SV# Chr Chr_coord_5p Chr_coord_3p TE TE_coord_start TE_coord_end Reads_collapsed Chr_Coord_Dist Symmetry avg_blat_score Norm_RefGen_Reads Coverage_Ratio classification comments insert_code loci_code Sym_score libname 1 chr2L 162066 162134 1360 3386 3381 7 68 '4-3 71.96 1.3 3.0 intron spen + chr2L_7_160001 chr2L_160001 0.57 RAL-313 2 chr2L 455824 455863 P-element 6 2854 6 39 '2-4 39.16 2.4 1.8 exon CG4133 + chr2L_6_455001 chr2L_455001 0.33 RAL-313 3 chr2L 843101 843164 Tabor 6855 7322 4 63 '2-2 57.33 2.8 1.1 intron drongo - chr2L_4_840001 chr2L_840001 0.50 RAL-313 4 chr2L 852806 852854 P-element 2877 20 5 48 '2-3 44.91 1.5 2.0 5` UTR kraken + chr2L_5_850001 chr2L_850001 0.40 RAL-313 5 chr2L 1837532 1837601 blood 368 2 4 69 '1-3 59.89 0.7 2.4 intron wry + chr2L_4_1835001 chr2L_1835001 0.25 RAL-313 6 chr2L 2682302 2682319 jockey 21 36 4 17 '3-1 60.34 1.9 1.4 intron CG31690 + chr2L_4_2680001 chr2L_2680001 0.75 RAL-313 7 chr2L 3436391 3436655 opus 7047 7497 4 264 '1-3 69.54 0.3 3.1 intergenic not near genes chr2L_4_3435001 chr2L_3435001 0.25 RAL-313 8 chr2L 3908485 3908509 jockey 4695 4671 4 24 '2-2 67.13 0.3 3.1 intron fred - chr2L_4_3905001 chr2L_3905001 0.50 RAL-313 9 chr2L 5488242 5488292 3S18 5782 6092 6 50 '3-3 58.36 0.2 5.0 intergenic not near genes chr2L_6_5485001 chr2L_5485001 0.50 RAL-313 10 chr2L 5578636 5578685 mdg1 15 7442 5 49 '3-2 63.62 0.6 3.1 intergenic not near genes chr2L_5_5575001 chr2L_5575001 0.60 RAL-313 11 chr2L 5687795 5687849 Tirant 18 8495 4 54 '2-2 54.99 1.4 1.7 intergenic not near genes chr2L_4_5685001 chr2L_5685001 0.50 RAL-313 12 chr2L 5879901 5879931 mdg3 5467 5497 5 30 '4-1 64.24 1.1 2.4 intergenic rau - chr2L_5_5875001 chr2L_5875001 0.80 RAL-313 13 chr2L 6833592 6833664 Tirant 392 5 6 72 '4-2 62.66 1.3 2.6 intron sens-2 + chr2L_6_6830001 chr2L_6830001 0.67 RAL-313 14 chr2L 7636649 7636681 roo 264 9043 5 32 '4-1 54.13 0.3 3.8 intergenic CR44799 +,CR44800 + chr2L_5_7635001 chr2L_7635001 0.80 RAL-313 15 chr2L 8205504 8205558 1360 24 1 6 54 '5-1 70.82 1.9 2.1 3` UTR CR44120 - chr2L_6_8205001 chr2L_8205001 0.83 RAL-313 16 chr2L 8362800 8362816 pogo 3 19 5 16 '2-3 62.57 0.8 2.8 intergenic CG7627 - chr2L_5_8360001 chr2L_8360001 0.40 RAL-313 17 chr2L 9282407 9282470 hopper 12 1409 5 63 '3-2 59.46 0.9 2.6 intron Ggamma30A + chr2L_5_9280001 chr2L_9280001 0.60 RAL-313 18 chr2L 9694225 9694287 FB 6 9 6 62 '3-3 61.72 1.9 2.1 intron Pka-C1 - chr2L_6_9690001 chr2L_9690001 0.50 RAL-313 19 chr2L 10184040 10184073 hobo 2906 12 4 33 '2-2 67.33 0.3 3.1 intron Sur - chr2L_4_10180001 chr2L_10180001 0.50 RAL-313 20 chr2L 10305825 10305885 Burdock 21 6390 4 60 '2-2 68.33 1.4 1.7 intron CG5390 - chr2L_4_10305001 chr2L_10305001 0.50 RAL-313 21 chr2L 12836530 12836596 412 493 15 6 66 '4-2 57.56 1.3 2.6 intergenic not near genes chr2L_6_12835001 chr2L_12835001 0.67 RAL-313 22 chr2L 12968102 12968156 blood 7370 8 7 54 '2-5 62.09 1.0 3.5 intergenic CG16800 + chr2L_7_12965001 chr2L_12965001 0.29 RAL-313 23 chr2L 13060264 13060330 P-element 4 8 5 66 '2-3 59.10 1.3 2.2 intergenic CG9932 - chr2L_5_13060001 chr2L_13060001 0.40 RAL-313 24 chr2L 13158309 13158336 jockey 4696 4669 5 27 '1-4 66.11 2.7 1.4 intergenic Pk34A + chr2L_5_13155001 chr2L_13155001 0.20 RAL-313 25 chr2L 13359734 13359816 mdg1 7043 416 7 82 '3-4 59.95 0.3 5.4 intergenic CG9377 - chr2L_7_13355001 chr2L_13355001 0.43 RAL-313 26 chr2L 13780473 13780535 pogo 2089 10 4 62 '2-2 62.00 0.5 2.7 intergenic p38b +,CG9008 - chr2L_4_13780001 chr2L_13780001 0.50 RAL-313 27 chr2L 14385748 14385821 copia 4874 254 9 73 '6-3 62.32 1.6 3.5 intergenic not near genes chr2L_9_14385001 chr2L_14385001 0.67 RAL-313 28 chr2L 14777197 14777267 Stalker2 7244 7636 6 70 '3-3 58.89 0.2 5.0 intergenic not near genes chr2L_6_14775001 chr2L_14775001 0.50 RAL-313 29 chr2L 14909672 14909734 pogo 14 2093 7 62 '1-6 61.66 0.2 5.8 intron CG42313 - chr2L_7_14905001 chr2L_14905001 0.14 RAL-313 30 chr2L 14941383 14941446 hobo 4 2928 6 63 '3-3 67.78 1.4 2.5 intron CG42313 - chr2L_6_14940001 chr2L_14940001 0.50 RAL-313 31 chr2L 16791454 16791521 P-element 5 5 5 67 '3-2 51.74 1.3 2.2 intergenic CG17928 + chr2L_5_16790001 chr2L_16790001 0.60 RAL-313 32 chr2L 17240980 17241031 hobo 2929 17 4 51 '2-2 58.27 0.8 2.2 intron beat-IIIc - chr2L_4_17240001 chr2L_17240001 0.50 RAL-313 33 chr2L 18188447 18188472 Doc 26 1 4 25 '2-2 60.00 3.8 0.8 intron CG42750 - chr2L_4_18185001 chr2L_18185001 0.50 RAL-313 34 chr2L 18212708 18212770 blood 16 7384 5 62 '3-2 56.00 0.9 2.6 intron CG42750 - chr2L_5_18210001 chr2L_18210001 0.60 RAL-313 35 chr2L 19324459 19324528 opus 3 7491 7 69 '3-4 70.99 0.5 4.7 5` UTR CR45700 + chr2L_7_19320001 chr2L_19320001 0.43 RAL-313 36 chr2L 19425391 19425457 Tirant 8123 397 13 66 '4-9 68.48 1.7 4.8 intron,intron,intron Pax -,CG13085 +,CG16771 + chr2L_13_19425001 chr2L_19425001 0.31 RAL-313 37 chr2L 20035780 20035842 copia 24 261 4 62 '3-1 68.33 0.2 3.3 intron sNPF + chr2L_4_20035001 chr2L_20035001 0.75 RAL-313 38 chr2L 20175413 20175462 roo 9047 7 5 49 '4-1 74.67 0.4 3.6 intergenic not near genes chr2L_5_20175001 chr2L_20175001 0.80 RAL-313 39 chr2L 20341302 20341345 jockey 4981 9 5 43 '1-4 57.33 0.9 2.6 intron spir + chr2L_5_20340001 chr2L_20340001 0.20 RAL-313 40 chr2L 20537870 20537940 412 495 19 7 70 '6-1 66.67 1.1 3.3 intergenic not near genes chr2L_7_20535001 chr2L_20535001 0.86 RAL-313 41 chr2L 20629527 20629585 roo 9063 8678 4 58 '3-1 59.00 1.1 1.9 intergenic not near genes chr2L_4_20625001 chr2L_20625001 0.75 RAL-313 42 chr2L 21292654 21292723 Tabor 477 4 10 69 '5-5 71.50 1.8 3.6 intron,intron Mio -,Gr39a + chr2L_10_21290001 chr2L_21290001 0.50 RAL-313 43 chr2L 22282830 22282890 pogo 2089 12 8 60 '3-5 62.42 2.2 2.5 intergenic not near genes chr2L_8_22280001 chr2L_22280001 0.38 RAL-313 44 chr2L 22747279 22747331 transib2 6 2804 4 52 '2-2 65.60 1.0 2.0 intron CG40006 - chr2L_4_22745001 chr2L_22745001 0.50 RAL-313 45 chr2R 557683 557741 gtwin 7387 20 5 58 '4-1 58.60 0.2 4.2 intron CG40378 + chr2R_5_555001 chr2R_555001 0.80 RAL-313 46 chr2R 1365696 1365744 Transpac 12 5207 4 48 '2-2 60.52 2.5 1.1 intron l(2)41Ab + chr2R_4_1365001 chr2R_1365001 0.50 RAL-313 47 chr2R 1683367 1683389 1731 312 4602 6 22 '5-1 60.34 1.7 2.2 intron CG41520 + chr2R_6_1680001 chr2R_1680001 0.83 RAL-313 48 chr2R 2317748 2317765 Max-element 23 8241 6 17 '2-4 61.33 0.8 3.3 intergenic not near genes chr2R_6_2315001 chr2R_2315001 0.33 RAL-313 49 chr2R 5254676 5254738 roo 406 8680 7 62 '6-1 68.57 1.6 2.7 5` UTR CR41443 + chr2R_7_5250001 chr2R_5250001 0.86 RAL-313 50 chr2R 5485062 5485132 1360 1 3381 7 70 '5-2 69.91 1.3 3.0 intron CG30440 - chr2R_7_5485001 chr2R_5485001 0.71 RAL-313 51 chr2R 5851139 5851207 roo 13 409 13 68 '5-8 64.04 1.3 5.7 intron dpr12 + chr2R_13_5850001 chr2R_5850001 0.38 RAL-313 52 chr2R 5869091 5869159 Transpac 304 8 7 68 '1-6 67.05 2.0 2.3 intergenic not near genes chr2R_7_5865001 chr2R_5865001 0.14 RAL-313 53 chr2R 7225918 7225970 hopper 1394 1408 4 52 '1-3 58.74 1.0 2.0 intergenic not near genes chr2R_4_7225001 chr2R_7225001 0.25 RAL-313 54 chr2R 7247763 7247808 1360 3357 3387 6 45 '1-5 67.55 2.2 1.9 intergenic not near genes chr2R_6_7245001 chr2R_7245001 0.17 RAL-313 55 chr2R 7546253 7546317 hopper 109 9 4 64 '3-1 51.67 0.9 2.1 intron Corin + chr2R_4_7545001 chr2R_7545001 0.75 RAL-313 56 chr2R 8068781 8068816 P-element 2869 24 8 35 '5-3 39.58 2.6 2.2 intron lig + chr2R_8_8065001 chr2R_8065001 0.62 RAL-313 57 chr2R 8279992 8280009 roo 399 9045 5 17 '4-1 68.00 1.1 2.4 intergenic not near genes chr2R_5_8275001 chr2R_8275001 0.80 RAL-313 58 chr2R 8315096 8315150 roo 401 8684 8 54 '7-1 61.34 1.8 2.9 intergenic not near genes chr2R_8_8315001 chr2R_8315001 0.88 RAL-313 59 chr2R 9339968 9340001 X-element 4332 4299 7 33 '5-2 66.77 1.3 3.0 intron,intron CG13739 -,CG13954 - chr2R_7_9335001 chr2R_9335001 0.71 RAL-313 60 chr2R 9948277 9948336 jockey 4986 4670 6 59 '2-4 61.32 1.3 2.6 intron Mef2 - chr2R_6_9945001 chr2R_9945001 0.33 RAL-313 61 chr2R 10658556 10658621 pogo 2091 9 6 65 '3-3 59.85 1.0 3.0 intergenic not near genes chr2R_6_10655001 chr2R_10655001 0.50 RAL-313 62 chr2R 11575031 11575174 INE-1 149 134 6 143 '2-4 60.22 0.1 5.5 intergenic not near genes chr2R_6_11575001 chr2R_11575001 0.33 RAL-313 63 chr2R 11582027 11582069 jockey 7 4967 8 42 '6-2 64.69 1.4 3.3 exon tou - chr2R_8_11580001 chr2R_11580001 0.75 RAL-313 64 chr2R 12185377 12185407 accord 31 1 4 30 '1-3 64.33 2.8 1.1 3` UTR,3` UTR CG13175 +,CG33964 + chr2R_4_12185001 chr2R_12185001 0.25 RAL-313 65 chr2R 13009623 13009666 1360 3382 29 7 43 '5-2 64.34 0.7 4.1 intergenic not near genes chr2R_7_13005001 chr2R_13005001 0.71 RAL-313 66 chr2R 13626365 13626416 Tabor 7231 30 8 51 '5-3 58.33 0.2 6.7 intron fas + chr2R_8_13625001 chr2R_13625001 0.62 RAL-313 67 chr2R 13946838 13946903 Tabor 473 4 5 65 '2-3 62.13 0.7 2.9 3` UTR AGO1 - chr2R_5_13945001 chr2R_13945001 0.40 RAL-313 68 chr2R 14539850 14539883 roo 394 8697 4 33 '3-1 68.34 2.1 1.3 intron ttv + chr2R_4_14535001 chr2R_14535001 0.75 RAL-313 69 chr2R 14721459 14721475 hobo 8 24 7 16 '3-4 61.33 1.5 2.8 intergenic not near genes chr2R_7_14720001 chr2R_14720001 0.43 RAL-313 70 chr2R 15373507 15373553 1360 22 3378 10 46 '5-5 71.35 0.7 5.9 intergenic not near genes chr2R_10_15370001 chr2R_15370001 0.50 RAL-313 71 chr2R 15444706 15444730 hopper 1406 1382 5 24 '3-2 60.80 3.2 1.2 intron CG43729 + chr2R_5_15440001 chr2R_15440001 0.60 RAL-313 72 chr2R 15463234 15463305 Tabor 7322 8 6 71 '3-3 59.55 1.3 2.6 intron CG43729 + chr2R_6_15460001 chr2R_15460001 0.50 RAL-313 73 chr2R 16102598 16102651 P-element 2879 2872 5 53 '2-3 48.30 1.2 2.3 5` UTR CG8414 - chr2R_5_16100001 chr2R_16100001 0.40 RAL-313 74 chr2R 16388469 16388521 hobo 2914 1 8 52 '5-3 69.89 1.4 3.3 intron Sema-2b + chr2R_8_16385001 chr2R_16385001 0.62 RAL-313 75 chr2R 16618750 16618806 pogo 2079 6 6 56 '2-4 67.55 1.1 2.9 intron CG5065 + chr2R_6_16615001 chr2R_16615001 0.33 RAL-313 76 chr2R 17315353 17315372 1360 3374 3355 4 19 '1-3 65.33 0.4 2.9 intron mbl + chr2R_4_17315001 chr2R_17315001 0.25 RAL-313 77 chr2R 18024326 18024348 jockey 12 35 4 22 '3-1 58.88 3.7 0.9 intergenic not near genes chr2R_4_18020001 chr2R_18020001 0.75 RAL-313 78 chr2R 20172000 20172029 R1A1-element 5334 5303 5 29 '4-1 62.91 2.0 1.7 intergenic not near genes chr2R_5_20170001 chr2R_20170001 0.80 RAL-313 79 chr2R 20290669 20290738 roo 8676 409 6 69 '3-3 64.56 1.1 2.9 intron Cpr56F - chr2R_6_20290001 chr2R_20290001 0.50 RAL-313 80 chr2R 20853128 20853198 Tirant 10 395 7 70 '4-3 59.73 1.5 2.8 intergenic not near genes chr2R_7_20850001 chr2R_20850001 0.57 RAL-313 81 chr2R 21228526 21228588 FB 4 11 4 62 '1-3 64.00 0.9 2.1 intron ASPP - chr2R_4_21225001 chr2R_21225001 0.25 RAL-313 82 chr2R 21359527 21359577 roo 8669 9046 5 50 '3-2 66.87 1.6 1.9 intron cv-2 - chr2R_5_21355001 chr2R_21355001 0.60 RAL-313 83 chr2R 21875343 21875387 Ivk 10 5362 4 44 '2-2 63.53 2.2 1.2 intron Fili + chr2R_4_21875001 chr2R_21875001 0.50 RAL-313 84 chr2R 21947116 21947168 412 21 7538 5 52 '3-2 70.67 1.4 2.1 intergenic not near genes chr2R_5_21945001 chr2R_21945001 0.60 RAL-313 85 chr2R 24787837 24787873 Tabor 6855 465 6 36 '5-1 54.19 1.0 3.0 intergenic Reg-5 -,key - chr2R_6_24785001 chr2R_24785001 0.83 RAL-313 86 chr3L 480163 480201 Tabor 7293 12 6 38 '3-3 65.50 1.0 3.0 intron klar - chr3L_6_480001 chr3L_480001 0.50 RAL-313 87 chr3L 950459 950477 hobo 8 26 4 18 '3-1 58.66 2.9 1.0 intron Glut1 + chr3L_4_950001 chr3L_950001 0.75 RAL-313 88 chr3L 1337135 1337198 blood 7377 6 8 63 '4-4 65.05 1.2 3.6 intron l(3)02640 + chr3L_8_1335001 chr3L_1335001 0.50 RAL-313 89 chr3L 1653889 1653956 1360 3383 3383 12 67 '5-7 65.03 0.3 9.2 3` UTR CG7970 + chr3L_12_1650001 chr3L_1650001 0.42 RAL-313 90 chr3L 2010606 2010658 roo 386 8670 4 52 '3-1 66.00 0.8 2.2 3` UTR CR44535 - chr3L_4_2010001 chr3L_2010001 0.75 RAL-313 91 chr3L 2189169 2189224 Tabor 3 7302 7 55 '5-2 62.08 2.9 1.8 3` UTR CG5707 - chr3L_7_2185001 chr3L_2185001 0.71 RAL-313 92 chr3L 2485911 2485953 jockey 4971 4682 4 42 '1-3 59.68 0.7 2.4 intron CG45186 + chr3L_4_2485001 chr3L_2485001 0.25 RAL-313 93 chr3L 2678467 2678511 roo 8690 398 6 44 '2-4 59.69 0.4 4.3 intron Fife - chr3L_6_2675001 chr3L_2675001 0.33 RAL-313 94 chr3L 2821225 2821267 hopper 28 1405 4 42 '2-2 68.92 1.4 1.7 intron CG43444 - chr3L_4_2820001 chr3L_2820001 0.50 RAL-313 95 chr3L 3798593 3798626 1360 3373 30 5 33 '4-1 71.46 0.5 3.3 intron CG32264 - chr3L_5_3795001 chr3L_3795001 0.80 RAL-313 96 chr3L 4007135 4007205 Transpac 4919 5217 6 70 '3-3 61.37 1.8 2.1 intergenic not near genes chr3L_6_4005001 chr3L_4005001 0.50 RAL-313 97 chr3L 4744847 4744894 HMS-Beagle2 7177 17 4 47 '1-3 62.00 1.1 1.9 intron RhoGEF64C + chr3L_4_4740001 chr3L_4740001 0.25 RAL-313 98 chr3L 6975139 6975205 FB 5 8 5 66 '1-4 69.47 1.3 2.2 intron Galphai - chr3L_5_6975001 chr3L_6975001 0.20 RAL-313 99 chr3L 7223814 7223840 jockey 71 4987 4 26 '2-2 62.00 1.2 1.8 5` UTR CR45410 + chr3L_4_7220001 chr3L_7220001 0.50 RAL-313 100 chr3L 7528500 7528523 P-element 2883 2860 4 23 '3-1 51.67 0.3 3.1 intergenic lqf +,ltl + chr3L_4_7525001 chr3L_7525001 0.75 RAL-313 101 chr3L 7815180 7815248 hobo 4 2934 9 68 '6-3 65.22 1.2 4.1 3` UTR Pdp1 - chr3L_9_7815001 chr3L_7815001 0.67 RAL-313 102 chr3L 8264694 8264725 jockey 36 5 7 31 '6-1 62.62 0.8 3.9 intron Dscam4 + chr3L_7_8260001 chr3L_8260001 0.86 RAL-313 103 chr3L 9735577 9735598 Tabor 6863 3 5 21 '2-3 65.33 0.0 5.0 intron CG42268 - chr3L_5_9735001 chr3L_9735001 0.40 RAL-313 104 chr3L 10808949 10808996 roo 9041 8668 5 47 '3-2 73.54 1.1 2.4 intergenic not near genes chr3L_5_10805001 chr3L_10805001 0.60 RAL-313 105 chr3L 11941404 11941453 blood 7011 7357 8 49 '6-2 71.35 3.3 1.9 intergenic not near genes chr3L_8_11940001 chr3L_11940001 0.75 RAL-313 106 chr3L 12777254 12777370 Doc2-element 218 238 4 116 '2-2 77.52 1.1 1.9 exon CG32106 - chr3L_4_12775001 chr3L_12775001 0.50 RAL-313 107 chr3L 12802406 12802490 roo 411 8663 5 84 '2-3 63.62 1.1 2.4 intron Atg1 - chr3L_5_12800001 chr3L_12800001 0.40 RAL-313 108 chr3L 12806364 12806416 pogo 2083 14 5 52 '3-2 68.64 1.4 2.1 intron Sap130 + chr3L_5_12805001 chr3L_12805001 0.60 RAL-313 109 chr3L 12863708 12863755 Transpac 4939 296 4 47 '2-2 65.23 1.5 1.6 intergenic not near genes chr3L_4_12860001 chr3L_12860001 0.50 RAL-313 110 chr3L 12864591 12864609 412 7527 7509 5 18 '2-3 69.60 2.6 1.4 intergenic not near genes chr3L_5_12860001 chr3L_12860001 0.40 RAL-313 111 chr3L 12899238 12899303 hobo 2707 17 5 65 '3-2 63.73 1.5 2.0 intergenic not near genes chr3L_5_12895001 chr3L_12895001 0.60 RAL-313 112 chr3L 13261496 13261549 Tabor 7311 6854 9 53 '4-5 53.94 1.4 3.8 intron caps + chr3L_9_13260001 chr3L_13260001 0.44 RAL-313 113 chr3L 13298604 13298656 opus 479 11 5 52 '2-3 66.13 2.0 1.7 5` UTR CR45254 + chr3L_5_13295001 chr3L_13295001 0.40 RAL-313 114 chr3L 13745588 13745625 roo 9039 12 4 37 '1-3 65.33 0.2 3.3 intron bru-3 - chr3L_4_13745001 chr3L_13745001 0.25 RAL-313 115 chr3L 15363853 15363907 roo 9046 8665 4 54 '3-1 72.33 0.8 2.2 intergenic not near genes chr3L_4_15360001 chr3L_15360001 0.75 RAL-313 116 chr3L 15976557 15976606 1360 3365 3383 5 49 '2-3 67.14 0.6 3.1 intron brm - chr3L_5_15975001 chr3L_15975001 0.40 RAL-313 117 chr3L 16177296 16177356 mdg3 5497 19 5 60 '3-2 62.95 1.3 2.2 intergenic CR45754 +,CR45755 - chr3L_5_16175001 chr3L_16175001 0.60 RAL-313 118 chr3L 16315475 16315536 blood 7382 7024 11 61 '5-6 65.40 1.4 4.6 intergenic CG13062 + chr3L_11_16315001 chr3L_16315001 0.45 RAL-313 119 chr3L 16439638 16439712 roo 408 6 6 74 '4-2 68.60 0.2 5.0 intron,intron CG33158 +,dsx-c73A - chr3L_6_16435001 chr3L_16435001 0.67 RAL-313 120 chr3L 16821820 16821852 Tabor 7305 30 4 32 '3-1 63.53 0.5 2.7 intron CG13024 - chr3L_4_16820001 chr3L_16820001 0.75 RAL-313 121 chr3L 16919757 16919825 R1A1-element 4879 5327 10 68 '6-4 64.47 2.1 3.2 intron Lmpt + chr3L_10_16915001 chr3L_16915001 0.60 RAL-313 122 chr3L 16973398 16973437 S-element 171 1699 4 39 '1-3 63.22 0.7 2.4 intron Exn + chr3L_4_16970001 chr3L_16970001 0.25 RAL-313 123 chr3L 17140745 17140760 Stalker2 7258 7273 4 15 '1-3 58.00 0.8 2.2 intron Rbp6 - chr3L_4_17140001 chr3L_17140001 0.25 RAL-313 124 chr3L 17589088 17589158 pogo 11 2098 7 70 '1-6 66.59 1.1 3.3 intron Eip74EF - chr3L_7_17585001 chr3L_17585001 0.14 RAL-313 125 chr3L 17673688 17673756 412 10 490 6 68 '3-3 64.45 0.5 4.0 exon CG34251 + chr3L_6_17670001 chr3L_17670001 0.50 RAL-313 126 chr3L 17779083 17779147 17.6 486 6941 6 64 '3-3 67.33 0.2 5.0 intergenic not near genes chr3L_6_17775001 chr3L_17775001 0.50 RAL-313 127 chr3L 18382491 18382541 Tabor 6870 486 6 50 '2-4 62.16 2.1 1.9 intergenic not near genes chr3L_6_18380001 chr3L_18380001 0.33 RAL-313 128 chr3L 18550280 18550333 17.6 6953 7416 6 53 '2-4 73.55 1.4 2.5 intergenic not near genes chr3L_6_18550001 chr3L_18550001 0.33 RAL-313 129 chr3L 18787374 18787415 roo 9040 8669 7 41 '2-5 64.92 1.2 3.2 intron ftz-f1 - chr3L_7_18785001 chr3L_18785001 0.29 RAL-313 130 chr3L 19784000 19784065 roo 398 8669 4 65 '3-1 66.52 0.5 2.7 intron,intron CG42637 -,Gyc76C - chr3L_4_19780001 chr3L_19780001 0.75 RAL-313 131 chr3L 20037778 20037842 hobo 2933 6 9 64 '2-7 61.61 1.6 3.5 intergenic not near genes chr3L_9_20035001 chr3L_20035001 0.22 RAL-313 132 chr3L 20144570 20144625 Transpac 310 27 4 55 '1-3 74.66 2.3 1.2 intergenic not near genes chr3L_4_20140001 chr3L_20140001 0.25 RAL-313 133 chr3L 21059550 21059622 FB 1 4 7 72 '2-5 71.43 0.3 5.4 intron siz + chr3L_7_21055001 chr3L_21055001 0.29 RAL-313 134 chr3L 21291519 21291578 roo 8673 396 4 59 '1-3 63.00 2.2 1.2 intergenic Cpr78Ca - chr3L_4_21290001 chr3L_21290001 0.25 RAL-313 135 chr3L 21872974 21873013 roo 9060 22 7 39 '3-4 65.05 0.7 4.1 intron mub + chr3L_7_21870001 chr3L_21870001 0.43 RAL-313 136 chr3L 22350054 22350071 mdg1 398 7453 4 17 '2-2 60.33 0.8 2.2 intron Ten-m - chr3L_4_22350001 chr3L_22350001 0.50 RAL-313 137 chr3L 23069342 23069417 flea 4762 254 5 75 '3-2 66.93 0.3 3.8 intergenic not near genes chr3L_5_23065001 chr3L_23065001 0.60 RAL-313 138 chr3L 23282749 23282797 Juan 4203 11 6 48 '1-5 61.08 1.3 2.6 intron nAChRalpha4 + chr3L_6_23280001 chr3L_23280001 0.17 RAL-313 139 chr3R 4412714 4412789 roo 407 4 5 75 '2-3 69.60 0.3 3.8 intron CG32944 - chr3R_5_4410001 chr3R_4410001 0.40 RAL-313 140 chr3R 5693931 5693976 Transpac 5214 22 6 45 '3-3 65.11 1.8 2.1 intron plx + chr3R_6_5690001 chr3R_5690001 0.50 RAL-313 141 chr3R 6428784 6428855 Tabor 479 3 5 71 '3-2 61.52 0.6 3.1 intron gpp + chr3R_5_6425001 chr3R_6425001 0.60 RAL-313 142 chr3R 7482894 7482921 jockey 7 33 6 27 '3-3 59.75 1.8 2.1 intergenic not near genes chr3R_6_7480001 chr3R_7480001 0.50 RAL-313 143 chr3R 7681640 7681694 Tabor 3 461 7 54 '6-1 63.24 2.3 2.1 intron Nlg1 + chr3R_7_7680001 chr3R_7680001 0.86 RAL-313 144 chr3R 9003740 9003787 Max-element 8239 8509 7 47 '4-3 62.43 1.1 3.3 intergenic CG31100 -,CG11980 + chr3R_7_9000001 chr3R_9000001 0.57 RAL-313 145 chr3R 9174300 9174372 hobo 4 2937 9 72 '5-4 66.07 1.6 3.5 intron pum - chr3R_9_9170001 chr3R_9170001 0.56 RAL-313 146 chr3R 9289304 9289378 opus 113 7494 4 74 '3-1 66.78 1.1 1.9 intergenic not near genes chr3R_4_9285001 chr3R_9285001 0.75 RAL-313 147 chr3R 10192835 10192891 hobo 3 2920 6 56 '4-2 65.05 3.4 1.4 intron Syn + chr3R_6_10190001 chr3R_10190001 0.67 RAL-313 148 chr3R 10923032 10923057 jockey 7 32 4 25 '2-2 63.82 2.8 1.1 intergenic not near genes chr3R_4_10920001 chr3R_10920001 0.50 RAL-313 149 chr3R 11142202 11142275 Max-element 8239 297 11 73 '5-6 63.40 1.9 3.8 intergenic not near genes chr3R_11_11140001 chr3R_11140001 0.45 RAL-313 150 chr3R 11151839 11151886 mdg3 5475 5262 7 47 '3-4 63.49 2.8 1.8 3` UTR Ugt86Di - chr3R_7_11150001 chr3R_11150001 0.43 RAL-313 151 chr3R 11569119 11569190 P-element 1 6 7 71 '1-6 56.40 2.2 2.2 intergenic Mrp4 + chr3R_7_11565001 chr3R_11565001 0.14 RAL-313 152 chr3R 12913092 12913155 hobo 2936 12 6 63 '1-5 62.51 0.2 5.0 intergenic not near genes chr3R_6_12910001 chr3R_12910001 0.17 RAL-313 153 chr3R 13119007 13119069 jockey 4668 4989 4 62 '3-1 59.90 1.1 1.9 intron timeout + chr3R_4_13115001 chr3R_13115001 0.75 RAL-313 154 chr3R 13284847 13284908 roo 396 7 10 61 '6-4 65.50 1.1 4.8 intergenic CG15888 -,CG8630 + chr3R_10_13280001 chr3R_13280001 0.60 RAL-313 155 chr3R 13437167 13437183 hopper 12 28 4 16 '1-3 66.22 1.9 1.4 intergenic not near genes chr3R_4_13435001 chr3R_13435001 0.25 RAL-313 156 chr3R 14096118 14096178 hobo 1 2922 10 60 '7-3 63.33 2.0 3.3 intron CCHa1 - chr3R_10_14095001 chr3R_14095001 0.70 RAL-313 157 chr3R 15525723 15525772 mdg1 10 400 5 49 '1-4 62.93 0.4 3.6 intergenic not near genes chr3R_5_15525001 chr3R_15525001 0.20 RAL-313 158 chr3R 15549553 15549628 roo 406 8664 9 75 '6-3 68.58 1.5 3.6 exon CG18516 - chr3R_9_15545001 chr3R_15545001 0.67 RAL-313 159 chr3R 15724007 15724087 Max-element 301 8235 6 80 '2-4 61.31 0.4 4.3 intergenic not near genes chr3R_6_15720001 chr3R_15720001 0.33 RAL-313 160 chr3R 15811855 15811878 opus 499 476 4 23 '2-2 64.34 1.3 1.7 intron,3` UTR alpha-Man-IIb +,CR45211 - chr3R_4_15810001 chr3R_15810001 0.50 RAL-313 161 chr3R 15878755 15878834 roo 8663 406 5 79 '2-3 68.00 1.8 1.8 intergenic not near genes chr3R_5_15875001 chr3R_15875001 0.40 RAL-313 162 chr3R 16072546 16072608 297 6583 376 6 62 '4-2 66.66 0.2 5.0 intron Mhcl - chr3R_6_16070001 chr3R_16070001 0.67 RAL-313 163 chr3R 16130064 16130124 roo 405 17 6 60 '5-1 69.55 1.3 2.6 intron Sb + chr3R_6_16130001 chr3R_16130001 0.83 RAL-313 164 chr3R 16159858 16159894 blood 7357 13 4 36 '1-3 63.00 1.3 1.7 intron CG6006 + chr3R_4_16155001 chr3R_16155001 0.25 RAL-313 165 chr3R 16191961 16192021 roo 8667 391 5 60 '3-2 66.67 1.1 2.4 intron sra + chr3R_5_16190001 chr3R_16190001 0.60 RAL-313 166 chr3R 16667373 16667452 Tabor 484 1 9 79 '5-4 58.22 1.0 4.5 intron Ubx - chr3R_9_16665001 chr3R_16665001 0.56 RAL-313 167 chr3R 17362533 17362597 Stalker2 7642 7256 6 64 '3-3 60.12 1.6 2.3 intron beat-IIa - chr3R_6_17360001 chr3R_17360001 0.50 RAL-313 168 chr3R 17673760 17673826 FB 5 6 5 66 '3-2 61.87 1.2 2.3 exon,3` UTR ald +,alt - chr3R_5_17670001 chr3R_17670001 0.60 RAL-313 169 chr3R 19581310 19581361 Transpac 9 5208 6 51 '5-1 60.55 1.2 2.7 intron Dys + chr3R_6_19580001 chr3R_19580001 0.83 RAL-313 170 chr3R 19939042 19939070 jockey 32 5 4 28 '2-2 64.55 1.8 1.4 intron Hs6st - chr3R_4_19935001 chr3R_19935001 0.50 RAL-313 171 chr3R 22025083 22025140 S-element 1686 8 5 57 '1-4 65.01 1.7 1.9 intron CG6028 - chr3R_5_22025001 chr3R_22025001 0.20 RAL-313 172 chr3R 22188509 22188567 roo 408 8686 5 58 '2-3 70.93 1.3 2.2 intron SKIP + chr3R_5_22185001 chr3R_22185001 0.40 RAL-313 173 chr3R 22801443 22801506 Transpac 290 4918 7 63 '2-5 70.48 0.2 5.8 intergenic not near genes chr3R_7_22800001 chr3R_22800001 0.29 RAL-313 174 chr3R 25050079 25050143 P-element 7 7 10 64 '8-2 45.50 1.6 3.8 5` UTR CG11791 + chr3R_10_25050001 chr3R_25050001 0.80 RAL-313 175 chr3R 25321171 25321192 Tabor 6863 3 7 21 '5-2 60.19 2.0 2.3 3` UTR CG10562 - chr3R_7_25320001 chr3R_25320001 0.71 RAL-313 176 chr3R 25392899 25392946 blood 364 7032 8 47 '6-2 63.04 0.4 5.7 intron Fur1 - chr3R_8_25390001 chr3R_25390001 0.75 RAL-313 177 chr3R 25842599 25842652 opus 490 20 4 53 '2-2 64.23 0.4 2.9 3` UTR alpha4GT2 + chr3R_4_25840001 chr3R_25840001 0.50 RAL-313 178 chr3R 25933581 25933636 297 13 6961 4 55 '2-2 63.67 2.1 1.3 intron CCAP-R - chr3R_4_25930001 chr3R_25930001 0.50 RAL-313 179 chr3R 26544237 26544305 FB 5 3 7 68 '6-1 62.67 0.8 3.9 intron scrib + chr3R_7_26540001 chr3R_26540001 0.86 RAL-313 180 chr3R 27158863 27158935 Tabor 6848 7324 12 72 '5-7 59.56 0.9 6.3 intron grass + chr3R_12_27155001 chr3R_27155001 0.42 RAL-313 181 chr3R 28282401 28282458 pogo 2098 22 5 57 '4-1 67.29 0.9 2.6 intergenic CG34436 + chr3R_5_28280001 chr3R_28280001 0.80 RAL-313 182 chr3R 28287703 28287732 jockey 34 5 6 29 '3-3 60.71 1.4 2.5 intergenic not near genes chr3R_6_28285001 chr3R_28285001 0.50 RAL-313 183 chr3R 28783253 28783336 blood 7009 377 6 83 '4-2 66.14 1.0 3.0 intergenic not near genes chr3R_6_28780001 chr3R_28780001 0.67 RAL-313 184 chr3R 29240340 29240407 mdg3 5497 5265 11 67 '10-1 62.34 2.0 3.7 5` UTR CG31427 - chr3R_11_29240001 chr3R_29240001 0.91 RAL-313 185 chr3R 31192431 31192489 pogo 6 2081 4 58 '3-1 63.91 0.6 2.5 intron mesh - chr3R_4_31190001 chr3R_31190001 0.75 RAL-313 186 chr3R 31256528 31256577 roo 8667 9043 8 49 '7-1 67.90 0.0 8.0 3` UTR spn-F + chr3R_8_31255001 chr3R_31255001 0.88 RAL-313 187 chr3R 31256980 31257047 transib2 2819 9 7 67 '2-5 66.29 1.3 3.0 intergenic spn-F + chr3R_7_31255001 chr3R_31255001 0.29 RAL-313 188 chrX 1423335 1423364 blood 7038 7010 6 29 '1-5 62.37 0.9 3.2 intron futsch + chrX_6_1420001 chrX_1420001 0.17 RAL-313 189 chrX 1824280 1824354 roo 8668 407 6 74 '3-3 67.49 0.8 3.3 intron CG42666 + chrX_6_1820001 chrX_1820001 0.50 RAL-313 190 chrX 2745168 2745223 FB 21 1 4 55 '3-1 66.67 0.6 2.5 intron kirre + chrX_4_2745001 chrX_2745001 0.75 RAL-313 191 chrX 2758432 2758496 roo 13 404 4 64 '2-2 69.00 1.6 1.5 intron kirre + chrX_4_2755001 chrX_2755001 0.50 RAL-313 192 chrX 2771374 2771427 roo 8682 399 5 53 '3-2 66.23 0.8 2.8 intron kirre + chrX_5_2770001 chrX_2770001 0.60 RAL-313 193 chrX 4854161 4854226 Transpac 293 4918 5 65 '2-3 72.44 1.2 2.3 intron CG42594 + chrX_5_4850001 chrX_4850001 0.40 RAL-313 194 chrX 5519344 5519402 roo 8667 9051 5 58 '4-1 63.91 0.2 4.2 intergenic not near genes chrX_5_5515001 chrX_5515001 0.80 RAL-313 195 chrX 5776869 5776966 roo 8664 409 8 97 '3-5 51.96 0.5 5.3 intron CG42699 + chrX_8_5775001 chrX_5775001 0.38 RAL-313 196 chrX 5922536 5922587 Tabor 7314 19 5 51 '2-3 62.31 1.2 2.3 intron CG3726 + chrX_5_5920001 chrX_5920001 0.40 RAL-313 197 chrX 6129761 6129784 roo 8664 8687 4 23 '3-1 65.71 1.0 2.0 intron Ca-alpha1T - chrX_4_6125001 chrX_6125001 0.75 RAL-313 198 chrX 8785172 8785221 hopper 1392 9 5 49 '1-4 60.80 0.6 3.1 intron Lim1 - chrX_5_8785001 chrX_8785001 0.20 RAL-313 199 chrX 10289159 10289233 S-element 7 1713 6 74 '2-4 63.68 0.9 3.2 intron alpha-Man-I - chrX_6_10285001 chrX_10285001 0.33 RAL-313 200 chrX 10682898 10682964 pogo 11 2094 4 66 '1-3 64.66 0.5 2.7 intron X11Lbeta + chrX_4_10680001 chrX_10680001 0.25 RAL-313 201 chrX 11523517 11523579 roo 8661 9049 6 62 '3-3 67.56 1.2 2.7 intron Drak + chrX_6_11520001 chrX_11520001 0.50 RAL-313 202 chrX 11723596 11723676 mdg3 245 5252 5 80 '2-3 64.19 1.2 2.3 3` UTR Tango10 + chrX_5_11720001 chrX_11720001 0.40 RAL-313 203 chrX 11848567 11848594 I-element 2 29 4 27 '2-2 66.00 0.9 2.1 intergenic not near genes chrX_4_11845001 chrX_11845001 0.50 RAL-313 204 chrX 12166614 12166682 roo 8665 397 4 68 '3-1 68.34 0.7 2.4 intron Ten-a + chrX_4_12165001 chrX_12165001 0.75 RAL-313 205 chrX 12431471 12431525 Tirant 8133 395 5 54 '2-3 71.14 0.6 3.1 intergenic not near genes chrX_5_12430001 chrX_12430001 0.40 RAL-313 206 chrX 13276603 13276664 Transpac 5212 4923 9 61 '1-8 63.85 1.6 3.5 intron HDAC4 - chrX_9_13275001 chrX_13275001 0.11 RAL-313 207 chrX 14520316 14520393 Transpac 4920 5224 8 77 '4-4 65.42 0.9 4.2 intergenic not near genes chrX_8_14520001 chrX_14520001 0.50 RAL-313 208 chrX 15356529 15356582 hobo 13 2927 6 53 '4-2 61.91 1.4 2.5 intron acj6 - chrX_6_15355001 chrX_15355001 0.67 RAL-313 209 chrX 16876352 16876419 pogo 2088 4 4 67 '1-3 62.00 1.0 2.0 5` UTR CG13003 - chrX_4_16875001 chrX_16875001 0.25 RAL-313 210 chrX 17915151 17915208 roo 390 4 6 57 '2-4 64.80 0.2 5.0 intron CG6847 + chrX_6_17915001 chrX_17915001 0.33 RAL-313 211 chrX 19159963 19160022 Burdock 6148 6380 6 59 '3-3 65.47 0.9 3.2 intron RhoGAP18B - chrX_6_19155001 chrX_19155001 0.50 RAL-313 212 chrX 20124498 20124556 roo 5 9054 8 58 '6-2 68.33 0.6 5.0 intron CG34331 + chrX_8_20120001 chrX_20120001 0.75 RAL-313 213 chrX 21243359 21243380 17.6 7398 492 4 21 '2-2 62.33 1.0 2.0 intron CG32521 - chrX_4_21240001 chrX_21240001 0.50 RAL-313 214 chrX 22792567 22792641 roo 409 8671 4 74 '2-2 69.00 1.5 1.6 intron CR44997 + chrX_4_22790001 chrX_22790001 0.50 RAL-313 215 chrY 975886 975901 1360 23 3384 5 15 '2-3 63.89 39.1 0.1 intergenic not near genes chrY_5_975001 chrY_975001 0.40 RAL-313