977 flea 8 5072 3.0 2.5 2.8 2.1 5103 chr2L 20005874 intron CG43861 - chr2L 20008426 intron CG43861 - chr2L 20010977 intron CG43861 - chr2L_8_20005001 chr2L_20005001 RAL-332 395 chr2L 20229294 20229322 chr2L 20229413 20229446 8 119 2.5 2.0 2.2 2.5 152 chr2L 20229294 intergenic not near genes chr2L 20229370 intergenic not near genes chr2L 20229446 intergenic not near genes chr2L_8_20225001 chr2L_20225001 RAL-332 396 chr2L 20272111 20272140 chr2L 20282821 20282847 copia 4 10705 4.0 2.5 3.2 1.0 10736 chr2L 20272111 intergenic not near genes chr2L 20277479 intergenic not near genes chr2L 20282847 intergenic not near genes chr2L_4_20275001 chr2L_20275001 RAL-332 397 chr2L 20296508 20296535 chr2L 20296589 20296616 9 76 4.0 2.5 3.2 2.1 108 chr2L 20296508 intergenic CR43414 - chr2L 20296562 intergenic CR43414 - chr2L 20296616 intergenic CR43414 - chr2L_9_20295001 chr2L_20295001 RAL-332 398 chr2L 20298838 20298854 chr2L 20298912 20298921 17 76 2.0 7.5 4.8 2.9 83 chr2L 20298838 intergenic not near genes chr2L 20298880 intergenic not near genes chr2L 20298921 intergenic not near genes chr2L_17_20295001 chr2L_20295001 RAL-332 399 chr2L 20303178 20303190 chr2L 20310639 20310648 blood 5 7465 2.5 2.0 2.2 1.6 7470 chr2L 20303178 intergenic not near genes chr2L 20306913 intergenic not near genes chr2L 20310648 intergenic not near genes chr2L_5_20305001 chr2L_20305001 RAL-332 400 chr2L 20310881 20310917 chr2L 20310961 20310996 6 76 0.0 6.0 3.0 1.5 115 chr2L 20310881 intergenic spir + chr2L 20310938 intergenic spir + chr2L 20310996 intergenic spir + chr2L_6_20310001 chr2L_20310001 RAL-332 401 chr2L 20474422 20474435 chr2L 20474842 20474846 5 417 4.0 4.5 4.2 1.0 424 chr2L 20474422 intron CR44980 - chr2L 20474634 intron CR44980 - chr2L 20474846 intron CR44980 - chr2L_5_20470001 chr2L_20470001 RAL-332 402 chr2L 20498694 20498705 chr2L 20498793 20498796 5 97 6.0 5.5 5.8 0.7 102 chr2L 20498694 intergenic not near genes chr2L 20498745 intergenic not near genes chr2L 20498796 intergenic not near genes chr2L_5_20495001 chr2L_20495001 RAL-332 403 chr2L 20553188 20553220 chr2L 20553264 20553296 11 72 5.0 3.5 4.2 2.1 108 chr2L 20553188 intergenic not near genes chr2L 20553242 intergenic not near genes chr2L 20553296 intergenic not near genes chr2L_11_20550001 chr2L_20550001 RAL-332 404 chr2L 20568663 20568678 chr2L 20569053 20569068 X-element 6 388 4.0 3.0 3.5 1.3 405 chr2L 20568663 intron CR45347 + chr2L 20568866 intron CR45347 + chr2L 20569068 intron CR45347 + chr2L_6_20565001 chr2L_20565001 RAL-332 405 chr2L 20572973 20572995 chr2L 20573048 20573080 11 81 3.5 4.0 3.8 2.3 107 chr2L 20572973 intron CR45347 + chr2L 20573026 intron CR45347 + chr2L 20573080 intron CR45347 + chr2L_11_20570001 chr2L_20570001 RAL-332 406 chr2L 20576218 20576252 chr2L 20583685 20583714 blood 18 7463 4.0 2.0 3.0 4.5 7496 chr2L 20576218 intergenic CR45347 + chr2L 20579966 intergenic not near genes chr2L 20583714 3` UTR CR44909 - chr2L_18_20575001 chr2L_20575001 RAL-332 407 chr2L 20589498 20589524 chr2L 20589575 20589601 10 74 2.5 8.0 5.2 1.6 103 chr2L 20589498 intron CR44909 - chr2L 20589550 intron CR44909 - chr2L 20589601 intron CR44909 - chr2L_10_20585001 chr2L_20585001 RAL-332 408 chr2L 20597086 20597120 chr2L 20597163 20597197 11 71 4.0 10.5 7.2 1.3 111 chr2L 20597086 intron CR44909 - chr2L 20597142 intron CR44909 - chr2L 20597197 intron CR44909 - chr2L_11_20595001 chr2L_20595001 RAL-332 409 chr2L 20607640 20607669 chr2L 20607719 20607721 9 71 6.0 6.0 6.0 1.3 81 chr2L 20607640 intron,3` UTR CR44909 -,CR43608 - chr2L 20607680 intron,3` UTR CR44909 -,CR43608 - chr2L 20607721 intron,3` UTR CR44909 -,CR43608 - chr2L_9_20605001 chr2L_20605001 RAL-332 410 chr2L 20695799 20695828 chr2L 20695884 20695914 7 85 2.0 5.0 3.5 1.6 115 chr2L 20695799 intron Hr38 - chr2L 20695856 intron Hr38 - chr2L 20695914 intron Hr38 - chr2L_7_20695001 chr2L_20695001 RAL-332 411 chr2L 20804705 20804732 chr2L 20804790 20804806 19 80 4.0 2.5 3.2 4.5 101 chr2L 20804705 intron CG9328 + chr2L 20804756 intron CG9328 + chr2L 20804806 intron CG9328 + chr2L_19_20800001 chr2L_20800001 RAL-332 412 chr2L 10476055 10476072 chr2L 20875591 20875593 7 10399523 23.5 26.0 24.8 0.3 10399538 chr2L 10476055 intergenic not near genes chr2L 15675824 intron,exon,exon CG4587 -,CG43923 -,CG43924 - chr2L 20875593 intron,intron CG43739 -,sky - chr2L_7_15675001 chr2L_15675001 RAL-332 413 chr2L 20901473 20901487 chr2L 20902620 20902634 1360 6 1150 1.0 1.5 1.2 2.7 1161 chr2L 20901473 intron,intron CG43739 -,sky - chr2L 20902054 intron,intron CG43739 -,sky - chr2L 20902634 intron,intron CG43739 -,sky - chr2L_6_20900001 chr2L_20900001 RAL-332 414 chr2L 20967930 20967960 chr2L 20968022 20968053 14 89 2.5 5.0 3.8 2.9 123 chr2L 20967930 intron CG42238 - chr2L 20967992 intron CG42238 - chr2L 20968053 intron CG42238 - chr2L_14_20965001 chr2L_20965001 RAL-332 415 chr2L 20976643 20976681 chr2L 20981454 20981496 X-element 16 4810 1.5 3.0 2.2 5.0 4853 chr2L 20976643 intron CG42238 - chr2L 20979070 intron CG42238 - chr2L 20981496 intron CG42238 - chr2L_16_20975001 chr2L_20975001 RAL-332 416 chr2L 20984611 20984613 chr2L 20984691 20984694 4 81 11.0 6.0 8.5 0.4 83 chr2L 20984611 intron CG42238 - chr2L 20984652 intron CG42238 - chr2L 20984694 intron CG42238 - chr2L_4_20980001 chr2L_20980001 RAL-332 417 chr2L 20984615 20984639 chr2L 20984686 20984706 12 74 3.5 4.5 4.0 2.4 91 chr2L 20984615 intron CG42238 - chr2L 20984660 intron CG42238 - chr2L 20984706 intron CG42238 - chr2L_12_20980001 chr2L_20980001 RAL-332 418 chr2L 21020274 21020282 chr2L 21023951 21023956 NOF 4 3675 10.5 9.5 10.0 0.4 3682 chr2L 21020274 intron CG42238 - chr2L 21022115 intron CG42238 - chr2L 21023956 intron CG42238 - chr2L_4_21020001 chr2L_21020001 RAL-332 419 chr2L 21020287 21020310 chr2L 21023948 21023986 NOF 10 3670 6.0 8.0 7.0 1.2 3699 chr2L 21020287 intron CG42238 - chr2L 21022136 intron CG42238 - chr2L 21023986 intron CG42238 - chr2L_10_21020001 chr2L_21020001 RAL-332 420 chr2L 21041138 21041168 chr2L 21049394 21049429 Tirant 13 8257 3.0 3.0 3.0 3.2 8291 chr2L 21041138 intron CG42238 - chr2L 21045284 intron CG42238 - chr2L 21049429 intron CG42238 - chr2L_13_21045001 chr2L_21045001 RAL-332 421 chr2L 21196183 21196188 chr2L 21196299 21196314 5 122 4.0 3.0 3.5 1.1 131 chr2L 21196183 intron Ret - chr2L 21196248 intron Ret - chr2L 21196314 intron Ret - chr2L_5_21195001 chr2L_21195001 RAL-332 422 chr2L 21286606 21286617 chr2L 21286684 21286691 5 77 4.5 2.5 3.5 1.1 85 chr2L 21286606 exon Mio - chr2L 21286648 intron Mio - chr2L 21286691 intron Mio - chr2L_5_21285001 chr2L_21285001 RAL-332 423 chr2L 21286618 21286627 chr2L 21286683 21286704 4 73 4.0 2.5 3.2 1.0 86 chr2L 21286618 exon Mio - chr2L 21286661 intron Mio - chr2L 21286704 intron Mio - chr2L_4_21285001 chr2L_21285001 RAL-332 424 chr2L 21377406 21377431 chr2L 21377477 21377493 8 68 3.0 1.5 2.2 2.5 87 chr2L 21377406 3` UTR CG8665 + chr2L 21377450 3` UTR CG8665 + chr2L 21377493 3` UTR CG8665 + chr2L_8_21375001 chr2L_21375001 RAL-332 425 chr2L 21387249 21387276 chr2L 21387696 21387717 8 444 4.0 1.5 2.8 2.1 468 chr2L 21387249 intron nrv3 + chr2L 21387483 intron nrv3 + chr2L 21387717 intron nrv3 + chr2L_8_21385001 chr2L_21385001 RAL-332 426 chr2L 21396598 21396606 chr2L 21396833 21396840 4 234 3.5 4.0 3.8 0.8 242 chr2L 21396598 intergenic not near genes chr2L 21396719 intergenic not near genes chr2L 21396840 intergenic not near genes chr2L_4_21395001 chr2L_21395001 RAL-332 427 chr2L 21712162 21712177 chr2L 21712225 21712256 9 73 3.0 3.0 3.0 2.2 94 chr2L 21712162 intron CG31619 + chr2L 21712209 intron CG31619 + chr2L 21712256 intron CG31619 + chr2L_9_21710001 chr2L_21710001 RAL-332 428 chr2L 21755494 21755523 chr2L 21755617 21755647 11 120 4.0 3.0 3.5 2.4 153 chr2L 21755494 intron step - chr2L 21755570 intron step - chr2L 21755647 intron step - chr2L_11_21755001 chr2L_21755001 RAL-332 429 chr2L 21819007 21819028 chr2L 21819102 21819123 8 92 6.5 5.0 5.8 1.2 116 chr2L 21819007 intergenic CR44786 + chr2L 21819065 intergenic CR44786 + chr2L 21819123 intergenic CR44786 + chr2L_8_21815001 chr2L_21815001 RAL-332 430 chr2L 21855488 21855513 chr2L 21855561 21855600 6 81 3.0 1.0 2.0 2.0 112 chr2L 21855488 intron CR44917 + chr2L 21855544 intron CR44917 + chr2L 21855600 intron CR44917 + chr2L_6_21855001 chr2L_21855001 RAL-332 431 chr2L 21954283 21954315 chr2L 21954436 21954468 4 149 1.0 3.0 2.0 1.3 185 chr2L 21954283 intergenic not near genes chr2L 21954376 intergenic not near genes chr2L 21954468 intergenic not near genes chr2L_4_21950001 chr2L_21950001 RAL-332 432 chr2L 21981686 21981693 chr2L 21990851 21990851 roo 4 9163 7.5 9.0 8.2 0.4 9165 chr2L 21981686 exon CG2528 - chr2L 21986268 intron CG2528 - chr2L 21990851 exon CG2528 - chr2L_4_21985001 chr2L_21985001 RAL-332 433 chr2L 21981694 21981715 chr2L 21990849 21990863 roo 14 9162 2.5 9.0 5.8 2.1 9169 chr2L 21981694 exon CG2528 - chr2L 21986278 intron CG2528 - chr2L 21990863 exon CG2528 - chr2L_14_21985001 chr2L_21985001 RAL-332 434 chr2L 22011925 22011944 chr2L 22011998 22012025 14 75 4.5 5.0 4.8 2.4 100 chr2L 22011925 intergenic not near genes chr2L 22011975 intergenic not near genes chr2L 22012025 intergenic not near genes chr2L_14_22010001 chr2L_22010001 RAL-332 435 chr2L 22192046 22192057 chr2L 22192130 22192145 5 86 2.0 5.0 3.5 1.1 99 chr2L 22192046 intron Ir40a - chr2L 22192096 intron Ir40a - chr2L 22192145 intron Ir40a - chr2L_5_22190001 chr2L_22190001 RAL-332 436 chr2L 22325303 22325335 chr2L 22325379 22325401 15 73 6.0 5.0 5.5 2.3 98 chr2L 22325303 intron CG17018 + chr2L 22325352 intron CG17018 + chr2L 22325401 intron CG17018 + chr2L_15_22325001 chr2L_22325001 RAL-332 437 chr2L 22534599 22534631 chr2L 22534700 22534732 14 96 1.0 3.5 2.2 4.4 133 chr2L 22534599 3` UTR RpL5 - chr2L 22534666 3` UTR RpL5 - chr2L 22534732 3` UTR RpL5 - chr2L_14_22530001 chr2L_22530001 RAL-332 438 chr2L 22548561 22548575 chr2L 22548641 22548664 4 85 3.5 1.0 2.2 1.2 103 chr2L 22548561 intergenic CG17490 + chr2L 22548612 intergenic CG17490 + chr2L 22548664 intergenic CG17490 + chr2L_4_22545001 chr2L_22545001 RAL-332 439 chr2L 22548922 22548945 chr2L 22550146 22550170 1360 6 1225 0.0 6.0 3.0 1.5 1248 chr2L 22548922 intergenic CG17490 + chr2L 22549546 intergenic not near genes chr2L 22550170 intergenic CG17493 + chr2L_6_22545001 chr2L_22545001 RAL-332 440 chr2L 22631232 22631258 chr2L 22631322 22631342 12 87 19.0 24.5 21.8 0.5 110 chr2L 22631232 intron CG40006 - chr2L 22631287 intron CG40006 - chr2L 22631342 intron CG40006 - chr2L_12_22630001 chr2L_22630001 RAL-332 441 chr2L 22679806 22679830 chr2L 22684564 22684591 F-element 22 4765 5.0 10.5 7.8 2.5 4785 chr2L 22679806 intron CG40006 - chr2L 22682198 intron CG40006 - chr2L 22684591 intron CG40006 - chr2L_22_22680001 chr2L_22680001 RAL-332 442 chr2L 22695048 22695078 chr2L 22695130 22695162 7 82 20.5 19.5 20.0 0.3 114 chr2L 22695048 intron CG40006 - chr2L 22695105 intron CG40006 - chr2L 22695162 intron CG40006 - chr2L_7_22695001 chr2L_22695001 RAL-332 443 chr2L 22696385 22696399 chr2L 22700847 22700877 6 4466 37.0 52.5 44.8 0.1 4492 chr2L 22696385 intron CG40006 - chr2L 22698631 intron CG40006 - chr2L 22700877 intron CG40006 - chr2L_6_22695001 chr2L_22695001 RAL-332 444 chr2L 22968565 22968574 chr2L 22968659 22968659 7 92 9.5 7.5 8.5 0.7 94 chr2L 22968565 intergenic not near genes chr2L 22968612 intergenic not near genes chr2L 22968659 intergenic not near genes chr2L_7_22965001 chr2L_22965001 RAL-332 445 chr2L 22968578 22968588 chr2L 22968655 22968682 5 87 7.5 6.5 7.0 0.6 104 chr2L 22968578 intergenic not near genes chr2L 22968630 intergenic not near genes chr2L 22968682 intergenic not near genes chr2L_5_22965001 chr2L_22965001 RAL-332 446 chr2L 22983941 22983969 chr2L 22984017 22984028 6 71 3.5 3.5 3.5 1.3 87 chr2L 22983941 intron cta + chr2L 22983984 intron cta + chr2L 22984028 intron cta + chr2L_6_22980001 chr2L_22980001 RAL-332 447 chr2R 529322 529354 chr2R 537946 537979 Max-element 9 8619 2.5 5.0 3.8 1.9 8657 chr2R 529322 intron CG40378 + chr2R 533650 intron CG40378 + chr2R 537979 intron CG40378 + chr2R_9_530001 chr2R_530001 RAL-332 448 chr2R 552752 552787 chr2R 553969 553999 1360 14 1209 3.0 3.5 3.2 3.3 1247 chr2R 552752 intron CG40378 + chr2R 553376 intron CG40378 + chr2R 553999 intron CG40378 + chr2R_14_550001 chr2R_550001 RAL-332 449 chr2R 1090275 1090304 chr2R 1090369 1090380 9 87 5.0 6.0 5.5 1.4 105 chr2R 1090275 intron rl + chr2R 1090328 intron rl + chr2R 1090380 intron rl + chr2R_9_1090001 chr2R_1090001 RAL-332 450 chr2R 1317841 1317861 chr2R 1318150 1318165 6 306 36.0 43.5 39.8 0.1 324 chr2R 1317841 intergenic not near genes chr2R 1318003 intergenic not near genes chr2R 1318165 intergenic not near genes chr2R_6_1315001 chr2R_1315001 RAL-332 451 chr2R 1365864 1365877 chr2R 1365976 1365984 6 110 8.0 3.0 5.5 0.9 120 chr2R 1365864 intron l(2)41Ab + chr2R 1365924 intron l(2)41Ab + chr2R 1365984 intron l(2)41Ab + chr2R_6_1365001 chr2R_1365001 RAL-332 452 chr2R 1365878 1365895 chr2R 1365974 1365987 8 102 7.0 3.0 5.0 1.3 109 chr2R 1365878 intron l(2)41Ab + chr2R 1365932 intron l(2)41Ab + chr2R 1365987 intron l(2)41Ab + chr2R_8_1365001 chr2R_1365001 RAL-332 453 chr2R 2015131 2015165 chr2R 2015208 2015231 7 70 0.5 1.5 1.0 3.5 100 chr2R 2015131 intron CG17684 - chr2R 2015181 intron CG17684 - chr2R 2015231 intron CG17684 - chr2R_7_2015001 chr2R_2015001 RAL-332 454 chr2R 2508324 2508339 chr2R 2508454 2508477 9 131 1.0 5.5 3.2 2.1 153 chr2R 2508324 intron MFS17 - chr2R 2508400 intron MFS17 - chr2R 2508477 intron MFS17 - chr2R_9_2505001 chr2R_2505001 RAL-332 455 chr2R 3291928 3292103 chr2R 3915097 3915262 5 623162 16.5 23.5 20.0 0.2 623334 chr2R 3291928 intergenic not near genes chr2R 3603595 intergenic not near genes chr2R 3915262 intron uex - chr2R_5_3600001 chr2R_3600001 RAL-332 456 chr2R 3818932 3818957 chr2R 3819048 3819059 13 111 20.5 6.0 13.2 0.9 127 chr2R 3818932 intergenic not near genes chr2R 3818996 intergenic not near genes chr2R 3819059 intergenic not near genes chr2R_13_3815001 chr2R_3815001 RAL-332 457 chr2R 4312952 4313126 chr2R 4313036 4313209 12 86 4.5 2.5 3.5 2.7 257 chr2R 4312952 intergenic not near genes chr2R 4313080 intergenic not near genes chr2R 4313209 intergenic not near genes chr2R_12_4310001 chr2R_4310001 RAL-332 458 chr2R 4621322 4621346 chr2R 4621862 4621886 10 538 2.5 7.5 5.0 1.7 564 chr2R 4621322 3` UTR CR44101 - chr2R 4621604 3` UTR CR44101 - chr2R 4621886 3` UTR CR44101 - chr2R_10_4620001 chr2R_4620001 RAL-332 459 chr2R 4622970 4622988 chr2R 4624110 4624147 1360 11 1153 7.0 6.5 6.8 1.4 1177 chr2R 4622970 intergenic CR44101 - chr2R 4623558 intergenic not near genes chr2R 4624147 intergenic not near genes chr2R_11_4620001 chr2R_4620001 RAL-332 460 chr2R 4838886 4838896 chr2R 4840393 4840398 transib2 7 1517 7.0 4.0 5.5 1.1 1512 chr2R 4838886 intergenic not near genes chr2R 4839642 intergenic not near genes chr2R 4840398 intergenic not near genes chr2R_7_4835001 chr2R_4835001 RAL-332 461 chr2R 4955036 4955069 chr2R 4955388 4955422 9 345 3.0 1.0 2.0 3.0 386 chr2R 4955036 intron Ir41a + chr2R 4955229 intron Ir41a + chr2R 4955422 intron Ir41a + chr2R_9_4955001 chr2R_4955001 RAL-332 462 chr2R 4957022 4957046 chr2R 4957117 4957149 6 100 2.5 2.5 2.5 1.7 127 chr2R 4957022 intron Ir41a + chr2R 4957086 intron Ir41a + chr2R 4957149 intron Ir41a + chr2R_6_4955001 chr2R_4955001 RAL-332 463 chr2R 5103059 5103066 chr2R 5103139 5103141 5 80 10.5 6.0 8.2 0.5 82 chr2R 5103059 intergenic not near genes chr2R 5103100 intergenic not near genes chr2R 5103141 intergenic not near genes chr2R_5_5100001 chr2R_5100001 RAL-332 464 chr2R 5103068 5103076 chr2R 5103134 5103150 13 74 7.0 4.5 5.8 1.9 82 chr2R 5103068 intergenic not near genes chr2R 5103109 intergenic not near genes chr2R 5103150 intergenic not near genes chr2R_13_5100001 chr2R_5100001 RAL-332 465 chr2R 5238203 5238220 chr2R 5238304 5238333 14 116 5.5 5.5 5.5 2.2 130 chr2R 5238203 intron Nipped-A - chr2R 5238268 exon Nipped-A - chr2R 5238333 exon Nipped-A - chr2R_14_5235001 chr2R_5235001 RAL-332 466 chr2R 5266126 5266151 chr2R 5266200 5266217 12 80 71.0 89.0 80.0 0.1 91 chr2R 5266126 intron d4 + chr2R 5266172 intron d4 + chr2R 5266217 intron d4 + chr2R_12_5265001 chr2R_5265001 RAL-332 467 chr2R 5472366 5472392 chr2R 5472461 5472487 11 94 5.0 7.5 6.2 1.5 121 chr2R 5472366 intron CG30440 - chr2R 5472426 intron CG30440 - chr2R 5472487 intron CG30440 - chr2R_11_5470001 chr2R_5470001 RAL-332 468 chr2R 5476365 5476385 chr2R 5476896 5476926 12 540 8.0 3.5 5.8 1.8 561 chr2R 5476365 intron CG30440 - chr2R 5476646 intron CG30440 - chr2R 5476926 intron CG30440 - chr2R_12_5475001 chr2R_5475001 RAL-332 469 chr2R 5484861 5484882 chr2R 5484948 5484966 6 86 0.5 0.5 0.5 4.0 105 chr2R 5484861 intron CG30440 - chr2R 5484914 intron CG30440 - chr2R 5484966 intron CG30440 - chr2R_6_5480001 chr2R_5480001 RAL-332 470 chr2R 5543206 5543215 chr2R 5547274 5547299 invader1 4 4073 0.0 3.5 1.8 1.4 4093 chr2R 5543206 intron CG30438 + chr2R 5545252 intron CG30438 + chr2R 5547299 intron CG30438 + chr2R_4_5545001 chr2R_5545001 RAL-332 471 chr2R 5581405 5581424 chr2R 5627600 5627632 9 46201 2.0 12.5 7.2 1.1 46227 chr2R 5581405 intergenic not near genes chr2R 5604518 intron Fis1 - chr2R 5627632 intergenic not near genes chr2R_9_5600001 chr2R_5600001 RAL-332 472 chr2R 5621030 5621053 chr2R 5621161 5621191 12 134 2.5 7.5 5.0 2.0 161 chr2R 5621030 intergenic not near genes chr2R 5621110 intergenic not near genes chr2R 5621191 intergenic not near genes chr2R_12_5620001 chr2R_5620001 RAL-332 473 chr2R 5640017 5640041 chr2R 5640093 5640118 16 74 5.5 9.0 7.2 2.0 101 chr2R 5640017 intergenic not near genes chr2R 5640068 intergenic not near genes chr2R 5640118 intergenic not near genes chr2R_16_5640001 chr2R_5640001 RAL-332 474 chr2R 5640476 5640498 chr2R 5640559 5640574 9 83 5.5 6.5 6.0 1.3 98 chr2R 5640476 intergenic CG11665 - chr2R 5640525 intergenic CG11665 - chr2R 5640574 intergenic CG11665 - chr2R_9_5640001 chr2R_5640001 RAL-332 475 chr2R 5655417 5655436 chr2R 5655497 5655516 13 78 13.5 10.0 11.8 1.0 99 chr2R 5655417 exon CG1344 + chr2R 5655466 exon CG1344 + chr2R 5655516 exon CG1344 + chr2R_13_5655001 chr2R_5655001 RAL-332 476 chr2R 5655439 5655451 chr2R 5655495 5655531 9 75 6.0 8.5 7.2 1.1 92 chr2R 5655439 exon CG1344 + chr2R 5655485 exon CG1344 + chr2R 5655531 exon CG1344 + chr2R_9_5655001 chr2R_5655001 RAL-332 477 chr2R 5655876 5655907 chr2R 5655964 5655995 10 83 5.5 4.5 5.0 1.7 119 chr2R 5655876 3` UTR CG1344 + chr2R 5655936 3` UTR CG1344 + chr2R 5655995 3` UTR CG1344 + chr2R_10_5655001 chr2R_5655001 RAL-332 478 chr2R 5701755 5701773 chr2R 5701834 5701836 4 76 5.5 2.5 4.0 0.8 81 chr2R 5701755 intergenic vlc + chr2R 5701796 intergenic vlc + chr2R 5701836 intergenic vlc + chr2R_4_5700001 chr2R_5700001 RAL-332 479 chr2R 5712317 5712342 chr2R 5712392 5712407 6 73 4.0 1.5 2.8 1.6 90 chr2R 5712317 intron ap - chr2R 5712362 intron ap - chr2R 5712407 intron ap - chr2R_6_5710001 chr2R_5710001 RAL-332 480 chr2R 5606786 5606817 chr2R 5736774 5736805 7 129989 16.5 28.5 22.5 0.3 130019 chr2R 5606786 intergenic not near genes chr2R 5671796 5` UTR kune + chr2R 5736805 intergenic not near genes chr2R_7_5670001 chr2R_5670001 RAL-332 481 chr2R 5745788 5745810 chr2R 5747776 5747803 INE-1 7 1989 4.5 9.0 6.8 0.9 2015 chr2R 5745788 intergenic not near genes chr2R 5746796 intergenic not near genes chr2R 5747803 intergenic not near genes chr2R_7_5745001 chr2R_5745001 RAL-332 482 chr2R 5848105 5848129 chr2R 5848180 5848209 11 72 9.0 5.5 7.2 1.3 104 chr2R 5848105 intron dpr12 + chr2R 5848157 intron dpr12 + chr2R 5848209 intron dpr12 + chr2R_11_5845001 chr2R_5845001 RAL-332 483 chr2R 5869275 5869307 chr2R 5874351 5874380 flea 8 5070 4.0 5.5 4.8 1.4 5105 chr2R 5869275 intergenic not near genes chr2R 5871828 intergenic not near genes chr2R 5874380 intergenic not near genes chr2R_8_5870001 chr2R_5870001 RAL-332 484 chr2R 5885367 5885374 chr2R 5885496 5885503 4 129 1.5 2.0 1.8 1.4 136 chr2R 5885367 5` UTR CR44125 + chr2R 5885435 5` UTR CR44125 + chr2R 5885503 5` UTR CR44125 + chr2R_4_5885001 chr2R_5885001 RAL-332 485 chr2R 6096730 6096745 chr2R 6101910 6101943 BS 11 5188 4.0 6.0 5.0 1.8 5213 chr2R 6096730 intron EcR - chr2R 6099336 intron EcR - chr2R 6101943 intron EcR - chr2R_11_6095001 chr2R_6095001 RAL-332 486 chr2R 6096747 6096752 chr2R 6101909 6101932 BS 6 5183 3.5 5.5 4.5 1.1 5185 chr2R 6096747 intron EcR - chr2R 6099340 intron EcR - chr2R 6101932 intron EcR - chr2R_6_6095001 chr2R_6095001 RAL-332 487 chr2R 6129329 6129355 chr2R 6129407 6129433 7 75 0.5 1.0 0.8 3.9 104 chr2R 6129329 intron EcR - chr2R 6129381 intron EcR - chr2R 6129433 intron EcR - chr2R_7_6125001 chr2R_6125001 RAL-332 488 chr2R 6178684 6178694 chr2R 6178771 6178781 5 87 7.0 5.5 6.2 0.7 97 chr2R 6178684 intergenic not near genes chr2R 6178732 intergenic not near genes chr2R 6178781 intergenic not near genes chr2R_5_6175001 chr2R_6175001 RAL-332 489 chr2R 6178695 6178710 chr2R 6178765 6178797 11 81 4.0 4.0 4.0 2.2 102 chr2R 6178695 intergenic not near genes chr2R 6178746 intergenic not near genes chr2R 6178797 intergenic not near genes chr2R_11_6175001 chr2R_6175001 RAL-332 490 chr2R 6194698 6194704 chr2R 6194769 6194771 5 73 6.5 9.5 8.0 0.6 73 chr2R 6194698 intron Ptr - chr2R 6194734 intron Ptr - chr2R 6194771 intron Ptr - chr2R_5_6190001 chr2R_6190001 RAL-332 491 chr2R 3998867 3998867 chr2R 6486844 6486860 4 2487983 32.0 24.5 28.2 0.1 2487993 chr2R 3998867 intergenic not near genes chr2R 5242864 intron Nipped-A - chr2R 6486860 intergenic not near genes chr2R_4_5240001 chr2R_5240001 RAL-332 492 chr2R 6494535 6494540 chr2R 6499287 6499302 F-element 4 4753 7.5 3.0 5.2 0.6 4767 chr2R 6494535 intergenic not near genes chr2R 6496918 intergenic not near genes chr2R 6499302 intergenic not near genes chr2R_4_6495001 chr2R_6495001 RAL-332 493 chr2R 6691128 6691140 chr2R 6691207 6691219 6 78 5.0 1.0 3.0 1.5 91 chr2R 6691128 intron CG9422 + chr2R 6691174 intron CG9422 + chr2R 6691219 intron CG9422 + chr2R_6_6690001 chr2R_6690001 RAL-332 494 chr2R 6691142 6691157 chr2R 6691206 6691236 4 74 3.5 0.5 2.0 1.3 94 chr2R 6691142 intron CG9422 + chr2R 6691189 intron CG9422 + chr2R 6691236 intron CG9422 + chr2R_4_6690001 chr2R_6690001 RAL-332 495 chr2R 6696605 6696642 chr2R 6696688 6696706 13 78 6.0 4.0 5.0 2.2 101 chr2R 6696605 5` UTR Mob4 - chr2R 6696656 5` UTR Mob4 - chr2R 6696706 intergenic Rab2 +,Mob4 - chr2R_13_6695001 chr2R_6695001 RAL-332 496 chr2R 6712587 6712600 chr2R 6712683 6712697 5 97 4.5 4.5 4.5 0.9 110 chr2R 6712587 intron,intron CG3409 -,CG45092 - chr2R 6712642 intron,intron CG3409 -,CG45092 - chr2R 6712697 intron,intron CG3409 -,CG45092 - chr2R_5_6710001 chr2R_6710001 RAL-332 497 chr2R 6876225 6876252 chr2R 6876307 6876333 18 80 4.5 7.0 5.8 2.6 108 chr2R 6876225 intron,intron CR44169 +,Spn42Da - chr2R 6876279 5` UTR,intron CR44169 +,Spn42Da - chr2R 6876333 5` UTR,intron CR44169 +,Spn42Da - chr2R_18_6875001 chr2R_6875001 RAL-332 498 chr2R 6887326 6887361 chr2R 6887407 6887439 18 75 9.5 5.5 7.5 2.1 113 chr2R 6887326 exon Spn42De + chr2R 6887382 exon Spn42De + chr2R 6887439 exon Spn42De + chr2R_18_6885001 chr2R_6885001 RAL-332 499 chr2R 6978638 6978665 chr2R 6978821 6978848 12 182 3.5 3.0 3.2 2.9 210 chr2R 6978638 intron vimar - chr2R 6978743 intron vimar - chr2R 6978848 intron vimar - chr2R_12_6975001 chr2R_6975001 RAL-332 500 chr2R 7139947 7139954 chr2R 7141419 7141437 hopper2 6 1486 4.5 9.5 7.0 0.8 1490 chr2R 7139947 intergenic not near genes chr2R 7140692 intergenic not near genes chr2R 7141437 intergenic not near genes chr2R_6_7140001 chr2R_7140001 RAL-332 501 chr2R 7181013 7181022 chr2R 7181083 7181098 5 75 1.5 0.5 1.0 2.5 85 chr2R 7181013 intron pk + chr2R 7181056 intron pk + chr2R 7181098 intron pk + chr2R_5_7180001 chr2R_7180001 RAL-332 502 chr2R 7209847 7209871 chr2R 7217595 7217618 roo 10 7743 1.0 3.0 2.0 3.3 7771 chr2R 7209847 intron pk + chr2R 7213732 intron pk + chr2R 7217618 intron pk + chr2R_10_7210001 chr2R_7210001 RAL-332 503 chr2R 7235818 7235852 chr2R 7240910 7240933 jockey 15 5090 6.5 6.5 6.5 2.0 5115 chr2R 7235818 intergenic not near genes chr2R 7238376 intergenic not near genes chr2R 7240933 intergenic not near genes chr2R_15_7235001 chr2R_7235001 RAL-332 504 chr2R 7250730 7250755 chr2R 7250820 7250851 9 92 2.0 5.5 3.8 1.9 121 chr2R 7250730 intergenic Gadd45 + chr2R 7250790 intergenic Gadd45 + chr2R 7250851 intergenic Gadd45 + chr2R_9_7250001 chr2R_7250001 RAL-332 505 chr2R 7262200 7262218 chr2R 7269261 7269281 297 5 7059 4.5 4.5 4.5 0.9 7081 chr2R 7262200 intergenic not near genes chr2R 7265740 intergenic not near genes chr2R 7269281 intergenic not near genes chr2R_5_7265001 chr2R_7265001 RAL-332 506 chr2R 7272272 7272286 chr2R 7272343 7272368 4 79 0.0 2.0 1.0 2.0 96 chr2R 7272272 intergenic Br140 - chr2R 7272320 3` UTR Br140 - chr2R 7272368 3` UTR Br140 - chr2R_4_7270001 chr2R_7270001 RAL-332 507 chr2R 7290196 7290218 chr2R 7290295 7290305 7 94 0.5 2.0 1.2 3.2 109 chr2R 7290196 intron pwn + chr2R 7290250 intron pwn + chr2R 7290305 intron pwn + chr2R_7_7290001 chr2R_7290001 RAL-332 508 chr2R 7353386 7353418 chr2R 7353492 7353523 16 102 5.0 7.0 6.0 2.3 137 chr2R 7353386 intron Dscam1 - chr2R 7353454 intron Dscam1 - chr2R 7353523 intron Dscam1 - chr2R_16_7350001 chr2R_7350001 RAL-332 509 chr2R 7417903 7418168 chr2R 7417989 7418247 4 78 0.0 3.0 1.5 1.6 344 chr2R 7417903 intergenic not near genes chr2R 7418075 intergenic not near genes chr2R 7418247 intergenic not near genes chr2R_4_7415001 chr2R_7415001 RAL-332 510 chr2R 7434894 7434904 chr2R 7439194 7439205 Juan 5 4301 4.0 2.5 3.2 1.2 4311 chr2R 7434894 intergenic so + chr2R 7437050 intergenic not near genes chr2R 7439205 intergenic not near genes chr2R_5_7435001 chr2R_7435001 RAL-332 511 chr2R 7529058 7529086 chr2R 7529145 7529170 14 84 4.0 5.0 4.5 2.5 112 chr2R 7529058 intron Drat - chr2R 7529114 intron Drat - chr2R 7529170 intron Drat - chr2R_14_7525001 chr2R_7525001 RAL-332 512 chr2R 7551683 7551719 chr2R 7551774 7551807 24 84 2.5 6.0 4.2 4.6 124 chr2R 7551683 intron Corin + chr2R 7551745 intron Corin + chr2R 7551807 intron Corin + chr2R_24_7550001 chr2R_7550001 RAL-332 513 chr2R 7608406 7608429 chr2R 7613609 7613630 I-element 12 5200 5.5 8.0 6.8 1.5 5224 chr2R 7608406 intron CG1358 - chr2R 7611018 intron CG1358 - chr2R 7613630 intron CG1358 - chr2R_12_7610001 chr2R_7610001 RAL-332 514 chr2R 7642868 7642883 chr2R 7642948 7642963 5 77 3.5 5.0 4.2 1.0 95 chr2R 7642868 intron CG43340 + chr2R 7642916 intron CG43340 + chr2R 7642963 intron CG43340 + chr2R_5_7640001 chr2R_7640001 RAL-332 515 chr2R 7815674 7815705 chr2R 7822143 7822164 Burdock 10 6464 7.0 5.0 6.0 1.4 6490 chr2R 7815674 intergenic CG1882 + chr2R 7818919 intergenic not near genes chr2R 7822164 3` UTR cathD - chr2R_10_7815001 chr2R_7815001 RAL-332 516 chr2R 7851264 7851278 chr2R 7851349 7851353 7 84 4.0 9.0 6.5 0.9 89 chr2R 7851264 intron Dgk - chr2R 7851308 intron Dgk - chr2R 7851353 intron Dgk - chr2R_7_7850001 chr2R_7850001 RAL-332 517 chr2R 7851279 7851293 chr2R 7851346 7851379 12 81 2.5 8.5 5.5 1.8 100 chr2R 7851279 intron Dgk - chr2R 7851329 intron Dgk - chr2R 7851379 intron Dgk - chr2R_12_7850001 chr2R_7850001 RAL-332 518 chr2R 7869197 7869221 chr2R 7873980 7874007 Doc 9 4784 4.5 7.5 6.0 1.3 4810 chr2R 7869197 intron Dgk - chr2R 7871602 intron Dgk - chr2R 7874007 intron Dgk - chr2R_9_7870001 chr2R_7870001 RAL-332 519 chr2R 7920827 7920856 chr2R 7920950 7920979 21 121 6.0 3.5 4.8 3.6 152 chr2R 7920827 3` UTR Cul1 + chr2R 7920903 3` UTR,3` UTR Cul1 +,Or43b - chr2R 7920979 3` UTR,exon Cul1 +,Or43b - chr2R_21_7920001 chr2R_7920001 RAL-332 520 chr2R 8015651 8015683 chr2R 8017668 8017706 8 2018 3.5 9.0 6.2 1.1 2055 chr2R 8015651 intergenic mir-4981 + chr2R 8016678 intergenic not near genes chr2R 8017706 intergenic not near genes chr2R_8_8015001 chr2R_8015001 RAL-332 521 chr2R 8166539 8166551 chr2R 8168729 8168741 4 2190 53.0 42.0 47.5 0.1 2202 chr2R 8166539 exon Rs1 + chr2R 8167640 exon Rs1 + chr2R 8168741 exon Gasz + chr2R_4_8165001 chr2R_8165001 RAL-332 522 chr2R 8166538 8166548 chr2R 8168742 8168758 11 2200 52.5 34.0 43.2 0.2 2220 chr2R 8166538 exon Rs1 + chr2R 8167648 exon Rs1 + chr2R 8168758 exon Gasz + chr2R_11_8165001 chr2R_8165001 RAL-332 523 chr2R 8277634 8277664 chr2R 8277729 8277759 24 90 6.5 3.0 4.8 4.1 125 chr2R 8277634 5` UTR CR44280 + chr2R 8277696 5` UTR CR44280 + chr2R 8277759 5` UTR CR44280 + chr2R_24_8275001 chr2R_8275001 RAL-332 524 chr2R 8330883 8330895 chr2R 8331357 8331363 roo 6 478 2.5 3.0 2.8 1.6 480 chr2R 8330883 intron pdm3 + chr2R 8331123 intron pdm3 + chr2R 8331363 intron pdm3 + chr2R_6_8330001 chr2R_8330001 RAL-332 525 chr2R 8398226 8398241 chr2R 8403000 8403012 Doc 6 4777 11.5 10.5 11.0 0.5 4786 chr2R 8398226 intron CG2121 - chr2R 8400619 intron CG2121 - chr2R 8403012 intron CG2121 - chr2R_6_8400001 chr2R_8400001 RAL-332 526 chr2R 8411389 8411422 chr2R 8412713 8412725 15 1320 24.5 12.5 18.5 0.8 1336 chr2R 8411389 intron CG2121 - chr2R 8412057 intergenic CG2121 - chr2R 8412725 intergenic not near genes chr2R_15_8410001 chr2R_8410001 RAL-332 527 chr2R 8411134 8411168 chr2R 8413318 8413338 10 2175 48.0 24.0 36.0 0.3 2204 chr2R 8411134 intron CG2121 - chr2R 8412236 intergenic CG2121 - chr2R 8413338 intergenic not near genes chr2R_10_8410001 chr2R_8410001 RAL-332 528 chr2R 8452903 8452934 chr2R 8452984 8453003 5 77 1.5 1.5 1.5 2.0 100 chr2R 8452903 intergenic not near genes chr2R 8452953 intergenic not near genes chr2R 8453003 intergenic not near genes chr2R_5_8450001 chr2R_8450001 RAL-332 529 chr2R 8453083 8453115 chr2R 8453499 8453530 10 412 3.5 4.5 4.0 2.0 447 chr2R 8453083 intergenic not near genes chr2R 8453306 intergenic Mal-A2 + chr2R 8453530 intergenic Mal-A2 + chr2R_10_8450001 chr2R_8450001 RAL-332 530 chr2R 8501137 8501154 chr2R 8501229 8501240 7 90 0.0 0.0 0.0 7.0 103 chr2R 8501137 intron mtt - chr2R 8501188 intron mtt - chr2R 8501240 intron mtt - chr2R_7_8500001 chr2R_8500001 RAL-332 531 chr2R 8524071 8524075 chr2R 8524151 8524157 4 81 17.0 5.0 11.0 0.3 86 chr2R 8524071 intron mtt - chr2R 8524114 intron mtt - chr2R 8524157 intron mtt - chr2R_4_8520001 chr2R_8520001 RAL-332 532 chr2R 8524076 8524104 chr2R 8524148 8524186 17 78 5.5 4.5 5.0 2.8 110 chr2R 8524076 intron mtt - chr2R 8524131 intron mtt - chr2R 8524186 intron mtt - chr2R_17_8520001 chr2R_8520001 RAL-332 533 chr2R 8714706 8714722 chr2R 8714782 8714801 11 82 0.0 5.5 2.8 2.9 95 chr2R 8714706 3` UTR PGRP-SC1b + chr2R 8714754 3` UTR PGRP-SC1b + chr2R 8714801 3` UTR PGRP-SC1b + chr2R_11_8710001 chr2R_8710001 RAL-332 534 chr2R 8722765 8722777 chr2R 8723005 8723017 pogo 7 240 12.5 6.5 9.5 0.7 252 chr2R 8722765 intron CG14767 - chr2R 8722891 intron CG14767 - chr2R 8723017 intron CG14767 - chr2R_7_8720001 chr2R_8720001 RAL-332 535 chr2R 8722778 8722791 chr2R 8723004 8723027 pogo 13 233 8.0 6.0 7.0 1.6 249 chr2R 8722778 intron CG14767 - chr2R 8722902 intron CG14767 - chr2R 8723027 intron CG14767 - chr2R_13_8720001 chr2R_8720001 RAL-332 536 chr2R 8768199 8768218 chr2R 8768277 8768284 8 72 3.0 6.5 4.8 1.4 85 chr2R 8768199 intergenic CR44278 - chr2R 8768242 intergenic CR44278 - chr2R 8768284 intergenic CR44278 - chr2R_8_8765001 chr2R_8765001 RAL-332 537 chr2R 8833429 8833452 chr2R 8833511 8833531 20 79 3.0 6.0 4.5 3.6 102 chr2R 8833429 intron sns + chr2R 8833480 intron sns + chr2R 8833531 intron sns + chr2R_20_8830001 chr2R_8830001 RAL-332 538 chr2R 8907236 8907250 chr2R 8907485 8907499 5 249 7.0 5.5 6.2 0.7 263 chr2R 8907236 intergenic CG8258 -,CG30349 + chr2R 8907368 intergenic CG30349 +,CG8258 - chr2R 8907499 intergenic CG30349 + chr2R_5_8905001 chr2R_8905001 RAL-332 539 chr2R 8907252 8907268 chr2R 8907484 8907499 10 243 5.0 5.5 5.2 1.6 247 chr2R 8907252 intergenic CG8258 -,CG30349 + chr2R 8907376 intergenic CG30349 +,CG8258 - chr2R 8907499 intergenic CG30349 + chr2R_10_8905001 chr2R_8905001 RAL-332 540 chr2R 8976200 8976224 chr2R 8976289 8976312 7 84 4.0 1.0 2.5 2.0 112 chr2R 8976200 intron CG8213 - chr2R 8976256 intron CG8213 - chr2R 8976312 intron CG8213 - chr2R_7_8975001 chr2R_8975001 RAL-332 541 chr2R 9212691 9212727 chr2R 9213177 9213196 roo 7 482 6.5 9.5 8.0 0.8 505 chr2R 9212691 intergenic CR45309 + chr2R 9212944 intergenic CR45309 + chr2R 9213196 5` UTR CR45309 + chr2R_7_9210001 chr2R_9210001 RAL-332 542 chr2R 9230231 9230243 chr2R 9230305 9230323 6 77 7.5 6.5 7.0 0.8 92 chr2R 9230231 intron hig - chr2R 9230277 intron hig - chr2R 9230323 exon hig - chr2R_6_9230001 chr2R_9230001 RAL-332 543 chr2R 9510666 9510669 chr2R 9510782 9510784 4 116 5.5 5.5 5.5 0.6 118 chr2R 9510666 intron brp + chr2R 9510725 intron brp + chr2R 9510784 intron brp + chr2R_4_9510001 chr2R_9510001 RAL-332 544 chr2R 9510670 9510696 chr2R 9510779 9510810 8 113 0.0 5.0 2.5 2.3 140 chr2R 9510670 intron brp + chr2R 9510740 intron brp + chr2R 9510810 intron brp + chr2R_8_9510001 chr2R_9510001 RAL-332 545 chr2R 9561826 9561845 chr2R 9561914 9561933 6 84 1.0 4.5 2.8 1.6 107 chr2R 9561826 3` UTR,intron CR45281 -,CG1809 + chr2R 9561880 3` UTR,intron CR45281 -,CG1809 + chr2R 9561933 3` UTR,intron CR45281 -,CG1809 + chr2R_6_9560001 chr2R_9560001 RAL-332 546 chr2R 9672317 9672347 chr2R 9672402 9672420 14 80 2.5 4.5 3.5 3.1 103 chr2R 9672317 intron Mmp2 - chr2R 9672368 intron Mmp2 - chr2R 9672420 intron Mmp2 - chr2R_14_9670001 chr2R_9670001 RAL-332 547 chr2R 9699411 9699441 chr2R 9699497 9699503 8 75 11.5 4.5 8.0 0.9 92 chr2R 9699411 intergenic not near genes chr2R 9699457 intergenic not near genes chr2R 9699503 intergenic not near genes chr2R_8_9695001 chr2R_9695001 RAL-332 548 chr2R 9704714 9704722 chr2R 9706558 9706566 5 1846 25.0 16.5 20.8 0.2 1852 chr2R 9704714 intron CG30002 + chr2R 9705640 3` UTR CG30002 + chr2R 9706566 exon CG1773 + chr2R_5_9705001 chr2R_9705001 RAL-332 549 chr2R 9726613 9726644 chr2R 9734164 9734181 17.6 9 7545 2.0 0.0 1.0 4.5 7568 chr2R 9726613 intron sqa - chr2R 9730397 intron sqa - chr2R 9734181 intron sqa - chr2R_9_9730001 chr2R_9730001 RAL-332 550 chr2R 9871045 9871072 chr2R 9871524 9871558 roo 10 476 6.5 5.0 5.8 1.5 513 chr2R 9871045 intron cbx - chr2R 9871302 intron cbx - chr2R 9871558 intron,5` UTR cbx -,CG18446 + chr2R_10_9870001 chr2R_9870001 RAL-332 551 chr2R 9950308 9950317 chr2R 9950382 9950394 4 75 1.5 1.0 1.2 1.8 86 chr2R 9950308 intron Mef2 - chr2R 9950351 intron Mef2 - chr2R 9950394 intron Mef2 - chr2R_4_9950001 chr2R_9950001 RAL-332 552 chr2R 9950319 9950328 chr2R 9950381 9950404 9 71 1.0 1.0 1.0 4.5 85 chr2R 9950319 intron Mef2 - chr2R 9950362 intron Mef2 - chr2R 9950404 intron Mef2 - chr2R_9_9950001 chr2R_9950001 RAL-332 553 chr2R 9966961 9966989 chr2R 9967062 9967090 9 95 3.5 1.5 2.5 2.6 129 chr2R 9966961 intergenic CG12133 + chr2R 9967026 intergenic CG12133 + chr2R 9967090 intergenic CG12133 + chr2R_9_9965001 chr2R_9965001 RAL-332 554 chr2R 9975928 9975949 chr2R 9976032 9976061 19 108 2.5 1.5 2.0 6.3 133 chr2R 9975928 intergenic not near genes chr2R 9975994 intergenic not near genes chr2R 9976061 intergenic not near genes chr2R_19_9975001 chr2R_9975001 RAL-332 555 chr2R 10132203 10132218 chr2R 10132283 10132283 6 77 1.0 4.5 2.8 1.6 80 chr2R 10132203 intron gem + chr2R 10132243 intron gem + chr2R 10132283 intron gem + chr2R_6_10130001 chr2R_10130001 RAL-332 556 chr2R 10147651 10147666 chr2R 10147734 10147749 7 82 10.5 2.5 6.5 0.9 98 chr2R 10147651 exon KCNQ - chr2R 10147700 intron KCNQ - chr2R 10147749 intron KCNQ - chr2R_7_10145001 chr2R_10145001 RAL-332 557 chr2R 10168355 10168356 chr2R 10168432 10168433 4 77 6.5 6.5 6.5 0.5 78 chr2R 10168355 intron KCNQ - chr2R 10168394 intron KCNQ - chr2R 10168433 intron KCNQ - chr2R_4_10165001 chr2R_10165001 RAL-332 558 chr2R 10294976 10294998 chr2R 10295086 10295109 12 109 6.0 4.5 5.2 1.9 133 chr2R 10294976 intron CAP + chr2R 10295042 intron CAP + chr2R 10295109 intron CAP + chr2R_12_10295001 chr2R_10295001 RAL-332 559 chr2R 10313316 10313334 chr2R 10313404 10313422 4 88 1.0 3.0 2.0 1.3 106 chr2R 10313316 intergenic not near genes chr2R 10313369 intergenic not near genes chr2R 10313422 intergenic Ndg + chr2R_4_10310001 chr2R_10310001 RAL-332 560 chr2R 10318520 10318546 chr2R 10318606 10318617 12 80 1.5 4.5 3.0 3.0 97 chr2R 10318520 intron Ndg + chr2R 10318568 intron Ndg + chr2R 10318617 intron Ndg + chr2R_12_10315001 chr2R_10315001 RAL-332 561 chr2R 10319724 10319738 chr2R 10319809 10319825 6 87 7.0 4.5 5.8 0.9 101 chr2R 10319724 intron Ndg + chr2R 10319774 intron Ndg + chr2R 10319825 intron Ndg + chr2R_6_10315001 chr2R_10315001 RAL-332 562 chr2R 10352675 10352687 chr2R 10352752 10352764 7 76 6.5 5.0 5.8 1.0 89 chr2R 10352675 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352720 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352764 intron,exon,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R_7_10350001 chr2R_10350001 RAL-332 563 chr2R 10352688 10352704 chr2R 10352748 10352775 8 70 4.0 4.0 4.0 1.6 87 chr2R 10352688 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352732 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352775 intron,exon,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R_8_10350001 chr2R_10350001 RAL-332 564 chr2R 10411824 10411829 chr2R 10411891 10411905 5 75 0.5 3.5 2.0 1.7 81 chr2R 10411824 intron CG42732 - chr2R 10411864 intron CG42732 - chr2R 10411905 intron CG42732 - chr2R_5_10410001 chr2R_10410001 RAL-332 565 chr2R 10445119 10445150 chr2R 10445202 10445219 12 78 2.0 5.5 3.8 2.5 100 chr2R 10445119 intron Galphao + chr2R 10445169 intron Galphao + chr2R 10445219 intron Galphao + chr2R_12_10445001 chr2R_10445001 RAL-332 566 chr2R 10454095 10454128 chr2R 10454172 10454191 18 74 3.0 6.5 4.8 3.1 96 chr2R 10454095 intron,intron Galphao +,Cyp49a1 - chr2R 10454143 intron,intron Galphao +,Cyp49a1 - chr2R 10454191 intron,intron Galphao +,Cyp49a1 - chr2R_18_10450001 chr2R_10450001 RAL-332 567 chr2R 10585582 10585591 chr2R 10594149 10594171 Tirant 8 8578 2.5 4.5 3.5 1.8 8589 chr2R 10585582 intron psq + chr2R 10589876 intron psq + chr2R 10594171 intron psq + chr2R_8_10585001 chr2R_10585001 RAL-332 568 chr2R 10771854 10771855 chr2R 10772020 10772035 4 172 3.0 5.5 4.2 0.8 181 chr2R 10771854 intron CG33144 - chr2R 10771944 intron CG33144 - chr2R 10772035 intron CG33144 - chr2R_4_10770001 chr2R_10770001 RAL-332 569 chr2R 10827333 10827362 chr2R 10827419 10827431 11 84 2.5 3.5 3.0 2.8 98 chr2R 10827333 exon CG12325 + chr2R 10827382 3` UTR CG12325 + chr2R 10827431 3` UTR,3` UTR CG12325 +,CG12344 - chr2R_11_10825001 chr2R_10825001 RAL-332 570 chr2R 10852280 10852290 chr2R 10852403 10852413 6 123 6.0 6.0 6.0 0.9 133 chr2R 10852280 intron CG30015 - chr2R 10852346 intron CG30015 - chr2R 10852413 intron CG30015 - chr2R_6_10850001 chr2R_10850001 RAL-332 571 chr2R 10852293 10852298 chr2R 10852399 10852410 4 112 4.0 4.5 4.2 0.8 117 chr2R 10852293 intron CG30015 - chr2R 10852352 intron CG30015 - chr2R 10852410 intron CG30015 - chr2R_4_10850001 chr2R_10850001 RAL-332 572 chr2R 10871648 10871677 chr2R 10871727 10871761 4 82 0.0 4.0 2.0 1.3 113 chr2R 10871648 intron CG30015 - chr2R 10871704 intron CG30015 - chr2R 10871761 intron CG30015 - chr2R_4_10870001 chr2R_10870001 RAL-332 573 chr2R 10924553 10924564 chr2R 10924614 10924632 4 70 0.0 6.0 3.0 1.0 79 chr2R 10924553 intergenic not near genes chr2R 10924592 intergenic not near genes chr2R 10924632 intergenic not near genes chr2R_4_10920001 chr2R_10920001 RAL-332 574 chr2R 10937852 10937877 chr2R 10938031 10938056 10 177 4.0 5.0 4.5 1.8 204 chr2R 10937852 intergenic not near genes chr2R 10937954 intergenic Spn47C - chr2R 10938056 intergenic Spn47C - chr2R_10_10935001 chr2R_10935001 RAL-332 575 chr2R 10948023 10948059 chr2R 10955574 10955597 17.6 20 7544 5.5 4.5 5.0 3.3 7574 chr2R 10948023 intergenic not near genes chr2R 10951810 intergenic not near genes chr2R 10955597 intergenic not near genes chr2R_20_10950001 chr2R_10950001 RAL-332 576 chr2R 10967391 10967395 chr2R 10967569 10967573 4 178 3.0 8.5 5.8 0.6 182 chr2R 10967391 intergenic not near genes chr2R 10967482 intergenic not near genes chr2R 10967573 intergenic not near genes chr2R_4_10965001 chr2R_10965001 RAL-332 577 chr2R 11009815 11009845 chr2R 11018989 11019019 roo 15 9172 4.0 5.0 4.5 2.7 9204 chr2R 11009815 intron luna - chr2R 11014417 intron luna - chr2R 11019019 intron luna - chr2R_15_11010001 chr2R_11010001 RAL-332 578 chr2R 11019876 11019897 chr2R 11024942 11024963 jockey 7 5064 10.0 5.5 7.8 0.8 5087 chr2R 11019876 intron luna - chr2R 11022420 intron luna - chr2R 11024963 intron luna - chr2R_7_11020001 chr2R_11020001 RAL-332 579 chr2R 11019898 11019913 chr2R 11024940 11024964 jockey 4 5054 4.5 4.5 4.5 0.7 5066 chr2R 11019898 intron luna - chr2R 11022431 intron luna - chr2R 11024964 intron luna - chr2R_4_11020001 chr2R_11020001 RAL-332 580 chr2R 11119706 11119732 chr2R 11119836 11119851 5 127 1.5 0.0 0.8 2.8 145 chr2R 11119706 3` UTR Cyp12d1-p - chr2R 11119778 3` UTR Cyp12d1-p - chr2R 11119851 3` UTR Cyp12d1-p - chr2R_5_11115001 chr2R_11115001 RAL-332 581 chr2R 11207834 11207846 chr2R 11208007 11208036 BS 9 184 9.5 5.5 7.5 1.1 202 chr2R 11207834 intron shn + chr2R 11207935 intron shn + chr2R 11208036 intron shn + chr2R_9_11205001 chr2R_11205001 RAL-332 582 chr2R 11260518 11260550 chr2R 11260624 11260656 14 103 3.0 5.0 4.0 2.8 138 chr2R 11260518 intergenic not near genes chr2R 11260587 intergenic Cpr47Ed - chr2R 11260656 intergenic Cpr47Ed - chr2R_14_11260001 chr2R_11260001 RAL-332 583 chr2R 11344145 11344154 chr2R 11344241 11344243 5 93 0.0 5.0 2.5 1.4 98 chr2R 11344145 intergenic alphaTry - chr2R 11344194 intergenic alphaTry - chr2R 11344243 intergenic alphaTry - chr2R_5_11340001 chr2R_11340001 RAL-332 584 chr2R 11415519 11415551 chr2R 11418668 11418700 opus 11 3145 3.0 10.0 6.5 1.5 3181 chr2R 11415519 intron Drip - chr2R 11417110 intron Drip - chr2R 11418700 intron Drip - chr2R_11_11415001 chr2R_11415001 RAL-332 585 chr2R 11472648 11472678 chr2R 11473845 11473854 pogo 5 1190 6.5 8.5 7.5 0.6 1206 chr2R 11472648 intergenic not near genes chr2R 11473251 intergenic not near genes chr2R 11473854 intergenic not near genes chr2R_5_11470001 chr2R_11470001 RAL-332 586 chr2R 11577165 11577186 chr2R 11577243 11577264 8 76 3.0 5.5 4.2 1.5 99 chr2R 11577165 intergenic not near genes chr2R 11577214 intergenic not near genes chr2R 11577264 intergenic not near genes chr2R_8_11575001 chr2R_11575001 RAL-332 587 chr2R 11665820 11665831 chr2R 11665908 11665919 4 88 3.5 3.5 3.5 0.9 99 chr2R 11665820 intron,intron Roc2 -,Tret1-1 + chr2R 11665870 intron,intron Roc2 -,Tret1-1 + chr2R 11665919 intron,intron Roc2 -,Tret1-1 + chr2R_4_11665001 chr2R_11665001 RAL-332 588 chr2R 11665834 11665843 chr2R 11665902 11665917 4 73 3.0 3.0 3.0 1.0 83 chr2R 11665834 intron,intron Roc2 -,Tret1-1 + chr2R 11665876 intron,intron Roc2 -,Tret1-1 + chr2R 11665917 intron,intron Roc2 -,Tret1-1 + chr2R_4_11665001 chr2R_11665001 RAL-332 589 chr2R 11672681 11672686 chr2R 11676123 11676147 5 3446 28.0 19.0 23.5 0.2 3466 chr2R 11672681 intron,intron Roc2 -,Tret1-1 + chr2R 11674414 intron,exon Roc2 -,Tret1-1 + chr2R 11676147 intron,intron Roc2 -,Tret1-2 + chr2R_5_11670001 chr2R_11670001 RAL-332 590 chr2R 11677873 11677896 chr2R 11677950 11677965 8 74 5.0 0.5 2.8 2.1 92 chr2R 11677873 intron,exon Roc2 -,Tret1-2 + chr2R 11677919 intron,3` UTR Roc2 -,Tret1-2 + chr2R 11677965 intron,3` UTR Roc2 -,Tret1-2 + chr2R_8_11675001 chr2R_11675001 RAL-332 591 chr2R 11818286 11818294 chr2R 11822723 11822728 4 4434 25.0 25.5 25.2 0.2 4442 chr2R 11818286 intergenic not near genes chr2R 11820507 intergenic not near genes chr2R 11822728 intergenic not near genes chr2R_4_11820001 chr2R_11820001 RAL-332 592 chr2R 11945884 11945888 chr2R 11945961 11945965 4 77 16.5 6.5 11.5 0.3 81 chr2R 11945884 intron CG13188 + chr2R 11945924 intron CG13188 + chr2R 11945965 intron CG13188 + chr2R_4_11945001 chr2R_11945001 RAL-332 593 chr2R 11945890 11945910 chr2R 11945960 11945985 22 73 5.5 6.5 6.0 3.1 95 chr2R 11945890 intron CG13188 + chr2R 11945938 intron CG13188 + chr2R 11945985 intron CG13188 + chr2R_22_11945001 chr2R_11945001 RAL-332 594 chr2R 11999432 11999454 chr2R 11999511 11999533 13 77 6.5 3.5 5.0 2.2 101 chr2R 11999432 intergenic not near genes chr2R 11999482 intergenic not near genes chr2R 11999533 intergenic not near genes chr2R_13_11995001 chr2R_11995001 RAL-332 595 chr2R 12004204 12004218 chr2R 12004284 12004298 7 78 2.5 5.5 4.0 1.4 94 chr2R 12004204 exon otk - chr2R 12004251 intron otk - chr2R 12004298 intron otk - chr2R_7_12000001 chr2R_12000001 RAL-332 596 chr2R 12010327 12010331 chr2R 12010432 12010435 4 105 2.0 1.5 1.8 1.4 108 chr2R 12010327 intron otk - chr2R 12010381 intron otk - chr2R 12010435 intron otk - chr2R_4_12010001 chr2R_12010001 RAL-332 597 chr2R 12045302 12045329 chr2R 12045393 12045420 11 86 3.5 2.0 2.8 2.9 118 chr2R 12045302 intron Drep-1 + chr2R 12045361 intron Drep-1 + chr2R 12045420 intron Drep-1 + chr2R_11_12045001 chr2R_12045001 RAL-332 598 chr2R 12103282 12103289 chr2R 12103544 12103557 4 266 7.0 8.5 7.8 0.5 275 chr2R 12103282 intron jeb - chr2R 12103420 intron jeb - chr2R 12103557 intron jeb - chr2R_4_12100001 chr2R_12100001 RAL-332 599 chr2R 12187471 12187508 chr2R 12190087 12190124 74 2623 181.0 156.0 168.5 0.4 2653 chr2R 12187471 exon Cyp6g1 + chr2R 12188798 exon Cyp6g2 - chr2R 12190124 exon Cyp6g2 - chr2R_74_12185001 chr2R_12185001 RAL-332 600 chr2R 12217583 12217593 chr2R 12217664 12217673 4 80 3.5 3.0 3.2 1.0 90 chr2R 12217583 intergenic not near genes chr2R 12217628 intergenic not near genes chr2R 12217673 intergenic not near genes chr2R_4_12215001 chr2R_12215001 RAL-332 601 chr2R 12217597 12217600 chr2R 12217661 12217681 5 75 2.5 2.5 2.5 1.4 84 chr2R 12217597 intergenic not near genes chr2R 12217639 intergenic not near genes chr2R 12217681 intergenic not near genes chr2R_5_12215001 chr2R_12215001 RAL-332 602 chr2R 12363379 12363418 chr2R 12363811 12363835 15 426 3.0 2.0 2.5 4.3 456 chr2R 12363379 intergenic CG30043 + chr2R 12363607 intergenic CG30043 + chr2R 12363835 intergenic not near genes chr2R_15_12360001 chr2R_12360001 RAL-332 603 chr2R 12481138 12481163 chr2R 12482942 12482967 roo 7 1802 6.0 8.0 7.0 0.9 1829 chr2R 12481138 exon Dh44-R2 + chr2R 12482052 intron Dh44-R2 + chr2R 12482967 intron Dh44-R2 + chr2R_7_12480001 chr2R_12480001 RAL-332 604 chr2R 12501717 12501718 chr2R 12503866 12503870 Rt1c 5 2153 6.5 9.5 8.0 0.6 2153 chr2R 12501717 intron fdl - chr2R 12502794 intron fdl - chr2R 12503870 intron fdl - chr2R_5_12500001 chr2R_12500001 RAL-332 605 chr2R 12771322 12771347 chr2R 12771431 12771456 9 107 4.0 4.0 4.0 1.8 134 chr2R 12771322 intergenic not near genes chr2R 12771389 intergenic not near genes chr2R 12771456 intergenic not near genes chr2R_9_12770001 chr2R_12770001 RAL-332 606 chr2R 12789292 12789328 chr2R 12797655 12797673 roo 11 8354 3.5 4.5 4.0 2.2 8381 chr2R 12789292 intron,3` UTR sca +,CR45137 - chr2R 12793482 intron,intron sca +,CR45137 - chr2R 12797673 intron,3` UTR sca +,CR45137 - chr2R_11_12790001 chr2R_12790001 RAL-332 607 chr2R 12819453 12819479 chr2R 12824522 12824548 jockey 12 5065 3.0 9.0 6.0 1.7 5095 chr2R 12819453 intergenic not near genes chr2R 12822000 intergenic not near genes chr2R 12824548 intergenic not near genes chr2R_12_12820001 chr2R_12820001 RAL-332 608 chr2R 12892346 12892357 chr2R 12892411 12892424 5 68 5.0 0.5 2.8 1.3 78 chr2R 12892346 intron vg + chr2R 12892385 intron vg + chr2R 12892424 intron vg + chr2R_5_12890001 chr2R_12890001 RAL-332 609 chr2R 13136838 13136858 chr2R 13141636 13141654 Doc 6 4798 14.5 7.5 11.0 0.5 4816 chr2R 13136838 exon Cap-G + chr2R 13139246 intron Cap-G + chr2R 13141654 intron Cap-G + chr2R_6_13135001 chr2R_13135001 RAL-332 610 chr2R 13136859 13136870 chr2R 13141634 13141668 Doc 7 4793 9.0 6.5 7.8 0.8 4809 chr2R 13136859 intron Cap-G + chr2R 13139264 intron Cap-G + chr2R 13141668 intron Cap-G + chr2R_7_13135001 chr2R_13135001 RAL-332 611 chr2R 13405719 13405738 chr2R 13405794 13405825 10 84 9.5 5.5 7.5 1.2 106 chr2R 13405719 intergenic not near genes chr2R 13405772 intergenic not near genes chr2R 13405825 intergenic not near genes chr2R_10_13405001 chr2R_13405001 RAL-332 612 chr2R 13432934 13432966 chr2R 13433010 13433042 5 76 1.0 2.5 1.8 1.8 108 chr2R 13432934 intron CG42321 - chr2R 13432988 intron CG42321 - chr2R 13433042 intron,5` UTR CG42321 -,CG30065 + chr2R_5_13430001 chr2R_13430001 RAL-332 613 chr2R 13439114 13439122 chr2R 13439229 13439237 5 115 7.5 1.5 4.5 0.9 123 chr2R 13439114 intergenic CG42321 -,cnn - chr2R 13439176 intergenic CG42321 -,cnn - chr2R 13439237 intergenic cnn -,CG42321 - chr2R_5_13435001 chr2R_13435001 RAL-332 614 chr2R 13554765 13554774 chr2R 13554850 13554858 4 84 0.0 3.5 1.8 1.4 93 chr2R 13554765 intron Roe1 + chr2R 13554812 intron Roe1 + chr2R 13554858 intron Roe1 + chr2R_4_13550001 chr2R_13550001 RAL-332 615 chr2R 13580502 13580511 chr2R 13580851 13580861 jockey 5 350 0.5 3.0 1.8 1.8 359 chr2R 13580502 3` UTR CG6191 - chr2R 13580682 3` UTR,3` UTR CG6191 -,CG45088 - chr2R 13580861 3` UTR,3` UTR CG6191 -,CG45088 - chr2R_5_13580001 chr2R_13580001 RAL-332 616 chr2R 13580512 13580530 chr2R 13580843 13580879 jockey 11 346 0.5 1.5 1.0 5.5 367 chr2R 13580512 3` UTR CG6191 - chr2R 13580696 3` UTR,3` UTR CG6191 -,CG45088 - chr2R 13580879 3` UTR,3` UTR CG6191 -,CG45088 - chr2R_11_13580001 chr2R_13580001 RAL-332 617 chr2R 13721203 13721217 chr2R 13721286 13721300 7 81 12.0 8.5 10.2 0.6 97 chr2R 13721203 intron fas + chr2R 13721252 intron fas + chr2R 13721300 intron fas + chr2R_7_13720001 chr2R_13720001 RAL-332 618 chr2R 13738905 13738936 chr2R 13738996 13739026 10 88 0.0 1.0 0.5 6.7 121 chr2R 13738905 intron fas + chr2R 13738966 intron fas + chr2R 13739026 intron fas + chr2R_10_13735001 chr2R_13735001 RAL-332 619 chr2R 13759509 13759531 chr2R 13759640 13759652 12 128 3.0 7.5 5.2 1.9 143 chr2R 13759509 intergenic not near genes chr2R 13759580 intergenic not near genes chr2R 13759652 intergenic not near genes chr2R_12_13755001 chr2R_13755001 RAL-332 620 chr2R 13768982 13769010 chr2R 13769081 13769105 14 96 6.5 10.5 8.5 1.5 123 chr2R 13768982 intergenic not near genes chr2R 13769044 intergenic not near genes chr2R 13769105 intergenic not near genes chr2R_14_13765001 chr2R_13765001 RAL-332 621 chr2R 13771069 13771094 chr2R 13771156 13771183 5 87 8.0 7.5 7.8 0.6 114 chr2R 13771069 intron Cpr50Ca + chr2R 13771126 intron Cpr50Ca + chr2R 13771183 intron Cpr50Ca + chr2R_5_13770001 chr2R_13770001 RAL-332 622 chr2R 13854962 13854978 chr2R 13855234 13855262 9 279 3.5 5.5 4.5 1.6 300 chr2R 13854962 intron,intron CG6553 -,CR44367 + chr2R 13855112 exon,5` UTR CG6553 -,CR44367 + chr2R 13855262 exon,5` UTR CG6553 -,CR44367 + chr2R_9_13855001 chr2R_13855001 RAL-332 623 chr2R 13905602 13905619 chr2R 13907583 13907601 Rt1a 10 1980 10.0 4.0 7.0 1.2 1999 chr2R 13905602 intron shot - chr2R 13906602 intron shot - chr2R 13907601 intron shot - chr2R_10_13905001 chr2R_13905001 RAL-332 624 chr2R 13905622 13905638 chr2R 13907581 13907598 Rt1a 9 1970 5.0 3.0 4.0 1.8 1976 chr2R 13905622 intron shot - chr2R 13906610 intron shot - chr2R 13907598 intron shot - chr2R_9_13905001 chr2R_13905001 RAL-332 625 chr2R 13925878 13925888 chr2R 13926022 13926042 7 150 5.0 4.5 4.8 1.2 164 chr2R 13925878 intron shot - chr2R 13925960 intron shot - chr2R 13926042 intron shot - chr2R_7_13925001 chr2R_13925001 RAL-332 626 chr2R 14014977 14014999 chr2R 14015771 14015792 6 794 1.0 4.5 2.8 1.6 815 chr2R 14014977 intron mam + chr2R 14015384 intron mam + chr2R 14015792 intron mam + chr2R_6_14015001 chr2R_14015001 RAL-332 627 chr2R 14175987 14175999 chr2R 14176294 14176307 8 306 2.0 5.0 3.5 1.8 320 chr2R 14175987 intron cg + chr2R 14176147 intron cg + chr2R 14176307 intron cg + chr2R_8_14175001 chr2R_14175001 RAL-332 628 chr2R 14308815 14308818 chr2R 14308904 14308907 4 89 7.5 3.0 5.2 0.6 92 chr2R 14308815 intron Shroom + chr2R 14308861 intron Shroom + chr2R 14308907 intron Shroom + chr2R_4_14305001 chr2R_14305001 RAL-332 629 chr2R 14308821 14308841 chr2R 14308899 14308930 13 82 2.0 2.5 2.2 4.1 109 chr2R 14308821 intron Shroom + chr2R 14308876 intron Shroom + chr2R 14308930 intron Shroom + chr2R_13_14305001 chr2R_14305001 RAL-332 630 chr2R 14394236 14394247 chr2R 14399015 14399021 Doc 4 4778 4.5 2.5 3.5 0.9 4785 chr2R 14394236 intergenic not near genes chr2R 14396628 intergenic not near genes chr2R 14399021 intergenic not near genes chr2R_4_14395001 chr2R_14395001 RAL-332 631 chr2R 14467306 14467327 chr2R 14476463 14476485 roo 10 9153 5.0 5.5 5.2 1.6 9179 chr2R 14467306 intergenic not near genes chr2R 14471896 intergenic not near genes chr2R 14476485 5` UTR CR44462 + chr2R_10_14470001 chr2R_14470001 RAL-332 632 chr2R 14497391 14497413 chr2R 14498552 14498579 1360 5 1159 1.5 3.5 2.5 1.4 1188 chr2R 14497391 3` UTR Cpsf160 - chr2R 14497985 intron Cpsf160 - chr2R 14498579 3` UTR Cpsf160 - chr2R_5_14495001 chr2R_14495001 RAL-332 633 chr2R 14514491 14514497 chr2R 14514584 14514590 4 98 5.0 4.0 4.5 0.7 99 chr2R 14514491 intron,intron Cpr51A -,CG30197 + chr2R 14514540 intron,intron Cpr51A -,CG30197 + chr2R 14514590 intron,intron Cpr51A -,CG30197 + chr2R_4_14510001 chr2R_14510001 RAL-332 634 chr2R 14524847 14524857 chr2R 14524944 14524952 4 96 10.5 1.0 5.8 0.6 105 chr2R 14524847 intergenic not near genes chr2R 14524900 intergenic not near genes chr2R 14524952 intergenic not near genes chr2R_4_14520001 chr2R_14520001 RAL-332 635 chr2R 14524859 14524876 chr2R 14524942 14524955 6 86 4.0 1.0 2.5 1.7 96 chr2R 14524859 intergenic not near genes chr2R 14524907 intergenic not near genes chr2R 14524955 intergenic not near genes chr2R_6_14520001 chr2R_14520001 RAL-332 636 chr2R 14530774 14530791 chr2R 14530846 14530870 5 76 3.5 4.0 3.8 1.0 96 chr2R 14530774 intron ttv + chr2R 14530822 intron ttv + chr2R 14530870 intron ttv + chr2R_5_14530001 chr2R_14530001 RAL-332 637 chr2R 14566449 14566479 chr2R 14566535 14566566 14 83 2.5 5.0 3.8 2.9 117 chr2R 14566449 intron ttv + chr2R 14566508 intron ttv + chr2R 14566566 intron ttv + chr2R_14_14565001 chr2R_14565001 RAL-332 638 chr2R 14733613 14733617 chr2R 14733691 14733695 5 78 5.5 7.5 6.5 0.7 82 chr2R 14733613 intergenic not near genes chr2R 14733654 intergenic not near genes chr2R 14733695 intergenic not near genes chr2R_5_14730001 chr2R_14730001 RAL-332 639 chr2R 14733619 14733624 chr2R 14733685 14733702 5 73 4.0 4.5 4.2 1.0 83 chr2R 14733619 intergenic not near genes chr2R 14733660 intergenic not near genes chr2R 14733702 intergenic not near genes chr2R_5_14730001 chr2R_14730001 RAL-332 640 chr2R 14782209 14782216 chr2R 14783226 14783233 6 1023 6.0 6.5 6.2 0.8 1024 chr2R 14782209 intron kn - chr2R 14782721 intron kn - chr2R 14783233 intron kn - chr2R_6_14780001 chr2R_14780001 RAL-332 641 chr2R 14785044 14785079 chr2R 14785120 14785154 15 72 4.5 4.5 4.5 2.7 110 chr2R 14785044 intron kn - chr2R 14785099 intron kn - chr2R 14785154 intron kn - chr2R_15_14785001 chr2R_14785001 RAL-332 642 chr2R 14820912 14820932 chr2R 14820986 14821017 11 84 5.0 6.0 5.5 1.7 105 chr2R 14820912 intergenic not near genes chr2R 14820964 intergenic not near genes chr2R 14821017 intergenic not near genes chr2R_11_14820001 chr2R_14820001 RAL-332 643 chr2R 14855055 14855065 chr2R 14855126 14855157 4 82 3.5 0.5 2.0 1.3 102 chr2R 14855055 intergenic Ciao1 -,HPS1 + chr2R 14855106 intergenic Ciao1 -,HPS1 + chr2R 14855157 intergenic Ciao1 -,HPS1 + chr2R_4_14855001 chr2R_14855001 RAL-332 644 chr2R 14911701 14911728 chr2R 14911824 14911851 9 122 3.5 3.0 3.2 2.1 150 chr2R 14911701 intron CG10249 - chr2R 14911776 intron CG10249 - chr2R 14911851 intron CG10249 - chr2R_9_14910001 chr2R_14910001 RAL-332 645 chr2R 14922149 14922153 chr2R 14922222 14922229 5 75 9.0 6.0 7.5 0.6 80 chr2R 14922149 intron CG10249 - chr2R 14922189 intron CG10249 - chr2R 14922229 intron CG10249 - chr2R_5_14920001 chr2R_14920001 RAL-332 646 chr2R 14922155 14922173 chr2R 14922219 14922231 11 69 2.0 4.0 3.0 2.8 76 chr2R 14922155 intron CG10249 - chr2R 14922193 intron CG10249 - chr2R 14922231 intron CG10249 - chr2R_11_14920001 chr2R_14920001 RAL-332 647 chr2R 14954749 14954782 chr2R 14954825 14954858 7 73 0.5 1.5 1.0 3.5 109 chr2R 14954749 intron aPKC - chr2R 14954804 intron aPKC - chr2R 14954858 intron aPKC - chr2R_7_14950001 chr2R_14950001 RAL-332 648 chr2R 14968211 14968232 chr2R 14968311 14968327 4 97 0.5 3.0 1.8 1.4 116 chr2R 14968211 intron ckn + chr2R 14968269 intron ckn + chr2R 14968327 intron ckn + chr2R_4_14965001 chr2R_14965001 RAL-332 649 chr2R 15004751 15004757 chr2R 15005063 15005085 jockey 5 323 3.5 2.5 3.0 1.2 334 chr2R 15004751 intergenic not near genes chr2R 15004918 intergenic not near genes chr2R 15005085 intergenic not near genes chr2R_5_15000001 chr2R_15000001 RAL-332 650 chr2R 15015457 15015482 chr2R 15022880 15022896 mdg1 17 7420 6.0 3.5 4.8 2.9 7439 chr2R 15015457 intron hbs + chr2R 15019176 intron hbs + chr2R 15022896 intron hbs + chr2R_17_15015001 chr2R_15015001 RAL-332 651 chr2R 15051083 15051110 chr2R 15051165 15051192 11 80 4.5 3.0 3.8 2.3 109 chr2R 15051083 intergenic not near genes chr2R 15051138 intergenic not near genes chr2R 15051192 intergenic not near genes chr2R_11_15050001 chr2R_15050001 RAL-332 652 chr2R 15084980 15085006 chr2R 15092029 15092055 297 12 7045 5.5 4.0 4.8 2.1 7075 chr2R 15084980 intergenic not near genes chr2R 15088518 intergenic not near genes chr2R 15092055 5` UTR CR44457 + chr2R_12_15085001 chr2R_15085001 RAL-332 653 chr2R 15119316 15119351 chr2R 15127797 15127824 Tirant 12 8473 8.0 5.5 6.8 1.5 8508 chr2R 15119316 intron chn + chr2R 15123570 intron chn + chr2R 15127824 intron chn + chr2R_12_15120001 chr2R_15120001 RAL-332 654 chr2R 15137985 15137992 chr2R 15138047 15138074 5 77 4.5 0.0 2.2 1.6 89 chr2R 15137985 intron chn + chr2R 15138030 intron chn + chr2R 15138074 intron chn + chr2R_5_15135001 chr2R_15135001 RAL-332 655 chr2R 15196091 15196127 chr2R 15196187 15196212 19 92 3.5 3.5 3.5 4.2 121 chr2R 15196091 intergenic not near genes chr2R 15196152 intergenic not near genes chr2R 15196212 intergenic not near genes chr2R_19_15195001 chr2R_15195001 RAL-332 656 chr2R 15291826 15291855 chr2R 15292048 15292064 8 218 2.5 1.5 2.0 2.7 238 chr2R 15291826 intron Trpm - chr2R 15291945 intron Trpm - chr2R 15292064 intron Trpm - chr2R_8_15290001 chr2R_15290001 RAL-332 657 chr2R 15296160 15296323 chr2R 15296243 15296431 18 93 6.5 2.5 4.5 3.3 271 chr2R 15296160 intron Trpm - chr2R 15296296 intron Trpm - chr2R 15296431 intron Trpm - chr2R_18_15295001 chr2R_15295001 RAL-332 658 chr2R 15306232 15306249 chr2R 15306567 15306567 6 332 9.5 4.5 7.0 0.8 335 chr2R 15306232 intron Trpm - chr2R 15306400 intron Trpm - chr2R 15306567 intron Trpm - chr2R_6_15305001 chr2R_15305001 RAL-332 659 chr2R 15645682 15645698 chr2R 15645774 15645794 5 95 5.0 1.5 3.2 1.2 112 chr2R 15645682 intron CG42524 + chr2R 15645738 intron CG42524 + chr2R 15645794 intron CG42524 + chr2R_5_15645001 chr2R_15645001 RAL-332 660 chr2R 15653914 15653939 chr2R 15653999 15654024 14 82 4.0 7.5 5.8 2.1 110 chr2R 15653914 intron CG42524 + chr2R 15653969 intron CG42524 + chr2R 15654024 intron CG42524 + chr2R_14_15650001 chr2R_15650001 RAL-332 661 chr2R 15655982 15656006 chr2R 15656060 15656086 9 79 1.5 3.5 2.5 2.6 104 chr2R 15655982 intron CG42524 + chr2R 15656034 intron CG42524 + chr2R 15656086 intron CG42524 + chr2R_9_15655001 chr2R_15655001 RAL-332 662 chr2R 15685366 15685393 chr2R 15685469 15685475 8 96 3.5 4.0 3.8 1.7 109 chr2R 15685366 intron,exon Ranbp11 +,CG30082 - chr2R 15685420 intron,intron Ranbp11 +,CG30082 - chr2R 15685475 intron,intron Ranbp11 +,CG30082 - chr2R_8_15685001 chr2R_15685001 RAL-332 663 chr2R 15697908 15697925 chr2R 15697971 15697997 8 72 2.5 0.5 1.5 3.2 89 chr2R 15697908 exon CG33462 + chr2R 15697952 3` UTR CG33462 + chr2R 15697997 3` UTR CG33462 + chr2R_8_15695001 chr2R_15695001 RAL-332 664 chr2R 15700241 15700270 chr2R 15700351 15700375 9 106 2.0 4.0 3.0 2.2 134 chr2R 15700241 intron,5` UTR CG30080 -,CG42662 - chr2R 15700308 intron,5` UTR CG30080 -,CG42662 - chr2R 15700375 intron,5` UTR CG30080 -,CG42662 - chr2R_9_15700001 chr2R_15700001 RAL-332 665 chr2R 15833522 15833535 chr2R 15833609 15833622 4 87 12.5 7.5 10.0 0.4 100 chr2R 15833522 intron,intron tun +,Poxn - chr2R 15833572 intron,intron tun +,Poxn - chr2R 15833622 intron,intron tun +,Poxn - chr2R_4_15830001 chr2R_15830001 RAL-332 666 chr2R 15833542 15833550 chr2R 15833606 15833618 4 69 9.5 7.0 8.2 0.4 76 chr2R 15833542 intron,intron tun +,Poxn - chr2R 15833580 intron,intron tun +,Poxn - chr2R 15833618 intron,intron tun +,Poxn - chr2R_4_15830001 chr2R_15830001 RAL-332 667 chr2R 15887202 15887221 chr2R 15887294 15887323 7 100 0.0 4.0 2.0 2.3 121 chr2R 15887202 intron sli - chr2R 15887262 intron sli - chr2R 15887323 intron sli - chr2R_7_15885001 chr2R_15885001 RAL-332 668 chr2R 16380128 16380136 chr2R 16380221 16380222 4 92 11.0 4.5 7.8 0.5 94 chr2R 16380128 5` UTR,3` UTR CR45316 +,CR45317 - chr2R 16380175 3` UTR CR45317 - chr2R 16380222 intergenic CR45317 -,CR45316 +,CG43187 + chr2R_4_16380001 chr2R_16380001 RAL-332 669 chr2R 16380137 16380155 chr2R 16380218 16380252 8 92 4.5 3.5 4.0 1.6 115 chr2R 16380137 3` UTR CR45317 - chr2R 16380194 3` UTR CR45317 - chr2R 16380252 intergenic CR45317 -,CR45316 +,CG43187 + chr2R_8_16380001 chr2R_16380001 RAL-332 670 chr2R 16480766 16480776 chr2R 16480832 16480852 7 72 5.5 4.5 5.0 1.2 86 chr2R 16480766 intergenic not near genes chr2R 16480809 intergenic not near genes chr2R 16480852 intergenic not near genes chr2R_7_16480001 chr2R_16480001 RAL-332 671 chr2R 16489266 16489301 chr2R 16489350 16489385 10 82 2.0 7.0 4.5 1.8 119 chr2R 16489266 intergenic CG33459 + chr2R 16489326 intergenic CG33459 + chr2R 16489385 intergenic CG33459 + chr2R_10_16485001 chr2R_16485001 RAL-332 672 chr2R 16518059 16518072 chr2R 16518125 16518130 4 69 1.0 2.0 1.5 1.6 71 chr2R 16518059 intron Sema-2a + chr2R 16518094 intron Sema-2a + chr2R 16518130 intron Sema-2a + chr2R_4_16515001 chr2R_16515001 RAL-332 673 chr2R 16539650 16539669 chr2R 16544850 16544860 copia 6 5200 2.5 3.0 2.8 1.6 5210 chr2R 16539650 intergenic not near genes chr2R 16542255 intergenic not near genes chr2R 16544860 intergenic not near genes chr2R_6_16540001 chr2R_16540001 RAL-332 674 chr2R 16547013 16547034 chr2R 16547083 16547095 8 75 0.0 0.0 0.0 8.0 82 chr2R 16547013 intergenic not near genes chr2R 16547054 intergenic not near genes chr2R 16547095 intergenic not near genes chr2R_8_16545001 chr2R_16545001 RAL-332 675 chr2R 16617063 16617090 chr2R 16617136 16617169 11 75 5.5 1.0 3.2 2.6 106 chr2R 16617063 intron CG5065 + chr2R 16617116 intron CG5065 + chr2R 16617169 intron CG5065 + chr2R_11_16615001 chr2R_16615001 RAL-332 676 chr2R 16705231 16705254 chr2R 16705359 16705381 6 124 3.5 6.5 5.0 1.0 150 chr2R 16705231 intron CG30463 - chr2R 16705306 intron CG30463 - chr2R 16705381 intron CG30463 - chr2R_6_16705001 chr2R_16705001 RAL-332 677 chr2R 16779523 16779533 chr2R 16779687 16779697 6 164 0.0 4.0 2.0 2.0 174 chr2R 16779523 intergenic resilin + chr2R 16779610 intergenic resilin + chr2R 16779697 intergenic resilin + chr2R_6_16775001 chr2R_16775001 RAL-332 678 chr2R 17132972 17132998 chr2R 17133538 17133564 6 563 1.0 2.5 1.8 2.1 592 chr2R 17132972 intergenic Acp54A1 + chr2R 17133268 intergenic Acp54A1 + chr2R 17133564 exon Acp54A1 + chr2R_6_17130001 chr2R_17130001 RAL-332 679 chr2R 17147240 17147252 chr2R 17152271 17152281 jockey 8 5030 9.0 0.0 4.5 1.5 5041 chr2R 17147240 intergenic not near genes chr2R 17149760 intergenic not near genes chr2R 17152281 intergenic not near genes chr2R_8_17145001 chr2R_17145001 RAL-332 680 chr2R 17161172 17161198 chr2R 17161257 17161275 8 77 3.0 6.5 4.8 1.4 103 chr2R 17161172 intergenic CG30457 - chr2R 17161224 intergenic CG30457 - chr2R 17161275 intergenic CG30457 - chr2R_8_17160001 chr2R_17160001 RAL-332 681 chr2R 17176353 17176383 chr2R 17182543 17182573 diver 14 6189 2.0 3.5 2.8 3.7 6220 chr2R 17176353 intergenic not near genes chr2R 17179463 intergenic not near genes chr2R 17182573 intergenic not near genes chr2R_14_17175001 chr2R_17175001 RAL-332 682 chr2R 17227086 17227120 chr2R 17227165 17227200 20 79 3.5 4.0 3.8 4.2 114 chr2R 17227086 intron mbl + chr2R 17227143 intron mbl + chr2R 17227200 intron mbl + chr2R_20_17225001 chr2R_17225001 RAL-332 683 chr2R 17236508 17236537 chr2R 17241712 17241741 copia 10 5202 3.5 5.5 4.5 1.8 5233 chr2R 17236508 intron mbl + chr2R 17239124 intron mbl + chr2R 17241741 intron mbl + chr2R_10_17235001 chr2R_17235001 RAL-332 684 chr2R 17381588 17381617 chr2R 17381676 17381699 8 87 4.0 2.0 3.0 2.0 111 chr2R 17381588 intergenic not near genes chr2R 17381644 intergenic not near genes chr2R 17381699 intergenic not near genes chr2R_8_17380001 chr2R_17380001 RAL-332 685 chr2R 17393796 17393827 chr2R 17393890 17393922 14 93 6.0 6.0 6.0 2.0 126 chr2R 17393796 intergenic not near genes chr2R 17393859 intergenic not near genes chr2R 17393922 intergenic not near genes chr2R_14_17390001 chr2R_17390001 RAL-332 686 chr2R 17395289 17395318 chr2R 17395361 17395386 7 76 3.5 3.0 3.2 1.7 97 chr2R 17395289 intron Sip1 + chr2R 17395338 intron Sip1 + chr2R 17395386 intron Sip1 + chr2R_7_17395001 chr2R_17395001 RAL-332 687 chr2R 17459009 17459021 chr2R 17459094 17459106 5 84 5.5 2.5 4.0 1.0 97 chr2R 17459009 intron CG14478 + chr2R 17459058 intron CG14478 + chr2R 17459106 intron CG14478 + chr2R_5_17455001 chr2R_17455001 RAL-332 688 chr2R 17459022 17459039 chr2R 17459091 17459124 5 78 4.0 2.5 3.2 1.2 102 chr2R 17459022 intron CG14478 + chr2R 17459073 intron CG14478 + chr2R 17459124 intron CG14478 + chr2R_5_17455001 chr2R_17455001 RAL-332 689 chr2R 17485910 17485939 chr2R 17490672 17490687 F-element 9 4758 1.5 0.5 1.0 4.5 4777 chr2R 17485910 5` UTR,intron CG43110 -,NT5E-2 + chr2R 17488298 intron NT5E-2 + chr2R 17490687 intron NT5E-2 + chr2R_9_17485001 chr2R_17485001 RAL-332 690 chr2R 17572860 17572866 chr2R 17572916 17572937 5 65 6.5 5.0 5.8 0.7 77 chr2R 17572860 5` UTR CG42239 + chr2R 17572898 5` UTR CG42239 + chr2R 17572937 exon CG42239 + chr2R_5_17570001 chr2R_17570001 RAL-332 691 chr2R 17626861 17626874 chr2R 17626935 17626952 10 76 9.0 5.5 7.2 1.2 91 chr2R 17626861 intron CG10936 - chr2R 17626906 intron CG10936 - chr2R 17626952 intron CG10936 - chr2R_10_17625001 chr2R_17625001 RAL-332 692 chr2R 17637831 17637858 chr2R 17637909 17637922 9 72 1.0 0.5 0.8 5.0 91 chr2R 17637831 intron CG10936 - chr2R 17637876 intron CG10936 - chr2R 17637922 intron CG10936 - chr2R_9_17635001 chr2R_17635001 RAL-332 693 chr2R 17784031 17784055 chr2R 17784265 17784289 pogo 9 235 3.5 8.5 6.0 1.3 258 chr2R 17784031 intergenic mir-31a - chr2R 17784160 intergenic mir-31a - chr2R 17784289 intergenic mir-31a - chr2R_9_17780001 chr2R_17780001 RAL-332 694 chr2R 17876312 17876347 chr2R 17876742 17876769 6 422 0.0 1.0 0.5 4.0 457 chr2R 17876312 intron Elk + chr2R 17876540 intron Elk + chr2R 17876769 intron Elk + chr2R_6_17875001 chr2R_17875001 RAL-332 695 chr2R 17898862 17898890 chr2R 17898946 17898978 9 87 2.0 7.0 4.5 1.6 116 chr2R 17898862 intron Elk + chr2R 17898920 intron Elk + chr2R 17898978 intron Elk + chr2R_9_17895001 chr2R_17895001 RAL-332 696 chr2R 17911602 17911626 chr2R 17911671 17911699 6 73 2.5 0.0 1.2 2.7 97 chr2R 17911602 intron Elk + chr2R 17911650 intron Elk + chr2R 17911699 intron Elk + chr2R_6_17910001 chr2R_17910001 RAL-332 697 chr2R 17937518 17937553 chr2R 17937598 17937621 18 78 7.5 8.5 8.0 2.0 103 chr2R 17937518 intergenic not near genes chr2R 17937570 intergenic not near genes chr2R 17937621 intergenic not near genes chr2R_18_17935001 chr2R_17935001 RAL-332 698 chr2R 17967365 17967391 chr2R 17967559 17967585 11 192 1.5 5.5 3.5 2.4 220 chr2R 17967365 intergenic not near genes chr2R 17967475 intergenic not near genes chr2R 17967585 intergenic not near genes chr2R_11_17965001 chr2R_17965001 RAL-332 699 chr2R 17982930 17982953 chr2R 17983015 17983017 9 82 3.0 6.0 4.5 1.6 87 chr2R 17982930 intron dpr13 - chr2R 17982974 intron dpr13 - chr2R 17983017 intron dpr13 - chr2R_9_17980001 chr2R_17980001 RAL-332 700 chr2R 18144851 18144870 chr2R 18144973 18144984 6 119 38.0 29.5 33.8 0.2 133 chr2R 18144851 exon pAbp + chr2R 18144918 intron pAbp + chr2R 18144984 exon pAbp + chr2R_6_18140001 chr2R_18140001 RAL-332 701 chr2R 18224614 18224627 chr2R 18224673 18224707 5 70 2.0 4.0 3.0 1.2 93 chr2R 18224614 intergenic not near genes chr2R 18224660 intergenic not near genes chr2R 18224707 intergenic not near genes chr2R_5_18220001 chr2R_18220001 RAL-332 702 chr2R 18307582 18307601 chr2R 18307669 18307689 8 86 5.0 5.0 5.0 1.3 107 chr2R 18307582 intron sbb - chr2R 18307636 intron sbb - chr2R 18307689 intron sbb - chr2R_8_18305001 chr2R_18305001 RAL-332 703 chr2R 18358390 18358419 chr2R 18372600 18372631 roo 8 14206 4.0 2.5 3.2 1.9 14241 chr2R 18358390 intergenic not near genes chr2R 18365510 intergenic not near genes chr2R 18372631 intergenic not near genes chr2R_8_18365001 chr2R_18365001 RAL-332 704 chr2R 18390875 18390902 chr2R 18390963 18390988 4 87 1.0 2.5 1.8 1.4 113 chr2R 18390875 intergenic CG15068 - chr2R 18390932 intergenic CG15068 - chr2R 18390988 intergenic CG15068 - chr2R_4_18390001 chr2R_18390001 RAL-332 705 chr2R 18402760 18402785 chr2R 18402963 18402964 6 198 4.5 0.5 2.5 1.7 204 chr2R 18402760 intergenic GstE4 + chr2R 18402862 intergenic GstE4 + chr2R 18402964 intergenic GstE4 + chr2R_6_18400001 chr2R_18400001 RAL-332 706 chr2R 18408286 18408298 chr2R 18408407 18408419 7 120 14.5 5.0 9.8 0.6 133 chr2R 18408286 exon GstE8 + chr2R 18408352 exon GstE8 + chr2R 18408419 exon GstE8 + chr2R_7_18405001 chr2R_18405001 RAL-332 707 chr2R 18408299 18408315 chr2R 18408406 18408435 7 113 6.0 5.0 5.5 1.1 136 chr2R 18408299 exon GstE8 + chr2R 18408367 exon GstE8 + chr2R 18408435 exon GstE8 + chr2R_7_18405001 chr2R_18405001 RAL-332 708 chr2R 18486850 18486875 chr2R 18487108 18487137 15 260 7.5 5.0 6.2 2.1 287 chr2R 18486850 intron CG30116 - chr2R 18486994 intron CG30116 - chr2R 18487137 intron CG30116 - chr2R_15_18485001 chr2R_18485001 RAL-332 709 chr2R 18528193 18528222 chr2R 18528277 18528294 19 82 3.0 7.0 5.0 3.2 101 chr2R 18528193 intron CG10924 + chr2R 18528244 intron CG10924 + chr2R 18528294 intron CG10924 + chr2R_19_18525001 chr2R_18525001 RAL-332 710 chr2R 18575152 18575165 chr2R 18575368 18575382 7 214 0.5 7.5 4.0 1.4 230 chr2R 18575152 intron GEFmeso - chr2R 18575267 intron GEFmeso - chr2R 18575382 intron GEFmeso - chr2R_7_18575001 chr2R_18575001 RAL-332 711 chr2R 18575815 18575829 chr2R 18581983 18581997 3S18 10 6177 3.0 8.5 5.8 1.5 6182 chr2R 18575815 intron GEFmeso - chr2R 18578906 intron GEFmeso - chr2R 18581997 intron GEFmeso - chr2R_10_18575001 chr2R_18575001 RAL-332 712 chr2R 18590865 18590901 chr2R 18600017 18600053 roo 25 9148 2.5 4.0 3.2 6.0 9188 chr2R 18590865 intron GEFmeso - chr2R 18595459 intron GEFmeso - chr2R 18600053 intron GEFmeso - chr2R_25_18595001 chr2R_18595001 RAL-332 713 chr2R 18610738 18610768 chr2R 18610819 18610839 13 78 5.5 5.0 5.2 2.1 101 chr2R 18610738 5` UTR GEFmeso - chr2R 18610788 5` UTR GEFmeso - chr2R 18610839 5` UTR GEFmeso - chr2R_13_18610001 chr2R_18610001 RAL-332 714 chr2R 18629292 18629300 chr2R 18629409 18629417 5 116 6.5 3.0 4.8 0.9 125 chr2R 18629292 3` UTR Eip55E + chr2R 18629354 3` UTR Eip55E + chr2R 18629417 intergenic Eip55E +,CG5482 - chr2R_5_18625001 chr2R_18625001 RAL-332 715 chr2R 18629304 18629319 chr2R 18629406 18629417 7 106 3.0 3.0 3.0 1.8 113 chr2R 18629304 3` UTR Eip55E + chr2R 18629360 3` UTR Eip55E + chr2R 18629417 intergenic Eip55E +,CG5482 - chr2R_7_18625001 chr2R_18625001 RAL-332 716 chr2R 18812075 18812112 chr2R 18812153 18812176 21 72 3.0 8.5 5.8 3.1 101 chr2R 18812075 intron CG15096 - chr2R 18812126 intron CG15096 - chr2R 18812176 intron CG15096 - chr2R_21_18810001 chr2R_18810001 RAL-332 717 chr2R 18819052 18819065 chr2R 18819129 18819142 5 75 0.5 2.0 1.2 2.3 90 chr2R 18819052 intergenic Phb2 + chr2R 18819097 intergenic Phb2 + chr2R 18819142 intergenic Phb2 + chr2R_5_18815001 chr2R_18815001 RAL-332 718 chr2R 18822423 18822456 chr2R 18822496 18822503 15 69 5.0 3.0 4.0 3.0 80 chr2R 18822423 3` UTR CG15097 - chr2R 18822463 3` UTR CG15097 - chr2R 18822503 3` UTR CG15097 - chr2R_15_18820001 chr2R_18820001 RAL-332 719 chr2R 19015450 19015458 chr2R 19015531 19015531 4 80 8.0 16.0 12.0 0.3 81 chr2R 19015450 intergenic not near genes chr2R 19015490 intergenic not near genes chr2R 19015531 intergenic not near genes chr2R_4_19015001 chr2R_19015001 RAL-332 720 chr2R 19026049 19026057 chr2R 19026189 19026197 4 140 6.0 1.0 3.5 0.9 148 chr2R 19026049 intron 5-HT1B - chr2R 19026123 intron 5-HT1B - chr2R 19026197 intron 5-HT1B - chr2R_4_19025001 chr2R_19025001 RAL-332 721 chr2R 19351705 19351716 chr2R 19352538 19352549 5 833 8.5 2.0 5.2 0.8 844 chr2R 19351705 intron Rgk1 - chr2R 19352127 intron Rgk1 - chr2R 19352549 intron Rgk1 - chr2R_5_19350001 chr2R_19350001 RAL-332 722 chr2R 19351718 19351726 chr2R 19352537 19352558 4 826 5.0 1.5 3.2 1.0 840 chr2R 19351718 intron Rgk1 - chr2R 19352138 intron Rgk1 - chr2R 19352558 intron Rgk1 - chr2R_4_19350001 chr2R_19350001 RAL-332 723 chr2R 19536470 19536496 chr2R 19536548 19536571 7 72 3.5 4.0 3.8 1.5 101 chr2R 19536470 intron sm - chr2R 19536520 intron sm - chr2R 19536571 intron sm - chr2R_7_19535001 chr2R_19535001 RAL-332 724 chr2R 19542273 19542278 chr2R 19542353 19542357 5 83 0.0 3.5 1.8 1.8 84 chr2R 19542273 intron sm - chr2R 19542315 intron sm - chr2R 19542357 intron sm - chr2R_5_19540001 chr2R_19540001 RAL-332 725 chr2R 19542280 19542301 chr2R 19542352 19542385 17 77 0.0 3.5 1.8 6.1 105 chr2R 19542280 intron sm - chr2R 19542332 intron sm - chr2R 19542385 intron sm - chr2R_17_19540001 chr2R_19540001 RAL-332 726 chr2R 19715837 19715857 chr2R 19723325 19723330 blood 9 7486 5.5 9.0 7.2 1.1 7493 chr2R 19715837 intergenic not near genes chr2R 19719584 intergenic not near genes chr2R 19723330 intergenic not near genes chr2R_9_19715001 chr2R_19715001 RAL-332 727 chr2R 19774012 19774041 chr2R 19774125 19774145 4 110 1.0 2.0 1.5 1.6 133 chr2R 19774012 intergenic not near genes chr2R 19774078 intergenic not near genes chr2R 19774145 intergenic not near genes chr2R_4_19770001 chr2R_19770001 RAL-332 728 chr2R 19776595 19776626 chr2R 19779916 19779949 jockey 12 3320 8.0 3.5 5.8 1.8 3354 chr2R 19776595 intergenic not near genes chr2R 19778272 intergenic not near genes chr2R 19779949 intergenic not near genes chr2R_12_19775001 chr2R_19775001 RAL-332 729 chr2R 19846117 19846147 chr2R 19846194 19846224 9 70 2.0 1.5 1.8 3.2 107 chr2R 19846117 intergenic not near genes chr2R 19846170 intergenic not near genes chr2R 19846224 intergenic not near genes chr2R_9_19845001 chr2R_19845001 RAL-332 730 chr2R 19914845 19914870 chr2R 19922257 19922282 mdg1 9 7408 2.5 3.0 2.8 2.4 7437 chr2R 19914845 intergenic not near genes chr2R 19918564 intergenic not near genes chr2R 19922282 intergenic not near genes chr2R_9_19915001 chr2R_19915001 RAL-332 731 chr2R 19957431 19957458 chr2R 19962633 19962660 copia 7 5200 6.0 5.0 5.5 1.1 5229 chr2R 19957431 intergenic CG44623 + chr2R 19960046 intergenic not near genes chr2R 19962660 intergenic not near genes chr2R_7_19960001 chr2R_19960001 RAL-332 732 chr2R 19969816 19969833 chr2R 19969896 19969898 5 77 5.0 4.5 4.8 0.9 82 chr2R 19969816 intergenic not near genes chr2R 19969857 intergenic not near genes chr2R 19969898 intergenic not near genes chr2R_5_19965001 chr2R_19965001 RAL-332 733 chr2R 19972019 19972030 chr2R 19972160 19972172 6 141 2.5 5.5 4.0 1.2 153 chr2R 19972019 intergenic not near genes chr2R 19972096 intergenic not near genes chr2R 19972172 intergenic not near genes chr2R_6_19970001 chr2R_19970001 RAL-332 734 chr2R 19972033 19972035 chr2R 19972158 19972177 5 138 2.0 5.5 3.8 1.0 144 chr2R 19972033 intergenic not near genes chr2R 19972105 intergenic not near genes chr2R 19972177 intergenic not near genes chr2R_5_19970001 chr2R_19970001 RAL-332 735 chr2R 19975851 19975874 chr2R 19975955 19975957 10 96 5.0 2.5 3.8 2.1 106 chr2R 19975851 intergenic not near genes chr2R 19975904 intergenic not near genes chr2R 19975957 intergenic not near genes chr2R_10_19975001 chr2R_19975001 RAL-332 736 chr2R 20001604 20001619 chr2R 20002002 20002033 6 404 4.0 6.0 5.0 1.0 429 chr2R 20001604 intergenic not near genes chr2R 20001818 intergenic not near genes chr2R 20002033 intergenic not near genes chr2R_6_20000001 chr2R_20000001 RAL-332 737 chr2R 20079861 20079869 chr2R 20079931 20079951 6 79 0.0 9.5 4.8 1.0 90 chr2R 20079861 intergenic not near genes chr2R 20079906 intergenic not near genes chr2R 20079951 intergenic not near genes chr2R_6_20075001 chr2R_20075001 RAL-332 738 chr2R 20326763 20326792 chr2R 20326839 20326869 12 71 2.5 1.5 2.0 4.0 106 chr2R 20326763 5` UTR MED8 - chr2R 20326816 intergenic MED8 -,CG8929 + chr2R 20326869 intergenic MED8 -,CG8929 + chr2R_12_20325001 chr2R_20325001 RAL-332 739 chr2R 20395039 20395058 chr2R 20395195 20395233 4 160 5.5 0.0 2.8 1.1 194 chr2R 20395039 intergenic not near genes chr2R 20395136 intergenic not near genes chr2R 20395233 intergenic not near genes chr2R_4_20395001 chr2R_20395001 RAL-332 740 chr2R 20408918 20408933 chr2R 20408990 20409010 4 75 0.5 3.0 1.8 1.4 92 chr2R 20408918 intergenic not near genes chr2R 20408964 intergenic not near genes chr2R 20409010 intergenic not near genes chr2R_4_20405001 chr2R_20405001 RAL-332 741 chr2R 20442941 20442957 chr2R 20443088 20443105 10 150 34.0 45.0 39.5 0.2 164 chr2R 20442941 intron CG12484 + chr2R 20443023 intron CG12484 + chr2R 20443105 intron CG12484 + chr2R_10_20440001 chr2R_20440001 RAL-332 742 chr2R 20491510 20491540 chr2R 20498121 20498141 9 6613 43.0 16.5 29.8 0.3 6631 chr2R 20491510 3` UTR CR44643 - chr2R 20494826 intergenic not near genes chr2R 20498141 intergenic not near genes chr2R_9_20490001 chr2R_20490001 RAL-332 743 chr2R 20541993 20542016 chr2R 20542062 20542094 6 74 4.0 0.0 2.0 2.0 101 chr2R 20541993 intergenic not near genes chr2R 20542044 intergenic not near genes chr2R 20542094 intergenic not near genes chr2R_6_20540001 chr2R_20540001 RAL-332 744 chr2R 20678213 20678234 chr2R 20678337 20678364 11 126 1.0 5.0 3.0 2.8 151 chr2R 20678213 intergenic not near genes chr2R 20678288 intergenic not near genes chr2R 20678364 intergenic not near genes chr2R_11_20675001 chr2R_20675001 RAL-332 745 chr2R 20739446 20739478 chr2R 20744214 20744235 F-element 10 4765 3.5 10.0 6.8 1.3 4789 chr2R 20739446 intron dpr + chr2R 20741840 intron dpr + chr2R 20744235 intron dpr + chr2R_10_20740001 chr2R_20740001 RAL-332 746 chr2R 20962916 20962939 chr2R 20963005 20963026 9 88 2.0 4.5 3.2 2.1 110 chr2R 20962916 intergenic not near genes chr2R 20962971 intergenic not near genes chr2R 20963026 intergenic not near genes chr2R_9_20960001 chr2R_20960001 RAL-332 747 chr2R 21033982 21033987 chr2R 21034057 21034074 4 84 8.5 2.5 5.5 0.6 92 chr2R 21033982 intergenic not near genes chr2R 21034028 intergenic not near genes chr2R 21034074 intergenic not near genes chr2R_4_21030001 chr2R_21030001 RAL-332 748 chr2R 21136899 21136940 chr2R 21136980 21137011 7 77 0.0 3.0 1.5 2.8 112 chr2R 21136899 intron Magi - chr2R 21136955 intron Magi - chr2R 21137011 intron Magi - chr2R_7_21135001 chr2R_21135001 RAL-332 749 chr2R 21141120 21141150 chr2R 21141216 21141246 12 94 3.5 4.0 3.8 2.5 126 chr2R 21141120 intron Magi - chr2R 21141183 intron Magi - chr2R 21141246 intron Magi - chr2R_12_21140001 chr2R_21140001 RAL-332 750 chr2R 21151121 21151145 chr2R 21153748 21153768 opus 12 2626 5.5 8.5 7.0 1.5 2647 chr2R 21151121 intron CG30389 - chr2R 21152444 intron CG30389 - chr2R 21153768 intron CG30389 - chr2R_12_21150001 chr2R_21150001 RAL-332 751 chr2R 21188219 21188232 chr2R 21188300 21188304 6 78 5.5 4.5 5.0 1.0 85 chr2R 21188219 exon tud + chr2R 21188262 intron tud + chr2R 21188304 intron tud + chr2R_6_21185001 chr2R_21185001 RAL-332 752 chr2R 21217323 21217348 chr2R 21217410 21217419 4 78 8.5 7.0 7.8 0.5 96 chr2R 21217323 exon CG15661 - chr2R 21217371 5` UTR CG15661 - chr2R 21217419 5` UTR CG15661 - chr2R_4_21215001 chr2R_21215001 RAL-332 753 chr2R 21212066 21212081 chr2R 21218022 21218037 8 5957 39.0 16.5 27.8 0.3 5971 chr2R 21212066 exon CG44245 + chr2R 21215052 intergenic CG4302 -,CG15661 - chr2R 21218037 3` UTR ASPP - chr2R_8_21215001 chr2R_21215001 RAL-332 754 chr2R 21232648 21232655 chr2R 21232818 21232825 6 169 9.0 0.5 4.8 1.0 177 chr2R 21232648 intron ASPP - chr2R 21232736 intron ASPP - chr2R 21232825 intron ASPP - chr2R_6_21230001 chr2R_21230001 RAL-332 755 chr2R 19086512 19086523 chr2R 21410669 21410671 4 2324154 48.5 15.0 31.8 0.1 2324159 chr2R 19086512 intron 5-HT1A + chr2R 20248592 exon CG9864 - chr2R 21410671 intron Sdc - chr2R_4_20245001 chr2R_20245001 RAL-332 756 chr2R 21472312 21472339 chr2R 21472390 21472417 9 77 2.5 5.0 3.8 1.9 105 chr2R 21472312 intron Sdc - chr2R 21472364 intron Sdc - chr2R 21472417 intron Sdc - chr2R_9_21470001 chr2R_21470001 RAL-332 757 chr2R 21612364 21612384 chr2R 21612443 21612458 4 81 2.0 2.5 2.2 1.2 94 chr2R 21612364 intron CG15673 - chr2R 21612411 intron CG15673 - chr2R 21612458 intron CG15673 - chr2R_4_21610001 chr2R_21610001 RAL-332 758 chr2R 21648057 21648095 chr2R 21648120 21648121 8 38 6.0 6.0 6.0 1.1 64 chr2R 21648057 intron CG10082 + chr2R 21648089 intron CG10082 + chr2R 21648121 intron CG10082 + chr2R_8_21645001 chr2R_21645001 RAL-332 759 chr2R 21710947 21710961 chr2R 21711029 21711032 9 80 2.5 1.0 1.8 3.2 85 chr2R 21710947 intron,intron HmgD +,CG30403 - chr2R 21710990 intron,intron HmgD +,CG30403 - chr2R 21711032 intron,intron HmgD +,CG30403 - chr2R_9_21710001 chr2R_21710001 RAL-332 760 chr2R 21710962 21710972 chr2R 21711028 21711054 5 75 2.0 1.0 1.5 2.0 92 chr2R 21710962 intron,intron HmgD +,CG30403 - chr2R 21711008 intron,intron HmgD +,CG30403 - chr2R 21711054 intron,intron HmgD +,CG30403 - chr2R_5_21710001 chr2R_21710001 RAL-332 761 chr2R 21738277 21738309 chr2R 21747437 21747468 roo 8 9156 2.5 3.5 3.0 2.0 9191 chr2R 21738277 intergenic not near genes chr2R 21742872 intergenic not near genes chr2R 21747468 intergenic not near genes chr2R_8_21740001 chr2R_21740001 RAL-332 762 chr2R 21753086 21753115 chr2R 21753568 21753600 roo 9 478 7.0 5.0 6.0 1.3 514 chr2R 21753086 intergenic not near genes chr2R 21753343 intergenic not near genes chr2R 21753600 intergenic not near genes chr2R_9_21750001 chr2R_21750001 RAL-332 763 chr2R 21769159 21769192 chr2R 21769374 21769406 8 212 0.5 2.0 1.2 3.6 247 chr2R 21769159 exon CG30395 + chr2R 21769282 intron CG30395 + chr2R 21769406 exon CG30395 + chr2R_8_21765001 chr2R_21765001 RAL-332 764 chr2R 21809526 21809555 chr2R 21817766 21817795 roo 11 8237 0.5 3.5 2.0 3.7 8269 chr2R 21809526 intergenic not near genes chr2R 21813660 intergenic not near genes chr2R 21817795 intergenic not near genes chr2R_11_21810001 chr2R_21810001 RAL-332 765 chr2R 21906270 21906303 chr2R 21906371 21906404 11 100 3.5 2.0 2.8 2.9 134 chr2R 21906270 intron Fili + chr2R 21906337 intron Fili + chr2R 21906404 intron Fili + chr2R_11_21905001 chr2R_21905001 RAL-332 766 chr2R 21944841 21944873 chr2R 21944926 21944958 10 84 4.0 3.0 3.5 2.2 117 chr2R 21944841 3` UTR Fili + chr2R 21944900 3` UTR Fili + chr2R 21944958 3` UTR Fili + chr2R_10_21940001 chr2R_21940001 RAL-332 767 chr2R 21963211 21963219 chr2R 21963281 21963302 4 80 2.0 1.5 1.8 1.4 91 chr2R 21963211 intergenic not near genes chr2R 21963256 intergenic not near genes chr2R 21963302 intergenic not near genes chr2R_4_21960001 chr2R_21960001 RAL-332 768 chr2R 22035545 22035575 chr2R 22035632 22035660 18 82 3.5 3.0 3.2 4.3 115 chr2R 22035545 intron,3` UTR CG34370 -,CG9308 + chr2R 22035602 intron,3` UTR CG34370 -,CG9308 + chr2R 22035660 intron,3` UTR CG34370 -,CG9308 + chr2R_18_22035001 chr2R_22035001 RAL-332 769 chr2R 22040156 22040184 chr2R 22040236 22040244 12 75 5.5 6.0 5.8 1.8 88 chr2R 22040156 intergenic not near genes chr2R 22040200 intergenic not near genes chr2R 22040244 intergenic not near genes chr2R_12_22040001 chr2R_22040001 RAL-332 770 chr2R 22090050 22090068 chr2R 22090132 22090139 6 80 3.0 3.0 3.0 1.5 89 chr2R 22090050 3` UTR CG43393 - chr2R 22090094 3` UTR CG43393 - chr2R 22090139 3` UTR CG43393 - chr2R_6_22090001 chr2R_22090001 RAL-332 771 chr2R 22185700 22185708 chr2R 22185786 22185807 5 91 2.0 0.0 1.0 2.5 107 chr2R 22185700 3` UTR MED16 + chr2R 22185754 3` UTR MED16 + chr2R 22185807 3` UTR MED16 + chr2R_5_22185001 chr2R_22185001 RAL-332 772 chr2R 22252401 22252433 chr2R 22252482 22252516 12 79 2.5 2.0 2.2 3.8 115 chr2R 22252401 intron dve + chr2R 22252458 intron dve + chr2R 22252516 intron dve + chr2R_12_22250001 chr2R_22250001 RAL-332 773 chr2R 22290090 22290104 chr2R 22290165 22290179 5 80 1.0 2.5 1.8 1.8 89 chr2R 22290090 intergenic not near genes chr2R 22290134 intergenic not near genes chr2R 22290179 intergenic not near genes chr2R_5_22290001 chr2R_22290001 RAL-332 774 chr2R 22292074 22292107 chr2R 22292161 22292194 18 82 5.5 5.0 5.2 2.9 120 chr2R 22292074 5` UTR CR43422 + chr2R 22292134 5` UTR CR43422 + chr2R 22292194 5` UTR CR43422 + chr2R_18_22290001 chr2R_22290001 RAL-332 775 chr2R 22312774 22312776 chr2R 22312900 22312902 5 126 14.5 4.0 9.2 0.5 128 chr2R 22312774 intergenic CR44758 + chr2R 22312838 intergenic CR44758 + chr2R 22312902 5` UTR CR44758 + chr2R_5_22310001 chr2R_22310001 RAL-332 776 chr2R 22312778 22312803 chr2R 22312899 22312921 18 124 5.5 3.5 4.5 3.3 143 chr2R 22312778 intergenic CR44758 + chr2R 22312850 intergenic CR44758 + chr2R 22312921 5` UTR CR44758 + chr2R_18_22310001 chr2R_22310001 RAL-332 777 chr2R 22349708 22349717 chr2R 22351476 22351491 jockey 7 1777 8.5 4.5 6.5 0.9 1783 chr2R 22349708 intron Liprin-gamma - chr2R 22350600 intron Liprin-gamma - chr2R 22351491 intron Liprin-gamma - chr2R_7_22350001 chr2R_22350001 RAL-332 778 chr2R 22360380 22360394 chr2R 22360812 22360813 jockey 6 430 7.5 3.5 5.5 0.9 433 chr2R 22360380 intron Liprin-gamma - chr2R 22360596 intron Liprin-gamma - chr2R 22360813 intron Liprin-gamma - chr2R_6_22360001 chr2R_22360001 RAL-332 779 chr2R 22363684 22363699 chr2R 22363760 22363775 7 75 14.0 5.5 9.8 0.6 91 chr2R 22363684 intron Liprin-gamma - chr2R 22363730 intron Liprin-gamma - chr2R 22363775 intron Liprin-gamma - chr2R_7_22360001 chr2R_22360001 RAL-332 780 chr2R 22363701 22363716 chr2R 22363758 22363768 9 68 6.0 4.5 5.2 1.5 67 chr2R 22363701 intron Liprin-gamma - chr2R 22363734 intron Liprin-gamma - chr2R 22363768 intron Liprin-gamma - chr2R_9_22360001 chr2R_22360001 RAL-332 781 chr2R 22507428 22507447 chr2R 22507495 22507527 10 75 5.5 6.5 6.0 1.4 99 chr2R 22507428 intron px - chr2R 22507478 intron px - chr2R 22507527 intron px - chr2R_10_22505001 chr2R_22505001 RAL-332 782 chr2R 22525762 22525786 chr2R 22529321 22529327 jockey 8 3552 3.5 7.0 5.2 1.3 3565 chr2R 22525762 intron px - chr2R 22527544 intron px - chr2R 22529327 intron px - chr2R_8_22525001 chr2R_22525001 RAL-332 783 chr2R 22575679 22575696 chr2R 22575742 22575774 11 68 4.0 2.5 3.2 2.6 95 chr2R 22575679 intron dnr1 - chr2R 22575726 intron dnr1 - chr2R 22575774 intron dnr1 - chr2R_11_22575001 chr2R_22575001 RAL-332 784 chr2R 22577089 22577118 chr2R 22577169 22577177 5 76 3.0 0.0 1.5 2.0 88 chr2R 22577089 intron dnr1 - chr2R 22577133 intron dnr1 - chr2R 22577177 intron dnr1 - chr2R_5_22575001 chr2R_22575001 RAL-332 785 chr2R 22588147 22588157 chr2R 22588249 22588251 5 99 11.5 12.5 12.0 0.4 104 chr2R 22588147 intron dnr1 - chr2R 22588199 intron dnr1 - chr2R 22588251 intron dnr1 - chr2R_5_22585001 chr2R_22585001 RAL-332 786 chr2R 22623451 22623485 chr2R 22623591 22623623 23 134 5.5 5.5 5.5 3.5 172 chr2R 22623451 intron CG33143 + chr2R 22623537 intron CG33143 + chr2R 22623623 intron CG33143 + chr2R_23_22620001 chr2R_22620001 RAL-332 787 chr2R 22723236 22723263 chr2R 22723312 22723318 7 71 2.0 8.5 5.2 1.1 82 chr2R 22723236 intron jbug - chr2R 22723277 intron jbug - chr2R 22723318 intron jbug - chr2R_7_22720001 chr2R_22720001 RAL-332 788 chr2R 22729459 22729467 chr2R 22729667 22729675 INE-1 7 208 5.0 4.0 4.5 1.3 216 chr2R 22729459 intron jbug - chr2R 22729567 intron jbug - chr2R 22729675 intron jbug - chr2R_7_22725001 chr2R_22725001 RAL-332 789 chr2R 22754072 22754073 chr2R 22754154 22754158 4 84 11.5 7.0 9.2 0.4 86 chr2R 22754072 intron CG42260 - chr2R 22754115 intron CG42260 - chr2R 22754158 intron CG42260 - chr2R_4_22750001 chr2R_22750001 RAL-332 790 chr2R 22774962 22774975 chr2R 22775380 22775393 jockey 10 417 9.0 7.5 8.2 1.1 431 chr2R 22774962 intron CG42260 - chr2R 22775178 intron CG42260 - chr2R 22775393 intron CG42260 - chr2R_10_22775001 chr2R_22775001 RAL-332 791 chr2R 22774977 22775002 chr2R 22775378 22775421 jockey 12 408 4.0 7.5 5.8 1.8 444 chr2R 22774977 intron CG42260 - chr2R 22775199 intron CG42260 - chr2R 22775421 intron CG42260 - chr2R_12_22775001 chr2R_22775001 RAL-332 792 chr2R 22781956 22781984 chr2R 22782142 22782163 12 184 6.0 4.0 5.0 2.0 207 chr2R 22781956 intron CG42260 - chr2R 22782060 intron CG42260 - chr2R 22782163 intron CG42260 - chr2R_12_22780001 chr2R_22780001 RAL-332 793 chr2R 22781986 22781989 chr2R 22782138 22782172 7 180 4.5 3.5 4.0 1.4 186 chr2R 22781986 intron CG42260 - chr2R 22782079 intron CG42260 - chr2R 22782172 intron CG42260 - chr2R_7_22780001 chr2R_22780001 RAL-332 794 chr2R 22843040 22843053 chr2R 22844987 22845015 flea 5 1954 5.5 8.0 6.8 0.6 1975 chr2R 22843040 intergenic CG9826 + chr2R 22844028 intergenic not near genes chr2R 22845015 intergenic not near genes chr2R_5_22840001 chr2R_22840001 RAL-332 795 chr2R 22860773 22860804 chr2R 22860864 22860893 9 83 2.5 0.0 1.2 4.1 120 chr2R 22860773 intergenic not near genes chr2R 22860833 intergenic not near genes chr2R 22860893 intergenic not near genes chr2R_9_22860001 chr2R_22860001 RAL-332 796 chr2R 22952584 22952600 chr2R 22952644 22952677 15 71 4.0 7.5 5.8 2.2 93 chr2R 22952584 intron CR32835 - chr2R 22952630 intron CR32835 - chr2R 22952677 intron CR32835 - chr2R_15_22950001 chr2R_22950001 RAL-332 797 chr2R 22957053 22957061 chr2R 22957132 22957140 5 78 4.5 5.0 4.8 0.9 87 chr2R 22957053 intergenic CR44780 - chr2R 22957096 intergenic CR44780 - chr2R 22957140 intergenic CR44780 - chr2R_5_22955001 chr2R_22955001 RAL-332 798 chr2R 22971504 22971510 chr2R 22971583 22971588 4 78 7.5 6.0 6.8 0.5 84 chr2R 22971504 intergenic not near genes chr2R 22971546 intergenic not near genes chr2R 22971588 intergenic not near genes chr2R_4_22970001 chr2R_22970001 RAL-332 799 chr2R 22971511 22971531 chr2R 22971576 22971610 7 70 3.5 4.5 4.0 1.4 99 chr2R 22971511 intergenic not near genes chr2R 22971560 intergenic not near genes chr2R 22971610 intergenic not near genes chr2R_7_22970001 chr2R_22970001 RAL-332 800 chr2R 22988313 22988321 chr2R 22988392 22988399 6 80 9.0 10.5 9.8 0.6 86 chr2R 22988313 intron twi + chr2R 22988356 intron twi + chr2R 22988399 intron twi + chr2R_6_22985001 chr2R_22985001 RAL-332 801 chr2R 23061773 23061791 chr2R 23061867 23061885 5 92 7.5 8.5 8.0 0.6 112 chr2R 23061773 3` UTR l(2)06496 - chr2R 23061829 3` UTR l(2)06496 - chr2R 23061885 3` UTR l(2)06496 - chr2R_5_23060001 chr2R_23060001 RAL-332 802 chr2R 23133459 23133472 chr2R 23133530 23133551 5 75 0.0 5.0 2.5 1.4 92 chr2R 23133459 intergenic not near genes chr2R 23133505 intergenic not near genes chr2R 23133551 intergenic not near genes chr2R_5_23130001 chr2R_23130001 RAL-332 803 chr2R 23133922 23133940 chr2R 23133992 23134001 5 71 5.0 1.5 3.2 1.2 79 chr2R 23133922 intergenic not near genes chr2R 23133962 intergenic not near genes chr2R 23134001 intergenic not near genes chr2R_5_23130001 chr2R_23130001 RAL-332 804 chr2R 23175048 23175066 chr2R 23175114 23175143 8 71 5.5 9.0 7.2 1.0 95 chr2R 23175048 intron CG34371 - chr2R 23175096 intron CG34371 - chr2R 23175143 intron CG34371 - chr2R_8_23175001 chr2R_23175001 RAL-332 805 chr2R 23186107 23186117 chr2R 23186238 23186251 5 134 1.5 0.0 0.8 2.8 144 chr2R 23186107 intron CG34371 - chr2R 23186179 intron CG34371 - chr2R 23186251 intron CG34371 - chr2R_5_23185001 chr2R_23185001 RAL-332 806 chr2R 23191767 23191776 chr2R 23192382 23192411 10 630 2.5 5.0 3.8 2.1 644 chr2R 23191767 intron CG34371 - chr2R 23192089 intron CG34371 - chr2R 23192411 intron CG34371 - chr2R_10_23190001 chr2R_23190001 RAL-332 807 chr2R 23222585 23222611 chr2R 23222674 23222700 7 88 2.0 8.5 5.2 1.1 115 chr2R 23222585 intergenic not near genes chr2R 23222642 intergenic not near genes chr2R 23222700 intergenic not near genes chr2R_7_23220001 chr2R_23220001 RAL-332 808 chr2R 23291328 23291338 chr2R 23291406 23291415 4 78 4.0 3.0 3.5 0.9 87 chr2R 23291328 3` UTR CR44783 - chr2R 23291372 3` UTR CR44783 - chr2R 23291415 intergenic CR44783 - chr2R_4_23290001 chr2R_23290001 RAL-332 809 chr2R 23356273 23356308 chr2R 23356362 23356397 16 86 5.0 3.5 4.2 3.1 124 chr2R 23356273 3` UTR Rpi + chr2R 23356335 3` UTR Rpi + chr2R 23356397 3` UTR,3` UTR Rpi +,CG3500 - chr2R_16_23355001 chr2R_23355001 RAL-332 810 chr2R 23423740 23423774 chr2R 23423898 23423917 14 153 3.5 9.0 6.2 1.9 177 chr2R 23423740 intron CG9815 - chr2R 23423828 intron CG9815 - chr2R 23423917 intron CG9815 - chr2R_14_23420001 chr2R_23420001 RAL-332 811 chr2R 23437234 23437242 chr2R 23437310 23437319 5 76 10.0 8.5 9.2 0.5 85 chr2R 23437234 intergenic not near genes chr2R 23437276 intergenic not near genes chr2R 23437319 intergenic not near genes chr2R_5_23435001 chr2R_23435001 RAL-332 812 chr2R 23463390 23463420 chr2R 23463464 23463499 16 76 7.0 8.0 7.5 1.9 109 chr2R 23463390 intron CG43795 + chr2R 23463444 intron CG43795 + chr2R 23463499 intron CG43795 + chr2R_16_23460001 chr2R_23460001 RAL-332 813 chr2R 23481661 23481667 chr2R 23481748 23481754 4 87 0.0 4.0 2.0 1.3 93 chr2R 23481661 intron CG43795 + chr2R 23481708 intron CG43795 + chr2R 23481754 intron CG43795 + chr2R_4_23480001 chr2R_23480001 RAL-332 814 chr2R 23508919 23508945 chr2R 23509036 23509062 11 116 2.5 2.5 2.5 3.1 143 chr2R 23508919 intergenic not near genes chr2R 23508990 intergenic not near genes chr2R 23509062 intergenic not near genes chr2R_11_23505001 chr2R_23505001 RAL-332 815 chr2R 23529572 23529607 chr2R 23537148 23537181 412 8 7572 6.0 3.0 4.5 1.5 7609 chr2R 23529572 intron bw - chr2R 23533376 intron bw - chr2R 23537181 exon bw - chr2R_8_23530001 chr2R_23530001 RAL-332 816 chr2R 23563892 23563914 chr2R 23563971 23563994 9 76 5.0 4.0 4.5 1.6 102 chr2R 23563892 3` UTR Pi3K59F + chr2R 23563943 3` UTR Pi3K59F + chr2R 23563994 3` UTR,5` UTR Pi3K59F +,CG30184 + chr2R_9_23560001 chr2R_23560001 RAL-332 817 chr2R 23802300 23802311 chr2R 23802390 23802398 6 90 0.0 6.0 3.0 1.5 98 chr2R 23802300 3` UTR CG30177 + chr2R 23802349 3` UTR CG30177 + chr2R 23802398 3` UTR CG30177 + chr2R_6_23800001 chr2R_23800001 RAL-332 818 chr2R 23914319 23914323 chr2R 23921943 23921943 412 4 7623 7.0 11.5 9.2 0.4 7624 chr2R 23914319 exon kcc + chr2R 23918131 intron kcc + chr2R 23921943 intron kcc + chr2R_4_23915001 chr2R_23915001 RAL-332 819 chr2R 23914324 23914332 chr2R 23921942 23921948 412 8 7617 5.0 11.0 8.0 0.9 7624 chr2R 23914324 exon kcc + chr2R 23918136 intron kcc + chr2R 23921948 intron kcc + chr2R_8_23915001 chr2R_23915001 RAL-332 820 chr2R 23986526 23986541 chr2R 23986592 23986621 4 74 1.5 2.5 2.0 1.3 95 chr2R 23986526 intron Phm - chr2R 23986574 intron Phm - chr2R 23986621 intron,5` UTR Phm -,CG30178 + chr2R_4_23985001 chr2R_23985001 RAL-332 821 chr2R 24031379 24031408 chr2R 24031463 24031491 9 83 2.5 4.0 3.2 2.1 112 chr2R 24031379 5` UTR CG30172 - chr2R 24031435 intergenic CG30172 -,Chi - chr2R 24031491 intergenic Chi -,CG30172 - chr2R_9_24030001 chr2R_24030001 RAL-332 822 chr2R 24147079 24147098 chr2R 24154652 24154676 412 9 7576 6.5 11.5 9.0 0.9 7597 chr2R 24147079 intron Dat + chr2R 24150878 intron Dat + chr2R 24154676 intron Dat + chr2R_9_24150001 chr2R_24150001 RAL-332 823 chr2R 24177234 24177269 chr2R 24184719 24184754 412 11 7482 1.0 1.0 1.0 5.5 7520 chr2R 24177234 3` UTR Nop60B + chr2R 24180994 intron Nop60B + chr2R 24184754 3` UTR Nop60B + chr2R_11_24180001 chr2R_24180001 RAL-332 824 chr2R 24212337 24212355 chr2R 24212435 24212453 4 96 5.5 8.0 6.8 0.5 116 chr2R 24212337 intergenic CG30419 - chr2R 24212395 intergenic CG30419 - chr2R 24212453 intergenic CG30419 - chr2R_4_24210001 chr2R_24210001 RAL-332 825 chr2R 24323615 24323654 chr2R 24323708 24323747 25 90 2.0 4.0 3.0 6.2 132 chr2R 24323615 intergenic not near genes chr2R 24323681 intergenic not near genes chr2R 24323747 intergenic not near genes chr2R_25_24320001 chr2R_24320001 RAL-332 826 chr2R 24353426 24353455 chr2R 24361788 24361817 roo 14 8360 4.0 10.0 7.0 1.8 8391 chr2R 24353426 intron,intron bs +,CR44811 - chr2R 24357622 intron,intron bs +,CR44811 - chr2R 24361817 intron,intron bs +,CR44811 - chr2R_14_24355001 chr2R_24355001 RAL-332 827 chr2R 24430925 24430950 chr2R 24431013 24431031 8 82 0.0 4.0 2.0 2.7 106 chr2R 24430925 intergenic CG15873 -,Pgam5-2 - chr2R 24430978 intergenic CG15873 -,Pgam5-2 - chr2R 24431031 intergenic Pgam5-2 -,CG15873 - chr2R_8_24430001 chr2R_24430001 RAL-332 828 chr2R 24442702 24442715 chr2R 24442816 24442848 10 125 3.0 5.0 4.0 2.0 146 chr2R 24442702 intergenic not near genes chr2R 24442775 intergenic not near genes chr2R 24442848 intergenic not near genes chr2R_10_24440001 chr2R_24440001 RAL-332 829 chr2R 24456065 24456097 chr2R 24456145 24456177 11 78 4.5 3.5 4.0 2.2 112 chr2R 24456065 intron CG13579 + chr2R 24456121 intron CG13579 + chr2R 24456177 intron CG13579 + chr2R_11_24455001 chr2R_24455001 RAL-332 830 chr2R 24480429 24480462 chr2R 24480504 24480513 17 70 2.5 6.0 4.2 3.3 84 chr2R 24480429 intron CG13579 + chr2R 24480471 intron CG13579 + chr2R 24480513 intron CG13579 + chr2R_17_24480001 chr2R_24480001 RAL-332 831 chr2R 24509306 24509340 chr2R 24509391 24509421 12 82 5.5 5.0 5.2 1.9 115 chr2R 24509306 intergenic Letm1 - chr2R 24509364 intergenic Letm1 - chr2R 24509421 intergenic Letm1 - chr2R_12_24505001 chr2R_24505001 RAL-332 832 chr2R 24590112 24590146 chr2R 24590204 24590235 21 86 6.0 7.5 6.8 2.7 123 chr2R 24590112 intron pio + chr2R 24590174 intron pio + chr2R 24590235 intron pio + chr2R_21_24590001 chr2R_24590001 RAL-332 833 chr2R 24636912 24636931 chr2R 24636989 24637017 7 83 2.5 0.0 1.2 3.2 105 chr2R 24636912 intron CG13594 - chr2R 24636964 intron CG13594 - chr2R 24637017 intron CG13594 - chr2R_7_24635001 chr2R_24635001 RAL-332 834 chr2R 24647574 24647617 chr2R 24655145 24655174 412 14 7555 0.5 4.5 2.5 4.0 7600 chr2R 24647574 intergenic not near genes chr2R 24651374 intergenic not near genes chr2R 24655174 intergenic not near genes chr2R_14_24650001 chr2R_24650001 RAL-332 835 chr2R 24727883 24727915 chr2R 24735390 24735411 mdg1 12 7505 2.0 6.5 4.2 2.3 7528 chr2R 24727883 intron Mid1 - chr2R 24731647 intron Mid1 - chr2R 24735411 intron Mid1 - chr2R_12_24730001 chr2R_24730001 RAL-332 836 chr2R 24763622 24763642 chr2R 24765588 24765609 G2 9 1968 8.5 12.5 10.5 0.8 1987 chr2R 24763622 exon CG3894 + chr2R 24764616 intron CG3894 + chr2R 24765609 exon CG3894 + chr2R_9_24760001 chr2R_24760001 RAL-332 837 chr2R 24790918 24790930 chr2R 24790995 24791007 4 77 3.5 11.0 7.2 0.5 89 chr2R 24790918 intron Reg-5 - chr2R 24790962 intron Reg-5 - chr2R 24791007 intron Reg-5 - chr2R_4_24790001 chr2R_24790001 RAL-332 838 chr2R 24800451 24800472 chr2R 24800534 24800546 7 80 5.5 7.0 6.2 1.0 95 chr2R 24800451 3` UTR CG3611 + chr2R 24800498 3` UTR CG3611 + chr2R 24800546 3` UTR CG3611 + chr2R_7_24800001 chr2R_24800001 RAL-332 839 chr2R 24883879 24883914 chr2R 24883962 24883978 11 75 3.0 5.0 4.0 2.2 99 chr2R 24883879 intron NKAIN + chr2R 24883928 intron NKAIN + chr2R 24883978 intron NKAIN + chr2R_11_24880001 chr2R_24880001 RAL-332 840 chr2R 24983996 24984034 chr2R 24984109 24984132 16 108 4.5 2.5 3.5 3.6 136 chr2R 24983996 intron emp - chr2R 24984064 intron emp - chr2R 24984132 intron emp - chr2R_16_24980001 chr2R_24980001 RAL-332 841 chr2R 25004901 25004908 chr2R 25004979 25004986 5 78 5.5 5.5 5.5 0.8 85 chr2R 25004901 intron zip - chr2R 25004944 intron zip - chr2R 25004986 intron zip - chr2R_5_25000001 chr2R_25000001 RAL-332 842 chr2R 25004910 25004924 chr2R 25004974 25005000 11 75 2.0 4.5 3.2 2.6 90 chr2R 25004910 intron zip - chr2R 25004955 intron zip - chr2R 25005000 intron zip - chr2R_11_25000001 chr2R_25000001 RAL-332 843 chr2R 25014551 25014575 chr2R 25014620 25014651 18 71 2.5 4.5 3.5 4.0 100 chr2R 25014551 intron uzip + chr2R 25014601 intron uzip + chr2R 25014651 intron uzip + chr2R_18_25010001 chr2R_25010001 RAL-332 844 chr2R 25018339 25018374 chr2R 25018439 25018462 21 98 5.5 6.0 5.8 3.1 123 chr2R 25018339 intron uzip + chr2R 25018400 intron uzip + chr2R 25018462 intron uzip + chr2R_21_25015001 chr2R_25015001 RAL-332 845 chr2R 25038373 25038405 chr2R 25038920 25038952 4 551 25.5 31.5 28.5 0.1 579 chr2R 25038373 intron Nplp1 + chr2R 25038662 intron Nplp1 + chr2R 25038952 intron Nplp1 + chr2R_4_25035001 chr2R_25035001 RAL-332 846 chr2R 25061342 25061354 chr2R 25061425 25061436 4 82 9.0 6.5 7.8 0.5 94 chr2R 25061342 intergenic not near genes chr2R 25061389 intergenic not near genes chr2R 25061436 intergenic not near genes chr2R_4_25060001 chr2R_25060001 RAL-332 847 chr2R 25081614 25081637 chr2R 25082703 25082731 12 1090 2.0 8.5 5.2 1.9 1117 chr2R 25081614 intron gol - chr2R 25082172 intron gol - chr2R 25082731 intron gol - chr2R_12_25080001 chr2R_25080001 RAL-332 848 chr2R 25101275 25101291 chr2R 25101377 25101393 7 101 5.0 2.0 3.5 1.6 118 chr2R 25101275 intron lov - chr2R 25101334 intron lov - chr2R 25101393 intron lov - chr2R_7_25100001 chr2R_25100001 RAL-332 849 chr2R 25101294 25101308 chr2R 25101376 25101401 6 93 3.0 2.0 2.5 1.7 107 chr2R 25101294 intron lov - chr2R 25101348 intron lov - chr2R 25101401 intron lov - chr2R_6_25100001 chr2R_25100001 RAL-332 850 chr3L 110224 110233 chr3L 119377 119400 roo 4 9164 3.0 9.0 6.0 0.6 9176 chr3L 110224 intergenic not near genes chr3L 114812 intergenic not near genes chr3L 119400 intergenic not near genes chr3L_4_110001 chr3L_110001 RAL-332 851 chr3L 402705 402714 chr3L 409748 409767 297 5 7044 6.5 11.0 8.8 0.5 7062 chr3L 402705 intergenic not near genes chr3L 406236 intergenic not near genes chr3L 409767 intergenic not near genes chr3L_5_405001 chr3L_405001 RAL-332 852 chr3L 491643 491655 chr3L 491725 491731 4 80 5.0 1.5 3.2 1.0 88 chr3L 491643 intron klar - chr3L 491687 intron klar - chr3L 491731 intron klar - chr3L_4_490001 chr3L_490001 RAL-332 853 chr3L 494604 494619 chr3L 494670 494693 5 74 5.5 1.5 3.5 1.1 89 chr3L 494604 intron klar - chr3L 494648 intron klar - chr3L 494693 intron klar - chr3L_5_490001 chr3L_490001 RAL-332 854 chr3L 507055 507080 chr3L 507141 507152 9 80 5.0 3.0 4.0 1.8 97 chr3L 507055 intron klar - chr3L 507104 intron klar - chr3L 507152 intron klar - chr3L_9_505001 chr3L_505001 RAL-332 855 chr3L 514278 514305 chr3L 514355 514374 11 74 1.0 6.5 3.8 2.3 96 chr3L 514278 intron klar - chr3L 514326 intron klar - chr3L 514374 intron klar - chr3L_11_510001 chr3L_510001 RAL-332 856 chr3L 535054 535079 chr3L 535129 535155 14 77 4.0 6.5 5.2 2.3 101 chr3L 535054 intron klar - chr3L 535104 intron klar - chr3L 535155 intron klar - chr3L_14_535001 chr3L_535001 RAL-332 857 chr3L 563969 564003 chr3L 564148 564161 23 175 6.5 4.0 5.2 3.7 192 chr3L 563969 intron hipk + chr3L 564065 intron hipk + chr3L 564161 intron hipk + chr3L_23_560001 chr3L_560001 RAL-332 858 chr3L 642480 642501 chr3L 642571 642592 7 90 3.0 7.0 5.0 1.2 112 chr3L 642480 5` UTR CR43334 + chr3L 642536 5` UTR CR43334 + chr3L 642592 5` UTR CR43334 + chr3L_7_640001 chr3L_640001 RAL-332 859 chr3L 705244 705262 chr3L 705320 705328 13 72 8.0 2.5 5.2 2.1 84 chr3L 705244 intergenic CR44514 + chr3L 705286 intergenic CR44514 + chr3L 705328 intergenic CR44514 + chr3L_13_705001 chr3L_705001 RAL-332 860 chr3L 746498 746525 chr3L 746579 746608 16 82 4.0 3.0 3.5 3.6 110 chr3L 746498 intron hng3 - chr3L 746553 intron hng3 - chr3L 746608 intron hng3 - chr3L_16_745001 chr3L_745001 RAL-332 861 chr3L 789916 789947 chr3L 790401 790432 roo 17 482 2.0 3.5 2.8 4.5 516 chr3L 789916 intergenic not near genes chr3L 790174 intergenic not near genes chr3L 790432 intergenic not near genes chr3L_17_790001 chr3L_790001 RAL-332 862 chr3L 857999 858029 chr3L 866479 866495 Tirant 9 8475 5.0 4.5 4.8 1.6 8496 chr3L 857999 intergenic not near genes chr3L 862247 intergenic not near genes chr3L 866495 intergenic CG12502 + chr3L_9_860001 chr3L_860001 RAL-332 863 chr3L 866879 866896 chr3L 867096 867113 11 213 8.5 1.0 4.8 1.9 234 chr3L 866879 intron CG12502 + chr3L 866996 intron CG12502 + chr3L 867113 intron CG12502 + chr3L_11_865001 chr3L_865001 RAL-332 864 chr3L 875659 875693 chr3L 875744 875755 12 82 3.5 4.0 3.8 2.5 96 chr3L 875659 intron CG32479 + chr3L 875707 intron CG32479 + chr3L 875755 intron CG32479 + chr3L_12_875001 chr3L_875001 RAL-332 865 chr3L 925185 925208 chr3L 932600 932634 mdg1 11 7421 5.0 5.5 5.2 1.8 7449 chr3L 925185 intron Glut1 + chr3L 928910 intron Glut1 + chr3L 932634 intron Glut1 + chr3L_11_925001 chr3L_925001 RAL-332 866 chr3L 933913 933940 chr3L 934016 934043 11 100 4.0 3.0 3.5 2.4 130 chr3L 933913 intron Glut1 + chr3L 933978 intron Glut1 + chr3L 934043 intron Glut1 + chr3L_11_930001 chr3L_930001 RAL-332 867 chr3L 939782 939802 chr3L 940890 940912 jockey 7 1109 6.5 3.5 5.0 1.2 1130 chr3L 939782 intron Glut1 + chr3L 940347 intron Glut1 + chr3L 940912 intron Glut1 + chr3L_7_940001 chr3L_940001 RAL-332 868 chr3L 1031584 1031608 chr3L 1031659 1031662 5 68 4.0 8.5 6.2 0.7 78 chr3L 1031584 intron trio - chr3L 1031623 intron trio - chr3L 1031662 intron trio - chr3L_5_1030001 chr3L_1030001 RAL-332 869 chr3L 1047367 1047384 chr3L 1055180 1055191 412 4 7808 3.5 3.5 3.5 0.9 7824 chr3L 1047367 intron bab1 - chr3L 1051279 intron bab1 - chr3L 1055191 intron bab1 - chr3L_4_1050001 chr3L_1050001 RAL-332 870 chr3L 1154128 1154161 chr3L 1163278 1163311 roo 6 9147 5.0 2.0 3.5 1.3 9183 chr3L 1154128 intron bab2 - chr3L 1158720 intron bab2 - chr3L 1163311 intron bab2 - chr3L_6_1155001 chr3L_1155001 RAL-332 871 chr3L 1219594 1219625 chr3L 1227327 1227328 412 13 7729 4.5 4.5 4.5 2.4 7734 chr3L 1219594 intron mwh + chr3L 1223461 intron mwh + chr3L 1227328 intron mwh + chr3L_13_1220001 chr3L_1220001 RAL-332 872 chr3L 1268154 1268157 chr3L 1268341 1268344 4 187 15.0 0.0 7.5 0.5 190 chr3L 1268154 intron CG9134 + chr3L 1268249 intron CG9134 + chr3L 1268344 intron CG9134 + chr3L_4_1265001 chr3L_1265001 RAL-332 873 chr3L 1268170 1268181 chr3L 1268340 1268368 6 180 4.5 0.0 2.2 1.9 198 chr3L 1268170 intron CG9134 + chr3L 1268269 intron CG9134 + chr3L 1268368 intron CG9134 + chr3L_6_1265001 chr3L_1265001 RAL-332 874 chr3L 1347157 1347192 chr3L 1347242 1347276 23 80 6.5 9.0 7.8 2.6 119 chr3L 1347157 intron Ptp61F - chr3L 1347216 intron Ptp61F - chr3L 1347276 intron Ptp61F - chr3L_23_1345001 chr3L_1345001 RAL-332 875 chr3L 1374432 1374463 chr3L 1374509 1374524 8 72 3.5 2.0 2.8 2.1 92 chr3L 1374432 intron,intron Ptp61F -,ru + chr3L 1374478 intron,intron Ptp61F -,ru + chr3L 1374524 intron,intron Ptp61F -,ru + chr3L_8_1370001 chr3L_1370001 RAL-332 876 chr3L 1415774 1415808 chr3L 1415856 1415890 12 79 5.5 5.5 5.5 1.8 116 chr3L 1415774 intron Ptp61F - chr3L 1415832 intron Ptp61F - chr3L 1415890 intron Ptp61F - chr3L_12_1415001 chr3L_1415001 RAL-332 877 chr3L 1505995 1506033 chr3L 1513592 1513630 17.6 13 7595 3.5 3.0 3.2 3.1 7635 chr3L 1505995 intron,intron Psa +,cue - chr3L 1509812 intron,intron Psa +,cue - chr3L 1513630 intron,intron Psa +,cue - chr3L_13_1505001 chr3L_1505001 RAL-332 878 chr3L 1518125 1518157 chr3L 1518208 1518240 20 78 11.5 4.5 8.0 2.2 115 chr3L 1518125 intron Psa + chr3L 1518182 5` UTR Psa + chr3L 1518240 5` UTR Psa + chr3L_20_1515001 chr3L_1515001 RAL-332 879 chr3L 1639217 1639240 chr3L 1639398 1639421 4 179 3.5 2.0 2.8 1.1 204 chr3L 1639217 5` UTR metl - chr3L 1639319 intergenic metl -,Bgb + chr3L 1639421 intergenic metl -,Bgb + chr3L_4_1635001 chr3L_1635001 RAL-332 880 chr3L 1726636 1726647 chr3L 1726707 1726716 5 75 2.0 9.0 5.5 0.8 80 chr3L 1726636 intron drpr - chr3L 1726676 intron drpr - chr3L 1726716 intron drpr - chr3L_5_1725001 chr3L_1725001 RAL-332 881 chr3L 1738377 1738383 chr3L 1738453 1738460 4 76 4.0 5.0 4.5 0.7 83 chr3L 1738377 intergenic Gk +,CG18173 - chr3L 1738418 5` UTR Gk + chr3L 1738460 5` UTR Gk + chr3L_4_1735001 chr3L_1735001 RAL-332 882 chr3L 1912986 1913013 chr3L 1913067 1913102 21 84 4.5 6.0 5.2 3.4 116 chr3L 1912986 intergenic not near genes chr3L 1913044 intergenic not near genes chr3L 1913102 intergenic not near genes chr3L_21_1910001 chr3L_1910001 RAL-332 883 chr3L 1988838 1988870 chr3L 1989017 1989048 17 171 8.0 3.0 5.5 2.6 210 chr3L 1988838 intergenic not near genes chr3L 1988943 intergenic not near genes chr3L 1989048 intergenic not near genes chr3L_17_1985001 chr3L_1985001 RAL-332 884 chr3L 1991128 1991148 chr3L 1991198 1991208 8 71 3.5 3.0 3.2 1.9 80 chr3L 1991128 intergenic not near genes chr3L 1991168 intergenic not near genes chr3L 1991208 intergenic not near genes chr3L_8_1990001 chr3L_1990001 RAL-332 885 chr3L 2033437 2033463 chr3L 2033522 2033536 8 81 2.5 5.0 3.8 1.7 99 chr3L 2033437 intergenic not near genes chr3L 2033486 intergenic not near genes chr3L 2033536 intergenic not near genes chr3L_8_2030001 chr3L_2030001 RAL-332 886 chr3L 2139214 2139234 chr3L 2139287 2139314 10 77 5.0 5.5 5.2 1.6 100 chr3L 2139214 intron zormin - chr3L 2139264 intron zormin - chr3L 2139314 intron zormin - chr3L_10_2135001 chr3L_2135001 RAL-332 887 chr3L 2168771 2168805 chr3L 2168861 2168896 22 87 7.0 6.5 6.8 2.8 125 chr3L 2168771 exon CG15879 - chr3L 2168834 intron CG15879 - chr3L 2168896 intron CG15879 - chr3L_22_2165001 chr3L_2165001 RAL-332 888 chr3L 2302574 2302598 chr3L 2302656 2302685 12 84 1.5 4.0 2.8 3.2 111 chr3L 2302574 intergenic not near genes chr3L 2302630 intergenic not near genes chr3L 2302685 intergenic not near genes chr3L_12_2300001 chr3L_2300001 RAL-332 889 chr3L 2331584 2331616 chr3L 2331660 2331678 11 70 3.5 4.0 3.8 2.3 94 chr3L 2331584 intron MsR1 + chr3L 2331631 intron MsR1 + chr3L 2331678 intron MsR1 + chr3L_11_2330001 chr3L_2330001 RAL-332 890 chr3L 2411338 2411344 chr3L 2411418 2411423 5 79 6.5 7.0 6.8 0.6 85 chr3L 2411338 intron CG45186 + chr3L 2411380 intron CG45186 + chr3L 2411423 intron CG45186 + chr3L_5_2410001 chr3L_2410001 RAL-332 891 chr3L 2447506 2447536 chr3L 2456658 2456692 roo 18 9149 3.5 6.0 4.8 3.1 9186 chr3L 2447506 intron CG45186 + chr3L 2452099 intron CG45186 + chr3L 2456692 intron CG45186 + chr3L_18_2450001 chr3L_2450001 RAL-332 892 chr3L 2533657 2533684 chr3L 2533732 2533748 10 75 7.5 2.5 5.0 1.7 91 chr3L 2533657 intron Spn - chr3L 2533702 intron Spn - chr3L 2533748 intron Spn - chr3L_10_2530001 chr3L_2530001 RAL-332 893 chr3L 2626410 2626445 chr3L 2626534 2626555 14 120 3.5 4.0 3.8 2.9 145 chr3L 2626410 intron Pxn - chr3L 2626482 intron Pxn - chr3L 2626555 intron Pxn - chr3L_14_2625001 chr3L_2625001 RAL-332 894 chr3L 2683943 2683978 chr3L 2684019 2684045 13 71 2.5 1.0 1.8 4.6 102 chr3L 2683943 intron Fife - chr3L 2683994 intron Fife - chr3L 2684045 intron Fife - chr3L_13_2680001 chr3L_2680001 RAL-332 895 chr3L 2795727 2795749 chr3L 2795849 2795872 4 123 3.0 3.5 3.2 1.0 145 chr3L 2795727 intron CG43444 - chr3L 2795800 intron CG43444 - chr3L 2795872 intron CG43444 - chr3L_4_2795001 chr3L_2795001 RAL-332 896 chr3L 2897030 2897048 chr3L 2897203 2897217 7 172 5.0 2.0 3.5 1.6 187 chr3L 2897030 intron Shab + chr3L 2897124 intron Shab + chr3L 2897217 intron Shab + chr3L_7_2895001 chr3L_2895001 RAL-332 897 chr3L 2906059 2906097 chr3L 2906146 2906179 27 81 7.0 9.5 8.2 2.9 120 chr3L 2906059 intron Shab + chr3L 2906119 intron Shab + chr3L 2906179 intron Shab + chr3L_27_2905001 chr3L_2905001 RAL-332 898 chr3L 2927840 2927871 chr3L 2936117 2936131 Tirant 12 8273 3.5 2.5 3.0 3.0 8291 chr3L 2927840 intron Shab + chr3L 2931986 intron Shab + chr3L 2936131 intron Shab + chr3L_12_2930001 chr3L_2930001 RAL-332 899 chr3L 2974313 2974340 chr3L 2974393 2974412 11 70 1.5 7.5 4.5 2.0 99 chr3L 2974313 intergenic not near genes chr3L 2974362 intergenic not near genes chr3L 2974412 intergenic not near genes chr3L_11_2970001 chr3L_2970001 RAL-332 900 chr3L 3011913 3011927 chr3L 3011991 3011997 7 77 5.0 7.5 6.2 1.0 84 chr3L 3011913 intergenic FMRFaR + chr3L 3011955 intergenic FMRFaR + chr3L 3011997 intergenic FMRFaR + chr3L_7_3010001 chr3L_3010001 RAL-332 901 chr3L 3011932 3011939 chr3L 3011990 3012017 8 70 4.5 7.5 6.0 1.1 85 chr3L 3011932 intergenic FMRFaR + chr3L 3011974 intergenic FMRFaR + chr3L 3012017 intergenic FMRFaR + chr3L_8_3010001 chr3L_3010001 RAL-332 902 chr3L 3061287 3061311 chr3L 3069866 3069875 Tirant 5 8574 4.5 4.5 4.5 0.9 8588 chr3L 3061287 intron CG32486 - chr3L 3065581 intron CG32486 - chr3L 3069875 intron CG32486 - chr3L_5_3065001 chr3L_3065001 RAL-332 903 chr3L 3100644 3100660 chr3L 3100904 3100914 7 258 7.0 11.5 9.2 0.7 270 chr3L 3100644 intron Cht7 - chr3L 3100779 intron Cht7 - chr3L 3100914 intron Cht7 - chr3L_7_3100001 chr3L_3100001 RAL-332 904 chr3L 3165356 3165377 chr3L 3165431 3165460 12 79 6.0 5.5 5.8 1.8 104 chr3L 3165356 intron,intron Asciz -,CG32280 + chr3L 3165408 intron,intron Asciz -,CG32280 + chr3L 3165460 intron,intron Asciz -,CG32280 + chr3L_12_3165001 chr3L_3165001 RAL-332 905 chr3L 3281442 3281453 chr3L 3281932 3281942 Doc 4 493 11.5 9.0 10.2 0.4 500 chr3L 3281442 intron CG12017 + chr3L 3281692 intron CG12017 + chr3L 3281942 intron CG12017 + chr3L_4_3280001 chr3L_3280001 RAL-332 906 chr3L 3281455 3281475 chr3L 3281931 3281971 Doc 19 489 4.5 9.0 6.8 2.4 516 chr3L 3281455 intron CG12017 + chr3L 3281713 intron CG12017 + chr3L 3281971 intron CG12017 + chr3L_19_3280001 chr3L_3280001 RAL-332 907 chr3L 3285642 3285660 chr3L 3285725 3285743 5 83 3.5 1.0 2.2 1.6 101 chr3L 3285642 intron CG12017 + chr3L 3285692 intron CG12017 + chr3L 3285743 intron CG12017 + chr3L_5_3285001 chr3L_3285001 RAL-332 908 chr3L 3439589 3439601 chr3L 3439676 3439688 4 87 7.0 7.0 7.0 0.5 99 chr3L 3439589 intron eIF5B - chr3L 3439638 intron eIF5B - chr3L 3439688 intron eIF5B - chr3L_4_3435001 chr3L_3435001 RAL-332 909 chr3L 3449287 3449293 chr3L 3449347 3449354 5 62 0.0 5.5 2.8 1.3 67 chr3L 3449287 intron eIF5B - chr3L 3449320 intron eIF5B - chr3L 3449354 intron eIF5B - chr3L_5_3445001 chr3L_3445001 RAL-332 910 chr3L 3475073 3475113 chr3L 3475517 3475556 jockey 21 441 2.5 4.5 3.5 4.7 483 chr3L 3475073 intron CG42324 + chr3L 3475314 intron CG42324 + chr3L 3475556 intron CG42324 + chr3L_21_3475001 chr3L_3475001 RAL-332 911 chr3L 3487067 3487075 chr3L 3487144 3487153 4 78 8.5 4.0 6.2 0.6 86 chr3L 3487067 intron CG42324 + chr3L 3487110 intron CG42324 + chr3L 3487153 intron CG42324 + chr3L_4_3485001 chr3L_3485001 RAL-332 912 chr3L 3487078 3487093 chr3L 3487138 3487170 6 73 6.0 2.0 4.0 1.2 92 chr3L 3487078 intron CG42324 + chr3L 3487124 intron CG42324 + chr3L 3487170 intron CG42324 + chr3L_6_3485001 chr3L_3485001 RAL-332 913 chr3L 3494751 3494778 chr3L 3494829 3494841 13 75 6.0 5.5 5.8 1.9 90 chr3L 3494751 intron CG42324 + chr3L 3494796 intron CG42324 + chr3L 3494841 intron CG42324 + chr3L_13_3490001 chr3L_3490001 RAL-332 914 chr3L 3565939 3565970 chr3L 3566014 3566028 13 72 4.5 3.5 4.0 2.6 89 chr3L 3565939 intron Eip63E + chr3L 3565984 intron Eip63E + chr3L 3566028 intron Eip63E + chr3L_13_3565001 chr3L_3565001 RAL-332 915 chr3L 3601298 3601332 chr3L 3606608 3606643 copia 14 5306 4.5 4.5 4.5 2.5 5345 chr3L 3601298 intron Eip63E + chr3L 3603970 intron Eip63E + chr3L 3606643 intron Eip63E + chr3L_14_3600001 chr3L_3600001 RAL-332 916 chr3L 3795594 3795626 chr3L 3795671 3795703 6 76 3.5 4.0 3.8 1.2 109 chr3L 3795594 intron CG32264 - chr3L 3795648 intron CG32264 - chr3L 3795703 intron CG32264 - chr3L_6_3795001 chr3L_3795001 RAL-332 917 chr3L 3815052 3815083 chr3L 3815133 3815149 8 77 3.0 1.0 2.0 2.7 97 chr3L 3815052 intron,3` UTR Scsalpha +,CR43932 - chr3L 3815100 intron,3` UTR Scsalpha +,CR43932 - chr3L 3815149 intron,intron Scsalpha +,CR43932 - chr3L_8_3815001 chr3L_3815001 RAL-332 918 chr3L 3845568 3845574 chr3L 3845662 3845667 4 94 7.0 3.5 5.2 0.6 99 chr3L 3845568 intergenic not near genes chr3L 3845618 intergenic not near genes chr3L 3845667 intergenic not near genes chr3L_4_3845001 chr3L_3845001 RAL-332 919 chr3L 3890961 3890994 chr3L 3891042 3891064 7 78 4.0 0.5 2.2 2.2 103 chr3L 3890961 intergenic not near genes chr3L 3891012 intergenic not near genes chr3L 3891064 intergenic not near genes chr3L_7_3890001 chr3L_3890001 RAL-332 920 chr3L 3914270 3914282 chr3L 3914437 3914443 6 165 10.0 5.5 7.8 0.7 173 chr3L 3914270 intron Eip63F-1 - chr3L 3914356 intron Eip63F-1 - chr3L 3914443 intron Eip63F-1 - chr3L_6_3910001 chr3L_3910001 RAL-332 921 chr3L 3914284 3914305 chr3L 3914435 3914472 12 159 5.5 5.5 5.5 1.8 188 chr3L 3914284 intron Eip63F-1 - chr3L 3914378 intron Eip63F-1 - chr3L 3914472 intron Eip63F-1 - chr3L_12_3910001 chr3L_3910001 RAL-332 922 chr3L 4098385 4098396 chr3L 4098588 4098591 5 202 6.0 3.0 4.5 0.9 206 chr3L 4098385 intron CG14995 - chr3L 4098488 intron CG14995 - chr3L 4098591 intron CG14995 - chr3L_5_4095001 chr3L_4095001 RAL-332 923 chr3L 4098398 4098407 chr3L 4098586 4098611 4 193 3.5 2.5 3.0 1.0 213 chr3L 4098398 intron CG14995 - chr3L 4098504 intron CG14995 - chr3L 4098611 intron CG14995 - chr3L_4_4095001 chr3L_4095001 RAL-332 924 chr3L 4170090 4170113 chr3L 4170257 4170280 6 166 1.0 3.0 2.0 2.0 190 chr3L 4170090 intergenic Ero1L + chr3L 4170185 intergenic Ero1L + chr3L 4170280 intergenic Ero1L + chr3L_6_4170001 chr3L_4170001 RAL-332 925 chr3L 4342425 4342441 chr3L 4342488 4342516 14 71 7.0 5.5 6.2 1.9 91 chr3L 4342425 intron Cip4 - chr3L 4342470 intron Cip4 - chr3L 4342516 intron Cip4 - chr3L_14_4340001 chr3L_4340001 RAL-332 926 chr3L 4347830 4347860 chr3L 4347916 4347944 13 84 5.0 9.5 7.2 1.6 114 chr3L 4347830 intron Cip4 - chr3L 4347887 intron Cip4 - chr3L 4347944 intron Cip4 - chr3L_13_4345001 chr3L_4345001 RAL-332 927 chr3L 4364205 4364232 chr3L 4364294 4364321 6 86 0.5 1.0 0.8 3.3 116 chr3L 4364205 intergenic Cip4 -,mRpS6 + chr3L 4364263 intergenic Cip4 -,mRpS6 + chr3L 4364321 intergenic Cip4 -,mRpS6 + chr3L_6_4360001 chr3L_4360001 RAL-332 928 chr3L 4382314 4382338 chr3L 4382412 4382422 11 93 6.5 1.0 3.8 2.3 108 chr3L 4382314 intergenic not near genes chr3L 4382368 intergenic not near genes chr3L 4382422 intergenic not near genes chr3L_11_4380001 chr3L_4380001 RAL-332 929 chr3L 4393066 4393070 chr3L 4393137 4393149 4 76 0.0 11.0 5.5 0.6 83 chr3L 4393066 intron slow + chr3L 4393108 intron slow + chr3L 4393149 intron slow + chr3L_4_4390001 chr3L_4390001 RAL-332 930 chr3L 4416023 4416053 chr3L 4416105 4416132 14 77 12.5 11.5 12.0 1.1 109 chr3L 4416023 intron DOR + chr3L 4416078 intron DOR + chr3L 4416132 intron DOR + chr3L_14_4415001 chr3L_4415001 RAL-332 931 chr3L 4441808 4441819 chr3L 4441895 4441901 4 84 4.5 4.0 4.2 0.8 93 chr3L 4441808 intergenic not near genes chr3L 4441854 intergenic not near genes chr3L 4441901 intergenic not near genes chr3L_4_4440001 chr3L_4440001 RAL-332 932 chr3L 4478150 4478172 chr3L 4478222 4478248 8 75 4.0 3.5 3.8 1.7 98 chr3L 4478150 intergenic not near genes chr3L 4478199 intergenic not near genes chr3L 4478248 intergenic not near genes chr3L_8_4475001 chr3L_4475001 RAL-332 933 chr3L 4597221 4597246 chr3L 4597294 4597325 14 74 5.5 2.5 4.0 2.8 104 chr3L 4597221 intron Src64B - chr3L 4597273 intron Src64B - chr3L 4597325 intron Src64B - chr3L_14_4595001 chr3L_4595001 RAL-332 934 chr3L 4703796 4703804 chr3L 4703885 4703894 5 89 9.0 3.5 6.2 0.7 98 chr3L 4703796 intron,5` UTR RhoGEF64C +,CR43879 + chr3L 4703845 intron,5` UTR RhoGEF64C +,CR43879 + chr3L 4703894 intron,5` UTR RhoGEF64C +,CR43879 + chr3L_5_4700001 chr3L_4700001 RAL-332 935 chr3L 4703805 4703826 chr3L 4703881 4703916 17 83 4.5 3.0 3.8 3.5 111 chr3L 4703805 intron,5` UTR RhoGEF64C +,CR43879 + chr3L 4703860 intron,5` UTR RhoGEF64C +,CR43879 + chr3L 4703916 intron,5` UTR RhoGEF64C +,CR43879 + chr3L_17_4700001 chr3L_4700001 RAL-332 936 chr3L 4726432 4726460 chr3L 4726513 4726531 10 74 12.0 2.5 7.2 1.2 99 chr3L 4726432 intron RhoGEF64C + chr3L 4726482 intron RhoGEF64C + chr3L 4726531 intron RhoGEF64C + chr3L_10_4725001 chr3L_4725001 RAL-332 937 chr3L 4842772 4842775 chr3L 24763633 24763634 5 19920861 14.5 4.5 9.5 0.5 19920862 chr3L 4842772 intergenic not near genes chr3L 14803203 intron gnu - chr3L 24763634 intron scro + chr3L_5_14800001 chr3L_14800001 RAL-332 938 chr3L 4858303 4858335 chr3L 4858393 4858412 10 86 6.0 9.5 7.8 1.1 109 chr3L 4858303 intergenic not near genes chr3L 4858358 intergenic not near genes chr3L 4858412 intergenic not near genes chr3L_10_4855001 chr3L_4855001 RAL-332 939 chr3L 4901145 4901159 chr3L 4907321 4907349 diver 4 6182 1.5 3.0 2.2 1.2 6204 chr3L 4901145 intergenic CG13704 + chr3L 4904247 intergenic not near genes chr3L 4907349 intergenic not near genes chr3L_4_4900001 chr3L_4900001 RAL-332 940 chr3L 4959631 4959671 chr3L 4960082 4960110 5 439 0.0 4.5 2.2 1.6 479 chr3L 4959631 intron Con - chr3L 4959870 intron Con - chr3L 4960110 intron Con - chr3L_5_4955001 chr3L_4955001 RAL-332 941 chr3L 4990746 4990759 chr3L 4990860 4990871 8 111 14.0 6.0 10.0 0.7 125 chr3L 4990746 intron Con - chr3L 4990808 intron Con - chr3L 4990871 intron Con - chr3L_8_4990001 chr3L_4990001 RAL-332 942 chr3L 4990763 4990779 chr3L 4990859 4990890 8 101 6.0 6.0 6.0 1.1 127 chr3L 4990763 intron Con - chr3L 4990826 intron Con - chr3L 4990890 intron Con - chr3L_8_4990001 chr3L_4990001 RAL-332 943 chr3L 5034159 5034190 chr3L 5043311 5043337 roo 10 9150 2.5 1.5 2.0 3.3 9178 chr3L 5034159 intron Con - chr3L 5038748 intron Con - chr3L 5043337 intron Con - chr3L_10_5035001 chr3L_5035001 RAL-332 944 chr3L 5054946 5054969 chr3L 5055023 5055048 8 74 7.5 9.0 8.2 0.9 102 chr3L 5054946 intron Con - chr3L 5054997 intron Con - chr3L 5055048 intron Con - chr3L_8_5050001 chr3L_5050001 RAL-332 945 chr3L 5101215 5101230 chr3L 5101281 5101307 7 73 1.0 1.5 1.2 3.2 92 chr3L 5101215 intergenic not near genes chr3L 5101261 intergenic not near genes chr3L 5101307 intergenic not near genes chr3L_7_5100001 chr3L_5100001 RAL-332 946 chr3L 5104487 5104507 chr3L 5124621 5124641 4 20134 1.0 6.0 3.5 0.9 20154 chr3L 5104487 intergenic not near genes chr3L 5114564 intergenic not near genes chr3L 5124641 intergenic not near genes chr3L_4_5110001 chr3L_5110001 RAL-332 947 chr3L 5130931 5130960 chr3L 5131033 5131054 13 96 4.5 2.5 3.5 2.9 123 chr3L 5130931 intergenic not near genes chr3L 5130992 intergenic not near genes chr3L 5131054 intergenic CG15212 + chr3L_13_5130001 chr3L_5130001 RAL-332 948 chr3L 5388199 5388232 chr3L 5388523 5388556 25 320 6.0 4.5 5.2 4.0 357 chr3L 5388199 intergenic not near genes chr3L 5388378 intergenic not near genes chr3L 5388556 intergenic not near genes chr3L_25_5385001 chr3L_5385001 RAL-332 949 chr3L 5449535 5449560 chr3L 5449614 5449639 6 76 2.0 5.0 3.5 1.3 104 chr3L 5449535 intergenic not near genes chr3L 5449587 intergenic not near genes chr3L 5449639 intergenic not near genes chr3L_6_5445001 chr3L_5445001 RAL-332 950 chr3L 5458058 5458086 chr3L 5466660 5466666 Max-element 5 8590 6.5 8.0 7.2 0.6 8608 chr3L 5458058 intergenic not near genes chr3L 5462362 intergenic not near genes chr3L 5466666 intergenic not near genes chr3L_5_5460001 chr3L_5460001 RAL-332 951 chr3L 5482941 5483089 chr3L 5483150 5483208 11 138 4.0 2.5 3.2 2.6 267 chr3L 5482941 exon CG4835 + chr3L 5483074 exon CG4835 + chr3L 5483208 exon CG4835 + chr3L_11_5480001 chr3L_5480001 RAL-332 952 chr3L 5498415 5498434 chr3L 5498485 5498495 8 71 1.0 7.5 4.2 1.5 80 chr3L 5498415 exon blanks - chr3L 5498455 exon blanks - chr3L 5498495 exon blanks - chr3L_8_5495001 chr3L_5495001 RAL-332 953 chr3L 5526965 5526992 chr3L 5527050 5527052 6 78 7.0 0.0 3.5 1.3 87 chr3L 5526965 intron Lkr - chr3L 5527008 intron Lkr - chr3L 5527052 intron Lkr - chr3L_6_5525001 chr3L_5525001 RAL-332 954 chr3L 5910051 5910062 chr3L 5910274 5910298 pogo 5 232 2.0 3.5 2.8 1.3 247 chr3L 5910051 intron CG13288 + chr3L 5910174 intron CG13288 + chr3L 5910298 intron CG13288 + chr3L_5_5910001 chr3L_5910001 RAL-332 955 chr3L 5926321 5926351 chr3L 5926503 5926519 BS 14 175 4.5 6.5 5.5 2.2 198 chr3L 5926321 intron Vap-33B + chr3L 5926420 intron Vap-33B + chr3L 5926519 intron Vap-33B + chr3L_14_5925001 chr3L_5925001 RAL-332 956 chr3L 6001691 6001717 chr3L 6004390 6004417 jockey 4 2700 4.0 0.5 2.2 1.2 2726 chr3L 6001691 intron PVRAP + chr3L 6003054 intron PVRAP + chr3L 6004417 intron PVRAP + chr3L_4_6000001 chr3L_6000001 RAL-332 957 chr3L 6022241 6022271 chr3L 6022325 6022337 17 80 3.5 2.5 3.0 4.2 96 chr3L 6022241 intron PVRAP + chr3L 6022289 intron PVRAP + chr3L 6022337 intron PVRAP + chr3L_17_6020001 chr3L_6020001 RAL-332 958 chr3L 6040271 6040301 chr3L 6040351 6040381 8 72 1.0 1.5 1.2 3.6 110 chr3L 6040271 intergenic Jon65Aiv + chr3L 6040326 intergenic Jon65Aiv + chr3L 6040381 intergenic Jon65Aiv + chr3L_8_6040001 chr3L_6040001 RAL-332 959 chr3L 6040366 6040391 chr3L 6042722 6042727 Doc 7 2352 2.0 3.5 2.8 1.8 2361 chr3L 6040366 intergenic Jon65Aiv + chr3L 6041546 intergenic not near genes chr3L 6042727 intergenic not near genes chr3L_7_6040001 chr3L_6040001 RAL-332 960 chr3L 6052652 6052663 chr3L 6052737 6052741 5 82 9.0 14.5 11.8 0.4 89 chr3L 6052652 exon Jon65Aii + chr3L 6052696 intron Jon65Aii + chr3L 6052741 exon Jon65Aii + chr3L_5_6050001 chr3L_6050001 RAL-332 961 chr3L 6063939 6063966 chr3L 6064023 6064027 13 80 5.5 3.5 4.5 2.4 88 chr3L 6063939 intergenic not near genes chr3L 6063983 intergenic not near genes chr3L 6064027 intergenic not near genes chr3L_13_6060001 chr3L_6060001 RAL-332 962 chr3L 6220913 6220943 chr3L 6230065 6230095 roo 20 9150 8.5 6.5 7.5 2.4 9182 chr3L 6220913 5` UTR pncr008:3L + chr3L 6225504 intergenic not near genes chr3L 6230095 intergenic not near genes chr3L_20_6225001 chr3L_6225001 RAL-332 963 chr3L 6335011 6335032 chr3L 6335481 6335503 297 5 470 4.5 5.5 5.0 0.8 492 chr3L 6335011 intron CG13300 - chr3L 6335257 intron CG13300 - chr3L 6335503 intron CG13300 - chr3L_5_6335001 chr3L_6335001 RAL-332 964 chr3L 6372443 6372462 chr3L 6372593 6372613 8 149 2.0 5.5 3.8 1.7 170 chr3L 6372443 intergenic not near genes chr3L 6372528 intergenic not near genes chr3L 6372613 intergenic not near genes chr3L_8_6370001 chr3L_6370001 RAL-332 965 chr3L 6405672 6405692 chr3L 6432126 6432138 roo 4 26452 1.0 3.0 2.0 1.3 26466 chr3L 6405672 intron CG42747 + chr3L 6418905 intron CG42747 + chr3L 6432138 intron CG42747 + chr3L_4_6415001 chr3L_6415001 RAL-332 966 chr3L 6642873 6642888 chr3L 6642948 6642968 4 77 0.0 0.0 0.0 4.0 95 chr3L 6642873 intergenic CR45239 + chr3L 6642920 intergenic CR45239 + chr3L 6642968 intergenic CR45239 + chr3L_4_6640001 chr3L_6640001 RAL-332 967 chr3L 6668983 6668997 chr3L 6669045 6669078 8 70 3.5 1.5 2.5 2.3 95 chr3L 6668983 intergenic not near genes chr3L 6669030 intergenic not near genes chr3L 6669078 intergenic not near genes chr3L_8_6665001 chr3L_6665001 RAL-332 968 chr3L 6855929 6855949 chr3L 6860703 6860733 Doc 10 4782 5.5 5.5 5.5 1.5 4804 chr3L 6855929 intergenic not near genes chr3L 6858331 intergenic not near genes chr3L 6860733 intergenic not near genes chr3L_10_6855001 chr3L_6855001 RAL-332 969 chr3L 6887518 6887529 chr3L 6895010 6895021 roo 4 7492 9.5 2.5 6.0 0.6 7503 chr3L 6887518 intergenic not near genes chr3L 6891270 intergenic not near genes chr3L 6895021 intergenic not near genes chr3L_4_6890001 chr3L_6890001 RAL-332 970 chr3L 6887531 6887550 chr3L 6895008 6895042 roo 7 7486 6.0 2.5 4.2 1.3 7511 chr3L 6887531 intergenic not near genes chr3L 6891286 intergenic not near genes chr3L 6895042 intergenic not near genes chr3L_7_6890001 chr3L_6890001 RAL-332 971 chr3L 6990725 6990737 chr3L 6990804 6990817 5 77 5.5 1.0 3.2 1.2 92 chr3L 6990725 5` UTR bin + chr3L 6990771 5` UTR bin + chr3L 6990817 5` UTR bin + chr3L_5_6990001 chr3L_6990001 RAL-332 972 chr3L 7033053 7033087 chr3L 7033150 7033165 14 91 3.5 4.0 3.8 2.9 112 chr3L 7033053 intron Mp + chr3L 7033109 intron Mp + chr3L 7033165 intron Mp + chr3L_14_7030001 chr3L_7030001 RAL-332 973 chr3L 7079606 7079636 chr3L 7079683 7079698 10 74 1.5 2.0 1.8 3.6 92 chr3L 7079606 intergenic not near genes chr3L 7079652 intergenic not near genes chr3L 7079698 intergenic not near genes chr3L_10_7075001 chr3L_7075001 RAL-332 974 chr3L 7091532 7091552 chr3L 7091608 7091627 6 75 7.5 3.0 5.2 1.0 95 chr3L 7091532 intergenic not near genes chr3L 7091580 intergenic not near genes chr3L 7091627 intergenic not near genes chr3L_6_7090001 chr3L_7090001 RAL-332 975 chr3L 7091553 7091559 chr3L 7091607 7091619 7 65 6.5 3.0 4.8 1.2 66 chr3L 7091553 intergenic not near genes chr3L 7091586 intergenic not near genes chr3L 7091619 intergenic not near genes chr3L_7_7090001 chr3L_7090001 RAL-332 976 chr3L 7112597 7112618 chr3L 7112673 7112687 9 79 1.0 5.5 3.2 2.1 90 chr3L 7112597 intron form3 + chr3L 7112642 intron form3 + chr3L 7112687 intron form3 + chr3L_9_7110001 chr3L_7110001 RAL-332 977 chr3L 7150878 7150900 chr3L 7150954 7150976 11 73 2.0 2.5 2.2 3.4 98 chr3L 7150878 intron corn - chr3L 7150927 intron corn - chr3L 7150976 intron corn - chr3L_11_7150001 chr3L_7150001 RAL-332 978 chr3L 7285454 7285473 chr3L 7285532 7285551 13 77 3.0 6.0 4.5 2.4 97 chr3L 7285454 intron unc-13-4A - chr3L 7285502 intron unc-13-4A - chr3L 7285551 intron unc-13-4A - chr3L_13_7285001 chr3L_7285001 RAL-332 979 chr3L 7358320 7358325 chr3L 7359580 7359602 5 1275 33.5 32.5 33.0 0.1 1282 chr3L 7358320 exon pst - chr3L 7358961 exon pst - chr3L 7359602 exon pst - chr3L_5_7355001 chr3L_7355001 RAL-332 980 chr3L 7377331 7377345 chr3L 7380420 7380449 297 5 3101 2.5 3.0 2.8 1.3 3118 chr3L 7377331 intron SMSr - chr3L 7378890 intron SMSr - chr3L 7380449 intron SMSr - chr3L_5_7375001 chr3L_7375001 RAL-332 981 chr3L 7450686 7450709 chr3L 7450769 7450792 5 79 5.5 0.5 3.0 1.2 106 chr3L 7450686 intron CG42458 + chr3L 7450739 intron CG42458 + chr3L 7450792 intron CG42458 + chr3L_5_7450001 chr3L_7450001 RAL-332 982 chr3L 7488868 7488892 chr3L 7488948 7488958 5 77 0.5 2.0 1.2 2.3 90 chr3L 7488868 intergenic not near genes chr3L 7488913 intergenic not near genes chr3L 7488958 intergenic not near genes chr3L_5_7485001 chr3L_7485001 RAL-332 983 chr3L 7505415 7505435 chr3L 7505491 7505498 6 70 3.5 1.5 2.5 1.7 83 chr3L 7505415 intergenic CG7548 - chr3L 7505456 intergenic CG7548 - chr3L 7505498 intergenic CG7548 - chr3L_6_7505001 chr3L_7505001 RAL-332 984 chr3L 7591152 7591182 chr3L 7591235 7591255 13 74 2.5 3.0 2.8 3.4 103 chr3L 7591152 intergenic CG7716 - chr3L 7591204 intergenic CG7716 - chr3L 7591255 intergenic CG7716 - chr3L_13_7590001 chr3L_7590001 RAL-332 985 chr3L 7744707 7744716 chr3L 7744799 7744804 5 91 8.0 2.0 5.0 0.8 97 chr3L 7744707 intron CG32373 + chr3L 7744756 intron CG32373 + chr3L 7744804 intron CG32373 + chr3L_5_7740001 chr3L_7740001 RAL-332 986 chr3L 7744718 7744733 chr3L 7744794 7744825 7 82 4.0 2.0 3.0 1.8 107 chr3L 7744718 intron CG32373 + chr3L 7744772 intron CG32373 + chr3L 7744825 intron CG32373 + chr3L_7_7740001 chr3L_7740001 RAL-332 987 chr3L 7749470 7749471 chr3L 11777678 11777678 12 4028208 6.5 16.0 11.2 1.0 4028208 chr3L 7749470 intron,3` UTR CG32373 +,CG13685 + chr3L 9763574 5` UTR CG8177 + chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_12_9760001 chr3L_9760001 RAL-332 988 chr3L 7793712 7793743 chr3L 7800764 7800795 297 7 7050 2.0 4.5 3.2 1.7 7083 chr3L 7793712 intron CG32369 - chr3L 7797254 intron CG32369 - chr3L 7800795 intron CG32369 - chr3L_7_7795001 chr3L_7795001 RAL-332 989 chr3L 7862517 7862535 chr3L 7862899 7862914 5 380 3.0 3.0 3.0 1.2 397 chr3L 7862517 intron Pdp1 - chr3L 7862716 intron Pdp1 - chr3L 7862914 intron Pdp1 - chr3L_5_7860001 chr3L_7860001 RAL-332 990 chr3L 7865578 7865584 chr3L 7865705 7865714 4 130 2.5 1.5 2.0 1.3 136 chr3L 7865578 intron Pdp1 - chr3L 7865646 intron Pdp1 - chr3L 7865714 intron Pdp1 - chr3L_4_7865001 chr3L_7865001 RAL-332 991 chr3L 7886512 7886547 chr3L 7889030 7889064 Stalker4 10 2513 1.0 2.5 1.8 3.6 2552 chr3L 7886512 intron CG32365 + chr3L 7887788 intron CG32365 + chr3L 7889064 intron CG32365 + chr3L_10_7885001 chr3L_7885001 RAL-332 992 chr3L 7916834 7916859 chr3L 7926003 7926030 roo 5 9169 2.0 1.5 1.8 1.8 9196 chr3L 7916834 3` UTR syd - chr3L 7921432 intron syd - chr3L 7926030 3` UTR syd - chr3L_5_7920001 chr3L_7920001 RAL-332 993 chr3L 7982089 7982094 chr3L 7982344 7982358 4 256 4.0 6.0 5.0 0.7 269 chr3L 7982089 intron nmo + chr3L 7982224 intron nmo + chr3L 7982358 intron nmo + chr3L_4_7980001 chr3L_7980001 RAL-332 994 chr3L 7982097 7982101 chr3L 7982342 7982368 5 255 2.5 6.0 4.2 1.0 271 chr3L 7982097 intron nmo + chr3L 7982232 intron nmo + chr3L 7982368 intron nmo + chr3L_5_7980001 chr3L_7980001 RAL-332 995 chr3L 7985367 7985398 chr3L 7987690 7987719 NOF 10 2322 4.0 2.5 3.2 2.4 2352 chr3L 7985367 intron nmo + chr3L 7986543 intron nmo + chr3L 7987719 intron nmo + chr3L_10_7985001 chr3L_7985001 RAL-332 996 chr3L 8062853 8062973 chr3L 8062932 8063104 7 116 3.0 3.0 3.0 1.8 251 chr3L 8062853 intergenic not near genes chr3L 8062978 intergenic not near genes chr3L 8063104 intergenic not near genes chr3L_7_8060001 chr3L_8060001 RAL-332 997 chr3L 8295797 8295806 chr3L 8295953 8295956 4 155 10.5 6.0 8.2 0.4 159 chr3L 8295797 intergenic CG7201 - chr3L 8295876 intergenic not near genes chr3L 8295956 intergenic not near genes chr3L_4_8295001 chr3L_8295001 RAL-332 998 chr3L 8295807 8295826 chr3L 8295950 8295970 8 151 2.5 6.0 4.2 1.5 163 chr3L 8295807 intergenic CG7201 - chr3L 8295888 intergenic not near genes chr3L 8295970 intergenic not near genes chr3L_8_8295001 chr3L_8295001 RAL-332 999 chr3L 8376649 8376678 chr3L 8376867 8376891 19 215 2.5 7.5 5.0 3.2 242 chr3L 8376649 intron ImpE1 + chr3L 8376770 intron ImpE1 + chr3L 8376891 intron ImpE1 + chr3L_19_8375001 chr3L_8375001 RAL-332 1000 chr3L 8481798 8481806 chr3L 8490941 8490949 roo 5 9146 4.0 10.5 7.2 0.6 9151 chr3L 8481798 intron CG43163 - chr3L 8486374 intron CG43163 - chr3L 8490949 intron CG43163 - chr3L_5_8485001 chr3L_8485001 RAL-332 1001 chr3L 8498300 8498330 chr3L 8505764 8505780 blood 5 7461 3.0 2.5 2.8 1.3 7480 chr3L 8498300 intron CG43163 - chr3L 8502040 intron CG43163 - chr3L 8505780 intron CG43163 - chr3L_5_8500001 chr3L_8500001 RAL-332 1002 chr3L 8752415 8752445 chr3L 8752603 8752634 5 188 0.0 3.5 1.8 1.8 219 chr3L 8752415 intergenic not near genes chr3L 8752524 intergenic not near genes chr3L 8752634 intergenic not near genes chr3L_5_8750001 chr3L_8750001 RAL-332 1003 chr3L 8791285 8791298 chr3L 8796693 8796705 I-element 5 5414 11.5 0.0 5.8 0.7 5420 chr3L 8791285 exon Fhos + chr3L 8793995 intron Fhos + chr3L 8796705 intron Fhos + chr3L_5_8790001 chr3L_8790001 RAL-332 1004 chr3L 9003955 9003977 chr3L 9004031 9004040 15 79 6.0 3.5 4.8 2.6 85 chr3L 9003955 intergenic not near genes chr3L 9003998 intergenic not near genes chr3L 9004040 intergenic not near genes chr3L_15_9000001 chr3L_9000001 RAL-332 1005 chr3L 9013690 9013694 chr3L 18417066 18417066 5 9403374 38.5 32.5 35.5 0.1 9403376 chr3L 9013690 intron Doc2 - chr3L 13715378 intron bru-3 - chr3L 18417066 intergenic not near genes chr3L_5_13715001 chr3L_13715001 RAL-332 1006 chr3L 9024521 9024532 chr3L 9024597 9024612 4 79 2.0 4.0 3.0 1.0 91 chr3L 9024521 intergenic not near genes chr3L 9024566 intergenic not near genes chr3L 9024612 intergenic not near genes chr3L_4_9020001 chr3L_9020001 RAL-332 1007 chr3L 9076934 9076955 chr3L 9084485 9084514 412 14 7554 7.5 8.0 7.8 1.6 7580 chr3L 9076934 exon Tequila + chr3L 9080724 intron Tequila + chr3L 9084514 exon Tequila + chr3L_14_9080001 chr3L_9080001 RAL-332 1008 chr3L 9130562 9130579 chr3L 9134318 9134340 412 9 3758 10.5 9.0 9.8 0.8 3778 chr3L 9130562 intergenic bol - chr3L 9132451 intergenic not near genes chr3L 9134340 intergenic Dhpr + chr3L_9_9130001 chr3L_9130001 RAL-332 1009 chr3L 9166761 9166772 chr3L 9166836 9166859 7 83 7.0 7.0 7.0 0.9 98 chr3L 9166761 intron Rdl - chr3L 9166810 intron Rdl - chr3L 9166859 intron Rdl - chr3L_7_9165001 chr3L_9165001 RAL-332 1010 chr3L 9219250 9219280 chr3L 9219911 9219937 jockey 14 663 8.5 6.0 7.2 1.7 687 chr3L 9219250 intergenic not near genes chr3L 9219594 intergenic not near genes chr3L 9219937 intergenic not near genes chr3L_14_9215001 chr3L_9215001 RAL-332 1011 chr3L 9254533 9254544 chr3L 9254819 9254835 4 286 4.5 3.5 4.0 0.8 302 chr3L 9254533 intron GluRIB + chr3L 9254684 intron GluRIB + chr3L 9254835 intron GluRIB + chr3L_4_9250001 chr3L_9250001 RAL-332 1012 chr3L 9270621 9270629 chr3L 9278376 9278383 roo 5 7755 7.5 8.0 7.8 0.6 7762 chr3L 9270621 intron GluRIB + chr3L 9274502 intron GluRIB + chr3L 9278383 intron GluRIB + chr3L_5_9270001 chr3L_9270001 RAL-332 1013 chr3L 9270635 9270650 chr3L 9278370 9278403 roo 8 7747 5.5 6.0 5.8 1.2 7768 chr3L 9270635 intron GluRIB + chr3L 9274519 intron GluRIB + chr3L 9278403 exon GluRIB + chr3L_8_9270001 chr3L_9270001 RAL-332 1014 chr3L 9313026 9313027 chr3L 11777678 11777678 9 2464652 21.0 16.0 18.5 0.5 2464652 chr3L 9313026 intergenic not near genes chr3L 10545352 intron A2bp1 + chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_9_10545001 chr3L_10545001 RAL-332 1015 chr3L 9359595 9359622 chr3L 9359679 9359697 8 85 3.0 1.5 2.2 2.5 102 chr3L 9359595 3` UTR CG32039 + chr3L 9359646 3` UTR CG32039 + chr3L 9359697 3` UTR CG32039 + chr3L_8_9355001 chr3L_9355001 RAL-332 1016 chr3L 9428680 9428716 chr3L 9428760 9428796 14 77 5.0 7.0 6.0 2.0 116 chr3L 9428680 intergenic Shc +,RpS17 - chr3L 9428738 intergenic RpS17 -,Shc + chr3L 9428796 3` UTR RpS17 - chr3L_14_9425001 chr3L_9425001 RAL-332 1017 chr3L 9443509 9443538 chr3L 9445300 9445313 S-element 9 1785 2.0 0.0 1.0 4.5 1804 chr3L 9443509 intron CG33926 + chr3L 9444411 intron CG33926 + chr3L 9445313 intron CG33926 + chr3L_9_9440001 chr3L_9440001 RAL-332 1018 chr3L 9501709 9501727 chr3L 9502195 9502208 roo 4 482 4.0 4.5 4.2 0.8 499 chr3L 9501709 intron path - chr3L 9501958 intron path - chr3L 9502208 intron path - chr3L_4_9500001 chr3L_9500001 RAL-332 1019 chr3L 9502629 9502644 chr3L 9502702 9502715 4 74 1.0 1.0 1.0 2.0 86 chr3L 9502629 intron path - chr3L 9502672 intron path - chr3L 9502715 intron path - chr3L_4_9500001 chr3L_9500001 RAL-332 1020 chr3L 9575914 9575934 chr3L 9580992 9581012 jockey 10 5074 11.0 7.0 9.0 1.0 5098 chr3L 9575914 intron CG42673 + chr3L 9578463 intron CG42673 + chr3L 9581012 intron CG42673 + chr3L_10_9575001 chr3L_9575001 RAL-332 1021 chr3L 9575935 9575949 chr3L 9580991 9581004 jockey 7 5065 3.5 7.0 5.2 1.1 5069 chr3L 9575935 intron CG42673 + chr3L 9578470 intron CG42673 + chr3L 9581004 intron CG42673 + chr3L_7_9575001 chr3L_9575001 RAL-332 1022 chr3L 9646477 9646479 chr3L 9646599 9646604 4 122 10.5 0.0 5.2 0.6 127 chr3L 9646477 intron,intron fry -,CG33696 + chr3L 9646540 intron,intron fry -,CG33696 + chr3L 9646604 intron,intron fry -,CG33696 + chr3L_4_9645001 chr3L_9645001 RAL-332 1023 chr3L 9646810 9646825 chr3L 9646908 9646923 8 97 2.5 3.5 3.0 2.0 113 chr3L 9646810 intron,intron fry -,CG33696 + chr3L 9646866 intron,intron fry -,CG33696 + chr3L 9646923 intron,intron fry -,CG33696 + chr3L_8_9645001 chr3L_9645001 RAL-332 1024 chr3L 9732426 9732451 chr3L 9732501 9732511 11 75 3.0 3.5 3.2 2.6 85 chr3L 9732426 exon CG6749 - chr3L 9732468 intron CG6749 - chr3L 9732511 intron CG6749 - chr3L_11_9730001 chr3L_9730001 RAL-332 1025 chr3L 9745497 9745513 chr3L 9745572 9745584 11 78 1.5 4.0 2.8 2.9 87 chr3L 9745497 intron CG42268 - chr3L 9745540 intron CG42268 - chr3L 9745584 intron CG42268 - chr3L_11_9745001 chr3L_9745001 RAL-332 1026 chr3L 9829049 9829079 chr3L 9829130 9829147 14 78 4.5 6.0 5.2 2.3 98 chr3L 9829049 intron CG43897 + chr3L 9829098 intron CG43897 + chr3L 9829147 intron CG43897 + chr3L_14_9825001 chr3L_9825001 RAL-332 1027 chr3L 9918885 9918909 chr3L 9918974 9919001 10 90 9.5 3.0 6.2 1.4 116 chr3L 9918885 intron CG34356 + chr3L 9918943 intron CG34356 + chr3L 9919001 intron CG34356 + chr3L_10_9915001 chr3L_9915001 RAL-332 1028 chr3L 9929671 9929701 chr3L 9938451 9938464 roo 7 8773 4.5 8.0 6.2 1.0 8793 chr3L 9929671 intron CG34356 + chr3L 9934068 intron CG34356 + chr3L 9938464 intron CG34356 + chr3L_7_9930001 chr3L_9930001 RAL-332 1029 chr3L 9966786 9966790 chr3L 9970297 9970307 14 3511 21.5 66.0 43.8 0.3 3521 chr3L 9966786 3` UTR,3` UTR CG34356 +,CG6685 - chr3L 9968546 5` UTR Nc + chr3L 9970307 exon Nc + chr3L_14_9965001 chr3L_9965001 RAL-332 1030 chr3L 9966785 9966814 chr3L 9970308 9970323 13 3518 32.5 62.0 47.2 0.3 3538 chr3L 9966785 3` UTR,3` UTR CG34356 +,CG6685 - chr3L 9968554 5` UTR Nc + chr3L 9970323 exon Nc + chr3L_13_9965001 chr3L_9965001 RAL-332 1031 chr3L 9987115 9987138 chr3L 9987193 9987207 6 72 5.5 2.0 3.8 1.2 92 chr3L 9987115 intron dpr6 + chr3L 9987161 intron dpr6 + chr3L 9987207 intron dpr6 + chr3L_6_9985001 chr3L_9985001 RAL-332 1032 chr3L 9990515 9990528 chr3L 9990619 9990619 4 100 6.5 8.5 7.5 0.5 104 chr3L 9990515 intron dpr6 + chr3L 9990567 intron dpr6 + chr3L 9990619 intron dpr6 + chr3L_4_9990001 chr3L_9990001 RAL-332 1033 chr3L 10003157 10003181 chr3L 10003252 10003278 9 93 1.5 5.5 3.5 2.0 121 chr3L 10003157 intron dpr6 + chr3L 10003218 intron dpr6 + chr3L 10003278 intron dpr6 + chr3L_9_10000001 chr3L_10000001 RAL-332 1034 chr3L 10043886 10043913 chr3L 10043958 10043995 10 77 2.5 2.5 2.5 2.9 109 chr3L 10043886 intron dpr6 + chr3L 10043940 intron dpr6 + chr3L 10043995 intron dpr6 + chr3L_10_10040001 chr3L_10040001 RAL-332 1035 chr3L 10048128 10048131 chr3L 10048229 10048245 6 108 0.5 5.0 2.8 1.6 117 chr3L 10048128 intron dpr6 + chr3L 10048186 intron dpr6 + chr3L 10048245 intron dpr6 + chr3L_6_10045001 chr3L_10045001 RAL-332 1036 chr3L 10165661 10165680 chr3L 10165737 10165746 5 70 3.5 0.0 1.8 1.8 85 chr3L 10165661 intron dpr10 - chr3L 10165704 intron dpr10 - chr3L 10165746 intron dpr10 - chr3L_5_10165001 chr3L_10165001 RAL-332 1037 chr3L 10179074 10179101 chr3L 10179151 10179175 21 82 3.5 3.5 3.5 4.7 101 chr3L 10179074 intron dpr10 - chr3L 10179124 intron dpr10 - chr3L 10179175 intron dpr10 - chr3L_21_10175001 chr3L_10175001 RAL-332 1038 chr3L 10214739 10214831 chr3L 10214818 10214932 6 89 0.0 0.0 0.0 6.0 193 chr3L 10214739 intergenic not near genes chr3L 10214836 intergenic not near genes chr3L 10214932 intergenic not near genes chr3L_6_10210001 chr3L_10210001 RAL-332 1039 chr3L 10298674 10298697 chr3L 10298754 10298784 8 79 2.0 4.0 3.0 2.0 110 chr3L 10298674 intergenic not near genes chr3L 10298729 intergenic not near genes chr3L 10298784 intergenic not near genes chr3L_8_10295001 chr3L_10295001 RAL-332 1040 chr3L 10337620 10337638 chr3L 10337845 10337853 8 224 4.5 6.0 5.2 1.3 233 chr3L 10337620 intergenic not near genes chr3L 10337736 intergenic not near genes chr3L 10337853 intergenic not near genes chr3L_8_10335001 chr3L_10335001 RAL-332 1041 chr3L 10397298 10397328 chr3L 10397375 10397407 4 78 5.5 0.5 3.0 1.0 109 chr3L 10397298 intergenic not near genes chr3L 10397352 intergenic not near genes chr3L 10397407 intergenic not near genes chr3L_4_10395001 chr3L_10395001 RAL-332 1042 chr3L 10414950 10414967 chr3L 10417318 10417339 Doc 6 2371 3.5 3.5 3.5 1.3 2389 chr3L 10414950 intergenic CG12362 + chr3L 10416144 intergenic not near genes chr3L 10417339 intergenic not near genes chr3L_6_10415001 chr3L_10415001 RAL-332 1043 chr3L 10414969 10414978 chr3L 10417315 10417350 Doc 7 2361 3.5 3.5 3.5 1.6 2381 chr3L 10414969 intergenic CG12362 + chr3L 10416160 intergenic not near genes chr3L 10417350 intergenic not near genes chr3L_7_10415001 chr3L_10415001 RAL-332 1044 chr3L 10417567 10417606 chr3L 10417644 10417658 15 71 4.5 5.0 4.8 2.6 91 chr3L 10417567 intergenic not near genes chr3L 10417612 intergenic not near genes chr3L 10417658 intergenic not near genes chr3L_15_10415001 chr3L_10415001 RAL-332 1045 chr3L 10477099 10477122 chr3L 10477200 10477223 5 100 5.0 2.0 3.5 1.1 124 chr3L 10477099 intergenic not near genes chr3L 10477161 intergenic not near genes chr3L 10477223 intergenic not near genes chr3L_5_10475001 chr3L_10475001 RAL-332 1046 chr3L 10653348 10653359 chr3L 10653433 10653444 6 83 4.0 5.0 4.5 1.1 96 chr3L 10653348 intron CG32066 - chr3L 10653396 intron CG32066 - chr3L 10653444 intron CG32066 - chr3L_6_10650001 chr3L_10650001 RAL-332 1047 chr3L 10654125 10654153 chr3L 10654212 10654240 12 82 3.5 3.0 3.2 2.9 115 chr3L 10654125 intron CG32066 - chr3L 10654182 intron CG32066 - chr3L 10654240 intron CG32066 - chr3L_12_10650001 chr3L_10650001 RAL-332 1048 chr3L 10654978 10655000 chr3L 10655049 10655065 5 66 1.5 1.5 1.5 2.0 87 chr3L 10654978 intron CG32066 - chr3L 10655022 intron CG32066 - chr3L 10655065 intron CG32066 - chr3L_5_10655001 chr3L_10655001 RAL-332 1049 chr3L 10683525 10683559 chr3L 10683719 10683747 8 189 6.0 5.5 5.8 1.2 222 chr3L 10683525 intron simj + chr3L 10683636 intron simj + chr3L 10683747 intron simj + chr3L_8_10680001 chr3L_10680001 RAL-332 1050 chr3L 10721997 10722015 chr3L 10722074 10722076 4 72 3.5 0.0 1.8 1.4 79 chr3L 10721997 intergenic not near genes chr3L 10722036 intergenic not near genes chr3L 10722076 intergenic not near genes chr3L_4_10720001 chr3L_10720001 RAL-332 1051 chr3L 10745541 10745566 chr3L 10745621 10745638 5 78 2.0 0.5 1.2 2.3 97 chr3L 10745541 intergenic not near genes chr3L 10745590 intergenic not near genes chr3L 10745638 intergenic not near genes chr3L_5_10745001 chr3L_10745001 RAL-332 1052 chr3L 10762833 10762862 chr3L 10762913 10762942 16 80 4.5 6.5 5.5 2.5 109 chr3L 10762833 intergenic not near genes chr3L 10762888 intergenic not near genes chr3L 10762942 intergenic not near genes chr3L_16_10760001 chr3L_10760001 RAL-332 1053 chr3L 10911686 10911693 chr3L 10911769 10911772 4 82 6.0 3.0 4.5 0.7 86 chr3L 10911686 intergenic not near genes chr3L 10911729 intergenic not near genes chr3L 10911772 intergenic not near genes chr3L_4_10910001 chr3L_10910001 RAL-332 1054 chr3L 10911699 10911710 chr3L 10911766 10911768 5 74 3.5 3.0 3.2 1.2 69 chr3L 10911699 intergenic not near genes chr3L 10911734 intergenic not near genes chr3L 10911768 intergenic not near genes chr3L_5_10910001 chr3L_10910001 RAL-332 1055 chr3L 10957008 10957031 chr3L 10957084 10957106 4 73 2.0 7.0 4.5 0.7 98 chr3L 10957008 intergenic not near genes chr3L 10957057 intergenic not near genes chr3L 10957106 intergenic not near genes chr3L_4_10955001 chr3L_10955001 RAL-332 1056 chr3L 11083518 11083539 chr3L 11083601 11083624 4 88 3.5 1.5 2.5 1.1 106 chr3L 11083518 intron JIL-1 - chr3L 11083571 intron JIL-1 - chr3L 11083624 intron JIL-1 - chr3L_4_11080001 chr3L_11080001 RAL-332 1057 chr3L 11087065 11087090 chr3L 11088846 11088877 S-element 12 1785 0.0 5.0 2.5 3.4 1812 chr3L 11087065 intron JIL-1 - chr3L 11087971 intron JIL-1 - chr3L 11088877 intron JIL-1 - chr3L_12_11085001 chr3L_11085001 RAL-332 1058 chr3L 11100903 11100912 chr3L 11102251 11102259 4 1348 27.5 21.0 24.2 0.2 1356 chr3L 11100903 exon Elo68beta - chr3L 11101581 exon Elo68beta - chr3L 11102259 exon Elo68alpha - chr3L_4_11100001 chr3L_11100001 RAL-332 1059 chr3L 11105293 11105328 chr3L 11107004 11107039 X-element 10 1708 2.0 3.5 2.8 2.6 1746 chr3L 11105293 intergenic not near genes chr3L 11106166 intergenic not near genes chr3L 11107039 exon CG32073 - chr3L_10_11105001 chr3L_11105001 RAL-332 1060 chr3L 11121588 11121594 chr3L 11122995 11123027 13 1418 29.5 57.0 43.2 0.3 1439 chr3L 11121588 exon mRpL2 + chr3L 11122308 exon Ufd1-like - chr3L 11123027 exon Ufd1-like - chr3L_13_11120001 chr3L_11120001 RAL-332 1061 chr3L 11135771 11135806 chr3L 11135856 11135891 10 84 1.0 5.5 3.2 2.4 120 chr3L 11135771 intergenic CG32082 +,CG14143 + chr3L 11135831 intergenic CG32082 +,CG14143 + chr3L 11135891 intergenic CG32082 +,CG14143 + chr3L_10_11135001 chr3L_11135001 RAL-332 1062 chr3L 11158193 11158407 chr3L 11158347 11158538 14 138 31.5 29.5 30.5 0.4 345 chr3L 11158193 exon CG32082 + chr3L 11158366 exon CG32082 + chr3L 11158538 exon CG32082 + chr3L_14_11155001 chr3L_11155001 RAL-332 1063 chr3L 11158514 11158778 chr3L 11158628 11158924 20 118 40.5 29.5 35.0 0.6 410 chr3L 11158514 exon CG32082 + chr3L 11158719 exon CG32082 + chr3L 11158924 exon CG32082 + chr3L_20_11155001 chr3L_11155001 RAL-332 1064 chr3L 11158782 11158804 chr3L 11158928 11158950 12 144 25.5 17.0 21.2 0.5 168 chr3L 11158782 exon CG32082 + chr3L 11158866 intron CG32082 + chr3L 11158950 exon CG32082 + chr3L_12_11155001 chr3L_11155001 RAL-332 1065 chr3L 11158936 11158966 chr3L 11159295 11159328 8 358 28.0 23.0 25.5 0.3 392 chr3L 11158936 exon CG32082 + chr3L 11159132 intron CG32082 + chr3L 11159328 exon CG32082 + chr3L_8_11155001 chr3L_11155001 RAL-332 1066 chr3L 11264473 11264498 chr3L 11271418 11271450 17.6 11 6947 4.5 5.0 4.8 1.9 6977 chr3L 11264473 intergenic not near genes chr3L 11267962 intergenic not near genes chr3L 11271450 intergenic not near genes chr3L_11_11265001 chr3L_11265001 RAL-332 1067 chr3L 11277458 11277489 chr3L 11278452 11278458 Rt1a 11 988 4.0 6.0 5.0 1.8 1000 chr3L 11277458 intergenic not near genes chr3L 11277958 intergenic not near genes chr3L 11278458 intergenic not near genes chr3L_11_11275001 chr3L_11275001 RAL-332 1068 chr3L 11279748 11279753 chr3L 11279799 11279807 6 61 3.5 3.0 3.2 1.4 59 chr3L 11279748 intergenic not near genes chr3L 11279778 intergenic not near genes chr3L 11279807 intergenic not near genes chr3L_6_11275001 chr3L_11275001 RAL-332 1069 chr3L 11329692 11329716 chr3L 11332892 11332921 jockey 6 3203 8.5 2.5 5.5 0.9 3229 chr3L 11329692 intergenic not near genes chr3L 11331306 intergenic not near genes chr3L 11332921 intergenic not near genes chr3L_6_11330001 chr3L_11330001 RAL-332 1070 chr3L 11579556 11579584 chr3L 11579662 11579690 7 104 5.0 1.5 3.2 1.7 134 chr3L 11579556 intergenic CG43390 - chr3L 11579623 intergenic CG43390 - chr3L 11579690 intergenic CG43390 - chr3L_7_11575001 chr3L_11575001 RAL-332 1071 chr3L 11588749 11588756 chr3L 11588889 11588909 8 151 1.0 4.5 2.8 2.1 160 chr3L 11588749 intergenic not near genes chr3L 11588829 intergenic not near genes chr3L 11588909 intergenic not near genes chr3L_8_11585001 chr3L_11585001 RAL-332 1072 chr3L 11666253 11666281 chr3L 11666407 11666417 15 151 0.0 5.5 2.8 3.9 164 chr3L 11666253 intron CG32085 - chr3L 11666335 intron CG32085 - chr3L 11666417 intron CG32085 - chr3L_15_11665001 chr3L_11665001 RAL-332 1073 chr3L 11723091 11723106 chr3L 11727873 11727901 Doc 8 4789 4.0 1.5 2.8 2.1 4810 chr3L 11723091 3` UTR Bmcp + chr3L 11725496 intron Bmcp + chr3L 11727901 3` UTR Bmcp + chr3L_8_11725001 chr3L_11725001 RAL-332 1074 chr3L 11729683 11729686 chr3L 11729759 11729762 4 76 6.5 6.0 6.2 0.6 79 chr3L 11729683 exon CG32088 + chr3L 11729722 intron CG32088 + chr3L 11729762 intron CG32088 + chr3L_4_11725001 chr3L_11725001 RAL-332 1075 chr3L 11729688 11729705 chr3L 11729757 11729781 11 72 2.0 4.5 3.2 2.6 93 chr3L 11729688 exon CG32088 + chr3L 11729734 intron CG32088 + chr3L 11729781 exon CG32088 + chr3L_11_11725001 chr3L_11725001 RAL-332 1076 chr3L 11740133 11740144 chr3L 11740230 11740230 4 95 17.0 8.0 12.5 0.3 97 chr3L 11740133 intron CG6024 - chr3L 11740182 intron CG6024 - chr3L 11740230 intron CG6024 - chr3L_4_11740001 chr3L_11740001 RAL-332 1077 chr3L 11740149 11740153 chr3L 11740228 11740251 5 87 13.0 8.0 10.5 0.4 102 chr3L 11740149 intron CG6024 - chr3L 11740200 intron CG6024 - chr3L 11740251 intron CG6024 - chr3L_5_11740001 chr3L_11740001 RAL-332 1078 chr3L 11744016 11744045 chr3L 11744122 11744142 8 103 6.5 0.0 3.2 1.9 126 chr3L 11744016 exon CG6024 - chr3L 11744079 intron CG6024 - chr3L 11744142 intron CG6024 - chr3L_8_11740001 chr3L_11740001 RAL-332 1079 chr3L 802565 802566 chr3L 11777678 11777678 4 10975112 19.0 16.0 17.5 0.2 10975113 chr3L 802565 intergenic not near genes chr3L 6290122 intergenic not near genes chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_4_6290001 chr3L_6290001 RAL-332 1080 chr3L 7749470 7749471 chr3L 11777678 11777678 10 4028208 6.5 16.0 11.2 0.8 4028208 chr3L 7749470 intron,3` UTR CG32373 +,CG13685 + chr3L 9763574 5` UTR CG8177 + chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_10_9760001 chr3L_9760001 RAL-332 1081 chr3L 9313026 9313160 chr3L 11777678 11777678 6 2464630 30.0 16.0 23.0 0.2 2464652 chr3L 9313026 intergenic not near genes chr3L 10545352 intron A2bp1 + chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_6_10545001 chr3L_10545001 RAL-332 1082 chr3L 11777678 11777678 chr3L 12163305 12163305 4 385627 14.5 29.5 22.0 0.2 385627 chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L 11970492 exon Muc68E - chr3L 12163305 intron CG9760 - chr3L_4_11970001 chr3L_11970001 RAL-332 1083 chr3L 11796588 11796599 chr3L 11796667 11796668 6 77 8.5 0.0 4.2 1.2 80 chr3L 11796588 exon Klp68D + chr3L 11796628 intron Klp68D + chr3L 11796668 intron Klp68D + chr3L_6_11795001 chr3L_11795001 RAL-332 1084 chr3L 11816804 11816816 chr3L 11816883 11816914 11 94 2.0 1.5 1.8 3.9 110 chr3L 11816804 3` UTR CG5946 - chr3L 11816859 3` UTR CG5946 - chr3L 11816914 3` UTR CG5946 - chr3L_11_11815001 chr3L_11815001 RAL-332 1085 chr3L 11846398 11846416 chr3L 11846518 11846534 6 118 0.0 0.0 0.0 6.0 136 chr3L 11846398 intergenic not near genes chr3L 11846466 intergenic not near genes chr3L 11846534 intergenic not near genes chr3L_6_11845001 chr3L_11845001 RAL-332 1086 chr3L 11868174 11868180 chr3L 11868240 11868242 4 70 11.0 0.5 5.8 0.6 68 chr3L 11868174 intron CG44837 - chr3L 11868208 intron CG44837 - chr3L 11868242 intron CG44837 - chr3L_4_11865001 chr3L_11865001 RAL-332 1087 chr3L 11868181 11868195 chr3L 11868239 11868271 9 72 6.0 0.5 3.2 2.1 90 chr3L 11868181 intron CG44837 - chr3L 11868226 intron CG44837 - chr3L 11868271 intron CG44837 - chr3L_9_11865001 chr3L_11865001 RAL-332 1088 chr3L 11905122 11905141 chr3L 11905202 11905223 12 79 3.0 6.5 4.8 2.1 101 chr3L 11905122 intron CG44837 - chr3L 11905172 intron CG44837 - chr3L 11905223 intron CG44837 - chr3L_12_11905001 chr3L_11905001 RAL-332 1089 chr3L 11938871 11938900 chr3L 11938960 11938989 7 81 5.5 4.5 5.0 1.2 118 chr3L 11938871 5` UTR CG44837 - chr3L 11938930 intergenic CG44837 - chr3L 11938989 intergenic CG44837 - chr3L_7_11935001 chr3L_11935001 RAL-332 1090 chr3L 11943509 11943513 chr3L 11943600 11943612 4 94 1.0 4.5 2.8 1.1 103 chr3L 11943509 intergenic Rpt4R +,CG5883 - chr3L 11943560 intergenic Rpt4R +,CG5883 - chr3L 11943612 intergenic CG5883 -,Rpt4R + chr3L_4_11940001 chr3L_11940001 RAL-332 1091 chr3L 12013921 12013938 chr3L 12014003 12014028 6 87 2.0 5.5 3.8 1.2 107 chr3L 12013921 intron rols - chr3L 12013974 intron rols - chr3L 12014028 intron rols - chr3L_6_12010001 chr3L_12010001 RAL-332 1092 chr3L 12052715 12052737 chr3L 12052804 12052819 7 86 1.5 8.0 4.8 1.2 104 chr3L 12052715 intron rols - chr3L 12052767 intron rols - chr3L 12052819 intron rols - chr3L_7_12050001 chr3L_12050001 RAL-332 1093 chr3L 12075428 12075450 chr3L 12075517 12075521 7 85 4.0 0.0 2.0 2.3 93 chr3L 12075428 intron Sema-5c - chr3L 12075474 intron Sema-5c - chr3L 12075521 intron Sema-5c - chr3L_7_12075001 chr3L_12075001 RAL-332 1094 chr3L 12124444 12124460 chr3L 12124512 12124537 4 74 3.0 4.0 3.5 0.9 93 chr3L 12124444 intron yps - chr3L 12124490 intron yps - chr3L 12124537 intron yps - chr3L_4_12120001 chr3L_12120001 RAL-332 1095 chr3L 12283588 12283589 chr3L 12283646 12283665 4 70 0.0 6.5 3.2 1.0 77 chr3L 12283588 intergenic not near genes chr3L 12283626 intergenic not near genes chr3L 12283665 intergenic not near genes chr3L_4_12280001 chr3L_12280001 RAL-332 1096 chr3L 12353938 12353951 chr3L 12354008 12354022 7 82 2.0 4.0 3.0 1.8 84 chr3L 12353938 intergenic not near genes chr3L 12353980 intergenic not near genes chr3L 12354022 intergenic not near genes chr3L_7_12350001 chr3L_12350001 RAL-332 1097 chr3L 12369550 12369567 chr3L 12369629 12369652 7 85 2.0 1.5 1.8 2.5 102 chr3L 12369550 intron Ncc69 - chr3L 12369601 intron Ncc69 - chr3L 12369652 intron Ncc69 - chr3L_7_12365001 chr3L_12365001 RAL-332 1098 chr3L 12446270 12446295 chr3L 12446347 12446355 8 71 2.0 3.0 2.5 2.3 85 chr3L 12446270 intergenic not near genes chr3L 12446312 intergenic not near genes chr3L 12446355 intergenic not near genes chr3L_8_12445001 chr3L_12445001 RAL-332 1099 chr3L 12467256 12467281 chr3L 12467341 12467366 5 84 0.5 4.5 2.5 1.4 110 chr3L 12467256 intron eyg - chr3L 12467311 intron eyg - chr3L 12467366 intron eyg - chr3L_5_12465001 chr3L_12465001 RAL-332 1100 chr3L 12565413 12565438 chr3L 12565493 12565518 11 77 7.0 2.5 4.8 1.9 105 chr3L 12565413 intron sowah - chr3L 12565466 intron sowah - chr3L 12565518 intron sowah - chr3L_11_12565001 chr3L_12565001 RAL-332 1101 chr3L 11777678 11777678 chr3L 12638619 12638625 5 860943 14.5 20.5 17.5 0.3 860947 chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L 12208152 intron app - chr3L 12638625 intron CR32111 + chr3L_5_12205001 chr3L_12205001 RAL-332 1102 chr3L 12668070 12668101 chr3L 12668155 12668186 8 81 0.0 2.0 1.0 4.0 116 chr3L 12668070 intergenic not near genes chr3L 12668128 intergenic not near genes chr3L 12668186 intergenic not near genes chr3L_8_12665001 chr3L_12665001 RAL-332 1103 chr3L 12720330 12720357 chr3L 12720415 12720442 7 80 4.0 3.0 3.5 1.6 112 chr3L 12720330 intergenic not near genes chr3L 12720386 intergenic not near genes chr3L 12720442 intergenic not near genes chr3L_7_12720001 chr3L_12720001 RAL-332 1104 chr3L 12788418 12788442 chr3L 12788538 12788558 6 114 1.5 3.0 2.2 1.9 140 chr3L 12788418 intron Atg1 - chr3L 12788488 intron Atg1 - chr3L 12788558 exon Atg1 - chr3L_6_12785001 chr3L_12785001 RAL-332 1105 chr3L 12801992 12802013 chr3L 12802054 12802089 6 73 4.5 2.5 3.5 1.3 97 chr3L 12801992 intron Atg1 - chr3L 12802040 intron Atg1 - chr3L 12802089 intron Atg1 - chr3L_6_12800001 chr3L_12800001 RAL-332 1106 chr3L 12874949 12874957 chr3L 12877228 12877249 jockey 6 2287 3.5 2.5 3.0 1.5 2300 chr3L 12874949 intergenic not near genes chr3L 12876099 intergenic not near genes chr3L 12877249 intergenic not near genes chr3L_6_12875001 chr3L_12875001 RAL-332 1107 chr3L 12894799 12894821 chr3L 12894877 12894895 7 76 8.0 10.5 9.2 0.7 96 chr3L 12894799 intergenic CG14118 + chr3L 12894847 intergenic CG14118 + chr3L 12894895 intergenic CG14118 + chr3L_7_12890001 chr3L_12890001 RAL-332 1108 chr3L 12919292 12919313 chr3L 12924746 12924766 Rt1c 13 5457 2.5 3.5 3.0 3.2 5474 chr3L 12919292 intergenic not near genes chr3L 12922029 intergenic not near genes chr3L 12924766 intergenic not near genes chr3L_13_12920001 chr3L_12920001 RAL-332 1109 chr3L 12928948 12928956 chr3L 12929033 12929041 5 84 16.0 8.0 12.0 0.4 93 chr3L 12928948 intergenic not near genes chr3L 12928994 intergenic not near genes chr3L 12929041 intergenic not near genes chr3L_5_12925001 chr3L_12925001 RAL-332 1110 chr3L 12928960 12928981 chr3L 12929031 12929051 13 78 9.0 8.0 8.5 1.4 91 chr3L 12928960 intergenic not near genes chr3L 12929006 intergenic not near genes chr3L 12929051 intergenic not near genes chr3L_13_12925001 chr3L_12925001 RAL-332 1111 chr3L 12955130 12955163 chr3L 12955206 12955228 11 72 2.0 2.0 2.0 3.7 98 chr3L 12955130 intergenic CG10752 - chr3L 12955179 intergenic not near genes chr3L 12955228 intergenic not near genes chr3L_11_12955001 chr3L_12955001 RAL-332 1112 chr3L 12957796 12957820 chr3L 12962269 12962302 copia 6 4480 1.0 5.5 3.2 1.4 4506 chr3L 12957796 intergenic not near genes chr3L 12960049 intergenic not near genes chr3L 12962302 intergenic not near genes chr3L_6_12960001 chr3L_12960001 RAL-332 1113 chr3L 12979503 12979529 chr3L 12979628 12979632 4 114 2.0 2.5 2.2 1.2 129 chr3L 12979503 intergenic not near genes chr3L 12979568 intergenic not near genes chr3L 12979632 intergenic not near genes chr3L_4_12975001 chr3L_12975001 RAL-332 1114 chr3L 13085064 13085078 chr3L 13085133 13085154 5 76 3.0 4.0 3.5 1.1 90 chr3L 13085064 intergenic not near genes chr3L 13085109 intergenic not near genes chr3L 13085154 intergenic not near genes chr3L_5_13085001 chr3L_13085001 RAL-332 1115 chr3L 13149543 13149569 chr3L 13149635 13149658 6 87 0.5 3.5 2.0 2.0 115 chr3L 13149543 intergenic not near genes chr3L 13149600 intergenic not near genes chr3L 13149658 intergenic not near genes chr3L_6_13145001 chr3L_13145001 RAL-332 1116 chr3L 13223227 13223239 chr3L 13223298 13223301 4 72 0.0 5.0 2.5 1.1 74 chr3L 13223227 intergenic not near genes chr3L 13223264 intergenic not near genes chr3L 13223301 intergenic not near genes chr3L_4_13220001 chr3L_13220001 RAL-332 1117 chr3L 13257255 13257285 chr3L 13257338 13257363 12 79 0.5 4.0 2.2 3.8 108 chr3L 13257255 intron caps + chr3L 13257309 intron caps + chr3L 13257363 intron caps + chr3L_12_13255001 chr3L_13255001 RAL-332 1118 chr3L 13267288 13267307 chr3L 13267399 13267420 12 111 7.0 2.5 4.8 2.1 132 chr3L 13267288 intron caps + chr3L 13267354 intron caps + chr3L 13267420 intron caps + chr3L_12_13265001 chr3L_13265001 RAL-332 1119 chr3L 13432289 13432325 chr3L 13432388 13432421 17 96 4.5 7.5 6.0 2.4 132 chr3L 13432289 intron CG10713 - chr3L 13432355 intron CG10713 - chr3L 13432421 intron CG10713 - chr3L_17_13430001 chr3L_13430001 RAL-332 1120 chr3L 13477018 13477031 chr3L 13477088 13477108 5 74 0.0 2.5 1.2 2.3 90 chr3L 13477018 intergenic not near genes chr3L 13477063 intergenic stv + chr3L 13477108 intergenic stv + chr3L_5_13475001 chr3L_13475001 RAL-332 1121 chr3L 13525155 13525188 chr3L 13532951 13532979 roo 11 7792 5.0 4.0 4.5 2.0 7824 chr3L 13525155 intergenic not near genes chr3L 13529067 intergenic not near genes chr3L 13532979 intergenic not near genes chr3L_11_13525001 chr3L_13525001 RAL-332 1122 chr3L 13559967 13559970 chr3L 13560052 13560056 4 86 10.0 4.0 7.0 0.5 89 chr3L 13559967 intron bru-3 - chr3L 13560012 intron bru-3 - chr3L 13560056 intron bru-3 - chr3L_4_13560001 chr3L_13560001 RAL-332 1123 chr3L 13559974 13559995 chr3L 13560046 13560081 15 82 5.5 3.0 4.2 2.9 107 chr3L 13559974 intron bru-3 - chr3L 13560028 intron bru-3 - chr3L 13560081 intron bru-3 - chr3L_15_13560001 chr3L_13560001 RAL-332 1124 chr3L 13595024 13595036 chr3L 13595104 13595116 6 78 3.5 6.5 5.0 1.0 92 chr3L 13595024 intron bru-3 - chr3L 13595070 intron bru-3 - chr3L 13595116 intron bru-3 - chr3L_6_13595001 chr3L_13595001 RAL-332 1125 chr3L 13629531 13629549 chr3L 13629640 13629641 6 106 4.0 8.0 6.0 0.9 110 chr3L 13629531 intron bru-3 - chr3L 13629586 intron bru-3 - chr3L 13629641 intron bru-3 - chr3L_6_13625001 chr3L_13625001 RAL-332 1126 chr3L 13677536 13677758 chr3L 13677611 13677909 7 132 0.0 1.0 0.5 4.7 373 chr3L 13677536 intron bru-3 - chr3L 13677722 intron bru-3 - chr3L 13677909 intron bru-3 - chr3L_7_13675001 chr3L_13675001 RAL-332 1127 chr3L 13703435 13703467 chr3L 13703519 13703553 12 82 0.5 4.0 2.2 3.8 118 chr3L 13703435 intron bru-3 - chr3L 13703494 intron bru-3 - chr3L 13703553 intron bru-3 - chr3L_12_13700001 chr3L_13700001 RAL-332 1128 chr3L 13722444 13722462 chr3L 13722522 13722540 4 76 3.5 2.5 3.0 1.0 96 chr3L 13722444 intron bru-3 - chr3L 13722492 intron bru-3 - chr3L 13722540 intron bru-3 - chr3L_4_13720001 chr3L_13720001 RAL-332 1129 chr3L 13804561 13804576 chr3L 13822845 13822861 roo 5 18285 2.0 4.5 3.2 1.2 18300 chr3L 13804561 intergenic not near genes chr3L 13813711 intergenic not near genes chr3L 13822861 intergenic not near genes chr3L_5_13810001 chr3L_13810001 RAL-332 1130 chr3L 13826645 13826658 chr3L 13826733 13826733 6 85 6.5 8.0 7.2 0.7 88 chr3L 13826645 intergenic not near genes chr3L 13826689 intergenic not near genes chr3L 13826733 intergenic not near genes chr3L_6_13825001 chr3L_13825001 RAL-332 1131 chr3L 13826659 13826674 chr3L 13826729 13826741 6 76 4.0 6.0 5.0 1.0 82 chr3L 13826659 intergenic not near genes chr3L 13826700 intergenic not near genes chr3L 13826741 intergenic not near genes chr3L_6_13825001 chr3L_13825001 RAL-332 1132 chr3L 1456714 1456719 chr3L 13867891 13867895 5 12411166 21.0 7.0 14.0 0.3 12411181 chr3L 1456714 intron Ptp61F - chr3L 7662304 intron,intron,intron CG32373 +,Ank2 -,CG44195 - chr3L 13867895 3` UTR dysc - chr3L_5_7660001 chr3L_7660001 RAL-332 1133 chr3L 13957885 13957904 chr3L 13958078 13958097 11 191 4.5 5.0 4.8 1.9 212 chr3L 13957885 intron CG32137 + chr3L 13957991 intron CG32137 + chr3L 13958097 intron CG32137 + chr3L_11_13955001 chr3L_13955001 RAL-332 1134 chr3L 14036674 14036701 chr3L 14036767 14036794 16 90 5.0 3.0 4.0 3.2 120 chr3L 14036674 3` UTR,3` UTR pncr014:3L -,CG6661 + chr3L 14036734 3` UTR,3` UTR pncr014:3L -,CG6661 + chr3L 14036794 3` UTR pncr014:3L - chr3L_16_14035001 chr3L_14035001 RAL-332 1135 chr3L 14076293 14076320 chr3L 14076371 14076397 11 74 0.0 3.0 1.5 4.4 104 chr3L 14076293 intron btl + chr3L 14076345 intron btl + chr3L 14076397 intron btl + chr3L_11_14075001 chr3L_14075001 RAL-332 1136 chr3L 14207850 14207881 chr3L 14207932 14207964 17 77 4.0 7.0 5.5 2.6 114 chr3L 14207850 intron nuf + chr3L 14207907 intron nuf + chr3L 14207964 intron nuf + chr3L_17_14205001 chr3L_14205001 RAL-332 1137 chr3L 14211441 14211465 chr3L 14211519 14211529 6 74 0.5 4.0 2.2 1.9 88 chr3L 14211441 intron nuf + chr3L 14211485 intron nuf + chr3L 14211529 intron nuf + chr3L_6_14210001 chr3L_14210001 RAL-332 1138 chr3L 14234475 14234501 chr3L 14234559 14234575 4 82 6.0 0.0 3.0 1.0 100 chr3L 14234475 exon CG7924 + chr3L 14234525 3` UTR CG7924 + chr3L 14234575 3` UTR CG7924 + chr3L_4_14230001 chr3L_14230001 RAL-332 1139 chr3L 14245565 14245593 chr3L 14245659 14245684 1360 13 92 6.0 3.5 4.8 2.2 119 chr3L 14245565 3` UTR CR44561 - chr3L 14245624 3` UTR CR44561 - chr3L 14245684 3` UTR CR44561 - chr3L_13_14245001 chr3L_14245001 RAL-332 1140 chr3L 14282589 14282607 chr3L 14282666 14282687 9 77 7.5 9.0 8.2 1.0 98 chr3L 14282589 intron fz + chr3L 14282638 intron fz + chr3L 14282687 intron fz + chr3L_9_14280001 chr3L_14280001 RAL-332 1141 chr3L 14295990 14296001 chr3L 14296467 14296476 roo 5 479 3.5 3.0 3.2 1.2 486 chr3L 14295990 intron fz + chr3L 14296233 intron fz + chr3L 14296476 intron fz + chr3L_5_14295001 chr3L_14295001 RAL-332 1142 chr3L 14296005 14296016 chr3L 14296466 14296495 roo 4 478 6.0 3.0 4.5 0.7 490 chr3L 14296005 intron fz + chr3L 14296250 intron fz + chr3L 14296495 intron fz + chr3L_4_14295001 chr3L_14295001 RAL-332 1143 chr3L 14312024 14312051 chr3L 14316838 14316862 X-element 4 4811 3.0 4.0 3.5 0.9 4838 chr3L 14312024 exon fz + chr3L 14314443 intron fz + chr3L 14316862 intron fz + chr3L_4_14310001 chr3L_14310001 RAL-332 1144 chr3L 14433652 14433670 chr3L 14433754 14433757 4 99 10.5 4.0 7.2 0.5 105 chr3L 14433652 intron bbg - chr3L 14433704 intron bbg - chr3L 14433757 intron bbg - chr3L_4_14430001 chr3L_14430001 RAL-332 1145 chr3L 14468449 14468476 chr3L 14473655 14473665 copia 6 5200 3.5 3.0 3.2 1.4 5216 chr3L 14468449 intron bbg - chr3L 14471057 intron bbg - chr3L 14473665 intron bbg - chr3L_6_14470001 chr3L_14470001 RAL-332 1146 chr3L 14486021 14486048 chr3L 14486102 14486129 5 77 7.0 3.0 5.0 0.8 108 chr3L 14486021 intron bbg - chr3L 14486075 intron bbg - chr3L 14486129 intron bbg - chr3L_5_14485001 chr3L_14485001 RAL-332 1147 chr3L 14502443 14502467 chr3L 14502598 14502623 15 153 1.5 7.0 4.2 2.9 180 chr3L 14502443 intron bbg - chr3L 14502533 intron bbg - chr3L 14502623 intron bbg - chr3L_15_14500001 chr3L_14500001 RAL-332 1148 chr3L 14506643 14506655 chr3L 14506885 14506894 6 242 5.0 10.5 7.8 0.7 251 chr3L 14506643 intron bbg - chr3L 14506768 intron bbg - chr3L 14506894 intron bbg - chr3L_6_14505001 chr3L_14505001 RAL-332 1149 chr3L 14522112 14522127 chr3L 14522202 14522226 4 96 0.5 1.5 1.0 2.0 114 chr3L 14522112 intron bbg - chr3L 14522169 intron bbg - chr3L 14522226 intron bbg - chr3L_4_14520001 chr3L_14520001 RAL-332 1150 chr3L 14570605 14570632 chr3L 14570747 14570760 6 138 1.5 1.5 1.5 2.4 155 chr3L 14570605 intergenic not near genes chr3L 14570682 intergenic not near genes chr3L 14570760 intergenic not near genes chr3L_6_14570001 chr3L_14570001 RAL-332 1151 chr3L 14596112 14596140 chr3L 14596191 14596220 5 80 0.0 1.5 0.8 2.8 108 chr3L 14596112 intron HGTX - chr3L 14596166 intron HGTX - chr3L 14596220 intron HGTX - chr3L_5_14595001 chr3L_14595001 RAL-332 1152 chr3L 14721188 14721196 chr3L 14723029 14723032 Rt1c 7 1840 13.5 8.5 11.0 0.6 1844 chr3L 14721188 intron ome + chr3L 14722110 intron ome + chr3L 14723032 intron ome + chr3L_7_14720001 chr3L_14720001 RAL-332 1153 chr3L 14721201 14721208 chr3L 14723022 14723050 Rt1c 8 1838 11.0 6.0 8.5 0.8 1849 chr3L 14721201 intron ome + chr3L 14722126 intron ome + chr3L 14723050 intron ome + chr3L_8_14720001 chr3L_14720001 RAL-332 1154 chr3L 14840374 14840388 chr3L 14840479 14840493 5 103 2.0 11.5 6.8 0.6 119 chr3L 14840374 intron CG17839 + chr3L 14840434 intron CG17839 + chr3L 14840493 intron CG17839 + chr3L_5_14840001 chr3L_14840001 RAL-332 1155 chr3L 14922110 14922114 chr3L 14922214 14922222 5 107 11.5 1.5 6.5 0.7 112 chr3L 14922110 intron DCX-EMAP + chr3L 14922166 intron DCX-EMAP + chr3L 14922222 intron DCX-EMAP + chr3L_5_14920001 chr3L_14920001 RAL-332 1156 chr3L 14922116 14922134 chr3L 14922213 14922218 4 93 5.0 1.5 3.2 1.0 102 chr3L 14922116 intron DCX-EMAP + chr3L 14922167 intron DCX-EMAP + chr3L 14922218 intron DCX-EMAP + chr3L_4_14920001 chr3L_14920001 RAL-332 1157 chr3L 15006015 15006048 chr3L 15006171 15006173 8 151 2.5 3.5 3.0 2.0 158 chr3L 15006015 intron Reck - chr3L 15006094 intron Reck - chr3L 15006173 intron Reck - chr3L_8_15005001 chr3L_15005001 RAL-332 1158 chr3L 15193704 15193720 chr3L 15193864 15193889 6 165 3.0 1.5 2.2 1.9 185 chr3L 15193704 intergenic not near genes chr3L 15193796 intergenic not near genes chr3L 15193889 intergenic not near genes chr3L_6_15190001 chr3L_15190001 RAL-332 1159 chr3L 15233562 15233577 chr3L 15233634 15233658 6 75 3.0 1.5 2.2 1.9 96 chr3L 15233562 intergenic not near genes chr3L 15233610 intergenic not near genes chr3L 15233658 intergenic not near genes chr3L_6_15230001 chr3L_15230001 RAL-332 1160 chr3L 15333143 15333168 chr3L 15333220 15333244 5 75 0.5 4.0 2.2 1.6 101 chr3L 15333143 intergenic CR43247 + chr3L 15333194 intergenic CR43247 + chr3L 15333244 intergenic CR43247 + chr3L_5_15330001 chr3L_15330001 RAL-332 1161 chr3L 15348115 15348139 chr3L 15348266 15348291 10 155 5.5 1.5 3.5 2.2 176 chr3L 15348115 intergenic not near genes chr3L 15348203 intergenic not near genes chr3L 15348291 intergenic not near genes chr3L_10_15345001 chr3L_15345001 RAL-332 1162 chr3L 15423762 15423783 chr3L 15426604 15426610 opus 5 2840 4.0 1.5 2.8 1.3 2848 chr3L 15423762 intergenic not near genes chr3L 15425186 intergenic not near genes chr3L 15426610 intergenic not near genes chr3L_5_15425001 chr3L_15425001 RAL-332 1163 chr3L 15466047 15466128 chr3L 15466122 15466224 5 92 0.0 0.0 0.0 5.0 177 chr3L 15466047 intergenic not near genes chr3L 15466136 intergenic not near genes chr3L 15466224 intergenic not near genes chr3L_5_15465001 chr3L_15465001 RAL-332 1164 chr3L 15541626 15541652 chr3L 15541710 15541743 4 89 5.0 1.0 3.0 1.0 117 chr3L 15541626 intron CrebA + chr3L 15541684 intron CrebA + chr3L 15541743 intron CrebA + chr3L_4_15540001 chr3L_15540001 RAL-332 1165 chr3L 15551934 15551956 chr3L 15552008 15552008 6 70 1.5 2.0 1.8 2.1 74 chr3L 15551934 3` UTR CrebA + chr3L 15551971 3` UTR CrebA + chr3L 15552008 3` UTR CrebA + chr3L_6_15550001 chr3L_15550001 RAL-332 1166 chr3L 15591625 15591653 chr3L 15591774 15591807 6 153 1.5 5.5 3.5 1.3 182 chr3L 15591625 intron RhoGAP71E + chr3L 15591716 intron RhoGAP71E + chr3L 15591807 intron RhoGAP71E + chr3L_6_15590001 chr3L_15590001 RAL-332 1167 chr3L 15784578 15784590 chr3L 15784662 15784686 4 89 2.0 1.0 1.5 1.6 108 chr3L 15784578 intergenic not near genes chr3L 15784632 intergenic not near genes chr3L 15784686 intergenic not near genes chr3L_4_15780001 chr3L_15780001 RAL-332 1168 chr3L 15836241 15836274 chr3L 15836326 15836360 14 84 4.0 3.0 3.5 3.1 119 chr3L 15836241 exon CG15715 - chr3L 15836300 intron CG15715 - chr3L 15836360 intron CG15715 - chr3L_14_15835001 chr3L_15835001 RAL-332 1169 chr3L 15899228 15899263 chr3L 15899794 15899801 jockey 11 560 4.0 4.5 4.2 2.1 573 chr3L 15899228 intergenic pHCl - chr3L 15899514 intergenic pHCl - chr3L 15899801 intergenic sff - chr3L_11_15895001 chr3L_15895001 RAL-332 1170 chr3L 15912553 15912583 chr3L 15912631 15912661 10 77 3.5 2.5 3.0 2.5 108 chr3L 15912553 intron sff - chr3L 15912607 intron sff - chr3L 15912661 intron sff - chr3L_10_15910001 chr3L_15910001 RAL-332 1171 chr3L 15939849 15939884 chr3L 15939925 15939960 5 74 1.0 2.0 1.5 2.0 111 chr3L 15939849 intron Pka-C3 - chr3L 15939904 intron Pka-C3 - chr3L 15939960 intron Pka-C3 - chr3L_5_15935001 chr3L_15935001 RAL-332 1172 chr3L 16153899 16153925 chr3L 16153968 16154000 9 71 4.0 5.5 4.8 1.6 101 chr3L 16153899 intron CG5151 - chr3L 16153950 intron CG5151 - chr3L 16154000 intron CG5151 - chr3L_9_16150001 chr3L_16150001 RAL-332 1173 chr3L 16184093 16184117 chr3L 16188930 16188961 X-element 9 4839 3.0 1.5 2.2 2.8 4868 chr3L 16184093 intergenic not near genes chr3L 16186527 intergenic not near genes chr3L 16188961 intergenic not near genes chr3L_9_16185001 chr3L_16185001 RAL-332 1174 chr3L 16212814 16212838 chr3L 16212904 16212915 4 86 1.0 0.0 0.5 2.7 101 chr3L 16212814 intergenic CG13073 - chr3L 16212864 intergenic CG13073 - chr3L 16212915 intergenic CG13073 - chr3L_4_16210001 chr3L_16210001 RAL-332 1175 chr3L 16241895 16241929 chr3L 16241977 16242013 25 79 6.5 1.0 3.8 5.2 118 chr3L 16241895 intergenic not near genes chr3L 16241954 intergenic not near genes chr3L 16242013 intergenic not near genes chr3L_25_16240001 chr3L_16240001 RAL-332 1176 chr3L 16252076 16252087 chr3L 16252201 16252207 4 123 11.0 1.5 6.2 0.6 131 chr3L 16252076 5` UTR CG13055 - chr3L 16252142 5` UTR CG13055 - chr3L 16252207 5` UTR CG13055 - chr3L_4_16250001 chr3L_16250001 RAL-332 1177 chr3L 16252090 16252100 chr3L 16252195 16252204 5 107 7.5 0.5 4.0 1.0 114 chr3L 16252090 5` UTR CG13055 - chr3L 16252147 5` UTR CG13055 - chr3L 16252204 5` UTR CG13055 - chr3L_5_16250001 chr3L_16250001 RAL-332 1178 chr3L 16279093 16279104 chr3L 16279166 16279185 5 77 2.0 3.0 2.5 1.4 92 chr3L 16279093 intron CG13050 - chr3L 16279139 intron CG13050 - chr3L 16279185 intron CG13050 - chr3L_5_16275001 chr3L_16275001 RAL-332 1179 chr3L 16325587 16325602 chr3L 16325659 16325697 9 74 5.5 6.5 6.0 1.3 110 chr3L 16325587 exon CG13040 - chr3L 16325642 exon CG13040 - chr3L 16325697 intron CG13040 - chr3L_9_16325001 chr3L_16325001 RAL-332 1180 chr3L 16391076 16391095 chr3L 16391149 16391160 6 70 1.5 5.5 3.5 1.3 84 chr3L 16391076 intergenic CG44836 -,RAF2 + chr3L 16391118 3` UTR CG44836 - chr3L 16391160 exon CG44836 - chr3L_6_16390001 chr3L_16390001 RAL-332 1181 chr3L 16427789 16427793 chr3L 16427872 16427878 4 84 7.0 15.5 11.2 0.3 89 chr3L 16427789 intron,intron CG33158 +,dsx-c73A - chr3L 16427834 intron,intron CG33158 +,dsx-c73A - chr3L 16427878 intron,intron CG33158 +,dsx-c73A - chr3L_4_16425001 chr3L_16425001 RAL-332 1182 chr3L 16443859 16443876 chr3L 16446196 16446202 Doc 9 2333 2.0 8.0 5.0 1.5 2343 chr3L 16443859 intron,intron CG33158 +,dsx-c73A - chr3L 16445030 intron,intron CG33158 +,dsx-c73A - chr3L 16446202 intron,intron CG33158 +,dsx-c73A - chr3L_9_16445001 chr3L_16445001 RAL-332 1183 chr3L 16493973 16494010 chr3L 16494490 16494518 jockey 12 513 7.0 6.0 6.5 1.6 545 chr3L 16493973 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494246 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494518 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_12_16490001 chr3L_16490001 RAL-332 1184 chr3L 16514564 16514599 chr3L 16514662 16514696 6 92 2.5 2.5 2.5 1.7 132 chr3L 16514564 intron CG43373 - chr3L 16514630 intron CG43373 - chr3L 16514696 intron CG43373 - chr3L_6_16510001 chr3L_16510001 RAL-332 1185 chr3L 16540055 16540085 chr3L 16540143 16540171 5 86 1.0 5.5 3.2 1.2 116 chr3L 16540055 intron CG43373 - chr3L 16540113 intron CG43373 - chr3L 16540171 intron CG43373 - chr3L_5_16540001 chr3L_16540001 RAL-332 1186 chr3L 16616513 16616541 chr3L 16621840 16621867 297 5 5324 3.5 5.5 4.5 0.9 5354 chr3L 16616513 3` UTR Abl - chr3L 16619190 3` UTR Abl - chr3L 16621867 3` UTR Abl - chr3L_5_16615001 chr3L_16615001 RAL-332 1187 chr3L 16652694 16652712 chr3L 16652762 16652791 7 75 4.0 2.5 3.2 1.7 97 chr3L 16652694 intron Baldspot - chr3L 16652742 intron Baldspot - chr3L 16652791 intron Baldspot - chr3L_7_16650001 chr3L_16650001 RAL-332 1188 chr3L 16698393 16698407 chr3L 16698477 16698501 4 88 6.5 3.5 5.0 0.7 108 chr3L 16698393 intron,intron Lasp -,CG43954 - chr3L 16698447 intron,intron Lasp -,CG43954 - chr3L 16698501 intron,intron Lasp -,CG43954 - chr3L_4_16695001 chr3L_16695001 RAL-332 1189 chr3L 16764593 16764611 chr3L 16764673 16764718 9 103 1.5 0.0 0.8 5.0 125 chr3L 16764593 intergenic not near genes chr3L 16764656 intergenic not near genes chr3L 16764718 intergenic not near genes chr3L_9_16760001 chr3L_16760001 RAL-332 1190 chr3L 16786975 16787002 chr3L 16787051 16787078 10 71 0.0 5.0 2.5 2.9 103 chr3L 16786975 intergenic Int6 - chr3L 16787026 intergenic Int6 - chr3L 16787078 intergenic Int6 -,CG9674 - chr3L_10_16785001 chr3L_16785001 RAL-332 1191 chr3L 16807784 16808072 chr3L 16807863 16808146 13 76 1.5 2.5 2.0 4.3 362 chr3L 16807784 intron nudC + chr3L 16807965 intron nudC + chr3L 16808146 intron nudC + chr3L_13_16805001 chr3L_16805001 RAL-332 1192 chr3L 16817875 16817908 chr3L 16818014 16818033 12 135 7.5 3.5 5.5 1.8 158 chr3L 16817875 intron,intron nudC +,CG13024 - chr3L 16817954 intron,intron nudC +,CG13024 - chr3L 16818033 intron,intron nudC +,CG13024 - chr3L_12_16815001 chr3L_16815001 RAL-332 1193 chr3L 16818746 16818778 chr3L 16818822 16818854 10 74 3.5 3.0 3.2 2.4 108 chr3L 16818746 intron,intron nudC +,CG13024 - chr3L 16818800 intron,intron nudC +,CG13024 - chr3L 16818854 intron,intron nudC +,CG13024 - chr3L_10_16815001 chr3L_16815001 RAL-332 1194 chr3L 16845024 16845031 chr3L 16845137 16845139 4 111 6.0 2.0 4.0 0.8 115 chr3L 16845024 intergenic CG9669 -,CG9715 +,TSG101 + chr3L 16845082 intergenic CG9669 -,CG9715 +,TSG101 + chr3L 16845139 intergenic CG9669 -,CG9715 + chr3L_4_16845001 chr3L_16845001 RAL-332 1195 chr3L 16867547 16867569 chr3L 16867625 16867639 7 72 3.5 3.5 3.5 1.6 92 chr3L 16867547 intron Lmpt + chr3L 16867593 intron Lmpt + chr3L 16867639 intron Lmpt + chr3L_7_16865001 chr3L_16865001 RAL-332 1196 chr3L 16869583 16869602 chr3L 16869666 16869685 7 79 2.0 1.0 1.5 2.8 102 chr3L 16869583 intron Lmpt + chr3L 16869634 intron Lmpt + chr3L 16869685 intron Lmpt + chr3L_7_16865001 chr3L_16865001 RAL-332 1197 chr3L 16874538 16874572 chr3L 16874699 16874726 7 157 1.5 2.5 2.0 2.3 188 chr3L 16874538 intron Lmpt + chr3L 16874632 intron Lmpt + chr3L 16874726 intron Lmpt + chr3L_7_16870001 chr3L_16870001 RAL-332 1198 chr3L 16888812 16888840 chr3L 16889102 16889129 14 287 5.0 4.5 4.8 2.4 317 chr3L 16888812 intron Lmpt + chr3L 16888970 intron Lmpt + chr3L 16889129 intron Lmpt + chr3L_14_16885001 chr3L_16885001 RAL-332 1199 chr3L 16945726 16945761 chr3L 16954879 16954914 roo 24 9146 5.5 1.5 3.5 5.3 9188 chr3L 16945726 exon Obp73a + chr3L 16950320 intergenic not near genes chr3L 16954914 5` UTR Nc73EF + chr3L_24_16950001 chr3L_16950001 RAL-332 1200 chr3L 17026792 17026823 chr3L 17026873 17026884 8 74 5.5 2.5 4.0 1.6 92 chr3L 17026792 exon Fit2 + chr3L 17026838 3` UTR Fit2 + chr3L 17026884 3` UTR Fit2 + chr3L_8_17025001 chr3L_17025001 RAL-332 1201 chr3L 17067759 17067777 chr3L 17067876 17067905 9 126 4.0 2.5 3.2 2.1 146 chr3L 17067759 intron Rbp6 - chr3L 17067832 intron Rbp6 - chr3L 17067905 intron Rbp6 - chr3L_9_17065001 chr3L_17065001 RAL-332 1202 chr3L 17085007 17085017 chr3L 17094154 17094165 roo 4 9148 10.0 5.0 7.5 0.5 9158 chr3L 17085007 intron Rbp6 - chr3L 17089586 intron Rbp6 - chr3L 17094165 intron Rbp6 - chr3L_4_17085001 chr3L_17085001 RAL-332 1203 chr3L 17085018 17085035 chr3L 17094153 17094176 roo 7 9142 6.0 5.0 5.5 1.1 9158 chr3L 17085018 intron Rbp6 - chr3L 17089597 intron Rbp6 - chr3L 17094176 intron Rbp6 - chr3L_7_17085001 chr3L_17085001 RAL-332 1204 chr3L 17099164 17099193 chr3L 17099285 17099314 17 116 4.0 4.0 4.0 3.4 150 chr3L 17099164 intron Rbp6 - chr3L 17099239 intron Rbp6 - chr3L 17099314 intron Rbp6 - chr3L_17_17095001 chr3L_17095001 RAL-332 1205 chr3L 17117103 17117132 chr3L 17117188 17117217 19 78 6.0 3.5 4.8 3.3 114 chr3L 17117103 intron Rbp6 - chr3L 17117160 intron Rbp6 - chr3L 17117217 intron Rbp6 - chr3L_19_17115001 chr3L_17115001 RAL-332 1206 chr3L 17149164 17149193 chr3L 17149244 17149265 9 77 4.0 0.0 2.0 3.0 101 chr3L 17149164 intron Rbp6 - chr3L 17149214 intron Rbp6 - chr3L 17149265 intron Rbp6 - chr3L_9_17145001 chr3L_17145001 RAL-332 1207 chr3L 17164380 17164386 chr3L 17164519 17164526 4 140 4.0 0.0 2.0 1.3 146 chr3L 17164380 intron Rbp6 - chr3L 17164453 intron Rbp6 - chr3L 17164526 intron Rbp6 - chr3L_4_17160001 chr3L_17160001 RAL-332 1208 chr3L 17474909 17474925 chr3L 17474986 17475001 6 74 4.5 2.0 3.2 1.4 92 chr3L 17474909 intergenic CG7580 +,CG7589 + chr3L 17474955 intergenic CG7580 +,CG7589 + chr3L 17475001 intergenic CG7580 +,CG7589 + chr3L_6_17470001 chr3L_17470001 RAL-332 1209 chr3L 17474929 17474942 chr3L 17474982 17475019 11 70 3.0 1.5 2.2 3.4 90 chr3L 17474929 intergenic CG7580 +,CG7589 + chr3L 17474974 intergenic CG7580 +,CG7589 + chr3L 17475019 intergenic CG7580 + chr3L_11_17470001 chr3L_17470001 RAL-332 1210 chr3L 17510744 17510765 chr3L 17510828 17510842 6 83 3.0 6.0 4.5 1.1 98 chr3L 17510744 exon Oatp74D + chr3L 17510793 intron Oatp74D + chr3L 17510842 intron Oatp74D + chr3L_6_17510001 chr3L_17510001 RAL-332 1211 chr3L 17516988 17517009 chr3L 17524536 17524551 412 12 7554 4.0 4.0 4.0 2.4 7563 chr3L 17516988 intron CG7564 + chr3L 17520770 intron CG7564 + chr3L 17524551 3` UTR CG7564 + chr3L_12_17520001 chr3L_17520001 RAL-332 1212 chr3L 17535818 17535847 chr3L 17535925 17535953 18 109 2.5 2.5 2.5 5.1 135 chr3L 17535818 intron Nedd4 + chr3L 17535886 intron Nedd4 + chr3L 17535953 intron Nedd4 + chr3L_18_17535001 chr3L_17535001 RAL-332 1213 chr3L 17646018 17646027 chr3L 17646198 17646213 8 173 42.5 41.0 41.8 0.2 195 chr3L 17646018 exon CG43085 - chr3L 17646116 exon CG43085 - chr3L 17646213 exon CG43085 - chr3L_8_17645001 chr3L_17645001 RAL-332 1214 chr3L 17789850 17789874 chr3L 17789917 17789950 4 72 1.0 1.0 1.0 2.0 100 chr3L 17789850 intergenic not near genes chr3L 17789900 intergenic not near genes chr3L 17789950 intergenic not near genes chr3L_4_17785001 chr3L_17785001 RAL-332 1215 chr3L 17991575 17991587 chr3L 17991645 17991665 4 76 5.5 4.0 4.8 0.7 90 chr3L 17991575 intron Eip75B - chr3L 17991620 intron Eip75B - chr3L 17991665 intron Eip75B - chr3L_4_17990001 chr3L_17990001 RAL-332 1216 chr3L 17999779 17999792 chr3L 17999850 17999858 6 74 3.5 1.0 2.2 1.9 79 chr3L 17999779 intron Eip75B - chr3L 17999818 intron Eip75B - chr3L 17999858 intron Eip75B - chr3L_6_17995001 chr3L_17995001 RAL-332 1217 chr3L 18029962 18029976 chr3L 18030039 18030053 5 77 1.0 0.0 0.5 3.3 91 chr3L 18029962 intron Eip75B - chr3L 18030008 intron Eip75B - chr3L 18030053 intron Eip75B - chr3L_5_18030001 chr3L_18030001 RAL-332 1218 chr3L 18034699 18034707 chr3L 18034766 18034788 9 74 5.5 5.0 5.2 1.5 89 chr3L 18034699 intron Eip75B - chr3L 18034744 intron Eip75B - chr3L 18034788 intron Eip75B - chr3L_9_18030001 chr3L_18030001 RAL-332 1219 chr3L 18119661 18119681 chr3L 18119749 18119769 5 93 0.0 6.0 3.0 1.2 108 chr3L 18119661 intron CG7341 + chr3L 18119715 intron CG7341 + chr3L 18119769 intron CG7341 + chr3L_5_18115001 chr3L_18115001 RAL-332 1220 chr3L 18154085 18154106 chr3L 18154168 18154187 4 79 1.5 5.5 3.5 0.9 102 chr3L 18154085 intergenic CG7330 + chr3L 18154136 intergenic CG7330 + chr3L 18154187 intergenic CG7330 + chr3L_4_18150001 chr3L_18150001 RAL-332 1221 chr3L 18306958 18306985 chr3L 18307039 18307060 18 80 9.5 7.0 8.2 2.0 102 chr3L 18306958 intergenic not near genes chr3L 18307009 intergenic not near genes chr3L 18307060 intergenic not near genes chr3L_18_18305001 chr3L_18305001 RAL-332 1222 chr3L 18343660 18343673 chr3L 18343938 18343942 4 272 2.0 2.0 2.0 1.3 282 chr3L 18343660 intergenic not near genes chr3L 18343801 intergenic not near genes chr3L 18343942 intergenic not near genes chr3L_4_18340001 chr3L_18340001 RAL-332 1223 chr3L 18345092 18345125 chr3L 18345170 18345203 5 74 0.5 4.0 2.2 1.6 111 chr3L 18345092 intergenic not near genes chr3L 18345148 intergenic not near genes chr3L 18345203 intergenic not near genes chr3L_5_18345001 chr3L_18345001 RAL-332 1224 chr3L 18376090 18376113 chr3L 18376177 18376200 10 86 1.5 0.0 0.8 5.6 110 chr3L 18376090 intergenic not near genes chr3L 18376145 intergenic not near genes chr3L 18376200 intergenic not near genes chr3L_10_18375001 chr3L_18375001 RAL-332 1225 chr3L 9013689 9013695 chr3L 18417066 18417066 8 9403374 38.0 32.5 35.2 0.2 9403377 chr3L 9013689 intron Doc2 - chr3L 13715378 intron bru-3 - chr3L 18417066 intergenic not near genes chr3L_8_13715001 chr3L_13715001 RAL-332 1226 chr3L 18423907 18423941 chr3L 18423987 18424021 4 74 1.5 5.0 3.2 1.0 114 chr3L 18423907 intergenic not near genes chr3L 18423964 intergenic not near genes chr3L 18424021 intergenic not near genes chr3L_4_18420001 chr3L_18420001 RAL-332 1227 chr3L 18436060 18436093 chr3L 18436158 18436181 6 94 3.5 0.5 2.0 2.0 121 chr3L 18436060 intergenic not near genes chr3L 18436120 intergenic not near genes chr3L 18436181 intergenic not near genes chr3L_6_18435001 chr3L_18435001 RAL-332 1228 chr3L 18456278 18456303 chr3L 18456365 18456391 10 87 1.5 6.5 4.0 2.0 113 chr3L 18456278 intergenic CR44670 - chr3L 18456334 intergenic CR44670 - chr3L 18456391 intergenic CR44670 - chr3L_10_18455001 chr3L_18455001 RAL-332 1229 chr3L 18464487 18464514 chr3L 18464573 18464594 14 82 5.0 6.5 5.8 2.1 107 chr3L 18464487 intergenic not near genes chr3L 18464540 intergenic not near genes chr3L 18464594 intergenic not near genes chr3L_14_18460001 chr3L_18460001 RAL-332 1230 chr3L 18465572 18465606 chr3L 18465681 18465701 23 107 6.0 3.5 4.8 4.0 129 chr3L 18465572 intergenic not near genes chr3L 18465636 intergenic not near genes chr3L 18465701 intergenic not near genes chr3L_23_18465001 chr3L_18465001 RAL-332 1231 chr3L 18512644 18512665 chr3L 18512926 18512935 11 280 6.5 5.5 6.0 1.6 291 chr3L 18512644 intergenic not near genes chr3L 18512790 intergenic not near genes chr3L 18512935 intergenic not near genes chr3L_11_18510001 chr3L_18510001 RAL-332 1232 chr3L 18528632 18528660 chr3L 18537792 18537821 roo 6 9160 1.0 4.0 2.5 1.7 9189 chr3L 18528632 intergenic not near genes chr3L 18533226 intergenic not near genes chr3L 18537821 intergenic not near genes chr3L_6_18530001 chr3L_18530001 RAL-332 1233 chr3L 18546703 18546737 chr3L 18546797 18546831 13 89 3.0 3.0 3.0 3.2 128 chr3L 18546703 intergenic not near genes chr3L 18546767 intergenic not near genes chr3L 18546831 intergenic not near genes chr3L_13_18545001 chr3L_18545001 RAL-332 1234 chr3L 18567041 18567054 chr3L 18567112 18567131 10 83 2.0 6.5 4.2 1.9 90 chr3L 18567041 intron AstC-R1 + chr3L 18567086 intron AstC-R1 + chr3L 18567131 intron AstC-R1 + chr3L_10_18565001 chr3L_18565001 RAL-332 1235 chr3L 18721773 18721803 chr3L 18721861 18721876 16 85 7.5 3.0 5.2 2.6 103 chr3L 18721773 intergenic CG12477 - chr3L 18721824 intergenic CG12477 - chr3L 18721876 intergenic CG12477 - chr3L_16_18720001 chr3L_18720001 RAL-332 1236 chr3L 18772408 18772442 chr3L 18781089 18781120 roo 11 8678 2.5 5.0 3.8 2.3 8712 chr3L 18772408 intron ftz-f1 - chr3L 18776764 intron ftz-f1 - chr3L 18781120 intron ftz-f1 - chr3L_11_18775001 chr3L_18775001 RAL-332 1237 chr3L 18788734 18788747 chr3L 18788812 18788824 4 78 1.0 0.5 0.8 2.2 90 chr3L 18788734 intron ftz-f1 - chr3L 18788779 intron ftz-f1 - chr3L 18788824 intron ftz-f1 - chr3L_4_18785001 chr3L_18785001 RAL-332 1238 chr3L 18810146 18810175 chr3L 18810223 18810250 7 72 0.5 1.0 0.8 3.9 104 chr3L 18810146 intron CG14073 - chr3L 18810198 intron CG14073 - chr3L 18810250 intron CG14073 - chr3L_7_18810001 chr3L_18810001 RAL-332 1239 chr3L 18833778 18833812 chr3L 18834942 18834961 1360 8 1162 1.5 5.0 3.2 1.9 1183 chr3L 18833778 intron Indy - chr3L 18834370 intron Indy - chr3L 18834961 intron Indy - chr3L_8_18830001 chr3L_18830001 RAL-332 1240 chr3L 18839735 18839766 chr3L 18839818 18839849 13 80 4.0 2.5 3.2 3.1 114 chr3L 18839735 intron Indy - chr3L 18839792 intron Indy - chr3L 18839849 intron Indy - chr3L_13_18835001 chr3L_18835001 RAL-332 1241 chr3L 18841373 18841391 chr3L 18841480 18841487 4 105 2.0 5.0 3.5 0.9 114 chr3L 18841373 intron Indy - chr3L 18841430 intron Indy - chr3L 18841487 intron Indy - chr3L_4_18840001 chr3L_18840001 RAL-332 1242 chr3L 18844041 18844061 chr3L 18844114 18844123 4 73 2.0 1.5 1.8 1.4 82 chr3L 18844041 intron Indy - chr3L 18844082 intron Indy - chr3L 18844123 intron Indy - chr3L_4_18840001 chr3L_18840001 RAL-332 1243 chr3L 18861763 18861799 chr3L 18861856 18861868 17 88 2.5 4.5 3.5 3.8 105 chr3L 18861763 intergenic not near genes chr3L 18861816 intergenic not near genes chr3L 18861868 intergenic not near genes chr3L_17_18860001 chr3L_18860001 RAL-332 1244 chr3L 6116764 6116766 chr3L 18879447 18879465 4 12762687 1.5 22.0 11.8 0.3 12762701 chr3L 6116764 intron Ets65A + chr3L 12498114 3` UTR CG10638 - chr3L 18879465 intron CG3961 - chr3L_4_12495001 chr3L_12495001 RAL-332 1245 chr3L 18933628 18933647 chr3L 18933722 18933727 4 90 3.5 3.5 3.5 0.9 99 chr3L 18933628 intron CG32204 - chr3L 18933678 intron CG32204 - chr3L 18933727 intron CG32204 - chr3L_4_18930001 chr3L_18930001 RAL-332 1246 chr3L 18942856 18942874 chr3L 18942968 18942987 7 108 5.0 4.0 4.5 1.3 131 chr3L 18942856 intron CG32204 - chr3L 18942922 intron CG32204 - chr3L 18942987 intron CG32204 - chr3L_7_18940001 chr3L_18940001 RAL-332 1247 chr3L 18984989 18985014 chr3L 18985060 18985073 17 68 4.5 4.5 4.5 3.1 84 chr3L 18984989 5` UTR CG14075 + chr3L 18985031 exon CG14075 + chr3L 18985073 exon CG14075 + chr3L_17_18985001 chr3L_18985001 RAL-332 1248 chr3L 19008844 19008876 chr3L 19009174 19009193 jockey 9 330 0.5 3.5 2.0 3.0 349 chr3L 19008844 intron nkd - chr3L 19009018 intron nkd - chr3L 19009193 intron nkd - chr3L_9_19005001 chr3L_19005001 RAL-332 1249 chr3L 19029457 19029479 chr3L 19029551 19029581 13 97 3.5 3.5 3.5 2.9 124 chr3L 19029457 intron nkd - chr3L 19029519 intron nkd - chr3L 19029581 intron nkd - chr3L_13_19025001 chr3L_19025001 RAL-332 1250 chr3L 19101728 19101743 chr3L 19102085 19102115 4 364 1.5 2.5 2.0 1.3 387 chr3L 19101728 intergenic not near genes chr3L 19101922 intergenic not near genes chr3L 19102115 intergenic not near genes chr3L_4_19100001 chr3L_19100001 RAL-332 1251 chr3L 19115635 19115675 chr3L 19115813 19115834 BS 11 174 6.0 5.0 5.5 1.7 199 chr3L 19115635 intron CG14082 - chr3L 19115734 intron CG14082 - chr3L 19115834 intron CG14082 - chr3L_11_19115001 chr3L_19115001 RAL-332 1252 chr3L 19117044 19117055 chr3L 19124491 19124502 mdg1 4 7446 12.0 8.0 10.0 0.4 7458 chr3L 19117044 intron CG14082 - chr3L 19120773 intron CG14082 - chr3L 19124502 intron CG14082 - chr3L_4_19120001 chr3L_19120001 RAL-332 1253 chr3L 19117057 19117076 chr3L 19124487 19124523 mdg1 14 7436 3.0 6.5 4.8 2.4 7466 chr3L 19117057 intron CG14082 - chr3L 19120790 intron CG14082 - chr3L 19124523 intron CG14082 - chr3L_14_19120001 chr3L_19120001 RAL-332 1254 chr3L 19138554 19138588 chr3L 19138635 19138669 18 77 5.0 7.0 6.0 2.6 115 chr3L 19138554 intron CG14082 - chr3L 19138612 intron CG14082 - chr3L 19138669 intron CG14082 - chr3L_18_19135001 chr3L_19135001 RAL-332 1255 chr3L 19182386 19182394 chr3L 19182467 19182468 4 79 0.5 3.0 1.8 1.4 82 chr3L 19182386 intron fz2 - chr3L 19182427 intron fz2 - chr3L 19182468 intron fz2 - chr3L_4_19180001 chr3L_19180001 RAL-332 1256 chr3L 19182395 19182420 chr3L 19182465 19182471 12 72 0.0 3.0 1.5 4.8 76 chr3L 19182395 intron fz2 - chr3L 19182433 intron fz2 - chr3L 19182471 intron fz2 - chr3L_12_19180001 chr3L_19180001 RAL-332 1257 chr3L 19208057 19208062 chr3L 19209431 19209436 Doc 4 1374 15.0 6.0 10.5 0.3 1379 chr3L 19208057 intron fz2 - chr3L 19208746 intron fz2 - chr3L 19209436 intron fz2 - chr3L_4_19205001 chr3L_19205001 RAL-332 1258 chr3L 19208066 19208089 chr3L 19209430 19209454 Doc 10 1370 4.5 5.5 5.0 1.7 1388 chr3L 19208066 intron fz2 - chr3L 19208760 intron fz2 - chr3L 19209454 intron fz2 - chr3L_10_19205001 chr3L_19205001 RAL-332 1259 chr3L 19244125 19244134 chr3L 19244192 19244198 5 72 6.5 4.5 5.5 0.8 73 chr3L 19244125 intergenic not near genes chr3L 19244162 intergenic not near genes chr3L 19244198 intergenic not near genes chr3L_5_19240001 chr3L_19240001 RAL-332 1260 chr3L 19249265 19249299 chr3L 19249346 19249379 30 75 8.0 3.5 5.8 4.4 114 chr3L 19249265 intergenic not near genes chr3L 19249322 intergenic not near genes chr3L 19249379 intergenic not near genes chr3L_30_19245001 chr3L_19245001 RAL-332 1261 chr3L 19365920 19365929 chr3L 19366003 19366019 4 88 0.0 5.5 2.8 1.1 99 chr3L 19365920 intron CG32206 - chr3L 19365970 intron CG32206 - chr3L 19366019 intron CG32206 - chr3L_4_19365001 chr3L_19365001 RAL-332 1262 chr3L 19458281 19458316 chr3L 19458389 19458415 17 104 2.0 4.5 3.2 4.0 134 chr3L 19458281 intergenic not near genes chr3L 19458348 intergenic not near genes chr3L 19458415 intergenic not near genes chr3L_17_19455001 chr3L_19455001 RAL-332 1263 chr3L 19848513 19848535 chr3L 19857692 19857724 roo 15 9186 3.0 6.0 4.5 2.7 9211 chr3L 19848513 intron Papss + chr3L 19853118 intron Papss + chr3L 19857724 intron Papss + chr3L_15_19850001 chr3L_19850001 RAL-332 1264 chr3L 19861825 19861852 chr3L 19863610 19863626 S-element 7 1783 4.5 3.0 3.8 1.5 1801 chr3L 19861825 5` UTR CR45433 + chr3L 19862726 intergenic not near genes chr3L 19863626 intergenic not near genes chr3L_7_19860001 chr3L_19860001 RAL-332 1265 chr3L 19933537 19933558 chr3L 19934358 19934380 8 820 4.0 3.5 3.8 1.7 843 chr3L 19933537 intergenic CR45678 + chr3L 19933958 5` UTR CR45678 + chr3L 19934380 intergenic CR45678 + chr3L_8_19930001 chr3L_19930001 RAL-332 1266 chr3L 19936668 19936686 chr3L 19936752 19936771 5 82 0.5 5.5 3.0 1.2 103 chr3L 19936668 intergenic not near genes chr3L 19936720 intergenic not near genes chr3L 19936771 intergenic not near genes chr3L_5_19935001 chr3L_19935001 RAL-332 1267 chr3L 20096086 20096112 chr3L 20096188 20096201 7 98 5.5 0.0 2.8 1.8 115 chr3L 20096086 intergenic not near genes chr3L 20096144 intergenic not near genes chr3L 20096201 intergenic not near genes chr3L_7_20095001 chr3L_20095001 RAL-332 1268 chr3L 20113474 20113509 chr3L 20113569 20113603 5 88 2.0 0.5 1.2 2.3 129 chr3L 20113474 intergenic not near genes chr3L 20113538 intergenic not near genes chr3L 20113603 intergenic not near genes chr3L_5_20110001 chr3L_20110001 RAL-332 1269 chr3L 20143081 20143112 chr3L 20143160 20143185 6 76 5.0 1.5 3.2 1.4 104 chr3L 20143081 intergenic not near genes chr3L 20143133 intergenic not near genes chr3L 20143185 intergenic not near genes chr3L_6_20140001 chr3L_20140001 RAL-332 1270 chr3L 20146349 20146366 chr3L 20146659 20146684 5 314 2.0 9.5 5.8 0.7 335 chr3L 20146349 intergenic not near genes chr3L 20146516 intergenic not near genes chr3L 20146684 intergenic not near genes chr3L_5_20145001 chr3L_20145001 RAL-332 1271 chr3L 20148285 20148312 chr3L 20148374 20148402 19 85 5.0 3.5 4.2 3.7 117 chr3L 20148285 intergenic not near genes chr3L 20148344 intergenic not near genes chr3L 20148402 intergenic not near genes chr3L_19_20145001 chr3L_20145001 RAL-332 1272 chr3L 20257335 20257359 chr3L 20258455 20258473 pogo 14 1118 2.5 8.0 5.2 2.3 1138 chr3L 20257335 intron rdgC + chr3L 20257904 intron rdgC + chr3L 20258473 intron rdgC + chr3L_14_20255001 chr3L_20255001 RAL-332 1273 chr3L 20262795 20262813 chr3L 20262907 20262924 13 112 12.0 7.5 9.8 1.2 129 chr3L 20262795 exon rdgC + chr3L 20262860 intron rdgC + chr3L 20262924 intron rdgC + chr3L_13_20260001 chr3L_20260001 RAL-332 1274 chr3L 20262815 20262829 chr3L 20262906 20262926 13 104 6.5 7.5 7.0 1.6 111 chr3L 20262815 exon rdgC + chr3L 20262870 intron rdgC + chr3L 20262926 intron rdgC + chr3L_13_20260001 chr3L_20260001 RAL-332 1275 chr3L 20386937 20386962 chr3L 20387039 20387056 11 94 5.0 3.5 4.2 2.1 119 chr3L 20386937 intron fbl + chr3L 20386996 intron fbl + chr3L 20387056 intron fbl + chr3L_11_20385001 chr3L_20385001 RAL-332 1276 chr3L 20431592 20431624 chr3L 20431745 20431759 20 148 5.0 8.5 6.8 2.6 167 chr3L 20431592 exon Las - chr3L 20431676 intron Las - chr3L 20431759 intron Las - chr3L_20_20430001 chr3L_20430001 RAL-332 1277 chr3L 20646164 20646171 chr3L 20646289 20646312 4 136 4.0 3.5 3.8 0.8 148 chr3L 20646164 intergenic not near genes chr3L 20646238 intergenic not near genes chr3L 20646312 intergenic not near genes chr3L_4_20645001 chr3L_20645001 RAL-332 1278 chr3L 20710757 20710784 chr3L 20710834 20710861 7 75 3.5 2.5 3.0 1.8 104 chr3L 20710757 intergenic not near genes chr3L 20710809 intergenic not near genes chr3L 20710861 intergenic not near genes chr3L_7_20710001 chr3L_20710001 RAL-332 1279 chr3L 20855436 20855442 chr3L 20855825 20855828 4 396 2.0 4.5 3.2 1.0 392 chr3L 20855436 intron CG32432 - chr3L 20855632 intron CG32432 - chr3L 20855828 intron CG32432 - chr3L_4_20855001 chr3L_20855001 RAL-332 1280 chr3L 20917091 20917123 chr3L 20917166 20917199 13 69 4.0 7.0 5.5 2.0 108 chr3L 20917091 intergenic not near genes chr3L 20917145 intergenic not near genes chr3L 20917199 intergenic not near genes chr3L_13_20915001 chr3L_20915001 RAL-332 1281 chr3L 20939308 20939315 chr3L 20939389 20939396 5 81 7.5 6.0 6.8 0.6 88 chr3L 20939308 intron fng - chr3L 20939352 intron fng - chr3L 20939396 intron fng - chr3L_5_20935001 chr3L_20935001 RAL-332 1282 chr3L 20939325 20939334 chr3L 20939386 20939414 4 70 5.5 4.5 5.0 0.7 89 chr3L 20939325 intron fng - chr3L 20939370 intron fng - chr3L 20939414 intron fng - chr3L_4_20935001 chr3L_20935001 RAL-332 1283 chr3L 21010381 21010393 chr3L 21010488 21010498 5 106 5.5 3.0 4.2 1.0 117 chr3L 21010381 intron skd - chr3L 21010440 intron skd - chr3L 21010498 intron skd - chr3L_5_21010001 chr3L_21010001 RAL-332 1284 chr3L 21014913 21014948 chr3L 21023394 21023400 Tirant 12 8475 7.0 4.5 5.8 1.8 8487 chr3L 21014913 intron skd - chr3L 21019156 intron skd - chr3L 21023400 intron skd - chr3L_12_21015001 chr3L_21015001 RAL-332 1285 chr3L 21040346 21040372 chr3L 21040795 21040818 10 448 1.5 4.0 2.8 2.6 472 chr3L 21040346 intron siz + chr3L 21040582 intron siz + chr3L 21040818 intron siz + chr3L_10_21040001 chr3L_21040001 RAL-332 1286 chr3L 21082210 21082240 chr3L 21082288 21082318 9 75 3.0 4.5 3.8 1.9 108 chr3L 21082210 intron ko - chr3L 21082264 intron ko - chr3L 21082318 intron ko - chr3L_9_21080001 chr3L_21080001 RAL-332 1287 chr3L 21151866 21151897 chr3L 21156946 21156970 flea 10 5079 3.5 1.5 2.5 2.9 5104 chr3L 21151866 intron Ac78C - chr3L 21154418 intron Ac78C - chr3L 21156970 intron Ac78C - chr3L_10_21150001 chr3L_21150001 RAL-332 1288 chr3L 21158595 21158629 chr3L 21158670 21158705 20 73 5.5 5.0 5.2 3.2 110 chr3L 21158595 intron Ac78C - chr3L 21158650 intron Ac78C - chr3L 21158705 intron Ac78C - chr3L_20_21155001 chr3L_21155001 RAL-332 1289 chr3L 21172836 21172871 chr3L 21172936 21172972 6 100 3.5 2.0 2.8 1.6 136 chr3L 21172836 intergenic chb +,asparagine-synthetase + chr3L 21172904 5` UTR chb + chr3L 21172972 5` UTR chb + chr3L_6_21170001 chr3L_21170001 RAL-332 1290 chr3L 21186052 21186084 chr3L 21186127 21186160 7 66 5.0 9.5 7.2 0.9 108 chr3L 21186052 intron CG42337 - chr3L 21186106 intron CG42337 - chr3L 21186160 intron CG42337 - chr3L_7_21185001 chr3L_21185001 RAL-332 1291 chr3L 21243747 21243778 chr3L 21251310 21251321 412 12 7558 4.5 8.0 6.2 1.7 7574 chr3L 21243747 intron Eip78C + chr3L 21247534 intron Eip78C + chr3L 21251321 intron Eip78C + chr3L_12_21245001 chr3L_21245001 RAL-332 1292 chr3L 21306162 21306180 chr3L 21315304 21315339 roo 4 9154 1.5 2.5 2.0 1.3 9177 chr3L 21306162 3` UTR,3` UTR CG7632 +,Pc - chr3L 21310750 intron Pc - chr3L 21315339 3` UTR Pc - chr3L_4_21310001 chr3L_21310001 RAL-332 1293 chr3L 21319528 21319557 chr3L 21319617 21319646 7 83 4.0 5.0 4.5 1.3 118 chr3L 21319528 5` UTR Rab26 + chr3L 21319587 5` UTR Rab26 + chr3L 21319646 5` UTR Rab26 + chr3L_7_21315001 chr3L_21315001 RAL-332 1294 chr3L 21406996 21407009 chr3L 21407075 21407088 5 79 6.5 3.0 4.8 0.9 92 chr3L 21406996 intron rgn + chr3L 21407042 intron rgn + chr3L 21407088 intron rgn + chr3L_5_21405001 chr3L_21405001 RAL-332 1295 chr3L 21498834 21498870 chr3L 21500470 21500490 1360 20 1628 7.0 2.0 4.5 3.6 1656 chr3L 21498834 intron Glg1 - chr3L 21499662 intron Glg1 - chr3L 21500490 intron Glg1 - chr3L_20_21495001 chr3L_21495001 RAL-332 1296 chr3L 21749315 21749328 chr3L 21754475 21754487 Doc 4 5157 10.5 10.5 10.5 0.3 5172 chr3L 21749315 intron Syn1 - chr3L 21751901 intron Syn1 - chr3L 21754487 intron Syn1 - chr3L_4_21750001 chr3L_21750001 RAL-332 1297 chr3L 21749329 21749345 chr3L 21754472 21754473 Doc 14 5153 3.5 9.5 6.5 1.9 5144 chr3L 21749329 intron Syn1 - chr3L 21751901 intron Syn1 - chr3L 21754473 intron Syn1 - chr3L_14_21750001 chr3L_21750001 RAL-332 1298 chr3L 21849500 21849532 chr3L 21849582 21849612 11 78 5.5 2.5 4.0 2.2 112 chr3L 21849500 intron mub + chr3L 21849556 intron mub + chr3L 21849612 intron mub + chr3L_11_21845001 chr3L_21845001 RAL-332 1299 chr3L 21852266 21852282 chr3L 21852349 21852375 5 88 7.0 3.5 5.2 0.8 109 chr3L 21852266 intron mub + chr3L 21852320 intron mub + chr3L 21852375 intron mub + chr3L_5_21850001 chr3L_21850001 RAL-332 1300 chr3L 21901024 21901045 chr3L 21901117 21901121 11 88 9.5 11.5 10.5 1.0 97 chr3L 21901024 intron mub + chr3L 21901072 intron mub + chr3L 21901121 intron mub + chr3L_11_21900001 chr3L_21900001 RAL-332 1301 chr3L 21952456 21952482 chr3L 21953195 21953209 transib1 7 738 1.0 3.0 2.0 2.3 753 chr3L 21952456 intergenic not near genes chr3L 21952832 intergenic not near genes chr3L 21953209 intergenic not near genes chr3L_7_21950001 chr3L_21950001 RAL-332 1302 chr3L 22016365 22016395 chr3L 22016481 22016507 11 110 5.0 2.0 3.5 2.4 142 chr3L 22016365 intergenic not near genes chr3L 22016436 intergenic not near genes chr3L 22016507 intergenic not near genes chr3L_11_22015001 chr3L_22015001 RAL-332 1303 chr3L 22033700 22033717 chr3L 22033778 22033795 5 76 3.0 2.5 2.8 1.3 95 chr3L 22033700 intergenic not near genes chr3L 22033748 intergenic not near genes chr3L 22033795 intergenic not near genes chr3L_5_22030001 chr3L_22030001 RAL-332 1304 chr3L 22046184 22046217 chr3L 22046287 22046314 10 96 3.0 3.0 3.0 2.5 130 chr3L 22046184 intron Oct-TyrR + chr3L 22046249 intron Oct-TyrR + chr3L 22046314 intron Oct-TyrR + chr3L_10_22045001 chr3L_22045001 RAL-332 1305 chr3L 22099680 22099708 chr3L 22105866 22105894 3S18 6 6184 3.0 1.5 2.2 1.9 6214 chr3L 22099680 intergenic not near genes chr3L 22102787 intergenic not near genes chr3L 22105894 intergenic not near genes chr3L_6_22100001 chr3L_22100001 RAL-332 1306 chr3L 22124953 22124982 chr3L 22125101 22125138 15 151 3.0 6.5 4.8 2.6 185 chr3L 22124953 intergenic not near genes chr3L 22125046 intergenic not near genes chr3L 22125138 intergenic not near genes chr3L_15_22125001 chr3L_22125001 RAL-332 1307 chr3L 22130507 22130517 chr3L 22130645 22130663 4 143 2.0 6.0 4.0 0.8 156 chr3L 22130507 intergenic not near genes chr3L 22130585 intergenic not near genes chr3L 22130663 intergenic not near genes chr3L_4_22130001 chr3L_22130001 RAL-332 1308 chr3L 22152193 22152206 chr3L 22152256 22152273 7 72 3.5 7.5 5.5 1.1 80 chr3L 22152193 intron olf413 + chr3L 22152233 intron olf413 + chr3L 22152273 intron olf413 + chr3L_7_22150001 chr3L_22150001 RAL-332 1309 chr3L 22166448 22166457 chr3L 22166526 22166535 4 76 7.0 3.0 5.0 0.7 87 chr3L 22166448 intron olf413 + chr3L 22166492 intron olf413 + chr3L 22166535 intron olf413 + chr3L_4_22165001 chr3L_22165001 RAL-332 1310 chr3L 22166461 22166474 chr3L 22166525 22166527 4 61 2.0 3.0 2.5 1.1 66 chr3L 22166461 intron olf413 + chr3L 22166494 intron olf413 + chr3L 22166527 intron olf413 + chr3L_4_22165001 chr3L_22165001 RAL-332 1311 chr3L 22179109 22179119 chr3L 22179176 22179196 4 68 4.5 4.0 4.2 0.8 87 chr3L 22179109 intron olf413 + chr3L 22179152 intron olf413 + chr3L 22179196 intron olf413 + chr3L_4_22175001 chr3L_22175001 RAL-332 1312 chr3L 22411369 22411398 chr3L 22411446 22411470 7 74 6.5 3.0 4.8 1.2 101 chr3L 22411369 intergenic not near genes chr3L 22411420 intergenic not near genes chr3L 22411470 intergenic not near genes chr3L_7_22410001 chr3L_22410001 RAL-332 1313 chr3L 22447215 22447234 chr3L 22447286 22447325 11 85 3.5 1.5 2.5 3.1 110 chr3L 22447215 intergenic not near genes chr3L 22447270 intergenic not near genes chr3L 22447325 intergenic not near genes chr3L_11_22445001 chr3L_22445001 RAL-332 1314 chr3L 22507123 22507133 chr3L 22507209 22507218 6 86 10.5 8.0 9.2 0.6 95 chr3L 22507123 intergenic not near genes chr3L 22507170 intergenic not near genes chr3L 22507218 intergenic not near genes chr3L_6_22505001 chr3L_22505001 RAL-332 1315 chr3L 22507138 22507154 chr3L 22507208 22507223 7 80 4.0 7.5 5.8 1.0 85 chr3L 22507138 intergenic not near genes chr3L 22507180 intergenic not near genes chr3L 22507223 intergenic not near genes chr3L_7_22505001 chr3L_22505001 RAL-332 1316 chr3L 22543727 22543758 chr3L 22543804 22543821 19 74 3.0 8.5 5.8 2.8 94 chr3L 22543727 intergenic not near genes chr3L 22543774 intergenic not near genes chr3L 22543821 intergenic not near genes chr3L_19_22540001 chr3L_22540001 RAL-332 1317 chr3L 22577619 22577634 chr3L 22582407 22582421 Doc 10 4787 9.5 10.0 9.8 0.9 4802 chr3L 22577619 intergenic not near genes chr3L 22580020 intergenic not near genes chr3L 22582421 3` UTR CG14459 - chr3L_10_22580001 chr3L_22580001 RAL-332 1318 chr3L 22577637 22577643 chr3L 22582405 22582431 Doc 8 4781 8.0 9.0 8.5 0.8 4794 chr3L 22577637 intergenic not near genes chr3L 22580034 intergenic not near genes chr3L 22582431 3` UTR CG14459 - chr3L_8_22580001 chr3L_22580001 RAL-332 1319 chr3L 22644834 22644846 chr3L 22645062 22645074 6 228 11.5 0.5 6.0 0.9 240 chr3L 22644834 intergenic CR45381 + chr3L 22644954 intergenic CR45381 + chr3L 22645074 intergenic not near genes chr3L_6_22640001 chr3L_22640001 RAL-332 1320 chr3L 22644848 22644869 chr3L 22645060 22645091 5 220 7.0 0.5 3.8 1.0 243 chr3L 22644848 intergenic CR45381 + chr3L 22644970 intergenic CR45381 + chr3L 22645091 intergenic not near genes chr3L_5_22640001 chr3L_22640001 RAL-332 1321 chr3L 22663206 22663230 chr3L 22663287 22663322 10 89 5.0 1.5 3.2 2.4 116 chr3L 22663206 intergenic not near genes chr3L 22663264 intergenic not near genes chr3L 22663322 intergenic not near genes chr3L_10_22660001 chr3L_22660001 RAL-332 1322 chr3L 22668040 22668078 chr3L 22668116 22668153 16 72 3.0 4.0 3.5 3.6 113 chr3L 22668040 3` UTR CR43270 - chr3L 22668096 3` UTR CR43270 - chr3L 22668153 3` UTR CR43270 - chr3L_16_22665001 chr3L_22665001 RAL-332 1323 chr3L 22682219 22682247 chr3L 22682319 22682347 15 97 3.5 7.5 5.5 2.3 128 chr3L 22682219 intergenic not near genes chr3L 22682283 intergenic not near genes chr3L 22682347 intergenic not near genes chr3L_15_22680001 chr3L_22680001 RAL-332 1324 chr3L 22774119 22774140 chr3L 22774204 22774230 16 90 7.5 5.5 6.5 2.1 111 chr3L 22774119 intron SPoCk + chr3L 22774174 intron SPoCk + chr3L 22774230 intron SPoCk + chr3L_16_22770001 chr3L_22770001 RAL-332 1325 chr3L 22865982 22866013 chr3L 22867113 22867137 Doc 8 1128 3.5 2.0 2.8 2.1 1155 chr3L 22865982 intron CG33170 + chr3L 22866560 intron CG33170 + chr3L 22867137 intron CG33170 + chr3L_8_22865001 chr3L_22865001 RAL-332 1326 chr3L 22885914 22885945 chr3L 22885990 22886021 21 74 7.0 4.0 5.5 3.2 107 chr3L 22885914 intron slif + chr3L 22885968 intron slif + chr3L 22886021 intron slif + chr3L_21_22885001 chr3L_22885001 RAL-332 1327 chr3L 22901244 22901271 chr3L 22901661 22901691 4 419 1.0 3.5 2.2 1.2 447 chr3L 22901244 intergenic not near genes chr3L 22901468 intergenic BoYb + chr3L 22901691 intergenic BoYb + chr3L_4_22900001 chr3L_22900001 RAL-332 1328 chr3L 22915171 22915199 chr3L 22915276 22915306 9 103 3.0 4.5 3.8 1.9 135 chr3L 22915171 intron CG12768 + chr3L 22915238 intron CG12768 + chr3L 22915306 intron CG12768 + chr3L_9_22915001 chr3L_22915001 RAL-332 1329 chr3L 22920936 22920959 chr3L 22921021 22921044 13 85 8.0 3.5 5.8 1.9 108 chr3L 22920936 intron CG12768 + chr3L 22920990 intron CG12768 + chr3L 22921044 intron CG12768 + chr3L_13_22920001 chr3L_22920001 RAL-332 1330 chr3L 22943712 22943742 chr3L 22943917 22943934 8 197 2.5 2.5 2.5 2.3 222 chr3L 22943712 intergenic not near genes chr3L 22943823 intergenic not near genes chr3L 22943934 intergenic not near genes chr3L_8_22940001 chr3L_22940001 RAL-332 1331 chr3L 22974361 22974395 chr3L 22974440 22974443 11 71 4.0 4.5 4.2 2.1 82 chr3L 22974361 intergenic not near genes chr3L 22974402 intergenic not near genes chr3L 22974443 intergenic not near genes chr3L_11_22970001 chr3L_22970001 RAL-332 1332 chr3L 22989877 22989887 chr3L 22996835 22996857 297 4 6969 6.0 4.0 5.0 0.7 6980 chr3L 22989877 intergenic not near genes chr3L 22993367 intergenic not near genes chr3L 22996857 intergenic not near genes chr3L_4_22990001 chr3L_22990001 RAL-332 1333 chr3L 23213283 23213308 chr3L 23213650 23213659 15 365 4.5 3.0 3.8 3.1 376 chr3L 23213283 intron nAChRalpha4 + chr3L 23213471 intron nAChRalpha4 + chr3L 23213659 intron nAChRalpha4 + chr3L_15_23210001 chr3L_23210001 RAL-332 1334 chr3L 23875537 23875558 chr3L 23875607 23875608 11 70 5.0 7.0 6.0 1.6 71 chr3L 23875537 intron CG40470 - chr3L 23875572 intron CG40470 - chr3L 23875608 intron CG40470 - chr3L_11_23875001 chr3L_23875001 RAL-332 1335 chr3L 23932488 23932501 chr3L 23932623 23932638 8 136 12.5 2.5 7.5 0.9 150 chr3L 23932488 intron CG40470 - chr3L 23932563 intron CG40470 - chr3L 23932638 intron CG40470 - chr3L_8_23930001 chr3L_23930001 RAL-332 1336 chr3L 23932502 23932520 chr3L 23932622 23932641 13 127 7.0 2.5 4.8 2.2 139 chr3L 23932502 intron CG40470 - chr3L 23932572 intron CG40470 - chr3L 23932641 intron CG40470 - chr3L_13_23930001 chr3L_23930001 RAL-332 1337 chr3L 24012416 24012435 chr3L 24020755 24020776 roo 4 8336 1.0 1.0 1.0 2.0 8360 chr3L 24012416 intergenic not near genes chr3L 24016596 intergenic not near genes chr3L 24020776 intergenic not near genes chr3L_4_24015001 chr3L_24015001 RAL-332 1338 chr3L 24021279 24021313 chr3L 24022436 24022456 1360 8 1155 3.5 5.0 4.2 1.5 1177 chr3L 24021279 intergenic not near genes chr3L 24021868 intergenic not near genes chr3L 24022456 intergenic not near genes chr3L_8_24020001 chr3L_24020001 RAL-332 1339 chr3L 24168795 24168803 chr3L 24176122 24176125 ZAM 4 7326 27.0 18.5 22.8 0.2 7330 chr3L 24168795 intron Snap25 + chr3L 24172460 intron Snap25 + chr3L 24176125 intron Snap25 + chr3L_4_24170001 chr3L_24170001 RAL-332 1340 chr3L 24168808 24168815 chr3L 24176118 24176141 ZAM 6 7320 12.0 17.0 14.5 0.4 7333 chr3L 24168808 intron Snap25 + chr3L 24172474 intron Snap25 + chr3L 24176141 intron Snap25 + chr3L_6_24170001 chr3L_24170001 RAL-332 1341 chr3L 25106587 25106597 chr3L 25106674 25106684 9 87 10.5 5.5 8.0 1.0 97 chr3L 25106587 intergenic not near genes chr3L 25106636 intergenic not near genes chr3L 25106684 intergenic not near genes chr3L_9_25105001 chr3L_25105001 RAL-332 1342 chr3L 25106598 25106614 chr3L 25106671 25106687 9 77 6.0 5.0 5.5 1.4 89 chr3L 25106598 intergenic not near genes chr3L 25106642 intergenic not near genes chr3L 25106687 intergenic not near genes chr3L_9_25105001 chr3L_25105001 RAL-332 1343 chr3L 25268558 25268590 chr3L 25268639 25268671 7 79 3.0 0.0 1.5 2.8 113 chr3L 25268558 intron CG40467 - chr3L 25268614 intron CG40467 - chr3L 25268671 intron CG40467 - chr3L_7_25265001 chr3L_25265001 RAL-332 1344 chr3L 25512796 25512809 chr3L 25512863 25512872 4 70 2.5 5.0 3.8 0.8 76 chr3L 25512796 intron CG41343 - chr3L 25512834 intron CG41343 - chr3L 25512872 intron CG41343 - chr3L_4_25510001 chr3L_25510001 RAL-332 1345 chr3L 25513582 25513595 chr3L 25513660 25513674 6 78 3.5 3.5 3.5 1.3 92 chr3L 25513582 intron CG41343 - chr3L 25513628 intron CG41343 - chr3L 25513674 intron CG41343 - chr3L_6_25510001 chr3L_25510001 RAL-332 1346 chr3L 25514886 25514904 chr3L 25514963 25514995 10 86 4.5 2.5 3.5 2.2 109 chr3L 25514886 intron CG41343 - chr3L 25514940 intron CG41343 - chr3L 25514995 intron CG41343 - chr3L_10_25510001 chr3L_25510001 RAL-332 1347 chr3L 25627823 25627834 chr3L 25627898 25627920 9 82 3.0 4.0 3.5 2.0 97 chr3L 25627823 intron CG41343 - chr3L 25627872 intron CG41343 - chr3L 25627920 intron CG41343 - chr3L_9_25625001 chr3L_25625001 RAL-332 1348 chr3L 25628502 25628526 chr3L 25633273 25633297 F-element 7 4768 2.0 2.0 2.0 2.3 4795 chr3L 25628502 intron CG41343 - chr3L 25630900 intron CG41343 - chr3L 25633297 intron CG41343 - chr3L_7_25630001 chr3L_25630001 RAL-332 1349 chr3L 25842488 25842500 chr3L 25842556 25842581 7 75 5.5 3.0 4.2 1.3 93 chr3L 25842488 intron CG40178 - chr3L 25842534 intron CG40178 - chr3L 25842581 intron CG40178 - chr3L_7_25840001 chr3L_25840001 RAL-332 1350 chr3L 25886869 25886881 chr3L 25887272 25887276 5 401 5.5 4.5 5.0 0.8 407 chr3L 25886869 intron CG40178 - chr3L 25887072 intron CG40178 - chr3L 25887276 intron CG40178 - chr3L_5_25885001 chr3L_25885001 RAL-332 1351 chr3L 25886882 25886895 chr3L 25887270 25887284 6 394 5.0 3.5 4.2 1.2 402 chr3L 25886882 intron CG40178 - chr3L 25887083 intron CG40178 - chr3L 25887284 intron CG40178 - chr3L_6_25885001 chr3L_25885001 RAL-332 1352 chr3L 26009427 26009453 chr3L 26009518 26009540 4 90 1.0 3.0 2.0 1.3 113 chr3L 26009427 intron CG40178 - chr3L 26009484 intron CG40178 - chr3L 26009540 intron CG40178 - chr3L_4_26005001 chr3L_26005001 RAL-332 1353 chr3L 26694931 26694953 chr3L 26695010 26695011 10 74 6.5 6.0 6.2 1.4 80 chr3L 26694931 intergenic not near genes chr3L 26694971 intergenic not near genes chr3L 26695011 intergenic not near genes chr3L_10_26690001 chr3L_26690001 RAL-332 1354 chr3L 26737992 26738007 chr3L 26738478 26738493 5 486 4.5 6.5 5.5 0.8 501 chr3L 26737992 intergenic not near genes chr3L 26738242 intergenic not near genes chr3L 26738493 intergenic not near genes chr3L_5_26735001 chr3L_26735001 RAL-332 1355 chr3L 27167945 27167979 chr3L 27168065 27168085 13 115 7.5 7.5 7.5 1.5 140 chr3L 27167945 intergenic not near genes chr3L 27168015 intergenic not near genes chr3L 27168085 intergenic not near genes chr3L_13_27165001 chr3L_27165001 RAL-332 1356 chr3L 27368887 27368910 chr3L 27369422 27369448 8 540 2.0 1.0 1.5 3.2 561 chr3L 27368887 intron Dbp80 + chr3L 27369168 intron Dbp80 + chr3L 27369448 intron Dbp80 + chr3L_8_27365001 chr3L_27365001 RAL-332 1357 chr3L 27390688 27390712 chr3L 27390767 27390791 14 78 31.0 34.0 32.5 0.4 103 chr3L 27390688 intron Dbp80 + chr3L 27390740 intron Dbp80 + chr3L 27390791 intron Dbp80 + chr3L_14_27390001 chr3L_27390001 RAL-332 1358 chr3L 27727641 27727649 chr3L 27728745 27728755 G-element 4 1106 11.0 9.5 10.2 0.4 1114 chr3L 27727641 intergenic not near genes chr3L 27728198 intergenic not near genes chr3L 27728755 intergenic not near genes chr3L_4_27725001 chr3L_27725001 RAL-332 1359 chr3L 27727650 27727672 chr3L 27728739 27728754 G-element 4 1090 6.0 9.0 7.5 0.5 1104 chr3L 27727650 intergenic not near genes chr3L 27728202 intergenic not near genes chr3L 27728754 intergenic not near genes chr3L_4_27725001 chr3L_27725001 RAL-332 1360 chr3R 1021764 1021766 chr3R 1022018 1022038 7 260 23.5 14.5 19.0 0.3 274 chr3R 1021764 intergenic not near genes chr3R 1021901 intergenic not near genes chr3R 1022038 intergenic not near genes chr3R_7_1020001 chr3R_1020001 RAL-332 1361 chr3R 1443442 1443454 chr3R 1443506 1443530 5 73 5.5 2.5 4.0 1.0 88 chr3R 1443442 intron CG40155 + chr3R 1443486 intron CG40155 + chr3R 1443530 intron CG40155 + chr3R_5_1440001 chr3R_1440001 RAL-332 1362 chr3R 1830027 1830038 chr3R 1836846 1836855 gypsy5 5 6826 1.0 1.5 1.2 2.3 6828 chr3R 1830027 intergenic not near genes chr3R 1833441 intergenic not near genes chr3R 1836855 intergenic not near genes chr3R_5_1830001 chr3R_1830001 RAL-332 1363 chr3R 1866435 1866444 chr3R 1866795 1866803 6 360 16.5 16.0 16.2 0.3 368 chr3R 1866435 intron CG42623 + chr3R 1866619 intron CG42623 + chr3R 1866803 intron CG42623 + chr3R_6_1865001 chr3R_1865001 RAL-332 1364 chr3R 1867168 1867175 chr3R 1954897 1954904 Doc3-element 8 87731 26.0 22.5 24.2 0.3 87736 chr3R 1867168 intron CG42623 + chr3R 1911036 intron CG42623 + chr3R 1954904 intergenic not near genes chr3R_8_1910001 chr3R_1910001 RAL-332 1365 chr3R 1953142 1953155 chr3R 1958538 1958551 Cr1a 7 5391 37.0 29.5 33.2 0.2 5409 chr3R 1953142 intergenic not near genes chr3R 1955846 intergenic not near genes chr3R 1958551 intergenic not near genes chr3R_7_1955001 chr3R_1955001 RAL-332 1366 chr3R 2534145 2534160 chr3R 2541701 2541709 13 7561 20.0 24.5 22.2 0.6 7564 chr3R 2534145 intergenic not near genes chr3R 2537927 intergenic not near genes chr3R 2541709 intergenic not near genes chr3R_13_2535001 chr3R_2535001 RAL-332 1367 chr3R 3267249 3267260 chr3R 3267430 3267457 8 189 17.5 25.5 21.5 0.4 208 chr3R 3267249 intergenic not near genes chr3R 3267353 intergenic not near genes chr3R 3267457 intergenic not near genes chr3R_8_3265001 chr3R_3265001 RAL-332 1368 chr3R 3752747 3752750 chr3R 3752830 3752833 4 83 5.5 6.0 5.8 0.6 86 chr3R 3752747 intergenic CG41128 + chr3R 3752790 intergenic CG41128 + chr3R 3752833 intergenic CG41128 + chr3R_4_3750001 chr3R_3750001 RAL-332 1369 chr3R 4012512 4012531 chr3R 4012589 4012606 11 84 4.5 4.5 4.5 2.0 94 chr3R 4012512 intergenic not near genes chr3R 4012559 intergenic not near genes chr3R 4012606 intergenic not near genes chr3R_11_4010001 chr3R_4010001 RAL-332 1370 chr3R 4063817 4063833 chr3R 4069083 4069098 11 5275 8.0 25.0 16.5 0.6 5281 chr3R 4063817 intergenic not near genes chr3R 4066458 intergenic not near genes chr3R 4069098 intergenic not near genes chr3R_11_4065001 chr3R_4065001 RAL-332 1371 chr3R 4206073 4206104 chr3R 4211644 4211679 mdg3 13 5571 2.5 1.0 1.8 4.6 5606 chr3R 4206073 intron CG14636 - chr3R 4208876 intron CG14636 - chr3R 4211679 intron CG14636 - chr3R_13_4205001 chr3R_4205001 RAL-332 1372 chr3R 4408417 4408437 chr3R 4412710 4412724 Juan 7 4298 3.0 1.5 2.2 2.2 4307 chr3R 4408417 intron CG32944 - chr3R 4410570 intron CG32944 - chr3R 4412724 intron CG32944 - chr3R_7_4410001 chr3R_4410001 RAL-332 1373 chr3R 4420819 4420833 chr3R 4420877 4420909 4 69 7.0 2.5 4.8 0.7 90 chr3R 4420819 intergenic not near genes chr3R 4420864 intergenic not near genes chr3R 4420909 intergenic not near genes chr3R_4_4420001 chr3R_4420001 RAL-332 1374 chr3R 4527590 4527612 chr3R 4528134 4528162 11 544 6.5 4.5 5.5 1.7 572 chr3R 4527590 intron CG34357 - chr3R 4527876 intron CG34357 - chr3R 4528162 intron CG34357 - chr3R_11_4525001 chr3R_4525001 RAL-332 1375 chr3R 4753240 4753271 chr3R 4757543 4757574 F-element 18 4298 12.0 9.5 10.8 1.5 4334 chr3R 4753240 intron,intron atms +,CG44098 - chr3R 4755407 intron,intron atms +,CG44098 - chr3R 4757574 intron,exon atms +,CG44098 - chr3R_18_4755001 chr3R_4755001 RAL-332 1376 chr3R 4861577 4861596 chr3R 4861646 4861664 9 72 6.5 4.0 5.2 1.5 87 chr3R 4861577 intron opa + chr3R 4861620 intron opa + chr3R 4861664 intron opa + chr3R_9_4860001 chr3R_4860001 RAL-332 1377 chr3R 4887490 4887504 chr3R 4894855 4894867 rover 5 7369 7.5 7.0 7.2 0.6 7377 chr3R 4887490 intergenic not near genes chr3R 4891178 intergenic not near genes chr3R 4894867 intergenic not near genes chr3R_5_4890001 chr3R_4890001 RAL-332 1378 chr3R 4904877 4904892 chr3R 18214681 18214690 9 13309802 17.5 11.0 14.2 0.6 13309813 chr3R 4904877 intergenic not near genes chr3R 11559784 3` UTR CG10898 + chr3R 18214690 3` UTR CG7985 + chr3R_9_11555001 chr3R_11555001 RAL-332 1379 chr3R 4948387 4948392 chr3R 4949003 4949009 6 619 5.0 22.0 13.5 0.4 622 chr3R 4948387 intergenic snRNA:U1:82Eb -,UbcD6 - chr3R 4948698 intergenic UbcD6 - chr3R 4949009 3` UTR UbcD6 - chr3R_6_4945001 chr3R_4945001 RAL-332 1380 chr3R 4966012 4966020 chr3R 4966102 4966112 7 91 7.5 5.5 6.5 0.9 100 chr3R 4966012 intron CG1124 + chr3R 4966062 intron CG1124 + chr3R 4966112 intron CG1124 + chr3R_7_4965001 chr3R_4965001 RAL-332 1381 chr3R 4966021 4966037 chr3R 4966099 4966127 9 89 4.0 4.0 4.0 1.8 106 chr3R 4966021 intron CG1124 + chr3R 4966074 intron CG1124 + chr3R 4966127 intron CG1124 + chr3R_9_4965001 chr3R_4965001 RAL-332 1382 chr3R 5000292 5000317 chr3R 5000395 5000408 12 102 5.0 2.5 3.8 2.5 116 chr3R 5000292 intron CG2022 - chr3R 5000350 intron CG2022 - chr3R 5000408 intron CG2022 - chr3R_12_5000001 chr3R_5000001 RAL-332 1383 chr3R 5038741 5038778 chr3R 5038823 5038860 23 78 4.5 8.0 6.2 3.2 119 chr3R 5038741 intergenic not near genes chr3R 5038800 intergenic not near genes chr3R 5038860 intergenic not near genes chr3R_23_5035001 chr3R_5035001 RAL-332 1384 chr3R 5045845 5045872 chr3R 5052947 5052974 HMS-Beagle 6 7101 6.5 1.0 3.8 1.2 7129 chr3R 5045845 intron CR43635 - chr3R 5049410 intergenic not near genes chr3R 5052974 intergenic CR45588 - chr3R_6_5045001 chr3R_5045001 RAL-332 1385 chr3R 5067979 5068008 chr3R 5073496 5073503 mdg3 10 5508 5.0 5.0 5.0 1.7 5524 chr3R 5067979 intergenic not near genes chr3R 5070741 intergenic not near genes chr3R 5073503 intergenic not near genes chr3R_10_5070001 chr3R_5070001 RAL-332 1386 chr3R 5105555 5105578 chr3R 5105631 5105638 4 67 3.5 6.5 5.0 0.7 83 chr3R 5105555 intergenic not near genes chr3R 5105596 intergenic not near genes chr3R 5105638 intergenic not near genes chr3R_4_5105001 chr3R_5105001 RAL-332 1387 chr3R 5236232 5236245 chr3R 5236348 5236372 7 123 4.5 5.5 5.0 1.2 140 chr3R 5236232 3` UTR,3` UTR Mms19 +,rtp - chr3R 5236302 3` UTR rtp - chr3R 5236372 3` UTR rtp - chr3R_7_5235001 chr3R_5235001 RAL-332 1388 chr3R 5250880 5250892 chr3R 5250992 5250994 6 109 10.5 6.5 8.5 0.6 114 chr3R 5250880 intron CG12163 - chr3R 5250937 intron CG12163 - chr3R 5250994 intron CG12163 - chr3R_6_5250001 chr3R_5250001 RAL-332 1389 chr3R 5250897 5250916 chr3R 5250991 5251026 7 107 4.5 6.5 5.5 1.1 129 chr3R 5250897 intron CG12163 - chr3R 5250962 intron CG12163 - chr3R 5251026 intron CG12163 - chr3R_7_5250001 chr3R_5250001 RAL-332 1390 chr3R 5278087 5278121 chr3R 5278168 5278196 15 75 3.0 6.0 4.5 2.7 109 chr3R 5278087 intron mtd - chr3R 5278142 intron mtd - chr3R 5278196 intron mtd - chr3R_15_5275001 chr3R_5275001 RAL-332 1391 chr3R 5338399 5338427 chr3R 5343570 5343590 Rt1c 12 5172 4.0 9.0 6.5 1.6 5191 chr3R 5338399 intron mtd - chr3R 5340994 intron mtd - chr3R 5343590 intron mtd - chr3R_12_5340001 chr3R_5340001 RAL-332 1392 chr3R 5385971 5386007 chr3R 5386142 5386173 15 169 5.0 10.5 7.8 1.7 202 chr3R 5385971 intron kkv - chr3R 5386072 intron kkv - chr3R 5386173 intron kkv - chr3R_15_5385001 chr3R_5385001 RAL-332 1393 chr3R 5445960 5445994 chr3R 5452420 5452454 Burdock 6 6459 0.0 2.0 1.0 3.0 6494 chr3R 5445960 intron CG14669 + chr3R 5449207 intron CG14669 + chr3R 5452454 intron CG14669 + chr3R_6_5445001 chr3R_5445001 RAL-332 1394 chr3R 5712087 5712113 chr3R 5712170 5712198 7 82 3.0 3.5 3.2 1.7 111 chr3R 5712087 3` UTR plx + chr3R 5712142 3` UTR plx + chr3R 5712198 3` UTR plx + chr3R_7_5710001 chr3R_5710001 RAL-332 1395 chr3R 5746028 5746046 chr3R 5746254 5746287 pogo 7 236 3.5 6.5 5.0 1.2 259 chr3R 5746028 3` UTR Madm + chr3R 5746158 3` UTR Madm + chr3R 5746287 3` UTR Madm + chr3R_7_5745001 chr3R_5745001 RAL-332 1396 chr3R 5747014 5747047 chr3R 5753204 5753237 diver 4 6185 0.5 1.0 0.8 2.2 6223 chr3R 5747014 intergenic Madm + chr3R 5750126 intergenic not near genes chr3R 5753237 intergenic CG2091 - chr3R_4_5750001 chr3R_5750001 RAL-332 1397 chr3R 5765633 5765661 chr3R 5765716 5765738 21 80 4.0 5.0 4.5 3.8 105 chr3R 5765633 intron CG2082 - chr3R 5765686 intron CG2082 - chr3R 5765738 intron CG2082 - chr3R_21_5765001 chr3R_5765001 RAL-332 1398 chr3R 5769231 5769265 chr3R 5769329 5769343 17 92 3.5 2.5 3.0 4.2 112 chr3R 5769231 intron CG2082 - chr3R 5769287 intron CG2082 - chr3R 5769343 intron CG2082 - chr3R_17_5765001 chr3R_5765001 RAL-332 1399 chr3R 5772384 5772404 chr3R 5772542 5772562 9 157 3.0 4.0 3.5 2.0 178 chr3R 5772384 intron CG2082 - chr3R 5772473 intron CG2082 - chr3R 5772562 intron CG2082 - chr3R_9_5770001 chr3R_5770001 RAL-332 1400 chr3R 5775927 5775950 chr3R 5776566 5776598 18 641 7.5 4.5 6.0 2.6 671 chr3R 5775927 intron CG2082 - chr3R 5776262 intron CG2082 - chr3R 5776598 intron CG2082 - chr3R_18_5775001 chr3R_5775001 RAL-332 1401 chr3R 5809119 5809145 chr3R 5809359 5809386 pogo 6 240 3.5 8.0 5.8 0.9 267 chr3R 5809119 3` UTR CG11000 + chr3R 5809252 3` UTR CG11000 + chr3R 5809386 3` UTR CG11000 + chr3R_6_5805001 chr3R_5805001 RAL-332 1402 chr3R 5822378 5822406 chr3R 5823544 5823557 1360 11 1161 5.5 6.5 6.0 1.6 1179 chr3R 5822378 3` UTR CG2023 - chr3R 5822968 3` UTR CG2023 - chr3R 5823557 3` UTR CG2023 - chr3R_11_5820001 chr3R_5820001 RAL-332 1403 chr3R 5927562 5927586 chr3R 5927802 5927826 pogo 10 238 6.0 4.5 5.2 1.6 264 chr3R 5927562 intron CG34113 - chr3R 5927694 intron CG34113 - chr3R 5927826 intron CG34113 - chr3R_10_5925001 chr3R_5925001 RAL-332 1404 chr3R 5931853 5931884 chr3R 5931924 5931940 16 70 9.5 4.0 6.8 2.1 87 chr3R 5931853 intron CG34113 - chr3R 5931896 intron CG34113 - chr3R 5931940 intron CG34113 - chr3R_16_5930001 chr3R_5930001 RAL-332 1405 chr3R 5968180 5968197 chr3R 5968257 5968277 5 79 7.0 7.0 7.0 0.6 97 chr3R 5968180 intergenic not near genes chr3R 5968228 intergenic not near genes chr3R 5968277 intergenic not near genes chr3R_5_5965001 chr3R_5965001 RAL-332 1406 chr3R 5989338 5989369 chr3R 5989418 5989452 7 80 3.0 4.5 3.8 1.5 114 chr3R 5989338 5` UTR CR44927 + chr3R 5989395 5` UTR CR44927 + chr3R 5989452 5` UTR CR44927 + chr3R_7_5985001 chr3R_5985001 RAL-332 1407 chr3R 6015970 6015995 chr3R 6024471 6024481 Tirant 10 8494 4.0 5.5 4.8 1.7 8511 chr3R 6015970 intergenic not near genes chr3R 6020226 intergenic not near genes chr3R 6024481 intergenic not near genes chr3R_10_6020001 chr3R_6020001 RAL-332 1408 chr3R 6051878 6051907 chr3R 6051959 6051988 15 80 4.0 1.5 2.8 3.9 110 chr3R 6051878 intergenic not near genes chr3R 6051933 intergenic not near genes chr3R 6051988 intergenic not near genes chr3R_15_6050001 chr3R_6050001 RAL-332 1409 chr3R 6158041 6158076 chr3R 6158390 6158411 14 345 3.5 4.5 4.0 2.8 370 chr3R 6158041 intergenic not near genes chr3R 6158226 intergenic not near genes chr3R 6158411 intergenic not near genes chr3R_14_6155001 chr3R_6155001 RAL-332 1410 chr3R 6158526 6158537 chr3R 6167091 6167101 Tirant 8 8578 10.0 7.5 8.8 0.8 8575 chr3R 6158526 intergenic not near genes chr3R 6162814 intergenic not near genes chr3R 6167101 intergenic CG1077 + chr3R_8_6160001 chr3R_6160001 RAL-332 1411 chr3R 6169759 6169785 chr3R 6169838 6169873 13 84 3.5 12.0 7.8 1.5 114 chr3R 6169759 exon CG1077 + chr3R 6169816 exon CG1077 + chr3R 6169873 exon CG1077 + chr3R_13_6165001 chr3R_6165001 RAL-332 1412 chr3R 6175193 6175204 chr3R 6182459 6182476 HMS-Beagle2 7 7267 2.0 4.5 3.2 1.7 7283 chr3R 6175193 intergenic Osi1 + chr3R 6178834 intron CR45194 + chr3R 6182476 intergenic CR45194 + chr3R_7_6175001 chr3R_6175001 RAL-332 1413 chr3R 6183486 6183507 chr3R 6183580 6183606 9 97 4.0 4.5 4.2 1.7 120 chr3R 6183486 intergenic not near genes chr3R 6183546 intergenic not near genes chr3R 6183606 intergenic not near genes chr3R_9_6180001 chr3R_6180001 RAL-332 1414 chr3R 6217015 6217029 chr3R 6217248 6217251 8 234 2.0 6.5 4.2 1.5 236 chr3R 6217015 intron Osi3 + chr3R 6217133 intron Osi3 + chr3R 6217251 intron Osi3 + chr3R_8_6215001 chr3R_6215001 RAL-332 1415 chr3R 6510023 6510054 chr3R 6515104 6515135 jockey 6 5075 1.5 0.5 1.0 3.0 5112 chr3R 6510023 intergenic not near genes chr3R 6512579 intergenic not near genes chr3R 6515135 intergenic not near genes chr3R_6_6510001 chr3R_6510001 RAL-332 1416 chr3R 6543836 6543865 chr3R 6543913 6543942 14 72 6.0 10.0 8.0 1.6 106 chr3R 6543836 intron dpr11 - chr3R 6543889 intron dpr11 - chr3R 6543942 intron dpr11 - chr3R_14_6540001 chr3R_6540001 RAL-332 1417 chr3R 6547635 6547657 chr3R 6547702 6547721 16 75 4.5 3.0 3.8 3.3 86 chr3R 6547635 intron dpr11 - chr3R 6547678 intron dpr11 - chr3R 6547721 intron dpr11 - chr3R_16_6545001 chr3R_6545001 RAL-332 1418 chr3R 6702007 6702033 chr3R 6705904 6705926 11 3894 34.0 11.5 22.8 0.5 3919 chr3R 6702007 3` UTR Ccp84Ab - chr3R 6703966 intergenic Ccp84Aa + chr3R 6705926 intergenic not near genes chr3R_11_6700001 chr3R_6700001 RAL-332 1419 chr3R 6737499 6737531 chr3R 6739284 6739314 Doc 7 1785 4.0 2.0 3.0 1.8 1815 chr3R 6737499 intron pb - chr3R 6738406 intron pb - chr3R 6739314 intron pb - chr3R_7_6735001 chr3R_6735001 RAL-332 1420 chr3R 6842778 6842811 chr3R 6842861 6842894 8 82 1.5 4.0 2.8 2.1 116 chr3R 6842778 intron Scr - chr3R 6842836 intron Scr - chr3R 6842894 intron Scr - chr3R_8_6840001 chr3R_6840001 RAL-332 1421 chr3R 6918072 6918093 chr3R 6918138 6918164 7 74 2.5 5.0 3.8 1.5 92 chr3R 6918072 intron Antp - chr3R 6918118 intron Antp - chr3R 6918164 intron Antp - chr3R_7_6915001 chr3R_6915001 RAL-332 1422 chr3R 7059594 7059606 chr3R 7060269 7060299 18 678 53.0 24.5 38.8 0.5 705 chr3R 7059594 exon dj + chr3R 7059946 exon dj + chr3R 7060299 3` UTR dj + chr3R_18_7055001 chr3R_7055001 RAL-332 1423 chr3R 7103283 7103309 chr3R 7103359 7103385 8 74 9.5 4.0 6.8 1.0 102 chr3R 7103283 intron Alh - chr3R 7103334 intron Alh - chr3R 7103385 intron Alh - chr3R_8_7100001 chr3R_7100001 RAL-332 1424 chr3R 7210607 7210618 chr3R 7210693 7210704 5 86 0.0 6.0 3.0 1.2 97 chr3R 7210607 intergenic not near genes chr3R 7210656 intergenic not near genes chr3R 7210704 intergenic not near genes chr3R_5_7210001 chr3R_7210001 RAL-332 1425 chr3R 7217458 7217485 chr3R 7217679 7217706 4 221 2.0 5.0 3.5 0.9 248 chr3R 7217458 intergenic CG14605 -,CG14606 - chr3R 7217582 intergenic CG14605 -,CG14606 - chr3R 7217706 3` UTR CG14605 - chr3R_4_7215001 chr3R_7215001 RAL-332 1426 chr3R 7377343 7377378 chr3R 7377516 7377551 12 168 4.0 7.0 5.5 1.8 208 chr3R 7377343 intergenic not near genes chr3R 7377447 intergenic not near genes chr3R 7377551 intergenic not near genes chr3R_12_7375001 chr3R_7375001 RAL-332 1427 chr3R 7412700 7412705 chr3R 7413176 7413181 5 489 5.0 8.0 6.5 0.7 481 chr3R 7412700 intergenic not near genes chr3R 7412940 intergenic not near genes chr3R 7413181 intergenic not near genes chr3R_5_7410001 chr3R_7410001 RAL-332 1428 chr3R 7425588 7425615 chr3R 7425685 7425712 6 94 7.0 4.0 5.5 0.9 124 chr3R 7425588 intergenic not near genes chr3R 7425650 intergenic not near genes chr3R 7425712 intergenic not near genes chr3R_6_7425001 chr3R_7425001 RAL-332 1429 chr3R 7446334 7446371 chr3R 7446717 7446741 10 381 1.0 5.5 3.2 2.4 407 chr3R 7446334 intergenic not near genes chr3R 7446538 intergenic not near genes chr3R 7446741 intergenic not near genes chr3R_10_7445001 chr3R_7445001 RAL-332 1430 chr3R 7447992 7448006 chr3R 7448070 7448084 5 76 7.5 4.0 5.8 0.7 92 chr3R 7447992 intergenic not near genes chr3R 7448038 intergenic not near genes chr3R 7448084 intergenic not near genes chr3R_5_7445001 chr3R_7445001 RAL-332 1431 chr3R 7448007 7448011 chr3R 7448069 7448087 4 71 7.0 4.0 5.5 0.6 80 chr3R 7448007 intergenic not near genes chr3R 7448047 intergenic not near genes chr3R 7448087 intergenic not near genes chr3R_4_7445001 chr3R_7445001 RAL-332 1432 chr3R 7480030 7480046 chr3R 7480091 7480125 6 76 6.0 5.0 5.5 0.9 95 chr3R 7480030 intergenic not near genes chr3R 7480078 intergenic not near genes chr3R 7480125 intergenic not near genes chr3R_6_7480001 chr3R_7480001 RAL-332 1433 chr3R 7545703 7545730 chr3R 7545921 7545943 9 216 3.0 2.5 2.8 2.4 240 chr3R 7545703 intergenic alpha-Est1 -,alpha-Est2 + chr3R 7545823 3` UTR alpha-Est1 - chr3R 7545943 3` UTR alpha-Est1 - chr3R_9_7545001 chr3R_7545001 RAL-332 1434 chr3R 7577451 7577486 chr3R 7577532 7577557 6 74 1.5 2.0 1.8 2.1 106 chr3R 7577451 intron CG34127 - chr3R 7577504 intron CG34127 - chr3R 7577557 intron CG34127 - chr3R_6_7575001 chr3R_7575001 RAL-332 1435 chr3R 7581590 7581621 chr3R 7581672 7581672 17 76 6.0 6.5 6.2 2.4 82 chr3R 7581590 intron CG34127 - chr3R 7581631 intron CG34127 - chr3R 7581672 intron CG34127 - chr3R_17_7580001 chr3R_7580001 RAL-332 1436 chr3R 7621530 7621556 chr3R 7621621 7621631 5 87 1.0 3.5 2.2 1.6 101 chr3R 7621530 intron CG34127 - chr3R 7621580 intron CG34127 - chr3R 7621631 intron CG34127 - chr3R_5_7620001 chr3R_7620001 RAL-332 1437 chr3R 7621557 7621563 chr3R 7621620 7621653 5 76 1.0 3.5 2.2 1.6 96 chr3R 7621557 intron CG34127 - chr3R 7621605 intron CG34127 - chr3R 7621653 intron CG34127 - chr3R_5_7620001 chr3R_7620001 RAL-332 1438 chr3R 7729476 7729496 chr3R 7737413 7737434 Stalker2 6 7937 1.5 5.5 3.5 1.3 7958 chr3R 7729476 intergenic not near genes chr3R 7733455 intergenic not near genes chr3R 7737434 intergenic not near genes chr3R_6_7730001 chr3R_7730001 RAL-332 1439 chr3R 7751378 7751412 chr3R 7751454 7751469 23 69 7.5 4.5 6.0 3.3 91 chr3R 7751378 intergenic not near genes chr3R 7751424 intergenic not near genes chr3R 7751469 intergenic not near genes chr3R_23_7750001 chr3R_7750001 RAL-332 1440 chr3R 7760009 7760034 chr3R 7760085 7760108 4 76 1.0 2.0 1.5 1.6 99 chr3R 7760009 intron Sp7 + chr3R 7760058 intron Sp7 + chr3R 7760108 intron Sp7 + chr3R_4_7760001 chr3R_7760001 RAL-332 1441 chr3R 7849651 7849672 chr3R 7850808 7850834 1360 8 1162 2.0 3.0 2.5 2.3 1183 chr3R 7849651 intron CG34384 + chr3R 7850242 intron CG34384 + chr3R 7850834 intron CG34384 + chr3R_8_7850001 chr3R_7850001 RAL-332 1442 chr3R 7857649 7857674 chr3R 7857732 7857742 6 79 2.5 4.5 3.5 1.3 93 chr3R 7857649 3` UTR CG17816 - chr3R 7857696 3` UTR CG17816 - chr3R 7857742 3` UTR CG17816 - chr3R_6_7855001 chr3R_7855001 RAL-332 1443 chr3R 8094409 8094438 chr3R 8099714 8099743 Transpac 8 5302 3.5 1.5 2.5 2.3 5334 chr3R 8094409 intron CG7900 + chr3R 8097076 intron CG7900 + chr3R 8099743 intron CG7900 + chr3R_8_8095001 chr3R_8095001 RAL-332 1444 chr3R 8101778 8101789 chr3R 8104846 8104853 G2 5 3077 2.5 4.5 3.5 1.1 3075 chr3R 8101778 exon CG7900 + chr3R 8103316 intron CG7900 + chr3R 8104853 3` UTR CG7900 + chr3R_5_8100001 chr3R_8100001 RAL-332 1445 chr3R 8107388 8107419 chr3R 8107521 8107552 11 128 2.5 3.0 2.8 2.9 164 chr3R 8107388 intron puc + chr3R 8107470 intron puc + chr3R 8107552 intron puc + chr3R_11_8105001 chr3R_8105001 RAL-332 1446 chr3R 8154294 8154313 chr3R 8154369 8154397 9 79 5.0 6.0 5.5 1.4 103 chr3R 8154294 intron grn - chr3R 8154346 intron grn - chr3R 8154397 intron grn - chr3R_9_8150001 chr3R_8150001 RAL-332 1447 chr3R 8207558 8207590 chr3R 8208399 8208432 F-element 9 838 4.5 5.0 4.8 1.6 874 chr3R 8207558 intergenic not near genes chr3R 8207995 intergenic not near genes chr3R 8208432 intergenic not near genes chr3R_9_8205001 chr3R_8205001 RAL-332 1448 chr3R 8247895 8247928 chr3R 8247977 8248010 8 74 2.0 1.0 1.5 3.2 115 chr3R 8247895 intron,intron CG18749 +,CG33722 + chr3R 8247952 intron,intron CG18749 +,CG33722 + chr3R 8248010 3` UTR,3` UTR CG18749 +,CG33722 + chr3R_8_8245001 chr3R_8245001 RAL-332 1449 chr3R 8339246 8339247 chr3R 21907534 21907536 24 13568289 25.0 28.0 26.5 0.9 13568290 chr3R 8339246 intergenic not near genes chr3R 15123391 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_24_15120001 chr3R_15120001 RAL-332 1450 chr3R 8403012 8403041 chr3R 8412171 8412189 roo 27 9158 6.0 6.5 6.2 3.8 9177 chr3R 8403012 intron CG45263 - chr3R 8407600 intron CG45263 - chr3R 8412189 intron CG45263 - chr3R_27_8405001 chr3R_8405001 RAL-332 1451 chr3R 8552367 8552380 chr3R 8552447 8552459 10 78 6.5 4.5 5.5 1.5 92 chr3R 8552367 intergenic Or85d + chr3R 8552413 intergenic Or85d + chr3R 8552459 intergenic Or85d + chr3R_10_8550001 chr3R_8550001 RAL-332 1452 chr3R 8552381 8552402 chr3R 8552446 8552471 10 72 3.0 4.5 3.8 2.1 90 chr3R 8552381 intergenic Or85d + chr3R 8552426 intergenic Or85d + chr3R 8552471 intergenic Or85d + chr3R_10_8550001 chr3R_8550001 RAL-332 1453 chr3R 8570477 8570509 chr3R 8575113 8575128 HMS-Beagle 18 4632 10.0 4.0 7.0 2.2 4651 chr3R 8570477 intergenic not near genes chr3R 8572802 intergenic not near genes chr3R 8575128 intergenic not near genes chr3R_18_8570001 chr3R_8570001 RAL-332 1454 chr3R 8601776 8601800 chr3R 8610918 8610952 roo 16 9148 10.5 6.0 8.2 1.7 9176 chr3R 8601776 intron 5-HT2B + chr3R 8606364 intron 5-HT2B + chr3R 8610952 intron 5-HT2B + chr3R_16_8605001 chr3R_8605001 RAL-332 1455 chr3R 8685298 8685315 chr3R 8685398 8685403 8 95 4.5 1.0 2.8 2.1 105 chr3R 8685298 intron CR44937 - chr3R 8685350 intron CR44937 - chr3R 8685403 intron CR44937 - chr3R_8_8685001 chr3R_8685001 RAL-332 1456 chr3R 8707357 8707389 chr3R 8709797 8709816 jockey 19 2437 6.0 5.5 5.8 2.8 2459 chr3R 8707357 intergenic not near genes chr3R 8708586 intergenic not near genes chr3R 8709816 intergenic not near genes chr3R_19_8705001 chr3R_8705001 RAL-332 1457 chr3R 8917896 8917906 chr3R 8917976 8917986 7 80 4.5 8.5 6.5 0.9 90 chr3R 8917896 intron pyd - chr3R 8917941 intron pyd - chr3R 8917986 intron pyd - chr3R_7_8915001 chr3R_8915001 RAL-332 1458 chr3R 9036374 9036390 chr3R 9036452 9036468 5 77 7.0 1.5 4.2 1.0 94 chr3R 9036374 intron neur - chr3R 9036421 intron neur - chr3R 9036468 intron neur - chr3R_5_9035001 chr3R_9035001 RAL-332 1459 chr3R 9083141 9083174 chr3R 9083225 9083259 17 82 2.0 6.0 4.0 3.4 118 chr3R 9083141 intron pum - chr3R 9083200 intron pum - chr3R 9083259 intron pum - chr3R_17_9080001 chr3R_9080001 RAL-332 1460 chr3R 9099475 9099482 chr3R 9099548 9099565 8 80 1.0 7.0 4.0 1.6 90 chr3R 9099475 intron pum - chr3R 9099520 intron pum - chr3R 9099565 intron pum - chr3R_8_9095001 chr3R_9095001 RAL-332 1461 chr3R 9204249 9204279 chr3R 9204336 9204366 13 82 5.0 6.0 5.5 2.0 117 chr3R 9204249 intron pum - chr3R 9204308 intron pum - chr3R 9204366 intron pum - chr3R_13_9200001 chr3R_9200001 RAL-332 1462 chr3R 9304537 9304554 chr3R 9311816 9311824 Stalker4 4 7277 12.0 2.0 7.0 0.5 7287 chr3R 9304537 intron CG8861 - chr3R 9308180 intron CG8861 - chr3R 9311824 intron CG8861 - chr3R_4_9305001 chr3R_9305001 RAL-332 1463 chr3R 9319578 9319609 chr3R 9320013 9320032 jockey 10 432 3.0 4.5 3.8 2.1 454 chr3R 9319578 intron CG8861 - chr3R 9319805 intron CG8861 - chr3R 9320032 intron CG8861 - chr3R_10_9315001 chr3R_9315001 RAL-332 1464 chr3R 9382817 9382832 chr3R 9382942 9382957 7 123 11.0 3.5 7.2 0.9 140 chr3R 9382817 intron FER - chr3R 9382887 intron FER - chr3R 9382957 intron FER - chr3R_7_9380001 chr3R_9380001 RAL-332 1465 chr3R 9382835 9382847 chr3R 9382941 9382967 5 119 8.0 3.5 5.8 0.7 132 chr3R 9382835 intron FER - chr3R 9382901 intron FER - chr3R 9382967 intron FER - chr3R_5_9380001 chr3R_9380001 RAL-332 1466 chr3R 9601470 9601493 chr3R 9601588 9601596 8 113 4.0 4.5 4.2 1.5 126 chr3R 9601470 intron CG8312 + chr3R 9601533 intron CG8312 + chr3R 9601596 intron CG8312 + chr3R_8_9600001 chr3R_9600001 RAL-332 1467 chr3R 9614987 9614992 chr3R 9615067 9615072 4 80 8.0 11.5 9.8 0.4 85 chr3R 9614987 intron CG8312 + chr3R 9615030 intron CG8312 + chr3R 9615072 intron CG8312 + chr3R_4_9615001 chr3R_9615001 RAL-332 1468 chr3R 9699974 9700004 chr3R 9700062 9700092 1360 12 82 4.5 5.5 5.0 2.0 118 chr3R 9699974 intron Unc-115a - chr3R 9700033 intron Unc-115a - chr3R 9700092 intron Unc-115a - chr3R_12_9700001 chr3R_9700001 RAL-332 1469 chr3R 10174120 10174152 chr3R 10174202 10174234 14 80 6.0 5.0 5.5 2.2 114 chr3R 10174120 intron CG12814 - chr3R 10174177 intron CG12814 - chr3R 10174234 intron CG12814 - chr3R_14_10170001 chr3R_10170001 RAL-332 1470 chr3R 10277143 10277160 chr3R 10277212 10277240 7 73 4.0 3.5 3.8 1.5 97 chr3R 10277143 intron CG43143 + chr3R 10277192 intron CG43143 + chr3R 10277240 intron CG43143 + chr3R_7_10275001 chr3R_10275001 RAL-332 1471 chr3R 10428582 10428610 chr3R 10428771 10428817 7 193 0.5 0.0 0.2 5.8 235 chr3R 10428582 intergenic not near genes chr3R 10428700 intergenic not near genes chr3R 10428817 intergenic not near genes chr3R_7_10425001 chr3R_10425001 RAL-332 1472 chr3R 10531869 10531900 chr3R 10531949 10531981 11 78 4.0 3.0 3.5 2.4 112 chr3R 10531869 intron hth - chr3R 10531925 intron hth - chr3R 10531981 intron hth - chr3R_11_10530001 chr3R_10530001 RAL-332 1473 chr3R 10593458 10593462 chr3R 10593519 10593547 6 81 2.0 6.0 4.0 1.2 89 chr3R 10593458 intron hth - chr3R 10593502 intron hth - chr3R 10593547 intron hth - chr3R_6_10590001 chr3R_10590001 RAL-332 1474 chr3R 10641593 10641625 chr3R 10641671 10641704 10 76 3.0 3.5 3.2 2.4 111 chr3R 10641593 5` UTR CR44018 + chr3R 10641648 5` UTR CR44018 + chr3R 10641704 5` UTR CR44018 + chr3R_10_10640001 chr3R_10640001 RAL-332 1475 chr3R 10723764 10723794 chr3R 10723856 10723880 17 91 5.5 1.5 3.5 3.8 116 chr3R 10723764 intergenic not near genes chr3R 10723822 intergenic not near genes chr3R 10723880 intergenic not near genes chr3R_17_10720001 chr3R_10720001 RAL-332 1476 chr3R 10727652 10727679 chr3R 10727721 10727759 14 75 4.0 3.0 3.5 3.1 107 chr3R 10727652 intergenic not near genes chr3R 10727706 intergenic not near genes chr3R 10727759 intergenic not near genes chr3R_14_10725001 chr3R_10725001 RAL-332 1477 chr3R 10745434 10745453 chr3R 10745513 10745540 8 81 4.5 5.0 4.8 1.4 106 chr3R 10745434 intron TkR86C - chr3R 10745487 intron TkR86C - chr3R 10745540 intron TkR86C - chr3R_8_10745001 chr3R_10745001 RAL-332 1478 chr3R 10886882 10886887 chr3R 10886962 10886967 4 80 3.5 6.5 5.0 0.7 85 chr3R 10886882 intron Leash + chr3R 10886924 intron Leash + chr3R 10886967 intron Leash + chr3R_4_10885001 chr3R_10885001 RAL-332 1479 chr3R 10886888 10886906 chr3R 10886955 10886986 10 76 2.5 6.0 4.2 1.9 98 chr3R 10886888 intron Leash + chr3R 10886937 intron Leash + chr3R 10886986 intron Leash + chr3R_10_10885001 chr3R_10885001 RAL-332 1480 chr3R 10914777 10914785 chr3R 10914854 10914857 6 76 12.5 8.0 10.2 0.5 80 chr3R 10914777 intergenic not near genes chr3R 10914817 intergenic not near genes chr3R 10914857 intergenic not near genes chr3R_6_10910001 chr3R_10910001 RAL-332 1481 chr3R 10914792 10914804 chr3R 10914849 10914881 6 70 7.5 6.0 6.8 0.8 89 chr3R 10914792 intergenic not near genes chr3R 10914836 intergenic not near genes chr3R 10914881 intergenic not near genes chr3R_6_10910001 chr3R_10910001 RAL-332 1482 chr3R 10919694 10919718 chr3R 10919761 10919791 14 69 2.5 2.5 2.5 4.0 97 chr3R 10919694 intergenic not near genes chr3R 10919742 intergenic not near genes chr3R 10919791 intergenic not near genes chr3R_14_10915001 chr3R_10915001 RAL-332 1483 chr3R 10920043 10920079 chr3R 10920121 10920157 8 77 1.0 2.0 1.5 3.2 114 chr3R 10920043 intergenic not near genes chr3R 10920100 intergenic not near genes chr3R 10920157 intergenic not near genes chr3R_8_10920001 chr3R_10920001 RAL-332 1484 chr3R 11056899 11056909 chr3R 11056972 11056987 4 77 4.5 0.0 2.2 1.2 88 chr3R 11056899 intergenic not near genes chr3R 11056943 intergenic not near genes chr3R 11056987 intergenic not near genes chr3R_4_11055001 chr3R_11055001 RAL-332 1485 chr3R 11059003 11059007 chr3R 11059117 11059120 4 114 2.5 7.5 5.0 0.7 117 chr3R 11059003 intergenic not near genes chr3R 11059062 intergenic not near genes chr3R 11059120 intergenic not near genes chr3R_4_11055001 chr3R_11055001 RAL-332 1486 chr3R 11059010 11059025 chr3R 11059115 11059122 8 110 2.5 6.0 4.2 1.5 112 chr3R 11059010 intergenic not near genes chr3R 11059066 intergenic not near genes chr3R 11059122 intergenic not near genes chr3R_8_11055001 chr3R_11055001 RAL-332 1487 chr3R 11059450 11059475 chr3R 11059514 11059544 5 72 3.0 1.0 2.0 1.7 94 chr3R 11059450 intergenic not near genes chr3R 11059497 intergenic not near genes chr3R 11059544 intergenic not near genes chr3R_5_11055001 chr3R_11055001 RAL-332 1488 chr3R 11085471 11085482 chr3R 11085546 11085559 5 75 0.0 4.0 2.0 1.7 88 chr3R 11085471 3` UTR CR44940 - chr3R 11085515 intergenic CR44940 - chr3R 11085559 intergenic CR44940 - chr3R_5_11085001 chr3R_11085001 RAL-332 1489 chr3R 11085778 11085798 chr3R 11086073 11086086 5 290 4.0 2.0 3.0 1.2 308 chr3R 11085778 intergenic CR44940 - chr3R 11085932 intergenic CR44940 - chr3R 11086086 intergenic not near genes chr3R_5_11085001 chr3R_11085001 RAL-332 1490 chr3R 11085799 11085806 chr3R 11086070 11086086 5 283 2.5 2.0 2.2 1.6 287 chr3R 11085799 intergenic CR44940 - chr3R 11085942 intergenic CR44940 - chr3R 11086086 intergenic not near genes chr3R_5_11085001 chr3R_11085001 RAL-332 1491 chr3R 11130814 11130833 chr3R 11130985 11131004 13 170 7.0 6.5 6.8 1.7 190 chr3R 11130814 intergenic not near genes chr3R 11130909 intergenic not near genes chr3R 11131004 intergenic not near genes chr3R_13_11130001 chr3R_11130001 RAL-332 1492 chr3R 11144175 11144201 chr3R 11144553 11144579 9 376 2.0 4.0 3.0 2.2 404 chr3R 11144175 intergenic CheA86a - chr3R 11144377 3` UTR CheA86a - chr3R 11144579 exon CheA86a - chr3R_9_11140001 chr3R_11140001 RAL-332 1493 chr3R 11174605 11174613 chr3R 11175311 11175327 7 710 37.0 34.5 35.8 0.2 722 chr3R 11174605 exon Ugt86Dj - chr3R 11174966 intron Ugt86Dj - chr3R 11175327 exon Ugt86Dj - chr3R_7_11170001 chr3R_11170001 RAL-332 1494 chr3R 11261228 11261250 chr3R 11261324 11261340 12 93 7.5 5.0 6.2 1.7 112 chr3R 11261228 intergenic not near genes chr3R 11261284 intergenic not near genes chr3R 11261340 intergenic not near genes chr3R_12_11260001 chr3R_11260001 RAL-332 1495 chr3R 11342541 11342571 chr3R 11342617 11342641 8 75 5.0 3.5 4.2 1.5 100 chr3R 11342541 intron pros + chr3R 11342591 intron pros + chr3R 11342641 intron pros + chr3R_8_11340001 chr3R_11340001 RAL-332 1496 chr3R 11379239 11379263 chr3R 11388389 11388418 roo 10 9151 6.0 5.0 5.5 1.5 9179 chr3R 11379239 intron pros + chr3R 11383828 intron pros + chr3R 11388418 intron pros + chr3R_10_11380001 chr3R_11380001 RAL-332 1497 chr3R 11454574 11454602 chr3R 11454892 11454922 7 318 4.0 6.0 5.0 1.2 348 chr3R 11454574 intron,intron CG17230 +,PGRP-LB - chr3R 11454748 intron,intron CG17230 +,PGRP-LB - chr3R 11454922 intron,intron CG17230 +,PGRP-LB - chr3R_7_11450001 chr3R_11450001 RAL-332 1498 chr3R 11518819 11518847 chr3R 11518910 11518937 17 89 4.0 6.0 5.0 2.8 118 chr3R 11518819 intergenic not near genes chr3R 11518878 intergenic not near genes chr3R 11518937 intergenic not near genes chr3R_17_11515001 chr3R_11515001 RAL-332 1499 chr3R 11694724 11694741 chr3R 11694817 11694834 6 91 3.0 1.0 2.0 2.0 110 chr3R 11694724 intergenic Fer3 - chr3R 11694779 intergenic Fer3 - chr3R 11694834 intergenic not near genes chr3R_6_11690001 chr3R_11690001 RAL-332 1500 chr3R 11695741 11695771 chr3R 11695822 11695852 20 78 5.0 5.5 5.2 3.2 111 chr3R 11695741 intergenic not near genes chr3R 11695796 intergenic not near genes chr3R 11695852 intergenic not near genes chr3R_20_11695001 chr3R_11695001 RAL-332 1501 chr3R 11710214 11710238 chr3R 11710286 11710316 17 73 4.5 4.0 4.2 3.3 102 chr3R 11710214 intergenic not near genes chr3R 11710265 intergenic not near genes chr3R 11710316 intergenic not near genes chr3R_17_11710001 chr3R_11710001 RAL-332 1502 chr3R 11734169 11734190 chr3R 11734280 11734294 15 110 5.5 4.0 4.8 2.6 125 chr3R 11734169 intergenic not near genes chr3R 11734232 intergenic not near genes chr3R 11734294 intergenic not near genes chr3R_15_11730001 chr3R_11730001 RAL-332 1503 chr3R 11763932 11763945 chr3R 11763993 11764025 9 74 2.5 6.5 4.5 1.6 93 chr3R 11763932 5` UTR Lk6 - chr3R 11763978 5` UTR Lk6 - chr3R 11764025 5` UTR Lk6 - chr3R_9_11760001 chr3R_11760001 RAL-332 1504 chr3R 11841062 11841100 chr3R 11846249 11846291 BS 19 5188 3.0 3.0 3.0 4.8 5229 chr3R 11841062 intron CG6959 - chr3R 11843676 intron CG6959 - chr3R 11846291 intron CG6959 - chr3R_19_11840001 chr3R_11840001 RAL-332 1505 chr3R 11853437 11853458 chr3R 11853586 11853589 4 142 3.5 4.5 4.0 0.8 152 chr3R 11853437 intron CG6959 - chr3R 11853513 intron CG6959 - chr3R 11853589 intron CG6959 - chr3R_4_11850001 chr3R_11850001 RAL-332 1506 chr3R 11853768 11853801 chr3R 11853872 11853906 7 103 4.0 4.5 4.2 1.3 138 chr3R 11853768 intron CG6959 - chr3R 11853837 intron CG6959 - chr3R 11853906 intron CG6959 - chr3R_7_11850001 chr3R_11850001 RAL-332 1507 chr3R 11919305 11919331 chr3R 11919393 11919419 16 85 7.5 4.0 5.8 2.4 114 chr3R 11919305 intron Cad87A - chr3R 11919362 intron Cad87A - chr3R 11919419 intron Cad87A - chr3R_16_11915001 chr3R_11915001 RAL-332 1508 chr3R 11957857 11957879 chr3R 11958137 11958153 S-element 7 278 0.0 0.5 0.2 5.8 296 chr3R 11957857 intergenic not near genes chr3R 11958005 intergenic not near genes chr3R 11958153 intergenic not near genes chr3R_7_11955001 chr3R_11955001 RAL-332 1509 chr3R 12044666 12044690 chr3R 12044935 12044967 7 273 1.0 4.5 2.8 1.8 301 chr3R 12044666 intergenic not near genes chr3R 12044816 intergenic not near genes chr3R 12044967 intergenic not near genes chr3R_7_12040001 chr3R_12040001 RAL-332 1510 chr3R 12080877 12080897 chr3R 12080942 12080974 12 71 6.5 4.5 5.5 1.8 97 chr3R 12080877 intron CG14741 - chr3R 12080926 intron CG14741 - chr3R 12080974 intron CG14741 - chr3R_12_12080001 chr3R_12080001 RAL-332 1511 chr3R 12086752 12086775 chr3R 12086831 12086864 11 81 2.0 1.0 1.5 4.4 112 chr3R 12086752 intron CG14741 - chr3R 12086808 intron CG14741 - chr3R 12086864 intron CG14741 - chr3R_11_12085001 chr3R_12085001 RAL-332 1512 chr3R 12102872 12102880 chr3R 12102972 12102981 4 101 9.0 15.5 12.2 0.3 109 chr3R 12102872 intron dpr17 + chr3R 12102926 intron dpr17 + chr3R 12102981 intron dpr17 + chr3R_4_12100001 chr3R_12100001 RAL-332 1513 chr3R 12214350 12214372 chr3R 12214428 12214463 19 86 7.0 2.5 4.8 3.3 113 chr3R 12214350 3` UTR CG4848 - chr3R 12214406 3` UTR CG4848 - chr3R 12214463 3` UTR CG4848 - chr3R_19_12210001 chr3R_12210001 RAL-332 1514 chr3R 12365200 12365210 chr3R 12365406 12365415 6 205 10.5 9.0 9.8 0.6 215 chr3R 12365200 exon GstD10 - chr3R 12365308 exon GstD10 - chr3R 12365415 exon GstD10 - chr3R_6_12365001 chr3R_12365001 RAL-332 1515 chr3R 12365211 12365233 chr3R 12365405 12365421 12 202 4.0 7.5 5.8 1.8 210 chr3R 12365211 exon GstD10 - chr3R 12365316 exon GstD10 - chr3R 12365421 exon GstD10 - chr3R_12_12365001 chr3R_12365001 RAL-332 1516 chr3R 12666773 12666803 chr3R 12666900 12666917 7 123 7.5 8.0 7.8 0.8 144 chr3R 12666773 intron CG14395 + chr3R 12666845 intron CG14395 + chr3R 12666917 intron CG14395 + chr3R_7_12665001 chr3R_12665001 RAL-332 1517 chr3R 12706462 12706497 chr3R 12715774 12715811 10 9317 63.5 41.5 52.5 0.2 9349 chr3R 12706462 exon mus308 - chr3R 12711136 exon mus308 - chr3R 12715811 intron Men - chr3R_10_12710001 chr3R_12710001 RAL-332 1518 chr3R 12725966 12725970 chr3R 12726047 12726075 5 90 4.5 2.0 3.2 1.2 109 chr3R 12725966 intergenic not near genes chr3R 12726020 intergenic not near genes chr3R 12726075 intergenic not near genes chr3R_5_12725001 chr3R_12725001 RAL-332 1519 chr3R 12733474 12733509 chr3R 12733551 12733584 13 74 5.5 3.0 4.2 2.5 110 chr3R 12733474 intergenic not near genes chr3R 12733529 intergenic not near genes chr3R 12733584 intergenic not near genes chr3R_13_12730001 chr3R_12730001 RAL-332 1520 chr3R 12787940 12787951 chr3R 12788023 12788026 5 79 2.5 2.0 2.2 1.6 86 chr3R 12787940 intergenic not near genes chr3R 12787983 intergenic not near genes chr3R 12788026 intergenic not near genes chr3R_5_12785001 chr3R_12785001 RAL-332 1521 chr3R 12876955 12876980 chr3R 12877038 12877054 6 79 5.5 3.5 4.5 1.1 99 chr3R 12876955 intergenic not near genes chr3R 12877004 intergenic not near genes chr3R 12877054 intergenic not near genes chr3R_6_12875001 chr3R_12875001 RAL-332 1522 chr3R 12920156 12920182 chr3R 12925357 12925369 copia 13 5201 4.0 6.0 5.0 2.2 5213 chr3R 12920156 intron beat-Vb + chr3R 12922762 intron beat-Vb + chr3R 12925369 intron beat-Vb + chr3R_13_12920001 chr3R_12920001 RAL-332 1523 chr3R 13061882 13061906 chr3R 13061977 13062001 8 87 3.5 2.0 2.8 2.1 119 chr3R 13061882 intron sim + chr3R 13061942 intron sim + chr3R 13062001 intron sim + chr3R_8_13060001 chr3R_13060001 RAL-332 1524 chr3R 13067102 13067135 chr3R 13067178 13067211 6 76 0.5 1.0 0.8 3.3 109 chr3R 13067102 intron sim + chr3R 13067156 intron sim + chr3R 13067211 intron sim + chr3R_6_13065001 chr3R_13065001 RAL-332 1525 chr3R 13075363 13075386 chr3R 13075444 13075458 5 76 1.0 1.0 1.0 2.5 95 chr3R 13075363 intron sim + chr3R 13075410 intron sim + chr3R 13075458 intron sim + chr3R_5_13075001 chr3R_13075001 RAL-332 1526 chr3R 13135832 13135854 chr3R 13138005 13138025 pogo 10 2174 5.5 7.5 6.5 1.3 2193 chr3R 13135832 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13136928 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13138025 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_10_13135001 chr3R_13135001 RAL-332 1527 chr3R 13143041 13143065 chr3R 13148608 13148641 mdg3 14 5569 7.0 8.0 7.5 1.6 5600 chr3R 13143041 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13145841 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13148641 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_14_13145001 chr3R_13145001 RAL-332 1528 chr3R 13205409 13205442 chr3R 13205490 13205508 13 74 6.0 4.0 5.0 2.2 99 chr3R 13205409 intergenic not near genes chr3R 13205458 intergenic not near genes chr3R 13205508 intergenic not near genes chr3R_13_13205001 chr3R_13205001 RAL-332 1529 chr3R 13248658 13248680 chr3R 13248753 13248767 4 92 4.0 2.0 3.0 1.0 109 chr3R 13248658 intron Ace - chr3R 13248712 intron Ace - chr3R 13248767 intron Ace - chr3R_4_13245001 chr3R_13245001 RAL-332 1530 chr3R 13252271 13252292 chr3R 13252340 13252347 10 72 1.0 6.5 3.8 2.1 76 chr3R 13252271 intron Ace - chr3R 13252309 intron Ace - chr3R 13252347 intron Ace - chr3R_10_13250001 chr3R_13250001 RAL-332 1531 chr3R 13305659 13305684 chr3R 13305746 13305765 6 82 1.5 2.0 1.8 2.1 106 chr3R 13305659 intron CG32473 + chr3R 13305712 intron CG32473 + chr3R 13305765 intron CG32473 + chr3R_6_13305001 chr3R_13305001 RAL-332 1532 chr3R 13306124 13306153 chr3R 13306511 13306537 8 384 2.5 1.0 1.8 2.9 413 chr3R 13306124 intron CG32473 + chr3R 13306330 intron CG32473 + chr3R 13306537 intron CG32473 + chr3R_8_13305001 chr3R_13305001 RAL-332 1533 chr3R 13314103 13314121 chr3R 13318886 13318900 Doc 5 4781 2.5 0.5 1.5 2.0 4797 chr3R 13314103 intergenic not near genes chr3R 13316502 intergenic not near genes chr3R 13318900 intergenic CG45080 - chr3R_5_13315001 chr3R_13315001 RAL-332 1534 chr3R 13323964 13323990 chr3R 13324066 13324101 19 108 4.5 5.5 5.0 3.2 137 chr3R 13323964 intergenic not near genes chr3R 13324032 intergenic not near genes chr3R 13324101 intergenic not near genes chr3R_19_13320001 chr3R_13320001 RAL-332 1535 chr3R 13326948 13326963 chr3R 13327029 13327058 4 84 4.5 4.0 4.2 0.8 110 chr3R 13326948 intergenic not near genes chr3R 13327003 intergenic not near genes chr3R 13327058 intergenic not near genes chr3R_4_13325001 chr3R_13325001 RAL-332 1536 chr3R 13356097 13356123 chr3R 13356182 13356208 11 81 2.5 7.0 4.8 1.9 111 chr3R 13356097 intergenic not near genes chr3R 13356152 intergenic not near genes chr3R 13356208 intergenic not near genes chr3R_11_13355001 chr3R_13355001 RAL-332 1537 chr3R 13391632 13391666 chr3R 13391708 13391742 11 73 3.5 4.0 3.8 2.3 110 chr3R 13391632 intron CCHa2 - chr3R 13391687 intron CCHa2 - chr3R 13391742 intron CCHa2 - chr3R_11_13390001 chr3R_13390001 RAL-332 1538 chr3R 13484335 13484364 chr3R 13484416 13484445 13 78 4.0 5.0 4.5 2.4 110 chr3R 13484335 intergenic not near genes chr3R 13484390 intergenic not near genes chr3R 13484445 intergenic not near genes chr3R_13_13480001 chr3R_13480001 RAL-332 1539 chr3R 13552184 13552198 chr3R 13552382 13552396 8 197 2.0 5.5 3.8 1.7 212 chr3R 13552184 intergenic not near genes chr3R 13552290 intergenic not near genes chr3R 13552396 intergenic not near genes chr3R_8_13550001 chr3R_13550001 RAL-332 1540 chr3R 13558036 13558051 chr3R 13558123 13558138 6 85 6.5 9.5 8.0 0.7 102 chr3R 13558036 intergenic not near genes chr3R 13558087 intergenic not near genes chr3R 13558138 intergenic not near genes chr3R_6_13555001 chr3R_13555001 RAL-332 1541 chr3R 13659722 13659737 chr3R 13659828 13659843 4 106 0.0 0.0 0.0 4.0 121 chr3R 13659722 intron Hrb87F - chr3R 13659782 intron Hrb87F - chr3R 13659843 intron Hrb87F - chr3R_4_13655001 chr3R_13655001 RAL-332 1542 chr3R 13672946 13672952 chr3R 13673024 13673030 4 77 7.0 2.5 4.8 0.7 84 chr3R 13672946 intron Task6 - chr3R 13672988 intron Task6 - chr3R 13673030 intron Task6 - chr3R_4_13670001 chr3R_13670001 RAL-332 1543 chr3R 13693028 13693028 chr3R 21907534 21907536 27 8214507 12.0 28.0 20.0 1.3 8214508 chr3R 13693028 3` UTR flfl + chr3R 17800282 exon CG17803 - chr3R 21907536 intergenic CG6678 + chr3R_27_17800001 chr3R_17800001 RAL-332 1544 chr3R 13714309 13714334 chr3R 13714528 13714553 9 214 3.5 2.5 3.0 2.2 244 chr3R 13714309 intergenic CR34044 - chr3R 13714431 intergenic CR34044 - chr3R 13714553 intergenic CR34044 - chr3R_9_13710001 chr3R_13710001 RAL-332 1545 chr3R 13880545 13880579 chr3R 13880666 13880700 11 117 4.5 7.0 5.8 1.6 155 chr3R 13880545 intergenic not near genes chr3R 13880622 intergenic not near genes chr3R 13880700 intergenic not near genes chr3R_11_13880001 chr3R_13880001 RAL-332 1546 chr3R 14021654 14021680 chr3R 14023469 14023496 S-element 5 1816 3.5 1.0 2.2 1.6 1842 chr3R 14021654 intron rdx - chr3R 14022575 intron rdx - chr3R 14023496 intron rdx - chr3R_5_14020001 chr3R_14020001 RAL-332 1547 chr3R 14067141 14067155 chr3R 14067220 14067234 6 77 5.0 3.5 4.2 1.2 93 chr3R 14067141 exon foxo + chr3R 14067188 intron foxo + chr3R 14067234 intron foxo + chr3R_6_14065001 chr3R_14065001 RAL-332 1548 chr3R 14068592 14068608 chr3R 14068677 14068692 6 83 6.0 3.5 4.8 1.0 100 chr3R 14068592 intron foxo + chr3R 14068642 intron foxo + chr3R 14068692 intron foxo + chr3R_6_14065001 chr3R_14065001 RAL-332 1549 chr3R 14075006 14075036 chr3R 14075103 14075132 15 91 3.0 8.0 5.5 2.3 126 chr3R 14075006 intron foxo + chr3R 14075069 intron foxo + chr3R 14075132 intron foxo + chr3R_15_14075001 chr3R_14075001 RAL-332 1550 chr3R 14093767 14093789 chr3R 14093837 14093865 15 72 5.0 4.5 4.8 2.6 98 chr3R 14093767 intron CCHa1 - chr3R 14093816 intron CCHa1 - chr3R 14093865 intron CCHa1 - chr3R_15_14090001 chr3R_14090001 RAL-332 1551 chr3R 14166685 14166699 chr3R 14167314 14167323 8 636 6.5 8.5 7.5 0.9 638 chr3R 14166685 3` UTR Dop1R1 - chr3R 14167004 3` UTR Dop1R1 - chr3R 14167323 3` UTR Dop1R1 - chr3R_8_14165001 chr3R_14165001 RAL-332 1552 chr3R 14194433 14194437 chr3R 14203582 14203586 roo 7 9149 15.0 3.0 9.0 0.7 9153 chr3R 14194433 intron Dop1R1 - chr3R 14199010 intron Dop1R1 - chr3R 14203586 intron Dop1R1 - chr3R_7_14195001 chr3R_14195001 RAL-332 1553 chr3R 14194443 14194460 chr3R 14203576 14203595 roo 8 9143 6.5 3.0 4.8 1.4 9152 chr3R 14194443 intron Dop1R1 - chr3R 14199019 intron Dop1R1 - chr3R 14203595 intron Dop1R1 - chr3R_8_14195001 chr3R_14195001 RAL-332 1554 chr3R 14246392 14246415 chr3R 14247886 14247899 jockey 7 1489 8.5 5.0 6.8 0.9 1507 chr3R 14246392 intergenic not near genes chr3R 14247146 intergenic not near genes chr3R 14247899 intergenic not near genes chr3R_7_14245001 chr3R_14245001 RAL-332 1555 chr3R 14364061 14364086 chr3R 14364137 14364161 12 71 7.0 3.5 5.2 1.9 100 chr3R 14364061 intron NK7.1 - chr3R 14364111 intron NK7.1 - chr3R 14364161 intron NK7.1 - chr3R_12_14360001 chr3R_14360001 RAL-332 1556 chr3R 14565540 14565572 chr3R 14565670 14565705 10 125 2.5 5.0 3.8 2.1 165 chr3R 14565540 intergenic CG14852 + chr3R 14565622 intergenic CG14852 + chr3R 14565705 intergenic CG14852 + chr3R_10_14565001 chr3R_14565001 RAL-332 1557 chr3R 14608454 14608477 chr3R 14608546 14608568 8 89 1.0 4.5 2.8 2.1 114 chr3R 14608454 intergenic stumps + chr3R 14608511 intergenic stumps + chr3R 14608568 intergenic stumps + chr3R_8_14605001 chr3R_14605001 RAL-332 1558 chr3R 14704386 14704420 chr3R 14704462 14704476 18 71 3.5 5.5 4.5 3.3 90 chr3R 14704386 intron kibra - chr3R 14704431 intron kibra - chr3R 14704476 intron kibra - chr3R_18_14700001 chr3R_14700001 RAL-332 1559 chr3R 14840943 14840960 chr3R 14841029 14841046 13 84 13.5 7.5 10.5 1.1 103 chr3R 14840943 intron btsz - chr3R 14840994 intron btsz - chr3R 14841046 intron btsz - chr3R_13_14840001 chr3R_14840001 RAL-332 1560 chr3R 14840962 14840974 chr3R 14841028 14841048 11 82 8.5 7.0 7.8 1.2 86 chr3R 14840962 intron btsz - chr3R 14841005 intron btsz - chr3R 14841048 intron btsz - chr3R_11_14840001 chr3R_14840001 RAL-332 1561 chr3R 14898478 14898505 chr3R 14898598 14898625 5 114 3.0 2.0 2.5 1.4 147 chr3R 14898478 intergenic Nup93-2 -,CG3817 + chr3R 14898552 intergenic Nup93-2 -,CG3817 + chr3R 14898625 intergenic CG3817 +,Nup93-2 - chr3R_5_14895001 chr3R_14895001 RAL-332 1562 chr3R 14911567 14911598 chr3R 14911670 14911704 16 98 2.5 3.0 2.8 4.2 137 chr3R 14911567 intergenic not near genes chr3R 14911636 intergenic not near genes chr3R 14911704 intergenic not near genes chr3R_16_14910001 chr3R_14910001 RAL-332 1563 chr3R 14973588 14973621 chr3R 14974072 14974086 19 481 4.5 4.5 4.5 3.5 498 chr3R 14973588 intergenic not near genes chr3R 14973837 intergenic not near genes chr3R 14974086 intergenic not near genes chr3R_19_14970001 chr3R_14970001 RAL-332 1564 chr3R 15006860 15006889 chr3R 15007239 15007268 13 377 6.0 5.5 5.8 1.9 408 chr3R 15006860 intergenic not near genes chr3R 15007064 intergenic not near genes chr3R 15007268 intergenic not near genes chr3R_13_15005001 chr3R_15005001 RAL-332 1565 chr3R 15037002 15037032 chr3R 15037086 15037116 10 82 7.0 4.0 5.5 1.5 114 chr3R 15037002 intergenic RpL10Aa + chr3R 15037059 intergenic RpL10Aa + chr3R 15037116 intergenic RpL10Aa + chr3R_10_15035001 chr3R_15035001 RAL-332 1566 chr3R 15041424 15041459 chr3R 15045192 15045226 Doc 13 3764 1.5 3.0 2.2 4.1 3802 chr3R 15041424 intergenic not near genes chr3R 15043325 intergenic not near genes chr3R 15045226 intergenic not near genes chr3R_13_15040001 chr3R_15040001 RAL-332 1567 chr3R 15058611 15058622 chr3R 15058690 15058701 6 78 12.5 10.0 11.2 0.5 90 chr3R 15058611 intron dpr9 - chr3R 15058656 intron dpr9 - chr3R 15058701 intron dpr9 - chr3R_6_15055001 chr3R_15055001 RAL-332 1568 chr3R 15058626 15058640 chr3R 15058684 15058704 13 68 10.0 9.0 9.5 1.2 78 chr3R 15058626 intron dpr9 - chr3R 15058665 intron dpr9 - chr3R 15058704 intron dpr9 - chr3R_13_15055001 chr3R_15055001 RAL-332 1569 chr3R 15079827 15079836 chr3R 15080051 15080077 pogo 6 236 2.5 1.0 1.8 2.1 250 chr3R 15079827 3` UTR CG6966 - chr3R 15079952 3` UTR CG6966 - chr3R 15080077 3` UTR CG6966 - chr3R_6_15075001 chr3R_15075001 RAL-332 1570 chr3R 15084151 15084176 chr3R 15084283 15084306 6 129 2.0 2.0 2.0 2.0 155 chr3R 15084151 intron CG6966 - chr3R 15084228 intron CG6966 - chr3R 15084306 intron CG6966 - chr3R_6_15080001 chr3R_15080001 RAL-332 1571 chr3R 15120298 15120324 chr3R 15120840 15120863 12 539 6.5 0.5 3.5 2.7 565 chr3R 15120298 intron CG42788 - chr3R 15120580 intron CG42788 - chr3R 15120863 intron CG42788 - chr3R_12_15120001 chr3R_15120001 RAL-332 1572 chr3R 15132065 15132088 chr3R 15135115 15135148 Juan 7 3050 3.0 6.0 4.5 1.3 3083 chr3R 15132065 intergenic CG42788 - chr3R 15133606 intergenic not near genes chr3R 15135148 3` UTR CG6912 - chr3R_7_15130001 chr3R_15130001 RAL-332 1573 chr3R 15162553 15162562 chr3R 15167314 15167330 F-element 5 4765 4.0 2.0 3.0 1.2 4777 chr3R 15162553 intron Gyc88E + chr3R 15164942 intron Gyc88E + chr3R 15167330 intron Gyc88E + chr3R_5_15160001 chr3R_15160001 RAL-332 1574 chr3R 15286984 15286989 chr3R 21907534 21907536 19 6620547 22.0 28.0 25.0 0.7 6620552 chr3R 15286984 intron Tm1 + chr3R 18597260 intron,exon qin +,CG14304 - chr3R 21907536 intergenic CG6678 + chr3R_19_18595001 chr3R_18595001 RAL-332 1575 chr3R 15416246 15416284 chr3R 15416326 15416364 11 79 1.5 6.0 3.8 2.3 118 chr3R 15416246 3` UTR Atx2 + chr3R 15416305 3` UTR Atx2 + chr3R 15416364 3` UTR Atx2 + chr3R_11_15415001 chr3R_15415001 RAL-332 1576 chr3R 15466199 15466219 chr3R 15466272 15466292 4 78 30.0 26.5 28.2 0.1 93 chr3R 15466199 intron AdamTS-A - chr3R 15466246 intron AdamTS-A - chr3R 15466292 intron AdamTS-A - chr3R_4_15465001 chr3R_15465001 RAL-332 1577 chr3R 15601165 15601173 chr3R 15608687 15608692 412 6 7521 15.0 8.5 11.8 0.5 7527 chr3R 15601165 intergenic not near genes chr3R 15604928 intergenic not near genes chr3R 15608692 intergenic not near genes chr3R_6_15600001 chr3R_15600001 RAL-332 1578 chr3R 15601177 15601195 chr3R 15608686 15608703 412 13 7515 8.0 8.5 8.2 1.4 7526 chr3R 15601177 intergenic not near genes chr3R 15604940 intergenic not near genes chr3R 15608703 intergenic not near genes chr3R_13_15600001 chr3R_15600001 RAL-332 1579 chr3R 15618740 15618764 chr3R 15626203 15626238 blood 6 7470 3.0 3.5 3.2 1.4 7498 chr3R 15618740 intergenic not near genes chr3R 15622489 intergenic not near genes chr3R 15626238 intergenic not near genes chr3R_6_15620001 chr3R_15620001 RAL-332 1580 chr3R 15691184 15691328 chr3R 15691289 15691413 4 96 0.0 0.0 0.0 4.0 229 chr3R 15691184 intergenic not near genes chr3R 15691298 intergenic not near genes chr3R 15691413 intergenic not near genes chr3R_4_15690001 chr3R_15690001 RAL-332 1581 chr3R 15868939 15868961 chr3R 15869019 15869041 6 80 4.5 0.0 2.2 1.9 102 chr3R 15868939 intron CG31183 - chr3R 15868990 intron CG31183 - chr3R 15869041 intron CG31183 - chr3R_6_15865001 chr3R_15865001 RAL-332 1582 chr3R 15871520 15871531 chr3R 15871626 15871652 5 114 5.5 10.0 7.8 0.6 132 chr3R 15871520 intron CG31183 - chr3R 15871586 intron CG31183 - chr3R 15871652 intron CG31183 - chr3R_5_15870001 chr3R_15870001 RAL-332 1583 chr3R 15892651 15892680 chr3R 15892732 15892761 5 81 9.0 3.5 6.2 0.7 110 chr3R 15892651 intron CG14877 - chr3R 15892706 intron CG14877 - chr3R 15892761 intron CG14877 - chr3R_5_15890001 chr3R_15890001 RAL-332 1584 chr3R 16048864 16048883 chr3R 16048940 16048973 6 76 6.5 8.5 7.5 0.7 109 chr3R 16048864 intron ird5 - chr3R 16048918 intron ird5 - chr3R 16048973 intron ird5 - chr3R_6_16045001 chr3R_16045001 RAL-332 1585 chr3R 16225094 16225103 chr3R 16225174 16225188 4 84 6.0 3.5 4.8 0.7 94 chr3R 16225094 intergenic not near genes chr3R 16225141 intergenic not near genes chr3R 16225188 intergenic tara + chr3R_4_16225001 chr3R_16225001 RAL-332 1586 chr3R 16246538 16246557 chr3R 16246602 16246633 5 68 2.0 6.5 4.2 1.0 95 chr3R 16246538 intron tara + chr3R 16246586 intron tara + chr3R 16246633 intron tara + chr3R_5_16245001 chr3R_16245001 RAL-332 1587 chr3R 16374293 16374330 chr3R 16374410 16374447 6 117 4.5 2.0 3.2 1.4 154 chr3R 16374293 intergenic ss - chr3R 16374370 intergenic ss - chr3R 16374447 3` UTR ss - chr3R_6_16370001 chr3R_16370001 RAL-332 1588 chr3R 16471226 16471255 chr3R 16471324 16471353 8 96 8.0 1.5 4.8 1.4 127 chr3R 16471226 exon CSN5 + chr3R 16471290 3` UTR CSN5 + chr3R 16471353 3` UTR CSN5 + chr3R_8_16470001 chr3R_16470001 RAL-332 1589 chr3R 16472579 16472604 chr3R 16472655 16472660 14 68 10.0 7.5 8.8 1.4 81 chr3R 16472579 intergenic Gyc-89Da + chr3R 16472620 5` UTR Gyc-89Da + chr3R 16472660 5` UTR Gyc-89Da + chr3R_14_16470001 chr3R_16470001 RAL-332 1590 chr3R 16538258 16538261 chr3R 16538794 16538799 5 539 5.0 5.5 5.2 0.8 541 chr3R 16538258 intron CG42342 + chr3R 16538528 intron CG42342 + chr3R 16538799 intron CG42342 + chr3R_5_16535001 chr3R_16535001 RAL-332 1591 chr3R 16538263 16538274 chr3R 16538792 16538796 4 533 3.5 4.5 4.0 0.8 533 chr3R 16538263 intron CG42342 + chr3R 16538530 intron CG42342 + chr3R 16538796 intron CG42342 + chr3R_4_16535001 chr3R_16535001 RAL-332 1592 chr3R 16555330 16555364 chr3R 16555423 16555446 16 89 10.0 6.5 8.2 1.7 116 chr3R 16555330 intron CG42342 + chr3R 16555388 intron CG42342 + chr3R 16555446 intron CG42342 + chr3R_16_16555001 chr3R_16555001 RAL-332 1593 chr3R 16729275 16729286 chr3R 16729346 16729350 4 71 5.0 8.0 6.5 0.5 75 chr3R 16729275 intron Ubx - chr3R 16729312 intron Ubx - chr3R 16729350 intron Ubx - chr3R_4_16725001 chr3R_16725001 RAL-332 1594 chr3R 16756317 16756348 chr3R 16762508 16762539 diver 13 6183 4.5 3.0 3.8 2.7 6222 chr3R 16756317 intron bxd - chr3R 16759428 intron bxd - chr3R 16762539 intron bxd - chr3R_13_16755001 chr3R_16755001 RAL-332 1595 chr3R 16860345 16860366 chr3R 16860416 16860444 6 72 1.0 2.0 1.5 2.4 99 chr3R 16860345 intron iab-8 - chr3R 16860394 intron iab-8 - chr3R 16860444 intron iab-8 - chr3R_6_16860001 chr3R_16860001 RAL-332 1596 chr3R 17012966 17012983 chr3R 17013041 17013059 7 74 4.0 9.5 6.8 0.9 93 chr3R 17012966 intergenic CG8907 + chr3R 17013012 intergenic CG8907 + chr3R 17013059 intergenic not near genes chr3R_7_17010001 chr3R_17010001 RAL-332 1597 chr3R 17060827 17060857 chr3R 17060907 17060921 17 74 9.0 8.0 8.5 1.8 94 chr3R 17060827 intron Dad + chr3R 17060874 intron Dad + chr3R 17060921 intron Dad + chr3R_17_17060001 chr3R_17060001 RAL-332 1598 chr3R 17067504 17067536 chr3R 17067587 17067618 7 79 3.5 4.0 3.8 1.5 114 chr3R 17067504 intron Dad + chr3R 17067561 intron Dad + chr3R 17067618 intron Dad + chr3R_7_17065001 chr3R_17065001 RAL-332 1599 chr3R 17121530 17121548 chr3R 17121725 17121742 4 193 0.5 2.5 1.5 1.6 212 chr3R 17121530 intron cher - chr3R 17121636 intron,exon cher -,CG42779 + chr3R 17121742 intron,exon cher -,CG42779 + chr3R_4_17120001 chr3R_17120001 RAL-332 1600 chr3R 17132053 17132055 chr3R 17132128 17132135 4 78 14.5 7.5 11.0 0.3 82 chr3R 17132053 exon CG4053 - chr3R 17132094 exon CG4053 - chr3R 17132135 exon CG4053 - chr3R_4_17130001 chr3R_17130001 RAL-332 1601 chr3R 17132056 17132081 chr3R 17132127 17132161 12 74 6.0 6.5 6.2 1.7 105 chr3R 17132056 exon CG4053 - chr3R 17132108 exon CG4053 - chr3R 17132161 5` UTR CG4053 - chr3R_12_17130001 chr3R_17130001 RAL-332 1602 chr3R 17335158 17335187 chr3R 17335234 17335248 11 73 6.0 6.0 6.0 1.6 90 chr3R 17335158 intron beat-IIa - chr3R 17335203 intron beat-IIa - chr3R 17335248 intron beat-IIa - chr3R_11_17335001 chr3R_17335001 RAL-332 1603 chr3R 17346702 17346721 chr3R 17348249 17348265 F-element 5 1553 0.5 7.0 3.8 1.0 1563 chr3R 17346702 intron beat-IIa - chr3R 17347484 intron beat-IIa - chr3R 17348265 intron beat-IIa - chr3R_5_17345001 chr3R_17345001 RAL-332 1604 chr3R 17355494 17355521 chr3R 17355572 17355599 6 75 3.0 4.5 3.8 1.2 105 chr3R 17355494 intron beat-IIa - chr3R 17355546 intron beat-IIa - chr3R 17355599 intron beat-IIa - chr3R_6_17355001 chr3R_17355001 RAL-332 1605 chr3R 17358781 17358796 chr3R 17358893 17358899 11 119 4.5 10.0 7.2 1.3 118 chr3R 17358781 intron beat-IIa - chr3R 17358840 intron beat-IIa - chr3R 17358899 intron beat-IIa - chr3R_11_17355001 chr3R_17355001 RAL-332 1606 chr3R 17461200 17461230 chr3R 17461279 17461311 15 76 0.0 5.0 2.5 4.3 111 chr3R 17461200 intergenic not near genes chr3R 17461256 intergenic not near genes chr3R 17461311 intergenic not near genes chr3R_15_17460001 chr3R_17460001 RAL-332 1607 chr3R 17492188 17492223 chr3R 17492282 17492306 10 87 8.5 4.0 6.2 1.4 118 chr3R 17492188 intron Dscam3 - chr3R 17492247 intron Dscam3 - chr3R 17492306 intron Dscam3 - chr3R_10_17490001 chr3R_17490001 RAL-332 1608 chr3R 17521582 17521584 chr3R 17521718 17521744 6 148 3.5 9.0 6.2 0.8 162 chr3R 17521582 intergenic not near genes chr3R 17521663 intergenic not near genes chr3R 17521744 intergenic not near genes chr3R_6_17520001 chr3R_17520001 RAL-332 1609 chr3R 17587209 17587245 chr3R 17587392 17587428 13 178 9.0 8.5 8.8 1.3 219 chr3R 17587209 intergenic not near genes chr3R 17587318 intergenic not near genes chr3R 17587428 intergenic not near genes chr3R_13_17585001 chr3R_17585001 RAL-332 1610 chr3R 17591284 17591316 chr3R 17591720 17591732 F-element 7 433 7.5 2.5 5.0 1.2 448 chr3R 17591284 intergenic not near genes chr3R 17591508 intergenic not near genes chr3R 17591732 intergenic not near genes chr3R_7_17590001 chr3R_17590001 RAL-332 1611 chr3R 17702561 17702586 chr3R 17702676 17702685 5 110 1.0 2.5 1.8 1.8 124 chr3R 17702561 intron osa - chr3R 17702623 intron osa - chr3R 17702685 intron osa - chr3R_5_17700001 chr3R_17700001 RAL-332 1612 chr3R 17811196 17811225 chr3R 17811276 17811305 5 74 3.0 0.5 1.8 1.8 109 chr3R 17811196 intergenic CG18012 -,tinc + chr3R 17811250 intergenic CG18012 -,tinc + chr3R 17811305 intergenic CG18012 -,tinc + chr3R_5_17810001 chr3R_17810001 RAL-332 1613 chr3R 17845213 17845218 chr3R 17845263 17845266 8 64 10.5 13.5 12.0 0.6 53 chr3R 17845213 intron tinc + chr3R 17845240 intron tinc + chr3R 17845266 intron tinc + chr3R_8_17845001 chr3R_17845001 RAL-332 1614 chr3R 17886888 17886916 chr3R 17886965 17886985 7 74 2.5 3.0 2.8 1.8 97 chr3R 17886888 intron Rim - chr3R 17886936 intron Rim - chr3R 17886985 intron Rim - chr3R_7_17885001 chr3R_17885001 RAL-332 1615 chr3R 17899091 17899125 chr3R 17899169 17899182 4 65 0.0 0.5 0.2 3.3 91 chr3R 17899091 intron Rim - chr3R 17899136 intron Rim - chr3R 17899182 intron Rim - chr3R_4_17895001 chr3R_17895001 RAL-332 1616 chr3R 17925865 17925887 chr3R 17927322 17927352 hobo 11 1460 6.5 8.5 7.5 1.3 1487 chr3R 17925865 intron cpo + chr3R 17926608 intron cpo + chr3R 17927352 intron cpo + chr3R_11_17925001 chr3R_17925001 RAL-332 1617 chr3R 18032787 18032807 chr3R 18040455 18040468 opus 6 7666 0.0 1.5 0.8 3.3 7681 chr3R 18032787 intergenic not near genes chr3R 18036628 intergenic not near genes chr3R 18040468 intergenic not near genes chr3R_6_18035001 chr3R_18035001 RAL-332 1618 chr3R 18136235 18136257 chr3R 18136349 18136363 5 111 0.5 2.0 1.2 2.3 128 chr3R 18136235 intergenic not near genes chr3R 18136299 intergenic not near genes chr3R 18136363 intergenic not near genes chr3R_5_18135001 chr3R_18135001 RAL-332 1619 chr3R 18215736 18215741 chr3R 18295908 18295911 4 80164 11.0 26.5 18.8 0.2 80175 chr3R 18215736 intergenic CG14314 + chr3R 18255824 intron,intron Tgs1 +,moi + chr3R 18295911 intron l(3)05822 - chr3R_4_18255001 chr3R_18255001 RAL-332 1620 chr3R 18320756 18320762 chr3R 18320875 18320897 6 131 3.5 10.0 6.8 0.8 141 chr3R 18320756 intron CG31235 - chr3R 18320826 intron CG31235 - chr3R 18320897 intron CG31235 - chr3R_6_18320001 chr3R_18320001 RAL-332 1621 chr3R 18374514 18374537 chr3R 18374602 18374627 7 86 6.0 6.0 6.0 1.0 113 chr3R 18374514 intergenic CR44946 + chr3R 18374570 5` UTR CR44946 + chr3R 18374627 5` UTR CR44946 + chr3R_7_18370001 chr3R_18370001 RAL-332 1622 chr3R 18528387 18528395 chr3R 18528452 18528482 5 79 4.5 2.0 3.2 1.2 95 chr3R 18528387 intron fru - chr3R 18528434 intron fru - chr3R 18528482 intron fru - chr3R_5_18525001 chr3R_18525001 RAL-332 1623 chr3R 18606502 18606531 chr3R 18610734 18610763 F-element 10 4229 3.5 4.0 3.8 2.1 4261 chr3R 18606502 intron,intron qin +,CG14304 - chr3R 18608632 intron,intron qin +,CG14304 - chr3R 18610763 intron,intron qin +,CG14304 - chr3R_10_18605001 chr3R_18605001 RAL-332 1624 chr3R 18730026 18730038 chr3R 18730101 18730113 4 76 5.0 4.0 4.5 0.7 87 chr3R 18730026 intron Cha + chr3R 18730070 intron Cha + chr3R 18730113 exon Cha + chr3R_4_18730001 chr3R_18730001 RAL-332 1625 chr3R 18766783 18766810 chr3R 18766853 18766884 15 72 4.5 4.5 4.5 2.7 101 chr3R 18766783 intron CG7720 - chr3R 18766834 intron CG7720 - chr3R 18766884 intron CG7720 - chr3R_15_18765001 chr3R_18765001 RAL-332 1626 chr3R 18792805 18792836 chr3R 18792888 18792903 4 70 1.5 0.0 0.8 2.2 98 chr3R 18792805 intron CG7720 - chr3R 18792854 intron CG7720 - chr3R 18792903 intron CG7720 - chr3R_4_18790001 chr3R_18790001 RAL-332 1627 chr3R 18812075 18812108 chr3R 18812153 18812183 16 77 8.0 8.0 8.0 1.8 108 chr3R 18812075 intron CG18208 - chr3R 18812129 intron CG18208 - chr3R 18812183 intron CG18208 - chr3R_16_18810001 chr3R_18810001 RAL-332 1628 chr3R 18817506 18817541 chr3R 18817604 18817639 9 94 1.5 0.0 0.8 5.0 133 chr3R 18817506 intron CG18208 - chr3R 18817572 intron CG18208 - chr3R 18817639 intron CG18208 - chr3R_9_18815001 chr3R_18815001 RAL-332 1629 chr3R 18839812 18839838 chr3R 18839896 18839922 17 82 3.0 6.5 4.8 2.9 110 chr3R 18839812 intron CG18208 - chr3R 18839867 intron CG18208 - chr3R 18839922 intron CG18208 - chr3R_17_18835001 chr3R_18835001 RAL-332 1630 chr3R 18967130 18967162 chr3R 18967322 18967356 16 194 42.5 41.0 41.8 0.4 226 chr3R 18967130 intron,intron CG42613 +,CG43732 + chr3R 18967243 intron,intron CG42613 +,CG43732 + chr3R 18967356 intron,intron CG42613 +,CG43732 + chr3R_16_18965001 chr3R_18965001 RAL-332 1631 chr3R 19010019 19010041 chr3R 19010107 19010129 9 87 10.5 13.5 12.0 0.7 110 chr3R 19010019 intron gukh + chr3R 19010074 intron gukh + chr3R 19010129 intron gukh + chr3R_9_19010001 chr3R_19010001 RAL-332 1632 chr3R 19013030 19013048 chr3R 19013105 19013132 8 81 6.0 4.0 5.0 1.3 102 chr3R 19013030 intron gukh + chr3R 19013081 intron gukh + chr3R 19013132 intron gukh + chr3R_8_19010001 chr3R_19010001 RAL-332 1633 chr3R 19014102 19014121 chr3R 19014173 19014184 5 67 17.5 19.5 18.5 0.3 82 chr3R 19014102 intron gukh + chr3R 19014143 intron gukh + chr3R 19014184 intron gukh + chr3R_5_19010001 chr3R_19010001 RAL-332 1634 chr3R 19033927 19033957 chr3R 19034005 19034031 13 75 10.5 13.5 12.0 1.0 104 chr3R 19033927 intron CG6026 + chr3R 19033979 intron CG6026 + chr3R 19034031 intron CG6026 + chr3R_13_19030001 chr3R_19030001 RAL-332 1635 chr3R 19193002 19193009 chr3R 19197286 19197308 F-element 5 4296 1.0 3.5 2.2 1.6 4306 chr3R 19193002 intron CG31475 + chr3R 19195155 intron CG31475 + chr3R 19197308 intron CG31475 + chr3R_5_19195001 chr3R_19195001 RAL-332 1636 chr3R 19206779 19206795 chr3R 19206957 19206964 4 181 11.0 10.0 10.5 0.3 185 chr3R 19206779 intergenic not near genes chr3R 19206872 intergenic not near genes chr3R 19206964 intergenic not near genes chr3R_4_19205001 chr3R_19205001 RAL-332 1637 chr3R 19229384 19229403 chr3R 19229453 19229479 7 75 8.5 12.0 10.2 0.6 95 chr3R 19229384 intergenic CG3773 +,CG5250 - chr3R 19229432 intergenic CG3773 +,CG5250 - chr3R 19229479 5` UTR CG3773 + chr3R_7_19225001 chr3R_19225001 RAL-332 1638 chr3R 19290550 19290579 chr3R 19290626 19290653 7 76 9.0 9.0 9.0 0.7 103 chr3R 19290550 intergenic not near genes chr3R 19290602 intergenic not near genes chr3R 19290653 intergenic not near genes chr3R_7_19290001 chr3R_19290001 RAL-332 1639 chr3R 19340400 19340428 chr3R 19340477 19340499 6 74 8.0 5.0 6.5 0.8 99 chr3R 19340400 intergenic not near genes chr3R 19340450 intergenic not near genes chr3R 19340499 intergenic not near genes chr3R_6_19340001 chr3R_19340001 RAL-332 1640 chr3R 19505933 19505968 chr3R 19506032 19506067 9 95 18.0 14.0 16.0 0.5 134 chr3R 19505933 exon Dys + chr3R 19506000 intron Dys + chr3R 19506067 intron Dys + chr3R_9_19505001 chr3R_19505001 RAL-332 1641 chr3R 19561839 19561854 chr3R 19561915 19561929 4 75 19.5 20.0 19.8 0.2 90 chr3R 19561839 intron Dys + chr3R 19561884 intron Dys + chr3R 19561929 intron Dys + chr3R_4_19560001 chr3R_19560001 RAL-332 1642 chr3R 19702337 19702349 chr3R 19702402 19702421 4 75 19.0 13.5 16.2 0.2 84 chr3R 19702337 intergenic not near genes chr3R 19702379 intergenic not near genes chr3R 19702421 intergenic not near genes chr3R_4_19700001 chr3R_19700001 RAL-332 1643 chr3R 19750052 19750067 chr3R 19750126 19750147 4 77 9.0 8.0 8.5 0.4 95 chr3R 19750052 intron GluClalpha + chr3R 19750100 intron GluClalpha + chr3R 19750147 intron GluClalpha + chr3R_4_19750001 chr3R_19750001 RAL-332 1644 chr3R 19755434 19755451 chr3R 19755527 19755545 6 94 10.0 11.0 10.5 0.5 111 chr3R 19755434 intron GluClalpha + chr3R 19755490 intron GluClalpha + chr3R 19755545 intron GluClalpha + chr3R_6_19755001 chr3R_19755001 RAL-332 1645 chr3R 19793901 19793926 chr3R 19793994 19794004 5 86 26.5 21.5 24.0 0.2 103 chr3R 19793901 intergenic bnl - chr3R 19793952 intergenic bnl - chr3R 19794004 intergenic bnl - chr3R_5_19790001 chr3R_19790001 RAL-332 1646 chr3R 19809206 19809238 chr3R 19810756 19810771 7 1539 20.5 51.5 36.0 0.2 1565 chr3R 19809206 intron bnl - chr3R 19809988 intron bnl - chr3R 19810771 intron bnl - chr3R_7_19805001 chr3R_19805001 RAL-332 1647 chr3R 19989855 19989880 chr3R 19989932 19989952 6 77 15.0 10.5 12.8 0.4 97 chr3R 19989855 intron Hs6st - chr3R 19989904 intron Hs6st - chr3R 19989952 intron Hs6st - chr3R_6_19985001 chr3R_19985001 RAL-332 1648 chr3R 20008824 20008855 chr3R 20008905 20008929 5 74 3.0 3.5 3.2 1.2 105 chr3R 20008824 intergenic MED25 +,Hs6st - chr3R 20008876 intergenic MED25 +,Hs6st - chr3R 20008929 intergenic MED25 +,Hs6st - chr3R_5_20005001 chr3R_20005001 RAL-332 1649 chr3R 20020149 20020181 chr3R 20020290 20020297 5 132 5.5 7.0 6.2 0.7 148 chr3R 20020149 intron CG4433 - chr3R 20020223 intron CG4433 - chr3R 20020297 intron CG4433 - chr3R_5_20020001 chr3R_20020001 RAL-332 1650 chr3R 20041126 20041146 chr3R 20041221 20041239 7 97 8.0 4.0 6.0 1.0 113 chr3R 20041126 intron CG17193 - chr3R 20041182 intron CG17193 - chr3R 20041239 intron CG17193 - chr3R_7_20040001 chr3R_20040001 RAL-332 1651 chr3R 20059466 20059500 chr3R 20059545 20059580 5 73 12.5 16.5 14.5 0.3 114 chr3R 20059466 intron CG4390 - chr3R 20059523 intron CG4390 - chr3R 20059580 exon CG4390 - chr3R_5_20055001 chr3R_20055001 RAL-332 1652 chr3R 20106664 20106684 chr3R 20106750 20106771 4 87 12.0 13.5 12.8 0.3 107 chr3R 20106664 intergenic CG31206 - chr3R 20106718 intergenic CG31206 - chr3R 20106771 intergenic CG31206 - chr3R_4_20105001 chr3R_20105001 RAL-332 1653 chr3R 20109550 20109570 chr3R 20114756 20114776 copia 5 5206 0.5 2.0 1.2 2.3 5226 chr3R 20109550 intergenic not near genes chr3R 20112163 intergenic not near genes chr3R 20114776 intergenic CG10887 + chr3R_5_20110001 chr3R_20110001 RAL-332 1654 chr3R 20137191 20137226 chr3R 20137318 20137353 7 123 17.5 10.5 14.0 0.5 162 chr3R 20137191 intergenic not near genes chr3R 20137272 intergenic not near genes chr3R 20137353 intergenic not near genes chr3R_7_20135001 chr3R_20135001 RAL-332 1655 chr3R 20156696 20156723 chr3R 20165866 20165893 roo 13 9165 3.5 6.5 5.0 2.2 9197 chr3R 20156696 intergenic not near genes chr3R 20161294 intergenic not near genes chr3R 20165893 intergenic not near genes chr3R_13_20160001 chr3R_20160001 RAL-332 1656 chr3R 20167260 20167284 chr3R 20167354 20167386 12 96 10.5 8.0 9.2 1.2 126 chr3R 20167260 intergenic not near genes chr3R 20167323 intergenic not near genes chr3R 20167386 intergenic not near genes chr3R_12_20165001 chr3R_20165001 RAL-332 1657 chr3R 20167794 20167822 chr3R 20167872 20167900 10 76 4.5 12.0 8.2 1.1 106 chr3R 20167794 intergenic not near genes chr3R 20167847 intergenic not near genes chr3R 20167900 intergenic not near genes chr3R_10_20165001 chr3R_20165001 RAL-332 1658 chr3R 20195689 20195723 chr3R 20195766 20195798 6 72 1.0 4.0 2.5 1.7 109 chr3R 20195689 intergenic not near genes chr3R 20195744 intergenic not near genes chr3R 20195798 intergenic not near genes chr3R_6_20195001 chr3R_20195001 RAL-332 1659 chr3R 20209801 20209823 chr3R 20209887 20209908 4 79 5.5 3.5 4.5 0.7 107 chr3R 20209801 intron Nlg4 + chr3R 20209854 intron Nlg4 + chr3R 20209908 intron Nlg4 + chr3R_4_20205001 chr3R_20205001 RAL-332 1660 chr3R 20222552 20222580 chr3R 20222763 20222796 7 215 7.0 10.0 8.5 0.7 244 chr3R 20222552 intron Nlg4 + chr3R 20222674 intron Nlg4 + chr3R 20222796 intron Nlg4 + chr3R_7_20220001 chr3R_20220001 RAL-332 1661 chr3R 20245280 20245306 chr3R 20248890 20248916 F-element 4 3604 0.5 1.0 0.8 2.2 3636 chr3R 20245280 3` UTR Nlg4 + chr3R 20247098 intergenic not near genes chr3R 20248916 intergenic not near genes chr3R_4_20245001 chr3R_20245001 RAL-332 1662 chr3R 20266519 20266526 chr3R 20272990 20272993 Burdock 4 6470 7.0 3.0 5.0 0.7 6474 chr3R 20266519 intron cic + chr3R 20269756 intron cic + chr3R 20272993 intron cic + chr3R_4_20265001 chr3R_20265001 RAL-332 1663 chr3R 20266528 20266544 chr3R 20272985 20273002 Burdock 7 6462 3.5 2.5 3.0 1.8 6474 chr3R 20266528 intron cic + chr3R 20269765 intron cic + chr3R 20273002 intron cic + chr3R_7_20265001 chr3R_20265001 RAL-332 1664 chr3R 20282295 20282309 chr3R 20282352 20282385 10 73 0.5 5.0 2.8 2.6 90 chr3R 20282295 intron cic + chr3R 20282340 intron cic + chr3R 20282385 intron cic + chr3R_10_20280001 chr3R_20280001 RAL-332 1665 chr3R 20411222 20411241 chr3R 20411437 20411456 9 213 4.0 4.0 4.0 1.8 234 chr3R 20411222 intron Gfrl - chr3R 20411339 intron Gfrl - chr3R 20411456 intron Gfrl - chr3R_9_20410001 chr3R_20410001 RAL-332 1666 chr3R 20482443 20482453 chr3R 20482516 20482540 4 78 4.0 10.0 7.0 0.5 97 chr3R 20482443 intron Gfrl - chr3R 20482492 intron Gfrl - chr3R 20482540 intron Gfrl - chr3R_4_20480001 chr3R_20480001 RAL-332 1667 chr3R 20516545 20516552 chr3R 20516901 20516908 5 356 7.5 3.0 5.2 0.8 363 chr3R 20516545 intergenic not near genes chr3R 20516726 intergenic not near genes chr3R 20516908 intergenic not near genes chr3R_5_20515001 chr3R_20515001 RAL-332 1668 chr3R 20516557 20516569 chr3R 20516897 20516910 7 344 3.0 3.0 3.0 1.8 353 chr3R 20516557 intergenic not near genes chr3R 20516734 intergenic not near genes chr3R 20516910 intergenic not near genes chr3R_7_20515001 chr3R_20515001 RAL-332 1669 chr3R 20594497 20594513 chr3R 20594573 20594587 4 82 5.5 3.0 4.2 0.8 90 chr3R 20594497 intron bon + chr3R 20594542 intron bon + chr3R 20594587 intron bon + chr3R_4_20590001 chr3R_20590001 RAL-332 1670 chr3R 20595602 20595624 chr3R 20595812 20595834 6 210 12.0 5.0 8.5 0.6 232 chr3R 20595602 intron bon + chr3R 20595718 intron bon + chr3R 20595834 intron bon + chr3R_6_20595001 chr3R_20595001 RAL-332 1671 chr3R 20686969 20686991 chr3R 20687404 20687426 11 431 5.0 3.0 4.0 2.2 457 chr3R 20686969 intergenic not near genes chr3R 20687198 intergenic not near genes chr3R 20687426 intergenic not near genes chr3R_11_20685001 chr3R_20685001 RAL-332 1672 chr3R 20722855 20722867 chr3R 20722981 20722993 4 126 8.0 4.5 6.2 0.6 138 chr3R 20722855 intergenic not near genes chr3R 20722924 intergenic not near genes chr3R 20722993 intergenic not near genes chr3R_4_20720001 chr3R_20720001 RAL-332 1673 chr3R 20722868 20722887 chr3R 20722980 20723004 8 119 3.0 4.0 3.5 1.8 136 chr3R 20722868 intergenic not near genes chr3R 20722936 intergenic not near genes chr3R 20723004 intergenic not near genes chr3R_8_20720001 chr3R_20720001 RAL-332 1674 chr3R 20767518 20767534 chr3R 20767596 20767628 4 81 11.0 12.5 11.8 0.3 110 chr3R 20767518 intron Syp + chr3R 20767573 intron Syp + chr3R 20767628 intron Syp + chr3R_4_20765001 chr3R_20765001 RAL-332 1675 chr3R 20769580 20769600 chr3R 20769706 20769722 9 125 7.0 2.5 4.8 1.6 142 chr3R 20769580 intron Syp + chr3R 20769651 intron Syp + chr3R 20769722 intron Syp + chr3R_9_20765001 chr3R_20765001 RAL-332 1676 chr3R 20787438 20787453 chr3R 20787529 20787544 4 90 6.0 4.0 5.0 0.7 106 chr3R 20787438 intron Syp + chr3R 20787491 intron Syp + chr3R 20787544 intron Syp + chr3R_4_20785001 chr3R_20785001 RAL-332 1677 chr3R 20854501 20854515 chr3R 20859279 20859305 Doc 4 4784 6.5 6.0 6.2 0.6 4804 chr3R 20854501 intron Ir93a - chr3R 20856903 intron Ir93a - chr3R 20859305 exon Ir93a - chr3R_4_20855001 chr3R_20855001 RAL-332 1678 chr3R 21074807 21074831 chr3R 21075028 21075034 6 214 1.5 3.0 2.2 1.9 227 chr3R 21074807 intron dmrt93B + chr3R 21074920 intron dmrt93B + chr3R 21075034 intron dmrt93B + chr3R_6_21070001 chr3R_21070001 RAL-332 1679 chr3R 21141698 21141701 chr3R 21150154 21150183 Tirant 4 8466 7.0 4.5 5.8 0.6 8485 chr3R 21141698 intron SNF4Agamma + chr3R 21145940 intron SNF4Agamma + chr3R 21150183 intron SNF4Agamma + chr3R_4_21145001 chr3R_21145001 RAL-332 1680 chr3R 21385697 21385957 chr3R 21385777 21386034 12 75 3.0 0.0 1.5 4.8 337 chr3R 21385697 intergenic not near genes chr3R 21385866 intergenic not near genes chr3R 21386034 intergenic not near genes chr3R_12_21385001 chr3R_21385001 RAL-332 1681 chr3R 21464403 21464426 chr3R 21464489 21464504 6 84 0.5 0.0 0.2 5.0 101 chr3R 21464403 intergenic not near genes chr3R 21464454 intergenic not near genes chr3R 21464504 intergenic not near genes chr3R_6_21460001 chr3R_21460001 RAL-332 1682 chr3R 21484325 21484355 chr3R 21484642 21484671 6 312 28.5 43.0 35.8 0.2 346 chr3R 21484325 exon CG7922 + chr3R 21484498 exon CG7922 + chr3R 21484671 exon CG7922 + chr3R_6_21480001 chr3R_21480001 RAL-332 1683 chr3R 21624105 21624121 chr3R 21624197 21624215 13 91 6.0 6.5 6.2 1.8 110 chr3R 21624105 intron E2f - chr3R 21624160 intron E2f - chr3R 21624215 intron E2f - chr3R_13_21620001 chr3R_21620001 RAL-332 1684 chr3R 21761121 21761134 chr3R 21768513 21768526 mdg1 7 7392 13.0 10.5 11.8 0.5 7405 chr3R 21761121 exon CG42335 + chr3R 21764824 intron CG42335 + chr3R 21768526 exon CG42335 + chr3R_7_21760001 chr3R_21760001 RAL-332 1685 chr3R 21761136 21761154 chr3R 21768510 21768546 mdg1 7 7382 7.0 9.5 8.2 0.8 7410 chr3R 21761136 exon CG42335 + chr3R 21764841 intron CG42335 + chr3R 21768546 exon CG42335 + chr3R_7_21760001 chr3R_21760001 RAL-332 1686 chr3R 21784861 21784882 chr3R 21784957 21784977 4 97 10.5 4.0 7.2 0.5 116 chr3R 21784861 3` UTR,3` UTR CASK -,CRG - chr3R 21784919 3` UTR,3` UTR CASK -,CRG - chr3R 21784977 3` UTR,3` UTR CASK -,CRG - chr3R_4_21780001 chr3R_21780001 RAL-332 1687 chr3R 8339246 8339247 chr3R 21907534 21907534 13 13568288 25.0 28.0 26.5 0.5 13568288 chr3R 8339246 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907534 intergenic CG6678 + chr3R_13_15120001 chr3R_15120001 RAL-332 1688 chr3R 15286987 15286988 chr3R 21907534 21907534 5 6620546 22.0 28.0 25.0 0.2 6620547 chr3R 15286987 intron Tm1 + chr3R 18597260 intron,exon qin +,CG14304 - chr3R 21907534 intergenic CG6678 + chr3R_5_18595001 chr3R_18595001 RAL-332 1689 chr3R 17389054 17389054 chr3R 21907534 21907534 9 4518480 13.5 28.0 20.8 0.4 4518480 chr3R 17389054 intron,3` UTR Brf -,lute + chr3R 19648294 5` UTR CG6195 - chr3R 21907534 intergenic CG6678 + chr3R_9_19645001 chr3R_19645001 RAL-332 1690 chr3R 21907534 21907534 chr3R 26659333 26659335 4 4751800 29.0 27.0 28.0 0.1 4751801 chr3R 21907534 intergenic CG6678 + chr3R 24283434 intergenic CR45662 - chr3R 26659335 intron beat-VII - chr3R_4_24280001 chr3R_24280001 RAL-332 1691 chr3R 21907534 21907534 chr3R 28831801 28831802 19 6924268 29.0 33.5 31.2 0.6 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_19_25365001 chr3R_25365001 RAL-332 1692 chr3R 8339246 8339247 chr3R 21907535 21907535 15 13568288 25.0 28.0 26.5 0.5 13568289 chr3R 8339246 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907535 intergenic CG6678 + chr3R_15_15120001 chr3R_15120001 RAL-332 1693 chr3R 21907535 21907535 chr3R 28831799 28831802 37 6924266 29.0 34.5 31.8 1.1 6924267 chr3R 21907535 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_37_25365001 chr3R_25365001 RAL-332 1694 chr3R 8339246 8339247 chr3R 21907536 21907536 5 13568289 25.0 28.0 26.5 0.2 13568290 chr3R 8339246 intergenic not near genes chr3R 15123391 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_5_15120001 chr3R_15120001 RAL-332 1695 chr3R 21907536 21907536 chr3R 28831799 28831802 28 6924266 28.0 34.5 31.2 0.9 6924266 chr3R 21907536 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831802 intron WASp - chr3R_28_25365001 chr3R_25365001 RAL-332 1696 chr3R 21907536 21907536 chr3R 29013339 29013340 7 7105804 28.0 21.0 24.5 0.3 7105804 chr3R 21907536 intergenic CG6678 + chr3R 25460438 intron Fur1 - chr3R 29013340 intron wat - chr3R_7_25460001 chr3R_25460001 RAL-332 1697 chr3R 22055564 22055585 chr3R 22055752 22055774 6 185 4.5 6.5 5.5 0.9 210 chr3R 22055564 intron how + chr3R 22055669 intron how + chr3R 22055774 intron how + chr3R_6_22055001 chr3R_22055001 RAL-332 1698 chr3R 22218448 22218457 chr3R 22218663 22218679 8 225 6.5 15.0 10.8 0.7 231 chr3R 22218448 intron SKIP + chr3R 22218564 intron SKIP + chr3R 22218679 intron SKIP + chr3R_8_22215001 chr3R_22215001 RAL-332 1699 chr3R 22225526 22225554 chr3R 22225613 22225635 7 85 4.5 6.5 5.5 1.1 109 chr3R 22225526 intron SKIP + chr3R 22225580 intron SKIP + chr3R 22225635 intron SKIP + chr3R_7_22225001 chr3R_22225001 RAL-332 1700 chr3R 22292474 22292501 chr3R 22292554 22292581 4 79 10.0 17.5 13.8 0.3 107 chr3R 22292474 intron SKIP + chr3R 22292528 intron SKIP + chr3R 22292581 intron SKIP + chr3R_4_22290001 chr3R_22290001 RAL-332 1701 chr3R 22324409 22324429 chr3R 22324473 22324501 6 72 4.0 6.5 5.2 1.0 92 chr3R 22324409 intergenic CG34377 - chr3R 22324455 intergenic CG34377 - chr3R 22324501 intergenic CG34377 - chr3R_6_22320001 chr3R_22320001 RAL-332 1702 chr3R 22428579 22428609 chr3R 22428652 22428685 20 73 5.5 4.5 5.0 3.3 106 chr3R 22428579 intron CG13847 - chr3R 22428632 intron CG13847 - chr3R 22428685 intron CG13847 - chr3R_20_22425001 chr3R_22425001 RAL-332 1703 chr3R 22433100 22433114 chr3R 22433192 22433192 4 92 10.0 17.0 13.5 0.3 92 chr3R 22433100 intron CG13847 - chr3R 22433146 intron CG13847 - chr3R 22433192 intron CG13847 - chr3R_4_22430001 chr3R_22430001 RAL-332 1704 chr3R 22450543 22450579 chr3R 22453182 22453214 NOF 20 2636 3.5 10.5 7.0 2.5 2671 chr3R 22450543 intron CG34376 + chr3R 22451878 intron CG34376 + chr3R 22453214 intron CG34376 + chr3R_20_22450001 chr3R_22450001 RAL-332 1705 chr3R 22589659 22589683 chr3R 22589979 22590003 7 323 4.0 9.0 6.5 0.9 344 chr3R 22589659 intron Efa6 + chr3R 22589831 intron Efa6 + chr3R 22590003 intron Efa6 + chr3R_7_22585001 chr3R_22585001 RAL-332 1706 chr3R 22597389 22597408 chr3R 22597451 22597465 6 66 12.0 9.5 10.8 0.5 76 chr3R 22597389 intron Efa6 + chr3R 22597427 intron Efa6 + chr3R 22597465 intron Efa6 + chr3R_6_22595001 chr3R_22595001 RAL-332 1707 chr3R 22632872 22632909 chr3R 22632962 22632999 20 85 5.0 5.5 5.2 3.2 127 chr3R 22632872 intron loco - chr3R 22632936 intron loco - chr3R 22632999 intron loco - chr3R_20_22630001 chr3R_22630001 RAL-332 1708 chr3R 22794534 22794552 chr3R 22794596 22794623 8 71 3.5 7.0 5.2 1.3 89 chr3R 22794534 intergenic not near genes chr3R 22794578 intergenic not near genes chr3R 22794623 intergenic not near genes chr3R_8_22790001 chr3R_22790001 RAL-332 1709 chr3R 22810986 22811005 chr3R 22811185 22811211 4 206 18.5 23.0 20.8 0.2 225 chr3R 22810986 intergenic not near genes chr3R 22811098 intergenic not near genes chr3R 22811211 intergenic not near genes chr3R_4_22810001 chr3R_22810001 RAL-332 1710 chr3R 22843374 22843393 chr3R 22843440 22843457 10 74 10.0 8.5 9.2 1.0 83 chr3R 22843374 intergenic not near genes chr3R 22843416 intergenic not near genes chr3R 22843457 intergenic not near genes chr3R_10_22840001 chr3R_22840001 RAL-332 1711 chr3R 22860154 22860176 chr3R 22860246 22860268 11 90 5.0 3.0 4.0 2.2 114 chr3R 22860154 intergenic not near genes chr3R 22860211 intergenic not near genes chr3R 22860268 intergenic not near genes chr3R_11_22860001 chr3R_22860001 RAL-332 1712 chr3R 22873296 22873299 chr3R 22873364 22873365 4 76 5.0 10.5 7.8 0.5 69 chr3R 22873296 intergenic not near genes chr3R 22873330 intergenic not near genes chr3R 22873365 intergenic not near genes chr3R_4_22870001 chr3R_22870001 RAL-332 1713 chr3R 22906636 22906661 chr3R 22906714 22906725 6 74 10.0 9.0 9.5 0.6 89 chr3R 22906636 intron klg + chr3R 22906680 intron klg + chr3R 22906725 intron klg + chr3R_6_22905001 chr3R_22905001 RAL-332 1714 chr3R 22919165 22919190 chr3R 22919260 22919270 13 93 6.0 7.5 6.8 1.7 105 chr3R 22919165 intron klg + chr3R 22919218 intron klg + chr3R 22919270 intron klg + chr3R_13_22915001 chr3R_22915001 RAL-332 1715 chr3R 22974301 22974311 chr3R 22974368 22974394 5 75 2.5 3.5 3.0 1.2 93 chr3R 22974301 intergenic not near genes chr3R 22974348 intergenic not near genes chr3R 22974394 intergenic not near genes chr3R_5_22970001 chr3R_22970001 RAL-332 1716 chr3R 23016202 23016229 chr3R 23016279 23016306 7 72 19.5 21.0 20.2 0.3 104 chr3R 23016202 intergenic not near genes chr3R 23016254 intergenic not near genes chr3R 23016306 intergenic not near genes chr3R_7_23015001 chr3R_23015001 RAL-332 1717 chr3R 23064180 23064204 chr3R 23064281 23064301 11 104 10.5 16.0 13.2 0.8 121 chr3R 23064180 exon CG17111 - chr3R 23064240 intron CG17111 - chr3R 23064301 exon CG17111 - chr3R_11_23060001 chr3R_23060001 RAL-332 1718 chr3R 23073665 23073686 chr3R 23073744 23073775 9 79 11.5 11.5 11.5 0.7 110 chr3R 23073665 intron CG13830 - chr3R 23073720 intron CG13830 - chr3R 23073775 intron CG13830 - chr3R_9_23070001 chr3R_23070001 RAL-332 1719 chr3R 23101383 23101406 chr3R 23101475 23101488 18 88 14.5 11.0 12.8 1.3 105 chr3R 23101383 intron CG13830 - chr3R 23101436 intron CG13830 - chr3R 23101488 intron CG13830 - chr3R_18_23100001 chr3R_23100001 RAL-332 1720 chr3R 23245991 23246022 chr3R 23246071 23246092 11 77 3.5 5.0 4.2 2.1 101 chr3R 23245991 intron CG4467 - chr3R 23246042 intron CG4467 - chr3R 23246092 intron CG4467 - chr3R_11_23245001 chr3R_23245001 RAL-332 1721 chr3R 23305248 23305265 chr3R 23305595 23305596 7 344 7.5 6.5 7.0 0.9 348 chr3R 23305248 intron pnt - chr3R 23305422 intron pnt - chr3R 23305596 intron pnt - chr3R_7_23305001 chr3R_23305001 RAL-332 1722 chr3R 23338897 23338909 chr3R 23338973 23338980 5 75 4.0 7.0 5.5 0.8 83 chr3R 23338897 intron pnt - chr3R 23338938 intron pnt - chr3R 23338980 intron pnt - chr3R_5_23335001 chr3R_23335001 RAL-332 1723 chr3R 23338910 23338916 chr3R 23338971 23338972 4 62 3.5 6.5 5.0 0.7 62 chr3R 23338910 intron pnt - chr3R 23338941 intron pnt - chr3R 23338972 intron pnt - chr3R_4_23335001 chr3R_23335001 RAL-332 1724 chr3R 23342638 23342663 chr3R 23342773 23342794 5 134 14.5 12.5 13.5 0.3 156 chr3R 23342638 intron pnt - chr3R 23342716 intron pnt - chr3R 23342794 intron pnt - chr3R_5_23340001 chr3R_23340001 RAL-332 1725 chr3R 23360180 23360208 chr3R 23360256 23360283 4 76 2.0 5.0 3.5 0.9 103 chr3R 23360180 3` UTR RpS3 + chr3R 23360232 intergenic RpS3 + chr3R 23360283 intergenic RpS3 + chr3R_4_23360001 chr3R_23360001 RAL-332 1726 chr3R 23421993 23422008 chr3R 23422059 23422092 8 76 6.0 5.0 5.5 1.2 99 chr3R 23421993 intron CG4374 - chr3R 23422042 intron CG4374 - chr3R 23422092 intron CG4374 - chr3R_8_23420001 chr3R_23420001 RAL-332 1727 chr3R 23446280 23446287 chr3R 23446358 23446364 4 78 14.5 12.5 13.5 0.3 84 chr3R 23446280 intron CG4374 - chr3R 23446322 intron CG4374 - chr3R 23446364 intron CG4374 - chr3R_4_23445001 chr3R_23445001 RAL-332 1728 chr3R 23446288 23446311 chr3R 23446355 23446388 11 74 9.0 12.0 10.5 1.0 100 chr3R 23446288 intron CG4374 - chr3R 23446338 intron CG4374 - chr3R 23446388 intron CG4374 - chr3R_11_23445001 chr3R_23445001 RAL-332 1729 chr3R 23557882 23557895 chr3R 23557958 23557968 10 75 23.5 24.5 24.0 0.4 86 chr3R 23557882 intron beat-IV + chr3R 23557925 intron beat-IV + chr3R 23557968 intron beat-IV + chr3R_10_23555001 chr3R_23555001 RAL-332 1730 chr3R 23558399 23558420 chr3R 23560180 23560201 Bari1 5 1781 2.5 3.0 2.8 1.3 1802 chr3R 23558399 intron beat-IV + chr3R 23559300 intron beat-IV + chr3R 23560201 intron beat-IV + chr3R_5_23555001 chr3R_23555001 RAL-332 1731 chr3R 23564443 23564468 chr3R 23564587 23564597 4 140 1.0 2.5 1.8 1.4 154 chr3R 23564443 intron beat-IV + chr3R 23564520 intron beat-IV + chr3R 23564597 intron beat-IV + chr3R_4_23560001 chr3R_23560001 RAL-332 1732 chr3R 23608580 23608608 chr3R 23608708 23608736 4 126 21.5 21.5 21.5 0.2 156 chr3R 23608580 intron CG31145 - chr3R 23608658 intron CG31145 - chr3R 23608736 exon CG31145 - chr3R_4_23605001 chr3R_23605001 RAL-332 1733 chr3R 23629443 23629475 chr3R 23629519 23629548 20 71 14.5 14.5 14.5 1.3 105 chr3R 23629443 intron CG31145 - chr3R 23629496 intron CG31145 - chr3R 23629548 intron CG31145 - chr3R_20_23625001 chr3R_23625001 RAL-332 1734 chr3R 23684725 23684729 chr3R 23685186 23685204 roo 4 476 3.0 10.5 6.8 0.5 479 chr3R 23684725 intron CG18754 + chr3R 23684964 intron CG18754 + chr3R 23685204 exon CG18754 + chr3R_4_23680001 chr3R_23680001 RAL-332 1735 chr3R 23688473 23688504 chr3R 23688564 23688573 5 86 17.5 23.5 20.5 0.2 100 chr3R 23688473 intergenic SPE + chr3R 23688523 intergenic SPE +,CG10254 - chr3R 23688573 intergenic SPE +,CG10254 - chr3R_5_23685001 chr3R_23685001 RAL-332 1736 chr3R 23733824 23733843 chr3R 23734029 23734050 10 206 12.5 9.5 11.0 0.8 226 chr3R 23733824 5` UTR Hmgcr + chr3R 23733937 intron Hmgcr + chr3R 23734050 intron Hmgcr + chr3R_10_23730001 chr3R_23730001 RAL-332 1737 chr3R 23835404 23835420 chr3R 23844554 23844566 roo 4 9147 2.0 3.0 2.5 1.1 9162 chr3R 23835404 intron CG34355 + chr3R 23839985 intron CG34355 + chr3R 23844566 intron CG34355 + chr3R_4_23835001 chr3R_23835001 RAL-332 1738 chr3R 23850035 23850049 chr3R 23850132 23850147 5 94 4.0 2.0 3.0 1.2 112 chr3R 23850035 3` UTR CG34355 + chr3R 23850091 3` UTR CG34355 + chr3R 23850147 3` UTR CG34355 + chr3R_5_23850001 chr3R_23850001 RAL-332 1739 chr3R 23888092 23888115 chr3R 23888171 23888171 4 74 3.0 1.5 2.2 1.2 79 chr3R 23888092 intron Pli - chr3R 23888132 intron Pli - chr3R 23888171 intron Pli - chr3R_4_23885001 chr3R_23885001 RAL-332 1740 chr3R 23944923 23944935 chr3R 23944998 23945020 11 83 4.5 8.5 6.5 1.5 97 chr3R 23944923 intron CG12268 - chr3R 23944972 intron CG12268 - chr3R 23945020 exon CG12268 - chr3R_11_23940001 chr3R_23940001 RAL-332 1741 chr3R 24011670 24011680 chr3R 24011753 24011757 5 81 2.0 0.0 1.0 2.5 87 chr3R 24011670 intron KrT95D - chr3R 24011714 intron KrT95D - chr3R 24011757 intron KrT95D - chr3R_5_24010001 chr3R_24010001 RAL-332 1742 chr3R 24015058 24015096 chr3R 24015134 24015153 10 66 5.5 3.5 4.5 1.8 95 chr3R 24015058 intron KrT95D - chr3R 24015106 intron KrT95D - chr3R 24015153 intron KrT95D - chr3R_10_24015001 chr3R_24015001 RAL-332 1743 chr3R 24019071 24019084 chr3R 24019179 24019191 7 115 8.5 9.0 8.8 0.7 120 chr3R 24019071 intron KrT95D - chr3R 24019131 intron KrT95D - chr3R 24019191 intron KrT95D - chr3R_7_24015001 chr3R_24015001 RAL-332 1744 chr3R 24072084 24072114 chr3R 24072522 24072539 jockey 25 434 10.0 12.0 11.0 2.1 455 chr3R 24072084 intron 4EHP - chr3R 24072312 intron 4EHP - chr3R 24072539 intron 4EHP - chr3R_25_24070001 chr3R_24070001 RAL-332 1745 chr3R 24076917 24076938 chr3R 24078378 24078405 hobo 6 1464 9.0 7.5 8.2 0.7 1488 chr3R 24076917 intron 4EHP - chr3R 24077661 intron 4EHP - chr3R 24078405 intron 4EHP - chr3R_6_24075001 chr3R_24075001 RAL-332 1746 chr3R 24207221 24207231 chr3R 24212291 24212307 flea 4 5074 11.0 9.5 10.2 0.4 5086 chr3R 24207221 intron twin - chr3R 24209764 intron twin - chr3R 24212307 intron twin - chr3R_4_24205001 chr3R_24205001 RAL-332 1747 chr3R 24207232 24207241 chr3R 24212289 24212312 flea 6 5071 9.0 9.5 9.2 0.6 5080 chr3R 24207232 intron twin - chr3R 24209772 intron twin - chr3R 24212312 intron twin - chr3R_6_24205001 chr3R_24205001 RAL-332 1748 chr3R 21907534 21907536 chr3R 24389465 24389465 10 2481930 28.0 12.5 20.2 0.5 2481931 chr3R 21907534 intergenic CG6678 + chr3R 23148500 intergenic not near genes chr3R 24389465 intron CG5768 - chr3R_10_23145001 chr3R_23145001 RAL-332 1749 chr3R 24433476 24433501 chr3R 24433555 24433580 12 76 10.0 9.5 9.8 1.1 104 chr3R 24433476 intron nAChRalpha1 - chr3R 24433528 intron nAChRalpha1 - chr3R 24433580 intron nAChRalpha1 - chr3R_12_24430001 chr3R_24430001 RAL-332 1750 chr3R 24434243 24434275 chr3R 24434320 24434345 4 76 11.5 11.5 11.5 0.3 102 chr3R 24434243 intron nAChRalpha1 - chr3R 24434294 intron nAChRalpha1 - chr3R 24434345 intron nAChRalpha1 - chr3R_4_24430001 chr3R_24430001 RAL-332 1751 chr3R 24493276 24493307 chr3R 24493505 24493532 BS 11 225 1.5 2.0 1.8 3.9 256 chr3R 24493276 intergenic not near genes chr3R 24493404 intergenic not near genes chr3R 24493532 intergenic not near genes chr3R_11_24490001 chr3R_24490001 RAL-332 1752 chr3R 24495287 24495307 chr3R 24495366 24495379 4 75 36.5 34.5 35.5 0.1 92 chr3R 24495287 intergenic not near genes chr3R 24495333 intergenic not near genes chr3R 24495379 intergenic not near genes chr3R_4_24495001 chr3R_24495001 RAL-332 1753 chr3R 24605551 24605557 chr3R 24605647 24605657 4 99 8.0 15.0 11.5 0.3 106 chr3R 24605551 intron mld + chr3R 24605604 intron mld + chr3R 24605657 intron mld + chr3R_4_24605001 chr3R_24605001 RAL-332 1754 chr3R 24624386 24624392 chr3R 24624465 24624480 5 86 6.5 5.5 6.0 0.7 94 chr3R 24624386 intron Syx18 - chr3R 24624433 intron Syx18 - chr3R 24624480 exon Syx18 - chr3R_5_24620001 chr3R_24620001 RAL-332 1755 chr3R 24670173 24670197 chr3R 24670257 24670281 5 83 0.5 3.5 2.0 1.7 108 chr3R 24670173 intron slo + chr3R 24670227 intron slo + chr3R 24670281 intron slo + chr3R_5_24670001 chr3R_24670001 RAL-332 1756 chr3R 24730090 24730123 chr3R 24732468 24732472 Doc 12 2362 7.0 2.0 4.5 2.2 2382 chr3R 24730090 intron tok + chr3R 24731281 intron tok + chr3R 24732472 intron tok + chr3R_12_24730001 chr3R_24730001 RAL-332 1757 chr3R 24832162 24832194 chr3R 24832269 24832279 13 102 7.0 8.0 7.5 1.5 117 chr3R 24832162 intergenic not near genes chr3R 24832220 intergenic not near genes chr3R 24832279 intergenic not near genes chr3R_13_24830001 chr3R_24830001 RAL-332 1758 chr3R 24842101 24842135 chr3R 24842187 24842221 20 80 4.5 4.0 4.2 3.8 120 chr3R 24842101 5` UTR Esp + chr3R 24842161 5` UTR Esp + chr3R 24842221 5` UTR Esp + chr3R_20_24840001 chr3R_24840001 RAL-332 1759 chr3R 24893466 24893483 chr3R 24893546 24893546 5 75 1.0 0.5 0.8 2.8 80 chr3R 24893466 intron CG31121 - chr3R 24893506 intron CG31121 - chr3R 24893546 intron CG31121 - chr3R_5_24890001 chr3R_24890001 RAL-332 1760 chr3R 24912481 24912504 chr3R 24912563 24912586 4 82 5.0 3.0 4.0 0.8 105 chr3R 24912481 intergenic not near genes chr3R 24912534 intergenic CR44267 + chr3R 24912586 intergenic CR44267 + chr3R_4_24910001 chr3R_24910001 RAL-332 1761 chr3R 24927125 24927162 chr3R 24931916 24931934 Doc 10 4786 4.0 2.5 3.2 2.4 4809 chr3R 24927125 intergenic Trf4-2 + chr3R 24929530 intergenic not near genes chr3R 24931934 intergenic CG11771 + chr3R_10_24925001 chr3R_24925001 RAL-332 1762 chr3R 24974917 24974932 chr3R 24974994 24975004 7 76 4.5 5.5 5.0 1.2 87 chr3R 24974917 intergenic not near genes chr3R 24974960 intergenic not near genes chr3R 24975004 intergenic not near genes chr3R_7_24970001 chr3R_24970001 RAL-332 1763 chr3R 25004902 25004917 chr3R 25004985 25004992 15 81 1.5 6.0 3.8 3.1 90 chr3R 25004902 intron tnc + chr3R 25004947 intron tnc + chr3R 25004992 intron tnc + chr3R_15_25000001 chr3R_25000001 RAL-332 1764 chr3R 25027539 25027567 chr3R 25027752 25027780 13 211 6.5 8.5 7.5 1.5 241 chr3R 25027539 intron Hr96 + chr3R 25027660 intron Hr96 + chr3R 25027780 intron Hr96 + chr3R_13_25025001 chr3R_25025001 RAL-332 1765 chr3R 25050428 25050458 chr3R 25050516 25050546 12 84 18.5 17.0 17.8 0.6 118 chr3R 25050428 intron CG11791 + chr3R 25050487 intron CG11791 + chr3R 25050546 intron CG11791 + chr3R_12_25050001 chr3R_25050001 RAL-332 1766 chr3R 25088776 25088807 chr3R 25088861 25088892 5 80 19.0 20.5 19.8 0.2 116 chr3R 25088776 intergenic not near genes chr3R 25088834 intergenic not near genes chr3R 25088892 intergenic not near genes chr3R_5_25085001 chr3R_25085001 RAL-332 1767 chr3R 25209611 25209614 chr3R 25209687 25209689 4 79 5.0 9.5 7.2 0.5 78 chr3R 25209611 intron CG13654 + chr3R 25209650 intron CG13654 + chr3R 25209689 intron CG13654 + chr3R_4_25205001 chr3R_25205001 RAL-332 1768 chr3R 25209615 25209627 chr3R 25209685 25209709 8 78 4.5 9.0 6.8 1.0 94 chr3R 25209615 intron CG13654 + chr3R 25209662 intron CG13654 + chr3R 25209709 intron CG13654 + chr3R_8_25205001 chr3R_25205001 RAL-332 1769 chr3R 25268046 25268061 chr3R 25272653 25272655 4 4600 20.5 34.5 27.5 0.1 4609 chr3R 25268046 intron CR45214 - chr3R 25270350 exon,5` UTR CG11889 +,CG11891 + chr3R 25272655 3` UTR,exon CG11889 +,CG11891 + chr3R_4_25270001 chr3R_25270001 RAL-332 1770 chr3R 25352483 25352507 chr3R 25352628 25352637 5 142 7.5 8.5 8.0 0.6 154 chr3R 25352483 intron Fur1 - chr3R 25352560 intron Fur1 - chr3R 25352637 intron Fur1 - chr3R_5_25350001 chr3R_25350001 RAL-332 1771 chr3R 25352508 25352510 chr3R 25352625 25352640 4 128 7.5 8.5 8.0 0.4 132 chr3R 25352508 intron Fur1 - chr3R 25352574 intron Fur1 - chr3R 25352640 intron Fur1 - chr3R_4_25350001 chr3R_25350001 RAL-332 1772 chr3R 25368497 25368501 chr3R 25368600 25368619 4 109 2.0 0.5 1.2 1.8 122 chr3R 25368497 intron Fur1 - chr3R 25368558 intron Fur1 - chr3R 25368619 intron Fur1 - chr3R_4_25365001 chr3R_25365001 RAL-332 1773 chr3R 25377091 25377111 chr3R 25377357 25377377 6 266 21.0 17.5 19.2 0.3 286 chr3R 25377091 intron Fur1 - chr3R 25377234 intron Fur1 - chr3R 25377377 intron Fur1 - chr3R_6_25375001 chr3R_25375001 RAL-332 1774 chr3R 25436491 25436520 chr3R 25436585 25436613 8 88 3.5 9.5 6.5 1.1 122 chr3R 25436491 intron Fur1 - chr3R 25436552 intron Fur1 - chr3R 25436613 intron Fur1 - chr3R_8_25435001 chr3R_25435001 RAL-332 1775 chr3R 25448033 25448057 chr3R 25448145 25448161 8 109 6.5 6.5 6.5 1.1 128 chr3R 25448033 intron Fur1 - chr3R 25448097 intron Fur1 - chr3R 25448161 intron Fur1 - chr3R_8_25445001 chr3R_25445001 RAL-332 1776 chr3R 25689137 25689162 chr3R 25689237 25689268 9 103 6.5 5.0 5.8 1.3 131 chr3R 25689137 intergenic not near genes chr3R 25689202 intergenic not near genes chr3R 25689268 intergenic not near genes chr3R_9_25685001 chr3R_25685001 RAL-332 1777 chr3R 25696973 25697000 chr3R 25697448 25697456 10 470 8.5 7.0 7.8 1.1 483 chr3R 25696973 intergenic not near genes chr3R 25697214 intergenic not near genes chr3R 25697456 intergenic not near genes chr3R_10_25695001 chr3R_25695001 RAL-332 1778 chr3R 25716388 25716405 chr3R 25716454 25716483 5 76 11.5 8.5 10.0 0.5 95 chr3R 25716388 intron LpR2 - chr3R 25716436 intron LpR2 - chr3R 25716483 intron LpR2 - chr3R_5_25715001 chr3R_25715001 RAL-332 1779 chr3R 25823981 25824004 chr3R 25824166 25824189 15 180 12.5 13.0 12.8 1.1 208 chr3R 25823981 3` UTR CR44949 - chr3R 25824085 3` UTR CR44949 - chr3R 25824189 3` UTR CR44949 - chr3R_15_25820001 chr3R_25820001 RAL-332 1780 chr3R 25832693 25832721 chr3R 25841874 25841902 roo 13 9178 5.5 11.5 8.5 1.4 9209 chr3R 25832693 exon alpha4GT2 + chr3R 25837298 intron alpha4GT2 + chr3R 25841902 exon alpha4GT2 + chr3R_13_25835001 chr3R_25835001 RAL-332 1781 chr3R 25843645 25843668 chr3R 25843775 25843781 4 124 1.0 2.0 1.5 1.6 136 chr3R 25843645 intergenic CR45653 + chr3R 25843713 intergenic CR45653 + chr3R 25843781 intergenic CR45653 + chr3R_4_25840001 chr3R_25840001 RAL-332 1782 chr3R 25927504 25927536 chr3R 25927586 25927618 10 78 4.0 3.0 3.5 2.2 114 chr3R 25927504 intron CCAP-R - chr3R 25927561 intron CCAP-R - chr3R 25927618 intron CCAP-R - chr3R_10_25925001 chr3R_25925001 RAL-332 1783 chr3R 26061750 26061758 chr3R 26061835 26061855 4 91 5.5 5.0 5.2 0.6 105 chr3R 26061750 intron CG14551 - chr3R 26061802 intron CG14551 - chr3R 26061855 intron CG14551 - chr3R_4_26060001 chr3R_26060001 RAL-332 1784 chr3R 26121966 26122226 chr3R 26122050 26122312 5 91 2.5 17.5 10.0 0.5 346 chr3R 26121966 intron CG31324 + chr3R 26122139 intron CG31324 + chr3R 26122312 intron CG31324 + chr3R_5_26120001 chr3R_26120001 RAL-332 1785 chr3R 26122464 26122478 chr3R 26122540 26122553 8 72 5.5 8.0 6.8 1.0 89 chr3R 26122464 intron CG31324 + chr3R 26122508 intron CG31324 + chr3R 26122553 intron CG31324 + chr3R_8_26120001 chr3R_26120001 RAL-332 1786 chr3R 26139294 26139323 chr3R 26139390 26139418 14 94 9.0 13.5 11.2 1.1 124 chr3R 26139294 intergenic not near genes chr3R 26139356 intergenic not near genes chr3R 26139418 intergenic not near genes chr3R_14_26135001 chr3R_26135001 RAL-332 1787 chr3R 26235489 26235519 chr3R 26235571 26235601 8 73 24.0 25.5 24.8 0.3 112 chr3R 26235489 5` UTR CR42745 + chr3R 26235545 5` UTR CR42745 + chr3R 26235601 5` UTR CR42745 + chr3R_8_26235001 chr3R_26235001 RAL-332 1788 chr3R 26241419 26241446 chr3R 26241499 26241512 11 78 9.0 10.5 9.8 1.0 93 chr3R 26241419 intron CR42745 + chr3R 26241466 intron CR42745 + chr3R 26241512 intron CR42745 + chr3R_11_26240001 chr3R_26240001 RAL-332 1789 chr3R 26292116 26292143 chr3R 26292191 26292216 4 77 2.0 5.0 3.5 0.9 100 chr3R 26292116 intergenic not near genes chr3R 26292166 intergenic not near genes chr3R 26292216 intergenic not near genes chr3R_4_26290001 chr3R_26290001 RAL-332 1790 chr3R 26376334 26376351 chr3R 26385488 26385511 roo 4 9155 5.0 2.0 3.5 0.9 9177 chr3R 26376334 intergenic not near genes chr3R 26380922 intergenic not near genes chr3R 26385511 intergenic not near genes chr3R_4_26380001 chr3R_26380001 RAL-332 1791 chr3R 26450516 26450545 chr3R 26450613 26450627 4 94 7.5 1.0 4.2 0.8 111 chr3R 26450516 exon Hex-t1 + chr3R 26450572 3` UTR Hex-t1 + chr3R 26450627 intergenic Hex-t1 +,Hex-t2 + chr3R_4_26450001 chr3R_26450001 RAL-332 1792 chr3R 26466710 26466734 chr3R 26466823 26466843 10 109 11.0 11.5 11.2 0.8 133 chr3R 26466710 exon CG5455 + chr3R 26466776 exon CG5455 + chr3R 26466843 exon CG5455 + chr3R_10_26465001 chr3R_26465001 RAL-332 1793 chr3R 26558329 26558361 chr3R 26565639 26565666 Stalker4 21 7307 4.5 5.5 5.0 3.5 7337 chr3R 26558329 intron scrib + chr3R 26561998 intron scrib + chr3R 26565666 intron scrib + chr3R_21_26560001 chr3R_26560001 RAL-332 1794 chr3R 26575010 26575039 chr3R 26575087 26575113 10 76 13.0 13.0 13.0 0.7 103 chr3R 26575010 exon scrib + chr3R 26575062 intron scrib + chr3R 26575113 intron scrib + chr3R_10_26575001 chr3R_26575001 RAL-332 1795 chr3R 26642732 26642758 chr3R 26643119 26643148 jockey 9 391 5.0 2.5 3.8 1.9 416 chr3R 26642732 intergenic not near genes chr3R 26642940 intergenic not near genes chr3R 26643148 intergenic not near genes chr3R_9_26640001 chr3R_26640001 RAL-332 1796 chr3R 21907534 21907534 chr3R 26659332 26659334 6 4751798 29.0 27.0 28.0 0.2 4751800 chr3R 21907534 intergenic CG6678 + chr3R 24283434 intergenic CR45662 - chr3R 26659334 intron beat-VII - chr3R_6_24280001 chr3R_24280001 RAL-332 1797 chr3R 21907534 21907535 chr3R 26659336 26659337 8 4751802 29.0 28.0 28.5 0.3 4751803 chr3R 21907534 intergenic CG6678 + chr3R 24283436 intergenic CR45662 - chr3R 26659337 intron beat-VII - chr3R_8_24280001 chr3R_24280001 RAL-332 1798 chr3R 26674531 26674539 chr3R 26674660 26674667 5 129 11.5 13.0 12.2 0.4 136 chr3R 26674531 intron beat-VII - chr3R 26674599 intron beat-VII - chr3R 26674667 intron beat-VII - chr3R_5_26670001 chr3R_26670001 RAL-332 1799 chr3R 26674542 26674557 chr3R 26674656 26674680 11 123 7.0 12.0 9.5 1.0 138 chr3R 26674542 intron beat-VII - chr3R 26674611 intron beat-VII - chr3R 26674680 intron beat-VII - chr3R_11_26670001 chr3R_26670001 RAL-332 1800 chr3R 26685858 26685889 chr3R 26686035 26686051 9 176 9.5 7.0 8.2 1.0 193 chr3R 26685858 intergenic not near genes chr3R 26685954 intergenic not near genes chr3R 26686051 intergenic not near genes chr3R_9_26685001 chr3R_26685001 RAL-332 1801 chr3R 26770246 26770270 chr3R 26770323 26770347 6 76 19.5 18.5 19.0 0.3 101 chr3R 26770246 intergenic CR45563 + chr3R 26770296 intergenic CR45563 + chr3R 26770347 intergenic not near genes chr3R_6_26770001 chr3R_26770001 RAL-332 1802 chr3R 26810571 26810586 chr3R 26811055 26811071 roo 6 484 5.0 14.0 9.5 0.6 500 chr3R 26810571 intron Tl + chr3R 26810821 intron Tl + chr3R 26811071 intron Tl + chr3R_6_26810001 chr3R_26810001 RAL-332 1803 chr3R 26825078 26825086 chr3R 26825138 26825162 5 70 1.5 2.5 2.0 1.7 84 chr3R 26825078 intron Tl + chr3R 26825120 intron Tl + chr3R 26825162 intron Tl + chr3R_5_26825001 chr3R_26825001 RAL-332 1804 chr3R 26827363 26827385 chr3R 26827441 26827463 4 78 9.0 7.0 8.0 0.4 100 chr3R 26827363 intron Tl + chr3R 26827413 intron Tl + chr3R 26827463 intron Tl + chr3R_4_26825001 chr3R_26825001 RAL-332 1805 chr3R 26870799 26870826 chr3R 26870870 26870904 13 74 6.5 6.5 6.5 1.7 105 chr3R 26870799 intron BM-40-SPARC - chr3R 26870852 intron BM-40-SPARC - chr3R 26870904 intron BM-40-SPARC - chr3R_13_26870001 chr3R_26870001 RAL-332 1806 chr3R 26898249 26898264 chr3R 26898337 26898352 6 86 7.5 10.0 8.8 0.6 103 chr3R 26898249 intron T48 + chr3R 26898300 intron T48 + chr3R 26898352 intron T48 + chr3R_6_26895001 chr3R_26895001 RAL-332 1807 chr3R 27028736 27028755 chr3R 27028802 27028825 5 74 4.5 8.5 6.5 0.7 89 chr3R 27028736 intron RYa-R + chr3R 27028780 intron RYa-R + chr3R 27028825 intron RYa-R + chr3R_5_27025001 chr3R_27025001 RAL-332 1808 chr3R 27140517 27140534 chr3R 27148125 27148144 412 13 7606 8.0 8.0 8.0 1.4 7627 chr3R 27140517 intron CG6051 - chr3R 27144330 intron CG6051 - chr3R 27148144 intron CG6051 - chr3R_13_27140001 chr3R_27140001 RAL-332 1809 chr3R 27140535 27140546 chr3R 27148124 27148153 412 6 7600 6.0 7.0 6.5 0.8 7618 chr3R 27140535 intron CG6051 - chr3R 27144344 intron CG6051 - chr3R 27148153 intron CG6051 - chr3R_6_27140001 chr3R_27140001 RAL-332 1810 chr3R 27293396 27293407 chr3R 27293517 27293523 4 122 10.5 5.0 7.8 0.5 127 chr3R 27293396 intergenic not near genes chr3R 27293460 intergenic not near genes chr3R 27293523 intergenic not near genes chr3R_4_27290001 chr3R_27290001 RAL-332 1811 chr3R 27329488 27329500 chr3R 27329556 27329577 5 73 3.5 2.0 2.8 1.3 89 chr3R 27329488 intergenic CG3330 - chr3R 27329532 intergenic CG3330 - chr3R 27329577 intergenic CG3330 - chr3R_5_27325001 chr3R_27325001 RAL-332 1812 chr3R 27342794 27342824 chr3R 27351375 27351384 Tirant 8 8578 6.0 5.5 5.8 1.2 8590 chr3R 27342794 intron CG42534 + chr3R 27347089 intron CG42534 + chr3R 27351384 intron CG42534 + chr3R_8_27345001 chr3R_27345001 RAL-332 1813 chr3R 27377472 27377501 chr3R 27377560 27377589 5 86 12.0 11.5 11.8 0.4 117 chr3R 27377472 3` UTR side - chr3R 27377530 3` UTR side - chr3R 27377589 3` UTR side - chr3R_5_27375001 chr3R_27375001 RAL-332 1814 chr3R 27445248 27445279 chr3R 27445325 27445351 7 69 7.0 8.5 7.8 0.8 103 chr3R 27445248 intergenic not near genes chr3R 27445300 intergenic not near genes chr3R 27445351 intergenic not near genes chr3R_7_27445001 chr3R_27445001 RAL-332 1815 chr3R 27494338 27494347 chr3R 27494439 27494465 5 106 2.0 5.0 3.5 1.1 127 chr3R 27494338 intergenic not near genes chr3R 27494402 intergenic not near genes chr3R 27494465 intergenic not near genes chr3R_5_27490001 chr3R_27490001 RAL-332 1816 chr3R 27496591 27496604 chr3R 27496696 27496709 7 104 3.0 2.5 2.8 1.8 118 chr3R 27496591 intergenic not near genes chr3R 27496650 intergenic not near genes chr3R 27496709 intergenic not near genes chr3R_7_27495001 chr3R_27495001 RAL-332 1817 chr3R 27648602 27648866 chr3R 27648676 27648943 18 74 6.5 0.0 3.2 4.3 341 chr3R 27648602 intron tau - chr3R 27648772 intron tau - chr3R 27648943 intron tau - chr3R_18_27645001 chr3R_27645001 RAL-332 1818 chr3R 27706778 27706807 chr3R 27706855 27706882 5 69 3.0 2.5 2.8 1.3 104 chr3R 27706778 intergenic CG12428 -,CG12877 + chr3R 27706830 intergenic CG12428 -,CG12877 + chr3R 27706882 intergenic CG12428 -,CG12877 + chr3R_5_27705001 chr3R_27705001 RAL-332 1819 chr3R 27725571 27725598 chr3R 27731013 27731033 I-element 5 5436 1.5 4.5 3.0 1.2 5462 chr3R 27725571 intergenic not near genes chr3R 27728302 intergenic not near genes chr3R 27731033 intergenic not near genes chr3R_5_27725001 chr3R_27725001 RAL-332 1820 chr3R 27731202 27731210 chr3R 27731280 27731289 4 79 17.5 18.0 17.8 0.2 87 chr3R 27731202 intergenic not near genes chr3R 27731246 intergenic not near genes chr3R 27731289 intergenic not near genes chr3R_4_27730001 chr3R_27730001 RAL-332 1821 chr3R 27731212 27731230 chr3R 27731277 27731311 7 68 13.5 17.5 15.5 0.4 99 chr3R 27731212 intergenic not near genes chr3R 27731262 intergenic not near genes chr3R 27731311 intergenic not near genes chr3R_7_27730001 chr3R_27730001 RAL-332 1822 chr3R 27779270 27779286 chr3R 27779348 27779366 8 76 13.5 17.5 15.5 0.5 96 chr3R 27779270 exon CG34353 - chr3R 27779318 intron CG34353 - chr3R 27779366 intron CG34353 - chr3R_8_27775001 chr3R_27775001 RAL-332 1823 chr3R 27799937 27799959 chr3R 27800019 27800041 8 81 6.5 5.5 6.0 1.1 104 chr3R 27799937 intron CG34353 - chr3R 27799989 intron CG34353 - chr3R 27800041 intron CG34353 - chr3R_8_27795001 chr3R_27795001 RAL-332 1824 chr3R 27852364 27852387 chr3R 27853482 27853496 4 1112 42.5 36.0 39.2 0.1 1132 chr3R 27852364 intron CG34353 - chr3R 27852930 intron CG34353 - chr3R 27853496 intron CG34353 - chr3R_4_27850001 chr3R_27850001 RAL-332 1825 chr3R 27856764 27856775 chr3R 27858247 27858258 hopper2 6 1483 9.0 4.5 6.8 0.8 1494 chr3R 27856764 intron CG34353 - chr3R 27857511 intron CG34353 - chr3R 27858258 intron CG34353 - chr3R_6_27855001 chr3R_27855001 RAL-332 1826 chr3R 27856777 27856793 chr3R 27858246 27858275 hopper2 5 1477 4.0 4.0 4.0 1.0 1498 chr3R 27856777 intron CG34353 - chr3R 27857526 intron CG34353 - chr3R 27858275 intron CG34353 - chr3R_5_27855001 chr3R_27855001 RAL-332 1827 chr3R 27875700 27875728 chr3R 27882755 27882773 297 5 7049 6.0 1.5 3.8 1.0 7073 chr3R 27875700 intron CG34353 - chr3R 27879236 intron CG34353 - chr3R 27882773 intron CG34353 - chr3R_5_27875001 chr3R_27875001 RAL-332 1828 chr3R 27953361 27953391 chr3R 27953488 27953522 20 126 14.0 19.0 16.5 1.1 161 chr3R 27953361 intron CG4951 - chr3R 27953442 intron CG4951 - chr3R 27953522 exon CG4951 - chr3R_20_27950001 chr3R_27950001 RAL-332 1829 chr3R 28054450 28054472 chr3R 28054517 28054538 9 72 14.0 10.5 12.2 0.7 88 chr3R 28054450 intron CG34362 + chr3R 28054494 intron CG34362 + chr3R 28054538 intron CG34362 + chr3R_9_28050001 chr3R_28050001 RAL-332 1830 chr3R 28068496 28068521 chr3R 28073938 28073953 I-element 11 5439 3.5 4.0 3.8 2.3 5457 chr3R 28068496 intron CG34362 + chr3R 28071224 intron CG34362 + chr3R 28073953 intron CG34362 + chr3R_11_28070001 chr3R_28070001 RAL-332 1831 chr3R 28068523 28068529 chr3R 28073929 28073952 I-element 6 5424 2.5 2.5 2.5 1.7 5429 chr3R 28068523 intron CG34362 + chr3R 28071238 intron CG34362 + chr3R 28073952 intron CG34362 + chr3R_6_28070001 chr3R_28070001 RAL-332 1832 chr3R 28102586 28102600 chr3R 28102809 28102838 4 232 19.5 5.5 12.5 0.3 252 chr3R 28102586 intergenic not near genes chr3R 28102712 intergenic not near genes chr3R 28102838 intergenic not near genes chr3R_4_28100001 chr3R_28100001 RAL-332 1833 chr3R 28103324 28103359 chr3R 28103416 28103452 5 92 10.5 11.0 10.8 0.4 128 chr3R 28103324 intergenic not near genes chr3R 28103388 intergenic not near genes chr3R 28103452 intergenic not near genes chr3R_5_28100001 chr3R_28100001 RAL-332 1834 chr3R 28115517 28115543 chr3R 28115586 28115619 9 70 9.0 6.5 7.8 1.0 102 chr3R 28115517 intergenic not near genes chr3R 28115568 intergenic not near genes chr3R 28115619 intergenic not near genes chr3R_9_28115001 chr3R_28115001 RAL-332 1835 chr3R 28118568 28118865 chr3R 28118700 28118946 12 113 22.0 20.5 21.2 0.5 378 chr3R 28118568 intergenic not near genes chr3R 28118757 intergenic not near genes chr3R 28118946 intergenic not near genes chr3R_12_28115001 chr3R_28115001 RAL-332 1836 chr3R 28132500 28132515 chr3R 28132572 28132597 5 74 10.0 6.5 8.2 0.5 97 chr3R 28132500 intergenic not near genes chr3R 28132548 intergenic not near genes chr3R 28132597 intergenic not near genes chr3R_5_28130001 chr3R_28130001 RAL-332 1837 chr3R 28173668 28173705 chr3R 28181098 28181135 mdg1 9 7426 2.5 2.5 2.5 2.6 7467 chr3R 28173668 intron CG34354 + chr3R 28177402 intron CG34354 + chr3R 28181135 intron CG34354 + chr3R_9_28175001 chr3R_28175001 RAL-332 1838 chr3R 28253347 28253353 chr3R 28255849 28255863 jockey 9 2507 4.0 6.5 5.2 1.5 2516 chr3R 28253347 intergenic not near genes chr3R 28254605 intergenic not near genes chr3R 28255863 intergenic not near genes chr3R_9_28250001 chr3R_28250001 RAL-332 1839 chr3R 28253358 28253366 chr3R 28255843 28255862 jockey 10 2498 3.0 5.5 4.2 1.9 2504 chr3R 28253358 intergenic not near genes chr3R 28254610 intergenic not near genes chr3R 28255862 intergenic not near genes chr3R_10_28250001 chr3R_28250001 RAL-332 1840 chr3R 28262675 28262685 chr3R 28262751 28262761 6 74 13.5 14.5 14.0 0.4 86 chr3R 28262675 intergenic CG43125 - chr3R 28262718 intergenic CG43125 - chr3R 28262761 exon CG43125 - chr3R_6_28260001 chr3R_28260001 RAL-332 1841 chr3R 28282991 28283007 chr3R 28283620 28283633 6 628 5.0 4.5 4.8 1.0 642 chr3R 28282991 exon CG34436 + chr3R 28283312 exon CG34436 + chr3R 28283633 intergenic CG34436 +,CG34437 + chr3R_6_28280001 chr3R_28280001 RAL-332 1842 chr3R 28302110 28302134 chr3R 28302539 28302562 jockey 13 433 3.0 4.5 3.8 2.7 452 chr3R 28302110 intergenic not near genes chr3R 28302336 intergenic not near genes chr3R 28302562 intergenic not near genes chr3R_13_28300001 chr3R_28300001 RAL-332 1843 chr3R 28345647 28345668 chr3R 28345723 28345744 4 72 5.0 1.0 3.0 1.0 97 chr3R 28345647 intergenic Moca-cyp + chr3R 28345696 intergenic not near genes chr3R 28345744 intergenic not near genes chr3R_4_28345001 chr3R_28345001 RAL-332 1844 chr3R 28380813 28380823 chr3R 28381023 28381051 5 218 6.0 9.5 7.8 0.6 238 chr3R 28380813 intergenic not near genes chr3R 28380932 intergenic not near genes chr3R 28381051 intergenic not near genes chr3R_5_28380001 chr3R_28380001 RAL-332 1845 chr3R 28393702 28393731 chr3R 28393802 28393831 8 97 5.0 4.0 4.5 1.5 129 chr3R 28393702 intergenic not near genes chr3R 28393766 intergenic not near genes chr3R 28393831 intergenic not near genes chr3R_8_28390001 chr3R_28390001 RAL-332 1846 chr3R 28407705 28407738 chr3R 28407790 28407824 14 82 10.0 11.0 10.5 1.2 119 chr3R 28407705 intergenic not near genes chr3R 28407764 intergenic not near genes chr3R 28407824 intergenic not near genes chr3R_14_28405001 chr3R_28405001 RAL-332 1847 chr3R 28425188 28425221 chr3R 28425264 28425300 16 74 3.5 5.0 4.2 3.1 112 chr3R 28425188 intron beat-VI + chr3R 28425244 intron beat-VI + chr3R 28425300 intron beat-VI + chr3R_16_28425001 chr3R_28425001 RAL-332 1848 chr3R 28441288 28441309 chr3R 28441367 28441379 5 74 10.0 10.0 10.0 0.5 91 chr3R 28441288 intron beat-VI + chr3R 28441334 intron beat-VI + chr3R 28441379 intron beat-VI + chr3R_5_28440001 chr3R_28440001 RAL-332 1849 chr3R 28478488 28478523 chr3R 28478564 28478599 11 73 10.5 11.0 10.8 0.9 111 chr3R 28478488 intergenic not near genes chr3R 28478544 intergenic not near genes chr3R 28478599 intergenic not near genes chr3R_11_28475001 chr3R_28475001 RAL-332 1850 chr3R 28478993 28479168 chr3R 28479087 28479245 17 86 2.5 5.0 3.8 3.5 252 chr3R 28478993 intergenic not near genes chr3R 28479119 intergenic not near genes chr3R 28479245 intergenic not near genes chr3R_17_28475001 chr3R_28475001 RAL-332 1851 chr3R 28648718 28648739 chr3R 28648832 28648851 13 110 12.0 10.0 11.0 1.1 133 chr3R 28648718 intergenic not near genes chr3R 28648784 intergenic not near genes chr3R 28648851 intergenic not near genes chr3R_13_28645001 chr3R_28645001 RAL-332 1852 chr3R 28792874 28792880 chr3R 28797968 28797975 jockey 5 5095 5.5 9.0 7.2 0.6 5101 chr3R 28792874 intergenic not near genes chr3R 28795424 intergenic not near genes chr3R 28797975 intergenic not near genes chr3R_5_28795001 chr3R_28795001 RAL-332 1853 chr3R 28792881 28792904 chr3R 28797967 28797986 jockey 8 5087 2.0 8.0 5.0 1.3 5105 chr3R 28792881 intergenic not near genes chr3R 28795434 intergenic not near genes chr3R 28797986 intergenic not near genes chr3R_8_28795001 chr3R_28795001 RAL-332 1854 chr3R 21907534 21907536 chr3R 28831799 28831802 113 6924266 28.0 34.5 31.2 3.5 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_113_25365001 chr3R_25365001 RAL-332 1855 chr3R 28870625 28870649 chr3R 28870702 28870732 5 82 4.0 2.5 3.2 1.2 107 chr3R 28870625 3` UTR CG33203 - chr3R 28870678 3` UTR CG33203 - chr3R 28870732 3` UTR CG33203 - chr3R_5_28870001 chr3R_28870001 RAL-332 1856 chr3R 28971175 28971192 chr3R 28971256 28971273 4 81 1.5 2.5 2.0 1.3 98 chr3R 28971175 5` UTR CR45669 + chr3R 28971224 5` UTR CR45669 + chr3R 28971273 5` UTR CR45669 + chr3R_4_28970001 chr3R_28970001 RAL-332 1857 chr3R 21907534 21907536 chr3R 29013340 29013340 20 7105805 28.0 21.0 24.5 0.8 7105806 chr3R 21907534 intergenic CG6678 + chr3R 25460437 intron Fur1 - chr3R 29013340 intron wat - chr3R_20_25460001 chr3R_25460001 RAL-332 1858 chr3R 29079401 29079407 chr3R 29080773 29080779 NOF 4 1372 4.0 1.5 2.8 1.1 1378 chr3R 29079401 intron CG11873 + chr3R 29080090 intron CG11873 + chr3R 29080779 intron CG11873 + chr3R_4_29080001 chr3R_29080001 RAL-332 1859 chr3R 29123716 29123742 chr3R 29123889 29123916 8 171 10.5 11.0 10.8 0.7 200 chr3R 29123716 intron CG11880 + chr3R 29123816 5` UTR CG11880 + chr3R 29123916 5` UTR CG11880 + chr3R_8_29120001 chr3R_29120001 RAL-332 1860 chr3R 29213061 29213070 chr3R 29213144 29213153 6 83 11.5 7.5 9.5 0.6 92 chr3R 29213061 intergenic not near genes chr3R 29213107 intergenic not near genes chr3R 29213153 intergenic not near genes chr3R_6_29210001 chr3R_29210001 RAL-332 1861 chr3R 29213072 29213091 chr3R 29213142 29213174 13 78 6.5 7.5 7.0 1.6 102 chr3R 29213072 intergenic not near genes chr3R 29213123 intergenic not near genes chr3R 29213174 intergenic not near genes chr3R_13_29210001 chr3R_29210001 RAL-332 1862 chr3R 29237257 29237329 chr3R 29239268 29239341 11 2015 26.5 5.5 16.0 0.6 2084 chr3R 29237257 exon CG11951 - chr3R 29238299 intron CG11951 - chr3R 29239341 exon CG31427 - chr3R_11_29235001 chr3R_29235001 RAL-332 1863 chr3R 29239236 29239248 chr3R 29245516 29245539 7 6288 6.0 28.0 17.0 0.4 6303 chr3R 29239236 exon CG31427 - chr3R 29242388 exon CG31445 - chr3R 29245539 exon SP1029 - chr3R_7_29240001 chr3R_29240001 RAL-332 1864 chr3R 29292048 29292078 chr3R 29292129 29292145 6 78 3.0 7.0 5.0 1.0 97 chr3R 29292048 intergenic not near genes chr3R 29292096 intergenic not near genes chr3R 29292145 intergenic not near genes chr3R_6_29290001 chr3R_29290001 RAL-332 1865 chr3R 29319821 29319859 chr3R 29320140 29320155 jockey 8 313 0.0 1.0 0.5 5.3 334 chr3R 29319821 intergenic Cnx99A - chr3R 29319988 intergenic Cnx99A - chr3R 29320155 intergenic not near genes chr3R_8_29315001 chr3R_29315001 RAL-332 1866 chr3R 29332295 29332382 chr3R 29332360 29332444 11 77 5.0 4.5 4.8 1.9 149 chr3R 29332295 intergenic not near genes chr3R 29332370 intergenic not near genes chr3R 29332444 intergenic not near genes chr3R_11_29330001 chr3R_29330001 RAL-332 1867 chr3R 29355955 29356077 chr3R 29356034 29356150 10 74 8.5 5.5 7.0 1.2 195 chr3R 29355955 intergenic CR45547 - chr3R 29356052 intergenic CR45547 - chr3R 29356150 3` UTR CR45547 - chr3R_10_29355001 chr3R_29355001 RAL-332 1868 chr3R 29406631 29406649 chr3R 29407895 29407915 jockey 12 1276 7.5 4.5 6.0 1.7 1284 chr3R 29406631 intron Ptp99A + chr3R 29407273 intron Ptp99A + chr3R 29407915 intron Ptp99A + chr3R_12_29405001 chr3R_29405001 RAL-332 1869 chr3R 29449371 29449388 chr3R 29449441 29449466 5 74 6.5 7.0 6.8 0.6 95 chr3R 29449371 intron Ptp99A + chr3R 29449418 intron Ptp99A + chr3R 29449466 intron Ptp99A + chr3R_5_29445001 chr3R_29445001 RAL-332 1870 chr3R 29451594 29451623 chr3R 29451675 29451704 15 79 8.0 9.5 8.8 1.5 110 chr3R 29451594 intron Ptp99A + chr3R 29451649 intron Ptp99A + chr3R 29451704 intron Ptp99A + chr3R_15_29450001 chr3R_29450001 RAL-332 1871 chr3R 29472027 29472039 chr3R 29472100 29472126 4 86 4.5 5.0 4.8 0.7 99 chr3R 29472027 intron Ptp99A + chr3R 29472076 intron Ptp99A + chr3R 29472126 intron Ptp99A + chr3R_4_29470001 chr3R_29470001 RAL-332 1872 chr3R 29474432 29474459 chr3R 29474519 29474546 5 82 1.5 1.5 1.5 2.0 114 chr3R 29474432 intron Ptp99A + chr3R 29474489 intron Ptp99A + chr3R 29474546 intron Ptp99A + chr3R_5_29470001 chr3R_29470001 RAL-332 1873 chr3R 29505914 29505925 chr3R 29505973 29506002 5 73 0.5 7.0 3.8 1.0 88 chr3R 29505914 intergenic not near genes chr3R 29505958 intergenic not near genes chr3R 29506002 intergenic not near genes chr3R_5_29505001 chr3R_29505001 RAL-332 1874 chr3R 29534956 29534985 chr3R 29535066 29535071 4 102 4.5 5.5 5.0 0.7 115 chr3R 29534956 5` UTR CR43613 + chr3R 29535014 5` UTR CR43613 + chr3R 29535071 5` UTR CR43613 + chr3R_4_29535001 chr3R_29535001 RAL-332 1875 chr3R 29590376 29590379 chr3R 29590469 29590472 4 93 9.5 9.0 9.2 0.4 96 chr3R 29590376 intron CG31041 - chr3R 29590424 intron CG31041 - chr3R 29590472 intron CG31041 - chr3R_4_29590001 chr3R_29590001 RAL-332 1876 chr3R 29590380 29590397 chr3R 29590468 29590490 9 89 5.0 9.0 7.0 1.1 110 chr3R 29590380 intron CG31041 - chr3R 29590435 intron CG31041 - chr3R 29590490 intron CG31041 - chr3R_9_29590001 chr3R_29590001 RAL-332 1877 chr3R 29624117 29624143 chr3R 29624197 29624221 5 75 11.5 14.5 13.0 0.4 104 chr3R 29624117 intergenic not near genes chr3R 29624169 intergenic not near genes chr3R 29624221 intergenic not near genes chr3R_5_29620001 chr3R_29620001 RAL-332 1878 chr3R 29663050 29663085 chr3R 29663334 29663369 16 281 3.5 12.5 8.0 1.8 319 chr3R 29663050 intergenic not near genes chr3R 29663210 intergenic not near genes chr3R 29663369 intergenic not near genes chr3R_16_29660001 chr3R_29660001 RAL-332 1879 chr3R 29681329 29681357 chr3R 29681540 29681568 8 209 6.5 7.5 7.0 1.0 239 chr3R 29681329 intron CG7582 - chr3R 29681448 intron CG7582 - chr3R 29681568 intron CG7582 - chr3R_8_29680001 chr3R_29680001 RAL-332 1880 chr3R 29718146 29718177 chr3R 29718222 29718253 6 74 8.5 8.5 8.5 0.6 107 chr3R 29718146 intergenic not near genes chr3R 29718200 intergenic CG15506 + chr3R 29718253 intergenic CG15506 + chr3R_6_29715001 chr3R_29715001 RAL-332 1881 chr3R 29758940 29758967 chr3R 29759014 29759027 15 73 7.0 11.0 9.0 1.5 87 chr3R 29758940 3` UTR CR44953 - chr3R 29758984 3` UTR CR44953 - chr3R 29759027 3` UTR CR44953 - chr3R_15_29755001 chr3R_29755001 RAL-332 1882 chr3R 29882029 29882053 chr3R 29891175 29891210 roo 10 9155 1.5 3.5 2.5 2.9 9181 chr3R 29882029 intron CG31038 + chr3R 29886620 intron CG31038 + chr3R 29891210 intron CG31038 + chr3R_10_29885001 chr3R_29885001 RAL-332 1883 chr3R 29950586 29950598 chr3R 29950651 29950674 12 68 6.0 4.5 5.2 1.9 88 chr3R 29950586 intergenic TkR99D - chr3R 29950630 intergenic TkR99D - chr3R 29950674 intergenic TkR99D - chr3R_12_29950001 chr3R_29950001 RAL-332 1884 chr3R 29963484 29963512 chr3R 29963579 29963614 18 96 2.5 9.0 5.8 2.6 130 chr3R 29963484 intron TkR99D - chr3R 29963549 intron TkR99D - chr3R 29963614 intron TkR99D - chr3R_18_29960001 chr3R_29960001 RAL-332 1885 chr3R 29966062 29966071 chr3R 29966139 29966154 5 77 8.5 8.0 8.2 0.5 92 chr3R 29966062 intron TkR99D - chr3R 29966108 intron TkR99D - chr3R 29966154 intron TkR99D - chr3R_5_29965001 chr3R_29965001 RAL-332 1886 chr3R 29982997 29983028 chr3R 29983125 29983156 10 119 4.0 4.5 4.2 1.9 159 chr3R 29982997 intergenic CG7896 + chr3R 29983076 intergenic CG7896 + chr3R 29983156 intergenic CG7896 + chr3R_10_29980001 chr3R_29980001 RAL-332 1887 chr3R 30050299 30050316 chr3R 30050406 30050423 7 107 6.5 6.5 6.5 0.9 124 chr3R 30050299 intron,intron CG15528 -,CR44046 + chr3R 30050361 intron,intron CG15528 -,CR44046 + chr3R 30050423 intron,intron CG15528 -,CR44046 + chr3R_7_30050001 chr3R_30050001 RAL-332 1888 chr3R 30084850 30084885 chr3R 30086317 30086334 hobo 16 1461 3.5 4.5 4.0 3.2 1484 chr3R 30084850 intron sima + chr3R 30085592 intron sima + chr3R 30086334 intron sima + chr3R_16_30085001 chr3R_30085001 RAL-332 1889 chr3R 30182756 30182779 chr3R 30182895 30182916 8 136 5.0 5.5 5.2 1.3 160 chr3R 30182756 intergenic not near genes chr3R 30182836 intergenic not near genes chr3R 30182916 intergenic not near genes chr3R_8_30180001 chr3R_30180001 RAL-332 1890 chr3R 30238761 30238788 chr3R 30239925 30239937 1360 6 1158 3.0 1.0 2.0 2.0 1176 chr3R 30238761 intergenic not near genes chr3R 30239349 intergenic not near genes chr3R 30239937 intergenic not near genes chr3R_6_30235001 chr3R_30235001 RAL-332 1891 chr3R 30268413 30268447 chr3R 30268494 30268525 12 74 8.5 6.5 7.5 1.4 112 chr3R 30268413 intergenic not near genes chr3R 30268469 intergenic not near genes chr3R 30268525 intergenic not near genes chr3R_12_30265001 chr3R_30265001 RAL-332 1892 chr3R 30317328 30317358 chr3R 30324920 30324950 roo 7 7586 1.0 4.0 2.5 2.0 7622 chr3R 30317328 intron hdc + chr3R 30321139 intron hdc + chr3R 30324950 intron hdc + chr3R_7_30320001 chr3R_30320001 RAL-332 1893 chr3R 30330495 30330508 chr3R 30330575 30330578 4 75 20.0 15.0 17.5 0.2 83 chr3R 30330495 intron hdc + chr3R 30330536 intron hdc + chr3R 30330578 intron hdc + chr3R_4_30330001 chr3R_30330001 RAL-332 1894 chr3R 30345991 30346011 chr3R 30349009 30349031 4 3021 38.5 27.0 32.8 0.1 3040 chr3R 30345991 intron hdc + chr3R 30347511 intron hdc + chr3R 30349031 intron hdc + chr3R_4_30345001 chr3R_30345001 RAL-332 1895 chr3R 30375546 30375569 chr3R 30383169 30383180 412 4 7618 2.0 6.0 4.0 0.8 7634 chr3R 30375546 intergenic not near genes chr3R 30379363 intergenic not near genes chr3R 30383180 intergenic not near genes chr3R_4_30375001 chr3R_30375001 RAL-332 1896 chr3R 30396216 30396243 chr3R 30404482 30404495 roo 7 8263 4.0 6.0 5.0 1.2 8279 chr3R 30396216 intergenic not near genes chr3R 30400356 intergenic not near genes chr3R 30404495 5` UTR CR45570 + chr3R_7_30400001 chr3R_30400001 RAL-332 1897 chr3R 30456389 30456423 chr3R 30456469 30456492 6 77 1.0 5.5 3.2 1.4 103 chr3R 30456389 intergenic CG2224 - chr3R 30456440 3` UTR CG2224 - chr3R 30456492 3` UTR CG2224 - chr3R_6_30455001 chr3R_30455001 RAL-332 1898 chr3R 30458012 30458048 chr3R 30458092 30458127 8 77 1.5 4.0 2.8 2.1 115 chr3R 30458012 intron CG2224 - chr3R 30458070 intron CG2224 - chr3R 30458127 intron CG2224 - chr3R_8_30455001 chr3R_30455001 RAL-332 1899 chr3R 30480473 30480510 chr3R 30482940 30482966 jockey 19 2462 5.5 6.5 6.0 2.7 2493 chr3R 30480473 intron PH4alphaEFB + chr3R 30481720 intron PH4alphaEFB + chr3R 30482966 intron PH4alphaEFB + chr3R_19_30480001 chr3R_30480001 RAL-332 1900 chr3R 30548321 30548336 chr3R 30548399 30548405 5 73 5.5 7.5 6.5 0.7 84 chr3R 30548321 intron tmod + chr3R 30548363 intron tmod + chr3R 30548405 intron tmod + chr3R_5_30545001 chr3R_30545001 RAL-332 1901 chr3R 30566754 30566773 chr3R 30566834 30566867 9 86 9.5 11.0 10.2 0.8 113 chr3R 30566754 intron tmod + chr3R 30566810 intron tmod + chr3R 30566867 intron tmod + chr3R_9_30565001 chr3R_30565001 RAL-332 1902 chr3R 30592506 30592516 chr3R 30592616 30592626 6 109 11.5 5.0 8.2 0.7 120 chr3R 30592506 intergenic CG2246 - chr3R 30592566 intergenic CG2246 - chr3R 30592626 intergenic CG2246 - chr3R_6_30590001 chr3R_30590001 RAL-332 1903 chr3R 30592517 30592539 chr3R 30592615 30592648 15 106 5.0 4.5 4.8 2.6 131 chr3R 30592517 intergenic CG2246 - chr3R 30592582 intergenic CG2246 - chr3R 30592648 intergenic CG2246 - chr3R_15_30590001 chr3R_30590001 RAL-332 1904 chr3R 30627606 30627621 chr3R 30627685 30627701 8 79 12.5 9.0 10.8 0.7 95 chr3R 30627606 exon CG2267 - chr3R 30627654 exon CG2267 - chr3R 30627701 exon CG2267 - chr3R_8_30625001 chr3R_30625001 RAL-332 1905 chr3R 30627622 30627638 chr3R 30627681 30627697 10 68 6.5 8.0 7.2 1.2 75 chr3R 30627622 exon CG2267 - chr3R 30627660 exon CG2267 - chr3R 30627697 exon CG2267 - chr3R_10_30625001 chr3R_30625001 RAL-332 1906 chr3R 30679522 30679540 chr3R 30686991 30687009 blood 9 7468 6.5 8.0 7.2 1.1 7487 chr3R 30679522 intergenic not near genes chr3R 30683266 intergenic not near genes chr3R 30687009 intergenic not near genes chr3R_9_30680001 chr3R_30680001 RAL-332 1907 chr3R 30679541 30679551 chr3R 30686989 30687018 blood 11 7463 4.5 7.0 5.8 1.6 7477 chr3R 30679541 intergenic not near genes chr3R 30683280 intergenic not near genes chr3R 30687018 intergenic not near genes chr3R_11_30680001 chr3R_30680001 RAL-332 1908 chr3R 30690168 30690192 chr3R 30690252 30690265 5 81 24.0 25.0 24.5 0.2 97 chr3R 30690168 intergenic Spn100A + chr3R 30690216 intergenic Spn100A + chr3R 30690265 intergenic Spn100A + chr3R_5_30690001 chr3R_30690001 RAL-332 1909 chr3R 30868730 30868754 chr3R 30868806 30868811 4 71 6.5 5.0 5.8 0.6 81 chr3R 30868730 3` UTR Cpr100A + chr3R 30868770 3` UTR Cpr100A + chr3R 30868811 3` UTR Cpr100A + chr3R_4_30865001 chr3R_30865001 RAL-332 1910 chr3R 30948074 30948107 chr3R 30948265 30948297 13 189 8.0 4.5 6.2 1.8 223 chr3R 30948074 intergenic not near genes chr3R 30948186 intergenic not near genes chr3R 30948297 intergenic not near genes chr3R_13_30945001 chr3R_30945001 RAL-332 1911 chr3R 30973152 30973166 chr3R 30973296 30973327 7 154 4.0 6.5 5.2 1.1 175 chr3R 30973152 intron 5-HT7 - chr3R 30973240 intron 5-HT7 - chr3R 30973327 intron 5-HT7 - chr3R_7_30970001 chr3R_30970001 RAL-332 1912 chr3R 30982610 30982630 chr3R 30982686 30982717 5 82 6.5 2.0 4.2 1.0 107 chr3R 30982610 intron 5-HT7 - chr3R 30982664 intron 5-HT7 - chr3R 30982717 intron 5-HT7 - chr3R_5_30980001 chr3R_30980001 RAL-332 1913 chr3R 30996650 30996667 chr3R 30996860 30996891 6 220 8.5 8.5 8.5 0.6 241 chr3R 30996650 intron 5-HT7 - chr3R 30996770 intron 5-HT7 - chr3R 30996891 intron 5-HT7 - chr3R_6_30995001 chr3R_30995001 RAL-332 1914 chr3R 31026491 31026523 chr3R 31026569 31026604 11 77 8.5 11.5 10.0 1.0 113 chr3R 31026491 intergenic not near genes chr3R 31026548 intergenic not near genes chr3R 31026604 intergenic not near genes chr3R_11_31025001 chr3R_31025001 RAL-332 1915 chr3R 31067022 31067053 chr3R 31067149 31067165 7 111 22.5 25.5 24.0 0.3 143 chr3R 31067022 intron Sox100B + chr3R 31067094 intron Sox100B + chr3R 31067165 intron Sox100B + chr3R_7_31065001 chr3R_31065001 RAL-332 1916 chr3R 31074234 31074262 chr3R 31081831 31081859 springer 9 7596 6.5 4.0 5.2 1.5 7625 chr3R 31074234 intron Sox100B + chr3R 31078046 intron Sox100B + chr3R 31081859 intron Sox100B + chr3R_9_31075001 chr3R_31075001 RAL-332 1917 chr3R 31084908 31084933 chr3R 31084984 31085009 5 76 2.0 1.5 1.8 1.8 101 chr3R 31084908 intergenic not near genes chr3R 31084958 intergenic not near genes chr3R 31085009 intergenic not near genes chr3R_5_31080001 chr3R_31080001 RAL-332 1918 chr3R 31137155 31137186 chr3R 31137235 31137254 11 76 6.0 6.0 6.0 1.6 99 chr3R 31137155 intron Gycbeta100B + chr3R 31137204 intron Gycbeta100B + chr3R 31137254 intron Gycbeta100B + chr3R_11_31135001 chr3R_31135001 RAL-332 1919 chr3R 31146765 31146776 chr3R 31146826 31146849 5 74 2.0 6.0 4.0 1.0 84 chr3R 31146765 intron Gycbeta100B + chr3R 31146807 intron Gycbeta100B + chr3R 31146849 intron Gycbeta100B + chr3R_5_31145001 chr3R_31145001 RAL-332 1920 chr3R 31256676 31256689 chr3R 31256764 31256777 4 88 7.5 10.5 9.0 0.4 101 chr3R 31256676 intergenic spn-F + chr3R 31256726 intergenic spn-F + chr3R 31256777 intergenic spn-F + chr3R_4_31255001 chr3R_31255001 RAL-332 1921 chr3R 31279389 31279409 chr3R 31285565 31285584 diver 9 6183 3.5 7.5 5.5 1.4 6195 chr3R 31279389 intergenic not near genes chr3R 31282486 intergenic not near genes chr3R 31285584 intergenic not near genes chr3R_9_31280001 chr3R_31280001 RAL-332 1922 chr3R 31412714 31412724 chr3R 31412802 31412817 5 90 7.0 3.0 5.0 0.8 103 chr3R 31412714 intron Gprk2 + chr3R 31412766 intron Gprk2 + chr3R 31412817 intron Gprk2 + chr3R_5_31410001 chr3R_31410001 RAL-332 1923 chr3R 31412725 31412743 chr3R 31412801 31412836 7 89 3.5 3.0 3.2 1.7 111 chr3R 31412725 intron Gprk2 + chr3R 31412780 intron Gprk2 + chr3R 31412836 intron Gprk2 + chr3R_7_31410001 chr3R_31410001 RAL-332 1924 chr3R 31413088 31413122 chr3R 31418288 31418322 copia 20 5195 3.5 1.0 2.2 6.2 5234 chr3R 31413088 intron Gprk2 + chr3R 31415705 intron Gprk2 + chr3R 31418322 intron Gprk2 + chr3R_20_31415001 chr3R_31415001 RAL-332 1925 chr3R 31426877 31426911 chr3R 31426969 31427003 14 90 0.5 2.5 1.5 5.6 126 chr3R 31426877 intron Gprk2 + chr3R 31426940 intron Gprk2 + chr3R 31427003 intron Gprk2 + chr3R_14_31425001 chr3R_31425001 RAL-332 1926 chr3R 31435365 31435390 chr3R 31435516 31435541 7 146 1.5 3.0 2.2 2.2 176 chr3R 31435365 intron Gprk2 + chr3R 31435453 intron Gprk2 + chr3R 31435541 intron Gprk2 + chr3R_7_31435001 chr3R_31435001 RAL-332 1927 chr3R 31486150 31486183 chr3R 31486230 31486264 6 78 7.0 9.0 8.0 0.7 114 chr3R 31486150 intergenic not near genes chr3R 31486207 intergenic not near genes chr3R 31486264 intergenic not near genes chr3R_6_31485001 chr3R_31485001 RAL-332 1928 chr3R 31600128 31600160 chr3R 31600209 31600242 11 79 7.5 9.0 8.2 1.2 114 chr3R 31600128 intron CycG - chr3R 31600185 intron CycG - chr3R 31600242 intron CycG - chr3R_11_31600001 chr3R_31600001 RAL-332 1929 chr3R 31606147 31606171 chr3R 31606309 31606332 6 157 17.5 17.0 17.2 0.3 185 chr3R 31606147 intron CycG - chr3R 31606240 intron CycG - chr3R 31606332 intron CycG - chr3R_6_31605001 chr3R_31605001 RAL-332 1930 chr3R 31627690 31627713 chr3R 31627758 31627776 10 72 9.0 11.0 10.0 0.9 86 chr3R 31627690 intron kek6 + chr3R 31627733 intron kek6 + chr3R 31627776 intron kek6 + chr3R_10_31625001 chr3R_31625001 RAL-332 1931 chr3R 31691531 31691560 chr3R 31696297 31696326 Doc 22 4758 7.0 8.5 7.8 2.5 4795 chr3R 31691531 intergenic not near genes chr3R 31693928 intergenic not near genes chr3R 31696326 intergenic not near genes chr3R_22_31690001 chr3R_31690001 RAL-332 1932 chr3R 31758339 31758357 chr3R 31758654 31758683 8 320 7.5 3.5 5.5 1.2 344 chr3R 31758339 5` UTR CG2187 - chr3R 31758511 5` UTR CG2187 - chr3R 31758683 intergenic CR44263 +,CG2187 - chr3R_8_31755001 chr3R_31755001 RAL-332 1933 chr3R 31808612 31808643 chr3R 31808688 31808715 8 75 6.0 3.5 4.8 1.4 103 chr3R 31808612 intron CG11576 - chr3R 31808664 intron CG11576 - chr3R 31808715 intron CG11576 - chr3R_8_31805001 chr3R_31805001 RAL-332 1934 chr3R 31819337 31819347 chr3R 31819432 31819448 8 108 11.0 8.5 9.8 0.7 111 chr3R 31819337 intron RhoGAP100F + chr3R 31819392 intron RhoGAP100F + chr3R 31819448 intron RhoGAP100F + chr3R_8_31815001 chr3R_31815001 RAL-332 1935 chr3R 31827272 31827296 chr3R 31827346 31827375 12 76 10.0 7.5 8.8 1.2 103 chr3R 31827272 intron RhoGAP100F + chr3R 31827324 intron RhoGAP100F + chr3R 31827375 intron RhoGAP100F + chr3R_12_31825001 chr3R_31825001 RAL-332 1936 chr3R 31911679 31911791 chr3R 31911765 31911862 13 83 8.5 4.0 6.2 1.8 183 chr3R 31911679 intron heph - chr3R 31911770 intron heph - chr3R 31911862 intron heph - chr3R_13_31910001 chr3R_31910001 RAL-332 1937 chr3R 31929451 31929486 chr3R 31930675 31930710 13 1226 24.5 46.0 35.2 0.4 1259 chr3R 31929451 intron heph - chr3R 31930080 intron heph - chr3R 31930710 intron heph - chr3R_13_31930001 chr3R_31930001 RAL-332 1938 chr3R 31946024 31946055 chr3R 31946113 31946127 9 86 6.5 8.0 7.2 1.1 103 chr3R 31946024 intron heph - chr3R 31946076 intron heph - chr3R 31946127 intron heph - chr3R_9_31945001 chr3R_31945001 RAL-332 1939 chr3R 31954424 31954457 chr3R 31954510 31954544 10 78 13.5 12.5 13.0 0.7 120 chr3R 31954424 intron heph - chr3R 31954484 intron heph - chr3R 31954544 intron heph - chr3R_10_31950001 chr3R_31950001 RAL-332 1940 chr3R 31961342 31961367 chr3R 31961423 31961431 6 75 12.0 10.5 11.2 0.5 89 chr3R 31961342 intron heph - chr3R 31961386 intron heph - chr3R 31961431 intron heph - chr3R_6_31960001 chr3R_31960001 RAL-332 1941 chr3R 31997994 31998025 chr3R 32005460 32005495 blood 10 7465 4.5 5.5 5.0 1.7 7501 chr3R 31997994 intron heph - chr3R 32001744 intron heph - chr3R 32005495 intron heph - chr3R_10_32000001 chr3R_32000001 RAL-332 1942 chr4 76493 76514 chr4 81935 81956 I-element 4 5442 5.5 1.0 3.2 1.0 5463 chr4 76493 intron pan + chr4 79224 intron pan + chr4 81956 intron pan + chr4_4_75001 chr4_75001 RAL-332 1943 chr4 369178 369182 chr4 373592 373604 4 4418 18.5 9.0 13.8 0.3 4426 chr4 369178 intron Hcf + chr4 371391 intron Hcf + chr4 373604 3` UTR Hcf + chr4_4_370001 chr4_370001 RAL-332 1944 chr4 662185 662201 chr4 662830 662846 INE-1 4 645 0.0 0.5 0.2 3.3 661 chr4 662185 intron gw - chr4 662516 intron gw - chr4 662846 5` UTR gw - chr4_4_660001 chr4_660001 RAL-332 1945 chr4 671624 671636 chr4 680188 680219 Tirant 10 8578 8.0 6.5 7.2 1.2 8595 chr4 671624 intron CG11360 + chr4 675922 intron CG11360 + chr4 680219 intron CG11360 + chr4_10_675001 chr4_675001 RAL-332 1946 chrX 295875 295882 chrX 303481 303502 412 4 7614 2.0 4.0 3.0 1.0 7627 chrX 295875 intron CG3777 + chrX 299688 intron CG3777 + chrX 303502 intron CG3777 + chrX_4_295001 chrX_295001 RAL-332 1947 chrX 428416 428451 chrX 434601 434636 3S18 6 6181 7.0 1.0 4.0 1.2 6220 chrX 428416 intron CG32816 - chrX 431526 intron CG32816 - chrX 434636 intron CG32816 - chrX_6_430001 chrX_430001 RAL-332 1948 chrX 449896 449922 chrX 449993 450018 11 95 1.5 1.5 1.5 4.4 122 chrX 449896 intron CG32816 - chrX 449957 intron CG32816 - chrX 450018 intron CG32816 - chrX_11_445001 chrX_445001 RAL-332 1949 chrX 548582 548603 chrX 549524 549557 19 946 46.5 32.5 39.5 0.5 975 chrX 548582 intron Appl + chrX 549070 intron Appl + chrX 549557 intron Appl + chrX_19_545001 chrX_545001 RAL-332 1950 chrX 551436 551453 chrX 558982 559013 412 12 7554 5.0 3.0 4.0 2.4 7577 chrX 551436 intron Appl + chrX 555224 intron Appl + chrX 559013 intron Appl + chrX_12_555001 chrX_555001 RAL-332 1951 chrX 569362 569376 chrX 569457 569475 6 102 1.0 6.5 3.8 1.2 113 chrX 569362 intron Appl + chrX 569418 intron Appl + chrX 569475 intron Appl + chrX_6_565001 chrX_565001 RAL-332 1952 chrX 611140 611167 chrX 611224 611257 11 84 4.5 3.0 3.8 2.3 117 chrX 611140 intron CG13366 - chrX 611198 intron CG13366 - chrX 611257 intron CG13366 - chrX_11_610001 chrX_610001 RAL-332 1953 chrX 667659 667675 chrX 667732 667754 5 78 3.5 1.0 2.2 1.6 95 chrX 667659 intergenic not near genes chrX 667706 intergenic not near genes chrX 667754 intergenic not near genes chrX_5_665001 chrX_665001 RAL-332 1954 chrX 670268 670293 chrX 670347 670367 7 78 1.0 3.0 2.0 2.3 99 chrX 670268 intergenic not near genes chrX 670318 intergenic not near genes chrX 670367 intergenic not near genes chrX_7_670001 chrX_670001 RAL-332 1955 chrX 680838 680867 chrX 680920 680950 8 81 4.5 4.0 4.2 1.5 112 chrX 680838 intergenic not near genes chrX 680894 intergenic not near genes chrX 680950 intergenic not near genes chrX_8_680001 chrX_680001 RAL-332 1956 chrX 695293 695325 chrX 695370 695373 15 67 6.0 5.5 5.8 2.2 80 chrX 695293 intron sdk + chrX 695333 intron sdk + chrX 695373 intron sdk + chrX_15_695001 chrX_695001 RAL-332 1957 chrX 778127 778160 chrX 778215 778250 17 83 9.0 2.5 5.8 2.5 123 chrX 778127 intron fz3 + chrX 778188 intron fz3 + chrX 778250 intron fz3 + chrX_17_775001 chrX_775001 RAL-332 1958 chrX 780594 780603 chrX 780670 780679 4 76 8.0 0.0 4.0 0.8 85 chrX 780594 intron fz3 + chrX 780636 intron fz3 + chrX 780679 intron fz3 + chrX_4_780001 chrX_780001 RAL-332 1959 chrX 827605 827634 chrX 835397 835420 roo 5 7788 5.5 0.5 3.0 1.2 7815 chrX 827605 intron CG43867 - chrX 831512 intron CG43867 - chrX 835420 intron CG43867 - chrX_5_830001 chrX_830001 RAL-332 1960 chrX 868493 868516 chrX 868570 868577 11 72 3.5 9.5 6.5 1.5 84 chrX 868493 intron CG43867 - chrX 868535 intron CG43867 - chrX 868577 intron CG43867 - chrX_11_865001 chrX_865001 RAL-332 1961 chrX 882237 882266 chrX 882324 882353 13 85 4.0 8.0 6.0 1.9 116 chrX 882237 intron CG43867 - chrX 882295 intron CG43867 - chrX 882353 intron CG43867 - chrX_13_880001 chrX_880001 RAL-332 1962 chrX 906703 906730 chrX 908491 908518 S-element 15 1785 4.5 7.5 6.0 2.1 1815 chrX 906703 intron CG43867 - chrX 907610 intron CG43867 - chrX 908518 intron CG43867 - chrX_15_905001 chrX_905001 RAL-332 1963 chrX 1053117 1053120 chrX 16983076 16983077 9 15929958 17.0 17.0 17.0 0.5 15929960 chrX 1053117 intron CR44779 + chrX 9018097 intron,intron rdgA +,CR43836 - chrX 16983077 intron CG45002 - chrX_9_9015001 chrX_9015001 RAL-332 1964 chrX 1087095 1087101 chrX 1087168 1087174 5 81 1.0 7.0 4.0 1.0 79 chrX 1087095 5` UTR,intron CR44779 +,CG3655 - chrX 1087134 5` UTR,intron CR44779 +,CG3655 - chrX 1087174 5` UTR,intron CR44779 +,CG3655 - chrX_5_1085001 chrX_1085001 RAL-332 1965 chrX 1357785 1357807 chrX 1367942 1367968 Doc 9 10162 1.5 3.0 2.2 2.8 10183 chrX 1357785 intergenic png - chrX 1362876 intergenic not near genes chrX 1367968 intergenic not near genes chrX_9_1360001 chrX_1360001 RAL-332 1966 chrX 1428591 1428624 chrX 1428677 1428710 15 83 4.5 3.0 3.8 3.1 119 chrX 1428591 intron futsch + chrX 1428650 intron futsch + chrX 1428710 intron futsch + chrX_15_1425001 chrX_1425001 RAL-332 1967 chrX 1518038 1518076 chrX 1523440 1523477 jockey 9 5399 3.0 7.0 5.0 1.5 5439 chrX 1518038 intergenic inc + chrX 1520758 intergenic not near genes chrX 1523477 intergenic not near genes chrX_9_1520001 chrX_1520001 RAL-332 1968 chrX 1627973 1628003 chrX 1635440 1635469 gtwin 9 7464 6.5 3.5 5.0 1.5 7496 chrX 1627973 intron,intron Mur2B -,br + chrX 1631721 intron,intron Mur2B -,br + chrX 1635469 intron,intron Mur2B -,br + chrX_9_1630001 chrX_1630001 RAL-332 1969 chrX 1954886 1954915 chrX 1962826 1962837 Stalker2 7 7933 6.5 3.0 4.8 1.2 7951 chrX 1954886 intron Hr4 + chrX 1958862 intron Hr4 + chrX 1962837 intron Hr4 + chrX_7_1955001 chrX_1955001 RAL-332 1970 chrX 2014056 2014086 chrX 2014138 2014166 10 84 8.0 9.5 8.8 1.0 110 chrX 2014056 intron east + chrX 2014111 intron east + chrX 2014166 intron east + chrX_10_2010001 chrX_2010001 RAL-332 1971 chrX 2023959 2023987 chrX 2024077 2024110 6 118 10.5 8.5 9.5 0.6 151 chrX 2023959 3` UTR,3` UTR east +,Actn - chrX 2024034 3` UTR,3` UTR east +,Actn - chrX 2024110 3` UTR,3` UTR east +,Actn - chrX_6_2020001 chrX_2020001 RAL-332 1972 chrX 2020863 2020878 chrX 2025611 2025617 8 4736 36.0 17.0 26.5 0.3 4754 chrX 2020863 exon east + chrX 2023240 3` UTR east + chrX 2025617 exon Actn - chrX_8_2020001 chrX_2020001 RAL-332 1973 chrX 2095940 2095943 chrX 2096015 2096019 4 75 6.5 1.5 4.0 0.8 79 chrX 2095940 intron csw + chrX 2095980 intron csw + chrX 2096019 intron csw + chrX_4_2095001 chrX_2095001 RAL-332 1974 chrX 2146677 2146688 chrX 2146764 2146781 4 89 1.5 9.5 5.5 0.6 104 chrX 2146677 intron Pgd + chrX 2146729 intron Pgd + chrX 2146781 intron Pgd + chrX_4_2145001 chrX_2145001 RAL-332 1975 chrX 2353520 2353553 chrX 2353605 2353638 17 79 3.0 7.5 5.2 2.7 118 chrX 2353520 intron ptr - chrX 2353579 intron ptr - chrX 2353638 intron ptr - chrX_17_2350001 chrX_2350001 RAL-332 1976 chrX 2399854 2399870 chrX 2408190 2408198 roo 11 8346 5.5 6.5 6.0 1.6 8344 chrX 2399854 intergenic not near genes chrX 2404026 intergenic not near genes chrX 2408198 intergenic not near genes chrX_11_2400001 chrX_2400001 RAL-332 1977 chrX 2578818 2578843 chrX 2578922 2578934 7 98 3.0 5.0 4.0 1.4 116 chrX 2578818 intergenic Pdfr +,Vha36-3 - chrX 2578876 intergenic Vha36-3 -,Pdfr + chrX 2578934 intergenic Vha36-3 -,Pdfr + chrX_7_2575001 chrX_2575001 RAL-332 1978 chrX 2664400 2664411 chrX 2665529 2665552 1360 4 1140 0.5 3.0 1.8 1.4 1152 chrX 2664400 intron sgg + chrX 2664976 intron sgg + chrX 2665552 intron sgg + chrX_4_2660001 chrX_2660001 RAL-332 1979 chrX 2803503 2803526 chrX 2803640 2803655 8 138 4.0 3.0 3.5 1.8 152 chrX 2803503 intron kirre + chrX 2803579 intron kirre + chrX 2803655 intron kirre + chrX_8_2800001 chrX_2800001 RAL-332 1980 chrX 2844907 2844921 chrX 2852308 2852331 mdg1 4 7408 2.0 1.0 1.5 1.6 7424 chrX 2844907 intron kirre + chrX 2848619 intron kirre + chrX 2852331 intron kirre + chrX_4_2845001 chrX_2845001 RAL-332 1981 chrX 2859571 2859577 chrX 2859647 2859652 4 77 6.5 1.0 3.8 0.8 81 chrX 2859571 intron kirre + chrX 2859612 intron kirre + chrX 2859652 intron kirre + chrX_4_2855001 chrX_2855001 RAL-332 1982 chrX 2888119 2888147 chrX 2888190 2888215 13 73 3.5 4.0 3.8 2.7 96 chrX 2888119 intron kirre + chrX 2888167 intron kirre + chrX 2888215 intron kirre + chrX_13_2885001 chrX_2885001 RAL-332 1983 chrX 2893727 2893748 chrX 2894821 2894845 11 1098 38.5 29.5 34.0 0.3 1118 chrX 2893727 intron,exon kirre +,CG3526 + chrX 2894286 intron kirre + chrX 2894845 intron kirre + chrX_11_2890001 chrX_2890001 RAL-332 1984 chrX 3058028 3058052 chrX 3058269 3058277 pogo 5 235 2.5 2.5 2.5 1.4 249 chrX 3058028 intron kirre + chrX 3058152 intron kirre + chrX 3058277 intron kirre + chrX_5_3055001 chrX_3055001 RAL-332 1985 chrX 3075637 3075645 chrX 3080942 3080952 Transpac 4 5306 1.0 4.0 2.5 1.1 5315 chrX 3075637 intron kirre + chrX 3078294 intron kirre + chrX 3080952 intron kirre + chrX_4_3075001 chrX_3075001 RAL-332 1986 chrX 3082595 3082606 chrX 3082672 3082683 4 76 4.5 5.0 4.8 0.7 88 chrX 3082595 intron kirre + chrX 3082639 intron kirre + chrX 3082683 intron kirre + chrX_4_3080001 chrX_3080001 RAL-332 1987 chrX 3100736 3100756 chrX 3100967 3100977 8 230 7.0 2.5 4.8 1.4 241 chrX 3100736 intron kirre + chrX 3100856 intron kirre + chrX 3100977 intron kirre + chrX_8_3100001 chrX_3100001 RAL-332 1988 chrX 3109444 3109476 chrX 3109521 3109535 11 72 5.5 3.5 4.5 2.0 91 chrX 3109444 intron kirre + chrX 3109490 intron kirre + chrX 3109535 intron kirre + chrX_11_3105001 chrX_3105001 RAL-332 1989 chrX 3111083 3111085 chrX 3111163 3111164 4 80 5.5 0.0 2.8 1.1 81 chrX 3111083 intron kirre + chrX 3111124 intron kirre + chrX 3111164 intron kirre + chrX_4_3110001 chrX_3110001 RAL-332 1990 chrX 3306058 3306354 chrX 3306169 3306436 14 100 4.5 7.0 5.8 2.1 378 chrX 3306058 intron dnc + chrX 3306247 intron dnc + chrX 3306436 intron dnc + chrX_14_3305001 chrX_3305001 RAL-332 1991 chrX 3351804 3351813 chrX 3351890 3351899 5 86 10.0 14.0 12.0 0.4 95 chrX 3351804 intergenic not near genes chrX 3351852 intergenic not near genes chrX 3351899 intergenic not near genes chrX_5_3350001 chrX_3350001 RAL-332 1992 chrX 3415018 3415049 chrX 3421203 3421234 3S18 11 6181 0.5 1.5 1.0 5.5 6216 chrX 3415018 intron,intron CR44999 +,CG12535 - chrX 3418126 intron,intron CR44999 +,CG12535 - chrX 3421234 intron,intron CR44999 +,CG12535 - chrX_11_3415001 chrX_3415001 RAL-332 1993 chrX 3493093 3493125 chrX 3502251 3502284 roo 9 9154 4.5 4.0 4.2 1.7 9191 chrX 3493093 intron,intron CR44999 +,Gas8 - chrX 3497688 intron,intron CR44999 +,Gas8 - chrX 3502284 intron,intron CR44999 +,Gas8 - chrX_9_3495001 chrX_3495001 RAL-332 1994 chrX 3597109 3597131 chrX 3597197 3597219 6 86 1.0 1.5 1.2 2.7 110 chrX 3597109 intron AstA-R1 + chrX 3597164 intron AstA-R1 + chrX 3597219 intron AstA-R1 + chrX_6_3595001 chrX_3595001 RAL-332 1995 chrX 3597548 3597584 chrX 3619716 3619751 roo 13 22166 4.5 2.5 3.5 2.9 22203 chrX 3597548 intron AstA-R1 + chrX 3608650 intron AstA-R1 + chrX 3619751 intron AstA-R1 + chrX_13_3605001 chrX_3605001 RAL-332 1996 chrX 3726773 3726792 chrX 3730156 3730181 NOF 6 3388 1.5 2.0 1.8 2.1 3408 chrX 3726773 intron tlk + chrX 3728477 intron tlk + chrX 3730181 intron tlk + chrX_6_3725001 chrX_3725001 RAL-332 1997 chrX 3863221 3863223 chrX 3863302 3863306 4 82 9.0 4.5 6.8 0.5 85 chrX 3863221 exon yin - chrX 3863264 exon yin - chrX 3863306 exon yin - chrX_4_3860001 chrX_3860001 RAL-332 1998 chrX 3863225 3863252 chrX 3863301 3863334 11 79 4.0 4.5 4.2 2.1 109 chrX 3863225 exon yin - chrX 3863280 exon yin - chrX 3863334 exon yin - chrX_11_3860001 chrX_3860001 RAL-332 1999 chrX 3866111 3866133 chrX 3866187 3866192 7 72 2.5 5.5 4.0 1.4 81 chrX 3866111 intron yin - chrX 3866152 intron yin - chrX 3866192 intron yin - chrX_7_3865001 chrX_3865001 RAL-332 2000 chrX 3986878 3986895 chrX 3994499 3994526 412 5 7627 2.0 0.0 1.0 2.5 7648 chrX 3986878 intergenic not near genes chrX 3990702 intergenic not near genes chrX 3994526 intergenic not near genes chrX_5_3990001 chrX_3990001 RAL-332 2001 chrX 4048514 4048522 chrX 4048575 4048598 5 69 6.5 4.5 5.5 0.8 84 chrX 4048514 3` UTR CR45482 - chrX 4048556 3` UTR CR45482 - chrX 4048598 3` UTR CR45482 - chrX_5_4045001 chrX_4045001 RAL-332 2002 chrX 4067987 4067988 chrX 10754861 10754861 5 6686873 18.0 36.0 27.0 0.2 6686874 chrX 4067987 intergenic not near genes chrX 7411424 3` UTR CG42246 - chrX 10754861 intron Rph - chrX_5_7410001 chrX_7410001 RAL-332 2003 chrX 4101891 4101899 chrX 4101955 4101967 8 73 4.0 9.5 6.8 1.0 76 chrX 4101891 exon CG15375 + chrX 4101929 exon CG15375 + chrX 4101967 exon CG15375 + chrX_8_4100001 chrX_4100001 RAL-332 2004 chrX 4157903 4157924 chrX 4164932 4164958 297 6 7031 4.5 3.0 3.8 1.2 7055 chrX 4157903 intron Fas2 - chrX 4161430 intron Fas2 - chrX 4164958 intron Fas2 - chrX_6_4160001 chrX_4160001 RAL-332 2005 chrX 4203526 4203547 chrX 4203594 4203623 5 74 3.0 5.0 4.0 1.0 97 chrX 4203526 intron Fas2 - chrX 4203574 intron Fas2 - chrX 4203623 intron Fas2 - chrX_5_4200001 chrX_4200001 RAL-332 2006 chrX 4230614 4230616 chrX 4230807 4230809 4 200 0.0 5.5 2.8 1.1 195 chrX 4230614 intergenic not near genes chrX 4230712 intergenic not near genes chrX 4230809 intergenic not near genes chrX_4_4230001 chrX_4230001 RAL-332 2007 chrX 4299218 4299251 chrX 4299305 4299340 14 85 2.5 5.0 3.8 2.9 122 chrX 4299218 intergenic not near genes chrX 4299279 intergenic not near genes chrX 4299340 intergenic not near genes chrX_14_4295001 chrX_4295001 RAL-332 2008 chrX 4310133 4310166 chrX 4310280 4310300 12 146 1.5 3.5 2.5 3.4 167 chrX 4310133 intergenic not near genes chrX 4310216 intergenic not near genes chrX 4310300 intergenic not near genes chrX_12_4310001 chrX_4310001 RAL-332 2009 chrX 4324730 4324750 chrX 4324807 4324826 4 72 5.0 4.0 4.5 0.7 96 chrX 4324730 intron norpA + chrX 4324778 intron norpA + chrX 4324826 intron norpA + chrX_4_4320001 chrX_4320001 RAL-332 2010 chrX 4515834 4515858 chrX 4515912 4515936 9 77 0.0 2.0 1.0 4.5 102 chrX 4515834 intron CR32773 - chrX 4515885 intron CR32773 - chrX 4515936 intron CR32773 - chrX_9_4515001 chrX_4515001 RAL-332 2011 chrX 4717353 4717376 chrX 4717874 4717892 9 519 2.0 3.0 2.5 2.6 539 chrX 4717353 intron Proc-R + chrX 4717622 intron Proc-R + chrX 4717892 intron Proc-R + chrX_9_4715001 chrX_4715001 RAL-332 2012 chrX 4717377 4717386 chrX 4717873 4717906 7 509 1.5 3.0 2.2 2.2 529 chrX 4717377 intron Proc-R + chrX 4717642 intron Proc-R + chrX 4717906 intron Proc-R + chrX_7_4715001 chrX_4715001 RAL-332 2013 chrX 4731814 4731837 chrX 4736907 4736908 jockey 9 5088 11.0 9.5 10.2 0.8 5094 chrX 4731814 intergenic not near genes chrX 4734361 intergenic not near genes chrX 4736908 intergenic not near genes chrX_9_4730001 chrX_4730001 RAL-332 2014 chrX 4763264 4763279 chrX 4763737 4763759 Stalker4 7 480 3.5 2.0 2.8 1.8 495 chrX 4763264 intergenic not near genes chrX 4763512 intergenic not near genes chrX 4763759 intergenic not near genes chrX_7_4760001 chrX_4760001 RAL-332 2015 chrX 4792383 4792392 chrX 4792814 4792825 jockey 4 432 7.5 10.0 8.8 0.4 442 chrX 4792383 intergenic not near genes chrX 4792604 intergenic not near genes chrX 4792825 intergenic not near genes chrX_4_4790001 chrX_4790001 RAL-332 2016 chrX 4792393 4792411 chrX 4792812 4792826 jockey 6 421 3.0 10.0 6.5 0.8 433 chrX 4792393 intergenic not near genes chrX 4792610 intergenic not near genes chrX 4792826 intergenic not near genes chrX_6_4790001 chrX_4790001 RAL-332 2017 chrX 1562990 1562991 chrX 4805476 4805476 opus 4 3242485 22.5 16.0 19.2 0.2 3242486 chrX 1562990 intron Mur2B - chrX 3184233 intron dnc + chrX 4805476 3` UTR CR45516 - chrX_4_3180001 chrX_3180001 RAL-332 2018 chrX 4827967 4828002 chrX 4835338 4835373 Stalker4 13 7360 8.5 5.0 6.8 1.7 7406 chrX 4827967 intergenic not near genes chrX 4831670 intergenic not near genes chrX 4835373 intergenic not near genes chrX_13_4830001 chrX_4830001 RAL-332 2019 chrX 5002080 5002094 chrX 5002165 5002177 5 82 0.0 1.5 0.8 2.8 97 chrX 5002080 intron CR44833 - chrX 5002128 intron CR44833 - chrX 5002177 intron CR44833 - chrX_5_5000001 chrX_5000001 RAL-332 2020 chrX 5096279 5096306 chrX 5103839 5103871 springer 4 7557 1.5 7.0 4.2 0.8 7592 chrX 5096279 intron,intron CG15465 +,rg + chrX 5100075 intron,intron CG15465 +,rg + chrX 5103871 intron,intron CG15465 +,rg + chrX_4_5100001 chrX_5100001 RAL-332 2021 chrX 5220393 5220421 chrX 5220632 5220652 16 235 0.0 4.5 2.2 5.0 259 chrX 5220393 intron,intron CG15465 +,rg + chrX 5220522 intron,intron CG15465 +,rg + chrX 5220652 intron,intron CG15465 +,rg + chrX_16_5220001 chrX_5220001 RAL-332 2022 chrX 5223711 5223726 chrX 5223789 5223804 6 77 3.5 5.0 4.2 1.2 93 chrX 5223711 intron,intron CG15465 +,rg + chrX 5223758 intron,intron CG15465 +,rg + chrX 5223804 intron,intron CG15465 +,rg + chrX_6_5220001 chrX_5220001 RAL-332 2023 chrX 5338721 5338727 chrX 5339973 5339977 jockey 4 1252 3.0 9.5 6.2 0.6 1256 chrX 5338721 intergenic not near genes chrX 5339349 intergenic not near genes chrX 5339977 intergenic SK + chrX_4_5335001 chrX_5335001 RAL-332 2024 chrX 5349277 5349304 chrX 5349354 5349381 5 71 1.0 2.0 1.5 2.0 104 chrX 5349277 intron SK + chrX 5349329 intron SK + chrX 5349381 intron SK + chrX_5_5345001 chrX_5345001 RAL-332 2025 chrX 5555376 5555395 chrX 5555498 5555503 9 118 3.0 4.5 3.8 1.9 127 chrX 5555376 intron Vsx2 - chrX 5555440 intron Vsx2 - chrX 5555503 intron Vsx2 - chrX_9_5555001 chrX_5555001 RAL-332 2026 chrX 5798868 5798889 chrX 5799026 5799050 6 159 1.0 6.0 3.5 1.3 182 chrX 5798868 intergenic not near genes chrX 5798959 intergenic not near genes chrX 5799050 intergenic not near genes chrX_6_5795001 chrX_5795001 RAL-332 2027 chrX 5884170 5884187 chrX 5884411 5884428 pogo 5 240 6.0 3.5 4.8 0.9 258 chrX 5884170 intron CR45668 - chrX 5884299 intron CR45668 - chrX 5884428 intron CR45668 - chrX_5_5880001 chrX_5880001 RAL-332 2028 chrX 6164300 6164326 chrX 6164386 6164412 7 82 3.0 2.5 2.8 1.8 112 chrX 6164300 intron Ca-alpha1T - chrX 6164356 intron Ca-alpha1T - chrX 6164412 intron Ca-alpha1T - chrX_7_6160001 chrX_6160001 RAL-332 2029 chrX 6171584 6171601 chrX 6179017 6179033 Quasimodo 4 7432 7.5 2.5 5.0 0.7 7449 chrX 6171584 intron Ca-alpha1T - chrX 6175308 intron Ca-alpha1T - chrX 6179033 intron Ca-alpha1T - chrX_4_6175001 chrX_6175001 RAL-332 2030 chrX 6171602 6171610 chrX 6179015 6179043 Quasimodo 4 7420 6.0 2.0 4.0 0.8 7441 chrX 6171602 intron Ca-alpha1T - chrX 6175322 intron Ca-alpha1T - chrX 6179043 intron Ca-alpha1T - chrX_4_6175001 chrX_6175001 RAL-332 2031 chrX 6335222 6335244 chrX 6337722 6337754 Tirant 9 2507 0.5 4.0 2.2 2.8 2532 chrX 6335222 intergenic not near genes chrX 6336488 intergenic not near genes chrX 6337754 intergenic CG3842 + chrX_9_6335001 chrX_6335001 RAL-332 2032 chrX 6392884 6392904 chrX 6397639 6397650 Doc 11 4757 5.5 6.0 5.8 1.6 4766 chrX 6392884 intergenic not near genes chrX 6395267 intergenic not near genes chrX 6397650 intergenic not near genes chrX_11_6395001 chrX_6395001 RAL-332 2033 chrX 6562821 6562848 chrX 6571298 6571307 Tirant 7 8474 3.0 0.0 1.5 2.8 8486 chrX 6562821 intron CG34417 + chrX 6567064 intron CG34417 + chrX 6571307 intron CG34417 + chrX_7_6565001 chrX_6565001 RAL-332 2034 chrX 6897594 6897711 chrX 6897651 6897819 13 100 2.5 2.5 2.5 3.7 225 chrX 6897594 intergenic not near genes chrX 6897706 intergenic not near genes chrX 6897819 intergenic not near genes chrX_13_6895001 chrX_6895001 RAL-332 2035 chrX 6941540 6941575 chrX 6941634 6941669 7 93 2.0 4.5 3.2 1.7 129 chrX 6941540 intron CG14431 + chrX 6941604 intron CG14431 + chrX 6941669 intron CG14431 + chrX_7_6940001 chrX_6940001 RAL-332 2036 chrX 6984630 6984646 chrX 6984699 6984715 4 70 0.0 0.0 0.0 4.0 85 chrX 6984630 intron ogre - chrX 6984672 intron ogre - chrX 6984715 intron ogre - chrX_4_6980001 chrX_6980001 RAL-332 2037 chrX 6989501 6989533 chrX 6989588 6989620 7 87 1.5 2.0 1.8 2.5 119 chrX 6989501 intron ogre - chrX 6989560 intron ogre - chrX 6989620 intron ogre - chrX_7_6985001 chrX_6985001 RAL-332 2038 chrX 7023600 7023634 chrX 7030989 7031021 Tabor 15 7386 7.0 7.5 7.2 1.8 7421 chrX 7023600 intron CG12541 - chrX 7027310 intron CG12541 - chrX 7031021 intron CG12541 - chrX_15_7025001 chrX_7025001 RAL-332 2039 chrX 7047500 7047516 chrX 7047573 7047605 4 85 1.0 5.0 3.0 1.0 105 chrX 7047500 intron CG12541 - chrX 7047552 intron CG12541 - chrX 7047605 intron CG12541 - chrX_4_7045001 chrX_7045001 RAL-332 2040 chrX 7125249 7125271 chrX 7134405 7134430 roo 13 9155 2.5 4.5 3.5 2.9 9181 chrX 7125249 intergenic not near genes chrX 7129840 intergenic not near genes chrX 7134430 intergenic not near genes chrX_13_7125001 chrX_7125001 RAL-332 2041 chrX 7516002 7516031 chrX 7516096 7516125 6 93 1.5 6.0 3.8 1.2 123 chrX 7516002 intron CG32719 - chrX 7516064 intron CG32719 - chrX 7516125 intron CG32719 - chrX_6_7515001 chrX_7515001 RAL-332 2042 chrX 7570643 7570668 chrX 7570769 7570802 6 131 1.0 2.0 1.5 2.4 159 chrX 7570643 intergenic not near genes chrX 7570722 intergenic not near genes chrX 7570802 intergenic not near genes chrX_6_7570001 chrX_7570001 RAL-332 2043 chrX 7702901 7702914 chrX 7703340 7703341 jockey 4 436 11.0 3.0 7.0 0.5 440 chrX 7702901 intron CHES-1-like - chrX 7703121 intron CHES-1-like - chrX 7703341 intron CHES-1-like - chrX_4_7700001 chrX_7700001 RAL-332 2044 chrX 7702916 7702929 chrX 7703339 7703368 jockey 6 435 8.5 3.0 5.8 0.9 452 chrX 7702916 intron CHES-1-like - chrX 7703142 intron CHES-1-like - chrX 7703368 intron CHES-1-like - chrX_6_7700001 chrX_7700001 RAL-332 2045 chrX 7784238 7784262 chrX 7784540 7784545 jockey 4 294 1.0 9.0 5.0 0.7 307 chrX 7784238 intergenic not near genes chrX 7784392 intergenic not near genes chrX 7784545 intergenic not near genes chrX_4_7780001 chrX_7780001 RAL-332 2046 chrX 7832447 7832465 chrX 7832534 7832536 5 84 1.5 4.0 2.8 1.3 89 chrX 7832447 intron CG1402 + chrX 7832492 intron CG1402 + chrX 7832536 intron CG1402 + chrX_5_7830001 chrX_7830001 RAL-332 2047 chrX 8085572 8085601 chrX 8085658 8085687 11 80 4.0 2.0 3.0 2.8 115 chrX 8085572 intron,5` UTR CG2256 -,CR45535 + chrX 8085630 intron,5` UTR CG2256 -,CR45535 + chrX 8085687 intron,5` UTR CG2256 -,CR45535 + chrX_11_8085001 chrX_8085001 RAL-332 2048 chrX 8092287 8092319 chrX 8092372 8092404 12 82 5.0 2.5 3.8 2.5 117 chrX 8092287 intron Ubc-E2H - chrX 8092346 intron Ubc-E2H - chrX 8092404 intron Ubc-E2H - chrX_12_8090001 chrX_8090001 RAL-332 2049 chrX 8355993 8356012 chrX 8356125 8356133 5 130 4.0 2.5 3.2 1.2 140 chrX 8355993 intron nAChRalpha3 - chrX 8356063 intron nAChRalpha3 - chrX 8356133 intron nAChRalpha3 - chrX_5_8355001 chrX_8355001 RAL-332 2050 chrX 8771250 8771262 chrX 8771328 8771339 5 78 4.0 1.5 2.8 1.3 89 chrX 8771250 intron Lim1 - chrX 8771294 intron Lim1 - chrX 8771339 intron Lim1 - chrX_5_8770001 chrX_8770001 RAL-332 2051 chrX 8922326 8922359 chrX 8922760 8922791 jockey 19 429 4.5 3.5 4.0 3.8 465 chrX 8922326 intron rdgA + chrX 8922558 intron rdgA + chrX 8922791 intron rdgA + chrX_19_8920001 chrX_8920001 RAL-332 2052 chrX 8948760 8948790 chrX 8956270 8956300 roo 9 7510 2.5 3.5 3.0 2.2 7540 chrX 8948760 intron rdgA + chrX 8952530 intron rdgA + chrX 8956300 intron rdgA + chrX_9_8950001 chrX_8950001 RAL-332 2053 chrX 9062710 9062728 chrX 9062815 9062833 6 105 0.5 1.0 0.8 3.3 123 chrX 9062710 intron CG15365 - chrX 9062772 intron CG15365 - chrX 9062833 intron CG15365 - chrX_6_9060001 chrX_9060001 RAL-332 2054 chrX 9152084 9152104 chrX 9152162 9152178 7 79 3.5 1.0 2.2 2.2 94 chrX 9152084 intergenic dalao +,His3.3B - chrX 9152131 intergenic dalao +,His3.3B - chrX 9152178 intergenic dalao +,His3.3B - chrX_7_9150001 chrX_9150001 RAL-332 2055 chrX 9229920 9229940 chrX 9229989 9230020 9 75 1.5 2.0 1.8 3.2 100 chrX 9229920 intron CG12121 - chrX 9229970 intron CG12121 - chrX 9230020 intron CG12121 - chrX_9_9225001 chrX_9225001 RAL-332 2056 chrX 9337940 9337970 chrX 9338032 9338061 14 88 3.0 3.5 3.2 3.3 121 chrX 9337940 intron CG34449 - chrX 9338000 intron CG34449 - chrX 9338061 exon CG34449 - chrX_14_9335001 chrX_9335001 RAL-332 2057 chrX 9508140 9508164 chrX 9509649 9509682 jockey 8 1514 3.0 6.0 4.5 1.5 1542 chrX 9508140 intron CG32700 - chrX 9508911 intron CG32700 - chrX 9509682 intron CG32700 - chrX_8_9505001 chrX_9505001 RAL-332 2058 chrX 9575811 9575824 chrX 9576113 9576125 mdg3 12 312 3.5 6.0 4.8 2.1 314 chrX 9575811 intron,exon CG32699 -,CG42395 - chrX 9575968 intron,intron CG32699 -,CG42395 - chrX 9576125 intron,exon CG32699 -,CG42395 - chrX_12_9575001 chrX_9575001 RAL-332 2059 chrX 9577566 9577600 chrX 9577645 9577680 6 77 1.0 2.5 1.8 2.1 114 chrX 9577566 intron CG32699 - chrX 9577623 intron CG32699 - chrX 9577680 intron CG32699 - chrX_6_9575001 chrX_9575001 RAL-332 2060 chrX 9599175 9599202 chrX 9599250 9599280 16 77 5.5 3.5 4.5 2.9 105 chrX 9599175 intergenic not near genes chrX 9599228 intergenic not near genes chrX 9599280 intergenic not near genes chrX_16_9595001 chrX_9595001 RAL-332 2061 chrX 9617005 9617019 chrX 9617084 9617093 4 77 3.5 0.0 1.8 1.4 88 chrX 9617005 intron CG42797 + chrX 9617049 intron CG42797 + chrX 9617093 intron CG42797 + chrX_4_9615001 chrX_9615001 RAL-332 2062 chrX 9632038 9632072 chrX 9632208 9632242 4 164 2.0 0.0 1.0 2.0 204 chrX 9632038 intron l(1)G0232 - chrX 9632140 intron l(1)G0232 - chrX 9632242 intron l(1)G0232 - chrX_4_9630001 chrX_9630001 RAL-332 2063 chrX 9783049 9783253 chrX 9783129 9783295 15 66 5.0 5.5 5.2 2.4 246 chrX 9783049 intergenic CG32698 + chrX 9783172 intergenic CG32698 + chrX 9783295 5` UTR CG32698 + chrX_15_9780001 chrX_9780001 RAL-332 2064 chrX 9791868 9791889 chrX 9791965 9791970 5 92 2.5 6.5 4.5 0.9 102 chrX 9791868 intron CG32698 + chrX 9791919 intron CG32698 + chrX 9791970 intron CG32698 + chrX_5_9790001 chrX_9790001 RAL-332 2065 chrX 8382093 8382094 chrX 9845361 9845361 6 1463267 27.5 26.0 26.8 0.2 1463268 chrX 8382093 intergenic not near genes chrX 9113727 exon AP-1gamma + chrX 9845361 intron CG32698 + chrX_6_9110001 chrX_9110001 RAL-332 2066 chrX 10295261 10295284 chrX 10295660 10295683 10 399 2.5 3.0 2.8 2.6 422 chrX 10295261 intron alpha-Man-I - chrX 10295472 intron alpha-Man-I - chrX 10295683 intron alpha-Man-I - chrX_10_10295001 chrX_10295001 RAL-332 2067 chrX 10446684 10446714 chrX 10446766 10446779 9 78 2.0 1.5 1.8 3.2 95 chrX 10446684 intron CG32683 - chrX 10446732 intron CG32683 - chrX 10446779 intron CG32683 - chrX_9_10445001 chrX_10445001 RAL-332 2068 chrX 10550856 10550877 chrX 10552323 10552334 hobo 8 1464 5.0 3.5 4.2 1.5 1478 chrX 10550856 intron spri - chrX 10551595 intron spri - chrX 10552334 intron spri - chrX_8_10550001 chrX_10550001 RAL-332 2069 chrX 10668918 10668952 chrX 10668998 10669034 13 78 2.5 5.5 4.0 2.6 116 chrX 10668918 intron X11Lbeta + chrX 10668976 intron X11Lbeta + chrX 10669034 intron X11Lbeta + chrX_13_10665001 chrX_10665001 RAL-332 2070 chrX 10677236 10677254 chrX 10677300 10677333 5 72 1.5 3.0 2.2 1.6 97 chrX 10677236 intron X11Lbeta + chrX 10677284 intron X11Lbeta + chrX 10677333 intron X11Lbeta + chrX_5_10675001 chrX_10675001 RAL-332 2071 chrX 10680707 10680727 chrX 10680991 10681011 5 282 3.5 3.5 3.5 1.1 304 chrX 10680707 intron X11Lbeta + chrX 10680859 intron X11Lbeta + chrX 10681011 intron X11Lbeta + chrX_5_10680001 chrX_10680001 RAL-332 2072 chrX 10686061 10686075 chrX 10691186 10691212 roo 4 5132 2.5 4.0 3.2 1.0 5151 chrX 10686061 intron X11Lbeta + chrX 10688636 intron X11Lbeta + chrX 10691212 intron X11Lbeta + chrX_4_10685001 chrX_10685001 RAL-332 2073 chrX 10694164 10694178 chrX 10694244 10694258 5 78 6.5 7.0 6.8 0.6 94 chrX 10694164 intron X11Lbeta + chrX 10694211 intron X11Lbeta + chrX 10694258 intron X11Lbeta + chrX_5_10690001 chrX_10690001 RAL-332 2074 chrX 10694181 10694185 chrX 10694238 10694251 6 69 5.5 6.0 5.8 0.9 70 chrX 10694181 intron X11Lbeta + chrX 10694216 intron X11Lbeta + chrX 10694251 intron X11Lbeta + chrX_6_10690001 chrX_10690001 RAL-332 2075 chrX 10719135 10719142 chrX 10719214 10719226 4 82 0.0 4.0 2.0 1.3 91 chrX 10719135 intron CG32676 - chrX 10719180 intron CG32676 - chrX 10719226 intron CG32676 - chrX_4_10715001 chrX_10715001 RAL-332 2076 chrX 11017411 11017442 chrX 11017493 11017523 9 77 1.5 2.0 1.8 3.2 112 chrX 11017411 intron CG42339 - chrX 11017467 intron CG42339 - chrX 11017523 intron CG42339 - chrX_9_11015001 chrX_11015001 RAL-332 2077 chrX 11026438 11026468 chrX 11026715 11026716 4 260 1.5 0.0 0.8 2.2 278 chrX 11026438 intron CG42339 - chrX 11026577 intron CG42339 - chrX 11026716 intron CG42339 - chrX_4_11025001 chrX_11025001 RAL-332 2078 chrX 11051460 11051491 chrX 11051541 11051572 8 73 0.5 7.5 4.0 1.6 112 chrX 11051460 intergenic not near genes chrX 11051516 intergenic not near genes chrX 11051572 intergenic not near genes chrX_8_11050001 chrX_11050001 RAL-332 2079 chrX 11062456 11062478 chrX 11062542 11062567 8 90 0.5 3.0 1.8 2.9 111 chrX 11062456 exon CG1537 - chrX 11062512 intron CG1537 - chrX 11062567 intron CG1537 - chrX_8_11060001 chrX_11060001 RAL-332 2080 chrX 11069169 11069189 chrX 11069312 11069332 6 139 0.0 1.0 0.5 4.0 163 chrX 11069169 intergenic not near genes chrX 11069250 intergenic not near genes chrX 11069332 intergenic not near genes chrX_6_11065001 chrX_11065001 RAL-332 2081 chrX 11254181 11254189 chrX 11254278 11254300 7 105 8.5 4.0 6.2 1.0 119 chrX 11254181 intron CG44422 - chrX 11254240 intron CG44422 - chrX 11254300 intron CG44422 - chrX_7_11250001 chrX_11250001 RAL-332 2082 chrX 11312069 11312091 chrX 11319414 11319438 Stalker2 6 7341 0.5 5.0 2.8 1.6 7369 chrX 11312069 intergenic not near genes chrX 11315754 intergenic not near genes chrX 11319438 intergenic not near genes chrX_6_11315001 chrX_11315001 RAL-332 2083 chrX 11633424 11633443 chrX 11640470 11640479 297 8 7046 3.0 4.5 3.8 1.7 7055 chrX 11633424 intron Ptp10D + chrX 11636952 intron Ptp10D + chrX 11640479 intron Ptp10D + chrX_8_11635001 chrX_11635001 RAL-332 2084 chrX 11651206 11651226 chrX 11651285 11651315 5 88 2.0 1.5 1.8 1.8 109 chrX 11651206 intron Ptp10D + chrX 11651260 intron Ptp10D + chrX 11651315 intron Ptp10D + chrX_5_11650001 chrX_11650001 RAL-332 2085 chrX 11719548 11719576 chrX 11719654 11719669 4 103 1.0 2.0 1.5 1.6 121 chrX 11719548 3` UTR prtp + chrX 11719608 3` UTR prtp + chrX 11719669 3` UTR prtp + chrX_4_11715001 chrX_11715001 RAL-332 2086 chrX 12038087 12038116 chrX 12038281 12038290 22 188 5.0 4.5 4.8 3.8 203 chrX 12038087 intergenic not near genes chrX 12038188 intergenic not near genes chrX 12038290 intergenic not near genes chrX_22_12035001 chrX_12035001 RAL-332 2087 chrX 12094036 12094066 chrX 12094128 12094158 9 88 1.0 6.0 3.5 2.0 122 chrX 12094036 intron,intron CR43960 +,Ten-a + chrX 12094097 intron,intron CR43960 +,Ten-a + chrX 12094158 intron,intron CR43960 +,Ten-a + chrX_9_12090001 chrX_12090001 RAL-332 2088 chrX 12101194 12101213 chrX 12104821 12104854 15 3631 26.0 32.0 29.0 0.5 3660 chrX 12101194 intron,intron CR43960 +,Ten-a + chrX 12103024 intron,intron,exon CR43960 +,Ten-a +,CG11356 - chrX 12104854 intron,intron CR43960 +,Ten-a + chrX_15_12100001 chrX_12100001 RAL-332 2089 chrX 12136490 12136500 chrX 12136566 12136572 4 75 0.0 2.0 1.0 2.0 82 chrX 12136490 intron Ten-a + chrX 12136531 intron Ten-a + chrX 12136572 intron Ten-a + chrX_4_12135001 chrX_12135001 RAL-332 2090 chrX 12176741 12176769 chrX 12176816 12176845 15 74 4.0 7.0 5.5 2.3 104 chrX 12176741 intron,3` UTR Ten-a +,CG1924 - chrX 12176793 intron,3` UTR Ten-a +,CG1924 - chrX 12176845 intron,3` UTR Ten-a +,CG1924 - chrX_15_12175001 chrX_12175001 RAL-332 2091 chrX 12277181 12277215 chrX 12277271 12277291 12 87 5.5 3.5 4.5 2.2 110 chrX 12277181 intron Ten-a + chrX 12277236 intron Ten-a + chrX 12277291 intron Ten-a + chrX_12_12275001 chrX_12275001 RAL-332 2092 chrX 12533813 12533819 chrX 12533875 12533895 6 71 0.0 6.5 3.2 1.4 82 chrX 12533813 intron CG43921 - chrX 12533854 intron CG43921 - chrX 12533895 intron CG43921 - chrX_6_12530001 chrX_12530001 RAL-332 2093 chrX 12539615 12539636 chrX 12539728 12539752 7 116 5.0 2.5 3.8 1.5 137 chrX 12539615 intron CG43921 - chrX 12539684 intron CG43921 - chrX 12539752 intron CG43921 - chrX_7_12535001 chrX_12535001 RAL-332 2094 chrX 9845361 9845361 chrX 12546496 12546496 gypsy5 7 2701135 21.5 18.0 19.8 0.3 2701135 chrX 9845361 intron CG32698 + chrX 11195928 intergenic not near genes chrX 12546496 intron CG43921 - chrX_7_11195001 chrX_11195001 RAL-332 2095 chrX 12557159 12557165 chrX 12557228 12557239 5 73 7.0 11.0 9.0 0.5 80 chrX 12557159 intron CG43921 - chrX 12557199 intron CG43921 - chrX 12557239 intron CG43921 - chrX_5_12555001 chrX_12555001 RAL-332 2096 chrX 12674783 12674815 chrX 12674871 12674891 9 86 0.5 1.5 1.0 4.5 108 chrX 12674783 intron Tis11 + chrX 12674837 intron Tis11 + chrX 12674891 intron Tis11 + chrX_9_12670001 chrX_12670001 RAL-332 2097 chrX 12834834 12834863 chrX 12834936 12834961 5 101 1.0 1.5 1.2 2.3 127 chrX 12834834 intron Pde9 - chrX 12834898 intron Pde9 - chrX 12834961 intron Pde9 - chrX_5_12830001 chrX_12830001 RAL-332 2098 chrX 12839921 12839943 chrX 12840246 12840268 6 323 6.5 4.0 5.2 1.0 347 chrX 12839921 intron Pde9 - chrX 12840094 intron Pde9 - chrX 12840268 intron Pde9 - chrX_6_12840001 chrX_12840001 RAL-332 2099 chrX 12867246 12867267 chrX 12867569 12867597 5 326 4.5 4.5 4.5 0.9 351 chrX 12867246 intron Pde9 - chrX 12867422 intron Pde9 - chrX 12867597 intron Pde9 - chrX_5_12865001 chrX_12865001 RAL-332 2100 chrX 12919724 12919745 chrX 12919808 12919826 4 86 3.5 5.0 4.2 0.8 102 chrX 12919724 intron fne + chrX 12919775 intron fne + chrX 12919826 intron fne + chrX_4_12915001 chrX_12915001 RAL-332 2101 chrX 12953908 12953926 chrX 12954029 12954048 5 130 0.0 2.0 1.0 2.5 140 chrX 12953908 intron hec - chrX 12953978 intron hec - chrX 12954048 intron hec - chrX_5_12950001 chrX_12950001 RAL-332 2102 chrX 12969466 12969502 chrX 12969546 12969572 14 71 4.0 2.5 3.2 3.3 106 chrX 12969466 exon Mur11Da + chrX 12969519 exon Mur11Da + chrX 12969572 intron Mur11Da + chrX_14_12965001 chrX_12965001 RAL-332 2103 chrX 12971689 12971711 chrX 12971765 12971766 14 70 5.0 5.5 5.2 2.3 77 chrX 12971689 intron,exon CR43636 -,CG15721 + chrX 12971728 intron,exon CR43636 -,CG15721 + chrX 12971766 intron,exon CR43636 -,CG15721 + chrX_14_12970001 chrX_12970001 RAL-332 2104 chrX 13061362 13061374 chrX 13061462 13061484 9 106 2.5 2.5 2.5 2.6 122 chrX 13061362 intron rad + chrX 13061423 intron rad + chrX 13061484 intron rad + chrX_9_13060001 chrX_13060001 RAL-332 2105 chrX 13172352 13172383 chrX 13172424 13172448 14 70 5.5 7.0 6.2 1.9 96 chrX 13172352 exon CG34411 - chrX 13172400 intron CG34411 - chrX 13172448 intron CG34411 - chrX_14_13170001 chrX_13170001 RAL-332 2106 chrX 13429473 13429486 chrX 13430606 13430632 jockey 7 1142 1.0 3.5 2.2 2.2 1159 chrX 13429473 intergenic not near genes chrX 13430052 intergenic not near genes chrX 13430632 intergenic not near genes chrX_7_13430001 chrX_13430001 RAL-332 2107 chrX 13471358 13471372 chrX 13471437 13471440 4 76 9.0 0.0 4.5 0.7 82 chrX 13471358 intron Neto + chrX 13471399 intron Neto + chrX 13471440 intron Neto + chrX_4_13470001 chrX_13470001 RAL-332 2108 chrX 13843393 13843406 chrX 13843470 13843476 9 75 5.0 1.0 3.0 2.2 83 chrX 13843393 intron AMPdeam - chrX 13843434 intron AMPdeam - chrX 13843476 intron AMPdeam - chrX_9_13840001 chrX_13840001 RAL-332 2109 chrX 13935517 13935527 chrX 13935600 13935610 5 83 7.0 11.5 9.2 0.5 93 chrX 13935517 intron mamo - chrX 13935564 intron mamo - chrX 13935610 intron mamo - chrX_5_13935001 chrX_13935001 RAL-332 2110 chrX 13938002 13938006 chrX 13941263 13941276 I-element 4 3266 2.0 1.5 1.8 1.4 3274 chrX 13938002 intron mamo - chrX 13939639 intron mamo - chrX 13941276 intron mamo - chrX_4_13935001 chrX_13935001 RAL-332 2111 chrX 13943276 13943303 chrX 13943364 13943390 10 88 0.0 5.0 2.5 2.9 114 chrX 13943276 intron mamo - chrX 13943333 intron mamo - chrX 13943390 intron mamo - chrX_10_13940001 chrX_13940001 RAL-332 2112 chrX 13975873 13975904 chrX 13975950 13975977 7 75 0.0 2.0 1.0 3.5 104 chrX 13975873 intron mamo - chrX 13975925 intron mamo - chrX 13975977 intron mamo - chrX_7_13975001 chrX_13975001 RAL-332 2113 chrX 14105038 14105053 chrX 14114171 14114204 roo 11 9144 8.0 5.5 6.8 1.4 9166 chrX 14105038 intergenic not near genes chrX 14109621 intergenic not near genes chrX 14114204 5` UTR CR44657 + chrX_11_14105001 chrX_14105001 RAL-332 2114 chrX 14296460 14296490 chrX 14296533 14296566 10 73 2.5 4.5 3.5 2.2 106 chrX 14296460 intergenic not near genes chrX 14296513 intergenic not near genes chrX 14296566 intergenic not near genes chrX_10_14295001 chrX_14295001 RAL-332 2115 chrX 14589686 14589705 chrX 14589924 14589926 pogo 6 234 6.0 4.0 5.0 1.0 240 chrX 14589686 intron CG9413 - chrX 14589806 intron CG9413 - chrX 14589926 intron CG9413 - chrX_6_14585001 chrX_14585001 RAL-332 2116 chrX 14611009 14611015 chrX 14611177 14611183 4 167 9.0 9.0 9.0 0.4 174 chrX 14611009 intron NetA - chrX 14611096 intron NetA - chrX 14611183 intron NetA - chrX_4_14610001 chrX_14610001 RAL-332 2117 chrX 14636462 14636478 chrX 14641903 14641919 I-element 8 5437 5.5 4.5 5.0 1.3 5457 chrX 14636462 intron NetA - chrX 14639190 intron NetA - chrX 14641919 intron NetA - chrX_8_14635001 chrX_14635001 RAL-332 2118 chrX 14636479 14636499 chrX 14641899 14641905 I-element 10 5430 3.0 2.5 2.8 2.6 5426 chrX 14636479 intron NetA - chrX 14639192 intron NetA - chrX 14641905 intron NetA - chrX_10_14635001 chrX_14635001 RAL-332 2119 chrX 14774993 14775012 chrX 14775059 14775082 4 72 2.0 1.0 1.5 1.6 89 chrX 14774993 intergenic CG5334 + chrX 14775038 intergenic CG5334 + chrX 14775082 intergenic CG5334 + chrX_4_14775001 chrX_14775001 RAL-332 2120 chrX 14806767 14806789 chrX 14806852 14806877 7 86 0.0 0.0 0.0 7.0 110 chrX 14806767 intron rut - chrX 14806822 intron rut - chrX 14806877 intron rut - chrX_7_14805001 chrX_14805001 RAL-332 2121 chrX 14808353 14808367 chrX 14808412 14808427 4 66 3.0 0.5 1.8 1.4 74 chrX 14808353 intron rut - chrX 14808390 intron rut - chrX 14808427 intron rut - chrX_4_14805001 chrX_14805001 RAL-332 2122 chrX 14818793 14818797 chrX 14823966 14823995 copia 6 5188 2.5 1.5 2.0 2.0 5202 chrX 14818793 intron rut - chrX 14821394 intron rut - chrX 14823995 intron rut - chrX_6_14820001 chrX_14820001 RAL-332 2123 chrX 14936858 14936890 chrX 14946115 14946135 roo 6 9253 1.5 3.0 2.2 1.9 9277 chrX 14936858 intron pdgy - chrX 14941496 intron pdgy - chrX 14946135 intron pdgy - chrX_6_14940001 chrX_14940001 RAL-332 2124 chrX 15248264 15248295 chrX 15248340 15248363 9 72 2.0 1.0 1.5 3.6 99 chrX 15248264 intergenic not near genes chrX 15248314 intergenic not near genes chrX 15248363 intergenic not near genes chrX_9_15245001 chrX_15245001 RAL-332 2125 chrX 15277656 15277669 chrX 15277723 15277754 5 81 1.0 7.5 4.2 1.0 98 chrX 15277656 intergenic not near genes chrX 15277705 intergenic not near genes chrX 15277754 intergenic not near genes chrX_5_15275001 chrX_15275001 RAL-332 2126 chrX 15413052 15413073 chrX 15417354 15417375 Juan 8 4300 13.5 2.5 8.0 0.9 4323 chrX 15413052 intron Cngl - chrX 15415214 intron Cngl - chrX 15417375 intron Cngl - chrX_8_15415001 chrX_15415001 RAL-332 2127 chrX 15413074 15413086 chrX 15417350 15417373 Juan 6 4286 8.0 2.5 5.2 1.0 4299 chrX 15413074 intron Cngl - chrX 15415224 intron Cngl - chrX 15417373 intron Cngl - chrX_6_15415001 chrX_15415001 RAL-332 2128 chrX 15536703 15536707 chrX 15536775 15536784 5 75 16.0 11.5 13.8 0.3 81 chrX 15536703 intron Ac13E - chrX 15536744 intron Ac13E - chrX 15536784 intron Ac13E - chrX_5_15535001 chrX_15535001 RAL-332 2129 chrX 15678053 15678068 chrX 15678115 15678131 9 69 4.0 3.5 3.8 1.9 78 chrX 15678053 intergenic CG12708 + chrX 15678092 intergenic CG12708 + chrX 15678131 intergenic CG12708 + chrX_9_15675001 chrX_15675001 RAL-332 2130 chrX 15681404 15681424 chrX 15681477 15681502 12 76 2.5 1.0 1.8 4.3 98 chrX 15681404 intergenic not near genes chrX 15681453 intergenic not near genes chrX 15681502 intergenic not near genes chrX_12_15680001 chrX_15680001 RAL-332 2131 chrX 15818781 15818807 chrX 15818849 15818883 13 71 2.0 5.0 3.5 2.9 102 chrX 15818781 intron sd + chrX 15818832 intron sd + chrX 15818883 intron sd + chrX_13_15815001 chrX_15815001 RAL-332 2132 chrX 16492647 16492679 chrX 16498224 16498256 mdg3 7 5576 3.5 4.0 3.8 1.5 5609 chrX 16492647 intron para - chrX 16495452 intron para - chrX 16498256 intron para - chrX_7_16495001 chrX_16495001 RAL-332 2133 chrX 16841408 16841423 chrX 16841486 16841501 6 78 3.5 1.5 2.5 1.7 93 chrX 16841408 exon RSG7 - chrX 16841454 intron RSG7 - chrX 16841501 intron RSG7 - chrX_6_16840001 chrX_16840001 RAL-332 2134 chrX 17011973 17011998 chrX 17012056 17012074 8 80 5.5 6.0 5.8 1.2 101 chrX 17011973 intron CG45002 - chrX 17012024 intron CG45002 - chrX 17012074 intron CG45002 - chrX_8_17010001 chrX_17010001 RAL-332 2135 chrX 17122646 17122674 chrX 17122728 17122765 11 87 2.0 3.0 2.5 3.1 119 chrX 17122646 intron CG5004 + chrX 17122706 intron CG5004 + chrX 17122765 intron CG5004 + chrX_11_17120001 chrX_17120001 RAL-332 2136 chrX 17335691 17335729 chrX 17335783 17335815 11 88 6.5 3.0 4.8 1.9 124 chrX 17335691 intergenic not near genes chrX 17335753 intergenic not near genes chrX 17335815 intergenic not near genes chrX_11_17335001 chrX_17335001 RAL-332 2137 chrX 17476458 17476489 chrX 17476534 17476543 10 63 3.5 1.0 2.2 3.1 85 chrX 17476458 intron CG43658 - chrX 17476500 intron CG43658 - chrX 17476543 intron CG43658 - chrX_10_17475001 chrX_17475001 RAL-332 2138 chrX 17493265 17493283 chrX 17493336 17493363 10 75 3.0 3.5 3.2 2.4 98 chrX 17493265 intron CG43658 - chrX 17493314 intron CG43658 - chrX 17493363 intron CG43658 - chrX_10_17490001 chrX_17490001 RAL-332 2139 chrX 17502353 17502372 chrX 17502433 17502434 4 76 0.5 1.5 1.0 2.0 81 chrX 17502353 intron CG43658 - chrX 17502394 intron CG43658 - chrX 17502434 intron CG43658 - chrX_4_17500001 chrX_17500001 RAL-332 2140 chrX 17545010 17545034 chrX 17545084 17545116 7 78 3.0 5.5 4.2 1.3 106 chrX 17545010 intron CG43658 - chrX 17545063 intron CG43658 - chrX 17545116 intron CG43658 - chrX_7_17545001 chrX_17545001 RAL-332 2141 chrX 17556941 17556972 chrX 17557440 17557453 mdg1 10 496 2.5 7.0 4.8 1.7 512 chrX 17556941 intron CG43658 - chrX 17557197 intron CG43658 - chrX 17557453 intron CG43658 - chrX_10_17555001 chrX_17555001 RAL-332 2142 chrX 17716589 17716604 chrX 17716672 17716691 9 81 5.0 3.0 4.0 1.8 102 chrX 17716589 intron CG42684 + chrX 17716640 intron CG42684 + chrX 17716691 intron CG42684 + chrX_9_17715001 chrX_17715001 RAL-332 2143 chrX 17782569 17782600 chrX 17782655 17782689 14 83 3.5 4.0 3.8 2.9 120 chrX 17782569 intergenic not near genes chrX 17782629 intergenic not near genes chrX 17782689 intergenic not near genes chrX_14_17780001 chrX_17780001 RAL-332 2144 chrX 17792951 17792983 chrX 17796249 17796271 flea 8 3292 3.0 2.0 2.5 2.3 3320 chrX 17792951 intron OdsH + chrX 17794611 intron OdsH + chrX 17796271 intron OdsH + chrX_8_17790001 chrX_17790001 RAL-332 2145 chrX 18122822 18122840 chrX 18122893 18122911 6 73 5.5 2.0 3.8 1.2 89 chrX 18122822 5` UTR CR45606 + chrX 18122866 5` UTR CR45606 + chrX 18122911 5` UTR CR45606 + chrX_6_18120001 chrX_18120001 RAL-332 2146 chrX 18194076 18194105 chrX 18194599 18194639 BS 7 528 0.0 5.5 2.8 1.8 563 chrX 18194076 intron Frq2 + chrX 18194358 intron Frq2 + chrX 18194639 intron Frq2 + chrX_7_18190001 chrX_18190001 RAL-332 2147 chrX 18512019 18512039 chrX 18512099 18512122 8 83 5.5 4.0 4.8 1.4 103 chrX 18512019 intron Ggt-1 - chrX 18512070 5` UTR Ggt-1 - chrX 18512122 5` UTR Ggt-1 - chrX_8_18510001 chrX_18510001 RAL-332 2148 chrX 18645023 18645036 chrX 18645121 18645134 6 97 3.5 3.0 3.2 1.4 111 chrX 18645023 intron Rip11 - chrX 18645078 intron Rip11 - chrX 18645134 intron Rip11 - chrX_6_18645001 chrX_18645001 RAL-332 2149 chrX 18688255 18688275 chrX 18688378 18688398 6 123 2.5 2.5 2.5 1.7 143 chrX 18688255 3` UTR phm + chrX 18688326 3` UTR phm + chrX 18688398 3` UTR phm + chrX_6_18685001 chrX_18685001 RAL-332 2150 chrX 19060427 19060434 chrX 19065193 19065214 Doc 5 4777 3.5 6.5 5.0 0.8 4787 chrX 19060427 intron CG14190 + chrX 19062820 intron CG14190 + chrX 19065214 intron CG14190 + chrX_5_19060001 chrX_19060001 RAL-332 2151 chrX 19109131 19109138 chrX 19109297 19109322 5 176 0.0 5.5 2.8 1.3 191 chrX 19109131 intergenic not near genes chrX 19109226 intergenic not near genes chrX 19109322 intergenic not near genes chrX_5_19105001 chrX_19105001 RAL-332 2152 chrX 19125691 19125720 chrX 19125820 19125849 8 126 1.5 4.0 2.8 2.1 158 chrX 19125691 intron tgy - chrX 19125770 intron tgy - chrX 19125849 intron tgy - chrX_8_19125001 chrX_19125001 RAL-332 2153 chrX 19136562 19136585 chrX 19143482 19143504 412 7 6919 2.0 5.5 3.8 1.5 6942 chrX 19136562 intergenic not near genes chrX 19140033 intergenic not near genes chrX 19143504 3` UTR RhoGAP18B - chrX_7_19140001 chrX_19140001 RAL-332 2154 chrX 19200007 19200027 chrX 19200079 19200109 4 73 3.5 1.0 2.2 1.2 102 chrX 19200007 intron CG7990 - chrX 19200058 intron CG7990 - chrX 19200109 intron CG7990 - chrX_4_19200001 chrX_19200001 RAL-332 2155 chrX 13057298 13057299 chrX 19242813 19242813 9 6185514 4.0 6.0 5.0 1.5 6185515 chrX 13057298 intron rad + chrX 16150056 intergenic not near genes chrX 19242813 intergenic not near genes chrX_9_16150001 chrX_16150001 RAL-332 2156 chrX 19281003 19281033 chrX 19281132 19281162 6 126 0.0 2.0 1.0 3.0 159 chrX 19281003 intergenic CG8034 - chrX 19281082 intergenic CG8034 - chrX 19281162 intergenic CG8034 - chrX_6_19280001 chrX_19280001 RAL-332 2157 chrX 19318455 19318470 chrX 19318590 19318591 6 130 8.5 4.0 6.2 0.8 136 chrX 19318455 intron out - chrX 19318523 intron out - chrX 19318591 intron out - chrX_6_19315001 chrX_19315001 RAL-332 2158 chrX 19318472 19318486 chrX 19318588 19318611 9 123 5.0 4.0 4.5 1.6 139 chrX 19318472 intron out - chrX 19318542 intron out - chrX 19318611 intron out - chrX_9_19315001 chrX_19315001 RAL-332 2159 chrX 19356997 19357017 chrX 19358429 19358440 NOF 9 1433 2.5 0.5 1.5 3.6 1443 chrX 19356997 intron kek5 + chrX 19357718 intron kek5 + chrX 19358440 intron kek5 + chrX_9_19355001 chrX_19355001 RAL-332 2160 chrX 19472120 19472162 chrX 19472689 19472704 jockey 24 561 4.0 7.0 5.5 3.7 584 chrX 19472120 intergenic kek5 + chrX 19472412 intergenic kek5 + chrX 19472704 intergenic not near genes chrX_24_19470001 chrX_19470001 RAL-332 2161 chrX 19500576 19500751 chrX 19500653 19500838 7 80 0.0 2.5 1.2 3.2 262 chrX 19500576 intron,intron CG14200 +,Pfrx + chrX 19500707 intron,intron CG14200 +,Pfrx + chrX 19500838 intron,intron CG14200 +,Pfrx + chrX_7_19500001 chrX_19500001 RAL-332 2162 chrX 19710072 19710095 chrX 19711858 19711877 S-element 6 1785 4.0 5.5 4.8 1.0 1805 chrX 19710072 intron meso18E - chrX 19710974 intron meso18E - chrX 19711877 intron meso18E - chrX_6_19710001 chrX_19710001 RAL-332 2163 chrX 19812747 19812759 chrX 19816045 19816049 Gypsy12A_LTR 4 3293 29.0 10.0 19.5 0.2 3302 chrX 19812747 5` UTR skpD + chrX 19814398 intergenic not near genes chrX 19816049 intergenic skpC + chrX_4_19810001 chrX_19810001 RAL-332 2164 chrX 19822828 19822862 chrX 19822995 19823018 20 161 6.0 3.0 4.5 3.6 190 chrX 19822828 intergenic not near genes chrX 19822923 intergenic skpE - chrX 19823018 intergenic skpE - chrX_20_19820001 chrX_19820001 RAL-332 2165 chrX 19838507 19838524 chrX 19838584 19838602 5 75 3.5 1.5 2.5 1.4 95 chrX 19838507 intron pico - chrX 19838554 intron pico - chrX 19838602 intron pico - chrX_5_19835001 chrX_19835001 RAL-332 2166 chrX 19881458 19881473 chrX 19881536 19881538 7 77 2.0 0.5 1.2 3.2 80 chrX 19881458 intron Hers + chrX 19881498 intron Hers + chrX 19881538 intron Hers + chrX_7_19880001 chrX_19880001 RAL-332 2167 chrX 19884104 19884119 chrX 19884166 19884166 4 61 5.0 7.0 6.0 0.6 62 chrX 19884104 intron Hers + chrX 19884135 intron Hers + chrX 19884166 intron Hers + chrX_4_19880001 chrX_19880001 RAL-332 2168 chrX 19983862 19983893 chrX 19983942 19983973 5 80 3.5 1.5 2.5 1.4 111 chrX 19983862 intergenic not near genes chrX 19983918 intergenic not near genes chrX 19983973 intergenic not near genes chrX_5_19980001 chrX_19980001 RAL-332 2169 chrX 19996174 19996185 chrX 19996274 19996283 5 100 4.5 4.0 4.2 1.0 109 chrX 19996174 intergenic not near genes chrX 19996228 intergenic not near genes chrX 19996283 intergenic not near genes chrX_5_19995001 chrX_19995001 RAL-332 2170 chrX 20069273 20069297 chrX 20069399 20069429 13 130 2.0 5.5 3.8 2.7 156 chrX 20069273 intergenic not near genes chrX 20069351 intergenic not near genes chrX 20069429 intergenic not near genes chrX_13_20065001 chrX_20065001 RAL-332 2171 chrX 20259373 20259385 chrX 20446500 20446504 7 187135 25.5 2.5 14.0 0.5 187131 chrX 20259373 exon CG42577 + chrX 20352938 intergenic not near genes chrX 20446504 exon CG42578 + chrX_7_20350001 chrX_20350001 RAL-332 2172 chrX 20312887 20312911 chrX 20312962 20312989 11 73 2.5 3.0 2.8 2.9 102 chrX 20312887 intron CG1504 - chrX 20312938 intron CG1504 - chrX 20312989 intron CG1504 - chrX_11_20310001 chrX_20310001 RAL-332 2173 chrX 20377338 20377348 chrX 20378788 20378815 hobo 6 1458 6.5 7.5 7.0 0.8 1477 chrX 20377338 intergenic not near genes chrX 20378076 intergenic not near genes chrX 20378815 intergenic not near genes chrX_6_20375001 chrX_20375001 RAL-332 2174 chrX 20386837 20386846 chrX 20386907 20386932 4 82 1.5 1.0 1.2 1.8 95 chrX 20386837 intergenic not near genes chrX 20386884 intergenic not near genes chrX 20386932 intergenic not near genes chrX_4_20385001 chrX_20385001 RAL-332 2175 chrX 20443173 20443202 chrX 20443249 20443263 8 67 3.0 1.5 2.2 2.5 90 chrX 20443173 exon CG1695 + chrX 20443218 intron CG1695 + chrX 20443263 intron CG1695 + chrX_8_20440001 chrX_20440001 RAL-332 2176 chrX 20468023 20468040 chrX 20468111 20468129 4 88 1.0 0.5 0.8 2.2 106 chrX 20468023 intron GstT3 + chrX 20468076 intron GstT3 + chrX 20468129 intron GstT3 + chrX_4_20465001 chrX_20465001 RAL-332 2177 chrX 20476964 20476975 chrX 20477054 20477057 5 88 9.5 3.5 6.5 0.7 93 chrX 20476964 intron RhoGAP19D - chrX 20477010 intron RhoGAP19D - chrX 20477057 intron RhoGAP19D - chrX_5_20475001 chrX_20475001 RAL-332 2178 chrX 20528621 20528633 chrX 20528953 20528972 4 342 2.5 1.0 1.8 1.4 351 chrX 20528621 intergenic not near genes chrX 20528796 intergenic not near genes chrX 20528972 intergenic not near genes chrX_4_20525001 chrX_20525001 RAL-332 2179 chrX 20578086 20578110 chrX 20578161 20578180 6 75 3.0 3.5 3.2 1.4 94 chrX 20578086 intergenic not near genes chrX 20578133 intergenic not near genes chrX 20578180 intergenic not near genes chrX_6_20575001 chrX_20575001 RAL-332 2180 chrX 20641193 20641217 chrX 20641295 20641308 6 104 3.0 5.5 4.2 1.2 115 chrX 20641193 intergenic not near genes chrX 20641250 intergenic not near genes chrX 20641308 intergenic not near genes chrX_6_20640001 chrX_20640001 RAL-332 2181 chrX 20741579 20741602 chrX 20741655 20741678 4 72 1.5 0.0 0.8 2.2 99 chrX 20741579 intergenic not near genes chrX 20741628 intergenic not near genes chrX 20741678 intergenic not near genes chrX_4_20740001 chrX_20740001 RAL-332 2182 chrX 20836725 20836757 chrX 20844327 20844359 roo 11 7598 0.5 4.0 2.2 3.4 7634 chrX 20836725 intron shakB - chrX 20840542 intron shakB - chrX 20844359 intron shakB - chrX_11_20840001 chrX_20840001 RAL-332 2183 chrX 20903823 20903853 chrX 20903913 20903944 11 85 5.0 4.5 4.8 1.9 121 chrX 20903823 intron shakB - chrX 20903884 intron shakB - chrX 20903944 intron shakB - chrX_11_20900001 chrX_20900001 RAL-332 2184 chrX 20940718 20940753 chrX 20942187 20942222 hobo 13 1465 5.0 9.0 7.0 1.6 1504 chrX 20940718 intergenic not near genes chrX 20941470 intergenic not near genes chrX 20942222 intergenic not near genes chrX_13_20940001 chrX_20940001 RAL-332 2185 chrX 20981026 20981059 chrX 20981129 20981162 9 100 2.0 3.5 2.8 2.4 136 chrX 20981026 intergenic not near genes chrX 20981094 intergenic not near genes chrX 20981162 intergenic not near genes chrX_9_20980001 chrX_20980001 RAL-332 2186 chrX 21078771 21078780 chrX 21078849 21078858 4 78 1.0 2.5 1.8 1.4 87 chrX 21078771 intron bves + chrX 21078814 intron bves + chrX 21078858 intron bves + chrX_4_21075001 chrX_21075001 RAL-332 2187 chrX 21086130 21086155 chrX 21087159 21087180 jockey 9 1026 4.0 1.5 2.8 2.4 1050 chrX 21086130 intergenic not near genes chrX 21086655 intergenic not near genes chrX 21087180 intergenic not near genes chrX_9_21085001 chrX_21085001 RAL-332 2188 chrX 21474410 21474421 chrX 21474776 21474787 1731 5 366 8.0 5.5 6.8 0.6 377 chrX 21474410 intergenic not near genes chrX 21474598 intergenic not near genes chrX 21474787 intergenic not near genes chrX_5_21470001 chrX_21470001 RAL-332 2189 chrX 21474427 21474435 chrX 21474775 21474792 1731 5 359 3.0 5.5 4.2 1.0 365 chrX 21474427 intergenic not near genes chrX 21474610 intergenic not near genes chrX 21474792 intergenic not near genes chrX_5_21470001 chrX_21470001 RAL-332 2190 chrX 22448272 22448288 chrX 22448411 22448422 4 137 0.5 3.5 2.0 1.3 150 chrX 22448272 intron CG14615 - chrX 22448347 intron CG14615 - chrX 22448422 intron CG14615 - chrX_4_22445001 chrX_22445001 RAL-332 2191 chrX 22564556 22564578 chrX 22575146 22575150 jockey 5 10579 16.0 8.5 12.2 0.4 10594 chrX 22564556 intergenic not near genes chrX 22569853 intergenic not near genes chrX 22575150 intergenic not near genes chrX_5_22565001 chrX_22565001 RAL-332 2192 chrX 22660569 22660591 chrX 22660653 22660667 10 80 6.0 0.0 3.0 2.5 98 chrX 22660569 intron CR44997 + chrX 22660618 intron CR44997 + chrX 22660667 intron CR44997 + chrX_10_22660001 chrX_22660001 RAL-332 2193 chrX 22677291 22677328 chrX 22677500 22677528 13 203 1.0 3.0 2.0 4.3 237 chrX 22677291 intron CR44997 + chrX 22677410 intron CR44997 + chrX 22677528 intron CR44997 + chrX_13_22675001 chrX_22675001 RAL-332 2194 chrX 22697506 22697524 chrX 22701800 22701821 Juan 8 4292 4.0 1.0 2.5 2.3 4315 chrX 22697506 intron CR44997 + chrX 22699664 intron CR44997 + chrX 22701821 intron CR44997 + chrX_8_22695001 chrX_22695001 RAL-332 2195 chrX 22771514 22771537 chrX 22774797 22774811 297 5 3286 4.5 2.5 3.5 1.1 3297 chrX 22771514 intron CR44997 + chrX 22773162 intron CR44997 + chrX 22774811 intron CR44997 + chrX_5_22770001 chrX_22770001 RAL-332 2196 chrX 22798786 22798794 chrX 22798903 22798911 5 117 9.0 5.0 7.0 0.6 125 chrX 22798786 intergenic not near genes chrX 22798848 intergenic not near genes chrX 22798911 intergenic not near genes chrX_5_22795001 chrX_22795001 RAL-332 2197 chrX 22798795 22798801 chrX 22798890 22798918 4 111 7.0 4.5 5.8 0.6 123 chrX 22798795 intergenic not near genes chrX 22798856 intergenic not near genes chrX 22798918 intergenic not near genes chrX_4_22795001 chrX_22795001 RAL-332 2198 chrX 22922533 22922551 chrX 22922599 22922622 7 71 2.5 3.0 2.8 1.8 89 chrX 22922533 intergenic not near genes chrX 22922578 intergenic not near genes chrX 22922622 intergenic not near genes chrX_7_22920001 chrX_22920001 RAL-332 2199 chrX 22992395 22992420 chrX 22992526 22992549 10 129 2.5 1.0 1.8 3.6 154 chrX 22992395 intron,intron stnA -,stnB - chrX 22992472 intron,intron stnA -,stnB - chrX 22992549 intron,intron stnA -,stnB - chrX_10_22990001 chrX_22990001 RAL-332 2200 chrX 22996316 22996341 chrX 23003548 23003559 roo 12 7228 3.0 2.5 2.8 3.2 7243 chrX 22996316 intron,intron stnA -,stnB - chrX 22999938 intron,intron stnA -,stnB - chrX 23003559 intron,intron stnA -,stnB - chrX_12_22995001 chrX_22995001 RAL-332 2201 chrY 975604 975825 chrY 975702 975932 12 105 212.0 194.0 203.0 0.1 328 chrY 975604 intergenic not near genes chrY 975768 intergenic not near genes chrY 975932 intergenic not near genes chrY_12_975001 chrY_975001 RAL-332