SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 47458 47482 chr2L 52563 52582 jockey 8 5100 4.0 3.5 3.8 1.7 5124 chr2L 47458 intron Cda5 - chr2L 50020 intron Cda5 - chr2L 52582 intron Cda5 - chr2L_8_50001 chr2L_50001 RAL-310 2 chr2L 62026 62037 chr2L 62283 62312 6 266 16.0 13.5 14.8 0.4 286 chr2L 62026 intron Cda5 - chr2L 62169 intron Cda5 - chr2L 62312 intron Cda5 - chr2L_6_60001 chr2L_60001 RAL-310 3 chr2L 79837 79857 chr2L 80181 80200 9 342 3.5 3.0 3.2 2.1 363 chr2L 79837 intergenic not near genes chr2L 80018 intergenic not near genes chr2L 80200 intergenic not near genes chr2L_9_80001 chr2L_80001 RAL-310 4 chr2L 89724 89746 chr2L 89795 89806 6 72 2.0 1.5 1.8 2.1 82 chr2L 89724 intergenic not near genes chr2L 89765 intergenic not near genes chr2L 89806 intergenic not near genes chr2L_6_85001 chr2L_85001 RAL-310 5 chr2L 297684 297715 chr2L 297784 297815 10 97 1.0 2.5 1.8 3.6 131 chr2L 297684 intergenic Pi3K21B +,Hop + chr2L 297750 intergenic Pi3K21B +,Hop + chr2L 297815 intergenic Pi3K21B +,Hop + chr2L_10_295001 chr2L_295001 RAL-310 6 chr2L 558828 558846 chr2L 559063 559082 10 234 3.5 2.5 3.0 2.5 254 chr2L 558828 intron rempA - chr2L 558955 intron rempA - chr2L 559082 intron rempA - chr2L_10_555001 chr2L_555001 RAL-310 7 chr2L 666281 666303 chr2L 666357 666378 9 74 0.5 0.5 0.5 6.0 97 chr2L 666281 intron ds - chr2L 666330 intron ds - chr2L 666378 intron ds - chr2L_9_665001 chr2L_665001 RAL-310 8 chr2L 686916 686947 chr2L 695956 695986 roo 8 9039 1.5 1.0 1.2 3.6 9070 chr2L 686916 intron ds - chr2L 691451 intron ds - chr2L 695986 intron ds - chr2L_8_690001 chr2L_690001 RAL-310 9 chr2L 736879 736900 chr2L 736984 737005 8 105 1.5 2.0 1.8 2.9 126 chr2L 736879 intergenic Eaat2 - chr2L 736942 intergenic Eaat2 - chr2L 737005 intergenic Eaat2 - chr2L_8_735001 chr2L_735001 RAL-310 10 chr2L 770463 770480 chr2L 772244 772258 Bari1 6 1779 3.5 3.5 3.5 1.3 1795 chr2L 770463 intergenic not near genes chr2L 771360 intergenic not near genes chr2L 772258 intergenic CR44614 + chr2L_6_770001 chr2L_770001 RAL-310 11 chr2L 844939 844959 chr2L 845026 845041 7 84 2.0 3.0 2.5 2.0 102 chr2L 844939 intron drongo - chr2L 844990 intron drongo - chr2L 845041 intron drongo - chr2L_7_840001 chr2L_840001 RAL-310 12 chr2L 877851 877863 chr2L 877928 877944 9 80 4.0 3.5 3.8 1.9 93 chr2L 877851 3` UTR,exon CG15824 -,ninaA + chr2L 877898 3` UTR,intron CG15824 -,ninaA + chr2L 877944 3` UTR,intron CG15824 -,ninaA + chr2L_9_875001 chr2L_875001 RAL-310 13 chr2L 964557 964570 chr2L 964641 964653 4 83 3.0 2.5 2.8 1.1 96 chr2L 964557 intergenic not near genes chr2L 964605 intergenic not near genes chr2L 964653 intergenic not near genes chr2L_4_960001 chr2L_960001 RAL-310 14 chr2L 976751 976775 chr2L 976828 976852 5 77 2.5 0.0 1.2 2.3 101 chr2L 976751 intergenic not near genes chr2L 976802 intergenic not near genes chr2L 976852 intergenic not near genes chr2L_5_975001 chr2L_975001 RAL-310 15 chr2L 1035557 1035594 chr2L 1035634 1035671 11 75 1.0 1.5 1.2 5.0 114 chr2L 1035557 intron IA-2 - chr2L 1035614 intron IA-2 - chr2L 1035671 intron IA-2 - chr2L_11_1035001 chr2L_1035001 RAL-310 16 chr2L 1041354 1041381 chr2L 1041442 1041462 5 87 1.5 1.5 1.5 2.0 108 chr2L 1041354 intron IA-2 - chr2L 1041408 intron IA-2 - chr2L 1041462 intron IA-2 - chr2L_5_1040001 chr2L_1040001 RAL-310 17 chr2L 1066098 1066126 chr2L 1066174 1066174 11 76 1.0 2.5 1.8 3.9 76 chr2L 1066098 intron S - chr2L 1066136 intron S - chr2L 1066174 intron S - chr2L_11_1065001 chr2L_1065001 RAL-310 18 chr2L 1126679 1126705 chr2L 1126754 1126781 12 73 2.5 6.5 4.5 2.2 102 chr2L 1126679 intron Pino - chr2L 1126730 intron Pino - chr2L 1126781 intron Pino - chr2L_12_1125001 chr2L_1125001 RAL-310 19 chr2L 1164245 1164276 chr2L 1164331 1164361 5 86 1.0 1.0 1.0 2.5 116 chr2L 1164245 intergenic IntS14 +,CG5080 - chr2L 1164303 intergenic IntS14 +,CG5080 - chr2L 1164361 intergenic IntS14 +,CG5080 - chr2L_5_1160001 chr2L_1160001 RAL-310 20 chr2L 1220133 1220160 chr2L 1227599 1227626 blood 9 7466 3.5 3.0 3.2 2.1 7493 chr2L 1220133 intron CG42329 + chr2L 1223880 intron CG42329 + chr2L 1227626 intron CG42329 + chr2L_9_1220001 chr2L_1220001 RAL-310 21 chr2L 1322026 1322052 chr2L 1322115 1322121 4 80 2.0 2.5 2.2 1.2 95 chr2L 1322026 intergenic not near genes chr2L 1322074 intergenic not near genes chr2L 1322121 intergenic not near genes chr2L_4_1320001 chr2L_1320001 RAL-310 22 chr2L 1331071 1331091 chr2L 1331148 1331165 5 75 0.5 1.0 0.8 2.8 94 chr2L 1331071 intergenic not near genes chr2L 1331118 intergenic not near genes chr2L 1331165 intergenic not near genes chr2L_5_1330001 chr2L_1330001 RAL-310 23 chr2L 1570697 1570720 chr2L 1573569 1573591 F-element 5 2872 2.5 3.0 2.8 1.3 2894 chr2L 1570697 intron haf + chr2L 1572144 intron haf + chr2L 1573591 intron haf + chr2L_5_1570001 chr2L_1570001 RAL-310 24 chr2L 1591880 1591890 chr2L 1591946 1591974 5 73 2.5 2.0 2.2 1.6 94 chr2L 1591880 intron haf + chr2L 1591927 intron haf + chr2L 1591974 intron haf + chr2L_5_1590001 chr2L_1590001 RAL-310 25 chr2L 1618658 1618675 chr2L 1618734 1618741 5 72 3.0 4.0 3.5 1.1 83 chr2L 1618658 3` UTR CR44603 - chr2L 1618700 3` UTR CR44603 - chr2L 1618741 3` UTR CR44603 - chr2L_5_1615001 chr2L_1615001 RAL-310 26 chr2L 1620275 1620295 chr2L 1620351 1620371 6 74 0.5 1.0 0.8 3.3 96 chr2L 1620275 3` UTR CR44603 - chr2L 1620323 3` UTR CR44603 - chr2L 1620371 3` UTR CR44603 - chr2L_6_1620001 chr2L_1620001 RAL-310 27 chr2L 1635398 1635430 chr2L 1635534 1635566 4 136 0.0 2.0 1.0 2.0 168 chr2L 1635398 intergenic not near genes chr2L 1635482 intergenic not near genes chr2L 1635566 intergenic not near genes chr2L_4_1635001 chr2L_1635001 RAL-310 28 chr2L 1658275 1658298 chr2L 1658536 1658557 5 261 3.5 0.0 1.8 1.8 282 chr2L 1658275 intron chinmo + chr2L 1658416 intron chinmo + chr2L 1658557 intron chinmo + chr2L_5_1655001 chr2L_1655001 RAL-310 29 chr2L 1711363 1711370 chr2L 1711681 1711693 mdg3 4 322 4.0 4.5 4.2 0.8 330 chr2L 1711363 3` UTR,3` UTR mRpL48 +,frtz - chr2L 1711528 3` UTR frtz - chr2L 1711693 3` UTR frtz - chr2L_4_1710001 chr2L_1710001 RAL-310 30 chr2L 1711377 1711385 chr2L 1711680 1711709 mdg3 4 311 2.0 4.5 3.2 1.0 332 chr2L 1711377 3` UTR,3` UTR mRpL48 +,frtz - chr2L 1711543 3` UTR frtz - chr2L 1711709 3` UTR frtz - chr2L_4_1710001 chr2L_1710001 RAL-310 31 chr2L 1721833 1721855 chr2L 1721917 1721939 4 83 0.5 2.0 1.2 1.8 106 chr2L 1721833 intron Rim2 - chr2L 1721886 intron Rim2 - chr2L 1721939 intron Rim2 - chr2L_4_1720001 chr2L_1720001 RAL-310 32 chr2L 1785673 1785697 chr2L 1785763 1785788 14 89 5.5 3.0 4.2 2.7 115 chr2L 1785673 intergenic Gr22e + chr2L 1785730 intergenic Gr22e + chr2L 1785788 intergenic not near genes chr2L_14_1785001 chr2L_1785001 RAL-310 33 chr2L 1828402 1828434 chr2L 1828485 1828518 11 82 3.0 3.0 3.0 2.8 116 chr2L 1828402 intergenic not near genes chr2L 1828460 intergenic not near genes chr2L 1828518 intergenic not near genes chr2L_11_1825001 chr2L_1825001 RAL-310 34 chr2L 1924422 1924451 chr2L 1924502 1924533 5 81 0.5 0.0 0.2 4.2 111 chr2L 1924422 intron CG7337 + chr2L 1924478 intron CG7337 + chr2L 1924533 intron CG7337 + chr2L_5_1920001 chr2L_1920001 RAL-310 35 chr2L 2016151 2016159 chr2L 2016224 2016239 5 77 0.5 2.5 1.5 2.0 88 chr2L 2016151 intron CG4238 + chr2L 2016195 intron CG4238 + chr2L 2016239 intron CG4238 + chr2L_5_2015001 chr2L_2015001 RAL-310 36 chr2L 2068807 2068832 chr2L 2068990 2069016 12 182 3.5 1.0 2.2 3.8 209 chr2L 2068807 intron dpr3 - chr2L 2068912 intron dpr3 - chr2L 2069016 intron dpr3 - chr2L_12_2065001 chr2L_2065001 RAL-310 37 chr2L 2100383 2100401 chr2L 2109528 2109549 roo 11 9149 2.0 2.5 2.2 3.4 9166 chr2L 2100383 intron dpr3 - chr2L 2104966 intron dpr3 - chr2L 2109549 intron dpr3 - chr2L_11_2100001 chr2L_2100001 RAL-310 38 chr2L 2112122 2112144 chr2L 2119773 2119806 opus 5 7658 2.5 4.0 3.2 1.2 7684 chr2L 2112122 intergenic not near genes chr2L 2115964 intergenic not near genes chr2L 2119806 intergenic not near genes chr2L_5_2115001 chr2L_2115001 RAL-310 39 chr2L 2229073 2229098 chr2L 2229228 2229252 5 155 2.5 2.0 2.2 1.6 179 chr2L 2229073 intron rti + chr2L 2229162 intron rti + chr2L 2229252 intron rti + chr2L_5_2225001 chr2L_2225001 RAL-310 40 chr2L 2260802 2260839 chr2L 2260888 2260909 13 85 1.0 1.5 1.2 5.9 107 chr2L 2260802 intergenic not near genes chr2L 2260856 intergenic not near genes chr2L 2260909 intergenic not near genes chr2L_13_2260001 chr2L_2260001 RAL-310 41 chr2L 2316476 2316501 chr2L 2316561 2316590 6 84 0.5 4.5 2.5 1.7 114 chr2L 2316476 intron,intron CG9967 -,eys + chr2L 2316533 intron,intron CG9967 -,eys + chr2L 2316590 intron,intron CG9967 -,eys + chr2L_6_2315001 chr2L_2315001 RAL-310 42 chr2L 2587815 2587846 chr2L 2587894 2587925 7 75 1.5 3.0 2.2 2.2 110 chr2L 2587815 intergenic not near genes chr2L 2587870 intergenic not near genes chr2L 2587925 intergenic not near genes chr2L_7_2585001 chr2L_2585001 RAL-310 43 chr2L 2618044 2618066 chr2L 2618123 2618125 6 73 3.0 1.5 2.2 1.9 81 chr2L 2618044 intergenic not near genes chr2L 2618084 intergenic not near genes chr2L 2618125 intergenic not near genes chr2L_6_2615001 chr2L_2615001 RAL-310 44 chr2L 2667638 2667654 chr2L 2667716 2667718 4 72 1.5 3.0 2.2 1.2 80 chr2L 2667638 intergenic not near genes chr2L 2667678 intergenic not near genes chr2L 2667718 intergenic not near genes chr2L_4_2665001 chr2L_2665001 RAL-310 45 chr2L 2698865 2698895 chr2L 2698952 2698981 8 87 2.5 2.0 2.2 2.5 116 chr2L 2698865 intron CG31690 + chr2L 2698923 intron CG31690 + chr2L 2698981 intron CG31690 + chr2L_8_2695001 chr2L_2695001 RAL-310 46 chr2L 2895703 2895715 chr2L 2895789 2895801 4 85 2.0 1.5 1.8 1.4 98 chr2L 2895703 intron lilli + chr2L 2895752 intron lilli + chr2L 2895801 intron lilli + chr2L_4_2895001 chr2L_2895001 RAL-310 47 chr2L 2909900 2909931 chr2L 2909984 2910002 9 81 2.0 2.5 2.2 2.8 102 chr2L 2909900 intron lilli + chr2L 2909951 intron lilli + chr2L 2910002 intron lilli + chr2L_9_2905001 chr2L_2905001 RAL-310 48 chr2L 3001608 3001632 chr2L 3001688 3001715 7 82 4.0 3.0 3.5 1.6 107 chr2L 3001608 intron CG17265 + chr2L 3001662 intron CG17265 + chr2L 3001715 intron CG17265 + chr2L_7_3000001 chr2L_3000001 RAL-310 49 chr2L 3073037 3073059 chr2L 3078239 3078262 copia 14 5202 2.5 2.5 2.5 4.0 5225 chr2L 3073037 intron toc - chr2L 3075650 intron toc - chr2L 3078262 intron toc - chr2L_14_3075001 chr2L_3075001 RAL-310 50 chr2L 3108867 3108897 chr2L 3108944 3108974 5 77 1.5 2.5 2.0 1.7 107 chr2L 3108867 intron toc - chr2L 3108920 intron toc - chr2L 3108974 intron toc - chr2L_5_3105001 chr2L_3105001 RAL-310 51 chr2L 3523032 3523054 chr2L 3523145 3523166 5 111 0.5 3.0 1.8 1.8 134 chr2L 3523032 exon Sr-CIV - chr2L 3523099 intron Sr-CIV - chr2L 3523166 exon Sr-CIV - chr2L_5_3520001 chr2L_3520001 RAL-310 52 chr2L 3634106 3634135 chr2L 3634188 3634217 7 82 1.5 2.5 2.0 2.3 111 chr2L 3634106 intron for - chr2L 3634162 intron for - chr2L 3634217 intron for - chr2L_7_3630001 chr2L_3630001 RAL-310 53 chr2L 3663314 3663340 chr2L 3663392 3663419 5 79 1.5 2.5 2.0 1.7 105 chr2L 3663314 intron CG34340 + chr2L 3663366 intron CG34340 + chr2L 3663419 intron CG34340 + chr2L_5_3660001 chr2L_3660001 RAL-310 54 chr2L 3665100 3665127 chr2L 3665184 3665203 5 79 2.5 2.5 2.5 1.4 103 chr2L 3665100 intron CG34340 + chr2L 3665152 intron CG34340 + chr2L 3665203 intron CG34340 + chr2L_5_3665001 chr2L_3665001 RAL-310 55 chr2L 3783386 3783392 chr2L 10185897 10185904 4 6402512 4.0 0.0 2.0 1.3 6402518 chr2L 3783386 3` UTR bowl + chr2L 6984645 exon uif - chr2L 10185904 intron Sur - chr2L_4_6980001 chr2L_6980001 RAL-310 56 chr2L 3785605 3785619 chr2L 3786378 3786384 5 771 3.5 7.5 5.5 0.8 779 chr2L 3785605 3` UTR CG31960 + chr2L 3785994 exon CG31958 + chr2L 3786384 intergenic CG31958 + chr2L_5_3785001 chr2L_3785001 RAL-310 57 chr2L 3784699 3784721 chr2L 3786372 3786383 4 1664 16.0 7.5 11.8 0.3 1684 chr2L 3784699 intergenic CG31960 + chr2L 3785541 3` UTR CG31960 + chr2L 3786383 intergenic CG31958 + chr2L_4_3785001 chr2L_3785001 RAL-310 58 chr2L 3906037 3906068 chr2L 3906183 3906214 6 142 0.5 3.0 1.8 2.1 177 chr2L 3906037 intron fred - chr2L 3906126 intron fred - chr2L 3906214 intron fred - chr2L_6_3905001 chr2L_3905001 RAL-310 59 chr2L 4066045 4066061 chr2L 4068870 4068886 Juan 6 2825 3.0 3.5 3.2 1.4 2841 chr2L 4066045 intron ed + chr2L 4067466 intron ed + chr2L 4068886 intron ed + chr2L_6_4065001 chr2L_4065001 RAL-310 60 chr2L 4166393 4166411 chr2L 4166476 4166494 6 82 2.5 5.0 3.8 1.2 101 chr2L 4166393 intergenic Or24a - chr2L 4166444 intergenic Or24a - chr2L 4166494 intergenic Or24a - chr2L_6_4165001 chr2L_4165001 RAL-310 61 chr2L 4297479 4297488 chr2L 4297559 4297565 5 79 7.0 3.5 5.2 0.8 86 chr2L 4297479 intron tutl + chr2L 4297522 intron tutl + chr2L 4297565 intron tutl + chr2L_5_4295001 chr2L_4295001 RAL-310 62 chr2L 4368648 4368669 chr2L 4369348 4369369 6 699 3.5 3.5 3.5 1.3 721 chr2L 4368648 intron Traf4 + chr2L 4369008 intron Traf4 + chr2L 4369369 intron Traf4 + chr2L_6_4365001 chr2L_4365001 RAL-310 63 chr2L 4601702 4601737 chr2L 4609143 4609178 mdg1 9 7441 3.0 3.0 3.0 2.2 7476 chr2L 4601702 intron dp - chr2L 4605440 intron dp - chr2L 4609178 intron dp - chr2L_9_4605001 chr2L_4605001 RAL-310 64 chr2L 4729251 4729280 chr2L 4729633 4729661 4 383 1.5 4.0 2.8 1.1 410 chr2L 4729251 intergenic not near genes chr2L 4729456 intergenic not near genes chr2L 4729661 intergenic not near genes chr2L_4_4725001 chr2L_4725001 RAL-310 65 chr2L 4819495 4819508 chr2L 4819618 4819622 4 120 3.5 4.0 3.8 0.8 127 chr2L 4819495 intergenic not near genes chr2L 4819558 intergenic not near genes chr2L 4819622 intergenic not near genes chr2L_4_4815001 chr2L_4815001 RAL-310 66 chr2L 4953523 4953541 chr2L 4953764 4953782 pogo 4 241 3.5 2.5 3.0 1.0 259 chr2L 4953523 intergenic Jon25Bii - chr2L 4953652 intergenic not near genes chr2L 4953782 intergenic Jon25Bi - chr2L_4_4950001 chr2L_4950001 RAL-310 67 chr2L 5057572 5057605 chr2L 5057915 5057948 10 342 2.0 3.5 2.8 2.6 376 chr2L 5057572 exon CG31918 - chr2L 5057760 exon CG31918 - chr2L 5057948 exon CG31918 - chr2L_10_5055001 chr2L_5055001 RAL-310 68 chr2L 5242936 5242936 chr2L 16217660 16217660 4 10974724 15.0 22.0 18.5 0.2 10974724 chr2L 5242936 intron tkv - chr2L 10730298 3` UTR,5` UTR CG6443 +,CG17118 + chr2L 16217660 intergenic not near genes chr2L_4_10730001 chr2L_10730001 RAL-310 69 chr2L 5448009 5448023 chr2L 5448093 5448103 4 83 0.0 2.5 1.2 1.8 94 chr2L 5448009 intergenic not near genes chr2L 5448056 intergenic not near genes chr2L 5448103 intergenic not near genes chr2L_4_5445001 chr2L_5445001 RAL-310 70 chr2L 5508542 5508551 chr2L 5508617 5508627 5 76 2.5 2.5 2.5 1.4 85 chr2L 5508542 intergenic not near genes chr2L 5508584 intergenic not near genes chr2L 5508627 intergenic not near genes chr2L_5_5505001 chr2L_5505001 RAL-310 71 chr2L 5593127 5593157 chr2L 5593232 5593263 5 106 0.5 0.5 0.5 3.3 136 chr2L 5593127 intergenic not near genes chr2L 5593195 intergenic not near genes chr2L 5593263 intergenic not near genes chr2L_5_5590001 chr2L_5590001 RAL-310 72 chr2L 5634174 5634205 chr2L 5634265 5634296 8 87 3.0 3.0 3.0 2.0 122 chr2L 5634174 intron CG31646 - chr2L 5634235 intron CG31646 - chr2L 5634296 intron CG31646 - chr2L_8_5630001 chr2L_5630001 RAL-310 73 chr2L 5789260 5789283 chr2L 5789357 5789380 5 96 1.0 5.0 3.0 1.2 120 chr2L 5789260 intron CG9171 - chr2L 5789320 intron CG9171 - chr2L 5789380 intron CG9171 - chr2L_5_5785001 chr2L_5785001 RAL-310 74 chr2L 5827708 5827734 chr2L 5836716 5836720 roo 6 9004 4.0 7.0 5.5 0.9 9012 chr2L 5827708 intron TrissinR + chr2L 5832214 intron TrissinR + chr2L 5836720 intron TrissinR + chr2L_6_5830001 chr2L_5830001 RAL-310 75 chr2L 5852517 5852536 chr2L 5852627 5852643 5 106 1.0 2.0 1.5 2.0 126 chr2L 5852517 intron TrissinR + chr2L 5852580 intron TrissinR + chr2L 5852643 intron TrissinR + chr2L_5_5850001 chr2L_5850001 RAL-310 76 chr2L 5897595 5897622 chr2L 5897678 5897692 12 80 2.5 5.5 4.0 2.4 97 chr2L 5897595 intergenic not near genes chr2L 5897644 intergenic not near genes chr2L 5897692 intergenic not near genes chr2L_12_5895001 chr2L_5895001 RAL-310 77 chr2L 6200015 6200024 chr2L 6200165 6200175 6 151 1.0 1.0 1.0 3.0 160 chr2L 6200015 intron CG34380 + chr2L 6200095 intron CG34380 + chr2L 6200175 intron CG34380 + chr2L_6_6200001 chr2L_6200001 RAL-310 78 chr2L 6247766 6247780 chr2L 6247843 6247855 4 74 1.0 3.0 2.0 1.3 89 chr2L 6247766 intergenic not near genes chr2L 6247810 intergenic not near genes chr2L 6247855 intergenic not near genes chr2L_4_6245001 chr2L_6245001 RAL-310 79 chr2L 6380081 6380092 chr2L 6380158 6380173 7 80 2.5 4.0 3.2 1.7 92 chr2L 6380081 intron CG42368 - chr2L 6380127 intron CG42368 - chr2L 6380173 intron CG42368 - chr2L_7_6380001 chr2L_6380001 RAL-310 80 chr2L 6426858 6426883 chr2L 6445116 6445143 roo 7 18259 2.0 3.0 2.5 2.0 18285 chr2L 6426858 3` UTR CG9527 - chr2L 6436000 intron CG9527 - chr2L 6445143 exon CG9527 - chr2L_7_6435001 chr2L_6435001 RAL-310 81 chr2L 6724448 6724475 chr2L 6724527 6724555 6 80 1.5 0.0 0.8 3.3 107 chr2L 6724448 intron Liprin-alpha + chr2L 6724502 intron Liprin-alpha + chr2L 6724555 intron Liprin-alpha + chr2L_6_6720001 chr2L_6720001 RAL-310 82 chr2L 6876777 6876789 chr2L 6882967 6882979 diver 4 6190 9.5 3.0 6.2 0.6 6202 chr2L 6876777 intron Nlg2 + chr2L 6879878 intron Nlg2 + chr2L 6882979 intron Nlg2 + chr2L_4_6875001 chr2L_6875001 RAL-310 83 chr2L 7249621 7249646 chr2L 7249704 7249714 6 79 1.5 2.0 1.8 2.1 93 chr2L 7249621 intergenic Ndae1 - chr2L 7249668 intergenic Ndae1 - chr2L 7249714 intergenic Ndae1 - chr2L_6_7245001 chr2L_7245001 RAL-310 84 chr2L 7295998 7296024 chr2L 7296136 7296164 4 139 1.5 1.5 1.5 1.6 166 chr2L 7295998 intergenic not near genes chr2L 7296081 intergenic not near genes chr2L 7296164 intergenic not near genes chr2L_4_7295001 chr2L_7295001 RAL-310 85 chr2L 7325913 7325949 chr2L 7325998 7326033 4 83 0.5 2.5 1.5 1.6 120 chr2L 7325913 intergenic not near genes chr2L 7325973 intergenic not near genes chr2L 7326033 intergenic not near genes chr2L_4_7325001 chr2L_7325001 RAL-310 86 chr2L 7343323 7343359 chr2L 7350439 7350472 roo 8 7108 7.0 3.5 5.2 1.3 7149 chr2L 7343323 intron Wnt6 + chr2L 7346898 intron Wnt6 + chr2L 7350472 intron Wnt6 + chr2L_8_7345001 chr2L_7345001 RAL-310 87 chr2L 7436205 7436218 chr2L 7436292 7436304 4 87 0.0 0.0 0.0 4.0 99 chr2L 7436205 intergenic not near genes chr2L 7436254 intergenic not near genes chr2L 7436304 intergenic not near genes chr2L_4_7435001 chr2L_7435001 RAL-310 88 chr2L 7555219 7555232 chr2L 7555294 7555309 4 76 0.5 1.5 1.0 2.0 90 chr2L 7555219 intron RapGAP1 - chr2L 7555264 intron RapGAP1 - chr2L 7555309 intron RapGAP1 - chr2L_4_7555001 chr2L_7555001 RAL-310 89 chr2L 7922741 7922773 chr2L 7922822 7922854 4 79 1.0 2.0 1.5 1.6 113 chr2L 7922741 intron Snoo - chr2L 7922798 intron Snoo - chr2L 7922854 intron Snoo - chr2L_4_7920001 chr2L_7920001 RAL-310 90 chr2L 7959042 7959055 chr2L 7960451 7960466 pogo 5 1411 3.5 3.5 3.5 1.1 1424 chr2L 7959042 intron Snoo - chr2L 7959754 intron Snoo - chr2L 7960466 intron Snoo - chr2L_5_7955001 chr2L_7955001 RAL-310 91 chr2L 8013611 8013634 chr2L 8018815 8018835 copia 7 5203 2.0 0.0 1.0 3.5 5224 chr2L 8013611 intron Tg + chr2L 8016223 intron Tg + chr2L 8018835 intron Tg + chr2L_7_8015001 chr2L_8015001 RAL-310 92 chr2L 8044102 8044118 chr2L 8044181 8044197 5 79 4.0 2.5 3.2 1.2 95 chr2L 8044102 intron CG7466 + chr2L 8044150 intron CG7466 + chr2L 8044197 intron CG7466 + chr2L_5_8040001 chr2L_8040001 RAL-310 93 chr2L 8184925 8184953 chr2L 8185016 8185044 10 91 0.0 3.0 1.5 4.0 119 chr2L 8184925 intron Piezo + chr2L 8184984 intron Piezo + chr2L 8185044 intron Piezo + chr2L_10_8180001 chr2L_8180001 RAL-310 94 chr2L 8286316 8286329 chr2L 8286397 8286416 6 85 1.5 4.5 3.0 1.5 100 chr2L 8286316 intron Btk29A - chr2L 8286366 intron Btk29A - chr2L 8286416 intron Btk29A - chr2L_6_8285001 chr2L_8285001 RAL-310 95 chr2L 8345098 8345128 chr2L 8345180 8345210 7 82 3.0 3.5 3.2 1.7 112 chr2L 8345098 intergenic CR45371 - chr2L 8345154 intergenic CR45371 - chr2L 8345210 intergenic CR45371 - chr2L_7_8345001 chr2L_8345001 RAL-310 96 chr2L 8502676 8502680 chr2L 8502758 8502762 4 83 4.0 3.0 3.5 0.9 86 chr2L 8502676 intron Dh31 - chr2L 8502719 intron Dh31 - chr2L 8502762 intron Dh31 - chr2L_4_8500001 chr2L_8500001 RAL-310 97 chr2L 8723125 8723144 chr2L 8731497 8731521 Tirant 5 8376 3.0 4.0 3.5 1.1 8396 chr2L 8723125 intron raw - chr2L 8727323 intron raw - chr2L 8731521 intron raw - chr2L_5_8725001 chr2L_8725001 RAL-310 98 chr2L 8857994 8858014 chr2L 8858062 8858092 4 74 2.5 2.5 2.5 1.1 98 chr2L 8857994 intergenic not near genes chr2L 8858043 intergenic not near genes chr2L 8858092 intergenic not near genes chr2L_4_8855001 chr2L_8855001 RAL-310 99 chr2L 9297386 9297401 chr2L 9297458 9297466 7 73 4.0 3.5 3.8 1.5 80 chr2L 9297386 3` UTR Ggamma30A + chr2L 9297426 3` UTR Ggamma30A + chr2L 9297466 3` UTR Ggamma30A + chr2L_7_9295001 chr2L_9295001 RAL-310 100 chr2L 9393496 9393526 chr2L 9396463 9396492 jockey 11 2966 2.5 3.5 3.0 2.8 2996 chr2L 9393496 intron Shawl - chr2L 9394994 intron Shawl - chr2L 9396492 intron Shawl - chr2L_11_9390001 chr2L_9390001 RAL-310 101 chr2L 9485539 9485566 chr2L 9485626 9485653 6 87 1.0 3.0 2.0 2.0 114 chr2L 9485539 intergenic not near genes chr2L 9485596 intergenic not near genes chr2L 9485653 intergenic not near genes chr2L_6_9485001 chr2L_9485001 RAL-310 102 chr2L 9572499 9572518 chr2L 9576520 9576539 5 4023 23.5 28.5 26.0 0.2 4040 chr2L 9572499 exon CG3838 + chr2L 9574519 exon Mtpalpha - chr2L 9576539 5` UTR Mtpalpha - chr2L_5_9570001 chr2L_9570001 RAL-310 103 chr2L 9664909 9664940 chr2L 9665004 9665024 8 94 5.0 1.0 3.0 2.0 115 chr2L 9664909 intergenic not near genes chr2L 9664966 intergenic not near genes chr2L 9665024 intergenic not near genes chr2L_8_9660001 chr2L_9660001 RAL-310 104 chr2L 9828270 9828273 chr2L 9828348 9828353 5 79 4.5 7.5 6.0 0.7 83 chr2L 9828270 intron nAChRalpha6 - chr2L 9828312 intron nAChRalpha6 - chr2L 9828353 intron nAChRalpha6 - chr2L_5_9825001 chr2L_9825001 RAL-310 105 chr2L 9829578 9829600 chr2L 9829777 9829802 4 201 4.0 1.5 2.8 1.1 224 chr2L 9829578 intron nAChRalpha6 - chr2L 9829690 intron nAChRalpha6 - chr2L 9829802 intron nAChRalpha6 - chr2L_4_9825001 chr2L_9825001 RAL-310 106 chr2L 9973742 9973757 chr2L 9980843 9980876 HMS-Beagle 5 7110 5.0 3.5 4.2 1.0 7134 chr2L 9973742 intergenic not near genes chr2L 9977309 intergenic not near genes chr2L 9980876 intergenic not near genes chr2L_5_9975001 chr2L_9975001 RAL-310 107 chr2L 9986358 9986376 chr2L 9986449 9986469 5 89 4.5 5.0 4.8 0.9 111 chr2L 9986358 intron bib + chr2L 9986414 intron bib + chr2L 9986469 intron bib + chr2L_5_9985001 chr2L_9985001 RAL-310 108 chr2L 10051727 10051752 chr2L 10051810 10051833 10 82 1.5 3.5 2.5 2.9 106 chr2L 10051727 5` UTR CR44874 + chr2L 10051780 5` UTR CR44874 + chr2L 10051833 5` UTR CR44874 + chr2L_10_10050001 chr2L_10050001 RAL-310 109 chr2L 10153206 10153227 chr2L 10153285 10153299 4 77 4.5 6.0 5.2 0.6 93 chr2L 10153206 intron,exon CG44153 -,CG4839 + chr2L 10153252 intron,intron CG44153 -,CG4839 + chr2L 10153299 intron,intron CG44153 -,CG4839 + chr2L_4_10150001 chr2L_10150001 RAL-310 110 chr2L 10153230 10153237 chr2L 10153281 10153312 5 63 3.0 4.5 3.8 1.0 82 chr2L 10153230 intron,exon CG44153 -,CG4839 + chr2L 10153271 intron,intron CG44153 -,CG4839 + chr2L 10153312 intron,intron CG44153 -,CG4839 + chr2L_5_10150001 chr2L_10150001 RAL-310 111 chr2L 10156321 10156355 chr2L 10163791 10163818 blood 9 7465 4.0 3.5 3.8 1.9 7497 chr2L 10156321 intron,3` UTR CG44153 -,CG4839 + chr2L 10160070 intron CG44153 - chr2L 10163818 intron CG44153 - chr2L_9_10160001 chr2L_10160001 RAL-310 112 chr2L 10474385 10474413 chr2L 10474465 10474494 5 79 1.5 1.0 1.2 2.3 109 chr2L 10474385 intergenic RluA-1 - chr2L 10474440 intergenic RluA-1 - chr2L 10474494 intergenic RluA-1 - chr2L_5_10470001 chr2L_10470001 RAL-310 113 chr2L 10490277 10490303 chr2L 10490359 10490383 5 78 2.0 1.5 1.8 1.8 106 chr2L 10490277 3` UTR,3` UTR CG6144 +,CG13144 - chr2L 10490330 3` UTR,3` UTR CG6144 +,CG13144 - chr2L 10490383 3` UTR,3` UTR CG6144 +,CG13144 - chr2L_5_10490001 chr2L_10490001 RAL-310 114 chr2L 10580806 10580822 chr2L 10580874 10580886 5 75 1.0 3.0 2.0 1.7 80 chr2L 10580806 intron Trim9 + chr2L 10580846 intron Trim9 + chr2L 10580886 intron Trim9 + chr2L_5_10580001 chr2L_10580001 RAL-310 115 chr2L 10752134 10752166 chr2L 10752213 10752244 11 78 1.0 1.5 1.2 5.0 110 chr2L 10752134 intron CG17124 - chr2L 10752189 intron CG17124 - chr2L 10752244 intron CG17124 - chr2L_11_10750001 chr2L_10750001 RAL-310 116 chr2L 10755573 10755585 chr2L 10755682 10755686 4 107 1.0 0.5 0.8 2.2 113 chr2L 10755573 intron CG17124 - chr2L 10755630 intron CG17124 - chr2L 10755686 intron CG17124 - chr2L_4_10755001 chr2L_10755001 RAL-310 117 chr2L 10826732 10826744 chr2L 10826812 10826825 5 81 2.5 3.5 3.0 1.2 93 chr2L 10826732 intron Nos - chr2L 10826778 intron Nos - chr2L 10826825 intron Nos - chr2L_5_10825001 chr2L_10825001 RAL-310 118 chr2L 10862854 10862867 chr2L 10864461 10864470 Rt1c 5 1610 5.0 5.5 5.2 0.8 1616 chr2L 10862854 3` UTR CR43807 - chr2L 10863662 intron CR43807 - chr2L 10864470 3` UTR CR43807 - chr2L_5_10860001 chr2L_10860001 RAL-310 119 chr2L 10862868 10862876 chr2L 10864451 10864488 Rt1c 9 1608 3.5 3.0 3.2 2.1 1620 chr2L 10862868 3` UTR CR43807 - chr2L 10863678 intron CR43807 - chr2L 10864488 3` UTR CR43807 - chr2L_9_10860001 chr2L_10860001 RAL-310 120 chr2L 10946958 10946965 chr2L 10956172 10956172 roo 4 9213 1.0 9.0 5.0 0.7 9214 chr2L 10946958 intron dpr2 - chr2L 10951565 intron dpr2 - chr2L 10956172 intron dpr2 - chr2L_4_10950001 chr2L_10950001 RAL-310 121 chr2L 11183789 11183806 chr2L 11183885 11183902 5 96 0.0 2.0 1.0 2.5 113 chr2L 11183789 intron Ca-beta - chr2L 11183846 intron Ca-beta - chr2L 11183902 intron Ca-beta - chr2L_5_11180001 chr2L_11180001 RAL-310 122 chr2L 11339737 11339940 chr2L 11339814 11340016 6 72 2.5 1.0 1.8 2.1 279 chr2L 11339737 intergenic not near genes chr2L 11339876 intergenic not near genes chr2L 11340016 intergenic not near genes chr2L_6_11335001 chr2L_11335001 RAL-310 123 chr2L 11418658 11418685 chr2L 11418737 11418764 15 77 1.0 3.5 2.2 4.7 106 chr2L 11418658 intergenic not near genes chr2L 11418711 intergenic not near genes chr2L 11418764 intergenic not near genes chr2L_15_11415001 chr2L_11415001 RAL-310 124 chr2L 11433607 11433642 chr2L 11433686 11433720 8 72 1.0 1.0 1.0 4.0 113 chr2L 11433607 intergenic not near genes chr2L 11433664 intergenic not near genes chr2L 11433720 intergenic not near genes chr2L_8_11430001 chr2L_11430001 RAL-310 125 chr2L 11451277 11451294 chr2L 11451371 11451386 6 93 0.5 3.5 2.0 2.0 109 chr2L 11451277 intergenic not near genes chr2L 11451332 intergenic not near genes chr2L 11451386 intergenic not near genes chr2L_6_11450001 chr2L_11450001 RAL-310 126 chr2L 11563638 11563668 chr2L 11568842 11568872 copia 5 5199 5.0 1.5 3.2 1.2 5234 chr2L 11563638 intergenic not near genes chr2L 11566255 intergenic not near genes chr2L 11568872 intergenic not near genes chr2L_5_11565001 chr2L_11565001 RAL-310 127 chr2L 11677166 11677175 chr2L 11677297 11677305 4 130 1.5 4.0 2.8 1.1 139 chr2L 11677166 intergenic not near genes chr2L 11677236 intergenic not near genes chr2L 11677305 intergenic not near genes chr2L_4_11675001 chr2L_11675001 RAL-310 128 chr2L 11713517 11713534 chr2L 11720976 11721002 blood 5 7463 3.5 5.0 4.2 1.0 7485 chr2L 11713517 intergenic not near genes chr2L 11717260 intergenic not near genes chr2L 11721002 intergenic CR44143 + chr2L_5_11715001 chr2L_11715001 RAL-310 129 chr2L 12121917 12122153 chr2L 12121987 12122220 4 76 1.5 0.5 1.0 2.0 303 chr2L 12121917 intron CG17211 + chr2L 12122068 intron CG17211 + chr2L 12122220 intron CG17211 + chr2L_4_12120001 chr2L_12120001 RAL-310 130 chr2L 12157615 12157635 chr2L 12157686 12157699 9 76 3.5 2.5 3.0 2.2 84 chr2L 12157615 intron CG31760 + chr2L 12157657 intron CG31760 + chr2L 12157699 intron CG31760 + chr2L_9_12155001 chr2L_12155001 RAL-310 131 chr2L 12158516 12158536 chr2L 12158708 12158728 6 190 3.5 0.0 1.8 2.1 212 chr2L 12158516 intron CG31760 + chr2L 12158622 intron CG31760 + chr2L 12158728 intron CG31760 + chr2L_6_12155001 chr2L_12155001 RAL-310 132 chr2L 12246028 12246060 chr2L 12246106 12246116 7 74 4.0 3.0 3.5 1.6 88 chr2L 12246028 intron aret + chr2L 12246072 intron aret + chr2L 12246116 intron aret + chr2L_7_12245001 chr2L_12245001 RAL-310 133 chr2L 12263944 12263973 chr2L 12264026 12264055 7 81 3.5 3.5 3.5 1.6 111 chr2L 12263944 intron aret + chr2L 12264000 intron aret + chr2L 12264055 intron aret + chr2L_7_12260001 chr2L_12260001 RAL-310 134 chr2L 12426146 12426161 chr2L 12426216 12426244 8 78 1.0 4.0 2.5 2.3 98 chr2L 12426146 exon CG6405 + chr2L 12426195 exon CG6405 + chr2L 12426244 exon CG6405 + chr2L_8_12425001 chr2L_12425001 RAL-310 135 chr2L 12487890 12487920 chr2L 12487971 12487984 5 76 2.5 2.0 2.2 1.6 94 chr2L 12487890 intron bun - chr2L 12487937 intron bun - chr2L 12487984 intron bun - chr2L_5_12485001 chr2L_12485001 RAL-310 136 chr2L 12529416 12529445 chr2L 12529492 12529521 6 76 1.5 2.0 1.8 2.1 105 chr2L 12529416 intron bun - chr2L 12529468 intron bun - chr2L 12529521 intron bun - chr2L_6_12525001 chr2L_12525001 RAL-310 137 chr2L 12623400 12623427 chr2L 12623498 12623520 6 91 2.0 4.5 3.2 1.4 120 chr2L 12623400 intron,intron nub +,Ref2 - chr2L 12623460 intron,intron nub +,Ref2 - chr2L 12623520 intron,intron nub +,Ref2 - chr2L_6_12620001 chr2L_12620001 RAL-310 138 chr2L 12653032 12653060 chr2L 12653109 12653137 13 76 1.5 3.5 2.5 3.7 105 chr2L 12653032 intergenic not near genes chr2L 12653084 intergenic not near genes chr2L 12653137 intergenic not near genes chr2L_13_12650001 chr2L_12650001 RAL-310 139 chr2L 12739171 12739194 chr2L 12743952 12743972 Doc 4 4780 2.5 1.5 2.0 1.3 4801 chr2L 12739171 exon MRP + chr2L 12741572 intron MRP + chr2L 12743972 intron MRP + chr2L_4_12740001 chr2L_12740001 RAL-310 140 chr2L 12739195 12739201 chr2L 12743951 12743982 Doc 4 4772 1.5 1.5 1.5 1.6 4787 chr2L 12739195 intron MRP + chr2L 12741588 intron MRP + chr2L 12743982 exon MRP + chr2L_4_12740001 chr2L_12740001 RAL-310 141 chr2L 12751320 12751339 chr2L 12751394 12751422 6 80 3.0 3.0 3.0 1.5 102 chr2L 12751320 intergenic not near genes chr2L 12751371 intergenic not near genes chr2L 12751422 intergenic not near genes chr2L_6_12750001 chr2L_12750001 RAL-310 142 chr2L 12861694 12861730 chr2L 12863160 12863180 hobo 17 1459 2.5 3.5 3.0 4.2 1486 chr2L 12861694 intergenic not near genes chr2L 12862437 intergenic not near genes chr2L 12863180 intergenic not near genes chr2L_17_12860001 chr2L_12860001 RAL-310 143 chr2L 12933853 12933880 chr2L 12941320 12941346 blood 4 7466 2.5 3.0 2.8 1.1 7493 chr2L 12933853 intergenic not near genes chr2L 12937600 intergenic not near genes chr2L 12941346 intergenic not near genes chr2L_4_12935001 chr2L_12935001 RAL-310 144 chr2L 12963793 12963821 chr2L 12963895 12963911 7 99 2.0 4.0 3.0 1.8 118 chr2L 12963793 intergenic not near genes chr2L 12963852 intergenic not near genes chr2L 12963911 intergenic not near genes chr2L_7_12960001 chr2L_12960001 RAL-310 145 chr2L 13241959 13241987 chr2L 13244343 13244351 BS 6 2380 4.0 1.5 2.8 1.6 2392 chr2L 13241959 5` UTR CR45330 + chr2L 13243155 intron CR45330 + chr2L 13244351 5` UTR CR45330 + chr2L_6_13240001 chr2L_13240001 RAL-310 146 chr2L 13398727 13398747 chr2L 13398806 13398827 5 80 0.5 1.0 0.8 2.8 100 chr2L 13398727 intergenic CG10859 -,CR44600 -,CG7110 + chr2L 13398777 intergenic CR44600 -,CG10859 -,CG7110 + chr2L 13398827 intergenic CR44600 -,CG10859 -,CG7110 + chr2L_5_13395001 chr2L_13395001 RAL-310 147 chr2L 13405661 13405679 chr2L 13410444 13410476 Doc 7 4790 4.5 5.5 5.0 1.2 4815 chr2L 13405661 exon CG7110 + chr2L 13408068 intron CG7110 + chr2L 13410476 intron CG7110 + chr2L_7_13405001 chr2L_13405001 RAL-310 148 chr2L 13426186 13426199 chr2L 13426272 13426274 5 81 4.0 3.5 3.8 1.0 88 chr2L 13426186 intron CG42784 + chr2L 13426230 intron CG42784 + chr2L 13426274 intron CG42784 + chr2L_5_13425001 chr2L_13425001 RAL-310 149 chr2L 13620109 13620141 chr2L 13620335 13620364 6 226 1.0 4.0 2.5 1.7 255 chr2L 13620109 intron kuz + chr2L 13620236 intron kuz + chr2L 13620364 intron kuz + chr2L_6_13620001 chr2L_13620001 RAL-310 150 chr2L 13622151 13622171 chr2L 13622248 13622269 7 94 2.0 2.5 2.2 2.2 118 chr2L 13622151 intron kuz + chr2L 13622210 intron kuz + chr2L 13622269 intron kuz + chr2L_7_13620001 chr2L_13620001 RAL-310 151 chr2L 13705578 13705599 chr2L 13705676 13705678 4 93 3.5 1.5 2.5 1.1 100 chr2L 13705578 intron CG31814 - chr2L 13705628 intron CG31814 - chr2L 13705678 intron CG31814 - chr2L_4_13705001 chr2L_13705001 RAL-310 152 chr2L 13794696 13794731 chr2L 13794796 13794830 13 94 1.5 2.5 2.0 4.3 134 chr2L 13794696 intron Sec71 + chr2L 13794763 intron Sec71 + chr2L 13794830 intron Sec71 + chr2L_13_13790001 chr2L_13790001 RAL-310 153 chr2L 13853100 13853111 chr2L 13862250 13862260 roo 4 9150 2.5 0.5 1.5 1.6 9160 chr2L 13853100 intron CenG1A + chr2L 13857680 intron CenG1A + chr2L 13862260 intron CenG1A + chr2L_4_13855001 chr2L_13855001 RAL-310 154 chr2L 13918817 13918836 chr2L 13918898 13918923 5 86 3.0 2.5 2.8 1.3 106 chr2L 13918817 intron Ance-3 + chr2L 13918870 intron Ance-3 + chr2L 13918923 intron Ance-3 + chr2L_5_13915001 chr2L_13915001 RAL-310 155 chr2L 13981532 13981552 chr2L 13981608 13981643 6 84 2.0 0.5 1.2 2.7 111 chr2L 13981532 exon NimC2 + chr2L 13981588 intron NimC2 + chr2L 13981643 intron NimC2 + chr2L_6_13980001 chr2L_13980001 RAL-310 156 chr2L 14367860 14367880 chr2L 14367940 14367960 4 80 1.0 0.5 0.8 2.2 100 chr2L 14367860 intergenic not near genes chr2L 14367910 intergenic not near genes chr2L 14367960 intergenic not near genes chr2L_4_14365001 chr2L_14365001 RAL-310 157 chr2L 14588382 14588415 chr2L 14588536 14588568 4 153 0.5 0.5 0.5 2.7 186 chr2L 14588382 intergenic CG42680 - chr2L 14588475 intergenic CG42680 - chr2L 14588568 intergenic CG42680 - chr2L_4_14585001 chr2L_14585001 RAL-310 158 chr2L 14803879 14803913 chr2L 14809082 14809105 copia 8 5198 0.5 6.5 3.5 1.8 5226 chr2L 14803879 intergenic not near genes chr2L 14806492 intergenic not near genes chr2L 14809105 intergenic not near genes chr2L_8_14805001 chr2L_14805001 RAL-310 159 chr2L 14840979 14841010 chr2L 14841066 14841097 5 86 1.0 2.5 1.8 1.8 118 chr2L 14840979 3` UTR CR43805 - chr2L 14841038 3` UTR CR43805 - chr2L 14841097 3` UTR CR43805 - chr2L_5_14840001 chr2L_14840001 RAL-310 160 chr2L 14889981 14889984 chr2L 14890385 14890409 jockey 5 420 3.5 3.5 3.5 1.1 428 chr2L 14889981 intergenic not near genes chr2L 14890195 intergenic not near genes chr2L 14890409 intergenic not near genes chr2L_5_14890001 chr2L_14890001 RAL-310 161 chr2L 14984379 14984402 chr2L 14991981 14992004 opus 4 7602 3.0 2.0 2.5 1.1 7625 chr2L 14984379 intron mol - chr2L 14988192 intron mol - chr2L 14992004 intron mol - chr2L_4_14985001 chr2L_14985001 RAL-310 162 chr2L 15346048 15346082 chr2L 15346125 15346154 7 76 2.0 1.5 1.8 2.5 106 chr2L 15346048 intergenic not near genes chr2L 15346101 intergenic not near genes chr2L 15346154 intergenic not near genes chr2L_7_15345001 chr2L_15345001 RAL-310 163 chr2L 15446049 15446063 chr2L 15453518 15453532 blood 5 7468 2.5 1.0 1.8 1.8 7483 chr2L 15446049 intergenic not near genes chr2L 15449790 intergenic not near genes chr2L 15453532 intergenic not near genes chr2L_5_15445001 chr2L_15445001 RAL-310 164 chr2L 15586411 15586443 chr2L 15593460 15593491 297 6 7051 0.0 1.5 0.8 3.3 7080 chr2L 15586411 intergenic not near genes chr2L 15589951 intergenic not near genes chr2L 15593491 intergenic not near genes chr2L_6_15585001 chr2L_15585001 RAL-310 165 chr2L 15823350 15823370 chr2L 15823426 15823445 4 76 0.5 1.5 1.0 2.0 95 chr2L 15823350 intergenic CR44601 - chr2L 15823398 intergenic CR44601 - chr2L 15823445 intergenic not near genes chr2L_4_15820001 chr2L_15820001 RAL-310 166 chr2L 15956022 15956058 chr2L 15957489 15957496 hobo 6 1456 1.5 0.5 1.0 3.0 1474 chr2L 15956022 intron beat-Ib - chr2L 15956759 intron beat-Ib - chr2L 15957496 intron beat-Ib - chr2L_6_15955001 chr2L_15955001 RAL-310 167 chr2L 16051607 16051634 chr2L 16051686 16051704 6 77 2.0 2.0 2.0 2.0 97 chr2L 16051607 intron beat-Ia + chr2L 16051656 intron beat-Ia + chr2L 16051704 intron beat-Ia + chr2L_6_16050001 chr2L_16050001 RAL-310 168 chr2L 16062298 16062313 chr2L 16062608 16062625 4 311 0.0 0.5 0.2 3.3 327 chr2L 16062298 intron beat-Ia + chr2L 16062462 intron beat-Ia + chr2L 16062625 intron beat-Ia + chr2L_4_16060001 chr2L_16060001 RAL-310 169 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 7 145889 15.0 22.0 18.5 0.4 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_7_16140001 chr2L_16140001 RAL-310 170 chr2L 16141148 16141195 chr2L 16146367 16146402 copia 7 5203 0.0 0.0 0.0 7.0 5254 chr2L 16141148 intergenic not near genes chr2L 16143775 intergenic not near genes chr2L 16146402 intergenic not near genes chr2L_7_16140001 chr2L_16140001 RAL-310 171 chr2L 9084336 9084340 chr2L 16217660 16217660 8 7133321 9.5 22.0 15.8 0.5 7133324 chr2L 9084336 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_8_12650001 chr2L_12650001 RAL-310 172 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 4 145889 15.0 22.0 18.5 0.2 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_4_16140001 chr2L_16140001 RAL-310 173 chr2L 16280272 16280290 chr2L 16281421 16281445 1360 8 1149 3.5 5.5 4.5 1.5 1173 chr2L 16280272 intron crp - chr2L 16280858 intron crp - chr2L 16281445 intron crp - chr2L_8_16280001 chr2L_16280001 RAL-310 174 chr2L 16298735 16298747 chr2L 16298814 16298816 4 76 4.0 2.0 3.0 1.0 81 chr2L 16298735 intron heix - chr2L 16298776 intron heix - chr2L 16298816 intron heix - chr2L_4_16295001 chr2L_16295001 RAL-310 175 chr2L 16432603 16432616 chr2L 16432683 16432713 5 93 0.0 1.0 0.5 3.3 110 chr2L 16432603 intron CG5888 - chr2L 16432658 intron CG5888 - chr2L 16432713 intron CG5888 - chr2L_5_16430001 chr2L_16430001 RAL-310 176 chr2L 16443988 16444017 chr2L 16444065 16444081 6 75 3.0 0.0 1.5 2.4 93 chr2L 16443988 intron CG5888 - chr2L 16444034 intron CG5888 - chr2L 16444081 intron CG5888 - chr2L_6_16440001 chr2L_16440001 RAL-310 177 chr2L 16469970 16469989 chr2L 16470120 16470141 4 150 0.0 2.0 1.0 2.0 171 chr2L 16469970 intron dac - chr2L 16470056 intron dac - chr2L 16470141 intron dac - chr2L_4_16470001 chr2L_16470001 RAL-310 178 chr2L 16721024 16721061 chr2L 16721101 16721136 13 73 1.0 1.5 1.2 5.9 112 chr2L 16721024 intron Cyt-c-p + chr2L 16721080 intron Cyt-c-p + chr2L 16721136 intron Cyt-c-p + chr2L_13_16720001 chr2L_16720001 RAL-310 179 chr2L 16939995 16940009 chr2L 16940073 16940087 4 77 0.5 3.0 1.8 1.4 92 chr2L 16939995 intergenic not near genes chr2L 16940041 intergenic not near genes chr2L 16940087 intergenic not near genes chr2L_4_16940001 chr2L_16940001 RAL-310 180 chr2L 17000123 17000153 chr2L 17000244 17000273 6 121 0.5 5.5 3.0 1.5 150 chr2L 17000123 intergenic not near genes chr2L 17000198 intergenic not near genes chr2L 17000273 intergenic not near genes chr2L_6_17000001 chr2L_17000001 RAL-310 181 chr2L 17087393 17087404 chr2L 17087499 17087521 4 111 1.5 0.0 0.8 2.2 128 chr2L 17087393 intergenic CG12620 + chr2L 17087457 intergenic CG12620 + chr2L 17087521 intergenic CG12620 + chr2L_4_17085001 chr2L_17085001 RAL-310 182 chr2L 17273195 17273223 chr2L 17277976 17278006 F-element 6 4782 1.5 4.0 2.8 1.6 4811 chr2L 17273195 intergenic not near genes chr2L 17275600 intergenic not near genes chr2L 17278006 intergenic not near genes chr2L_6_17275001 chr2L_17275001 RAL-310 183 chr2L 17292884 17292908 chr2L 17292962 17292986 9 76 4.5 3.0 3.8 1.9 102 chr2L 17292884 intergenic not near genes chr2L 17292935 intergenic not near genes chr2L 17292986 intergenic not near genes chr2L_9_17290001 chr2L_17290001 RAL-310 184 chr2L 17319127 17319147 chr2L 17319203 17319220 4 75 2.5 3.5 3.0 1.0 93 chr2L 17319127 3` UTR CR45696 - chr2L 17319174 3` UTR CR45696 - chr2L 17319220 3` UTR CR45696 - chr2L_4_17315001 chr2L_17315001 RAL-310 185 chr2L 17380451 17380482 chr2L 17380721 17380743 6 266 1.0 2.5 1.8 2.1 292 chr2L 17380451 intron Lrch - chr2L 17380597 intron Lrch - chr2L 17380743 intron Lrch - chr2L_6_17380001 chr2L_17380001 RAL-310 186 chr2L 17637169 17637197 chr2L 17637254 17637282 5 81 0.5 1.5 1.0 2.5 113 chr2L 17637169 intergenic not near genes chr2L 17637226 intergenic not near genes chr2L 17637282 intergenic not near genes chr2L_5_17635001 chr2L_17635001 RAL-310 187 chr2L 17727869 17727875 chr2L 17729336 17729340 hobo 4 1466 3.0 7.5 5.2 0.6 1471 chr2L 17727869 intron CadN - chr2L 17728604 intron CadN - chr2L 17729340 intron CadN - chr2L_4_17725001 chr2L_17725001 RAL-310 188 chr2L 17766791 17766812 chr2L 17766875 17766896 7 85 1.0 0.0 0.5 4.7 105 chr2L 17766791 intron CadN - chr2L 17766844 intron CadN - chr2L 17766896 intron CadN - chr2L_7_17765001 chr2L_17765001 RAL-310 189 chr2L 17819928 17819952 chr2L 17825130 17825155 copia 4 5202 1.0 2.5 1.8 1.4 5227 chr2L 17819928 intron CadN2 - chr2L 17822542 intron CadN2 - chr2L 17825155 intron CadN2 - chr2L_4_17820001 chr2L_17820001 RAL-310 190 chr2L 17911969 17911983 chr2L 17914155 17914166 pogo 4 2185 4.0 2.0 3.0 1.0 2197 chr2L 17911969 intergenic not near genes chr2L 17913068 intergenic not near genes chr2L 17914166 intergenic CG43271 - chr2L_4_17910001 chr2L_17910001 RAL-310 191 chr2L 18051880 18051905 chr2L 18061027 18061052 roo 5 9145 2.5 3.5 3.0 1.2 9172 chr2L 18051880 intron rdo + chr2L 18056466 intron rdo + chr2L 18061052 intron rdo + chr2L_5_18055001 chr2L_18055001 RAL-310 192 chr2L 18085239 18085333 chr2L 18085317 18085458 7 103 0.5 1.0 0.8 3.9 219 chr2L 18085239 exon CG31741 + chr2L 18085348 exon CG31741 + chr2L 18085458 exon CG31741 + chr2L_7_18085001 chr2L_18085001 RAL-310 193 chr2L 18117919 18117946 chr2L 18118017 18118044 6 96 0.5 2.0 1.2 2.7 125 chr2L 18117919 intergenic not near genes chr2L 18117982 intergenic not near genes chr2L 18118044 intergenic not near genes chr2L_6_18115001 chr2L_18115001 RAL-310 194 chr2L 18306652 18306674 chr2L 18306745 18306767 6 91 4.5 2.0 3.2 1.4 115 chr2L 18306652 intergenic not near genes chr2L 18306710 intergenic not near genes chr2L 18306767 intergenic not near genes chr2L_6_18305001 chr2L_18305001 RAL-310 195 chr2L 18359555 18359587 chr2L 18359653 18359685 7 98 1.5 2.0 1.8 2.5 130 chr2L 18359555 intron Fas3 + chr2L 18359620 intron Fas3 + chr2L 18359685 intron Fas3 + chr2L_7_18355001 chr2L_18355001 RAL-310 196 chr2L 18408033 18408039 chr2L 18412805 18412823 Doc 4 4781 3.0 0.5 1.8 1.4 4790 chr2L 18408033 intergenic not near genes chr2L 18410428 intergenic not near genes chr2L 18412823 intergenic not near genes chr2L_4_18410001 chr2L_18410001 RAL-310 197 chr2L 18458948 18458960 chr2L 18459033 18459045 6 85 3.0 5.0 4.0 1.2 97 chr2L 18458948 intron let-7-C + chr2L 18458996 intron let-7-C + chr2L 18459045 intron let-7-C + chr2L_6_18455001 chr2L_18455001 RAL-310 198 chr2L 18561564 18561579 chr2L 18561665 18561679 6 101 1.0 3.0 2.0 2.0 115 chr2L 18561564 intron Pde11 - chr2L 18561622 intron Pde11 - chr2L 18561679 intron Pde11 - chr2L_6_18560001 chr2L_18560001 RAL-310 199 chr2L 18628462 18628490 chr2L 18628552 18628565 7 88 3.5 2.5 3.0 1.8 103 chr2L 18628462 intron MESR3 + chr2L 18628514 intron MESR3 + chr2L 18628565 intron MESR3 + chr2L_7_18625001 chr2L_18625001 RAL-310 200 chr2L 18812556 18812590 chr2L 18812819 18812853 8 262 1.5 4.0 2.8 2.1 297 chr2L 18812556 intergenic CG17325 +,CG42305 + chr2L 18812704 5` UTR,5` UTR CG17325 +,CG42305 + chr2L 18812853 5` UTR,5` UTR CG17325 +,CG42305 + chr2L_8_18810001 chr2L_18810001 RAL-310 201 chr2L 18883856 18883886 chr2L 18883936 18883966 5 77 1.5 4.5 3.0 1.2 110 chr2L 18883856 intergenic not near genes chr2L 18883911 intergenic not near genes chr2L 18883966 intergenic not near genes chr2L_5_18880001 chr2L_18880001 RAL-310 202 chr2L 18898398 18898427 chr2L 18898477 18898509 4 81 0.5 1.0 0.8 2.2 111 chr2L 18898398 intergenic not near genes chr2L 18898454 intergenic not near genes chr2L 18898509 intergenic not near genes chr2L_4_18895001 chr2L_18895001 RAL-310 203 chr2L 19024096 19024097 chr2L 21768291 21768291 5 2744194 7.5 23.0 15.2 0.3 2744195 chr2L 19024096 3` UTR CR43700 - chr2L 20396194 intron CG10947 - chr2L 21768291 intron CG31612 - chr2L_5_20395001 chr2L_20395001 RAL-310 204 chr2L 19121042 19121059 chr2L 19121120 19121131 6 77 3.5 2.0 2.8 1.6 89 chr2L 19121042 intergenic l(2)37Cc - chr2L 19121086 intergenic l(2)37Cc - chr2L 19121131 intergenic l(2)37Cc - chr2L_6_19120001 chr2L_19120001 RAL-310 205 chr2L 19147383 19147400 chr2L 19154418 19154435 297 4 7031 3.0 0.5 1.8 1.4 7052 chr2L 19147383 intron brat + chr2L 19150909 intron brat + chr2L 19154435 intron brat + chr2L_4_19150001 chr2L_19150001 RAL-310 206 chr2L 19226912 19226935 chr2L 19226998 19226998 5 78 3.5 3.0 3.2 1.2 86 chr2L 19226912 intergenic not near genes chr2L 19226955 intergenic not near genes chr2L 19226998 intergenic not near genes chr2L_5_19225001 chr2L_19225001 RAL-310 207 chr2L 19246829 19246839 chr2L 19246909 19246919 4 80 1.5 1.5 1.5 1.6 90 chr2L 19246829 intergenic not near genes chr2L 19246874 intergenic not near genes chr2L 19246919 intergenic not near genes chr2L_4_19245001 chr2L_19245001 RAL-310 208 chr2L 19345014 19345026 chr2L 19357222 19357229 blood 4 12207 3.0 1.5 2.2 1.2 12215 chr2L 19345014 intron dnt - chr2L 19351122 intron dnt - chr2L 19357229 intron dnt - chr2L_4_19350001 chr2L_19350001 RAL-310 209 chr2L 19487213 19487239 chr2L 19487292 19487306 7 79 1.5 1.5 1.5 2.8 93 chr2L 19487213 intergenic CG13083 + chr2L 19487260 intergenic CG13083 + chr2L 19487306 intergenic CG13083 + chr2L_7_19485001 chr2L_19485001 RAL-310 210 chr2L 19544612 19544619 chr2L 19544680 19544686 4 72 6.0 7.5 6.8 0.5 74 chr2L 19544612 exon ref(2)P + chr2L 19544649 exon ref(2)P + chr2L 19544686 exon ref(2)P + chr2L_4_19540001 chr2L_19540001 RAL-310 211 chr2L 19544620 19544630 chr2L 19544665 19544678 4 46 6.5 7.0 6.8 0.5 58 chr2L 19544620 exon ref(2)P + chr2L 19544649 exon ref(2)P + chr2L 19544678 exon ref(2)P + chr2L_4_19540001 chr2L_19540001 RAL-310 212 chr2L 19620104 19620124 chr2L 19621079 19621106 jockey 8 984 4.0 4.0 4.0 1.6 1002 chr2L 19620104 intron Lar + chr2L 19620605 intron Lar + chr2L 19621106 intron Lar + chr2L_8_19620001 chr2L_19620001 RAL-310 213 chr2L 19703542 19703561 chr2L 19712678 19712695 roo 4 9135 1.5 3.5 2.5 1.1 9153 chr2L 19703542 intron Lar + chr2L 19708118 intron Lar + chr2L 19712695 intron Lar + chr2L_4_19705001 chr2L_19705001 RAL-310 214 chr2L 19737365 19737389 chr2L 19740825 19740844 1360 9 3456 3.0 7.5 5.2 1.5 3479 chr2L 19737365 intergenic Nf-YB + chr2L 19739104 intergenic not near genes chr2L 19740844 intergenic not near genes chr2L_9_19735001 chr2L_19735001 RAL-310 215 chr2L 19806549 19806580 chr2L 19806715 19806772 4 172 2.0 0.0 1.0 2.0 223 chr2L 19806549 intron sick + chr2L 19806660 intron sick + chr2L 19806772 intron sick + chr2L_4_19805001 chr2L_19805001 RAL-310 216 chr2L 19811442 19811449 chr2L 19811629 19811630 5 188 3.0 0.0 1.5 2.0 188 chr2L 19811442 intron sick + chr2L 19811536 intron sick + chr2L 19811630 intron sick + chr2L_5_19810001 chr2L_19810001 RAL-310 217 chr2L 19823268 19823294 chr2L 19823347 19823383 4 86 1.5 0.0 0.8 2.2 115 chr2L 19823268 intron sick + chr2L 19823326 intron sick + chr2L 19823383 intron sick + chr2L_4_19820001 chr2L_19820001 RAL-310 218 chr2L 19837297 19837311 chr2L 19837365 19837391 6 78 2.0 3.5 2.8 1.6 94 chr2L 19837297 intron sick + chr2L 19837344 intron sick + chr2L 19837391 intron sick + chr2L_6_19835001 chr2L_19835001 RAL-310 219 chr2L 19951000 19951019 chr2L 19951072 19951102 7 78 0.0 3.5 1.8 2.5 102 chr2L 19951000 intron sick + chr2L 19951051 intron sick + chr2L 19951102 intron sick + chr2L_7_19950001 chr2L_19950001 RAL-310 220 chr2L 20232391 20232407 chr2L 20232462 20232486 5 77 0.5 3.0 1.8 1.8 95 chr2L 20232391 intergenic not near genes chr2L 20232438 intergenic not near genes chr2L 20232486 intergenic not near genes chr2L_5_20230001 chr2L_20230001 RAL-310 221 chr2L 20296514 20296523 chr2L 20296595 20296604 4 81 1.0 4.0 2.5 1.1 90 chr2L 20296514 intergenic CR43414 - chr2L 20296559 intergenic CR43414 - chr2L 20296604 intergenic CR43414 - chr2L_4_20295001 chr2L_20295001 RAL-310 222 chr2L 20383457 20383467 chr2L 20383537 20383558 6 87 2.0 3.0 2.5 1.7 101 chr2L 20383457 intergenic not near genes chr2L 20383508 intergenic not near genes chr2L 20383558 intergenic not near genes chr2L_6_20380001 chr2L_20380001 RAL-310 223 chr2L 20396811 20396819 chr2L 20396885 20396895 4 76 3.0 1.0 2.0 1.3 84 chr2L 20396811 intron CG10947 - chr2L 20396853 intron CG10947 - chr2L 20396895 intron CG10947 - chr2L_4_20395001 chr2L_20395001 RAL-310 224 chr2L 20498119 20498141 chr2L 20498330 20498356 5 214 1.0 3.0 2.0 1.7 237 chr2L 20498119 intergenic not near genes chr2L 20498238 intergenic not near genes chr2L 20498356 intergenic not near genes chr2L_5_20495001 chr2L_20495001 RAL-310 225 chr2L 20553191 20553220 chr2L 20553267 20553296 5 76 2.5 1.5 2.0 1.7 105 chr2L 20553191 intergenic not near genes chr2L 20553244 intergenic not near genes chr2L 20553296 intergenic not near genes chr2L_5_20550001 chr2L_20550001 RAL-310 226 chr2L 20568665 20568684 chr2L 20569054 20569073 X-element 5 390 2.0 2.5 2.2 1.6 408 chr2L 20568665 intron CR45347 + chr2L 20568869 intron CR45347 + chr2L 20569073 intron CR45347 + chr2L_5_20565001 chr2L_20565001 RAL-310 227 chr2L 20576226 20576238 chr2L 20583694 20583705 blood 4 7466 6.5 3.0 4.8 0.7 7479 chr2L 20576226 intergenic not near genes chr2L 20579966 intergenic not near genes chr2L 20583705 3` UTR CR44909 - chr2L_4_20575001 chr2L_20575001 RAL-310 228 chr2L 20817842 20817862 chr2L 20817921 20817941 8 77 2.5 2.5 2.5 2.3 99 chr2L 20817842 exon CheB38a - chr2L 20817892 exon CheB38a - chr2L 20817941 exon CheB38a - chr2L_8_20815001 chr2L_20815001 RAL-310 229 chr2L 20946950 20946957 chr2L 20947031 20947043 5 86 4.5 2.0 3.2 1.2 93 chr2L 20946950 intergenic CR44606 - chr2L 20946996 intergenic CR44606 - chr2L 20947043 intergenic CR44606 - chr2L_5_20945001 chr2L_20945001 RAL-310 230 chr2L 21020271 21020305 chr2L 21023948 21023982 NOF 9 3675 2.0 2.5 2.2 2.8 3711 chr2L 21020271 intron CG42238 - chr2L 21022126 intron CG42238 - chr2L 21023982 intron CG42238 - chr2L_9_21020001 chr2L_21020001 RAL-310 231 chr2L 21041153 21041165 chr2L 21049396 21049426 Tirant 4 8253 1.5 1.5 1.5 1.6 8273 chr2L 21041153 intron CG42238 - chr2L 21045290 intron CG42238 - chr2L 21049426 intron CG42238 - chr2L_4_21045001 chr2L_21045001 RAL-310 232 chr2L 21286607 21286634 chr2L 21286685 21286712 7 75 1.5 2.0 1.8 2.5 105 chr2L 21286607 exon Mio - chr2L 21286660 intron Mio - chr2L 21286712 intron Mio - chr2L_7_21285001 chr2L_21285001 RAL-310 233 chr2L 21898923 21898946 chr2L 21899023 21899056 4 105 0.0 1.5 0.8 2.2 133 chr2L 21898923 intergenic not near genes chr2L 21898990 intergenic not near genes chr2L 21899056 intergenic not near genes chr2L_4_21895001 chr2L_21895001 RAL-310 234 chr2L 21981682 21981713 chr2L 21990847 21990877 roo 5 9164 0.5 4.5 2.5 1.4 9195 chr2L 21981682 exon CG2528 - chr2L 21986280 intron CG2528 - chr2L 21990877 exon CG2528 - chr2L_5_21985001 chr2L_21985001 RAL-310 235 chr2L 22005766 22005784 chr2L 22005856 22005866 6 87 5.0 1.0 3.0 1.5 100 chr2L 22005766 intergenic not near genes chr2L 22005816 intergenic not near genes chr2L 22005866 intergenic not near genes chr2L_6_22005001 chr2L_22005001 RAL-310 236 chr2L 22239426 22239458 chr2L 22239506 22239538 4 80 1.5 3.0 2.2 1.2 112 chr2L 22239426 3` UTR CR43765 - chr2L 22239482 3` UTR CR43765 - chr2L 22239538 3` UTR CR43765 - chr2L_4_22235001 chr2L_22235001 RAL-310 237 chr2L 22350262 22350297 chr2L 22350364 22350396 10 98 3.0 2.0 2.5 2.9 134 chr2L 22350262 intron CG17018 + chr2L 22350329 intron CG17018 + chr2L 22350396 intron CG17018 + chr2L_10_22350001 chr2L_22350001 RAL-310 238 chr2L 22545980 22546003 chr2L 22546076 22546099 7 95 5.0 1.5 3.2 1.7 119 chr2L 22545980 intron CG17490 + chr2L 22546040 intron CG17490 + chr2L 22546099 intron CG17490 + chr2L_7_22545001 chr2L_22545001 RAL-310 239 chr2L 22693921 22693951 chr2L 22694008 22694038 7 82 1.0 2.0 1.5 2.8 117 chr2L 22693921 intron CG40006 - chr2L 22693980 intron CG40006 - chr2L 22694038 intron CG40006 - chr2L_7_22690001 chr2L_22690001 RAL-310 240 chr2L 22983947 22983969 chr2L 22984022 22984030 4 72 2.0 3.5 2.8 1.1 83 chr2L 22983947 intron cta + chr2L 22983988 intron cta + chr2L 22984030 intron cta + chr2L_4_22980001 chr2L_22980001 RAL-310 241 chr2L 23241846 23241879 chr2L 23241926 23241933 4 73 1.0 2.0 1.5 1.6 87 chr2L 23241846 intergenic not near genes chr2L 23241890 intergenic not near genes chr2L 23241933 intergenic not near genes chr2L_4_23240001 chr2L_23240001 RAL-310 242 chr2R 469957 469980 chr2R 473196 473215 F-element 5 3239 2.0 1.5 1.8 1.8 3258 chr2R 469957 intergenic not near genes chr2R 471586 intergenic not near genes chr2R 473215 intergenic not near genes chr2R_5_470001 chr2R_470001 RAL-310 243 chr2R 529322 529357 chr2R 537947 537958 Max-element 5 8619 1.5 4.0 2.8 1.3 8636 chr2R 529322 intron CG40378 + chr2R 533640 intron CG40378 + chr2R 537958 intron CG40378 + chr2R_5_530001 chr2R_530001 RAL-310 244 chr2R 552762 552788 chr2R 553972 554004 1360 5 1213 11.5 10.0 10.8 0.4 1242 chr2R 552762 intron CG40378 + chr2R 553383 intron CG40378 + chr2R 554004 intron CG40378 + chr2R_5_550001 chr2R_550001 RAL-310 245 chr2R 1082369 1082380 chr2R 1087145 1087156 Doc 4 4774 7.5 4.5 6.0 0.6 4787 chr2R 1082369 intron rl + chr2R 1084762 intron rl + chr2R 1087156 intron rl + chr2R_4_1080001 chr2R_1080001 RAL-310 246 chr2R 1082381 1082384 chr2R 1087133 1087157 Doc 5 4769 7.0 3.5 5.2 0.8 4776 chr2R 1082381 intron rl + chr2R 1084769 intron rl + chr2R 1087157 intron rl + chr2R_5_1080001 chr2R_1080001 RAL-310 247 chr2R 1732864 1732885 chr2R 1733010 1733032 7 145 0.0 4.0 2.0 2.3 168 chr2R 1732864 intron CG41520 + chr2R 1732948 intron CG41520 + chr2R 1733032 intron CG41520 + chr2R_7_1730001 chr2R_1730001 RAL-310 248 chr2R 1880704 1880705 chr2R 5639655 5639656 5 3758950 11.5 7.0 9.2 0.5 3758952 chr2R 1880704 intron CG17684 - chr2R 3760180 intergenic not near genes chr2R 5639656 intergenic not near genes chr2R_5_3760001 chr2R_3760001 RAL-310 249 chr2R 2498986 2498999 chr2R 2508132 2508146 roo 5 9147 4.5 1.0 2.8 1.3 9160 chr2R 2498986 intron MFS17 - chr2R 2503566 intron MFS17 - chr2R 2508146 intron MFS17 - chr2R_5_2500001 chr2R_2500001 RAL-310 250 chr2R 3291929 3292102 chr2R 3915098 3915262 5 623166 6.5 19.0 12.8 0.4 623333 chr2R 3291929 intergenic not near genes chr2R 3603596 intergenic not near genes chr2R 3915262 intron uex - chr2R_5_3600001 chr2R_3600001 RAL-310 251 chr2R 4312953 4312987 chr2R 4313037 4313066 8 82 2.0 1.0 1.5 3.2 113 chr2R 4312953 intergenic not near genes chr2R 4313010 intergenic not near genes chr2R 4313066 intergenic not near genes chr2R_8_4310001 chr2R_4310001 RAL-310 252 chr2R 4329554 4329566 chr2R 4329640 4329652 6 85 6.0 1.5 3.8 1.2 98 chr2R 4329554 intron Gprk1 - chr2R 4329603 intron Gprk1 - chr2R 4329652 intron Gprk1 - chr2R_6_4325001 chr2R_4325001 RAL-310 253 chr2R 4508161 4508186 chr2R 4508242 4508267 8 81 2.5 3.0 2.8 2.1 106 chr2R 4508161 intron CR44100 + chr2R 4508214 5` UTR CR44100 + chr2R 4508267 5` UTR CR44100 + chr2R_8_4505001 chr2R_4505001 RAL-310 254 chr2R 4783417 4783453 chr2R 4783495 4783531 13 77 2.5 2.0 2.2 4.1 114 chr2R 4783417 intergenic not near genes chr2R 4783474 intergenic not near genes chr2R 4783531 intergenic not near genes chr2R_13_4780001 chr2R_4780001 RAL-310 255 chr2R 4838874 4838878 chr2R 4840397 4840401 transib2 4 1522 4.0 2.5 3.2 1.0 1527 chr2R 4838874 intergenic not near genes chr2R 4839638 intergenic not near genes chr2R 4840401 intergenic not near genes chr2R_4_4835001 chr2R_4835001 RAL-310 256 chr2R 5008875 5008896 chr2R 5009944 5009947 4 1062 0.0 1.5 0.8 2.2 1072 chr2R 5008875 intron Ir41a + chr2R 5009411 intron Ir41a + chr2R 5009947 intron Ir41a + chr2R_4_5005001 chr2R_5005001 RAL-310 257 chr2R 5028512 5028542 chr2R 5028705 5028714 5 189 8.5 0.0 4.2 1.0 202 chr2R 5028512 intergenic not near genes chr2R 5028613 intergenic not near genes chr2R 5028714 intergenic not near genes chr2R_5_5025001 chr2R_5025001 RAL-310 258 chr2R 5256760 5256791 chr2R 5256848 5256879 16 87 5.5 4.0 4.8 2.8 119 chr2R 5256760 intergenic not near genes chr2R 5256820 intergenic not near genes chr2R 5256879 intergenic not near genes chr2R_16_5255001 chr2R_5255001 RAL-310 259 chr2R 5302087 5302122 chr2R 5304235 5304266 7 2147 22.0 53.0 37.5 0.2 2179 chr2R 5302087 intergenic not near genes chr2R 5303176 intergenic not near genes chr2R 5304266 intergenic not near genes chr2R_7_5300001 chr2R_5300001 RAL-310 260 chr2R 5421529 5421559 chr2R 5421611 5421641 8 84 24.5 22.0 23.2 0.3 112 chr2R 5421529 intron laccase2 + chr2R 5421585 intron laccase2 + chr2R 5421641 intron laccase2 + chr2R_8_5420001 chr2R_5420001 RAL-310 261 chr2R 5491665 5491696 chr2R 5491758 5491789 9 90 1.5 2.5 2.0 3.0 124 chr2R 5491665 intron CG30440 - chr2R 5491727 intron CG30440 - chr2R 5491789 intron CG30440 - chr2R_9_5490001 chr2R_5490001 RAL-310 262 chr2R 5581397 5581425 chr2R 5627605 5627634 12 46208 2.5 3.5 3.0 3.0 46237 chr2R 5581397 intergenic not near genes chr2R 5604516 exon Fis1 - chr2R 5627634 intergenic not near genes chr2R_12_5600001 chr2R_5600001 RAL-310 263 chr2R 5664280 5664310 chr2R 5664360 5664390 5 80 2.0 4.0 3.0 1.2 110 chr2R 5664280 5` UTR CR45472 + chr2R 5664335 intron CR45472 + chr2R 5664390 intron CR45472 + chr2R_5_5660001 chr2R_5660001 RAL-310 264 chr2R 5742955 5742981 chr2R 5743040 5743066 8 83 2.5 3.0 2.8 2.1 111 chr2R 5742955 intergenic not near genes chr2R 5743010 intergenic not near genes chr2R 5743066 intergenic not near genes chr2R_8_5740001 chr2R_5740001 RAL-310 265 chr2R 5771704 5771728 chr2R 5771777 5771794 8 72 2.5 1.0 1.8 2.9 90 chr2R 5771704 intron Gp210 + chr2R 5771749 intron Gp210 + chr2R 5771794 intron Gp210 + chr2R_8_5770001 chr2R_5770001 RAL-310 266 chr2R 5772524 5772737 chr2R 5772603 5772850 7 93 0.5 1.5 1.0 3.5 326 chr2R 5772524 3` UTR Gp210 + chr2R 5772687 3` UTR Gp210 + chr2R 5772850 3` UTR Gp210 + chr2R_7_5770001 chr2R_5770001 RAL-310 267 chr2R 5840752 5840779 chr2R 5840835 5840862 8 81 0.5 2.0 1.2 3.6 110 chr2R 5840752 intron dpr12 + chr2R 5840807 intron dpr12 + chr2R 5840862 intron dpr12 + chr2R_8_5840001 chr2R_5840001 RAL-310 268 chr2R 5869276 5869296 chr2R 5874351 5874371 flea 5 5072 3.0 0.5 1.8 1.8 5095 chr2R 5869276 intergenic not near genes chr2R 5871824 intergenic not near genes chr2R 5874371 intergenic not near genes chr2R_5_5870001 chr2R_5870001 RAL-310 269 chr2R 5888063 5888093 chr2R 5888173 5888203 7 107 0.5 0.0 0.2 5.8 140 chr2R 5888063 intergenic not near genes chr2R 5888133 intergenic not near genes chr2R 5888203 intergenic not near genes chr2R_7_5885001 chr2R_5885001 RAL-310 270 chr2R 6096737 6096751 chr2R 6101910 6101917 BS 7 5184 2.0 3.5 2.8 1.8 5180 chr2R 6096737 intron EcR - chr2R 6099327 intron EcR - chr2R 6101917 intron EcR - chr2R_7_6095001 chr2R_6095001 RAL-310 271 chr2R 6108691 6108710 chr2R 6108786 6108818 8 97 4.0 1.5 2.8 2.1 127 chr2R 6108691 intron EcR - chr2R 6108754 intron EcR - chr2R 6108818 intron EcR - chr2R_8_6105001 chr2R_6105001 RAL-310 272 chr2R 6206773 6206798 chr2R 6206849 6206872 6 72 3.0 3.5 3.2 1.4 99 chr2R 6206773 intergenic CG17994 - chr2R 6206822 intergenic CG17994 - chr2R 6206872 intergenic CG17994 - chr2R_6_6205001 chr2R_6205001 RAL-310 273 chr2R 6494533 6494549 chr2R 6499288 6499294 F-element 7 4757 4.0 1.0 2.5 2.0 4761 chr2R 6494533 intergenic not near genes chr2R 6496914 intergenic not near genes chr2R 6499294 intergenic not near genes chr2R_7_6495001 chr2R_6495001 RAL-310 274 chr2R 6685876 6685897 chr2R 6685958 6685979 4 82 4.0 0.0 2.0 1.3 103 chr2R 6685876 intron,intron CG9422 +,Tdc2 - chr2R 6685928 intron,intron CG9422 +,Tdc2 - chr2R 6685979 intron,intron CG9422 +,Tdc2 - chr2R_4_6685001 chr2R_6685001 RAL-310 275 chr2R 6905149 6905170 chr2R 6905228 6905228 7 76 3.5 9.0 6.2 1.0 79 chr2R 6905149 intron CG30158 + chr2R 6905188 intron CG30158 + chr2R 6905228 intron CG30158 + chr2R_7_6905001 chr2R_6905001 RAL-310 276 chr2R 6978808 6978829 chr2R 6978950 6978971 5 141 2.5 3.0 2.8 1.3 163 chr2R 6978808 intron vimar - chr2R 6978890 intron vimar - chr2R 6978971 intron vimar - chr2R_5_6975001 chr2R_6975001 RAL-310 277 chr2R 7154900 7154906 chr2R 7154973 7154984 4 76 2.0 4.5 3.2 1.0 84 chr2R 7154900 intron,exon pk +,Spn43Ad - chr2R 7154942 intron,exon pk +,Spn43Ad - chr2R 7154984 intron,exon pk +,Spn43Ad - chr2R_4_7150001 chr2R_7150001 RAL-310 278 chr2R 7160554 7160581 chr2R 7160632 7160659 5 78 1.0 1.0 1.0 2.5 105 chr2R 7160554 intron pk + chr2R 7160606 intron pk + chr2R 7160659 intron pk + chr2R_5_7160001 chr2R_7160001 RAL-310 279 chr2R 7209845 7209865 chr2R 7217590 7217613 roo 4 7747 2.0 2.0 2.0 1.3 7768 chr2R 7209845 intron pk + chr2R 7213729 intron pk + chr2R 7217613 intron pk + chr2R_4_7210001 chr2R_7210001 RAL-310 280 chr2R 7235827 7235853 chr2R 7240917 7240925 jockey 5 5087 3.5 3.0 3.2 1.2 5098 chr2R 7235827 intergenic not near genes chr2R 7238376 intergenic not near genes chr2R 7240925 intergenic not near genes chr2R_5_7235001 chr2R_7235001 RAL-310 281 chr2R 7303146 7303162 chr2R 7303257 7303271 4 109 4.5 1.0 2.8 1.1 125 chr2R 7303146 intergenic not near genes chr2R 7303208 intergenic not near genes chr2R 7303271 intergenic not near genes chr2R_4_7300001 chr2R_7300001 RAL-310 282 chr2R 7310779 7310795 chr2R 7310845 7310876 5 75 2.0 3.0 2.5 1.4 97 chr2R 7310779 intergenic not near genes chr2R 7310828 intergenic not near genes chr2R 7310876 intergenic not near genes chr2R_5_7310001 chr2R_7310001 RAL-310 283 chr2R 7759672 7759706 chr2R 7759762 7759796 4 90 1.0 1.0 1.0 2.0 124 chr2R 7759672 intron,intron CG30497 -,CG45093 - chr2R 7759734 intron,intron CG30497 -,CG45093 - chr2R 7759796 intron,intron CG30497 -,CG45093 - chr2R_4_7755001 chr2R_7755001 RAL-310 284 chr2R 7869191 7869210 chr2R 7873977 7873995 Doc 6 4784 2.5 2.5 2.5 1.7 4804 chr2R 7869191 intron Dgk - chr2R 7871593 intron Dgk - chr2R 7873995 intron Dgk - chr2R_6_7870001 chr2R_7870001 RAL-310 285 chr2R 7869211 7869216 chr2R 7873967 7874001 Doc 4 4777 2.0 2.5 2.2 1.2 4790 chr2R 7869211 intron Dgk - chr2R 7871606 intron Dgk - chr2R 7874001 intron Dgk - chr2R_4_7870001 chr2R_7870001 RAL-310 286 chr2R 7916436 7916458 chr2R 7916514 7916535 7 79 4.0 5.5 4.8 1.2 99 chr2R 7916436 5` UTR CG12159 - chr2R 7916486 intergenic CG12159 -,Cul1 + chr2R 7916535 intergenic CG12159 -,Cul1 + chr2R_7_7915001 chr2R_7915001 RAL-310 287 chr2R 8015651 8015682 chr2R 8017673 8017705 7 2020 3.0 4.0 3.5 1.6 2054 chr2R 8015651 intergenic mir-4981 + chr2R 8016678 intergenic not near genes chr2R 8017705 intergenic not near genes chr2R_7_8015001 chr2R_8015001 RAL-310 288 chr2R 8089269 8089285 chr2R 8089355 8089371 5 86 1.0 2.5 1.8 1.8 102 chr2R 8089269 3` UTR sut2 + chr2R 8089320 intergenic sut2 +,sut3 + chr2R 8089371 intergenic sut2 +,sut3 + chr2R_5_8085001 chr2R_8085001 RAL-310 289 chr2R 8330886 8330895 chr2R 8331348 8331377 roo 6 474 4.0 1.5 2.8 1.6 491 chr2R 8330886 intron pdm3 + chr2R 8331132 intron pdm3 + chr2R 8331377 intron pdm3 + chr2R_6_8330001 chr2R_8330001 RAL-310 290 chr2R 8338654 8338671 chr2R 8338736 8338752 4 82 0.0 1.5 0.8 2.2 98 chr2R 8338654 intron pdm3 + chr2R 8338703 intron pdm3 + chr2R 8338752 intron pdm3 + chr2R_4_8335001 chr2R_8335001 RAL-310 291 chr2R 8722765 8722791 chr2R 8723006 8723032 pogo 8 239 4.0 5.0 4.5 1.5 267 chr2R 8722765 intron CG14767 - chr2R 8722898 intron CG14767 - chr2R 8723032 intron CG14767 - chr2R_8_8720001 chr2R_8720001 RAL-310 292 chr2R 8976610 8976640 chr2R 8976689 8976714 4 78 3.5 1.0 2.2 1.2 104 chr2R 8976610 intron CG8213 - chr2R 8976662 intron CG8213 - chr2R 8976714 intron CG8213 - chr2R_4_8975001 chr2R_8975001 RAL-310 293 chr2R 9031983 9032012 chr2R 9032059 9032090 8 75 1.5 6.5 4.0 1.6 107 chr2R 9031983 intergenic not near genes chr2R 9032036 intergenic not near genes chr2R 9032090 intergenic not near genes chr2R_8_9030001 chr2R_9030001 RAL-310 294 chr2R 9151306 9151332 chr2R 9157775 9157802 Burdock 4 6470 2.5 2.0 2.2 1.2 6496 chr2R 9151306 3` UTR CG30345 + chr2R 9154554 intergenic not near genes chr2R 9157802 intergenic CG8008 - chr2R_4_9150001 chr2R_9150001 RAL-310 295 chr2R 9161981 9161995 chr2R 9162065 9162068 4 82 2.5 2.5 2.5 1.1 87 chr2R 9161981 5` UTR CR44283 + chr2R 9162024 intergenic CG8046 -,CR44283 + chr2R 9162068 3` UTR CG8046 - chr2R_4_9160001 chr2R_9160001 RAL-310 296 chr2R 9191904 9191935 chr2R 9191989 9191999 14 82 1.5 1.5 1.5 5.6 95 chr2R 9191904 5` UTR,5` UTR CG45085 -,CG8026 - chr2R 9191952 5` UTR,5` UTR CG45085 -,CG8026 - chr2R 9191999 5` UTR,5` UTR CG45085 -,CG8026 - chr2R_14_9190001 chr2R_9190001 RAL-310 297 chr2R 9212691 9212719 chr2R 9213177 9213204 roo 4 485 6.5 4.0 5.2 0.6 513 chr2R 9212691 intergenic CR45309 + chr2R 9212948 intergenic CR45309 + chr2R 9213204 5` UTR CR45309 + chr2R_4_9210001 chr2R_9210001 RAL-310 298 chr2R 9426847 9426853 chr2R 9427013 9427040 4 182 2.5 2.5 2.5 1.1 193 chr2R 9426847 5` UTR Pdk + chr2R 9426944 5` UTR Pdk + chr2R 9427040 5` UTR Pdk + chr2R_4_9425001 chr2R_9425001 RAL-310 299 chr2R 9653255 9653283 chr2R 9653339 9653354 6 80 3.5 2.5 3.0 1.5 99 chr2R 9653255 intron Mmp2 - chr2R 9653304 intron Mmp2 - chr2R 9653354 intron Mmp2 - chr2R_6_9650001 chr2R_9650001 RAL-310 300 chr2R 9699403 9699420 chr2R 9699804 9699810 5 399 0.5 1.0 0.8 2.8 407 chr2R 9699403 intergenic not near genes chr2R 9699606 intergenic not near genes chr2R 9699810 intergenic not near genes chr2R_5_9695001 chr2R_9695001 RAL-310 301 chr2R 9740742 9740772 chr2R 9740854 9740886 7 112 0.5 2.0 1.2 3.2 144 chr2R 9740742 intron sqa - chr2R 9740814 intron sqa - chr2R 9740886 intron sqa - chr2R_7_9740001 chr2R_9740001 RAL-310 302 chr2R 9860866 9860899 chr2R 9860950 9860956 5 72 2.5 1.5 2.0 1.7 90 chr2R 9860866 intron CG1516 - chr2R 9860911 intron CG1516 - chr2R 9860956 intron CG1516 - chr2R_5_9860001 chr2R_9860001 RAL-310 303 chr2R 9950307 9950327 chr2R 9950384 9950394 7 75 0.5 1.5 1.0 3.5 87 chr2R 9950307 intron Mef2 - chr2R 9950350 intron Mef2 - chr2R 9950394 intron Mef2 - chr2R_7_9950001 chr2R_9950001 RAL-310 304 chr2R 10216194 10216213 chr2R 10216272 10216291 6 77 3.0 1.5 2.2 1.9 97 chr2R 10216194 intron,intron CG12912 -,Hr46 - chr2R 10216242 intron,intron CG12912 -,Hr46 - chr2R 10216291 intron,intron CG12912 -,Hr46 - chr2R_6_10215001 chr2R_10215001 RAL-310 305 chr2R 10352693 10352703 chr2R 10352769 10352774 5 75 1.5 1.0 1.2 2.3 81 chr2R 10352693 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352734 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352774 intron,exon,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R_5_10350001 chr2R_10350001 RAL-310 306 chr2R 10429019 10429051 chr2R 10429095 10429126 6 76 0.5 0.5 0.5 4.0 107 chr2R 10429019 intergenic not near genes chr2R 10429072 intergenic not near genes chr2R 10429126 intergenic not near genes chr2R_6_10425001 chr2R_10425001 RAL-310 307 chr2R 10454095 10454124 chr2R 10454172 10454201 7 77 0.0 4.0 2.0 2.3 106 chr2R 10454095 intron,intron Galphao +,Cyp49a1 - chr2R 10454148 intron,intron Galphao +,Cyp49a1 - chr2R 10454201 intron,intron Galphao +,Cyp49a1 - chr2R_7_10450001 chr2R_10450001 RAL-310 308 chr2R 10556365 10556381 chr2R 10556441 10556457 8 79 0.0 3.5 1.8 2.9 92 chr2R 10556365 intergenic not near genes chr2R 10556411 intergenic not near genes chr2R 10556457 intergenic not near genes chr2R_8_10555001 chr2R_10555001 RAL-310 309 chr2R 10621240 10621254 chr2R 10621354 10621364 4 110 2.5 1.5 2.0 1.3 124 chr2R 10621240 intron CG11883 + chr2R 10621302 intron CG11883 + chr2R 10621364 intron CG11883 + chr2R_4_10620001 chr2R_10620001 RAL-310 310 chr2R 10644079 10644091 chr2R 10644157 10644169 4 78 1.0 0.5 0.8 2.2 90 chr2R 10644079 intron Git - chr2R 10644124 intron Git - chr2R 10644169 intron Git - chr2R_4_10640001 chr2R_10640001 RAL-310 311 chr2R 10658054 10658087 chr2R 10658146 10658179 7 91 2.0 2.0 2.0 2.3 125 chr2R 10658054 intergenic not near genes chr2R 10658116 intergenic not near genes chr2R 10658179 intergenic not near genes chr2R_7_10655001 chr2R_10655001 RAL-310 312 chr2R 10671251 10671280 chr2R 10671329 10671330 8 72 2.5 0.0 1.2 3.6 79 chr2R 10671251 intergenic not near genes chr2R 10671290 intergenic not near genes chr2R 10671330 intergenic not near genes chr2R_8_10670001 chr2R_10670001 RAL-310 313 chr2R 10790163 10790177 chr2R 10790229 10790265 4 82 3.5 2.5 3.0 1.0 102 chr2R 10790163 intron CG33144 - chr2R 10790214 intron CG33144 - chr2R 10790265 intron CG33144 - chr2R_4_10790001 chr2R_10790001 RAL-310 314 chr2R 10796005 10796039 chr2R 10796087 10796091 4 72 1.5 0.5 1.0 2.0 86 chr2R 10796005 intron CG33144 - chr2R 10796048 intron CG33144 - chr2R 10796091 intron CG33144 - chr2R_4_10795001 chr2R_10795001 RAL-310 315 chr2R 10947092 10947107 chr2R 10947179 10947186 7 85 5.0 0.0 2.5 2.0 94 chr2R 10947092 5` UTR CR45228 + chr2R 10947139 intergenic CR45228 + chr2R 10947186 intergenic CR45228 + chr2R_7_10945001 chr2R_10945001 RAL-310 316 chr2R 10948031 10948051 chr2R 10955581 10955593 17.6 5 7547 2.0 3.5 2.8 1.3 7562 chr2R 10948031 intergenic not near genes chr2R 10951812 intergenic not near genes chr2R 10955593 intergenic not near genes chr2R_5_10950001 chr2R_10950001 RAL-310 317 chr2R 11009817 11009845 chr2R 11018991 11019000 roo 8 9170 2.5 4.0 3.2 1.9 9183 chr2R 11009817 intron luna - chr2R 11014408 intron luna - chr2R 11019000 intron luna - chr2R_8_11010001 chr2R_11010001 RAL-310 318 chr2R 11118167 11118183 chr2R 11118244 11118260 5 77 0.0 1.5 0.8 2.8 93 chr2R 11118167 3` UTR Cyp12d1-p - chr2R 11118214 3` UTR Cyp12d1-p - chr2R 11118260 3` UTR Cyp12d1-p - chr2R_5_11115001 chr2R_11115001 RAL-310 319 chr2R 11119703 11119724 chr2R 11119834 11119847 8 128 2.0 0.0 1.0 4.0 144 chr2R 11119703 3` UTR Cyp12d1-p - chr2R 11119775 3` UTR Cyp12d1-p - chr2R 11119847 3` UTR Cyp12d1-p - chr2R_8_11115001 chr2R_11115001 RAL-310 320 chr2R 11176246 11176260 chr2R 11176523 11176537 4 278 4.5 1.0 2.8 1.1 291 chr2R 11176246 intron shn + chr2R 11176392 intron shn + chr2R 11176537 intron shn + chr2R_4_11175001 chr2R_11175001 RAL-310 321 chr2R 11207813 11207847 chr2R 11208006 11208040 BS 7 188 8.0 1.0 4.5 1.3 227 chr2R 11207813 intron shn + chr2R 11207926 intron shn + chr2R 11208040 intron shn + chr2R_7_11205001 chr2R_11205001 RAL-310 322 chr2R 11465850 11465869 chr2R 11465935 11465944 6 82 2.0 1.5 1.8 2.1 94 chr2R 11465850 intergenic not near genes chr2R 11465897 intergenic not near genes chr2R 11465944 intergenic not near genes chr2R_6_11465001 chr2R_11465001 RAL-310 323 chr2R 11472647 11472679 chr2R 11473844 11473874 pogo 4 1195 1.0 1.5 1.2 1.8 1227 chr2R 11472647 intergenic not near genes chr2R 11473260 intergenic not near genes chr2R 11473874 intergenic not near genes chr2R_4_11470001 chr2R_11470001 RAL-310 324 chr2R 11494600 11494632 chr2R 11494688 11494720 7 87 1.5 3.0 2.2 2.2 120 chr2R 11494600 intron inv + chr2R 11494660 intron inv + chr2R 11494720 intron inv + chr2R_7_11490001 chr2R_11490001 RAL-310 325 chr2R 11516574 11516607 chr2R 11516710 11516743 12 133 2.0 4.0 3.0 3.0 169 chr2R 11516574 intergenic not near genes chr2R 11516658 intergenic not near genes chr2R 11516743 intergenic not near genes chr2R_12_11515001 chr2R_11515001 RAL-310 326 chr2R 8518779 8518803 chr2R 12066173 12066197 7 3547397 6.0 12.0 9.0 0.7 3547418 chr2R 8518779 intron mtt - chr2R 10292488 intron CAP + chr2R 12066197 intron CG8888 - chr2R_7_10290001 chr2R_10290001 RAL-310 327 chr2R 12104679 12104703 chr2R 12104758 12104782 10 78 5.5 5.5 5.5 1.5 103 chr2R 12104679 intron jeb - chr2R 12104730 intron jeb - chr2R 12104782 intron jeb - chr2R_10_12100001 chr2R_12100001 RAL-310 328 chr2R 12146482 12146498 chr2R 12147592 12147592 4 1106 12.0 25.5 18.8 0.2 1110 chr2R 12146482 intron,3` UTR Hen1 +,CG8878 - chr2R 12147037 intron,exon Hen1 +,CG8878 - chr2R 12147592 intron,exon Hen1 +,CG8878 - chr2R_4_12145001 chr2R_12145001 RAL-310 329 chr2R 12145909 12145941 chr2R 12148602 12148634 8 2696 22.0 27.0 24.5 0.3 2725 chr2R 12145909 exon Hen1 + chr2R 12147272 intron,intron Hen1 +,CG8878 - chr2R 12148634 intron,exon Hen1 +,CG8878 - chr2R_8_12145001 chr2R_12145001 RAL-310 330 chr2R 12187473 12187480 chr2R 12190091 12190124 12 2623 53.5 47.5 50.5 0.2 2651 chr2R 12187473 exon Cyp6g1 + chr2R 12188798 exon Cyp6g2 - chr2R 12190124 exon Cyp6g2 - chr2R_12_12185001 chr2R_12185001 RAL-310 331 chr2R 12236230 12236241 chr2R 12236321 12236332 5 91 3.5 2.0 2.8 1.3 102 chr2R 12236230 intergenic not near genes chr2R 12236281 intergenic not near genes chr2R 12236332 intergenic not near genes chr2R_5_12235001 chr2R_12235001 RAL-310 332 chr2R 12240760 12240780 chr2R 12240836 12240847 5 74 0.5 0.0 0.2 4.2 87 chr2R 12240760 exon CG13170 + chr2R 12240804 3` UTR CG13170 + chr2R 12240847 intergenic CG13170 +,CG43315 + chr2R_5_12240001 chr2R_12240001 RAL-310 333 chr2R 12363387 12363417 chr2R 12363819 12363847 9 431 0.5 3.0 1.8 3.2 460 chr2R 12363387 intergenic CG30043 + chr2R 12363617 intergenic CG30043 + chr2R 12363847 intergenic not near genes chr2R_9_12360001 chr2R_12360001 RAL-310 334 chr2R 12501706 12501718 chr2R 12503848 12503880 Rt1c 6 2157 1.5 4.0 2.8 1.6 2174 chr2R 12501706 intron fdl - chr2R 12502793 intron fdl - chr2R 12503880 intron fdl - chr2R_6_12500001 chr2R_12500001 RAL-310 335 chr2R 12504144 12504179 chr2R 12504221 12504224 7 72 3.5 3.0 3.2 1.7 80 chr2R 12504144 intron fdl - chr2R 12504184 intron fdl - chr2R 12504224 intron fdl - chr2R_7_12500001 chr2R_12500001 RAL-310 336 chr2R 12536009 12536033 chr2R 12536095 12536110 7 89 2.5 2.5 2.5 2.0 101 chr2R 12536009 intron fra + chr2R 12536060 intron fra + chr2R 12536110 intron fra + chr2R_7_12535001 chr2R_12535001 RAL-310 337 chr2R 12548545 12548552 chr2R 12548622 12548629 4 75 0.0 8.0 4.0 0.8 84 chr2R 12548545 intron fra + chr2R 12548587 intron fra + chr2R 12548629 intron fra + chr2R_4_12545001 chr2R_12545001 RAL-310 338 chr2R 12726325 12726354 chr2R 12726417 12726446 4 92 3.5 4.0 3.8 0.8 121 chr2R 12726325 intron CG42663 + chr2R 12726386 intron CG42663 + chr2R 12726446 intron CG42663 + chr2R_4_12725001 chr2R_12725001 RAL-310 339 chr2R 13004951 13004965 chr2R 13005118 13005132 5 165 5.5 2.5 4.0 1.0 181 chr2R 13004951 intron Su(z)2 + chr2R 13005042 intron Su(z)2 + chr2R 13005132 intron Su(z)2 + chr2R_5_13005001 chr2R_13005001 RAL-310 340 chr2R 13106411 13106424 chr2R 13106508 13106519 4 94 2.5 4.0 3.2 1.0 108 chr2R 13106411 intergenic not near genes chr2R 13106465 intergenic not near genes chr2R 13106519 intergenic not near genes chr2R_4_13105001 chr2R_13105001 RAL-310 341 chr2R 13431491 13431500 chr2R 13431570 13431579 4 79 1.5 1.0 1.2 1.8 88 chr2R 13431491 intron CG42321 - chr2R 13431535 intron CG42321 - chr2R 13431579 intron CG42321 - chr2R_4_13430001 chr2R_13430001 RAL-310 342 chr2R 13438862 13438893 chr2R 13440181 13440212 15 1320 11.0 30.5 20.8 0.7 1350 chr2R 13438862 5` UTR CG42321 - chr2R 13439537 3` UTR cnn - chr2R 13440212 exon cnn - chr2R_15_13435001 chr2R_13435001 RAL-310 343 chr2R 13566261 13566291 chr2R 13566341 13566371 10 80 1.0 1.5 1.2 4.5 110 chr2R 13566261 intergenic not near genes chr2R 13566316 intergenic not near genes chr2R 13566371 intergenic not near genes chr2R_10_13565001 chr2R_13565001 RAL-310 344 chr2R 13648725 13648752 chr2R 13649150 13649161 8 422 1.5 3.0 2.2 2.5 436 chr2R 13648725 intron fas + chr2R 13648943 intron fas + chr2R 13649161 intron fas + chr2R_8_13645001 chr2R_13645001 RAL-310 345 chr2R 13652706 13652717 chr2R 13652785 13652796 6 79 2.5 1.0 1.8 2.1 90 chr2R 13652706 intron fas + chr2R 13652751 intron fas + chr2R 13652796 intron fas + chr2R_6_13650001 chr2R_13650001 RAL-310 346 chr2R 13721219 13721229 chr2R 13721289 13721291 4 72 3.0 2.0 2.5 1.1 72 chr2R 13721219 intron fas + chr2R 13721255 intron fas + chr2R 13721291 intron fas + chr2R_4_13720001 chr2R_13720001 RAL-310 347 chr2R 13768986 13768996 chr2R 13769084 13769095 4 98 3.5 2.0 2.8 1.1 109 chr2R 13768986 intergenic not near genes chr2R 13769040 intergenic not near genes chr2R 13769095 intergenic not near genes chr2R_4_13765001 chr2R_13765001 RAL-310 348 chr2R 13851888 13851913 chr2R 13851965 13851989 9 77 1.5 3.0 2.2 2.8 101 chr2R 13851888 exon CG30485 + chr2R 13851938 exon CG30485 + chr2R 13851989 exon CG30485 + chr2R_9_13850001 chr2R_13850001 RAL-310 349 chr2R 13905604 13905627 chr2R 13907586 13907593 Rt1a 5 1976 3.0 3.5 3.2 1.2 1989 chr2R 13905604 intron shot - chr2R 13906598 intron shot - chr2R 13907593 intron shot - chr2R_5_13905001 chr2R_13905001 RAL-310 350 chr2R 14277578 14277601 chr2R 14277660 14277683 4 82 3.0 3.5 3.2 1.0 105 chr2R 14277578 5` UTR Ih + chr2R 14277630 5` UTR Ih + chr2R 14277683 5` UTR Ih + chr2R_4_14275001 chr2R_14275001 RAL-310 351 chr2R 14378985 14379002 chr2R 14379449 14379466 5 463 3.5 2.0 2.8 1.3 481 chr2R 14378985 intron Dh44-R1 + chr2R 14379226 intron Dh44-R1 + chr2R 14379466 intron Dh44-R1 + chr2R_5_14375001 chr2R_14375001 RAL-310 352 chr2R 14467315 14467325 chr2R 14476463 14476482 roo 4 9155 1.5 2.0 1.8 1.4 9167 chr2R 14467315 intergenic not near genes chr2R 14471898 intergenic not near genes chr2R 14476482 5` UTR CR44462 + chr2R_4_14470001 chr2R_14470001 RAL-310 353 chr2R 14497392 14497418 chr2R 14498554 14498584 1360 4 1165 1.0 0.5 0.8 2.2 1192 chr2R 14497392 3` UTR Cpsf160 - chr2R 14497988 intron Cpsf160 - chr2R 14498584 3` UTR Cpsf160 - chr2R_4_14495001 chr2R_14495001 RAL-310 354 chr2R 14641410 14641437 chr2R 14641496 14641523 5 86 0.5 2.0 1.2 2.3 113 chr2R 14641410 intergenic not near genes chr2R 14641466 intergenic not near genes chr2R 14641523 intergenic not near genes chr2R_5_14640001 chr2R_14640001 RAL-310 355 chr2R 14790359 14790373 chr2R 14790469 14790498 6 124 0.0 3.5 1.8 2.1 139 chr2R 14790359 intron kn - chr2R 14790428 intron kn - chr2R 14790498 intron kn - chr2R_6_14790001 chr2R_14790001 RAL-310 356 chr2R 14855034 14855061 chr2R 14855126 14855153 8 91 2.0 2.0 2.0 2.7 119 chr2R 14855034 5` UTR Ciao1 - chr2R 14855094 intergenic Ciao1 -,HPS1 + chr2R 14855153 intergenic Ciao1 -,HPS1 + chr2R_8_14855001 chr2R_14855001 RAL-310 357 chr2R 14914332 14914343 chr2R 14914448 14914460 6 116 2.5 1.5 2.0 2.0 128 chr2R 14914332 intron CG10249 - chr2R 14914396 intron CG10249 - chr2R 14914460 intron CG10249 - chr2R_6_14910001 chr2R_14910001 RAL-310 358 chr2R 14968449 14968467 chr2R 14968522 14968538 5 77 4.0 2.0 3.0 1.2 89 chr2R 14968449 intron ckn + chr2R 14968494 intron ckn + chr2R 14968538 intron ckn + chr2R_5_14965001 chr2R_14965001 RAL-310 359 chr2R 15004727 15004757 chr2R 15005056 15005086 jockey 8 329 1.0 1.0 1.0 4.0 359 chr2R 15004727 intergenic not near genes chr2R 15004906 intergenic not near genes chr2R 15005086 intergenic not near genes chr2R_8_15000001 chr2R_15000001 RAL-310 360 chr2R 15015455 15015490 chr2R 15022879 15022906 mdg1 7 7423 3.0 1.0 2.0 2.3 7451 chr2R 15015455 intron hbs + chr2R 15019180 intron hbs + chr2R 15022906 intron hbs + chr2R_7_15015001 chr2R_15015001 RAL-310 361 chr2R 15046623 15046633 chr2R 15046738 15046748 5 115 4.5 1.0 2.8 1.3 125 chr2R 15046623 intergenic not near genes chr2R 15046686 intergenic not near genes chr2R 15046748 intergenic not near genes chr2R_5_15045001 chr2R_15045001 RAL-310 362 chr2R 15095378 15095403 chr2R 15095441 15095445 7 68 5.0 6.5 5.8 1.0 67 chr2R 15095378 intergenic not near genes chr2R 15095412 intergenic not near genes chr2R 15095445 intergenic not near genes chr2R_7_15095001 chr2R_15095001 RAL-310 363 chr2R 15101014 15101036 chr2R 15101109 15101131 8 90 3.0 2.0 2.5 2.3 117 chr2R 15101014 intergenic not near genes chr2R 15101072 intergenic not near genes chr2R 15101131 intergenic not near genes chr2R_8_15100001 chr2R_15100001 RAL-310 364 chr2R 15119333 15119351 chr2R 15127808 15127808 Tirant 5 8472 3.0 3.0 3.0 1.2 8475 chr2R 15119333 intron chn + chr2R 15123570 intron chn + chr2R 15127808 intron chn + chr2R_5_15120001 chr2R_15120001 RAL-310 365 chr2R 15137969 15137992 chr2R 15138049 15138074 5 80 2.0 0.0 1.0 2.5 105 chr2R 15137969 intron chn + chr2R 15138022 intron chn + chr2R 15138074 intron chn + chr2R_5_15135001 chr2R_15135001 RAL-310 366 chr2R 15296161 15296172 chr2R 15296244 15296254 4 82 4.5 4.0 4.2 0.8 93 chr2R 15296161 intron Trpm - chr2R 15296208 intron Trpm - chr2R 15296254 intron Trpm - chr2R_4_15295001 chr2R_15295001 RAL-310 367 chr2R 15645679 15645704 chr2R 15645774 15645800 4 94 1.5 0.0 0.8 2.2 121 chr2R 15645679 intron CG42524 + chr2R 15645740 intron CG42524 + chr2R 15645800 intron CG42524 + chr2R_4_15645001 chr2R_15645001 RAL-310 368 chr2R 15755217 15755253 chr2R 15755300 15755333 5 82 1.0 1.5 1.2 2.3 116 chr2R 15755217 intron CG30089 + chr2R 15755275 intron CG30089 + chr2R 15755333 intron CG30089 + chr2R_5_15755001 chr2R_15755001 RAL-310 369 chr2R 15833520 15833549 chr2R 15833607 15833636 8 81 4.0 3.5 3.8 1.7 116 chr2R 15833520 intron,intron tun +,Poxn - chr2R 15833578 intron,intron tun +,Poxn - chr2R 15833636 intron,intron tun +,Poxn - chr2R_8_15830001 chr2R_15830001 RAL-310 370 chr2R 16547017 16547033 chr2R 16547097 16547112 4 78 0.0 1.0 0.5 2.7 95 chr2R 16547017 intergenic not near genes chr2R 16547064 intergenic not near genes chr2R 16547112 intergenic not near genes chr2R_4_16545001 chr2R_16545001 RAL-310 371 chr2R 16732632 16732653 chr2R 16732719 16732740 4 87 1.5 4.0 2.8 1.1 108 chr2R 16732632 5` UTR CG30463 - chr2R 16732686 5` UTR CG30463 - chr2R 16732740 5` UTR CG30463 - chr2R_4_16730001 chr2R_16730001 RAL-310 372 chr2R 16775662 16775672 chr2R 16775924 16775939 4 266 0.5 3.5 2.0 1.3 277 chr2R 16775662 3` UTR Arp53D + chr2R 16775800 intergenic Arp53D + chr2R 16775939 intergenic Arp53D + chr2R_4_16775001 chr2R_16775001 RAL-310 373 chr2R 16885958 16885983 chr2R 16886028 16886034 5 71 1.0 1.0 1.0 2.5 76 chr2R 16885958 intron CG8910 - chr2R 16885996 intron CG8910 - chr2R 16886034 intron CG8910 - chr2R_5_16885001 chr2R_16885001 RAL-310 374 chr2R 16902764 16902794 chr2R 16902885 16902915 6 118 2.5 1.5 2.0 2.0 151 chr2R 16902764 intergenic not near genes chr2R 16902840 intergenic not near genes chr2R 16902915 intergenic not near genes chr2R_6_16900001 chr2R_16900001 RAL-310 375 chr2R 16960780 16960800 chr2R 16960892 16960912 9 111 4.5 2.0 3.2 2.1 132 chr2R 16960780 intergenic not near genes chr2R 16960846 intergenic not near genes chr2R 16960912 intergenic not near genes chr2R_9_16960001 chr2R_16960001 RAL-310 376 chr2R 17236514 17236542 chr2R 17241716 17241716 copia 5 5197 0.5 3.5 2.0 1.7 5202 chr2R 17236514 intron mbl + chr2R 17239115 intron mbl + chr2R 17241716 intron mbl + chr2R_5_17235001 chr2R_17235001 RAL-310 377 chr2R 17561601 17561616 chr2R 17561680 17561695 5 77 4.0 4.0 4.0 1.0 94 chr2R 17561601 exon Klp54D + chr2R 17561648 intron Klp54D + chr2R 17561695 intron Klp54D + chr2R_5_17560001 chr2R_17560001 RAL-310 378 chr2R 17784030 17784052 chr2R 17784271 17784293 pogo 5 238 5.0 4.0 4.5 0.9 263 chr2R 17784030 intergenic mir-31a - chr2R 17784162 intergenic mir-31a - chr2R 17784293 intergenic mir-31a - chr2R_5_17780001 chr2R_17780001 RAL-310 379 chr2R 17835031 17835061 chr2R 17835125 17835143 5 88 2.5 2.0 2.2 1.6 112 chr2R 17835031 intron grh + chr2R 17835087 intron grh + chr2R 17835143 intron grh + chr2R_5_17835001 chr2R_17835001 RAL-310 380 chr2R 18185797 18185810 chr2R 18185879 18185892 5 82 3.0 2.5 2.8 1.3 95 chr2R 18185797 intron CG33958 - chr2R 18185844 intron CG33958 - chr2R 18185892 intron CG33958 - chr2R_5_18185001 chr2R_18185001 RAL-310 381 chr2R 18402507 18402535 chr2R 18402595 18402622 8 86 2.5 5.0 3.8 1.7 115 chr2R 18402507 intergenic not near genes chr2R 18402564 intergenic not near genes chr2R 18402622 intergenic not near genes chr2R_8_18400001 chr2R_18400001 RAL-310 382 chr2R 18404801 18404830 chr2R 18404880 18404907 10 75 4.0 3.0 3.5 2.2 106 chr2R 18404801 exon GstE5 + chr2R 18404854 exon GstE5 + chr2R 18404907 exon GstE5 + chr2R_10_18400001 chr2R_18400001 RAL-310 383 chr2R 18526592 18526623 chr2R 18526674 18526686 10 80 2.5 1.5 2.0 3.3 94 chr2R 18526592 intergenic CG43066 + chr2R 18526639 intergenic CG43066 + chr2R 18526686 intergenic CG43066 + chr2R_10_18525001 chr2R_18525001 RAL-310 384 chr2R 18575812 18575830 chr2R 18581990 18582016 3S18 6 6183 1.0 5.0 3.0 1.5 6204 chr2R 18575812 intron GEFmeso - chr2R 18578914 intron GEFmeso - chr2R 18582016 intron GEFmeso - chr2R_6_18575001 chr2R_18575001 RAL-310 385 chr2R 18590873 18590901 chr2R 18600025 18600053 roo 8 9152 1.5 5.0 3.2 1.9 9180 chr2R 18590873 intron GEFmeso - chr2R 18595463 intron GEFmeso - chr2R 18600053 intron GEFmeso - chr2R_8_18595001 chr2R_18595001 RAL-310 386 chr2R 18863337 18863344 chr2R 18863399 18863409 4 69 4.0 3.5 3.8 0.8 72 chr2R 18863337 intergenic CG43069 + chr2R 18863373 intergenic CG43069 + chr2R 18863409 intergenic CG43069 +,CG43070 + chr2R_4_18860001 chr2R_18860001 RAL-310 387 chr2R 19007106 19007131 chr2R 19007205 19007215 5 91 5.0 3.0 4.0 1.0 109 chr2R 19007106 intron tn + chr2R 19007160 intron tn + chr2R 19007215 intron tn + chr2R_5_19005001 chr2R_19005001 RAL-310 388 chr2R 19012939 19012958 chr2R 19013033 19013050 4 94 2.5 2.0 2.2 1.2 111 chr2R 19012939 intergenic not near genes chr2R 19012994 intergenic not near genes chr2R 19013050 intergenic not near genes chr2R_4_19010001 chr2R_19010001 RAL-310 389 chr2R 19300971 19300989 chr2R 19301043 19301072 5 81 3.5 2.0 2.8 1.3 101 chr2R 19300971 intron Tab2 + chr2R 19301022 intron Tab2 + chr2R 19301072 intron Tab2 + chr2R_5_19300001 chr2R_19300001 RAL-310 390 chr2R 19702002 19702029 chr2R 19702083 19702105 9 78 4.5 2.0 3.2 2.1 103 chr2R 19702002 intergenic not near genes chr2R 19702054 intergenic not near genes chr2R 19702105 intergenic not near genes chr2R_9_19700001 chr2R_19700001 RAL-310 391 chr2R 19776600 19776627 chr2R 19779923 19779949 jockey 4 3322 2.0 4.0 3.0 1.0 3349 chr2R 19776600 intergenic not near genes chr2R 19778274 intergenic not near genes chr2R 19779949 intergenic not near genes chr2R_4_19775001 chr2R_19775001 RAL-310 392 chr2R 19807676 19807702 chr2R 19807758 19807784 4 82 1.5 2.5 2.0 1.3 108 chr2R 19807676 intergenic not near genes chr2R 19807730 intergenic not near genes chr2R 19807784 intergenic not near genes chr2R_4_19805001 chr2R_19805001 RAL-310 393 chr2R 19815534 19815563 chr2R 19815628 19815655 8 94 0.5 3.0 1.8 2.9 121 chr2R 19815534 intergenic Obp56h + chr2R 19815594 exon Obp56h + chr2R 19815655 intron Obp56h + chr2R_8_19815001 chr2R_19815001 RAL-310 394 chr2R 19914853 19914869 chr2R 19922265 19922280 mdg1 4 7412 0.5 0.5 0.5 2.7 7427 chr2R 19914853 intergenic not near genes chr2R 19918566 intergenic not near genes chr2R 19922280 intergenic not near genes chr2R_4_19915001 chr2R_19915001 RAL-310 395 chr2R 19957454 19957458 chr2R 19962636 19962660 copia 5 5198 3.5 2.5 3.0 1.2 5206 chr2R 19957454 intergenic CG44623 + chr2R 19960057 intergenic not near genes chr2R 19962660 intergenic not near genes chr2R_5_19960001 chr2R_19960001 RAL-310 396 chr2R 20151965 20151991 chr2R 20152050 20152076 5 83 4.0 4.0 4.0 1.0 111 chr2R 20151965 intergenic not near genes chr2R 20152020 intergenic not near genes chr2R 20152076 intergenic not near genes chr2R_5_20150001 chr2R_20150001 RAL-310 397 chr2R 20326766 20326788 chr2R 20326842 20326865 8 74 5.0 1.5 3.2 1.9 99 chr2R 20326766 5` UTR MED8 - chr2R 20326816 intergenic MED8 -,CG8929 + chr2R 20326865 intergenic MED8 -,CG8929 + chr2R_8_20325001 chr2R_20325001 RAL-310 398 chr2R 20382336 20382357 chr2R 20382421 20382426 5 81 4.5 3.0 3.8 1.0 90 chr2R 20382336 intergenic not near genes chr2R 20382381 intergenic not near genes chr2R 20382426 intergenic not near genes chr2R_5_20380001 chr2R_20380001 RAL-310 399 chr2R 20523037 20523066 chr2R 20523148 20523177 10 108 2.5 3.5 3.0 2.5 140 chr2R 20523037 intergenic not near genes chr2R 20523107 intergenic not near genes chr2R 20523177 intergenic not near genes chr2R_10_20520001 chr2R_20520001 RAL-310 400 chr2R 20739440 20739477 chr2R 20744208 20744227 F-element 6 4763 2.0 3.0 2.5 1.7 4787 chr2R 20739440 intron dpr + chr2R 20741834 intron dpr + chr2R 20744227 intron dpr + chr2R_6_20740001 chr2R_20740001 RAL-310 401 chr2R 20862344 20862349 chr2R 20862434 20862439 4 90 2.0 6.5 4.2 0.8 95 chr2R 20862344 intergenic not near genes chr2R 20862392 intergenic not near genes chr2R 20862439 intergenic not near genes chr2R_4_20860001 chr2R_20860001 RAL-310 402 chr2R 20863118 20863140 chr2R 20863203 20863221 6 80 2.5 1.5 2.0 2.0 103 chr2R 20863118 intergenic not near genes chr2R 20863170 intergenic not near genes chr2R 20863221 intergenic not near genes chr2R_6_20860001 chr2R_20860001 RAL-310 403 chr2R 20962905 20962938 chr2R 20963003 20963036 9 96 2.0 3.5 2.8 2.4 131 chr2R 20962905 intergenic not near genes chr2R 20962970 intergenic not near genes chr2R 20963036 intergenic not near genes chr2R_9_20960001 chr2R_20960001 RAL-310 404 chr2R 21040858 21040890 chr2R 21040934 21040966 9 76 4.0 3.5 3.8 1.9 108 chr2R 21040858 intergenic not near genes chr2R 21040912 intergenic not near genes chr2R 21040966 intergenic not near genes chr2R_9_21040001 chr2R_21040001 RAL-310 405 chr2R 21148993 21149007 chr2R 21149128 21149141 6 134 0.0 7.5 3.8 1.2 148 chr2R 21148993 3` UTR CG30389 - chr2R 21149067 3` UTR CG30389 - chr2R 21149141 3` UTR CG30389 - chr2R_6_21145001 chr2R_21145001 RAL-310 406 chr2R 21151117 21151138 chr2R 21153749 21153771 opus 5 2633 3.0 2.0 2.5 1.4 2654 chr2R 21151117 intron CG30389 - chr2R 21152444 intron CG30389 - chr2R 21153771 intron CG30389 - chr2R_5_21150001 chr2R_21150001 RAL-310 407 chr2R 21178665 21178684 chr2R 21178743 21178762 4 78 3.5 0.0 1.8 1.4 97 chr2R 21178665 intron Pu + chr2R 21178714 intron Pu + chr2R 21178762 intron Pu + chr2R_4_21175001 chr2R_21175001 RAL-310 408 chr2R 21472314 21472329 chr2R 21472392 21472406 4 77 3.0 2.5 2.8 1.1 92 chr2R 21472314 intron Sdc - chr2R 21472360 intron Sdc - chr2R 21472406 intron Sdc - chr2R_4_21470001 chr2R_21470001 RAL-310 409 chr2R 21664941 21664975 chr2R 21665115 21665149 4 172 0.5 1.0 0.8 2.2 208 chr2R 21664941 exon,5` UTR CG42362 +,CG42363 + chr2R 21665045 3` UTR,5` UTR CG42362 +,CG42363 + chr2R 21665149 intron,intron CG42362 +,CG42363 + chr2R_4_21665001 chr2R_21665001 RAL-310 410 chr2R 21700154 21700184 chr2R 21700240 21700248 10 79 0.0 2.5 1.2 4.5 94 chr2R 21700154 intron HmgZ - chr2R 21700201 intron HmgZ - chr2R 21700248 intron HmgZ - chr2R_10_21700001 chr2R_21700001 RAL-310 411 chr2R 21738290 21738311 chr2R 21747435 21747471 roo 7 9151 1.0 2.0 1.5 2.8 9181 chr2R 21738290 intergenic not near genes chr2R 21742880 intergenic not near genes chr2R 21747471 intergenic not near genes chr2R_7_21740001 chr2R_21740001 RAL-310 412 chr2R 21809531 21809546 chr2R 21817771 21817780 roo 5 8239 1.0 4.5 2.8 1.3 8249 chr2R 21809531 intergenic not near genes chr2R 21813656 intergenic not near genes chr2R 21817780 intergenic not near genes chr2R_5_21810001 chr2R_21810001 RAL-310 413 chr2R 21847495 21847527 chr2R 21847613 21847632 9 115 0.0 5.5 2.8 2.4 137 chr2R 21847495 intergenic not near genes chr2R 21847564 intergenic not near genes chr2R 21847632 intergenic not near genes chr2R_9_21845001 chr2R_21845001 RAL-310 414 chr2R 21894903 21894914 chr2R 21894979 21894989 4 76 2.0 4.0 3.0 1.0 86 chr2R 21894903 intron Fili + chr2R 21894946 intron Fili + chr2R 21894989 intron Fili + chr2R_4_21890001 chr2R_21890001 RAL-310 415 chr2R 21905423 21905449 chr2R 21905917 21905938 7 491 2.0 2.5 2.2 2.2 515 chr2R 21905423 intron Fili + chr2R 21905680 intron Fili + chr2R 21905938 intron Fili + chr2R_7_21905001 chr2R_21905001 RAL-310 416 chr2R 21932250 21932264 chr2R 21932327 21932341 4 76 6.0 2.5 4.2 0.8 91 chr2R 21932250 intron Fili + chr2R 21932296 intron Fili + chr2R 21932341 intron Fili + chr2R_4_21930001 chr2R_21930001 RAL-310 417 chr2R 22003107 22003122 chr2R 22003191 22003206 5 85 3.0 4.5 3.8 1.0 99 chr2R 22003107 intron CG34370 - chr2R 22003156 intron CG34370 - chr2R 22003206 intron CG34370 - chr2R_5_22000001 chr2R_22000001 RAL-310 418 chr2R 22072693 22072716 chr2R 22072770 22072798 6 82 1.0 4.5 2.8 1.6 105 chr2R 22072693 intron CG11474 - chr2R 22072746 intron CG11474 - chr2R 22072798 exon CG11474 - chr2R_6_22070001 chr2R_22070001 RAL-310 419 chr2R 22290083 22290104 chr2R 22290167 22290180 4 82 0.0 0.0 0.0 4.0 97 chr2R 22290083 intergenic not near genes chr2R 22290132 intergenic not near genes chr2R 22290180 intergenic not near genes chr2R_4_22290001 chr2R_22290001 RAL-310 420 chr2R 22525759 22525782 chr2R 22529317 22529341 jockey 5 3559 2.0 3.0 2.5 1.4 3582 chr2R 22525759 intron px - chr2R 22527550 intron px - chr2R 22529341 intron px - chr2R_5_22525001 chr2R_22525001 RAL-310 421 chr2R 22541703 22541705 chr2R 22542130 22542131 4 426 3.0 3.0 3.0 1.0 428 chr2R 22541703 intron px - chr2R 22541917 intron px - chr2R 22542131 intron px - chr2R_4_22540001 chr2R_22540001 RAL-310 422 chr2R 22575659 22575690 chr2R 22575738 22575767 8 76 1.5 0.5 1.0 4.0 108 chr2R 22575659 intron dnr1 - chr2R 22575713 intron dnr1 - chr2R 22575767 intron dnr1 - chr2R_8_22575001 chr2R_22575001 RAL-310 423 chr2R 22723244 22723266 chr2R 22723320 22723320 7 72 0.0 4.0 2.0 2.3 76 chr2R 22723244 intron jbug - chr2R 22723282 intron jbug - chr2R 22723320 intron jbug - chr2R_7_22720001 chr2R_22720001 RAL-310 424 chr2R 22774964 22775000 chr2R 22775382 22775386 jockey 13 414 3.5 1.5 2.5 3.7 422 chr2R 22774964 intron CG42260 - chr2R 22775175 intron CG42260 - chr2R 22775386 intron CG42260 - chr2R_13_22775001 chr2R_22775001 RAL-310 425 chr2R 22971501 22971526 chr2R 22971580 22971604 4 79 2.5 2.5 2.5 1.1 103 chr2R 22971501 intergenic not near genes chr2R 22971552 intergenic not near genes chr2R 22971604 intergenic not near genes chr2R_4_22970001 chr2R_22970001 RAL-310 426 chr2R 23054009 23054030 chr2R 23054079 23054108 5 76 0.5 2.0 1.2 2.3 99 chr2R 23054009 intergenic not near genes chr2R 23054058 intergenic not near genes chr2R 23054108 intergenic not near genes chr2R_5_23050001 chr2R_23050001 RAL-310 427 chr2R 23146178 23146182 chr2R 23146268 23146271 4 90 6.0 3.0 4.5 0.7 93 chr2R 23146178 intergenic not near genes chr2R 23146224 intergenic not near genes chr2R 23146271 intergenic not near genes chr2R_4_23145001 chr2R_23145001 RAL-310 428 chr2R 23146189 23146205 chr2R 23146263 23146292 8 86 4.0 3.0 3.5 1.8 103 chr2R 23146189 intergenic not near genes chr2R 23146240 intergenic not near genes chr2R 23146292 intergenic not near genes chr2R_8_23145001 chr2R_23145001 RAL-310 429 chr2R 23175038 23175057 chr2R 23175115 23175122 5 73 5.5 5.0 5.2 0.8 84 chr2R 23175038 intron CG34371 - chr2R 23175080 intron CG34371 - chr2R 23175122 intron CG34371 - chr2R_5_23175001 chr2R_23175001 RAL-310 430 chr2R 23258376 23258388 chr2R 23259502 23259515 4 1127 3.5 0.5 2.0 1.3 1139 chr2R 23258376 intergenic not near genes chr2R 23258946 intergenic not near genes chr2R 23259515 intergenic not near genes chr2R_4_23255001 chr2R_23255001 RAL-310 431 chr2R 23276296 23276330 chr2R 23276381 23276408 11 82 5.5 5.0 5.2 1.8 112 chr2R 23276296 intergenic not near genes chr2R 23276352 intergenic not near genes chr2R 23276408 intergenic not near genes chr2R_11_23275001 chr2R_23275001 RAL-310 432 chr2R 23356295 23356305 chr2R 23356373 23356382 4 81 3.0 3.5 3.2 1.0 87 chr2R 23356295 3` UTR Rpi + chr2R 23356338 3` UTR Rpi + chr2R 23356382 3` UTR,3` UTR Rpi +,CG3500 - chr2R_4_23355001 chr2R_23355001 RAL-310 433 chr2R 23423738 23423772 chr2R 23423896 23423930 5 156 1.0 2.0 1.5 2.0 192 chr2R 23423738 intron CG9815 - chr2R 23423834 intron CG9815 - chr2R 23423930 intron CG9815 - chr2R_5_23420001 chr2R_23420001 RAL-310 434 chr2R 23508923 23508934 chr2R 23509040 23509050 4 117 1.5 0.5 1.0 2.0 127 chr2R 23508923 intergenic not near genes chr2R 23508986 intergenic not near genes chr2R 23509050 intergenic not near genes chr2R_4_23505001 chr2R_23505001 RAL-310 435 chr2R 23653974 23653991 chr2R 23654051 23654068 5 77 7.0 0.0 3.5 1.1 94 chr2R 23653974 3` UTR retn + chr2R 23654021 3` UTR retn + chr2R 23654068 3` UTR retn + chr2R_5_23650001 chr2R_23650001 RAL-310 436 chr2R 23705644 23705656 chr2R 23710923 23710936 4 5279 25.0 26.5 25.8 0.1 5292 chr2R 23705644 exon l(2)not - chr2R 23708290 intron,exon l(2)not -,l(2)tid + chr2R 23710936 intergenic not near genes chr2R_4_23705001 chr2R_23705001 RAL-310 437 chr2R 23784481 23784507 chr2R 23784559 23784585 5 76 0.0 2.5 1.2 2.3 104 chr2R 23784481 intron CG9850 - chr2R 23784533 intron CG9850 - chr2R 23784585 intron CG9850 - chr2R_5_23780001 chr2R_23780001 RAL-310 438 chr2R 23802286 23802311 chr2R 23802389 23802395 5 98 2.5 5.5 4.0 1.0 109 chr2R 23802286 3` UTR CG30177 + chr2R 23802340 3` UTR CG30177 + chr2R 23802395 3` UTR CG30177 + chr2R_5_23800001 chr2R_23800001 RAL-310 439 chr2R 23926834 23926864 chr2R 23926916 23926945 6 81 2.0 1.5 1.8 2.1 111 chr2R 23926834 3` UTR,3` UTR Ca-P60A -,CG2812 + chr2R 23926890 3` UTR,3` UTR Ca-P60A -,CG2812 + chr2R 23926945 3` UTR Ca-P60A - chr2R_6_23925001 chr2R_23925001 RAL-310 440 chr2R 24031381 24031413 chr2R 24031465 24031465 8 80 3.0 1.5 2.2 2.5 84 chr2R 24031381 5` UTR CG30172 - chr2R 24031423 5` UTR CG30172 - chr2R 24031465 intergenic CG30172 -,Chi - chr2R_8_24030001 chr2R_24030001 RAL-310 441 chr2R 24278323 24278362 chr2R 24278405 24278440 12 79 0.5 5.5 3.0 3.0 117 chr2R 24278323 intron nvy + chr2R 24278382 intron nvy + chr2R 24278440 intron nvy + chr2R_12_24275001 chr2R_24275001 RAL-310 442 chr2R 24320187 24320203 chr2R 24320262 24320280 5 76 0.5 1.0 0.8 2.8 93 chr2R 24320187 intergenic not near genes chr2R 24320234 intergenic not near genes chr2R 24320280 intergenic not near genes chr2R_5_24320001 chr2R_24320001 RAL-310 443 chr2R 24366254 24366276 chr2R 24366341 24366363 5 87 0.5 2.0 1.2 2.3 109 chr2R 24366254 intron,intron bs +,CR44811 - chr2R 24366308 intron,intron bs +,CR44811 - chr2R 24366363 intron,intron bs +,CR44811 - chr2R_5_24365001 chr2R_24365001 RAL-310 444 chr2R 24385649 24385657 chr2R 24385755 24385764 8 106 3.5 6.0 4.8 1.4 115 chr2R 24385649 intron mAChR-A - chr2R 24385706 intron mAChR-A - chr2R 24385764 intron mAChR-A - chr2R_8_24385001 chr2R_24385001 RAL-310 445 chr2R 24470374 24470391 chr2R 24470467 24470470 4 90 2.0 4.5 3.2 1.0 96 chr2R 24470374 intron CG13579 + chr2R 24470422 intron CG13579 + chr2R 24470470 intron CG13579 + chr2R_4_24470001 chr2R_24470001 RAL-310 446 chr2R 24509317 24509339 chr2R 24509402 24509405 8 82 1.0 4.0 2.5 2.3 88 chr2R 24509317 intergenic Letm1 - chr2R 24509361 intergenic Letm1 - chr2R 24509405 intergenic Letm1 - chr2R_8_24505001 chr2R_24505001 RAL-310 447 chr2R 24520612 24520643 chr2R 24520694 24520726 9 82 4.0 2.0 3.0 2.2 114 chr2R 24520612 exon Ir60d + chr2R 24520669 exon Ir60d + chr2R 24520726 exon Ir60d + chr2R_9_24520001 chr2R_24520001 RAL-310 448 chr2R 24553643 24553652 chr2R 24553726 24553751 5 90 5.0 4.0 4.5 0.9 108 chr2R 24553643 intron,intron CG4622 -,ITP + chr2R 24553697 intron,intron CG4622 -,ITP + chr2R 24553751 intron,intron CG4622 -,ITP + chr2R_5_24550001 chr2R_24550001 RAL-310 449 chr2R 24584342 24584365 chr2R 24584424 24584447 9 81 2.5 2.0 2.2 2.8 105 chr2R 24584342 intron pio + chr2R 24584394 intron pio + chr2R 24584447 intron pio + chr2R_9_24580001 chr2R_24580001 RAL-310 450 chr2R 24592949 24592958 chr2R 24593042 24593051 4 92 9.0 3.5 6.2 0.6 102 chr2R 24592949 intron pio + chr2R 24593000 intron pio + chr2R 24593051 intron pio + chr2R_4_24590001 chr2R_24590001 RAL-310 451 chr2R 24592968 24592977 chr2R 24593041 24593070 4 88 5.0 3.5 4.2 0.8 102 chr2R 24592968 intron pio + chr2R 24593019 intron pio + chr2R 24593070 intron pio + chr2R_4_24590001 chr2R_24590001 RAL-310 452 chr2R 24647591 24647618 chr2R 24655147 24655173 412 7 7556 2.5 5.0 3.8 1.5 7582 chr2R 24647591 intergenic not near genes chr2R 24651382 intergenic not near genes chr2R 24655173 intergenic not near genes chr2R_7_24650001 chr2R_24650001 RAL-310 453 chr2R 24719797 24719826 chr2R 24719909 24719938 9 107 3.5 4.0 3.8 1.9 141 chr2R 24719797 intron Mid1 - chr2R 24719868 intron Mid1 - chr2R 24719938 intron Mid1 - chr2R_9_24715001 chr2R_24715001 RAL-310 454 chr2R 24763612 24763643 chr2R 24765588 24765589 G2 8 1970 2.5 6.5 4.5 1.5 1977 chr2R 24763612 exon CG3894 + chr2R 24764600 intron CG3894 + chr2R 24765589 exon CG3894 + chr2R_8_24760001 chr2R_24760001 RAL-310 455 chr2R 24883880 24883903 chr2R 24883963 24883986 5 82 1.5 1.0 1.2 2.3 106 chr2R 24883880 intron NKAIN + chr2R 24883933 intron NKAIN + chr2R 24883986 intron NKAIN + chr2R_5_24880001 chr2R_24880001 RAL-310 456 chr2R 25004892 25004923 chr2R 25004970 25005001 8 78 1.5 3.0 2.2 2.5 109 chr2R 25004892 intron zip - chr2R 25004946 intron zip - chr2R 25005001 intron zip - chr2R_8_25000001 chr2R_25000001 RAL-310 457 chr2R 25014547 25014575 chr2R 25014619 25014649 8 73 1.0 3.5 2.2 2.5 102 chr2R 25014547 intron uzip + chr2R 25014598 intron uzip + chr2R 25014649 intron uzip + chr2R_8_25010001 chr2R_25010001 RAL-310 458 chr2R 25018342 25018371 chr2R 25018443 25018470 13 97 3.0 5.5 4.2 2.5 128 chr2R 25018342 intron uzip + chr2R 25018406 intron uzip + chr2R 25018470 intron uzip + chr2R_13_25015001 chr2R_25015001 RAL-310 459 chr2R 25101291 25101306 chr2R 25101393 25101396 6 100 2.0 3.5 2.8 1.6 105 chr2R 25101291 intron lov - chr2R 25101344 intron lov - chr2R 25101396 intron lov - chr2R_6_25100001 chr2R_25100001 RAL-310 460 chr2R 25141649 25141679 chr2R 25159339 25159369 roo 5 17689 1.5 2.0 1.8 1.8 17720 chr2R 25141649 intergenic not near genes chr2R 25150509 intergenic not near genes chr2R 25159369 intergenic not near genes chr2R_5_25150001 chr2R_25150001 RAL-310 461 chr2R 25251819 25251843 chr2R 25253130 25253157 INE-1 4 1313 9.5 10.0 9.8 0.4 1338 chr2R 25251819 intron CG9380 - chr2R 25252488 intron,intron CG9380 -,CG30428 + chr2R 25253157 intron,intron CG9380 -,CG30428 + chr2R_4_25250001 chr2R_25250001 RAL-310 462 chr3L 68981 69014 chr3L 69068 69101 9 84 4.5 3.0 3.8 1.9 120 chr3L 68981 3` UTR Lsp1gamma + chr3L 69041 intergenic Lsp1gamma +,CR44510 + chr3L 69101 intergenic CR44510 +,Lsp1gamma + chr3L_9_65001 chr3L_65001 RAL-310 463 chr3L 88747 88776 chr3L 90664 90695 8 1919 0.5 2.0 1.2 3.6 1948 chr3L 88747 intergenic not near genes chr3L 89721 intergenic not near genes chr3L 90695 intergenic not near genes chr3L_8_85001 chr3L_85001 RAL-310 464 chr3L 110223 110239 chr3L 119389 119406 roo 4 9164 2.5 1.5 2.0 1.3 9183 chr3L 110223 intergenic not near genes chr3L 114814 intergenic not near genes chr3L 119406 intergenic not near genes chr3L_4_110001 chr3L_110001 RAL-310 465 chr3L 227523 227553 chr3L 228684 228700 6 1154 3.0 3.0 3.0 1.5 1177 chr3L 227523 5` UTR CR42862 + chr3L 228112 5` UTR CR42862 + chr3L 228700 5` UTR CR42862 + chr3L_6_225001 chr3L_225001 RAL-310 466 chr3L 402692 402715 chr3L 409741 409768 297 5 7052 4.5 3.5 4.0 1.0 7076 chr3L 402692 intergenic not near genes chr3L 406230 intergenic not near genes chr3L 409768 intergenic not near genes chr3L_5_405001 chr3L_405001 RAL-310 467 chr3L 413997 414022 chr3L 414115 414139 4 118 2.0 2.5 2.2 1.2 142 chr3L 413997 intergenic not near genes chr3L 414068 intergenic not near genes chr3L 414139 intergenic not near genes chr3L_4_410001 chr3L_410001 RAL-310 468 chr3L 491653 491673 chr3L 491735 491751 6 81 2.5 2.0 2.2 1.9 98 chr3L 491653 intron klar - chr3L 491702 intron klar - chr3L 491751 intron klar - chr3L_6_490001 chr3L_490001 RAL-310 469 chr3L 514280 514306 chr3L 514357 514377 7 74 0.0 4.5 2.2 2.2 97 chr3L 514280 intron klar - chr3L 514328 intron klar - chr3L 514377 intron klar - chr3L_7_510001 chr3L_510001 RAL-310 470 chr3L 559522 559552 chr3L 559911 559916 12 384 2.0 1.5 1.8 4.3 394 chr3L 559522 intron hipk + chr3L 559719 intron hipk + chr3L 559916 intron hipk + chr3L_12_555001 chr3L_555001 RAL-310 471 chr3L 627972 627996 chr3L 628105 628130 4 133 20.5 25.0 22.8 0.2 158 chr3L 627972 intergenic CR43334 + chr3L 628051 intergenic CR43334 + chr3L 628130 intergenic CR43334 + chr3L_4_625001 chr3L_625001 RAL-310 472 chr3L 698113 698142 chr3L 698286 698313 6 172 0.0 3.5 1.8 2.1 200 chr3L 698113 intron CG13894 - chr3L 698213 intron CG13894 - chr3L 698313 intron CG13894 - chr3L_6_695001 chr3L_695001 RAL-310 473 chr3L 789920 789947 chr3L 790405 790424 roo 5 478 0.5 4.0 2.2 1.6 504 chr3L 789920 intergenic not near genes chr3L 790172 intergenic not near genes chr3L 790424 intergenic not near genes chr3L_5_790001 chr3L_790001 RAL-310 474 chr3L 858002 858026 chr3L 866482 866507 Tirant 4 8476 3.0 1.5 2.2 1.2 8505 chr3L 858002 intergenic not near genes chr3L 862254 intergenic not near genes chr3L 866507 5` UTR CG12502 + chr3L_4_860001 chr3L_860001 RAL-310 475 chr3L 925176 925202 chr3L 932602 932628 mdg1 9 7422 2.0 0.5 1.2 4.1 7452 chr3L 925176 intron Glut1 + chr3L 928902 intron Glut1 + chr3L 932628 intron Glut1 + chr3L_9_925001 chr3L_925001 RAL-310 476 chr3L 933911 933944 chr3L 934013 934047 6 103 1.5 1.5 1.5 2.4 136 chr3L 933911 intron Glut1 + chr3L 933979 intron Glut1 + chr3L 934047 intron Glut1 + chr3L_6_930001 chr3L_930001 RAL-310 477 chr3L 939772 939801 chr3L 940893 940921 jockey 6 1120 5.5 1.5 3.5 1.3 1149 chr3L 939772 intron Glut1 + chr3L 940346 intron Glut1 + chr3L 940921 intron Glut1 + chr3L_6_940001 chr3L_940001 RAL-310 478 chr3L 1003053 1003081 chr3L 1003129 1003158 8 76 3.0 3.0 3.0 2.0 105 chr3L 1003053 intron trio - chr3L 1003106 intron trio - chr3L 1003158 intron trio - chr3L_8_1000001 chr3L_1000001 RAL-310 479 chr3L 1031589 1031605 chr3L 1031652 1031681 4 72 8.0 3.0 5.5 0.6 92 chr3L 1031589 intron trio - chr3L 1031635 intron trio - chr3L 1031681 intron trio - chr3L_4_1030001 chr3L_1030001 RAL-310 480 chr3L 1040549 1040578 chr3L 1040633 1040662 5 84 4.5 4.5 4.5 0.9 113 chr3L 1040549 intron bab1 - chr3L 1040606 intron bab1 - chr3L 1040662 intron bab1 - chr3L_5_1040001 chr3L_1040001 RAL-310 481 chr3L 1047365 1047377 chr3L 1055165 1055178 412 4 7804 1.5 1.0 1.2 1.8 7813 chr3L 1047365 intron bab1 - chr3L 1051272 intron bab1 - chr3L 1055178 intron bab1 - chr3L_4_1050001 chr3L_1050001 RAL-310 482 chr3L 1154135 1154163 chr3L 1163283 1163310 roo 5 9148 1.0 3.5 2.2 1.6 9175 chr3L 1154135 intron bab2 - chr3L 1158722 intron bab2 - chr3L 1163310 intron bab2 - chr3L_5_1155001 chr3L_1155001 RAL-310 483 chr3L 1219596 1219624 chr3L 1227328 1227350 412 12 7732 1.5 2.0 1.8 4.3 7754 chr3L 1219596 intron mwh + chr3L 1223473 intron mwh + chr3L 1227350 intron mwh + chr3L_12_1220001 chr3L_1220001 RAL-310 484 chr3L 1285213 1285240 chr3L 1285292 1285316 5 75 1.5 2.5 2.0 1.7 103 chr3L 1285213 intron CG32333 + chr3L 1285264 intron CG32333 + chr3L 1285316 intron CG32333 + chr3L_5_1285001 chr3L_1285001 RAL-310 485 chr3L 1371732 1371739 chr3L 1371817 1371825 4 85 5.0 5.5 5.2 0.6 93 chr3L 1371732 intron,intron Ptp61F -,ru + chr3L 1371778 intron,intron Ptp61F -,ru + chr3L 1371825 intron,intron Ptp61F -,ru + chr3L_4_1370001 chr3L_1370001 RAL-310 486 chr3L 1371743 1371751 chr3L 1371811 1371832 6 77 3.5 4.5 4.0 1.2 89 chr3L 1371743 intron,intron Ptp61F -,ru + chr3L 1371788 intron,intron Ptp61F -,ru + chr3L 1371832 intron,intron Ptp61F -,ru + chr3L_6_1370001 chr3L_1370001 RAL-310 487 chr3L 1415775 1415803 chr3L 1415856 1415879 8 80 4.0 3.5 3.8 1.7 104 chr3L 1415775 intron Ptp61F - chr3L 1415827 intron Ptp61F - chr3L 1415879 intron Ptp61F - chr3L_8_1415001 chr3L_1415001 RAL-310 488 chr3L 1536859 1536862 chr3L 1536943 1536946 4 84 4.0 1.0 2.5 1.1 87 chr3L 1536859 intergenic CG12091 -,CG7852 + chr3L 1536902 intergenic CG12091 -,CG7852 + chr3L 1536946 intergenic CG12091 -,CG7852 + chr3L_4_1535001 chr3L_1535001 RAL-310 489 chr3L 1805697 1805712 chr3L 1805871 1805886 4 174 3.0 1.5 2.2 1.2 189 chr3L 1805697 exon CG42676 + chr3L 1805792 intron CG42676 + chr3L 1805886 intron CG42676 + chr3L_4_1805001 chr3L_1805001 RAL-310 490 chr3L 1842192 1842220 chr3L 1842290 1842318 10 97 1.5 0.5 1.0 5.0 126 chr3L 1842192 intergenic Cpr62Bc - chr3L 1842255 intergenic Cpr62Bc - chr3L 1842318 intergenic Cpr62Bc - chr3L_10_1840001 chr3L_1840001 RAL-310 491 chr3L 1923015 1923041 chr3L 1923098 1923131 6 89 1.5 3.0 2.2 1.9 116 chr3L 1923015 intron Dbx + chr3L 1923073 intron Dbx + chr3L 1923131 intron Dbx + chr3L_6_1920001 chr3L_1920001 RAL-310 492 chr3L 2139206 2139226 chr3L 2139286 2139307 4 80 2.0 3.0 2.5 1.1 101 chr3L 2139206 intron zormin - chr3L 2139256 intron zormin - chr3L 2139307 intron zormin - chr3L_4_2135001 chr3L_2135001 RAL-310 493 chr3L 2303581 2303594 chr3L 2303701 2303732 7 134 2.5 2.5 2.5 2.0 151 chr3L 2303581 intergenic not near genes chr3L 2303656 intergenic not near genes chr3L 2303732 intergenic not near genes chr3L_7_2300001 chr3L_2300001 RAL-310 494 chr3L 2308007 2308035 chr3L 2308113 2308140 5 106 2.0 4.0 3.0 1.2 133 chr3L 2308007 intergenic not near genes chr3L 2308074 intergenic not near genes chr3L 2308140 intergenic not near genes chr3L_5_2305001 chr3L_2305001 RAL-310 495 chr3L 2479008 2479027 chr3L 2479101 2479124 8 93 2.5 2.0 2.2 2.5 116 chr3L 2479008 intron CG45186 + chr3L 2479066 intron CG45186 + chr3L 2479124 intron CG45186 + chr3L_8_2475001 chr3L_2475001 RAL-310 496 chr3L 2479469 2479482 chr3L 2479562 2479574 5 92 0.0 4.5 2.2 1.6 105 chr3L 2479469 intron CG45186 + chr3L 2479522 intron CG45186 + chr3L 2479574 intron CG45186 + chr3L_5_2475001 chr3L_2475001 RAL-310 497 chr3L 2533649 2533683 chr3L 2533731 2533732 8 76 2.0 3.5 2.8 2.1 83 chr3L 2533649 intron Spn - chr3L 2533690 intron Spn - chr3L 2533732 intron Spn - chr3L_8_2530001 chr3L_2530001 RAL-310 498 chr3L 2534617 2534642 chr3L 2534698 2534724 6 82 0.5 2.0 1.2 2.7 107 chr3L 2534617 intron Spn - chr3L 2534670 intron Spn - chr3L 2534724 exon Spn - chr3L_6_2530001 chr3L_2530001 RAL-310 499 chr3L 2683942 2683974 chr3L 2684018 2684050 5 75 1.5 1.0 1.2 2.3 108 chr3L 2683942 intron Fife - chr3L 2683996 intron Fife - chr3L 2684050 intron Fife - chr3L_5_2680001 chr3L_2680001 RAL-310 500 chr3L 2693818 2693849 chr3L 2693901 2693913 11 81 2.5 1.0 1.8 3.9 95 chr3L 2693818 intron Fife - chr3L 2693866 intron Fife - chr3L 2693913 intron Fife - chr3L_11_2690001 chr3L_2690001 RAL-310 501 chr3L 2795724 2795746 chr3L 2795847 2795869 4 123 2.5 2.0 2.2 1.2 145 chr3L 2795724 intron CG43444 - chr3L 2795796 intron CG43444 - chr3L 2795869 intron CG43444 - chr3L_4_2795001 chr3L_2795001 RAL-310 502 chr3L 2882115 2882136 chr3L 2882191 2882212 4 76 2.5 1.0 1.8 1.4 97 chr3L 2882115 intergenic not near genes chr3L 2882164 intergenic not near genes chr3L 2882212 intergenic not near genes chr3L_4_2880001 chr3L_2880001 RAL-310 503 chr3L 2966015 2966035 chr3L 2966097 2966117 5 82 0.5 3.0 1.8 1.8 102 chr3L 2966015 intergenic not near genes chr3L 2966066 intergenic not near genes chr3L 2966117 intergenic not near genes chr3L_5_2965001 chr3L_2965001 RAL-310 504 chr3L 3057252 3057279 chr3L 3057396 3057423 11 144 5.0 4.5 4.8 1.9 171 chr3L 3057252 exon CG32486 - chr3L 3057338 intron CG32486 - chr3L 3057423 intron CG32486 - chr3L_11_3055001 chr3L_3055001 RAL-310 505 chr3L 3061287 3061306 chr3L 3069867 3069889 Tirant 6 8579 5.0 0.0 2.5 1.7 8602 chr3L 3061287 intron CG32486 - chr3L 3065588 intron CG32486 - chr3L 3069889 intron CG32486 - chr3L_6_3065001 chr3L_3065001 RAL-310 506 chr3L 3102825 3102834 chr3L 3102911 3102917 4 84 4.5 5.5 5.0 0.7 92 chr3L 3102825 intron Cht7 - chr3L 3102871 intron Cht7 - chr3L 3102917 intron Cht7 - chr3L_4_3100001 chr3L_3100001 RAL-310 507 chr3L 3102835 3102849 chr3L 3102906 3102932 9 80 2.0 5.5 3.8 1.9 97 chr3L 3102835 intron Cht7 - chr3L 3102884 intron Cht7 - chr3L 3102932 intron Cht7 - chr3L_9_3100001 chr3L_3100001 RAL-310 508 chr3L 3281458 3281476 chr3L 3281937 3281957 Doc 6 487 1.0 4.5 2.8 1.6 499 chr3L 3281458 intron CG12017 + chr3L 3281708 intron CG12017 + chr3L 3281957 intron CG12017 + chr3L_6_3280001 chr3L_3280001 RAL-310 509 chr3L 3475084 3475110 chr3L 3475527 3475554 jockey 9 441 3.0 3.0 3.0 2.2 470 chr3L 3475084 intron CG42324 + chr3L 3475319 intron CG42324 + chr3L 3475554 intron CG42324 + chr3L_9_3475001 chr3L_3475001 RAL-310 510 chr3L 3524865 3524900 chr3L 3524946 3524980 8 81 1.0 5.0 3.0 2.0 115 chr3L 3524865 intron Eip63E + chr3L 3524922 intron Eip63E + chr3L 3524980 intron Eip63E + chr3L_8_3520001 chr3L_3520001 RAL-310 511 chr3L 3560987 3561001 chr3L 3561066 3561077 4 76 0.0 3.0 1.5 1.6 90 chr3L 3560987 intron Eip63E + chr3L 3561032 intron Eip63E + chr3L 3561077 intron Eip63E + chr3L_4_3560001 chr3L_3560001 RAL-310 512 chr3L 3601299 3601332 chr3L 3606607 3606643 copia 12 5309 4.0 1.5 2.8 3.2 5344 chr3L 3601299 intron Eip63E + chr3L 3603971 intron Eip63E + chr3L 3606643 intron Eip63E + chr3L_12_3600001 chr3L_3600001 RAL-310 513 chr3L 3656550 3656563 chr3L 3656728 3656746 5 181 0.0 3.5 1.8 1.8 196 chr3L 3656550 intergenic not near genes chr3L 3656648 intergenic not near genes chr3L 3656746 intergenic not near genes chr3L_5_3655001 chr3L_3655001 RAL-310 514 chr3L 3695496 3695523 chr3L 3695574 3695591 5 75 0.5 0.0 0.2 4.2 95 chr3L 3695496 intergenic not near genes chr3L 3695544 intergenic not near genes chr3L 3695591 intergenic not near genes chr3L_5_3695001 chr3L_3695001 RAL-310 515 chr3L 3774333 3774344 chr3L 3774408 3774420 4 76 0.5 0.0 0.2 3.3 87 chr3L 3774333 intron CG32264 - chr3L 3774376 intron CG32264 - chr3L 3774420 intron CG32264 - chr3L_4_3770001 chr3L_3770001 RAL-310 516 chr3L 4364204 4364234 chr3L 4364293 4364323 4 89 0.0 0.5 0.2 3.3 119 chr3L 4364204 intergenic Cip4 -,mRpS6 + chr3L 4364264 intergenic Cip4 -,mRpS6 + chr3L 4364323 intergenic Cip4 -,mRpS6 + chr3L_4_4360001 chr3L_4360001 RAL-310 517 chr3L 4416032 4416038 chr3L 4416108 4416117 4 79 5.0 5.0 5.0 0.7 85 chr3L 4416032 intron DOR + chr3L 4416074 intron DOR + chr3L 4416117 intron DOR + chr3L_4_4415001 chr3L_4415001 RAL-310 518 chr3L 4416040 4416058 chr3L 4416102 4416114 7 67 2.5 4.0 3.2 1.7 74 chr3L 4416040 intron DOR + chr3L 4416077 intron DOR + chr3L 4416114 intron DOR + chr3L_7_4415001 chr3L_4415001 RAL-310 519 chr3L 4597212 4597242 chr3L 4597294 4597312 7 79 2.0 4.5 3.2 1.7 100 chr3L 4597212 intron Src64B - chr3L 4597262 intron Src64B - chr3L 4597312 intron Src64B - chr3L_7_4595001 chr3L_4595001 RAL-310 520 chr3L 4607265 4607292 chr3L 4607356 4607360 7 86 1.0 1.0 1.0 3.5 95 chr3L 4607265 intron Src64B - chr3L 4607312 intron Src64B - chr3L 4607360 intron Src64B - chr3L_7_4605001 chr3L_4605001 RAL-310 521 chr3L 4714590 4714614 chr3L 4714668 4714692 5 78 1.0 1.5 1.2 2.3 102 chr3L 4714590 intron RhoGEF64C + chr3L 4714641 intron RhoGEF64C + chr3L 4714692 intron RhoGEF64C + chr3L_5_4710001 chr3L_4710001 RAL-310 522 chr3L 4868296 4868319 chr3L 4868432 4868456 7 136 0.0 2.5 1.2 3.2 160 chr3L 4868296 intron CG17150 + chr3L 4868376 intron CG17150 + chr3L 4868456 intron CG17150 + chr3L_7_4865001 chr3L_4865001 RAL-310 523 chr3L 4901125 4901150 chr3L 4907315 4907335 diver 7 6189 2.5 3.0 2.8 1.8 6210 chr3L 4901125 intergenic CG13704 + chr3L 4904230 intergenic not near genes chr3L 4907335 intergenic not near genes chr3L_7_4900001 chr3L_4900001 RAL-310 524 chr3L 4908907 4908931 chr3L 4909013 4909039 4 108 3.0 0.5 1.8 1.4 132 chr3L 4908907 intergenic not near genes chr3L 4908973 intergenic not near genes chr3L 4909039 intergenic not near genes chr3L_4_4905001 chr3L_4905001 RAL-310 525 chr3L 4991394 4991425 chr3L 4991518 4991549 8 123 2.0 5.0 3.5 1.8 155 chr3L 4991394 intron Con - chr3L 4991472 intron Con - chr3L 4991549 intron Con - chr3L_8_4990001 chr3L_4990001 RAL-310 526 chr3L 5250081 5250115 chr3L 5250159 5250192 6 78 1.0 2.0 1.5 2.4 111 chr3L 5250081 intron shep - chr3L 5250136 intron shep - chr3L 5250192 intron shep - chr3L_6_5250001 chr3L_5250001 RAL-310 527 chr3L 5388205 5388231 chr3L 5388527 5388555 8 322 5.5 5.0 5.2 1.3 350 chr3L 5388205 intergenic not near genes chr3L 5388380 intergenic not near genes chr3L 5388555 intergenic not near genes chr3L_8_5385001 chr3L_5385001 RAL-310 528 chr3L 5482940 5482979 chr3L 5483149 5483157 5 202 0.5 14.5 7.5 0.6 217 chr3L 5482940 exon CG4835 + chr3L 5483048 exon CG4835 + chr3L 5483157 exon CG4835 + chr3L_5_5480001 chr3L_5480001 RAL-310 529 chr3L 5926324 5926345 chr3L 5926506 5926535 BS 5 186 3.0 4.0 3.5 1.1 211 chr3L 5926324 intron Vap-33B + chr3L 5926430 intron Vap-33B + chr3L 5926535 intron Vap-33B + chr3L_5_5925001 chr3L_5925001 RAL-310 530 chr3L 5992596 5992616 chr3L 5992695 5992718 6 101 3.0 0.0 1.5 2.4 122 chr3L 5992596 intergenic not near genes chr3L 5992657 intergenic not near genes chr3L 5992718 intergenic not near genes chr3L_6_5990001 chr3L_5990001 RAL-310 531 chr3L 6001692 6001715 chr3L 6004392 6004415 jockey 6 2700 3.0 1.5 2.2 1.9 2723 chr3L 6001692 intron PVRAP + chr3L 6003054 intron PVRAP + chr3L 6004415 intron PVRAP + chr3L_6_6000001 chr3L_6000001 RAL-310 532 chr3L 6052655 6052667 chr3L 6052732 6052752 5 82 6.5 4.5 5.5 0.8 97 chr3L 6052655 exon Jon65Aii + chr3L 6052704 intron Jon65Aii + chr3L 6052752 exon Jon65Aii + chr3L_5_6050001 chr3L_6050001 RAL-310 533 chr3L 6159880 6159895 chr3L 6159970 6159971 4 86 3.0 1.5 2.2 1.2 91 chr3L 6159880 intergenic not near genes chr3L 6159926 intergenic not near genes chr3L 6159971 intergenic not near genes chr3L_4_6155001 chr3L_6155001 RAL-310 534 chr3L 6220913 6220936 chr3L 6230065 6230087 roo 4 9152 6.5 3.5 5.0 0.7 9174 chr3L 6220913 5` UTR pncr008:3L + chr3L 6225500 intergenic not near genes chr3L 6230087 intergenic not near genes chr3L_4_6225001 chr3L_6225001 RAL-310 535 chr3L 6267991 6268008 chr3L 6268089 6268106 4 98 2.0 0.0 1.0 2.0 115 chr3L 6267991 intergenic not near genes chr3L 6268048 intergenic not near genes chr3L 6268106 intergenic not near genes chr3L_4_6265001 chr3L_6265001 RAL-310 536 chr3L 6335015 6335038 chr3L 6335486 6335508 297 5 470 1.5 2.0 1.8 1.8 493 chr3L 6335015 intron CG13300 - chr3L 6335262 intron CG13300 - chr3L 6335508 intron CG13300 - chr3L_5_6335001 chr3L_6335001 RAL-310 537 chr3L 6524746 6524770 chr3L 6524842 6524866 8 96 3.0 0.5 1.8 2.9 120 chr3L 6524746 intron sfl + chr3L 6524806 intron sfl + chr3L 6524866 intron sfl + chr3L_8_6520001 chr3L_6520001 RAL-310 538 chr3L 6652078 6652108 chr3L 6652156 6652186 10 77 2.0 2.5 2.2 3.1 108 chr3L 6652078 intergenic not near genes chr3L 6652132 intergenic not near genes chr3L 6652186 intergenic not near genes chr3L_10_6650001 chr3L_6650001 RAL-310 539 chr3L 6798652 6798681 chr3L 6798926 6798955 4 274 1.0 2.0 1.5 1.6 303 chr3L 6798652 intergenic not near genes chr3L 6798804 intergenic not near genes chr3L 6798955 intergenic not near genes chr3L_4_6795001 chr3L_6795001 RAL-310 540 chr3L 6880493 6880522 chr3L 6880644 6880662 4 146 2.0 2.0 2.0 1.3 169 chr3L 6880493 intergenic not near genes chr3L 6880578 intergenic not near genes chr3L 6880662 intergenic not near genes chr3L_4_6880001 chr3L_6880001 RAL-310 541 chr3L 6974510 6974525 chr3L 6974591 6974611 7 96 0.0 3.5 1.8 2.5 101 chr3L 6974510 intron Galphai - chr3L 6974560 intron Galphai - chr3L 6974611 intron Galphai - chr3L_7_6970001 chr3L_6970001 RAL-310 542 chr3L 7033173 7033202 chr3L 7033251 7033282 17 78 2.5 5.5 4.0 3.4 109 chr3L 7033173 intron Mp + chr3L 7033228 intron Mp + chr3L 7033282 intron Mp + chr3L_17_7030001 chr3L_7030001 RAL-310 543 chr3L 7079610 7079632 chr3L 7079687 7079709 5 75 1.5 4.0 2.8 1.3 99 chr3L 7079610 intergenic not near genes chr3L 7079660 intergenic not near genes chr3L 7079709 intergenic not near genes chr3L_5_7075001 chr3L_7075001 RAL-310 544 chr3L 7091531 7091552 chr3L 7091607 7091609 4 70 5.5 2.5 4.0 0.8 78 chr3L 7091531 intergenic not near genes chr3L 7091570 intergenic not near genes chr3L 7091609 intergenic not near genes chr3L_4_7090001 chr3L_7090001 RAL-310 545 chr3L 7192423 7192444 chr3L 7192501 7192526 12 79 2.0 2.0 2.0 4.0 103 chr3L 7192423 intergenic not near genes chr3L 7192474 intergenic not near genes chr3L 7192526 intergenic not near genes chr3L_12_7190001 chr3L_7190001 RAL-310 546 chr3L 7216139 7216146 chr3L 7216193 7216224 4 69 2.5 3.0 2.8 1.1 85 chr3L 7216139 intergenic not near genes chr3L 7216182 intergenic not near genes chr3L 7216224 intergenic not near genes chr3L_4_7215001 chr3L_7215001 RAL-310 547 chr3L 7244943 7244963 chr3L 7245022 7245055 5 89 2.5 2.0 2.2 1.6 112 chr3L 7244943 exon mei-P22 + chr3L 7244999 exon mei-P22 + chr3L 7245055 exon mei-P22 + chr3L_5_7240001 chr3L_7240001 RAL-310 548 chr3L 7285456 7285469 chr3L 7285530 7285547 7 75 2.0 0.5 1.2 3.2 91 chr3L 7285456 intron unc-13-4A - chr3L 7285502 intron unc-13-4A - chr3L 7285547 intron unc-13-4A - chr3L_7_7285001 chr3L_7285001 RAL-310 549 chr3L 7377318 7377346 chr3L 7380419 7380448 297 4 3102 0.5 2.5 1.5 1.6 3130 chr3L 7377318 intron SMSr - chr3L 7378883 intron SMSr - chr3L 7380448 intron SMSr - chr3L_4_7375001 chr3L_7375001 RAL-310 550 chr3L 7450691 7450713 chr3L 7450774 7450796 5 81 1.5 0.5 1.0 2.5 105 chr3L 7450691 intron CG42458 + chr3L 7450744 intron CG42458 + chr3L 7450796 intron CG42458 + chr3L_5_7450001 chr3L_7450001 RAL-310 551 chr3L 7505788 7505797 chr3L 7505852 7505885 4 81 13.5 14.0 13.8 0.3 97 chr3L 7505788 exon CG7548 - chr3L 7505836 exon CG7548 - chr3L 7505885 exon CG7548 - chr3L_4_7505001 chr3L_7505001 RAL-310 552 chr3L 7508679 7508695 chr3L 7508763 7508777 5 83 0.5 2.0 1.2 2.3 98 chr3L 7508679 intergenic not near genes chr3L 7508728 intergenic not near genes chr3L 7508777 intergenic not near genes chr3L_5_7505001 chr3L_7505001 RAL-310 553 chr3L 7591897 7591926 chr3L 7591974 7592002 12 76 2.0 1.5 1.8 4.3 105 chr3L 7591897 intergenic not near genes chr3L 7591950 intergenic not near genes chr3L 7592002 intergenic not near genes chr3L_12_7590001 chr3L_7590001 RAL-310 554 chr3L 7793719 7793741 chr3L 7800770 7800793 297 5 7052 1.5 2.5 2.0 1.7 7074 chr3L 7793719 intron CG32369 - chr3L 7797256 intron CG32369 - chr3L 7800793 intron CG32369 - chr3L_5_7795001 chr3L_7795001 RAL-310 555 chr3L 7886519 7886545 chr3L 7889036 7889063 Stalker4 10 2517 0.5 0.5 0.5 6.7 2544 chr3L 7886519 intron CG32365 + chr3L 7887791 intron CG32365 + chr3L 7889063 intron CG32365 + chr3L_10_7885001 chr3L_7885001 RAL-310 556 chr3L 8295794 8295826 chr3L 8295952 8295967 6 151 3.0 2.0 2.5 1.7 173 chr3L 8295794 intergenic CG7201 - chr3L 8295880 intergenic not near genes chr3L 8295967 intergenic not near genes chr3L_6_8295001 chr3L_8295001 RAL-310 557 chr3L 8481800 8481806 chr3L 8490944 8490965 roo 5 9153 5.0 5.0 5.0 0.8 9165 chr3L 8481800 intron CG43163 - chr3L 8486382 intron CG43163 - chr3L 8490965 intron CG43163 - chr3L_5_8485001 chr3L_8485001 RAL-310 558 chr3L 8551748 8551774 chr3L 8551831 8551857 5 83 2.0 1.5 1.8 1.8 109 chr3L 8551748 intron rhea + chr3L 8551802 intron rhea + chr3L 8551857 intron rhea + chr3L_5_8550001 chr3L_8550001 RAL-310 559 chr3L 8580821 8580855 chr3L 8580907 8580938 10 84 3.5 4.5 4.0 2.0 117 chr3L 8580821 intron CG43078 + chr3L 8580880 intron CG43078 + chr3L 8580938 intron CG43078 + chr3L_10_8580001 chr3L_8580001 RAL-310 560 chr3L 8791273 8791291 chr3L 8796693 8796711 I-element 5 5419 8.5 1.0 4.8 0.9 5438 chr3L 8791273 exon Fhos + chr3L 8793992 intron Fhos + chr3L 8796711 intron Fhos + chr3L_5_8790001 chr3L_8790001 RAL-310 561 chr3L 8950868 8950899 chr3L 8950947 8950964 7 74 2.0 3.5 2.8 1.8 96 chr3L 8950868 intron,intron CG43783 -,orb2 - chr3L 8950916 intron,intron CG43783 -,orb2 - chr3L 8950964 intron,intron CG43783 -,orb2 - chr3L_7_8950001 chr3L_8950001 RAL-310 562 chr3L 9022067 9022097 chr3L 9022157 9022187 9 88 2.0 2.0 2.0 3.0 120 chr3L 9022067 intergenic not near genes chr3L 9022127 intergenic not near genes chr3L 9022187 intergenic not near genes chr3L_9_9020001 chr3L_9020001 RAL-310 563 chr3L 9076942 9076949 chr3L 9084493 9084509 412 6 7558 4.5 1.5 3.0 1.5 7567 chr3L 9076942 exon Tequila + chr3L 9080726 intron Tequila + chr3L 9084509 exon Tequila + chr3L_6_9080001 chr3L_9080001 RAL-310 564 chr3L 9130559 9130581 chr3L 9134319 9134341 412 6 3760 4.5 1.5 3.0 1.5 3782 chr3L 9130559 intergenic bol - chr3L 9132450 intergenic not near genes chr3L 9134341 intergenic Dhpr + chr3L_6_9130001 chr3L_9130001 RAL-310 565 chr3L 9219245 9219275 chr3L 9219917 9219926 jockey 10 665 3.5 1.0 2.2 3.1 681 chr3L 9219245 intergenic not near genes chr3L 9219586 intergenic not near genes chr3L 9219926 intergenic not near genes chr3L_10_9215001 chr3L_9215001 RAL-310 566 chr3L 9270626 9270647 chr3L 9278375 9278399 roo 6 7753 2.5 2.5 2.5 1.7 7773 chr3L 9270626 intron GluRIB + chr3L 9274512 intron GluRIB + chr3L 9278399 exon GluRIB + chr3L_6_9270001 chr3L_9270001 RAL-310 567 chr3L 9344213 9344223 chr3L 9344275 9344295 4 71 0.0 3.5 1.8 1.4 82 chr3L 9344213 intron PGRP-LC + chr3L 9344254 intron PGRP-LC + chr3L 9344295 intron PGRP-LC + chr3L_4_9340001 chr3L_9340001 RAL-310 568 chr3L 9415145 9415180 chr3L 9415232 9415267 5 87 1.0 2.0 1.5 2.0 122 chr3L 9415145 intron CG3967 - chr3L 9415206 intron CG3967 - chr3L 9415267 intron CG3967 - chr3L_5_9415001 chr3L_9415001 RAL-310 569 chr3L 9548967 9549000 chr3L 9549062 9549078 5 92 2.5 3.5 3.0 1.2 111 chr3L 9548967 intron CG42673 + chr3L 9549022 intron CG42673 + chr3L 9549078 intron CG42673 + chr3L_5_9545001 chr3L_9545001 RAL-310 570 chr3L 9575906 9575947 chr3L 9580983 9581018 jockey 12 5077 3.0 3.0 3.0 3.0 5112 chr3L 9575906 intron CG42673 + chr3L 9578462 intron CG42673 + chr3L 9581018 intron CG42673 + chr3L_12_9575001 chr3L_9575001 RAL-310 571 chr3L 9595858 9595891 chr3L 9596083 9596116 6 226 3.0 3.5 3.2 1.4 258 chr3L 9595858 3` UTR CG42673 + chr3L 9595987 3` UTR CG42673 + chr3L 9596116 3` UTR CG42673 + chr3L_6_9595001 chr3L_9595001 RAL-310 572 chr3L 9637855 9637887 chr3L 9637937 9637969 8 81 2.0 0.5 1.2 3.6 114 chr3L 9637855 intron fry - chr3L 9637912 intron fry - chr3L 9637969 intron fry - chr3L_8_9635001 chr3L_9635001 RAL-310 573 chr3L 9646473 9646479 chr3L 9646596 9646604 4 124 1.5 0.0 0.8 2.2 131 chr3L 9646473 intron,intron fry -,CG33696 + chr3L 9646538 intron,intron fry -,CG33696 + chr3L 9646604 intron,intron fry -,CG33696 + chr3L_4_9645001 chr3L_9645001 RAL-310 574 chr3L 9918882 9918906 chr3L 9918977 9919001 6 93 4.0 1.0 2.5 1.7 119 chr3L 9918882 intron CG34356 + chr3L 9918942 intron CG34356 + chr3L 9919001 intron CG34356 + chr3L_6_9915001 chr3L_9915001 RAL-310 575 chr3L 9951195 9951228 chr3L 9951282 9951315 9 86 1.0 3.5 2.2 2.8 120 chr3L 9951195 intron CG34356 + chr3L 9951255 intron CG34356 + chr3L 9951315 intron CG34356 + chr3L_9_9950001 chr3L_9950001 RAL-310 576 chr3L 10014280 10014304 chr3L 10014428 10014452 4 147 0.5 0.5 0.5 2.7 172 chr3L 10014280 intron dpr6 + chr3L 10014366 intron dpr6 + chr3L 10014452 intron dpr6 + chr3L_4_10010001 chr3L_10010001 RAL-310 577 chr3L 10049554 10049572 chr3L 10049630 10049652 5 77 2.5 0.0 1.2 2.3 98 chr3L 10049554 intron dpr6 + chr3L 10049603 intron dpr6 + chr3L 10049652 intron dpr6 + chr3L_5_10045001 chr3L_10045001 RAL-310 578 chr3L 10308740 10308768 chr3L 10308817 10308844 5 76 4.5 2.0 3.2 1.2 104 chr3L 10308740 intergenic not near genes chr3L 10308792 intergenic not near genes chr3L 10308844 intergenic not near genes chr3L_5_10305001 chr3L_10305001 RAL-310 579 chr3L 10341730 10341742 chr3L 10341853 10341868 5 126 4.0 7.5 5.8 0.7 138 chr3L 10341730 intergenic not near genes chr3L 10341799 intergenic not near genes chr3L 10341868 intergenic not near genes chr3L_5_10340001 chr3L_10340001 RAL-310 580 chr3L 10417587 10417595 chr3L 10417658 10417663 5 72 6.0 3.5 4.8 0.9 76 chr3L 10417587 intergenic not near genes chr3L 10417625 intergenic not near genes chr3L 10417663 intergenic not near genes chr3L_5_10415001 chr3L_10415001 RAL-310 581 chr3L 10654970 10654998 chr3L 10655050 10655078 6 78 2.5 1.5 2.0 2.0 108 chr3L 10654970 intron CG32066 - chr3L 10655024 intron CG32066 - chr3L 10655078 intron CG32066 - chr3L_6_10655001 chr3L_10655001 RAL-310 582 chr3L 10762840 10762862 chr3L 10762918 10762946 7 80 4.5 4.5 4.5 1.3 106 chr3L 10762840 intergenic not near genes chr3L 10762893 intergenic not near genes chr3L 10762946 intergenic not near genes chr3L_7_10760001 chr3L_10760001 RAL-310 583 chr3L 10778822 10778834 chr3L 10778898 10778909 6 76 0.0 3.5 1.8 2.1 87 chr3L 10778822 intergenic not near genes chr3L 10778866 intergenic not near genes chr3L 10778909 intergenic not near genes chr3L_6_10775001 chr3L_10775001 RAL-310 584 chr3L 10864980 10865012 chr3L 10865131 10865163 8 148 2.5 3.0 2.8 2.1 183 chr3L 10864980 intron tna + chr3L 10865072 intron tna + chr3L 10865163 intron tna + chr3L_8_10865001 chr3L_10865001 RAL-310 585 chr3L 10904302 10904329 chr3L 10904395 10904422 6 93 4.0 2.0 3.0 1.5 120 chr3L 10904302 intergenic not near genes chr3L 10904362 intergenic not near genes chr3L 10904422 intergenic not near genes chr3L_6_10900001 chr3L_10900001 RAL-310 586 chr3L 11087061 11087087 chr3L 11088849 11088873 S-element 11 1788 3.0 2.5 2.8 2.9 1812 chr3L 11087061 intron JIL-1 - chr3L 11087967 intron JIL-1 - chr3L 11088873 intron JIL-1 - chr3L_11_11085001 chr3L_11085001 RAL-310 587 chr3L 11329694 11329727 chr3L 11332898 11332925 jockey 5 3197 5.5 3.5 4.5 0.9 3231 chr3L 11329694 intergenic not near genes chr3L 11331310 intergenic not near genes chr3L 11332925 intergenic not near genes chr3L_5_11330001 chr3L_11330001 RAL-310 588 chr3L 11435561 11435588 chr3L 11435729 11435757 9 167 4.0 2.0 3.0 2.2 196 chr3L 11435561 intergenic CG6149 -,CR44548 + chr3L 11435659 5` UTR CR44548 + chr3L 11435757 5` UTR CR44548 + chr3L_9_11435001 chr3L_11435001 RAL-310 589 chr3L 11564797 11564813 chr3L 11572408 11572438 412 6 7617 3.5 5.0 4.2 1.2 7641 chr3L 11564797 exon CG33267 + chr3L 11568618 intron CG33267 + chr3L 11572438 exon CG33267 + chr3L_6_11565001 chr3L_11565001 RAL-310 590 chr3L 11579565 11579585 chr3L 11579671 11579690 9 105 1.0 3.5 2.2 2.8 125 chr3L 11579565 intergenic CG43390 - chr3L 11579628 intergenic CG43390 - chr3L 11579690 intergenic CG43390 - chr3L_9_11575001 chr3L_11575001 RAL-310 591 chr3L 11744015 11744045 chr3L 11744123 11744144 8 107 3.0 0.0 1.5 3.2 129 chr3L 11744015 exon CG6024 - chr3L 11744080 intron CG6024 - chr3L 11744144 intron CG6024 - chr3L_8_11740001 chr3L_11740001 RAL-310 592 chr3L 11770994 11771017 chr3L 11771080 11771103 4 86 0.5 1.5 1.0 2.0 109 chr3L 11770994 exon Muc68D - chr3L 11771048 exon Muc68D - chr3L 11771103 exon Muc68D - chr3L_4_11770001 chr3L_11770001 RAL-310 593 chr3L 11819862 11819882 chr3L 11819940 11819960 7 77 1.0 3.5 2.2 2.2 98 chr3L 11819862 intron CG5946 - chr3L 11819911 intron CG5946 - chr3L 11819960 intron CG5946 - chr3L_7_11815001 chr3L_11815001 RAL-310 594 chr3L 11849338 11849356 chr3L 11849432 11849456 6 99 0.5 1.0 0.8 3.3 118 chr3L 11849338 intergenic not near genes chr3L 11849397 intergenic not near genes chr3L 11849456 intergenic not near genes chr3L_6_11845001 chr3L_11845001 RAL-310 595 chr3L 11850139 11850170 chr3L 11850234 11850238 4 88 2.0 0.0 1.0 2.0 99 chr3L 11850139 intergenic not near genes chr3L 11850188 intergenic CG44837 - chr3L 11850238 intergenic CG44837 - chr3L_4_11850001 chr3L_11850001 RAL-310 596 chr3L 11864552 11864578 chr3L 11865847 11865873 pogo 8 1295 3.5 3.0 3.2 1.9 1321 chr3L 11864552 intron CG44837 - chr3L 11865212 intron CG44837 - chr3L 11865873 intron CG44837 - chr3L_8_11865001 chr3L_11865001 RAL-310 597 chr3L 12013917 12013936 chr3L 12014004 12014027 7 90 3.5 4.5 4.0 1.4 110 chr3L 12013917 intron rols - chr3L 12013972 intron rols - chr3L 12014027 intron rols - chr3L_7_12010001 chr3L_12010001 RAL-310 598 chr3L 12034891 12034918 chr3L 12034968 12034995 4 77 1.5 0.5 1.0 2.0 104 chr3L 12034891 intron rols - chr3L 12034943 intron rols - chr3L 12034995 intron rols - chr3L_4_12030001 chr3L_12030001 RAL-310 599 chr3L 12052703 12052737 chr3L 12052792 12052826 7 87 0.5 2.0 1.2 3.2 123 chr3L 12052703 intron rols - chr3L 12052764 intron rols - chr3L 12052826 intron rols - chr3L_7_12050001 chr3L_12050001 RAL-310 600 chr3L 12304093 12304116 chr3L 12304169 12304190 5 75 3.0 5.5 4.2 1.0 97 chr3L 12304093 intergenic not near genes chr3L 12304142 intergenic not near genes chr3L 12304190 intergenic not near genes chr3L_5_12300001 chr3L_12300001 RAL-310 601 chr3L 12312486 12312501 chr3L 12312563 12312579 5 76 4.0 2.0 3.0 1.2 93 chr3L 12312486 intergenic not near genes chr3L 12312532 intergenic not near genes chr3L 12312579 intergenic not near genes chr3L_5_12310001 chr3L_12310001 RAL-310 602 chr3L 12369534 12369563 chr3L 12369624 12369653 4 90 0.0 1.5 0.8 2.2 119 chr3L 12369534 intron Ncc69 - chr3L 12369594 intron Ncc69 - chr3L 12369653 intron Ncc69 - chr3L_4_12365001 chr3L_12365001 RAL-310 603 chr3L 12578046 12578065 chr3L 12578134 12578153 5 88 2.5 0.0 1.2 2.3 107 chr3L 12578046 intergenic not near genes chr3L 12578100 intergenic not near genes chr3L 12578153 intergenic not near genes chr3L_5_12575001 chr3L_12575001 RAL-310 604 chr3L 12788427 12788438 chr3L 12788544 12788558 4 119 2.0 4.5 3.2 1.0 131 chr3L 12788427 intron Atg1 - chr3L 12788492 intron Atg1 - chr3L 12788558 exon Atg1 - chr3L_4_12785001 chr3L_12785001 RAL-310 605 chr3L 12801984 12801998 chr3L 12802054 12802074 4 74 3.0 1.0 2.0 1.3 90 chr3L 12801984 intron Atg1 - chr3L 12802029 intron Atg1 - chr3L 12802074 intron Atg1 - chr3L_4_12800001 chr3L_12800001 RAL-310 606 chr3L 12929734 12929744 chr3L 12930049 12930060 4 315 0.0 1.0 0.5 2.7 326 chr3L 12929734 intergenic not near genes chr3L 12929897 intergenic not near genes chr3L 12930060 intergenic not near genes chr3L_4_12925001 chr3L_12925001 RAL-310 607 chr3L 12957797 12957817 chr3L 12962278 12962299 copia 5 4481 1.0 2.5 1.8 1.8 4502 chr3L 12957797 intergenic not near genes chr3L 12960048 intergenic not near genes chr3L 12962299 intergenic not near genes chr3L_5_12960001 chr3L_12960001 RAL-310 608 chr3L 13087977 13088004 chr3L 13088055 13088077 7 75 1.0 5.5 3.2 1.7 100 chr3L 13087977 5` UTR CR45749 + chr3L 13088027 5` UTR CR45749 + chr3L 13088077 5` UTR CR45749 + chr3L_7_13085001 chr3L_13085001 RAL-310 609 chr3L 13122517 13122537 chr3L 13122593 13122613 4 76 2.5 2.0 2.2 1.2 96 chr3L 13122517 intergenic not near genes chr3L 13122565 intergenic not near genes chr3L 13122613 intergenic not near genes chr3L_4_13120001 chr3L_13120001 RAL-310 610 chr3L 13296522 13296542 chr3L 13296613 13296633 4 90 3.0 1.5 2.2 1.2 111 chr3L 13296522 intergenic Sfp70A4 -,CR45253 + chr3L 13296578 3` UTR Sfp70A4 - chr3L 13296633 3` UTR Sfp70A4 - chr3L_4_13295001 chr3L_13295001 RAL-310 611 chr3L 13338344 13338366 chr3L 13338459 13338480 4 112 0.5 0.0 0.2 3.3 136 chr3L 13338344 intergenic not near genes chr3L 13338412 intergenic not near genes chr3L 13338480 intergenic not near genes chr3L_4_13335001 chr3L_13335001 RAL-310 612 chr3L 13455761 13455783 chr3L 13455910 13455916 6 150 1.5 4.0 2.8 1.6 155 chr3L 13455761 intron CG10738 + chr3L 13455838 intron CG10738 + chr3L 13455916 intron CG10738 + chr3L_6_13455001 chr3L_13455001 RAL-310 613 chr3L 13565187 13565218 chr3L 13565269 13565286 10 77 1.0 1.0 1.0 5.0 99 chr3L 13565187 intron bru-3 - chr3L 13565236 intron bru-3 - chr3L 13565286 intron bru-3 - chr3L_10_13565001 chr3L_13565001 RAL-310 614 chr3L 13629531 13629549 chr3L 13629639 13629660 9 109 2.0 4.5 3.2 2.1 129 chr3L 13629531 intron bru-3 - chr3L 13629596 intron bru-3 - chr3L 13629660 intron bru-3 - chr3L_9_13625001 chr3L_13625001 RAL-310 615 chr3L 13774639 13774663 chr3L 13774724 13774749 7 85 2.0 1.5 1.8 2.5 110 chr3L 13774639 intron bru-3 - chr3L 13774694 intron bru-3 - chr3L 13774749 intron bru-3 - chr3L_7_13770001 chr3L_13770001 RAL-310 616 chr3L 13866769 13866792 chr3L 13868440 13868462 8 1670 22.0 8.5 15.2 0.5 1693 chr3L 13866769 5` UTR CG8745 - chr3L 13867616 3` UTR dysc - chr3L 13868462 3` UTR dysc - chr3L_8_13865001 chr3L_13865001 RAL-310 617 chr3L 14295981 14296012 chr3L 14296466 14296484 roo 7 483 3.5 4.0 3.8 1.5 503 chr3L 14295981 intron fz + chr3L 14296232 intron fz + chr3L 14296484 intron fz + chr3L_7_14295001 chr3L_14295001 RAL-310 618 chr3L 14302954 14302962 chr3L 14303025 14303048 5 78 0.5 3.0 1.8 1.8 94 chr3L 14302954 intron fz + chr3L 14303001 intron fz + chr3L 14303048 intron fz + chr3L_5_14300001 chr3L_14300001 RAL-310 619 chr3L 14486016 14486048 chr3L 14486097 14486122 5 79 2.0 0.5 1.2 2.3 106 chr3L 14486016 intron bbg - chr3L 14486069 intron bbg - chr3L 14486122 intron bbg - chr3L_5_14485001 chr3L_14485001 RAL-310 620 chr3L 14606417 14606435 chr3L 14606513 14606514 5 93 4.0 2.5 3.2 1.2 97 chr3L 14606417 intergenic not near genes chr3L 14606466 intergenic not near genes chr3L 14606514 intergenic not near genes chr3L_5_14605001 chr3L_14605001 RAL-310 621 chr3L 14652640 14652659 chr3L 14652719 14652738 8 78 4.0 1.0 2.5 2.3 98 chr3L 14652640 intron dlp + chr3L 14652689 intron dlp + chr3L 14652738 intron dlp + chr3L_8_14650001 chr3L_14650001 RAL-310 622 chr3L 14652660 14652671 chr3L 14652718 14652750 5 73 2.5 1.0 1.8 1.8 90 chr3L 14652660 intron dlp + chr3L 14652705 intron dlp + chr3L 14652750 intron dlp + chr3L_5_14650001 chr3L_14650001 RAL-310 623 chr3L 14721181 14721210 chr3L 14723024 14723051 Rt1c 11 1839 3.0 1.5 2.2 3.4 1870 chr3L 14721181 intron ome + chr3L 14722116 intron ome + chr3L 14723051 intron ome + chr3L_11_14720001 chr3L_14720001 RAL-310 624 chr3L 14729520 14729546 chr3L 14729633 14729659 4 113 2.0 1.0 1.5 1.6 139 chr3L 14729520 intron ome + chr3L 14729590 intron ome + chr3L 14729659 intron ome + chr3L_4_14725001 chr3L_14725001 RAL-310 625 chr3L 14731316 14731348 chr3L 14731734 14731765 6 417 0.5 3.0 1.8 2.1 449 chr3L 14731316 intron ome + chr3L 14731540 intron ome + chr3L 14731765 intron ome + chr3L_6_14730001 chr3L_14730001 RAL-310 626 chr3L 14731793 14731814 chr3L 14732295 14732311 4 499 4.0 3.5 3.8 0.8 518 chr3L 14731793 intron ome + chr3L 14732052 intron ome + chr3L 14732311 intron ome + chr3L_4_14730001 chr3L_14730001 RAL-310 627 chr3L 14840386 14840388 chr3L 14840478 14840493 4 101 1.0 4.5 2.8 1.1 107 chr3L 14840386 intron CG17839 + chr3L 14840440 intron CG17839 + chr3L 14840493 intron CG17839 + chr3L_4_14840001 chr3L_14840001 RAL-310 628 chr3L 14870048 14870072 chr3L 14870124 14870148 6 75 2.0 4.5 3.2 1.4 100 chr3L 14870048 intron CG17839 + chr3L 14870098 intron CG17839 + chr3L 14870148 intron CG17839 + chr3L_6_14870001 chr3L_14870001 RAL-310 629 chr3L 14893658 14893685 chr3L 14893743 14893770 6 82 1.0 3.5 2.2 1.9 112 chr3L 14893658 intergenic CG34245 - chr3L 14893714 intergenic CG34245 - chr3L 14893770 3` UTR CG34245 - chr3L_6_14890001 chr3L_14890001 RAL-310 630 chr3L 14917661 14917689 chr3L 14917744 14917771 5 77 5.5 4.5 5.0 0.8 110 chr3L 14917661 intron DCX-EMAP + chr3L 14917716 intron DCX-EMAP + chr3L 14917771 intron DCX-EMAP + chr3L_5_14915001 chr3L_14915001 RAL-310 631 chr3L 14922101 14922133 chr3L 14922209 14922236 6 106 2.0 0.0 1.0 3.0 135 chr3L 14922101 intron DCX-EMAP + chr3L 14922168 intron DCX-EMAP + chr3L 14922236 intron DCX-EMAP + chr3L_6_14920001 chr3L_14920001 RAL-310 632 chr3L 15085052 15085076 chr3L 15086215 15086233 1360 4 1162 2.0 0.0 1.0 2.0 1181 chr3L 15085052 intron cp309 - chr3L 15085642 intron cp309 - chr3L 15086233 intron cp309 - chr3L_4_15085001 chr3L_15085001 RAL-310 633 chr3L 15166976 15167000 chr3L 15167057 15167086 9 85 1.0 2.0 1.5 3.6 110 chr3L 15166976 intergenic not near genes chr3L 15167031 intergenic not near genes chr3L 15167086 intergenic not near genes chr3L_9_15165001 chr3L_15165001 RAL-310 634 chr3L 15393663 15393686 chr3L 15393863 15393888 4 200 0.5 1.5 1.0 2.0 225 chr3L 15393663 intergenic not near genes chr3L 15393776 intergenic not near genes chr3L 15393888 intergenic not near genes chr3L_4_15390001 chr3L_15390001 RAL-310 635 chr3L 15442045 15442051 chr3L 15442121 15442122 4 75 5.0 2.0 3.5 0.9 77 chr3L 15442045 intergenic not near genes chr3L 15442084 intergenic not near genes chr3L 15442122 intergenic not near genes chr3L_4_15440001 chr3L_15440001 RAL-310 636 chr3L 15442052 15442063 chr3L 15442117 15442138 6 73 2.0 1.5 1.8 2.1 86 chr3L 15442052 intergenic not near genes chr3L 15442095 intergenic not near genes chr3L 15442138 intergenic not near genes chr3L_6_15440001 chr3L_15440001 RAL-310 637 chr3L 15466040 15466125 chr3L 15466121 15466221 4 88 0.0 0.0 0.0 4.0 181 chr3L 15466040 intergenic not near genes chr3L 15466130 intergenic not near genes chr3L 15466221 intergenic not near genes chr3L_4_15465001 chr3L_15465001 RAL-310 638 chr3L 15709853 15709874 chr3L 15709939 15709943 7 82 1.5 6.5 4.0 1.4 90 chr3L 15709853 intergenic not near genes chr3L 15709898 intergenic not near genes chr3L 15709943 intergenic not near genes chr3L_7_15705001 chr3L_15705001 RAL-310 639 chr3L 15709875 15709876 chr3L 15709932 15709962 5 77 1.0 5.5 3.2 1.2 87 chr3L 15709875 intergenic not near genes chr3L 15709918 intergenic not near genes chr3L 15709962 intergenic not near genes chr3L_5_15705001 chr3L_15705001 RAL-310 640 chr3L 15784569 15784594 chr3L 15784666 15784691 6 96 0.5 0.5 0.5 4.0 122 chr3L 15784569 intergenic not near genes chr3L 15784630 intergenic not near genes chr3L 15784691 intergenic not near genes chr3L_6_15780001 chr3L_15780001 RAL-310 641 chr3L 15840433 15840467 chr3L 15840521 15840552 4 87 0.0 0.0 0.0 4.0 119 chr3L 15840433 intron CG32150 - chr3L 15840492 intron CG32150 - chr3L 15840552 intron CG32150 - chr3L_4_15840001 chr3L_15840001 RAL-310 642 chr3L 16102268 16102295 chr3L 16102353 16102376 10 82 3.0 6.5 4.8 1.7 108 chr3L 16102268 exon CG5414 + chr3L 16102322 intron CG5414 + chr3L 16102376 intron CG5414 + chr3L_10_16100001 chr3L_16100001 RAL-310 643 chr3L 16162601 16162630 chr3L 16162679 16162712 7 80 2.0 1.5 1.8 2.5 111 chr3L 16162601 intron CG5151 - chr3L 16162656 intron CG5151 - chr3L 16162712 intron CG5151 - chr3L_7_16160001 chr3L_16160001 RAL-310 644 chr3L 16184103 16184115 chr3L 16188943 16188959 X-element 4 4842 1.0 3.0 2.0 1.3 4856 chr3L 16184103 intergenic not near genes chr3L 16186531 intergenic not near genes chr3L 16188959 intergenic not near genes chr3L_4_16185001 chr3L_16185001 RAL-310 645 chr3L 16340268 16340285 chr3L 16340392 16340408 6 120 2.0 3.5 2.8 1.6 140 chr3L 16340268 intron CG4998 + chr3L 16340338 intron CG4998 + chr3L 16340408 intron CG4998 + chr3L_6_16340001 chr3L_16340001 RAL-310 646 chr3L 16493976 16493996 chr3L 16494492 16494510 jockey 9 517 3.5 4.0 3.8 1.9 534 chr3L 16493976 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494243 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494510 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_9_16490001 chr3L_16490001 RAL-310 647 chr3L 16506670 16506695 chr3L 16506858 16506888 7 192 3.0 3.0 3.0 1.8 218 chr3L 16506670 intron CG43373 - chr3L 16506779 intron CG43373 - chr3L 16506888 intron CG43373 - chr3L_7_16505001 chr3L_16505001 RAL-310 648 chr3L 16540056 16540088 chr3L 16540144 16540164 6 84 0.5 2.5 1.5 2.4 108 chr3L 16540056 intron CG43373 - chr3L 16540110 intron CG43373 - chr3L 16540164 intron CG43373 - chr3L_6_16540001 chr3L_16540001 RAL-310 649 chr3L 16563232 16563257 chr3L 16563313 16563338 5 80 0.5 0.0 0.2 4.2 106 chr3L 16563232 intergenic Mipp1 - chr3L 16563285 intergenic Mipp1 - chr3L 16563338 intergenic Mipp1 - chr3L_5_16560001 chr3L_16560001 RAL-310 650 chr3L 16659112 16659119 chr3L 16659189 16659197 4 78 5.5 5.0 5.2 0.6 85 chr3L 16659112 intron Baldspot - chr3L 16659154 intron Baldspot - chr3L 16659197 intron Baldspot - chr3L_4_16655001 chr3L_16655001 RAL-310 651 chr3L 16659128 16659134 chr3L 16659187 16659212 4 71 3.0 5.0 4.0 0.8 84 chr3L 16659128 intron Baldspot - chr3L 16659170 intron Baldspot - chr3L 16659212 intron Baldspot - chr3L_4_16655001 chr3L_16655001 RAL-310 652 chr3L 16670145 16670181 chr3L 16670245 16670281 5 100 1.5 3.0 2.2 1.6 136 chr3L 16670145 intergenic CR45241 - chr3L 16670213 intergenic CR45241 - chr3L 16670281 intergenic CR45241 - chr3L_5_16670001 chr3L_16670001 RAL-310 653 chr3L 16888814 16888844 chr3L 16889103 16889134 9 290 3.0 3.5 3.2 2.1 320 chr3L 16888814 intron Lmpt + chr3L 16888974 intron Lmpt + chr3L 16889134 intron Lmpt + chr3L_9_16885001 chr3L_16885001 RAL-310 654 chr3L 17026791 17026823 chr3L 17026872 17026883 5 73 1.5 2.0 1.8 1.8 92 chr3L 17026791 exon Fit2 + chr3L 17026837 3` UTR Fit2 + chr3L 17026883 3` UTR Fit2 + chr3L_5_17025001 chr3L_17025001 RAL-310 655 chr3L 17120653 17120681 chr3L 17120729 17120757 5 76 2.0 0.0 1.0 2.5 104 chr3L 17120653 intron Rbp6 - chr3L 17120705 intron Rbp6 - chr3L 17120757 intron Rbp6 - chr3L_5_17120001 chr3L_17120001 RAL-310 656 chr3L 17367434 17367459 chr3L 17367528 17367553 6 94 1.5 0.0 0.8 3.3 119 chr3L 17367434 intergenic CR45688 +,Cad74A - chr3L 17367494 intergenic CR45688 +,Cad74A - chr3L 17367553 intergenic CR45688 +,Cad74A - chr3L_6_17365001 chr3L_17365001 RAL-310 657 chr3L 17495232 17495246 chr3L 17495346 17495361 4 112 5.5 0.5 3.0 1.0 129 chr3L 17495232 intron,exon Oatp74D +,edin + chr3L 17495296 intron,3` UTR Oatp74D +,edin + chr3L 17495361 intron Oatp74D + chr3L_4_17495001 chr3L_17495001 RAL-310 658 chr3L 17510744 17510764 chr3L 17510828 17510848 5 83 1.5 3.5 2.5 1.4 104 chr3L 17510744 exon Oatp74D + chr3L 17510796 intron Oatp74D + chr3L 17510848 intron Oatp74D + chr3L_5_17510001 chr3L_17510001 RAL-310 659 chr3L 17516981 17517011 chr3L 17524539 17524568 412 6 7554 3.5 3.0 3.2 1.4 7587 chr3L 17516981 intron CG7564 + chr3L 17520774 intron CG7564 + chr3L 17524568 3` UTR CG7564 + chr3L_6_17520001 chr3L_17520001 RAL-310 660 chr3L 17535811 17535845 chr3L 17535925 17535958 8 105 2.5 2.5 2.5 2.3 147 chr3L 17535811 intron Nedd4 + chr3L 17535884 intron Nedd4 + chr3L 17535958 intron Nedd4 + chr3L_8_17535001 chr3L_17535001 RAL-310 661 chr3L 17991581 17991604 chr3L 17991659 17991679 4 77 0.0 1.5 0.8 2.2 98 chr3L 17991581 intron Eip75B - chr3L 17991630 intron Eip75B - chr3L 17991679 intron Eip75B - chr3L_4_17990001 chr3L_17990001 RAL-310 662 chr3L 18223165 18223181 chr3L 18223248 18223263 4 83 2.0 0.0 1.0 2.0 98 chr3L 18223165 intergenic not near genes chr3L 18223214 intergenic not near genes chr3L 18223263 intergenic not near genes chr3L_4_18220001 chr3L_18220001 RAL-310 663 chr3L 18408735 18408760 chr3L 18408817 18408846 4 85 2.0 0.5 1.2 1.8 111 chr3L 18408735 intergenic not near genes chr3L 18408790 intergenic not near genes chr3L 18408846 intergenic not near genes chr3L_4_18405001 chr3L_18405001 RAL-310 664 chr3L 18571080 18571106 chr3L 18571301 18571314 4 218 1.5 1.5 1.5 1.6 234 chr3L 18571080 intron AstC-R1 + chr3L 18571197 intron AstC-R1 + chr3L 18571314 intron AstC-R1 + chr3L_4_18570001 chr3L_18570001 RAL-310 665 chr3L 18638577 18638605 chr3L 18638670 18638682 4 90 0.0 1.0 0.5 2.7 105 chr3L 18638577 intron MYPT-75D + chr3L 18638630 intron MYPT-75D + chr3L 18638682 intron MYPT-75D + chr3L_4_18635001 chr3L_18635001 RAL-310 666 chr3L 18656186 18656219 chr3L 18656270 18656304 7 84 2.0 3.0 2.5 2.0 118 chr3L 18656186 intron MYPT-75D + chr3L 18656245 intron MYPT-75D + chr3L 18656304 intron MYPT-75D + chr3L_7_18655001 chr3L_18655001 RAL-310 667 chr3L 18701130 18701163 chr3L 18701218 18701251 6 88 2.5 3.0 2.8 1.6 121 chr3L 18701130 intergenic not near genes chr3L 18701190 intergenic not near genes chr3L 18701251 intergenic not near genes chr3L_6_18700001 chr3L_18700001 RAL-310 668 chr3L 18772411 18772434 chr3L 18781092 18781115 roo 7 8680 1.5 2.0 1.8 2.5 8704 chr3L 18772411 intron ftz-f1 - chr3L 18776763 intron ftz-f1 - chr3L 18781115 intron ftz-f1 - chr3L_7_18775001 chr3L_18775001 RAL-310 669 chr3L 18810143 18810173 chr3L 18810220 18810250 5 77 1.5 1.0 1.2 2.3 107 chr3L 18810143 intron CG14073 - chr3L 18810196 intron CG14073 - chr3L 18810250 intron CG14073 - chr3L_5_18810001 chr3L_18810001 RAL-310 670 chr3L 18832614 18832641 chr3L 18832692 18832719 6 78 0.0 4.0 2.0 2.0 105 chr3L 18832614 intron Indy - chr3L 18832666 intron Indy - chr3L 18832719 intron Indy - chr3L_6_18830001 chr3L_18830001 RAL-310 671 chr3L 18833779 18833813 chr3L 18834943 18834975 1360 6 1159 1.0 2.0 1.5 2.4 1196 chr3L 18833779 intron Indy - chr3L 18834377 intron Indy - chr3L 18834975 intron Indy - chr3L_6_18830001 chr3L_18830001 RAL-310 672 chr3L 18839741 18839760 chr3L 18839823 18839842 4 82 1.5 2.5 2.0 1.3 101 chr3L 18839741 intron Indy - chr3L 18839792 intron Indy - chr3L 18839842 intron Indy - chr3L_4_18835001 chr3L_18835001 RAL-310 673 chr3L 18941178 18941206 chr3L 18941289 18941317 5 111 3.0 1.0 2.0 1.7 139 chr3L 18941178 intron CG32204 - chr3L 18941248 intron CG32204 - chr3L 18941317 intron CG32204 - chr3L_5_18940001 chr3L_18940001 RAL-310 674 chr3L 19117041 19117070 chr3L 19124488 19124517 mdg1 7 7445 3.5 5.5 4.5 1.3 7476 chr3L 19117041 intron CG14082 - chr3L 19120779 intron CG14082 - chr3L 19124517 intron CG14082 - chr3L_7_19120001 chr3L_19120001 RAL-310 675 chr3L 19187313 19187346 chr3L 19187447 19187479 7 133 3.5 4.0 3.8 1.5 166 chr3L 19187313 intron fz2 - chr3L 19187396 intron fz2 - chr3L 19187479 intron fz2 - chr3L_7_19185001 chr3L_19185001 RAL-310 676 chr3L 19208057 19208084 chr3L 19209431 19209458 Doc 5 1374 4.0 3.5 3.8 1.0 1401 chr3L 19208057 intron fz2 - chr3L 19208758 intron fz2 - chr3L 19209458 intron fz2 - chr3L_5_19205001 chr3L_19205001 RAL-310 677 chr3L 19527929 19527937 chr3L 19528005 19528015 4 78 4.0 1.5 2.8 1.1 86 chr3L 19527929 intergenic not near genes chr3L 19527972 intergenic not near genes chr3L 19528015 intergenic not near genes chr3L_4_19525001 chr3L_19525001 RAL-310 678 chr3L 19848502 19848534 chr3L 19857691 19857696 roo 4 9183 1.5 1.0 1.2 1.8 9194 chr3L 19848502 intron Papss + chr3L 19853099 intron Papss + chr3L 19857696 intron Papss + chr3L_4_19850001 chr3L_19850001 RAL-310 679 chr3L 19861820 19861853 chr3L 19863608 19863624 S-element 10 1782 2.0 2.0 2.0 3.3 1804 chr3L 19861820 5` UTR CR45433 + chr3L 19862722 intergenic not near genes chr3L 19863624 intergenic not near genes chr3L_10_19860001 chr3L_19860001 RAL-310 680 chr3L 19905180 19905206 chr3L 19905509 19905533 4 328 0.5 2.5 1.5 1.6 353 chr3L 19905180 intron,intron Mi-2 -,Su(Tpl) - chr3L 19905356 intron,intron Mi-2 -,Su(Tpl) - chr3L 19905533 intron,intron Mi-2 -,Su(Tpl) - chr3L_4_19905001 chr3L_19905001 RAL-310 681 chr3L 19933536 19933557 chr3L 19934358 19934379 5 822 2.0 1.0 1.5 2.0 843 chr3L 19933536 intergenic CR45678 + chr3L 19933958 5` UTR CR45678 + chr3L 19934379 intergenic CR45678 + chr3L_5_19930001 chr3L_19930001 RAL-310 682 chr3L 20143092 20143118 chr3L 20143172 20143188 5 78 2.0 3.5 2.8 1.3 96 chr3L 20143092 intergenic not near genes chr3L 20143140 intergenic not near genes chr3L 20143188 intergenic not near genes chr3L_5_20140001 chr3L_20140001 RAL-310 683 chr3L 20148288 20148315 chr3L 20148377 20148405 6 87 1.0 3.0 2.0 2.0 117 chr3L 20148288 intergenic not near genes chr3L 20148346 intergenic not near genes chr3L 20148405 intergenic not near genes chr3L_6_20145001 chr3L_20145001 RAL-310 684 chr3L 20257336 20257361 chr3L 20258452 20258478 pogo 6 1118 1.5 0.5 1.0 3.0 1142 chr3L 20257336 intron rdgC + chr3L 20257907 intron rdgC + chr3L 20258478 intron rdgC + chr3L_6_20255001 chr3L_20255001 RAL-310 685 chr3L 20262798 20262829 chr3L 20262907 20262941 11 106 2.5 2.0 2.2 3.4 143 chr3L 20262798 exon rdgC + chr3L 20262870 intron rdgC + chr3L 20262941 intron rdgC + chr3L_11_20260001 chr3L_20260001 RAL-310 686 chr3L 20476752 20476768 chr3L 20484351 20484357 springer 4 7596 2.5 1.0 1.8 1.4 7605 chr3L 20476752 3` UTR isoQC + chr3L 20480554 intergenic not near genes chr3L 20484357 3` UTR ZnT77C - chr3L_4_20480001 chr3L_20480001 RAL-310 687 chr3L 20590083 20590097 chr3L 20590601 20590611 412 4 520 0.5 2.5 1.5 1.6 528 chr3L 20590083 intergenic not near genes chr3L 20590347 intergenic not near genes chr3L 20590611 intergenic not near genes chr3L_4_20590001 chr3L_20590001 RAL-310 688 chr3L 20939309 20939337 chr3L 20939390 20939417 5 79 1.0 2.0 1.5 2.0 108 chr3L 20939309 intron fng - chr3L 20939363 intron fng - chr3L 20939417 intron fng - chr3L_5_20935001 chr3L_20935001 RAL-310 689 chr3L 21010383 21010398 chr3L 21010478 21010491 6 102 1.0 0.5 0.8 3.3 108 chr3L 21010383 intron skd - chr3L 21010437 intron skd - chr3L 21010491 intron skd - chr3L_6_21010001 chr3L_21010001 RAL-310 690 chr3L 21014914 21014924 chr3L 21023395 21023404 Tirant 5 8479 5.0 1.5 3.2 1.2 8490 chr3L 21014914 intron skd - chr3L 21019159 intron skd - chr3L 21023404 intron skd - chr3L_5_21015001 chr3L_21015001 RAL-310 691 chr3L 21014925 21014937 chr3L 21023394 21023415 Tirant 6 8471 3.5 1.5 2.5 1.7 8490 chr3L 21014925 intron skd - chr3L 21019170 intron skd - chr3L 21023415 intron skd - chr3L_6_21015001 chr3L_21015001 RAL-310 692 chr3L 21082219 21082226 chr3L 21082297 21082302 5 77 1.0 4.5 2.8 1.3 83 chr3L 21082219 intron ko - chr3L 21082260 intron ko - chr3L 21082302 intron ko - chr3L_5_21080001 chr3L_21080001 RAL-310 693 chr3L 21151874 21151894 chr3L 21156958 21156978 flea 5 5084 2.5 1.0 1.8 1.8 5104 chr3L 21151874 intron Ac78C - chr3L 21154426 intron Ac78C - chr3L 21156978 intron Ac78C - chr3L_5_21150001 chr3L_21150001 RAL-310 694 chr3L 21395141 21395177 chr3L 21395229 21395265 6 86 3.0 1.0 2.0 2.0 124 chr3L 21395141 intron rgn + chr3L 21395203 intron rgn + chr3L 21395265 intron rgn + chr3L_6_21395001 chr3L_21395001 RAL-310 695 chr3L 21406994 21407023 chr3L 21407072 21407102 5 78 4.0 0.0 2.0 1.7 108 chr3L 21406994 intron rgn + chr3L 21407048 intron rgn + chr3L 21407102 intron rgn + chr3L_5_21405001 chr3L_21405001 RAL-310 696 chr3L 21498838 21498869 chr3L 21500468 21500470 1360 6 1624 4.0 3.5 3.8 1.2 1632 chr3L 21498838 intron Glg1 - chr3L 21499654 intron Glg1 - chr3L 21500470 intron Glg1 - chr3L_6_21495001 chr3L_21495001 RAL-310 697 chr3L 21649775 21649801 chr3L 21649999 21650025 4 224 1.5 2.0 1.8 1.4 250 chr3L 21649775 intron CG43980 + chr3L 21649900 intron CG43980 + chr3L 21650025 intron CG43980 + chr3L_4_21645001 chr3L_21645001 RAL-310 698 chr3L 21776674 21776700 chr3L 21776761 21776786 6 87 0.0 0.0 0.0 6.0 112 chr3L 21776674 intron,intron CG42689 +,CG42552 + chr3L 21776730 intron,intron CG42689 +,CG42552 + chr3L 21776786 intron,intron CG42689 +,CG42552 + chr3L_6_21775001 chr3L_21775001 RAL-310 699 chr3L 22114792 22114816 chr3L 22114870 22114894 6 78 0.5 0.0 0.2 5.0 102 chr3L 22114792 intergenic not near genes chr3L 22114843 intergenic not near genes chr3L 22114894 intergenic not near genes chr3L_6_22110001 chr3L_22110001 RAL-310 700 chr3L 22223446 22223470 chr3L 22223607 22223631 6 160 2.0 7.0 4.5 1.1 185 chr3L 22223446 intron olf413 + chr3L 22223538 intron olf413 + chr3L 22223631 intron olf413 + chr3L_6_22220001 chr3L_22220001 RAL-310 701 chr3L 22379956 22379968 chr3L 22380033 22380066 6 89 1.0 4.5 2.8 1.6 110 chr3L 22379956 intron Ten-m - chr3L 22380011 intron Ten-m - chr3L 22380066 intron Ten-m - chr3L_6_22380001 chr3L_22380001 RAL-310 702 chr3L 22570424 22570457 chr3L 22570568 22570588 6 139 0.5 2.0 1.2 2.7 164 chr3L 22570424 intergenic not near genes chr3L 22570506 intergenic not near genes chr3L 22570588 intergenic not near genes chr3L_6_22570001 chr3L_22570001 RAL-310 703 chr3L 22577625 22577649 chr3L 22582406 22582437 Doc 11 4784 4.0 4.0 4.0 2.2 4812 chr3L 22577625 intergenic not near genes chr3L 22580031 intergenic not near genes chr3L 22582437 3` UTR CG14459 - chr3L_11_22580001 chr3L_22580001 RAL-310 704 chr3L 22617195 22617221 chr3L 22624646 22624673 blood 7 7451 4.0 1.0 2.5 2.0 7478 chr3L 22617195 intron CG14459 - chr3L 22620934 intron CG14459 - chr3L 22624673 intron CG14459 - chr3L_7_22620001 chr3L_22620001 RAL-310 705 chr3L 22865980 22866017 chr3L 22867113 22867150 Doc 6 1132 3.5 3.5 3.5 1.3 1170 chr3L 22865980 intron CG33170 + chr3L 22866565 intron CG33170 + chr3L 22867150 intron CG33170 + chr3L_6_22865001 chr3L_22865001 RAL-310 706 chr3L 22920937 22920961 chr3L 22921022 22921049 7 85 2.0 2.5 2.2 2.2 112 chr3L 22920937 intron CG12768 + chr3L 22920993 intron CG12768 + chr3L 22921049 intron CG12768 + chr3L_7_22920001 chr3L_22920001 RAL-310 707 chr3L 23182823 23182850 chr3L 23182899 23182926 6 75 1.0 2.5 1.8 2.1 103 chr3L 23182823 intron CG34031 + chr3L 23182874 intron CG34031 + chr3L 23182926 intron CG34031 + chr3L_6_23180001 chr3L_23180001 RAL-310 708 chr3L 23875527 23875544 chr3L 23875608 23875608 6 76 9.0 4.0 6.5 0.8 81 chr3L 23875527 intron CG40470 - chr3L 23875568 intron CG40470 - chr3L 23875608 intron CG40470 - chr3L_6_23875001 chr3L_23875001 RAL-310 709 chr3L 25464027 25464095 chr3L 25464109 25464192 7 86 2.5 2.0 2.2 2.2 165 chr3L 25464027 intergenic not near genes chr3L 25464110 intergenic not near genes chr3L 25464192 intergenic not near genes chr3L_7_25460001 chr3L_25460001 RAL-310 710 chr3L 27167948 27167979 chr3L 27168065 27168099 7 115 3.5 3.0 3.2 1.7 151 chr3L 27167948 intergenic not near genes chr3L 27168024 intergenic not near genes chr3L 27168099 intergenic not near genes chr3L_7_27165001 chr3L_27165001 RAL-310 711 chr3L 27390694 27390710 chr3L 27390768 27390789 5 77 28.5 26.5 27.5 0.2 95 chr3L 27390694 intron Dbp80 + chr3L 27390742 intron Dbp80 + chr3L 27390789 intron Dbp80 + chr3L_5_27390001 chr3L_27390001 RAL-310 712 chr3R 3267250 3267276 chr3R 3267433 3267457 4 182 9.5 14.0 11.8 0.3 207 chr3R 3267250 intergenic not near genes chr3R 3267354 intergenic not near genes chr3R 3267457 intergenic not near genes chr3R_4_3265001 chr3R_3265001 RAL-310 713 chr3R 4063811 4063830 chr3R 4069090 4069106 4 5279 4.5 10.5 7.5 0.5 5295 chr3R 4063811 intergenic not near genes chr3R 4066458 intergenic not near genes chr3R 4069106 intergenic not near genes chr3R_4_4065001 chr3R_4065001 RAL-310 714 chr3R 4161540 4161570 chr3R 4161617 4161647 6 76 1.0 5.0 3.0 1.5 107 chr3R 4161540 3` UTR CG40198 - chr3R 4161594 exon CG40198 - chr3R 4161647 exon CG40198 - chr3R_6_4160001 chr3R_4160001 RAL-310 715 chr3R 4408411 4408447 chr3R 4412715 4412716 Juan 8 4299 1.0 2.0 1.5 3.2 4305 chr3R 4408411 intron CG32944 - chr3R 4410564 intron CG32944 - chr3R 4412716 intron CG32944 - chr3R_8_4410001 chr3R_4410001 RAL-310 716 chr3R 4609554 4609579 chr3R 4610718 4610743 1360 8 1163 4.5 2.5 3.5 1.8 1189 chr3R 4609554 intergenic not near genes chr3R 4610148 intergenic not near genes chr3R 4610743 intergenic not near genes chr3R_8_4610001 chr3R_4610001 RAL-310 717 chr3R 4753254 4753267 chr3R 4757554 4757570 F-element 6 4300 3.5 9.0 6.2 0.8 4316 chr3R 4753254 intron,intron atms +,CG44098 - chr3R 4755412 intron,intron atms +,CG44098 - chr3R 4757570 intron,exon atms +,CG44098 - chr3R_6_4755001 chr3R_4755001 RAL-310 718 chr3R 4759725 4759751 chr3R 4761222 4761241 hopper2 9 1492 2.0 5.0 3.5 2.0 1516 chr3R 4759725 intron,intron atms +,CG44098 - chr3R 4760483 intron,intron atms +,CG44098 - chr3R 4761241 intron,intron atms +,CG44098 - chr3R_9_4760001 chr3R_4760001 RAL-310 719 chr3R 4769159 4769191 chr3R 4769236 4769269 11 77 2.5 2.0 2.2 3.4 110 chr3R 4769159 intron,intron atms +,CG44098 - chr3R 4769214 intron,intron atms +,CG44098 - chr3R 4769269 intron,intron atms +,CG44098 - chr3R_11_4765001 chr3R_4765001 RAL-310 720 chr3R 4861570 4861592 chr3R 4861646 4861673 6 73 5.0 3.0 4.0 1.2 103 chr3R 4861570 intron opa + chr3R 4861622 intron opa + chr3R 4861673 intron opa + chr3R_6_4860001 chr3R_4860001 RAL-310 721 chr3R 4896294 4896321 chr3R 4896385 4896414 4 92 0.5 0.5 0.5 2.7 120 chr3R 4896294 intergenic CR45580 + chr3R 4896354 intergenic CR45580 + chr3R 4896414 intergenic CR45580 + chr3R_4_4895001 chr3R_4895001 RAL-310 722 chr3R 5045843 5045873 chr3R 5052945 5052975 HMS-Beagle 5 7102 3.5 1.0 2.2 1.6 7132 chr3R 5045843 intron CR43635 - chr3R 5049409 intergenic not near genes chr3R 5052975 intergenic CR45588 - chr3R_5_5045001 chr3R_5045001 RAL-310 723 chr3R 5067979 5068009 chr3R 5073496 5073526 mdg3 6 5515 3.0 2.5 2.8 1.6 5547 chr3R 5067979 intergenic not near genes chr3R 5070752 intergenic not near genes chr3R 5073526 intergenic not near genes chr3R_6_5070001 chr3R_5070001 RAL-310 724 chr3R 5278089 5278121 chr3R 5278170 5278195 13 79 3.5 1.5 2.5 3.7 106 chr3R 5278089 intron mtd - chr3R 5278142 intron mtd - chr3R 5278195 intron mtd - chr3R_13_5275001 chr3R_5275001 RAL-310 725 chr3R 5445971 5445987 chr3R 5452429 5452447 Burdock 4 6459 1.0 2.0 1.5 1.6 6476 chr3R 5445971 intron CG14669 + chr3R 5449209 intron CG14669 + chr3R 5452447 intron CG14669 + chr3R_4_5445001 chr3R_5445001 RAL-310 726 chr3R 5746017 5746044 chr3R 5746258 5746285 pogo 5 241 1.5 2.5 2.0 1.7 268 chr3R 5746017 3` UTR Madm + chr3R 5746151 3` UTR Madm + chr3R 5746285 3` UTR Madm + chr3R_5_5745001 chr3R_5745001 RAL-310 727 chr3R 5765630 5765656 chr3R 5765714 5765740 6 83 2.0 3.5 2.8 1.6 110 chr3R 5765630 intron CG2082 - chr3R 5765685 intron CG2082 - chr3R 5765740 intron CG2082 - chr3R_6_5765001 chr3R_5765001 RAL-310 728 chr3R 5769234 5769262 chr3R 5769332 5769360 5 98 2.0 2.5 2.2 1.6 126 chr3R 5769234 intron CG2082 - chr3R 5769297 intron CG2082 - chr3R 5769360 intron CG2082 - chr3R_5_5765001 chr3R_5765001 RAL-310 729 chr3R 5772377 5772409 chr3R 5772535 5772567 4 154 1.0 1.0 1.0 2.0 190 chr3R 5772377 intron CG2082 - chr3R 5772472 intron CG2082 - chr3R 5772567 intron CG2082 - chr3R_4_5770001 chr3R_5770001 RAL-310 730 chr3R 5809116 5809140 chr3R 5809357 5809381 pogo 7 241 2.0 1.5 1.8 2.5 265 chr3R 5809116 3` UTR CG11000 + chr3R 5809248 3` UTR CG11000 + chr3R 5809381 3` UTR CG11000 + chr3R_7_5805001 chr3R_5805001 RAL-310 731 chr3R 5896966 5896999 chr3R 5897324 5897358 8 358 1.5 2.0 1.8 2.9 392 chr3R 5896966 intron CG34113 - chr3R 5897162 intron CG34113 - chr3R 5897358 intron CG34113 - chr3R_8_5895001 chr3R_5895001 RAL-310 732 chr3R 5927575 5927582 chr3R 5927801 5927820 pogo 4 234 5.5 1.5 3.5 0.9 245 chr3R 5927575 intron CG34113 - chr3R 5927698 intron CG34113 - chr3R 5927820 intron CG34113 - chr3R_4_5925001 chr3R_5925001 RAL-310 733 chr3R 5942474 5942497 chr3R 5942572 5942583 4 95 2.0 3.5 2.8 1.1 109 chr3R 5942474 intron CG34113 - chr3R 5942528 intron CG34113 - chr3R 5942583 intron CG34113 - chr3R_4_5940001 chr3R_5940001 RAL-310 734 chr3R 6015966 6015992 chr3R 6024443 6024472 Tirant 7 8480 1.0 2.5 1.8 2.5 8506 chr3R 6015966 intergenic not near genes chr3R 6020219 intergenic not near genes chr3R 6024472 intergenic not near genes chr3R_7_6020001 chr3R_6020001 RAL-310 735 chr3R 6316781 6316790 chr3R 6316871 6316882 5 92 3.0 3.0 3.0 1.2 101 chr3R 6316781 intron Osi17 + chr3R 6316832 intron Osi17 + chr3R 6316882 intron Osi17 + chr3R_5_6315001 chr3R_6315001 RAL-310 736 chr3R 6423415 6423439 chr3R 6423818 6423825 4 396 4.0 1.0 2.5 1.1 410 chr3R 6423415 intron gpp + chr3R 6423620 intron gpp + chr3R 6423825 intron gpp + chr3R_4_6420001 chr3R_6420001 RAL-310 737 chr3R 6550329 6550347 chr3R 6550409 6550427 4 78 2.5 3.0 2.8 1.1 98 chr3R 6550329 intron dpr11 - chr3R 6550378 intron dpr11 - chr3R 6550427 intron dpr11 - chr3R_4_6550001 chr3R_6550001 RAL-310 738 chr3R 6643473 6643506 chr3R 6643658 6643692 10 187 13.5 21.0 17.2 0.5 219 chr3R 6643473 intron CG1315 - chr3R 6643582 intron CG1315 - chr3R 6643692 intron CG1315 - chr3R_10_6640001 chr3R_6640001 RAL-310 739 chr3R 6737497 6737527 chr3R 6739284 6739314 Doc 6 1784 6.0 0.5 3.2 1.4 1817 chr3R 6737497 intron pb - chr3R 6738406 intron pb - chr3R 6739314 intron pb - chr3R_6_6735001 chr3R_6735001 RAL-310 740 chr3R 7012205 7012235 chr3R 7012282 7012312 9 75 1.5 2.5 2.0 3.0 107 chr3R 7012205 intergenic not near genes chr3R 7012258 intergenic not near genes chr3R 7012312 intergenic not near genes chr3R_9_7010001 chr3R_7010001 RAL-310 741 chr3R 7095973 7095987 chr3R 7096051 7096072 4 82 5.5 3.0 4.2 0.8 99 chr3R 7095973 intergenic not near genes chr3R 7096022 intergenic not near genes chr3R 7096072 intergenic not near genes chr3R_4_7095001 chr3R_7095001 RAL-310 742 chr3R 7103927 7103952 chr3R 7104026 7104051 7 98 2.5 1.0 1.8 2.5 124 chr3R 7103927 intron Alh - chr3R 7103989 intron Alh - chr3R 7104051 intron Alh - chr3R_7_7100001 chr3R_7100001 RAL-310 743 chr3R 7464698 7464723 chr3R 7464777 7464809 8 84 1.0 2.5 1.8 2.9 111 chr3R 7464698 intergenic not near genes chr3R 7464754 intergenic not near genes chr3R 7464809 intergenic not near genes chr3R_8_7460001 chr3R_7460001 RAL-310 744 chr3R 7621529 7621555 chr3R 7621620 7621645 4 90 0.0 4.0 2.0 1.3 116 chr3R 7621529 intron CG34127 - chr3R 7621587 intron CG34127 - chr3R 7621645 intron CG34127 - chr3R_4_7620001 chr3R_7620001 RAL-310 745 chr3R 7677914 7677945 chr3R 7678026 7678058 6 110 0.0 0.5 0.2 5.0 144 chr3R 7677914 intron Nlg1 + chr3R 7677986 intron Nlg1 + chr3R 7678058 intron Nlg1 + chr3R_6_7675001 chr3R_7675001 RAL-310 746 chr3R 7724443 7724472 chr3R 7724532 7724535 8 82 3.0 1.5 2.2 2.5 92 chr3R 7724443 3` UTR CG2616 + chr3R 7724489 3` UTR CG2616 + chr3R 7724535 3` UTR CG2616 + chr3R_8_7720001 chr3R_7720001 RAL-310 747 chr3R 7729479 7729497 chr3R 7737403 7737434 Stalker2 4 7934 1.0 1.5 1.2 1.8 7955 chr3R 7729479 intergenic not near genes chr3R 7733456 intergenic not near genes chr3R 7737434 intergenic not near genes chr3R_4_7730001 chr3R_7730001 RAL-310 748 chr3R 7821716 7821739 chr3R 7821812 7821835 8 95 4.0 2.0 3.0 2.0 119 chr3R 7821716 intron CG34384 + chr3R 7821776 intron CG34384 + chr3R 7821835 intron CG34384 + chr3R_8_7820001 chr3R_7820001 RAL-310 749 chr3R 8081147 8081182 chr3R 8081225 8081245 8 70 2.0 2.5 2.2 2.5 98 chr3R 8081147 intron mAChR-B + chr3R 8081196 intron mAChR-B + chr3R 8081245 intron mAChR-B + chr3R_8_8080001 chr3R_8080001 RAL-310 750 chr3R 8094407 8094436 chr3R 8099712 8099741 Transpac 7 5304 1.5 2.5 2.0 2.3 5334 chr3R 8094407 intron CG7900 + chr3R 8097074 intron CG7900 + chr3R 8099741 intron CG7900 + chr3R_7_8095001 chr3R_8095001 RAL-310 751 chr3R 8101769 8101788 chr3R 8104849 8104872 G2 8 3078 4.5 0.5 2.5 2.3 3103 chr3R 8101769 exon CG7900 + chr3R 8103320 intron CG7900 + chr3R 8104872 3` UTR CG7900 + chr3R_8_8100001 chr3R_8100001 RAL-310 752 chr3R 8144763 8144787 chr3R 8144847 8144847 5 78 3.0 4.5 3.8 1.0 84 chr3R 8144763 intergenic not near genes chr3R 8144805 intergenic not near genes chr3R 8144847 intergenic not near genes chr3R_5_8140001 chr3R_8140001 RAL-310 753 chr3R 8273734 8273768 chr3R 8273821 8273855 6 83 1.5 3.0 2.2 1.9 121 chr3R 8273734 intergenic not near genes chr3R 8273794 intergenic not near genes chr3R 8273855 intergenic not near genes chr3R_6_8270001 chr3R_8270001 RAL-310 754 chr3R 8339241 8339247 chr3R 21907535 21907536 7 13568290 17.5 16.5 17.0 0.4 13568295 chr3R 8339241 intergenic not near genes chr3R 15123388 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_7_15120001 chr3R_15120001 RAL-310 755 chr3R 8393579 8393604 chr3R 8393663 8393678 8 78 1.5 2.5 2.0 2.7 99 chr3R 8393579 intron CG45263 - chr3R 8393628 intron CG45263 - chr3R 8393678 intron CG45263 - chr3R_8_8390001 chr3R_8390001 RAL-310 756 chr3R 8395475 8395503 chr3R 8395656 8395684 7 180 3.5 1.5 2.5 2.0 209 chr3R 8395475 intron CG45263 - chr3R 8395580 intron CG45263 - chr3R 8395684 intron CG45263 - chr3R_7_8395001 chr3R_8395001 RAL-310 757 chr3R 8403019 8403041 chr3R 8412179 8412207 roo 10 9163 1.5 5.5 3.5 2.2 9188 chr3R 8403019 intron CG45263 - chr3R 8407613 intron CG45263 - chr3R 8412207 intron CG45263 - chr3R_10_8405001 chr3R_8405001 RAL-310 758 chr3R 8570488 8570503 chr3R 8575124 8575139 HMS-Beagle 5 4636 4.5 3.0 3.8 1.0 4651 chr3R 8570488 intergenic not near genes chr3R 8572814 intergenic not near genes chr3R 8575139 intergenic not near genes chr3R_5_8570001 chr3R_8570001 RAL-310 759 chr3R 8601767 8601798 chr3R 8610920 8610945 roo 8 9148 2.5 1.0 1.8 2.9 9178 chr3R 8601767 intron 5-HT2B + chr3R 8606356 intron 5-HT2B + chr3R 8610945 intron 5-HT2B + chr3R_8_8605001 chr3R_8605001 RAL-310 760 chr3R 8707355 8707382 chr3R 8709796 8709823 jockey 6 2440 4.0 4.5 4.2 1.2 2468 chr3R 8707355 intergenic not near genes chr3R 8708589 intergenic not near genes chr3R 8709823 intergenic not near genes chr3R_6_8705001 chr3R_8705001 RAL-310 761 chr3R 8798648 8798676 chr3R 8798731 8798759 4 80 1.0 1.5 1.2 1.8 111 chr3R 8798648 intron,intron Pif1A -,Pif1B - chr3R 8798704 intron,intron Pif1A -,Pif1B - chr3R 8798759 intron,intron Pif1A -,Pif1B - chr3R_4_8795001 chr3R_8795001 RAL-310 762 chr3R 8856372 8856388 chr3R 8856449 8856465 4 77 0.0 1.5 0.8 2.2 93 chr3R 8856372 intron pyd - chr3R 8856418 intron pyd - chr3R 8856465 intron pyd - chr3R_4_8855001 chr3R_8855001 RAL-310 763 chr3R 8917891 8917905 chr3R 8917971 8917984 4 79 1.5 1.5 1.5 1.6 93 chr3R 8917891 intron pyd - chr3R 8917938 intron pyd - chr3R 8917984 intron pyd - chr3R_4_8915001 chr3R_8915001 RAL-310 764 chr3R 9127077 9127110 chr3R 9127163 9127193 7 82 2.5 3.0 2.8 1.8 116 chr3R 9127077 intron pum - chr3R 9127135 intron pum - chr3R 9127193 intron pum - chr3R_7_9125001 chr3R_9125001 RAL-310 765 chr3R 9278781 9278810 chr3R 9284041 9284053 Rt1a 9 5257 3.5 4.5 4.0 1.8 5272 chr3R 9278781 intergenic not near genes chr3R 9281417 intergenic not near genes chr3R 9284053 intergenic not near genes chr3R_9_9280001 chr3R_9280001 RAL-310 766 chr3R 9313325 9313341 chr3R 9313410 9313427 4 86 1.0 2.0 1.5 1.6 102 chr3R 9313325 intron CG8861 - chr3R 9313376 intron CG8861 - chr3R 9313427 intron CG8861 - chr3R_4_9310001 chr3R_9310001 RAL-310 767 chr3R 9319593 9319607 chr3R 9320028 9320042 jockey 5 434 1.0 2.5 1.8 1.8 449 chr3R 9319593 intron CG8861 - chr3R 9319818 intron CG8861 - chr3R 9320042 intron CG8861 - chr3R_5_9315001 chr3R_9315001 RAL-310 768 chr3R 9390543 9390563 chr3R 9390627 9390647 6 84 3.0 2.0 2.5 1.7 104 chr3R 9390543 intron FER - chr3R 9390595 intron FER - chr3R 9390647 intron FER - chr3R_6_9390001 chr3R_9390001 RAL-310 769 chr3R 9425893 9425916 chr3R 9426067 9426089 12 171 2.5 5.0 3.8 2.5 196 chr3R 9425893 intron ps + chr3R 9425991 intron ps + chr3R 9426089 intron ps + chr3R_12_9425001 chr3R_9425001 RAL-310 770 chr3R 9601473 9601486 chr3R 9601580 9601604 6 115 2.0 1.0 1.5 2.4 131 chr3R 9601473 intron CG8312 + chr3R 9601538 intron CG8312 + chr3R 9601604 intron CG8312 + chr3R_6_9600001 chr3R_9600001 RAL-310 771 chr3R 9699972 9699995 chr3R 9700061 9700083 1360 5 88 1.5 3.0 2.2 1.6 111 chr3R 9699972 intron Unc-115a - chr3R 9700028 intron Unc-115a - chr3R 9700083 intron Unc-115a - chr3R_5_9700001 chr3R_9700001 RAL-310 772 chr3R 9702265 9702295 chr3R 9702341 9702370 10 74 2.5 2.5 2.5 2.9 105 chr3R 9702265 intron Unc-115a - chr3R 9702318 intron Unc-115a - chr3R 9702370 intron Unc-115a - chr3R_10_9700001 chr3R_9700001 RAL-310 773 chr3R 9859716 9859728 chr3R 9859783 9859804 6 74 2.5 5.0 3.8 1.2 88 chr3R 9859716 intron Teh1 - chr3R 9859760 intron Teh1 - chr3R 9859804 intron Teh1 - chr3R_6_9855001 chr3R_9855001 RAL-310 774 chr3R 10073773 10073801 chr3R 10073879 10073893 10 106 0.0 0.0 0.0 10.0 120 chr3R 10073773 intergenic nerfin-2 +,CG5361 - chr3R 10073833 3` UTR CG5361 - chr3R 10073893 exon CG5361 - chr3R_10_10070001 chr3R_10070001 RAL-310 775 chr3R 10160460 10160482 chr3R 10160555 10160566 7 93 5.0 7.0 6.0 1.0 106 chr3R 10160460 exon CG6254 - chr3R 10160513 exon CG6254 - chr3R 10160566 exon CG6254 - chr3R_7_10160001 chr3R_10160001 RAL-310 776 chr3R 10430685 10430702 chr3R 10430774 10430791 6 88 3.5 4.0 3.8 1.2 106 chr3R 10430685 intergenic not near genes chr3R 10430738 intergenic not near genes chr3R 10430791 intergenic not near genes chr3R_6_10430001 chr3R_10430001 RAL-310 777 chr3R 10474765 10474785 chr3R 10474862 10474888 5 98 3.5 2.5 3.0 1.2 123 chr3R 10474765 intergenic not near genes chr3R 10474826 intergenic not near genes chr3R 10474888 intergenic not near genes chr3R_5_10470001 chr3R_10470001 RAL-310 778 chr3R 10531871 10531895 chr3R 10531952 10531976 6 80 3.5 1.0 2.2 1.9 105 chr3R 10531871 intron hth - chr3R 10531924 intron hth - chr3R 10531976 intron hth - chr3R_6_10530001 chr3R_10530001 RAL-310 779 chr3R 10593449 10593462 chr3R 10593517 10593541 5 79 0.0 0.5 0.2 4.2 92 chr3R 10593449 intron hth - chr3R 10593495 intron hth - chr3R 10593541 intron hth - chr3R_5_10590001 chr3R_10590001 RAL-310 780 chr3R 10723768 10723779 chr3R 10723860 10723870 6 92 2.5 0.5 1.5 2.4 102 chr3R 10723768 intergenic not near genes chr3R 10723819 intergenic not near genes chr3R 10723870 intergenic not near genes chr3R_6_10720001 chr3R_10720001 RAL-310 781 chr3R 10727646 10727658 chr3R 10727726 10727738 11 78 6.5 7.0 6.8 1.4 92 chr3R 10727646 intergenic not near genes chr3R 10727692 intergenic not near genes chr3R 10727738 intergenic not near genes chr3R_11_10725001 chr3R_10725001 RAL-310 782 chr3R 10745426 10745454 chr3R 10745512 10745541 6 84 3.5 3.5 3.5 1.3 115 chr3R 10745426 intron TkR86C - chr3R 10745484 intron TkR86C - chr3R 10745541 intron TkR86C - chr3R_6_10745001 chr3R_10745001 RAL-310 783 chr3R 10899468 10899478 chr3R 10899523 10899544 5 63 2.5 1.5 2.0 1.7 76 chr3R 10899468 intergenic not near genes chr3R 10899506 intergenic not near genes chr3R 10899544 intergenic not near genes chr3R_5_10895001 chr3R_10895001 RAL-310 784 chr3R 10927274 10927307 chr3R 10927602 10927635 6 324 2.0 1.0 1.5 2.4 361 chr3R 10927274 intergenic not near genes chr3R 10927454 intergenic not near genes chr3R 10927635 intergenic not near genes chr3R_6_10925001 chr3R_10925001 RAL-310 785 chr3R 10979658 10979677 chr3R 10979740 10979758 5 81 2.5 4.0 3.2 1.2 100 chr3R 10979658 intron CG34114 + chr3R 10979708 intron CG34114 + chr3R 10979758 intron CG34114 + chr3R_5_10975001 chr3R_10975001 RAL-310 786 chr3R 11043097 11043117 chr3R 11043203 11043213 5 103 2.5 0.5 1.5 2.0 116 chr3R 11043097 intron CG34114 + chr3R 11043155 intron CG34114 + chr3R 11043213 intron CG34114 + chr3R_5_11040001 chr3R_11040001 RAL-310 787 chr3R 11284942 11284954 chr3R 11285024 11285035 4 80 5.5 3.5 4.5 0.7 93 chr3R 11284942 intron CR31386 - chr3R 11284988 intron CR31386 - chr3R 11285035 intron CR31386 - chr3R_4_11280001 chr3R_11280001 RAL-310 788 chr3R 11325346 11325369 chr3R 11325440 11325458 4 93 2.0 5.5 3.8 0.8 112 chr3R 11325346 intergenic not near genes chr3R 11325402 intergenic not near genes chr3R 11325458 intergenic not near genes chr3R_4_11325001 chr3R_11325001 RAL-310 789 chr3R 11509025 11509049 chr3R 11509523 11509546 4 498 5.0 1.0 3.0 1.0 521 chr3R 11509025 intergenic not near genes chr3R 11509286 intergenic not near genes chr3R 11509546 intergenic not near genes chr3R_4_11505001 chr3R_11505001 RAL-310 790 chr3R 11518820 11518841 chr3R 11518905 11518931 7 90 1.0 2.5 1.8 2.5 111 chr3R 11518820 intergenic not near genes chr3R 11518876 intergenic not near genes chr3R 11518931 intergenic not near genes chr3R_7_11515001 chr3R_11515001 RAL-310 791 chr3R 11551173 11551200 chr3R 11551253 11551285 9 82 3.5 1.0 2.2 2.8 112 chr3R 11551173 intergenic not near genes chr3R 11551229 intergenic not near genes chr3R 11551285 intergenic not near genes chr3R_9_11550001 chr3R_11550001 RAL-310 792 chr3R 11558352 11558374 chr3R 11560677 11560710 8 2332 22.0 17.5 19.8 0.4 2358 chr3R 11558352 5` UTR CG10898 + chr3R 11559531 3` UTR CG10898 + chr3R 11560710 3` UTR,exon fabp -,sea - chr3R_8_11555001 chr3R_11555001 RAL-310 793 chr3R 11571827 11571845 chr3R 11571923 11571941 5 96 1.5 0.5 1.0 2.5 114 chr3R 11571827 intron Mrp4 + chr3R 11571884 intron Mrp4 + chr3R 11571941 intron Mrp4 + chr3R_5_11570001 chr3R_11570001 RAL-310 794 chr3R 11589758 11589793 chr3R 11589861 11589896 10 101 2.5 3.5 3.0 2.5 138 chr3R 11589758 exon CG6791 - chr3R 11589827 5` UTR CG6791 - chr3R 11589896 5` UTR CG6791 - chr3R_10_11585001 chr3R_11585001 RAL-310 795 chr3R 11710204 11710237 chr3R 11710282 11710314 12 78 2.5 2.0 2.2 3.8 110 chr3R 11710204 intergenic not near genes chr3R 11710259 intergenic not near genes chr3R 11710314 intergenic not near genes chr3R_12_11710001 chr3R_11710001 RAL-310 796 chr3R 11734171 11734184 chr3R 11734279 11734282 5 109 1.5 1.0 1.2 2.3 111 chr3R 11734171 intergenic not near genes chr3R 11734226 intergenic not near genes chr3R 11734282 intergenic not near genes chr3R_5_11730001 chr3R_11730001 RAL-310 797 chr3R 11841060 11841099 chr3R 11846251 11846290 BS 8 5189 2.5 2.5 2.5 2.3 5230 chr3R 11841060 intron CG6959 - chr3R 11843675 intron CG6959 - chr3R 11846290 intron CG6959 - chr3R_8_11840001 chr3R_11840001 RAL-310 798 chr3R 11919302 11919332 chr3R 11919390 11919391 7 74 3.5 1.5 2.5 2.0 89 chr3R 11919302 intron Cad87A - chr3R 11919346 intron Cad87A - chr3R 11919391 intron Cad87A - chr3R_7_11915001 chr3R_11915001 RAL-310 799 chr3R 11945389 11945405 chr3R 11945487 11945503 4 98 1.5 2.5 2.0 1.3 114 chr3R 11945389 intron Cad87A - chr3R 11945446 intron Cad87A - chr3R 11945503 intron Cad87A - chr3R_4_11945001 chr3R_11945001 RAL-310 800 chr3R 12080868 12080894 chr3R 12080945 12080971 10 76 6.5 2.5 4.5 1.8 103 chr3R 12080868 intron CG14741 - chr3R 12080920 intron CG14741 - chr3R 12080971 intron CG14741 - chr3R_10_12080001 chr3R_12080001 RAL-310 801 chr3R 12135506 12135534 chr3R 12135745 12135767 11 234 1.5 3.5 2.5 3.1 261 chr3R 12135506 intergenic not near genes chr3R 12135636 intergenic not near genes chr3R 12135767 intergenic not near genes chr3R_11_12135001 chr3R_12135001 RAL-310 802 chr3R 12214361 12214368 chr3R 12214429 12214459 5 84 4.5 3.5 4.0 1.0 98 chr3R 12214361 3` UTR CG4848 - chr3R 12214410 3` UTR CG4848 - chr3R 12214459 3` UTR CG4848 - chr3R_5_12210001 chr3R_12210001 RAL-310 803 chr3R 12306371 12306388 chr3R 12306465 12306482 5 92 2.5 3.5 3.0 1.2 111 chr3R 12306371 intergenic not near genes chr3R 12306426 intergenic not near genes chr3R 12306482 intergenic not near genes chr3R_5_12305001 chr3R_12305001 RAL-310 804 chr3R 12307231 12307263 chr3R 12307314 12307346 7 81 1.5 1.5 1.5 2.8 115 chr3R 12307231 intergenic not near genes chr3R 12307288 intergenic not near genes chr3R 12307346 intergenic not near genes chr3R_7_12305001 chr3R_12305001 RAL-310 805 chr3R 12365719 12365749 chr3R 12365799 12365826 6 78 1.5 0.0 0.8 3.3 107 chr3R 12365719 5` UTR GstD10 - chr3R 12365772 intergenic GstD10 -,GstD9 - chr3R 12365826 intergenic GstD10 -,GstD9 - chr3R_6_12365001 chr3R_12365001 RAL-310 806 chr3R 12376400 12376413 chr3R 12376483 12376495 4 84 3.0 0.5 1.8 1.4 95 chr3R 12376400 exon GstD5 + chr3R 12376448 3` UTR GstD5 + chr3R 12376495 3` UTR GstD5 + chr3R_4_12375001 chr3R_12375001 RAL-310 807 chr3R 12546458 12546483 chr3R 12546540 12546553 7 80 4.5 2.5 3.5 1.6 95 chr3R 12546458 intron Octbeta3R - chr3R 12546506 intron Octbeta3R - chr3R 12546553 intron Octbeta3R - chr3R_7_12545001 chr3R_12545001 RAL-310 808 chr3R 12619896 12619909 chr3R 12619973 12619975 5 77 2.5 3.0 2.8 1.3 79 chr3R 12619896 intergenic CR44942 - chr3R 12619936 intergenic not near genes chr3R 12619975 intergenic not near genes chr3R_5_12615001 chr3R_12615001 RAL-310 809 chr3R 12920168 12920185 chr3R 12925361 12925385 copia 9 5201 0.0 4.5 2.2 2.8 5217 chr3R 12920168 intron beat-Vb + chr3R 12922776 intron beat-Vb + chr3R 12925385 intron beat-Vb + chr3R_9_12920001 chr3R_12920001 RAL-310 810 chr3R 13143042 13143066 chr3R 13148618 13148642 mdg3 7 5575 1.0 3.0 2.0 2.3 5600 chr3R 13143042 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13145842 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13148642 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_7_13145001 chr3R_13145001 RAL-310 811 chr3R 13205411 13205439 chr3R 13205491 13205512 8 77 2.0 2.5 2.2 2.5 101 chr3R 13205411 intergenic not near genes chr3R 13205462 intergenic not near genes chr3R 13205512 intergenic not near genes chr3R_8_13205001 chr3R_13205001 RAL-310 812 chr3R 13206658 13206673 chr3R 13206895 13206910 8 237 3.5 2.5 3.0 2.0 252 chr3R 13206658 intergenic not near genes chr3R 13206784 intergenic not near genes chr3R 13206910 intergenic not near genes chr3R_8_13205001 chr3R_13205001 RAL-310 813 chr3R 13274214 13274249 chr3R 13274292 13274309 7 73 2.0 4.5 3.2 1.7 95 chr3R 13274214 intergenic not near genes chr3R 13274262 intergenic not near genes chr3R 13274309 intergenic not near genes chr3R_7_13270001 chr3R_13270001 RAL-310 814 chr3R 13276994 13277025 chr3R 13277082 13277099 8 86 0.5 6.5 3.5 1.8 105 chr3R 13276994 intergenic not near genes chr3R 13277046 intergenic not near genes chr3R 13277099 intergenic not near genes chr3R_8_13275001 chr3R_13275001 RAL-310 815 chr3R 13376276 13376302 chr3R 13376361 13376389 6 86 1.0 2.5 1.8 2.1 113 chr3R 13376276 intron CG9813 - chr3R 13376332 intron CG9813 - chr3R 13376389 intron CG9813 - chr3R_6_13375001 chr3R_13375001 RAL-310 816 chr3R 13380731 13380751 chr3R 13380807 13380838 5 84 1.0 0.5 0.8 2.8 107 chr3R 13380731 exon CG8870 + chr3R 13380784 exon CG8870 + chr3R 13380838 intron CG8870 + chr3R_5_13380001 chr3R_13380001 RAL-310 817 chr3R 13598086 13598107 chr3R 13598164 13598174 4 75 1.5 1.5 1.5 1.6 88 chr3R 13598086 intergenic not near genes chr3R 13598130 intergenic not near genes chr3R 13598174 intergenic not near genes chr3R_4_13595001 chr3R_13595001 RAL-310 818 chr3R 13693028 13693028 chr3R 21907534 21907536 7 8214507 4.5 16.5 10.5 0.6 8214508 chr3R 13693028 3` UTR flfl + chr3R 17800282 exon CG17803 - chr3R 21907536 intergenic CG6678 + chr3R_7_17800001 chr3R_17800001 RAL-310 819 chr3R 13830756 13830764 chr3R 13830920 13830926 4 164 3.0 2.0 2.5 1.1 170 chr3R 13830756 intergenic not near genes chr3R 13830841 intergenic not near genes chr3R 13830926 intergenic not near genes chr3R_4_13830001 chr3R_13830001 RAL-310 820 chr3R 14014276 14014282 chr3R 14014408 14014414 4 132 4.5 0.0 2.2 1.2 138 chr3R 14014276 intron rdx - chr3R 14014345 intron rdx - chr3R 14014414 intron rdx - chr3R_4_14010001 chr3R_14010001 RAL-310 821 chr3R 14021645 14021662 chr3R 14023470 14023486 S-element 4 1825 3.0 2.5 2.8 1.1 1841 chr3R 14021645 intron rdx - chr3R 14022566 intron rdx - chr3R 14023486 intron rdx - chr3R_4_14020001 chr3R_14020001 RAL-310 822 chr3R 14194439 14194455 chr3R 14203575 14203603 roo 5 9144 3.5 1.0 2.2 1.6 9164 chr3R 14194439 intron Dop1R1 - chr3R 14199021 intron Dop1R1 - chr3R 14203603 intron Dop1R1 - chr3R_5_14195001 chr3R_14195001 RAL-310 823 chr3R 14546043 14546073 chr3R 14546120 14546149 4 77 1.0 1.0 1.0 2.0 106 chr3R 14546043 intron Pde6 - chr3R 14546096 intron Pde6 - chr3R 14546149 intron Pde6 - chr3R_4_14545001 chr3R_14545001 RAL-310 824 chr3R 14579354 14579386 chr3R 14579443 14579446 7 83 2.0 4.5 3.2 1.7 92 chr3R 14579354 intron stumps + chr3R 14579400 intron stumps + chr3R 14579446 intron stumps + chr3R_7_14575001 chr3R_14575001 RAL-310 825 chr3R 14704390 14704411 chr3R 14704461 14704487 4 75 1.0 0.0 0.5 2.7 97 chr3R 14704390 intron kibra - chr3R 14704438 intron kibra - chr3R 14704487 intron kibra - chr3R_4_14700001 chr3R_14700001 RAL-310 826 chr3R 15037011 15037038 chr3R 15037091 15037121 9 83 2.0 2.0 2.0 3.0 110 chr3R 15037011 intergenic RpL10Aa + chr3R 15037066 intergenic RpL10Aa + chr3R 15037121 intergenic RpL10Aa + chr3R_9_15035001 chr3R_15035001 RAL-310 827 chr3R 15049472 15049478 chr3R 15049585 15049591 4 118 6.0 4.5 5.2 0.6 119 chr3R 15049472 intergenic not near genes chr3R 15049532 intergenic not near genes chr3R 15049591 intergenic not near genes chr3R_4_15045001 chr3R_15045001 RAL-310 828 chr3R 15049482 15049487 chr3R 15049580 15049613 4 119 4.0 4.0 4.0 0.8 131 chr3R 15049482 intergenic not near genes chr3R 15049548 intergenic not near genes chr3R 15049613 intergenic not near genes chr3R_4_15045001 chr3R_15045001 RAL-310 829 chr3R 15132062 15132085 chr3R 15135121 15135126 Juan 8 3056 3.0 4.0 3.5 1.8 3064 chr3R 15132062 intergenic CG42788 - chr3R 15133594 intergenic not near genes chr3R 15135126 intergenic CG6912 - chr3R_8_15130001 chr3R_15130001 RAL-310 830 chr3R 15162542 15162556 chr3R 15167310 15167322 F-element 6 4768 1.0 0.0 0.5 4.0 4780 chr3R 15162542 intron Gyc88E + chr3R 15164932 intron Gyc88E + chr3R 15167322 intron Gyc88E + chr3R_6_15160001 chr3R_15160001 RAL-310 831 chr3R 15286988 15286988 chr3R 21907534 21907536 5 6620547 15.0 16.5 15.8 0.3 6620548 chr3R 15286988 intron Tm1 + chr3R 18597262 intron,exon qin +,CG14304 - chr3R 21907536 intergenic CG6678 + chr3R_5_18595001 chr3R_18595001 RAL-310 832 chr3R 15416253 15416280 chr3R 15416333 15416360 5 77 3.0 3.5 3.2 1.2 107 chr3R 15416253 3` UTR Atx2 + chr3R 15416306 3` UTR Atx2 + chr3R 15416360 3` UTR Atx2 + chr3R_5_15415001 chr3R_15415001 RAL-310 833 chr3R 15462911 15462937 chr3R 15462993 15463006 13 84 1.5 2.0 1.8 4.6 95 chr3R 15462911 intron AdamTS-A - chr3R 15462958 intron AdamTS-A - chr3R 15463006 intron AdamTS-A - chr3R_13_15460001 chr3R_15460001 RAL-310 834 chr3R 15601167 15601195 chr3R 15608689 15608717 412 9 7521 2.5 1.0 1.8 3.2 7550 chr3R 15601167 intergenic not near genes chr3R 15604942 intergenic not near genes chr3R 15608717 intergenic not near genes chr3R_9_15600001 chr3R_15600001 RAL-310 835 chr3R 15632893 15632904 chr3R 15633007 15633017 5 115 2.0 3.5 2.8 1.3 124 chr3R 15632893 intergenic not near genes chr3R 15632955 intergenic not near genes chr3R 15633017 intergenic not near genes chr3R_5_15630001 chr3R_15630001 RAL-310 836 chr3R 15641809 15641830 chr3R 15641976 15642000 5 168 1.5 2.5 2.0 1.7 191 chr3R 15641809 intergenic not near genes chr3R 15641904 intergenic not near genes chr3R 15642000 intergenic not near genes chr3R_5_15640001 chr3R_15640001 RAL-310 837 chr3R 15691180 15691329 chr3R 15691285 15691416 5 94 0.5 0.5 0.5 3.3 236 chr3R 15691180 intergenic not near genes chr3R 15691298 intergenic not near genes chr3R 15691416 intergenic not near genes chr3R_5_15690001 chr3R_15690001 RAL-310 838 chr3R 15734175 15734199 chr3R 15734261 15734285 5 82 1.0 3.0 2.0 1.7 110 chr3R 15734175 intergenic not near genes chr3R 15734230 intergenic not near genes chr3R 15734285 intergenic not near genes chr3R_5_15730001 chr3R_15730001 RAL-310 839 chr3R 15790142 15790264 chr3R 15790246 15790382 7 103 1.0 2.5 1.8 2.5 240 chr3R 15790142 exon c(3)G - chr3R 15790262 exon c(3)G - chr3R 15790382 exon c(3)G - chr3R_7_15790001 chr3R_15790001 RAL-310 840 chr3R 15868942 15868968 chr3R 15869022 15869047 4 80 1.0 0.0 0.5 2.7 105 chr3R 15868942 intron CG31183 - chr3R 15868994 intron CG31183 - chr3R 15869047 intron CG31183 - chr3R_4_15865001 chr3R_15865001 RAL-310 841 chr3R 15880475 15880505 chr3R 15880648 15880679 5 174 0.0 1.0 0.5 3.3 204 chr3R 15880475 intergenic not near genes chr3R 15880577 intergenic not near genes chr3R 15880679 intergenic not near genes chr3R_5_15880001 chr3R_15880001 RAL-310 842 chr3R 15984514 15984532 chr3R 15984616 15984633 4 102 0.5 1.5 1.0 2.0 119 chr3R 15984514 intergenic not near genes chr3R 15984574 intergenic not near genes chr3R 15984633 intergenic not near genes chr3R_4_15980001 chr3R_15980001 RAL-310 843 chr3R 16889976 16889988 chr3R 16890053 16890065 5 76 2.0 6.0 4.0 1.0 89 chr3R 16889976 intron iab-8 - chr3R 16890020 intron iab-8 - chr3R 16890065 intron iab-8 - chr3R_5_16890001 chr3R_16890001 RAL-310 844 chr3R 17261367 17261397 chr3R 17261978 17262004 8 608 4.5 1.5 3.0 2.0 637 chr3R 17261367 intron beat-IIb - chr3R 17261686 intron beat-IIb - chr3R 17262004 intron beat-IIb - chr3R_8_17260001 chr3R_17260001 RAL-310 845 chr3R 17463262 17463281 chr3R 17463542 17463566 4 284 0.5 1.5 1.0 2.0 304 chr3R 17463262 intergenic not near genes chr3R 17463414 intergenic not near genes chr3R 17463566 intergenic not near genes chr3R_4_17460001 chr3R_17460001 RAL-310 846 chr3R 17472317 17472346 chr3R 17472422 17472423 8 101 2.0 2.5 2.2 2.5 106 chr3R 17472317 intergenic not near genes chr3R 17472370 intergenic not near genes chr3R 17472423 intergenic not near genes chr3R_8_17470001 chr3R_17470001 RAL-310 847 chr3R 17714767 17714791 chr3R 17714869 17714871 6 99 2.0 2.5 2.2 1.9 104 chr3R 17714767 intron osa - chr3R 17714819 intron osa - chr3R 17714871 intron osa - chr3R_6_17710001 chr3R_17710001 RAL-310 848 chr3R 17773379 17773388 chr3R 17773474 17773482 4 95 0.5 2.5 1.5 1.6 103 chr3R 17773379 intron CG43102 - chr3R 17773430 intron CG43102 - chr3R 17773482 exon CG43102 - chr3R_4_17770001 chr3R_17770001 RAL-310 849 chr3R 17845204 17845216 chr3R 17845264 17845287 5 65 5.0 5.0 5.0 0.8 83 chr3R 17845204 intron tinc + chr3R 17845246 intron tinc + chr3R 17845287 intron tinc + chr3R_5_17845001 chr3R_17845001 RAL-310 850 chr3R 17849814 17849832 chr3R 17849990 17849995 4 173 5.5 2.0 3.8 0.8 181 chr3R 17849814 intron tinc + chr3R 17849904 intron tinc + chr3R 17849995 intron tinc + chr3R_4_17845001 chr3R_17845001 RAL-310 851 chr3R 17925851 17925866 chr3R 17927318 17927332 hobo 7 1465 7.5 7.5 7.5 0.8 1481 chr3R 17925851 intron cpo + chr3R 17926592 intron cpo + chr3R 17927332 intron cpo + chr3R_7_17925001 chr3R_17925001 RAL-310 852 chr3R 18464328 18464340 chr3R 18464467 18464479 4 138 0.0 4.5 2.2 1.2 151 chr3R 18464328 intron fru - chr3R 18464404 intron fru - chr3R 18464479 intron fru - chr3R_4_18460001 chr3R_18460001 RAL-310 853 chr3R 18501598 18501620 chr3R 18501678 18501701 6 79 3.5 1.5 2.5 1.7 103 chr3R 18501598 intron fru - chr3R 18501650 intron fru - chr3R 18501701 intron fru - chr3R_6_18500001 chr3R_18500001 RAL-310 854 chr3R 18537765 18537781 chr3R 18537866 18537877 5 95 1.0 4.5 2.8 1.3 112 chr3R 18537765 intron fru - chr3R 18537821 intron fru - chr3R 18537877 intron fru - chr3R_5_18535001 chr3R_18535001 RAL-310 855 chr3R 18695761 18695771 chr3R 18695846 18695856 6 85 1.5 0.0 0.8 3.3 95 chr3R 18695761 3` UTR CG34282 + chr3R 18695808 intergenic CG34282 + chr3R 18695856 intergenic CG34282 + chr3R_6_18695001 chr3R_18695001 RAL-310 856 chr3R 18730025 18730036 chr3R 18730100 18730111 7 75 3.0 2.5 2.8 1.8 86 chr3R 18730025 intron Cha + chr3R 18730068 intron Cha + chr3R 18730111 exon Cha + chr3R_7_18730001 chr3R_18730001 RAL-310 857 chr3R 18781699 18781721 chr3R 18781775 18781797 4 76 2.0 2.0 2.0 1.3 98 chr3R 18781699 intron CG7720 - chr3R 18781748 intron CG7720 - chr3R 18781797 intron CG7720 - chr3R_4_18780001 chr3R_18780001 RAL-310 858 chr3R 18808502 18808508 chr3R 18808553 18808585 6 72 1.0 3.5 2.2 1.9 83 chr3R 18808502 intron CG18208 - chr3R 18808544 intron CG18208 - chr3R 18808585 intron CG18208 - chr3R_6_18805001 chr3R_18805001 RAL-310 859 chr3R 18812081 18812088 chr3R 18812159 18812165 4 78 7.0 5.0 6.0 0.6 84 chr3R 18812081 intron CG18208 - chr3R 18812123 intron CG18208 - chr3R 18812165 intron CG18208 - chr3R_4_18810001 chr3R_18810001 RAL-310 860 chr3R 18812091 18812107 chr3R 18812155 18812185 11 75 3.5 4.5 4.0 2.2 94 chr3R 18812091 intron CG18208 - chr3R 18812138 intron CG18208 - chr3R 18812185 intron CG18208 - chr3R_11_18810001 chr3R_18810001 RAL-310 861 chr3R 18866478 18866492 chr3R 18866570 18866582 5 91 1.5 1.0 1.2 2.3 104 chr3R 18866478 intergenic not near genes chr3R 18866530 intergenic not near genes chr3R 18866582 intergenic not near genes chr3R_5_18865001 chr3R_18865001 RAL-310 862 chr3R 19106820 19106850 chr3R 19106910 19106919 5 83 4.5 0.0 2.2 1.6 99 chr3R 19106820 intron CG6040 + chr3R 19106870 intron CG6040 + chr3R 19106919 intron CG6040 + chr3R_5_19105001 chr3R_19105001 RAL-310 863 chr3R 19340416 19340422 chr3R 19340493 19340499 4 77 3.0 2.0 2.5 1.1 83 chr3R 19340416 intergenic not near genes chr3R 19340458 intergenic not near genes chr3R 19340499 intergenic not near genes chr3R_4_19340001 chr3R_19340001 RAL-310 864 chr3R 19396377 19396386 chr3R 19396455 19396470 4 84 2.5 3.0 2.8 1.1 93 chr3R 19396377 intron Ino80 - chr3R 19396424 intron Ino80 - chr3R 19396470 intron Ino80 - chr3R_4_19395001 chr3R_19395001 RAL-310 865 chr3R 19531365 19531396 chr3R 19531468 19531496 11 101 3.0 0.5 1.8 3.9 131 chr3R 19531365 intron Dys + chr3R 19531430 intron Dys + chr3R 19531496 intron Dys + chr3R_11_19530001 chr3R_19530001 RAL-310 866 chr3R 19542873 19542903 chr3R 19543001 19543031 10 126 1.0 2.0 1.5 4.0 158 chr3R 19542873 intron Dys + chr3R 19542952 intron Dys + chr3R 19543031 intron Dys + chr3R_10_19540001 chr3R_19540001 RAL-310 867 chr3R 19604679 19604708 chr3R 19604812 19604841 12 132 1.5 1.5 1.5 4.8 162 chr3R 19604679 exon CG7342 + chr3R 19604760 intron CG7342 + chr3R 19604841 intron CG7342 + chr3R_12_19600001 chr3R_19600001 RAL-310 868 chr3R 19630520 19630546 chr3R 19630620 19630647 5 98 5.0 1.5 3.2 1.2 127 chr3R 19630520 intron CG6231 - chr3R 19630584 intron CG6231 - chr3R 19630647 intron CG6231 - chr3R_5_19630001 chr3R_19630001 RAL-310 869 chr3R 19735708 19735741 chr3R 19735814 19735847 8 105 1.5 3.0 2.2 2.5 139 chr3R 19735708 intron GluClalpha + chr3R 19735778 intron GluClalpha + chr3R 19735847 intron GluClalpha + chr3R_8_19735001 chr3R_19735001 RAL-310 870 chr3R 20118036 20118215 chr3R 20118122 20118289 5 76 2.5 9.0 5.8 0.7 253 chr3R 20118036 intergenic not near genes chr3R 20118162 intergenic not near genes chr3R 20118289 intergenic not near genes chr3R_5_20115001 chr3R_20115001 RAL-310 871 chr3R 20256858 20256867 chr3R 20256936 20256945 4 78 0.0 1.0 0.5 2.7 87 chr3R 20256858 intron cic + chr3R 20256902 intron cic + chr3R 20256945 intron cic + chr3R_4_20255001 chr3R_20255001 RAL-310 872 chr3R 20391448 20391461 chr3R 20391638 20391651 5 190 1.0 2.0 1.5 2.0 203 chr3R 20391448 intron Gfrl - chr3R 20391550 intron Gfrl - chr3R 20391651 intron Gfrl - chr3R_5_20390001 chr3R_20390001 RAL-310 873 chr3R 20467077 20467087 chr3R 20467153 20467163 4 74 6.5 5.0 5.8 0.6 86 chr3R 20467077 intron Gfrl - chr3R 20467120 intron Gfrl - chr3R 20467163 intron Gfrl - chr3R_4_20465001 chr3R_20465001 RAL-310 874 chr3R 20467095 20467096 chr3R 20467151 20467167 4 62 4.5 4.5 4.5 0.7 72 chr3R 20467095 intron Gfrl - chr3R 20467131 intron Gfrl - chr3R 20467167 intron Gfrl - chr3R_4_20465001 chr3R_20465001 RAL-310 875 chr3R 20467099 20467114 chr3R 20467150 20467171 5 64 3.5 4.5 4.0 1.0 72 chr3R 20467099 intron Gfrl - chr3R 20467135 intron Gfrl - chr3R 20467171 intron Gfrl - chr3R_5_20465001 chr3R_20465001 RAL-310 876 chr3R 20512347 20512359 chr3R 20512429 20512435 4 81 4.5 0.5 2.5 1.1 88 chr3R 20512347 5` UTR CG4288 - chr3R 20512391 5` UTR CG4288 - chr3R 20512435 5` UTR CG4288 - chr3R_4_20510001 chr3R_20510001 RAL-310 877 chr3R 20716808 20716838 chr3R 20717145 20717165 7 335 6.5 3.0 4.8 1.2 357 chr3R 20716808 intergenic not near genes chr3R 20716986 intergenic not near genes chr3R 20717165 intergenic not near genes chr3R_7_20715001 chr3R_20715001 RAL-310 878 chr3R 20916343 20916357 chr3R 20916466 20916496 5 135 2.0 5.0 3.5 1.1 153 chr3R 20916343 intron,intron CG31191 -,hdly + chr3R 20916420 intron,intron CG31191 -,hdly + chr3R 20916496 intron,intron CG31191 -,hdly + chr3R_5_20915001 chr3R_20915001 RAL-310 879 chr3R 21141688 21141707 chr3R 21150154 21150176 Tirant 9 8466 2.0 4.0 3.0 2.2 8488 chr3R 21141688 intron SNF4Agamma + chr3R 21145932 intron SNF4Agamma + chr3R 21150176 intron SNF4Agamma + chr3R_9_21145001 chr3R_21145001 RAL-310 880 chr3R 21472015 21472030 chr3R 21472094 21472111 6 80 4.0 0.5 2.2 1.9 96 chr3R 21472015 intergenic not near genes chr3R 21472063 intergenic not near genes chr3R 21472111 intergenic not near genes chr3R_6_21470001 chr3R_21470001 RAL-310 881 chr3R 21624104 21624111 chr3R 21624198 21624202 4 93 3.0 3.0 3.0 1.0 98 chr3R 21624104 intron E2f - chr3R 21624153 intron E2f - chr3R 21624202 intron E2f - chr3R_4_21620001 chr3R_21620001 RAL-310 882 chr3R 21734871 21734885 chr3R 21734941 21734961 4 74 2.5 0.0 1.2 1.8 90 chr3R 21734871 intergenic not near genes chr3R 21734916 intergenic not near genes chr3R 21734961 intergenic not near genes chr3R_4_21730001 chr3R_21730001 RAL-310 883 chr3R 21784858 21784888 chr3R 21784956 21784983 7 97 1.5 0.5 1.0 3.5 125 chr3R 21784858 3` UTR,3` UTR CASK -,CRG - chr3R 21784920 3` UTR,3` UTR CASK -,CRG - chr3R 21784983 3` UTR,3` UTR CASK -,CRG - chr3R_7_21780001 chr3R_21780001 RAL-310 884 chr3R 15286986 15286988 chr3R 21907534 21907534 4 6620547 15.0 16.5 15.8 0.2 6620548 chr3R 15286986 intron Tm1 + chr3R 18597260 intron,exon qin +,CG14304 - chr3R 21907534 intergenic CG6678 + chr3R_4_18595001 chr3R_18595001 RAL-310 885 chr3R 21337429 21337429 chr3R 21907534 21907534 9 570105 9.5 16.5 13.0 0.6 570105 chr3R 21337429 intron CG16791 - chr3R 21622482 intron E2f - chr3R 21907534 intergenic CG6678 + chr3R_9_21620001 chr3R_21620001 RAL-310 886 chr3R 21907534 21907534 chr3R 28831801 28831802 22 6924268 18.5 13.0 15.8 1.3 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_22_25365001 chr3R_25365001 RAL-310 887 chr3R 21907535 21907535 chr3R 28831799 28831802 25 6924266 18.5 13.0 15.8 1.5 6924267 chr3R 21907535 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_25_25365001 chr3R_25365001 RAL-310 888 chr3R 17389054 17389054 chr3R 21907536 21907536 4 4518482 9.5 17.0 13.2 0.3 4518482 chr3R 17389054 intron,3` UTR Brf -,lute + chr3R 19648295 5` UTR CG6195 - chr3R 21907536 intergenic CG6678 + chr3R_4_19645001 chr3R_19645001 RAL-310 889 chr3R 21907536 21907536 chr3R 28831801 28831803 25 6924266 18.0 13.0 15.5 1.5 6924267 chr3R 21907536 intergenic CG6678 + chr3R 25369670 intron Fur1 - chr3R 28831803 intron WASp - chr3R_25_25365001 chr3R_25365001 RAL-310 890 chr3R 21920425 21920452 chr3R 21920502 21920535 7 83 1.0 3.0 2.0 2.3 110 chr3R 21920425 intergenic not near genes chr3R 21920480 intergenic not near genes chr3R 21920535 intergenic not near genes chr3R_7_21920001 chr3R_21920001 RAL-310 891 chr3R 21983140 21983161 chr3R 21983220 21983228 5 77 4.0 2.0 3.0 1.2 88 chr3R 21983140 intron Eip93F + chr3R 21983184 intron Eip93F + chr3R 21983228 intron Eip93F + chr3R_5_21980001 chr3R_21980001 RAL-310 892 chr3R 22083653 22083679 chr3R 22083955 22083972 5 300 1.5 2.5 2.0 1.7 319 chr3R 22083653 intergenic CG13408 + chr3R 22083812 intergenic CG13408 + chr3R 22083972 intergenic CG13408 + chr3R_5_22080001 chr3R_22080001 RAL-310 893 chr3R 22153589 22153601 chr3R 22153669 22153681 5 80 1.0 4.0 2.5 1.4 92 chr3R 22153589 intron SKIP + chr3R 22153635 intron SKIP + chr3R 22153681 intron SKIP + chr3R_5_22150001 chr3R_22150001 RAL-310 894 chr3R 22264300 22264327 chr3R 22264418 22264443 6 114 3.0 2.5 2.8 1.6 143 chr3R 22264300 intron SKIP + chr3R 22264372 intron SKIP + chr3R 22264443 intron SKIP + chr3R_6_22260001 chr3R_22260001 RAL-310 895 chr3R 22428583 22428609 chr3R 22428656 22428685 4 75 3.5 3.0 3.2 1.0 102 chr3R 22428583 intron CG13847 - chr3R 22428634 intron CG13847 - chr3R 22428685 intron CG13847 - chr3R_4_22425001 chr3R_22425001 RAL-310 896 chr3R 22450546 22450577 chr3R 22453185 22453217 NOF 11 2639 3.5 2.5 3.0 2.8 2671 chr3R 22450546 intron CG34376 + chr3R 22451882 intron CG34376 + chr3R 22453217 intron CG34376 + chr3R_11_22450001 chr3R_22450001 RAL-310 897 chr3R 22640368 22640387 chr3R 22640450 22640464 9 80 0.0 0.0 0.0 9.0 96 chr3R 22640368 intron wake + chr3R 22640416 intron wake + chr3R 22640464 intron wake + chr3R_9_22640001 chr3R_22640001 RAL-310 898 chr3R 22757459 22757469 chr3R 22757538 22757550 4 80 0.0 3.5 1.8 1.4 91 chr3R 22757459 intron,intron CG7029 +,Usp12-46 + chr3R 22757504 intron,intron CG7029 +,Usp12-46 + chr3R 22757550 intron,intron CG7029 +,Usp12-46 + chr3R_4_22755001 chr3R_22755001 RAL-310 899 chr3R 22769091 22769122 chr3R 22769167 22769197 7 74 2.0 1.5 1.8 2.5 106 chr3R 22769091 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769144 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769197 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R_7_22765001 chr3R_22765001 RAL-310 900 chr3R 22871442 22871457 chr3R 22871533 22871556 6 96 3.5 1.0 2.2 1.9 114 chr3R 22871442 intergenic not near genes chr3R 22871499 intergenic not near genes chr3R 22871556 intergenic not near genes chr3R_6_22870001 chr3R_22870001 RAL-310 901 chr3R 23064174 23064192 chr3R 23064282 23064287 5 105 4.0 4.0 4.0 1.0 113 chr3R 23064174 exon CG17111 - chr3R 23064230 intron CG17111 - chr3R 23064287 exon CG17111 - chr3R_5_23060001 chr3R_23060001 RAL-310 902 chr3R 23090419 23090436 chr3R 23090494 23090513 7 80 2.5 3.5 3.0 1.8 94 chr3R 23090419 intron CG13830 - chr3R 23090466 intron CG13830 - chr3R 23090513 intron CG13830 - chr3R_7_23090001 chr3R_23090001 RAL-310 903 chr3R 23091264 23091288 chr3R 23091347 23091372 4 84 1.5 1.0 1.2 1.8 108 chr3R 23091264 intron CG13830 - chr3R 23091318 intron CG13830 - chr3R 23091372 intron CG13830 - chr3R_4_23090001 chr3R_23090001 RAL-310 904 chr3R 23145162 23145195 chr3R 23145236 23145266 8 75 2.5 3.5 3.0 2.0 104 chr3R 23145162 intergenic not near genes chr3R 23145214 intergenic not near genes chr3R 23145266 intergenic not near genes chr3R_8_23145001 chr3R_23145001 RAL-310 905 chr3R 23558405 23558427 chr3R 23560186 23560208 Bari1 4 1781 0.5 2.0 1.2 1.8 1803 chr3R 23558405 intron beat-IV + chr3R 23559306 intron beat-IV + chr3R 23560208 intron beat-IV + chr3R_4_23555001 chr3R_23555001 RAL-310 906 chr3R 23570697 23570711 chr3R 23571044 23571056 4 346 2.5 1.0 1.8 1.4 359 chr3R 23570697 intron beat-IV + chr3R 23570876 intron beat-IV + chr3R 23571056 intron beat-IV + chr3R_4_23570001 chr3R_23570001 RAL-310 907 chr3R 23684694 23684720 chr3R 23685180 23685187 roo 7 479 5.0 7.0 6.0 1.0 493 chr3R 23684694 exon CG18754 + chr3R 23684940 intron CG18754 + chr3R 23685187 exon CG18754 + chr3R_7_23680001 chr3R_23680001 RAL-310 908 chr3R 23764124 23764144 chr3R 23764191 23764217 5 73 2.0 2.0 2.0 1.7 93 chr3R 23764124 5` UTR Lsd-1 + chr3R 23764170 5` UTR Lsd-1 + chr3R 23764217 5` UTR Lsd-1 + chr3R_5_23760001 chr3R_23760001 RAL-310 909 chr3R 23826751 23826782 chr3R 23826877 23826910 11 126 1.0 4.5 2.8 2.9 159 chr3R 23826751 intron CG34355 + chr3R 23826830 intron CG34355 + chr3R 23826910 intron CG34355 + chr3R_11_23825001 chr3R_23825001 RAL-310 910 chr3R 23835406 23835417 chr3R 23844556 23844567 roo 5 9150 2.0 0.5 1.2 2.3 9161 chr3R 23835406 intron CG34355 + chr3R 23839986 intron CG34355 + chr3R 23844567 intron CG34355 + chr3R_5_23835001 chr3R_23835001 RAL-310 911 chr3R 23944917 23944935 chr3R 23945002 23945020 5 83 2.5 1.0 1.8 1.8 103 chr3R 23944917 intron CG12268 - chr3R 23944968 intron CG12268 - chr3R 23945020 exon CG12268 - chr3R_5_23940001 chr3R_23940001 RAL-310 912 chr3R 24072100 24072112 chr3R 24072532 24072550 jockey 7 435 4.5 6.0 5.2 1.1 450 chr3R 24072100 intron 4EHP - chr3R 24072325 intron 4EHP - chr3R 24072550 intron 4EHP - chr3R_7_24070001 chr3R_24070001 RAL-310 913 chr3R 24207230 24207243 chr3R 24212306 24212318 flea 4 5075 8.0 4.0 6.0 0.6 5088 chr3R 24207230 intron twin - chr3R 24209774 intron twin - chr3R 24212318 intron twin - chr3R_4_24205001 chr3R_24205001 RAL-310 914 chr3R 24269626 24269644 chr3R 24269964 24269992 9 344 4.5 1.5 3.0 2.2 366 chr3R 24269626 intron jar - chr3R 24269809 intron jar - chr3R 24269992 intron jar - chr3R_9_24265001 chr3R_24265001 RAL-310 915 chr3R 21907534 21907536 chr3R 24389465 24389465 4 2481930 18.0 6.5 12.2 0.3 2481931 chr3R 21907534 intergenic CG6678 + chr3R 23148500 intergenic not near genes chr3R 24389465 intron CG5768 - chr3R_4_23145001 chr3R_23145001 RAL-310 916 chr3R 24426294 24426307 chr3R 24426550 24426563 5 256 3.0 3.5 3.2 1.2 269 chr3R 24426294 intron nAChRalpha1 - chr3R 24426428 intron nAChRalpha1 - chr3R 24426563 intron nAChRalpha1 - chr3R_5_24425001 chr3R_24425001 RAL-310 917 chr3R 24433352 24433374 chr3R 24433497 24433519 11 145 2.0 3.5 2.8 2.9 167 chr3R 24433352 intron nAChRalpha1 - chr3R 24433436 intron nAChRalpha1 - chr3R 24433519 intron nAChRalpha1 - chr3R_11_24430001 chr3R_24430001 RAL-310 918 chr3R 24730091 24730120 chr3R 24732468 24732490 Doc 8 2374 2.5 0.5 1.5 3.2 2399 chr3R 24730091 intron tok + chr3R 24731290 intron tok + chr3R 24732490 intron tok + chr3R_8_24730001 chr3R_24730001 RAL-310 919 chr3R 24746257 24746258 chr3R 24751609 24751637 6 5366 19.5 25.5 22.5 0.3 5380 chr3R 24746257 exon tok + chr3R 24748947 3` UTR tok + chr3R 24751637 exon tld + chr3R_6_24745001 chr3R_24745001 RAL-310 920 chr3R 24785079 24785110 chr3R 24785154 24785162 7 71 1.0 0.5 0.8 3.9 83 chr3R 24785079 3` UTR CG5805 - chr3R 24785120 3` UTR CG5805 - chr3R 24785162 3` UTR CG5805 - chr3R_7_24785001 chr3R_24785001 RAL-310 921 chr3R 24789984 24789990 chr3R 24790128 24790135 4 145 3.0 3.5 3.2 1.0 151 chr3R 24789984 intron,5` UTR Ets96B +,CG13634 - chr3R 24790060 intron,5` UTR Ets96B +,CG13634 - chr3R 24790135 intron,5` UTR Ets96B +,CG13634 - chr3R_4_24790001 chr3R_24790001 RAL-310 922 chr3R 24842115 24842135 chr3R 24842201 24842221 4 86 2.5 5.0 3.8 0.8 106 chr3R 24842115 5` UTR Esp + chr3R 24842168 5` UTR Esp + chr3R 24842221 5` UTR Esp + chr3R_4_24840001 chr3R_24840001 RAL-310 923 chr3R 24845990 24846025 chr3R 24846080 24846115 5 84 2.0 4.5 3.2 1.2 125 chr3R 24845990 intron Esp + chr3R 24846052 intron Esp + chr3R 24846115 intron Esp + chr3R_5_24845001 chr3R_24845001 RAL-310 924 chr3R 24974915 24974923 chr3R 24974992 24975002 5 79 2.5 2.0 2.2 1.6 87 chr3R 24974915 intergenic not near genes chr3R 24974958 intergenic not near genes chr3R 24975002 intergenic not near genes chr3R_5_24970001 chr3R_24970001 RAL-310 925 chr3R 25004903 25004916 chr3R 25004986 25004999 5 83 0.0 4.0 2.0 1.7 96 chr3R 25004903 intron tnc + chr3R 25004951 intron tnc + chr3R 25004999 intron tnc + chr3R_5_25000001 chr3R_25000001 RAL-310 926 chr3R 25027537 25027564 chr3R 25027750 25027777 5 213 2.0 2.5 2.2 1.6 240 chr3R 25027537 intron Hr96 + chr3R 25027657 intron Hr96 + chr3R 25027777 intron Hr96 + chr3R_5_25025001 chr3R_25025001 RAL-310 927 chr3R 25166380 25166395 chr3R 25166456 25166471 4 76 0.0 2.0 1.0 2.0 91 chr3R 25166380 intergenic not near genes chr3R 25166426 intergenic not near genes chr3R 25166471 intergenic not near genes chr3R_4_25165001 chr3R_25165001 RAL-310 928 chr3R 25302142 25302151 chr3R 25302358 25302367 4 216 10.0 4.0 7.0 0.5 225 chr3R 25302142 exon CG13659 + chr3R 25302254 exon CG13659 + chr3R 25302367 intergenic CG13659 +,CG31370 + chr3R_4_25300001 chr3R_25300001 RAL-310 929 chr3R 25396979 25397004 chr3R 25397065 25397069 4 82 2.0 5.0 3.5 0.9 90 chr3R 25396979 exon Fur1 - chr3R 25397024 exon Fur1 - chr3R 25397069 exon Fur1 - chr3R_4_25395001 chr3R_25395001 RAL-310 930 chr3R 25588071 25588102 chr3R 25588148 25588180 8 75 3.0 1.5 2.2 2.5 109 chr3R 25588071 intron msi + chr3R 25588126 intron msi + chr3R 25588180 intron msi + chr3R_8_25585001 chr3R_25585001 RAL-310 931 chr3R 25629846 25629852 chr3R 25629901 25629933 5 74 3.0 0.5 1.8 1.8 87 chr3R 25629846 intergenic not near genes chr3R 25629890 intergenic not near genes chr3R 25629933 intergenic not near genes chr3R_5_25625001 chr3R_25625001 RAL-310 932 chr3R 25661271 25661304 chr3R 25661348 25661355 7 68 1.5 0.5 1.0 3.5 84 chr3R 25661271 5` UTR Tnks - chr3R 25661313 intergenic Tnks -,CR45208 -,RASSF8 + chr3R 25661355 intergenic Tnks -,CR45208 -,RASSF8 + chr3R_7_25660001 chr3R_25660001 RAL-310 933 chr3R 25832694 25832721 chr3R 25841876 25841901 roo 9 9181 5.0 4.0 4.5 1.6 9207 chr3R 25832694 exon alpha4GT2 + chr3R 25837298 intron alpha4GT2 + chr3R 25841901 exon alpha4GT2 + chr3R_9_25835001 chr3R_25835001 RAL-310 934 chr3R 26066363 26066391 chr3R 26066441 26066476 8 83 0.5 2.5 1.5 3.2 113 chr3R 26066363 intergenic not near genes chr3R 26066420 intergenic not near genes chr3R 26066476 intergenic not near genes chr3R_8_26065001 chr3R_26065001 RAL-310 935 chr3R 26131671 26131694 chr3R 26131777 26131791 5 105 0.5 2.5 1.5 2.0 120 chr3R 26131671 intergenic not near genes chr3R 26131731 intergenic not near genes chr3R 26131791 intergenic not near genes chr3R_5_26130001 chr3R_26130001 RAL-310 936 chr3R 26182805 26182818 chr3R 26183238 26183250 5 433 5.5 2.5 4.0 1.0 445 chr3R 26182805 intron CG31323 + chr3R 26183028 intron CG31323 + chr3R 26183250 intron CG31323 + chr3R_5_26180001 chr3R_26180001 RAL-310 937 chr3R 26197890 26197896 chr3R 26197969 26197995 5 93 3.0 7.0 5.0 0.8 105 chr3R 26197890 intron CR44320 + chr3R 26197942 intron CR44320 + chr3R 26197995 intron CR44320 + chr3R_5_26195001 chr3R_26195001 RAL-310 938 chr3R 26241252 26241280 chr3R 26241342 26241370 6 90 0.5 1.5 1.0 3.0 118 chr3R 26241252 intron CR42745 + chr3R 26241311 intron CR42745 + chr3R 26241370 intron CR42745 + chr3R_6_26240001 chr3R_26240001 RAL-310 939 chr3R 26387318 26387348 chr3R 26387395 26387425 8 75 4.0 4.5 4.2 1.5 107 chr3R 26387318 intergenic not near genes chr3R 26387372 intergenic not near genes chr3R 26387425 intergenic not near genes chr3R_8_26385001 chr3R_26385001 RAL-310 940 chr3R 26420407 26420429 chr3R 26420633 26420655 8 226 1.0 3.0 2.0 2.7 248 chr3R 26420407 intergenic not near genes chr3R 26420531 intergenic not near genes chr3R 26420655 intergenic not near genes chr3R_8_26420001 chr3R_26420001 RAL-310 941 chr3R 26444363 26444370 chr3R 26444433 26444447 4 76 1.5 2.5 2.0 1.3 84 chr3R 26444363 intron tx + chr3R 26444405 intron tx + chr3R 26444447 intron tx + chr3R_4_26440001 chr3R_26440001 RAL-310 942 chr3R 26510507 26510530 chr3R 26519564 26519587 roo 7 9060 1.0 2.5 1.8 2.5 9080 chr3R 26510507 intron plum - chr3R 26515047 intron plum - chr3R 26519587 intron,5` UTR plum -,CR45226 + chr3R_7_26515001 chr3R_26515001 RAL-310 943 chr3R 26558334 26558356 chr3R 26565646 26565668 Stalker4 5 7311 2.0 7.0 4.5 0.9 7334 chr3R 26558334 intron scrib + chr3R 26562001 intron scrib + chr3R 26565668 intron scrib + chr3R_5_26560001 chr3R_26560001 RAL-310 944 chr3R 26641636 26641663 chr3R 26641723 26641749 7 83 3.0 0.5 1.8 2.5 113 chr3R 26641636 intergenic not near genes chr3R 26641692 intergenic not near genes chr3R 26641749 intergenic not near genes chr3R_7_26640001 chr3R_26640001 RAL-310 945 chr3R 26738926 26738953 chr3R 26739005 26739032 6 78 5.0 3.0 4.0 1.2 106 chr3R 26738926 intergenic CG14247 + chr3R 26738979 intergenic CG14247 + chr3R 26739032 intergenic CG14247 + chr3R_6_26735001 chr3R_26735001 RAL-310 946 chr3R 26770243 26770265 chr3R 26770320 26770342 4 76 3.5 1.5 2.5 1.1 99 chr3R 26770243 intergenic CR45563 + chr3R 26770292 intergenic CR45563 + chr3R 26770342 intergenic not near genes chr3R_4_26770001 chr3R_26770001 RAL-310 947 chr3R 27007404 27007432 chr3R 27016538 27016567 roo 5 9134 0.5 1.5 1.0 2.5 9163 chr3R 27007404 intron RYa-R + chr3R 27011986 intron RYa-R + chr3R 27016567 intron RYa-R + chr3R_5_27010001 chr3R_27010001 RAL-310 948 chr3R 27028732 27028751 chr3R 27028811 27028829 5 79 1.0 2.5 1.8 1.8 97 chr3R 27028732 intron RYa-R + chr3R 27028780 intron RYa-R + chr3R 27028829 intron RYa-R + chr3R_5_27025001 chr3R_27025001 RAL-310 949 chr3R 27140521 27140537 chr3R 27148131 27148145 412 7 7609 6.5 3.5 5.0 1.2 7624 chr3R 27140521 intron CG6051 - chr3R 27144333 intron CG6051 - chr3R 27148145 intron CG6051 - chr3R_7_27140001 chr3R_27140001 RAL-310 950 chr3R 27140539 27140546 chr3R 27148129 27148156 412 4 7604 4.5 3.5 4.0 0.8 7617 chr3R 27140539 intron CG6051 - chr3R 27144348 intron CG6051 - chr3R 27148156 intron CG6051 - chr3R_4_27140001 chr3R_27140001 RAL-310 951 chr3R 27292282 27292302 chr3R 27292394 27292396 4 106 2.5 2.5 2.5 1.1 114 chr3R 27292282 intergenic CG3348 - chr3R 27292339 intergenic CG3348 - chr3R 27292396 intergenic CG3348 - chr3R_4_27290001 chr3R_27290001 RAL-310 952 chr3R 27496592 27496627 chr3R 27496697 27496731 6 105 1.0 1.5 1.2 2.7 139 chr3R 27496592 intergenic not near genes chr3R 27496662 intergenic not near genes chr3R 27496731 intergenic not near genes chr3R_6_27495001 chr3R_27495001 RAL-310 953 chr3R 27511265 27511282 chr3R 27511336 27511369 7 84 1.5 2.5 2.0 2.3 104 chr3R 27511265 intergenic not near genes chr3R 27511317 intergenic not near genes chr3R 27511369 intergenic not near genes chr3R_7_27510001 chr3R_27510001 RAL-310 954 chr3R 27648610 27648870 chr3R 27648677 27648945 8 76 2.5 1.0 1.8 2.9 335 chr3R 27648610 intron tau - chr3R 27648778 intron tau - chr3R 27648945 intron tau - chr3R_8_27645001 chr3R_27645001 RAL-310 955 chr3R 27706775 27706806 chr3R 27706852 27706878 4 73 0.5 0.5 0.5 2.7 103 chr3R 27706775 intergenic CG12428 -,CG12877 + chr3R 27706826 intergenic CG12428 -,CG12877 + chr3R 27706878 intergenic CG12428 -,CG12877 + chr3R_4_27705001 chr3R_27705001 RAL-310 956 chr3R 27718589 27718598 chr3R 27718668 27718676 4 76 2.5 5.0 3.8 0.8 87 chr3R 27718589 intergenic not near genes chr3R 27718632 intergenic not near genes chr3R 27718676 intergenic not near genes chr3R_4_27715001 chr3R_27715001 RAL-310 957 chr3R 27725570 27725588 chr3R 27731012 27731030 I-element 5 5442 6.5 2.0 4.2 1.0 5460 chr3R 27725570 intergenic not near genes chr3R 27728300 intergenic not near genes chr3R 27731030 intergenic not near genes chr3R_5_27725001 chr3R_27725001 RAL-310 958 chr3R 27856759 27856788 chr3R 27858240 27858271 hopper2 9 1483 2.5 2.0 2.2 2.8 1512 chr3R 27856759 intron CG34353 - chr3R 27857515 intron CG34353 - chr3R 27858271 intron CG34353 - chr3R_9_27855001 chr3R_27855001 RAL-310 959 chr3R 27862953 27862978 chr3R 27868258 27868283 Transpac 4 5305 3.0 0.5 1.8 1.4 5330 chr3R 27862953 intron CG34353 - chr3R 27865618 intron CG34353 - chr3R 27868283 intron CG34353 - chr3R_4_27865001 chr3R_27865001 RAL-310 960 chr3R 27875703 27875733 chr3R 27882753 27882788 297 6 7054 3.0 4.0 3.5 1.3 7085 chr3R 27875703 intron CG34353 - chr3R 27879246 intron CG34353 - chr3R 27882788 intron CG34353 - chr3R_6_27875001 chr3R_27875001 RAL-310 961 chr3R 28032633 28032663 chr3R 28032762 28032792 7 129 3.0 1.5 2.2 2.2 159 chr3R 28032633 intron CG34362 + chr3R 28032712 intron CG34362 + chr3R 28032792 intron CG34362 + chr3R_7_28030001 chr3R_28030001 RAL-310 962 chr3R 28068494 28068526 chr3R 28073936 28073963 I-element 8 5441 4.0 2.0 3.0 2.0 5469 chr3R 28068494 intron CG34362 + chr3R 28071228 intron CG34362 + chr3R 28073963 intron CG34362 + chr3R_8_28070001 chr3R_28070001 RAL-310 963 chr3R 28132494 28132506 chr3R 28132576 28132588 6 81 3.5 3.0 3.2 1.4 94 chr3R 28132494 intergenic not near genes chr3R 28132541 intergenic not near genes chr3R 28132588 intergenic not near genes chr3R_6_28130001 chr3R_28130001 RAL-310 964 chr3R 28132507 28132523 chr3R 28132575 28132578 5 64 2.0 3.0 2.5 1.4 71 chr3R 28132507 intergenic not near genes chr3R 28132542 intergenic not near genes chr3R 28132578 intergenic not near genes chr3R_5_28130001 chr3R_28130001 RAL-310 965 chr3R 28215825 28215848 chr3R 28215893 28215911 9 71 2.0 4.0 3.0 2.2 86 chr3R 28215825 intron CG34354 + chr3R 28215868 intron CG34354 + chr3R 28215911 intron CG34354 + chr3R_9_28215001 chr3R_28215001 RAL-310 966 chr3R 28253357 28253369 chr3R 28255850 28255879 jockey 5 2506 3.5 4.5 4.0 1.0 2522 chr3R 28253357 intergenic not near genes chr3R 28254618 intergenic not near genes chr3R 28255879 intergenic not near genes chr3R_5_28250001 chr3R_28250001 RAL-310 967 chr3R 28282986 28283019 chr3R 28283615 28283648 5 628 0.5 1.5 1.0 2.5 662 chr3R 28282986 exon CG34436 + chr3R 28283317 exon CG34436 + chr3R 28283648 intergenic CG34437 +,CG34436 + chr3R_5_28280001 chr3R_28280001 RAL-310 968 chr3R 28393704 28393723 chr3R 28393804 28393823 4 100 2.0 4.0 3.0 1.0 119 chr3R 28393704 intergenic not near genes chr3R 28393764 intergenic not near genes chr3R 28393823 intergenic not near genes chr3R_4_28390001 chr3R_28390001 RAL-310 969 chr3R 28422303 28422335 chr3R 28422389 28422414 5 81 3.0 0.0 1.5 2.0 111 chr3R 28422303 intron beat-VI + chr3R 28422358 intron beat-VI + chr3R 28422414 intron beat-VI + chr3R_5_28420001 chr3R_28420001 RAL-310 970 chr3R 28425186 28425218 chr3R 28425265 28425296 5 75 2.5 2.0 2.2 1.6 110 chr3R 28425186 intron beat-VI + chr3R 28425241 intron beat-VI + chr3R 28425296 intron beat-VI + chr3R_5_28425001 chr3R_28425001 RAL-310 971 chr3R 28540511 28540521 chr3R 28540585 28540596 4 78 6.5 2.0 4.2 0.8 85 chr3R 28540511 intergenic Ppn - chr3R 28540554 intergenic Ppn - chr3R 28540596 intergenic Ppn - chr3R_4_28540001 chr3R_28540001 RAL-310 972 chr3R 28678668 28678671 chr3R 28679101 28679122 4 443 3.5 2.5 3.0 1.0 454 chr3R 28678668 intron CG9990 + chr3R 28678895 intron CG9990 + chr3R 28679122 intron CG9990 + chr3R_4_28675001 chr3R_28675001 RAL-310 973 chr3R 28702932 28702961 chr3R 28703016 28703024 19 80 1.5 2.0 1.8 6.8 92 chr3R 28702932 intron htt + chr3R 28702978 intron htt + chr3R 28703024 intron htt + chr3R_19_28700001 chr3R_28700001 RAL-310 974 chr3R 28792871 28792900 chr3R 28797966 28797995 jockey 8 5092 2.0 1.0 1.5 3.2 5124 chr3R 28792871 intergenic not near genes chr3R 28795433 intergenic not near genes chr3R 28797995 intergenic not near genes chr3R_8_28795001 chr3R_28795001 RAL-310 975 chr3R 21907534 21907536 chr3R 28831799 28831802 68 6924266 18.0 13.0 15.5 4.1 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_68_25365001 chr3R_25365001 RAL-310 976 chr3R 28989911 28989934 chr3R 28990086 28990107 6 175 1.5 4.5 3.0 1.5 196 chr3R 28989911 intergenic not near genes chr3R 28990009 intergenic not near genes chr3R 28990107 intergenic not near genes chr3R_6_28990001 chr3R_28990001 RAL-310 977 chr3R 28998987 28999007 chr3R 28999079 28999099 7 92 3.5 1.5 2.5 2.0 112 chr3R 28998987 intron wat - chr3R 28999043 intron wat - chr3R 28999099 intron wat - chr3R_7_28995001 chr3R_28995001 RAL-310 978 chr3R 21907534 21907535 chr3R 29013340 29013340 7 7105806 18.5 16.0 17.2 0.4 7105806 chr3R 21907534 intergenic CG6678 + chr3R 25460437 intron Fur1 - chr3R 29013340 intron wat - chr3R_7_25460001 chr3R_25460001 RAL-310 979 chr3R 29032751 29032778 chr3R 29032826 29032834 5 67 1.5 1.0 1.2 2.3 83 chr3R 29032751 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R 29032792 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R 29032834 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R_5_29030001 chr3R_29030001 RAL-310 980 chr3R 29213071 29213076 chr3R 29213145 29213159 5 81 5.5 2.5 4.0 1.0 88 chr3R 29213071 intergenic not near genes chr3R 29213115 intergenic not near genes chr3R 29213159 intergenic not near genes chr3R_5_29210001 chr3R_29210001 RAL-310 981 chr3R 29256278 29256300 chr3R 29256351 29256371 7 75 1.5 2.0 1.8 2.5 93 chr3R 29256278 intergenic CG45544 +,stg - chr3R 29256324 intergenic CG45544 + chr3R 29256371 intergenic CG45544 + chr3R_7_29255001 chr3R_29255001 RAL-310 982 chr3R 29322475 29322494 chr3R 29322576 29322595 5 99 3.0 2.5 2.8 1.3 120 chr3R 29322475 intergenic not near genes chr3R 29322535 intergenic not near genes chr3R 29322595 intergenic not near genes chr3R_5_29320001 chr3R_29320001 RAL-310 983 chr3R 29406617 29406649 chr3R 29407901 29407926 jockey 6 1279 1.0 2.5 1.8 2.1 1309 chr3R 29406617 intron Ptp99A + chr3R 29407272 intron Ptp99A + chr3R 29407926 intron Ptp99A + chr3R_6_29405001 chr3R_29405001 RAL-310 984 chr3R 29472008 29472038 chr3R 29472101 29472131 6 90 2.5 1.5 2.0 2.0 123 chr3R 29472008 intron Ptp99A + chr3R 29472070 intron Ptp99A + chr3R 29472131 intron Ptp99A + chr3R_6_29470001 chr3R_29470001 RAL-310 985 chr3R 29606945 29606965 chr3R 29607021 29607043 10 77 0.5 3.0 1.8 3.6 98 chr3R 29606945 intron alph + chr3R 29606994 intron alph + chr3R 29607043 intron alph + chr3R_10_29605001 chr3R_29605001 RAL-310 986 chr3R 29645837 29645851 chr3R 29645918 29645930 4 80 5.0 4.0 4.5 0.7 93 chr3R 29645837 intron Dop1R2 - chr3R 29645884 intron Dop1R2 - chr3R 29645930 intron Dop1R2 - chr3R_4_29645001 chr3R_29645001 RAL-310 987 chr3R 29708556 29708587 chr3R 29708634 29708656 6 72 2.0 1.5 1.8 2.1 100 chr3R 29708556 intergenic not near genes chr3R 29708606 intergenic not near genes chr3R 29708656 intergenic not near genes chr3R_6_29705001 chr3R_29705001 RAL-310 988 chr3R 29843881 29843889 chr3R 29843958 29843969 4 78 8.5 11.5 10.0 0.4 88 chr3R 29843881 intron Cad99C + chr3R 29843925 intron Cad99C + chr3R 29843969 intron Cad99C + chr3R_4_29840001 chr3R_29840001 RAL-310 989 chr3R 29880603 29880615 chr3R 29880667 29880700 5 77 1.5 2.5 2.0 1.7 97 chr3R 29880603 intron CG31038 + chr3R 29880652 intron CG31038 + chr3R 29880700 intron CG31038 + chr3R_5_29880001 chr3R_29880001 RAL-310 990 chr3R 29882023 29882049 chr3R 29891180 29891206 roo 6 9156 4.0 3.5 3.8 1.2 9183 chr3R 29882023 intron CG31038 + chr3R 29886614 intron CG31038 + chr3R 29891206 intron CG31038 + chr3R_6_29885001 chr3R_29885001 RAL-310 991 chr3R 29986070 29986094 chr3R 29986141 29986175 10 76 1.0 1.5 1.2 4.5 105 chr3R 29986070 exon CG7896 + chr3R 29986122 intron CG7896 + chr3R 29986175 intron CG7896 + chr3R_10_29985001 chr3R_29985001 RAL-310 992 chr3R 30013678 30013704 chr3R 30013758 30013787 4 80 1.0 2.0 1.5 1.6 109 chr3R 30013678 intron CG7920 - chr3R 30013732 intron CG7920 - chr3R 30013787 intron CG7920 - chr3R_4_30010001 chr3R_30010001 RAL-310 993 chr3R 30084856 30084876 chr3R 30086314 30086336 hobo 5 1462 5.5 3.5 4.5 0.9 1480 chr3R 30084856 intron sima + chr3R 30085596 intron sima + chr3R 30086336 intron sima + chr3R_5_30085001 chr3R_30085001 RAL-310 994 chr3R 30099067 30099097 chr3R 30099146 30099175 5 79 1.0 2.0 1.5 2.0 108 chr3R 30099067 intron sima + chr3R 30099121 intron sima + chr3R 30099175 intron sima + chr3R_5_30095001 chr3R_30095001 RAL-310 995 chr3R 30170758 30170782 chr3R 30170844 30170869 9 87 3.5 3.0 3.2 2.1 111 chr3R 30170758 intron CG31028 - chr3R 30170814 intron CG31028 - chr3R 30170869 intron CG31028 - chr3R_9_30170001 chr3R_30170001 RAL-310 996 chr3R 30177745 30177770 chr3R 30177862 30177887 4 112 1.0 2.5 1.8 1.4 142 chr3R 30177745 intergenic CG1983 -,CG15530 + chr3R 30177816 intergenic CG15530 +,CG1983 - chr3R 30177887 5` UTR CG15530 + chr3R_4_30175001 chr3R_30175001 RAL-310 997 chr3R 30267995 30267998 chr3R 30268081 30268084 4 86 2.0 7.0 4.5 0.7 89 chr3R 30267995 intergenic not near genes chr3R 30268040 intergenic not near genes chr3R 30268084 intergenic not near genes chr3R_4_30265001 chr3R_30265001 RAL-310 998 chr3R 30272532 30272542 chr3R 30272619 30272631 7 88 1.0 2.0 1.5 2.8 99 chr3R 30272532 intergenic not near genes chr3R 30272582 intergenic not near genes chr3R 30272631 intergenic not near genes chr3R_7_30270001 chr3R_30270001 RAL-310 999 chr3R 30332029 30332049 chr3R 30332108 30332128 13 78 4.5 2.0 3.2 3.1 99 chr3R 30332029 intron hdc + chr3R 30332078 intron hdc + chr3R 30332128 intron hdc + chr3R_13_30330001 chr3R_30330001 RAL-310 1000 chr3R 30396228 30396239 chr3R 30404482 30404503 roo 5 8262 2.0 3.5 2.8 1.3 8275 chr3R 30396228 intergenic not near genes chr3R 30400366 intergenic not near genes chr3R 30404503 5` UTR CR45570 + chr3R_5_30400001 chr3R_30400001 RAL-310 1001 chr3R 30458032 30458047 chr3R 30458099 30458122 4 75 1.0 2.0 1.5 1.6 90 chr3R 30458032 intron CG2224 - chr3R 30458077 intron CG2224 - chr3R 30458122 intron CG2224 - chr3R_4_30455001 chr3R_30455001 RAL-310 1002 chr3R 30480485 30480501 chr3R 30482953 30482962 jockey 7 2466 2.0 6.5 4.2 1.3 2477 chr3R 30480485 intron PH4alphaEFB + chr3R 30481724 intron PH4alphaEFB + chr3R 30482962 intron PH4alphaEFB + chr3R_7_30480001 chr3R_30480001 RAL-310 1003 chr3R 30480507 30480511 chr3R 30482952 30482979 jockey 4 2460 0.5 6.5 3.5 0.9 2472 chr3R 30480507 intron PH4alphaEFB + chr3R 30481743 intron PH4alphaEFB + chr3R 30482979 intron PH4alphaEFB + chr3R_4_30480001 chr3R_30480001 RAL-310 1004 chr3R 30564327 30564349 chr3R 30564410 30564432 4 83 1.0 6.0 3.5 0.9 105 chr3R 30564327 intron tmod + chr3R 30564380 intron tmod + chr3R 30564432 intron tmod + chr3R_4_30560001 chr3R_30560001 RAL-310 1005 chr3R 30627604 30627638 chr3R 30627684 30627718 12 71 3.0 4.0 3.5 2.7 114 chr3R 30627604 3` UTR CG2267 - chr3R 30627661 exon CG2267 - chr3R 30627718 exon CG2267 - chr3R_12_30625001 chr3R_30625001 RAL-310 1006 chr3R 30679518 30679551 chr3R 30686987 30687019 blood 7 7469 4.0 6.5 5.2 1.1 7501 chr3R 30679518 intergenic not near genes chr3R 30683268 intergenic not near genes chr3R 30687019 intergenic not near genes chr3R_7_30680001 chr3R_30680001 RAL-310 1007 chr3R 30690161 30690184 chr3R 30690245 30690263 11 83 5.0 3.5 4.2 2.1 102 chr3R 30690161 intergenic Spn100A + chr3R 30690212 intergenic Spn100A + chr3R 30690263 intergenic Spn100A + chr3R_11_30690001 chr3R_30690001 RAL-310 1008 chr3R 30938415 30938437 chr3R 30938488 30938493 6 72 0.0 2.5 1.2 2.7 78 chr3R 30938415 intergenic not near genes chr3R 30938454 intergenic not near genes chr3R 30938493 intergenic not near genes chr3R_6_30935001 chr3R_30935001 RAL-310 1009 chr3R 31042120 31042131 chr3R 31042202 31042218 5 86 2.0 1.5 1.8 1.8 98 chr3R 31042120 intron CanA1 + chr3R 31042169 intron CanA1 + chr3R 31042218 intron CanA1 + chr3R_5_31040001 chr3R_31040001 RAL-310 1010 chr3R 31069652 31069664 chr3R 31069747 31069754 4 94 4.0 1.0 2.5 1.1 102 chr3R 31069652 intron Sox100B + chr3R 31069703 intron Sox100B + chr3R 31069754 intron Sox100B + chr3R_4_31065001 chr3R_31065001 RAL-310 1011 chr3R 31087102 31087132 chr3R 31087614 31087642 6 507 0.5 1.0 0.8 3.3 540 chr3R 31087102 intergenic not near genes chr3R 31087372 intergenic not near genes chr3R 31087642 intergenic not near genes chr3R_6_31085001 chr3R_31085001 RAL-310 1012 chr3R 31161414 31161439 chr3R 31161925 31161950 4 512 1.0 0.5 0.8 2.2 536 chr3R 31161414 intron,intron Gycbeta100B +,stops - chr3R 31161682 intron,intron Gycbeta100B +,stops - chr3R 31161950 intron,intron Gycbeta100B +,stops - chr3R_4_31160001 chr3R_31160001 RAL-310 1013 chr3R 31188024 31188048 chr3R 31188126 31188150 7 100 2.0 2.5 2.2 2.2 126 chr3R 31188024 intron mesh - chr3R 31188087 intron mesh - chr3R 31188150 intron mesh - chr3R_7_31185001 chr3R_31185001 RAL-310 1014 chr3R 31270796 31270807 chr3R 31270903 31270907 4 105 3.5 3.5 3.5 0.9 111 chr3R 31270796 intergenic not near genes chr3R 31270852 intergenic not near genes chr3R 31270907 intergenic not near genes chr3R_4_31270001 chr3R_31270001 RAL-310 1015 chr3R 31413099 31413110 chr3R 31418299 31418310 copia 4 5200 4.5 2.5 3.5 0.9 5211 chr3R 31413099 intron Gprk2 + chr3R 31415704 intron Gprk2 + chr3R 31418310 intron Gprk2 + chr3R_4_31415001 chr3R_31415001 RAL-310 1016 chr3R 31426878 31426908 chr3R 31426970 31427000 8 92 2.5 0.5 1.5 3.2 122 chr3R 31426878 intron Gprk2 + chr3R 31426939 intron Gprk2 + chr3R 31427000 intron Gprk2 + chr3R_8_31425001 chr3R_31425001 RAL-310 1017 chr3R 31435361 31435384 chr3R 31435513 31435536 4 152 1.0 2.5 1.8 1.4 175 chr3R 31435361 intron Gprk2 + chr3R 31435448 intron Gprk2 + chr3R 31435536 intron Gprk2 + chr3R_4_31435001 chr3R_31435001 RAL-310 1018 chr3R 31530820 31530848 chr3R 31531143 31531167 4 320 3.0 4.0 3.5 0.9 347 chr3R 31530820 intergenic not near genes chr3R 31530994 intergenic not near genes chr3R 31531167 intergenic not near genes chr3R_4_31530001 chr3R_31530001 RAL-310 1019 chr3R 31610126 31610146 chr3R 31610212 31610219 4 82 1.0 2.5 1.8 1.4 93 chr3R 31610126 intron CycG - chr3R 31610172 intron CycG - chr3R 31610219 intron CycG - chr3R_4_31610001 chr3R_31610001 RAL-310 1020 chr3R 31627029 31627056 chr3R 31627537 31627562 9 504 2.0 2.0 2.0 3.0 533 chr3R 31627029 intron kek6 + chr3R 31627296 intron kek6 + chr3R 31627562 intron kek6 + chr3R_9_31625001 chr3R_31625001 RAL-310 1021 chr3R 31691531 31691562 chr3R 31696297 31696328 Doc 8 4761 6.0 5.0 5.5 1.2 4797 chr3R 31691531 intergenic not near genes chr3R 31693930 intergenic not near genes chr3R 31696328 intergenic not near genes chr3R_8_31690001 chr3R_31690001 RAL-310 1022 chr3R 31961342 31961363 chr3R 31961425 31961440 4 81 4.5 5.0 4.8 0.7 98 chr3R 31961342 intron heph - chr3R 31961391 intron heph - chr3R 31961440 intron heph - chr3R_4_31960001 chr3R_31960001 RAL-310 1023 chr3R 31962079 31962095 chr3R 31962385 31962401 6 304 2.5 4.0 3.2 1.4 322 chr3R 31962079 intron heph - chr3R 31962240 intron heph - chr3R 31962401 intron heph - chr3R_6_31960001 chr3R_31960001 RAL-310 1024 chr3R 31975794 31975829 chr3R 31975882 31975912 7 82 0.5 0.5 0.5 4.7 118 chr3R 31975794 intron heph - chr3R 31975853 intron heph - chr3R 31975912 intron heph - chr3R_7_31975001 chr3R_31975001 RAL-310 1025 chr3R 31976541 31976564 chr3R 31976822 31976824 4 275 0.5 1.0 0.8 2.2 283 chr3R 31976541 intron heph - chr3R 31976682 intron heph - chr3R 31976824 intron heph - chr3R_4_31975001 chr3R_31975001 RAL-310 1026 chr3R 31997995 31998022 chr3R 32005460 32005492 blood 4 7468 1.5 1.5 1.5 1.6 7497 chr3R 31997995 intron heph - chr3R 32001744 intron heph - chr3R 32005492 intron heph - chr3R_4_32000001 chr3R_32000001 RAL-310 1027 chr4 76492 76513 chr4 81935 81956 I-element 4 5442 1.5 0.5 1.0 2.0 5464 chr4 76492 intron pan + chr4 79224 intron pan + chr4 81956 intron pan + chr4_4_75001 chr4_75001 RAL-310 1028 chr4 662187 662203 chr4 662830 662848 INE-1 4 644 0.5 0.0 0.2 3.3 661 chr4 662187 intron gw - chr4 662518 intron gw - chr4 662848 5` UTR gw - chr4_4_660001 chr4_660001 RAL-310 1029 chr4 671606 671637 chr4 680189 680215 Tirant 8 8582 2.5 5.0 3.8 1.7 8609 chr4 671606 intron CG11360 + chr4 675910 intron CG11360 + chr4 680215 intron CG11360 + chr4_8_675001 chr4_675001 RAL-310 1030 chrX 364432 364451 chrX 364778 364788 5 343 0.0 0.5 0.2 4.2 356 chrX 364432 intron,intron CG32816 -,yar + chrX 364610 intron,intron CG32816 -,yar + chrX 364788 intron,intron CG32816 -,yar + chrX_5_360001 chrX_360001 RAL-310 1031 chrX 367037 367069 chrX 367134 367166 6 96 1.5 3.5 2.5 1.7 129 chrX 367037 intron,5` UTR CG32816 -,yar + chrX 367102 intron CG32816 - chrX 367166 intron CG32816 - chrX_6_365001 chrX_365001 RAL-310 1032 chrX 443496 443527 chrX 443578 443593 9 80 1.0 3.5 2.2 2.8 97 chrX 443496 intron CG32816 - chrX 443544 intron CG32816 - chrX 443593 intron CG32816 - chrX_9_440001 chrX_440001 RAL-310 1033 chrX 670264 670295 chrX 670344 670370 4 76 2.0 0.0 1.0 2.0 106 chrX 670264 intergenic not near genes chrX 670317 intergenic not near genes chrX 670370 intergenic not near genes chrX_4_670001 chrX_670001 RAL-310 1034 chrX 680847 680871 chrX 680928 680939 8 80 2.5 6.5 4.5 1.5 92 chrX 680847 intergenic not near genes chrX 680893 intergenic not near genes chrX 680939 intergenic not near genes chrX_8_680001 chrX_680001 RAL-310 1035 chrX 806791 806813 chrX 806879 806909 6 92 0.0 3.0 1.5 2.4 118 chrX 806791 intron Sec22 + chrX 806850 intron Sec22 + chrX 806909 intron Sec22 + chrX_6_805001 chrX_805001 RAL-310 1036 chrX 826380 826414 chrX 826541 826555 6 157 3.0 1.5 2.2 1.9 175 chrX 826380 intron CG43867 - chrX 826468 intron CG43867 - chrX 826555 intron CG43867 - chrX_6_825001 chrX_825001 RAL-310 1037 chrX 827608 827622 chrX 835400 835414 roo 6 7792 4.5 0.0 2.2 1.9 7806 chrX 827608 intron CG43867 - chrX 831511 intron CG43867 - chrX 835414 intron CG43867 - chrX_6_830001 chrX_830001 RAL-310 1038 chrX 906704 906718 chrX 908493 908506 S-element 4 1789 2.5 4.5 3.5 0.9 1802 chrX 906704 intron CG43867 - chrX 907605 intron CG43867 - chrX 908506 intron CG43867 - chrX_4_905001 chrX_905001 RAL-310 1039 chrX 975545 975556 chrX 975624 975627 5 76 2.5 0.0 1.2 2.3 82 chrX 975545 intergenic not near genes chrX 975586 intergenic not near genes chrX 975627 intergenic not near genes chrX_5_975001 chrX_975001 RAL-310 1040 chrX 975562 975575 chrX 975622 975655 8 77 1.0 0.0 0.5 5.3 93 chrX 975562 intergenic not near genes chrX 975608 intergenic not near genes chrX 975655 intergenic not near genes chrX_8_975001 chrX_975001 RAL-310 1041 chrX 1003116 1003128 chrX 1003604 1003616 6 488 3.0 3.5 3.2 1.4 500 chrX 1003116 intergenic not near genes chrX 1003366 intergenic not near genes chrX 1003616 intergenic not near genes chrX_6_1000001 chrX_1000001 RAL-310 1042 chrX 1050567 1050577 chrX 1050643 1050646 4 74 1.5 5.0 3.2 1.0 79 chrX 1050567 intron CR44779 + chrX 1050606 intron CR44779 + chrX 1050646 intron CR44779 + chrX_4_1050001 chrX_1050001 RAL-310 1043 chrX 1515235 1515256 chrX 1515312 1515333 6 77 1.5 2.0 1.8 2.1 98 chrX 1515235 intron inc + chrX 1515284 intron inc + chrX 1515333 intron inc + chrX_6_1515001 chrX_1515001 RAL-310 1044 chrX 1627973 1627987 chrX 1635441 1635455 gtwin 5 7467 4.5 2.5 3.5 1.1 7482 chrX 1627973 intron,intron Mur2B -,br + chrX 1631714 intron,intron Mur2B -,br + chrX 1635455 intron,intron Mur2B -,br + chrX_5_1630001 chrX_1630001 RAL-310 1045 chrX 2069376 2069401 chrX 2069469 2069501 7 96 1.5 1.0 1.2 3.2 125 chrX 2069376 intron,exon CG4199 -,CG4194 + chrX 2069438 intron,3` UTR CG4199 -,CG4194 + chrX 2069501 intron,3` UTR CG4199 -,CG4194 + chrX_7_2065001 chrX_2065001 RAL-310 1046 chrX 2399846 2399865 chrX 2408191 2408203 roo 4 8340 2.0 0.5 1.2 1.8 8357 chrX 2399846 intergenic not near genes chrX 2404024 intergenic not near genes chrX 2408203 intergenic not near genes chrX_4_2400001 chrX_2400001 RAL-310 1047 chrX 2886647 2886681 chrX 2886736 2886759 6 84 0.0 1.0 0.5 4.0 112 chrX 2886647 intron kirre + chrX 2886703 intron kirre + chrX 2886759 intron kirre + chrX_6_2885001 chrX_2885001 RAL-310 1048 chrX 2888111 2888146 chrX 2888189 2888222 5 74 1.0 1.5 1.2 2.3 111 chrX 2888111 intron kirre + chrX 2888166 intron kirre + chrX 2888222 intron kirre + chrX_5_2885001 chrX_2885001 RAL-310 1049 chrX 3038735 3038766 chrX 3038823 3038850 8 83 1.5 1.0 1.2 3.6 115 chrX 3038735 intron kirre + chrX 3038792 intron kirre + chrX 3038850 intron kirre + chrX_8_3035001 chrX_3035001 RAL-310 1050 chrX 3275525 3275557 chrX 3275612 3275624 7 83 2.0 2.5 2.2 2.2 99 chrX 3275525 intron dnc + chrX 3275574 intron dnc + chrX 3275624 intron dnc + chrX_7_3275001 chrX_3275001 RAL-310 1051 chrX 3298559 3298584 chrX 3298629 3298648 6 77 2.0 1.5 1.8 2.1 89 chrX 3298559 intron dnc + chrX 3298604 intron dnc + chrX 3298648 intron dnc + chrX_6_3295001 chrX_3295001 RAL-310 1052 chrX 3408991 3409006 chrX 3409067 3409083 4 76 3.5 1.0 2.2 1.2 92 chrX 3408991 intron,intron CR44999 +,CG12535 - chrX 3409037 intron,intron CR44999 +,CG12535 - chrX 3409083 intron,intron CR44999 +,CG12535 - chrX_4_3405001 chrX_3405001 RAL-310 1053 chrX 3493095 3493121 chrX 3502254 3502280 roo 7 9158 1.0 0.5 0.8 3.9 9185 chrX 3493095 intron,intron CR44999 +,Gas8 - chrX 3497688 intron,intron CR44999 +,Gas8 - chrX 3502280 intron,intron CR44999 +,Gas8 - chrX_7_3495001 chrX_3495001 RAL-310 1054 chrX 3597557 3597573 chrX 3619717 3619741 roo 4 22166 2.5 0.5 1.5 1.6 22184 chrX 3597557 intron AstA-R1 + chrX 3608649 intron AstA-R1 + chrX 3619741 intron AstA-R1 + chrX_4_3605001 chrX_3605001 RAL-310 1055 chrX 3866105 3866126 chrX 3866182 3866185 5 74 1.0 1.5 1.2 2.3 80 chrX 3866105 intron yin - chrX 3866145 intron yin - chrX 3866185 intron yin - chrX_5_3865001 chrX_3865001 RAL-310 1056 chrX 3881268 3881300 chrX 3881407 3881438 7 137 1.5 1.5 1.5 2.8 170 chrX 3881268 intron VhaAC39-1 + chrX 3881353 intron VhaAC39-1 + chrX 3881438 intron VhaAC39-1 + chrX_7_3880001 chrX_3880001 RAL-310 1057 chrX 3986866 3986896 chrX 3994497 3994525 412 4 7632 3.0 0.0 1.5 1.6 7659 chrX 3986866 intergenic not near genes chrX 3990696 intergenic not near genes chrX 3994525 intergenic not near genes chrX_4_3990001 chrX_3990001 RAL-310 1058 chrX 4165475 4165500 chrX 4165571 4165596 8 94 2.0 3.5 2.8 2.1 121 chrX 4165475 intron Fas2 - chrX 4165536 intron Fas2 - chrX 4165596 intron Fas2 - chrX_8_4165001 chrX_4165001 RAL-310 1059 chrX 4185692 4185719 chrX 4185777 4185801 5 84 3.0 3.5 3.2 1.2 109 chrX 4185692 intron Fas2 - chrX 4185746 intron Fas2 - chrX 4185801 intron Fas2 - chrX_5_4185001 chrX_4185001 RAL-310 1060 chrX 4191645 4191663 chrX 4191724 4191743 5 80 1.0 4.0 2.5 1.4 98 chrX 4191645 intron Fas2 - chrX 4191694 intron Fas2 - chrX 4191743 intron Fas2 - chrX_5_4190001 chrX_4190001 RAL-310 1061 chrX 4324392 4324415 chrX 4324468 4324489 6 76 0.0 1.5 0.8 3.3 97 chrX 4324392 intron norpA + chrX 4324440 intron norpA + chrX 4324489 intron norpA + chrX_6_4320001 chrX_4320001 RAL-310 1062 chrX 4885800 4885805 chrX 4885867 4885898 8 82 2.0 2.5 2.2 2.5 98 chrX 4885800 intron CG42594 + chrX 4885849 intron CG42594 + chrX 4885898 intron CG42594 + chrX_8_4885001 chrX_4885001 RAL-310 1063 chrX 4931349 4931374 chrX 4931443 4931468 5 91 8.5 4.5 6.5 0.7 119 chrX 4931349 intron CG44774 - chrX 4931408 intron CG44774 - chrX 4931468 intron CG44774 - chrX_5_4930001 chrX_4930001 RAL-310 1064 chrX 4990047 4990076 chrX 4997261 4997282 roo 6 7212 0.5 1.0 0.8 3.3 7235 chrX 4990047 intron CR44833 - chrX 4993664 intron CR44833 - chrX 4997282 intron CR44833 - chrX_6_4990001 chrX_4990001 RAL-310 1065 chrX 5134812 5134824 chrX 5134913 5134925 5 100 2.5 3.0 2.8 1.3 113 chrX 5134812 intron,intron CG15465 +,rg + chrX 5134868 intron,intron CG15465 +,rg + chrX 5134925 intron,intron CG15465 +,rg + chrX_5_5130001 chrX_5130001 RAL-310 1066 chrX 5223705 5223728 chrX 5223782 5223806 9 78 1.0 4.5 2.8 2.4 101 chrX 5223705 intron,intron CG15465 +,rg + chrX 5223756 intron,intron CG15465 +,rg + chrX 5223806 intron,intron CG15465 +,rg + chrX_9_5220001 chrX_5220001 RAL-310 1067 chrX 5432773 5432788 chrX 5432870 5432884 4 96 2.0 1.0 1.5 1.6 111 chrX 5432773 intergenic CG15784 + chrX 5432828 intergenic CG15784 + chrX 5432884 intergenic CG15784 + chrX_4_5430001 chrX_5430001 RAL-310 1068 chrX 5473595 5473616 chrX 5473661 5473692 4 71 1.0 2.5 1.8 1.4 97 chrX 5473595 intron SPR + chrX 5473644 intron SPR + chrX 5473692 intron SPR + chrX_4_5470001 chrX_5470001 RAL-310 1069 chrX 5480539 5480563 chrX 5480617 5480641 6 78 0.5 1.5 1.0 3.0 102 chrX 5480539 intron SPR + chrX 5480590 intron SPR + chrX 5480641 intron SPR + chrX_6_5480001 chrX_5480001 RAL-310 1070 chrX 5714156 5714180 chrX 5714233 5714257 5 76 1.5 3.0 2.2 1.6 101 chrX 5714156 intron CG33080 - chrX 5714206 intron CG33080 - chrX 5714257 intron CG33080 - chrX_5_5710001 chrX_5710001 RAL-310 1071 chrX 6037553 6037579 chrX 6037733 6037761 7 182 2.0 1.5 1.8 2.5 208 chrX 6037553 intron rux - chrX 6037657 intron rux - chrX 6037761 5` UTR rux - chrX_7_6035001 chrX_6035001 RAL-310 1072 chrX 6118696 6118732 chrX 6118778 6118789 13 78 0.5 2.5 1.5 5.2 93 chrX 6118696 intron Ca-alpha1T - chrX 6118742 intron Ca-alpha1T - chrX 6118789 intron Ca-alpha1T - chrX_13_6115001 chrX_6115001 RAL-310 1073 chrX 6171581 6171609 chrX 6179014 6179042 Quasimodo 6 7431 1.5 0.5 1.0 3.0 7461 chrX 6171581 intron Ca-alpha1T - chrX 6175312 intron Ca-alpha1T - chrX 6179042 intron Ca-alpha1T - chrX_6_6175001 chrX_6175001 RAL-310 1074 chrX 6335217 6335242 chrX 6337727 6337751 Tirant 12 2510 0.5 1.0 0.8 6.7 2534 chrX 6335217 intergenic not near genes chrX 6336484 intergenic not near genes chrX 6337751 intergenic CG3842 + chrX_12_6335001 chrX_6335001 RAL-310 1075 chrX 6388676 6388695 chrX 6388752 6388767 4 75 0.5 0.0 0.2 3.3 91 chrX 6388676 intergenic not near genes chrX 6388722 intergenic not near genes chrX 6388767 intergenic not near genes chrX_4_6385001 chrX_6385001 RAL-310 1076 chrX 6392877 6392901 chrX 6397642 6397666 Doc 8 4762 1.0 3.5 2.2 2.5 4789 chrX 6392877 intergenic not near genes chrX 6395272 intergenic not near genes chrX 6397666 intergenic not near genes chrX_8_6395001 chrX_6395001 RAL-310 1077 chrX 6562819 6562845 chrX 6571300 6571316 Tirant 5 8479 4.0 3.5 3.8 1.0 8497 chrX 6562819 intron CG34417 + chrX 6567068 intron CG34417 + chrX 6571316 intron CG34417 + chrX_5_6565001 chrX_6565001 RAL-310 1078 chrX 6605486 6605502 chrX 6608506 6608523 Burdock 4 3021 0.0 3.0 1.5 1.6 3037 chrX 6605486 intron pigs + chrX 6607004 intron pigs + chrX 6608523 intron pigs + chrX_4_6605001 chrX_6605001 RAL-310 1079 chrX 6624709 6624731 chrX 6624817 6624835 4 108 1.5 1.0 1.2 1.8 126 chrX 6624709 intron pigs + chrX 6624772 intron pigs + chrX 6624835 intron pigs + chrX_4_6620001 chrX_6620001 RAL-310 1080 chrX 6897568 6897710 chrX 6897644 6897820 6 99 1.0 1.0 1.0 3.0 252 chrX 6897568 intergenic not near genes chrX 6897694 intergenic not near genes chrX 6897820 intergenic not near genes chrX_6_6895001 chrX_6895001 RAL-310 1081 chrX 7023604 7023625 chrX 7030990 7031015 Tabor 7 7389 2.5 2.0 2.2 2.2 7411 chrX 7023604 intron CG12541 - chrX 7027310 intron CG12541 - chrX 7031015 intron CG12541 - chrX_7_7025001 chrX_7025001 RAL-310 1082 chrX 7048919 7048949 chrX 7048994 7049014 5 71 1.0 1.0 1.0 2.5 95 chrX 7048919 intron CG12541 - chrX 7048966 intron CG12541 - chrX 7049014 intron CG12541 - chrX_5_7045001 chrX_7045001 RAL-310 1083 chrX 7702905 7702930 chrX 7703344 7703369 jockey 4 438 3.5 2.5 3.0 1.0 464 chrX 7702905 intron CHES-1-like - chrX 7703137 intron CHES-1-like - chrX 7703369 intron CHES-1-like - chrX_4_7700001 chrX_7700001 RAL-310 1084 chrX 7845732 7845752 chrX 7847222 7847243 hopper2 6 1488 3.5 2.0 2.8 1.6 1511 chrX 7845732 intergenic not near genes chrX 7846488 intergenic not near genes chrX 7847243 intergenic not near genes chrX_6_7845001 chrX_7845001 RAL-310 1085 chrX 8092293 8092323 chrX 8092378 8092408 6 85 1.0 1.0 1.0 3.0 115 chrX 8092293 intron Ubc-E2H - chrX 8092350 intron Ubc-E2H - chrX 8092408 intron Ubc-E2H - chrX_6_8090001 chrX_8090001 RAL-310 1086 chrX 8275317 8275348 chrX 8275403 8275435 9 83 3.0 6.0 4.5 1.6 118 chrX 8275317 exon CG1636 + chrX 8275376 3` UTR CG1636 + chrX 8275435 3` UTR CG1636 + chrX_9_8275001 chrX_8275001 RAL-310 1087 chrX 8569499 8569528 chrX 8569626 8569629 6 117 2.0 2.0 2.0 2.0 130 chrX 8569499 3` UTR Trf4-1 + chrX 8569564 3` UTR Trf4-1 + chrX 8569629 3` UTR Trf4-1 + chrX_6_8565001 chrX_8565001 RAL-310 1088 chrX 8708693 8708715 chrX 8708876 8708898 5 185 12.5 2.0 7.2 0.6 205 chrX 8708693 intergenic not near genes chrX 8708796 intergenic not near genes chrX 8708898 intergenic not near genes chrX_5_8705001 chrX_8705001 RAL-310 1089 chrX 8730448 8730473 chrX 8730524 8730549 7 76 1.0 5.0 3.0 1.8 101 chrX 8730448 intergenic not near genes chrX 8730498 intergenic not near genes chrX 8730549 intergenic not near genes chrX_7_8730001 chrX_8730001 RAL-310 1090 chrX 8920043 8920051 chrX 8920156 8920164 4 113 4.5 1.5 3.0 1.0 121 chrX 8920043 intron,3` UTR rdgA +,CR44111 - chrX 8920104 intron,3` UTR rdgA +,CR44111 - chrX 8920164 intron,intron rdgA +,CR44111 - chrX_4_8920001 chrX_8920001 RAL-310 1091 chrX 9062724 9062738 chrX 9062802 9062816 4 78 2.0 1.0 1.5 1.6 92 chrX 9062724 intron CG15365 - chrX 9062770 intron CG15365 - chrX 9062816 intron CG15365 - chrX_4_9060001 chrX_9060001 RAL-310 1092 chrX 9337946 9337971 chrX 9338035 9338063 9 90 1.5 0.5 1.0 4.5 117 chrX 9337946 intron CG34449 - chrX 9338004 intron CG34449 - chrX 9338063 exon CG34449 - chrX_9_9335001 chrX_9335001 RAL-310 1093 chrX 9508136 9508165 chrX 9509652 9509683 jockey 4 1518 1.5 2.5 2.0 1.3 1547 chrX 9508136 intron CG32700 - chrX 9508910 intron CG32700 - chrX 9509683 intron CG32700 - chrX_4_9505001 chrX_9505001 RAL-310 1094 chrX 10138228 10138244 chrX 10145732 10145748 412 4 7504 1.5 2.0 1.8 1.4 7520 chrX 10138228 intron,intron RhoU +,CR44894 - chrX 10141988 intron,intron RhoU +,CR44894 - chrX 10145748 intron,intron RhoU +,CR44894 - chrX_4_10140001 chrX_10140001 RAL-310 1095 chrX 10550336 10550359 chrX 10550414 10550430 4 75 1.5 0.5 1.0 2.0 94 chrX 10550336 intron spri - chrX 10550383 intron spri - chrX 10550430 intron spri - chrX_4_10550001 chrX_10550001 RAL-310 1096 chrX 10550862 10550881 chrX 10552320 10552346 hobo 8 1465 6.0 1.5 3.8 1.7 1484 chrX 10550862 intron spri - chrX 10551604 intron spri - chrX 10552346 intron spri - chrX_8_10550001 chrX_10550001 RAL-310 1097 chrX 10686050 10686082 chrX 10691186 10691219 roo 4 5137 1.5 2.0 1.8 1.4 5169 chrX 10686050 intron X11Lbeta + chrX 10688634 intron X11Lbeta + chrX 10691219 intron X11Lbeta + chrX_4_10685001 chrX_10685001 RAL-310 1098 chrX 10772679 10772698 chrX 10772759 10772781 Tirant 8 80 2.0 1.5 1.8 2.9 102 chrX 10772679 intron CG15211 + chrX 10772730 intron CG15211 + chrX 10772781 intron CG15211 + chrX_8_10770001 chrX_10770001 RAL-310 1099 chrX 11087862 11087886 chrX 11087956 11087960 8 91 2.5 0.0 1.2 3.6 98 chrX 11087862 intergenic not near genes chrX 11087911 intergenic not near genes chrX 11087960 intergenic not near genes chrX_8_11085001 chrX_11085001 RAL-310 1100 chrX 11268570 11268584 chrX 11270053 11270076 hopper2 4 1490 3.5 3.0 3.2 1.0 1506 chrX 11268570 intron CG44422 - chrX 11269323 intron CG44422 - chrX 11270076 intron CG44422 - chrX_4_11265001 chrX_11265001 RAL-310 1101 chrX 11312066 11312085 chrX 11319419 11319421 Stalker2 7 7351 1.0 1.5 1.2 3.2 7355 chrX 11312066 intergenic not near genes chrX 11315744 intergenic not near genes chrX 11319421 intergenic not near genes chrX_7_11315001 chrX_11315001 RAL-310 1102 chrX 11922367 11922383 chrX 11922500 11922516 4 133 1.5 1.5 1.5 1.6 149 chrX 11922367 exon Sclp - chrX 11922442 intron Sclp - chrX 11922516 intron Sclp - chrX_4_11920001 chrX_11920001 RAL-310 1103 chrX 12350776 12350783 chrX 12350856 12350864 4 80 4.5 0.5 2.5 1.1 88 chrX 12350776 intergenic not near genes chrX 12350820 intergenic not near genes chrX 12350864 intergenic not near genes chrX_4_12350001 chrX_12350001 RAL-310 1104 chrX 12532649 12532662 chrX 12532794 12532807 5 146 0.5 0.0 0.2 4.2 158 chrX 12532649 intron CG43921 - chrX 12532728 intron CG43921 - chrX 12532807 intron CG43921 - chrX_5_12530001 chrX_12530001 RAL-310 1105 chrX 12752281 12752295 chrX 12752368 12752369 5 84 3.0 1.5 2.2 1.6 88 chrX 12752281 5` UTR CR44619 + chrX 12752325 5` UTR CR44619 + chrX 12752369 5` UTR CR44619 + chrX_5_12750001 chrX_12750001 RAL-310 1106 chrX 12752300 12752307 chrX 12752365 12752394 4 77 1.0 1.5 1.2 1.8 94 chrX 12752300 5` UTR CR44619 + chrX 12752347 5` UTR CR44619 + chrX 12752394 5` UTR CR44619 + chrX_4_12750001 chrX_12750001 RAL-310 1107 chrX 13172350 13172374 chrX 13172426 13172450 6 76 2.0 2.0 2.0 2.0 100 chrX 13172350 exon CG34411 - chrX 13172400 intron CG34411 - chrX 13172450 intron CG34411 - chrX_6_13170001 chrX_13170001 RAL-310 1108 chrX 13222103 13222134 chrX 13222188 13222219 4 85 0.5 3.0 1.8 1.4 116 chrX 13222103 intron mew - chrX 13222161 intron mew - chrX 13222219 intron mew - chrX_4_13220001 chrX_13220001 RAL-310 1109 chrX 13316339 13316362 chrX 13316416 13316439 7 78 1.5 1.0 1.2 3.2 100 chrX 13316339 intron IP3K2 + chrX 13316389 intron IP3K2 + chrX 13316439 intron IP3K2 + chrX_7_13315001 chrX_13315001 RAL-310 1110 chrX 13442139 13442168 chrX 13442230 13442259 4 91 0.5 0.5 0.5 2.7 120 chrX 13442139 intergenic not near genes chrX 13442199 intergenic not near genes chrX 13442259 intergenic not near genes chrX_4_13440001 chrX_13440001 RAL-310 1111 chrX 13507316 13507338 chrX 13507397 13507409 7 78 1.5 2.5 2.0 2.3 93 chrX 13507316 intron Neto + chrX 13507362 intron Neto + chrX 13507409 intron Neto + chrX_7_13505001 chrX_13505001 RAL-310 1112 chrX 13875969 13875989 chrX 13876053 13876073 6 83 0.0 0.0 0.0 6.0 104 chrX 13875969 intron mamo - chrX 13876021 intron mamo - chrX 13876073 intron mamo - chrX_6_13875001 chrX_13875001 RAL-310 1113 chrX 13975876 13975903 chrX 13975953 13975977 4 76 0.0 1.0 0.5 2.7 101 chrX 13975876 intron mamo - chrX 13975926 intron mamo - chrX 13975977 intron mamo - chrX_4_13975001 chrX_13975001 RAL-310 1114 chrX 14331760 14331793 chrX 14332094 14332127 4 333 1.0 2.5 1.8 1.4 367 chrX 14331760 intron dpr8 + chrX 14331944 intron dpr8 + chrX 14332127 intron dpr8 + chrX_4_14330001 chrX_14330001 RAL-310 1115 chrX 14572882 14572908 chrX 14572968 14572996 8 86 2.5 2.0 2.2 2.5 114 chrX 14572882 intergenic not near genes chrX 14572939 intergenic not near genes chrX 14572996 intergenic not near genes chrX_8_14570001 chrX_14570001 RAL-310 1116 chrX 14636462 14636481 chrX 14641903 14641922 I-element 7 5437 6.0 3.5 4.8 1.2 5460 chrX 14636462 intron NetA - chrX 14639192 intron NetA - chrX 14641922 intron NetA - chrX_7_14635001 chrX_14635001 RAL-310 1117 chrX 14716840 14716870 chrX 14717181 14717183 7 336 1.5 1.5 1.5 2.8 343 chrX 14716840 intron NetB - chrX 14717012 intron NetB - chrX 14717183 intron NetB - chrX_7_14715001 chrX_14715001 RAL-310 1118 chrX 14786692 14786719 chrX 14787088 14787109 4 392 1.0 3.0 2.0 1.3 417 chrX 14786692 intron CR45522 + chrX 14786900 5` UTR CR45522 + chrX 14787109 5` UTR CR45522 + chrX_4_14785001 chrX_14785001 RAL-310 1119 chrX 14802333 14802347 chrX 14802692 14802695 4 362 1.5 3.0 2.2 1.2 362 chrX 14802333 intron rut - chrX 14802514 intron rut - chrX 14802695 intron rut - chrX_4_14800001 chrX_14800001 RAL-310 1120 chrX 14952442 14952466 chrX 14952610 14952634 5 168 2.0 2.5 2.2 1.6 192 chrX 14952442 intron,3` UTR pdgy -,CR44831 - chrX 14952538 intron,3` UTR pdgy -,CR44831 - chrX 14952634 intron,3` UTR pdgy -,CR44831 - chrX_5_14950001 chrX_14950001 RAL-310 1121 chrX 15259858 15259883 chrX 15259945 15259968 5 87 3.0 4.5 3.8 1.0 110 chrX 15259858 intergenic not near genes chrX 15259913 intergenic not near genes chrX 15259968 intergenic not near genes chrX_5_15255001 chrX_15255001 RAL-310 1122 chrX 15264779 15264808 chrX 15264861 15264890 5 82 1.0 1.0 1.0 2.5 111 chrX 15264779 intergenic not near genes chrX 15264834 intergenic not near genes chrX 15264890 intergenic not near genes chrX_5_15260001 chrX_15260001 RAL-310 1123 chrX 15273715 15273733 chrX 15274882 15274898 1360 5 1164 4.0 6.5 5.2 0.8 1183 chrX 15273715 intergenic not near genes chrX 15274306 intergenic not near genes chrX 15274898 intergenic not near genes chrX_5_15270001 chrX_15270001 RAL-310 1124 chrX 16140138 16140168 chrX 16140221 16140249 6 81 0.5 1.5 1.0 3.0 111 chrX 16140138 intron disco-r - chrX 16140194 intron disco-r - chrX 16140249 intron disco-r - chrX_6_16140001 chrX_16140001 RAL-310 1125 chrX 16326567 16326593 chrX 16328783 16328808 7 2217 30.5 22.0 26.2 0.3 2241 chrX 16326567 exon CalpC + chrX 16327688 exon CalpC + chrX 16328808 3` UTR CG9919 - chrX_7_16325001 chrX_16325001 RAL-310 1126 chrX 16492649 16492679 chrX 16498226 16498256 mdg3 4 5576 1.5 2.0 1.8 1.4 5607 chrX 16492649 intron para - chrX 16495452 intron para - chrX 16498256 intron para - chrX_4_16495001 chrX_16495001 RAL-310 1127 chrX 16529425 16529435 chrX 16529536 16529546 4 111 0.0 3.5 1.8 1.4 121 chrX 16529425 intron para - chrX 16529486 intron para - chrX 16529546 intron para - chrX_4_16525001 chrX_16525001 RAL-310 1128 chrX 16689629 16689653 chrX 16689709 16689716 9 78 2.0 3.0 2.5 2.6 87 chrX 16689629 intron Sep4 - chrX 16689672 intron Sep4 - chrX 16689716 intron Sep4 - chrX_9_16685001 chrX_16685001 RAL-310 1129 chrX 17282887 17282907 chrX 17282953 17282966 7 73 4.5 1.0 2.8 1.8 79 chrX 17282887 intron CG5445 + chrX 17282926 5` UTR CG5445 + chrX 17282966 5` UTR CG5445 + chrX_7_17280001 chrX_17280001 RAL-310 1130 chrX 17352598 17352615 chrX 17352691 17352718 5 100 0.5 1.0 0.8 2.8 120 chrX 17352598 intergenic not near genes chrX 17352658 intergenic not near genes chrX 17352718 intergenic not near genes chrX_5_17350001 chrX_17350001 RAL-310 1131 chrX 17545012 17545031 chrX 17545093 17545113 6 78 2.5 4.0 3.2 1.4 101 chrX 17545012 intron CG43658 - chrX 17545062 intron CG43658 - chrX 17545113 intron CG43658 - chrX_6_17545001 chrX_17545001 RAL-310 1132 chrX 17556942 17556965 chrX 17557440 17557449 mdg1 5 491 4.0 1.0 2.5 1.4 507 chrX 17556942 intron CG43658 - chrX 17557196 intron CG43658 - chrX 17557449 intron CG43658 - chrX_5_17555001 chrX_17555001 RAL-310 1133 chrX 18429498 18429519 chrX 18434809 18434828 Transpac 4 5310 1.0 0.5 0.8 2.2 5330 chrX 18429498 intergenic not near genes chrX 18432163 intergenic not near genes chrX 18434828 intergenic not near genes chrX_4_18430001 chrX_18430001 RAL-310 1134 chrX 18474402 18474433 chrX 18474519 18474544 5 111 0.0 2.5 1.2 2.3 142 chrX 18474402 intron CG32547 - chrX 18474473 intron CG32547 - chrX 18474544 intron CG32547 - chrX_5_18470001 chrX_18470001 RAL-310 1135 chrX 18645013 18645049 chrX 18645111 18645147 5 98 1.0 3.0 2.0 1.7 134 chrX 18645013 intron Rip11 - chrX 18645080 intron Rip11 - chrX 18645147 intron Rip11 - chrX_5_18645001 chrX_18645001 RAL-310 1136 chrX 18896519 18896538 chrX 18896629 18896637 4 108 1.5 0.0 0.8 2.2 118 chrX 18896519 3` UTR CG7349 + chrX 18896578 3` UTR CG7349 + chrX 18896637 intergenic CG7349 + chrX_4_18895001 chrX_18895001 RAL-310 1137 chrX 18910391 18910408 chrX 18910481 18910498 6 90 4.0 3.5 3.8 1.2 107 chrX 18910391 3` UTR CG7378 + chrX 18910444 3` UTR CG7378 + chrX 18910498 3` UTR CG7378 + chrX_6_18910001 chrX_18910001 RAL-310 1138 chrX 19014359 19014382 chrX 19014438 19014445 4 71 1.0 3.0 2.0 1.3 86 chrX 19014359 intron CG43759 + chrX 19014402 intron CG43759 + chrX 19014445 intron CG43759 + chrX_4_19010001 chrX_19010001 RAL-310 1139 chrX 19136552 19136567 chrX 19143472 19143486 412 5 6919 2.5 1.5 2.0 1.7 6934 chrX 19136552 intergenic not near genes chrX 19140019 intergenic not near genes chrX 19143486 3` UTR RhoGAP18B - chrX_5_19140001 chrX_19140001 RAL-310 1140 chrX 19472129 19472156 chrX 19472699 19472726 jockey 5 570 4.5 2.0 3.2 1.2 597 chrX 19472129 intergenic kek5 + chrX 19472428 intergenic not near genes chrX 19472726 intergenic not near genes chrX_5_19470001 chrX_19470001 RAL-310 1141 chrX 19593954 19593977 chrX 19594031 19594062 6 84 0.5 4.5 2.5 1.7 108 chrX 19593954 exon CG14205 + chrX 19594008 intron CG14205 + chrX 19594062 intron CG14205 + chrX_6_19590001 chrX_19590001 RAL-310 1142 chrX 19710088 19710104 chrX 19711874 19711890 S-element 8 1785 2.5 5.5 4.0 1.6 1802 chrX 19710088 intron meso18E - chrX 19710989 intron meso18E - chrX 19711890 intron meso18E - chrX_8_19710001 chrX_19710001 RAL-310 1143 chrX 19866045 19866055 chrX 19866124 19866128 4 77 3.0 3.0 3.0 1.0 83 chrX 19866045 intergenic Hers + chrX 19866086 intergenic Hers + chrX 19866128 intergenic Hers + chrX_4_19865001 chrX_19865001 RAL-310 1144 chrX 19866059 19866072 chrX 19866121 19866148 4 72 1.5 2.5 2.0 1.3 89 chrX 19866059 intergenic Hers + chrX 19866104 intergenic Hers + chrX 19866148 5` UTR Hers + chrX_4_19865001 chrX_19865001 RAL-310 1145 chrX 19884086 19884112 chrX 19884162 19884182 4 74 3.0 2.0 2.5 1.1 96 chrX 19884086 intron Hers + chrX 19884134 intron Hers + chrX 19884182 intron Hers + chrX_4_19880001 chrX_19880001 RAL-310 1146 chrX 19897381 19897411 chrX 19897458 19897488 6 72 3.0 0.5 1.8 2.1 107 chrX 19897381 intron Hers + chrX 19897434 intron Hers + chrX 19897488 intron Hers + chrX_6_19895001 chrX_19895001 RAL-310 1147 chrX 19983866 19983896 chrX 19983946 19983950 4 70 1.0 0.5 0.8 2.2 84 chrX 19983866 intergenic not near genes chrX 19983908 intergenic not near genes chrX 19983950 intergenic not near genes chrX_4_19980001 chrX_19980001 RAL-310 1148 chrX 20052790 20052812 chrX 20052871 20052893 5 83 1.5 0.5 1.0 2.5 103 chrX 20052790 intron Dop2R - chrX 20052842 intron Dop2R - chrX 20052893 intron Dop2R - chrX_5_20050001 chrX_20050001 RAL-310 1149 chrX 20257751 20257777 chrX 20257837 20257863 5 85 0.5 2.5 1.5 2.0 112 chrX 20257751 intergenic not near genes chrX 20257807 intergenic not near genes chrX 20257863 intergenic not near genes chrX_5_20255001 chrX_20255001 RAL-310 1150 chrX 20344927 20344944 chrX 20345056 20345073 4 126 0.0 2.5 1.2 1.8 146 chrX 20344927 intergenic not near genes chrX 20345000 intergenic not near genes chrX 20345073 intergenic not near genes chrX_4_20345001 chrX_20345001 RAL-310 1151 chrX 20377325 20377347 chrX 20378785 20378814 hobo 5 1464 2.0 6.0 4.0 1.0 1489 chrX 20377325 intergenic not near genes chrX 20378070 intergenic not near genes chrX 20378814 intergenic not near genes chrX_5_20375001 chrX_20375001 RAL-310 1152 chrX 20503113 20503118 chrX 20503186 20503186 5 77 2.0 3.0 2.5 1.4 73 chrX 20503113 intron RhoGAP19D - chrX 20503150 intron RhoGAP19D - chrX 20503186 intron RhoGAP19D - chrX_5_20500001 chrX_20500001 RAL-310 1153 chrX 20940726 20940754 chrX 20942188 20942222 hobo 11 1465 2.5 3.5 3.0 2.8 1496 chrX 20940726 intergenic not near genes chrX 20941474 intergenic not near genes chrX 20942222 intergenic not near genes chrX_11_20940001 chrX_20940001 RAL-310 1154 chrX 21042555 21042587 chrX 21045340 21045372 13 2786 14.5 16.5 15.5 0.8 2817 chrX 21042555 exon Mgstl + chrX 21043964 exon,3` UTR Mgstl +,CR44431 - chrX 21045372 intron Cbs + chrX_13_21040001 chrX_21040001 RAL-310 1155 chrX 21516991 21517020 chrX 21517070 21517098 7 72 1.0 2.5 1.8 2.5 107 chrX 21516991 intron CR45082 - chrX 21517044 intron CR45082 - chrX 21517098 intron CR45082 - chrX_7_21515001 chrX_21515001 RAL-310 1156 chrX 22697497 22697522 chrX 22701794 22701819 Juan 5 4297 1.5 2.5 2.0 1.7 4322 chrX 22697497 intron CR44997 + chrX 22699658 intron CR44997 + chrX 22701819 intron CR44997 + chrX_5_22695001 chrX_22695001 RAL-310 1157 chrX 22870879 22870900 chrX 22870970 22870989 6 90 1.0 3.0 2.0 2.0 110 chrX 22870879 intron,3` UTR CG42346 +,CR43656 - chrX 22870934 intron,3` UTR CG42346 +,CR43656 - chrX 22870989 intron,3` UTR CG42346 +,CR43656 - chrX_6_22870001 chrX_22870001 RAL-310 1158 chrX 22922528 22922550 chrX 22922607 22922630 6 79 0.5 3.0 1.8 2.1 102 chrX 22922528 intergenic not near genes chrX 22922579 intergenic not near genes chrX 22922630 intergenic not near genes chrX_6_22920001 chrX_22920001 RAL-310 1159 chrX 22982845 22982856 chrX 22983028 22983039 5 183 2.5 1.5 2.0 1.7 194 chrX 22982845 intron,intron stnA -,stnB - chrX 22982942 intron,intron stnA -,stnB - chrX 22983039 intron,intron stnA -,stnB - chrX_5_22980001 chrX_22980001 RAL-310 1160 chrX 22996312 22996333 chrX 23003541 23003567 roo 6 7232 4.0 1.5 2.8 1.6 7255 chrX 22996312 intron,intron stnA -,stnB - chrX 22999940 intron,intron stnA -,stnB - chrX 23003567 intron,intron stnA -,stnB - chrX_6_22995001 chrX_22995001 RAL-310