SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 47464 47484 chr2L 52569 52589 jockey 8 5105 0.5 3.0 1.8 2.9 5125 chr2L 47464 intron Cda5 - chr2L 50026 intron Cda5 - chr2L 52589 intron Cda5 - chr2L_8_50001 chr2L_50001 RAL-313 2 chr2L 325903 325912 chr2L 325980 325989 4 77 1.0 1.5 1.2 1.8 86 chr2L 325903 intron,exon Plc21C +,CG43755 - chr2L 325946 intron,exon Plc21C +,CG43755 - chr2L 325989 intron,exon Plc21C +,CG43755 - chr2L_4_325001 chr2L_325001 RAL-313 3 chr2L 770470 770484 chr2L 772251 772265 Bari1 5 1780 0.0 0.5 0.2 4.2 1795 chr2L 770470 intergenic not near genes chr2L 771368 intergenic not near genes chr2L 772265 intergenic CR44614 + chr2L_5_770001 chr2L_770001 RAL-313 4 chr2L 848614 848638 chr2L 848698 848722 5 84 1.0 1.0 1.0 2.5 108 chr2L 848614 intron drongo - chr2L 848668 intron drongo - chr2L 848722 intron drongo - chr2L_5_845001 chr2L_845001 RAL-313 5 chr2L 1192682 1192690 chr2L 1192784 1192792 4 102 0.5 0.5 0.5 2.7 110 chr2L 1192682 intron CG5001 + chr2L 1192737 intron CG5001 + chr2L 1192792 intron CG5001 + chr2L_4_1190001 chr2L_1190001 RAL-313 6 chr2L 1539866 1539884 chr2L 1539959 1539977 6 93 0.0 2.0 1.0 3.0 111 chr2L 1539866 intergenic not near genes chr2L 1539922 intergenic not near genes chr2L 1539977 intergenic not near genes chr2L_6_1535001 chr2L_1535001 RAL-313 7 chr2L 1615392 1615403 chr2L 1615474 1615485 4 82 0.0 1.5 0.8 2.2 93 chr2L 1615392 intergenic not near genes chr2L 1615438 intergenic not near genes chr2L 1615485 intergenic not near genes chr2L_4_1615001 chr2L_1615001 RAL-313 8 chr2L 2068856 2068875 chr2L 2068943 2068960 4 86 0.0 1.0 0.5 2.7 104 chr2L 2068856 intron dpr3 - chr2L 2068908 intron dpr3 - chr2L 2068960 intron dpr3 - chr2L_4_2065001 chr2L_2065001 RAL-313 9 chr2L 2207674 2207694 chr2L 2207755 2207775 9 81 3.0 0.5 1.8 3.2 101 chr2L 2207674 exon CG33124 - chr2L 2207724 exon CG33124 - chr2L 2207775 exon CG33124 - chr2L_9_2205001 chr2L_2205001 RAL-313 10 chr2L 2552751 2552775 chr2L 2552831 2552855 4 80 1.5 0.0 0.8 2.2 104 chr2L 2552751 exon CG3515 - chr2L 2552803 5` UTR CG3515 - chr2L 2552855 intergenic CG3515 - chr2L_4_2550001 chr2L_2550001 RAL-313 11 chr2L 2637237 2637256 chr2L 2637335 2637354 7 98 1.5 3.0 2.2 2.2 117 chr2L 2637237 intergenic not near genes chr2L 2637296 intergenic not near genes chr2L 2637354 intergenic not near genes chr2L_7_2635001 chr2L_2635001 RAL-313 12 chr2L 3016133 3016160 chr2L 3016211 3016237 4 78 0.5 2.0 1.2 1.8 104 chr2L 3016133 intergenic CG17265 +,CG17224 - chr2L 3016185 intergenic CG17265 +,CG17224 - chr2L 3016237 intergenic CG17265 +,CG17224 - chr2L_4_3015001 chr2L_3015001 RAL-313 13 chr2L 3108886 3108895 chr2L 3108963 3108970 6 77 0.5 1.5 1.0 3.0 84 chr2L 3108886 intron toc - chr2L 3108928 intron toc - chr2L 3108970 intron toc - chr2L_6_3105001 chr2L_3105001 RAL-313 14 chr2L 3192219 3192240 chr2L 3192330 3192351 6 111 1.0 1.5 1.2 2.7 132 chr2L 3192219 intron CG34393 - chr2L 3192285 intron CG34393 - chr2L 3192351 intron CG34393 - chr2L_6_3190001 chr2L_3190001 RAL-313 15 chr2L 3348825 3348830 chr2L 3348924 3348928 4 98 0.5 0.0 0.2 3.3 103 chr2L 3348825 intron E23 - chr2L 3348876 intron E23 - chr2L 3348928 intron E23 - chr2L_4_3345001 chr2L_3345001 RAL-313 16 chr2L 3494428 3494448 chr2L 3494551 3494571 6 123 2.0 0.5 1.2 2.7 143 chr2L 3494428 3` UTR tim - chr2L 3494500 3` UTR tim - chr2L 3494571 3` UTR tim - chr2L_6_3490001 chr2L_3490001 RAL-313 17 chr2L 3582881 3582911 chr2L 3582958 3582988 6 77 0.0 0.0 0.0 6.0 107 chr2L 3582881 intergenic not near genes chr2L 3582934 intergenic not near genes chr2L 3582988 intergenic not near genes chr2L_6_3580001 chr2L_3580001 RAL-313 18 chr2L 3592071 3592095 chr2L 3592150 3592174 4 79 3.0 1.0 2.0 1.3 103 chr2L 3592071 intergenic not near genes chr2L 3592122 intergenic not near genes chr2L 3592174 intergenic not near genes chr2L_4_3590001 chr2L_3590001 RAL-313 19 chr2L 3663310 3663338 chr2L 3663389 3663417 4 79 1.5 1.5 1.5 1.6 107 chr2L 3663310 intron CG34340 + chr2L 3663364 intron CG34340 + chr2L 3663417 intron CG34340 + chr2L_4_3660001 chr2L_3660001 RAL-313 20 chr2L 3999200 3999210 chr2L 3999283 3999293 4 83 1.5 1.5 1.5 1.6 93 chr2L 3999200 intergenic not near genes chr2L 3999246 intergenic not near genes chr2L 3999293 intergenic not near genes chr2L_4_3995001 chr2L_3995001 RAL-313 21 chr2L 4166376 4166397 chr2L 4166459 4166480 4 83 1.5 0.0 0.8 2.2 104 chr2L 4166376 intergenic Or24a - chr2L 4166428 intergenic Or24a - chr2L 4166480 intergenic Or24a - chr2L_4_4165001 chr2L_4165001 RAL-313 22 chr2L 4819496 4819513 chr2L 4819619 4819636 5 123 2.0 0.5 1.2 2.3 140 chr2L 4819496 intergenic not near genes chr2L 4819566 intergenic not near genes chr2L 4819636 intergenic not near genes chr2L_5_4815001 chr2L_4815001 RAL-313 23 chr2L 4841070 4841098 chr2L 4841146 4841173 4 76 1.0 0.0 0.5 2.7 103 chr2L 4841070 intron CG12194 + chr2L 4841122 intron CG12194 + chr2L 4841173 exon CG12194 + chr2L_4_4840001 chr2L_4840001 RAL-313 24 chr2L 4998112 4998137 chr2L 4998225 4998249 4 113 2.0 0.0 1.0 2.0 137 chr2L 4998112 intron Rtnl1 - chr2L 4998180 intron Rtnl1 - chr2L 4998249 intron Rtnl1 - chr2L_4_4995001 chr2L_4995001 RAL-313 25 chr2L 5237904 5237941 chr2L 5237994 5238031 8 90 0.5 0.0 0.2 6.7 127 chr2L 5237904 intron tkv - chr2L 5237968 intron tkv - chr2L 5238031 intron tkv - chr2L_8_5235001 chr2L_5235001 RAL-313 26 chr2L 5345440 5345453 chr2L 5345516 5345529 4 76 0.5 0.5 0.5 2.7 89 chr2L 5345440 intergenic not near genes chr2L 5345484 intergenic not near genes chr2L 5345529 intergenic not near genes chr2L_4_5345001 chr2L_5345001 RAL-313 27 chr2L 5843847 5843870 chr2L 5843935 5843958 5 88 0.5 1.0 0.8 2.8 111 chr2L 5843847 intron TrissinR + chr2L 5843902 intron TrissinR + chr2L 5843958 intron TrissinR + chr2L_5_5840001 chr2L_5840001 RAL-313 28 chr2L 5989035 5989062 chr2L 5989111 5989138 7 76 1.0 0.0 0.5 4.7 103 chr2L 5989035 intergenic ifc +,lid - chr2L 5989086 intergenic ifc +,lid - chr2L 5989138 intergenic lid -,ifc + chr2L_7_5985001 chr2L_5985001 RAL-313 29 chr2L 6242861 6242885 chr2L 6242945 6242969 6 84 1.0 0.5 0.8 3.3 108 chr2L 6242861 intergenic not near genes chr2L 6242915 intergenic not near genes chr2L 6242969 intergenic not near genes chr2L_6_6240001 chr2L_6240001 RAL-313 30 chr2L 6426858 6426884 chr2L 6445118 6445143 roo 5 18260 0.0 1.5 0.8 2.8 18285 chr2L 6426858 3` UTR CG9527 - chr2L 6436000 intron CG9527 - chr2L 6445143 exon CG9527 - chr2L_5_6435001 chr2L_6435001 RAL-313 31 chr2L 6583372 6583391 chr2L 6583600 6583619 5 228 0.5 1.5 1.0 2.5 247 chr2L 6583372 intron CG11319 - chr2L 6583496 intron CG11319 - chr2L 6583619 intron CG11319 - chr2L_5_6580001 chr2L_6580001 RAL-313 32 chr2L 7201006 7201035 chr2L 7201087 7201116 4 81 0.5 1.5 1.0 2.0 110 chr2L 7201006 intron CG4502 - chr2L 7201061 intron CG4502 - chr2L 7201116 intron CG4502 - chr2L_4_7200001 chr2L_7200001 RAL-313 33 chr2L 7570970 7570986 chr2L 7571051 7571067 6 81 0.5 1.5 1.0 3.0 97 chr2L 7570970 intron RapGAP1 - chr2L 7571018 intron RapGAP1 - chr2L 7571067 intron RapGAP1 - chr2L_6_7570001 chr2L_7570001 RAL-313 34 chr2L 7579901 7579920 chr2L 7579983 7580002 7 82 1.0 0.0 0.5 4.7 101 chr2L 7579901 intergenic not near genes chr2L 7579952 intergenic not near genes chr2L 7580002 intergenic not near genes chr2L_7_7575001 chr2L_7575001 RAL-313 35 chr2L 8128032 8128061 chr2L 8128113 8128144 9 83 0.0 1.0 0.5 6.0 112 chr2L 8128032 intron CG8668 + chr2L 8128088 intron CG8668 + chr2L 8128144 intron CG8668 + chr2L_9_8125001 chr2L_8125001 RAL-313 36 chr2L 8271624 8271651 chr2L 8271700 8271727 4 76 0.0 1.0 0.5 2.7 103 chr2L 8271624 intron Btk29A - chr2L 8271676 intron Btk29A - chr2L 8271727 intron Btk29A - chr2L_4_8270001 chr2L_8270001 RAL-313 37 chr2L 8452419 8452440 chr2L 8461590 8461611 roo 5 9171 0.0 1.5 0.8 2.8 9192 chr2L 8452419 intron fu12 - chr2L 8457015 intron fu12 - chr2L 8461611 intron fu12 - chr2L_5_8455001 chr2L_8455001 RAL-313 38 chr2L 8723119 8723145 chr2L 8731496 8731522 Tirant 5 8377 0.0 1.0 0.5 3.3 8403 chr2L 8723119 intron raw - chr2L 8727320 intron raw - chr2L 8731522 intron raw - chr2L_5_8725001 chr2L_8725001 RAL-313 39 chr2L 9114109 9114119 chr2L 9114188 9114198 7 79 1.5 1.0 1.2 3.2 89 chr2L 9114109 intergenic not near genes chr2L 9114154 intergenic not near genes chr2L 9114198 intergenic not near genes chr2L_7_9110001 chr2L_9110001 RAL-313 40 chr2L 9303361 9303481 chr2L 9303464 9303558 4 84 0.0 0.0 0.0 4.0 197 chr2L 9303361 intergenic not near genes chr2L 9303460 intergenic not near genes chr2L 9303558 intergenic not near genes chr2L_4_9300001 chr2L_9300001 RAL-313 41 chr2L 9387264 9387274 chr2L 9387362 9387372 4 98 1.0 0.0 0.5 2.7 108 chr2L 9387264 intron Shawl - chr2L 9387318 intron Shawl - chr2L 9387372 intron Shawl - chr2L_4_9385001 chr2L_9385001 RAL-313 42 chr2L 9393512 9393528 chr2L 9396479 9396495 jockey 5 2967 0.5 1.5 1.0 2.5 2983 chr2L 9393512 intron Shawl - chr2L 9395004 intron Shawl - chr2L 9396495 intron Shawl - chr2L_5_9395001 chr2L_9395001 RAL-313 43 chr2L 9982204 9982231 chr2L 9982307 9982334 4 103 0.0 1.0 0.5 2.7 130 chr2L 9982204 intergenic not near genes chr2L 9982269 intergenic not near genes chr2L 9982334 intergenic not near genes chr2L_4_9980001 chr2L_9980001 RAL-313 44 chr2L 10023074 10023082 chr2L 10023159 10023167 4 85 1.5 1.0 1.2 1.8 93 chr2L 10023074 intergenic not near genes chr2L 10023120 intergenic not near genes chr2L 10023167 intergenic not near genes chr2L_4_10020001 chr2L_10020001 RAL-313 45 chr2L 10156320 10156352 chr2L 10163790 10163820 blood 8 7470 2.0 0.0 1.0 4.0 7500 chr2L 10156320 intron,3` UTR CG44153 -,CG4839 + chr2L 10160070 intron CG44153 - chr2L 10163820 intron CG44153 - chr2L_8_10160001 chr2L_10160001 RAL-313 46 chr2L 10176712 10176744 chr2L 10176959 10176991 6 247 8.0 12.0 10.0 0.5 279 chr2L 10176712 intron CG44153 - chr2L 10176852 intron CG44153 - chr2L 10176991 intron CG44153 - chr2L_6_10175001 chr2L_10175001 RAL-313 47 chr2L 10640645 10640657 chr2L 10640734 10640746 9 89 3.0 2.0 2.5 2.6 101 chr2L 10640645 exon CG31872 + chr2L 10640696 exon CG31872 + chr2L 10640746 exon CG31872 + chr2L_9_10640001 chr2L_10640001 RAL-313 48 chr2L 10805258 10805265 chr2L 10805339 10805347 5 82 0.5 0.5 0.5 3.3 89 chr2L 10805258 intron Nos - chr2L 10805302 intron Nos - chr2L 10805347 intron Nos - chr2L_5_10805001 chr2L_10805001 RAL-313 49 chr2L 11028443 11028465 chr2L 11028546 11028569 4 104 0.0 0.0 0.0 4.0 126 chr2L 11028443 intron Samuel - chr2L 11028506 intron Samuel - chr2L 11028569 intron Samuel - chr2L_4_11025001 chr2L_11025001 RAL-313 50 chr2L 11174647 11174655 chr2L 11174724 11174732 4 77 0.0 1.5 0.8 2.2 85 chr2L 11174647 intron Ca-beta - chr2L 11174690 intron Ca-beta - chr2L 11174732 intron Ca-beta - chr2L_4_11170001 chr2L_11170001 RAL-313 51 chr2L 11563637 11563663 chr2L 11568840 11568866 copia 5 5204 1.0 0.0 0.5 3.3 5229 chr2L 11563637 intergenic not near genes chr2L 11566252 intergenic not near genes chr2L 11568866 intergenic not near genes chr2L_5_11565001 chr2L_11565001 RAL-313 52 chr2L 12131476 12131497 chr2L 12131572 12131593 5 96 1.0 2.5 1.8 1.8 117 chr2L 12131476 intron rho-6 - chr2L 12131534 intron rho-6 - chr2L 12131593 intron rho-6 - chr2L_5_12130001 chr2L_12130001 RAL-313 53 chr2L 12229578 12229609 chr2L 12229655 12229686 4 77 1.0 0.0 0.5 2.7 108 chr2L 12229578 intron aret + chr2L 12229632 intron aret + chr2L 12229686 intron aret + chr2L_4_12225001 chr2L_12225001 RAL-313 54 chr2L 12266535 12266554 chr2L 12266617 12266637 4 83 1.0 1.0 1.0 2.0 102 chr2L 12266535 intron aret + chr2L 12266586 intron aret + chr2L 12266637 intron aret + chr2L_4_12265001 chr2L_12265001 RAL-313 55 chr2L 12337283 12337314 chr2L 12337371 12337402 4 88 1.0 0.0 0.5 2.7 119 chr2L 12337283 intergenic not near genes chr2L 12337342 intergenic not near genes chr2L 12337402 intergenic not near genes chr2L_4_12335001 chr2L_12335001 RAL-313 56 chr2L 12487899 12487917 chr2L 12487989 12488007 5 90 0.0 2.0 1.0 2.5 108 chr2L 12487899 intron bun - chr2L 12487953 intron bun - chr2L 12488007 intron bun - chr2L_5_12485001 chr2L_12485001 RAL-313 57 chr2L 12739190 12739205 chr2L 12743971 12743986 Doc 4 4781 0.0 3.0 1.5 1.6 4796 chr2L 12739190 intron MRP + chr2L 12741588 intron MRP + chr2L 12743986 exon MRP + chr2L_4_12740001 chr2L_12740001 RAL-313 58 chr2L 12861695 12861721 chr2L 12863162 12863182 hobo 5 1466 0.5 0.5 0.5 3.3 1487 chr2L 12861695 intergenic not near genes chr2L 12862438 intergenic not near genes chr2L 12863182 intergenic not near genes chr2L_5_12860001 chr2L_12860001 RAL-313 59 chr2L 13063402 13063411 chr2L 13063479 13063488 4 76 1.0 1.5 1.2 1.8 86 chr2L 13063402 intergenic not near genes chr2L 13063445 intergenic not near genes chr2L 13063488 intergenic not near genes chr2L_4_13060001 chr2L_13060001 RAL-313 60 chr2L 13147745 13147773 chr2L 13147821 13147849 5 76 1.0 2.5 1.8 1.8 104 chr2L 13147745 intergenic not near genes chr2L 13147797 intergenic not near genes chr2L 13147849 intergenic not near genes chr2L_5_13145001 chr2L_13145001 RAL-313 61 chr2L 13405648 13405674 chr2L 13410445 13410470 Doc 9 4797 1.5 2.0 1.8 3.2 4822 chr2L 13405648 exon CG7110 + chr2L 13408059 intron CG7110 + chr2L 13410470 intron CG7110 + chr2L_9_13405001 chr2L_13405001 RAL-313 62 chr2L 13481448 13481470 chr2L 13482055 13482077 jockey 4 607 0.5 0.5 0.5 2.7 629 chr2L 13481448 intron CG42784 + chr2L 13481762 intron CG42784 + chr2L 13482077 intron CG42784 + chr2L_4_13480001 chr2L_13480001 RAL-313 63 chr2L 13622215 13622232 chr2L 13622319 13622336 4 104 0.0 1.5 0.8 2.2 121 chr2L 13622215 intron kuz + chr2L 13622276 intron kuz + chr2L 13622336 intron kuz + chr2L_4_13620001 chr2L_13620001 RAL-313 64 chr2L 13853095 13853111 chr2L 13862245 13862261 roo 5 9150 1.5 0.5 1.0 2.5 9166 chr2L 13853095 intron CenG1A + chr2L 13857678 intron CenG1A + chr2L 13862261 intron CenG1A + chr2L_5_13855001 chr2L_13855001 RAL-313 65 chr2L 14774232 14774260 chr2L 14774449 14774477 6 217 0.5 4.0 2.2 1.9 245 chr2L 14774232 3` UTR CG4650 - chr2L 14774354 3` UTR CG4650 - chr2L 14774477 3` UTR CG4650 - chr2L_6_14770001 chr2L_14770001 RAL-313 66 chr2L 14803881 14803906 chr2L 14809084 14809108 copia 5 5203 2.0 0.0 1.0 2.5 5227 chr2L 14803881 intergenic not near genes chr2L 14806494 intergenic not near genes chr2L 14809108 intergenic not near genes chr2L_5_14805001 chr2L_14805001 RAL-313 67 chr2L 14889957 14889988 chr2L 14890382 14890413 jockey 5 425 1.0 1.0 1.0 2.5 456 chr2L 14889957 intergenic not near genes chr2L 14890185 intergenic not near genes chr2L 14890413 intergenic not near genes chr2L_5_14890001 chr2L_14890001 RAL-313 68 chr2L 14923122 14923134 chr2L 14923202 14923214 4 80 2.5 0.5 1.5 1.6 92 chr2L 14923122 intron CG42313 - chr2L 14923168 intron CG42313 - chr2L 14923214 intron CG42313 - chr2L_4_14920001 chr2L_14920001 RAL-313 69 chr2L 15021441 15021459 chr2L 15021517 15021535 4 76 3.0 0.0 1.5 1.6 94 chr2L 15021441 intron GABA-B-R1 + chr2L 15021488 intron GABA-B-R1 + chr2L 15021535 intron GABA-B-R1 + chr2L_4_15020001 chr2L_15020001 RAL-313 70 chr2L 15044555 15044584 chr2L 15044784 15044813 8 229 0.0 0.5 0.2 6.7 258 chr2L 15044555 intergenic ck - chr2L 15044684 intergenic ck - chr2L 15044813 intergenic ck - chr2L_8_15040001 chr2L_15040001 RAL-313 71 chr2L 15127767 15127796 chr2L 15127853 15127882 6 86 2.0 0.0 1.0 3.0 115 chr2L 15127767 intergenic not near genes chr2L 15127824 intergenic not near genes chr2L 15127882 intergenic not near genes chr2L_6_15125001 chr2L_15125001 RAL-313 72 chr2L 15483291 15483314 chr2L 15483377 15483400 4 86 1.5 0.0 0.8 2.2 109 chr2L 15483291 intergenic not near genes chr2L 15483346 intergenic not near genes chr2L 15483400 intergenic not near genes chr2L_4_15480001 chr2L_15480001 RAL-313 73 chr2L 14672881 14672885 chr2L 16071771 16071771 5 1398888 1.0 4.0 2.5 1.4 1398890 chr2L 14672881 intron osp - chr2L 15372326 intergenic not near genes chr2L 16071771 intron beat-Ia + chr2L_5_15370001 chr2L_15370001 RAL-313 74 chr2L 16254904 16254919 chr2L 16255163 16255178 4 259 0.5 1.0 0.8 2.2 274 chr2L 16254904 intron PRL-1 - chr2L 16255041 intron PRL-1 - chr2L 16255178 intron PRL-1 - chr2L_4_16255001 chr2L_16255001 RAL-313 75 chr2L 16280252 16280288 chr2L 16281420 16281456 1360 4 1168 0.0 0.0 0.0 4.0 1204 chr2L 16280252 intron crp - chr2L 16280854 intron crp - chr2L 16281456 intron crp - chr2L_4_16280001 chr2L_16280001 RAL-313 76 chr2L 16358134 16358165 chr2L 16358214 16358245 6 80 0.5 0.5 0.5 4.0 111 chr2L 16358134 intergenic not near genes chr2L 16358190 intergenic not near genes chr2L 16358245 intergenic not near genes chr2L_6_16355001 chr2L_16355001 RAL-313 77 chr2L 16384498 16384518 chr2L 16384587 16384607 5 89 2.0 3.0 2.5 1.4 109 chr2L 16384498 intergenic not near genes chr2L 16384552 intergenic not near genes chr2L 16384607 intergenic not near genes chr2L_5_16380001 chr2L_16380001 RAL-313 78 chr2L 16616583 16616615 chr2L 16616667 16616697 5 83 1.0 1.0 1.0 2.5 114 chr2L 16616583 intron CG42389 + chr2L 16616640 intron CG42389 + chr2L 16616697 intron CG42389 + chr2L_5_16615001 chr2L_16615001 RAL-313 79 chr2L 16818833 16818860 chr2L 16818909 16818936 5 76 0.0 0.0 0.0 5.0 103 chr2L 16818833 intron,intron CG13280 -,mdy + chr2L 16818884 intron,intron CG13280 -,mdy + chr2L 16818936 intron,intron CG13280 -,mdy + chr2L_5_16815001 chr2L_16815001 RAL-313 80 chr2L 16949631 16949646 chr2L 16949715 16949730 6 84 0.5 3.0 1.8 2.1 99 chr2L 16949631 intron CR44393 - chr2L 16949680 intron CR44393 - chr2L 16949730 intron CR44393 - chr2L_6_16945001 chr2L_16945001 RAL-313 81 chr2L 17158729 17158752 chr2L 17158832 17158855 4 103 0.5 1.5 1.0 2.0 126 chr2L 17158729 5` UTR,exon CG34106 +,beat-IIIa + chr2L 17158792 intron,intron CG34106 +,beat-IIIa + chr2L 17158855 intron,intron CG34106 +,beat-IIIa + chr2L_4_17155001 chr2L_17155001 RAL-313 82 chr2L 17424720 17424736 chr2L 17424832 17424848 6 112 1.0 2.0 1.5 2.4 128 chr2L 17424720 intron Dif - chr2L 17424784 intron Dif - chr2L 17424848 intron Dif - chr2L_6_17420001 chr2L_17420001 RAL-313 83 chr2L 17723790 17723800 chr2L 17723883 17723893 4 93 0.0 0.0 0.0 4.0 103 chr2L 17723790 intron CadN - chr2L 17723842 intron CadN - chr2L 17723893 intron CadN - chr2L_4_17720001 chr2L_17720001 RAL-313 84 chr2L 17941857 17941874 chr2L 17941941 17941957 4 84 0.0 0.5 0.2 3.3 100 chr2L 17941857 intergenic not near genes chr2L 17941907 intergenic not near genes chr2L 17941957 intergenic not near genes chr2L_4_17940001 chr2L_17940001 RAL-313 85 chr2L 17951946 17951960 chr2L 17953413 17953427 hobo 6 1467 0.0 1.5 0.8 3.3 1481 chr2L 17951946 intergenic CR44398 -,CR44397 - chr2L 17952686 intergenic not near genes chr2L 17953427 intergenic not near genes chr2L_6_17950001 chr2L_17950001 RAL-313 86 chr2L 18051878 18051898 chr2L 18061025 18061045 roo 6 9146 0.5 2.0 1.2 2.7 9167 chr2L 18051878 intron rdo + chr2L 18056462 intron rdo + chr2L 18061045 intron rdo + chr2L_6_18055001 chr2L_18055001 RAL-313 87 chr2L 18079829 18079847 chr2L 18079915 18079933 4 86 1.0 1.5 1.2 1.8 104 chr2L 18079829 intron Arr1 + chr2L 18079881 intron Arr1 + chr2L 18079933 intron Arr1 + chr2L_4_18075001 chr2L_18075001 RAL-313 88 chr2L 18624397 18624428 chr2L 18624594 18624625 8 194 0.0 1.5 0.8 4.4 228 chr2L 18624397 intron MESR3 + chr2L 18624511 intron MESR3 + chr2L 18624625 intron MESR3 + chr2L_8_18620001 chr2L_18620001 RAL-313 89 chr2L 18816840 18816860 chr2L 18817045 18817065 4 206 9.5 8.5 9.0 0.4 225 chr2L 18816840 intergenic not near genes chr2L 18816952 intergenic not near genes chr2L 18817065 intergenic not near genes chr2L_4_18815001 chr2L_18815001 RAL-313 90 chr2L 18883855 18883885 chr2L 18883937 18883967 9 82 2.0 1.0 1.5 3.6 112 chr2L 18883855 intergenic not near genes chr2L 18883911 intergenic not near genes chr2L 18883967 intergenic not near genes chr2L_9_18880001 chr2L_18880001 RAL-313 91 chr2L 19189971 19190005 chr2L 19190125 19190158 5 154 1.0 3.5 2.2 1.6 187 chr2L 19189971 intergenic pigeon +,drl + chr2L 19190064 intergenic pigeon +,drl + chr2L 19190158 intergenic drl +,pigeon + chr2L_5_19190001 chr2L_19190001 RAL-313 92 chr2L 19345038 19345050 chr2L 19357247 19357259 blood 4 12209 0.5 1.0 0.8 2.2 12221 chr2L 19345038 intron dnt - chr2L 19351148 intron dnt - chr2L 19357259 intron dnt - chr2L_4_19350001 chr2L_19350001 RAL-313 93 chr2L 19357548 19357569 chr2L 19357638 19357659 6 90 2.0 1.5 1.8 2.1 111 chr2L 19357548 intron dnt - chr2L 19357604 intron dnt - chr2L 19357659 intron dnt - chr2L_6_19355001 chr2L_19355001 RAL-313 94 chr2L 19375485 19375493 chr2L 19375566 19375574 4 81 0.0 1.5 0.8 2.2 89 chr2L 19375485 intergenic not near genes chr2L 19375530 intergenic not near genes chr2L 19375574 intergenic not near genes chr2L_4_19375001 chr2L_19375001 RAL-313 95 chr2L 19544591 19544622 chr2L 19544668 19544699 6 77 1.5 0.0 0.8 3.3 108 chr2L 19544591 exon ref(2)P + chr2L 19544645 exon ref(2)P + chr2L 19544699 exon ref(2)P + chr2L_6_19540001 chr2L_19540001 RAL-313 96 chr2L 19568040 19568062 chr2L 19568130 19568152 5 90 0.0 0.5 0.2 4.2 112 chr2L 19568040 3` UTR spi - chr2L 19568096 3` UTR spi - chr2L 19568152 3` UTR spi - chr2L_5_19565001 chr2L_19565001 RAL-313 97 chr2L 19597275 19597305 chr2L 19597508 19597538 8 233 1.0 2.0 1.5 3.2 263 chr2L 19597275 intron Lar + chr2L 19597406 intron Lar + chr2L 19597538 intron Lar + chr2L_8_19595001 chr2L_19595001 RAL-313 98 chr2L 19737361 19737383 chr2L 19740824 19740852 1360 5 3467 2.0 1.5 1.8 1.8 3491 chr2L 19737361 intergenic Nf-YB + chr2L 19739106 intergenic not near genes chr2L 19740852 intergenic not near genes chr2L_5_19735001 chr2L_19735001 RAL-313 99 chr2L 19871551 19871573 chr2L 19871637 19871660 8 86 0.5 1.5 1.0 4.0 109 chr2L 19871551 intron sick + chr2L 19871606 intron sick + chr2L 19871660 intron sick + chr2L_8_19870001 chr2L_19870001 RAL-313 100 chr2L 20036534 20036548 chr2L 20036618 20036632 4 84 0.5 0.5 0.5 2.7 98 chr2L 20036534 intron sNPF + chr2L 20036583 intron sNPF + chr2L 20036632 intron sNPF + chr2L_4_20035001 chr2L_20035001 RAL-313 101 chr2L 20041430 20041460 chr2L 20041515 20041545 7 85 0.0 3.0 1.5 2.8 115 chr2L 20041430 intron sNPF + chr2L 20041488 intron sNPF + chr2L 20041545 intron sNPF + chr2L_7_20040001 chr2L_20040001 RAL-313 102 chr2L 20046554 20046578 chr2L 20046643 20046667 5 88 0.5 0.0 0.2 4.2 113 chr2L 20046554 intron sNPF + chr2L 20046610 intron sNPF + chr2L 20046667 intron sNPF + chr2L_5_20045001 chr2L_20045001 RAL-313 103 chr2L 20127479 20127518 chr2L 20127706 20127745 5 227 1.0 1.0 1.0 2.5 266 chr2L 20127479 intergenic not near genes chr2L 20127612 intergenic not near genes chr2L 20127745 intergenic not near genes chr2L_5_20125001 chr2L_20125001 RAL-313 104 chr2L 20272120 20272143 chr2L 20282831 20282854 copia 11 10711 0.5 2.0 1.2 5.0 10734 chr2L 20272120 intergenic not near genes chr2L 20277487 intergenic not near genes chr2L 20282854 intergenic not near genes chr2L_11_20275001 chr2L_20275001 RAL-313 105 chr2L 20486994 20487019 chr2L 20487077 20487102 4 83 0.5 0.5 0.5 2.7 108 chr2L 20486994 5` UTR CR45361 + chr2L 20487048 5` UTR CR45361 + chr2L 20487102 5` UTR CR45361 + chr2L_4_20485001 chr2L_20485001 RAL-313 106 chr2L 20576224 20576252 chr2L 20583692 20583720 blood 4 7468 0.5 2.5 1.5 1.6 7496 chr2L 20576224 intergenic not near genes chr2L 20579972 intergenic not near genes chr2L 20583720 3` UTR CR44909 - chr2L_4_20575001 chr2L_20575001 RAL-313 107 chr2L 20611244 20611249 chr2L 20611333 20611337 4 88 0.0 0.0 0.0 4.0 93 chr2L 20611244 intron CR44909 - chr2L 20611290 intron CR44909 - chr2L 20611337 intron CR44909 - chr2L_4_20610001 chr2L_20610001 RAL-313 108 chr2L 20684275 20684297 chr2L 20684355 20684377 4 80 0.5 2.0 1.2 1.8 102 chr2L 20684275 3` UTR Hr38 - chr2L 20684326 3` UTR Hr38 - chr2L 20684377 3` UTR Hr38 - chr2L_4_20680001 chr2L_20680001 RAL-313 109 chr2L 20840026 20840045 chr2L 20840238 20840255 4 211 0.0 0.0 0.0 4.0 229 chr2L 20840026 intergenic not near genes chr2L 20840140 intergenic not near genes chr2L 20840255 intergenic CG31676 + chr2L_4_20840001 chr2L_20840001 RAL-313 110 chr2L 20976649 20976673 chr2L 20981464 20981488 X-element 4 4815 0.0 1.0 0.5 2.7 4839 chr2L 20976649 intron CG42238 - chr2L 20979068 intron CG42238 - chr2L 20981488 intron CG42238 - chr2L_4_20975001 chr2L_20975001 RAL-313 111 chr2L 21597034 21597050 chr2L 21604777 21604794 roo 4 7744 0.5 0.5 0.5 2.7 7760 chr2L 21597034 intergenic not near genes chr2L 21600914 intergenic not near genes chr2L 21604794 intergenic not near genes chr2L_4_21600001 chr2L_21600001 RAL-313 112 chr2L 21855477 21855513 chr2L 21855563 21855600 4 86 0.5 0.5 0.5 2.7 123 chr2L 21855477 intron CR44917 + chr2L 21855538 intron CR44917 + chr2L 21855600 intron CR44917 + chr2L_4_21855001 chr2L_21855001 RAL-313 113 chr2L 22548930 22548930 chr2L 22550154 22550155 1360 4 1225 0.0 1.0 0.5 2.7 1225 chr2L 22548930 intergenic CG17490 + chr2L 22549542 intergenic not near genes chr2L 22550155 intergenic CG17493 + chr2L_4_22545001 chr2L_22545001 RAL-313 114 chr2L 22631231 22631248 chr2L 22631321 22631337 4 90 11.5 8.5 10.0 0.4 106 chr2L 22631231 intron CG40006 - chr2L 22631284 intron CG40006 - chr2L 22631337 intron CG40006 - chr2L_4_22630001 chr2L_22630001 RAL-313 115 chr2L 22674073 22674092 chr2L 22674150 22674169 4 77 2.0 0.5 1.2 1.8 96 chr2L 22674073 intron CG40006 - chr2L 22674121 intron CG40006 - chr2L 22674169 intron CG40006 - chr2L_4_22670001 chr2L_22670001 RAL-313 116 chr2L 22679800 22679830 chr2L 22684572 22684602 F-element 6 4771 1.0 5.5 3.2 1.4 4802 chr2L 22679800 intron CG40006 - chr2L 22682201 intron CG40006 - chr2L 22684602 intron CG40006 - chr2L_6_22680001 chr2L_22680001 RAL-313 117 chr2R 552758 552785 chr2R 553976 554003 1360 4 1218 3.0 0.5 1.8 1.4 1245 chr2R 552758 intron CG40378 + chr2R 553380 intron CG40378 + chr2R 554003 intron CG40378 + chr2R_4_550001 chr2R_550001 RAL-313 118 chr2R 4622963 4622985 chr2R 4624122 4624144 1360 4 1158 0.5 2.0 1.2 1.8 1181 chr2R 4622963 intergenic CR44101 - chr2R 4623554 intergenic not near genes chr2R 4624144 intergenic not near genes chr2R_4_4620001 chr2R_4620001 RAL-313 119 chr2R 4957014 4957046 chr2R 4957117 4957149 7 103 0.5 0.0 0.2 5.8 135 chr2R 4957014 intron Ir41a + chr2R 4957082 intron Ir41a + chr2R 4957149 intron Ir41a + chr2R_7_4955001 chr2R_4955001 RAL-313 120 chr2R 5417994 5418027 chr2R 5420626 5420658 Burdock 6 2632 0.0 1.0 0.5 4.0 2664 chr2R 5417994 intron laccase2 + chr2R 5419326 intron laccase2 + chr2R 5420658 intron laccase2 + chr2R_6_5415001 chr2R_5415001 RAL-313 121 chr2R 5846736 5846749 chr2R 5846864 5846877 6 128 1.0 3.0 2.0 2.0 141 chr2R 5846736 5` UTR dpr12 + chr2R 5846806 5` UTR dpr12 + chr2R 5846877 5` UTR dpr12 + chr2R_6_5845001 chr2R_5845001 RAL-313 122 chr2R 5869277 5869299 chr2R 5874353 5874375 flea 8 5076 0.0 2.0 1.0 4.0 5098 chr2R 5869277 intergenic not near genes chr2R 5871826 intergenic not near genes chr2R 5874375 intergenic not near genes chr2R_8_5870001 chr2R_5870001 RAL-313 123 chr2R 6177958 6177982 chr2R 6178136 6178160 4 178 2.5 0.5 1.5 1.6 202 chr2R 6177958 intergenic not near genes chr2R 6178059 intergenic not near genes chr2R 6178160 intergenic not near genes chr2R_4_6175001 chr2R_6175001 RAL-313 124 chr2R 7139949 7139956 chr2R 7141441 7141448 hopper2 4 1492 1.0 3.0 2.0 1.3 1499 chr2R 7139949 intergenic not near genes chr2R 7140698 intergenic not near genes chr2R 7141448 intergenic not near genes chr2R_4_7140001 chr2R_7140001 RAL-313 125 chr2R 7202992 7203012 chr2R 7203069 7203089 5 77 1.0 2.0 1.5 2.0 97 chr2R 7202992 intron pk + chr2R 7203040 intron pk + chr2R 7203089 intron pk + chr2R_5_7200001 chr2R_7200001 RAL-313 126 chr2R 7290189 7290202 chr2R 7290291 7290304 5 102 1.5 0.0 0.8 2.8 115 chr2R 7290189 intron pwn + chr2R 7290246 intron pwn + chr2R 7290304 intron pwn + chr2R_5_7290001 chr2R_7290001 RAL-313 127 chr2R 7417918 7418163 chr2R 7418004 7418242 4 81 2.5 1.5 2.0 1.3 324 chr2R 7417918 intergenic not near genes chr2R 7418080 intergenic not near genes chr2R 7418242 intergenic not near genes chr2R_4_7415001 chr2R_7415001 RAL-313 128 chr2R 7869187 7869198 chr2R 7873973 7873984 Doc 5 4786 0.5 1.0 0.8 2.8 4797 chr2R 7869187 intron Dgk - chr2R 7871586 intron Dgk - chr2R 7873984 intron Dgk - chr2R_5_7870001 chr2R_7870001 RAL-313 129 chr2R 8014129 8014148 chr2R 8014205 8014224 4 76 0.0 0.0 0.0 4.0 95 chr2R 8014129 intergenic CG14762 - chr2R 8014176 intergenic CG14762 - chr2R 8014224 intergenic CG14762 - chr2R_4_8010001 chr2R_8010001 RAL-313 130 chr2R 8638345 8638377 chr2R 8638423 8638454 4 78 0.5 0.0 0.2 3.3 109 chr2R 8638345 intergenic not near genes chr2R 8638400 intergenic not near genes chr2R 8638454 intergenic not near genes chr2R_4_8635001 chr2R_8635001 RAL-313 131 chr2R 9605838 9605859 chr2R 9605945 9605966 5 107 0.5 0.0 0.2 4.2 128 chr2R 9605838 3` UTR CR44285 - chr2R 9605902 intergenic CR44285 -,GstT1 +,CG1902 + chr2R 9605966 intergenic GstT1 +,CR44285 -,CG1902 + chr2R_5_9605001 chr2R_9605001 RAL-313 132 chr2R 9669136 9669160 chr2R 9669237 9669260 7 101 0.0 0.5 0.2 5.8 124 chr2R 9669136 intron Mmp2 - chr2R 9669198 intron Mmp2 - chr2R 9669260 intron Mmp2 - chr2R_7_9665001 chr2R_9665001 RAL-313 133 chr2R 9782445 9782470 chr2R 9782534 9782559 4 89 0.0 0.5 0.2 3.3 114 chr2R 9782445 intron CG1688 - chr2R 9782502 intron CG1688 - chr2R 9782559 intron CG1688 - chr2R_4_9780001 chr2R_9780001 RAL-313 134 chr2R 9871044 9871073 chr2R 9871530 9871559 roo 5 486 0.0 0.0 0.0 5.0 515 chr2R 9871044 intron cbx - chr2R 9871302 intron cbx - chr2R 9871559 intron,5` UTR cbx -,CG18446 + chr2R_5_9870001 chr2R_9870001 RAL-313 135 chr2R 9928425 9928446 chr2R 9928550 9928571 4 125 2.0 0.0 1.0 2.0 146 chr2R 9928425 intron Mef2 - chr2R 9928498 intron Mef2 - chr2R 9928571 intron Mef2 - chr2R_4_9925001 chr2R_9925001 RAL-313 136 chr2R 9945435 9945474 chr2R 9945631 9945669 BS 5 196 0.5 0.0 0.2 4.2 234 chr2R 9945435 intron Mef2 - chr2R 9945552 intron Mef2 - chr2R 9945669 intron Mef2 - chr2R_5_9945001 chr2R_9945001 RAL-313 137 chr2R 10005874 10005878 chr2R 10007038 10007043 1360 4 1164 1.0 3.0 2.0 1.3 1169 chr2R 10005874 intron Pka-R2 - chr2R 10006458 intron Pka-R2 - chr2R 10007043 intron Pka-R2 - chr2R_4_10005001 chr2R_10005001 RAL-313 138 chr2R 10169539 10169555 chr2R 10169619 10169635 4 80 2.0 0.5 1.2 1.8 96 chr2R 10169539 intron KCNQ - chr2R 10169587 intron KCNQ - chr2R 10169635 intron KCNQ - chr2R_4_10165001 chr2R_10165001 RAL-313 139 chr2R 10492329 10492346 chr2R 10492418 10492435 6 89 1.0 1.5 1.2 2.7 106 chr2R 10492329 intron lola - chr2R 10492382 intron lola - chr2R 10492435 intron lola - chr2R_6_10490001 chr2R_10490001 RAL-313 140 chr2R 10658070 10658087 chr2R 10658162 10658179 9 92 0.5 3.0 1.8 3.2 109 chr2R 10658070 intergenic not near genes chr2R 10658124 intergenic not near genes chr2R 10658179 intergenic not near genes chr2R_9_10655001 chr2R_10655001 RAL-313 141 chr2R 10893644 10893649 chr2R 10893722 10893727 4 78 2.5 1.5 2.0 1.3 83 chr2R 10893644 exon cag - chr2R 10893686 exon cag - chr2R 10893727 exon cag - chr2R_4_10890001 chr2R_10890001 RAL-313 142 chr2R 11133404 11133415 chr2R 11133628 11133639 4 224 0.5 0.0 0.2 3.3 235 chr2R 11133404 intergenic not near genes chr2R 11133522 intergenic not near genes chr2R 11133639 intergenic not near genes chr2R_4_11130001 chr2R_11130001 RAL-313 143 chr2R 11297621 11297648 chr2R 11301942 11301968 flea 6 4320 0.5 0.0 0.2 5.0 4347 chr2R 11297621 intergenic CG42336 - chr2R 11299794 intergenic not near genes chr2R 11301968 5` UTR CG7741 + chr2R_6_11295001 chr2R_11295001 RAL-313 144 chr2R 11415522 11415548 chr2R 11418670 11418696 opus 6 3149 1.0 0.5 0.8 3.3 3174 chr2R 11415522 intron Drip - chr2R 11417109 intron Drip - chr2R 11418696 intron Drip - chr2R_6_11415001 chr2R_11415001 RAL-313 145 chr2R 11472652 11472678 chr2R 11473845 11473875 pogo 9 1196 2.0 3.0 2.5 2.6 1223 chr2R 11472652 intergenic not near genes chr2R 11473264 intergenic not near genes chr2R 11473875 intergenic not near genes chr2R_9_11470001 chr2R_11470001 RAL-313 146 chr2R 11814418 11814451 chr2R 11814670 11814703 4 252 0.5 0.5 0.5 2.7 285 chr2R 11814418 3` UTR ths + chr2R 11814560 intergenic ths + chr2R 11814703 intergenic ths + chr2R_4_11810001 chr2R_11810001 RAL-313 147 chr2R 12145911 12145946 chr2R 12148604 12148639 4 2693 12.5 10.0 11.2 0.3 2728 chr2R 12145911 exon Hen1 + chr2R 12147275 intron,intron Hen1 +,CG8878 - chr2R 12148639 intron,exon Hen1 +,CG8878 - chr2R_4_12145001 chr2R_12145001 RAL-313 148 chr2R 12186005 12186022 chr2R 12186099 12186117 5 95 0.5 0.0 0.2 4.2 112 chr2R 12186005 intron Cyp6g1 + chr2R 12186061 intron Cyp6g1 + chr2R 12186117 intron Cyp6g1 + chr2R_5_12185001 chr2R_12185001 RAL-313 149 chr2R 12187474 12187497 chr2R 12190090 12190113 11 2616 17.5 10.5 14.0 0.7 2639 chr2R 12187474 exon Cyp6g1 + chr2R 12188794 exon Cyp6g2 - chr2R 12190113 exon Cyp6g2 - chr2R_11_12185001 chr2R_12185001 RAL-313 150 chr2R 12501693 12501714 chr2R 12503854 12503876 Rt1c 5 2162 2.0 0.0 1.0 2.5 2183 chr2R 12501693 intron fdl - chr2R 12502784 intron fdl - chr2R 12503876 intron fdl - chr2R_5_12500001 chr2R_12500001 RAL-313 151 chr2R 12700817 12700838 chr2R 12700908 12700931 6 93 1.0 1.0 1.0 3.0 114 chr2R 12700817 3` UTR wuc + chr2R 12700874 intergenic wuc + chr2R 12700931 intergenic wuc + chr2R_6_12700001 chr2R_12700001 RAL-313 152 chr2R 12789292 12789328 chr2R 12797655 12797691 roo 7 8363 1.0 1.5 1.2 3.2 8399 chr2R 12789292 intron,3` UTR sca +,CR45137 - chr2R 12793492 intron,intron sca +,CR45137 - chr2R 12797691 intron,3` UTR sca +,CR45137 - chr2R_7_12790001 chr2R_12790001 RAL-313 153 chr2R 13103579 13103612 chr2R 13103810 13103843 8 231 1.0 1.5 1.2 3.6 264 chr2R 13103579 intergenic CG44341 + chr2R 13103711 intergenic CG44341 + chr2R 13103843 intergenic CG44341 + chr2R_8_13100001 chr2R_13100001 RAL-313 154 chr2R 13136848 13136863 chr2R 13141646 13141661 Doc 4 4798 1.0 2.5 1.8 1.4 4813 chr2R 13136848 exon Cap-G + chr2R 13139254 intron Cap-G + chr2R 13141661 intron Cap-G + chr2R_4_13135001 chr2R_13135001 RAL-313 155 chr2R 13305500 13305509 chr2R 13305582 13305590 5 82 1.5 2.0 1.8 1.8 90 chr2R 13305500 intergenic not near genes chr2R 13305545 intergenic not near genes chr2R 13305590 intergenic not near genes chr2R_5_13305001 chr2R_13305001 RAL-313 156 chr2R 13432934 13432969 chr2R 13433010 13433045 5 76 0.0 0.0 0.0 5.0 111 chr2R 13432934 intron CG42321 - chr2R 13432990 intron CG42321 - chr2R 13433045 intron,5` UTR CG42321 -,CG30065 + chr2R_5_13430001 chr2R_13430001 RAL-313 157 chr2R 13574417 13574426 chr2R 13574497 13574507 6 81 1.0 2.0 1.5 2.4 90 chr2R 13574417 intergenic CG42808 -,CR44365 + chr2R 13574462 intergenic CG42808 -,CR44365 + chr2R 13574507 intergenic CG42808 -,CR44365 + chr2R_6_13570001 chr2R_13570001 RAL-313 158 chr2R 14266760 14266793 chr2R 14266836 14266868 4 75 1.0 1.0 1.0 2.0 108 chr2R 14266760 intron CG8547 - chr2R 14266814 intron CG8547 - chr2R 14266868 intron CG8547 - chr2R_4_14265001 chr2R_14265001 RAL-313 159 chr2R 14352689 14352716 chr2R 14352783 14352810 6 94 3.0 0.0 1.5 2.4 121 chr2R 14352689 exon CG8613 + chr2R 14352750 intron CG8613 + chr2R 14352810 intron CG8613 + chr2R_6_14350001 chr2R_14350001 RAL-313 160 chr2R 14373499 14373523 chr2R 14373586 14373610 4 87 1.0 4.0 2.5 1.1 111 chr2R 14373499 exon Obp50d + chr2R 14373554 exon Obp50d + chr2R 14373610 exon Obp50d + chr2R_4_14370001 chr2R_14370001 RAL-313 161 chr2R 14467305 14467323 chr2R 14476463 14476481 roo 4 9158 1.5 1.5 1.5 1.6 9176 chr2R 14467305 intergenic not near genes chr2R 14471893 intergenic not near genes chr2R 14476481 5` UTR CR44462 + chr2R_4_14470001 chr2R_14470001 RAL-313 162 chr2R 14796872 14796884 chr2R 14796959 14796971 7 87 0.0 2.0 1.0 3.5 99 chr2R 14796872 intron kn - chr2R 14796922 intron kn - chr2R 14796971 intron kn - chr2R_7_14795001 chr2R_14795001 RAL-313 163 chr2R 14889207 14889234 chr2R 14897815 14897842 Max-element 7 8608 1.0 0.0 0.5 4.7 8635 chr2R 14889207 intergenic Cyp6a8 - chr2R 14893524 intergenic not near genes chr2R 14897842 intergenic not near genes chr2R_7_14890001 chr2R_14890001 RAL-313 164 chr2R 14968452 14968471 chr2R 14968534 14968552 4 82 1.0 1.0 1.0 2.0 100 chr2R 14968452 intron ckn + chr2R 14968502 intron ckn + chr2R 14968552 intron ckn + chr2R_4_14965001 chr2R_14965001 RAL-313 165 chr2R 14987389 14987399 chr2R 14987533 14987541 7 144 1.0 0.5 0.8 3.9 152 chr2R 14987389 intron pcs + chr2R 14987465 intron pcs + chr2R 14987541 intron pcs + chr2R_7_14985001 chr2R_14985001 RAL-313 166 chr2R 15084978 15084999 chr2R 15092027 15092047 297 6 7049 2.0 0.5 1.2 2.7 7069 chr2R 15084978 intergenic not near genes chr2R 15088512 intergenic not near genes chr2R 15092047 5` UTR CR44457 + chr2R_6_15085001 chr2R_15085001 RAL-313 167 chr2R 15119333 15119340 chr2R 15127814 15127821 Tirant 8 8481 0.0 2.5 1.2 3.6 8488 chr2R 15119333 intron chn + chr2R 15123577 intron chn + chr2R 15127821 intron chn + chr2R_8_15120001 chr2R_15120001 RAL-313 168 chr2R 15395864 15395884 chr2R 15395969 15395989 6 105 1.5 1.0 1.2 2.7 125 chr2R 15395864 intergenic not near genes chr2R 15395926 intergenic not near genes chr2R 15395989 intergenic not near genes chr2R_6_15395001 chr2R_15395001 RAL-313 169 chr2R 16603281 16603315 chr2R 16603357 16603392 8 77 0.5 1.0 0.8 4.4 111 chr2R 16603281 intron CG8303 - chr2R 16603336 intron CG8303 - chr2R 16603392 intron CG8303 - chr2R_8_16600001 chr2R_16600001 RAL-313 170 chr2R 16659559 16659585 chr2R 16659650 16659676 4 91 0.5 0.5 0.5 2.7 117 chr2R 16659559 intron Picot - chr2R 16659618 intron Picot - chr2R 16659676 intron Picot - chr2R_4_16655001 chr2R_16655001 RAL-313 171 chr2R 17236512 17236538 chr2R 17241716 17241742 copia 4 5204 0.5 2.0 1.2 1.8 5230 chr2R 17236512 intron mbl + chr2R 17239127 intron mbl + chr2R 17241742 intron mbl + chr2R_4_17235001 chr2R_17235001 RAL-313 172 chr2R 17640114 17640134 chr2R 17640348 17640368 4 234 3.5 1.5 2.5 1.1 254 chr2R 17640114 intergenic not near genes chr2R 17640241 intergenic not near genes chr2R 17640368 intergenic not near genes chr2R_4_17640001 chr2R_17640001 RAL-313 173 chr2R 17784029 17784057 chr2R 17784270 17784298 pogo 5 241 0.0 2.5 1.2 2.3 269 chr2R 17784029 intergenic mir-31a - chr2R 17784164 intergenic mir-31a - chr2R 17784298 intergenic mir-31a - chr2R_5_17780001 chr2R_17780001 RAL-313 174 chr2R 18314404 18314424 chr2R 18314482 18314502 4 78 2.0 1.0 1.5 1.6 98 chr2R 18314404 intron sbb - chr2R 18314453 intron sbb - chr2R 18314502 intron sbb - chr2R_4_18310001 chr2R_18310001 RAL-313 175 chr2R 18477748 18477755 chr2R 18477831 18477838 4 83 0.0 2.0 1.0 2.0 90 chr2R 18477748 intron CG30116 - chr2R 18477793 intron CG30116 - chr2R 18477838 intron CG30116 - chr2R_4_18475001 chr2R_18475001 RAL-313 176 chr2R 18604418 18604456 chr2R 18604504 18604541 6 86 0.0 2.0 1.0 3.0 123 chr2R 18604418 intron GEFmeso - chr2R 18604480 intron GEFmeso - chr2R 18604541 intron GEFmeso - chr2R_6_18600001 chr2R_18600001 RAL-313 177 chr2R 19015432 19015463 chr2R 19015520 19015550 7 88 0.5 0.0 0.2 5.8 118 chr2R 19015432 intergenic not near genes chr2R 19015491 intergenic not near genes chr2R 19015550 intergenic not near genes chr2R_7_19015001 chr2R_19015001 RAL-313 178 chr2R 19536465 19536491 chr2R 19536547 19536572 4 82 0.5 2.0 1.2 1.8 107 chr2R 19536465 intron sm - chr2R 19536518 intron sm - chr2R 19536572 intron sm - chr2R_4_19535001 chr2R_19535001 RAL-313 179 chr2R 19925183 19925205 chr2R 19926300 19926322 6 1117 1.5 2.0 1.8 2.1 1139 chr2R 19925183 intergenic CR44626 - chr2R 19925752 3` UTR CR44626 - chr2R 19926322 intergenic CR44626 - chr2R_6_19925001 chr2R_19925001 RAL-313 180 chr2R 19992137 19992154 chr2R 19992215 19992230 4 78 0.0 1.5 0.8 2.2 93 chr2R 19992137 intergenic not near genes chr2R 19992184 intergenic not near genes chr2R 19992230 intergenic not near genes chr2R_4_19990001 chr2R_19990001 RAL-313 181 chr2R 20088009 20088025 chr2R 20088117 20088133 1360 5 108 0.0 0.5 0.2 4.2 124 chr2R 20088009 intergenic not near genes chr2R 20088071 intergenic not near genes chr2R 20088133 intergenic not near genes chr2R_5_20085001 chr2R_20085001 RAL-313 182 chr2R 20431246 20431249 chr2R 20431332 20431332 4 85 2.0 1.0 1.5 1.6 86 chr2R 20431246 intron CG12484 + chr2R 20431289 intron CG12484 + chr2R 20431332 intron CG12484 + chr2R_4_20430001 chr2R_20430001 RAL-313 183 chr2R 21753082 21753114 chr2R 21753567 21753599 roo 5 485 1.0 0.5 0.8 2.8 517 chr2R 21753082 intergenic not near genes chr2R 21753340 intergenic not near genes chr2R 21753599 intergenic not near genes chr2R_5_21750001 chr2R_21750001 RAL-313 184 chr2R 21809531 21809555 chr2R 21817771 21817795 roo 7 8240 0.0 0.5 0.2 5.8 8264 chr2R 21809531 intergenic not near genes chr2R 21813663 intergenic not near genes chr2R 21817795 intergenic not near genes chr2R_7_21810001 chr2R_21810001 RAL-313 185 chr2R 21857345 21857367 chr2R 21857436 21857458 5 91 0.5 2.0 1.2 2.3 113 chr2R 21857345 intergenic not near genes chr2R 21857402 intergenic not near genes chr2R 21857458 intergenic not near genes chr2R_5_21855001 chr2R_21855001 RAL-313 186 chr2R 21906272 21906302 chr2R 21906372 21906403 5 101 0.5 0.5 0.5 3.3 131 chr2R 21906272 intron Fili + chr2R 21906338 intron Fili + chr2R 21906403 intron Fili + chr2R_5_21905001 chr2R_21905001 RAL-313 187 chr2R 22002332 22002341 chr2R 22002412 22002424 5 82 0.0 1.0 0.5 3.3 92 chr2R 22002332 intron CG34370 - chr2R 22002378 intron CG34370 - chr2R 22002424 intron CG34370 - chr2R_5_22000001 chr2R_22000001 RAL-313 188 chr2R 22072682 22072713 chr2R 22072767 22072798 11 85 0.5 0.0 0.2 9.2 116 chr2R 22072682 intron CG11474 - chr2R 22072740 intron CG11474 - chr2R 22072798 exon CG11474 - chr2R_11_22070001 chr2R_22070001 RAL-313 189 chr2R 22095643 22095663 chr2R 22095752 22095772 5 109 1.5 1.5 1.5 2.0 129 chr2R 22095643 intron CG11073 - chr2R 22095708 intron CG11073 - chr2R 22095772 intron CG11073 - chr2R_5_22095001 chr2R_22095001 RAL-313 190 chr2R 22499850 22499859 chr2R 22499926 22499935 4 76 0.0 0.5 0.2 3.3 85 chr2R 22499850 intron px - chr2R 22499892 intron px - chr2R 22499935 intron px - chr2R_4_22495001 chr2R_22495001 RAL-313 191 chr2R 22540945 22540964 chr2R 22541024 22541043 5 79 0.0 0.0 0.0 5.0 98 chr2R 22540945 exon px - chr2R 22540994 intron px - chr2R 22541043 intron px - chr2R_5_22540001 chr2R_22540001 RAL-313 192 chr2R 22774963 22774987 chr2R 22775382 22775405 jockey 4 419 3.0 1.0 2.0 1.3 442 chr2R 22774963 intron CG42260 - chr2R 22775184 intron CG42260 - chr2R 22775405 intron CG42260 - chr2R_4_22775001 chr2R_22775001 RAL-313 193 chr2R 22846915 22846938 chr2R 22846992 22847015 4 77 0.0 0.0 0.0 4.0 100 chr2R 22846915 exon CG3649 + chr2R 22846965 exon CG3649 + chr2R 22847015 exon CG3649 + chr2R_4_22845001 chr2R_22845001 RAL-313 194 chr2R 22968139 22968162 chr2R 22968228 22968251 5 89 0.5 0.0 0.2 4.2 112 chr2R 22968139 intergenic not near genes chr2R 22968195 intergenic not near genes chr2R 22968251 intergenic not near genes chr2R_5_22965001 chr2R_22965001 RAL-313 195 chr2R 23180402 23180418 chr2R 23180662 23180678 4 260 1.0 1.0 1.0 2.0 276 chr2R 23180402 intron CG34371 - chr2R 23180540 intron CG34371 - chr2R 23180678 intron CG34371 - chr2R_4_23180001 chr2R_23180001 RAL-313 196 chr2R 23394335 23394360 chr2R 23394417 23394442 5 82 0.0 1.0 0.5 3.3 107 chr2R 23394335 intron CG3530 - chr2R 23394388 intron CG3530 - chr2R 23394442 intron CG3530 - chr2R_5_23390001 chr2R_23390001 RAL-313 197 chr2R 23521403 23521426 chr2R 23521499 23521522 5 96 1.0 0.0 0.5 3.3 119 chr2R 23521403 intron RabX1 - chr2R 23521462 intron RabX1 - chr2R 23521522 intron RabX1 - chr2R_5_23520001 chr2R_23520001 RAL-313 198 chr2R 23607036 23607061 chr2R 23607117 23607142 5 81 0.5 1.5 1.0 2.5 106 chr2R 23607036 intron CG17664 - chr2R 23607089 intron CG17664 - chr2R 23607142 intron CG17664 - chr2R_5_23605001 chr2R_23605001 RAL-313 199 chr2R 23986512 23986544 chr2R 23986592 23986624 5 79 0.0 1.0 0.5 3.3 112 chr2R 23986512 intron Phm - chr2R 23986568 intron Phm - chr2R 23986624 intron,5` UTR Phm -,CG30178 + chr2R_5_23985001 chr2R_23985001 RAL-313 200 chr2R 24031391 24031405 chr2R 24031474 24031489 5 84 0.5 1.0 0.8 2.8 98 chr2R 24031391 5` UTR CG30172 - chr2R 24031440 intergenic CG30172 -,Chi - chr2R 24031489 intergenic Chi -,CG30172 - chr2R_5_24030001 chr2R_24030001 RAL-313 201 chr2R 24210399 24210415 chr2R 24210570 24210582 4 170 1.0 0.5 0.8 2.2 183 chr2R 24210399 intergenic not near genes chr2R 24210490 intergenic not near genes chr2R 24210582 intergenic not near genes chr2R_4_24210001 chr2R_24210001 RAL-313 202 chr2R 24449920 24449943 chr2R 24450004 24450027 5 84 2.0 0.5 1.2 2.3 107 chr2R 24449920 intergenic not near genes chr2R 24449974 intergenic not near genes chr2R 24450027 intergenic not near genes chr2R_5_24445001 chr2R_24445001 RAL-313 203 chr2R 24509725 24509751 chr2R 24509810 24509836 5 85 5.5 1.0 3.2 1.2 111 chr2R 24509725 3` UTR Letm1 - chr2R 24509780 3` UTR Letm1 - chr2R 24509836 3` UTR Letm1 - chr2R_5_24505001 chr2R_24505001 RAL-313 204 chr2R 24707844 24707856 chr2R 24707923 24707935 5 79 2.0 1.5 1.8 1.8 91 chr2R 24707844 intron Mid1 - chr2R 24707890 intron Mid1 - chr2R 24707935 intron Mid1 - chr2R_5_24705001 chr2R_24705001 RAL-313 205 chr2R 24727889 24727893 chr2R 24735397 24735401 mdg1 5 7508 3.0 1.5 2.2 1.6 7512 chr2R 24727889 intron Mid1 - chr2R 24731645 intron Mid1 - chr2R 24735401 intron Mid1 - chr2R_5_24730001 chr2R_24730001 RAL-313 206 chr3L 651386 651416 chr3L 651474 651504 5 88 0.0 1.5 0.8 2.8 118 chr3L 651386 intergenic Gale +,CG3402 - chr3L 651445 intergenic CG3402 -,Gale + chr3L 651504 intergenic CG3402 -,Gale + chr3L_5_650001 chr3L_650001 RAL-313 207 chr3L 746499 746526 chr3L 746584 746611 4 85 1.0 0.5 0.8 2.2 112 chr3L 746499 intron hng3 - chr3L 746555 intron hng3 - chr3L 746611 intron hng3 - chr3L_4_745001 chr3L_745001 RAL-313 208 chr3L 789913 789942 chr3L 790398 790427 roo 6 485 0.5 1.0 0.8 3.3 514 chr3L 789913 intergenic not near genes chr3L 790170 intergenic not near genes chr3L 790427 intergenic not near genes chr3L_6_790001 chr3L_790001 RAL-313 209 chr3L 858002 858011 chr3L 866483 866492 Tirant 4 8481 3.5 1.0 2.2 1.2 8490 chr3L 858002 intergenic not near genes chr3L 862247 intergenic not near genes chr3L 866492 intergenic CG12502 + chr3L_4_860001 chr3L_860001 RAL-313 210 chr3L 925177 925210 chr3L 932603 932636 mdg1 4 7426 0.5 0.5 0.5 2.7 7459 chr3L 925177 intron Glut1 + chr3L 928906 intron Glut1 + chr3L 932636 intron Glut1 + chr3L_4_925001 chr3L_925001 RAL-313 211 chr3L 1219606 1219623 chr3L 1227339 1227355 412 5 7733 1.0 0.5 0.8 2.8 7749 chr3L 1219606 intron mwh + chr3L 1223480 intron mwh + chr3L 1227355 intron mwh + chr3L_5_1220001 chr3L_1220001 RAL-313 212 chr3L 1361292 1361322 chr3L 1361366 1361398 5 75 1.0 0.5 0.8 2.8 106 chr3L 1361292 intron Ptp61F - chr3L 1361345 intron Ptp61F - chr3L 1361398 intron Ptp61F - chr3L_5_1360001 chr3L_1360001 RAL-313 213 chr3L 1430017 1430033 chr3L 1430095 1430111 4 78 0.0 2.0 1.0 2.0 94 chr3L 1430017 intron Ptp61F - chr3L 1430064 intron Ptp61F - chr3L 1430111 intron Ptp61F - chr3L_4_1430001 chr3L_1430001 RAL-313 214 chr3L 1848646 1848669 chr3L 1848723 1848747 6 78 0.5 1.0 0.8 3.3 101 chr3L 1848646 intergenic not near genes chr3L 1848696 intergenic not near genes chr3L 1848747 intergenic not near genes chr3L_6_1845001 chr3L_1845001 RAL-313 215 chr3L 2168780 2168799 chr3L 2168871 2168889 6 91 0.5 0.5 0.5 4.0 109 chr3L 2168780 exon CG15879 - chr3L 2168834 intron CG15879 - chr3L 2168889 intron CG15879 - chr3L_6_2165001 chr3L_2165001 RAL-313 216 chr3L 2680518 2680544 chr3L 2680598 2680624 4 80 0.5 0.0 0.2 3.3 106 chr3L 2680518 intron Fife - chr3L 2680571 intron Fife - chr3L 2680624 intron Fife - chr3L_4_2680001 chr3L_2680001 RAL-313 217 chr3L 2808205 2808221 chr3L 2811954 2811970 4 3749 5.5 6.0 5.8 0.6 3765 chr3L 2808205 intron CG43444 - chr3L 2810088 intron CG43444 - chr3L 2811970 intron CG43444 - chr3L_4_2810001 chr3L_2810001 RAL-313 218 chr3L 2898840 2898863 chr3L 2898935 2898957 9 95 2.0 1.5 1.8 3.2 117 chr3L 2898840 intron Shab + chr3L 2898898 intron Shab + chr3L 2898957 intron Shab + chr3L_9_2895001 chr3L_2895001 RAL-313 219 chr3L 3128195 3128214 chr3L 3128281 3128300 5 86 2.0 0.5 1.2 2.3 105 chr3L 3128195 intergenic prominin-like - chr3L 3128248 intergenic not near genes chr3L 3128300 intergenic not near genes chr3L_5_3125001 chr3L_3125001 RAL-313 220 chr3L 3475084 3475104 chr3L 3475528 3475548 jockey 7 444 0.0 3.0 1.5 2.8 464 chr3L 3475084 intron CG42324 + chr3L 3475316 intron CG42324 + chr3L 3475548 intron CG42324 + chr3L_7_3475001 chr3L_3475001 RAL-313 221 chr3L 3601297 3601328 chr3L 3606608 3606639 copia 6 5311 1.5 0.5 1.0 3.0 5342 chr3L 3601297 intron Eip63E + chr3L 3603968 intron Eip63E + chr3L 3606639 intron Eip63E + chr3L_6_3600001 chr3L_3600001 RAL-313 222 chr3L 4299759 4299767 chr3L 4300137 4300145 5 378 0.5 0.5 0.5 3.3 386 chr3L 4299759 intron dyl - chr3L 4299952 intron dyl - chr3L 4300145 intron dyl - chr3L_5_4295001 chr3L_4295001 RAL-313 223 chr3L 4436275 4436290 chr3L 4436482 4436497 4 207 4.5 2.0 3.2 1.0 222 chr3L 4436275 intergenic nAChRbeta1 +,CG15021 + chr3L 4436386 intergenic CG15021 +,nAChRbeta1 + chr3L 4436497 intergenic CG15021 + chr3L_4_4435001 chr3L_4435001 RAL-313 224 chr3L 4440942 4440960 chr3L 4441030 4441048 8 88 0.5 1.0 0.8 4.4 106 chr3L 4440942 intergenic not near genes chr3L 4440995 intergenic not near genes chr3L 4441048 intergenic not near genes chr3L_8_4440001 chr3L_4440001 RAL-313 225 chr3L 4441833 4441854 chr3L 4441912 4441933 7 79 1.0 1.0 1.0 3.5 100 chr3L 4441833 intergenic not near genes chr3L 4441883 intergenic not near genes chr3L 4441933 intergenic not near genes chr3L_7_4440001 chr3L_4440001 RAL-313 226 chr3L 4456770 4456795 chr3L 4456860 4456885 11 90 0.5 1.0 0.8 6.1 115 chr3L 4456770 intergenic CG11345 - chr3L 4456828 intergenic CG11345 - chr3L 4456885 intergenic CG11345 - chr3L_11_4455001 chr3L_4455001 RAL-313 227 chr3L 4597819 4597829 chr3L 4597922 4597932 4 103 0.5 0.5 0.5 2.7 113 chr3L 4597819 intron Src64B - chr3L 4597876 intron Src64B - chr3L 4597932 intron Src64B - chr3L_4_4595001 chr3L_4595001 RAL-313 228 chr3L 4901130 4901144 chr3L 4907320 4907334 diver 4 6190 0.5 1.0 0.8 2.2 6204 chr3L 4901130 intergenic CG13704 + chr3L 4904232 intergenic not near genes chr3L 4907334 intergenic not near genes chr3L_4_4900001 chr3L_4900001 RAL-313 229 chr3L 5034158 5034191 chr3L 5043310 5043343 roo 4 9152 0.5 0.5 0.5 2.7 9185 chr3L 5034158 intron Con - chr3L 5038750 intron Con - chr3L 5043343 intron Con - chr3L_4_5035001 chr3L_5035001 RAL-313 230 chr3L 5381831 5381848 chr3L 5381911 5381928 4 80 2.0 1.5 1.8 1.4 97 chr3L 5381831 exon Ir64a - chr3L 5381880 exon Ir64a - chr3L 5381928 exon Ir64a - chr3L_4_5380001 chr3L_5380001 RAL-313 231 chr3L 5434223 5434246 chr3L 5434305 5434329 5 83 2.5 0.0 1.2 2.3 106 chr3L 5434223 intron CG34391 + chr3L 5434276 intron CG34391 + chr3L 5434329 intron CG34391 + chr3L_5_5430001 chr3L_5430001 RAL-313 232 chr3L 5482952 5483089 chr3L 5483161 5483208 6 164 0.0 0.0 0.0 6.0 256 chr3L 5482952 exon CG4835 + chr3L 5483080 exon CG4835 + chr3L 5483208 exon CG4835 + chr3L_6_5480001 chr3L_5480001 RAL-313 233 chr3L 5655421 5655440 chr3L 5655526 5655545 5 105 1.0 1.0 1.0 2.5 124 chr3L 5655421 intron lin-28 + chr3L 5655483 intron lin-28 + chr3L 5655545 intron lin-28 + chr3L_5_5655001 chr3L_5655001 RAL-313 234 chr3L 6335009 6335041 chr3L 6335480 6335512 297 5 471 1.0 0.5 0.8 2.8 503 chr3L 6335009 intron CG13300 - chr3L 6335260 intron CG13300 - chr3L 6335512 intron CG13300 - chr3L_5_6335001 chr3L_6335001 RAL-313 235 chr3L 6353382 6353409 chr3L 6353462 6353489 5 80 1.0 1.0 1.0 2.5 107 chr3L 6353382 intergenic not near genes chr3L 6353436 intergenic not near genes chr3L 6353489 intergenic not near genes chr3L_5_6350001 chr3L_6350001 RAL-313 236 chr3L 6604290 6604296 chr3L 6604367 6604373 6 77 0.0 3.5 1.8 2.1 83 chr3L 6604290 intron CG8368 + chr3L 6604332 intron CG8368 + chr3L 6604373 intron,3` UTR CG8368 +,zpg - chr3L_6_6600001 chr3L_6600001 RAL-313 237 chr3L 6761498 6761523 chr3L 6761634 6761659 5 136 0.5 1.0 0.8 2.8 161 chr3L 6761498 intron CG32392 - chr3L 6761578 intron CG32392 - chr3L 6761659 intron CG32392 - chr3L_5_6760001 chr3L_6760001 RAL-313 238 chr3L 7309023 7309039 chr3L 7309415 7309431 4 392 0.0 1.0 0.5 2.7 408 chr3L 7309023 intron unc-13-4A - chr3L 7309227 intron unc-13-4A - chr3L 7309431 intron unc-13-4A - chr3L_4_7305001 chr3L_7305001 RAL-313 239 chr3L 7793728 7793739 chr3L 7800780 7800791 297 4 7052 1.0 0.5 0.8 2.2 7063 chr3L 7793728 intron CG32369 - chr3L 7797260 intron CG32369 - chr3L 7800791 intron CG32369 - chr3L_4_7795001 chr3L_7795001 RAL-313 240 chr3L 7869669 7869673 chr3L 7869746 7869748 5 77 3.0 0.5 1.8 1.8 79 chr3L 7869669 exon CG32365 + chr3L 7869708 exon CG32365 + chr3L 7869748 exon CG32365 + chr3L_5_7865001 chr3L_7865001 RAL-313 241 chr3L 7916830 7916855 chr3L 7926000 7926026 roo 4 9171 0.5 0.0 0.2 3.3 9196 chr3L 7916830 3` UTR syd - chr3L 7921428 intron syd - chr3L 7926026 3` UTR syd - chr3L_4_7920001 chr3L_7920001 RAL-313 242 chr3L 8393298 8393438 chr3L 8393384 8393553 4 100 0.0 0.0 0.0 4.0 255 chr3L 8393298 exon Jon66Cii - chr3L 8393426 exon Jon66Cii - chr3L 8393553 exon Jon66Cii - chr3L_4_8390001 chr3L_8390001 RAL-313 243 chr3L 8447028 8447058 chr3L 8447109 8447139 5 81 1.0 1.5 1.2 2.3 111 chr3L 8447028 intron CG6983 - chr3L 8447084 intron CG6983 - chr3L 8447139 intron CG6983 - chr3L_5_8445001 chr3L_8445001 RAL-313 244 chr3L 8772059 8772075 chr3L 8772137 8772153 5 78 1.0 0.5 0.8 2.8 94 chr3L 8772059 intron Fhos + chr3L 8772106 intron Fhos + chr3L 8772153 intron Fhos + chr3L_5_8770001 chr3L_8770001 RAL-313 245 chr3L 9013691 9013691 chr3L 18417066 18417066 4 9403375 3.0 2.0 2.5 1.1 9403375 chr3L 9013691 intron Doc2 - chr3L 13715378 intron bru-3 - chr3L 18417066 intergenic not near genes chr3L_4_13715001 chr3L_13715001 RAL-313 246 chr3L 9130568 9130579 chr3L 9134329 9134340 412 4 3761 1.5 0.0 0.8 2.2 3772 chr3L 9130568 intergenic bol - chr3L 9132454 intergenic not near genes chr3L 9134340 intergenic Dhpr + chr3L_4_9130001 chr3L_9130001 RAL-313 247 chr3L 9524046 9524058 chr3L 9524126 9524138 5 80 0.0 1.0 0.5 3.3 92 chr3L 9524046 intron CG33700 - chr3L 9524092 intron CG33700 - chr3L 9524138 intron CG33700 - chr3L_5_9520001 chr3L_9520001 RAL-313 248 chr3L 9575907 9575933 chr3L 9580985 9581011 jockey 6 5078 1.5 0.0 0.8 3.3 5104 chr3L 9575907 intron CG42673 + chr3L 9578459 intron CG42673 + chr3L 9581011 intron CG42673 + chr3L_6_9575001 chr3L_9575001 RAL-313 249 chr3L 9817124 9817142 chr3L 9817211 9817229 5 87 1.0 0.0 0.5 3.3 105 chr3L 9817124 intron CG43897 + chr3L 9817176 intron CG43897 + chr3L 9817229 intron CG43897 + chr3L_5_9815001 chr3L_9815001 RAL-313 250 chr3L 9929677 9929696 chr3L 9938457 9938476 roo 4 8780 4.0 0.5 2.2 1.2 8799 chr3L 9929677 intron CG34356 + chr3L 9934076 intron CG34356 + chr3L 9938476 intron CG34356 + chr3L_4_9930001 chr3L_9930001 RAL-313 251 chr3L 9989107 9989141 chr3L 9989402 9989435 5 295 0.5 0.5 0.5 3.3 328 chr3L 9989107 intron dpr6 + chr3L 9989271 intron dpr6 + chr3L 9989435 intron dpr6 + chr3L_5_9985001 chr3L_9985001 RAL-313 252 chr3L 9990500 9990527 chr3L 9990602 9990631 4 104 0.0 1.0 0.5 2.7 131 chr3L 9990500 intron dpr6 + chr3L 9990566 intron dpr6 + chr3L 9990631 intron dpr6 + chr3L_4_9990001 chr3L_9990001 RAL-313 253 chr3L 10007192 10007206 chr3L 10007295 10007308 4 103 1.0 1.5 1.2 1.8 116 chr3L 10007192 intron dpr6 + chr3L 10007250 intron dpr6 + chr3L 10007308 intron dpr6 + chr3L_4_10005001 chr3L_10005001 RAL-313 254 chr3L 10248970 10249129 chr3L 10249048 10249206 6 78 0.0 0.0 0.0 6.0 236 chr3L 10248970 intergenic CR44540 - chr3L 10249088 intergenic CR44540 - chr3L 10249206 intergenic not near genes chr3L_6_10245001 chr3L_10245001 RAL-313 255 chr3L 10308752 10308774 chr3L 10308829 10308851 6 77 0.0 1.5 0.8 3.3 99 chr3L 10308752 intergenic not near genes chr3L 10308802 intergenic not near genes chr3L 10308851 intergenic not near genes chr3L_6_10305001 chr3L_10305001 RAL-313 256 chr3L 10619968 10619988 chr3L 10622761 10622781 5 2793 7.0 6.0 6.5 0.7 2813 chr3L 10619968 intergenic not near genes chr3L 10621374 intergenic not near genes chr3L 10622781 intergenic CG42521 - chr3L_5_10620001 chr3L_10620001 RAL-313 257 chr3L 10654977 10654995 chr3L 10655057 10655075 6 80 0.5 1.5 1.0 3.0 98 chr3L 10654977 intron CG32066 - chr3L 10655026 intron CG32066 - chr3L 10655075 intron CG32066 - chr3L_6_10655001 chr3L_10655001 RAL-313 258 chr3L 10705115 10705136 chr3L 10705384 10705406 7 270 1.5 1.0 1.2 3.2 291 chr3L 10705115 intergenic not near genes chr3L 10705260 intergenic not near genes chr3L 10705406 intergenic not near genes chr3L_7_10705001 chr3L_10705001 RAL-313 259 chr3L 10865050 10865077 chr3L 10865130 10865157 8 80 0.5 1.0 0.8 4.4 107 chr3L 10865050 intron tna + chr3L 10865104 intron tna + chr3L 10865157 intron tna + chr3L_8_10865001 chr3L_10865001 RAL-313 260 chr3L 11094196 11094214 chr3L 11094277 11094295 4 81 0.5 2.5 1.5 1.6 99 chr3L 11094196 exon CG6279 - chr3L 11094246 exon CG6279 - chr3L 11094295 exon CG6279 - chr3L_4_11090001 chr3L_11090001 RAL-313 261 chr3L 11723086 11723113 chr3L 11727881 11727908 Doc 7 4795 0.0 1.0 0.5 4.7 4822 chr3L 11723086 3` UTR Bmcp + chr3L 11725497 intron Bmcp + chr3L 11727908 3` UTR Bmcp + chr3L_7_11725001 chr3L_11725001 RAL-313 262 chr3L 11811458 11811482 chr3L 11811536 11811560 6 78 0.0 0.0 0.0 6.0 102 chr3L 11811458 intron CG42255 - chr3L 11811509 intron CG42255 - chr3L 11811560 exon CG42255 - chr3L_6_11810001 chr3L_11810001 RAL-313 263 chr3L 11850143 11850166 chr3L 11850237 11850261 9 95 1.0 0.0 0.5 6.0 118 chr3L 11850143 intergenic not near genes chr3L 11850202 intergenic CG44837 - chr3L 11850261 intergenic CG44837 - chr3L_9_11850001 chr3L_11850001 RAL-313 264 chr3L 12052705 12052724 chr3L 12052794 12052813 4 89 2.0 2.0 2.0 1.3 108 chr3L 12052705 intron rols - chr3L 12052759 intron rols - chr3L 12052813 intron rols - chr3L_4_12050001 chr3L_12050001 RAL-313 265 chr3L 12319735 12319767 chr3L 12319882 12319914 9 148 1.0 0.5 0.8 5.0 179 chr3L 12319735 intergenic not near genes chr3L 12319824 intergenic not near genes chr3L 12319914 intergenic not near genes chr3L_9_12315001 chr3L_12315001 RAL-313 266 chr3L 12894797 12894818 chr3L 12894875 12894896 4 78 3.0 3.0 3.0 1.0 99 chr3L 12894797 intergenic CG14118 + chr3L 12894846 intergenic CG14118 + chr3L 12894896 intergenic CG14118 + chr3L_4_12890001 chr3L_12890001 RAL-313 267 chr3L 12957786 12957816 chr3L 12962268 12962298 copia 5 4482 1.5 0.5 1.0 2.5 4512 chr3L 12957786 intergenic not near genes chr3L 12960042 intergenic not near genes chr3L 12962298 intergenic not near genes chr3L_5_12960001 chr3L_12960001 RAL-313 268 chr3L 13074039 13074061 chr3L 13074172 13074194 6 133 4.0 0.5 2.2 1.9 155 chr3L 13074039 intergenic not near genes chr3L 13074116 intergenic not near genes chr3L 13074194 intergenic not near genes chr3L_6_13070001 chr3L_13070001 RAL-313 269 chr3L 13311025 13311031 chr3L 13311106 13311112 5 81 3.0 5.0 4.0 1.0 87 chr3L 13311025 intergenic not near genes chr3L 13311068 intergenic not near genes chr3L 13311112 intergenic not near genes chr3L_5_13310001 chr3L_13310001 RAL-313 270 chr3L 13525176 13525185 chr3L 13532972 13532981 roo 4 7796 3.0 2.0 2.5 1.1 7805 chr3L 13525176 intergenic not near genes chr3L 13529078 intergenic not near genes chr3L 13532981 intergenic not near genes chr3L_4_13525001 chr3L_13525001 RAL-313 271 chr3L 13677534 13677543 chr3L 13677611 13677620 6 77 2.5 1.0 1.8 2.1 86 chr3L 13677534 intron bru-3 - chr3L 13677577 intron bru-3 - chr3L 13677620 intron bru-3 - chr3L_6_13675001 chr3L_13675001 RAL-313 272 chr3L 13898681 13898695 chr3L 13898764 13898778 5 83 0.5 1.0 0.8 2.8 97 chr3L 13898681 intron dysc - chr3L 13898730 intron dysc - chr3L 13898778 intron dysc - chr3L_5_13895001 chr3L_13895001 RAL-313 273 chr3L 13901586 13901601 chr3L 13901663 13901678 4 77 0.0 0.5 0.2 3.3 92 chr3L 13901586 intron dysc - chr3L 13901632 intron dysc - chr3L 13901678 intron dysc - chr3L_4_13900001 chr3L_13900001 RAL-313 274 chr3L 14004441 14004469 chr3L 14004520 14004548 5 78 1.0 0.5 0.8 2.8 107 chr3L 14004441 intron upSET + chr3L 14004494 intron upSET + chr3L 14004548 intron upSET + chr3L_5_14000001 chr3L_14000001 RAL-313 275 chr3L 14295985 14296010 chr3L 14296471 14296496 roo 4 486 1.0 1.0 1.0 2.0 511 chr3L 14295985 intron fz + chr3L 14296240 intron fz + chr3L 14296496 intron fz + chr3L_4_14295001 chr3L_14295001 RAL-313 276 chr3L 14546606 14546797 chr3L 14546687 14546878 4 81 0.0 0.5 0.2 3.3 272 chr3L 14546606 intron CG9238 - chr3L 14546742 intron CG9238 - chr3L 14546878 intron CG9238 - chr3L_4_14545001 chr3L_14545001 RAL-313 277 chr3L 15533127 15533154 chr3L 15533208 15533236 5 82 0.0 0.5 0.2 4.2 109 chr3L 15533127 intergenic not near genes chr3L 15533182 intergenic not near genes chr3L 15533236 intergenic not near genes chr3L_5_15530001 chr3L_15530001 RAL-313 278 chr3L 15832267 15832285 chr3L 15832348 15832366 6 81 0.0 1.0 0.5 4.0 99 chr3L 15832267 intergenic CG12713 +,dbo + chr3L 15832316 intergenic CG12713 +,dbo + chr3L 15832366 intergenic CG12713 +,dbo + chr3L_6_15830001 chr3L_15830001 RAL-313 279 chr3L 15899230 15899259 chr3L 15899797 15899826 jockey 4 567 0.5 1.0 0.8 2.2 596 chr3L 15899230 intergenic pHCl - chr3L 15899528 intergenic pHCl - chr3L 15899826 intergenic sff - chr3L_4_15895001 chr3L_15895001 RAL-313 280 chr3L 16359957 16359984 chr3L 16360043 16360070 5 86 0.5 1.0 0.8 2.8 113 chr3L 16359957 intron CG45057 - chr3L 16360014 intron CG45057 - chr3L 16360070 intron CG45057 - chr3L_5_16360001 chr3L_16360001 RAL-313 281 chr3L 16493974 16494003 chr3L 16494491 16494520 jockey 6 517 1.5 0.5 1.0 3.0 546 chr3L 16493974 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494247 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494520 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_6_16490001 chr3L_16490001 RAL-313 282 chr3L 16540057 16540083 chr3L 16540145 16540171 4 88 0.5 0.0 0.2 3.3 114 chr3L 16540057 intron CG43373 - chr3L 16540114 intron CG43373 - chr3L 16540171 intron CG43373 - chr3L_4_16540001 chr3L_16540001 RAL-313 283 chr3L 16941404 16941413 chr3L 16941505 16941514 4 101 1.5 0.0 0.8 2.2 110 chr3L 16941404 intron Cpr73D - chr3L 16941459 intron Cpr73D - chr3L 16941514 intron Cpr73D - chr3L_4_16940001 chr3L_16940001 RAL-313 284 chr3L 16945726 16945742 chr3L 16954879 16954895 roo 6 9152 1.0 0.0 0.5 4.0 9169 chr3L 16945726 exon Obp73a + chr3L 16950310 intergenic not near genes chr3L 16954895 5` UTR Nc73EF + chr3L_6_16950001 chr3L_16950001 RAL-313 285 chr3L 17052598 17052612 chr3L 17052701 17052715 4 102 1.5 3.0 2.2 1.2 117 chr3L 17052598 intron rogdi + chr3L 17052656 intron rogdi + chr3L 17052715 intron rogdi + chr3L_4_17050001 chr3L_17050001 RAL-313 286 chr3L 17149262 17149286 chr3L 17149365 17149389 4 103 0.5 0.0 0.2 3.3 127 chr3L 17149262 intron Rbp6 - chr3L 17149326 intron Rbp6 - chr3L 17149389 intron Rbp6 - chr3L_4_17145001 chr3L_17145001 RAL-313 287 chr3L 17516990 17517002 chr3L 17524548 17524560 412 4 7558 1.5 1.5 1.5 1.6 7570 chr3L 17516990 intron CG7564 + chr3L 17520775 intron CG7564 + chr3L 17524560 3` UTR CG7564 + chr3L_4_17520001 chr3L_17520001 RAL-313 288 chr3L 17624343 17624359 chr3L 17624420 17624436 4 77 1.0 1.5 1.2 1.8 93 chr3L 17624343 intron CG7510 + chr3L 17624390 intron CG7510 + chr3L 17624436 intron CG7510 + chr3L_4_17620001 chr3L_17620001 RAL-313 289 chr3L 17898945 17898956 chr3L 17899021 17899032 5 76 1.0 1.0 1.0 2.5 87 chr3L 17898945 3` UTR Prestin - chr3L 17898988 3` UTR Prestin - chr3L 17899032 3` UTR Prestin - chr3L_5_17895001 chr3L_17895001 RAL-313 290 chr3L 18029968 18029981 chr3L 18030044 18030058 4 77 0.5 0.0 0.2 3.3 90 chr3L 18029968 intron Eip75B - chr3L 18030013 intron Eip75B - chr3L 18030058 intron Eip75B - chr3L_4_18030001 chr3L_18030001 RAL-313 291 chr3L 18160539 18160560 chr3L 18160627 18160648 4 88 0.0 0.0 0.0 4.0 109 chr3L 18160539 intron CG13699 - chr3L 18160594 intron CG13699 - chr3L 18160648 intron CG13699 - chr3L_4_18160001 chr3L_18160001 RAL-313 292 chr3L 18634385 18634412 chr3L 18634462 18634488 5 77 0.0 0.0 0.0 5.0 103 chr3L 18634385 intron MYPT-75D + chr3L 18634436 intron MYPT-75D + chr3L 18634488 intron MYPT-75D + chr3L_5_18630001 chr3L_18630001 RAL-313 293 chr3L 19117042 19117073 chr3L 19124489 19124520 mdg1 9 7446 0.5 0.0 0.2 7.5 7478 chr3L 19117042 intron CG14082 - chr3L 19120781 intron CG14082 - chr3L 19124520 intron CG14082 - chr3L_9_19120001 chr3L_19120001 RAL-313 294 chr3L 19527943 19527959 chr3L 19528022 19528038 4 79 0.0 1.5 0.8 2.2 95 chr3L 19527943 intergenic not near genes chr3L 19527990 intergenic not near genes chr3L 19528038 intergenic not near genes chr3L_4_19525001 chr3L_19525001 RAL-313 295 chr3L 20590071 20590085 chr3L 20590608 20590624 412 5 539 2.0 0.5 1.2 2.3 553 chr3L 20590071 intergenic not near genes chr3L 20590348 intergenic not near genes chr3L 20590624 intergenic not near genes chr3L_5_20590001 chr3L_20590001 RAL-313 296 chr3L 21361727 21361741 chr3L 21362681 21362693 G2 5 954 0.0 0.5 0.2 4.2 966 chr3L 21361727 intergenic CG32440 + chr3L 21362210 intergenic not near genes chr3L 21362693 intergenic not near genes chr3L_5_21360001 chr3L_21360001 RAL-313 297 chr3L 21498838 21498853 chr3L 21500473 21500488 1360 5 1636 1.0 2.0 1.5 2.0 1650 chr3L 21498838 intron Glg1 - chr3L 21499663 intron Glg1 - chr3L 21500488 intron Glg1 - chr3L_5_21495001 chr3L_21495001 RAL-313 298 chr3L 21639205 21639218 chr3L 21639284 21639297 4 78 1.0 2.5 1.8 1.4 92 chr3L 21639205 intergenic CG32444 +,CG32445 + chr3L 21639251 intergenic CG32445 +,CG32444 + chr3L 21639297 intergenic CG32445 +,CG32444 + chr3L_4_21635001 chr3L_21635001 RAL-313 299 chr3L 22124812 22124832 chr3L 22124895 22124915 5 83 1.5 1.5 1.5 2.0 103 chr3L 22124812 intergenic not near genes chr3L 22124864 intergenic not near genes chr3L 22124915 intergenic not near genes chr3L_5_22120001 chr3L_22120001 RAL-313 300 chr3L 22308666 22308687 chr3L 22308750 22308771 7 84 1.0 0.0 0.5 4.7 105 chr3L 22308666 intron Ten-m - chr3L 22308718 intron Ten-m - chr3L 22308771 intron Ten-m - chr3L_7_22305001 chr3L_22305001 RAL-313 301 chr3L 22408171 22408187 chr3L 22410576 22410592 5 2405 5.0 5.5 5.2 0.8 2421 chr3L 22408171 intergenic Ten-m - chr3L 22409382 intergenic not near genes chr3L 22410592 intergenic not near genes chr3L_5_22405001 chr3L_22405001 RAL-313 302 chr3L 22507125 22507149 chr3L 22507209 22507236 4 86 0.0 0.5 0.2 3.3 111 chr3L 22507125 intergenic not near genes chr3L 22507180 intergenic not near genes chr3L 22507236 intergenic not near genes chr3L_4_22505001 chr3L_22505001 RAL-313 303 chr3L 22853476 22853700 chr3L 22853563 22853786 4 86 0.5 1.5 1.0 2.0 310 chr3L 22853476 5` UTR,5` UTR CR43426 +,CG32462 - chr3L 22853631 5` UTR CR43426 + chr3L 22853786 5` UTR CR43426 + chr3L_4_22850001 chr3L_22850001 RAL-313 304 chr3L 22865981 22866007 chr3L 22867113 22867140 Doc 8 1133 1.5 0.5 1.0 4.0 1159 chr3L 22865981 intron CG33170 + chr3L 22866560 intron CG33170 + chr3L 22867140 intron CG33170 + chr3L_8_22865001 chr3L_22865001 RAL-313 305 chr3L 22909023 22909049 chr3L 22909114 22909140 9 91 1.5 2.0 1.8 3.2 117 chr3L 22909023 intergenic CR45661 + chr3L 22909082 intergenic CR45661 + chr3L 22909140 intergenic CR45661 + chr3L_9_22905001 chr3L_22905001 RAL-313 306 chr3L 23042223 23042253 chr3L 23048976 23049006 gypsy6 6 6753 1.5 1.5 1.5 2.4 6783 chr3L 23042223 intergenic not near genes chr3L 23045614 intergenic not near genes chr3L 23049006 intergenic not near genes chr3L_6_23045001 chr3L_23045001 RAL-313 307 chr3L 23285644 23285659 chr3L 23286324 23286339 4 679 1.5 0.5 1.0 2.0 695 chr3L 23285644 3` UTR nAChRalpha4 + chr3L 23285992 3` UTR nAChRalpha4 + chr3L 23286339 3` UTR nAChRalpha4 + chr3L_4_23285001 chr3L_23285001 RAL-313 308 chr3L 23450107 23450116 chr3L 23450609 23450618 5 502 1.5 0.5 1.0 2.5 511 chr3L 23450107 intergenic not near genes chr3L 23450362 intergenic not near genes chr3L 23450618 intergenic not near genes chr3L_5_23450001 chr3L_23450001 RAL-313 309 chr3R 4609558 4609579 chr3R 4610722 4610743 1360 4 1164 1.5 1.5 1.5 1.6 1185 chr3R 4609558 intergenic not near genes chr3R 4610150 intergenic not near genes chr3R 4610743 intergenic not near genes chr3R_4_4610001 chr3R_4610001 RAL-313 310 chr3R 4683184 4683205 chr3R 4684943 4684964 S-element 5 1759 1.5 1.0 1.2 2.3 1780 chr3R 4683184 intron CG43427 + chr3R 4684074 intron CG43427 + chr3R 4684964 intron CG43427 + chr3R_5_4680001 chr3R_4680001 RAL-313 311 chr3R 5278104 5278115 chr3R 5278181 5278196 6 80 0.5 3.0 1.8 2.1 92 chr3R 5278104 intron mtd - chr3R 5278150 intron mtd - chr3R 5278196 intron mtd - chr3R_6_5275001 chr3R_5275001 RAL-313 312 chr3R 5338394 5338432 chr3R 5343571 5343609 Rt1c 6 5177 0.0 0.5 0.2 5.0 5215 chr3R 5338394 intron mtd - chr3R 5341002 intron mtd - chr3R 5343609 intron mtd - chr3R_6_5340001 chr3R_5340001 RAL-313 313 chr3R 5385981 5386005 chr3R 5386152 5386175 4 170 0.5 1.5 1.0 2.0 194 chr3R 5385981 intron kkv - chr3R 5386078 intron kkv - chr3R 5386175 intron kkv - chr3R_4_5385001 chr3R_5385001 RAL-313 314 chr3R 5445977 5445991 chr3R 5452437 5452451 Burdock 4 6460 1.5 1.0 1.2 1.8 6474 chr3R 5445977 intron CG14669 + chr3R 5449214 intron CG14669 + chr3R 5452451 intron CG14669 + chr3R_4_5445001 chr3R_5445001 RAL-313 315 chr3R 5747013 5747038 chr3R 5753204 5753229 diver 4 6190 1.0 0.0 0.5 2.7 6216 chr3R 5747013 intergenic Madm + chr3R 5750121 intergenic not near genes chr3R 5753229 intergenic CG2091 - chr3R_4_5750001 chr3R_5750001 RAL-313 316 chr3R 5840824 5840849 chr3R 5840913 5840938 6 88 0.5 0.0 0.2 5.0 114 chr3R 5840824 intergenic CG1213 + chr3R 5840881 intergenic CG1213 + chr3R 5840938 intergenic CG1213 + chr3R_6_5840001 chr3R_5840001 RAL-313 317 chr3R 6015961 6015991 chr3R 6024442 6024471 Tirant 5 8481 0.0 1.0 0.5 3.3 8510 chr3R 6015961 intergenic not near genes chr3R 6020216 intergenic not near genes chr3R 6024471 intergenic not near genes chr3R_5_6020001 chr3R_6020001 RAL-313 318 chr3R 6048460 6048476 chr3R 6048542 6048559 8 83 2.0 0.5 1.2 3.6 99 chr3R 6048460 intergenic not near genes chr3R 6048510 intergenic not near genes chr3R 6048559 intergenic not near genes chr3R_8_6045001 chr3R_6045001 RAL-313 319 chr3R 6461598 6461600 chr3R 6461678 6461680 4 80 0.0 0.5 0.2 3.3 82 chr3R 6461598 intergenic not near genes chr3R 6461639 intergenic not near genes chr3R 6461680 intergenic not near genes chr3R_4_6460001 chr3R_6460001 RAL-313 320 chr3R 6805026 6805041 chr3R 6805103 6805118 5 77 0.0 0.5 0.2 4.2 92 chr3R 6805026 intergenic not near genes chr3R 6805072 intergenic not near genes chr3R 6805118 intergenic not near genes chr3R_5_6805001 chr3R_6805001 RAL-313 321 chr3R 6890204 6890229 chr3R 6890390 6890415 6 186 1.0 0.5 0.8 3.3 211 chr3R 6890204 intergenic not near genes chr3R 6890310 intergenic not near genes chr3R 6890415 intergenic not near genes chr3R_6_6890001 chr3R_6890001 RAL-313 322 chr3R 7103288 7103299 chr3R 7103364 7103375 4 76 0.0 1.0 0.5 2.7 87 chr3R 7103288 intron Alh - chr3R 7103332 intron Alh - chr3R 7103375 intron Alh - chr3R_4_7100001 chr3R_7100001 RAL-313 323 chr3R 7508911 7508931 chr3R 7508992 7509012 4 80 1.0 3.0 2.0 1.3 101 chr3R 7508911 intergenic alpha-Est8 - chr3R 7508962 intergenic alpha-Est8 - chr3R 7509012 intergenic alpha-Est8 - chr3R_4_7505001 chr3R_7505001 RAL-313 324 chr3R 7951466 7951477 chr3R 7951565 7951576 7 99 2.0 0.5 1.2 3.2 110 chr3R 7951466 intron dsx - chr3R 7951521 intron dsx - chr3R 7951576 intron dsx - chr3R_7_7950001 chr3R_7950001 RAL-313 325 chr3R 8207554 8207587 chr3R 8208399 8208432 F-element 7 845 0.0 0.5 0.2 5.8 878 chr3R 8207554 intergenic not near genes chr3R 8207993 intergenic not near genes chr3R 8208432 intergenic not near genes chr3R_7_8205001 chr3R_8205001 RAL-313 326 chr3R 8339243 8339247 chr3R 21907534 21907534 9 13568288 8.0 7.5 7.8 1.0 13568291 chr3R 8339243 intergenic not near genes chr3R 15123388 intron CG42788 - chr3R 21907534 intergenic CG6678 + chr3R_9_15120001 chr3R_15120001 RAL-313 327 chr3R 8403007 8403030 chr3R 8412172 8412196 roo 4 9166 1.5 2.5 2.0 1.3 9189 chr3R 8403007 intron CG45263 - chr3R 8407602 intron CG45263 - chr3R 8412196 intron CG45263 - chr3R_4_8405001 chr3R_8405001 RAL-313 328 chr3R 9101838 9101867 chr3R 9101936 9101965 5 98 0.5 0.5 0.5 3.3 127 chr3R 9101838 intron pum - chr3R 9101902 intron pum - chr3R 9101965 intron pum - chr3R_5_9100001 chr3R_9100001 RAL-313 329 chr3R 11174607 11174611 chr3R 11175320 11175325 4 714 5.5 7.0 6.2 0.6 718 chr3R 11174607 exon Ugt86Dj - chr3R 11174966 intron Ugt86Dj - chr3R 11175325 exon Ugt86Dj - chr3R_4_11170001 chr3R_11170001 RAL-313 330 chr3R 11325350 11325356 chr3R 11325444 11325451 5 95 3.5 2.5 3.0 1.2 101 chr3R 11325350 intergenic not near genes chr3R 11325400 intergenic not near genes chr3R 11325451 intergenic not near genes chr3R_5_11325001 chr3R_11325001 RAL-313 331 chr3R 11664798 11664814 chr3R 11664890 11664906 4 92 2.0 1.0 1.5 1.6 108 chr3R 11664798 intron CG42327 + chr3R 11664852 intron CG42327 + chr3R 11664906 intron CG42327 + chr3R_4_11660001 chr3R_11660001 RAL-313 332 chr3R 11734161 11734177 chr3R 11734280 11734296 5 118 1.0 0.5 0.8 2.8 135 chr3R 11734161 intergenic not near genes chr3R 11734228 intergenic not near genes chr3R 11734296 intergenic not near genes chr3R_5_11730001 chr3R_11730001 RAL-313 333 chr3R 12443725 12443753 chr3R 12443885 12443913 10 160 0.0 1.0 0.5 6.7 188 chr3R 12443725 intron Desat1 + chr3R 12443819 intron Desat1 + chr3R 12443913 intron Desat1 + chr3R_10_12440001 chr3R_12440001 RAL-313 334 chr3R 12825610 12825631 chr3R 12825686 12825704 6 75 0.5 1.0 0.8 3.3 94 chr3R 12825610 intergenic not near genes chr3R 12825657 intergenic not near genes chr3R 12825704 intergenic not near genes chr3R_6_12825001 chr3R_12825001 RAL-313 335 chr3R 13206658 13206674 chr3R 13206895 13206911 4 237 1.0 1.0 1.0 2.0 253 chr3R 13206658 intergenic not near genes chr3R 13206784 intergenic not near genes chr3R 13206911 intergenic not near genes chr3R_4_13205001 chr3R_13205001 RAL-313 336 chr3R 13276992 13277023 chr3R 13277081 13277112 5 89 0.5 3.0 1.8 1.8 120 chr3R 13276992 intergenic not near genes chr3R 13277052 intergenic not near genes chr3R 13277112 intergenic not near genes chr3R_5_13275001 chr3R_13275001 RAL-313 337 chr3R 13313434 13313446 chr3R 13313533 13313545 4 99 1.5 0.5 1.0 2.0 111 chr3R 13313434 intergenic CG44142 - chr3R 13313490 intergenic CG44142 - chr3R 13313545 intergenic CG44142 - chr3R_4_13310001 chr3R_13310001 RAL-313 338 chr3R 13693028 13693028 chr3R 21907534 21907536 7 8214507 1.0 7.5 4.2 1.3 8214508 chr3R 13693028 3` UTR flfl + chr3R 17800282 exon CG17803 - chr3R 21907536 intergenic CG6678 + chr3R_7_17800001 chr3R_17800001 RAL-313 339 chr3R 13863681 13863698 chr3R 13863768 13863786 5 88 0.5 1.5 1.0 2.5 105 chr3R 13863681 intergenic not near genes chr3R 13863734 intergenic not near genes chr3R 13863786 intergenic not near genes chr3R_5_13860001 chr3R_13860001 RAL-313 340 chr3R 14339622 14339646 chr3R 14339768 14339792 6 146 0.5 1.0 0.8 3.3 170 chr3R 14339622 intron NK7.1 - chr3R 14339707 intron NK7.1 - chr3R 14339792 intron NK7.1 - chr3R_6_14335001 chr3R_14335001 RAL-313 341 chr3R 14548579 14548601 chr3R 14548667 14548689 5 88 1.0 1.0 1.0 2.5 110 chr3R 14548579 intron Pde6 - chr3R 14548634 intron Pde6 - chr3R 14548689 intron Pde6 - chr3R_5_14545001 chr3R_14545001 RAL-313 342 chr3R 14577959 14577975 chr3R 14578075 14578091 4 116 2.0 0.0 1.0 2.0 132 chr3R 14577959 intron stumps + chr3R 14578025 intron stumps + chr3R 14578091 intron stumps + chr3R_4_14575001 chr3R_14575001 RAL-313 343 chr3R 14589055 14589070 chr3R 14589156 14589171 5 101 0.0 0.0 0.0 5.0 116 chr3R 14589055 intron stumps + chr3R 14589113 intron stumps + chr3R 14589171 intron stumps + chr3R_5_14585001 chr3R_14585001 RAL-313 344 chr3R 14774102 14774128 chr3R 14774243 14774269 6 141 0.5 0.0 0.2 5.0 167 chr3R 14774102 intron jvl + chr3R 14774186 intron jvl + chr3R 14774269 intron jvl + chr3R_6_14770001 chr3R_14770001 RAL-313 345 chr3R 14821620 14821630 chr3R 14821769 14821779 5 149 0.5 3.0 1.8 1.8 159 chr3R 14821620 intron btsz - chr3R 14821700 intron btsz - chr3R 14821779 intron btsz - chr3R_5_14820001 chr3R_14820001 RAL-313 346 chr3R 14842571 14842595 chr3R 14842654 14842675 4 82 0.0 0.5 0.2 3.3 104 chr3R 14842571 intron btsz - chr3R 14842623 intron btsz - chr3R 14842675 intron btsz - chr3R_4_14840001 chr3R_14840001 RAL-313 347 chr3R 14994589 14994617 chr3R 14994678 14994706 4 88 1.5 2.5 2.0 1.3 117 chr3R 14994589 intergenic not near genes chr3R 14994648 intergenic not near genes chr3R 14994706 intergenic not near genes chr3R_4_14990001 chr3R_14990001 RAL-313 348 chr3R 15406155 15406164 chr3R 15406236 15406245 4 81 1.5 0.0 0.8 2.2 90 chr3R 15406155 intron CG6125 - chr3R 15406200 intron CG6125 - chr3R 15406245 intron CG6125 - chr3R_4_15405001 chr3R_15405001 RAL-313 349 chr3R 16246524 16246552 chr3R 16246600 16246628 6 76 0.0 0.5 0.2 5.0 104 chr3R 16246524 intron tara + chr3R 16246576 intron tara + chr3R 16246628 intron tara + chr3R_6_16245001 chr3R_16245001 RAL-313 350 chr3R 16472594 16472599 chr3R 16472669 16472674 4 75 0.5 1.0 0.8 2.2 80 chr3R 16472594 intergenic Gyc-89Da + chr3R 16472634 5` UTR Gyc-89Da + chr3R 16472674 5` UTR Gyc-89Da + chr3R_4_16470001 chr3R_16470001 RAL-313 351 chr3R 16555343 16555361 chr3R 16555436 16555454 8 93 0.0 0.5 0.2 6.7 111 chr3R 16555343 intron CG42342 + chr3R 16555398 intron CG42342 + chr3R 16555454 intron CG42342 + chr3R_8_16555001 chr3R_16555001 RAL-313 352 chr3R 16816327 16816339 chr3R 16816498 16816511 5 172 0.0 0.0 0.0 5.0 184 chr3R 16816327 intron abd-A - chr3R 16816419 intron abd-A - chr3R 16816511 intron abd-A - chr3R_5_16815001 chr3R_16815001 RAL-313 353 chr3R 16921828 16921844 chr3R 16921912 16921927 6 84 2.0 0.0 1.0 3.0 99 chr3R 16921828 intron iab-8 - chr3R 16921878 intron iab-8 - chr3R 16921927 intron iab-8 - chr3R_6_16920001 chr3R_16920001 RAL-313 354 chr3R 17346692 17346715 chr3R 17348255 17348278 F-element 9 1563 0.5 2.0 1.2 4.1 1586 chr3R 17346692 intron beat-IIa - chr3R 17347485 intron beat-IIa - chr3R 17348278 intron beat-IIa - chr3R_9_17345001 chr3R_17345001 RAL-313 355 chr3R 17554351 17554385 chr3R 17554628 17554662 5 277 1.5 1.5 1.5 2.0 311 chr3R 17554351 intergenic not near genes chr3R 17554506 intergenic not near genes chr3R 17554662 intergenic not near genes chr3R_5_17550001 chr3R_17550001 RAL-313 356 chr3R 17845207 17845218 chr3R 17845284 17845295 7 77 0.5 4.5 2.5 2.0 88 chr3R 17845207 intron tinc + chr3R 17845251 intron tinc + chr3R 17845295 intron tinc + chr3R_7_17845001 chr3R_17845001 RAL-313 357 chr3R 17925866 17925889 chr3R 17927333 17927356 hobo 4 1467 1.0 1.5 1.2 1.8 1490 chr3R 17925866 intron cpo + chr3R 17926611 intron cpo + chr3R 17927356 intron cpo + chr3R_4_17925001 chr3R_17925001 RAL-313 358 chr3R 18101374 18101391 chr3R 18101450 18101467 4 76 0.5 1.5 1.0 2.0 93 chr3R 18101374 intron sr + chr3R 18101420 intron sr + chr3R 18101467 intron sr + chr3R_4_18100001 chr3R_18100001 RAL-313 359 chr3R 18781703 18781718 chr3R 18781779 18781792 4 76 2.5 1.0 1.8 1.4 89 chr3R 18781703 intron CG7720 - chr3R 18781748 intron CG7720 - chr3R 18781792 intron CG7720 - chr3R_4_18780001 chr3R_18780001 RAL-313 360 chr3R 18785865 18785902 chr3R 18785942 18785979 5 77 0.0 0.0 0.0 5.0 114 chr3R 18785865 intron CG7720 - chr3R 18785922 intron CG7720 - chr3R 18785979 intron CG7720 - chr3R_5_18785001 chr3R_18785001 RAL-313 361 chr3R 18812075 18812100 chr3R 18812153 18812178 6 78 1.5 1.0 1.2 2.7 103 chr3R 18812075 intron CG18208 - chr3R 18812126 intron CG18208 - chr3R 18812178 intron CG18208 - chr3R_6_18810001 chr3R_18810001 RAL-313 362 chr3R 18844363 18844387 chr3R 18844446 18844470 4 83 0.5 0.5 0.5 2.7 107 chr3R 18844363 intron CG18208 - chr3R 18844416 intron CG18208 - chr3R 18844470 intron CG18208 - chr3R_4_18840001 chr3R_18840001 RAL-313 363 chr3R 19140263 19140292 chr3R 19140711 19140737 4 447 2.0 0.0 1.0 2.0 474 chr3R 19140263 3` UTR Ppcs - chr3R 19140500 3` UTR Ppcs - chr3R 19140737 3` UTR Ppcs - chr3R_4_19140001 chr3R_19140001 RAL-313 364 chr3R 19340401 19340427 chr3R 19340478 19340504 5 77 0.0 0.5 0.2 4.2 103 chr3R 19340401 intergenic not near genes chr3R 19340452 intergenic not near genes chr3R 19340504 intergenic not near genes chr3R_5_19340001 chr3R_19340001 RAL-313 365 chr3R 19702323 19702336 chr3R 19702404 19702418 4 82 0.0 1.0 0.5 2.7 95 chr3R 19702323 intergenic not near genes chr3R 19702370 intergenic not near genes chr3R 19702418 intergenic not near genes chr3R_4_19700001 chr3R_19700001 RAL-313 366 chr3R 20008830 20008845 chr3R 20008911 20008926 4 81 1.0 1.0 1.0 2.0 96 chr3R 20008830 intergenic MED25 +,Hs6st - chr3R 20008878 intergenic MED25 +,Hs6st - chr3R 20008926 intergenic MED25 +,Hs6st - chr3R_4_20005001 chr3R_20005001 RAL-313 367 chr3R 20020168 20020173 chr3R 20020310 20020315 4 142 0.5 1.0 0.8 2.2 147 chr3R 20020168 intron CG4433 - chr3R 20020242 intron CG4433 - chr3R 20020315 intron CG4433 - chr3R_4_20020001 chr3R_20020001 RAL-313 368 chr3R 20331014 20331026 chr3R 20331500 20331512 roo 6 486 1.0 0.5 0.8 3.3 498 chr3R 20331014 intergenic Sirt2 + chr3R 20331263 intergenic Sirt2 + chr3R 20331512 intergenic not near genes chr3R_6_20330001 chr3R_20330001 RAL-313 369 chr3R 20506586 20506610 chr3R 20507389 20507413 BS 4 803 0.0 1.0 0.5 2.7 827 chr3R 20506586 intergenic Or92a + chr3R 20507000 intergenic CG4288 - chr3R 20507413 3` UTR CG4288 - chr3R_4_20505001 chr3R_20505001 RAL-313 370 chr3R 20564142 20564146 chr3R 20564495 20564499 4 353 0.5 1.0 0.8 2.2 357 chr3R 20564142 intron CG5191 + chr3R 20564320 intron CG5191 + chr3R 20564499 intron CG5191 + chr3R_4_20560001 chr3R_20560001 RAL-313 371 chr3R 20666720 20666742 chr3R 20667496 20667518 4 776 8.0 2.0 5.0 0.7 798 chr3R 20666720 intergenic not near genes chr3R 20667119 intergenic not near genes chr3R 20667518 intergenic not near genes chr3R_4_20665001 chr3R_20665001 RAL-313 372 chr3R 21761118 21761142 chr3R 21768510 21768534 mdg1 7 7392 0.5 1.0 0.8 3.9 7416 chr3R 21761118 exon CG42335 + chr3R 21764826 intron CG42335 + chr3R 21768534 exon CG42335 + chr3R_7_21760001 chr3R_21760001 RAL-313 373 chr3R 21907534 21907534 chr3R 28831801 28831805 4 6924269 8.0 1.0 4.5 0.7 6924271 chr3R 21907534 intergenic CG6678 + chr3R 25369670 intron Fur1 - chr3R 28831805 intron WASp - chr3R_4_25365001 chr3R_25365001 RAL-313 374 chr3R 21907535 21907535 chr3R 28831799 28831802 11 6924266 8.0 1.0 4.5 2.0 6924267 chr3R 21907535 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_11_25365001 chr3R_25365001 RAL-313 375 chr3R 21907536 21907536 chr3R 28831801 28831802 17 6924266 8.0 1.0 4.5 3.1 6924266 chr3R 21907536 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831802 intron WASp - chr3R_17_25365001 chr3R_25365001 RAL-313 376 chr3R 22292476 22292505 chr3R 22292556 22292585 9 80 1.0 1.0 1.0 4.5 109 chr3R 22292476 intron SKIP + chr3R 22292530 intron SKIP + chr3R 22292585 intron SKIP + chr3R_9_22290001 chr3R_22290001 RAL-313 377 chr3R 22450539 22450577 chr3R 22453179 22453217 NOF 4 2640 1.0 0.5 0.8 2.2 2678 chr3R 22450539 intron CG34376 + chr3R 22451878 intron CG34376 + chr3R 22453217 intron CG34376 + chr3R_4_22450001 chr3R_22450001 RAL-313 378 chr3R 22589789 22589814 chr3R 22590708 22590733 5 919 0.0 0.0 0.0 5.0 944 chr3R 22589789 intron Efa6 + chr3R 22590261 intron Efa6 + chr3R 22590733 intron Efa6 + chr3R_5_22590001 chr3R_22590001 RAL-313 379 chr3R 22769088 22769125 chr3R 22769165 22769202 8 77 0.0 0.5 0.2 6.7 114 chr3R 22769088 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769145 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769202 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R_8_22765001 chr3R_22765001 RAL-313 380 chr3R 22846791 22846804 chr3R 22847012 22847025 4 221 1.0 0.0 0.5 2.7 234 chr3R 22846791 intergenic CG4704 - chr3R 22846908 intergenic not near genes chr3R 22847025 intergenic not near genes chr3R_4_22845001 chr3R_22845001 RAL-313 381 chr3R 22853293 22853296 chr3R 22853370 22853373 4 77 0.5 0.5 0.5 2.7 80 chr3R 22853293 intergenic not near genes chr3R 22853333 intergenic not near genes chr3R 22853373 intergenic not near genes chr3R_4_22850001 chr3R_22850001 RAL-313 382 chr3R 23090417 23090437 chr3R 23090500 23090519 7 82 2.0 5.5 3.8 1.5 102 chr3R 23090417 intron CG13830 - chr3R 23090468 intron CG13830 - chr3R 23090519 intron CG13830 - chr3R_7_23090001 chr3R_23090001 RAL-313 383 chr3R 24730109 24730109 chr3R 24732487 24732487 Doc 4 2378 2.5 0.0 1.2 1.8 2378 chr3R 24730109 intron tok + chr3R 24731298 intron tok + chr3R 24732487 intron tok + chr3R_4_24730001 chr3R_24730001 RAL-313 384 chr3R 24865756 24865781 chr3R 24866156 24866181 4 400 1.0 0.0 0.5 2.7 425 chr3R 24865756 exon Ela + chr3R 24865968 intron Ela + chr3R 24866181 exon Ela + chr3R_4_24865001 chr3R_24865001 RAL-313 385 chr3R 25209601 25209611 chr3R 25209681 25209693 4 82 0.5 0.0 0.2 3.3 92 chr3R 25209601 intron CG13654 + chr3R 25209647 intron CG13654 + chr3R 25209693 intron CG13654 + chr3R_4_25205001 chr3R_25205001 RAL-313 386 chr3R 25284416 25284429 chr3R 25284524 25284537 5 108 1.0 3.5 2.2 1.6 121 chr3R 25284416 exon CG31300 + chr3R 25284476 exon CG31300 + chr3R 25284537 exon CG31300 + chr3R_5_25280001 chr3R_25280001 RAL-313 387 chr3R 25464501 25464510 chr3R 25464818 25464826 5 317 2.0 1.0 1.5 2.0 325 chr3R 25464501 intron Fur1 - chr3R 25464664 intron Fur1 - chr3R 25464826 intron Fur1 - chr3R_5_25460001 chr3R_25460001 RAL-313 388 chr3R 25738638 25738651 chr3R 25738726 25738739 4 88 1.0 1.0 1.0 2.0 101 chr3R 25738638 intron LpR2 - chr3R 25738688 intron LpR2 - chr3R 25738739 intron LpR2 - chr3R_4_25735001 chr3R_25735001 RAL-313 389 chr3R 25832689 25832720 chr3R 25841871 25841902 roo 7 9181 1.0 2.5 1.8 2.5 9213 chr3R 25832689 exon alpha4GT2 + chr3R 25837296 intron alpha4GT2 + chr3R 25841902 exon alpha4GT2 + chr3R_7_25835001 chr3R_25835001 RAL-313 390 chr3R 25843645 25843662 chr3R 25843775 25843792 5 130 0.0 2.0 1.0 2.5 147 chr3R 25843645 intergenic CR45653 + chr3R 25843718 intergenic CR45653 + chr3R 25843792 intergenic CR45653 + chr3R_5_25840001 chr3R_25840001 RAL-313 391 chr3R 26060402 26060436 chr3R 26060488 26060522 9 86 1.5 0.0 0.8 5.0 120 chr3R 26060402 intron CG14544 + chr3R 26060462 intron CG14544 + chr3R 26060522 intron CG14544 + chr3R_9_26060001 chr3R_26060001 RAL-313 392 chr3R 26235488 26235522 chr3R 26235570 26235604 4 82 1.0 1.0 1.0 2.0 116 chr3R 26235488 5` UTR CR42745 + chr3R 26235546 5` UTR CR42745 + chr3R 26235604 5` UTR CR42745 + chr3R_4_26235001 chr3R_26235001 RAL-313 393 chr3R 26373264 26373296 chr3R 26373347 26373379 4 83 2.0 1.0 1.5 1.6 115 chr3R 26373264 intergenic not near genes chr3R 26373322 intergenic not near genes chr3R 26373379 intergenic not near genes chr3R_4_26370001 chr3R_26370001 RAL-313 394 chr3R 26542054 26542065 chr3R 26542145 26542155 4 90 0.5 1.0 0.8 2.2 101 chr3R 26542054 intron scrib + chr3R 26542104 intron scrib + chr3R 26542155 intron scrib + chr3R_4_26540001 chr3R_26540001 RAL-313 395 chr3R 26611987 26611996 chr3R 26613908 26613917 4 1921 1.0 0.5 0.8 2.2 1930 chr3R 26611987 intergenic not near genes chr3R 26612952 intergenic not near genes chr3R 26613917 intergenic not near genes chr3R_4_26610001 chr3R_26610001 RAL-313 396 chr3R 26660647 26660664 chr3R 26660731 26660745 6 84 0.5 0.0 0.2 5.0 98 chr3R 26660647 intron beat-VII - chr3R 26660696 intron beat-VII - chr3R 26660745 intron beat-VII - chr3R_6_26660001 chr3R_26660001 RAL-313 397 chr3R 26770241 26770272 chr3R 26770318 26770349 4 77 1.0 0.5 0.8 2.2 108 chr3R 26770241 intergenic CR45563 + chr3R 26770295 intergenic CR45563 + chr3R 26770349 intergenic not near genes chr3R_4_26770001 chr3R_26770001 RAL-313 398 chr3R 26955149 26955177 chr3R 26955322 26955350 5 173 0.5 0.0 0.2 4.2 201 chr3R 26955149 intron CG6330 - chr3R 26955250 intron CG6330 - chr3R 26955350 intron CG6330 - chr3R_5_26955001 chr3R_26955001 RAL-313 399 chr3R 27193835 27193858 chr3R 27193914 27193934 7 78 0.5 0.5 0.5 4.7 99 chr3R 27193835 intron Ser - chr3R 27193884 intron Ser - chr3R 27193934 intron Ser - chr3R_7_27190001 chr3R_27190001 RAL-313 400 chr3R 27342791 27342824 chr3R 27351372 27351405 Tirant 4 8580 0.5 0.5 0.5 2.7 8614 chr3R 27342791 intron CG42534 + chr3R 27347098 intron CG42534 + chr3R 27351405 intron CG42534 + chr3R_4_27345001 chr3R_27345001 RAL-313 401 chr3R 27354820 27354848 chr3R 27355210 27355238 6 389 1.0 1.0 1.0 3.0 418 chr3R 27354820 intron CG42534 + chr3R 27355029 intron CG42534 + chr3R 27355238 intron CG42534 + chr3R_6_27355001 chr3R_27355001 RAL-313 402 chr3R 27480305 27480334 chr3R 27480397 27480426 6 92 2.5 0.0 1.2 2.7 121 chr3R 27480305 3` UTR Cyp6a18 + chr3R 27480366 3` UTR Cyp6a18 + chr3R 27480426 3` UTR Cyp6a18 + chr3R_6_27480001 chr3R_27480001 RAL-313 403 chr3R 27619704 27619729 chr3R 27619818 27619844 9 115 0.0 3.5 1.8 3.2 140 chr3R 27619704 intron Tusp + chr3R 27619774 intron Tusp + chr3R 27619844 intron Tusp + chr3R_9_27615001 chr3R_27615001 RAL-313 404 chr3R 28132490 28132510 chr3R 28132572 28132592 4 82 0.5 0.5 0.5 2.7 102 chr3R 28132490 intergenic not near genes chr3R 28132541 intergenic not near genes chr3R 28132592 intergenic not near genes chr3R_4_28130001 chr3R_28130001 RAL-313 405 chr3R 28283009 28283018 chr3R 28283638 28283645 4 628 0.5 2.5 1.5 1.6 636 chr3R 28283009 exon CG34436 + chr3R 28283327 exon CG34436 + chr3R 28283645 intergenic CG34437 +,CG34436 + chr3R_4_28280001 chr3R_28280001 RAL-313 406 chr3R 28302115 28302136 chr3R 28302548 28302575 jockey 5 438 1.0 2.5 1.8 1.8 460 chr3R 28302115 intergenic not near genes chr3R 28302345 intergenic not near genes chr3R 28302575 intergenic not near genes chr3R_5_28300001 chr3R_28300001 RAL-313 407 chr3R 28393702 28393714 chr3R 28393801 28393814 9 100 2.5 1.5 2.0 3.0 112 chr3R 28393702 intergenic not near genes chr3R 28393758 intergenic not near genes chr3R 28393814 intergenic not near genes chr3R_9_28390001 chr3R_28390001 RAL-313 408 chr3R 28484354 28484373 chr3R 28486272 28486290 10 1917 11.5 16.5 14.0 0.7 1936 chr3R 28484354 intergenic CG1894 + chr3R 28485322 exon CG1894 + chr3R 28486290 intergenic CG1894 + chr3R_10_28485001 chr3R_28485001 RAL-313 409 chr3R 28643811 28643835 chr3R 28643899 28643923 4 88 0.5 0.5 0.5 2.7 112 chr3R 28643811 intergenic not near genes chr3R 28643867 intergenic not near genes chr3R 28643923 intergenic not near genes chr3R_4_28640001 chr3R_28640001 RAL-313 410 chr3R 21907534 21907536 chr3R 28831801 28831802 20 6924266 8.0 1.0 4.5 3.6 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_20_25365001 chr3R_25365001 RAL-313 411 chr3R 29237251 29237270 chr3R 29239272 29239291 4 2021 3.5 0.5 2.0 1.3 2040 chr3R 29237251 exon CG11951 - chr3R 29238271 intron CG11951 - chr3R 29239291 exon CG31427 - chr3R_4_29235001 chr3R_29235001 RAL-313 412 chr3R 29376233 29376258 chr3R 29376310 29376335 5 77 1.5 1.0 1.2 2.3 102 chr3R 29376233 intergenic not near genes chr3R 29376284 intergenic not near genes chr3R 29376335 intergenic not near genes chr3R_5_29375001 chr3R_29375001 RAL-313 413 chr3R 29397339 29397346 chr3R 29397453 29397460 5 114 2.5 2.0 2.2 1.6 121 chr3R 29397339 intron Ptp99A + chr3R 29397400 intron Ptp99A + chr3R 29397460 intron Ptp99A + chr3R_5_29395001 chr3R_29395001 RAL-313 414 chr3R 29446997 29447016 chr3R 29447084 29447103 5 87 2.0 0.5 1.2 2.3 106 chr3R 29446997 intron Ptp99A + chr3R 29447050 intron Ptp99A + chr3R 29447103 intron Ptp99A + chr3R_5_29445001 chr3R_29445001 RAL-313 415 chr3R 29539443 29539454 chr3R 29539519 29539530 6 76 0.5 0.0 0.2 5.0 87 chr3R 29539443 intergenic not near genes chr3R 29539486 intergenic not near genes chr3R 29539530 intergenic not near genes chr3R_6_29535001 chr3R_29535001 RAL-313 416 chr3R 29738263 29738280 chr3R 29739730 29739746 hobo 6 1467 1.5 0.5 1.0 3.0 1483 chr3R 29738263 intergenic CG1969 +,CG7598 + chr3R 29739004 intron CG1969 + chr3R 29739746 5` UTR CG1969 + chr3R_6_29735001 chr3R_29735001 RAL-313 417 chr3R 29854826 29854858 chr3R 29854906 29854938 5 80 0.5 0.5 0.5 3.3 112 chr3R 29854826 3` UTR dgt1 - chr3R 29854882 exon dgt1 - chr3R 29854938 exon dgt1 - chr3R_5_29850001 chr3R_29850001 RAL-313 418 chr3R 30170758 30170767 chr3R 30170845 30170854 6 86 1.0 1.0 1.0 3.0 96 chr3R 30170758 intron CG31028 - chr3R 30170806 intron CG31028 - chr3R 30170854 intron CG31028 - chr3R_6_30170001 chr3R_30170001 RAL-313 419 chr3R 30268250 30268416 chr3R 30268329 30268497 5 80 3.0 1.5 2.2 1.6 247 chr3R 30268250 intergenic not near genes chr3R 30268374 intergenic not near genes chr3R 30268497 intergenic not near genes chr3R_5_30265001 chr3R_30265001 RAL-313 420 chr3R 30466704 30466719 chr3R 30466784 30466799 5 80 0.5 1.0 0.8 2.8 95 chr3R 30466704 intron PH4alphaEFB + chr3R 30466752 intron PH4alphaEFB + chr3R 30466799 intron PH4alphaEFB + chr3R_5_30465001 chr3R_30465001 RAL-313 421 chr3R 30498405 30498434 chr3R 30498605 30498634 5 200 0.0 1.5 0.8 2.8 229 chr3R 30498405 intron PH4alphaNE1 - chr3R 30498520 intron PH4alphaNE1 - chr3R 30498634 intron PH4alphaNE1 - chr3R_5_30495001 chr3R_30495001 RAL-313 422 chr3R 30891951 30891981 chr3R 30892176 30892206 7 225 0.0 0.0 0.0 7.0 255 chr3R 30891951 intergenic not near genes chr3R 30892078 intergenic not near genes chr3R 30892206 intergenic not near genes chr3R_7_30890001 chr3R_30890001 RAL-313 423 chr3R 31042989 31043022 chr3R 31043066 31043099 6 77 2.0 2.5 2.2 1.9 110 chr3R 31042989 intron CanA1 + chr3R 31043044 intron CanA1 + chr3R 31043099 intron CanA1 + chr3R_6_31040001 chr3R_31040001 RAL-313 424 chr3R 31352884 31352901 chr3R 31352979 31352996 4 95 2.0 1.0 1.5 1.6 112 chr3R 31352884 intron CG34347 + chr3R 31352940 intron CG34347 + chr3R 31352996 intron CG34347 + chr3R_4_31350001 chr3R_31350001 RAL-313 425 chr3R 31413098 31413118 chr3R 31418298 31418318 copia 5 5200 1.5 0.0 0.8 2.8 5220 chr3R 31413098 intron Gprk2 + chr3R 31415708 intron Gprk2 + chr3R 31418318 intron Gprk2 + chr3R_5_31415001 chr3R_31415001 RAL-313 426 chr3R 31426906 31426913 chr3R 31426998 31427005 5 92 0.0 0.5 0.2 4.2 99 chr3R 31426906 intron Gprk2 + chr3R 31426956 intron Gprk2 + chr3R 31427005 intron Gprk2 + chr3R_5_31425001 chr3R_31425001 RAL-313 427 chr3R 31435366 31435388 chr3R 31435518 31435539 4 152 0.0 1.0 0.5 2.7 173 chr3R 31435366 intron Gprk2 + chr3R 31435452 intron Gprk2 + chr3R 31435539 intron Gprk2 + chr3R_4_31435001 chr3R_31435001 RAL-313 428 chr3R 31538498 31538518 chr3R 31538576 31538596 5 78 2.5 0.5 1.5 2.0 98 chr3R 31538498 intergenic not near genes chr3R 31538547 intergenic not near genes chr3R 31538596 intergenic not near genes chr3R_5_31535001 chr3R_31535001 RAL-313 429 chr3R 31930918 31930932 chr3R 31931017 31931030 4 99 0.5 3.5 2.0 1.3 112 chr3R 31930918 intron heph - chr3R 31930974 intron heph - chr3R 31931030 intron heph - chr3R_4_31930001 chr3R_31930001 RAL-313 430 chr3R 31997990 31998025 chr3R 32005460 32005495 blood 6 7470 0.0 1.0 0.5 4.0 7505 chr3R 31997990 intron heph - chr3R 32001742 intron heph - chr3R 32005495 intron heph - chr3R_6_32000001 chr3R_32000001 RAL-313 431 chr4 76495 76513 chr4 81938 81956 I-element 4 5443 0.0 0.5 0.2 3.3 5461 chr4 76495 intron pan + chr4 79226 intron pan + chr4 81956 intron pan + chr4_4_75001 chr4_75001 RAL-313 432 chr4 671609 671615 chr4 680192 680198 Tirant 4 8583 2.5 0.0 1.2 1.8 8589 chr4 671609 intron CG11360 + chr4 675904 intron CG11360 + chr4 680198 intron CG11360 + chr4_4_675001 chr4_675001 RAL-313 433 chr4 896792 896817 chr4 896869 896895 4 77 2.0 1.0 1.5 1.6 103 chr4 896792 intron unc-13 - chr4 896844 intron unc-13 - chr4 896895 intron unc-13 - chr4_4_895001 chr4_895001 RAL-313 434 chrX 827599 827620 chrX 835391 835412 roo 5 7791 0.5 0.0 0.2 4.2 7813 chrX 827599 intron CG43867 - chrX 831506 intron CG43867 - chrX 835412 intron CG43867 - chrX_5_830001 chrX_830001 RAL-313 435 chrX 906703 906734 chrX 908492 908523 S-element 6 1789 1.0 2.0 1.5 2.4 1820 chrX 906703 intron CG43867 - chrX 907613 intron CG43867 - chrX 908523 intron CG43867 - chrX_6_905001 chrX_905001 RAL-313 436 chrX 1185561 1185590 chrX 1185640 1185669 7 79 0.0 0.0 0.0 7.0 108 chrX 1185561 intron CG14626 + chrX 1185615 intron CG14626 + chrX 1185669 intron CG14626 + chrX_7_1185001 chrX_1185001 RAL-313 437 chrX 1428605 1428621 chrX 1428691 1428707 6 86 0.0 1.0 0.5 4.0 102 chrX 1428605 intron futsch + chrX 1428656 intron futsch + chrX 1428707 intron futsch + chrX_6_1425001 chrX_1425001 RAL-313 438 chrX 2841297 2841309 chrX 2841387 2841399 6 90 0.0 0.0 0.0 6.0 102 chrX 2841297 intron kirre + chrX 2841348 intron kirre + chrX 2841399 intron kirre + chrX_6_2840001 chrX_2840001 RAL-313 439 chrX 2844911 2844926 chrX 2852321 2852336 mdg1 5 7410 0.0 1.0 0.5 3.3 7425 chrX 2844911 intron kirre + chrX 2848624 intron kirre + chrX 2852336 intron kirre + chrX_5_2845001 chrX_2845001 RAL-313 440 chrX 3526695 3526722 chrX 3526821 3526848 7 125 1.0 0.0 0.5 4.7 153 chrX 3526695 intron CG32791 - chrX 3526772 intron CG32791 - chrX 3526848 intron CG32791 - chrX_7_3525001 chrX_3525001 RAL-313 441 chrX 4047466 4047494 chrX 4047579 4047607 7 113 1.5 1.5 1.5 2.8 141 chrX 4047466 intergenic CR45482 - chrX 4047536 intergenic CR45482 - chrX 4047607 3` UTR CR45482 - chrX_7_4045001 chrX_4045001 RAL-313 442 chrX 4229981 4229993 chrX 4230097 4230109 4 116 0.5 0.0 0.2 3.3 128 chrX 4229981 intergenic not near genes chrX 4230045 intergenic not near genes chrX 4230109 intergenic not near genes chrX_4_4230001 chrX_4230001 RAL-313 443 chrX 6002189 6002204 chrX 6002265 6002280 4 76 0.0 1.0 0.5 2.7 91 chrX 6002189 intron CR44498 + chrX 6002234 intron CR44498 + chrX 6002280 intron CR44498 + chrX_4_6000001 chrX_6000001 RAL-313 444 chrX 6115893 6115922 chrX 6116030 6116059 7 137 0.0 0.0 0.0 7.0 166 chrX 6115893 intron Ca-alpha1T - chrX 6115976 intron Ca-alpha1T - chrX 6116059 intron Ca-alpha1T - chrX_7_6115001 chrX_6115001 RAL-313 445 chrX 6392873 6392894 chrX 6397638 6397659 Doc 7 4765 0.5 1.0 0.8 3.9 4786 chrX 6392873 intergenic not near genes chrX 6395266 intergenic not near genes chrX 6397659 intergenic not near genes chrX_7_6395001 chrX_6395001 RAL-313 446 chrX 6539916 6539947 chrX 6540018 6540049 6 102 0.5 0.0 0.2 5.0 133 chrX 6539916 intergenic not near genes chrX 6539982 intergenic not near genes chrX 6540049 intergenic not near genes chrX_6_6535001 chrX_6535001 RAL-313 447 chrX 6897577 6897579 chrX 6897654 6897657 4 78 0.5 1.5 1.0 2.0 80 chrX 6897577 intergenic not near genes chrX 6897617 intergenic not near genes chrX 6897657 intergenic not near genes chrX_4_6895001 chrX_6895001 RAL-313 448 chrX 8305193 8305212 chrX 8305274 8305291 4 80 0.0 0.0 0.0 4.0 98 chrX 8305193 intron nAChRalpha3 - chrX 8305242 intron nAChRalpha3 - chrX 8305291 intron nAChRalpha3 - chrX_4_8305001 chrX_8305001 RAL-313 449 chrX 8378249 8378260 chrX 8378332 8378342 4 83 1.0 0.5 0.8 2.2 93 chrX 8378249 intergenic not near genes chrX 8378296 intergenic not near genes chrX 8378342 intergenic not near genes chrX_4_8375001 chrX_8375001 RAL-313 450 chrX 8922336 8922359 chrX 8922768 8922793 jockey 6 434 0.5 1.5 1.0 3.0 457 chrX 8922336 intron rdgA + chrX 8922564 intron rdgA + chrX 8922793 intron rdgA + chrX_6_8920001 chrX_8920001 RAL-313 451 chrX 9508146 9508158 chrX 9509664 9509676 jockey 4 1518 1.0 1.5 1.2 1.8 1530 chrX 9508146 intron CG32700 - chrX 9508911 intron CG32700 - chrX 9509676 intron CG32700 - chrX_4_9505001 chrX_9505001 RAL-313 452 chrX 10666443 10666460 chrX 10666610 10666627 4 167 1.5 0.0 0.8 2.2 184 chrX 10666443 intron X11Lbeta + chrX 10666535 intron X11Lbeta + chrX 10666627 intron X11Lbeta + chrX_4_10665001 chrX_10665001 RAL-313 453 chrX 11633424 11633441 chrX 11640478 11640495 297 5 7054 1.0 0.5 0.8 2.8 7071 chrX 11633424 intron Ptp10D + chrX 11636960 intron Ptp10D + chrX 11640495 intron Ptp10D + chrX_5_11635001 chrX_11635001 RAL-313 454 chrX 12465476 12465498 chrX 12465552 12465574 5 76 0.0 0.0 0.0 5.0 98 chrX 12465476 exon CG42258 + chrX 12465525 intron CG42258 + chrX 12465574 intron CG42258 + chrX_5_12465001 chrX_12465001 RAL-313 455 chrX 13374846 13374870 chrX 13374926 13374950 6 80 0.0 0.0 0.0 6.0 104 chrX 13374846 intron CG1640 + chrX 13374898 intron CG1640 + chrX 13374950 intron CG1640 + chrX_6_13370001 chrX_13370001 RAL-313 456 chrX 13546993 13547012 chrX 13547087 13547106 4 94 0.0 0.0 0.0 4.0 113 chrX 13546993 intergenic not near genes chrX 13547050 intergenic not near genes chrX 13547106 intergenic not near genes chrX_4_13545001 chrX_13545001 RAL-313 457 chrX 13563419 13563453 chrX 13563499 13563533 4 80 0.0 0.0 0.0 4.0 114 chrX 13563419 intergenic CG32633 +,Tango13 + chrX 13563476 intergenic CG32633 +,Tango13 + chrX 13563533 intergenic CG32633 +,Tango13 + chrX_4_13560001 chrX_13560001 RAL-313 458 chrX 14778028 14778040 chrX 14782824 14782837 Doc 4 4797 1.5 2.5 2.0 1.3 4809 chrX 14778028 intergenic CG5347 + chrX 14780432 intergenic not near genes chrX 14782837 intergenic Ag5r2 - chrX_4_14780001 chrX_14780001 RAL-313 459 chrX 16492646 16492653 chrX 16498223 16498229 mdg3 4 5576 1.5 1.0 1.2 1.8 5583 chrX 16492646 intron para - chrX 16495438 intron para - chrX 16498229 intron para - chrX_4_16495001 chrX_16495001 RAL-313 460 chrX 17685460 17685473 chrX 17685543 17685556 4 82 0.0 0.0 0.0 4.0 96 chrX 17685460 intron chas - chrX 17685508 intron chas - chrX 17685556 intron chas - chrX_4_17685001 chrX_17685001 RAL-313 461 chrX 18194071 18194100 chrX 18194606 18194635 BS 5 535 1.5 1.0 1.2 2.3 564 chrX 18194071 intron Frq2 + chrX 18194353 intron Frq2 + chrX 18194635 intron Frq2 + chrX_5_18190001 chrX_18190001 RAL-313 462 chrX 13057299 13057300 chrX 19242813 19242814 10 6185514 3.5 1.5 2.5 2.9 6185515 chrX 13057299 intron rad + chrX 16150056 intergenic not near genes chrX 19242814 intergenic not near genes chrX_10_16150001 chrX_16150001 RAL-313 463 chrX 19380165 19380174 chrX 19380406 19380415 pogo 5 241 2.0 1.0 1.5 2.0 250 chrX 19380165 intron kek5 + chrX 19380290 intron kek5 + chrX 19380415 intron kek5 + chrX_5_19380001 chrX_19380001 RAL-313 464 chrX 19576559 19576584 chrX 19576635 19576662 5 78 0.0 0.0 0.0 5.0 103 chrX 19576559 intron Tao - chrX 19576610 intron Tao - chrX 19576662 intron Tao - chrX_5_19575001 chrX_19575001 RAL-313 465 chrX 19881474 19881484 chrX 19881555 19881565 5 81 0.0 1.5 0.8 2.8 91 chrX 19881474 intron Hers + chrX 19881520 intron Hers + chrX 19881565 intron Hers + chrX_5_19880001 chrX_19880001 RAL-313 466 chrX 20069270 20069296 chrX 20069403 20069428 5 133 0.0 0.5 0.2 4.2 158 chrX 20069270 intergenic not near genes chrX 20069349 intergenic not near genes chrX 20069428 intergenic not near genes chrX_5_20065001 chrX_20065001 RAL-313 467 chrX 20468028 20468032 chrX 20468115 20468120 6 88 0.0 0.0 0.0 6.0 92 chrX 20468028 intron GstT3 + chrX 20468074 intron GstT3 + chrX 20468120 intron GstT3 + chrX_6_20465001 chrX_20465001 RAL-313 468 chrX 20483694 20483715 chrX 20483772 20483793 5 78 0.5 0.0 0.2 4.2 99 chrX 20483694 intron RhoGAP19D - chrX 20483744 intron RhoGAP19D - chrX 20483793 intron RhoGAP19D - chrX_5_20480001 chrX_20480001 RAL-313 469 chrX 20504139 20504151 chrX 20505660 20505672 transib2 4 1521 0.5 1.0 0.8 2.2 1533 chrX 20504139 intron RhoGAP19D - chrX 20504906 intron RhoGAP19D - chrX 20505672 intron RhoGAP19D - chrX_4_20500001 chrX_20500001 RAL-313 470 chrX 20940722 20940746 chrX 20942191 20942215 hobo 5 1469 0.5 2.0 1.2 2.3 1493 chrX 20940722 intergenic not near genes chrX 20941468 intergenic not near genes chrX 20942215 intergenic not near genes chrX_5_20940001 chrX_20940001 RAL-313 471 chrX 21086131 21086141 chrX 21087160 21087170 jockey 4 1029 0.5 0.5 0.5 2.7 1039 chrX 21086131 intergenic not near genes chrX 21086650 intergenic not near genes chrX 21087170 intergenic not near genes chrX_4_21085001 chrX_21085001 RAL-313 472 chrX 21088046 21088070 chrX 21088178 21088202 5 132 0.5 0.0 0.2 4.2 156 chrX 21088046 intergenic not near genes chrX 21088124 intergenic not near genes chrX 21088202 intergenic not near genes chrX_5_21085001 chrX_21085001 RAL-313 473 chrX 21089147 21089177 chrX 21089241 21089271 4 94 0.0 0.0 0.0 4.0 124 chrX 21089147 intergenic not near genes chrX 21089209 intergenic not near genes chrX 21089271 intergenic not near genes chrX_4_21085001 chrX_21085001 RAL-313 474 chrX 21419722 21419735 chrX 21419811 21419824 7 89 0.0 2.5 1.2 3.2 102 chrX 21419722 intergenic not near genes chrX 21419773 intergenic not near genes chrX 21419824 intergenic not near genes chrX_7_21415001 chrX_21415001 RAL-313 475 chrY 3664991 3665016 chrY 3665095 3665120 5 104 0.5 0.5 0.5 3.3 129 chrY 3664991 intergenic CG40948 + chrY 3665056 intergenic not near genes chrY 3665120 intergenic not near genes chrY_5_3665001 chrY_3665001 RAL-313