SV#	Chr_5p	Chr_coord_5p_start	Chr_coord_5p_end	Chr_3p	Chr_coord_3p_start	Chr_coord_3p_end	repName	Reads_collapsed	avg_del_len	RefGen_3prime	Refgen_5prime	RefGen_Avg	Coverage_Ratio	size	Chr_5p	Chr_coord_5p	classification_5p	comment_5p	Chr_mid	Chr_coord_mid	classification_mid	comment_mid	Chr_3p	Chr_coord_3p	classification_3p	comment_3p	depletion_code	loci_code	libname
2	chr2L	47428	47442	chr2L	52576	52597	jockey	11	5154	32.0	16.0	24.0	0.4	5169	chr2L	47428	intron	Cda5 -	chr2L	50012	intron	Cda5 -	chr2L	52597	intron	Cda5 -	chr2L_11_50001	chr2L_50001	RAL-307_125b
3	chr2L	47443	47446	chr2L	52572	52601	jockey	6	5150	30.5	15.5	23.0	0.2	5158	chr2L	47443	intron	Cda5 -	chr2L	50022	intron	Cda5 -	chr2L	52601	intron	Cda5 -	chr2L_6_50001	chr2L_50001	RAL-307_125b
4	chr2L	47447	47485	chr2L	52570	52599	jockey	21	5149	18.0	15.0	16.5	1.2	5152	chr2L	47447	intron	Cda5 -	chr2L	50023	intron	Cda5 -	chr2L	52599	intron	Cda5 -	chr2L_21_50001	chr2L_50001	RAL-307_125b
9	chr2L	347841	347915	chr2L	355391	355453	blood	34	7548	14.0	9.0	11.5	2.7	7612	chr2L	347841	3` UTR	Plc21C +	chr2L	351647	intron	Plc21C +	chr2L	355453	3` UTR	Plc21C +	chr2L_34_350001	chr2L_350001	RAL-307_125b
14	chr2L	686912	686941	chr2L	695958	696031	roo	14	9082	5.5	7.0	6.2	1.9	9119	chr2L	686912	intron	ds -	chr2L	691472	intron	ds -	chr2L	696031	intron	ds -	chr2L_14_690001	chr2L_690001	RAL-307_125b
16	chr2L	770425	770481	chr2L	772251	772300	Bari1	17	1825	9.0	6.5	7.8	1.9	1875	chr2L	770425	intergenic	not near genes	chr2L	771362	intergenic	not near genes	chr2L	772300	intergenic	CR44614 +	chr2L_17_770001	chr2L_770001	RAL-307_125b
23	chr2L	976831	976911	chr2L	984517	984597	roo	26	7685	11.0	8.5	9.8	2.4	7766	chr2L	976831	intergenic	not near genes	chr2L	980714	intergenic	not near genes	chr2L	984597	intergenic	not near genes	chr2L_26_980001	chr2L_980001	RAL-307_125b
24	chr2L	996672	996720	chr2L	1005817	1005865	roo	11	9145	10.0	6.0	8.0	1.2	9193	chr2L	996672	intergenic	not near genes	chr2L	1001268	intergenic	not near genes	chr2L	1005865	intergenic	not near genes	chr2L_11_1000001	chr2L_1000001	RAL-307_125b
30	chr2L	1220092	1220099	chr2L	1227608	1227615	blood	7	7515	21.0	14.0	17.5	0.4	7523	chr2L	1220092	intron	CG42329 +	chr2L	1223854	intron	CG42329 +	chr2L	1227615	intron	CG42329 +	chr2L_7_1220001	chr2L_1220001	RAL-307_125b
31	chr2L	1220108	1220156	chr2L	1227599	1227657	blood	21	7509	10.5	10.0	10.2	1.9	7549	chr2L	1220108	intron	CG42329 +	chr2L	1223882	intron	CG42329 +	chr2L	1227657	intron	CG42329 +	chr2L_21_1220001	chr2L_1220001	RAL-307_125b
43	chr2L	1570650	1570704	chr2L	1573572	1573626	F-element	19	2922	12.0	6.5	9.2	1.9	2976	chr2L	1570650	intron	haf +	chr2L	1572138	intron	haf +	chr2L	1573626	intron	haf +	chr2L_19_1570001	chr2L_1570001	RAL-307_125b
46	chr2L	1678939	1678996	chr2L	1686454	1686478	blood	29	7513	12.5	12.0	12.2	2.2	7539	chr2L	1678939	intron	chinmo +	chr2L	1682708	intron	chinmo +	chr2L	1686478	intron	chinmo +	chr2L_29_1680001	chr2L_1680001	RAL-307_125b
48	chr2L	1711311	1711386	chr2L	1711685	1711685	mdg3	19	365	7.5	9.0	8.2	2.1	374	chr2L	1711311	3` UTR,3` UTR	mRpL48 +,frtz -	chr2L	1711498	3` UTR	frtz -	chr2L	1711685	3` UTR	frtz -	chr2L_19_1710001	chr2L_1710001	RAL-307_125b
70	chr2L	2100397	2100406	chr2L	2109545	2109554	roo	5	9158	10.5	12.0	11.2	0.4	9157	chr2L	2100397	intron	dpr3 -	chr2L	2104976	intron	dpr3 -	chr2L	2109554	intron	dpr3 -	chr2L_5_2100001	chr2L_2100001	RAL-307_125b
71	chr2L	2112118	2112134	chr2L	2119775	2119837	opus	9	7692	1.0	5.0	3.0	2.2	7719	chr2L	2112118	intergenic	not near genes	chr2L	2115978	intergenic	not near genes	chr2L	2119837	intergenic	not near genes	chr2L_9_2115001	chr2L_2115001	RAL-307_125b
79	chr2L	2294015	2294066	chr2L	2299246	2299288	copia	13	5237	7.5	6.5	7.0	1.6	5273	chr2L	2294015	intergenic	not near genes	chr2L	2296652	intergenic	not near genes	chr2L	2299288	intergenic	not near genes	chr2L_13_2295001	chr2L_2295001	RAL-307_125b
91	chr2L	2565504	2565560	chr2L	2571627	2571683	297	28	6120	7.5	9.0	8.2	3.0	6179	chr2L	2565504	exon	Cyp309a2 -	chr2L	2568594	intron	Cyp309a2 -	chr2L	2571683	exon	Cyp309a2 -	chr2L_28_2565001	chr2L_2565001	RAL-307_125b
94	chr2L	2661174	2661229	chr2L	2663045	2663086	I-element	16	1871	6.5	7.0	6.8	2.1	1912	chr2L	2661174	intergenic	not near genes	chr2L	2662130	intergenic	not near genes	chr2L	2663086	intergenic	not near genes	chr2L_16_2660001	chr2L_2660001	RAL-307_125b
99	chr2L	2772577	2772622	chr2L	2779206	2779218	297	26	6629	7.5	13.0	10.2	2.3	6641	chr2L	2772577	3` UTR	Syt1 -	chr2L	2775898	intron	Syt1 -	chr2L	2779218	3` UTR	Syt1 -	chr2L_26_2775001	chr2L_2775001	RAL-307_125b
110	chr2L	3072988	3073055	chr2L	3078241	3078303	copia	33	5252	7.5	5.0	6.2	4.6	5315	chr2L	3072988	intron	toc -	chr2L	3075646	intron	toc -	chr2L	3078303	intron	toc -	chr2L_33_3075001	chr2L_3075001	RAL-307_125b
122	chr2L	3202693	3202762	chr2L	3210172	3210241	mdg1	15	7479	12.0	0.0	6.0	2.1	7548	chr2L	3202693	intergenic	not near genes	chr2L	3206467	intergenic	not near genes	chr2L	3210241	intergenic	CR45336 +	chr2L_15_3205001	chr2L_3205001	RAL-307_125b
123	chr2L	3251465	3251522	chr2L	3259080	3259107	springer	18	7611	3.0	17.0	10.0	1.6	7642	chr2L	3251465	intergenic	not near genes	chr2L	3255286	intergenic	not near genes	chr2L	3259107	intergenic	not near genes	chr2L_18_3255001	chr2L_3255001	RAL-307_125b
128	chr2L	3388551	3388629	chr2L	3388841	3388890	pogo	30	288	7.5	10.0	8.8	3.1	339	chr2L	3388551	intergenic	CG42460 -	chr2L	3388720	intergenic	CG42460 -	chr2L	3388890	intergenic	CG42460 -,CR44791 +	chr2L_30_3385001	chr2L_3385001	RAL-307_125b
140	chr2L	3649744	3649812	chr2L	3654997	3655065	copia	29	5251	13.0	11.5	12.2	2.2	5321	chr2L	3649744	intron	for -	chr2L	3652404	intron	for -	chr2L	3655065	intron	for -	chr2L_29_3650001	chr2L_3650001	RAL-307_125b
157	chr2L	4066004	4066022	chr2L	4068879	4068897	Juan	9	2875	17.0	15.0	16.0	0.5	2893	chr2L	4066004	intron	ed +	chr2L	4067450	intron	ed +	chr2L	4068897	intron	ed +	chr2L_9_4065001	chr2L_4065001	RAL-307_125b
158	chr2L	4066026	4066050	chr2L	4068872	4068925	Juan	15	2865	10.0	12.0	11.0	1.2	2899	chr2L	4066026	intron	ed +	chr2L	4067476	intron	ed +	chr2L	4068925	intron	ed +	chr2L_15_4065001	chr2L_4065001	RAL-307_125b
162	chr2L	4181292	4181297	chr2L	4183974	4183979	Burdock	4	2682	8.0	21.5	14.8	0.3	2687	chr2L	4181292	intergenic	not near genes	chr2L	4182636	intergenic	not near genes	chr2L	4183979	intergenic	not near genes	chr2L_4_4180001	chr2L_4180001	RAL-307_125b
168	chr2L	4601661	4601734	chr2L	4609146	4609194	mdg1	28	7487	10.0	7.0	8.5	2.9	7533	chr2L	4601661	intron	dp -	chr2L	4605428	intron	dp -	chr2L	4609194	intron	dp -	chr2L_28_4605001	chr2L_4605001	RAL-307_125b
169	chr2L	4661796	4661821	chr2L	4669426	4669451	opus	6	7630	9.0	10.0	9.5	0.6	7655	chr2L	4661796	intergenic	not near genes	chr2L	4665624	intergenic	not near genes	chr2L	4669451	intergenic	not near genes	chr2L_6_4665001	chr2L_4665001	RAL-307_125b
170	chr2L	4661825	4661849	chr2L	4669423	4669478	opus	8	7621	5.0	9.5	7.2	1.0	7653	chr2L	4661825	intergenic	not near genes	chr2L	4665652	intergenic	not near genes	chr2L	4669478	intergenic	not near genes	chr2L_8_4665001	chr2L_4665001	RAL-307_125b
173	chr2L	4918130	4918204	chr2L	4923253	4923365	jockey	29	5152	8.0	0.0	4.0	5.8	5235	chr2L	4918130	intron	hoe1 -	chr2L	4920748	intron	hoe1 -	chr2L	4923365	intron	hoe1 -	chr2L_29_4920001	chr2L_4920001	RAL-307_125b
176	chr2L	4953466	4953511	chr2L	4953756	4953774	pogo	4	284	13.0	6.0	9.5	0.4	308	chr2L	4953466	intergenic	Jon25Bii -	chr2L	4953620	intergenic	Jon25Bii -	chr2L	4953774	intergenic	not near genes	chr2L_4_4950001	chr2L_4950001	RAL-307_125b
186	chr2L	5342728	5342788	chr2L	5345158	5345218	Doc	28	2430	14.0	13.5	13.8	1.9	2490	chr2L	5342728	intergenic	CG12512 -	chr2L	5343973	intergenic	not near genes	chr2L	5345218	intergenic	not near genes	chr2L_28_5340001	chr2L_5340001	RAL-307_125b
206	chr2L	5827669	5827741	chr2L	5836727	5836749	roo	25	9052	12.0	13.0	12.5	1.9	9080	chr2L	5827669	intron	TrissinR +	chr2L	5832209	intron	TrissinR +	chr2L	5836749	intron	TrissinR +	chr2L_25_5830001	chr2L_5830001	RAL-307_125b
229	chr2L	6363105	6363179	chr2L	6366077	6366146	Burdock	22	2966	6.5	5.0	5.8	3.2	3041	chr2L	6363105	intergenic	not near genes	chr2L	6364626	intergenic	not near genes	chr2L	6366146	intergenic	not near genes	chr2L_22_6360001	chr2L_6360001	RAL-307_125b
230	chr2L	6426811	6426878	chr2L	6445119	6445187	roo	32	18309	10.0	9.0	9.5	3.0	18376	chr2L	6426811	3` UTR	CG9527 -	chr2L	6435999	intron	CG9527 -	chr2L	6445187	exon	CG9527 -	chr2L_32_6435001	chr2L_6435001	RAL-307_125b
238	chr2L	6876759	6876810	chr2L	6882968	6883021	diver	17	6220	10.5	8.0	9.2	1.7	6262	chr2L	6876759	intron	Nlg2 +	chr2L	6879890	intron	Nlg2 +	chr2L	6883021	intron	Nlg2 +	chr2L_17_6875001	chr2L_6875001	RAL-307_125b
241	chr2L	6991366	6991429	chr2L	6998550	6998602	HMS-Beagle	7	7180	0.0	5.0	2.5	2.0	7236	chr2L	6991366	intron	uif -	chr2L	6994984	intron	uif -	chr2L	6998602	intron	uif -	chr2L_7_6990001	chr2L_6990001	RAL-307_125b
252	chr2L	7343283	7343358	chr2L	7350449	7350449	roo	13	7155	5.0	11.0	8.0	1.4	7166	chr2L	7343283	intron	Wnt6 +	chr2L	7346866	intron	Wnt6 +	chr2L	7350449	intron	Wnt6 +	chr2L_13_7345001	chr2L_7345001	RAL-307_125b
262	chr2L	7548072	7548103	chr2L	7550558	7550569	Burdock	5	2477	8.5	9.5	9.0	0.5	2497	chr2L	7548072	intron	RapGAP1 -	chr2L	7549320	intron	RapGAP1 -	chr2L	7550569	intron	RapGAP1 -	chr2L_5_7545001	chr2L_7545001	RAL-307_125b
264	chr2L	7579147	7579230	chr2L	7579387	7579460	BS	13	239	0.0	0.0	0.0	13.0	313	chr2L	7579147	intergenic	RapGAP1 -	chr2L	7579304	intergenic	RapGAP1 -	chr2L	7579460	intergenic	RapGAP1 -	chr2L_13_7575001	chr2L_7575001	RAL-307_125b
281	chr2L	7959027	7959072	chr2L	7960480	7960528	pogo	28	1456	6.5	11.5	9.0	2.8	1501	chr2L	7959027	intron	Snoo -	chr2L	7959778	intron	Snoo -	chr2L	7960528	intron	Snoo -	chr2L_28_7955001	chr2L_7955001	RAL-307_125b
282	chr2L	7977047	7977110	chr2L	7984073	7984136	297	11	7021	7.0	5.5	6.2	1.5	7089	chr2L	7977047	intron	Snoo -	chr2L	7980592	intron	Snoo -	chr2L	7984136	5` UTR,5` UTR	Snoo -,CG7231 +	chr2L_11_7980001	chr2L_7980001	RAL-307_125b
284	chr2L	8013574	8013584	chr2L	8018828	8018838	copia	4	5254	27.5	0.0	13.8	0.3	5264	chr2L	8013574	intron	Tg +	chr2L	8016206	intron	Tg +	chr2L	8018838	intron	Tg +	chr2L_4_8015001	chr2L_8015001	RAL-307_125b
285	chr2L	8013602	8013632	chr2L	8023588	8023617	copia	10	9984	14.5	7.0	10.8	0.8	10015	chr2L	8013602	intron	Tg +	chr2L	8018610	intron	Tg +	chr2L	8023617	intron	Tg +	chr2L_10_8015001	chr2L_8015001	RAL-307_125b
286	chr2L	8018820	8018837	chr2L	8023621	8023624	Doc	9	4818	0.0	16.0	8.0	1.0	4804	chr2L	8018820	intron	Tg +	chr2L	8021222	intron	Tg +	chr2L	8023624	intron	Tg +	chr2L_9_8020001	chr2L_8020001	RAL-307_125b
300	chr2L	8452377	8452446	chr2L	8461598	8461666	roo	39	9221	12.0	15.0	13.5	2.7	9289	chr2L	8452377	intron	fu12 -	chr2L	8457022	intron	fu12 -	chr2L	8461666	intron	fu12 -	chr2L_39_8455001	chr2L_8455001	RAL-307_125b
305	chr2L	8594428	8594488	chr2L	8601532	8601592	297	13	7104	5.5	8.5	7.0	1.6	7164	chr2L	8594428	intron,3` UTR	Sema-1a +,CR43855 -	chr2L	8598010	intron	Sema-1a +	chr2L	8601592	intron	Sema-1a +	chr2L_13_8595001	chr2L_8595001	RAL-307_125b
312	chr2L	8723070	8723139	chr2L	8731497	8731566	Tirant	31	8423	12.0	12.5	12.2	2.3	8496	chr2L	8723070	intron	raw -	chr2L	8727318	intron	raw -	chr2L	8731566	intron	raw -	chr2L_31_8725001	chr2L_8725001	RAL-307_125b
323	chr2L	9000237	9000308	chr2L	9007797	9007868	roo	21	7559	8.0	11.5	9.8	1.9	7631	chr2L	9000237	intergenic	Try29F +	chr2L	9004052	intergenic	not near genes	chr2L	9007868	intergenic	not near genes	chr2L_21_9000001	chr2L_9000001	RAL-307_125b
333	chr2L	9217945	9217955	chr2L	9222782	9222790	Doc	4	4836	16.0	0.5	8.2	0.4	4845	chr2L	9217945	intron	tai +	chr2L	9220368	intron	tai +	chr2L	9222790	intron	tai +	chr2L_4_9220001	chr2L_9220001	RAL-307_125b
334	chr2L	9217968	9217998	chr2L	9222780	9222843	Doc	12	4842	7.5	0.5	4.0	2.4	4875	chr2L	9217968	intron	tai +	chr2L	9220406	intron	tai +	chr2L	9222843	intron	tai +	chr2L_12_9220001	chr2L_9220001	RAL-307_125b
356	chr2L	9393449	9393527	chr2L	9396466	9396501	jockey	46	3013	9.0	12.0	10.5	4.0	3052	chr2L	9393449	intron	Shawl -	chr2L	9394975	intron	Shawl -	chr2L	9396501	intron	Shawl -	chr2L_46_9390001	chr2L_9390001	RAL-307_125b
371	chr2L	9973686	9973753	chr2L	9980850	9980922	HMS-Beagle	28	7167	10.5	8.5	9.5	2.7	7236	chr2L	9973686	intergenic	not near genes	chr2L	9977304	intergenic	not near genes	chr2L	9980922	intergenic	not near genes	chr2L_28_9975001	chr2L_9975001	RAL-307_125b
379	chr2L	10156280	10156301	chr2L	10163800	10163820	blood	6	7520	22.0	12.0	17.0	0.3	7540	chr2L	10156280	intron,3` UTR	CG44153 -,CG4839 +	chr2L	10160050	intron	CG44153 -	chr2L	10163820	intron	CG44153 -	chr2L_6_10160001	chr2L_10160001	RAL-307_125b
380	chr2L	10156304	10156346	chr2L	10163797	10163845	blood	18	7513	12.0	11.0	11.5	1.4	7541	chr2L	10156304	intron,3` UTR	CG44153 -,CG4839 +	chr2L	10160074	intron	CG44153 -	chr2L	10163845	intron	CG44153 -	chr2L_18_10160001	chr2L_10160001	RAL-307_125b
400	chr2L	10592818	10592834	chr2L	10600529	10600546	opus	9	7711	10.5	18.5	14.5	0.6	7728	chr2L	10592818	intron	Trim9 +	chr2L	10596682	intron	Trim9 +	chr2L	10600546	intron	Trim9 +	chr2L_9_10595001	chr2L_10595001	RAL-307_125b
401	chr2L	10592840	10592868	chr2L	10600527	10600580	opus	18	7709	6.5	18.5	12.5	1.3	7740	chr2L	10592840	intron	Trim9 +	chr2L	10596710	intron	Trim9 +	chr2L	10600580	intron	Trim9 +	chr2L_18_10595001	chr2L_10595001	RAL-307_125b
413	chr2L	10862833	10862864	chr2L	10864463	10864518	Rt1c	11	1646	8.0	5.5	6.8	1.4	1685	chr2L	10862833	3` UTR	CR43807 -	chr2L	10863676	intron	CR43807 -	chr2L	10864518	3` UTR	CR43807 -	chr2L_11_10860001	chr2L_10860001	RAL-307_125b
414	chr2L	10876526	10876555	chr2L	10883632	10883660	297	6	7102	6.5	12.0	9.2	0.6	7134	chr2L	10876526	intergenic	not near genes	chr2L	10880093	intergenic	not near genes	chr2L	10883660	intergenic	not near genes	chr2L_6_10880001	chr2L_10880001	RAL-307_125b
417	chr2L	10946915	10946971	chr2L	10956180	10956224	roo	21	9254	6.5	6.5	6.5	2.8	9309	chr2L	10946915	intron	dpr2 -	chr2L	10951570	intron	dpr2 -	chr2L	10956224	intron	dpr2 -	chr2L_21_10950001	chr2L_10950001	RAL-307_125b
422	chr2L	11315226	11315237	chr2L	11317680	11317691	G2	6	2454	16.0	13.5	14.8	0.4	2465	chr2L	11315226	intergenic	not near genes	chr2L	11316458	intergenic	not near genes	chr2L	11317691	intergenic	not near genes	chr2L_6_11315001	chr2L_11315001	RAL-307_125b
423	chr2L	11315243	11315267	chr2L	11317677	11317721	G2	10	2450	8.0	13.0	10.5	0.9	2478	chr2L	11315243	intergenic	not near genes	chr2L	11316482	intergenic	not near genes	chr2L	11317721	intergenic	not near genes	chr2L_10_11315001	chr2L_11315001	RAL-307_125b
438	chr2L	11540547	11540605	chr2L	11547999	11548057	Tabor	26	7452	9.0	10.0	9.5	2.5	7510	chr2L	11540547	intergenic	not near genes	chr2L	11544302	intergenic	not near genes	chr2L	11548057	intergenic	not near genes	chr2L_26_11540001	chr2L_11540001	RAL-307_125b
440	chr2L	11563597	11563649	chr2L	11568851	11568903	copia	17	5252	9.5	14.0	11.8	1.3	5306	chr2L	11563597	intergenic	not near genes	chr2L	11566250	intergenic	not near genes	chr2L	11568903	intergenic	not near genes	chr2L_17_11565001	chr2L_11565001	RAL-307_125b
442	chr2L	11614010	11614077	chr2L	11615555	11615620	hopper2	12	1532	3.0	6.5	4.8	2.1	1610	chr2L	11614010	intron	kek2 +	chr2L	11614815	intron	kek2 +	chr2L	11615620	intron	kek2 +	chr2L_12_11610001	chr2L_11610001	RAL-307_125b
443	chr2L	11614080	11614085	chr2L	11615552	11615592	hopper2	6	1518	2.0	6.5	4.2	1.2	1512	chr2L	11614080	intron	kek2 +	chr2L	11614836	intron	kek2 +	chr2L	11615592	intron	kek2 +	chr2L_6_11610001	chr2L_11610001	RAL-307_125b
448	chr2L	11713472	11713489	chr2L	11720989	11721007	blood	7	7516	20.5	9.5	15.0	0.4	7535	chr2L	11713472	intergenic	not near genes	chr2L	11717240	intergenic	not near genes	chr2L	11721007	intergenic	CR44143 +	chr2L_7_11715001	chr2L_11715001	RAL-307_125b
449	chr2L	11713491	11713532	chr2L	11720984	11721034	blood	20	7511	9.5	8.5	9.0	2.0	7543	chr2L	11713491	intergenic	not near genes	chr2L	11717262	intergenic	not near genes	chr2L	11721034	intergenic	CR44143 +	chr2L_20_11715001	chr2L_11715001	RAL-307_125b
455	chr2L	12067286	12067351	chr2L	12074388	12074453	297	31	7100	12.5	15.5	14.0	2.1	7167	chr2L	12067286	intergenic	not near genes	chr2L	12070870	intergenic	not near genes	chr2L	12074453	intergenic	not near genes	chr2L_31_12070001	chr2L_12070001	RAL-307_125b
476	chr2L	12558277	12558352	chr2L	12565451	12565495	HMS-Beagle	41	7174	5.0	8.5	6.8	5.3	7218	chr2L	12558277	intergenic	not near genes	chr2L	12561886	intergenic	not near genes	chr2L	12565495	intergenic	not near genes	chr2L_41_12560001	chr2L_12560001	RAL-307_125b
480	chr2L	12731013	12731078	chr2L	12735823	12735895	F-element	31	4815	12.0	10.5	11.2	2.5	4882	chr2L	12731013	intron	MRP +	chr2L	12733454	intron	MRP +	chr2L	12735895	intron	MRP +	chr2L_31_12730001	chr2L_12730001	RAL-307_125b
481	chr2L	12739130	12739196	chr2L	12743961	12744026	Doc	23	4829	9.0	10.5	9.8	2.1	4896	chr2L	12739130	exon	MRP +	chr2L	12741578	intron	MRP +	chr2L	12744026	exon	MRP +	chr2L_23_12740001	chr2L_12740001	RAL-307_125b
484	chr2L	12763784	12763869	chr2L	12764044	12764131	BS	21	261	0.0	0.5	0.2	17.5	347	chr2L	12763784	intergenic	not near genes	chr2L	12763958	intergenic	not near genes	chr2L	12764131	intergenic	not near genes	chr2L_21_12760001	chr2L_12760001	RAL-307_125b
486	chr2L	12781763	12781810	chr2L	12789256	12789303	Quasimodo	17	7492	9.0	13.5	11.2	1.4	7540	chr2L	12781763	intergenic	not near genes	chr2L	12785533	intergenic	not near genes	chr2L	12789303	intergenic	not near genes	chr2L_17_12785001	chr2L_12785001	RAL-307_125b
487	chr2L	12791575	12791584	chr2L	12795300	12795309	F-element	7	3725	21.5	15.0	18.2	0.4	3734	chr2L	12791575	intergenic	not near genes	chr2L	12793442	intergenic	not near genes	chr2L	12795309	intergenic	not near genes	chr2L_7_12790001	chr2L_12790001	RAL-307_125b
488	chr2L	12791587	12791625	chr2L	12795284	12795350	F-element	26	3718	11.5	10.5	11.0	2.2	3763	chr2L	12791587	intergenic	not near genes	chr2L	12793468	intergenic	not near genes	chr2L	12795350	intergenic	not near genes	chr2L_26_12790001	chr2L_12790001	RAL-307_125b
493	chr2L	12861658	12861690	chr2L	12863173	12863207	hobo	10	1513	9.5	7.0	8.2	1.1	1549	chr2L	12861658	intergenic	not near genes	chr2L	12862432	intergenic	not near genes	chr2L	12863207	intergenic	not near genes	chr2L_10_12860001	chr2L_12860001	RAL-307_125b
494	chr2L	12861691	12861713	chr2L	12863172	12863230	hobo	6	1499	8.0	7.0	7.5	0.7	1539	chr2L	12861691	intergenic	not near genes	chr2L	12862460	intergenic	not near genes	chr2L	12863230	intergenic	not near genes	chr2L_6_12860001	chr2L_12860001	RAL-307_125b
495	chr2L	12893983	12894045	chr2L	12895500	12895525	hobo	20	1506	10.5	10.0	10.2	1.8	1542	chr2L	12893983	intergenic	not near genes	chr2L	12894754	intergenic	not near genes	chr2L	12895525	intergenic	not near genes	chr2L_20_12890001	chr2L_12890001	RAL-307_125b
497	chr2L	12933806	12933877	chr2L	12941323	12941363	blood	37	7514	9.0	6.0	7.5	4.4	7557	chr2L	12933806	intergenic	not near genes	chr2L	12937584	intergenic	not near genes	chr2L	12941363	intergenic	not near genes	chr2L_37_12935001	chr2L_12935001	RAL-307_125b
500	chr2L	13036206	13036268	chr2L	13036498	13036560	X-element	30	292	12.0	16.0	14.0	2.0	354	chr2L	13036206	intron	CG9932 -	chr2L	13036383	intron	CG9932 -	chr2L	13036560	intron	CG9932 -	chr2L_30_13035001	chr2L_13035001	RAL-307_125b
505	chr2L	13241901	13241981	chr2L	13244342	13244346	BS	8	2428	8.0	5.0	6.5	1.1	2445	chr2L	13241901	5` UTR	CR45330 +	chr2L	13243124	intron	CR45330 +	chr2L	13244346	5` UTR	CR45330 +	chr2L_8_13240001	chr2L_13240001	RAL-307_125b
511	chr2L	13405602	13405680	chr2L	13410449	13410505	Doc	27	4840	5.0	7.0	6.0	3.9	4903	chr2L	13405602	exon	CG7110 +	chr2L	13408054	intron	CG7110 +	chr2L	13410505	intron	CG7110 +	chr2L_27_13405001	chr2L_13405001	RAL-307_125b
512	chr2L	13449411	13449492	chr2L	13456897	13456978	Quasimodo	19	7484	4.0	7.0	5.5	2.9	7567	chr2L	13449411	intron,intron	CG42784 +,Hsp60D -	chr2L	13453194	intron	CG42784 +	chr2L	13456978	intron	CG42784 +	chr2L_19_13450001	chr2L_13450001	RAL-307_125b
513	chr2L	13481434	13481464	chr2L	13482064	13482121	jockey	13	653	16.5	8.5	12.5	1.0	687	chr2L	13481434	intron	CG42784 +	chr2L	13481778	intron	CG42784 +	chr2L	13482121	intron	CG42784 +	chr2L_13_13480001	chr2L_13480001	RAL-307_125b
514	chr2L	13522241	13522291	chr2L	13527597	13527603	Transpac	16	5346	3.0	24.5	13.8	1.1	5362	chr2L	13522241	intron	B4 -	chr2L	13524922	intron	B4 -	chr2L	13527603	intron	B4 -	chr2L_16_13520001	chr2L_13520001	RAL-307_125b
516	chr2L	13560361	13560421	chr2L	13565232	13565292	F-element	32	4871	12.5	11.0	11.8	2.5	4931	chr2L	13560361	intron	kuz +	chr2L	13562826	intron	kuz +	chr2L	13565292	intron	kuz +	chr2L_32_13560001	chr2L_13560001	RAL-307_125b
528	chr2L	13761770	13761827	chr2L	13762931	13762988	Doc	31	1157	6.0	12.0	9.0	3.1	1218	chr2L	13761770	intron	TM9SF4 +	chr2L	13762379	intron	TM9SF4 +	chr2L	13762988	intron	TM9SF4 +	chr2L_31_13760001	chr2L_13760001	RAL-307_125b
532	chr2L	13853044	13853106	chr2L	13862244	13862306	roo	28	9196	11.5	14.5	13.0	2.0	9262	chr2L	13853044	intron	CenG1A +	chr2L	13857675	intron	CenG1A +	chr2L	13862306	intron	CenG1A +	chr2L_28_13855001	chr2L_13855001	RAL-307_125b
548	chr2L	14618868	14618889	chr2L	14619299	14619320	jockey	9	431	9.0	10.0	9.5	0.9	452	chr2L	14618868	intron,3` UTR,3` UTR	osp -,Adh +,Adhr +	chr2L	14619094	intron	osp -	chr2L	14619320	intron	osp -	chr2L_9_14615001	chr2L_14615001	RAL-307_125b
563	chr2L	14803839	14803909	chr2L	14809087	14809138	copia	31	5250	7.0	13.5	10.2	2.8	5299	chr2L	14803839	intergenic	not near genes	chr2L	14806488	intergenic	not near genes	chr2L	14809138	intergenic	not near genes	chr2L_31_14805001	chr2L_14805001	RAL-307_125b
566	chr2L	14889908	14889983	chr2L	14890383	14890423	jockey	21	470	7.0	2.0	4.5	3.8	515	chr2L	14889908	intergenic	not near genes	chr2L	14890166	intergenic	not near genes	chr2L	14890423	intergenic	not near genes	chr2L_21_14890001	chr2L_14890001	RAL-307_125b
570	chr2L	14984347	14984402	chr2L	14991990	14992054	opus	26	7648	10.5	13.0	11.8	2.0	7707	chr2L	14984347	intron	mol -	chr2L	14988200	intron	mol -	chr2L	14992054	intron	mol -	chr2L_26_14985001	chr2L_14985001	RAL-307_125b
589	chr2L	15446005	15446083	chr2L	15453524	15453542	blood	26	7516	7.5	1.5	4.5	4.7	7537	chr2L	15446005	intergenic	not near genes	chr2L	15449774	intergenic	not near genes	chr2L	15453542	intergenic	not near genes	chr2L_26_15445001	chr2L_15445001	RAL-307_125b
594	chr2L	15586370	15586409	chr2L	15593472	15593510	297	17	7102	14.0	11.0	12.5	1.3	7140	chr2L	15586370	intergenic	not near genes	chr2L	15589940	intergenic	not near genes	chr2L	15593510	intergenic	not near genes	chr2L_17_15585001	chr2L_15585001	RAL-307_125b
595	chr2L	15586410	15586429	chr2L	15593463	15593531	297	10	7097	12.0	9.5	10.8	0.8	7121	chr2L	15586410	intergenic	not near genes	chr2L	15589970	intergenic	not near genes	chr2L	15593531	intergenic	not near genes	chr2L_10_15585001	chr2L_15585001	RAL-307_125b
600	chr2L	15826846	15826892	chr2L	15829290	15829336	Tabor	25	2444	8.0	16.5	12.2	1.9	2490	chr2L	15826846	intergenic	not near genes	chr2L	15828091	intergenic	not near genes	chr2L	15829336	intergenic	not near genes	chr2L_25_15825001	chr2L_15825001	RAL-307_125b
604	chr2L	15955984	15956000	chr2L	15957501	15957517	hobo	10	1517	23.5	14.5	19.0	0.5	1533	chr2L	15955984	intron	beat-Ib -	chr2L	15956750	intron	beat-Ib -	chr2L	15957517	intron	beat-Ib -	chr2L_10_15955001	chr2L_15955001	RAL-307_125b
605	chr2L	15956001	15956056	chr2L	15957493	15957512	hobo	26	1510	10.5	14.0	12.2	2.0	1511	chr2L	15956001	intron	beat-Ib -	chr2L	15956756	intron	beat-Ib -	chr2L	15957512	intron	beat-Ib -	chr2L_26_15955001	chr2L_15955001	RAL-307_125b
609	chr2L	16071771	16071771	chr2L	16217660	16217660	copia	5	145889	21.0	34.0	27.5	0.2	145889	chr2L	16071771	intron	beat-Ia +	chr2L	16144716	intergenic	not near genes	chr2L	16217660	intergenic	not near genes	chr2L_5_16140001	chr2L_16140001	RAL-307_125b
610	chr2L	16120082	16120085	chr2L	16120224	16120227	INE-1	4	142	9.0	7.0	8.0	0.4	145	chr2L	16120082	intergenic	not near genes	chr2L	16120154	intergenic	not near genes	chr2L	16120227	intergenic	not near genes	chr2L_4_16120001	chr2L_16120001	RAL-307_125b
611	chr2L	16141121	16141185	chr2L	16146378	16146442	copia	24	5255	13.5	9.5	11.5	1.9	5321	chr2L	16141121	intergenic	not near genes	chr2L	16143782	intergenic	not near genes	chr2L	16146442	intergenic	not near genes	chr2L_24_16140001	chr2L_16140001	RAL-307_125b
612	chr2L	16153694	16153761	chr2L	16160812	16160879	297	26	7115	7.5	9.5	8.5	2.7	7185	chr2L	16153694	intergenic	not near genes	chr2L	16157286	intergenic	not near genes	chr2L	16160879	intergenic	not near genes	chr2L_26_16155001	chr2L_16155001	RAL-307_125b
613	chr2L	16071771	16071771	chr2L	16217660	16217660	copia	6	145889	21.0	34.0	27.5	0.2	145889	chr2L	16071771	intron	beat-Ia +	chr2L	16144716	intergenic	not near genes	chr2L	16217660	intergenic	not near genes	chr2L_6_16140001	chr2L_16140001	RAL-307_125b
621	chr2L	16280236	16280282	chr2L	16281432	16281492	1360	17	1204	13.0	12.5	12.8	1.2	1256	chr2L	16280236	intron	crp -	chr2L	16280864	intron	crp -	chr2L	16281492	intron	crp -	chr2L_17_16280001	chr2L_16280001	RAL-307_125b
631	chr2L	16511924	16511996	chr2L	16519088	16519173	HMS-Beagle	31	7176	13.0	3.0	8.0	3.4	7249	chr2L	16511924	intron	CG5953 -	chr2L	16515548	intron	CG5953 -	chr2L	16519173	intron	CG5953 -	chr2L_31_16515001	chr2L_16515001	RAL-307_125b
648	chr2L	16958063	16958125	chr2L	16962901	16962963	Doc	24	4838	5.0	9.0	7.0	3.0	4900	chr2L	16958063	intergenic	not near genes	chr2L	16960513	intergenic	not near genes	chr2L	16962963	intergenic	not near genes	chr2L_24_16960001	chr2L_16960001	RAL-307_125b
662	chr2L	17144284	17144309	chr2L	17152002	17152027	opus	5	7717	17.5	4.5	11.0	0.4	7743	chr2L	17144284	intron,intron	CG34106 +,beat-IIIa +	chr2L	17148156	intron,intron	CG34106 +,beat-IIIa +	chr2L	17152027	intron,intron	CG34106 +,beat-IIIa +	chr2L_5_17145001	chr2L_17145001	RAL-307_125b
663	chr2L	17167533	17167592	chr2L	17167824	17167883	pogo	27	290	6.0	7.0	6.5	3.6	350	chr2L	17167533	intron,intron	CG34106 +,beat-IIIa +	chr2L	17167708	intron,intron	CG34106 +,beat-IIIa +	chr2L	17167883	intron,intron	CG34106 +,beat-IIIa +	chr2L_27_17165001	chr2L_17165001	RAL-307_125b
666	chr2L	17199118	17199183	chr2L	17200635	17200700	hobo	16	1517	10.5	2.5	6.5	2.1	1582	chr2L	17199118	intron	beat-IIIc -	chr2L	17199909	intron	beat-IIIc -	chr2L	17200700	intron	beat-IIIc -	chr2L_16_17195001	chr2L_17195001	RAL-307_125b
673	chr2L	17273150	17273212	chr2L	17277983	17278045	F-element	24	4826	9.5	6.5	8.0	2.7	4895	chr2L	17273150	intergenic	not near genes	chr2L	17275598	intergenic	not near genes	chr2L	17278045	intergenic	not near genes	chr2L_24_17275001	chr2L_17275001	RAL-307_125b
674	chr2L	17273213	17273222	chr2L	17277979	17277993	F-element	5	4804	6.5	6.0	6.2	0.7	4780	chr2L	17273213	intergenic	not near genes	chr2L	17275603	intergenic	not near genes	chr2L	17277993	intergenic	not near genes	chr2L_5_17275001	chr2L_17275001	RAL-307_125b
681	chr2L	17431963	17432034	chr2L	17432124	17432192	1360	15	161	1.0	8.0	4.5	2.7	229	chr2L	17431963	intron	Dif -	chr2L	17432078	intron	Dif -	chr2L	17432192	intron	Dif -	chr2L_15_17430001	chr2L_17430001	RAL-307_125b
687	chr2L	17687472	17687523	chr2L	17692267	17692318	F-element	23	4793	10.5	7.0	8.8	2.3	4846	chr2L	17687472	intron	CadN -	chr2L	17689895	intron	CadN -	chr2L	17692318	intron	CadN -	chr2L_23_17685001	chr2L_17685001	RAL-307_125b
689	chr2L	17727819	17727880	chr2L	17729336	17729351	hobo	21	1508	10.0	14.5	12.2	1.6	1532	chr2L	17727819	intron	CadN -	chr2L	17728585	intron	CadN -	chr2L	17729351	intron	CadN -	chr2L_21_17725001	chr2L_17725001	RAL-307_125b
691	chr2L	17819878	17819940	chr2L	17825131	17825193	copia	23	5250	10.5	11.0	10.8	1.9	5315	chr2L	17819878	intron	CadN2 -	chr2L	17822536	intron	CadN2 -	chr2L	17825193	intron	CadN2 -	chr2L_23_17820001	chr2L_17820001	RAL-307_125b
696	chr2L	17911920	17911984	chr2L	17914148	17914212	pogo	18	2225	10.0	16.5	13.2	1.3	2292	chr2L	17911920	intergenic	not near genes	chr2L	17913066	intergenic	not near genes	chr2L	17914212	intergenic	CG43271 -	chr2L_18_17910001	chr2L_17910001	RAL-307_125b
699	chr2L	17951907	17951930	chr2L	17953424	17953447	hobo	14	1515	18.5	11.5	15.0	0.9	1540	chr2L	17951907	intergenic	CR44398 -,CR44397 -	chr2L	17952677	intergenic	not near genes	chr2L	17953447	intergenic	not near genes	chr2L_14_17950001	chr2L_17950001	RAL-307_125b
700	chr2L	17951932	17951975	chr2L	17953418	17953492	hobo	22	1514	9.5	11.0	10.2	2.0	1560	chr2L	17951932	intergenic	CR44398 -,CR44397 -	chr2L	17952712	intergenic	not near genes	chr2L	17953492	intergenic	not near genes	chr2L_22_17950001	chr2L_17950001	RAL-307_125b
701	chr2L	18051832	18051903	chr2L	18061029	18061079	roo	20	9192	12.5	11.0	11.8	1.6	9247	chr2L	18051832	intron	rdo +	chr2L	18056456	intron	rdo +	chr2L	18061079	intron	rdo +	chr2L_20_18055001	chr2L_18055001	RAL-307_125b
715	chr2L	18407989	18408043	chr2L	18412823	18412877	Doc	28	4831	19.0	14.0	16.5	1.6	4888	chr2L	18407989	intergenic	not near genes	chr2L	18410433	intergenic	not near genes	chr2L	18412877	intergenic	not near genes	chr2L_28_18410001	chr2L_18410001	RAL-307_125b
732	chr2L	19147256	19147384	chr2L	19154403	19154469	297	24	7138	0.0	11.5	5.8	3.5	7213	chr2L	19147256	intron	brat +	chr2L	19150862	intron	brat +	chr2L	19154469	intron	brat +	chr2L_24_19150001	chr2L_19150001	RAL-307_125b
738	chr2L	19344998	19345031	chr2L	19357236	19357274	blood	15	12253	15.0	13.5	14.2	1.0	12276	chr2L	19344998	intron	dnt -	chr2L	19351136	intron	dnt -	chr2L	19357274	intron	dnt -	chr2L_15_19350001	chr2L_19350001	RAL-307_125b
752	chr2L	19620053	19620120	chr2L	19621092	19621144	jockey	18	1032	9.5	5.0	7.2	2.2	1091	chr2L	19620053	intron	Lar +	chr2L	19620598	intron	Lar +	chr2L	19621144	intron	Lar +	chr2L_18_19620001	chr2L_19620001	RAL-307_125b
755	chr2L	19652519	19652599	chr2L	19674005	19674082	opus	36	21484	6.5	6.5	6.5	4.8	21563	chr2L	19652519	intron	Lar +	chr2L	19663300	intron	Lar +	chr2L	19674082	intron	Lar +	chr2L_36_19660001	chr2L_19660001	RAL-307_125b
756	chr2L	19703501	19703514	chr2L	19712687	19712700	roo	4	9186	28.0	14.5	21.2	0.2	9199	chr2L	19703501	intron	Lar +	chr2L	19708100	intron	Lar +	chr2L	19712700	intron	Lar +	chr2L_4_19705001	chr2L_19705001	RAL-307_125b
757	chr2L	19703517	19703560	chr2L	19712678	19712746	roo	26	9182	12.5	13.5	13.0	1.9	9229	chr2L	19703517	intron	Lar +	chr2L	19708132	intron	Lar +	chr2L	19712746	intron	Lar +	chr2L_26_19705001	chr2L_19705001	RAL-307_125b
759	chr2L	19762762	19762819	chr2L	19763054	19763111	pogo	21	291	8.5	9.5	9.0	2.1	349	chr2L	19762762	exon	fbp -	chr2L	19762936	intron	fbp -	chr2L	19763111	intron	fbp -	chr2L_21_19760001	chr2L_19760001	RAL-307_125b
767	chr2L	20005832	20005856	chr2L	20010958	20010982	flea	12	5125	24.0	16.5	20.2	0.6	5150	chr2L	20005832	intron	CG43861 -	chr2L	20008407	intron	CG43861 -	chr2L	20010982	intron	CG43861 -	chr2L_12_20005001	chr2L_20005001	RAL-307_125b
768	chr2L	20005859	20005894	chr2L	20010957	20011020	flea	15	5122	12.0	16.0	14.0	1.0	5161	chr2L	20005859	intron	CG43861 -	chr2L	20008440	intron	CG43861 -	chr2L	20011020	intron	CG43861 -	chr2L_15_20005001	chr2L_20005001	RAL-307_125b
777	chr2L	20272075	20272096	chr2L	20282836	20282857	copia	19	10761	18.5	10.5	14.5	1.2	10782	chr2L	20272075	intergenic	not near genes	chr2L	20277466	intergenic	not near genes	chr2L	20282857	intergenic	not near genes	chr2L_19_20275001	chr2L_20275001	RAL-307_125b
778	chr2L	20272099	20272135	chr2L	20282835	20282896	copia	21	10759	9.5	10.0	9.8	1.9	10797	chr2L	20272099	intergenic	not near genes	chr2L	20277498	intergenic	not near genes	chr2L	20282896	intergenic	not near genes	chr2L_21_20275001	chr2L_20275001	RAL-307_125b
780	chr2L	20303121	20303178	chr2L	20310639	20310696	blood	31	7518	10.0	11.0	10.5	2.7	7575	chr2L	20303121	intergenic	not near genes	chr2L	20306908	intergenic	not near genes	chr2L	20310696	intergenic	not near genes	chr2L_31_20305001	chr2L_20305001	RAL-307_125b
783	chr2L	20372168	20372224	chr2L	20372468	20372524	pogo	31	299	13.0	10.0	11.5	2.5	356	chr2L	20372168	intergenic	Ugt37a1 -	chr2L	20372346	intergenic	Ugt37a1 -	chr2L	20372524	exon	Ugt37a1 -	chr2L_31_20370001	chr2L_20370001	RAL-307_125b
791	chr2L	20568612	20568685	chr2L	20569052	20569125	X-element	23	438	10.5	4.5	7.5	2.7	513	chr2L	20568612	intron	CR45347 +	chr2L	20568868	intron	CR45347 +	chr2L	20569125	intron	CR45347 +	chr2L_23_20565001	chr2L_20565001	RAL-307_125b
794	chr2L	20576177	20576201	chr2L	20583695	20583719	blood	11	7516	16.0	7.0	11.5	0.9	7542	chr2L	20576177	intergenic	CR45347 +	chr2L	20579948	intergenic	not near genes	chr2L	20583719	3` UTR	CR44909 -	chr2L_11_20575001	chr2L_20575001	RAL-307_125b
795	chr2L	20576204	20576248	chr2L	20583692	20583761	blood	12	7514	5.0	7.0	6.0	1.7	7557	chr2L	20576204	intergenic	CR45347 +	chr2L	20579982	intergenic	not near genes	chr2L	20583761	3` UTR	CR44909 -	chr2L_12_20575001	chr2L_20575001	RAL-307_125b
806	chr2L	20835763	20835836	chr2L	20836529	20836598	Quasimodo	32	766	10.0	11.5	10.8	2.7	835	chr2L	20835763	5` UTR	Oseg5 -	chr2L	20836180	intergenic	Oseg5 -,Spn38F -	chr2L	20836598	intergenic	Spn38F -	chr2L_32_20835001	chr2L_20835001	RAL-307_125b
808	chr2L	20891484	20891543	chr2L	20896635	20896694	jockey	16	5149	11.0	13.5	12.2	1.2	5210	chr2L	20891484	intron,intron	CG43739 -,sky -	chr2L	20894089	intron,intron	CG43739 -,sky -	chr2L	20896694	intron,intron	CG43739 -,sky -	chr2L_16_20890001	chr2L_20890001	RAL-307_125b
809	chr2L	20901482	20901490	chr2L	20902698	20902703	1360	5	1214	0.0	6.5	3.2	1.2	1221	chr2L	20901482	intron,intron	CG43739 -,sky -	chr2L	20902092	intron,intron	CG43739 -,sky -	chr2L	20902703	intron,intron	CG43739 -,sky -	chr2L_5_20900001	chr2L_20900001	RAL-307_125b
814	chr2L	20976606	20976663	chr2L	20981471	20981528	X-element	31	4863	12.0	16.0	14.0	2.1	4922	chr2L	20976606	intron	CG42238 -	chr2L	20979067	intron	CG42238 -	chr2L	20981528	intron	CG42238 -	chr2L_31_20975001	chr2L_20975001	RAL-307_125b
816	chr2L	21020235	21020266	chr2L	21023962	21023973	NOF	8	3723	13.5	11.5	12.5	0.6	3738	chr2L	21020235	intron	CG42238 -	chr2L	21022104	intron	CG42238 -	chr2L	21023973	intron	CG42238 -	chr2L_8_21020001	chr2L_21020001	RAL-307_125b
817	chr2L	21020273	21020299	chr2L	21023955	21024026	NOF	4	3712	8.5	8.5	8.5	0.4	3753	chr2L	21020273	intron	CG42238 -	chr2L	21022150	intron	CG42238 -	chr2L	21024026	intron	CG42238 -	chr2L_4_21020001	chr2L_21020001	RAL-307_125b
819	chr2L	21041093	21041145	chr2L	21049404	21049456	Tirant	25	8308	15.0	10.5	12.8	1.8	8363	chr2L	21041093	intron	CG42238 -	chr2L	21045274	intron	CG42238 -	chr2L	21049456	intron	CG42238 -	chr2L_25_21045001	chr2L_21045001	RAL-307_125b
820	chr2L	21041146	21041166	chr2L	21049402	21049441	Tirant	15	8302	7.0	10.0	8.5	1.6	8295	chr2L	21041146	intron	CG42238 -	chr2L	21045294	intron	CG42238 -	chr2L	21049441	intron	CG42238 -	chr2L_15_21045001	chr2L_21045001	RAL-307_125b
827	chr2L	21347503	21347574	chr2L	21355025	21355058	blood	21	7519	11.5	3.0	7.2	2.6	7555	chr2L	21347503	intron	Tsp39D +	chr2L	21351280	intron	Tsp39D +	chr2L	21355058	intron	Tsp39D +	chr2L_21_21350001	chr2L_21350001	RAL-307_125b
828	chr2L	21596988	21597037	chr2L	21604780	21604820	roo	18	7791	14.0	13.5	13.8	1.2	7832	chr2L	21596988	intergenic	not near genes	chr2L	21600904	intergenic	not near genes	chr2L	21604820	intergenic	not near genes	chr2L_18_21600001	chr2L_21600001	RAL-307_125b
829	chr2L	21691792	21691825	chr2L	21698305	21698346	Burdock	12	6520	16.0	1.0	8.5	1.3	6554	chr2L	21691792	intron	CG31619 +	chr2L	21695069	intron	CG31619 +	chr2L	21698346	intron	CG31619 +	chr2L_12_21695001	chr2L_21695001	RAL-307_125b
843	chr2L	21981641	21981707	chr2L	21990856	21990903	roo	29	9213	14.5	14.0	14.2	1.9	9262	chr2L	21981641	exon	CG2528 -	chr2L	21986272	intron	CG2528 -	chr2L	21990903	exon	CG2528 -	chr2L_29_21985001	chr2L_21985001	RAL-307_125b
846	chr2L	22082202	22082211	chr2L	22082343	22082352	INE-1	8	141	13.0	24.0	18.5	0.4	150	chr2L	22082202	intergenic	not near genes	chr2L	22082277	intergenic	not near genes	chr2L	22082352	intergenic	not near genes	chr2L_8_22080001	chr2L_22080001	RAL-307_125b
851	chr2L	22258574	22258641	chr2L	22260748	22260815	G6	29	2174	8.5	12.0	10.2	2.6	2241	chr2L	22258574	intergenic	Tif-IA +	chr2L	22259694	intergenic	not near genes	chr2L	22260815	intergenic	not near genes	chr2L_29_22255001	chr2L_22255001	RAL-307_125b
854	chr2L	22548886	22548931	chr2L	22550134	22550171	1360	8	1259	0.0	11.5	5.8	1.2	1285	chr2L	22548886	intergenic	CG17490 +	chr2L	22549528	intergenic	not near genes	chr2L	22550171	intergenic	CG17493 +	chr2L_8_22545001	chr2L_22545001	RAL-307_125b
855	chr2L	22581932	22581995	chr2L	22583771	22583834	S-element	35	1838	9.0	11.0	10.0	3.2	1902	chr2L	22581932	intron	CG17494 +	chr2L	22582883	intron	CG17494 +	chr2L	22583834	intron	CG17494 +	chr2L_35_22580001	chr2L_22580001	RAL-307_125b
858	chr2L	22776379	22776446	chr2L	22778218	22778285	S-element	32	1838	10.0	11.0	10.5	2.8	1906	chr2L	22776379	intergenic	not near genes	chr2L	22777332	intergenic	not near genes	chr2L	22778285	intergenic	not near genes	chr2L_32_22775001	chr2L_22775001	RAL-307_125b
861	chr2R	469926	469952	chr2R	473215	473243	F-element	7	3289	6.5	11.5	9.0	0.7	3317	chr2R	469926	intergenic	not near genes	chr2R	471584	intergenic	not near genes	chr2R	473243	intergenic	not near genes	chr2R_7_470001	chr2R_470001	RAL-307_125b
862	chr2R	552745	552779	chr2R	553977	553999	1360	4	1238	6.0	6.5	6.2	0.6	1254	chr2R	552745	intron	CG40378 +	chr2R	553372	intron	CG40378 +	chr2R	553999	intron	CG40378 +	chr2R_4_550001	chr2R_550001	RAL-307_125b
866	chr2R	1516564	1516603	chr2R	1521342	1521381	1731	40	4777	37.0	28.5	32.8	1.2	4817	chr2R	1516564	exon	Maf1 -	chr2R	1518972	intron	Maf1 -	chr2R	1521381	5` UTR	Maf1 -	chr2R_40_1515001	chr2R_1515001	RAL-307_125b
869	chr2R	2110466	2110501	chr2R	2118074	2118109	17.6	8	7605	11.0	7.5	9.2	0.8	7643	chr2R	2110466	intron	CG17684 -	chr2R	2114288	intron	CG17684 -	chr2R	2118109	intron	CG17684 -	chr2R_8_2110001	chr2R_2110001	RAL-307_125b
870	chr2R	2498943	2499007	chr2R	2508138	2508177	roo	39	9195	13.0	11.5	12.2	3.0	9234	chr2R	2498943	intron	MFS17 -	chr2R	2503560	intron	MFS17 -	chr2R	2508177	intron	MFS17 -	chr2R_39_2500001	chr2R_2500001	RAL-307_125b
872	chr2R	1373053	1373072	chr2R	2589301	2589320	Cr1a	6	1216248	45.5	35.0	40.2	0.1	1216267	chr2R	1373053	intron	l(2)41Ab +	chr2R	1981186	intron	CG17684 -	chr2R	2589320	intergenic	not near genes	chr2R_6_1980001	chr2R_1980001	RAL-307_125b
873	chr2R	2591485	2591505	chr2R	2594211	2594231	roo	9	2726	54.5	32.0	43.2	0.2	2746	chr2R	2591485	intergenic	not near genes	chr2R	2592858	intergenic	not near genes	chr2R	2594231	intergenic	not near genes	chr2R_9_2590001	chr2R_2590001	RAL-307_125b
874	chr2R	2875339	2875392	chr2R	2878899	2878957	HMS-Beagle	19	3563	46.5	8.0	27.2	0.7	3618	chr2R	2875339	intergenic	not near genes	chr2R	2877148	intergenic	not near genes	chr2R	2878957	intergenic	not near genes	chr2R_19_2875001	chr2R_2875001	RAL-307_125b
876	chr2R	3144039	3144049	chr2R	3393366	3393377	Doc	7	249327	33.5	17.0	25.2	0.3	249338	chr2R	3144039	intron	CG42596 +	chr2R	3268708	intergenic	not near genes	chr2R	3393377	intergenic	not near genes	chr2R_7_3265001	chr2R_3265001	RAL-307_125b
877	chr2R	3144051	3144103	chr2R	3393364	3393431	Doc	11	249319	31.5	16.5	24.0	0.4	249380	chr2R	3144051	intron	CG42596 +	chr2R	3268741	intergenic	not near genes	chr2R	3393431	intergenic	not near genes	chr2R_11_3265001	chr2R_3265001	RAL-307_125b
881	chr2R	3532587	3532620	chr2R	3536068	3536113	Doc	10	3491	8.5	8.0	8.2	1.1	3526	chr2R	3532587	intergenic	not near genes	chr2R	3534350	intergenic	not near genes	chr2R	3536113	intergenic	not near genes	chr2R_10_3530001	chr2R_3530001	RAL-307_125b
886	chr2R	4622917	4622973	chr2R	4624118	4624175	1360	30	1205	10.0	8.0	9.0	3.0	1258	chr2R	4622917	intergenic	CR44101 -	chr2R	4623546	intergenic	not near genes	chr2R	4624175	intergenic	not near genes	chr2R_30_4620001	chr2R_4620001	RAL-307_125b
887	chr2R	4622976	4622978	chr2R	4624109	4624187	1360	4	1190	8.5	5.0	6.8	0.5	1211	chr2R	4622976	intergenic	CR44101 -	chr2R	4623582	intergenic	not near genes	chr2R	4624187	intergenic	not near genes	chr2R_4_4620001	chr2R_4620001	RAL-307_125b
888	chr2R	4624605	4624663	chr2R	4626555	4626595	Bica	28	1953	10.0	15.0	12.5	2.1	1990	chr2R	4624605	intergenic	not near genes	chr2R	4625600	intergenic	not near genes	chr2R	4626595	intergenic	not near genes	chr2R_28_4625001	chr2R_4625001	RAL-307_125b
895	chr2R	4838835	4838900	chr2R	4840402	4840463	transib2	26	1571	15.0	19.5	17.2	1.4	1628	chr2R	4838835	intergenic	not near genes	chr2R	4839649	intergenic	not near genes	chr2R	4840463	intergenic	not near genes	chr2R_26_4835001	chr2R_4835001	RAL-307_125b
896	chr2R	4870695	4870739	chr2R	4871256	4871300	R1A1-element	8	557	17.0	10.5	13.8	0.5	605	chr2R	4870695	intergenic	not near genes	chr2R	4870998	intergenic	not near genes	chr2R	4871300	intergenic	not near genes	chr2R_8_4870001	chr2R_4870001	RAL-307_125b
903	chr2R	5417951	5417957	chr2R	5420633	5420638	Burdock	4	2682	30.5	12.5	21.5	0.2	2687	chr2R	5417951	intron	laccase2 +	chr2R	5419294	intron	laccase2 +	chr2R	5420638	intron	laccase2 +	chr2R_4_5415001	chr2R_5415001	RAL-307_125b
904	chr2R	5417959	5418012	chr2R	5420626	5420679	Burdock	34	2680	14.5	11.0	12.8	2.5	2720	chr2R	5417959	intron	laccase2 +	chr2R	5419319	intron	laccase2 +	chr2R	5420679	intron	laccase2 +	chr2R_34_5415001	chr2R_5415001	RAL-307_125b
911	chr2R	5543199	5543215	chr2R	5547317	5547349	invader1	7	4132	0.0	21.5	10.8	0.6	4150	chr2R	5543199	intron	CG30438 +	chr2R	5545274	intron	CG30438 +	chr2R	5547349	intron	CG30438 +	chr2R_7_5545001	chr2R_5545001	RAL-307_125b
919	chr2R	5869234	5869302	chr2R	5874360	5874428	flea	36	5122	9.5	9.5	9.5	3.4	5194	chr2R	5869234	intergenic	not near genes	chr2R	5871831	intergenic	not near genes	chr2R	5874428	intergenic	not near genes	chr2R_36_5870001	chr2R_5870001	RAL-307_125b
922	chr2R	5902106	5902186	chr2R	5909715	5909795	17.6	21	7605	6.5	7.0	6.8	2.7	7689	chr2R	5902106	5` UTR	CG43366 +	chr2R	5905950	intron	CG43366 +	chr2R	5909795	intron	CG43366 +	chr2R_21_5905001	chr2R_5905001	RAL-307_125b
925	chr2R	5939625	5939670	chr2R	5940871	5940912	INE-1	25	1244	10.0	23.0	16.5	1.4	1287	chr2R	5939625	intergenic	not near genes	chr2R	5940268	intergenic	not near genes	chr2R	5940912	intergenic	not near genes	chr2R_25_5940001	chr2R_5940001	RAL-307_125b
930	chr2R	6096678	6096705	chr2R	6101926	6101953	BS	6	5246	14.5	8.0	11.2	0.5	5275	chr2R	6096678	intron	EcR -	chr2R	6099316	intron	EcR -	chr2R	6101953	intron	EcR -	chr2R_6_6095001	chr2R_6095001	RAL-307_125b
931	chr2R	6096710	6096750	chr2R	6101914	6101972	BS	14	5227	6.0	6.5	6.2	1.9	5262	chr2R	6096710	intron	EcR -	chr2R	6099341	intron	EcR -	chr2R	6101972	intron	EcR -	chr2R_14_6095001	chr2R_6095001	RAL-307_125b
937	chr2R	6494489	6494547	chr2R	6499300	6499359	F-element	14	4812	5.5	3.5	4.5	2.5	4870	chr2R	6494489	intergenic	not near genes	chr2R	6496924	intergenic	not near genes	chr2R	6499359	intergenic	not near genes	chr2R_14_6495001	chr2R_6495001	RAL-307_125b
940	chr2R	6579758	6579805	chr2R	6584895	6584942	flea	19	5136	8.0	8.0	8.0	2.1	5184	chr2R	6579758	intron	jing +	chr2R	6582350	intron	jing +	chr2R	6584942	intron	jing +	chr2R_19_6580001	chr2R_6580001	RAL-307_125b
944	chr2R	6952130	6952185	chr2R	6959761	6959815	opus	19	7628	13.0	11.0	12.0	1.5	7685	chr2R	6952130	intron,intron,exon	mim -,CheB42c -,ppk25 +	chr2R	6955972	intron,intron	mim -,CheB42c -	chr2R	6959815	intron,intron	mim -,CheB42c -	chr2R_19_6955001	chr2R_6955001	RAL-307_125b
947	chr2R	7139944	7139947	chr2R	7141451	7141468	hopper2	4	1518	0.0	13.0	6.5	0.5	1524	chr2R	7139944	intergenic	not near genes	chr2R	7140706	intergenic	not near genes	chr2R	7141468	intergenic	not near genes	chr2R_4_7140001	chr2R_7140001	RAL-307_125b
949	chr2R	7196531	7196546	chr2R	7201356	7201371	F-element	13	4824	15.0	9.5	12.2	1.0	4840	chr2R	7196531	intron	pk +	chr2R	7198951	intron	pk +	chr2R	7201371	intron	pk +	chr2R_13_7195001	chr2R_7195001	RAL-307_125b
950	chr2R	7196547	7196598	chr2R	7201344	7201430	F-element	17	4825	5.5	5.0	5.2	2.7	4883	chr2R	7196547	intron	pk +	chr2R	7198988	intron	pk +	chr2R	7201430	intron	pk +	chr2R_17_7195001	chr2R_7195001	RAL-307_125b
951	chr2R	7209846	7209867	chr2R	7217636	7217665	roo	11	7795	16.0	23.5	19.8	0.5	7819	chr2R	7209846	intron	pk +	chr2R	7213756	intron	pk +	chr2R	7217665	intron	pk +	chr2R_11_7210001	chr2R_7210001	RAL-307_125b
952	chr2R	7235780	7235816	chr2R	7240922	7240958	jockey	10	5141	19.5	2.0	10.8	0.8	5178	chr2R	7235780	intergenic	not near genes	chr2R	7238369	intergenic	not near genes	chr2R	7240958	intergenic	not near genes	chr2R_10_7235001	chr2R_7235001	RAL-307_125b
953	chr2R	7235817	7235840	chr2R	7240917	7240921	jockey	10	5122	13.0	2.0	7.5	1.2	5104	chr2R	7235817	intergenic	not near genes	chr2R	7238369	intergenic	not near genes	chr2R	7240921	intergenic	not near genes	chr2R_10_7235001	chr2R_7235001	RAL-307_125b
958	chr2R	7434848	7434909	chr2R	7439199	7439260	Juan	15	4351	13.0	13.5	13.2	1.1	4412	chr2R	7434848	3` UTR	so +	chr2R	7437054	intergenic	not near genes	chr2R	7439260	intergenic	not near genes	chr2R_15_7435001	chr2R_7435001	RAL-307_125b
959	chr2R	7608370	7608427	chr2R	7613623	7613662	I-element	30	5249	11.0	9.0	10.0	2.7	5292	chr2R	7608370	intron	CG1358 -	chr2R	7611016	intron	CG1358 -	chr2R	7613662	intron	CG1358 -	chr2R_30_7610001	chr2R_7610001	RAL-307_125b
965	chr2R	7815630	7815693	chr2R	7822149	7822212	Burdock	27	6519	5.5	12.0	8.8	2.8	6582	chr2R	7815630	intergenic	CG1882 +	chr2R	7818921	intergenic	not near genes	chr2R	7822212	3` UTR	cathD -	chr2R_27_7815001	chr2R_7815001	RAL-307_125b
966	chr2R	7862185	7862247	chr2R	7867347	7867408	flea	13	5156	8.5	5.0	6.8	1.7	5223	chr2R	7862185	intron	Dgk -	chr2R	7864796	intron	Dgk -	chr2R	7867408	intron	Dgk -	chr2R_13_7860001	chr2R_7860001	RAL-307_125b
967	chr2R	7869150	7869169	chr2R	7873986	7874005	Doc	10	4835	28.0	12.5	20.2	0.5	4855	chr2R	7869150	intron	Dgk -	chr2R	7871578	intron	Dgk -	chr2R	7874005	intron	Dgk -	chr2R_10_7870001	chr2R_7870001	RAL-307_125b
968	chr2R	7869170	7869216	chr2R	7873981	7874002	Doc	21	4827	13.0	12.0	12.5	1.6	4832	chr2R	7869170	intron	Dgk -	chr2R	7871586	intron	Dgk -	chr2R	7874002	intron	Dgk -	chr2R_21_7870001	chr2R_7870001	RAL-307_125b
983	chr2R	8160886	8160943	chr2R	8161024	8161083	1360	21	134	8.5	10.0	9.2	2.1	197	chr2R	8160886	exon	CG8708 -	chr2R	8160984	intron	CG8708 -	chr2R	8161083	intron	CG8708 -	chr2R_21_8160001	chr2R_8160001	RAL-307_125b
990	chr2R	8330821	8330886	chr2R	8331357	8331422	roo	26	533	9.0	12.5	10.8	2.2	601	chr2R	8330821	intron	pdm3 +	chr2R	8331122	intron	pdm3 +	chr2R	8331422	intron	pdm3 +	chr2R_26_8330001	chr2R_8330001	RAL-307_125b
991	chr2R	8398193	8398233	chr2R	8403004	8403039	Doc	21	4824	6.0	10.0	8.0	2.3	4846	chr2R	8398193	intron	CG2121 -	chr2R	8400616	intron	CG2121 -	chr2R	8403039	intron	CG2121 -	chr2R_21_8400001	chr2R_8400001	RAL-307_125b
992	chr2R	8416268	8416288	chr2R	8417142	8417155	I-element	7	873	15.5	13.0	14.2	0.5	887	chr2R	8416268	intergenic	not near genes	chr2R	8416712	intergenic	CG43296 -	chr2R	8417155	intergenic	CG43296 -	chr2R_7_8415001	chr2R_8415001	RAL-307_125b
997	chr2R	8722719	8722790	chr2R	8723010	8723036	pogo	31	278	12.0	5.0	8.5	3.3	317	chr2R	8722719	intron	CG14767 -	chr2R	8722878	intron	CG14767 -	chr2R	8723036	intron	CG14767 -	chr2R_31_8720001	chr2R_8720001	RAL-307_125b
998	chr2R	8777875	8777945	chr2R	8784129	8784174	diver	23	6252	8.0	10.5	9.2	2.3	6299	chr2R	8777875	intergenic	not near genes	chr2R	8781024	intergenic	not near genes	chr2R	8784174	intergenic	not near genes	chr2R_23_8780001	chr2R_8780001	RAL-307_125b
1012	chr2R	9151259	9151267	chr2R	9157779	9157787	Burdock	5	6520	29.0	10.5	19.8	0.2	6528	chr2R	9151259	exon	CG30345 +	chr2R	9154523	intergenic	not near genes	chr2R	9157787	intergenic	CG8008 -	chr2R_5_9150001	chr2R_9150001	RAL-307_125b
1013	chr2R	9151269	9151331	chr2R	9157774	9157851	Burdock	25	6518	11.0	10.0	10.5	2.2	6582	chr2R	9151269	exon	CG30345 +	chr2R	9154560	intergenic	not near genes	chr2R	9157851	intergenic	CG8008 -	chr2R_25_9150001	chr2R_9150001	RAL-307_125b
1014	chr2R	9212653	9212711	chr2R	9213189	9213206	roo	10	528	8.0	6.5	7.2	1.2	553	chr2R	9212653	intergenic	CR45309 +	chr2R	9212930	intergenic	CR45309 +	chr2R	9213206	5` UTR	CR45309 +	chr2R_10_9210001	chr2R_9210001	RAL-307_125b
1019	chr2R	9352253	9352256	chr2R	9361444	9361456	roo	4	9196	10.0	12.0	11.0	0.3	9203	chr2R	9352253	intron	CG13954 -	chr2R	9356854	intron	CG13954 -	chr2R	9361456	intron	CG13954 -	chr2R_4_9355001	chr2R_9355001	RAL-307_125b
1021	chr2R	9480031	9480082	chr2R	9490612	9490653	roo	15	10580	12.5	10.5	11.5	1.2	10622	chr2R	9480031	intergenic	not near genes	chr2R	9485342	intergenic	not near genes	chr2R	9490653	intergenic	not near genes	chr2R_15_9485001	chr2R_9485001	RAL-307_125b
1028	chr2R	9726568	9726635	chr2R	9734171	9734238	17.6	23	7601	9.0	12.0	10.5	2.0	7670	chr2R	9726568	intron	sqa -	chr2R	9730403	intron	sqa -	chr2R	9734238	intron	sqa -	chr2R_23_9730001	chr2R_9730001	RAL-307_125b
1032	chr2R	9871048	9871054	chr2R	9871569	9871574	roo	4	527	3.0	19.0	11.0	0.3	526	chr2R	9871048	intron	cbx -	chr2R	9871311	intron	cbx -	chr2R	9871574	intron,5` UTR	cbx -,CG18446 +	chr2R_4_9870001	chr2R_9870001	RAL-307_125b
1033	chr2R	9871056	9871062	chr2R	9871562	9871598	roo	6	525	0.5	17.5	9.0	0.6	542	chr2R	9871056	intron	cbx -	chr2R	9871327	intron	cbx -	chr2R	9871598	intron,5` UTR	cbx -,CG18446 +	chr2R_6_9870001	chr2R_9870001	RAL-307_125b
1034	chr2R	9871063	9871071	chr2R	9871542	9871607	roo	5	515	0.0	14.5	7.2	0.6	544	chr2R	9871063	intron	cbx -	chr2R	9871335	intron	cbx -	chr2R	9871607	intron,5` UTR	cbx -,CG18446 +	chr2R_5_9870001	chr2R_9870001	RAL-307_125b
1038	chr2R	9945397	9945405	chr2R	9945643	9945651	BS	5	246	28.5	10.5	19.5	0.2	254	chr2R	9945397	intron	Mef2 -	chr2R	9945524	intron	Mef2 -	chr2R	9945651	intron	Mef2 -	chr2R_5_9945001	chr2R_9945001	RAL-307_125b
1039	chr2R	9945406	9945430	chr2R	9945639	9945676	BS	9	243	24.0	10.5	17.2	0.5	270	chr2R	9945406	intron	Mef2 -	chr2R	9945541	intron	Mef2 -	chr2R	9945676	intron	Mef2 -	chr2R_9_9945001	chr2R_9945001	RAL-307_125b
1040	chr2R	9945432	9945463	chr2R	9945635	9945709	BS	16	238	13.0	9.5	11.2	1.3	277	chr2R	9945432	intron	Mef2 -	chr2R	9945570	intron	Mef2 -	chr2R	9945709	intron	Mef2 -	chr2R_16_9945001	chr2R_9945001	RAL-307_125b
1041	chr2R	10005804	10005837	chr2R	10007018	10007052	1360	14	1208	15.5	7.0	11.2	1.1	1248	chr2R	10005804	intron	Pka-R2 -	chr2R	10006428	intron	Pka-R2 -	chr2R	10007052	intron	Pka-R2 -	chr2R_14_10005001	chr2R_10005001	RAL-307_125b
1042	chr2R	10005839	10005873	chr2R	10007014	10007062	1360	9	1192	8.0	6.5	7.2	1.1	1223	chr2R	10005839	intron	Pka-R2 -	chr2R	10006450	intron	Pka-R2 -	chr2R	10007062	intron	Pka-R2 -	chr2R_9_10005001	chr2R_10005001	RAL-307_125b
1048	chr2R	10176836	10176911	chr2R	10186053	10186128	roo	33	9216	10.0	10.5	10.2	2.9	9292	chr2R	10176836	intron	KCNQ -	chr2R	10181482	intron	KCNQ -	chr2R	10186128	intron	KCNQ -	chr2R_33_10180001	chr2R_10180001	RAL-307_125b
1075	chr2R	10622310	10622355	chr2R	10637124	10637144	mdg1	7	14810	16.5	6.5	11.5	0.6	14834	chr2R	10622310	intron	CG11883 +	chr2R	10629727	intron	CG11883 +	chr2R	10637144	intron	CG11883 +	chr2R_7_10625001	chr2R_10625001	RAL-307_125b
1078	chr2R	10659004	10659050	chr2R	10666669	10666715	mdg1	15	7665	0.0	8.5	4.2	2.9	7711	chr2R	10659004	intergenic	not near genes	chr2R	10662860	intergenic	not near genes	chr2R	10666715	intergenic	not near genes	chr2R_15_10660001	chr2R_10660001	RAL-307_125b
1095	chr2R	10948012	10948060	chr2R	10955600	10955616	17.6	21	7594	0.5	9.5	5.0	3.5	7604	chr2R	10948012	intergenic	not near genes	chr2R	10951814	intergenic	not near genes	chr2R	10955616	intergenic	not near genes	chr2R_21_10950001	chr2R_10950001	RAL-307_125b
1099	chr2R	10979623	10979677	chr2R	10980142	10980199	297	7	521	6.0	8.5	7.2	0.9	576	chr2R	10979623	intergenic	not near genes	chr2R	10979911	intergenic	not near genes	chr2R	10980199	intergenic	not near genes	chr2R_7_10975001	chr2R_10975001	RAL-307_125b
1100	chr2R	11009779	11009842	chr2R	11019003	11019066	roo	34	9217	14.5	13.5	14.0	2.3	9287	chr2R	11009779	intron	luna -	chr2R	11014422	intron	luna -	chr2R	11019066	intron	luna -	chr2R_34_11010001	chr2R_11010001	RAL-307_125b
1101	chr2R	11019838	11019897	chr2R	11024954	11025003	jockey	20	5109	5.0	5.0	5.0	3.3	5165	chr2R	11019838	intron	luna -	chr2R	11022420	intron	luna -	chr2R	11025003	intron	luna -	chr2R_20_11020001	chr2R_11020001	RAL-307_125b
1106	chr2R	11134085	11134138	chr2R	11134376	11134429	pogo	29	291	12.5	14.5	13.5	2.0	344	chr2R	11134085	intergenic	not near genes	chr2R	11134257	intergenic	not near genes	chr2R	11134429	intergenic	not near genes	chr2R_29_11130001	chr2R_11130001	RAL-307_125b
1110	chr2R	11207783	11207807	chr2R	11208026	11208050	BS	16	241	18.0	21.5	19.8	0.8	267	chr2R	11207783	intron	shn +	chr2R	11207916	intron	shn +	chr2R	11208050	intron	shn +	chr2R_16_11205001	chr2R_11205001	RAL-307_125b
1111	chr2R	11207811	11207843	chr2R	11208009	11208045	BS	20	234	11.0	16.0	13.5	1.4	234	chr2R	11207811	intron	shn +	chr2R	11207928	intron	shn +	chr2R	11208045	intron	shn +	chr2R_20_11205001	chr2R_11205001	RAL-307_125b
1112	chr2R	11297591	11297636	chr2R	11301962	11302006	flea	25	4370	11.0	8.5	9.8	2.3	4415	chr2R	11297591	intergenic	CG42336 -	chr2R	11299798	intergenic	not near genes	chr2R	11302006	5` UTR	CG7741 +	chr2R_25_11295001	chr2R_11295001	RAL-307_125b
1118	chr2R	11415495	11415551	chr2R	11418674	11418710	opus	25	3192	0.0	11.5	5.8	3.7	3215	chr2R	11415495	intron	Drip -	chr2R	11417102	intron	Drip -	chr2R	11418710	intron	Drip -	chr2R_25_11415001	chr2R_11415001	RAL-307_125b
1121	chr2R	11472603	11472678	chr2R	11473850	11473925	pogo	38	1244	7.5	13.5	10.5	3.3	1322	chr2R	11472603	intergenic	not near genes	chr2R	11473264	intergenic	not near genes	chr2R	11473925	intergenic	not near genes	chr2R_38_11470001	chr2R_11470001	RAL-307_125b
1156	chr2R	12481146	12481168	chr2R	12482958	12482978	roo	6	1830	4.0	10.0	7.0	0.8	1832	chr2R	12481146	exon	Dh44-R2 +	chr2R	12482062	intron	Dh44-R2 +	chr2R	12482978	intron	Dh44-R2 +	chr2R_6_12480001	chr2R_12480001	RAL-307_125b
1157	chr2R	12501649	12501664	chr2R	12503859	12503869	Rt1c	4	2209	15.5	9.5	12.5	0.3	2220	chr2R	12501649	intron	fdl -	chr2R	12502759	intron	fdl -	chr2R	12503869	intron	fdl -	chr2R_4_12500001	chr2R_12500001	RAL-307_125b
1158	chr2R	12501667	12501723	chr2R	12503858	12503895	Rt1c	10	2197	4.5	9.0	6.8	1.3	2228	chr2R	12501667	intron	fdl -	chr2R	12502781	intron	fdl -	chr2R	12503895	intron	fdl -	chr2R_10_12500001	chr2R_12500001	RAL-307_125b
1163	chr2R	12707472	12707547	chr2R	12715888	12715963	roo	35	8415	7.0	3.5	5.2	5.6	8491	chr2R	12707472	intron	CG42663 +	chr2R	12711718	intron	CG42663 +	chr2R	12715963	intron	CG42663 +	chr2R_35_12710001	chr2R_12710001	RAL-307_125b
1165	chr2R	12789251	12789265	chr2R	12797664	12797669	roo	5	8411	19.5	5.0	12.2	0.4	8418	chr2R	12789251	intron,3` UTR	sca +,CR45137 -	chr2R	12793460	intron,intron	sca +,CR45137 -	chr2R	12797669	intron,3` UTR	sca +,CR45137 -	chr2R_5_12790001	chr2R_12790001	RAL-307_125b
1166	chr2R	12789270	12789327	chr2R	12797656	12797699	roo	18	8391	7.0	4.5	5.8	2.6	8429	chr2R	12789270	intron,3` UTR	sca +,CR45137 -	chr2R	12793484	intron,intron	sca +,CR45137 -	chr2R	12797699	intron,3` UTR	sca +,CR45137 -	chr2R_18_12790001	chr2R_12790001	RAL-307_125b
1167	chr2R	12819409	12819475	chr2R	12824521	12824594	jockey	21	5111	5.5	2.5	4.0	4.2	5185	chr2R	12819409	intergenic	not near genes	chr2R	12822002	intergenic	not near genes	chr2R	12824594	intergenic	not near genes	chr2R_21_12820001	chr2R_12820001	RAL-307_125b
1170	chr2R	12856963	12856979	chr2R	12868317	12868333	accord	10	11357	28.0	16.0	22.0	0.4	11370	chr2R	12856963	intron	CG17574 -	chr2R	12862648	intron	CG17574 -	chr2R	12868333	intron,intron	CG17574 -,CR45140 +	chr2R_10_12860001	chr2R_12860001	RAL-307_125b
1182	chr2R	13136795	13136860	chr2R	13141643	13141708	Doc	22	4839	5.0	6.0	5.5	3.4	4913	chr2R	13136795	exon	Cap-G +	chr2R	13139252	intron	Cap-G +	chr2R	13141708	intron	Cap-G +	chr2R_22_13135001	chr2R_13135001	RAL-307_125b
1201	chr2R	13580501	13580522	chr2R	13580856	13580921	jockey	11	392	0.0	2.5	1.2	5.0	420	chr2R	13580501	3` UTR	CG6191 -	chr2R	13580711	3` UTR,3` UTR	CG6191 -,CG45088 -	chr2R	13580921	3` UTR,3` UTR	CG6191 -,CG45088 -	chr2R_11_13580001	chr2R_13580001	RAL-307_125b
1210	chr2R	13728086	13728155	chr2R	13735793	13735862	opus	26	7707	13.0	8.5	10.8	2.2	7776	chr2R	13728086	intron	fas +	chr2R	13731974	intron	fas +	chr2R	13735862	intron	fas +	chr2R_26_13730001	chr2R_13730001	RAL-307_125b
1217	chr2R	13905576	13905614	chr2R	13907608	13907614	Rt1a	4	2024	0.5	9.5	5.0	0.7	2038	chr2R	13905576	intron	shot -	chr2R	13906595	intron	shot -	chr2R	13907614	intron	shot -	chr2R_4_13905001	chr2R_13905001	RAL-307_125b
1236	chr2R	14394195	14394236	chr2R	14399034	14399035	Doc	5	4831	16.0	12.5	14.2	0.3	4840	chr2R	14394195	intergenic	not near genes	chr2R	14396615	intergenic	not near genes	chr2R	14399035	intergenic	not near genes	chr2R_5_14395001	chr2R_14395001	RAL-307_125b
1237	chr2R	14467269	14467302	chr2R	14476477	14476478	roo	7	9203	9.5	10.0	9.8	0.6	9209	chr2R	14467269	intergenic	not near genes	chr2R	14471874	intergenic	not near genes	chr2R	14476478	5` UTR	CR44462 +	chr2R_7_14470001	chr2R_14470001	RAL-307_125b
1238	chr2R	14467305	14467325	chr2R	14476467	14476480	roo	13	9191	6.5	8.5	7.5	1.5	9175	chr2R	14467305	intergenic	not near genes	chr2R	14471892	intergenic	not near genes	chr2R	14476480	5` UTR	CR44462 +	chr2R_13_14470001	chr2R_14470001	RAL-307_125b
1239	chr2R	14497337	14497386	chr2R	14498550	14498593	1360	19	1212	4.0	7.5	5.8	2.8	1256	chr2R	14497337	intergenic	Cpsf160 -,L +	chr2R	14497965	intron	Cpsf160 -	chr2R	14498593	3` UTR	Cpsf160 -	chr2R_19_14495001	chr2R_14495001	RAL-307_125b
1258	chr2R	14889169	14889241	chr2R	14897827	14897891	Max-element	27	8653	11.5	0.5	6.0	3.9	8722	chr2R	14889169	intergenic	Cyp6a8 -	chr2R	14893530	intergenic	not near genes	chr2R	14897891	intergenic	not near genes	chr2R_27_14890001	chr2R_14890001	RAL-307_125b
1268	chr2R	15004678	15004755	chr2R	15005058	15005069	jockey	35	377	8.5	7.0	7.8	4.0	391	chr2R	15004678	intergenic	not near genes	chr2R	15004874	intergenic	not near genes	chr2R	15005069	intergenic	not near genes	chr2R_35_15000001	chr2R_15000001	RAL-307_125b
1269	chr2R	15015423	15015483	chr2R	15022895	15022957	mdg1	24	7469	7.5	9.0	8.2	2.6	7534	chr2R	15015423	intron	hbs +	chr2R	15019190	intron	hbs +	chr2R	15022957	intron	hbs +	chr2R_24_15015001	chr2R_15015001	RAL-307_125b
1271	chr2R	15119275	15119344	chr2R	15127802	15127868	Tirant	25	8520	9.0	5.5	7.2	3.0	8593	chr2R	15119275	intron	chn +	chr2R	15123572	intron	chn +	chr2R	15127868	intron	chn +	chr2R_25_15120001	chr2R_15120001	RAL-307_125b
1276	chr2R	15340641	15340660	chr2R	15349276	15349295	Tirant	13	8634	24.0	9.5	16.8	0.7	8654	chr2R	15340641	intron	unc-5 +	chr2R	15344968	intron	unc-5 +	chr2R	15349295	intron	unc-5 +	chr2R_13_15340001	chr2R_15340001	RAL-307_125b
1294	chr2R	16061705	16061714	chr2R	16064388	16064397	Burdock	8	2683	2.0	12.0	7.0	1.0	2692	chr2R	16061705	intergenic	not near genes	chr2R	16063051	intergenic	not near genes	chr2R	16064397	intergenic	not near genes	chr2R_8_16060001	chr2R_16060001	RAL-307_125b
1301	chr2R	16539590	16539661	chr2R	16544846	16544949	copia	9	5260	1.5	0.0	0.8	5.0	5359	chr2R	16539590	intergenic	not near genes	chr2R	16542270	intergenic	not near genes	chr2R	16544949	intergenic	not near genes	chr2R_9_16540001	chr2R_16540001	RAL-307_125b
1317	chr2R	17147208	17147258	chr2R	17152289	17152339	jockey	27	5080	12.5	14.5	13.5	1.9	5131	chr2R	17147208	intergenic	not near genes	chr2R	17149774	intergenic	not near genes	chr2R	17152339	intergenic	not near genes	chr2R_27_17145001	chr2R_17145001	RAL-307_125b
1319	chr2R	17176358	17176373	chr2R	17182592	17182613	diver	6	6236	0.5	10.0	5.2	1.0	6255	chr2R	17176358	intergenic	not near genes	chr2R	17179486	intergenic	not near genes	chr2R	17182613	intergenic	not near genes	chr2R_6_17175001	chr2R_17175001	RAL-307_125b
1321	chr2R	17236471	17236530	chr2R	17241719	17241774	copia	18	5248	6.0	5.0	5.5	2.8	5303	chr2R	17236471	intron	mbl +	chr2R	17239122	intron	mbl +	chr2R	17241774	intron	mbl +	chr2R_18_17235001	chr2R_17235001	RAL-307_125b
1329	chr2R	17485871	17485879	chr2R	17490691	17490699	F-element	5	4820	29.5	11.5	20.5	0.2	4828	chr2R	17485871	5` UTR,intron	CG43110 -,NT5E-2 +	chr2R	17488285	intron	NT5E-2 +	chr2R	17490699	intron	NT5E-2 +	chr2R_5_17485001	chr2R_17485001	RAL-307_125b
1330	chr2R	17485880	17485950	chr2R	17490690	17490768	F-element	21	4818	9.0	11.5	10.2	1.9	4888	chr2R	17485880	5` UTR,intron	CG43110 -,NT5E-2 +	chr2R	17488324	intron	NT5E-2 +	chr2R	17490768	intron	NT5E-2 +	chr2R_21_17485001	chr2R_17485001	RAL-307_125b
1337	chr2R	17782316	17782387	chr2R	17783569	17783640	pogo	18	1253	9.5	8.0	8.8	1.8	1324	chr2R	17782316	intergenic	CG33981 -,fab1 -	chr2R	17782978	intergenic	not near genes	chr2R	17783640	intergenic	mir-31a -	chr2R_18_17780001	chr2R_17780001	RAL-307_125b
1338	chr2R	17783994	17784052	chr2R	17784269	17784343	pogo	16	284	8.0	5.0	6.5	2.1	349	chr2R	17783994	intergenic	mir-31a -	chr2R	17784168	intergenic	mir-31a -	chr2R	17784343	intergenic	mir-31a -	chr2R_16_17780001	chr2R_17780001	RAL-307_125b
1352	chr2R	18045628	18045691	chr2R	18046030	18046083	jockey	31	402	14.5	10.5	12.5	2.3	455	chr2R	18045628	intergenic	not near genes	chr2R	18045856	intergenic	not near genes	chr2R	18046083	intergenic	CG5767 -	chr2R_31_18045001	chr2R_18045001	RAL-307_125b
1355	chr2R	18111646	18111704	chr2R	18115564	18115622	F-element	29	3916	11.5	10.0	10.8	2.5	3976	chr2R	18111646	intergenic	not near genes	chr2R	18113634	intergenic	not near genes	chr2R	18115622	intergenic	not near genes	chr2R_29_18110001	chr2R_18110001	RAL-307_125b
1362	chr2R	18358349	18358410	chr2R	18372611	18372672	roo	14	14256	12.5	0.0	6.2	1.9	14323	chr2R	18358349	intergenic	not near genes	chr2R	18365510	intergenic	not near genes	chr2R	18372672	intergenic	not near genes	chr2R_14_18365001	chr2R_18365001	RAL-307_125b
1373	chr2R	18487791	18487809	chr2R	18495292	18495310	blood	13	7500	13.5	9.0	11.2	1.1	7519	chr2R	18487791	intron	CG30116 -	chr2R	18491550	intron	CG30116 -	chr2R	18495310	intron	CG30116 -	chr2R_13_18490001	chr2R_18490001	RAL-307_125b
1374	chr2R	18487815	18487827	chr2R	18495289	18495328	blood	5	7492	9.5	9.0	9.2	0.5	7513	chr2R	18487815	intron	CG30116 -	chr2R	18491572	intron	CG30116 -	chr2R	18495328	intron	CG30116 -	chr2R_5_18490001	chr2R_18490001	RAL-307_125b
1377	chr2R	18575747	18575830	chr2R	18581985	18582042	3S18	31	6225	3.0	6.0	4.5	5.6	6295	chr2R	18575747	intron	GEFmeso -	chr2R	18578894	intron	GEFmeso -	chr2R	18582042	intron	GEFmeso -	chr2R_31_18575001	chr2R_18575001	RAL-307_125b
1379	chr2R	18590827	18590894	chr2R	18600024	18600075	roo	25	9194	7.5	5.5	6.5	3.3	9248	chr2R	18590827	intron	GEFmeso -	chr2R	18595451	intron	GEFmeso -	chr2R	18600075	intron	GEFmeso -	chr2R_25_18595001	chr2R_18595001	RAL-307_125b
1408	chr2R	19715821	19715857	chr2R	19723327	19723376	blood	17	7516	12.0	8.5	10.2	1.5	7555	chr2R	19715821	intergenic	not near genes	chr2R	19719598	intergenic	not near genes	chr2R	19723376	intergenic	not near genes	chr2R_17_19715001	chr2R_19715001	RAL-307_125b
1410	chr2R	19776565	19776621	chr2R	19779938	19779981	jockey	19	3372	9.0	19.5	14.2	1.2	3416	chr2R	19776565	intergenic	not near genes	chr2R	19778273	intergenic	not near genes	chr2R	19779981	intergenic	not near genes	chr2R_19_19775001	chr2R_19775001	RAL-307_125b
1413	chr2R	19914806	19914819	chr2R	19922268	19922280	mdg1	6	7462	14.0	8.5	11.2	0.5	7474	chr2R	19914806	intergenic	not near genes	chr2R	19918543	intergenic	not near genes	chr2R	19922280	intergenic	not near genes	chr2R_6_19915001	chr2R_19915001	RAL-307_125b
1414	chr2R	19914823	19914857	chr2R	19922263	19922314	mdg1	9	7457	10.0	8.0	9.0	0.9	7491	chr2R	19914823	intergenic	not near genes	chr2R	19918568	intergenic	not near genes	chr2R	19922314	intergenic	not near genes	chr2R_9_19915001	chr2R_19915001	RAL-307_125b
1415	chr2R	19957404	19957461	chr2R	19962636	19962697	copia	15	5234	4.0	5.5	4.8	2.6	5293	chr2R	19957404	intergenic	CG44623 +	chr2R	19960050	intergenic	not near genes	chr2R	19962697	intergenic	not near genes	chr2R_15_19960001	chr2R_19960001	RAL-307_125b
1418	chr2R	20069192	20069253	chr2R	20071875	20071941	opus	24	2682	0.0	2.5	1.2	10.9	2749	chr2R	20069192	intergenic	not near genes	chr2R	20070566	intergenic	not near genes	chr2R	20071941	intergenic	not near genes	chr2R_24_20070001	chr2R_20070001	RAL-307_125b
1425	chr2R	20368469	20368495	chr2R	20377682	20377708	roo	12	9213	20.0	13.0	16.5	0.7	9239	chr2R	20368469	intergenic	not near genes	chr2R	20373088	intergenic	not near genes	chr2R	20377708	intergenic	not near genes	chr2R_12_20370001	chr2R_20370001	RAL-307_125b
1443	chr2R	20739407	20739469	chr2R	20744225	20744287	F-element	15	4810	5.5	6.0	5.8	2.2	4880	chr2R	20739407	intron	dpr +	chr2R	20741847	intron	dpr +	chr2R	20744287	intron	dpr +	chr2R_15_20740001	chr2R_20740001	RAL-307_125b
1445	chr2R	20783261	20783323	chr2R	20788083	20788144	F-element	32	4819	13.5	9.5	11.5	2.6	4883	chr2R	20783261	intergenic	not near genes	chr2R	20785702	intergenic	not near genes	chr2R	20788144	intergenic	CG43666 -	chr2R_32_20785001	chr2R_20785001	RAL-307_125b
1457	chr2R	21151100	21151144	chr2R	21153762	21153827	opus	21	2675	0.5	6.5	3.5	4.7	2727	chr2R	21151100	intron	CG30389 -	chr2R	21152464	intron	CG30389 -	chr2R	21153827	intron	CG30389 -	chr2R_21_21150001	chr2R_21150001	RAL-307_125b
1480	chr2R	21738255	21738311	chr2R	21747437	21747491	roo	13	9179	2.0	2.5	2.2	4.1	9236	chr2R	21738255	intergenic	not near genes	chr2R	21742873	intergenic	not near genes	chr2R	21747491	intergenic	not near genes	chr2R_13_21740001	chr2R_21740001	RAL-307_125b
1481	chr2R	21753046	21753110	chr2R	21753581	21753645	roo	36	533	7.5	18.0	12.8	2.6	599	chr2R	21753046	intergenic	not near genes	chr2R	21753346	intergenic	not near genes	chr2R	21753645	intergenic	not near genes	chr2R_36_21750001	chr2R_21750001	RAL-307_125b
1485	chr2R	21809481	21809545	chr2R	21817771	21817809	roo	33	8289	10.0	14.0	12.0	2.5	8328	chr2R	21809481	intergenic	not near genes	chr2R	21813645	intergenic	not near genes	chr2R	21817809	intergenic	not near genes	chr2R_33_21810001	chr2R_21810001	RAL-307_125b
1504	chr2R	22349653	22349693	chr2R	22351487	22351527	jockey	12	1828	10.0	13.5	11.8	0.9	1874	chr2R	22349653	intron	Liprin-gamma -	chr2R	22350590	intron	Liprin-gamma -	chr2R	22351527	intron	Liprin-gamma -	chr2R_12_22350001	chr2R_22350001	RAL-307_125b
1505	chr2R	22349696	22349705	chr2R	22351479	22351514	jockey	7	1809	8.0	11.0	9.5	0.7	1818	chr2R	22349696	intron	Liprin-gamma -	chr2R	22350605	intron	Liprin-gamma -	chr2R	22351514	intron	Liprin-gamma -	chr2R_7_22350001	chr2R_22350001	RAL-307_125b
1507	chr2R	22360341	22360352	chr2R	22360824	22360828	jockey	4	481	12.5	7.5	10.0	0.4	487	chr2R	22360341	intron	Liprin-gamma -	chr2R	22360584	intron	Liprin-gamma -	chr2R	22360828	intron	Liprin-gamma -	chr2R_4_22360001	chr2R_22360001	RAL-307_125b
1513	chr2R	22525707	22525775	chr2R	22529311	22529332	jockey	32	3600	7.5	8.0	7.8	3.6	3625	chr2R	22525707	intron	px -	chr2R	22527520	intron	px -	chr2R	22529332	intron	px -	chr2R_32_22525001	chr2R_22525001	RAL-307_125b
1514	chr2R	22580403	22580443	chr2R	22586603	22586638	diver	23	6198	14.0	7.0	10.5	2.0	6235	chr2R	22580403	intron	dnr1 -	chr2R	22583520	intron	dnr1 -	chr2R	22586638	intron	dnr1 -	chr2R_23_22580001	chr2R_22580001	RAL-307_125b
1516	chr2R	22774925	22774941	chr2R	22775393	22775410	jockey	8	469	27.0	10.5	18.8	0.4	485	chr2R	22774925	intron	CG42260 -	chr2R	22775168	intron	CG42260 -	chr2R	22775410	intron	CG42260 -	chr2R_8_22775001	chr2R_22775001	RAL-307_125b
1517	chr2R	22774945	22774990	chr2R	22775390	22775442	jockey	20	466	13.5	10.5	12.0	1.5	497	chr2R	22774945	intron	CG42260 -	chr2R	22775194	intron	CG42260 -	chr2R	22775442	intron	CG42260 -	chr2R_20_22775001	chr2R_22775001	RAL-307_125b
1521	chr2R	22843003	22843045	chr2R	22845019	22845061	flea	23	2016	13.5	13.5	13.5	1.6	2058	chr2R	22843003	intergenic	CG9826 +	chr2R	22844032	intergenic	not near genes	chr2R	22845061	intergenic	not near genes	chr2R_23_22840001	chr2R_22840001	RAL-307_125b
1525	chr2R	22958776	22958805	chr2R	22963908	22963938	flea	6	5131	4.5	9.5	7.0	0.8	5162	chr2R	22958776	intergenic	not near genes	chr2R	22961357	intergenic	not near genes	chr2R	22963938	intergenic	not near genes	chr2R_6_22960001	chr2R_22960001	RAL-307_125b
1543	chr2R	23402587	23402637	chr2R	23407684	23407763	flea	21	5098	0.0	11.0	5.5	3.2	5176	chr2R	23402587	intergenic	CG3520 -	chr2R	23405175	intergenic	not near genes	chr2R	23407763	intergenic	not near genes	chr2R_21_23405001	chr2R_23405001	RAL-307_125b
1545	chr2R	23529546	23529604	chr2R	23537151	23537210	412	11	7611	3.5	5.5	4.5	2.0	7664	chr2R	23529546	intron	bw -	chr2R	23533378	intron	bw -	chr2R	23537210	exon	bw -	chr2R_11_23530001	chr2R_23530001	RAL-307_125b
1555	chr2R	23914259	23914320	chr2R	23921928	23921973	412	23	7668	12.5	6.0	9.2	2.3	7714	chr2R	23914259	exon	kcc +	chr2R	23918116	intron	kcc +	chr2R	23921973	exon	kcc +	chr2R_23_23915001	chr2R_23915001	RAL-307_125b
1558	chr2R	24147022	24147086	chr2R	24154650	24154666	412	18	7615	4.5	8.0	6.2	2.5	7644	chr2R	24147022	intron	Dat +	chr2R	24150844	intron	Dat +	chr2R	24154666	intron	Dat +	chr2R_18_24150001	chr2R_24150001	RAL-307_125b
1559	chr2R	24147089	24147097	chr2R	24154645	24154704	412	6	7607	2.0	8.0	5.0	1.0	7615	chr2R	24147089	intron	Dat +	chr2R	24150896	intron	Dat +	chr2R	24154704	intron	Dat +	chr2R_6_24150001	chr2R_24150001	RAL-307_125b
1560	chr2R	24177191	24177258	chr2R	24184726	24184792	412	34	7533	21.0	9.5	15.2	2.1	7601	chr2R	24177191	3` UTR	Nop60B +	chr2R	24180992	intron	Nop60B +	chr2R	24184792	3` UTR	Nop60B +	chr2R_34_24180001	chr2R_24180001	RAL-307_125b
1568	chr2R	24353396	24353438	chr2R	24361792	24361805	roo	9	8399	18.0	11.0	14.5	0.6	8409	chr2R	24353396	intron,intron	bs +,CR44811 -	chr2R	24357600	intron,intron	bs +,CR44811 -	chr2R	24361805	intron,intron	bs +,CR44811 -	chr2R_9_24355001	chr2R_24355001	RAL-307_125b
1574	chr2R	24647553	24647614	chr2R	24655160	24655220	412	18	7605	7.0	10.0	8.5	1.9	7667	chr2R	24647553	intergenic	not near genes	chr2R	24651386	intergenic	not near genes	chr2R	24655220	intergenic	not near genes	chr2R_18_24650001	chr2R_24650001	RAL-307_125b
1577	chr2R	24727863	24727872	chr2R	24735401	24735430	mdg1	4	7552	13.0	12.0	12.5	0.3	7567	chr2R	24727863	intron	Mid1 -	chr2R	24731646	intron	Mid1 -	chr2R	24735430	intron	Mid1 -	chr2R_4_24730001	chr2R_24730001	RAL-307_125b
1578	chr2R	24727882	24727914	chr2R	24735400	24735405	mdg1	20	7531	6.0	12.0	9.0	2.0	7523	chr2R	24727882	intron	Mid1 -	chr2R	24731644	intron	Mid1 -	chr2R	24735405	intron	Mid1 -	chr2R_20_24730001	chr2R_24730001	RAL-307_125b
1579	chr2R	24763594	24763641	chr2R	24765589	24765661	G2	18	2005	3.0	8.0	5.5	2.8	2067	chr2R	24763594	exon	CG3894 +	chr2R	24764628	intron	CG3894 +	chr2R	24765661	exon	CG3894 +	chr2R_18_24760001	chr2R_24760001	RAL-307_125b
1596	chr2R	25141605	25141677	chr2R	25159345	25159417	roo	35	17739	9.5	14.5	12.0	2.7	17812	chr2R	25141605	intergenic	not near genes	chr2R	25150511	intergenic	not near genes	chr2R	25159417	intergenic	not near genes	chr2R_35_25150001	chr2R_25150001	RAL-307_125b
1605	chr3L	110170	110238	chr3L	119387	119455	roo	39	9215	8.0	12.5	10.2	3.5	9285	chr3L	110170	intergenic	not near genes	chr3L	114812	intergenic	not near genes	chr3L	119455	intergenic	not near genes	chr3L_39_110001	chr3L_110001	RAL-307_125b
1608	chr3L	402657	402715	chr3L	409748	409805	297	18	7099	5.0	9.0	7.0	2.2	7148	chr3L	402657	intergenic	not near genes	chr3L	406231	intergenic	not near genes	chr3L	409805	intergenic	not near genes	chr3L_18_405001	chr3L_405001	RAL-307_125b
1622	chr3L	789862	789943	chr3L	790397	790478	roo	34	534	8.5	6.0	7.2	4.1	616	chr3L	789862	intergenic	not near genes	chr3L	790170	intergenic	not near genes	chr3L	790478	intergenic	not near genes	chr3L_34_790001	chr3L_790001	RAL-307_125b
1624	chr3L	857973	857999	chr3L	866487	866518	Tirant	11	8516	13.0	11.0	12.0	0.8	8545	chr3L	857973	intergenic	not near genes	chr3L	862246	intergenic	not near genes	chr3L	866518	5` UTR	CG12502 +	chr3L_11_860001	chr3L_860001	RAL-307_125b
1629	chr3L	925141	925198	chr3L	932611	932674	mdg1	26	7472	10.0	10.5	10.2	2.3	7533	chr3L	925141	intron	Glut1 +	chr3L	928908	intron	Glut1 +	chr3L	932674	intron	Glut1 +	chr3L_26_925001	chr3L_925001	RAL-307_125b
1631	chr3L	939738	939790	chr3L	940909	940946	jockey	26	1170	8.5	15.5	12.0	2.0	1208	chr3L	939738	intron	Glut1 +	chr3L	940342	intron	Glut1 +	chr3L	940946	intron	Glut1 +	chr3L_26_940001	chr3L_940001	RAL-307_125b
1642	chr3L	1047313	1047325	chr3L	1055170	1055187	412	4	7858	13.0	7.5	10.2	0.4	7874	chr3L	1047313	intron	bab1 -	chr3L	1051250	intron	bab1 -	chr3L	1055187	intron	bab1 -	chr3L_4_1050001	chr3L_1050001	RAL-307_125b
1643	chr3L	1047326	1047380	chr3L	1055167	1055236	412	10	7842	7.5	7.5	7.5	1.2	7910	chr3L	1047326	intron	bab1 -	chr3L	1051281	intron	bab1 -	chr3L	1055236	intron	bab1 -	chr3L_10_1050001	chr3L_1050001	RAL-307_125b
1647	chr3L	1154078	1154158	chr3L	1163281	1163358	roo	43	9198	14.5	9.0	11.8	3.4	9280	chr3L	1154078	intron	bab2 -	chr3L	1158718	intron	bab2 -	chr3L	1163358	intron	bab2 -	chr3L_43_1155001	chr3L_1155001	RAL-307_125b
1650	chr3L	1219550	1219613	chr3L	1227333	1227396	412	20	7776	5.0	10.0	7.5	2.4	7846	chr3L	1219550	intron	mwh +	chr3L	1223473	intron	mwh +	chr3L	1227396	intron	mwh +	chr3L_20_1220001	chr3L_1220001	RAL-307_125b
1658	chr3L	1424763	1424772	chr3L	1430022	1430055	Rt1a	9	5276	0.5	7.5	4.0	1.8	5292	chr3L	1424763	intron	Ptp61F -	chr3L	1427409	intron	Ptp61F -	chr3L	1430055	intron	Ptp61F -	chr3L_9_1425001	chr3L_1425001	RAL-307_125b
1659	chr3L	1485693	1485737	chr3L	1486908	1486936	1360	13	1214	8.0	14.5	11.2	1.1	1243	chr3L	1485693	intron	stet -	chr3L	1486314	intron	stet -	chr3L	1486936	intron	stet -	chr3L_13_1485001	chr3L_1485001	RAL-307_125b
1660	chr3L	1505960	1505963	chr3L	1513607	1513610	17.6	6	7647	27.0	12.0	19.5	0.3	7650	chr3L	1505960	intron,intron	Psa +,cue -	chr3L	1509785	intron,intron	Psa +,cue -	chr3L	1513610	intron,intron	Psa +,cue -	chr3L_6_1505001	chr3L_1505001	RAL-307_125b
1661	chr3L	1505968	1506028	chr3L	1513605	1513658	17.6	21	7644	16.5	11.0	13.8	1.4	7690	chr3L	1505968	intron,intron	Psa +,cue -	chr3L	1509813	intron,intron	Psa +,cue -	chr3L	1513658	intron,intron	Psa +,cue -	chr3L_21_1505001	chr3L_1505001	RAL-307_125b
1665	chr3L	1740814	1740879	chr3L	1741107	1741171	pogo	33	288	14.5	17.0	15.8	2.0	357	chr3L	1740814	intron	Gk +	chr3L	1740992	intron	Gk +	chr3L	1741171	intron	Gk +	chr3L_33_1740001	chr3L_1740001	RAL-307_125b
1680	chr3L	2108200	2108280	chr3L	2113454	2113534	copia	18	5254	0.0	8.5	4.2	3.5	5334	chr3L	2108200	intron	sls -	chr3L	2110867	intron	sls -	chr3L	2113534	intron	sls -	chr3L_18_2110001	chr3L_2110001	RAL-307_125b
1694	chr3L	2447465	2447478	chr3L	2456669	2456684	roo	10	9204	24.0	10.0	17.0	0.6	9219	chr3L	2447465	intron	CG45186 +	chr3L	2452074	intron	CG45186 +	chr3L	2456684	intron	CG45186 +	chr3L_10_2450001	chr3L_2450001	RAL-307_125b
1695	chr3L	2447479	2447528	chr3L	2456668	2456714	roo	24	9197	11.5	9.5	10.5	2.1	9235	chr3L	2447479	intron	CG45186 +	chr3L	2452096	intron	CG45186 +	chr3L	2456714	intron	CG45186 +	chr3L_24_2450001	chr3L_2450001	RAL-307_125b
1707	chr3L	2751414	2751457	chr3L	2755759	2755802	F-element	17	4345	12.5	19.5	16.0	1.0	4388	chr3L	2751414	intron	Mrtf -	chr3L	2753608	intron	Mrtf -	chr3L	2755802	intron	Mrtf -	chr3L_17_2750001	chr3L_2750001	RAL-307_125b
1714	chr3L	2927796	2927798	chr3L	2936123	2936125	Tirant	4	8327	28.5	12.0	20.2	0.2	8329	chr3L	2927796	intron	Shab +	chr3L	2931960	intron	Shab +	chr3L	2936125	intron	Shab +	chr3L_4_2930001	chr3L_2930001	RAL-307_125b
1715	chr3L	2927800	2927866	chr3L	2936122	2936128	Tirant	51	8323	7.0	12.0	9.5	4.9	8328	chr3L	2927800	intron	Shab +	chr3L	2931964	intron	Shab +	chr3L	2936128	intron	Shab +	chr3L_51_2930001	chr3L_2930001	RAL-307_125b
1716	chr3L	2966686	2966722	chr3L	2974159	2974197	mdg1	16	7475	9.5	9.0	9.2	1.6	7511	chr3L	2966686	intergenic	not near genes	chr3L	2970442	intergenic	not near genes	chr3L	2974197	intergenic	not near genes	chr3L_16_2970001	chr3L_2970001	RAL-307_125b
1723	chr3L	3040279	3040356	chr3L	3042118	3042199	S-element	14	1839	11.5	0.0	5.8	2.1	1920	chr3L	3040279	3` UTR	CG2162 +	chr3L	3041239	intergenic	not near genes	chr3L	3042199	intergenic	Jafrac2 +	chr3L_14_3040001	chr3L_3040001	RAL-307_125b
1724	chr3L	3051696	3051755	chr3L	3051988	3052049	pogo	15	290	15.0	12.0	13.5	1.0	353	chr3L	3051696	3` UTR	CG32485 +	chr3L	3051872	intergenic	CG32485 +	chr3L	3052049	intergenic	CG32485 +,CG1271 +	chr3L_15_3050001	chr3L_3050001	RAL-307_125b
1725	chr3L	3061256	3061317	chr3L	3069870	3069877	Tirant	13	8614	8.5	5.5	7.0	1.6	8621	chr3L	3061256	intron	CG32486 -	chr3L	3065566	intron	CG32486 -	chr3L	3069877	intron	CG32486 -	chr3L_13_3065001	chr3L_3065001	RAL-307_125b
1728	chr3L	3281394	3281468	chr3L	3281939	3282013	Doc	20	535	4.0	9.0	6.5	2.7	619	chr3L	3281394	intron	CG12017 +	chr3L	3281704	intron	CG12017 +	chr3L	3282013	intron	CG12017 +	chr3L_20_3280001	chr3L_3280001	RAL-307_125b
1737	chr3L	3475039	3475046	chr3L	3475534	3475536	jockey	4	494	24.5	9.0	16.8	0.2	497	chr3L	3475039	intron	CG42324 +	chr3L	3475288	intron	CG42324 +	chr3L	3475536	intron	CG42324 +	chr3L_4_3475001	chr3L_3475001	RAL-307_125b
1738	chr3L	3475048	3475111	chr3L	3475533	3475544	jockey	5	471	4.0	9.0	6.5	0.7	496	chr3L	3475048	intron	CG42324 +	chr3L	3475296	intron	CG42324 +	chr3L	3475544	intron	CG42324 +	chr3L_5_3475001	chr3L_3475001	RAL-307_125b
1745	chr3L	3601255	3601278	chr3L	3606616	3606639	copia	15	5360	14.5	10.5	12.5	1.1	5384	chr3L	3601255	intron	Eip63E +	chr3L	3603947	intron	Eip63E +	chr3L	3606639	intron	Eip63E +	chr3L_15_3600001	chr3L_3600001	RAL-307_125b
1746	chr3L	3601280	3601318	chr3L	3606615	3606679	copia	19	5351	8.0	10.5	9.2	1.9	5399	chr3L	3601280	intron	Eip63E +	chr3L	3603980	intron	Eip63E +	chr3L	3606679	intron	Eip63E +	chr3L_19_3600001	chr3L_3600001	RAL-307_125b
1747	chr3L	3601322	3601327	chr3L	3606612	3606688	copia	6	5346	6.5	9.0	7.8	0.7	5366	chr3L	3601322	intron	Eip63E +	chr3L	3604005	intron	Eip63E +	chr3L	3606688	intron	Eip63E +	chr3L_6_3600001	chr3L_3600001	RAL-307_125b
1755	chr3L	3833692	3833769	chr3L	3833983	3834060	pogo	18	291	8.5	6.5	7.5	2.1	368	chr3L	3833692	intron	enc +	chr3L	3833876	intron	enc +	chr3L	3834060	intron	enc +	chr3L_18_3830001	chr3L_3830001	RAL-307_125b
1774	chr3L	4328689	4328758	chr3L	4336237	4336306	412	22	7547	5.0	7.5	6.2	3.1	7617	chr3L	4328689	intron	Cip4 -	chr3L	4332498	intron	Cip4 -	chr3L	4336306	exon	Cip4 -	chr3L_22_4330001	chr3L_4330001	RAL-307_125b
1791	chr3L	4901086	4901155	chr3L	4907326	4907395	diver	20	6235	10.5	9.0	9.8	1.9	6309	chr3L	4901086	intergenic	CG13704 +	chr3L	4904240	intergenic	not near genes	chr3L	4907395	intergenic	not near genes	chr3L_20_4900001	chr3L_4900001	RAL-307_125b
1795	chr3L	5034120	5034181	chr3L	5043311	5043383	roo	22	9199	3.0	6.5	4.8	3.8	9263	chr3L	5034120	intron	Con -	chr3L	5038752	intron	Con -	chr3L	5043383	intron	Con -	chr3L_22_5035001	chr3L_5035001	RAL-307_125b
1796	chr3L	5045409	5045479	chr3L	5050240	5050310	Doc	21	4831	12.0	11.5	11.8	1.6	4901	chr3L	5045409	5` UTR	Con -	chr3L	5047860	intron	Con -	chr3L	5050310	intron	Con -	chr3L_21_5045001	chr3L_5045001	RAL-307_125b
1806	chr3L	5299113	5299170	chr3L	5306599	5306656	Quasimodo	21	7485	5.5	1.0	3.2	5.0	7543	chr3L	5299113	intergenic	not near genes	chr3L	5302884	intergenic	not near genes	chr3L	5306656	intergenic	not near genes	chr3L_21_5300001	chr3L_5300001	RAL-307_125b
1811	chr3L	5458082	5458091	chr3L	5466696	5466712	Max-element	5	8638	4.5	13.0	8.8	0.5	8630	chr3L	5458082	intergenic	not near genes	chr3L	5462397	intergenic	not near genes	chr3L	5466712	intergenic	not near genes	chr3L_5_5460001	chr3L_5460001	RAL-307_125b
1817	chr3L	5537674	5537751	chr3L	5538066	5538143	jockey	22	390	10.0	11.0	10.5	1.9	469	chr3L	5537674	intergenic	not near genes	chr3L	5537908	intergenic	not near genes	chr3L	5538143	intergenic	CG10625 -	chr3L_22_5535001	chr3L_5535001	RAL-307_125b
1824	chr3L	5909988	5910056	chr3L	5910279	5910347	pogo	37	291	16.0	10.0	13.0	2.6	359	chr3L	5909988	intron	CG13288 +	chr3L	5910168	intron	CG13288 +	chr3L	5910347	intron	CG13288 +	chr3L_37_5910001	chr3L_5910001	RAL-307_125b
1826	chr3L	5926294	5926338	chr3L	5926510	5926578	BS	21	232	11.5	8.0	9.8	1.9	284	chr3L	5926294	intron	Vap-33B +	chr3L	5926436	intron	Vap-33B +	chr3L	5926578	intron	Vap-33B +	chr3L_21_5925001	chr3L_5925001	RAL-307_125b
1828	chr3L	6001638	6001646	chr3L	6004388	6004396	jockey	6	2750	15.0	0.5	7.8	0.7	2758	chr3L	6001638	intron	PVRAP +	chr3L	6003017	intron	PVRAP +	chr3L	6004396	intron	PVRAP +	chr3L_6_6000001	chr3L_6000001	RAL-307_125b
1829	chr3L	6001650	6001713	chr3L	6004386	6004463	jockey	24	2749	12.0	0.0	6.0	3.4	2813	chr3L	6001650	intron	PVRAP +	chr3L	6003056	intron	PVRAP +	chr3L	6004463	intron	PVRAP +	chr3L_24_6000001	chr3L_6000001	RAL-307_125b
1830	chr3L	6040326	6040384	chr3L	6042727	6042779	Doc	25	2402	15.0	11.5	13.2	1.8	2453	chr3L	6040326	intergenic	Jon65Aiv +	chr3L	6041552	intergenic	not near genes	chr3L	6042779	intergenic	not near genes	chr3L_25_6040001	chr3L_6040001	RAL-307_125b
1842	chr3L	6220872	6220940	chr3L	6230074	6230142	roo	32	9199	11.5	11.5	11.5	2.6	9270	chr3L	6220872	5` UTR	pncr008:3L +	chr3L	6225507	intergenic	not near genes	chr3L	6230142	intergenic	not near genes	chr3L_32_6225001	chr3L_6225001	RAL-307_125b
1844	chr3L	6334965	6335034	chr3L	6335486	6335555	297	32	517	9.5	11.5	10.5	2.8	590	chr3L	6334965	intron	CG13300 -	chr3L	6335260	intron	CG13300 -	chr3L	6335555	intron	CG13300 -	chr3L_32_6335001	chr3L_6335001	RAL-307_125b
1847	chr3L	6405616	6405691	chr3L	6432130	6432139	roo	30	26510	6.0	12.5	9.2	2.9	26523	chr3L	6405616	intron	CG42747 +	chr3L	6418878	intron	CG42747 +	chr3L	6432139	intron	CG42747 +	chr3L_30_6415001	chr3L_6415001	RAL-307_125b
1852	chr3L	6620564	6620601	chr3L	6621054	6621066	Rt1c	18	486	7.0	14.0	10.5	1.6	502	chr3L	6620564	intergenic	not near genes	chr3L	6620815	intergenic	not near genes	chr3L	6621066	intergenic	not near genes	chr3L_18_6620001	chr3L_6620001	RAL-307_125b
1853	chr3L	6781080	6781104	chr3L	6783143	6783167	Doc	13	2063	23.5	12.0	17.8	0.7	2087	chr3L	6781080	intergenic	not near genes	chr3L	6782124	intergenic	not near genes	chr3L	6783167	intergenic	not near genes	chr3L_13_6780001	chr3L_6780001	RAL-307_125b
1854	chr3L	6781107	6781154	chr3L	6783138	6783142	Doc	15	2055	8.5	10.5	9.5	1.4	2035	chr3L	6781107	intergenic	not near genes	chr3L	6782124	intergenic	not near genes	chr3L	6783142	intergenic	not near genes	chr3L_15_6780001	chr3L_6780001	RAL-307_125b
1856	chr3L	6855882	6855938	chr3L	6860717	6860773	Doc	14	4830	8.5	3.5	6.0	2.0	4891	chr3L	6855882	intergenic	not near genes	chr3L	6858328	intergenic	not near genes	chr3L	6860773	intergenic	not near genes	chr3L_14_6855001	chr3L_6855001	RAL-307_125b
1857	chr3L	6887477	6887513	chr3L	6895019	6895055	roo	21	7542	14.0	6.5	10.2	1.9	7578	chr3L	6887477	intergenic	not near genes	chr3L	6891266	intergenic	not near genes	chr3L	6895055	intergenic	not near genes	chr3L_21_6890001	chr3L_6890001	RAL-307_125b
1864	chr3L	6994846	6994891	chr3L	6995497	6995540	BS	9	651	0.0	1.5	0.8	5.0	694	chr3L	6994846	intergenic	bin +	chr3L	6995193	intergenic	not near genes	chr3L	6995540	intergenic	not near genes	chr3L_9_6995001	chr3L_6995001	RAL-307_125b
1871	chr3L	7129912	7129977	chr3L	7130154	7130204	BS	24	241	2.0	6.0	4.0	4.8	292	chr3L	7129912	intergenic	CG15829 +	chr3L	7130058	intergenic	CG15829 +	chr3L	7130204	intergenic	not near genes	chr3L_24_7130001	chr3L_7130001	RAL-307_125b
1880	chr3L	7377270	7377341	chr3L	7380425	7380496	297	29	3154	7.0	7.0	7.0	3.6	3226	chr3L	7377270	intron	SMSr -	chr3L	7378883	intron	SMSr -	chr3L	7380496	intron	SMSr -	chr3L_29_7375001	chr3L_7375001	RAL-307_125b
1885	chr3L	7498727	7498780	chr3L	7503552	7503607	F-element	18	4825	8.5	13.5	11.0	1.5	4880	chr3L	7498727	5` UTR	CG8539 -	chr3L	7501167	intergenic	not near genes	chr3L	7503607	intergenic	not near genes	chr3L_18_7500001	chr3L_7500001	RAL-307_125b
1897	chr3L	7793671	7793732	chr3L	7800773	7800834	297	36	7101	15.0	17.5	16.2	2.1	7163	chr3L	7793671	intron	CG32369 -	chr3L	7797252	intron	CG32369 -	chr3L	7800834	intron	CG32369 -	chr3L_36_7795001	chr3L_7795001	RAL-307_125b
1904	chr3L	7916786	7916796	chr3L	7926007	7926017	roo	7	9221	27.0	14.5	20.8	0.3	9231	chr3L	7916786	3` UTR	syd -	chr3L	7921402	intron	syd -	chr3L	7926017	3` UTR	syd -	chr3L_7_7920001	chr3L_7920001	RAL-307_125b
1905	chr3L	7916799	7916859	chr3L	7926004	7926055	roo	22	9219	8.5	13.0	10.8	1.9	9256	chr3L	7916799	3` UTR	syd -	chr3L	7921427	intron	syd -	chr3L	7926055	3` UTR	syd -	chr3L_22_7920001	chr3L_7920001	RAL-307_125b
1910	chr3L	7985329	7985386	chr3L	7987700	7987764	NOF	21	2375	12.0	8.5	10.2	1.9	2435	chr3L	7985329	intron	nmo +	chr3L	7986546	intron	nmo +	chr3L	7987764	intron	nmo +	chr3L_21_7985001	chr3L_7985001	RAL-307_125b
1918	chr3L	8233542	8233590	chr3L	8238854	8238858	Rt1a	12	5306	11.5	16.0	13.8	0.8	5316	chr3L	8233542	intron	CG7213 -	chr3L	8236200	intron	CG7213 -	chr3L	8238858	intron,intron	CG7213 -,Dscam4 +	chr3L_12_8235001	chr3L_8235001	RAL-307_125b
1930	chr3L	8481759	8481805	chr3L	8490958	8491014	roo	16	9197	8.0	11.0	9.5	1.5	9255	chr3L	8481759	intron	CG43163 -	chr3L	8486386	intron	CG43163 -	chr3L	8491014	intron	CG43163 -	chr3L_16_8485001	chr3L_8485001	RAL-307_125b
1931	chr3L	8498265	8498320	chr3L	8505772	8505837	blood	33	7517	9.5	8.0	8.8	3.4	7572	chr3L	8498265	intron	CG43163 -	chr3L	8502051	intron	CG43163 -	chr3L	8505837	intron	CG43163 -	chr3L_33_8500001	chr3L_8500001	RAL-307_125b
1935	chr3L	8791238	8791304	chr3L	8796708	8796773	I-element	17	5469	5.0	3.0	4.0	3.4	5535	chr3L	8791238	exon	Fhos +	chr3L	8794006	intron	Fhos +	chr3L	8796773	intron	Fhos +	chr3L_17_8790001	chr3L_8790001	RAL-307_125b
1945	chr3L	9076891	9076899	chr3L	9084501	9084509	412	5	7610	27.5	16.0	21.8	0.2	7618	chr3L	9076891	exon	Tequila +	chr3L	9080700	intron	Tequila +	chr3L	9084509	exon	Tequila +	chr3L_5_9080001	chr3L_9080001	RAL-307_125b
1946	chr3L	9076901	9076960	chr3L	9084494	9084495	412	22	7600	10.5	13.5	12.0	1.7	7594	chr3L	9076901	exon	Tequila +	chr3L	9080698	intron	Tequila +	chr3L	9084495	exon	Tequila +	chr3L_22_9080001	chr3L_9080001	RAL-307_125b
1948	chr3L	9130516	9130579	chr3L	9134327	9134390	412	12	3804	8.5	8.0	8.2	1.3	3874	chr3L	9130516	intergenic	bol -	chr3L	9132453	intergenic	not near genes	chr3L	9134390	intergenic	Dhpr +	chr3L_12_9130001	chr3L_9130001	RAL-307_125b
1949	chr3L	9164649	9164682	chr3L	9166166	9166199	hobo	14	1516	18.5	0.5	9.5	1.3	1550	chr3L	9164649	intron	Rdl -	chr3L	9165424	intron	Rdl -	chr3L	9166199	intron	Rdl -	chr3L_14_9165001	chr3L_9165001	RAL-307_125b
1950	chr3L	9219217	9219264	chr3L	9219918	9219986	jockey	17	713	5.0	3.0	4.0	3.4	769	chr3L	9219217	intergenic	not near genes	chr3L	9219602	intergenic	not near genes	chr3L	9219986	intergenic	not near genes	chr3L_17_9215001	chr3L_9215001	RAL-307_125b
1953	chr3L	9270578	9270640	chr3L	9278383	9278413	roo	11	7795	9.0	8.5	8.8	1.1	7835	chr3L	9270578	intron	GluRIB +	chr3L	9274496	intron	GluRIB +	chr3L	9278413	exon	GluRIB +	chr3L_11_9270001	chr3L_9270001	RAL-307_125b
1958	chr3L	9443491	9443493	chr3L	9445328	9445330	S-element	4	1837	12.0	16.5	14.2	0.3	1839	chr3L	9443491	intron	CG33926 +	chr3L	9444410	intron	CG33926 +	chr3L	9445330	intron	CG33926 +	chr3L_4_9440001	chr3L_9440001	RAL-307_125b
1959	chr3L	9443495	9443543	chr3L	9445306	9445364	S-element	26	1833	6.5	13.0	9.8	2.4	1869	chr3L	9443495	intron	CG33926 +	chr3L	9444430	intron	CG33926 +	chr3L	9445364	intron	CG33926 +	chr3L_26_9440001	chr3L_9440001	RAL-307_125b
1961	chr3L	9501661	9501730	chr3L	9502197	9502205	roo	32	532	9.0	12.5	10.8	2.7	544	chr3L	9501661	intron	path -	chr3L	9501933	intron	path -	chr3L	9502205	intron	path -	chr3L_32_9500001	chr3L_9500001	RAL-307_125b
1967	chr3L	9526447	9526510	chr3L	9528177	9528209	Doc	28	1728	5.5	12.5	9.0	2.8	1762	chr3L	9526447	intergenic	not near genes	chr3L	9527328	intergenic	not near genes	chr3L	9528209	intergenic	not near genes	chr3L_28_9525001	chr3L_9525001	RAL-307_125b
1968	chr3L	9533733	9533763	chr3L	9541330	9541373	412	4	7604	12.0	12.0	12.0	0.3	7640	chr3L	9533733	intergenic	not near genes	chr3L	9537553	intergenic	not near genes	chr3L	9541373	intergenic	not near genes	chr3L_4_9535001	chr3L_9535001	RAL-307_125b
1969	chr3L	9575863	9575949	chr3L	9580991	9581042	jockey	32	5124	8.5	5.0	6.8	4.1	5179	chr3L	9575863	intron	CG42673 +	chr3L	9578452	intron	CG42673 +	chr3L	9581042	intron	CG42673 +	chr3L_32_9575001	chr3L_9575001	RAL-307_125b
1984	chr3L	9929636	9929643	chr3L	9938456	9938473	roo	6	8826	29.0	9.5	19.2	0.3	8837	chr3L	9929636	intron	CG34356 +	chr3L	9934054	intron	CG34356 +	chr3L	9938473	intron	CG34356 +	chr3L_6_9930001	chr3L_9930001	RAL-307_125b
1985	chr3L	9929644	9929699	chr3L	9938453	9938504	roo	27	8826	10.0	9.5	9.8	2.5	8860	chr3L	9929644	intron	CG34356 +	chr3L	9934074	intron	CG34356 +	chr3L	9938504	intron	CG34356 +	chr3L_27_9930001	chr3L_9930001	RAL-307_125b
2008	chr3L	10414899	10414903	chr3L	10417314	10417323	Doc	4	2419	21.0	7.0	14.0	0.3	2424	chr3L	10414899	intergenic	CG12362 +	chr3L	10416111	intergenic	not near genes	chr3L	10417323	intergenic	not near genes	chr3L_4_10415001	chr3L_10415001	RAL-307_125b
2009	chr3L	10414904	10414974	chr3L	10417310	10417358	Doc	17	2416	7.5	5.0	6.2	2.4	2454	chr3L	10414904	intergenic	CG12362 +	chr3L	10416131	intergenic	not near genes	chr3L	10417358	intergenic	not near genes	chr3L_17_10415001	chr3L_10415001	RAL-307_125b
2036	chr3L	11087015	11087084	chr3L	11088853	11088923	S-element	35	1836	11.5	5.5	8.5	3.7	1908	chr3L	11087015	intron	JIL-1 -	chr3L	11087969	intron	JIL-1 -	chr3L	11088923	intron	JIL-1 -	chr3L_35_11085001	chr3L_11085001	RAL-307_125b
2038	chr3L	11105253	11105324	chr3L	11107010	11107050	X-element	28	1756	7.5	4.0	5.8	4.1	1797	chr3L	11105253	intergenic	not near genes	chr3L	11106152	intergenic	not near genes	chr3L	11107050	exon	CG32073 -	chr3L_28_11105001	chr3L_11105001	RAL-307_125b
2044	chr3L	11264426	11264433	chr3L	11271425	11271435	17.6	5	7000	25.5	9.5	17.5	0.3	7009	chr3L	11264426	intergenic	not near genes	chr3L	11267930	intergenic	not near genes	chr3L	11271435	intergenic	not near genes	chr3L_5_11265001	chr3L_11265001	RAL-307_125b
2045	chr3L	11264434	11264455	chr3L	11271420	11271457	17.6	16	6999	22.0	8.0	15.0	1.0	7023	chr3L	11264434	intergenic	not near genes	chr3L	11267946	intergenic	not near genes	chr3L	11271457	intergenic	not near genes	chr3L_16_11265001	chr3L_11265001	RAL-307_125b
2046	chr3L	11264457	11264483	chr3L	11271419	11271464	17.6	8	6995	16.0	7.5	11.8	0.6	7007	chr3L	11264457	intergenic	not near genes	chr3L	11267960	intergenic	not near genes	chr3L	11271464	intergenic	not near genes	chr3L_8_11265001	chr3L_11265001	RAL-307_125b
2047	chr3L	11329658	11329719	chr3L	11332913	11332974	jockey	15	3253	11.0	11.0	11.0	1.2	3316	chr3L	11329658	intergenic	not near genes	chr3L	11331316	intergenic	not near genes	chr3L	11332974	intergenic	not near genes	chr3L_15_11330001	chr3L_11330001	RAL-307_125b
2051	chr3L	11499015	11499029	chr3L	11508224	11508238	roo	5	9209	24.5	0.5	12.5	0.4	9223	chr3L	11499015	3` UTR	chrb +	chr3L	11503626	intergenic	not near genes	chr3L	11508238	intergenic	CG33500 +	chr3L_5_11500001	chr3L_11500001	RAL-307_125b
2052	chr3L	11564799	11564803	chr3L	11572420	11572421	412	5	7634	6.5	10.5	8.5	0.5	7622	chr3L	11564799	exon	CG33267 +	chr3L	11568610	intron	CG33267 +	chr3L	11572421	exon	CG33267 +	chr3L_5_11565001	chr3L_11565001	RAL-307_125b
2058	chr3L	11723047	11723107	chr3L	11727892	11727952	Doc	34	4845	12.5	12.5	12.5	2.5	4905	chr3L	11723047	3` UTR	Bmcp +	chr3L	11725500	intron	Bmcp +	chr3L	11727952	3` UTR	Bmcp +	chr3L_34_11725001	chr3L_11725001	RAL-307_125b
2066	chr3L	11864515	11864581	chr3L	11865850	11865921	pogo	31	1337	12.5	12.0	12.2	2.3	1406	chr3L	11864515	intron	CG44837 -	chr3L	11865218	intron	CG44837 -	chr3L	11865921	intron	CG44837 -	chr3L_31_11865001	chr3L_11865001	RAL-307_125b
2113	chr3L	12874877	12874954	chr3L	12877219	12877296	jockey	37	2339	7.0	8.5	7.8	4.2	2419	chr3L	12874877	intergenic	not near genes	chr3L	12876086	intergenic	not near genes	chr3L	12877296	intergenic	not near genes	chr3L_37_12875001	chr3L_12875001	RAL-307_125b
2116	chr3L	12919260	12919309	chr3L	12924760	12924845	Rt1c	9	5513	5.5	4.0	4.8	1.6	5585	chr3L	12919260	intergenic	not near genes	chr3L	12922052	intergenic	not near genes	chr3L	12924845	intergenic	not near genes	chr3L_9_12920001	chr3L_12920001	RAL-307_125b
2118	chr3L	12957741	12957812	chr3L	12962273	12962344	copia	32	4529	11.0	13.0	12.0	2.5	4603	chr3L	12957741	intergenic	not near genes	chr3L	12960042	intergenic	not near genes	chr3L	12962344	intergenic	not near genes	chr3L_32_12960001	chr3L_12960001	RAL-307_125b
2137	chr3L	13525126	13525181	chr3L	13532962	13533022	roo	32	7842	14.5	14.5	14.5	2.1	7896	chr3L	13525126	intergenic	not near genes	chr3L	13529074	intergenic	not near genes	chr3L	13533022	intergenic	not near genes	chr3L_32_13525001	chr3L_13525001	RAL-307_125b
2146	chr3L	13804501	13804546	chr3L	13822836	13822882	roo	21	18334	11.5	11.5	11.5	1.7	18381	chr3L	13804501	intergenic	not near genes	chr3L	13813692	intergenic	not near genes	chr3L	13822882	intergenic	not near genes	chr3L_21_13810001	chr3L_13810001	RAL-307_125b
2147	chr3L	13804548	13804561	chr3L	13822884	13822889	roo	4	18332	8.0	23.0	15.5	0.2	18341	chr3L	13804548	intergenic	not near genes	chr3L	13813718	intergenic	not near genes	chr3L	13822889	intergenic	not near genes	chr3L_4_13810001	chr3L_13810001	RAL-307_125b
2165	chr3L	14245527	14245593	chr3L	14245671	14245737	1360	21	139	5.5	9.5	7.5	2.5	210	chr3L	14245527	3` UTR	CR44561 -	chr3L	14245632	3` UTR	CR44561 -	chr3L	14245737	intergenic	CR44561 -,CR44560 +	chr3L_21_14245001	chr3L_14245001	RAL-307_125b
2166	chr3L	14267363	14267393	chr3L	14271824	14271837	F-element	7	4455	8.5	0.0	4.2	1.3	4474	chr3L	14267363	intergenic	not near genes	chr3L	14269600	intergenic	not near genes	chr3L	14271837	intergenic	not near genes	chr3L_7_14265001	chr3L_14265001	RAL-307_125b
2167	chr3L	14295942	14296006	chr3L	14296478	14296542	roo	15	535	2.5	10.5	6.5	2.0	600	chr3L	14295942	intron	fz +	chr3L	14296242	intron	fz +	chr3L	14296542	intron	fz +	chr3L_15_14295001	chr3L_14295001	RAL-307_125b
2177	chr3L	14468411	14468461	chr3L	14473667	14473717	copia	25	5256	13.5	11.5	12.5	1.9	5306	chr3L	14468411	intron	bbg -	chr3L	14471064	intron	bbg -	chr3L	14473717	intron	bbg -	chr3L_25_14470001	chr3L_14470001	RAL-307_125b
2181	chr3L	14524291	14524327	chr3L	14529096	14529134	F-element	7	4805	6.5	2.5	4.5	1.3	4843	chr3L	14524291	intron	bbg -	chr3L	14526712	intron	bbg -	chr3L	14529134	intron	bbg -	chr3L_7_14525001	chr3L_14525001	RAL-307_125b
2188	chr3L	14721172	14721188	chr3L	14723061	14723076	Rt1c	5	1887	9.0	11.5	10.2	0.4	1904	chr3L	14721172	intron	ome +	chr3L	14722124	intron	ome +	chr3L	14723076	intron	ome +	chr3L_5_14720001	chr3L_14720001	RAL-307_125b
2189	chr3L	14725568	14725576	chr3L	14728612	14728620	Doc	4	3044	18.5	14.5	16.5	0.2	3052	chr3L	14725568	intron	ome +	chr3L	14727094	intron	ome +	chr3L	14728620	intron	ome +	chr3L_4_14725001	chr3L_14725001	RAL-307_125b
2190	chr3L	14725577	14725616	chr3L	14728611	14728651	Doc	16	3036	11.0	14.0	12.5	1.2	3074	chr3L	14725577	intron	ome +	chr3L	14727114	intron	ome +	chr3L	14728651	intron	ome +	chr3L_16_14725001	chr3L_14725001	RAL-307_125b
2193	chr3L	14970715	14970759	chr3L	14971076	14971120	F-element	17	361	8.5	3.0	5.8	2.5	405	chr3L	14970715	intergenic	Tom +	chr3L	14970918	intergenic	not near genes	chr3L	14971120	intergenic	not near genes	chr3L_17_14970001	chr3L_14970001	RAL-307_125b
2201	chr3L	15085005	15085010	chr3L	15086221	15086226	1360	4	1216	23.0	8.5	15.8	0.2	1221	chr3L	15085005	intron	cp309 -	chr3L	15085616	intron	cp309 -	chr3L	15086226	intron	cp309 -	chr3L_4_15085001	chr3L_15085001	RAL-307_125b
2202	chr3L	15085014	15085076	chr3L	15086215	15086271	1360	29	1214	8.5	8.5	8.5	3.1	1257	chr3L	15085014	intron	cp309 -	chr3L	15085642	intron	cp309 -	chr3L	15086271	intron	cp309 -	chr3L_29_15085001	chr3L_15085001	RAL-307_125b
2210	chr3L	15295730	15295751	chr3L	15298623	15298644	gypsy5	16	2892	22.5	15.5	19.0	0.8	2914	chr3L	15295730	intergenic	not near genes	chr3L	15297187	intergenic	not near genes	chr3L	15298644	intergenic	Best4 +	chr3L_16_15295001	chr3L_15295001	RAL-307_125b
2211	chr3L	15295752	15295793	chr3L	15298618	15298686	gypsy5	23	2891	13.0	12.5	12.8	1.7	2934	chr3L	15295752	intergenic	not near genes	chr3L	15297219	intergenic	not near genes	chr3L	15298686	intergenic	Best4 +	chr3L_23_15295001	chr3L_15295001	RAL-307_125b
2216	chr3L	15423716	15423779	chr3L	15426610	15426673	opus	14	2892	5.0	3.5	4.2	2.7	2957	chr3L	15423716	intergenic	not near genes	chr3L	15425194	intergenic	not near genes	chr3L	15426673	intergenic	not near genes	chr3L_14_15425001	chr3L_15425001	RAL-307_125b
2234	chr3L	15899218	15899243	chr3L	15899796	15899860	jockey	7	594	5.5	3.5	4.5	1.3	642	chr3L	15899218	intergenic	pHCl -	chr3L	15899539	intergenic	not near genes	chr3L	15899860	intergenic	sff -	chr3L_7_15895001	chr3L_15895001	RAL-307_125b
2235	chr3L	15929148	15929219	chr3L	15938341	15938416	roo	15	9194	2.0	8.5	5.2	2.4	9268	chr3L	15929148	intron	Pka-C3 -	chr3L	15933782	intron	Pka-C3 -	chr3L	15938416	intron	Pka-C3 -	chr3L_15_15930001	chr3L_15930001	RAL-307_125b
2240	chr3L	16184061	16184133	chr3L	16188930	16188995	X-element	24	4867	9.0	10.0	9.5	2.3	4934	chr3L	16184061	intergenic	not near genes	chr3L	16186528	intergenic	not near genes	chr3L	16188995	intergenic	not near genes	chr3L_24_16185001	chr3L_16185001	RAL-307_125b
2243	chr3L	16443799	16443877	chr3L	16446189	16446267	Doc	45	2388	9.5	15.0	12.2	3.4	2468	chr3L	16443799	intron,intron	CG33158 +,dsx-c73A -	chr3L	16445033	intron,intron	CG33158 +,dsx-c73A -	chr3L	16446267	intron,intron	CG33158 +,dsx-c73A -	chr3L_45_16445001	chr3L_16445001	RAL-307_125b
2248	chr3L	16493939	16493977	chr3L	16494504	16494544	jockey	25	565	15.0	16.0	15.5	1.5	605	chr3L	16493939	intron,exon,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494242	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494544	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L_25_16490001	chr3L_16490001	RAL-307_125b
2249	chr3L	16493978	16494003	chr3L	16494501	16494559	jockey	15	561	8.0	14.5	11.2	1.2	581	chr3L	16493978	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494268	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494559	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L_15_16490001	chr3L_16490001	RAL-307_125b
2256	chr3L	16616477	16616533	chr3L	16621846	16621911	297	19	5372	17.0	11.0	14.0	1.3	5434	chr3L	16616477	3` UTR	Abl -	chr3L	16619194	3` UTR	Abl -	chr3L	16621911	3` UTR	Abl -	chr3L_19_16615001	chr3L_16615001	RAL-307_125b
2260	chr3L	16683984	16684029	chr3L	16689255	16689300	copia	15	5271	6.0	10.0	8.0	1.7	5316	chr3L	16683984	intron,intron	Lasp -,CG43954 -	chr3L	16686642	intron,intron	Lasp -,CG43954 -	chr3L	16689300	intron,intron,5` UTR	Lasp -,CG43954 -,CR45179 +	chr3L_15_16685001	chr3L_16685001	RAL-307_125b
2276	chr3L	16945686	16945705	chr3L	16954889	16954893	roo	5	9197	16.5	10.0	13.2	0.4	9207	chr3L	16945686	exon	Obp73a +	chr3L	16950290	intergenic	not near genes	chr3L	16954893	5` UTR	Nc73EF +	chr3L_5_16950001	chr3L_16950001	RAL-307_125b
2277	chr3L	16945714	16945753	chr3L	16954882	16954956	roo	22	9192	8.5	7.5	8.0	2.4	9242	chr3L	16945714	exon	Obp73a +	chr3L	16950335	intergenic	not near genes	chr3L	16954956	5` UTR	Nc73EF +	chr3L_22_16950001	chr3L_16950001	RAL-307_125b
2279	chr3L	17034890	17034950	chr3L	17035123	17035187	G2	25	238	10.5	10.0	10.2	2.2	297	chr3L	17034890	intergenic	not near genes	chr3L	17035038	intergenic	not near genes	chr3L	17035187	intergenic	beg +	chr3L_25_17035001	chr3L_17035001	RAL-307_125b
2280	chr3L	17084965	17085032	chr3L	17094164	17094231	roo	33	9199	9.0	15.0	12.0	2.5	9266	chr3L	17084965	intron	Rbp6 -	chr3L	17089598	intron	Rbp6 -	chr3L	17094231	intron	Rbp6 -	chr3L_33_17085001	chr3L_17085001	RAL-307_125b
2290	chr3L	17516952	17516969	chr3L	17524548	17524574	412	13	7605	17.5	17.5	17.5	0.7	7622	chr3L	17516952	intron	CG7564 +	chr3L	17520763	intron	CG7564 +	chr3L	17524574	3` UTR	CG7564 +	chr3L_13_17520001	chr3L_17520001	RAL-307_125b
2291	chr3L	17516975	17517002	chr3L	17524543	17524604	412	8	7602	14.5	15.5	15.0	0.5	7629	chr3L	17516975	intron	CG7564 +	chr3L	17520790	intron	CG7564 +	chr3L	17524604	3` UTR	CG7564 +	chr3L_8_17520001	chr3L_17520001	RAL-307_125b
2299	chr3L	17730807	17730872	chr3L	17738187	17738252	mdg1	39	7378	8.0	11.5	9.8	3.6	7445	chr3L	17730807	intron	Ccn +	chr3L	17734530	intron	Ccn +	chr3L	17738252	intron	Ccn +	chr3L_39_17730001	chr3L_17730001	RAL-307_125b
2306	chr3L	17799768	17799780	chr3L	17801605	17801617	S-element	9	1837	29.5	12.5	21.0	0.4	1849	chr3L	17799768	intron	NUCB1 -	chr3L	17800692	intron	NUCB1 -	chr3L	17801617	intron	NUCB1 -	chr3L_9_17800001	chr3L_17800001	RAL-307_125b
2307	chr3L	17799782	17799833	chr3L	17801601	17801670	S-element	41	1835	11.0	12.5	11.8	3.2	1888	chr3L	17799782	intron	NUCB1 -	chr3L	17800726	intron	NUCB1 -	chr3L	17801670	intron	NUCB1 -	chr3L_41_17800001	chr3L_17800001	RAL-307_125b
2309	chr3L	17918338	17918397	chr3L	17921191	17921250	opus	9	2853	9.5	9.5	9.5	0.9	2912	chr3L	17918338	intergenic	not near genes	chr3L	17919794	intergenic	not near genes	chr3L	17921250	intergenic	not near genes	chr3L_9_17915001	chr3L_17915001	RAL-307_125b
2316	chr3L	18047662	18047733	chr3L	18056769	18056840	roo	34	9107	10.0	15.0	12.5	2.5	9178	chr3L	18047662	intron	Eip75B -	chr3L	18052251	intron	Eip75B -	chr3L	18056840	intron	Eip75B -	chr3L_34_18050001	chr3L_18050001	RAL-307_125b
2350	chr3L	18506092	18506147	chr3L	18509605	18509618	F-element	34	3510	12.0	10.0	11.0	2.8	3526	chr3L	18506092	intergenic	not near genes	chr3L	18507855	intergenic	not near genes	chr3L	18509618	intergenic	not near genes	chr3L_34_18505001	chr3L_18505001	RAL-307_125b
2352	chr3L	18514865	18514927	chr3L	18520106	18520110	BS	39	5238	14.0	15.5	14.8	2.5	5245	chr3L	18514865	intergenic	not near genes	chr3L	18517488	intergenic	not near genes	chr3L	18520110	intergenic	not near genes	chr3L_39_18515001	chr3L_18515001	RAL-307_125b
2354	chr3L	18528586	18528652	chr3L	18537797	18537863	roo	30	9210	8.0	7.0	7.5	3.5	9277	chr3L	18528586	intergenic	not near genes	chr3L	18533224	intergenic	not near genes	chr3L	18537863	intergenic	not near genes	chr3L_30_18530001	chr3L_18530001	RAL-307_125b
2359	chr3L	18593903	18593976	chr3L	18595933	18596009	Doc	27	2030	8.5	4.0	6.2	3.8	2106	chr3L	18593903	intergenic	term -	chr3L	18594956	intergenic	not near genes	chr3L	18596009	intergenic	CR45389 +	chr3L_27_18590001	chr3L_18590001	RAL-307_125b
2366	chr3L	18710717	18710784	chr3L	18718719	18718786	Stalker2	30	8001	14.0	8.5	11.2	2.5	8069	chr3L	18710717	intergenic	not near genes	chr3L	18714752	intergenic	not near genes	chr3L	18718786	intergenic	not near genes	chr3L_30_18710001	chr3L_18710001	RAL-307_125b
2370	chr3L	18772365	18772431	chr3L	18781096	18781162	roo	36	8731	9.0	11.5	10.2	3.2	8797	chr3L	18772365	intron	ftz-f1 -	chr3L	18776764	intron	ftz-f1 -	chr3L	18781162	intron	ftz-f1 -	chr3L_36_18775001	chr3L_18775001	RAL-307_125b
2372	chr3L	18784706	18784726	chr3L	18784844	18784874	INE-1	11	146	22.0	7.5	14.8	0.7	168	chr3L	18784706	intron	ftz-f1 -	chr3L	18784790	intron	ftz-f1 -	chr3L	18784874	intron	ftz-f1 -	chr3L_11_18780001	chr3L_18780001	RAL-307_125b
2375	chr3L	18833738	18833805	chr3L	18834952	18835019	1360	34	1210	12.0	13.5	12.8	2.5	1281	chr3L	18833738	intron	Indy -	chr3L	18834378	intron	Indy -	chr3L	18835019	intron	Indy -	chr3L_34_18830001	chr3L_18830001	RAL-307_125b
2385	chr3L	19008825	19008867	chr3L	19009196	19009255	jockey	16	383	0.0	9.0	4.5	2.9	430	chr3L	19008825	intron	nkd -	chr3L	19009040	intron	nkd -	chr3L	19009255	intron	nkd -	chr3L_16_19005001	chr3L_19005001	RAL-307_125b
2389	chr3L	19115604	19115668	chr3L	19115819	19115888	BS	26	224	11.0	6.0	8.5	2.7	284	chr3L	19115604	intron	CG14082 -	chr3L	19115746	intron	CG14082 -	chr3L	19115888	intron	CG14082 -	chr3L_26_19115001	chr3L_19115001	RAL-307_125b
2390	chr3L	19117002	19117068	chr3L	19124498	19124551	mdg1	34	7496	11.0	7.5	9.2	3.3	7549	chr3L	19117002	intron	CG14082 -	chr3L	19120776	intron	CG14082 -	chr3L	19124551	intron	CG14082 -	chr3L_34_19120001	chr3L_19120001	RAL-307_125b
2392	chr3L	19208015	19208088	chr3L	19209439	19209486	Doc	18	1416	3.0	4.0	3.5	4.0	1471	chr3L	19208015	intron	fz2 -	chr3L	19208750	intron	fz2 -	chr3L	19209486	intron	fz2 -	chr3L_18_19205001	chr3L_19205001	RAL-307_125b
2401	chr3L	19398895	19398930	chr3L	19403656	19403697	F-element	6	4764	5.5	5.5	5.5	0.9	4802	chr3L	19398895	intron	CG32206 -	chr3L	19401296	intron	CG32206 -	chr3L	19403697	intron	CG32206 -	chr3L_6_19400001	chr3L_19400001	RAL-307_125b
2407	chr3L	19820251	19820316	chr3L	19827850	19827915	412	27	7599	6.0	7.5	6.8	3.5	7664	chr3L	19820251	intron	Deaf1 +	chr3L	19824083	intron	Deaf1 +	chr3L	19827915	intron	Deaf1 +	chr3L_27_19820001	chr3L_19820001	RAL-307_125b
2409	chr3L	19848467	19848504	chr3L	19857707	19857719	roo	15	9238	21.5	16.5	19.0	0.8	9252	chr3L	19848467	intron	Papss +	chr3L	19853093	intron	Papss +	chr3L	19857719	intron	Papss +	chr3L_15_19850001	chr3L_19850001	RAL-307_125b
2410	chr3L	19848508	19848532	chr3L	19857689	19857773	roo	19	9233	15.0	10.5	12.8	1.4	9265	chr3L	19848508	intron	Papss +	chr3L	19853140	intron	Papss +	chr3L	19857773	intron	Papss +	chr3L_19_19850001	chr3L_19850001	RAL-307_125b
2411	chr3L	19861780	19861850	chr3L	19863618	19863656	S-element	24	1834	14.5	7.5	11.0	2.0	1876	chr3L	19861780	5` UTR	CR45433 +	chr3L	19862718	intergenic	not near genes	chr3L	19863656	intergenic	not near genes	chr3L_24_19860001	chr3L_19860001	RAL-307_125b
2417	chr3L	20113613	20113679	chr3L	20122920	20122986	roo	39	9306	10.0	10.5	10.2	3.5	9373	chr3L	20113613	intergenic	not near genes	chr3L	20118300	intergenic	not near genes	chr3L	20122986	intergenic	not near genes	chr3L_39_20115001	chr3L_20115001	RAL-307_125b
2422	chr3L	20212565	20212584	chr3L	20218192	20218211	mdg3	14	5627	20.5	0.5	10.5	1.2	5646	chr3L	20212565	intergenic	CG7017 -	chr3L	20215388	intergenic	not near genes	chr3L	20218211	intergenic	CG6933 -	chr3L_14_20215001	chr3L_20215001	RAL-307_125b
2424	chr3L	20257287	20257292	chr3L	20258457	20258463	pogo	5	1170	33.0	13.5	23.2	0.2	1176	chr3L	20257287	intron	rdgC +	chr3L	20257875	intron	rdgC +	chr3L	20258463	intron	rdgC +	chr3L_5_20255001	chr3L_20255001	RAL-307_125b
2425	chr3L	20257293	20257356	chr3L	20258452	20258526	pogo	28	1166	11.5	11.0	11.2	2.3	1233	chr3L	20257293	intron	rdgC +	chr3L	20257910	intron	rdgC +	chr3L	20258526	intron	rdgC +	chr3L_28_20255001	chr3L_20255001	RAL-307_125b
2427	chr3L	20321108	20321132	chr3L	20342874	20342903	17.6	4	21769	17.0	66.5	41.8	0.1	21795	chr3L	20321108	exon	Spn77Bb +	chr3L	20332006	intergenic	not near genes	chr3L	20342903	exon	Spn77Bc +	chr3L_4_20330001	chr3L_20330001	RAL-307_125b
2432	chr3L	20476714	20476782	chr3L	20484363	20484418	springer	39	7647	6.5	15.0	10.8	3.3	7704	chr3L	20476714	3` UTR	isoQC +	chr3L	20480566	intergenic	not near genes	chr3L	20484418	3` UTR	ZnT77C -	chr3L_39_20480001	chr3L_20480001	RAL-307_125b
2434	chr3L	20590037	20590084	chr3L	20590605	20590673	412	20	580	7.5	7.0	7.2	2.4	636	chr3L	20590037	intergenic	not near genes	chr3L	20590355	intergenic	not near genes	chr3L	20590673	intergenic	not near genes	chr3L_20_20590001	chr3L_20590001	RAL-307_125b
2437	chr3L	20821233	20821311	chr3L	20824894	20824972	NOF	41	3657	10.5	8.0	9.2	4.0	3739	chr3L	20821233	intron	Pka-R1 +	chr3L	20823102	intron	Pka-R1 +	chr3L	20824972	intron	Pka-R1 +	chr3L_41_20820001	chr3L_20820001	RAL-307_125b
2441	chr3L	21014872	21014945	chr3L	21023403	21023467	Tirant	14	8520	7.0	7.0	7.0	1.8	8595	chr3L	21014872	intron	skd -	chr3L	21019170	intron	skd -	chr3L	21023467	intron	skd -	chr3L_14_21015001	chr3L_21015001	RAL-307_125b
2444	chr3L	21151822	21151856	chr3L	21156956	21156990	flea	22	5134	11.0	9.0	10.0	2.0	5168	chr3L	21151822	intron	Ac78C -	chr3L	21154406	intron	Ac78C -	chr3L	21156990	intron	Ac78C -	chr3L_22_21150001	chr3L_21150001	RAL-307_125b
2445	chr3L	21151857	21151881	chr3L	21156949	21157015	flea	19	5127	9.0	8.0	8.5	2.0	5158	chr3L	21151857	intron	Ac78C -	chr3L	21154436	intron	Ac78C -	chr3L	21157015	intron	Ac78C -	chr3L_19_21150001	chr3L_21150001	RAL-307_125b
2446	chr3L	21243738	21243745	chr3L	21251309	21251323	412	4	7579	9.0	9.0	9.0	0.4	7585	chr3L	21243738	intron	Eip78C +	chr3L	21247530	intron	Eip78C +	chr3L	21251323	intron	Eip78C +	chr3L_4_21245001	chr3L_21245001	RAL-307_125b
2448	chr3L	21306109	21306174	chr3L	21315318	21315361	roo	30	9207	10.0	15.0	12.5	2.2	9252	chr3L	21306109	3` UTR	CG7632 +	chr3L	21310735	intron	Pc -	chr3L	21315361	3` UTR	Pc -	chr3L_30_21310001	chr3L_21310001	RAL-307_125b
2450	chr3L	21372677	21372749	chr3L	21379235	21379306	McClintock	14	6558	5.5	6.5	6.0	2.0	6629	chr3L	21372677	intergenic	not near genes	chr3L	21375992	intergenic	not near genes	chr3L	21379306	intergenic	not near genes	chr3L_14_21375001	chr3L_21375001	RAL-307_125b
2453	chr3L	21498825	21498847	chr3L	21500511	21500533	1360	10	1684	12.5	14.5	13.5	0.7	1708	chr3L	21498825	5` UTR,intron	CR43933 +,Glg1 -	chr3L	21499679	intron	Glg1 -	chr3L	21500533	intron	Glg1 -	chr3L_10_21495001	chr3L_21495001	RAL-307_125b
2454	chr3L	21498850	21498862	chr3L	21500503	21500518	1360	5	1663	8.5	12.5	10.5	0.4	1668	chr3L	21498850	intron	Glg1 -	chr3L	21499684	intron	Glg1 -	chr3L	21500518	intron	Glg1 -	chr3L_5_21495001	chr3L_21495001	RAL-307_125b
2455	chr3L	21749283	21749318	chr3L	21754493	21754513	Doc	10	5202	10.5	6.5	8.5	1.1	5230	chr3L	21749283	intron	Syn1 -	chr3L	21751898	intron	Syn1 -	chr3L	21754513	intron	Syn1 -	chr3L_10_21750001	chr3L_21750001	RAL-307_125b
2456	chr3L	21749321	21749339	chr3L	21754489	21754546	Doc	7	5198	6.5	5.5	6.0	1.0	5225	chr3L	21749321	intron	Syn1 -	chr3L	21751934	intron	Syn1 -	chr3L	21754546	intron	Syn1 -	chr3L_7_21750001	chr3L_21750001	RAL-307_125b
2470	chr3L	21952406	21952482	chr3L	21953194	21953264	transib1	32	790	10.0	11.0	10.5	2.8	858	chr3L	21952406	intergenic	not near genes	chr3L	21952835	intergenic	not near genes	chr3L	21953264	intergenic	not near genes	chr3L_32_21950001	chr3L_21950001	RAL-307_125b
2474	chr3L	22099639	22099684	chr3L	22105875	22105920	3S18	29	6236	9.0	13.0	11.0	2.4	6281	chr3L	22099639	intergenic	not near genes	chr3L	22102780	intergenic	not near genes	chr3L	22105920	intergenic	not near genes	chr3L_29_22100001	chr3L_22100001	RAL-307_125b
2475	chr3L	22099687	22099696	chr3L	22105863	22105932	3S18	10	6230	7.5	11.0	9.2	1.0	6245	chr3L	22099687	intergenic	not near genes	chr3L	22102810	intergenic	not near genes	chr3L	22105932	intergenic	not near genes	chr3L_10_22100001	chr3L_22100001	RAL-307_125b
2485	chr3L	22555726	22555800	chr3L	22563246	22563281	blood	28	7508	8.0	6.5	7.2	3.4	7555	chr3L	22555726	intergenic	not near genes	chr3L	22559504	intergenic	not near genes	chr3L	22563281	intergenic	not near genes	chr3L_28_22555001	chr3L_22555001	RAL-307_125b
2486	chr3L	22577590	22577616	chr3L	22582420	22582447	Doc	4	4834	10.0	9.5	9.8	0.4	4857	chr3L	22577590	intergenic	not near genes	chr3L	22580018	intergenic	not near genes	chr3L	22582447	3` UTR	CG14459 -	chr3L_4_22580001	chr3L_22580001	RAL-307_125b
2487	chr3L	22577627	22577639	chr3L	22582415	22582477	Doc	5	4825	6.5	9.0	7.8	0.6	4850	chr3L	22577627	intergenic	not near genes	chr3L	22580052	intergenic	not near genes	chr3L	22582477	3` UTR	CG14459 -	chr3L_5_22580001	chr3L_22580001	RAL-307_125b
2490	chr3L	22617144	22617219	chr3L	22624646	22624704	blood	27	7497	8.5	12.5	10.5	2.3	7560	chr3L	22617144	intron	CG14459 -	chr3L	22620924	intron	CG14459 -	chr3L	22624704	intron	CG14459 -	chr3L_27_22620001	chr3L_22620001	RAL-307_125b
2496	chr3L	22865944	22866004	chr3L	22867127	22867187	Doc	40	1182	18.0	18.0	18.0	2.1	1243	chr3L	22865944	exon	CG33170 +	chr3L	22866566	intron	CG33170 +	chr3L	22867187	intron	CG33170 +	chr3L_40_22865001	chr3L_22865001	RAL-307_125b
2502	chr3L	22982428	22982478	chr3L	22982876	22982926	INE-1	24	447	12.5	14.5	13.5	1.7	498	chr3L	22982428	intergenic	not near genes	chr3L	22982677	intergenic	not near genes	chr3L	22982926	intergenic	not near genes	chr3L_24_22980001	chr3L_22980001	RAL-307_125b
2503	chr3L	22989820	22989889	chr3L	22996844	22996882	297	46	7021	10.0	11.0	10.5	4.0	7062	chr3L	22989820	intergenic	not near genes	chr3L	22993351	intergenic	not near genes	chr3L	22996882	intergenic	not near genes	chr3L_46_22990001	chr3L_22990001	RAL-307_125b
2505	chr3L	23042183	23042249	chr3L	23048986	23049052	gypsy6	17	6800	10.0	8.5	9.2	1.7	6869	chr3L	23042183	intergenic	not near genes	chr3L	23045618	intergenic	not near genes	chr3L	23049052	intergenic	not near genes	chr3L_17_23045001	chr3L_23045001	RAL-307_125b
2507	chr3L	23165871	23165902	chr3L	23173367	23173398	Quasimodo	7	7493	12.0	9.0	10.5	0.6	7527	chr3L	23165871	intergenic	not near genes	chr3L	23169634	intergenic	not near genes	chr3L	23173398	intergenic	not near genes	chr3L_7_23165001	chr3L_23165001	RAL-307_125b
2512	chr3L	23665486	23665527	chr3L	23665626	23665667	gypsy8	14	140	47.5	42.5	45.0	0.3	181	chr3L	23665486	intron	AGO3 +	chr3L	23665576	intron	AGO3 +	chr3L	23665667	intron	AGO3 +	chr3L_14_23665001	chr3L_23665001	RAL-307_125b
2513	chr3L	23848805	23848827	chr3L	23849678	23849701	R1A1-element	5	873	8.5	8.5	8.5	0.5	896	chr3L	23848805	intron	CG40470 -	chr3L	23849253	intron	CG40470 -	chr3L	23849701	intron	CG40470 -	chr3L_5_23845001	chr3L_23845001	RAL-307_125b
2515	chr3L	24012367	24012398	chr3L	24020758	24020789	roo	11	8390	15.0	12.0	13.5	0.8	8422	chr3L	24012367	intergenic	not near genes	chr3L	24016578	intergenic	not near genes	chr3L	24020789	intergenic	not near genes	chr3L_11_24015001	chr3L_24015001	RAL-307_125b
2516	chr3L	24012401	24012429	chr3L	24020752	24020820	roo	13	8386	8.0	11.0	9.5	1.2	8419	chr3L	24012401	intergenic	not near genes	chr3L	24016610	intergenic	not near genes	chr3L	24020820	intergenic	not near genes	chr3L_13_24015001	chr3L_24015001	RAL-307_125b
2518	chr3L	24168766	24168822	chr3L	24176128	24176171	ZAM	13	7358	6.5	6.0	6.2	1.8	7405	chr3L	24168766	intron	Snap25 +	chr3L	24172468	intron	Snap25 +	chr3L	24176171	intron	Snap25 +	chr3L_13_24170001	chr3L_24170001	RAL-307_125b
2519	chr3L	24791849	24791911	chr3L	24796678	24796702	Doc	15	4825	11.5	6.5	9.0	1.5	4853	chr3L	24791849	intergenic	not near genes	chr3L	24794276	intergenic	not near genes	chr3L	24796702	intergenic	not near genes	chr3L_15_24790001	chr3L_24790001	RAL-307_125b
2526	chr3L	25628462	25628499	chr3L	25633283	25633317	F-element	12	4816	12.0	7.5	9.8	1.1	4855	chr3L	25628462	intron	CG41343 -	chr3L	25630890	intron	CG41343 -	chr3L	25633317	intron	CG41343 -	chr3L_12_25630001	chr3L_25630001	RAL-307_125b
2527	chr3L	25628500	25628520	chr3L	25633276	25633341	F-element	12	4817	7.5	7.0	7.2	1.5	4841	chr3L	25628500	intron	CG41343 -	chr3L	25630920	intron	CG41343 -	chr3L	25633341	intron	CG41343 -	chr3L_12_25630001	chr3L_25630001	RAL-307_125b
2531	chr3L	23941232	23941238	chr3L	26882296	26882297	1360	7	2941060	39.0	12.0	25.5	0.3	2941065	chr3L	23941232	intron	CG40470 -	chr3L	25411764	intergenic	not near genes	chr3L	26882297	intergenic	not near genes	chr3L_7_25410001	chr3L_25410001	RAL-307_125b
2532	chr3L	23941239	23941245	chr3L	26882298	26882300	1360	8	2941058	39.0	11.0	25.0	0.3	2941061	chr3L	23941239	intron	CG40470 -	chr3L	25411770	intergenic	not near genes	chr3L	26882300	intergenic	not near genes	chr3L_8_25410001	chr3L_25410001	RAL-307_125b
2533	chr3L	27356070	27356097	chr3L	27357319	27357346	1360	15	1249	10.5	1.5	6.0	2.1	1276	chr3L	27356070	intron	Dbp80 +	chr3L	27356708	intron	Dbp80 +	chr3L	27357346	intron	Dbp80 +	chr3L_15_27355001	chr3L_27355001	RAL-307_125b
2534	chr3L	27356098	27356118	chr3L	27357315	27357338	1360	5	1234	9.0	1.5	5.2	0.8	1240	chr3L	27356098	intron	Dbp80 +	chr3L	27356718	intron	Dbp80 +	chr3L	27357338	intron	Dbp80 +	chr3L_5_27355001	chr3L_27355001	RAL-307_125b
2544	chr3L	27980647	27980725	chr3L	27985495	27985573	Doc	31	4848	8.0	7.5	7.8	3.5	4926	chr3L	27980647	intron	CG17514 -	chr3L	27983110	intron	CG17514 -	chr3L	27985573	intron	CG17514 -	chr3L_31_27980001	chr3L_27980001	RAL-307_125b
2545	chr3R	97129	97132	chr3R	98954	98957	1360	5	1824	20.5	0.0	10.2	0.4	1828	chr3R	97129	intergenic	not near genes	chr3R	98043	intergenic	not near genes	chr3R	98957	intergenic	not near genes	chr3R_5_95001	chr3R_95001	RAL-307_125b
2556	chr3R	4078222	4078239	chr3R	4079897	4079914	INE-1	5	1675	46.5	62.0	54.2	0.1	1692	chr3R	4078222	5` UTR	CG42402 +	chr3R	4079068	intron	CG42402 +	chr3R	4079914	intron	CG42402 +	chr3R_5_4075001	chr3R_4075001	RAL-307_125b
2557	chr3R	4105004	4105051	chr3R	4110258	4110305	copia	8	5249	9.5	7.5	8.5	0.8	5301	chr3R	4105004	intergenic	not near genes	chr3R	4107654	intergenic	not near genes	chr3R	4110305	intergenic	not near genes	chr3R_8_4105001	chr3R_4105001	RAL-307_125b
2558	chr3R	4206027	4206093	chr3R	4211652	4211718	mdg3	34	5623	14.5	7.5	11.0	2.8	5691	chr3R	4206027	intron	CG14636 -	chr3R	4208872	intron	CG14636 -	chr3R	4211718	intron	CG14636 -	chr3R_34_4205001	chr3R_4205001	RAL-307_125b
2562	chr3R	4366713	4366782	chr3R	4375146	4375213	roo	35	8431	10.5	8.5	9.5	3.3	8500	chr3R	4366713	3` UTR	CG1090 +	chr3R	4370963	intergenic	not near genes	chr3R	4375213	5` UTR	CR44922 +	chr3R_35_4370001	chr3R_4370001	RAL-307_125b
2564	chr3R	4408374	4408436	chr3R	4412728	4412765	Juan	30	4353	9.5	11.5	10.5	2.6	4391	chr3R	4408374	intron	CG32944 -	chr3R	4410570	intron	CG32944 -	chr3R	4412765	intron	CG32944 -	chr3R_30_4410001	chr3R_4410001	RAL-307_125b
2566	chr3R	4538831	4538906	chr3R	4540141	4540186	1360	4	1302	5.0	11.0	8.0	0.4	1355	chr3R	4538831	intron	CG34357 -	chr3R	4539508	intron	CG34357 -	chr3R	4540186	intron	CG34357 -	chr3R_4_4535001	chr3R_4535001	RAL-307_125b
2567	chr3R	4609506	4609578	chr3R	4610720	4610751	1360	29	1211	12.0	20.0	16.0	1.7	1245	chr3R	4609506	intergenic	not near genes	chr3R	4610128	intergenic	not near genes	chr3R	4610751	intergenic	not near genes	chr3R_29_4610001	chr3R_4610001	RAL-307_125b
2571	chr3R	4753209	4753224	chr3R	4757562	4757567	F-element	6	4351	18.0	8.0	13.0	0.4	4358	chr3R	4753209	intron,intron	atms +,CG44098 -	chr3R	4755388	intron,intron	atms +,CG44098 -	chr3R	4757567	intron,exon	atms +,CG44098 -	chr3R_6_4755001	chr3R_4755001	RAL-307_125b
2572	chr3R	4753225	4753254	chr3R	4757548	4757607	F-element	9	4348	12.0	7.0	9.5	0.9	4382	chr3R	4753225	intron,intron	atms +,CG44098 -	chr3R	4755416	intron,intron	atms +,CG44098 -	chr3R	4757607	intron,exon	atms +,CG44098 -	chr3R_9_4755001	chr3R_4755001	RAL-307_125b
2576	chr3R	4887446	4887505	chr3R	4894872	4894932	rover	11	7423	6.0	7.5	6.8	1.4	7486	chr3R	4887446	intergenic	not near genes	chr3R	4891189	intergenic	not near genes	chr3R	4894932	intergenic	not near genes	chr3R_11_4890001	chr3R_4890001	RAL-307_125b
2582	chr3R	5045800	5045817	chr3R	5052952	5052969	HMS-Beagle	6	7152	19.0	8.0	13.5	0.4	7169	chr3R	5045800	3` UTR	CR43635 -	chr3R	5049384	intergenic	not near genes	chr3R	5052969	intergenic	CR45588 -	chr3R_6_5045001	chr3R_5045001	RAL-307_125b
2583	chr3R	5045822	5045839	chr3R	5052974	5052991	HMS-Beagle	5	7152	15.5	12.0	13.8	0.3	7169	chr3R	5045822	3` UTR	CR43635 -	chr3R	5049406	intergenic	not near genes	chr3R	5052991	intergenic	CR45588 -	chr3R_5_5045001	chr3R_5045001	RAL-307_125b
2584	chr3R	5045843	5045871	chr3R	5052963	5053023	HMS-Beagle	16	7150	10.0	10.0	10.0	1.5	7180	chr3R	5045843	intron	CR43635 -	chr3R	5049433	intergenic	not near genes	chr3R	5053023	intergenic	CR45588 -	chr3R_16_5045001	chr3R_5045001	RAL-307_125b
2585	chr3R	5067936	5067996	chr3R	5073503	5073563	mdg3	37	5565	15.5	18.5	17.0	2.1	5627	chr3R	5067936	intergenic	not near genes	chr3R	5070750	intergenic	not near genes	chr3R	5073563	intergenic	not near genes	chr3R_37_5070001	chr3R_5070001	RAL-307_125b
2593	chr3R	5338236	5338265	chr3R	5343614	5343643	Rt1c	19	5377	26.0	5.0	15.5	1.2	5407	chr3R	5338236	intron	mtd -	chr3R	5340940	intron	mtd -	chr3R	5343643	intron	mtd -	chr3R_19_5340001	chr3R_5340001	RAL-307_125b
2594	chr3R	5338267	5338306	chr3R	5343612	5343665	Rt1c	23	5370	15.0	5.0	10.0	2.1	5398	chr3R	5338267	intron	mtd -	chr3R	5340966	intron	mtd -	chr3R	5343665	intron	mtd -	chr3R_23_5340001	chr3R_5340001	RAL-307_125b
2596	chr3R	5445927	5445937	chr3R	5452437	5452447	Burdock	5	6510	34.0	12.0	23.0	0.2	6520	chr3R	5445927	intron	CG14669 +	chr3R	5449187	intron	CG14669 +	chr3R	5452447	intron	CG14669 +	chr3R_5_5445001	chr3R_5445001	RAL-307_125b
2597	chr3R	5445938	5445985	chr3R	5452433	5452495	Burdock	35	6507	17.5	11.5	14.5	2.3	6557	chr3R	5445938	intron	CG14669 +	chr3R	5449216	intron	CG14669 +	chr3R	5452495	intron	CG14669 +	chr3R_35_5445001	chr3R_5445001	RAL-307_125b
2603	chr3R	5745975	5745999	chr3R	5746266	5746290	pogo	8	291	13.5	8.0	10.8	0.7	315	chr3R	5745975	3` UTR	Madm +	chr3R	5746132	3` UTR	Madm +	chr3R	5746290	3` UTR	Madm +	chr3R_8_5745001	chr3R_5745001	RAL-307_125b
2604	chr3R	5746001	5746039	chr3R	5746256	5746278	pogo	15	281	7.0	6.5	6.8	1.9	277	chr3R	5746001	3` UTR	Madm +	chr3R	5746140	3` UTR	Madm +	chr3R	5746278	3` UTR	Madm +	chr3R_15_5745001	chr3R_5745001	RAL-307_125b
2605	chr3R	5746972	5747036	chr3R	5753213	5753277	diver	30	6240	16.5	13.0	14.8	1.9	6305	chr3R	5746972	intergenic	Madm +	chr3R	5750124	intergenic	not near genes	chr3R	5753277	intergenic	CG2091 -	chr3R_30_5750001	chr3R_5750001	RAL-307_125b
2607	chr3R	5809065	5809139	chr3R	5809355	5809430	pogo	38	290	7.5	9.0	8.2	4.1	365	chr3R	5809065	3` UTR	CG11000 +	chr3R	5809248	3` UTR	CG11000 +	chr3R	5809430	3` UTR	CG11000 +	chr3R_38_5805001	chr3R_5805001	RAL-307_125b
2608	chr3R	5822345	5822405	chr3R	5823562	5823622	1360	33	1216	6.0	11.0	8.5	3.5	1277	chr3R	5822345	3` UTR	CG2023 -	chr3R	5822984	3` UTR	CG2023 -	chr3R	5823622	3` UTR	CG2023 -	chr3R_33_5820001	chr3R_5820001	RAL-307_125b
2612	chr3R	5927523	5927545	chr3R	5927813	5927834	pogo	5	290	7.0	10.0	8.5	0.5	311	chr3R	5927523	intron	CG34113 -	chr3R	5927678	intron	CG34113 -	chr3R	5927834	intron	CG34113 -	chr3R_5_5925001	chr3R_5925001	RAL-307_125b
2613	chr3R	5927558	5927583	chr3R	5927811	5927873	pogo	8	269	5.5	9.5	7.5	0.9	315	chr3R	5927558	intron	CG34113 -	chr3R	5927716	intron	CG34113 -	chr3R	5927873	intron	CG34113 -	chr3R_8_5925001	chr3R_5925001	RAL-307_125b
2617	chr3R	6015931	6015986	chr3R	6024455	6024502	Tirant	12	8515	6.5	8.5	7.5	1.4	8571	chr3R	6015931	intergenic	not near genes	chr3R	6020216	intergenic	not near genes	chr3R	6024502	intergenic	not near genes	chr3R_12_6020001	chr3R_6020001	RAL-307_125b
2621	chr3R	6121134	6121180	chr3R	6121369	6121448	BS	16	248	1.0	10.0	5.5	2.5	314	chr3R	6121134	intergenic	not near genes	chr3R	6121291	intergenic	not near genes	chr3R	6121448	intergenic	not near genes	chr3R_16_6120001	chr3R_6120001	RAL-307_125b
2622	chr3R	6158498	6158539	chr3R	6167091	6167117	Tirant	18	8614	9.0	4.5	6.8	2.3	8619	chr3R	6158498	intergenic	not near genes	chr3R	6162808	intergenic	not near genes	chr3R	6167117	intergenic	CG1077 +	chr3R_18_6160001	chr3R_6160001	RAL-307_125b
2623	chr3R	6175128	6175195	chr3R	6182449	6182517	HMS-Beagle2	32	7320	6.5	10.0	8.2	3.5	7389	chr3R	6175128	intergenic	Osi1 +	chr3R	6178822	intron	CR45194 +	chr3R	6182517	intergenic	CR45194 +	chr3R_32_6175001	chr3R_6175001	RAL-307_125b
2631	chr3R	6509989	6510046	chr3R	6515114	6515177	jockey	22	5128	8.0	12.5	10.2	2.0	5188	chr3R	6509989	intergenic	not near genes	chr3R	6512583	intergenic	not near genes	chr3R	6515177	intergenic	not near genes	chr3R_22_6510001	chr3R_6510001	RAL-307_125b
2643	chr3R	6737462	6737480	chr3R	6739299	6739309	Doc	4	1834	10.5	8.0	9.2	0.4	1847	chr3R	6737462	intron	pb -	chr3R	6738386	intron	pb -	chr3R	6739309	intron	pb -	chr3R_4_6735001	chr3R_6735001	RAL-307_125b
2644	chr3R	6737484	6737526	chr3R	6739291	6739363	Doc	17	1826	5.5	6.5	6.0	2.4	1879	chr3R	6737484	intron	pb -	chr3R	6738424	intron	pb -	chr3R	6739363	intron	pb -	chr3R_17_6735001	chr3R_6735001	RAL-307_125b
2670	chr3R	7641018	7641026	chr3R	7642632	7642640	hobo	4	1614	23.0	14.5	18.8	0.2	1622	chr3R	7641018	intergenic	not near genes	chr3R	7641829	intergenic	not near genes	chr3R	7642640	intergenic	not near genes	chr3R_4_7640001	chr3R_7640001	RAL-307_125b
2671	chr3R	7641028	7641055	chr3R	7642630	7642658	hobo	14	1609	16.5	14.0	15.2	0.9	1630	chr3R	7641028	intergenic	not near genes	chr3R	7641843	intergenic	not near genes	chr3R	7642658	intergenic	not near genes	chr3R_14_7640001	chr3R_7640001	RAL-307_125b
2672	chr3R	7641056	7641090	chr3R	7642623	7642645	hobo	27	1604	8.0	10.5	9.2	2.6	1589	chr3R	7641056	intergenic	not near genes	chr3R	7641850	intergenic	not near genes	chr3R	7642645	intergenic	not near genes	chr3R_27_7640001	chr3R_7640001	RAL-307_125b
2674	chr3R	7729421	7729488	chr3R	7737409	7737476	Stalker2	47	7986	10.0	10.0	10.0	4.3	8055	chr3R	7729421	intergenic	not near genes	chr3R	7733448	intergenic	not near genes	chr3R	7737476	intergenic	not near genes	chr3R_47_7730001	chr3R_7730001	RAL-307_125b
2681	chr3R	7973277	7973334	chr3R	7974389	7974438	1360	28	1110	15.0	12.5	13.8	1.9	1161	chr3R	7973277	intergenic	not near genes	chr3R	7973858	intergenic	not near genes	chr3R	7974438	3` UTR	CD98hc -	chr3R_28_7970001	chr3R_7970001	RAL-307_125b
2685	chr3R	8090517	8090561	chr3R	8094044	8094074	297	24	3524	13.0	12.5	12.8	1.7	3557	chr3R	8090517	intergenic	CR44330 +	chr3R	8092296	intergenic	not near genes	chr3R	8094074	intergenic	CG7900 +	chr3R_24_8090001	chr3R_8090001	RAL-307_125b
2686	chr3R	8094367	8094397	chr3R	8099722	8099752	Transpac	15	5354	12.5	12.0	12.2	1.1	5385	chr3R	8094367	intron	CG7900 +	chr3R	8097060	intron	CG7900 +	chr3R	8099752	intron	CG7900 +	chr3R_15_8095001	chr3R_8095001	RAL-307_125b
2687	chr3R	8094400	8094422	chr3R	8099712	8099777	Transpac	13	5350	8.5	9.5	9.0	1.3	5377	chr3R	8094400	intron	CG7900 +	chr3R	8097088	intron	CG7900 +	chr3R	8099777	intron	CG7900 +	chr3R_13_8095001	chr3R_8095001	RAL-307_125b
2688	chr3R	8101731	8101750	chr3R	8104850	8104884	G2	7	3131	11.5	12.0	11.8	0.5	3153	chr3R	8101731	exon	CG7900 +	chr3R	8103308	intron	CG7900 +	chr3R	8104884	3` UTR	CG7900 +	chr3R_7_8100001	chr3R_8100001	RAL-307_125b
2689	chr3R	8101751	8101770	chr3R	8104849	8104904	G2	13	3125	11.0	11.5	11.2	1.1	3153	chr3R	8101751	exon	CG7900 +	chr3R	8103328	intron	CG7900 +	chr3R	8104904	3` UTR	CG7900 +	chr3R_13_8100001	chr3R_8100001	RAL-307_125b
2693	chr3R	8207527	8207568	chr3R	8208406	8208453	F-element	23	885	13.0	12.5	12.8	1.7	926	chr3R	8207527	intergenic	not near genes	chr3R	8207990	intergenic	not near genes	chr3R	8208453	intergenic	not near genes	chr3R_23_8205001	chr3R_8205001	RAL-307_125b
2694	chr3R	8207570	8207585	chr3R	8208403	8208447	F-element	8	874	7.5	11.5	9.5	0.8	877	chr3R	8207570	intergenic	not near genes	chr3R	8208008	intergenic	not near genes	chr3R	8208447	intergenic	not near genes	chr3R_8_8205001	chr3R_8205001	RAL-307_125b
2697	chr3R	8402972	8403026	chr3R	8412182	8412236	roo	14	9212	8.5	9.0	8.8	1.4	9264	chr3R	8402972	intron	CG45263 -	chr3R	8407604	intron	CG45263 -	chr3R	8412236	intron	CG45263 -	chr3R_14_8405001	chr3R_8405001	RAL-307_125b
2704	chr3R	8570447	8570506	chr3R	8575133	8575191	HMS-Beagle	19	4679	6.5	14.0	10.2	1.7	4744	chr3R	8570447	intergenic	not near genes	chr3R	8572819	intergenic	not near genes	chr3R	8575191	intergenic	not near genes	chr3R_19_8570001	chr3R_8570001	RAL-307_125b
2707	chr3R	8601732	8601793	chr3R	8610935	8610966	roo	24	9194	6.5	9.5	8.0	2.7	9234	chr3R	8601732	intron	5-HT2B +	chr3R	8606349	intron	5-HT2B +	chr3R	8610966	intron	5-HT2B +	chr3R_24_8605001	chr3R_8605001	RAL-307_125b
2712	chr3R	8707313	8707338	chr3R	8709804	8709823	jockey	8	2488	13.0	6.0	9.5	0.8	2510	chr3R	8707313	intergenic	not near genes	chr3R	8708568	intergenic	not near genes	chr3R	8709823	intergenic	not near genes	chr3R_8_8705001	chr3R_8705001	RAL-307_125b
2713	chr3R	8707346	8707372	chr3R	8709801	8709846	jockey	9	2479	7.5	5.0	6.2	1.2	2500	chr3R	8707346	intergenic	not near genes	chr3R	8708596	intergenic	not near genes	chr3R	8709846	intergenic	not near genes	chr3R_9_8705001	chr3R_8705001	RAL-307_125b
2717	chr3R	8894830	8894896	chr3R	8896036	8896102	1360	41	1202	12.5	15.5	14.0	2.7	1272	chr3R	8894830	intron	pyd -	chr3R	8895466	intron	pyd -	chr3R	8896102	intron	pyd -	chr3R_41_8895001	chr3R_8895001	RAL-307_125b
2718	chr3R	8898173	8898211	chr3R	8913803	8913841	297	9	15628	12.0	1.5	6.8	1.2	15668	chr3R	8898173	intron	pyd -	chr3R	8906007	intron	pyd -	chr3R	8913841	intron	pyd -	chr3R_9_8905001	chr3R_8905001	RAL-307_125b
2727	chr3R	9278753	9278800	chr3R	9284054	9284109	Rt1a	24	5305	16.0	13.5	14.8	1.5	5356	chr3R	9278753	intergenic	not near genes	chr3R	9281431	intergenic	not near genes	chr3R	9284109	intergenic	not near genes	chr3R_24_9280001	chr3R_9280001	RAL-307_125b
2729	chr3R	9319535	9319600	chr3R	9320020	9320087	jockey	34	481	12.0	11.5	11.8	2.7	552	chr3R	9319535	intron	CG8861 -	chr3R	9319811	intron	CG8861 -	chr3R	9320087	intron	CG8861 -	chr3R_34_9315001	chr3R_9315001	RAL-307_125b
2730	chr3R	9361804	9361833	chr3R	9362095	9362124	pogo	15	291	7.5	19.0	13.2	1.1	320	chr3R	9361804	3` UTR	CG45050 +	chr3R	9361964	3` UTR	CG45050 +	chr3R	9362124	3` UTR	CG45050 +	chr3R_15_9360001	chr3R_9360001	RAL-307_125b
2741	chr3R	10196907	10196928	chr3R	10202944	10202965	297	9	6035	16.5	12.0	14.2	0.6	6058	chr3R	10196907	exon	Syn +	chr3R	10199936	intron	Syn +	chr3R	10202965	intron	Syn +	chr3R_9_10195001	chr3R_10195001	RAL-307_125b
2742	chr3R	10231739	10231813	chr3R	10237366	10237434	mdg3	39	5624	10.0	11.0	10.5	3.4	5695	chr3R	10231739	intron	CG42795 +	chr3R	10234586	intron	CG42795 +	chr3R	10237434	intron	CG42795 +	chr3R_39_10230001	chr3R_10230001	RAL-307_125b
2743	chr3R	10255339	10255383	chr3R	10260829	10260873	I-element	26	5488	18.0	14.0	16.0	1.5	5534	chr3R	10255339	intergenic	Sirt6 -,CG3999 +	chr3R	10258106	intron	Sirt6 -	chr3R	10260873	exon	Sirt6 -	chr3R_26_10255001	chr3R_10255001	RAL-307_125b
2762	chr3R	10957821	10957861	chr3R	10963260	10963284	Rt1c	10	5431	9.0	4.5	6.8	1.3	5463	chr3R	10957821	intergenic	not near genes	chr3R	10960552	intergenic	not near genes	chr3R	10963284	intergenic	not near genes	chr3R_10_10960001	chr3R_10960001	RAL-307_125b
2763	chr3R	10957863	10957882	chr3R	10963258	10963278	Rt1c	6	5418	5.5	4.5	5.0	1.0	5415	chr3R	10957863	intergenic	not near genes	chr3R	10960570	intergenic	not near genes	chr3R	10963278	intergenic	not near genes	chr3R_6_10960001	chr3R_10960001	RAL-307_125b
2768	chr3R	11065542	11065616	chr3R	11071244	11071246	297	4	5684	4.0	7.0	5.5	0.6	5704	chr3R	11065542	intergenic	not near genes	chr3R	11068394	intergenic	not near genes	chr3R	11071246	intergenic	not near genes	chr3R_4_11065001	chr3R_11065001	RAL-307_125b
2775	chr3R	11247200	11247211	chr3R	11247331	11247333	INE-1	6	130	29.0	6.5	17.8	0.3	133	chr3R	11247200	intergenic	CG5214 +,CR43283 -	chr3R	11247266	intergenic	CR43283 -,CG5214 +	chr3R	11247333	intergenic	CR43283 -,CG5214 +	chr3R_6_11245001	chr3R_11245001	RAL-307_125b
2776	chr3R	11247212	11247228	chr3R	11247328	11247359	INE-1	12	128	25.0	6.0	15.5	0.7	147	chr3R	11247212	intergenic	CG5214 +,CR43283 -	chr3R	11247286	intergenic	CR43283 -,CG5214 +	chr3R	11247359	intergenic	CR43283 -,CG5214 +	chr3R_12_11245001	chr3R_11245001	RAL-307_125b
2779	chr3R	11379192	11379253	chr3R	11388397	11388406	roo	20	9196	16.0	13.5	14.8	1.3	9214	chr3R	11379192	intron	pros +	chr3R	11383799	intron	pros +	chr3R	11388406	intron	pros +	chr3R_20_11380001	chr3R_11380001	RAL-307_125b
2795	chr3R	11841027	11841083	chr3R	11846257	11846324	BS	21	5228	7.5	12.5	10.0	1.9	5297	chr3R	11841027	intron	CG6959 -	chr3R	11843676	intron	CG6959 -	chr3R	11846324	intron	CG6959 -	chr3R_21_11840001	chr3R_11840001	RAL-307_125b
2803	chr3R	12022838	12022848	chr3R	12025065	12025075	pogo	10	2227	20.0	11.0	15.5	0.6	2237	chr3R	12022838	intergenic	not near genes	chr3R	12023956	intergenic	not near genes	chr3R	12025075	intergenic	not near genes	chr3R_10_12020001	chr3R_12020001	RAL-307_125b
2804	chr3R	12022850	12022910	chr3R	12025062	12025119	pogo	29	2224	8.0	10.5	9.2	2.8	2269	chr3R	12022850	intergenic	not near genes	chr3R	12023984	intergenic	not near genes	chr3R	12025119	intergenic	not near genes	chr3R_29_12020001	chr3R_12020001	RAL-307_125b
2829	chr3R	12864529	12864581	chr3R	12865064	12865116	roo	7	535	1.5	5.0	3.2	1.7	587	chr3R	12864529	intergenic	not near genes	chr3R	12864822	intergenic	not near genes	chr3R	12865116	intergenic	not near genes	chr3R_7_12860001	chr3R_12860001	RAL-307_125b
2831	chr3R	12920116	12920136	chr3R	12925364	12925389	copia	9	5251	18.0	10.0	14.0	0.6	5273	chr3R	12920116	intron	beat-Vb +	chr3R	12922752	intron	beat-Vb +	chr3R	12925389	intron	beat-Vb +	chr3R_9_12920001	chr3R_12920001	RAL-307_125b
2832	chr3R	12920138	12920178	chr3R	12925361	12925412	copia	19	5245	7.5	9.5	8.5	2.0	5274	chr3R	12920138	intron	beat-Vb +	chr3R	12922775	intron	beat-Vb +	chr3R	12925412	intron	beat-Vb +	chr3R_19_12920001	chr3R_12920001	RAL-307_125b
2839	chr3R	13135785	13135847	chr3R	13138010	13138072	pogo	25	2225	6.5	6.0	6.2	3.5	2287	chr3R	13135785	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13136928	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13138072	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R_25_13135001	chr3R_13135001	RAL-307_125b
2840	chr3R	13142994	13143008	chr3R	13148620	13148634	mdg3	5	5625	17.0	10.5	13.8	0.3	5640	chr3R	13142994	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13145814	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13148634	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R_5_13145001	chr3R_13145001	RAL-307_125b
2841	chr3R	13143011	13143066	chr3R	13148617	13148662	mdg3	20	5614	5.5	10.5	8.0	2.2	5651	chr3R	13143011	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13145836	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13148662	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R_20_13145001	chr3R_13145001	RAL-307_125b
2845	chr3R	13311585	13311640	chr3R	13318881	13318941	Doc	10	7300	20.5	3.0	11.8	0.8	7356	chr3R	13311585	exon	CG32473 +	chr3R	13315263	intergenic	not near genes	chr3R	13318941	intergenic	CG45080 -	chr3R_10_13315001	chr3R_13315001	RAL-307_125b
2854	chr3R	13517218	13517255	chr3R	13520085	13520121	jockey	12	2866	8.0	4.0	6.0	1.7	2903	chr3R	13517218	intergenic	not near genes	chr3R	13518670	intergenic	not near genes	chr3R	13520121	intergenic	not near genes	chr3R_12_13515001	chr3R_13515001	RAL-307_125b
2892	chr3R	14180767	14180831	chr3R	14185582	14185646	F-element	33	4815	11.5	10.0	10.8	2.8	4879	chr3R	14180767	intron	Dop1R1 -	chr3R	14183206	intron	Dop1R1 -	chr3R	14185646	intron	Dop1R1 -	chr3R_33_14180001	chr3R_14180001	RAL-307_125b
2894	chr3R	14194441	14194457	chr3R	14203614	14203636	roo	9	9178	8.5	0.5	4.5	1.6	9195	chr3R	14194441	intron	Dop1R1 -	chr3R	14199038	intron	Dop1R1 -	chr3R	14203636	intron	Dop1R1 -	chr3R_9_14195001	chr3R_14195001	RAL-307_125b
2895	chr3R	14246359	14246366	chr3R	14247905	14247912	jockey	4	1546	12.0	11.5	11.8	0.3	1553	chr3R	14246359	intergenic	not near genes	chr3R	14247136	intergenic	not near genes	chr3R	14247912	intergenic	not near genes	chr3R_4_14245001	chr3R_14245001	RAL-307_125b
2896	chr3R	14246371	14246407	chr3R	14247891	14247946	jockey	10	1533	7.0	7.0	7.0	1.2	1575	chr3R	14246371	intergenic	not near genes	chr3R	14247158	intergenic	not near genes	chr3R	14247946	intergenic	not near genes	chr3R_10_14245001	chr3R_14245001	RAL-307_125b
2919	chr3R	15041386	15041422	chr3R	15045204	15045240	Doc	9	3818	11.5	6.0	8.8	0.9	3854	chr3R	15041386	intergenic	not near genes	chr3R	15043313	intergenic	not near genes	chr3R	15045240	intergenic	not near genes	chr3R_9_15040001	chr3R_15040001	RAL-307_125b
2920	chr3R	15041424	15041445	chr3R	15045242	15045263	Doc	6	3818	7.0	8.0	7.5	0.7	3839	chr3R	15041424	intergenic	not near genes	chr3R	15043344	intergenic	not near genes	chr3R	15045263	intergenic	not near genes	chr3R_6_15040001	chr3R_15040001	RAL-307_125b
2922	chr3R	15059270	15059480	chr3R	15059548	15059617	BS	16	216	0.0	9.0	4.5	2.9	347	chr3R	15059270	intron	dpr9 -	chr3R	15059444	intron	dpr9 -	chr3R	15059617	intron	dpr9 -	chr3R_16_15055001	chr3R_15055001	RAL-307_125b
2924	chr3R	15079764	15079829	chr3R	15080055	15080120	pogo	30	287	11.5	7.0	9.2	2.9	356	chr3R	15079764	3` UTR	CG6966 -	chr3R	15079942	3` UTR	CG6966 -	chr3R	15080120	3` UTR	CG6966 -	chr3R_30_15075001	chr3R_15075001	RAL-307_125b
2926	chr3R	15102450	15102455	chr3R	15109757	15109762	412	4	7307	29.0	6.5	17.8	0.2	7312	chr3R	15102450	intron	CG42788 -	chr3R	15106106	intron	CG42788 -	chr3R	15109762	intron	CG42788 -	chr3R_4_15105001	chr3R_15105001	RAL-307_125b
2927	chr3R	15102457	15102511	chr3R	15109752	15109818	412	34	7306	10.0	6.0	8.0	3.8	7361	chr3R	15102457	intron	CG42788 -	chr3R	15106138	intron	CG42788 -	chr3R	15109818	intron	CG42788 -	chr3R_34_15105001	chr3R_15105001	RAL-307_125b
2929	chr3R	15132032	15132048	chr3R	15135131	15135157	Juan	18	3108	28.5	24.5	26.5	0.7	3125	chr3R	15132032	intergenic	CG42788 -	chr3R	15133594	intergenic	not near genes	chr3R	15135157	3` UTR	CG6912 -	chr3R_18_15130001	chr3R_15130001	RAL-307_125b
2930	chr3R	15132049	15132078	chr3R	15135124	15135135	Juan	26	3106	16.0	21.0	18.5	1.3	3086	chr3R	15132049	intergenic	CG42788 -	chr3R	15133592	intergenic	not near genes	chr3R	15135135	intergenic	CG6912 -	chr3R_26_15130001	chr3R_15130001	RAL-307_125b
2932	chr3R	15162499	15162561	chr3R	15167317	15167379	F-element	21	4816	16.5	11.5	14.0	1.4	4880	chr3R	15162499	intron	Gyc88E +	chr3R	15164939	intron	Gyc88E +	chr3R	15167379	intron	Gyc88E +	chr3R_21_15160001	chr3R_15160001	RAL-307_125b
2938	chr3R	15601131	15601189	chr3R	15608698	15608761	412	32	7568	9.0	10.5	9.8	3.0	7630	chr3R	15601131	intergenic	not near genes	chr3R	15604946	intergenic	not near genes	chr3R	15608761	intergenic	not near genes	chr3R_32_15600001	chr3R_15600001	RAL-307_125b
2941	chr3R	15618701	15618763	chr3R	15626225	15626287	blood	28	7521	3.5	8.0	5.8	4.1	7586	chr3R	15618701	intergenic	not near genes	chr3R	15622494	intergenic	not near genes	chr3R	15626287	intergenic	not near genes	chr3R_28_15620001	chr3R_15620001	RAL-307_125b
2949	chr3R	15735193	15735235	chr3R	15739963	15740004	F-element	24	4770	9.0	9.5	9.2	2.4	4811	chr3R	15735193	intergenic	not near genes	chr3R	15737598	intergenic	not near genes	chr3R	15740004	intergenic	not near genes	chr3R_24_15735001	chr3R_15735001	RAL-307_125b
2972	chr3R	16756275	16756353	chr3R	16762516	16762539	diver	11	6234	3.5	3.0	3.2	2.6	6264	chr3R	16756275	intron	bxd -	chr3R	16759407	intron	bxd -	chr3R	16762539	intron	bxd -	chr3R_11_16755001	chr3R_16755001	RAL-307_125b
2982	chr3R	17294620	17294705	chr3R	17295098	17295188	BS	14	479	4.0	1.0	2.5	4.0	568	chr3R	17294620	intergenic	not near genes	chr3R	17294904	intergenic	not near genes	chr3R	17295188	intergenic	not near genes	chr3R_14_17290001	chr3R_17290001	RAL-307_125b
2983	chr3R	17346648	17346706	chr3R	17348261	17348317	F-element	35	1613	14.0	17.0	15.5	2.1	1669	chr3R	17346648	intron	beat-IIa -	chr3R	17347482	intron	beat-IIa -	chr3R	17348317	intron	beat-IIa -	chr3R_35_17345001	chr3R_17345001	RAL-307_125b
2991	chr3R	17509213	17509242	chr3R	17516808	17516825	412	7	7589	7.0	8.5	7.8	0.8	7612	chr3R	17509213	intergenic	not near genes	chr3R	17513019	intergenic	not near genes	chr3R	17516825	intergenic	not near genes	chr3R_7_17510001	chr3R_17510001	RAL-307_125b
2998	chr3R	17591247	17591307	chr3R	17591731	17591793	F-element	17	480	11.0	8.0	9.5	1.6	546	chr3R	17591247	intergenic	not near genes	chr3R	17591520	intergenic	not near genes	chr3R	17591793	intergenic	not near genes	chr3R_17_17590001	chr3R_17590001	RAL-307_125b
2999	chr3R	17638309	17638335	chr3R	17638845	17638871	roo	17	536	0.5	22.0	11.2	1.4	562	chr3R	17638309	intron	CG43175 +	chr3R	17638590	intron	CG43175 +	chr3R	17638871	intron,intron	CG43175 +,CR45222 +	chr3R_17_17635001	chr3R_17635001	RAL-307_125b
3013	chr3R	17925818	17925865	chr3R	17927335	17927342	hobo	10	1512	10.0	14.5	12.2	0.8	1524	chr3R	17925818	intron	cpo +	chr3R	17926580	intron	cpo +	chr3R	17927342	intron	cpo +	chr3R_10_17925001	chr3R_17925001	RAL-307_125b
3018	chr3R	18032734	18032809	chr3R	18040452	18040527	opus	27	7716	0.0	0.0	0.0	27.0	7793	chr3R	18032734	intergenic	not near genes	chr3R	18036630	intergenic	not near genes	chr3R	18040527	intergenic	not near genes	chr3R_27_18035001	chr3R_18035001	RAL-307_125b
3022	chr3R	18061572	18061586	chr3R	18063196	18063210	F-element	8	1623	0.0	8.5	4.2	1.5	1638	chr3R	18061572	intergenic	not near genes	chr3R	18062391	intergenic	not near genes	chr3R	18063210	intergenic	not near genes	chr3R_8_18060001	chr3R_18060001	RAL-307_125b
3037	chr3R	18331806	18331815	chr3R	18333361	18333370	hopper2	6	1555	12.0	0.0	6.0	0.9	1564	chr3R	18331806	3` UTR	CG15803 -	chr3R	18332588	intron	CG15803 -	chr3R	18333370	3` UTR	CG15803 -	chr3R_6_18330001	chr3R_18330001	RAL-307_125b
3047	chr3R	18606453	18606528	chr3R	18610735	18610781	F-element	24	4280	5.5	8.5	7.0	3.0	4328	chr3R	18606453	intron,intron	qin +,CG14304 -	chr3R	18608617	intron,intron	qin +,CG14304 -	chr3R	18610781	intron,intron	qin +,CG14304 -	chr3R_24_18605001	chr3R_18605001	RAL-307_125b
3076	chr3R	19744202	19744211	chr3R	19749496	19749505	Rt1a	5	5294	16.5	15.0	15.8	0.3	5303	chr3R	19744202	intron,intron	GluClalpha +,CR43488 -	chr3R	19746854	intron	GluClalpha +	chr3R	19749505	intron	GluClalpha +	chr3R_5_19745001	chr3R_19745001	RAL-307_125b
3092	chr3R	20109489	20109571	chr3R	20114743	20114795	copia	36	5253	7.0	12.0	9.5	3.4	5306	chr3R	20109489	intergenic	not near genes	chr3R	20112142	intergenic	not near genes	chr3R	20114795	intergenic	CG10887 +	chr3R_36_20110001	chr3R_20110001	RAL-307_125b
3093	chr3R	20156651	20156720	chr3R	20165871	20165908	roo	24	9218	13.0	14.0	13.5	1.7	9257	chr3R	20156651	intergenic	not near genes	chr3R	20161280	intergenic	not near genes	chr3R	20165908	intergenic	not near genes	chr3R_24_20160001	chr3R_20160001	RAL-307_125b
3097	chr3R	20266474	20266531	chr3R	20272995	20273052	Burdock	34	6519	12.0	14.0	13.0	2.4	6578	chr3R	20266474	intron	cic +	chr3R	20269763	intron	cic +	chr3R	20273052	intron	cic +	chr3R_34_20265001	chr3R_20265001	RAL-307_125b
3098	chr3R	20266532	20266543	chr3R	20272993	20273047	Burdock	8	6506	10.0	14.0	12.0	0.6	6515	chr3R	20266532	intron	cic +	chr3R	20269790	intron	cic +	chr3R	20273047	intron	cic +	chr3R_8_20265001	chr3R_20265001	RAL-307_125b
3101	chr3R	20330955	20331023	chr3R	20331491	20331559	roo	38	536	11.0	14.5	12.8	2.8	604	chr3R	20330955	intergenic	Sirt2 +	chr3R	20331257	intergenic	Sirt2 +	chr3R	20331559	intergenic	not near genes	chr3R_38_20330001	chr3R_20330001	RAL-307_125b
3110	chr3R	20506527	20506609	chr3R	20507391	20507442	BS	22	852	0.5	10.5	5.5	3.4	915	chr3R	20506527	intergenic	Or92a +	chr3R	20506984	intergenic	CG4288 -	chr3R	20507442	3` UTR	CG4288 -	chr3R_22_20505001	chr3R_20505001	RAL-307_125b
3111	chr3R	20512964	20513033	chr3R	20515709	20515766	opus	17	2751	7.5	11.5	9.5	1.6	2802	chr3R	20512964	intergenic	CG4288 -	chr3R	20514365	intergenic	not near genes	chr3R	20515766	intergenic	not near genes	chr3R_17_20510001	chr3R_20510001	RAL-307_125b
3125	chr3R	20854452	20854508	chr3R	20859285	20859308	Doc	27	4832	5.0	11.0	8.0	3.0	4856	chr3R	20854452	intron	Ir93a -	chr3R	20856880	intron	Ir93a -	chr3R	20859308	exon	Ir93a -	chr3R_27_20855001	chr3R_20855001	RAL-307_125b
3134	chr3R	21141631	21141670	chr3R	21150162	21150184	Tirant	5	8526	14.5	9.5	12.0	0.4	8553	chr3R	21141631	intron	SNF4Agamma +	chr3R	21145908	intron	SNF4Agamma +	chr3R	21150184	intron	SNF4Agamma +	chr3R_5_21145001	chr3R_21145001	RAL-307_125b
3135	chr3R	21141676	21141706	chr3R	21150157	21150236	Tirant	11	8514	7.0	7.0	7.0	1.4	8560	chr3R	21141676	intron	SNF4Agamma +	chr3R	21145956	intron	SNF4Agamma +	chr3R	21150236	intron	SNF4Agamma +	chr3R_11_21145001	chr3R_21145001	RAL-307_125b
3156	chr3R	21761083	21761105	chr3R	21768525	21768547	mdg1	4	7440	13.5	9.0	11.2	0.3	7464	chr3R	21761083	exon	CG42335 +	chr3R	21764815	intron	CG42335 +	chr3R	21768547	exon	CG42335 +	chr3R_4_21760001	chr3R_21760001	RAL-307_125b
3157	chr3R	21761110	21761125	chr3R	21768522	21768567	mdg1	4	7429	10.0	8.5	9.2	0.4	7457	chr3R	21761110	exon	CG42335 +	chr3R	21764838	intron	CG42335 +	chr3R	21768567	exon	CG42335 +	chr3R_4_21760001	chr3R_21760001	RAL-307_125b
3158	chr3R	21761133	21761155	chr3R	21768511	21768560	mdg1	6	7419	7.0	6.0	6.5	0.8	7427	chr3R	21761133	exon	CG42335 +	chr3R	21764846	intron	CG42335 +	chr3R	21768560	exon	CG42335 +	chr3R_6_21760001	chr3R_21760001	RAL-307_125b
3171	chr3R	22234634	22234703	chr3R	22236003	22236072	pogo	5	1369	24.0	40.5	32.2	0.2	1438	chr3R	22234634	intron	SKIP +	chr3R	22235353	intron	SKIP +	chr3R	22236072	intron	SKIP +	chr3R_5_22235001	chr3R_22235001	RAL-307_125b
3172	chr3R	22239461	22239521	chr3R	22248555	22248619	roo	21	9098	8.0	3.5	5.8	3.1	9158	chr3R	22239461	intron	SKIP +	chr3R	22244040	intron	SKIP +	chr3R	22248619	intron	SKIP +	chr3R_21_22240001	chr3R_22240001	RAL-307_125b
3178	chr3R	22450507	22450568	chr3R	22453197	22453258	NOF	19	2684	9.5	10.5	10.0	1.7	2751	chr3R	22450507	intron	CG34376 +	chr3R	22451882	intron	CG34376 +	chr3R	22453258	intron	CG34376 +	chr3R_19_22450001	chr3R_22450001	RAL-307_125b
3198	chr3R	22881190	22881219	chr3R	22884946	22884975	Doc	19	3755	9.0	14.5	11.8	1.5	3785	chr3R	22881190	intergenic	not near genes	chr3R	22883082	intergenic	not near genes	chr3R	22884975	intergenic	not near genes	chr3R_19_22880001	chr3R_22880001	RAL-307_125b
3222	chr3R	23558350	23558426	chr3R	23560181	23560257	Bari1	23	1829	9.0	9.0	9.0	2.3	1907	chr3R	23558350	intron	beat-IV +	chr3R	23559304	intron	beat-IV +	chr3R	23560257	intron	beat-IV +	chr3R_23_23555001	chr3R_23555001	RAL-307_125b
3225	chr3R	23684654	23684718	chr3R	23685190	23685233	roo	11	531	6.5	4.5	5.5	1.7	579	chr3R	23684654	exon	CG18754 +	chr3R	23684944	intron	CG18754 +	chr3R	23685233	exon	CG18754 +	chr3R_11_23680001	chr3R_23680001	RAL-307_125b
3229	chr3R	23835366	23835423	chr3R	23844566	23844623	roo	29	9200	12.0	2.5	7.2	3.5	9257	chr3R	23835366	intron	CG34355 +	chr3R	23839994	intron	CG34355 +	chr3R	23844623	intron	CG34355 +	chr3R_29_23835001	chr3R_23835001	RAL-307_125b
3230	chr3R	23851042	23851078	chr3R	23858759	23858795	opus	16	7716	12.5	19.5	16.0	0.9	7753	chr3R	23851042	3` UTR	CG34355 +	chr3R	23854918	intergenic	not near genes	chr3R	23858795	intergenic	not near genes	chr3R_16_23850001	chr3R_23850001	RAL-307_125b
3238	chr3R	24072072	24072108	chr3R	24072534	24072569	jockey	12	481	14.0	13.5	13.8	0.8	497	chr3R	24072072	intron	4EHP -	chr3R	24072320	intron	4EHP -	chr3R	24072569	intron	4EHP -	chr3R_12_24070001	chr3R_24070001	RAL-307_125b
3239	chr3R	24076880	24076918	chr3R	24078397	24078414	hobo	14	1515	8.5	20.5	14.5	0.9	1534	chr3R	24076880	intron	4EHP -	chr3R	24077647	intron	4EHP -	chr3R	24078414	intron	4EHP -	chr3R_14_24075001	chr3R_24075001	RAL-307_125b
3240	chr3R	24076922	24076940	chr3R	24078388	24078457	hobo	8	1510	7.0	19.5	13.2	0.6	1535	chr3R	24076922	intron	4EHP -	chr3R	24077690	intron	4EHP -	chr3R	24078457	intron	4EHP -	chr3R_8_24075001	chr3R_24075001	RAL-307_125b
3244	chr3R	24207190	24207241	chr3R	24212294	24212328	flea	17	5116	9.5	12.0	10.8	1.4	5138	chr3R	24207190	intron	twin -	chr3R	24209759	intron	twin -	chr3R	24212328	intron	twin -	chr3R_17_24205001	chr3R_24205001	RAL-307_125b
3249	chr3R	24493235	24493271	chr3R	24493514	24493550	BS	19	279	21.0	15.5	18.2	1.0	315	chr3R	24493235	intergenic	not near genes	chr3R	24493392	intergenic	not near genes	chr3R	24493550	intergenic	not near genes	chr3R_19_24490001	chr3R_24490001	RAL-307_125b
3250	chr3R	24493274	24493293	chr3R	24493508	24493549	BS	17	272	14.0	13.5	13.8	1.1	275	chr3R	24493274	intergenic	not near genes	chr3R	24493412	intergenic	not near genes	chr3R	24493549	intergenic	not near genes	chr3R_17_24490001	chr3R_24490001	RAL-307_125b
3253	chr3R	24594628	24594664	chr3R	24594918	24594949	pogo	16	289	12.0	10.0	11.0	1.3	321	chr3R	24594628	intron	mld +	chr3R	24594788	intron	mld +	chr3R	24594949	intron	mld +	chr3R_16_24590001	chr3R_24590001	RAL-307_125b
3257	chr3R	24730051	24730064	chr3R	24732479	24732492	Doc	6	2427	22.0	4.0	13.0	0.4	2441	chr3R	24730051	intron	tok +	chr3R	24731272	intron	tok +	chr3R	24732492	intron	tok +	chr3R_6_24730001	chr3R_24730001	RAL-307_125b
3258	chr3R	24730066	24730118	chr3R	24732469	24732553	Doc	12	2419	11.5	3.5	7.5	1.4	2487	chr3R	24730066	intron	tok +	chr3R	24731310	intron	tok +	chr3R	24732553	intron	tok +	chr3R_12_24730001	chr3R_24730001	RAL-307_125b
3267	chr3R	24927087	24927148	chr3R	24931928	24931961	Doc	32	4838	12.0	6.0	9.0	3.2	4874	chr3R	24927087	intergenic	Trf4-2 +	chr3R	24929524	intergenic	not near genes	chr3R	24931961	intergenic	CG11771 +	chr3R_32_24925001	chr3R_24925001	RAL-307_125b
3286	chr3R	25725789	25725860	chr3R	25734999	25735000	roo	32	9207	11.0	14.0	12.5	2.4	9211	chr3R	25725789	intron	LpR2 -	chr3R	25730394	intron	LpR2 -	chr3R	25735000	intron	LpR2 -	chr3R_32_25730001	chr3R_25730001	RAL-307_125b
3288	chr3R	25832660	25832721	chr3R	25841892	25841895	roo	16	9222	5.0	8.0	6.5	2.1	9235	chr3R	25832660	exon	alpha4GT2 +	chr3R	25837278	intron	alpha4GT2 +	chr3R	25841895	exon	alpha4GT2 +	chr3R_16_25835001	chr3R_25835001	RAL-307_125b
3317	chr3R	26376278	26376353	chr3R	26385488	26385577	roo	22	9212	8.5	0.0	4.2	4.2	9299	chr3R	26376278	intergenic	not near genes	chr3R	26380928	intergenic	not near genes	chr3R	26385577	intergenic	not near genes	chr3R_22_26380001	chr3R_26380001	RAL-307_125b
3324	chr3R	26510472	26510523	chr3R	26519583	26519634	roo	14	9109	0.0	13.0	6.5	1.9	9162	chr3R	26510472	intron	plum -	chr3R	26515053	intron	plum -	chr3R	26519634	intron,5` UTR	plum -,CR45226 +	chr3R_14_26515001	chr3R_26515001	RAL-307_125b
3325	chr3R	26558283	26558350	chr3R	26565645	26565685	Stalker4	19	7355	11.0	6.5	8.8	1.9	7402	chr3R	26558283	intron	scrib +	chr3R	26561984	intron	scrib +	chr3R	26565685	intron	scrib +	chr3R_19_26560001	chr3R_26560001	RAL-307_125b
3327	chr3R	26642687	26642696	chr3R	26643130	26643139	jockey	7	443	31.5	13.0	22.2	0.3	452	chr3R	26642687	intergenic	not near genes	chr3R	26642913	intergenic	not near genes	chr3R	26643139	intergenic	not near genes	chr3R_7_26640001	chr3R_26640001	RAL-307_125b
3328	chr3R	26642697	26642752	chr3R	26643129	26643195	jockey	31	438	19.5	13.0	16.2	1.8	498	chr3R	26642697	intergenic	not near genes	chr3R	26642946	intergenic	not near genes	chr3R	26643195	intergenic	not near genes	chr3R_31_26640001	chr3R_26640001	RAL-307_125b
3333	chr3R	26810506	26810535	chr3R	26811040	26811070	roo	13	535	14.5	15.5	15.0	0.8	564	chr3R	26810506	intron	Tl +	chr3R	26810788	intron	Tl +	chr3R	26811070	intron	Tl +	chr3R_13_26810001	chr3R_26810001	RAL-307_125b
3334	chr3R	26810536	26810574	chr3R	26811038	26811109	roo	25	533	9.0	15.0	12.0	1.9	573	chr3R	26810536	intron	Tl +	chr3R	26810822	intron	Tl +	chr3R	26811109	intron	Tl +	chr3R_25_26810001	chr3R_26810001	RAL-307_125b
3335	chr3R	27007360	27007436	chr3R	27016545	27016606	roo	31	9181	10.5	13.0	11.8	2.4	9246	chr3R	27007360	intron	RYa-R +	chr3R	27011983	intron	RYa-R +	chr3R	27016606	intron	RYa-R +	chr3R_31_27010001	chr3R_27010001	RAL-307_125b
3348	chr3R	27140474	27140544	chr3R	27148134	27148162	412	26	7656	7.5	13.0	10.2	2.3	7688	chr3R	27140474	intron	CG6051 -	chr3R	27144318	intron	CG6051 -	chr3R	27148162	intron	CG6051 -	chr3R_26_27140001	chr3R_27140001	RAL-307_125b
3358	chr3R	27342753	27342764	chr3R	27351384	27351395	Tirant	8	8631	22.5	10.5	16.5	0.5	8642	chr3R	27342753	intron	CG42534 +	chr3R	27347074	intron	CG42534 +	chr3R	27351395	intron	CG42534 +	chr3R_8_27345001	chr3R_27345001	RAL-307_125b
3359	chr3R	27342765	27342822	chr3R	27351380	27351453	Tirant	31	8629	10.0	10.5	10.2	2.8	8688	chr3R	27342765	intron	CG42534 +	chr3R	27347109	intron	CG42534 +	chr3R	27351453	intron	CG42534 +	chr3R_31_27345001	chr3R_27345001	RAL-307_125b
3367	chr3R	27521116	27521184	chr3R	27530375	27530416	roo	26	9258	12.0	13.5	12.8	1.9	9300	chr3R	27521116	intron	CG12885 +	chr3R	27525766	intron	CG12885 +	chr3R	27530416	intron	CG12885 +	chr3R_26_27525001	chr3R_27525001	RAL-307_125b
3379	chr3R	27725533	27725570	chr3R	27731025	27731062	I-element	15	5491	7.0	14.5	10.8	1.3	5529	chr3R	27725533	intergenic	not near genes	chr3R	27728298	intergenic	not near genes	chr3R	27731062	intergenic	not near genes	chr3R_15_27725001	chr3R_27725001	RAL-307_125b
3381	chr3R	27791597	27791642	chr3R	27794801	27794845	Rt1c	16	3200	10.0	15.0	12.5	1.2	3248	chr3R	27791597	intron	CG34353 -	chr3R	27793221	intron	CG34353 -	chr3R	27794845	intron	CG34353 -	chr3R_16_27790001	chr3R_27790001	RAL-307_125b
3384	chr3R	27856718	27856780	chr3R	27858251	27858313	hopper2	32	1529	11.5	11.5	11.5	2.6	1595	chr3R	27856718	intron	CG34353 -	chr3R	27857516	intron	CG34353 -	chr3R	27858313	intron	CG34353 -	chr3R_32_27855001	chr3R_27855001	RAL-307_125b
3385	chr3R	27862917	27862984	chr3R	27868271	27868297	Transpac	25	5345	10.5	10.5	10.5	2.2	5380	chr3R	27862917	intron	CG34353 -	chr3R	27865607	intron	CG34353 -	chr3R	27868297	intron	CG34353 -	chr3R_25_27865001	chr3R_27865001	RAL-307_125b
3386	chr3R	27875660	27875664	chr3R	27882765	27882769	297	4	7105	26.0	13.5	19.8	0.2	7109	chr3R	27875660	intron	CG34353 -	chr3R	27879214	intron	CG34353 -	chr3R	27882769	intron	CG34353 -	chr3R_4_27875001	chr3R_27875001	RAL-307_125b
3387	chr3R	27875666	27875724	chr3R	27882761	27882829	297	29	7102	10.5	12.5	11.5	2.3	7163	chr3R	27875666	intron	CG34353 -	chr3R	27879248	intron	CG34353 -	chr3R	27882829	intron	CG34353 -	chr3R_29_27875001	chr3R_27875001	RAL-307_125b
3390	chr3R	28068474	28068517	chr3R	28073940	28074009	I-element	11	5487	1.5	4.0	2.8	2.9	5535	chr3R	28068474	intron	CG34362 +	chr3R	28071242	intron	CG34362 +	chr3R	28074009	intron	CG34362 +	chr3R_11_28070001	chr3R_28070001	RAL-307_125b
3393	chr3R	28173623	28173694	chr3R	28181103	28181174	mdg1	24	7479	9.0	8.5	8.8	2.4	7551	chr3R	28173623	intron	CG34354 +	chr3R	28177398	intron	CG34354 +	chr3R	28181174	intron	CG34354 +	chr3R_24_28175001	chr3R_28175001	RAL-307_125b
3394	chr3R	28253308	28253331	chr3R	28255868	28255891	jockey	6	2556	20.0	15.5	17.8	0.3	2583	chr3R	28253308	intergenic	not near genes	chr3R	28254600	intergenic	not near genes	chr3R	28255891	intergenic	not near genes	chr3R_6_28250001	chr3R_28250001	RAL-307_125b
3395	chr3R	28253334	28253368	chr3R	28255861	28255913	jockey	11	2553	7.0	14.5	10.8	0.9	2579	chr3R	28253334	intergenic	not near genes	chr3R	28254624	intergenic	not near genes	chr3R	28255913	intergenic	not near genes	chr3R_11_28250001	chr3R_28250001	RAL-307_125b
3397	chr3R	28302066	28302121	chr3R	28302555	28302610	jockey	36	488	15.0	16.5	15.8	2.1	544	chr3R	28302066	intergenic	not near genes	chr3R	28302338	intergenic	not near genes	chr3R	28302610	intergenic	not near genes	chr3R_36_28300001	chr3R_28300001	RAL-307_125b
3408	chr3R	28758272	28758319	chr3R	28771329	28771375	Stalker4	17	13054	8.5	7.5	8.0	1.9	13103	chr3R	28758272	intergenic	aqrs -	chr3R	28764824	intergenic	not near genes	chr3R	28771375	intergenic	not near genes	chr3R_17_28760001	chr3R_28760001	RAL-307_125b
3409	chr3R	28763909	28763922	chr3R	28771402	28771415	Stalker4	9	7493	0.0	25.5	12.8	0.7	7506	chr3R	28763909	intergenic	not near genes	chr3R	28767662	intergenic	not near genes	chr3R	28771415	intergenic	not near genes	chr3R_9_28765001	chr3R_28765001	RAL-307_125b
3410	chr3R	28792857	28792900	chr3R	28797967	28798024	jockey	19	5127	0.5	6.5	3.5	4.2	5167	chr3R	28792857	intergenic	not near genes	chr3R	28795440	intergenic	not near genes	chr3R	28798024	intergenic	not near genes	chr3R_19_28795001	chr3R_28795001	RAL-307_125b
3429	chr3R	29079341	29079395	chr3R	29080763	29080815	NOF	28	1422	13.5	12.5	13.0	2.0	1474	chr3R	29079341	intron	CG11873 +	chr3R	29080078	intron	CG11873 +	chr3R	29080815	intron	CG11873 +	chr3R_28_29080001	chr3R_29080001	RAL-307_125b
3444	chr3R	29319778	29319836	chr3R	29320147	29320205	jockey	16	368	7.0	12.5	9.8	1.5	427	chr3R	29319778	intergenic	Cnx99A -	chr3R	29319992	intergenic	Cnx99A -	chr3R	29320205	intergenic	not near genes	chr3R_16_29315001	chr3R_29315001	RAL-307_125b
3453	chr3R	29406582	29406629	chr3R	29407913	29407965	jockey	26	1329	12.0	9.0	10.5	2.3	1383	chr3R	29406582	intron	Ptp99A +	chr3R	29407274	intron	Ptp99A +	chr3R	29407965	intron	Ptp99A +	chr3R_26_29405001	chr3R_29405001	RAL-307_125b
3454	chr3R	29406630	29406643	chr3R	29407906	29407932	jockey	5	1297	9.5	7.5	8.5	0.5	1302	chr3R	29406630	intron	Ptp99A +	chr3R	29407281	intron	Ptp99A +	chr3R	29407932	intron	Ptp99A +	chr3R_5_29405001	chr3R_29405001	RAL-307_125b
3472	chr3R	29738223	29738235	chr3R	29739740	29739752	hobo	5	1517	26.5	12.0	19.2	0.2	1529	chr3R	29738223	intergenic	CG1969 +,CG7598 +	chr3R	29738988	intron	CG1969 +	chr3R	29739752	5` UTR	CG1969 +	chr3R_5_29735001	chr3R_29735001	RAL-307_125b
3473	chr3R	29738240	29738298	chr3R	29739734	29739771	hobo	22	1511	12.0	11.5	11.8	1.7	1531	chr3R	29738240	intergenic	CG1969 +,CG7598 +	chr3R	29739006	intron	CG1969 +	chr3R	29739771	5` UTR	CG1969 +	chr3R_22_29735001	chr3R_29735001	RAL-307_125b
3476	chr3R	29760314	29760383	chr3R	29761565	29761632	pogo	35	1251	11.5	10.5	11.0	2.9	1318	chr3R	29760314	intergenic	not near genes	chr3R	29760973	intergenic	not near genes	chr3R	29761632	intergenic	not near genes	chr3R_35_29760001	chr3R_29760001	RAL-307_125b
3478	chr3R	29881978	29882044	chr3R	29891184	29891250	roo	24	9206	15.5	11.0	13.2	1.7	9272	chr3R	29881978	intron	CG31038 +	chr3R	29886614	intron	CG31038 +	chr3R	29891250	intron	CG31038 +	chr3R_24_29885001	chr3R_29885001	RAL-307_125b
3485	chr3R	30084813	30084874	chr3R	30086324	30086391	hobo	15	1509	7.0	10.5	8.8	1.5	1578	chr3R	30084813	intron	sima +	chr3R	30085602	intron	sima +	chr3R	30086391	intron	sima +	chr3R_15_30085001	chr3R_30085001	RAL-307_125b
3491	chr3R	30238723	30238788	chr3R	30239937	30240001	1360	36	1211	12.5	19.5	16.0	2.1	1278	chr3R	30238723	intergenic	not near genes	chr3R	30239362	intergenic	not near genes	chr3R	30240001	intergenic	not near genes	chr3R_36_30235001	chr3R_30235001	RAL-307_125b
3498	chr3R	30317334	30317340	chr3R	30324961	30324982	roo	6	7638	0.0	11.5	5.8	0.9	7648	chr3R	30317334	intron	hdc +	chr3R	30321158	intron	hdc +	chr3R	30324982	intron	hdc +	chr3R_6_30320001	chr3R_30320001	RAL-307_125b
3500	chr3R	30375502	30375565	chr3R	30383175	30383238	412	9	7672	4.5	5.0	4.8	1.6	7736	chr3R	30375502	intergenic	not near genes	chr3R	30379370	intergenic	not near genes	chr3R	30383238	intergenic	not near genes	chr3R_9_30375001	chr3R_30375001	RAL-307_125b
3501	chr3R	30396148	30396229	chr3R	30404483	30404545	roo	37	8334	5.0	6.5	5.8	5.4	8397	chr3R	30396148	intergenic	not near genes	chr3R	30400346	intergenic	not near genes	chr3R	30404545	5` UTR	CR45570 +	chr3R_37_30400001	chr3R_30400001	RAL-307_125b
3511	chr3R	30480445	30480500	chr3R	30482946	30483018	jockey	16	2507	5.5	2.0	3.8	3.3	2573	chr3R	30480445	intron	PH4alphaEFB +	chr3R	30481732	intron	PH4alphaEFB +	chr3R	30483018	intron	PH4alphaEFB +	chr3R_16_30480001	chr3R_30480001	RAL-307_125b
3520	chr3R	30679475	30679551	chr3R	30686994	30687070	blood	38	7517	6.0	4.5	5.2	6.1	7595	chr3R	30679475	intergenic	not near genes	chr3R	30683272	intergenic	not near genes	chr3R	30687070	intergenic	not near genes	chr3R_38_30680001	chr3R_30680001	RAL-307_125b
3526	chr3R	30818767	30818839	chr3R	30820382	30820429	1360	41	1613	4.0	14.5	9.2	4.0	1662	chr3R	30818767	intron	cindr +	chr3R	30819598	intron	cindr +	chr3R	30820429	intron	cindr +	chr3R_41_30815001	chr3R_30815001	RAL-307_125b
3542	chr3R	31074195	31074237	chr3R	31081842	31081885	springer	11	7648	9.5	9.0	9.2	1.1	7690	chr3R	31074195	intron	Sox100B +	chr3R	31078040	intron	Sox100B +	chr3R	31081885	intron	Sox100B +	chr3R_11_31075001	chr3R_31075001	RAL-307_125b
3543	chr3R	31074238	31074252	chr3R	31081840	31081895	springer	5	7638	7.0	8.0	7.5	0.6	7657	chr3R	31074238	intron	Sox100B +	chr3R	31078066	intron	Sox100B +	chr3R	31081895	exon	Sox100B +	chr3R_5_31075001	chr3R_31075001	RAL-307_125b
3552	chr3R	31279343	31279395	chr3R	31285569	31285610	diver	27	6235	12.0	14.0	13.0	1.9	6267	chr3R	31279343	intergenic	not near genes	chr3R	31282476	intergenic	not near genes	chr3R	31285610	intergenic	not near genes	chr3R_27_31280001	chr3R_31280001	RAL-307_125b
3553	chr3R	31413046	31413106	chr3R	31418296	31418316	copia	9	5236	6.5	0.5	3.5	2.0	5270	chr3R	31413046	intron	Gprk2 +	chr3R	31415681	intron	Gprk2 +	chr3R	31418316	intron	Gprk2 +	chr3R_9_31415001	chr3R_31415001	RAL-307_125b
3556	chr3R	31691490	31691559	chr3R	31696306	31696333	Doc	25	4809	5.5	10.5	8.0	2.8	4843	chr3R	31691490	intergenic	not near genes	chr3R	31693912	intergenic	not near genes	chr3R	31696333	intergenic	not near genes	chr3R_25_31690001	chr3R_31690001	RAL-307_125b
3563	chr3R	31997946	31998019	chr3R	32005466	32005477	blood	34	7515	9.5	11.5	10.5	3.0	7531	chr3R	31997946	intron	heph -	chr3R	32001712	intron	heph -	chr3R	32005477	intron	heph -	chr3R_34_32000001	chr3R_32000001	RAL-307_125b
3565	chr4	76452	76512	chr4	81945	81969	I-element	26	5490	13.5	14.0	13.8	1.8	5517	chr4	76452	intron	pan +	chr4	79210	intron	pan +	chr4	81969	intron	pan +	chr4_26_75001	chr4_75001	RAL-307_125b
3568	chr4	319947	320000	chr4	328173	328226	Stalker2	14	8224	8.5	5.0	6.8	1.8	8279	chr4	319947	3` UTR	CG32850 +	chr4	324086	intron	CG32850 +	chr4	328226	3` UTR,3` UTR	CG32850 +,PMCA -	chr4_14_320001	chr4_320001	RAL-307_125b
3570	chr4	671561	671590	chr4	680194	680208	Tirant	12	8632	24.5	15.5	20.0	0.6	8647	chr4	671561	intron	CG11360 +	chr4	675884	intron	CG11360 +	chr4	680208	intron	CG11360 +	chr4_12_675001	chr4_675001	RAL-307_125b
3571	chr4	671591	671609	chr4	680193	680242	Tirant	7	8628	20.5	15.0	17.8	0.4	8651	chr4	671591	intron	CG11360 +	chr4	675916	intron	CG11360 +	chr4	680242	intron	CG11360 +	chr4_7_675001	chr4_675001	RAL-307_125b
3572	chr4	671611	671627	chr4	680187	680260	Tirant	11	8625	15.0	14.0	14.5	0.7	8649	chr4	671611	intron	CG11360 +	chr4	675936	intron	CG11360 +	chr4	680260	intron	CG11360 +	chr4_11_675001	chr4_675001	RAL-307_125b
3575	chr4	769760	769777	chr4	769936	769953	INE-1	9	175	19.0	13.0	16.0	0.5	193	chr4	769760	intron	bt +	chr4	769856	intron	bt +	chr4	769953	intron	bt +	chr4_9_765001	chr4_765001	RAL-307_125b
3578	chrX	295810	295881	chrX	303480	303545	412	32	7667	7.5	7.0	7.2	3.9	7735	chrX	295810	intron	CG3777 +	chrX	299678	intron	CG3777 +	chrX	303545	intron	CG3777 +	chrX_32_295001	chrX_295001	RAL-307_125b
3579	chrX	318436	318487	chrX	323572	323621	flea	18	5134	16.0	14.5	15.2	1.1	5185	chrX	318436	intron,intron	CG3777 +,CG32816 -	chrX	321028	intron,intron	CG3777 +,CG32816 -	chrX	323621	intron,intron	CG3777 +,CG32816 -	chrX_18_320001	chrX_320001	RAL-307_125b
3582	chrX	428377	428446	chrX	434612	434641	3S18	28	6231	9.0	10.5	9.8	2.6	6264	chrX	428377	intron	CG32816 -	chrX	431509	intron	CG32816 -	chrX	434641	intron	CG32816 -	chrX_28_430001	chrX_430001	RAL-307_125b
3584	chrX	551385	551447	chrX	558997	559034	412	19	7607	6.0	3.0	4.5	3.5	7649	chrX	551385	intron	Appl +	chrX	555210	intron	Appl +	chrX	559034	intron	Appl +	chrX_19_555001	chrX_555001	RAL-307_125b
3587	chrX	812224	812243	chrX	817905	817923	297	7	5680	19.5	8.0	13.8	0.5	5699	chrX	812224	intron	CG43867 -	chrX	815074	intron	CG43867 -	chrX	817923	intron	CG43867 -	chrX_7_815001	chrX_815001	RAL-307_125b
3588	chrX	812247	812289	chrX	817904	817970	297	23	5675	8.0	8.0	8.0	2.6	5723	chrX	812247	intron	CG43867 -	chrX	815108	intron	CG43867 -	chrX	817970	intron	CG43867 -	chrX_23_815001	chrX_815001	RAL-307_125b
3589	chrX	827560	827630	chrX	835402	835462	roo	23	7841	15.0	13.0	14.0	1.5	7902	chrX	827560	intron	CG43867 -	chrX	831511	intron	CG43867 -	chrX	835462	intron	CG43867 -	chrX_23_830001	chrX_830001	RAL-307_125b
3591	chrX	906663	906727	chrX	908492	908566	S-element	24	1836	10.5	6.0	8.2	2.6	1903	chrX	906663	intron	CG43867 -	chrX	907614	intron	CG43867 -	chrX	908566	intron	CG43867 -	chrX_24_905001	chrX_905001	RAL-307_125b
3594	chrX	1033312	1033325	chrX	1040995	1041008	412	6	7683	16.0	5.0	10.5	0.5	7696	chrX	1033312	intron	su(w[a]) +	chrX	1037160	intron	su(w[a]) +	chrX	1041008	intron	su(w[a]) +	chrX_6_1035001	chrX_1035001	RAL-307_125b
3597	chrX	1063726	1063749	chrX	1072556	1072592	roo	10	8838	13.0	8.0	10.5	0.9	8866	chrX	1063726	intron	CR44779 +	chrX	1068159	intron	CR44779 +	chrX	1072592	intron	CR44779 +	chrX_10_1065001	chrX_1065001	RAL-307_125b
3603	chrX	1357731	1357795	chrX	1367951	1368015	Doc	28	10220	17.0	9.5	13.2	2.0	10284	chrX	1357731	intergenic	png -	chrX	1362873	intergenic	not near genes	chrX	1368015	intergenic	not near genes	chrX_28_1360001	chrX_1360001	RAL-307_125b
3604	chrX	1518005	1518039	chrX	1523457	1523491	jockey	20	5445	7.0	13.5	10.2	1.8	5486	chrX	1518005	intergenic	inc +	chrX	1520748	intergenic	not near genes	chrX	1523491	intergenic	not near genes	chrX_20_1520001	chrX_1520001	RAL-307_125b
3605	chrX	1518040	1518061	chrX	1523456	1523513	jockey	9	5436	4.5	13.5	9.0	0.9	5473	chrX	1518040	intergenic	inc +	chrX	1520776	intergenic	not near genes	chrX	1523513	intergenic	not near genes	chrX_9_1520001	chrX_1520001	RAL-307_125b
3610	chrX	1930492	1930502	chrX	1938113	1938123	opus	6	7621	21.5	5.0	13.2	0.4	7631	chrX	1930492	3` UTR	CG11596 +	chrX	1934308	intergenic	not near genes	chrX	1938123	3` UTR	CG3857 -	chrX_6_1930001	chrX_1930001	RAL-307_125b
3611	chrX	1930503	1930561	chrX	1938109	1938182	opus	25	7620	8.0	4.5	6.2	3.5	7679	chrX	1930503	3` UTR	CG11596 +	chrX	1934342	intergenic	not near genes	chrX	1938182	3` UTR	CG3857 -	chrX_25_1930001	chrX_1930001	RAL-307_125b
3612	chrX	1954850	1954913	chrX	1962833	1962873	Stalker2	8	7968	7.0	9.0	8.0	0.9	8023	chrX	1954850	intron	Hr4 +	chrX	1958862	intron	Hr4 +	chrX	1962873	intron	Hr4 +	chrX_8_1955001	chrX_1955001	RAL-307_125b
3616	chrX	2399790	2399871	chrX	2408193	2408218	roo	15	8386	3.5	4.0	3.8	3.1	8428	chrX	2399790	intergenic	not near genes	chrX	2404004	intergenic	not near genes	chrX	2408218	intergenic	not near genes	chrX_15_2400001	chrX_2400001	RAL-307_125b
3625	chrX	2610349	2610415	chrX	2617516	2617607	HMS-Beagle	17	7166	11.0	13.5	12.2	1.3	7258	chrX	2610349	intergenic	CG8636 -	chrX	2613978	intergenic	not near genes	chrX	2617607	intergenic	Tsp3A -	chrX_17_2610001	chrX_2610001	RAL-307_125b
3628	chrX	2664346	2664411	chrX	2665542	2665605	1360	37	1194	10.0	6.5	8.2	4.0	1259	chrX	2664346	intron	sgg +	chrX	2664976	intron	sgg +	chrX	2665605	intron	sgg +	chrX_37_2660001	chrX_2660001	RAL-307_125b
3629	chrX	2823752	2823768	chrX	2832350	2832361	roo	7	8595	12.0	5.5	8.8	0.7	8609	chrX	2823752	intron	kirre +	chrX	2828056	intron	kirre +	chrX	2832361	intron	kirre +	chrX_7_2825001	chrX_2825001	RAL-307_125b
3630	chrX	2823769	2823778	chrX	2832347	2832376	roo	4	8592	8.0	5.5	6.8	0.5	8607	chrX	2823769	intron	kirre +	chrX	2828072	intron	kirre +	chrX	2832376	intron	kirre +	chrX_4_2825001	chrX_2825001	RAL-307_125b
3631	chrX	2844859	2844893	chrX	2852319	2852353	mdg1	16	7458	16.5	12.0	14.2	1.1	7494	chrX	2844859	intron	kirre +	chrX	2848606	intron	kirre +	chrX	2852353	intron	kirre +	chrX_16_2845001	chrX_2845001	RAL-307_125b
3632	chrX	2844894	2844921	chrX	2852308	2852381	mdg1	9	7455	9.0	9.5	9.2	0.9	7487	chrX	2844894	intron	kirre +	chrX	2848638	intron	kirre +	chrX	2852381	intron	kirre +	chrX_9_2845001	chrX_2845001	RAL-307_125b
3634	chrX	3057982	3058043	chrX	3058273	3058334	pogo	31	290	5.5	5.0	5.2	5.0	352	chrX	3057982	intron	kirre +	chrX	3058158	intron	kirre +	chrX	3058334	intron	kirre +	chrX_31_3055001	chrX_3055001	RAL-307_125b
3635	chrX	3075589	3075664	chrX	3080946	3080972	Transpac	28	5353	6.5	12.0	9.2	2.7	5383	chrX	3075589	intron	kirre +	chrX	3078280	intron	kirre +	chrX	3080972	intron	kirre +	chrX_28_3075001	chrX_3075001	RAL-307_125b
3637	chrX	3178459	3178489	chrX	3186172	3186202	opus	6	7710	5.0	8.0	6.5	0.8	7743	chrX	3178459	intron	dnc +	chrX	3182330	intron	dnc +	chrX	3186202	intron	dnc +	chrX_6_3180001	chrX_3180001	RAL-307_125b
3639	chrX	3218499	3218538	chrX	3227668	3227707	roo	5	9187	1.0	8.5	4.8	0.9	9208	chrX	3218499	intron	dnc +	chrX	3223103	intron	dnc +	chrX	3227707	intron	dnc +	chrX_5_3220001	chrX_3220001	RAL-307_125b
3646	chrX	3414975	3415033	chrX	3421210	3421268	3S18	21	6230	5.0	9.5	7.2	2.6	6293	chrX	3414975	intron,intron	CR44999 +,CG12535 -	chrX	3418122	intron,intron	CR44999 +,CG12535 -	chrX	3421268	intron,intron	CR44999 +,CG12535 -	chrX_21_3415001	chrX_3415001	RAL-307_125b
3647	chrX	3493045	3493094	chrX	3502253	3502303	roo	19	9209	4.5	3.0	3.8	4.0	9258	chrX	3493045	intron,exon	CR44999 +,Gas8 -	chrX	3497674	intron,intron	CR44999 +,Gas8 -	chrX	3502303	intron,intron	CR44999 +,Gas8 -	chrX_19_3495001	chrX_3495001	RAL-307_125b
3650	chrX	3597507	3597583	chrX	3619725	3619802	roo	22	22218	8.0	7.5	7.8	2.5	22295	chrX	3597507	intron	AstA-R1 +	chrX	3608654	intron	AstA-R1 +	chrX	3619802	intron	AstA-R1 +	chrX_22_3605001	chrX_3605001	RAL-307_125b
3653	chrX	3726726	3726794	chrX	3730173	3730190	NOF	24	3441	6.5	13.5	10.0	2.2	3464	chrX	3726726	intron	tlk +	chrX	3728458	intron	tlk +	chrX	3730190	intron	tlk +	chrX_24_3725001	chrX_3725001	RAL-307_125b
3656	chrX	3842302	3842352	chrX	3842570	3842585	pogo	23	265	4.5	8.5	6.5	3.1	283	chrX	3842302	intron	ec +	chrX	3842444	intron	ec +	chrX	3842585	intron	ec +	chrX_23_3840001	chrX_3840001	RAL-307_125b
3663	chrX	3986839	3986895	chrX	3994495	3994546	412	31	7679	4.5	6.5	5.5	4.8	7707	chrX	3986839	intergenic	not near genes	chrX	3990692	intergenic	not near genes	chrX	3994546	intergenic	not near genes	chrX_31_3990001	chrX_3990001	RAL-307_125b
3667	chrX	4157853	4157923	chrX	4164950	4165022	297	25	7100	2.5	5.0	3.8	5.2	7169	chrX	4157853	intron	Fas2 -	chrX	4161438	intron	Fas2 -	chrX	4165022	intron	Fas2 -	chrX_25_4160001	chrX_4160001	RAL-307_125b
3679	chrX	4700339	4700414	chrX	4700735	4700807	jockey	34	391	9.0	12.0	10.5	3.0	468	chrX	4700339	3` UTR	ctp +	chrX	4700573	3` UTR	ctp +	chrX	4700807	3` UTR	ctp +	chrX_34_4700001	chrX_4700001	RAL-307_125b
3681	chrX	4731778	4731784	chrX	4736919	4736925	jockey	5	5142	24.0	11.5	17.8	0.3	5147	chrX	4731778	intergenic	not near genes	chrX	4734352	intergenic	not near genes	chrX	4736925	intergenic	not near genes	chrX_5_4730001	chrX_4730001	RAL-307_125b
3683	chrX	4763206	4763279	chrX	4763744	4763799	Stalker4	36	533	10.5	12.5	11.5	2.9	593	chrX	4763206	intergenic	not near genes	chrX	4763502	intergenic	not near genes	chrX	4763799	intergenic	not near genes	chrX_36_4760001	chrX_4760001	RAL-307_125b
3684	chrX	4792337	4792387	chrX	4792820	4792859	jockey	14	479	11.0	6.0	8.5	1.5	522	chrX	4792337	intergenic	not near genes	chrX	4792598	intergenic	not near genes	chrX	4792859	intergenic	not near genes	chrX_14_4790001	chrX_4790001	RAL-307_125b
3686	chrX	4827935	4827965	chrX	4835356	4835386	Stalker4	7	7421	13.5	7.0	10.2	0.6	7451	chrX	4827935	intergenic	not near genes	chrX	4831660	intergenic	not near genes	chrX	4835386	intergenic	not near genes	chrX_7_4830001	chrX_4830001	RAL-307_125b
3687	chrX	4827967	4827997	chrX	4835343	4835377	Stalker4	16	7395	6.5	5.5	6.0	2.3	7410	chrX	4827967	intergenic	not near genes	chrX	4831672	intergenic	not near genes	chrX	4835377	intergenic	not near genes	chrX_16_4830001	chrX_4830001	RAL-307_125b
3691	chrX	4989998	4990068	chrX	4997262	4997332	roo	24	7263	11.0	11.0	11.0	2.0	7334	chrX	4989998	intron	CR44833 -	chrX	4993665	intron	CR44833 -	chrX	4997332	intron	CR44833 -	chrX_24_4990001	chrX_4990001	RAL-307_125b
3693	chrX	5096236	5096262	chrX	5103851	5103877	springer	9	7612	6.0	8.0	7.0	1.1	7641	chrX	5096236	intron,intron	CG15465 +,rg +	chrX	5100056	intron,intron	CG15465 +,rg +	chrX	5103877	intron,intron	CG15465 +,rg +	chrX_9_5100001	chrX_5100001	RAL-307_125b
3694	chrX	5096263	5096297	chrX	5103838	5103912	springer	9	7606	4.0	6.5	5.2	1.5	7649	chrX	5096263	intron,intron	CG15465 +,rg +	chrX	5100088	intron,intron	CG15465 +,rg +	chrX	5103912	intron,intron	CG15465 +,rg +	chrX_9_5100001	chrX_5100001	RAL-307_125b
3705	chrX	5338662	5338678	chrX	5339965	5339981	jockey	5	1303	18.0	4.0	11.0	0.4	1319	chrX	5338662	intergenic	not near genes	chrX	5339322	intergenic	not near genes	chrX	5339981	intergenic	SK +	chrX_5_5335001	chrX_5335001	RAL-307_125b
3706	chrX	5338683	5338723	chrX	5339960	5340026	jockey	10	1299	10.5	4.0	7.2	1.2	1343	chrX	5338683	intergenic	not near genes	chrX	5339354	intergenic	not near genes	chrX	5340026	intergenic	SK +	chrX_10_5335001	chrX_5335001	RAL-307_125b
3709	chrX	5389786	5389793	chrX	5392948	5392955	297	8	3162	7.0	22.5	14.8	0.5	3169	chrX	5389786	intron	SK +	chrX	5391370	intron	SK +	chrX	5392955	intron	SK +	chrX_8_5390001	chrX_5390001	RAL-307_125b
3711	chrX	5481077	5481089	chrX	5485020	5485099	I-element	8	4001	1.0	2.0	1.5	3.2	4022	chrX	5481077	intron	SPR +	chrX	5483088	intron	SPR +	chrX	5485099	intron	SPR +	chrX_8_5480001	chrX_5480001	RAL-307_125b
3713	chrX	5524801	5524822	chrX	5528714	5528735	412	6	3910	4.5	1.0	2.8	1.6	3934	chrX	5524801	intergenic	snoRNA:Psi28S-3342 -	chrX	5526768	intergenic	not near genes	chrX	5528735	intergenic	Vsx2 -	chrX_6_5525001	chrX_5525001	RAL-307_125b
3714	chrX	5727379	5727412	chrX	5732162	5732201	Doc	17	4788	8.0	9.0	8.5	1.8	4822	chrX	5727379	intron	CG32758 -	chrX	5729790	intron	CG32758 -	chrX	5732201	intron	CG32758 -	chrX_17_5725001	chrX_5725001	RAL-307_125b
3715	chrX	5883765	5883792	chrX	5884056	5884083	pogo	20	291	24.0	6.5	15.2	1.2	318	chrX	5883765	intron	CR45668 -	chrX	5883924	intron	CR45668 -	chrX	5884083	intron	CR45668 -	chrX_20_5880001	chrX_5880001	RAL-307_125b
3716	chrX	5883794	5883841	chrX	5884050	5884056	pogo	27	284	9.0	6.5	7.8	3.1	262	chrX	5883794	intron	CR45668 -	chrX	5883925	intron	CR45668 -	chrX	5884056	intron	CR45668 -	chrX_27_5880001	chrX_5880001	RAL-307_125b
3717	chrX	5884120	5884186	chrX	5884411	5884477	pogo	24	288	7.5	9.5	8.5	2.5	357	chrX	5884120	intron	CR45668 -	chrX	5884298	intron	CR45668 -	chrX	5884477	intron	CR45668 -	chrX_24_5880001	chrX_5880001	RAL-307_125b
3721	chrX	6171567	6171601	chrX	6179024	6179084	Quasimodo	13	7476	9.0	9.5	9.2	1.3	7517	chrX	6171567	intron	Ca-alpha1T -	chrX	6175326	intron	Ca-alpha1T -	chrX	6179084	intron	Ca-alpha1T -	chrX_13_6175001	chrX_6175001	RAL-307_125b
3727	chrX	6335195	6335236	chrX	6337748	6337781	Tirant	7	2552	0.0	9.5	4.8	1.2	2586	chrX	6335195	intergenic	not near genes	chrX	6336488	intergenic	not near genes	chrX	6337781	5` UTR	CG3842 +	chrX_7_6335001	chrX_6335001	RAL-307_125b
3728	chrX	6392841	6392874	chrX	6397638	6397662	Doc	11	4806	7.5	0.5	4.0	2.2	4821	chrX	6392841	intergenic	not near genes	chrX	6395252	intergenic	not near genes	chrX	6397662	intergenic	not near genes	chrX_11_6395001	chrX_6395001	RAL-307_125b
3729	chrX	6429962	6429990	chrX	6435483	6435484	Rt1c	12	5515	14.0	16.0	15.0	0.8	5522	chrX	6429962	intron	CG42340 -	chrX	6432723	intron	CG42340 -	chrX	6435484	intron	CG42340 -	chrX_12_6430001	chrX_6430001	RAL-307_125b
3730	chrX	6445258	6445267	chrX	6451070	6451079	297	4	5812	19.5	6.0	12.8	0.3	5821	chrX	6445258	intron	CG42340 -	chrX	6448168	intron	CG42340 -	chrX	6451079	intron	CG42340 -	chrX_4_6445001	chrX_6445001	RAL-307_125b
3733	chrX	6562775	6562841	chrX	6571307	6571373	Tirant	15	8522	10.5	6.0	8.2	1.6	8598	chrX	6562775	intron	CG34417 +	chrX	6567074	intron	CG34417 +	chrX	6571373	intron	CG34417 +	chrX_15_6565001	chrX_6565001	RAL-307_125b
3734	chrX	6605444	6605475	chrX	6608516	6608547	Burdock	14	3070	8.5	12.5	10.5	1.2	3103	chrX	6605444	intron	pigs +	chrX	6606996	intron	pigs +	chrX	6608547	intron	pigs +	chrX_14_6605001	chrX_6605001	RAL-307_125b
3735	chrX	6605477	6605492	chrX	6608503	6608564	Burdock	5	3063	6.0	11.0	8.5	0.5	3087	chrX	6605477	intron	pigs +	chrX	6607020	intron	pigs +	chrX	6608564	intron	pigs +	chrX_5_6605001	chrX_6605001	RAL-307_125b
3752	chrX	7023560	7023621	chrX	7030998	7031061	Tabor	21	7437	11.5	8.5	10.0	1.9	7501	chrX	7023560	intron	CG12541 -	chrX	7027310	intron	CG12541 -	chrX	7031061	intron	CG12541 -	chrX_21_7025001	chrX_7025001	RAL-307_125b
3758	chrX	7125219	7125266	chrX	7134428	7134443	roo	22	9207	0.5	11.5	6.0	3.1	9224	chrX	7125219	intergenic	not near genes	chrX	7129831	intergenic	not near genes	chrX	7134443	intergenic	not near genes	chrX_22_7125001	chrX_7125001	RAL-307_125b
3767	chrX	7702865	7702879	chrX	7703354	7703368	jockey	7	489	18.0	12.0	15.0	0.4	503	chrX	7702865	intron	CHES-1-like -	chrX	7703116	intron	CHES-1-like -	chrX	7703368	intron	CHES-1-like -	chrX_7_7700001	chrX_7700001	RAL-307_125b
3768	chrX	7702882	7702922	chrX	7703346	7703411	jockey	17	487	8.5	12.0	10.2	1.5	529	chrX	7702882	intron	CHES-1-like -	chrX	7703146	intron	CHES-1-like -	chrX	7703411	intron	CHES-1-like -	chrX_17_7700001	chrX_7700001	RAL-307_125b
3771	chrX	7845695	7845756	chrX	7847220	7847245	hopper2	25	1535	8.5	8.5	8.5	2.6	1550	chrX	7845695	intergenic	not near genes	chrX	7846470	intergenic	not near genes	chrX	7847245	intergenic	not near genes	chrX_25_7845001	chrX_7845001	RAL-307_125b
3773	chrX	8031378	8031446	chrX	8035737	8035801	Juan	19	4357	5.5	5.0	5.2	3.1	4423	chrX	8031378	intergenic	not near genes	chrX	8033590	intergenic	not near genes	chrX	8035801	3` UTR	CG2233 -	chrX_19_8030001	chrX_8030001	RAL-307_125b
3784	chrX	8364797	8364808	chrX	8365244	8365253	BS	7	447	21.5	11.5	16.5	0.4	456	chrX	8364797	intron	nAChRalpha3 -	chrX	8365025	intron	nAChRalpha3 -	chrX	8365253	intron	nAChRalpha3 -	chrX_7_8365001	chrX_8365001	RAL-307_125b
3785	chrX	8364811	8364867	chrX	8365242	8365314	BS	15	445	8.0	10.0	9.0	1.5	503	chrX	8364811	intron	nAChRalpha3 -	chrX	8365062	intron	nAChRalpha3 -	chrX	8365314	intron	nAChRalpha3 -	chrX_15_8365001	chrX_8365001	RAL-307_125b
3802	chrX	8922284	8922352	chrX	8922768	8922835	jockey	21	479	7.5	13.0	10.2	1.9	551	chrX	8922284	intron	rdgA +	chrX	8922560	intron	rdgA +	chrX	8922835	intron	rdgA +	chrX_21_8920001	chrX_8920001	RAL-307_125b
3803	chrX	8948722	8948782	chrX	8956282	8956327	roo	19	7558	0.0	14.0	7.0	2.4	7605	chrX	8948722	intron	rdgA +	chrX	8952524	intron	rdgA +	chrX	8956327	intron	rdgA +	chrX_19_8950001	chrX_8950001	RAL-307_125b
3815	chrX	9508097	9508161	chrX	9509665	9509677	jockey	30	1562	10.0	7.5	8.8	3.1	1580	chrX	9508097	intron	CG32700 -	chrX	9508887	intron	CG32700 -	chrX	9509677	intron	CG32700 -	chrX_30_9505001	chrX_9505001	RAL-307_125b
3817	chrX	9575768	9575817	chrX	9576117	9576186	mdg3	26	365	7.0	12.5	9.8	2.4	418	chrX	9575768	intron,exon	CG32699 -,CG42395 -	chrX	9575977	intron,intron	CG32699 -,CG42395 -	chrX	9576186	intron,5` UTR	CG32699 -,CG42395 -	chrX_26_9575001	chrX_9575001	RAL-307_125b
3833	chrX	10138190	10138248	chrX	10145744	10145802	412	22	7554	4.5	8.0	6.2	3.1	7612	chrX	10138190	intron,intron	RhoU +,CR44894 -	chrX	10141996	intron,intron	RhoU +,CR44894 -	chrX	10145802	intron,intron	RhoU +,CR44894 -	chrX_22_10140001	chrX_10140001	RAL-307_125b
3837	chrX	10267295	10267326	chrX	10276495	10276526	roo	7	9198	0.5	6.0	3.2	1.7	9231	chrX	10267295	3` UTR	alpha-Man-I -	chrX	10271910	intron	alpha-Man-I -	chrX	10276526	3` UTR	alpha-Man-I -	chrX_7_10270001	chrX_10270001	RAL-307_125b
3842	chrX	10348754	10348815	chrX	10356369	10356430	springer	12	7614	15.5	5.0	10.2	1.1	7676	chrX	10348754	intergenic	snoRNA:U3:9B +	chrX	10352592	intergenic	not near genes	chrX	10356430	intergenic	l(1)G0289 -	chrX_12_10350001	chrX_10350001	RAL-307_125b
3846	chrX	10550826	10550880	chrX	10552327	10552356	hobo	17	1505	6.5	6.5	6.5	2.3	1530	chrX	10550826	intron	spri -	chrX	10551591	intron	spri -	chrX	10552356	intron	spri -	chrX_17_10550001	chrX_10550001	RAL-307_125b
3847	chrX	10686005	10686027	chrX	10691192	10691214	roo	15	5186	16.0	0.0	8.0	1.7	5209	chrX	10686005	intron	X11Lbeta +	chrX	10688610	intron	X11Lbeta +	chrX	10691214	intron	X11Lbeta +	chrX_15_10685001	chrX_10685001	RAL-307_125b
3848	chrX	10686028	10686081	chrX	10691189	10691268	roo	21	5184	6.5	0.0	3.2	5.0	5240	chrX	10686028	intron	X11Lbeta +	chrX	10688648	intron	X11Lbeta +	chrX	10691268	intron	X11Lbeta +	chrX_21_10685001	chrX_10685001	RAL-307_125b
3850	chrX	10772681	10772698	chrX	10772763	10772830	Tirant	7	125	7.5	8.0	7.8	0.8	149	chrX	10772681	intron	CG15211 +	chrX	10772756	intron	CG15211 +	chrX	10772830	intron	CG15211 +	chrX_7_10770001	chrX_10770001	RAL-307_125b
3855	chrX	11095955	11096019	chrX	11103107	11103171	HMS-Beagle	22	7152	8.0	10.5	9.2	2.2	7216	chrX	11095955	intergenic	not near genes	chrX	11099563	intergenic	not near genes	chrX	11103171	intron	CG42249 +	chrX_22_11095001	chrX_11095001	RAL-307_125b
3858	chrX	11184225	11184257	chrX	11189334	11189386	flea	8	5124	7.5	9.5	8.5	0.8	5161	chrX	11184225	intergenic	not near genes	chrX	11186806	intergenic	not near genes	chrX	11189386	intergenic	not near genes	chrX_8_11185001	chrX_11185001	RAL-307_125b
3860	chrX	11240472	11240508	chrX	11241010	11241041	297	4	533	3.0	10.0	6.5	0.5	569	chrX	11240472	intron	CG44422 -	chrX	11240756	intron	CG44422 -	chrX	11241041	intron	CG44422 -	chrX_4_11240001	chrX_11240001	RAL-307_125b
3861	chrX	11268541	11268575	chrX	11270071	11270115	hopper2	11	1541	0.5	8.5	4.5	2.0	1574	chrX	11268541	intron	CG44422 -	chrX	11269328	intron	CG44422 -	chrX	11270115	intron	CG44422 -	chrX_11_11265001	chrX_11265001	RAL-307_125b
3862	chrX	11268580	11268596	chrX	11270066	11270078	hopper2	4	1512	0.5	7.5	4.0	0.8	1498	chrX	11268580	intron	CG44422 -	chrX	11269329	intron	CG44422 -	chrX	11270078	intron	CG44422 -	chrX_4_11265001	chrX_11265001	RAL-307_125b
3864	chrX	11312014	11312082	chrX	11319417	11319485	Stalker2	13	7399	8.0	4.5	6.2	1.8	7471	chrX	11312014	intergenic	not near genes	chrX	11315750	intergenic	not near genes	chrX	11319485	intergenic	not near genes	chrX_13_11315001	chrX_11315001	RAL-307_125b
3866	chrX	11534997	11535038	chrX	11541517	11541558	Burdock	17	6519	11.5	10.0	10.8	1.4	6561	chrX	11534997	intron	Drak +	chrX	11538278	intron	Drak +	chrX	11541558	intron	Drak +	chrX_17_11535001	chrX_11535001	RAL-307_125b
3867	chrX	11535039	11535046	chrX	11541514	11541566	Burdock	5	6510	11.0	9.5	10.2	0.4	6527	chrX	11535039	intron	Drak +	chrX	11538302	intron	Drak +	chrX	11541566	intron	Drak +	chrX_5_11535001	chrX_11535001	RAL-307_125b
3870	chrX	11633372	11633436	chrX	11640476	11640513	297	24	7102	15.0	11.0	13.0	1.7	7141	chrX	11633372	intron	Ptp10D +	chrX	11636942	intron	Ptp10D +	chrX	11640513	intron	Ptp10D +	chrX_24_11635001	chrX_11635001	RAL-307_125b
3871	chrX	11645071	11645117	chrX	11648290	11648336	NOF	9	3219	10.5	6.5	8.5	0.9	3265	chrX	11645071	intron	Ptp10D +	chrX	11646704	intron	Ptp10D +	chrX	11648336	intron	Ptp10D +	chrX_9_11645001	chrX_11645001	RAL-307_125b
3881	chrX	12168103	12168121	chrX	12173595	12173613	I-element	4	5492	8.5	1.0	4.8	0.7	5510	chrX	12168103	intron	Ten-a +	chrX	12170858	intron	Ten-a +	chrX	12173613	intron	Ten-a +	chrX_4_12170001	chrX_12170001	RAL-307_125b
3885	chrX	12301929	12301978	chrX	12303275	12303275	X-element	8	1332	6.0	3.5	4.8	1.4	1346	chrX	12301929	intron	Ten-a +	chrX	12302602	intron	Ten-a +	chrX	12303275	intron	Ten-a +	chrX_8_12300001	chrX_12300001	RAL-307_125b
3890	chrX	12381847	12381896	chrX	12385788	12385826	flea	10	3928	8.5	8.5	8.5	1.1	3979	chrX	12381847	intergenic	not near genes	chrX	12383836	intergenic	not near genes	chrX	12385826	intergenic	not near genes	chrX_10_12380001	chrX_12380001	RAL-307_125b
3905	chrX	12930546	12930601	chrX	12937712	12937767	HMS-Beagle	18	7165	10.0	14.0	12.0	1.4	7221	chrX	12930546	intron	fne +	chrX	12934156	intron	fne +	chrX	12937767	intron	fne +	chrX_18_12930001	chrX_12930001	RAL-307_125b
3923	chrX	13401436	13401508	chrX	13401838	13401910	jockey	15	400	4.5	3.0	3.8	3.1	474	chrX	13401436	intergenic	CG1673 +,CG12725 -	chrX	13401673	intergenic	CG12725 -,CG1673 +	chrX	13401910	3` UTR	CG12725 -	chrX_15_13400001	chrX_13400001	RAL-307_125b
3925	chrX	13429410	13429482	chrX	13430609	13430681	jockey	11	1199	0.0	7.5	3.8	2.3	1271	chrX	13429410	intergenic	not near genes	chrX	13430046	intergenic	not near genes	chrX	13430681	intergenic	not near genes	chrX_11_13430001	chrX_13430001	RAL-307_125b
3927	chrX	13463607	13463663	chrX	13469234	13469290	mdg3	26	5626	9.5	14.0	11.8	2.0	5683	chrX	13463607	intron	Neto +	chrX	13466448	intron	Neto +	chrX	13469290	intron	Neto +	chrX_26_13465001	chrX_13465001	RAL-307_125b
3936	chrX	13937929	13937983	chrX	13941250	13941287	I-element	17	3320	7.0	6.0	6.5	2.3	3358	chrX	13937929	intron	mamo -	chrX	13939608	intron	mamo -	chrX	13941287	intron	mamo -	chrX_17_13935001	chrX_13935001	RAL-307_125b
3938	chrX	14104994	14105046	chrX	14114171	14114247	roo	21	9192	7.5	3.5	5.5	3.2	9253	chrX	14104994	intergenic	not near genes	chrX	14109620	intergenic	not near genes	chrX	14114247	5` UTR	CR44657 +	chrX_21_14105001	chrX_14105001	RAL-307_125b
3942	chrX	14157549	14157618	chrX	14163256	14163325	297	8	5707	9.5	3.5	6.5	1.1	5776	chrX	14157549	intergenic	not near genes	chrX	14160437	intergenic	not near genes	chrX	14163325	intergenic	not near genes	chrX_8_14160001	chrX_14160001	RAL-307_125b
3944	chrX	14304039	14304062	chrX	14310307	14310330	17.6	6	6268	7.5	6.5	7.0	0.8	6291	chrX	14304039	intergenic	not near genes	chrX	14307184	intergenic	not near genes	chrX	14310330	intergenic	not near genes	chrX_6_14305001	chrX_14305001	RAL-307_125b
3947	chrX	14416266	14416317	chrX	14421083	14421135	F-element	19	4818	4.5	9.5	7.0	2.4	4869	chrX	14416266	intron	dpr8 +	chrX	14418700	intron	dpr8 +	chrX	14421135	intron	dpr8 +	chrX_19_14415001	chrX_14415001	RAL-307_125b
3953	chrX	14636418	14636448	chrX	14641909	14641935	I-element	11	5489	15.0	5.0	10.0	1.0	5517	chrX	14636418	intron	NetA -	chrX	14639176	intron	NetA -	chrX	14641935	intron	NetA -	chrX_11_14635001	chrX_14635001	RAL-307_125b
3954	chrX	14636450	14636489	chrX	14641904	14641969	I-element	16	5478	7.0	4.5	5.8	2.4	5519	chrX	14636450	intron	NetA -	chrX	14639210	intron	NetA -	chrX	14641969	intron	NetA -	chrX_16_14635001	chrX_14635001	RAL-307_125b
3956	chrX	14777990	14778049	chrX	14782837	14782896	Doc	33	4846	13.0	12.0	12.5	2.4	4906	chrX	14777990	intergenic	CG5347 +	chrX	14780443	intergenic	not near genes	chrX	14782896	intergenic	Ag5r2 -	chrX_33_14780001	chrX_14780001	RAL-307_125b
3960	chrX	14818719	14818794	chrX	14823968	14824048	copia	20	5252	6.5	8.0	7.2	2.4	5329	chrX	14818719	intron	rut -	chrX	14821384	intron	rut -	chrX	14824048	intron	rut -	chrX_20_14820001	chrX_14820001	RAL-307_125b
3961	chrX	14936793	14936880	chrX	14946114	14946187	roo	35	9318	0.5	6.5	3.5	7.8	9394	chrX	14936793	intron	pdgy -	chrX	14941490	intron	pdgy -	chrX	14946187	intron	pdgy -	chrX_35_14940001	chrX_14940001	RAL-307_125b
3964	chrX	15034060	15034075	chrX	15041643	15041658	rover	4	7583	7.0	14.5	10.8	0.3	7598	chrX	15034060	intron,3` UTR	hiw -,be +	chrX	15037859	intron,intron	hiw -,be +	chrX	15041658	intron,3` UTR	hiw -,be +	chrX_4_15035001	chrX_15035001	RAL-307_125b
3972	chrX	15273690	15273729	chrX	15274876	15274945	1360	10	1204	7.0	5.5	6.2	1.4	1255	chrX	15273690	intergenic	not near genes	chrX	15274318	intergenic	not near genes	chrX	15274945	intergenic	not near genes	chrX_10_15270001	chrX_15270001	RAL-307_125b
3974	chrX	15326687	15326715	chrX	15326935	15326963	I-element	11	248	0.5	9.5	5.0	1.8	276	chrX	15326687	3` UTR	Top1 +	chrX	15326825	3` UTR	Top1 +	chrX	15326963	3` UTR	Top1 +	chrX_11_15325001	chrX_15325001	RAL-307_125b
3976	chrX	15413016	15413049	chrX	15417360	15417401	Juan	7	4347	11.0	0.5	5.8	1.0	4385	chrX	15413016	intron	Cngl -	chrX	15415208	intron	Cngl -	chrX	15417401	intron	Cngl -	chrX_7_15415001	chrX_15415001	RAL-307_125b
3977	chrX	15421874	15421947	chrX	15423435	15423508	pogo	15	1561	6.0	8.5	7.2	1.8	1634	chrX	15421874	intron	Cngl -	chrX	15422691	intron	Cngl -	chrX	15423508	intron	Cngl -	chrX_15_15420001	chrX_15420001	RAL-307_125b
3993	chrX	16222746	16222754	chrX	16231146	16231154	roo	5	8400	0.0	8.5	4.2	1.0	8408	chrX	16222746	intergenic	not near genes	chrX	16226950	intergenic	not near genes	chrX	16231154	intergenic	not near genes	chrX_5_16225001	chrX_16225001	RAL-307_125b
3994	chrX	16222757	16222807	chrX	16231142	16231207	roo	21	8398	0.0	8.0	4.0	4.2	8450	chrX	16222757	intergenic	not near genes	chrX	16226982	intergenic	not near genes	chrX	16231207	intergenic	not near genes	chrX_21_16225001	chrX_16225001	RAL-307_125b
3995	chrX	16245906	16245960	chrX	16246063	16246117	INE-1	30	156	16.0	8.5	12.2	2.3	211	chrX	16245906	intergenic	not near genes	chrX	16246012	intergenic	not near genes	chrX	16246117	intergenic	not near genes	chrX_30_16245001	chrX_16245001	RAL-307_125b
3999	chrX	16340617	16340691	chrX	16349822	16349898	roo	22	9205	9.0	5.5	7.2	2.7	9281	chrX	16340617	3` UTR	Dsp1 +	chrX	16345258	intergenic	not near genes	chrX	16349898	intergenic	sl +	chrX_22_16345001	chrX_16345001	RAL-307_125b
4002	chrX	16492601	16492666	chrX	16498222	16498292	mdg3	28	5627	13.0	6.0	9.5	2.7	5691	chrX	16492601	intron	para -	chrX	16495446	intron	para -	chrX	16498292	exon	para -	chrX_28_16495001	chrX_16495001	RAL-307_125b
4013	chrX	16935960	16936023	chrX	16936428	16936491	jockey	15	464	7.0	2.5	4.8	2.6	531	chrX	16935960	intron	CG4928 +	chrX	16936226	intron	CG4928 +	chrX	16936491	intron	CG4928 +	chrX_15_16935001	chrX_16935001	RAL-307_125b
4015	chrX	17057892	17057929	chrX	17058183	17058220	pogo	6	291	10.0	12.0	11.0	0.5	328	chrX	17057892	intron	CG45002 -	chrX	17058056	intron	CG45002 -	chrX	17058220	intron	CG45002 -	chrX_6_17055001	chrX_17055001	RAL-307_125b
4016	chrX	17057936	17057956	chrX	17058178	17058247	pogo	5	281	6.0	11.5	8.8	0.5	311	chrX	17057936	intron	CG45002 -	chrX	17058092	intron	CG45002 -	chrX	17058247	intron	CG45002 -	chrX_5_17055001	chrX_17055001	RAL-307_125b
4019	chrX	17195160	17195223	chrX	17200296	17200359	flea	27	5134	13.5	14.5	14.0	1.8	5199	chrX	17195160	3` UTR	baz +	chrX	17197760	3` UTR	baz +	chrX	17200359	3` UTR	baz +	chrX_27_17195001	chrX_17195001	RAL-307_125b
4027	chrX	17431320	17431338	chrX	17431696	17431704	jockey	5	383	7.5	5.0	6.2	0.7	384	chrX	17431320	intron	CG12994 -	chrX	17431512	intron	CG12994 -	chrX	17431704	intron	CG12994 -	chrX_5_17430001	chrX_17430001	RAL-307_125b
4040	chrX	17792919	17792967	chrX	17796255	17796256	flea	10	3340	6.5	3.0	4.8	1.7	3337	chrX	17792919	intron	OdsH +	chrX	17794588	intron	OdsH +	chrX	17796256	intron	OdsH +	chrX_10_17790001	chrX_17790001	RAL-307_125b
4049	chrX	18429448	18429510	chrX	18434809	18434870	Transpac	39	5359	8.5	6.5	7.5	4.6	5422	chrX	18429448	intergenic	not near genes	chrX	18432159	intergenic	not near genes	chrX	18434870	intergenic	not near genes	chrX_39_18430001	chrX_18430001	RAL-307_125b
4055	chrX	18555336	18555410	chrX	18556902	18556946	transib2	13	1564	3.0	4.5	3.8	2.7	1610	chrX	18555336	intron	Bx +	chrX	18556141	intron	Bx +	chrX	18556946	intron	Bx +	chrX_13_18555001	chrX_18555001	RAL-307_125b
4062	chrX	18754292	18754345	chrX	18758009	18758062	297	16	3714	6.5	10.0	8.2	1.7	3770	chrX	18754292	intergenic	not near genes	chrX	18756177	intergenic	not near genes	chrX	18758062	intergenic	not near genes	chrX_16_18755001	chrX_18755001	RAL-307_125b
4068	chrX	18957031	18957086	chrX	18965744	18965799	roo	15	8713	8.0	5.0	6.5	2.0	8768	chrX	18957031	intron	CG43759 +	chrX	18961415	intron	CG43759 +	chrX	18965799	intron	CG43759 +	chrX_15_18960001	chrX_18960001	RAL-307_125b
4069	chrX	18957089	18957095	chrX	18965742	18965785	roo	4	8688	6.5	5.0	5.8	0.6	8696	chrX	18957089	intron	CG43759 +	chrX	18961437	intron	CG43759 +	chrX	18965785	intron	CG43759 +	chrX_4_18960001	chrX_18960001	RAL-307_125b
4075	chrX	19060367	19060420	chrX	19065201	19065254	Doc	15	4833	9.5	10.5	10.0	1.4	4887	chrX	19060367	intron	CG14190 +	chrX	19062810	intron	CG14190 +	chrX	19065254	intron	CG14190 +	chrX_15_19060001	chrX_19060001	RAL-307_125b
4084	chrX	19136512	19136581	chrX	19143482	19143499	412	23	6966	10.5	4.0	7.2	2.8	6987	chrX	19136512	intergenic	not near genes	chrX	19140006	intergenic	not near genes	chrX	19143499	3` UTR	RhoGAP18B -	chrX_23_19140001	chrX_19140001	RAL-307_125b
4088	chrX	19356950	19356965	chrX	19358441	19358456	NOF	11	1491	18.5	0.0	9.2	1.1	1506	chrX	19356950	intron	kek5 +	chrX	19357703	intron	kek5 +	chrX	19358456	intron	kek5 +	chrX_11_19355001	chrX_19355001	RAL-307_125b
4089	chrX	19356967	19357017	chrX	19358432	19358526	NOF	21	1505	7.0	0.0	3.5	4.7	1559	chrX	19356967	intron	kek5 +	chrX	19357746	intron	kek5 +	chrX	19358526	intron	kek5 +	chrX_21_19355001	chrX_19355001	RAL-307_125b
4090	chrX	19380112	19380179	chrX	19380403	19380470	pogo	29	291	13.5	8.5	11.0	2.4	358	chrX	19380112	intron	kek5 +	chrX	19380291	intron	kek5 +	chrX	19380470	intron	kek5 +	chrX_29_19380001	chrX_19380001	RAL-307_125b
4093	chrX	19472084	19472154	chrX	19472704	19472743	jockey	21	616	11.0	11.0	11.0	1.8	659	chrX	19472084	intergenic	kek5 +	chrX	19472414	intergenic	kek5 +	chrX	19472743	intergenic	not near genes	chrX_21_19470001	chrX_19470001	RAL-307_125b
4102	chrX	19710046	19710095	chrX	19711862	19711928	S-element	12	1832	5.0	7.5	6.2	1.7	1882	chrX	19710046	intron	meso18E -	chrX	19710987	intron	meso18E -	chrX	19711928	intron	meso18E -	chrX_12_19710001	chrX_19710001	RAL-307_125b
4105	chrX	19797300	19797340	chrX	19804663	19804703	Stalker4	11	7362	18.5	7.5	13.0	0.8	7403	chrX	19797300	intergenic	not near genes	chrX	19801002	intergenic	not near genes	chrX	19804703	intergenic	not near genes	chrX_11_19800001	chrX_19800001	RAL-307_125b
4128	chrX	20377273	20377346	chrX	20378790	20378823	hobo	8	1492	5.5	5.5	5.5	1.2	1550	chrX	20377273	intergenic	not near genes	chrX	20378048	intergenic	not near genes	chrX	20378823	intergenic	not near genes	chrX_8_20375001	chrX_20375001	RAL-307_125b
4143	chrX	20836742	20836749	chrX	20844375	20844378	roo	7	7646	1.5	12.0	6.8	0.9	7636	chrX	20836742	intron	shakB -	chrX	20840560	intron	shakB -	chrX	20844378	intron	shakB -	chrX_7_20840001	chrX_20840001	RAL-307_125b
4144	chrX	20836750	20836757	chrX	20844347	20844388	roo	6	7638	1.0	7.0	4.0	1.2	7638	chrX	20836750	intron	shakB -	chrX	20840569	intron	shakB -	chrX	20844388	intron	shakB -	chrX_6_20840001	chrX_20840001	RAL-307_125b
4148	chrX	20940681	20940686	chrX	20942200	20942205	hobo	4	1519	12.5	3.5	8.0	0.4	1524	chrX	20940681	intergenic	not near genes	chrX	20941443	intergenic	not near genes	chrX	20942205	intergenic	not near genes	chrX_4_20940001	chrX_20940001	RAL-307_125b
4149	chrX	20940687	20940725	chrX	20942199	20942228	hobo	10	1516	11.0	3.0	7.0	1.2	1541	chrX	20940687	intergenic	not near genes	chrX	20941458	intergenic	not near genes	chrX	20942228	intergenic	not near genes	chrX_10_20940001	chrX_20940001	RAL-307_125b
4152	chrX	20956950	20956983	chrX	20962442	20962475	I-element	6	5492	0.0	9.0	4.5	1.1	5525	chrX	20956950	intergenic	not near genes	chrX	20959712	intergenic	not near genes	chrX	20962475	intergenic	Ser6 -	chrX_6_20955001	chrX_20955001	RAL-307_125b
4153	chrX	20956984	20957004	chrX	20962434	20962496	I-element	8	5482	0.0	7.5	3.8	1.7	5512	chrX	20956984	intergenic	not near genes	chrX	20959740	intergenic	not near genes	chrX	20962496	intergenic	Ser6 -	chrX_8_20955001	chrX_20955001	RAL-307_125b
4157	chrX	21061819	21061876	chrX	21062354	21062411	roo	20	532	10.0	6.5	8.2	2.2	592	chrX	21061819	intron	bves +	chrX	21062115	intron	bves +	chrX	21062411	intron,3` UTR	bves +,CG32512 -	chrX_20_21060001	chrX_21060001	RAL-307_125b
4158	chrX	21061879	21061886	chrX	21062349	21062421	roo	4	519	8.0	5.0	6.5	0.5	542	chrX	21061879	intron	bves +	chrX	21062150	intron	bves +	chrX	21062421	intron,3` UTR	bves +,CG32512 -	chrX_4_21060001	chrX_21060001	RAL-307_125b
4162	chrX	21086087	21086152	chrX	21087165	21087226	jockey	38	1075	11.0	10.5	10.8	3.2	1139	chrX	21086087	intergenic	not near genes	chrX	21086656	intergenic	not near genes	chrX	21087226	intergenic	not near genes	chrX_38_21085001	chrX_21085001	RAL-307_125b
4172	chrX	21458650	21458726	chrX	21464136	21464212	Ivk	19	5486	9.5	5.5	7.5	2.2	5562	chrX	21458650	intergenic	not near genes	chrX	21461431	intergenic	not near genes	chrX	21464212	intergenic	not near genes	chrX_19_21460001	chrX_21460001	RAL-307_125b
4173	chrX	21474369	21474432	chrX	21474785	21474848	1731	24	414	7.0	7.0	7.0	3.0	479	chrX	21474369	intergenic	not near genes	chrX	21474608	intergenic	not near genes	chrX	21474848	intergenic	not near genes	chrX_24_21470001	chrX_21470001	RAL-307_125b
4180	chrX	21595542	21595571	chrX	21598646	21598675	micropia	12	3102	13.0	10.5	11.8	0.9	3133	chrX	21595542	intergenic	not near genes	chrX	21597108	intergenic	not near genes	chrX	21598675	intergenic	not near genes	chrX_12_21595001	chrX_21595001	RAL-307_125b
4186	chrX	22522589	22522655	chrX	22525457	22525475	NOF	15	2866	5.5	8.0	6.8	1.9	2886	chrX	22522589	intron	CG17600 +	chrX	22524032	intron	CG17600 +	chrX	22525475	intron	CG17600 +	chrX_15_22520001	chrX_22520001	RAL-307_125b
4187	chrX	22564570	22564574	chrX	22575092	22575143	jockey	9	10528	28.5	12.5	20.5	0.4	10573	chrX	22564570	intergenic	not near genes	chrX	22569856	intergenic	not near genes	chrX	22575143	intergenic	not near genes	chrX_9_22565001	chrX_22565001	RAL-307_125b
4192	chrX	22697454	22697521	chrX	22701801	22701867	Juan	25	4343	5.0	12.5	8.8	2.6	4413	chrX	22697454	intron	CR44997 +	chrX	22699660	intron	CR44997 +	chrX	22701867	intron	CR44997 +	chrX_25_22695001	chrX_22695001	RAL-307_125b
4194	chrX	22771459	22771524	chrX	22774800	22774840	297	8	3335	9.0	6.0	7.5	0.9	3381	chrX	22771459	intron	CR44997 +	chrX	22773150	intron	CR44997 +	chrX	22774840	intron	CR44997 +	chrX_8_22770001	chrX_22770001	RAL-307_125b
4196	chrX	22811955	22812005	chrX	22816777	22816827	F-element	19	4820	9.5	6.0	7.8	2.2	4872	chrX	22811955	intergenic	CG12446 -	chrX	22814391	intergenic	not near genes	chrX	22816827	intergenic	not near genes	chrX_19_22810001	chrX_22810001	RAL-307_125b
4198	chrX	22838557	22838568	chrX	22838687	22838698	INE-1	6	129	13.0	10.0	11.5	0.5	141	chrX	22838557	intron,intron	fog -,CG42346 +	chrX	22838628	intron,intron	fog -,CG42346 +	chrX	22838698	intron,intron	fog -,CG42346 +	chrX_6_22835001	chrX_22835001	RAL-307_125b
4205	chrX	22967343	22967511	chrX	23154544	23154686	diver	11	187198	0.5	25.5	13.0	0.8	187343	chrX	22967343	intergenic	not near genes	chrX	23061014	intergenic	not near genes	chrX	23154686	intergenic	not near genes	chrX_11_23060001	chrX_23060001	RAL-307_125b
4206	chrX	22987057	22987126	chrX	22989766	22989813	Burdock	14	2703	4.5	6.0	5.2	2.3	2756	chrX	22987057	intron,intron	stnA -,stnB -	chrX	22988435	intron,intron	stnA -,stnB -	chrX	22989813	intron,intron	stnA -,stnB -	chrX_14_22985001	chrX_22985001	RAL-307_125b
4208	chrX	22996268	22996336	chrX	23003550	23003609	roo	20	7279	6.0	10.0	8.0	2.2	7341	chrX	22996268	intron,intron	stnA -,stnB -	chrX	22999938	intron,intron	stnA -,stnB -	chrX	23003609	intron,intron	stnA -,stnB -	chrX_20_22995001	chrX_22995001	RAL-307_125b
4209	chrX	23036343	23036409	chrX	23037794	23037860	pogo	35	1450	7.5	9.5	8.5	3.7	1517	chrX	23036343	intron	CG12061 +	chrX	23037102	intron	CG12061 +	chrX	23037860	intron	CG12061 +	chrX_35_23035001	chrX_23035001	RAL-307_125b
4211	chrX	22967520	22967529	chrX	23154545	23154554	diver	5	187025	7.5	26.5	17.0	0.3	187034	chrX	22967520	intergenic	not near genes	chrX	23061037	intergenic	not near genes	chrX	23154554	intergenic	not near genes	chrX_5_23060001	chrX_23060001	RAL-307_125b