SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 47464 47490 chr2L 52565 52595 jockey 9 5104 5.0 2.5 3.8 1.9 5131 chr2L 47464 intron Cda5 - chr2L 50030 intron Cda5 - chr2L 52595 intron Cda5 - chr2L_9_50001 chr2L_50001 RAL-318 2 chr2L 140754 140783 chr2L 141097 141122 9 345 2.5 2.5 2.5 2.6 368 chr2L 140754 intron,exon,5` UTR CG11455 +,CG31975 -,CG31976 - chr2L 140938 intron,5` UTR,5` UTR CG11455 +,CG31975 -,CG31976 - chr2L 141122 intron,3` UTR CG11455 +,CG31974 - chr2L_9_140001 chr2L_140001 RAL-318 3 chr2L 142494 142523 chr2L 142587 142616 10 93 4.0 1.5 2.8 2.6 122 chr2L 142494 intron,5` UTR CG11455 +,CG31974 - chr2L 142555 intron,5` UTR CG11455 +,CG31974 - chr2L 142616 intron,5` UTR CG11455 +,CG31974 - chr2L_10_140001 chr2L_140001 RAL-318 4 chr2L 179460 179489 chr2L 179543 179572 5 83 2.5 3.5 3.0 1.2 112 chr2L 179460 intron spen + chr2L 179516 intron spen + chr2L 179572 intron spen + chr2L_5_175001 chr2L_175001 RAL-318 5 chr2L 314284 314313 chr2L 314370 314399 6 82 2.5 0.5 1.5 2.4 115 chr2L 314284 intron Plc21C + chr2L 314342 intron Plc21C + chr2L 314399 intron Plc21C + chr2L_6_310001 chr2L_310001 RAL-318 6 chr2L 327363 327387 chr2L 327449 327473 6 86 6.0 3.5 4.8 1.0 110 chr2L 327363 intron,intron Plc21C +,CG43755 - chr2L 327418 intron,intron Plc21C +,CG43755 - chr2L 327473 intron,intron Plc21C +,CG43755 - chr2L_6_325001 chr2L_325001 RAL-318 7 chr2L 467360 467366 chr2L 467458 467465 4 99 4.5 1.0 2.8 1.1 105 chr2L 467360 intron CG4297 - chr2L 467412 intron CG4297 - chr2L 467465 intron CG4297 - chr2L_4_465001 chr2L_465001 RAL-318 8 chr2L 764566 764590 chr2L 764647 764647 13 79 1.5 2.5 2.0 4.3 81 chr2L 764566 intergenic not near genes chr2L 764606 intergenic not near genes chr2L 764647 intergenic not near genes chr2L_13_760001 chr2L_760001 RAL-318 9 chr2L 770463 770486 chr2L 772244 772265 Bari1 8 1780 4.0 3.5 3.8 1.7 1802 chr2L 770463 intergenic not near genes chr2L 771364 intergenic not near genes chr2L 772265 intergenic CR44614 + chr2L_8_770001 chr2L_770001 RAL-318 10 chr2L 791448 791479 chr2L 791541 791541 7 89 1.5 1.0 1.2 3.2 93 chr2L 791448 intergenic not near genes chr2L 791494 intergenic not near genes chr2L 791541 intergenic not near genes chr2L_7_790001 chr2L_790001 RAL-318 11 chr2L 795263 795293 chr2L 795370 795387 6 106 2.0 0.0 1.0 3.0 124 chr2L 795263 intergenic not near genes chr2L 795325 intergenic not near genes chr2L 795387 intergenic not near genes chr2L_6_795001 chr2L_795001 RAL-318 12 chr2L 877840 877863 chr2L 877921 877944 6 80 4.0 4.5 4.2 1.2 104 chr2L 877840 3` UTR,exon CG15824 -,ninaA + chr2L 877892 3` UTR,intron CG15824 -,ninaA + chr2L 877944 3` UTR,intron CG15824 -,ninaA + chr2L_6_875001 chr2L_875001 RAL-318 13 chr2L 922478 922496 chr2L 922559 922577 5 81 1.5 5.5 3.5 1.1 99 chr2L 922478 intergenic CG4341 + chr2L 922528 intergenic CG4341 + chr2L 922577 intergenic CG4341 + chr2L_5_920001 chr2L_920001 RAL-318 14 chr2L 976894 976906 chr2L 984529 984542 roo 8 7635 2.0 1.5 1.8 2.9 7648 chr2L 976894 intergenic not near genes chr2L 980718 intergenic not near genes chr2L 984542 intergenic not near genes chr2L_8_980001 chr2L_980001 RAL-318 15 chr2L 1035564 1035580 chr2L 1035641 1035644 5 74 3.0 4.0 3.5 1.1 80 chr2L 1035564 intron IA-2 - chr2L 1035604 intron IA-2 - chr2L 1035644 intron IA-2 - chr2L_5_1035001 chr2L_1035001 RAL-318 16 chr2L 1035588 1035591 chr2L 1035638 1035668 4 70 1.0 4.0 2.5 1.1 80 chr2L 1035588 intron IA-2 - chr2L 1035628 intron IA-2 - chr2L 1035668 intron IA-2 - chr2L_4_1035001 chr2L_1035001 RAL-318 17 chr2L 1083698 1083721 chr2L 1083774 1083797 6 76 2.0 2.0 2.0 2.0 99 chr2L 1083698 3` UTR,3` UTR Atg4a +,CG4629 - chr2L 1083748 3` UTR,3` UTR Atg4a +,CG4629 - chr2L 1083797 3` UTR,3` UTR Atg4a +,CG4629 - chr2L_6_1080001 chr2L_1080001 RAL-318 18 chr2L 1126682 1126700 chr2L 1126758 1126767 5 74 5.0 7.0 6.0 0.7 85 chr2L 1126682 intron Pino - chr2L 1126724 intron Pino - chr2L 1126767 intron Pino - chr2L_5_1125001 chr2L_1125001 RAL-318 19 chr2L 1220129 1220161 chr2L 1227595 1227627 blood 9 7465 3.5 2.5 3.0 2.2 7498 chr2L 1220129 intron CG42329 + chr2L 1223878 intron CG42329 + chr2L 1227627 intron CG42329 + chr2L_9_1220001 chr2L_1220001 RAL-318 20 chr2L 1322022 1322053 chr2L 1322111 1322142 11 85 4.5 4.5 4.5 2.0 120 chr2L 1322022 intergenic not near genes chr2L 1322082 intergenic not near genes chr2L 1322142 intergenic not near genes chr2L_11_1320001 chr2L_1320001 RAL-318 21 chr2L 1503432 1503457 chr2L 1503510 1503532 8 77 1.5 2.0 1.8 2.9 100 chr2L 1503432 intron CR44064 + chr2L 1503482 intron CR44064 + chr2L 1503532 intron CR44064 + chr2L_8_1500001 chr2L_1500001 RAL-318 22 chr2L 1570686 1570719 chr2L 1573558 1573591 F-element 8 2870 2.5 4.5 3.5 1.8 2905 chr2L 1570686 intron haf + chr2L 1572138 intron haf + chr2L 1573591 intron haf + chr2L_8_1570001 chr2L_1570001 RAL-318 23 chr2L 1632624 1632642 chr2L 1632708 1632726 8 84 7.5 2.0 4.8 1.4 102 chr2L 1632624 intergenic not near genes chr2L 1632675 intergenic not near genes chr2L 1632726 intergenic not near genes chr2L_8_1630001 chr2L_1630001 RAL-318 24 chr2L 1711360 1711377 chr2L 1711684 1711701 mdg3 5 324 4.0 3.0 3.5 1.1 341 chr2L 1711360 3` UTR,3` UTR mRpL48 +,frtz - chr2L 1711530 3` UTR frtz - chr2L 1711701 3` UTR frtz - chr2L_5_1710001 chr2L_1710001 RAL-318 25 chr2L 1721830 1721854 chr2L 1721914 1721938 8 83 0.0 2.0 1.0 4.0 108 chr2L 1721830 intron Rim2 - chr2L 1721884 intron Rim2 - chr2L 1721938 intron Rim2 - chr2L_8_1720001 chr2L_1720001 RAL-318 26 chr2L 1958743 1958757 chr2L 1958822 1958837 5 79 5.0 1.0 3.0 1.2 94 chr2L 1958743 intron erm - chr2L 1958790 intron erm - chr2L 1958837 intron erm - chr2L_5_1955001 chr2L_1955001 RAL-318 27 chr2L 1995678 1995704 chr2L 1995768 1995797 6 91 1.0 6.5 3.8 1.2 119 chr2L 1995678 intergenic not near genes chr2L 1995738 intergenic not near genes chr2L 1995797 intergenic not near genes chr2L_6_1995001 chr2L_1995001 RAL-318 28 chr2L 2100385 2100406 chr2L 2109528 2109548 roo 8 9144 4.5 4.0 4.2 1.5 9163 chr2L 2100385 intron dpr3 - chr2L 2104966 intron dpr3 - chr2L 2109548 intron dpr3 - chr2L_8_2100001 chr2L_2100001 RAL-318 29 chr2L 2112131 2112143 chr2L 2119775 2119805 opus 4 7652 2.5 0.5 1.5 1.6 7674 chr2L 2112131 intergenic not near genes chr2L 2115968 intergenic not near genes chr2L 2119805 intergenic not near genes chr2L_4_2115001 chr2L_2115001 RAL-318 30 chr2L 2134195 2134226 chr2L 2134323 2134349 13 127 1.0 4.5 2.8 3.4 154 chr2L 2134195 intron GlyP + chr2L 2134272 intron GlyP + chr2L 2134349 intron GlyP + chr2L_13_2130001 chr2L_2130001 RAL-318 31 chr2L 2198372 2198394 chr2L 2198452 2198474 4 80 3.5 4.5 4.0 0.8 102 chr2L 2198372 intergenic CG34172 - chr2L 2198423 intergenic not near genes chr2L 2198474 intergenic not near genes chr2L_4_2195001 chr2L_2195001 RAL-318 32 chr2L 2244469 2244497 chr2L 2244583 2244611 8 114 3.0 4.0 3.5 1.8 142 chr2L 2244469 3` UTR CG4267 + chr2L 2244540 3` UTR CG4267 + chr2L 2244611 3` UTR CG4267 + chr2L_8_2240001 chr2L_2240001 RAL-318 33 chr2L 2311080 2311090 chr2L 2311167 2311186 4 90 0.0 0.0 0.0 4.0 106 chr2L 2311080 intron CG9967 - chr2L 2311133 intron CG9967 - chr2L 2311186 intron CG9967 - chr2L_4_2310001 chr2L_2310001 RAL-318 34 chr2L 2337340 2337368 chr2L 2337431 2337459 8 89 3.0 2.5 2.8 2.1 119 chr2L 2337340 intron,intron CG9967 -,eys + chr2L 2337400 intron,intron CG9967 -,eys + chr2L 2337459 intron,intron CG9967 -,eys + chr2L_8_2335001 chr2L_2335001 RAL-318 35 chr2L 2427381 2427398 chr2L 2427467 2427484 4 86 1.5 5.0 3.2 1.0 103 chr2L 2427381 3` UTR CR44912 - chr2L 2427432 3` UTR CR44912 - chr2L 2427484 3` UTR CR44912 - chr2L_4_2425001 chr2L_2425001 RAL-318 36 chr2L 2531200 2531230 chr2L 2531312 2531336 7 110 0.5 2.0 1.2 3.2 136 chr2L 2531200 intergenic not near genes chr2L 2531268 intergenic not near genes chr2L 2531336 intergenic not near genes chr2L_7_2530001 chr2L_2530001 RAL-318 37 chr2L 2613388 2613410 chr2L 2613473 2613495 4 85 1.0 2.5 1.8 1.4 107 chr2L 2613388 intergenic not near genes chr2L 2613442 intergenic not near genes chr2L 2613495 intergenic not near genes chr2L_4_2610001 chr2L_2610001 RAL-318 38 chr2L 2618037 2618066 chr2L 2618116 2618145 7 79 3.0 2.5 2.8 1.8 108 chr2L 2618037 intergenic not near genes chr2L 2618091 intergenic not near genes chr2L 2618145 intergenic not near genes chr2L_7_2615001 chr2L_2615001 RAL-318 39 chr2L 2661201 2661235 chr2L 2663039 2663041 I-element 6 1825 4.5 3.0 3.8 1.2 1840 chr2L 2661201 intergenic not near genes chr2L 2662121 intergenic not near genes chr2L 2663041 intergenic not near genes chr2L_6_2660001 chr2L_2660001 RAL-318 40 chr2L 2698871 2698894 chr2L 2698953 2698980 8 85 1.5 4.0 2.8 2.1 109 chr2L 2698871 intron CG31690 + chr2L 2698926 intron CG31690 + chr2L 2698980 intron CG31690 + chr2L_8_2695001 chr2L_2695001 RAL-318 41 chr2L 2937422 2937451 chr2L 2937499 2937528 5 75 2.5 2.0 2.2 1.6 106 chr2L 2937422 intron lilli + chr2L 2937475 intron lilli + chr2L 2937528 intron lilli + chr2L_5_2935001 chr2L_2935001 RAL-318 42 chr2L 3113415 3113448 chr2L 3113510 3113543 5 94 0.5 3.5 2.0 1.7 128 chr2L 3113415 intron toc - chr2L 3113479 intron toc - chr2L 3113543 intron toc - chr2L_5_3110001 chr2L_3110001 RAL-318 43 chr2L 3147277 3147308 chr2L 3147353 3147382 11 74 3.0 4.5 3.8 2.3 105 chr2L 3147277 3` UTR Mad - chr2L 3147330 3` UTR Mad - chr2L 3147382 3` UTR Mad - chr2L_11_3145001 chr2L_3145001 RAL-318 44 chr2L 3291247 3291264 chr2L 3291327 3291344 9 79 2.0 4.5 3.2 2.1 97 chr2L 3291247 3` UTR CG9664 - chr2L 3291296 3` UTR CG9664 - chr2L 3291344 3` UTR CG9664 - chr2L_9_3290001 chr2L_3290001 RAL-318 45 chr2L 3323258 3323279 chr2L 3323365 3323386 12 106 3.0 3.5 3.2 2.9 128 chr2L 3323258 intergenic CG8837 + chr2L 3323322 intergenic CG8837 + chr2L 3323386 intergenic CG8837 + chr2L_12_3320001 chr2L_3320001 RAL-318 46 chr2L 3482157 3482183 chr2L 3482246 3482273 7 88 1.0 2.5 1.8 2.5 116 chr2L 3482157 intron CG15414 - chr2L 3482215 intron CG15414 - chr2L 3482273 intron CG15414 - chr2L_7_3480001 chr2L_3480001 RAL-318 47 chr2L 3508354 3508370 chr2L 3508432 3508444 5 77 0.0 5.0 2.5 1.4 90 chr2L 3508354 intergenic tim -,CR45299 + chr2L 3508399 intergenic CR45299 +,tim - chr2L 3508444 intergenic CR45299 +,tim - chr2L_5_3505001 chr2L_3505001 RAL-318 48 chr2L 3632353 3632388 chr2L 3632476 3632511 13 121 2.0 2.0 2.0 4.3 158 chr2L 3632353 intron for - chr2L 3632432 intron for - chr2L 3632511 intron for - chr2L_13_3630001 chr2L_3630001 RAL-318 49 chr2L 3649794 3649807 chr2L 3654996 3655009 copia 7 5201 1.0 1.0 1.0 3.5 5215 chr2L 3649794 intron for - chr2L 3652402 intron for - chr2L 3655009 intron for - chr2L_7_3650001 chr2L_3650001 RAL-318 50 chr2L 3785604 3785630 chr2L 3786372 3786384 11 763 11.5 14.5 13.0 0.8 780 chr2L 3785604 3` UTR CG31960 + chr2L 3785994 exon CG31958 + chr2L 3786384 intergenic CG31958 + chr2L_11_3785001 chr2L_3785001 RAL-318 51 chr2L 3784699 3784703 chr2L 3785635 3785639 4 936 27.5 16.5 22.0 0.2 940 chr2L 3784699 intergenic CG31960 + chr2L 3785169 exon CG31960 + chr2L 3785639 intergenic CG31960 +,CG31958 + chr2L_4_3785001 chr2L_3785001 RAL-318 52 chr2L 3785670 3785682 chr2L 3785759 3785771 4 89 0.5 0.0 0.2 3.3 101 chr2L 3785670 intergenic CG31960 +,CG31958 + chr2L 3785720 intergenic CG31958 +,CG31960 + chr2L 3785771 5` UTR CG31958 + chr2L_4_3785001 chr2L_3785001 RAL-318 53 chr2L 3784714 3784715 chr2L 3786372 3786380 5 1659 27.0 14.5 20.8 0.2 1666 chr2L 3784714 intergenic CG31960 + chr2L 3785547 3` UTR CG31960 + chr2L 3786380 intergenic CG31958 + chr2L_5_3785001 chr2L_3785001 RAL-318 54 chr2L 3943792 3943821 chr2L 3943883 3943910 7 89 2.5 0.5 1.5 2.8 118 chr2L 3943792 intron fred - chr2L 3943851 intron fred - chr2L 3943910 intron fred - chr2L_7_3940001 chr2L_3940001 RAL-318 55 chr2L 4066041 4066062 chr2L 4068866 4068887 Juan 8 2823 3.0 4.5 3.8 1.7 2846 chr2L 4066041 intron ed + chr2L 4067464 intron ed + chr2L 4068887 intron ed + chr2L_8_4065001 chr2L_4065001 RAL-318 56 chr2L 4150631 4150649 chr2L 4150707 4150709 8 77 0.0 2.0 1.0 4.0 78 chr2L 4150631 exon CG2955 + chr2L 4150670 exon CG2955 + chr2L 4150709 exon CG2955 + chr2L_8_4150001 chr2L_4150001 RAL-318 57 chr2L 4160501 4160534 chr2L 4160912 4160944 8 410 2.5 4.5 3.5 1.8 443 chr2L 4160501 intergenic not near genes chr2L 4160722 intergenic not near genes chr2L 4160944 intergenic not near genes chr2L_8_4160001 chr2L_4160001 RAL-318 58 chr2L 4166380 4166407 chr2L 4166463 4166488 11 82 3.0 3.5 3.2 2.6 108 chr2L 4166380 intergenic Or24a - chr2L 4166434 intergenic Or24a - chr2L 4166488 intergenic Or24a - chr2L_11_4165001 chr2L_4165001 RAL-318 59 chr2L 4309796 4309820 chr2L 4309871 4309905 9 82 1.0 2.5 1.8 3.2 109 chr2L 4309796 intron tutl + chr2L 4309850 intron tutl + chr2L 4309905 intron tutl + chr2L_9_4305001 chr2L_4305001 RAL-318 60 chr2L 4601707 4601735 chr2L 4609148 4609176 mdg1 11 7441 4.5 7.5 6.0 1.6 7469 chr2L 4601707 intron dp - chr2L 4605442 intron dp - chr2L 4609176 intron dp - chr2L_11_4605001 chr2L_4605001 RAL-318 61 chr2L 4923247 4923256 chr2L 4923338 4923347 4 90 0.0 1.0 0.5 2.7 100 chr2L 4923247 intron hoe1 - chr2L 4923297 intron hoe1 - chr2L 4923347 intron hoe1 - chr2L_4_4920001 chr2L_4920001 RAL-318 62 chr2L 5025133 5025149 chr2L 5025209 5025225 4 76 2.0 0.0 1.0 2.0 92 chr2L 5025133 intron vkg - chr2L 5025179 intron vkg - chr2L 5025225 intron vkg - chr2L_4_5025001 chr2L_5025001 RAL-318 63 chr2L 5259337 5259367 chr2L 5259439 5259469 6 100 2.0 5.5 3.8 1.2 132 chr2L 5259337 intron,5` UTR tkv -,CR44744 + chr2L 5259403 intron,5` UTR tkv -,CR44744 + chr2L 5259469 intron,5` UTR tkv -,CR44744 + chr2L_6_5255001 chr2L_5255001 RAL-318 64 chr2L 5573688 5573711 chr2L 5573764 5573787 7 76 2.0 3.0 2.5 2.0 99 chr2L 5573688 intergenic not near genes chr2L 5573738 intergenic not near genes chr2L 5573787 intergenic not near genes chr2L_7_5570001 chr2L_5570001 RAL-318 65 chr2L 5594319 5594331 chr2L 5594410 5594420 8 92 6.5 0.0 3.2 1.9 101 chr2L 5594319 intergenic not near genes chr2L 5594370 intergenic not near genes chr2L 5594420 intergenic not near genes chr2L_8_5590001 chr2L_5590001 RAL-318 66 chr2L 5605647 5605651 chr2L 5605741 5605745 4 94 5.0 0.0 2.5 1.1 98 chr2L 5605647 intron CG14010 - chr2L 5605696 intron CG14010 - chr2L 5605745 intron CG14010 - chr2L_4_5605001 chr2L_5605001 RAL-318 67 chr2L 5692317 5692330 chr2L 5692394 5692408 7 77 2.0 5.0 3.5 1.6 91 chr2L 5692317 intergenic not near genes chr2L 5692362 intergenic not near genes chr2L 5692408 intergenic not near genes chr2L_7_5690001 chr2L_5690001 RAL-318 68 chr2L 5728998 5729030 chr2L 5729081 5729113 8 83 1.5 5.5 3.5 1.8 115 chr2L 5728998 intron CG11030 + chr2L 5729056 intron CG11030 + chr2L 5729113 intron CG11030 + chr2L_8_5725001 chr2L_5725001 RAL-318 69 chr2L 5827710 5827741 chr2L 5836715 5836749 roo 17 9005 2.5 5.5 4.0 3.4 9039 chr2L 5827710 intron TrissinR + chr2L 5832230 intron TrissinR + chr2L 5836749 intron TrissinR + chr2L_17_5830001 chr2L_5830001 RAL-318 70 chr2L 5897593 5897627 chr2L 5897676 5897709 15 82 5.5 1.5 3.5 3.3 116 chr2L 5897593 intergenic not near genes chr2L 5897651 intergenic not near genes chr2L 5897709 intergenic not near genes chr2L_15_5895001 chr2L_5895001 RAL-318 71 chr2L 5904462 5904473 chr2L 5904542 5904553 4 80 2.5 1.0 1.8 1.4 91 chr2L 5904462 intron CG9021 - chr2L 5904508 intron CG9021 - chr2L 5904553 intron CG9021 - chr2L_4_5900001 chr2L_5900001 RAL-318 72 chr2L 6021627 6021639 chr2L 6021703 6021717 7 77 2.5 0.0 1.2 3.2 90 chr2L 6021627 exon CG13996 + chr2L 6021672 3` UTR CG13996 + chr2L 6021717 3` UTR CG13996 + chr2L_7_6020001 chr2L_6020001 RAL-318 73 chr2L 6136532 6136562 chr2L 6136649 6136651 7 113 1.0 1.0 1.0 3.5 119 chr2L 6136532 intergenic not near genes chr2L 6136592 intergenic not near genes chr2L 6136651 intergenic not near genes chr2L_7_6135001 chr2L_6135001 RAL-318 74 chr2L 6283946 6283978 chr2L 6284056 6284088 5 111 1.5 1.0 1.2 2.3 142 chr2L 6283946 intron Ddr + chr2L 6284017 intron Ddr + chr2L 6284088 intron Ddr + chr2L_5_6280001 chr2L_6280001 RAL-318 75 chr2L 6426858 6426887 chr2L 6445117 6445146 roo 14 18259 2.0 3.0 2.5 4.0 18288 chr2L 6426858 3` UTR CG9527 - chr2L 6436002 intron CG9527 - chr2L 6445146 exon CG9527 - chr2L_14_6435001 chr2L_6435001 RAL-318 76 chr2L 6463560 6463583 chr2L 6463651 6463675 5 89 2.5 4.5 3.5 1.1 115 chr2L 6463560 exon CG16947 - chr2L 6463618 exon CG16947 - chr2L 6463675 exon CG16947 - chr2L_5_6460001 chr2L_6460001 RAL-318 77 chr2L 6544372 6544384 chr2L 6544462 6544475 4 90 4.0 1.0 2.5 1.1 103 chr2L 6544372 intron eya - chr2L 6544424 intron eya - chr2L 6544475 intron eya - chr2L_4_6540001 chr2L_6540001 RAL-318 78 chr2L 6626889 6626912 chr2L 6626974 6626975 7 82 3.5 4.0 3.8 1.5 86 chr2L 6626889 intron Oatp26F - chr2L 6626932 intron Oatp26F - chr2L 6626975 intron Oatp26F - chr2L_7_6625001 chr2L_6625001 RAL-318 79 chr2L 6655528 6655544 chr2L 6655889 6655905 7 361 3.5 7.0 5.2 1.1 377 chr2L 6655528 exon CG31633 - chr2L 6655716 exon CG31633 - chr2L 6655905 exon CG31633 - chr2L_7_6655001 chr2L_6655001 RAL-318 80 chr2L 6716612 6716632 chr2L 6716689 6716721 9 82 4.0 3.5 3.8 1.9 109 chr2L 6716612 intergenic AkhR - chr2L 6716666 intergenic AkhR - chr2L 6716721 intergenic not near genes chr2L_9_6715001 chr2L_6715001 RAL-318 81 chr2L 6771987 6771996 chr2L 6772074 6772082 5 86 4.0 1.5 2.8 1.3 95 chr2L 6771987 intron CG11321 - chr2L 6772034 intron CG11321 - chr2L 6772082 intron CG11321 - chr2L_5_6770001 chr2L_6770001 RAL-318 82 chr2L 6840553 6840581 chr2L 6840636 6840664 8 82 4.5 4.0 4.2 1.5 111 chr2L 6840553 intergenic not near genes chr2L 6840608 intergenic not near genes chr2L 6840664 intergenic not near genes chr2L_8_6840001 chr2L_6840001 RAL-318 83 chr2L 7089999 7090019 chr2L 7090076 7090088 7 73 2.0 1.5 1.8 2.5 89 chr2L 7089999 intergenic not near genes chr2L 7090044 intergenic not near genes chr2L 7090088 intergenic not near genes chr2L_7_7090001 chr2L_7090001 RAL-318 84 chr2L 7140842 7140871 chr2L 7140924 7140931 10 76 1.0 3.5 2.2 3.1 89 chr2L 7140842 intron Pvf3 - chr2L 7140886 intron Pvf3 - chr2L 7140931 intron Pvf3 - chr2L_10_7140001 chr2L_7140001 RAL-318 85 chr2L 7343323 7343355 chr2L 7350439 7350469 roo 9 7115 3.5 2.0 2.8 2.4 7146 chr2L 7343323 intron Wnt6 + chr2L 7346896 intron Wnt6 + chr2L 7350469 intron Wnt6 + chr2L_9_7345001 chr2L_7345001 RAL-318 86 chr2L 7436196 7436220 chr2L 7436290 7436314 4 90 1.0 0.5 0.8 2.2 118 chr2L 7436196 intergenic not near genes chr2L 7436255 intergenic not near genes chr2L 7436314 intergenic not near genes chr2L_4_7435001 chr2L_7435001 RAL-318 87 chr2L 7461050 7461079 chr2L 7461302 7461334 9 251 1.5 6.0 3.8 1.9 284 chr2L 7461050 intron Gr28b - chr2L 7461192 intron Gr28b - chr2L 7461334 intron Gr28b - chr2L_9_7460001 chr2L_7460001 RAL-318 88 chr2L 7513772 7513794 chr2L 7513849 7513871 8 77 2.0 5.0 3.5 1.8 99 chr2L 7513772 intron RapGAP1 - chr2L 7513822 intron RapGAP1 - chr2L 7513871 intron RapGAP1 - chr2L_8_7510001 chr2L_7510001 RAL-318 89 chr2L 7569715 7569742 chr2L 7571009 7571018 5 1290 17.0 15.0 16.0 0.3 1303 chr2L 7569715 intron RapGAP1 - chr2L 7570366 intron RapGAP1 - chr2L 7571018 intron RapGAP1 - chr2L_5_7570001 chr2L_7570001 RAL-318 90 chr2L 7835375 7835404 chr2L 7837955 7837968 5 2570 18.0 14.5 16.2 0.3 2593 chr2L 7835375 intergenic not near genes chr2L 7836672 intergenic not near genes chr2L 7837968 intergenic not near genes chr2L_5_7835001 chr2L_7835001 RAL-318 91 chr2L 7922745 7922770 chr2L 7922825 7922851 10 79 3.0 2.0 2.5 2.9 106 chr2L 7922745 intron Snoo - chr2L 7922798 intron Snoo - chr2L 7922851 intron Snoo - chr2L_10_7920001 chr2L_7920001 RAL-318 92 chr2L 7977094 7977112 chr2L 7984068 7984087 297 4 6975 4.5 6.0 5.2 0.6 6993 chr2L 7977094 intron Snoo - chr2L 7980590 intron Snoo - chr2L 7984087 intron,5` UTR Snoo -,CG7231 + chr2L_4_7980001 chr2L_7980001 RAL-318 93 chr2L 8044101 8044119 chr2L 8044179 8044183 6 76 5.5 1.5 3.5 1.3 82 chr2L 8044101 intron CG7466 + chr2L 8044142 intron CG7466 + chr2L 8044183 intron CG7466 + chr2L_6_8040001 chr2L_8040001 RAL-318 94 chr2L 8171280 8171298 chr2L 8171361 8171379 4 81 0.0 3.5 1.8 1.4 99 chr2L 8171280 intron Piezo + chr2L 8171330 intron Piezo + chr2L 8171379 intron Piezo + chr2L_4_8170001 chr2L_8170001 RAL-318 95 chr2L 8244731 8244747 chr2L 8244853 8244869 4 122 0.5 2.5 1.5 1.6 138 chr2L 8244731 intron CG8086 - chr2L 8244800 intron CG8086 - chr2L 8244869 intron CG8086 - chr2L_4_8240001 chr2L_8240001 RAL-318 96 chr2L 8258165 8258201 chr2L 8258262 8258298 6 97 1.0 1.5 1.2 2.7 133 chr2L 8258165 intergenic Btk29A -,mir-2b-1 - chr2L 8258232 intergenic Btk29A -,mir-2b-1 - chr2L 8258298 intergenic Btk29A -,mir-2b-1 - chr2L_6_8255001 chr2L_8255001 RAL-318 97 chr2L 8286305 8286328 chr2L 8286392 8286409 5 86 0.0 8.5 4.2 1.0 104 chr2L 8286305 intron Btk29A - chr2L 8286357 intron Btk29A - chr2L 8286409 intron Btk29A - chr2L_5_8285001 chr2L_8285001 RAL-318 98 chr2L 8336934 8336967 chr2L 8337013 8337046 7 76 0.0 1.0 0.5 4.7 112 chr2L 8336934 intergenic not near genes chr2L 8336990 intergenic not near genes chr2L 8337046 intergenic not near genes chr2L_7_8335001 chr2L_8335001 RAL-318 99 chr2L 8510143 8510160 chr2L 8510231 8510233 4 84 2.5 2.0 2.2 1.2 90 chr2L 8510143 exon CG13096 - chr2L 8510188 intron CG13096 - chr2L 8510233 intron CG13096 - chr2L_4_8510001 chr2L_8510001 RAL-318 100 chr2L 8594463 8594496 chr2L 8601517 8601550 297 6 7054 1.0 1.0 1.0 3.0 7087 chr2L 8594463 intron,3` UTR Sema-1a +,CR43855 - chr2L 8598006 intron Sema-1a + chr2L 8601550 intron Sema-1a + chr2L_6_8595001 chr2L_8595001 RAL-318 101 chr2L 8604982 8604995 chr2L 8605076 8605093 4 96 1.5 0.5 1.0 2.0 111 chr2L 8604982 intron Sema-1a + chr2L 8605038 intron Sema-1a + chr2L 8605093 intron Sema-1a + chr2L_4_8605001 chr2L_8605001 RAL-318 102 chr2L 8723117 8723146 chr2L 8731494 8731523 Tirant 7 8377 2.0 3.0 2.5 2.0 8406 chr2L 8723117 intron raw - chr2L 8727320 intron raw - chr2L 8731523 intron raw - chr2L_7_8725001 chr2L_8725001 RAL-318 103 chr2L 8789310 8789343 chr2L 8789385 8789408 11 72 1.5 2.0 1.8 3.9 98 chr2L 8789310 intergenic not near genes chr2L 8789359 intergenic not near genes chr2L 8789408 intergenic not near genes chr2L_11_8785001 chr2L_8785001 RAL-318 104 chr2L 8795002 8795038 chr2L 8795091 8795127 12 86 2.5 0.0 1.2 5.5 125 chr2L 8795002 intergenic not near genes chr2L 8795064 intergenic not near genes chr2L 8795127 intergenic not near genes chr2L_12_8795001 chr2L_8795001 RAL-318 105 chr2L 9000280 9000297 chr2L 9007790 9007807 roo 6 7510 5.0 0.5 2.8 1.6 7527 chr2L 9000280 intergenic Try29F + chr2L 9004044 intergenic not near genes chr2L 9007807 intergenic not near genes chr2L_6_9000001 chr2L_9000001 RAL-318 106 chr2L 9084338 9084340 chr2L 16217660 16217661 9 7133321 15.5 31.0 23.2 0.4 7133323 chr2L 9084338 intron Toll-4 + chr2L 12651000 intergenic not near genes chr2L 16217661 intergenic not near genes chr2L_9_12650001 chr2L_12650001 RAL-318 107 chr2L 9202065 9202080 chr2L 9202141 9202145 5 73 2.5 4.0 3.2 1.2 80 chr2L 9202065 intron tai + chr2L 9202105 intron tai + chr2L 9202145 intron tai + chr2L_5_9200001 chr2L_9200001 RAL-318 108 chr2L 9223017 9223033 chr2L 9223102 9223118 7 84 7.0 0.0 3.5 1.6 101 chr2L 9223017 intron tai + chr2L 9223068 intron tai + chr2L 9223118 intron tai + chr2L_7_9220001 chr2L_9220001 RAL-318 109 chr2L 9225087 9225105 chr2L 9225167 9225185 10 80 0.5 4.0 2.2 3.1 98 chr2L 9225087 intron tai + chr2L 9225136 intron tai + chr2L 9225185 intron tai + chr2L_10_9225001 chr2L_9225001 RAL-318 110 chr2L 9283221 9283436 chr2L 9283319 9283517 17 82 3.5 0.0 1.8 6.1 296 chr2L 9283221 intron Ggamma30A + chr2L 9283369 intron Ggamma30A + chr2L 9283517 intron Ggamma30A + chr2L_17_9280001 chr2L_9280001 RAL-318 111 chr2L 9297383 9297405 chr2L 9297460 9297482 9 76 1.5 5.0 3.2 2.1 99 chr2L 9297383 3` UTR Ggamma30A + chr2L 9297432 3` UTR Ggamma30A + chr2L 9297482 3` UTR Ggamma30A + chr2L_9_9295001 chr2L_9295001 RAL-318 112 chr2L 9304351 9304511 chr2L 9304435 9304570 6 79 0.5 1.5 1.0 3.0 219 chr2L 9304351 intergenic CR42844 - chr2L 9304460 3` UTR CR42844 - chr2L 9304570 3` UTR CR42844 - chr2L_6_9300001 chr2L_9300001 RAL-318 113 chr2L 9393512 9393521 chr2L 9396476 9396487 jockey 7 2966 2.0 7.0 4.5 1.3 2975 chr2L 9393512 intron Shawl - chr2L 9395000 intron Shawl - chr2L 9396487 intron Shawl - chr2L_7_9390001 chr2L_9390001 RAL-318 114 chr2L 9490531 9490546 chr2L 9490607 9490626 8 78 4.0 4.5 4.2 1.5 95 chr2L 9490531 intergenic not near genes chr2L 9490578 intergenic not near genes chr2L 9490626 intergenic not near genes chr2L_8_9490001 chr2L_9490001 RAL-318 115 chr2L 9589926 9589953 chr2L 9591641 9591667 11 1714 22.5 10.0 16.2 0.6 1741 chr2L 9589926 exon CG3841 + chr2L 9590796 exon CG3841 + chr2L 9591667 3` UTR CG3841 + chr2L_11_9590001 chr2L_9590001 RAL-318 116 chr2L 9589363 9589383 chr2L 9592536 9592556 6 3173 15.0 22.5 18.8 0.3 3193 chr2L 9589363 intergenic CG3841 + chr2L 9590960 exon CG3841 + chr2L 9592556 intergenic not near genes chr2L_6_9590001 chr2L_9590001 RAL-318 117 chr2L 9620639 9620837 chr2L 9620790 9620920 9 138 0.5 0.5 0.5 6.0 281 chr2L 9620639 intron GlcAT-S + chr2L 9620780 intron GlcAT-S + chr2L 9620920 intron GlcAT-S + chr2L_9_9620001 chr2L_9620001 RAL-318 118 chr2L 9864510 9864544 chr2L 9866111 9866145 10 1602 18.5 12.0 15.2 0.6 1635 chr2L 9864510 intron nAChRalpha6 - chr2L 9865328 intron nAChRalpha6 - chr2L 9866145 intron nAChRalpha6 - chr2L_10_9865001 chr2L_9865001 RAL-318 119 chr2L 9973733 9973756 chr2L 9980844 9980875 HMS-Beagle 8 7115 4.5 6.5 5.5 1.2 7142 chr2L 9973733 intergenic not near genes chr2L 9977304 intergenic not near genes chr2L 9980875 intergenic not near genes chr2L_8_9975001 chr2L_9975001 RAL-318 120 chr2L 9986353 9986379 chr2L 9986448 9986472 10 92 6.0 2.0 4.0 2.0 119 chr2L 9986353 intron bib + chr2L 9986412 intron bib + chr2L 9986472 intron bib + chr2L_10_9985001 chr2L_9985001 RAL-318 121 chr2L 10095645 10095660 chr2L 10095724 10095726 5 77 2.0 3.0 2.5 1.4 81 chr2L 10095645 intron CG44153 - chr2L 10095686 intron CG44153 - chr2L 10095726 intron CG44153 - chr2L_5_10095001 chr2L_10095001 RAL-318 122 chr2L 10153204 10153238 chr2L 10153279 10153316 13 78 0.5 6.0 3.2 3.1 112 chr2L 10153204 intron,exon CG44153 -,CG4839 + chr2L 10153260 intron,intron CG44153 -,CG4839 + chr2L 10153316 intron,intron CG44153 -,CG4839 + chr2L_13_10150001 chr2L_10150001 RAL-318 123 chr2L 10156324 10156350 chr2L 10163794 10163820 blood 12 7467 4.0 2.5 3.2 2.9 7496 chr2L 10156324 intron,3` UTR CG44153 -,CG4839 + chr2L 10160072 intron CG44153 - chr2L 10163820 intron CG44153 - chr2L_12_10160001 chr2L_10160001 RAL-318 124 chr2L 10474386 10474413 chr2L 10474465 10474492 7 79 2.5 0.5 1.5 2.8 106 chr2L 10474386 intergenic RluA-1 - chr2L 10474439 intergenic RluA-1 - chr2L 10474492 intergenic RluA-1 - chr2L_7_10470001 chr2L_10470001 RAL-318 125 chr2L 10572702 10572732 chr2L 10572783 10572808 6 80 4.5 3.0 3.8 1.2 106 chr2L 10572702 intron Trim9 + chr2L 10572755 intron Trim9 + chr2L 10572808 intron Trim9 + chr2L_6_10570001 chr2L_10570001 RAL-318 126 chr2L 10580791 10580819 chr2L 10580872 10580900 6 80 4.5 3.0 3.8 1.2 109 chr2L 10580791 intron Trim9 + chr2L 10580846 intron Trim9 + chr2L 10580900 intron Trim9 + chr2L_6_10580001 chr2L_10580001 RAL-318 127 chr2L 10592845 10592871 chr2L 10600507 10600533 opus 4 7662 1.0 1.5 1.2 1.8 7688 chr2L 10592845 intron Trim9 + chr2L 10596689 intron Trim9 + chr2L 10600533 intron Trim9 + chr2L_4_10595001 chr2L_10595001 RAL-318 128 chr2L 10721879 10721903 chr2L 10721955 10721979 4 76 1.0 0.0 0.5 2.7 100 chr2L 10721879 intergenic not near genes chr2L 10721929 intergenic not near genes chr2L 10721979 intergenic not near genes chr2L_4_10720001 chr2L_10720001 RAL-318 129 chr2L 10808247 10808279 chr2L 10808334 10808365 12 85 4.5 4.0 4.2 2.3 118 chr2L 10808247 intron Nos - chr2L 10808306 intron Nos - chr2L 10808365 intron Nos - chr2L_12_10805001 chr2L_10805001 RAL-318 130 chr2L 10862844 10862856 chr2L 10864457 10864470 Rt1c 4 1611 5.0 1.5 3.2 1.0 1626 chr2L 10862844 3` UTR CR43807 - chr2L 10863657 intron CR43807 - chr2L 10864470 3` UTR CR43807 - chr2L_4_10860001 chr2L_10860001 RAL-318 131 chr2L 10862857 10862877 chr2L 10864453 10864468 Rt1c 10 1604 3.5 1.0 2.2 3.1 1611 chr2L 10862857 3` UTR CR43807 - chr2L 10863662 intron CR43807 - chr2L 10864468 3` UTR CR43807 - chr2L_10_10860001 chr2L_10860001 RAL-318 132 chr2L 10916524 10916558 chr2L 10916652 10916675 15 125 1.5 4.0 2.8 3.9 151 chr2L 10916524 intergenic dpr2 - chr2L 10916600 intergenic dpr2 - chr2L 10916675 intergenic dpr2 - chr2L_15_10915001 chr2L_10915001 RAL-318 133 chr2L 10946949 10946977 chr2L 10956164 10956192 roo 7 9214 2.0 8.0 5.0 1.2 9243 chr2L 10946949 intron dpr2 - chr2L 10951570 intron dpr2 - chr2L 10956192 intron dpr2 - chr2L_7_10950001 chr2L_10950001 RAL-318 134 chr2L 11224060 11224091 chr2L 11224170 11224202 5 111 2.0 1.5 1.8 1.8 142 chr2L 11224060 intron ab + chr2L 11224131 intron ab + chr2L 11224202 intron ab + chr2L_5_11220001 chr2L_11220001 RAL-318 135 chr2L 11309017 11309021 chr2L 11309125 11309129 4 108 3.5 4.0 3.8 0.8 112 chr2L 11309017 intergenic not near genes chr2L 11309073 intergenic not near genes chr2L 11309129 intergenic not near genes chr2L_4_11305001 chr2L_11305001 RAL-318 136 chr2L 11404786 11404797 chr2L 11404862 11404873 4 76 1.0 2.0 1.5 1.6 87 chr2L 11404786 intergenic not near genes chr2L 11404830 intergenic not near genes chr2L 11404873 intergenic not near genes chr2L_4_11400001 chr2L_11400001 RAL-318 137 chr2L 11418656 11418675 chr2L 11418735 11418750 7 78 4.5 4.5 4.5 1.3 94 chr2L 11418656 intergenic not near genes chr2L 11418703 intergenic not near genes chr2L 11418750 intergenic not near genes chr2L_7_11415001 chr2L_11415001 RAL-318 138 chr2L 11491146 11491160 chr2L 11491207 11491226 4 66 1.0 1.5 1.2 1.8 80 chr2L 11491146 intergenic not near genes chr2L 11491186 intergenic not near genes chr2L 11491226 intergenic not near genes chr2L_4_11490001 chr2L_11490001 RAL-318 139 chr2L 11536713 11536730 chr2L 11536794 11536809 6 80 5.5 0.5 3.0 1.5 96 chr2L 11536713 3` UTR CG43438 + chr2L 11536761 3` UTR CG43438 + chr2L 11536809 3` UTR CG43438 + chr2L_6_11535001 chr2L_11535001 RAL-318 140 chr2L 11537754 11537786 chr2L 11537871 11537902 7 117 1.5 1.0 1.2 3.2 148 chr2L 11537754 intergenic not near genes chr2L 11537828 intergenic not near genes chr2L 11537902 intergenic not near genes chr2L_7_11535001 chr2L_11535001 RAL-318 141 chr2L 11563645 11563670 chr2L 11568849 11568874 copia 10 5204 1.5 3.5 2.5 2.9 5229 chr2L 11563645 intergenic not near genes chr2L 11566260 intergenic not near genes chr2L 11568874 intergenic not near genes chr2L_10_11565001 chr2L_11565001 RAL-318 142 chr2L 11598207 11598235 chr2L 11598348 11598374 12 138 0.5 1.5 1.0 6.0 167 chr2L 11598207 intron kek2 + chr2L 11598290 intron kek2 + chr2L 11598374 intron kek2 + chr2L_12_11595001 chr2L_11595001 RAL-318 143 chr2L 11612667 11612676 chr2L 11612755 11612764 5 88 6.5 3.0 4.8 0.9 97 chr2L 11612667 intron kek2 + chr2L 11612716 intron kek2 + chr2L 11612764 intron kek2 + chr2L_5_11610001 chr2L_11610001 RAL-318 144 chr2L 11612685 11612698 chr2L 11612754 11612786 7 85 3.5 3.0 3.2 1.7 101 chr2L 11612685 intron kek2 + chr2L 11612736 intron kek2 + chr2L 11612786 intron kek2 + chr2L_7_11610001 chr2L_11610001 RAL-318 145 chr2L 11688768 11688792 chr2L 11688845 11688866 5 73 2.5 2.5 2.5 1.4 98 chr2L 11688768 intergenic not near genes chr2L 11688817 intergenic not near genes chr2L 11688866 intergenic not near genes chr2L_5_11685001 chr2L_11685001 RAL-318 146 chr2L 11713505 11713537 chr2L 11720973 11721005 blood 6 7468 3.0 2.0 2.5 1.7 7500 chr2L 11713505 intergenic not near genes chr2L 11717255 intergenic not near genes chr2L 11721005 intergenic CR44143 + chr2L_6_11715001 chr2L_11715001 RAL-318 147 chr2L 11770601 11770622 chr2L 11770688 11770708 11 87 6.0 3.0 4.5 2.0 107 chr2L 11770601 intergenic not near genes chr2L 11770654 intergenic not near genes chr2L 11770708 intergenic not near genes chr2L_11_11770001 chr2L_11770001 RAL-318 148 chr2L 11854705 11854720 chr2L 11854880 11854895 7 175 3.5 4.0 3.8 1.5 190 chr2L 11854705 intron Pde1c - chr2L 11854800 intron Pde1c - chr2L 11854895 intron Pde1c - chr2L_7_11850001 chr2L_11850001 RAL-318 149 chr2L 11892550 11892817 chr2L 11892636 11892909 10 86 2.5 3.5 3.0 2.5 359 chr2L 11892550 intron Pde1c - chr2L 11892730 intron Pde1c - chr2L 11892909 intron Pde1c - chr2L_10_11890001 chr2L_11890001 RAL-318 150 chr2L 11941722 11941751 chr2L 11941838 11941867 9 115 2.0 1.5 1.8 3.2 145 chr2L 11941722 intergenic not near genes chr2L 11941794 intergenic not near genes chr2L 11941867 intergenic not near genes chr2L_9_11940001 chr2L_11940001 RAL-318 151 chr2L 12131478 12131492 chr2L 12131568 12131588 5 95 3.5 2.0 2.8 1.3 110 chr2L 12131478 intron rho-6 - chr2L 12131533 intron rho-6 - chr2L 12131588 intron rho-6 - chr2L_5_12130001 chr2L_12130001 RAL-318 152 chr2L 12305411 12305438 chr2L 12305499 12305526 9 88 2.0 2.0 2.0 3.0 115 chr2L 12305411 intron aret + chr2L 12305468 intron aret + chr2L 12305526 intron aret + chr2L_9_12305001 chr2L_12305001 RAL-318 153 chr2L 12490086 12490103 chr2L 12490225 12490242 5 139 0.0 0.0 0.0 5.0 156 chr2L 12490086 intron bun - chr2L 12490164 intron bun - chr2L 12490242 intron bun - chr2L_5_12490001 chr2L_12490001 RAL-318 154 chr2L 12529248 12529447 chr2L 12529381 12529523 8 83 1.0 1.5 1.2 3.6 275 chr2L 12529248 intron bun - chr2L 12529386 intron bun - chr2L 12529523 intron bun - chr2L_8_12525001 chr2L_12525001 RAL-318 155 chr2L 12558325 12558346 chr2L 12565454 12565475 HMS-Beagle 4 7129 0.5 1.0 0.8 2.2 7150 chr2L 12558325 intergenic not near genes chr2L 12561900 intergenic not near genes chr2L 12565475 intergenic not near genes chr2L_4_12560001 chr2L_12560001 RAL-318 156 chr2L 12731062 12731089 chr2L 12735829 12735853 F-element 4 4766 2.0 5.0 3.5 0.9 4791 chr2L 12731062 intron MRP + chr2L 12733458 intron MRP + chr2L 12735853 intron MRP + chr2L_4_12730001 chr2L_12730001 RAL-318 157 chr2L 12739172 12739192 chr2L 12743953 12743973 Doc 5 4781 4.5 3.5 4.0 1.0 4801 chr2L 12739172 exon MRP + chr2L 12741572 intron MRP + chr2L 12743973 intron MRP + chr2L_5_12740001 chr2L_12740001 RAL-318 158 chr2L 12739194 12739202 chr2L 12743948 12743983 Doc 5 4775 3.0 3.5 3.2 1.2 4789 chr2L 12739194 intron MRP + chr2L 12741588 intron MRP + chr2L 12743983 exon MRP + chr2L_5_12740001 chr2L_12740001 RAL-318 159 chr2L 12933849 12933881 chr2L 12941316 12941344 blood 10 7466 2.0 3.0 2.5 2.9 7495 chr2L 12933849 intergenic not near genes chr2L 12937596 intergenic not near genes chr2L 12941344 intergenic not near genes chr2L_10_12935001 chr2L_12935001 RAL-318 160 chr2L 12963793 12963817 chr2L 12963895 12963915 7 100 4.0 4.5 4.2 1.3 122 chr2L 12963793 intergenic not near genes chr2L 12963854 intergenic not near genes chr2L 12963915 intergenic not near genes chr2L_7_12960001 chr2L_12960001 RAL-318 161 chr2L 13328546 13328577 chr2L 13328911 13328942 6 365 3.0 0.0 1.5 2.4 396 chr2L 13328546 intron CG43778 - chr2L 13328744 intron CG43778 - chr2L 13328942 intron CG43778 - chr2L_6_13325001 chr2L_13325001 RAL-318 162 chr2L 13405660 13405680 chr2L 13410450 13410477 Doc 9 4796 4.0 2.0 3.0 2.2 4817 chr2L 13405660 exon CG7110 + chr2L 13408068 intron CG7110 + chr2L 13410477 intron CG7110 + chr2L_9_13405001 chr2L_13405001 RAL-318 163 chr2L 13462004 13462035 chr2L 13462138 13462169 10 133 2.0 1.0 1.5 4.0 165 chr2L 13462004 intron CG42784 + chr2L 13462086 intron CG42784 + chr2L 13462169 intron CG42784 + chr2L_10_13460001 chr2L_13460001 RAL-318 164 chr2L 13481464 13481467 chr2L 13482071 13482074 jockey 5 607 6.5 7.0 6.8 0.6 610 chr2L 13481464 intron CG42784 + chr2L 13481769 intron CG42784 + chr2L 13482074 intron CG42784 + chr2L_5_13480001 chr2L_13480001 RAL-318 165 chr2L 13699567 13699581 chr2L 13699631 13699654 7 74 3.0 2.5 2.8 1.8 87 chr2L 13699567 intron CG31814 - chr2L 13699610 intron CG31814 - chr2L 13699654 intron CG31814 - chr2L_7_13695001 chr2L_13695001 RAL-318 166 chr2L 13701886 13701913 chr2L 13701966 13701989 6 79 1.0 2.5 1.8 2.1 103 chr2L 13701886 intron CG31814 - chr2L 13701938 intron CG31814 - chr2L 13701989 intron CG31814 - chr2L_6_13700001 chr2L_13700001 RAL-318 167 chr2L 13761815 13761835 chr2L 13762908 13762942 Doc 7 1108 4.0 4.0 4.0 1.4 1127 chr2L 13761815 intron TM9SF4 + chr2L 13762378 intron TM9SF4 + chr2L 13762942 intron TM9SF4 + chr2L_7_13760001 chr2L_13760001 RAL-318 168 chr2L 13809721 13809755 chr2L 13810003 13810037 10 285 25.5 6.5 16.0 0.6 316 chr2L 13809721 3` UTR,3` UTR CAH1 +,adat - chr2L 13809879 3` UTR,3` UTR CAH1 +,adat - chr2L 13810037 3` UTR adat - chr2L_10_13805001 chr2L_13805001 RAL-318 169 chr2L 13853085 13853116 chr2L 13862235 13862266 roo 8 9150 2.5 1.0 1.8 2.9 9181 chr2L 13853085 intron CenG1A + chr2L 13857676 intron CenG1A + chr2L 13862266 intron CenG1A + chr2L_8_13855001 chr2L_13855001 RAL-318 170 chr2L 13913596 13913605 chr2L 13913709 13913718 4 113 5.5 6.0 5.8 0.6 122 chr2L 13913596 intergenic not near genes chr2L 13913657 intergenic not near genes chr2L 13913718 intergenic not near genes chr2L_4_13910001 chr2L_13910001 RAL-318 171 chr2L 14068612 14068634 chr2L 14068685 14068692 7 68 2.5 1.0 1.8 2.5 80 chr2L 14068612 intron nAChRalpha5 + chr2L 14068652 intron nAChRalpha5 + chr2L 14068692 intron nAChRalpha5 + chr2L_7_14065001 chr2L_14065001 RAL-318 172 chr2L 14118661 14118686 chr2L 14118760 14118785 4 98 2.5 2.0 2.2 1.2 124 chr2L 14118661 intergenic not near genes chr2L 14118723 intergenic not near genes chr2L 14118785 intergenic not near genes chr2L_4_14115001 chr2L_14115001 RAL-318 173 chr2L 14159160 14159181 chr2L 14159241 14159260 6 79 1.5 2.0 1.8 2.1 100 chr2L 14159160 3` UTR CG17341 + chr2L 14159210 3` UTR CG17341 + chr2L 14159260 3` UTR CG17341 + chr2L_6_14155001 chr2L_14155001 RAL-318 174 chr2L 14180065 14180084 chr2L 14180141 14180160 4 76 4.5 2.5 3.5 0.9 95 chr2L 14180065 intron CG43333 - chr2L 14180112 intron CG43333 - chr2L 14180160 intron CG43333 - chr2L_4_14180001 chr2L_14180001 RAL-318 175 chr2L 14271115 14271149 chr2L 14271195 14271230 10 79 3.5 1.5 2.5 2.9 115 chr2L 14271115 intron wb + chr2L 14271172 intron wb + chr2L 14271230 intron wb + chr2L_10_14270001 chr2L_14270001 RAL-318 176 chr2L 14374782 14374802 chr2L 14374873 14374893 7 90 0.5 0.0 0.2 5.8 111 chr2L 14374782 intergenic not near genes chr2L 14374838 intergenic not near genes chr2L 14374893 intergenic not near genes chr2L_7_14370001 chr2L_14370001 RAL-318 177 chr2L 14488982 14489013 chr2L 14489065 14489096 4 82 2.5 3.0 2.8 1.1 114 chr2L 14488982 intergenic not near genes chr2L 14489039 intergenic not near genes chr2L 14489096 intergenic not near genes chr2L_4_14485001 chr2L_14485001 RAL-318 178 chr2L 14555151 14555274 chr2L 14555230 14555353 5 79 0.0 0.0 0.0 5.0 202 chr2L 14555151 intergenic not near genes chr2L 14555252 intergenic not near genes chr2L 14555353 intergenic not near genes chr2L_5_14555001 chr2L_14555001 RAL-318 179 chr2L 14564203 14564229 chr2L 14564270 14564277 8 62 0.0 1.0 0.5 5.3 74 chr2L 14564203 intergenic CG3473 - chr2L 14564240 intergenic not near genes chr2L 14564277 intergenic not near genes chr2L_8_14560001 chr2L_14560001 RAL-318 180 chr2L 14601976 14602002 chr2L 14602060 14602085 13 84 4.5 3.0 3.8 2.7 109 chr2L 14601976 exon osp - chr2L 14602030 intron osp - chr2L 14602085 intron osp - chr2L_13_14600001 chr2L_14600001 RAL-318 181 chr2L 14678355 14678373 chr2L 14678462 14678479 9 107 3.5 3.0 3.2 2.1 124 chr2L 14678355 intron osp - chr2L 14678417 intron osp - chr2L 14678479 intron osp - chr2L_9_14675001 chr2L_14675001 RAL-318 182 chr2L 14707209 14707235 chr2L 14707328 14707354 15 117 3.5 3.0 3.2 3.6 145 chr2L 14707209 intergenic not near genes chr2L 14707282 intergenic not near genes chr2L 14707354 intergenic not near genes chr2L_15_14705001 chr2L_14705001 RAL-318 183 chr2L 14706735 14706743 chr2L 14708997 14709025 4 2267 3.5 7.5 5.5 0.6 2290 chr2L 14706735 intergenic not near genes chr2L 14707880 intergenic not near genes chr2L 14709025 intergenic not near genes chr2L_4_14705001 chr2L_14705001 RAL-318 184 chr2L 14778458 14778486 chr2L 14778623 14778643 6 164 3.0 2.5 2.8 1.6 185 chr2L 14778458 intergenic not near genes chr2L 14778550 intergenic not near genes chr2L 14778643 intergenic not near genes chr2L_6_14775001 chr2L_14775001 RAL-318 185 chr2L 14778815 14778840 chr2L 14779095 14779109 6 280 2.0 7.0 4.5 1.1 294 chr2L 14778815 intergenic not near genes chr2L 14778962 intergenic not near genes chr2L 14779109 intergenic not near genes chr2L_6_14775001 chr2L_14775001 RAL-318 186 chr2L 14803879 14803912 chr2L 14809082 14809113 copia 9 5202 3.0 5.0 4.0 1.8 5234 chr2L 14803879 intergenic not near genes chr2L 14806496 intergenic not near genes chr2L 14809113 intergenic not near genes chr2L_9_14805001 chr2L_14805001 RAL-318 187 chr2L 14889951 14889988 chr2L 14890376 14890413 jockey 16 422 4.5 2.0 3.2 3.8 462 chr2L 14889951 intergenic not near genes chr2L 14890182 intergenic not near genes chr2L 14890413 intergenic not near genes chr2L_16_14890001 chr2L_14890001 RAL-318 188 chr2L 14945411 14945444 chr2L 14948281 14948312 9 2869 0.5 4.0 2.2 2.8 2901 chr2L 14945411 intron CG42313 - chr2L 14946862 intron CG42313 - chr2L 14948312 intron CG42313 - chr2L_9_14945001 chr2L_14945001 RAL-318 189 chr2L 14968547 14968572 chr2L 14968642 14968667 9 93 0.0 1.5 0.8 5.0 120 chr2L 14968547 intron CG42313 - chr2L 14968607 intron CG42313 - chr2L 14968667 intron CG42313 - chr2L_9_14965001 chr2L_14965001 RAL-318 190 chr2L 14984380 14984402 chr2L 14991982 14992004 opus 7 7601 3.0 2.5 2.8 1.8 7624 chr2L 14984380 intron mol - chr2L 14988192 intron mol - chr2L 14992004 intron mol - chr2L_7_14985001 chr2L_14985001 RAL-318 191 chr2L 15021441 15021454 chr2L 15021517 15021530 5 76 3.5 2.0 2.8 1.3 89 chr2L 15021441 intron GABA-B-R1 + chr2L 15021486 intron GABA-B-R1 + chr2L 15021530 intron GABA-B-R1 + chr2L_5_15020001 chr2L_15020001 RAL-318 192 chr2L 15044712 15044741 chr2L 15044788 15044817 4 76 0.5 0.5 0.5 2.7 105 chr2L 15044712 intergenic ck - chr2L 15044764 intergenic ck - chr2L 15044817 intergenic ck - chr2L_4_15040001 chr2L_15040001 RAL-318 193 chr2L 15087757 15087771 chr2L 15087867 15087881 4 110 2.0 3.0 2.5 1.1 124 chr2L 15087757 intron CG15270 + chr2L 15087819 intron CG15270 + chr2L 15087881 intron CG15270 + chr2L_4_15085001 chr2L_15085001 RAL-318 194 chr2L 15285372 15285404 chr2L 15285472 15285506 12 101 7.0 5.0 6.0 1.7 134 chr2L 15285372 exon CG15263 + chr2L 15285439 exon CG15263 + chr2L 15285506 exon CG15263 + chr2L_12_15285001 chr2L_15285001 RAL-318 195 chr2L 15466486 15466506 chr2L 15466601 15466622 5 112 4.5 1.5 3.0 1.2 136 chr2L 15466486 intergenic not near genes chr2L 15466554 intergenic not near genes chr2L 15466622 intergenic not near genes chr2L_5_15465001 chr2L_15465001 RAL-318 196 chr2L 15514322 15514333 chr2L 15514406 15514406 5 81 6.5 3.5 5.0 0.8 84 chr2L 15514322 intergenic not near genes chr2L 15514364 intergenic not near genes chr2L 15514406 intergenic not near genes chr2L_5_15510001 chr2L_15510001 RAL-318 197 chr2L 15556844 15556864 chr2L 15556937 15556957 5 93 3.0 4.0 3.5 1.1 113 chr2L 15556844 intron kek3 + chr2L 15556900 intron kek3 + chr2L 15556957 intron kek3 + chr2L_5_15555001 chr2L_15555001 RAL-318 198 chr2L 15586411 15586430 chr2L 15593462 15593482 297 5 7052 2.5 1.5 2.0 1.7 7071 chr2L 15586411 intergenic not near genes chr2L 15589946 intergenic not near genes chr2L 15593482 intergenic not near genes chr2L_5_15585001 chr2L_15585001 RAL-318 199 chr2L 15906184 15906214 chr2L 15906273 15906281 10 85 2.5 3.5 3.0 2.5 97 chr2L 15906184 intron beat-Ib - chr2L 15906232 intron beat-Ib - chr2L 15906281 intron beat-Ib - chr2L_10_15905001 chr2L_15905001 RAL-318 200 chr2L 15956033 15956058 chr2L 15957488 15957518 hobo 6 1464 1.0 1.5 1.2 2.7 1485 chr2L 15956033 intron beat-Ib - chr2L 15956776 intron beat-Ib - chr2L 15957518 intron beat-Ib - chr2L_6_15955001 chr2L_15955001 RAL-318 201 chr2L 15971985 15971998 chr2L 15972083 15972096 7 98 0.0 2.5 1.2 3.2 111 chr2L 15971985 intergenic not near genes chr2L 15972040 intergenic not near genes chr2L 15972096 intergenic not near genes chr2L_7_15970001 chr2L_15970001 RAL-318 202 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 8 145889 16.0 31.0 23.5 0.3 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_8_16140001 chr2L_16140001 RAL-318 203 chr2L 16081925 16081941 chr2L 16082024 16082026 7 97 4.0 3.0 3.5 1.6 101 chr2L 16081925 intergenic beat-Ia + chr2L 16081976 intergenic beat-Ia + chr2L 16082026 intergenic beat-Ia + chr2L_7_16080001 chr2L_16080001 RAL-318 204 chr2L 16123484 16123525 chr2L 16123566 16123603 7 74 2.5 2.0 2.2 2.2 119 chr2L 16123484 intergenic not near genes chr2L 16123544 intergenic not near genes chr2L 16123603 intergenic not near genes chr2L_7_16120001 chr2L_16120001 RAL-318 205 chr2L 9084336 9084340 chr2L 16217660 16217660 6 7133321 15.5 31.0 23.2 0.2 7133324 chr2L 9084336 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_6_12650001 chr2L_12650001 RAL-318 206 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 4 145889 16.0 31.0 23.5 0.2 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_4_16140001 chr2L_16140001 RAL-318 207 chr2L 16280254 16280285 chr2L 16281425 16281437 1360 8 1168 2.5 3.0 2.8 2.1 1183 chr2L 16280254 intron crp - chr2L 16280846 intron crp - chr2L 16281437 intron crp - chr2L_8_16280001 chr2L_16280001 RAL-318 208 chr2L 16375390 16375419 chr2L 16375481 16375509 6 91 3.0 0.0 1.5 2.4 119 chr2L 16375390 intergenic not near genes chr2L 16375450 intergenic not near genes chr2L 16375509 intergenic not near genes chr2L_6_16375001 chr2L_16375001 RAL-318 209 chr2L 16419479 16419502 chr2L 16419560 16419584 8 82 3.5 4.0 3.8 1.7 105 chr2L 16419479 intron CG5888 - chr2L 16419532 intron CG5888 - chr2L 16419584 intron CG5888 - chr2L_8_16415001 chr2L_16415001 RAL-318 210 chr2L 16434107 16434129 chr2L 16434189 16434210 4 82 2.0 0.5 1.2 1.8 103 chr2L 16434107 intron CG5888 - chr2L 16434158 intron CG5888 - chr2L 16434210 intron CG5888 - chr2L_4_16430001 chr2L_16430001 RAL-318 211 chr2L 16572214 16572239 chr2L 16572302 16572332 7 92 1.0 1.0 1.0 3.5 118 chr2L 16572214 intron CG42389 + chr2L 16572273 intron CG42389 + chr2L 16572332 intron CG42389 + chr2L_7_16570001 chr2L_16570001 RAL-318 212 chr2L 16616587 16616612 chr2L 16616666 16616696 7 83 6.5 5.0 5.8 1.0 109 chr2L 16616587 intron CG42389 + chr2L 16616642 intron CG42389 + chr2L 16616696 intron CG42389 + chr2L_7_16615001 chr2L_16615001 RAL-318 213 chr2L 16693935 16694134 chr2L 16694004 16694220 5 78 9.0 3.5 6.2 0.7 285 chr2L 16693935 intron grp + chr2L 16694078 intron grp + chr2L 16694220 intron grp + chr2L_5_16690001 chr2L_16690001 RAL-318 214 chr2L 16697076 16697084 chr2L 16697269 16697277 4 193 2.0 1.0 1.5 1.6 201 chr2L 16697076 intron grp + chr2L 16697176 intron grp + chr2L 16697277 intron grp + chr2L_4_16695001 chr2L_16695001 RAL-318 215 chr2L 16818843 16818855 chr2L 16818918 16818931 4 76 1.0 0.0 0.5 2.7 88 chr2L 16818843 intron,intron CG13280 -,mdy + chr2L 16818887 intron,intron CG13280 -,mdy + chr2L 16818931 intron,intron CG13280 -,mdy + chr2L_4_16815001 chr2L_16815001 RAL-318 216 chr2L 16939993 16940013 chr2L 16940070 16940087 5 72 1.5 4.0 2.8 1.3 94 chr2L 16939993 intergenic not near genes chr2L 16940040 intergenic not near genes chr2L 16940087 intergenic not near genes chr2L_5_16940001 chr2L_16940001 RAL-318 217 chr2L 16958104 16958126 chr2L 16962892 16962914 Doc 5 4788 4.0 2.0 3.0 1.2 4810 chr2L 16958104 intergenic not near genes chr2L 16960509 intergenic not near genes chr2L 16962914 intergenic not near genes chr2L_5_16960001 chr2L_16960001 RAL-318 218 chr2L 17000119 17000154 chr2L 17000240 17000276 11 120 4.0 4.0 4.0 2.2 157 chr2L 17000119 intergenic not near genes chr2L 17000198 intergenic not near genes chr2L 17000276 intergenic not near genes chr2L_11_17000001 chr2L_17000001 RAL-318 219 chr2L 17087379 17087393 chr2L 17087497 17087510 6 114 5.5 0.0 2.8 1.6 131 chr2L 17087379 intergenic CG12620 + chr2L 17087444 intergenic CG12620 + chr2L 17087510 intergenic CG12620 + chr2L_6_17085001 chr2L_17085001 RAL-318 220 chr2L 17120844 17120858 chr2L 17120922 17120937 4 76 3.0 3.0 3.0 1.0 93 chr2L 17120844 intergenic not near genes chr2L 17120890 intergenic not near genes chr2L 17120937 intergenic not near genes chr2L_4_17120001 chr2L_17120001 RAL-318 221 chr2L 17158732 17158753 chr2L 17158834 17158834 8 99 3.0 2.0 2.5 2.3 102 chr2L 17158732 5` UTR,exon CG34106 +,beat-IIIa + chr2L 17158783 intron,intron CG34106 +,beat-IIIa + chr2L 17158834 intron,intron CG34106 +,beat-IIIa + chr2L_8_17155001 chr2L_17155001 RAL-318 222 chr2L 17167567 17167596 chr2L 17167808 17167816 pogo 4 235 0.5 0.0 0.2 3.3 249 chr2L 17167567 intron,intron CG34106 +,beat-IIIa + chr2L 17167692 intron,intron CG34106 +,beat-IIIa + chr2L 17167816 intron,intron CG34106 +,beat-IIIa + chr2L_4_17165001 chr2L_17165001 RAL-318 223 chr2L 17250402 17250424 chr2L 17250485 17250519 5 93 1.0 0.5 0.8 2.8 117 chr2L 17250402 intron beat-IIIc - chr2L 17250460 intron beat-IIIc - chr2L 17250519 intron beat-IIIc - chr2L_5_17250001 chr2L_17250001 RAL-318 224 chr2L 17261211 17261245 chr2L 17261302 17261318 5 87 0.5 0.0 0.2 4.2 107 chr2L 17261211 intergenic beat-IIIc - chr2L 17261264 intergenic not near genes chr2L 17261318 intergenic not near genes chr2L_5_17260001 chr2L_17260001 RAL-318 225 chr2L 17271605 17271632 chr2L 17271694 17271718 8 88 5.0 5.0 5.0 1.3 113 chr2L 17271605 intergenic not near genes chr2L 17271662 intergenic not near genes chr2L 17271718 intergenic not near genes chr2L_8_17270001 chr2L_17270001 RAL-318 226 chr2L 17273193 17273228 chr2L 17277971 17278011 F-element 10 4777 4.5 5.0 4.8 1.7 4818 chr2L 17273193 intergenic not near genes chr2L 17275602 intergenic not near genes chr2L 17278011 intergenic not near genes chr2L_10_17275001 chr2L_17275001 RAL-318 227 chr2L 17327912 17327929 chr2L 17327997 17328015 8 86 2.0 2.0 2.0 2.7 103 chr2L 17327912 intergenic not near genes chr2L 17327964 intergenic not near genes chr2L 17328015 intergenic not near genes chr2L_8_17325001 chr2L_17325001 RAL-318 228 chr2L 17741147 17741181 chr2L 17741231 17741265 5 82 1.5 1.5 1.5 2.0 118 chr2L 17741147 intron CadN - chr2L 17741206 intron CadN - chr2L 17741265 intron CadN - chr2L_5_17740001 chr2L_17740001 RAL-318 229 chr2L 17906764 17906780 chr2L 17906841 17906863 5 81 2.0 1.0 1.5 2.0 99 chr2L 17906764 intergenic not near genes chr2L 17906814 intergenic not near genes chr2L 17906863 intergenic not near genes chr2L_5_17905001 chr2L_17905001 RAL-318 230 chr2L 17911960 17911987 chr2L 17914138 17914165 pogo 5 2178 5.5 1.5 3.5 1.1 2205 chr2L 17911960 intergenic not near genes chr2L 17913062 intergenic not near genes chr2L 17914165 intergenic CG43271 - chr2L_5_17910001 chr2L_17910001 RAL-318 231 chr2L 18039871 18039906 chr2L 18039950 18039986 11 76 0.5 2.5 1.5 4.4 115 chr2L 18039871 intron rdo + chr2L 18039928 intron rdo + chr2L 18039986 intron rdo + chr2L_11_18035001 chr2L_18035001 RAL-318 232 chr2L 18040822 18040847 chr2L 18040907 18040933 9 85 2.0 4.0 3.0 2.2 111 chr2L 18040822 intron rdo + chr2L 18040878 intron rdo + chr2L 18040933 intron rdo + chr2L_9_18040001 chr2L_18040001 RAL-318 233 chr2L 18051882 18051905 chr2L 18061029 18061050 roo 8 9146 1.5 2.5 2.0 2.7 9168 chr2L 18051882 intron rdo + chr2L 18056466 intron rdo + chr2L 18061050 intron rdo + chr2L_8_18055001 chr2L_18055001 RAL-318 234 chr2L 18079815 18079843 chr2L 18079901 18079929 8 84 1.5 4.5 3.0 2.0 114 chr2L 18079815 intron Arr1 + chr2L 18079872 intron Arr1 + chr2L 18079929 intron Arr1 + chr2L_8_18075001 chr2L_18075001 RAL-318 235 chr2L 18111253 18111259 chr2L 18111344 18111350 4 91 4.5 3.5 4.0 0.8 97 chr2L 18111253 intergenic not near genes chr2L 18111302 intergenic not near genes chr2L 18111350 intergenic not near genes chr2L_4_18110001 chr2L_18110001 RAL-318 236 chr2L 18153179 18153205 chr2L 18153403 18153424 6 223 2.5 3.0 2.8 1.6 245 chr2L 18153179 5` UTR CG17681 + chr2L 18153302 5` UTR CG17681 + chr2L 18153424 exon CG17681 + chr2L_6_18150001 chr2L_18150001 RAL-318 237 chr2L 18197481 18197506 chr2L 18197559 18197585 8 77 4.5 2.0 3.2 1.9 104 chr2L 18197481 intron CG42750 - chr2L 18197533 intron CG42750 - chr2L 18197585 intron CG42750 - chr2L_8_18195001 chr2L_18195001 RAL-318 238 chr2L 18235069 18235098 chr2L 18235201 18235228 6 130 2.0 6.0 4.0 1.2 159 chr2L 18235069 intron CG42750 - chr2L 18235148 intron CG42750 - chr2L 18235228 intron CG42750 - chr2L_6_18235001 chr2L_18235001 RAL-318 239 chr2L 18264065 18264094 chr2L 18264142 18264146 4 71 1.5 1.5 1.5 1.6 81 chr2L 18264065 intron CG42750 - chr2L 18264106 intron CG42750 - chr2L 18264146 intron CG42750 - chr2L_4_18260001 chr2L_18260001 RAL-318 240 chr2L 18291531 18291563 chr2L 18291629 18291660 4 98 1.0 0.5 0.8 2.2 129 chr2L 18291531 intergenic CG43362 -,CR44693 +,CR44696 - chr2L 18291596 intergenic CR44693 +,CG43362 -,CR44696 - chr2L 18291660 intergenic CR44693 +,CG43362 -,CR44696 - chr2L_4_18290001 chr2L_18290001 RAL-318 241 chr2L 18342177 18342194 chr2L 18342259 18342276 8 82 7.0 4.0 5.5 1.2 99 chr2L 18342177 intron Fas3 + chr2L 18342226 intron Fas3 + chr2L 18342276 intron Fas3 + chr2L_8_18340001 chr2L_18340001 RAL-318 242 chr2L 18369364 18369386 chr2L 18369454 18369474 7 89 3.5 4.5 4.0 1.4 110 chr2L 18369364 intron Fas3 + chr2L 18369419 intron Fas3 + chr2L 18369474 intron Fas3 + chr2L_7_18365001 chr2L_18365001 RAL-318 243 chr2L 18369387 18369394 chr2L 18369453 18369473 5 83 3.0 4.5 3.8 1.0 86 chr2L 18369387 intron Fas3 + chr2L 18369430 intron Fas3 + chr2L 18369473 intron Fas3 + chr2L_5_18365001 chr2L_18365001 RAL-318 244 chr2L 18400208 18400238 chr2L 18400460 18400488 8 249 2.5 3.0 2.8 2.1 280 chr2L 18400208 intergenic CR44486 + chr2L 18400348 intergenic CR44486 + chr2L 18400488 5` UTR CR44486 + chr2L_8_18400001 chr2L_18400001 RAL-318 245 chr2L 18408024 18408053 chr2L 18412808 18412837 Doc 6 4784 1.5 0.5 1.0 3.0 4813 chr2L 18408024 intergenic not near genes chr2L 18410430 intergenic not near genes chr2L 18412837 intergenic not near genes chr2L_6_18410001 chr2L_18410001 RAL-318 246 chr2L 18584764 18584780 chr2L 18584837 18584865 5 82 0.5 3.5 2.0 1.7 101 chr2L 18584764 intron Pde11 - chr2L 18584814 intron Pde11 - chr2L 18584865 intron Pde11 - chr2L_5_18580001 chr2L_18580001 RAL-318 247 chr2L 18639979 18640012 chr2L 18640571 18640575 4 584 3.0 2.5 2.8 1.1 596 chr2L 18639979 intron MESR3 + chr2L 18640277 intron MESR3 + chr2L 18640575 intron MESR3 + chr2L_4_18640001 chr2L_18640001 RAL-318 248 chr2L 18755920 18755944 chr2L 18756151 18756175 11 230 6.0 3.0 4.5 2.0 255 chr2L 18755920 intergenic not near genes chr2L 18756048 intergenic not near genes chr2L 18756175 intergenic not near genes chr2L_11_18755001 chr2L_18755001 RAL-318 249 chr2L 18812563 18812588 chr2L 18812826 18812851 6 263 4.0 5.0 4.5 1.1 288 chr2L 18812563 intergenic CG17325 +,CG42305 + chr2L 18812707 5` UTR,5` UTR CG17325 +,CG42305 + chr2L 18812851 5` UTR,5` UTR CG17325 +,CG42305 + chr2L_6_18810001 chr2L_18810001 RAL-318 250 chr2L 18824348 18824377 chr2L 18827253 18827270 5 2895 21.5 16.5 19.0 0.2 2922 chr2L 18824348 exon CG17323 + chr2L 18825809 exon CG17323 + chr2L 18827270 intron CG17322 + chr2L_5_18825001 chr2L_18825001 RAL-318 251 chr2L 18894761 18894774 chr2L 18894899 18894920 4 139 5.0 3.0 4.0 0.8 159 chr2L 18894761 5` UTR CR44737 + chr2L 18894840 5` UTR CR44737 + chr2L 18894920 5` UTR CR44737 + chr2L_4_18890001 chr2L_18890001 RAL-318 252 chr2L 18898405 18898426 chr2L 18898480 18898508 7 79 1.0 0.5 0.8 3.9 103 chr2L 18898405 intergenic not near genes chr2L 18898456 intergenic not near genes chr2L 18898508 intergenic not near genes chr2L_7_18895001 chr2L_18895001 RAL-318 253 chr2L 18995441 18995464 chr2L 18995516 18995524 8 76 1.5 1.5 1.5 3.2 83 chr2L 18995441 intron CG10650 - chr2L 18995482 intron CG10650 - chr2L 18995524 intron CG10650 - chr2L_8_18995001 chr2L_18995001 RAL-318 254 chr2L 19024096 19024097 chr2L 21768291 21768291 6 2744194 12.0 19.0 15.5 0.4 2744195 chr2L 19024096 3` UTR CR43700 - chr2L 20396194 intron CG10947 - chr2L 21768291 intron CG31612 - chr2L_6_20395001 chr2L_20395001 RAL-318 255 chr2L 19077296 19077321 chr2L 19078735 19078762 8 1439 3.5 2.0 2.8 2.1 1466 chr2L 19077296 3` UTR CG10700 - chr2L 19078029 exon CG10700 - chr2L 19078762 exon CG10700 - chr2L_8_19075001 chr2L_19075001 RAL-318 256 chr2L 19211246 19211278 chr2L 19211356 19211388 8 109 2.5 2.0 2.2 2.5 142 chr2L 19211246 intergenic not near genes chr2L 19211317 intergenic not near genes chr2L 19211388 intergenic not near genes chr2L_8_19210001 chr2L_19210001 RAL-318 257 chr2L 19218481 19218511 chr2L 19218560 19218588 5 79 3.0 2.5 2.8 1.3 107 chr2L 19218481 intergenic CR44189 + chr2L 19218534 intergenic CR44189 + chr2L 19218588 intergenic CR44189 + chr2L_5_19215001 chr2L_19215001 RAL-318 258 chr2L 19246827 19246851 chr2L 19246907 19246920 5 78 3.0 0.5 1.8 1.8 93 chr2L 19246827 intergenic not near genes chr2L 19246874 intergenic not near genes chr2L 19246920 intergenic not near genes chr2L_5_19245001 chr2L_19245001 RAL-318 259 chr2L 19357548 19357568 chr2L 19357636 19357658 5 89 3.5 3.5 3.5 1.1 110 chr2L 19357548 intron dnt - chr2L 19357603 intron dnt - chr2L 19357658 intron dnt - chr2L_5_19355001 chr2L_19355001 RAL-318 260 chr2L 19367509 19367520 chr2L 19367589 19367600 4 80 3.5 6.5 5.0 0.7 91 chr2L 19367509 intergenic not near genes chr2L 19367554 intergenic not near genes chr2L 19367600 intergenic not near genes chr2L_4_19365001 chr2L_19365001 RAL-318 261 chr2L 19367522 19367528 chr2L 19367578 19367608 9 77 2.5 4.5 3.5 2.0 86 chr2L 19367522 intergenic not near genes chr2L 19367565 intergenic not near genes chr2L 19367608 intergenic not near genes chr2L_9_19365001 chr2L_19365001 RAL-318 262 chr2L 19374941 19374960 chr2L 19375066 19375085 8 124 1.0 9.0 5.0 1.3 144 chr2L 19374941 intergenic not near genes chr2L 19375013 intergenic not near genes chr2L 19375085 intergenic not near genes chr2L_8_19375001 chr2L_19375001 RAL-318 263 chr2L 19378339 19378374 chr2L 19378421 19378457 11 77 2.5 2.0 2.2 3.4 118 chr2L 19378339 intergenic not near genes chr2L 19378398 intergenic not near genes chr2L 19378457 intergenic not near genes chr2L_11_19375001 chr2L_19375001 RAL-318 264 chr2L 19407721 19407731 chr2L 19407918 19407927 4 196 6.0 2.5 4.2 0.8 206 chr2L 19407721 intron Pax - chr2L 19407824 intron Pax - chr2L 19407927 intron Pax - chr2L_4_19405001 chr2L_19405001 RAL-318 265 chr2L 19441074 19441089 chr2L 19441151 19441166 5 77 4.0 4.5 4.2 1.0 92 chr2L 19441074 intron CG10237 - chr2L 19441120 intron CG10237 - chr2L 19441166 5` UTR CG10237 - chr2L_5_19440001 chr2L_19440001 RAL-318 266 chr2L 19464475 19464496 chr2L 19464551 19464572 4 76 5.5 5.5 5.5 0.6 97 chr2L 19464475 5` UTR tj + chr2L 19464524 5` UTR tj + chr2L 19464572 5` UTR tj + chr2L_4_19460001 chr2L_19460001 RAL-318 267 chr2L 19544624 19544626 chr2L 19544662 19544672 5 55 2.5 3.0 2.8 1.3 48 chr2L 19544624 exon ref(2)P + chr2L 19544648 exon ref(2)P + chr2L 19544672 exon ref(2)P + chr2L_5_19540001 chr2L_19540001 RAL-318 268 chr2L 19562545 19562562 chr2L 19562625 19562642 5 80 0.0 7.5 3.8 1.0 97 chr2L 19562545 intron Tep5 + chr2L 19562594 intron Tep5 + chr2L 19562642 exon Tep5 + chr2L_5_19560001 chr2L_19560001 RAL-318 269 chr2L 19597273 19597305 chr2L 19597506 19597537 8 229 5.5 3.0 4.2 1.5 264 chr2L 19597273 intron Lar + chr2L 19597405 intron Lar + chr2L 19597537 intron Lar + chr2L_8_19595001 chr2L_19595001 RAL-318 270 chr2L 19620093 19620132 chr2L 19621080 19621119 jockey 10 988 3.0 2.5 2.8 2.6 1026 chr2L 19620093 intron Lar + chr2L 19620606 intron Lar + chr2L 19621119 intron Lar + chr2L_10_19620001 chr2L_19620001 RAL-318 271 chr2L 19652570 19652603 chr2L 19674006 19674039 opus 4 21429 4.0 2.0 3.0 1.0 21469 chr2L 19652570 intron Lar + chr2L 19663304 intron Lar + chr2L 19674039 intron Lar + chr2L_4_19660001 chr2L_19660001 RAL-318 272 chr2L 19703541 19703567 chr2L 19712676 19712699 roo 7 9135 3.0 4.0 3.5 1.6 9158 chr2L 19703541 intron Lar + chr2L 19708120 intron Lar + chr2L 19712699 intron Lar + chr2L_7_19705001 chr2L_19705001 RAL-318 273 chr2L 19737370 19737387 chr2L 19740820 19740856 1360 6 3462 4.0 2.0 3.0 1.5 3486 chr2L 19737370 intergenic Nf-YB + chr2L 19739113 intergenic not near genes chr2L 19740856 intergenic not near genes chr2L_6_19735001 chr2L_19735001 RAL-318 274 chr2L 19762812 19762833 chr2L 19763052 19763075 pogo 4 241 2.0 3.5 2.8 1.1 263 chr2L 19762812 5` UTR fbp - chr2L 19762944 intron fbp - chr2L 19763075 intron fbp - chr2L_4_19760001 chr2L_19760001 RAL-318 275 chr2L 19837279 19837305 chr2L 19837359 19837383 12 78 7.0 4.0 5.5 1.8 104 chr2L 19837279 intron sick + chr2L 19837331 intron sick + chr2L 19837383 intron sick + chr2L_12_19835001 chr2L_19835001 RAL-318 276 chr2L 19901487 19901516 chr2L 19901590 19901618 5 99 1.5 1.0 1.2 2.3 131 chr2L 19901487 intron sick + chr2L 19901552 intron sick + chr2L 19901618 intron sick + chr2L_5_19900001 chr2L_19900001 RAL-318 277 chr2L 19988524 19988547 chr2L 19988670 19988694 8 145 2.0 4.0 3.0 2.0 170 chr2L 19988524 intron CG43861 - chr2L 19988609 intron CG43861 - chr2L 19988694 intron CG43861 - chr2L_8_19985001 chr2L_19985001 RAL-318 278 chr2L 20005879 20005900 chr2L 20010955 20010976 flea 4 5076 1.0 1.5 1.2 1.8 5097 chr2L 20005879 intron CG43861 - chr2L 20008428 intron CG43861 - chr2L 20010976 intron CG43861 - chr2L_4_20005001 chr2L_20005001 RAL-318 279 chr2L 20124326 20124359 chr2L 20124404 20124411 5 69 1.0 0.5 0.8 2.8 85 chr2L 20124326 intergenic not near genes chr2L 20124368 intergenic not near genes chr2L 20124411 intergenic not near genes chr2L_5_20120001 chr2L_20120001 RAL-318 280 chr2L 20269608 20269629 chr2L 20269832 20269853 4 224 4.5 3.0 3.8 0.8 245 chr2L 20269608 intergenic not near genes chr2L 20269730 intergenic not near genes chr2L 20269853 intergenic not near genes chr2L_4_20265001 chr2L_20265001 RAL-318 281 chr2L 20296507 20296538 chr2L 20296587 20296619 13 80 3.0 4.0 3.5 2.9 112 chr2L 20296507 intergenic CR43414 - chr2L 20296563 intergenic CR43414 - chr2L 20296619 intergenic CR43414 - chr2L_13_20295001 chr2L_20295001 RAL-318 282 chr2L 20298828 20298850 chr2L 20298911 20298922 5 79 1.5 4.5 3.0 1.2 94 chr2L 20298828 intergenic not near genes chr2L 20298875 intergenic not near genes chr2L 20298922 intergenic not near genes chr2L_5_20295001 chr2L_20295001 RAL-318 283 chr2L 20299417 20299441 chr2L 20299539 20299562 7 122 1.0 7.5 4.2 1.3 145 chr2L 20299417 intergenic not near genes chr2L 20299490 intergenic not near genes chr2L 20299562 intergenic not near genes chr2L_7_20295001 chr2L_20295001 RAL-318 284 chr2L 20303173 20303192 chr2L 20310640 20310660 blood 4 7468 1.5 1.5 1.5 1.6 7487 chr2L 20303173 intergenic not near genes chr2L 20306916 intergenic not near genes chr2L 20310660 intergenic not near genes chr2L_4_20305001 chr2L_20305001 RAL-318 285 chr2L 20310881 20310921 chr2L 20310961 20310999 5 79 1.0 2.5 1.8 1.8 118 chr2L 20310881 intergenic spir + chr2L 20310940 intergenic spir + chr2L 20310999 intergenic spir + chr2L_5_20310001 chr2L_20310001 RAL-318 286 chr2L 20424071 20424076 chr2L 20424143 20424161 4 80 6.5 8.0 7.2 0.5 90 chr2L 20424071 intron CG15130 - chr2L 20424116 intron CG15130 - chr2L 20424161 intron CG15130 - chr2L_4_20420001 chr2L_20420001 RAL-318 287 chr2L 20494785 20494795 chr2L 20494946 20494956 5 161 4.0 4.0 4.0 1.0 171 chr2L 20494785 intergenic CG34007 + chr2L 20494870 intergenic CG34007 + chr2L 20494956 intergenic CG34007 + chr2L_5_20490001 chr2L_20490001 RAL-318 288 chr2L 20498688 20498706 chr2L 20498787 20498805 5 99 1.5 4.5 3.0 1.2 117 chr2L 20498688 intergenic not near genes chr2L 20498746 intergenic not near genes chr2L 20498805 intergenic not near genes chr2L_5_20495001 chr2L_20495001 RAL-318 289 chr2L 20550668 20550672 chr2L 20550726 20550752 4 71 0.5 2.5 1.5 1.6 84 chr2L 20550668 intergenic not near genes chr2L 20550710 intergenic not near genes chr2L 20550752 intergenic not near genes chr2L_4_20550001 chr2L_20550001 RAL-318 290 chr2L 20553187 20553219 chr2L 20553263 20553295 4 76 1.0 2.5 1.8 1.4 108 chr2L 20553187 intergenic not near genes chr2L 20553241 intergenic not near genes chr2L 20553295 intergenic not near genes chr2L_4_20550001 chr2L_20550001 RAL-318 291 chr2L 20568666 20568680 chr2L 20569056 20569070 X-element 5 390 4.0 2.0 3.0 1.2 404 chr2L 20568666 intron CR45347 + chr2L 20568868 intron CR45347 + chr2L 20569070 intron CR45347 + chr2L_5_20565001 chr2L_20565001 RAL-318 292 chr2L 20576234 20576252 chr2L 20583694 20583720 blood 6 7465 5.0 4.0 4.5 1.1 7486 chr2L 20576234 intergenic not near genes chr2L 20579977 intergenic not near genes chr2L 20583720 3` UTR CR44909 - chr2L_6_20575001 chr2L_20575001 RAL-318 293 chr2L 20601788 20601816 chr2L 20601866 20601894 7 77 2.5 3.5 3.0 1.8 106 chr2L 20601788 intron CR44909 - chr2L 20601841 intron CR44909 - chr2L 20601894 intron CR44909 - chr2L_7_20600001 chr2L_20600001 RAL-318 294 chr2L 20602716 20602749 chr2L 20602804 20602837 8 87 0.0 2.5 1.2 3.6 121 chr2L 20602716 intron CR44909 - chr2L 20602776 intron CR44909 - chr2L 20602837 intron CR44909 - chr2L_8_20600001 chr2L_20600001 RAL-318 295 chr2L 20668697 20668716 chr2L 20668773 20668792 4 76 1.0 2.5 1.8 1.4 95 chr2L 20668697 intron CG31678 - chr2L 20668744 intron CG31678 - chr2L 20668792 intron CG31678 - chr2L_4_20665001 chr2L_20665001 RAL-318 296 chr2L 20817835 20817871 chr2L 20817914 20817947 8 74 3.0 3.0 3.0 2.0 112 chr2L 20817835 exon CheB38a - chr2L 20817891 exon CheB38a - chr2L 20817947 exon CheB38a - chr2L_8_20815001 chr2L_20815001 RAL-318 297 chr2L 20840030 20840055 chr2L 20840240 20840267 11 209 1.5 2.5 2.0 3.7 237 chr2L 20840030 intergenic not near genes chr2L 20840148 intergenic not near genes chr2L 20840267 intergenic CG31676 + chr2L_11_20840001 chr2L_20840001 RAL-318 298 chr2L 20901473 20901489 chr2L 20902637 20902651 1360 7 1164 0.5 3.0 1.8 2.5 1178 chr2L 20901473 intron,intron CG43739 -,sky - chr2L 20902062 intron,intron CG43739 -,sky - chr2L 20902651 intron,intron CG43739 -,sky - chr2L_7_20900001 chr2L_20900001 RAL-318 299 chr2L 20967082 20967108 chr2L 20967168 20967194 9 85 2.5 1.5 2.0 3.0 112 chr2L 20967082 3` UTR CG42238 - chr2L 20967138 3` UTR CG42238 - chr2L 20967194 3` UTR CG42238 - chr2L_9_20965001 chr2L_20965001 RAL-318 300 chr2L 20968313 20968330 chr2L 20968475 20968492 7 162 3.0 2.0 2.5 2.0 179 chr2L 20968313 intron CG42238 - chr2L 20968402 intron CG42238 - chr2L 20968492 intron CG42238 - chr2L_7_20965001 chr2L_20965001 RAL-318 301 chr2L 20976640 20976668 chr2L 20981455 20981483 X-element 4 4814 3.0 1.5 2.2 1.2 4843 chr2L 20976640 intron CG42238 - chr2L 20979062 intron CG42238 - chr2L 20981483 intron CG42238 - chr2L_4_20975001 chr2L_20975001 RAL-318 302 chr2L 20991038 20991066 chr2L 20991116 20991144 9 77 3.0 4.5 3.8 1.9 106 chr2L 20991038 intron CG42238 - chr2L 20991091 intron CG42238 - chr2L 20991144 intron CG42238 - chr2L_9_20990001 chr2L_20990001 RAL-318 303 chr2L 21020281 21020309 chr2L 21023957 21023986 NOF 9 3676 2.0 4.0 3.0 2.2 3705 chr2L 21020281 intron CG42238 - chr2L 21022134 intron CG42238 - chr2L 21023986 intron CG42238 - chr2L_9_21020001 chr2L_21020001 RAL-318 304 chr2L 21077387 21077412 chr2L 21082731 21082757 9 5343 20.5 10.0 15.2 0.6 5370 chr2L 21077387 exon tadr + chr2L 21080072 exon tadr + chr2L 21082757 3` UTR CG33510 - chr2L_9_21080001 chr2L_21080001 RAL-318 305 chr2L 21106021 21106049 chr2L 21106104 21106133 6 84 2.0 1.5 1.8 2.1 112 chr2L 21106021 intron Nhe2 + chr2L 21106077 intron Nhe2 + chr2L 21106133 intron Nhe2 + chr2L_6_21105001 chr2L_21105001 RAL-318 306 chr2L 21286610 21286635 chr2L 21286687 21286713 6 78 1.5 3.5 2.5 1.7 103 chr2L 21286610 exon Mio - chr2L 21286662 intron Mio - chr2L 21286713 intron Mio - chr2L_6_21285001 chr2L_21285001 RAL-318 307 chr2L 21333133 21333164 chr2L 21333230 21333260 5 97 0.5 0.5 0.5 3.3 127 chr2L 21333133 intron dimm + chr2L 21333196 intron dimm + chr2L 21333260 intron dimm + chr2L_5_21330001 chr2L_21330001 RAL-318 308 chr2L 21597034 21597060 chr2L 21604777 21604799 roo 4 7742 1.5 3.5 2.5 1.1 7765 chr2L 21597034 intergenic not near genes chr2L 21600916 intergenic not near genes chr2L 21604799 intergenic not near genes chr2L_4_21600001 chr2L_21600001 RAL-318 309 chr2L 21684304 21684335 chr2L 21684567 21684598 5 263 0.5 0.5 0.5 3.3 294 chr2L 21684304 intron CG31619 + chr2L 21684451 intron CG31619 + chr2L 21684598 5` UTR CG31619 + chr2L_5_21680001 chr2L_21680001 RAL-318 310 chr2L 21685791 21685808 chr2L 21685867 21685884 5 76 5.0 1.0 3.0 1.2 93 chr2L 21685791 intron CG31619 + chr2L 21685838 intron CG31619 + chr2L 21685884 intron CG31619 + chr2L_5_21685001 chr2L_21685001 RAL-318 311 chr2L 21755500 21755524 chr2L 21755623 21755641 7 123 1.0 2.5 1.8 2.5 141 chr2L 21755500 intron step - chr2L 21755570 intron step - chr2L 21755641 intron step - chr2L_7_21755001 chr2L_21755001 RAL-318 312 chr2L 21771987 21771999 chr2L 21772066 21772073 4 78 1.5 1.0 1.2 1.8 86 chr2L 21771987 intron CG31612 - chr2L 21772030 intron CG31612 - chr2L 21772073 intron CG31612 - chr2L_4_21770001 chr2L_21770001 RAL-318 313 chr2L 21806227 21806261 chr2L 21806329 21806364 10 102 1.0 0.0 0.5 6.7 137 chr2L 21806227 intergenic not near genes chr2L 21806296 intergenic not near genes chr2L 21806364 intergenic not near genes chr2L_10_21805001 chr2L_21805001 RAL-318 314 chr2L 21809014 21809046 chr2L 21809220 21809252 7 203 3.0 3.5 3.2 1.7 238 chr2L 21809014 intergenic not near genes chr2L 21809133 intergenic not near genes chr2L 21809252 intergenic not near genes chr2L_7_21805001 chr2L_21805001 RAL-318 315 chr2L 21825156 21825179 chr2L 21825590 21825613 4 434 0.5 1.0 0.8 2.2 457 chr2L 21825156 intergenic not near genes chr2L 21825384 intergenic not near genes chr2L 21825613 intergenic not near genes chr2L_4_21825001 chr2L_21825001 RAL-318 316 chr2L 21855478 21855503 chr2L 21855564 21855588 4 86 3.5 1.5 2.5 1.1 110 chr2L 21855478 intron CR44917 + chr2L 21855533 intron CR44917 + chr2L 21855588 intron CR44917 + chr2L_4_21855001 chr2L_21855001 RAL-318 317 chr2L 21859317 21859351 chr2L 21859396 21859409 18 75 4.0 2.0 3.0 4.5 92 chr2L 21859317 intron CR44917 + chr2L 21859363 intron CR44917 + chr2L 21859409 intron CR44917 + chr2L_18_21855001 chr2L_21855001 RAL-318 318 chr2L 21981682 21981709 chr2L 21990847 21990869 roo 10 9164 1.5 3.0 2.2 3.1 9187 chr2L 21981682 exon CG2528 - chr2L 21986276 intron CG2528 - chr2L 21990869 exon CG2528 - chr2L_10_21985001 chr2L_21985001 RAL-318 319 chr2L 22011920 22011942 chr2L 22011997 22012023 6 80 4.5 3.5 4.0 1.2 103 chr2L 22011920 intergenic not near genes chr2L 22011972 intergenic not near genes chr2L 22012023 intergenic not near genes chr2L_6_22010001 chr2L_22010001 RAL-318 320 chr2L 22077295 22077319 chr2L 22077376 22077400 5 80 4.0 2.5 3.2 1.2 105 chr2L 22077295 intergenic not near genes chr2L 22077348 intergenic not near genes chr2L 22077400 intergenic not near genes chr2L_5_22075001 chr2L_22075001 RAL-318 321 chr2L 22199021 22199037 chr2L 22199111 22199127 5 89 2.0 2.5 2.2 1.6 106 chr2L 22199021 intron Ir40a - chr2L 22199074 intron Ir40a - chr2L 22199127 intron Ir40a - chr2L_5_22195001 chr2L_22195001 RAL-318 322 chr2L 22343187 22343214 chr2L 22343331 22343358 5 145 2.0 3.0 2.5 1.4 171 chr2L 22343187 intron CG17018 + chr2L 22343272 intron CG17018 + chr2L 22343358 intron CG17018 + chr2L_5_22340001 chr2L_22340001 RAL-318 323 chr2L 22350263 22350294 chr2L 22350365 22350396 10 101 3.0 3.0 3.0 2.5 133 chr2L 22350263 intron CG17018 + chr2L 22350330 intron CG17018 + chr2L 22350396 intron CG17018 + chr2L_10_22350001 chr2L_22350001 RAL-318 324 chr2L 22490517 22490521 chr2L 22497648 22497657 springer 4 7135 0.0 0.0 0.0 4.0 7140 chr2L 22490517 intergenic not near genes chr2L 22494087 intergenic not near genes chr2L 22497657 intergenic not near genes chr2L_4_22490001 chr2L_22490001 RAL-318 325 chr2L 22510410 22510437 chr2L 22510619 22510646 5 209 4.0 3.5 3.8 1.0 236 chr2L 22510410 intergenic not near genes chr2L 22510528 intergenic not near genes chr2L 22510646 intergenic not near genes chr2L_5_22510001 chr2L_22510001 RAL-318 326 chr2L 22642663 22642684 chr2L 22642739 22642759 8 75 1.0 3.5 2.2 2.5 96 chr2L 22642663 intron CG40006 - chr2L 22642711 intron CG40006 - chr2L 22642759 intron CG40006 - chr2L_8_22640001 chr2L_22640001 RAL-318 327 chr2L 22679816 22679828 chr2L 22684588 22684600 F-element 5 4772 1.5 4.5 3.0 1.2 4784 chr2L 22679816 intron CG40006 - chr2L 22682208 intron CG40006 - chr2L 22684600 intron CG40006 - chr2L_5_22680001 chr2L_22680001 RAL-318 328 chr2L 22983941 22983972 chr2L 22984017 22984048 4 74 3.0 0.5 1.8 1.4 107 chr2L 22983941 intron cta + chr2L 22983994 intron cta + chr2L 22984048 intron cta + chr2L_4_22980001 chr2L_22980001 RAL-318 329 chr2L 23168856 23168877 chr2L 23168931 23168937 4 71 9.0 5.0 7.0 0.5 81 chr2L 23168856 intron,5` UTR CG12567 -,mir-2490 + chr2L 23168896 intron,5` UTR CG12567 -,mir-2490 + chr2L 23168937 intron CG12567 - chr2L_4_23165001 chr2L_23165001 RAL-318 330 chr2R 508808 508829 chr2R 508918 508940 5 112 13.5 12.0 12.8 0.4 132 chr2R 508808 intron CG40378 + chr2R 508874 intron CG40378 + chr2R 508940 intron CG40378 + chr2R_5_505001 chr2R_505001 RAL-318 331 chr2R 529322 529354 chr2R 537947 537978 Max-element 9 8622 2.0 3.0 2.5 2.6 8656 chr2R 529322 intron CG40378 + chr2R 533650 intron CG40378 + chr2R 537978 intron CG40378 + chr2R_9_530001 chr2R_530001 RAL-318 332 chr2R 1370163 1370182 chr2R 1370252 1370252 4 84 2.5 2.0 2.2 1.2 89 chr2R 1370163 intron,3` UTR l(2)41Ab +,CR44043 - chr2R 1370208 intron,3` UTR l(2)41Ab +,CR44043 - chr2R 1370252 intron,3` UTR l(2)41Ab +,CR44043 - chr2R_4_1370001 chr2R_1370001 RAL-318 333 chr2R 1732852 1732886 chr2R 1732999 1733032 5 147 0.5 1.5 1.0 2.5 180 chr2R 1732852 intron CG41520 + chr2R 1732942 intron CG41520 + chr2R 1733032 intron CG41520 + chr2R_5_1730001 chr2R_1730001 RAL-318 334 chr2R 2498987 2499018 chr2R 2508134 2508151 roo 5 9144 1.5 5.5 3.5 1.1 9164 chr2R 2498987 intron MFS17 - chr2R 2503569 intron MFS17 - chr2R 2508151 intron MFS17 - chr2R_5_2500001 chr2R_2500001 RAL-318 335 chr2R 3144092 3144103 chr2R 3393370 3393381 Doc 5 249278 7.0 5.0 6.0 0.7 249289 chr2R 3144092 intron CG42596 + chr2R 3268736 intergenic not near genes chr2R 3393381 intergenic not near genes chr2R_5_3265001 chr2R_3265001 RAL-318 336 chr2R 3291934 3292101 chr2R 3915103 3915262 7 623165 6.5 23.0 14.8 0.4 623328 chr2R 3291934 intergenic not near genes chr2R 3603598 intergenic not near genes chr2R 3915262 intron uex - chr2R_7_3600001 chr2R_3600001 RAL-318 337 chr2R 3293744 3293754 chr2R 3293822 3293832 4 78 2.5 1.5 2.0 1.3 88 chr2R 3293744 intergenic not near genes chr2R 3293788 intergenic not near genes chr2R 3293832 intergenic not near genes chr2R_4_3290001 chr2R_3290001 RAL-318 338 chr2R 3927686 3927718 chr2R 3927783 3927815 4 95 1.5 2.0 1.8 1.4 129 chr2R 3927686 intron uex - chr2R 3927750 intron uex - chr2R 3927815 intron uex - chr2R_4_3925001 chr2R_3925001 RAL-318 339 chr2R 4312953 4312984 chr2R 4313036 4313067 5 83 1.5 2.5 2.0 1.7 114 chr2R 4312953 intergenic not near genes chr2R 4313010 intergenic not near genes chr2R 4313067 intergenic not near genes chr2R_5_4310001 chr2R_4310001 RAL-318 340 chr2R 4508163 4508193 chr2R 4508244 4508274 17 80 1.0 5.0 3.0 4.2 111 chr2R 4508163 intron CR44100 + chr2R 4508218 5` UTR CR44100 + chr2R 4508274 5` UTR CR44100 + chr2R_17_4505001 chr2R_4505001 RAL-318 341 chr2R 4783423 4783453 chr2R 4783501 4783516 10 72 3.5 4.0 3.8 2.1 93 chr2R 4783423 intergenic not near genes chr2R 4783470 intergenic not near genes chr2R 4783516 intergenic not near genes chr2R_10_4780001 chr2R_4780001 RAL-318 342 chr2R 4838871 4838875 chr2R 4840394 4840398 transib2 4 1523 7.0 4.0 5.5 0.6 1527 chr2R 4838871 intergenic not near genes chr2R 4839634 intergenic not near genes chr2R 4840398 intergenic not near genes chr2R_4_4835001 chr2R_4835001 RAL-318 343 chr2R 4838879 4838886 chr2R 4840393 4840409 transib2 6 1519 6.0 4.0 5.0 1.0 1530 chr2R 4838879 intergenic not near genes chr2R 4839644 intergenic not near genes chr2R 4840409 intergenic not near genes chr2R_6_4835001 chr2R_4835001 RAL-318 344 chr2R 4942075 4942085 chr2R 4942178 4942210 5 120 0.5 0.0 0.2 4.2 135 chr2R 4942075 intron Ir41a + chr2R 4942142 intron Ir41a + chr2R 4942210 intron Ir41a + chr2R_5_4940001 chr2R_4940001 RAL-318 345 chr2R 4957016 4957045 chr2R 4957119 4957119 8 99 1.5 2.0 1.8 2.9 103 chr2R 4957016 intron Ir41a + chr2R 4957068 intron Ir41a + chr2R 4957119 intron Ir41a + chr2R_8_4955001 chr2R_4955001 RAL-318 346 chr2R 5022753 5022758 chr2R 5031563 5031568 1360 4 8810 18.0 22.5 20.2 0.2 8815 chr2R 5022753 intergenic not near genes chr2R 5027160 intergenic not near genes chr2R 5031568 intergenic CR44105 - chr2R_4_5025001 chr2R_5025001 RAL-318 347 chr2R 5534882 5534884 chr2R 5534962 5534964 4 82 8.5 4.5 6.5 0.5 82 chr2R 5534882 intron CG30438 + chr2R 5534923 intron CG30438 + chr2R 5534964 intron CG30438 + chr2R_4_5530001 chr2R_5530001 RAL-318 348 chr2R 5543203 5543219 chr2R 5547287 5547301 invader1 5 4084 1.0 3.0 2.0 1.7 4098 chr2R 5543203 intron CG30438 + chr2R 5545252 intron CG30438 + chr2R 5547301 intron CG30438 + chr2R_5_5545001 chr2R_5545001 RAL-318 349 chr2R 5581398 5581411 chr2R 5627602 5627620 6 46208 2.0 5.0 3.5 1.3 46222 chr2R 5581398 intergenic not near genes chr2R 5604509 exon Fis1 - chr2R 5627620 intergenic not near genes chr2R_6_5600001 chr2R_5600001 RAL-318 350 chr2R 5760514 5760530 chr2R 5760617 5760629 6 102 1.5 2.5 2.0 2.0 115 chr2R 5760514 intergenic CG7791 -,Gp210 + chr2R 5760572 intergenic CG7791 -,Gp210 + chr2R 5760629 intergenic CG7791 -,Gp210 + chr2R_6_5760001 chr2R_5760001 RAL-318 351 chr2R 5814040 5814072 chr2R 5814115 5814149 8 74 6.0 3.0 4.5 1.5 109 chr2R 5814040 intron dpr12 + chr2R 5814094 intron dpr12 + chr2R 5814149 intron dpr12 + chr2R_8_5810001 chr2R_5810001 RAL-318 352 chr2R 5938510 5938528 chr2R 5938689 5938704 4 178 3.0 2.0 2.5 1.1 194 chr2R 5938510 intron CR44126 + chr2R 5938607 intron CR44126 + chr2R 5938704 5` UTR CR44126 + chr2R_4_5935001 chr2R_5935001 RAL-318 353 chr2R 6037460 6037478 chr2R 6037545 6037563 6 85 1.0 1.5 1.2 2.7 103 chr2R 6037460 intron CG14591 - chr2R 6037512 intron CG14591 - chr2R 6037563 intron CG14591 - chr2R_6_6035001 chr2R_6035001 RAL-318 354 chr2R 6096727 6096752 chr2R 6101909 6101949 BS 12 5190 2.5 1.0 1.8 4.3 5222 chr2R 6096727 intron EcR - chr2R 6099338 intron EcR - chr2R 6101949 intron EcR - chr2R_12_6095001 chr2R_6095001 RAL-318 355 chr2R 6168198 6168213 chr2R 6168277 6168295 6 82 2.0 2.5 2.2 1.9 97 chr2R 6168198 intron EcR - chr2R 6168246 intron EcR - chr2R 6168295 intron EcR - chr2R_6_6165001 chr2R_6165001 RAL-318 356 chr2R 6178686 6178711 chr2R 6178771 6178779 6 84 3.5 4.5 4.0 1.2 93 chr2R 6178686 intergenic not near genes chr2R 6178732 intergenic not near genes chr2R 6178779 intergenic not near genes chr2R_6_6175001 chr2R_6175001 RAL-318 357 chr2R 6194687 6194702 chr2R 6194770 6194785 4 82 7.0 5.5 6.2 0.6 98 chr2R 6194687 intron Ptr - chr2R 6194736 intron Ptr - chr2R 6194785 intron Ptr - chr2R_4_6190001 chr2R_6190001 RAL-318 358 chr2R 6494525 6494552 chr2R 6499287 6499314 F-element 8 4762 5.5 0.0 2.8 2.1 4789 chr2R 6494525 intergenic not near genes chr2R 6496920 intergenic not near genes chr2R 6499314 intergenic not near genes chr2R_8_6495001 chr2R_6495001 RAL-318 359 chr2R 6579787 6579805 chr2R 6584872 6584891 flea 4 5085 0.0 1.0 0.5 2.7 5104 chr2R 6579787 intron jing + chr2R 6582339 intron jing + chr2R 6584891 intron jing + chr2R_4_6580001 chr2R_6580001 RAL-318 360 chr2R 6597872 6597900 chr2R 6597960 6597987 13 88 2.5 2.5 2.5 3.7 115 chr2R 6597872 intron jing + chr2R 6597930 intron jing + chr2R 6597987 intron jing + chr2R_13_6595001 chr2R_6595001 RAL-318 361 chr2R 6794221 6794226 chr2R 6794496 6794501 4 276 1.0 2.5 1.8 1.4 280 chr2R 6794221 intron Epac - chr2R 6794361 intron Epac - chr2R 6794501 intron Epac - chr2R_4_6790001 chr2R_6790001 RAL-318 362 chr2R 6797084 6797106 chr2R 6797177 6797190 5 86 4.5 5.0 4.8 0.9 106 chr2R 6797084 5` UTR Epac - chr2R 6797137 5` UTR Epac - chr2R 6797190 5` UTR Epac - chr2R_5_6795001 chr2R_6795001 RAL-318 363 chr2R 6822404 6822433 chr2R 6822481 6822510 7 77 3.5 6.5 5.0 1.2 106 chr2R 6822404 3` UTR CR44442 - chr2R 6822457 3` UTR CR44442 - chr2R 6822510 3` UTR CR44442 - chr2R_7_6820001 chr2R_6820001 RAL-318 364 chr2R 6831414 6831431 chr2R 6831782 6831799 11 367 1.5 4.0 2.8 2.9 385 chr2R 6831414 intron,exon CG15236 +,CG34215 - chr2R 6831606 intron,exon CG15236 +,CG34215 - chr2R 6831799 intron CG15236 + chr2R_11_6830001 chr2R_6830001 RAL-318 365 chr2R 6978656 6978671 chr2R 6978839 6978854 11 182 3.5 5.5 4.5 2.0 198 chr2R 6978656 intron vimar - chr2R 6978755 intron vimar - chr2R 6978854 intron vimar - chr2R_11_6975001 chr2R_6975001 RAL-318 366 chr2R 7139952 7139956 chr2R 7141413 7141448 hopper2 4 1484 1.0 5.0 3.0 1.0 1496 chr2R 7139952 intergenic not near genes chr2R 7140700 intergenic not near genes chr2R 7141448 intergenic not near genes chr2R_4_7140001 chr2R_7140001 RAL-318 367 chr2R 7153165 7153188 chr2R 7153250 7153274 12 84 4.5 2.0 3.2 2.9 109 chr2R 7153165 intron,intron pk +,Spn43Ab - chr2R 7153220 intron,intron pk +,Spn43Ab - chr2R 7153274 intron,intron pk +,Spn43Ab - chr2R_12_7150001 chr2R_7150001 RAL-318 368 chr2R 7209846 7209872 chr2R 7217594 7217620 roo 7 7747 1.5 3.5 2.5 2.0 7774 chr2R 7209846 intron pk + chr2R 7213733 intron pk + chr2R 7217620 intron pk + chr2R_7_7210001 chr2R_7210001 RAL-318 369 chr2R 7235817 7235852 chr2R 7240909 7240944 jockey 8 5092 3.0 3.5 3.2 1.9 5127 chr2R 7235817 intergenic not near genes chr2R 7238380 intergenic not near genes chr2R 7240944 intergenic not near genes chr2R_8_7235001 chr2R_7235001 RAL-318 370 chr2R 7254807 7254840 chr2R 7254922 7254932 9 106 2.5 3.5 3.0 2.2 125 chr2R 7254807 5` UTR CR45280 + chr2R 7254870 5` UTR CR45280 + chr2R 7254932 5` UTR CR45280 + chr2R_9_7250001 chr2R_7250001 RAL-318 371 chr2R 7272282 7272288 chr2R 7272340 7272372 4 76 0.0 2.0 1.0 2.0 90 chr2R 7272282 3` UTR Br140 - chr2R 7272327 3` UTR Br140 - chr2R 7272372 3` UTR Br140 - chr2R_4_7270001 chr2R_7270001 RAL-318 372 chr2R 7290188 7290224 chr2R 7290290 7290307 5 98 0.5 1.5 1.0 2.5 119 chr2R 7290188 intron pwn + chr2R 7290248 intron pwn + chr2R 7290307 intron pwn + chr2R_5_7290001 chr2R_7290001 RAL-318 373 chr2R 7310768 7310795 chr2R 7310850 7310875 7 79 2.5 3.0 2.8 1.8 107 chr2R 7310768 intergenic not near genes chr2R 7310822 intergenic not near genes chr2R 7310875 intergenic not near genes chr2R_7_7310001 chr2R_7310001 RAL-318 374 chr2R 7393385 7393398 chr2R 7393461 7393485 4 85 3.0 3.5 3.2 1.0 100 chr2R 7393385 intergenic CG1707 -,Gr43a - chr2R 7393435 intergenic CG1707 -,Gr43a - chr2R 7393485 intergenic CG1707 -,Gr43a - chr2R_4_7390001 chr2R_7390001 RAL-318 375 chr2R 7434892 7434909 chr2R 7439193 7439210 Juan 6 4301 1.5 1.0 1.2 2.7 4318 chr2R 7434892 intergenic so + chr2R 7437051 intergenic not near genes chr2R 7439210 intergenic not near genes chr2R_6_7435001 chr2R_7435001 RAL-318 376 chr2R 7608415 7608439 chr2R 7613616 7613627 I-element 9 5200 2.5 4.5 3.5 2.0 5212 chr2R 7608415 intron CG1358 - chr2R 7611021 intron CG1358 - chr2R 7613627 intron CG1358 - chr2R_9_7610001 chr2R_7610001 RAL-318 377 chr2R 7614750 7614766 chr2R 7614837 7614853 5 87 2.0 0.0 1.0 2.5 103 chr2R 7614750 intron CG1358 - chr2R 7614802 intron CG1358 - chr2R 7614853 intron CG1358 - chr2R_5_7610001 chr2R_7610001 RAL-318 378 chr2R 7742624 7742650 chr2R 7742877 7742897 8 252 3.0 3.5 3.2 1.9 273 chr2R 7742624 intron,intron CG30497 -,CG45093 - chr2R 7742760 intron,intron CG30497 -,CG45093 - chr2R 7742897 intron,intron CG30497 -,CG45093 - chr2R_8_7740001 chr2R_7740001 RAL-318 379 chr2R 7815682 7815689 chr2R 7822150 7822157 Burdock 4 6468 2.0 5.0 3.5 0.9 6475 chr2R 7815682 intergenic CG1882 + chr2R 7818920 intergenic not near genes chr2R 7822157 3` UTR cathD - chr2R_4_7815001 chr2R_7815001 RAL-318 380 chr2R 7910160 7910177 chr2R 7910245 7910262 5 85 3.5 6.0 4.8 0.9 102 chr2R 7910160 intron CG30377 + chr2R 7910211 intron CG30377 + chr2R 7910262 intron CG30377 + chr2R_5_7910001 chr2R_7910001 RAL-318 381 chr2R 8015672 8015682 chr2R 8017674 8017705 4 2017 1.5 4.0 2.8 1.1 2033 chr2R 8015672 intergenic mir-4981 + chr2R 8016688 intergenic not near genes chr2R 8017705 intergenic not near genes chr2R_4_8015001 chr2R_8015001 RAL-318 382 chr2R 8036260 8036267 chr2R 8036341 8036349 4 82 6.5 5.0 5.8 0.6 89 chr2R 8036260 intron Optix + chr2R 8036304 intron Optix + chr2R 8036349 intron Optix + chr2R_4_8035001 chr2R_8035001 RAL-318 383 chr2R 8067075 8067098 chr2R 8067159 8067180 6 83 0.5 6.0 3.2 1.4 105 chr2R 8067075 intron CG17977 - chr2R 8067128 exon CG17977 - chr2R 8067180 exon CG17977 - chr2R_6_8065001 chr2R_8065001 RAL-318 384 chr2R 8089256 8089288 chr2R 8089342 8089373 5 86 2.0 2.5 2.2 1.6 117 chr2R 8089256 3` UTR sut2 + chr2R 8089314 intergenic sut2 +,sut3 + chr2R 8089373 intergenic sut2 +,sut3 + chr2R_5_8085001 chr2R_8085001 RAL-318 385 chr2R 8105933 8105957 chr2R 8106024 8106048 10 91 4.5 6.0 5.2 1.6 115 chr2R 8105933 5` UTR Cul4 - chr2R 8105990 intron Cul4 - chr2R 8106048 5` UTR Cul4 - chr2R_10_8105001 chr2R_8105001 RAL-318 386 chr2R 8152698 8152718 chr2R 8152783 8152803 5 85 1.0 3.0 2.0 1.7 105 chr2R 8152698 intron,intron Lpin -,kermit - chr2R 8152750 intron,intron Lpin -,kermit - chr2R 8152803 intron,intron Lpin -,kermit - chr2R_5_8150001 chr2R_8150001 RAL-318 387 chr2R 8153652 8153684 chr2R 8154138 8154169 13 483 1.5 2.0 1.8 4.6 517 chr2R 8153652 intron,intron Lpin -,kermit - chr2R 8153910 intron,intron Lpin -,kermit - chr2R 8154169 intron,intron Lpin -,kermit - chr2R_13_8150001 chr2R_8150001 RAL-318 388 chr2R 8155579 8155613 chr2R 8155667 8155701 13 88 2.5 1.5 2.0 4.3 122 chr2R 8155579 intron,intron Lpin -,kermit - chr2R 8155640 intron,intron Lpin -,kermit - chr2R 8155701 intron,intron Lpin -,kermit - chr2R_13_8155001 chr2R_8155001 RAL-318 389 chr2R 8160934 8160953 chr2R 8161024 8161043 1360 5 89 5.5 4.0 4.8 0.9 109 chr2R 8160934 intron CG8708 - chr2R 8160988 intron CG8708 - chr2R 8161043 intron CG8708 - chr2R_5_8160001 chr2R_8160001 RAL-318 390 chr2R 8166537 8166555 chr2R 8168729 8168749 4 2192 35.5 22.0 28.8 0.1 2212 chr2R 8166537 exon Rs1 + chr2R 8167643 exon Rs1 + chr2R 8168749 exon Gasz + chr2R_4_8165001 chr2R_8165001 RAL-318 391 chr2R 8242008 8242037 chr2R 8242091 8242126 10 86 1.0 2.0 1.5 4.0 118 chr2R 8242008 3` UTR CR44276 - chr2R 8242067 intergenic CR44276 -,CR44445 - chr2R 8242126 intergenic CR44276 -,CR44445 - chr2R_10_8240001 chr2R_8240001 RAL-318 392 chr2R 8277640 8277661 chr2R 8277729 8277755 9 91 5.0 0.5 2.8 2.4 115 chr2R 8277640 5` UTR CR44280 + chr2R 8277698 5` UTR CR44280 + chr2R 8277755 5` UTR CR44280 + chr2R_9_8275001 chr2R_8275001 RAL-318 393 chr2R 8330864 8330887 chr2R 8331350 8331373 roo 10 484 2.0 1.0 1.5 4.0 509 chr2R 8330864 intron pdm3 + chr2R 8331118 intron pdm3 + chr2R 8331373 intron pdm3 + chr2R_10_8330001 chr2R_8330001 RAL-318 394 chr2R 8398227 8398240 chr2R 8403005 8403014 Doc 5 4778 4.0 6.0 5.0 0.8 4787 chr2R 8398227 intron CG2121 - chr2R 8400620 intron CG2121 - chr2R 8403014 intron CG2121 - chr2R_5_8400001 chr2R_8400001 RAL-318 395 chr2R 8478220 8478253 chr2R 8478311 8478341 6 86 5.0 3.0 4.0 1.2 121 chr2R 8478220 intron mtt - chr2R 8478280 intron mtt - chr2R 8478341 intron mtt - chr2R_6_8475001 chr2R_8475001 RAL-318 396 chr2R 8722762 8722794 chr2R 8723003 8723034 pogo 9 237 1.0 4.0 2.5 2.6 272 chr2R 8722762 intron CG14767 - chr2R 8722898 intron CG14767 - chr2R 8723034 intron CG14767 - chr2R_9_8720001 chr2R_8720001 RAL-318 397 chr2R 8759760 8759791 chr2R 8759839 8759869 9 78 1.5 3.0 2.2 2.8 109 chr2R 8759760 intergenic CG8740 + chr2R 8759814 intergenic CG8740 + chr2R 8759869 intergenic CG8740 + chr2R_9_8755001 chr2R_8755001 RAL-318 398 chr2R 8801321 8801353 chr2R 8801410 8801443 4 90 1.5 1.0 1.2 1.8 122 chr2R 8801321 intron sns + chr2R 8801382 intron sns + chr2R 8801443 intron sns + chr2R_4_8800001 chr2R_8800001 RAL-318 399 chr2R 8827758 8827791 chr2R 8827834 8827867 4 76 3.5 1.5 2.5 1.1 109 chr2R 8827758 intron sns + chr2R 8827812 intron sns + chr2R 8827867 intron sns + chr2R_4_8825001 chr2R_8825001 RAL-318 400 chr2R 8852762 8852789 chr2R 8852843 8852869 8 80 1.0 8.0 4.5 1.5 107 chr2R 8852762 3` UTR sns + chr2R 8852816 3` UTR sns + chr2R 8852869 3` UTR sns + chr2R_8_8850001 chr2R_8850001 RAL-318 401 chr2R 9151307 9151333 chr2R 9157777 9157802 Burdock 6 6470 2.5 1.0 1.8 2.1 6495 chr2R 9151307 3` UTR CG30345 + chr2R 9154554 intergenic not near genes chr2R 9157802 intergenic CG8008 - chr2R_6_9150001 chr2R_9150001 RAL-318 402 chr2R 9212704 9212710 chr2R 9213184 9213196 roo 5 483 0.5 4.0 2.2 1.6 492 chr2R 9212704 intergenic CR45309 + chr2R 9212950 intergenic CR45309 + chr2R 9213196 5` UTR CR45309 + chr2R_5_9210001 chr2R_9210001 RAL-318 403 chr2R 9212718 9212725 chr2R 9213177 9213187 roo 4 464 0.5 3.5 2.0 1.3 469 chr2R 9212718 intergenic CR45309 + chr2R 9212952 intergenic CR45309 + chr2R 9213187 5` UTR CR45309 + chr2R_4_9210001 chr2R_9210001 RAL-318 404 chr2R 9460098 9460127 chr2R 9460200 9460229 10 101 1.0 3.0 2.0 3.3 131 chr2R 9460098 intron Camta + chr2R 9460164 intron Camta + chr2R 9460229 intron Camta + chr2R_10_9460001 chr2R_9460001 RAL-318 405 chr2R 9469739 9469760 chr2R 9469820 9469843 6 80 2.5 1.5 2.0 2.0 104 chr2R 9469739 intron Camta + chr2R 9469791 intron Camta + chr2R 9469843 intron Camta + chr2R_6_9465001 chr2R_9465001 RAL-318 406 chr2R 9500451 9500478 chr2R 9500527 9500554 7 74 3.5 2.0 2.8 1.8 103 chr2R 9500451 intron Wnt2 + chr2R 9500502 intron Wnt2 + chr2R 9500554 intron Wnt2 + chr2R_7_9500001 chr2R_9500001 RAL-318 407 chr2R 9510668 9510693 chr2R 9510784 9510809 6 116 0.0 2.5 1.2 2.7 141 chr2R 9510668 intron brp + chr2R 9510738 intron brp + chr2R 9510809 intron brp + chr2R_6_9510001 chr2R_9510001 RAL-318 408 chr2R 9542221 9542240 chr2R 9542413 9542432 7 192 1.5 0.5 1.0 3.5 211 chr2R 9542221 3` UTR CG1888 - chr2R 9542326 3` UTR CG1888 - chr2R 9542432 3` UTR CG1888 - chr2R_7_9540001 chr2R_9540001 RAL-318 409 chr2R 9561825 9561843 chr2R 9561913 9561931 5 88 1.0 1.0 1.0 2.5 106 chr2R 9561825 3` UTR,intron CR45281 -,CG1809 + chr2R 9561878 3` UTR,intron CR45281 -,CG1809 + chr2R 9561931 3` UTR,intron CR45281 -,CG1809 + chr2R_5_9560001 chr2R_9560001 RAL-318 410 chr2R 9784132 9784141 chr2R 9784223 9784232 4 90 2.0 4.0 3.0 1.0 100 chr2R 9784132 intron CG1688 - chr2R 9784182 intron CG1688 - chr2R 9784232 intron CG1688 - chr2R_4_9780001 chr2R_9780001 RAL-318 411 chr2R 9817435 9817451 chr2R 9817513 9817528 5 78 4.0 3.0 3.5 1.1 93 chr2R 9817435 intron,exon CG1648 -,lectin-46Ca + chr2R 9817482 intron,intron CG1648 -,lectin-46Ca + chr2R 9817528 intron,intron CG1648 -,lectin-46Ca + chr2R_5_9815001 chr2R_9815001 RAL-318 412 chr2R 9869672 9869702 chr2R 9869783 9869797 4 107 1.5 2.0 1.8 1.4 125 chr2R 9869672 intron cbx - chr2R 9869734 intron cbx - chr2R 9869797 intron cbx - chr2R_4_9865001 chr2R_9865001 RAL-318 413 chr2R 9945434 9945474 chr2R 9945630 9945670 BS 12 192 4.5 1.5 3.0 3.0 236 chr2R 9945434 intron Mef2 - chr2R 9945552 intron Mef2 - chr2R 9945670 intron Mef2 - chr2R_12_9945001 chr2R_9945001 RAL-318 414 chr2R 10005859 10005882 chr2R 10007012 10007047 1360 8 1156 5.0 4.5 4.8 1.4 1188 chr2R 10005859 intron Pka-R2 - chr2R 10006453 intron Pka-R2 - chr2R 10007047 intron Pka-R2 - chr2R_8_10005001 chr2R_10005001 RAL-318 415 chr2R 10010454 10010479 chr2R 10010569 10010579 4 110 3.0 3.5 3.2 1.0 125 chr2R 10010454 intron Pka-R2 - chr2R 10010516 intron Pka-R2 - chr2R 10010579 intron Pka-R2 - chr2R_4_10010001 chr2R_10010001 RAL-318 416 chr2R 10132206 10132219 chr2R 10132271 10132298 7 77 2.5 5.0 3.8 1.5 92 chr2R 10132206 intron gem + chr2R 10132252 intron gem + chr2R 10132298 intron gem + chr2R_7_10130001 chr2R_10130001 RAL-318 417 chr2R 10147649 10147673 chr2R 10147730 10147756 6 83 3.0 2.0 2.5 1.7 107 chr2R 10147649 exon KCNQ - chr2R 10147702 intron KCNQ - chr2R 10147756 intron KCNQ - chr2R_6_10145001 chr2R_10145001 RAL-318 418 chr2R 10176885 10176909 chr2R 10186052 10186076 roo 8 9167 2.0 1.0 1.5 3.2 9191 chr2R 10176885 intron KCNQ - chr2R 10181480 intron KCNQ - chr2R 10186076 intron KCNQ - chr2R_8_10180001 chr2R_10180001 RAL-318 419 chr2R 10269566 10269595 chr2R 10269660 10269689 9 94 1.5 2.0 1.8 3.2 123 chr2R 10269566 intron CAP + chr2R 10269628 intron CAP + chr2R 10269689 intron CAP + chr2R_9_10265001 chr2R_10265001 RAL-318 420 chr2R 10300651 10300665 chr2R 10300742 10300761 6 95 1.0 0.5 0.8 3.3 110 chr2R 10300651 intron CAP + chr2R 10300706 intron CAP + chr2R 10300761 intron CAP + chr2R_6_10300001 chr2R_10300001 RAL-318 421 chr2R 10303528 10303562 chr2R 10303628 10303655 8 99 1.0 2.0 1.5 3.2 127 chr2R 10303528 intron CAP + chr2R 10303592 intron CAP + chr2R 10303655 intron CAP + chr2R_8_10300001 chr2R_10300001 RAL-318 422 chr2R 10352675 10352705 chr2R 10352752 10352782 7 77 1.0 1.0 1.0 3.5 107 chr2R 10352675 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352728 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352782 intron,exon,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R_7_10350001 chr2R_10350001 RAL-318 423 chr2R 10556370 10556380 chr2R 10556439 10556462 6 79 0.0 5.0 2.5 1.7 92 chr2R 10556370 intergenic not near genes chr2R 10556416 intergenic not near genes chr2R 10556462 intergenic not near genes chr2R_6_10555001 chr2R_10555001 RAL-318 424 chr2R 10582126 10582144 chr2R 10582221 10582239 8 95 1.0 0.0 0.5 5.3 113 chr2R 10582126 intron psq + chr2R 10582182 intron psq + chr2R 10582239 intron psq + chr2R_8_10580001 chr2R_10580001 RAL-318 425 chr2R 10585573 10585591 chr2R 10594156 10594173 Tirant 9 8582 2.0 2.5 2.2 2.8 8600 chr2R 10585573 intron psq + chr2R 10589873 intron psq + chr2R 10594173 intron psq + chr2R_9_10585001 chr2R_10585001 RAL-318 426 chr2R 10644060 10644086 chr2R 10644136 10644164 7 77 1.0 1.0 1.0 3.5 104 chr2R 10644060 intron Git - chr2R 10644112 intron Git - chr2R 10644164 intron Git - chr2R_7_10640001 chr2R_10640001 RAL-318 427 chr2R 10761556 10761578 chr2R 10761710 10761728 10 153 7.5 1.0 4.2 1.9 172 chr2R 10761556 intron,5` UTR CG33144 -,CR43605 + chr2R 10761642 intron,5` UTR CG33144 -,CR43605 + chr2R 10761728 intron CG33144 - chr2R_10_10760001 chr2R_10760001 RAL-318 428 chr2R 10781397 10781422 chr2R 10781757 10781782 13 359 2.5 1.5 2.0 4.3 385 chr2R 10781397 intron CG33144 - chr2R 10781590 intron CG33144 - chr2R 10781782 intron CG33144 - chr2R_13_10780001 chr2R_10780001 RAL-318 429 chr2R 10790140 10790175 chr2R 10790228 10790263 11 86 2.5 4.5 3.5 2.4 123 chr2R 10790140 intron CG33144 - chr2R 10790202 intron CG33144 - chr2R 10790263 intron CG33144 - chr2R_11_10790001 chr2R_10790001 RAL-318 430 chr2R 11009814 11009848 chr2R 11018988 11019006 roo 9 9169 3.0 6.0 4.5 1.6 9192 chr2R 11009814 intron luna - chr2R 11014410 intron luna - chr2R 11019006 intron luna - chr2R_9_11010001 chr2R_11010001 RAL-318 431 chr2R 11019877 11019906 chr2R 11024943 11024972 jockey 5 5065 5.0 1.0 3.0 1.2 5095 chr2R 11019877 intron luna - chr2R 11022424 intron luna - chr2R 11024972 intron luna - chr2R_5_11020001 chr2R_11020001 RAL-318 432 chr2R 11179271 11179289 chr2R 11179357 11179375 6 86 1.0 6.0 3.5 1.3 104 chr2R 11179271 intron shn + chr2R 11179323 intron shn + chr2R 11179375 intron shn + chr2R_6_11175001 chr2R_11175001 RAL-318 433 chr2R 11404788 11404810 chr2R 11404874 11404896 4 86 1.0 2.5 1.8 1.4 108 chr2R 11404788 intergenic not near genes chr2R 11404842 intergenic not near genes chr2R 11404896 intergenic not near genes chr2R_4_11400001 chr2R_11400001 RAL-318 434 chr2R 11472658 11472679 chr2R 11473844 11473876 pogo 6 1194 0.5 2.5 1.5 2.4 1218 chr2R 11472658 intergenic not near genes chr2R 11473267 intergenic not near genes chr2R 11473876 intergenic not near genes chr2R_6_11470001 chr2R_11470001 RAL-318 435 chr2R 11540476 11540500 chr2R 11540589 11540612 9 112 2.5 6.5 4.5 1.6 136 chr2R 11540476 intergenic not near genes chr2R 11540544 intergenic not near genes chr2R 11540612 intergenic not near genes chr2R_9_11540001 chr2R_11540001 RAL-318 436 chr2R 11614626 11614792 chr2R 11614710 11614879 9 86 2.0 2.0 2.0 3.0 253 chr2R 11614626 intron tou - chr2R 11614752 intron tou - chr2R 11614879 intron tou - chr2R_9_11610001 chr2R_11610001 RAL-318 437 chr2R 11674997 11675025 chr2R 11675077 11675103 12 80 0.0 1.0 0.5 8.0 106 chr2R 11674997 intron Roc2 - chr2R 11675050 intron Roc2 - chr2R 11675103 intron Roc2 - chr2R_12_11675001 chr2R_11675001 RAL-318 438 chr2R 11724175 11724188 chr2R 11724258 11724271 4 83 0.0 3.0 1.5 1.6 96 chr2R 11724175 intron pyr + chr2R 11724223 intron pyr + chr2R 11724271 intron pyr + chr2R_4_11720001 chr2R_11720001 RAL-318 439 chr2R 12103261 12103293 chr2R 12103528 12103555 9 264 1.5 2.0 1.8 3.2 294 chr2R 12103261 intron jeb - chr2R 12103408 intron jeb - chr2R 12103555 intron jeb - chr2R_9_12100001 chr2R_12100001 RAL-318 440 chr2R 12124828 12124858 chr2R 12124912 12124942 9 82 3.5 2.5 3.0 2.2 114 chr2R 12124828 intergenic not near genes chr2R 12124885 intergenic not near genes chr2R 12124942 intergenic not near genes chr2R_9_12120001 chr2R_12120001 RAL-318 441 chr2R 12146485 12146502 chr2R 12147599 12147624 5 1118 14.0 19.5 16.8 0.3 1139 chr2R 12146485 intron,3` UTR Hen1 +,CG8878 - chr2R 12147054 intron,exon Hen1 +,CG8878 - chr2R 12147624 intron,exon Hen1 +,CG8878 - chr2R_5_12145001 chr2R_12145001 RAL-318 442 chr2R 12145909 12145947 chr2R 12148633 12148640 7 2701 25.5 23.5 24.5 0.3 2731 chr2R 12145909 exon Hen1 + chr2R 12147274 intron,intron Hen1 +,CG8878 - chr2R 12148640 intron,exon Hen1 +,CG8878 - chr2R_7_12145001 chr2R_12145001 RAL-318 443 chr2R 12187471 12187507 chr2R 12190087 12190124 27 2620 91.5 69.5 80.5 0.3 2653 chr2R 12187471 exon Cyp6g1 + chr2R 12188798 exon Cyp6g2 - chr2R 12190124 exon Cyp6g2 - chr2R_27_12185001 chr2R_12185001 RAL-318 444 chr2R 12210135 12210156 chr2R 12210216 12210237 7 81 4.5 0.5 2.5 2.0 102 chr2R 12210135 exon Sr-CII - chr2R 12210186 intron Sr-CII - chr2R 12210237 intron Sr-CII - chr2R_7_12210001 chr2R_12210001 RAL-318 445 chr2R 12355775 12355810 chr2R 12355859 12355894 12 84 3.0 4.0 3.5 2.7 119 chr2R 12355775 intron CG30049 + chr2R 12355834 exon CG30049 + chr2R 12355894 exon CG30049 + chr2R_12_12355001 chr2R_12355001 RAL-318 446 chr2R 12417463 12417482 chr2R 12417542 12417560 6 74 1.5 7.5 4.5 1.1 97 chr2R 12417463 exon CG13157 + chr2R 12417512 exon CG13157 + chr2R 12417560 exon CG13157 + chr2R_6_12415001 chr2R_12415001 RAL-318 447 chr2R 12492109 12492122 chr2R 12492184 12492216 8 91 3.5 0.0 1.8 2.9 107 chr2R 12492109 intron fdl - chr2R 12492162 intron fdl - chr2R 12492216 intron fdl - chr2R_8_12490001 chr2R_12490001 RAL-318 448 chr2R 12501694 12501723 chr2R 12503850 12503858 Rt1c 8 2154 3.0 4.0 3.5 1.8 2164 chr2R 12501694 intron fdl - chr2R 12502776 intron fdl - chr2R 12503858 intron fdl - chr2R_8_12500001 chr2R_12500001 RAL-318 449 chr2R 12504146 12504180 chr2R 12504222 12504245 13 74 3.5 4.5 4.0 2.6 99 chr2R 12504146 intron fdl - chr2R 12504196 intron fdl - chr2R 12504245 intron fdl - chr2R_13_12500001 chr2R_12500001 RAL-318 450 chr2R 12527274 12527305 chr2R 12527483 12527514 7 209 2.5 1.0 1.8 2.5 240 chr2R 12527274 intergenic not near genes chr2R 12527394 intergenic not near genes chr2R 12527514 intergenic not near genes chr2R_7_12525001 chr2R_12525001 RAL-318 451 chr2R 12662014 12662035 chr2R 12662115 12662136 4 101 1.5 2.5 2.0 1.3 122 chr2R 12662014 intron nemy - chr2R 12662075 intron nemy - chr2R 12662136 intron nemy - chr2R_4_12660001 chr2R_12660001 RAL-318 452 chr2R 12702316 12702345 chr2R 12702396 12702398 6 76 2.0 1.0 1.5 2.4 82 chr2R 12702316 intergenic not near genes chr2R 12702357 intergenic not near genes chr2R 12702398 intergenic not near genes chr2R_6_12700001 chr2R_12700001 RAL-318 453 chr2R 12789307 12789326 chr2R 12797670 12797685 roo 4 8362 3.0 3.5 3.2 1.0 8378 chr2R 12789307 intron,3` UTR sca +,CR45137 - chr2R 12793496 intron,intron sca +,CR45137 - chr2R 12797685 intron,3` UTR sca +,CR45137 - chr2R_4_12790001 chr2R_12790001 RAL-318 454 chr2R 13136837 13136869 chr2R 13141635 13141667 Doc 13 4796 2.5 4.0 3.2 3.1 4830 chr2R 13136837 exon Cap-G + chr2R 13139252 intron Cap-G + chr2R 13141667 intron Cap-G + chr2R_13_13135001 chr2R_13135001 RAL-318 455 chr2R 13249578 13249598 chr2R 13249663 13249684 5 87 1.5 0.5 1.0 2.5 106 chr2R 13249578 intron CG4712 - chr2R 13249631 intron CG4712 - chr2R 13249684 intron CG4712 - chr2R_5_13245001 chr2R_13245001 RAL-318 456 chr2R 13257273 13257302 chr2R 13257353 13257382 9 77 1.0 3.0 2.0 3.0 109 chr2R 13257273 exon CG4716 + chr2R 13257328 exon CG4716 + chr2R 13257382 3` UTR CG4716 + chr2R_9_13255001 chr2R_13255001 RAL-318 457 chr2R 13309663 13309677 chr2R 13309781 13309795 7 118 4.0 0.0 2.0 2.3 132 chr2R 13309663 intergenic not near genes chr2R 13309729 intergenic not near genes chr2R 13309795 intergenic not near genes chr2R_7_13305001 chr2R_13305001 RAL-318 458 chr2R 13431491 13431520 chr2R 13431570 13431599 6 79 2.5 2.5 2.5 1.7 108 chr2R 13431491 intron CG42321 - chr2R 13431545 intron CG42321 - chr2R 13431599 intron CG42321 - chr2R_6_13430001 chr2R_13430001 RAL-318 459 chr2R 13432946 13432963 chr2R 13433022 13433038 6 76 1.0 2.0 1.5 2.4 92 chr2R 13432946 intron CG42321 - chr2R 13432992 intron CG42321 - chr2R 13433038 intron,5` UTR CG42321 -,CG30065 + chr2R_6_13430001 chr2R_13430001 RAL-318 460 chr2R 13547092 13547103 chr2R 13547287 13547298 4 195 4.0 1.0 2.5 1.1 206 chr2R 13547092 intron CG6145 - chr2R 13547195 intron CG6145 - chr2R 13547298 intron CG6145 - chr2R_4_13545001 chr2R_13545001 RAL-318 461 chr2R 13566263 13566279 chr2R 13566343 13566359 5 80 5.0 0.5 2.8 1.3 96 chr2R 13566263 intergenic not near genes chr2R 13566311 intergenic not near genes chr2R 13566359 intergenic not near genes chr2R_5_13565001 chr2R_13565001 RAL-318 462 chr2R 13574398 13574430 chr2R 13574479 13574511 10 78 3.5 1.0 2.2 3.1 113 chr2R 13574398 intergenic CG42808 - chr2R 13574454 intergenic CG42808 -,CR44365 + chr2R 13574511 intergenic CG42808 -,CR44365 + chr2R_10_13570001 chr2R_13570001 RAL-318 463 chr2R 13580510 13580527 chr2R 13580855 13580877 jockey 8 347 1.0 7.0 4.0 1.6 367 chr2R 13580510 3` UTR CG6191 - chr2R 13580694 3` UTR,3` UTR CG6191 -,CG45088 - chr2R 13580877 3` UTR,3` UTR CG6191 -,CG45088 - chr2R_8_13580001 chr2R_13580001 RAL-318 464 chr2R 13663605 13663637 chr2R 13663683 13663715 6 78 3.0 5.0 4.0 1.2 110 chr2R 13663605 intron fas + chr2R 13663660 intron fas + chr2R 13663715 intron fas + chr2R_6_13660001 chr2R_13660001 RAL-318 465 chr2R 13768985 13769008 chr2R 13769084 13769107 9 99 3.5 9.5 6.5 1.2 122 chr2R 13768985 intergenic not near genes chr2R 13769046 intergenic not near genes chr2R 13769107 intergenic not near genes chr2R_9_13765001 chr2R_13765001 RAL-318 466 chr2R 13905614 13905624 chr2R 13907596 13907606 Rt1a 4 1982 6.5 5.0 5.8 0.6 1992 chr2R 13905614 intron shot - chr2R 13906610 intron shot - chr2R 13907606 intron shot - chr2R_4_13905001 chr2R_13905001 RAL-318 467 chr2R 13923197 13923227 chr2R 13923288 13923317 9 86 0.5 2.5 1.5 3.6 120 chr2R 13923197 intron shot - chr2R 13923257 intron shot - chr2R 13923317 intron shot - chr2R_9_13920001 chr2R_13920001 RAL-318 468 chr2R 13925850 13925880 chr2R 13926025 13926033 8 172 1.0 2.0 1.5 3.2 183 chr2R 13925850 intron shot - chr2R 13925942 intron shot - chr2R 13926033 intron shot - chr2R_8_13925001 chr2R_13925001 RAL-318 469 chr2R 13993274 13993296 chr2R 13993353 13993375 8 78 9.5 4.5 7.0 1.0 101 chr2R 13993274 intron mam + chr2R 13993324 intron mam + chr2R 13993375 intron mam + chr2R_8_13990001 chr2R_13990001 RAL-318 470 chr2R 14252405 14252437 chr2R 14252495 14252527 6 87 3.0 1.0 2.0 2.0 122 chr2R 14252405 3` UTR Mdr50 + chr2R 14252466 3` UTR Mdr50 + chr2R 14252527 3` UTR Mdr50 + chr2R_6_14250001 chr2R_14250001 RAL-318 471 chr2R 14312054 14312058 chr2R 14312526 14312530 5 472 2.0 4.5 3.2 1.2 476 chr2R 14312054 intron Shroom + chr2R 14312292 intron Shroom + chr2R 14312530 intron Shroom + chr2R_5_14310001 chr2R_14310001 RAL-318 472 chr2R 14418988 14419016 chr2R 14419066 14419094 6 77 1.5 2.5 2.0 2.0 106 chr2R 14418988 intergenic not near genes chr2R 14419041 intergenic not near genes chr2R 14419094 intergenic not near genes chr2R_6_14415001 chr2R_14415001 RAL-318 473 chr2R 14467305 14467327 chr2R 14476463 14476485 roo 10 9156 3.5 4.5 4.0 2.0 9180 chr2R 14467305 intergenic not near genes chr2R 14471895 intergenic not near genes chr2R 14476485 5` UTR CR44462 + chr2R_10_14470001 chr2R_14470001 RAL-318 474 chr2R 14524864 14524875 chr2R 14524952 14524970 5 93 3.5 0.5 2.0 1.7 106 chr2R 14524864 intergenic not near genes chr2R 14524917 intergenic not near genes chr2R 14524970 intergenic not near genes chr2R_5_14520001 chr2R_14520001 RAL-318 475 chr2R 14530775 14530790 chr2R 14530854 14530869 4 76 2.5 7.5 5.0 0.7 94 chr2R 14530775 intron ttv + chr2R 14530822 intron ttv + chr2R 14530869 intron ttv + chr2R_4_14530001 chr2R_14530001 RAL-318 476 chr2R 14534611 14534637 chr2R 14534989 14535016 13 378 3.0 2.5 2.8 3.4 405 chr2R 14534611 intron ttv + chr2R 14534814 intron ttv + chr2R 14535016 intron ttv + chr2R_13_14530001 chr2R_14530001 RAL-318 477 chr2R 14538962 14538983 chr2R 14539036 14539044 5 72 3.0 4.5 3.8 1.0 82 chr2R 14538962 intron ttv + chr2R 14539003 intron ttv + chr2R 14539044 intron ttv + chr2R_5_14535001 chr2R_14535001 RAL-318 478 chr2R 14565557 14565588 chr2R 14565634 14565665 9 76 1.5 2.5 2.0 3.0 108 chr2R 14565557 intron ttv + chr2R 14565611 intron ttv + chr2R 14565665 intron ttv + chr2R_9_14565001 chr2R_14565001 RAL-318 479 chr2R 14746517 14746532 chr2R 14746635 14746650 4 118 2.0 2.5 2.2 1.2 133 chr2R 14746517 3` UTR Dro + chr2R 14746584 3` UTR Dro + chr2R 14746650 3` UTR Dro + chr2R_4_14745001 chr2R_14745001 RAL-318 480 chr2R 14803477 14803504 chr2R 14803557 14803584 5 80 0.0 1.5 0.8 2.8 107 chr2R 14803477 intron kn - chr2R 14803530 intron kn - chr2R 14803584 intron kn - chr2R_5_14800001 chr2R_14800001 RAL-318 481 chr2R 14820904 14820931 chr2R 14820981 14821008 8 76 3.5 3.0 3.2 1.9 104 chr2R 14820904 intergenic not near genes chr2R 14820956 intergenic not near genes chr2R 14821008 intergenic not near genes chr2R_8_14820001 chr2R_14820001 RAL-318 482 chr2R 14850059 14850088 chr2R 14850165 14850194 11 104 24.0 18.5 21.2 0.5 135 chr2R 14850059 exon SMC2 - chr2R 14850126 intron SMC2 - chr2R 14850194 exon SMC2 - chr2R_11_14850001 chr2R_14850001 RAL-318 483 chr2R 14855030 14855062 chr2R 14855122 14855154 6 92 3.0 1.0 2.0 2.0 124 chr2R 14855030 5` UTR Ciao1 - chr2R 14855092 intergenic Ciao1 -,HPS1 + chr2R 14855154 intergenic Ciao1 -,HPS1 + chr2R_6_14855001 chr2R_14855001 RAL-318 484 chr2R 14922156 14922160 chr2R 14922227 14922236 4 74 2.0 4.5 3.2 1.0 80 chr2R 14922156 intron CG10249 - chr2R 14922196 intron CG10249 - chr2R 14922236 intron CG10249 - chr2R_4_14920001 chr2R_14920001 RAL-318 485 chr2R 14987384 14987416 chr2R 14987528 14987559 7 144 1.5 1.5 1.5 2.8 175 chr2R 14987384 intron pcs + chr2R 14987472 intron pcs + chr2R 14987559 intron pcs + chr2R_7_14985001 chr2R_14985001 RAL-318 486 chr2R 15004732 15004757 chr2R 15005061 15005086 jockey 4 329 2.0 3.5 2.8 1.1 354 chr2R 15004732 intergenic not near genes chr2R 15004909 intergenic not near genes chr2R 15005086 intergenic not near genes chr2R_4_15000001 chr2R_15000001 RAL-318 487 chr2R 15015460 15015466 chr2R 15022884 15022890 mdg1 4 7424 11.0 0.5 5.8 0.6 7430 chr2R 15015460 intron hbs + chr2R 15019175 intron hbs + chr2R 15022890 intron hbs + chr2R_4_15015001 chr2R_15015001 RAL-318 488 chr2R 15054756 15054768 chr2R 15054810 15054845 4 71 7.0 3.5 5.2 0.6 89 chr2R 15054756 intergenic not near genes chr2R 15054800 intergenic not near genes chr2R 15054845 intergenic not near genes chr2R_4_15050001 chr2R_15050001 RAL-318 489 chr2R 15073123 15073132 chr2R 15073206 15073215 5 83 0.5 2.5 1.5 2.0 92 chr2R 15073123 intergenic not near genes chr2R 15073169 intergenic not near genes chr2R 15073215 intergenic not near genes chr2R_5_15070001 chr2R_15070001 RAL-318 490 chr2R 15084978 15085001 chr2R 15092027 15092049 297 4 7048 3.5 1.5 2.5 1.1 7071 chr2R 15084978 intergenic not near genes chr2R 15088514 intergenic not near genes chr2R 15092049 5` UTR CR44457 + chr2R_4_15085001 chr2R_15085001 RAL-318 491 chr2R 15105187 15105210 chr2R 15105279 15105301 6 91 5.5 3.0 4.2 1.2 114 chr2R 15105187 intergenic not near genes chr2R 15105244 intergenic not near genes chr2R 15105301 intergenic not near genes chr2R_6_15105001 chr2R_15105001 RAL-318 492 chr2R 15119318 15119344 chr2R 15127798 15127825 Tirant 11 8477 4.0 2.5 3.2 2.6 8507 chr2R 15119318 intron chn + chr2R 15123572 intron chn + chr2R 15127825 intron chn + chr2R_11_15120001 chr2R_15120001 RAL-318 493 chr2R 15137969 15138004 chr2R 15138047 15138052 8 76 1.0 0.0 0.5 5.3 83 chr2R 15137969 intron chn + chr2R 15138010 intron chn + chr2R 15138052 intron chn + chr2R_8_15135001 chr2R_15135001 RAL-318 494 chr2R 15165827 15165854 chr2R 15167498 15167526 10 1670 1.5 4.5 3.0 2.5 1699 chr2R 15165827 intron igl + chr2R 15166676 intron igl + chr2R 15167526 intron igl + chr2R_10_15165001 chr2R_15165001 RAL-318 495 chr2R 15168272 15168299 chr2R 15168365 15168372 7 90 2.5 1.0 1.8 2.5 100 chr2R 15168272 intron igl + chr2R 15168322 intron igl + chr2R 15168372 intron igl + chr2R_7_15165001 chr2R_15165001 RAL-318 496 chr2R 15294866 15294888 chr2R 15294950 15294958 6 84 3.0 4.5 3.8 1.2 92 chr2R 15294866 intron,3` UTR Trpm -,CR44241 - chr2R 15294912 intron,3` UTR Trpm -,CR44241 - chr2R 15294958 intron,3` UTR Trpm -,CR44241 - chr2R_6_15290001 chr2R_15290001 RAL-318 497 chr2R 15296159 15296323 chr2R 15296242 15296431 15 94 3.0 2.0 2.5 4.3 272 chr2R 15296159 intron Trpm - chr2R 15296295 intron Trpm - chr2R 15296431 intron Trpm - chr2R_15_15295001 chr2R_15295001 RAL-318 498 chr2R 15336282 15336316 chr2R 15336360 15336381 13 76 0.5 4.0 2.2 4.1 99 chr2R 15336282 intron Hr51 + chr2R 15336332 intron Hr51 + chr2R 15336381 intron Hr51 + chr2R_13_15335001 chr2R_15335001 RAL-318 499 chr2R 15421192 15421213 chr2R 15421282 15421298 7 88 2.5 2.5 2.5 2.0 106 chr2R 15421192 intron CG43729 + chr2R 15421245 intron CG43729 + chr2R 15421298 intron CG43729 + chr2R_7_15420001 chr2R_15420001 RAL-318 500 chr2R 15428454 15428482 chr2R 15428539 15428567 5 85 4.0 1.5 2.8 1.3 113 chr2R 15428454 intron CG43729 + chr2R 15428510 intron CG43729 + chr2R 15428567 intron CG43729 + chr2R_5_15425001 chr2R_15425001 RAL-318 501 chr2R 15656032 15656069 chr2R 15656122 15656160 4 90 0.0 1.5 0.8 2.2 128 chr2R 15656032 intron CG42524 + chr2R 15656096 intron CG42524 + chr2R 15656160 intron CG42524 + chr2R_4_15655001 chr2R_15655001 RAL-318 502 chr2R 15700266 15700275 chr2R 15700348 15700366 7 91 1.5 5.0 3.2 1.7 100 chr2R 15700266 intron,5` UTR CG30080 -,CG42662 - chr2R 15700316 intron,5` UTR CG30080 -,CG42662 - chr2R 15700366 intron,5` UTR CG30080 -,CG42662 - chr2R_7_15700001 chr2R_15700001 RAL-318 503 chr2R 15720767 15720797 chr2R 15720863 15720893 7 96 2.0 2.5 2.2 2.2 126 chr2R 15720767 intergenic not near genes chr2R 15720830 intergenic not near genes chr2R 15720893 intergenic not near genes chr2R_7_15720001 chr2R_15720001 RAL-318 504 chr2R 15755223 15755251 chr2R 15755300 15755301 5 71 2.0 2.5 2.2 1.6 78 chr2R 15755223 intron CG30089 + chr2R 15755262 intron CG30089 + chr2R 15755301 intron CG30089 + chr2R_5_15755001 chr2R_15755001 RAL-318 505 chr2R 15987968 15987983 chr2R 15988046 15988062 5 78 3.0 2.5 2.8 1.3 94 chr2R 15987968 intron,5` UTR Strn-Mlck -,CR45021 + chr2R 15988015 intron,5` UTR Strn-Mlck -,CR45021 + chr2R 15988062 intron,5` UTR Strn-Mlck -,CR45021 + chr2R_5_15985001 chr2R_15985001 RAL-318 506 chr2R 16243596 16243619 chr2R 16243707 16243730 4 111 1.5 1.5 1.5 1.6 134 chr2R 16243596 3` UTR CngA - chr2R 16243663 3` UTR CngA - chr2R 16243730 3` UTR CngA - chr2R_4_16240001 chr2R_16240001 RAL-318 507 chr2R 16539637 16539667 chr2R 16544846 16544876 copia 4 5209 1.0 1.5 1.2 1.8 5239 chr2R 16539637 intergenic not near genes chr2R 16542256 intergenic not near genes chr2R 16544876 intergenic not near genes chr2R_4_16540001 chr2R_16540001 RAL-318 508 chr2R 16617059 16617089 chr2R 16617137 16617168 9 79 1.0 1.0 1.0 4.5 109 chr2R 16617059 intron CG5065 + chr2R 16617114 intron CG5065 + chr2R 16617168 intron CG5065 + chr2R_9_16615001 chr2R_16615001 RAL-318 509 chr2R 16619977 16620000 chr2R 16620058 16620080 6 81 2.5 0.0 1.2 2.7 103 chr2R 16619977 intron CG5065 + chr2R 16620028 intron CG5065 + chr2R 16620080 intron CG5065 + chr2R_6_16620001 chr2R_16620001 RAL-318 510 chr2R 16683939 16683955 chr2R 16684289 16684320 4 361 2.0 1.5 1.8 1.4 381 chr2R 16683939 intron CG30463 - chr2R 16684130 intron CG30463 - chr2R 16684320 intron CG30463 - chr2R_4_16680001 chr2R_16680001 RAL-318 511 chr2R 17147249 17147264 chr2R 17152280 17152295 jockey 4 5031 3.5 5.5 4.5 0.7 5046 chr2R 17147249 intergenic not near genes chr2R 17149772 intergenic not near genes chr2R 17152295 intergenic not near genes chr2R_4_17145001 chr2R_17145001 RAL-318 512 chr2R 17161356 17161361 chr2R 17161563 17161568 4 207 4.0 0.0 2.0 1.3 212 chr2R 17161356 intergenic not near genes chr2R 17161462 intergenic not near genes chr2R 17161568 intergenic not near genes chr2R_4_17160001 chr2R_17160001 RAL-318 513 chr2R 17176355 17176380 chr2R 17182544 17182563 diver 4 6188 1.0 1.5 1.2 1.8 6208 chr2R 17176355 intergenic not near genes chr2R 17179459 intergenic not near genes chr2R 17182563 intergenic not near genes chr2R_4_17175001 chr2R_17175001 RAL-318 514 chr2R 17236506 17236538 chr2R 17241710 17241742 copia 9 5202 3.0 6.0 4.5 1.6 5236 chr2R 17236506 intron mbl + chr2R 17239124 intron mbl + chr2R 17241742 intron mbl + chr2R_9_17235001 chr2R_17235001 RAL-318 515 chr2R 17395281 17395306 chr2R 17395359 17395394 4 83 0.5 0.0 0.2 3.3 113 chr2R 17395281 intron Sip1 + chr2R 17395338 intron Sip1 + chr2R 17395394 intron Sip1 + chr2R_4_17395001 chr2R_17395001 RAL-318 516 chr2R 17556442 17556455 chr2R 17556527 17556540 4 85 3.5 5.0 4.2 0.8 98 chr2R 17556442 intergenic MESR4 + chr2R 17556491 intergenic MESR4 + chr2R 17556540 intergenic MESR4 +,Klp54D + chr2R_4_17555001 chr2R_17555001 RAL-318 517 chr2R 17627754 17627785 chr2R 17628080 17628112 10 327 3.5 4.0 3.8 2.1 358 chr2R 17627754 intron CG10936 - chr2R 17627933 intron CG10936 - chr2R 17628112 intron CG10936 - chr2R_10_17625001 chr2R_17625001 RAL-318 518 chr2R 17663660 17663683 chr2R 17663737 17663755 7 76 3.5 3.5 3.5 1.6 95 chr2R 17663660 intron CCHa1-R - chr2R 17663708 intron CCHa1-R - chr2R 17663755 intron CCHa1-R - chr2R_7_17660001 chr2R_17660001 RAL-318 519 chr2R 17782382 17782390 chr2R 17783585 17783593 pogo 4 1203 0.5 3.0 1.8 1.4 1211 chr2R 17782382 intergenic CG33981 -,fab1 - chr2R 17782988 intergenic not near genes chr2R 17783593 intergenic mir-31a - chr2R_4_17780001 chr2R_17780001 RAL-318 520 chr2R 17852401 17852424 chr2R 17852495 17852529 11 102 2.0 2.5 2.2 3.4 128 chr2R 17852401 intron olf186-F + chr2R 17852465 intron olf186-F + chr2R 17852529 intron olf186-F + chr2R_11_17850001 chr2R_17850001 RAL-318 521 chr2R 18021545 18021549 chr2R 18022032 18022036 4 488 22.5 13.0 17.8 0.2 491 chr2R 18021545 exon CG10910 + chr2R 18021790 exon CG10910 + chr2R 18022036 exon CG10910 + chr2R_4_18020001 chr2R_18020001 RAL-318 522 chr2R 18035417 18035432 chr2R 18035488 18035507 6 71 9.5 5.5 7.5 0.7 90 chr2R 18035417 intergenic not near genes chr2R 18035462 intergenic not near genes chr2R 18035507 intergenic not near genes chr2R_6_18035001 chr2R_18035001 RAL-318 523 chr2R 18045301 18045313 chr2R 18045509 18045518 5 206 6.0 2.0 4.0 1.0 217 chr2R 18045301 intergenic CG5770 - chr2R 18045410 intergenic CG5770 - chr2R 18045518 intergenic CG5770 - chr2R_5_18045001 chr2R_18045001 RAL-318 524 chr2R 18358401 18358421 chr2R 18372608 18372633 roo 4 14211 0.5 6.0 3.2 1.0 14232 chr2R 18358401 intergenic not near genes chr2R 18365517 intergenic not near genes chr2R 18372633 intergenic not near genes chr2R_4_18365001 chr2R_18365001 RAL-318 525 chr2R 18402455 18402485 chr2R 18402644 18402667 7 182 4.0 3.0 3.5 1.6 212 chr2R 18402455 intergenic not near genes chr2R 18402561 intergenic not near genes chr2R 18402667 intergenic not near genes chr2R_7_18400001 chr2R_18400001 RAL-318 526 chr2R 18477746 18477762 chr2R 18477826 18477843 6 82 1.0 5.0 3.0 1.5 97 chr2R 18477746 intron CG30116 - chr2R 18477794 intron CG30116 - chr2R 18477843 intron CG30116 - chr2R_6_18475001 chr2R_18475001 RAL-318 527 chr2R 18486847 18486880 chr2R 18487107 18487141 9 258 1.0 1.5 1.2 4.1 294 chr2R 18486847 intron CG30116 - chr2R 18486994 intron CG30116 - chr2R 18487141 intron CG30116 - chr2R_9_18485001 chr2R_18485001 RAL-318 528 chr2R 18487848 18487853 chr2R 18495306 18495322 blood 5 7467 0.0 2.5 1.2 2.3 7474 chr2R 18487848 intron CG30116 - chr2R 18491585 intron CG30116 - chr2R 18495322 intron CG30116 - chr2R_5_18490001 chr2R_18490001 RAL-318 529 chr2R 18575817 18575825 chr2R 18581986 18582010 3S18 5 6183 5.5 3.0 4.2 1.0 6193 chr2R 18575817 intron GEFmeso - chr2R 18578914 intron GEFmeso - chr2R 18582010 intron GEFmeso - chr2R_5_18575001 chr2R_18575001 RAL-318 530 chr2R 18590872 18590901 chr2R 18600024 18600052 roo 10 9150 1.5 1.0 1.2 4.5 9180 chr2R 18590872 intron GEFmeso - chr2R 18595462 intron GEFmeso - chr2R 18600052 intron GEFmeso - chr2R_10_18595001 chr2R_18595001 RAL-318 531 chr2R 18713238 18713273 chr2R 18713315 18713350 11 77 4.0 2.5 3.2 2.6 112 chr2R 18713238 intergenic not near genes chr2R 18713294 intergenic not near genes chr2R 18713350 intergenic not near genes chr2R_11_18710001 chr2R_18710001 RAL-318 532 chr2R 18871653 18871676 chr2R 18871738 18871761 6 80 2.5 0.0 1.2 2.7 108 chr2R 18871653 intergenic not near genes chr2R 18871707 intergenic not near genes chr2R 18871761 intergenic not near genes chr2R_6_18870001 chr2R_18870001 RAL-318 533 chr2R 18924295 18924304 chr2R 18924374 18924376 6 78 1.5 7.0 4.2 1.2 81 chr2R 18924295 intron sano + chr2R 18924336 intron sano + chr2R 18924376 intron sano + chr2R_6_18920001 chr2R_18920001 RAL-318 534 chr2R 18992016 18992049 chr2R 18992157 18992174 7 138 4.0 0.5 2.2 2.2 158 chr2R 18992016 intron tn + chr2R 18992095 intron tn + chr2R 18992174 intron tn + chr2R_7_18990001 chr2R_18990001 RAL-318 535 chr2R 19253096 19253127 chr2R 19253185 19253207 4 87 0.5 0.5 0.5 2.7 111 chr2R 19253096 intron CG33453 - chr2R 19253152 exon CG33453 - chr2R 19253207 5` UTR CG33453 - chr2R_4_19250001 chr2R_19250001 RAL-318 536 chr2R 19287338 19287366 chr2R 19287587 19287613 9 243 3.0 7.5 5.2 1.5 275 chr2R 19287338 intergenic not near genes chr2R 19287476 intergenic not near genes chr2R 19287613 intergenic CG18606 + chr2R_9_19285001 chr2R_19285001 RAL-318 537 chr2R 19300967 19300992 chr2R 19301050 19301075 8 83 2.0 2.5 2.2 2.5 108 chr2R 19300967 intron Tab2 + chr2R 19301021 intron Tab2 + chr2R 19301075 intron Tab2 + chr2R_8_19300001 chr2R_19300001 RAL-318 538 chr2R 19322232 19322248 chr2R 19322464 19322480 8 231 5.5 4.0 4.8 1.4 248 chr2R 19322232 intron Rgk1 - chr2R 19322356 intron Rgk1 - chr2R 19322480 intron Rgk1 - chr2R_8_19320001 chr2R_19320001 RAL-318 539 chr2R 19322250 19322268 chr2R 19322461 19322500 5 220 3.5 4.0 3.8 1.0 250 chr2R 19322250 intron Rgk1 - chr2R 19322375 intron Rgk1 - chr2R 19322500 intron Rgk1 - chr2R_5_19320001 chr2R_19320001 RAL-318 540 chr2R 19676657 19676679 chr2R 19676748 19676770 4 90 4.5 3.5 4.0 0.8 113 chr2R 19676657 intergenic not near genes chr2R 19676714 intergenic not near genes chr2R 19676770 intergenic not near genes chr2R_4_19675001 chr2R_19675001 RAL-318 541 chr2R 19714705 19714732 chr2R 19714781 19714808 4 76 0.5 1.0 0.8 2.2 103 chr2R 19714705 3` UTR CG8517 + chr2R 19714756 3` UTR CG8517 + chr2R 19714808 3` UTR CG8517 + chr2R_4_19710001 chr2R_19710001 RAL-318 542 chr2R 19776608 19776628 chr2R 19779931 19779949 jockey 8 3322 5.0 3.0 4.0 1.6 3341 chr2R 19776608 intergenic not near genes chr2R 19778278 intergenic not near genes chr2R 19779949 intergenic not near genes chr2R_8_19775001 chr2R_19775001 RAL-318 543 chr2R 19897106 19897120 chr2R 19897179 19897186 13 79 2.0 2.5 2.2 4.1 80 chr2R 19897106 intergenic CR44572 - chr2R 19897146 intergenic CR44572 - chr2R 19897186 intergenic CR44572 - chr2R_13_19895001 chr2R_19895001 RAL-318 544 chr2R 19914844 19914872 chr2R 19922256 19922284 mdg1 10 7412 2.5 0.5 1.5 4.0 7440 chr2R 19914844 intergenic not near genes chr2R 19918564 intergenic not near genes chr2R 19922284 intergenic not near genes chr2R_10_19915001 chr2R_19915001 RAL-318 545 chr2R 19943270 19943291 chr2R 19943380 19943401 7 110 1.5 2.0 1.8 2.5 131 chr2R 19943270 intergenic not near genes chr2R 19943336 intergenic not near genes chr2R 19943401 intergenic not near genes chr2R_7_19940001 chr2R_19940001 RAL-318 546 chr2R 19957428 19957463 chr2R 19962630 19962665 copia 11 5201 3.5 1.5 2.5 3.1 5237 chr2R 19957428 intergenic CG44623 + chr2R 19960046 intergenic not near genes chr2R 19962665 intergenic not near genes chr2R_11_19960001 chr2R_19960001 RAL-318 547 chr2R 20069242 20069259 chr2R 20071872 20071889 opus 5 2630 6.0 4.5 5.2 0.8 2647 chr2R 20069242 intergenic not near genes chr2R 20070566 intergenic not near genes chr2R 20071889 intergenic not near genes chr2R_5_20070001 chr2R_20070001 RAL-318 548 chr2R 20174646 20174673 chr2R 20174721 20174749 5 76 3.0 2.5 2.8 1.3 103 chr2R 20174646 intergenic not near genes chr2R 20174698 intergenic not near genes chr2R 20174749 intergenic not near genes chr2R_5_20170001 chr2R_20170001 RAL-318 549 chr2R 20179020 20179025 chr2R 20179098 20179103 5 78 11.0 2.5 6.8 0.6 83 chr2R 20179020 intergenic not near genes chr2R 20179062 intergenic not near genes chr2R 20179103 intergenic not near genes chr2R_5_20175001 chr2R_20175001 RAL-318 550 chr2R 20179031 20179052 chr2R 20179097 20179130 8 72 5.0 2.0 3.5 1.8 99 chr2R 20179031 intergenic not near genes chr2R 20179080 intergenic not near genes chr2R 20179130 intergenic not near genes chr2R_8_20175001 chr2R_20175001 RAL-318 551 chr2R 20223950 20223973 chr2R 20224035 20224058 10 84 3.0 0.5 1.8 3.6 108 chr2R 20223950 intergenic not near genes chr2R 20224004 intergenic not near genes chr2R 20224058 intergenic not near genes chr2R_10_20220001 chr2R_20220001 RAL-318 552 chr2R 20251047 20251070 chr2R 20251500 20251532 9 458 2.5 3.5 3.0 2.2 485 chr2R 20251047 intron CG9864 - chr2R 20251290 intron CG9864 - chr2R 20251532 intron CG9864 - chr2R_9_20250001 chr2R_20250001 RAL-318 553 chr2R 20382346 20382357 chr2R 20382422 20382439 5 80 3.5 3.5 3.5 1.1 93 chr2R 20382346 intergenic not near genes chr2R 20382392 intergenic not near genes chr2R 20382439 intergenic not near genes chr2R_5_20380001 chr2R_20380001 RAL-318 554 chr2R 20395026 20395059 chr2R 20395198 20395235 7 173 3.0 0.0 1.5 2.8 209 chr2R 20395026 intergenic not near genes chr2R 20395130 intergenic not near genes chr2R 20395235 intergenic not near genes chr2R_7_20395001 chr2R_20395001 RAL-318 555 chr2R 20463664 20463695 chr2R 20463745 20463774 8 76 2.0 5.0 3.5 1.8 110 chr2R 20463664 intron CG12484 + chr2R 20463719 intron CG12484 + chr2R 20463774 intron CG12484 + chr2R_8_20460001 chr2R_20460001 RAL-318 556 chr2R 20523040 20523071 chr2R 20523150 20523182 6 111 1.5 2.5 2.0 2.0 142 chr2R 20523040 intergenic not near genes chr2R 20523111 intergenic not near genes chr2R 20523182 intergenic not near genes chr2R_6_20520001 chr2R_20520001 RAL-318 557 chr2R 20572571 20572581 chr2R 20572661 20572665 5 88 4.0 3.0 3.5 1.1 94 chr2R 20572571 intron qsm - chr2R 20572618 intron qsm - chr2R 20572665 intron qsm - chr2R_5_20570001 chr2R_20570001 RAL-318 558 chr2R 20651590 20651614 chr2R 20651674 20651675 6 75 3.5 3.0 3.2 1.4 85 chr2R 20651590 intron Lrt + chr2R 20651632 intron Lrt + chr2R 20651675 intron Lrt + chr2R_6_20650001 chr2R_20650001 RAL-318 559 chr2R 20651619 20651624 chr2R 20651673 20651708 4 68 0.5 3.0 1.8 1.4 89 chr2R 20651619 intron Lrt + chr2R 20651664 intron Lrt + chr2R 20651708 intron Lrt + chr2R_4_20650001 chr2R_20650001 RAL-318 560 chr2R 20706938 20706969 chr2R 20707029 20707060 11 89 2.5 3.5 3.0 2.8 122 chr2R 20706938 intron dpr + chr2R 20706999 intron dpr + chr2R 20707060 intron dpr + chr2R_11_20705001 chr2R_20705001 RAL-318 561 chr2R 20739442 20739475 chr2R 20744210 20744243 F-element 10 4766 4.5 4.0 4.2 1.9 4801 chr2R 20739442 intron dpr + chr2R 20741842 intron dpr + chr2R 20744243 intron dpr + chr2R_10_20740001 chr2R_20740001 RAL-318 562 chr2R 21109717 21109751 chr2R 21109798 21109830 8 79 2.5 5.0 3.8 1.7 113 chr2R 21109717 intron ktub + chr2R 21109774 intron ktub + chr2R 21109830 intron ktub + chr2R_8_21105001 chr2R_21105001 RAL-318 563 chr2R 21110788 21110821 chr2R 21110881 21110913 11 91 3.0 3.5 3.2 2.6 125 chr2R 21110788 intron ktub + chr2R 21110850 intron ktub + chr2R 21110913 intron ktub + chr2R_11_21110001 chr2R_21110001 RAL-318 564 chr2R 21158894 21158902 chr2R 21159018 21159026 6 124 3.0 3.0 3.0 1.5 132 chr2R 21158894 intron CG30389 - chr2R 21158960 intron CG30389 - chr2R 21159026 intron CG30389 - chr2R_6_21155001 chr2R_21155001 RAL-318 565 chr2R 21182928 21182933 chr2R 21183153 21183158 4 226 3.0 2.5 2.8 1.1 230 chr2R 21182928 intergenic Pu +,tud + chr2R 21183043 intergenic tud +,Pu + chr2R 21183158 intergenic tud + chr2R_4_21180001 chr2R_21180001 RAL-318 566 chr2R 21221014 21221041 chr2R 21221101 21221133 7 88 2.0 2.5 2.2 2.2 119 chr2R 21221014 exon ASPP - chr2R 21221074 exon ASPP - chr2R 21221133 exon ASPP - chr2R_7_21220001 chr2R_21220001 RAL-318 567 chr2R 21251819 21251848 chr2R 21252046 21252075 4 227 3.0 3.0 3.0 1.0 256 chr2R 21251819 intergenic not near genes chr2R 21251947 intergenic not near genes chr2R 21252075 intergenic not near genes chr2R_4_21250001 chr2R_21250001 RAL-318 568 chr2R 21455094 21455111 chr2R 21455457 21455473 6 360 1.0 1.5 1.2 2.7 379 chr2R 21455094 intron Sdc - chr2R 21455284 intron Sdc - chr2R 21455473 intron Sdc - chr2R_6_21455001 chr2R_21455001 RAL-318 569 chr2R 21721576 21721581 chr2R 21721664 21721669 4 88 4.5 0.0 2.2 1.2 93 chr2R 21721576 intron LBR + chr2R 21721622 intron LBR + chr2R 21721669 intron LBR + chr2R_4_21720001 chr2R_21720001 RAL-318 570 chr2R 21726703 21726706 chr2R 21726801 21726804 5 98 3.0 0.0 1.5 2.0 101 chr2R 21726703 intergenic not near genes chr2R 21726754 intergenic not near genes chr2R 21726804 intergenic not near genes chr2R_5_21725001 chr2R_21725001 RAL-318 571 chr2R 21738278 21738310 chr2R 21747436 21747470 roo 10 9156 1.0 5.0 3.0 2.5 9192 chr2R 21738278 intergenic not near genes chr2R 21742874 intergenic not near genes chr2R 21747470 intergenic not near genes chr2R_10_21740001 chr2R_21740001 RAL-318 572 chr2R 21753088 21753114 chr2R 21753568 21753599 roo 11 483 4.5 3.0 3.8 2.3 511 chr2R 21753088 intergenic not near genes chr2R 21753344 intergenic not near genes chr2R 21753599 intergenic not near genes chr2R_11_21750001 chr2R_21750001 RAL-318 573 chr2R 21880611 21880636 chr2R 21880710 21880734 4 98 2.5 2.5 2.5 1.1 123 chr2R 21880611 intron Fili + chr2R 21880672 intron Fili + chr2R 21880734 intron Fili + chr2R_4_21880001 chr2R_21880001 RAL-318 574 chr2R 21906278 21906303 chr2R 21906379 21906404 6 101 1.5 2.0 1.8 2.1 126 chr2R 21906278 intron Fili + chr2R 21906341 intron Fili + chr2R 21906404 intron Fili + chr2R_6_21905001 chr2R_21905001 RAL-318 575 chr2R 21936397 21936424 chr2R 21936625 21936648 9 226 4.5 0.5 2.5 2.6 251 chr2R 21936397 intron,exon Fili +,CG43742 - chr2R 21936522 intron,intron Fili +,CG43742 - chr2R 21936648 intron,exon Fili +,CG43742 - chr2R_9_21935001 chr2R_21935001 RAL-318 576 chr2R 21985544 21985563 chr2R 21985622 21985644 5 80 2.5 1.0 1.8 1.8 100 chr2R 21985544 intergenic CG30401 - chr2R 21985594 intergenic CG30401 - chr2R 21985644 3` UTR CG30401 - chr2R_5_21985001 chr2R_21985001 RAL-318 577 chr2R 22014218 22014232 chr2R 22014273 22014308 7 70 5.0 2.0 3.5 1.6 90 chr2R 22014218 intron CG34370 - chr2R 22014263 intron CG34370 - chr2R 22014308 intron CG34370 - chr2R_7_22010001 chr2R_22010001 RAL-318 578 chr2R 22072681 22072713 chr2R 22072766 22072798 8 84 0.5 2.5 1.5 3.2 117 chr2R 22072681 intron CG11474 - chr2R 22072740 intron CG11474 - chr2R 22072798 exon CG11474 - chr2R_8_22070001 chr2R_22070001 RAL-318 579 chr2R 22109289 22109317 chr2R 22109362 22109393 9 75 2.5 1.5 2.0 3.0 104 chr2R 22109289 intron Vrp1 - chr2R 22109341 intron Vrp1 - chr2R 22109393 intron Vrp1 - chr2R_9_22105001 chr2R_22105001 RAL-318 580 chr2R 22153764 22153772 chr2R 22153841 22153849 4 77 3.5 0.0 1.8 1.4 85 chr2R 22153764 intron a + chr2R 22153806 intron a + chr2R 22153849 intron a + chr2R_4_22150001 chr2R_22150001 RAL-318 581 chr2R 22243068 22243092 chr2R 22243146 22243165 7 79 2.0 4.5 3.2 1.7 97 chr2R 22243068 intergenic not near genes chr2R 22243116 intergenic not near genes chr2R 22243165 intergenic not near genes chr2R_7_22240001 chr2R_22240001 RAL-318 582 chr2R 22290093 22290105 chr2R 22290177 22290188 6 84 1.5 2.5 2.0 2.0 95 chr2R 22290093 intergenic not near genes chr2R 22290140 intergenic not near genes chr2R 22290188 intergenic not near genes chr2R_6_22290001 chr2R_22290001 RAL-318 583 chr2R 22349704 22349726 chr2R 22351487 22351503 jockey 6 1783 3.0 6.5 4.8 1.0 1799 chr2R 22349704 intron Liprin-gamma - chr2R 22350604 intron Liprin-gamma - chr2R 22351503 intron Liprin-gamma - chr2R_6_22350001 chr2R_22350001 RAL-318 584 chr2R 22360385 22360398 chr2R 22360818 22360831 jockey 6 433 5.5 3.5 4.5 1.1 446 chr2R 22360385 intron Liprin-gamma - chr2R 22360608 intron Liprin-gamma - chr2R 22360831 intron Liprin-gamma - chr2R_6_22360001 chr2R_22360001 RAL-318 585 chr2R 22499855 22499884 chr2R 22499929 22499960 7 76 0.0 3.5 1.8 2.5 105 chr2R 22499855 intron px - chr2R 22499908 intron px - chr2R 22499960 intron px - chr2R_7_22495001 chr2R_22495001 RAL-318 586 chr2R 22513842 22513855 chr2R 22513897 22513922 5 66 1.0 6.0 3.5 1.1 80 chr2R 22513842 intron px - chr2R 22513882 intron px - chr2R 22513922 intron px - chr2R_5_22510001 chr2R_22510001 RAL-318 587 chr2R 22525751 22525783 chr2R 22529306 22529338 jockey 6 3554 2.5 4.0 3.2 1.4 3587 chr2R 22525751 intron px - chr2R 22527544 intron px - chr2R 22529338 intron px - chr2R_6_22525001 chr2R_22525001 RAL-318 588 chr2R 22683451 22683457 chr2R 22683532 22683538 5 81 8.0 4.0 6.0 0.7 87 chr2R 22683451 intergenic not near genes chr2R 22683494 intergenic not near genes chr2R 22683538 intergenic not near genes chr2R_5_22680001 chr2R_22680001 RAL-318 589 chr2R 22757234 22757243 chr2R 22757491 22757517 6 266 4.5 2.0 3.2 1.4 283 chr2R 22757234 intron,intron CG42260 -,CR30267 + chr2R 22757376 intron,intron CG42260 -,CR30267 + chr2R 22757517 intron,intron CG42260 -,CR30267 + chr2R_6_22755001 chr2R_22755001 RAL-318 590 chr2R 22774960 22775000 chr2R 22775379 22775419 jockey 8 418 4.5 1.5 3.0 2.0 459 chr2R 22774960 intron CG42260 - chr2R 22775190 intron CG42260 - chr2R 22775419 intron CG42260 - chr2R_8_22775001 chr2R_22775001 RAL-318 591 chr2R 22907402 22907434 chr2R 22907494 22907527 8 91 4.5 4.5 4.5 1.5 125 chr2R 22907402 intron nahoda + chr2R 22907464 intron nahoda + chr2R 22907527 intron nahoda + chr2R_8_22905001 chr2R_22905001 RAL-318 592 chr2R 22941820 22941856 chr2R 22941899 22941905 6 74 0.5 2.5 1.5 2.4 85 chr2R 22941820 intergenic CG42694 + chr2R 22941862 intergenic CG42694 + chr2R 22941905 5` UTR CG42694 + chr2R_6_22940001 chr2R_22940001 RAL-318 593 chr2R 22971496 22971531 chr2R 22971575 22971610 9 77 2.0 1.5 1.8 3.2 114 chr2R 22971496 intergenic not near genes chr2R 22971553 intergenic not near genes chr2R 22971610 intergenic not near genes chr2R_9_22970001 chr2R_22970001 RAL-318 594 chr2R 22991629 22991659 chr2R 22991721 22991743 7 91 1.5 2.5 2.0 2.3 114 chr2R 22991629 intron twi + chr2R 22991686 intron twi + chr2R 22991743 intron twi + chr2R_7_22990001 chr2R_22990001 RAL-318 595 chr2R 23052656 23052685 chr2R 23052732 23052760 6 76 1.5 2.5 2.0 2.0 104 chr2R 23052656 intergenic not near genes chr2R 23052708 intergenic not near genes chr2R 23052760 intergenic not near genes chr2R_6_23050001 chr2R_23050001 RAL-318 596 chr2R 23188563 23188588 chr2R 23188641 23188664 4 78 0.5 2.0 1.2 1.8 101 chr2R 23188563 intron CG34371 - chr2R 23188614 intron CG34371 - chr2R 23188664 intron CG34371 - chr2R_4_23185001 chr2R_23185001 RAL-318 597 chr2R 23190017 23190051 chr2R 23190097 23190131 4 80 2.0 0.5 1.2 1.8 114 chr2R 23190017 intron CG34371 - chr2R 23190074 intron CG34371 - chr2R 23190131 intron CG34371 - chr2R_4_23190001 chr2R_23190001 RAL-318 598 chr2R 23246003 23246037 chr2R 23246089 23246113 8 84 4.5 3.5 4.0 1.6 110 chr2R 23246003 intergenic not near genes chr2R 23246058 intergenic not near genes chr2R 23246113 intergenic RpL22-like - chr2R_8_23245001 chr2R_23245001 RAL-318 599 chr2R 23269518 23269539 chr2R 23269662 23269686 5 146 3.0 1.5 2.2 1.6 168 chr2R 23269518 intergenic not near genes chr2R 23269602 intergenic not near genes chr2R 23269686 intergenic not near genes chr2R_5_23265001 chr2R_23265001 RAL-318 600 chr2R 23278264 23278293 chr2R 23278472 23278501 9 208 3.0 0.0 1.5 3.6 237 chr2R 23278264 intergenic not near genes chr2R 23278382 intergenic not near genes chr2R 23278501 intergenic not near genes chr2R_9_23275001 chr2R_23275001 RAL-318 601 chr2R 23297941 23297960 chr2R 23298037 23298056 11 95 4.0 4.0 4.0 2.2 115 chr2R 23297941 intergenic not near genes chr2R 23297998 intergenic not near genes chr2R 23298056 intergenic not near genes chr2R_11_23295001 chr2R_23295001 RAL-318 602 chr2R 23427768 23427792 chr2R 23427910 23427934 11 141 3.5 6.5 5.0 1.8 166 chr2R 23427768 intron CG9815 - chr2R 23427851 intron CG9815 - chr2R 23427934 intron CG9815 - chr2R_11_23425001 chr2R_23425001 RAL-318 603 chr2R 23437230 23437247 chr2R 23437307 23437309 6 72 1.5 2.5 2.0 2.0 79 chr2R 23437230 intergenic not near genes chr2R 23437270 intergenic not near genes chr2R 23437309 intergenic not near genes chr2R_6_23435001 chr2R_23435001 RAL-318 604 chr2R 23522413 23522445 chr2R 23522492 23522520 7 71 2.0 3.0 2.5 2.0 107 chr2R 23522413 intron RabX1 - chr2R 23522466 intron RabX1 - chr2R 23522520 intron RabX1 - chr2R_7_23520001 chr2R_23520001 RAL-318 605 chr2R 23607038 23607062 chr2R 23607118 23607143 11 80 3.0 2.5 2.8 2.9 105 chr2R 23607038 intron CG17664 - chr2R 23607090 intron CG17664 - chr2R 23607143 intron CG17664 - chr2R_11_23605001 chr2R_23605001 RAL-318 606 chr2R 23668843 23668872 chr2R 23668929 23668958 18 84 2.0 4.5 3.2 4.3 115 chr2R 23668843 intron Pde8 + chr2R 23668900 intron Pde8 + chr2R 23668958 intron Pde8 + chr2R_18_23665001 chr2R_23665001 RAL-318 607 chr2R 23914299 23914326 chr2R 23921923 23921928 412 10 7621 1.5 4.5 3.0 2.5 7629 chr2R 23914299 exon kcc + chr2R 23918114 intron kcc + chr2R 23921928 intron kcc + chr2R_10_23915001 chr2R_23915001 RAL-318 608 chr2R 24031390 24031413 chr2R 24031473 24031497 7 82 3.0 3.0 3.0 1.8 107 chr2R 24031390 5` UTR CG30172 - chr2R 24031444 intergenic CG30172 -,Chi - chr2R 24031497 intergenic Chi -,CG30172 - chr2R_7_24030001 chr2R_24030001 RAL-318 609 chr2R 24138314 24138338 chr2R 24138472 24138497 7 159 2.5 7.5 5.0 1.2 183 chr2R 24138314 intergenic CG4065 -,CR44826 + chr2R 24138406 intergenic CR44826 +,CG4065 - chr2R 24138497 intergenic CR44826 +,CG4065 - chr2R_7_24135001 chr2R_24135001 RAL-318 610 chr2R 24147074 24147092 chr2R 24154652 24154667 412 5 7576 3.0 6.0 4.5 0.9 7593 chr2R 24147074 intron Dat + chr2R 24150870 intron Dat + chr2R 24154667 intron Dat + chr2R_5_24150001 chr2R_24150001 RAL-318 611 chr2R 24156686 24156706 chr2R 24156761 24156780 5 83 4.0 2.0 3.0 1.2 94 chr2R 24156686 intron Dat + chr2R 24156733 intron Dat + chr2R 24156780 intron Dat + chr2R_5_24155001 chr2R_24155001 RAL-318 612 chr2R 24177234 24177254 chr2R 24184719 24184739 412 5 7482 1.5 1.0 1.2 2.3 7505 chr2R 24177234 3` UTR Nop60B + chr2R 24180986 intron Nop60B + chr2R 24184739 3` UTR Nop60B + chr2R_5_24180001 chr2R_24180001 RAL-318 613 chr2R 24218566 24218590 chr2R 24218638 24218654 5 75 1.0 3.5 2.2 1.6 88 chr2R 24218566 intron CG30419 - chr2R 24218610 intron CG30419 - chr2R 24218654 intron CG30419 - chr2R_5_24215001 chr2R_24215001 RAL-318 614 chr2R 24287134 24287154 chr2R 24287209 24287231 5 77 1.0 2.0 1.5 2.0 97 chr2R 24287134 intron nvy + chr2R 24287182 intron nvy + chr2R 24287231 intron nvy + chr2R_5_24285001 chr2R_24285001 RAL-318 615 chr2R 24331608 24331636 chr2R 24331699 24331727 7 90 0.5 2.5 1.5 2.8 119 chr2R 24331608 3` UTR slbo - chr2R 24331668 3` UTR slbo - chr2R 24331727 3` UTR slbo - chr2R_7_24330001 chr2R_24330001 RAL-318 616 chr2R 24353429 24353445 chr2R 24361791 24361807 roo 8 8359 3.0 5.0 4.0 1.6 8378 chr2R 24353429 intron,intron bs +,CR44811 - chr2R 24357618 intron,intron bs +,CR44811 - chr2R 24361807 intron,intron bs +,CR44811 - chr2R_8_24355001 chr2R_24355001 RAL-318 617 chr2R 24430920 24430950 chr2R 24431008 24431037 6 88 0.0 1.0 0.5 4.0 117 chr2R 24430920 intergenic CG15873 -,Pgam5-2 - chr2R 24430978 intergenic CG15873 -,Pgam5-2 - chr2R 24431037 intergenic Pgam5-2 -,CG15873 - chr2R_6_24430001 chr2R_24430001 RAL-318 618 chr2R 24590110 24590144 chr2R 24590202 24590236 18 90 1.5 3.0 2.2 5.6 126 chr2R 24590110 intron pio + chr2R 24590173 intron pio + chr2R 24590236 intron pio + chr2R_18_24590001 chr2R_24590001 RAL-318 619 chr2R 24591521 24591540 chr2R 24591597 24591616 6 76 6.0 2.0 4.0 1.2 95 chr2R 24591521 intron pio + chr2R 24591568 intron pio + chr2R 24591616 intron pio + chr2R_6_24590001 chr2R_24590001 RAL-318 620 chr2R 24647606 24647618 chr2R 24655162 24655175 412 8 7557 0.0 3.5 1.8 2.9 7569 chr2R 24647606 intergenic not near genes chr2R 24651390 intergenic not near genes chr2R 24655175 intergenic not near genes chr2R_8_24650001 chr2R_24650001 RAL-318 621 chr2R 24689730 24689755 chr2R 24689814 24689842 5 87 2.0 2.0 2.0 1.7 112 chr2R 24689730 intergenic not near genes chr2R 24689786 intergenic not near genes chr2R 24689842 intergenic not near genes chr2R_5_24685001 chr2R_24685001 RAL-318 622 chr2R 24727882 24727902 chr2R 24735390 24735408 mdg1 5 7507 2.0 3.5 2.8 1.3 7526 chr2R 24727882 intron Mid1 - chr2R 24731645 intron Mid1 - chr2R 24735408 intron Mid1 - chr2R_5_24730001 chr2R_24730001 RAL-318 623 chr2R 24763629 24763640 chr2R 24765604 24765613 G2 4 1974 4.0 9.0 6.5 0.5 1984 chr2R 24763629 exon CG3894 + chr2R 24764621 intron CG3894 + chr2R 24765613 exon CG3894 + chr2R_4_24760001 chr2R_24760001 RAL-318 624 chr2R 24859843 24859867 chr2R 24859929 24859952 7 84 1.0 1.5 1.2 3.2 109 chr2R 24859843 5` UTR CR44829 + chr2R 24859898 5` UTR CR44829 + chr2R 24859952 5` UTR CR44829 + chr2R_7_24855001 chr2R_24855001 RAL-318 625 chr2R 24897936 24897947 chr2R 24898010 24898024 4 78 2.0 4.0 3.0 1.0 88 chr2R 24897936 intron,3` UTR NaCP60E +,Tpc2 - chr2R 24897980 intron,3` UTR NaCP60E +,Tpc2 - chr2R 24898024 intron,3` UTR NaCP60E +,Tpc2 - chr2R_4_24895001 chr2R_24895001 RAL-318 626 chr2R 25004893 25004924 chr2R 25004971 25005002 9 76 1.0 2.5 1.8 3.2 109 chr2R 25004893 intron zip - chr2R 25004948 intron zip - chr2R 25005002 intron zip - chr2R_9_25000001 chr2R_25000001 RAL-318 627 chr2R 25014543 25014575 chr2R 25014619 25014651 12 74 2.0 5.0 3.5 2.7 108 chr2R 25014543 intron uzip + chr2R 25014597 intron uzip + chr2R 25014651 intron uzip + chr2R_12_25010001 chr2R_25010001 RAL-318 628 chr2R 25018346 25018376 chr2R 25018447 25018455 12 99 3.5 5.5 4.5 2.2 109 chr2R 25018346 intron uzip + chr2R 25018400 intron uzip + chr2R 25018455 intron uzip + chr2R_12_25015001 chr2R_25015001 RAL-318 629 chr2R 25061994 25062004 chr2R 25062073 25062083 6 78 5.5 1.5 3.5 1.3 89 chr2R 25061994 5` UTR gsb + chr2R 25062038 5` UTR gsb + chr2R 25062083 5` UTR gsb + chr2R_6_25060001 chr2R_25060001 RAL-318 630 chr2R 25076537 25076559 chr2R 25076683 25076707 6 147 2.5 1.5 2.0 2.0 170 chr2R 25076537 intron gol - chr2R 25076622 intron gol - chr2R 25076707 intron gol - chr2R_6_25075001 chr2R_25075001 RAL-318 631 chr2R 25081614 25081638 chr2R 25082701 25082717 5 1086 6.5 1.5 4.0 1.0 1103 chr2R 25081614 intron gol - chr2R 25082166 intron gol - chr2R 25082717 intron gol - chr2R_5_25080001 chr2R_25080001 RAL-318 632 chr2R 25101276 25101301 chr2R 25101378 25101385 5 98 3.0 2.0 2.5 1.4 109 chr2R 25101276 intron lov - chr2R 25101330 intron lov - chr2R 25101385 intron lov - chr2R_5_25100001 chr2R_25100001 RAL-318 633 chr2R 25122965 25122992 chr2R 25123044 25123069 4 77 0.5 2.0 1.2 1.8 104 chr2R 25122965 intron lov - chr2R 25123017 intron lov - chr2R 25123069 intron lov - chr2R_4_25120001 chr2R_25120001 RAL-318 634 chr2R 25141650 25141676 chr2R 25159339 25159364 roo 5 17689 1.0 2.5 1.8 1.8 17714 chr2R 25141650 intergenic not near genes chr2R 25150507 intergenic not near genes chr2R 25159364 intergenic not near genes chr2R_5_25150001 chr2R_25150001 RAL-318 635 chr2R 25181102 25181133 chr2R 25181199 25181230 4 97 1.0 1.5 1.2 1.8 128 chr2R 25181102 intergenic not near genes chr2R 25181166 intergenic not near genes chr2R 25181230 intergenic not near genes chr2R_4_25180001 chr2R_25180001 RAL-318 636 chr2R 25253442 25253466 chr2R 25253518 25253525 4 72 3.5 3.5 3.5 0.9 83 chr2R 25253442 intron,intron CG9380 -,CG30428 + chr2R 25253484 intron,intron CG9380 -,CG30428 + chr2R 25253525 intron,intron CG9380 -,CG30428 + chr2R_4_25250001 chr2R_25250001 RAL-318 637 chr3L 34311 34342 chr3L 34599 34620 8 286 3.5 3.0 3.2 1.9 309 chr3L 34311 intergenic not near genes chr3L 34466 intergenic not near genes chr3L 34620 intergenic not near genes chr3L_8_30001 chr3L_30001 RAL-318 638 chr3L 58945 58960 chr3L 59026 59041 6 84 3.5 1.5 2.5 1.7 96 chr3L 58945 intergenic not near genes chr3L 58993 intergenic not near genes chr3L 59041 intergenic not near genes chr3L_6_55001 chr3L_55001 RAL-318 639 chr3L 75642 75666 chr3L 75728 75754 6 88 1.5 2.0 1.8 2.1 112 chr3L 75642 intergenic CG13405 - chr3L 75698 intergenic CG13405 - chr3L 75754 intergenic CG13405 - chr3L_6_75001 chr3L_75001 RAL-318 640 chr3L 110209 110230 chr3L 119376 119396 roo 7 9166 5.0 2.5 3.8 1.5 9187 chr3L 110209 intergenic not near genes chr3L 114802 intergenic not near genes chr3L 119396 intergenic not near genes chr3L_7_110001 chr3L_110001 RAL-318 641 chr3L 351987 352016 chr3L 352063 352095 9 78 4.5 3.0 3.8 1.9 108 chr3L 351987 intron Ptpmeg + chr3L 352041 intron Ptpmeg + chr3L 352095 intron Ptpmeg + chr3L_9_350001 chr3L_350001 RAL-318 642 chr3L 534796 534806 chr3L 535052 535062 4 255 2.0 6.0 4.0 0.8 266 chr3L 534796 intron klar - chr3L 534929 intron klar - chr3L 535062 intron klar - chr3L_4_530001 chr3L_530001 RAL-318 643 chr3L 563973 563998 chr3L 564152 564177 13 179 4.5 6.5 5.5 2.0 204 chr3L 563973 intron hipk + chr3L 564075 intron hipk + chr3L 564177 intron hipk + chr3L_13_560001 chr3L_560001 RAL-318 644 chr3L 642472 642498 chr3L 642563 642589 6 90 2.5 4.0 3.2 1.4 117 chr3L 642472 5` UTR CR43334 + chr3L 642530 5` UTR CR43334 + chr3L 642589 5` UTR CR43334 + chr3L_6_640001 chr3L_640001 RAL-318 645 chr3L 732831 732845 chr3L 733049 733067 4 218 4.0 3.0 3.5 0.9 236 chr3L 732831 intergenic not near genes chr3L 732949 intergenic not near genes chr3L 733067 intergenic not near genes chr3L_4_730001 chr3L_730001 RAL-318 646 chr3L 812861 812876 chr3L 812940 812957 5 79 5.5 6.0 5.8 0.7 96 chr3L 812861 intergenic CR44537 + chr3L 812909 intergenic CR44537 + chr3L 812957 intergenic CR44537 + chr3L_5_810001 chr3L_810001 RAL-318 647 chr3L 854182 854200 chr3L 854260 854278 6 78 1.5 2.0 1.8 2.1 96 chr3L 854182 intron dpr20 - chr3L 854230 intron dpr20 - chr3L 854278 intron dpr20 - chr3L_6_850001 chr3L_850001 RAL-318 648 chr3L 875659 875693 chr3L 875744 875780 10 86 2.5 3.5 3.0 2.5 121 chr3L 875659 intron CG32479 + chr3L 875720 intron CG32479 + chr3L 875780 intron CG32479 + chr3L_10_875001 chr3L_875001 RAL-318 649 chr3L 925182 925200 chr3L 932608 932626 mdg1 6 7426 5.0 3.5 4.2 1.2 7444 chr3L 925182 intron Glut1 + chr3L 928904 intron Glut1 + chr3L 932626 intron Glut1 + chr3L_6_925001 chr3L_925001 RAL-318 650 chr3L 933873 933910 chr3L 933999 934035 12 124 2.0 3.0 2.5 3.4 162 chr3L 933873 intron Glut1 + chr3L 933954 intron Glut1 + chr3L 934035 intron Glut1 + chr3L_12_930001 chr3L_930001 RAL-318 651 chr3L 939776 939796 chr3L 940896 940917 jockey 6 1120 4.5 3.5 4.0 1.2 1141 chr3L 939776 intron Glut1 + chr3L 940346 intron Glut1 + chr3L 940917 intron Glut1 + chr3L_6_940001 chr3L_940001 RAL-318 652 chr3L 949893 949925 chr3L 949978 950010 11 83 1.0 2.0 1.5 4.4 117 chr3L 949893 intron Glut1 + chr3L 949952 intron Glut1 + chr3L 950010 intron Glut1 + chr3L_11_945001 chr3L_945001 RAL-318 653 chr3L 1008506 1008530 chr3L 1008582 1008606 5 76 1.5 2.0 1.8 1.8 100 chr3L 1008506 intron trio - chr3L 1008556 intron trio - chr3L 1008606 intron trio - chr3L_5_1005001 chr3L_1005001 RAL-318 654 chr3L 1021377 1021380 chr3L 1021457 1021459 4 79 8.5 4.0 6.2 0.6 82 chr3L 1021377 intron trio - chr3L 1021418 intron trio - chr3L 1021459 intron trio - chr3L_4_1020001 chr3L_1020001 RAL-318 655 chr3L 1021381 1021408 chr3L 1021455 1021488 9 79 1.5 4.0 2.8 2.4 107 chr3L 1021381 intron trio - chr3L 1021434 intron trio - chr3L 1021488 intron trio - chr3L_9_1020001 chr3L_1020001 RAL-318 656 chr3L 1047355 1047384 chr3L 1055162 1055172 412 5 7798 3.5 2.5 3.0 1.2 7817 chr3L 1047355 intron bab1 - chr3L 1051264 intron bab1 - chr3L 1055172 intron bab1 - chr3L_5_1050001 chr3L_1050001 RAL-318 657 chr3L 1077761 1077789 chr3L 1078036 1078065 6 276 1.0 1.5 1.2 2.7 304 chr3L 1077761 intron bab1 - chr3L 1077913 intron bab1 - chr3L 1078065 intron bab1 - chr3L_6_1075001 chr3L_1075001 RAL-318 658 chr3L 1109637 1109666 chr3L 1109725 1109754 8 88 2.0 2.5 2.2 2.5 117 chr3L 1109637 intergenic not near genes chr3L 1109696 intergenic not near genes chr3L 1109754 intergenic not near genes chr3L_8_1105001 chr3L_1105001 RAL-318 659 chr3L 1145240 1145258 chr3L 1145319 1145337 5 79 4.0 0.0 2.0 1.7 97 chr3L 1145240 intron bab2 - chr3L 1145288 intron bab2 - chr3L 1145337 intron bab2 - chr3L_5_1145001 chr3L_1145001 RAL-318 660 chr3L 1154128 1154162 chr3L 1163278 1163311 roo 11 9148 2.5 2.0 2.2 3.4 9183 chr3L 1154128 intron bab2 - chr3L 1158720 intron bab2 - chr3L 1163311 intron bab2 - chr3L_11_1155001 chr3L_1155001 RAL-318 661 chr3L 1219594 1219624 chr3L 1227327 1227356 412 10 7731 1.5 2.5 2.0 3.3 7762 chr3L 1219594 intron mwh + chr3L 1223475 intron mwh + chr3L 1227356 intron mwh + chr3L_10_1220001 chr3L_1220001 RAL-318 662 chr3L 1257635 1257649 chr3L 1257715 1257729 4 80 0.5 0.5 0.5 2.7 94 chr3L 1257635 intron CG9134 + chr3L 1257682 intron CG9134 + chr3L 1257729 intron CG9134 + chr3L_4_1255001 chr3L_1255001 RAL-318 663 chr3L 1310982 1311014 chr3L 1315842 1315874 15 4864 37.0 44.0 40.5 0.4 4892 chr3L 1310982 exon CG2469 + chr3L 1313428 intergenic CG9186 -,CG9153 + chr3L 1315874 exon CG9153 + chr3L_15_1310001 chr3L_1310001 RAL-318 664 chr3L 1324625 1324655 chr3L 1324703 1324733 4 78 3.0 2.5 2.8 1.1 108 chr3L 1324625 intron Myo61F + chr3L 1324679 intron Myo61F + chr3L 1324733 intron Myo61F + chr3L_4_1320001 chr3L_1320001 RAL-318 665 chr3L 1380108 1380128 chr3L 1380208 1380228 5 100 1.0 0.5 0.8 2.8 120 chr3L 1380108 intron,intron Ptp61F -,ru + chr3L 1380168 intron,intron Ptp61F -,ru + chr3L 1380228 intron,intron Ptp61F -,ru + chr3L_5_1380001 chr3L_1380001 RAL-318 666 chr3L 1396738 1396756 chr3L 1396822 1396840 7 83 5.5 5.0 5.2 1.1 102 chr3L 1396738 intron Ptp61F - chr3L 1396789 intron Ptp61F - chr3L 1396840 intron Ptp61F - chr3L_7_1395001 chr3L_1395001 RAL-318 667 chr3L 1415783 1415800 chr3L 1415856 1415879 11 76 0.5 3.5 2.0 3.7 96 chr3L 1415783 intron Ptp61F - chr3L 1415831 intron Ptp61F - chr3L 1415879 intron Ptp61F - chr3L_11_1415001 chr3L_1415001 RAL-318 668 chr3L 1528238 1528256 chr3L 1528302 1528306 4 62 6.0 3.0 4.5 0.7 68 chr3L 1528238 intron CG12090 - chr3L 1528272 intron CG12090 - chr3L 1528306 intron CG12090 - chr3L_4_1525001 chr3L_1525001 RAL-318 669 chr3L 1688247 1688269 chr3L 1688376 1688398 4 129 1.5 0.0 0.8 2.2 151 chr3L 1688247 intron CG7991 + chr3L 1688322 intron CG7991 + chr3L 1688398 intron CG7991 + chr3L_4_1685001 chr3L_1685001 RAL-318 670 chr3L 1754690 1754721 chr3L 1754809 1754839 9 119 2.0 3.5 2.8 2.4 149 chr3L 1754690 intron Cht2 - chr3L 1754764 intron Cht2 - chr3L 1754839 intron Cht2 - chr3L_9_1750001 chr3L_1750001 RAL-318 671 chr3L 1925074 1925109 chr3L 1925161 1925196 20 86 1.0 1.5 1.2 9.1 122 chr3L 1925074 intron Dbx + chr3L 1925135 intron Dbx + chr3L 1925196 intron Dbx + chr3L_20_1925001 chr3L_1925001 RAL-318 672 chr3L 1930879 1930903 chr3L 1931008 1931032 7 126 4.0 4.5 4.2 1.3 153 chr3L 1930879 intron Dbx + chr3L 1930956 intron Dbx + chr3L 1931032 intron Dbx + chr3L_7_1930001 chr3L_1930001 RAL-318 673 chr3L 2034049 2034057 chr3L 2034149 2034155 5 99 1.5 2.5 2.0 1.7 106 chr3L 2034049 intergenic not near genes chr3L 2034102 intergenic not near genes chr3L 2034155 intergenic not near genes chr3L_5_2030001 chr3L_2030001 RAL-318 674 chr3L 2168770 2168808 chr3L 2168861 2168899 10 90 2.0 2.5 2.2 3.1 129 chr3L 2168770 exon CG15879 - chr3L 2168834 intron CG15879 - chr3L 2168899 intron CG15879 - chr3L_10_2165001 chr3L_2165001 RAL-318 675 chr3L 2308005 2308035 chr3L 2308111 2308141 9 103 1.5 4.0 2.8 2.4 136 chr3L 2308005 intergenic not near genes chr3L 2308073 intergenic not near genes chr3L 2308141 intergenic not near genes chr3L_9_2305001 chr3L_2305001 RAL-318 676 chr3L 2421500 2421534 chr3L 2421576 2421602 7 68 5.5 2.5 4.0 1.4 102 chr3L 2421500 intron CG45186 + chr3L 2421551 intron CG45186 + chr3L 2421602 intron CG45186 + chr3L_7_2420001 chr3L_2420001 RAL-318 677 chr3L 2515399 2515408 chr3L 2515480 2515490 4 82 3.5 1.0 2.2 1.2 91 chr3L 2515399 intron Spn - chr3L 2515444 intron Spn - chr3L 2515490 intron Spn - chr3L_4_2515001 chr3L_2515001 RAL-318 678 chr3L 2517777 2517803 chr3L 2517914 2517939 15 136 1.5 4.5 3.0 3.8 162 chr3L 2517777 intron,5` UTR Spn -,CR45170 + chr3L 2517858 intron,5` UTR Spn -,CR45170 + chr3L 2517939 intron,5` UTR Spn -,CR45170 + chr3L_15_2515001 chr3L_2515001 RAL-318 679 chr3L 2561530 2561555 chr3L 2561607 2561632 7 77 1.0 2.0 1.5 2.8 102 chr3L 2561530 intron msn - chr3L 2561581 intron msn - chr3L 2561632 intron msn - chr3L_7_2560001 chr3L_2560001 RAL-318 680 chr3L 2591724 2591737 chr3L 2591810 2591824 4 87 0.5 0.5 0.5 2.7 100 chr3L 2591724 intron dos + chr3L 2591774 intron dos + chr3L 2591824 intron dos + chr3L_4_2590001 chr3L_2590001 RAL-318 681 chr3L 2683948 2683974 chr3L 2684023 2684050 7 73 1.5 0.5 1.0 3.5 102 chr3L 2683948 intron Fife - chr3L 2683999 intron Fife - chr3L 2684050 intron Fife - chr3L_7_2680001 chr3L_2680001 RAL-318 682 chr3L 2812760 2812769 chr3L 2813097 2813110 5 340 2.0 5.0 3.5 1.1 350 chr3L 2812760 intron CG43444 - chr3L 2812935 intron CG43444 - chr3L 2813110 intron CG43444 - chr3L_5_2810001 chr3L_2810001 RAL-318 683 chr3L 2854614 2854636 chr3L 2854678 2854713 10 72 3.5 2.5 3.0 2.5 99 chr3L 2854614 intron CG43444 - chr3L 2854664 intron CG43444 - chr3L 2854713 intron CG43444 - chr3L_10_2850001 chr3L_2850001 RAL-318 684 chr3L 2927837 2927866 chr3L 2936114 2936137 Tirant 9 8276 4.0 0.5 2.2 2.8 8300 chr3L 2927837 intron Shab + chr3L 2931987 intron Shab + chr3L 2936137 intron Shab + chr3L_9_2930001 chr3L_2930001 RAL-318 685 chr3L 3051746 3051756 chr3L 3051986 3051996 pogo 4 240 4.5 0.5 2.5 1.1 250 chr3L 3051746 3` UTR CG32485 + chr3L 3051871 intergenic CG32485 + chr3L 3051996 intergenic CG32485 + chr3L_4_3050001 chr3L_3050001 RAL-318 686 chr3L 3061295 3061314 chr3L 3069876 3069892 Tirant 4 8581 3.5 3.5 3.5 0.9 8597 chr3L 3061295 intron CG32486 - chr3L 3065594 intron CG32486 - chr3L 3069892 intron CG32486 - chr3L_4_3065001 chr3L_3065001 RAL-318 687 chr3L 3165350 3165379 chr3L 3165433 3165461 8 83 1.5 1.0 1.2 3.6 111 chr3L 3165350 intron,intron Asciz -,CG32280 + chr3L 3165406 intron,intron Asciz -,CG32280 + chr3L 3165461 intron,intron Asciz -,CG32280 + chr3L_8_3165001 chr3L_3165001 RAL-318 688 chr3L 3254080 3254116 chr3L 3254170 3254206 6 90 1.5 4.0 2.8 1.6 126 chr3L 3254080 5` UTR CR43626 + chr3L 3254143 5` UTR CR43626 + chr3L 3254206 5` UTR CR43626 + chr3L_6_3250001 chr3L_3250001 RAL-318 689 chr3L 3259630 3259641 chr3L 3259725 3259734 4 92 4.5 4.5 4.5 0.7 104 chr3L 3259630 intron ckd + chr3L 3259682 intron ckd + chr3L 3259734 intron ckd + chr3L_4_3255001 chr3L_3255001 RAL-318 690 chr3L 3259642 3259820 chr3L 3259717 3259919 5 91 1.0 4.0 2.5 1.4 277 chr3L 3259642 intron ckd + chr3L 3259780 intron ckd + chr3L 3259919 intron ckd + chr3L_5_3255001 chr3L_3255001 RAL-318 691 chr3L 3281447 3281473 chr3L 3281933 3281967 Doc 9 490 4.0 6.0 5.0 1.5 520 chr3L 3281447 intron CG12017 + chr3L 3281707 intron CG12017 + chr3L 3281967 intron CG12017 + chr3L_9_3280001 chr3L_3280001 RAL-318 692 chr3L 3310297 3310325 chr3L 3310375 3310404 4 79 2.5 1.5 2.0 1.3 107 chr3L 3310297 intron ZnT63C + chr3L 3310350 intron ZnT63C + chr3L 3310404 intron ZnT63C + chr3L_4_3310001 chr3L_3310001 RAL-318 693 chr3L 3436289 3436316 chr3L 3436368 3436390 4 76 1.0 2.0 1.5 1.6 101 chr3L 3436289 intron eIF5B - chr3L 3436340 intron eIF5B - chr3L 3436390 intron eIF5B - chr3L_4_3435001 chr3L_3435001 RAL-318 694 chr3L 3475075 3475108 chr3L 3475518 3475552 jockey 14 443 2.0 4.5 3.2 3.3 477 chr3L 3475075 intron CG42324 + chr3L 3475314 intron CG42324 + chr3L 3475552 intron CG42324 + chr3L_14_3475001 chr3L_3475001 RAL-318 695 chr3L 3512959 3512980 chr3L 3513039 3513040 4 75 3.5 1.0 2.2 1.2 81 chr3L 3512959 intergenic ImpE2 - chr3L 3513000 intergenic ImpE2 - chr3L 3513040 intergenic ImpE2 - chr3L_4_3510001 chr3L_3510001 RAL-318 696 chr3L 3601299 3601330 chr3L 3606610 3606640 copia 13 5311 4.5 4.0 4.2 2.5 5341 chr3L 3601299 intron Eip63E + chr3L 3603970 intron Eip63E + chr3L 3606640 intron Eip63E + chr3L_13_3600001 chr3L_3600001 RAL-318 697 chr3L 3763758 3763762 chr3L 3763839 3763843 4 81 3.0 0.0 1.5 1.6 85 chr3L 3763758 intron CG32264 - chr3L 3763800 intron CG32264 - chr3L 3763843 intron CG32264 - chr3L_4_3760001 chr3L_3760001 RAL-318 698 chr3L 3787072 3787090 chr3L 3787149 3787167 4 77 0.0 1.0 0.5 2.7 95 chr3L 3787072 intron CG32264 - chr3L 3787120 intron CG32264 - chr3L 3787167 intron CG32264 - chr3L_4_3785001 chr3L_3785001 RAL-318 699 chr3L 3853622 3853638 chr3L 3853695 3853730 7 88 4.0 4.5 4.2 1.3 108 chr3L 3853622 intron Awh + chr3L 3853676 intron Awh + chr3L 3853730 intron Awh + chr3L_7_3850001 chr3L_3850001 RAL-318 700 chr3L 3875640 3875675 chr3L 3875724 3875759 11 83 3.5 2.5 3.0 2.8 119 chr3L 3875640 intergenic not near genes chr3L 3875700 intergenic not near genes chr3L 3875759 intergenic not near genes chr3L_11_3875001 chr3L_3875001 RAL-318 701 chr3L 3915960 3915978 chr3L 3916088 3916106 8 128 0.5 9.0 4.8 1.4 146 chr3L 3915960 intron Eip63F-1 - chr3L 3916033 intron Eip63F-1 - chr3L 3916106 intron Eip63F-1 - chr3L_8_3915001 chr3L_3915001 RAL-318 702 chr3L 3960213 3960228 chr3L 3960464 3960480 8 252 3.0 3.0 3.0 2.0 267 chr3L 3960213 intron CG12605 - chr3L 3960346 intron CG12605 - chr3L 3960480 intron CG12605 - chr3L_8_3960001 chr3L_3960001 RAL-318 703 chr3L 4015733 4015767 chr3L 4015816 4015850 11 81 3.0 0.0 1.5 4.4 117 chr3L 4015733 intergenic not near genes chr3L 4015792 intergenic not near genes chr3L 4015850 intergenic not near genes chr3L_11_4015001 chr3L_4015001 RAL-318 704 chr3L 4048419 4048449 chr3L 4048511 4048541 6 92 2.0 2.5 2.2 1.9 122 chr3L 4048419 intron CG1136 + chr3L 4048480 intron CG1136 + chr3L 4048541 intron CG1136 + chr3L_6_4045001 chr3L_4045001 RAL-318 705 chr3L 4061909 4061942 chr3L 4061987 4062020 5 77 0.5 1.0 0.8 2.8 111 chr3L 4061909 3` UTR CG18869 + chr3L 4061964 intergenic CG18869 +,dib + chr3L 4062020 intergenic CG18869 +,dib + chr3L_5_4060001 chr3L_4060001 RAL-318 706 chr3L 4170088 4170113 chr3L 4170257 4170282 5 169 0.5 2.0 1.2 2.3 194 chr3L 4170088 intergenic Ero1L + chr3L 4170185 intergenic Ero1L + chr3L 4170282 intergenic Ero1L + chr3L_5_4170001 chr3L_4170001 RAL-318 707 chr3L 4187329 4187358 chr3L 4187492 4187494 10 159 1.0 2.0 1.5 4.0 165 chr3L 4187329 intron,intron CG18675 +,Teh2 - chr3L 4187412 intron,intron CG18675 +,Teh2 - chr3L 4187494 intron,intron CG18675 +,Teh2 - chr3L_10_4185001 chr3L_4185001 RAL-318 708 chr3L 4519424 4519453 chr3L 4519501 4519530 13 76 2.5 1.0 1.8 4.6 106 chr3L 4519424 intron Tie - chr3L 4519477 intron Tie - chr3L 4519530 intron Tie - chr3L_13_4515001 chr3L_4515001 RAL-318 709 chr3L 4685558 4685590 chr3L 4685932 4685964 5 374 0.0 0.5 0.2 4.2 406 chr3L 4685558 intron axo - chr3L 4685761 intron axo - chr3L 4685964 intron axo - chr3L_5_4685001 chr3L_4685001 RAL-318 710 chr3L 4725325 4725356 chr3L 4725413 4725444 9 88 2.0 4.5 3.2 2.1 119 chr3L 4725325 intron RhoGEF64C + chr3L 4725384 intron RhoGEF64C + chr3L 4725444 intron RhoGEF64C + chr3L_9_4725001 chr3L_4725001 RAL-318 711 chr3L 4748710 4748724 chr3L 4748800 4748812 4 90 4.0 5.0 4.5 0.7 102 chr3L 4748710 intron RhoGEF64C + chr3L 4748761 intron RhoGEF64C + chr3L 4748812 intron RhoGEF64C + chr3L_4_4745001 chr3L_4745001 RAL-318 712 chr3L 4858306 4858337 chr3L 4858394 4858412 8 87 3.5 5.0 4.2 1.5 106 chr3L 4858306 intergenic not near genes chr3L 4858359 intergenic not near genes chr3L 4858412 intergenic not near genes chr3L_8_4855001 chr3L_4855001 RAL-318 713 chr3L 4926091 4926123 chr3L 4926170 4926202 11 78 3.5 3.0 3.2 2.6 111 chr3L 4926091 intergenic not near genes chr3L 4926146 intergenic not near genes chr3L 4926202 intergenic not near genes chr3L_11_4925001 chr3L_4925001 RAL-318 714 chr3L 5077665 5077679 chr3L 5077747 5077762 6 82 2.5 2.0 2.2 1.9 97 chr3L 5077665 intron Con - chr3L 5077714 intron Con - chr3L 5077762 intron Con - chr3L_6_5075001 chr3L_5075001 RAL-318 715 chr3L 5339829 5339846 chr3L 5340073 5340090 5 244 3.5 1.5 2.5 1.4 261 chr3L 5339829 intergenic not near genes chr3L 5339960 intergenic not near genes chr3L 5340090 intergenic not near genes chr3L_5_5335001 chr3L_5335001 RAL-318 716 chr3L 5384320 5384348 chr3L 5384390 5384428 6 76 1.0 9.0 5.0 1.0 108 chr3L 5384320 intergenic not near genes chr3L 5384374 intergenic not near genes chr3L 5384428 intergenic not near genes chr3L_6_5380001 chr3L_5380001 RAL-318 717 chr3L 5388210 5388232 chr3L 5388534 5388556 8 324 4.0 7.0 5.5 1.2 346 chr3L 5388210 intergenic not near genes chr3L 5388383 intergenic not near genes chr3L 5388556 intergenic not near genes chr3L_8_5385001 chr3L_5385001 RAL-318 718 chr3L 5482941 5482978 chr3L 5483150 5483163 6 198 3.0 18.5 10.8 0.5 222 chr3L 5482941 exon CG4835 + chr3L 5483052 exon CG4835 + chr3L 5483163 exon CG4835 + chr3L_6_5480001 chr3L_5480001 RAL-318 719 chr3L 5549445 5549468 chr3L 5549522 5549535 14 72 4.5 3.0 3.8 2.9 90 chr3L 5549445 intron CG10625 - chr3L 5549490 intron CG10625 - chr3L 5549535 intron CG10625 - chr3L_14_5545001 chr3L_5545001 RAL-318 720 chr3L 5624293 5624324 chr3L 5624370 5624396 8 73 5.5 3.0 4.2 1.5 103 chr3L 5624293 intergenic not near genes chr3L 5624344 intergenic not near genes chr3L 5624396 intergenic not near genes chr3L_8_5620001 chr3L_5620001 RAL-318 721 chr3L 5910048 5910059 chr3L 5910279 5910299 pogo 4 238 2.0 3.0 2.5 1.1 251 chr3L 5910048 intron CG13288 + chr3L 5910174 intron CG13288 + chr3L 5910299 intron CG13288 + chr3L_4_5910001 chr3L_5910001 RAL-318 722 chr3L 5926334 5926347 chr3L 5926505 5926508 BS 4 178 4.0 4.5 4.2 0.8 174 chr3L 5926334 intron Vap-33B + chr3L 5926421 intron Vap-33B + chr3L 5926508 intron Vap-33B + chr3L_4_5925001 chr3L_5925001 RAL-318 723 chr3L 5987039 5987049 chr3L 5987120 5987130 4 81 1.0 1.5 1.2 1.8 91 chr3L 5987039 intergenic not near genes chr3L 5987084 intergenic not near genes chr3L 5987130 intergenic not near genes chr3L_4_5985001 chr3L_5985001 RAL-318 724 chr3L 6001679 6001715 chr3L 6004379 6004415 jockey 7 2698 5.0 1.5 3.2 1.7 2736 chr3L 6001679 intron PVRAP + chr3L 6003047 intron PVRAP + chr3L 6004415 intron PVRAP + chr3L_7_6000001 chr3L_6000001 RAL-318 725 chr3L 6033604 6033633 chr3L 6033751 6033754 12 144 3.5 3.0 3.2 2.9 150 chr3L 6033604 3` UTR CG10477 - chr3L 6033679 3` UTR CG10477 - chr3L 6033754 exon CG10477 - chr3L_12_6030001 chr3L_6030001 RAL-318 726 chr3L 6162362 6162385 chr3L 6162436 6162460 9 76 0.0 2.0 1.0 4.5 98 chr3L 6162362 intergenic CR45744 - chr3L 6162411 intergenic CR45744 - chr3L 6162460 intergenic CR45744 - chr3L_9_6160001 chr3L_6160001 RAL-318 727 chr3L 6185613 6185628 chr3L 6185691 6185706 5 78 2.0 4.0 3.0 1.2 93 chr3L 6185613 exon CG43293 + chr3L 6185660 intron CG43293 + chr3L 6185706 exon CG43293 + chr3L_5_6185001 chr3L_6185001 RAL-318 728 chr3L 6220913 6220940 chr3L 6230065 6230087 roo 6 9148 4.5 4.5 4.5 1.1 9174 chr3L 6220913 5` UTR pncr008:3L + chr3L 6225500 intergenic not near genes chr3L 6230087 intergenic not near genes chr3L_6_6225001 chr3L_6225001 RAL-318 729 chr3L 6276865 6276874 chr3L 6276945 6276956 5 81 4.0 3.5 3.8 1.0 91 chr3L 6276865 3` UTR CG43168 + chr3L 6276910 3` UTR CG43168 + chr3L 6276956 3` UTR CG43168 + chr3L_5_6275001 chr3L_6275001 RAL-318 730 chr3L 6284952 6284979 chr3L 6285045 6285073 10 94 3.0 5.0 4.0 2.0 121 chr3L 6284952 intergenic not near genes chr3L 6285012 intergenic not near genes chr3L 6285073 intergenic not near genes chr3L_10_6285001 chr3L_6285001 RAL-318 731 chr3L 6335010 6335020 chr3L 6335481 6335491 297 4 471 6.0 4.0 5.0 0.7 481 chr3L 6335010 intron CG13300 - chr3L 6335250 intron CG13300 - chr3L 6335491 intron CG13300 - chr3L_4_6335001 chr3L_6335001 RAL-318 732 chr3L 6613163 6613198 chr3L 6613243 6613249 7 75 0.5 1.0 0.8 3.9 86 chr3L 6613163 intron CG8398 + chr3L 6613206 intron CG8398 + chr3L 6613249 intron CG8398 + chr3L_7_6610001 chr3L_6610001 RAL-318 733 chr3L 6855932 6855956 chr3L 6860716 6860740 Doc 7 4784 2.0 6.0 4.0 1.4 4808 chr3L 6855932 intergenic not near genes chr3L 6858336 intergenic not near genes chr3L 6860740 intergenic not near genes chr3L_7_6855001 chr3L_6855001 RAL-318 734 chr3L 6900894 6900899 chr3L 6900970 6900975 4 76 0.0 3.5 1.8 1.4 81 chr3L 6900894 intergenic not near genes chr3L 6900934 intergenic not near genes chr3L 6900975 intergenic not near genes chr3L_4_6900001 chr3L_6900001 RAL-318 735 chr3L 6934338 6934359 chr3L 6934449 6934469 9 111 2.5 1.0 1.8 3.2 131 chr3L 6934338 exon CG14820 + chr3L 6934404 intron CG14820 + chr3L 6934469 intron CG14820 + chr3L_9_6930001 chr3L_6930001 RAL-318 736 chr3L 7033174 7033205 chr3L 7033254 7033285 10 80 5.0 4.5 4.8 1.7 111 chr3L 7033174 intron Mp + chr3L 7033230 intron Mp + chr3L 7033285 intron Mp + chr3L_10_7030001 chr3L_7030001 RAL-318 737 chr3L 7091535 7091556 chr3L 7091605 7091631 7 74 4.0 1.0 2.5 2.0 96 chr3L 7091535 intergenic not near genes chr3L 7091583 intergenic not near genes chr3L 7091631 intergenic not near genes chr3L_7_7090001 chr3L_7090001 RAL-318 738 chr3L 7150884 7150902 chr3L 7150960 7150978 5 76 1.5 4.0 2.8 1.3 94 chr3L 7150884 intron corn - chr3L 7150931 intron corn - chr3L 7150978 intron corn - chr3L_5_7150001 chr3L_7150001 RAL-318 739 chr3L 7175043 7175059 chr3L 7175273 7175287 5 229 4.5 5.5 5.0 0.8 244 chr3L 7175043 intron Dscam2 - chr3L 7175165 intron Dscam2 - chr3L 7175287 intron Dscam2 - chr3L_5_7175001 chr3L_7175001 RAL-318 740 chr3L 7218088 7218121 chr3L 7218165 7218199 10 77 1.5 3.5 2.5 2.9 111 chr3L 7218088 intergenic not near genes chr3L 7218144 intergenic not near genes chr3L 7218199 intergenic not near genes chr3L_10_7215001 chr3L_7215001 RAL-318 741 chr3L 7285458 7285476 chr3L 7285536 7285554 8 77 1.0 2.0 1.5 3.2 96 chr3L 7285458 intron unc-13-4A - chr3L 7285506 intron unc-13-4A - chr3L 7285554 intron unc-13-4A - chr3L_8_7285001 chr3L_7285001 RAL-318 742 chr3L 7377331 7377349 chr3L 7380421 7380454 297 7 3101 0.5 2.5 1.5 2.8 3123 chr3L 7377331 intron SMSr - chr3L 7378892 intron SMSr - chr3L 7380454 intron SMSr - chr3L_7_7375001 chr3L_7375001 RAL-318 743 chr3L 7433019 7433029 chr3L 7433165 7433196 8 155 17.5 12.5 15.0 0.5 177 chr3L 7433019 intron CG42458 + chr3L 7433108 intron CG42458 + chr3L 7433196 intron CG42458 + chr3L_8_7430001 chr3L_7430001 RAL-318 744 chr3L 7450687 7450700 chr3L 7450770 7450783 8 82 4.5 0.5 2.5 2.3 96 chr3L 7450687 intron CG42458 + chr3L 7450735 intron CG42458 + chr3L 7450783 intron CG42458 + chr3L_8_7450001 chr3L_7450001 RAL-318 745 chr3L 7498764 7498789 chr3L 7503541 7503549 F-element 5 4774 2.0 1.5 1.8 1.8 4785 chr3L 7498764 5` UTR CG8539 - chr3L 7501156 intergenic not near genes chr3L 7503549 intergenic not near genes chr3L_5_7500001 chr3L_7500001 RAL-318 746 chr3L 7527531 7527567 chr3L 7527615 7527639 7 75 0.0 0.5 0.2 5.8 108 chr3L 7527531 3` UTR ltl + chr3L 7527585 3` UTR ltl + chr3L 7527639 3` UTR ltl + chr3L_7_7525001 chr3L_7525001 RAL-318 747 chr3L 7568947 7568980 chr3L 7569026 7569059 5 78 2.0 3.0 2.5 1.4 112 chr3L 7568947 exon frac + chr3L 7569003 intron frac + chr3L 7569059 intron frac + chr3L_5_7565001 chr3L_7565001 RAL-318 748 chr3L 7575285 7575298 chr3L 7575370 7575383 4 84 4.5 2.0 3.2 1.0 98 chr3L 7575285 intergenic not near genes chr3L 7575334 intergenic not near genes chr3L 7575383 intergenic not near genes chr3L_4_7575001 chr3L_7575001 RAL-318 749 chr3L 7576235 7576245 chr3L 7576299 7576325 4 75 1.5 2.0 1.8 1.4 90 chr3L 7576235 intergenic not near genes chr3L 7576280 intergenic not near genes chr3L 7576325 intergenic not near genes chr3L_4_7575001 chr3L_7575001 RAL-318 750 chr3L 7691839 7691860 chr3L 7691931 7691952 5 91 5.5 3.0 4.2 1.0 113 chr3L 7691839 intron,intron,intron CG32373 +,Ank2 -,CG44195 - chr3L 7691896 intron,intron,intron CG32373 +,Ank2 -,CG44195 - chr3L 7691952 intron,intron,intron CG32373 +,Ank2 -,CG44195 - chr3L_5_7690001 chr3L_7690001 RAL-318 751 chr3L 7752154 7752178 chr3L 7752257 7752285 9 106 3.0 2.0 2.5 2.6 131 chr3L 7752154 intron CG32373 + chr3L 7752220 intron CG32373 + chr3L 7752285 intron CG32373 + chr3L_9_7750001 chr3L_7750001 RAL-318 752 chr3L 7793712 7793745 chr3L 7800764 7800766 297 6 7047 1.0 4.0 2.5 1.7 7054 chr3L 7793712 intron CG32369 - chr3L 7797239 intron CG32369 - chr3L 7800766 intron CG32369 - chr3L_6_7795001 chr3L_7795001 RAL-318 753 chr3L 7886528 7886536 chr3L 7889046 7889053 Stalker4 7 2518 1.0 3.0 2.0 2.3 2525 chr3L 7886528 intron CG32365 + chr3L 7887790 intron CG32365 + chr3L 7889053 intron CG32365 + chr3L_7_7885001 chr3L_7885001 RAL-318 754 chr3L 7971862 7971876 chr3L 7971942 7971955 4 79 2.5 6.5 4.5 0.7 93 chr3L 7971862 3` UTR RNaseX25 + chr3L 7971908 3` UTR RNaseX25 + chr3L 7971955 3` UTR RNaseX25 + chr3L_4_7970001 chr3L_7970001 RAL-318 755 chr3L 7985362 7985397 chr3L 7987689 7987725 NOF 10 2328 3.0 1.5 2.2 3.1 2363 chr3L 7985362 intron nmo + chr3L 7986544 intron nmo + chr3L 7987725 intron nmo + chr3L_10_7985001 chr3L_7985001 RAL-318 756 chr3L 8295790 8295821 chr3L 8295948 8295977 6 158 5.0 4.5 4.8 1.0 187 chr3L 8295790 intergenic CG7201 - chr3L 8295884 intergenic not near genes chr3L 8295977 intergenic not near genes chr3L_6_8295001 chr3L_8295001 RAL-318 757 chr3L 8414114 8414128 chr3L 8414196 8414210 4 82 0.5 5.0 2.8 1.1 96 chr3L 8414114 intron Exo70 + chr3L 8414162 intron Exo70 + chr3L 8414210 intron Exo70 + chr3L_4_8410001 chr3L_8410001 RAL-318 758 chr3L 8498299 8498326 chr3L 8505766 8505793 blood 4 7467 9.5 2.5 6.0 0.6 7494 chr3L 8498299 intron CG43163 - chr3L 8502046 intron CG43163 - chr3L 8505793 intron CG43163 - chr3L_4_8500001 chr3L_8500001 RAL-318 759 chr3L 8551743 8551772 chr3L 8551825 8551849 6 82 4.0 7.0 5.5 0.9 106 chr3L 8551743 intron rhea + chr3L 8551796 intron rhea + chr3L 8551849 intron rhea + chr3L_6_8550001 chr3L_8550001 RAL-318 760 chr3L 8784272 8784294 chr3L 8784369 8784402 8 102 4.0 5.0 4.5 1.5 130 chr3L 8784272 intron Fhos + chr3L 8784337 intron Fhos + chr3L 8784402 intron Fhos + chr3L_8_8780001 chr3L_8780001 RAL-318 761 chr3L 8884415 8884425 chr3L 8884609 8884624 7 196 3.5 1.0 2.2 2.2 209 chr3L 8884415 intron dally + chr3L 8884520 intron dally + chr3L 8884624 intron dally + chr3L_7_8880001 chr3L_8880001 RAL-318 762 chr3L 9003947 9003970 chr3L 9004029 9004055 4 84 4.5 2.5 3.5 0.9 108 chr3L 9003947 intergenic not near genes chr3L 9004001 intergenic not near genes chr3L 9004055 intergenic not near genes chr3L_4_9000001 chr3L_9000001 RAL-318 763 chr3L 9022759 9022784 chr3L 9022834 9022860 4 75 1.5 0.5 1.0 2.0 101 chr3L 9022759 intergenic not near genes chr3L 9022810 intergenic not near genes chr3L 9022860 intergenic not near genes chr3L_4_9020001 chr3L_9020001 RAL-318 764 chr3L 9076937 9076960 chr3L 9084497 9084520 412 14 7558 4.5 7.5 6.0 2.0 7583 chr3L 9076937 exon Tequila + chr3L 9080728 intron Tequila + chr3L 9084520 exon Tequila + chr3L_14_9080001 chr3L_9080001 RAL-318 765 chr3L 9115245 9115274 chr3L 9115328 9115354 11 80 2.0 3.0 2.5 3.1 109 chr3L 9115245 intron bol - chr3L 9115300 intron bol - chr3L 9115354 intron bol - chr3L_11_9115001 chr3L_9115001 RAL-318 766 chr3L 9130572 9130580 chr3L 9134332 9134341 412 4 3761 6.5 6.5 6.5 0.5 3769 chr3L 9130572 intergenic bol - chr3L 9132456 intergenic not near genes chr3L 9134341 intergenic Dhpr + chr3L_4_9130001 chr3L_9130001 RAL-318 767 chr3L 9164695 9164731 chr3L 9166162 9166198 hobo 11 1466 2.5 1.5 2.0 3.7 1503 chr3L 9164695 intron Rdl - chr3L 9165446 intron Rdl - chr3L 9166198 intron Rdl - chr3L_11_9165001 chr3L_9165001 RAL-318 768 chr3L 9219247 9219277 chr3L 9219909 9219937 jockey 21 665 7.5 4.0 5.8 3.1 690 chr3L 9219247 intergenic not near genes chr3L 9219592 intergenic not near genes chr3L 9219937 intergenic not near genes chr3L_21_9215001 chr3L_9215001 RAL-318 769 chr3L 9270636 9270647 chr3L 9278385 9278398 roo 7 7750 5.0 2.5 3.8 1.5 7762 chr3L 9270636 intron GluRIB + chr3L 9274517 intron GluRIB + chr3L 9278398 exon GluRIB + chr3L_7_9270001 chr3L_9270001 RAL-318 770 chr3L 9443517 9443541 chr3L 9445308 9445332 S-element 5 1791 0.5 1.0 0.8 2.8 1815 chr3L 9443517 intron CG33926 + chr3L 9444424 intron CG33926 + chr3L 9445332 intron CG33926 + chr3L_5_9440001 chr3L_9440001 RAL-318 771 chr3L 9501702 9501729 chr3L 9502186 9502215 roo 4 486 0.5 3.0 1.8 1.4 513 chr3L 9501702 intron path - chr3L 9501958 intron path - chr3L 9502215 intron path - chr3L_4_9500001 chr3L_9500001 RAL-318 772 chr3L 9533753 9533785 chr3L 9541313 9541345 412 5 7554 2.5 6.5 4.5 0.9 7592 chr3L 9533753 intergenic not near genes chr3L 9537549 intergenic not near genes chr3L 9541345 intergenic not near genes chr3L_5_9535001 chr3L_9535001 RAL-318 773 chr3L 9575906 9575943 chr3L 9580984 9581015 jockey 12 5075 7.0 4.5 5.8 1.8 5109 chr3L 9575906 intron CG42673 + chr3L 9578460 intron CG42673 + chr3L 9581015 intron CG42673 + chr3L_12_9575001 chr3L_9575001 RAL-318 774 chr3L 9637855 9637887 chr3L 9637937 9637968 4 82 2.5 0.5 1.5 1.6 113 chr3L 9637855 intron fry - chr3L 9637912 intron fry - chr3L 9637968 intron fry - chr3L_4_9635001 chr3L_9635001 RAL-318 775 chr3L 9639033 9639062 chr3L 9639118 9639147 7 85 0.0 3.0 1.5 2.8 114 chr3L 9639033 intron fry - chr3L 9639090 intron fry - chr3L 9639147 intron fry - chr3L_7_9635001 chr3L_9635001 RAL-318 776 chr3L 9646468 9646492 chr3L 9646591 9646601 7 122 3.0 0.0 1.5 2.8 133 chr3L 9646468 intron,intron fry -,CG33696 + chr3L 9646534 intron,intron fry -,CG33696 + chr3L 9646601 intron,intron fry -,CG33696 + chr3L_7_9645001 chr3L_9645001 RAL-318 777 chr3L 9646809 9646835 chr3L 9646907 9646933 5 98 1.5 1.0 1.2 2.3 124 chr3L 9646809 intron,intron fry -,CG33696 + chr3L 9646871 intron,intron fry -,CG33696 + chr3L 9646933 intron,intron fry -,CG33696 + chr3L_5_9645001 chr3L_9645001 RAL-318 778 chr3L 9809731 9809740 chr3L 9809805 9809817 5 76 5.5 3.5 4.5 0.9 86 chr3L 9809731 intergenic not near genes chr3L 9809774 intergenic not near genes chr3L 9809817 intergenic not near genes chr3L_5_9805001 chr3L_9805001 RAL-318 779 chr3L 9918881 9918914 chr3L 9918974 9919009 17 93 1.5 1.0 1.2 7.7 128 chr3L 9918881 intron CG34356 + chr3L 9918945 intron CG34356 + chr3L 9919009 intron CG34356 + chr3L_17_9915001 chr3L_9915001 RAL-318 780 chr3L 10003162 10003180 chr3L 10003259 10003276 6 97 0.5 3.5 2.0 2.0 114 chr3L 10003162 intron dpr6 + chr3L 10003219 intron dpr6 + chr3L 10003276 intron dpr6 + chr3L_6_10000001 chr3L_10000001 RAL-318 781 chr3L 10075760 10075790 chr3L 10075855 10075882 14 95 4.5 3.0 3.8 2.9 122 chr3L 10075760 intron dpr6 + chr3L 10075821 intron dpr6 + chr3L 10075882 intron dpr6 + chr3L_14_10075001 chr3L_10075001 RAL-318 782 chr3L 10161435 10161460 chr3L 10161514 10161515 7 75 0.5 5.5 3.0 1.8 80 chr3L 10161435 intron dpr10 - chr3L 10161475 intron dpr10 - chr3L 10161515 intron dpr10 - chr3L_7_10160001 chr3L_10160001 RAL-318 783 chr3L 10214820 10214829 chr3L 10214922 10214931 4 102 0.5 4.0 2.2 1.2 111 chr3L 10214820 intergenic not near genes chr3L 10214876 intergenic not near genes chr3L 10214931 intergenic not near genes chr3L_4_10210001 chr3L_10210001 RAL-318 784 chr3L 10308752 10308773 chr3L 10308829 10308850 10 76 3.5 4.0 3.8 2.1 98 chr3L 10308752 intergenic not near genes chr3L 10308801 intergenic not near genes chr3L 10308850 intergenic not near genes chr3L_10_10305001 chr3L_10305001 RAL-318 785 chr3L 10310353 10310381 chr3L 10310449 10310478 9 97 0.5 2.0 1.2 4.1 125 chr3L 10310353 intergenic not near genes chr3L 10310416 intergenic not near genes chr3L 10310478 intergenic not near genes chr3L_9_10310001 chr3L_10310001 RAL-318 786 chr3L 10314126 10314156 chr3L 10314212 10314242 7 86 0.5 2.5 1.5 2.8 116 chr3L 10314126 intergenic not near genes chr3L 10314184 intergenic not near genes chr3L 10314242 intergenic not near genes chr3L_7_10310001 chr3L_10310001 RAL-318 787 chr3L 10414950 10414966 chr3L 10417322 10417336 Doc 5 2371 1.0 2.5 1.8 1.8 2386 chr3L 10414950 intergenic CG12362 + chr3L 10416143 intergenic not near genes chr3L 10417336 intergenic not near genes chr3L_5_10415001 chr3L_10415001 RAL-318 788 chr3L 10417568 10417601 chr3L 10417645 10417678 11 76 4.5 2.5 3.5 2.4 110 chr3L 10417568 intergenic not near genes chr3L 10417623 intergenic not near genes chr3L 10417678 intergenic not near genes chr3L_11_10415001 chr3L_10415001 RAL-318 789 chr3L 10621861 10621879 chr3L 10621948 10621965 4 87 1.0 3.0 2.0 1.3 104 chr3L 10621861 intergenic not near genes chr3L 10621913 intergenic not near genes chr3L 10621965 intergenic not near genes chr3L_4_10620001 chr3L_10620001 RAL-318 790 chr3L 10658187 10658207 chr3L 10658314 10658335 7 127 0.0 1.5 0.8 3.9 148 chr3L 10658187 intron CG32066 - chr3L 10658261 intron CG32066 - chr3L 10658335 intron CG32066 - chr3L_7_10655001 chr3L_10655001 RAL-318 791 chr3L 10745549 10745563 chr3L 10745629 10745643 4 80 2.0 1.0 1.5 1.6 94 chr3L 10745549 intergenic not near genes chr3L 10745596 intergenic not near genes chr3L 10745643 intergenic not near genes chr3L_4_10745001 chr3L_10745001 RAL-318 792 chr3L 10762831 10762851 chr3L 10762914 10762935 7 84 6.0 1.0 3.5 1.6 104 chr3L 10762831 intergenic not near genes chr3L 10762883 intergenic not near genes chr3L 10762935 intergenic not near genes chr3L_7_10760001 chr3L_10760001 RAL-318 793 chr3L 10764130 10764148 chr3L 10764210 10764228 9 77 4.5 2.0 3.2 2.1 98 chr3L 10764130 intergenic not near genes chr3L 10764179 intergenic not near genes chr3L 10764228 intergenic not near genes chr3L_9_10760001 chr3L_10760001 RAL-318 794 chr3L 10956451 10956468 chr3L 10956569 10956586 5 118 2.0 0.5 1.2 2.3 135 chr3L 10956451 intergenic not near genes chr3L 10956518 intergenic not near genes chr3L 10956586 intergenic not near genes chr3L_5_10955001 chr3L_10955001 RAL-318 795 chr3L 11087058 11087088 chr3L 11088846 11088877 S-element 4 1789 2.0 3.0 2.5 1.1 1819 chr3L 11087058 intron JIL-1 - chr3L 11087968 intron JIL-1 - chr3L 11088877 intron JIL-1 - chr3L_4_11085001 chr3L_11085001 RAL-318 796 chr3L 11105290 11105325 chr3L 11107001 11107036 X-element 5 1711 1.5 3.0 2.2 1.6 1746 chr3L 11105290 intergenic not near genes chr3L 11106163 intergenic not near genes chr3L 11107036 exon CG32073 - chr3L_5_11105001 chr3L_11105001 RAL-318 797 chr3L 11145547 11145552 chr3L 11145635 11145640 4 88 0.0 3.5 1.8 1.4 93 chr3L 11145547 intron CG32082 + chr3L 11145594 intron CG32082 + chr3L 11145640 intron CG32082 + chr3L_4_11145001 chr3L_11145001 RAL-318 798 chr3L 11279740 11279746 chr3L 11279813 11279821 5 74 4.0 2.0 3.0 1.2 81 chr3L 11279740 intergenic not near genes chr3L 11279780 intergenic not near genes chr3L 11279821 intergenic not near genes chr3L_5_11275001 chr3L_11275001 RAL-318 799 chr3L 11279747 11279749 chr3L 11279803 11279820 4 62 2.5 1.5 2.0 1.3 73 chr3L 11279747 intergenic not near genes chr3L 11279784 intergenic not near genes chr3L 11279820 intergenic not near genes chr3L_4_11275001 chr3L_11275001 RAL-318 800 chr3L 11329695 11329722 chr3L 11332900 11332922 jockey 6 3204 5.5 2.0 3.8 1.2 3227 chr3L 11329695 intergenic not near genes chr3L 11331308 intergenic not near genes chr3L 11332922 intergenic not near genes chr3L_6_11330001 chr3L_11330001 RAL-318 801 chr3L 11435563 11435588 chr3L 11435732 11435751 9 168 3.0 5.0 4.0 1.8 188 chr3L 11435563 intergenic CR44548 +,CG6149 - chr3L 11435657 5` UTR CR44548 + chr3L 11435751 5` UTR CR44548 + chr3L_9_11435001 chr3L_11435001 RAL-318 802 chr3L 11579560 11579576 chr3L 11579666 11579682 4 106 4.5 2.5 3.5 0.9 122 chr3L 11579560 intergenic CG43390 - chr3L 11579621 intergenic CG43390 - chr3L 11579682 intergenic CG43390 - chr3L_4_11575001 chr3L_11575001 RAL-318 803 chr3L 11678100 11678124 chr3L 11678187 11678211 7 84 0.5 1.0 0.8 3.9 111 chr3L 11678100 intron CG32085 - chr3L 11678156 intron CG32085 - chr3L 11678211 intron CG32085 - chr3L_7_11675001 chr3L_11675001 RAL-318 804 chr3L 11695656 11695676 chr3L 11696068 11696088 5 412 3.5 3.5 3.5 1.1 432 chr3L 11695656 intron CG11652 - chr3L 11695872 intron CG11652 - chr3L 11696088 intron CG11652 - chr3L_5_11695001 chr3L_11695001 RAL-318 805 chr3L 11744012 11744041 chr3L 11744120 11744147 14 107 5.0 0.0 2.5 4.0 135 chr3L 11744012 exon CG6024 - chr3L 11744080 intron CG6024 - chr3L 11744147 intron CG6024 - chr3L_14_11740001 chr3L_11740001 RAL-318 806 chr3L 11757916 11757934 chr3L 11758013 11758030 4 97 5.5 0.0 2.8 1.1 114 chr3L 11757916 intron CG6024 - chr3L 11757973 intron CG6024 - chr3L 11758030 intron CG6024 - chr3L_4_11755001 chr3L_11755001 RAL-318 807 chr3L 11811454 11811487 chr3L 11811532 11811565 8 77 0.5 2.0 1.2 3.6 111 chr3L 11811454 intron CG42255 - chr3L 11811510 intron CG42255 - chr3L 11811565 exon CG42255 - chr3L_8_11810001 chr3L_11810001 RAL-318 808 chr3L 11849331 11849352 chr3L 11849431 11849452 9 99 3.0 3.5 3.2 2.1 121 chr3L 11849331 intergenic not near genes chr3L 11849392 intergenic not near genes chr3L 11849452 intergenic not near genes chr3L_9_11845001 chr3L_11845001 RAL-318 809 chr3L 11850143 11850169 chr3L 11850235 11850264 6 94 1.5 0.5 1.0 3.0 121 chr3L 11850143 intergenic not near genes chr3L 11850204 intergenic CG44837 - chr3L 11850264 intergenic CG44837 - chr3L_6_11850001 chr3L_11850001 RAL-318 810 chr3L 11884983 11885004 chr3L 11885077 11885097 4 91 2.0 4.5 3.2 1.0 114 chr3L 11884983 intron CG44837 - chr3L 11885040 intron CG44837 - chr3L 11885097 intron CG44837 - chr3L_4_11885001 chr3L_11885001 RAL-318 811 chr3L 11984568 11984594 chr3L 11984657 11984671 10 85 1.5 3.0 2.2 3.1 103 chr3L 11984568 intergenic CG6938 + chr3L 11984620 intergenic CG6938 + chr3L 11984671 intergenic CG6938 + chr3L_10_11980001 chr3L_11980001 RAL-318 812 chr3L 12013911 12013937 chr3L 12014002 12014028 10 91 2.5 2.0 2.2 3.1 117 chr3L 12013911 intron rols - chr3L 12013970 intron rols - chr3L 12014028 intron rols - chr3L_10_12010001 chr3L_12010001 RAL-318 813 chr3L 12034900 12034914 chr3L 12034962 12034990 4 73 4.0 1.5 2.8 1.1 90 chr3L 12034900 intron rols - chr3L 12034945 intron rols - chr3L 12034990 intron rols - chr3L_4_12030001 chr3L_12030001 RAL-318 814 chr3L 12052705 12052738 chr3L 12052794 12052827 5 89 2.0 1.5 1.8 1.8 122 chr3L 12052705 intron rols - chr3L 12052766 intron rols - chr3L 12052827 intron rols - chr3L_5_12050001 chr3L_12050001 RAL-318 815 chr3L 12075425 12075446 chr3L 12075514 12075535 5 89 1.5 0.0 0.8 2.8 110 chr3L 12075425 intron Sema-5c - chr3L 12075480 intron Sema-5c - chr3L 12075535 intron Sema-5c - chr3L_5_12075001 chr3L_12075001 RAL-318 816 chr3L 12089086 12089106 chr3L 12089166 12089186 5 80 4.0 1.5 2.8 1.3 100 chr3L 12089086 3` UTR CG17154 + chr3L 12089136 3` UTR CG17154 + chr3L 12089186 3` UTR CG17154 + chr3L_5_12085001 chr3L_12085001 RAL-318 817 chr3L 12304099 12304117 chr3L 12304168 12304193 6 72 3.5 7.0 5.2 1.0 94 chr3L 12304099 intergenic not near genes chr3L 12304146 intergenic not near genes chr3L 12304193 intergenic not near genes chr3L_6_12300001 chr3L_12300001 RAL-318 818 chr3L 12335387 12335416 chr3L 12335466 12335494 4 74 6.0 6.0 6.0 0.6 107 chr3L 12335387 exon CG32105 + chr3L 12335440 3` UTR CG32105 + chr3L 12335494 3` UTR CG32105 + chr3L_4_12335001 chr3L_12335001 RAL-318 819 chr3L 12353937 12353951 chr3L 12354009 12354015 5 80 2.5 3.0 2.8 1.3 78 chr3L 12353937 intergenic not near genes chr3L 12353976 intergenic not near genes chr3L 12354015 intergenic not near genes chr3L_5_12350001 chr3L_12350001 RAL-318 820 chr3L 12381545 12381549 chr3L 12381623 12381627 4 78 0.5 0.5 0.5 2.7 82 chr3L 12381545 intron Ncc69 - chr3L 12381586 intron Ncc69 - chr3L 12381627 intron Ncc69 - chr3L_4_12380001 chr3L_12380001 RAL-318 821 chr3L 12406507 12406529 chr3L 12406738 12406760 5 231 3.5 4.5 4.0 1.0 253 chr3L 12406507 intron CG32103 - chr3L 12406634 intron CG32103 - chr3L 12406760 intron CG32103 - chr3L_5_12405001 chr3L_12405001 RAL-318 822 chr3L 12446273 12446300 chr3L 12446348 12446377 6 71 2.5 2.0 2.2 1.9 104 chr3L 12446273 intergenic not near genes chr3L 12446325 intergenic not near genes chr3L 12446377 intergenic not near genes chr3L_6_12445001 chr3L_12445001 RAL-318 823 chr3L 12467252 12467284 chr3L 12467337 12467369 4 85 0.0 1.0 0.5 2.7 117 chr3L 12467252 intron eyg - chr3L 12467310 intron eyg - chr3L 12467369 intron eyg - chr3L_4_12465001 chr3L_12465001 RAL-318 824 chr3L 12470849 12470862 chr3L 12470919 12470938 4 73 4.0 0.0 2.0 1.3 89 chr3L 12470849 intergenic not near genes chr3L 12470894 intergenic not near genes chr3L 12470938 intergenic not near genes chr3L_4_12470001 chr3L_12470001 RAL-318 825 chr3L 12566820 12566837 chr3L 12566923 12566926 6 101 3.0 2.5 2.8 1.6 106 chr3L 12566820 intron sowah - chr3L 12566873 intron sowah - chr3L 12566926 intron sowah - chr3L_6_12565001 chr3L_12565001 RAL-318 826 chr3L 12578046 12578072 chr3L 12578134 12578160 5 88 1.5 0.5 1.0 2.5 114 chr3L 12578046 intergenic not near genes chr3L 12578103 intergenic not near genes chr3L 12578160 intergenic not near genes chr3L_5_12575001 chr3L_12575001 RAL-318 827 chr3L 12801993 12802008 chr3L 12802063 12802075 4 72 0.5 3.0 1.8 1.4 82 chr3L 12801993 intron Atg1 - chr3L 12802034 intron Atg1 - chr3L 12802075 intron Atg1 - chr3L_4_12800001 chr3L_12800001 RAL-318 828 chr3L 12874925 12874954 chr3L 12877217 12877246 jockey 6 2292 2.5 1.0 1.8 2.1 2321 chr3L 12874925 intergenic not near genes chr3L 12876086 intergenic not near genes chr3L 12877246 intergenic not near genes chr3L_6_12875001 chr3L_12875001 RAL-318 829 chr3L 12894801 12894821 chr3L 12894879 12894899 10 77 7.0 5.0 6.0 1.4 98 chr3L 12894801 intergenic CG14118 + chr3L 12894850 intergenic CG14118 + chr3L 12894899 intergenic CG14118 + chr3L_10_12890001 chr3L_12890001 RAL-318 830 chr3L 12919001 12919026 chr3L 12924906 12924910 Rt1c 8 5900 2.5 2.5 2.5 2.3 5909 chr3L 12919001 intergenic not near genes chr3L 12921956 intergenic not near genes chr3L 12924910 intergenic not near genes chr3L_8_12920001 chr3L_12920001 RAL-318 831 chr3L 12929734 12929743 chr3L 12930050 12930058 4 316 0.5 3.5 2.0 1.3 324 chr3L 12929734 intergenic not near genes chr3L 12929896 intergenic not near genes chr3L 12930058 intergenic not near genes chr3L_4_12925001 chr3L_12925001 RAL-318 832 chr3L 12936680 12936712 chr3L 12936764 12936792 8 83 2.5 3.0 2.8 2.1 112 chr3L 12936680 intergenic not near genes chr3L 12936736 intergenic not near genes chr3L 12936792 intergenic not near genes chr3L_8_12935001 chr3L_12935001 RAL-318 833 chr3L 12978769 12978789 chr3L 12978848 12978868 5 78 1.0 0.5 0.8 2.8 99 chr3L 12978769 intergenic not near genes chr3L 12978818 intergenic not near genes chr3L 12978868 intergenic not near genes chr3L_5_12975001 chr3L_12975001 RAL-318 834 chr3L 13091276 13091310 chr3L 13091352 13091383 11 66 0.5 3.0 1.8 3.9 107 chr3L 13091276 intergenic not near genes chr3L 13091330 intergenic not near genes chr3L 13091383 intergenic not near genes chr3L_11_13090001 chr3L_13090001 RAL-318 835 chr3L 13095816 13095834 chr3L 13095903 13095922 8 87 4.5 0.0 2.2 2.5 106 chr3L 13095816 intergenic not near genes chr3L 13095869 intergenic not near genes chr3L 13095922 intergenic not near genes chr3L_8_13095001 chr3L_13095001 RAL-318 836 chr3L 13189778 13189808 chr3L 13189858 13189872 5 76 2.5 5.0 3.8 1.0 94 chr3L 13189778 intergenic not near genes chr3L 13189825 intergenic not near genes chr3L 13189872 intergenic not near genes chr3L_5_13185001 chr3L_13185001 RAL-318 837 chr3L 13205251 13205272 chr3L 13205337 13205356 8 86 0.5 4.5 2.5 2.3 105 chr3L 13205251 intergenic not near genes chr3L 13205304 intergenic not near genes chr3L 13205356 intergenic not near genes chr3L_8_13205001 chr3L_13205001 RAL-318 838 chr3L 13303438 13303470 chr3L 13303522 13303554 10 83 2.5 3.0 2.8 2.6 116 chr3L 13303438 5` UTR CR44555 + chr3L 13303496 5` UTR CR44555 + chr3L 13303554 5` UTR CR44555 + chr3L_10_13300001 chr3L_13300001 RAL-318 839 chr3L 13400525 13400546 chr3L 13400601 13400622 7 76 1.0 0.5 0.8 3.9 97 chr3L 13400525 intron sens - chr3L 13400574 intron sens - chr3L 13400622 intron sens - chr3L_7_13400001 chr3L_13400001 RAL-318 840 chr3L 13422889 13422903 chr3L 13422992 13423006 7 112 0.5 3.0 1.8 2.5 117 chr3L 13422889 intergenic CG33263 - chr3L 13422948 intergenic CG33263 - chr3L 13423006 intergenic CG33263 - chr3L_7_13420001 chr3L_13420001 RAL-318 841 chr3L 13525157 13525184 chr3L 13532953 13532976 roo 9 7795 4.5 4.0 4.2 1.7 7819 chr3L 13525157 intergenic not near genes chr3L 13529066 intergenic not near genes chr3L 13532976 intergenic not near genes chr3L_9_13525001 chr3L_13525001 RAL-318 842 chr3L 13629530 13629549 chr3L 13629641 13629660 6 111 2.0 7.5 4.8 1.0 130 chr3L 13629530 intron bru-3 - chr3L 13629595 intron bru-3 - chr3L 13629660 intron bru-3 - chr3L_6_13625001 chr3L_13625001 RAL-318 843 chr3L 13682354 13682382 chr3L 13682426 13682458 7 71 5.5 2.5 4.0 1.4 104 chr3L 13682354 intron bru-3 - chr3L 13682406 intron bru-3 - chr3L 13682458 intron bru-3 - chr3L_7_13680001 chr3L_13680001 RAL-318 844 chr3L 13721013 13721038 chr3L 13721092 13721118 4 80 3.5 1.5 2.5 1.1 105 chr3L 13721013 intron bru-3 - chr3L 13721066 intron bru-3 - chr3L 13721118 intron bru-3 - chr3L_4_13720001 chr3L_13720001 RAL-318 845 chr3L 13721656 13721684 chr3L 13721737 13721763 10 79 1.5 4.5 3.0 2.5 107 chr3L 13721656 intron bru-3 - chr3L 13721710 intron bru-3 - chr3L 13721763 intron bru-3 - chr3L_10_13720001 chr3L_13720001 RAL-318 846 chr3L 13752776 13752800 chr3L 13752870 13752885 7 93 5.5 3.0 4.2 1.3 109 chr3L 13752776 intron bru-3 - chr3L 13752830 intron bru-3 - chr3L 13752885 intron bru-3 - chr3L_7_13750001 chr3L_13750001 RAL-318 847 chr3L 13834336 13834346 chr3L 13834444 13834455 6 108 8.0 5.5 6.8 0.8 119 chr3L 13834336 intergenic not near genes chr3L 13834396 intergenic not near genes chr3L 13834455 intergenic not near genes chr3L_6_13830001 chr3L_13830001 RAL-318 848 chr3L 13894652 13894663 chr3L 13894957 13894967 4 304 3.5 4.5 4.0 0.8 315 chr3L 13894652 intron dysc - chr3L 13894810 intron dysc - chr3L 13894967 intron dysc - chr3L_4_13890001 chr3L_13890001 RAL-318 849 chr3L 13907590 13907623 chr3L 13907677 13907710 6 87 0.5 4.0 2.2 1.9 120 chr3L 13907590 3` UTR Rgl - chr3L 13907650 3` UTR Rgl - chr3L 13907710 3` UTR Rgl - chr3L_6_13905001 chr3L_13905001 RAL-318 850 chr3L 14076296 14076320 chr3L 14076374 14076395 6 77 0.5 4.0 2.2 1.9 99 chr3L 14076296 intron btl + chr3L 14076346 intron btl + chr3L 14076395 intron btl + chr3L_6_14075001 chr3L_14075001 RAL-318 851 chr3L 14099427 14099450 chr3L 14099517 14099523 5 86 0.5 4.0 2.2 1.6 96 chr3L 14099427 intergenic not near genes chr3L 14099475 intergenic not near genes chr3L 14099523 intergenic not near genes chr3L_5_14095001 chr3L_14095001 RAL-318 852 chr3L 14245572 14245588 chr3L 14245665 14245682 1360 6 91 4.5 3.5 4.0 1.2 110 chr3L 14245572 3` UTR CR44561 - chr3L 14245627 3` UTR CR44561 - chr3L 14245682 3` UTR CR44561 - chr3L_6_14245001 chr3L_14245001 RAL-318 853 chr3L 14282586 14282602 chr3L 14282666 14282682 4 80 5.5 4.5 5.0 0.7 96 chr3L 14282586 intron fz + chr3L 14282634 intron fz + chr3L 14282682 intron fz + chr3L_4_14280001 chr3L_14280001 RAL-318 854 chr3L 14295985 14296016 chr3L 14296471 14296484 roo 10 482 8.5 2.0 5.2 1.6 499 chr3L 14295985 intron fz + chr3L 14296234 intron fz + chr3L 14296484 intron fz + chr3L_10_14295001 chr3L_14295001 RAL-318 855 chr3L 14312052 14312059 chr3L 14316837 14316870 X-element 4 4802 1.5 2.0 1.8 1.4 4818 chr3L 14312052 exon fz + chr3L 14314461 intron fz + chr3L 14316870 intron fz + chr3L_4_14310001 chr3L_14310001 RAL-318 856 chr3L 14326963 14326995 chr3L 14327099 14327131 5 131 2.5 2.5 2.5 1.4 168 chr3L 14326963 intron fz + chr3L 14327047 intron fz + chr3L 14327131 intron fz + chr3L_5_14325001 chr3L_14325001 RAL-318 857 chr3L 14468447 14468478 chr3L 14473653 14473684 copia 4 5206 0.5 2.5 1.5 1.6 5237 chr3L 14468447 intron bbg - chr3L 14471066 intron bbg - chr3L 14473684 intron bbg - chr3L_4_14470001 chr3L_14470001 RAL-318 858 chr3L 14486020 14486040 chr3L 14486101 14486120 5 81 3.0 2.0 2.5 1.4 100 chr3L 14486020 intron bbg - chr3L 14486070 intron bbg - chr3L 14486120 intron bbg - chr3L_5_14485001 chr3L_14485001 RAL-318 859 chr3L 14635228 14635253 chr3L 14635323 14635351 4 97 2.5 1.5 2.0 1.3 123 chr3L 14635228 intron dlp + chr3L 14635290 intron dlp + chr3L 14635351 intron dlp + chr3L_4_14635001 chr3L_14635001 RAL-318 860 chr3L 14654362 14654383 chr3L 14654442 14654463 6 80 4.0 0.5 2.2 1.9 101 chr3L 14654362 intron dlp + chr3L 14654412 intron dlp + chr3L 14654463 intron dlp + chr3L_6_14650001 chr3L_14650001 RAL-318 861 chr3L 14665024 14665057 chr3L 14665149 14665181 15 124 4.5 4.5 4.5 2.7 157 chr3L 14665024 exon dlp + chr3L 14665102 intron dlp + chr3L 14665181 intron dlp + chr3L_15_14665001 chr3L_14665001 RAL-318 862 chr3L 14870052 14870078 chr3L 14870128 14870154 12 76 3.5 2.5 3.0 3.0 102 chr3L 14870052 intron CG17839 + chr3L 14870103 intron CG17839 + chr3L 14870154 intron CG17839 + chr3L_12_14870001 chr3L_14870001 RAL-318 863 chr3L 14893657 14893687 chr3L 14893741 14893772 9 84 3.0 3.5 3.2 2.1 115 chr3L 14893657 intergenic CG34245 - chr3L 14893714 intergenic CG34245 - chr3L 14893772 3` UTR CG34245 - chr3L_9_14890001 chr3L_14890001 RAL-318 864 chr3L 14973636 14973661 chr3L 14973716 14973741 6 80 2.0 3.5 2.8 1.6 105 chr3L 14973636 intergenic Brd + chr3L 14973688 intergenic Brd + chr3L 14973741 intergenic not near genes chr3L_6_14970001 chr3L_14970001 RAL-318 865 chr3L 15035543 15035573 chr3L 15036473 15036503 8 928 5.0 3.0 4.0 1.6 960 chr3L 15035543 intron Sytbeta - chr3L 15036023 intron Sytbeta - chr3L 15036503 intron Sytbeta - chr3L_8_15035001 chr3L_15035001 RAL-318 866 chr3L 15209066 15209099 chr3L 15209152 15209185 7 86 2.5 1.0 1.8 2.5 119 chr3L 15209066 intergenic CG6888 + chr3L 15209126 intergenic not near genes chr3L 15209185 intergenic not near genes chr3L_7_15205001 chr3L_15205001 RAL-318 867 chr3L 15286743 15286767 chr3L 15286822 15286848 6 78 1.5 1.5 1.5 2.4 105 chr3L 15286743 intergenic not near genes chr3L 15286796 intergenic not near genes chr3L 15286848 intergenic not near genes chr3L_6_15285001 chr3L_15285001 RAL-318 868 chr3L 15381159 15381190 chr3L 15381472 15381503 6 313 1.0 0.0 0.5 4.0 344 chr3L 15381159 intergenic not near genes chr3L 15381331 intergenic not near genes chr3L 15381503 intergenic not near genes chr3L_6_15380001 chr3L_15380001 RAL-318 869 chr3L 15406026 15406038 chr3L 15406109 15406121 6 83 4.5 3.0 3.8 1.2 95 chr3L 15406026 intergenic not near genes chr3L 15406074 intergenic not near genes chr3L 15406121 intergenic not near genes chr3L_6_15405001 chr3L_15405001 RAL-318 870 chr3L 15502517 15502534 chr3L 15502596 15502613 7 79 0.5 3.5 2.0 2.3 96 chr3L 15502517 intron CG7272 + chr3L 15502565 intron CG7272 + chr3L 15502613 intron CG7272 + chr3L_7_15500001 chr3L_15500001 RAL-318 871 chr3L 15615955 15615958 chr3L 15616021 15616054 4 88 0.5 1.0 0.8 2.2 99 chr3L 15615955 intron comm3 - chr3L 15616004 intron comm3 - chr3L 15616054 intron comm3 - chr3L_4_15615001 chr3L_15615001 RAL-318 872 chr3L 15633189 15633203 chr3L 15633268 15633283 5 80 2.5 1.0 1.8 1.8 94 chr3L 15633189 intron comm3 - chr3L 15633236 intron comm3 - chr3L 15633283 intron comm3 - chr3L_5_15630001 chr3L_15630001 RAL-318 873 chr3L 15732125 15732158 chr3L 15732205 15732210 6 75 1.0 0.0 0.5 4.0 85 chr3L 15732125 intergenic not near genes chr3L 15732168 intergenic not near genes chr3L 15732210 intergenic not near genes chr3L_6_15730001 chr3L_15730001 RAL-318 874 chr3L 15735035 15735064 chr3L 15735114 15735144 12 80 2.0 2.0 2.0 4.0 109 chr3L 15735035 intergenic not near genes chr3L 15735090 intergenic not near genes chr3L 15735144 intergenic not near genes chr3L_12_15735001 chr3L_15735001 RAL-318 875 chr3L 15775829 15775864 chr3L 15775906 15775941 13 76 1.0 3.0 2.0 4.3 112 chr3L 15775829 intergenic not near genes chr3L 15775885 intergenic not near genes chr3L 15775941 intergenic not near genes chr3L_13_15775001 chr3L_15775001 RAL-318 876 chr3L 15784576 15784595 chr3L 15784673 15784692 4 97 2.0 1.5 1.8 1.4 116 chr3L 15784576 intergenic not near genes chr3L 15784634 intergenic not near genes chr3L 15784692 intergenic not near genes chr3L_4_15780001 chr3L_15780001 RAL-318 877 chr3L 15878682 15878709 chr3L 15878755 15878779 9 75 4.0 3.5 3.8 1.9 97 chr3L 15878682 intron pHCl - chr3L 15878730 intron pHCl - chr3L 15878779 intron pHCl - chr3L_9_15875001 chr3L_15875001 RAL-318 878 chr3L 16184107 16184136 chr3L 16188926 16188954 X-element 7 4817 0.0 3.0 1.5 2.8 4847 chr3L 16184107 intergenic not near genes chr3L 16186530 intergenic not near genes chr3L 16188954 intergenic not near genes chr3L_7_16185001 chr3L_16185001 RAL-318 879 chr3L 16194331 16194365 chr3L 16194421 16194446 7 81 1.5 5.5 3.5 1.6 115 chr3L 16194331 intergenic not near genes chr3L 16194388 intergenic not near genes chr3L 16194446 intergenic not near genes chr3L_7_16190001 chr3L_16190001 RAL-318 880 chr3L 16334195 16334208 chr3L 16334278 16334291 5 83 1.5 3.0 2.2 1.6 96 chr3L 16334195 intergenic CG13056 + chr3L 16334243 intergenic CG13056 + chr3L 16334291 intergenic not near genes chr3L_5_16330001 chr3L_16330001 RAL-318 881 chr3L 16437068 16437091 chr3L 16437147 16437148 7 76 2.0 0.0 1.0 3.5 80 chr3L 16437068 intron,intron CG33158 +,dsx-c73A - chr3L 16437108 intron,intron CG33158 +,dsx-c73A - chr3L 16437148 intron,intron CG33158 +,dsx-c73A - chr3L_7_16435001 chr3L_16435001 RAL-318 882 chr3L 16443851 16443869 chr3L 16446190 16446209 Doc 4 2340 4.0 4.0 4.0 0.8 2358 chr3L 16443851 intron,intron CG33158 +,dsx-c73A - chr3L 16445030 intron,intron CG33158 +,dsx-c73A - chr3L 16446209 intron,intron CG33158 +,dsx-c73A - chr3L_4_16445001 chr3L_16445001 RAL-318 883 chr3L 16540057 16540079 chr3L 16540145 16540167 6 85 0.5 2.5 1.5 2.4 110 chr3L 16540057 intron CG43373 - chr3L 16540112 intron CG43373 - chr3L 16540167 intron CG43373 - chr3L_6_16540001 chr3L_16540001 RAL-318 884 chr3L 16684017 16684051 chr3L 16689238 16689272 copia 4 5221 1.0 0.5 0.8 2.2 5255 chr3L 16684017 intron,intron Lasp -,CG43954 - chr3L 16686644 intron,intron Lasp -,CG43954 - chr3L 16689272 intron,intron,5` UTR Lasp -,CG43954 -,CR45179 + chr3L_4_16685001 chr3L_16685001 RAL-318 885 chr3L 16746827 16746841 chr3L 16746920 16746920 6 90 4.5 5.0 4.8 1.0 93 chr3L 16746827 intergenic not near genes chr3L 16746874 intergenic not near genes chr3L 16746920 intergenic not near genes chr3L_6_16745001 chr3L_16745001 RAL-318 886 chr3L 16772492 16772511 chr3L 16772582 16772601 5 90 3.5 3.0 3.2 1.2 109 chr3L 16772492 intron Nrt + chr3L 16772546 intron Nrt + chr3L 16772601 intron Nrt + chr3L_5_16770001 chr3L_16770001 RAL-318 887 chr3L 16845025 16845043 chr3L 16845134 16845156 4 111 3.5 2.0 2.8 1.1 131 chr3L 16845025 intergenic CG9669 -,CG9715 +,TSG101 + chr3L 16845090 intergenic CG9669 -,CG9715 + chr3L 16845156 intergenic CG9669 -,CG9715 + chr3L_4_16845001 chr3L_16845001 RAL-318 888 chr3L 16861043 16861053 chr3L 16861129 16861155 6 99 4.0 3.0 3.5 1.3 112 chr3L 16861043 intron,intron Rh4 -,CG13029 + chr3L 16861099 intron,intron Rh4 -,CG13029 + chr3L 16861155 intron,exon Rh4 -,CG13029 + chr3L_6_16860001 chr3L_16860001 RAL-318 889 chr3L 16879828 16879856 chr3L 16879920 16879948 5 92 1.5 2.0 1.8 1.8 120 chr3L 16879828 intron Lmpt + chr3L 16879888 intron Lmpt + chr3L 16879948 intron Lmpt + chr3L_5_16875001 chr3L_16875001 RAL-318 890 chr3L 16945726 16945749 chr3L 16954879 16954900 roo 4 9152 5.0 5.0 5.0 0.7 9174 chr3L 16945726 exon Obp73a + chr3L 16950313 intergenic not near genes chr3L 16954900 5` UTR Nc73EF + chr3L_4_16950001 chr3L_16950001 RAL-318 891 chr3L 17026799 17026819 chr3L 17026873 17026900 6 80 5.5 2.0 3.8 1.2 101 chr3L 17026799 exon Fit2 + chr3L 17026850 3` UTR Fit2 + chr3L 17026900 3` UTR Fit2 + chr3L_6_17025001 chr3L_17025001 RAL-318 892 chr3L 17331069 17331097 chr3L 17331157 17331187 4 90 1.5 1.0 1.2 1.8 118 chr3L 17331069 intergenic not near genes chr3L 17331128 intergenic not near genes chr3L 17331187 intergenic not near genes chr3L_4_17330001 chr3L_17330001 RAL-318 893 chr3L 17367434 17367460 chr3L 17367528 17367554 7 94 1.5 2.0 1.8 2.5 120 chr3L 17367434 intergenic CR45688 +,Cad74A - chr3L 17367494 intergenic CR45688 +,Cad74A - chr3L 17367554 intergenic CR45688 +,Cad74A - chr3L_7_17365001 chr3L_17365001 RAL-318 894 chr3L 17510753 17510764 chr3L 17510837 17510848 4 84 2.0 4.0 3.0 1.0 95 chr3L 17510753 exon Oatp74D + chr3L 17510800 intron Oatp74D + chr3L 17510848 intron Oatp74D + chr3L_4_17510001 chr3L_17510001 RAL-318 895 chr3L 17516980 17517009 chr3L 17524538 17524567 412 13 7555 2.0 1.5 1.8 4.6 7587 chr3L 17516980 intron CG7564 + chr3L 17520774 intron CG7564 + chr3L 17524567 3` UTR CG7564 + chr3L_13_17520001 chr3L_17520001 RAL-318 896 chr3L 17612218 17612248 chr3L 17612300 17612332 8 77 2.5 4.5 3.5 1.8 114 chr3L 17612218 intron Eip74EF - chr3L 17612275 intron Eip74EF - chr3L 17612332 intron Eip74EF - chr3L_8_17610001 chr3L_17610001 RAL-318 897 chr3L 17689087 17689122 chr3L 17689175 17689198 9 86 2.0 1.5 1.8 3.2 111 chr3L 17689087 intergenic not near genes chr3L 17689142 intergenic not near genes chr3L 17689198 intergenic not near genes chr3L_9_17685001 chr3L_17685001 RAL-318 898 chr3L 17696824 17696854 chr3L 17696900 17696930 9 75 1.5 1.5 1.5 3.6 106 chr3L 17696824 intron Ccn + chr3L 17696877 intron Ccn + chr3L 17696930 intron Ccn + chr3L_9_17695001 chr3L_17695001 RAL-318 899 chr3L 17918381 17918385 chr3L 17921183 17921188 opus 5 2803 3.5 2.5 3.0 1.2 2807 chr3L 17918381 intergenic not near genes chr3L 17919784 intergenic not near genes chr3L 17921188 intergenic not near genes chr3L_5_17915001 chr3L_17915001 RAL-318 900 chr3L 18248954 18248985 chr3L 18249051 18249083 5 98 1.5 4.0 2.8 1.3 129 chr3L 18248954 intergenic not near genes chr3L 18249018 intergenic not near genes chr3L 18249083 intergenic not near genes chr3L_5_18245001 chr3L_18245001 RAL-318 901 chr3L 18253693 18253705 chr3L 18253897 18253913 4 207 4.0 0.0 2.0 1.3 220 chr3L 18253693 intergenic not near genes chr3L 18253803 intergenic not near genes chr3L 18253913 intergenic not near genes chr3L_4_18250001 chr3L_18250001 RAL-318 902 chr3L 18311238 18311267 chr3L 18312055 18312084 16 815 5.0 4.0 4.5 2.9 846 chr3L 18311238 intergenic not near genes chr3L 18311661 intergenic not near genes chr3L 18312084 intergenic not near genes chr3L_16_18310001 chr3L_18310001 RAL-318 903 chr3L 18321082 18321105 chr3L 18321167 18321190 8 86 2.0 1.5 1.8 2.9 108 chr3L 18321082 intergenic not near genes chr3L 18321136 intergenic not near genes chr3L 18321190 intergenic not near genes chr3L_8_18320001 chr3L_18320001 RAL-318 904 chr3L 18376090 18376109 chr3L 18376176 18376198 8 88 2.0 0.5 1.2 3.6 108 chr3L 18376090 intergenic not near genes chr3L 18376144 intergenic not near genes chr3L 18376198 intergenic not near genes chr3L_8_18375001 chr3L_18375001 RAL-318 905 chr3L 18393869 18393872 chr3L 18393937 18393947 4 76 2.0 7.5 4.8 0.7 78 chr3L 18393869 intergenic not near genes chr3L 18393908 intergenic not near genes chr3L 18393947 intergenic not near genes chr3L_4_18390001 chr3L_18390001 RAL-318 906 chr3L 18464498 18464513 chr3L 18464582 18464599 5 85 3.5 4.0 3.8 1.0 101 chr3L 18464498 intergenic not near genes chr3L 18464548 intergenic not near genes chr3L 18464599 intergenic not near genes chr3L_5_18460001 chr3L_18460001 RAL-318 907 chr3L 18528642 18528658 chr3L 18537801 18537816 roo 5 9158 0.5 1.5 1.0 2.5 9174 chr3L 18528642 intergenic not near genes chr3L 18533229 intergenic not near genes chr3L 18537816 intergenic not near genes chr3L_5_18530001 chr3L_18530001 RAL-318 908 chr3L 18546703 18546737 chr3L 18546797 18546826 6 93 1.0 4.0 2.5 1.7 123 chr3L 18546703 intergenic not near genes chr3L 18546764 intergenic not near genes chr3L 18546826 intergenic not near genes chr3L_6_18545001 chr3L_18545001 RAL-318 909 chr3L 18567036 18567053 chr3L 18567122 18567139 7 86 1.0 3.0 2.0 2.3 103 chr3L 18567036 intron AstC-R1 + chr3L 18567088 intron AstC-R1 + chr3L 18567139 intron AstC-R1 + chr3L_7_18565001 chr3L_18565001 RAL-318 910 chr3L 18679677 18679703 chr3L 18679783 18679809 9 106 4.5 2.0 3.2 2.1 132 chr3L 18679677 intergenic not near genes chr3L 18679743 intergenic not near genes chr3L 18679809 intergenic not near genes chr3L_9_18675001 chr3L_18675001 RAL-318 911 chr3L 18772407 18772428 chr3L 18781088 18781109 roo 6 8680 3.5 3.0 3.2 1.4 8702 chr3L 18772407 intron ftz-f1 - chr3L 18776758 intron ftz-f1 - chr3L 18781109 intron ftz-f1 - chr3L_6_18775001 chr3L_18775001 RAL-318 912 chr3L 18810148 18810178 chr3L 18810225 18810255 4 77 1.5 0.5 1.0 2.0 107 chr3L 18810148 intron CG14073 - chr3L 18810202 intron CG14073 - chr3L 18810255 intron CG14073 - chr3L_4_18810001 chr3L_18810001 RAL-318 913 chr3L 18819001 18819012 chr3L 18819090 18819102 5 90 4.5 3.0 3.8 1.0 101 chr3L 18819001 intron CG14073 - chr3L 18819052 intron CG14073 - chr3L 18819102 intron CG14073 - chr3L_5_18815001 chr3L_18815001 RAL-318 914 chr3L 18839735 18839767 chr3L 18839818 18839850 4 83 1.5 2.0 1.8 1.4 115 chr3L 18839735 intron Indy - chr3L 18839792 intron Indy - chr3L 18839850 intron Indy - chr3L_4_18835001 chr3L_18835001 RAL-318 915 chr3L 18857761 18857791 chr3L 18857888 18857918 10 126 0.5 2.5 1.5 4.0 157 chr3L 18857761 intergenic CR45388 + chr3L 18857840 intergenic CR45388 + chr3L 18857918 intergenic CR45388 + chr3L_10_18855001 chr3L_18855001 RAL-318 916 chr3L 18933628 18933635 chr3L 18933722 18933728 4 94 1.5 0.5 1.0 2.0 100 chr3L 18933628 intron CG32204 - chr3L 18933678 intron CG32204 - chr3L 18933728 intron CG32204 - chr3L_4_18930001 chr3L_18930001 RAL-318 917 chr3L 18935835 18935856 chr3L 18935923 18935923 4 83 0.5 1.5 1.0 2.0 88 chr3L 18935835 intron CG32204 - chr3L 18935879 intron CG32204 - chr3L 18935923 intron CG32204 - chr3L_4_18935001 chr3L_18935001 RAL-318 918 chr3L 19008840 19008876 chr3L 19009177 19009188 jockey 13 334 2.0 2.5 2.2 4.1 348 chr3L 19008840 intron nkd - chr3L 19009014 intron nkd - chr3L 19009188 intron nkd - chr3L_13_19005001 chr3L_19005001 RAL-318 919 chr3L 19029457 19029469 chr3L 19029557 19029571 5 100 3.0 5.5 4.2 1.0 114 chr3L 19029457 intron nkd - chr3L 19029514 intron nkd - chr3L 19029571 intron nkd - chr3L_5_19025001 chr3L_19025001 RAL-318 920 chr3L 19029473 19029480 chr3L 19029552 19029582 5 93 0.5 5.0 2.8 1.3 109 chr3L 19029473 intron nkd - chr3L 19029528 intron nkd - chr3L 19029582 intron nkd - chr3L_5_19025001 chr3L_19025001 RAL-318 921 chr3L 19115637 19115669 chr3L 19115815 19115849 BS 7 179 4.5 1.0 2.8 1.8 212 chr3L 19115637 intron CG14082 - chr3L 19115743 intron CG14082 - chr3L 19115849 intron CG14082 - chr3L_7_19115001 chr3L_19115001 RAL-318 922 chr3L 19117041 19117064 chr3L 19124488 19124511 mdg1 10 7447 5.0 4.0 4.5 1.8 7470 chr3L 19117041 intron CG14082 - chr3L 19120776 intron CG14082 - chr3L 19124511 intron CG14082 - chr3L_10_19120001 chr3L_19120001 RAL-318 923 chr3L 19117065 19117076 chr3L 19124487 19124523 mdg1 4 7436 4.0 4.0 4.0 0.8 7458 chr3L 19117065 intron CG14082 - chr3L 19120794 intron CG14082 - chr3L 19124523 intron CG14082 - chr3L_4_19120001 chr3L_19120001 RAL-318 924 chr3L 19182395 19182417 chr3L 19182475 19182498 6 80 1.5 2.5 2.0 2.0 103 chr3L 19182395 intron fz2 - chr3L 19182446 intron fz2 - chr3L 19182498 intron fz2 - chr3L_6_19180001 chr3L_19180001 RAL-318 925 chr3L 19269817 19269848 chr3L 19270019 19270027 12 200 1.0 4.5 2.8 3.2 210 chr3L 19269817 intron,exon CG14085 +,CG14088 - chr3L 19269922 intron,exon CG14085 +,CG14088 - chr3L 19270027 intron,exon CG14085 +,CG14088 - chr3L_12_19265001 chr3L_19265001 RAL-318 926 chr3L 19462027 19462044 chr3L 19462142 19462159 7 114 3.5 1.5 2.5 2.0 132 chr3L 19462027 intergenic not near genes chr3L 19462093 intergenic not near genes chr3L 19462159 intergenic not near genes chr3L_7_19460001 chr3L_19460001 RAL-318 927 chr3L 19527924 19527953 chr3L 19528003 19528031 5 79 4.5 2.5 3.5 1.1 107 chr3L 19527924 intergenic not near genes chr3L 19527978 intergenic not near genes chr3L 19528031 intergenic not near genes chr3L_5_19525001 chr3L_19525001 RAL-318 928 chr3L 19861826 19861853 chr3L 19863608 19863640 S-element 9 1785 1.5 4.0 2.8 2.4 1814 chr3L 19861826 5` UTR CR45433 + chr3L 19862733 intergenic not near genes chr3L 19863640 intergenic not near genes chr3L_9_19860001 chr3L_19860001 RAL-318 929 chr3L 19981213 19981222 chr3L 19981291 19981302 4 79 3.5 1.0 2.2 1.2 89 chr3L 19981213 intergenic CG17732 + chr3L 19981258 intergenic CG17732 + chr3L 19981302 intergenic CG17732 + chr3L_4_19980001 chr3L_19980001 RAL-318 930 chr3L 20038822 20038851 chr3L 20038994 20039024 4 174 1.0 2.5 1.8 1.4 202 chr3L 20038822 intergenic not near genes chr3L 20038923 intergenic not near genes chr3L 20039024 intergenic not near genes chr3L_4_20035001 chr3L_20035001 RAL-318 931 chr3L 20081751 20081767 chr3L 20081834 20081849 5 83 3.0 1.5 2.2 1.6 98 chr3L 20081751 intron sNPF-R - chr3L 20081800 intron sNPF-R - chr3L 20081849 intron sNPF-R - chr3L_5_20080001 chr3L_20080001 RAL-318 932 chr3L 20143087 20143112 chr3L 20143167 20143192 9 80 2.0 4.0 3.0 2.2 105 chr3L 20143087 intergenic not near genes chr3L 20143140 intergenic not near genes chr3L 20143192 intergenic not near genes chr3L_9_20140001 chr3L_20140001 RAL-318 933 chr3L 20570777 20570796 chr3L 20570855 20570855 5 74 1.0 1.0 1.0 2.5 78 chr3L 20570777 intergenic not near genes chr3L 20570816 intergenic not near genes chr3L 20570855 intergenic not near genes chr3L_5_20570001 chr3L_20570001 RAL-318 934 chr3L 20733810 20733840 chr3L 20733896 20733923 8 85 0.0 4.5 2.2 2.5 113 chr3L 20733810 intron CG13252 + chr3L 20733866 intron CG13252 + chr3L 20733923 intron CG13252 + chr3L_8_20730001 chr3L_20730001 RAL-318 935 chr3L 20821283 20821308 chr3L 20824894 20824918 NOF 6 3610 0.0 1.5 0.8 3.3 3635 chr3L 20821283 intron Pka-R1 + chr3L 20823100 intron Pka-R1 + chr3L 20824918 intron Pka-R1 + chr3L_6_20820001 chr3L_20820001 RAL-318 936 chr3L 20849270 20849297 chr3L 20849349 20849376 5 79 1.5 2.0 1.8 1.8 106 chr3L 20849270 intron CG32432 - chr3L 20849323 intron CG32432 - chr3L 20849376 intron CG32432 - chr3L_5_20845001 chr3L_20845001 RAL-318 937 chr3L 20863606 20863624 chr3L 20863797 20863814 8 191 2.0 3.0 2.5 2.3 208 chr3L 20863606 intron CG32432 - chr3L 20863710 intron CG32432 - chr3L 20863814 intron CG32432 - chr3L_8_20860001 chr3L_20860001 RAL-318 938 chr3L 20890497 20890523 chr3L 20890572 20890598 4 70 3.0 6.0 4.5 0.7 101 chr3L 20890497 intergenic not near genes chr3L 20890548 intergenic not near genes chr3L 20890598 intergenic not near genes chr3L_4_20890001 chr3L_20890001 RAL-318 939 chr3L 20917089 20917119 chr3L 20917165 20917196 9 74 1.5 2.5 2.0 3.0 107 chr3L 20917089 intergenic not near genes chr3L 20917142 intergenic not near genes chr3L 20917196 intergenic not near genes chr3L_9_20915001 chr3L_20915001 RAL-318 940 chr3L 20950946 20950981 chr3L 20951130 20951165 10 180 3.5 2.0 2.8 2.6 219 chr3L 20950946 intergenic CR45243 - chr3L 20951056 intergenic CR45243 - chr3L 20951165 intergenic CR45243 - chr3L_10_20950001 chr3L_20950001 RAL-318 941 chr3L 20964616 20964642 chr3L 20964693 20964716 7 76 5.0 4.0 4.5 1.3 100 chr3L 20964616 3` UTR CG12983 - chr3L 20964666 3` UTR CG12983 - chr3L 20964716 3` UTR CG12983 - chr3L_7_20960001 chr3L_20960001 RAL-318 942 chr3L 20977428 20977442 chr3L 20977535 20977568 5 121 4.0 1.0 2.5 1.4 140 chr3L 20977428 intergenic not near genes chr3L 20977498 intergenic not near genes chr3L 20977568 intergenic not near genes chr3L_5_20975001 chr3L_20975001 RAL-318 943 chr3L 21010378 21010396 chr3L 21010484 21010502 5 106 1.5 1.5 1.5 2.0 124 chr3L 21010378 intron skd - chr3L 21010440 intron skd - chr3L 21010502 intron skd - chr3L_5_21010001 chr3L_21010001 RAL-318 944 chr3L 21082210 21082233 chr3L 21082288 21082311 9 77 1.0 3.0 2.0 3.0 101 chr3L 21082210 intron ko - chr3L 21082260 intron ko - chr3L 21082311 intron ko - chr3L_9_21080001 chr3L_21080001 RAL-318 945 chr3L 21160961 21160993 chr3L 21161057 21161089 11 95 5.5 4.0 4.8 1.9 128 chr3L 21160961 5` UTR Ac78C - chr3L 21161025 intron Ac78C - chr3L 21161089 intron Ac78C - chr3L_11_21160001 chr3L_21160001 RAL-318 946 chr3L 21170055 21170087 chr3L 21170281 21170313 5 225 3.0 4.0 3.5 1.1 258 chr3L 21170055 intron Ac78C - chr3L 21170184 intron Ac78C - chr3L 21170313 intron Ac78C - chr3L_5_21170001 chr3L_21170001 RAL-318 947 chr3L 21243751 21243774 chr3L 21251314 21251328 412 12 7560 3.5 5.0 4.2 2.3 7577 chr3L 21243751 intron Eip78C + chr3L 21247540 intron Eip78C + chr3L 21251328 intron Eip78C + chr3L_12_21245001 chr3L_21245001 RAL-318 948 chr3L 21274208 21274237 chr3L 21274377 21274408 12 166 1.0 2.5 1.8 4.3 200 chr3L 21274208 intron AcCoAS - chr3L 21274308 intron AcCoAS - chr3L 21274408 intron AcCoAS - chr3L_12_21270001 chr3L_21270001 RAL-318 949 chr3L 21415143 21415165 chr3L 21415225 21415248 10 82 1.5 6.0 3.8 2.1 105 chr3L 21415143 intron rgn + chr3L 21415196 intron rgn + chr3L 21415248 intron rgn + chr3L_10_21415001 chr3L_21415001 RAL-318 950 chr3L 21498833 21498864 chr3L 21500468 21500499 1360 5 1635 5.0 5.0 5.0 0.8 1666 chr3L 21498833 intron Glg1 - chr3L 21499666 intron Glg1 - chr3L 21500499 intron Glg1 - chr3L_5_21495001 chr3L_21495001 RAL-318 951 chr3L 21767039 21767065 chr3L 21767120 21767146 6 81 2.0 1.5 1.8 2.1 107 chr3L 21767039 intron Syn1 - chr3L 21767092 intron Syn1 - chr3L 21767146 intron Syn1 - chr3L_6_21765001 chr3L_21765001 RAL-318 952 chr3L 21776677 21776701 chr3L 21776764 21776788 6 86 0.5 2.5 1.5 2.4 111 chr3L 21776677 intron,intron CG42689 +,CG42552 + chr3L 21776732 intron,intron CG42689 +,CG42552 + chr3L 21776788 intron,intron CG42689 +,CG42552 + chr3L_6_21775001 chr3L_21775001 RAL-318 953 chr3L 21799940 21799965 chr3L 21800025 21800050 7 85 1.5 5.0 3.2 1.7 110 chr3L 21799940 intergenic not near genes chr3L 21799995 intergenic not near genes chr3L 21800050 intergenic not near genes chr3L_7_21795001 chr3L_21795001 RAL-318 954 chr3L 21845205 21845235 chr3L 21845344 21845376 10 141 2.0 1.5 1.8 3.6 171 chr3L 21845205 5` UTR mub + chr3L 21845290 intron mub + chr3L 21845376 intron mub + chr3L_10_21845001 chr3L_21845001 RAL-318 955 chr3L 21872425 21872454 chr3L 21872502 21872533 5 78 1.0 2.0 1.5 2.0 108 chr3L 21872425 intron mub + chr3L 21872479 intron mub + chr3L 21872533 intron mub + chr3L_5_21870001 chr3L_21870001 RAL-318 956 chr3L 21927180 21927205 chr3L 21927266 21927291 4 86 2.0 1.5 1.8 1.4 111 chr3L 21927180 3` UTR mub + chr3L 21927236 3` UTR mub + chr3L 21927291 3` UTR mub + chr3L_4_21925001 chr3L_21925001 RAL-318 957 chr3L 21994442 21994465 chr3L 21994523 21994546 4 81 0.5 1.5 1.0 2.0 104 chr3L 21994442 intergenic not near genes chr3L 21994494 intergenic not near genes chr3L 21994546 intergenic not near genes chr3L_4_21990001 chr3L_21990001 RAL-318 958 chr3L 22016386 22016401 chr3L 22016486 22016509 6 105 4.5 2.0 3.2 1.4 123 chr3L 22016386 intergenic not near genes chr3L 22016448 intergenic not near genes chr3L 22016509 intergenic not near genes chr3L_6_22015001 chr3L_22015001 RAL-318 959 chr3L 22033700 22033722 chr3L 22033778 22033800 6 78 0.5 2.5 1.5 2.4 100 chr3L 22033700 intergenic not near genes chr3L 22033750 intergenic not near genes chr3L 22033800 intergenic not near genes chr3L_6_22030001 chr3L_22030001 RAL-318 960 chr3L 22046181 22046203 chr3L 22046284 22046306 6 103 5.0 3.0 4.0 1.2 125 chr3L 22046181 intron Oct-TyrR + chr3L 22046244 intron Oct-TyrR + chr3L 22046306 intron Oct-TyrR + chr3L_6_22045001 chr3L_22045001 RAL-318 961 chr3L 22099677 22099707 chr3L 22105863 22105893 3S18 5 6182 0.5 3.0 1.8 1.8 6216 chr3L 22099677 intergenic not near genes chr3L 22102785 intergenic not near genes chr3L 22105893 intergenic not near genes chr3L_5_22100001 chr3L_22100001 RAL-318 962 chr3L 22137658 22137687 chr3L 22137745 22137774 8 85 1.5 3.0 2.2 2.5 116 chr3L 22137658 intron olf413 + chr3L 22137716 intron olf413 + chr3L 22137774 intron olf413 + chr3L_8_22135001 chr3L_22135001 RAL-318 963 chr3L 22328077 22328085 chr3L 22328162 22328177 4 91 1.5 3.0 2.2 1.2 100 chr3L 22328077 intron Ten-m - chr3L 22328127 intron Ten-m - chr3L 22328177 intron Ten-m - chr3L_4_22325001 chr3L_22325001 RAL-318 964 chr3L 22411382 22411396 chr3L 22411446 22411455 4 69 2.5 1.5 2.0 1.3 73 chr3L 22411382 intergenic not near genes chr3L 22411418 intergenic not near genes chr3L 22411455 intergenic not near genes chr3L_4_22410001 chr3L_22410001 RAL-318 965 chr3L 22447196 22447228 chr3L 22447287 22447319 7 90 3.0 1.5 2.2 2.2 123 chr3L 22447196 intergenic not near genes chr3L 22447258 intergenic not near genes chr3L 22447319 intergenic not near genes chr3L_7_22445001 chr3L_22445001 RAL-318 966 chr3L 22507143 22507153 chr3L 22507208 22507214 5 77 2.5 1.5 2.0 1.7 71 chr3L 22507143 intergenic not near genes chr3L 22507178 intergenic not near genes chr3L 22507214 intergenic not near genes chr3L_5_22505001 chr3L_22505001 RAL-318 967 chr3L 22555784 22555802 chr3L 22563238 22563272 blood 4 7460 2.5 3.0 2.8 1.1 7488 chr3L 22555784 intergenic not near genes chr3L 22559528 intergenic not near genes chr3L 22563272 intergenic not near genes chr3L_4_22555001 chr3L_22555001 RAL-318 968 chr3L 22570426 22570454 chr3L 22570570 22570595 10 143 4.0 2.5 3.2 2.4 169 chr3L 22570426 intergenic not near genes chr3L 22570510 intergenic not near genes chr3L 22570595 intergenic not near genes chr3L_10_22570001 chr3L_22570001 RAL-318 969 chr3L 22577624 22577640 chr3L 22582411 22582428 Doc 4 4786 2.5 4.5 3.5 0.9 4804 chr3L 22577624 intergenic not near genes chr3L 22580026 intergenic not near genes chr3L 22582428 3` UTR CG14459 - chr3L_4_22580001 chr3L_22580001 RAL-318 970 chr3L 22617190 22617215 chr3L 22624641 22624667 blood 6 7452 2.5 1.0 1.8 2.1 7477 chr3L 22617190 intron CG14459 - chr3L 22620928 intron CG14459 - chr3L 22624667 intron CG14459 - chr3L_6_22620001 chr3L_22620001 RAL-318 971 chr3L 22821933 22821956 chr3L 22822013 22822034 5 79 1.0 0.5 0.8 2.8 101 chr3L 22821933 intron jim - chr3L 22821984 intron jim - chr3L 22822034 intron jim - chr3L_5_22820001 chr3L_22820001 RAL-318 972 chr3L 22838601 22838619 chr3L 22838665 22838700 4 77 3.5 2.0 2.8 1.1 99 chr3L 22838601 intergenic CG11226 + chr3L 22838650 intergenic CG11226 + chr3L 22838700 intergenic not near genes chr3L_4_22835001 chr3L_22835001 RAL-318 973 chr3L 22853461 22853715 chr3L 22853548 22853801 21 84 1.0 3.0 2.0 7.0 340 chr3L 22853461 5` UTR,5` UTR CR43426 +,CG32462 - chr3L 22853631 5` UTR CR43426 + chr3L 22853801 5` UTR CR43426 + chr3L_21_22850001 chr3L_22850001 RAL-318 974 chr3L 22865980 22866013 chr3L 22867113 22867146 Doc 5 1133 1.5 3.0 2.2 1.6 1166 chr3L 22865980 intron CG33170 + chr3L 22866563 intron CG33170 + chr3L 22867146 intron CG33170 + chr3L_5_22865001 chr3L_22865001 RAL-318 975 chr3L 9102748 9102766 chr3L 22908067 22908067 4 13805312 22.5 14.5 18.5 0.2 13805319 chr3L 9102748 exon bol - chr3L 16005408 exon mRpS31 + chr3L 22908067 intergenic not near genes chr3L_4_16005001 chr3L_16005001 RAL-318 976 chr3L 22909023 22909054 chr3L 22909112 22909145 13 88 3.5 3.0 3.2 3.1 122 chr3L 22909023 intergenic CR45661 + chr3L 22909084 intergenic CR45661 + chr3L 22909145 intergenic CR45661 + chr3L_13_22905001 chr3L_22905001 RAL-318 977 chr3L 22974360 22974394 chr3L 22974439 22974472 8 73 3.5 2.5 3.0 2.0 112 chr3L 22974360 intergenic not near genes chr3L 22974416 intergenic not near genes chr3L 22974472 intergenic not near genes chr3L_8_22970001 chr3L_22970001 RAL-318 978 chr3L 22975259 22975282 chr3L 22975349 22975373 9 89 1.0 1.0 1.0 4.5 114 chr3L 22975259 intergenic not near genes chr3L 22975316 intergenic not near genes chr3L 22975373 intergenic not near genes chr3L_9_22975001 chr3L_22975001 RAL-318 979 chr3L 23004910 23004932 chr3L 23005236 23005258 5 326 3.0 7.0 5.0 0.8 348 chr3L 23004910 intron nrm + chr3L 23005084 intron nrm + chr3L 23005258 intron nrm + chr3L_5_23005001 chr3L_23005001 RAL-318 980 chr3L 23875526 23875549 chr3L 23875606 23875630 6 78 5.5 1.0 3.2 1.4 104 chr3L 23875526 intron CG40470 - chr3L 23875578 intron CG40470 - chr3L 23875630 intron CG40470 - chr3L_6_23875001 chr3L_23875001 RAL-318 981 chr3L 23940863 23940890 chr3L 23940943 23940970 5 80 1.5 1.5 1.5 2.0 107 chr3L 23940863 intron CG40470 - chr3L 23940916 intron CG40470 - chr3L 23940970 intron CG40470 - chr3L_5_23940001 chr3L_23940001 RAL-318 982 chr3L 24021283 24021306 chr3L 24022440 24022463 1360 4 1152 3.0 0.0 1.5 1.6 1180 chr3L 24021283 intergenic not near genes chr3L 24021873 intergenic not near genes chr3L 24022463 intergenic not near genes chr3L_4_24020001 chr3L_24020001 RAL-318 983 chr3L 24084500 24084520 chr3L 24084572 24084574 5 74 2.0 1.5 1.8 1.8 74 chr3L 24084500 intron Snap25 + chr3L 24084537 intron Snap25 + chr3L 24084574 intron Snap25 + chr3L_5_24080001 chr3L_24080001 RAL-318 984 chr3L 24363241 24363273 chr3L 24363317 24363351 6 77 2.0 3.5 2.8 1.6 110 chr3L 24363241 intron nvd + chr3L 24363296 intron nvd + chr3L 24363351 intron nvd + chr3L_6_24360001 chr3L_24360001 RAL-318 985 chr3L 25464022 25464098 chr3L 25464109 25464195 12 83 2.0 0.5 1.2 5.5 173 chr3L 25464022 intergenic not near genes chr3L 25464108 intergenic not near genes chr3L 25464195 intergenic not near genes chr3L_12_25460001 chr3L_25460001 RAL-318 986 chr3L 25513595 25513605 chr3L 25513671 25513684 4 78 2.0 4.0 3.0 1.0 89 chr3L 25513595 intron CG41343 - chr3L 25513640 intron CG41343 - chr3L 25513684 intron CG41343 - chr3L_4_25510001 chr3L_25510001 RAL-318 987 chr3L 25709268 25709281 chr3L 25709403 25709416 5 135 2.5 2.5 2.5 1.4 148 chr3L 25709268 intergenic CR45180 + chr3L 25709342 intergenic CR45180 + chr3L 25709416 intergenic CR45180 + chr3L_5_25705001 chr3L_25705001 RAL-318 988 chr3L 25842479 25842498 chr3L 25842561 25842583 7 85 2.5 2.0 2.2 2.2 104 chr3L 25842479 intron CG40178 - chr3L 25842531 intron CG40178 - chr3L 25842583 intron CG40178 - chr3L_7_25840001 chr3L_25840001 RAL-318 989 chr3L 24948769 24948772 chr3L 25934972 25934977 diver2 4 986204 18.0 14.0 16.0 0.2 986208 chr3L 24948769 intergenic not near genes chr3L 25441873 intergenic not near genes chr3L 25934977 intron CG40178 - chr3L_4_25440001 chr3L_25440001 RAL-318 990 chr3L 27167945 27167983 chr3L 27168065 27168103 12 114 1.5 2.5 2.0 4.0 158 chr3L 27167945 intergenic not near genes chr3L 27168024 intergenic not near genes chr3L 27168103 intergenic not near genes chr3L_12_27165001 chr3L_27165001 RAL-318 991 chr3L 27284248 27284272 chr3L 27284353 27284371 9 102 7.5 4.0 5.8 1.3 123 chr3L 27284248 intron Dbp80 + chr3L 27284310 intron Dbp80 + chr3L 27284371 intron Dbp80 + chr3L_9_27280001 chr3L_27280001 RAL-318 992 chr3L 27368877 27368907 chr3L 27369422 27369435 4 541 1.0 0.0 0.5 2.7 558 chr3L 27368877 intron Dbp80 + chr3L 27369156 intron Dbp80 + chr3L 27369435 intron Dbp80 + chr3L_4_27365001 chr3L_27365001 RAL-318 993 chr3L 27390690 27390711 chr3L 27390768 27390790 10 76 36.0 41.0 38.5 0.3 100 chr3L 27390690 intron Dbp80 + chr3L 27390740 intron Dbp80 + chr3L 27390790 intron Dbp80 + chr3L_10_27390001 chr3L_27390001 RAL-318 994 chr3R 3267248 3267248 chr3R 3267429 3267445 7 183 13.0 16.5 14.8 0.4 197 chr3R 3267248 intergenic not near genes chr3R 3267346 intergenic not near genes chr3R 3267445 intergenic not near genes chr3R_7_3265001 chr3R_3265001 RAL-318 995 chr3R 3752747 3752758 chr3R 3752830 3752840 7 82 4.5 1.5 3.0 1.8 93 chr3R 3752747 intergenic CG41128 + chr3R 3752794 intergenic CG41128 + chr3R 3752840 intergenic CG41128 + chr3R_7_3750001 chr3R_3750001 RAL-318 996 chr3R 4063813 4063824 chr3R 4069093 4069104 4 5280 7.0 10.5 8.8 0.4 5291 chr3R 4063813 intergenic not near genes chr3R 4066458 intergenic not near genes chr3R 4069104 intergenic not near genes chr3R_4_4065001 chr3R_4065001 RAL-318 997 chr3R 4408411 4408445 chr3R 4412715 4412749 Juan 5 4304 2.0 2.5 2.2 1.6 4338 chr3R 4408411 intron CG32944 - chr3R 4410580 intron CG32944 - chr3R 4412749 intron CG32944 - chr3R_5_4410001 chr3R_4410001 RAL-318 998 chr3R 4625322 4625338 chr3R 4625702 4625709 8 382 7.0 4.0 5.5 1.2 387 chr3R 4625322 intron 5-HT2A + chr3R 4625516 intron 5-HT2A + chr3R 4625709 intron 5-HT2A + chr3R_8_4625001 chr3R_4625001 RAL-318 999 chr3R 4753240 4753279 chr3R 4757543 4757565 F-element 11 4300 2.5 3.5 3.0 2.8 4325 chr3R 4753240 intron,intron atms +,CG44098 - chr3R 4755402 intron,intron atms +,CG44098 - chr3R 4757565 intron,exon atms +,CG44098 - chr3R_11_4755001 chr3R_4755001 RAL-318 1000 chr3R 4887485 4887509 chr3R 4894861 4894883 rover 6 7376 3.5 6.5 5.0 1.0 7398 chr3R 4887485 intergenic not near genes chr3R 4891184 intergenic not near genes chr3R 4894883 intergenic not near genes chr3R_6_4890001 chr3R_4890001 RAL-318 1001 chr3R 4905036 4905050 chr3R 4905170 4905185 8 134 5.0 2.0 3.5 1.8 149 chr3R 4905036 intergenic not near genes chr3R 4905110 intergenic not near genes chr3R 4905185 intergenic not near genes chr3R_8_4905001 chr3R_4905001 RAL-318 1002 chr3R 4922342 4922362 chr3R 4922421 4922441 7 77 2.5 3.5 3.0 1.8 99 chr3R 4922342 intron Cdep + chr3R 4922392 intron Cdep + chr3R 4922441 intron Cdep + chr3R_7_4920001 chr3R_4920001 RAL-318 1003 chr3R 4991500 4991522 chr3R 4992049 4992068 8 548 3.5 5.5 4.5 1.5 568 chr3R 4991500 intron CG2022 - chr3R 4991784 intron CG2022 - chr3R 4992068 intron CG2022 - chr3R_8_4990001 chr3R_4990001 RAL-318 1004 chr3R 5045847 5045871 chr3R 5052949 5052973 HMS-Beagle 6 7102 1.5 2.5 2.0 2.0 7126 chr3R 5045847 intron CR43635 - chr3R 5049410 intergenic not near genes chr3R 5052973 intergenic CR45588 - chr3R_6_5045001 chr3R_5045001 RAL-318 1005 chr3R 5067985 5068011 chr3R 5073502 5073528 mdg3 7 5517 3.0 0.5 1.8 2.5 5543 chr3R 5067985 intergenic not near genes chr3R 5070756 intergenic not near genes chr3R 5073528 intergenic not near genes chr3R_7_5070001 chr3R_5070001 RAL-318 1006 chr3R 5112699 5112721 chr3R 5112765 5112776 7 69 1.5 2.0 1.8 2.5 77 chr3R 5112699 intergenic not near genes chr3R 5112738 intergenic not near genes chr3R 5112776 intergenic not near genes chr3R_7_5110001 chr3R_5110001 RAL-318 1007 chr3R 5131358 5131375 chr3R 5131420 5131454 8 73 2.0 3.0 2.5 2.3 96 chr3R 5131358 intergenic not near genes chr3R 5131406 intergenic not near genes chr3R 5131454 intergenic not near genes chr3R_8_5130001 chr3R_5130001 RAL-318 1008 chr3R 5143190 5143202 chr3R 5143342 5143349 5 150 4.5 2.0 3.2 1.2 159 chr3R 5143190 intergenic not near genes chr3R 5143270 intergenic not near genes chr3R 5143349 intergenic not near genes chr3R_5_5140001 chr3R_5140001 RAL-318 1009 chr3R 5278096 5278118 chr3R 5278172 5278174 12 74 5.5 2.0 3.8 2.5 78 chr3R 5278096 intron mtd - chr3R 5278135 intron mtd - chr3R 5278174 intron mtd - chr3R_12_5275001 chr3R_5275001 RAL-318 1010 chr3R 5289250 5289283 chr3R 5289340 5289372 8 90 0.5 1.5 1.0 4.0 122 chr3R 5289250 intron mtd - chr3R 5289311 intron mtd - chr3R 5289372 intron mtd - chr3R_8_5285001 chr3R_5285001 RAL-318 1011 chr3R 5338397 5338423 chr3R 5343574 5343597 Rt1c 7 5176 3.5 8.0 5.8 1.0 5200 chr3R 5338397 intron mtd - chr3R 5340997 intron mtd - chr3R 5343597 intron mtd - chr3R_7_5340001 chr3R_5340001 RAL-318 1012 chr3R 5385149 5385174 chr3R 5385329 5385349 8 177 3.5 4.5 4.0 1.6 200 chr3R 5385149 exon kkv - chr3R 5385249 intron kkv - chr3R 5385349 intron kkv - chr3R_8_5385001 chr3R_5385001 RAL-318 1013 chr3R 5502607 5502609 chr3R 5502683 5502688 5 77 1.5 6.0 3.8 1.0 81 chr3R 5502607 5` UTR CG31547 - chr3R 5502648 5` UTR CG31547 - chr3R 5502688 5` UTR CG31547 - chr3R_5_5500001 chr3R_5500001 RAL-318 1014 chr3R 5712094 5712113 chr3R 5712178 5712201 4 87 0.0 2.5 1.2 1.8 107 chr3R 5712094 3` UTR plx + chr3R 5712148 3` UTR plx + chr3R 5712201 3` UTR plx + chr3R_4_5710001 chr3R_5710001 RAL-318 1015 chr3R 5746014 5746046 chr3R 5746255 5746287 pogo 11 238 2.5 2.5 2.5 3.1 273 chr3R 5746014 3` UTR Madm + chr3R 5746150 3` UTR Madm + chr3R 5746287 3` UTR Madm + chr3R_11_5745001 chr3R_5745001 RAL-318 1016 chr3R 5765636 5765656 chr3R 5765712 5765740 4 82 3.5 2.5 3.0 1.0 104 chr3R 5765636 intron CG2082 - chr3R 5765688 intron CG2082 - chr3R 5765740 intron CG2082 - chr3R_4_5765001 chr3R_5765001 RAL-318 1017 chr3R 5809125 5809127 chr3R 5809360 5809368 pogo 4 238 4.0 4.0 4.0 0.8 243 chr3R 5809125 3` UTR CG11000 + chr3R 5809246 3` UTR CG11000 + chr3R 5809368 3` UTR CG11000 + chr3R_4_5805001 chr3R_5805001 RAL-318 1018 chr3R 5809128 5809144 chr3R 5809358 5809385 pogo 7 238 2.5 4.0 3.2 1.7 257 chr3R 5809128 3` UTR CG11000 + chr3R 5809256 3` UTR CG11000 + chr3R 5809385 3` UTR CG11000 + chr3R_7_5805001 chr3R_5805001 RAL-318 1019 chr3R 5927579 5927589 chr3R 5927819 5927829 pogo 4 240 3.5 7.5 5.5 0.6 250 chr3R 5927579 intron CG34113 - chr3R 5927704 intron CG34113 - chr3R 5927829 intron CG34113 - chr3R_4_5925001 chr3R_5925001 RAL-318 1020 chr3R 6015960 6015985 chr3R 6024441 6024456 Tirant 8 8478 3.0 4.5 3.8 1.7 8496 chr3R 6015960 intergenic not near genes chr3R 6020208 intergenic not near genes chr3R 6024456 intergenic not near genes chr3R_8_6020001 chr3R_6020001 RAL-318 1021 chr3R 6059867 6059899 chr3R 6059953 6059983 7 81 2.5 4.5 3.5 1.6 116 chr3R 6059867 intergenic not near genes chr3R 6059925 intergenic not near genes chr3R 6059983 intergenic not near genes chr3R_7_6055001 chr3R_6055001 RAL-318 1022 chr3R 6080154 6080185 chr3R 6080241 6080276 6 87 2.0 1.0 1.5 2.4 122 chr3R 6080154 intergenic not near genes chr3R 6080215 intergenic not near genes chr3R 6080276 intergenic not near genes chr3R_6_6080001 chr3R_6080001 RAL-318 1023 chr3R 6158510 6158540 chr3R 6167093 6167123 Tirant 9 8582 4.0 4.0 4.0 1.8 8613 chr3R 6158510 intergenic not near genes chr3R 6162816 intergenic not near genes chr3R 6167123 intergenic CG1077 + chr3R_9_6160001 chr3R_6160001 RAL-318 1024 chr3R 6175176 6175194 chr3R 6182448 6182466 HMS-Beagle2 4 7272 2.5 2.0 2.2 1.2 7290 chr3R 6175176 intergenic Osi1 + chr3R 6178821 intron CR45194 + chr3R 6182466 intergenic CR45194 + chr3R_4_6175001 chr3R_6175001 RAL-318 1025 chr3R 6191175 6191198 chr3R 6191255 6191278 7 80 3.0 2.5 2.8 1.8 103 chr3R 6191175 intron NPFR + chr3R 6191226 intron NPFR + chr3R 6191278 intron NPFR + chr3R_7_6190001 chr3R_6190001 RAL-318 1026 chr3R 6553025 6553053 chr3R 6553091 6553094 9 71 4.5 5.0 4.8 1.6 69 chr3R 6553025 intron dpr11 - chr3R 6553060 intron dpr11 - chr3R 6553094 intron dpr11 - chr3R_9_6550001 chr3R_6550001 RAL-318 1027 chr3R 6560761 6560787 chr3R 6560890 6560919 7 130 2.0 3.0 2.5 2.0 158 chr3R 6560761 intron dpr11 - chr3R 6560840 intron dpr11 - chr3R 6560919 intron dpr11 - chr3R_7_6560001 chr3R_6560001 RAL-318 1028 chr3R 6616871 6616892 chr3R 6616948 6616969 8 76 3.0 3.5 3.2 1.9 98 chr3R 6616871 intergenic not near genes chr3R 6616920 intergenic not near genes chr3R 6616969 intergenic not near genes chr3R_8_6615001 chr3R_6615001 RAL-318 1029 chr3R 6639910 6639933 chr3R 6639988 6640010 11 74 1.5 0.0 0.8 6.1 100 chr3R 6639910 intergenic not near genes chr3R 6639960 intergenic not near genes chr3R 6640010 intergenic not near genes chr3R_11_6635001 chr3R_6635001 RAL-318 1030 chr3R 6737518 6737532 chr3R 6739287 6739319 Doc 6 1783 2.5 3.0 2.8 1.6 1801 chr3R 6737518 intron pb - chr3R 6738418 intron pb - chr3R 6739319 intron pb - chr3R_6_6735001 chr3R_6735001 RAL-318 1031 chr3R 6773753 6773782 chr3R 6773834 6773856 10 76 2.0 3.5 2.8 2.6 103 chr3R 6773753 intron CR42721 + chr3R 6773804 intron CR42721 + chr3R 6773856 intron CR42721 + chr3R_10_6770001 chr3R_6770001 RAL-318 1032 chr3R 6812076 6812108 chr3R 6812158 6812193 10 82 3.5 2.5 3.0 2.5 117 chr3R 6812076 intron CR42651 - chr3R 6812134 intron CR42651 - chr3R 6812193 intron CR42651 - chr3R_10_6810001 chr3R_6810001 RAL-318 1033 chr3R 6842779 6842813 chr3R 6842862 6842896 5 77 0.5 3.5 2.0 1.7 117 chr3R 6842779 intron Scr - chr3R 6842838 intron Scr - chr3R 6842896 intron Scr - chr3R_5_6840001 chr3R_6840001 RAL-318 1034 chr3R 6918062 6918092 chr3R 6918140 6918170 7 78 1.5 2.5 2.0 2.3 108 chr3R 6918062 intron Antp - chr3R 6918116 intron Antp - chr3R 6918170 intron Antp - chr3R_7_6915001 chr3R_6915001 RAL-318 1035 chr3R 6990462 6990493 chr3R 6990552 6990583 7 89 3.0 3.5 3.2 1.7 121 chr3R 6990462 intron Antp - chr3R 6990522 intron Antp - chr3R 6990583 intron Antp - chr3R_7_6990001 chr3R_6990001 RAL-318 1036 chr3R 6991177 6991205 chr3R 6991252 6991281 7 75 2.5 3.0 2.8 1.8 104 chr3R 6991177 intron Antp - chr3R 6991229 intron Antp - chr3R 6991281 intron Antp - chr3R_7_6990001 chr3R_6990001 RAL-318 1037 chr3R 7026863 7026887 chr3R 7026941 7026973 9 84 2.0 3.5 2.8 2.4 110 chr3R 7026863 intergenic not near genes chr3R 7026918 intergenic not near genes chr3R 7026973 intergenic not near genes chr3R_9_7025001 chr3R_7025001 RAL-318 1038 chr3R 7092781 7092814 chr3R 7093345 7093378 12 560 1.5 2.5 2.0 4.0 597 chr3R 7092781 3` UTR CR43685 - chr3R 7093080 intron CR43685 - chr3R 7093378 3` UTR CR43685 - chr3R_12_7090001 chr3R_7090001 RAL-318 1039 chr3R 7103286 7103320 chr3R 7103362 7103396 8 72 6.0 3.5 4.8 1.4 110 chr3R 7103286 intron Alh - chr3R 7103341 intron Alh - chr3R 7103396 intron Alh - chr3R_8_7100001 chr3R_7100001 RAL-318 1040 chr3R 7394207 7394229 chr3R 7400461 7400482 8 6257 21.5 20.5 21.0 0.4 6275 chr3R 7394207 intergenic not near genes chr3R 7397344 intergenic not near genes chr3R 7400482 intergenic not near genes chr3R_8_7395001 chr3R_7395001 RAL-318 1041 chr3R 7447991 7448012 chr3R 7448069 7448090 6 78 4.0 3.5 3.8 1.2 99 chr3R 7447991 intergenic not near genes chr3R 7448040 intergenic not near genes chr3R 7448090 intergenic not near genes chr3R_6_7445001 chr3R_7445001 RAL-318 1042 chr3R 7511765 7511796 chr3R 7511846 7511877 5 81 1.5 4.5 3.0 1.2 112 chr3R 7511765 intron alpha-Est8 - chr3R 7511821 intron alpha-Est8 - chr3R 7511877 intron alpha-Est8 - chr3R_5_7510001 chr3R_7510001 RAL-318 1043 chr3R 7526289 7526309 chr3R 7526371 7526391 6 82 2.0 1.0 1.5 2.4 102 chr3R 7526289 intron alpha-Est6 - chr3R 7526340 intron alpha-Est6 - chr3R 7526391 intron alpha-Est6 - chr3R_6_7525001 chr3R_7525001 RAL-318 1044 chr3R 7627195 7627213 chr3R 7627287 7627309 4 90 5.0 3.5 4.2 0.8 114 chr3R 7627195 intron,3` UTR CG34127 -,CR44332 - chr3R 7627252 intron,3` UTR CG34127 -,CR44332 - chr3R 7627309 intron CG34127 - chr3R_4_7625001 chr3R_7625001 RAL-318 1045 chr3R 7729465 7729499 chr3R 7737402 7737437 Stalker2 7 7937 0.5 1.0 0.8 3.9 7972 chr3R 7729465 intergenic not near genes chr3R 7733451 intergenic not near genes chr3R 7737437 intergenic not near genes chr3R_7_7730001 chr3R_7730001 RAL-318 1046 chr3R 7821715 7821748 chr3R 7821811 7821844 7 94 2.5 3.0 2.8 1.8 129 chr3R 7821715 intron CG34384 + chr3R 7821780 intron CG34384 + chr3R 7821844 intron CG34384 + chr3R_7_7820001 chr3R_7820001 RAL-318 1047 chr3R 7830301 7830331 chr3R 7830450 7830482 12 150 2.0 2.5 2.2 3.8 181 chr3R 7830301 intron CG34384 + chr3R 7830392 intron CG34384 + chr3R 7830482 intron CG34384 + chr3R_12_7830001 chr3R_7830001 RAL-318 1048 chr3R 7849644 7849668 chr3R 7850811 7850835 1360 5 1167 0.0 0.5 0.2 4.2 1191 chr3R 7849644 intron CG34384 + chr3R 7850240 intron CG34384 + chr3R 7850835 intron CG34384 + chr3R_5_7850001 chr3R_7850001 RAL-318 1049 chr3R 7951460 7951486 chr3R 7951559 7951585 5 97 3.5 2.5 3.0 1.2 125 chr3R 7951460 intron dsx - chr3R 7951522 intron dsx - chr3R 7951585 intron dsx - chr3R_5_7950001 chr3R_7950001 RAL-318 1050 chr3R 8033031 8033067 chr3R 8033120 8033155 5 88 2.0 2.0 2.0 1.7 124 chr3R 8033031 intergenic CG11035 -,unc-45 + chr3R 8033093 intergenic CG11035 -,unc-45 + chr3R 8033155 intergenic unc-45 +,CG11035 - chr3R_5_8030001 chr3R_8030001 RAL-318 1051 chr3R 8094409 8094440 chr3R 8099714 8099745 Transpac 7 5304 3.0 4.5 3.8 1.5 5336 chr3R 8094409 intron CG7900 + chr3R 8097077 intron CG7900 + chr3R 8099745 intron CG7900 + chr3R_7_8095001 chr3R_8095001 RAL-318 1052 chr3R 8101762 8101787 chr3R 8104846 8104871 G2 7 3084 4.0 2.0 3.0 1.8 3109 chr3R 8101762 exon CG7900 + chr3R 8103316 intron CG7900 + chr3R 8104871 3` UTR CG7900 + chr3R_7_8100001 chr3R_8100001 RAL-318 1053 chr3R 8207556 8207584 chr3R 8208401 8208429 F-element 5 844 5.0 4.5 4.8 0.9 873 chr3R 8207556 intergenic not near genes chr3R 8207992 intergenic not near genes chr3R 8208429 intergenic not near genes chr3R_5_8205001 chr3R_8205001 RAL-318 1054 chr3R 8255507 8255538 chr3R 8255596 8255607 12 85 3.0 1.0 2.0 4.0 100 chr3R 8255507 intron mtg + chr3R 8255557 intron mtg + chr3R 8255607 intron mtg + chr3R_12_8255001 chr3R_8255001 RAL-318 1055 chr3R 8273733 8273769 chr3R 8273820 8273856 6 86 1.0 2.0 1.5 2.4 123 chr3R 8273733 intergenic not near genes chr3R 8273794 intergenic not near genes chr3R 8273856 intergenic not near genes chr3R_6_8270001 chr3R_8270001 RAL-318 1056 chr3R 8310050 8310086 chr3R 8310168 8310205 14 115 3.0 5.0 4.0 2.8 155 chr3R 8310050 5` UTR CG11693 - chr3R 8310128 intron CG11693 - chr3R 8310205 intron CG11693 - chr3R_14_8310001 chr3R_8310001 RAL-318 1057 chr3R 8339246 8339247 chr3R 21907534 21907536 7 13568288 15.0 24.0 19.5 0.3 13568290 chr3R 8339246 intergenic not near genes chr3R 15123391 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_7_15120001 chr3R_15120001 RAL-318 1058 chr3R 8403026 8403040 chr3R 8412172 8412206 roo 6 9157 4.0 2.0 3.0 1.5 9180 chr3R 8403026 intron CG45263 - chr3R 8407616 intron CG45263 - chr3R 8412206 intron CG45263 - chr3R_6_8405001 chr3R_8405001 RAL-318 1059 chr3R 8534778 8534813 chr3R 8535035 8535070 6 257 3.0 2.5 2.8 1.6 292 chr3R 8534778 intergenic not near genes chr3R 8534924 intergenic not near genes chr3R 8535070 intergenic not near genes chr3R_6_8530001 chr3R_8530001 RAL-318 1060 chr3R 8570484 8570498 chr3R 8575149 8575155 HMS-Beagle 7 4664 3.5 3.5 3.5 1.6 4671 chr3R 8570484 intergenic not near genes chr3R 8572820 intergenic not near genes chr3R 8575155 intergenic not near genes chr3R_7_8570001 chr3R_8570001 RAL-318 1061 chr3R 8601765 8601798 chr3R 8610918 8610951 roo 10 9153 5.5 5.5 5.5 1.5 9186 chr3R 8601765 intron 5-HT2B + chr3R 8606358 intron 5-HT2B + chr3R 8610951 intron 5-HT2B + chr3R_10_8605001 chr3R_8605001 RAL-318 1062 chr3R 8614790 8614809 chr3R 8614988 8615011 7 199 0.0 5.0 2.5 2.0 221 chr3R 8614790 intron 5-HT2B + chr3R 8614900 intron 5-HT2B + chr3R 8615011 intron 5-HT2B + chr3R_7_8610001 chr3R_8610001 RAL-318 1063 chr3R 8707370 8707383 chr3R 8709811 8709824 jockey 8 2441 3.0 6.0 4.5 1.5 2454 chr3R 8707370 intergenic not near genes chr3R 8708597 intergenic not near genes chr3R 8709824 intergenic not near genes chr3R_8_8705001 chr3R_8705001 RAL-318 1064 chr3R 8917890 8917912 chr3R 8917970 8917992 5 80 0.5 1.5 1.0 2.5 102 chr3R 8917890 intron pyd - chr3R 8917941 intron pyd - chr3R 8917992 intron pyd - chr3R_5_8915001 chr3R_8915001 RAL-318 1065 chr3R 9095714 9095723 chr3R 9096034 9096034 5 318 2.0 3.5 2.8 1.3 320 chr3R 9095714 intron pum - chr3R 9095874 intron pum - chr3R 9096034 intron pum - chr3R_5_9095001 chr3R_9095001 RAL-318 1066 chr3R 9141168 9141191 chr3R 9141259 9141282 6 90 1.5 0.5 1.0 3.0 114 chr3R 9141168 intron pum - chr3R 9141225 intron pum - chr3R 9141282 intron pum - chr3R_6_9140001 chr3R_9140001 RAL-318 1067 chr3R 9170322 9170360 chr3R 9170777 9170815 10 452 4.5 1.5 3.0 2.5 493 chr3R 9170322 intron pum - chr3R 9170568 intron pum - chr3R 9170815 intron pum - chr3R_10_9170001 chr3R_9170001 RAL-318 1068 chr3R 9227935 9227966 chr3R 9228049 9228080 9 111 3.5 1.0 2.2 2.8 145 chr3R 9227935 intron pum - chr3R 9228008 intron pum - chr3R 9228080 intron pum - chr3R_9_9225001 chr3R_9225001 RAL-318 1069 chr3R 9278782 9278811 chr3R 9284042 9284071 Rt1a 9 5258 2.0 5.5 3.8 1.9 5289 chr3R 9278782 intergenic not near genes chr3R 9281426 intergenic not near genes chr3R 9284071 intergenic not near genes chr3R_9_9280001 chr3R_9280001 RAL-318 1070 chr3R 9319570 9319606 chr3R 9320005 9320041 jockey 10 435 0.5 2.5 1.5 4.0 471 chr3R 9319570 intron CG8861 - chr3R 9319806 intron CG8861 - chr3R 9320041 intron CG8861 - chr3R_10_9315001 chr3R_9315001 RAL-318 1071 chr3R 9434687 9434723 chr3R 9434774 9434810 7 85 3.0 2.5 2.8 1.8 123 chr3R 9434687 intron ps + chr3R 9434748 intron ps + chr3R 9434810 intron ps + chr3R_7_9430001 chr3R_9430001 RAL-318 1072 chr3R 9601464 9601493 chr3R 9601582 9601610 4 117 2.5 1.5 2.0 1.3 146 chr3R 9601464 intron CG8312 + chr3R 9601537 intron CG8312 + chr3R 9601610 intron CG8312 + chr3R_4_9600001 chr3R_9600001 RAL-318 1073 chr3R 9829413 9829435 chr3R 9829498 9829520 4 83 2.5 2.0 2.2 1.2 107 chr3R 9829413 intron Teh1 - chr3R 9829466 intron Teh1 - chr3R 9829520 intron Teh1 - chr3R_4_9825001 chr3R_9825001 RAL-318 1074 chr3R 9884716 9884748 chr3R 9884806 9884838 9 89 4.5 3.0 3.8 1.9 122 chr3R 9884716 intron Glut4EF + chr3R 9884777 intron Glut4EF + chr3R 9884838 intron Glut4EF + chr3R_9_9880001 chr3R_9880001 RAL-318 1075 chr3R 10073770 10073801 chr3R 10073879 10073894 8 107 2.5 2.0 2.2 2.5 124 chr3R 10073770 intergenic nerfin-2 +,CG5361 - chr3R 10073832 3` UTR CG5361 - chr3R 10073894 exon CG5361 - chr3R_8_10070001 chr3R_10070001 RAL-318 1076 chr3R 10275558 10275579 chr3R 10275635 10275648 4 75 1.0 2.0 1.5 1.6 90 chr3R 10275558 intron CG43143 + chr3R 10275603 intron CG43143 + chr3R 10275648 intron CG43143 + chr3R_4_10275001 chr3R_10275001 RAL-318 1077 chr3R 10531866 10531898 chr3R 10531947 10531978 8 80 1.0 3.0 2.0 2.7 112 chr3R 10531866 intron hth - chr3R 10531922 intron hth - chr3R 10531978 intron hth - chr3R_8_10530001 chr3R_10530001 RAL-318 1078 chr3R 10646107 10646141 chr3R 10646256 10646292 6 148 1.0 3.0 2.0 2.0 185 chr3R 10646107 intergenic CR44018 + chr3R 10646200 intergenic CR44018 + chr3R 10646292 intergenic not near genes chr3R_6_10645001 chr3R_10645001 RAL-318 1079 chr3R 10723766 10723795 chr3R 10723858 10723884 8 91 3.0 1.0 2.0 2.7 118 chr3R 10723766 intergenic not near genes chr3R 10723825 intergenic not near genes chr3R 10723884 intergenic not near genes chr3R_8_10720001 chr3R_10720001 RAL-318 1080 chr3R 10727649 10727671 chr3R 10727729 10727750 8 79 3.5 3.0 3.2 1.9 101 chr3R 10727649 intergenic not near genes chr3R 10727700 intergenic not near genes chr3R 10727750 intergenic not near genes chr3R_8_10725001 chr3R_10725001 RAL-318 1081 chr3R 10745427 10745455 chr3R 10745512 10745542 10 86 2.5 3.0 2.8 2.6 115 chr3R 10745427 intron TkR86C - chr3R 10745484 intron TkR86C - chr3R 10745542 intron TkR86C - chr3R_10_10745001 chr3R_10745001 RAL-318 1082 chr3R 10899455 10899473 chr3R 10899528 10899547 7 70 6.0 1.5 3.8 1.5 92 chr3R 10899455 intergenic not near genes chr3R 10899501 intergenic not near genes chr3R 10899547 intergenic not near genes chr3R_7_10895001 chr3R_10895001 RAL-318 1083 chr3R 10919688 10919710 chr3R 10919766 10919788 5 78 5.0 2.5 3.8 1.0 100 chr3R 10919688 intergenic not near genes chr3R 10919738 intergenic not near genes chr3R 10919788 intergenic not near genes chr3R_5_10915001 chr3R_10915001 RAL-318 1084 chr3R 10920057 10920079 chr3R 10920121 10920157 5 70 1.0 3.0 2.0 1.7 100 chr3R 10920057 intergenic not near genes chr3R 10920107 intergenic not near genes chr3R 10920157 intergenic not near genes chr3R_5_10920001 chr3R_10920001 RAL-318 1085 chr3R 10927275 10927305 chr3R 10927603 10927633 7 326 1.0 6.5 3.8 1.5 358 chr3R 10927275 intergenic not near genes chr3R 10927454 intergenic not near genes chr3R 10927633 intergenic not near genes chr3R_7_10925001 chr3R_10925001 RAL-318 1086 chr3R 10979657 10979674 chr3R 10979739 10979756 7 81 3.5 2.5 3.0 1.8 99 chr3R 10979657 intron CG34114 + chr3R 10979706 intron CG34114 + chr3R 10979756 intron CG34114 + chr3R_7_10975001 chr3R_10975001 RAL-318 1087 chr3R 11048280 11048299 chr3R 11048443 11048462 9 162 2.0 2.5 2.2 2.8 182 chr3R 11048280 3` UTR CG34114 + chr3R 11048371 3` UTR CG34114 + chr3R 11048462 3` UTR CG34114 + chr3R_9_11045001 chr3R_11045001 RAL-318 1088 chr3R 11058999 11059032 chr3R 11059113 11059132 12 111 0.5 1.5 1.0 6.0 133 chr3R 11058999 intergenic not near genes chr3R 11059066 intergenic not near genes chr3R 11059132 intergenic not near genes chr3R_12_11055001 chr3R_11055001 RAL-318 1089 chr3R 11078956 11078980 chr3R 11079036 11079060 9 80 3.0 6.5 4.8 1.6 104 chr3R 11078956 intergenic not near genes chr3R 11079008 intergenic not near genes chr3R 11079060 intergenic not near genes chr3R_9_11075001 chr3R_11075001 RAL-318 1090 chr3R 11085459 11085492 chr3R 11085536 11085569 7 74 0.5 3.0 1.8 2.5 110 chr3R 11085459 3` UTR CR44940 - chr3R 11085514 intergenic CR44940 - chr3R 11085569 intergenic CR44940 - chr3R_7_11085001 chr3R_11085001 RAL-318 1091 chr3R 11102335 11102348 chr3R 11102416 11102429 7 81 5.5 5.5 5.5 1.1 94 chr3R 11102335 intergenic not near genes chr3R 11102382 intergenic not near genes chr3R 11102429 intergenic not near genes chr3R_7_11100001 chr3R_11100001 RAL-318 1092 chr3R 11174605 11174612 chr3R 11175319 11175325 5 714 18.0 25.5 21.8 0.2 720 chr3R 11174605 exon Ugt86Dj - chr3R 11174965 intron Ugt86Dj - chr3R 11175325 exon Ugt86Dj - chr3R_5_11170001 chr3R_11170001 RAL-318 1093 chr3R 11476953 11476970 chr3R 11477055 11477072 5 101 0.0 2.0 1.0 2.5 119 chr3R 11476953 intergenic not near genes chr3R 11477012 intergenic not near genes chr3R 11477072 intergenic not near genes chr3R_5_11475001 chr3R_11475001 RAL-318 1094 chr3R 11513848 11513871 chr3R 11513930 11513931 8 76 2.5 3.5 3.0 2.0 83 chr3R 11513848 intergenic not near genes chr3R 11513890 intergenic not near genes chr3R 11513931 intergenic not near genes chr3R_8_11510001 chr3R_11510001 RAL-318 1095 chr3R 11513872 11513874 chr3R 11513927 11513957 4 68 2.5 2.0 2.2 1.2 85 chr3R 11513872 intergenic not near genes chr3R 11513914 intergenic not near genes chr3R 11513957 intergenic not near genes chr3R_4_11510001 chr3R_11510001 RAL-318 1096 chr3R 11518815 11518848 chr3R 11518906 11518939 10 89 1.5 4.0 2.8 2.6 124 chr3R 11518815 intergenic not near genes chr3R 11518877 intergenic not near genes chr3R 11518939 intergenic not near genes chr3R_10_11515001 chr3R_11515001 RAL-318 1097 chr3R 11684377 11684389 chr3R 11684574 11684578 6 196 3.0 3.5 3.2 1.4 201 chr3R 11684377 intergenic CG6830 -,CG6834 - chr3R 11684478 intergenic CG6830 -,CG6834 - chr3R 11684578 intergenic CG6834 -,CG6830 - chr3R_6_11680001 chr3R_11680001 RAL-318 1098 chr3R 11684633 11684666 chr3R 11687758 11687777 13 3121 3.0 6.0 4.5 2.4 3144 chr3R 11684633 intergenic CG6834 -,CG6830 - chr3R 11686205 exon CG6834 - chr3R 11687777 exon CG6834 - chr3R_13_11685001 chr3R_11685001 RAL-318 1099 chr3R 11696352 11696383 chr3R 11696430 11696459 7 78 2.0 1.0 1.5 2.8 107 chr3R 11696352 intergenic CG14717 + chr3R 11696406 intergenic CG14717 + chr3R 11696459 intergenic CG14717 + chr3R_7_11695001 chr3R_11695001 RAL-318 1100 chr3R 11698144 11698169 chr3R 11698221 11698246 11 76 2.0 5.0 3.5 2.4 102 chr3R 11698144 3` UTR CG14717 + chr3R 11698195 3` UTR CG14717 + chr3R 11698246 3` UTR CG14717 + chr3R_11_11695001 chr3R_11695001 RAL-318 1101 chr3R 11710208 11710237 chr3R 11710286 11710315 15 74 1.5 3.0 2.2 4.7 107 chr3R 11710208 intergenic not near genes chr3R 11710262 intergenic not near genes chr3R 11710315 intergenic not near genes chr3R_15_11710001 chr3R_11710001 RAL-318 1102 chr3R 11841071 11841095 chr3R 11846259 11846262 BS 5 5184 3.0 5.5 4.2 1.0 5191 chr3R 11841071 intron CG6959 - chr3R 11843666 intron CG6959 - chr3R 11846262 intron CG6959 - chr3R_5_11840001 chr3R_11840001 RAL-318 1103 chr3R 11853434 11853464 chr3R 11853583 11853596 4 140 1.0 0.0 0.5 2.7 162 chr3R 11853434 intron CG6959 - chr3R 11853515 intron CG6959 - chr3R 11853596 intron CG6959 - chr3R_4_11850001 chr3R_11850001 RAL-318 1104 chr3R 11914372 11914406 chr3R 11914457 11914490 6 85 2.5 4.0 3.2 1.4 118 chr3R 11914372 intron Cad87A - chr3R 11914431 intron Cad87A - chr3R 11914490 intron Cad87A - chr3R_6_11910001 chr3R_11910001 RAL-318 1105 chr3R 11916429 11916455 chr3R 11916505 11916533 8 77 6.0 1.0 3.5 1.8 104 chr3R 11916429 intron Cad87A - chr3R 11916481 intron Cad87A - chr3R 11916533 intron Cad87A - chr3R_8_11915001 chr3R_11915001 RAL-318 1106 chr3R 12080864 12080897 chr3R 12080941 12080974 10 75 2.0 2.5 2.2 3.1 110 chr3R 12080864 intron CG14741 - chr3R 12080919 intron CG14741 - chr3R 12080974 intron CG14741 - chr3R_10_12080001 chr3R_12080001 RAL-318 1107 chr3R 12135507 12135531 chr3R 12135744 12135770 6 238 3.0 2.5 2.8 1.6 263 chr3R 12135507 intergenic not near genes chr3R 12135638 intergenic not near genes chr3R 12135770 intergenic not near genes chr3R_6_12135001 chr3R_12135001 RAL-318 1108 chr3R 12344149 12344156 chr3R 12344207 12344229 5 72 0.5 4.5 2.5 1.4 80 chr3R 12344149 intergenic not near genes chr3R 12344189 intergenic not near genes chr3R 12344229 intergenic not near genes chr3R_5_12340001 chr3R_12340001 RAL-318 1109 chr3R 12365201 12365217 chr3R 12365407 12365423 4 206 4.0 3.5 3.8 0.8 222 chr3R 12365201 exon GstD10 - chr3R 12365312 exon GstD10 - chr3R 12365423 exon GstD10 - chr3R_4_12365001 chr3R_12365001 RAL-318 1110 chr3R 12365221 12365230 chr3R 12365406 12365434 4 200 3.5 3.0 3.2 1.0 213 chr3R 12365221 exon GstD10 - chr3R 12365328 exon GstD10 - chr3R 12365434 exon GstD10 - chr3R_4_12365001 chr3R_12365001 RAL-318 1111 chr3R 12546455 12546484 chr3R 12546537 12546567 10 83 3.5 1.5 2.5 2.9 112 chr3R 12546455 intron Octbeta3R - chr3R 12546511 intron Octbeta3R - chr3R 12546567 intron Octbeta3R - chr3R_10_12545001 chr3R_12545001 RAL-318 1112 chr3R 12588628 12588637 chr3R 12588716 12588725 4 88 3.0 7.0 5.0 0.7 97 chr3R 12588628 intron Octbeta2R - chr3R 12588676 intron Octbeta2R - chr3R 12588725 intron Octbeta2R - chr3R_4_12585001 chr3R_12585001 RAL-318 1113 chr3R 12603848 12603877 chr3R 12603935 12603964 10 85 4.0 6.0 5.0 1.7 116 chr3R 12603848 intergenic not near genes chr3R 12603906 intergenic not near genes chr3R 12603964 intergenic not near genes chr3R_10_12600001 chr3R_12600001 RAL-318 1114 chr3R 12704840 12705042 chr3R 12704919 12705119 15 78 1.5 1.0 1.2 6.8 279 chr3R 12704840 3` UTR Past1 + chr3R 12704980 intergenic Past1 +,CG12279 + chr3R 12705119 5` UTR CG12279 + chr3R_15_12700001 chr3R_12700001 RAL-318 1115 chr3R 12763123 12763152 chr3R 12763200 12763229 6 77 0.0 0.0 0.0 6.0 106 chr3R 12763123 intron beat-Vc - chr3R 12763176 intron beat-Vc - chr3R 12763229 intron beat-Vc - chr3R_6_12760001 chr3R_12760001 RAL-318 1116 chr3R 12814240 12814265 chr3R 12814316 12814317 8 73 1.5 6.5 4.0 1.6 77 chr3R 12814240 intron CG31345 - chr3R 12814278 intron CG31345 - chr3R 12814317 intron CG31345 - chr3R_8_12810001 chr3R_12810001 RAL-318 1117 chr3R 12880117 12880145 chr3R 12880193 12880221 7 76 4.0 1.5 2.8 1.8 104 chr3R 12880117 intergenic not near genes chr3R 12880169 intergenic not near genes chr3R 12880221 intergenic not near genes chr3R_7_12880001 chr3R_12880001 RAL-318 1118 chr3R 12920151 12920184 chr3R 12925354 12925387 copia 6 5200 3.0 5.0 4.0 1.2 5236 chr3R 12920151 intron beat-Vb + chr3R 12922769 intron beat-Vb + chr3R 12925387 intron beat-Vb + chr3R_6_12920001 chr3R_12920001 RAL-318 1119 chr3R 12999123 12999143 chr3R 12999201 12999221 6 78 3.5 2.0 2.8 1.6 98 chr3R 12999123 intron CG7518 + chr3R 12999172 intron CG7518 + chr3R 12999221 intron CG7518 + chr3R_6_12995001 chr3R_12995001 RAL-318 1120 chr3R 13059961 13059974 chr3R 13060156 13060169 5 193 1.5 2.0 1.8 1.8 208 chr3R 13059961 intron sim + chr3R 13060065 intron sim + chr3R 13060169 intron sim + chr3R_5_13060001 chr3R_13060001 RAL-318 1121 chr3R 13138322 13138353 chr3R 13138410 13138414 10 74 1.0 1.0 1.0 5.0 92 chr3R 13138322 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13138368 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13138414 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_10_13135001 chr3R_13135001 RAL-318 1122 chr3R 13143054 13143065 chr3R 13148615 13148641 mdg3 9 5570 3.0 5.5 4.2 1.7 5587 chr3R 13143054 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13145848 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13148641 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_9_13145001 chr3R_13145001 RAL-318 1123 chr3R 13174559 13174571 chr3R 13174631 13174640 5 73 4.5 4.5 4.5 0.9 81 chr3R 13174559 intergenic not near genes chr3R 13174600 intergenic not near genes chr3R 13174640 intergenic not near genes chr3R_5_13170001 chr3R_13170001 RAL-318 1124 chr3R 13195951 13195984 chr3R 13196046 13196070 16 92 5.0 2.5 3.8 3.3 119 chr3R 13195951 intergenic not near genes chr3R 13196010 intergenic not near genes chr3R 13196070 intergenic not near genes chr3R_16_13195001 chr3R_13195001 RAL-318 1125 chr3R 13197175 13197193 chr3R 13198455 13198469 4 1278 10.5 5.0 7.8 0.5 1294 chr3R 13197175 intergenic not near genes chr3R 13197822 intergenic not near genes chr3R 13198469 intergenic not near genes chr3R_4_13195001 chr3R_13195001 RAL-318 1126 chr3R 13197028 13197048 chr3R 13198498 13198527 10 1471 13.5 5.5 9.5 1.0 1499 chr3R 13197028 intergenic not near genes chr3R 13197778 intergenic not near genes chr3R 13198527 intergenic not near genes chr3R_10_13195001 chr3R_13195001 RAL-318 1127 chr3R 13206662 13206680 chr3R 13206898 13206917 8 236 2.0 4.0 3.0 2.0 255 chr3R 13206662 intergenic not near genes chr3R 13206790 intergenic not near genes chr3R 13206917 intergenic not near genes chr3R_8_13205001 chr3R_13205001 RAL-318 1128 chr3R 13254546 13254572 chr3R 13254776 13254788 5 225 7.0 7.5 7.2 0.6 242 chr3R 13254546 intron Ace - chr3R 13254667 intron Ace - chr3R 13254788 intron Ace - chr3R_5_13250001 chr3R_13250001 RAL-318 1129 chr3R 13314106 13314130 chr3R 13318894 13318909 Doc 5 4786 1.0 2.5 1.8 1.8 4803 chr3R 13314106 intergenic not near genes chr3R 13316508 intergenic not near genes chr3R 13318909 intergenic CG45080 - chr3R_5_13315001 chr3R_13315001 RAL-318 1130 chr3R 13603063 13603350 chr3R 13603154 13603442 6 91 6.0 2.5 4.2 1.2 379 chr3R 13603063 intergenic not near genes chr3R 13603252 intergenic not near genes chr3R 13603442 intergenic not near genes chr3R_6_13600001 chr3R_13600001 RAL-318 1131 chr3R 13693028 13693028 chr3R 21907534 21907536 9 8214507 4.5 24.0 14.2 0.6 8214508 chr3R 13693028 3` UTR flfl + chr3R 17800282 exon CG17803 - chr3R 21907536 intergenic CG6678 + chr3R_9_17800001 chr3R_17800001 RAL-318 1132 chr3R 13712631 13712651 chr3R 13712726 13712736 6 90 2.0 2.0 2.0 2.0 105 chr3R 13712631 3` UTR CR34044 - chr3R 13712684 3` UTR CR34044 - chr3R 13712736 3` UTR CR34044 - chr3R_6_13710001 chr3R_13710001 RAL-318 1133 chr3R 13850326 13850338 chr3R 13850414 13850426 4 88 0.0 6.5 3.2 1.0 100 chr3R 13850326 intergenic not near genes chr3R 13850376 intergenic not near genes chr3R 13850426 intergenic not near genes chr3R_4_13850001 chr3R_13850001 RAL-318 1134 chr3R 13958553 13958580 chr3R 13958649 13958676 4 96 1.0 1.0 1.0 2.0 123 chr3R 13958553 intergenic Ipp + chr3R 13958614 intergenic Ipp + chr3R 13958676 intergenic Ipp + chr3R_4_13955001 chr3R_13955001 RAL-318 1135 chr3R 13975379 13975406 chr3R 13975459 13975469 5 76 2.0 2.0 2.0 1.7 90 chr3R 13975379 intron rdx - chr3R 13975424 intron rdx - chr3R 13975469 intron rdx - chr3R_5_13975001 chr3R_13975001 RAL-318 1136 chr3R 14021644 14021662 chr3R 14023468 14023487 S-element 4 1825 3.0 2.5 2.8 1.1 1843 chr3R 14021644 intron rdx - chr3R 14022566 intron rdx - chr3R 14023487 intron rdx - chr3R_4_14020001 chr3R_14020001 RAL-318 1137 chr3R 14070130 14070146 chr3R 14070210 14070227 5 81 4.0 2.0 3.0 1.2 97 chr3R 14070130 intron foxo + chr3R 14070178 intron foxo + chr3R 14070227 intron foxo + chr3R_5_14070001 chr3R_14070001 RAL-318 1138 chr3R 14083402 14083435 chr3R 14083503 14083536 4 101 0.5 0.0 0.2 3.3 134 chr3R 14083402 intron foxo + chr3R 14083469 intron foxo + chr3R 14083536 intron foxo + chr3R_4_14080001 chr3R_14080001 RAL-318 1139 chr3R 14180812 14180831 chr3R 14185576 14185582 F-element 5 4761 2.0 1.0 1.5 2.0 4770 chr3R 14180812 intron Dop1R1 - chr3R 14183197 intron Dop1R1 - chr3R 14185582 intron Dop1R1 - chr3R_5_14180001 chr3R_14180001 RAL-318 1140 chr3R 14194433 14194460 chr3R 14203582 14203609 roo 5 9149 2.0 4.5 3.2 1.2 9176 chr3R 14194433 intron Dop1R1 - chr3R 14199021 intron Dop1R1 - chr3R 14203609 intron Dop1R1 - chr3R_5_14195001 chr3R_14195001 RAL-318 1141 chr3R 14246391 14246413 chr3R 14247886 14247902 jockey 6 1492 3.5 5.5 4.5 1.1 1511 chr3R 14246391 intergenic not near genes chr3R 14247146 intergenic not near genes chr3R 14247902 intergenic not near genes chr3R_6_14245001 chr3R_14245001 RAL-318 1142 chr3R 14278420 14278450 chr3R 14278502 14278532 8 81 2.0 2.0 2.0 2.7 112 chr3R 14278420 intron trx - chr3R 14278476 intron trx - chr3R 14278532 intron trx - chr3R_8_14275001 chr3R_14275001 RAL-318 1143 chr3R 14295528 14295559 chr3R 14295611 14295643 6 79 0.5 1.0 0.8 3.3 115 chr3R 14295528 intron CG12207 + chr3R 14295586 intron CG12207 + chr3R 14295643 intron CG12207 + chr3R_6_14295001 chr3R_14295001 RAL-318 1144 chr3R 14325387 14325419 chr3R 14325476 14325508 13 89 3.0 5.5 4.2 2.5 121 chr3R 14325387 exon Afti - chr3R 14325448 exon Afti - chr3R 14325508 exon Afti - chr3R_13_14325001 chr3R_14325001 RAL-318 1145 chr3R 14364067 14364090 chr3R 14364143 14364151 9 72 2.0 5.0 3.5 2.0 84 chr3R 14364067 intron NK7.1 - chr3R 14364109 intron NK7.1 - chr3R 14364151 intron NK7.1 - chr3R_9_14360001 chr3R_14360001 RAL-318 1146 chr3R 14384556 14384566 chr3R 14384662 14384671 4 106 6.5 0.0 3.2 1.0 115 chr3R 14384556 intergenic not near genes chr3R 14384614 intergenic not near genes chr3R 14384671 intergenic not near genes chr3R_4_14380001 chr3R_14380001 RAL-318 1147 chr3R 14524544 14524575 chr3R 14524634 14524660 10 88 1.0 3.5 2.2 3.1 116 chr3R 14524544 intron Pde6 - chr3R 14524602 intron Pde6 - chr3R 14524660 intron Pde6 - chr3R_10_14520001 chr3R_14520001 RAL-318 1148 chr3R 14527402 14527415 chr3R 14527479 14527491 5 76 4.0 3.5 3.8 1.0 89 chr3R 14527402 intron Pde6 - chr3R 14527446 intron Pde6 - chr3R 14527491 intron Pde6 - chr3R_5_14525001 chr3R_14525001 RAL-318 1149 chr3R 14546040 14546069 chr3R 14546117 14546146 6 73 2.0 0.0 1.0 3.0 106 chr3R 14546040 intron Pde6 - chr3R 14546093 intron Pde6 - chr3R 14546146 intron Pde6 - chr3R_6_14545001 chr3R_14545001 RAL-318 1150 chr3R 14704384 14704418 chr3R 14704461 14704476 14 75 1.5 5.5 3.5 3.1 92 chr3R 14704384 intron kibra - chr3R 14704430 intron kibra - chr3R 14704476 intron kibra - chr3R_14_14700001 chr3R_14700001 RAL-318 1151 chr3R 14709694 14709723 chr3R 14709803 14709833 5 110 2.5 4.0 3.2 1.2 139 chr3R 14709694 intron kibra - chr3R 14709764 intron kibra - chr3R 14709833 intron kibra - chr3R_5_14705001 chr3R_14705001 RAL-318 1152 chr3R 14796311 14796317 chr3R 14796454 14796466 5 148 5.5 3.0 4.2 1.0 155 chr3R 14796311 5` UTR CG14855 + chr3R 14796388 5` UTR CG14855 + chr3R 14796466 5` UTR CG14855 + chr3R_5_14795001 chr3R_14795001 RAL-318 1153 chr3R 14806680 14806692 chr3R 14806757 14806769 5 76 5.5 2.5 4.0 1.0 89 chr3R 14806680 3` UTR btsz - chr3R 14806724 3` UTR btsz - chr3R 14806769 3` UTR btsz - chr3R_5_14805001 chr3R_14805001 RAL-318 1154 chr3R 14874814 14874829 chr3R 14874898 14874913 4 83 5.5 1.5 3.5 0.9 99 chr3R 14874814 intron btsz - chr3R 14874864 intron btsz - chr3R 14874913 intron btsz - chr3R_4_14870001 chr3R_14870001 RAL-318 1155 chr3R 14905889 14905920 chr3R 14905994 14906021 13 100 4.0 2.5 3.2 3.1 132 chr3R 14905889 intergenic not near genes chr3R 14905955 intergenic not near genes chr3R 14906021 intergenic not near genes chr3R_13_14905001 chr3R_14905001 RAL-318 1156 chr3R 14923738 14923748 chr3R 14923794 14923822 4 71 2.0 4.5 3.2 1.0 84 chr3R 14923738 3` UTR CR45598 - chr3R 14923780 intergenic CR45598 - chr3R 14923822 intergenic CR45598 - chr3R_4_14920001 chr3R_14920001 RAL-318 1157 chr3R 14954809 14954841 chr3R 14955018 14955052 9 208 2.0 2.0 2.0 3.0 243 chr3R 14954809 intergenic not near genes chr3R 14954930 intergenic not near genes chr3R 14955052 intergenic not near genes chr3R_9_14950001 chr3R_14950001 RAL-318 1158 chr3R 15003249 15003281 chr3R 15003325 15003358 7 73 1.0 1.5 1.2 3.2 109 chr3R 15003249 intergenic not near genes chr3R 15003304 intergenic not near genes chr3R 15003358 intergenic not near genes chr3R_7_15000001 chr3R_15000001 RAL-318 1159 chr3R 15026333 15026346 chr3R 15026419 15026420 4 83 2.5 3.0 2.8 1.1 87 chr3R 15026333 intergenic not near genes chr3R 15026376 intergenic not near genes chr3R 15026420 intergenic not near genes chr3R_4_15025001 chr3R_15025001 RAL-318 1160 chr3R 15049463 15049488 chr3R 15049589 15049613 12 124 3.0 8.0 5.5 1.8 150 chr3R 15049463 intergenic not near genes chr3R 15049538 intergenic not near genes chr3R 15049613 intergenic not near genes chr3R_12_15045001 chr3R_15045001 RAL-318 1161 chr3R 15114913 15114945 chr3R 15114990 15115022 8 74 4.5 1.5 3.0 2.0 109 chr3R 15114913 intron CG42788 - chr3R 15114968 intron CG42788 - chr3R 15115022 intron CG42788 - chr3R_8_15110001 chr3R_15110001 RAL-318 1162 chr3R 15119545 15119559 chr3R 15119620 15119622 5 69 7.0 6.5 6.8 0.6 77 chr3R 15119545 intron CG42788 - chr3R 15119584 intron CG42788 - chr3R 15119622 intron CG42788 - chr3R_5_15115001 chr3R_15115001 RAL-318 1163 chr3R 15132061 15132080 chr3R 15135121 15135140 Juan 6 3060 3.0 6.0 4.5 1.1 3079 chr3R 15132061 intergenic CG42788 - chr3R 15133600 intergenic not near genes chr3R 15135140 3` UTR CG6912 - chr3R_6_15130001 chr3R_15130001 RAL-318 1164 chr3R 15160564 15160591 chr3R 15160662 15160689 8 98 2.0 4.0 3.0 2.0 125 chr3R 15160564 intron Gyc88E + chr3R 15160626 intron Gyc88E + chr3R 15160689 intron Gyc88E + chr3R_8_15160001 chr3R_15160001 RAL-318 1165 chr3R 15286987 15286988 chr3R 21907534 21907534 7 6620547 20.0 24.0 22.0 0.3 6620547 chr3R 15286987 intron Tm1 + chr3R 18597260 intron,exon qin +,CG14304 - chr3R 21907534 intergenic CG6678 + chr3R_7_18595001 chr3R_18595001 RAL-318 1166 chr3R 15416250 15416284 chr3R 15416330 15416356 9 78 4.0 5.5 4.8 1.6 106 chr3R 15416250 3` UTR Atx2 + chr3R 15416303 3` UTR Atx2 + chr3R 15416356 3` UTR Atx2 + chr3R_9_15415001 chr3R_15415001 RAL-318 1167 chr3R 15452274 15452311 chr3R 15452351 15452388 9 76 1.0 2.5 1.8 3.2 114 chr3R 15452274 intron AdamTS-A - chr3R 15452331 intron AdamTS-A - chr3R 15452388 intron AdamTS-A - chr3R_9_15450001 chr3R_15450001 RAL-318 1168 chr3R 15464772 15464779 chr3R 15464861 15464869 4 90 5.5 6.0 5.8 0.6 97 chr3R 15464772 intron AdamTS-A - chr3R 15464820 intron AdamTS-A - chr3R 15464869 intron AdamTS-A - chr3R_4_15460001 chr3R_15460001 RAL-318 1169 chr3R 15517607 15517628 chr3R 15517681 15517693 5 75 3.5 3.5 3.5 1.1 86 chr3R 15517607 intergenic not near genes chr3R 15517650 intergenic not near genes chr3R 15517693 intergenic not near genes chr3R_5_15515001 chr3R_15515001 RAL-318 1170 chr3R 15601163 15601196 chr3R 15608685 15608718 412 6 7517 3.5 2.0 2.8 1.6 7555 chr3R 15601163 intergenic not near genes chr3R 15604940 intergenic not near genes chr3R 15608718 intergenic not near genes chr3R_6_15600001 chr3R_15600001 RAL-318 1171 chr3R 15618747 15618759 chr3R 15626210 15626232 blood 5 7468 0.0 3.0 1.5 2.0 7485 chr3R 15618747 intergenic not near genes chr3R 15622490 intergenic not near genes chr3R 15626232 intergenic not near genes chr3R_5_15620001 chr3R_15620001 RAL-318 1172 chr3R 15676552 15676573 chr3R 15676631 15676632 4 71 4.5 2.0 3.2 1.0 80 chr3R 15676552 intron pxb + chr3R 15676592 intron pxb + chr3R 15676632 intron pxb + chr3R_4_15675001 chr3R_15675001 RAL-318 1173 chr3R 15691183 15691331 chr3R 15691288 15691418 5 94 0.5 0.5 0.5 3.3 235 chr3R 15691183 intergenic not near genes chr3R 15691300 intergenic not near genes chr3R 15691418 intergenic not near genes chr3R_5_15690001 chr3R_15690001 RAL-318 1174 chr3R 15868939 15868959 chr3R 15869019 15869039 5 80 0.5 0.0 0.2 4.2 100 chr3R 15868939 intron CG31183 - chr3R 15868989 intron CG31183 - chr3R 15869039 intron CG31183 - chr3R_5_15865001 chr3R_15865001 RAL-318 1175 chr3R 15891663 15891677 chr3R 15892055 15892068 6 391 6.0 3.0 4.5 1.1 405 chr3R 15891663 intron CG14877 - chr3R 15891866 intron CG14877 - chr3R 15892068 intron CG14877 - chr3R_6_15890001 chr3R_15890001 RAL-318 1176 chr3R 15892663 15892689 chr3R 15892732 15892770 8 78 0.5 1.0 0.8 4.4 107 chr3R 15892663 intron CG14877 - chr3R 15892716 intron CG14877 - chr3R 15892770 intron CG14877 - chr3R_8_15890001 chr3R_15890001 RAL-318 1177 chr3R 16023860 16023888 chr3R 16023937 16023965 9 77 2.5 5.0 3.8 1.9 105 chr3R 16023860 intergenic not near genes chr3R 16023912 intergenic not near genes chr3R 16023965 intergenic not near genes chr3R_9_16020001 chr3R_16020001 RAL-318 1178 chr3R 16307431 16307445 chr3R 16307508 16307523 8 77 4.0 2.5 3.2 1.9 92 chr3R 16307431 intron Zip89B + chr3R 16307477 intron Zip89B + chr3R 16307523 intron Zip89B + chr3R_8_16305001 chr3R_16305001 RAL-318 1179 chr3R 16447743 16447777 chr3R 16447823 16447857 11 81 3.0 3.0 3.0 2.8 114 chr3R 16447743 intron Pak3 - chr3R 16447800 intron Pak3 - chr3R 16447857 intron Pak3 - chr3R_11_16445001 chr3R_16445001 RAL-318 1180 chr3R 16472580 16472586 chr3R 16472654 16472657 4 74 9.5 6.0 7.8 0.5 77 chr3R 16472580 intergenic Gyc-89Da + chr3R 16472618 5` UTR Gyc-89Da + chr3R 16472657 5` UTR Gyc-89Da + chr3R_4_16470001 chr3R_16470001 RAL-318 1181 chr3R 16667077 16667106 chr3R 16667159 16667188 12 80 2.5 4.0 3.2 2.9 111 chr3R 16667077 intron Ubx - chr3R 16667132 intron Ubx - chr3R 16667188 intron Ubx - chr3R_12_16665001 chr3R_16665001 RAL-318 1182 chr3R 16671505 16671530 chr3R 16671588 16671601 4 79 4.5 3.0 3.8 0.8 96 chr3R 16671505 intron Ubx - chr3R 16671553 intron Ubx - chr3R 16671601 intron Ubx - chr3R_4_16670001 chr3R_16670001 RAL-318 1183 chr3R 16676475 16676508 chr3R 16676552 16676587 6 78 2.5 6.0 4.2 1.2 112 chr3R 16676475 intron Ubx - chr3R 16676531 intron Ubx - chr3R 16676587 intron Ubx - chr3R_6_16675001 chr3R_16675001 RAL-318 1184 chr3R 16756326 16756328 chr3R 16762517 16762519 diver 4 6191 9.0 2.5 5.8 0.6 6193 chr3R 16756326 intron bxd - chr3R 16759422 intron bxd - chr3R 16762519 intron bxd - chr3R_4_16755001 chr3R_16755001 RAL-318 1185 chr3R 16756329 16756351 chr3R 16762509 16762542 diver 8 6187 4.5 2.0 3.2 1.9 6213 chr3R 16756329 intron bxd - chr3R 16759436 intron bxd - chr3R 16762542 intron bxd - chr3R_8_16755001 chr3R_16755001 RAL-318 1186 chr3R 17178218 17178250 chr3R 17178504 17178532 9 284 0.5 3.5 2.0 3.0 314 chr3R 17178218 intron Mur89F - chr3R 17178375 intron Mur89F - chr3R 17178532 intron Mur89F - chr3R_9_17175001 chr3R_17175001 RAL-318 1187 chr3R 17335163 17335179 chr3R 17335239 17335255 8 74 4.0 2.0 3.0 2.0 92 chr3R 17335163 intron beat-IIa - chr3R 17335209 intron beat-IIa - chr3R 17335255 intron beat-IIa - chr3R_8_17335001 chr3R_17335001 RAL-318 1188 chr3R 17346694 17346715 chr3R 17348257 17348275 F-element 4 1562 0.5 7.0 3.8 0.8 1581 chr3R 17346694 intron beat-IIa - chr3R 17347484 intron beat-IIa - chr3R 17348275 intron beat-IIa - chr3R_4_17345001 chr3R_17345001 RAL-318 1189 chr3R 17360897 17360908 chr3R 17361079 17361098 6 187 5.0 2.0 3.5 1.3 201 chr3R 17360897 intron beat-IIa - chr3R 17360998 intron beat-IIa - chr3R 17361098 intron beat-IIa - chr3R_6_17360001 chr3R_17360001 RAL-318 1190 chr3R 17461201 17461230 chr3R 17461283 17461310 9 81 1.0 2.5 1.8 3.2 109 chr3R 17461201 intergenic not near genes chr3R 17461256 intergenic not near genes chr3R 17461310 intergenic not near genes chr3R_9_17460001 chr3R_17460001 RAL-318 1191 chr3R 17493328 17493360 chr3R 17493714 17493747 7 383 0.5 3.5 2.0 2.3 419 chr3R 17493328 intron Dscam3 - chr3R 17493538 intron Dscam3 - chr3R 17493747 intron Dscam3 - chr3R_7_17490001 chr3R_17490001 RAL-318 1192 chr3R 17498864 17498874 chr3R 17499006 17499011 4 141 3.0 8.5 5.8 0.6 147 chr3R 17498864 intron Dscam3 - chr3R 17498938 intron Dscam3 - chr3R 17499011 intron Dscam3 - chr3R_4_17495001 chr3R_17495001 RAL-318 1193 chr3R 17591300 17591324 chr3R 17591721 17591739 F-element 12 428 4.5 2.0 3.2 2.9 439 chr3R 17591300 intergenic not near genes chr3R 17591520 intergenic not near genes chr3R 17591739 intergenic not near genes chr3R_12_17590001 chr3R_17590001 RAL-318 1194 chr3R 17625691 17625725 chr3R 17625781 17625800 11 86 1.5 3.5 2.5 3.1 109 chr3R 17625691 exon AttD + chr3R 17625746 exon AttD + chr3R 17625800 exon AttD + chr3R_11_17625001 chr3R_17625001 RAL-318 1195 chr3R 17646794 17646825 chr3R 17646885 17646896 15 89 4.0 3.5 3.8 3.1 102 chr3R 17646794 intergenic not near genes chr3R 17646845 intergenic not near genes chr3R 17646896 intergenic not near genes chr3R_15_17645001 chr3R_17645001 RAL-318 1196 chr3R 17743224 17743239 chr3R 17743302 17743320 7 80 1.0 1.0 1.0 3.5 96 chr3R 17743224 intron TyrRII + chr3R 17743272 intron TyrRII + chr3R 17743320 intron TyrRII + chr3R_7_17740001 chr3R_17740001 RAL-318 1197 chr3R 17773375 17773390 chr3R 17773470 17773485 5 95 1.0 3.5 2.2 1.6 110 chr3R 17773375 intron CG43102 - chr3R 17773430 intron CG43102 - chr3R 17773485 exon CG43102 - chr3R_5_17770001 chr3R_17770001 RAL-318 1198 chr3R 17811200 17811227 chr3R 17811280 17811307 7 80 0.5 0.0 0.2 5.8 107 chr3R 17811200 intergenic CG18012 -,tinc + chr3R 17811254 intergenic CG18012 -,tinc + chr3R 17811307 intergenic CG18012 -,tinc + chr3R_7_17810001 chr3R_17810001 RAL-318 1199 chr3R 17845206 17845214 chr3R 17845264 17845291 9 69 6.5 3.5 5.0 1.5 85 chr3R 17845206 intron tinc + chr3R 17845248 intron tinc + chr3R 17845291 intron tinc + chr3R_9_17845001 chr3R_17845001 RAL-318 1200 chr3R 17888798 17888822 chr3R 17888883 17888903 6 84 6.0 2.5 4.2 1.2 105 chr3R 17888798 intron Rim - chr3R 17888850 intron Rim - chr3R 17888903 intron Rim - chr3R_6_17885001 chr3R_17885001 RAL-318 1201 chr3R 17925869 17925886 chr3R 17927317 17927352 hobo 6 1459 2.5 2.0 2.2 1.9 1483 chr3R 17925869 intron cpo + chr3R 17926610 intron cpo + chr3R 17927352 intron cpo + chr3R_6_17925001 chr3R_17925001 RAL-318 1202 chr3R 18112376 18112394 chr3R 18112482 18112499 5 106 0.0 5.0 2.5 1.4 123 chr3R 18112376 intron sr + chr3R 18112438 intron sr + chr3R 18112499 intron sr + chr3R_5_18110001 chr3R_18110001 RAL-318 1203 chr3R 18501597 18501620 chr3R 18501678 18501701 5 81 3.0 2.0 2.5 1.4 104 chr3R 18501597 intron fru - chr3R 18501649 intron fru - chr3R 18501701 intron fru - chr3R_5_18500001 chr3R_18500001 RAL-318 1204 chr3R 18568552 18568586 chr3R 18568639 18568668 11 82 3.5 5.0 4.2 2.1 116 chr3R 18568552 intergenic not near genes chr3R 18568610 intergenic not near genes chr3R 18568668 intergenic not near genes chr3R_11_18565001 chr3R_18565001 RAL-318 1205 chr3R 18617716 18617744 chr3R 18617796 18617824 5 80 0.5 0.0 0.2 4.2 108 chr3R 18617716 intron,intron qin +,CG14304 - chr3R 18617770 intron,intron qin +,CG14304 - chr3R 18617824 intron,intron qin +,CG14304 - chr3R_5_18615001 chr3R_18615001 RAL-318 1206 chr3R 18766777 18766810 chr3R 18766854 18766883 14 77 3.5 4.0 3.8 2.9 106 chr3R 18766777 intron CG7720 - chr3R 18766830 intron CG7720 - chr3R 18766883 intron CG7720 - chr3R_14_18765001 chr3R_18765001 RAL-318 1207 chr3R 18785867 18785880 chr3R 18785944 18785946 5 74 7.0 2.0 4.5 0.9 79 chr3R 18785867 intron CG7720 - chr3R 18785906 intron CG7720 - chr3R 18785946 intron CG7720 - chr3R_5_18785001 chr3R_18785001 RAL-318 1208 chr3R 18812076 18812108 chr3R 18812153 18812185 11 78 4.5 3.5 4.0 2.2 109 chr3R 18812076 intron CG18208 - chr3R 18812130 intron CG18208 - chr3R 18812185 intron CG18208 - chr3R_11_18810001 chr3R_18810001 RAL-318 1209 chr3R 18857486 18857522 chr3R 18857843 18857878 9 351 4.5 3.0 3.8 1.9 392 chr3R 18857486 intergenic not near genes chr3R 18857682 intergenic not near genes chr3R 18857878 intergenic not near genes chr3R_9_18855001 chr3R_18855001 RAL-318 1210 chr3R 18997068 18997095 chr3R 18997163 18997189 4 95 4.0 1.5 2.8 1.1 121 chr3R 18997068 intron gukh + chr3R 18997128 intron gukh + chr3R 18997189 intron gukh + chr3R_4_18995001 chr3R_18995001 RAL-318 1211 chr3R 19193002 19193014 chr3R 19197289 19197312 F-element 4 4296 0.5 4.0 2.2 1.2 4310 chr3R 19193002 intron CG31475 + chr3R 19195157 intron CG31475 + chr3R 19197312 intron CG31475 + chr3R_4_19195001 chr3R_19195001 RAL-318 1212 chr3R 19207388 19207418 chr3R 19207475 19207506 10 87 2.0 2.5 2.2 3.1 118 chr3R 19207388 intergenic not near genes chr3R 19207447 intergenic not near genes chr3R 19207506 intergenic not near genes chr3R_10_19205001 chr3R_19205001 RAL-318 1213 chr3R 19475239 19475251 chr3R 19475767 19475780 4 528 6.5 2.0 4.2 0.8 541 chr3R 19475239 intron Dys + chr3R 19475510 intron Dys + chr3R 19475780 intron Dys + chr3R_4_19475001 chr3R_19475001 RAL-318 1214 chr3R 19561831 19561846 chr3R 19561908 19561921 8 76 5.5 4.5 5.0 1.3 90 chr3R 19561831 intron Dys + chr3R 19561876 intron Dys + chr3R 19561921 intron Dys + chr3R_8_19560001 chr3R_19560001 RAL-318 1215 chr3R 19569461 19569482 chr3R 19577465 19577485 6 8003 6.0 25.5 15.8 0.4 8024 chr3R 19569461 intron Dys + chr3R 19573473 intron Dys + chr3R 19577485 intron Dys + chr3R_6_19570001 chr3R_19570001 RAL-318 1216 chr3R 19651733 19651752 chr3R 19651807 19651828 6 76 2.5 2.5 2.5 1.7 95 chr3R 19651733 exon CG31219 + chr3R 19651780 exon CG31219 + chr3R 19651828 exon CG31219 + chr3R_6_19650001 chr3R_19650001 RAL-318 1217 chr3R 19702332 19702346 chr3R 19702414 19702428 6 82 8.5 2.5 5.5 0.9 96 chr3R 19702332 intergenic not near genes chr3R 19702380 intergenic not near genes chr3R 19702428 intergenic not near genes chr3R_6_19700001 chr3R_19700001 RAL-318 1218 chr3R 19716230 19716244 chr3R 19716307 19716321 4 77 4.5 0.0 2.2 1.2 91 chr3R 19716230 intergenic CG34286 - chr3R 19716276 intergenic CG34286 - chr3R 19716321 intergenic CG34286 - chr3R_4_19715001 chr3R_19715001 RAL-318 1219 chr3R 19839527 19839560 chr3R 19839759 19839785 9 229 2.0 5.5 3.8 1.9 258 chr3R 19839527 intergenic not near genes chr3R 19839656 intergenic not near genes chr3R 19839785 intergenic not near genes chr3R_9_19835001 chr3R_19835001 RAL-318 1220 chr3R 20041110 20041148 chr3R 20041211 20041239 11 94 3.0 0.0 1.5 4.4 129 chr3R 20041110 intron CG17193 - chr3R 20041174 intron CG17193 - chr3R 20041239 intron CG17193 - chr3R_11_20040001 chr3R_20040001 RAL-318 1221 chr3R 20156705 20156713 chr3R 20165863 20165883 roo 7 9166 5.0 3.0 4.0 1.4 9178 chr3R 20156705 intergenic not near genes chr3R 20161294 intergenic not near genes chr3R 20165883 intergenic not near genes chr3R_7_20160001 chr3R_20160001 RAL-318 1222 chr3R 20197790 20197807 chr3R 20197860 20197886 6 78 2.5 3.0 2.8 1.6 96 chr3R 20197790 intergenic not near genes chr3R 20197838 intergenic not near genes chr3R 20197886 intergenic not near genes chr3R_6_20195001 chr3R_20195001 RAL-318 1223 chr3R 20266521 20266546 chr3R 20272991 20273010 Burdock 5 6469 3.0 3.0 3.0 1.2 6489 chr3R 20266521 intron cic + chr3R 20269766 intron cic + chr3R 20273010 intron cic + chr3R_5_20265001 chr3R_20265001 RAL-318 1224 chr3R 20472720 20472749 chr3R 20472798 20472826 9 74 0.5 5.5 3.0 2.2 106 chr3R 20472720 intron Gfrl - chr3R 20472773 intron Gfrl - chr3R 20472826 intron Gfrl - chr3R_9_20470001 chr3R_20470001 RAL-318 1225 chr3R 20594480 20594511 chr3R 20594570 20594600 5 90 1.5 0.0 0.8 2.8 120 chr3R 20594480 intron bon + chr3R 20594540 intron bon + chr3R 20594600 intron bon + chr3R_5_20590001 chr3R_20590001 RAL-318 1226 chr3R 20596194 20596209 chr3R 20596281 20596296 5 87 0.5 3.5 2.0 1.7 102 chr3R 20596194 intron bon + chr3R 20596245 intron bon + chr3R 20596296 intron bon + chr3R_5_20595001 chr3R_20595001 RAL-318 1227 chr3R 20686964 20686985 chr3R 20687399 20687420 8 432 3.5 3.0 3.2 1.9 456 chr3R 20686964 intergenic not near genes chr3R 20687192 intergenic not near genes chr3R 20687420 intergenic not near genes chr3R_8_20685001 chr3R_20685001 RAL-318 1228 chr3R 20748114 20748136 chr3R 20748188 20748216 10 79 3.0 3.5 3.2 2.4 102 chr3R 20748114 intron CG42322 + chr3R 20748165 intron CG42322 + chr3R 20748216 intron,3` UTR CG42322 +,Prosalpha4T1 - chr3R_10_20745001 chr3R_20745001 RAL-318 1229 chr3R 20787437 20787458 chr3R 20787528 20787549 6 91 3.0 0.5 1.8 2.1 112 chr3R 20787437 intron Syp + chr3R 20787493 intron Syp + chr3R 20787549 intron Syp + chr3R_6_20785001 chr3R_20785001 RAL-318 1230 chr3R 20865776 20865804 chr3R 20865851 20865879 9 77 3.5 4.5 4.0 1.8 103 chr3R 20865776 intron CG3822 - chr3R 20865828 intron CG3822 - chr3R 20865879 intron CG3822 - chr3R_9_20865001 chr3R_20865001 RAL-318 1231 chr3R 20966130 20966146 chr3R 20966213 20966229 5 83 0.0 0.0 0.0 5.0 99 chr3R 20966130 intron Atpalpha + chr3R 20966180 intron Atpalpha + chr3R 20966229 intron Atpalpha + chr3R_5_20965001 chr3R_20965001 RAL-318 1232 chr3R 20998006 20998017 chr3R 20998096 20998107 7 90 0.0 5.5 2.8 1.8 101 chr3R 20998006 intron Calx + chr3R 20998056 intron Calx + chr3R 20998107 intron Calx + chr3R_7_20995001 chr3R_20995001 RAL-318 1233 chr3R 21041101 21041121 chr3R 21041254 21041274 5 152 2.0 1.5 1.8 1.8 173 chr3R 21041101 exon Dhc93AB - chr3R 21041188 intron Dhc93AB - chr3R 21041274 intron Dhc93AB - chr3R_5_21040001 chr3R_21040001 RAL-318 1234 chr3R 21141684 21141689 chr3R 21150161 21150170 Tirant 4 8480 7.0 6.0 6.5 0.5 8486 chr3R 21141684 intron SNF4Agamma + chr3R 21145927 intron SNF4Agamma + chr3R 21150170 intron SNF4Agamma + chr3R_4_21145001 chr3R_21145001 RAL-318 1235 chr3R 21141693 21141706 chr3R 21150160 21150167 Tirant 4 8471 3.0 6.0 4.5 0.7 8474 chr3R 21141693 intron SNF4Agamma + chr3R 21145930 intron SNF4Agamma + chr3R 21150167 intron SNF4Agamma + chr3R_4_21145001 chr3R_21145001 RAL-318 1236 chr3R 21150810 21150832 chr3R 21150945 21150967 7 132 2.0 4.5 3.2 1.7 157 chr3R 21150810 intron SNF4Agamma + chr3R 21150888 intron SNF4Agamma + chr3R 21150967 intron SNF4Agamma + chr3R_7_21150001 chr3R_21150001 RAL-318 1237 chr3R 21163246 21163280 chr3R 21163324 21163357 6 78 0.5 2.0 1.2 2.7 111 chr3R 21163246 intron SNF4Agamma + chr3R 21163302 intron SNF4Agamma + chr3R 21163357 intron SNF4Agamma + chr3R_6_21160001 chr3R_21160001 RAL-318 1238 chr3R 21239807 21239952 chr3R 21239901 21240028 5 82 0.0 0.0 0.0 5.0 221 chr3R 21239807 intergenic not near genes chr3R 21239918 intergenic not near genes chr3R 21240028 intergenic not near genes chr3R_5_21235001 chr3R_21235001 RAL-318 1239 chr3R 21393453 21393459 chr3R 21393575 21393579 5 121 4.5 0.0 2.2 1.6 126 chr3R 21393453 intergenic not near genes chr3R 21393516 intergenic not near genes chr3R 21393579 intergenic not near genes chr3R_5_21390001 chr3R_21390001 RAL-318 1240 chr3R 21472016 21472031 chr3R 21472095 21472112 7 81 2.0 2.5 2.2 2.2 96 chr3R 21472016 intergenic not near genes chr3R 21472064 intergenic not near genes chr3R 21472112 intergenic not near genes chr3R_7_21470001 chr3R_21470001 RAL-318 1241 chr3R 21569836 21569861 chr3R 21569917 21569942 6 81 2.5 1.5 2.0 2.0 106 chr3R 21569836 intergenic InR - chr3R 21569889 intergenic InR - chr3R 21569942 intergenic InR - chr3R_6_21565001 chr3R_21565001 RAL-318 1242 chr3R 21582997 21583015 chr3R 21583098 21583115 6 101 2.5 4.0 3.2 1.4 118 chr3R 21582997 intron InR - chr3R 21583056 intron InR - chr3R 21583115 intron InR - chr3R_6_21580001 chr3R_21580001 RAL-318 1243 chr3R 21586427 21586436 chr3R 21586511 21586515 4 83 4.0 6.0 5.0 0.7 88 chr3R 21586427 intron InR - chr3R 21586471 intron InR - chr3R 21586515 intron InR - chr3R_4_21585001 chr3R_21585001 RAL-318 1244 chr3R 21586441 21586453 chr3R 21586502 21586536 8 77 1.5 3.0 2.2 2.5 95 chr3R 21586441 intron InR - chr3R 21586488 intron InR - chr3R 21586536 intron InR - chr3R_8_21585001 chr3R_21585001 RAL-318 1245 chr3R 21609003 21609040 chr3R 21611636 21611674 NOF 11 2632 3.5 3.5 3.5 2.4 2671 chr3R 21609003 intron InR - chr3R 21610338 intron InR - chr3R 21611674 intron InR - chr3R_11_21610001 chr3R_21610001 RAL-318 1246 chr3R 21635882 21635904 chr3R 21636161 21636181 11 278 3.0 4.5 3.8 2.3 299 chr3R 21635882 intron E2f - chr3R 21636032 intron E2f - chr3R 21636181 intron E2f - chr3R_11_21635001 chr3R_21635001 RAL-318 1247 chr3R 21761126 21761155 chr3R 21768515 21768528 mdg1 8 7384 4.5 5.5 5.0 1.3 7402 chr3R 21761126 exon CG42335 + chr3R 21764827 intron CG42335 + chr3R 21768528 exon CG42335 + chr3R_8_21760001 chr3R_21760001 RAL-318 1248 chr3R 21815255 21815275 chr3R 21815473 21815475 9 215 4.0 8.0 6.0 1.3 220 chr3R 21815255 intron CASK - chr3R 21815365 intron CASK - chr3R 21815475 intron CASK - chr3R_9_21815001 chr3R_21815001 RAL-318 1249 chr3R 21820462 21820494 chr3R 21820565 21820600 7 103 3.0 5.0 4.0 1.4 138 chr3R 21820462 intron CASK - chr3R 21820531 intron CASK - chr3R 21820600 intron CASK - chr3R_7_21820001 chr3R_21820001 RAL-318 1250 chr3R 17389054 17389054 chr3R 21907534 21907534 4 4518480 9.5 24.0 16.8 0.2 4518480 chr3R 17389054 intron,3` UTR Brf -,lute + chr3R 19648294 5` UTR CG6195 - chr3R 21907534 intergenic CG6678 + chr3R_4_19645001 chr3R_19645001 RAL-318 1251 chr3R 21337429 21337429 chr3R 21907534 21907534 6 570105 12.0 24.0 18.0 0.3 570105 chr3R 21337429 intron CG16791 - chr3R 21622482 intron E2f - chr3R 21907534 intergenic CG6678 + chr3R_6_21620001 chr3R_21620001 RAL-318 1252 chr3R 21907534 21907534 chr3R 28831799 28831802 15 6924267 27.0 23.0 25.0 0.6 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_15_25365001 chr3R_25365001 RAL-318 1253 chr3R 19457915 19457919 chr3R 21907535 21907535 4 2449619 4.0 24.0 14.0 0.3 2449620 chr3R 19457915 3` UTR CG31221 + chr3R 20682725 intergenic not near genes chr3R 21907535 intergenic CG6678 + chr3R_4_20680001 chr3R_20680001 RAL-318 1254 chr3R 21907535 21907535 chr3R 28831801 28831802 21 6924266 27.0 24.0 25.5 0.8 6924267 chr3R 21907535 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_21_25365001 chr3R_25365001 RAL-318 1255 chr3R 21337428 21337429 chr3R 21907536 21907536 4 570107 12.0 24.0 18.0 0.2 570108 chr3R 21337428 intron CG16791 - chr3R 21622482 intron E2f - chr3R 21907536 intergenic CG6678 + chr3R_4_21620001 chr3R_21620001 RAL-318 1256 chr3R 21907536 21907536 chr3R 28831799 28831802 26 6924265 27.0 23.0 25.0 1.0 6924266 chr3R 21907536 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831802 intron WASp - chr3R_26_25365001 chr3R_25365001 RAL-318 1257 chr3R 21983135 21983169 chr3R 21983216 21983236 11 78 4.5 6.0 5.2 1.8 101 chr3R 21983135 intron Eip93F + chr3R 21983186 intron Eip93F + chr3R 21983236 intron Eip93F + chr3R_11_21980001 chr3R_21980001 RAL-318 1258 chr3R 22001335 22001350 chr3R 22001597 22001612 4 262 9.5 1.0 5.2 0.6 277 chr3R 22001335 intron Eip93F + chr3R 22001474 intron Eip93F + chr3R 22001612 intron Eip93F + chr3R_4_22000001 chr3R_22000001 RAL-318 1259 chr3R 22041490 22041527 chr3R 22041569 22041606 6 78 2.0 2.0 2.0 2.0 116 chr3R 22041490 intergenic not near genes chr3R 22041548 intergenic not near genes chr3R 22041606 intergenic not near genes chr3R_6_22040001 chr3R_22040001 RAL-318 1260 chr3R 22055559 22055587 chr3R 22055748 22055769 7 185 0.5 2.0 1.2 3.2 210 chr3R 22055559 intron how + chr3R 22055664 intron how + chr3R 22055769 intron how + chr3R_7_22055001 chr3R_22055001 RAL-318 1261 chr3R 22234683 22234706 chr3R 22236002 22236025 pogo 5 1318 2.0 0.5 1.2 2.3 1342 chr3R 22234683 intron SKIP + chr3R 22235354 intron SKIP + chr3R 22236025 intron SKIP + chr3R_5_22235001 chr3R_22235001 RAL-318 1262 chr3R 22337800 22337815 chr3R 22337892 22337914 5 97 4.5 10.0 7.2 0.6 114 chr3R 22337800 intron CG5388 - chr3R 22337857 intron CG5388 - chr3R 22337914 intron CG5388 - chr3R_5_22335001 chr3R_22335001 RAL-318 1263 chr3R 22428578 22428604 chr3R 22428654 22428678 7 75 3.0 2.5 2.8 1.8 100 chr3R 22428578 intron CG13847 - chr3R 22428628 intron CG13847 - chr3R 22428678 intron CG13847 - chr3R_7_22425001 chr3R_22425001 RAL-318 1264 chr3R 22433087 22433108 chr3R 22433185 22433196 5 97 5.5 4.5 5.0 0.8 109 chr3R 22433087 intron CG13847 - chr3R 22433142 intron CG13847 - chr3R 22433196 intron CG13847 - chr3R_5_22430001 chr3R_22430001 RAL-318 1265 chr3R 22450544 22450576 chr3R 22453184 22453216 NOF 18 2636 2.0 6.0 4.0 3.6 2672 chr3R 22450544 intron CG34376 + chr3R 22451880 intron CG34376 + chr3R 22453216 intron CG34376 + chr3R_18_22450001 chr3R_22450001 RAL-318 1266 chr3R 22538445 22538472 chr3R 22538530 22538531 5 80 3.0 4.0 3.5 1.1 86 chr3R 22538445 intron CG5326 - chr3R 22538488 intron CG5326 - chr3R 22538531 intron CG5326 - chr3R_5_22535001 chr3R_22535001 RAL-318 1267 chr3R 22591665 22591692 chr3R 22591745 22591772 5 80 0.5 1.0 0.8 2.8 107 chr3R 22591665 intron Efa6 + chr3R 22591718 intron Efa6 + chr3R 22591772 intron Efa6 + chr3R_5_22590001 chr3R_22590001 RAL-318 1268 chr3R 22769090 22769125 chr3R 22769166 22769189 11 73 4.0 2.5 3.2 2.6 99 chr3R 22769090 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769140 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769189 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R_11_22765001 chr3R_22765001 RAL-318 1269 chr3R 22797764 22797770 chr3R 22797850 22797856 5 85 4.5 0.0 2.2 1.6 92 chr3R 22797764 intergenic not near genes chr3R 22797810 intergenic not near genes chr3R 22797856 intergenic not near genes chr3R_5_22795001 chr3R_22795001 RAL-318 1270 chr3R 22797780 22797938 chr3R 22797845 22798034 11 89 0.0 0.0 0.0 11.0 254 chr3R 22797780 intergenic not near genes chr3R 22797907 intergenic not near genes chr3R 22798034 intergenic not near genes chr3R_11_22795001 chr3R_22795001 RAL-318 1271 chr3R 22842393 22842406 chr3R 22842492 22842504 7 99 6.0 4.0 5.0 1.2 111 chr3R 22842393 intergenic not near genes chr3R 22842448 intergenic not near genes chr3R 22842504 intergenic not near genes chr3R_7_22840001 chr3R_22840001 RAL-318 1272 chr3R 22842409 22842419 chr3R 22842488 22842518 5 94 4.0 3.5 3.8 1.0 109 chr3R 22842409 intergenic not near genes chr3R 22842464 intergenic not near genes chr3R 22842518 intergenic not near genes chr3R_5_22840001 chr3R_22840001 RAL-318 1273 chr3R 22860151 22860176 chr3R 22860243 22860268 5 92 2.0 2.0 2.0 1.7 117 chr3R 22860151 intergenic not near genes chr3R 22860210 intergenic not near genes chr3R 22860268 intergenic not near genes chr3R_5_22860001 chr3R_22860001 RAL-318 1274 chr3R 22867438 22867453 chr3R 22867569 22867584 8 129 6.0 3.5 4.8 1.4 146 chr3R 22867438 intergenic not near genes chr3R 22867511 intergenic not near genes chr3R 22867584 intergenic not near genes chr3R_8_22865001 chr3R_22865001 RAL-318 1275 chr3R 22871448 22871459 chr3R 22871533 22871551 5 94 3.0 2.0 2.5 1.4 103 chr3R 22871448 intergenic not near genes chr3R 22871500 intergenic not near genes chr3R 22871551 intergenic not near genes chr3R_5_22870001 chr3R_22870001 RAL-318 1276 chr3R 22971253 22971273 chr3R 22971340 22971365 10 90 6.0 6.5 6.2 1.4 112 chr3R 22971253 intergenic not near genes chr3R 22971309 intergenic not near genes chr3R 22971365 intergenic not near genes chr3R_10_22970001 chr3R_22970001 RAL-318 1277 chr3R 23073653 23073688 chr3R 23073742 23073777 10 82 2.5 4.5 3.5 2.2 124 chr3R 23073653 intron CG13830 - chr3R 23073715 intron CG13830 - chr3R 23073777 intron CG13830 - chr3R_10_23070001 chr3R_23070001 RAL-318 1278 chr3R 23100423 23100439 chr3R 23100501 23100512 6 76 3.5 3.0 3.2 1.4 89 chr3R 23100423 intron,exon CG13830 -,CG6738 + chr3R 23100468 intron,exon CG13830 -,CG6738 + chr3R 23100512 intron,exon CG13830 -,CG6738 + chr3R_6_23100001 chr3R_23100001 RAL-318 1279 chr3R 23291252 23291262 chr3R 23291338 23291348 5 85 6.5 5.5 6.0 0.7 96 chr3R 23291252 3` UTR pnt - chr3R 23291300 3` UTR pnt - chr3R 23291348 3` UTR pnt - chr3R_5_23290001 chr3R_23290001 RAL-318 1280 chr3R 23291263 23291283 chr3R 23291334 23291369 6 83 3.5 5.0 4.2 1.2 106 chr3R 23291263 3` UTR pnt - chr3R 23291316 3` UTR pnt - chr3R 23291369 exon pnt - chr3R_6_23290001 chr3R_23290001 RAL-318 1281 chr3R 23335438 23335460 chr3R 23335514 23335538 7 77 3.5 2.5 3.0 1.8 100 chr3R 23335438 intron pnt - chr3R 23335488 intron pnt - chr3R 23335538 intron pnt - chr3R_7_23335001 chr3R_23335001 RAL-318 1282 chr3R 23548071 23548095 chr3R 23548376 23548398 5 302 1.0 6.5 3.8 1.0 327 chr3R 23548071 intergenic not near genes chr3R 23548234 intergenic not near genes chr3R 23548398 intergenic not near genes chr3R_5_23545001 chr3R_23545001 RAL-318 1283 chr3R 23572761 23572778 chr3R 23572876 23572898 8 116 2.0 3.5 2.8 2.1 137 chr3R 23572761 intron beat-IV + chr3R 23572830 intron beat-IV + chr3R 23572898 intron beat-IV + chr3R_8_23570001 chr3R_23570001 RAL-318 1284 chr3R 23629817 23629852 chr3R 23629894 23629914 11 77 6.0 4.0 5.0 1.8 97 chr3R 23629817 intron CG31145 - chr3R 23629866 intron CG31145 - chr3R 23629914 intron CG31145 - chr3R_11_23625001 chr3R_23625001 RAL-318 1285 chr3R 23684698 23684728 chr3R 23685183 23685186 roo 4 476 5.0 3.5 4.2 0.8 488 chr3R 23684698 exon CG18754 + chr3R 23684942 intron CG18754 + chr3R 23685186 exon CG18754 + chr3R_4_23680001 chr3R_23680001 RAL-318 1286 chr3R 23719189 23719221 chr3R 23719663 23719692 12 473 0.0 3.5 1.8 4.3 503 chr3R 23719189 intergenic CG10232 - chr3R 23719440 3` UTR CG10232 - chr3R 23719692 exon CG10232 - chr3R_12_23715001 chr3R_23715001 RAL-318 1287 chr3R 23808478 23808499 chr3R 23808600 23808622 5 124 4.0 4.0 4.0 1.0 144 chr3R 23808478 intron,intron,3` UTR CG33111 -,CG34355 +,eIF4G2 - chr3R 23808550 intron,intron,3` UTR CG33111 -,CG34355 +,eIF4G2 - chr3R 23808622 intron,intron,3` UTR CG33111 -,CG34355 +,eIF4G2 - chr3R_5_23805001 chr3R_23805001 RAL-318 1288 chr3R 23944915 23944930 chr3R 23945000 23945014 6 85 2.0 5.5 3.8 1.2 99 chr3R 23944915 intron CG12268 - chr3R 23944964 intron CG12268 - chr3R 23945014 intron CG12268 - chr3R_6_23940001 chr3R_23940001 RAL-318 1289 chr3R 24025597 24025603 chr3R 24025656 24025682 6 69 2.0 2.5 2.2 1.9 85 chr3R 24025597 intron KrT95D - chr3R 24025640 intron KrT95D - chr3R 24025682 intron KrT95D - chr3R_6_24025001 chr3R_24025001 RAL-318 1290 chr3R 24072090 24072096 chr3R 24072527 24072534 jockey 4 438 9.0 0.5 4.8 0.7 444 chr3R 24072090 intron 4EHP - chr3R 24072312 intron 4EHP - chr3R 24072534 intron 4EHP - chr3R_4_24070001 chr3R_24070001 RAL-318 1291 chr3R 24076922 24076941 chr3R 24078388 24078408 hobo 5 1467 5.5 4.5 5.0 0.8 1486 chr3R 24076922 intron 4EHP - chr3R 24077665 intron 4EHP - chr3R 24078408 intron 4EHP - chr3R_5_24075001 chr3R_24075001 RAL-318 1292 chr3R 24076942 24076948 chr3R 24078387 24078412 hobo 4 1454 4.5 4.5 4.5 0.7 1470 chr3R 24076942 intron 4EHP - chr3R 24077677 intron 4EHP - chr3R 24078412 intron 4EHP - chr3R_4_24075001 chr3R_24075001 RAL-318 1293 chr3R 24207218 24207243 chr3R 24212294 24212319 flea 4 5075 6.5 3.5 5.0 0.7 5101 chr3R 24207218 intron twin - chr3R 24209768 intron twin - chr3R 24212319 intron twin - chr3R_4_24205001 chr3R_24205001 RAL-318 1294 chr3R 24424655 24424675 chr3R 24424801 24424821 18 144 3.5 7.0 5.2 2.9 166 chr3R 24424655 intron nAChRalpha1 - chr3R 24424738 intron nAChRalpha1 - chr3R 24424821 intron nAChRalpha1 - chr3R_18_24420001 chr3R_24420001 RAL-318 1295 chr3R 24426287 24426314 chr3R 24426544 24426549 8 254 5.5 3.5 4.5 1.5 262 chr3R 24426287 intron nAChRalpha1 - chr3R 24426418 intron nAChRalpha1 - chr3R 24426549 intron nAChRalpha1 - chr3R_8_24425001 chr3R_24425001 RAL-318 1296 chr3R 24433479 24433504 chr3R 24433558 24433561 6 74 1.5 1.5 1.5 2.4 82 chr3R 24433479 intron nAChRalpha1 - chr3R 24433520 intron nAChRalpha1 - chr3R 24433561 intron nAChRalpha1 - chr3R_6_24430001 chr3R_24430001 RAL-318 1297 chr3R 24493290 24493310 chr3R 24493520 24493539 BS 4 227 0.0 3.5 1.8 1.4 249 chr3R 24493290 intergenic not near genes chr3R 24493414 intergenic not near genes chr3R 24493539 intergenic not near genes chr3R_4_24490001 chr3R_24490001 RAL-318 1298 chr3R 24527812 24527827 chr3R 24527903 24527918 5 91 0.5 3.0 1.8 1.8 106 chr3R 24527812 intergenic CG6607 +,CG13618 + chr3R 24527865 intergenic CG6607 +,CG13618 + chr3R 24527918 intergenic CG6607 +,CG13618 + chr3R_5_24525001 chr3R_24525001 RAL-318 1299 chr3R 24730096 24730112 chr3R 24732467 24732489 Doc 6 2376 4.5 1.5 3.0 1.5 2393 chr3R 24730096 intron tok + chr3R 24731292 intron tok + chr3R 24732489 intron tok + chr3R_6_24730001 chr3R_24730001 RAL-318 1300 chr3R 24785082 24785113 chr3R 24785158 24785189 7 74 2.0 3.0 2.5 2.0 107 chr3R 24785082 3` UTR CG5805 - chr3R 24785136 3` UTR CG5805 - chr3R 24785189 3` UTR CG5805 - chr3R_7_24785001 chr3R_24785001 RAL-318 1301 chr3R 24927134 24927150 chr3R 24931922 24931941 Doc 7 4790 3.0 2.5 2.8 1.8 4807 chr3R 24927134 intergenic Trf4-2 + chr3R 24929538 intergenic not near genes chr3R 24931941 intergenic CG11771 + chr3R_7_24925001 chr3R_24925001 RAL-318 1302 chr3R 24973953 24973983 chr3R 24974022 24974036 13 73 3.5 4.0 3.8 2.7 83 chr3R 24973953 intergenic not near genes chr3R 24973994 intergenic not near genes chr3R 24974036 intergenic not near genes chr3R_13_24970001 chr3R_24970001 RAL-318 1303 chr3R 25046824 25046838 chr3R 25046901 25046915 4 77 4.5 6.0 5.2 0.6 91 chr3R 25046824 exon CG11786 + chr3R 25046870 exon CG11786 + chr3R 25046915 exon CG11786 + chr3R_4_25045001 chr3R_25045001 RAL-318 1304 chr3R 25064540 25064561 chr3R 25064638 25064659 8 97 3.5 5.5 4.5 1.5 119 chr3R 25064540 3` UTR veli - chr3R 25064600 3` UTR veli - chr3R 25064659 exon veli - chr3R_8_25060001 chr3R_25060001 RAL-318 1305 chr3R 25209600 25209630 chr3R 25209681 25209712 9 81 1.5 3.0 2.2 2.8 112 chr3R 25209600 intron CG13654 + chr3R 25209656 intron CG13654 + chr3R 25209712 intron CG13654 + chr3R_9_25205001 chr3R_25205001 RAL-318 1306 chr3R 25801271 25801293 chr3R 25802255 25802262 10 982 0.5 4.0 2.2 3.1 991 chr3R 25801271 intergenic not near genes chr3R 25801766 intergenic not near genes chr3R 25802262 intergenic not near genes chr3R_10_25800001 chr3R_25800001 RAL-318 1307 chr3R 25810311 25810341 chr3R 25810410 25810436 13 98 2.5 2.0 2.2 4.1 125 chr3R 25810311 intergenic not near genes chr3R 25810374 intergenic not near genes chr3R 25810436 intergenic not near genes chr3R_13_25810001 chr3R_25810001 RAL-318 1308 chr3R 25832690 25832718 chr3R 25841871 25841899 roo 6 9178 3.5 3.0 3.2 1.4 9209 chr3R 25832690 exon alpha4GT2 + chr3R 25837294 intron alpha4GT2 + chr3R 25841899 exon alpha4GT2 + chr3R_6_25835001 chr3R_25835001 RAL-318 1309 chr3R 25843641 25843661 chr3R 25843771 25843791 4 130 0.5 1.5 1.0 2.0 150 chr3R 25843641 intergenic CR45653 + chr3R 25843716 intergenic CR45653 + chr3R 25843791 intergenic CR45653 + chr3R_4_25840001 chr3R_25840001 RAL-318 1310 chr3R 25847693 25847724 chr3R 25847855 25847888 9 163 2.0 4.5 3.2 2.1 195 chr3R 25847693 intergenic CR45656 -,CR45657 + chr3R 25847790 intergenic CR45656 -,CR45657 + chr3R 25847888 intergenic CR45657 +,CR45656 - chr3R_9_25845001 chr3R_25845001 RAL-318 1311 chr3R 25869209 25869240 chr3R 25869403 25869408 13 188 3.0 4.0 3.5 2.9 199 chr3R 25869209 intron CG5890 + chr3R 25869308 intron CG5890 + chr3R 25869408 intron CG5890 + chr3R_13_25865001 chr3R_25865001 RAL-318 1312 chr3R 25900877 25900912 chr3R 25903597 25903629 14 2718 35.5 31.0 33.2 0.4 2752 chr3R 25900877 exon CG31091 + chr3R 25902253 intergenic CG31091 +,CG31089 + chr3R 25903629 exon,intron CG31089 +,CR43259 - chr3R_14_25900001 chr3R_25900001 RAL-318 1313 chr3R 25948756 25948786 chr3R 25948846 25948859 7 87 2.5 1.0 1.8 2.5 103 chr3R 25948756 intron CCAP-R - chr3R 25948808 intron CCAP-R - chr3R 25948859 intron CCAP-R - chr3R_7_25945001 chr3R_25945001 RAL-318 1314 chr3R 26122219 26122479 chr3R 26122321 26122549 7 81 7.5 5.0 6.2 1.0 330 chr3R 26122219 intron CG31324 + chr3R 26122384 intron CG31324 + chr3R 26122549 intron CG31324 + chr3R_7_26120001 chr3R_26120001 RAL-318 1315 chr3R 26126267 26126288 chr3R 26126372 26126392 9 103 5.0 1.0 3.0 2.2 125 chr3R 26126267 intron CG31324 + chr3R 26126330 intron CG31324 + chr3R 26126392 intron CG31324 + chr3R_9_26125001 chr3R_26125001 RAL-318 1316 chr3R 26235498 26235522 chr3R 26235579 26235604 9 74 1.0 5.0 3.0 2.2 106 chr3R 26235498 5` UTR CR42745 + chr3R 26235551 5` UTR CR42745 + chr3R 26235604 5` UTR CR42745 + chr3R_9_26235001 chr3R_26235001 RAL-318 1317 chr3R 26240459 26240486 chr3R 26240604 26240629 11 145 0.5 5.0 2.8 2.9 170 chr3R 26240459 intron CR42745 + chr3R 26240544 intron CR42745 + chr3R 26240629 intron CR42745 + chr3R_11_26240001 chr3R_26240001 RAL-318 1318 chr3R 26294717 26294749 chr3R 26294795 26294826 10 71 1.5 1.5 1.5 4.0 109 chr3R 26294717 intergenic not near genes chr3R 26294772 intergenic not near genes chr3R 26294826 intergenic not near genes chr3R_10_26290001 chr3R_26290001 RAL-318 1319 chr3R 26325363 26325384 chr3R 26325450 26325462 6 85 5.0 0.0 2.5 1.7 99 chr3R 26325363 intron CG33970 + chr3R 26325412 intron CG33970 + chr3R 26325462 intron CG33970 + chr3R_6_26325001 chr3R_26325001 RAL-318 1320 chr3R 26332559 26332577 chr3R 26332701 26332719 4 140 2.0 3.0 2.5 1.1 160 chr3R 26332559 intron CG33970 + chr3R 26332639 intron CG33970 + chr3R 26332719 intron CG33970 + chr3R_4_26330001 chr3R_26330001 RAL-318 1321 chr3R 26339229 26339258 chr3R 26339323 26339331 6 88 4.5 1.0 2.8 1.6 102 chr3R 26339229 intron CG33970 + chr3R 26339280 intron CG33970 + chr3R 26339331 intron CG33970 + chr3R_6_26335001 chr3R_26335001 RAL-318 1322 chr3R 26376330 26376355 chr3R 26385489 26385489 roo 5 9154 3.0 0.5 1.8 1.8 9159 chr3R 26376330 intergenic not near genes chr3R 26380910 intergenic not near genes chr3R 26385489 intergenic not near genes chr3R_5_26380001 chr3R_26380001 RAL-318 1323 chr3R 26390469 26390486 chr3R 26390563 26390581 4 93 2.5 3.0 2.8 1.1 112 chr3R 26390469 intergenic not near genes chr3R 26390525 intergenic not near genes chr3R 26390581 intergenic not near genes chr3R_4_26390001 chr3R_26390001 RAL-318 1324 chr3R 26558332 26558360 chr3R 26565640 26565672 Stalker4 7 7308 3.5 2.5 3.0 1.8 7340 chr3R 26558332 intron scrib + chr3R 26562002 intron scrib + chr3R 26565672 intron scrib + chr3R_7_26560001 chr3R_26560001 RAL-318 1325 chr3R 26616041 26616071 chr3R 26616159 26616185 17 115 2.5 4.0 3.2 4.0 144 chr3R 26616041 intergenic not near genes chr3R 26616113 intergenic not near genes chr3R 26616185 intergenic not near genes chr3R_17_26615001 chr3R_26615001 RAL-318 1326 chr3R 26642741 26642761 chr3R 26643123 26643155 jockey 7 392 0.5 1.0 0.8 3.9 414 chr3R 26642741 intergenic not near genes chr3R 26642948 intergenic not near genes chr3R 26643155 intergenic not near genes chr3R_7_26640001 chr3R_26640001 RAL-318 1327 chr3R 26685860 26685887 chr3R 26686040 26686067 4 180 2.5 1.0 1.8 1.4 207 chr3R 26685860 intergenic not near genes chr3R 26685964 intergenic not near genes chr3R 26686067 intergenic not near genes chr3R_4_26685001 chr3R_26685001 RAL-318 1328 chr3R 26691387 26691408 chr3R 26691464 26691474 9 75 2.5 4.0 3.2 2.1 87 chr3R 26691387 intergenic not near genes chr3R 26691430 intergenic not near genes chr3R 26691474 intergenic not near genes chr3R_9_26690001 chr3R_26690001 RAL-318 1329 chr3R 26755699 26755722 chr3R 26755771 26755774 7 72 3.0 0.5 1.8 2.5 75 chr3R 26755699 intergenic not near genes chr3R 26755736 intergenic not near genes chr3R 26755774 intergenic not near genes chr3R_7_26755001 chr3R_26755001 RAL-318 1330 chr3R 26870430 26870453 chr3R 26870785 26870808 5 353 2.5 22.0 12.2 0.4 378 chr3R 26870430 intron BM-40-SPARC - chr3R 26870619 intron BM-40-SPARC - chr3R 26870808 intron BM-40-SPARC - chr3R_5_26870001 chr3R_26870001 RAL-318 1331 chr3R 26870528 26870530 chr3R 26870853 26870887 7 330 6.5 26.5 16.5 0.4 359 chr3R 26870528 intron BM-40-SPARC - chr3R 26870708 intron BM-40-SPARC - chr3R 26870887 intron BM-40-SPARC - chr3R_7_26870001 chr3R_26870001 RAL-318 1332 chr3R 27028721 27028755 chr3R 27028800 27028834 6 79 0.5 1.5 1.0 3.0 113 chr3R 27028721 intron RYa-R + chr3R 27028778 intron RYa-R + chr3R 27028834 intron RYa-R + chr3R_6_27025001 chr3R_27025001 RAL-318 1333 chr3R 27071416 27071441 chr3R 27071732 27071756 5 316 3.0 2.5 2.8 1.3 340 chr3R 27071416 intergenic not near genes chr3R 27071586 intergenic not near genes chr3R 27071756 intergenic not near genes chr3R_5_27070001 chr3R_27070001 RAL-318 1334 chr3R 27101549 27101564 chr3R 27101655 27101670 4 106 3.0 6.0 4.5 0.7 121 chr3R 27101549 exon CG17189 + chr3R 27101610 intron CG17189 + chr3R 27101670 intron CG17189 + chr3R_4_27100001 chr3R_27100001 RAL-318 1335 chr3R 27107168 27107194 chr3R 27107392 27107418 6 224 1.0 3.0 2.0 2.0 250 chr3R 27107168 intergenic not near genes chr3R 27107293 intergenic not near genes chr3R 27107418 intergenic not near genes chr3R_6_27105001 chr3R_27105001 RAL-318 1336 chr3R 27140523 27140548 chr3R 27148125 27148158 412 12 7606 4.5 4.5 4.5 2.2 7635 chr3R 27140523 intron CG6051 - chr3R 27144340 intron CG6051 - chr3R 27148158 intron CG6051 - chr3R_12_27140001 chr3R_27140001 RAL-318 1337 chr3R 27152373 27152406 chr3R 27152459 27152491 10 85 4.0 3.0 3.5 2.2 118 chr3R 27152373 intron Men-b + chr3R 27152432 intron Men-b + chr3R 27152491 intron Men-b + chr3R_10_27150001 chr3R_27150001 RAL-318 1338 chr3R 27245601 27245614 chr3R 27245687 27245699 8 88 3.0 7.0 5.0 1.3 98 chr3R 27245601 intergenic CG18766 - chr3R 27245650 intergenic CG18766 - chr3R 27245699 intergenic CG18766 - chr3R_8_27245001 chr3R_27245001 RAL-318 1339 chr3R 27300860 27300875 chr3R 27300952 27300967 7 91 3.0 5.5 4.2 1.3 107 chr3R 27300860 intron CG3339 - chr3R 27300914 intron CG3339 - chr3R 27300967 intron CG3339 - chr3R_7_27300001 chr3R_27300001 RAL-318 1340 chr3R 27342797 27342826 chr3R 27351377 27351407 Tirant 10 8579 1.5 3.5 2.5 2.9 8610 chr3R 27342797 intron CG42534 + chr3R 27347102 intron CG42534 + chr3R 27351407 intron CG42534 + chr3R_10_27345001 chr3R_27345001 RAL-318 1341 chr3R 27447346 27447374 chr3R 27447476 27447503 10 129 2.0 4.5 3.2 2.4 157 chr3R 27447346 intergenic not near genes chr3R 27447424 intergenic not near genes chr3R 27447503 intergenic not near genes chr3R_10_27445001 chr3R_27445001 RAL-318 1342 chr3R 27449178 27449201 chr3R 27449257 27449280 9 79 3.0 2.5 2.8 2.4 102 chr3R 27449178 intergenic not near genes chr3R 27449229 intergenic not near genes chr3R 27449280 intergenic not near genes chr3R_9_27445001 chr3R_27445001 RAL-318 1343 chr3R 27645893 27645918 chr3R 27645966 27645994 4 75 1.5 2.0 1.8 1.4 101 chr3R 27645893 intron tau - chr3R 27645944 intron tau - chr3R 27645994 intron tau - chr3R_4_27645001 chr3R_27645001 RAL-318 1344 chr3R 27706786 27706809 chr3R 27706859 27706886 5 76 1.5 2.0 1.8 1.8 100 chr3R 27706786 intergenic CG12428 -,CG12877 + chr3R 27706836 intergenic CG12428 -,CG12877 + chr3R 27706886 intergenic CG12428 -,CG12877 + chr3R_5_27705001 chr3R_27705001 RAL-318 1345 chr3R 27725564 27725595 chr3R 27731002 27731037 I-element 10 5441 1.5 2.5 2.0 3.3 5473 chr3R 27725564 intergenic not near genes chr3R 27728300 intergenic not near genes chr3R 27731037 intergenic not near genes chr3R_10_27725001 chr3R_27725001 RAL-318 1346 chr3R 27779280 27779286 chr3R 27779349 27779366 5 78 2.5 3.5 3.0 1.2 86 chr3R 27779280 exon CG34353 - chr3R 27779323 intron CG34353 - chr3R 27779366 intron CG34353 - chr3R_5_27775001 chr3R_27775001 RAL-318 1347 chr3R 27843409 27843435 chr3R 27843562 27843567 12 159 2.0 3.5 2.8 3.2 158 chr3R 27843409 intron CG34353 - chr3R 27843488 intron CG34353 - chr3R 27843567 intron CG34353 - chr3R_12_27840001 chr3R_27840001 RAL-318 1348 chr3R 27856759 27856793 chr3R 27858242 27858276 hopper2 14 1482 5.5 1.5 3.5 3.1 1517 chr3R 27856759 intron CG34353 - chr3R 27857518 intron CG34353 - chr3R 27858276 intron CG34353 - chr3R_14_27855001 chr3R_27855001 RAL-318 1349 chr3R 27862955 27862983 chr3R 27868260 27868288 Transpac 8 5304 2.5 2.0 2.2 2.5 5333 chr3R 27862955 intron CG34353 - chr3R 27865622 intron CG34353 - chr3R 27868288 intron CG34353 - chr3R_8_27865001 chr3R_27865001 RAL-318 1350 chr3R 27875704 27875730 chr3R 27882759 27882784 297 7 7053 7.0 1.5 4.2 1.3 7080 chr3R 27875704 intron CG34353 - chr3R 27879244 intron CG34353 - chr3R 27882784 intron CG34353 - chr3R_7_27875001 chr3R_27875001 RAL-318 1351 chr3R 27973866 27973882 chr3R 27973947 27973958 6 77 1.5 5.0 3.2 1.4 92 chr3R 27973866 intron betaTub97EF - chr3R 27973912 intron betaTub97EF - chr3R 27973958 intron betaTub97EF - chr3R_6_27970001 chr3R_27970001 RAL-318 1352 chr3R 27996738 27996775 chr3R 27996850 27996887 10 111 2.5 5.0 3.8 2.1 149 chr3R 27996738 intergenic not near genes chr3R 27996812 intergenic not near genes chr3R 27996887 intergenic not near genes chr3R_10_27995001 chr3R_27995001 RAL-318 1353 chr3R 28005259 28005279 chr3R 28005611 28005631 12 352 1.5 3.5 2.5 3.4 372 chr3R 28005259 intergenic not near genes chr3R 28005445 intergenic not near genes chr3R 28005631 intergenic not near genes chr3R_12_28005001 chr3R_28005001 RAL-318 1354 chr3R 28006037 28006069 chr3R 28006115 28006147 14 77 2.5 2.0 2.2 4.4 110 chr3R 28006037 intergenic not near genes chr3R 28006092 intergenic not near genes chr3R 28006147 intergenic not near genes chr3R_14_28005001 chr3R_28005001 RAL-318 1355 chr3R 28017971 28017984 chr3R 28018037 28018074 8 85 1.0 5.0 3.0 2.0 103 chr3R 28017971 intergenic not near genes chr3R 28018022 intergenic not near genes chr3R 28018074 intergenic not near genes chr3R_8_28015001 chr3R_28015001 RAL-318 1356 chr3R 28054447 28054475 chr3R 28054523 28054550 6 76 4.0 2.0 3.0 1.5 103 chr3R 28054447 intron CG34362 + chr3R 28054498 intron CG34362 + chr3R 28054550 intron CG34362 + chr3R_6_28050001 chr3R_28050001 RAL-318 1357 chr3R 28068508 28068526 chr3R 28073940 28073968 I-element 7 5437 1.0 3.5 2.2 2.2 5460 chr3R 28068508 intron CG34362 + chr3R 28071238 intron CG34362 + chr3R 28073968 intron CG34362 + chr3R_7_28070001 chr3R_28070001 RAL-318 1358 chr3R 28132492 28132512 chr3R 28132574 28132578 6 79 3.5 3.5 3.5 1.3 86 chr3R 28132492 intergenic not near genes chr3R 28132535 intergenic not near genes chr3R 28132578 intergenic not near genes chr3R_6_28130001 chr3R_28130001 RAL-318 1359 chr3R 28253344 28253364 chr3R 28255854 28255874 jockey 12 2510 2.0 5.0 3.5 2.7 2530 chr3R 28253344 intergenic not near genes chr3R 28254609 intergenic not near genes chr3R 28255874 intergenic not near genes chr3R_12_28250001 chr3R_28250001 RAL-318 1360 chr3R 28286318 28286350 chr3R 28286406 28286420 11 83 2.0 3.5 2.8 2.9 102 chr3R 28286318 intergenic not near genes chr3R 28286369 intergenic not near genes chr3R 28286420 intergenic not near genes chr3R_11_28285001 chr3R_28285001 RAL-318 1361 chr3R 28316456 28316477 chr3R 28316957 28316957 6 496 1.0 2.0 1.5 2.4 501 chr3R 28316456 intergenic not near genes chr3R 28316706 intergenic not near genes chr3R 28316957 intergenic not near genes chr3R_6_28315001 chr3R_28315001 RAL-318 1362 chr3R 28417448 28417484 chr3R 28417534 28417556 17 78 3.0 1.5 2.2 5.3 108 chr3R 28417448 intergenic not near genes chr3R 28417502 intergenic not near genes chr3R 28417556 intergenic not near genes chr3R_17_28415001 chr3R_28415001 RAL-318 1363 chr3R 28484354 28484375 chr3R 28486271 28486292 5 1917 14.0 19.5 16.8 0.3 1938 chr3R 28484354 intergenic CG1894 + chr3R 28485323 exon CG1894 + chr3R 28486292 intergenic CG1894 + chr3R_5_28485001 chr3R_28485001 RAL-318 1364 chr3R 28506608 28506622 chr3R 28506687 28506702 4 76 6.5 2.5 4.5 0.7 94 chr3R 28506608 exon Dhc98D + chr3R 28506655 intron Dhc98D + chr3R 28506702 intron Dhc98D + chr3R_4_28505001 chr3R_28505001 RAL-318 1365 chr3R 28506623 28506641 chr3R 28506686 28506695 8 72 4.0 2.5 3.2 1.9 72 chr3R 28506623 exon Dhc98D + chr3R 28506659 intron Dhc98D + chr3R 28506695 intron Dhc98D + chr3R_8_28505001 chr3R_28505001 RAL-318 1366 chr3R 28625478 28625511 chr3R 28625569 28625602 10 89 4.5 5.0 4.8 1.7 124 chr3R 28625478 intron CG10011 - chr3R 28625540 intron CG10011 - chr3R 28625602 intron CG10011 - chr3R_10_28625001 chr3R_28625001 RAL-318 1367 chr3R 28637927 28637950 chr3R 28639557 28639564 4 1618 25.0 23.5 24.2 0.2 1637 chr3R 28637927 exon CG9988 + chr3R 28638746 3` UTR CG9988 + chr3R 28639564 intergenic not near genes chr3R_4_28635001 chr3R_28635001 RAL-318 1368 chr3R 28702931 28702961 chr3R 28703015 28703045 10 83 3.5 4.0 3.8 2.1 114 chr3R 28702931 intron htt + chr3R 28702988 intron htt + chr3R 28703045 intron htt + chr3R_10_28700001 chr3R_28700001 RAL-318 1369 chr3R 28753311 28753332 chr3R 28755114 28755135 10 1802 1.5 3.0 2.2 3.1 1824 chr3R 28753311 intergenic not near genes chr3R 28754223 intergenic not near genes chr3R 28755135 intergenic CG9997 - chr3R_10_28750001 chr3R_28750001 RAL-318 1370 chr3R 28785388 28785408 chr3R 28785473 28785490 8 83 4.5 3.5 4.0 1.6 102 chr3R 28785388 intergenic not near genes chr3R 28785439 intergenic not near genes chr3R 28785490 intergenic not near genes chr3R_8_28785001 chr3R_28785001 RAL-318 1371 chr3R 28792871 28792880 chr3R 28797966 28797975 jockey 5 5094 6.5 4.0 5.2 0.8 5104 chr3R 28792871 intergenic not near genes chr3R 28795423 intergenic not near genes chr3R 28797975 intergenic not near genes chr3R_5_28795001 chr3R_28795001 RAL-318 1372 chr3R 21907534 21907536 chr3R 28831801 28831801 35 6924266 27.0 24.0 25.5 1.3 6924267 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831801 intron WASp - chr3R_35_25365001 chr3R_25365001 RAL-318 1373 chr3R 21907534 21907536 chr3R 28831802 28831802 48 6924267 27.0 23.5 25.2 1.8 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_48_25365001 chr3R_25365001 RAL-318 1374 chr3R 28899698 28899720 chr3R 28899783 28899809 8 87 3.5 5.5 4.5 1.5 111 chr3R 28899698 intron Doa + chr3R 28899754 intron Doa + chr3R 28899809 intron Doa + chr3R_8_28895001 chr3R_28895001 RAL-318 1375 chr3R 28942497 28942521 chr3R 28942611 28942635 7 112 3.0 6.5 4.8 1.2 138 chr3R 28942497 intron CG14521 - chr3R 28942566 intron CG14521 - chr3R 28942635 intron CG14521 - chr3R_7_28940001 chr3R_28940001 RAL-318 1376 chr3R 29009954 29009987 chr3R 29010060 29010093 11 106 1.5 2.0 1.8 3.9 139 chr3R 29009954 intron wat - chr3R 29010024 intron wat - chr3R 29010093 intron wat - chr3R_11_29010001 chr3R_29010001 RAL-318 1377 chr3R 21907534 21907535 chr3R 29013340 29013340 10 7105805 27.0 9.5 18.2 0.5 7105806 chr3R 21907534 intergenic CG6678 + chr3R 25460437 intron Fur1 - chr3R 29013340 intron wat - chr3R_10_25460001 chr3R_25460001 RAL-318 1378 chr3R 29032749 29032778 chr3R 29032826 29032847 8 72 5.0 5.5 5.2 1.3 98 chr3R 29032749 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R 29032798 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R 29032847 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R_8_29030001 chr3R_29030001 RAL-318 1379 chr3R 29079385 29079411 chr3R 29080757 29080783 NOF 5 1372 2.0 2.5 2.2 1.6 1398 chr3R 29079385 intron CG11873 + chr3R 29080084 intron CG11873 + chr3R 29080783 intron CG11873 + chr3R_5_29080001 chr3R_29080001 RAL-318 1380 chr3R 29192905 29192937 chr3R 29193215 29193248 13 306 5.0 0.5 2.8 3.4 343 chr3R 29192905 intron CG14509 - chr3R 29193076 intron CG14509 - chr3R 29193248 intron CG14509 - chr3R_13_29190001 chr3R_29190001 RAL-318 1381 chr3R 29237250 29237281 chr3R 29239270 29239302 10 2021 18.5 4.0 11.2 0.8 2052 chr3R 29237250 exon CG11951 - chr3R 29238276 intron CG11951 - chr3R 29239302 exon CG31427 - chr3R_10_29235001 chr3R_29235001 RAL-318 1382 chr3R 29237942 29237964 chr3R 29238150 29238172 6 208 2.0 2.5 2.2 1.9 230 chr3R 29237942 exon CG11951 - chr3R 29238057 exon CG11951 - chr3R 29238172 intron CG11951 - chr3R_6_29235001 chr3R_29235001 RAL-318 1383 chr3R 29249625 29249652 chr3R 29249712 29249739 8 87 0.5 2.0 1.2 3.6 114 chr3R 29249625 intron SP1029 - chr3R 29249682 intron SP1029 - chr3R 29249739 intron SP1029 - chr3R_8_29245001 chr3R_29245001 RAL-318 1384 chr3R 29256276 29256298 chr3R 29256344 29256374 9 76 2.5 1.0 1.8 3.2 98 chr3R 29256276 intergenic CG45544 +,stg - chr3R 29256325 intergenic CG45544 + chr3R 29256374 intergenic CG45544 + chr3R_9_29255001 chr3R_29255001 RAL-318 1385 chr3R 29292048 29292077 chr3R 29292129 29292157 4 80 1.5 2.0 1.8 1.4 109 chr3R 29292048 intergenic not near genes chr3R 29292102 intergenic not near genes chr3R 29292157 intergenic not near genes chr3R_4_29290001 chr3R_29290001 RAL-318 1386 chr3R 29355958 29355989 chr3R 29356037 29356069 8 79 1.5 1.5 1.5 3.2 111 chr3R 29355958 intergenic CR45547 - chr3R 29356014 intergenic CR45547 - chr3R 29356069 intergenic CR45547 - chr3R_8_29355001 chr3R_29355001 RAL-318 1387 chr3R 29406637 29406649 chr3R 29407905 29407912 jockey 5 1273 2.5 4.5 3.5 1.1 1275 chr3R 29406637 intron Ptp99A + chr3R 29407274 intron Ptp99A + chr3R 29407912 intron Ptp99A + chr3R_5_29405001 chr3R_29405001 RAL-318 1388 chr3R 29449358 29449390 chr3R 29449436 29449462 7 74 0.5 1.0 0.8 3.9 104 chr3R 29449358 intron Ptp99A + chr3R 29449410 intron Ptp99A + chr3R 29449462 intron Ptp99A + chr3R_7_29445001 chr3R_29445001 RAL-318 1389 chr3R 29451591 29451622 chr3R 29451673 29451701 7 79 0.5 4.0 2.2 2.2 110 chr3R 29451591 intron Ptp99A + chr3R 29451646 intron Ptp99A + chr3R 29451701 intron Ptp99A + chr3R_7_29450001 chr3R_29450001 RAL-318 1390 chr3R 29472008 29472034 chr3R 29472100 29472127 10 91 3.0 2.5 2.8 2.6 119 chr3R 29472008 intron Ptp99A + chr3R 29472068 intron Ptp99A + chr3R 29472127 intron Ptp99A + chr3R_10_29470001 chr3R_29470001 RAL-318 1391 chr3R 29508831 29508840 chr3R 29509021 29509030 4 190 0.0 2.0 1.0 2.0 199 chr3R 29508831 intergenic not near genes chr3R 29508930 intergenic not near genes chr3R 29509030 intergenic not near genes chr3R_4_29505001 chr3R_29505001 RAL-318 1392 chr3R 29590376 29590396 chr3R 29590469 29590486 14 92 2.5 6.0 4.2 2.7 110 chr3R 29590376 intron CG31041 - chr3R 29590431 intron CG31041 - chr3R 29590486 intron CG31041 - chr3R_14_29590001 chr3R_29590001 RAL-318 1393 chr3R 29624121 29624143 chr3R 29624201 29624221 6 78 2.0 4.5 3.2 1.4 100 chr3R 29624121 intergenic not near genes chr3R 29624171 intergenic not near genes chr3R 29624221 intergenic not near genes chr3R_6_29620001 chr3R_29620001 RAL-318 1394 chr3R 29627168 29627182 chr3R 29627871 29627883 7 702 2.0 3.0 2.5 2.0 715 chr3R 29627168 intergenic not near genes chr3R 29627526 intergenic not near genes chr3R 29627883 intergenic not near genes chr3R_7_29625001 chr3R_29625001 RAL-318 1395 chr3R 29663058 29663086 chr3R 29663342 29663370 12 284 2.0 7.0 4.5 2.2 312 chr3R 29663058 intergenic not near genes chr3R 29663214 intergenic not near genes chr3R 29663370 intergenic not near genes chr3R_12_29660001 chr3R_29660001 RAL-318 1396 chr3R 29681334 29681358 chr3R 29681545 29681568 9 209 5.5 3.0 4.2 1.7 234 chr3R 29681334 intron CG7582 - chr3R 29681451 intron CG7582 - chr3R 29681568 intron CG7582 - chr3R_9_29680001 chr3R_29680001 RAL-318 1397 chr3R 29718155 29718175 chr3R 29718231 29718250 6 76 1.5 3.0 2.2 1.9 95 chr3R 29718155 intergenic not near genes chr3R 29718202 intergenic CG15506 + chr3R 29718250 intergenic CG15506 + chr3R_6_29715001 chr3R_29715001 RAL-318 1398 chr3R 29754983 29754988 chr3R 29755060 29755065 5 77 0.0 3.5 1.8 1.8 82 chr3R 29754983 intergenic CR44953 -,yata + chr3R 29755024 intergenic CR44953 -,yata + chr3R 29755065 intergenic CR44953 - chr3R_5_29755001 chr3R_29755001 RAL-318 1399 chr3R 29758959 29758971 chr3R 29759016 29759049 6 74 2.0 2.5 2.2 1.9 90 chr3R 29758959 3` UTR CR44953 - chr3R 29759004 3` UTR CR44953 - chr3R 29759049 intergenic CR44953 - chr3R_6_29755001 chr3R_29755001 RAL-318 1400 chr3R 29882018 29882053 chr3R 29891175 29891210 roo 11 9157 2.5 2.5 2.5 3.1 9192 chr3R 29882018 intron CG31038 + chr3R 29886614 intron CG31038 + chr3R 29891210 intron CG31038 + chr3R_11_29885001 chr3R_29885001 RAL-318 1401 chr3R 29963481 29963506 chr3R 29963582 29963608 9 101 3.0 4.5 3.8 1.9 127 chr3R 29963481 intron TkR99D - chr3R 29963544 intron TkR99D - chr3R 29963608 intron TkR99D - chr3R_9_29960001 chr3R_29960001 RAL-318 1402 chr3R 29966063 29966070 chr3R 29966140 29966147 4 77 1.0 13.0 7.0 0.5 84 chr3R 29966063 intron TkR99D - chr3R 29966105 intron TkR99D - chr3R 29966147 intron TkR99D - chr3R_4_29965001 chr3R_29965001 RAL-318 1403 chr3R 29993551 29993580 chr3R 29993651 29993673 12 99 4.5 1.5 3.0 3.0 122 chr3R 29993551 3` UTR CG7903 - chr3R 29993612 3` UTR CG7903 - chr3R 29993673 3` UTR CG7903 - chr3R_12_29990001 chr3R_29990001 RAL-318 1404 chr3R 30084856 30084883 chr3R 30086323 30086349 hobo 10 1466 2.5 3.0 2.8 2.6 1493 chr3R 30084856 intron sima + chr3R 30085602 intron sima + chr3R 30086349 intron sima + chr3R_10_30085001 chr3R_30085001 RAL-318 1405 chr3R 30088616 30088635 chr3R 30088702 30088719 6 83 1.5 0.5 1.0 3.0 103 chr3R 30088616 intron sima + chr3R 30088668 intron sima + chr3R 30088719 intron sima + chr3R_6_30085001 chr3R_30085001 RAL-318 1406 chr3R 30124962 30124973 chr3R 30125036 30125048 4 75 3.0 4.0 3.5 0.9 86 chr3R 30124962 intergenic CG45073 - chr3R 30125005 intergenic CG45073 - chr3R 30125048 intergenic CG45073 - chr3R_4_30125001 chr3R_30125001 RAL-318 1407 chr3R 30170762 30170790 chr3R 30170848 30170866 8 86 1.5 3.5 2.5 2.3 104 chr3R 30170762 intron CG31028 - chr3R 30170814 intron CG31028 - chr3R 30170866 intron CG31028 - chr3R_8_30170001 chr3R_30170001 RAL-318 1408 chr3R 30210662 30210673 chr3R 30210742 30210748 4 79 0.5 8.5 4.5 0.7 86 chr3R 30210662 intergenic CecA1 +,Anp + chr3R 30210705 intergenic CecA1 +,Anp + chr3R 30210748 intergenic CecA1 +,Anp + chr3R_4_30210001 chr3R_30210001 RAL-318 1409 chr3R 30317335 30317350 chr3R 30324924 30324941 roo 8 7592 3.0 1.5 2.2 2.5 7606 chr3R 30317335 intron hdc + chr3R 30321138 intron hdc + chr3R 30324941 intron hdc + chr3R_8_30320001 chr3R_30320001 RAL-318 1410 chr3R 30387086 30387098 chr3R 30391367 30391381 6 4282 14.5 8.5 11.5 0.5 4295 chr3R 30387086 intron Fer1HCH - chr3R 30389234 exon Fer2LCH + chr3R 30391381 intergenic not near genes chr3R_6_30385001 chr3R_30385001 RAL-318 1411 chr3R 30387018 30387050 chr3R 30391319 30391345 15 4297 15.5 8.5 12.0 1.2 4327 chr3R 30387018 intron Fer1HCH - chr3R 30389182 intron Fer2LCH + chr3R 30391345 intergenic not near genes chr3R_15_30385001 chr3R_30385001 RAL-318 1412 chr3R 30456402 30456417 chr3R 30456482 30456498 4 80 0.0 3.0 1.5 1.6 96 chr3R 30456402 intergenic CG2224 - chr3R 30456450 3` UTR CG2224 - chr3R 30456498 3` UTR CG2224 - chr3R_4_30455001 chr3R_30455001 RAL-318 1413 chr3R 30458015 30458038 chr3R 30458095 30458118 5 80 0.5 3.0 1.8 1.8 103 chr3R 30458015 intron CG2224 - chr3R 30458066 intron CG2224 - chr3R 30458118 intron CG2224 - chr3R_5_30455001 chr3R_30455001 RAL-318 1414 chr3R 30461492 30461519 chr3R 30461608 30461635 7 116 2.5 2.5 2.5 2.0 143 chr3R 30461492 intron CDase + chr3R 30461564 intron CDase + chr3R 30461635 intron CDase + chr3R_7_30460001 chr3R_30460001 RAL-318 1415 chr3R 30480473 30480509 chr3R 30482941 30482977 jockey 12 2467 2.5 3.5 3.0 3.0 2504 chr3R 30480473 intron PH4alphaEFB + chr3R 30481725 intron PH4alphaEFB + chr3R 30482977 intron PH4alphaEFB + chr3R_12_30480001 chr3R_30480001 RAL-318 1416 chr3R 30602856 30602875 chr3R 30605913 30605948 18 3065 30.0 10.5 20.2 0.8 3092 chr3R 30602856 exon CG31021 + chr3R 30604402 intron PH4alphaNE3 + chr3R 30605948 exon PH4alphaNE3 + chr3R_18_30600001 chr3R_30600001 RAL-318 1417 chr3R 30627622 30627638 chr3R 30627684 30627718 12 72 3.5 4.5 4.0 2.4 96 chr3R 30627622 exon CG2267 - chr3R 30627670 exon CG2267 - chr3R 30627718 exon CG2267 - chr3R_12_30625001 chr3R_30625001 RAL-318 1418 chr3R 30679517 30679551 chr3R 30686986 30687018 blood 11 7466 4.0 4.5 4.2 2.1 7501 chr3R 30679517 intergenic not near genes chr3R 30683268 intergenic not near genes chr3R 30687018 intergenic not near genes chr3R_11_30680001 chr3R_30680001 RAL-318 1419 chr3R 30690160 30690182 chr3R 30690244 30690264 6 83 4.0 4.5 4.2 1.2 104 chr3R 30690160 intergenic Spn100A + chr3R 30690212 intergenic Spn100A + chr3R 30690264 intergenic Spn100A + chr3R_6_30690001 chr3R_30690001 RAL-318 1420 chr3R 30700868 30700878 chr3R 30700991 30701001 6 122 0.5 1.5 1.0 3.0 133 chr3R 30700868 intergenic not near genes chr3R 30700934 intergenic not near genes chr3R 30701001 intergenic not near genes chr3R_6_30700001 chr3R_30700001 RAL-318 1421 chr3R 30818809 30818837 chr3R 30820374 30820402 1360 7 1564 3.0 3.5 3.2 1.7 1593 chr3R 30818809 intron cindr + chr3R 30819606 intron cindr + chr3R 30820402 intron cindr + chr3R_7_30815001 chr3R_30815001 RAL-318 1422 chr3R 30948077 30948098 chr3R 30948268 30948285 10 190 6.0 2.5 4.2 1.9 208 chr3R 30948077 intergenic not near genes chr3R 30948181 intergenic not near genes chr3R 30948285 intergenic not near genes chr3R_10_30945001 chr3R_30945001 RAL-318 1423 chr3R 31042112 31042144 chr3R 31042199 31042230 9 86 1.0 5.0 3.0 2.2 118 chr3R 31042112 intron CanA1 + chr3R 31042171 intron CanA1 + chr3R 31042230 intron CanA1 + chr3R_9_31040001 chr3R_31040001 RAL-318 1424 chr3R 31074236 31074261 chr3R 31081828 31081859 springer 4 7596 3.5 3.0 3.2 1.0 7623 chr3R 31074236 intron Sox100B + chr3R 31078048 intron Sox100B + chr3R 31081859 intron Sox100B + chr3R_4_31075001 chr3R_31075001 RAL-318 1425 chr3R 31084912 31084917 chr3R 31084987 31084992 4 76 1.5 0.5 1.0 2.0 80 chr3R 31084912 intergenic not near genes chr3R 31084952 intergenic not near genes chr3R 31084992 intergenic not near genes chr3R_4_31080001 chr3R_31080001 RAL-318 1426 chr3R 31188024 31188054 chr3R 31188124 31188150 6 96 2.5 3.5 3.0 1.5 126 chr3R 31188024 intron mesh - chr3R 31188087 intron mesh - chr3R 31188150 intron mesh - chr3R_6_31185001 chr3R_31185001 RAL-318 1427 chr3R 31413088 31413123 chr3R 31418288 31418303 copia 11 5197 2.0 2.0 2.0 3.7 5215 chr3R 31413088 intron Gprk2 + chr3R 31415696 intron Gprk2 + chr3R 31418303 intron Gprk2 + chr3R_11_31415001 chr3R_31415001 RAL-318 1428 chr3R 31426887 31426905 chr3R 31426979 31426997 8 90 1.5 3.5 2.5 2.3 110 chr3R 31426887 intron Gprk2 + chr3R 31426942 intron Gprk2 + chr3R 31426997 intron Gprk2 + chr3R_8_31425001 chr3R_31425001 RAL-318 1429 chr3R 31430719 31430746 chr3R 31430807 31430828 15 87 5.0 1.5 3.2 3.6 109 chr3R 31430719 intron Gprk2 + chr3R 31430774 intron Gprk2 + chr3R 31430828 intron Gprk2 + chr3R_15_31430001 chr3R_31430001 RAL-318 1430 chr3R 31435369 31435558 chr3R 31435521 31435819 7 199 1.0 0.0 0.5 4.7 450 chr3R 31435369 intron Gprk2 + chr3R 31435594 intron Gprk2 + chr3R 31435819 intron Gprk2 + chr3R_7_31435001 chr3R_31435001 RAL-318 1431 chr3R 31435559 31435577 chr3R 31435821 31435838 5 257 1.0 5.0 3.0 1.2 279 chr3R 31435559 intron Gprk2 + chr3R 31435698 intron Gprk2 + chr3R 31435838 intron Gprk2 + chr3R_5_31435001 chr3R_31435001 RAL-318 1432 chr3R 31691539 31691557 chr3R 31696304 31696310 Doc 6 4759 4.0 11.0 7.5 0.7 4771 chr3R 31691539 intergenic not near genes chr3R 31693924 intergenic not near genes chr3R 31696310 intergenic not near genes chr3R_6_31690001 chr3R_31690001 RAL-318 1433 chr3R 31691560 31691562 chr3R 31696297 31696310 Doc 6 4753 4.0 8.5 6.2 0.8 4750 chr3R 31691560 intergenic not near genes chr3R 31693935 intergenic not near genes chr3R 31696310 intergenic not near genes chr3R_6_31690001 chr3R_31690001 RAL-318 1434 chr3R 31829203 31829224 chr3R 31829281 31829302 7 78 4.0 4.0 4.0 1.4 99 chr3R 31829203 intron RhoGAP100F + chr3R 31829252 intron RhoGAP100F + chr3R 31829302 intron RhoGAP100F + chr3R_7_31825001 chr3R_31825001 RAL-318 1435 chr3R 31831548 31831570 chr3R 31831614 31831649 7 77 2.5 5.0 3.8 1.5 101 chr3R 31831548 intron RhoGAP100F + chr3R 31831598 intron RhoGAP100F + chr3R 31831649 intron RhoGAP100F + chr3R_7_31830001 chr3R_31830001 RAL-318 1436 chr3R 31862117 31862131 chr3R 31862206 31862214 4 87 3.5 4.0 3.8 0.8 97 chr3R 31862117 intron heph - chr3R 31862166 intron heph - chr3R 31862214 intron heph - chr3R_4_31860001 chr3R_31860001 RAL-318 1437 chr3R 31862443 31862478 chr3R 31862527 31862562 24 82 3.0 1.5 2.2 7.5 119 chr3R 31862443 intron heph - chr3R 31862502 intron heph - chr3R 31862562 intron heph - chr3R_24_31860001 chr3R_31860001 RAL-318 1438 chr3R 31878612 31878643 chr3R 31878690 31878719 8 72 3.0 3.5 3.2 1.9 107 chr3R 31878612 intron heph - chr3R 31878666 intron heph - chr3R 31878719 intron heph - chr3R_8_31875001 chr3R_31875001 RAL-318 1439 chr3R 31905778 31905813 chr3R 31905861 31905895 13 81 3.0 4.0 3.5 2.9 117 chr3R 31905778 intron heph - chr3R 31905836 intron heph - chr3R 31905895 intron heph - chr3R_13_31905001 chr3R_31905001 RAL-318 1440 chr3R 31917378 31917394 chr3R 31917489 31917505 5 111 4.5 3.5 4.0 1.0 127 chr3R 31917378 intron heph - chr3R 31917442 intron heph - chr3R 31917505 intron heph - chr3R_5_31915001 chr3R_31915001 RAL-318 1441 chr3R 31917395 31917399 chr3R 31917485 31917510 4 106 3.5 3.5 3.5 0.9 115 chr3R 31917395 intron heph - chr3R 31917452 intron heph - chr3R 31917510 intron heph - chr3R_4_31915001 chr3R_31915001 RAL-318 1442 chr3R 31924425 31924444 chr3R 31924508 31924528 4 84 5.5 2.5 4.0 0.8 103 chr3R 31924425 intron heph - chr3R 31924476 intron heph - chr3R 31924528 intron heph - chr3R_4_31920001 chr3R_31920001 RAL-318 1443 chr3R 31925692 31925710 chr3R 31925767 31925786 4 76 1.5 0.0 0.8 2.2 94 chr3R 31925692 intron heph - chr3R 31925739 intron heph - chr3R 31925786 intron heph - chr3R_4_31925001 chr3R_31925001 RAL-318 1444 chr3R 31957947 31957965 chr3R 31958065 31958082 4 118 1.5 4.0 2.8 1.1 135 chr3R 31957947 intron heph - chr3R 31958014 intron heph - chr3R 31958082 intron heph - chr3R_4_31955001 chr3R_31955001 RAL-318 1445 chr3R 31966459 31966489 chr3R 31966544 31966574 9 80 2.0 6.5 4.2 1.7 115 chr3R 31966459 intron heph - chr3R 31966516 intron heph - chr3R 31966574 intron heph - chr3R_9_31965001 chr3R_31965001 RAL-318 1446 chr3R 31998004 31998025 chr3R 32005469 32005494 blood 6 7469 2.0 5.5 3.8 1.2 7490 chr3R 31998004 intron heph - chr3R 32001749 intron heph - chr3R 32005494 intron heph - chr3R_6_32000001 chr3R_32000001 RAL-318 1447 chr3R 32022327 32022353 chr3R 32022427 32022455 8 100 3.0 4.0 3.5 1.8 128 chr3R 32022327 5` UTR CR45557 + chr3R 32022391 5` UTR CR45557 + chr3R 32022455 5` UTR CR45557 + chr3R_8_32020001 chr3R_32020001 RAL-318 1448 chr4 671605 671635 chr4 680188 680212 Tirant 5 8582 3.0 2.0 2.5 1.4 8607 chr4 671605 intron CG11360 + chr4 675908 intron CG11360 + chr4 680212 intron CG11360 + chr4_5_675001 chr4_675001 RAL-318 1449 chrX 201057 201069 chrX 201121 201146 4 74 0.0 1.5 0.8 2.2 89 chrX 201057 intergenic not near genes chrX 201102 intergenic not near genes chrX 201146 intergenic not near genes chrX_4_200001 chrX_200001 RAL-318 1450 chrX 318484 318497 chrX 323570 323582 flea 4 5086 0.5 2.5 1.5 1.6 5098 chrX 318484 intron,intron CG3777 +,CG32816 - chrX 321033 intron,intron CG3777 +,CG32816 - chrX 323582 intron,intron CG3777 +,CG32816 - chrX_4_320001 chrX_320001 RAL-318 1451 chrX 367042 367070 chrX 367138 367167 10 95 2.5 2.5 2.5 2.9 125 chrX 367042 intron,5` UTR CG32816 -,yar + chrX 367104 intron CG32816 - chrX 367167 intron CG32816 - chrX_10_365001 chrX_365001 RAL-318 1452 chrX 449891 449920 chrX 449988 450017 9 97 2.5 1.5 2.0 3.0 126 chrX 449891 intron CG32816 - chrX 449954 intron CG32816 - chrX 450017 intron CG32816 - chrX_9_445001 chrX_445001 RAL-318 1453 chrX 547635 547663 chrX 547879 547907 5 244 0.5 1.0 0.8 2.8 272 chrX 547635 intron Appl + chrX 547771 intron Appl + chrX 547907 intron Appl + chrX_5_545001 chrX_545001 RAL-318 1454 chrX 551425 551451 chrX 558987 559013 412 8 7559 3.0 2.0 2.5 2.3 7588 chrX 551425 intron Appl + chrX 555219 intron Appl + chrX 559013 intron Appl + chrX_8_555001 chrX_555001 RAL-318 1455 chrX 670262 670297 chrX 670342 670367 12 75 0.0 1.5 0.8 6.7 105 chrX 670262 intergenic not near genes chrX 670314 intergenic not near genes chrX 670367 intergenic not near genes chrX_12_670001 chrX_670001 RAL-318 1456 chrX 802286 802320 chrX 802363 802381 9 72 4.0 4.0 4.0 1.8 95 chrX 802286 exon CG13359 - chrX 802334 exon CG13359 - chrX 802381 exon CG13359 - chrX_9_800001 chrX_800001 RAL-318 1457 chrX 827599 827635 chrX 835391 835427 roo 11 7788 3.5 1.5 2.5 3.1 7828 chrX 827599 intron CG43867 - chrX 831513 intron CG43867 - chrX 835427 intron CG43867 - chrX_11_830001 chrX_830001 RAL-318 1458 chrX 906705 906714 chrX 908494 908502 S-element 4 1789 4.5 7.0 5.8 0.6 1797 chrX 906705 intron CG43867 - chrX 907604 intron CG43867 - chrX 908502 intron CG43867 - chrX_4_905001 chrX_905001 RAL-318 1459 chrX 912026 912051 chrX 912116 912141 5 90 4.0 3.5 3.8 1.0 115 chrX 912026 intron CG43867 - chrX 912084 intron CG43867 - chrX 912141 intron CG43867 - chrX_5_910001 chrX_910001 RAL-318 1460 chrX 983775 983798 chrX 983893 983909 6 116 2.5 2.0 2.2 1.9 134 chrX 983775 intergenic not near genes chrX 983842 intergenic not near genes chrX 983909 intergenic not near genes chrX_6_980001 chrX_980001 RAL-318 1461 chrX 1051075 1051090 chrX 1051153 1051168 5 78 4.5 5.5 5.0 0.8 93 chrX 1051075 intron CR44779 + chrX 1051122 intron CR44779 + chrX 1051168 intron CR44779 + chrX_5_1050001 chrX_1050001 RAL-318 1462 chrX 1253730 1253762 chrX 1253811 1253844 18 79 3.0 5.0 4.0 3.6 114 chrX 1253730 intron Atf3 - chrX 1253787 intron Atf3 - chrX 1253844 intron Atf3 - chrX_18_1250001 chrX_1250001 RAL-318 1463 chrX 1357781 1357807 chrX 1367950 1367977 Doc 6 10169 0.5 1.0 0.8 3.3 10196 chrX 1357781 intergenic png - chrX 1362879 intergenic not near genes chrX 1367977 intergenic not near genes chrX_6_1360001 chrX_1360001 RAL-318 1464 chrX 1518039 1518072 chrX 1523441 1523461 jockey 12 5400 3.0 3.5 3.2 2.9 5422 chrX 1518039 intergenic inc + chrX 1520750 intergenic not near genes chrX 1523461 intergenic not near genes chrX_12_1520001 chrX_1520001 RAL-318 1465 chrX 1627976 1628007 chrX 1635444 1635457 gtwin 6 7465 1.5 2.5 2.0 2.0 7481 chrX 1627976 intron,intron Mur2B -,br + chrX 1631716 intron,intron Mur2B -,br + chrX 1635457 intron,intron Mur2B -,br + chrX_6_1630001 chrX_1630001 RAL-318 1466 chrX 2320480 2320498 chrX 2320557 2320564 6 73 0.5 2.5 1.5 2.4 84 chrX 2320480 intron phl + chrX 2320522 intron phl + chrX 2320564 intron phl + chrX_6_2320001 chrX_2320001 RAL-318 1467 chrX 2397927 2397934 chrX 2397999 2398022 5 88 2.5 0.0 1.2 2.3 95 chrX 2397927 intergenic not near genes chrX 2397974 intergenic not near genes chrX 2398022 intergenic not near genes chrX_5_2395001 chrX_2395001 RAL-318 1468 chrX 2635375 2635380 chrX 2635484 2635489 5 109 4.0 4.5 4.2 1.0 114 chrX 2635375 intron sgg + chrX 2635432 intron sgg + chrX 2635489 intron sgg + chrX_5_2635001 chrX_2635001 RAL-318 1469 chrX 2635385 2635400 chrX 2635482 2635509 6 105 2.0 3.0 2.5 1.7 124 chrX 2635385 intron sgg + chrX 2635447 intron sgg + chrX 2635509 intron sgg + chrX_6_2635001 chrX_2635001 RAL-318 1470 chrX 2664391 2664420 chrX 2665533 2665566 1360 5 1143 0.0 2.5 1.2 2.3 1175 chrX 2664391 intron sgg + chrX 2664978 intron sgg + chrX 2665566 intron sgg + chrX_5_2660001 chrX_2660001 RAL-318 1471 chrX 2844897 2844932 chrX 2852307 2852317 mdg1 6 7406 1.0 2.5 1.8 2.1 7420 chrX 2844897 intron kirre + chrX 2848607 intron kirre + chrX 2852317 intron kirre + chrX_6_2845001 chrX_2845001 RAL-318 1472 chrX 2880034 2880063 chrX 2880120 2880149 8 85 6.0 4.0 5.0 1.3 115 chrX 2880034 intron kirre + chrX 2880092 intron kirre + chrX 2880149 intron kirre + chrX_8_2880001 chrX_2880001 RAL-318 1473 chrX 2888112 2888138 chrX 2888190 2888216 10 78 2.0 2.0 2.0 3.3 104 chrX 2888112 intron kirre + chrX 2888164 intron kirre + chrX 2888216 intron kirre + chrX_10_2885001 chrX_2885001 RAL-318 1474 chrX 2917185 2917202 chrX 2917521 2917539 7 336 6.0 2.5 4.2 1.3 354 chrX 2917185 intron kirre + chrX 2917362 intron kirre + chrX 2917539 intron kirre + chrX_7_2915001 chrX_2915001 RAL-318 1475 chrX 2986753 2986772 chrX 2986835 2986853 4 82 3.5 0.5 2.0 1.3 100 chrX 2986753 intron kirre + chrX 2986803 intron kirre + chrX 2986853 intron kirre + chrX_4_2985001 chrX_2985001 RAL-318 1476 chrX 3058028 3058046 chrX 3058269 3058287 pogo 4 237 4.5 3.0 3.8 0.8 259 chrX 3058028 intron kirre + chrX 3058158 intron kirre + chrX 3058287 intron kirre + chrX_4_3055001 chrX_3055001 RAL-318 1477 chrX 3067931 3067960 chrX 3068020 3068049 7 88 2.0 1.5 1.8 2.5 118 chrX 3067931 intron kirre + chrX 3067990 intron kirre + chrX 3068049 intron kirre + chrX_7_3065001 chrX_3065001 RAL-318 1478 chrX 3075649 3075661 chrX 3080955 3080967 Transpac 4 5306 1.0 1.5 1.2 1.8 5318 chrX 3075649 intron kirre + chrX 3078308 intron kirre + chrX 3080967 intron kirre + chrX_4_3075001 chrX_3075001 RAL-318 1479 chrX 3109453 3109467 chrX 3109530 3109530 5 74 4.0 2.5 3.2 1.2 77 chrX 3109453 intron kirre + chrX 3109492 intron kirre + chrX 3109530 intron kirre + chrX_5_3105001 chrX_3105001 RAL-318 1480 chrX 3260873 3260907 chrX 3260951 3260960 12 72 3.0 2.0 2.5 3.4 87 chrX 3260873 intron dnc + chrX 3260916 intron dnc + chrX 3260960 intron dnc + chrX_12_3260001 chrX_3260001 RAL-318 1481 chrX 3408988 3409016 chrX 3409061 3409092 13 75 1.0 2.0 1.5 5.2 104 chrX 3408988 intron,intron CR44999 +,CG12535 - chrX 3409040 intron,intron CR44999 +,CG12535 - chrX 3409092 intron,intron CR44999 +,CG12535 - chrX_13_3405001 chrX_3405001 RAL-318 1482 chrX 3493091 3493112 chrX 3502250 3502271 roo 5 9159 2.0 1.0 1.5 2.0 9180 chrX 3493091 intron,intron CR44999 +,Gas8 - chrX 3497681 intron,intron CR44999 +,Gas8 - chrX 3502271 intron,intron CR44999 +,Gas8 - chrX_5_3495001 chrX_3495001 RAL-318 1483 chrX 3513763 3513787 chrX 3513846 3513870 5 83 2.5 2.0 2.2 1.6 107 chrX 3513763 intron,intron CR44999 +,CG32791 - chrX 3513816 intron,intron CR44999 +,CG32791 - chrX 3513870 intron,intron CR44999 +,CG32791 - chrX_5_3510001 chrX_3510001 RAL-318 1484 chrX 3597550 3597583 chrX 3619718 3619750 roo 9 22165 1.0 3.0 2.0 3.0 22200 chrX 3597550 intron AstA-R1 + chrX 3608650 intron AstA-R1 + chrX 3619750 intron AstA-R1 + chrX_9_3605001 chrX_3605001 RAL-318 1485 chrX 3726760 3726795 chrX 3730157 3730192 NOF 10 3393 1.5 1.0 1.2 4.5 3432 chrX 3726760 intron tlk + chrX 3728476 intron tlk + chrX 3730192 intron tlk + chrX_10_3725001 chrX_3725001 RAL-318 1486 chrX 3866107 3866132 chrX 3866185 3866210 6 78 0.5 0.5 0.5 4.0 103 chrX 3866107 intron yin - chrX 3866158 intron yin - chrX 3866210 intron yin - chrX_6_3865001 chrX_3865001 RAL-318 1487 chrX 3881277 3881303 chrX 3881416 3881442 8 138 2.0 2.5 2.2 2.5 165 chrX 3881277 intron VhaAC39-1 + chrX 3881360 intron VhaAC39-1 + chrX 3881442 intron VhaAC39-1 + chrX_8_3880001 chrX_3880001 RAL-318 1488 chrX 3915522 3915536 chrX 3915609 3915623 5 87 1.5 0.5 1.0 2.5 101 chrX 3915522 intron CG42541 - chrX 3915572 intron CG42541 - chrX 3915623 intron CG42541 - chrX_5_3915001 chrX_3915001 RAL-318 1489 chrX 3919126 3919143 chrX 3919204 3919220 4 78 2.5 4.0 3.2 1.0 94 chrX 3919126 intron CG42541 - chrX 3919173 intron CG42541 - chrX 3919220 intron CG42541 - chrX_4_3915001 chrX_3915001 RAL-318 1490 chrX 3922137 3922151 chrX 3922406 3922426 5 270 4.5 4.5 4.5 0.9 289 chrX 3922137 intron CG42541 - chrX 3922282 intron CG42541 - chrX 3922426 intron CG42541 - chrX_5_3920001 chrX_3920001 RAL-318 1491 chrX 3986863 3986893 chrX 3994496 3994526 412 7 7632 2.0 2.0 2.0 2.3 7663 chrX 3986863 intergenic not near genes chrX 3990694 intergenic not near genes chrX 3994526 intergenic not near genes chrX_7_3990001 chrX_3990001 RAL-318 1492 chrX 4170164 4170192 chrX 4170234 4170269 10 74 2.5 2.5 2.5 2.9 105 chrX 4170164 intron Fas2 - chrX 4170216 intron Fas2 - chrX 4170269 intron Fas2 - chrX_10_4170001 chrX_4170001 RAL-318 1493 chrX 4396982 4397011 chrX 4397067 4397095 12 82 3.0 4.0 3.5 2.7 113 chrX 4396982 intron CR32773 - chrX 4397038 intron CR32773 - chrX 4397095 intron CR32773 - chrX_12_4395001 chrX_4395001 RAL-318 1494 chrX 4436460 4436467 chrX 4436536 4436543 4 76 6.0 1.5 3.8 0.8 83 chrX 4436460 intron,intron CR32773 -,bi + chrX 4436502 intron,intron CR32773 -,bi + chrX 4436543 intron,intron CR32773 -,bi + chrX_4_4435001 chrX_4435001 RAL-318 1495 chrX 4575622 4575646 chrX 4575711 4575735 4 89 1.0 1.5 1.2 1.8 113 chrX 4575622 intron CR32773 - chrX 4575678 intron CR32773 - chrX 4575735 intron CR32773 - chrX_4_4575001 chrX_4575001 RAL-318 1496 chrX 4700393 4700421 chrX 4700735 4700764 jockey 4 342 1.5 2.5 2.0 1.3 371 chrX 4700393 3` UTR ctp + chrX 4700578 3` UTR ctp + chrX 4700764 3` UTR ctp + chrX_4_4700001 chrX_4700001 RAL-318 1497 chrX 4723573 4723582 chrX 4723653 4723661 4 79 4.5 6.0 5.2 0.6 88 chrX 4723573 intron Proc-R + chrX 4723617 intron Proc-R + chrX 4723661 intron Proc-R + chrX_4_4720001 chrX_4720001 RAL-318 1498 chrX 4731815 4731826 chrX 4736907 4736919 jockey 5 5093 9.5 0.5 5.0 0.8 5104 chrX 4731815 intergenic not near genes chrX 4734367 intergenic not near genes chrX 4736919 intergenic not near genes chrX_5_4730001 chrX_4730001 RAL-318 1499 chrX 4763275 4763285 chrX 4763737 4763773 Stalker4 5 479 3.0 2.0 2.5 1.4 498 chrX 4763275 intergenic not near genes chrX 4763524 intergenic not near genes chrX 4763773 intergenic not near genes chrX_5_4760001 chrX_4760001 RAL-318 1500 chrX 4864171 4864180 chrX 4864232 4864257 4 72 5.0 3.5 4.2 0.8 86 chrX 4864171 intron CG42594 + chrX 4864214 intron CG42594 + chrX 4864257 intron CG42594 + chrX_4_4860001 chrX_4860001 RAL-318 1501 chrX 4990063 4990077 chrX 4997257 4997291 roo 4 7209 1.5 2.0 1.8 1.4 7228 chrX 4990063 intron CR44833 - chrX 4993677 intron CR44833 - chrX 4997291 intron CR44833 - chrX_4_4990001 chrX_4990001 RAL-318 1502 chrX 5025729 5025744 chrX 5025837 5025852 5 108 2.5 1.5 2.0 1.7 123 chrX 5025729 intron CR44833 - chrX 5025790 intron CR44833 - chrX 5025852 intron CR44833 - chrX_5_5025001 chrX_5025001 RAL-318 1503 chrX 5096278 5096305 chrX 5103843 5103870 springer 11 7563 2.0 4.0 3.0 2.8 7592 chrX 5096278 intron,intron CG15465 +,rg + chrX 5100074 intron,intron CG15465 +,rg + chrX 5103870 intron,intron CG15465 +,rg + chrX_11_5100001 chrX_5100001 RAL-318 1504 chrX 5134796 5134829 chrX 5134897 5134930 7 100 2.5 1.0 1.8 2.5 134 chrX 5134796 intron,intron CG15465 +,rg + chrX 5134863 intron,intron CG15465 +,rg + chrX 5134930 intron,intron CG15465 +,rg + chrX_7_5130001 chrX_5130001 RAL-318 1505 chrX 5159724 5159746 chrX 5159819 5159841 4 95 1.0 3.0 2.0 1.3 117 chrX 5159724 intron,intron CG15465 +,rg + chrX 5159782 intron,intron CG15465 +,rg + chrX 5159841 intron,intron CG15465 +,rg + chrX_4_5155001 chrX_5155001 RAL-318 1506 chrX 5220392 5220416 chrX 5220633 5220657 6 240 0.0 4.0 2.0 2.0 265 chrX 5220392 intron,intron CG15465 +,rg + chrX 5220524 intron,intron CG15465 +,rg + chrX 5220657 intron,intron CG15465 +,rg + chrX_6_5220001 chrX_5220001 RAL-318 1507 chrX 5345394 5345429 chrX 5345505 5345540 11 109 1.0 0.5 0.8 6.1 146 chrX 5345394 intron SK + chrX 5345467 intron SK + chrX 5345540 intron SK + chrX_11_5345001 chrX_5345001 RAL-318 1508 chrX 5473588 5473613 chrX 5473664 5473679 6 74 2.0 2.0 2.0 2.0 91 chrX 5473588 intron SPR + chrX 5473634 intron SPR + chrX 5473679 intron SPR + chrX_6_5470001 chrX_5470001 RAL-318 1509 chrX 5509104 5509123 chrX 5509187 5509215 6 90 8.5 3.5 6.0 0.9 111 chrX 5509104 intergenic not near genes chrX 5509160 intergenic not near genes chrX 5509215 intergenic not near genes chrX_6_5505001 chrX_5505001 RAL-318 1510 chrX 5524849 5524873 chrX 5528712 5528736 412 4 3860 0.5 0.0 0.2 3.3 3887 chrX 5524849 intergenic snoRNA:Psi28S-3342 - chrX 5526792 intergenic not near genes chrX 5528736 intergenic Vsx2 - chrX_4_5525001 chrX_5525001 RAL-318 1511 chrX 5798877 5798891 chrX 5799027 5799053 4 159 1.5 4.5 3.0 1.0 176 chrX 5798877 intergenic not near genes chrX 5798965 intergenic not near genes chrX 5799053 intergenic not near genes chrX_4_5795001 chrX_5795001 RAL-318 1512 chrX 5883813 5883832 chrX 5884053 5884070 pogo 5 240 3.5 1.0 2.2 1.6 257 chrX 5883813 intron CR45668 - chrX 5883942 intron CR45668 - chrX 5884070 intron CR45668 - chrX_5_5880001 chrX_5880001 RAL-318 1513 chrX 6003289 6003308 chrX 6003367 6003389 6 80 0.0 4.0 2.0 2.0 100 chrX 6003289 intron CR44498 + chrX 6003339 intron CR44498 + chrX 6003389 intron CR44498 + chrX_6_6000001 chrX_6000001 RAL-318 1514 chrX 6118697 6118733 chrX 6118779 6118815 8 80 1.5 4.0 2.8 2.1 118 chrX 6118697 intron Ca-alpha1T - chrX 6118756 intron Ca-alpha1T - chrX 6118815 intron Ca-alpha1T - chrX_8_6115001 chrX_6115001 RAL-318 1515 chrX 6171590 6171613 chrX 6179023 6179046 Quasimodo 4 7433 2.5 3.5 3.0 1.0 7456 chrX 6171590 intron Ca-alpha1T - chrX 6175318 intron Ca-alpha1T - chrX 6179046 intron Ca-alpha1T - chrX_4_6175001 chrX_6175001 RAL-318 1516 chrX 6335233 6335241 chrX 6337736 6337751 Tirant 7 2508 0.0 7.5 3.8 1.5 2518 chrX 6335233 intergenic not near genes chrX 6336492 intergenic not near genes chrX 6337751 intergenic CG3842 + chrX_7_6335001 chrX_6335001 RAL-318 1517 chrX 6562816 6562835 chrX 6571298 6571304 Tirant 4 8478 2.0 0.5 1.2 1.8 8488 chrX 6562816 intron CG34417 + chrX 6567060 intron CG34417 + chrX 6571304 intron CG34417 + chrX_4_6565001 chrX_6565001 RAL-318 1518 chrX 6605481 6605502 chrX 6608503 6608524 Burdock 6 3022 0.5 3.5 2.0 2.0 3043 chrX 6605481 intron pigs + chrX 6607002 intron pigs + chrX 6608524 intron pigs + chrX_6_6605001 chrX_6605001 RAL-318 1519 chrX 6897583 6897706 chrX 6897660 6897816 10 102 3.5 4.0 3.8 2.1 233 chrX 6897583 intergenic not near genes chrX 6897700 intergenic not near genes chrX 6897816 intergenic not near genes chrX_10_6895001 chrX_6895001 RAL-318 1520 chrX 7023620 7023631 chrX 7031003 7031021 Tabor 6 7388 5.0 2.0 3.5 1.3 7401 chrX 7023620 intron CG12541 - chrX 7027320 intron CG12541 - chrX 7031021 intron CG12541 - chrX_6_7025001 chrX_7025001 RAL-318 1521 chrX 7125247 7125278 chrX 7134405 7134437 roo 7 9158 1.0 3.5 2.2 2.2 9190 chrX 7125247 intergenic not near genes chrX 7129842 intergenic not near genes chrX 7134437 intergenic not near genes chrX_7_7125001 chrX_7125001 RAL-318 1522 chrX 7702899 7702929 chrX 7703338 7703368 jockey 4 436 2.0 4.5 3.2 1.0 469 chrX 7702899 intron CHES-1-like - chrX 7703134 intron CHES-1-like - chrX 7703368 intron CHES-1-like - chrX_4_7700001 chrX_7700001 RAL-318 1523 chrX 7720574 7720580 chrX 7720636 7720662 6 78 3.0 2.5 2.8 1.6 88 chrX 7720574 intergenic not near genes chrX 7720618 intergenic not near genes chrX 7720662 intergenic not near genes chrX_6_7720001 chrX_7720001 RAL-318 1524 chrX 7784234 7784259 chrX 7784536 7784540 jockey 7 293 3.0 5.0 4.0 1.4 306 chrX 7784234 intergenic not near genes chrX 7784387 intergenic not near genes chrX 7784540 intergenic not near genes chrX_7_7780001 chrX_7780001 RAL-318 1525 chrX 7832451 7832464 chrX 7832538 7832553 4 88 2.0 2.0 2.0 1.3 102 chrX 7832451 intron CG1402 + chrX 7832502 intron CG1402 + chrX 7832553 intron CG1402 + chrX_4_7830001 chrX_7830001 RAL-318 1526 chrX 7881849 7881868 chrX 7881930 7881950 6 82 1.0 0.5 0.8 3.3 101 chrX 7881849 intergenic Ir7f -,Ir7e - chrX 7881900 intergenic Ir7f -,Ir7e - chrX 7881950 3` UTR Ir7f - chrX_6_7880001 chrX_7880001 RAL-318 1527 chrX 8031428 8031461 chrX 8035737 8035770 Juan 7 4306 2.0 4.0 3.0 1.8 4342 chrX 8031428 intergenic not near genes chrX 8033599 intergenic not near genes chrX 8035770 3` UTR CG2233 - chrX_7_8030001 chrX_8030001 RAL-318 1528 chrX 8063734 8063770 chrX 8063832 8063849 5 88 2.0 1.5 1.8 1.8 115 chrX 8063734 intron mys + chrX 8063792 intron mys + chrX 8063849 5` UTR mys + chrX_5_8060001 chrX_8060001 RAL-318 1529 chrX 8085573 8085601 chrX 8085659 8085687 11 86 1.5 1.0 1.2 5.0 114 chrX 8085573 intron,5` UTR CG2256 -,CR45535 + chrX 8085630 intron,5` UTR CG2256 -,CR45535 + chrX 8085687 intron,5` UTR CG2256 -,CR45535 + chrX_11_8085001 chrX_8085001 RAL-318 1530 chrX 8092294 8092313 chrX 8092378 8092398 5 85 3.0 2.0 2.5 1.4 104 chrX 8092294 intron Ubc-E2H - chrX 8092346 intron Ubc-E2H - chrX 8092398 intron Ubc-E2H - chrX_5_8090001 chrX_8090001 RAL-318 1531 chrX 8364850 8364881 chrX 8365247 8365294 BS 6 402 0.0 0.0 0.0 6.0 444 chrX 8364850 intron nAChRalpha3 - chrX 8365072 intron nAChRalpha3 - chrX 8365294 intron nAChRalpha3 - chrX_6_8365001 chrX_8365001 RAL-318 1532 chrX 8371152 8371169 chrX 8371314 8371321 5 157 4.0 0.0 2.0 1.7 169 chrX 8371152 intergenic not near genes chrX 8371236 intergenic not near genes chrX 8371321 intergenic not near genes chrX_5_8370001 chrX_8370001 RAL-318 1533 chrX 8922328 8922360 chrX 8922762 8922784 jockey 6 432 2.0 4.0 3.0 1.5 456 chrX 8922328 intron rdgA + chrX 8922556 intron rdgA + chrX 8922784 intron rdgA + chrX_6_8920001 chrX_8920001 RAL-318 1534 chrX 9062728 9062753 chrX 9062806 9062831 9 76 2.0 0.5 1.2 4.1 103 chrX 9062728 intron CG15365 - chrX 9062780 intron CG15365 - chrX 9062831 intron CG15365 - chrX_9_9060001 chrX_9060001 RAL-318 1535 chrX 9337947 9337973 chrX 9338032 9338062 8 90 3.0 0.5 1.8 2.9 115 chrX 9337947 intron CG34449 - chrX 9338004 intron CG34449 - chrX 9338062 exon CG34449 - chrX_8_9335001 chrX_9335001 RAL-318 1536 chrX 9342901 9342923 chrX 9342970 9342998 5 73 0.0 0.5 0.2 4.2 97 chrX 9342901 intron CG34449 - chrX 9342950 intron CG34449 - chrX 9342998 intron CG34449 - chrX_5_9340001 chrX_9340001 RAL-318 1537 chrX 9508136 9508163 chrX 9509652 9509681 jockey 5 1517 2.0 0.5 1.2 2.3 1545 chrX 9508136 intron CG32700 - chrX 9508908 intron CG32700 - chrX 9509681 intron CG32700 - chrX_5_9505001 chrX_9505001 RAL-318 1538 chrX 9575795 9575815 chrX 9576116 9576127 mdg3 6 321 5.0 2.0 3.5 1.3 332 chrX 9575795 intron,exon CG32699 -,CG42395 - chrX 9575961 intron,intron CG32699 -,CG42395 - chrX 9576127 intron,exon CG32699 -,CG42395 - chrX_6_9575001 chrX_9575001 RAL-318 1539 chrX 9925529 9925563 chrX 9925611 9925645 6 81 3.5 2.0 2.8 1.6 116 chrX 9925529 intergenic not near genes chrX 9925587 intergenic not near genes chrX 9925645 intergenic not near genes chrX_6_9925001 chrX_9925001 RAL-318 1540 chrX 9949165 9949187 chrX 9949309 9949325 7 143 3.0 0.0 1.5 2.8 160 chrX 9949165 intergenic not near genes chrX 9949245 intergenic not near genes chrX 9949325 intergenic not near genes chrX_7_9945001 chrX_9945001 RAL-318 1541 chrX 10196199 10196221 chrX 10196300 10196328 7 107 5.5 4.0 4.8 1.2 129 chrX 10196199 intron CR44894 - chrX 10196264 intron CR44894 - chrX 10196328 intron CR44894 - chrX_7_10195001 chrX_10195001 RAL-318 1542 chrX 10550855 10550885 chrX 10552322 10552352 hobo 6 1467 3.0 3.5 3.2 1.4 1497 chrX 10550855 intron spri - chrX 10551604 intron spri - chrX 10552352 intron spri - chrX_6_10550001 chrX_10550001 RAL-318 1543 chrX 10686049 10686081 chrX 10691186 10691218 roo 5 5133 0.5 3.0 1.8 1.8 5169 chrX 10686049 intron X11Lbeta + chrX 10688634 intron X11Lbeta + chrX 10691218 intron X11Lbeta + chrX_5_10685001 chrX_10685001 RAL-318 1544 chrX 10772679 10772698 chrX 10772762 10772781 Tirant 9 82 2.5 1.0 1.8 3.2 102 chrX 10772679 intron CG15211 + chrX 10772730 intron CG15211 + chrX 10772781 intron CG15211 + chrX_9_10770001 chrX_10770001 RAL-318 1545 chrX 10876645 10876651 chrX 10876721 10876729 4 76 0.0 4.5 2.2 1.2 84 chrX 10876645 intron CG1637 - chrX 10876687 intron CG1637 - chrX 10876729 intron CG1637 - chrX_4_10875001 chrX_10875001 RAL-318 1546 chrX 11096001 11096025 chrX 11103103 11103127 HMS-Beagle 4 7102 1.0 1.0 1.0 2.0 7126 chrX 11096001 intergenic not near genes chrX 11099564 intergenic not near genes chrX 11103127 intron CG42249 + chrX_4_11095001 chrX_11095001 RAL-318 1547 chrX 11184249 11184281 chrX 11189325 11189357 flea 10 5076 4.0 2.5 3.2 2.4 5108 chrX 11184249 intergenic not near genes chrX 11186803 intergenic not near genes chrX 11189357 intergenic not near genes chrX_10_11185001 chrX_11185001 RAL-318 1548 chrX 11194449 11194460 chrX 11201869 11201879 gypsy5 5 7420 3.5 4.0 3.8 1.0 7430 chrX 11194449 intergenic not near genes chrX 11198164 intergenic not near genes chrX 11201879 intergenic CG11106 + chrX_5_11195001 chrX_11195001 RAL-318 1549 chrX 11254174 11254203 chrX 11254285 11254314 14 109 3.5 2.5 3.0 3.5 140 chrX 11254174 intron CG44422 - chrX 11254244 intron CG44422 - chrX 11254314 intron CG44422 - chrX_14_11250001 chrX_11250001 RAL-318 1550 chrX 11312059 11312094 chrX 11319412 11319424 Stalker2 4 7337 0.5 3.5 2.0 1.3 7365 chrX 11312059 intergenic not near genes chrX 11315742 intergenic not near genes chrX 11319424 intergenic not near genes chrX_4_11315001 chrX_11315001 RAL-318 1551 chrX 11409513 11409537 chrX 11409599 11409623 4 86 1.0 0.0 0.5 2.7 110 chrX 11409513 3` UTR dlg1 + chrX 11409568 3` UTR dlg1 + chrX 11409623 3` UTR dlg1 + chrX_4_11405001 chrX_11405001 RAL-318 1552 chrX 11633415 11633448 chrX 11640469 11640502 297 12 7054 1.0 1.5 1.2 5.5 7087 chrX 11633415 intron Ptp10D + chrX 11636958 intron Ptp10D + chrX 11640502 intron Ptp10D + chrX_12_11635001 chrX_11635001 RAL-318 1553 chrX 11886451 11886473 chrX 11886554 11886583 7 106 5.0 4.0 4.5 1.3 132 chrX 11886451 intron CG10353 - chrX 11886517 intron CG10353 - chrX 11886583 intron CG10353 - chrX_7_11885001 chrX_11885001 RAL-318 1554 chrX 11922367 11922383 chrX 11922500 11922513 6 132 0.5 3.0 1.8 2.1 146 chrX 11922367 exon Sclp - chrX 11922440 intron Sclp - chrX 11922513 intron Sclp - chrX_6_11920001 chrX_11920001 RAL-318 1555 chrX 11936569 11936585 chrX 11936668 11936683 4 99 0.5 4.0 2.2 1.2 114 chrX 11936569 intron cac - chrX 11936626 intron cac - chrX 11936683 intron cac - chrX_4_11935001 chrX_11935001 RAL-318 1556 chrX 12053532 12053562 chrX 12054060 12054090 4 528 3.0 2.0 2.5 1.1 558 chrX 12053532 intron,intron CR43960 +,Ten-a + chrX 12053811 intron,intron CR43960 +,Ten-a + chrX 12054090 intron,intron CR43960 +,Ten-a + chrX_4_12050001 chrX_12050001 RAL-318 1557 chrX 12094054 12094068 chrX 12094130 12094159 7 89 0.5 3.5 2.0 2.3 105 chrX 12094054 intron,intron CR43960 +,Ten-a + chrX 12094106 intron,intron CR43960 +,Ten-a + chrX 12094159 intron,intron CR43960 +,Ten-a + chrX_7_12090001 chrX_12090001 RAL-318 1558 chrX 12277187 12277202 chrX 12277278 12277292 5 88 6.5 2.5 4.5 0.9 105 chrX 12277187 intron Ten-a + chrX 12277240 intron Ten-a + chrX 12277292 intron Ten-a + chrX_5_12275001 chrX_12275001 RAL-318 1559 chrX 12301955 12301991 chrX 12303260 12303294 X-element 12 1305 1.0 2.5 1.8 4.3 1339 chrX 12301955 intron Ten-a + chrX 12302624 intron Ten-a + chrX 12303294 intron Ten-a + chrX_12_12300001 chrX_12300001 RAL-318 1560 chrX 12375492 12375506 chrX 12375590 12375604 9 95 1.5 3.5 2.5 2.6 112 chrX 12375492 intergenic Ir11a - chrX 12375548 intergenic Ir11a - chrX 12375604 exon Ir11a - chrX_9_12375001 chrX_12375001 RAL-318 1561 chrX 12381554 12381577 chrX 12381642 12381658 5 84 2.5 2.0 2.2 1.6 104 chrX 12381554 intergenic not near genes chrX 12381606 intergenic not near genes chrX 12381658 intergenic not near genes chrX_5_12380001 chrX_12380001 RAL-318 1562 chrX 12752278 12752302 chrX 12752365 12752389 7 85 4.0 0.5 2.2 2.2 111 chrX 12752278 5` UTR CR44619 + chrX 12752334 5` UTR CR44619 + chrX 12752389 5` UTR CR44619 + chrX_7_12750001 chrX_12750001 RAL-318 1563 chrX 12971698 12971721 chrX 12971766 12971786 4 71 3.5 3.5 3.5 0.9 88 chrX 12971698 intron,exon CR43636 -,CG15721 + chrX 12971742 intron,exon CR43636 -,CG15721 + chrX 12971786 intron,exon CR43636 -,CG15721 + chrX_4_12970001 chrX_12970001 RAL-318 1564 chrX 12985973 12986005 chrX 12986068 12986101 12 96 2.5 3.5 3.0 3.0 128 chrX 12985973 intergenic not near genes chrX 12986037 intergenic not near genes chrX 12986101 intergenic not near genes chrX_12_12985001 chrX_12985001 RAL-318 1565 chrX 13172350 13172382 chrX 13172425 13172458 7 72 3.5 2.5 3.0 1.8 108 chrX 13172350 exon CG34411 - chrX 13172404 intron CG34411 - chrX 13172458 intron CG34411 - chrX_7_13170001 chrX_13170001 RAL-318 1566 chrX 13429462 13429494 chrX 13430611 13430643 jockey 12 1145 0.5 2.5 1.5 4.8 1181 chrX 13429462 intergenic not near genes chrX 13430052 intergenic not near genes chrX 13430643 intergenic not near genes chrX_12_13430001 chrX_13430001 RAL-318 1567 chrX 13442143 13442170 chrX 13442234 13442261 8 91 1.5 4.5 3.0 2.0 118 chrX 13442143 intergenic not near genes chrX 13442202 intergenic not near genes chrX 13442261 intergenic not near genes chrX_8_13440001 chrX_13440001 RAL-318 1568 chrX 13463648 13463672 chrX 13469225 13469249 mdg3 5 5577 2.0 0.0 1.0 2.5 5601 chrX 13463648 intron Neto + chrX 13466448 intron Neto + chrX 13469249 intron Neto + chrX_5_13465001 chrX_13465001 RAL-318 1569 chrX 13485691 13485721 chrX 13485770 13485800 8 75 2.5 2.5 2.5 2.3 109 chrX 13485691 intron Neto + chrX 13485746 intron Neto + chrX 13485800 intron Neto + chrX_8_13485001 chrX_13485001 RAL-318 1570 chrX 13934293 13934296 chrX 13934376 13934379 4 83 5.0 1.5 3.2 1.0 86 chrX 13934293 intron mamo - chrX 13934336 intron mamo - chrX 13934379 intron mamo - chrX_4_13930001 chrX_13930001 RAL-318 1571 chrX 14105033 14105052 chrX 14114172 14114195 roo 8 9146 3.0 7.5 5.2 1.3 9162 chrX 14105033 intergenic not near genes chrX 14109614 intergenic not near genes chrX 14114195 5` UTR CR44657 + chrX_8_14105001 chrX_14105001 RAL-318 1572 chrX 14131508 14131522 chrX 14131568 14131600 7 71 1.0 1.5 1.2 3.2 92 chrX 14131508 intergenic not near genes chrX 14131554 intergenic not near genes chrX 14131600 intergenic not near genes chrX_7_14130001 chrX_14130001 RAL-318 1573 chrX 14157596 14157620 chrX 14163251 14163277 297 11 5656 1.0 1.0 1.0 5.5 5681 chrX 14157596 intergenic not near genes chrX 14160436 intergenic not near genes chrX 14163277 intergenic not near genes chrX_11_14160001 chrX_14160001 RAL-318 1574 chrX 14333291 14333313 chrX 14333372 14333395 6 81 1.0 1.5 1.2 2.7 104 chrX 14333291 intron dpr8 + chrX 14333343 intron dpr8 + chrX 14333395 intron dpr8 + chrX_6_14330001 chrX_14330001 RAL-318 1575 chrX 14333822 14333846 chrX 14333920 14333925 5 94 1.0 1.5 1.2 2.3 103 chrX 14333822 intron dpr8 + chrX 14333874 intron dpr8 + chrX 14333925 intron dpr8 + chrX_5_14330001 chrX_14330001 RAL-318 1576 chrX 14579113 14579135 chrX 14579195 14579216 8 82 1.5 1.0 1.2 3.6 103 chrX 14579113 intergenic not near genes chrX 14579164 intergenic not near genes chrX 14579216 intergenic not near genes chrX_8_14575001 chrX_14575001 RAL-318 1577 chrX 14636470 14636493 chrX 14641897 14641934 I-element 6 5438 4.0 2.5 3.2 1.4 5464 chrX 14636470 intron NetA - chrX 14639202 intron NetA - chrX 14641934 intron NetA - chrX_6_14635001 chrX_14635001 RAL-318 1578 chrX 14649331 14649339 chrX 14649407 14649414 4 76 0.5 4.5 2.5 1.1 83 chrX 14649331 intron NetA - chrX 14649372 intron NetA - chrX 14649414 intron NetA - chrX_4_14645001 chrX_14645001 RAL-318 1579 chrX 14667416 14667436 chrX 14667503 14667523 8 85 4.0 4.5 4.2 1.5 107 chrX 14667416 intergenic not near genes chrX 14667470 intergenic not near genes chrX 14667523 intergenic not near genes chrX_8_14665001 chrX_14665001 RAL-318 1580 chrX 14778028 14778061 chrX 14782824 14782858 Doc 4 4797 0.0 2.0 1.0 2.0 4830 chrX 14778028 intergenic CG5347 + chrX 14780443 intergenic not near genes chrX 14782858 intergenic Ag5r2 - chrX_4_14780001 chrX_14780001 RAL-318 1581 chrX 15230290 15230312 chrX 15230630 15230652 4 340 3.0 2.5 2.8 1.1 362 chrX 15230290 intergenic CG9101 - chrX 15230471 intergenic not near genes chrX 15230652 intergenic not near genes chrX_4_15230001 chrX_15230001 RAL-318 1582 chrX 15247264 15247290 chrX 15247349 15247375 5 82 1.5 3.0 2.2 1.6 111 chrX 15247264 intergenic not near genes chrX 15247320 intergenic not near genes chrX 15247375 intergenic not near genes chrX_5_15245001 chrX_15245001 RAL-318 1583 chrX 15273715 15273732 chrX 15274874 15274897 1360 5 1164 5.0 5.0 5.0 0.8 1182 chrX 15273715 intergenic not near genes chrX 15274306 intergenic not near genes chrX 15274897 intergenic not near genes chrX_5_15270001 chrX_15270001 RAL-318 1584 chrX 15277636 15277669 chrX 15277721 15277754 4 85 2.5 1.5 2.0 1.3 118 chrX 15277636 intergenic not near genes chrX 15277695 intergenic not near genes chrX 15277754 intergenic not near genes chrX_4_15275001 chrX_15275001 RAL-318 1585 chrX 15358312 15358338 chrX 15358400 15358426 4 82 0.5 1.5 1.0 2.0 114 chrX 15358312 intron acj6 - chrX 15358369 intron acj6 - chrX 15358426 intron acj6 - chrX_4_15355001 chrX_15355001 RAL-318 1586 chrX 15413048 15413088 chrX 15417350 15417386 Juan 8 4298 2.5 2.5 2.5 2.3 4338 chrX 15413048 intron Cngl - chrX 15415217 intron Cngl - chrX 15417386 intron Cngl - chrX_8_15415001 chrX_15415001 RAL-318 1587 chrX 15429238 15429250 chrX 15429320 15429331 5 82 4.0 1.0 2.5 1.4 93 chrX 15429238 intron Cngl - chrX 15429284 intron Cngl - chrX 15429331 intron Cngl - chrX_5_15425001 chrX_15425001 RAL-318 1588 chrX 15435688 15435697 chrX 15436121 15436124 rover 4 432 1.0 8.0 4.5 0.7 436 chrX 15435688 intron Cngl - chrX 15435906 intron Cngl - chrX 15436124 intron Cngl - chrX_4_15435001 chrX_15435001 RAL-318 1589 chrX 15678052 15678066 chrX 15678112 15678143 8 69 3.0 3.5 3.2 1.9 91 chrX 15678052 intergenic CG12708 + chrX 15678098 intergenic CG12708 + chrX 15678143 intergenic CG12708 + chrX_8_15675001 chrX_15675001 RAL-318 1590 chrX 15898446 15898460 chrX 15898600 15898614 5 152 1.0 3.0 2.0 1.7 168 chrX 15898446 intron shi + chrX 15898530 intron shi + chrX 15898614 intron shi + chrX_5_15895001 chrX_15895001 RAL-318 1591 chrX 16154935 16154954 chrX 16155018 16155035 9 82 2.5 1.5 2.0 3.0 100 chrX 16154935 intergenic not near genes chrX 16154985 intergenic not near genes chrX 16155035 intergenic not near genes chrX_9_16150001 chrX_16150001 RAL-318 1592 chrX 16529435 16529444 chrX 16529526 16529555 4 106 0.0 1.5 0.8 2.2 120 chrX 16529435 intron para - chrX 16529495 intron para - chrX 16529555 intron para - chrX_4_16525001 chrX_16525001 RAL-318 1593 chrX 16650933 16650959 chrX 16651010 16651027 4 75 1.0 0.5 0.8 2.2 94 chrX 16650933 intergenic CG32573 +,CG42512 + chrX 16650980 intergenic CG32573 +,CG42512 + chrX 16651027 intergenic CG32573 +,CG42512 + chrX_4_16650001 chrX_16650001 RAL-318 1594 chrX 16689623 16689655 chrX 16689709 16689713 11 80 4.5 3.5 4.0 2.2 90 chrX 16689623 intron Sep4 - chrX 16689668 intron Sep4 - chrX 16689713 intron Sep4 - chrX_11_16685001 chrX_16685001 RAL-318 1595 chrX 16690461 16690475 chrX 16690538 16690538 5 73 1.5 4.0 2.8 1.3 77 chrX 16690461 intron Sep4 - chrX 16690500 intron Sep4 - chrX 16690538 intron Sep4 - chrX_5_16690001 chrX_16690001 RAL-318 1596 chrX 16785279 16785307 chrX 16785383 16785411 8 104 0.5 2.0 1.2 3.6 132 chrX 16785279 3` UTR CG9609 - chrX 16785345 3` UTR CG9609 - chrX 16785411 3` UTR CG9609 - chrX_8_16785001 chrX_16785001 RAL-318 1597 chrX 16788824 16788841 chrX 16789003 16789011 4 176 3.0 2.5 2.8 1.1 187 chrX 16788824 3` UTR Sap30 + chrX 16788918 3` UTR Sap30 + chrX 16789011 3` UTR Sap30 + chrX_4_16785001 chrX_16785001 RAL-318 1598 chrX 16833207 16833216 chrX 16833292 16833300 6 85 5.0 1.5 3.2 1.4 93 chrX 16833207 intron CG13004 - chrX 16833254 intron CG13004 - chrX 16833300 intron CG13004 - chrX_6_16830001 chrX_16830001 RAL-318 1599 chrX 17011966 17011999 chrX 17012048 17012082 9 80 3.5 5.0 4.2 1.7 116 chrX 17011966 intron CG45002 - chrX 17012024 intron CG45002 - chrX 17012082 intron CG45002 - chrX_9_17010001 chrX_17010001 RAL-318 1600 chrX 17061567 17061599 chrX 17061690 17061719 6 122 2.0 2.5 2.2 1.9 152 chrX 17061567 intron CG45002 - chrX 17061643 intron CG45002 - chrX 17061719 intron CG45002 - chrX_6_17060001 chrX_17060001 RAL-318 1601 chrX 17282874 17282904 chrX 17282952 17282982 7 75 3.5 0.5 2.0 2.3 108 chrX 17282874 intron CG5445 + chrX 17282928 5` UTR CG5445 + chrX 17282982 intron CG5445 + chrX_7_17280001 chrX_17280001 RAL-318 1602 chrX 17545003 17545038 chrX 17545085 17545120 15 81 4.0 1.0 2.5 4.3 117 chrX 17545003 intron CG43658 - chrX 17545062 intron CG43658 - chrX 17545120 intron CG43658 - chrX_15_17545001 chrX_17545001 RAL-318 1603 chrX 17680888 17680920 chrX 17680965 17680974 10 72 2.0 2.0 2.0 3.3 86 chrX 17680888 intron chas - chrX 17680931 intron chas - chrX 17680974 intron chas - chrX_10_17680001 chrX_17680001 RAL-318 1604 chrX 17782566 17782598 chrX 17782654 17782678 10 87 4.5 3.0 3.8 2.1 112 chrX 17782566 intergenic not near genes chrX 17782622 intergenic not near genes chrX 17782678 intergenic not near genes chrX_10_17780001 chrX_17780001 RAL-318 1605 chrX 18043600 18043612 chrX 18043668 18043685 6 75 2.0 4.0 3.0 1.5 85 chrX 18043600 intron Sh - chrX 18043642 intron Sh - chrX 18043685 intron Sh - chrX_6_18040001 chrX_18040001 RAL-318 1606 chrX 18194065 18194102 chrX 18194600 18194632 BS 7 534 4.0 2.0 3.0 1.8 567 chrX 18194065 intron Frq2 + chrX 18194348 intron Frq2 + chrX 18194632 intron Frq2 + chrX_7_18190001 chrX_18190001 RAL-318 1607 chrX 18322642 18322672 chrX 18322733 18322762 6 90 4.0 1.5 2.8 1.6 120 chrX 18322642 intergenic CG6123 - chrX 18322702 intergenic CG6123 - chrX 18322762 intergenic CG6123 - chrX_6_18320001 chrX_18320001 RAL-318 1608 chrX 18427380 18427407 chrX 18427791 18427818 8 411 2.5 1.0 1.8 2.9 438 chrX 18427380 intergenic CG42323 + chrX 18427599 intergenic not near genes chrX 18427818 intergenic not near genes chrX_8_18425001 chrX_18425001 RAL-318 1609 chrX 18555394 18555410 chrX 18556912 18556932 transib2 5 1518 2.5 3.5 3.0 1.2 1538 chrX 18555394 intron Bx + chrX 18556163 intron Bx + chrX 18556932 intron Bx + chrX_5_18555001 chrX_18555001 RAL-318 1610 chrX 18645015 18645047 chrX 18645113 18645144 7 97 1.5 3.0 2.2 2.2 129 chrX 18645015 intron Rip11 - chrX 18645080 intron Rip11 - chrX 18645144 intron Rip11 - chrX_7_18645001 chrX_18645001 RAL-318 1611 chrX 18746921 18746956 chrX 18746999 18747034 8 76 1.5 1.0 1.2 3.6 113 chrX 18746921 intron CG12609 - chrX 18746978 3` UTR CG12609 - chrX 18747034 3` UTR CG12609 - chrX_8_18745001 chrX_18745001 RAL-318 1612 chrX 18749872 18749899 chrX 18749956 18749969 4 80 2.5 0.5 1.5 1.6 97 chrX 18749872 intergenic not near genes chrX 18749920 intergenic not near genes chrX 18749969 intergenic not near genes chrX_4_18745001 chrX_18745001 RAL-318 1613 chrX 18896516 18896543 chrX 18896627 18896654 4 111 1.0 1.0 1.0 2.0 138 chrX 18896516 3` UTR CG7349 + chrX 18896585 intergenic CG7349 + chrX 18896654 intergenic CG7349 + chrX_4_18895001 chrX_18895001 RAL-318 1614 chrX 19014363 19014391 chrX 19014441 19014470 8 77 4.5 2.5 3.5 1.8 107 chrX 19014363 intron CG43759 + chrX 19014416 intron CG43759 + chrX 19014470 intron CG43759 + chrX_8_19010001 chrX_19010001 RAL-318 1615 chrX 19037971 19037983 chrX 19038100 19038103 6 127 6.0 1.5 3.8 1.2 132 chrX 19037971 intergenic not near genes chrX 19038037 intergenic not near genes chrX 19038103 intergenic not near genes chrX_6_19035001 chrX_19035001 RAL-318 1616 chrX 19080336 19080357 chrX 19080437 19080439 4 99 2.0 1.0 1.5 1.6 103 chrX 19080336 intergenic not near genes chrX 19080388 intergenic not near genes chrX 19080439 intergenic not near genes chrX_4_19080001 chrX_19080001 RAL-318 1617 chrX 19356987 19357005 chrX 19358428 19358446 NOF 4 1441 3.5 0.0 1.8 1.4 1459 chrX 19356987 intron kek5 + chrX 19357716 intron kek5 + chrX 19358446 intron kek5 + chrX_4_19355001 chrX_19355001 RAL-318 1618 chrX 19380168 19380184 chrX 19380408 19380425 pogo 4 241 3.0 1.0 2.0 1.3 257 chrX 19380168 intron kek5 + chrX 19380296 intron kek5 + chrX 19380425 intron kek5 + chrX_4_19380001 chrX_19380001 RAL-318 1619 chrX 19472133 19472151 chrX 19472703 19472718 jockey 6 566 2.0 3.0 2.5 1.7 585 chrX 19472133 intergenic kek5 + chrX 19472426 intergenic not near genes chrX 19472718 intergenic not near genes chrX_6_19470001 chrX_19470001 RAL-318 1620 chrX 19593952 19593977 chrX 19594037 19594049 7 83 1.5 4.0 2.8 1.8 97 chrX 19593952 exon CG14205 + chrX 19594000 intron CG14205 + chrX 19594049 intron CG14205 + chrX_7_19590001 chrX_19590001 RAL-318 1621 chrX 19662047 19662056 chrX 19662255 19662276 4 218 2.5 4.0 3.2 1.0 229 chrX 19662047 intron CG14223 - chrX 19662162 intron CG14223 - chrX 19662276 intron CG14223 - chrX_4_19660001 chrX_19660001 RAL-318 1622 chrX 19710078 19710099 chrX 19711857 19711882 S-element 4 1784 5.0 5.5 5.2 0.6 1804 chrX 19710078 intron meso18E - chrX 19710980 intron meso18E - chrX 19711882 intron meso18E - chrX_4_19710001 chrX_19710001 RAL-318 1623 chrX 19881949 19881977 chrX 19882042 19882070 7 92 2.0 1.0 1.5 2.8 121 chrX 19881949 intron Hers + chrX 19882010 intron Hers + chrX 19882070 intron Hers + chrX_7_19880001 chrX_19880001 RAL-318 1624 chrX 19992420 19992435 chrX 19992496 19992509 4 76 5.0 7.0 6.0 0.6 89 chrX 19992420 intergenic not near genes chrX 19992464 intergenic not near genes chrX 19992509 intergenic not near genes chrX_4_19990001 chrX_19990001 RAL-318 1625 chrX 20052787 20052808 chrX 20052871 20052889 5 79 3.0 1.5 2.2 1.6 102 chrX 20052787 intron Dop2R - chrX 20052838 intron Dop2R - chrX 20052889 intron Dop2R - chrX_5_20050001 chrX_20050001 RAL-318 1626 chrX 20069263 20069295 chrX 20069396 20069421 12 130 1.0 3.5 2.2 3.8 158 chrX 20069263 intergenic not near genes chrX 20069342 intergenic not near genes chrX 20069421 intergenic not near genes chrX_12_20065001 chrX_20065001 RAL-318 1627 chrX 20144850 20144875 chrX 20145019 20145045 8 170 2.0 2.5 2.2 2.5 195 chrX 20144850 intergenic not near genes chrX 20144948 intergenic not near genes chrX 20145045 intergenic not near genes chrX_8_20140001 chrX_20140001 RAL-318 1628 chrX 20312885 20312911 chrX 20312963 20312989 8 78 1.0 2.5 1.8 2.9 104 chrX 20312885 intron CG1504 - chrX 20312937 intron CG1504 - chrX 20312989 intron CG1504 - chrX_8_20310001 chrX_20310001 RAL-318 1629 chrX 20377328 20377333 chrX 20378795 20378800 hobo 5 1467 3.5 6.5 5.0 0.8 1472 chrX 20377328 intergenic not near genes chrX 20378064 intergenic not near genes chrX 20378800 intergenic not near genes chrX_5_20375001 chrX_20375001 RAL-318 1630 chrX 20457498 20457524 chrX 20457749 20457774 8 251 3.0 1.5 2.2 2.5 276 chrX 20457498 intron CG32506 + chrX 20457636 intron CG32506 + chrX 20457774 intron CG32506 + chrX_8_20455001 chrX_20455001 RAL-318 1631 chrX 20665061 20665088 chrX 20665147 20665174 6 86 4.0 3.0 3.5 1.3 113 chrX 20665061 intron CG1835 + chrX 20665118 intron CG1835 + chrX 20665174 intron CG1835 + chrX_6_20665001 chrX_20665001 RAL-318 1632 chrX 20710422 20710425 chrX 20710500 20710503 5 78 0.5 4.5 2.5 1.4 81 chrX 20710422 intergenic not near genes chrX 20710462 intergenic not near genes chrX 20710503 intergenic not near genes chrX_5_20710001 chrX_20710001 RAL-318 1633 chrX 21086128 21086151 chrX 21087157 21087180 jockey 9 1029 3.5 0.5 2.0 3.0 1052 chrX 21086128 intergenic not near genes chrX 21086654 intergenic not near genes chrX 21087180 intergenic not near genes chrX_9_21085001 chrX_21085001 RAL-318 1634 chrX 21428339 21428354 chrX 21428529 21428542 5 189 1.5 1.5 1.5 2.0 203 chrX 21428339 intron CG42343 - chrX 21428440 intron CG42343 - chrX 21428542 intron CG42343 - chrX_5_21425001 chrX_21425001 RAL-318 1635 chrX 21467030 21467043 chrX 21467098 21467127 5 79 3.0 3.0 3.0 1.2 97 chrX 21467030 intergenic CR45507 - chrX 21467078 intergenic CR45507 - chrX 21467127 3` UTR CR45507 - chrX_5_21465001 chrX_21465001 RAL-318 1636 chrX 22497022 22497038 chrX 22497100 22497120 6 78 1.5 1.5 1.5 2.4 98 chrX 22497022 intron l(1)G0196 + chrX 22497071 intron l(1)G0196 + chrX 22497120 intron l(1)G0196 + chrX_6_22495001 chrX_22495001 RAL-318 1637 chrX 22574813 22574824 chrX 22575047 22575058 6 234 1.5 2.0 1.8 2.1 245 chrX 22574813 intergenic not near genes chrX 22574936 intergenic not near genes chrX 22575058 intergenic not near genes chrX_6_22570001 chrX_22570001 RAL-318 1638 chrX 22564558 22564577 chrX 22575132 22575149 jockey 5 10573 10.5 4.5 7.5 0.6 10591 chrX 22564558 intergenic not near genes chrX 22569854 intergenic not near genes chrX 22575149 intergenic not near genes chrX_5_22565001 chrX_22565001 RAL-318 1639 chrX 22660578 22660591 chrX 22660653 22660675 6 82 4.5 0.0 2.2 1.9 97 chrX 22660578 intron CR44997 + chrX 22660626 intron CR44997 + chrX 22660675 intron CR44997 + chrX_6_22660001 chrX_22660001 RAL-318 1640 chrX 22665806 22665825 chrX 22665881 22665904 6 76 1.5 1.0 1.2 2.7 98 chrX 22665806 intron CR44997 + chrX 22665855 intron CR44997 + chrX 22665904 intron CR44997 + chrX_6_22665001 chrX_22665001 RAL-318 1641 chrX 22771518 22771539 chrX 22774809 22774830 297 6 3291 1.0 4.5 2.8 1.6 3312 chrX 22771518 intron CR44997 + chrX 22773174 intron CR44997 + chrX 22774830 intron CR44997 + chrX_6_22770001 chrX_22770001 RAL-318 1642 chrX 22797010 22797019 chrX 22797095 22797104 4 85 0.0 0.5 0.2 3.3 94 chrX 22797010 intron CR44997 + chrX 22797057 intron CR44997 + chrX 22797104 intron CR44997 + chrX_4_22795001 chrX_22795001 RAL-318 1643 chrX 22922525 22922546 chrX 22922605 22922615 4 76 3.0 2.5 2.8 1.1 90 chrX 22922525 intergenic not near genes chrX 22922570 intergenic not near genes chrX 22922615 intergenic not near genes chrX_4_22920001 chrX_22920001 RAL-318 1644 chrX 22996313 22996339 chrX 23003547 23003573 roo 4 7234 1.5 2.0 1.8 1.4 7260 chrX 22996313 intron,intron stnA -,stnB - chrX 22999943 intron,intron stnA -,stnB - chrX 23003573 intron,intron stnA -,stnB - chrX_4_22995001 chrX_22995001 RAL-318 1645 chrY 975598 975827 chrY 975715 975934 6 91 135.5 90.0 112.8 0.1 336 chrY 975598 intergenic not near genes chrY 975766 intergenic not near genes chrY 975934 intergenic not near genes chrY_6_975001 chrY_975001 RAL-318