SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 47465 47491 chr2L 52564 52592 jockey 12 5100 2.0 6.5 4.2 2.3 5127 chr2L 47465 intron Cda5 - chr2L 50028 intron Cda5 - chr2L 52592 intron Cda5 - chr2L_12_50001 chr2L_50001 RAL-309 2 chr2L 137603 137633 chr2L 137723 137753 6 120 2.5 2.5 2.5 1.7 150 chr2L 137603 intron CG11455 + chr2L 137678 intron CG11455 + chr2L 137753 intron CG11455 + chr2L_6_135001 chr2L_135001 RAL-309 3 chr2L 325135 325155 chr2L 325212 325230 7 75 7.0 6.0 6.5 0.9 95 chr2L 325135 intron Plc21C + chr2L 325182 intron Plc21C + chr2L 325230 intron Plc21C + chr2L_7_325001 chr2L_325001 RAL-309 4 chr2L 429319 429344 chr2L 429422 429441 10 102 2.5 1.5 2.0 3.3 122 chr2L 429319 intergenic not near genes chr2L 429380 intergenic not near genes chr2L 429441 intergenic not near genes chr2L_10_425001 chr2L_425001 RAL-309 5 chr2L 467361 467496 chr2L 467458 467583 14 88 3.5 3.0 3.2 3.3 222 chr2L 467361 intron CG4297 - chr2L 467472 intron CG4297 - chr2L 467583 intron CG4297 - chr2L_14_465001 chr2L_465001 RAL-309 6 chr2L 590341 590343 chr2L 590433 590435 4 92 1.5 3.5 2.5 1.1 94 chr2L 590341 intron Gsc - chr2L 590388 intron Gsc - chr2L 590435 intron Gsc - chr2L_4_590001 chr2L_590001 RAL-309 7 chr2L 666279 666306 chr2L 666355 666369 7 74 2.0 0.0 1.0 3.5 90 chr2L 666279 intron ds - chr2L 666324 intron ds - chr2L 666369 intron ds - chr2L_7_665001 chr2L_665001 RAL-309 8 chr2L 686922 686940 chr2L 695962 695966 roo 4 9036 3.0 2.0 2.5 1.1 9044 chr2L 686922 intron ds - chr2L 691444 intron ds - chr2L 695966 intron ds - chr2L_4_690001 chr2L_690001 RAL-309 9 chr2L 764554 764576 chr2L 764654 764676 4 100 1.5 2.5 2.0 1.3 122 chr2L 764554 intergenic not near genes chr2L 764615 intergenic not near genes chr2L 764676 intergenic not near genes chr2L_4_760001 chr2L_760001 RAL-309 10 chr2L 770464 770484 chr2L 772244 772265 Bari1 7 1775 2.5 2.0 2.2 2.2 1801 chr2L 770464 intergenic not near genes chr2L 771364 intergenic not near genes chr2L 772265 intergenic CR44614 + chr2L_7_770001 chr2L_770001 RAL-309 11 chr2L 778834 778866 chr2L 778917 778935 7 79 1.5 3.0 2.2 2.2 101 chr2L 778834 intergenic CG13947 + chr2L 778884 intergenic CG13947 + chr2L 778935 intergenic CG13947 + chr2L_7_775001 chr2L_775001 RAL-309 12 chr2L 922477 922495 chr2L 922558 922575 5 79 0.5 3.0 1.8 1.8 98 chr2L 922477 intergenic CG4341 + chr2L 922526 intergenic CG4341 + chr2L 922575 intergenic CG4341 + chr2L_5_920001 chr2L_920001 RAL-309 13 chr2L 927864 927876 chr2L 928006 928027 4 148 3.0 1.0 2.0 1.3 163 chr2L 927864 intron CG4341 + chr2L 927946 intron CG4341 + chr2L 928027 intron CG4341 + chr2L_4_925001 chr2L_925001 RAL-309 14 chr2L 936581 936591 chr2L 936671 936675 6 89 1.5 0.5 1.0 3.0 94 chr2L 936581 intron CG4341 + chr2L 936628 intron CG4341 + chr2L 936675 intron CG4341 + chr2L_6_935001 chr2L_935001 RAL-309 15 chr2L 964559 964574 chr2L 964642 964658 4 83 4.0 4.0 4.0 0.8 99 chr2L 964559 intergenic not near genes chr2L 964608 intergenic not near genes chr2L 964658 intergenic not near genes chr2L_4_960001 chr2L_960001 RAL-309 16 chr2L 976879 976902 chr2L 984513 984515 roo 9 7633 1.0 0.5 0.8 5.0 7636 chr2L 976879 intergenic not near genes chr2L 980697 intergenic not near genes chr2L 984515 intergenic not near genes chr2L_9_980001 chr2L_980001 RAL-309 17 chr2L 1035564 1035593 chr2L 1035640 1035670 6 77 1.5 3.0 2.2 1.9 106 chr2L 1035564 intron IA-2 - chr2L 1035617 intron IA-2 - chr2L 1035670 intron IA-2 - chr2L_6_1035001 chr2L_1035001 RAL-309 18 chr2L 1188780 1188794 chr2L 1188859 1188859 4 75 2.0 4.0 3.0 1.0 79 chr2L 1188780 intron CG5001 + chr2L 1188820 intron CG5001 + chr2L 1188859 intron CG5001 + chr2L_4_1185001 chr2L_1185001 RAL-309 19 chr2L 1220136 1220161 chr2L 1227602 1227602 blood 10 7462 0.5 6.5 3.5 2.2 7466 chr2L 1220136 intron CG42329 + chr2L 1223869 intron CG42329 + chr2L 1227602 intron CG42329 + chr2L_10_1220001 chr2L_1220001 RAL-309 20 chr2L 1261158 1261255 chr2L 1261225 1261336 4 78 0.0 0.0 0.0 4.0 178 chr2L 1261158 intron robo3 + chr2L 1261247 intron robo3 + chr2L 1261336 intron robo3 + chr2L_4_1260001 chr2L_1260001 RAL-309 21 chr2L 1322030 1322047 chr2L 1322111 1322136 5 85 2.5 0.5 1.5 2.0 106 chr2L 1322030 intergenic not near genes chr2L 1322083 intergenic not near genes chr2L 1322136 intergenic not near genes chr2L_5_1320001 chr2L_1320001 RAL-309 22 chr2L 1422346 1422378 chr2L 1422458 1422465 11 109 1.0 2.0 1.5 4.4 119 chr2L 1422346 intergenic not near genes chr2L 1422406 intergenic not near genes chr2L 1422465 intergenic not near genes chr2L_11_1420001 chr2L_1420001 RAL-309 23 chr2L 1508050 1508267 chr2L 1508133 1508354 8 79 2.5 2.0 2.2 2.5 304 chr2L 1508050 intergenic not near genes chr2L 1508202 intergenic not near genes chr2L 1508354 intergenic not near genes chr2L_8_1505001 chr2L_1505001 RAL-309 24 chr2L 1570701 1570723 chr2L 1573554 1573595 F-element 5 2868 2.5 2.0 2.2 1.6 2894 chr2L 1570701 intron haf + chr2L 1572148 intron haf + chr2L 1573595 intron haf + chr2L_5_1570001 chr2L_1570001 RAL-309 25 chr2L 1591863 1591893 chr2L 1591947 1591977 9 82 0.0 1.0 0.5 6.0 114 chr2L 1591863 intron haf + chr2L 1591920 intron haf + chr2L 1591977 intron haf + chr2L_9_1590001 chr2L_1590001 RAL-309 26 chr2L 1678980 1679009 chr2L 1686444 1686474 blood 6 7465 0.5 3.0 1.8 2.1 7494 chr2L 1678980 intron chinmo + chr2L 1682727 intron chinmo + chr2L 1686474 intron chinmo + chr2L_6_1680001 chr2L_1680001 RAL-309 27 chr2L 1711355 1711389 chr2L 1711679 1711696 mdg3 7 316 3.0 4.0 3.5 1.6 341 chr2L 1711355 3` UTR,3` UTR mRpL48 +,frtz - chr2L 1711526 3` UTR frtz - chr2L 1711696 3` UTR frtz - chr2L_7_1710001 chr2L_1710001 RAL-309 28 chr2L 1721824 1721856 chr2L 1721908 1721940 6 82 0.5 2.5 1.5 2.4 116 chr2L 1721824 intron Rim2 - chr2L 1721882 intron Rim2 - chr2L 1721940 intron Rim2 - chr2L_6_1720001 chr2L_1720001 RAL-309 29 chr2L 1785677 1785688 chr2L 1785767 1785779 6 91 5.5 6.0 5.8 0.9 102 chr2L 1785677 intergenic Gr22e + chr2L 1785728 intergenic Gr22e + chr2L 1785779 intergenic Gr22e + chr2L_6_1785001 chr2L_1785001 RAL-309 30 chr2L 1867748 1867782 chr2L 1867825 1867831 11 72 0.5 2.5 1.5 4.4 83 chr2L 1867748 intron CG31663 - chr2L 1867790 intron CG31663 - chr2L 1867831 intron CG31663 - chr2L_11_1865001 chr2L_1865001 RAL-309 31 chr2L 1868229 1868256 chr2L 1868435 1868462 7 203 1.5 2.5 2.0 2.3 233 chr2L 1868229 intron CG31663 - chr2L 1868346 intron CG31663 - chr2L 1868462 intron CG31663 - chr2L_7_1865001 chr2L_1865001 RAL-309 32 chr2L 2100383 2100399 chr2L 2109533 2109549 roo 4 9148 5.0 1.0 3.0 1.0 9166 chr2L 2100383 intron dpr3 - chr2L 2104966 intron dpr3 - chr2L 2109549 intron dpr3 - chr2L_4_2100001 chr2L_2100001 RAL-309 33 chr2L 2112126 2112141 chr2L 2119788 2119793 opus 5 7660 1.5 6.5 4.0 1.0 7667 chr2L 2112126 intergenic not near genes chr2L 2115960 intergenic not near genes chr2L 2119793 intergenic not near genes chr2L_5_2115001 chr2L_2115001 RAL-309 34 chr2L 2155585 2155607 chr2L 2155668 2155686 4 80 2.5 1.5 2.0 1.3 101 chr2L 2155585 intergenic CG15382 +,AIF + chr2L 2155636 intergenic CG15382 +,AIF + chr2L 2155686 intergenic CG15382 +,AIF + chr2L_4_2155001 chr2L_2155001 RAL-309 35 chr2L 2260810 2260833 chr2L 2260895 2260919 10 84 3.0 4.5 3.8 2.1 109 chr2L 2260810 intergenic not near genes chr2L 2260864 intergenic not near genes chr2L 2260919 intergenic not near genes chr2L_10_2260001 chr2L_2260001 RAL-309 36 chr2L 2294057 2294074 chr2L 2299247 2299279 copia 4 5200 1.5 1.0 1.2 1.8 5222 chr2L 2294057 intergenic not near genes chr2L 2296668 intergenic not near genes chr2L 2299279 intergenic not near genes chr2L_4_2295001 chr2L_2295001 RAL-309 37 chr2L 2310819 2310827 chr2L 2311073 2311083 4 262 3.0 2.0 2.5 1.1 264 chr2L 2310819 5` UTR CG9967 - chr2L 2310951 intron CG9967 - chr2L 2311083 intron CG9967 - chr2L_4_2310001 chr2L_2310001 RAL-309 38 chr2L 2587818 2587848 chr2L 2587896 2587899 7 71 2.5 2.0 2.2 2.2 81 chr2L 2587818 intergenic not near genes chr2L 2587858 intergenic not near genes chr2L 2587899 intergenic not near genes chr2L_7_2585001 chr2L_2585001 RAL-309 39 chr2L 2618044 2618065 chr2L 2618114 2618142 7 77 2.5 2.0 2.2 2.2 98 chr2L 2618044 intergenic not near genes chr2L 2618093 intergenic not near genes chr2L 2618142 intergenic not near genes chr2L_7_2615001 chr2L_2615001 RAL-309 40 chr2L 2661195 2661232 chr2L 2663033 2663044 I-element 5 1829 1.0 1.0 1.0 2.5 1849 chr2L 2661195 intergenic not near genes chr2L 2662120 intergenic not near genes chr2L 2663044 intergenic not near genes chr2L_5_2660001 chr2L_2660001 RAL-309 41 chr2L 2713522 2713543 chr2L 2713618 2713622 7 93 4.5 5.0 4.8 1.2 100 chr2L 2713522 intron CG31690 + chr2L 2713572 intron CG31690 + chr2L 2713622 intron CG31690 + chr2L_7_2710001 chr2L_2710001 RAL-309 42 chr2L 2826546 2826575 chr2L 2826637 2826655 7 86 0.0 3.0 1.5 2.8 109 chr2L 2826546 intron Duox - chr2L 2826600 intron Duox - chr2L 2826655 intron Duox - chr2L_7_2825001 chr2L_2825001 RAL-309 43 chr2L 2937420 2937447 chr2L 2937497 2937522 7 73 0.5 1.5 1.0 3.5 102 chr2L 2937420 intron lilli + chr2L 2937471 intron lilli + chr2L 2937522 intron lilli + chr2L_7_2935001 chr2L_2935001 RAL-309 44 chr2L 3073032 3073063 chr2L 3078235 3078266 copia 8 5201 1.5 4.5 3.0 2.0 5234 chr2L 3073032 intron toc - chr2L 3075649 intron toc - chr2L 3078266 intron toc - chr2L_8_3075001 chr2L_3075001 RAL-309 45 chr2L 3108866 3108897 chr2L 3108942 3108974 6 75 1.0 2.5 1.8 2.1 108 chr2L 3108866 intron toc - chr2L 3108920 intron toc - chr2L 3108974 intron toc - chr2L_6_3105001 chr2L_3105001 RAL-309 46 chr2L 3147278 3147281 chr2L 3147355 3147357 4 77 5.5 5.0 5.2 0.6 79 chr2L 3147278 3` UTR Mad - chr2L 3147318 3` UTR Mad - chr2L 3147357 3` UTR Mad - chr2L_4_3145001 chr2L_3145001 RAL-309 47 chr2L 3147284 3147307 chr2L 3147354 3147381 11 75 2.5 5.0 3.8 2.3 97 chr2L 3147284 3` UTR Mad - chr2L 3147332 3` UTR Mad - chr2L 3147381 3` UTR Mad - chr2L_11_3145001 chr2L_3145001 RAL-309 48 chr2L 3192236 3192241 chr2L 3192320 3192329 4 98 1.5 3.5 2.5 1.1 93 chr2L 3192236 intron CG34393 - chr2L 3192282 intron CG34393 - chr2L 3192329 intron CG34393 - chr2L_4_3190001 chr2L_3190001 RAL-309 49 chr2L 3251497 3251517 chr2L 3259059 3259082 springer 7 7564 3.5 1.0 2.2 2.2 7585 chr2L 3251497 intergenic not near genes chr2L 3255290 intergenic not near genes chr2L 3259082 intergenic not near genes chr2L_7_3255001 chr2L_3255001 RAL-309 50 chr2L 3291241 3291267 chr2L 3291321 3291337 4 78 0.0 3.5 1.8 1.4 96 chr2L 3291241 intergenic CG9664 - chr2L 3291289 3` UTR CG9664 - chr2L 3291337 3` UTR CG9664 - chr2L_4_3290001 chr2L_3290001 RAL-309 51 chr2L 3325456 3325480 chr2L 3325547 3325571 9 90 1.0 3.0 2.0 3.0 115 chr2L 3325456 exon CG33281 + chr2L 3325514 intron CG33281 + chr2L 3325571 intron CG33281 + chr2L_9_3325001 chr2L_3325001 RAL-309 52 chr2L 3367013 3367039 chr2L 3367163 3367189 5 148 3.0 2.5 2.8 1.3 176 chr2L 3367013 intron CG34394 - chr2L 3367101 intron CG34394 - chr2L 3367189 intron CG34394 - chr2L_5_3365001 chr2L_3365001 RAL-309 53 chr2L 3395032 3395044 chr2L 3395114 3395126 5 82 5.0 3.0 4.0 1.0 94 chr2L 3395032 intergenic not near genes chr2L 3395079 intergenic not near genes chr2L 3395126 intergenic not near genes chr2L_5_3395001 chr2L_3395001 RAL-309 54 chr2L 3582882 3582910 chr2L 3582957 3582987 7 76 2.0 1.5 1.8 2.5 105 chr2L 3582882 intergenic not near genes chr2L 3582934 intergenic not near genes chr2L 3582987 intergenic not near genes chr2L_7_3580001 chr2L_3580001 RAL-309 55 chr2L 3707565 3707589 chr2L 3707649 3707673 7 84 2.5 4.0 3.2 1.7 108 chr2L 3707565 exon cutlet - chr2L 3707619 intron cutlet - chr2L 3707673 intron cutlet - chr2L_7_3705001 chr2L_3705001 RAL-309 56 chr2L 3880477 3880507 chr2L 3880976 3881006 13 496 2.0 2.5 2.2 4.1 529 chr2L 3880477 intron capu - chr2L 3880742 intron capu - chr2L 3881006 intron capu - chr2L_13_3880001 chr2L_3880001 RAL-309 57 chr2L 3891901 3891927 chr2L 3891979 3892012 6 84 1.5 3.0 2.2 1.9 111 chr2L 3891901 intron capu - chr2L 3891956 intron capu - chr2L 3892012 intron capu - chr2L_6_3890001 chr2L_3890001 RAL-309 58 chr2L 3908392 3908423 chr2L 3908650 3908680 6 258 0.5 3.0 1.8 2.1 288 chr2L 3908392 intron fred - chr2L 3908536 intron fred - chr2L 3908680 intron fred - chr2L_6_3905001 chr2L_3905001 RAL-309 59 chr2L 4155617 4155636 chr2L 4155858 4155877 4 238 0.0 0.5 0.2 3.3 260 chr2L 4155617 intergenic not near genes chr2L 4155747 intergenic not near genes chr2L 4155877 intergenic not near genes chr2L_4_4155001 chr2L_4155001 RAL-309 60 chr2L 4181292 4181300 chr2L 4183924 4183932 Burdock 4 2631 3.5 5.0 4.2 0.8 2640 chr2L 4181292 intergenic not near genes chr2L 4182612 intergenic not near genes chr2L 4183932 intergenic not near genes chr2L_4_4180001 chr2L_4180001 RAL-309 61 chr2L 4601703 4601735 chr2L 4609144 4609175 mdg1 6 7440 1.0 4.5 2.8 1.6 7472 chr2L 4601703 intron dp - chr2L 4605439 intron dp - chr2L 4609175 intron dp - chr2L_6_4605001 chr2L_4605001 RAL-309 62 chr2L 4918172 4918192 chr2L 4923244 4923259 jockey 4 5071 0.0 0.5 0.2 3.3 5087 chr2L 4918172 intron hoe1 - chr2L 4920716 intron hoe1 - chr2L 4923259 intron hoe1 - chr2L_4_4920001 chr2L_4920001 RAL-309 63 chr2L 4953512 4953537 chr2L 4953753 4953778 pogo 6 241 0.5 1.5 1.0 3.0 266 chr2L 4953512 intergenic Jon25Bii - chr2L 4953645 intergenic not near genes chr2L 4953778 intergenic Jon25Bi - chr2L_6_4950001 chr2L_4950001 RAL-309 64 chr2L 5040684 5040719 chr2L 5040780 5040785 9 92 1.0 1.5 1.2 4.1 101 chr2L 5040684 3` UTR,3` UTR,3` UTR CG14042 +,SP555 +,CG31650 - chr2L 5040734 3` UTR,3` UTR,3` UTR CG14042 +,SP555 +,CG31650 - chr2L 5040785 3` UTR,3` UTR,3` UTR CG14042 +,SP555 +,CG31650 - chr2L_9_5040001 chr2L_5040001 RAL-309 65 chr2L 5120974 5121004 chr2L 5121067 5121089 9 92 1.5 5.0 3.2 2.1 115 chr2L 5120974 intron Msp300 + chr2L 5121032 intron Msp300 + chr2L 5121089 intron Msp300 + chr2L_9_5120001 chr2L_5120001 RAL-309 66 chr2L 5147723 5147747 chr2L 5147955 5147959 4 224 2.5 2.5 2.5 1.1 236 chr2L 5147723 intron Msp300 + chr2L 5147841 intron Msp300 + chr2L 5147959 intron Msp300 + chr2L_4_5145001 chr2L_5145001 RAL-309 67 chr2L 5287422 5287453 chr2L 5287512 5287545 7 85 0.5 0.5 0.5 4.7 123 chr2L 5287422 intergenic CR44743 -,CR44742 + chr2L 5287484 3` UTR CR44743 - chr2L 5287545 3` UTR CR44743 - chr2L_7_5285001 chr2L_5285001 RAL-309 68 chr2L 5342763 5342784 chr2L 5345143 5345164 Doc 4 2380 3.0 0.0 1.5 1.6 2401 chr2L 5342763 intergenic not near genes chr2L 5343964 intergenic not near genes chr2L 5345164 intergenic not near genes chr2L_4_5340001 chr2L_5340001 RAL-309 69 chr2L 5516658 5516687 chr2L 5516737 5516765 5 79 0.0 0.5 0.2 4.2 107 chr2L 5516658 intergenic not near genes chr2L 5516712 intergenic not near genes chr2L 5516765 intergenic not near genes chr2L_5_5515001 chr2L_5515001 RAL-309 70 chr2L 5750748 5750768 chr2L 5750912 5750932 11 162 2.0 9.0 5.5 1.7 184 chr2L 5750748 intron CG11030 + chr2L 5750840 intron CG11030 + chr2L 5750932 intron CG11030 + chr2L_11_5750001 chr2L_5750001 RAL-309 71 chr2L 5814695 5814714 chr2L 5814778 5814793 7 80 1.0 2.0 1.5 2.8 98 chr2L 5814695 intergenic not near genes chr2L 5814744 intergenic not near genes chr2L 5814793 intergenic not near genes chr2L_7_5810001 chr2L_5810001 RAL-309 72 chr2L 5887608 5887625 chr2L 5887689 5887705 4 81 2.0 1.0 1.5 1.6 97 chr2L 5887608 3` UTR CR44577 - chr2L 5887656 3` UTR CR44577 - chr2L 5887705 3` UTR CR44577 - chr2L_4_5885001 chr2L_5885001 RAL-309 73 chr2L 5897592 5897617 chr2L 5897675 5897700 11 82 6.5 3.5 5.0 1.8 108 chr2L 5897592 intergenic not near genes chr2L 5897646 intergenic not near genes chr2L 5897700 intergenic not near genes chr2L_11_5895001 chr2L_5895001 RAL-309 74 chr2L 6021623 6021642 chr2L 6021699 6021718 4 76 3.0 0.5 1.8 1.4 95 chr2L 6021623 exon CG13996 + chr2L 6021670 exon CG13996 + chr2L 6021718 3` UTR CG13996 + chr2L_4_6020001 chr2L_6020001 RAL-309 75 chr2L 6136534 6136549 chr2L 6136651 6136665 4 116 4.0 0.5 2.2 1.2 131 chr2L 6136534 intergenic not near genes chr2L 6136600 intergenic not near genes chr2L 6136665 intergenic not near genes chr2L_4_6135001 chr2L_6135001 RAL-309 76 chr2L 6182087 6182111 chr2L 6182174 6182178 7 82 5.5 1.5 3.5 1.6 91 chr2L 6182087 intron CG34380 + chr2L 6182132 intron CG34380 + chr2L 6182178 intron CG34380 + chr2L_7_6180001 chr2L_6180001 RAL-309 77 chr2L 6351413 6351422 chr2L 6351551 6351572 4 140 0.5 0.5 0.5 2.7 159 chr2L 6351413 intergenic CG9498 - chr2L 6351492 intergenic CG9498 - chr2L 6351572 intergenic not near genes chr2L_4_6350001 chr2L_6350001 RAL-309 78 chr2L 6426855 6426886 chr2L 6445115 6445146 roo 6 18259 3.5 3.0 3.2 1.4 18291 chr2L 6426855 3` UTR CG9527 - chr2L 6436000 intron CG9527 - chr2L 6445146 exon CG9527 - chr2L_6_6435001 chr2L_6435001 RAL-309 79 chr2L 6544374 6544394 chr2L 6544465 6544483 7 91 0.0 0.5 0.2 5.8 109 chr2L 6544374 intron eya - chr2L 6544428 intron eya - chr2L 6544483 intron eya - chr2L_7_6540001 chr2L_6540001 RAL-309 80 chr2L 6598118 6598150 chr2L 6599075 6599085 8 953 3.0 3.0 3.0 2.0 967 chr2L 6598118 intron CG11319 - chr2L 6598602 intron CG11319 - chr2L 6599085 intron CG11319 - chr2L_8_6595001 chr2L_6595001 RAL-309 81 chr2L 6716611 6716614 chr2L 6716696 6716704 4 88 6.0 3.5 4.8 0.7 93 chr2L 6716611 intergenic AkhR - chr2L 6716658 intergenic AkhR - chr2L 6716704 intergenic not near genes chr2L_4_6715001 chr2L_6715001 RAL-309 82 chr2L 6716622 6716628 chr2L 6716691 6716718 6 83 4.0 3.0 3.5 1.3 96 chr2L 6716622 intergenic AkhR - chr2L 6716670 intergenic AkhR - chr2L 6716718 intergenic not near genes chr2L_6_6715001 chr2L_6715001 RAL-309 83 chr2L 6771987 6772022 chr2L 6772073 6772102 8 82 3.0 2.5 2.8 2.1 115 chr2L 6771987 intron CG11321 - chr2L 6772044 intron CG11321 - chr2L 6772102 intron CG11321 - chr2L_8_6770001 chr2L_6770001 RAL-309 84 chr2L 6795208 6795241 chr2L 6795289 6795322 12 77 2.0 3.0 2.5 3.4 114 chr2L 6795208 intron nrv2 - chr2L 6795265 intron nrv2 - chr2L 6795322 intron nrv2 - chr2L_12_6795001 chr2L_6795001 RAL-309 85 chr2L 6799536 6799561 chr2L 6799624 6799648 6 88 1.0 1.0 1.0 3.0 112 chr2L 6799536 5` UTR CR43610 + chr2L 6799592 5` UTR CR43610 + chr2L 6799648 intergenic CR43610 +,CG17376 - chr2L_6_6795001 chr2L_6795001 RAL-309 86 chr2L 6891453 6891470 chr2L 6891551 6891560 6 91 1.5 1.5 1.5 2.4 107 chr2L 6891453 intron Nlg2 + chr2L 6891506 intron Nlg2 + chr2L 6891560 intron Nlg2 + chr2L_6_6890001 chr2L_6890001 RAL-309 87 chr2L 7089637 7089639 chr2L 7089710 7089718 4 78 1.0 3.5 2.2 1.2 81 chr2L 7089637 intergenic not near genes chr2L 7089678 intergenic not near genes chr2L 7089718 intergenic not near genes chr2L_4_7085001 chr2L_7085001 RAL-309 88 chr2L 7167099 7167118 chr2L 7167436 7167456 7 337 3.5 5.0 4.2 1.3 357 chr2L 7167099 intergenic not near genes chr2L 7167278 intergenic not near genes chr2L 7167456 intergenic not near genes chr2L_7_7165001 chr2L_7165001 RAL-309 89 chr2L 7343323 7343354 chr2L 7350439 7350454 roo 5 7113 1.0 5.5 3.2 1.2 7131 chr2L 7343323 intron Wnt6 + chr2L 7346888 intron Wnt6 + chr2L 7350454 intron Wnt6 + chr2L_5_7345001 chr2L_7345001 RAL-309 90 chr2L 7377850 7377871 chr2L 7377928 7377935 6 77 4.5 3.5 4.0 1.2 85 chr2L 7377850 5` UTR ninaC + chr2L 7377892 intron ninaC + chr2L 7377935 intron ninaC + chr2L_6_7375001 chr2L_7375001 RAL-309 91 chr2L 7472963 7472994 chr2L 7474332 7474353 8 1359 12.5 20.0 16.2 0.5 1390 chr2L 7472963 3` UTR Ziz - chr2L 7473658 exon Ziz - chr2L 7474353 exon Ziz - chr2L_8_7470001 chr2L_7470001 RAL-309 92 chr2L 7502755 7502770 chr2L 7502816 7502844 6 68 3.5 5.5 4.5 1.1 89 chr2L 7502755 intron RapGAP1 - chr2L 7502800 intron RapGAP1 - chr2L 7502844 intron RapGAP1 - chr2L_6_7500001 chr2L_7500001 RAL-309 93 chr2L 7867568 7867596 chr2L 7867662 7867690 8 92 1.5 1.0 1.2 3.6 122 chr2L 7867568 intron Proc - chr2L 7867629 intron Proc - chr2L 7867690 intron Proc - chr2L_8_7865001 chr2L_7865001 RAL-309 94 chr2L 7977098 7977112 chr2L 7984074 7984077 297 4 6972 2.5 2.5 2.5 1.1 6979 chr2L 7977098 intron Snoo - chr2L 7980588 intron Snoo - chr2L 7984077 intron,5` UTR Snoo -,CG7231 + chr2L_4_7980001 chr2L_7980001 RAL-309 95 chr2L 8044101 8044128 chr2L 8044180 8044207 6 78 3.5 1.0 2.2 1.9 106 chr2L 8044101 intron CG7466 + chr2L 8044154 intron CG7466 + chr2L 8044207 intron CG7466 + chr2L_6_8040001 chr2L_8040001 RAL-309 96 chr2L 8167150 8167176 chr2L 8167241 8167265 4 90 2.0 3.5 2.8 1.1 115 chr2L 8167150 intron Piezo + chr2L 8167208 intron Piezo + chr2L 8167265 intron Piezo + chr2L_4_8165001 chr2L_8165001 RAL-309 97 chr2L 8171274 8171297 chr2L 8171350 8171364 5 76 0.0 2.0 1.0 2.5 90 chr2L 8171274 intron Piezo + chr2L 8171319 intron Piezo + chr2L 8171364 intron Piezo + chr2L_5_8170001 chr2L_8170001 RAL-309 98 chr2L 8184918 8184954 chr2L 8185009 8185045 8 90 2.0 1.5 1.8 2.9 127 chr2L 8184918 intron Piezo + chr2L 8184982 intron Piezo + chr2L 8185045 intron Piezo + chr2L_8_8180001 chr2L_8180001 RAL-309 99 chr2L 8349622 8349628 chr2L 8349721 8349733 4 101 3.0 4.0 3.5 0.9 111 chr2L 8349622 intron CG7778 + chr2L 8349678 intron CG7778 + chr2L 8349733 intron CG7778 + chr2L_4_8345001 chr2L_8345001 RAL-309 100 chr2L 8452442 8452449 chr2L 8461589 8461620 roo 4 9165 2.0 2.0 2.0 1.3 9178 chr2L 8452442 intron fu12 - chr2L 8457031 intron fu12 - chr2L 8461620 intron fu12 - chr2L_4_8455001 chr2L_8455001 RAL-309 101 chr2L 8603013 8603036 chr2L 8603174 8603198 8 161 1.5 2.0 1.8 2.9 185 chr2L 8603013 intron Sema-1a + chr2L 8603106 intron Sema-1a + chr2L 8603198 intron Sema-1a + chr2L_8_8600001 chr2L_8600001 RAL-309 102 chr2L 8723118 8723126 chr2L 8731493 8731503 Tirant 4 8376 4.5 2.5 3.5 0.9 8385 chr2L 8723118 intron raw - chr2L 8727310 intron raw - chr2L 8731503 intron raw - chr2L_4_8725001 chr2L_8725001 RAL-309 103 chr2L 8815744 8815767 chr2L 8815825 8815847 7 78 5.5 1.0 3.2 1.7 103 chr2L 8815744 intergenic not near genes chr2L 8815796 intergenic not near genes chr2L 8815847 intergenic not near genes chr2L_7_8815001 chr2L_8815001 RAL-309 104 chr2L 8992458 8992478 chr2L 8992536 8992556 4 74 0.0 1.5 0.8 2.2 98 chr2L 8992458 intron CG9555 + chr2L 8992507 intron CG9555 + chr2L 8992556 intron CG9555 + chr2L_4_8990001 chr2L_8990001 RAL-309 105 chr2L 8997266 8997272 chr2L 8997630 8997636 4 364 8.5 17.5 13.0 0.3 370 chr2L 8997266 5` UTR alien - chr2L 8997451 intergenic alien -,CG18661 + chr2L 8997636 5` UTR CG18661 + chr2L_4_8995001 chr2L_8995001 RAL-309 106 chr2L 9040888 9040908 chr2L 9040964 9040984 8 76 1.5 1.0 1.2 3.6 96 chr2L 9040888 intergenic not near genes chr2L 9040936 intergenic not near genes chr2L 9040984 intergenic not near genes chr2L_8_9040001 chr2L_9040001 RAL-309 107 chr2L 9048007 9048027 chr2L 9048089 9048109 6 80 2.5 1.0 1.8 2.1 102 chr2L 9048007 intergenic not near genes chr2L 9048058 intergenic not near genes chr2L 9048109 intergenic not near genes chr2L_6_9045001 chr2L_9045001 RAL-309 108 chr2L 9084338 9084340 chr2L 16217660 16217660 6 7133321 12.0 17.5 14.8 0.4 7133322 chr2L 9084338 intron Toll-4 + chr2L 12650999 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_6_12650001 chr2L_12650001 RAL-309 109 chr2L 9128573 9128605 chr2L 9128671 9128699 6 97 2.0 5.0 3.5 1.3 126 chr2L 9128573 intron CG32982 + chr2L 9128636 intron CG32982 + chr2L 9128699 intron CG32982 + chr2L_6_9125001 chr2L_9125001 RAL-309 110 chr2L 9202060 9202088 chr2L 9202136 9202145 9 70 1.5 8.5 5.0 1.5 85 chr2L 9202060 intron tai + chr2L 9202102 intron tai + chr2L 9202145 intron tai + chr2L_9_9200001 chr2L_9200001 RAL-309 111 chr2L 9235232 9235259 chr2L 9235337 9235365 12 104 2.0 2.0 2.0 4.0 133 chr2L 9235232 exon tai + chr2L 9235298 intron tai + chr2L 9235365 intron tai + chr2L_12_9235001 chr2L_9235001 RAL-309 112 chr2L 9283406 9283437 chr2L 9283487 9283517 9 79 1.0 1.0 1.0 4.5 111 chr2L 9283406 intron Ggamma30A + chr2L 9283462 intron Ggamma30A + chr2L 9283517 intron Ggamma30A + chr2L_9_9280001 chr2L_9280001 RAL-309 113 chr2L 9297381 9297389 chr2L 9297457 9297466 5 77 3.0 3.0 3.0 1.2 85 chr2L 9297381 3` UTR Ggamma30A + chr2L 9297424 3` UTR Ggamma30A + chr2L 9297466 3` UTR Ggamma30A + chr2L_5_9295001 chr2L_9295001 RAL-309 114 chr2L 9303466 9303493 chr2L 9303542 9303544 7 73 0.0 1.5 0.8 3.9 78 chr2L 9303466 intergenic not near genes chr2L 9303505 intergenic not near genes chr2L 9303544 intergenic not near genes chr2L_7_9300001 chr2L_9300001 RAL-309 115 chr2L 9317543 9317558 chr2L 9317819 9317835 6 277 0.0 2.5 1.2 2.7 292 chr2L 9317543 intergenic not near genes chr2L 9317689 intergenic not near genes chr2L 9317835 intergenic not near genes chr2L_6_9315001 chr2L_9315001 RAL-309 116 chr2L 9393506 9393522 chr2L 9396473 9396489 jockey 7 2967 2.5 6.5 4.5 1.3 2983 chr2L 9393506 intron Shawl - chr2L 9394998 intron Shawl - chr2L 9396489 intron Shawl - chr2L_7_9390001 chr2L_9390001 RAL-309 117 chr2L 9444385 9444403 chr2L 9444969 9444982 6 579 2.0 2.5 2.2 1.9 597 chr2L 9444385 intron numb + chr2L 9444684 intron numb + chr2L 9444982 intron numb + chr2L_6_9440001 chr2L_9440001 RAL-309 118 chr2L 9457085 9457099 chr2L 9457148 9457172 4 71 4.0 1.5 2.8 1.1 87 chr2L 9457085 intron numb + chr2L 9457128 intron numb + chr2L 9457172 intron numb + chr2L_4_9455001 chr2L_9455001 RAL-309 119 chr2L 9490523 9490543 chr2L 9490603 9490623 7 77 3.5 5.0 4.2 1.3 100 chr2L 9490523 intergenic not near genes chr2L 9490573 intergenic not near genes chr2L 9490623 intergenic not near genes chr2L_7_9490001 chr2L_9490001 RAL-309 120 chr2L 9506424 9506434 chr2L 9506574 9506584 4 150 4.0 3.0 3.5 0.9 160 chr2L 9506424 intron CG33298 + chr2L 9506504 intron CG33298 + chr2L 9506584 intron CG33298 + chr2L_4_9505001 chr2L_9505001 RAL-309 121 chr2L 9687116 9687130 chr2L 9687261 9687285 4 152 2.5 2.0 2.2 1.2 169 chr2L 9687116 intron Pka-C1 - chr2L 9687200 intron Pka-C1 - chr2L 9687285 intron Pka-C1 - chr2L_4_9685001 chr2L_9685001 RAL-309 122 chr2L 9734800 9734816 chr2L 9735124 9735127 5 320 0.0 2.0 1.0 2.5 327 chr2L 9734800 intron Nckx30C - chr2L 9734964 intron Nckx30C - chr2L 9735127 intron Nckx30C - chr2L_5_9730001 chr2L_9730001 RAL-309 123 chr2L 9829587 9829599 chr2L 9829789 9829793 5 200 4.0 5.5 4.8 0.9 206 chr2L 9829587 intron nAChRalpha6 - chr2L 9829690 intron nAChRalpha6 - chr2L 9829793 intron nAChRalpha6 - chr2L_5_9825001 chr2L_9825001 RAL-309 124 chr2L 9873134 9873151 chr2L 9873409 9873422 7 274 4.5 5.5 5.0 1.2 288 chr2L 9873134 intron nAChRalpha6 - chr2L 9873278 intron nAChRalpha6 - chr2L 9873422 intron nAChRalpha6 - chr2L_7_9870001 chr2L_9870001 RAL-309 125 chr2L 9892505 9892522 chr2L 9892577 9892598 8 75 2.5 1.5 2.0 2.7 93 chr2L 9892505 intron mtDNA-helicase - chr2L 9892552 intron mtDNA-helicase - chr2L 9892598 intron mtDNA-helicase - chr2L_8_9890001 chr2L_9890001 RAL-309 126 chr2L 9973730 9973756 chr2L 9980849 9980874 HMS-Beagle 7 7116 5.5 3.0 4.2 1.3 7144 chr2L 9973730 intergenic not near genes chr2L 9977302 intergenic not near genes chr2L 9980874 intergenic not near genes chr2L_7_9975001 chr2L_9975001 RAL-309 127 chr2L 10051725 10051747 chr2L 10051809 10051827 8 82 2.0 3.0 2.5 2.3 102 chr2L 10051725 5` UTR CR44874 + chr2L 10051776 5` UTR CR44874 + chr2L 10051827 5` UTR CR44874 + chr2L_8_10050001 chr2L_10050001 RAL-309 128 chr2L 10078128 10078158 chr2L 10078280 10078312 6 156 2.0 0.0 1.0 3.0 184 chr2L 10078128 intron CG44153 - chr2L 10078220 intron CG44153 - chr2L 10078312 intron CG44153 - chr2L_6_10075001 chr2L_10075001 RAL-309 129 chr2L 10096111 10096141 chr2L 10096189 10096195 5 66 2.0 1.5 1.8 1.8 84 chr2L 10096111 intron CG44153 - chr2L 10096153 intron CG44153 - chr2L 10096195 intron CG44153 - chr2L_5_10095001 chr2L_10095001 RAL-309 130 chr2L 10156322 10156355 chr2L 10163792 10163815 blood 10 7466 4.5 4.0 4.2 1.9 7493 chr2L 10156322 intron,3` UTR CG44153 -,CG4839 + chr2L 10160068 intron CG44153 - chr2L 10163815 intron CG44153 - chr2L_10_10160001 chr2L_10160001 RAL-309 131 chr2L 10260305 10260320 chr2L 10260387 10260402 4 79 5.5 2.5 4.0 0.8 97 chr2L 10260305 5` UTR Pten - chr2L 10260354 5` UTR Pten - chr2L 10260402 5` UTR Pten - chr2L_4_10260001 chr2L_10260001 RAL-309 132 chr2L 10260325 10260336 chr2L 10260383 10260417 6 69 2.5 2.5 2.5 1.7 92 chr2L 10260325 5` UTR Pten - chr2L 10260371 5` UTR Pten - chr2L 10260417 5` UTR Pten - chr2L_6_10260001 chr2L_10260001 RAL-309 133 chr2L 10704920 10704930 chr2L 10705015 10705025 4 95 2.5 0.0 1.2 1.8 105 chr2L 10704920 intron,3` UTR Lip2 -,CG6415 + chr2L 10704972 intron Lip2 - chr2L 10705025 intron Lip2 - chr2L_4_10700001 chr2L_10700001 RAL-309 134 chr2L 10746482 10746510 chr2L 10746694 10746723 4 212 1.0 2.0 1.5 1.6 241 chr2L 10746482 intron CG17124 - chr2L 10746602 intron CG17124 - chr2L 10746723 intron CG17124 - chr2L_4_10745001 chr2L_10745001 RAL-309 135 chr2L 10873054 10873073 chr2L 10873134 10873153 7 78 3.0 4.0 3.5 1.6 99 chr2L 10873054 intergenic not near genes chr2L 10873104 intergenic not near genes chr2L 10873153 intergenic not near genes chr2L_7_10870001 chr2L_10870001 RAL-309 136 chr2L 10914078 10914106 chr2L 10914210 10914238 5 132 1.5 4.0 2.8 1.3 160 chr2L 10914078 intergenic not near genes chr2L 10914158 intergenic not near genes chr2L 10914238 intergenic not near genes chr2L_5_10910001 chr2L_10910001 RAL-309 137 chr2L 10946957 10946973 chr2L 10956172 10956188 roo 7 9214 3.5 9.5 6.5 0.9 9231 chr2L 10946957 intron dpr2 - chr2L 10951572 intron dpr2 - chr2L 10956188 intron dpr2 - chr2L_7_10950001 chr2L_10950001 RAL-309 138 chr2L 11069462 11069492 chr2L 11069551 11069580 4 88 2.0 0.0 1.0 2.0 118 chr2L 11069462 intergenic not near genes chr2L 11069521 intergenic not near genes chr2L 11069580 intergenic not near genes chr2L_4_11065001 chr2L_11065001 RAL-309 139 chr2L 11255319 11255349 chr2L 11255407 11255419 11 84 1.0 2.5 1.8 3.9 100 chr2L 11255319 intron ab + chr2L 11255369 intron ab + chr2L 11255419 intron ab + chr2L_11_11255001 chr2L_11255001 RAL-309 140 chr2L 11404782 11404807 chr2L 11404858 11404883 6 76 0.0 0.5 0.2 5.0 101 chr2L 11404782 intergenic not near genes chr2L 11404832 intergenic not near genes chr2L 11404883 intergenic not near genes chr2L_6_11400001 chr2L_11400001 RAL-309 141 chr2L 11450144 11450153 chr2L 11450210 11450219 4 73 0.0 1.5 0.8 2.2 75 chr2L 11450144 intergenic not near genes chr2L 11450182 intergenic not near genes chr2L 11450219 intergenic not near genes chr2L_4_11450001 chr2L_11450001 RAL-309 142 chr2L 11521265 11521287 chr2L 11521340 11521352 4 73 1.5 1.5 1.5 1.6 87 chr2L 11521265 3` UTR,5` UTR CG14929 +,CG14930 - chr2L 11521308 3` UTR CG14929 + chr2L 11521352 3` UTR CG14929 + chr2L_4_11520001 chr2L_11520001 RAL-309 143 chr2L 11540585 11540615 chr2L 11547985 11547985 Tabor 6 7392 1.5 2.5 2.0 2.0 7400 chr2L 11540585 intergenic not near genes chr2L 11544285 intergenic not near genes chr2L 11547985 intergenic not near genes chr2L_6_11540001 chr2L_11540001 RAL-309 144 chr2L 11612665 11612687 chr2L 11612753 11612759 6 84 4.5 3.0 3.8 1.2 94 chr2L 11612665 intron kek2 + chr2L 11612712 intron kek2 + chr2L 11612759 intron kek2 + chr2L_6_11610001 chr2L_11610001 RAL-309 145 chr2L 11612688 11612695 chr2L 11612750 11612783 4 82 3.5 3.0 3.2 1.0 95 chr2L 11612688 intron kek2 + chr2L 11612736 intron kek2 + chr2L 11612783 intron kek2 + chr2L_4_11610001 chr2L_11610001 RAL-309 146 chr2L 11672136 11672166 chr2L 11672243 11672273 8 107 0.0 2.0 1.0 4.0 137 chr2L 11672136 intergenic not near genes chr2L 11672204 intergenic not near genes chr2L 11672273 intergenic not near genes chr2L_8_11670001 chr2L_11670001 RAL-309 147 chr2L 11688763 11688792 chr2L 11688835 11688866 8 72 1.5 1.0 1.2 3.6 103 chr2L 11688763 intergenic not near genes chr2L 11688814 intergenic not near genes chr2L 11688866 intergenic not near genes chr2L_8_11685001 chr2L_11685001 RAL-309 148 chr2L 11704634 11704661 chr2L 11704710 11704729 5 74 2.5 0.0 1.2 2.3 95 chr2L 11704634 intergenic not near genes chr2L 11704682 intergenic not near genes chr2L 11704729 intergenic not near genes chr2L_5_11700001 chr2L_11700001 RAL-309 149 chr2L 11713514 11713534 chr2L 11720982 11721002 blood 8 7467 4.5 4.0 4.2 1.5 7488 chr2L 11713514 intergenic not near genes chr2L 11717258 intergenic not near genes chr2L 11721002 intergenic CR44143 + chr2L_8_11715001 chr2L_11715001 RAL-309 150 chr2L 12349641 12349661 chr2L 12349735 12349754 4 94 2.5 2.5 2.5 1.1 113 chr2L 12349641 intron bru-2 + chr2L 12349698 intron bru-2 + chr2L 12349754 intron bru-2 + chr2L_4_12345001 chr2L_12345001 RAL-309 151 chr2L 12418426 12418437 chr2L 12418508 12418520 4 82 3.5 3.5 3.5 0.9 94 chr2L 12418426 intron vir-1 - chr2L 12418473 intron vir-1 - chr2L 12418520 intron vir-1 - chr2L_4_12415001 chr2L_12415001 RAL-309 152 chr2L 12529243 12529447 chr2L 12529376 12529511 11 84 0.0 0.5 0.2 9.2 268 chr2L 12529243 intron bun - chr2L 12529377 intron bun - chr2L 12529511 intron bun - chr2L_11_12525001 chr2L_12525001 RAL-309 153 chr2L 12647597 12647615 chr2L 12647713 12647730 4 116 2.5 3.5 3.0 1.0 133 chr2L 12647597 intergenic not near genes chr2L 12647664 intergenic not near genes chr2L 12647730 intergenic not near genes chr2L_4_12645001 chr2L_12645001 RAL-309 154 chr2L 12728922 12728950 chr2L 12729164 12729192 pogo 4 242 1.5 5.5 3.5 0.9 270 chr2L 12728922 intron MRP + chr2L 12729057 intron MRP + chr2L 12729192 exon MRP + chr2L_4_12725001 chr2L_12725001 RAL-309 155 chr2L 12731053 12731090 chr2L 12735820 12735857 F-element 4 4764 3.0 1.0 2.0 1.3 4804 chr2L 12731053 intron MRP + chr2L 12733455 intron MRP + chr2L 12735857 intron MRP + chr2L_4_12730001 chr2L_12730001 RAL-309 156 chr2L 12791607 12791631 chr2L 12795280 12795305 F-element 5 3672 0.5 1.0 0.8 2.8 3698 chr2L 12791607 intergenic not near genes chr2L 12793456 intergenic not near genes chr2L 12795305 intergenic not near genes chr2L_5_12790001 chr2L_12790001 RAL-309 157 chr2L 12861698 12861731 chr2L 12863165 12863198 hobo 12 1463 1.5 4.5 3.0 3.0 1500 chr2L 12861698 intergenic not near genes chr2L 12862448 intergenic not near genes chr2L 12863198 intergenic not near genes chr2L_12_12860001 chr2L_12860001 RAL-309 158 chr2L 12933848 12933868 chr2L 12941315 12941333 blood 5 7466 4.5 3.5 4.0 1.0 7485 chr2L 12933848 intergenic not near genes chr2L 12937590 intergenic not near genes chr2L 12941333 intergenic not near genes chr2L_5_12935001 chr2L_12935001 RAL-309 159 chr2L 13139457 13139486 chr2L 13139542 13139551 7 81 1.0 3.0 2.0 2.3 94 chr2L 13139457 intergenic not near genes chr2L 13139504 intergenic not near genes chr2L 13139551 intergenic not near genes chr2L_7_13135001 chr2L_13135001 RAL-309 160 chr2L 13152229 13152259 chr2L 13152307 13152337 10 77 5.0 1.0 3.0 2.5 108 chr2L 13152229 intergenic not near genes chr2L 13152283 intergenic not near genes chr2L 13152337 intergenic not near genes chr2L_10_13150001 chr2L_13150001 RAL-309 161 chr2L 13266388 13266412 chr2L 13266473 13266500 9 87 3.0 3.5 3.2 2.1 112 chr2L 13266388 intron CG44085 + chr2L 13266444 intron CG44085 + chr2L 13266500 intron CG44085 + chr2L_9_13265001 chr2L_13265001 RAL-309 162 chr2L 13405652 13405660 chr2L 13410448 13410457 Doc 4 4796 4.5 4.0 4.2 0.8 4805 chr2L 13405652 exon CG7110 + chr2L 13408054 intron CG7110 + chr2L 13410457 intron CG7110 + chr2L_4_13405001 chr2L_13405001 RAL-309 163 chr2L 13405667 13405681 chr2L 13410445 13410453 Doc 11 4788 2.5 4.0 3.2 2.6 4786 chr2L 13405667 exon CG7110 + chr2L 13408060 intron CG7110 + chr2L 13410453 intron CG7110 + chr2L_11_13405001 chr2L_13405001 RAL-309 164 chr2L 13567463 13567496 chr2L 13567540 13567573 9 77 1.5 1.5 1.5 3.6 110 chr2L 13567463 intron kuz + chr2L 13567518 intron kuz + chr2L 13567573 intron kuz + chr2L_9_13565001 chr2L_13565001 RAL-309 165 chr2L 13644525 13644538 chr2L 13644599 13644600 5 74 2.5 3.5 3.0 1.2 75 chr2L 13644525 intergenic not near genes chr2L 13644562 intergenic not near genes chr2L 13644600 intergenic not near genes chr2L_5_13640001 chr2L_13640001 RAL-309 166 chr2L 13693010 13693038 chr2L 13693086 13693113 10 75 1.5 6.5 4.0 2.0 103 chr2L 13693010 intron CG31814 - chr2L 13693062 intron CG31814 - chr2L 13693113 intron CG31814 - chr2L_10_13690001 chr2L_13690001 RAL-309 167 chr2L 13853083 13853116 chr2L 13862232 13862266 roo 9 9150 1.5 2.5 2.0 3.0 9183 chr2L 13853083 intron CenG1A + chr2L 13857674 intron CenG1A + chr2L 13862266 intron CenG1A + chr2L_9_13855001 chr2L_13855001 RAL-309 168 chr2L 13981527 13981550 chr2L 13981611 13981641 4 89 3.5 4.0 3.8 0.8 114 chr2L 13981527 exon NimC2 + chr2L 13981584 intron NimC2 + chr2L 13981641 intron NimC2 + chr2L_4_13980001 chr2L_13980001 RAL-309 169 chr2L 14474461 14474490 chr2L 14474538 14474549 8 74 2.5 5.5 4.0 1.6 88 chr2L 14474461 intergenic not near genes chr2L 14474505 intergenic not near genes chr2L 14474549 intergenic not near genes chr2L_8_14470001 chr2L_14470001 RAL-309 170 chr2L 14564217 14564231 chr2L 14564271 14564285 7 52 2.0 4.5 3.2 1.7 68 chr2L 14564217 intergenic CG3473 - chr2L 14564251 intergenic not near genes chr2L 14564285 intergenic not near genes chr2L_7_14560001 chr2L_14560001 RAL-309 171 chr2L 14588389 14588417 chr2L 14588543 14588571 8 151 1.5 1.5 1.5 3.2 182 chr2L 14588389 intergenic CG42680 - chr2L 14588480 intergenic CG42680 - chr2L 14588571 intergenic CG42680 - chr2L_8_14585001 chr2L_14585001 RAL-309 172 chr2L 14707217 14707237 chr2L 14707335 14707355 6 118 0.5 0.0 0.2 5.0 138 chr2L 14707217 intergenic not near genes chr2L 14707286 intergenic not near genes chr2L 14707355 intergenic not near genes chr2L_6_14705001 chr2L_14705001 RAL-309 173 chr2L 14715536 14715567 chr2L 14715626 14715657 7 90 2.5 1.0 1.8 2.5 121 chr2L 14715536 intergenic not near genes chr2L 14715596 intergenic not near genes chr2L 14715657 intergenic not near genes chr2L_7_14715001 chr2L_14715001 RAL-309 174 chr2L 14724494 14724530 chr2L 14724572 14724586 4 68 0.5 0.5 0.5 2.7 92 chr2L 14724494 intergenic CG42685 - chr2L 14724540 intergenic CG42685 - chr2L 14724586 intergenic CG42685 - chr2L_4_14720001 chr2L_14720001 RAL-309 175 chr2L 14747547 14747566 chr2L 14747619 14747653 9 82 1.0 4.0 2.5 2.6 106 chr2L 14747547 intergenic not near genes chr2L 14747600 intergenic not near genes chr2L 14747653 intergenic not near genes chr2L_9_14745001 chr2L_14745001 RAL-309 176 chr2L 14778821 14778836 chr2L 14779109 14779121 4 287 2.5 7.5 5.0 0.7 300 chr2L 14778821 intergenic not near genes chr2L 14778971 intergenic not near genes chr2L 14779121 intergenic not near genes chr2L_4_14775001 chr2L_14775001 RAL-309 177 chr2L 14803883 14803911 chr2L 14809086 14809114 copia 7 5199 2.0 4.0 3.0 1.8 5231 chr2L 14803883 intergenic not near genes chr2L 14806498 intergenic not near genes chr2L 14809114 intergenic not near genes chr2L_7_14805001 chr2L_14805001 RAL-309 178 chr2L 14889954 14889988 chr2L 14890379 14890412 jockey 7 425 1.5 4.5 3.0 1.8 458 chr2L 14889954 intergenic not near genes chr2L 14890183 intergenic not near genes chr2L 14890412 intergenic not near genes chr2L_7_14890001 chr2L_14890001 RAL-309 179 chr2L 15226388 15226393 chr2L 15226446 15226469 4 67 1.5 1.0 1.2 1.8 81 chr2L 15226388 intergenic not near genes chr2L 15226428 intergenic not near genes chr2L 15226469 intergenic not near genes chr2L_4_15225001 chr2L_15225001 RAL-309 180 chr2L 15375823 15375841 chr2L 15375935 15375953 4 112 0.5 1.0 0.8 2.2 130 chr2L 15375823 intergenic not near genes chr2L 15375888 intergenic not near genes chr2L 15375953 intergenic not near genes chr2L_4_15375001 chr2L_15375001 RAL-309 181 chr2L 15823351 15823365 chr2L 15823427 15823438 5 75 1.0 1.0 1.0 2.5 87 chr2L 15823351 intergenic CR44601 - chr2L 15823394 intergenic CR44601 - chr2L 15823438 intergenic CR44601 - chr2L_5_15820001 chr2L_15820001 RAL-309 182 chr2L 15887719 15887739 chr2L 15887849 15887864 4 130 3.5 3.5 3.5 0.9 145 chr2L 15887719 intergenic not near genes chr2L 15887792 intergenic not near genes chr2L 15887864 intergenic not near genes chr2L_4_15885001 chr2L_15885001 RAL-309 183 chr2L 15904585 15904607 chr2L 15904657 15904688 4 75 1.0 1.5 1.2 1.8 103 chr2L 15904585 intergenic not near genes chr2L 15904636 intergenic beat-Ib - chr2L 15904688 intergenic beat-Ib - chr2L_4_15900001 chr2L_15900001 RAL-309 184 chr2L 15906185 15906214 chr2L 15906269 15906302 6 86 3.0 1.0 2.0 2.0 117 chr2L 15906185 intron beat-Ib - chr2L 15906244 intron beat-Ib - chr2L 15906302 intron beat-Ib - chr2L_6_15905001 chr2L_15905001 RAL-309 185 chr2L 16058139 16058151 chr2L 16058279 16058292 5 141 1.0 2.0 1.5 2.0 153 chr2L 16058139 intron beat-Ia + chr2L 16058216 intron beat-Ia + chr2L 16058292 intron beat-Ia + chr2L_5_16055001 chr2L_16055001 RAL-309 186 chr2L 16153745 16153760 chr2L 16160813 16160828 297 5 7068 0.5 2.0 1.2 2.3 7083 chr2L 16153745 intergenic not near genes chr2L 16157286 intergenic not near genes chr2L 16160828 intergenic not near genes chr2L_5_16155001 chr2L_16155001 RAL-309 187 chr2L 16600242 16600260 chr2L 16600349 16600371 6 116 3.0 2.5 2.8 1.6 129 chr2L 16600242 intron CG42389 + chr2L 16600306 intron CG42389 + chr2L 16600371 intron CG42389 + chr2L_6_16600001 chr2L_16600001 RAL-309 188 chr2L 16712718 16712728 chr2L 16712926 16712936 8 208 2.5 3.5 3.0 2.0 218 chr2L 16712718 intron CG31808 - chr2L 16712827 intron CG31808 - chr2L 16712936 intron CG31808 - chr2L_8_16710001 chr2L_16710001 RAL-309 189 chr2L 17053210 17053230 chr2L 17053296 17053320 5 89 1.5 4.0 2.8 1.3 110 chr2L 17053210 intergenic not near genes chr2L 17053265 intergenic not near genes chr2L 17053320 intergenic not near genes chr2L_5_17050001 chr2L_17050001 RAL-309 190 chr2L 17238831 17238860 chr2L 17238916 17238924 4 80 2.0 1.5 1.8 1.4 93 chr2L 17238831 intron beat-IIIc - chr2L 17238878 intron beat-IIIc - chr2L 17238924 intron beat-IIIc - chr2L_4_17235001 chr2L_17235001 RAL-309 191 chr2L 17240572 17240588 chr2L 17240659 17240675 4 87 2.5 2.5 2.5 1.1 103 chr2L 17240572 intron beat-IIIc - chr2L 17240624 intron beat-IIIc - chr2L 17240675 intron beat-IIIc - chr2L_4_17240001 chr2L_17240001 RAL-309 192 chr2L 17273195 17273224 chr2L 17277972 17277995 F-element 9 4777 2.0 3.0 2.5 2.6 4800 chr2L 17273195 intergenic not near genes chr2L 17275595 intergenic not near genes chr2L 17277995 intergenic not near genes chr2L_9_17275001 chr2L_17275001 RAL-309 193 chr2L 17360025 17360043 chr2L 17360203 17360221 4 178 1.0 0.0 0.5 2.7 196 chr2L 17360025 intergenic not near genes chr2L 17360123 intergenic not near genes chr2L 17360221 intergenic not near genes chr2L_4_17360001 chr2L_17360001 RAL-309 194 chr2L 17380459 17380476 chr2L 17380725 17380744 5 268 2.0 3.0 2.5 1.4 285 chr2L 17380459 intron Lrch - chr2L 17380602 intron Lrch - chr2L 17380744 intron Lrch - chr2L_5_17380001 chr2L_17380001 RAL-309 195 chr2L 17425172 17425201 chr2L 17425518 17425534 5 342 4.0 2.0 3.0 1.2 362 chr2L 17425172 intron Dif - chr2L 17425353 intron Dif - chr2L 17425534 intron Dif - chr2L_5_17425001 chr2L_17425001 RAL-309 196 chr2L 17444192 17444206 chr2L 17444304 17444318 4 108 2.5 0.0 1.2 1.8 126 chr2L 17444192 intron dl - chr2L 17444255 intron dl - chr2L 17444318 intron dl - chr2L_4_17440001 chr2L_17440001 RAL-309 197 chr2L 17662764 17662777 chr2L 17662834 17662855 4 74 1.5 3.5 2.5 1.1 91 chr2L 17662764 intron CadN - chr2L 17662810 intron CadN - chr2L 17662855 intron CadN - chr2L_4_17660001 chr2L_17660001 RAL-309 198 chr2L 17879997 17880030 chr2L 17880084 17880116 7 85 2.0 0.5 1.2 3.2 119 chr2L 17879997 intergenic not near genes chr2L 17880056 intergenic not near genes chr2L 17880116 intergenic not near genes chr2L_7_17880001 chr2L_17880001 RAL-309 199 chr2L 17951950 17951979 chr2L 17953416 17953436 hobo 5 1465 2.5 0.0 1.2 2.3 1486 chr2L 17951950 intergenic CR44398 -,CR44397 - chr2L 17952693 intergenic not near genes chr2L 17953436 intergenic not near genes chr2L_5_17950001 chr2L_17950001 RAL-309 200 chr2L 18002105 18002135 chr2L 18002268 18002284 7 158 2.5 0.5 1.5 2.8 179 chr2L 18002105 intergenic not near genes chr2L 18002194 intergenic not near genes chr2L 18002284 intergenic not near genes chr2L_7_18000001 chr2L_18000001 RAL-309 201 chr2L 18078300 18078304 chr2L 18078370 18078390 5 80 2.5 3.5 3.0 1.2 90 chr2L 18078300 5` UTR Arr1 + chr2L 18078345 5` UTR Arr1 + chr2L 18078390 exon Arr1 + chr2L_5_18075001 chr2L_18075001 RAL-309 202 chr2L 18079828 18079840 chr2L 18079914 18079925 4 85 2.5 4.0 3.2 1.0 97 chr2L 18079828 intron Arr1 + chr2L 18079876 intron Arr1 + chr2L 18079925 intron Arr1 + chr2L_4_18075001 chr2L_18075001 RAL-309 203 chr2L 18107782 18107807 chr2L 18107866 18107885 6 83 4.5 3.0 3.8 1.2 103 chr2L 18107782 intergenic not near genes chr2L 18107834 intergenic not near genes chr2L 18107885 intergenic not near genes chr2L_6_18105001 chr2L_18105001 RAL-309 204 chr2L 18274045 18274065 chr2L 18274131 18274151 4 84 1.5 2.0 1.8 1.4 106 chr2L 18274045 intron CG42750 - chr2L 18274098 intron CG42750 - chr2L 18274151 intron CG42750 - chr2L_4_18270001 chr2L_18270001 RAL-309 205 chr2L 18286413 18286449 chr2L 18286506 18286542 5 93 1.5 0.0 0.8 2.8 129 chr2L 18286413 intergenic not near genes chr2L 18286478 intergenic not near genes chr2L 18286542 intergenic not near genes chr2L_5_18285001 chr2L_18285001 RAL-309 206 chr2L 18291528 18291558 chr2L 18291625 18291656 4 98 0.5 0.0 0.2 3.3 128 chr2L 18291528 intergenic CG43362 -,CR44693 +,CR44696 - chr2L 18291592 intergenic CR44693 +,CG43362 -,CR44696 - chr2L 18291656 intergenic CR44693 +,CG43362 -,CR44696 - chr2L_4_18290001 chr2L_18290001 RAL-309 207 chr2L 18394765 18394799 chr2L 18394952 18394982 4 187 0.0 1.5 0.8 2.2 217 chr2L 18394765 intergenic not near genes chr2L 18394874 intergenic not near genes chr2L 18394982 intergenic not near genes chr2L_4_18390001 chr2L_18390001 RAL-309 208 chr2L 18538568 18538599 chr2L 18538650 18538680 5 81 0.0 0.5 0.2 4.2 112 chr2L 18538568 intron Pde11 - chr2L 18538624 intron Pde11 - chr2L 18538680 intron Pde11 - chr2L_5_18535001 chr2L_18535001 RAL-309 209 chr2L 18811409 18811437 chr2L 18811491 18811519 4 82 0.5 0.0 0.2 3.3 110 chr2L 18811409 intergenic CG10570 -,CG42502 - chr2L 18811464 intergenic CG10570 -,CG42502 - chr2L 18811519 intergenic not near genes chr2L_4_18810001 chr2L_18810001 RAL-309 210 chr2L 18812556 18812589 chr2L 18812819 18812851 10 255 2.0 2.0 2.0 3.3 295 chr2L 18812556 intergenic CG17325 +,CG42305 + chr2L 18812704 5` UTR,5` UTR CG17325 +,CG42305 + chr2L 18812851 5` UTR,5` UTR CG17325 +,CG42305 + chr2L_10_18810001 chr2L_18810001 RAL-309 211 chr2L 19035915 19035949 chr2L 19036004 19036004 6 74 3.5 1.5 2.5 1.7 89 chr2L 19035915 intron mib2 + chr2L 19035960 intron mib2 + chr2L 19036004 intron mib2 + chr2L_6_19035001 chr2L_19035001 RAL-309 212 chr2L 19163243 19163271 chr2L 19163328 19163359 7 87 3.5 3.5 3.5 1.6 116 chr2L 19163243 intron brat + chr2L 19163301 intron brat + chr2L 19163359 intron brat + chr2L_7_19160001 chr2L_19160001 RAL-309 213 chr2L 19199674 19199693 chr2L 19199751 19199753 5 73 3.0 3.5 3.2 1.2 79 chr2L 19199674 intron drl + chr2L 19199714 intron drl + chr2L 19199753 intron drl + chr2L_5_19195001 chr2L_19195001 RAL-309 214 chr2L 19199695 19199705 chr2L 19199745 19199782 5 69 2.0 3.0 2.5 1.4 87 chr2L 19199695 intron drl + chr2L 19199738 intron drl + chr2L 19199782 intron drl + chr2L_5_19195001 chr2L_19195001 RAL-309 215 chr2L 19209617 19209632 chr2L 19209702 19209713 4 84 2.5 0.5 1.5 1.6 96 chr2L 19209617 intergenic not near genes chr2L 19209665 intergenic not near genes chr2L 19209713 intergenic not near genes chr2L_4_19205001 chr2L_19205001 RAL-309 216 chr2L 19316198 19316217 chr2L 19316275 19316294 6 76 1.0 3.5 2.2 1.9 96 chr2L 19316198 intergenic not near genes chr2L 19316246 intergenic not near genes chr2L 19316294 intergenic not near genes chr2L_6_19315001 chr2L_19315001 RAL-309 217 chr2L 19357549 19357567 chr2L 19357636 19357657 4 86 3.5 3.5 3.5 0.9 108 chr2L 19357549 intron dnt - chr2L 19357603 intron dnt - chr2L 19357657 intron dnt - chr2L_4_19355001 chr2L_19355001 RAL-309 218 chr2L 19378340 19378372 chr2L 19378421 19378431 9 76 3.0 3.0 3.0 2.2 91 chr2L 19378340 intergenic not near genes chr2L 19378386 intergenic not near genes chr2L 19378431 intergenic not near genes chr2L_9_19375001 chr2L_19375001 RAL-309 219 chr2L 19380512 19380529 chr2L 19380592 19380609 8 80 3.0 3.0 3.0 2.0 97 chr2L 19380512 intergenic CG17350 + chr2L 19380560 intergenic CG17350 + chr2L 19380609 intergenic CG17350 + chr2L_8_19380001 chr2L_19380001 RAL-309 220 chr2L 19601576 19601597 chr2L 19601652 19601674 9 75 1.0 2.5 1.8 3.2 98 chr2L 19601576 intron,intron Lar +,CR44978 - chr2L 19601625 intron,intron Lar +,CR44978 - chr2L 19601674 intron,intron Lar +,CR44978 - chr2L_9_19600001 chr2L_19600001 RAL-309 221 chr2L 19620096 19620132 chr2L 19621085 19621114 jockey 12 984 2.0 5.5 3.8 2.5 1018 chr2L 19620096 intron Lar + chr2L 19620605 intron Lar + chr2L 19621114 intron Lar + chr2L_12_19620001 chr2L_19620001 RAL-309 222 chr2L 19638540 19638571 chr2L 19638623 19638659 4 87 1.5 2.0 1.8 1.4 119 chr2L 19638540 intron Lar + chr2L 19638600 intron Lar + chr2L 19638659 intron Lar + chr2L_4_19635001 chr2L_19635001 RAL-309 223 chr2L 19703538 19703569 chr2L 19712674 19712688 roo 13 9134 2.0 2.0 2.0 4.3 9150 chr2L 19703538 intron Lar + chr2L 19708113 intron Lar + chr2L 19712688 intron Lar + chr2L_13_19705001 chr2L_19705001 RAL-309 224 chr2L 19713586 19713600 chr2L 19713699 19713733 5 122 3.0 1.5 2.2 1.6 147 chr2L 19713586 intron Lar + chr2L 19713660 intron Lar + chr2L 19713733 intron Lar + chr2L_5_19710001 chr2L_19710001 RAL-309 225 chr2L 19737356 19737389 chr2L 19740821 19740841 1360 8 3460 2.5 4.5 3.5 1.8 3485 chr2L 19737356 intergenic Nf-YB + chr2L 19739098 intergenic not near genes chr2L 19740841 intergenic not near genes chr2L_8_19735001 chr2L_19735001 RAL-309 226 chr2L 19762831 19762839 chr2L 19763055 19763081 pogo 5 238 1.5 2.0 1.8 1.8 250 chr2L 19762831 intron fbp - chr2L 19762956 intron fbp - chr2L 19763081 intron fbp - chr2L_5_19760001 chr2L_19760001 RAL-309 227 chr2L 19837282 19837310 chr2L 19837362 19837389 11 77 2.5 2.5 2.5 3.1 107 chr2L 19837282 intron sick + chr2L 19837336 intron sick + chr2L 19837389 intron sick + chr2L_11_19835001 chr2L_19835001 RAL-309 228 chr2L 19901491 19901516 chr2L 19901594 19901618 5 101 3.5 2.0 2.8 1.3 127 chr2L 19901491 intron sick + chr2L 19901554 intron sick + chr2L 19901618 intron sick + chr2L_5_19900001 chr2L_19900001 RAL-309 229 chr2L 19986899 19986902 chr2L 19987131 19987156 11 234 29.5 24.0 26.8 0.4 257 chr2L 19986899 intron CG43861 - chr2L 19987028 intron CG43861 - chr2L 19987156 intron CG43861 - chr2L_11_19985001 chr2L_19985001 RAL-309 230 chr2L 19994398 19994684 chr2L 19994509 19994738 10 78 1.0 5.5 3.2 2.4 340 chr2L 19994398 intron CG43861 - chr2L 19994568 intron CG43861 - chr2L 19994738 intron CG43861 - chr2L_10_19990001 chr2L_19990001 RAL-309 231 chr2L 20041436 20041462 chr2L 20041520 20041547 9 83 3.0 3.5 3.2 2.1 111 chr2L 20041436 intron sNPF + chr2L 20041492 intron sNPF + chr2L 20041547 intron sNPF + chr2L_9_20040001 chr2L_20040001 RAL-309 232 chr2L 20069529 20069559 chr2L 20069606 20069635 6 78 2.5 3.0 2.8 1.6 106 chr2L 20069529 intron bwa + chr2L 20069582 intron bwa + chr2L 20069635 intron bwa + chr2L_6_20065001 chr2L_20065001 RAL-309 233 chr2L 20079517 20079540 chr2L 20079638 20079661 5 120 1.5 0.0 0.8 2.8 144 chr2L 20079517 intron,intron neb +,fok - chr2L 20079589 intron,intron neb +,fok - chr2L 20079661 intron,intron neb +,fok - chr2L_5_20075001 chr2L_20075001 RAL-309 234 chr2L 20272124 20272145 chr2L 20282834 20282854 copia 5 10710 3.5 2.0 2.8 1.3 10730 chr2L 20272124 intergenic not near genes chr2L 20277489 intergenic not near genes chr2L 20282854 intergenic not near genes chr2L_5_20275001 chr2L_20275001 RAL-309 235 chr2L 20322636 20322653 chr2L 20322718 20322736 5 83 3.0 1.0 2.0 1.7 100 chr2L 20322636 intron spir + chr2L 20322686 intron spir + chr2L 20322736 intron spir + chr2L_5_20320001 chr2L_20320001 RAL-309 236 chr2L 20367605 20367630 chr2L 20367703 20367728 4 96 5.5 3.5 4.5 0.7 123 chr2L 20367605 intergenic not near genes chr2L 20367666 intergenic not near genes chr2L 20367728 intergenic not near genes chr2L_4_20365001 chr2L_20365001 RAL-309 237 chr2L 20568660 20568683 chr2L 20569050 20569073 X-element 5 387 2.5 1.0 1.8 1.8 413 chr2L 20568660 intron CR45347 + chr2L 20568866 intron CR45347 + chr2L 20569073 intron CR45347 + chr2L_5_20565001 chr2L_20565001 RAL-309 238 chr2L 20576222 20576248 chr2L 20583688 20583716 blood 6 7467 8.0 2.5 5.2 1.0 7494 chr2L 20576222 intergenic not near genes chr2L 20579969 intergenic not near genes chr2L 20583716 3` UTR CR44909 - chr2L_6_20575001 chr2L_20575001 RAL-309 239 chr2L 20840025 20840059 chr2L 20840237 20840271 8 204 2.0 2.5 2.2 2.5 246 chr2L 20840025 intergenic not near genes chr2L 20840148 intergenic not near genes chr2L 20840271 intergenic CG31676 + chr2L_8_20840001 chr2L_20840001 RAL-309 240 chr2L 20901470 20901488 chr2L 20902633 20902651 1360 5 1163 3.5 3.5 3.5 1.1 1181 chr2L 20901470 intron,intron CG43739 -,sky - chr2L 20902060 intron,intron CG43739 -,sky - chr2L 20902651 intron,intron CG43739 -,sky - chr2L_5_20900001 chr2L_20900001 RAL-309 241 chr2L 20934605 20934635 chr2L 20934799 20934830 4 189 0.0 1.0 0.5 2.7 225 chr2L 20934605 intergenic CG9270 - chr2L 20934718 intergenic not near genes chr2L 20934830 intergenic not near genes chr2L_4_20930001 chr2L_20930001 RAL-309 242 chr2L 21020289 21020309 chr2L 21023961 21023984 NOF 9 3673 3.5 3.5 3.5 2.0 3695 chr2L 21020289 intron CG42238 - chr2L 21022136 intron CG42238 - chr2L 21023984 intron CG42238 - chr2L_9_21020001 chr2L_21020001 RAL-309 243 chr2L 21034144 21034174 chr2L 21034224 21034253 8 77 3.5 5.0 4.2 1.5 109 chr2L 21034144 intron CG42238 - chr2L 21034198 intron CG42238 - chr2L 21034253 intron CG42238 - chr2L_8_21030001 chr2L_21030001 RAL-309 244 chr2L 21286608 21286619 chr2L 21286686 21286697 5 78 1.5 2.5 2.0 1.7 89 chr2L 21286608 exon Mio - chr2L 21286652 intron Mio - chr2L 21286697 intron Mio - chr2L_5_21285001 chr2L_21285001 RAL-309 245 chr2L 21838292 21838313 chr2L 21838482 21838500 4 189 5.0 1.5 3.2 1.0 208 chr2L 21838292 intergenic not near genes chr2L 21838396 intergenic not near genes chr2L 21838500 intergenic not near genes chr2L_4_21835001 chr2L_21835001 RAL-309 246 chr2L 21981683 21981713 chr2L 21990848 21990878 roo 8 9164 2.0 2.0 2.0 2.7 9195 chr2L 21981683 exon CG2528 - chr2L 21986280 intron CG2528 - chr2L 21990878 exon CG2528 - chr2L_8_21985001 chr2L_21985001 RAL-309 247 chr2L 22005769 22005795 chr2L 22005859 22005868 4 86 2.5 1.0 1.8 1.4 99 chr2L 22005769 intergenic not near genes chr2L 22005818 intergenic not near genes chr2L 22005868 intergenic not near genes chr2L_4_22005001 chr2L_22005001 RAL-309 248 chr2L 22212138 22212163 chr2L 22212685 22212709 4 547 0.5 1.0 0.8 2.2 571 chr2L 22212138 intron Ir40a - chr2L 22212424 intron Ir40a - chr2L 22212709 intron Ir40a - chr2L_4_22210001 chr2L_22210001 RAL-309 249 chr2L 22239425 22239459 chr2L 22239506 22239533 16 76 2.0 0.5 1.2 7.3 108 chr2L 22239425 intron CR43765 - chr2L 22239479 3` UTR CR43765 - chr2L 22239533 3` UTR CR43765 - chr2L_16_22235001 chr2L_22235001 RAL-309 250 chr2L 22258610 22258643 chr2L 22260734 22260767 G6 4 2122 2.0 1.5 1.8 1.4 2157 chr2L 22258610 intergenic Tif-IA + chr2L 22259688 intergenic not near genes chr2L 22260767 intergenic not near genes chr2L_4_22255001 chr2L_22255001 RAL-309 251 chr2L 22545980 22546008 chr2L 22546075 22546104 11 93 5.5 4.5 5.0 1.8 124 chr2L 22545980 intron CG17490 + chr2L 22546042 intron CG17490 + chr2L 22546104 intron CG17490 + chr2L_11_22545001 chr2L_22545001 RAL-309 252 chr2L 22676138 22676153 chr2L 22676376 22676389 4 237 0.5 0.0 0.2 3.3 251 chr2L 22676138 intron CG40006 - chr2L 22676264 intron CG40006 - chr2L 22676389 intron CG40006 - chr2L_4_22675001 chr2L_22675001 RAL-309 253 chr2L 22679802 22679818 chr2L 22684573 22684587 F-element 6 4770 0.5 1.0 0.8 3.3 4785 chr2L 22679802 intron CG40006 - chr2L 22682194 intron CG40006 - chr2L 22684587 intron CG40006 - chr2L_6_22680001 chr2L_22680001 RAL-309 254 chr2L 22693922 22693950 chr2L 22694008 22694036 6 82 2.5 4.5 3.5 1.3 114 chr2L 22693922 intron CG40006 - chr2L 22693979 intron CG40006 - chr2L 22694036 intron CG40006 - chr2L_6_22690001 chr2L_22690001 RAL-309 255 chr2R 529337 529357 chr2R 537959 537982 Max-element 7 8620 0.5 2.0 1.2 3.2 8645 chr2R 529337 intron CG40378 + chr2R 533660 intron CG40378 + chr2R 537982 intron CG40378 + chr2R_7_530001 chr2R_530001 RAL-309 256 chr2R 1082377 1082380 chr2R 1087153 1087156 Doc 4 4776 4.5 8.0 6.2 0.6 4779 chr2R 1082377 intron rl + chr2R 1084766 intron rl + chr2R 1087156 intron rl + chr2R_4_1080001 chr2R_1080001 RAL-309 257 chr2R 1370179 1370187 chr2R 1370251 1370275 4 84 0.5 1.0 0.8 2.2 96 chr2R 1370179 intron,3` UTR l(2)41Ab +,CR44043 - chr2R 1370227 intron,3` UTR l(2)41Ab +,CR44043 - chr2R 1370275 intron,3` UTR l(2)41Ab +,CR44043 - chr2R_4_1370001 chr2R_1370001 RAL-309 258 chr2R 2498987 2499016 chr2R 2508134 2508144 roo 5 9139 2.0 2.5 2.2 1.6 9157 chr2R 2498987 intron MFS17 - chr2R 2503566 intron MFS17 - chr2R 2508144 intron MFS17 - chr2R_5_2500001 chr2R_2500001 RAL-309 259 chr2R 3927694 3927717 chr2R 3927789 3927814 12 95 0.5 1.5 1.0 6.0 120 chr2R 3927694 intron uex - chr2R 3927754 intron uex - chr2R 3927814 intron uex - chr2R_12_3925001 chr2R_3925001 RAL-309 260 chr2R 4312960 4312986 chr2R 4313044 4313070 5 84 1.0 3.0 2.0 1.7 110 chr2R 4312960 intergenic not near genes chr2R 4313015 intergenic not near genes chr2R 4313070 intergenic not near genes chr2R_5_4310001 chr2R_4310001 RAL-309 261 chr2R 4329560 4329573 chr2R 4329646 4329658 6 85 6.0 4.5 5.2 1.0 98 chr2R 4329560 intron Gprk1 - chr2R 4329609 intron Gprk1 - chr2R 4329658 intron Gprk1 - chr2R_6_4325001 chr2R_4325001 RAL-309 262 chr2R 4508164 4508168 chr2R 4508245 4508249 4 81 4.5 3.5 4.0 0.8 85 chr2R 4508164 intron CR44100 + chr2R 4508206 intron CR44100 + chr2R 4508249 5` UTR CR44100 + chr2R_4_4505001 chr2R_4505001 RAL-309 263 chr2R 4508169 4508193 chr2R 4508242 4508274 8 76 2.0 3.5 2.8 2.1 105 chr2R 4508169 intron CR44100 + chr2R 4508222 5` UTR CR44100 + chr2R 4508274 5` UTR CR44100 + chr2R_8_4505001 chr2R_4505001 RAL-309 264 chr2R 4783422 4783453 chr2R 4783499 4783529 5 75 4.0 5.0 4.5 0.9 107 chr2R 4783422 intergenic not near genes chr2R 4783476 intergenic not near genes chr2R 4783529 intergenic not near genes chr2R_5_4780001 chr2R_4780001 RAL-309 265 chr2R 4838875 4838902 chr2R 4840398 4840406 transib2 4 1518 1.0 2.0 1.5 1.6 1531 chr2R 4838875 intergenic not near genes chr2R 4839640 intergenic not near genes chr2R 4840406 intergenic not near genes chr2R_4_4835001 chr2R_4835001 RAL-309 266 chr2R 4942079 4942087 chr2R 4942176 4942193 4 108 0.5 0.0 0.2 3.3 114 chr2R 4942079 intron Ir41a + chr2R 4942136 intron Ir41a + chr2R 4942193 intron Ir41a + chr2R_4_4940001 chr2R_4940001 RAL-309 267 chr2R 4957018 4957037 chr2R 4957121 4957140 6 103 2.0 0.5 1.2 2.7 122 chr2R 4957018 intron Ir41a + chr2R 4957079 intron Ir41a + chr2R 4957140 intron Ir41a + chr2R_6_4955001 chr2R_4955001 RAL-309 268 chr2R 5125259 5125276 chr2R 5125577 5125583 5 316 0.0 1.5 0.8 2.8 324 chr2R 5125259 intron gus - chr2R 5125421 intron gus - chr2R 5125583 intron gus - chr2R_5_5125001 chr2R_5125001 RAL-309 269 chr2R 5266117 5266154 chr2R 5266200 5266237 18 81 31.0 36.5 33.8 0.5 120 chr2R 5266117 intron d4 + chr2R 5266177 intron d4 + chr2R 5266237 intron d4 + chr2R_18_5265001 chr2R_5265001 RAL-309 270 chr2R 5543217 5543223 chr2R 5547283 5547307 invader1 5 4075 0.0 2.0 1.0 2.5 4090 chr2R 5543217 intron CG30438 + chr2R 5545262 intron CG30438 + chr2R 5547307 intron CG30438 + chr2R_5_5545001 chr2R_5545001 RAL-309 271 chr2R 5771463 5771494 chr2R 5771543 5771574 14 78 3.5 1.5 2.5 4.0 111 chr2R 5771463 intron Gp210 + chr2R 5771518 intron Gp210 + chr2R 5771574 intron Gp210 + chr2R_14_5770001 chr2R_5770001 RAL-309 272 chr2R 5772520 5772548 chr2R 5772598 5772626 4 77 2.0 0.5 1.2 1.8 106 chr2R 5772520 3` UTR Gp210 + chr2R 5772573 3` UTR Gp210 + chr2R 5772626 3` UTR Gp210 + chr2R_4_5770001 chr2R_5770001 RAL-309 273 chr2R 5947938 5947967 chr2R 5948086 5948117 10 148 3.0 1.0 2.0 3.3 179 chr2R 5947938 intergenic not near genes chr2R 5948028 intergenic not near genes chr2R 5948117 intergenic not near genes chr2R_10_5945001 chr2R_5945001 RAL-309 274 chr2R 6173552 6173573 chr2R 6173630 6173643 7 75 4.0 1.5 2.8 1.8 91 chr2R 6173552 intergenic Cyp6w1 + chr2R 6173598 intergenic Cyp6w1 + chr2R 6173643 intergenic Cyp6w1 + chr2R_7_6170001 chr2R_6170001 RAL-309 275 chr2R 6494523 6494555 chr2R 6499284 6499317 F-element 9 4760 1.5 1.0 1.2 4.1 4794 chr2R 6494523 intergenic not near genes chr2R 6496920 intergenic not near genes chr2R 6499317 intergenic not near genes chr2R_9_6495001 chr2R_6495001 RAL-309 276 chr2R 6500957 6500986 chr2R 6501051 6501081 12 92 5.5 4.0 4.8 2.1 124 chr2R 6500957 intergenic not near genes chr2R 6501019 intergenic not near genes chr2R 6501081 intergenic not near genes chr2R_12_6500001 chr2R_6500001 RAL-309 277 chr2R 6646801 6646828 chr2R 6647074 6647098 5 272 1.0 0.0 0.5 3.3 297 chr2R 6646801 intergenic not near genes chr2R 6646950 intergenic not near genes chr2R 6647098 intergenic not near genes chr2R_5_6645001 chr2R_6645001 RAL-309 278 chr2R 6712585 6712596 chr2R 6712682 6712693 6 96 5.5 2.0 3.8 1.2 108 chr2R 6712585 intron,intron CG3409 -,CG45092 - chr2R 6712639 intron,intron CG3409 -,CG45092 - chr2R 6712693 intron,intron CG3409 -,CG45092 - chr2R_6_6710001 chr2R_6710001 RAL-309 279 chr2R 6738848 6738877 chr2R 6738930 6738959 10 81 1.5 4.5 3.0 2.5 111 chr2R 6738848 intron l(2)01289 - chr2R 6738904 intron l(2)01289 - chr2R 6738959 intron l(2)01289 - chr2R_10_6735001 chr2R_6735001 RAL-309 280 chr2R 6865688 6865720 chr2R 6865783 6865815 5 93 2.0 2.0 2.0 1.7 127 chr2R 6865688 intron coro - chr2R 6865752 intron coro - chr2R 6865815 intron coro - chr2R_5_6865001 chr2R_6865001 RAL-309 281 chr2R 6876229 6876242 chr2R 6876311 6876324 4 82 3.0 3.5 3.2 1.0 95 chr2R 6876229 intron,intron CR44169 +,Spn42Da - chr2R 6876276 5` UTR,intron CR44169 +,Spn42Da - chr2R 6876324 5` UTR,intron CR44169 +,Spn42Da - chr2R_4_6875001 chr2R_6875001 RAL-309 282 chr2R 7052038 7052047 chr2R 7052115 7052126 6 78 5.5 3.5 4.5 1.1 88 chr2R 7052038 intergenic lbm + chr2R 7052082 intergenic lbm + chr2R 7052126 intergenic lbm + chr2R_6_7050001 chr2R_7050001 RAL-309 283 chr2R 7052048 7052071 chr2R 7052114 7052150 8 74 3.0 3.5 3.2 1.9 102 chr2R 7052048 intergenic lbm + chr2R 7052099 intergenic lbm + chr2R 7052150 intergenic lbm + chr2R_8_7050001 chr2R_7050001 RAL-309 284 chr2R 7101615 7101649 chr2R 7101709 7101726 7 91 2.5 4.0 3.2 1.7 111 chr2R 7101615 intron esn + chr2R 7101670 intron esn + chr2R 7101726 intron esn + chr2R_7_7100001 chr2R_7100001 RAL-309 285 chr2R 7235817 7235851 chr2R 7240909 7240942 jockey 5 5092 5.5 3.5 4.5 0.9 5125 chr2R 7235817 intergenic not near genes chr2R 7238380 intergenic not near genes chr2R 7240942 intergenic not near genes chr2R_5_7235001 chr2R_7235001 RAL-309 286 chr2R 7418148 7418155 chr2R 7418227 7418234 4 79 1.0 3.0 2.0 1.3 86 chr2R 7418148 intergenic not near genes chr2R 7418191 intergenic not near genes chr2R 7418234 intergenic not near genes chr2R_4_7415001 chr2R_7415001 RAL-309 287 chr2R 7434891 7434917 chr2R 7439192 7439217 Juan 4 4296 1.0 2.0 1.5 1.6 4326 chr2R 7434891 intergenic so + chr2R 7437054 intergenic not near genes chr2R 7439217 intergenic not near genes chr2R_4_7435001 chr2R_7435001 RAL-309 288 chr2R 7692011 7692037 chr2R 7692092 7692096 4 76 1.5 0.5 1.0 2.0 85 chr2R 7692011 intron CG1399 - chr2R 7692054 intron CG1399 - chr2R 7692096 intron CG1399 - chr2R_4_7690001 chr2R_7690001 RAL-309 289 chr2R 7714094 7714107 chr2R 7714170 7714182 6 76 1.5 0.0 0.8 3.3 88 chr2R 7714094 exon CG1942 + chr2R 7714138 3` UTR CG1942 + chr2R 7714182 3` UTR CG1942 + chr2R_6_7710001 chr2R_7710001 RAL-309 290 chr2R 7760290 7760306 chr2R 7760426 7760443 7 136 0.5 5.0 2.8 1.8 153 chr2R 7760290 intron,intron CG30497 -,CG45093 - chr2R 7760366 intron,intron CG30497 -,CG45093 - chr2R 7760443 intron,intron CG30497 -,CG45093 - chr2R_7_7760001 chr2R_7760001 RAL-309 291 chr2R 7815678 7815704 chr2R 7822147 7822157 Burdock 7 6466 1.0 5.5 3.2 1.7 6479 chr2R 7815678 intergenic CG1882 + chr2R 7818918 intergenic not near genes chr2R 7822157 3` UTR cathD - chr2R_7_7815001 chr2R_7815001 RAL-309 292 chr2R 7842197 7842223 chr2R 7842285 7842305 12 85 0.5 3.5 2.0 4.0 108 chr2R 7842197 intron Dgk - chr2R 7842251 intron Dgk - chr2R 7842305 intron Dgk - chr2R_12_7840001 chr2R_7840001 RAL-309 293 chr2R 7869189 7869220 chr2R 7873975 7874006 Doc 6 4783 2.0 5.0 3.5 1.3 4817 chr2R 7869189 intron Dgk - chr2R 7871598 intron Dgk - chr2R 7874006 intron Dgk - chr2R_6_7870001 chr2R_7870001 RAL-309 294 chr2R 7919978 7920002 chr2R 7924495 7924526 5 4520 11.0 26.0 18.5 0.3 4548 chr2R 7919978 intron Cul1 + chr2R 7922252 exon Or43b - chr2R 7924526 exon Kdm4A - chr2R_5_7920001 chr2R_7920001 RAL-309 295 chr2R 8015656 8015682 chr2R 8017679 8017702 6 2019 0.5 5.0 2.8 1.6 2046 chr2R 8015656 intergenic mir-4981 + chr2R 8016679 intergenic not near genes chr2R 8017702 intergenic not near genes chr2R_6_8015001 chr2R_8015001 RAL-309 296 chr2R 8067064 8067097 chr2R 8067148 8067181 9 81 0.0 2.0 1.0 4.5 117 chr2R 8067064 intron CG17977 - chr2R 8067122 intron CG17977 - chr2R 8067181 exon CG17977 - chr2R_9_8065001 chr2R_8065001 RAL-309 297 chr2R 8089257 8089277 chr2R 8089343 8089363 5 86 3.0 1.0 2.0 1.7 106 chr2R 8089257 3` UTR sut2 + chr2R 8089310 intergenic sut2 +,sut3 + chr2R 8089363 intergenic sut2 +,sut3 + chr2R_5_8085001 chr2R_8085001 RAL-309 298 chr2R 8105933 8105962 chr2R 8106024 8106053 7 91 2.5 4.5 3.5 1.6 120 chr2R 8105933 5` UTR Cul4 - chr2R 8105993 intron Cul4 - chr2R 8106053 5` UTR Cul4 - chr2R_7_8105001 chr2R_8105001 RAL-309 299 chr2R 8155578 8155605 chr2R 8155667 8155689 7 88 3.5 2.5 3.0 1.8 111 chr2R 8155578 intron,intron Lpin -,kermit - chr2R 8155634 intron,intron Lpin -,kermit - chr2R 8155689 intron,intron Lpin -,kermit - chr2R_7_8155001 chr2R_8155001 RAL-309 300 chr2R 8159158 8159184 chr2R 8159654 8159680 5 492 0.0 6.0 3.0 1.2 522 chr2R 8159158 intergenic CG8708 - chr2R 8159419 3` UTR CG8708 - chr2R 8159680 exon CG8708 - chr2R_5_8155001 chr2R_8155001 RAL-309 301 chr2R 8160937 8160949 chr2R 8161027 8161039 1360 7 89 2.5 8.5 5.5 1.1 102 chr2R 8160937 intron CG8708 - chr2R 8160988 intron CG8708 - chr2R 8161039 intron CG8708 - chr2R_7_8160001 chr2R_8160001 RAL-309 302 chr2R 8259573 8259587 chr2R 8259653 8259666 5 80 2.0 2.5 2.2 1.6 93 chr2R 8259573 exon CG30369 + chr2R 8259620 exon CG30369 + chr2R 8259666 exon CG30369 + chr2R_5_8255001 chr2R_8255001 RAL-309 303 chr2R 8330863 8330892 chr2R 8331349 8331363 roo 6 483 3.5 3.5 3.5 1.3 500 chr2R 8330863 intron pdm3 + chr2R 8331113 intron pdm3 + chr2R 8331363 intron pdm3 + chr2R_6_8330001 chr2R_8330001 RAL-309 304 chr2R 8398233 8398244 chr2R 8402993 8403025 Doc 5 4776 3.0 4.5 3.8 1.0 4792 chr2R 8398233 intron CG2121 - chr2R 8400629 intron CG2121 - chr2R 8403025 intron CG2121 - chr2R_5_8400001 chr2R_8400001 RAL-309 305 chr2R 8452035 8452060 chr2R 8452116 8452143 12 82 4.0 2.0 3.0 3.0 108 chr2R 8452035 intergenic Mal-A1 - chr2R 8452089 intergenic Mal-A1 - chr2R 8452143 intergenic Mal-A1 - chr2R_12_8450001 chr2R_8450001 RAL-309 306 chr2R 8508758 8508795 chr2R 8508841 8508858 4 70 1.5 3.5 2.5 1.1 100 chr2R 8508758 intron mtt - chr2R 8508808 intron mtt - chr2R 8508858 intron mtt - chr2R_4_8505001 chr2R_8505001 RAL-309 307 chr2R 8536217 8536229 chr2R 8536431 8536461 5 228 2.5 2.5 2.5 1.4 244 chr2R 8536217 intergenic not near genes chr2R 8536339 intergenic not near genes chr2R 8536461 intergenic not near genes chr2R_5_8535001 chr2R_8535001 RAL-309 308 chr2R 8607933 8607966 chr2R 8608017 8608048 9 82 0.5 2.5 1.5 3.6 115 chr2R 8607933 intron rgr + chr2R 8607990 intron rgr + chr2R 8608048 intron rgr + chr2R_9_8605001 chr2R_8605001 RAL-309 309 chr2R 8722778 8722786 chr2R 8723007 8723027 pogo 6 236 4.0 3.5 3.8 1.2 249 chr2R 8722778 intron CG14767 - chr2R 8722902 intron CG14767 - chr2R 8723027 intron CG14767 - chr2R_6_8720001 chr2R_8720001 RAL-309 310 chr2R 8827763 8827784 chr2R 8827839 8827860 8 76 5.0 4.5 4.8 1.4 97 chr2R 8827763 intron sns + chr2R 8827812 intron sns + chr2R 8827860 intron sns + chr2R_8_8825001 chr2R_8825001 RAL-309 311 chr2R 9052708 9052732 chr2R 9052785 9052807 9 78 0.5 3.0 1.8 3.2 99 chr2R 9052708 intron CG13743 - chr2R 9052758 intron CG13743 - chr2R 9052807 intron CG13743 - chr2R_9_9050001 chr2R_9050001 RAL-309 312 chr2R 9063378 9063395 chr2R 9063650 9063660 5 268 0.0 1.5 0.8 2.8 282 chr2R 9063378 intron ana + chr2R 9063519 intron ana + chr2R 9063660 intron ana + chr2R_5_9060001 chr2R_9060001 RAL-309 313 chr2R 9065918 9065948 chr2R 9066000 9066030 5 82 3.0 2.0 2.5 1.4 112 chr2R 9065918 intron ana + chr2R 9065974 intron ana + chr2R 9066030 intron ana + chr2R_5_9065001 chr2R_9065001 RAL-309 314 chr2R 9091813 9091846 chr2R 9091918 9091927 5 100 1.0 1.0 1.0 2.5 114 chr2R 9091813 intron CG8080 - chr2R 9091870 intron CG8080 - chr2R 9091927 intron CG8080 - chr2R_5_9090001 chr2R_9090001 RAL-309 315 chr2R 9212698 9212725 chr2R 9213177 9213193 roo 8 478 3.0 2.5 2.8 2.1 495 chr2R 9212698 intergenic CR45309 + chr2R 9212946 intergenic CR45309 + chr2R 9213193 5` UTR CR45309 + chr2R_8_9210001 chr2R_9210001 RAL-309 316 chr2R 9236511 9236543 chr2R 9237284 9237315 6 772 1.0 2.5 1.8 2.1 804 chr2R 9236511 intron hig - chr2R 9236913 intron hig - chr2R 9237315 intron hig - chr2R_6_9235001 chr2R_9235001 RAL-309 317 chr2R 9296111 9296141 chr2R 9296197 9296215 5 83 1.0 2.0 1.5 2.0 104 chr2R 9296111 intron Drep-2 + chr2R 9296163 intron Drep-2 + chr2R 9296215 intron Drep-2 + chr2R_5_9295001 chr2R_9295001 RAL-309 318 chr2R 9406644 9406673 chr2R 9406723 9406737 5 75 3.5 1.0 2.2 1.6 93 chr2R 9406644 intron wun - chr2R 9406690 intron wun - chr2R 9406737 intron wun - chr2R_5_9405001 chr2R_9405001 RAL-309 319 chr2R 9412076 9412114 chr2R 9412187 9412192 9 107 2.0 0.5 1.2 4.1 116 chr2R 9412076 intron wun - chr2R 9412134 intron wun - chr2R 9412192 intron wun - chr2R_9_9410001 chr2R_9410001 RAL-309 320 chr2R 9510667 9510697 chr2R 9510783 9510813 7 115 1.5 2.5 2.0 2.3 146 chr2R 9510667 intron brp + chr2R 9510740 intron brp + chr2R 9510813 intron brp + chr2R_7_9510001 chr2R_9510001 RAL-309 321 chr2R 9605836 9605847 chr2R 9605943 9605954 4 107 1.5 6.5 4.0 0.8 118 chr2R 9605836 3` UTR CR44285 - chr2R 9605895 intergenic CR44285 -,GstT1 +,CG1902 + chr2R 9605954 intergenic GstT1 +,CR44285 -,CG1902 + chr2R_4_9605001 chr2R_9605001 RAL-309 322 chr2R 9699406 9699427 chr2R 9699493 9699498 5 77 4.5 2.0 3.2 1.2 92 chr2R 9699406 intergenic not near genes chr2R 9699452 intergenic not near genes chr2R 9699498 intergenic not near genes chr2R_5_9695001 chr2R_9695001 RAL-309 323 chr2R 9871040 9871072 chr2R 9871526 9871558 roo 5 483 3.0 5.0 4.0 1.0 518 chr2R 9871040 intron cbx - chr2R 9871299 intron cbx - chr2R 9871558 intron,5` UTR cbx -,CG18446 + chr2R_5_9870001 chr2R_9870001 RAL-309 324 chr2R 10001534 10001546 chr2R 10001606 10001629 5 74 4.0 2.5 3.2 1.2 95 chr2R 10001534 intron Pka-R2 - chr2R 10001582 intron Pka-R2 - chr2R 10001629 intron Pka-R2 - chr2R_5_10000001 chr2R_10000001 RAL-309 325 chr2R 10005851 10005883 chr2R 10007011 10007032 1360 8 1160 3.0 1.0 2.0 2.7 1181 chr2R 10005851 intron Pka-R2 - chr2R 10006442 intron Pka-R2 - chr2R 10007032 intron Pka-R2 - chr2R_8_10005001 chr2R_10005001 RAL-309 326 chr2R 10017650 10017678 chr2R 10017729 10017755 7 75 2.0 1.5 1.8 2.5 105 chr2R 10017650 intron Pka-R2 - chr2R 10017702 intron Pka-R2 - chr2R 10017755 intron Pka-R2 - chr2R_7_10015001 chr2R_10015001 RAL-309 327 chr2R 10132201 10132221 chr2R 10132280 10132301 6 79 2.0 4.0 3.0 1.5 100 chr2R 10132201 intron gem + chr2R 10132251 intron gem + chr2R 10132301 intron gem + chr2R_6_10130001 chr2R_10130001 RAL-309 328 chr2R 10197388 10197415 chr2R 10197474 10197501 4 86 0.0 2.5 1.2 1.8 113 chr2R 10197388 3` UTR CG34221 - chr2R 10197444 3` UTR CG34221 - chr2R 10197501 3` UTR CG34221 - chr2R_4_10195001 chr2R_10195001 RAL-309 329 chr2R 10454098 10454128 chr2R 10454174 10454205 7 77 2.0 2.5 2.2 2.2 107 chr2R 10454098 intron,intron Galphao +,Cyp49a1 - chr2R 10454152 intron,intron Galphao +,Cyp49a1 - chr2R 10454205 intron,intron Galphao +,Cyp49a1 - chr2R_7_10450001 chr2R_10450001 RAL-309 330 chr2R 10469026 10469040 chr2R 10469152 10469166 7 126 4.5 6.0 5.2 1.1 140 chr2R 10469026 intron CG11777 + chr2R 10469096 intron CG11777 + chr2R 10469166 intron CG11777 + chr2R_7_10465001 chr2R_10465001 RAL-309 331 chr2R 10658066 10658084 chr2R 10658158 10658167 4 90 3.0 4.5 3.8 0.8 101 chr2R 10658066 intergenic not near genes chr2R 10658116 intergenic not near genes chr2R 10658167 intergenic not near genes chr2R_4_10655001 chr2R_10655001 RAL-309 332 chr2R 10658934 10658964 chr2R 10659017 10659020 4 75 1.0 0.0 0.5 2.7 86 chr2R 10658934 intergenic not near genes chr2R 10658977 intergenic not near genes chr2R 10659020 intergenic not near genes chr2R_4_10655001 chr2R_10655001 RAL-309 333 chr2R 10671256 10671274 chr2R 10671334 10671352 5 78 3.5 0.0 1.8 1.8 96 chr2R 10671256 intergenic not near genes chr2R 10671304 intergenic not near genes chr2R 10671352 intergenic not near genes chr2R_5_10670001 chr2R_10670001 RAL-309 334 chr2R 10771010 10771025 chr2R 10771091 10771106 7 81 3.5 1.5 2.5 2.0 96 chr2R 10771010 intron CG33144 - chr2R 10771058 intron CG33144 - chr2R 10771106 intron CG33144 - chr2R_7_10770001 chr2R_10770001 RAL-309 335 chr2R 10948033 10948059 chr2R 10955584 10955609 17.6 4 7548 1.0 2.5 1.8 1.4 7576 chr2R 10948033 intergenic not near genes chr2R 10951821 intergenic not near genes chr2R 10955609 intergenic not near genes chr2R_4_10950001 chr2R_10950001 RAL-309 336 chr2R 11009812 11009847 chr2R 11018986 11019017 roo 11 9171 0.5 1.5 1.0 5.5 9205 chr2R 11009812 intron luna - chr2R 11014414 intron luna - chr2R 11019017 intron luna - chr2R_11_11010001 chr2R_11010001 RAL-309 337 chr2R 11019878 11019893 chr2R 11024944 11024956 jockey 4 5065 5.0 2.5 3.8 0.8 5078 chr2R 11019878 intron luna - chr2R 11022417 intron luna - chr2R 11024956 intron luna - chr2R_4_11020001 chr2R_11020001 RAL-309 338 chr2R 11097357 11097383 chr2R 11097462 11097472 5 100 2.0 2.0 2.0 1.7 115 chr2R 11097357 intron luna - chr2R 11097414 intron luna - chr2R 11097472 intron luna - chr2R_5_11095001 chr2R_11095001 RAL-309 339 chr2R 11102859 11102881 chr2R 11102949 11102970 5 90 4.5 0.0 2.2 1.6 111 chr2R 11102859 intron luna - chr2R 11102914 intron luna - chr2R 11102970 intron luna - chr2R_5_11100001 chr2R_11100001 RAL-309 340 chr2R 11150572 11150808 chr2R 11150645 11150884 5 79 2.0 0.0 1.0 2.5 312 chr2R 11150572 intron CG13229 - chr2R 11150728 intron CG13229 - chr2R 11150884 intron CG13229 - chr2R_5_11150001 chr2R_11150001 RAL-309 341 chr2R 11202119 11202149 chr2R 11202213 11202241 6 92 1.0 2.5 1.8 2.1 122 chr2R 11202119 intron shn + chr2R 11202180 intron shn + chr2R 11202241 intron shn + chr2R_6_11200001 chr2R_11200001 RAL-309 342 chr2R 11207816 11207844 chr2R 11208009 11208012 BS 6 186 6.0 2.5 4.2 1.2 196 chr2R 11207816 intron shn + chr2R 11207914 intron shn + chr2R 11208012 intron shn + chr2R_6_11205001 chr2R_11205001 RAL-309 343 chr2R 11274300 11274329 chr2R 11274497 11274500 8 192 4.0 1.5 2.8 2.1 200 chr2R 11274300 intron TpnC47D - chr2R 11274400 intron TpnC47D - chr2R 11274500 intron TpnC47D - chr2R_8_11270001 chr2R_11270001 RAL-309 344 chr2R 11415528 11415549 chr2R 11418676 11418696 opus 4 3145 4.5 4.5 4.5 0.7 3168 chr2R 11415528 intron Drip - chr2R 11417112 intron Drip - chr2R 11418696 intron Drip - chr2R_4_11415001 chr2R_11415001 RAL-309 345 chr2R 11426110 11426126 chr2R 11426494 11426498 4 379 19.5 7.5 13.5 0.3 388 chr2R 11426110 intron Drip - chr2R 11426304 intron Drip - chr2R 11426498 intron Drip - chr2R_4_11425001 chr2R_11425001 RAL-309 346 chr2R 11472651 11472677 chr2R 11473846 11473874 pogo 6 1195 3.0 4.0 3.5 1.3 1223 chr2R 11472651 intergenic not near genes chr2R 11473262 intergenic not near genes chr2R 11473874 intergenic not near genes chr2R_6_11470001 chr2R_11470001 RAL-309 347 chr2R 11516793 11516823 chr2R 11516876 11516906 11 77 1.5 2.0 1.8 3.9 113 chr2R 11516793 intergenic not near genes chr2R 11516850 intergenic not near genes chr2R 11516906 intergenic not near genes chr2R_11_11515001 chr2R_11515001 RAL-309 348 chr2R 11535158 11535161 chr2R 11535210 11535234 4 69 1.5 0.5 1.0 2.0 76 chr2R 11535158 intergenic not near genes chr2R 11535196 intergenic not near genes chr2R 11535234 intergenic not near genes chr2R_4_11535001 chr2R_11535001 RAL-309 349 chr2R 11537216 11537239 chr2R 11537293 11537315 6 76 3.0 3.5 3.2 1.4 99 chr2R 11537216 intergenic not near genes chr2R 11537266 intergenic not near genes chr2R 11537315 intergenic not near genes chr2R_6_11535001 chr2R_11535001 RAL-309 350 chr2R 11822984 11823005 chr2R 11823058 11823082 7 75 1.5 4.0 2.8 1.8 98 chr2R 11822984 intergenic not near genes chr2R 11823033 intergenic not near genes chr2R 11823082 intergenic not near genes chr2R_7_11820001 chr2R_11820001 RAL-309 351 chr2R 8518781 8518797 chr2R 12066175 12066196 6 3547395 6.5 11.5 9.0 0.6 3547415 chr2R 8518781 intron mtt - chr2R 10292488 intron CAP + chr2R 12066196 intron CG8888 - chr2R_6_10290001 chr2R_10290001 RAL-309 352 chr2R 12124828 12124859 chr2R 12124912 12124942 9 82 2.5 2.0 2.2 2.8 114 chr2R 12124828 intergenic not near genes chr2R 12124885 intergenic not near genes chr2R 12124942 intergenic not near genes chr2R_9_12120001 chr2R_12120001 RAL-309 353 chr2R 12187471 12187481 chr2R 12190087 12190124 25 2624 59.0 68.0 63.5 0.4 2653 chr2R 12187471 exon Cyp6g1 + chr2R 12188798 exon Cyp6g2 - chr2R 12190124 exon Cyp6g2 - chr2R_25_12185001 chr2R_12185001 RAL-309 354 chr2R 12272322 12272353 chr2R 12272405 12272435 10 80 2.0 1.0 1.5 4.0 113 chr2R 12272322 intron Cam + chr2R 12272378 intron Cam + chr2R 12272435 intron Cam + chr2R_10_12270001 chr2R_12270001 RAL-309 355 chr2R 12334877 12334897 chr2R 12334954 12334975 5 78 2.0 3.5 2.8 1.3 98 chr2R 12334877 intergenic CG8490 + chr2R 12334926 intergenic CG8490 + chr2R 12334975 intergenic CG8490 + chr2R_5_12330001 chr2R_12330001 RAL-309 356 chr2R 12363388 12363417 chr2R 12363820 12363847 6 430 0.5 2.5 1.5 2.4 459 chr2R 12363388 intergenic CG30043 + chr2R 12363618 intergenic CG30043 + chr2R 12363847 intergenic not near genes chr2R_6_12360001 chr2R_12360001 RAL-309 357 chr2R 12385343 12385379 chr2R 12385424 12385435 11 72 1.0 2.0 1.5 4.4 92 chr2R 12385343 intergenic not near genes chr2R 12385389 intergenic not near genes chr2R 12385435 intergenic not near genes chr2R_11_12385001 chr2R_12385001 RAL-309 358 chr2R 12501703 12501727 chr2R 12503848 12503872 Rt1c 7 2154 3.5 3.5 3.5 1.6 2169 chr2R 12501703 intron fdl - chr2R 12502788 intron fdl - chr2R 12503872 intron fdl - chr2R_7_12500001 chr2R_12500001 RAL-309 359 chr2R 12789295 12789328 chr2R 12797658 12797670 roo 9 8351 1.5 3.0 2.2 2.8 8375 chr2R 12789295 intron,3` UTR sca +,CR45137 - chr2R 12793482 intron,intron sca +,CR45137 - chr2R 12797670 intron,3` UTR sca +,CR45137 - chr2R_9_12790001 chr2R_12790001 RAL-309 360 chr2R 12808324 12808341 chr2R 12808418 12808436 4 92 2.5 4.0 3.2 1.0 112 chr2R 12808324 intergenic not near genes chr2R 12808380 intergenic not near genes chr2R 12808436 intergenic not near genes chr2R_4_12805001 chr2R_12805001 RAL-309 361 chr2R 13106412 13106423 chr2R 13106498 13106519 5 90 1.5 7.5 4.5 0.9 107 chr2R 13106412 intergenic not near genes chr2R 13106466 intergenic not near genes chr2R 13106519 intergenic not near genes chr2R_5_13105001 chr2R_13105001 RAL-309 362 chr2R 13167438 13167458 chr2R 13167532 13167551 4 94 1.0 0.0 0.5 2.7 113 chr2R 13167438 intron GLaz - chr2R 13167494 intron GLaz - chr2R 13167551 intron GLaz - chr2R_4_13165001 chr2R_13165001 RAL-309 363 chr2R 13249604 13249623 chr2R 13249693 13249708 4 88 1.5 2.0 1.8 1.4 104 chr2R 13249604 intron CG4712 - chr2R 13249656 intron CG4712 - chr2R 13249708 intron CG4712 - chr2R_4_13245001 chr2R_13245001 RAL-309 364 chr2R 13345587 13345617 chr2R 13346158 13346188 7 570 2.0 3.0 2.5 2.0 601 chr2R 13345587 intron CR44206 - chr2R 13345888 intron CR44206 - chr2R 13346188 intron CR44206 - chr2R_7_13345001 chr2R_13345001 RAL-309 365 chr2R 13566257 13566277 chr2R 13566337 13566357 8 80 3.5 0.0 1.8 2.9 100 chr2R 13566257 intergenic not near genes chr2R 13566307 intergenic not near genes chr2R 13566357 intergenic not near genes chr2R_8_13565001 chr2R_13565001 RAL-309 366 chr2R 13608272 13608298 chr2R 13608356 13608372 5 79 1.0 1.5 1.2 2.3 100 chr2R 13608272 intergenic CG12464 - chr2R 13608322 intergenic CG12464 - chr2R 13608372 intergenic CG12464 - chr2R_5_13605001 chr2R_13605001 RAL-309 367 chr2R 13697849 13697863 chr2R 13698140 13698162 4 297 3.0 2.5 2.8 1.1 313 chr2R 13697849 intron fas + chr2R 13698006 intron fas + chr2R 13698162 intron fas + chr2R_4_13695001 chr2R_13695001 RAL-309 368 chr2R 13768995 13769005 chr2R 13769093 13769103 5 98 2.0 8.0 5.0 0.8 108 chr2R 13768995 intergenic not near genes chr2R 13769049 intergenic not near genes chr2R 13769103 intergenic not near genes chr2R_5_13765001 chr2R_13765001 RAL-309 369 chr2R 13888762 13888788 chr2R 13888838 13888864 6 76 2.5 0.0 1.2 2.7 102 chr2R 13888762 intron shot - chr2R 13888813 intron shot - chr2R 13888864 intron shot - chr2R_6_13885001 chr2R_13885001 RAL-309 370 chr2R 13925848 13925872 chr2R 13926024 13926048 6 176 3.0 2.0 2.5 1.7 200 chr2R 13925848 intron shot - chr2R 13925948 intron shot - chr2R 13926048 intron shot - chr2R_6_13925001 chr2R_13925001 RAL-309 371 chr2R 14252402 14252429 chr2R 14252492 14252518 6 88 3.0 3.0 3.0 1.5 116 chr2R 14252402 3` UTR Mdr50 + chr2R 14252460 3` UTR Mdr50 + chr2R 14252518 3` UTR Mdr50 + chr2R_6_14250001 chr2R_14250001 RAL-309 372 chr2R 14277581 14277599 chr2R 14277663 14277676 4 80 6.5 2.5 4.5 0.7 95 chr2R 14277581 5` UTR Ih + chr2R 14277628 5` UTR Ih + chr2R 14277676 5` UTR Ih + chr2R_4_14275001 chr2R_14275001 RAL-309 373 chr2R 14393872 14393899 chr2R 14393957 14393984 4 83 4.5 2.5 3.5 0.9 112 chr2R 14393872 intergenic not near genes chr2R 14393928 intergenic not near genes chr2R 14393984 intergenic not near genes chr2R_4_14390001 chr2R_14390001 RAL-309 374 chr2R 14394231 14394239 chr2R 14399020 14399028 Doc 4 4789 3.5 1.5 2.5 1.1 4797 chr2R 14394231 intergenic not near genes chr2R 14396630 intergenic not near genes chr2R 14399028 intergenic not near genes chr2R_4_14395001 chr2R_14395001 RAL-309 375 chr2R 14405420 14405450 chr2R 14405782 14405812 5 362 1.5 1.5 1.5 2.0 392 chr2R 14405420 intergenic not near genes chr2R 14405616 intergenic not near genes chr2R 14405812 intergenic not near genes chr2R_5_14405001 chr2R_14405001 RAL-309 376 chr2R 14410999 14411017 chr2R 14412579 14412610 5 1583 20.5 34.5 27.5 0.2 1611 chr2R 14410999 exon CG17385 - chr2R 14411804 intergenic Sin1 +,CG17385 - chr2R 14412610 exon Sin1 + chr2R_5_14410001 chr2R_14410001 RAL-309 377 chr2R 14467322 14467327 chr2R 14476463 14476470 roo 5 9150 0.5 2.5 1.5 2.0 9148 chr2R 14467322 intergenic not near genes chr2R 14471896 intergenic not near genes chr2R 14476470 5` UTR CR44462 + chr2R_5_14470001 chr2R_14470001 RAL-309 378 chr2R 14489880 14489897 chr2R 14490132 14490148 5 251 4.5 1.5 3.0 1.2 268 chr2R 14489880 intron L + chr2R 14490014 intron L + chr2R 14490148 intron L + chr2R_5_14490001 chr2R_14490001 RAL-309 379 chr2R 14530748 14530772 chr2R 14530830 14530854 6 82 4.0 5.0 4.5 1.1 106 chr2R 14530748 intron ttv + chr2R 14530801 intron ttv + chr2R 14530854 intron ttv + chr2R_6_14530001 chr2R_14530001 RAL-309 380 chr2R 14565558 14565591 chr2R 14565635 14565664 6 72 1.5 3.0 2.2 1.9 106 chr2R 14565558 intron ttv + chr2R 14565611 intron ttv + chr2R 14565664 intron ttv + chr2R_6_14565001 chr2R_14565001 RAL-309 381 chr2R 14922141 14922174 chr2R 14922217 14922250 15 73 2.0 3.0 2.5 4.3 109 chr2R 14922141 intron CG10249 - chr2R 14922196 intron CG10249 - chr2R 14922250 intron CG10249 - chr2R_15_14920001 chr2R_14920001 RAL-309 382 chr2R 14968452 14968473 chr2R 14968525 14968555 8 78 2.5 3.0 2.8 2.1 103 chr2R 14968452 intron ckn + chr2R 14968504 intron ckn + chr2R 14968555 intron ckn + chr2R_8_14965001 chr2R_14965001 RAL-309 383 chr2R 15004727 15004736 chr2R 15005056 15005064 jockey 4 327 5.0 0.5 2.8 1.1 337 chr2R 15004727 intergenic not near genes chr2R 15004896 intergenic not near genes chr2R 15005064 intergenic not near genes chr2R_4_15000001 chr2R_15000001 RAL-309 384 chr2R 15004738 15004760 chr2R 15005054 15005093 jockey 4 327 0.5 0.5 0.5 2.7 355 chr2R 15004738 intergenic not near genes chr2R 15004916 intergenic not near genes chr2R 15005093 intergenic not near genes chr2R_4_15000001 chr2R_15000001 RAL-309 385 chr2R 15015460 15015484 chr2R 15022884 15022895 mdg1 11 7422 5.0 4.5 4.8 1.9 7435 chr2R 15015460 intron hbs + chr2R 15019178 intron hbs + chr2R 15022895 intron hbs + chr2R_11_15015001 chr2R_15015001 RAL-309 386 chr2R 15051082 15051110 chr2R 15051164 15051185 5 80 2.0 3.0 2.5 1.4 103 chr2R 15051082 intergenic not near genes chr2R 15051134 intergenic not near genes chr2R 15051185 intergenic not near genes chr2R_5_15050001 chr2R_15050001 RAL-309 387 chr2R 15084991 15085006 chr2R 15092040 15092055 297 4 7049 2.0 1.5 1.8 1.4 7064 chr2R 15084991 intergenic not near genes chr2R 15088523 intergenic not near genes chr2R 15092055 5` UTR CR44457 + chr2R_4_15085001 chr2R_15085001 RAL-309 388 chr2R 15094885 15094911 chr2R 15094962 15094988 5 76 1.5 1.0 1.2 2.3 103 chr2R 15094885 intergenic not near genes chr2R 15094936 intergenic not near genes chr2R 15094988 intergenic not near genes chr2R_5_15090001 chr2R_15090001 RAL-309 389 chr2R 15119319 15119346 chr2R 15127800 15127808 Tirant 6 8477 1.5 5.0 3.2 1.4 8489 chr2R 15119319 intron chn + chr2R 15123564 intron chn + chr2R 15127808 intron chn + chr2R_6_15120001 chr2R_15120001 RAL-309 390 chr2R 15168274 15168301 chr2R 15168367 15168394 8 92 2.0 2.5 2.2 2.5 120 chr2R 15168274 intron igl + chr2R 15168334 intron igl + chr2R 15168394 intron igl + chr2R_8_15165001 chr2R_15165001 RAL-309 391 chr2R 15375352 15375359 chr2R 15376168 15376176 4 817 0.5 0.5 0.5 2.7 824 chr2R 15375352 intergenic not near genes chr2R 15375764 intergenic not near genes chr2R 15376176 intergenic dup - chr2R_4_15375001 chr2R_15375001 RAL-309 392 chr2R 15410780 15410801 chr2R 15410971 15410975 4 187 2.5 2.5 2.5 1.1 195 chr2R 15410780 intron CG43729 + chr2R 15410878 intron CG43729 + chr2R 15410975 intron CG43729 + chr2R_4_15410001 chr2R_15410001 RAL-309 393 chr2R 15627319 15627356 chr2R 15627399 15627411 5 61 1.0 2.5 1.8 1.8 92 chr2R 15627319 intron CG42524 + chr2R 15627365 intron CG42524 + chr2R 15627411 intron CG42524 + chr2R_5_15625001 chr2R_15625001 RAL-309 394 chr2R 15656003 15656013 chr2R 15656083 15656093 5 80 1.5 4.5 3.0 1.2 90 chr2R 15656003 intron CG42524 + chr2R 15656048 intron CG42524 + chr2R 15656093 intron CG42524 + chr2R_5_15655001 chr2R_15655001 RAL-309 395 chr2R 15696519 15696553 chr2R 15696641 15696676 7 122 2.5 3.0 2.8 1.8 157 chr2R 15696519 intergenic CG33461 +,CG33462 + chr2R 15696598 intergenic CG33461 +,CG33462 + chr2R 15696676 intergenic CG33462 +,CG33461 + chr2R_7_15695001 chr2R_15695001 RAL-309 396 chr2R 15710450 15710467 chr2R 15710695 15710712 4 245 2.5 3.5 3.0 1.0 262 chr2R 15710450 intergenic not near genes chr2R 15710581 intergenic not near genes chr2R 15710712 intergenic not near genes chr2R_4_15710001 chr2R_15710001 RAL-309 397 chr2R 15740503 15740516 chr2R 15740558 15740594 7 72 1.5 2.5 2.0 2.3 91 chr2R 15740503 intron CG30089 + chr2R 15740548 intron CG30089 + chr2R 15740594 intron CG30089 + chr2R_7_15740001 chr2R_15740001 RAL-309 398 chr2R 16054526 16054552 chr2R 16054603 16054630 6 74 3.0 2.0 2.5 1.7 104 chr2R 16054526 intron CG8405 + chr2R 16054578 intron CG8405 + chr2R 16054630 intron CG8405 + chr2R_6_16050001 chr2R_16050001 RAL-309 399 chr2R 16617070 16617090 chr2R 16617149 16617169 6 78 2.0 2.0 2.0 2.0 99 chr2R 16617070 intron CG5065 + chr2R 16617120 intron CG5065 + chr2R 16617169 intron CG5065 + chr2R_6_16615001 chr2R_16615001 RAL-309 400 chr2R 16732872 16732883 chr2R 16733042 16733053 4 170 0.0 3.5 1.8 1.4 181 chr2R 16732872 5` UTR CG30463 - chr2R 16732962 intergenic CG30463 - chr2R 16733053 intergenic CG30463 - chr2R_4_16730001 chr2R_16730001 RAL-309 401 chr2R 16737138 16737165 chr2R 16737238 16737265 14 94 4.5 3.5 4.0 2.8 127 chr2R 16737138 3` UTR CG43104 - chr2R 16737202 3` UTR CG43104 - chr2R 16737265 exon CG43104 - chr2R_14_16735001 chr2R_16735001 RAL-309 402 chr2R 16740887 16740919 chr2R 16740980 16741013 8 82 4.0 4.5 4.2 1.5 126 chr2R 16740887 intergenic not near genes chr2R 16740950 intergenic not near genes chr2R 16741013 intergenic not near genes chr2R_8_16740001 chr2R_16740001 RAL-309 403 chr2R 16775652 16775670 chr2R 16775916 16775930 5 261 0.5 1.5 1.0 2.5 278 chr2R 16775652 3` UTR Arp53D + chr2R 16775791 intergenic Arp53D + chr2R 16775930 intergenic Arp53D + chr2R_5_16775001 chr2R_16775001 RAL-309 404 chr2R 16808730 16808764 chr2R 16808879 16808913 7 147 1.0 4.5 2.8 1.8 183 chr2R 16808730 intergenic not near genes chr2R 16808822 intergenic not near genes chr2R 16808913 intergenic not near genes chr2R_7_16805001 chr2R_16805001 RAL-309 405 chr2R 16972267 16972295 chr2R 16972432 16972460 5 165 0.5 1.5 1.0 2.5 193 chr2R 16972267 intergenic not near genes chr2R 16972364 intergenic not near genes chr2R 16972460 intergenic not near genes chr2R_5_16970001 chr2R_16970001 RAL-309 406 chr2R 16973158 16973171 chr2R 16973423 16973442 6 274 0.5 6.5 3.5 1.3 284 chr2R 16973158 intergenic not near genes chr2R 16973300 intergenic not near genes chr2R 16973442 intergenic Cbp53E + chr2R_6_16970001 chr2R_16970001 RAL-309 407 chr2R 17161355 17161364 chr2R 17161562 17161562 4 205 2.5 0.0 1.2 1.8 207 chr2R 17161355 intergenic not near genes chr2R 17161458 intergenic not near genes chr2R 17161562 intergenic not near genes chr2R_4_17160001 chr2R_17160001 RAL-309 408 chr2R 17227090 17227115 chr2R 17227170 17227195 5 78 2.0 3.0 2.5 1.4 105 chr2R 17227090 intron mbl + chr2R 17227142 intron mbl + chr2R 17227195 intron mbl + chr2R_5_17225001 chr2R_17225001 RAL-309 409 chr2R 17236506 17236541 chr2R 17241710 17241743 copia 15 5202 3.0 3.0 3.0 3.8 5237 chr2R 17236506 intron mbl + chr2R 17239124 intron mbl + chr2R 17241743 intron mbl + chr2R_15_17235001 chr2R_17235001 RAL-309 410 chr2R 17459009 17459039 chr2R 17459090 17459124 13 85 5.0 1.5 3.2 3.1 115 chr2R 17459009 intron CG14478 + chr2R 17459066 intron CG14478 + chr2R 17459124 intron CG14478 + chr2R_13_17455001 chr2R_17455001 RAL-309 411 chr2R 17709988 17710110 chr2R 17710079 17710188 5 79 0.5 0.0 0.2 4.2 200 chr2R 17709988 intron CG6424 - chr2R 17710088 intron CG6424 - chr2R 17710188 intron CG6424 - chr2R_5_17710001 chr2R_17710001 RAL-309 412 chr2R 17784024 17784057 chr2R 17784265 17784265 pogo 7 235 1.5 2.0 1.8 2.5 241 chr2R 17784024 intergenic mir-31a - chr2R 17784144 intergenic mir-31a - chr2R 17784265 intergenic mir-31a - chr2R_7_17780001 chr2R_17780001 RAL-309 413 chr2R 18004942 18004957 chr2R 18005014 18005033 5 75 1.0 3.5 2.2 1.6 91 chr2R 18004942 intron dpr13 - chr2R 18004988 intron dpr13 - chr2R 18005033 intron dpr13 - chr2R_5_18000001 chr2R_18000001 RAL-309 414 chr2R 18021486 18021550 chr2R 18022033 18022037 6 498 13.5 12.0 12.8 0.4 551 chr2R 18021486 exon CG10910 + chr2R 18021762 exon CG10910 + chr2R 18022037 exon CG10910 + chr2R_6_18020001 chr2R_18020001 RAL-309 415 chr2R 18248607 18248617 chr2R 18248681 18248691 4 77 2.5 5.5 4.0 0.8 84 chr2R 18248607 intergenic not near genes chr2R 18248649 intergenic not near genes chr2R 18248691 intergenic not near genes chr2R_4_18245001 chr2R_18245001 RAL-309 416 chr2R 18291251 18291261 chr2R 18291321 18291337 4 76 4.0 1.5 2.8 1.1 86 chr2R 18291251 intron,intron sbb -,CG14502 + chr2R 18291294 intron,intron sbb -,CG14502 + chr2R 18291337 intron,intron sbb -,CG14502 + chr2R_4_18290001 chr2R_18290001 RAL-309 417 chr2R 18306847 18306874 chr2R 18307472 18307478 5 621 3.5 1.0 2.2 1.6 631 chr2R 18306847 intron sbb - chr2R 18307162 intron sbb - chr2R 18307478 intron sbb - chr2R_5_18305001 chr2R_18305001 RAL-309 418 chr2R 18308285 18308318 chr2R 18308390 18308424 9 106 2.5 2.0 2.2 2.8 139 chr2R 18308285 intron sbb - chr2R 18308354 intron sbb - chr2R 18308424 intron sbb - chr2R_9_18305001 chr2R_18305001 RAL-309 419 chr2R 18358387 18358420 chr2R 18372599 18372632 roo 12 14210 2.5 3.0 2.8 3.2 14245 chr2R 18358387 intergenic not near genes chr2R 18365510 intergenic not near genes chr2R 18372632 intergenic not near genes chr2R_12_18365001 chr2R_18365001 RAL-309 420 chr2R 18376740 18376764 chr2R 18376830 18376854 7 87 2.0 4.0 3.0 1.8 114 chr2R 18376740 intergenic not near genes chr2R 18376797 intergenic not near genes chr2R 18376854 intergenic not near genes chr2R_7_18375001 chr2R_18375001 RAL-309 421 chr2R 18402508 18402535 chr2R 18402596 18402618 9 83 3.0 4.5 3.8 1.9 110 chr2R 18402508 intergenic not near genes chr2R 18402563 intergenic not near genes chr2R 18402618 intergenic not near genes chr2R_9_18400001 chr2R_18400001 RAL-309 422 chr2R 18528194 18528222 chr2R 18528278 18528285 7 77 1.5 1.5 1.5 2.8 91 chr2R 18528194 intron CG10924 + chr2R 18528240 intron CG10924 + chr2R 18528285 intron CG10924 + chr2R_7_18525001 chr2R_18525001 RAL-309 423 chr2R 18575811 18575823 chr2R 18581984 18582010 3S18 7 6180 5.0 4.5 4.8 1.2 6199 chr2R 18575811 intron GEFmeso - chr2R 18578910 intron GEFmeso - chr2R 18582010 intron GEFmeso - chr2R_7_18575001 chr2R_18575001 RAL-309 424 chr2R 18590868 18590895 chr2R 18600019 18600047 roo 6 9151 3.0 2.5 2.8 1.6 9179 chr2R 18590868 intron GEFmeso - chr2R 18595458 intron GEFmeso - chr2R 18600047 intron GEFmeso - chr2R_6_18595001 chr2R_18595001 RAL-309 425 chr2R 18646411 18646435 chr2R 18646556 18646579 5 145 2.0 2.5 2.2 1.6 168 chr2R 18646411 intron SP2637 - chr2R 18646495 intron SP2637 - chr2R 18646579 intron SP2637 - chr2R_5_18645001 chr2R_18645001 RAL-309 426 chr2R 18678533 18678537 chr2R 18678652 18678657 5 120 2.5 1.0 1.8 1.8 124 chr2R 18678533 intergenic CG44434 -,CG44435 - chr2R 18678595 intergenic CG44434 -,CG44435 - chr2R 18678657 intergenic CG44434 -,CG44435 - chr2R_5_18675001 chr2R_18675001 RAL-309 427 chr2R 18981770 18981785 chr2R 18981851 18981860 6 80 3.0 0.5 1.8 2.1 90 chr2R 18981770 intergenic not near genes chr2R 18981815 intergenic not near genes chr2R 18981860 intergenic not near genes chr2R_6_18980001 chr2R_18980001 RAL-309 428 chr2R 18981786 18981799 chr2R 18981850 18981880 8 72 0.5 0.5 0.5 5.3 94 chr2R 18981786 intergenic not near genes chr2R 18981833 intergenic not near genes chr2R 18981880 intergenic not near genes chr2R_8_18980001 chr2R_18980001 RAL-309 429 chr2R 19183357 19183370 chr2R 19183432 19183446 6 75 2.5 6.0 4.2 1.2 89 chr2R 19183357 intron hppy + chr2R 19183402 intron hppy + chr2R 19183446 intron hppy + chr2R_6_19180001 chr2R_19180001 RAL-309 430 chr2R 19218834 19218846 chr2R 19227541 19227553 7 8708 24.0 19.5 21.8 0.3 8719 chr2R 19218834 intron hppy + chr2R 19223194 intron hppy + chr2R 19227553 exon CG7137 + chr2R_7_19220001 chr2R_19220001 RAL-309 431 chr2R 19218831 19218854 chr2R 19227554 19227567 4 8720 27.0 18.5 22.8 0.2 8736 chr2R 19218831 intron hppy + chr2R 19223199 intron hppy + chr2R 19227567 exon CG7137 + chr2R_4_19220001 chr2R_19220001 RAL-309 432 chr2R 19313958 19313988 chr2R 19314115 19314123 4 151 2.5 1.5 2.0 1.3 165 chr2R 19313958 intron Rgk1 - chr2R 19314040 intron Rgk1 - chr2R 19314123 intron Rgk1 - chr2R_4_19310001 chr2R_19310001 RAL-309 433 chr2R 19776593 19776628 chr2R 19779916 19779951 jockey 7 3318 4.0 2.5 3.2 1.7 3358 chr2R 19776593 intergenic not near genes chr2R 19778272 intergenic not near genes chr2R 19779951 intergenic not near genes chr2R_7_19775001 chr2R_19775001 RAL-309 434 chr2R 19847672 19847689 chr2R 19847752 19847773 6 84 1.5 2.5 2.0 2.0 101 chr2R 19847672 intergenic not near genes chr2R 19847722 intergenic not near genes chr2R 19847773 intergenic not near genes chr2R_6_19845001 chr2R_19845001 RAL-309 435 chr2R 19957428 19957463 chr2R 19962630 19962660 copia 7 5198 2.5 0.5 1.5 2.8 5232 chr2R 19957428 intergenic CG44623 + chr2R 19960044 intergenic not near genes chr2R 19962660 intergenic not near genes chr2R_7_19960001 chr2R_19960001 RAL-309 436 chr2R 20031911 20031940 chr2R 20032007 20032036 6 96 2.0 2.5 2.2 1.9 125 chr2R 20031911 intergenic not near genes chr2R 20031974 intergenic not near genes chr2R 20032036 intergenic not near genes chr2R_6_20030001 chr2R_20030001 RAL-309 437 chr2R 20118879 20118896 chr2R 20118967 20118980 6 85 3.5 1.0 2.2 1.9 101 chr2R 20118879 intergenic not near genes chr2R 20118930 intergenic not near genes chr2R 20118980 intergenic not near genes chr2R_6_20115001 chr2R_20115001 RAL-309 438 chr2R 20196756 20196766 chr2R 20196864 20196873 5 108 2.5 0.0 1.2 2.3 117 chr2R 20196756 intergenic not near genes chr2R 20196814 intergenic not near genes chr2R 20196873 intergenic not near genes chr2R_5_20195001 chr2R_20195001 RAL-309 439 chr2R 20205032 20205069 chr2R 20205108 20205111 5 60 2.5 2.5 2.5 1.4 79 chr2R 20205032 intergenic not near genes chr2R 20205072 intergenic not near genes chr2R 20205111 intergenic not near genes chr2R_5_20205001 chr2R_20205001 RAL-309 440 chr2R 20523044 20523069 chr2R 20523155 20523180 10 110 2.5 2.5 2.5 2.9 136 chr2R 20523044 intergenic not near genes chr2R 20523112 intergenic not near genes chr2R 20523180 intergenic not near genes chr2R_10_20520001 chr2R_20520001 RAL-309 441 chr2R 20739449 20739477 chr2R 20744210 20744242 F-element 6 4763 5.5 2.5 4.0 1.2 4793 chr2R 20739449 intron dpr + chr2R 20741846 intron dpr + chr2R 20744242 intron dpr + chr2R_6_20740001 chr2R_20740001 RAL-309 442 chr2R 20863131 20863140 chr2R 20863215 20863221 4 84 4.0 4.5 4.2 0.8 90 chr2R 20863131 intergenic not near genes chr2R 20863176 intergenic not near genes chr2R 20863221 intergenic not near genes chr2R_4_20860001 chr2R_20860001 RAL-309 443 chr2R 20967025 20967057 chr2R 20967102 20967108 5 67 2.0 0.0 1.0 2.5 83 chr2R 20967025 intergenic not near genes chr2R 20967066 intergenic not near genes chr2R 20967108 intergenic not near genes chr2R_5_20965001 chr2R_20965001 RAL-309 444 chr2R 21045660 21045690 chr2R 21045958 21045986 8 298 2.0 2.5 2.2 2.5 326 chr2R 21045660 intergenic not near genes chr2R 21045823 intergenic not near genes chr2R 21045986 intergenic not near genes chr2R_8_21045001 chr2R_21045001 RAL-309 445 chr2R 21578916 21578944 chr2R 21578993 21579012 6 73 1.5 2.0 1.8 2.1 96 chr2R 21578916 intergenic not near genes chr2R 21578964 intergenic not near genes chr2R 21579012 intergenic not near genes chr2R_6_21575001 chr2R_21575001 RAL-309 446 chr2R 21642008 21642032 chr2R 21642078 21642113 5 73 0.5 1.0 0.8 2.8 105 chr2R 21642008 intergenic not near genes chr2R 21642060 intergenic not near genes chr2R 21642113 intergenic not near genes chr2R_5_21640001 chr2R_21640001 RAL-309 447 chr2R 21753086 21753113 chr2R 21753567 21753598 roo 12 484 1.0 3.5 2.2 3.8 512 chr2R 21753086 intergenic not near genes chr2R 21753342 intergenic not near genes chr2R 21753598 intergenic not near genes chr2R_12_21750001 chr2R_21750001 RAL-309 448 chr2R 21857349 21857372 chr2R 21857437 21857460 5 90 2.0 2.0 2.0 1.7 111 chr2R 21857349 intergenic not near genes chr2R 21857404 intergenic not near genes chr2R 21857460 intergenic not near genes chr2R_5_21855001 chr2R_21855001 RAL-309 449 chr2R 21886131 21886166 chr2R 21886210 21886236 8 77 3.0 0.5 1.8 2.9 105 chr2R 21886131 intron Fili + chr2R 21886184 intron Fili + chr2R 21886236 intron Fili + chr2R_8_21885001 chr2R_21885001 RAL-309 450 chr2R 21919889 21919906 chr2R 21919969 21919994 4 86 2.0 2.0 2.0 1.3 105 chr2R 21919889 intron Fili + chr2R 21919942 intron Fili + chr2R 21919994 intron Fili + chr2R_4_21915001 chr2R_21915001 RAL-309 451 chr2R 21932260 21932281 chr2R 21932337 21932359 4 78 1.5 3.0 2.2 1.2 99 chr2R 21932260 intron Fili + chr2R 21932310 intron Fili + chr2R 21932359 intron Fili + chr2R_4_21930001 chr2R_21930001 RAL-309 452 chr2R 22003087 22003114 chr2R 22003173 22003174 5 81 3.0 2.5 2.8 1.3 87 chr2R 22003087 intron CG34370 - chr2R 22003130 intron CG34370 - chr2R 22003174 intron CG34370 - chr2R_5_22000001 chr2R_22000001 RAL-309 453 chr2R 22004296 22004318 chr2R 22004390 22004411 5 94 2.5 0.0 1.2 2.3 115 chr2R 22004296 intron CG34370 - chr2R 22004354 intron CG34370 - chr2R 22004411 intron CG34370 - chr2R_5_22000001 chr2R_22000001 RAL-309 454 chr2R 22072685 22072713 chr2R 22072769 22072797 7 82 1.5 3.0 2.2 2.2 112 chr2R 22072685 intron CG11474 - chr2R 22072741 intron CG11474 - chr2R 22072797 exon CG11474 - chr2R_7_22070001 chr2R_22070001 RAL-309 455 chr2R 22182919 22182935 chr2R 22183002 22183019 4 84 0.0 1.0 0.5 2.7 100 chr2R 22182919 intergenic CG11170 -,MED16 +,CG11275 + chr2R 22182969 intergenic CG11170 -,MED16 +,CG11275 + chr2R 22183019 intergenic MED16 +,CG11170 -,CG11275 + chr2R_4_22180001 chr2R_22180001 RAL-309 456 chr2R 22248842 22248875 chr2R 22248919 22248952 9 74 5.0 3.0 4.0 1.8 110 chr2R 22248842 intron dve + chr2R 22248897 intron dve + chr2R 22248952 intron dve + chr2R_9_22245001 chr2R_22245001 RAL-309 457 chr2R 22349697 22349706 chr2R 22351472 22351489 jockey 5 1780 7.0 2.0 4.5 0.9 1792 chr2R 22349697 intron Liprin-gamma - chr2R 22350593 intron Liprin-gamma - chr2R 22351489 intron Liprin-gamma - chr2R_5_22350001 chr2R_22350001 RAL-309 458 chr2R 22465322 22465347 chr2R 22465521 22465527 BS 5 195 2.5 2.0 2.2 1.6 205 chr2R 22465322 intron CG10384 + chr2R 22465424 intron CG10384 + chr2R 22465527 intron CG10384 + chr2R_5_22465001 chr2R_22465001 RAL-309 459 chr2R 22499858 22499888 chr2R 22499934 22499959 6 75 0.0 6.0 3.0 1.5 101 chr2R 22499858 intron px - chr2R 22499908 intron px - chr2R 22499959 intron px - chr2R_6_22495001 chr2R_22495001 RAL-309 460 chr2R 22525752 22525785 chr2R 22529307 22529338 jockey 8 3551 1.5 1.5 1.5 3.2 3586 chr2R 22525752 intron px - chr2R 22527545 intron px - chr2R 22529338 intron px - chr2R_8_22525001 chr2R_22525001 RAL-309 461 chr2R 22545619 22545627 chr2R 22545697 22545706 4 78 2.5 1.0 1.8 1.4 87 chr2R 22545619 intron px - chr2R 22545662 intron px - chr2R 22545706 intron px - chr2R_4_22545001 chr2R_22545001 RAL-309 462 chr2R 22575666 22575691 chr2R 22575745 22575769 6 79 4.0 4.5 4.2 1.2 103 chr2R 22575666 intron dnr1 - chr2R 22575718 intron dnr1 - chr2R 22575769 intron dnr1 - chr2R_6_22575001 chr2R_22575001 RAL-309 463 chr2R 22774960 22774997 chr2R 22775379 22775416 jockey 8 419 3.5 3.0 3.2 1.9 456 chr2R 22774960 intron CG42260 - chr2R 22775188 intron CG42260 - chr2R 22775416 intron CG42260 - chr2R_8_22775001 chr2R_22775001 RAL-309 464 chr2R 22781952 22781986 chr2R 22782139 22782169 11 179 2.5 2.0 2.2 3.4 217 chr2R 22781952 intron CG42260 - chr2R 22782060 intron CG42260 - chr2R 22782169 intron CG42260 - chr2R_11_22780001 chr2R_22780001 RAL-309 465 chr2R 22988629 22988653 chr2R 22988708 22988717 4 76 2.5 1.5 2.0 1.3 88 chr2R 22988629 intron twi + chr2R 22988673 intron twi + chr2R 22988717 intron twi + chr2R_4_22985001 chr2R_22985001 RAL-309 466 chr2R 23029622 23029630 chr2R 23029699 23029707 5 77 3.0 6.5 4.8 0.9 85 chr2R 23029622 intron,intron twi +,CG42741 - chr2R 23029664 intron,intron twi +,CG42741 - chr2R 23029707 intron,intron twi +,CG42741 - chr2R_5_23025001 chr2R_23025001 RAL-309 467 chr2R 23155719 23155753 chr2R 23155842 23155879 15 125 1.5 2.5 2.0 5.0 160 chr2R 23155719 intron CG9899 + chr2R 23155799 intron CG9899 + chr2R 23155879 intron CG9899 + chr2R_15_23155001 chr2R_23155001 RAL-309 468 chr2R 23350514 23350542 chr2R 23350641 23350663 6 126 1.0 1.5 1.2 2.7 149 chr2R 23350514 intergenic not near genes chr2R 23350588 intergenic not near genes chr2R 23350663 intergenic not near genes chr2R_6_23350001 chr2R_23350001 RAL-309 469 chr2R 23356278 23356305 chr2R 23356367 23356387 6 85 1.5 2.0 1.8 2.1 109 chr2R 23356278 3` UTR Rpi + chr2R 23356332 3` UTR Rpi + chr2R 23356387 3` UTR,3` UTR Rpi +,CG3500 - chr2R_6_23355001 chr2R_23355001 RAL-309 470 chr2R 23427759 23427793 chr2R 23427900 23427935 10 140 1.5 1.5 1.5 4.0 176 chr2R 23427759 intron CG9815 - chr2R 23427847 intron CG9815 - chr2R 23427935 intron CG9815 - chr2R_10_23425001 chr2R_23425001 RAL-309 471 chr2R 23437236 23437245 chr2R 23437313 23437315 4 74 3.0 10.5 6.8 0.5 79 chr2R 23437236 intergenic not near genes chr2R 23437276 intergenic not near genes chr2R 23437315 intergenic not near genes chr2R_4_23435001 chr2R_23435001 RAL-309 472 chr2R 23522414 23522445 chr2R 23522492 23522506 5 70 3.0 2.5 2.8 1.3 92 chr2R 23522414 intron RabX1 - chr2R 23522460 intron RabX1 - chr2R 23522506 intron RabX1 - chr2R_5_23520001 chr2R_23520001 RAL-309 473 chr2R 23559867 23559898 chr2R 23560155 23560184 7 287 1.5 1.5 1.5 2.8 317 chr2R 23559867 exon ItgalphaPS5 + chr2R 23560026 intron ItgalphaPS5 + chr2R 23560184 exon ItgalphaPS5 + chr2R_7_23560001 chr2R_23560001 RAL-309 474 chr2R 23636719 23636738 chr2R 23636797 23636816 7 77 1.5 2.0 1.8 2.5 97 chr2R 23636719 intron retn + chr2R 23636768 intron retn + chr2R 23636816 intron retn + chr2R_7_23635001 chr2R_23635001 RAL-309 475 chr2R 23684135 23684158 chr2R 23684231 23684250 12 94 3.5 3.5 3.5 2.7 115 chr2R 23684135 exon St3 + chr2R 23684192 intron St3 + chr2R 23684250 exon St3 + chr2R_12_23680001 chr2R_23680001 RAL-309 476 chr2R 23914320 23914330 chr2R 23921943 23921954 412 6 7623 3.0 6.5 4.8 1.0 7634 chr2R 23914320 exon kcc + chr2R 23918137 intron kcc + chr2R 23921954 intron kcc + chr2R_6_23915001 chr2R_23915001 RAL-309 477 chr2R 24031384 24031410 chr2R 24031468 24031494 9 82 3.0 0.5 1.8 3.2 110 chr2R 24031384 5` UTR CG30172 - chr2R 24031439 intergenic CG30172 -,Chi - chr2R 24031494 intergenic Chi -,CG30172 - chr2R_9_24030001 chr2R_24030001 RAL-309 478 chr2R 24177245 24177258 chr2R 24184724 24184743 412 5 7484 2.0 2.5 2.2 1.6 7498 chr2R 24177245 3` UTR Nop60B + chr2R 24180994 intron Nop60B + chr2R 24184743 3` UTR Nop60B + chr2R_5_24180001 chr2R_24180001 RAL-309 479 chr2R 24353433 24353460 chr2R 24361795 24361822 roo 7 8362 1.5 3.5 2.5 2.0 8389 chr2R 24353433 intron,intron bs +,CR44811 - chr2R 24357628 intron,intron bs +,CR44811 - chr2R 24361822 intron,intron bs +,CR44811 - chr2R_7_24355001 chr2R_24355001 RAL-309 480 chr2R 24383833 24383857 chr2R 24383914 24383934 5 79 1.0 4.0 2.5 1.4 101 chr2R 24383833 intron mAChR-A - chr2R 24383884 intron mAChR-A - chr2R 24383934 exon mAChR-A - chr2R_5_24380001 chr2R_24380001 RAL-309 481 chr2R 24621064 24621070 chr2R 24621140 24621141 5 82 1.0 4.5 2.8 1.3 77 chr2R 24621064 exon CG13594 - chr2R 24621102 intron CG13594 - chr2R 24621141 intron CG13594 - chr2R_5_24620001 chr2R_24620001 RAL-309 482 chr2R 24629139 24629177 chr2R 24629241 24629276 13 97 4.5 2.0 3.2 3.1 137 chr2R 24629139 intron CG13594 - chr2R 24629208 intron CG13594 - chr2R 24629276 intron CG13594 - chr2R_13_24625001 chr2R_24625001 RAL-309 483 chr2R 24647587 24647618 chr2R 24655144 24655174 412 5 7551 3.0 4.5 3.8 1.0 7587 chr2R 24647587 intergenic not near genes chr2R 24651380 intergenic not near genes chr2R 24655174 intergenic not near genes chr2R_5_24650001 chr2R_24650001 RAL-309 484 chr2R 24719811 24719826 chr2R 24719918 24719938 4 108 2.5 6.5 4.5 0.7 127 chr2R 24719811 intron Mid1 - chr2R 24719874 intron Mid1 - chr2R 24719938 intron Mid1 - chr2R_4_24715001 chr2R_24715001 RAL-309 485 chr2R 24727889 24727918 chr2R 24735396 24735426 mdg1 7 7507 0.0 2.5 1.2 3.2 7537 chr2R 24727889 intron Mid1 - chr2R 24731658 intron Mid1 - chr2R 24735426 intron Mid1 - chr2R_7_24730001 chr2R_24730001 RAL-309 486 chr2R 24763623 24763637 chr2R 24765592 24765613 G2 4 1974 5.0 4.0 4.5 0.7 1990 chr2R 24763623 exon CG3894 + chr2R 24764618 intron CG3894 + chr2R 24765613 exon CG3894 + chr2R_4_24760001 chr2R_24760001 RAL-309 487 chr2R 24798401 24798433 chr2R 24798734 24798745 13 329 2.0 5.0 3.5 2.9 344 chr2R 24798401 intron CG12849 + chr2R 24798573 exon CG12849 + chr2R 24798745 intergenic CG3611 +,CG12849 + chr2R_13_24795001 chr2R_24795001 RAL-309 488 chr2R 24864927 24864958 chr2R 24865009 24865036 9 77 1.5 1.5 1.5 3.6 109 chr2R 24864927 intergenic not near genes chr2R 24864982 intergenic not near genes chr2R 24865036 intergenic not near genes chr2R_9_24860001 chr2R_24860001 RAL-309 489 chr2R 25061339 25061364 chr2R 25061421 25061429 9 77 3.0 0.5 1.8 3.2 90 chr2R 25061339 intergenic not near genes chr2R 25061384 intergenic not near genes chr2R 25061429 intergenic not near genes chr2R_9_25060001 chr2R_25060001 RAL-309 490 chr2R 25101278 25101305 chr2R 25101380 25101381 5 97 3.0 2.5 2.8 1.3 103 chr2R 25101278 intron lov - chr2R 25101330 intron lov - chr2R 25101381 intron lov - chr2R_5_25100001 chr2R_25100001 RAL-309 491 chr2R 25102543 25102555 chr2R 25102711 25102724 6 169 1.0 3.5 2.2 1.9 181 chr2R 25102543 intron lov - chr2R 25102634 intron lov - chr2R 25102724 intron lov - chr2R_6_25100001 chr2R_25100001 RAL-309 492 chr2R 25104789 25104809 chr2R 25104900 25104923 4 119 1.0 1.5 1.2 1.8 134 chr2R 25104789 intron lov - chr2R 25104856 intron lov - chr2R 25104923 intron lov - chr2R_4_25100001 chr2R_25100001 RAL-309 493 chr2R 25131017 25131033 chr2R 25131094 25131110 5 76 1.0 1.0 1.0 2.5 93 chr2R 25131017 intron lov - chr2R 25131064 intron lov - chr2R 25131110 intron lov - chr2R_5_25130001 chr2R_25130001 RAL-309 494 chr3L 93799 93811 chr3L 93880 93892 4 80 5.0 5.5 5.2 0.6 93 chr3L 93799 intergenic not near genes chr3L 93846 intergenic not near genes chr3L 93892 intergenic not near genes chr3L_4_90001 chr3L_90001 RAL-309 495 chr3L 106000 106023 chr3L 106129 106134 4 124 2.0 1.0 1.5 1.6 134 chr3L 106000 intergenic not near genes chr3L 106067 intergenic not near genes chr3L 106134 intergenic not near genes chr3L_4_105001 chr3L_105001 RAL-309 496 chr3L 110212 110244 chr3L 119379 119411 roo 10 9166 1.5 2.0 1.8 3.6 9199 chr3L 110212 intergenic not near genes chr3L 114812 intergenic not near genes chr3L 119411 intergenic not near genes chr3L_10_110001 chr3L_110001 RAL-309 497 chr3L 402687 402714 chr3L 409740 409749 297 5 7047 7.5 4.0 5.8 0.7 7062 chr3L 402687 intergenic not near genes chr3L 406218 intergenic not near genes chr3L 409749 intergenic not near genes chr3L_5_405001 chr3L_405001 RAL-309 498 chr3L 459988 459996 chr3L 460065 460073 5 77 3.0 3.0 3.0 1.2 85 chr3L 459988 intron klar - chr3L 460030 intron klar - chr3L 460073 intron klar - chr3L_5_460001 chr3L_460001 RAL-309 499 chr3L 459997 460001 chr3L 460060 460065 4 66 2.5 3.0 2.8 1.1 68 chr3L 459997 intron klar - chr3L 460031 intron klar - chr3L 460065 intron klar - chr3L_4_460001 chr3L_460001 RAL-309 500 chr3L 649732 649743 chr3L 649809 649834 7 85 3.0 3.0 3.0 1.8 102 chr3L 649732 intron Gale + chr3L 649783 intron Gale + chr3L 649834 intron Gale + chr3L_7_645001 chr3L_645001 RAL-309 501 chr3L 821638 821664 chr3L 826601 826627 10 4964 26.5 28.0 27.2 0.4 4989 chr3L 821638 intergenic CR43883 + chr3L 824132 intergenic not near genes chr3L 826627 intergenic CG13900 -,CR45184 -,snoRNA:Me28S-C788b - chr3L_10_820001 chr3L_820001 RAL-309 502 chr3L 843734 843750 chr3L 843802 843815 5 75 4.5 0.0 2.2 1.6 81 chr3L 843734 intergenic Gr61a +,CG13889 + chr3L 843774 intergenic Gr61a +,CG13889 + chr3L 843815 intergenic CG13889 +,Gr61a + chr3L_5_840001 chr3L_840001 RAL-309 503 chr3L 858005 858031 chr3L 866486 866511 Tirant 6 8478 1.5 3.0 2.2 1.9 8506 chr3L 858005 intergenic not near genes chr3L 862258 intergenic not near genes chr3L 866511 5` UTR CG12502 + chr3L_6_860001 chr3L_860001 RAL-309 504 chr3L 925179 925189 chr3L 932605 932614 mdg1 8 7426 6.0 4.0 5.0 1.3 7435 chr3L 925179 intron Glut1 + chr3L 928896 intron Glut1 + chr3L 932614 intron Glut1 + chr3L_8_925001 chr3L_925001 RAL-309 505 chr3L 925195 925202 chr3L 932603 932628 mdg1 4 7420 4.5 4.0 4.2 0.8 7433 chr3L 925195 intron Glut1 + chr3L 928912 intron Glut1 + chr3L 932628 intron Glut1 + chr3L_4_925001 chr3L_925001 RAL-309 506 chr3L 939773 939800 chr3L 940894 940921 jockey 7 1121 3.0 1.0 2.0 2.3 1148 chr3L 939773 intron Glut1 + chr3L 940347 intron Glut1 + chr3L 940921 intron Glut1 + chr3L_7_940001 chr3L_940001 RAL-309 507 chr3L 1045551 1045555 chr3L 1045649 1045652 4 98 8.0 4.5 6.2 0.6 101 chr3L 1045551 intron bab1 - chr3L 1045602 intron bab1 - chr3L 1045652 intron bab1 - chr3L_4_1045001 chr3L_1045001 RAL-309 508 chr3L 1045563 1045579 chr3L 1045647 1045677 8 96 3.5 3.5 3.5 1.8 114 chr3L 1045563 intron bab1 - chr3L 1045620 intron bab1 - chr3L 1045677 intron bab1 - chr3L_8_1045001 chr3L_1045001 RAL-309 509 chr3L 1109632 1109667 chr3L 1109720 1109754 6 85 1.0 1.5 1.2 2.7 122 chr3L 1109632 intergenic not near genes chr3L 1109693 intergenic not near genes chr3L 1109754 intergenic not near genes chr3L_6_1105001 chr3L_1105001 RAL-309 510 chr3L 1154133 1154160 chr3L 1163283 1163309 roo 4 9150 1.5 1.0 1.2 1.8 9176 chr3L 1154133 intron bab2 - chr3L 1158721 intron bab2 - chr3L 1163309 intron bab2 - chr3L_4_1155001 chr3L_1155001 RAL-309 511 chr3L 1219594 1219617 chr3L 1227327 1227342 412 4 7730 6.0 4.0 5.0 0.7 7748 chr3L 1219594 intron mwh + chr3L 1223468 intron mwh + chr3L 1227342 intron mwh + chr3L_4_1220001 chr3L_1220001 RAL-309 512 chr3L 1310981 1310988 chr3L 1315854 1315869 6 4867 17.5 22.0 19.8 0.3 4888 chr3L 1310981 exon CG2469 + chr3L 1313425 intergenic CG9186 -,CG9153 + chr3L 1315869 exon CG9153 + chr3L_6_1310001 chr3L_1310001 RAL-309 513 chr3L 1347158 1347179 chr3L 1347243 1347253 6 82 4.5 2.5 3.5 1.3 95 chr3L 1347158 intron Ptp61F - chr3L 1347206 intron Ptp61F - chr3L 1347253 intron Ptp61F - chr3L_6_1345001 chr3L_1345001 RAL-309 514 chr3L 1479995 1480005 chr3L 1480147 1480157 4 152 2.5 2.5 2.5 1.1 162 chr3L 1479995 intron stet - chr3L 1480076 intron stet - chr3L 1480157 intron stet - chr3L_4_1480001 chr3L_1480001 RAL-309 515 chr3L 1505996 1506032 chr3L 1513593 1513629 17.6 11 7597 5.0 2.5 3.8 2.3 7633 chr3L 1505996 intron,intron Psa +,cue - chr3L 1509812 intron,intron Psa +,cue - chr3L 1513629 intron,intron Psa +,cue - chr3L_11_1505001 chr3L_1505001 RAL-309 516 chr3L 1809260 1809294 chr3L 1809345 1809379 6 84 1.5 0.5 1.0 3.0 119 chr3L 1809260 intergenic not near genes chr3L 1809320 intergenic not near genes chr3L 1809379 intergenic not near genes chr3L_6_1805001 chr3L_1805001 RAL-309 517 chr3L 1848652 1848668 chr3L 1848730 1848745 5 77 1.5 0.5 1.0 2.5 93 chr3L 1848652 intergenic not near genes chr3L 1848698 intergenic not near genes chr3L 1848745 intergenic not near genes chr3L_5_1845001 chr3L_1845001 RAL-309 518 chr3L 2143919 2143928 chr3L 2143976 2143991 5 72 5.5 0.0 2.8 1.3 72 chr3L 2143919 intron zormin - chr3L 2143955 intron zormin - chr3L 2143991 intron zormin - chr3L_5_2140001 chr3L_2140001 RAL-309 519 chr3L 2168773 2168796 chr3L 2168864 2168866 5 87 4.5 3.0 3.8 1.0 93 chr3L 2168773 exon CG15879 - chr3L 2168820 intron CG15879 - chr3L 2168866 intron CG15879 - chr3L_5_2165001 chr3L_2165001 RAL-309 520 chr3L 2308002 2308034 chr3L 2308108 2308138 7 105 1.5 4.5 3.0 1.8 136 chr3L 2308002 intergenic not near genes chr3L 2308070 intergenic not near genes chr3L 2308138 intergenic not near genes chr3L_7_2305001 chr3L_2305001 RAL-309 521 chr3L 2414474 2414490 chr3L 2414628 2414644 5 154 1.5 1.5 1.5 2.0 170 chr3L 2414474 intron CG45186 + chr3L 2414559 intron CG45186 + chr3L 2414644 intron CG45186 + chr3L_5_2410001 chr3L_2410001 RAL-309 522 chr3L 2447516 2447537 chr3L 2456672 2456693 roo 8 9156 4.0 5.5 4.8 1.4 9177 chr3L 2447516 intron CG45186 + chr3L 2452104 intron CG45186 + chr3L 2456693 intron CG45186 + chr3L_8_2450001 chr3L_2450001 RAL-309 523 chr3L 2927841 2927863 chr3L 2936118 2936140 Tirant 5 8274 1.0 1.0 1.0 2.5 8299 chr3L 2927841 intron Shab + chr3L 2931990 intron Shab + chr3L 2936140 intron Shab + chr3L_5_2930001 chr3L_2930001 RAL-309 524 chr3L 3077372 3077401 chr3L 3077518 3077547 7 147 6.5 2.0 4.2 1.3 175 chr3L 3077372 intron CG11486 + chr3L 3077460 intron CG11486 + chr3L 3077547 intron CG11486 + chr3L_7_3075001 chr3L_3075001 RAL-309 525 chr3L 3281458 3281474 chr3L 3281937 3281970 Doc 9 490 2.5 7.0 4.8 1.6 512 chr3L 3281458 intron CG12017 + chr3L 3281714 intron CG12017 + chr3L 3281970 intron CG12017 + chr3L_9_3280001 chr3L_3280001 RAL-309 526 chr3L 3436299 3436314 chr3L 3436372 3436378 4 70 1.0 2.0 1.5 1.6 79 chr3L 3436299 intron eIF5B - chr3L 3436338 intron eIF5B - chr3L 3436378 intron eIF5B - chr3L_4_3435001 chr3L_3435001 RAL-309 527 chr3L 3475076 3475113 chr3L 3475520 3475557 jockey 7 443 0.5 3.0 1.8 2.5 481 chr3L 3475076 intron CG42324 + chr3L 3475316 intron CG42324 + chr3L 3475557 intron CG42324 + chr3L_7_3475001 chr3L_3475001 RAL-309 528 chr3L 3484286 3484318 chr3L 3484378 3484410 8 92 0.5 3.5 2.0 2.7 124 chr3L 3484286 intron,exon CG42324 +,CG43074 - chr3L 3484348 intron,exon CG42324 +,CG43074 - chr3L 3484410 intron,intron CG42324 +,CG43074 - chr3L_8_3480001 chr3L_3480001 RAL-309 529 chr3L 3581765 3581778 chr3L 3581850 3581863 6 84 0.0 3.0 1.5 2.4 98 chr3L 3581765 intron Eip63E + chr3L 3581814 intron Eip63E + chr3L 3581863 intron Eip63E + chr3L_6_3580001 chr3L_3580001 RAL-309 530 chr3L 3619398 3619430 chr3L 3619492 3619523 8 90 1.0 0.5 0.8 4.4 125 chr3L 3619398 intergenic not near genes chr3L 3619460 intergenic not near genes chr3L 3619523 intergenic not near genes chr3L_8_3615001 chr3L_3615001 RAL-309 531 chr3L 3768961 3768976 chr3L 3769062 3769077 4 100 2.0 2.5 2.2 1.2 116 chr3L 3768961 intron CG32264 - chr3L 3769019 intron CG32264 - chr3L 3769077 exon CG32264 - chr3L_4_3765001 chr3L_3765001 RAL-309 532 chr3L 4132953 4132969 chr3L 4133051 4133052 5 94 1.0 0.0 0.5 3.3 99 chr3L 4132953 intron ens - chr3L 4133002 intron ens - chr3L 4133052 intron ens - chr3L_5_4130001 chr3L_4130001 RAL-309 533 chr3L 4208742 4208766 chr3L 4208816 4208844 8 77 0.0 0.5 0.2 6.7 102 chr3L 4208742 intron,intron CG43367 +,Cpr64Aa - chr3L 4208793 intron,intron CG43367 +,Cpr64Aa - chr3L 4208844 intron,intron CG43367 +,Cpr64Aa - chr3L_8_4205001 chr3L_4205001 RAL-309 534 chr3L 4416023 4416056 chr3L 4416104 4416137 10 72 4.0 5.0 4.5 1.8 114 chr3L 4416023 intron DOR + chr3L 4416080 intron DOR + chr3L 4416137 intron DOR + chr3L_10_4415001 chr3L_4415001 RAL-309 535 chr3L 4519428 4519432 chr3L 4519496 4519509 4 75 9.5 1.0 5.2 0.6 81 chr3L 4519428 intron Tie - chr3L 4519468 intron Tie - chr3L 4519509 intron Tie - chr3L_4_4515001 chr3L_4515001 RAL-309 536 chr3L 4519440 4519449 chr3L 4519495 4519526 5 71 4.0 1.0 2.5 1.4 86 chr3L 4519440 intron Tie - chr3L 4519483 intron Tie - chr3L 4519526 intron Tie - chr3L_5_4515001 chr3L_4515001 RAL-309 537 chr3L 4529676 4529699 chr3L 4530686 4530714 5 1012 1.5 1.5 1.5 2.0 1038 chr3L 4529676 intron Tie - chr3L 4530195 intron Tie - chr3L 4530714 intron Tie - chr3L_5_4530001 chr3L_4530001 RAL-309 538 chr3L 4657829 4657861 chr3L 4657948 4657981 5 111 2.5 0.0 1.2 2.3 152 chr3L 4657829 intron axo - chr3L 4657905 intron axo - chr3L 4657981 intron axo - chr3L_5_4655001 chr3L_4655001 RAL-309 539 chr3L 4657968 4657984 chr3L 4658430 4658446 6 461 0.0 2.0 1.0 3.0 478 chr3L 4657968 intron axo - chr3L 4658207 intron axo - chr3L 4658446 intron axo - chr3L_6_4655001 chr3L_4655001 RAL-309 540 chr3L 4748701 4748728 chr3L 4748792 4748819 4 90 5.5 1.0 3.2 1.0 118 chr3L 4748701 intron RhoGEF64C + chr3L 4748760 intron RhoGEF64C + chr3L 4748819 intron RhoGEF64C + chr3L_4_4745001 chr3L_4745001 RAL-309 541 chr3L 4858331 4858334 chr3L 4858402 4858423 6 85 2.5 8.0 5.2 1.0 92 chr3L 4858331 intergenic not near genes chr3L 4858377 intergenic not near genes chr3L 4858423 intergenic not near genes chr3L_6_4855001 chr3L_4855001 RAL-309 542 chr3L 4990745 4990777 chr3L 4990858 4990876 6 107 3.0 5.0 4.0 1.2 131 chr3L 4990745 intron Con - chr3L 4990810 intron Con - chr3L 4990876 intron Con - chr3L_6_4990001 chr3L_4990001 RAL-309 543 chr3L 5306674 5306684 chr3L 5306763 5306774 5 90 0.5 1.0 0.8 2.8 100 chr3L 5306674 intergenic not near genes chr3L 5306724 intergenic not near genes chr3L 5306774 intergenic not near genes chr3L_5_5305001 chr3L_5305001 RAL-309 544 chr3L 5388203 5388233 chr3L 5388527 5388543 9 322 5.0 3.5 4.2 1.7 340 chr3L 5388203 intergenic not near genes chr3L 5388373 intergenic not near genes chr3L 5388543 intergenic not near genes chr3L_9_5385001 chr3L_5385001 RAL-309 545 chr3L 5788702 5788741 chr3L 5788783 5788820 7 80 3.5 3.0 3.2 1.7 118 chr3L 5788702 intergenic not near genes chr3L 5788761 intergenic not near genes chr3L 5788820 intergenic not near genes chr3L_7_5785001 chr3L_5785001 RAL-309 546 chr3L 5926318 5926344 chr3L 5926502 5926509 BS 7 183 2.0 1.0 1.5 2.8 191 chr3L 5926318 intron Vap-33B + chr3L 5926414 intron Vap-33B + chr3L 5926509 intron Vap-33B + chr3L_7_5925001 chr3L_5925001 RAL-309 547 chr3L 5980594 5980617 chr3L 5980681 5980685 4 82 4.0 4.5 4.2 0.8 91 chr3L 5980594 intergenic not near genes chr3L 5980640 intergenic not near genes chr3L 5980685 intergenic not near genes chr3L_4_5980001 chr3L_5980001 RAL-309 548 chr3L 6040373 6040392 chr3L 6042729 6042748 Doc 6 2354 3.0 1.0 2.0 2.0 2375 chr3L 6040373 intergenic Jon65Aiv + chr3L 6041560 intergenic not near genes chr3L 6042748 intergenic not near genes chr3L_6_6040001 chr3L_6040001 RAL-309 549 chr3L 6142414 6142444 chr3L 6142559 6142585 10 144 2.0 3.0 2.5 2.9 171 chr3L 6142414 intergenic Cpr65Aw - chr3L 6142500 intergenic Cpr65Aw - chr3L 6142585 intergenic Cpr65Aw - chr3L_10_6140001 chr3L_6140001 RAL-309 550 chr3L 6220922 6220934 chr3L 6230074 6230086 roo 5 9151 4.5 5.0 4.8 0.9 9164 chr3L 6220922 5` UTR pncr008:3L + chr3L 6225504 intergenic not near genes chr3L 6230086 intergenic not near genes chr3L_5_6225001 chr3L_6225001 RAL-309 551 chr3L 6368968 6368989 chr3L 6369271 6369291 10 302 3.0 2.5 2.8 2.6 323 chr3L 6368968 intergenic not near genes chr3L 6369130 intergenic not near genes chr3L 6369291 intergenic not near genes chr3L_10_6365001 chr3L_6365001 RAL-309 552 chr3L 6575551 6575571 chr3L 6575710 6575730 5 159 0.0 1.0 0.5 3.3 179 chr3L 6575551 intron,intron CG18769 +,jv - chr3L 6575640 intron,intron CG18769 +,jv - chr3L 6575730 intron,intron CG18769 +,jv - chr3L_5_6575001 chr3L_6575001 RAL-309 553 chr3L 6652080 6652106 chr3L 6652158 6652169 8 74 4.0 2.5 3.2 1.9 89 chr3L 6652080 intergenic not near genes chr3L 6652124 intergenic not near genes chr3L 6652169 intergenic not near genes chr3L_8_6650001 chr3L_6650001 RAL-309 554 chr3L 6657451 6657475 chr3L 6657603 6657614 5 149 1.5 5.5 3.5 1.1 163 chr3L 6657451 intergenic not near genes chr3L 6657532 intergenic not near genes chr3L 6657614 intergenic not near genes chr3L_5_6655001 chr3L_6655001 RAL-309 555 chr3L 6727282 6727299 chr3L 6727364 6727376 6 80 5.0 1.5 3.2 1.4 94 chr3L 6727282 intergenic not near genes chr3L 6727329 intergenic not near genes chr3L 6727376 intergenic not near genes chr3L_6_6725001 chr3L_6725001 RAL-309 556 chr3L 6816371 6816400 chr3L 6816535 6816548 7 160 1.5 3.5 2.5 2.0 177 chr3L 6816371 intergenic not near genes chr3L 6816460 intergenic not near genes chr3L 6816548 intergenic not near genes chr3L_7_6815001 chr3L_6815001 RAL-309 557 chr3L 6887519 6887538 chr3L 6895011 6895030 roo 6 7492 4.5 0.5 2.5 1.7 7511 chr3L 6887519 intergenic not near genes chr3L 6891274 intergenic not near genes chr3L 6895030 intergenic not near genes chr3L_6_6890001 chr3L_6890001 RAL-309 558 chr3L 6974508 6974511 chr3L 6974609 6974612 6 101 0.0 7.5 3.8 1.2 104 chr3L 6974508 intron Galphai - chr3L 6974560 intron Galphai - chr3L 6974612 intron Galphai - chr3L_6_6970001 chr3L_6970001 RAL-309 559 chr3L 6974512 6974521 chr3L 6974598 6974622 5 97 0.0 6.0 3.0 1.2 110 chr3L 6974512 intron Galphai - chr3L 6974567 intron Galphai - chr3L 6974622 intron Galphai - chr3L_5_6970001 chr3L_6970001 RAL-309 560 chr3L 7033058 7033087 chr3L 7033156 7033185 4 91 3.5 2.5 3.0 1.0 127 chr3L 7033058 intron Mp + chr3L 7033122 intron Mp + chr3L 7033185 intron Mp + chr3L_4_7030001 chr3L_7030001 RAL-309 561 chr3L 7125513 7125546 chr3L 7125609 7125641 9 92 3.0 1.0 2.0 3.0 128 chr3L 7125513 5` UTR msl-3 - chr3L 7125577 intergenic msl-3 -,BBS1 + chr3L 7125641 intergenic msl-3 -,BBS1 + chr3L_9_7125001 chr3L_7125001 RAL-309 562 chr3L 7276166 7276184 chr3L 7276228 7276266 5 71 1.5 1.0 1.2 2.3 100 chr3L 7276166 intron unc-13-4A - chr3L 7276216 intron unc-13-4A - chr3L 7276266 intron unc-13-4A - chr3L_5_7275001 chr3L_7275001 RAL-309 563 chr3L 7355716 7355751 chr3L 7363637 7363658 5 7912 32.5 24.0 28.2 0.2 7942 chr3L 7355716 exon CTCF - chr3L 7359687 exon pst - chr3L 7363658 exon Sec63 + chr3L_5_7355001 chr3L_7355001 RAL-309 564 chr3L 7480052 7480063 chr3L 7480141 7480152 5 89 2.0 0.5 1.2 2.3 100 chr3L 7480052 intergenic not near genes chr3L 7480102 intergenic not near genes chr3L 7480152 intergenic not near genes chr3L_5_7480001 chr3L_7480001 RAL-309 565 chr3L 7498762 7498779 chr3L 7503539 7503556 F-element 4 4775 1.0 1.0 1.0 2.0 4794 chr3L 7498762 5` UTR CG8539 - chr3L 7501159 intergenic not near genes chr3L 7503556 intergenic not near genes chr3L_4_7500001 chr3L_7500001 RAL-309 566 chr3L 7508680 7508703 chr3L 7508763 7508781 5 82 0.0 3.5 1.8 1.8 101 chr3L 7508680 intergenic not near genes chr3L 7508730 intergenic not near genes chr3L 7508781 intergenic not near genes chr3L_5_7505001 chr3L_7505001 RAL-309 567 chr3L 7572279 7572309 chr3L 7572366 7572396 9 83 2.5 3.5 3.0 2.2 117 chr3L 7572279 intergenic not near genes chr3L 7572338 intergenic not near genes chr3L 7572396 intergenic not near genes chr3L_9_7570001 chr3L_7570001 RAL-309 568 chr3L 7691839 7691854 chr3L 7691930 7691946 4 90 2.5 2.5 2.5 1.1 107 chr3L 7691839 intron,intron,intron CG32373 +,Ank2 -,CG44195 - chr3L 7691892 intron,intron,intron CG32373 +,Ank2 -,CG44195 - chr3L 7691946 intron,intron,intron CG32373 +,Ank2 -,CG44195 - chr3L_4_7690001 chr3L_7690001 RAL-309 569 chr3L 7801743 7801767 chr3L 7801982 7802006 7 238 3.5 3.0 3.2 1.7 263 chr3L 7801743 intron CG32369 - chr3L 7801874 intron CG32369 - chr3L 7802006 intron CG32369 - chr3L_7_7800001 chr3L_7800001 RAL-309 570 chr3L 7817060 7817085 chr3L 7817193 7817218 4 133 1.0 1.5 1.2 1.8 158 chr3L 7817060 intron Pdp1 - chr3L 7817139 intron Pdp1 - chr3L 7817218 intron Pdp1 - chr3L_4_7815001 chr3L_7815001 RAL-309 571 chr3L 7845387 7845404 chr3L 7845469 7845487 4 83 1.0 0.0 0.5 2.7 100 chr3L 7845387 intron Pdp1 - chr3L 7845437 intron Pdp1 - chr3L 7845487 intron Pdp1 - chr3L_4_7845001 chr3L_7845001 RAL-309 572 chr3L 7886520 7886543 chr3L 7889038 7889061 Stalker4 7 2514 3.5 1.5 2.5 2.0 2541 chr3L 7886520 intron CG32365 + chr3L 7887790 intron CG32365 + chr3L 7889061 intron CG32365 + chr3L_7_7885001 chr3L_7885001 RAL-309 573 chr3L 7985364 7985397 chr3L 7987691 7987724 NOF 7 2327 2.0 2.5 2.2 2.2 2360 chr3L 7985364 intron nmo + chr3L 7986544 intron nmo + chr3L 7987724 intron nmo + chr3L_7_7985001 chr3L_7985001 RAL-309 574 chr3L 8331714 8331745 chr3L 8331805 8331836 4 83 3.0 5.0 4.0 0.8 122 chr3L 8331714 intergenic not near genes chr3L 8331775 intergenic not near genes chr3L 8331836 intergenic not near genes chr3L_4_8330001 chr3L_8330001 RAL-309 575 chr3L 8579851 8579876 chr3L 8579930 8579943 5 73 3.5 1.5 2.5 1.4 92 chr3L 8579851 intron CG43078 + chr3L 8579897 intron CG43078 + chr3L 8579943 intron CG43078 + chr3L_5_8575001 chr3L_8575001 RAL-309 576 chr3L 8791272 8791293 chr3L 8796691 8796697 I-element 4 5416 6.5 0.5 3.5 0.9 5425 chr3L 8791272 exon Fhos + chr3L 8793984 intron Fhos + chr3L 8796697 intron Fhos + chr3L_4_8790001 chr3L_8790001 RAL-309 577 chr3L 8821243 8821259 chr3L 8821355 8821358 4 107 2.0 2.5 2.2 1.2 115 chr3L 8821243 intergenic not near genes chr3L 8821300 intergenic not near genes chr3L 8821358 intergenic not near genes chr3L_4_8820001 chr3L_8820001 RAL-309 578 chr3L 8827542 8827571 chr3L 8827616 8827646 6 70 2.0 1.0 1.5 2.4 104 chr3L 8827542 5` UTR dally + chr3L 8827594 5` UTR dally + chr3L 8827646 5` UTR dally + chr3L_6_8825001 chr3L_8825001 RAL-309 579 chr3L 8884403 8884413 chr3L 8884602 8884604 4 197 2.0 1.5 1.8 1.4 201 chr3L 8884403 intron dally + chr3L 8884504 intron dally + chr3L 8884604 intron dally + chr3L_4_8880001 chr3L_8880001 RAL-309 580 chr3L 9011133 9011156 chr3L 9011220 9011226 7 85 2.0 2.0 2.0 2.3 93 chr3L 9011133 intergenic not near genes chr3L 9011180 intergenic not near genes chr3L 9011226 intergenic not near genes chr3L_7_9010001 chr3L_9010001 RAL-309 581 chr3L 9076929 9076951 chr3L 9084486 9084511 412 6 7554 4.5 6.0 5.2 1.0 7582 chr3L 9076929 exon Tequila + chr3L 9080720 intron Tequila + chr3L 9084511 exon Tequila + chr3L_6_9080001 chr3L_9080001 RAL-309 582 chr3L 9209794 9209811 chr3L 9209894 9209910 4 100 2.5 1.0 1.8 1.4 116 chr3L 9209794 intergenic not near genes chr3L 9209852 intergenic not near genes chr3L 9209910 intergenic not near genes chr3L_4_9205001 chr3L_9205001 RAL-309 583 chr3L 9219257 9219276 chr3L 9219913 9219919 jockey 6 659 3.0 6.5 4.8 1.0 662 chr3L 9219257 intergenic not near genes chr3L 9219588 intergenic not near genes chr3L 9219919 intergenic not near genes chr3L_6_9215001 chr3L_9215001 RAL-309 584 chr3L 9359589 9359623 chr3L 9359680 9359685 6 86 1.0 1.0 1.0 3.0 96 chr3L 9359589 3` UTR CG32039 + chr3L 9359637 3` UTR CG32039 + chr3L 9359685 3` UTR CG32039 + chr3L_6_9355001 chr3L_9355001 RAL-309 585 chr3L 9510943 9510954 chr3L 9511022 9511026 5 76 0.0 5.5 2.8 1.3 83 chr3L 9510943 intron RpS9 - chr3L 9510984 intron RpS9 - chr3L 9511026 intron RpS9 - chr3L_5_9510001 chr3L_9510001 RAL-309 586 chr3L 9575918 9575940 chr3L 9580987 9581018 jockey 6 5078 3.5 3.5 3.5 1.3 5100 chr3L 9575918 intron CG42673 + chr3L 9578468 intron CG42673 + chr3L 9581018 intron CG42673 + chr3L_6_9575001 chr3L_9575001 RAL-309 587 chr3L 9661528 9661535 chr3L 9661611 9661618 4 82 3.0 3.5 3.2 1.0 90 chr3L 9661528 intron fry - chr3L 9661573 intron fry - chr3L 9661618 intron fry - chr3L_4_9660001 chr3L_9660001 RAL-309 588 chr3L 9684200 9684219 chr3L 9684299 9684318 7 97 1.0 0.5 0.8 3.9 118 chr3L 9684200 3` UTR CG6767 - chr3L 9684259 3` UTR CG6767 - chr3L 9684318 3` UTR CG6767 - chr3L_7_9680001 chr3L_9680001 RAL-309 589 chr3L 9745486 9745516 chr3L 9745570 9745600 9 83 3.0 0.0 1.5 3.6 114 chr3L 9745486 intron CG42268 - chr3L 9745543 intron CG42268 - chr3L 9745600 intron CG42268 - chr3L_9_9745001 chr3L_9745001 RAL-309 590 chr3L 9848515 9848546 chr3L 9848591 9848593 9 65 2.5 1.0 1.8 3.2 78 chr3L 9848515 intron RasGAP1 - chr3L 9848554 intron RasGAP1 - chr3L 9848593 intron RasGAP1 - chr3L_9_9845001 chr3L_9845001 RAL-309 591 chr3L 9858053 9858075 chr3L 9858126 9858152 7 74 3.5 2.0 2.8 1.8 99 chr3L 9858053 3` UTR CG10809 - chr3L 9858102 intron CG10809 - chr3L 9858152 intron CG10809 - chr3L_7_9855001 chr3L_9855001 RAL-309 592 chr3L 9987111 9987129 chr3L 9987188 9987207 4 78 3.5 2.0 2.8 1.1 96 chr3L 9987111 intron dpr6 + chr3L 9987159 intron dpr6 + chr3L 9987207 intron dpr6 + chr3L_4_9985001 chr3L_9985001 RAL-309 593 chr3L 10003162 10003181 chr3L 10003258 10003265 6 95 2.0 2.0 2.0 2.0 103 chr3L 10003162 intron dpr6 + chr3L 10003214 intron dpr6 + chr3L 10003265 intron dpr6 + chr3L_6_10000001 chr3L_10000001 RAL-309 594 chr3L 10161431 10161459 chr3L 10161510 10161525 9 76 1.0 1.0 1.0 4.5 94 chr3L 10161431 intron dpr10 - chr3L 10161478 intron dpr10 - chr3L 10161525 intron dpr10 - chr3L_9_10160001 chr3L_10160001 RAL-309 595 chr3L 10308756 10308776 chr3L 10308833 10308853 10 75 0.5 3.5 2.0 3.3 97 chr3L 10308756 intergenic not near genes chr3L 10308804 intergenic not near genes chr3L 10308853 intergenic not near genes chr3L_10_10305001 chr3L_10305001 RAL-309 596 chr3L 10386390 10386415 chr3L 10386467 10386492 8 76 2.0 2.0 2.0 2.7 102 chr3L 10386390 intergenic CR45245 + chr3L 10386441 intergenic CR45245 + chr3L 10386492 5` UTR CR45245 + chr3L_8_10385001 chr3L_10385001 RAL-309 597 chr3L 10414947 10414974 chr3L 10417318 10417326 Doc 5 2368 1.0 1.0 1.0 2.5 2379 chr3L 10414947 intergenic CG12362 + chr3L 10416136 intergenic not near genes chr3L 10417326 intergenic not near genes chr3L_5_10415001 chr3L_10415001 RAL-309 598 chr3L 10469930 10469964 chr3L 10470005 10470038 6 70 2.0 1.0 1.5 2.4 108 chr3L 10469930 intergenic not near genes chr3L 10469984 intergenic not near genes chr3L 10470038 intergenic not near genes chr3L_6_10465001 chr3L_10465001 RAL-309 599 chr3L 10476598 10476607 chr3L 10476672 10476694 4 81 2.5 3.5 3.0 1.0 96 chr3L 10476598 intergenic not near genes chr3L 10476646 intergenic not near genes chr3L 10476694 intergenic not near genes chr3L_4_10475001 chr3L_10475001 RAL-309 600 chr3L 10509487 10509505 chr3L 10509613 10509634 5 125 3.5 0.0 1.8 1.8 147 chr3L 10509487 intron A2bp1 + chr3L 10509560 intron A2bp1 + chr3L 10509634 intron A2bp1 + chr3L_5_10505001 chr3L_10505001 RAL-309 601 chr3L 10658192 10658212 chr3L 10658319 10658339 4 127 0.0 2.0 1.0 2.0 147 chr3L 10658192 intron CG32066 - chr3L 10658266 intron CG32066 - chr3L 10658339 intron CG32066 - chr3L_4_10655001 chr3L_10655001 RAL-309 602 chr3L 11022971 11022978 chr3L 11023053 11023060 4 82 3.0 1.5 2.2 1.2 89 chr3L 11022971 intergenic not near genes chr3L 11023016 intergenic not near genes chr3L 11023060 intergenic Fad2 + chr3L_4_11020001 chr3L_11020001 RAL-309 603 chr3L 11131810 11131820 chr3L 11132074 11132084 5 264 1.0 4.0 2.5 1.4 274 chr3L 11131810 intron CG42575 + chr3L 11131947 intron,3` UTR CG42575 +,CG32074 - chr3L 11132084 intron,exon CG42575 +,CG32074 - chr3L_5_11130001 chr3L_11130001 RAL-309 604 chr3L 11135531 11135801 chr3L 11135761 11135886 7 126 1.0 1.0 1.0 3.5 355 chr3L 11135531 intergenic CG14143 + chr3L 11135708 intergenic CG14143 +,CG32082 + chr3L 11135886 intergenic CG32082 +,CG14143 + chr3L_7_11135001 chr3L_11135001 RAL-309 605 chr3L 11329696 11329728 chr3L 11332896 11332915 jockey 6 3198 6.5 2.0 4.2 1.2 3219 chr3L 11329696 intergenic not near genes chr3L 11331306 intergenic not near genes chr3L 11332915 intergenic not near genes chr3L_6_11330001 chr3L_11330001 RAL-309 606 chr3L 11579721 11579741 chr3L 11580865 11580885 4 1145 1.5 5.5 3.5 0.9 1164 chr3L 11579721 intergenic CG43390 - chr3L 11580303 intergenic CG43390 - chr3L 11580885 exon CG43391 - chr3L_4_11580001 chr3L_11580001 RAL-309 607 chr3L 11670940 11670955 chr3L 11671034 11671042 4 92 7.5 1.0 4.2 0.8 102 chr3L 11670940 intron CG32085 - chr3L 11670991 intron CG32085 - chr3L 11671042 intron CG32085 - chr3L_4_11670001 chr3L_11670001 RAL-309 608 chr3L 11723081 11723112 chr3L 11727876 11727907 Doc 9 4794 2.0 1.5 1.8 3.2 4826 chr3L 11723081 3` UTR Bmcp + chr3L 11725494 intron Bmcp + chr3L 11727907 3` UTR Bmcp + chr3L_9_11725001 chr3L_11725001 RAL-309 609 chr3L 11729682 11729704 chr3L 11729758 11729765 8 74 4.5 0.5 2.5 2.3 83 chr3L 11729682 exon CG32088 + chr3L 11729724 intron CG32088 + chr3L 11729765 intron CG32088 + chr3L_8_11725001 chr3L_11725001 RAL-309 610 chr3L 11744023 11744036 chr3L 11744131 11744135 6 105 3.5 0.0 1.8 2.1 112 chr3L 11744023 exon CG6024 - chr3L 11744079 intron CG6024 - chr3L 11744135 intron CG6024 - chr3L_6_11740001 chr3L_11740001 RAL-309 611 chr3L 7749470 7749471 chr3L 11777678 11777678 4 4028208 4.0 13.5 8.8 0.4 4028208 chr3L 7749470 intron,3` UTR CG32373 +,CG13685 + chr3L 9763574 5` UTR CG8177 + chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_4_9760001 chr3L_9760001 RAL-309 612 chr3L 11849336 11849356 chr3L 11849436 11849456 9 98 1.0 3.5 2.2 2.8 120 chr3L 11849336 intergenic not near genes chr3L 11849396 intergenic not near genes chr3L 11849456 intergenic not near genes chr3L_9_11845001 chr3L_11845001 RAL-309 613 chr3L 11961208 11961228 chr3L 11961292 11961300 6 84 2.5 3.0 2.8 1.6 92 chr3L 11961208 exon prc - chr3L 11961254 exon prc - chr3L 11961300 exon prc - chr3L_6_11960001 chr3L_11960001 RAL-309 614 chr3L 12089083 12089111 chr3L 12089161 12089188 10 78 1.0 2.0 1.5 4.0 105 chr3L 12089083 3` UTR CG17154 + chr3L 12089136 3` UTR CG17154 + chr3L 12089188 3` UTR CG17154 + chr3L_10_12085001 chr3L_12085001 RAL-309 615 chr3L 12302068 12302085 chr3L 12302155 12302168 5 86 0.0 1.0 0.5 3.3 100 chr3L 12302068 intergenic CR44551 -,CR44550 + chr3L 12302118 intergenic CR44551 -,CR44550 + chr3L 12302168 3` UTR CR44551 - chr3L_5_12300001 chr3L_12300001 RAL-309 616 chr3L 12353921 12353948 chr3L 12354009 12354029 5 86 1.0 1.5 1.2 2.3 108 chr3L 12353921 intergenic not near genes chr3L 12353975 intergenic not near genes chr3L 12354029 intergenic not near genes chr3L_5_12350001 chr3L_12350001 RAL-309 617 chr3L 12378585 12378604 chr3L 12378741 12378770 6 164 2.5 3.0 2.8 1.6 185 chr3L 12378585 intron Ncc69 - chr3L 12378678 intron Ncc69 - chr3L 12378770 intron Ncc69 - chr3L_6_12375001 chr3L_12375001 RAL-309 618 chr3L 12867548 12867579 chr3L 12867640 12867670 4 87 0.0 0.0 0.0 4.0 122 chr3L 12867548 intergenic not near genes chr3L 12867609 intergenic not near genes chr3L 12867670 intergenic not near genes chr3L_4_12865001 chr3L_12865001 RAL-309 619 chr3L 12874933 12874963 chr3L 12877225 12877255 jockey 8 2291 1.0 1.0 1.0 4.0 2322 chr3L 12874933 intergenic not near genes chr3L 12876094 intergenic not near genes chr3L 12877255 intergenic not near genes chr3L_8_12875001 chr3L_12875001 RAL-309 620 chr3L 12919280 12919288 chr3L 12924763 12924772 Rt1c 4 5484 7.5 1.0 4.2 0.8 5492 chr3L 12919280 intergenic not near genes chr3L 12922026 intergenic not near genes chr3L 12924772 intergenic not near genes chr3L_4_12920001 chr3L_12920001 RAL-309 621 chr3L 12957797 12957812 chr3L 12962278 12962293 copia 5 4482 2.5 3.5 3.0 1.2 4496 chr3L 12957797 intergenic not near genes chr3L 12960045 intergenic not near genes chr3L 12962293 intergenic not near genes chr3L_5_12960001 chr3L_12960001 RAL-309 622 chr3L 12978534 12978782 chr3L 12978618 12978861 9 80 4.0 3.5 3.8 1.9 327 chr3L 12978534 intergenic not near genes chr3L 12978698 intergenic not near genes chr3L 12978861 intergenic not near genes chr3L_9_12975001 chr3L_12975001 RAL-309 623 chr3L 13267287 13267307 chr3L 13267398 13267416 5 111 2.5 0.5 1.5 2.0 129 chr3L 13267287 intron caps + chr3L 13267352 intron caps + chr3L 13267416 intron caps + chr3L_5_13265001 chr3L_13265001 RAL-309 624 chr3L 13287743 13287775 chr3L 13287829 13287860 13 84 3.0 2.5 2.8 3.4 117 chr3L 13287743 intergenic not near genes chr3L 13287802 intergenic not near genes chr3L 13287860 intergenic not near genes chr3L_13_13285001 chr3L_13285001 RAL-309 625 chr3L 13525155 13525184 chr3L 13532951 13532980 roo 5 7794 3.5 2.0 2.8 1.3 7825 chr3L 13525155 intergenic not near genes chr3L 13529068 intergenic not near genes chr3L 13532980 intergenic not near genes chr3L_5_13525001 chr3L_13525001 RAL-309 626 chr3L 13646653 13646681 chr3L 13646740 13646751 6 83 4.0 2.5 3.2 1.4 98 chr3L 13646653 intron bru-3 - chr3L 13646702 intron bru-3 - chr3L 13646751 intron bru-3 - chr3L_6_13645001 chr3L_13645001 RAL-309 627 chr3L 13670647 13670678 chr3L 13670728 13670759 10 79 1.0 3.5 2.2 3.1 112 chr3L 13670647 intron bru-3 - chr3L 13670703 intron bru-3 - chr3L 13670759 intron bru-3 - chr3L_10_13670001 chr3L_13670001 RAL-309 628 chr3L 13729457 13729478 chr3L 13734369 13734390 9 4913 16.0 23.0 19.5 0.4 4933 chr3L 13729457 intron bru-3 - chr3L 13731924 intron bru-3 - chr3L 13734390 intron bru-3 - chr3L_9_13730001 chr3L_13730001 RAL-309 629 chr3L 13746035 13746064 chr3L 13746118 13746146 4 83 1.5 1.5 1.5 1.6 111 chr3L 13746035 intron bru-3 - chr3L 13746090 intron bru-3 - chr3L 13746146 intron bru-3 - chr3L_4_13745001 chr3L_13745001 RAL-309 630 chr3L 14099441 14099451 chr3L 14099517 14099540 4 86 1.5 6.5 4.0 0.8 99 chr3L 14099441 intergenic not near genes chr3L 14099490 intergenic not near genes chr3L 14099540 intergenic not near genes chr3L_4_14095001 chr3L_14095001 RAL-309 631 chr3L 14185158 14185188 chr3L 14185234 14185264 7 74 1.5 1.0 1.2 3.2 106 chr3L 14185158 intergenic not near genes chr3L 14185211 intergenic not near genes chr3L 14185264 intergenic not near genes chr3L_7_14185001 chr3L_14185001 RAL-309 632 chr3L 14282590 14282602 chr3L 14282670 14282681 5 80 5.0 3.5 4.2 1.0 91 chr3L 14282590 intron fz + chr3L 14282636 intron fz + chr3L 14282681 intron fz + chr3L_5_14280001 chr3L_14280001 RAL-309 633 chr3L 14312032 14312059 chr3L 14316843 14316864 X-element 6 4806 0.5 1.5 1.0 3.0 4832 chr3L 14312032 exon fz + chr3L 14314448 intron fz + chr3L 14316864 intron fz + chr3L_6_14310001 chr3L_14310001 RAL-309 634 chr3L 14356518 14356547 chr3L 14356598 14356626 10 77 2.0 2.0 2.0 3.3 108 chr3L 14356518 intron fz + chr3L 14356572 intron fz + chr3L 14356626 intron fz + chr3L_10_14355001 chr3L_14355001 RAL-309 635 chr3L 14411874 14411894 chr3L 14411953 14411957 9 77 2.0 4.0 3.0 2.2 83 chr3L 14411874 intron CG3919 + chr3L 14411916 intron CG3919 + chr3L 14411957 intron CG3919 + chr3L_9_14410001 chr3L_14410001 RAL-309 636 chr3L 14444729 14444747 chr3L 14444904 14444922 7 175 1.0 3.5 2.2 2.2 193 chr3L 14444729 intron bbg - chr3L 14444826 intron bbg - chr3L 14444922 intron bbg - chr3L_7_14440001 chr3L_14440001 RAL-309 637 chr3L 14468451 14468478 chr3L 14473657 14473684 copia 4 5206 3.0 5.5 4.2 0.8 5233 chr3L 14468451 intron bbg - chr3L 14471068 intron bbg - chr3L 14473684 intron bbg - chr3L_4_14470001 chr3L_14470001 RAL-309 638 chr3L 14486020 14486050 chr3L 14486101 14486131 6 80 2.0 0.5 1.2 2.7 111 chr3L 14486020 intron bbg - chr3L 14486076 intron bbg - chr3L 14486131 intron bbg - chr3L_6_14485001 chr3L_14485001 RAL-309 639 chr3L 14596537 14596550 chr3L 14596614 14596627 4 77 3.5 2.0 2.8 1.1 90 chr3L 14596537 intron HGTX - chr3L 14596582 intron HGTX - chr3L 14596627 intron HGTX - chr3L_4_14595001 chr3L_14595001 RAL-309 640 chr3L 14893618 14893643 chr3L 14893696 14893730 8 84 1.5 1.0 1.2 3.6 112 chr3L 14893618 intergenic CG34245 - chr3L 14893674 intergenic CG34245 - chr3L 14893730 intergenic CG34245 - chr3L_8_14890001 chr3L_14890001 RAL-309 641 chr3L 15085047 15085083 chr3L 15086213 15086249 1360 7 1158 2.0 1.5 1.8 2.5 1202 chr3L 15085047 intron cp309 - chr3L 15085648 intron cp309 - chr3L 15086249 intron cp309 - chr3L_7_15085001 chr3L_15085001 RAL-309 642 chr3L 15101768 15101803 chr3L 15103448 15103481 4 1683 17.0 14.5 15.8 0.2 1713 chr3L 15101768 intron,3` UTR CTPsyn +,CR43972 - chr3L 15102624 intron CTPsyn + chr3L 15103481 intron CTPsyn + chr3L_4_15100001 chr3L_15100001 RAL-309 643 chr3L 15209065 15209080 chr3L 15209150 15209165 5 84 5.0 0.0 2.5 1.4 100 chr3L 15209065 intergenic CG6888 + chr3L 15209115 intergenic not near genes chr3L 15209165 intergenic not near genes chr3L_5_15205001 chr3L_15205001 RAL-309 644 chr3L 15231393 15231423 chr3L 15231485 15231515 7 91 2.5 3.5 3.0 1.8 122 chr3L 15231393 intergenic not near genes chr3L 15231454 intergenic not near genes chr3L 15231515 intergenic not near genes chr3L_7_15230001 chr3L_15230001 RAL-309 645 chr3L 15384963 15384985 chr3L 15385085 15385098 6 124 5.5 1.0 3.2 1.4 135 chr3L 15384963 intergenic not near genes chr3L 15385030 intergenic not near genes chr3L 15385098 intergenic not near genes chr3L_6_15385001 chr3L_15385001 RAL-309 646 chr3L 15406020 15406054 chr3L 15406102 15406137 4 79 0.5 2.5 1.5 1.6 117 chr3L 15406020 intergenic not near genes chr3L 15406078 intergenic not near genes chr3L 15406137 intergenic not near genes chr3L_4_15405001 chr3L_15405001 RAL-309 647 chr3L 15466044 15466138 chr3L 15466126 15466234 6 94 0.0 0.0 0.0 6.0 190 chr3L 15466044 intergenic not near genes chr3L 15466139 intergenic not near genes chr3L 15466234 intergenic not near genes chr3L_6_15465001 chr3L_15465001 RAL-309 648 chr3L 15472652 15472662 chr3L 15472729 15472739 6 76 7.0 6.5 6.8 0.8 87 chr3L 15472652 exon CG7804 - chr3L 15472696 exon CG7804 - chr3L 15472739 exon CG7804 - chr3L_6_15470001 chr3L_15470001 RAL-309 649 chr3L 15591632 15591648 chr3L 15591787 15591801 7 153 1.0 4.0 2.5 2.0 169 chr3L 15591632 intron RhoGAP71E + chr3L 15591716 intron RhoGAP71E + chr3L 15591801 intron RhoGAP71E + chr3L_7_15590001 chr3L_15590001 RAL-309 650 chr3L 15883192 15883218 chr3L 15883483 15883493 8 290 1.5 2.0 1.8 2.9 301 chr3L 15883192 intron pHCl - chr3L 15883342 intron pHCl - chr3L 15883493 intron pHCl - chr3L_8_15880001 chr3L_15880001 RAL-309 651 chr3L 16162600 16162623 chr3L 16162684 16162700 4 82 2.5 2.5 2.5 1.1 100 chr3L 16162600 intron CG5151 - chr3L 16162650 intron CG5151 - chr3L 16162700 intron CG5151 - chr3L_4_16160001 chr3L_16160001 RAL-309 652 chr3L 16184117 16184132 chr3L 16188935 16188948 X-element 7 4817 1.0 3.0 2.0 2.3 4831 chr3L 16184117 intergenic not near genes chr3L 16186532 intergenic not near genes chr3L 16188948 intergenic not near genes chr3L_7_16185001 chr3L_16185001 RAL-309 653 chr3L 16246563 16246578 chr3L 16250237 16250253 6 3676 15.0 5.0 10.0 0.5 3690 chr3L 16246563 intergenic not near genes chr3L 16248408 intergenic not near genes chr3L 16250253 3` UTR CG13055 - chr3L_6_16245001 chr3L_16245001 RAL-309 654 chr3L 16340263 16340290 chr3L 16340387 16340388 8 120 1.0 2.0 1.5 3.2 125 chr3L 16340263 intron CG4998 + chr3L 16340326 intron CG4998 + chr3L 16340388 intron CG4998 + chr3L_8_16340001 chr3L_16340001 RAL-309 655 chr3L 16443856 16443877 chr3L 16446196 16446217 Doc 5 2340 0.0 4.5 2.2 1.6 2361 chr3L 16443856 intron,intron CG33158 +,dsx-c73A - chr3L 16445036 intron,intron CG33158 +,dsx-c73A - chr3L 16446217 intron,intron CG33158 +,dsx-c73A - chr3L_5_16445001 chr3L_16445001 RAL-309 656 chr3L 16457912 16457929 chr3L 16457983 16458005 7 74 3.0 3.5 3.2 1.7 93 chr3L 16457912 intron CG33158 + chr3L 16457958 intron CG33158 + chr3L 16458005 intron CG33158 + chr3L_7_16455001 chr3L_16455001 RAL-309 657 chr3L 16528897 16528925 chr3L 16529365 16529393 6 464 4.0 3.0 3.5 1.3 496 chr3L 16528897 intron CG43373 - chr3L 16529145 intron CG43373 - chr3L 16529393 intron CG43373 - chr3L_6_16525001 chr3L_16525001 RAL-309 658 chr3L 16867549 16867569 chr3L 16867627 16867646 4 78 1.0 0.5 0.8 2.2 97 chr3L 16867549 intron Lmpt + chr3L 16867598 intron Lmpt + chr3L 16867646 intron Lmpt + chr3L_4_16865001 chr3L_16865001 RAL-309 659 chr3L 16945755 16945761 chr3L 16954883 16954888 roo 4 9131 3.5 2.0 2.8 1.1 9133 chr3L 16945755 exon Obp73a + chr3L 16950322 intergenic not near genes chr3L 16954888 5` UTR Nc73EF + chr3L_4_16950001 chr3L_16950001 RAL-309 660 chr3L 17085012 17085036 chr3L 17094153 17094162 roo 7 9142 2.0 4.0 3.0 1.8 9150 chr3L 17085012 intron Rbp6 - chr3L 17089587 intron Rbp6 - chr3L 17094162 intron Rbp6 - chr3L_7_17085001 chr3L_17085001 RAL-309 661 chr3L 17120658 17120684 chr3L 17120731 17120734 9 72 2.0 1.5 1.8 3.2 76 chr3L 17120658 intron Rbp6 - chr3L 17120696 intron Rbp6 - chr3L 17120734 intron Rbp6 - chr3L_9_17120001 chr3L_17120001 RAL-309 662 chr3L 17146963 17146988 chr3L 17147039 17147070 11 80 1.5 2.0 1.8 3.9 107 chr3L 17146963 intron Rbp6 - chr3L 17147016 intron Rbp6 - chr3L 17147070 intron Rbp6 - chr3L_11_17145001 chr3L_17145001 RAL-309 663 chr3L 17149165 17149181 chr3L 17149245 17149262 5 81 3.5 0.0 1.8 1.8 97 chr3L 17149165 intron Rbp6 - chr3L 17149214 intron Rbp6 - chr3L 17149262 intron Rbp6 - chr3L_5_17145001 chr3L_17145001 RAL-309 664 chr3L 17510748 17510754 chr3L 17510832 17510838 4 84 2.0 3.0 2.5 1.1 90 chr3L 17510748 exon Oatp74D + chr3L 17510793 intron Oatp74D + chr3L 17510838 intron Oatp74D + chr3L_4_17510001 chr3L_17510001 RAL-309 665 chr3L 17510757 17510765 chr3L 17510830 17510847 4 80 1.0 3.0 2.0 1.3 90 chr3L 17510757 exon Oatp74D + chr3L 17510802 intron Oatp74D + chr3L 17510847 intron Oatp74D + chr3L_4_17510001 chr3L_17510001 RAL-309 666 chr3L 17516981 17517005 chr3L 17524539 17524549 412 6 7553 3.5 5.0 4.2 1.2 7568 chr3L 17516981 intron CG7564 + chr3L 17520765 intron CG7564 + chr3L 17524549 3` UTR CG7564 + chr3L_6_17520001 chr3L_17520001 RAL-309 667 chr3L 17577113 17577136 chr3L 17577187 17577211 4 75 2.0 0.0 1.0 2.0 98 chr3L 17577113 intron Eip74EF - chr3L 17577162 intron Eip74EF - chr3L 17577211 intron Eip74EF - chr3L_4_17575001 chr3L_17575001 RAL-309 668 chr3L 17730858 17730863 chr3L 17738182 17738193 mdg1 4 7328 1.5 1.5 1.5 1.6 7335 chr3L 17730858 intron Ccn + chr3L 17734526 intron Ccn + chr3L 17738193 intron Ccn + chr3L_4_17730001 chr3L_17730001 RAL-309 669 chr3L 17789849 17789870 chr3L 17789925 17789946 4 76 1.5 1.5 1.5 1.6 97 chr3L 17789849 intergenic not near genes chr3L 17789898 intergenic not near genes chr3L 17789946 intergenic not near genes chr3L_4_17785001 chr3L_17785001 RAL-309 670 chr3L 17837623 17837654 chr3L 17837711 17837742 13 85 1.5 4.0 2.8 3.4 119 chr3L 17837623 exon Grd + chr3L 17837682 intron Grd + chr3L 17837742 exon Grd + chr3L_13_17835001 chr3L_17835001 RAL-309 671 chr3L 18000680 18000697 chr3L 18000757 18000774 4 77 2.0 1.5 1.8 1.4 94 chr3L 18000680 intron Eip75B - chr3L 18000727 intron Eip75B - chr3L 18000774 intron Eip75B - chr3L_4_18000001 chr3L_18000001 RAL-309 672 chr3L 18006222 18006238 chr3L 18006346 18006362 6 123 3.5 2.0 2.8 1.6 140 chr3L 18006222 intron Eip75B - chr3L 18006292 intron Eip75B - chr3L 18006362 intron Eip75B - chr3L_6_18005001 chr3L_18005001 RAL-309 673 chr3L 18008831 18008857 chr3L 18008935 18008960 9 100 2.5 2.0 2.2 2.8 129 chr3L 18008831 intron Eip75B - chr3L 18008896 intron Eip75B - chr3L 18008960 intron Eip75B - chr3L_9_18005001 chr3L_18005001 RAL-309 674 chr3L 18106257 18106285 chr3L 18106375 18106404 6 118 1.5 1.0 1.2 2.7 147 chr3L 18106257 intergenic CG13698 -,mRpS26 + chr3L 18106330 intergenic CG13698 -,mRpS26 + chr3L 18106404 intergenic mRpS26 +,CG13698 - chr3L_6_18105001 chr3L_18105001 RAL-309 675 chr3L 18301353 18301377 chr3L 18301442 18301464 4 88 0.0 1.5 0.8 2.2 111 chr3L 18301353 intergenic CG13700 - chr3L 18301408 intergenic CG13700 - chr3L 18301464 intergenic CG13700 - chr3L_4_18300001 chr3L_18300001 RAL-309 676 chr3L 9013689 9013695 chr3L 18417066 18417066 6 9403374 16.5 21.5 19.0 0.3 9403377 chr3L 9013689 intron Doc2 - chr3L 13715378 intron bru-3 - chr3L 18417066 intergenic not near genes chr3L_6_13715001 chr3L_13715001 RAL-309 677 chr3L 18456273 18456293 chr3L 18456361 18456378 4 87 1.5 4.0 2.8 1.1 105 chr3L 18456273 intergenic CR44670 - chr3L 18456326 intergenic CR44670 - chr3L 18456378 intergenic CR44670 - chr3L_4_18455001 chr3L_18455001 RAL-309 678 chr3L 18514900 18514935 chr3L 18520091 18520104 BS 4 5186 1.0 2.5 1.8 1.4 5204 chr3L 18514900 intergenic not near genes chr3L 18517502 intergenic not near genes chr3L 18520104 intergenic not near genes chr3L_4_18515001 chr3L_18515001 RAL-309 679 chr3L 18555841 18555865 chr3L 18555923 18555947 5 82 2.5 0.0 1.2 2.3 106 chr3L 18555841 intergenic not near genes chr3L 18555894 intergenic not near genes chr3L 18555947 intergenic not near genes chr3L_5_18555001 chr3L_18555001 RAL-309 680 chr3L 18581335 18581366 chr3L 18581411 18581437 5 75 1.0 1.5 1.2 2.3 102 chr3L 18581335 intergenic not near genes chr3L 18581386 intergenic not near genes chr3L 18581437 intergenic not near genes chr3L_5_18580001 chr3L_18580001 RAL-309 681 chr3L 18586572 18586593 chr3L 18586671 18586688 9 96 2.0 2.0 2.0 3.0 116 chr3L 18586572 intergenic not near genes chr3L 18586630 intergenic not near genes chr3L 18586688 intergenic not near genes chr3L_9_18585001 chr3L_18585001 RAL-309 682 chr3L 18721773 18721799 chr3L 18721864 18721889 10 90 1.0 2.5 1.8 3.6 116 chr3L 18721773 intergenic CG12477 - chr3L 18721831 intergenic CG12477 - chr3L 18721889 intergenic CG12477 - chr3L_10_18720001 chr3L_18720001 RAL-309 683 chr3L 18772411 18772442 chr3L 18781088 18781101 roo 6 8670 3.0 2.0 2.5 1.7 8690 chr3L 18772411 intron ftz-f1 - chr3L 18776756 intron ftz-f1 - chr3L 18781101 intron ftz-f1 - chr3L_6_18775001 chr3L_18775001 RAL-309 684 chr3L 18820883 18820903 chr3L 18821062 18821082 4 177 2.0 1.5 1.8 1.4 199 chr3L 18820883 intergenic CG14073 -,HipHop + chr3L 18820982 intergenic HipHop +,CG14073 - chr3L 18821082 intergenic HipHop +,CG14073 - chr3L_4_18820001 chr3L_18820001 RAL-309 685 chr3L 18962604 18962616 chr3L 18962683 18962693 5 79 4.5 2.5 3.5 1.1 89 chr3L 18962604 intergenic not near genes chr3L 18962648 intergenic not near genes chr3L 18962693 intergenic not near genes chr3L_5_18960001 chr3L_18960001 RAL-309 686 chr3L 19008836 19008871 chr3L 19009176 19009207 jockey 7 333 0.5 3.0 1.8 2.5 371 chr3L 19008836 intron nkd - chr3L 19009022 intron nkd - chr3L 19009207 intron nkd - chr3L_7_19005001 chr3L_19005001 RAL-309 687 chr3L 19025933 19025972 chr3L 19026017 19026042 9 78 2.5 0.5 1.5 3.6 109 chr3L 19025933 intron nkd - chr3L 19025988 intron nkd - chr3L 19026042 intron nkd - chr3L_9_19025001 chr3L_19025001 RAL-309 688 chr3L 19082040 19082072 chr3L 19082141 19082170 11 101 2.0 6.0 4.0 2.2 130 chr3L 19082040 intron Mkp3 - chr3L 19082105 intron Mkp3 - chr3L 19082170 intron Mkp3 - chr3L_11_19080001 chr3L_19080001 RAL-309 689 chr3L 19115637 19115669 chr3L 19115816 19115849 BS 6 179 5.0 1.5 3.2 1.4 212 chr3L 19115637 intron CG14082 - chr3L 19115743 intron CG14082 - chr3L 19115849 intron CG14082 - chr3L_6_19115001 chr3L_19115001 RAL-309 690 chr3L 19117041 19117070 chr3L 19124488 19124516 mdg1 6 7439 5.0 2.5 3.8 1.2 7475 chr3L 19117041 intron CG14082 - chr3L 19120778 intron CG14082 - chr3L 19124516 intron CG14082 - chr3L_6_19120001 chr3L_19120001 RAL-309 691 chr3L 19138565 19138587 chr3L 19138645 19138668 5 80 2.5 3.5 3.0 1.2 103 chr3L 19138565 intron CG14082 - chr3L 19138616 intron CG14082 - chr3L 19138668 intron CG14082 - chr3L_5_19135001 chr3L_19135001 RAL-309 692 chr3L 19173716 19173744 chr3L 19173867 19173880 8 145 3.5 4.0 3.8 1.7 164 chr3L 19173716 intron fz2 - chr3L 19173798 intron fz2 - chr3L 19173880 intron fz2 - chr3L_8_19170001 chr3L_19170001 RAL-309 693 chr3L 19182403 19182418 chr3L 19182470 19182498 5 77 0.5 3.5 2.0 1.7 95 chr3L 19182403 intron fz2 - chr3L 19182450 intron fz2 - chr3L 19182498 intron fz2 - chr3L_5_19180001 chr3L_19180001 RAL-309 694 chr3L 19208060 19208090 chr3L 19209432 19209464 Doc 8 1373 4.5 3.0 3.8 1.7 1404 chr3L 19208060 intron fz2 - chr3L 19208762 intron fz2 - chr3L 19209464 intron fz2 - chr3L_8_19205001 chr3L_19205001 RAL-309 695 chr3L 19232611 19232628 chr3L 19232692 19232709 6 80 2.5 2.5 2.5 1.7 98 chr3L 19232611 intron fz2 - chr3L 19232660 intron fz2 - chr3L 19232709 intron fz2 - chr3L_6_19230001 chr3L_19230001 RAL-309 696 chr3L 19292922 19292940 chr3L 19293014 19293026 5 91 0.0 0.0 0.0 5.0 104 chr3L 19292922 intergenic Gbs-76A - chr3L 19292974 intergenic Gbs-76A - chr3L 19293026 intergenic Gbs-76A - chr3L_5_19290001 chr3L_19290001 RAL-309 697 chr3L 19343592 19343617 chr3L 19343732 19343758 5 140 2.0 1.5 1.8 1.8 166 chr3L 19343592 exon CG32206 - chr3L 19343675 intron CG32206 - chr3L 19343758 intron CG32206 - chr3L_5_19340001 chr3L_19340001 RAL-309 698 chr3L 19426746 19426783 chr3L 19426824 19426829 8 72 3.0 3.5 3.2 1.9 83 chr3L 19426746 intergenic not near genes chr3L 19426788 intergenic not near genes chr3L 19426829 intergenic not near genes chr3L_8_19425001 chr3L_19425001 RAL-309 699 chr3L 19488480 19488497 chr3L 19488560 19488579 7 81 2.5 1.5 2.0 2.3 99 chr3L 19488480 intergenic pncr009:3L -,CG32212 + chr3L 19488530 intergenic pncr009:3L -,CG32212 + chr3L 19488579 intergenic pncr009:3L -,CG32212 + chr3L_7_19485001 chr3L_19485001 RAL-309 700 chr3L 19527922 19527960 chr3L 19528001 19528035 7 77 1.0 1.0 1.0 3.5 113 chr3L 19527922 intergenic not near genes chr3L 19527978 intergenic not near genes chr3L 19528035 intergenic not near genes chr3L_7_19525001 chr3L_19525001 RAL-309 701 chr3L 19861841 19861853 chr3L 19863611 19863640 S-element 5 1781 3.0 2.0 2.5 1.4 1799 chr3L 19861841 5` UTR CR45433 + chr3L 19862740 intergenic not near genes chr3L 19863640 intergenic not near genes chr3L_5_19860001 chr3L_19860001 RAL-309 702 chr3L 19947165 19947198 chr3L 19947252 19947286 4 88 6.0 5.0 5.5 0.6 121 chr3L 19947165 intron Ac76E + chr3L 19947226 intron Ac76E + chr3L 19947286 intron Ac76E + chr3L_4_19945001 chr3L_19945001 RAL-309 703 chr3L 20143083 20143111 chr3L 20143163 20143191 7 79 6.0 6.5 6.2 1.0 108 chr3L 20143083 intergenic not near genes chr3L 20143137 intergenic not near genes chr3L 20143191 intergenic not near genes chr3L_7_20140001 chr3L_20140001 RAL-309 704 chr3L 20257343 20257359 chr3L 20258454 20258478 pogo 5 1118 1.0 0.5 0.8 2.8 1135 chr3L 20257343 intron rdgC + chr3L 20257910 intron rdgC + chr3L 20258478 intron rdgC + chr3L_5_20255001 chr3L_20255001 RAL-309 705 chr3L 20345606 20345636 chr3L 20345687 20345717 4 81 6.5 4.0 5.2 0.6 111 chr3L 20345606 intergenic Rbbp5 - chr3L 20345662 intergenic Rbbp5 - chr3L 20345717 intergenic Rbbp5 - chr3L_4_20345001 chr3L_20345001 RAL-309 706 chr3L 20386960 20386969 chr3L 20387042 20387070 4 97 3.0 1.0 2.0 1.3 110 chr3L 20386960 intron fbl + chr3L 20387015 intron fbl + chr3L 20387070 intron fbl + chr3L_4_20385001 chr3L_20385001 RAL-309 707 chr3L 20570014 20570049 chr3L 20570130 20570148 6 112 8.0 4.5 6.2 0.8 134 chr3L 20570014 intergenic not near genes chr3L 20570081 intergenic not near genes chr3L 20570148 intergenic not near genes chr3L_6_20570001 chr3L_20570001 RAL-309 708 chr3L 20590071 20590095 chr3L 20590610 20590634 412 7 536 1.5 4.0 2.8 1.8 563 chr3L 20590071 intergenic not near genes chr3L 20590352 intergenic not near genes chr3L 20590634 intergenic not near genes chr3L_7_20590001 chr3L_20590001 RAL-309 709 chr3L 20913751 20913776 chr3L 20913833 20913858 6 82 2.0 3.0 2.5 1.7 107 chr3L 20913751 intergenic CR43930 - chr3L 20913804 intergenic CR43930 - chr3L 20913858 intergenic CR43930 - chr3L_6_20910001 chr3L_20910001 RAL-309 710 chr3L 21014928 21014948 chr3L 21023408 21023425 Tirant 4 8480 4.5 5.5 5.0 0.7 8497 chr3L 21014928 intron skd - chr3L 21019176 intron skd - chr3L 21023425 intron skd - chr3L_4_21015001 chr3L_21015001 RAL-309 711 chr3L 21067954 21067972 chr3L 21068034 21068050 4 79 10.0 7.5 8.8 0.4 96 chr3L 21067954 intron siz + chr3L 21068002 intron siz + chr3L 21068050 intron siz + chr3L_4_21065001 chr3L_21065001 RAL-309 712 chr3L 21151864 21151877 chr3L 21156947 21156961 flea 5 5083 3.5 1.5 2.5 1.4 5097 chr3L 21151864 intron Ac78C - chr3L 21154412 intron Ac78C - chr3L 21156961 intron Ac78C - chr3L_5_21150001 chr3L_21150001 RAL-309 713 chr3L 21158595 21158626 chr3L 21158671 21158684 6 67 3.5 6.5 5.0 1.0 89 chr3L 21158595 intron Ac78C - chr3L 21158640 intron Ac78C - chr3L 21158684 intron Ac78C - chr3L_6_21155001 chr3L_21155001 RAL-309 714 chr3L 21159376 21159400 chr3L 21159467 21159491 4 90 7.0 7.5 7.2 0.5 115 chr3L 21159376 intron Ac78C - chr3L 21159434 intron Ac78C - chr3L 21159491 intron Ac78C - chr3L_4_21155001 chr3L_21155001 RAL-309 715 chr3L 21415143 21415153 chr3L 21415226 21415235 4 83 9.5 9.0 9.2 0.4 92 chr3L 21415143 intron rgn + chr3L 21415189 intron rgn + chr3L 21415235 intron rgn + chr3L_4_21415001 chr3L_21415001 RAL-309 716 chr3L 21656996 21657027 chr3L 21657089 21657120 7 93 2.0 3.0 2.5 2.0 124 chr3L 21656996 intron CG43980 + chr3L 21657058 intron CG43980 + chr3L 21657120 intron CG43980 + chr3L_7_21655001 chr3L_21655001 RAL-309 717 chr3L 21712183 21712200 chr3L 21712262 21712277 4 77 7.0 10.0 8.5 0.4 94 chr3L 21712183 intergenic not near genes chr3L 21712230 intergenic not near genes chr3L 21712277 intergenic not near genes chr3L_4_21710001 chr3L_21710001 RAL-309 718 chr3L 21776677 21776702 chr3L 21776762 21776789 4 86 1.0 1.5 1.2 1.8 112 chr3L 21776677 intron,intron CG42689 +,CG42552 + chr3L 21776733 intron,intron CG42689 +,CG42552 + chr3L 21776789 intron,intron CG42689 +,CG42552 + chr3L_4_21775001 chr3L_21775001 RAL-309 719 chr3L 22124809 22124829 chr3L 22124892 22124912 4 82 3.5 0.5 2.0 1.3 103 chr3L 22124809 intergenic not near genes chr3L 22124860 intergenic not near genes chr3L 22124912 intergenic not near genes chr3L_4_22120001 chr3L_22120001 RAL-309 720 chr3L 22577632 22577648 chr3L 22582406 22582435 Doc 5 4780 2.0 2.5 2.2 1.6 4803 chr3L 22577632 intergenic not near genes chr3L 22580034 intergenic not near genes chr3L 22582435 3` UTR CG14459 - chr3L_5_22580001 chr3L_22580001 RAL-309 721 chr3L 22617190 22617210 chr3L 22624640 22624662 blood 4 7451 3.5 0.5 2.0 1.3 7472 chr3L 22617190 intron CG14459 - chr3L 22620926 intron CG14459 - chr3L 22624662 intron CG14459 - chr3L_4_22620001 chr3L_22620001 RAL-309 722 chr3L 22897206 22897226 chr3L 22897289 22897303 4 78 10.5 9.0 9.8 0.4 97 chr3L 22897206 intergenic not near genes chr3L 22897254 intergenic not near genes chr3L 22897303 intergenic not near genes chr3L_4_22895001 chr3L_22895001 RAL-309 723 chr3L 22909026 22909054 chr3L 22909113 22909142 5 89 5.0 6.0 5.5 0.8 116 chr3L 22909026 intergenic CR45661 + chr3L 22909084 intergenic CR45661 + chr3L 22909142 intergenic CR45661 + chr3L_5_22905001 chr3L_22905001 RAL-309 724 chr3L 23042231 23042248 chr3L 23048982 23048998 gypsy6 5 6747 6.0 7.5 6.8 0.6 6767 chr3L 23042231 intergenic not near genes chr3L 23045614 intergenic not near genes chr3L 23048998 intergenic not near genes chr3L_5_23045001 chr3L_23045001 RAL-309 725 chr3L 23088295 23088317 chr3L 23088377 23088399 5 77 2.5 0.5 1.5 2.0 104 chr3L 23088295 intergenic not near genes chr3L 23088347 intergenic not near genes chr3L 23088399 intergenic not near genes chr3L_5_23085001 chr3L_23085001 RAL-309 726 chr3L 23182822 23182851 chr3L 23182897 23182927 8 74 0.5 3.0 1.8 2.9 105 chr3L 23182822 intron CG34031 + chr3L 23182874 intron CG34031 + chr3L 23182927 intron CG34031 + chr3L_8_23180001 chr3L_23180001 RAL-309 727 chr3L 23285626 23285658 chr3L 23286303 23286337 4 679 2.0 4.0 3.0 1.0 711 chr3L 23285626 3` UTR nAChRalpha4 + chr3L 23285982 3` UTR nAChRalpha4 + chr3L 23286337 3` UTR nAChRalpha4 + chr3L_4_23285001 chr3L_23285001 RAL-309 728 chr3L 23288275 23288293 chr3L 23288954 23288972 INE-1 4 679 4.0 2.0 3.0 1.0 697 chr3L 23288275 intergenic not near genes chr3L 23288624 intergenic not near genes chr3L 23288972 intergenic not near genes chr3L_4_23285001 chr3L_23285001 RAL-309 729 chr3L 23450101 23450129 chr3L 23450603 23450631 9 500 3.5 3.5 3.5 2.0 530 chr3L 23450101 intergenic not near genes chr3L 23450366 intergenic not near genes chr3L 23450631 intergenic not near genes chr3L_9_23450001 chr3L_23450001 RAL-309 730 chr3L 24168786 24168819 chr3L 24176114 24176144 ZAM 4 7321 3.5 3.0 3.2 1.0 7358 chr3L 24168786 intron Snap25 + chr3L 24172465 intron Snap25 + chr3L 24176144 intron Snap25 + chr3L_4_24170001 chr3L_24170001 RAL-309 731 chr3L 27390698 27390712 chr3L 27390776 27390791 5 78 16.5 18.0 17.2 0.3 93 chr3L 27390698 intron Dbp80 + chr3L 27390744 intron Dbp80 + chr3L 27390791 intron Dbp80 + chr3L_5_27390001 chr3L_27390001 RAL-309 732 chr3R 1521172 1521181 chr3R 1521242 1521269 5 84 7.0 9.0 8.0 0.6 97 chr3R 1521172 intergenic not near genes chr3R 1521220 intergenic not near genes chr3R 1521269 intergenic not near genes chr3R_5_1520001 chr3R_1520001 RAL-309 733 chr3R 2446799 2446814 chr3R 2449049 2449063 1360 4 2250 24.5 18.5 21.5 0.2 2264 chr3R 2446799 intergenic not near genes chr3R 2447931 intergenic not near genes chr3R 2449063 intergenic not near genes chr3R_4_2445001 chr3R_2445001 RAL-309 734 chr3R 2534136 2534167 chr3R 2541701 2541723 7 7562 12.5 10.0 11.2 0.6 7587 chr3R 2534136 intergenic not near genes chr3R 2537930 intergenic not near genes chr3R 2541723 intergenic not near genes chr3R_7_2535001 chr3R_2535001 RAL-309 735 chr3R 4161511 4161566 chr3R 4161619 4161643 6 98 0.5 4.0 2.2 1.9 132 chr3R 4161511 3` UTR CG40198 - chr3R 4161577 3` UTR CG40198 - chr3R 4161643 exon CG40198 - chr3R_6_4160001 chr3R_4160001 RAL-309 736 chr3R 4206081 4206102 chr3R 4211648 4211677 mdg3 6 5573 2.0 2.5 2.2 1.9 5596 chr3R 4206081 intron CG14636 - chr3R 4208879 intron CG14636 - chr3R 4211677 intron CG14636 - chr3R_6_4205001 chr3R_4205001 RAL-309 737 chr3R 4408411 4408440 chr3R 4412714 4412743 Juan 9 4303 3.5 1.5 2.5 2.6 4332 chr3R 4408411 intron CG32944 - chr3R 4410577 intron CG32944 - chr3R 4412743 intron CG32944 - chr3R_9_4410001 chr3R_4410001 RAL-309 738 chr3R 4609545 4609581 chr3R 4610709 4610745 1360 11 1159 2.5 1.5 2.0 3.7 1200 chr3R 4609545 intergenic not near genes chr3R 4610145 intergenic not near genes chr3R 4610745 intergenic not near genes chr3R_11_4610001 chr3R_4610001 RAL-309 739 chr3R 4683180 4683208 chr3R 4684939 4684967 S-element 7 1758 1.5 2.0 1.8 2.5 1787 chr3R 4683180 intron CG43427 + chr3R 4684074 intron CG43427 + chr3R 4684967 intron CG43427 + chr3R_7_4680001 chr3R_4680001 RAL-309 740 chr3R 4753239 4753262 chr3R 4757542 4757562 F-element 9 4302 8.0 2.5 5.2 1.5 4323 chr3R 4753239 intron,intron atms +,CG44098 - chr3R 4755400 intron,intron atms +,CG44098 - chr3R 4757562 intron,exon atms +,CG44098 - chr3R_9_4755001 chr3R_4755001 RAL-309 741 chr3R 4769164 4769189 chr3R 4769237 4769267 8 75 5.0 2.0 3.5 1.8 103 chr3R 4769164 intron,intron atms +,CG44098 - chr3R 4769216 intron,intron atms +,CG44098 - chr3R 4769267 intron,intron atms +,CG44098 - chr3R_8_4765001 chr3R_4765001 RAL-309 742 chr3R 4784528 4784534 chr3R 4791402 4791418 6 6877 16.5 20.5 18.5 0.3 6890 chr3R 4784528 exon CG17387 - chr3R 4787973 exon ctrip - chr3R 4791418 exon ctrip - chr3R_6_4785001 chr3R_4785001 RAL-309 743 chr3R 4887481 4887510 chr3R 4894858 4894887 rover 8 7377 4.0 5.0 4.5 1.5 7406 chr3R 4887481 intergenic not near genes chr3R 4891184 intergenic not near genes chr3R 4894887 intergenic not near genes chr3R_8_4890001 chr3R_4890001 RAL-309 744 chr3R 4966021 4966036 chr3R 4966113 4966128 7 91 3.0 5.0 4.0 1.4 107 chr3R 4966021 intron CG1124 + chr3R 4966074 intron CG1124 + chr3R 4966128 intron CG1124 + chr3R_7_4965001 chr3R_4965001 RAL-309 745 chr3R 5067982 5068002 chr3R 5073496 5073519 mdg3 4 5516 3.5 2.5 3.0 1.0 5537 chr3R 5067982 intergenic not near genes chr3R 5070750 intergenic not near genes chr3R 5073519 intergenic not near genes chr3R_4_5070001 chr3R_5070001 RAL-309 746 chr3R 5278109 5278121 chr3R 5278180 5278202 4 72 3.5 4.5 4.0 0.8 93 chr3R 5278109 intron mtd - chr3R 5278156 intron mtd - chr3R 5278202 intron mtd - chr3R_4_5275001 chr3R_5275001 RAL-309 747 chr3R 5367148 5367177 chr3R 5367273 5367277 4 119 1.0 4.0 2.5 1.1 129 chr3R 5367148 intron Cerk - chr3R 5367212 intron Cerk - chr3R 5367277 intron Cerk - chr3R_4_5365001 chr3R_5365001 RAL-309 748 chr3R 5385975 5386005 chr3R 5386143 5386176 8 170 3.5 3.5 3.5 1.8 201 chr3R 5385975 intron kkv - chr3R 5386076 intron kkv - chr3R 5386176 intron kkv - chr3R_8_5385001 chr3R_5385001 RAL-309 749 chr3R 5445960 5445993 chr3R 5452420 5452453 Burdock 8 6459 0.5 3.0 1.8 2.9 6493 chr3R 5445960 intron CG14669 + chr3R 5449206 intron CG14669 + chr3R 5452453 intron CG14669 + chr3R_8_5445001 chr3R_5445001 RAL-309 750 chr3R 5515139 5515166 chr3R 5515216 5515243 6 77 7.5 7.5 7.5 0.7 104 chr3R 5515139 intron Nmdar1 - chr3R 5515191 intron Nmdar1 - chr3R 5515243 intron Nmdar1 - chr3R_6_5515001 chr3R_5515001 RAL-309 751 chr3R 5546952 5546967 chr3R 5547391 5547406 4 438 5.0 8.5 6.8 0.5 454 chr3R 5546952 intron CG2519 - chr3R 5547179 intron CG2519 - chr3R 5547406 5` UTR CG2519 - chr3R_4_5545001 chr3R_5545001 RAL-309 752 chr3R 5627153 5627181 chr3R 5627564 5627581 4 408 2.5 8.0 5.2 0.6 428 chr3R 5627153 intergenic not near genes chr3R 5627367 intergenic CG31551 + chr3R 5627581 intergenic CG31551 + chr3R_4_5625001 chr3R_5625001 RAL-309 753 chr3R 5746017 5746036 chr3R 5746258 5746277 pogo 6 239 4.0 4.0 4.0 1.2 260 chr3R 5746017 3` UTR Madm + chr3R 5746147 3` UTR Madm + chr3R 5746277 3` UTR Madm + chr3R_6_5745001 chr3R_5745001 RAL-309 754 chr3R 5809126 5809135 chr3R 5809366 5809376 pogo 4 240 3.0 8.0 5.5 0.6 250 chr3R 5809126 3` UTR CG11000 + chr3R 5809251 3` UTR CG11000 + chr3R 5809376 3` UTR CG11000 + chr3R_4_5805001 chr3R_5805001 RAL-309 755 chr3R 5822378 5822410 chr3R 5823545 5823576 1360 8 1165 1.0 2.0 1.5 3.2 1198 chr3R 5822378 3` UTR CG2023 - chr3R 5822977 3` UTR CG2023 - chr3R 5823576 3` UTR CG2023 - chr3R_8_5820001 chr3R_5820001 RAL-309 756 chr3R 5856382 5856409 chr3R 5856464 5856491 5 80 4.5 7.0 5.8 0.7 109 chr3R 5856382 intergenic disp -,ECSIT + chr3R 5856436 intergenic disp -,ECSIT + chr3R 5856491 intergenic ECSIT +,disp - chr3R_5_5855001 chr3R_5855001 RAL-309 757 chr3R 5895953 5895983 chr3R 5896167 5896196 5 213 4.0 5.0 4.5 0.9 243 chr3R 5895953 intron CG34113 - chr3R 5896074 intron CG34113 - chr3R 5896196 intron CG34113 - chr3R_5_5895001 chr3R_5895001 RAL-309 758 chr3R 5927568 5927590 chr3R 5927808 5927815 pogo 5 237 2.5 4.0 3.2 1.2 247 chr3R 5927568 intron CG34113 - chr3R 5927692 intron CG34113 - chr3R 5927815 intron CG34113 - chr3R_5_5925001 chr3R_5925001 RAL-309 759 chr3R 6015977 6015993 chr3R 6024447 6024473 Tirant 4 8473 2.0 2.0 2.0 1.3 8496 chr3R 6015977 intergenic not near genes chr3R 6020225 intergenic not near genes chr3R 6024473 intergenic not near genes chr3R_4_6020001 chr3R_6020001 RAL-309 760 chr3R 6048460 6048477 chr3R 6048539 6048555 5 81 2.5 7.5 5.0 0.8 95 chr3R 6048460 intergenic not near genes chr3R 6048508 intergenic not near genes chr3R 6048555 intergenic not near genes chr3R_5_6045001 chr3R_6045001 RAL-309 761 chr3R 6117418 6117444 chr3R 6117539 6117558 5 116 8.5 7.5 8.0 0.6 140 chr3R 6117418 intergenic not near genes chr3R 6117488 intergenic not near genes chr3R 6117558 intergenic not near genes chr3R_5_6115001 chr3R_6115001 RAL-309 762 chr3R 6175186 6175205 chr3R 6182458 6182463 HMS-Beagle2 5 7268 4.0 5.0 4.5 0.9 7277 chr3R 6175186 intergenic Osi1 + chr3R 6178824 intron CR45194 + chr3R 6182463 intergenic CR45194 + chr3R_5_6175001 chr3R_6175001 RAL-309 763 chr3R 6191184 6191201 chr3R 6191247 6191281 4 76 4.0 5.0 4.5 0.7 97 chr3R 6191184 intron NPFR + chr3R 6191232 intron NPFR + chr3R 6191281 intron NPFR + chr3R_4_6190001 chr3R_6190001 RAL-309 764 chr3R 6532113 6532139 chr3R 6532487 6532512 4 374 5.0 3.5 4.2 0.8 399 chr3R 6532113 intron dpr11 - chr3R 6532312 intron dpr11 - chr3R 6532512 intron dpr11 - chr3R_4_6530001 chr3R_6530001 RAL-309 765 chr3R 6550326 6550349 chr3R 6550406 6550420 5 73 6.0 6.5 6.2 0.7 94 chr3R 6550326 intron dpr11 - chr3R 6550373 intron dpr11 - chr3R 6550420 intron dpr11 - chr3R_5_6550001 chr3R_6550001 RAL-309 766 chr3R 6551109 6551139 chr3R 6551203 6551233 8 94 9.0 8.5 8.8 0.8 124 chr3R 6551109 intron dpr11 - chr3R 6551171 intron dpr11 - chr3R 6551233 intron dpr11 - chr3R_8_6550001 chr3R_6550001 RAL-309 767 chr3R 6918060 6918091 chr3R 6918138 6918168 5 77 7.5 7.5 7.5 0.6 108 chr3R 6918060 intron Antp - chr3R 6918114 intron Antp - chr3R 6918168 intron Antp - chr3R_5_6915001 chr3R_6915001 RAL-309 768 chr3R 6990468 6990493 chr3R 6990555 6990556 4 82 3.0 4.0 3.5 0.9 88 chr3R 6990468 intron Antp - chr3R 6990512 intron Antp - chr3R 6990556 intron Antp - chr3R_4_6990001 chr3R_6990001 RAL-309 769 chr3R 6991178 6991200 chr3R 6991254 6991276 10 75 4.5 1.0 2.8 2.6 98 chr3R 6991178 intron Antp - chr3R 6991227 intron Antp - chr3R 6991276 intron Antp - chr3R_10_6990001 chr3R_6990001 RAL-309 770 chr3R 7026861 7026889 chr3R 7026941 7026974 6 78 1.5 2.0 1.8 2.1 113 chr3R 7026861 intergenic not near genes chr3R 7026918 intergenic not near genes chr3R 7026974 intergenic not near genes chr3R_6_7025001 chr3R_7025001 RAL-309 771 chr3R 7103288 7103309 chr3R 7103359 7103362 7 69 6.0 2.5 4.2 1.3 74 chr3R 7103288 intron Alh - chr3R 7103325 intron Alh - chr3R 7103362 intron Alh - chr3R_7_7100001 chr3R_7100001 RAL-309 772 chr3R 7385594 7385614 chr3R 7385656 7385675 4 64 6.5 5.5 6.0 0.6 81 chr3R 7385594 intergenic not near genes chr3R 7385634 intergenic not near genes chr3R 7385675 intergenic not near genes chr3R_4_7385001 chr3R_7385001 RAL-309 773 chr3R 7556943 7556961 chr3R 7557027 7557054 6 90 11.0 7.5 9.2 0.6 111 chr3R 7556943 intergenic not near genes chr3R 7556998 intergenic not near genes chr3R 7557054 intergenic not near genes chr3R_6_7555001 chr3R_7555001 RAL-309 774 chr3R 7621528 7621564 chr3R 7621619 7621638 4 83 0.0 2.5 1.2 1.8 110 chr3R 7621528 intron CG34127 - chr3R 7621583 intron CG34127 - chr3R 7621638 intron CG34127 - chr3R_4_7620001 chr3R_7620001 RAL-309 775 chr3R 7655022 7655037 chr3R 7655104 7655119 4 82 4.0 5.0 4.5 0.7 97 chr3R 7655022 intergenic not near genes chr3R 7655070 intergenic not near genes chr3R 7655119 intergenic not near genes chr3R_4_7655001 chr3R_7655001 RAL-309 776 chr3R 7690351 7690369 chr3R 7690430 7690448 4 79 9.5 7.5 8.5 0.4 97 chr3R 7690351 intron Nlg1 + chr3R 7690400 intron Nlg1 + chr3R 7690448 intron Nlg1 + chr3R_4_7690001 chr3R_7690001 RAL-309 777 chr3R 7729477 7729493 chr3R 7737405 7737428 Stalker2 4 7933 2.5 2.5 2.5 1.1 7951 chr3R 7729477 intergenic not near genes chr3R 7733452 intergenic not near genes chr3R 7737428 intergenic not near genes chr3R_4_7730001 chr3R_7730001 RAL-309 778 chr3R 7740877 7740906 chr3R 7740961 7740989 4 82 5.0 6.0 5.5 0.6 112 chr3R 7740877 intergenic CR44935 + chr3R 7740933 intergenic CR44935 + chr3R 7740989 intergenic CR44935 + chr3R_4_7740001 chr3R_7740001 RAL-309 779 chr3R 8090270 8090293 chr3R 8090447 8090470 4 176 3.5 3.0 3.2 1.0 200 chr3R 8090270 5` UTR CR44330 + chr3R 8090370 intergenic CR44330 + chr3R 8090470 intergenic CR44330 + chr3R_4_8090001 chr3R_8090001 RAL-309 780 chr3R 8094411 8094437 chr3R 8099715 8099740 Transpac 7 5302 2.0 0.5 1.2 3.2 5329 chr3R 8094411 intron CG7900 + chr3R 8097076 intron CG7900 + chr3R 8099740 intron CG7900 + chr3R_7_8095001 chr3R_8095001 RAL-309 781 chr3R 8393584 8393600 chr3R 8393656 8393684 4 80 5.0 4.0 4.5 0.7 100 chr3R 8393584 intron CG45263 - chr3R 8393634 intron CG45263 - chr3R 8393684 intron CG45263 - chr3R_4_8390001 chr3R_8390001 RAL-309 782 chr3R 8403009 8403041 chr3R 8412175 8412204 roo 14 9161 3.5 1.0 2.2 4.4 9195 chr3R 8403009 intron CG45263 - chr3R 8407606 intron CG45263 - chr3R 8412204 intron CG45263 - chr3R_14_8405001 chr3R_8405001 RAL-309 783 chr3R 8434381 8434396 chr3R 8434467 8434488 5 90 7.0 12.5 9.8 0.5 107 chr3R 8434381 intron CG45263 - chr3R 8434434 intron CG45263 - chr3R 8434488 intron CG45263 - chr3R_5_8430001 chr3R_8430001 RAL-309 784 chr3R 8468002 8468013 chr3R 8468089 8468090 4 84 12.0 13.5 12.8 0.3 88 chr3R 8468002 intron CG45263 - chr3R 8468046 intron CG45263 - chr3R 8468090 intron CG45263 - chr3R_4_8465001 chr3R_8465001 RAL-309 785 chr3R 8552367 8552402 chr3R 8552446 8552455 4 67 8.0 7.5 7.8 0.5 88 chr3R 8552367 intergenic Or85d + chr3R 8552411 intergenic Or85d + chr3R 8552455 intergenic Or85d + chr3R_4_8550001 chr3R_8550001 RAL-309 786 chr3R 8570477 8570510 chr3R 8575112 8575146 HMS-Beagle 12 4635 1.0 3.0 2.0 4.0 4669 chr3R 8570477 intergenic not near genes chr3R 8572812 intergenic not near genes chr3R 8575146 intergenic not near genes chr3R_12_8570001 chr3R_8570001 RAL-309 787 chr3R 8685301 8685313 chr3R 8685401 8685413 4 100 4.5 1.0 2.8 1.1 112 chr3R 8685301 intron CR44937 - chr3R 8685357 intron CR44937 - chr3R 8685413 intron CR44937 - chr3R_4_8685001 chr3R_8685001 RAL-309 788 chr3R 8707367 8707382 chr3R 8709805 8709823 jockey 6 2440 2.5 8.5 5.5 0.9 2456 chr3R 8707367 intergenic not near genes chr3R 8708595 intergenic not near genes chr3R 8709823 intergenic not near genes chr3R_6_8705001 chr3R_8705001 RAL-309 789 chr3R 8798655 8798667 chr3R 8798738 8798750 4 81 4.0 2.5 3.2 1.0 95 chr3R 8798655 intron,intron Pif1A -,Pif1B - chr3R 8798702 intron,intron Pif1A -,Pif1B - chr3R 8798750 intron,intron Pif1A -,Pif1B - chr3R_4_8795001 chr3R_8795001 RAL-309 790 chr3R 8798671 8798686 chr3R 8798736 8798762 6 77 0.5 2.5 1.5 2.4 91 chr3R 8798671 intron,intron Pif1A -,Pif1B - chr3R 8798716 intron,intron Pif1A -,Pif1B - chr3R 8798762 intron,intron Pif1A -,Pif1B - chr3R_6_8795001 chr3R_8795001 RAL-309 791 chr3R 9053879 9053903 chr3R 9053969 9053993 4 90 11.0 8.5 9.8 0.4 114 chr3R 9053879 intron Kdm2 + chr3R 9053936 intron Kdm2 + chr3R 9053993 intron Kdm2 + chr3R_4_9050001 chr3R_9050001 RAL-309 792 chr3R 9319588 9319609 chr3R 9320009 9320044 jockey 5 420 1.0 1.0 1.0 2.5 456 chr3R 9319588 intron CG8861 - chr3R 9319816 intron CG8861 - chr3R 9320044 intron CG8861 - chr3R_5_9315001 chr3R_9315001 RAL-309 793 chr3R 9477459 9477481 chr3R 9477542 9477547 4 78 12.0 4.5 8.2 0.4 88 chr3R 9477459 intron CG16779 - chr3R 9477503 intron CG16779 - chr3R 9477547 intron CG16779 - chr3R_4_9475001 chr3R_9475001 RAL-309 794 chr3R 9516517 9516545 chr3R 9516592 9516616 9 74 9.0 10.5 9.8 0.8 99 chr3R 9516517 intron,intron CG8176 +,JHDM2 + chr3R 9516566 intron,intron CG8176 +,JHDM2 + chr3R 9516616 intron,intron CG8176 +,JHDM2 + chr3R_9_9515001 chr3R_9515001 RAL-309 795 chr3R 9670947 9670976 chr3R 9675648 9675661 4 4689 25.5 13.0 19.2 0.2 4714 chr3R 9670947 exon CG9492 - chr3R 9673304 exon CG9492 - chr3R 9675661 exon CG8358 + chr3R_4_9670001 chr3R_9670001 RAL-309 796 chr3R 9905386 9905396 chr3R 9905510 9905519 5 124 7.5 5.5 6.5 0.7 133 chr3R 9905386 intron Glut4EF + chr3R 9905452 intron Glut4EF + chr3R 9905519 intron Glut4EF + chr3R_5_9905001 chr3R_9905001 RAL-309 797 chr3R 10146684 10146712 chr3R 10146790 10146796 4 100 3.5 6.0 4.8 0.7 112 chr3R 10146684 intron Invadolysin + chr3R 10146740 intron Invadolysin + chr3R 10146796 intron Invadolysin + chr3R_4_10145001 chr3R_10145001 RAL-309 798 chr3R 10160331 10160351 chr3R 10164385 10164406 4 4054 22.5 11.5 17.0 0.2 4075 chr3R 10160331 exon CG6254 - chr3R 10162368 intron Best1 - chr3R 10164406 intron Best1 - chr3R_4_10160001 chr3R_10160001 RAL-309 799 chr3R 10273363 10273381 chr3R 10273473 10273491 4 108 11.5 7.5 9.5 0.4 128 chr3R 10273363 intron CG43143 + chr3R 10273427 intron CG43143 + chr3R 10273491 intron CG43143 + chr3R_4_10270001 chr3R_10270001 RAL-309 800 chr3R 10277137 10277161 chr3R 10277217 10277240 6 78 0.5 3.0 1.8 2.1 103 chr3R 10277137 intron CG43143 + chr3R 10277188 intron CG43143 + chr3R 10277240 intron CG43143 + chr3R_6_10275001 chr3R_10275001 RAL-309 801 chr3R 10357154 10357182 chr3R 10357237 10357265 4 80 5.0 6.0 5.5 0.6 111 chr3R 10357154 intron jumu + chr3R 10357210 intron jumu + chr3R 10357265 intron jumu + chr3R_4_10355001 chr3R_10355001 RAL-309 802 chr3R 10480857 10480880 chr3R 10480936 10480959 5 77 7.0 5.5 6.2 0.7 102 chr3R 10480857 intergenic not near genes chr3R 10480908 intergenic not near genes chr3R 10480959 intergenic not near genes chr3R_5_10480001 chr3R_10480001 RAL-309 803 chr3R 10745435 10745451 chr3R 10745513 10745538 4 85 8.0 7.5 7.8 0.5 103 chr3R 10745435 intron TkR86C - chr3R 10745486 intron TkR86C - chr3R 10745538 intron TkR86C - chr3R_4_10745001 chr3R_10745001 RAL-309 804 chr3R 10774177 10774185 chr3R 10774231 10774259 4 70 9.0 6.5 7.8 0.5 82 chr3R 10774177 intron,intron,3` UTR CG45076 -,fau -,CG45078 - chr3R 10774218 intron,intron,3` UTR CG45076 -,fau -,CG45078 - chr3R 10774259 intron,intron,3` UTR CG45076 -,fau -,CG45078 - chr3R_4_10770001 chr3R_10770001 RAL-309 805 chr3R 10785817 10785841 chr3R 10785896 10785920 6 78 1.5 1.5 1.5 2.4 103 chr3R 10785817 intron Rbp1 + chr3R 10785868 intron Rbp1 + chr3R 10785920 intron Rbp1 + chr3R_6_10785001 chr3R_10785001 RAL-309 806 chr3R 10920051 10920079 chr3R 10920127 10920149 5 76 2.0 3.0 2.5 1.4 98 chr3R 10920051 intergenic not near genes chr3R 10920100 intergenic not near genes chr3R 10920149 intergenic not near genes chr3R_5_10920001 chr3R_10920001 RAL-309 807 chr3R 10982831 10982861 chr3R 10982915 10982941 5 83 5.5 8.0 6.8 0.6 110 chr3R 10982831 intron CG34114 + chr3R 10982886 intron CG34114 + chr3R 10982941 intron CG34114 + chr3R_5_10980001 chr3R_10980001 RAL-309 808 chr3R 11102323 11102351 chr3R 11102403 11102415 5 77 9.5 11.0 10.2 0.4 92 chr3R 11102323 intergenic not near genes chr3R 11102369 intergenic not near genes chr3R 11102415 intergenic not near genes chr3R_5_11100001 chr3R_11100001 RAL-309 809 chr3R 11174605 11174613 chr3R 11175319 11175327 4 714 16.0 19.5 17.8 0.2 722 chr3R 11174605 exon Ugt86Dj - chr3R 11174966 intron Ugt86Dj - chr3R 11175327 exon Ugt86Dj - chr3R_4_11170001 chr3R_11170001 RAL-309 810 chr3R 11379236 11379258 chr3R 11388391 11388412 roo 9 9153 2.0 1.5 1.8 3.2 9176 chr3R 11379236 intron pros + chr3R 11383824 intron pros + chr3R 11388412 intron pros + chr3R_9_11380001 chr3R_11380001 RAL-309 811 chr3R 11708630 11708655 chr3R 11708838 11708863 5 207 2.5 1.5 2.0 1.7 233 chr3R 11708630 intergenic not near genes chr3R 11708746 intergenic not near genes chr3R 11708863 intergenic not near genes chr3R_5_11705001 chr3R_11705001 RAL-309 812 chr3R 11710220 11710236 chr3R 11710298 11710314 4 76 9.0 10.0 9.5 0.4 94 chr3R 11710220 intergenic not near genes chr3R 11710267 intergenic not near genes chr3R 11710314 intergenic not near genes chr3R_4_11710001 chr3R_11710001 RAL-309 813 chr3R 11713495 11713526 chr3R 11713573 11713606 4 80 9.5 5.5 7.5 0.5 111 chr3R 11713495 intergenic not near genes chr3R 11713550 intergenic not near genes chr3R 11713606 intergenic not near genes chr3R_4_11710001 chr3R_11710001 RAL-309 814 chr3R 11841085 11841095 chr3R 11846250 11846279 BS 5 5179 3.0 3.0 3.0 1.2 5194 chr3R 11841085 intron CG6959 - chr3R 11843682 intron CG6959 - chr3R 11846279 intron CG6959 - chr3R_5_11840001 chr3R_11840001 RAL-309 815 chr3R 11914375 11914399 chr3R 11914456 11914484 6 84 1.0 3.5 2.2 1.9 109 chr3R 11914375 intron Cad87A - chr3R 11914430 intron Cad87A - chr3R 11914484 intron Cad87A - chr3R_6_11910001 chr3R_11910001 RAL-309 816 chr3R 11919321 11919334 chr3R 11919397 11919420 4 79 5.5 3.0 4.2 0.8 99 chr3R 11919321 intron Cad87A - chr3R 11919370 intron Cad87A - chr3R 11919420 intron Cad87A - chr3R_4_11915001 chr3R_11915001 RAL-309 817 chr3R 12080869 12080896 chr3R 12080946 12080971 4 73 3.0 5.5 4.2 0.8 102 chr3R 12080869 intron CG14741 - chr3R 12080920 intron CG14741 - chr3R 12080971 intron CG14741 - chr3R_4_12080001 chr3R_12080001 RAL-309 818 chr3R 12097252 12097275 chr3R 12097356 12097377 5 102 6.0 8.5 7.2 0.6 125 chr3R 12097252 intron dpr17 + chr3R 12097314 intron dpr17 + chr3R 12097377 intron dpr17 + chr3R_5_12095001 chr3R_12095001 RAL-309 819 chr3R 12117523 12117547 chr3R 12117912 12117935 6 387 5.5 5.0 5.2 1.0 412 chr3R 12117523 intergenic not near genes chr3R 12117729 intergenic not near genes chr3R 12117935 intergenic not near genes chr3R_6_12115001 chr3R_12115001 RAL-309 820 chr3R 12119875 12119884 chr3R 12119974 12119978 4 96 3.0 1.5 2.2 1.2 103 chr3R 12119875 intergenic not near genes chr3R 12119926 intergenic not near genes chr3R 12119978 intergenic not near genes chr3R_4_12115001 chr3R_12115001 RAL-309 821 chr3R 12219891 12219910 chr3R 12219968 12219987 5 73 2.0 3.5 2.8 1.3 96 chr3R 12219891 3` UTR CG4860 - chr3R 12219939 3` UTR CG4860 - chr3R 12219987 3` UTR CG4860 - chr3R_5_12215001 chr3R_12215001 RAL-309 822 chr3R 12247140 12247171 chr3R 12247225 12247256 5 82 2.5 2.0 2.2 1.6 116 chr3R 12247140 intergenic not near genes chr3R 12247198 intergenic not near genes chr3R 12247256 intergenic not near genes chr3R_5_12245001 chr3R_12245001 RAL-309 823 chr3R 12299804 12299837 chr3R 12299897 12299923 7 92 6.0 7.5 6.8 0.9 119 chr3R 12299804 intron svp + chr3R 12299864 intron svp + chr3R 12299923 intron svp + chr3R_7_12295001 chr3R_12295001 RAL-309 824 chr3R 12314225 12314257 chr3R 12314339 12314371 9 112 8.0 4.5 6.2 1.2 146 chr3R 12314225 intergenic not near genes chr3R 12314298 intergenic not near genes chr3R 12314371 intergenic not near genes chr3R_9_12310001 chr3R_12310001 RAL-309 825 chr3R 12344134 12344155 chr3R 12344211 12344232 4 77 5.0 3.5 4.2 0.8 98 chr3R 12344134 intergenic not near genes chr3R 12344183 intergenic not near genes chr3R 12344232 intergenic not near genes chr3R_4_12340001 chr3R_12340001 RAL-309 826 chr3R 12441083 12441105 chr3R 12441145 12441186 6 72 8.5 11.5 10.0 0.5 103 chr3R 12441083 intron Desat1 + chr3R 12441134 intron Desat1 + chr3R 12441186 intron Desat1 + chr3R_6_12440001 chr3R_12440001 RAL-309 827 chr3R 12520688 12520711 chr3R 12520776 12520782 5 83 13.0 6.5 9.8 0.5 94 chr3R 12520688 intron Octbeta3R - chr3R 12520735 intron Octbeta3R - chr3R 12520782 intron Octbeta3R - chr3R_5_12520001 chr3R_12520001 RAL-309 828 chr3R 12568438 12568469 chr3R 12568512 12568545 4 74 5.5 6.0 5.8 0.6 107 chr3R 12568438 intron Octbeta2R - chr3R 12568492 intron Octbeta2R - chr3R 12568545 intron Octbeta2R - chr3R_4_12565001 chr3R_12565001 RAL-309 829 chr3R 12619127 12619156 chr3R 12619206 12619235 5 79 7.5 6.5 7.0 0.6 108 chr3R 12619127 intron CR44942 - chr3R 12619181 intron CR44942 - chr3R 12619235 3` UTR CR44942 - chr3R_5_12615001 chr3R_12615001 RAL-309 830 chr3R 12733496 12733508 chr3R 12733562 12733585 5 75 10.0 13.0 11.5 0.4 89 chr3R 12733496 intergenic not near genes chr3R 12733540 intergenic not near genes chr3R 12733585 intergenic not near genes chr3R_5_12730001 chr3R_12730001 RAL-309 831 chr3R 12886574 12886594 chr3R 12886708 12886735 4 139 2.0 3.5 2.8 1.1 161 chr3R 12886574 intergenic not near genes chr3R 12886654 intergenic not near genes chr3R 12886735 intergenic not near genes chr3R_4_12885001 chr3R_12885001 RAL-309 832 chr3R 12920166 12920178 chr3R 12925369 12925375 copia 5 5202 3.0 5.0 4.0 1.0 5209 chr3R 12920166 intron beat-Vb + chr3R 12922770 intron beat-Vb + chr3R 12925375 intron beat-Vb + chr3R_5_12920001 chr3R_12920001 RAL-309 833 chr3R 12931215 12931238 chr3R 12931292 12931313 5 75 4.5 3.0 3.8 1.0 98 chr3R 12931215 intron,3` UTR beat-Vb +,CR44236 - chr3R 12931264 intron,3` UTR beat-Vb +,CR44236 - chr3R 12931313 intron,3` UTR beat-Vb +,CR44236 - chr3R_5_12930001 chr3R_12930001 RAL-309 834 chr3R 13015761 13015773 chr3R 13015848 13015860 5 86 5.5 9.0 7.2 0.6 99 chr3R 13015761 intron CtBP + chr3R 13015810 intron CtBP + chr3R 13015860 intron CtBP + chr3R_5_13015001 chr3R_13015001 RAL-309 835 chr3R 13120775 13120797 chr3R 13120850 13120853 5 72 9.0 9.5 9.2 0.5 78 chr3R 13120775 intron timeout + chr3R 13120814 intron timeout + chr3R 13120853 intron timeout + chr3R_5_13120001 chr3R_13120001 RAL-309 836 chr3R 13143040 13143065 chr3R 13148616 13148620 mdg3 8 5573 2.0 4.5 3.2 1.9 5580 chr3R 13143040 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13145830 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13148620 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_8_13145001 chr3R_13145001 RAL-309 837 chr3R 13314109 13314130 chr3R 13318897 13318918 Doc 5 4787 0.5 6.0 3.2 1.2 4809 chr3R 13314109 intergenic not near genes chr3R 13316514 intergenic not near genes chr3R 13318918 intergenic CG45080 - chr3R_5_13315001 chr3R_13315001 RAL-309 838 chr3R 13323963 13323990 chr3R 13324072 13324101 6 111 8.5 7.0 7.8 0.7 138 chr3R 13323963 intergenic not near genes chr3R 13324032 intergenic not near genes chr3R 13324101 intergenic not near genes chr3R_6_13320001 chr3R_13320001 RAL-309 839 chr3R 13326933 13326959 chr3R 13327028 13327054 5 93 5.0 6.0 5.5 0.8 121 chr3R 13326933 intergenic not near genes chr3R 13326994 intergenic not near genes chr3R 13327054 intergenic not near genes chr3R_5_13325001 chr3R_13325001 RAL-309 840 chr3R 13356096 13356112 chr3R 13356180 13356196 4 82 5.5 8.5 7.0 0.5 100 chr3R 13356096 intergenic not near genes chr3R 13356146 intergenic not near genes chr3R 13356196 intergenic not near genes chr3R_4_13355001 chr3R_13355001 RAL-309 841 chr3R 13378853 13378866 chr3R 13378944 13378956 4 89 6.5 6.0 6.2 0.6 103 chr3R 13378853 intron CG9813 - chr3R 13378904 intron CG9813 - chr3R 13378956 intron CG9813 - chr3R_4_13375001 chr3R_13375001 RAL-309 842 chr3R 13514369 13514392 chr3R 13514445 13514468 4 76 5.0 4.5 4.8 0.7 99 chr3R 13514369 intergenic not near genes chr3R 13514418 intergenic not near genes chr3R 13514468 intergenic not near genes chr3R_4_13510001 chr3R_13510001 RAL-309 843 chr3R 13552305 13552323 chr3R 13552396 13552400 6 88 6.5 10.0 8.2 0.7 95 chr3R 13552305 intergenic not near genes chr3R 13552352 intergenic not near genes chr3R 13552400 intergenic not near genes chr3R_6_13550001 chr3R_13550001 RAL-309 844 chr3R 13668272 13668301 chr3R 13668352 13668372 5 77 9.0 9.5 9.2 0.5 100 chr3R 13668272 3` UTR Task6 - chr3R 13668322 3` UTR Task6 - chr3R 13668372 3` UTR Task6 - chr3R_5_13665001 chr3R_13665001 RAL-309 845 chr3R 13693028 13693028 chr3R 21907534 21907536 11 8214507 2.5 17.0 9.8 1.0 8214508 chr3R 13693028 3` UTR flfl + chr3R 17800282 exon CG17803 - chr3R 21907536 intergenic CG6678 + chr3R_11_17800001 chr3R_17800001 RAL-309 846 chr3R 13714522 13714545 chr3R 13714661 13714684 5 138 1.0 2.0 1.5 2.0 162 chr3R 13714522 intergenic CR34044 - chr3R 13714603 intergenic CR34044 - chr3R 13714684 intergenic CR34044 - chr3R_5_13710001 chr3R_13710001 RAL-309 847 chr3R 13736064 13736079 chr3R 13736154 13736154 5 85 5.0 4.0 4.5 0.9 90 chr3R 13736064 intron CG34383 + chr3R 13736109 intron CG34383 + chr3R 13736154 intron CG34383 + chr3R_5_13735001 chr3R_13735001 RAL-309 848 chr3R 13830186 13830200 chr3R 13830277 13830292 4 92 8.0 10.0 9.0 0.4 106 chr3R 13830186 intergenic not near genes chr3R 13830239 intergenic not near genes chr3R 13830292 intergenic not near genes chr3R_4_13830001 chr3R_13830001 RAL-309 849 chr3R 13872171 13872207 chr3R 13872250 13872286 4 78 4.0 2.5 3.2 1.0 115 chr3R 13872171 intron E5 - chr3R 13872228 intron E5 - chr3R 13872286 intron E5 - chr3R_4_13870001 chr3R_13870001 RAL-309 850 chr3R 13916322 13916336 chr3R 13916399 13916421 6 81 10.0 7.5 8.8 0.6 99 chr3R 13916322 intergenic not near genes chr3R 13916372 intergenic not near genes chr3R 13916421 intergenic not near genes chr3R_6_13915001 chr3R_13915001 RAL-309 851 chr3R 13941424 13941451 chr3R 13941505 13941529 4 80 4.0 1.0 2.5 1.1 105 chr3R 13941424 intergenic not near genes chr3R 13941476 intergenic not near genes chr3R 13941529 intergenic not near genes chr3R_4_13940001 chr3R_13940001 RAL-309 852 chr3R 13988268 13988290 chr3R 13988353 13988376 4 86 9.5 12.5 11.0 0.3 108 chr3R 13988268 intron rdx - chr3R 13988322 intron rdx - chr3R 13988376 intron rdx - chr3R_4_13985001 chr3R_13985001 RAL-309 853 chr3R 14136483 14136507 chr3R 14136610 14136634 4 128 4.0 8.5 6.2 0.6 151 chr3R 14136483 intergenic not near genes chr3R 14136558 intergenic not near genes chr3R 14136634 intergenic not near genes chr3R_4_14135001 chr3R_14135001 RAL-309 854 chr3R 14174955 14174991 chr3R 14175042 14175077 6 84 6.5 8.5 7.5 0.7 122 chr3R 14174955 3` UTR Dop1R1 - chr3R 14175016 3` UTR Dop1R1 - chr3R 14175077 3` UTR Dop1R1 - chr3R_6_14175001 chr3R_14175001 RAL-309 855 chr3R 14339619 14339639 chr3R 14339765 14339785 6 146 10.5 7.0 8.8 0.6 166 chr3R 14339619 intron NK7.1 - chr3R 14339702 intron NK7.1 - chr3R 14339785 intron NK7.1 - chr3R_6_14335001 chr3R_14335001 RAL-309 856 chr3R 14363733 14363753 chr3R 14363815 14363833 4 81 10.0 10.0 10.0 0.4 100 chr3R 14363733 intron NK7.1 - chr3R 14363783 intron NK7.1 - chr3R 14363833 intron NK7.1 - chr3R_4_14360001 chr3R_14360001 RAL-309 857 chr3R 14440733 14440755 chr3R 14440797 14440829 5 70 2.0 2.0 2.0 1.7 96 chr3R 14440733 intron cv-c - chr3R 14440781 intron cv-c - chr3R 14440829 intron cv-c - chr3R_5_14440001 chr3R_14440001 RAL-309 858 chr3R 14568304 14568331 chr3R 14568623 14568649 6 318 17.0 20.0 18.5 0.3 345 chr3R 14568304 3` UTR CG8066 - chr3R 14568476 exon CG8066 - chr3R 14568649 intron CG8066 - chr3R_6_14565001 chr3R_14565001 RAL-309 859 chr3R 14576419 14576439 chr3R 14576574 14576593 4 153 6.5 6.5 6.5 0.5 174 chr3R 14576419 exon CG44094 - chr3R 14576506 exon CG44094 - chr3R 14576593 exon CG44094 - chr3R_4_14575001 chr3R_14575001 RAL-309 860 chr3R 14577754 14577976 chr3R 14577832 14578077 5 104 7.0 7.5 7.2 0.6 323 chr3R 14577754 intron stumps + chr3R 14577916 intron stumps + chr3R 14578077 intron stumps + chr3R_5_14575001 chr3R_14575001 RAL-309 861 chr3R 14685787 14685804 chr3R 14685865 14685885 5 80 10.0 6.5 8.2 0.5 98 chr3R 14685787 intron Meltrin - chr3R 14685836 intron Meltrin - chr3R 14685885 intron Meltrin - chr3R_5_14685001 chr3R_14685001 RAL-309 862 chr3R 14779066 14779092 chr3R 14779146 14779172 5 80 4.5 7.5 6.0 0.7 106 chr3R 14779066 intron jvl + chr3R 14779119 intron jvl + chr3R 14779172 intron jvl + chr3R_5_14775001 chr3R_14775001 RAL-309 863 chr3R 15006858 15006887 chr3R 15007237 15007266 6 379 7.5 8.0 7.8 0.7 408 chr3R 15006858 intergenic not near genes chr3R 15007062 intergenic not near genes chr3R 15007266 intergenic not near genes chr3R_6_15005001 chr3R_15005001 RAL-309 864 chr3R 15037002 15037034 chr3R 15037085 15037111 7 83 6.0 8.5 7.2 0.9 109 chr3R 15037002 intergenic RpL10Aa + chr3R 15037056 intergenic RpL10Aa + chr3R 15037111 intergenic RpL10Aa + chr3R_7_15035001 chr3R_15035001 RAL-309 865 chr3R 15087777 15087797 chr3R 15087862 15087882 4 85 7.5 11.5 9.5 0.4 105 chr3R 15087777 intron CG6966 - chr3R 15087830 intron CG6966 - chr3R 15087882 intron CG6966 - chr3R_4_15085001 chr3R_15085001 RAL-309 866 chr3R 15088095 15088102 chr3R 15088193 15088198 5 97 10.0 9.5 9.8 0.5 103 chr3R 15088095 intron CG6966 - chr3R 15088146 intron CG6966 - chr3R 15088198 intron CG6966 - chr3R_5_15085001 chr3R_15085001 RAL-309 867 chr3R 15132062 15132086 chr3R 15135122 15135132 Juan 4 3056 3.0 3.5 3.2 1.0 3070 chr3R 15132062 intergenic CG42788 - chr3R 15133597 intergenic not near genes chr3R 15135132 intergenic CG6912 - chr3R_4_15130001 chr3R_15130001 RAL-309 868 chr3R 15156610 15156633 chr3R 15156690 15156714 9 79 5.0 3.5 4.2 1.7 104 chr3R 15156610 intron Gyc88E + chr3R 15156662 intron Gyc88E + chr3R 15156714 intron Gyc88E + chr3R_9_15155001 chr3R_15155001 RAL-309 869 chr3R 15286987 15286988 chr3R 21907534 21907535 7 6620547 13.0 17.0 15.0 0.4 6620548 chr3R 15286987 intron Tm1 + chr3R 18597261 intron,exon qin +,CG14304 - chr3R 21907535 intergenic CG6678 + chr3R_7_18595001 chr3R_18595001 RAL-309 870 chr3R 15302505 15302535 chr3R 15302583 15302583 6 72 7.5 5.5 6.5 0.8 78 chr3R 15302505 intron Tm1 + chr3R 15302544 intron Tm1 + chr3R 15302583 intron Tm1 + chr3R_6_15300001 chr3R_15300001 RAL-309 871 chr3R 15452284 15452304 chr3R 15452361 15452377 5 76 9.0 12.5 10.8 0.4 93 chr3R 15452284 intron AdamTS-A - chr3R 15452330 intron AdamTS-A - chr3R 15452377 intron AdamTS-A - chr3R_5_15450001 chr3R_15450001 RAL-309 872 chr3R 15571515 15571538 chr3R 15571735 15571750 4 218 8.0 5.0 6.5 0.5 235 chr3R 15571515 intergenic not near genes chr3R 15571632 intergenic not near genes chr3R 15571750 intergenic not near genes chr3R_4_15570001 chr3R_15570001 RAL-309 873 chr3R 15573783 15573804 chr3R 15573894 15573915 5 110 9.5 6.0 7.8 0.6 132 chr3R 15573783 intergenic not near genes chr3R 15573849 intergenic not near genes chr3R 15573915 intergenic not near genes chr3R_5_15570001 chr3R_15570001 RAL-309 874 chr3R 15601166 15601196 chr3R 15608685 15608715 412 12 7518 3.5 2.0 2.8 3.2 7549 chr3R 15601166 intergenic not near genes chr3R 15604940 intergenic not near genes chr3R 15608715 intergenic not near genes chr3R_12_15600001 chr3R_15600001 RAL-309 875 chr3R 15618750 15618759 chr3R 15626224 15626233 blood 5 7474 0.5 3.0 1.8 1.8 7483 chr3R 15618750 intergenic not near genes chr3R 15622492 intergenic not near genes chr3R 15626233 intergenic not near genes chr3R_5_15620001 chr3R_15620001 RAL-309 876 chr3R 15676556 15676580 chr3R 15676634 15676659 4 78 2.0 1.5 1.8 1.4 103 chr3R 15676556 intron pxb + chr3R 15676608 intron pxb + chr3R 15676659 intron pxb + chr3R_4_15675001 chr3R_15675001 RAL-309 877 chr3R 15716854 15716872 chr3R 15716942 15716970 6 97 4.5 1.5 3.0 1.5 116 chr3R 15716854 intergenic CG31294 - chr3R 15716912 intergenic CG31294 - chr3R 15716970 intergenic CG31294 - chr3R_6_15715001 chr3R_15715001 RAL-309 878 chr3R 15808540 15808571 chr3R 15808635 15808667 6 96 4.0 8.0 6.0 0.9 127 chr3R 15808540 intron alpha-Man-IIb + chr3R 15808604 intron alpha-Man-IIb + chr3R 15808667 intron alpha-Man-IIb + chr3R_6_15805001 chr3R_15805001 RAL-309 879 chr3R 15892651 15892679 chr3R 15892732 15892760 8 81 9.0 4.5 6.8 1.0 109 chr3R 15892651 intron CG14877 - chr3R 15892706 intron CG14877 - chr3R 15892760 intron CG14877 - chr3R_8_15890001 chr3R_15890001 RAL-309 880 chr3R 16116631 16116651 chr3R 16116712 16116733 4 82 2.5 1.5 2.0 1.3 102 chr3R 16116631 intron Sb + chr3R 16116682 intron Sb + chr3R 16116733 intron Sb + chr3R_4_16115001 chr3R_16115001 RAL-309 881 chr3R 16158608 16158636 chr3R 16158726 16158731 7 112 3.5 2.0 2.8 1.8 123 chr3R 16158608 intron CG6006 + chr3R 16158670 intron CG6006 + chr3R 16158731 intron CG6006 + chr3R_7_16155001 chr3R_16155001 RAL-309 882 chr3R 16582907 16582919 chr3R 16582986 16582989 5 77 4.0 2.0 3.0 1.2 82 chr3R 16582907 intron Scp2 - chr3R 16582948 intron Scp2 - chr3R 16582989 intron Scp2 - chr3R_5_16580001 chr3R_16580001 RAL-309 883 chr3R 16756321 16756354 chr3R 16762511 16762543 diver 13 6190 5.0 1.5 3.2 3.1 6222 chr3R 16756321 intron bxd - chr3R 16759432 intron bxd - chr3R 16762543 intron bxd - chr3R_13_16755001 chr3R_16755001 RAL-309 884 chr3R 16765373 16765390 chr3R 16765443 16765467 4 75 6.5 7.5 7.0 0.5 94 chr3R 16765373 intron bxd - chr3R 16765420 intron,3` UTR bxd -,tre-1 - chr3R 16765467 intron,3` UTR bxd -,tre-1 - chr3R_4_16765001 chr3R_16765001 RAL-309 885 chr3R 17098933 17098953 chr3R 17099016 17099036 4 82 8.5 6.0 7.2 0.5 103 chr3R 17098933 intron cher - chr3R 17098984 intron cher - chr3R 17099036 intron cher - chr3R_4_17095001 chr3R_17095001 RAL-309 886 chr3R 17176678 17176690 chr3R 17176767 17176795 4 100 5.0 9.5 7.2 0.5 117 chr3R 17176678 intron Mur89F - chr3R 17176736 intron Mur89F - chr3R 17176795 intron Mur89F - chr3R_4_17175001 chr3R_17175001 RAL-309 887 chr3R 17186241 17186267 chr3R 17186322 17186348 7 79 10.0 10.5 10.2 0.6 107 chr3R 17186241 intron Mur89F - chr3R 17186294 intron Mur89F - chr3R 17186348 intron Mur89F - chr3R_7_17185001 chr3R_17185001 RAL-309 888 chr3R 17313376 17313395 chr3R 17313489 17313514 4 111 4.0 5.0 4.5 0.7 138 chr3R 17313376 intergenic not near genes chr3R 17313445 intergenic not near genes chr3R 17313514 intergenic not near genes chr3R_4_17310001 chr3R_17310001 RAL-309 889 chr3R 17329871 17329899 chr3R 17329971 17329999 4 100 9.0 11.0 10.0 0.4 128 chr3R 17329871 intron beat-IIa - chr3R 17329935 intron beat-IIa - chr3R 17329999 intron beat-IIa - chr3R_4_17325001 chr3R_17325001 RAL-309 890 chr3R 17498854 17498875 chr3R 17498996 17499016 4 141 6.0 7.0 6.5 0.5 162 chr3R 17498854 intron Dscam3 - chr3R 17498935 intron Dscam3 - chr3R 17499016 intron Dscam3 - chr3R_4_17495001 chr3R_17495001 RAL-309 891 chr3R 17702561 17702587 chr3R 17702676 17702702 9 115 2.5 6.5 4.5 1.6 141 chr3R 17702561 intron osa - chr3R 17702632 intron osa - chr3R 17702702 intron osa - chr3R_9_17700001 chr3R_17700001 RAL-309 892 chr3R 17881890 17881901 chr3R 17881983 17881994 4 93 4.5 4.0 4.2 0.8 104 chr3R 17881890 exon Rim - chr3R 17881942 intron Rim - chr3R 17881994 intron Rim - chr3R_4_17880001 chr3R_17880001 RAL-309 893 chr3R 17925866 17925883 chr3R 17927318 17927350 hobo 8 1461 5.0 4.5 4.8 1.4 1484 chr3R 17925866 intron cpo + chr3R 17926608 intron cpo + chr3R 17927350 intron cpo + chr3R_8_17925001 chr3R_17925001 RAL-309 894 chr3R 18025336 18025362 chr3R 18025416 18025443 4 80 2.5 2.5 2.5 1.1 107 chr3R 18025336 3` UTR CG7794 + chr3R 18025390 intergenic CG7794 + chr3R 18025443 intergenic CG7794 + chr3R_4_18025001 chr3R_18025001 RAL-309 895 chr3R 18061585 18061612 chr3R 18063152 18063180 F-element 5 1568 1.5 2.5 2.0 1.7 1595 chr3R 18061585 intergenic not near genes chr3R 18062382 intergenic not near genes chr3R 18063180 intergenic not near genes chr3R_5_18060001 chr3R_18060001 RAL-309 896 chr3R 18126212 18126229 chr3R 18126291 18126307 4 76 13.5 11.0 12.2 0.3 95 chr3R 18126212 intron sr + chr3R 18126260 intron sr + chr3R 18126307 intron sr + chr3R_4_18125001 chr3R_18125001 RAL-309 897 chr3R 18438414 18438436 chr3R 18438493 18438515 6 76 5.5 5.5 5.5 0.9 101 chr3R 18438414 intron fru - chr3R 18438464 intron fru - chr3R 18438515 intron fru - chr3R_6_18435001 chr3R_18435001 RAL-309 898 chr3R 18664106 18664113 chr3R 18664182 18664190 4 76 0.0 1.0 0.5 2.7 84 chr3R 18664106 intron Gos28 + chr3R 18664148 intron Gos28 + chr3R 18664190 intron Gos28 + chr3R_4_18660001 chr3R_18660001 RAL-309 899 chr3R 18781700 18781720 chr3R 18781772 18781796 6 70 3.0 3.5 3.2 1.4 96 chr3R 18781700 intron CG7720 - chr3R 18781748 intron CG7720 - chr3R 18781796 intron CG7720 - chr3R_6_18780001 chr3R_18780001 RAL-309 900 chr3R 18788745 18788768 chr3R 18788821 18788821 5 72 6.5 7.5 7.0 0.6 76 chr3R 18788745 intron CG7720 - chr3R 18788783 intron CG7720 - chr3R 18788821 intron CG7720 - chr3R_5_18785001 chr3R_18785001 RAL-309 901 chr3R 18932553 18932586 chr3R 18932727 18932747 4 170 7.5 8.5 8.0 0.4 194 chr3R 18932553 intron CG42613 + chr3R 18932650 intron CG42613 + chr3R 18932747 intron CG42613 + chr3R_4_18930001 chr3R_18930001 RAL-309 902 chr3R 19140273 19140296 chr3R 19140721 19140743 5 445 5.5 9.0 7.2 0.6 470 chr3R 19140273 3` UTR Ppcs - chr3R 19140508 3` UTR Ppcs - chr3R 19140743 3` UTR Ppcs - chr3R_5_19140001 chr3R_19140001 RAL-309 903 chr3R 19193009 19193013 chr3R 19197299 19197308 F-element 4 4298 0.5 5.0 2.8 1.1 4299 chr3R 19193009 intron CG31475 + chr3R 19195158 intron CG31475 + chr3R 19197308 intron CG31475 + chr3R_4_19195001 chr3R_19195001 RAL-309 904 chr3R 19340398 19340424 chr3R 19340474 19340501 7 74 5.5 4.0 4.8 1.2 103 chr3R 19340398 intergenic not near genes chr3R 19340450 intergenic not near genes chr3R 19340501 intergenic not near genes chr3R_7_19340001 chr3R_19340001 RAL-309 905 chr3R 19457915 19457916 chr3R 21907534 21907535 4 2449620 3.5 17.0 10.2 0.4 2449620 chr3R 19457915 3` UTR CG31221 + chr3R 20682725 intergenic not near genes chr3R 21907535 intergenic CG6678 + chr3R_4_20680001 chr3R_20680001 RAL-309 906 chr3R 19517934 19517947 chr3R 19518094 19518095 4 157 5.0 5.5 5.2 0.6 161 chr3R 19517934 intron Dys + chr3R 19518014 intron Dys + chr3R 19518095 intron Dys + chr3R_4_19515001 chr3R_19515001 RAL-309 907 chr3R 19604676 19604703 chr3R 19604809 19604834 4 132 3.5 2.5 3.0 1.0 158 chr3R 19604676 exon CG7342 + chr3R 19604755 intron CG7342 + chr3R 19604834 intron CG7342 + chr3R_4_19600001 chr3R_19600001 RAL-309 908 chr3R 19657678 19657693 chr3R 19657770 19657785 4 92 7.5 12.5 10.0 0.4 107 chr3R 19657678 5` UTR CG6184 - chr3R 19657732 5` UTR CG6184 - chr3R 19657785 5` UTR CG6184 - chr3R_4_19655001 chr3R_19655001 RAL-309 909 chr3R 19675348 19675362 chr3R 19675481 19675512 5 146 6.5 5.0 5.8 0.7 164 chr3R 19675348 intron Naam + chr3R 19675430 intron Naam + chr3R 19675512 intron Naam + chr3R_5_19675001 chr3R_19675001 RAL-309 910 chr3R 19894800 19894828 chr3R 19894876 19894894 5 74 6.0 11.0 8.5 0.5 94 chr3R 19894800 intron CG4733 + chr3R 19894847 intron CG4733 + chr3R 19894894 intron CG4733 + chr3R_5_19890001 chr3R_19890001 RAL-309 911 chr3R 20059484 20059501 chr3R 20059544 20059557 5 71 5.0 5.0 5.0 0.8 73 chr3R 20059484 intron CG4390 - chr3R 20059520 intron CG4390 - chr3R 20059557 intron CG4390 - chr3R_5_20055001 chr3R_20055001 RAL-309 912 chr3R 20109553 20109571 chr3R 20114759 20114777 copia 4 5205 0.5 3.5 2.0 1.3 5224 chr3R 20109553 intergenic not near genes chr3R 20112165 intergenic not near genes chr3R 20114777 intergenic CG10887 + chr3R_4_20110001 chr3R_20110001 RAL-309 913 chr3R 20156695 20156718 chr3R 20165865 20165888 roo 5 9167 5.0 2.0 3.5 1.1 9193 chr3R 20156695 intergenic not near genes chr3R 20161292 intergenic not near genes chr3R 20165888 intergenic not near genes chr3R_5_20160001 chr3R_20160001 RAL-309 914 chr3R 20195227 20195257 chr3R 20195311 20195336 5 80 6.5 8.0 7.2 0.6 109 chr3R 20195227 intergenic not near genes chr3R 20195282 intergenic not near genes chr3R 20195336 intergenic not near genes chr3R_5_20195001 chr3R_20195001 RAL-309 915 chr3R 20266516 20266540 chr3R 20272986 20273010 Burdock 5 6471 3.0 2.0 2.5 1.4 6494 chr3R 20266516 intron cic + chr3R 20269763 intron cic + chr3R 20273010 intron cic + chr3R_5_20265001 chr3R_20265001 RAL-309 916 chr3R 20384217 20384246 chr3R 20384310 20384341 5 91 7.0 9.0 8.0 0.6 124 chr3R 20384217 intron Gfrl - chr3R 20384279 intron Gfrl - chr3R 20384341 intron Gfrl - chr3R_5_20380001 chr3R_20380001 RAL-309 917 chr3R 20505433 20505453 chr3R 20507433 20507453 4 2000 16.5 11.0 13.8 0.3 2020 chr3R 20505433 exon Or92a + chr3R 20506443 intergenic Or92a + chr3R 20507453 3` UTR CG4288 - chr3R_4_20505001 chr3R_20505001 RAL-309 918 chr3R 20549514 20549530 chr3R 20549745 20549761 4 231 4.0 4.0 4.0 0.8 247 chr3R 20549514 intron Stat92E - chr3R 20549638 intron Stat92E - chr3R 20549761 intron Stat92E - chr3R_4_20545001 chr3R_20545001 RAL-309 919 chr3R 20789353 20789386 chr3R 20789460 20789484 6 104 8.5 9.5 9.0 0.6 131 chr3R 20789353 intron Syp + chr3R 20789418 intron Syp + chr3R 20789484 intron Syp + chr3R_6_20785001 chr3R_20785001 RAL-309 920 chr3R 20835298 20835318 chr3R 20835432 20835443 4 132 8.0 8.5 8.2 0.4 145 chr3R 20835298 exon Synd + chr3R 20835370 intron Synd + chr3R 20835443 intron Synd + chr3R_4_20835001 chr3R_20835001 RAL-309 921 chr3R 20870273 20870281 chr3R 20870352 20870366 4 84 13.0 12.0 12.5 0.3 93 chr3R 20870273 intergenic not near genes chr3R 20870320 intergenic not near genes chr3R 20870366 intergenic not near genes chr3R_4_20870001 chr3R_20870001 RAL-309 922 chr3R 20952783 20952793 chr3R 20952860 20952872 4 78 9.5 11.0 10.2 0.4 89 chr3R 20952783 intron Atpalpha + chr3R 20952828 intron Atpalpha + chr3R 20952872 intron Atpalpha + chr3R_4_20950001 chr3R_20950001 RAL-309 923 chr3R 21154548 21154585 chr3R 21154753 21154800 4 212 1.0 0.0 0.5 2.7 252 chr3R 21154548 intron SNF4Agamma + chr3R 21154674 intron SNF4Agamma + chr3R 21154800 intron SNF4Agamma + chr3R_4_21150001 chr3R_21150001 RAL-309 924 chr3R 21236480 21236502 chr3R 21236555 21236578 7 74 7.0 10.0 8.5 0.7 98 chr3R 21236480 intron e - chr3R 21236529 intron e - chr3R 21236578 intron e - chr3R_7_21235001 chr3R_21235001 RAL-309 925 chr3R 21240455 21240470 chr3R 21240545 21240561 4 91 8.0 7.0 7.5 0.5 106 chr3R 21240455 intergenic not near genes chr3R 21240508 intergenic not near genes chr3R 21240561 intergenic not near genes chr3R_4_21240001 chr3R_21240001 RAL-309 926 chr3R 21330870 21330901 chr3R 21330958 21330992 5 88 9.0 9.0 9.0 0.5 122 chr3R 21330870 intron CG16791 - chr3R 21330931 intron CG16791 - chr3R 21330992 intron CG16791 - chr3R_5_21330001 chr3R_21330001 RAL-309 927 chr3R 21472017 21472034 chr3R 21472098 21472114 6 81 2.0 1.0 1.5 2.4 97 chr3R 21472017 intergenic not near genes chr3R 21472066 intergenic not near genes chr3R 21472114 intergenic not near genes chr3R_6_21470001 chr3R_21470001 RAL-309 928 chr3R 21476836 21476845 chr3R 21476926 21476932 4 89 8.0 9.0 8.5 0.4 96 chr3R 21476836 intergenic not near genes chr3R 21476884 intergenic not near genes chr3R 21476932 intergenic not near genes chr3R_4_21475001 chr3R_21475001 RAL-309 929 chr3R 21520126 21520136 chr3R 21520220 21520230 4 94 1.0 2.5 1.8 1.4 104 chr3R 21520126 intergenic not near genes chr3R 21520178 intergenic not near genes chr3R 21520230 intergenic not near genes chr3R_4_21520001 chr3R_21520001 RAL-309 930 chr3R 21725669 21725692 chr3R 21725805 21725825 4 134 0.5 0.0 0.2 3.3 156 chr3R 21725669 intergenic not near genes chr3R 21725747 intergenic not near genes chr3R 21725825 intergenic not near genes chr3R_4_21725001 chr3R_21725001 RAL-309 931 chr3R 21761127 21761151 chr3R 21768517 21768543 mdg1 7 7388 2.5 6.0 4.2 1.3 7416 chr3R 21761127 exon CG42335 + chr3R 21764835 intron CG42335 + chr3R 21768543 exon CG42335 + chr3R_7_21760001 chr3R_21760001 RAL-309 932 chr3R 21883971 21883986 chr3R 21884048 21884063 6 76 9.0 10.0 9.5 0.6 92 chr3R 21883971 intron,3` UTR,3` UTR CR45046 -,CG31465 +,fit - chr3R 21884017 intron,3` UTR CR45046 -,fit - chr3R 21884063 intron,3` UTR CR45046 -,fit - chr3R_6_21880001 chr3R_21880001 RAL-309 933 chr3R 20177844 20177845 chr3R 21907534 21907534 7 1729689 2.5 17.0 9.8 0.6 1729690 chr3R 20177844 intergenic not near genes chr3R 21042689 intergenic Dhc93AB - chr3R 21907534 intergenic CG6678 + chr3R_7_21040001 chr3R_21040001 RAL-309 934 chr3R 21337429 21337429 chr3R 21907534 21907534 4 570105 4.0 17.0 10.5 0.3 570105 chr3R 21337429 intron CG16791 - chr3R 21622482 intron E2f - chr3R 21907534 intergenic CG6678 + chr3R_4_21620001 chr3R_21620001 RAL-309 935 chr3R 21907534 21907534 chr3R 28831801 28831802 22 6924268 18.5 16.0 17.2 1.2 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_22_25365001 chr3R_25365001 RAL-309 936 chr3R 8339246 8339247 chr3R 21907535 21907535 4 13568288 8.5 17.5 13.0 0.3 13568289 chr3R 8339246 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907535 intergenic CG6678 + chr3R_4_15120001 chr3R_15120001 RAL-309 937 chr3R 21337428 21337429 chr3R 21907535 21907535 5 570106 4.0 17.5 10.8 0.4 570107 chr3R 21337428 intron CG16791 - chr3R 21622482 intron E2f - chr3R 21907535 intergenic CG6678 + chr3R_5_21620001 chr3R_21620001 RAL-309 938 chr3R 21907535 21907535 chr3R 28831801 28831802 27 6924267 19.0 16.0 17.5 1.5 6924267 chr3R 21907535 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_27_25365001 chr3R_25365001 RAL-309 939 chr3R 20177845 20177845 chr3R 21907536 21907536 4 1729691 2.5 17.5 10.0 0.4 1729691 chr3R 20177845 intergenic not near genes chr3R 21042690 intergenic Dhc93AB - chr3R 21907536 intergenic CG6678 + chr3R_4_21040001 chr3R_21040001 RAL-309 940 chr3R 21907536 21907536 chr3R 28831801 28831802 35 6924266 18.5 16.0 17.2 1.9 6924266 chr3R 21907536 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831802 intron WASp - chr3R_35_25365001 chr3R_25365001 RAL-309 941 chr3R 22083652 22083673 chr3R 22083955 22083973 4 301 5.5 10.0 7.8 0.5 321 chr3R 22083652 intergenic CG13408 + chr3R 22083812 intergenic CG13408 + chr3R 22083973 intergenic CG13408 + chr3R_4_22080001 chr3R_22080001 RAL-309 942 chr3R 22346179 22346192 chr3R 22346265 22346278 5 85 3.5 2.0 2.8 1.3 99 chr3R 22346179 intergenic not near genes chr3R 22346228 intergenic not near genes chr3R 22346278 intergenic not near genes chr3R_5_22345001 chr3R_22345001 RAL-309 943 chr3R 22450546 22450573 chr3R 22453186 22453212 NOF 9 2639 2.5 5.0 3.8 1.9 2666 chr3R 22450546 intron CG34376 + chr3R 22451879 intron CG34376 + chr3R 22453212 intron CG34376 + chr3R_9_22450001 chr3R_22450001 RAL-309 944 chr3R 22502272 22502293 chr3R 22502372 22502373 4 95 12.0 17.0 14.5 0.3 101 chr3R 22502272 intron Octbeta1R + chr3R 22502322 intron Octbeta1R + chr3R 22502373 intron Octbeta1R + chr3R_4_22500001 chr3R_22500001 RAL-309 945 chr3R 22538445 22538467 chr3R 22538530 22538552 5 85 9.0 8.0 8.5 0.5 107 chr3R 22538445 intron CG5326 - chr3R 22538498 intron CG5326 - chr3R 22538552 intron CG5326 - chr3R_5_22535001 chr3R_22535001 RAL-309 946 chr3R 22648328 22648345 chr3R 22648407 22648424 4 79 17.0 11.5 14.2 0.3 96 chr3R 22648328 intron wake + chr3R 22648376 intron wake + chr3R 22648424 intron wake + chr3R_4_22645001 chr3R_22645001 RAL-309 947 chr3R 22663510 22663539 chr3R 22663587 22663616 4 76 10.5 14.5 12.5 0.3 106 chr3R 22663510 intron wake + chr3R 22663563 intron wake + chr3R 22663616 intron wake + chr3R_4_22660001 chr3R_22660001 RAL-309 948 chr3R 22684219 22684230 chr3R 22684285 22684306 5 73 7.5 9.5 8.5 0.5 87 chr3R 22684219 intergenic not near genes chr3R 22684262 intergenic not near genes chr3R 22684306 intergenic not near genes chr3R_5_22680001 chr3R_22680001 RAL-309 949 chr3R 22797762 22797934 chr3R 22797847 22798030 9 90 4.0 5.5 4.8 1.6 268 chr3R 22797762 intergenic not near genes chr3R 22797896 intergenic not near genes chr3R 22798030 intergenic not near genes chr3R_9_22795001 chr3R_22795001 RAL-309 950 chr3R 22871433 22871466 chr3R 22871532 22871545 9 92 2.5 3.0 2.8 2.4 112 chr3R 22871433 intergenic not near genes chr3R 22871489 intergenic not near genes chr3R 22871545 intergenic not near genes chr3R_9_22870001 chr3R_22870001 RAL-309 951 chr3R 22877323 22877330 chr3R 22877427 22877451 4 117 5.0 5.0 5.0 0.7 128 chr3R 22877323 intergenic not near genes chr3R 22877387 intergenic not near genes chr3R 22877451 intergenic not near genes chr3R_4_22875001 chr3R_22875001 RAL-309 952 chr3R 22880944 22880955 chr3R 22881082 22881093 4 138 3.5 0.0 1.8 1.4 149 chr3R 22880944 intergenic not near genes chr3R 22881018 intergenic not near genes chr3R 22881093 intergenic not near genes chr3R_4_22880001 chr3R_22880001 RAL-309 953 chr3R 23335435 23335463 chr3R 23335506 23335528 8 73 1.5 3.0 2.2 2.5 93 chr3R 23335435 intron pnt - chr3R 23335482 intron pnt - chr3R 23335528 intron pnt - chr3R_8_23335001 chr3R_23335001 RAL-309 954 chr3R 23540778 23540799 chr3R 23540869 23540890 5 91 7.0 12.5 9.8 0.5 112 chr3R 23540778 intergenic not near genes chr3R 23540834 intergenic not near genes chr3R 23540890 intergenic not near genes chr3R_5_23540001 chr3R_23540001 RAL-309 955 chr3R 23629449 23629469 chr3R 23629525 23629543 6 75 10.5 10.5 10.5 0.5 94 chr3R 23629449 intron CG31145 - chr3R 23629496 intron CG31145 - chr3R 23629543 intron CG31145 - chr3R_6_23625001 chr3R_23625001 RAL-309 956 chr3R 3586632 3586636 chr3R 23642154 23642193 5 20055530 8.0 8.0 8.0 0.6 20055561 chr3R 3586632 intron Parp - chr3R 13614412 intergenic not near genes chr3R 23642193 intron CG31145 - chr3R_5_13610001 chr3R_13610001 RAL-309 957 chr3R 23684714 23684728 chr3R 23685181 23685214 roo 5 473 2.5 3.5 3.0 1.2 500 chr3R 23684714 intron CG18754 + chr3R 23684964 intron CG18754 + chr3R 23685214 exon CG18754 + chr3R_5_23680001 chr3R_23680001 RAL-309 958 chr3R 23715844 23715874 chr3R 23716223 23716253 4 379 7.0 7.5 7.2 0.5 409 chr3R 23715844 intron nau - chr3R 23716048 intron nau - chr3R 23716253 intron nau - chr3R_4_23715001 chr3R_23715001 RAL-309 959 chr3R 23828409 23828444 chr3R 23828485 23828515 6 74 9.5 10.0 9.8 0.6 106 chr3R 23828409 intron CG34355 + chr3R 23828462 intron CG34355 + chr3R 23828515 intron CG34355 + chr3R_6_23825001 chr3R_23825001 RAL-309 960 chr3R 23865029 23865060 chr3R 23865118 23865137 5 86 1.5 1.5 1.5 2.0 108 chr3R 23865029 intron Pli - chr3R 23865083 intron Pli - chr3R 23865137 intron Pli - chr3R_5_23865001 chr3R_23865001 RAL-309 961 chr3R 23893787 23893817 chr3R 23893884 23893887 6 93 9.5 14.0 11.8 0.5 100 chr3R 23893787 intergenic sba -,tbrd-1 - chr3R 23893837 intergenic sba -,tbrd-1 - chr3R 23893887 intergenic sba - chr3R_6_23890001 chr3R_23890001 RAL-309 962 chr3R 23986531 23986554 chr3R 23986604 23986637 7 75 8.5 9.5 9.0 0.7 106 chr3R 23986531 5` UTR CG13603 - chr3R 23986584 intergenic CG13603 -,CG5902 + chr3R 23986637 intergenic CG5902 +,CG13603 - chr3R_7_23985001 chr3R_23985001 RAL-309 963 chr3R 24011666 24011680 chr3R 24011750 24011764 4 84 0.5 3.0 1.8 1.4 98 chr3R 24011666 intron KrT95D - chr3R 24011715 intron KrT95D - chr3R 24011764 intron KrT95D - chr3R_4_24010001 chr3R_24010001 RAL-309 964 chr3R 24072084 24072119 chr3R 24072522 24072538 jockey 5 431 2.5 0.0 1.2 2.3 454 chr3R 24072084 intron 4EHP - chr3R 24072311 intron 4EHP - chr3R 24072538 intron 4EHP - chr3R_5_24070001 chr3R_24070001 RAL-309 965 chr3R 24076931 24076942 chr3R 24078385 24078408 hobo 4 1460 1.5 5.0 3.2 1.0 1477 chr3R 24076931 intron 4EHP - chr3R 24077670 intron 4EHP - chr3R 24078408 intron 4EHP - chr3R_4_24075001 chr3R_24075001 RAL-309 966 chr3R 24173558 24173572 chr3R 24173640 24173654 4 82 5.5 0.5 3.0 1.0 96 chr3R 24173558 intron CG13606 + chr3R 24173606 intron CG13606 + chr3R 24173654 intron CG13606 + chr3R_4_24170001 chr3R_24170001 RAL-309 967 chr3R 24207223 24207246 chr3R 24212294 24212305 flea 4 5068 9.0 2.0 5.5 0.6 5082 chr3R 24207223 intron twin - chr3R 24209764 intron twin - chr3R 24212305 intron twin - chr3R_4_24205001 chr3R_24205001 RAL-309 968 chr3R 24426287 24426304 chr3R 24426543 24426556 4 256 5.5 4.5 5.0 0.7 269 chr3R 24426287 intron nAChRalpha1 - chr3R 24426422 intron nAChRalpha1 - chr3R 24426556 intron nAChRalpha1 - chr3R_4_24425001 chr3R_24425001 RAL-309 969 chr3R 24466469 24466497 chr3R 24466547 24466574 8 78 5.5 5.0 5.2 1.3 105 chr3R 24466469 intergenic not near genes chr3R 24466522 intergenic not near genes chr3R 24466574 intergenic not near genes chr3R_8_24465001 chr3R_24465001 RAL-309 970 chr3R 24477409 24477434 chr3R 24477484 24477512 8 75 5.5 6.0 5.8 1.2 103 chr3R 24477409 intergenic not near genes chr3R 24477460 intergenic not near genes chr3R 24477512 intergenic not near genes chr3R_8_24475001 chr3R_24475001 RAL-309 971 chr3R 24508930 24508938 chr3R 24509008 24509013 4 77 13.5 11.0 12.2 0.3 83 chr3R 24508930 intergenic nAChRbeta2 - chr3R 24508972 intergenic nAChRbeta2 - chr3R 24509013 intergenic nAChRbeta2 - chr3R_4_24505001 chr3R_24505001 RAL-309 972 chr3R 24670160 24670189 chr3R 24670244 24670272 5 84 0.5 2.5 1.5 2.0 112 chr3R 24670160 intron slo + chr3R 24670216 intron slo + chr3R 24670272 intron slo + chr3R_5_24670001 chr3R_24670001 RAL-309 973 chr3R 24726953 24726979 chr3R 24727029 24727055 6 75 9.5 8.0 8.8 0.6 102 chr3R 24726953 intron tok + chr3R 24727004 intron tok + chr3R 24727055 intron tok + chr3R_6_24725001 chr3R_24725001 RAL-309 974 chr3R 24736000 24736264 chr3R 24736076 24736357 8 103 3.0 2.5 2.8 2.1 357 chr3R 24736000 intron tok + chr3R 24736178 intron tok + chr3R 24736357 intron tok + chr3R_8_24735001 chr3R_24735001 RAL-309 975 chr3R 24912483 24912510 chr3R 24912562 24912591 6 81 1.0 0.5 0.8 3.3 108 chr3R 24912483 intergenic not near genes chr3R 24912537 intergenic CR44267 + chr3R 24912591 intergenic CR44267 + chr3R_6_24910001 chr3R_24910001 RAL-309 976 chr3R 24927133 24927156 chr3R 24931914 24931947 Doc 6 4787 2.5 1.5 2.0 2.0 4814 chr3R 24927133 intergenic Trf4-2 + chr3R 24929540 intergenic not near genes chr3R 24931947 intergenic CG11771 + chr3R_6_24925001 chr3R_24925001 RAL-309 977 chr3R 25004900 25004915 chr3R 25004983 25004998 6 81 3.5 3.0 3.2 1.4 98 chr3R 25004900 intron tnc + chr3R 25004949 intron tnc + chr3R 25004998 intron tnc + chr3R_6_25000001 chr3R_25000001 RAL-309 978 chr3R 25395235 25395262 chr3R 25395341 25395368 5 99 9.0 6.0 7.5 0.6 133 chr3R 25395235 intron Fur1 - chr3R 25395302 intron Fur1 - chr3R 25395368 intron Fur1 - chr3R_5_25395001 chr3R_25395001 RAL-309 979 chr3R 25425551 25425581 chr3R 25425670 25425678 4 113 6.5 2.5 4.5 0.7 127 chr3R 25425551 intron Fur1 - chr3R 25425614 intron Fur1 - chr3R 25425678 intron Fur1 - chr3R_4_25425001 chr3R_25425001 RAL-309 980 chr3R 25575075 25575087 chr3R 25575173 25575185 4 96 5.5 6.0 5.8 0.6 110 chr3R 25575075 intron msi + chr3R 25575130 intron msi + chr3R 25575185 intron msi + chr3R_4_25575001 chr3R_25575001 RAL-309 981 chr3R 25612851 25612864 chr3R 25612937 25612947 4 96 6.0 10.5 8.2 0.4 96 chr3R 25612851 intron Npl4 - chr3R 25612899 intron Npl4 - chr3R 25612947 intron Npl4 - chr3R_4_25610001 chr3R_25610001 RAL-309 982 chr3R 25661275 25661302 chr3R 25661353 25661381 7 78 6.5 5.5 6.0 1.0 106 chr3R 25661275 5` UTR Tnks - chr3R 25661328 intergenic Tnks -,CR45208 -,RASSF8 + chr3R 25661381 intergenic Tnks -,CR45208 -,RASSF8 + chr3R_7_25660001 chr3R_25660001 RAL-309 983 chr3R 25832714 25832724 chr3R 25841878 25841906 roo 5 9175 2.5 2.5 2.5 1.4 9192 chr3R 25832714 exon alpha4GT2 + chr3R 25837310 intron alpha4GT2 + chr3R 25841906 exon alpha4GT2 + chr3R_5_25835001 chr3R_25835001 RAL-309 984 chr3R 25956468 25956493 chr3R 25956553 25956579 4 85 7.5 4.0 5.8 0.6 111 chr3R 25956468 intergenic CCAP-R - chr3R 25956524 intergenic CCAP-R - chr3R 25956579 intergenic CCAP-R - chr3R_4_25955001 chr3R_25955001 RAL-309 985 chr3R 25962053 25962075 chr3R 25962149 25962169 5 95 8.0 6.0 7.0 0.6 116 chr3R 25962053 intron boss + chr3R 25962111 intron boss + chr3R 25962169 intron boss + chr3R_5_25960001 chr3R_25960001 RAL-309 986 chr3R 26093856 26093873 chr3R 26093934 26093938 5 75 8.0 10.5 9.2 0.5 82 chr3R 26093856 intron dys - chr3R 26093897 intron dys - chr3R 26093938 intron dys - chr3R_5_26090001 chr3R_26090001 RAL-309 987 chr3R 26126469 26126503 chr3R 26126623 26126635 4 145 4.0 4.0 4.0 0.8 166 chr3R 26126469 intron CG31324 + chr3R 26126552 intron CG31324 + chr3R 26126635 intron CG31324 + chr3R_4_26125001 chr3R_26125001 RAL-309 988 chr3R 26144711 26144723 chr3R 26144772 26144801 4 74 3.0 4.0 3.5 0.9 90 chr3R 26144711 intergenic not near genes chr3R 26144756 intergenic not near genes chr3R 26144801 intergenic not near genes chr3R_4_26140001 chr3R_26140001 RAL-309 989 chr3R 26226988 26227020 chr3R 26227095 26227121 7 101 7.5 11.0 9.2 0.7 133 chr3R 26226988 intergenic not near genes chr3R 26227054 intergenic not near genes chr3R 26227121 intergenic not near genes chr3R_7_26225001 chr3R_26225001 RAL-309 990 chr3R 26292106 26292136 chr3R 26292186 26292216 6 80 1.0 2.5 1.8 2.1 110 chr3R 26292106 intergenic not near genes chr3R 26292161 intergenic not near genes chr3R 26292216 intergenic not near genes chr3R_6_26290001 chr3R_26290001 RAL-309 991 chr3R 26529350 26529380 chr3R 26529433 26529463 5 82 7.5 7.0 7.2 0.6 113 chr3R 26529350 intron plum - chr3R 26529406 intron plum - chr3R 26529463 intron plum - chr3R_5_26525001 chr3R_26525001 RAL-309 992 chr3R 26542065 26542079 chr3R 26542138 26542170 4 82 7.5 6.5 7.0 0.5 105 chr3R 26542065 intron scrib + chr3R 26542118 intron scrib + chr3R 26542170 intron scrib + chr3R_4_26540001 chr3R_26540001 RAL-309 993 chr3R 26558326 26558360 chr3R 26565637 26565669 Stalker4 9 7307 0.5 2.5 1.5 3.6 7343 chr3R 26558326 intron scrib + chr3R 26561998 intron scrib + chr3R 26565669 intron scrib + chr3R_9_26560001 chr3R_26560001 RAL-309 994 chr3R 26607748 26607765 chr3R 26607824 26607837 6 75 3.0 5.5 4.2 1.2 89 chr3R 26607748 5` UTR CR44951 + chr3R 26607792 5` UTR CR44951 + chr3R 26607837 5` UTR CR44951 + chr3R_6_26605001 chr3R_26605001 RAL-309 995 chr3R 26642729 26642759 chr3R 26643121 26643153 jockey 9 391 4.0 2.0 3.0 2.2 424 chr3R 26642729 intergenic not near genes chr3R 26642941 intergenic not near genes chr3R 26643153 intergenic not near genes chr3R_9_26640001 chr3R_26640001 RAL-309 996 chr3R 26656639 26656647 chr3R 26656717 26656760 4 97 8.5 9.5 9.0 0.4 121 chr3R 26656639 intron,exon beat-VII -,Tb + chr3R 26656700 intron,exon beat-VII -,Tb + chr3R 26656760 intron,exon beat-VII -,Tb + chr3R_4_26655001 chr3R_26655001 RAL-309 997 chr3R 26770248 26770262 chr3R 26770322 26770339 4 76 5.5 5.5 5.5 0.6 91 chr3R 26770248 intergenic CR45563 + chr3R 26770294 intergenic CR45563 + chr3R 26770339 intergenic not near genes chr3R_4_26770001 chr3R_26770001 RAL-309 998 chr3R 26960734 26960763 chr3R 26960823 26960850 4 84 13.0 7.5 10.2 0.4 116 chr3R 26960734 intergenic Tsp97E - chr3R 26960792 intergenic Tsp97E - chr3R 26960850 intergenic Tsp97E - chr3R_4_26960001 chr3R_26960001 RAL-309 999 chr3R 27034798 27034805 chr3R 27034867 27034886 4 78 5.0 3.0 4.0 0.8 88 chr3R 27034798 intron RYa-R + chr3R 27034842 intron RYa-R + chr3R 27034886 intron RYa-R + chr3R_4_27030001 chr3R_27030001 RAL-309 1000 chr3R 27038610 27038623 chr3R 27038696 27038709 4 86 3.5 2.0 2.8 1.1 99 chr3R 27038610 intron RYa-R + chr3R 27038660 intron RYa-R + chr3R 27038709 intron RYa-R + chr3R_4_27035001 chr3R_27035001 RAL-309 1001 chr3R 27140516 27140539 chr3R 27148126 27148149 412 14 7608 4.5 7.0 5.8 2.1 7633 chr3R 27140516 intron CG6051 - chr3R 27144332 intron CG6051 - chr3R 27148149 intron CG6051 - chr3R_14_27140001 chr3R_27140001 RAL-309 1002 chr3R 27195581 27195608 chr3R 27195663 27195693 4 85 8.0 8.0 8.0 0.4 112 chr3R 27195581 intergenic not near genes chr3R 27195637 intergenic not near genes chr3R 27195693 intergenic not near genes chr3R_4_27195001 chr3R_27195001 RAL-309 1003 chr3R 27201829 27201845 chr3R 27201995 27202008 4 168 7.0 8.5 7.8 0.5 179 chr3R 27201829 intergenic not near genes chr3R 27201918 intergenic not near genes chr3R 27202008 intergenic not near genes chr3R_4_27200001 chr3R_27200001 RAL-309 1004 chr3R 27342791 27342824 chr3R 27351372 27351405 Tirant 5 8581 2.0 1.5 1.8 1.8 8614 chr3R 27342791 intron CG42534 + chr3R 27347098 intron CG42534 + chr3R 27351405 intron CG42534 + chr3R_5_27345001 chr3R_27345001 RAL-309 1005 chr3R 27377472 27377503 chr3R 27377560 27377567 4 82 5.0 5.5 5.2 0.6 95 chr3R 27377472 3` UTR side - chr3R 27377520 3` UTR side - chr3R 27377567 3` UTR side - chr3R_4_27375001 chr3R_27375001 RAL-309 1006 chr3R 27393753 27393778 chr3R 27393836 27393862 5 81 11.0 8.5 9.8 0.5 109 chr3R 27393753 intron side - chr3R 27393808 intron side - chr3R 27393862 intron side - chr3R_5_27390001 chr3R_27390001 RAL-309 1007 chr3R 27594734 27594768 chr3R 27594818 27594853 4 85 15.5 12.5 14.0 0.3 119 chr3R 27594734 intron CG5639 - chr3R 27594794 intron CG5639 - chr3R 27594853 intron CG5639 - chr3R_4_27590001 chr3R_27590001 RAL-309 1008 chr3R 27705363 27705367 chr3R 27705436 27705446 4 78 15.0 5.5 10.2 0.4 83 chr3R 27705363 exon CG12428 - chr3R 27705404 intron CG12428 - chr3R 27705446 intron CG12428 - chr3R_4_27705001 chr3R_27705001 RAL-309 1009 chr3R 27721902 27721931 chr3R 27722000 27722027 7 97 4.5 8.5 6.5 0.9 125 chr3R 27721902 intergenic not near genes chr3R 27721964 intergenic not near genes chr3R 27722027 intergenic not near genes chr3R_7_27720001 chr3R_27720001 RAL-309 1010 chr3R 27799939 27799963 chr3R 27800021 27800045 4 82 4.5 3.0 3.8 0.8 106 chr3R 27799939 intron CG34353 - chr3R 27799992 intron CG34353 - chr3R 27800045 intron CG34353 - chr3R_4_27795001 chr3R_27795001 RAL-309 1011 chr3R 27875698 27875731 chr3R 27882753 27882785 297 6 7052 1.5 2.5 2.0 2.0 7087 chr3R 27875698 intron CG34353 - chr3R 27879242 intron CG34353 - chr3R 27882785 intron CG34353 - chr3R_6_27875001 chr3R_27875001 RAL-309 1012 chr3R 28173678 28173703 chr3R 28181108 28181133 mdg1 5 7428 0.5 1.5 1.0 2.5 7455 chr3R 28173678 intron CG34354 + chr3R 28177406 intron CG34354 + chr3R 28181133 intron CG34354 + chr3R_5_28175001 chr3R_28175001 RAL-309 1013 chr3R 28253351 28253369 chr3R 28255853 28255863 jockey 7 2505 3.0 2.5 2.8 1.8 2512 chr3R 28253351 intergenic not near genes chr3R 28254607 intergenic not near genes chr3R 28255863 intergenic not near genes chr3R_7_28250001 chr3R_28250001 RAL-309 1014 chr3R 28352512 28352543 chr3R 28352852 28352883 4 340 6.5 11.0 8.8 0.4 371 chr3R 28352512 exon Or98b + chr3R 28352698 exon Or98b + chr3R 28352883 exon Or98b + chr3R_4_28350001 chr3R_28350001 RAL-309 1015 chr3R 28413859 28413884 chr3R 28413934 28413962 4 76 4.5 3.5 4.0 0.8 103 chr3R 28413859 intergenic not near genes chr3R 28413910 intergenic not near genes chr3R 28413962 intergenic not near genes chr3R_4_28410001 chr3R_28410001 RAL-309 1016 chr3R 28478489 28478515 chr3R 28478565 28478588 5 75 11.0 9.0 10.0 0.5 99 chr3R 28478489 intergenic not near genes chr3R 28478538 intergenic not near genes chr3R 28478588 intergenic not near genes chr3R_5_28475001 chr3R_28475001 RAL-309 1017 chr3R 28597493 28597523 chr3R 28597567 28597600 6 72 13.0 11.5 12.2 0.5 107 chr3R 28597493 intergenic not near genes chr3R 28597546 intergenic not near genes chr3R 28597600 intergenic Noa36 - chr3R_6_28595001 chr3R_28595001 RAL-309 1018 chr3R 28763903 28763922 chr3R 28771346 28771365 Stalker4 4 7443 0.0 0.0 0.0 4.0 7462 chr3R 28763903 intergenic not near genes chr3R 28767634 intergenic not near genes chr3R 28771365 intergenic not near genes chr3R_4_28765001 chr3R_28765001 RAL-309 1019 chr3R 28792873 28792903 chr3R 28797963 28797977 jockey 9 5090 3.5 3.5 3.5 2.0 5104 chr3R 28792873 intergenic not near genes chr3R 28795425 intergenic not near genes chr3R 28797977 intergenic not near genes chr3R_9_28795001 chr3R_28795001 RAL-309 1020 chr3R 21907534 21907535 chr3R 28831799 28831803 78 6924266 19.0 16.5 17.8 4.1 6924269 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831803 intron WASp - chr3R_78_25365001 chr3R_25365001 RAL-309 1021 chr3R 29012972 29012990 chr3R 29013058 29013077 5 87 1.5 3.5 2.5 1.4 105 chr3R 29012972 intron wat - chr3R 29013024 intron wat - chr3R 29013077 intron wat - chr3R_5_29010001 chr3R_29010001 RAL-309 1022 chr3R 21907534 21907536 chr3R 29013340 29013340 8 7105805 18.5 20.0 19.2 0.4 7105806 chr3R 21907534 intergenic CG6678 + chr3R 25460437 intron Fur1 - chr3R 29013340 intron wat - chr3R_8_25460001 chr3R_25460001 RAL-309 1023 chr3R 29054021 29054051 chr3R 29054097 29054127 5 76 0.0 1.5 0.8 2.8 106 chr3R 29054021 intergenic CG11842 +,CG11843 + chr3R 29054074 intergenic CG11842 +,CG11843 + chr3R 29054127 intergenic CG11842 +,CG11843 + chr3R_5_29050001 chr3R_29050001 RAL-309 1024 chr3R 29140046 29140077 chr3R 29140265 29140299 5 221 5.0 7.0 6.0 0.7 253 chr3R 29140046 intron CG14516 + chr3R 29140172 intron CG14516 + chr3R 29140299 intron CG14516 + chr3R_5_29140001 chr3R_29140001 RAL-309 1025 chr3R 29187696 29187721 chr3R 29187773 29187793 5 76 6.0 8.0 7.0 0.6 97 chr3R 29187696 intron CG14509 - chr3R 29187744 intron CG14509 - chr3R 29187793 intron CG14509 - chr3R_5_29185001 chr3R_29185001 RAL-309 1026 chr3R 29237246 29237283 chr3R 29239267 29239268 12 2013 18.5 1.5 10.0 1.1 2022 chr3R 29237246 exon CG11951 - chr3R 29238257 intron CG11951 - chr3R 29239268 exon CG31427 - chr3R_12_29235001 chr3R_29235001 RAL-309 1027 chr3R 29256270 29256297 chr3R 29256348 29256377 5 79 6.0 6.0 6.0 0.7 107 chr3R 29256270 intergenic CG45544 +,stg - chr3R 29256324 intergenic CG45544 + chr3R 29256377 intergenic CG45544 + chr3R_5_29255001 chr3R_29255001 RAL-309 1028 chr3R 29375988 29376247 chr3R 29376071 29376324 5 76 1.5 4.0 2.8 1.3 336 chr3R 29375988 intergenic not near genes chr3R 29376156 intergenic not near genes chr3R 29376324 intergenic not near genes chr3R_5_29375001 chr3R_29375001 RAL-309 1029 chr3R 29406618 29406650 chr3R 29407904 29407916 jockey 5 1281 2.0 3.0 2.5 1.4 1298 chr3R 29406618 intron Ptp99A + chr3R 29407267 intron Ptp99A + chr3R 29407916 intron Ptp99A + chr3R_5_29405001 chr3R_29405001 RAL-309 1030 chr3R 29472023 29472036 chr3R 29472104 29472127 4 86 3.0 6.5 4.8 0.7 104 chr3R 29472023 intron Ptp99A + chr3R 29472075 intron Ptp99A + chr3R 29472127 intron Ptp99A + chr3R_4_29470001 chr3R_29470001 RAL-309 1031 chr3R 29539433 29539457 chr3R 29539509 29539533 8 75 1.0 0.5 0.8 4.4 100 chr3R 29539433 intergenic not near genes chr3R 29539483 intergenic not near genes chr3R 29539533 intergenic not near genes chr3R_8_29535001 chr3R_29535001 RAL-309 1032 chr3R 29738281 29738286 chr3R 29739731 29739741 hobo 4 1458 2.0 3.0 2.5 1.1 1460 chr3R 29738281 5` UTR CG1969 + chr3R 29739011 intron CG1969 + chr3R 29739741 5` UTR CG1969 + chr3R_4_29735001 chr3R_29735001 RAL-309 1033 chr3R 29760369 29760384 chr3R 29761570 29761585 pogo 4 1197 1.0 2.5 1.8 1.4 1216 chr3R 29760369 intergenic not near genes chr3R 29760977 intergenic not near genes chr3R 29761585 intergenic not near genes chr3R_4_29760001 chr3R_29760001 RAL-309 1034 chr3R 29831813 29831841 chr3R 29831894 29831926 4 84 9.0 7.5 8.2 0.4 113 chr3R 29831813 exon Atg16 - chr3R 29831870 intron Atg16 - chr3R 29831926 exon Atg16 - chr3R_4_29830001 chr3R_29830001 RAL-309 1035 chr3R 29882022 29882053 chr3R 29891174 29891210 roo 6 9152 2.0 3.5 2.8 1.6 9188 chr3R 29882022 intron CG31038 + chr3R 29886616 intron CG31038 + chr3R 29891210 intron CG31038 + chr3R_6_29885001 chr3R_29885001 RAL-309 1036 chr3R 29968762 29968792 chr3R 29968946 29968976 6 184 7.5 4.5 6.0 0.9 214 chr3R 29968762 intron TkR99D - chr3R 29968869 intron TkR99D - chr3R 29968976 intron TkR99D - chr3R_6_29965001 chr3R_29965001 RAL-309 1037 chr3R 30082990 30083016 chr3R 30083066 30083092 4 76 1.5 1.5 1.5 1.6 102 chr3R 30082990 intron sima + chr3R 30083041 intron sima + chr3R 30083092 intron sima + chr3R_4_30080001 chr3R_30080001 RAL-309 1038 chr3R 30084859 30084886 chr3R 30086326 30086348 hobo 6 1464 2.0 3.0 2.5 1.7 1489 chr3R 30084859 intron sima + chr3R 30085604 intron sima + chr3R 30086348 intron sima + chr3R_6_30085001 chr3R_30085001 RAL-309 1039 chr3R 30099066 30099096 chr3R 30099143 30099174 6 79 2.5 2.0 2.2 1.9 108 chr3R 30099066 intron sima + chr3R 30099120 intron sima + chr3R 30099174 intron sima + chr3R_6_30095001 chr3R_30095001 RAL-309 1040 chr3R 30112962 30112977 chr3R 30113038 30113053 6 76 12.5 11.0 11.8 0.5 91 chr3R 30112962 intron sima + chr3R 30113008 intron sima + chr3R 30113053 intron sima + chr3R_6_30110001 chr3R_30110001 RAL-309 1041 chr3R 30210667 30210672 chr3R 30210740 30210752 5 78 0.0 4.5 2.2 1.6 85 chr3R 30210667 intergenic CecA1 +,Anp + chr3R 30210710 intergenic CecA1 +,Anp + chr3R 30210752 intergenic CecA1 +,Anp + chr3R_5_30210001 chr3R_30210001 RAL-309 1042 chr3R 30252304 30252349 chr3R 30252395 30252477 4 118 10.0 10.5 10.2 0.4 173 chr3R 30252304 exon CG9682 + chr3R 30252390 exon CG9682 + chr3R 30252477 exon CG9682 + chr3R_4_30250001 chr3R_30250001 RAL-309 1043 chr3R 30260371 30260383 chr3R 30260444 30260459 5 75 12.0 7.5 9.8 0.5 88 chr3R 30260371 intergenic not near genes chr3R 30260415 intergenic not near genes chr3R 30260459 intergenic not near genes chr3R_5_30260001 chr3R_30260001 RAL-309 1044 chr3R 30317343 30317357 chr3R 30324915 30324949 roo 4 7579 1.0 0.5 0.8 2.2 7606 chr3R 30317343 intron hdc + chr3R 30321146 intron hdc + chr3R 30324949 intron hdc + chr3R_4_30320001 chr3R_30320001 RAL-309 1045 chr3R 30330491 30330524 chr3R 30330570 30330603 11 74 1.5 1.0 1.2 5.0 112 chr3R 30330491 intron hdc + chr3R 30330547 intron hdc + chr3R 30330603 intron hdc + chr3R_11_30330001 chr3R_30330001 RAL-309 1046 chr3R 30375545 30375571 chr3R 30383170 30383196 412 4 7624 3.0 8.5 5.8 0.6 7651 chr3R 30375545 intergenic not near genes chr3R 30379370 intergenic not near genes chr3R 30383196 intergenic not near genes chr3R_4_30375001 chr3R_30375001 RAL-309 1047 chr3R 30396222 30396243 chr3R 30404487 30404509 roo 5 8265 3.5 3.0 3.2 1.2 8287 chr3R 30396222 intergenic not near genes chr3R 30400366 intergenic not near genes chr3R 30404509 5` UTR CR45570 + chr3R_5_30400001 chr3R_30400001 RAL-309 1048 chr3R 30422940 30422973 chr3R 30423038 30423070 10 90 5.5 4.5 5.0 1.7 130 chr3R 30422940 5` UTR,5` UTR CG2217 -,CG42740 - chr3R 30423005 intergenic CG15535 -,CG2217 -,CG42740 - chr3R 30423070 3` UTR CG15535 - chr3R_10_30420001 chr3R_30420001 RAL-309 1049 chr3R 30461499 30461515 chr3R 30461616 30461627 4 116 5.0 6.5 5.8 0.6 128 chr3R 30461499 intron CDase + chr3R 30461563 intron CDase + chr3R 30461627 intron CDase + chr3R_4_30460001 chr3R_30460001 RAL-309 1050 chr3R 30466709 30466727 chr3R 30466789 30466806 6 79 7.5 9.5 8.5 0.6 97 chr3R 30466709 intron PH4alphaEFB + chr3R 30466758 intron PH4alphaEFB + chr3R 30466806 intron PH4alphaEFB + chr3R_6_30465001 chr3R_30465001 RAL-309 1051 chr3R 30480472 30480513 chr3R 30482940 30482978 jockey 6 2457 2.5 2.0 2.2 1.9 2506 chr3R 30480472 intron PH4alphaEFB + chr3R 30481725 intron PH4alphaEFB + chr3R 30482978 intron PH4alphaEFB + chr3R_6_30480001 chr3R_30480001 RAL-309 1052 chr3R 30566756 30566774 chr3R 30566834 30566844 4 84 5.0 8.5 6.8 0.5 88 chr3R 30566756 intron tmod + chr3R 30566800 intron tmod + chr3R 30566844 intron tmod + chr3R_4_30565001 chr3R_30565001 RAL-309 1053 chr3R 30592506 30592538 chr3R 30592616 30592648 6 110 6.5 5.0 5.8 0.9 142 chr3R 30592506 intergenic CG2246 - chr3R 30592577 intergenic CG2246 - chr3R 30592648 intergenic CG2246 - chr3R_6_30590001 chr3R_30590001 RAL-309 1054 chr3R 30690161 30690189 chr3R 30690245 30690263 13 81 2.5 3.5 3.0 3.2 102 chr3R 30690161 intergenic Spn100A + chr3R 30690212 intergenic Spn100A + chr3R 30690263 intergenic Spn100A + chr3R_13_30690001 chr3R_30690001 RAL-309 1055 chr3R 30850254 30850265 chr3R 30850346 30850357 5 91 1.5 2.5 2.0 1.7 103 chr3R 30850254 intergenic not near genes chr3R 30850306 intergenic not near genes chr3R 30850357 intergenic not near genes chr3R_5_30850001 chr3R_30850001 RAL-309 1056 chr3R 30888921 30888941 chr3R 30893457 30893468 6 4529 14.0 12.0 13.0 0.4 4547 chr3R 30888921 exon Sap-r - chr3R 30891194 intergenic not near genes chr3R 30893468 intergenic not near genes chr3R_6_30890001 chr3R_30890001 RAL-309 1057 chr3R 30900537 30900548 chr3R 30900601 30900614 4 68 2.5 0.5 1.5 1.6 77 chr3R 30900537 3` UTR Cyp4c3 + chr3R 30900576 3` UTR Cyp4c3 + chr3R 30900614 3` UTR Cyp4c3 + chr3R_4_30900001 chr3R_30900001 RAL-309 1058 chr3R 30948078 30948109 chr3R 30948265 30948282 10 187 6.0 5.5 5.8 1.5 204 chr3R 30948078 intergenic not near genes chr3R 30948180 intergenic not near genes chr3R 30948282 intergenic not near genes chr3R_10_30945001 chr3R_30945001 RAL-309 1059 chr3R 31087109 31087132 chr3R 31087613 31087644 4 510 7.0 13.0 10.0 0.4 535 chr3R 31087109 intergenic not near genes chr3R 31087376 intergenic not near genes chr3R 31087644 intergenic not near genes chr3R_4_31085001 chr3R_31085001 RAL-309 1060 chr3R 31279371 31279405 chr3R 31285562 31285567 diver 4 6184 5.0 3.0 4.0 0.8 6196 chr3R 31279371 intergenic not near genes chr3R 31282469 intergenic not near genes chr3R 31285567 intergenic not near genes chr3R_4_31280001 chr3R_31280001 RAL-309 1061 chr3R 31413088 31413123 chr3R 31418288 31418323 copia 10 5199 3.5 1.0 2.2 3.1 5235 chr3R 31413088 intron Gprk2 + chr3R 31415706 intron Gprk2 + chr3R 31418323 intron Gprk2 + chr3R_10_31415001 chr3R_31415001 RAL-309 1062 chr3R 31426879 31426912 chr3R 31426971 31427004 6 91 2.0 2.0 2.0 2.0 125 chr3R 31426879 intron Gprk2 + chr3R 31426942 intron Gprk2 + chr3R 31427004 intron Gprk2 + chr3R_6_31425001 chr3R_31425001 RAL-309 1063 chr3R 31435362 31435388 chr3R 31435514 31435538 5 151 3.5 1.5 2.5 1.4 176 chr3R 31435362 intron Gprk2 + chr3R 31435450 intron Gprk2 + chr3R 31435538 intron Gprk2 + chr3R_5_31435001 chr3R_31435001 RAL-309 1064 chr3R 31691536 31691563 chr3R 31696299 31696321 Doc 12 4758 3.0 8.0 5.5 1.8 4785 chr3R 31691536 intergenic not near genes chr3R 31693928 intergenic not near genes chr3R 31696321 intergenic not near genes chr3R_12_31690001 chr3R_31690001 RAL-309 1065 chr3R 31829205 31829226 chr3R 31829283 31829304 5 78 6.5 6.0 6.2 0.7 99 chr3R 31829205 intron RhoGAP100F + chr3R 31829254 intron RhoGAP100F + chr3R 31829304 intron RhoGAP100F + chr3R_5_31825001 chr3R_31825001 RAL-309 1066 chr3R 31831535 31831552 chr3R 31831614 31831619 6 76 6.0 1.5 3.8 1.2 84 chr3R 31831535 intron RhoGAP100F + chr3R 31831577 intron RhoGAP100F + chr3R 31831619 intron RhoGAP100F + chr3R_6_31830001 chr3R_31830001 RAL-309 1067 chr3R 31917390 31917405 chr3R 31917501 31917507 4 109 9.5 9.5 9.5 0.4 117 chr3R 31917390 intron heph - chr3R 31917448 intron heph - chr3R 31917507 intron heph - chr3R_4_31915001 chr3R_31915001 RAL-309 1068 chr3R 31925691 31925717 chr3R 31925767 31925793 5 76 1.5 1.5 1.5 2.0 102 chr3R 31925691 intron heph - chr3R 31925742 intron heph - chr3R 31925793 intron heph - chr3R_5_31925001 chr3R_31925001 RAL-309 1069 chr3R 31966460 31966489 chr3R 31966543 31966574 6 84 10.5 9.0 9.8 0.6 114 chr3R 31966460 intron heph - chr3R 31966517 intron heph - chr3R 31966574 intron heph - chr3R_6_31965001 chr3R_31965001 RAL-309 1070 chr3R 31997994 31998005 chr3R 32005464 32005475 blood 4 7469 5.0 6.0 5.5 0.6 7481 chr3R 31997994 intron heph - chr3R 32001734 intron heph - chr3R 32005475 intron heph - chr3R_4_32000001 chr3R_32000001 RAL-309 1071 chr3R 32022343 32022357 chr3R 32022430 32022444 5 95 4.0 8.0 6.0 0.7 101 chr3R 32022343 5` UTR CR45557 + chr3R 32022394 5` UTR CR45557 + chr3R 32022444 5` UTR CR45557 + chr3R_5_32020001 chr3R_32020001 RAL-309 1072 chr4 293872 293900 chr4 294117 294134 4 238 1.0 0.5 0.8 2.2 262 chr4 293872 intron Syt7 - chr4 294003 intron Syt7 - chr4 294134 intron Syt7 - chr4_4_290001 chr4_290001 RAL-309 1073 chr4 418234 418263 chr4 418328 418357 4 94 2.0 2.5 2.2 1.2 123 chr4 418234 intergenic not near genes chr4 418296 intergenic not near genes chr4 418357 intergenic not near genes chr4_4_415001 chr4_415001 RAL-309 1074 chr4 671605 671638 chr4 680188 680211 Tirant 9 8578 1.0 2.5 1.8 3.2 8606 chr4 671605 intron CG11360 + chr4 675908 intron CG11360 + chr4 680211 intron CG11360 + chr4_9_675001 chr4_675001 RAL-309 1075 chr4 959625 959653 chr4 959804 959825 4 175 0.5 1.5 1.0 2.0 200 chr4 959625 intergenic CR44030 +,CR45201 - chr4 959725 5` UTR CR44030 + chr4 959825 5` UTR CR44030 + chr4_4_955001 chr4_955001 RAL-309 1076 chrX 154370 154398 chrX 154452 154461 8 80 0.5 2.5 1.5 3.2 91 chrX 154370 intron tyn + chrX 154416 intron tyn + chrX 154461 intron tyn + chrX_8_150001 chrX_150001 RAL-309 1077 chrX 428418 428448 chrX 434603 434633 3S18 4 6184 2.0 1.0 1.5 1.6 6215 chrX 428418 intron CG32816 - chrX 431526 intron CG32816 - chrX 434633 intron CG32816 - chrX_4_430001 chrX_430001 RAL-309 1078 chrX 450374 450386 chrX 450452 450464 4 78 1.0 3.0 2.0 1.3 90 chrX 450374 intron CG32816 - chrX 450419 intron CG32816 - chrX 450464 intron CG32816 - chrX_4_450001 chrX_450001 RAL-309 1079 chrX 494605 494638 chrX 494697 494728 8 89 1.5 2.0 1.8 2.9 123 chrX 494605 intergenic CG17778 + chrX 494666 5` UTR CG17778 + chrX 494728 intron CG17778 + chrX_8_490001 chrX_490001 RAL-309 1080 chrX 616456 616486 chrX 616567 616595 7 110 1.5 1.5 1.5 2.8 139 chrX 616456 intron CG13366 - chrX 616526 intron CG13366 - chrX 616595 intron CG13366 - chrX_7_615001 chrX_615001 RAL-309 1081 chrX 680846 680870 chrX 680922 680953 10 80 2.5 1.0 1.8 3.6 107 chrX 680846 intergenic not near genes chrX 680900 intergenic not near genes chrX 680953 intergenic not near genes chrX_10_680001 chrX_680001 RAL-309 1082 chrX 706810 706827 chrX 707160 707191 7 359 0.0 2.0 1.0 3.5 381 chrX 706810 intron sdk + chrX 707000 intron sdk + chrX 707191 intron sdk + chrX_7_705001 chrX_705001 RAL-309 1083 chrX 718334 718358 chrX 718414 718438 6 77 0.5 3.5 2.0 2.0 104 chrX 718334 intron sdk + chrX 718386 intron sdk + chrX 718438 intron sdk + chrX_6_715001 chrX_715001 RAL-309 1084 chrX 778126 778160 chrX 778216 778250 5 88 1.5 1.0 1.2 2.3 124 chrX 778126 intron fz3 + chrX 778188 intron fz3 + chrX 778250 intron fz3 + chrX_5_775001 chrX_775001 RAL-309 1085 chrX 806785 806811 chrX 806880 806890 8 93 2.5 3.0 2.8 2.1 105 chrX 806785 intron Sec22 + chrX 806838 intron Sec22 + chrX 806890 intron Sec22 + chrX_8_805001 chrX_805001 RAL-309 1086 chrX 826382 826411 chrX 826543 826572 4 160 4.0 1.0 2.5 1.1 190 chrX 826382 intron CG43867 - chrX 826477 intron CG43867 - chrX 826572 intron CG43867 - chrX_4_825001 chrX_825001 RAL-309 1087 chrX 906701 906726 chrX 908490 908515 S-element 7 1787 5.5 4.5 5.0 1.2 1814 chrX 906701 intron CG43867 - chrX 907608 intron CG43867 - chrX 908515 intron CG43867 - chrX_7_905001 chrX_905001 RAL-309 1088 chrX 1357786 1357804 chrX 1367949 1367974 Doc 5 10169 3.0 2.5 2.8 1.3 10188 chrX 1357786 intergenic png - chrX 1362880 intergenic not near genes chrX 1367974 intergenic not near genes chrX_5_1360001 chrX_1360001 RAL-309 1089 chrX 1518042 1518058 chrX 1523444 1523450 jockey 4 5400 3.5 4.0 3.8 0.8 5408 chrX 1518042 intergenic inc + chrX 1520746 intergenic not near genes chrX 1523450 intergenic not near genes chrX_4_1520001 chrX_1520001 RAL-309 1090 chrX 1627983 1628007 chrX 1635444 1635465 gtwin 10 7459 2.5 7.0 4.8 1.7 7482 chrX 1627983 intron,intron Mur2B -,br + chrX 1631724 intron,intron Mur2B -,br + chrX 1635465 intron,intron Mur2B -,br + chrX_10_1630001 chrX_1630001 RAL-309 1091 chrX 1945804 1945829 chrX 1945885 1945913 6 82 4.0 3.0 3.5 1.3 109 chrX 1945804 intron Hr4 + chrX 1945858 intron Hr4 + chrX 1945913 intron Hr4 + chrX_6_1945001 chrX_1945001 RAL-309 1092 chrX 2146677 2146684 chrX 2146770 2146777 4 92 4.0 6.0 5.0 0.7 100 chrX 2146677 intron Pgd + chrX 2146727 intron Pgd + chrX 2146777 intron Pgd + chrX_4_2145001 chrX_2145001 RAL-309 1093 chrX 2208949 2208978 chrX 2209044 2209052 7 91 1.0 2.5 1.8 2.5 103 chrX 2208949 intron msta - chrX 2209000 intron msta - chrX 2209052 intron msta - chrX_7_2205001 chrX_2205001 RAL-309 1094 chrX 2664387 2664416 chrX 2665533 2665544 1360 6 1143 1.5 5.0 3.2 1.4 1157 chrX 2664387 intron sgg + chrX 2664966 intron sgg + chrX 2665544 intron sgg + chrX_6_2660001 chrX_2660001 RAL-309 1095 chrX 2744638 2744670 chrX 2744715 2744746 7 77 2.0 1.5 1.8 2.5 108 chrX 2744638 intron kirre + chrX 2744692 intron kirre + chrX 2744746 intron kirre + chrX_7_2740001 chrX_2740001 RAL-309 1096 chrX 2844897 2844931 chrX 2852307 2852341 mdg1 4 7410 1.0 0.0 0.5 2.7 7444 chrX 2844897 intron kirre + chrX 2848619 intron kirre + chrX 2852341 intron kirre + chrX_4_2845001 chrX_2845001 RAL-309 1097 chrX 2917419 2917431 chrX 2917573 2917588 5 156 4.0 1.5 2.8 1.3 169 chrX 2917419 intron kirre + chrX 2917504 intron kirre + chrX 2917588 intron kirre + chrX_5_2915001 chrX_2915001 RAL-309 1098 chrX 3005312 3005327 chrX 3005388 3005403 4 76 3.5 0.0 1.8 1.4 91 chrX 3005312 intron kirre + chrX 3005358 intron kirre + chrX 3005403 intron kirre + chrX_4_3005001 chrX_3005001 RAL-309 1099 chrX 3067935 3067966 chrX 3068021 3068053 5 88 1.5 4.0 2.8 1.3 118 chrX 3067935 intron kirre + chrX 3067994 intron kirre + chrX 3068053 intron kirre + chrX_5_3065001 chrX_3065001 RAL-309 1100 chrX 3408985 3409012 chrX 3409062 3409089 6 76 0.5 0.5 0.5 4.0 104 chrX 3408985 intron,intron CR44999 +,CG12535 - chrX 3409037 intron,intron CR44999 +,CG12535 - chrX 3409089 intron,intron CR44999 +,CG12535 - chrX_6_3405001 chrX_3405001 RAL-309 1101 chrX 3493089 3493125 chrX 3502248 3502261 roo 9 9149 2.0 0.5 1.2 4.1 9172 chrX 3493089 intron,intron CR44999 +,Gas8 - chrX 3497675 intron,intron CR44999 +,Gas8 - chrX 3502261 intron,intron CR44999 +,Gas8 - chrX_9_3495001 chrX_3495001 RAL-309 1102 chrX 3535409 3535432 chrX 3535500 3535523 4 91 1.0 1.0 1.0 2.0 114 chrX 3535409 intron CG32791 - chrX 3535466 intron CG32791 - chrX 3535523 intron CG32791 - chrX_4_3535001 chrX_3535001 RAL-309 1103 chrX 3597551 3597576 chrX 3619719 3619744 roo 6 22165 4.0 1.5 2.8 1.6 22193 chrX 3597551 intron AstA-R1 + chrX 3608648 intron AstA-R1 + chrX 3619744 intron AstA-R1 + chrX_6_3605001 chrX_3605001 RAL-309 1104 chrX 3726770 3726797 chrX 3730166 3730192 NOF 6 3395 2.0 0.5 1.2 2.7 3422 chrX 3726770 intron tlk + chrX 3728481 intron tlk + chrX 3730192 intron tlk + chrX_6_3725001 chrX_3725001 RAL-309 1105 chrX 3866104 3866137 chrX 3866182 3866214 9 78 0.0 0.5 0.2 7.5 110 chrX 3866104 intron yin - chrX 3866159 intron yin - chrX 3866214 intron yin - chrX_9_3865001 chrX_3865001 RAL-309 1106 chrX 4029539 4029547 chrX 4029727 4029737 5 189 5.0 6.0 5.5 0.8 198 chrX 4029539 intergenic not near genes chrX 4029638 intergenic not near genes chrX 4029737 intergenic not near genes chrX_5_4025001 chrX_4025001 RAL-309 1107 chrX 4101869 4101895 chrX 4101949 4101975 6 73 0.5 2.5 1.5 2.4 106 chrX 4101869 exon CG15375 + chrX 4101922 exon CG15375 + chrX 4101975 exon CG15375 + chrX_6_4100001 chrX_4100001 RAL-309 1108 chrX 4252952 4252979 chrX 4253037 4253067 6 83 2.5 1.5 2.0 2.0 115 chrX 4252952 intergenic CG15576 - chrX 4253010 intergenic CG15576 - chrX 4253067 intergenic CG15576 - chrX_6_4250001 chrX_4250001 RAL-309 1109 chrX 4337926 4337955 chrX 4338049 4338078 6 121 2.5 0.5 1.5 2.4 152 chrX 4337926 intron norpA + chrX 4338002 intron norpA + chrX 4338078 intron norpA + chrX_6_4335001 chrX_4335001 RAL-309 1110 chrX 4396986 4397007 chrX 4397071 4397089 4 84 2.5 2.0 2.2 1.2 103 chrX 4396986 intron CR32773 - chrX 4397038 intron CR32773 - chrX 4397089 intron CR32773 - chrX_4_4395001 chrX_4395001 RAL-309 1111 chrX 4990045 4990077 chrX 4997259 4997291 roo 4 7214 1.0 1.0 1.0 2.0 7246 chrX 4990045 intron CR44833 - chrX 4993668 intron CR44833 - chrX 4997291 intron CR44833 - chrX_4_4990001 chrX_4990001 RAL-309 1112 chrX 5096279 5096304 chrX 5103843 5103869 springer 7 7561 1.5 2.0 1.8 2.5 7590 chrX 5096279 intron,intron CG15465 +,rg + chrX 5100074 intron,intron CG15465 +,rg + chrX 5103869 intron,intron CG15465 +,rg + chrX_7_5100001 chrX_5100001 RAL-309 1113 chrX 5349274 5349299 chrX 5349351 5349370 5 73 1.5 1.0 1.2 2.3 96 chrX 5349274 intron SK + chrX 5349322 intron SK + chrX 5349370 intron SK + chrX_5_5345001 chrX_5345001 RAL-309 1114 chrX 5441990 5442019 chrX 5442097 5442127 6 108 2.5 1.0 1.8 2.1 137 chrX 5441990 intergenic not near genes chrX 5442058 intergenic not near genes chrX 5442127 intergenic not near genes chrX_6_5440001 chrX_5440001 RAL-309 1115 chrX 5798870 5798888 chrX 5799032 5799050 4 160 1.0 7.5 4.2 0.8 180 chrX 5798870 intergenic not near genes chrX 5798960 intergenic not near genes chrX 5799050 intergenic not near genes chrX_4_5795001 chrX_5795001 RAL-309 1116 chrX 5886460 5886478 chrX 5886729 5886748 6 269 2.5 3.0 2.8 1.6 288 chrX 5886460 intron CR45668 - chrX 5886604 intron CR45668 - chrX 5886748 intron CR45668 - chrX_6_5885001 chrX_5885001 RAL-309 1117 chrX 6037558 6037582 chrX 6037741 6037756 7 182 3.0 3.5 3.2 1.7 198 chrX 6037558 intron rux - chrX 6037657 intron rux - chrX 6037756 intron rux - chrX_7_6035001 chrX_6035001 RAL-309 1118 chrX 6041103 6041119 chrX 6041185 6041197 4 78 1.0 3.0 2.0 1.3 94 chrX 6041103 intron CG5937 + chrX 6041150 intron CG5937 + chrX 6041197 intron CG5937 + chrX_4_6040001 chrX_6040001 RAL-309 1119 chrX 6118696 6118733 chrX 6118778 6118815 8 79 0.5 0.5 0.5 5.3 119 chrX 6118696 intron Ca-alpha1T - chrX 6118756 intron Ca-alpha1T - chrX 6118815 intron Ca-alpha1T - chrX_8_6115001 chrX_6115001 RAL-309 1120 chrX 6171582 6171613 chrX 6179014 6179046 Quasimodo 8 7432 1.0 1.5 1.2 3.6 7464 chrX 6171582 intron Ca-alpha1T - chrX 6175314 intron Ca-alpha1T - chrX 6179046 intron Ca-alpha1T - chrX_8_6175001 chrX_6175001 RAL-309 1121 chrX 6263831 6263859 chrX 6263912 6263931 8 79 2.5 1.5 2.0 2.7 100 chrX 6263831 intron schlank - chrX 6263881 intron schlank - chrX 6263931 intron schlank - chrX_8_6260001 chrX_6260001 RAL-309 1122 chrX 6306552 6306569 chrX 6306629 6306644 4 76 1.0 1.5 1.2 1.8 92 chrX 6306552 3` UTR CG3823 + chrX 6306598 3` UTR CG3823 + chrX 6306644 3` UTR CG3823 + chrX_4_6305001 chrX_6305001 RAL-309 1123 chrX 6335225 6335243 chrX 6337735 6337753 Tirant 5 2510 0.0 5.0 2.5 1.4 2528 chrX 6335225 intergenic not near genes chrX 6336489 intergenic not near genes chrX 6337753 intergenic CG3842 + chrX_5_6335001 chrX_6335001 RAL-309 1124 chrX 6392875 6392900 chrX 6397640 6397665 Doc 5 4762 1.5 5.0 3.2 1.2 4790 chrX 6392875 intergenic not near genes chrX 6395270 intergenic not near genes chrX 6397665 intergenic not near genes chrX_5_6395001 chrX_6395001 RAL-309 1125 chrX 6562820 6562849 chrX 6571301 6571331 Tirant 5 8475 1.0 4.0 2.5 1.4 8511 chrX 6562820 intron CG34417 + chrX 6567076 intron CG34417 + chrX 6571331 intron CG34417 + chrX_5_6565001 chrX_6565001 RAL-309 1126 chrX 7023602 7023621 chrX 7030991 7031004 Tabor 6 7387 2.5 2.5 2.5 1.7 7402 chrX 7023602 intron CG12541 - chrX 7027303 intron CG12541 - chrX 7031004 intron CG12541 - chrX_6_7025001 chrX_7025001 RAL-309 1127 chrX 7702896 7702940 chrX 7703335 7703375 jockey 4 438 1.5 0.5 1.0 2.0 479 chrX 7702896 intron CHES-1-like - chrX 7703136 intron CHES-1-like - chrX 7703375 intron CHES-1-like - chrX_4_7700001 chrX_7700001 RAL-309 1128 chrX 7832436 7832461 chrX 7832525 7832539 5 86 0.0 2.0 1.0 2.5 103 chrX 7832436 intron CG1402 + chrX 7832488 intron CG1402 + chrX 7832539 intron CG1402 + chrX_5_7830001 chrX_7830001 RAL-309 1129 chrX 8421474 8421484 chrX 8421566 8421576 4 92 1.5 4.0 2.8 1.1 102 chrX 8421474 intron Trf2 + chrX 8421525 intron Trf2 + chrX 8421576 intron Trf2 + chrX_4_8420001 chrX_8420001 RAL-309 1130 chrX 8922335 8922361 chrX 8922769 8922795 jockey 11 430 2.5 3.0 2.8 2.9 460 chrX 8922335 intron rdgA + chrX 8922565 intron rdgA + chrX 8922795 intron rdgA + chrX_11_8920001 chrX_8920001 RAL-309 1131 chrX 9337943 9337967 chrX 9338034 9338059 7 91 2.5 2.5 2.5 2.0 116 chrX 9337943 intron CG34449 - chrX 9338001 intron CG34449 - chrX 9338059 exon CG34449 - chrX_7_9335001 chrX_9335001 RAL-309 1132 chrX 9508139 9508155 chrX 9509657 9509673 jockey 5 1517 4.5 3.5 4.0 1.0 1534 chrX 9508139 intron CG32700 - chrX 9508906 intron CG32700 - chrX 9509673 intron CG32700 - chrX_5_9505001 chrX_9505001 RAL-309 1133 chrX 9575806 9575823 chrX 9576113 9576142 mdg3 6 320 3.0 2.0 2.5 1.7 336 chrX 9575806 intron,exon CG32699 -,CG42395 - chrX 9575974 intron,intron CG32699 -,CG42395 - chrX 9576142 intron,5` UTR CG32699 -,CG42395 - chrX_6_9575001 chrX_9575001 RAL-309 1134 chrX 9599180 9599200 chrX 9599250 9599260 7 74 2.0 2.5 2.2 2.2 80 chrX 9599180 intergenic not near genes chrX 9599220 intergenic not near genes chrX 9599260 intergenic not near genes chrX_7_9595001 chrX_9595001 RAL-309 1135 chrX 9747271 9747279 chrX 9747331 9747363 5 75 1.5 2.0 1.8 1.8 92 chrX 9747271 intron Sp1 + chrX 9747317 intron Sp1 + chrX 9747363 intron Sp1 + chrX_5_9745001 chrX_9745001 RAL-309 1136 chrX 9791867 9791885 chrX 9791964 9791976 5 96 1.0 2.5 1.8 1.8 109 chrX 9791867 intron CG32698 + chrX 9791922 intron CG32698 + chrX 9791976 intron CG32698 + chrX_5_9790001 chrX_9790001 RAL-309 1137 chrX 9839364 9839380 chrX 9839433 9839462 4 78 0.0 2.0 1.0 2.0 98 chrX 9839364 intron CG32698 + chrX 9839413 intron CG32698 + chrX 9839462 intron CG32698 + chrX_4_9835001 chrX_9835001 RAL-309 1138 chrX 9847510 9847528 chrX 9847584 9847618 6 87 1.5 1.0 1.2 2.7 108 chrX 9847510 intron CG32698 + chrX 9847564 intron CG32698 + chrX 9847618 intron CG32698 + chrX_6_9845001 chrX_9845001 RAL-309 1139 chrX 10154287 10154309 chrX 10154363 10154385 7 75 1.5 2.5 2.0 2.3 98 chrX 10154287 intron,intron CR44894 -,CG12645 + chrX 10154336 intron,intron CR44894 -,CG12645 + chrX 10154385 intron,exon CR44894 -,CG12645 + chrX_7_10150001 chrX_10150001 RAL-309 1140 chrX 10204691 10204721 chrX 10204765 10204770 5 59 4.0 0.0 2.0 1.7 79 chrX 10204691 intron,5` UTR CR44894 -,CR32690 + chrX 10204730 intron,5` UTR CR44894 -,CR32690 + chrX 10204770 intron,5` UTR CR44894 -,CR32690 + chrX_5_10200001 chrX_10200001 RAL-309 1141 chrX 10446692 10446705 chrX 10446774 10446774 4 78 2.5 1.5 2.0 1.3 82 chrX 10446692 intron CG32683 - chrX 10446733 intron CG32683 - chrX 10446774 intron CG32683 - chrX_4_10445001 chrX_10445001 RAL-309 1142 chrX 10550859 10550883 chrX 10552326 10552336 hobo 6 1464 3.5 3.0 3.2 1.4 1477 chrX 10550859 intron spri - chrX 10551598 intron spri - chrX 10552336 intron spri - chrX_6_10550001 chrX_10550001 RAL-309 1143 chrX 10686049 10686084 chrX 10691186 10691221 roo 5 5132 0.0 2.0 1.0 2.5 5172 chrX 10686049 intron X11Lbeta + chrX 10688635 intron X11Lbeta + chrX 10691221 intron X11Lbeta + chrX_5_10685001 chrX_10685001 RAL-309 1144 chrX 10719127 10719149 chrX 10719211 10719233 4 83 0.0 1.0 0.5 2.7 106 chrX 10719127 intron CG32676 - chrX 10719180 intron CG32676 - chrX 10719233 intron CG32676 - chrX_4_10715001 chrX_10715001 RAL-309 1145 chrX 11312065 11312083 chrX 11319408 11319435 Stalker2 5 7349 5.0 1.5 3.2 1.2 7370 chrX 11312065 intergenic not near genes chrX 11315750 intergenic not near genes chrX 11319435 intergenic not near genes chrX_5_11315001 chrX_11315001 RAL-309 1146 chrX 11479872 11479898 chrX 11480182 11480209 4 310 2.0 1.5 1.8 1.4 337 chrX 11479872 intron Cyp4g15 + chrX 11480040 intron Cyp4g15 + chrX 11480209 intron Cyp4g15 + chrX_4_11480001 chrX_11480001 RAL-309 1147 chrX 11633415 11633450 chrX 11640469 11640497 297 7 7051 1.0 3.0 2.0 2.3 7082 chrX 11633415 intron Ptp10D + chrX 11636956 intron Ptp10D + chrX 11640497 intron Ptp10D + chrX_7_11635001 chrX_11635001 RAL-309 1148 chrX 12233601 12233615 chrX 12233682 12233696 4 81 1.5 4.0 2.8 1.1 95 chrX 12233601 intron Ten-a + chrX 12233648 intron Ten-a + chrX 12233696 intron Ten-a + chrX_4_12230001 chrX_12230001 RAL-309 1149 chrX 12375491 12375501 chrX 12375588 12375590 5 96 5.0 2.0 3.5 1.1 99 chrX 12375491 intergenic Ir11a - chrX 12375540 intergenic Ir11a - chrX 12375590 intergenic Ir11a - chrX_5_12375001 chrX_12375001 RAL-309 1150 chrX 12971688 12971713 chrX 12971764 12971788 6 74 2.5 3.0 2.8 1.6 100 chrX 12971688 intron,exon CR43636 -,CG15721 + chrX 12971738 intron,exon CR43636 -,CG15721 + chrX 12971788 intron,exon CR43636 -,CG15721 + chrX_6_12970001 chrX_12970001 RAL-309 1151 chrX 13146595 13146602 chrX 13146683 13146690 4 88 2.5 0.0 1.2 1.8 95 chrX 13146595 intron CG32645 + chrX 13146642 intron CG32645 + chrX 13146690 intron CG32645 + chrX_4_13145001 chrX_13145001 RAL-309 1152 chrX 13172352 13172381 chrX 13172428 13172457 5 76 2.0 1.5 1.8 1.8 105 chrX 13172352 exon CG34411 - chrX 13172404 intron CG34411 - chrX 13172457 intron CG34411 - chrX_5_13170001 chrX_13170001 RAL-309 1153 chrX 13229077 13229105 chrX 13229162 13229190 5 84 0.0 1.5 0.8 2.8 113 chrX 13229077 intron mew - chrX 13229134 intron mew - chrX 13229190 intron mew - chrX_5_13225001 chrX_13225001 RAL-309 1154 chrX 13236884 13236892 chrX 13236967 13236976 5 84 0.0 3.5 1.8 1.8 92 chrX 13236884 intron mew - chrX 13236930 intron mew - chrX 13236976 intron mew - chrX_5_13235001 chrX_13235001 RAL-309 1155 chrX 13374843 13374869 chrX 13374916 13374949 7 77 1.5 0.0 0.8 3.9 106 chrX 13374843 intron CG1640 + chrX 13374896 intron CG1640 + chrX 13374949 intron CG1640 + chrX_7_13370001 chrX_13370001 RAL-309 1156 chrX 13482359 13482393 chrX 13483220 13483236 11 856 5.5 16.5 11.0 0.9 877 chrX 13482359 intron Neto + chrX 13482798 intron Neto + chrX 13483236 exon Neto + chrX_11_13480001 chrX_13480001 RAL-309 1157 chrX 13482176 13482206 chrX 13483291 13483324 9 1115 21.0 22.0 21.5 0.4 1148 chrX 13482176 intron Neto + chrX 13482750 intron Neto + chrX 13483324 intron Neto + chrX_9_13480001 chrX_13480001 RAL-309 1158 chrX 13875982 13875990 chrX 13876046 13876068 4 76 0.0 1.0 0.5 2.7 86 chrX 13875982 intron mamo - chrX 13876025 intron mamo - chrX 13876068 intron mamo - chrX_4_13875001 chrX_13875001 RAL-309 1159 chrX 13894397 13894421 chrX 13894475 13894494 5 76 1.5 1.0 1.2 2.3 97 chrX 13894397 intron mamo - chrX 13894446 intron mamo - chrX 13894494 intron mamo - chrX_5_13890001 chrX_13890001 RAL-309 1160 chrX 13937983 13938009 chrX 13941254 13941280 I-element 5 3271 0.5 0.5 0.5 3.3 3297 chrX 13937983 intron mamo - chrX 13939632 intron mamo - chrX 13941280 intron mamo - chrX_5_13935001 chrX_13935001 RAL-309 1161 chrX 13943282 13943303 chrX 13943373 13943394 4 91 0.0 4.0 2.0 1.3 112 chrX 13943282 intron mamo - chrX 13943338 intron mamo - chrX 13943394 intron mamo - chrX_4_13940001 chrX_13940001 RAL-309 1162 chrX 14157595 14157623 chrX 14163252 14163268 297 5 5651 0.0 0.0 0.0 5.0 5673 chrX 14157595 intergenic not near genes chrX 14160432 intergenic not near genes chrX 14163268 intergenic not near genes chrX_5_14160001 chrX_14160001 RAL-309 1163 chrX 14407267 14407277 chrX 14407349 14407359 4 82 0.5 1.0 0.8 2.2 92 chrX 14407267 intron dpr8 + chrX 14407313 intron dpr8 + chrX 14407359 intron dpr8 + chrX_4_14405001 chrX_14405001 RAL-309 1164 chrX 14571555 14571580 chrX 14571748 14571773 6 191 2.0 1.0 1.5 2.4 218 chrX 14571555 intergenic not near genes chrX 14571664 intergenic not near genes chrX 14571773 intergenic not near genes chrX_6_14570001 chrX_14570001 RAL-309 1165 chrX 14636462 14636483 chrX 14641902 14641923 I-element 5 5439 3.5 3.5 3.5 1.1 5461 chrX 14636462 intron NetA - chrX 14639192 intron NetA - chrX 14641923 intron NetA - chrX_5_14635001 chrX_14635001 RAL-309 1166 chrX 14818787 14818797 chrX 14823968 14824001 copia 5 5195 2.5 1.5 2.0 1.7 5214 chrX 14818787 intron rut - chrX 14821394 intron rut - chrX 14824001 intron rut - chrX_5_14820001 chrX_14820001 RAL-309 1167 chrX 14936862 14936890 chrX 14946119 14946147 roo 4 9257 1.5 2.5 2.0 1.3 9285 chrX 14936862 intron pdgy - chrX 14941504 intron pdgy - chrX 14946147 intron pdgy - chrX_4_14940001 chrX_14940001 RAL-309 1168 chrX 15228512 15228527 chrX 15228758 15228773 5 246 2.0 3.0 2.5 1.4 261 chrX 15228512 intergenic CG9101 - chrX 15228642 intergenic CG9101 - chrX 15228773 3` UTR CG9101 - chrX_5_15225001 chrX_15225001 RAL-309 1169 chrX 15413048 15413078 chrX 15417350 15417376 Juan 4 4301 2.0 1.0 1.5 1.6 4328 chrX 15413048 intron Cngl - chrX 15415212 intron Cngl - chrX 15417376 intron Cngl - chrX_4_15415001 chrX_15415001 RAL-309 1170 chrX 15565649 15565663 chrX 15565730 15565748 5 84 0.0 1.0 0.5 3.3 99 chrX 15565649 intergenic not near genes chrX 15565698 intergenic not near genes chrX 15565748 intergenic not near genes chrX_5_15565001 chrX_15565001 RAL-309 1171 chrX 15681399 15681425 chrX 15681481 15681507 6 82 2.5 0.5 1.5 2.4 108 chrX 15681399 intergenic not near genes chrX 15681453 intergenic not near genes chrX 15681507 intergenic not near genes chrX_6_15680001 chrX_15680001 RAL-309 1172 chrX 16209405 16209418 chrX 16209492 16209505 4 87 1.5 0.0 0.8 2.2 100 chrX 16209405 intergenic not near genes chrX 16209455 intergenic not near genes chrX 16209505 intergenic not near genes chrX_4_16205001 chrX_16205001 RAL-309 1173 chrX 16407229 16407254 chrX 16407314 16407339 8 84 3.0 1.0 2.0 2.7 110 chrX 16407229 intron CG4301 + chrX 16407284 intron CG4301 + chrX 16407339 intron CG4301 + chrX_8_16405001 chrX_16405001 RAL-309 1174 chrX 16492645 16492679 chrX 16498222 16498233 mdg3 8 5573 1.0 0.5 0.8 4.4 5588 chrX 16492645 intron para - chrX 16495439 intron para - chrX 16498233 intron para - chrX_8_16495001 chrX_16495001 RAL-309 1175 chrX 16650927 16650955 chrX 16651004 16651032 6 76 1.5 0.0 0.8 3.3 105 chrX 16650927 intergenic CG32573 +,CG42512 + chrX 16650980 intergenic CG32573 +,CG42512 + chrX 16651032 intergenic CG32573 +,CG42512 + chrX_6_16650001 chrX_16650001 RAL-309 1176 chrX 16689626 16689631 chrX 16689711 16689717 4 86 2.5 0.5 1.5 1.6 91 chrX 16689626 intron Sep4 - chrX 16689672 intron Sep4 - chrX 16689717 intron Sep4 - chrX_4_16685001 chrX_16685001 RAL-309 1177 chrX 16833207 16833223 chrX 16833291 16833304 8 84 3.0 0.5 1.8 2.9 97 chrX 16833207 intron CG13004 - chrX 16833256 intron CG13004 - chrX 16833304 intron CG13004 - chrX_8_16830001 chrX_16830001 RAL-309 1178 chrX 16951338 16951352 chrX 16951401 16951422 5 68 2.0 0.5 1.2 2.3 84 chrX 16951338 exon RhoGAP15B + chrX 16951380 exon RhoGAP15B + chrX 16951422 exon RhoGAP15B + chrX_5_16950001 chrX_16950001 RAL-309 1179 chrX 17195209 17195231 chrX 17200295 17200316 flea 5 5084 2.0 0.5 1.2 2.3 5107 chrX 17195209 3` UTR baz + chrX 17197762 3` UTR baz + chrX 17200316 3` UTR baz + chrX_5_17195001 chrX_17195001 RAL-309 1180 chrX 17266624 17266654 chrX 17266720 17266746 8 89 3.0 0.5 1.8 2.9 122 chrX 17266624 intron f + chrX 17266685 intron f + chrX 17266746 intron f + chrX_8_17265001 chrX_17265001 RAL-309 1181 chrX 17352592 17352616 chrX 17352695 17352718 4 103 1.5 0.0 0.8 2.2 126 chrX 17352592 intergenic not near genes chrX 17352655 intergenic not near genes chrX 17352718 intergenic not near genes chrX_4_17350001 chrX_17350001 RAL-309 1182 chrX 17506715 17506721 chrX 17506773 17506796 5 70 1.5 2.0 1.8 1.8 81 chrX 17506715 intron CG43658 - chrX 17506756 intron CG43658 - chrX 17506796 intron CG43658 - chrX_5_17505001 chrX_17505001 RAL-309 1183 chrX 17545006 17545039 chrX 17545087 17545121 10 81 1.5 4.0 2.8 2.6 115 chrX 17545006 intron CG43658 - chrX 17545064 intron CG43658 - chrX 17545121 intron CG43658 - chrX_10_17545001 chrX_17545001 RAL-309 1184 chrX 17708848 17708857 chrX 17708925 17708936 6 78 0.0 4.0 2.0 2.0 88 chrX 17708848 intron CG8173 - chrX 17708892 intron CG8173 - chrX 17708936 intron CG8173 - chrX_6_17705001 chrX_17705001 RAL-309 1185 chrX 17782567 17782590 chrX 17782656 17782679 4 88 5.0 4.5 4.8 0.7 112 chrX 17782567 intergenic not near genes chrX 17782623 intergenic not near genes chrX 17782679 intergenic not near genes chrX_4_17780001 chrX_17780001 RAL-309 1186 chrX 17792959 17792981 chrX 17796257 17796279 flea 4 3298 1.0 2.0 1.5 1.6 3320 chrX 17792959 intron OdsH + chrX 17794619 intron OdsH + chrX 17796279 intron OdsH + chrX_4_17790001 chrX_17790001 RAL-309 1187 chrX 17875432 17875461 chrX 17875515 17875544 5 83 3.0 1.0 2.0 1.7 112 chrX 17875432 intron mnb - chrX 17875488 intron mnb - chrX 17875544 intron mnb - chrX_5_17875001 chrX_17875001 RAL-309 1188 chrX 17968898 17968919 chrX 17969016 17969036 4 118 1.5 0.0 0.8 2.2 138 chrX 17968898 intron Sh - chrX 17968967 intron Sh - chrX 17969036 intron Sh - chrX_4_17965001 chrX_17965001 RAL-309 1189 chrX 17999378 17999405 chrX 17999460 17999487 12 79 0.5 1.0 0.8 6.7 109 chrX 17999378 intron Sh - chrX 17999432 intron Sh - chrX 17999487 intron Sh - chrX_12_17995001 chrX_17995001 RAL-309 1190 chrX 18270059 18270069 chrX 18270144 18270156 5 86 3.5 3.0 3.2 1.2 97 chrX 18270059 intergenic not near genes chrX 18270108 intergenic not near genes chrX 18270156 intergenic not near genes chrX_5_18270001 chrX_18270001 RAL-309 1191 chrX 18374958 18374976 chrX 18375034 18375053 4 76 3.0 4.5 3.8 0.8 95 chrX 18374958 intron CrebB + chrX 18375006 intron CrebB + chrX 18375053 intron CrebB + chrX_4_18375001 chrX_18375001 RAL-309 1192 chrX 18467233 18467254 chrX 18467397 18467418 6 162 2.5 3.0 2.8 1.6 185 chrX 18467233 intron CG32547 - chrX 18467326 intron CG32547 - chrX 18467418 intron CG32547 - chrX_6_18465001 chrX_18465001 RAL-309 1193 chrX 18543087 18543112 chrX 18543329 18543354 5 242 1.0 2.0 1.5 2.0 267 chrX 18543087 intron Bx + chrX 18543220 intron Bx + chrX 18543354 intron Bx + chrX_5_18540001 chrX_18540001 RAL-309 1194 chrX 18645021 18645048 chrX 18645115 18645124 4 89 1.0 2.5 1.8 1.4 103 chrX 18645021 intron Rip11 - chrX 18645072 intron Rip11 - chrX 18645124 intron Rip11 - chrX_4_18645001 chrX_18645001 RAL-309 1195 chrX 18749872 18749902 chrX 18749956 18749986 5 83 0.5 2.0 1.2 2.3 114 chrX 18749872 intergenic not near genes chrX 18749929 intergenic not near genes chrX 18749986 intergenic not near genes chrX_5_18745001 chrX_18745001 RAL-309 1196 chrX 18896908 18896935 chrX 18896984 18897012 7 76 1.0 3.0 2.0 2.3 104 chrX 18896908 intergenic CG7349 + chrX 18896960 intergenic CG7349 + chrX 18897012 intergenic CG7349 + chrX_7_18895001 chrX_18895001 RAL-309 1197 chrX 19125697 19125721 chrX 19125824 19125850 5 126 0.0 2.5 1.2 2.3 153 chrX 19125697 intron tgy - chrX 19125774 intron tgy - chrX 19125850 intron tgy - chrX_5_19125001 chrX_19125001 RAL-309 1198 chrX 19380181 19380188 chrX 19380422 19380427 pogo 4 240 1.0 3.5 2.2 1.2 246 chrX 19380181 intron kek5 + chrX 19380304 intron kek5 + chrX 19380427 intron kek5 + chrX_4_19380001 chrX_19380001 RAL-309 1199 chrX 19593953 19593970 chrX 19594038 19594055 4 85 2.5 5.0 3.8 0.8 102 chrX 19593953 exon CG14205 + chrX 19594004 intron CG14205 + chrX 19594055 intron CG14205 + chrX_4_19590001 chrX_19590001 RAL-309 1200 chrX 19662034 19662043 chrX 19662257 19662265 6 223 1.0 3.5 2.2 1.9 231 chrX 19662034 intron CG14223 - chrX 19662150 intron CG14223 - chrX 19662265 intron CG14223 - chrX_6_19660001 chrX_19660001 RAL-309 1201 chrX 19710081 19710103 chrX 19711859 19711886 S-element 5 1780 2.0 4.5 3.2 1.2 1805 chrX 19710081 intron meso18E - chrX 19710984 intron meso18E - chrX 19711886 intron meso18E - chrX_5_19710001 chrX_19710001 RAL-309 1202 chrX 19822838 19822860 chrX 19823005 19823027 9 165 2.0 3.0 2.5 2.6 189 chrX 19822838 intergenic not near genes chrX 19822932 intergenic skpE - chrX 19823027 intergenic skpE - chrX_9_19820001 chrX_19820001 RAL-309 1203 chrX 19983878 19983898 chrX 19983957 19983977 4 77 2.0 1.0 1.5 1.6 99 chrX 19983878 intergenic not near genes chrX 19983928 intergenic not near genes chrX 19983977 intergenic not near genes chrX_4_19980001 chrX_19980001 RAL-309 1204 chrX 19992417 19992432 chrX 19992493 19992508 4 75 5.0 6.0 5.5 0.6 91 chrX 19992417 intergenic not near genes chrX 19992462 intergenic not near genes chrX 19992508 intergenic not near genes chrX_4_19990001 chrX_19990001 RAL-309 1205 chrX 19996171 19996190 chrX 19996271 19996290 5 100 4.5 0.5 2.5 1.4 119 chrX 19996171 intergenic not near genes chrX 19996230 intergenic not near genes chrX 19996290 intergenic not near genes chrX_5_19995001 chrX_19995001 RAL-309 1206 chrX 20105196 20105229 chrX 20105300 20105332 7 108 23.0 22.5 22.8 0.3 136 chrX 20105196 intergenic not near genes chrX 20105264 intergenic not near genes chrX 20105332 intergenic not near genes chrX_7_20105001 chrX_20105001 RAL-309 1207 chrX 20359147 20359170 chrX 20359217 20359236 7 73 1.0 1.0 1.0 3.5 89 chrX 20359147 intergenic not near genes chrX 20359192 intergenic not near genes chrX 20359236 intergenic not near genes chrX_7_20355001 chrX_20355001 RAL-309 1208 chrX 20377337 20377344 chrX 20378783 20378811 hobo 5 1457 4.0 3.5 3.8 1.0 1474 chrX 20377337 intergenic not near genes chrX 20378074 intergenic not near genes chrX 20378811 intergenic not near genes chrX_5_20375001 chrX_20375001 RAL-309 1209 chrX 20383879 20383906 chrX 20383959 20383969 6 74 2.0 3.0 2.5 1.7 90 chrX 20383879 intergenic not near genes chrX 20383924 intergenic not near genes chrX 20383969 intergenic not near genes chrX_6_20380001 chrX_20380001 RAL-309 1210 chrX 20435464 20435481 chrX 20435553 20435570 5 89 3.0 3.0 3.0 1.2 106 chrX 20435464 intron CG1695 + chrX 20435517 intron CG1695 + chrX 20435570 intron CG1695 + chrX_5_20435001 chrX_20435001 RAL-309 1211 chrX 20570776 20570796 chrX 20570860 20570874 4 83 0.0 1.0 0.5 2.7 98 chrX 20570776 intergenic not near genes chrX 20570825 intergenic not near genes chrX 20570874 intergenic not near genes chrX_4_20570001 chrX_20570001 RAL-309 1212 chrX 20575166 20575183 chrX 20575244 20575261 8 76 4.5 3.0 3.8 1.7 95 chrX 20575166 intergenic CG42580 + chrX 20575214 intergenic not near genes chrX 20575261 intergenic not near genes chrX_8_20575001 chrX_20575001 RAL-309 1213 chrX 20583728 20583758 chrX 20583899 20583900 6 166 2.0 0.5 1.2 2.7 172 chrX 20583728 intergenic not near genes chrX 20583814 intergenic not near genes chrX 20583900 intergenic not near genes chrX_6_20580001 chrX_20580001 RAL-309 1214 chrX 20890537 20890549 chrX 20890598 20890633 4 72 0.0 1.5 0.8 2.2 96 chrX 20890537 intron shakB - chrX 20890585 intron shakB - chrX 20890633 intron shakB - chrX_4_20890001 chrX_20890001 RAL-309 1215 chrX 20940718 20940748 chrX 20942187 20942217 hobo 11 1469 5.5 0.5 3.0 2.8 1499 chrX 20940718 intergenic not near genes chrX 20941468 intergenic not near genes chrX 20942217 intergenic not near genes chrX_11_20940001 chrX_20940001 RAL-309 1216 chrX 21029165 21029179 chrX 21029380 21029391 4 212 0.0 1.0 0.5 2.7 226 chrX 21029165 3` UTR CG1529 - chrX 21029278 3` UTR CG1529 - chrX 21029391 3` UTR CG1529 - chrX_4_21025001 chrX_21025001 RAL-309 1217 chrX 21086135 21086165 chrX 21087164 21087180 jockey 7 1026 0.0 2.5 1.2 3.2 1045 chrX 21086135 intergenic not near genes chrX 21086658 intergenic not near genes chrX 21087180 intergenic not near genes chrX_7_21085001 chrX_21085001 RAL-309 1218 chrX 21088046 21088073 chrX 21088178 21088189 5 128 1.0 1.0 1.0 2.5 143 chrX 21088046 intergenic not near genes chrX 21088118 intergenic not near genes chrX 21088189 intergenic not near genes chrX_5_21085001 chrX_21085001 RAL-309 1219 chrX 21197065 21197081 chrX 21197137 21197142 5 70 3.5 5.5 4.5 0.9 77 chrX 21197065 intergenic not near genes chrX 21197104 intergenic not near genes chrX 21197142 intergenic not near genes chrX_5_21195001 chrX_21195001 RAL-309 1220 chrX 22574813 22574831 chrX 22575047 22575066 4 235 0.5 0.5 0.5 2.7 253 chrX 22574813 intergenic not near genes chrX 22574940 intergenic not near genes chrX 22575066 intergenic not near genes chrX_4_22570001 chrX_22570001 RAL-309 1221 chrX 22564557 22564578 chrX 22575129 22575150 jockey 6 10574 8.0 3.5 5.8 0.9 10593 chrX 22564557 intergenic not near genes chrX 22569854 intergenic not near genes chrX 22575150 intergenic not near genes chrX_6_22565001 chrX_22565001 RAL-309 1222 chrX 22697494 22697521 chrX 22701791 22701818 Juan 8 4295 3.0 2.5 2.8 2.1 4324 chrX 22697494 intron CR44997 + chrX 22699656 intron CR44997 + chrX 22701818 intron CR44997 + chrX_8_22695001 chrX_22695001 RAL-309 1223 chrX 22811997 22812002 chrX 22816770 22816775 F-element 4 4773 3.5 2.5 3.0 1.0 4778 chrX 22811997 intergenic CG12446 - chrX 22814386 intergenic not near genes chrX 22816775 intergenic not near genes chrX_4_22810001 chrX_22810001 RAL-309 1224 chrX 22922519 22922540 chrX 22922599 22922619 4 79 1.5 2.5 2.0 1.3 100 chrX 22922519 intergenic not near genes chrX 22922569 intergenic not near genes chrX 22922619 intergenic not near genes chrX_4_22920001 chrX_22920001 RAL-309 1225 chrY 975796 975814 chrY 975876 975965 5 104 107.5 116.0 111.8 0.0 169 chrY 975796 intergenic not near genes chrY 975880 intergenic not near genes chrY 975965 intergenic not near genes chrY_5_975001 chrY_975001 RAL-309 1226 chrY 975815 975819 chrY 975873 975899 5 75 109.5 116.0 112.8 0.0 84 chrY 975815 intergenic not near genes chrY 975857 intergenic not near genes chrY 975899 intergenic not near genes chrY_5_975001 chrY_975001 RAL-309