SV#	Chr_5p	Chr_coord_5p_start	Chr_coord_5p_end	Chr_3p	Chr_coord_3p_start	Chr_coord_3p_end	repName	Reads_collapsed	avg_del_len	RefGen_3prime	Refgen_5prime	RefGen_Avg	Coverage_Ratio	size	Chr_5p	Chr_coord_5p	classification_5p	comment_5p	Chr_mid	Chr_coord_mid	classification_mid	comment_mid	Chr_3p	Chr_coord_3p	classification_3p	comment_3p	depletion_code	loci_code	libname
1	chr2L	47464	47484	chr2L	52569	52589	jockey	8	5105	0.5	3.0	1.8	2.9	5125	chr2L	47464	intron	Cda5 -	chr2L	50026	intron	Cda5 -	chr2L	52589	intron	Cda5 -	chr2L_8_50001	chr2L_50001	RAL-313
3	chr2L	770470	770484	chr2L	772251	772265	Bari1	5	1780	0.0	0.5	0.2	4.2	1795	chr2L	770470	intergenic	not near genes	chr2L	771368	intergenic	not near genes	chr2L	772265	intergenic	CR44614 +	chr2L_5_770001	chr2L_770001	RAL-313
30	chr2L	6426858	6426884	chr2L	6445118	6445143	roo	5	18260	0.0	1.5	0.8	2.8	18285	chr2L	6426858	3` UTR	CG9527 -	chr2L	6436000	intron	CG9527 -	chr2L	6445143	exon	CG9527 -	chr2L_5_6435001	chr2L_6435001	RAL-313
37	chr2L	8452419	8452440	chr2L	8461590	8461611	roo	5	9171	0.0	1.5	0.8	2.8	9192	chr2L	8452419	intron	fu12 -	chr2L	8457015	intron	fu12 -	chr2L	8461611	intron	fu12 -	chr2L_5_8455001	chr2L_8455001	RAL-313
38	chr2L	8723119	8723145	chr2L	8731496	8731522	Tirant	5	8377	0.0	1.0	0.5	3.3	8403	chr2L	8723119	intron	raw -	chr2L	8727320	intron	raw -	chr2L	8731522	intron	raw -	chr2L_5_8725001	chr2L_8725001	RAL-313
42	chr2L	9393512	9393528	chr2L	9396479	9396495	jockey	5	2967	0.5	1.5	1.0	2.5	2983	chr2L	9393512	intron	Shawl -	chr2L	9395004	intron	Shawl -	chr2L	9396495	intron	Shawl -	chr2L_5_9395001	chr2L_9395001	RAL-313
45	chr2L	10156320	10156352	chr2L	10163790	10163820	blood	8	7470	2.0	0.0	1.0	4.0	7500	chr2L	10156320	intron,3` UTR	CG44153 -,CG4839 +	chr2L	10160070	intron	CG44153 -	chr2L	10163820	intron	CG44153 -	chr2L_8_10160001	chr2L_10160001	RAL-313
51	chr2L	11563637	11563663	chr2L	11568840	11568866	copia	5	5204	1.0	0.0	0.5	3.3	5229	chr2L	11563637	intergenic	not near genes	chr2L	11566252	intergenic	not near genes	chr2L	11568866	intergenic	not near genes	chr2L_5_11565001	chr2L_11565001	RAL-313
57	chr2L	12739190	12739205	chr2L	12743971	12743986	Doc	4	4781	0.0	3.0	1.5	1.6	4796	chr2L	12739190	intron	MRP +	chr2L	12741588	intron	MRP +	chr2L	12743986	exon	MRP +	chr2L_4_12740001	chr2L_12740001	RAL-313
58	chr2L	12861695	12861721	chr2L	12863162	12863182	hobo	5	1466	0.5	0.5	0.5	3.3	1487	chr2L	12861695	intergenic	not near genes	chr2L	12862438	intergenic	not near genes	chr2L	12863182	intergenic	not near genes	chr2L_5_12860001	chr2L_12860001	RAL-313
61	chr2L	13405648	13405674	chr2L	13410445	13410470	Doc	9	4797	1.5	2.0	1.8	3.2	4822	chr2L	13405648	exon	CG7110 +	chr2L	13408059	intron	CG7110 +	chr2L	13410470	intron	CG7110 +	chr2L_9_13405001	chr2L_13405001	RAL-313
62	chr2L	13481448	13481470	chr2L	13482055	13482077	jockey	4	607	0.5	0.5	0.5	2.7	629	chr2L	13481448	intron	CG42784 +	chr2L	13481762	intron	CG42784 +	chr2L	13482077	intron	CG42784 +	chr2L_4_13480001	chr2L_13480001	RAL-313
64	chr2L	13853095	13853111	chr2L	13862245	13862261	roo	5	9150	1.5	0.5	1.0	2.5	9166	chr2L	13853095	intron	CenG1A +	chr2L	13857678	intron	CenG1A +	chr2L	13862261	intron	CenG1A +	chr2L_5_13855001	chr2L_13855001	RAL-313
66	chr2L	14803881	14803906	chr2L	14809084	14809108	copia	5	5203	2.0	0.0	1.0	2.5	5227	chr2L	14803881	intergenic	not near genes	chr2L	14806494	intergenic	not near genes	chr2L	14809108	intergenic	not near genes	chr2L_5_14805001	chr2L_14805001	RAL-313
67	chr2L	14889957	14889988	chr2L	14890382	14890413	jockey	5	425	1.0	1.0	1.0	2.5	456	chr2L	14889957	intergenic	not near genes	chr2L	14890185	intergenic	not near genes	chr2L	14890413	intergenic	not near genes	chr2L_5_14890001	chr2L_14890001	RAL-313
75	chr2L	16280252	16280288	chr2L	16281420	16281456	1360	4	1168	0.0	0.0	0.0	4.0	1204	chr2L	16280252	intron	crp -	chr2L	16280854	intron	crp -	chr2L	16281456	intron	crp -	chr2L_4_16280001	chr2L_16280001	RAL-313
85	chr2L	17951946	17951960	chr2L	17953413	17953427	hobo	6	1467	0.0	1.5	0.8	3.3	1481	chr2L	17951946	intergenic	CR44398 -,CR44397 -	chr2L	17952686	intergenic	not near genes	chr2L	17953427	intergenic	not near genes	chr2L_6_17950001	chr2L_17950001	RAL-313
86	chr2L	18051878	18051898	chr2L	18061025	18061045	roo	6	9146	0.5	2.0	1.2	2.7	9167	chr2L	18051878	intron	rdo +	chr2L	18056462	intron	rdo +	chr2L	18061045	intron	rdo +	chr2L_6_18055001	chr2L_18055001	RAL-313
92	chr2L	19345038	19345050	chr2L	19357247	19357259	blood	4	12209	0.5	1.0	0.8	2.2	12221	chr2L	19345038	intron	dnt -	chr2L	19351148	intron	dnt -	chr2L	19357259	intron	dnt -	chr2L_4_19350001	chr2L_19350001	RAL-313
98	chr2L	19737361	19737383	chr2L	19740824	19740852	1360	5	3467	2.0	1.5	1.8	1.8	3491	chr2L	19737361	intergenic	Nf-YB +	chr2L	19739106	intergenic	not near genes	chr2L	19740852	intergenic	not near genes	chr2L_5_19735001	chr2L_19735001	RAL-313
104	chr2L	20272120	20272143	chr2L	20282831	20282854	copia	11	10711	0.5	2.0	1.2	5.0	10734	chr2L	20272120	intergenic	not near genes	chr2L	20277487	intergenic	not near genes	chr2L	20282854	intergenic	not near genes	chr2L_11_20275001	chr2L_20275001	RAL-313
106	chr2L	20576224	20576252	chr2L	20583692	20583720	blood	4	7468	0.5	2.5	1.5	1.6	7496	chr2L	20576224	intergenic	not near genes	chr2L	20579972	intergenic	not near genes	chr2L	20583720	3` UTR	CR44909 -	chr2L_4_20575001	chr2L_20575001	RAL-313
110	chr2L	20976649	20976673	chr2L	20981464	20981488	X-element	4	4815	0.0	1.0	0.5	2.7	4839	chr2L	20976649	intron	CG42238 -	chr2L	20979068	intron	CG42238 -	chr2L	20981488	intron	CG42238 -	chr2L_4_20975001	chr2L_20975001	RAL-313
111	chr2L	21597034	21597050	chr2L	21604777	21604794	roo	4	7744	0.5	0.5	0.5	2.7	7760	chr2L	21597034	intergenic	not near genes	chr2L	21600914	intergenic	not near genes	chr2L	21604794	intergenic	not near genes	chr2L_4_21600001	chr2L_21600001	RAL-313
113	chr2L	22548930	22548930	chr2L	22550154	22550155	1360	4	1225	0.0	1.0	0.5	2.7	1225	chr2L	22548930	intergenic	CG17490 +	chr2L	22549542	intergenic	not near genes	chr2L	22550155	intergenic	CG17493 +	chr2L_4_22545001	chr2L_22545001	RAL-313
116	chr2L	22679800	22679830	chr2L	22684572	22684602	F-element	6	4771	1.0	5.5	3.2	1.4	4802	chr2L	22679800	intron	CG40006 -	chr2L	22682201	intron	CG40006 -	chr2L	22684602	intron	CG40006 -	chr2L_6_22680001	chr2L_22680001	RAL-313
117	chr2R	552758	552785	chr2R	553976	554003	1360	4	1218	3.0	0.5	1.8	1.4	1245	chr2R	552758	intron	CG40378 +	chr2R	553380	intron	CG40378 +	chr2R	554003	intron	CG40378 +	chr2R_4_550001	chr2R_550001	RAL-313
118	chr2R	4622963	4622985	chr2R	4624122	4624144	1360	4	1158	0.5	2.0	1.2	1.8	1181	chr2R	4622963	intergenic	CR44101 -	chr2R	4623554	intergenic	not near genes	chr2R	4624144	intergenic	not near genes	chr2R_4_4620001	chr2R_4620001	RAL-313
120	chr2R	5417994	5418027	chr2R	5420626	5420658	Burdock	6	2632	0.0	1.0	0.5	4.0	2664	chr2R	5417994	intron	laccase2 +	chr2R	5419326	intron	laccase2 +	chr2R	5420658	intron	laccase2 +	chr2R_6_5415001	chr2R_5415001	RAL-313
122	chr2R	5869277	5869299	chr2R	5874353	5874375	flea	8	5076	0.0	2.0	1.0	4.0	5098	chr2R	5869277	intergenic	not near genes	chr2R	5871826	intergenic	not near genes	chr2R	5874375	intergenic	not near genes	chr2R_8_5870001	chr2R_5870001	RAL-313
124	chr2R	7139949	7139956	chr2R	7141441	7141448	hopper2	4	1492	1.0	3.0	2.0	1.3	1499	chr2R	7139949	intergenic	not near genes	chr2R	7140698	intergenic	not near genes	chr2R	7141448	intergenic	not near genes	chr2R_4_7140001	chr2R_7140001	RAL-313
128	chr2R	7869187	7869198	chr2R	7873973	7873984	Doc	5	4786	0.5	1.0	0.8	2.8	4797	chr2R	7869187	intron	Dgk -	chr2R	7871586	intron	Dgk -	chr2R	7873984	intron	Dgk -	chr2R_5_7870001	chr2R_7870001	RAL-313
134	chr2R	9871044	9871073	chr2R	9871530	9871559	roo	5	486	0.0	0.0	0.0	5.0	515	chr2R	9871044	intron	cbx -	chr2R	9871302	intron	cbx -	chr2R	9871559	intron,5` UTR	cbx -,CG18446 +	chr2R_5_9870001	chr2R_9870001	RAL-313
136	chr2R	9945435	9945474	chr2R	9945631	9945669	BS	5	196	0.5	0.0	0.2	4.2	234	chr2R	9945435	intron	Mef2 -	chr2R	9945552	intron	Mef2 -	chr2R	9945669	intron	Mef2 -	chr2R_5_9945001	chr2R_9945001	RAL-313
137	chr2R	10005874	10005878	chr2R	10007038	10007043	1360	4	1164	1.0	3.0	2.0	1.3	1169	chr2R	10005874	intron	Pka-R2 -	chr2R	10006458	intron	Pka-R2 -	chr2R	10007043	intron	Pka-R2 -	chr2R_4_10005001	chr2R_10005001	RAL-313
143	chr2R	11297621	11297648	chr2R	11301942	11301968	flea	6	4320	0.5	0.0	0.2	5.0	4347	chr2R	11297621	intergenic	CG42336 -	chr2R	11299794	intergenic	not near genes	chr2R	11301968	5` UTR	CG7741 +	chr2R_6_11295001	chr2R_11295001	RAL-313
144	chr2R	11415522	11415548	chr2R	11418670	11418696	opus	6	3149	1.0	0.5	0.8	3.3	3174	chr2R	11415522	intron	Drip -	chr2R	11417109	intron	Drip -	chr2R	11418696	intron	Drip -	chr2R_6_11415001	chr2R_11415001	RAL-313
145	chr2R	11472652	11472678	chr2R	11473845	11473875	pogo	9	1196	2.0	3.0	2.5	2.6	1223	chr2R	11472652	intergenic	not near genes	chr2R	11473264	intergenic	not near genes	chr2R	11473875	intergenic	not near genes	chr2R_9_11470001	chr2R_11470001	RAL-313
150	chr2R	12501693	12501714	chr2R	12503854	12503876	Rt1c	5	2162	2.0	0.0	1.0	2.5	2183	chr2R	12501693	intron	fdl -	chr2R	12502784	intron	fdl -	chr2R	12503876	intron	fdl -	chr2R_5_12500001	chr2R_12500001	RAL-313
152	chr2R	12789292	12789328	chr2R	12797655	12797691	roo	7	8363	1.0	1.5	1.2	3.2	8399	chr2R	12789292	intron,3` UTR	sca +,CR45137 -	chr2R	12793492	intron,intron	sca +,CR45137 -	chr2R	12797691	intron,3` UTR	sca +,CR45137 -	chr2R_7_12790001	chr2R_12790001	RAL-313
154	chr2R	13136848	13136863	chr2R	13141646	13141661	Doc	4	4798	1.0	2.5	1.8	1.4	4813	chr2R	13136848	exon	Cap-G +	chr2R	13139254	intron	Cap-G +	chr2R	13141661	intron	Cap-G +	chr2R_4_13135001	chr2R_13135001	RAL-313
161	chr2R	14467305	14467323	chr2R	14476463	14476481	roo	4	9158	1.5	1.5	1.5	1.6	9176	chr2R	14467305	intergenic	not near genes	chr2R	14471893	intergenic	not near genes	chr2R	14476481	5` UTR	CR44462 +	chr2R_4_14470001	chr2R_14470001	RAL-313
163	chr2R	14889207	14889234	chr2R	14897815	14897842	Max-element	7	8608	1.0	0.0	0.5	4.7	8635	chr2R	14889207	intergenic	Cyp6a8 -	chr2R	14893524	intergenic	not near genes	chr2R	14897842	intergenic	not near genes	chr2R_7_14890001	chr2R_14890001	RAL-313
166	chr2R	15084978	15084999	chr2R	15092027	15092047	297	6	7049	2.0	0.5	1.2	2.7	7069	chr2R	15084978	intergenic	not near genes	chr2R	15088512	intergenic	not near genes	chr2R	15092047	5` UTR	CR44457 +	chr2R_6_15085001	chr2R_15085001	RAL-313
167	chr2R	15119333	15119340	chr2R	15127814	15127821	Tirant	8	8481	0.0	2.5	1.2	3.6	8488	chr2R	15119333	intron	chn +	chr2R	15123577	intron	chn +	chr2R	15127821	intron	chn +	chr2R_8_15120001	chr2R_15120001	RAL-313
171	chr2R	17236512	17236538	chr2R	17241716	17241742	copia	4	5204	0.5	2.0	1.2	1.8	5230	chr2R	17236512	intron	mbl +	chr2R	17239127	intron	mbl +	chr2R	17241742	intron	mbl +	chr2R_4_17235001	chr2R_17235001	RAL-313
173	chr2R	17784029	17784057	chr2R	17784270	17784298	pogo	5	241	0.0	2.5	1.2	2.3	269	chr2R	17784029	intergenic	mir-31a -	chr2R	17784164	intergenic	mir-31a -	chr2R	17784298	intergenic	mir-31a -	chr2R_5_17780001	chr2R_17780001	RAL-313
181	chr2R	20088009	20088025	chr2R	20088117	20088133	1360	5	108	0.0	0.5	0.2	4.2	124	chr2R	20088009	intergenic	not near genes	chr2R	20088071	intergenic	not near genes	chr2R	20088133	intergenic	not near genes	chr2R_5_20085001	chr2R_20085001	RAL-313
183	chr2R	21753082	21753114	chr2R	21753567	21753599	roo	5	485	1.0	0.5	0.8	2.8	517	chr2R	21753082	intergenic	not near genes	chr2R	21753340	intergenic	not near genes	chr2R	21753599	intergenic	not near genes	chr2R_5_21750001	chr2R_21750001	RAL-313
184	chr2R	21809531	21809555	chr2R	21817771	21817795	roo	7	8240	0.0	0.5	0.2	5.8	8264	chr2R	21809531	intergenic	not near genes	chr2R	21813663	intergenic	not near genes	chr2R	21817795	intergenic	not near genes	chr2R_7_21810001	chr2R_21810001	RAL-313
192	chr2R	22774963	22774987	chr2R	22775382	22775405	jockey	4	419	3.0	1.0	2.0	1.3	442	chr2R	22774963	intron	CG42260 -	chr2R	22775184	intron	CG42260 -	chr2R	22775405	intron	CG42260 -	chr2R_4_22775001	chr2R_22775001	RAL-313
205	chr2R	24727889	24727893	chr2R	24735397	24735401	mdg1	5	7508	3.0	1.5	2.2	1.6	7512	chr2R	24727889	intron	Mid1 -	chr2R	24731645	intron	Mid1 -	chr2R	24735401	intron	Mid1 -	chr2R_5_24730001	chr2R_24730001	RAL-313
208	chr3L	789913	789942	chr3L	790398	790427	roo	6	485	0.5	1.0	0.8	3.3	514	chr3L	789913	intergenic	not near genes	chr3L	790170	intergenic	not near genes	chr3L	790427	intergenic	not near genes	chr3L_6_790001	chr3L_790001	RAL-313
209	chr3L	858002	858011	chr3L	866483	866492	Tirant	4	8481	3.5	1.0	2.2	1.2	8490	chr3L	858002	intergenic	not near genes	chr3L	862247	intergenic	not near genes	chr3L	866492	intergenic	CG12502 +	chr3L_4_860001	chr3L_860001	RAL-313
210	chr3L	925177	925210	chr3L	932603	932636	mdg1	4	7426	0.5	0.5	0.5	2.7	7459	chr3L	925177	intron	Glut1 +	chr3L	928906	intron	Glut1 +	chr3L	932636	intron	Glut1 +	chr3L_4_925001	chr3L_925001	RAL-313
211	chr3L	1219606	1219623	chr3L	1227339	1227355	412	5	7733	1.0	0.5	0.8	2.8	7749	chr3L	1219606	intron	mwh +	chr3L	1223480	intron	mwh +	chr3L	1227355	intron	mwh +	chr3L_5_1220001	chr3L_1220001	RAL-313
220	chr3L	3475084	3475104	chr3L	3475528	3475548	jockey	7	444	0.0	3.0	1.5	2.8	464	chr3L	3475084	intron	CG42324 +	chr3L	3475316	intron	CG42324 +	chr3L	3475548	intron	CG42324 +	chr3L_7_3475001	chr3L_3475001	RAL-313
221	chr3L	3601297	3601328	chr3L	3606608	3606639	copia	6	5311	1.5	0.5	1.0	3.0	5342	chr3L	3601297	intron	Eip63E +	chr3L	3603968	intron	Eip63E +	chr3L	3606639	intron	Eip63E +	chr3L_6_3600001	chr3L_3600001	RAL-313
228	chr3L	4901130	4901144	chr3L	4907320	4907334	diver	4	6190	0.5	1.0	0.8	2.2	6204	chr3L	4901130	intergenic	CG13704 +	chr3L	4904232	intergenic	not near genes	chr3L	4907334	intergenic	not near genes	chr3L_4_4900001	chr3L_4900001	RAL-313
229	chr3L	5034158	5034191	chr3L	5043310	5043343	roo	4	9152	0.5	0.5	0.5	2.7	9185	chr3L	5034158	intron	Con -	chr3L	5038750	intron	Con -	chr3L	5043343	intron	Con -	chr3L_4_5035001	chr3L_5035001	RAL-313
234	chr3L	6335009	6335041	chr3L	6335480	6335512	297	5	471	1.0	0.5	0.8	2.8	503	chr3L	6335009	intron	CG13300 -	chr3L	6335260	intron	CG13300 -	chr3L	6335512	intron	CG13300 -	chr3L_5_6335001	chr3L_6335001	RAL-313
239	chr3L	7793728	7793739	chr3L	7800780	7800791	297	4	7052	1.0	0.5	0.8	2.2	7063	chr3L	7793728	intron	CG32369 -	chr3L	7797260	intron	CG32369 -	chr3L	7800791	intron	CG32369 -	chr3L_4_7795001	chr3L_7795001	RAL-313
241	chr3L	7916830	7916855	chr3L	7926000	7926026	roo	4	9171	0.5	0.0	0.2	3.3	9196	chr3L	7916830	3` UTR	syd -	chr3L	7921428	intron	syd -	chr3L	7926026	3` UTR	syd -	chr3L_4_7920001	chr3L_7920001	RAL-313
246	chr3L	9130568	9130579	chr3L	9134329	9134340	412	4	3761	1.5	0.0	0.8	2.2	3772	chr3L	9130568	intergenic	bol -	chr3L	9132454	intergenic	not near genes	chr3L	9134340	intergenic	Dhpr +	chr3L_4_9130001	chr3L_9130001	RAL-313
248	chr3L	9575907	9575933	chr3L	9580985	9581011	jockey	6	5078	1.5	0.0	0.8	3.3	5104	chr3L	9575907	intron	CG42673 +	chr3L	9578459	intron	CG42673 +	chr3L	9581011	intron	CG42673 +	chr3L_6_9575001	chr3L_9575001	RAL-313
250	chr3L	9929677	9929696	chr3L	9938457	9938476	roo	4	8780	4.0	0.5	2.2	1.2	8799	chr3L	9929677	intron	CG34356 +	chr3L	9934076	intron	CG34356 +	chr3L	9938476	intron	CG34356 +	chr3L_4_9930001	chr3L_9930001	RAL-313
261	chr3L	11723086	11723113	chr3L	11727881	11727908	Doc	7	4795	0.0	1.0	0.5	4.7	4822	chr3L	11723086	3` UTR	Bmcp +	chr3L	11725497	intron	Bmcp +	chr3L	11727908	3` UTR	Bmcp +	chr3L_7_11725001	chr3L_11725001	RAL-313
267	chr3L	12957786	12957816	chr3L	12962268	12962298	copia	5	4482	1.5	0.5	1.0	2.5	4512	chr3L	12957786	intergenic	not near genes	chr3L	12960042	intergenic	not near genes	chr3L	12962298	intergenic	not near genes	chr3L_5_12960001	chr3L_12960001	RAL-313
270	chr3L	13525176	13525185	chr3L	13532972	13532981	roo	4	7796	3.0	2.0	2.5	1.1	7805	chr3L	13525176	intergenic	not near genes	chr3L	13529078	intergenic	not near genes	chr3L	13532981	intergenic	not near genes	chr3L_4_13525001	chr3L_13525001	RAL-313
275	chr3L	14295985	14296010	chr3L	14296471	14296496	roo	4	486	1.0	1.0	1.0	2.0	511	chr3L	14295985	intron	fz +	chr3L	14296240	intron	fz +	chr3L	14296496	intron	fz +	chr3L_4_14295001	chr3L_14295001	RAL-313
279	chr3L	15899230	15899259	chr3L	15899797	15899826	jockey	4	567	0.5	1.0	0.8	2.2	596	chr3L	15899230	intergenic	pHCl -	chr3L	15899528	intergenic	pHCl -	chr3L	15899826	intergenic	sff -	chr3L_4_15895001	chr3L_15895001	RAL-313
281	chr3L	16493974	16494003	chr3L	16494491	16494520	jockey	6	517	1.5	0.5	1.0	3.0	546	chr3L	16493974	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494247	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494520	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L_6_16490001	chr3L_16490001	RAL-313
284	chr3L	16945726	16945742	chr3L	16954879	16954895	roo	6	9152	1.0	0.0	0.5	4.0	9169	chr3L	16945726	exon	Obp73a +	chr3L	16950310	intergenic	not near genes	chr3L	16954895	5` UTR	Nc73EF +	chr3L_6_16950001	chr3L_16950001	RAL-313
287	chr3L	17516990	17517002	chr3L	17524548	17524560	412	4	7558	1.5	1.5	1.5	1.6	7570	chr3L	17516990	intron	CG7564 +	chr3L	17520775	intron	CG7564 +	chr3L	17524560	3` UTR	CG7564 +	chr3L_4_17520001	chr3L_17520001	RAL-313
293	chr3L	19117042	19117073	chr3L	19124489	19124520	mdg1	9	7446	0.5	0.0	0.2	7.5	7478	chr3L	19117042	intron	CG14082 -	chr3L	19120781	intron	CG14082 -	chr3L	19124520	intron	CG14082 -	chr3L_9_19120001	chr3L_19120001	RAL-313
295	chr3L	20590071	20590085	chr3L	20590608	20590624	412	5	539	2.0	0.5	1.2	2.3	553	chr3L	20590071	intergenic	not near genes	chr3L	20590348	intergenic	not near genes	chr3L	20590624	intergenic	not near genes	chr3L_5_20590001	chr3L_20590001	RAL-313
296	chr3L	21361727	21361741	chr3L	21362681	21362693	G2	5	954	0.0	0.5	0.2	4.2	966	chr3L	21361727	intergenic	CG32440 +	chr3L	21362210	intergenic	not near genes	chr3L	21362693	intergenic	not near genes	chr3L_5_21360001	chr3L_21360001	RAL-313
297	chr3L	21498838	21498853	chr3L	21500473	21500488	1360	5	1636	1.0	2.0	1.5	2.0	1650	chr3L	21498838	intron	Glg1 -	chr3L	21499663	intron	Glg1 -	chr3L	21500488	intron	Glg1 -	chr3L_5_21495001	chr3L_21495001	RAL-313
304	chr3L	22865981	22866007	chr3L	22867113	22867140	Doc	8	1133	1.5	0.5	1.0	4.0	1159	chr3L	22865981	intron	CG33170 +	chr3L	22866560	intron	CG33170 +	chr3L	22867140	intron	CG33170 +	chr3L_8_22865001	chr3L_22865001	RAL-313
306	chr3L	23042223	23042253	chr3L	23048976	23049006	gypsy6	6	6753	1.5	1.5	1.5	2.4	6783	chr3L	23042223	intergenic	not near genes	chr3L	23045614	intergenic	not near genes	chr3L	23049006	intergenic	not near genes	chr3L_6_23045001	chr3L_23045001	RAL-313
309	chr3R	4609558	4609579	chr3R	4610722	4610743	1360	4	1164	1.5	1.5	1.5	1.6	1185	chr3R	4609558	intergenic	not near genes	chr3R	4610150	intergenic	not near genes	chr3R	4610743	intergenic	not near genes	chr3R_4_4610001	chr3R_4610001	RAL-313
310	chr3R	4683184	4683205	chr3R	4684943	4684964	S-element	5	1759	1.5	1.0	1.2	2.3	1780	chr3R	4683184	intron	CG43427 +	chr3R	4684074	intron	CG43427 +	chr3R	4684964	intron	CG43427 +	chr3R_5_4680001	chr3R_4680001	RAL-313
312	chr3R	5338394	5338432	chr3R	5343571	5343609	Rt1c	6	5177	0.0	0.5	0.2	5.0	5215	chr3R	5338394	intron	mtd -	chr3R	5341002	intron	mtd -	chr3R	5343609	intron	mtd -	chr3R_6_5340001	chr3R_5340001	RAL-313
314	chr3R	5445977	5445991	chr3R	5452437	5452451	Burdock	4	6460	1.5	1.0	1.2	1.8	6474	chr3R	5445977	intron	CG14669 +	chr3R	5449214	intron	CG14669 +	chr3R	5452451	intron	CG14669 +	chr3R_4_5445001	chr3R_5445001	RAL-313
315	chr3R	5747013	5747038	chr3R	5753204	5753229	diver	4	6190	1.0	0.0	0.5	2.7	6216	chr3R	5747013	intergenic	Madm +	chr3R	5750121	intergenic	not near genes	chr3R	5753229	intergenic	CG2091 -	chr3R_4_5750001	chr3R_5750001	RAL-313
317	chr3R	6015961	6015991	chr3R	6024442	6024471	Tirant	5	8481	0.0	1.0	0.5	3.3	8510	chr3R	6015961	intergenic	not near genes	chr3R	6020216	intergenic	not near genes	chr3R	6024471	intergenic	not near genes	chr3R_5_6020001	chr3R_6020001	RAL-313
325	chr3R	8207554	8207587	chr3R	8208399	8208432	F-element	7	845	0.0	0.5	0.2	5.8	878	chr3R	8207554	intergenic	not near genes	chr3R	8207993	intergenic	not near genes	chr3R	8208432	intergenic	not near genes	chr3R_7_8205001	chr3R_8205001	RAL-313
327	chr3R	8403007	8403030	chr3R	8412172	8412196	roo	4	9166	1.5	2.5	2.0	1.3	9189	chr3R	8403007	intron	CG45263 -	chr3R	8407602	intron	CG45263 -	chr3R	8412196	intron	CG45263 -	chr3R_4_8405001	chr3R_8405001	RAL-313
354	chr3R	17346692	17346715	chr3R	17348255	17348278	F-element	9	1563	0.5	2.0	1.2	4.1	1586	chr3R	17346692	intron	beat-IIa -	chr3R	17347485	intron	beat-IIa -	chr3R	17348278	intron	beat-IIa -	chr3R_9_17345001	chr3R_17345001	RAL-313
357	chr3R	17925866	17925889	chr3R	17927333	17927356	hobo	4	1467	1.0	1.5	1.2	1.8	1490	chr3R	17925866	intron	cpo +	chr3R	17926611	intron	cpo +	chr3R	17927356	intron	cpo +	chr3R_4_17925001	chr3R_17925001	RAL-313
368	chr3R	20331014	20331026	chr3R	20331500	20331512	roo	6	486	1.0	0.5	0.8	3.3	498	chr3R	20331014	intergenic	Sirt2 +	chr3R	20331263	intergenic	Sirt2 +	chr3R	20331512	intergenic	not near genes	chr3R_6_20330001	chr3R_20330001	RAL-313
369	chr3R	20506586	20506610	chr3R	20507389	20507413	BS	4	803	0.0	1.0	0.5	2.7	827	chr3R	20506586	intergenic	Or92a +	chr3R	20507000	intergenic	CG4288 -	chr3R	20507413	3` UTR	CG4288 -	chr3R_4_20505001	chr3R_20505001	RAL-313
372	chr3R	21761118	21761142	chr3R	21768510	21768534	mdg1	7	7392	0.5	1.0	0.8	3.9	7416	chr3R	21761118	exon	CG42335 +	chr3R	21764826	intron	CG42335 +	chr3R	21768534	exon	CG42335 +	chr3R_7_21760001	chr3R_21760001	RAL-313
377	chr3R	22450539	22450577	chr3R	22453179	22453217	NOF	4	2640	1.0	0.5	0.8	2.2	2678	chr3R	22450539	intron	CG34376 +	chr3R	22451878	intron	CG34376 +	chr3R	22453217	intron	CG34376 +	chr3R_4_22450001	chr3R_22450001	RAL-313
383	chr3R	24730109	24730109	chr3R	24732487	24732487	Doc	4	2378	2.5	0.0	1.2	1.8	2378	chr3R	24730109	intron	tok +	chr3R	24731298	intron	tok +	chr3R	24732487	intron	tok +	chr3R_4_24730001	chr3R_24730001	RAL-313
389	chr3R	25832689	25832720	chr3R	25841871	25841902	roo	7	9181	1.0	2.5	1.8	2.5	9213	chr3R	25832689	exon	alpha4GT2 +	chr3R	25837296	intron	alpha4GT2 +	chr3R	25841902	exon	alpha4GT2 +	chr3R_7_25835001	chr3R_25835001	RAL-313
400	chr3R	27342791	27342824	chr3R	27351372	27351405	Tirant	4	8580	0.5	0.5	0.5	2.7	8614	chr3R	27342791	intron	CG42534 +	chr3R	27347098	intron	CG42534 +	chr3R	27351405	intron	CG42534 +	chr3R_4_27345001	chr3R_27345001	RAL-313
406	chr3R	28302115	28302136	chr3R	28302548	28302575	jockey	5	438	1.0	2.5	1.8	1.8	460	chr3R	28302115	intergenic	not near genes	chr3R	28302345	intergenic	not near genes	chr3R	28302575	intergenic	not near genes	chr3R_5_28300001	chr3R_28300001	RAL-313
416	chr3R	29738263	29738280	chr3R	29739730	29739746	hobo	6	1467	1.5	0.5	1.0	3.0	1483	chr3R	29738263	intergenic	CG1969 +,CG7598 +	chr3R	29739004	intron	CG1969 +	chr3R	29739746	5` UTR	CG1969 +	chr3R_6_29735001	chr3R_29735001	RAL-313
425	chr3R	31413098	31413118	chr3R	31418298	31418318	copia	5	5200	1.5	0.0	0.8	2.8	5220	chr3R	31413098	intron	Gprk2 +	chr3R	31415708	intron	Gprk2 +	chr3R	31418318	intron	Gprk2 +	chr3R_5_31415001	chr3R_31415001	RAL-313
430	chr3R	31997990	31998025	chr3R	32005460	32005495	blood	6	7470	0.0	1.0	0.5	4.0	7505	chr3R	31997990	intron	heph -	chr3R	32001742	intron	heph -	chr3R	32005495	intron	heph -	chr3R_6_32000001	chr3R_32000001	RAL-313
431	chr4	76495	76513	chr4	81938	81956	I-element	4	5443	0.0	0.5	0.2	3.3	5461	chr4	76495	intron	pan +	chr4	79226	intron	pan +	chr4	81956	intron	pan +	chr4_4_75001	chr4_75001	RAL-313
432	chr4	671609	671615	chr4	680192	680198	Tirant	4	8583	2.5	0.0	1.2	1.8	8589	chr4	671609	intron	CG11360 +	chr4	675904	intron	CG11360 +	chr4	680198	intron	CG11360 +	chr4_4_675001	chr4_675001	RAL-313
434	chrX	827599	827620	chrX	835391	835412	roo	5	7791	0.5	0.0	0.2	4.2	7813	chrX	827599	intron	CG43867 -	chrX	831506	intron	CG43867 -	chrX	835412	intron	CG43867 -	chrX_5_830001	chrX_830001	RAL-313
435	chrX	906703	906734	chrX	908492	908523	S-element	6	1789	1.0	2.0	1.5	2.4	1820	chrX	906703	intron	CG43867 -	chrX	907613	intron	CG43867 -	chrX	908523	intron	CG43867 -	chrX_6_905001	chrX_905001	RAL-313
439	chrX	2844911	2844926	chrX	2852321	2852336	mdg1	5	7410	0.0	1.0	0.5	3.3	7425	chrX	2844911	intron	kirre +	chrX	2848624	intron	kirre +	chrX	2852336	intron	kirre +	chrX_5_2845001	chrX_2845001	RAL-313
445	chrX	6392873	6392894	chrX	6397638	6397659	Doc	7	4765	0.5	1.0	0.8	3.9	4786	chrX	6392873	intergenic	not near genes	chrX	6395266	intergenic	not near genes	chrX	6397659	intergenic	not near genes	chrX_7_6395001	chrX_6395001	RAL-313
450	chrX	8922336	8922359	chrX	8922768	8922793	jockey	6	434	0.5	1.5	1.0	3.0	457	chrX	8922336	intron	rdgA +	chrX	8922564	intron	rdgA +	chrX	8922793	intron	rdgA +	chrX_6_8920001	chrX_8920001	RAL-313
451	chrX	9508146	9508158	chrX	9509664	9509676	jockey	4	1518	1.0	1.5	1.2	1.8	1530	chrX	9508146	intron	CG32700 -	chrX	9508911	intron	CG32700 -	chrX	9509676	intron	CG32700 -	chrX_4_9505001	chrX_9505001	RAL-313
453	chrX	11633424	11633441	chrX	11640478	11640495	297	5	7054	1.0	0.5	0.8	2.8	7071	chrX	11633424	intron	Ptp10D +	chrX	11636960	intron	Ptp10D +	chrX	11640495	intron	Ptp10D +	chrX_5_11635001	chrX_11635001	RAL-313
458	chrX	14778028	14778040	chrX	14782824	14782837	Doc	4	4797	1.5	2.5	2.0	1.3	4809	chrX	14778028	intergenic	CG5347 +	chrX	14780432	intergenic	not near genes	chrX	14782837	intergenic	Ag5r2 -	chrX_4_14780001	chrX_14780001	RAL-313
459	chrX	16492646	16492653	chrX	16498223	16498229	mdg3	4	5576	1.5	1.0	1.2	1.8	5583	chrX	16492646	intron	para -	chrX	16495438	intron	para -	chrX	16498229	intron	para -	chrX_4_16495001	chrX_16495001	RAL-313
461	chrX	18194071	18194100	chrX	18194606	18194635	BS	5	535	1.5	1.0	1.2	2.3	564	chrX	18194071	intron	Frq2 +	chrX	18194353	intron	Frq2 +	chrX	18194635	intron	Frq2 +	chrX_5_18190001	chrX_18190001	RAL-313
463	chrX	19380165	19380174	chrX	19380406	19380415	pogo	5	241	2.0	1.0	1.5	2.0	250	chrX	19380165	intron	kek5 +	chrX	19380290	intron	kek5 +	chrX	19380415	intron	kek5 +	chrX_5_19380001	chrX_19380001	RAL-313
469	chrX	20504139	20504151	chrX	20505660	20505672	transib2	4	1521	0.5	1.0	0.8	2.2	1533	chrX	20504139	intron	RhoGAP19D -	chrX	20504906	intron	RhoGAP19D -	chrX	20505672	intron	RhoGAP19D -	chrX_4_20500001	chrX_20500001	RAL-313
470	chrX	20940722	20940746	chrX	20942191	20942215	hobo	5	1469	0.5	2.0	1.2	2.3	1493	chrX	20940722	intergenic	not near genes	chrX	20941468	intergenic	not near genes	chrX	20942215	intergenic	not near genes	chrX_5_20940001	chrX_20940001	RAL-313
471	chrX	21086131	21086141	chrX	21087160	21087170	jockey	4	1029	0.5	0.5	0.5	2.7	1039	chrX	21086131	intergenic	not near genes	chrX	21086650	intergenic	not near genes	chrX	21087170	intergenic	not near genes	chrX_4_21085001	chrX_21085001	RAL-313