SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 205214 205233 chr2L 205303 205323 6 90 4.0 1.5 2.8 1.6 109 chr2L 205214 intron CG11617 - chr2L 205268 intron CG11617 - chr2L 205323 exon CG11617 - chr2L_6_205001 chr2L_205001 RAL-325 2 chr2L 314294 314309 chr2L 314376 314394 5 84 1.0 0.0 0.5 3.3 100 chr2L 314294 intron Plc21C + chr2L 314344 intron Plc21C + chr2L 314394 intron Plc21C + chr2L_5_310001 chr2L_310001 RAL-325 3 chr2L 388578 388605 chr2L 388746 388773 4 168 1.0 0.5 0.8 2.2 195 chr2L 388578 intergenic not near genes chr2L 388676 intergenic not near genes chr2L 388773 intergenic not near genes chr2L_4_385001 chr2L_385001 RAL-325 4 chr2L 444667 444692 chr2L 448044 448054 4 3366 26.5 17.0 21.8 0.2 3387 chr2L 444667 exon ex + chr2L 446360 exon ex + chr2L 448054 3` UTR ex + chr2L_4_445001 chr2L_445001 RAL-325 5 chr2L 770466 770482 chr2L 772245 772262 Bari1 5 1776 5.0 3.0 4.0 1.0 1796 chr2L 770466 intergenic not near genes chr2L 771364 intergenic not near genes chr2L 772262 intergenic CR44614 + chr2L_5_770001 chr2L_770001 RAL-325 6 chr2L 826919 826930 chr2L 826981 827000 5 66 2.0 2.5 2.2 1.6 81 chr2L 826919 intron dock + chr2L 826960 intron dock + chr2L 827000 intron dock + chr2L_5_825001 chr2L_825001 RAL-325 7 chr2L 877840 877861 chr2L 877921 877938 7 78 4.5 2.0 3.2 1.7 98 chr2L 877840 3` UTR,exon CG15824 -,ninaA + chr2L 877889 3` UTR,intron CG15824 -,ninaA + chr2L 877938 3` UTR,intron CG15824 -,ninaA + chr2L_7_875001 chr2L_875001 RAL-325 8 chr2L 914674 914704 chr2L 914751 914784 7 78 4.0 4.5 4.2 1.3 110 chr2L 914674 intron GluRIIC + chr2L 914729 intron GluRIIC + chr2L 914784 intron GluRIIC + chr2L_7_910001 chr2L_910001 RAL-325 9 chr2L 922466 922495 chr2L 922547 922576 7 80 2.0 1.5 1.8 2.5 110 chr2L 922466 intergenic CG4341 + chr2L 922521 intergenic CG4341 + chr2L 922576 intergenic CG4341 + chr2L_7_920001 chr2L_920001 RAL-325 10 chr2L 923521 923545 chr2L 923705 923729 12 185 5.0 10.0 7.5 1.4 208 chr2L 923521 intron CG4341 + chr2L 923625 intron CG4341 + chr2L 923729 intron CG4341 + chr2L_12_920001 chr2L_920001 RAL-325 11 chr2L 931639 931660 chr2L 931715 931739 7 77 1.5 4.5 3.0 1.8 100 chr2L 931639 intron CG4341 + chr2L 931689 intron CG4341 + chr2L 931739 intron CG4341 + chr2L_7_930001 chr2L_930001 RAL-325 12 chr2L 969172 969206 chr2L 969428 969463 11 251 3.5 2.5 3.0 2.8 291 chr2L 969172 intergenic not near genes chr2L 969318 intergenic not near genes chr2L 969463 intergenic not near genes chr2L_11_965001 chr2L_965001 RAL-325 13 chr2L 976901 976910 chr2L 984533 984545 roo 4 7635 2.5 2.0 2.2 1.2 7644 chr2L 976901 intergenic not near genes chr2L 980723 intergenic not near genes chr2L 984545 intergenic not near genes chr2L_4_980001 chr2L_980001 RAL-325 14 chr2L 1035561 1035590 chr2L 1035636 1035665 7 74 3.5 2.5 3.0 1.8 104 chr2L 1035561 intron IA-2 - chr2L 1035613 intron IA-2 - chr2L 1035665 intron IA-2 - chr2L_7_1035001 chr2L_1035001 RAL-325 15 chr2L 1126674 1126706 chr2L 1126749 1126782 7 74 3.0 0.5 1.8 2.5 108 chr2L 1126674 intron Pino - chr2L 1126728 intron Pino - chr2L 1126782 intron Pino - chr2L_7_1125001 chr2L_1125001 RAL-325 16 chr2L 1137658 1137680 chr2L 1137837 1137860 7 178 3.0 1.0 2.0 2.3 202 chr2L 1137658 intron CG4577 + chr2L 1137759 intron CG4577 + chr2L 1137860 intron CG4577 + chr2L_7_1135001 chr2L_1135001 RAL-325 17 chr2L 1220139 1220161 chr2L 1227600 1227626 blood 11 7464 4.0 1.5 2.8 2.9 7487 chr2L 1220139 intron CG42329 + chr2L 1223882 intron CG42329 + chr2L 1227626 intron CG42329 + chr2L_11_1220001 chr2L_1220001 RAL-325 18 chr2L 1503449 1503458 chr2L 1503527 1503536 4 77 2.0 3.5 2.8 1.1 87 chr2L 1503449 intron CR44064 + chr2L 1503492 intron CR44064 + chr2L 1503536 intron CR44064 + chr2L_4_1500001 chr2L_1500001 RAL-325 19 chr2L 1568829 1568855 chr2L 1568920 1568954 6 94 2.0 3.0 2.5 1.7 125 chr2L 1568829 intron haf + chr2L 1568892 intron haf + chr2L 1568954 intron haf + chr2L_6_1565001 chr2L_1565001 RAL-325 20 chr2L 1570686 1570718 chr2L 1573558 1573590 F-element 9 2872 3.5 2.5 3.0 2.2 2904 chr2L 1570686 intron haf + chr2L 1572138 intron haf + chr2L 1573590 intron haf + chr2L_9_1570001 chr2L_1570001 RAL-325 21 chr2L 1635405 1635430 chr2L 1635540 1635562 7 134 0.0 1.0 0.5 4.7 157 chr2L 1635405 intergenic not near genes chr2L 1635484 intergenic not near genes chr2L 1635562 intergenic not near genes chr2L_7_1635001 chr2L_1635001 RAL-325 22 chr2L 1711358 1711387 chr2L 1711678 1711687 mdg3 9 308 2.0 4.5 3.2 2.1 329 chr2L 1711358 3` UTR,3` UTR mRpL48 +,frtz - chr2L 1711522 3` UTR frtz - chr2L 1711687 3` UTR frtz - chr2L_9_1710001 chr2L_1710001 RAL-325 23 chr2L 1993212 1993230 chr2L 1993298 1993305 4 83 2.0 0.5 1.2 1.8 93 chr2L 1993212 intergenic not near genes chr2L 1993258 intergenic not near genes chr2L 1993305 intergenic not near genes chr2L_4_1990001 chr2L_1990001 RAL-325 24 chr2L 2047801 2047831 chr2L 2047996 2048026 9 193 1.0 0.0 0.5 6.0 225 chr2L 2047801 3` UTR Kebab + chr2L 2047914 3` UTR Kebab + chr2L 2048026 3` UTR Kebab + chr2L_9_2045001 chr2L_2045001 RAL-325 25 chr2L 2100390 2100406 chr2L 2109541 2109542 roo 7 9148 4.5 3.0 3.8 1.5 9152 chr2L 2100390 intron dpr3 - chr2L 2104966 intron dpr3 - chr2L 2109542 intron dpr3 - chr2L_7_2100001 chr2L_2100001 RAL-325 26 chr2L 2112122 2112144 chr2L 2119775 2119796 opus 5 7652 4.5 2.5 3.5 1.1 7674 chr2L 2112122 intergenic not near genes chr2L 2115959 intergenic not near genes chr2L 2119796 intergenic not near genes chr2L_5_2115001 chr2L_2115001 RAL-325 27 chr2L 2262322 2262339 chr2L 2262387 2262415 11 74 1.0 0.0 0.5 7.3 93 chr2L 2262322 intergenic not near genes chr2L 2262368 intergenic not near genes chr2L 2262415 intergenic not near genes chr2L_11_2260001 chr2L_2260001 RAL-325 28 chr2L 2294046 2294068 chr2L 2299249 2299273 copia 4 5201 2.5 5.0 3.8 0.8 5227 chr2L 2294046 intergenic not near genes chr2L 2296660 intergenic not near genes chr2L 2299273 intergenic not near genes chr2L_4_2295001 chr2L_2295001 RAL-325 29 chr2L 2303509 2303518 chr2L 2303590 2303600 4 82 1.0 1.5 1.2 1.8 91 chr2L 2303509 intergenic not near genes chr2L 2303554 intergenic not near genes chr2L 2303600 intergenic not near genes chr2L_4_2300001 chr2L_2300001 RAL-325 30 chr2L 2533521 2533540 chr2L 2533771 2533789 5 250 1.5 3.5 2.5 1.4 268 chr2L 2533521 3` UTR CR44112 - chr2L 2533655 intergenic CR44112 - chr2L 2533789 intergenic CR44112 - chr2L_5_2530001 chr2L_2530001 RAL-325 31 chr2L 2565555 2565562 chr2L 2571627 2571634 297 4 6072 2.0 2.5 2.2 1.2 6079 chr2L 2565555 exon Cyp309a2 - chr2L 2568594 intron Cyp309a2 - chr2L 2571634 intron Cyp309a2 - chr2L_4_2565001 chr2L_2565001 RAL-325 32 chr2L 2634529 2634557 chr2L 2634627 2634654 6 99 1.0 1.5 1.2 2.7 125 chr2L 2634529 intergenic not near genes chr2L 2634592 intergenic not near genes chr2L 2634654 intergenic not near genes chr2L_6_2630001 chr2L_2630001 RAL-325 33 chr2L 2661221 2661234 chr2L 2663040 2663049 I-element 7 1826 0.5 1.5 1.0 3.5 1828 chr2L 2661221 intergenic not near genes chr2L 2662135 intergenic not near genes chr2L 2663049 intergenic not near genes chr2L_7_2660001 chr2L_2660001 RAL-325 34 chr2L 2667626 2667646 chr2L 2667705 2667725 6 76 2.0 2.0 2.0 2.0 99 chr2L 2667626 intergenic not near genes chr2L 2667676 intergenic not near genes chr2L 2667725 intergenic not near genes chr2L_6_2665001 chr2L_2665001 RAL-325 35 chr2L 2944632 2944646 chr2L 2944736 2944739 5 102 0.5 3.5 2.0 1.7 107 chr2L 2944632 intron lilli + chr2L 2944686 intron lilli + chr2L 2944739 intron lilli + chr2L_5_2940001 chr2L_2940001 RAL-325 36 chr2L 3073036 3073061 chr2L 3078239 3078264 copia 11 5203 3.5 3.0 3.2 2.6 5228 chr2L 3073036 intron toc - chr2L 3075650 intron toc - chr2L 3078264 intron toc - chr2L_11_3075001 chr2L_3075001 RAL-325 37 chr2L 3108877 3108891 chr2L 3108953 3108958 4 72 0.0 0.0 0.0 4.0 81 chr2L 3108877 intron toc - chr2L 3108918 intron toc - chr2L 3108958 intron toc - chr2L_4_3105001 chr2L_3105001 RAL-325 38 chr2L 3202742 3202756 chr2L 3210171 3210185 mdg1 4 7429 3.0 1.5 2.2 1.2 7443 chr2L 3202742 intergenic not near genes chr2L 3206464 intergenic not near genes chr2L 3210185 intergenic CR45336 + chr2L_4_3205001 chr2L_3205001 RAL-325 39 chr2L 3291237 3291268 chr2L 3291317 3291325 4 74 2.0 4.5 3.2 1.0 88 chr2L 3291237 intergenic CG9664 - chr2L 3291281 3` UTR CG9664 - chr2L 3291325 3` UTR CG9664 - chr2L_4_3290001 chr2L_3290001 RAL-325 40 chr2L 3323262 3323284 chr2L 3323368 3323391 9 106 1.5 4.0 2.8 2.4 129 chr2L 3323262 intergenic CG8837 + chr2L 3323326 intergenic CG8837 + chr2L 3323391 intergenic CG8837 + chr2L_9_3320001 chr2L_3320001 RAL-325 41 chr2L 3508352 3508374 chr2L 3508430 3508452 9 78 0.0 1.0 0.5 6.0 100 chr2L 3508352 intergenic tim -,CR45299 + chr2L 3508402 intergenic CR45299 +,tim - chr2L 3508452 intergenic CR45299 +,tim - chr2L_9_3505001 chr2L_3505001 RAL-325 42 chr2L 3663312 3663338 chr2L 3663391 3663416 12 78 2.0 4.5 3.2 2.9 104 chr2L 3663312 intron CG34340 + chr2L 3663364 intron CG34340 + chr2L 3663416 intron CG34340 + chr2L_12_3660001 chr2L_3660001 RAL-325 43 chr2L 3706233 3706262 chr2L 3706308 3706341 4 78 0.5 1.0 0.8 2.2 108 chr2L 3706233 intergenic CG31777 - chr2L 3706287 intergenic CG31777 - chr2L 3706341 intergenic CG31777 - chr2L_4_3705001 chr2L_3705001 RAL-325 44 chr2L 4160505 4160529 chr2L 4160916 4160939 5 410 1.0 4.5 2.8 1.3 434 chr2L 4160505 intergenic not near genes chr2L 4160722 intergenic not near genes chr2L 4160939 intergenic not near genes chr2L_5_4160001 chr2L_4160001 RAL-325 45 chr2L 4224396 4224424 chr2L 4224474 4224499 9 75 0.5 3.5 2.0 3.0 103 chr2L 4224396 intergenic CG3702 - chr2L 4224448 intergenic CG3702 - chr2L 4224499 intergenic CG3702 - chr2L_9_4220001 chr2L_4220001 RAL-325 46 chr2L 4275080 4275106 chr2L 4275163 4275189 8 81 0.5 4.0 2.2 2.5 109 chr2L 4275080 intergenic not near genes chr2L 4275134 intergenic not near genes chr2L 4275189 intergenic not near genes chr2L_8_4275001 chr2L_4275001 RAL-325 47 chr2L 4586981 4586995 chr2L 4587059 4587085 9 82 3.0 0.5 1.8 3.2 104 chr2L 4586981 intron dp - chr2L 4587033 intron dp - chr2L 4587085 intron dp - chr2L_9_4585001 chr2L_4585001 RAL-325 48 chr2L 4601720 4601735 chr2L 4609158 4609176 mdg1 10 7440 2.0 1.5 1.8 3.6 7456 chr2L 4601720 intron dp - chr2L 4605448 intron dp - chr2L 4609176 intron dp - chr2L_10_4605001 chr2L_4605001 RAL-325 49 chr2L 4701843 4701867 chr2L 4701979 4702006 6 140 0.0 1.5 0.8 3.3 163 chr2L 4701843 intron CG34351 + chr2L 4701924 intron CG34351 + chr2L 4702006 intron CG34351 + chr2L_6_4700001 chr2L_4700001 RAL-325 50 chr2L 4819495 4819519 chr2L 4819617 4819637 9 122 2.5 4.0 3.2 2.1 142 chr2L 4819495 intergenic not near genes chr2L 4819566 intergenic not near genes chr2L 4819637 intergenic not near genes chr2L_9_4815001 chr2L_4815001 RAL-325 51 chr2L 5001375 5001408 chr2L 5001539 5001572 11 163 0.5 3.0 1.8 3.9 197 chr2L 5001375 intron Rtnl1 - chr2L 5001474 intron Rtnl1 - chr2L 5001572 intron Rtnl1 - chr2L_11_5000001 chr2L_5000001 RAL-325 52 chr2L 5120977 5120987 chr2L 5121068 5121080 4 92 4.0 1.5 2.8 1.1 103 chr2L 5120977 intron Msp300 + chr2L 5121028 intron Msp300 + chr2L 5121080 intron Msp300 + chr2L_4_5120001 chr2L_5120001 RAL-325 53 chr2L 5303839 5303870 chr2L 5303926 5303939 8 77 4.0 3.0 3.5 1.8 100 chr2L 5303839 intron vri + chr2L 5303889 intron vri + chr2L 5303939 intron vri + chr2L_8_5300001 chr2L_5300001 RAL-325 54 chr2L 5378434 5378453 chr2L 5378513 5378530 5 79 2.0 2.0 2.0 1.7 96 chr2L 5378434 intergenic not near genes chr2L 5378482 intergenic not near genes chr2L 5378530 intergenic not near genes chr2L_5_5375001 chr2L_5375001 RAL-325 55 chr2L 5633319 5633336 chr2L 5633395 5633413 4 76 1.5 3.0 2.2 1.2 94 chr2L 5633319 intron CG31646 - chr2L 5633366 intron CG31646 - chr2L 5633413 intron CG31646 - chr2L_4_5630001 chr2L_5630001 RAL-325 56 chr2L 5749895 5749929 chr2L 5749974 5749987 8 70 2.0 3.5 2.8 2.1 92 chr2L 5749895 intron CG11030 + chr2L 5749941 intron CG11030 + chr2L 5749987 intron CG11030 + chr2L_8_5745001 chr2L_5745001 RAL-325 57 chr2L 5819677 5819703 chr2L 5819761 5819787 7 83 1.5 1.5 1.5 2.8 110 chr2L 5819677 intergenic not near genes chr2L 5819732 intergenic not near genes chr2L 5819787 intergenic not near genes chr2L_7_5815001 chr2L_5815001 RAL-325 58 chr2L 5825073 5825101 chr2L 5825156 5825193 4 83 1.0 0.0 0.5 2.7 120 chr2L 5825073 5` UTR TrissinR + chr2L 5825133 5` UTR TrissinR + chr2L 5825193 5` UTR TrissinR + chr2L_4_5825001 chr2L_5825001 RAL-325 59 chr2L 5887602 5887633 chr2L 5887683 5887713 6 81 2.0 2.5 2.2 1.9 111 chr2L 5887602 3` UTR CR44577 - chr2L 5887658 3` UTR CR44577 - chr2L 5887713 3` UTR CR44577 - chr2L_6_5885001 chr2L_5885001 RAL-325 60 chr2L 5897596 5897628 chr2L 5897677 5897694 12 78 4.5 7.0 5.8 1.8 98 chr2L 5897596 intergenic not near genes chr2L 5897645 intergenic not near genes chr2L 5897694 intergenic not near genes chr2L_12_5895001 chr2L_5895001 RAL-325 61 chr2L 5944552 5944578 chr2L 5948994 5949020 5 4442 33.0 10.5 21.8 0.2 4468 chr2L 5944552 intron Gpdh + chr2L 5946786 intron Gpdh + chr2L 5949020 intergenic Gpdh +,CG9044 + chr2L_5_5945001 chr2L_5945001 RAL-325 62 chr2L 6078173 6078188 chr2L 6078250 6078271 8 80 3.0 3.5 3.2 1.9 98 chr2L 6078173 intergenic CR9162 + chr2L 6078222 intergenic CR9162 + chr2L 6078271 intergenic CR9162 + chr2L_8_6075001 chr2L_6075001 RAL-325 63 chr2L 6363160 6363183 chr2L 6366073 6366073 Burdock 5 2907 1.5 2.5 2.0 1.7 2913 chr2L 6363160 intergenic not near genes chr2L 6364616 intergenic not near genes chr2L 6366073 intergenic not near genes chr2L_5_6360001 chr2L_6360001 RAL-325 64 chr2L 6426856 6426883 chr2L 6445114 6445141 roo 10 18258 4.0 3.0 3.5 2.2 18285 chr2L 6426856 3` UTR CG9527 - chr2L 6435998 intron CG9527 - chr2L 6445141 exon CG9527 - chr2L_10_6435001 chr2L_6435001 RAL-325 65 chr2L 6891449 6891469 chr2L 6891546 6891558 6 92 0.5 1.0 0.8 3.3 109 chr2L 6891449 intron Nlg2 + chr2L 6891504 intron Nlg2 + chr2L 6891558 intron Nlg2 + chr2L_6_6890001 chr2L_6890001 RAL-325 66 chr2L 7335210 7335233 chr2L 7335306 7335329 6 96 2.0 1.0 1.5 2.4 119 chr2L 7335210 intron Wnt6 + chr2L 7335270 intron Wnt6 + chr2L 7335329 intron Wnt6 + chr2L_6_7335001 chr2L_7335001 RAL-325 67 chr2L 7399312 7399328 chr2L 7399684 7399695 4 371 1.5 3.5 2.5 1.1 383 chr2L 7399312 intergenic not near genes chr2L 7399504 intergenic not near genes chr2L 7399695 intergenic not near genes chr2L_4_7395001 chr2L_7395001 RAL-325 68 chr2L 7405779 7405784 chr2L 7405857 7405864 5 79 4.0 0.0 2.0 1.7 85 chr2L 7405779 intron CG5177 + chr2L 7405822 intron CG5177 + chr2L 7405864 intron CG5177 + chr2L_5_7405001 chr2L_7405001 RAL-325 69 chr2L 7437183 7437212 chr2L 7437263 7437291 8 78 0.0 0.5 0.2 6.7 108 chr2L 7437183 intergenic CG5973 + chr2L 7437237 intergenic CG5973 + chr2L 7437291 intergenic CG5973 + chr2L_8_7435001 chr2L_7435001 RAL-325 70 chr2L 7473332 7473338 chr2L 7473513 7473522 4 179 11.0 20.5 15.8 0.2 190 chr2L 7473332 intron Ziz - chr2L 7473427 intron Ziz - chr2L 7473522 intron Ziz - chr2L_4_7470001 chr2L_7470001 RAL-325 71 chr2L 7867565 7867602 chr2L 7867659 7867679 8 89 0.0 1.0 0.5 5.3 114 chr2L 7867565 intron Proc - chr2L 7867622 intron Proc - chr2L 7867679 intron Proc - chr2L_8_7865001 chr2L_7865001 RAL-325 72 chr2L 7922742 7922767 chr2L 7922823 7922848 9 78 4.0 3.0 3.5 2.0 106 chr2L 7922742 intron Snoo - chr2L 7922795 intron Snoo - chr2L 7922848 intron Snoo - chr2L_9_7920001 chr2L_7920001 RAL-325 73 chr2L 8003045 8003069 chr2L 8003127 8003151 4 82 1.5 1.5 1.5 1.6 106 chr2L 8003045 intron Wwox - chr2L 8003098 intron Wwox - chr2L 8003151 intron Wwox - chr2L_4_8000001 chr2L_8000001 RAL-325 74 chr2L 8013617 8013633 chr2L 8018821 8018837 copia 6 5203 2.5 0.0 1.2 2.7 5220 chr2L 8013617 intron Tg + chr2L 8016227 intron Tg + chr2L 8018837 intron Tg + chr2L_6_8015001 chr2L_8015001 RAL-325 75 chr2L 8502670 8502689 chr2L 8502753 8502757 4 80 1.5 4.0 2.8 1.1 87 chr2L 8502670 intron Dh31 - chr2L 8502714 intron Dh31 - chr2L 8502757 intron Dh31 - chr2L_4_8500001 chr2L_8500001 RAL-325 76 chr2L 8742766 8742784 chr2L 8742842 8742860 4 76 1.0 0.0 0.5 2.7 94 chr2L 8742766 intergenic not near genes chr2L 8742813 intergenic not near genes chr2L 8742860 intergenic not near genes chr2L_4_8740001 chr2L_8740001 RAL-325 77 chr2L 8803193 8803204 chr2L 8803269 8803276 5 80 3.0 0.5 1.8 1.8 83 chr2L 8803193 intergenic not near genes chr2L 8803234 intergenic not near genes chr2L 8803276 intergenic not near genes chr2L_5_8800001 chr2L_8800001 RAL-325 78 chr2L 9000286 9000310 chr2L 9007795 9007820 roo 6 7510 1.5 2.5 2.0 2.0 7534 chr2L 9000286 intergenic Try29F + chr2L 9004053 intergenic not near genes chr2L 9007820 intergenic not near genes chr2L_6_9000001 chr2L_9000001 RAL-325 79 chr2L 9053415 9053426 chr2L 9053650 9053659 4 234 0.5 1.0 0.8 2.2 244 chr2L 9053415 exon CG31708 - chr2L 9053537 intron CG31708 - chr2L 9053659 intron CG31708 - chr2L_4_9050001 chr2L_9050001 RAL-325 80 chr2L 9084336 9084340 chr2L 16217660 16217660 7 7133322 7.0 4.5 5.8 1.0 7133324 chr2L 9084336 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_7_12650001 chr2L_12650001 RAL-325 81 chr2L 9251161 9251177 chr2L 9251245 9251264 7 90 4.0 2.5 3.2 1.7 103 chr2L 9251161 intergenic aust -,borr - chr2L 9251212 intergenic aust -,borr - chr2L 9251264 intergenic borr -,aust - chr2L_7_9250001 chr2L_9250001 RAL-325 82 chr2L 9280008 9280024 chr2L 9280098 9280118 4 92 0.5 2.0 1.2 1.8 110 chr2L 9280008 intron Ggamma30A + chr2L 9280063 intron Ggamma30A + chr2L 9280118 intron Ggamma30A + chr2L_4_9280001 chr2L_9280001 RAL-325 83 chr2L 9393496 9393530 chr2L 9396463 9396497 jockey 8 2964 0.0 2.0 1.0 4.0 3001 chr2L 9393496 intron Shawl - chr2L 9394996 intron Shawl - chr2L 9396497 intron Shawl - chr2L_8_9390001 chr2L_9390001 RAL-325 84 chr2L 9416804 9416824 chr2L 9416883 9416912 6 85 2.5 1.5 2.0 2.0 108 chr2L 9416804 intron Mco1 + chr2L 9416858 intron Mco1 + chr2L 9416912 intron Mco1 + chr2L_6_9415001 chr2L_9415001 RAL-325 85 chr2L 9454978 9455007 chr2L 9455080 9455109 4 102 1.5 0.0 0.8 2.2 131 chr2L 9454978 intron numb + chr2L 9455044 intron numb + chr2L 9455109 intron numb + chr2L_4_9455001 chr2L_9455001 RAL-325 86 chr2L 9490524 9490549 chr2L 9490602 9490626 5 79 3.5 2.5 3.0 1.2 102 chr2L 9490524 intergenic not near genes chr2L 9490575 intergenic not near genes chr2L 9490626 intergenic not near genes chr2L_5_9490001 chr2L_9490001 RAL-325 87 chr2L 9598784 9598804 chr2L 9598859 9598881 4 76 3.5 1.5 2.5 1.1 97 chr2L 9598784 intergenic CG4382 - chr2L 9598832 intergenic CG4382 - chr2L 9598881 3` UTR CG4382 - chr2L_4_9595001 chr2L_9595001 RAL-325 88 chr2L 9883160 9883170 chr2L 9883255 9883266 6 96 1.5 0.0 0.8 3.3 106 chr2L 9883160 intron nAChRalpha6 - chr2L 9883213 intron nAChRalpha6 - chr2L 9883266 intron nAChRalpha6 - chr2L_6_9880001 chr2L_9880001 RAL-325 89 chr2L 9973726 9973755 chr2L 9980845 9980868 HMS-Beagle 14 7114 2.5 3.0 2.8 3.7 7142 chr2L 9973726 intergenic not near genes chr2L 9977297 intergenic not near genes chr2L 9980868 intergenic not near genes chr2L_14_9975001 chr2L_9975001 RAL-325 90 chr2L 10051724 10051753 chr2L 10051809 10051833 7 80 4.0 2.5 3.2 1.7 109 chr2L 10051724 5` UTR CR44874 + chr2L 10051778 5` UTR CR44874 + chr2L 10051833 5` UTR CR44874 + chr2L_7_10050001 chr2L_10050001 RAL-325 91 chr2L 10129182 10129196 chr2L 10129275 10129290 4 92 0.5 1.5 1.0 2.0 108 chr2L 10129182 intron CG44153 - chr2L 10129236 intron CG44153 - chr2L 10129290 intron CG44153 - chr2L_4_10125001 chr2L_10125001 RAL-325 92 chr2L 10153212 10153237 chr2L 10153288 10153316 8 75 3.0 2.5 2.8 2.1 104 chr2L 10153212 intron,exon CG44153 -,CG4839 + chr2L 10153264 intron,intron CG44153 -,CG4839 + chr2L 10153316 intron,intron CG44153 -,CG4839 + chr2L_8_10150001 chr2L_10150001 RAL-325 93 chr2L 10156329 10156352 chr2L 10163796 10163822 blood 4 7468 1.5 3.0 2.2 1.2 7493 chr2L 10156329 intron,3` UTR CG44153 -,CG4839 + chr2L 10160076 intron CG44153 - chr2L 10163822 intron CG44153 - chr2L_4_10160001 chr2L_10160001 RAL-325 94 chr2L 10421309 10421323 chr2L 10421373 10421383 5 64 7.0 3.0 5.0 0.8 74 chr2L 10421309 exon pie - chr2L 10421346 exon pie - chr2L 10421383 exon pie - chr2L_5_10420001 chr2L_10420001 RAL-325 95 chr2L 10579050 10579079 chr2L 10579139 10579161 5 87 1.0 2.5 1.8 1.8 111 chr2L 10579050 intron Trim9 + chr2L 10579106 intron Trim9 + chr2L 10579161 intron Trim9 + chr2L_5_10575001 chr2L_10575001 RAL-325 96 chr2L 10580801 10580821 chr2L 10580878 10580902 4 79 0.5 2.0 1.2 1.8 101 chr2L 10580801 intron Trim9 + chr2L 10580852 intron Trim9 + chr2L 10580902 intron Trim9 + chr2L_4_10580001 chr2L_10580001 RAL-325 97 chr2L 10592841 10592861 chr2L 10600503 10600516 opus 4 7659 2.5 0.5 1.5 1.6 7675 chr2L 10592841 intron Trim9 + chr2L 10596678 intron Trim9 + chr2L 10600516 intron Trim9 + chr2L_4_10595001 chr2L_10595001 RAL-325 98 chr2L 10640639 10640661 chr2L 10640727 10640749 9 87 6.0 1.0 3.5 2.0 110 chr2L 10640639 exon CG31872 + chr2L 10640694 exon CG31872 + chr2L 10640749 exon CG31872 + chr2L_9_10640001 chr2L_10640001 RAL-325 99 chr2L 10704925 10704938 chr2L 10705019 10705025 5 93 5.0 5.0 5.0 0.8 100 chr2L 10704925 intron,3` UTR Lip2 -,CG6415 + chr2L 10704975 intron Lip2 - chr2L 10705025 intron Lip2 - chr2L_5_10700001 chr2L_10700001 RAL-325 100 chr2L 10705914 10705937 chr2L 10706057 10706080 5 142 1.5 0.5 1.0 2.5 166 chr2L 10705914 intron Lip2 - chr2L 10705997 intron Lip2 - chr2L 10706080 intron Lip2 - chr2L_5_10705001 chr2L_10705001 RAL-325 101 chr2L 10711266 10711290 chr2L 10711344 10711368 6 77 6.5 2.5 4.5 1.1 102 chr2L 10711266 intergenic not near genes chr2L 10711317 intergenic not near genes chr2L 10711368 intergenic not near genes chr2L_6_10710001 chr2L_10710001 RAL-325 102 chr2L 10745167 10745178 chr2L 10748594 10748594 4 3425 8.5 1.5 5.0 0.7 3427 chr2L 10745167 3` UTR CG17124 - chr2L 10746880 intron CG17124 - chr2L 10748594 intron CG17124 - chr2L_4_10745001 chr2L_10745001 RAL-325 103 chr2L 10745164 10745177 chr2L 10748569 10748603 6 3411 8.5 0.5 4.5 1.1 3439 chr2L 10745164 3` UTR CG17124 - chr2L 10746884 intron CG17124 - chr2L 10748603 intron CG17124 - chr2L_6_10745001 chr2L_10745001 RAL-325 104 chr2L 10762413 10762432 chr2L 10762490 10762508 5 76 3.0 3.5 3.2 1.2 95 chr2L 10762413 intron CG6495 + chr2L 10762460 intron CG6495 + chr2L 10762508 intron CG6495 + chr2L_5_10760001 chr2L_10760001 RAL-325 105 chr2L 10862846 10862880 chr2L 10864458 10864476 Rt1c 6 1607 3.0 3.0 3.0 1.5 1630 chr2L 10862846 3` UTR CR43807 - chr2L 10863661 intron CR43807 - chr2L 10864476 3` UTR CR43807 - chr2L_6_10860001 chr2L_10860001 RAL-325 106 chr2L 11183788 11183805 chr2L 11183884 11183901 5 94 2.5 3.5 3.0 1.2 113 chr2L 11183788 intron Ca-beta - chr2L 11183844 intron Ca-beta - chr2L 11183901 intron Ca-beta - chr2L_5_11180001 chr2L_11180001 RAL-325 107 chr2L 11238641 11238662 chr2L 11238795 11238816 4 152 3.5 2.0 2.8 1.1 175 chr2L 11238641 intron ab + chr2L 11238728 intron ab + chr2L 11238816 intron ab + chr2L_4_11235001 chr2L_11235001 RAL-325 108 chr2L 11356413 11356418 chr2L 11356523 11356528 4 110 3.0 1.5 2.2 1.2 115 chr2L 11356413 intergenic not near genes chr2L 11356470 intergenic not near genes chr2L 11356528 intergenic not near genes chr2L_4_11355001 chr2L_11355001 RAL-325 109 chr2L 11357995 11358012 chr2L 11358069 11358090 4 77 0.0 1.0 0.5 2.7 95 chr2L 11357995 intergenic not near genes chr2L 11358042 intergenic not near genes chr2L 11358090 intergenic not near genes chr2L_4_11355001 chr2L_11355001 RAL-325 110 chr2L 11380615 11380638 chr2L 11380691 11380698 4 72 2.5 2.0 2.2 1.2 83 chr2L 11380615 intergenic not near genes chr2L 11380656 intergenic not near genes chr2L 11380698 intergenic not near genes chr2L_4_11380001 chr2L_11380001 RAL-325 111 chr2L 11404788 11404808 chr2L 11404860 11404882 9 75 1.5 3.0 2.2 2.8 94 chr2L 11404788 intergenic not near genes chr2L 11404835 intergenic not near genes chr2L 11404882 intergenic not near genes chr2L_9_11400001 chr2L_11400001 RAL-325 112 chr2L 11491129 11491151 chr2L 11491209 11491225 4 77 2.5 1.0 1.8 1.4 96 chr2L 11491129 intergenic not near genes chr2L 11491177 intergenic not near genes chr2L 11491225 intergenic not near genes chr2L_4_11490001 chr2L_11490001 RAL-325 113 chr2L 11540581 11540607 chr2L 11547983 11548008 Tabor 5 7401 1.0 2.0 1.5 2.0 7427 chr2L 11540581 intergenic not near genes chr2L 11544294 intergenic not near genes chr2L 11548008 intergenic not near genes chr2L_5_11540001 chr2L_11540001 RAL-325 114 chr2L 11614065 11614085 chr2L 11615551 11615551 hopper2 4 1475 1.0 2.5 1.8 1.4 1486 chr2L 11614065 intron kek2 + chr2L 11614808 intron kek2 + chr2L 11615551 intron kek2 + chr2L_4_11610001 chr2L_11610001 RAL-325 115 chr2L 11713505 11713538 chr2L 11720973 11721005 blood 6 7466 2.5 1.0 1.8 2.1 7500 chr2L 11713505 intergenic not near genes chr2L 11717255 intergenic not near genes chr2L 11721005 intergenic CR44143 + chr2L_6_11715001 chr2L_11715001 RAL-325 116 chr2L 11820435 11820464 chr2L 11820516 11820545 13 80 2.0 5.5 3.8 2.7 110 chr2L 11820435 intron Pde1c - chr2L 11820490 intron Pde1c - chr2L 11820545 intron Pde1c - chr2L_13_11820001 chr2L_11820001 RAL-325 117 chr2L 11873268 11873275 chr2L 11873477 11873488 6 210 10.0 1.5 5.8 0.9 220 chr2L 11873268 intron Pde1c - chr2L 11873378 intron Pde1c - chr2L 11873488 intron Pde1c - chr2L_6_11870001 chr2L_11870001 RAL-325 118 chr2L 11873279 11873292 chr2L 11873476 11873502 5 207 5.5 1.0 3.2 1.2 223 chr2L 11873279 intron Pde1c - chr2L 11873390 intron Pde1c - chr2L 11873502 intron Pde1c - chr2L_5_11870001 chr2L_11870001 RAL-325 119 chr2L 11941753 11941784 chr2L 11942526 11942553 8 771 16.0 8.5 12.2 0.6 800 chr2L 11941753 intergenic not near genes chr2L 11942153 intergenic not near genes chr2L 11942553 intergenic not near genes chr2L_8_11940001 chr2L_11940001 RAL-325 120 chr2L 12067330 12067361 chr2L 12074382 12074411 297 4 7052 1.0 1.0 1.0 2.0 7081 chr2L 12067330 intergenic not near genes chr2L 12070870 intergenic not near genes chr2L 12074411 intergenic not near genes chr2L_4_12070001 chr2L_12070001 RAL-325 121 chr2L 12132729 12132748 chr2L 12132815 12132834 5 86 2.5 1.5 2.0 1.7 105 chr2L 12132729 intron rho-6 - chr2L 12132782 intron rho-6 - chr2L 12132834 intron rho-6 - chr2L_5_12130001 chr2L_12130001 RAL-325 122 chr2L 12176215 12176238 chr2L 12176296 12176318 6 81 2.0 2.0 2.0 2.0 103 chr2L 12176215 intron,intron aret +,atilla - chr2L 12176266 intron,intron aret +,atilla - chr2L 12176318 intron,intron aret +,atilla - chr2L_6_12175001 chr2L_12175001 RAL-325 123 chr2L 12196781 12196800 chr2L 12197294 12197312 4 510 1.0 1.0 1.0 2.0 531 chr2L 12196781 intron aret + chr2L 12197046 intron aret + chr2L 12197312 intron aret + chr2L_4_12195001 chr2L_12195001 RAL-325 124 chr2L 12272169 12272191 chr2L 12272243 12272266 8 75 0.5 0.5 0.5 5.3 97 chr2L 12272169 intron aret + chr2L 12272218 intron aret + chr2L 12272266 intron aret + chr2L_8_12270001 chr2L_12270001 RAL-325 125 chr2L 12277262 12277262 chr2L 12277849 12277877 5 594 10.0 22.0 16.0 0.3 615 chr2L 12277262 intron aret + chr2L 12277570 intron aret + chr2L 12277877 intron aret + chr2L_5_12275001 chr2L_12275001 RAL-325 126 chr2L 12409123 12409137 chr2L 12409207 12409235 9 96 2.0 2.0 2.0 3.0 112 chr2L 12409123 intron vir-1 - chr2L 12409179 intron vir-1 - chr2L 12409235 intron vir-1 - chr2L_9_12405001 chr2L_12405001 RAL-325 127 chr2L 12426143 12426163 chr2L 12426220 12426246 8 78 1.0 3.0 2.0 2.7 103 chr2L 12426143 exon CG6405 + chr2L 12426194 exon CG6405 + chr2L 12426246 exon CG6405 + chr2L_8_12425001 chr2L_12425001 RAL-325 128 chr2L 12558323 12558346 chr2L 12565447 12565474 HMS-Beagle 4 7128 0.5 1.0 0.8 2.2 7151 chr2L 12558323 intergenic not near genes chr2L 12561898 intergenic not near genes chr2L 12565474 intergenic not near genes chr2L_4_12560001 chr2L_12560001 RAL-325 129 chr2L 12686971 12687006 chr2L 12687086 12687121 4 107 0.5 2.5 1.5 1.6 150 chr2L 12686971 intergenic not near genes chr2L 12687046 intergenic not near genes chr2L 12687121 intergenic not near genes chr2L_4_12685001 chr2L_12685001 RAL-325 130 chr2L 12728930 12728950 chr2L 12729162 12729171 pogo 8 237 2.0 1.0 1.5 3.2 241 chr2L 12728930 intron MRP + chr2L 12729050 intron MRP + chr2L 12729171 intron MRP + chr2L_8_12725001 chr2L_12725001 RAL-325 131 chr2L 12739183 12739205 chr2L 12743958 12743984 Doc 9 4779 0.5 2.0 1.2 4.1 4801 chr2L 12739183 exon MRP + chr2L 12741584 intron MRP + chr2L 12743984 exon MRP + chr2L_9_12740001 chr2L_12740001 RAL-325 132 chr2L 12751311 12751334 chr2L 12751394 12751417 4 81 1.0 2.5 1.8 1.4 106 chr2L 12751311 intergenic not near genes chr2L 12751364 intergenic not near genes chr2L 12751417 intergenic not near genes chr2L_4_12750001 chr2L_12750001 RAL-325 133 chr2L 12861700 12861730 chr2L 12863167 12863176 hobo 5 1462 1.0 1.0 1.0 2.5 1476 chr2L 12861700 intergenic not near genes chr2L 12862438 intergenic not near genes chr2L 12863176 intergenic not near genes chr2L_5_12860001 chr2L_12860001 RAL-325 134 chr2L 12905479 12905507 chr2L 12905563 12905591 4 84 1.0 0.0 0.5 2.7 112 chr2L 12905479 intergenic not near genes chr2L 12905535 intergenic not near genes chr2L 12905591 intergenic not near genes chr2L_4_12905001 chr2L_12905001 RAL-325 135 chr2L 12933849 12933877 chr2L 12941316 12941343 blood 7 7464 3.0 2.0 2.5 2.0 7494 chr2L 12933849 intergenic not near genes chr2L 12937596 intergenic not near genes chr2L 12941343 intergenic not near genes chr2L_7_12935001 chr2L_12935001 RAL-325 136 chr2L 13405654 13405678 chr2L 13410448 13410474 Doc 16 4795 3.5 5.0 4.2 3.1 4820 chr2L 13405654 exon CG7110 + chr2L 13408064 intron CG7110 + chr2L 13410474 intron CG7110 + chr2L_16_13405001 chr2L_13405001 RAL-325 137 chr2L 13699574 13699587 chr2L 13699632 13699663 5 70 2.0 2.0 2.0 1.7 89 chr2L 13699574 intron CG31814 - chr2L 13699618 intron CG31814 - chr2L 13699663 intron CG31814 - chr2L_5_13695001 chr2L_13695001 RAL-325 138 chr2L 13705588 13705606 chr2L 13705682 13705706 6 98 3.5 2.0 2.8 1.6 118 chr2L 13705588 intron CG31814 - chr2L 13705647 intron CG31814 - chr2L 13705706 intron CG31814 - chr2L_6_13705001 chr2L_13705001 RAL-325 139 chr2L 13720051 13720079 chr2L 13720127 13720155 5 76 3.0 2.0 2.5 1.4 104 chr2L 13720051 intergenic not near genes chr2L 13720103 intergenic not near genes chr2L 13720155 intergenic not near genes chr2L_5_13720001 chr2L_13720001 RAL-325 140 chr2L 13761814 13761834 chr2L 13762925 13762945 Doc 6 1110 5.0 3.0 4.0 1.2 1131 chr2L 13761814 intron TM9SF4 + chr2L 13762380 intron TM9SF4 + chr2L 13762945 intron TM9SF4 + chr2L_6_13760001 chr2L_13760001 RAL-325 141 chr2L 13851682 13851711 chr2L 13851787 13851817 7 106 0.0 0.5 0.2 5.8 135 chr2L 13851682 intron CenG1A + chr2L 13851750 intron CenG1A + chr2L 13851817 intron CenG1A + chr2L_7_13850001 chr2L_13850001 RAL-325 142 chr2L 14109520 14109545 chr2L 14109611 14109634 4 90 2.0 3.5 2.8 1.1 114 chr2L 14109520 intergenic CG15293 -,CG31769 - chr2L 14109577 intergenic CG31769 -,CG15293 - chr2L 14109634 3` UTR CG31769 - chr2L_4_14105001 chr2L_14105001 RAL-325 143 chr2L 14549158 14549177 chr2L 14549234 14549252 5 75 2.0 4.0 3.0 1.2 94 chr2L 14549158 intergenic CG4218 - chr2L 14549205 intergenic CG4218 - chr2L 14549252 intergenic CG4218 - chr2L_5_14545001 chr2L_14545001 RAL-325 144 chr2L 14588389 14588407 chr2L 14588543 14588552 5 151 2.5 0.5 1.5 2.0 163 chr2L 14588389 intergenic CG42680 - chr2L 14588470 intergenic CG42680 - chr2L 14588552 intergenic CG42680 - chr2L_5_14585001 chr2L_14585001 RAL-325 145 chr2L 14590198 14590214 chr2L 14590278 14590288 4 78 4.0 3.0 3.5 0.9 90 chr2L 14590198 intergenic not near genes chr2L 14590243 intergenic not near genes chr2L 14590288 intergenic not near genes chr2L_4_14590001 chr2L_14590001 RAL-325 146 chr2L 14601984 14602002 chr2L 14602067 14602086 10 82 3.0 2.5 2.8 2.6 102 chr2L 14601984 exon osp - chr2L 14602035 intron osp - chr2L 14602086 intron osp - chr2L_10_14600001 chr2L_14600001 RAL-325 147 chr2L 14978210 14978235 chr2L 14978385 14978408 5 174 0.0 2.0 1.0 2.5 198 chr2L 14978210 intron mol - chr2L 14978309 intron mol - chr2L 14978408 intron mol - chr2L_5_14975001 chr2L_14975001 RAL-325 148 chr2L 15021413 15021430 chr2L 15021620 15021634 5 206 5.0 0.0 2.5 1.4 221 chr2L 15021413 intron GABA-B-R1 + chr2L 15021524 intron GABA-B-R1 + chr2L 15021634 intron GABA-B-R1 + chr2L_5_15020001 chr2L_15020001 RAL-325 149 chr2L 15026028 15026050 chr2L 15026102 15026131 8 79 3.0 3.5 3.2 1.9 103 chr2L 15026028 exon GABA-B-R1 + chr2L 15026080 intron GABA-B-R1 + chr2L 15026131 intron GABA-B-R1 + chr2L_8_15025001 chr2L_15025001 RAL-325 150 chr2L 15044718 15044741 chr2L 15044794 15044817 5 76 0.0 0.0 0.0 5.0 99 chr2L 15044718 intergenic ck - chr2L 15044768 intergenic ck - chr2L 15044817 intergenic ck - chr2L_5_15040001 chr2L_15040001 RAL-325 151 chr2L 15226380 15226396 chr2L 15226452 15226472 4 71 0.5 2.5 1.5 1.6 92 chr2L 15226380 intergenic not near genes chr2L 15226426 intergenic not near genes chr2L 15226472 intergenic not near genes chr2L_4_15225001 chr2L_15225001 RAL-325 152 chr2L 15242526 15242556 chr2L 15242602 15242632 12 74 4.5 2.5 3.5 2.7 106 chr2L 15242526 intron ZnT35C - chr2L 15242579 intron ZnT35C - chr2L 15242632 intron ZnT35C - chr2L_12_15240001 chr2L_15240001 RAL-325 153 chr2L 15343539 15343727 chr2L 15343624 15343814 7 82 0.0 0.0 0.0 7.0 275 chr2L 15343539 intergenic not near genes chr2L 15343676 intergenic not near genes chr2L 15343814 intergenic not near genes chr2L_7_15340001 chr2L_15340001 RAL-325 154 chr2L 15385437 15385475 chr2L 15385515 15385551 5 77 3.5 0.0 1.8 1.8 114 chr2L 15385437 intergenic not near genes chr2L 15385494 intergenic not near genes chr2L 15385551 intergenic not near genes chr2L_5_15385001 chr2L_15385001 RAL-325 155 chr2L 15446068 15446081 chr2L 15453537 15453544 blood 4 7467 1.5 0.5 1.0 2.0 7476 chr2L 15446068 intergenic not near genes chr2L 15449806 intergenic not near genes chr2L 15453544 intergenic not near genes chr2L_4_15445001 chr2L_15445001 RAL-325 156 chr2L 15623625 15623652 chr2L 15623714 15623720 5 80 1.0 0.5 0.8 2.8 95 chr2L 15623625 intergenic Or35a - chr2L 15623672 intergenic Or35a - chr2L 15623720 intergenic Or35a - chr2L_5_15620001 chr2L_15620001 RAL-325 157 chr2L 15743321 15743339 chr2L 15743394 15743415 5 76 2.5 3.0 2.8 1.3 94 chr2L 15743321 intron CycE - chr2L 15743368 intron CycE - chr2L 15743415 intron CycE - chr2L_5_15740001 chr2L_15740001 RAL-325 158 chr2L 15887722 15887732 chr2L 15887852 15887865 5 132 2.0 1.0 1.5 2.0 143 chr2L 15887722 intergenic not near genes chr2L 15887794 intergenic not near genes chr2L 15887865 intergenic not near genes chr2L_5_15885001 chr2L_15885001 RAL-325 159 chr2L 15906185 15906213 chr2L 15906274 15906300 8 84 1.5 1.5 1.5 3.2 115 chr2L 15906185 intron beat-Ib - chr2L 15906242 intron beat-Ib - chr2L 15906300 intron beat-Ib - chr2L_8_15905001 chr2L_15905001 RAL-325 160 chr2L 15950384 15950411 chr2L 15950462 15950468 4 72 0.5 1.0 0.8 2.2 84 chr2L 15950384 intron beat-Ib - chr2L 15950426 intron beat-Ib - chr2L 15950468 intron beat-Ib - chr2L_4_15950001 chr2L_15950001 RAL-325 161 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 7 145889 8.5 4.5 6.5 0.9 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_7_16140001 chr2L_16140001 RAL-325 162 chr2L 16098931 16098941 chr2L 16099018 16099025 4 86 3.0 1.5 2.2 1.2 94 chr2L 16098931 intergenic not near genes chr2L 16098978 intergenic not near genes chr2L 16099025 intergenic not near genes chr2L_4_16095001 chr2L_16095001 RAL-325 163 chr2L 16141167 16141187 chr2L 16146374 16146393 copia 6 5206 2.0 0.5 1.2 2.7 5226 chr2L 16141167 intergenic not near genes chr2L 16143780 intergenic not near genes chr2L 16146393 intergenic not near genes chr2L_6_16140001 chr2L_16140001 RAL-325 164 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 4 145889 8.5 4.5 6.5 0.5 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_4_16140001 chr2L_16140001 RAL-325 165 chr2L 16254893 16254915 chr2L 16255152 16255174 4 258 2.0 4.0 3.0 1.0 281 chr2L 16254893 intron PRL-1 - chr2L 16255034 intron PRL-1 - chr2L 16255174 intron PRL-1 - chr2L_4_16255001 chr2L_16255001 RAL-325 166 chr2L 16280258 16280280 chr2L 16281426 16281433 1360 5 1165 2.0 4.0 3.0 1.2 1175 chr2L 16280258 intron crp - chr2L 16280846 intron crp - chr2L 16281433 intron crp - chr2L_5_16280001 chr2L_16280001 RAL-325 167 chr2L 16480140 16480170 chr2L 16480545 16480577 10 403 2.0 1.0 1.5 4.0 437 chr2L 16480140 intron dac - chr2L 16480358 intron dac - chr2L 16480577 intron dac - chr2L_10_16480001 chr2L_16480001 RAL-325 168 chr2L 16498162 16498174 chr2L 16498336 16498354 6 178 0.0 1.5 0.8 3.3 192 chr2L 16498162 intron Tpr2 + chr2L 16498258 intron Tpr2 + chr2L 16498354 intron Tpr2 + chr2L_6_16495001 chr2L_16495001 RAL-325 169 chr2L 16616590 16616615 chr2L 16616669 16616698 8 80 2.5 6.0 4.2 1.5 108 chr2L 16616590 intron CG42389 + chr2L 16616644 intron CG42389 + chr2L 16616698 intron CG42389 + chr2L_8_16615001 chr2L_16615001 RAL-325 170 chr2L 16721029 16721060 chr2L 16721106 16721136 6 76 4.5 1.5 3.0 1.5 107 chr2L 16721029 intron Cyt-c-p + chr2L 16721082 intron Cyt-c-p + chr2L 16721136 intron Cyt-c-p + chr2L_6_16720001 chr2L_16720001 RAL-325 171 chr2L 16952688 16952715 chr2L 16952797 16952824 5 106 1.5 1.5 1.5 2.0 136 chr2L 16952688 intergenic not near genes chr2L 16952756 intergenic not near genes chr2L 16952824 intergenic not near genes chr2L_5_16950001 chr2L_16950001 RAL-325 172 chr2L 16958102 16958135 chr2L 16962890 16962923 Doc 6 4787 0.0 4.0 2.0 2.0 4821 chr2L 16958102 intergenic not near genes chr2L 16960512 intergenic not near genes chr2L 16962923 intergenic not near genes chr2L_6_16960001 chr2L_16960001 RAL-325 173 chr2L 17005416 17005435 chr2L 17005513 17005531 4 96 1.5 3.0 2.2 1.2 115 chr2L 17005416 intergenic not near genes chr2L 17005474 intergenic not near genes chr2L 17005531 intergenic not near genes chr2L_4_17005001 chr2L_17005001 RAL-325 174 chr2L 17129841 17129860 chr2L 17129946 17129965 4 104 2.5 0.0 1.2 1.8 124 chr2L 17129841 intergenic not near genes chr2L 17129903 intergenic not near genes chr2L 17129965 intergenic not near genes chr2L_4_17125001 chr2L_17125001 RAL-325 175 chr2L 17167567 17167596 chr2L 17167805 17167837 pogo 5 240 0.5 0.0 0.2 4.2 270 chr2L 17167567 intron,intron CG34106 +,beat-IIIa + chr2L 17167702 intron,intron CG34106 +,beat-IIIa + chr2L 17167837 intron,intron CG34106 +,beat-IIIa + chr2L_5_17165001 chr2L_17165001 RAL-325 176 chr2L 17168200 17168226 chr2L 17168975 17168999 5 776 0.5 1.0 0.8 2.8 799 chr2L 17168200 intron,intron CG34106 +,beat-IIIa + chr2L 17168600 intron,intron CG34106 +,beat-IIIa + chr2L 17168999 intron,intron CG34106 +,beat-IIIa + chr2L_5_17165001 chr2L_17165001 RAL-325 177 chr2L 17240566 17240596 chr2L 17240653 17240682 10 86 1.5 2.0 1.8 3.6 116 chr2L 17240566 intron beat-IIIc - chr2L 17240624 intron beat-IIIc - chr2L 17240682 intron beat-IIIc - chr2L_10_17240001 chr2L_17240001 RAL-325 178 chr2L 17289234 17289251 chr2L 17289312 17289330 4 78 1.0 0.5 0.8 2.2 96 chr2L 17289234 intergenic not near genes chr2L 17289282 intergenic not near genes chr2L 17289330 intergenic not near genes chr2L_4_17285001 chr2L_17285001 RAL-325 179 chr2L 17353054 17353080 chr2L 17353131 17353158 4 77 1.5 0.0 0.8 2.2 104 chr2L 17353054 intergenic not near genes chr2L 17353106 intergenic not near genes chr2L 17353158 intergenic not near genes chr2L_4_17350001 chr2L_17350001 RAL-325 180 chr2L 17543597 17543622 chr2L 17543690 17543706 5 87 1.0 2.0 1.5 2.0 109 chr2L 17543597 intergenic not near genes chr2L 17543652 intergenic not near genes chr2L 17543706 intergenic not near genes chr2L_5_17540001 chr2L_17540001 RAL-325 181 chr2L 17834560 17834585 chr2L 17838450 17838475 8 3893 24.5 15.5 20.0 0.4 3915 chr2L 17834560 intron CadN2 - chr2L 17836518 intron CadN2 - chr2L 17838475 intron CadN2 - chr2L_8_17835001 chr2L_17835001 RAL-325 182 chr2L 17951944 17951980 chr2L 17953411 17953446 hobo 8 1465 2.5 3.0 2.8 2.1 1502 chr2L 17951944 intergenic CR44398 -,CR44397 - chr2L 17952695 intergenic not near genes chr2L 17953446 intergenic not near genes chr2L_8_17950001 chr2L_17950001 RAL-325 183 chr2L 18111245 18111268 chr2L 18111335 18111348 6 88 1.0 2.5 1.8 2.1 103 chr2L 18111245 intergenic not near genes chr2L 18111296 intergenic not near genes chr2L 18111348 intergenic not near genes chr2L_6_18110001 chr2L_18110001 RAL-325 184 chr2L 18274047 18274073 chr2L 18274133 18274158 6 86 1.0 2.0 1.5 2.4 111 chr2L 18274047 intron CG42750 - chr2L 18274102 intron CG42750 - chr2L 18274158 intron CG42750 - chr2L_6_18270001 chr2L_18270001 RAL-325 185 chr2L 18561562 18561575 chr2L 18561663 18561676 4 101 1.0 2.0 1.5 1.6 114 chr2L 18561562 intron Pde11 - chr2L 18561619 intron Pde11 - chr2L 18561676 intron Pde11 - chr2L_4_18560001 chr2L_18560001 RAL-325 186 chr2L 16217660 16217660 chr2L 18622702 18622719 4 2405054 5.5 1.5 3.5 0.9 2405059 chr2L 16217660 intergenic not near genes chr2L 17420190 intron Dif - chr2L 18622719 intron MESR3 + chr2L_4_17420001 chr2L_17420001 RAL-325 187 chr2L 18811405 18811434 chr2L 18811487 18811516 4 82 2.0 0.0 1.0 2.0 111 chr2L 18811405 intergenic CG10570 -,CG42502 - chr2L 18811460 intergenic CG10570 -,CG42502 - chr2L 18811516 intergenic not near genes chr2L_4_18810001 chr2L_18810001 RAL-325 188 chr2L 18812561 18812582 chr2L 18812822 18812843 4 262 0.0 3.0 1.5 1.6 282 chr2L 18812561 intergenic CG17325 +,CG42305 + chr2L 18812702 5` UTR,5` UTR CG17325 +,CG42305 + chr2L 18812843 5` UTR,5` UTR CG17325 +,CG42305 + chr2L_4_18810001 chr2L_18810001 RAL-325 189 chr2L 18883856 18883886 chr2L 18883938 18883966 8 80 2.5 4.0 3.2 1.9 110 chr2L 18883856 intergenic not near genes chr2L 18883911 intergenic not near genes chr2L 18883966 intergenic not near genes chr2L_8_18880001 chr2L_18880001 RAL-325 190 chr2L 18898416 18898425 chr2L 18898481 18898507 5 77 1.5 3.0 2.2 1.6 91 chr2L 18898416 intergenic not near genes chr2L 18898462 intergenic not near genes chr2L 18898507 intergenic not near genes chr2L_5_18895001 chr2L_18895001 RAL-325 191 chr2L 19070274 19070299 chr2L 19070364 19070392 5 89 2.5 3.0 2.8 1.3 118 chr2L 19070274 intergenic CG10702 - chr2L 19070333 intergenic CG10702 - chr2L 19070392 intergenic not near genes chr2L_5_19070001 chr2L_19070001 RAL-325 192 chr2L 19345015 19345047 chr2L 19357222 19357253 blood 6 12202 3.5 2.0 2.8 1.6 12238 chr2L 19345015 intron dnt - chr2L 19351134 intron dnt - chr2L 19357253 intron dnt - chr2L_6_19350001 chr2L_19350001 RAL-325 193 chr2L 19357548 19357554 chr2L 19357638 19357643 5 89 6.5 5.0 5.8 0.7 95 chr2L 19357548 intron dnt - chr2L 19357596 intron dnt - chr2L 19357643 intron dnt - chr2L_5_19355001 chr2L_19355001 RAL-325 194 chr2L 19393961 19393994 chr2L 19394074 19394102 6 112 6.0 8.5 7.2 0.7 141 chr2L 19393961 intron CG17544 - chr2L 19394032 intron CG17544 - chr2L 19394102 intron CG17544 - chr2L_6_19390001 chr2L_19390001 RAL-325 195 chr2L 19620093 19620128 chr2L 19621082 19621112 jockey 13 983 4.5 3.0 3.8 2.7 1019 chr2L 19620093 intron Lar + chr2L 19620602 intron Lar + chr2L 19621112 intron Lar + chr2L_13_19620001 chr2L_19620001 RAL-325 196 chr2L 19652585 19652595 chr2L 19674020 19674031 opus 4 21435 1.0 1.5 1.2 1.8 21446 chr2L 19652585 intron Lar + chr2L 19663308 intron Lar + chr2L 19674031 intron Lar + chr2L_4_19660001 chr2L_19660001 RAL-325 197 chr2L 19681446 19681461 chr2L 19681521 19681532 6 76 4.0 3.0 3.5 1.3 86 chr2L 19681446 intron Lar + chr2L 19681489 intron Lar + chr2L 19681532 intron Lar + chr2L_6_19680001 chr2L_19680001 RAL-325 198 chr2L 19703542 19703568 chr2L 19712677 19712697 roo 8 9134 1.0 5.0 3.0 2.0 9155 chr2L 19703542 intron Lar + chr2L 19708120 intron Lar + chr2L 19712697 intron Lar + chr2L_8_19705001 chr2L_19705001 RAL-325 199 chr2L 19762809 19762839 chr2L 19763050 19763081 pogo 11 240 0.5 2.0 1.2 5.0 272 chr2L 19762809 5` UTR fbp - chr2L 19762945 intron fbp - chr2L 19763081 intron fbp - chr2L_11_19760001 chr2L_19760001 RAL-325 200 chr2L 19794020 19794047 chr2L 19794102 19794127 4 82 4.5 4.0 4.2 0.8 107 chr2L 19794020 intron fs(2)ltoPP43 - chr2L 19794074 intron fs(2)ltoPP43 - chr2L 19794127 intron fs(2)ltoPP43 - chr2L_4_19790001 chr2L_19790001 RAL-325 201 chr2L 19888292 19888323 chr2L 19888372 19888403 6 79 5.0 6.0 5.5 0.9 111 chr2L 19888292 intron sick + chr2L 19888348 intron sick + chr2L 19888403 intron sick + chr2L_6_19885001 chr2L_19885001 RAL-325 202 chr2L 20272121 20272144 chr2L 20282831 20282853 copia 7 10711 4.5 3.5 4.0 1.4 10732 chr2L 20272121 intergenic not near genes chr2L 20277487 intergenic not near genes chr2L 20282853 intergenic not near genes chr2L_7_20275001 chr2L_20275001 RAL-325 203 chr2L 20299411 20299442 chr2L 20299534 20299565 7 119 0.0 2.5 1.2 3.2 154 chr2L 20299411 intergenic not near genes chr2L 20299488 intergenic not near genes chr2L 20299565 intergenic not near genes chr2L_7_20295001 chr2L_20295001 RAL-325 204 chr2L 20553185 20553216 chr2L 20553261 20553292 5 75 6.0 7.0 6.5 0.7 107 chr2L 20553185 intergenic not near genes chr2L 20553238 intergenic not near genes chr2L 20553292 intergenic not near genes chr2L_5_20550001 chr2L_20550001 RAL-325 205 chr2L 20601802 20601816 chr2L 20601880 20601894 5 77 1.5 1.5 1.5 2.0 92 chr2L 20601802 intron CR44909 - chr2L 20601848 intron CR44909 - chr2L 20601894 intron CR44909 - chr2L_5_20600001 chr2L_20600001 RAL-325 206 chr2L 20668692 20668721 chr2L 20668764 20668797 6 74 5.5 5.0 5.2 1.0 105 chr2L 20668692 intron CG31678 - chr2L 20668744 intron CG31678 - chr2L 20668797 intron CG31678 - chr2L_6_20665001 chr2L_20665001 RAL-325 207 chr2L 20821500 20821519 chr2L 20821647 20821667 5 147 9.0 8.0 8.5 0.5 167 chr2L 20821500 intergenic not near genes chr2L 20821584 intergenic not near genes chr2L 20821667 intergenic not near genes chr2L_5_20820001 chr2L_20820001 RAL-325 208 chr2L 20935922 20935953 chr2L 20937029 20937060 6 1109 10.5 18.0 14.2 0.4 1138 chr2L 20935922 intergenic not near genes chr2L 20936491 intergenic not near genes chr2L 20937060 intergenic not near genes chr2L_6_20935001 chr2L_20935001 RAL-325 209 chr2L 20958052 20958069 chr2L 20958352 20958368 5 299 8.0 9.5 8.8 0.5 316 chr2L 20958052 intergenic not near genes chr2L 20958210 intergenic not near genes chr2L 20958368 intergenic not near genes chr2L_5_20955001 chr2L_20955001 RAL-325 210 chr2L 20976659 20976671 chr2L 20981474 20981486 X-element 4 4815 2.0 3.5 2.8 1.1 4827 chr2L 20976659 intron CG42238 - chr2L 20979072 intron CG42238 - chr2L 20981486 intron CG42238 - chr2L_4_20975001 chr2L_20975001 RAL-325 211 chr2L 21020271 21020289 chr2L 21023948 21023961 NOF 4 3676 2.0 2.0 2.0 1.3 3690 chr2L 21020271 intron CG42238 - chr2L 21022116 intron CG42238 - chr2L 21023961 intron CG42238 - chr2L_4_21020001 chr2L_21020001 RAL-325 212 chr2L 21199229 21199258 chr2L 21199306 21199332 12 76 1.0 2.5 1.8 4.3 103 chr2L 21199229 intergenic CG31624 -,Ret - chr2L 21199280 3` UTR CG31624 - chr2L 21199332 3` UTR CG31624 - chr2L_12_21195001 chr2L_21195001 RAL-325 213 chr2L 21218988 21219009 chr2L 21219262 21219282 4 273 1.5 5.5 3.5 0.9 294 chr2L 21218988 intron Atg18b - chr2L 21219135 intron Atg18b - chr2L 21219282 intron Atg18b - chr2L_4_21215001 chr2L_21215001 RAL-325 214 chr2L 21355603 21355627 chr2L 21355747 21355769 4 144 0.0 0.0 0.0 4.0 166 chr2L 21355603 intron Tsp39D + chr2L 21355686 intron Tsp39D + chr2L 21355769 intron Tsp39D + chr2L_4_21355001 chr2L_21355001 RAL-325 215 chr2L 21728652 21728676 chr2L 21729010 21729032 4 358 3.5 1.5 2.5 1.1 380 chr2L 21728652 3` UTR CG31619 + chr2L 21728842 3` UTR CG31619 + chr2L 21729032 3` UTR CG31619 + chr2L_4_21725001 chr2L_21725001 RAL-325 216 chr2L 21769963 21769982 chr2L 21770042 21770063 4 80 5.5 4.5 5.0 0.7 100 chr2L 21769963 intron CG31612 - chr2L 21770013 intron CG31612 - chr2L 21770063 intron CG31612 - chr2L_4_21770001 chr2L_21770001 RAL-325 217 chr2L 21771232 21771261 chr2L 21771339 21771368 5 104 8.0 10.0 9.0 0.5 136 chr2L 21771232 intron CG31612 - chr2L 21771300 intron CG31612 - chr2L 21771368 intron CG31612 - chr2L_5_21770001 chr2L_21770001 RAL-325 218 chr2L 21771984 21772005 chr2L 21772063 21772084 4 78 5.5 4.0 4.8 0.7 100 chr2L 21771984 intron CG31612 - chr2L 21772034 intron CG31612 - chr2L 21772084 intron CG31612 - chr2L_4_21770001 chr2L_21770001 RAL-325 219 chr2L 21859317 21859354 chr2L 21859396 21859397 6 71 11.0 9.5 10.2 0.5 80 chr2L 21859317 intron CR44917 + chr2L 21859357 intron CR44917 + chr2L 21859397 intron CR44917 + chr2L_6_21855001 chr2L_21855001 RAL-325 220 chr2L 22258613 22258644 chr2L 22260737 22260768 G6 7 2124 1.5 6.5 4.0 1.4 2155 chr2L 22258613 intergenic Tif-IA + chr2L 22259690 intergenic not near genes chr2L 22260768 intergenic not near genes chr2L_7_22255001 chr2L_22255001 RAL-325 221 chr2R 1082365 1082384 chr2R 1087127 1087140 Doc 5 4758 1.0 3.0 2.0 1.7 4775 chr2R 1082365 intron rl + chr2R 1084752 intron rl + chr2R 1087140 intron rl + chr2R_5_1080001 chr2R_1080001 RAL-325 222 chr2R 4604567 4604575 chr2R 4604646 4604654 4 79 2.0 2.0 2.0 1.3 87 chr2R 4604567 intron p120ctn + chr2R 4604610 intron p120ctn + chr2R 4604654 intron p120ctn + chr2R_4_4600001 chr2R_4600001 RAL-325 223 chr2R 4704818 4704849 chr2R 4705134 4705164 4 316 0.0 1.5 0.8 2.2 346 chr2R 4704818 intron Nipped-B - chr2R 4704991 intron Nipped-B - chr2R 4705164 intron Nipped-B - chr2R_4_4700001 chr2R_4700001 RAL-325 224 chr2R 4750356 4750372 chr2R 4751513 4751529 1360 4 1155 6.0 7.0 6.5 0.5 1173 chr2R 4750356 intron conu + chr2R 4750942 intron conu + chr2R 4751529 intron conu + chr2R_4_4750001 chr2R_4750001 RAL-325 225 chr2R 4933367 4933386 chr2R 4933925 4933950 4 556 9.0 8.5 8.8 0.4 583 chr2R 4933367 intron Ir41a + chr2R 4933658 intron Ir41a + chr2R 4933950 intron Ir41a + chr2R_4_4930001 chr2R_4930001 RAL-325 226 chr2R 5237353 5237365 chr2R 5237433 5237447 5 81 1.0 0.0 0.5 3.3 94 chr2R 5237353 intron Nipped-A - chr2R 5237400 intron Nipped-A - chr2R 5237447 intron Nipped-A - chr2R_5_5235001 chr2R_5235001 RAL-325 227 chr2R 5342831 5342860 chr2R 5342928 5342957 5 97 4.0 4.0 4.0 1.0 126 chr2R 5342831 intergenic not near genes chr2R 5342894 intergenic not near genes chr2R 5342957 intergenic not near genes chr2R_5_5340001 chr2R_5340001 RAL-325 228 chr2R 5869275 5869304 chr2R 5874351 5874380 flea 5 5075 4.0 2.0 3.0 1.2 5105 chr2R 5869275 intergenic not near genes chr2R 5871828 intergenic not near genes chr2R 5874380 intergenic not near genes chr2R_5_5870001 chr2R_5870001 RAL-325 229 chr2R 6096729 6096751 chr2R 6101910 6101948 BS 8 5188 4.0 5.0 4.5 1.5 5219 chr2R 6096729 intron EcR - chr2R 6099338 intron EcR - chr2R 6101948 intron EcR - chr2R_8_6095001 chr2R_6095001 RAL-325 230 chr2R 6539830 6539853 chr2R 6539945 6539969 5 117 1.0 1.5 1.2 2.3 139 chr2R 6539830 intron jing + chr2R 6539900 intron jing + chr2R 6539969 intron jing + chr2R_5_6535001 chr2R_6535001 RAL-325 231 chr2R 6579774 6579804 chr2R 6584860 6584890 flea 4 5086 2.5 1.5 2.0 1.3 5116 chr2R 6579774 intron jing + chr2R 6582332 intron jing + chr2R 6584890 intron jing + chr2R_4_6580001 chr2R_6580001 RAL-325 232 chr2R 6607928 6607948 chr2R 6608030 6608048 7 101 5.5 8.0 6.8 0.9 120 chr2R 6607928 intron jing + chr2R 6607988 intron jing + chr2R 6608048 intron jing + chr2R_7_6605001 chr2R_6605001 RAL-325 233 chr2R 6622147 6622178 chr2R 6622618 6622649 invader1 4 471 7.0 10.0 8.5 0.4 502 chr2R 6622147 intergenic not near genes chr2R 6622398 intergenic not near genes chr2R 6622649 intergenic not near genes chr2R_4_6620001 chr2R_6620001 RAL-325 234 chr2R 6659632 6659666 chr2R 6660173 6660204 4 542 32.5 23.0 27.8 0.1 572 chr2R 6659632 exon sced + chr2R 6659918 exon sced + chr2R 6660204 3` UTR sced + chr2R_4_6655001 chr2R_6655001 RAL-325 235 chr2R 6831409 6831418 chr2R 6831777 6831785 6 366 7.5 7.0 7.2 0.7 376 chr2R 6831409 intron,exon CG15236 +,CG34215 - chr2R 6831597 intron,exon CG15236 +,CG34215 - chr2R 6831785 intron,5` UTR CG15236 +,CG34215 - chr2R_6_6830001 chr2R_6830001 RAL-325 236 chr2R 6897465 6897486 chr2R 6897551 6897560 5 85 8.0 7.0 7.5 0.6 95 chr2R 6897465 intron CG30158 + chr2R 6897512 intron CG30158 + chr2R 6897560 intron CG30158 + chr2R_5_6895001 chr2R_6895001 RAL-325 237 chr2R 6978643 6978670 chr2R 6978825 6978853 8 182 10.5 5.5 8.0 0.9 210 chr2R 6978643 intron vimar - chr2R 6978748 intron vimar - chr2R 6978853 intron vimar - chr2R_8_6975001 chr2R_6975001 RAL-325 238 chr2R 7025905 7025924 chr2R 7025991 7026009 7 86 10.0 11.0 10.5 0.6 104 chr2R 7025905 intron Tsp42Ef + chr2R 7025957 intron Tsp42Ef + chr2R 7026009 intron Tsp42Ef + chr2R_7_7025001 chr2R_7025001 RAL-325 239 chr2R 7067600 7067624 chr2R 7067684 7067706 8 81 2.5 3.0 2.8 2.1 106 chr2R 7067600 intergenic not near genes chr2R 7067653 intergenic not near genes chr2R 7067706 intergenic not near genes chr2R_8_7065001 chr2R_7065001 RAL-325 240 chr2R 7101619 7101649 chr2R 7101708 7101744 6 89 7.0 4.5 5.8 0.9 125 chr2R 7101619 intron esn + chr2R 7101682 intron esn + chr2R 7101744 intron esn + chr2R_6_7100001 chr2R_7100001 RAL-325 241 chr2R 7175524 7175531 chr2R 7175574 7175605 4 63 9.0 7.5 8.2 0.4 81 chr2R 7175524 intron pk + chr2R 7175564 intron pk + chr2R 7175605 intron pk + chr2R_4_7175001 chr2R_7175001 RAL-325 242 chr2R 7196570 7196585 chr2R 7201345 7201360 F-element 5 4775 2.5 2.5 2.5 1.4 4790 chr2R 7196570 intron pk + chr2R 7198965 intron pk + chr2R 7201360 intron pk + chr2R_5_7195001 chr2R_7195001 RAL-325 243 chr2R 7209870 7209874 chr2R 7217631 7217635 roo 4 7760 1.5 1.5 1.5 1.6 7765 chr2R 7209870 intron pk + chr2R 7213752 intron pk + chr2R 7217635 intron pk + chr2R_4_7210001 chr2R_7210001 RAL-325 244 chr2R 7226652 7226675 chr2R 7226733 7226770 4 92 5.5 8.0 6.8 0.5 118 chr2R 7226652 intergenic not near genes chr2R 7226711 intergenic not near genes chr2R 7226770 intergenic not near genes chr2R_4_7225001 chr2R_7225001 RAL-325 245 chr2R 7417915 7418162 chr2R 7418001 7418241 8 80 4.0 8.0 6.0 1.1 326 chr2R 7417915 intergenic not near genes chr2R 7418078 intergenic not near genes chr2R 7418241 intergenic not near genes chr2R_8_7415001 chr2R_7415001 RAL-325 246 chr2R 7434888 7434918 chr2R 7439189 7439219 Juan 6 4300 2.5 2.5 2.5 1.7 4331 chr2R 7434888 intergenic so + chr2R 7437054 intergenic not near genes chr2R 7439219 intergenic not near genes chr2R_6_7435001 chr2R_7435001 RAL-325 247 chr2R 7815676 7815684 chr2R 7822142 7822151 Burdock 4 6467 6.0 1.0 3.5 0.9 6475 chr2R 7815676 intergenic CG1882 + chr2R 7818914 intergenic not near genes chr2R 7822151 3` UTR cathD - chr2R_4_7815001 chr2R_7815001 RAL-325 248 chr2R 7815687 7815697 chr2R 7822141 7822166 Burdock 4 6462 3.5 1.0 2.2 1.2 6479 chr2R 7815687 intergenic CG1882 + chr2R 7818926 intergenic not near genes chr2R 7822166 3` UTR cathD - chr2R_4_7815001 chr2R_7815001 RAL-325 249 chr2R 7954090 7954102 chr2R 7959634 7959661 5 5551 19.5 23.0 21.2 0.2 5571 chr2R 7954090 5` UTR CG14764 - chr2R 7956876 intron CG2906 + chr2R 7959661 exon CG2915 - chr2R_5_7955001 chr2R_7955001 RAL-325 250 chr2R 7983318 7983342 chr2R 7983392 7983418 5 75 9.0 13.5 11.2 0.4 100 chr2R 7983318 intron ACC - chr2R 7983368 intron ACC - chr2R 7983418 intron ACC - chr2R_5_7980001 chr2R_7980001 RAL-325 251 chr2R 8015664 8015677 chr2R 8017687 8017699 4 2022 1.5 5.0 3.2 1.0 2035 chr2R 8015664 intergenic mir-4981 + chr2R 8016682 intergenic not near genes chr2R 8017699 intergenic not near genes chr2R_4_8015001 chr2R_8015001 RAL-325 252 chr2R 8076696 8076706 chr2R 8076775 8076783 5 79 11.0 11.5 11.2 0.4 87 chr2R 8076696 intron lig + chr2R 8076740 intron lig + chr2R 8076783 intron lig + chr2R_5_8075001 chr2R_8075001 RAL-325 253 chr2R 8089256 8089285 chr2R 8089341 8089371 9 84 2.5 4.0 3.2 2.1 115 chr2R 8089256 3` UTR sut2 + chr2R 8089314 intergenic sut2 +,sut3 + chr2R 8089371 intergenic sut2 +,sut3 + chr2R_9_8085001 chr2R_8085001 RAL-325 254 chr2R 8105945 8105966 chr2R 8106034 8106057 5 90 11.0 8.0 9.5 0.5 112 chr2R 8105945 intron Cul4 - chr2R 8106001 intron Cul4 - chr2R 8106057 5` UTR Cul4 - chr2R_5_8105001 chr2R_8105001 RAL-325 255 chr2R 8330860 8330878 chr2R 8331346 8331363 roo 5 486 5.0 2.0 3.5 1.1 503 chr2R 8330860 intron pdm3 + chr2R 8331112 intron pdm3 + chr2R 8331363 intron pdm3 + chr2R_5_8330001 chr2R_8330001 RAL-325 256 chr2R 8398206 8398241 chr2R 8402986 8402999 Doc 5 4772 3.5 0.5 2.0 1.7 4793 chr2R 8398206 intron CG2121 - chr2R 8400602 intron CG2121 - chr2R 8402999 intron CG2121 - chr2R_5_8400001 chr2R_8400001 RAL-325 257 chr2R 8648258 8648282 chr2R 8648462 8648487 7 203 10.5 3.0 6.8 0.9 229 chr2R 8648258 intergenic not near genes chr2R 8648372 intergenic not near genes chr2R 8648487 intergenic not near genes chr2R_7_8645001 chr2R_8645001 RAL-325 258 chr2R 8697477 8697499 chr2R 8697554 8697578 9 79 7.5 5.5 6.5 1.2 101 chr2R 8697477 intron CG8738 + chr2R 8697528 intron CG8738 + chr2R 8697578 intron CG8738 + chr2R_9_8695001 chr2R_8695001 RAL-325 259 chr2R 8722764 8722794 chr2R 8723005 8723033 pogo 8 238 2.5 2.0 2.2 2.5 269 chr2R 8722764 intron CG14767 - chr2R 8722898 intron CG14767 - chr2R 8723033 intron CG14767 - chr2R_8_8720001 chr2R_8720001 RAL-325 260 chr2R 8766777 8766785 chr2R 8766973 8766996 4 207 4.5 3.5 4.0 0.8 219 chr2R 8766777 intergenic not near genes chr2R 8766886 intergenic not near genes chr2R 8766996 intergenic not near genes chr2R_4_8765001 chr2R_8765001 RAL-325 261 chr2R 8761767 8761784 chr2R 8767518 8767555 6 5763 25.0 20.5 22.8 0.3 5788 chr2R 8761767 intergenic not near genes chr2R 8764661 intergenic not near genes chr2R 8767555 intergenic not near genes chr2R_6_8760001 chr2R_8760001 RAL-325 262 chr2R 8847196 8847200 chr2R 8847290 8847301 4 95 8.0 15.0 11.5 0.3 105 chr2R 8847196 intron sns + chr2R 8847248 intron sns + chr2R 8847301 intron sns + chr2R_4_8845001 chr2R_8845001 RAL-325 263 chr2R 8960466 8960476 chr2R 8960618 8960622 4 150 6.5 8.5 7.5 0.5 156 chr2R 8960466 3` UTR babo + chr2R 8960544 3` UTR babo + chr2R 8960622 3` UTR babo + chr2R_4_8960001 chr2R_8960001 RAL-325 264 chr2R 8976618 8976637 chr2R 8976690 8976714 5 73 5.0 6.5 5.8 0.7 96 chr2R 8976618 intron CG8213 - chr2R 8976666 intron CG8213 - chr2R 8976714 intron CG8213 - chr2R_5_8975001 chr2R_8975001 RAL-325 265 chr2R 8995941 8995956 chr2R 8996027 8996042 5 86 9.0 11.5 10.2 0.4 101 chr2R 8995941 exon Np - chr2R 8995992 intron Np - chr2R 8996042 intron Np - chr2R_5_8995001 chr2R_8995001 RAL-325 266 chr2R 9151303 9151335 chr2R 9157772 9157805 Burdock 9 6469 3.0 1.0 2.0 3.0 6502 chr2R 9151303 exon CG30345 + chr2R 9154554 intergenic not near genes chr2R 9157805 intergenic CG8008 - chr2R_9_9150001 chr2R_9150001 RAL-325 267 chr2R 9161983 9162005 chr2R 9162067 9162089 4 83 7.0 3.5 5.2 0.6 106 chr2R 9161983 5` UTR CR44283 + chr2R 9162036 3` UTR CG8046 - chr2R 9162089 3` UTR CG8046 - chr2R_4_9160001 chr2R_9160001 RAL-325 268 chr2R 9227870 9227898 chr2R 9227955 9227984 4 84 4.5 5.5 5.0 0.7 114 chr2R 9227870 3` UTR hig - chr2R 9227927 3` UTR hig - chr2R 9227984 3` UTR hig - chr2R_4_9225001 chr2R_9225001 RAL-325 269 chr2R 9368130 9368155 chr2R 9368205 9368223 6 69 2.5 1.5 2.0 2.0 93 chr2R 9368130 intron CG13954 - chr2R 9368176 intron CG13954 - chr2R 9368223 intron CG13954 - chr2R_6_9365001 chr2R_9365001 RAL-325 270 chr2R 9378121 9378143 chr2R 9378196 9378221 9 78 1.0 3.5 2.2 2.8 100 chr2R 9378121 intron CG13954 - chr2R 9378171 intron CG13954 - chr2R 9378221 intron CG13954 - chr2R_9_9375001 chr2R_9375001 RAL-325 271 chr2R 9510672 9510698 chr2R 9510788 9510814 12 114 1.5 2.0 1.8 4.3 142 chr2R 9510672 intron brp + chr2R 9510743 intron brp + chr2R 9510814 intron brp + chr2R_12_9510001 chr2R_9510001 RAL-325 272 chr2R 9726621 9726644 chr2R 9734170 9734194 17.6 4 7550 2.0 2.5 2.2 1.2 7573 chr2R 9726621 intron sqa - chr2R 9730408 intron sqa - chr2R 9734194 intron sqa - chr2R_4_9730001 chr2R_9730001 RAL-325 273 chr2R 9746559 9746575 chr2R 9747893 9747908 5 1334 10.5 7.5 9.0 0.5 1349 chr2R 9746559 5` UTR sqa - chr2R 9747234 5` UTR sqa - chr2R 9747908 5` UTR sqa - chr2R_5_9745001 chr2R_9745001 RAL-325 274 chr2R 9859199 9859230 chr2R 9861549 9861580 5 2352 9.5 7.0 8.2 0.5 2381 chr2R 9859199 intron CG1516 - chr2R 9860390 intron CG1516 - chr2R 9861580 intergenic CR44293 +,CG1516 - chr2R_5_9860001 chr2R_9860001 RAL-325 275 chr2R 9871038 9871065 chr2R 9871524 9871534 roo 4 477 1.5 1.5 1.5 1.6 496 chr2R 9871038 intron cbx - chr2R 9871286 intron cbx - chr2R 9871534 intron,5` UTR cbx -,CG18446 + chr2R_4_9870001 chr2R_9870001 RAL-325 276 chr2R 9935029 9935059 chr2R 9935110 9935140 4 81 7.5 4.5 6.0 0.6 111 chr2R 9935029 intron Mef2 - chr2R 9935084 intron Mef2 - chr2R 9935140 intron Mef2 - chr2R_4_9935001 chr2R_9935001 RAL-325 277 chr2R 10005849 10005884 chr2R 10007014 10007042 1360 9 1162 4.5 2.5 3.5 2.0 1193 chr2R 10005849 intron Pka-R2 - chr2R 10006446 intron Pka-R2 - chr2R 10007042 intron Pka-R2 - chr2R_9_10005001 chr2R_10005001 RAL-325 278 chr2R 10167120 10167134 chr2R 10167193 10167207 5 74 9.0 8.5 8.8 0.5 87 chr2R 10167120 intron KCNQ - chr2R 10167164 intron KCNQ - chr2R 10167207 intron KCNQ - chr2R_5_10165001 chr2R_10165001 RAL-325 279 chr2R 10216194 10216221 chr2R 10216270 10216298 5 77 2.0 2.5 2.2 1.6 104 chr2R 10216194 intron,intron CG12912 -,Hr46 - chr2R 10216246 intron,intron CG12912 -,Hr46 - chr2R 10216298 intron,intron CG12912 -,Hr46 - chr2R_5_10215001 chr2R_10215001 RAL-325 280 chr2R 10225734 10225748 chr2R 10225816 10225830 5 82 5.5 5.5 5.5 0.8 96 chr2R 10225734 intron,intron CG12912 -,Hr46 - chr2R 10225782 intron,intron CG12912 -,Hr46 - chr2R 10225830 intron,intron CG12912 -,Hr46 - chr2R_5_10225001 chr2R_10225001 RAL-325 281 chr2R 10469030 10469055 chr2R 10469153 10469181 12 125 1.5 3.5 2.5 3.4 151 chr2R 10469030 intron CG11777 + chr2R 10469106 intron CG11777 + chr2R 10469181 intron CG11777 + chr2R_12_10465001 chr2R_10465001 RAL-325 282 chr2R 10585579 10585590 chr2R 10594161 10594173 Tirant 4 8580 1.5 1.5 1.5 1.6 8594 chr2R 10585579 intron psq + chr2R 10589876 intron psq + chr2R 10594173 intron psq + chr2R_4_10585001 chr2R_10585001 RAL-325 283 chr2R 10622351 10622363 chr2R 10637116 10637117 mdg1 4 14762 3.0 1.5 2.2 1.2 14766 chr2R 10622351 intron CG11883 + chr2R 10629734 intron CG11883 + chr2R 10637117 intron CG11883 + chr2R_4_10625001 chr2R_10625001 RAL-325 284 chr2R 10851193 10851212 chr2R 10851278 10851297 6 85 4.5 2.0 3.2 1.4 104 chr2R 10851193 intron CG30015 - chr2R 10851245 intron CG30015 - chr2R 10851297 intron CG30015 - chr2R_6_10850001 chr2R_10850001 RAL-325 285 chr2R 10860493 10860504 chr2R 10860572 10860586 4 81 2.0 3.0 2.5 1.1 93 chr2R 10860493 intron CG30015 - chr2R 10860540 intron CG30015 - chr2R 10860586 intron CG30015 - chr2R_4_10860001 chr2R_10860001 RAL-325 286 chr2R 10937805 10937830 chr2R 10937942 10937967 6 135 2.5 5.5 4.0 1.2 162 chr2R 10937805 intergenic not near genes chr2R 10937886 intergenic not near genes chr2R 10937967 intergenic Spn47C - chr2R_6_10935001 chr2R_10935001 RAL-325 287 chr2R 10989481 10989486 chr2R 10989544 10989565 4 70 3.0 10.5 6.8 0.5 84 chr2R 10989481 intron luna - chr2R 10989523 intron luna - chr2R 10989565 intron luna - chr2R_4_10985001 chr2R_10985001 RAL-325 288 chr2R 11009829 11009847 chr2R 11018994 11019020 roo 5 9168 2.0 3.0 2.5 1.4 9191 chr2R 11009829 intron luna - chr2R 11014424 intron luna - chr2R 11019020 intron luna - chr2R_5_11010001 chr2R_11010001 RAL-325 289 chr2R 11019892 11019907 chr2R 11024957 11024968 jockey 7 5064 1.0 3.0 2.0 2.3 5076 chr2R 11019892 intron luna - chr2R 11022430 intron luna - chr2R 11024968 intron luna - chr2R_7_11020001 chr2R_11020001 RAL-325 290 chr2R 11076400 11076419 chr2R 11076476 11076495 5 75 11.5 11.0 11.2 0.4 95 chr2R 11076400 intron luna - chr2R 11076448 intron luna - chr2R 11076495 intron luna - chr2R_5_11075001 chr2R_11075001 RAL-325 291 chr2R 11102876 11102889 chr2R 11102957 11102970 4 81 2.0 0.0 1.0 2.0 94 chr2R 11102876 intron luna - chr2R 11102923 intron luna - chr2R 11102970 intron luna - chr2R_4_11100001 chr2R_11100001 RAL-325 292 chr2R 11207816 11207846 chr2R 11208008 11208033 BS 8 188 4.0 2.0 3.0 2.0 217 chr2R 11207816 intron shn + chr2R 11207924 intron shn + chr2R 11208033 intron shn + chr2R_8_11205001 chr2R_11205001 RAL-325 293 chr2R 11292978 11292997 chr2R 11293048 11293076 7 75 5.0 1.5 3.2 1.7 98 chr2R 11292978 exon,3` UTR dare -,CG30033 + chr2R 11293027 5` UTR,3` UTR dare -,CG30033 + chr2R 11293076 5` UTR,3` UTR dare -,CG30033 + chr2R_7_11290001 chr2R_11290001 RAL-325 294 chr2R 11318001 11318025 chr2R 11318099 11318122 6 96 9.5 7.0 8.2 0.7 121 chr2R 11318001 intron nompA - chr2R 11318062 intron nompA - chr2R 11318122 intron nompA - chr2R_6_11315001 chr2R_11315001 RAL-325 295 chr2R 11468977 11468989 chr2R 11469053 11469061 5 75 9.0 6.5 7.8 0.6 84 chr2R 11468977 intergenic not near genes chr2R 11469019 intergenic not near genes chr2R 11469061 intergenic not near genes chr2R_5_11465001 chr2R_11465001 RAL-325 296 chr2R 11472653 11472659 chr2R 11473850 11473855 pogo 4 1196 5.0 2.0 3.5 0.9 1202 chr2R 11472653 intergenic not near genes chr2R 11473254 intergenic not near genes chr2R 11473855 intergenic not near genes chr2R_4_11470001 chr2R_11470001 RAL-325 297 chr2R 11472665 11472679 chr2R 11473847 11473875 pogo 6 1188 3.5 2.0 2.8 1.6 1210 chr2R 11472665 intergenic not near genes chr2R 11473270 intergenic not near genes chr2R 11473875 intergenic not near genes chr2R_6_11470001 chr2R_11470001 RAL-325 298 chr2R 11677879 11677885 chr2R 11677950 11677962 5 76 1.0 0.5 0.8 2.8 83 chr2R 11677879 intron,exon Roc2 -,Tret1-2 + chr2R 11677920 intron,3` UTR Roc2 -,Tret1-2 + chr2R 11677962 intron,3` UTR Roc2 -,Tret1-2 + chr2R_5_11675001 chr2R_11675001 RAL-325 299 chr2R 12187474 12187496 chr2R 12190096 12190112 6 2620 66.0 33.5 49.8 0.1 2638 chr2R 12187474 exon Cyp6g1 + chr2R 12188793 exon Cyp6g2 - chr2R 12190112 exon Cyp6g2 - chr2R_6_12185001 chr2R_12185001 RAL-325 300 chr2R 12187472 12187479 chr2R 12190118 12190124 8 2629 54.5 31.0 42.8 0.2 2652 chr2R 12187472 exon Cyp6g1 + chr2R 12188798 exon Cyp6g2 - chr2R 12190124 exon Cyp6g2 - chr2R_8_12185001 chr2R_12185001 RAL-325 301 chr2R 12240760 12240781 chr2R 12240836 12240857 11 76 4.0 0.0 2.0 3.7 97 chr2R 12240760 exon CG13170 + chr2R 12240808 3` UTR CG13170 + chr2R 12240857 intergenic CG13170 +,CG43315 + chr2R_11_12240001 chr2R_12240001 RAL-325 302 chr2R 12363379 12363411 chr2R 12363811 12363843 5 431 4.5 4.0 4.2 1.0 464 chr2R 12363379 intergenic CG30043 + chr2R 12363611 intergenic CG30043 + chr2R 12363843 intergenic not near genes chr2R_5_12360001 chr2R_12360001 RAL-325 303 chr2R 12501707 12501729 chr2R 12503856 12503863 Rt1c 5 2151 1.5 3.5 2.5 1.4 2156 chr2R 12501707 intron fdl - chr2R 12502785 intron fdl - chr2R 12503863 intron fdl - chr2R_5_12500001 chr2R_12500001 RAL-325 304 chr2R 12565583 12565597 chr2R 12565965 12565977 6 380 0.0 3.0 1.5 2.4 394 chr2R 12565583 intergenic not near genes chr2R 12565780 intergenic Cyp301a1 + chr2R 12565977 intergenic Cyp301a1 + chr2R_6_12565001 chr2R_12565001 RAL-325 305 chr2R 12739132 12739152 chr2R 12739208 12739214 4 70 5.5 9.5 7.5 0.5 82 chr2R 12739132 intron CG42663 + chr2R 12739173 intron CG42663 + chr2R 12739214 intron CG42663 + chr2R_4_12735001 chr2R_12735001 RAL-325 306 chr2R 12789308 12789319 chr2R 12797657 12797667 roo 6 8352 4.0 3.0 3.5 1.3 8359 chr2R 12789308 intron,3` UTR sca +,CR45137 - chr2R 12793488 intron,intron sca +,CR45137 - chr2R 12797667 intron,3` UTR sca +,CR45137 - chr2R_6_12790001 chr2R_12790001 RAL-325 307 chr2R 12808011 12808020 chr2R 12808088 12808098 4 77 6.5 4.0 5.2 0.6 87 chr2R 12808011 intergenic CG17580 + chr2R 12808054 intergenic CG17580 + chr2R 12808098 intergenic CG17580 + chr2R_4_12805001 chr2R_12805001 RAL-325 308 chr2R 12897469 12897486 chr2R 12897560 12897574 5 90 1.5 3.5 2.5 1.4 105 chr2R 12897469 intron vg + chr2R 12897522 intron vg + chr2R 12897574 intron vg + chr2R_5_12895001 chr2R_12895001 RAL-325 309 chr2R 13136841 13136863 chr2R 13141637 13141660 Doc 14 4794 7.0 3.5 5.2 2.3 4819 chr2R 13136841 exon Cap-G + chr2R 13139250 intron Cap-G + chr2R 13141660 intron Cap-G + chr2R_14_13135001 chr2R_13135001 RAL-325 310 chr2R 13220546 13220555 chr2R 13220624 13220634 4 79 1.5 5.5 3.5 0.9 88 chr2R 13220546 intron CG17059 + chr2R 13220590 intron CG17059 + chr2R 13220634 intron CG17059 + chr2R_4_13220001 chr2R_13220001 RAL-325 311 chr2R 13258556 13258587 chr2R 13259801 13259833 6 1245 3.0 0.5 1.8 2.1 1277 chr2R 13258556 intergenic CG10799 + chr2R 13259194 intergenic not near genes chr2R 13259833 intergenic CG42319 + chr2R_6_13255001 chr2R_13255001 RAL-325 312 chr2R 13309666 13309683 chr2R 13309783 13309789 6 115 4.5 3.5 4.0 1.2 123 chr2R 13309666 intergenic not near genes chr2R 13309728 intergenic not near genes chr2R 13309789 intergenic not near genes chr2R_6_13305001 chr2R_13305001 RAL-325 313 chr2R 13439118 13439139 chr2R 13439230 13439276 4 131 3.5 4.0 3.8 0.8 158 chr2R 13439118 intergenic CG42321 -,cnn - chr2R 13439197 intergenic cnn -,CG42321 - chr2R 13439276 intergenic cnn -,CG42321 - chr2R_4_13435001 chr2R_13435001 RAL-325 314 chr2R 13438863 13438884 chr2R 13440193 13440202 4 1322 9.5 17.5 13.5 0.3 1339 chr2R 13438863 5` UTR CG42321 - chr2R 13439532 3` UTR cnn - chr2R 13440202 exon cnn - chr2R_4_13435001 chr2R_13435001 RAL-325 315 chr2R 13580500 13580531 chr2R 13580849 13580881 jockey 8 348 2.5 3.0 2.8 2.1 381 chr2R 13580500 3` UTR CG6191 - chr2R 13580690 3` UTR,3` UTR CG6191 -,CG45088 - chr2R 13580881 3` UTR,3` UTR CG6191 -,CG45088 - chr2R_8_13580001 chr2R_13580001 RAL-325 316 chr2R 13704266 13704274 chr2R 13704356 13704364 5 90 7.5 14.5 11.0 0.4 98 chr2R 13704266 intron fas + chr2R 13704315 intron fas + chr2R 13704364 intron fas + chr2R_5_13700001 chr2R_13700001 RAL-325 317 chr2R 13721207 13721227 chr2R 13721289 13721308 7 77 5.0 4.0 4.5 1.3 101 chr2R 13721207 intron fas + chr2R 13721258 intron fas + chr2R 13721308 intron fas + chr2R_7_13720001 chr2R_13720001 RAL-325 318 chr2R 13728143 13728161 chr2R 13735798 13735818 opus 4 7656 1.0 0.0 0.5 2.7 7675 chr2R 13728143 intron fas + chr2R 13731980 intron fas + chr2R 13735818 intron fas + chr2R_4_13730001 chr2R_13730001 RAL-325 319 chr2R 13768992 13769010 chr2R 13769091 13769103 4 97 0.5 5.0 2.8 1.1 111 chr2R 13768992 intergenic not near genes chr2R 13769048 intergenic not near genes chr2R 13769103 intergenic not near genes chr2R_4_13765001 chr2R_13765001 RAL-325 320 chr2R 13791530 13791560 chr2R 13791644 13791650 6 105 5.0 4.0 4.5 1.1 120 chr2R 13791530 intergenic CR43811 + chr2R 13791590 intergenic CR43811 + chr2R 13791650 intergenic CR43811 + chr2R_6_13790001 chr2R_13790001 RAL-325 321 chr2R 13905600 13905636 chr2R 13907582 13907602 Rt1a 7 1976 1.0 4.5 2.8 1.8 2002 chr2R 13905600 intron shot - chr2R 13906601 intron shot - chr2R 13907602 intron shot - chr2R_7_13905001 chr2R_13905001 RAL-325 322 chr2R 13963521 13963543 chr2R 13963605 13963624 4 85 6.5 7.5 7.0 0.5 103 chr2R 13963521 intron Cp1 + chr2R 13963572 intron Cp1 + chr2R 13963624 intron Cp1 + chr2R_4_13960001 chr2R_13960001 RAL-325 323 chr2R 14277579 14277608 chr2R 14277658 14277689 7 80 8.0 8.5 8.2 0.8 110 chr2R 14277579 5` UTR Ih + chr2R 14277634 5` UTR Ih + chr2R 14277689 5` UTR Ih + chr2R_7_14275001 chr2R_14275001 RAL-325 324 chr2R 14357565 14357755 chr2R 14357651 14357895 8 113 3.5 4.5 4.0 1.6 330 chr2R 14357565 intergenic CG8617 -,Arc1 - chr2R 14357730 intergenic Arc1 -,CG8617 - chr2R 14357895 intergenic Arc1 - chr2R_8_14355001 chr2R_14355001 RAL-325 325 chr2R 14394230 14394260 chr2R 14399019 14399037 Doc 5 4785 0.5 2.0 1.2 2.3 4807 chr2R 14394230 intergenic not near genes chr2R 14396634 intergenic not near genes chr2R 14399037 intergenic not near genes chr2R_5_14395001 chr2R_14395001 RAL-325 326 chr2R 14542758 14542792 chr2R 14542855 14542888 5 94 3.0 1.0 2.0 1.7 130 chr2R 14542758 intron ttv + chr2R 14542823 intron ttv + chr2R 14542888 intron ttv + chr2R_5_14540001 chr2R_14540001 RAL-325 327 chr2R 14566452 14566479 chr2R 14566538 14566565 9 86 1.5 4.5 3.0 2.2 113 chr2R 14566452 intron ttv + chr2R 14566508 intron ttv + chr2R 14566565 intron ttv + chr2R_9_14565001 chr2R_14565001 RAL-325 328 chr2R 14799865 14799889 chr2R 14799941 14799965 5 75 2.0 2.5 2.2 1.6 100 chr2R 14799865 intron kn - chr2R 14799915 intron kn - chr2R 14799965 intron kn - chr2R_5_14795001 chr2R_14795001 RAL-325 329 chr2R 14820910 14820934 chr2R 14820984 14821020 12 75 1.5 2.0 1.8 4.3 110 chr2R 14820910 intergenic not near genes chr2R 14820965 intergenic not near genes chr2R 14821020 intergenic not near genes chr2R_12_14820001 chr2R_14820001 RAL-325 330 chr2R 14855038 14855060 chr2R 14855130 14855151 6 91 4.0 4.0 4.0 1.2 113 chr2R 14855038 5` UTR Ciao1 - chr2R 14855094 intergenic Ciao1 -,HPS1 + chr2R 14855151 intergenic Ciao1 -,HPS1 + chr2R_6_14855001 chr2R_14855001 RAL-325 331 chr2R 14873689 14873706 chr2R 14875207 14875223 4 1518 7.5 6.5 7.0 0.5 1534 chr2R 14873689 intergenic Cyp6a22 +,Cyp6a17 + chr2R 14874456 exon Cyp6a17 + chr2R 14875223 exon Cyp6a17 + chr2R_4_14870001 chr2R_14870001 RAL-325 332 chr2R 14875253 14875264 chr2R 14875657 14875671 4 408 4.0 6.0 5.0 0.7 418 chr2R 14875253 exon Cyp6a17 + chr2R 14875462 exon Cyp6a17 + chr2R 14875671 3` UTR Cyp6a17 + chr2R_4_14875001 chr2R_14875001 RAL-325 333 chr2R 14889207 14889225 chr2R 14897815 14897833 Max-element 5 8607 2.5 0.0 1.2 2.3 8626 chr2R 14889207 intergenic Cyp6a8 - chr2R 14893520 intergenic not near genes chr2R 14897833 intergenic not near genes chr2R_5_14890001 chr2R_14890001 RAL-325 334 chr2R 14911701 14911724 chr2R 14911824 14911847 8 123 3.0 1.5 2.2 2.5 146 chr2R 14911701 intron CG10249 - chr2R 14911774 intron CG10249 - chr2R 14911847 intron CG10249 - chr2R_8_14910001 chr2R_14910001 RAL-325 335 chr2R 15061871 15061892 chr2R 15061949 15061970 4 77 4.0 4.0 4.0 0.8 99 chr2R 15061871 intergenic not near genes chr2R 15061920 intergenic not near genes chr2R 15061970 intergenic not near genes chr2R_4_15060001 chr2R_15060001 RAL-325 336 chr2R 15084983 15085007 chr2R 15092029 15092056 297 5 7048 2.0 1.5 1.8 1.8 7073 chr2R 15084983 intergenic not near genes chr2R 15088520 intergenic not near genes chr2R 15092056 5` UTR CR44457 + chr2R_5_15085001 chr2R_15085001 RAL-325 337 chr2R 15094894 15094911 chr2R 15094971 15094987 4 77 1.0 2.0 1.5 1.6 93 chr2R 15094894 intergenic not near genes chr2R 15094940 intergenic not near genes chr2R 15094987 intergenic not near genes chr2R_4_15090001 chr2R_15090001 RAL-325 338 chr2R 15133428 15133498 chr2R 15133518 15133576 8 97 4.0 4.5 4.2 1.5 148 chr2R 15133428 intron chn + chr2R 15133502 intron chn + chr2R 15133576 intron chn + chr2R_8_15130001 chr2R_15130001 RAL-325 339 chr2R 15301878 15301898 chr2R 15301956 15301968 4 75 3.0 3.0 3.0 1.0 90 chr2R 15301878 intron Trpm - chr2R 15301923 intron Trpm - chr2R 15301968 intron Trpm - chr2R_4_15300001 chr2R_15300001 RAL-325 340 chr2R 15351448 15351477 chr2R 15351566 15351595 7 117 6.0 4.5 5.2 1.1 147 chr2R 15351448 intron unc-5 + chr2R 15351522 intron unc-5 + chr2R 15351595 intron unc-5 + chr2R_7_15350001 chr2R_15350001 RAL-325 341 chr2R 15537714 15537741 chr2R 15537796 15537823 5 82 4.0 4.5 4.2 1.0 109 chr2R 15537714 3` UTR CG30471 + chr2R 15537768 3` UTR CG30471 + chr2R 15537823 intergenic CG30471 +,CG30467 + chr2R_5_15535001 chr2R_15535001 RAL-325 342 chr2R 15585689 15585717 chr2R 15586260 15586288 4 571 4.0 6.5 5.2 0.6 599 chr2R 15585689 intergenic not near genes chr2R 15585988 intergenic not near genes chr2R 15586288 intergenic not near genes chr2R_4_15585001 chr2R_15585001 RAL-325 343 chr2R 15720787 15720794 chr2R 15720882 15720886 4 94 3.0 8.0 5.5 0.6 99 chr2R 15720787 intergenic not near genes chr2R 15720836 intergenic not near genes chr2R 15720886 intergenic not near genes chr2R_4_15720001 chr2R_15720001 RAL-325 344 chr2R 15810379 15810404 chr2R 15810458 15810482 5 78 4.0 6.0 5.0 0.8 103 chr2R 15810379 intron,intron Zasp52 -,tun + chr2R 15810430 intron,intron Zasp52 -,tun + chr2R 15810482 intron,intron Zasp52 -,tun + chr2R_5_15810001 chr2R_15810001 RAL-325 345 chr2R 15911239 15911274 chr2R 15911469 15911504 5 228 6.5 5.0 5.8 0.7 265 chr2R 15911239 intron sli - chr2R 15911372 intron sli - chr2R 15911504 intron sli - chr2R_5_15910001 chr2R_15910001 RAL-325 346 chr2R 15999026 15999053 chr2R 15999106 15999126 5 79 2.5 4.5 3.5 1.1 100 chr2R 15999026 intron ATPCL - chr2R 15999076 intron ATPCL - chr2R 15999126 intron ATPCL - chr2R_5_15995001 chr2R_15995001 RAL-325 347 chr2R 16013552 16013572 chr2R 16013626 16013636 5 72 15.5 16.5 16.0 0.3 84 chr2R 16013552 3` UTR CG8389 + chr2R 16013594 3` UTR CG8389 + chr2R 16013636 3` UTR CG8389 + chr2R_5_16010001 chr2R_16010001 RAL-325 348 chr2R 16119953 16119966 chr2R 16120027 16120037 5 74 10.5 8.0 9.2 0.5 84 chr2R 16119953 intron Jhe + chr2R 16119995 intron Jhe + chr2R 16120037 intron Jhe + chr2R_5_16115001 chr2R_16115001 RAL-325 349 chr2R 16596945 16596969 chr2R 16597026 16597047 5 81 5.5 6.5 6.0 0.7 102 chr2R 16596945 intron CG8303 - chr2R 16596996 intron CG8303 - chr2R 16597047 intron CG8303 - chr2R_5_16595001 chr2R_16595001 RAL-325 350 chr2R 17074899 17074918 chr2R 17074994 17075013 5 95 0.5 1.0 0.8 2.8 114 chr2R 17074899 intron CG30460 - chr2R 17074956 intron CG30460 - chr2R 17075013 intron CG30460 - chr2R_5_17070001 chr2R_17070001 RAL-325 351 chr2R 17225295 17225304 chr2R 17225373 17225382 4 78 10.5 11.0 10.8 0.3 87 chr2R 17225295 intron mbl + chr2R 17225338 intron mbl + chr2R 17225382 intron mbl + chr2R_4_17225001 chr2R_17225001 RAL-325 352 chr2R 17232805 17232818 chr2R 17232889 17232889 4 82 8.0 8.5 8.2 0.4 84 chr2R 17232805 intron mbl + chr2R 17232847 intron mbl + chr2R 17232889 intron mbl + chr2R_4_17230001 chr2R_17230001 RAL-325 353 chr2R 17556439 17556463 chr2R 17556524 17556546 7 84 6.5 7.0 6.8 0.9 107 chr2R 17556439 intergenic MESR4 + chr2R 17556492 intergenic MESR4 + chr2R 17556546 intergenic MESR4 +,Klp54D + chr2R_7_17555001 chr2R_17555001 RAL-325 354 chr2R 17722174 17722198 chr2R 17722258 17722279 4 83 4.5 4.0 4.2 0.8 105 chr2R 17722174 intergenic CG10934 + chr2R 17722226 intergenic CG10934 + chr2R 17722279 intergenic CG10934 + chr2R_4_17720001 chr2R_17720001 RAL-325 355 chr2R 17782366 17782388 chr2R 17783569 17783591 pogo 6 1202 0.5 1.0 0.8 3.3 1225 chr2R 17782366 intergenic CG33981 -,fab1 - chr2R 17782978 intergenic not near genes chr2R 17783591 intergenic mir-31a - chr2R_6_17780001 chr2R_17780001 RAL-325 356 chr2R 17784033 17784057 chr2R 17784274 17784297 pogo 5 236 0.5 5.0 2.8 1.3 264 chr2R 17784033 intergenic mir-31a - chr2R 17784165 intergenic mir-31a - chr2R 17784297 intergenic mir-31a - chr2R_5_17780001 chr2R_17780001 RAL-325 357 chr2R 17997157 17997194 chr2R 17997239 17997276 6 82 3.5 3.5 3.5 1.3 119 chr2R 17997157 intron dpr13 - chr2R 17997216 intron dpr13 - chr2R 17997276 intron dpr13 - chr2R_6_17995001 chr2R_17995001 RAL-325 358 chr2R 18312372 18312396 chr2R 18312472 18312493 7 97 3.0 5.5 4.2 1.3 121 chr2R 18312372 intron sbb - chr2R 18312432 intron sbb - chr2R 18312493 intron sbb - chr2R_7_18310001 chr2R_18310001 RAL-325 359 chr2R 18414042 18414053 chr2R 18414124 18414124 4 80 11.0 8.0 9.5 0.4 82 chr2R 18414042 intron Dp1 + chr2R 18414083 intron Dp1 + chr2R 18414124 intron Dp1 + chr2R_4_18410001 chr2R_18410001 RAL-325 360 chr2R 18457204 18457222 chr2R 18457282 18457299 7 77 5.5 5.5 5.5 1.1 95 chr2R 18457204 3` UTR CG30116 - chr2R 18457252 3` UTR CG30116 - chr2R 18457299 3` UTR CG30116 - chr2R_7_18455001 chr2R_18455001 RAL-325 361 chr2R 18483027 18483056 chr2R 18483266 18483281 7 235 2.5 4.0 3.2 1.7 254 chr2R 18483027 intron CG30116 - chr2R 18483154 intron CG30116 - chr2R 18483281 intron CG30116 - chr2R_7_18480001 chr2R_18480001 RAL-325 362 chr2R 18524104 18524132 chr2R 18526783 18526810 4 2679 17.5 12.5 15.0 0.2 2706 chr2R 18524104 intron CG43066 + chr2R 18525457 3` UTR CG43066 + chr2R 18526810 intergenic CG43066 + chr2R_4_18525001 chr2R_18525001 RAL-325 363 chr2R 18553010 18553032 chr2R 18553089 18553112 6 78 9.0 5.0 7.0 0.8 102 chr2R 18553010 intergenic not near genes chr2R 18553061 intergenic not near genes chr2R 18553112 intergenic not near genes chr2R_6_18550001 chr2R_18550001 RAL-325 364 chr2R 18575807 18575828 chr2R 18581987 18582016 3S18 6 6186 2.0 2.5 2.2 1.9 6209 chr2R 18575807 intron GEFmeso - chr2R 18578912 intron GEFmeso - chr2R 18582016 intron GEFmeso - chr2R_6_18575001 chr2R_18575001 RAL-325 365 chr2R 18590871 18590879 chr2R 18600023 18600031 roo 4 9151 4.5 1.5 3.0 1.0 9160 chr2R 18590871 intron GEFmeso - chr2R 18595451 intron GEFmeso - chr2R 18600031 intron GEFmeso - chr2R_4_18595001 chr2R_18595001 RAL-325 366 chr2R 18590886 18590900 chr2R 18600020 18600051 roo 7 9146 2.5 1.5 2.0 2.3 9165 chr2R 18590886 intron GEFmeso - chr2R 18595468 intron GEFmeso - chr2R 18600051 intron GEFmeso - chr2R_7_18595001 chr2R_18595001 RAL-325 367 chr2R 18684292 18684306 chr2R 24946930 24946945 roo 4 6262638 7.0 7.0 7.0 0.5 6262653 chr2R 18684292 3` UTR CG44433 - chr2R 21815618 intergenic not near genes chr2R 24946945 exon CG2790 - chr2R_4_21815001 chr2R_21815001 RAL-325 368 chr2R 18726898 18726922 chr2R 18726980 18727002 4 82 7.5 8.5 8.0 0.4 104 chr2R 18726898 intron Hs3st-A + chr2R 18726950 intron Hs3st-A + chr2R 18727002 intron Hs3st-A + chr2R_4_18725001 chr2R_18725001 RAL-325 369 chr2R 18738207 18738238 chr2R 18738283 18738314 7 76 0.0 0.5 0.2 5.8 107 chr2R 18738207 intron Hs3st-A + chr2R 18738260 intron Hs3st-A + chr2R 18738314 intron Hs3st-A + chr2R_7_18735001 chr2R_18735001 RAL-325 370 chr2R 18871655 18871666 chr2R 18871740 18871744 4 83 13.0 5.5 9.2 0.4 89 chr2R 18871655 intergenic not near genes chr2R 18871700 intergenic not near genes chr2R 18871744 intergenic not near genes chr2R_4_18870001 chr2R_18870001 RAL-325 371 chr2R 18888206 18888234 chr2R 18888392 18888419 5 184 6.5 5.0 5.8 0.7 213 chr2R 18888206 intron sano + chr2R 18888312 intron sano + chr2R 18888419 intron sano + chr2R_5_18885001 chr2R_18885001 RAL-325 372 chr2R 18924272 18924299 chr2R 18924349 18924378 5 79 4.0 3.0 3.5 1.1 106 chr2R 18924272 intron sano + chr2R 18924325 intron sano + chr2R 18924378 intron sano + chr2R_5_18920001 chr2R_18920001 RAL-325 373 chr2R 19359037 19359070 chr2R 19359120 19359151 6 82 4.5 5.5 5.0 1.0 114 chr2R 19359037 intron CG11961 + chr2R 19359094 intron CG11961 + chr2R 19359151 intron CG11961 + chr2R_6_19355001 chr2R_19355001 RAL-325 374 chr2R 19436890 19436919 chr2R 19436967 19436995 6 75 9.0 10.5 9.8 0.6 105 chr2R 19436890 5` UTR Fak - chr2R 19436942 5` UTR Fak - chr2R 19436995 5` UTR Fak - chr2R_6_19435001 chr2R_19435001 RAL-325 375 chr2R 19570136 19570169 chr2R 19570224 19570257 5 88 6.0 6.0 6.0 0.7 121 chr2R 19570136 intron sm - chr2R 19570196 intron sm - chr2R 19570257 intron sm - chr2R_5_19570001 chr2R_19570001 RAL-325 376 chr2R 19776594 19776628 chr2R 19779917 19779951 jockey 9 3321 2.5 4.5 3.5 2.0 3357 chr2R 19776594 intergenic not near genes chr2R 19778272 intergenic not near genes chr2R 19779951 intergenic not near genes chr2R_9_19775001 chr2R_19775001 RAL-325 377 chr2R 19816085 19816096 chr2R 19816198 19816206 4 112 4.0 4.0 4.0 0.8 121 chr2R 19816085 3` UTR Obp56h + chr2R 19816146 3` UTR Obp56h + chr2R 19816206 intergenic Obp56h + chr2R_4_19815001 chr2R_19815001 RAL-325 378 chr2R 19914835 19914870 chr2R 19922255 19922281 mdg1 6 7412 1.0 1.0 1.0 3.0 7446 chr2R 19914835 intergenic not near genes chr2R 19918558 intergenic not near genes chr2R 19922281 intergenic not near genes chr2R_6_19915001 chr2R_19915001 RAL-325 379 chr2R 19967820 19967839 chr2R 19967916 19967935 5 94 13.5 8.5 11.0 0.4 115 chr2R 19967820 intergenic not near genes chr2R 19967878 intergenic not near genes chr2R 19967935 intergenic not near genes chr2R_5_19965001 chr2R_19965001 RAL-325 380 chr2R 20006245 20006273 chr2R 20006324 20006352 4 79 5.5 4.0 4.8 0.7 107 chr2R 20006245 intergenic not near genes chr2R 20006298 intergenic not near genes chr2R 20006352 intergenic not near genes chr2R_4_20005001 chr2R_20005001 RAL-325 381 chr2R 20159173 20159180 chr2R 20159287 20159294 4 116 9.5 6.5 8.0 0.4 121 chr2R 20159173 intergenic not near genes chr2R 20159234 intergenic not near genes chr2R 20159294 intergenic not near genes chr2R_4_20155001 chr2R_20155001 RAL-325 382 chr2R 20161892 20161910 chr2R 20161970 20161985 4 77 3.5 5.0 4.2 0.8 93 chr2R 20161892 intergenic not near genes chr2R 20161938 intergenic not near genes chr2R 20161985 intergenic not near genes chr2R_4_20160001 chr2R_20160001 RAL-325 383 chr2R 20498904 20498930 chr2R 20498982 20499005 4 78 4.0 5.5 4.8 0.7 101 chr2R 20498904 intergenic not near genes chr2R 20498954 intergenic not near genes chr2R 20499005 intergenic not near genes chr2R_4_20495001 chr2R_20495001 RAL-325 384 chr2R 20665946 20665970 chr2R 20666021 20666044 8 74 6.5 4.0 5.2 1.3 98 chr2R 20665946 intron Fem-1 - chr2R 20665995 intron Fem-1 - chr2R 20666044 intron Fem-1 - chr2R_8_20665001 chr2R_20665001 RAL-325 385 chr2R 20700055 20700080 chr2R 20700136 20700163 4 78 6.0 6.5 6.2 0.6 108 chr2R 20700055 intron dpr + chr2R 20700109 intron dpr + chr2R 20700163 intron dpr + chr2R_4_20700001 chr2R_20700001 RAL-325 386 chr2R 20783312 20783328 chr2R 20788083 20788098 F-element 5 4769 1.5 2.0 1.8 1.8 4786 chr2R 20783312 intergenic not near genes chr2R 20785705 intergenic not near genes chr2R 20788098 intergenic CG43666 - chr2R_5_20785001 chr2R_20785001 RAL-325 387 chr2R 21141117 21141140 chr2R 21141213 21141234 4 95 7.5 6.5 7.0 0.5 117 chr2R 21141117 intron Magi - chr2R 21141176 intron Magi - chr2R 21141234 intron Magi - chr2R_4_21140001 chr2R_21140001 RAL-325 388 chr2R 21508076 21508092 chr2R 21508156 21508172 4 79 5.0 7.0 6.0 0.6 96 chr2R 21508076 intron MESK2 + chr2R 21508124 intron MESK2 + chr2R 21508172 intron MESK2 + chr2R_4_21505001 chr2R_21505001 RAL-325 389 chr2R 21671543 21671556 chr2R 21671621 21671634 4 78 7.5 5.5 6.5 0.5 91 chr2R 21671543 3` UTR NC2alpha + chr2R 21671588 3` UTR NC2alpha + chr2R 21671634 intergenic NC2alpha +,CG15676 + chr2R_4_21670001 chr2R_21670001 RAL-325 390 chr2R 21738278 21738307 chr2R 21747438 21747466 roo 4 9158 1.0 0.0 0.5 2.7 9188 chr2R 21738278 intergenic not near genes chr2R 21742872 intergenic not near genes chr2R 21747466 intergenic not near genes chr2R_4_21740001 chr2R_21740001 RAL-325 391 chr2R 21757208 21757241 chr2R 21757289 21757322 5 80 6.5 7.0 6.8 0.6 114 chr2R 21757208 intergenic Grx-1 + chr2R 21757265 intergenic Grx-1 + chr2R 21757322 intergenic Grx-1 + chr2R_5_21755001 chr2R_21755001 RAL-325 392 chr2R 21809531 21809557 chr2R 21817771 21817797 roo 6 8240 1.0 2.0 1.5 2.4 8266 chr2R 21809531 intergenic not near genes chr2R 21813664 intergenic not near genes chr2R 21817797 intergenic not near genes chr2R_6_21810001 chr2R_21810001 RAL-325 393 chr2R 21906275 21906303 chr2R 21906376 21906404 5 100 1.5 2.0 1.8 1.8 129 chr2R 21906275 intron Fili + chr2R 21906340 intron Fili + chr2R 21906404 intron Fili + chr2R_5_21905001 chr2R_21905001 RAL-325 394 chr2R 21973383 21973396 chr2R 21979236 21979239 4 5847 7.5 9.5 8.5 0.4 5856 chr2R 21973383 exon CG9304 + chr2R 21976311 3` UTR CG9304 + chr2R 21979239 exon Gr58b - chr2R_4_21975001 chr2R_21975001 RAL-325 395 chr2R 21985550 21985561 chr2R 21985631 21985642 5 80 2.5 4.0 3.2 1.2 92 chr2R 21985550 intergenic CG30401 - chr2R 21985596 intergenic CG30401 - chr2R 21985642 3` UTR CG30401 - chr2R_5_21985001 chr2R_21985001 RAL-325 396 chr2R 22040156 22040187 chr2R 22040233 22040242 5 68 6.5 8.0 7.2 0.6 86 chr2R 22040156 intergenic not near genes chr2R 22040199 intergenic not near genes chr2R 22040242 intergenic not near genes chr2R_5_22040001 chr2R_22040001 RAL-325 397 chr2R 22072684 22072711 chr2R 22072769 22072795 7 84 4.0 3.5 3.8 1.5 111 chr2R 22072684 intron CG11474 - chr2R 22072740 intron CG11474 - chr2R 22072795 intron CG11474 - chr2R_7_22070001 chr2R_22070001 RAL-325 398 chr2R 22189446 22189471 chr2R 22189572 22189598 6 126 8.5 7.0 7.8 0.7 152 chr2R 22189446 3` UTR Vps35 + chr2R 22189522 3` UTR Vps35 + chr2R 22189598 3` UTR Vps35 + chr2R_6_22185001 chr2R_22185001 RAL-325 399 chr2R 22349692 22349723 chr2R 22351476 22351507 jockey 8 1782 2.0 4.5 3.2 1.9 1815 chr2R 22349692 intron Liprin-gamma - chr2R 22350600 intron Liprin-gamma - chr2R 22351507 intron Liprin-gamma - chr2R_8_22350001 chr2R_22350001 RAL-325 400 chr2R 22360385 22360397 chr2R 22360816 22360827 jockey 5 430 4.5 4.0 4.2 1.0 442 chr2R 22360385 intron Liprin-gamma - chr2R 22360606 intron Liprin-gamma - chr2R 22360827 intron Liprin-gamma - chr2R_5_22360001 chr2R_22360001 RAL-325 401 chr2R 22460382 22460406 chr2R 22460460 22460485 5 77 5.5 9.0 7.2 0.6 103 chr2R 22460382 intron CG10384 + chr2R 22460434 intron CG10384 + chr2R 22460485 intron CG10384 + chr2R_5_22460001 chr2R_22460001 RAL-325 402 chr2R 22525755 22525767 chr2R 22529310 22529325 jockey 5 3555 2.5 0.5 1.5 2.0 3570 chr2R 22525755 intron px - chr2R 22527540 intron px - chr2R 22529325 intron px - chr2R_5_22525001 chr2R_22525001 RAL-325 403 chr2R 22540956 22540971 chr2R 22541034 22541050 4 78 5.5 7.5 6.5 0.5 94 chr2R 22540956 exon px - chr2R 22541003 intron px - chr2R 22541050 intron px - chr2R_4_22540001 chr2R_22540001 RAL-325 404 chr2R 22623461 22623479 chr2R 22623600 22623612 4 137 9.0 9.0 9.0 0.4 151 chr2R 22623461 intron CG33143 + chr2R 22623536 intron CG33143 + chr2R 22623612 intron CG33143 + chr2R_4_22620001 chr2R_22620001 RAL-325 405 chr2R 22774964 22774998 chr2R 22775383 22775410 jockey 10 417 1.0 2.5 1.8 3.6 446 chr2R 22774964 intron CG42260 - chr2R 22775187 intron CG42260 - chr2R 22775410 intron CG42260 - chr2R_10_22775001 chr2R_22775001 RAL-325 406 chr2R 22925347 22925377 chr2R 22925443 22925473 5 94 10.0 14.0 12.0 0.4 126 chr2R 22925347 5` UTR CG42678 + chr2R 22925410 5` UTR CG42678 + chr2R 22925473 5` UTR CG42678 + chr2R_5_22925001 chr2R_22925001 RAL-325 407 chr2R 22945057 22945072 chr2R 22945167 22945183 4 112 12.5 8.0 10.2 0.4 126 chr2R 22945057 exon CG42694 + chr2R 22945120 3` UTR CG42694 + chr2R 22945183 intergenic CG42694 + chr2R_4_22945001 chr2R_22945001 RAL-325 408 chr2R 22958357 22958389 chr2R 22958482 22958513 4 124 2.0 2.0 2.0 1.3 156 chr2R 22958357 intergenic not near genes chr2R 22958435 intergenic not near genes chr2R 22958513 intergenic not near genes chr2R_4_22955001 chr2R_22955001 RAL-325 409 chr2R 23052651 23052687 chr2R 23052725 23052752 13 73 0.5 2.0 1.2 5.9 101 chr2R 23052651 intergenic not near genes chr2R 23052702 intergenic not near genes chr2R 23052752 intergenic not near genes chr2R_13_23050001 chr2R_23050001 RAL-325 410 chr2R 23061759 23061764 chr2R 23061831 23061839 4 75 1.5 3.5 2.5 1.1 80 chr2R 23061759 3` UTR l(2)06496 - chr2R 23061799 3` UTR l(2)06496 - chr2R 23061839 3` UTR l(2)06496 - chr2R_4_23060001 chr2R_23060001 RAL-325 411 chr2R 23402620 23402642 chr2R 23407684 23407718 flea 6 5073 1.5 3.5 2.5 1.7 5098 chr2R 23402620 intergenic CG3520 - chr2R 23405169 intergenic not near genes chr2R 23407718 intergenic not near genes chr2R_6_23405001 chr2R_23405001 RAL-325 412 chr2R 23422649 23422669 chr2R 23422729 23422741 4 78 15.5 12.0 13.8 0.3 92 chr2R 23422649 intron CG9815 - chr2R 23422695 intron CG9815 - chr2R 23422741 intron CG9815 - chr2R_4_23420001 chr2R_23420001 RAL-325 413 chr2R 23437232 23437244 chr2R 23437308 23437311 4 74 2.5 7.0 4.8 0.7 79 chr2R 23437232 intergenic not near genes chr2R 23437272 intergenic not near genes chr2R 23437311 intergenic not near genes chr2R_4_23435001 chr2R_23435001 RAL-325 414 chr2R 23529575 23529607 chr2R 23537148 23537162 412 7 7570 4.0 3.5 3.8 1.5 7587 chr2R 23529575 intron bw - chr2R 23533368 intron bw - chr2R 23537162 exon bw - chr2R_7_23530001 chr2R_23530001 RAL-325 415 chr2R 23594835 23594865 chr2R 23595052 23595082 5 217 4.5 1.0 2.8 1.3 247 chr2R 23594835 intron apt + chr2R 23594958 intron apt + chr2R 23595082 intron apt + chr2R_5_23590001 chr2R_23590001 RAL-325 416 chr2R 23607036 23607190 chr2R 23607117 23607283 14 80 2.0 2.0 2.0 4.7 247 chr2R 23607036 intron CG17664 - chr2R 23607160 intron CG17664 - chr2R 23607283 intron CG17664 - chr2R_14_23605001 chr2R_23605001 RAL-325 417 chr2R 23726230 23726258 chr2R 23726319 23726348 6 88 8.0 13.5 10.8 0.5 118 chr2R 23726230 intron Sesn + chr2R 23726289 intron Sesn + chr2R 23726348 intron Sesn + chr2R_6_23725001 chr2R_23725001 RAL-325 418 chr2R 23784498 23784506 chr2R 23784572 23784584 5 77 5.0 1.0 3.0 1.2 86 chr2R 23784498 intron CG9850 - chr2R 23784541 intron CG9850 - chr2R 23784584 intron CG9850 - chr2R_5_23780001 chr2R_23780001 RAL-325 419 chr2R 23986517 23986544 chr2R 23986596 23986615 11 78 1.5 2.5 2.0 3.7 98 chr2R 23986517 intron Phm - chr2R 23986566 intron Phm - chr2R 23986615 intron,5` UTR Phm -,CG30178 + chr2R_11_23985001 chr2R_23985001 RAL-325 420 chr2R 24031382 24031414 chr2R 24031466 24031498 10 82 2.0 4.0 3.0 2.5 116 chr2R 24031382 5` UTR CG30172 - chr2R 24031440 intergenic CG30172 -,Chi - chr2R 24031498 intergenic Chi -,CG30172 - chr2R_10_24030001 chr2R_24030001 RAL-325 421 chr2R 24045890 24045903 chr2R 24045960 24045984 5 78 8.0 6.0 7.0 0.6 94 chr2R 24045890 intron tsr - chr2R 24045937 intron tsr - chr2R 24045984 intron tsr - chr2R_5_24045001 chr2R_24045001 RAL-325 422 chr2R 24147067 24147090 chr2R 24154645 24154653 412 5 7570 3.0 5.0 4.0 1.0 7586 chr2R 24147067 intron Dat + chr2R 24150860 intron Dat + chr2R 24154653 intron Dat + chr2R_5_24150001 chr2R_24150001 RAL-325 423 chr2R 24177255 24177260 chr2R 24184723 24184744 412 5 7480 1.5 4.0 2.8 1.3 7489 chr2R 24177255 3` UTR Nop60B + chr2R 24181000 intron Nop60B + chr2R 24184744 3` UTR Nop60B + chr2R_5_24180001 chr2R_24180001 RAL-325 424 chr2R 24353426 24353462 chr2R 24361788 24361805 roo 7 8356 2.5 2.5 2.5 2.0 8379 chr2R 24353426 intron,intron bs +,CR44811 - chr2R 24357616 intron,intron bs +,CR44811 - chr2R 24361805 intron,intron bs +,CR44811 - chr2R_7_24355001 chr2R_24355001 RAL-325 425 chr2R 24383827 24383857 chr2R 24383908 24383938 12 80 5.0 4.5 4.8 2.1 111 chr2R 24383827 intron mAChR-A - chr2R 24383882 intron mAChR-A - chr2R 24383938 exon mAChR-A - chr2R_12_24380001 chr2R_24380001 RAL-325 426 chr2R 24415325 24415348 chr2R 24415409 24415433 5 84 10.0 13.0 11.5 0.4 108 chr2R 24415325 intergenic CG45068 +,CG45069 +,prom - chr2R 24415379 intergenic prom -,CG45068 +,CG45069 + chr2R 24415433 3` UTR prom - chr2R_5_24415001 chr2R_24415001 RAL-325 427 chr2R 24430716 24430949 chr2R 24430850 24431035 5 124 6.5 5.5 6.0 0.7 319 chr2R 24430716 intergenic CG15873 - chr2R 24430876 intergenic CG15873 -,Pgam5-2 - chr2R 24431035 intergenic Pgam5-2 -,CG15873 - chr2R_5_24430001 chr2R_24430001 RAL-325 428 chr2R 24590121 24590143 chr2R 24590209 24590215 6 83 15.0 15.0 15.0 0.4 94 chr2R 24590121 intron pio + chr2R 24590168 intron pio + chr2R 24590215 intron pio + chr2R_6_24590001 chr2R_24590001 RAL-325 429 chr2R 24636909 24636930 chr2R 24636993 24637016 4 86 10.0 8.5 9.2 0.4 107 chr2R 24636909 intron CG13594 - chr2R 24636962 intron CG13594 - chr2R 24637016 intron CG13594 - chr2R_4_24635001 chr2R_24635001 RAL-325 430 chr2R 24647591 24647618 chr2R 24655148 24655170 412 9 7553 0.0 4.0 2.0 3.0 7579 chr2R 24647591 intergenic not near genes chr2R 24651380 intergenic not near genes chr2R 24655170 intergenic not near genes chr2R_9_24650001 chr2R_24650001 RAL-325 431 chr2R 24727888 24727918 chr2R 24735396 24735425 mdg1 11 7505 3.5 6.5 5.0 1.8 7537 chr2R 24727888 intron Mid1 - chr2R 24731656 intron Mid1 - chr2R 24735425 intron Mid1 - chr2R_11_24730001 chr2R_24730001 RAL-325 432 chr2R 24763616 24763624 chr2R 24765592 24765596 G2 4 1974 3.5 4.5 4.0 0.8 1980 chr2R 24763616 exon CG3894 + chr2R 24764606 intron CG3894 + chr2R 24765596 exon CG3894 + chr2R_4_24760001 chr2R_24760001 RAL-325 433 chr2R 24763632 24763644 chr2R 24765589 24765603 G2 8 1962 2.0 4.0 3.0 2.0 1971 chr2R 24763632 exon CG3894 + chr2R 24764618 intron CG3894 + chr2R 24765603 exon CG3894 + chr2R_8_24760001 chr2R_24760001 RAL-325 434 chr2R 24859848 24859869 chr2R 24859928 24859948 8 82 1.0 0.5 0.8 4.4 100 chr2R 24859848 5` UTR CR44829 + chr2R 24859898 5` UTR CR44829 + chr2R 24859948 5` UTR CR44829 + chr2R_8_24855001 chr2R_24855001 RAL-325 435 chr2R 24884051 24884077 chr2R 24884132 24884158 9 80 2.0 4.5 3.2 2.1 107 chr2R 24884051 intron NKAIN + chr2R 24884104 intron NKAIN + chr2R 24884158 intron NKAIN + chr2R_9_24880001 chr2R_24880001 RAL-325 436 chr2R 18684366 18684394 chr2R 24946853 24946888 roo 10 6262491 13.0 12.5 12.8 0.7 6262522 chr2R 18684366 3` UTR CG44433 - chr2R 21815627 intergenic not near genes chr2R 24946888 exon CG2790 - chr2R_10_21815001 chr2R_21815001 RAL-325 437 chr2R 25014546 25014573 chr2R 25014619 25014648 6 72 3.0 3.5 3.2 1.4 102 chr2R 25014546 intron uzip + chr2R 25014597 intron uzip + chr2R 25014648 intron uzip + chr2R_6_25010001 chr2R_25010001 RAL-325 438 chr2R 25101294 25101309 chr2R 25101396 25101410 4 101 5.5 8.0 6.8 0.5 116 chr2R 25101294 intron lov - chr2R 25101352 intron lov - chr2R 25101410 intron lov - chr2R_4_25100001 chr2R_25100001 RAL-325 439 chr3L 110220 110237 chr3L 119386 119404 roo 4 9167 1.5 2.5 2.0 1.3 9184 chr3L 110220 intergenic not near genes chr3L 114812 intergenic not near genes chr3L 119404 intergenic not near genes chr3L_4_110001 chr3L_110001 RAL-325 440 chr3L 402693 402716 chr3L 409745 409766 297 10 7052 7.0 5.5 6.2 1.4 7073 chr3L 402693 intergenic not near genes chr3L 406230 intergenic not near genes chr3L 409766 intergenic not near genes chr3L_10_405001 chr3L_405001 RAL-325 441 chr3L 470927 470949 chr3L 471153 471172 6 225 0.0 1.5 0.8 3.3 245 chr3L 470927 intron klar - chr3L 471050 intron klar - chr3L 471172 intron klar - chr3L_6_470001 chr3L_470001 RAL-325 442 chr3L 491646 491674 chr3L 491728 491752 6 81 1.0 1.0 1.0 3.0 106 chr3L 491646 intron klar - chr3L 491699 intron klar - chr3L 491752 intron klar - chr3L_6_490001 chr3L_490001 RAL-325 443 chr3L 705896 705931 chr3L 705992 706026 7 96 3.5 3.5 3.5 1.6 130 chr3L 705896 intergenic CG13895 -,CR44514 + chr3L 705961 3` UTR CG13895 - chr3L 706026 3` UTR CG13895 - chr3L_7_705001 chr3L_705001 RAL-325 444 chr3L 858007 858014 chr3L 866487 866495 Tirant 4 8480 5.5 3.5 4.5 0.7 8488 chr3L 858007 intergenic not near genes chr3L 862251 intergenic not near genes chr3L 866495 intergenic CG12502 + chr3L_4_860001 chr3L_860001 RAL-325 445 chr3L 925174 925203 chr3L 932600 932629 mdg1 9 7425 1.5 3.0 2.2 2.8 7455 chr3L 925174 intron Glut1 + chr3L 928902 intron Glut1 + chr3L 932629 intron Glut1 + chr3L_9_925001 chr3L_925001 RAL-325 446 chr3L 933910 933941 chr3L 934013 934034 7 100 2.0 1.0 1.5 2.8 124 chr3L 933910 intron Glut1 + chr3L 933972 intron Glut1 + chr3L 934034 intron Glut1 + chr3L_7_930001 chr3L_930001 RAL-325 447 chr3L 939771 939803 chr3L 940890 940907 jockey 7 1116 3.5 4.0 3.8 1.5 1136 chr3L 939771 intron Glut1 + chr3L 940339 intron Glut1 + chr3L 940907 intron Glut1 + chr3L_7_940001 chr3L_940001 RAL-325 448 chr3L 961024 961043 chr3L 961117 961136 5 92 1.5 1.0 1.2 2.3 112 chr3L 961024 intron Glut1 + chr3L 961080 intron Glut1 + chr3L 961136 intron Glut1 + chr3L_5_960001 chr3L_960001 RAL-325 449 chr3L 1003056 1003076 chr3L 1003132 1003153 5 77 2.0 2.0 2.0 1.7 97 chr3L 1003056 intron trio - chr3L 1003104 intron trio - chr3L 1003153 intron trio - chr3L_5_1000001 chr3L_1000001 RAL-325 450 chr3L 1039301 1039334 chr3L 1039758 1039789 9 456 3.0 4.5 3.8 1.9 488 chr3L 1039301 intron bab1 - chr3L 1039545 intron bab1 - chr3L 1039789 intron bab1 - chr3L_9_1035001 chr3L_1035001 RAL-325 451 chr3L 1040558 1040578 chr3L 1040642 1040662 7 84 1.5 2.0 1.8 2.5 104 chr3L 1040558 intron bab1 - chr3L 1040610 intron bab1 - chr3L 1040662 intron bab1 - chr3L_7_1040001 chr3L_1040001 RAL-325 452 chr3L 1042963 1042983 chr3L 1043041 1043061 8 76 2.5 2.5 2.5 2.3 98 chr3L 1042963 intron bab1 - chr3L 1043012 intron bab1 - chr3L 1043061 intron bab1 - chr3L_8_1040001 chr3L_1040001 RAL-325 453 chr3L 1109634 1109661 chr3L 1109720 1109727 6 80 3.0 2.0 2.5 1.7 93 chr3L 1109634 intergenic not near genes chr3L 1109680 intergenic not near genes chr3L 1109727 intergenic not near genes chr3L_6_1105001 chr3L_1105001 RAL-325 454 chr3L 1145241 1145261 chr3L 1145320 1145340 4 79 2.0 3.5 2.8 1.1 99 chr3L 1145241 intron bab2 - chr3L 1145290 intron bab2 - chr3L 1145340 intron bab2 - chr3L_4_1145001 chr3L_1145001 RAL-325 455 chr3L 1219598 1219619 chr3L 1227329 1227350 412 4 7730 3.5 3.0 3.2 1.0 7752 chr3L 1219598 intron mwh + chr3L 1223474 intron mwh + chr3L 1227350 intron mwh + chr3L_4_1220001 chr3L_1220001 RAL-325 456 chr3L 1257635 1257653 chr3L 1257715 1257731 5 79 0.0 4.0 2.0 1.7 96 chr3L 1257635 intron CG9134 + chr3L 1257683 intron CG9134 + chr3L 1257731 intron CG9134 + chr3L_5_1255001 chr3L_1255001 RAL-325 457 chr3L 1310981 1311011 chr3L 1315853 1315871 10 4867 31.5 25.0 28.2 0.3 4890 chr3L 1310981 exon CG2469 + chr3L 1313426 intergenic CG9186 -,CG9153 + chr3L 1315871 exon CG9153 + chr3L_10_1310001 chr3L_1310001 RAL-325 458 chr3L 1321566 1321587 chr3L 1321760 1321787 6 199 3.5 2.0 2.8 1.6 221 chr3L 1321566 intron Myo61F + chr3L 1321676 intron Myo61F + chr3L 1321787 intron Myo61F + chr3L_6_1320001 chr3L_1320001 RAL-325 459 chr3L 1347175 1347193 chr3L 1347241 1347258 4 72 2.5 3.0 2.8 1.1 83 chr3L 1347175 intron Ptp61F - chr3L 1347216 intron Ptp61F - chr3L 1347258 intron Ptp61F - chr3L_4_1345001 chr3L_1345001 RAL-325 460 chr3L 1385180 1385210 chr3L 1385265 1385296 6 86 1.5 2.0 1.8 2.1 116 chr3L 1385180 intron,intron Ptp61F -,ru + chr3L 1385238 intron,intron Ptp61F -,ru + chr3L 1385296 intron,intron Ptp61F -,ru + chr3L_6_1385001 chr3L_1385001 RAL-325 461 chr3L 1396744 1396753 chr3L 1396822 1396832 6 81 1.5 6.5 4.0 1.2 88 chr3L 1396744 intron Ptp61F - chr3L 1396788 intron Ptp61F - chr3L 1396832 intron Ptp61F - chr3L_6_1395001 chr3L_1395001 RAL-325 462 chr3L 1463416 1463449 chr3L 1463496 1463498 8 74 3.5 4.0 3.8 1.7 82 chr3L 1463416 intron Ptp61F - chr3L 1463457 intron Ptp61F - chr3L 1463498 intron Ptp61F - chr3L_8_1460001 chr3L_1460001 RAL-325 463 chr3L 1477394 1477419 chr3L 1477481 1477503 8 88 3.5 0.0 1.8 2.9 109 chr3L 1477394 intron stet - chr3L 1477448 intron stet - chr3L 1477503 intron stet - chr3L_8_1475001 chr3L_1475001 RAL-325 464 chr3L 1505999 1506028 chr3L 1513595 1513625 17.6 10 7596 3.0 2.5 2.8 2.6 7626 chr3L 1505999 intron,intron Psa +,cue - chr3L 1509812 intron,intron Psa +,cue - chr3L 1513625 intron,intron Psa +,cue - chr3L_10_1505001 chr3L_1505001 RAL-325 465 chr3L 1571479 1571487 chr3L 1571562 1571572 4 84 1.5 2.5 2.0 1.3 93 chr3L 1571479 intron CG12004 + chr3L 1571526 intron CG12004 + chr3L 1571572 intron CG12004 + chr3L_4_1570001 chr3L_1570001 RAL-325 466 chr3L 1684028 1684046 chr3L 1684106 1684124 6 74 1.5 1.5 1.5 2.4 96 chr3L 1684028 intron CG7991 + chr3L 1684076 intron CG7991 + chr3L 1684124 intron CG7991 + chr3L_6_1680001 chr3L_1680001 RAL-325 467 chr3L 1740860 1740883 chr3L 1741103 1741126 pogo 5 240 2.5 4.5 3.5 1.1 266 chr3L 1740860 intron Gk + chr3L 1740993 intron Gk + chr3L 1741126 intron Gk + chr3L_5_1740001 chr3L_1740001 RAL-325 468 chr3L 1925093 1925111 chr3L 1925162 1925198 8 83 2.5 3.0 2.8 2.1 105 chr3L 1925093 intron Dbx + chr3L 1925146 intron Dbx + chr3L 1925198 intron Dbx + chr3L_8_1925001 chr3L_1925001 RAL-325 469 chr3L 1932310 1932332 chr3L 1932464 1932486 4 154 3.0 2.0 2.5 1.1 176 chr3L 1932310 intron Dbx + chr3L 1932398 intron Dbx + chr3L 1932486 intron Dbx + chr3L_4_1930001 chr3L_1930001 RAL-325 470 chr3L 2016831 2016865 chr3L 2016917 2016944 7 83 1.0 1.0 1.0 3.5 113 chr3L 2016831 intergenic not near genes chr3L 2016888 intergenic not near genes chr3L 2016944 intergenic not near genes chr3L_7_2015001 chr3L_2015001 RAL-325 471 chr3L 2108255 2108279 chr3L 2113459 2113483 copia 10 5204 2.0 2.5 2.2 3.1 5228 chr3L 2108255 intron sls - chr3L 2110869 intron sls - chr3L 2113483 intron sls - chr3L_10_2110001 chr3L_2110001 RAL-325 472 chr3L 2168776 2168802 chr3L 2168866 2168893 9 90 2.0 2.0 2.0 3.0 117 chr3L 2168776 exon CG15879 - chr3L 2168834 intron CG15879 - chr3L 2168893 intron CG15879 - chr3L_9_2165001 chr3L_2165001 RAL-325 473 chr3L 2192786 2192796 chr3L 2193017 2193026 4 231 0.5 2.5 1.5 1.6 240 chr3L 2192786 intergenic not near genes chr3L 2192906 intergenic not near genes chr3L 2193026 intergenic not near genes chr3L_4_2190001 chr3L_2190001 RAL-325 474 chr3L 2308004 2308034 chr3L 2308109 2308140 5 101 3.0 2.5 2.8 1.3 136 chr3L 2308004 intergenic not near genes chr3L 2308072 intergenic not near genes chr3L 2308140 intergenic not near genes chr3L_5_2305001 chr3L_2305001 RAL-325 475 chr3L 2321159 2321181 chr3L 2321235 2321258 5 76 1.5 1.5 1.5 2.0 99 chr3L 2321159 intergenic not near genes chr3L 2321208 intergenic not near genes chr3L 2321258 intergenic not near genes chr3L_5_2320001 chr3L_2320001 RAL-325 476 chr3L 2331581 2331610 chr3L 2331657 2331687 5 77 2.5 1.0 1.8 1.8 106 chr3L 2331581 intron MsR1 + chr3L 2331634 intron MsR1 + chr3L 2331687 intron MsR1 + chr3L_5_2330001 chr3L_2330001 RAL-325 477 chr3L 2447518 2447538 chr3L 2456664 2456692 roo 8 9154 2.0 2.0 2.0 2.7 9174 chr3L 2447518 intron CG45186 + chr3L 2452105 intron CG45186 + chr3L 2456692 intron CG45186 + chr3L_8_2450001 chr3L_2450001 RAL-325 478 chr3L 2478882 2479030 chr3L 2478962 2479122 4 90 3.0 2.5 2.8 1.1 240 chr3L 2478882 intron CG45186 + chr3L 2479002 intron CG45186 + chr3L 2479122 intron CG45186 + chr3L_4_2475001 chr3L_2475001 RAL-325 479 chr3L 2485589 2485613 chr3L 2485666 2485675 4 74 1.0 1.0 1.0 2.0 86 chr3L 2485589 intron CG45186 + chr3L 2485632 intron CG45186 + chr3L 2485675 intron CG45186 + chr3L_4_2485001 chr3L_2485001 RAL-325 480 chr3L 2534613 2534647 chr3L 2534696 2534728 9 82 0.0 3.5 1.8 3.2 115 chr3L 2534613 intron Spn - chr3L 2534670 intron Spn - chr3L 2534728 exon Spn - chr3L_9_2530001 chr3L_2530001 RAL-325 481 chr3L 2561526 2561559 chr3L 2561603 2561636 8 74 2.5 2.0 2.2 2.5 110 chr3L 2561526 intron msn - chr3L 2561581 intron msn - chr3L 2561636 intron msn - chr3L_8_2560001 chr3L_2560001 RAL-325 482 chr3L 2683951 2683977 chr3L 2684026 2684053 8 76 2.0 3.5 2.8 2.1 102 chr3L 2683951 intron Fife - chr3L 2684002 intron Fife - chr3L 2684053 intron Fife - chr3L_8_2680001 chr3L_2680001 RAL-325 483 chr3L 2711025 2711034 chr3L 2711122 2711131 4 97 3.5 0.0 1.8 1.4 106 chr3L 2711025 intron Fife - chr3L 2711078 intron Fife - chr3L 2711131 intron Fife - chr3L_4_2710001 chr3L_2710001 RAL-325 484 chr3L 2906068 2906089 chr3L 2906149 2906175 7 84 5.0 2.0 3.5 1.6 107 chr3L 2906068 intron Shab + chr3L 2906122 intron Shab + chr3L 2906175 intron Shab + chr3L_7_2905001 chr3L_2905001 RAL-325 485 chr3L 2911776 2911809 chr3L 2911870 2911897 4 89 0.5 1.0 0.8 2.2 121 chr3L 2911776 intron Shab + chr3L 2911836 intron Shab + chr3L 2911897 intron Shab + chr3L_4_2910001 chr3L_2910001 RAL-325 486 chr3L 2987710 2987732 chr3L 2987792 2987814 8 79 0.5 0.5 0.5 5.3 104 chr3L 2987710 intergenic not near genes chr3L 2987762 intergenic not near genes chr3L 2987814 intergenic not near genes chr3L_8_2985001 chr3L_2985001 RAL-325 487 chr3L 3028346 3028362 chr3L 3028423 3028425 4 71 6.0 2.0 4.0 0.8 79 chr3L 3028346 intergenic not near genes chr3L 3028386 intergenic not near genes chr3L 3028425 intergenic not near genes chr3L_4_3025001 chr3L_3025001 RAL-325 488 chr3L 3028367 3028373 chr3L 3028422 3028443 4 67 3.5 2.0 2.8 1.1 76 chr3L 3028367 intergenic not near genes chr3L 3028405 intergenic not near genes chr3L 3028443 intergenic not near genes chr3L_4_3025001 chr3L_3025001 RAL-325 489 chr3L 3310303 3310321 chr3L 3310381 3310400 4 78 2.5 2.0 2.2 1.2 97 chr3L 3310303 intron ZnT63C + chr3L 3310352 intron ZnT63C + chr3L 3310400 intron ZnT63C + chr3L_4_3310001 chr3L_3310001 RAL-325 490 chr3L 3388583 3388603 chr3L 3388675 3388678 4 88 6.0 2.5 4.2 0.8 95 chr3L 3388583 intergenic not near genes chr3L 3388630 intergenic not near genes chr3L 3388678 intergenic not near genes chr3L_4_3385001 chr3L_3385001 RAL-325 491 chr3L 3470179 3470186 chr3L 3470254 3470261 4 76 1.0 1.0 1.0 2.0 82 chr3L 3470179 intron CG14971 - chr3L 3470220 intron CG14971 - chr3L 3470261 intron CG14971 - chr3L_4_3470001 chr3L_3470001 RAL-325 492 chr3L 3475105 3475110 chr3L 3475518 3475552 jockey 4 436 0.5 1.0 0.8 2.2 447 chr3L 3475105 intron CG42324 + chr3L 3475328 intron CG42324 + chr3L 3475552 intron CG42324 + chr3L_4_3475001 chr3L_3475001 RAL-325 493 chr3L 3763760 3763777 chr3L 3763839 3763855 4 79 1.5 0.0 0.8 2.2 95 chr3L 3763760 intron CG32264 - chr3L 3763808 intron CG32264 - chr3L 3763855 intron CG32264 - chr3L_4_3760001 chr3L_3760001 RAL-325 494 chr3L 3798041 3798063 chr3L 3798120 3798142 5 78 1.5 2.5 2.0 1.7 101 chr3L 3798041 intron CG32264 - chr3L 3798092 intron CG32264 - chr3L 3798142 intron CG32264 - chr3L_5_3795001 chr3L_3795001 RAL-325 495 chr3L 3814896 3815078 chr3L 3814982 3815158 5 82 2.5 2.5 2.5 1.4 262 chr3L 3814896 intron,intron Scsalpha +,CR43932 - chr3L 3815027 intron,3` UTR Scsalpha +,CR43932 - chr3L 3815158 intron,intron Scsalpha +,CR43932 - chr3L_5_3815001 chr3L_3815001 RAL-325 496 chr3L 4015746 4015757 chr3L 4015815 4015840 5 79 1.5 2.0 1.8 1.8 94 chr3L 4015746 intergenic not near genes chr3L 4015793 intergenic not near genes chr3L 4015840 intergenic not near genes chr3L_5_4015001 chr3L_4015001 RAL-325 497 chr3L 4516839 4516859 chr3L 4516912 4516936 6 76 4.5 3.5 4.0 1.2 97 chr3L 4516839 intron Tie - chr3L 4516888 intron Tie - chr3L 4516936 intron Tie - chr3L_6_4515001 chr3L_4515001 RAL-325 498 chr3L 4536358 4536372 chr3L 4536459 4536472 5 100 5.0 3.5 4.2 1.0 114 chr3L 4536358 exon CG11353 + chr3L 4536415 intron CG11353 + chr3L 4536472 intron CG11353 + chr3L_5_4535001 chr3L_4535001 RAL-325 499 chr3L 4676042 4676053 chr3L 4676120 4676134 6 80 1.0 0.0 0.5 4.0 92 chr3L 4676042 intron axo - chr3L 4676088 intron axo - chr3L 4676134 intron axo - chr3L_6_4675001 chr3L_4675001 RAL-325 500 chr3L 4837890 4837918 chr3L 4837969 4837997 6 78 2.5 2.5 2.5 1.7 107 chr3L 4837890 3` UTR CG13707 - chr3L 4837944 3` UTR CG13707 - chr3L 4837997 3` UTR CG13707 - chr3L_6_4835001 chr3L_4835001 RAL-325 501 chr3L 4840405 4840420 chr3L 4840508 4840510 4 102 0.5 2.5 1.5 1.6 105 chr3L 4840405 intergenic CG13707 - chr3L 4840458 intergenic CG13707 - chr3L 4840510 intergenic CG13707 - chr3L_4_4840001 chr3L_4840001 RAL-325 502 chr3L 4858323 4858334 chr3L 4858393 4858423 6 82 5.0 4.5 4.8 1.0 100 chr3L 4858323 intergenic not near genes chr3L 4858373 intergenic not near genes chr3L 4858423 intergenic not near genes chr3L_6_4855001 chr3L_4855001 RAL-325 503 chr3L 5034161 5034182 chr3L 5043312 5043334 roo 4 9152 1.0 2.0 1.5 1.6 9173 chr3L 5034161 intron Con - chr3L 5038748 intron Con - chr3L 5043334 intron Con - chr3L_4_5035001 chr3L_5035001 RAL-325 504 chr3L 5045453 5045484 chr3L 5050234 5050264 Doc 4 4781 0.5 1.5 1.0 2.0 4811 chr3L 5045453 intron Con - chr3L 5047858 intron Con - chr3L 5050264 intron Con - chr3L_4_5045001 chr3L_5045001 RAL-325 505 chr3L 5104495 5104511 chr3L 5124627 5124645 7 20133 1.5 3.0 2.2 2.2 20150 chr3L 5104495 intergenic not near genes chr3L 5114570 intergenic not near genes chr3L 5124645 intergenic not near genes chr3L_7_5110001 chr3L_5110001 RAL-325 506 chr3L 5252066 5252096 chr3L 5253111 5253131 6 1042 0.5 2.0 1.2 2.7 1065 chr3L 5252066 intron shep - chr3L 5252598 intron shep - chr3L 5253131 intron shep - chr3L_6_5250001 chr3L_5250001 RAL-325 507 chr3L 5271168 5271196 chr3L 5271246 5271274 4 78 0.0 0.0 0.0 4.0 106 chr3L 5271168 intron shep - chr3L 5271221 intron shep - chr3L 5271274 intron shep - chr3L_4_5270001 chr3L_5270001 RAL-325 508 chr3L 5339838 5339842 chr3L 5340076 5340086 4 242 1.5 1.5 1.5 1.6 248 chr3L 5339838 intergenic not near genes chr3L 5339962 intergenic not near genes chr3L 5340086 intergenic not near genes chr3L_4_5335001 chr3L_5335001 RAL-325 509 chr3L 5388204 5388214 chr3L 5388527 5388538 4 322 2.5 2.0 2.2 1.2 334 chr3L 5388204 intergenic not near genes chr3L 5388371 intergenic not near genes chr3L 5388538 intergenic not near genes chr3L_4_5385001 chr3L_5385001 RAL-325 510 chr3L 5388216 5388229 chr3L 5388524 5388550 7 316 1.5 2.0 1.8 2.5 334 chr3L 5388216 intergenic not near genes chr3L 5388383 intergenic not near genes chr3L 5388550 intergenic not near genes chr3L_7_5385001 chr3L_5385001 RAL-325 511 chr3L 5926323 5926350 chr3L 5926503 5926539 BS 9 182 0.5 1.5 1.0 4.5 216 chr3L 5926323 intron Vap-33B + chr3L 5926431 intron Vap-33B + chr3L 5926539 intron Vap-33B + chr3L_9_5925001 chr3L_5925001 RAL-325 512 chr3L 6052654 6052667 chr3L 6052739 6052752 4 85 10.0 8.5 9.2 0.4 98 chr3L 6052654 exon Jon65Aii + chr3L 6052703 intron Jon65Aii + chr3L 6052752 exon Jon65Aii + chr3L_4_6050001 chr3L_6050001 RAL-325 513 chr3L 6116700 6116722 chr3L 6116783 6116803 6 83 1.0 2.5 1.8 2.1 103 chr3L 6116700 intron Ets65A + chr3L 6116752 intron Ets65A + chr3L 6116803 intron Ets65A + chr3L_6_6115001 chr3L_6115001 RAL-325 514 chr3L 6162356 6162386 chr3L 6162436 6162467 7 78 0.5 1.5 1.0 3.5 111 chr3L 6162356 intergenic CR45744 - chr3L 6162412 intergenic CR45744 - chr3L 6162467 intergenic CR45744 - chr3L_7_6160001 chr3L_6160001 RAL-325 515 chr3L 6185604 6185632 chr3L 6185678 6185705 7 75 2.5 2.0 2.2 2.2 101 chr3L 6185604 exon CG43293 + chr3L 6185654 intron CG43293 + chr3L 6185705 exon CG43293 + chr3L_7_6185001 chr3L_6185001 RAL-325 516 chr3L 6220915 6220946 chr3L 6230067 6230094 roo 15 9149 2.5 4.0 3.2 3.6 9179 chr3L 6220915 5` UTR pncr008:3L + chr3L 6225504 intergenic not near genes chr3L 6230094 intergenic not near genes chr3L_15_6225001 chr3L_6225001 RAL-325 517 chr3L 6405656 6405691 chr3L 6432120 6432154 roo 4 26464 1.5 2.0 1.8 1.4 26498 chr3L 6405656 intron CG42747 + chr3L 6418905 intron CG42747 + chr3L 6432154 intron CG42747 + chr3L_4_6415001 chr3L_6415001 RAL-325 518 chr3L 6562836 6562864 chr3L 6562916 6562943 5 76 0.5 1.5 1.0 2.5 107 chr3L 6562836 intron CG18769 + chr3L 6562890 intron CG18769 + chr3L 6562943 intron CG18769 + chr3L_5_6560001 chr3L_6560001 RAL-325 519 chr3L 6570213 6570240 chr3L 6570658 6570686 10 445 3.0 1.5 2.2 3.1 473 chr3L 6570213 intron,intron CG18769 +,jv - chr3L 6570450 intron,intron CG18769 +,jv - chr3L 6570686 intron,intron CG18769 +,jv - chr3L_10_6570001 chr3L_6570001 RAL-325 520 chr3L 6610194 6610223 chr3L 6610299 6610328 4 100 0.5 1.5 1.0 2.0 134 chr3L 6610194 intron CG8398 + chr3L 6610261 intron CG8398 + chr3L 6610328 intron CG8398 + chr3L_4_6610001 chr3L_6610001 RAL-325 521 chr3L 6887530 6887541 chr3L 6895020 6895033 roo 7 7490 3.0 2.0 2.5 2.0 7503 chr3L 6887530 intergenic not near genes chr3L 6891282 intergenic not near genes chr3L 6895033 intergenic not near genes chr3L_7_6890001 chr3L_6890001 RAL-325 522 chr3L 6994889 6994916 chr3L 6995499 6995521 BS 9 610 1.0 6.0 3.5 2.0 632 chr3L 6994889 intergenic bin + chr3L 6995205 intergenic not near genes chr3L 6995521 intergenic not near genes chr3L_9_6995001 chr3L_6995001 RAL-325 523 chr3L 7187403 7187420 chr3L 7187485 7187502 5 82 0.0 0.0 0.0 5.0 99 chr3L 7187403 intron Dscam2 - chr3L 7187452 intron Dscam2 - chr3L 7187502 intron Dscam2 - chr3L_5_7185001 chr3L_7185001 RAL-325 524 chr3L 7285458 7285476 chr3L 7285536 7285554 5 77 0.5 2.0 1.2 2.3 96 chr3L 7285458 intron unc-13-4A - chr3L 7285506 intron unc-13-4A - chr3L 7285554 intron unc-13-4A - chr3L_5_7285001 chr3L_7285001 RAL-325 525 chr3L 7355677 7355704 chr3L 7362670 7362698 6 6996 37.5 33.5 35.5 0.2 7021 chr3L 7355677 exon CTCF - chr3L 7359188 exon pst - chr3L 7362698 exon Sec63 + chr3L_6_7355001 chr3L_7355001 RAL-325 526 chr3L 7377317 7377346 chr3L 7380422 7380450 297 8 3104 2.0 3.5 2.8 2.1 3133 chr3L 7377317 intron SMSr - chr3L 7378884 intron SMSr - chr3L 7380450 intron SMSr - chr3L_8_7375001 chr3L_7375001 RAL-325 527 chr3L 7426022 7426040 chr3L 7426400 7426419 4 380 2.0 0.5 1.2 1.8 397 chr3L 7426022 intron CG42458 + chr3L 7426220 intron CG42458 + chr3L 7426419 intron CG42458 + chr3L_4_7425001 chr3L_7425001 RAL-325 528 chr3L 7498758 7498776 chr3L 7503533 7503553 F-element 5 4776 2.0 1.0 1.5 2.0 4795 chr3L 7498758 5` UTR CG8539 - chr3L 7501156 intergenic not near genes chr3L 7503553 intergenic not near genes chr3L_5_7500001 chr3L_7500001 RAL-325 529 chr3L 7559477 7559502 chr3L 7559558 7559584 7 79 3.5 6.0 4.8 1.2 107 chr3L 7559477 intron CG14837 - chr3L 7559530 intron CG14837 - chr3L 7559584 intron CG14837 - chr3L_7_7555001 chr3L_7555001 RAL-325 530 chr3L 7752148 7752177 chr3L 7752251 7752284 14 102 3.5 1.0 2.2 4.4 136 chr3L 7752148 intron CG32373 + chr3L 7752216 intron CG32373 + chr3L 7752284 intron CG32373 + chr3L_14_7750001 chr3L_7750001 RAL-325 531 chr3L 7760092 7760102 chr3L 7760168 7760178 5 75 0.0 0.5 0.2 4.2 86 chr3L 7760092 intergenic Hn + chr3L 7760135 intergenic Hn + chr3L 7760178 intergenic Hn + chr3L_5_7760001 chr3L_7760001 RAL-325 532 chr3L 7761429 7761460 chr3L 7761505 7761537 7 75 2.5 2.5 2.5 2.0 108 chr3L 7761429 intron Hn + chr3L 7761483 intron Hn + chr3L 7761537 intron Hn + chr3L_7_7760001 chr3L_7760001 RAL-325 533 chr3L 7886523 7886546 chr3L 7889036 7889064 Stalker4 6 2517 0.0 1.0 0.5 4.0 2541 chr3L 7886523 intron CG32365 + chr3L 7887794 intron CG32365 + chr3L 7889064 intron CG32365 + chr3L_6_7885001 chr3L_7885001 RAL-325 534 chr3L 7902427 7902457 chr3L 7902506 7902540 12 80 1.0 0.0 0.5 8.0 113 chr3L 7902427 intron pbl - chr3L 7902484 intron pbl - chr3L 7902540 intron pbl - chr3L_12_7900001 chr3L_7900001 RAL-325 535 chr3L 8217057 8217079 chr3L 8217363 8217385 6 304 5.0 4.0 4.5 1.1 328 chr3L 8217057 intergenic not near genes chr3L 8217221 intergenic not near genes chr3L 8217385 intergenic not near genes chr3L_6_8215001 chr3L_8215001 RAL-325 536 chr3L 8295793 8295799 chr3L 8295949 8295957 4 158 6.0 3.5 4.8 0.7 164 chr3L 8295793 intergenic CG7201 - chr3L 8295875 intergenic not near genes chr3L 8295957 intergenic not near genes chr3L_4_8295001 chr3L_8295001 RAL-325 537 chr3L 8295810 8295828 chr3L 8295948 8295956 7 151 2.5 3.5 3.0 1.8 146 chr3L 8295810 intergenic CG7201 - chr3L 8295883 intergenic not near genes chr3L 8295956 intergenic not near genes chr3L_7_8295001 chr3L_8295001 RAL-325 538 chr3L 8414104 8414122 chr3L 8414185 8414203 9 81 1.5 2.0 1.8 3.2 99 chr3L 8414104 intron Exo70 + chr3L 8414154 intron Exo70 + chr3L 8414203 intron Exo70 + chr3L_9_8410001 chr3L_8410001 RAL-325 539 chr3L 8643574 8643600 chr3L 8643650 8643673 6 73 2.5 3.0 2.8 1.6 99 chr3L 8643574 3` UTR Cpr66D + chr3L 8643624 intergenic Cpr66D + chr3L 8643673 intergenic Cpr66D + chr3L_6_8640001 chr3L_8640001 RAL-325 540 chr3L 8690617 8690634 chr3L 8690851 8690870 5 240 1.5 2.5 2.0 1.7 253 chr3L 8690617 intergenic not near genes chr3L 8690744 intergenic not near genes chr3L 8690870 intergenic not near genes chr3L_5_8690001 chr3L_8690001 RAL-325 541 chr3L 8791288 8791301 chr3L 8796688 8796691 I-element 4 5407 4.0 0.0 2.0 1.3 5403 chr3L 8791288 exon Fhos + chr3L 8793990 intron Fhos + chr3L 8796691 intron Fhos + chr3L_4_8790001 chr3L_8790001 RAL-325 542 chr3L 8839734 8839740 chr3L 8839814 8839820 4 80 3.0 1.5 2.2 1.2 86 chr3L 8839734 intron dally + chr3L 8839777 intron dally + chr3L 8839820 intron dally + chr3L_4_8835001 chr3L_8835001 RAL-325 543 chr3L 8862777 8862802 chr3L 8862854 8862867 10 74 0.5 3.5 2.0 3.3 90 chr3L 8862777 intron dally + chr3L 8862822 intron dally + chr3L 8862867 intron dally + chr3L_10_8860001 chr3L_8860001 RAL-325 544 chr3L 8875188 8875211 chr3L 8875277 8875302 6 89 2.5 1.0 1.8 2.1 114 chr3L 8875188 intron dally + chr3L 8875245 intron dally + chr3L 8875302 intron dally + chr3L_6_8875001 chr3L_8875001 RAL-325 545 chr3L 8890169 8890191 chr3L 8890282 8890303 10 111 2.0 1.5 1.8 3.6 134 chr3L 8890169 3` UTR dally + chr3L 8890236 3` UTR dally + chr3L 8890303 3` UTR dally + chr3L_10_8890001 chr3L_8890001 RAL-325 546 chr3L 9086925 9086934 chr3L 9086985 9087016 4 76 3.0 2.5 2.8 1.1 91 chr3L 9086925 exon Tequila + chr3L 9086970 exon Tequila + chr3L 9087016 exon Tequila + chr3L_4_9085001 chr3L_9085001 RAL-325 547 chr3L 9103623 9103654 chr3L 9103702 9103735 5 83 0.0 0.5 0.2 4.2 112 chr3L 9103623 intron bol - chr3L 9103679 intron bol - chr3L 9103735 intron bol - chr3L_5_9100001 chr3L_9100001 RAL-325 548 chr3L 9130558 9130579 chr3L 9134318 9134339 412 8 3760 3.0 2.5 2.8 2.1 3781 chr3L 9130558 intergenic bol - chr3L 9132448 intergenic not near genes chr3L 9134339 intergenic Dhpr + chr3L_8_9130001 chr3L_9130001 RAL-325 549 chr3L 9290046 9290075 chr3L 9290121 9290151 5 73 0.0 0.0 0.0 5.0 105 chr3L 9290046 intergenic not near genes chr3L 9290098 intergenic not near genes chr3L 9290151 intergenic not near genes chr3L_5_9290001 chr3L_9290001 RAL-325 550 chr3L 9533759 9533786 chr3L 9541316 9541343 412 4 7558 2.0 9.5 5.8 0.6 7584 chr3L 9533759 intergenic not near genes chr3L 9537551 intergenic not near genes chr3L 9541343 intergenic not near genes chr3L_4_9535001 chr3L_9535001 RAL-325 551 chr3L 9572299 9572336 chr3L 9572378 9572415 5 76 0.0 0.5 0.2 4.2 116 chr3L 9572299 intron CG42673 + chr3L 9572357 intron CG42673 + chr3L 9572415 intron CG42673 + chr3L_5_9570001 chr3L_9570001 RAL-325 552 chr3L 9575928 9575949 chr3L 9580988 9580995 jockey 5 5066 0.0 2.5 1.2 2.3 5067 chr3L 9575928 intron CG42673 + chr3L 9578462 intron CG42673 + chr3L 9580995 intron CG42673 + chr3L_5_9575001 chr3L_9575001 RAL-325 553 chr3L 9697777 9697804 chr3L 9697861 9697896 5 89 1.5 1.0 1.2 2.3 119 chr3L 9697777 intergenic not near genes chr3L 9697836 intergenic UbcD4 + chr3L 9697896 intergenic UbcD4 + chr3L_5_9695001 chr3L_9695001 RAL-325 554 chr3L 9715622 9715628 chr3L 9715674 9715703 5 68 1.5 2.0 1.8 1.8 81 chr3L 9715622 intron vsg + chr3L 9715662 intron vsg + chr3L 9715703 intron vsg + chr3L_5_9715001 chr3L_9715001 RAL-325 555 chr3L 9951203 9951227 chr3L 9951283 9951306 4 82 1.5 2.0 1.8 1.4 103 chr3L 9951203 intron CG34356 + chr3L 9951254 intron CG34356 + chr3L 9951306 intron CG34356 + chr3L_4_9950001 chr3L_9950001 RAL-325 556 chr3L 10043880 10043913 chr3L 10043962 10043986 13 79 1.0 2.5 1.8 4.6 106 chr3L 10043880 intron dpr6 + chr3L 10043933 intron dpr6 + chr3L 10043986 intron dpr6 + chr3L_13_10040001 chr3L_10040001 RAL-325 557 chr3L 10120279 10120304 chr3L 10120369 10120387 5 90 4.5 2.5 3.5 1.1 108 chr3L 10120279 intron dpr6 + chr3L 10120333 intron dpr6 + chr3L 10120387 intron dpr6 + chr3L_5_10120001 chr3L_10120001 RAL-325 558 chr3L 10198630 10198654 chr3L 10198705 10198730 8 77 2.0 1.5 1.8 2.9 100 chr3L 10198630 intron ect - chr3L 10198680 intron ect - chr3L 10198730 intron ect - chr3L_8_10195001 chr3L_10195001 RAL-325 559 chr3L 10269767 10269786 chr3L 10269850 10269869 4 84 3.0 1.5 2.2 1.2 102 chr3L 10269767 5` UTR CR45242 + chr3L 10269818 5` UTR CR45242 + chr3L 10269869 5` UTR CR45242 + chr3L_4_10265001 chr3L_10265001 RAL-325 560 chr3L 10308757 10308776 chr3L 10308834 10308851 5 76 1.5 2.0 1.8 1.8 94 chr3L 10308757 intergenic not near genes chr3L 10308804 intergenic not near genes chr3L 10308851 intergenic not near genes chr3L_5_10305001 chr3L_10305001 RAL-325 561 chr3L 10310353 10310382 chr3L 10310448 10310479 5 97 1.0 1.5 1.2 2.3 126 chr3L 10310353 intergenic not near genes chr3L 10310416 intergenic not near genes chr3L 10310479 intergenic not near genes chr3L_5_10310001 chr3L_10310001 RAL-325 562 chr3L 10621858 10621870 chr3L 10621945 10621956 4 86 0.5 3.0 1.8 1.4 98 chr3L 10621858 intergenic not near genes chr3L 10621907 intergenic not near genes chr3L 10621956 intergenic not near genes chr3L_4_10620001 chr3L_10620001 RAL-325 563 chr3L 10658082 10658209 chr3L 10658159 10658334 5 96 0.0 0.0 0.0 5.0 252 chr3L 10658082 intron CG32066 - chr3L 10658208 intron CG32066 - chr3L 10658334 intron CG32066 - chr3L_5_10655001 chr3L_10655001 RAL-325 564 chr3L 10762843 10762858 chr3L 10762927 10762927 4 79 3.0 1.0 2.0 1.3 84 chr3L 10762843 intergenic not near genes chr3L 10762885 intergenic not near genes chr3L 10762927 intergenic not near genes chr3L_4_10760001 chr3L_10760001 RAL-325 565 chr3L 11105296 11105327 chr3L 11107007 11107037 X-element 9 1709 3.5 2.0 2.8 2.4 1741 chr3L 11105296 intergenic not near genes chr3L 11106166 intergenic not near genes chr3L 11107037 exon CG32073 - chr3L_9_11105001 chr3L_11105001 RAL-325 566 chr3L 11135528 11135806 chr3L 11135758 11135891 6 108 0.0 0.0 0.0 6.0 363 chr3L 11135528 intergenic CG14143 + chr3L 11135710 intergenic CG14143 +,CG32082 + chr3L 11135891 intergenic CG32082 +,CG14143 + chr3L_6_11135001 chr3L_11135001 RAL-325 567 chr3L 11158183 11158407 chr3L 11158343 11158535 7 134 11.5 14.5 13.0 0.5 352 chr3L 11158183 exon CG32082 + chr3L 11158359 exon CG32082 + chr3L 11158535 exon CG32082 + chr3L_7_11155001 chr3L_11155001 RAL-325 568 chr3L 11158519 11158540 chr3L 11158634 11158647 12 114 11.5 17.5 14.5 0.8 128 chr3L 11158519 exon CG32082 + chr3L 11158583 intron CG32082 + chr3L 11158647 exon CG32082 + chr3L_12_11155001 chr3L_11155001 RAL-325 569 chr3L 11158542 11158786 chr3L 11158631 11158926 6 120 15.5 17.0 16.2 0.3 384 chr3L 11158542 exon CG32082 + chr3L 11158734 exon CG32082 + chr3L 11158926 exon CG32082 + chr3L_6_11155001 chr3L_11155001 RAL-325 570 chr3L 11158933 11158940 chr3L 11159296 11159304 4 364 11.5 14.0 12.8 0.3 371 chr3L 11158933 exon CG32082 + chr3L 11159118 intron CG32082 + chr3L 11159304 exon CG32082 + chr3L_4_11155001 chr3L_11155001 RAL-325 571 chr3L 11381587 11381606 chr3L 11381781 11381799 6 194 1.5 4.0 2.8 1.6 212 chr3L 11381587 intergenic not near genes chr3L 11381693 intergenic not near genes chr3L 11381799 intergenic not near genes chr3L_6_11380001 chr3L_11380001 RAL-325 572 chr3L 11435564 11435576 chr3L 11435733 11435739 6 167 3.5 2.0 2.8 1.6 175 chr3L 11435564 intergenic CR44548 +,CG6149 - chr3L 11435652 5` UTR CR44548 + chr3L 11435739 5` UTR CR44548 + chr3L_6_11435001 chr3L_11435001 RAL-325 573 chr3L 11560790 11560813 chr3L 11560868 11560890 4 78 2.5 2.5 2.5 1.1 100 chr3L 11560790 intron Mob2 - chr3L 11560840 intron Mob2 - chr3L 11560890 intron Mob2 - chr3L_4_11560001 chr3L_11560001 RAL-325 574 chr3L 11564798 11564813 chr3L 11572407 11572437 412 6 7618 4.0 2.5 3.2 1.4 7639 chr3L 11564798 exon CG33267 + chr3L 11568618 intron CG33267 + chr3L 11572437 exon CG33267 + chr3L_6_11565001 chr3L_11565001 RAL-325 575 chr3L 11587941 11587954 chr3L 11588015 11588030 5 74 0.5 7.0 3.8 1.0 89 chr3L 11587941 intergenic rt - chr3L 11587986 intergenic rt - chr3L 11588030 intergenic rt - chr3L_5_11585001 chr3L_11585001 RAL-325 576 chr3L 11588734 11588758 chr3L 11588890 11588914 4 153 1.0 4.0 2.5 1.1 180 chr3L 11588734 intergenic not near genes chr3L 11588824 intergenic not near genes chr3L 11588914 intergenic not near genes chr3L_4_11585001 chr3L_11585001 RAL-325 577 chr3L 11678103 11678123 chr3L 11678190 11678210 6 87 1.5 3.0 2.2 1.9 107 chr3L 11678103 intron CG32085 - chr3L 11678156 intron CG32085 - chr3L 11678210 intron CG32085 - chr3L_6_11675001 chr3L_11675001 RAL-325 578 chr3L 11723084 11723116 chr3L 11727879 11727911 Doc 5 4795 2.5 2.0 2.2 1.6 4827 chr3L 11723084 3` UTR Bmcp + chr3L 11725498 intron Bmcp + chr3L 11727911 3` UTR Bmcp + chr3L_5_11725001 chr3L_11725001 RAL-325 579 chr3L 11729676 11729705 chr3L 11729752 11729779 6 75 1.0 4.5 2.8 1.6 103 chr3L 11729676 exon CG32088 + chr3L 11729728 intron CG32088 + chr3L 11729779 exon CG32088 + chr3L_6_11725001 chr3L_11725001 RAL-325 580 chr3L 11838964 11838986 chr3L 11839045 11839073 4 86 0.0 1.5 0.8 2.2 109 chr3L 11838964 intergenic not near genes chr3L 11839018 intergenic not near genes chr3L 11839073 intergenic not near genes chr3L_4_11835001 chr3L_11835001 RAL-325 581 chr3L 11846397 11846416 chr3L 11846516 11846533 5 119 0.0 0.0 0.0 5.0 136 chr3L 11846397 intergenic not near genes chr3L 11846465 intergenic not near genes chr3L 11846533 intergenic not near genes chr3L_5_11845001 chr3L_11845001 RAL-325 582 chr3L 11849331 11849355 chr3L 11849431 11849454 5 98 2.0 1.0 1.5 2.0 123 chr3L 11849331 intergenic not near genes chr3L 11849392 intergenic not near genes chr3L 11849454 intergenic not near genes chr3L_5_11845001 chr3L_11845001 RAL-325 583 chr3L 11864563 11864585 chr3L 11865857 11865880 pogo 4 1295 1.0 3.5 2.2 1.2 1317 chr3L 11864563 intron CG44837 - chr3L 11865222 intron CG44837 - chr3L 11865880 intron CG44837 - chr3L_4_11865001 chr3L_11865001 RAL-325 584 chr3L 12052710 12052735 chr3L 12052797 12052823 4 85 1.5 1.5 1.5 1.6 113 chr3L 12052710 intron rols - chr3L 12052766 intron rols - chr3L 12052823 intron rols - chr3L_4_12050001 chr3L_12050001 RAL-325 585 chr3L 12223871 12223904 chr3L 12223948 12223981 5 76 0.0 1.0 0.5 3.3 110 chr3L 12223871 intron app - chr3L 12223926 intron app - chr3L 12223981 intron app - chr3L_5_12220001 chr3L_12220001 RAL-325 586 chr3L 12476289 12476323 chr3L 12476365 12476397 5 75 1.0 5.0 3.0 1.2 108 chr3L 12476289 intron CG10663 - chr3L 12476343 intron CG10663 - chr3L 12476397 intron CG10663 - chr3L_5_12475001 chr3L_12475001 RAL-325 587 chr3L 12610996 12611023 chr3L 12611241 12611267 5 245 3.0 2.0 2.5 1.4 271 chr3L 12610996 intron caup + chr3L 12611132 intron caup + chr3L 12611267 intron caup + chr3L_5_12610001 chr3L_12610001 RAL-325 588 chr3L 12706651 12706656 chr3L 12706778 12706782 4 127 2.0 3.5 2.8 1.1 131 chr3L 12706651 intron mirr + chr3L 12706716 intron mirr + chr3L 12706782 intron mirr + chr3L_4_12705001 chr3L_12705001 RAL-325 589 chr3L 12777509 12777534 chr3L 12777588 12777614 4 80 0.5 0.0 0.2 3.3 105 chr3L 12777509 exon CG32106 - chr3L 12777562 exon CG32106 - chr3L 12777614 exon CG32106 - chr3L_4_12775001 chr3L_12775001 RAL-325 590 chr3L 12788419 12788428 chr3L 12788539 12788548 5 120 1.5 1.0 1.2 2.3 129 chr3L 12788419 intron Atg1 - chr3L 12788484 intron Atg1 - chr3L 12788548 exon Atg1 - chr3L_5_12785001 chr3L_12785001 RAL-325 591 chr3L 12863919 12863923 chr3L 12864008 12864015 4 90 2.0 2.5 2.2 1.2 96 chr3L 12863919 intergenic not near genes chr3L 12863967 intergenic not near genes chr3L 12864015 intergenic not near genes chr3L_4_12860001 chr3L_12860001 RAL-325 592 chr3L 12874925 12874963 chr3L 12877217 12877255 jockey 11 2291 0.5 0.5 0.5 7.3 2330 chr3L 12874925 intergenic not near genes chr3L 12876090 intergenic not near genes chr3L 12877255 intergenic not near genes chr3L_11_12875001 chr3L_12875001 RAL-325 593 chr3L 12894802 12894822 chr3L 12894879 12894900 9 77 4.5 6.0 5.2 1.5 98 chr3L 12894802 intergenic CG14118 + chr3L 12894851 intergenic CG14118 + chr3L 12894900 intergenic CG14118 + chr3L_9_12890001 chr3L_12890001 RAL-325 594 chr3L 12900656 12900669 chr3L 12900955 12900965 4 295 0.5 1.0 0.8 2.2 309 chr3L 12900656 intergenic not near genes chr3L 12900810 intergenic CG12520 - chr3L 12900965 intergenic CG12520 - chr3L_4_12900001 chr3L_12900001 RAL-325 595 chr3L 12998578 12998597 chr3L 12998797 12998806 4 217 2.0 3.5 2.8 1.1 228 chr3L 12998578 intergenic not near genes chr3L 12998692 intergenic not near genes chr3L 12998806 intergenic not near genes chr3L_4_12995001 chr3L_12995001 RAL-325 596 chr3L 13007695 13007726 chr3L 13007772 13007772 4 70 0.0 1.5 0.8 2.2 77 chr3L 13007695 exon CG11263 + chr3L 13007734 3` UTR CG11263 + chr3L 13007772 3` UTR CG11263 + chr3L_4_13005001 chr3L_13005001 RAL-325 597 chr3L 13069574 13069588 chr3L 13069652 13069663 6 78 1.0 2.0 1.5 2.4 89 chr3L 13069574 intergenic not near genes chr3L 13069618 intergenic not near genes chr3L 13069663 intergenic not near genes chr3L_6_13065001 chr3L_13065001 RAL-325 598 chr3L 13257255 13257283 chr3L 13257338 13257363 4 82 1.5 0.5 1.0 2.0 108 chr3L 13257255 intron caps + chr3L 13257309 intron caps + chr3L 13257363 intron caps + chr3L_4_13255001 chr3L_13255001 RAL-325 599 chr3L 13261822 13261831 chr3L 13261911 13261920 4 89 0.5 0.5 0.5 2.7 98 chr3L 13261822 intron caps + chr3L 13261871 intron caps + chr3L 13261920 intron caps + chr3L_4_13260001 chr3L_13260001 RAL-325 600 chr3L 13267285 13267309 chr3L 13267398 13267408 8 110 5.0 1.5 3.2 1.9 123 chr3L 13267285 intron caps + chr3L 13267346 intron caps + chr3L 13267408 intron caps + chr3L_8_13265001 chr3L_13265001 RAL-325 601 chr3L 13455750 13455771 chr3L 13455904 13455916 7 152 2.0 3.0 2.5 2.0 166 chr3L 13455750 intron CG10738 + chr3L 13455833 intron CG10738 + chr3L 13455916 intron CG10738 + chr3L_7_13455001 chr3L_13455001 RAL-325 602 chr3L 13582733 13582736 chr3L 13582816 13582818 4 82 2.0 6.5 4.2 0.8 85 chr3L 13582733 intron bru-3 - chr3L 13582776 intron bru-3 - chr3L 13582818 intron bru-3 - chr3L_4_13580001 chr3L_13580001 RAL-325 603 chr3L 13626628 13626648 chr3L 13626703 13626731 8 79 1.5 1.5 1.5 3.2 103 chr3L 13626628 intron bru-3 - chr3L 13626680 intron bru-3 - chr3L 13626731 intron bru-3 - chr3L_8_13625001 chr3L_13625001 RAL-325 604 chr3L 13698137 13698165 chr3L 13698229 13698254 6 92 0.5 0.5 0.5 4.0 117 chr3L 13698137 intron bru-3 - chr3L 13698196 intron bru-3 - chr3L 13698254 intron bru-3 - chr3L_6_13695001 chr3L_13695001 RAL-325 605 chr3L 13804545 13804571 chr3L 13822831 13822847 roo 6 18284 2.5 3.5 3.0 1.5 18302 chr3L 13804545 intergenic not near genes chr3L 13813696 intergenic not near genes chr3L 13822847 intergenic not near genes chr3L_6_13810001 chr3L_13810001 RAL-325 606 chr3L 14295997 14296014 chr3L 14296478 14296499 roo 8 478 2.5 3.5 3.0 2.0 502 chr3L 14295997 intron fz + chr3L 14296248 intron fz + chr3L 14296499 intron fz + chr3L_8_14295001 chr3L_14295001 RAL-325 607 chr3L 14312023 14312039 chr3L 14316833 14316838 X-element 4 4809 2.0 1.0 1.5 1.6 4815 chr3L 14312023 exon fz + chr3L 14314430 intron fz + chr3L 14316838 intron fz + chr3L_4_14310001 chr3L_14310001 RAL-325 608 chr3L 14417551 14417577 chr3L 14417642 14417661 5 88 1.5 0.5 1.0 2.5 110 chr3L 14417551 intron bbg - chr3L 14417606 intron bbg - chr3L 14417661 intron bbg - chr3L_5_14415001 chr3L_14415001 RAL-325 609 chr3L 14486023 14486038 chr3L 14486103 14486117 4 80 1.0 0.5 0.8 2.2 94 chr3L 14486023 intron bbg - chr3L 14486070 intron bbg - chr3L 14486117 intron bbg - chr3L_4_14485001 chr3L_14485001 RAL-325 610 chr3L 14565753 14565778 chr3L 14565843 14565869 4 89 1.0 2.0 1.5 1.6 116 chr3L 14565753 intergenic not near genes chr3L 14565811 intergenic not near genes chr3L 14565869 intergenic not near genes chr3L_4_14565001 chr3L_14565001 RAL-325 611 chr3L 14636727 14636752 chr3L 14636816 14636843 6 89 0.0 1.0 0.5 4.0 116 chr3L 14636727 intron dlp + chr3L 14636785 intron dlp + chr3L 14636843 intron dlp + chr3L_6_14635001 chr3L_14635001 RAL-325 612 chr3L 14840374 14840392 chr3L 14840467 14840497 4 102 0.5 2.0 1.2 1.8 123 chr3L 14840374 intron CG17839 + chr3L 14840436 intron CG17839 + chr3L 14840497 intron CG17839 + chr3L_4_14840001 chr3L_14840001 RAL-325 613 chr3L 14870048 14870080 chr3L 14870123 14870156 14 76 2.0 3.0 2.5 4.0 108 chr3L 14870048 intron CG17839 + chr3L 14870102 intron CG17839 + chr3L 14870156 intron CG17839 + chr3L_14_14870001 chr3L_14870001 RAL-325 614 chr3L 15085062 15085084 chr3L 15086214 15086250 1360 5 1161 1.5 2.0 1.8 1.8 1188 chr3L 15085062 intron cp309 - chr3L 15085656 intron cp309 - chr3L 15086250 intron cp309 - chr3L_5_15085001 chr3L_15085001 RAL-325 615 chr3L 15132557 15132590 chr3L 15132649 15132670 10 85 2.0 3.0 2.5 2.9 113 chr3L 15132557 exon CG12316 - chr3L 15132614 exon CG12316 - chr3L 15132670 exon CG12316 - chr3L_10_15130001 chr3L_15130001 RAL-325 616 chr3L 15929213 15929224 chr3L 15938350 15938371 roo 4 9142 1.0 1.0 1.0 2.0 9158 chr3L 15929213 intron Pka-C3 - chr3L 15933792 intron Pka-C3 - chr3L 15938371 intron Pka-C3 - chr3L_4_15930001 chr3L_15930001 RAL-325 617 chr3L 15944585 15944611 chr3L 15944660 15944687 5 72 2.0 0.5 1.2 2.3 102 chr3L 15944585 intron Pka-C3 - chr3L 15944636 intron Pka-C3 - chr3L 15944687 intron Pka-C3 - chr3L_5_15940001 chr3L_15940001 RAL-325 618 chr3L 16184104 16184133 chr3L 16188923 16188943 X-element 7 4816 1.0 1.5 1.2 3.2 4839 chr3L 16184104 intergenic not near genes chr3L 16186524 intergenic not near genes chr3L 16188943 intergenic not near genes chr3L_7_16185001 chr3L_16185001 RAL-325 619 chr3L 16310568 16310585 chr3L 16311102 16311119 5 532 2.0 2.0 2.0 1.7 551 chr3L 16310568 5` UTR CR32160 + chr3L 16310844 5` UTR CR32160 + chr3L 16311119 5` UTR CR32160 + chr3L_5_16310001 chr3L_16310001 RAL-325 620 chr3L 16450020 16450053 chr3L 16450105 16450138 6 84 1.0 3.0 2.0 2.0 118 chr3L 16450020 intron,intron CG33158 +,dsx-c73A - chr3L 16450079 intron,intron CG33158 +,dsx-c73A - chr3L 16450138 intron,intron CG33158 +,dsx-c73A - chr3L_6_16450001 chr3L_16450001 RAL-325 621 chr3L 16457538 16457558 chr3L 16457633 16457653 4 94 0.0 1.5 0.8 2.2 115 chr3L 16457538 intron CG33158 + chr3L 16457596 intron CG33158 + chr3L 16457653 intron CG33158 + chr3L_4_16455001 chr3L_16455001 RAL-325 622 chr3L 16493974 16494013 chr3L 16494490 16494494 jockey 16 512 2.5 4.5 3.5 3.6 520 chr3L 16493974 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494234 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494494 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_16_16490001 chr3L_16490001 RAL-325 623 chr3L 16540054 16540081 chr3L 16540141 16540169 5 88 1.5 1.0 1.2 2.3 115 chr3L 16540054 intron CG43373 - chr3L 16540112 intron CG43373 - chr3L 16540169 intron CG43373 - chr3L_5_16540001 chr3L_16540001 RAL-325 624 chr3L 16616509 16616539 chr3L 16621836 16621866 297 5 5327 1.0 1.5 1.2 2.3 5357 chr3L 16616509 3` UTR Abl - chr3L 16619188 3` UTR Abl - chr3L 16621866 3` UTR Abl - chr3L_5_16615001 chr3L_16615001 RAL-325 625 chr3L 16653117 16653145 chr3L 16653200 16653228 9 81 1.5 3.0 2.2 2.8 111 chr3L 16653117 intron Baldspot - chr3L 16653172 intron Baldspot - chr3L 16653228 intron Baldspot - chr3L_9_16650001 chr3L_16650001 RAL-325 626 chr3L 16743950 16743966 chr3L 16744063 16744080 7 113 3.5 0.5 2.0 2.3 130 chr3L 16743950 intergenic not near genes chr3L 16744015 intergenic not near genes chr3L 16744080 intergenic not near genes chr3L_7_16740001 chr3L_16740001 RAL-325 627 chr3L 16760854 16760866 chr3L 16760991 16761004 5 137 0.0 0.5 0.2 4.2 150 chr3L 16760854 intergenic not near genes chr3L 16760929 intergenic not near genes chr3L 16761004 intergenic not near genes chr3L_5_16760001 chr3L_16760001 RAL-325 628 chr3L 16817876 16817904 chr3L 16818016 16818032 6 136 4.5 1.5 3.0 1.5 156 chr3L 16817876 intron,intron nudC +,CG13024 - chr3L 16817954 intron,intron nudC +,CG13024 - chr3L 16818032 intron,intron nudC +,CG13024 - chr3L_6_16815001 chr3L_16815001 RAL-325 629 chr3L 16867547 16867552 chr3L 16867624 16867629 4 77 1.5 2.5 2.0 1.3 82 chr3L 16867547 intron Lmpt + chr3L 16867588 intron Lmpt + chr3L 16867629 intron Lmpt + chr3L_4_16865001 chr3L_16865001 RAL-325 630 chr3L 16869582 16869597 chr3L 16869664 16869680 4 82 2.5 1.0 1.8 1.4 98 chr3L 16869582 intron Lmpt + chr3L 16869631 intron Lmpt + chr3L 16869680 intron Lmpt + chr3L_4_16865001 chr3L_16865001 RAL-325 631 chr3L 16870870 16870891 chr3L 16870960 16870981 4 90 1.5 2.5 2.0 1.3 111 chr3L 16870870 intron Lmpt + chr3L 16870926 intron Lmpt + chr3L 16870981 intron Lmpt + chr3L_4_16870001 chr3L_16870001 RAL-325 632 chr3L 16978793 16978808 chr3L 16979113 16979129 4 320 1.5 2.0 1.8 1.4 336 chr3L 16978793 intron Exn + chr3L 16978961 intron Exn + chr3L 16979129 intron Exn + chr3L_4_16975001 chr3L_16975001 RAL-325 633 chr3L 17004396 17004428 chr3L 17004516 17004549 11 118 2.5 3.5 3.0 2.8 153 chr3L 17004396 intron CG3764 - chr3L 17004472 intron CG3764 - chr3L 17004549 intron CG3764 - chr3L_11_17000001 chr3L_17000001 RAL-325 634 chr3L 17034937 17034966 chr3L 17035121 17035154 G2 6 185 1.5 3.0 2.2 1.9 217 chr3L 17034937 intergenic not near genes chr3L 17035046 intergenic not near genes chr3L 17035154 intergenic not near genes chr3L_6_17035001 chr3L_17035001 RAL-325 635 chr3L 17085014 17085023 chr3L 17094162 17094171 roo 4 9148 5.0 4.0 4.5 0.7 9157 chr3L 17085014 intron Rbp6 - chr3L 17089592 intron Rbp6 - chr3L 17094171 intron Rbp6 - chr3L_4_17085001 chr3L_17085001 RAL-325 636 chr3L 17110331 17110342 chr3L 17110397 17110421 10 78 3.5 5.5 4.5 1.8 90 chr3L 17110331 intron Rbp6 - chr3L 17110376 intron Rbp6 - chr3L 17110421 intron Rbp6 - chr3L_10_17110001 chr3L_17110001 RAL-325 637 chr3L 17120653 17120942 chr3L 17120729 17120995 12 72 1.5 1.0 1.2 5.5 342 chr3L 17120653 intron Rbp6 - chr3L 17120824 intron Rbp6 - chr3L 17120995 intron Rbp6 - chr3L_12_17120001 chr3L_17120001 RAL-325 638 chr3L 17126015 17126046 chr3L 17126229 17126257 5 210 1.0 1.0 1.0 2.5 242 chr3L 17126015 intron Rbp6 - chr3L 17126136 intron Rbp6 - chr3L 17126257 intron Rbp6 - chr3L_5_17125001 chr3L_17125001 RAL-325 639 chr3L 17146965 17146987 chr3L 17147047 17147069 4 80 2.5 4.0 3.2 1.0 104 chr3L 17146965 intron Rbp6 - chr3L 17147017 intron Rbp6 - chr3L 17147069 intron Rbp6 - chr3L_4_17145001 chr3L_17145001 RAL-325 640 chr3L 17149170 17149187 chr3L 17149251 17149256 5 78 4.0 0.0 2.0 1.7 86 chr3L 17149170 intron Rbp6 - chr3L 17149213 intron Rbp6 - chr3L 17149256 intron Rbp6 - chr3L_5_17145001 chr3L_17145001 RAL-325 641 chr3L 17217255 17217283 chr3L 17217334 17217363 7 79 0.5 2.0 1.2 3.2 108 chr3L 17217255 intron Rbp6 - chr3L 17217309 intron Rbp6 - chr3L 17217363 intron Rbp6 - chr3L_7_17215001 chr3L_17215001 RAL-325 642 chr3L 17367437 17367459 chr3L 17367531 17367534 10 92 3.0 5.5 4.2 1.9 97 chr3L 17367437 intergenic CR45688 +,Cad74A - chr3L 17367486 intergenic CR45688 +,Cad74A - chr3L 17367534 intergenic CR45688 +,Cad74A - chr3L_10_17365001 chr3L_17365001 RAL-325 643 chr3L 17510749 17510760 chr3L 17510833 17510842 6 83 2.0 7.5 4.8 1.0 93 chr3L 17510749 exon Oatp74D + chr3L 17510796 intron Oatp74D + chr3L 17510842 intron Oatp74D + chr3L_6_17510001 chr3L_17510001 RAL-325 644 chr3L 17516985 17517004 chr3L 17524541 17524560 412 4 7556 1.5 1.5 1.5 1.6 7575 chr3L 17516985 intron CG7564 + chr3L 17520772 intron CG7564 + chr3L 17524560 3` UTR CG7564 + chr3L_4_17520001 chr3L_17520001 RAL-325 645 chr3L 17517005 17517013 chr3L 17524536 17524571 412 5 7548 0.5 1.0 0.8 2.8 7566 chr3L 17517005 intron CG7564 + chr3L 17520788 intron CG7564 + chr3L 17524571 3` UTR CG7564 + chr3L_5_17520001 chr3L_17520001 RAL-325 646 chr3L 17743435 17743447 chr3L 17743504 17743530 4 74 1.5 5.5 3.5 0.9 95 chr3L 17743435 intron Ccn + chr3L 17743482 intron Ccn + chr3L 17743530 intron Ccn + chr3L_4_17740001 chr3L_17740001 RAL-325 647 chr3L 17790203 17790461 chr3L 17790305 17790597 14 109 2.5 2.5 2.5 4.0 394 chr3L 17790203 intergenic not near genes chr3L 17790400 intergenic not near genes chr3L 17790597 intergenic CG42815 - chr3L_14_17790001 chr3L_17790001 RAL-325 648 chr3L 17799809 17799837 chr3L 17801596 17801624 S-element 11 1787 1.5 1.0 1.2 5.0 1815 chr3L 17799809 intron NUCB1 - chr3L 17800716 intron NUCB1 - chr3L 17801624 intron NUCB1 - chr3L_11_17800001 chr3L_17800001 RAL-325 649 chr3L 17837630 17837656 chr3L 17837717 17837743 10 85 6.5 4.5 5.5 1.5 113 chr3L 17837630 exon Grd + chr3L 17837686 intron Grd + chr3L 17837743 exon Grd + chr3L_10_17835001 chr3L_17835001 RAL-325 650 chr3L 17902300 17902330 chr3L 17902378 17902407 4 76 0.0 0.0 0.0 4.0 107 chr3L 17902300 intron Prestin - chr3L 17902354 intron Prestin - chr3L 17902407 intron Prestin - chr3L_4_17900001 chr3L_17900001 RAL-325 651 chr3L 17923029 17923053 chr3L 17923129 17923152 9 97 0.5 5.0 2.8 2.4 123 chr3L 17923029 intergenic not near genes chr3L 17923090 intergenic not near genes chr3L 17923152 intergenic not near genes chr3L_9_17920001 chr3L_17920001 RAL-325 652 chr3L 17957062 17957084 chr3L 17957142 17957173 11 86 2.5 2.0 2.2 3.4 111 chr3L 17957062 intron Eip75B - chr3L 17957118 intron Eip75B - chr3L 17957173 intron Eip75B - chr3L_11_17955001 chr3L_17955001 RAL-325 653 chr3L 18020563 18020578 chr3L 18020669 18020684 4 104 1.5 1.0 1.2 1.8 121 chr3L 18020563 intron Eip75B - chr3L 18020624 intron Eip75B - chr3L 18020684 intron Eip75B - chr3L_4_18020001 chr3L_18020001 RAL-325 654 chr3L 18546701 18546731 chr3L 18546795 18546825 8 94 0.5 3.5 2.0 2.7 124 chr3L 18546701 intergenic not near genes chr3L 18546763 intergenic not near genes chr3L 18546825 intergenic not near genes chr3L_8_18545001 chr3L_18545001 RAL-325 655 chr3L 18593957 18593981 chr3L 18595937 18595960 Doc 6 1980 0.0 0.0 0.0 6.0 2003 chr3L 18593957 intergenic term - chr3L 18594958 intergenic not near genes chr3L 18595960 intergenic CR45389 + chr3L_6_18590001 chr3L_18590001 RAL-325 656 chr3L 18656182 18656219 chr3L 18656267 18656299 9 82 3.0 1.5 2.2 2.8 117 chr3L 18656182 intron MYPT-75D + chr3L 18656240 intron MYPT-75D + chr3L 18656299 intron MYPT-75D + chr3L_9_18655001 chr3L_18655001 RAL-325 657 chr3L 18688948 18688961 chr3L 18689049 18689063 4 101 4.5 2.5 3.5 0.9 115 chr3L 18688948 intergenic not near genes chr3L 18689006 intergenic not near genes chr3L 18689063 intergenic not near genes chr3L_4_18685001 chr3L_18685001 RAL-325 658 chr3L 18772409 18772431 chr3L 18781090 18781112 roo 5 8680 2.0 0.0 1.0 2.5 8703 chr3L 18772409 intron ftz-f1 - chr3L 18776760 intron ftz-f1 - chr3L 18781112 intron ftz-f1 - chr3L_5_18775001 chr3L_18775001 RAL-325 659 chr3L 18941183 18941205 chr3L 18941292 18941303 4 107 1.5 2.5 2.0 1.3 120 chr3L 18941183 intron CG32204 - chr3L 18941243 intron CG32204 - chr3L 18941303 intron CG32204 - chr3L_4_18940001 chr3L_18940001 RAL-325 660 chr3L 19091165 19091195 chr3L 19091260 19091292 10 97 2.0 3.5 2.8 2.6 127 chr3L 19091165 intergenic CR45386 + chr3L 19091228 intergenic CR45386 + chr3L 19091292 intergenic CR45386 + chr3L_10_19090001 chr3L_19090001 RAL-325 661 chr3L 19117053 19117072 chr3L 19124500 19124503 mdg1 6 7444 2.5 4.5 3.5 1.3 7450 chr3L 19117053 intron CG14082 - chr3L 19120778 intron CG14082 - chr3L 19124503 intron CG14082 - chr3L_6_19120001 chr3L_19120001 RAL-325 662 chr3L 19117073 19117075 chr3L 19124493 19124522 mdg1 4 7440 2.5 4.5 3.5 0.9 7449 chr3L 19117073 intron CG14082 - chr3L 19120798 intron CG14082 - chr3L 19124522 intron CG14082 - chr3L_4_19120001 chr3L_19120001 RAL-325 663 chr3L 19282269 19282296 chr3L 19282365 19282388 9 94 2.0 2.0 2.0 3.0 119 chr3L 19282269 3` UTR Gbs-76A - chr3L 19282328 3` UTR Gbs-76A - chr3L 19282388 3` UTR Gbs-76A - chr3L_9_19280001 chr3L_19280001 RAL-325 664 chr3L 19391383 19391420 chr3L 19391466 19391503 4 82 1.0 1.0 1.0 2.0 120 chr3L 19391383 intron CG32206 - chr3L 19391443 intron CG32206 - chr3L 19391503 intron CG32206 - chr3L_4_19390001 chr3L_19390001 RAL-325 665 chr3L 19473110 19473129 chr3L 19473362 19473385 6 254 10.5 2.5 6.5 0.8 275 chr3L 19473110 3` UTR CG12519 + chr3L 19473248 intergenic CG12519 + chr3L 19473385 intergenic CG12519 + chr3L_6_19470001 chr3L_19470001 RAL-325 666 chr3L 19523400 19523424 chr3L 19523540 19523564 6 136 0.0 4.0 2.0 2.0 164 chr3L 19523400 intron Cpr76Bc + chr3L 19523482 intron Cpr76Bc + chr3L 19523564 intron Cpr76Bc + chr3L_6_19520001 chr3L_19520001 RAL-325 667 chr3L 19535683 19535699 chr3L 19535830 19535852 7 153 5.5 4.0 4.8 1.2 169 chr3L 19535683 exon Cpr76Bd + chr3L 19535768 exon Cpr76Bd + chr3L 19535852 exon Cpr76Bd + chr3L_7_19535001 chr3L_19535001 RAL-325 668 chr3L 19820305 19820319 chr3L 19827854 19827867 412 4 7549 2.5 2.0 2.2 1.2 7562 chr3L 19820305 intron Deaf1 + chr3L 19824086 intron Deaf1 + chr3L 19827867 intron Deaf1 + chr3L_4_19820001 chr3L_19820001 RAL-325 669 chr3L 19981219 19981230 chr3L 19981299 19981310 4 80 1.0 1.5 1.2 1.8 91 chr3L 19981219 intergenic CG17732 + chr3L 19981264 intergenic CG17732 + chr3L 19981310 intergenic CG17732 + chr3L_4_19980001 chr3L_19980001 RAL-325 670 chr3L 20031073 20031105 chr3L 20031154 20031186 8 78 2.0 2.0 2.0 2.7 113 chr3L 20031073 intergenic not near genes chr3L 20031130 intergenic not near genes chr3L 20031186 intergenic not near genes chr3L_8_20030001 chr3L_20030001 RAL-325 671 chr3L 20042578 20042600 chr3L 20042732 20042754 5 154 1.0 2.0 1.5 2.0 176 chr3L 20042578 intergenic not near genes chr3L 20042666 intergenic not near genes chr3L 20042754 intergenic not near genes chr3L_5_20040001 chr3L_20040001 RAL-325 672 chr3L 20051220 20051240 chr3L 20051298 20051324 4 79 2.0 2.0 2.0 1.3 104 chr3L 20051220 intergenic not near genes chr3L 20051272 intergenic not near genes chr3L 20051324 intergenic not near genes chr3L_4_20050001 chr3L_20050001 RAL-325 673 chr3L 20113478 20113511 chr3L 20113571 20113605 7 93 1.5 2.5 2.0 2.3 127 chr3L 20113478 intergenic not near genes chr3L 20113542 intergenic not near genes chr3L 20113605 intergenic not near genes chr3L_7_20110001 chr3L_20110001 RAL-325 674 chr3L 20113662 20113687 chr3L 20122916 20122940 roo 5 9255 1.5 2.0 1.8 1.8 9278 chr3L 20113662 intergenic not near genes chr3L 20118301 intergenic not near genes chr3L 20122940 intergenic not near genes chr3L_5_20115001 chr3L_20115001 RAL-325 675 chr3L 20143081 20143099 chr3L 20143161 20143177 5 79 1.5 1.0 1.2 2.3 96 chr3L 20143081 intergenic not near genes chr3L 20143129 intergenic not near genes chr3L 20143177 intergenic not near genes chr3L_5_20140001 chr3L_20140001 RAL-325 676 chr3L 20257337 20257363 chr3L 20258457 20258482 pogo 11 1115 0.0 0.5 0.2 9.2 1145 chr3L 20257337 intron rdgC + chr3L 20257910 intron rdgC + chr3L 20258482 intron rdgC + chr3L_11_20255001 chr3L_20255001 RAL-325 677 chr3L 20386938 20386972 chr3L 20387040 20387074 14 102 2.5 1.5 2.0 4.7 136 chr3L 20386938 intron fbl + chr3L 20387006 intron fbl + chr3L 20387074 intron fbl + chr3L_14_20385001 chr3L_20385001 RAL-325 678 chr3L 20590071 20590086 chr3L 20590603 20590616 412 4 532 1.5 3.0 2.2 1.2 545 chr3L 20590071 intergenic not near genes chr3L 20590344 intergenic not near genes chr3L 20590616 intergenic not near genes chr3L_4_20590001 chr3L_20590001 RAL-325 679 chr3L 20781389 20781399 chr3L 20781471 20781485 7 85 5.0 2.0 3.5 1.6 96 chr3L 20781389 3` UTR CG11399 - chr3L 20781437 3` UTR CG11399 - chr3L 20781485 3` UTR CG11399 - chr3L_7_20780001 chr3L_20780001 RAL-325 680 chr3L 20781404 20781412 chr3L 20781469 20781497 6 82 2.5 2.0 2.2 1.9 93 chr3L 20781404 3` UTR CG11399 - chr3L 20781450 3` UTR CG11399 - chr3L 20781497 3` UTR CG11399 - chr3L_6_20780001 chr3L_20780001 RAL-325 681 chr3L 20883771 20883794 chr3L 20883898 20883907 4 123 2.0 2.0 2.0 1.3 136 chr3L 20883771 intron CG32432 - chr3L 20883839 intron CG32432 - chr3L 20883907 intron CG32432 - chr3L_4_20880001 chr3L_20880001 RAL-325 682 chr3L 21082210 21082231 chr3L 21082287 21082309 5 77 2.0 1.5 1.8 1.8 99 chr3L 21082210 intron ko - chr3L 21082260 intron ko - chr3L 21082309 intron ko - chr3L_5_21080001 chr3L_21080001 RAL-325 683 chr3L 21151862 21151896 chr3L 21156946 21156980 flea 6 5084 2.5 1.0 1.8 2.1 5118 chr3L 21151862 intron Ac78C - chr3L 21154421 intron Ac78C - chr3L 21156980 intron Ac78C - chr3L_6_21150001 chr3L_21150001 RAL-325 684 chr3L 21232458 21232489 chr3L 21232579 21232591 10 116 2.0 2.0 2.0 3.3 133 chr3L 21232458 intron Eip78C + chr3L 21232524 intron Eip78C + chr3L 21232591 intron Eip78C + chr3L_10_21230001 chr3L_21230001 RAL-325 685 chr3L 21306163 21306177 chr3L 21315305 21315336 roo 5 9155 2.5 2.0 2.2 1.6 9173 chr3L 21306163 3` UTR,3` UTR CG7632 +,Pc - chr3L 21310750 intron Pc - chr3L 21315336 3` UTR Pc - chr3L_5_21310001 chr3L_21310001 RAL-325 686 chr3L 21406998 21407026 chr3L 21407077 21407104 9 77 2.0 2.5 2.2 2.8 106 chr3L 21406998 intron rgn + chr3L 21407051 intron rgn + chr3L 21407104 intron rgn + chr3L_9_21405001 chr3L_21405001 RAL-325 687 chr3L 21427848 21427881 chr3L 21427940 21427974 10 92 1.0 4.5 2.8 2.6 126 chr3L 21427848 intron,5` UTR barc -,CG33288 + chr3L 21427911 intron,5` UTR barc -,CG33288 + chr3L 21427974 intron,5` UTR barc -,CG33288 + chr3L_10_21425001 chr3L_21425001 RAL-325 688 chr3L 21656993 21657023 chr3L 21657086 21657114 7 89 0.0 2.5 1.2 3.2 121 chr3L 21656993 intron CG43980 + chr3L 21657054 intron CG43980 + chr3L 21657114 intron CG43980 + chr3L_7_21655001 chr3L_21655001 RAL-325 689 chr3L 21742508 21742536 chr3L 21742611 21742634 11 95 2.0 3.5 2.8 2.9 126 chr3L 21742508 intergenic CG14572 + chr3L 21742571 intergenic CG14572 + chr3L 21742634 intergenic CG14572 + chr3L_11_21740001 chr3L_21740001 RAL-325 690 chr3L 21799937 21799969 chr3L 21800022 21800053 12 84 3.0 3.0 3.0 3.0 116 chr3L 21799937 intergenic not near genes chr3L 21799995 intergenic not near genes chr3L 21800053 intergenic not near genes chr3L_12_21795001 chr3L_21795001 RAL-325 691 chr3L 22099676 22099709 chr3L 22105861 22105895 3S18 10 6184 2.0 0.0 1.0 5.0 6219 chr3L 22099676 intergenic not near genes chr3L 22102786 intergenic not near genes chr3L 22105895 intergenic not near genes chr3L_10_22100001 chr3L_22100001 RAL-325 692 chr3L 22130506 22130513 chr3L 22130652 22130659 4 146 2.5 4.5 3.5 0.9 153 chr3L 22130506 intergenic not near genes chr3L 22130582 intergenic not near genes chr3L 22130659 intergenic not near genes chr3L_4_22130001 chr3L_22130001 RAL-325 693 chr3L 22137658 22137674 chr3L 22137743 22137760 7 84 2.0 0.0 1.0 3.5 102 chr3L 22137658 intron olf413 + chr3L 22137709 intron olf413 + chr3L 22137760 intron olf413 + chr3L_7_22135001 chr3L_22135001 RAL-325 694 chr3L 22447201 22447234 chr3L 22447292 22447325 14 91 1.0 5.5 3.2 3.3 124 chr3L 22447201 intergenic not near genes chr3L 22447263 intergenic not near genes chr3L 22447325 intergenic not near genes chr3L_14_22445001 chr3L_22445001 RAL-325 695 chr3L 22507123 22507155 chr3L 22507209 22507236 5 80 5.0 6.0 5.5 0.8 113 chr3L 22507123 intergenic not near genes chr3L 22507180 intergenic not near genes chr3L 22507236 intergenic not near genes chr3L_5_22505001 chr3L_22505001 RAL-325 696 chr3L 22555778 22555801 chr3L 22563246 22563269 blood 4 7466 0.5 0.0 0.2 3.3 7491 chr3L 22555778 intergenic not near genes chr3L 22559524 intergenic not near genes chr3L 22563269 intergenic not near genes chr3L_4_22555001 chr3L_22555001 RAL-325 697 chr3L 22570429 22570457 chr3L 22570573 22570600 8 143 1.0 1.5 1.2 3.6 171 chr3L 22570429 intergenic not near genes chr3L 22570514 intergenic not near genes chr3L 22570600 intergenic not near genes chr3L_8_22570001 chr3L_22570001 RAL-325 698 chr3L 22577619 22577644 chr3L 22582406 22582419 Doc 9 4783 3.0 2.5 2.8 2.4 4800 chr3L 22577619 intergenic not near genes chr3L 22580019 intergenic not near genes chr3L 22582419 3` UTR CG14459 - chr3L_9_22580001 chr3L_22580001 RAL-325 699 chr3L 22617192 22617222 chr3L 22624643 22624671 blood 10 7450 3.5 3.0 3.2 2.4 7479 chr3L 22617192 intron CG14459 - chr3L 22620932 intron CG14459 - chr3L 22624671 intron CG14459 - chr3L_10_22620001 chr3L_22620001 RAL-325 700 chr3L 22674431 22674460 chr3L 22674509 22674536 8 76 2.5 1.0 1.8 2.9 105 chr3L 22674431 intron CG14457 + chr3L 22674484 intron CG14457 + chr3L 22674536 intron CG14457 + chr3L_8_22670001 chr3L_22670001 RAL-325 701 chr3L 22761387 22761417 chr3L 22766821 22766848 Ivk 9 5433 1.0 3.0 2.0 3.0 5461 chr3L 22761387 intron SPoCk + chr3L 22764118 intron SPoCk + chr3L 22766848 intron SPoCk + chr3L_9_22760001 chr3L_22760001 RAL-325 702 chr3L 22829767 22829793 chr3L 22829865 22829872 6 92 4.5 5.0 4.8 1.0 105 chr3L 22829767 intron jim - chr3L 22829820 intron jim - chr3L 22829872 intron jim - chr3L_6_22825001 chr3L_22825001 RAL-325 703 chr3L 22838586 22838621 chr3L 22838666 22838701 8 78 3.0 1.5 2.2 2.5 115 chr3L 22838586 intergenic CG11226 + chr3L 22838644 intergenic CG11226 + chr3L 22838701 intergenic not near genes chr3L_8_22835001 chr3L_22835001 RAL-325 704 chr3L 22853695 22853722 chr3L 22853781 22853808 6 86 1.0 0.5 0.8 3.3 113 chr3L 22853695 5` UTR CR43426 + chr3L 22853752 5` UTR CR43426 + chr3L 22853808 5` UTR CR43426 + chr3L_6_22850001 chr3L_22850001 RAL-325 705 chr3L 22865986 22866000 chr3L 22867119 22867132 Doc 8 1132 4.5 3.0 3.8 1.7 1146 chr3L 22865986 intron CG33170 + chr3L 22866559 intron CG33170 + chr3L 22867132 intron CG33170 + chr3L_8_22865001 chr3L_22865001 RAL-325 706 chr3L 22912765 22912792 chr3L 22912846 22912873 9 80 3.5 1.0 2.2 2.8 108 chr3L 22912765 intron CG12768 + chr3L 22912819 intron CG12768 + chr3L 22912873 intron CG12768 + chr3L_9_22910001 chr3L_22910001 RAL-325 707 chr3L 22915171 22915197 chr3L 22915277 22915303 5 105 0.5 1.5 1.0 2.5 132 chr3L 22915171 intron CG12768 + chr3L 22915237 intron CG12768 + chr3L 22915303 intron CG12768 + chr3L_5_22915001 chr3L_22915001 RAL-325 708 chr3L 24363243 24363272 chr3L 24363315 24363349 8 74 2.0 2.5 2.2 2.5 106 chr3L 24363243 intron nvd + chr3L 24363296 intron nvd + chr3L 24363349 intron nvd + chr3L_8_24360001 chr3L_24360001 RAL-325 709 chr3L 25514874 25514904 chr3L 25514966 25514968 6 85 1.5 3.0 2.2 1.9 94 chr3L 25514874 intron CG41343 - chr3L 25514921 intron CG41343 - chr3L 25514968 intron CG41343 - chr3L_6_25510001 chr3L_25510001 RAL-325 710 chr3L 25886870 25886894 chr3L 25887271 25887297 4 402 0.0 1.5 0.8 2.2 427 chr3L 25886870 intron CG40178 - chr3L 25887084 intron CG40178 - chr3L 25887297 intron CG40178 - chr3L_4_25885001 chr3L_25885001 RAL-325 711 chr3L 27167945 27167968 chr3L 27168065 27168081 4 118 2.0 0.5 1.2 1.8 136 chr3L 27167945 intergenic not near genes chr3L 27168013 intergenic not near genes chr3L 27168081 intergenic not near genes chr3L_4_27165001 chr3L_27165001 RAL-325 712 chr3R 2534134 2534153 chr3R 2541703 2541718 7 7568 10.0 10.5 10.2 0.6 7584 chr3R 2534134 intergenic not near genes chr3R 2537926 intergenic not near genes chr3R 2541718 intergenic not near genes chr3R_7_2535001 chr3R_2535001 RAL-325 713 chr3R 2534157 2534164 chr3R 2541701 2541732 5 7564 8.5 7.5 8.0 0.6 7575 chr3R 2534157 intergenic not near genes chr3R 2537944 intergenic not near genes chr3R 2541732 intergenic not near genes chr3R_5_2535001 chr3R_2535001 RAL-325 714 chr3R 4366756 4366780 chr3R 4375139 4375160 roo 4 8382 2.5 0.5 1.5 1.6 8404 chr3R 4366756 3` UTR CG1090 + chr3R 4370958 intergenic not near genes chr3R 4375160 5` UTR CR44922 + chr3R_4_4370001 chr3R_4370001 RAL-325 715 chr3R 4408424 4408443 chr3R 4412725 4412742 Juan 6 4302 3.5 6.5 5.0 1.0 4318 chr3R 4408424 intron CG32944 - chr3R 4410583 intron CG32944 - chr3R 4412742 intron CG32944 - chr3R_6_4410001 chr3R_4410001 RAL-325 716 chr3R 4753241 4753268 chr3R 4757544 4757571 F-element 5 4301 5.5 4.5 5.0 0.8 4330 chr3R 4753241 intron,intron atms +,CG44098 - chr3R 4755406 intron,intron atms +,CG44098 - chr3R 4757571 intron,exon atms +,CG44098 - chr3R_5_4755001 chr3R_4755001 RAL-325 717 chr3R 4769168 4769190 chr3R 4769237 4769268 9 72 1.5 1.5 1.5 3.6 100 chr3R 4769168 intron,intron atms +,CG44098 - chr3R 4769218 intron,intron atms +,CG44098 - chr3R 4769268 intron,intron atms +,CG44098 - chr3R_9_4765001 chr3R_4765001 RAL-325 718 chr3R 4975950 4975965 chr3R 4976034 4976041 6 94 4.0 0.5 2.2 1.9 91 chr3R 4975950 intergenic not near genes chr3R 4975996 intergenic not near genes chr3R 4976041 intergenic not near genes chr3R_6_4975001 chr3R_4975001 RAL-325 719 chr3R 5045856 5045878 chr3R 5052958 5052970 HMS-Beagle 5 7100 3.5 3.0 3.2 1.2 7114 chr3R 5045856 intron CR43635 - chr3R 5049413 intergenic not near genes chr3R 5052970 intergenic CR45588 - chr3R_5_5045001 chr3R_5045001 RAL-325 720 chr3R 5236222 5236241 chr3R 5236350 5236369 4 128 3.5 7.5 5.5 0.6 147 chr3R 5236222 3` UTR,3` UTR Mms19 +,rtp - chr3R 5236296 3` UTR rtp - chr3R 5236369 3` UTR rtp - chr3R_4_5235001 chr3R_5235001 RAL-325 721 chr3R 5278091 5278121 chr3R 5278170 5278202 6 80 1.5 2.0 1.8 2.1 111 chr3R 5278091 intron mtd - chr3R 5278146 intron mtd - chr3R 5278202 intron mtd - chr3R_6_5275001 chr3R_5275001 RAL-325 722 chr3R 5338399 5338430 chr3R 5343576 5343578 Rt1c 18 5173 1.5 5.0 3.2 4.3 5179 chr3R 5338399 intron mtd - chr3R 5340988 intron mtd - chr3R 5343578 intron mtd - chr3R_18_5340001 chr3R_5340001 RAL-325 723 chr3R 5445964 5445990 chr3R 5452420 5452449 Burdock 5 6458 1.5 1.5 1.5 2.0 6485 chr3R 5445964 intron CG14669 + chr3R 5449206 intron CG14669 + chr3R 5452449 intron CG14669 + chr3R_5_5445001 chr3R_5445001 RAL-325 724 chr3R 5680784 5680819 chr3R 5680868 5680882 7 79 1.5 1.0 1.2 3.2 98 chr3R 5680784 3` UTR Rab23 - chr3R 5680833 3` UTR Rab23 - chr3R 5680882 3` UTR Rab23 - chr3R_7_5680001 chr3R_5680001 RAL-325 725 chr3R 5688780 5688814 chr3R 5688901 5688932 6 119 1.5 2.5 2.0 2.0 152 chr3R 5688780 intron plx + chr3R 5688856 intron plx + chr3R 5688932 intron plx + chr3R_6_5685001 chr3R_5685001 RAL-325 726 chr3R 5698113 5698126 chr3R 5698207 5698218 7 93 5.0 1.5 3.2 1.7 105 chr3R 5698113 intron plx + chr3R 5698166 intron plx + chr3R 5698218 intron plx + chr3R_7_5695001 chr3R_5695001 RAL-325 727 chr3R 5746016 5746040 chr3R 5746256 5746280 pogo 5 240 2.0 6.5 4.2 1.0 264 chr3R 5746016 3` UTR Madm + chr3R 5746148 3` UTR Madm + chr3R 5746280 3` UTR Madm + chr3R_5_5745001 chr3R_5745001 RAL-325 728 chr3R 5747024 5747043 chr3R 5753215 5753233 diver 4 6189 2.0 5.0 3.5 0.9 6209 chr3R 5747024 intergenic Madm + chr3R 5750128 intergenic not near genes chr3R 5753233 intergenic CG2091 - chr3R_4_5750001 chr3R_5750001 RAL-325 729 chr3R 5765655 5765658 chr3R 5765714 5765740 5 69 3.0 4.0 3.5 1.1 85 chr3R 5765655 intron CG2082 - chr3R 5765698 intron CG2082 - chr3R 5765740 intron CG2082 - chr3R_5_5765001 chr3R_5765001 RAL-325 730 chr3R 5822383 5822410 chr3R 5823550 5823577 1360 9 1166 2.0 5.0 3.5 2.0 1194 chr3R 5822383 3` UTR CG2023 - chr3R 5822980 3` UTR CG2023 - chr3R 5823577 3` UTR CG2023 - chr3R_9_5820001 chr3R_5820001 RAL-325 731 chr3R 5927572 5927589 chr3R 5927812 5927827 pogo 8 238 2.0 6.5 4.2 1.5 255 chr3R 5927572 intron CG34113 - chr3R 5927700 intron CG34113 - chr3R 5927827 intron CG34113 - chr3R_8_5925001 chr3R_5925001 RAL-325 732 chr3R 5947990 5947996 chr3R 5948057 5948089 4 82 2.0 2.0 2.0 1.3 99 chr3R 5947990 intron CG34113 - chr3R 5948040 intron CG34113 - chr3R 5948089 intron CG34113 - chr3R_4_5945001 chr3R_5945001 RAL-325 733 chr3R 6012659 6012676 chr3R 6012737 6012753 7 77 0.0 4.0 2.0 2.3 94 chr3R 6012659 intergenic not near genes chr3R 6012706 intergenic not near genes chr3R 6012753 intergenic not near genes chr3R_7_6010001 chr3R_6010001 RAL-325 734 chr3R 6015970 6015990 chr3R 6024444 6024469 Tirant 5 8477 5.5 4.5 5.0 0.8 8499 chr3R 6015970 intergenic not near genes chr3R 6020220 intergenic not near genes chr3R 6024469 intergenic not near genes chr3R_5_6020001 chr3R_6020001 RAL-325 735 chr3R 6158511 6158542 chr3R 6167093 6167117 Tirant 6 8571 2.5 2.5 2.5 1.7 8606 chr3R 6158511 intergenic not near genes chr3R 6162814 intergenic not near genes chr3R 6167117 intergenic CG1077 + chr3R_6_6160001 chr3R_6160001 RAL-325 736 chr3R 6175176 6175194 chr3R 6182448 6182463 HMS-Beagle2 6 7271 4.0 4.5 4.2 1.2 7287 chr3R 6175176 intergenic Osi1 + chr3R 6178820 intron CR45194 + chr3R 6182463 intergenic CR45194 + chr3R_6_6175001 chr3R_6175001 RAL-325 737 chr3R 6191169 6191192 chr3R 6191249 6191272 6 78 2.5 2.0 2.2 1.9 103 chr3R 6191169 intron NPFR + chr3R 6191220 intron NPFR + chr3R 6191272 intron NPFR + chr3R_6_6190001 chr3R_6190001 RAL-325 738 chr3R 6217001 6217029 chr3R 6217241 6217269 7 240 3.5 5.5 4.5 1.3 268 chr3R 6217001 intron Osi3 + chr3R 6217135 intron Osi3 + chr3R 6217269 intron Osi3 + chr3R_7_6215001 chr3R_6215001 RAL-325 739 chr3R 6428809 6428822 chr3R 6428910 6428924 7 101 2.0 1.0 1.5 2.8 115 chr3R 6428809 intron gpp + chr3R 6428866 intron gpp + chr3R 6428924 intron gpp + chr3R_7_6425001 chr3R_6425001 RAL-325 740 chr3R 6473268 6473291 chr3R 6473380 6473400 5 110 1.5 2.5 2.0 1.7 132 chr3R 6473268 intergenic not near genes chr3R 6473334 intergenic not near genes chr3R 6473400 intergenic not near genes chr3R_5_6470001 chr3R_6470001 RAL-325 741 chr3R 6737501 6737524 chr3R 6739286 6739309 Doc 4 1784 2.5 3.5 3.0 1.0 1808 chr3R 6737501 intron pb - chr3R 6738405 intron pb - chr3R 6739309 intron pb - chr3R_4_6735001 chr3R_6735001 RAL-325 742 chr3R 6961181 6961203 chr3R 6961260 6961279 6 76 2.5 3.0 2.8 1.6 98 chr3R 6961181 intron Antp - chr3R 6961230 intron Antp - chr3R 6961279 intron Antp - chr3R_6_6960001 chr3R_6960001 RAL-325 743 chr3R 6978893 6978913 chr3R 6978978 6978994 5 83 3.0 3.0 3.0 1.2 101 chr3R 6978893 intron Antp - chr3R 6978944 intron Antp - chr3R 6978994 intron Antp - chr3R_5_6975001 chr3R_6975001 RAL-325 744 chr3R 7030701 7030730 chr3R 7030777 7030805 10 75 1.5 2.0 1.8 3.6 104 chr3R 7030701 intergenic not near genes chr3R 7030753 intergenic not near genes chr3R 7030805 intergenic not near genes chr3R_10_7030001 chr3R_7030001 RAL-325 745 chr3R 7126506 7126526 chr3R 7126601 7126620 6 94 1.5 1.5 1.5 2.4 114 chr3R 7126506 3` UTR CG10068 - chr3R 7126563 3` UTR CG10068 - chr3R 7126620 3` UTR CG10068 - chr3R_6_7125001 chr3R_7125001 RAL-325 746 chr3R 7217460 7217476 chr3R 7217678 7217695 4 220 2.5 1.5 2.0 1.3 235 chr3R 7217460 intergenic CG14605 -,CG14606 - chr3R 7217578 intergenic CG14605 -,CG14606 - chr3R 7217695 3` UTR CG14605 - chr3R_4_7215001 chr3R_7215001 RAL-325 747 chr3R 7230710 7230735 chr3R 7230978 7230994 5 267 2.5 2.5 2.5 1.4 284 chr3R 7230710 intron CG14608 + chr3R 7230852 intron CG14608 + chr3R 7230994 intron CG14608 + chr3R_5_7230001 chr3R_7230001 RAL-325 748 chr3R 7266680 7266709 chr3R 7266754 7266788 5 79 3.5 2.0 2.8 1.3 108 chr3R 7266680 intron Syt4 + chr3R 7266734 intron Syt4 + chr3R 7266788 intron Syt4 + chr3R_5_7265001 chr3R_7265001 RAL-325 749 chr3R 7551364 7551388 chr3R 7551458 7551483 4 88 1.5 0.0 0.8 2.2 119 chr3R 7551364 intergenic not near genes chr3R 7551424 intergenic not near genes chr3R 7551483 intergenic not near genes chr3R_4_7550001 chr3R_7550001 RAL-325 750 chr3R 7567285 7567307 chr3R 7567462 7567468 4 173 2.0 3.0 2.5 1.1 183 chr3R 7567285 intergenic not near genes chr3R 7567376 intergenic not near genes chr3R 7567468 intergenic not near genes chr3R_4_7565001 chr3R_7565001 RAL-325 751 chr3R 7621531 7621561 chr3R 7621621 7621651 4 89 0.0 1.5 0.8 2.2 120 chr3R 7621531 intron CG34127 - chr3R 7621591 intron CG34127 - chr3R 7621651 intron CG34127 - chr3R_4_7620001 chr3R_7620001 RAL-325 752 chr3R 7729466 7729499 chr3R 7737404 7737437 Stalker2 11 7937 2.0 5.5 3.8 2.3 7971 chr3R 7729466 intergenic not near genes chr3R 7733452 intergenic not near genes chr3R 7737437 intergenic not near genes chr3R_11_7730001 chr3R_7730001 RAL-325 753 chr3R 7760255 7760285 chr3R 7760764 7760793 6 508 1.0 1.5 1.2 2.7 538 chr3R 7760255 intron Sp7 + chr3R 7760524 intron Sp7 + chr3R 7760793 5` UTR Sp7 + chr3R_6_7760001 chr3R_7760001 RAL-325 754 chr3R 7971848 7971867 chr3R 7971927 7971943 4 76 1.0 2.5 1.8 1.4 95 chr3R 7971848 intergenic not near genes chr3R 7971896 intergenic not near genes chr3R 7971943 intergenic not near genes chr3R_4_7970001 chr3R_7970001 RAL-325 755 chr3R 8101767 8101787 chr3R 8104848 8104870 G2 5 3081 5.0 2.0 3.5 1.1 3103 chr3R 8101767 exon CG7900 + chr3R 8103318 intron CG7900 + chr3R 8104870 3` UTR CG7900 + chr3R_5_8100001 chr3R_8100001 RAL-325 756 chr3R 8150587 8150600 chr3R 8152531 8152553 6 1952 13.0 8.5 10.8 0.5 1966 chr3R 8150587 intron grn - chr3R 8151570 intron grn - chr3R 8152553 intron grn - chr3R_6_8150001 chr3R_8150001 RAL-325 757 chr3R 8339246 8339247 chr3R 21907534 21907536 15 13568288 15.5 13.0 14.2 1.0 13568290 chr3R 8339246 intergenic not near genes chr3R 15123391 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_15_15120001 chr3R_15120001 RAL-325 758 chr3R 8403008 8403039 chr3R 8412174 8412203 roo 13 9163 4.5 2.5 3.5 2.9 9195 chr3R 8403008 intron CG45263 - chr3R 8407606 intron CG45263 - chr3R 8412203 intron CG45263 - chr3R_13_8405001 chr3R_8405001 RAL-325 759 chr3R 8426191 8426228 chr3R 8426276 8426312 7 80 3.5 5.0 4.2 1.3 121 chr3R 8426191 intron CG45263 - chr3R 8426252 intron CG45263 - chr3R 8426312 intron CG45263 - chr3R_7_8425001 chr3R_8425001 RAL-325 760 chr3R 8554551 8554581 chr3R 8554672 8554704 5 120 2.0 0.5 1.2 2.3 153 chr3R 8554551 intergenic not near genes chr3R 8554628 intergenic not near genes chr3R 8554704 intergenic not near genes chr3R_5_8550001 chr3R_8550001 RAL-325 761 chr3R 8601775 8601800 chr3R 8610928 8610953 roo 4 9153 0.5 3.5 2.0 1.3 9178 chr3R 8601775 intron 5-HT2B + chr3R 8606364 intron 5-HT2B + chr3R 8610953 intron 5-HT2B + chr3R_4_8605001 chr3R_8605001 RAL-325 762 chr3R 8707352 8707382 chr3R 8709788 8709812 jockey 7 2438 1.5 1.5 1.5 2.8 2460 chr3R 8707352 intergenic not near genes chr3R 8708582 intergenic not near genes chr3R 8709812 intergenic not near genes chr3R_7_8705001 chr3R_8705001 RAL-325 763 chr3R 8798651 8798675 chr3R 8798734 8798755 4 80 3.0 2.5 2.8 1.1 104 chr3R 8798651 intron,intron Pif1A -,Pif1B - chr3R 8798703 intron,intron Pif1A -,Pif1B - chr3R 8798755 intron,intron Pif1A -,Pif1B - chr3R_4_8795001 chr3R_8795001 RAL-325 764 chr3R 8966662 8966677 chr3R 8966803 8966817 4 140 2.5 7.0 4.8 0.7 155 chr3R 8966662 intergenic not near genes chr3R 8966740 intergenic not near genes chr3R 8966817 intergenic not near genes chr3R_4_8965001 chr3R_8965001 RAL-325 765 chr3R 8969922 8969944 chr3R 8970007 8970035 8 89 0.5 2.0 1.2 3.6 113 chr3R 8969922 intergenic not near genes chr3R 8969978 intergenic not near genes chr3R 8970035 intergenic not near genes chr3R_8_8965001 chr3R_8965001 RAL-325 766 chr3R 9319582 9319603 chr3R 9320002 9320038 jockey 7 429 1.0 1.5 1.2 3.2 456 chr3R 9319582 intron CG8861 - chr3R 9319810 intron CG8861 - chr3R 9320038 intron CG8861 - chr3R_7_9315001 chr3R_9315001 RAL-325 767 chr3R 9644586 9644608 chr3R 9644666 9644684 9 80 2.0 3.5 2.8 2.4 98 chr3R 9644586 intron Dh44 + chr3R 9644635 intron Dh44 + chr3R 9644684 intron Dh44 + chr3R_9_9640001 chr3R_9640001 RAL-325 768 chr3R 9836325 9836344 chr3R 9836406 9836426 6 82 3.5 0.5 2.0 2.0 101 chr3R 9836325 intron Teh1 - chr3R 9836376 intron Teh1 - chr3R 9836426 intron Teh1 - chr3R_6_9835001 chr3R_9835001 RAL-325 769 chr3R 9898802 9898814 chr3R 9898881 9898905 4 88 1.5 3.0 2.2 1.2 103 chr3R 9898802 intron Glut4EF + chr3R 9898854 intron Glut4EF + chr3R 9898905 intron Glut4EF + chr3R_4_9895001 chr3R_9895001 RAL-325 770 chr3R 10073777 10073802 chr3R 10073885 10073910 5 106 4.0 0.5 2.2 1.6 133 chr3R 10073777 intergenic nerfin-2 +,CG5361 - chr3R 10073844 3` UTR CG5361 - chr3R 10073910 exon CG5361 - chr3R_5_10070001 chr3R_10070001 RAL-325 771 chr3R 10609526 10609555 chr3R 10609666 10609696 6 138 1.5 1.0 1.2 2.7 170 chr3R 10609526 intron hth - chr3R 10609611 intron hth - chr3R 10609696 intron hth - chr3R_6_10605001 chr3R_10605001 RAL-325 772 chr3R 10716316 10716334 chr3R 10716659 10716677 4 343 1.0 1.0 1.0 2.0 361 chr3R 10716316 intergenic CG4073 + chr3R 10716496 intergenic not near genes chr3R 10716677 intergenic not near genes chr3R_4_10715001 chr3R_10715001 RAL-325 773 chr3R 10732852 10732869 chr3R 10732937 10732953 5 85 1.0 1.5 1.2 2.3 101 chr3R 10732852 intergenic not near genes chr3R 10732902 intergenic not near genes chr3R 10732953 intergenic not near genes chr3R_5_10730001 chr3R_10730001 RAL-325 774 chr3R 10817221 10817250 chr3R 10817303 10817332 8 80 1.5 3.0 2.2 2.5 111 chr3R 10817221 3` UTR CG4089 + chr3R 10817276 3` UTR CG4089 + chr3R 10817332 3` UTR CG4089 + chr3R_8_10815001 chr3R_10815001 RAL-325 775 chr3R 10904920 10904936 chr3R 10905124 10905138 4 203 1.5 2.0 1.8 1.4 218 chr3R 10904920 intergenic not near genes chr3R 10905029 intergenic not near genes chr3R 10905138 intergenic not near genes chr3R_4_10905001 chr3R_10905001 RAL-325 776 chr3R 10919685 10919715 chr3R 10919762 10919793 6 77 4.0 4.0 4.0 1.2 108 chr3R 10919685 intergenic not near genes chr3R 10919739 intergenic not near genes chr3R 10919793 intergenic not near genes chr3R_6_10915001 chr3R_10915001 RAL-325 777 chr3R 10920047 10920078 chr3R 10920123 10920156 10 77 2.0 4.0 3.0 2.5 109 chr3R 10920047 intergenic not near genes chr3R 10920102 intergenic not near genes chr3R 10920156 intergenic not near genes chr3R_10_10920001 chr3R_10920001 RAL-325 778 chr3R 10963560 10963587 chr3R 10963653 10963680 7 92 2.0 3.5 2.8 1.8 120 chr3R 10963560 intergenic not near genes chr3R 10963620 intergenic not near genes chr3R 10963680 intergenic not near genes chr3R_7_10960001 chr3R_10960001 RAL-325 779 chr3R 11102702 11102717 chr3R 11102773 11102805 4 83 3.5 2.0 2.8 1.1 103 chr3R 11102702 intergenic not near genes chr3R 11102754 intergenic not near genes chr3R 11102805 intergenic not near genes chr3R_4_11100001 chr3R_11100001 RAL-325 780 chr3R 11325352 11325362 chr3R 11325439 11325457 4 93 2.5 5.5 4.0 0.8 105 chr3R 11325352 intergenic not near genes chr3R 11325404 intergenic not near genes chr3R 11325457 intergenic not near genes chr3R_4_11325001 chr3R_11325001 RAL-325 781 chr3R 11342556 11342561 chr3R 11342632 11342637 4 76 3.5 2.0 2.8 1.1 81 chr3R 11342556 intron pros + chr3R 11342596 intron pros + chr3R 11342637 intron pros + chr3R_4_11340001 chr3R_11340001 RAL-325 782 chr3R 11379244 11379268 chr3R 11388391 11388423 roo 10 9153 3.5 5.5 4.5 1.8 9179 chr3R 11379244 intron pros + chr3R 11383834 intron pros + chr3R 11388423 intron pros + chr3R_10_11380001 chr3R_11380001 RAL-325 783 chr3R 11483444 11483483 chr3R 11483529 11483554 7 78 0.0 4.5 2.2 2.2 110 chr3R 11483444 intergenic not near genes chr3R 11483499 intergenic not near genes chr3R 11483554 intergenic not near genes chr3R_7_11480001 chr3R_11480001 RAL-325 784 chr3R 11545987 11546005 chr3R 11546075 11546077 12 91 1.0 2.0 1.5 4.8 90 chr3R 11545987 intergenic not near genes chr3R 11546032 intergenic not near genes chr3R 11546077 intergenic not near genes chr3R_12_11545001 chr3R_11545001 RAL-325 785 chr3R 11694726 11694744 chr3R 11694818 11694834 6 92 2.0 4.0 3.0 1.5 108 chr3R 11694726 intergenic Fer3 - chr3R 11694780 intergenic Fer3 - chr3R 11694834 intergenic not near genes chr3R_6_11690001 chr3R_11690001 RAL-325 786 chr3R 11695744 11695772 chr3R 11695825 11695851 6 79 0.5 2.5 1.5 2.4 107 chr3R 11695744 intergenic not near genes chr3R 11695798 intergenic not near genes chr3R 11695851 intergenic not near genes chr3R_6_11695001 chr3R_11695001 RAL-325 787 chr3R 11710220 11710235 chr3R 11710283 11710312 11 71 3.5 2.5 3.0 2.8 92 chr3R 11710220 intergenic not near genes chr3R 11710266 intergenic not near genes chr3R 11710312 intergenic not near genes chr3R_11_11710001 chr3R_11710001 RAL-325 788 chr3R 11841062 11841100 chr3R 11846251 11846286 BS 7 5189 1.0 0.5 0.8 3.9 5224 chr3R 11841062 intron CG6959 - chr3R 11843674 intron CG6959 - chr3R 11846286 intron CG6959 - chr3R_7_11840001 chr3R_11840001 RAL-325 789 chr3R 11853455 11853472 chr3R 11853601 11853618 4 146 1.0 4.0 2.5 1.1 163 chr3R 11853455 intron CG6959 - chr3R 11853536 intron CG6959 - chr3R 11853618 intron CG6959 - chr3R_4_11850001 chr3R_11850001 RAL-325 790 chr3R 11859635 11859662 chr3R 11859717 11859743 8 80 3.5 1.5 2.5 2.3 108 chr3R 11859635 intron CG6959 - chr3R 11859689 intron CG6959 - chr3R 11859743 intron CG6959 - chr3R_8_11855001 chr3R_11855001 RAL-325 791 chr3R 12022885 12022916 chr3R 12025062 12025092 pogo 6 2176 0.5 2.0 1.2 2.7 2207 chr3R 12022885 intergenic not near genes chr3R 12023988 intergenic not near genes chr3R 12025092 intergenic not near genes chr3R_6_12020001 chr3R_12020001 RAL-325 792 chr3R 12097245 12097276 chr3R 12097345 12097380 4 101 1.5 2.0 1.8 1.4 135 chr3R 12097245 intron dpr17 + chr3R 12097312 intron dpr17 + chr3R 12097380 intron dpr17 + chr3R_4_12095001 chr3R_12095001 RAL-325 793 chr3R 12111907 12111917 chr3R 12111973 12111993 4 73 0.5 2.0 1.2 1.8 86 chr3R 12111907 intergenic dpr17 + chr3R 12111950 intergenic not near genes chr3R 12111993 intergenic not near genes chr3R_4_12110001 chr3R_12110001 RAL-325 794 chr3R 12328169 12328185 chr3R 12328279 12328295 4 110 4.0 0.5 2.2 1.2 126 chr3R 12328169 intergenic CR45584 + chr3R 12328232 intergenic CR45584 + chr3R 12328295 intergenic CR45584 + chr3R_4_12325001 chr3R_12325001 RAL-325 795 chr3R 12599004 12599030 chr3R 12599144 12599169 4 140 5.0 2.0 3.5 0.9 165 chr3R 12599004 intergenic not near genes chr3R 12599086 intergenic not near genes chr3R 12599169 intergenic not near genes chr3R_4_12595001 chr3R_12595001 RAL-325 796 chr3R 12665871 12665886 chr3R 12665935 12665961 6 71 0.5 3.0 1.8 2.1 90 chr3R 12665871 intron CG14395 + chr3R 12665916 intron CG14395 + chr3R 12665961 intron CG14395 + chr3R_6_12665001 chr3R_12665001 RAL-325 797 chr3R 12733480 12733507 chr3R 12733552 12733557 7 71 4.0 1.5 2.8 1.8 77 chr3R 12733480 intergenic not near genes chr3R 12733518 intergenic not near genes chr3R 12733557 intergenic not near genes chr3R_7_12730001 chr3R_12730001 RAL-325 798 chr3R 12836349 12836372 chr3R 12836425 12836449 5 76 2.0 2.5 2.2 1.6 100 chr3R 12836349 intergenic not near genes chr3R 12836399 intergenic not near genes chr3R 12836449 intergenic not near genes chr3R_5_12835001 chr3R_12835001 RAL-325 799 chr3R 12866492 12866519 chr3R 12866643 12866669 6 151 3.5 1.5 2.5 1.7 177 chr3R 12866492 intergenic not near genes chr3R 12866580 intergenic not near genes chr3R 12866669 intergenic not near genes chr3R_6_12865001 chr3R_12865001 RAL-325 800 chr3R 12953203 12953234 chr3R 12953566 12953597 12 361 0.0 2.5 1.2 5.5 394 chr3R 12953203 intron grsm - chr3R 12953400 intron grsm - chr3R 12953597 intron grsm - chr3R_12_12950001 chr3R_12950001 RAL-325 801 chr3R 12972555 12972583 chr3R 12972694 12972708 4 134 2.5 0.0 1.2 1.8 153 chr3R 12972555 intron CG7381 - chr3R 12972632 intron CG7381 - chr3R 12972708 intron CG7381 - chr3R_4_12970001 chr3R_12970001 RAL-325 802 chr3R 13073979 13074006 chr3R 13074058 13074084 9 78 2.0 2.0 2.0 3.0 105 chr3R 13073979 intron sim + chr3R 13074032 intron sim + chr3R 13074084 exon sim + chr3R_9_13070001 chr3R_13070001 RAL-325 803 chr3R 13143040 13143064 chr3R 13148617 13148640 mdg3 5 5576 0.5 1.0 0.8 2.8 5600 chr3R 13143040 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13145840 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13148640 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_5_13145001 chr3R_13145001 RAL-325 804 chr3R 13195952 13195977 chr3R 13196046 13196061 8 91 3.0 1.5 2.2 2.5 109 chr3R 13195952 intergenic not near genes chr3R 13196006 intergenic not near genes chr3R 13196061 intergenic not near genes chr3R_8_13195001 chr3R_13195001 RAL-325 805 chr3R 13418665 13418684 chr3R 13418740 13418760 5 76 0.5 2.0 1.2 2.3 95 chr3R 13418665 intergenic not near genes chr3R 13418712 intergenic not near genes chr3R 13418760 intergenic not near genes chr3R_5_13415001 chr3R_13415001 RAL-325 806 chr3R 13562624 13562648 chr3R 13562731 13562753 8 107 3.0 4.0 3.5 1.8 129 chr3R 13562624 intergenic not near genes chr3R 13562688 intergenic not near genes chr3R 13562753 intergenic not near genes chr3R_8_13560001 chr3R_13560001 RAL-325 807 chr3R 13598084 13598114 chr3R 13598162 13598192 10 77 2.0 1.0 1.5 4.0 108 chr3R 13598084 intergenic not near genes chr3R 13598138 intergenic not near genes chr3R 13598192 intergenic not near genes chr3R_10_13595001 chr3R_13595001 RAL-325 808 chr3R 13635949 13635974 chr3R 13636086 13636110 12 136 4.0 3.0 3.5 2.7 161 chr3R 13635949 3` UTR sqd - chr3R 13636030 3` UTR sqd - chr3R 13636110 3` UTR sqd - chr3R_12_13635001 chr3R_13635001 RAL-325 809 chr3R 13693028 13693028 chr3R 21907534 21907536 10 8214507 8.0 13.0 10.5 0.9 8214508 chr3R 13693028 3` UTR flfl + chr3R 17800282 exon CG17803 - chr3R 21907536 intergenic CG6678 + chr3R_10_17800001 chr3R_17800001 RAL-325 810 chr3R 13804006 13804167 chr3R 13804246 13804255 4 128 0.0 2.5 1.2 1.8 249 chr3R 13804006 intergenic not near genes chr3R 13804130 intergenic not near genes chr3R 13804255 intergenic not near genes chr3R_4_13800001 chr3R_13800001 RAL-325 811 chr3R 13816000 13816008 chr3R 13816077 13816088 4 86 0.0 2.5 1.2 1.8 88 chr3R 13816000 intergenic CR43641 +,CR43642 + chr3R 13816044 intergenic CR43642 +,CR43641 + chr3R 13816088 intergenic CR43642 +,CR43641 + chr3R_4_13815001 chr3R_13815001 RAL-325 812 chr3R 13824187 13824214 chr3R 13824263 13824277 5 73 1.0 2.0 1.5 2.0 90 chr3R 13824187 intergenic not near genes chr3R 13824232 intergenic not near genes chr3R 13824277 intergenic not near genes chr3R_5_13820001 chr3R_13820001 RAL-325 813 chr3R 13863687 13863706 chr3R 13863767 13863794 4 83 2.0 1.5 1.8 1.4 107 chr3R 13863687 intergenic not near genes chr3R 13863740 intergenic not near genes chr3R 13863794 intergenic not near genes chr3R_4_13860001 chr3R_13860001 RAL-325 814 chr3R 13975381 13975401 chr3R 13975460 13975480 7 78 1.5 2.0 1.8 2.5 99 chr3R 13975381 intron rdx - chr3R 13975430 intron rdx - chr3R 13975480 intron rdx - chr3R_7_13975001 chr3R_13975001 RAL-325 815 chr3R 14049026 14049047 chr3R 14049105 14049111 5 74 1.5 4.0 2.8 1.3 85 chr3R 14049026 intergenic not near genes chr3R 14049068 intergenic not near genes chr3R 14049111 intergenic not near genes chr3R_5_14045001 chr3R_14045001 RAL-325 816 chr3R 14083405 14083435 chr3R 14083505 14083536 7 101 0.5 0.0 0.2 5.8 131 chr3R 14083405 intron foxo + chr3R 14083470 intron foxo + chr3R 14083536 intron foxo + chr3R_7_14080001 chr3R_14080001 RAL-325 817 chr3R 14117440 14117473 chr3R 14117513 14117547 10 72 1.5 1.5 1.5 4.0 107 chr3R 14117440 intron Kif19A - chr3R 14117494 intron Kif19A - chr3R 14117547 intron Kif19A - chr3R_10_14115001 chr3R_14115001 RAL-325 818 chr3R 14357512 14357538 chr3R 14357920 14357943 4 407 1.5 2.0 1.8 1.4 431 chr3R 14357512 intron NK7.1 - chr3R 14357728 intron NK7.1 - chr3R 14357943 intron NK7.1 - chr3R_4_14355001 chr3R_14355001 RAL-325 819 chr3R 14485587 14485607 chr3R 14485755 14485775 8 167 3.0 6.0 4.5 1.5 188 chr3R 14485587 intergenic not near genes chr3R 14485681 intergenic not near genes chr3R 14485775 intergenic not near genes chr3R_8_14485001 chr3R_14485001 RAL-325 820 chr3R 14585678 14585706 chr3R 14585762 14585788 5 80 1.0 0.5 0.8 2.8 110 chr3R 14585678 intron stumps + chr3R 14585733 intron stumps + chr3R 14585788 intron stumps + chr3R_5_14585001 chr3R_14585001 RAL-325 821 chr3R 14671860 14671889 chr3R 14671947 14671975 6 81 2.0 5.0 3.5 1.3 115 chr3R 14671860 intron Meltrin - chr3R 14671918 intron Meltrin - chr3R 14671975 intron Meltrin - chr3R_6_14670001 chr3R_14670001 RAL-325 822 chr3R 14839465 14839483 chr3R 14839543 14839564 7 80 2.0 2.0 2.0 2.3 99 chr3R 14839465 intron btsz - chr3R 14839514 intron btsz - chr3R 14839564 intron btsz - chr3R_7_14835001 chr3R_14835001 RAL-325 823 chr3R 14971345 14971373 chr3R 14971442 14971473 10 99 3.0 2.0 2.5 2.9 128 chr3R 14971345 intergenic not near genes chr3R 14971409 intergenic not near genes chr3R 14971473 intergenic not near genes chr3R_10_14970001 chr3R_14970001 RAL-325 824 chr3R 15041431 15041435 chr3R 15045197 15045201 Doc 4 3767 1.5 2.0 1.8 1.4 3770 chr3R 15041431 intergenic not near genes chr3R 15043316 intergenic not near genes chr3R 15045201 intergenic not near genes chr3R_4_15040001 chr3R_15040001 RAL-325 825 chr3R 15078352 15078375 chr3R 15078431 15078454 5 80 0.5 1.5 1.0 2.5 102 chr3R 15078352 intergenic CG6974 - chr3R 15078403 intergenic CG6974 - chr3R 15078454 intergenic CG6974 - chr3R_5_15075001 chr3R_15075001 RAL-325 826 chr3R 15407073 15407086 chr3R 15407162 15407176 8 89 3.0 5.0 4.0 1.6 103 chr3R 15407073 intergenic CG6125 - chr3R 15407124 intergenic CG6125 - chr3R 15407176 intergenic CG6125 - chr3R_8_15405001 chr3R_15405001 RAL-325 827 chr3R 15407087 15407093 chr3R 15407157 15407178 6 82 2.0 4.5 3.2 1.4 91 chr3R 15407087 intergenic CG6125 - chr3R 15407132 intergenic CG6125 - chr3R 15407178 intergenic CG6125 - chr3R_6_15405001 chr3R_15405001 RAL-325 828 chr3R 15517599 15517633 chr3R 15517682 15517698 5 79 1.5 0.5 1.0 2.5 99 chr3R 15517599 intergenic not near genes chr3R 15517648 intergenic not near genes chr3R 15517698 intergenic not near genes chr3R_5_15515001 chr3R_15515001 RAL-325 829 chr3R 15570158 15570174 chr3R 15570236 15570254 4 84 0.5 0.5 0.5 2.7 96 chr3R 15570158 intergenic not near genes chr3R 15570206 intergenic not near genes chr3R 15570254 intergenic not near genes chr3R_4_15570001 chr3R_15570001 RAL-325 830 chr3R 15658512 15658546 chr3R 15658607 15658642 8 96 1.0 3.0 2.0 2.7 130 chr3R 15658512 intergenic not near genes chr3R 15658577 intergenic not near genes chr3R 15658642 intergenic not near genes chr3R_8_15655001 chr3R_15655001 RAL-325 831 chr3R 15752834 15752845 chr3R 15753150 15753177 6 328 3.0 3.0 3.0 1.5 343 chr3R 15752834 intergenic not near genes chr3R 15753006 intergenic not near genes chr3R 15753177 intergenic not near genes chr3R_6_15750001 chr3R_15750001 RAL-325 832 chr3R 15834503 15834526 chr3R 15834584 15834607 4 81 4.0 4.0 4.0 0.8 104 chr3R 15834503 intergenic CG43317 -,Arpc3A + chr3R 15834555 intergenic Arpc3A +,CG43317 - chr3R 15834607 intergenic Arpc3A +,CG43317 - chr3R_4_15830001 chr3R_15830001 RAL-325 833 chr3R 15844130 15844137 chr3R 15844205 15844235 4 92 1.0 1.0 1.0 2.0 105 chr3R 15844130 3` UTR spn-E + chr3R 15844182 3` UTR spn-E + chr3R 15844235 3` UTR spn-E + chr3R_4_15840001 chr3R_15840001 RAL-325 834 chr3R 15892657 15892679 chr3R 15892736 15892760 7 79 3.0 2.0 2.5 2.0 103 chr3R 15892657 intron CG14877 - chr3R 15892708 intron CG14877 - chr3R 15892760 intron CG14877 - chr3R_7_15890001 chr3R_15890001 RAL-325 835 chr3R 16000143 16000171 chr3R 16000224 16000254 11 81 3.5 2.5 3.0 2.8 111 chr3R 16000143 intron srp + chr3R 16000198 intron srp + chr3R 16000254 intron srp + chr3R_11_16000001 chr3R_16000001 RAL-325 836 chr3R 16011062 16011076 chr3R 16011160 16011184 5 112 0.5 1.5 1.0 2.5 122 chr3R 16011062 intron GATAe + chr3R 16011123 intron GATAe + chr3R 16011184 intron GATAe + chr3R_5_16010001 chr3R_16010001 RAL-325 837 chr3R 16023862 16023879 chr3R 16023939 16023956 7 75 1.0 0.0 0.5 4.7 94 chr3R 16023862 intergenic not near genes chr3R 16023909 intergenic not near genes chr3R 16023956 intergenic not near genes chr3R_7_16020001 chr3R_16020001 RAL-325 838 chr3R 16033415 16033429 chr3R 16033495 16033499 4 78 2.0 2.5 2.2 1.2 84 chr3R 16033415 intron pnr + chr3R 16033457 intron pnr + chr3R 16033499 intron pnr + chr3R_4_16030001 chr3R_16030001 RAL-325 839 chr3R 16189408 16189438 chr3R 16189811 16189841 invader4 4 402 2.0 0.0 1.0 2.0 433 chr3R 16189408 intron sra + chr3R 16189624 intron sra + chr3R 16189841 intron sra + chr3R_4_16185001 chr3R_16185001 RAL-325 840 chr3R 16225089 16225115 chr3R 16225174 16225200 7 85 1.5 2.5 2.0 2.3 111 chr3R 16225089 intergenic not near genes chr3R 16225144 intergenic not near genes chr3R 16225200 intergenic tara + chr3R_7_16225001 chr3R_16225001 RAL-325 841 chr3R 16374305 16374321 chr3R 16374421 16374438 5 115 1.5 2.0 1.8 1.8 133 chr3R 16374305 intergenic ss - chr3R 16374372 intergenic ss - chr3R 16374438 3` UTR ss - chr3R_5_16370001 chr3R_16370001 RAL-325 842 chr3R 16538241 16538275 chr3R 16538789 16538813 12 543 4.5 1.5 3.0 3.0 572 chr3R 16538241 intron CG42342 + chr3R 16538527 intron CG42342 + chr3R 16538813 intron CG42342 + chr3R_12_16535001 chr3R_16535001 RAL-325 843 chr3R 16555355 16555362 chr3R 16555424 16555454 4 85 2.0 1.5 1.8 1.4 99 chr3R 16555355 intron CG42342 + chr3R 16555404 intron CG42342 + chr3R 16555454 intron CG42342 + chr3R_4_16555001 chr3R_16555001 RAL-325 844 chr3R 16594752 16594784 chr3R 16594829 16594850 6 75 4.0 3.0 3.5 1.3 98 chr3R 16594752 5` UTR CG14892 + chr3R 16594801 5` UTR CG14892 + chr3R 16594850 5` UTR CG14892 + chr3R_6_16590001 chr3R_16590001 RAL-325 845 chr3R 16756322 16756339 chr3R 16762512 16762529 diver 5 6190 4.0 0.0 2.0 1.7 6207 chr3R 16756322 intron bxd - chr3R 16759426 intron bxd - chr3R 16762529 intron bxd - chr3R_5_16755001 chr3R_16755001 RAL-325 846 chr3R 17194411 17194418 chr3R 17194490 17194497 4 79 2.0 2.5 2.2 1.2 86 chr3R 17194411 intron Mur89F - chr3R 17194454 intron Mur89F - chr3R 17194497 intron Mur89F - chr3R_4_17190001 chr3R_17190001 RAL-325 847 chr3R 17217498 17217511 chr3R 17217826 17217839 4 328 1.5 1.0 1.2 1.8 341 chr3R 17217498 exon CG31262 - chr3R 17217668 exon CG31262 - chr3R 17217839 exon CG31262 - chr3R_4_17215001 chr3R_17215001 RAL-325 848 chr3R 17227312 17227315 chr3R 26242171 26242181 4 9014864 10.0 5.0 7.5 0.5 9014869 chr3R 17227312 intergenic not near genes chr3R 21734746 intergenic not near genes chr3R 26242181 intron CR42745 + chr3R_4_21730001 chr3R_21730001 RAL-325 849 chr3R 17346698 17346716 chr3R 17348260 17348279 F-element 5 1562 0.5 4.0 2.2 1.6 1581 chr3R 17346698 intron beat-IIa - chr3R 17347488 intron beat-IIa - chr3R 17348279 intron beat-IIa - chr3R_5_17345001 chr3R_17345001 RAL-325 850 chr3R 17522216 17522237 chr3R 17522309 17522321 4 90 1.0 0.0 0.5 2.7 105 chr3R 17522216 intergenic not near genes chr3R 17522268 intergenic not near genes chr3R 17522321 intergenic not near genes chr3R_4_17520001 chr3R_17520001 RAL-325 851 chr3R 17823219 17823232 chr3R 17823300 17823317 4 83 2.0 1.0 1.5 1.6 98 chr3R 17823219 intron tinc + chr3R 17823268 intron tinc + chr3R 17823317 intron tinc + chr3R_4_17820001 chr3R_17820001 RAL-325 852 chr3R 17925859 17925889 chr3R 17927326 17927356 hobo 4 1466 1.5 5.0 3.2 1.0 1497 chr3R 17925859 intron cpo + chr3R 17926608 intron cpo + chr3R 17927356 intron cpo + chr3R_4_17925001 chr3R_17925001 RAL-325 853 chr3R 18041757 18041777 chr3R 18041831 18041847 4 74 0.0 0.0 0.0 4.0 90 chr3R 18041757 intergenic not near genes chr3R 18041802 intergenic not near genes chr3R 18041847 intergenic not near genes chr3R_4_18040001 chr3R_18040001 RAL-325 854 chr3R 18140462 18140475 chr3R 18140515 18140553 7 74 2.5 0.5 1.5 2.8 91 chr3R 18140462 intergenic not near genes chr3R 18140508 intergenic not near genes chr3R 18140553 intergenic not near genes chr3R_7_18140001 chr3R_18140001 RAL-325 855 chr3R 18501596 18501623 chr3R 18501674 18501681 6 77 3.5 3.5 3.5 1.3 85 chr3R 18501596 intron fru - chr3R 18501638 intron fru - chr3R 18501681 intron fru - chr3R_6_18500001 chr3R_18500001 RAL-325 856 chr3R 18695761 18695771 chr3R 18695845 18695855 4 84 6.5 0.0 3.2 1.0 94 chr3R 18695761 3` UTR CG34282 + chr3R 18695808 intergenic CG34282 + chr3R 18695855 intergenic CG34282 + chr3R_4_18695001 chr3R_18695001 RAL-325 857 chr3R 18763065 18763091 chr3R 18763164 18763174 5 93 2.5 2.5 2.5 1.4 109 chr3R 18763065 intron CG7720 - chr3R 18763120 intron CG7720 - chr3R 18763174 intron CG7720 - chr3R_5_18760001 chr3R_18760001 RAL-325 858 chr3R 18812086 18812109 chr3R 18812164 18812187 5 78 1.0 4.5 2.8 1.3 101 chr3R 18812086 intron CG18208 - chr3R 18812136 intron CG18208 - chr3R 18812187 intron CG18208 - chr3R_5_18810001 chr3R_18810001 RAL-325 859 chr3R 18817519 18817540 chr3R 18817606 18817637 4 94 1.0 0.5 0.8 2.2 118 chr3R 18817519 intron CG18208 - chr3R 18817578 intron CG18208 - chr3R 18817637 intron CG18208 - chr3R_4_18815001 chr3R_18815001 RAL-325 860 chr3R 18862600 18862614 chr3R 18862684 18862698 4 84 0.0 1.5 0.8 2.2 98 chr3R 18862600 intergenic not near genes chr3R 18862649 intergenic not near genes chr3R 18862698 intergenic not near genes chr3R_4_18860001 chr3R_18860001 RAL-325 861 chr3R 18885941 18885963 chr3R 18886014 18886033 7 75 2.5 1.5 2.0 2.3 92 chr3R 18885941 intergenic not near genes chr3R 18885987 intergenic not near genes chr3R 18886033 intergenic not near genes chr3R_7_18885001 chr3R_18885001 RAL-325 862 chr3R 18988537 18988554 chr3R 18988789 18988813 4 257 2.0 1.5 1.8 1.4 276 chr3R 18988537 intron gukh + chr3R 18988675 intron gukh + chr3R 18988813 intron gukh + chr3R_4_18985001 chr3R_18985001 RAL-325 863 chr3R 18991393 18991421 chr3R 18991470 18991482 8 71 2.0 4.5 3.2 1.9 89 chr3R 18991393 intron gukh + chr3R 18991438 intron gukh + chr3R 18991482 intron gukh + chr3R_8_18990001 chr3R_18990001 RAL-325 864 chr3R 19205619 19205630 chr3R 19205700 19205711 6 81 3.0 2.0 2.5 1.7 92 chr3R 19205619 intergenic not near genes chr3R 19205665 intergenic not near genes chr3R 19205711 intergenic not near genes chr3R_6_19205001 chr3R_19205001 RAL-325 865 chr3R 19324884 19324908 chr3R 19324976 19325000 7 91 1.5 2.0 1.8 2.5 116 chr3R 19324884 intron Dl - chr3R 19324942 intron Dl - chr3R 19325000 intron Dl - chr3R_7_19320001 chr3R_19320001 RAL-325 866 chr3R 19340406 19340430 chr3R 19340483 19340507 7 77 2.0 4.5 3.2 1.7 101 chr3R 19340406 intergenic not near genes chr3R 19340456 intergenic not near genes chr3R 19340507 intergenic not near genes chr3R_7_19340001 chr3R_19340001 RAL-325 867 chr3R 19344683 19344698 chr3R 19344816 19344831 4 134 1.5 3.0 2.2 1.2 148 chr3R 19344683 intergenic not near genes chr3R 19344757 intergenic not near genes chr3R 19344831 intergenic not near genes chr3R_4_19340001 chr3R_19340001 RAL-325 868 chr3R 19382228 19382254 chr3R 19382399 19382412 6 169 2.0 0.5 1.2 2.7 184 chr3R 19382228 intron Ino80 - chr3R 19382320 intron Ino80 - chr3R 19382412 intron Ino80 - chr3R_6_19380001 chr3R_19380001 RAL-325 869 chr3R 19489642 19489664 chr3R 19489753 19489774 7 110 2.0 2.0 2.0 2.3 132 chr3R 19489642 intron,3` UTR Dys +,CG15025 - chr3R 19489708 intron,3` UTR Dys +,CG15025 - chr3R 19489774 intron,3` UTR Dys +,CG15025 - chr3R_7_19485001 chr3R_19485001 RAL-325 870 chr3R 19702328 19702355 chr3R 19702410 19702437 7 78 1.5 0.5 1.0 3.5 109 chr3R 19702328 intergenic not near genes chr3R 19702382 intergenic not near genes chr3R 19702437 intergenic not near genes chr3R_7_19700001 chr3R_19700001 RAL-325 871 chr3R 19716216 19716248 chr3R 19716293 19716324 7 76 0.0 0.0 0.0 7.0 108 chr3R 19716216 intergenic CG34286 - chr3R 19716270 intergenic CG34286 - chr3R 19716324 intergenic CG34286 - chr3R_7_19715001 chr3R_19715001 RAL-325 872 chr3R 19914023 19914039 chr3R 19914108 19914131 8 91 2.5 1.0 1.8 2.9 108 chr3R 19914023 3` UTR RhoGAP92B + chr3R 19914077 3` UTR RhoGAP92B + chr3R 19914131 3` UTR RhoGAP92B + chr3R_8_19910001 chr3R_19910001 RAL-325 873 chr3R 19952412 19952437 chr3R 19954211 19954240 8 1800 19.0 19.5 19.2 0.4 1828 chr3R 19952412 intron Hs6st - chr3R 19953326 intron Hs6st - chr3R 19954240 intron Hs6st - chr3R_8_19950001 chr3R_19950001 RAL-325 874 chr3R 20077048 20077066 chr3R 20077134 20077151 4 85 0.0 2.5 1.2 1.8 103 chr3R 20077048 intergenic not near genes chr3R 20077100 intergenic not near genes chr3R 20077151 intergenic not near genes chr3R_4_20075001 chr3R_20075001 RAL-325 875 chr3R 20266514 20266543 chr3R 20272985 20273013 Burdock 10 6468 1.5 1.5 1.5 4.0 6499 chr3R 20266514 intron cic + chr3R 20269764 intron cic + chr3R 20273013 intron cic + chr3R_10_20265001 chr3R_20265001 RAL-325 876 chr3R 20282278 20282309 chr3R 20282354 20282385 4 76 0.0 1.0 0.5 2.7 107 chr3R 20282278 intron cic + chr3R 20282332 intron cic + chr3R 20282385 intron cic + chr3R_4_20280001 chr3R_20280001 RAL-325 877 chr3R 20434843 20434854 chr3R 20435028 20435039 6 185 4.5 0.0 2.2 1.9 196 chr3R 20434843 intron Gfrl - chr3R 20434941 intron Gfrl - chr3R 20435039 intron Gfrl - chr3R_6_20430001 chr3R_20430001 RAL-325 878 chr3R 20592808 20592816 chr3R 20592904 20592912 4 96 0.0 5.0 2.5 1.1 104 chr3R 20592808 intergenic CG4159 -,bon + chr3R 20592860 intergenic CG4159 -,bon + chr3R 20592912 intergenic bon +,CG4159 - chr3R_4_20590001 chr3R_20590001 RAL-325 879 chr3R 20644649 20644668 chr3R 20644726 20644744 6 77 3.0 3.0 3.0 1.5 95 chr3R 20644649 3` UTR GluRIIE - chr3R 20644696 3` UTR GluRIIE - chr3R 20644744 3` UTR GluRIIE - chr3R_6_20640001 chr3R_20640001 RAL-325 880 chr3R 20801142 20801160 chr3R 20801215 20801237 6 73 2.0 1.5 1.8 2.1 95 chr3R 20801142 intron Syp + chr3R 20801190 intron Syp + chr3R 20801237 intron Syp + chr3R_6_20800001 chr3R_20800001 RAL-325 881 chr3R 21108047 21108066 chr3R 21108308 21108325 4 260 0.5 1.0 0.8 2.2 278 chr3R 21108047 intergenic Sec15 -,rtet + chr3R 21108186 intergenic Sec15 -,rtet + chr3R 21108325 intergenic rtet +,Sec15 - chr3R_4_21105001 chr3R_21105001 RAL-325 882 chr3R 21141685 21141701 chr3R 21150165 21150182 Tirant 4 8479 3.0 4.0 3.5 0.9 8497 chr3R 21141685 intron SNF4Agamma + chr3R 21145934 intron SNF4Agamma + chr3R 21150182 intron SNF4Agamma + chr3R_4_21145001 chr3R_21145001 RAL-325 883 chr3R 21150807 21150823 chr3R 21150941 21150957 4 132 0.5 0.5 0.5 2.7 150 chr3R 21150807 intron SNF4Agamma + chr3R 21150882 intron SNF4Agamma + chr3R 21150957 intron SNF4Agamma + chr3R_4_21150001 chr3R_21150001 RAL-325 884 chr3R 21154550 21154587 chr3R 21154755 21154802 9 211 1.0 0.0 0.5 6.0 252 chr3R 21154550 intron SNF4Agamma + chr3R 21154676 intron SNF4Agamma + chr3R 21154802 intron SNF4Agamma + chr3R_9_21150001 chr3R_21150001 RAL-325 885 chr3R 21163251 21163278 chr3R 21163329 21163356 4 78 1.5 0.5 1.0 2.0 105 chr3R 21163251 intron SNF4Agamma + chr3R 21163304 intron SNF4Agamma + chr3R 21163356 intron SNF4Agamma + chr3R_4_21160001 chr3R_21160001 RAL-325 886 chr3R 21430478 21430503 chr3R 21430555 21430582 5 78 5.0 1.0 3.0 1.2 104 chr3R 21430478 intron lbl - chr3R 21430530 intron lbl - chr3R 21430582 intron lbl - chr3R_5_21430001 chr3R_21430001 RAL-325 887 chr3R 21432384 21432417 chr3R 21432466 21432479 4 78 1.5 2.5 2.0 1.3 95 chr3R 21432384 intron lbl - chr3R 21432432 intron lbl - chr3R 21432479 intron lbl - chr3R_4_21430001 chr3R_21430001 RAL-325 888 chr3R 21506876 21506913 chr3R 21506959 21506993 4 80 0.0 4.0 2.0 1.3 117 chr3R 21506876 intron C15 + chr3R 21506934 intron C15 + chr3R 21506993 intron C15 + chr3R_4_21505001 chr3R_21505001 RAL-325 889 chr3R 21519993 21520137 chr3R 21520094 21520231 8 98 5.5 5.0 5.2 1.3 238 chr3R 21519993 intergenic not near genes chr3R 21520112 intergenic not near genes chr3R 21520231 intergenic not near genes chr3R_8_21520001 chr3R_21520001 RAL-325 890 chr3R 21583005 21583016 chr3R 21583106 21583117 4 101 4.0 3.5 3.8 0.8 112 chr3R 21583005 intron InR - chr3R 21583061 intron InR - chr3R 21583117 intron InR - chr3R_4_21580001 chr3R_21580001 RAL-325 891 chr3R 21609008 21609033 chr3R 21611641 21611646 NOF 5 2629 1.0 2.0 1.5 2.0 2638 chr3R 21609008 intron InR - chr3R 21610327 intron InR - chr3R 21611646 intron InR - chr3R_5_21610001 chr3R_21610001 RAL-325 892 chr3R 21883975 21884004 chr3R 21884049 21884081 9 76 0.5 2.0 1.2 4.1 106 chr3R 21883975 intron,3` UTR,3` UTR CR45046 -,CG31465 +,fit - chr3R 21884028 intron,3` UTR CR45046 -,fit - chr3R 21884081 3` UTR,exon CR45046 -,fit - chr3R_9_21880001 chr3R_21880001 RAL-325 893 chr3R 17389054 17389054 chr3R 21907534 21907534 7 4518480 14.5 13.0 13.8 0.5 4518480 chr3R 17389054 intron,3` UTR Brf -,lute + chr3R 19648294 5` UTR CG6195 - chr3R 21907534 intergenic CG6678 + chr3R_7_19645001 chr3R_19645001 RAL-325 894 chr3R 21907534 21907534 chr3R 28831801 28831802 22 6924268 17.5 18.5 18.0 1.2 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_22_25365001 chr3R_25365001 RAL-325 895 chr3R 9620954 9620956 chr3R 21907535 21907535 6 12286579 4.5 13.0 8.8 0.6 12286581 chr3R 9620954 intron CG8312 + chr3R 15764244 intergenic not near genes chr3R 21907535 intergenic CG6678 + chr3R_6_15760001 chr3R_15760001 RAL-325 896 chr3R 21907535 21907535 chr3R 28831801 28831804 49 6924266 17.5 18.5 18.0 2.6 6924269 chr3R 21907535 intergenic CG6678 + chr3R 25369670 intron Fur1 - chr3R 28831804 intron WASp - chr3R_49_25365001 chr3R_25365001 RAL-325 897 chr3R 21907536 21907536 chr3R 28831799 28831804 48 6924265 17.5 18.0 17.8 2.6 6924268 chr3R 21907536 intergenic CG6678 + chr3R 25369670 intron Fur1 - chr3R 28831804 intron WASp - chr3R_48_25365001 chr3R_25365001 RAL-325 898 chr3R 21907536 21907536 chr3R 29013340 29013340 4 7105804 17.5 12.0 14.8 0.3 7105804 chr3R 21907536 intergenic CG6678 + chr3R 25460438 intron Fur1 - chr3R 29013340 intron wat - chr3R_4_25460001 chr3R_25460001 RAL-325 899 chr3R 21985232 21985260 chr3R 21985337 21985356 7 103 0.5 1.0 0.8 3.9 124 chr3R 21985232 intron Eip93F + chr3R 21985294 intron Eip93F + chr3R 21985356 intron Eip93F + chr3R_7_21985001 chr3R_21985001 RAL-325 900 chr3R 22239492 22239515 chr3R 22248551 22248575 roo 6 9059 1.0 2.0 1.5 2.4 9083 chr3R 22239492 intron SKIP + chr3R 22244034 intron SKIP + chr3R 22248575 intron SKIP + chr3R_6_22240001 chr3R_22240001 RAL-325 901 chr3R 22516416 22516424 chr3R 22516487 22516504 4 78 2.0 3.5 2.8 1.1 88 chr3R 22516416 intron Octbeta1R + chr3R 22516460 intron Octbeta1R + chr3R 22516504 intron Octbeta1R + chr3R_4_22515001 chr3R_22515001 RAL-325 902 chr3R 22711241 22711248 chr3R 22711298 22711324 4 68 1.0 4.0 2.5 1.1 83 chr3R 22711241 3` UTR wge - chr3R 22711282 3` UTR wge - chr3R 22711324 3` UTR wge - chr3R_4_22710001 chr3R_22710001 RAL-325 903 chr3R 22797764 22797913 chr3R 22797849 22798008 4 90 0.0 1.0 0.5 2.7 244 chr3R 22797764 intergenic not near genes chr3R 22797886 intergenic not near genes chr3R 22798008 intergenic not near genes chr3R_4_22795001 chr3R_22795001 RAL-325 904 chr3R 22802900 22802934 chr3R 22802980 22803014 4 80 0.5 0.5 0.5 2.7 114 chr3R 22802900 intergenic not near genes chr3R 22802957 intergenic not near genes chr3R 22803014 intergenic not near genes chr3R_4_22800001 chr3R_22800001 RAL-325 905 chr3R 22842388 22842409 chr3R 22842485 22842505 7 97 3.0 0.5 1.8 2.5 117 chr3R 22842388 intergenic not near genes chr3R 22842446 intergenic not near genes chr3R 22842505 intergenic not near genes chr3R_7_22840001 chr3R_22840001 RAL-325 906 chr3R 22846350 22846372 chr3R 22846827 22846841 4 475 2.5 3.5 3.0 1.0 491 chr3R 22846350 intergenic CG4704 - chr3R 22846596 intergenic CG4704 - chr3R 22846841 intergenic not near genes chr3R_4_22845001 chr3R_22845001 RAL-325 907 chr3R 22847798 22847827 chr3R 22847911 22847938 7 111 1.0 2.0 1.5 2.8 140 chr3R 22847798 intergenic not near genes chr3R 22847868 intergenic not near genes chr3R 22847938 intergenic not near genes chr3R_7_22845001 chr3R_22845001 RAL-325 908 chr3R 22913220 22913243 chr3R 22913294 22913318 5 75 1.0 3.0 2.0 1.7 98 chr3R 22913220 intron klg + chr3R 22913269 intron klg + chr3R 22913318 intron klg + chr3R_5_22910001 chr3R_22910001 RAL-325 909 chr3R 22953830 22953862 chr3R 22954482 22954490 15 648 0.0 0.5 0.2 12.5 660 chr3R 22953830 intron klg + chr3R 22954160 intron klg + chr3R 22954490 intron klg + chr3R_15_22950001 chr3R_22950001 RAL-325 910 chr3R 23073653 23073688 chr3R 23073742 23073773 9 84 4.0 2.0 3.0 2.2 120 chr3R 23073653 intron CG13830 - chr3R 23073713 intron CG13830 - chr3R 23073773 intron CG13830 - chr3R_9_23070001 chr3R_23070001 RAL-325 911 chr3R 23314064 23314069 chr3R 23314141 23314142 5 76 2.5 1.5 2.0 1.7 78 chr3R 23314064 intron pnt - chr3R 23314103 intron pnt - chr3R 23314142 intron pnt - chr3R_5_23310001 chr3R_23310001 RAL-325 912 chr3R 23493805 23493836 chr3R 23493934 23493967 8 131 0.0 4.5 2.2 2.5 162 chr3R 23493805 intergenic not near genes chr3R 23493886 intergenic not near genes chr3R 23493967 intergenic not near genes chr3R_8_23490001 chr3R_23490001 RAL-325 913 chr3R 23528276 23528283 chr3R 23528352 23528372 4 85 3.0 3.0 3.0 1.0 96 chr3R 23528276 intron CG10175 - chr3R 23528324 intron CG10175 - chr3R 23528372 intron CG10175 - chr3R_4_23525001 chr3R_23525001 RAL-325 914 chr3R 23548071 23548097 chr3R 23548375 23548386 4 298 2.5 3.0 2.8 1.1 315 chr3R 23548071 intergenic not near genes chr3R 23548228 intergenic not near genes chr3R 23548386 intergenic not near genes chr3R_4_23545001 chr3R_23545001 RAL-325 915 chr3R 23564446 23564469 chr3R 23564590 23564613 4 144 1.5 2.0 1.8 1.4 167 chr3R 23564446 intron beat-IV + chr3R 23564530 intron beat-IV + chr3R 23564613 intron beat-IV + chr3R_4_23560001 chr3R_23560001 RAL-325 916 chr3R 23668816 23668824 chr3R 23668870 23668897 5 72 0.5 1.0 0.8 2.8 81 chr3R 23668816 intron CG31145 - chr3R 23668856 intron CG31145 - chr3R 23668897 intron CG31145 - chr3R_5_23665001 chr3R_23665001 RAL-325 917 chr3R 23684697 23684716 chr3R 23685182 23685190 roo 4 482 4.0 11.0 7.5 0.5 493 chr3R 23684697 exon CG18754 + chr3R 23684944 intron CG18754 + chr3R 23685190 exon CG18754 + chr3R_4_23680001 chr3R_23680001 RAL-325 918 chr3R 23684717 23684722 chr3R 23685181 23685197 roo 4 468 2.5 11.0 6.8 0.5 480 chr3R 23684717 intron CG18754 + chr3R 23684957 intron CG18754 + chr3R 23685197 exon CG18754 + chr3R_4_23680001 chr3R_23680001 RAL-325 919 chr3R 23944913 23944936 chr3R 23944998 23945020 6 83 1.0 3.0 2.0 2.0 107 chr3R 23944913 intron CG12268 - chr3R 23944966 intron CG12268 - chr3R 23945020 exon CG12268 - chr3R_6_23940001 chr3R_23940001 RAL-325 920 chr3R 24015423 24015451 chr3R 24015497 24015527 5 76 0.0 0.5 0.2 4.2 104 chr3R 24015423 intron KrT95D - chr3R 24015475 intron KrT95D - chr3R 24015527 intron KrT95D - chr3R_5_24015001 chr3R_24015001 RAL-325 921 chr3R 24076927 24076946 chr3R 24078389 24078413 hobo 5 1463 1.0 1.5 1.2 2.3 1486 chr3R 24076927 intron 4EHP - chr3R 24077670 intron 4EHP - chr3R 24078413 intron 4EHP - chr3R_5_24075001 chr3R_24075001 RAL-325 922 chr3R 24199739 24199769 chr3R 24199817 24199848 5 78 2.5 1.0 1.8 1.8 109 chr3R 24199739 intron twin - chr3R 24199794 intron twin - chr3R 24199848 intron twin - chr3R_5_24195001 chr3R_24195001 RAL-325 923 chr3R 24207218 24207237 chr3R 24212293 24212312 flea 4 5075 2.0 3.5 2.8 1.1 5094 chr3R 24207218 intron twin - chr3R 24209765 intron twin - chr3R 24212312 intron twin - chr3R_4_24205001 chr3R_24205001 RAL-325 924 chr3R 24670055 24670197 chr3R 24670165 24670281 7 97 0.0 0.0 0.0 7.0 226 chr3R 24670055 intron slo + chr3R 24670168 intron slo + chr3R 24670281 intron slo + chr3R_7_24670001 chr3R_24670001 RAL-325 925 chr3R 24789982 24790010 chr3R 24790127 24790155 7 143 3.0 1.5 2.2 2.2 173 chr3R 24789982 intron,5` UTR Ets96B +,CG13634 - chr3R 24790068 intron,5` UTR Ets96B +,CG13634 - chr3R 24790155 intron Ets96B + chr3R_7_24790001 chr3R_24790001 RAL-325 926 chr3R 24854906 24854914 chr3R 24854988 24854995 4 82 0.0 4.0 2.0 1.3 89 chr3R 24854906 3` UTR HdacX - chr3R 24854950 3` UTR HdacX - chr3R 24854995 3` UTR HdacX - chr3R_4_24850001 chr3R_24850001 RAL-325 927 chr3R 24927125 24927164 chr3R 24931915 24931931 Doc 10 4786 3.0 3.0 3.0 2.5 4806 chr3R 24927125 intergenic Trf4-2 + chr3R 24929528 intergenic not near genes chr3R 24931931 intergenic CG11771 + chr3R_10_24925001 chr3R_24925001 RAL-325 928 chr3R 25004906 25004921 chr3R 25004983 25005004 4 80 1.0 3.0 2.0 1.3 98 chr3R 25004906 intron tnc + chr3R 25004955 intron tnc + chr3R 25005004 intron tnc + chr3R_4_25000001 chr3R_25000001 RAL-325 929 chr3R 25019489 25019510 chr3R 25024236 25024244 4 4734 28.5 21.5 25.0 0.2 4755 chr3R 25019489 exon tnc + chr3R 25021866 3` UTR tnc + chr3R 25024244 exon beta4GalT7 + chr3R_4_25020001 chr3R_25020001 RAL-325 930 chr3R 25027557 25027565 chr3R 25027762 25027766 5 209 3.0 3.5 3.2 1.2 209 chr3R 25027557 intron Hr96 + chr3R 25027662 intron Hr96 + chr3R 25027766 intron Hr96 + chr3R_5_25025001 chr3R_25025001 RAL-325 931 chr3R 25093135 25093156 chr3R 25093383 25093403 5 247 4.0 0.0 2.0 1.7 268 chr3R 25093135 intergenic not near genes chr3R 25093269 intergenic not near genes chr3R 25093403 intergenic not near genes chr3R_5_25090001 chr3R_25090001 RAL-325 932 chr3R 25203342 25203378 chr3R 25203472 25203504 10 127 5.5 1.5 3.5 2.2 162 chr3R 25203342 intron,intron Cad96Ca -,CG13654 + chr3R 25203423 intron,intron Cad96Ca -,CG13654 + chr3R 25203504 intron,intron Cad96Ca -,CG13654 + chr3R_10_25200001 chr3R_25200001 RAL-325 933 chr3R 25209603 25209630 chr3R 25209684 25209712 5 79 1.5 2.5 2.0 1.7 109 chr3R 25209603 intron CG13654 + chr3R 25209658 intron CG13654 + chr3R 25209712 intron CG13654 + chr3R_5_25205001 chr3R_25205001 RAL-325 934 chr3R 25296168 25296197 chr3R 25296248 25296277 8 78 2.0 2.0 2.0 2.7 109 chr3R 25296168 3` UTR CG31097 - chr3R 25296222 3` UTR CG31097 - chr3R 25296277 3` UTR CG31097 - chr3R_8_25295001 chr3R_25295001 RAL-325 935 chr3R 25374842 25374870 chr3R 25374920 25374948 4 76 1.0 1.0 1.0 2.0 106 chr3R 25374842 intron Fur1 - chr3R 25374895 intron Fur1 - chr3R 25374948 intron Fur1 - chr3R_4_25370001 chr3R_25370001 RAL-325 936 chr3R 25396986 25397000 chr3R 25397073 25397089 5 86 3.5 3.0 3.2 1.2 103 chr3R 25396986 exon Fur1 - chr3R 25397038 exon Fur1 - chr3R 25397089 exon Fur1 - chr3R_5_25395001 chr3R_25395001 RAL-325 937 chr3R 25549921 25549947 chr3R 25550009 25550034 4 87 0.0 1.0 0.5 2.7 113 chr3R 25549921 intron msi + chr3R 25549978 intron msi + chr3R 25550034 intron msi + chr3R_4_25545001 chr3R_25545001 RAL-325 938 chr3R 25832699 25832724 chr3R 25841880 25841889 roo 5 9175 3.5 4.0 3.8 1.0 9190 chr3R 25832699 exon alpha4GT2 + chr3R 25837294 intron alpha4GT2 + chr3R 25841889 exon alpha4GT2 + chr3R_5_25835001 chr3R_25835001 RAL-325 939 chr3R 25843644 25843662 chr3R 25843774 25843792 4 130 3.0 2.5 2.8 1.1 148 chr3R 25843644 intergenic CR45653 + chr3R 25843718 intergenic CR45653 + chr3R 25843792 intergenic CR45653 + chr3R_4_25840001 chr3R_25840001 RAL-325 940 chr3R 25927512 25927524 chr3R 25927593 25927606 7 82 7.0 0.0 3.5 1.6 94 chr3R 25927512 intron CCAP-R - chr3R 25927559 intron CCAP-R - chr3R 25927606 intron CCAP-R - chr3R_7_25925001 chr3R_25925001 RAL-325 941 chr3R 26193340 26193359 chr3R 26193422 26193441 8 82 1.0 3.0 2.0 2.7 101 chr3R 26193340 intergenic not near genes chr3R 26193390 intergenic not near genes chr3R 26193441 intergenic not near genes chr3R_8_26190001 chr3R_26190001 RAL-325 942 chr3R 26376327 26376340 chr3R 26385485 26385485 roo 6 9156 5.5 0.5 3.0 1.5 9158 chr3R 26376327 intergenic not near genes chr3R 26380906 intergenic not near genes chr3R 26385485 intergenic not near genes chr3R_6_26380001 chr3R_26380001 RAL-325 943 chr3R 26376341 26376353 chr3R 26385483 26385510 roo 5 9153 4.5 0.5 2.5 1.4 9169 chr3R 26376341 intergenic not near genes chr3R 26380926 intergenic not near genes chr3R 26385510 intergenic not near genes chr3R_5_26380001 chr3R_26380001 RAL-325 944 chr3R 26492688 26492708 chr3R 26492812 26492834 4 125 1.5 2.0 1.8 1.4 146 chr3R 26492688 intron plum - chr3R 26492761 intron plum - chr3R 26492834 intron plum - chr3R_4_26490001 chr3R_26490001 RAL-325 945 chr3R 26542044 26542076 chr3R 26542135 26542164 6 83 0.5 2.0 1.2 2.7 120 chr3R 26542044 intron scrib + chr3R 26542104 intron scrib + chr3R 26542164 intron scrib + chr3R_6_26540001 chr3R_26540001 RAL-325 946 chr3R 26642746 26642753 chr3R 26643140 26643143 jockey 7 393 4.5 3.5 4.0 1.4 397 chr3R 26642746 intergenic not near genes chr3R 26642944 intergenic not near genes chr3R 26643143 intergenic not near genes chr3R_7_26640001 chr3R_26640001 RAL-325 947 chr3R 26660649 26660679 chr3R 26660731 26660763 6 82 4.5 5.0 4.8 1.0 114 chr3R 26660649 intron beat-VII - chr3R 26660706 intron beat-VII - chr3R 26660763 intron beat-VII - chr3R_6_26660001 chr3R_26660001 RAL-325 948 chr3R 26669667 26669687 chr3R 26669749 26669769 9 82 2.5 2.0 2.2 2.8 102 chr3R 26669667 intron beat-VII - chr3R 26669718 intron beat-VII - chr3R 26669769 intron beat-VII - chr3R_9_26665001 chr3R_26665001 RAL-325 949 chr3R 26671955 26671963 chr3R 26672042 26672051 4 87 0.0 2.0 1.0 2.0 96 chr3R 26671955 intron beat-VII - chr3R 26672003 intron beat-VII - chr3R 26672051 intron beat-VII - chr3R_4_26670001 chr3R_26670001 RAL-325 950 chr3R 26844716 26844747 chr3R 26844795 26844826 13 77 1.5 3.5 2.5 3.7 110 chr3R 26844716 intron Lerp - chr3R 26844771 intron Lerp - chr3R 26844826 intron Lerp - chr3R_13_26840001 chr3R_26840001 RAL-325 951 chr3R 26845587 26845600 chr3R 26845666 26845680 5 80 4.5 4.5 4.5 0.9 93 chr3R 26845587 intron Lerp - chr3R 26845634 intron Lerp - chr3R 26845680 intron Lerp - chr3R_5_26845001 chr3R_26845001 RAL-325 952 chr3R 26949766 26949793 chr3R 26950012 26950039 5 244 1.5 0.0 0.8 2.8 273 chr3R 26949766 3` UTR CG6330 - chr3R 26949902 3` UTR CG6330 - chr3R 26950039 3` UTR CG6330 - chr3R_5_26945001 chr3R_26945001 RAL-325 953 chr3R 26981090 26981111 chr3R 26981174 26981193 4 83 0.5 1.5 1.0 2.0 103 chr3R 26981090 intron CG14253 + chr3R 26981142 intron CG14253 + chr3R 26981193 intron CG14253 + chr3R_4_26980001 chr3R_26980001 RAL-325 954 chr3R 27041834 27041844 chr3R 27041922 27041934 4 87 3.0 3.0 3.0 1.0 100 chr3R 27041834 intron RYa-R + chr3R 27041884 intron RYa-R + chr3R 27041934 intron RYa-R + chr3R_4_27040001 chr3R_27040001 RAL-325 955 chr3R 27140514 27140539 chr3R 27148123 27148149 412 7 7606 2.5 0.0 1.2 3.2 7635 chr3R 27140514 intron CG6051 - chr3R 27144332 intron CG6051 - chr3R 27148149 intron CG6051 - chr3R_7_27140001 chr3R_27140001 RAL-325 956 chr3R 27200164 27200178 chr3R 27200241 27200256 6 82 2.5 2.5 2.5 1.7 92 chr3R 27200164 intergenic not near genes chr3R 27200210 intergenic not near genes chr3R 27200256 intergenic not near genes chr3R_6_27200001 chr3R_27200001 RAL-325 957 chr3R 27225589 27225603 chr3R 27225680 27225694 4 91 3.0 2.0 2.5 1.1 105 chr3R 27225589 intergenic not near genes chr3R 27225642 intergenic not near genes chr3R 27225694 intergenic not near genes chr3R_4_27225001 chr3R_27225001 RAL-325 958 chr3R 27300518 27300528 chr3R 27300593 27300608 4 77 2.0 2.5 2.2 1.2 90 chr3R 27300518 intron CG3339 - chr3R 27300563 intron CG3339 - chr3R 27300608 intron CG3339 - chr3R_4_27300001 chr3R_27300001 RAL-325 959 chr3R 27342801 27342823 chr3R 27351382 27351402 Tirant 5 8580 0.5 2.5 1.5 2.0 8601 chr3R 27342801 intron CG42534 + chr3R 27347102 intron CG42534 + chr3R 27351402 intron CG42534 + chr3R_5_27345001 chr3R_27345001 RAL-325 960 chr3R 27366253 27366265 chr3R 27366339 27366350 5 85 3.0 0.0 1.5 2.0 97 chr3R 27366253 intron CG42534 + chr3R 27366302 intron CG42534 + chr3R 27366350 intron CG42534 + chr3R_5_27365001 chr3R_27365001 RAL-325 961 chr3R 27492378 27492410 chr3R 27492464 27492495 7 85 2.0 0.0 1.0 3.5 117 chr3R 27492378 intergenic not near genes chr3R 27492436 intergenic not near genes chr3R 27492495 intergenic not near genes chr3R_7_27490001 chr3R_27490001 RAL-325 962 chr3R 27521157 27521175 chr3R 27530365 27530384 roo 7 9208 2.5 1.0 1.8 2.5 9227 chr3R 27521157 intron CG12885 + chr3R 27525770 intron CG12885 + chr3R 27530384 intron CG12885 + chr3R_7_27525001 chr3R_27525001 RAL-325 963 chr3R 27578500 27578515 chr3R 27578580 27578604 5 88 1.0 0.5 0.8 2.8 104 chr3R 27578500 intron wdb - chr3R 27578552 intron wdb - chr3R 27578604 intron wdb - chr3R_5_27575001 chr3R_27575001 RAL-325 964 chr3R 27648597 27648854 chr3R 27648671 27648927 6 72 8.5 0.0 4.2 1.2 330 chr3R 27648597 intron tau - chr3R 27648762 intron tau - chr3R 27648927 intron tau - chr3R_6_27645001 chr3R_27645001 RAL-325 965 chr3R 27789100 27789116 chr3R 27789156 27789159 6 62 1.5 2.0 1.8 2.1 59 chr3R 27789100 exon CG34353 - chr3R 27789130 intron CG34353 - chr3R 27789159 intron CG34353 - chr3R_6_27785001 chr3R_27785001 RAL-325 966 chr3R 27799944 27799959 chr3R 27800025 27800039 5 81 3.0 2.5 2.8 1.3 95 chr3R 27799944 intron CG34353 - chr3R 27799992 intron CG34353 - chr3R 27800039 intron CG34353 - chr3R_5_27795001 chr3R_27795001 RAL-325 967 chr3R 27807449 27807467 chr3R 27807518 27807552 8 82 3.5 2.0 2.8 2.1 103 chr3R 27807449 intron CG34353 - chr3R 27807500 intron CG34353 - chr3R 27807552 intron CG34353 - chr3R_8_27805001 chr3R_27805001 RAL-325 968 chr3R 27856765 27856790 chr3R 27858247 27858270 hopper2 4 1482 3.5 1.5 2.5 1.1 1505 chr3R 27856765 intron CG34353 - chr3R 27857518 intron CG34353 - chr3R 27858270 intron CG34353 - chr3R_4_27855001 chr3R_27855001 RAL-325 969 chr3R 27871053 27871087 chr3R 27871154 27871182 9 99 2.0 1.5 1.8 3.2 129 chr3R 27871053 intron CG34353 - chr3R 27871118 intron CG34353 - chr3R 27871182 intron CG34353 - chr3R_9_27870001 chr3R_27870001 RAL-325 970 chr3R 27894938 27894961 chr3R 27895040 27895062 8 101 2.0 2.5 2.2 2.5 124 chr3R 27894938 intron CG34353 - chr3R 27895000 intron CG34353 - chr3R 27895062 intron CG34353 - chr3R_8_27895001 chr3R_27895001 RAL-325 971 chr3R 28062856 28062885 chr3R 28062933 28062948 5 68 0.5 3.0 1.8 1.8 92 chr3R 28062856 intron CG34362 + chr3R 28062902 intron CG34362 + chr3R 28062948 intron CG34362 + chr3R_5_28060001 chr3R_28060001 RAL-325 972 chr3R 28068491 28068531 chr3R 28073932 28073960 I-element 6 5435 2.0 1.0 1.5 2.4 5469 chr3R 28068491 intron CG34362 + chr3R 28071226 intron CG34362 + chr3R 28073960 intron CG34362 + chr3R_6_28070001 chr3R_28070001 RAL-325 973 chr3R 28173671 28173686 chr3R 28181101 28181116 mdg1 4 7430 4.0 3.0 3.5 0.9 7445 chr3R 28173671 intron CG34354 + chr3R 28177394 intron CG34354 + chr3R 28181116 intron CG34354 + chr3R_4_28175001 chr3R_28175001 RAL-325 974 chr3R 28223261 28223283 chr3R 28223343 28223368 4 84 1.5 1.0 1.2 1.8 107 chr3R 28223261 intron CG34354 + chr3R 28223314 intron CG34354 + chr3R 28223368 intron CG34354 + chr3R_4_28220001 chr3R_28220001 RAL-325 975 chr3R 28298690 28298701 chr3R 28298901 28298912 5 210 3.5 4.5 4.0 1.0 222 chr3R 28298690 intergenic not near genes chr3R 28298801 intergenic not near genes chr3R 28298912 intergenic not near genes chr3R_5_28295001 chr3R_28295001 RAL-325 976 chr3R 28380816 28380825 chr3R 28381026 28381058 4 226 3.0 1.5 2.2 1.2 242 chr3R 28380816 intergenic not near genes chr3R 28380937 intergenic not near genes chr3R 28381058 intergenic not near genes chr3R_4_28380001 chr3R_28380001 RAL-325 977 chr3R 28384376 28384399 chr3R 28384509 28384531 8 131 4.0 2.5 3.2 1.9 155 chr3R 28384376 intergenic not near genes chr3R 28384454 intergenic not near genes chr3R 28384531 intergenic not near genes chr3R_8_28380001 chr3R_28380001 RAL-325 978 chr3R 28390979 28390996 chr3R 28391457 28391463 5 477 4.0 1.0 2.5 1.4 484 chr3R 28390979 intergenic not near genes chr3R 28391221 intergenic not near genes chr3R 28391463 intergenic not near genes chr3R_5_28390001 chr3R_28390001 RAL-325 979 chr3R 28393697 28393707 chr3R 28393797 28393807 4 98 4.0 2.0 3.0 1.0 110 chr3R 28393697 intergenic not near genes chr3R 28393752 intergenic not near genes chr3R 28393807 intergenic not near genes chr3R_4_28390001 chr3R_28390001 RAL-325 980 chr3R 28425197 28425220 chr3R 28425264 28425281 7 65 2.0 1.5 1.8 2.5 84 chr3R 28425197 intron beat-VI + chr3R 28425239 intron beat-VI + chr3R 28425281 intron beat-VI + chr3R_7_28425001 chr3R_28425001 RAL-325 981 chr3R 28594120 28594128 chr3R 28594183 28594202 4 74 1.0 1.5 1.2 1.8 82 chr3R 28594120 5` UTR CR43440 + chr3R 28594161 5` UTR CR43440 + chr3R 28594202 5` UTR CR43440 + chr3R_4_28590001 chr3R_28590001 RAL-325 982 chr3R 28616479 28616495 chr3R 28616573 28616587 4 93 2.5 5.0 3.8 0.8 108 chr3R 28616479 intron CG10011 - chr3R 28616533 intron CG10011 - chr3R 28616587 intron CG10011 - chr3R_4_28615001 chr3R_28615001 RAL-325 983 chr3R 28758285 28758303 chr3R 28763901 28763920 roo 4 5616 4.5 0.0 2.2 1.2 5635 chr3R 28758285 intergenic aqrs - chr3R 28761102 intergenic not near genes chr3R 28763920 intergenic not near genes chr3R_4_28760001 chr3R_28760001 RAL-325 984 chr3R 28763900 28763920 chr3R 28771343 28771362 Stalker4 4 7442 0.0 5.0 2.5 1.1 7462 chr3R 28763900 intergenic not near genes chr3R 28767631 intergenic not near genes chr3R 28771362 intergenic not near genes chr3R_4_28765001 chr3R_28765001 RAL-325 985 chr3R 28830907 28830923 chr3R 28830984 28831000 4 77 2.5 4.0 3.2 1.0 93 chr3R 28830907 intron WASp - chr3R 28830954 intron WASp - chr3R 28831000 intron WASp - chr3R_4_28830001 chr3R_28830001 RAL-325 986 chr3R 21907534 21907536 chr3R 28831799 28831802 68 6924267 17.5 18.0 17.8 3.6 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_68_25365001 chr3R_25365001 RAL-325 987 chr3R 29032746 29032778 chr3R 29032823 29032850 10 73 2.5 1.5 2.0 3.3 104 chr3R 29032746 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R 29032798 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R 29032850 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R_10_29030001 chr3R_29030001 RAL-325 988 chr3R 29053738 29053758 chr3R 29054248 29054268 4 510 2.0 1.5 1.8 1.4 530 chr3R 29053738 exon CG11842 + chr3R 29054003 intergenic CG11842 +,CG11843 + chr3R 29054268 intergenic CG11843 +,CG11842 + chr3R_4_29050001 chr3R_29050001 RAL-325 989 chr3R 29126139 29126165 chr3R 29127423 29127458 12 1287 25.0 30.5 27.8 0.4 1319 chr3R 29126139 exon CG11880 + chr3R 29126798 exon CG11880 + chr3R 29127458 exon CG11880 + chr3R_12_29125001 chr3R_29125001 RAL-325 990 chr3R 29213064 29213092 chr3R 29213147 29213160 8 79 1.5 4.0 2.8 2.1 96 chr3R 29213064 intergenic not near genes chr3R 29213112 intergenic not near genes chr3R 29213160 intergenic not near genes chr3R_8_29210001 chr3R_29210001 RAL-325 991 chr3R 29237264 29237283 chr3R 29239269 29239284 5 2012 2.0 2.5 2.2 1.6 2020 chr3R 29237264 exon CG11951 - chr3R 29238274 intron CG11951 - chr3R 29239284 exon CG31427 - chr3R_5_29235001 chr3R_29235001 RAL-325 992 chr3R 29256265 29256300 chr3R 29256344 29256372 10 74 4.5 4.0 4.2 1.9 107 chr3R 29256265 intergenic CG45544 +,stg - chr3R 29256318 intergenic CG45544 + chr3R 29256372 intergenic CG45544 + chr3R_10_29255001 chr3R_29255001 RAL-325 993 chr3R 29319823 29319862 chr3R 29320142 29320154 jockey 5 313 1.5 5.5 3.5 1.1 331 chr3R 29319823 intergenic Cnx99A - chr3R 29319988 intergenic Cnx99A - chr3R 29320154 intergenic not near genes chr3R_5_29315001 chr3R_29315001 RAL-325 994 chr3R 29332287 29332308 chr3R 29332363 29332384 6 77 2.0 2.0 2.0 2.0 97 chr3R 29332287 intergenic not near genes chr3R 29332336 intergenic not near genes chr3R 29332384 intergenic not near genes chr3R_6_29330001 chr3R_29330001 RAL-325 995 chr3R 29406617 29406641 chr3R 29407902 29407927 jockey 8 1283 4.0 2.0 3.0 2.0 1310 chr3R 29406617 intron Ptp99A + chr3R 29407272 intron Ptp99A + chr3R 29407927 intron Ptp99A + chr3R_8_29405001 chr3R_29405001 RAL-325 996 chr3R 29415611 29415615 chr3R 29415776 29415783 4 166 18.5 18.5 18.5 0.2 172 chr3R 29415611 intron Ptp99A + chr3R 29415697 intron Ptp99A + chr3R 29415783 intron Ptp99A + chr3R_4_29415001 chr3R_29415001 RAL-325 997 chr3R 29415610 29415637 chr3R 29415790 29415805 5 173 20.5 19.5 20.0 0.2 195 chr3R 29415610 intron Ptp99A + chr3R 29415708 intron Ptp99A + chr3R 29415805 intron Ptp99A + chr3R_5_29415001 chr3R_29415001 RAL-325 998 chr3R 29433433 29433459 chr3R 29433509 29433537 6 77 1.5 6.0 3.8 1.2 104 chr3R 29433433 intron Ptp99A + chr3R 29433485 intron Ptp99A + chr3R 29433537 intron Ptp99A + chr3R_6_29430001 chr3R_29430001 RAL-325 999 chr3R 29518306 29518332 chr3R 29518385 29518407 11 75 2.5 3.0 2.8 2.9 101 chr3R 29518306 intergenic not near genes chr3R 29518356 intergenic not near genes chr3R 29518407 intergenic not near genes chr3R_11_29515001 chr3R_29515001 RAL-325 1000 chr3R 29539436 29539452 chr3R 29539512 29539528 5 74 1.5 0.5 1.0 2.5 92 chr3R 29539436 intergenic not near genes chr3R 29539482 intergenic not near genes chr3R 29539528 intergenic not near genes chr3R_5_29535001 chr3R_29535001 RAL-325 1001 chr3R 29576744 29576749 chr3R 29576850 29576856 4 106 1.5 0.0 0.8 2.2 112 chr3R 29576744 intergenic not near genes chr3R 29576800 intergenic not near genes chr3R 29576856 intergenic not near genes chr3R_4_29575001 chr3R_29575001 RAL-325 1002 chr3R 29590375 29590389 chr3R 29590467 29590482 9 92 5.5 4.5 5.0 1.5 107 chr3R 29590375 intron CG31041 - chr3R 29590428 intron CG31041 - chr3R 29590482 intron CG31041 - chr3R_9_29590001 chr3R_29590001 RAL-325 1003 chr3R 29627697 29627713 chr3R 29627796 29627805 4 98 1.0 2.0 1.5 1.6 108 chr3R 29627697 intergenic not near genes chr3R 29627751 intergenic not near genes chr3R 29627805 intergenic not near genes chr3R_4_29625001 chr3R_29625001 RAL-325 1004 chr3R 29738269 29738300 chr3R 29739732 29739755 hobo 7 1462 5.0 2.0 3.5 1.6 1486 chr3R 29738269 intergenic CG1969 +,CG7598 + chr3R 29739012 intron CG1969 + chr3R 29739755 5` UTR CG1969 + chr3R_7_29735001 chr3R_29735001 RAL-325 1005 chr3R 29950581 29950596 chr3R 29950657 29950661 5 70 1.5 3.0 2.2 1.6 80 chr3R 29950581 intergenic TkR99D - chr3R 29950621 intergenic TkR99D - chr3R 29950661 intergenic TkR99D - chr3R_5_29950001 chr3R_29950001 RAL-325 1006 chr3R 30013679 30013707 chr3R 30013761 30013789 4 82 0.5 4.0 2.2 1.2 110 chr3R 30013679 intron CG7920 - chr3R 30013734 intron CG7920 - chr3R 30013789 intron CG7920 - chr3R_4_30010001 chr3R_30010001 RAL-325 1007 chr3R 30032177 30032179 chr3R 30032244 30032257 4 75 4.0 4.5 4.2 0.8 80 chr3R 30032177 intron Axn + chr3R 30032217 intron Axn + chr3R 30032257 intron Axn + chr3R_4_30030001 chr3R_30030001 RAL-325 1008 chr3R 30077918 30077931 chr3R 30078005 30078018 4 85 1.0 1.5 1.2 1.8 100 chr3R 30077918 intron sima + chr3R 30077968 intron sima + chr3R 30078018 intron sima + chr3R_4_30075001 chr3R_30075001 RAL-325 1009 chr3R 30182763 30182787 chr3R 30182897 30182922 5 135 2.5 2.0 2.2 1.6 159 chr3R 30182763 intergenic not near genes chr3R 30182842 intergenic not near genes chr3R 30182922 intergenic not near genes chr3R_5_30180001 chr3R_30180001 RAL-325 1010 chr3R 30264474 30264503 chr3R 30264660 30264688 5 185 1.0 0.5 0.8 2.8 214 chr3R 30264474 intergenic not near genes chr3R 30264581 intergenic not near genes chr3R 30264688 intergenic not near genes chr3R_5_30260001 chr3R_30260001 RAL-325 1011 chr3R 30268418 30268439 chr3R 30268498 30268520 8 80 5.5 3.5 4.5 1.5 102 chr3R 30268418 intergenic not near genes chr3R 30268469 intergenic not near genes chr3R 30268520 intergenic not near genes chr3R_8_30265001 chr3R_30265001 RAL-325 1012 chr3R 30317327 30317355 chr3R 30324919 30324947 roo 6 7592 0.5 0.5 0.5 4.0 7620 chr3R 30317327 intron hdc + chr3R 30321137 intron hdc + chr3R 30324947 intron hdc + chr3R_6_30320001 chr3R_30320001 RAL-325 1013 chr3R 30396225 30396250 chr3R 30404489 30404494 roo 5 8260 1.0 5.0 3.0 1.2 8269 chr3R 30396225 intergenic not near genes chr3R 30400360 intergenic not near genes chr3R 30404494 5` UTR CR45570 + chr3R_5_30400001 chr3R_30400001 RAL-325 1014 chr3R 30445508 30445543 chr3R 30445598 30445635 9 92 1.5 0.5 1.0 4.5 127 chr3R 30445508 intergenic aralar1 -,Osi23 - chr3R 30445572 intergenic aralar1 - chr3R 30445635 3` UTR aralar1 - chr3R_9_30445001 chr3R_30445001 RAL-325 1015 chr3R 30456389 30456414 chr3R 30456469 30456494 6 78 0.5 2.0 1.2 2.7 105 chr3R 30456389 intergenic CG2224 - chr3R 30456442 3` UTR CG2224 - chr3R 30456494 3` UTR CG2224 - chr3R_6_30455001 chr3R_30455001 RAL-325 1016 chr3R 30480473 30480510 chr3R 30482941 30482974 jockey 10 2463 1.5 2.5 2.0 3.3 2501 chr3R 30480473 intron PH4alphaEFB + chr3R 30481724 intron PH4alphaEFB + chr3R 30482974 intron PH4alphaEFB + chr3R_10_30480001 chr3R_30480001 RAL-325 1017 chr3R 30549019 30549038 chr3R 30549110 30549129 5 91 1.5 3.5 2.5 1.4 110 chr3R 30549019 intron tmod + chr3R 30549074 intron tmod + chr3R 30549129 intron tmod + chr3R_5_30545001 chr3R_30545001 RAL-325 1018 chr3R 30571699 30571714 chr3R 30571779 30571794 5 80 3.0 1.5 2.2 1.6 95 chr3R 30571699 intron tmod + chr3R 30571746 intron tmod + chr3R 30571794 intron tmod + chr3R_5_30570001 chr3R_30570001 RAL-325 1019 chr3R 30679540 30679552 chr3R 30686999 30687020 blood 4 7465 0.5 3.0 1.8 1.4 7480 chr3R 30679540 intergenic not near genes chr3R 30683280 intergenic not near genes chr3R 30687020 intergenic not near genes chr3R_4_30680001 chr3R_30680001 RAL-325 1020 chr3R 30690173 30690190 chr3R 30690245 30690274 7 78 3.0 3.0 3.0 1.8 101 chr3R 30690173 intergenic Spn100A + chr3R 30690224 intergenic Spn100A + chr3R 30690274 intergenic Spn100A + chr3R_7_30690001 chr3R_30690001 RAL-325 1021 chr3R 30818811 30818839 chr3R 30820375 30820404 1360 4 1565 0.5 1.5 1.0 2.0 1593 chr3R 30818811 intron cindr + chr3R 30819608 intron cindr + chr3R 30820404 intron cindr + chr3R_4_30815001 chr3R_30815001 RAL-325 1022 chr3R 30900528 30900550 chr3R 30900599 30900630 4 76 8.0 3.0 5.5 0.6 102 chr3R 30900528 3` UTR Cyp4c3 + chr3R 30900579 3` UTR Cyp4c3 + chr3R 30900630 3` UTR Cyp4c3 + chr3R_4_30900001 chr3R_30900001 RAL-325 1023 chr3R 30996637 30996656 chr3R 30996858 30996873 5 222 1.0 0.0 0.5 3.3 236 chr3R 30996637 intron 5-HT7 - chr3R 30996755 intron 5-HT7 - chr3R 30996873 intron 5-HT7 - chr3R_5_30995001 chr3R_30995001 RAL-325 1024 chr3R 31000303 31000309 chr3R 31000398 31000424 8 109 2.5 5.0 3.8 1.7 121 chr3R 31000303 intron 5-HT7 - chr3R 31000364 intron 5-HT7 - chr3R 31000424 intron 5-HT7 - chr3R_8_31000001 chr3R_31000001 RAL-325 1025 chr3R 31137154 31137181 chr3R 31137234 31137261 9 78 0.5 1.5 1.0 4.5 107 chr3R 31137154 intron Gycbeta100B + chr3R 31137208 intron Gycbeta100B + chr3R 31137261 intron Gycbeta100B + chr3R_9_31135001 chr3R_31135001 RAL-325 1026 chr3R 31245772 31245781 chr3R 31245859 31245868 4 86 8.5 3.0 5.8 0.6 96 chr3R 31245772 intron qless - chr3R 31245820 intron qless - chr3R 31245868 intron qless - chr3R_4_31245001 chr3R_31245001 RAL-325 1027 chr3R 31279382 31279407 chr3R 31285563 31285597 diver 7 6185 3.5 1.5 2.5 2.0 6215 chr3R 31279382 intergenic not near genes chr3R 31282490 intergenic not near genes chr3R 31285597 intergenic not near genes chr3R_7_31280001 chr3R_31280001 RAL-325 1028 chr3R 31320170 31320194 chr3R 31320263 31320274 8 91 0.5 5.0 2.8 2.1 104 chr3R 31320170 intron CG34347 + chr3R 31320222 intron CG34347 + chr3R 31320274 intron CG34347 + chr3R_8_31320001 chr3R_31320001 RAL-325 1029 chr3R 31413093 31413119 chr3R 31418293 31418307 copia 9 5197 4.5 1.0 2.8 2.4 5214 chr3R 31413093 intron Gprk2 + chr3R 31415700 intron Gprk2 + chr3R 31418307 intron Gprk2 + chr3R_9_31415001 chr3R_31415001 RAL-325 1030 chr3R 31426881 31426912 chr3R 31426972 31427004 6 90 0.5 1.5 1.0 3.0 123 chr3R 31426881 intron Gprk2 + chr3R 31426942 intron Gprk2 + chr3R 31427004 intron Gprk2 + chr3R_6_31425001 chr3R_31425001 RAL-325 1031 chr3R 31430720 31430744 chr3R 31430807 31430828 6 86 2.0 3.0 2.5 1.7 108 chr3R 31430720 intron Gprk2 + chr3R 31430774 intron Gprk2 + chr3R 31430828 intron Gprk2 + chr3R_6_31430001 chr3R_31430001 RAL-325 1032 chr3R 31435361 31435384 chr3R 31435513 31435535 11 149 5.0 2.0 3.5 2.4 174 chr3R 31435361 intron Gprk2 + chr3R 31435448 intron Gprk2 + chr3R 31435535 intron Gprk2 + chr3R_11_31435001 chr3R_31435001 RAL-325 1033 chr3R 31453223 31453250 chr3R 31453301 31453325 16 76 3.0 3.5 3.2 3.8 102 chr3R 31453223 intron Gprk2 + chr3R 31453274 intron Gprk2 + chr3R 31453325 exon Gprk2 + chr3R_16_31450001 chr3R_31450001 RAL-325 1034 chr3R 31501331 31501342 chr3R 31501457 31501471 4 128 4.0 1.5 2.8 1.1 140 chr3R 31501331 intron mey + chr3R 31501401 intron mey + chr3R 31501471 intron mey + chr3R_4_31500001 chr3R_31500001 RAL-325 1035 chr3R 31563034 31563059 chr3R 31563113 31563139 10 79 5.0 1.5 3.2 2.4 105 chr3R 31563034 intron nyo + chr3R 31563086 intron nyo + chr3R 31563139 intron nyo + chr3R_10_31560001 chr3R_31560001 RAL-325 1036 chr3R 31639989 31639995 chr3R 31640070 31640079 4 83 4.5 3.5 4.0 0.8 90 chr3R 31639989 intron kek6 + chr3R 31640034 intron kek6 + chr3R 31640079 intron kek6 + chr3R_4_31640001 chr3R_31640001 RAL-325 1037 chr3R 31691531 31691561 chr3R 31696297 31696327 Doc 10 4763 1.0 2.5 1.8 3.6 4796 chr3R 31691531 intergenic not near genes chr3R 31693929 intergenic not near genes chr3R 31696327 intergenic not near genes chr3R_10_31690001 chr3R_31690001 RAL-325 1038 chr3R 31860274 31860303 chr3R 31860354 31860358 7 76 1.0 4.0 2.5 2.0 84 chr3R 31860274 intron heph - chr3R 31860316 intron heph - chr3R 31860358 intron heph - chr3R_7_31860001 chr3R_31860001 RAL-325 1039 chrX 551423 551454 chrX 558985 559008 412 8 7558 5.5 3.5 4.5 1.5 7585 chrX 551423 intron Appl + chrX 555216 intron Appl + chrX 559008 intron Appl + chrX_8_555001 chrX_555001 RAL-325 1040 chrX 827605 827635 chrX 835392 835409 roo 4 7783 3.0 0.5 1.8 1.4 7804 chrX 827605 intron CG43867 - chrX 831507 intron CG43867 - chrX 835409 intron CG43867 - chrX_4_830001 chrX_830001 RAL-325 1041 chrX 906709 906734 chrX 908493 908509 S-element 4 1784 1.5 4.5 3.0 1.0 1800 chrX 906709 intron CG43867 - chrX 907609 intron CG43867 - chrX 908509 intron CG43867 - chrX_4_905001 chrX_905001 RAL-325 1042 chrX 1053117 1053120 chrX 16983076 16983077 8 15929958 14.0 1.0 7.5 0.9 15929960 chrX 1053117 intron CR44779 + chrX 9018097 intron,intron rdgA +,CR43836 - chrX 16983077 intron CG45002 - chrX_8_9015001 chrX_9015001 RAL-325 1043 chrX 1153197 1153212 chrX 1153272 1153295 4 79 2.0 3.5 2.8 1.1 98 chrX 1153197 intergenic not near genes chrX 1153246 intergenic not near genes chrX 1153295 intergenic not near genes chrX_4_1150001 chrX_1150001 RAL-325 1044 chrX 1163305 1163319 chrX 1163383 1163395 5 76 1.5 2.5 2.0 1.7 90 chrX 1163305 intergenic CG34320 - chrX 1163350 intergenic CG34320 - chrX 1163395 intergenic CG34320 - chrX_5_1160001 chrX_1160001 RAL-325 1045 chrX 1185558 1185595 chrX 1185637 1185674 8 78 1.0 3.5 2.2 2.5 116 chrX 1185558 intron CG14626 + chrX 1185616 intron CG14626 + chrX 1185674 intron CG14626 + chrX_8_1185001 chrX_1185001 RAL-325 1046 chrX 1428595 1428625 chrX 1428681 1428705 8 84 1.5 6.0 3.8 1.7 110 chrX 1428595 intron futsch + chrX 1428650 intron futsch + chrX 1428705 intron futsch + chrX_8_1425001 chrX_1425001 RAL-325 1047 chrX 1518039 1518072 chrX 1523438 1523462 jockey 5 5397 1.5 3.0 2.2 1.6 5423 chrX 1518039 intergenic inc + chrX 1520750 intergenic not near genes chrX 1523462 intergenic not near genes chrX_5_1520001 chrX_1520001 RAL-325 1048 chrX 1554509 1554536 chrX 1554666 1554668 5 149 20.0 12.0 16.0 0.3 159 chrX 1554509 exon Mur2B - chrX 1554588 intron Mur2B - chrX 1554668 exon Mur2B - chrX_5_1550001 chrX_1550001 RAL-325 1049 chrX 1627979 1628002 chrX 1635447 1635464 gtwin 7 7465 3.5 4.0 3.8 1.5 7485 chrX 1627979 intron,intron Mur2B -,br + chrX 1631722 intron,intron Mur2B -,br + chrX 1635464 intron,intron Mur2B -,br + chrX_7_1630001 chrX_1630001 RAL-325 1050 chrX 1954889 1954916 chrX 1962824 1962839 Stalker2 5 7933 4.0 1.0 2.5 1.4 7950 chrX 1954889 intron Hr4 + chrX 1958864 intron Hr4 + chrX 1962839 intron Hr4 + chrX_5_1955001 chrX_1955001 RAL-325 1051 chrX 2045032 2045040 chrX 2045090 2045115 4 71 2.0 1.0 1.5 1.6 83 chrX 2045032 intron,3` UTR CG4313 +,moody - chrX 2045074 intron,3` UTR CG4313 +,moody - chrX 2045115 intron,3` UTR CG4313 +,moody - chrX_4_2045001 chrX_2045001 RAL-325 1052 chrX 2146658 2146688 chrX 2146749 2146766 4 86 2.5 1.5 2.0 1.3 108 chrX 2146658 intron Pgd + chrX 2146712 intron Pgd + chrX 2146766 intron Pgd + chrX_4_2145001 chrX_2145001 RAL-325 1053 chrX 2385738 2385757 chrX 2385816 2385835 6 78 3.5 3.0 3.2 1.4 97 chrX 2385738 intron PsGEF - chrX 2385786 intron PsGEF - chrX 2385835 intron PsGEF - chrX_6_2385001 chrX_2385001 RAL-325 1054 chrX 2399836 2399871 chrX 2408188 2408207 roo 5 8342 2.5 1.5 2.0 1.7 8371 chrX 2399836 intergenic not near genes chrX 2404022 intergenic not near genes chrX 2408207 intergenic not near genes chrX_5_2400001 chrX_2400001 RAL-325 1055 chrX 2578810 2578841 chrX 2578902 2578931 9 89 2.0 3.5 2.8 2.4 121 chrX 2578810 intergenic Pdfr +,Vha36-3 - chrX 2578870 intergenic Vha36-3 -,Pdfr + chrX 2578931 intergenic Vha36-3 -,Pdfr + chrX_9_2575001 chrX_2575001 RAL-325 1056 chrX 2803499 2803529 chrX 2803637 2803667 11 137 3.0 2.0 2.5 3.1 168 chrX 2803499 intron kirre + chrX 2803583 intron kirre + chrX 2803667 intron kirre + chrX_11_2800001 chrX_2800001 RAL-325 1057 chrX 2844899 2844932 chrX 2852309 2852342 mdg1 4 7409 2.0 2.0 2.0 1.3 7443 chrX 2844899 intron kirre + chrX 2848620 intron kirre + chrX 2852342 intron kirre + chrX_4_2845001 chrX_2845001 RAL-325 1058 chrX 2888119 2888138 chrX 2888190 2888203 8 74 6.0 1.5 3.8 1.7 84 chrX 2888119 intron kirre + chrX 2888161 intron kirre + chrX 2888203 intron kirre + chrX_8_2885001 chrX_2885001 RAL-325 1059 chrX 3408990 3409018 chrX 3409061 3409095 5 76 0.0 0.5 0.2 4.2 105 chrX 3408990 intron,intron CR44999 +,CG12535 - chrX 3409042 intron,intron CR44999 +,CG12535 - chrX 3409095 intron,intron CR44999 +,CG12535 - chrX_5_3405001 chrX_3405001 RAL-325 1060 chrX 3493092 3493123 chrX 3502251 3502262 roo 4 9153 3.5 0.5 2.0 1.3 9170 chrX 3493092 intron,intron CR44999 +,Gas8 - chrX 3497677 intron,intron CR44999 +,Gas8 - chrX 3502262 intron,intron CR44999 +,Gas8 - chrX_4_3495001 chrX_3495001 RAL-325 1061 chrX 3535407 3535418 chrX 3535497 3535508 4 90 3.5 2.0 2.8 1.1 101 chrX 3535407 intron CG32791 - chrX 3535458 intron CG32791 - chrX 3535508 intron CG32791 - chrX_4_3535001 chrX_3535001 RAL-325 1062 chrX 3657417 3657445 chrX 3657493 3657507 5 73 0.5 0.5 0.5 3.3 90 chrX 3657417 intron AstA-R1 + chrX 3657462 intron AstA-R1 + chrX 3657507 intron AstA-R1 + chrX_5_3655001 chrX_3655001 RAL-325 1063 chrX 3842330 3842349 chrX 3842570 3842589 pogo 7 240 2.5 1.0 1.8 2.5 259 chrX 3842330 intron ec + chrX 3842460 intron ec + chrX 3842589 intron ec + chrX_7_3840001 chrX_3840001 RAL-325 1064 chrX 3866108 3866132 chrX 3866186 3866210 5 76 0.5 1.0 0.8 2.8 102 chrX 3866108 intron yin - chrX 3866159 intron yin - chrX 3866210 intron yin - chrX_5_3865001 chrX_3865001 RAL-325 1065 chrX 3881277 3881302 chrX 3881415 3881441 9 139 2.5 1.5 2.0 3.0 164 chrX 3881277 intron VhaAC39-1 + chrX 3881359 intron VhaAC39-1 + chrX 3881441 intron VhaAC39-1 + chrX_9_3880001 chrX_3880001 RAL-325 1066 chrX 3890669 3890684 chrX 3890987 3891005 6 323 2.0 2.5 2.2 1.9 336 chrX 3890669 intergenic CG15239 + chrX 3890837 intergenic CG15239 + chrX 3891005 intergenic CG42541 - chrX_6_3890001 chrX_3890001 RAL-325 1067 chrX 3986872 3986889 chrX 3994494 3994522 412 4 7630 1.0 0.0 0.5 2.7 7650 chrX 3986872 intergenic not near genes chrX 3990697 intergenic not near genes chrX 3994522 intergenic not near genes chrX_4_3990001 chrX_3990001 RAL-325 1068 chrX 4065858 4065876 chrX 4065943 4065960 5 83 1.0 0.0 0.5 3.3 102 chrX 4065858 intergenic not near genes chrX 4065909 intergenic not near genes chrX 4065960 intergenic not near genes chrX_5_4065001 chrX_4065001 RAL-325 1069 chrX 4157907 4157922 chrX 4164949 4164974 297 4 7048 1.0 1.0 1.0 2.0 7067 chrX 4157907 intron Fas2 - chrX 4161440 intron Fas2 - chrX 4164974 intron Fas2 - chrX_4_4160001 chrX_4160001 RAL-325 1070 chrX 4396976 4397006 chrX 4397061 4397087 8 80 2.0 1.0 1.5 3.2 111 chrX 4396976 intron CR32773 - chrX 4397032 intron CR32773 - chrX 4397087 intron CR32773 - chrX_8_4395001 chrX_4395001 RAL-325 1071 chrX 4827980 4828001 chrX 4835351 4835351 Stalker4 4 7362 3.0 3.5 3.2 1.0 7371 chrX 4827980 intergenic not near genes chrX 4831666 intergenic not near genes chrX 4835351 intergenic not near genes chrX_4_4830001 chrX_4830001 RAL-325 1072 chrX 4987243 4987275 chrX 4987322 4987354 4 78 1.0 0.0 0.5 2.7 111 chrX 4987243 intron CR44833 - chrX 4987298 intron CR44833 - chrX 4987354 intron CR44833 - chrX_4_4985001 chrX_4985001 RAL-325 1073 chrX 5096293 5096306 chrX 5103858 5103871 springer 5 7565 1.0 3.5 2.2 1.6 7578 chrX 5096293 intron,intron CG15465 +,rg + chrX 5100082 intron,intron CG15465 +,rg + chrX 5103871 intron,intron CG15465 +,rg + chrX_5_5100001 chrX_5100001 RAL-325 1074 chrX 5345406 5345426 chrX 5345516 5345537 4 111 2.0 1.0 1.5 1.6 131 chrX 5345406 intron SK + chrX 5345472 intron SK + chrX 5345537 intron SK + chrX_4_5345001 chrX_5345001 RAL-325 1075 chrX 5473591 5473616 chrX 5473666 5473692 4 74 0.5 1.0 0.8 2.2 101 chrX 5473591 intron SPR + chrX 5473642 intron SPR + chrX 5473692 intron SPR + chrX_4_5470001 chrX_5470001 RAL-325 1076 chrX 5512055 5512079 chrX 5512137 5512144 5 77 3.5 0.0 1.8 1.8 89 chrX 5512055 intergenic not near genes chrX 5512100 intergenic not near genes chrX 5512144 intergenic not near genes chrX_5_5510001 chrX_5510001 RAL-325 1077 chrX 5718175 5718204 chrX 5718251 5718279 7 75 3.0 2.5 2.8 1.8 104 chrX 5718175 intergenic CG33080 - chrX 5718227 intergenic CG33080 - chrX 5718279 intergenic not near genes chrX_7_5715001 chrX_5715001 RAL-325 1078 chrX 5789306 5789327 chrX 5789379 5789386 6 72 1.0 2.0 1.5 2.4 80 chrX 5789306 3` UTR CG42699 + chrX 5789346 3` UTR CG42699 + chrX 5789386 3` UTR CG42699 + chrX_6_5785001 chrX_5785001 RAL-325 1079 chrX 5796932 5796943 chrX 5796989 5797012 4 71 3.0 2.0 2.5 1.1 80 chrX 5796932 intergenic not near genes chrX 5796972 intergenic not near genes chrX 5797012 intergenic not near genes chrX_4_5795001 chrX_5795001 RAL-325 1080 chrX 5883814 5883837 chrX 5884053 5884074 pogo 4 239 1.0 1.5 1.2 1.8 260 chrX 5883814 intron CR45668 - chrX 5883944 intron CR45668 - chrX 5884074 intron CR45668 - chrX_4_5880001 chrX_5880001 RAL-325 1081 chrX 5884164 5884189 chrX 5884405 5884430 pogo 5 239 1.0 1.0 1.0 2.5 266 chrX 5884164 intron CR45668 - chrX 5884297 intron CR45668 - chrX 5884430 intron CR45668 - chrX_5_5880001 chrX_5880001 RAL-325 1082 chrX 5974863 5974890 chrX 5974955 5974980 5 89 1.5 2.5 2.0 1.7 117 chrX 5974863 intron Grip + chrX 5974922 intron Grip + chrX 5974980 intron Grip + chrX_5_5970001 chrX_5970001 RAL-325 1083 chrX 6071138 6071162 chrX 6071352 6071375 5 213 2.0 2.5 2.2 1.6 237 chrX 6071138 intron Tsp5D - chrX 6071256 intron Tsp5D - chrX 6071375 intron Tsp5D - chrX_5_6070001 chrX_6070001 RAL-325 1084 chrX 6215346 6215370 chrX 6215429 6215453 7 82 2.5 1.0 1.8 2.5 107 chrX 6215346 intergenic not near genes chrX 6215400 intergenic not near genes chrX 6215453 intergenic not near genes chrX_7_6215001 chrX_6215001 RAL-325 1085 chrX 6335223 6335242 chrX 6337732 6337751 Tirant 4 2510 0.0 2.5 1.2 1.8 2528 chrX 6335223 intergenic not near genes chrX 6336487 intergenic not near genes chrX 6337751 intergenic CG3842 + chrX_4_6335001 chrX_6335001 RAL-325 1086 chrX 6392882 6392904 chrX 6397631 6397667 Doc 11 4760 1.0 2.0 1.5 4.4 4785 chrX 6392882 intergenic not near genes chrX 6395274 intergenic not near genes chrX 6397667 intergenic not near genes chrX_11_6395001 chrX_6395001 RAL-325 1087 chrX 6562822 6562851 chrX 6571298 6571315 Tirant 14 8474 3.0 3.5 3.2 3.3 8493 chrX 6562822 intron CG34417 + chrX 6567068 intron CG34417 + chrX 6571315 intron CG34417 + chrX_14_6565001 chrX_6565001 RAL-325 1088 chrX 6989517 6989534 chrX 6989604 6989621 4 87 1.5 0.5 1.0 2.0 104 chrX 6989517 intron ogre - chrX 6989569 intron ogre - chrX 6989621 intron ogre - chrX_4_6985001 chrX_6985001 RAL-325 1089 chrX 7023602 7023633 chrX 7030992 7030998 Tabor 8 7386 1.0 2.0 1.5 3.2 7396 chrX 7023602 intron CG12541 - chrX 7027300 intron CG12541 - chrX 7030998 intron CG12541 - chrX_8_7025001 chrX_7025001 RAL-325 1090 chrX 7125250 7125278 chrX 7134407 7134435 roo 4 9158 0.0 1.0 0.5 2.7 9185 chrX 7125250 intergenic not near genes chrX 7129842 intergenic not near genes chrX 7134435 intergenic not near genes chrX_4_7125001 chrX_7125001 RAL-325 1091 chrX 7253002 7253031 chrX 7253087 7253116 5 85 0.5 2.5 1.5 2.0 114 chrX 7253002 intron CR44357 - chrX 7253059 intron CR44357 - chrX 7253116 intron CR44357 - chrX_5_7250001 chrX_7250001 RAL-325 1092 chrX 7294514 7294536 chrX 7294611 7294634 4 96 1.0 5.0 3.0 1.0 120 chrX 7294514 intron,intron CR44357 -,CG1677 - chrX 7294574 intron,intron CR44357 -,CG1677 - chrX 7294634 intron,intron CR44357 -,CG1677 - chrX_4_7290001 chrX_7290001 RAL-325 1093 chrX 7702905 7702936 chrX 7703343 7703349 jockey 6 434 2.0 1.0 1.5 2.4 444 chrX 7702905 intron CHES-1-like - chrX 7703127 intron CHES-1-like - chrX 7703349 intron CHES-1-like - chrX_6_7700001 chrX_7700001 RAL-325 1094 chrX 7737162 7737183 chrX 7737244 7737264 8 82 1.0 0.5 0.8 4.4 102 chrX 7737162 5` UTR Tom40 + chrX 7737213 intron Tom40 + chrX 7737264 intron Tom40 + chrX_8_7735001 chrX_7735001 RAL-325 1095 chrX 8085572 8085597 chrX 8085658 8085683 4 86 0.0 2.0 1.0 2.0 111 chrX 8085572 intron,5` UTR CG2256 -,CR45535 + chrX 8085628 intron,5` UTR CG2256 -,CR45535 + chrX 8085683 intron,5` UTR CG2256 -,CR45535 + chrX_4_8085001 chrX_8085001 RAL-325 1096 chrX 8163624 8163655 chrX 8163706 8163706 7 76 0.0 2.0 1.0 3.5 82 chrX 8163624 intergenic CR45536 + chrX 8163665 intergenic CR45536 + chrX 8163706 intergenic CR45536 + chrX_7_8160001 chrX_8160001 RAL-325 1097 chrX 8649729 8649747 chrX 8649916 8649934 7 186 2.0 1.5 1.8 2.5 205 chrX 8649729 intron oc - chrX 8649832 intron oc - chrX 8649934 intron oc - chrX_7_8645001 chrX_8645001 RAL-325 1098 chrX 8658706 8658713 chrX 8658801 8658802 4 94 2.0 0.0 1.0 2.0 96 chrX 8658706 intergenic not near genes chrX 8658754 intergenic not near genes chrX 8658802 intergenic not near genes chrX_4_8655001 chrX_8655001 RAL-325 1099 chrX 9337943 9337969 chrX 9338035 9338053 5 87 2.0 3.5 2.8 1.3 110 chrX 9337943 intron CG34449 - chrX 9337998 intron CG34449 - chrX 9338053 exon CG34449 - chrX_5_9335001 chrX_9335001 RAL-325 1100 chrX 9508134 9508166 chrX 9509651 9509684 jockey 7 1518 1.5 0.5 1.0 3.5 1550 chrX 9508134 intron CG32700 - chrX 9508909 intron CG32700 - chrX 9509684 intron CG32700 - chrX_7_9505001 chrX_9505001 RAL-325 1101 chrX 9575800 9575824 chrX 9576114 9576146 mdg3 5 316 4.5 1.5 3.0 1.2 346 chrX 9575800 intron,exon CG32699 -,CG42395 - chrX 9575973 intron,intron CG32699 -,CG42395 - chrX 9576146 intron,5` UTR CG32699 -,CG42395 - chrX_5_9575001 chrX_9575001 RAL-325 1102 chrX 9783052 9783252 chrX 9783130 9783292 4 69 2.5 1.0 1.8 1.4 240 chrX 9783052 intergenic CG32698 + chrX 9783172 intergenic CG32698 + chrX 9783292 5` UTR CG32698 + chrX_4_9780001 chrX_9780001 RAL-325 1103 chrX 9784172 9784205 chrX 9784360 9784393 7 184 3.0 1.5 2.2 2.2 221 chrX 9784172 intron CG32698 + chrX 9784282 intron CG32698 + chrX 9784393 intron CG32698 + chrX_7_9780001 chrX_9780001 RAL-325 1104 chrX 9791874 9791889 chrX 9791970 9791984 5 96 2.0 1.5 1.8 1.8 110 chrX 9791874 intron CG32698 + chrX 9791929 intron CG32698 + chrX 9791984 intron CG32698 + chrX_5_9790001 chrX_9790001 RAL-325 1105 chrX 10138218 10138247 chrX 10145721 10145751 412 5 7504 0.0 1.5 0.8 2.8 7533 chrX 10138218 intron,intron RhoU +,CR44894 - chrX 10141984 intron,intron RhoU +,CR44894 - chrX 10145751 intron,intron RhoU +,CR44894 - chrX_5_10140001 chrX_10140001 RAL-325 1106 chrX 10151258 10151274 chrX 10151338 10151355 4 80 1.5 0.5 1.0 2.0 97 chrX 10151258 intron CR44894 - chrX 10151306 intron CR44894 - chrX 10151355 intron CR44894 - chrX_4_10150001 chrX_10150001 RAL-325 1107 chrX 10772682 10772693 chrX 10772759 10772774 Tirant 4 78 2.5 2.0 2.2 1.2 92 chrX 10772682 intron CG15211 + chrX 10772728 intron CG15211 + chrX 10772774 intron CG15211 + chrX_4_10770001 chrX_10770001 RAL-325 1108 chrX 10960412 10960443 chrX 10960496 10960527 5 84 1.5 1.5 1.5 2.0 115 chrX 10960412 intron Myo10A + chrX 10960470 intron Myo10A + chrX 10960527 intron Myo10A + chrX_5_10960001 chrX_10960001 RAL-325 1109 chrX 11034301 11034322 chrX 11034623 11034651 6 328 0.5 0.5 0.5 4.0 350 chrX 11034301 intron CG42339 - chrX 11034476 intron CG42339 - chrX 11034651 intron CG42339 - chrX_6_11030001 chrX_11030001 RAL-325 1110 chrX 11062455 11062475 chrX 11062549 11062570 5 95 1.0 1.5 1.2 2.3 115 chrX 11062455 exon CG1537 - chrX 11062512 intron CG1537 - chrX 11062570 intron CG1537 - chrX_5_11060001 chrX_11060001 RAL-325 1111 chrX 11096000 11096030 chrX 11103102 11103114 HMS-Beagle 4 7098 1.5 4.5 3.0 1.0 7114 chrX 11096000 intergenic not near genes chrX 11099557 intergenic not near genes chrX 11103114 intron CG42249 + chrX_4_11095001 chrX_11095001 RAL-325 1112 chrX 11205294 11205314 chrX 11205370 11205388 4 76 0.5 1.5 1.0 2.0 94 chrX 11205294 intergenic not near genes chrX 11205341 intergenic not near genes chrX 11205388 intergenic not near genes chrX_4_11205001 chrX_11205001 RAL-325 1113 chrX 11238224 11238238 chrX 11238332 11238347 4 110 1.0 1.0 1.0 2.0 123 chrX 11238224 intron CG44422 - chrX 11238286 intron CG44422 - chrX 11238347 intron CG44422 - chrX_4_11235001 chrX_11235001 RAL-325 1114 chrX 11239717 11239751 chrX 11239815 11239848 11 96 2.5 5.0 3.8 2.3 131 chrX 11239717 intron CG44422 - chrX 11239782 intron CG44422 - chrX 11239848 intron CG44422 - chrX_11_11235001 chrX_11235001 RAL-325 1115 chrX 12043840 12043858 chrX 12043923 12043947 5 86 1.5 0.5 1.0 2.5 107 chrX 12043840 5` UTR,5` UTR CR43960 +,Ten-a + chrX 12043894 5` UTR,5` UTR CR43960 +,Ten-a + chrX 12043947 5` UTR,5` UTR CR43960 +,Ten-a + chrX_5_12040001 chrX_12040001 RAL-325 1116 chrX 12168140 12168166 chrX 12173581 12173593 I-element 4 5438 1.0 3.5 2.2 1.2 5453 chrX 12168140 intron Ten-a + chrX 12170866 intron Ten-a + chrX 12173593 intron Ten-a + chrX_4_12170001 chrX_12170001 RAL-325 1117 chrX 12202778 12202800 chrX 12202862 12202883 8 83 0.0 1.5 0.8 4.4 105 chrX 12202778 intron Ten-a + chrX 12202830 intron Ten-a + chrX 12202883 intron Ten-a + chrX_8_12200001 chrX_12200001 RAL-325 1118 chrX 12301960 12301986 chrX 12303260 12303266 X-element 4 1291 0.5 0.0 0.2 3.3 1306 chrX 12301960 intron Ten-a + chrX 12302613 intron Ten-a + chrX 12303266 intron Ten-a + chrX_4_12300001 chrX_12300001 RAL-325 1119 chrX 12375495 12375500 chrX 12375591 12375598 4 97 4.0 2.0 3.0 1.0 103 chrX 12375495 intergenic Ir11a - chrX 12375546 intergenic Ir11a - chrX 12375598 exon Ir11a - chrX_4_12375001 chrX_12375001 RAL-325 1120 chrX 13172354 13172383 chrX 13172430 13172455 13 73 0.5 1.0 0.8 7.2 101 chrX 13172354 exon CG34411 - chrX 13172404 intron CG34411 - chrX 13172455 intron CG34411 - chrX_13_13170001 chrX_13170001 RAL-325 1121 chrX 13429466 13429490 chrX 13430615 13430638 jockey 9 1146 0.5 1.0 0.8 5.0 1172 chrX 13429466 intergenic not near genes chrX 13430052 intergenic not near genes chrX 13430638 intergenic not near genes chrX_9_13430001 chrX_13430001 RAL-325 1122 chrX 13485700 13485721 chrX 13485790 13485812 4 88 2.5 2.0 2.2 1.2 112 chrX 13485700 intron Neto + chrX 13485756 intron Neto + chrX 13485812 intron Neto + chrX_4_13485001 chrX_13485001 RAL-325 1123 chrX 13507306 13507320 chrX 13507386 13507396 4 80 1.0 3.0 2.0 1.3 90 chrX 13507306 intron Neto + chrX 13507351 intron Neto + chrX 13507396 intron Neto + chrX_4_13505001 chrX_13505001 RAL-325 1124 chrX 13513385 13513405 chrX 13513452 13513459 5 67 2.0 2.0 2.0 1.7 74 chrX 13513385 intron Neto + chrX 13513422 intron Neto + chrX 13513459 intron Neto + chrX_5_13510001 chrX_13510001 RAL-325 1125 chrX 13943292 13943298 chrX 13943364 13943389 4 82 0.0 2.5 1.2 1.8 97 chrX 13943292 intron mamo - chrX 13943340 intron mamo - chrX 13943389 intron mamo - chrX_4_13940001 chrX_13940001 RAL-325 1126 chrX 13975875 13975903 chrX 13975952 13975980 4 77 0.0 2.5 1.2 1.8 105 chrX 13975875 intron mamo - chrX 13975928 intron mamo - chrX 13975980 intron mamo - chrX_4_13975001 chrX_13975001 RAL-325 1127 chrX 14209469 14209489 chrX 14209559 14209577 4 90 1.0 0.0 0.5 2.7 108 chrX 14209469 intron,intron l(1)G0007 +,l(1)G0469 - chrX 14209523 intron,intron l(1)G0007 +,l(1)G0469 - chrX 14209577 intron,intron l(1)G0007 +,l(1)G0469 - chrX_4_14205001 chrX_14205001 RAL-325 1128 chrX 14531358 14531364 chrX 14531447 14531453 4 88 2.0 0.0 1.0 2.0 95 chrX 14531358 intergenic not near genes chrX 14531406 intergenic not near genes chrX 14531453 intergenic not near genes chrX_4_14530001 chrX_14530001 RAL-325 1129 chrX 14813738 14813756 chrX 14813813 14813830 5 76 2.0 1.0 1.5 2.0 92 chrX 14813738 intron rut - chrX 14813784 intron rut - chrX 14813830 intron rut - chrX_5_14810001 chrX_14810001 RAL-325 1130 chrX 14900858 14900871 chrX 14901050 14901062 4 192 1.0 2.5 1.8 1.4 204 chrX 14900858 intron Flo2 + chrX 14900960 intron Flo2 + chrX 14901062 intron Flo2 + chrX_4_14900001 chrX_14900001 RAL-325 1131 chrX 14936857 14936893 chrX 14946114 14946149 roo 9 9253 1.5 3.0 2.2 2.8 9292 chrX 14936857 intron pdgy - chrX 14941503 intron pdgy - chrX 14946149 intron pdgy - chrX_9_14940001 chrX_14940001 RAL-325 1132 chrX 15369847 15369864 chrX 15369930 15369946 6 82 1.0 3.5 2.2 1.9 99 chrX 15369847 intron acj6 - chrX 15369896 intron acj6 - chrX 15369946 intron acj6 - chrX_6_15365001 chrX_15365001 RAL-325 1133 chrX 15413054 15413081 chrX 15417356 15417367 Juan 4 4296 2.0 2.0 2.0 1.3 4313 chrX 15413054 intron Cngl - chrX 15415210 intron Cngl - chrX 15417367 intron Cngl - chrX_4_15415001 chrX_15415001 RAL-325 1134 chrX 15435690 15435699 chrX 15436108 15436132 rover 5 430 0.0 2.0 1.0 2.5 442 chrX 15435690 intron Cngl - chrX 15435911 intron Cngl - chrX 15436132 intron Cngl - chrX_5_15435001 chrX_15435001 RAL-325 1135 chrX 15589436 15589459 chrX 15589615 15589630 6 174 3.0 4.0 3.5 1.3 194 chrX 15589436 intron CG9220 - chrX 15589533 intron CG9220 - chrX 15589630 exon CG9220 - chrX_6_15585001 chrX_15585001 RAL-325 1136 chrX 15749664 15749681 chrX 15749767 15749784 5 102 2.0 1.0 1.5 2.0 120 chrX 15749664 intron CG8239 + chrX 15749724 intron CG8239 + chrX 15749784 intron CG8239 + chrX_5_15745001 chrX_15745001 RAL-325 1137 chrX 16492657 16492676 chrX 16498233 16498253 mdg3 5 5576 2.5 4.0 3.2 1.2 5596 chrX 16492657 intron para - chrX 16495455 intron para - chrX 16498253 intron para - chrX_5_16495001 chrX_16495001 RAL-325 1138 chrX 16689644 16689653 chrX 16689709 16689717 4 73 1.0 2.0 1.5 1.6 73 chrX 16689644 intron Sep4 - chrX 16689680 intron Sep4 - chrX 16689717 intron Sep4 - chrX_4_16685001 chrX_16685001 RAL-325 1139 chrX 16815380 16815388 chrX 16815456 16815464 4 76 1.0 1.0 1.0 2.0 84 chrX 16815380 intron CG4829 + chrX 16815422 intron CG4829 + chrX 16815464 intron CG4829 + chrX_4_16815001 chrX_16815001 RAL-325 1140 chrX 17061572 17061597 chrX 17061694 17061720 6 121 1.5 1.5 1.5 2.4 148 chrX 17061572 intron CG45002 - chrX 17061646 intron CG45002 - chrX 17061720 intron CG45002 - chrX_6_17060001 chrX_17060001 RAL-325 1141 chrX 17178397 17178416 chrX 17178484 17178503 4 86 4.0 1.0 2.5 1.1 106 chrX 17178397 5` UTR baz + chrX 17178450 5` UTR baz + chrX 17178503 5` UTR baz + chrX_4_17175001 chrX_17175001 RAL-325 1142 chrX 17234264 17234292 chrX 17234358 17234358 5 85 1.5 0.0 0.8 2.8 94 chrX 17234264 intron f + chrX 17234311 intron f + chrX 17234358 intron f + chrX_5_17230001 chrX_17230001 RAL-325 1143 chrX 17352593 17352621 chrX 17352696 17352707 6 100 0.0 1.0 0.5 4.0 114 chrX 17352593 intergenic not near genes chrX 17352650 intergenic not near genes chrX 17352707 intergenic not near genes chrX_6_17350001 chrX_17350001 RAL-325 1144 chrX 17680901 17680925 chrX 17680975 17681000 7 76 3.0 3.5 3.2 1.7 99 chrX 17680901 intron chas - chrX 17680950 intron chas - chrX 17681000 intron chas - chrX_7_17680001 chrX_17680001 RAL-325 1145 chrX 18122826 18122852 chrX 18122902 18122928 8 74 2.5 1.0 1.8 2.9 102 chrX 18122826 5` UTR CR45606 + chrX 18122877 5` UTR CR45606 + chrX 18122928 intergenic CR45606 + chrX_8_18120001 chrX_18120001 RAL-325 1146 chrX 18218055 18218067 chrX 18218157 18218184 5 114 1.0 0.5 0.8 2.8 129 chrX 18218055 intron CG33639 - chrX 18218120 intron CG33639 - chrX 18218184 intron CG33639 - chrX_5_18215001 chrX_18215001 RAL-325 1147 chrX 18270049 18270067 chrX 18270137 18270154 4 87 1.5 1.0 1.2 1.8 105 chrX 18270049 intergenic not near genes chrX 18270102 intergenic not near genes chrX 18270154 intergenic not near genes chrX_4_18270001 chrX_18270001 RAL-325 1148 chrX 18429500 18429525 chrX 18434810 18434835 Transpac 7 5310 5.5 4.5 5.0 1.2 5335 chrX 18429500 intergenic not near genes chrX 18432168 intergenic not near genes chrX 18434835 intergenic not near genes chrX_7_18430001 chrX_18430001 RAL-325 1149 chrX 18490043 18490056 chrX 18490198 18490202 6 153 3.0 1.5 2.2 1.9 159 chrX 18490043 intergenic CG15046 - chrX 18490122 intergenic not near genes chrX 18490202 intergenic not near genes chrX_6_18490001 chrX_18490001 RAL-325 1150 chrX 18524361 18524372 chrX 18524440 18524443 5 77 2.5 4.5 3.5 1.1 82 chrX 18524361 intron Bx + chrX 18524402 intron Bx + chrX 18524443 intron Bx + chrX_5_18520001 chrX_18520001 RAL-325 1151 chrX 18558785 18558805 chrX 18558861 18558885 8 79 1.5 2.0 1.8 2.9 100 chrX 18558785 intron Bx + chrX 18558835 intron Bx + chrX 18558885 intron Bx + chrX_8_18555001 chrX_18555001 RAL-325 1152 chrX 18645034 18645046 chrX 18645113 18645144 5 93 1.5 2.5 2.0 1.7 110 chrX 18645034 intron Rip11 - chrX 18645089 intron Rip11 - chrX 18645144 intron Rip11 - chrX_5_18645001 chrX_18645001 RAL-325 1153 chrX 18957076 18957096 chrX 18965736 18965756 roo 5 8660 2.0 0.0 1.0 2.5 8680 chrX 18957076 intron CG43759 + chrX 18961416 intron CG43759 + chrX 18965756 intron CG43759 + chrX_5_18960001 chrX_18960001 RAL-325 1154 chrX 19014360 19014395 chrX 19014438 19014473 8 75 1.0 3.5 2.2 2.5 113 chrX 19014360 intron CG43759 + chrX 19014416 intron CG43759 + chrX 19014473 intron CG43759 + chrX_8_19010001 chrX_19010001 RAL-325 1155 chrX 19019938 19019969 chrX 19020076 19020096 5 129 1.5 0.5 1.0 2.5 158 chrX 19019938 intron CG43759 + chrX 19020017 intron CG43759 + chrX 19020096 intron CG43759 + chrX_5_19020001 chrX_19020001 RAL-325 1156 chrX 19060409 19060438 chrX 19065193 19065222 Doc 6 4784 1.5 0.5 1.0 3.0 4813 chrX 19060409 intron CG14190 + chrX 19062816 intron CG14190 + chrX 19065222 intron CG14190 + chrX_6_19060001 chrX_19060001 RAL-325 1157 chrX 19080326 19080344 chrX 19080432 19080450 4 106 3.5 2.5 3.0 1.0 124 chrX 19080326 intergenic not near genes chrX 19080388 intergenic not near genes chrX 19080450 intergenic not near genes chrX_4_19080001 chrX_19080001 RAL-325 1158 chrX 19098775 19098780 chrX 19098853 19098858 4 78 2.5 1.5 2.0 1.3 83 chrX 19098775 intergenic not near genes chrX 19098816 intergenic not near genes chrX 19098858 intergenic not near genes chrX_4_19095001 chrX_19095001 RAL-325 1159 chrX 19099661 19099682 chrX 19099741 19099763 6 81 1.5 0.0 0.8 3.3 102 chrX 19099661 intergenic not near genes chrX 19099712 intergenic not near genes chrX 19099763 intergenic not near genes chrX_6_19095001 chrX_19095001 RAL-325 1160 chrX 19106825 19106847 chrX 19106899 19106922 6 75 1.0 3.5 2.2 1.9 97 chrX 19106825 intergenic not near genes chrX 19106874 intergenic not near genes chrX 19106922 intergenic not near genes chrX_6_19105001 chrX_19105001 RAL-325 1161 chrX 13057298 13057300 chrX 19242812 19242814 7 6185514 3.0 7.5 5.2 1.1 6185516 chrX 13057298 intron rad + chrX 16150056 intergenic not near genes chrX 19242814 intergenic not near genes chrX_7_16150001 chrX_16150001 RAL-325 1162 chrX 19281009 19281033 chrX 19281135 19281162 4 128 0.0 1.5 0.8 2.2 153 chrX 19281009 intergenic CG8034 - chrX 19281086 intergenic CG8034 - chrX 19281162 intergenic CG8034 - chrX_4_19280001 chrX_19280001 RAL-325 1163 chrX 19472125 19472154 chrX 19472693 19472724 jockey 7 566 0.5 1.0 0.8 3.9 599 chrX 19472125 intergenic kek5 + chrX 19472424 intergenic not near genes chrX 19472724 intergenic not near genes chrX_7_19470001 chrX_19470001 RAL-325 1164 chrX 19530081 19530111 chrX 19530155 19530191 9 75 2.0 3.0 2.5 2.6 110 chrX 19530081 3` UTR CoRest + chrX 19530136 3` UTR CoRest + chrX 19530191 3` UTR CoRest + chrX_9_19530001 chrX_19530001 RAL-325 1165 chrX 19538916 19538949 chrX 19538999 19539010 7 79 2.5 4.0 3.2 1.7 94 chrX 19538916 intron CG32532 - chrX 19538963 intron CG32532 - chrX 19539010 intron CG32532 - chrX_7_19535001 chrX_19535001 RAL-325 1166 chrX 19593958 19593977 chrX 19594039 19594062 8 83 2.5 5.5 4.0 1.6 104 chrX 19593958 exon CG14205 + chrX 19594010 intron CG14205 + chrX 19594062 intron CG14205 + chrX_8_19590001 chrX_19590001 RAL-325 1167 chrX 19662035 19662053 chrX 19662257 19662276 5 220 1.5 1.0 1.2 2.3 241 chrX 19662035 intron CG14223 - chrX 19662156 intron CG14223 - chrX 19662276 intron CG14223 - chrX_5_19660001 chrX_19660001 RAL-325 1168 chrX 19710072 19710103 chrX 19711857 19711887 S-element 7 1782 1.0 4.5 2.8 1.8 1815 chrX 19710072 intron meso18E - chrX 19710980 intron meso18E - chrX 19711887 intron meso18E - chrX_7_19710001 chrX_19710001 RAL-325 1169 chrX 19984543 19984570 chrX 19984623 19984638 5 75 0.5 0.0 0.2 4.2 95 chrX 19984543 intergenic not near genes chrX 19984590 intergenic not near genes chrX 19984638 intergenic not near genes chrX_5_19980001 chrX_19980001 RAL-325 1170 chrX 20279755 20279774 chrX 20279836 20279854 6 79 0.5 0.5 0.5 4.0 99 chrX 20279755 intergenic not near genes chrX 20279804 intergenic not near genes chrX 20279854 intergenic not near genes chrX_6_20275001 chrX_20275001 RAL-325 1171 chrX 20312882 20312896 chrX 20312960 20312972 4 76 3.0 2.5 2.8 1.1 90 chrX 20312882 intron CG1504 - chrX 20312927 intron CG1504 - chrX 20312972 intron CG1504 - chrX_4_20310001 chrX_20310001 RAL-325 1172 chrX 20359160 20359167 chrX 20359223 20359232 4 68 0.5 2.0 1.2 1.8 72 chrX 20359160 intergenic not near genes chrX 20359196 intergenic not near genes chrX 20359232 intergenic not near genes chrX_4_20355001 chrX_20355001 RAL-325 1173 chrX 20374112 20374128 chrX 20374169 20374202 9 73 0.0 3.0 1.5 3.6 90 chrX 20374112 intergenic not near genes chrX 20374157 intergenic not near genes chrX 20374202 intergenic not near genes chrX_9_20370001 chrX_20370001 RAL-325 1174 chrX 20504126 20504155 chrX 20505644 20505673 transib2 7 1519 2.0 3.5 2.8 1.8 1547 chrX 20504126 intron RhoGAP19D - chrX 20504900 intron RhoGAP19D - chrX 20505673 intron RhoGAP19D - chrX_7_20500001 chrX_20500001 RAL-325 1175 chrX 20578079 20578104 chrX 20578157 20578159 4 72 0.0 0.5 0.2 3.3 80 chrX 20578079 intergenic not near genes chrX 20578119 intergenic not near genes chrX 20578159 intergenic not near genes chrX_4_20575001 chrX_20575001 RAL-325 1176 chrX 20940732 20940753 chrX 20942200 20942221 hobo 5 1467 2.0 2.5 2.2 1.6 1489 chrX 20940732 intergenic not near genes chrX 20941476 intergenic not near genes chrX 20942221 intergenic not near genes chrX_5_20940001 chrX_20940001 RAL-325 1177 chrX 21061876 21061892 chrX 21062360 21062371 roo 5 481 1.5 2.5 2.0 1.7 495 chrX 21061876 intron bves + chrX 21062124 intron bves + chrX 21062371 intron,3` UTR bves +,CG32512 - chrX_5_21060001 chrX_21060001 RAL-325 1178 chrX 21247883 21247913 chrX 21247995 21248016 8 111 1.5 1.0 1.2 3.6 133 chrX 21247883 intron CG32521 - chrX 21247950 intron CG32521 - chrX 21248016 intron CG32521 - chrX_8_21245001 chrX_21245001 RAL-325 1179 chrX 21428335 21428361 chrX 21428525 21428526 7 185 1.5 2.0 1.8 2.5 191 chrX 21428335 intron CG42343 - chrX 21428430 intron CG42343 - chrX 21428526 intron CG42343 - chrX_7_21425001 chrX_21425001 RAL-325 1180 chrX 21458692 21458724 chrX 21464127 21464160 Ivk 9 5435 0.0 3.5 1.8 3.2 5468 chrX 21458692 intergenic not near genes chrX 21461426 intergenic not near genes chrX 21464160 intergenic not near genes chrX_9_21460001 chrX_21460001 RAL-325 1181 chrX 21516997 21517019 chrX 21517076 21517096 4 76 1.5 4.0 2.8 1.1 99 chrX 21516997 intron CR45082 - chrX 21517046 intron CR45082 - chrX 21517096 intron CR45082 - chrX_4_21515001 chrX_21515001 RAL-325 1182 chrX 22661979 22662009 chrX 22662078 22662101 5 97 0.0 0.5 0.2 4.2 122 chrX 22661979 intron CR44997 + chrX 22662040 intron CR44997 + chrX 22662101 intron CR44997 + chrX_5_22660001 chrX_22660001 RAL-325 1183 chrX 22982840 22982868 chrX 22983023 22983051 12 181 0.5 1.0 0.8 6.7 211 chrX 22982840 intron,intron stnA -,stnB - chrX 22982946 intron,intron stnA -,stnB - chrX 22983051 intron,intron stnA -,stnB - chrX_12_22980001 chrX_22980001 RAL-325 1184 chrX 22987109 22987135 chrX 22989768 22989793 Burdock 4 2658 0.5 1.0 0.8 2.2 2684 chrX 22987109 intron,intron stnA -,stnB - chrX 22988451 intron,intron stnA -,stnB - chrX 22989793 intron,intron stnA -,stnB - chrX_4_22985001 chrX_22985001 RAL-325 1185 chrX 22996308 22996337 chrX 23003542 23003571 roo 8 7232 1.0 1.5 1.2 3.6 7263 chrX 22996308 intron,intron stnA -,stnB - chrX 22999940 intron,intron stnA -,stnB - chrX 23003571 intron,intron stnA -,stnB - chrX_8_22995001 chrX_22995001 RAL-325