SV#	Chr_5p	Chr_coord_5p_start	Chr_coord_5p_end	Chr_3p	Chr_coord_3p_start	Chr_coord_3p_end	repName	Reads_collapsed	avg_del_len	RefGen_3prime	Refgen_5prime	RefGen_Avg	Coverage_Ratio	size	Chr_5p	Chr_coord_5p	classification_5p	comment_5p	Chr_mid	Chr_coord_mid	classification_mid	comment_mid	Chr_3p	Chr_coord_3p	classification_3p	comment_3p	depletion_code	loci_code	libname
4	chr2L	47440	47459	chr2L	52570	52589	jockey	27	5129	48.5	24.0	36.2	0.7	5149	chr2L	47440	intron	Cda5 -	chr2L	50014	intron	Cda5 -	chr2L	52589	intron	Cda5 -	chr2L_27_50001	chr2L_50001	RAL-307_100b
5	chr2L	47461	47486	chr2L	52569	52611	jockey	26	5124	38.5	23.0	30.8	0.8	5150	chr2L	47461	intron	Cda5 -	chr2L	50036	intron	Cda5 -	chr2L	52611	intron	Cda5 -	chr2L_26_50001	chr2L_50001	RAL-307_100b
12	chr2L	347863	347918	chr2L	355388	355443	blood	42	7523	13.0	17.0	15.0	2.6	7580	chr2L	347863	3` UTR	Plc21C +	chr2L	351653	intron	Plc21C +	chr2L	355443	3` UTR	Plc21C +	chr2L_42_350001	chr2L_350001	RAL-307_100b
16	chr2L	686918	686951	chr2L	695958	696001	roo	36	9058	10.5	10.0	10.2	3.2	9083	chr2L	686918	intron	ds -	chr2L	691460	intron	ds -	chr2L	696001	intron	ds -	chr2L_36_690001	chr2L_690001	RAL-307_100b
18	chr2L	770444	770452	chr2L	772250	772258	Bari1	9	1806	37.0	21.0	29.0	0.3	1814	chr2L	770444	intergenic	not near genes	chr2L	771351	intergenic	not near genes	chr2L	772258	intergenic	CR44614 +	chr2L_9_770001	chr2L_770001	RAL-307_100b
19	chr2L	770453	770494	chr2L	772244	772290	Bari1	45	1801	12.0	18.0	15.0	2.8	1837	chr2L	770453	intergenic	not near genes	chr2L	771372	intergenic	not near genes	chr2L	772290	intergenic	CR44614 +	chr2L_45_770001	chr2L_770001	RAL-307_100b
29	chr2L	976853	976913	chr2L	984514	984573	roo	37	7655	13.0	13.0	13.0	2.6	7720	chr2L	976853	intergenic	not near genes	chr2L	980713	intergenic	not near genes	chr2L	984573	intergenic	not near genes	chr2L_37_980001	chr2L_980001	RAL-307_100b
30	chr2L	996697	996748	chr2L	1005817	1005868	roo	30	9118	2.5	8.5	5.5	4.6	9171	chr2L	996697	intergenic	not near genes	chr2L	1001282	intergenic	not near genes	chr2L	1005868	intergenic	not near genes	chr2L_30_1000001	chr2L_1000001	RAL-307_100b
39	chr2L	1220105	1220160	chr2L	1227596	1227651	blood	47	7489	15.5	15.5	15.5	2.8	7546	chr2L	1220105	intron	CG42329 +	chr2L	1223878	intron	CG42329 +	chr2L	1227651	intron	CG42329 +	chr2L_47_1220001	chr2L_1220001	RAL-307_100b
40	chr2L	1301750	1301782	chr2L	1302312	1302346	gypsy	8	561	0.0	28.0	14.0	0.5	596	chr2L	1301750	intergenic	not near genes	chr2L	1302048	intergenic	not near genes	chr2L	1302346	intergenic	not near genes	chr2L_8_1300001	chr2L_1300001	RAL-307_100b
51	chr2L	1570667	1570716	chr2L	1573564	1573613	F-element	51	2895	17.5	21.5	19.5	2.5	2946	chr2L	1570667	intron	haf +	chr2L	1572140	intron	haf +	chr2L	1573613	intron	haf +	chr2L_51_1570001	chr2L_1570001	RAL-307_100b
54	chr2L	1678954	1678986	chr2L	1686444	1686469	blood	30	7488	21.0	15.5	18.2	1.6	7515	chr2L	1678954	intron	chinmo +	chr2L	1682712	intron	chinmo +	chr2L	1686469	intron	chinmo +	chr2L_30_1680001	chr2L_1680001	RAL-307_100b
55	chr2L	1678987	1679005	chr2L	1686440	1686475	blood	19	7484	11.5	14.5	13.0	1.4	7488	chr2L	1678987	intron	chinmo +	chr2L	1682731	intron	chinmo +	chr2L	1686475	intron	chinmo +	chr2L_19_1680001	chr2L_1680001	RAL-307_100b
57	chr2L	1711338	1711389	chr2L	1711679	1711692	mdg3	58	343	16.5	16.5	16.5	3.3	354	chr2L	1711338	3` UTR,3` UTR	mRpL48 +,frtz -	chr2L	1711515	3` UTR	frtz -	chr2L	1711692	3` UTR	frtz -	chr2L_58_1710001	chr2L_1710001	RAL-307_100b
78	chr2L	2100375	2100387	chr2L	2109529	2109552	roo	16	9167	35.5	24.0	29.8	0.5	9177	chr2L	2100375	intron	dpr3 -	chr2L	2104964	intron	dpr3 -	chr2L	2109552	intron	dpr3 -	chr2L_16_2100001	chr2L_2100001	RAL-307_100b
79	chr2L	2100388	2100408	chr2L	2109524	2109549	roo	15	9160	20.0	21.5	20.8	0.7	9161	chr2L	2100388	intron	dpr3 -	chr2L	2104968	intron	dpr3 -	chr2L	2109549	intron	dpr3 -	chr2L_15_2100001	chr2L_2100001	RAL-307_100b
80	chr2L	2112086	2112145	chr2L	2119773	2119812	opus	20	7673	3.0	16.5	9.8	1.9	7726	chr2L	2112086	intergenic	not near genes	chr2L	2115949	intergenic	not near genes	chr2L	2119812	intergenic	not near genes	chr2L_20_2115001	chr2L_2115001	RAL-307_100b
88	chr2L	2294017	2294075	chr2L	2299247	2299289	copia	40	5219	7.5	18.0	12.8	2.9	5272	chr2L	2294017	intergenic	not near genes	chr2L	2296653	intergenic	not near genes	chr2L	2299289	intergenic	not near genes	chr2L_40_2295001	chr2L_2295001	RAL-307_100b
102	chr2L	2565529	2565561	chr2L	2571627	2571659	297	29	6096	12.0	22.0	17.0	1.6	6130	chr2L	2565529	exon	Cyp309a2 -	chr2L	2568594	intron	Cyp309a2 -	chr2L	2571659	exon	Cyp309a2 -	chr2L_29_2565001	chr2L_2565001	RAL-307_100b
105	chr2L	2661177	2661201	chr2L	2663033	2663064	I-element	12	1856	36.5	17.0	26.8	0.4	1887	chr2L	2661177	intergenic	not near genes	chr2L	2662120	intergenic	not near genes	chr2L	2663064	intergenic	not near genes	chr2L_12_2660001	chr2L_2660001	RAL-307_100b
106	chr2L	2661205	2661220	chr2L	2663032	2663056	I-element	10	1845	22.0	16.5	19.2	0.5	1851	chr2L	2661205	intergenic	not near genes	chr2L	2662130	intergenic	not near genes	chr2L	2663056	intergenic	not near genes	chr2L_10_2660001	chr2L_2660001	RAL-307_100b
107	chr2L	2661221	2661232	chr2L	2663030	2663070	I-element	21	1837	17.0	15.5	16.2	1.2	1849	chr2L	2661221	intergenic	not near genes	chr2L	2662146	intergenic	not near genes	chr2L	2663070	intergenic	not near genes	chr2L_21_2660001	chr2L_2660001	RAL-307_100b
114	chr2L	2772587	2772627	chr2L	2779196	2779196	297	30	6604	15.0	18.0	16.5	1.7	6609	chr2L	2772587	3` UTR	Syt1 -	chr2L	2775892	intron	Syt1 -	chr2L	2779196	3` UTR	Syt1 -	chr2L_30_2775001	chr2L_2775001	RAL-307_100b
123	chr2L	3073008	3073033	chr2L	3078236	3078261	copia	27	5228	30.0	15.0	22.5	1.1	5253	chr2L	3073008	intron	toc -	chr2L	3075634	intron	toc -	chr2L	3078261	intron	toc -	chr2L_27_3075001	chr2L_3075001	RAL-307_100b
124	chr2L	3073034	3073060	chr2L	3078232	3078288	copia	29	5226	14.0	13.5	13.8	2.0	5254	chr2L	3073034	intron	toc -	chr2L	3075661	intron	toc -	chr2L	3078288	intron	toc -	chr2L_29_3075001	chr2L_3075001	RAL-307_100b
135	chr2L	3202719	3202723	chr2L	3210173	3210177	mdg1	5	7454	33.0	1.0	17.0	0.3	7458	chr2L	3202719	intergenic	not near genes	chr2L	3206448	intergenic	not near genes	chr2L	3210177	intergenic	CR45336 +	chr2L_5_3205001	chr2L_3205001	RAL-307_100b
136	chr2L	3202724	3202770	chr2L	3210170	3210224	mdg1	32	7452	11.5	1.0	6.2	4.4	7500	chr2L	3202724	intergenic	not near genes	chr2L	3206474	intergenic	not near genes	chr2L	3210224	intergenic	CR45336 +	chr2L_32_3205001	chr2L_3205001	RAL-307_100b
137	chr2L	3251470	3251526	chr2L	3259060	3259104	springer	47	7588	7.0	16.0	11.5	3.8	7634	chr2L	3251470	intergenic	not near genes	chr2L	3255287	intergenic	not near genes	chr2L	3259104	intergenic	not near genes	chr2L_47_3255001	chr2L_3255001	RAL-307_100b
141	chr2L	3388576	3388630	chr2L	3388839	3388896	pogo	49	265	12.5	14.5	13.5	3.4	320	chr2L	3388576	intergenic	CG42460 -	chr2L	3388736	intergenic	CG42460 -	chr2L	3388896	intergenic	CG42460 -,CR44791 +	chr2L_49_3385001	chr2L_3385001	RAL-307_100b
159	chr2L	3649764	3649816	chr2L	3654992	3655041	copia	34	5227	15.0	18.0	16.5	1.9	5277	chr2L	3649764	intron	for -	chr2L	3652402	intron	for -	chr2L	3655041	intron	for -	chr2L_34_3650001	chr2L_3650001	RAL-307_100b
177	chr2L	4066020	4066052	chr2L	4068870	4068897	Juan	30	2846	21.5	17.0	19.2	1.5	2877	chr2L	4066020	intron	ed +	chr2L	4067458	intron	ed +	chr2L	4068897	intron	ed +	chr2L_30_4065001	chr2L_4065001	RAL-307_100b
178	chr2L	4066053	4066058	chr2L	4068864	4068908	Juan	6	2839	20.0	15.5	17.8	0.3	2855	chr2L	4066053	intron	ed +	chr2L	4067480	intron	ed +	chr2L	4068908	intron	ed +	chr2L_6_4065001	chr2L_4065001	RAL-307_100b
184	chr2L	4181295	4181303	chr2L	4183939	4183960	Burdock	6	2652	16.5	41.0	28.8	0.2	2665	chr2L	4181295	intergenic	not near genes	chr2L	4182628	intergenic	not near genes	chr2L	4183960	intergenic	not near genes	chr2L_6_4180001	chr2L_4180001	RAL-307_100b
192	chr2L	4601679	4601737	chr2L	4609145	4609203	mdg1	61	7464	17.0	16.5	16.8	3.4	7524	chr2L	4601679	intron	dp -	chr2L	4605441	intron	dp -	chr2L	4609203	intron	dp -	chr2L_61_4605001	chr2L_4605001	RAL-307_100b
193	chr2L	4661818	4661856	chr2L	4669423	4669454	opus	29	7602	15.0	38.5	26.8	1.0	7636	chr2L	4661818	intergenic	not near genes	chr2L	4665636	intergenic	not near genes	chr2L	4669454	intergenic	not near genes	chr2L_29_4665001	chr2L_4665001	RAL-307_100b
196	chr2L	4918148	4918157	chr2L	4923246	4923255	jockey	12	5098	32.0	1.5	16.8	0.7	5107	chr2L	4918148	intron	hoe1 -	chr2L	4920702	intron	hoe1 -	chr2L	4923255	intron	hoe1 -	chr2L_12_4920001	chr2L_4920001	RAL-307_100b
197	chr2L	4918158	4918204	chr2L	4923242	4923330	jockey	22	5122	11.5	1.5	6.5	2.9	5172	chr2L	4918158	intron	hoe1 -	chr2L	4920744	intron	hoe1 -	chr2L	4923330	intron	hoe1 -	chr2L_22_4920001	chr2L_4920001	RAL-307_100b
200	chr2L	4953487	4953523	chr2L	4953753	4953777	pogo	25	264	22.0	8.0	15.0	1.6	290	chr2L	4953487	intergenic	Jon25Bii -	chr2L	4953632	intergenic	Jon25Bii -	chr2L	4953777	intergenic	not near genes	chr2L_25_4950001	chr2L_4950001	RAL-307_100b
211	chr2L	5342748	5342801	chr2L	5345153	5345160	Doc	37	2403	15.5	16.0	15.8	2.2	2412	chr2L	5342748	intergenic	not near genes	chr2L	5343954	intergenic	not near genes	chr2L	5345160	intergenic	not near genes	chr2L_37_5340001	chr2L_5340001	RAL-307_100b
232	chr2L	5827687	5827693	chr2L	5836720	5836726	roo	5	9032	45.5	23.5	34.5	0.1	9039	chr2L	5827687	intron	TrissinR +	chr2L	5832206	intron	TrissinR +	chr2L	5836726	intron	TrissinR +	chr2L_5_5830001	chr2L_5830001	RAL-307_100b
233	chr2L	5827697	5827721	chr2L	5836718	5836754	roo	25	9029	29.0	22.5	25.8	0.9	9057	chr2L	5827697	intron	TrissinR +	chr2L	5832226	intron	TrissinR +	chr2L	5836754	intron	TrissinR +	chr2L_25_5830001	chr2L_5830001	RAL-307_100b
234	chr2L	5827723	5827739	chr2L	5836714	5836731	roo	14	9023	19.5	19.5	19.5	0.7	9008	chr2L	5827723	intron	TrissinR +	chr2L	5832227	intron	TrissinR +	chr2L	5836731	intron	TrissinR +	chr2L_14_5830001	chr2L_5830001	RAL-307_100b
260	chr2L	6363130	6363155	chr2L	6366071	6366102	Burdock	27	2945	28.0	19.5	23.8	1.1	2972	chr2L	6363130	intergenic	not near genes	chr2L	6364616	intergenic	not near genes	chr2L	6366102	intergenic	not near genes	chr2L_27_6360001	chr2L_6360001	RAL-307_100b
261	chr2L	6363158	6363183	chr2L	6366070	6366112	Burdock	23	2938	13.0	19.0	16.0	1.4	2954	chr2L	6363158	intergenic	not near genes	chr2L	6364635	intergenic	not near genes	chr2L	6366112	intergenic	not near genes	chr2L_23_6360001	chr2L_6360001	RAL-307_100b
262	chr2L	6426835	6426866	chr2L	6445117	6445151	roo	33	18283	29.0	25.0	27.0	1.2	18316	chr2L	6426835	3` UTR	CG9527 -	chr2L	6435993	intron	CG9527 -	chr2L	6445151	exon	CG9527 -	chr2L_33_6435001	chr2L_6435001	RAL-307_100b
263	chr2L	6426867	6426889	chr2L	6445116	6445120	roo	27	18277	15.0	24.5	19.8	1.3	18253	chr2L	6426867	3` UTR	CG9527 -	chr2L	6435994	intron	CG9527 -	chr2L	6445120	exon	CG9527 -	chr2L_27_6435001	chr2L_6435001	RAL-307_100b
270	chr2L	6876775	6876809	chr2L	6882964	6883018	diver	18	6203	18.5	7.5	13.0	1.3	6243	chr2L	6876775	intron	Nlg2 +	chr2L	6879896	intron	Nlg2 +	chr2L	6883018	intron	Nlg2 +	chr2L_18_6875001	chr2L_6875001	RAL-307_100b
274	chr2L	6991393	6991435	chr2L	6998552	6998583	HMS-Beagle	7	7153	0.0	11.0	5.5	1.1	7190	chr2L	6991393	intron	uif -	chr2L	6994988	intron	uif -	chr2L	6998583	intron	uif -	chr2L_7_6990001	chr2L_6990001	RAL-307_100b
285	chr2L	7343302	7343310	chr2L	7350443	7350451	roo	7	7141	37.0	26.0	31.5	0.2	7149	chr2L	7343302	intron	Wnt6 +	chr2L	7346876	intron	Wnt6 +	chr2L	7350451	intron	Wnt6 +	chr2L_7_7345001	chr2L_7345001	RAL-307_100b
286	chr2L	7343311	7343357	chr2L	7350442	7350496	roo	53	7134	13.5	23.0	18.2	2.8	7185	chr2L	7343311	intron	Wnt6 +	chr2L	7346904	intron	Wnt6 +	chr2L	7350496	intron	Wnt6 +	chr2L_53_7345001	chr2L_7345001	RAL-307_100b
303	chr2L	7579167	7579186	chr2L	7579382	7579401	BS	5	215	9.0	0.5	4.8	0.9	234	chr2L	7579167	intergenic	RapGAP1 -	chr2L	7579284	intergenic	RapGAP1 -	chr2L	7579401	intergenic	RapGAP1 -	chr2L_5_7575001	chr2L_7575001	RAL-307_100b
321	chr2L	7959016	7959071	chr2L	7960452	7960507	pogo	55	1432	12.0	15.0	13.5	3.8	1491	chr2L	7959016	intron	Snoo -	chr2L	7959762	intron	Snoo -	chr2L	7960507	intron	Snoo -	chr2L_55_7955001	chr2L_7955001	RAL-307_100b
322	chr2L	7977066	7977113	chr2L	7984067	7984109	297	25	6995	8.0	16.0	12.0	1.9	7043	chr2L	7977066	intron	Snoo -	chr2L	7980588	intron	Snoo -	chr2L	7984109	intron,5` UTR	Snoo -,CG7231 +	chr2L_25_7980001	chr2L_7980001	RAL-307_100b
324	chr2L	8013593	8013608	chr2L	8018822	8018837	copia	9	5228	27.0	0.0	13.5	0.6	5244	chr2L	8013593	intron	Tg +	chr2L	8016215	intron	Tg +	chr2L	8018837	intron	Tg +	chr2L_9_8015001	chr2L_8015001	RAL-307_100b
325	chr2L	8013644	8013647	chr2L	8023604	8023607	copia	4	9960	9.0	20.0	14.5	0.3	9963	chr2L	8013644	intron	Tg +	chr2L	8018626	intron	Tg +	chr2L	8023607	intron	Tg +	chr2L_4_8015001	chr2L_8015001	RAL-307_100b
326	chr2L	8018818	8018836	chr2L	8023627	8023645	Doc	14	4808	0.0	28.5	14.2	0.9	4827	chr2L	8018818	intron	Tg +	chr2L	8021232	intron	Tg +	chr2L	8023645	intron	Tg +	chr2L_14_8020001	chr2L_8020001	RAL-307_100b
339	chr2L	8452398	8452454	chr2L	8461593	8461613	roo	61	9193	20.0	17.5	18.8	3.1	9215	chr2L	8452398	intron	fu12 -	chr2L	8457006	intron	fu12 -	chr2L	8461613	intron	fu12 -	chr2L_61_8455001	chr2L_8455001	RAL-307_100b
344	chr2L	8594442	8594492	chr2L	8601521	8601558	297	24	7078	13.5	13.0	13.2	1.7	7116	chr2L	8594442	intron,3` UTR	Sema-1a +,CR43855 -	chr2L	8598000	intron	Sema-1a +	chr2L	8601558	intron	Sema-1a +	chr2L_24_8595001	chr2L_8595001	RAL-307_100b
354	chr2L	8723092	8723126	chr2L	8731492	8731528	Tirant	37	8401	20.5	15.0	17.8	2.0	8436	chr2L	8723092	intron	raw -	chr2L	8727310	intron	raw -	chr2L	8731528	intron	raw -	chr2L_37_8725001	chr2L_8725001	RAL-307_100b
355	chr2L	8723128	8723144	chr2L	8731490	8731512	Tirant	21	8396	13.5	14.5	14.0	1.4	8384	chr2L	8723128	intron	raw -	chr2L	8727320	intron	raw -	chr2L	8731512	intron	raw -	chr2L_21_8725001	chr2L_8725001	RAL-307_100b
361	chr2L	9000252	9000306	chr2L	9007787	9007841	roo	37	7531	20.5	11.0	15.8	2.2	7589	chr2L	9000252	intergenic	Try29F +	chr2L	9004046	intergenic	not near genes	chr2L	9007841	intergenic	not near genes	chr2L_37_9000001	chr2L_9000001	RAL-307_100b
370	chr2L	9217967	9218004	chr2L	9222779	9222819	Doc	17	4811	10.5	0.0	5.2	2.7	4852	chr2L	9217967	intron	tai +	chr2L	9220393	intron	tai +	chr2L	9222819	intron	tai +	chr2L_17_9220001	chr2L_9220001	RAL-307_100b
390	chr2L	9393474	9393531	chr2L	9396466	9396518	jockey	57	2989	15.5	15.5	15.5	3.5	3044	chr2L	9393474	intron	Shawl -	chr2L	9394996	intron	Shawl -	chr2L	9396518	intron	Shawl -	chr2L_57_9390001	chr2L_9390001	RAL-307_100b
404	chr2L	9973702	9973758	chr2L	9980846	9980902	HMS-Beagle	67	7138	18.0	24.0	21.0	3.0	7200	chr2L	9973702	intergenic	not near genes	chr2L	9977302	intergenic	not near genes	chr2L	9980902	intergenic	not near genes	chr2L_67_9975001	chr2L_9975001	RAL-307_100b
417	chr2L	10156299	10156323	chr2L	10163794	10163817	blood	17	7494	32.5	17.5	25.0	0.7	7518	chr2L	10156299	intron,3` UTR	CG44153 -,CG4839 +	chr2L	10160058	intron	CG44153 -	chr2L	10163817	intron	CG44153 -	chr2L_17_10160001	chr2L_10160001	RAL-307_100b
418	chr2L	10156325	10156353	chr2L	10163790	10163839	blood	27	7488	15.0	16.0	15.5	1.6	7514	chr2L	10156325	intron,3` UTR	CG44153 -,CG4839 +	chr2L	10160082	intron	CG44153 -	chr2L	10163839	intron	CG44153 -	chr2L_27_10160001	chr2L_10160001	RAL-307_100b
444	chr2L	10592820	10592872	chr2L	10600505	10600559	opus	59	7683	5.5	13.5	9.5	5.6	7739	chr2L	10592820	intron	Trim9 +	chr2L	10596690	intron	Trim9 +	chr2L	10600559	intron	Trim9 +	chr2L_59_10595001	chr2L_10595001	RAL-307_100b
460	chr2L	10862842	10862850	chr2L	10864456	10864489	Rt1c	10	1634	27.5	19.0	23.2	0.4	1647	chr2L	10862842	3` UTR	CR43807 -	chr2L	10863666	intron	CR43807 -	chr2L	10864489	3` UTR	CR43807 -	chr2L_10_10860001	chr2L_10860001	RAL-307_100b
461	chr2L	10862852	10862883	chr2L	10864454	10864457	Rt1c	27	1620	12.0	17.5	14.8	1.7	1605	chr2L	10862852	3` UTR	CR43807 -	chr2L	10863654	intron	CR43807 -	chr2L	10864457	intron	CR43807 -	chr2L_27_10860001	chr2L_10860001	RAL-307_100b
462	chr2L	10876551	10876567	chr2L	10883632	10883647	297	7	7080	19.5	23.0	21.2	0.3	7096	chr2L	10876551	intergenic	not near genes	chr2L	10880099	intergenic	not near genes	chr2L	10883647	intergenic	not near genes	chr2L_7_10880001	chr2L_10880001	RAL-307_100b
465	chr2L	10946926	10946976	chr2L	10956166	10956209	roo	50	9237	16.0	27.0	21.5	2.2	9283	chr2L	10946926	intron	dpr2 -	chr2L	10951568	intron	dpr2 -	chr2L	10956209	intron	dpr2 -	chr2L_50_10950001	chr2L_10950001	RAL-307_100b
469	chr2L	11315243	11315270	chr2L	11317672	11317699	G2	22	2427	14.0	11.5	12.8	1.6	2456	chr2L	11315243	intergenic	not near genes	chr2L	11316471	intergenic	not near genes	chr2L	11317699	intergenic	not near genes	chr2L_22_11315001	chr2L_11315001	RAL-307_100b
485	chr2L	11540566	11540589	chr2L	11547993	11548001	Tabor	14	7426	15.0	12.5	13.8	0.9	7435	chr2L	11540566	intergenic	not near genes	chr2L	11544284	intergenic	not near genes	chr2L	11548001	intergenic	not near genes	chr2L_14_11540001	chr2L_11540001	RAL-307_100b
486	chr2L	11540591	11540616	chr2L	11547988	11548032	Tabor	19	7425	8.0	11.5	9.8	1.8	7441	chr2L	11540591	intergenic	not near genes	chr2L	11544312	intergenic	not near genes	chr2L	11548032	intergenic	not near genes	chr2L_19_11540001	chr2L_11540001	RAL-307_100b
488	chr2L	11563619	11563623	chr2L	11568848	11568852	copia	4	5229	32.0	21.5	26.8	0.1	5233	chr2L	11563619	intergenic	not near genes	chr2L	11566236	intergenic	not near genes	chr2L	11568852	intergenic	not near genes	chr2L_4_11565001	chr2L_11565001	RAL-307_100b
489	chr2L	11563624	11563669	chr2L	11568843	11568887	copia	33	5226	13.0	20.0	16.5	1.9	5263	chr2L	11563624	intergenic	not near genes	chr2L	11566256	intergenic	not near genes	chr2L	11568887	intergenic	not near genes	chr2L_33_11565001	chr2L_11565001	RAL-307_100b
492	chr2L	11614029	11614045	chr2L	11615549	11615565	hopper2	7	1516	30.5	10.5	20.5	0.3	1536	chr2L	11614029	intron	kek2 +	chr2L	11614797	intron	kek2 +	chr2L	11615565	intron	kek2 +	chr2L_7_11610001	chr2L_11610001	RAL-307_100b
493	chr2L	11614049	11614085	chr2L	11615547	11615598	hopper2	28	1510	13.5	10.0	11.8	2.2	1549	chr2L	11614049	intron	kek2 +	chr2L	11614824	intron	kek2 +	chr2L	11615598	intron	kek2 +	chr2L_28_11610001	chr2L_11610001	RAL-307_100b
500	chr2L	11713483	11713509	chr2L	11720974	11721000	blood	24	7487	32.0	15.5	23.8	1.0	7517	chr2L	11713483	intergenic	not near genes	chr2L	11717242	intergenic	not near genes	chr2L	11721000	intergenic	CR44143 +	chr2L_24_11715001	chr2L_11715001	RAL-307_100b
501	chr2L	11713510	11713539	chr2L	11720973	11721032	blood	28	7486	19.0	15.0	17.0	1.6	7522	chr2L	11713510	intergenic	not near genes	chr2L	11717271	intergenic	not near genes	chr2L	11721032	intergenic	CR44143 +	chr2L_28_11715001	chr2L_11715001	RAL-307_100b
508	chr2L	12067307	12067355	chr2L	12074384	12074432	297	40	7075	15.5	15.0	15.2	2.5	7125	chr2L	12067307	intergenic	not near genes	chr2L	12070870	intergenic	not near genes	chr2L	12074432	intergenic	not near genes	chr2L_40_12070001	chr2L_12070001	RAL-307_100b
525	chr2L	12558306	12558319	chr2L	12565449	12565473	HMS-Beagle	12	7147	34.5	11.0	22.8	0.5	7167	chr2L	12558306	intergenic	not near genes	chr2L	12561890	intergenic	not near genes	chr2L	12565473	intergenic	not near genes	chr2L_12_12560001	chr2L_12560001	RAL-307_100b
526	chr2L	12558321	12558352	chr2L	12565447	12565506	HMS-Beagle	37	7149	12.0	11.0	11.5	3.0	7185	chr2L	12558321	intergenic	not near genes	chr2L	12561914	intergenic	not near genes	chr2L	12565506	intergenic	not near genes	chr2L_37_12560001	chr2L_12560001	RAL-307_100b
531	chr2L	12731034	12731093	chr2L	12735826	12735842	F-element	49	4789	11.0	16.5	13.8	3.3	4808	chr2L	12731034	intron	MRP +	chr2L	12733438	intron	MRP +	chr2L	12735842	intron	MRP +	chr2L_49_12730001	chr2L_12730001	RAL-307_100b
532	chr2L	12739152	12739167	chr2L	12743958	12743973	Doc	12	4805	43.0	23.0	33.0	0.4	4821	chr2L	12739152	exon	MRP +	chr2L	12741562	intron	MRP +	chr2L	12743973	intron	MRP +	chr2L_12_12740001	chr2L_12740001	RAL-307_100b
533	chr2L	12739168	12739198	chr2L	12743955	12744004	Doc	34	4802	24.0	21.0	22.5	1.4	4836	chr2L	12739168	exon	MRP +	chr2L	12741586	intron	MRP +	chr2L	12744004	exon	MRP +	chr2L_34_12740001	chr2L_12740001	RAL-307_100b
536	chr2L	12763809	12763866	chr2L	12764044	12764091	BS	9	233	1.0	0.0	0.5	6.0	282	chr2L	12763809	intergenic	not near genes	chr2L	12763950	intergenic	not near genes	chr2L	12764091	intergenic	not near genes	chr2L_9_12760001	chr2L_12760001	RAL-307_100b
538	chr2L	12781777	12781815	chr2L	12789245	12789277	Quasimodo	28	7464	20.5	19.0	19.8	1.3	7500	chr2L	12781777	intergenic	not near genes	chr2L	12785527	intergenic	not near genes	chr2L	12789277	intergenic	not near genes	chr2L_28_12785001	chr2L_12785001	RAL-307_100b
539	chr2L	12791582	12791612	chr2L	12795282	12795312	F-element	21	3699	24.5	19.5	22.0	0.9	3730	chr2L	12791582	intergenic	not near genes	chr2L	12793447	intergenic	not near genes	chr2L	12795312	intergenic	not near genes	chr2L_21_12790001	chr2L_12790001	RAL-307_100b
540	chr2L	12791614	12791629	chr2L	12795277	12795279	F-element	28	3679	20.0	16.0	18.0	1.5	3665	chr2L	12791614	intergenic	not near genes	chr2L	12793446	intergenic	not near genes	chr2L	12795279	intergenic	not near genes	chr2L_28_12790001	chr2L_12790001	RAL-307_100b
544	chr2L	12861680	12861710	chr2L	12863164	12863202	hobo	32	1489	21.0	19.5	20.2	1.5	1522	chr2L	12861680	intergenic	not near genes	chr2L	12862441	intergenic	not near genes	chr2L	12863202	intergenic	not near genes	chr2L_32_12860001	chr2L_12860001	RAL-307_100b
545	chr2L	12861712	12861731	chr2L	12863163	12863188	hobo	25	1478	11.0	18.5	14.8	1.6	1476	chr2L	12861712	intergenic	not near genes	chr2L	12862450	intergenic	not near genes	chr2L	12863188	intergenic	not near genes	chr2L_25_12860001	chr2L_12860001	RAL-307_100b
546	chr2L	12894010	12894045	chr2L	12895488	12895507	hobo	23	1481	16.5	29.5	23.0	1.0	1497	chr2L	12894010	intergenic	not near genes	chr2L	12894758	intergenic	not near genes	chr2L	12895507	intergenic	not near genes	chr2L_23_12890001	chr2L_12890001	RAL-307_100b
548	chr2L	12933827	12933881	chr2L	12941319	12941373	blood	56	7489	18.0	20.0	19.0	2.8	7546	chr2L	12933827	intergenic	not near genes	chr2L	12937600	intergenic	not near genes	chr2L	12941373	intergenic	not near genes	chr2L_56_12935001	chr2L_12935001	RAL-307_100b
550	chr2L	13036220	13036272	chr2L	13036487	13036532	X-element	44	266	13.0	14.0	13.5	3.0	312	chr2L	13036220	intron	CG9932 -	chr2L	13036376	intron	CG9932 -	chr2L	13036532	intron	CG9932 -	chr2L_44_13035001	chr2L_13035001	RAL-307_100b
554	chr2L	13241942	13241953	chr2L	13244345	13244352	BS	13	2406	24.5	21.5	23.0	0.5	2410	chr2L	13241942	5` UTR	CR45330 +	chr2L	13243147	intron	CR45330 +	chr2L	13244352	5` UTR	CR45330 +	chr2L_13_13240001	chr2L_13240001	RAL-307_100b
560	chr2L	13405630	13405632	chr2L	13410449	13410454	Doc	5	4821	44.0	16.5	30.2	0.2	4824	chr2L	13405630	exon	CG7110 +	chr2L	13408042	intron	CG7110 +	chr2L	13410454	intron	CG7110 +	chr2L_5_13405001	chr2L_13405001	RAL-307_100b
561	chr2L	13405633	13405680	chr2L	13410448	13410490	Doc	32	4817	16.5	16.5	16.5	1.8	4857	chr2L	13405633	exon	CG7110 +	chr2L	13408062	intron	CG7110 +	chr2L	13410490	intron	CG7110 +	chr2L_32_13405001	chr2L_13405001	RAL-307_100b
562	chr2L	13449462	13449496	chr2L	13456897	13456957	Quasimodo	23	7458	8.5	15.0	11.8	1.8	7495	chr2L	13449462	intron,5` UTR	CG42784 +,Hsp60D -	chr2L	13453210	intron	CG42784 +	chr2L	13456957	intron	CG42784 +	chr2L_23_13450001	chr2L_13450001	RAL-307_100b
563	chr2L	13481432	13481454	chr2L	13482064	13482080	jockey	18	630	29.0	29.0	29.0	0.6	648	chr2L	13481432	intron	CG42784 +	chr2L	13481756	intron	CG42784 +	chr2L	13482080	intron	CG42784 +	chr2L_18_13480001	chr2L_13480001	RAL-307_100b
564	chr2L	13481455	13481456	chr2L	13482061	13482088	jockey	7	625	28.0	28.0	28.0	0.2	633	chr2L	13481455	intron	CG42784 +	chr2L	13481772	intron	CG42784 +	chr2L	13482088	intron	CG42784 +	chr2L_7_13480001	chr2L_13480001	RAL-307_100b
565	chr2L	13481457	13481471	chr2L	13482055	13482087	jockey	15	626	22.0	20.5	21.2	0.7	630	chr2L	13481457	intron	CG42784 +	chr2L	13481772	intron	CG42784 +	chr2L	13482087	intron	CG42784 +	chr2L_15_13480001	chr2L_13480001	RAL-307_100b
566	chr2L	13522268	13522291	chr2L	13527593	13527601	Transpac	19	5325	9.5	30.0	19.8	0.9	5333	chr2L	13522268	intron	B4 -	chr2L	13524934	intron	B4 -	chr2L	13527601	intron	B4 -	chr2L_19_13520001	chr2L_13520001	RAL-307_100b
568	chr2L	13560382	13560421	chr2L	13565222	13565267	F-element	25	4844	15.5	16.0	15.8	1.5	4885	chr2L	13560382	intron	kuz +	chr2L	13562824	intron	kuz +	chr2L	13565267	intron	kuz +	chr2L_25_13560001	chr2L_13560001	RAL-307_100b
581	chr2L	13761780	13761835	chr2L	13762915	13762954	Doc	54	1130	16.5	14.5	15.5	3.3	1174	chr2L	13761780	intron	TM9SF4 +	chr2L	13762367	intron	TM9SF4 +	chr2L	13762954	intron	TM9SF4 +	chr2L_54_13760001	chr2L_13760001	RAL-307_100b
584	chr2L	13853063	13853077	chr2L	13862238	13862252	roo	13	9175	30.0	20.5	25.2	0.5	9189	chr2L	13853063	intron	CenG1A +	chr2L	13857658	intron	CenG1A +	chr2L	13862252	intron	CenG1A +	chr2L_13_13855001	chr2L_13855001	RAL-307_100b
585	chr2L	13853085	13853112	chr2L	13862234	13862243	roo	31	9170	19.0	18.0	18.5	1.6	9158	chr2L	13853085	intron	CenG1A +	chr2L	13857664	intron	CenG1A +	chr2L	13862243	intron	CenG1A +	chr2L_31_13855001	chr2L_13855001	RAL-307_100b
622	chr2L	14803852	14803909	chr2L	14809080	14809137	copia	58	5226	11.0	15.5	13.2	4.1	5285	chr2L	14803852	intergenic	not near genes	chr2L	14806494	intergenic	not near genes	chr2L	14809137	intergenic	not near genes	chr2L_58_14805001	chr2L_14805001	RAL-307_100b
625	chr2L	14889927	14889950	chr2L	14890377	14890395	jockey	22	448	26.0	7.5	16.8	1.2	468	chr2L	14889927	intergenic	not near genes	chr2L	14890161	intergenic	not near genes	chr2L	14890395	intergenic	not near genes	chr2L_22_14890001	chr2L_14890001	RAL-307_100b
626	chr2L	14889952	14889987	chr2L	14890376	14890412	jockey	35	446	11.0	7.0	9.0	3.5	460	chr2L	14889952	intergenic	not near genes	chr2L	14890182	intergenic	not near genes	chr2L	14890412	intergenic	not near genes	chr2L_35_14890001	chr2L_14890001	RAL-307_100b
631	chr2L	14984360	14984405	chr2L	14991987	14992020	opus	28	7623	18.0	10.0	14.0	1.9	7660	chr2L	14984360	intron	mol -	chr2L	14988190	intron	mol -	chr2L	14992020	intron	mol -	chr2L_28_14985001	chr2L_14985001	RAL-307_100b
655	chr2L	15446026	15446030	chr2L	15453520	15453524	blood	4	7494	37.0	5.0	21.0	0.2	7498	chr2L	15446026	intergenic	not near genes	chr2L	15449775	intergenic	not near genes	chr2L	15453524	intergenic	not near genes	chr2L_4_15445001	chr2L_15445001	RAL-307_100b
656	chr2L	15446034	15446079	chr2L	15453519	15453573	blood	34	7491	11.5	5.0	8.2	3.7	7539	chr2L	15446034	intergenic	not near genes	chr2L	15449804	intergenic	not near genes	chr2L	15453573	intergenic	not near genes	chr2L_34_15445001	chr2L_15445001	RAL-307_100b
663	chr2L	15586386	15586438	chr2L	15593463	15593515	297	42	7076	12.5	18.5	15.5	2.5	7129	chr2L	15586386	intergenic	not near genes	chr2L	15589950	intergenic	not near genes	chr2L	15593515	intergenic	not near genes	chr2L_42_15585001	chr2L_15585001	RAL-307_100b
669	chr2L	15826870	15826893	chr2L	15829289	15829306	Tabor	27	2419	12.0	28.0	20.0	1.3	2436	chr2L	15826870	intergenic	not near genes	chr2L	15828088	intergenic	not near genes	chr2L	15829306	intergenic	not near genes	chr2L_27_15825001	chr2L_15825001	RAL-307_100b
675	chr2L	15955998	15956058	chr2L	15957490	15957515	hobo	41	1484	16.5	14.0	15.2	2.5	1517	chr2L	15955998	intron	beat-Ib -	chr2L	15956756	intron	beat-Ib -	chr2L	15957515	intron	beat-Ib -	chr2L_41_15955001	chr2L_15955001	RAL-307_100b
680	chr2L	16071771	16071771	chr2L	16217660	16217660	copia	22	145889	65.0	81.5	73.2	0.3	145889	chr2L	16071771	intron	beat-Ia +	chr2L	16144716	intergenic	not near genes	chr2L	16217660	intergenic	not near genes	chr2L_22_16140001	chr2L_16140001	RAL-307_100b
681	chr2L	16141142	16141159	chr2L	16146374	16146391	copia	12	5232	30.5	14.0	22.2	0.5	5249	chr2L	16141142	intergenic	not near genes	chr2L	16143766	intergenic	not near genes	chr2L	16146391	intergenic	not near genes	chr2L_12_16140001	chr2L_16140001	RAL-307_100b
682	chr2L	16141160	16141169	chr2L	16146372	16146401	copia	6	5226	27.5	13.5	20.5	0.3	5241	chr2L	16141160	intergenic	not near genes	chr2L	16143780	intergenic	not near genes	chr2L	16146401	intergenic	not near genes	chr2L_6_16140001	chr2L_16140001	RAL-307_100b
683	chr2L	16141172	16141195	chr2L	16146369	16146422	copia	17	5229	12.5	12.0	12.2	1.3	5250	chr2L	16141172	intergenic	not near genes	chr2L	16143797	intergenic	not near genes	chr2L	16146422	intergenic	not near genes	chr2L_17_16140001	chr2L_16140001	RAL-307_100b
684	chr2L	16153718	16153761	chr2L	16160811	16160854	297	35	7091	13.0	17.0	15.0	2.2	7136	chr2L	16153718	intergenic	not near genes	chr2L	16157286	intergenic	not near genes	chr2L	16160854	intergenic	not near genes	chr2L_35_16155001	chr2L_16155001	RAL-307_100b
686	chr2L	16071771	16071771	chr2L	16217660	16217660	copia	10	145889	65.0	81.5	73.2	0.1	145889	chr2L	16071771	intron	beat-Ia +	chr2L	16144716	intergenic	not near genes	chr2L	16217660	intergenic	not near genes	chr2L_10_16140001	chr2L_16140001	RAL-307_100b
697	chr2L	16280237	16280285	chr2L	16281431	16281481	1360	47	1194	17.5	21.0	19.2	2.3	1244	chr2L	16280237	intron	crp -	chr2L	16280859	intron	crp -	chr2L	16281481	intron	crp -	chr2L_47_16280001	chr2L_16280001	RAL-307_100b
708	chr2L	16511960	16511996	chr2L	16519112	16519148	HMS-Beagle	20	7152	13.0	9.5	11.2	1.6	7188	chr2L	16511960	intron	CG5953 -	chr2L	16515554	intron	CG5953 -	chr2L	16519148	intron	CG5953 -	chr2L_20_16515001	chr2L_16515001	RAL-307_100b
729	chr2L	4894710	4894712	chr2L	16859087	16859089	297	5	11964377	12.5	30.5	21.5	0.2	11964379	chr2L	4894710	intron	CG3036 +	chr2L	10876900	intergenic	not near genes	chr2L	16859089	intergenic	CG31809 -	chr2L_5_10875001	chr2L_10875001	RAL-307_100b
733	chr2L	16958085	16958134	chr2L	16962893	16962947	Doc	37	4811	11.0	15.0	13.0	2.6	4862	chr2L	16958085	intergenic	not near genes	chr2L	16960516	intergenic	not near genes	chr2L	16962947	intergenic	not near genes	chr2L_37_16960001	chr2L_16960001	RAL-307_100b
745	chr2L	17167543	17167596	chr2L	17167809	17167862	pogo	32	265	12.5	11.5	12.0	2.5	319	chr2L	17167543	intron,intron	CG34106 +,beat-IIIa +	chr2L	17167702	intron,intron	CG34106 +,beat-IIIa +	chr2L	17167862	intron,intron	CG34106 +,beat-IIIa +	chr2L_32_17165001	chr2L_17165001	RAL-307_100b
748	chr2L	17199141	17199191	chr2L	17200633	17200683	hobo	33	1491	9.0	8.0	8.5	3.5	1542	chr2L	17199141	intron	beat-IIIc -	chr2L	17199912	intron	beat-IIIc -	chr2L	17200683	intron	beat-IIIc -	chr2L_33_17195001	chr2L_17195001	RAL-307_100b
756	chr2L	17273175	17273212	chr2L	17277983	17278020	F-element	34	4805	21.5	18.0	19.8	1.6	4845	chr2L	17273175	intergenic	not near genes	chr2L	17275598	intergenic	not near genes	chr2L	17278020	intergenic	not near genes	chr2L_34_17275001	chr2L_17275001	RAL-307_100b
757	chr2L	17273214	17273223	chr2L	17277973	17277999	F-element	15	4793	16.5	13.0	14.8	0.9	4785	chr2L	17273214	intergenic	not near genes	chr2L	17275606	intergenic	not near genes	chr2L	17277999	intergenic	not near genes	chr2L_15_17275001	chr2L_17275001	RAL-307_100b
762	chr2L	17431988	17432040	chr2L	17432122	17432172	1360	19	129	2.5	11.5	7.0	2.4	184	chr2L	17431988	intron	Dif -	chr2L	17432080	intron	Dif -	chr2L	17432172	intron	Dif -	chr2L_19_17430001	chr2L_17430001	RAL-307_100b
767	chr2L	17687492	17687520	chr2L	17692262	17692290	F-element	15	4769	20.0	11.5	15.8	0.9	4798	chr2L	17687492	intron	CadN -	chr2L	17689891	intron	CadN -	chr2L	17692290	intron	CadN -	chr2L_15_17685001	chr2L_17685001	RAL-307_100b
770	chr2L	17727852	17727856	chr2L	17729339	17729348	hobo	4	1490	26.0	25.5	25.8	0.1	1496	chr2L	17727852	intron	CadN -	chr2L	17728600	intron	CadN -	chr2L	17729348	intron	CadN -	chr2L_4_17725001	chr2L_17725001	RAL-307_100b
771	chr2L	17727857	17727871	chr2L	17729338	17729355	hobo	16	1486	20.0	25.0	22.5	0.7	1498	chr2L	17727857	intron	CadN -	chr2L	17728606	intron	CadN -	chr2L	17729355	intron	CadN -	chr2L_16_17725001	chr2L_17725001	RAL-307_100b
772	chr2L	17727872	17727879	chr2L	17729337	17729348	hobo	7	1481	15.5	24.5	20.0	0.3	1476	chr2L	17727872	intron	CadN -	chr2L	17728610	intron	CadN -	chr2L	17729348	intron	CadN -	chr2L_7_17725001	chr2L_17725001	RAL-307_100b
775	chr2L	17819897	17819948	chr2L	17825124	17825176	copia	41	5226	14.5	14.5	14.5	2.6	5279	chr2L	17819897	intron	CadN2 -	chr2L	17822536	intron	CadN2 -	chr2L	17825176	intron	CadN2 -	chr2L_41_17820001	chr2L_17820001	RAL-307_100b
778	chr2L	17911942	17911964	chr2L	17914145	17914167	pogo	17	2202	20.5	18.0	19.2	0.8	2225	chr2L	17911942	intergenic	not near genes	chr2L	17913054	intergenic	not near genes	chr2L	17914167	intergenic	CG43271 -	chr2L_17_17910001	chr2L_17910001	RAL-307_100b
779	chr2L	17911965	17911990	chr2L	17914138	17914193	pogo	20	2197	12.5	15.5	14.0	1.3	2228	chr2L	17911965	intergenic	not near genes	chr2L	17913079	intergenic	not near genes	chr2L	17914193	intergenic	CG43271 -	chr2L_20_17910001	chr2L_17910001	RAL-307_100b
782	chr2L	17951918	17951978	chr2L	17953410	17953470	hobo	53	1491	11.5	16.0	13.8	3.6	1552	chr2L	17951918	intergenic	CR44398 -,CR44397 -	chr2L	17952694	intergenic	not near genes	chr2L	17953470	intergenic	not near genes	chr2L_53_17950001	chr2L_17950001	RAL-307_100b
783	chr2L	18051856	18051904	chr2L	18061023	18061069	roo	39	9165	15.0	14.5	14.8	2.5	9213	chr2L	18051856	intron	rdo +	chr2L	18056462	intron	rdo +	chr2L	18061069	intron	rdo +	chr2L_39_18055001	chr2L_18055001	RAL-307_100b
799	chr2L	18408004	18408052	chr2L	18412813	18412861	Doc	47	4807	15.0	16.0	15.5	2.8	4857	chr2L	18408004	intergenic	not near genes	chr2L	18410432	intergenic	not near genes	chr2L	18412861	intergenic	not near genes	chr2L_47_18410001	chr2L_18410001	RAL-307_100b
819	chr2L	19147281	19147398	chr2L	19154403	19154442	297	27	7092	0.5	14.5	7.5	3.2	7161	chr2L	19147281	intron	brat +	chr2L	19150862	intron	brat +	chr2L	19154442	intron	brat +	chr2L_27_19150001	chr2L_19150001	RAL-307_100b
825	chr2L	19345000	19345045	chr2L	19357225	19357262	blood	45	12231	19.5	22.0	20.8	2.1	12262	chr2L	19345000	intron	dnt -	chr2L	19351131	intron	dnt -	chr2L	19357262	intron	dnt -	chr2L_45_19350001	chr2L_19350001	RAL-307_100b
844	chr2L	19620070	19620083	chr2L	19621084	19621097	jockey	16	1013	36.5	15.0	25.8	0.6	1027	chr2L	19620070	intron	Lar +	chr2L	19620584	intron	Lar +	chr2L	19621097	intron	Lar +	chr2L_16_19620001	chr2L_19620001	RAL-307_100b
845	chr2L	19620084	19620129	chr2L	19621081	19621124	jockey	59	1008	15.5	13.0	14.2	3.9	1040	chr2L	19620084	intron	Lar +	chr2L	19620604	intron	Lar +	chr2L	19621124	intron	Lar +	chr2L_59_19620001	chr2L_19620001	RAL-307_100b
848	chr2L	19652543	19652601	chr2L	19674004	19674059	opus	39	21459	9.0	13.0	11.0	3.2	21516	chr2L	19652543	intron	Lar +	chr2L	19663301	intron	Lar +	chr2L	19674059	intron	Lar +	chr2L_39_19660001	chr2L_19660001	RAL-307_100b
849	chr2L	19703515	19703559	chr2L	19712676	19712720	roo	42	9158	22.0	18.0	20.0	2.0	9205	chr2L	19703515	intron	Lar +	chr2L	19708118	intron	Lar +	chr2L	19712720	intron	Lar +	chr2L_42_19705001	chr2L_19705001	RAL-307_100b
850	chr2L	19703560	19703569	chr2L	19712675	19712695	roo	11	9149	17.0	16.5	16.8	0.6	9135	chr2L	19703560	intron	Lar +	chr2L	19708128	intron	Lar +	chr2L	19712695	intron	Lar +	chr2L_11_19705001	chr2L_19705001	RAL-307_100b
852	chr2L	19762784	19762840	chr2L	19763049	19763093	pogo	50	264	12.5	11.5	12.0	3.8	309	chr2L	19762784	exon	fbp -	chr2L	19762938	intron	fbp -	chr2L	19763093	intron	fbp -	chr2L_50_19760001	chr2L_19760001	RAL-307_100b
860	chr2L	20005849	20005899	chr2L	20010950	20010989	flea	50	5099	20.0	18.5	19.2	2.5	5140	chr2L	20005849	intron	CG43861 -	chr2L	20008419	intron	CG43861 -	chr2L	20010989	intron	CG43861 -	chr2L_50_20005001	chr2L_20005001	RAL-307_100b
866	chr2L	20272089	20272132	chr2L	20282825	20282868	copia	40	10735	18.5	14.5	16.5	2.3	10779	chr2L	20272089	intergenic	not near genes	chr2L	20277478	intergenic	not near genes	chr2L	20282868	intergenic	not near genes	chr2L_40_20275001	chr2L_20275001	RAL-307_100b
867	chr2L	20272133	20272142	chr2L	20282821	20282878	copia	9	10730	13.5	12.0	12.8	0.7	10745	chr2L	20272133	intergenic	not near genes	chr2L	20277506	intergenic	not near genes	chr2L	20282878	intergenic	not near genes	chr2L_9_20275001	chr2L_20275001	RAL-307_100b
870	chr2L	20303134	20303183	chr2L	20310627	20310676	blood	38	7492	16.5	13.5	15.0	2.4	7542	chr2L	20303134	intergenic	not near genes	chr2L	20306905	intergenic	not near genes	chr2L	20310676	intergenic	not near genes	chr2L_38_20305001	chr2L_20305001	RAL-307_100b
872	chr2L	20372193	20372255	chr2L	20372468	20372521	pogo	30	274	0.0	20.0	10.0	2.7	328	chr2L	20372193	intergenic	Ugt37a1 -	chr2L	20372357	intergenic	Ugt37a1 -	chr2L	20372521	exon	Ugt37a1 -	chr2L_30_20370001	chr2L_20370001	RAL-307_100b
881	chr2L	20568635	20568686	chr2L	20569050	20569101	X-element	50	413	14.5	12.5	13.5	3.4	466	chr2L	20568635	intron	CR45347 +	chr2L	20568868	intron	CR45347 +	chr2L	20569101	intron	CR45347 +	chr2L_50_20565001	chr2L_20565001	RAL-307_100b
884	chr2L	20576197	20576201	chr2L	20583690	20583691	blood	4	7492	30.5	14.0	22.2	0.2	7494	chr2L	20576197	intergenic	CR45347 +	chr2L	20579944	intergenic	not near genes	chr2L	20583691	3` UTR	CR44909 -	chr2L_4_20575001	chr2L_20575001	RAL-307_100b
885	chr2L	20576202	20576252	chr2L	20583687	20583745	blood	43	7490	14.5	10.5	12.5	3.2	7543	chr2L	20576202	intergenic	CR45347 +	chr2L	20579974	intergenic	not near genes	chr2L	20583745	3` UTR	CR44909 -	chr2L_43_20575001	chr2L_20575001	RAL-307_100b
895	chr2L	20835787	20835838	chr2L	20836528	20836580	Quasimodo	32	740	18.5	17.5	18.0	1.7	793	chr2L	20835787	5` UTR	Oseg5 -	chr2L	20836184	intergenic	Oseg5 -,Spn38F -	chr2L	20836580	intergenic	Spn38F -	chr2L_32_20835001	chr2L_20835001	RAL-307_100b
897	chr2L	20891520	20891538	chr2L	20896636	20896664	jockey	21	5123	16.0	15.0	15.5	1.3	5144	chr2L	20891520	intron,intron	CG43739 -,sky -	chr2L	20894092	intron,intron	CG43739 -,sky -	chr2L	20896664	intron,intron	CG43739 -,sky -	chr2L_21_20890001	chr2L_20890001	RAL-307_100b
898	chr2L	20891540	20891546	chr2L	20896635	20896672	jockey	5	5111	13.5	14.5	14.0	0.3	5132	chr2L	20891540	intron,intron	CG43739 -,sky -	chr2L	20894106	intron,intron	CG43739 -,sky -	chr2L	20896672	intron,intron	CG43739 -,sky -	chr2L_5_20890001	chr2L_20890001	RAL-307_100b
899	chr2L	20901471	20901478	chr2L	20902657	20902662	1360	9	1187	2.0	1.5	1.8	3.2	1191	chr2L	20901471	intron,intron	CG43739 -,sky -	chr2L	20902066	intron,intron	CG43739 -,sky -	chr2L	20902662	intron,intron	CG43739 -,sky -	chr2L_9_20900001	chr2L_20900001	RAL-307_100b
903	chr2L	20976626	20976634	chr2L	20981466	20981474	X-element	8	4839	33.0	17.0	25.0	0.3	4848	chr2L	20976626	intron	CG42238 -	chr2L	20979050	intron	CG42238 -	chr2L	20981474	intron	CG42238 -	chr2L_8_20975001	chr2L_20975001	RAL-307_100b
904	chr2L	20976636	20976672	chr2L	20981456	20981511	X-element	33	4835	17.5	15.0	16.2	1.9	4875	chr2L	20976636	intron	CG42238 -	chr2L	20979074	intron	CG42238 -	chr2L	20981511	intron	CG42238 -	chr2L_33_20975001	chr2L_20975001	RAL-307_100b
906	chr2L	21020258	21020306	chr2L	21023954	21024007	NOF	43	3700	9.5	18.5	14.0	2.9	3749	chr2L	21020258	intron	CG42238 -	chr2L	21022132	intron	CG42238 -	chr2L	21024007	intron	CG42238 -	chr2L_43_21020001	chr2L_21020001	RAL-307_100b
908	chr2L	21041119	21041167	chr2L	21049400	21049424	Tirant	51	8282	9.0	18.0	13.5	3.5	8305	chr2L	21041119	intron	CG42238 -	chr2L	21045272	intron	CG42238 -	chr2L	21049424	intron	CG42238 -	chr2L_51_21045001	chr2L_21045001	RAL-307_100b
916	chr2L	21347533	21347582	chr2L	21355025	21355078	blood	18	7495	10.5	9.5	10.0	1.6	7545	chr2L	21347533	intron	Tsp39D +	chr2L	21351306	intron	Tsp39D +	chr2L	21355078	intron	Tsp39D +	chr2L_18_21350001	chr2L_21350001	RAL-307_100b
917	chr2L	21597023	21597028	chr2L	21604792	21604797	roo	5	7769	32.5	28.0	30.2	0.2	7774	chr2L	21597023	intergenic	not near genes	chr2L	21600910	intergenic	not near genes	chr2L	21604797	intergenic	not near genes	chr2L_5_21600001	chr2L_21600001	RAL-307_100b
918	chr2L	21597032	21597060	chr2L	21604776	21604817	roo	30	7765	18.0	18.5	18.2	1.6	7785	chr2L	21597032	intergenic	not near genes	chr2L	21600924	intergenic	not near genes	chr2L	21604817	intergenic	not near genes	chr2L_30_21600001	chr2L_21600001	RAL-307_100b
919	chr2L	21691802	21691860	chr2L	21698297	21698329	Burdock	19	6491	8.0	0.5	4.2	3.7	6527	chr2L	21691802	intron	CG31619 +	chr2L	21695066	intron	CG31619 +	chr2L	21698329	intron	CG31619 +	chr2L_19_21695001	chr2L_21695001	RAL-307_100b
935	chr2L	21981662	21981705	chr2L	21990852	21990895	roo	41	9187	24.5	31.0	27.8	1.4	9233	chr2L	21981662	exon	CG2528 -	chr2L	21986278	intron	CG2528 -	chr2L	21990895	exon	CG2528 -	chr2L_41_21985001	chr2L_21985001	RAL-307_100b
936	chr2L	21981706	21981713	chr2L	21990844	21990888	roo	5	9172	15.5	25.5	20.5	0.2	9182	chr2L	21981706	exon	CG2528 -	chr2L	21986297	intron	CG2528 -	chr2L	21990888	exon	CG2528 -	chr2L_5_21985001	chr2L_21985001	RAL-307_100b
945	chr2L	22258595	22258606	chr2L	22260744	22260754	G6	9	2149	40.5	22.0	31.2	0.3	2159	chr2L	22258595	intergenic	Tif-IA +	chr2L	22259674	intergenic	not near genes	chr2L	22260754	intergenic	not near genes	chr2L_9_22255001	chr2L_22255001	RAL-307_100b
946	chr2L	22258608	22258647	chr2L	22260743	22260793	G6	46	2144	14.5	22.0	18.2	2.4	2185	chr2L	22258608	intergenic	Tif-IA +	chr2L	22259700	intergenic	not near genes	chr2L	22260793	intergenic	not near genes	chr2L_46_22255001	chr2L_22255001	RAL-307_100b
949	chr2L	22548922	22548934	chr2L	22550172	22550184	1360	16	1250	0.5	41.0	20.8	0.7	1262	chr2L	22548922	intergenic	CG17490 +	chr2L	22549553	intergenic	not near genes	chr2L	22550184	intergenic	CG17493 +	chr2L_16_22545001	chr2L_22545001	RAL-307_100b
950	chr2L	22548937	22548941	chr2L	22550156	22550191	1360	4	1238	0.5	30.5	15.5	0.2	1254	chr2L	22548937	intergenic	CG17490 +	chr2L	22549564	intergenic	not near genes	chr2L	22550191	intergenic	CG17493 +	chr2L_4_22545001	chr2L_22545001	RAL-307_100b
951	chr2L	22581945	22582000	chr2L	22583759	22583814	S-element	45	1811	13.5	18.0	15.8	2.7	1869	chr2L	22581945	intron	CG17494 +	chr2L	22582880	intron	CG17494 +	chr2L	22583814	intron	CG17494 +	chr2L_45_22580001	chr2L_22580001	RAL-307_100b
953	chr2L	22776395	22776452	chr2L	22778209	22778266	S-element	52	1812	11.5	21.0	16.2	3.0	1871	chr2L	22776395	intergenic	not near genes	chr2L	22777330	intergenic	not near genes	chr2L	22778266	intergenic	not near genes	chr2L_52_22775001	chr2L_22775001	RAL-307_100b
956	chr2R	469949	469980	chr2R	473199	473246	F-element	28	3262	7.5	12.5	10.0	2.5	3297	chr2R	469949	intergenic	not near genes	chr2R	471598	intergenic	not near genes	chr2R	473246	intergenic	not near genes	chr2R_28_470001	chr2R_470001	RAL-307_100b
957	chr2R	529323	529355	chr2R	537948	537975	Max-element	13	8644	8.0	13.5	10.8	1.1	8652	chr2R	529323	intron	CG40378 +	chr2R	533649	intron	CG40378 +	chr2R	537975	intron	CG40378 +	chr2R_13_530001	chr2R_530001	RAL-307_100b
958	chr2R	552735	552754	chr2R	553977	553996	1360	8	1240	22.5	17.5	20.0	0.4	1261	chr2R	552735	intron	CG40378 +	chr2R	553366	intron	CG40378 +	chr2R	553996	intron	CG40378 +	chr2R_8_550001	chr2R_550001	RAL-307_100b
959	chr2R	552756	552789	chr2R	553973	553983	1360	22	1215	9.0	15.5	12.2	1.7	1227	chr2R	552756	intron	CG40378 +	chr2R	553370	intron	CG40378 +	chr2R	553983	intron	CG40378 +	chr2R_22_550001	chr2R_550001	RAL-307_100b
962	chr2R	1082373	1082384	chr2R	1087133	1087161	Doc	8	4764	20.5	4.5	12.5	0.6	4788	chr2R	1082373	intron	rl +	chr2R	1084767	intron	rl +	chr2R	1087161	intron	rl +	chr2R_8_1080001	chr2R_1080001	RAL-307_100b
966	chr2R	1516580	1516603	chr2R	1521333	1521356	1731	25	4752	39.0	22.5	30.8	0.8	4776	chr2R	1516580	exon	Maf1 -	chr2R	1518968	intron	Maf1 -	chr2R	1521356	5` UTR	Maf1 -	chr2R_25_1515001	chr2R_1515001	RAL-307_100b
970	chr2R	2110482	2110498	chr2R	2118065	2118081	17.6	12	7582	33.5	15.0	24.2	0.5	7599	chr2R	2110482	intron	CG17684 -	chr2R	2114282	intron	CG17684 -	chr2R	2118081	intron	CG17684 -	chr2R_12_2110001	chr2R_2110001	RAL-307_100b
971	chr2R	2498959	2499014	chr2R	2508130	2508173	roo	52	9168	16.5	10.5	13.5	3.6	9214	chr2R	2498959	intron	MFS17 -	chr2R	2503566	intron	MFS17 -	chr2R	2508173	intron	MFS17 -	chr2R_52_2500001	chr2R_2500001	RAL-307_100b
973	chr2R	1373049	1373060	chr2R	2589322	2589345	Cr1a	11	1216274	68.5	56.0	62.2	0.2	1216296	chr2R	1373049	intron	l(2)41Ab +	chr2R	1981197	intron	CG17684 -	chr2R	2589345	intergenic	not near genes	chr2R_11_1980001	chr2R_1980001	RAL-307_100b
974	chr2R	2875360	2875394	chr2R	2878899	2878934	HMS-Beagle	10	3536	67.5	13.0	40.2	0.2	3574	chr2R	2875360	intergenic	not near genes	chr2R	2877147	intergenic	not near genes	chr2R	2878934	intergenic	not near genes	chr2R_10_2875001	chr2R_2875001	RAL-307_100b
978	chr2R	3144064	3144110	chr2R	3393367	3393413	Doc	24	249301	56.5	19.0	37.8	0.6	249349	chr2R	3144064	intron	CG42596 +	chr2R	3268738	intergenic	not near genes	chr2R	3393413	intergenic	not near genes	chr2R_24_3265001	chr2R_3265001	RAL-307_100b
982	chr2R	3532596	3532638	chr2R	3536064	3536099	Doc	16	3466	7.5	14.5	11.0	1.3	3503	chr2R	3532596	intergenic	not near genes	chr2R	3534348	intergenic	not near genes	chr2R	3536099	intergenic	not near genes	chr2R_16_3530001	chr2R_3530001	RAL-307_100b
983	chr2R	3927683	3927687	chr2R	4854360	4854369	gypsy10	5	926681	57.0	26.5	41.8	0.1	926686	chr2R	3927683	intron	uex -	chr2R	4391026	intron	Gprk1 -	chr2R	4854369	intergenic	not near genes	chr2R_5_4390001	chr2R_4390001	RAL-307_100b
987	chr2R	4622931	4622950	chr2R	4624115	4624118	1360	5	1181	36.5	22.0	29.2	0.2	1187	chr2R	4622931	intergenic	CR44101 -	chr2R	4623524	intergenic	not near genes	chr2R	4624118	intergenic	not near genes	chr2R_5_4620001	chr2R_4620001	RAL-307_100b
988	chr2R	4622962	4622984	chr2R	4624110	4624168	1360	32	1170	18.5	19.0	18.8	1.6	1206	chr2R	4622962	intergenic	CR44101 -	chr2R	4623565	intergenic	not near genes	chr2R	4624168	intergenic	not near genes	chr2R_32_4620001	chr2R_4620001	RAL-307_100b
989	chr2R	4624619	4624674	chr2R	4626549	4626588	Bica	48	1928	18.5	19.5	19.0	2.4	1969	chr2R	4624619	intergenic	not near genes	chr2R	4625604	intergenic	not near genes	chr2R	4626588	intergenic	not near genes	chr2R_48_4625001	chr2R_4625001	RAL-307_100b
997	chr2R	4838847	4838902	chr2R	4840395	4840450	transib2	45	1544	14.5	15.5	15.0	2.8	1603	chr2R	4838847	intergenic	not near genes	chr2R	4839648	intergenic	not near genes	chr2R	4840450	intergenic	not near genes	chr2R_45_4835001	chr2R_4835001	RAL-307_100b
998	chr2R	4870718	4870742	chr2R	4871254	4871278	R1A1-element	23	534	24.5	16.5	20.5	1.1	560	chr2R	4870718	intergenic	not near genes	chr2R	4870998	intergenic	not near genes	chr2R	4871278	intergenic	not near genes	chr2R_23_4870001	chr2R_4870001	RAL-307_100b
1010	chr2R	5417979	5418024	chr2R	5420626	5420669	Burdock	53	2654	21.0	14.0	17.5	2.9	2690	chr2R	5417979	intron	laccase2 +	chr2R	5419324	intron	laccase2 +	chr2R	5420669	intron	laccase2 +	chr2R_53_5415001	chr2R_5415001	RAL-307_100b
1016	chr2R	5543200	5543222	chr2R	5547279	5547331	invader1	26	4102	1.0	17.0	9.0	2.6	4131	chr2R	5543200	intron	CG30438 +	chr2R	5545266	intron	CG30438 +	chr2R	5547331	intron	CG30438 +	chr2R_26_5545001	chr2R_5545001	RAL-307_100b
1029	chr2R	5869252	5869254	chr2R	5874353	5874355	flea	5	5101	45.0	17.0	31.0	0.2	5103	chr2R	5869252	intergenic	not near genes	chr2R	5871804	intergenic	not near genes	chr2R	5874355	intergenic	not near genes	chr2R_5_5870001	chr2R_5870001	RAL-307_100b
1030	chr2R	5869255	5869269	chr2R	5874351	5874370	flea	14	5100	35.0	15.5	25.2	0.5	5115	chr2R	5869255	intergenic	not near genes	chr2R	5871812	intergenic	not near genes	chr2R	5874370	intergenic	not near genes	chr2R_14_5870001	chr2R_5870001	RAL-307_100b
1031	chr2R	5869270	5869309	chr2R	5874350	5874378	flea	47	5097	15.5	14.5	15.0	2.9	5108	chr2R	5869270	intergenic	not near genes	chr2R	5871824	intergenic	not near genes	chr2R	5874378	intergenic	not near genes	chr2R_47_5870001	chr2R_5870001	RAL-307_100b
1035	chr2R	5902144	5902191	chr2R	5909718	5909775	17.6	29	7581	7.0	7.5	7.2	3.5	7631	chr2R	5902144	intron	CG43366 +	chr2R	5905960	intron	CG43366 +	chr2R	5909775	intron	CG43366 +	chr2R_29_5905001	chr2R_5905001	RAL-307_100b
1038	chr2R	5939651	5939653	chr2R	5940873	5940875	INE-1	4	1222	20.5	34.0	27.2	0.1	1224	chr2R	5939651	intergenic	not near genes	chr2R	5940263	intergenic	not near genes	chr2R	5940875	intergenic	not near genes	chr2R_4_5940001	chr2R_5940001	RAL-307_100b
1039	chr2R	5939654	5939670	chr2R	5940870	5940892	INE-1	23	1219	11.0	33.0	22.0	1.0	1238	chr2R	5939654	intergenic	not near genes	chr2R	5940273	intergenic	not near genes	chr2R	5940892	intergenic	not near genes	chr2R_23_5940001	chr2R_5940001	RAL-307_100b
1047	chr2R	6096697	6096700	chr2R	6101920	6101923	BS	5	5223	51.5	22.0	36.8	0.1	5226	chr2R	6096697	intron	EcR -	chr2R	6099310	intron	EcR -	chr2R	6101923	intron	EcR -	chr2R_5_6095001	chr2R_6095001	RAL-307_100b
1048	chr2R	6096707	6096720	chr2R	6101911	6101943	BS	17	5214	36.0	16.5	26.2	0.6	5236	chr2R	6096707	intron	EcR -	chr2R	6099325	intron	EcR -	chr2R	6101943	intron	EcR -	chr2R_17_6095001	chr2R_6095001	RAL-307_100b
1049	chr2R	6096721	6096751	chr2R	6101910	6101943	BS	26	5212	15.0	16.5	15.8	1.5	5222	chr2R	6096721	intron	EcR -	chr2R	6099332	intron	EcR -	chr2R	6101943	intron	EcR -	chr2R_26_6095001	chr2R_6095001	RAL-307_100b
1055	chr2R	6494510	6494537	chr2R	6499297	6499324	F-element	15	4786	20.0	8.5	14.2	1.0	4814	chr2R	6494510	intergenic	not near genes	chr2R	6496917	intergenic	not near genes	chr2R	6499324	intergenic	not near genes	chr2R_15_6495001	chr2R_6495001	RAL-307_100b
1056	chr2R	6494538	6494553	chr2R	6499288	6499340	F-element	8	4779	11.5	7.5	9.5	0.8	4802	chr2R	6494538	intergenic	not near genes	chr2R	6496939	intergenic	not near genes	chr2R	6499340	intergenic	not near genes	chr2R_8_6495001	chr2R_6495001	RAL-307_100b
1059	chr2R	6579774	6579804	chr2R	6584886	6584916	flea	23	5111	16.0	9.5	12.8	1.7	5142	chr2R	6579774	intron	jing +	chr2R	6582345	intron	jing +	chr2R	6584916	intron	jing +	chr2R_23_6580001	chr2R_6580001	RAL-307_100b
1063	chr2R	6952151	6952185	chr2R	6959751	6959790	opus	33	7605	20.5	14.0	17.2	1.8	7639	chr2R	6952151	intron,intron,exon	mim -,CheB42c -,ppk25 +	chr2R	6955970	intron,intron	mim -,CheB42c -	chr2R	6959790	intron,intron	mim -,CheB42c -	chr2R_33_6955001	chr2R_6955001	RAL-307_100b
1066	chr2R	7139947	7139954	chr2R	7141448	7141471	hopper2	6	1514	3.0	37.5	20.2	0.3	1524	chr2R	7139947	intergenic	not near genes	chr2R	7140709	intergenic	not near genes	chr2R	7141471	intergenic	not near genes	chr2R_6_7140001	chr2R_7140001	RAL-307_100b
1069	chr2R	7196552	7196597	chr2R	7201352	7201371	F-element	29	4798	15.0	0.0	7.5	3.4	4819	chr2R	7196552	intron	pk +	chr2R	7198962	intron	pk +	chr2R	7201371	intron	pk +	chr2R_29_7195001	chr2R_7195001	RAL-307_100b
1070	chr2R	7209844	7209873	chr2R	7217588	7217626	roo	34	7766	15.0	20.0	17.5	1.8	7782	chr2R	7209844	intron	pk +	chr2R	7213735	intron	pk +	chr2R	7217626	intron	pk +	chr2R_34_7210001	chr2R_7210001	RAL-307_100b
1071	chr2R	7235797	7235818	chr2R	7240914	7240935	jockey	17	5117	27.0	10.5	18.8	0.9	5138	chr2R	7235797	intergenic	not near genes	chr2R	7238366	intergenic	not near genes	chr2R	7240935	intergenic	not near genes	chr2R_17_7235001	chr2R_7235001	RAL-307_100b
1072	chr2R	7235821	7235831	chr2R	7240913	7240948	jockey	11	5109	20.5	10.5	15.5	0.7	5127	chr2R	7235821	intergenic	not near genes	chr2R	7238384	intergenic	not near genes	chr2R	7240948	intergenic	not near genes	chr2R_11_7235001	chr2R_7235001	RAL-307_100b
1073	chr2R	7235832	7235849	chr2R	7240909	7240960	jockey	19	5105	14.5	11.0	12.8	1.4	5128	chr2R	7235832	intergenic	not near genes	chr2R	7238396	intergenic	not near genes	chr2R	7240960	intergenic	not near genes	chr2R_19_7235001	chr2R_7235001	RAL-307_100b
1076	chr2R	7262173	7262212	chr2R	7269259	7269288	297	13	7082	10.0	25.0	17.5	0.7	7115	chr2R	7262173	intergenic	not near genes	chr2R	7265730	intergenic	not near genes	chr2R	7269288	intergenic	not near genes	chr2R_13_7265001	chr2R_7265001	RAL-307_100b
1079	chr2R	7434878	7434882	chr2R	7439203	7439208	Juan	4	4326	21.0	22.5	21.8	0.2	4330	chr2R	7434878	intergenic	so +	chr2R	7437043	intergenic	not near genes	chr2R	7439208	intergenic	not near genes	chr2R_4_7435001	chr2R_7435001	RAL-307_100b
1080	chr2R	7434885	7434912	chr2R	7439202	7439238	Juan	20	4326	20.5	22.5	21.5	0.9	4353	chr2R	7434885	intergenic	so +	chr2R	7437062	intergenic	not near genes	chr2R	7439238	intergenic	not near genes	chr2R_20_7435001	chr2R_7435001	RAL-307_100b
1081	chr2R	7608386	7608402	chr2R	7613614	7613630	I-element	14	5227	25.5	22.5	24.0	0.6	5244	chr2R	7608386	intron	CG1358 -	chr2R	7611008	intron	CG1358 -	chr2R	7613630	intron	CG1358 -	chr2R_14_7610001	chr2R_7610001	RAL-307_100b
1082	chr2R	7608405	7608435	chr2R	7613609	7613638	I-element	30	5220	13.0	19.0	16.0	1.8	5233	chr2R	7608405	intron	CG1358 -	chr2R	7611022	intron	CG1358 -	chr2R	7613638	intron	CG1358 -	chr2R_30_7610001	chr2R_7610001	RAL-307_100b
1088	chr2R	7815650	7815705	chr2R	7822139	7822182	Burdock	43	6490	12.5	9.0	10.8	3.6	6532	chr2R	7815650	intergenic	CG1882 +	chr2R	7818916	intergenic	not near genes	chr2R	7822182	3` UTR	cathD -	chr2R_43_7815001	chr2R_7815001	RAL-307_100b
1089	chr2R	7862208	7862250	chr2R	7867347	7867386	flea	20	5134	12.0	11.0	11.5	1.6	5178	chr2R	7862208	intron	Dgk -	chr2R	7864797	intron	Dgk -	chr2R	7867386	intron	Dgk -	chr2R_20_7860001	chr2R_7860001	RAL-307_100b
1090	chr2R	7869168	7869173	chr2R	7873979	7873984	Doc	6	4811	46.0	21.5	33.8	0.2	4816	chr2R	7869168	intron	Dgk -	chr2R	7871576	intron	Dgk -	chr2R	7873984	intron	Dgk -	chr2R_6_7870001	chr2R_7870001	RAL-307_100b
1091	chr2R	7869174	7869178	chr2R	7873978	7873989	Doc	8	4808	45.0	21.0	33.0	0.2	4815	chr2R	7869174	intron	Dgk -	chr2R	7871582	intron	Dgk -	chr2R	7873989	intron	Dgk -	chr2R_8_7870001	chr2R_7870001	RAL-307_100b
1092	chr2R	7869179	7869217	chr2R	7873975	7874022	Doc	36	4807	24.5	18.0	21.2	1.6	4843	chr2R	7869179	intron	Dgk -	chr2R	7871600	intron	Dgk -	chr2R	7874022	intron	Dgk -	chr2R_36_7870001	chr2R_7870001	RAL-307_100b
1108	chr2R	8160909	8160946	chr2R	8161024	8161061	1360	35	113	21.0	33.5	27.2	1.2	152	chr2R	8160909	exon	CG8708 -	chr2R	8160985	intron	CG8708 -	chr2R	8161061	intron	CG8708 -	chr2R_35_8160001	chr2R_8160001	RAL-307_100b
1116	chr2R	8330837	8330895	chr2R	8331347	8331358	roo	54	505	7.5	13.5	10.5	4.7	521	chr2R	8330837	intron	pdm3 +	chr2R	8331098	intron	pdm3 +	chr2R	8331358	intron	pdm3 +	chr2R_54_8330001	chr2R_8330001	RAL-307_100b
1117	chr2R	8398189	8398223	chr2R	8402995	8403029	Doc	31	4803	21.5	18.0	19.8	1.5	4840	chr2R	8398189	intron	CG2121 -	chr2R	8400609	intron	CG2121 -	chr2R	8403029	intron	CG2121 -	chr2R_31_8400001	chr2R_8400001	RAL-307_100b
1118	chr2R	8398224	8398240	chr2R	8402994	8403046	Doc	14	4796	15.0	18.0	16.5	0.8	4822	chr2R	8398224	intron	CG2121 -	chr2R	8400635	intron	CG2121 -	chr2R	8403046	intron	CG2121 -	chr2R_14_8400001	chr2R_8400001	RAL-307_100b
1119	chr2R	8416293	8416314	chr2R	8417142	8417148	I-element	15	847	20.0	13.0	16.5	0.9	855	chr2R	8416293	intergenic	not near genes	chr2R	8416720	intergenic	CG43296 -	chr2R	8417148	intergenic	CG43296 -	chr2R_15_8415001	chr2R_8415001	RAL-307_100b
1129	chr2R	8722738	8722794	chr2R	8723004	8723038	pogo	57	258	13.5	13.0	13.2	4.0	300	chr2R	8722738	intron	CG14767 -	chr2R	8722888	intron	CG14767 -	chr2R	8723038	intron	CG14767 -	chr2R_57_8720001	chr2R_8720001	RAL-307_100b
1130	chr2R	8777902	8777946	chr2R	8784131	8784175	diver	24	6228	10.5	12.5	11.5	1.9	6273	chr2R	8777902	intergenic	not near genes	chr2R	8781038	intergenic	not near genes	chr2R	8784175	intergenic	not near genes	chr2R_24_8780001	chr2R_8780001	RAL-307_100b
1143	chr2R	9151282	9151334	chr2R	9157771	9157798	Burdock	43	6492	15.0	15.0	15.0	2.7	6516	chr2R	9151282	exon	CG30345 +	chr2R	9154540	intergenic	not near genes	chr2R	9157798	intergenic	CG8008 -	chr2R_43_9150001	chr2R_9150001	RAL-307_100b
1144	chr2R	9212672	9212690	chr2R	9213183	9213201	roo	22	509	36.0	23.5	29.8	0.7	529	chr2R	9212672	intergenic	CR45309 +	chr2R	9212936	intergenic	CR45309 +	chr2R	9213201	5` UTR	CR45309 +	chr2R_22_9210001	chr2R_9210001	RAL-307_100b
1145	chr2R	9212691	9212720	chr2R	9213182	9213231	roo	35	504	20.5	22.5	21.5	1.6	540	chr2R	9212691	intergenic	CR45309 +	chr2R	9212961	intergenic	CR45309 +	chr2R	9213231	5` UTR	CR45309 +	chr2R_35_9210001	chr2R_9210001	RAL-307_100b
1150	chr2R	9352252	9352255	chr2R	9361421	9361430	roo	5	9173	23.0	40.5	31.8	0.2	9178	chr2R	9352252	intron	CG13954 -	chr2R	9356841	intron	CG13954 -	chr2R	9361430	intron	CG13954 -	chr2R_5_9355001	chr2R_9355001	RAL-307_100b
1151	chr2R	9352257	9352258	chr2R	9361390	9361433	roo	5	9158	21.0	22.0	21.5	0.2	9176	chr2R	9352257	intron	CG13954 -	chr2R	9356845	intron	CG13954 -	chr2R	9361433	intron	CG13954 -	chr2R_5_9355001	chr2R_9355001	RAL-307_100b
1155	chr2R	9480050	9480099	chr2R	9490606	9490655	roo	29	10555	16.5	12.5	14.5	1.9	10605	chr2R	9480050	intergenic	not near genes	chr2R	9485352	intergenic	not near genes	chr2R	9490655	intergenic	not near genes	chr2R_29_9485001	chr2R_9485001	RAL-307_100b
1162	chr2R	9726590	9726642	chr2R	9734168	9734220	17.6	27	7577	12.0	11.0	11.5	2.2	7630	chr2R	9726590	intron	sqa -	chr2R	9730405	intron	sqa -	chr2R	9734220	intron	sqa -	chr2R_27_9730001	chr2R_9730001	RAL-307_100b
1166	chr2R	9871044	9871046	chr2R	9871553	9871557	roo	4	510	6.0	27.0	16.5	0.2	513	chr2R	9871044	intron	cbx -	chr2R	9871300	intron	cbx -	chr2R	9871557	intron,5` UTR	cbx -,CG18446 +	chr2R_4_9870001	chr2R_9870001	RAL-307_100b
1167	chr2R	9871047	9871073	chr2R	9871534	9871570	roo	30	506	0.5	16.0	8.2	3.3	523	chr2R	9871047	intron	cbx -	chr2R	9871308	intron	cbx -	chr2R	9871570	intron,5` UTR	cbx -,CG18446 +	chr2R_30_9870001	chr2R_9870001	RAL-307_100b
1170	chr2R	9945418	9945424	chr2R	9945634	9945645	BS	4	220	30.0	11.0	20.5	0.2	227	chr2R	9945418	intron	Mef2 -	chr2R	9945532	intron	Mef2 -	chr2R	9945645	intron	Mef2 -	chr2R_4_9945001	chr2R_9945001	RAL-307_100b
1171	chr2R	9945426	9945435	chr2R	9945632	9945645	BS	11	215	25.0	11.0	18.0	0.6	219	chr2R	9945426	intron	Mef2 -	chr2R	9945536	intron	Mef2 -	chr2R	9945645	intron	Mef2 -	chr2R_11_9945001	chr2R_9945001	RAL-307_100b
1172	chr2R	9945437	9945467	chr2R	9945628	9945688	BS	26	213	10.5	9.5	10.0	2.4	251	chr2R	9945437	intron	Mef2 -	chr2R	9945562	intron	Mef2 -	chr2R	9945688	intron	Mef2 -	chr2R_26_9945001	chr2R_9945001	RAL-307_100b
1173	chr2R	10005832	10005872	chr2R	10007015	10007021	1360	37	1182	23.0	19.5	21.2	1.7	1189	chr2R	10005832	intron	Pka-R2 -	chr2R	10006426	intron	Pka-R2 -	chr2R	10007021	intron	Pka-R2 -	chr2R_37_10005001	chr2R_10005001	RAL-307_100b
1174	chr2R	10005873	10005881	chr2R	10007013	10007054	1360	10	1168	18.5	16.5	17.5	0.5	1181	chr2R	10005873	intron	Pka-R2 -	chr2R	10006464	intron	Pka-R2 -	chr2R	10007054	intron	Pka-R2 -	chr2R_10_10005001	chr2R_10005001	RAL-307_100b
1181	chr2R	10176858	10176913	chr2R	10186050	10186105	roo	34	9190	16.0	7.0	11.5	2.7	9247	chr2R	10176858	intron	KCNQ -	chr2R	10181482	intron	KCNQ -	chr2R	10186105	intron	KCNQ -	chr2R_34_10180001	chr2R_10180001	RAL-307_100b
1210	chr2R	10585574	10585587	chr2R	10594166	10594193	Tirant	16	8604	15.0	18.0	16.5	0.9	8619	chr2R	10585574	intron	psq +	chr2R	10589884	intron	psq +	chr2R	10594193	intron	psq +	chr2R_16_10585001	chr2R_10585001	RAL-307_100b
1212	chr2R	10622326	10622384	chr2R	10637115	10637119	mdg1	31	14783	8.0	14.5	11.2	2.5	14793	chr2R	10622326	intron	CG11883 +	chr2R	10629722	intron	CG11883 +	chr2R	10637119	intron	CG11883 +	chr2R_31_10625001	chr2R_10625001	RAL-307_100b
1214	chr2R	10659028	10659052	chr2R	10666668	10666692	mdg1	22	7638	0.0	8.0	4.0	4.4	7664	chr2R	10659028	intergenic	not near genes	chr2R	10662860	intergenic	not near genes	chr2R	10666692	intergenic	not near genes	chr2R_22_10660001	chr2R_10660001	RAL-307_100b
1232	chr2R	10948013	10948020	chr2R	10955581	10955596	17.6	8	7572	6.0	17.0	11.5	0.6	7583	chr2R	10948013	intergenic	not near genes	chr2R	10951804	intergenic	not near genes	chr2R	10955596	intergenic	not near genes	chr2R_8_10950001	chr2R_10950001	RAL-307_100b
1233	chr2R	10948021	10948062	chr2R	10955575	10955628	17.6	37	7571	5.0	14.0	9.5	3.5	7607	chr2R	10948021	intergenic	not near genes	chr2R	10951824	intergenic	not near genes	chr2R	10955628	intergenic	not near genes	chr2R_37_10950001	chr2R_10950001	RAL-307_100b
1237	chr2R	10979667	10979681	chr2R	10980129	10980163	297	14	492	8.0	17.0	12.5	1.0	496	chr2R	10979667	intergenic	not near genes	chr2R	10979915	intergenic	not near genes	chr2R	10980163	intergenic	not near genes	chr2R_14_10975001	chr2R_10975001	RAL-307_100b
1239	chr2R	11009794	11009848	chr2R	11018993	11019047	roo	55	9194	20.5	22.0	21.2	2.5	9253	chr2R	11009794	intron	luna -	chr2R	11014420	intron	luna -	chr2R	11019047	intron	luna -	chr2R_55_11010001	chr2R_11010001	RAL-307_100b
1240	chr2R	11019857	11019861	chr2R	11024948	11024952	jockey	4	5090	29.0	14.5	21.8	0.2	5095	chr2R	11019857	intron	luna -	chr2R	11022404	intron	luna -	chr2R	11024952	intron	luna -	chr2R_4_11020001	chr2R_11020001	RAL-307_100b
1241	chr2R	11019864	11019908	chr2R	11024942	11024988	jockey	26	5083	10.0	14.0	12.0	2.0	5124	chr2R	11019864	intron	luna -	chr2R	11022426	intron	luna -	chr2R	11024988	intron	luna -	chr2R_26_11020001	chr2R_11020001	RAL-307_100b
1246	chr2R	11134086	11134143	chr2R	11134352	11134409	pogo	35	265	11.0	12.0	11.5	2.8	323	chr2R	11134086	intergenic	not near genes	chr2R	11134248	intergenic	not near genes	chr2R	11134409	intergenic	not near genes	chr2R_35_11130001	chr2R_11130001	RAL-307_100b
1249	chr2R	11207803	11207827	chr2R	11208015	11208036	BS	27	215	32.0	26.0	29.0	0.9	233	chr2R	11207803	intron	shn +	chr2R	11207920	intron	shn +	chr2R	11208036	intron	shn +	chr2R_27_11205001	chr2R_11205001	RAL-307_100b
1250	chr2R	11207829	11207846	chr2R	11208012	11208064	BS	16	211	21.5	23.5	22.5	0.7	235	chr2R	11207829	intron	shn +	chr2R	11207946	intron	shn +	chr2R	11208064	intron	shn +	chr2R_16_11205001	chr2R_11205001	RAL-307_100b
1251	chr2R	11297616	11297651	chr2R	11301962	11301997	flea	32	4345	10.0	8.0	9.0	3.2	4381	chr2R	11297616	intergenic	CG42336 -	chr2R	11299806	intergenic	not near genes	chr2R	11301997	5` UTR	CG7741 +	chr2R_32_11295001	chr2R_11295001	RAL-307_100b
1258	chr2R	11415498	11415510	chr2R	11418671	11418678	opus	5	3173	13.5	22.5	18.0	0.3	3180	chr2R	11415498	intron	Drip -	chr2R	11417088	intron	Drip -	chr2R	11418678	intron	Drip -	chr2R_5_11415001	chr2R_11415001	RAL-307_100b
1259	chr2R	11415511	11415550	chr2R	11418665	11418720	opus	42	3167	7.0	19.5	13.2	3.0	3209	chr2R	11415511	intron	Drip -	chr2R	11417116	intron	Drip -	chr2R	11418720	intron	Drip -	chr2R_42_11415001	chr2R_11415001	RAL-307_100b
1263	chr2R	11472627	11472628	chr2R	11473849	11473850	pogo	4	1222	47.5	18.0	32.8	0.1	1223	chr2R	11472627	intergenic	not near genes	chr2R	11473238	intergenic	not near genes	chr2R	11473850	intergenic	not near genes	chr2R_4_11470001	chr2R_11470001	RAL-307_100b
1264	chr2R	11472629	11472637	chr2R	11473846	11473859	pogo	15	1221	42.5	16.5	29.5	0.5	1230	chr2R	11472629	intergenic	not near genes	chr2R	11473244	intergenic	not near genes	chr2R	11473859	intergenic	not near genes	chr2R_15_11470001	chr2R_11470001	RAL-307_100b
1265	chr2R	11472638	11472680	chr2R	11473845	11473901	pogo	43	1219	16.0	16.5	16.2	2.5	1263	chr2R	11472638	intergenic	not near genes	chr2R	11473270	intergenic	not near genes	chr2R	11473901	intergenic	not near genes	chr2R_43_11470001	chr2R_11470001	RAL-307_100b
1308	chr2R	12481140	12481170	chr2R	12482939	12482982	roo	26	1817	11.5	15.5	13.5	1.8	1842	chr2R	12481140	exon	Dh44-R2 +	chr2R	12482061	intron	Dh44-R2 +	chr2R	12482982	intron	Dh44-R2 +	chr2R_26_12480001	chr2R_12480001	RAL-307_100b
1309	chr2R	12501681	12501724	chr2R	12503850	12503906	Rt1c	24	2177	13.5	22.5	18.0	1.3	2225	chr2R	12501681	intron	fdl -	chr2R	12502794	intron	fdl -	chr2R	12503906	intron	fdl -	chr2R_24_12500001	chr2R_12500001	RAL-307_100b
1317	chr2R	12707492	12707549	chr2R	12715883	12715940	roo	45	8390	11.0	11.5	11.2	3.7	8448	chr2R	12707492	intron	CG42663 +	chr2R	12711716	intron	CG42663 +	chr2R	12715940	intron	CG42663 +	chr2R_45_12710001	chr2R_12710001	RAL-307_100b
1318	chr2R	12789268	12789328	chr2R	12797656	12797716	roo	37	8384	12.0	13.0	12.5	2.7	8448	chr2R	12789268	intron,3` UTR	sca +,CR45137 -	chr2R	12793492	intron,intron	sca +,CR45137 -	chr2R	12797716	intron,3` UTR	sca +,CR45137 -	chr2R_37_12790001	chr2R_12790001	RAL-307_100b
1319	chr2R	12819427	12819479	chr2R	12824520	12824573	jockey	32	5091	11.0	14.5	12.8	2.3	5146	chr2R	12819427	intergenic	not near genes	chr2R	12822000	intergenic	not near genes	chr2R	12824573	intergenic	not near genes	chr2R_32_12820001	chr2R_12820001	RAL-307_100b
1330	chr2R	13136815	13136869	chr2R	13141638	13141670	Doc	53	4818	24.5	18.0	21.2	2.4	4855	chr2R	13136815	exon	Cap-G +	chr2R	13139242	intron	Cap-G +	chr2R	13141670	intron	Cap-G +	chr2R_53_13135001	chr2R_13135001	RAL-307_100b
1358	chr2R	13580481	13580525	chr2R	13580848	13580900	jockey	46	371	1.5	9.0	5.2	7.4	419	chr2R	13580481	3` UTR	CG6191 -	chr2R	13580690	3` UTR,3` UTR	CG6191 -,CG45088 -	chr2R	13580900	3` UTR,3` UTR	CG6191 -,CG45088 -	chr2R_46_13580001	chr2R_13580001	RAL-307_100b
1366	chr2R	13728110	13728160	chr2R	13735792	13735842	opus	46	7681	15.0	13.5	14.2	3.0	7732	chr2R	13728110	intron	fas +	chr2R	13731976	intron	fas +	chr2R	13735842	intron	fas +	chr2R_46_13730001	chr2R_13730001	RAL-307_100b
1370	chr2R	13905575	13905637	chr2R	13907582	13907604	Rt1a	33	2000	1.0	16.5	8.8	3.4	2029	chr2R	13905575	intron	shot -	chr2R	13906590	intron	shot -	chr2R	13907604	intron	shot -	chr2R_33_13905001	chr2R_13905001	RAL-307_100b
1387	chr2R	14394210	14394233	chr2R	14399024	14399037	Doc	13	4813	26.0	14.0	20.0	0.6	4827	chr2R	14394210	intergenic	not near genes	chr2R	14396624	intergenic	not near genes	chr2R	14399037	intergenic	not near genes	chr2R_13_14395001	chr2R_14395001	RAL-307_100b
1388	chr2R	14467281	14467284	chr2R	14476464	14476467	roo	4	9183	16.5	26.0	21.2	0.2	9186	chr2R	14467281	intergenic	not near genes	chr2R	14471874	intergenic	not near genes	chr2R	14476467	5` UTR	CR44462 +	chr2R_4_14470001	chr2R_14470001	RAL-307_100b
1389	chr2R	14467285	14467327	chr2R	14476463	14476510	roo	43	9180	5.5	25.0	15.2	2.7	9225	chr2R	14467285	intergenic	not near genes	chr2R	14471898	intergenic	not near genes	chr2R	14476510	5` UTR	CR44462 +	chr2R_43_14470001	chr2R_14470001	RAL-307_100b
1390	chr2R	14497362	14497421	chr2R	14498550	14498592	1360	37	1187	0.0	10.5	5.2	6.0	1230	chr2R	14497362	3` UTR	Cpsf160 -	chr2R	14497977	intron	Cpsf160 -	chr2R	14498592	3` UTR	Cpsf160 -	chr2R_37_14495001	chr2R_14495001	RAL-307_100b
1411	chr2R	14889188	14889192	chr2R	14897821	14897825	Max-element	8	8632	43.5	2.0	22.8	0.3	8637	chr2R	14889188	intergenic	Cyp6a8 -	chr2R	14893506	intergenic	not near genes	chr2R	14897825	intergenic	not near genes	chr2R_8_14890001	chr2R_14890001	RAL-307_100b
1412	chr2R	14889193	14889232	chr2R	14897816	14897842	Max-element	27	8626	19.0	2.0	10.5	2.3	8649	chr2R	14889193	intergenic	Cyp6a8 -	chr2R	14893518	intergenic	not near genes	chr2R	14897842	intergenic	not near genes	chr2R_27_14890001	chr2R_14890001	RAL-307_100b
1420	chr2R	15004692	15004753	chr2R	15005052	15005107	jockey	37	353	16.5	10.0	13.2	2.6	415	chr2R	15004692	intergenic	not near genes	chr2R	15004900	intergenic	not near genes	chr2R	15005107	intergenic	not near genes	chr2R_37_15000001	chr2R_15000001	RAL-307_100b
1421	chr2R	15015435	15015489	chr2R	15022882	15022938	mdg1	28	7447	5.0	9.0	7.0	3.5	7503	chr2R	15015435	intron	hbs +	chr2R	15019186	intron	hbs +	chr2R	15022938	intron	hbs +	chr2R_28_15015001	chr2R_15015001	RAL-307_100b
1424	chr2R	15119299	15119349	chr2R	15127799	15127828	Tirant	30	8502	13.5	7.5	10.5	2.6	8529	chr2R	15119299	intron	chn +	chr2R	15123564	intron	chn +	chr2R	15127828	intron	chn +	chr2R_30_15120001	chr2R_15120001	RAL-307_100b
1457	chr2R	16539613	16539634	chr2R	16544844	16544865	copia	5	5229	15.0	0.0	7.5	0.6	5252	chr2R	16539613	intergenic	not near genes	chr2R	16542239	intergenic	not near genes	chr2R	16544865	intergenic	not near genes	chr2R_5_16540001	chr2R_16540001	RAL-307_100b
1478	chr2R	17147221	17147268	chr2R	17152277	17152292	jockey	37	5053	19.5	14.0	16.8	2.1	5071	chr2R	17147221	intergenic	not near genes	chr2R	17149756	intergenic	not near genes	chr2R	17152292	intergenic	not near genes	chr2R_37_17145001	chr2R_17145001	RAL-307_100b
1480	chr2R	17176352	17176367	chr2R	17182567	17182582	diver	10	6215	3.0	26.5	14.8	0.6	6230	chr2R	17176352	intergenic	not near genes	chr2R	17179467	intergenic	not near genes	chr2R	17182582	intergenic	not near genes	chr2R_10_17175001	chr2R_17175001	RAL-307_100b
1481	chr2R	17176371	17176382	chr2R	17182557	17182597	diver	8	6209	2.5	21.5	12.0	0.6	6226	chr2R	17176371	intergenic	not near genes	chr2R	17179484	intergenic	not near genes	chr2R	17182597	intergenic	not near genes	chr2R_8_17175001	chr2R_17175001	RAL-307_100b
1483	chr2R	17236488	17236540	chr2R	17241710	17241743	copia	47	5225	16.0	16.0	16.0	2.8	5255	chr2R	17236488	intron	mbl +	chr2R	17239116	intron	mbl +	chr2R	17241743	intron	mbl +	chr2R_47_17235001	chr2R_17235001	RAL-307_100b
1492	chr2R	17485892	17485942	chr2R	17490687	17490735	F-element	31	4792	12.0	11.0	11.5	2.5	4843	chr2R	17485892	5` UTR,intron	CG43110 -,NT5E-2 +	chr2R	17488314	intron	NT5E-2 +	chr2R	17490735	intron	NT5E-2 +	chr2R_31_17485001	chr2R_17485001	RAL-307_100b
1499	chr2R	17782342	17782391	chr2R	17783570	17783619	pogo	26	1227	12.5	14.5	13.5	1.8	1277	chr2R	17782342	intergenic	CG33981 -,fab1 -	chr2R	17782980	intergenic	not near genes	chr2R	17783619	intergenic	mir-31a -	chr2R_26_17780001	chr2R_17780001	RAL-307_100b
1500	chr2R	17783999	17784056	chr2R	17784265	17784322	pogo	53	262	17.5	19.0	18.2	2.8	323	chr2R	17783999	intergenic	mir-31a -	chr2R	17784160	intergenic	mir-31a -	chr2R	17784322	intergenic	mir-31a -	chr2R_53_17780001	chr2R_17780001	RAL-307_100b
1513	chr2R	18045647	18045700	chr2R	18046024	18046077	jockey	41	375	8.5	9.5	9.0	4.1	430	chr2R	18045647	intergenic	not near genes	chr2R	18045862	intergenic	not near genes	chr2R	18046077	intergenic	CG5767 -	chr2R_41_18045001	chr2R_18045001	RAL-307_100b
1517	chr2R	18111670	18111689	chr2R	18115557	18115582	F-element	17	3892	30.5	17.5	24.0	0.7	3912	chr2R	18111670	intergenic	not near genes	chr2R	18113626	intergenic	not near genes	chr2R	18115582	intergenic	not near genes	chr2R_17_18110001	chr2R_18110001	RAL-307_100b
1518	chr2R	18111690	18111714	chr2R	18115553	18115607	F-element	20	3887	20.0	16.5	18.2	1.0	3917	chr2R	18111690	intergenic	not near genes	chr2R	18113648	intergenic	not near genes	chr2R	18115607	intergenic	not near genes	chr2R_20_18110001	chr2R_18110001	RAL-307_100b
1525	chr2R	18358371	18358386	chr2R	18372608	18372623	roo	14	14235	30.0	0.5	15.2	0.9	14252	chr2R	18358371	intergenic	not near genes	chr2R	18365497	intergenic	not near genes	chr2R	18372623	intergenic	not near genes	chr2R_14_18365001	chr2R_18365001	RAL-307_100b
1526	chr2R	18358388	18358397	chr2R	18372599	18372634	roo	12	14235	25.0	0.5	12.8	0.9	14246	chr2R	18358388	intergenic	not near genes	chr2R	18365511	intergenic	not near genes	chr2R	18372634	intergenic	not near genes	chr2R_12_18365001	chr2R_18365001	RAL-307_100b
1540	chr2R	18487814	18487818	chr2R	18495290	18495294	blood	4	7476	14.0	13.5	13.8	0.3	7480	chr2R	18487814	intron	CG30116 -	chr2R	18491554	intron	CG30116 -	chr2R	18495294	intron	CG30116 -	chr2R_4_18490001	chr2R_18490001	RAL-307_100b
1541	chr2R	18487820	18487854	chr2R	18495289	18495349	blood	16	7487	0.0	13.0	6.5	2.1	7529	chr2R	18487820	intron	CG30116 -	chr2R	18491584	intron	CG30116 -	chr2R	18495349	intron	CG30116 -	chr2R_16_18490001	chr2R_18490001	RAL-307_100b
1545	chr2R	18575770	18575830	chr2R	18581983	18582043	3S18	54	6204	11.5	9.5	10.5	4.7	6273	chr2R	18575770	intron	GEFmeso -	chr2R	18578906	intron	GEFmeso -	chr2R	18582043	intron	GEFmeso -	chr2R_54_18575001	chr2R_18575001	RAL-307_100b
1548	chr2R	18590845	18590847	chr2R	18600022	18600024	roo	4	9177	43.5	20.5	32.0	0.1	9179	chr2R	18590845	intron	GEFmeso -	chr2R	18595434	intron	GEFmeso -	chr2R	18600024	intron	GEFmeso -	chr2R_4_18595001	chr2R_18595001	RAL-307_100b
1549	chr2R	18590848	18590900	chr2R	18600019	18600074	roo	58	9173	15.0	18.0	16.5	3.3	9226	chr2R	18590848	intron	GEFmeso -	chr2R	18595461	intron	GEFmeso -	chr2R	18600074	intron	GEFmeso -	chr2R_58_18595001	chr2R_18595001	RAL-307_100b
1580	chr2R	19715831	19715844	chr2R	19723325	19723327	blood	14	7492	43.0	20.5	31.8	0.4	7496	chr2R	19715831	intergenic	not near genes	chr2R	19719579	intergenic	not near genes	chr2R	19723327	intergenic	not near genes	chr2R_14_19715001	chr2R_19715001	RAL-307_100b
1581	chr2R	19715845	19715857	chr2R	19723324	19723349	blood	13	7489	38.5	18.5	28.5	0.4	7504	chr2R	19715845	intergenic	not near genes	chr2R	19719597	intergenic	not near genes	chr2R	19723349	intergenic	not near genes	chr2R_13_19715001	chr2R_19715001	RAL-307_100b
1583	chr2R	19776570	19776581	chr2R	19779918	19779929	jockey	7	3348	39.5	22.0	30.8	0.2	3359	chr2R	19776570	intergenic	not near genes	chr2R	19778250	intergenic	not near genes	chr2R	19779929	intergenic	not near genes	chr2R_7_19775001	chr2R_19775001	RAL-307_100b
1584	chr2R	19776582	19776623	chr2R	19779916	19779971	jockey	37	3345	17.0	21.0	19.0	1.9	3389	chr2R	19776582	intergenic	not near genes	chr2R	19778276	intergenic	not near genes	chr2R	19779971	intergenic	not near genes	chr2R_37_19775001	chr2R_19775001	RAL-307_100b
1586	chr2R	19914823	19914839	chr2R	19922260	19922276	mdg1	16	7437	24.0	14.0	19.0	0.8	7453	chr2R	19914823	intergenic	not near genes	chr2R	19918550	intergenic	not near genes	chr2R	19922276	intergenic	not near genes	chr2R_16_19915001	chr2R_19915001	RAL-307_100b
1587	chr2R	19914843	19914872	chr2R	19922259	19922308	mdg1	22	7434	13.0	13.5	13.2	1.5	7465	chr2R	19914843	intergenic	not near genes	chr2R	19918576	intergenic	not near genes	chr2R	19922308	intergenic	not near genes	chr2R_22_19915001	chr2R_19915001	RAL-307_100b
1588	chr2R	19957407	19957426	chr2R	19962634	19962651	copia	16	5226	33.0	13.5	23.2	0.7	5244	chr2R	19957407	intergenic	CG44623 +	chr2R	19960029	intergenic	not near genes	chr2R	19962651	intergenic	not near genes	chr2R_16_19960001	chr2R_19960001	RAL-307_100b
1589	chr2R	19957434	19957464	chr2R	19962630	19962681	copia	24	5217	17.0	9.5	13.2	1.7	5247	chr2R	19957434	intergenic	CG44623 +	chr2R	19960058	intergenic	not near genes	chr2R	19962681	intergenic	not near genes	chr2R_24_19960001	chr2R_19960001	RAL-307_100b
1592	chr2R	20069212	20069230	chr2R	20071876	20071893	opus	4	2663	0.5	11.5	6.0	0.6	2681	chr2R	20069212	intergenic	not near genes	chr2R	20070552	intergenic	not near genes	chr2R	20071893	intergenic	not near genes	chr2R_4_20070001	chr2R_20070001	RAL-307_100b
1593	chr2R	20069233	20069255	chr2R	20071872	20071913	opus	25	2653	1.0	10.0	5.5	3.8	2680	chr2R	20069233	intergenic	not near genes	chr2R	20070573	intergenic	not near genes	chr2R	20071913	intergenic	not near genes	chr2R_25_20070001	chr2R_20070001	RAL-307_100b
1616	chr2R	20739419	20739443	chr2R	20744212	20744236	F-element	11	4791	28.0	16.5	22.2	0.5	4817	chr2R	20739419	intron	dpr +	chr2R	20741828	intron	dpr +	chr2R	20744236	intron	dpr +	chr2R_11_20740001	chr2R_20740001	RAL-307_100b
1617	chr2R	20739446	20739476	chr2R	20744211	20744240	F-element	29	4788	12.5	16.5	14.5	1.9	4794	chr2R	20739446	intron	dpr +	chr2R	20741843	intron	dpr +	chr2R	20744240	intron	dpr +	chr2R_29_20740001	chr2R_20740001	RAL-307_100b
1619	chr2R	20783287	20783330	chr2R	20788084	20788127	F-element	42	4793	22.0	22.5	22.2	1.8	4840	chr2R	20783287	intergenic	not near genes	chr2R	20785707	intergenic	not near genes	chr2R	20788127	intergenic	CG43666 -	chr2R_42_20785001	chr2R_20785001	RAL-307_100b
1630	chr2R	21151135	21151145	chr2R	21153768	21153803	opus	10	2655	0.0	17.0	8.5	1.1	2668	chr2R	21151135	intron	CG30389 -	chr2R	21152469	intron	CG30389 -	chr2R	21153803	intron	CG30389 -	chr2R_10_21150001	chr2R_21150001	RAL-307_100b
1652	chr2R	21738262	21738290	chr2R	21747437	21747475	roo	23	9180	17.5	15.5	16.5	1.3	9213	chr2R	21738262	intergenic	not near genes	chr2R	21742868	intergenic	not near genes	chr2R	21747475	intergenic	not near genes	chr2R_23_21740001	chr2R_21740001	RAL-307_100b
1653	chr2R	21738291	21738310	chr2R	21747435	21747460	roo	19	9153	6.0	14.5	10.2	1.7	9169	chr2R	21738291	intergenic	not near genes	chr2R	21742876	intergenic	not near genes	chr2R	21747460	intergenic	not near genes	chr2R_19_21740001	chr2R_21740001	RAL-307_100b
1654	chr2R	21753064	21753114	chr2R	21753574	21753624	roo	55	508	18.0	15.0	16.5	3.1	560	chr2R	21753064	intergenic	not near genes	chr2R	21753344	intergenic	not near genes	chr2R	21753624	intergenic	not near genes	chr2R_55_21750001	chr2R_21750001	RAL-307_100b
1657	chr2R	21809504	21809511	chr2R	21817769	21817776	roo	7	8264	40.5	22.0	31.2	0.2	8272	chr2R	21809504	intergenic	not near genes	chr2R	21813640	intergenic	not near genes	chr2R	21817776	intergenic	not near genes	chr2R_7_21810001	chr2R_21810001	RAL-307_100b
1658	chr2R	21809512	21809558	chr2R	21817766	21817803	roo	32	8261	15.0	20.0	17.5	1.7	8291	chr2R	21809512	intergenic	not near genes	chr2R	21813658	intergenic	not near genes	chr2R	21817803	intergenic	not near genes	chr2R_32_21810001	chr2R_21810001	RAL-307_100b
1680	chr2R	22349672	22349704	chr2R	22351481	22351500	jockey	27	1807	25.5	20.5	23.0	1.1	1828	chr2R	22349672	intron	Liprin-gamma -	chr2R	22350586	intron	Liprin-gamma -	chr2R	22351500	intron	Liprin-gamma -	chr2R_27_22350001	chr2R_22350001	RAL-307_100b
1681	chr2R	22349705	22349722	chr2R	22351477	22351531	jockey	17	1803	17.5	19.0	18.2	0.9	1826	chr2R	22349705	intron	Liprin-gamma -	chr2R	22350618	intron	Liprin-gamma -	chr2R	22351531	intron	Liprin-gamma -	chr2R_17_22350001	chr2R_22350001	RAL-307_100b
1683	chr2R	22360362	22360372	chr2R	22360819	22360829	jockey	12	458	34.5	16.5	25.5	0.5	467	chr2R	22360362	intron	Liprin-gamma -	chr2R	22360596	intron	Liprin-gamma -	chr2R	22360829	intron	Liprin-gamma -	chr2R_12_22360001	chr2R_22360001	RAL-307_100b
1684	chr2R	22360373	22360381	chr2R	22360815	22360828	jockey	5	447	30.0	14.5	22.2	0.2	455	chr2R	22360373	intron	Liprin-gamma -	chr2R	22360600	intron	Liprin-gamma -	chr2R	22360828	intron	Liprin-gamma -	chr2R_5_22360001	chr2R_22360001	RAL-307_100b
1692	chr2R	22525724	22525781	chr2R	22529304	22529356	jockey	53	3576	18.0	23.0	20.5	2.5	3632	chr2R	22525724	intron	px -	chr2R	22527540	intron	px -	chr2R	22529356	intron	px -	chr2R_53_22525001	chr2R_22525001	RAL-307_100b
1693	chr2R	22580436	22580444	chr2R	22586601	22586619	diver	8	6172	16.0	9.0	12.5	0.6	6183	chr2R	22580436	intron	dnr1 -	chr2R	22583528	intron	dnr1 -	chr2R	22586619	intron	dnr1 -	chr2R_8_22580001	chr2R_22580001	RAL-307_100b
1696	chr2R	22774943	22774994	chr2R	22775387	22775420	jockey	39	440	21.5	21.0	21.2	1.8	477	chr2R	22774943	intron	CG42260 -	chr2R	22775182	intron	CG42260 -	chr2R	22775420	intron	CG42260 -	chr2R_39_22775001	chr2R_22775001	RAL-307_100b
1701	chr2R	22843028	22843046	chr2R	22845019	22845037	flea	12	1991	18.5	22.0	20.2	0.6	2009	chr2R	22843028	intergenic	CG9826 +	chr2R	22844032	intergenic	not near genes	chr2R	22845037	intergenic	not near genes	chr2R_12_22840001	chr2R_22840001	RAL-307_100b
1705	chr2R	22958779	22958792	chr2R	22963895	22963900	flea	6	5116	23.0	14.5	18.8	0.3	5121	chr2R	22958779	intergenic	not near genes	chr2R	22961340	intergenic	not near genes	chr2R	22963900	intergenic	not near genes	chr2R_6_22960001	chr2R_22960001	RAL-307_100b
1706	chr2R	22958793	22958813	chr2R	22963891	22963896	flea	5	5104	12.5	14.0	13.2	0.4	5103	chr2R	22958793	intergenic	not near genes	chr2R	22961344	intergenic	not near genes	chr2R	22963896	intergenic	not near genes	chr2R_5_22960001	chr2R_22960001	RAL-307_100b
1732	chr2R	23402639	23402642	chr2R	23407710	23407743	flea	6	5096	0.0	24.0	12.0	0.5	5104	chr2R	23402639	intergenic	CG3520 -	chr2R	23405191	intergenic	not near genes	chr2R	23407743	intergenic	not near genes	chr2R_6_23405001	chr2R_23405001	RAL-307_100b
1735	chr2R	23529558	23529604	chr2R	23537149	23537175	412	26	7589	16.0	22.5	19.2	1.3	7617	chr2R	23529558	intron	bw -	chr2R	23533366	intron	bw -	chr2R	23537175	exon	bw -	chr2R_26_23530001	chr2R_23530001	RAL-307_100b
1742	chr2R	23914272	23914330	chr2R	23921921	23921976	412	64	7644	16.0	19.0	17.5	3.5	7704	chr2R	23914272	exon	kcc +	chr2R	23918124	intron	kcc +	chr2R	23921976	exon	kcc +	chr2R_64_23915001	chr2R_23915001	RAL-307_100b
1745	chr2R	24147045	24147052	chr2R	24154648	24154655	412	8	7602	43.0	26.0	34.5	0.2	7610	chr2R	24147045	intron	Dat +	chr2R	24150850	intron	Dat +	chr2R	24154655	intron	Dat +	chr2R_8_24150001	chr2R_24150001	RAL-307_100b
1746	chr2R	24147053	24147098	chr2R	24154646	24154686	412	43	7597	16.0	24.0	20.0	2.0	7633	chr2R	24147053	intron	Dat +	chr2R	24150870	intron	Dat +	chr2R	24154686	intron	Dat +	chr2R_43_24150001	chr2R_24150001	RAL-307_100b
1747	chr2R	24177210	24177268	chr2R	24184720	24184778	412	32	7509	14.0	1.5	7.8	3.6	7568	chr2R	24177210	3` UTR	Nop60B +	chr2R	24180994	intron	Nop60B +	chr2R	24184778	3` UTR	Nop60B +	chr2R_32_24180001	chr2R_24180001	RAL-307_100b
1749	chr2R	24272801	24272814	chr2R	24272904	24272917	roo	7	102	28.5	35.5	32.0	0.2	116	chr2R	24272801	intergenic	not near genes	chr2R	24272859	intergenic	not near genes	chr2R	24272917	intergenic	not near genes	chr2R_7_24270001	chr2R_24270001	RAL-307_100b
1757	chr2R	24353403	24353458	chr2R	24361790	24361829	roo	26	8383	18.0	21.5	19.8	1.2	8426	chr2R	24353403	intron,intron	bs +,CR44811 -	chr2R	24357616	intron,intron	bs +,CR44811 -	chr2R	24361829	intron,intron	bs +,CR44811 -	chr2R_26_24355001	chr2R_24355001	RAL-307_100b
1766	chr2R	24647568	24647572	chr2R	24655150	24655154	412	5	7582	32.5	16.0	24.2	0.2	7586	chr2R	24647568	intergenic	not near genes	chr2R	24651361	intergenic	not near genes	chr2R	24655154	intergenic	not near genes	chr2R_5_24650001	chr2R_24650001	RAL-307_100b
1767	chr2R	24647576	24647616	chr2R	24655147	24655198	412	33	7578	13.5	13.0	13.2	2.3	7622	chr2R	24647576	intergenic	not near genes	chr2R	24651387	intergenic	not near genes	chr2R	24655198	intergenic	not near genes	chr2R_33_24650001	chr2R_24650001	RAL-307_100b
1771	chr2R	24727860	24727887	chr2R	24735393	24735410	mdg1	22	7530	20.0	16.5	18.2	1.1	7550	chr2R	24727860	intron	Mid1 -	chr2R	24731635	intron	Mid1 -	chr2R	24735410	intron	Mid1 -	chr2R_22_24730001	chr2R_24730001	RAL-307_100b
1772	chr2R	24727888	24727917	chr2R	24735390	24735437	mdg1	47	7524	12.0	15.0	13.5	3.2	7549	chr2R	24727888	intron	Mid1 -	chr2R	24731662	intron	Mid1 -	chr2R	24735437	intron	Mid1 -	chr2R_47_24730001	chr2R_24730001	RAL-307_100b
1773	chr2R	24763591	24763600	chr2R	24765592	24765600	G2	10	2000	36.5	22.0	29.2	0.3	2009	chr2R	24763591	exon	CG3894 +	chr2R	24764596	intron	CG3894 +	chr2R	24765600	exon	CG3894 +	chr2R_10_24760001	chr2R_24760001	RAL-307_100b
1774	chr2R	24763606	24763644	chr2R	24765591	24765642	G2	52	1995	12.0	21.5	16.8	2.9	2036	chr2R	24763606	exon	CG3894 +	chr2R	24764624	intron	CG3894 +	chr2R	24765642	exon	CG3894 +	chr2R_52_24760001	chr2R_24760001	RAL-307_100b
1791	chr2R	25141631	25141638	chr2R	25159346	25159353	roo	9	17715	33.0	13.5	23.2	0.4	17722	chr2R	25141631	intergenic	not near genes	chr2R	25150492	intergenic	not near genes	chr2R	25159353	intergenic	not near genes	chr2R_9_25150001	chr2R_25150001	RAL-307_100b
1792	chr2R	25141639	25141682	chr2R	25159343	25159397	roo	46	17711	12.0	13.0	12.5	3.4	17758	chr2R	25141639	intergenic	not near genes	chr2R	25150518	intergenic	not near genes	chr2R	25159397	intergenic	not near genes	chr2R_46_25150001	chr2R_25150001	RAL-307_100b
1801	chr3L	110191	110199	chr3L	119383	119391	roo	5	9192	29.5	18.5	24.0	0.2	9200	chr3L	110191	intergenic	not near genes	chr3L	114791	intergenic	not near genes	chr3L	119391	intergenic	not near genes	chr3L_5_110001	chr3L_110001	RAL-307_100b
1802	chr3L	110203	110244	chr3L	119381	119436	roo	38	9187	14.0	17.0	15.5	2.3	9233	chr3L	110203	intergenic	not near genes	chr3L	114820	intergenic	not near genes	chr3L	119436	intergenic	not near genes	chr3L_38_110001	chr3L_110001	RAL-307_100b
1804	chr3L	402666	402669	chr3L	409744	409747	297	5	7078	51.0	22.0	36.5	0.1	7081	chr3L	402666	intergenic	not near genes	chr3L	406206	intergenic	not near genes	chr3L	409747	intergenic	not near genes	chr3L_5_405001	chr3L_405001	RAL-307_100b
1805	chr3L	402671	402718	chr3L	409740	409785	297	58	7073	20.0	18.0	19.0	2.9	7114	chr3L	402671	intergenic	not near genes	chr3L	406228	intergenic	not near genes	chr3L	409785	intergenic	not near genes	chr3L_58_405001	chr3L_405001	RAL-307_100b
1817	chr3L	789895	789904	chr3L	790405	790414	roo	7	510	27.5	15.5	21.5	0.3	519	chr3L	789895	intergenic	not near genes	chr3L	790154	intergenic	not near genes	chr3L	790414	intergenic	not near genes	chr3L_7_790001	chr3L_790001	RAL-307_100b
1818	chr3L	789907	789946	chr3L	790402	790415	roo	36	505	10.5	14.0	12.2	2.7	508	chr3L	789907	intergenic	not near genes	chr3L	790161	intergenic	not near genes	chr3L	790415	intergenic	not near genes	chr3L_36_790001	chr3L_790001	RAL-307_100b
1820	chr3L	857973	858032	chr3L	866479	866523	Tirant	52	8498	14.5	8.5	11.5	4.2	8550	chr3L	857973	intergenic	not near genes	chr3L	862248	intergenic	not near genes	chr3L	866523	5` UTR	CG12502 +	chr3L_52_860001	chr3L_860001	RAL-307_100b
1825	chr3L	925150	925210	chr3L	932601	932642	mdg1	52	7448	11.5	15.5	13.5	3.6	7492	chr3L	925150	intron	Glut1 +	chr3L	928896	intron	Glut1 +	chr3L	932642	intron	Glut1 +	chr3L_52_925001	chr3L_925001	RAL-307_100b
1827	chr3L	939751	939759	chr3L	940897	940905	jockey	10	1146	44.0	20.5	32.2	0.3	1154	chr3L	939751	intron	Glut1 +	chr3L	940328	intron	Glut1 +	chr3L	940905	intron	Glut1 +	chr3L_10_940001	chr3L_940001	RAL-307_100b
1828	chr3L	939760	939760	chr3L	940895	940906	jockey	4	1142	44.0	19.5	31.8	0.1	1146	chr3L	939760	intron	Glut1 +	chr3L	940333	intron	Glut1 +	chr3L	940906	intron	Glut1 +	chr3L_4_940001	chr3L_940001	RAL-307_100b
1829	chr3L	939762	939798	chr3L	940893	940936	jockey	41	1143	23.0	19.5	21.2	1.8	1174	chr3L	939762	intron	Glut1 +	chr3L	940349	intron	Glut1 +	chr3L	940936	intron	Glut1 +	chr3L_41_940001	chr3L_940001	RAL-307_100b
1837	chr3L	1047329	1047379	chr3L	1055166	1055216	412	18	7831	7.0	13.0	10.0	1.6	7887	chr3L	1047329	intron	bab1 -	chr3L	1051272	intron	bab1 -	chr3L	1055216	intron	bab1 -	chr3L_18_1050001	chr3L_1050001	RAL-307_100b
1838	chr3L	1047380	1047385	chr3L	1055162	1055217	412	22	7808	6.5	10.5	8.5	2.3	7837	chr3L	1047380	intron	bab1 -	chr3L	1051298	intron	bab1 -	chr3L	1055217	intron	bab1 -	chr3L_22_1050001	chr3L_1050001	RAL-307_100b
1842	chr3L	1154122	1154161	chr3L	1163281	1163326	roo	29	9171	11.5	12.5	12.0	2.2	9204	chr3L	1154122	intron	bab2 -	chr3L	1158724	intron	bab2 -	chr3L	1163326	intron	bab2 -	chr3L_29_1155001	chr3L_1155001	RAL-307_100b
1844	chr3L	1219569	1219621	chr3L	1227327	1227379	412	65	7749	13.5	23.0	18.2	3.4	7810	chr3L	1219569	intron	mwh +	chr3L	1223474	intron	mwh +	chr3L	1227379	intron	mwh +	chr3L_65_1220001	chr3L_1220001	RAL-307_100b
1851	chr3L	1424753	1424772	chr3L	1430014	1430029	Rt1a	16	5262	10.5	15.5	13.0	1.1	5276	chr3L	1424753	intron	Ptp61F -	chr3L	1427391	intron	Ptp61F -	chr3L	1430029	intron	Ptp61F -	chr3L_16_1425001	chr3L_1425001	RAL-307_100b
1852	chr3L	1485715	1485725	chr3L	1486911	1486921	1360	7	1196	29.0	38.0	33.5	0.2	1206	chr3L	1485715	intron	stet -	chr3L	1486318	intron	stet -	chr3L	1486921	intron	stet -	chr3L_7_1485001	chr3L_1485001	RAL-307_100b
1853	chr3L	1485727	1485742	chr3L	1486908	1486908	1360	15	1189	17.0	35.5	26.2	0.6	1181	chr3L	1485727	intron	stet -	chr3L	1486318	intron	stet -	chr3L	1486908	intron	stet -	chr3L_15_1485001	chr3L_1485001	RAL-307_100b
1854	chr3L	1505975	1506030	chr3L	1513597	1513652	17.6	59	7617	15.0	14.0	14.5	3.8	7677	chr3L	1505975	intron,intron	Psa +,cue -	chr3L	1509814	intron,intron	Psa +,cue -	chr3L	1513652	intron,intron	Psa +,cue -	chr3L_59_1505001	chr3L_1505001	RAL-307_100b
1859	chr3L	1740835	1740841	chr3L	1741101	1741109	pogo	4	268	37.0	21.0	29.0	0.1	274	chr3L	1740835	intron	Gk +	chr3L	1740972	intron	Gk +	chr3L	1741109	intron	Gk +	chr3L_4_1740001	chr3L_1740001	RAL-307_100b
1860	chr3L	1740842	1740870	chr3L	1741100	1741107	pogo	20	263	23.5	20.5	22.0	0.9	265	chr3L	1740842	intron	Gk +	chr3L	1740974	intron	Gk +	chr3L	1741107	intron	Gk +	chr3L_20_1740001	chr3L_1740001	RAL-307_100b
1861	chr3L	1740871	1740884	chr3L	1741097	1741117	pogo	9	258	16.5	18.5	17.5	0.5	246	chr3L	1740871	intron	Gk +	chr3L	1740994	intron	Gk +	chr3L	1741117	intron	Gk +	chr3L_9_1740001	chr3L_1740001	RAL-307_100b
1879	chr3L	2108229	2108282	chr3L	2113452	2113511	copia	19	5228	1.0	8.5	4.8	3.3	5282	chr3L	2108229	intron	sls -	chr3L	2110870	intron	sls -	chr3L	2113511	intron	sls -	chr3L_19_2110001	chr3L_2110001	RAL-307_100b
1898	chr3L	2447480	2447531	chr3L	2456661	2456712	roo	46	9174	19.5	20.0	19.8	2.2	9232	chr3L	2447480	intron	CG45186 +	chr3L	2452096	intron	CG45186 +	chr3L	2456712	intron	CG45186 +	chr3L_46_2450001	chr3L_2450001	RAL-307_100b
1899	chr3L	2447532	2447534	chr3L	2456658	2456715	roo	6	9160	19.0	16.5	17.8	0.3	9183	chr3L	2447532	intron	CG45186 +	chr3L	2452124	intron	CG45186 +	chr3L	2456715	intron	CG45186 +	chr3L_6_2450001	chr3L_2450001	RAL-307_100b
1912	chr3L	2751432	2751470	chr3L	2755752	2755767	F-element	29	4319	23.0	19.5	21.2	1.3	4335	chr3L	2751432	intron	Mrtf -	chr3L	2753600	intron	Mrtf -	chr3L	2755767	intron	Mrtf -	chr3L_29_2750001	chr3L_2750001	RAL-307_100b
1922	chr3L	2927815	2927826	chr3L	2936117	2936128	Tirant	9	8302	29.0	12.0	20.5	0.4	8313	chr3L	2927815	intron	Shab +	chr3L	2931972	intron	Shab +	chr3L	2936128	intron	Shab +	chr3L_9_2930001	chr3L_2930001	RAL-307_100b
1923	chr3L	2927828	2927872	chr3L	2936115	2936174	Tirant	38	8298	11.0	11.5	11.2	3.1	8346	chr3L	2927828	intron	Shab +	chr3L	2932001	intron	Shab +	chr3L	2936174	intron	Shab +	chr3L_38_2930001	chr3L_2930001	RAL-307_100b
1924	chr3L	2966696	2966723	chr3L	2974146	2974173	mdg1	15	7450	21.0	10.0	15.5	0.9	7477	chr3L	2966696	intergenic	not near genes	chr3L	2970434	intergenic	not near genes	chr3L	2974173	intergenic	not near genes	chr3L_15_2970001	chr3L_2970001	RAL-307_100b
1931	chr3L	3040299	3040330	chr3L	3042113	3042139	S-element	19	1806	30.0	0.5	15.2	1.2	1840	chr3L	3040299	3` UTR	CG2162 +	chr3L	3041219	intergenic	not near genes	chr3L	3042139	intergenic	Jafrac2 +	chr3L_19_3040001	chr3L_3040001	RAL-307_100b
1932	chr3L	3051718	3051744	chr3L	3051985	3052011	pogo	29	266	25.0	8.5	16.8	1.6	293	chr3L	3051718	3` UTR	CG32485 +	chr3L	3051864	intergenic	CG32485 +	chr3L	3052011	intergenic	CG32485 +	chr3L_29_3050001	chr3L_3050001	RAL-307_100b
1933	chr3L	3061259	3061266	chr3L	3069867	3069874	Tirant	5	8607	36.0	14.0	25.0	0.2	8615	chr3L	3061259	intron	CG32486 -	chr3L	3065566	intron	CG32486 -	chr3L	3069874	intron	CG32486 -	chr3L_5_3065001	chr3L_3065001	RAL-307_100b
1934	chr3L	3061267	3061315	chr3L	3069865	3069923	Tirant	41	8601	11.0	13.5	12.2	3.1	8656	chr3L	3061267	intron	CG32486 -	chr3L	3065595	intron	CG32486 -	chr3L	3069923	intron	CG32486 -	chr3L_41_3065001	chr3L_3065001	RAL-307_100b
1938	chr3L	3281413	3281432	chr3L	3281932	3281942	Doc	10	518	24.5	19.5	22.0	0.4	529	chr3L	3281413	intron	CG12017 +	chr3L	3281678	intron	CG12017 +	chr3L	3281942	intron	CG12017 +	chr3L_10_3280001	chr3L_3280001	RAL-307_100b
1939	chr3L	3281433	3281477	chr3L	3281931	3281962	Doc	20	510	5.0	19.5	12.2	1.5	529	chr3L	3281433	intron	CG12017 +	chr3L	3281698	intron	CG12017 +	chr3L	3281962	intron	CG12017 +	chr3L_20_3280001	chr3L_3280001	RAL-307_100b
1948	chr3L	3475048	3475112	chr3L	3475518	3475546	jockey	32	463	8.0	20.5	14.2	2.1	498	chr3L	3475048	intron	CG42324 +	chr3L	3475297	intron	CG42324 +	chr3L	3475546	intron	CG42324 +	chr3L_32_3475001	chr3L_3475001	RAL-307_100b
1955	chr3L	3601272	3601327	chr3L	3606608	3606663	copia	47	5333	16.5	12.5	14.5	3.0	5391	chr3L	3601272	intron	Eip63E +	chr3L	3603968	intron	Eip63E +	chr3L	3606663	intron	Eip63E +	chr3L_47_3600001	chr3L_3600001	RAL-307_100b
1963	chr3L	3833717	3833769	chr3L	3833978	3834035	pogo	28	264	7.0	4.5	5.8	4.1	318	chr3L	3833717	intron	enc +	chr3L	3833876	intron	enc +	chr3L	3834035	intron	enc +	chr3L_28_3830001	chr3L_3830001	RAL-307_100b
1983	chr3L	4328730	4328753	chr3L	4336248	4336276	412	22	7522	17.0	20.5	18.8	1.1	7546	chr3L	4328730	intron	Cip4 -	chr3L	4332503	intron	Cip4 -	chr3L	4336276	exon	Cip4 -	chr3L_22_4330001	chr3L_4330001	RAL-307_100b
1984	chr3L	4328755	4328761	chr3L	4336237	4336284	412	6	7509	12.5	17.0	14.8	0.4	7529	chr3L	4328755	intron	Cip4 -	chr3L	4332520	intron	Cip4 -	chr3L	4336284	exon	Cip4 -	chr3L_6_4330001	chr3L_4330001	RAL-307_100b
2006	chr3L	4901103	4901161	chr3L	4907318	4907376	diver	36	6214	11.0	14.0	12.5	2.7	6273	chr3L	4901103	intergenic	CG13704 +	chr3L	4904240	intergenic	not near genes	chr3L	4907376	intergenic	not near genes	chr3L_36_4900001	chr3L_4900001	RAL-307_100b
2009	chr3L	5034142	5034192	chr3L	5043309	5043344	roo	38	9174	10.5	10.0	10.2	3.4	9202	chr3L	5034142	intron	Con -	chr3L	5038743	intron	Con -	chr3L	5043344	intron	Con -	chr3L_38_5035001	chr3L_5035001	RAL-307_100b
2010	chr3L	5045439	5045478	chr3L	5050245	5050249	Doc	31	4805	14.5	13.5	14.0	2.1	4810	chr3L	5045439	intron	Con -	chr3L	5047844	intron	Con -	chr3L	5050249	intron	Con -	chr3L_31_5045001	chr3L_5045001	RAL-307_100b
2020	chr3L	5299129	5299184	chr3L	5306590	5306617	Quasimodo	27	7457	11.5	7.0	9.2	2.6	7488	chr3L	5299129	intergenic	not near genes	chr3L	5302873	intergenic	not near genes	chr3L	5306617	intergenic	not near genes	chr3L_27_5300001	chr3L_5300001	RAL-307_100b
2025	chr3L	5458081	5458094	chr3L	5466662	5466721	Max-element	7	8620	11.5	19.5	15.5	0.4	8640	chr3L	5458081	intergenic	not near genes	chr3L	5462401	intergenic	not near genes	chr3L	5466721	intergenic	not near genes	chr3L_7_5460001	chr3L_5460001	RAL-307_100b
2030	chr3L	5537696	5537756	chr3L	5538063	5538100	jockey	28	360	15.0	16.5	15.8	1.7	404	chr3L	5537696	intergenic	not near genes	chr3L	5537898	intergenic	not near genes	chr3L	5538100	intergenic	CG10625 -	chr3L_28_5535001	chr3L_5535001	RAL-307_100b
2036	chr3L	5910006	5910063	chr3L	5910272	5910302	pogo	45	263	14.0	16.5	15.2	2.8	296	chr3L	5910006	intron	CG13288 +	chr3L	5910154	intron	CG13288 +	chr3L	5910302	intron	CG13288 +	chr3L_45_5910001	chr3L_5910001	RAL-307_100b
2037	chr3L	5926300	5926332	chr3L	5926511	5926547	BS	28	210	21.0	21.0	21.0	1.3	247	chr3L	5926300	intron	Vap-33B +	chr3L	5926424	intron	Vap-33B +	chr3L	5926547	intron	Vap-33B +	chr3L_28_5925001	chr3L_5925001	RAL-307_100b
2038	chr3L	5926334	5926350	chr3L	5926504	5926538	BS	16	207	14.0	15.5	14.8	1.0	204	chr3L	5926334	intron	Vap-33B +	chr3L	5926436	intron	Vap-33B +	chr3L	5926538	intron	Vap-33B +	chr3L_16_5925001	chr3L_5925001	RAL-307_100b
2041	chr3L	6001659	6001669	chr3L	6004384	6004394	jockey	10	2725	34.0	2.5	18.2	0.5	2735	chr3L	6001659	intron	PVRAP +	chr3L	6003026	intron	PVRAP +	chr3L	6004394	intron	PVRAP +	chr3L_10_6000001	chr3L_6000001	RAL-307_100b
2042	chr3L	6001670	6001717	chr3L	6004383	6004442	jockey	26	2723	13.0	2.5	7.8	3.0	2772	chr3L	6001670	intron	PVRAP +	chr3L	6003056	intron	PVRAP +	chr3L	6004442	intron	PVRAP +	chr3L_26_6000001	chr3L_6000001	RAL-307_100b
2043	chr3L	6040341	6040393	chr3L	6042722	6042774	Doc	39	2380	14.0	18.0	16.0	2.3	2433	chr3L	6040341	intergenic	Jon65Aiv +	chr3L	6041558	intergenic	not near genes	chr3L	6042774	intergenic	not near genes	chr3L_39_6040001	chr3L_6040001	RAL-307_100b
2052	chr3L	6220889	6220902	chr3L	6230066	6230079	roo	9	9176	38.5	18.5	28.5	0.3	9190	chr3L	6220889	5` UTR	pncr008:3L +	chr3L	6225484	intergenic	not near genes	chr3L	6230079	intergenic	not near genes	chr3L_9_6225001	chr3L_6225001	RAL-307_100b
2053	chr3L	6220903	6220944	chr3L	6230065	6230115	roo	51	9175	14.5	18.0	16.2	3.0	9212	chr3L	6220903	5` UTR	pncr008:3L +	chr3L	6225509	intergenic	not near genes	chr3L	6230115	intergenic	not near genes	chr3L_51_6225001	chr3L_6225001	RAL-307_100b
2055	chr3L	6334983	6335038	chr3L	6335479	6335521	297	39	492	13.5	17.5	15.5	2.4	538	chr3L	6334983	intron	CG13300 -	chr3L	6335252	intron	CG13300 -	chr3L	6335521	intron	CG13300 -	chr3L_39_6335001	chr3L_6335001	RAL-307_100b
2057	chr3L	6405632	6405687	chr3L	6432121	6432176	roo	42	26486	13.5	16.0	14.8	2.7	26544	chr3L	6405632	intron	CG42747 +	chr3L	6418904	intron	CG42747 +	chr3L	6432176	intron	CG42747 +	chr3L_42_6415001	chr3L_6415001	RAL-307_100b
2062	chr3L	6620587	6620606	chr3L	6621052	6621055	Rt1c	22	463	14.5	41.0	27.8	0.8	468	chr3L	6620587	intergenic	not near genes	chr3L	6620821	intergenic	not near genes	chr3L	6621055	intergenic	not near genes	chr3L_22_6620001	chr3L_6620001	RAL-307_100b
2065	chr3L	6781099	6781148	chr3L	6783137	6783138	Doc	46	2035	15.0	16.0	15.5	2.8	2039	chr3L	6781099	intergenic	not near genes	chr3L	6782118	intergenic	not near genes	chr3L	6783138	intergenic	not near genes	chr3L_46_6780001	chr3L_6780001	RAL-307_100b
2067	chr3L	6855906	6855955	chr3L	6860716	6860765	Doc	34	4807	11.0	13.0	12.0	2.6	4859	chr3L	6855906	intergenic	not near genes	chr3L	6858336	intergenic	not near genes	chr3L	6860765	intergenic	not near genes	chr3L_34_6855001	chr3L_6855001	RAL-307_100b
2068	chr3L	6887494	6887551	chr3L	6895009	6895040	roo	38	7513	15.5	14.0	14.8	2.4	7546	chr3L	6887494	intergenic	not near genes	chr3L	6891267	intergenic	not near genes	chr3L	6895040	intergenic	not near genes	chr3L_38_6890001	chr3L_6890001	RAL-307_100b
2073	chr3L	6994891	6994902	chr3L	6995525	6995537	BS	10	634	2.0	10.0	6.0	1.4	646	chr3L	6994891	intergenic	bin +	chr3L	6995214	intergenic	not near genes	chr3L	6995537	intergenic	not near genes	chr3L_10_6995001	chr3L_6995001	RAL-307_100b
2074	chr3L	6994903	6994917	chr3L	6995523	6995536	BS	7	630	2.0	9.0	5.5	1.1	633	chr3L	6994903	intergenic	bin +	chr3L	6995220	intergenic	not near genes	chr3L	6995536	intergenic	not near genes	chr3L_7_6995001	chr3L_6995001	RAL-307_100b
2083	chr3L	7129937	7129982	chr3L	7130151	7130199	BS	37	215	9.0	10.0	9.5	3.5	262	chr3L	7129937	intergenic	CG15829 +	chr3L	7130068	intergenic	CG15829 +	chr3L	7130199	intergenic	not near genes	chr3L_37_7130001	chr3L_7130001	RAL-307_100b
2100	chr3L	7377292	7377346	chr3L	7380422	7380476	297	47	3128	14.0	17.5	15.8	2.8	3184	chr3L	7377292	intron	SMSr -	chr3L	7378884	intron	SMSr -	chr3L	7380476	intron	SMSr -	chr3L_47_7375001	chr3L_7375001	RAL-307_100b
2105	chr3L	7498740	7498747	chr3L	7503542	7503549	F-element	6	4802	31.0	19.5	25.2	0.2	4809	chr3L	7498740	5` UTR	CG8539 -	chr3L	7501144	intergenic	not near genes	chr3L	7503549	intergenic	not near genes	chr3L_6_7500001	chr3L_7500001	RAL-307_100b
2106	chr3L	7498750	7498784	chr3L	7503537	7503586	F-element	30	4798	19.0	15.5	17.2	1.6	4836	chr3L	7498750	5` UTR	CG8539 -	chr3L	7501168	intergenic	not near genes	chr3L	7503586	intergenic	not near genes	chr3L_30_7500001	chr3L_7500001	RAL-307_100b
2115	chr3L	7793694	7793698	chr3L	7800771	7800775	297	6	7077	46.5	19.5	33.0	0.2	7081	chr3L	7793694	intron	CG32369 -	chr3L	7797234	intron	CG32369 -	chr3L	7800775	intron	CG32369 -	chr3L_6_7795001	chr3L_7795001	RAL-307_100b
2116	chr3L	7793699	7793739	chr3L	7800768	7800816	297	46	7076	21.5	18.5	20.0	2.2	7117	chr3L	7793699	intron	CG32369 -	chr3L	7797258	intron	CG32369 -	chr3L	7800816	intron	CG32369 -	chr3L_46_7795001	chr3L_7795001	RAL-307_100b
2121	chr3L	7886517	7886520	chr3L	7889060	7889063	Stalker4	4	2542	3.5	22.5	13.0	0.3	2546	chr3L	7886517	intron	CG32365 +	chr3L	7887790	intron	CG32365 +	chr3L	7889063	intron	CG32365 +	chr3L_4_7885001	chr3L_7885001	RAL-307_100b
2122	chr3L	7886532	7886546	chr3L	7889038	7889090	Stalker4	13	2534	1.5	12.5	7.0	1.6	2558	chr3L	7886532	intron	CG32365 +	chr3L	7887811	intron	CG32365 +	chr3L	7889090	intron	CG32365 +	chr3L_13_7885001	chr3L_7885001	RAL-307_100b
2123	chr3L	7916808	7916859	chr3L	7926004	7926055	roo	34	9195	16.0	16.5	16.2	2.0	9247	chr3L	7916808	3` UTR	syd -	chr3L	7921432	intron	syd -	chr3L	7926055	3` UTR	syd -	chr3L_34_7920001	chr3L_7920001	RAL-307_100b
2126	chr3L	7985340	7985358	chr3L	7987693	7987711	NOF	9	2353	32.5	16.5	24.5	0.4	2371	chr3L	7985340	intron	nmo +	chr3L	7986526	intron	nmo +	chr3L	7987711	intron	nmo +	chr3L_9_7985001	chr3L_7985001	RAL-307_100b
2127	chr3L	7985360	7985398	chr3L	7987692	7987718	NOF	32	2348	18.5	15.0	16.8	1.8	2358	chr3L	7985360	intron	nmo +	chr3L	7986539	intron	nmo +	chr3L	7987718	intron	nmo +	chr3L_32_7985001	chr3L_7985001	RAL-307_100b
2129	chr3L	8019729	8019731	chr3L	8024122	8024152	NOF	5	4422	8.5	12.5	10.5	0.4	4423	chr3L	8019729	intron	nmo +	chr3L	8021940	intron	nmo +	chr3L	8024152	intron	nmo +	chr3L_5_8020001	chr3L_8020001	RAL-307_100b
2130	chr3L	8019732	8019736	chr3L	8024111	8024144	NOF	9	4423	5.5	9.0	7.2	1.1	4412	chr3L	8019732	intron	nmo +	chr3L	8021938	intron	nmo +	chr3L	8024144	intron	nmo +	chr3L_9_8020001	chr3L_8020001	RAL-307_100b
2139	chr3L	8233567	8233590	chr3L	8238854	8238869	Rt1a	24	5285	15.5	37.5	26.5	0.9	5302	chr3L	8233567	intron	CG7213 -	chr3L	8236218	intron	CG7213 -	chr3L	8238869	intron,intron	CG7213 -,Dscam4 +	chr3L_24_8235001	chr3L_8235001	RAL-307_100b
2151	chr3L	8481791	8481806	chr3L	8490954	8490982	roo	20	9174	15.5	22.5	19.0	1.0	9191	chr3L	8481791	intron	CG43163 -	chr3L	8486386	intron	CG43163 -	chr3L	8490982	intron	CG43163 -	chr3L_20_8485001	chr3L_8485001	RAL-307_100b
2152	chr3L	8498273	8498326	chr3L	8505765	8505803	blood	53	7490	14.0	20.0	17.0	2.9	7530	chr3L	8498273	intron	CG43163 -	chr3L	8502038	intron	CG43163 -	chr3L	8505803	intron	CG43163 -	chr3L_53_8500001	chr3L_8500001	RAL-307_100b
2155	chr3L	8791252	8791272	chr3L	8796697	8796705	I-element	20	5443	45.0	0.0	22.5	0.9	5453	chr3L	8791252	exon	Fhos +	chr3L	8793978	intron	Fhos +	chr3L	8796705	intron	Fhos +	chr3L_20_8790001	chr3L_8790001	RAL-307_100b
2156	chr3L	8791282	8791308	chr3L	8796692	8796752	I-element	13	5439	23.5	0.0	11.8	1.0	5470	chr3L	8791282	exon	Fhos +	chr3L	8794017	intron	Fhos +	chr3L	8796752	intron	Fhos +	chr3L_13_8790001	chr3L_8790001	RAL-307_100b
2165	chr3L	9076903	9076957	chr3L	9084488	9084502	412	45	7581	14.5	25.0	19.8	2.2	7599	chr3L	9076903	exon	Tequila +	chr3L	9080702	intron	Tequila +	chr3L	9084502	exon	Tequila +	chr3L_45_9080001	chr3L_9080001	RAL-307_100b
2168	chr3L	9130535	9130540	chr3L	9134318	9134321	412	5	3784	34.0	14.5	24.2	0.2	3786	chr3L	9130535	intergenic	bol -	chr3L	9132428	intergenic	not near genes	chr3L	9134321	intergenic	Dhpr +	chr3L_5_9130001	chr3L_9130001	RAL-307_100b
2169	chr3L	9130542	9130581	chr3L	9134317	9134362	412	38	3781	20.0	13.5	16.8	2.1	3820	chr3L	9130542	intergenic	bol -	chr3L	9132452	intergenic	not near genes	chr3L	9134362	intergenic	Dhpr +	chr3L_38_9130001	chr3L_9130001	RAL-307_100b
2171	chr3L	9164673	9164680	chr3L	9166165	9166172	hobo	11	1491	57.5	9.5	33.5	0.3	1499	chr3L	9164673	intron	Rdl -	chr3L	9165422	intron	Rdl -	chr3L	9166172	intron	Rdl -	chr3L_11_9165001	chr3L_9165001	RAL-307_100b
2172	chr3L	9164682	9164707	chr3L	9166163	9166199	hobo	47	1488	41.0	9.0	25.0	1.8	1517	chr3L	9164682	intron	Rdl -	chr3L	9165440	intron	Rdl -	chr3L	9166199	intron	Rdl -	chr3L_47_9165001	chr3L_9165001	RAL-307_100b
2173	chr3L	9164708	9164725	chr3L	9166162	9166185	hobo	10	1470	31.5	8.5	20.0	0.5	1477	chr3L	9164708	intron	Rdl -	chr3L	9165446	intron	Rdl -	chr3L	9166185	intron	Rdl -	chr3L_10_9165001	chr3L_9165001	RAL-307_100b
2174	chr3L	9219224	9219266	chr3L	9219916	9219963	jockey	51	693	30.0	20.0	25.0	2.0	739	chr3L	9219224	intergenic	not near genes	chr3L	9219594	intergenic	not near genes	chr3L	9219963	intergenic	not near genes	chr3L_51_9215001	chr3L_9215001	RAL-307_100b
2175	chr3L	9219268	9219275	chr3L	9219911	9219929	jockey	4	668	22.5	16.0	19.2	0.2	661	chr3L	9219268	intergenic	not near genes	chr3L	9219598	intergenic	not near genes	chr3L	9219929	intergenic	not near genes	chr3L_4_9215001	chr3L_9215001	RAL-307_100b
2178	chr3L	9270591	9270651	chr3L	9278371	9278402	roo	19	7772	11.0	13.0	12.0	1.5	7811	chr3L	9270591	intron	GluRIB +	chr3L	9274496	intron	GluRIB +	chr3L	9278402	exon	GluRIB +	chr3L_19_9270001	chr3L_9270001	RAL-307_100b
2185	chr3L	9392446	9392454	chr3L	9395291	9395297	Doc	6	2845	8.0	17.5	12.8	0.4	2851	chr3L	9392446	intron	CG4080 -	chr3L	9393872	intron	CG4080 -	chr3L	9395297	intron	CG4080 -	chr3L_6_9390001	chr3L_9390001	RAL-307_100b
2186	chr3L	9443492	9443518	chr3L	9445299	9445330	S-element	22	1811	18.5	15.0	16.8	1.2	1838	chr3L	9443492	intron	CG33926 +	chr3L	9444411	intron	CG33926 +	chr3L	9445330	intron	CG33926 +	chr3L_22_9440001	chr3L_9440001	RAL-307_100b
2187	chr3L	9443519	9443544	chr3L	9445298	9445356	S-element	25	1803	11.0	15.0	13.0	1.8	1837	chr3L	9443519	intron	CG33926 +	chr3L	9444438	intron	CG33926 +	chr3L	9445356	intron	CG33926 +	chr3L_25_9440001	chr3L_9440001	RAL-307_100b
2189	chr3L	9501677	9501731	chr3L	9502188	9502242	roo	43	507	8.0	18.0	13.0	3.1	565	chr3L	9501677	intron	path -	chr3L	9501960	intron	path -	chr3L	9502242	intron	path -	chr3L_43_9500001	chr3L_9500001	RAL-307_100b
2196	chr3L	9526468	9526512	chr3L	9528173	9528212	Doc	26	1704	9.0	16.0	12.5	1.9	1744	chr3L	9526468	intergenic	not near genes	chr3L	9527340	intergenic	not near genes	chr3L	9528212	intergenic	not near genes	chr3L_26_9525001	chr3L_9525001	RAL-307_100b
2197	chr3L	9533738	9533786	chr3L	9541312	9541366	412	23	7576	14.5	33.0	23.8	0.9	7628	chr3L	9533738	intergenic	not near genes	chr3L	9537552	intergenic	not near genes	chr3L	9541366	intergenic	not near genes	chr3L_23_9535001	chr3L_9535001	RAL-307_100b
2198	chr3L	9571877	9571887	chr3L	9572250	9572260	jockey	5	373	27.5	1.5	14.5	0.3	383	chr3L	9571877	intron	CG42673 +	chr3L	9572068	intron	CG42673 +	chr3L	9572260	intron	CG42673 +	chr3L_5_9570001	chr3L_9570001	RAL-307_100b
2199	chr3L	9571889	9571938	chr3L	9572247	9572273	jockey	17	363	9.0	1.5	5.2	2.7	384	chr3L	9571889	intron	CG42673 +	chr3L	9572081	intron	CG42673 +	chr3L	9572273	intron	CG42673 +	chr3L_17_9570001	chr3L_9570001	RAL-307_100b
2200	chr3L	9575882	9575948	chr3L	9580985	9581006	jockey	51	5097	11.5	13.0	12.2	3.9	5124	chr3L	9575882	intron	CG42673 +	chr3L	9578444	intron	CG42673 +	chr3L	9581006	intron	CG42673 +	chr3L_51_9575001	chr3L_9575001	RAL-307_100b
2214	chr3L	9929648	9929700	chr3L	9938453	9938505	roo	43	8802	16.0	18.0	17.0	2.4	8857	chr3L	9929648	intron	CG34356 +	chr3L	9934076	intron	CG34356 +	chr3L	9938505	intron	CG34356 +	chr3L_43_9930001	chr3L_9930001	RAL-307_100b
2240	chr3L	10414928	10414935	chr3L	10417325	10417332	Doc	6	2396	29.0	21.0	25.0	0.2	2404	chr3L	10414928	intergenic	CG12362 +	chr3L	10416130	intergenic	not near genes	chr3L	10417332	intergenic	not near genes	chr3L_6_10415001	chr3L_10415001	RAL-307_100b
2241	chr3L	10414936	10414970	chr3L	10417323	10417363	Doc	38	2393	12.5	18.0	15.2	2.3	2427	chr3L	10414936	intergenic	CG12362 +	chr3L	10416150	intergenic	not near genes	chr3L	10417363	intergenic	not near genes	chr3L_38_10415001	chr3L_10415001	RAL-307_100b
2242	chr3L	10414971	10414976	chr3L	10417312	10417314	Doc	6	2374	8.5	14.0	11.2	0.5	2343	chr3L	10414971	intergenic	CG12362 +	chr3L	10416142	intergenic	not near genes	chr3L	10417314	intergenic	not near genes	chr3L_6_10415001	chr3L_10415001	RAL-307_100b
2267	chr3L	11087038	11087090	chr3L	11088851	11088904	S-element	54	1809	18.5	14.0	16.2	3.1	1866	chr3L	11087038	intron	JIL-1 -	chr3L	11087971	intron	JIL-1 -	chr3L	11088904	intron	JIL-1 -	chr3L_54_11085001	chr3L_11085001	RAL-307_100b
2268	chr3L	11105268	11105297	chr3L	11107004	11107032	X-element	30	1735	22.0	15.5	18.8	1.5	1764	chr3L	11105268	intergenic	not near genes	chr3L	11106150	intergenic	not near genes	chr3L	11107032	exon	CG32073 -	chr3L_30_11105001	chr3L_11105001	RAL-307_100b
2269	chr3L	11105300	11105328	chr3L	11107001	11107048	X-element	29	1728	14.0	13.5	13.8	2.0	1748	chr3L	11105300	intergenic	not near genes	chr3L	11106174	intergenic	not near genes	chr3L	11107048	exon	CG32073 -	chr3L_29_11105001	chr3L_11105001	RAL-307_100b
2276	chr3L	11264441	11264493	chr3L	11271418	11271470	17.6	37	6973	21.0	9.5	15.2	2.3	7029	chr3L	11264441	intergenic	not near genes	chr3L	11267956	intergenic	not near genes	chr3L	11271470	intergenic	not near genes	chr3L_37_11265001	chr3L_11265001	RAL-307_100b
2277	chr3L	11329669	11329673	chr3L	11332899	11332903	jockey	4	3230	33.0	16.0	24.5	0.2	3234	chr3L	11329669	intergenic	not near genes	chr3L	11331286	intergenic	not near genes	chr3L	11332903	intergenic	not near genes	chr3L_4_11330001	chr3L_11330001	RAL-307_100b
2278	chr3L	11329674	11329689	chr3L	11332897	11332919	jockey	8	3228	28.5	15.5	22.0	0.3	3245	chr3L	11329674	intergenic	not near genes	chr3L	11331296	intergenic	not near genes	chr3L	11332919	intergenic	not near genes	chr3L_8_11330001	chr3L_11330001	RAL-307_100b
2279	chr3L	11329691	11329726	chr3L	11332893	11332941	jockey	26	3224	12.0	14.0	13.0	1.9	3250	chr3L	11329691	intergenic	not near genes	chr3L	11331316	intergenic	not near genes	chr3L	11332941	intergenic	not near genes	chr3L_26_11330001	chr3L_11330001	RAL-307_100b
2282	chr3L	11499039	11499046	chr3L	11508223	11508227	roo	5	9183	16.5	0.0	8.2	0.5	9188	chr3L	11499039	3` UTR	chrb +	chr3L	11503633	intergenic	not near genes	chr3L	11508227	intergenic	CG33500 +	chr3L_5_11500001	chr3L_11500001	RAL-307_100b
2283	chr3L	11564791	11564795	chr3L	11572430	11572440	412	4	7645	17.0	32.0	24.5	0.2	7649	chr3L	11564791	exon	CG33267 +	chr3L	11568616	intron	CG33267 +	chr3L	11572440	exon	CG33267 +	chr3L_4_11565001	chr3L_11565001	RAL-307_100b
2284	chr3L	11564803	11564805	chr3L	11572407	11572441	412	4	7626	12.0	18.0	15.0	0.2	7638	chr3L	11564803	exon	CG33267 +	chr3L	11568622	intron	CG33267 +	chr3L	11572441	exon	CG33267 +	chr3L_4_11565001	chr3L_11565001	RAL-307_100b
2291	chr3L	11723065	11723111	chr3L	11727885	11727930	Doc	47	4817	17.0	20.0	18.5	2.4	4865	chr3L	11723065	3` UTR	Bmcp +	chr3L	11725498	intron	Bmcp +	chr3L	11727930	3` UTR	Bmcp +	chr3L_47_11725001	chr3L_11725001	RAL-307_100b
2304	chr3L	11864528	11864553	chr3L	11865848	11865873	pogo	20	1320	36.0	20.5	28.2	0.7	1345	chr3L	11864528	intron	CG44837 -	chr3L	11865200	intron	CG44837 -	chr3L	11865873	intron	CG44837 -	chr3L_20_11865001	chr3L_11865001	RAL-307_100b
2305	chr3L	11864554	11864585	chr3L	11865847	11865905	pogo	27	1312	18.5	19.5	19.0	1.4	1351	chr3L	11864554	intron	CG44837 -	chr3L	11865230	intron	CG44837 -	chr3L	11865905	intron	CG44837 -	chr3L_27_11865001	chr3L_11865001	RAL-307_100b
2344	chr3L	12874899	12874955	chr3L	12877216	12877272	jockey	56	2316	14.0	18.5	16.2	3.3	2373	chr3L	12874899	intergenic	not near genes	chr3L	12876086	intergenic	not near genes	chr3L	12877272	intergenic	not near genes	chr3L_56_12875001	chr3L_12875001	RAL-307_100b
2349	chr3L	12919254	12919260	chr3L	12924763	12924769	Rt1c	10	5508	41.5	14.5	28.0	0.3	5515	chr3L	12919254	intergenic	not near genes	chr3L	12922012	intergenic	not near genes	chr3L	12924769	intergenic	not near genes	chr3L_10_12920001	chr3L_12920001	RAL-307_100b
2350	chr3L	12919261	12919269	chr3L	12924760	12924777	Rt1c	18	5504	37.5	11.0	24.2	0.7	5516	chr3L	12919261	intergenic	not near genes	chr3L	12922019	intergenic	not near genes	chr3L	12924777	intergenic	not near genes	chr3L_18_12920001	chr3L_12920001	RAL-307_100b
2353	chr3L	12957772	12957805	chr3L	12962268	12962312	copia	27	4504	17.0	19.0	18.0	1.4	4540	chr3L	12957772	intergenic	not near genes	chr3L	12960042	intergenic	not near genes	chr3L	12962312	intergenic	not near genes	chr3L_27_12960001	chr3L_12960001	RAL-307_100b
2354	chr3L	12957806	12957817	chr3L	12962267	12962307	copia	17	4499	11.0	18.5	14.8	1.1	4501	chr3L	12957806	intergenic	not near genes	chr3L	12960056	intergenic	not near genes	chr3L	12962307	intergenic	not near genes	chr3L_17_12960001	chr3L_12960001	RAL-307_100b
2377	chr3L	13525135	13525144	chr3L	13532956	13532965	roo	7	7821	38.5	18.5	28.5	0.2	7830	chr3L	13525135	intergenic	not near genes	chr3L	13529050	intergenic	not near genes	chr3L	13532965	intergenic	not near genes	chr3L_7_13525001	chr3L_13525001	RAL-307_100b
2378	chr3L	13525145	13525185	chr3L	13532955	13533006	roo	35	7819	18.5	18.5	18.5	1.8	7861	chr3L	13525145	intergenic	not near genes	chr3L	13529076	intergenic	not near genes	chr3L	13533006	intergenic	not near genes	chr3L_35_13525001	chr3L_13525001	RAL-307_100b
2382	chr3L	13574611	13574618	chr3L	13580134	13580149	Rt1c	8	5533	34.5	19.0	26.8	0.3	5538	chr3L	13574611	intron	bru-3 -	chr3L	13577380	intron	bru-3 -	chr3L	13580149	intron	bru-3 -	chr3L_8_13575001	chr3L_13575001	RAL-307_100b
2389	chr3L	13804519	13804573	chr3L	13822830	13822884	roo	47	18310	11.0	10.5	10.8	4.0	18365	chr3L	13804519	intergenic	not near genes	chr3L	13813702	intergenic	not near genes	chr3L	13822884	intergenic	not near genes	chr3L_47_13810001	chr3L_13810001	RAL-307_100b
2410	chr3L	14245558	14245594	chr3L	14245660	14245703	1360	29	114	16.0	11.0	13.5	2.0	145	chr3L	14245558	3` UTR	CR44561 -	chr3L	14245630	3` UTR	CR44561 -	chr3L	14245703	intergenic	CR44561 -,CR44560 +	chr3L_29_14245001	chr3L_14245001	RAL-307_100b
2411	chr3L	14267391	14267405	chr3L	14271821	14271835	F-element	10	4433	15.0	0.0	7.5	1.2	4444	chr3L	14267391	intergenic	not near genes	chr3L	14269613	intergenic	not near genes	chr3L	14271835	intergenic	not near genes	chr3L_10_14265001	chr3L_14265001	RAL-307_100b
2412	chr3L	14295956	14296011	chr3L	14296467	14296481	roo	43	502	15.5	20.0	17.8	2.3	525	chr3L	14295956	intron	fz +	chr3L	14296218	intron	fz +	chr3L	14296481	intron	fz +	chr3L_43_14295001	chr3L_14295001	RAL-307_100b
2413	chr3L	14312008	14312024	chr3L	14316836	14316843	X-element	12	4829	24.5	17.0	20.8	0.6	4835	chr3L	14312008	exon	fz +	chr3L	14314426	intron	fz +	chr3L	14316843	intron	fz +	chr3L_12_14310001	chr3L_14310001	RAL-307_100b
2414	chr3L	14312025	14312055	chr3L	14316833	14316885	X-element	23	4821	14.5	16.0	15.2	1.4	4860	chr3L	14312025	exon	fz +	chr3L	14314455	intron	fz +	chr3L	14316885	intron	fz +	chr3L_23_14310001	chr3L_14310001	RAL-307_100b
2422	chr3L	14468429	14468475	chr3L	14473655	14473701	copia	38	5229	16.0	12.0	14.0	2.5	5272	chr3L	14468429	intron	bbg -	chr3L	14471065	intron	bbg -	chr3L	14473701	intron	bbg -	chr3L_38_14470001	chr3L_14470001	RAL-307_100b
2431	chr3L	14721160	14721209	chr3L	14723028	14723066	Rt1c	36	1861	20.0	14.0	17.0	2.0	1906	chr3L	14721160	intron	ome +	chr3L	14722113	intron	ome +	chr3L	14723066	intron	ome +	chr3L_36_14720001	chr3L_14720001	RAL-307_100b
2432	chr3L	14725587	14725618	chr3L	14728606	14728637	Doc	16	3019	12.0	20.5	16.2	0.9	3050	chr3L	14725587	intron	ome +	chr3L	14727112	intron	ome +	chr3L	14728637	intron	ome +	chr3L_16_14725001	chr3L_14725001	RAL-307_100b
2433	chr3L	14825138	14825159	chr3L	14832890	14832911	Stalker2	10	7752	3.5	14.0	8.8	1.0	7773	chr3L	14825138	intron	CG17839 +	chr3L	14829024	intron	CG17839 +	chr3L	14832911	intron	CG17839 +	chr3L_10_14825001	chr3L_14825001	RAL-307_100b
2435	chr3L	14970738	14970764	chr3L	14971074	14971100	F-element	12	334	8.0	6.5	7.2	1.5	362	chr3L	14970738	intergenic	Tom +	chr3L	14970919	intergenic	not near genes	chr3L	14971100	intergenic	not near genes	chr3L_12_14970001	chr3L_14970001	RAL-307_100b
2441	chr3L	15085024	15085082	chr3L	15086215	15086273	1360	35	1186	12.0	12.5	12.2	2.7	1249	chr3L	15085024	intron	cp309 -	chr3L	15085648	intron	cp309 -	chr3L	15086273	intron	cp309 -	chr3L_35_15085001	chr3L_15085001	RAL-307_100b
2448	chr3L	15295747	15295797	chr3L	15298615	15298665	gypsy5	35	2867	18.0	20.5	19.2	1.7	2918	chr3L	15295747	intergenic	not near genes	chr3L	15297206	intergenic	not near genes	chr3L	15298665	intergenic	Best4 +	chr3L_35_15295001	chr3L_15295001	RAL-307_100b
2454	chr3L	15423739	15423783	chr3L	15426608	15426649	opus	27	2866	15.5	7.0	11.2	2.2	2910	chr3L	15423739	intergenic	not near genes	chr3L	15425194	intergenic	not near genes	chr3L	15426649	intergenic	not near genes	chr3L_27_15425001	chr3L_15425001	RAL-307_100b
2475	chr3L	15899214	15899220	chr3L	15899794	15899812	jockey	4	586	30.0	17.0	23.5	0.2	598	chr3L	15899214	intergenic	pHCl -	chr3L	15899513	intergenic	pHCl -	chr3L	15899812	intergenic	sff -	chr3L_4_15895001	chr3L_15895001	RAL-307_100b
2476	chr3L	15899223	15899263	chr3L	15899791	15899817	jockey	30	574	9.0	16.0	12.5	2.2	594	chr3L	15899223	intergenic	pHCl -	chr3L	15899520	intergenic	pHCl -	chr3L	15899817	intergenic	sff -	chr3L_30_15895001	chr3L_15895001	RAL-307_100b
2477	chr3L	15929174	15929226	chr3L	15938342	15938398	roo	7	9167	0.0	14.5	7.2	0.9	9224	chr3L	15929174	intron	Pka-C3 -	chr3L	15933786	intron	Pka-C3 -	chr3L	15938398	intron	Pka-C3 -	chr3L_7_15930001	chr3L_15930001	RAL-307_100b
2482	chr3L	16184084	16184091	chr3L	16188928	16188935	X-element	4	4844	33.0	18.5	25.8	0.1	4851	chr3L	16184084	intergenic	not near genes	chr3L	16186510	intergenic	not near genes	chr3L	16188935	intergenic	not near genes	chr3L_4_16185001	chr3L_16185001	RAL-307_100b
2483	chr3L	16184093	16184110	chr3L	16188925	16188954	X-element	13	4840	24.0	16.0	20.0	0.6	4861	chr3L	16184093	intergenic	not near genes	chr3L	16186524	intergenic	not near genes	chr3L	16188954	intergenic	not near genes	chr3L_13_16185001	chr3L_16185001	RAL-307_100b
2484	chr3L	16184111	16184136	chr3L	16188924	16188980	X-element	22	4841	13.5	16.0	14.8	1.4	4869	chr3L	16184111	intergenic	not near genes	chr3L	16186546	intergenic	not near genes	chr3L	16188980	intergenic	not near genes	chr3L_22_16185001	chr3L_16185001	RAL-307_100b
2488	chr3L	16443822	16443879	chr3L	16446187	16446244	Doc	70	2362	16.0	22.5	19.2	3.5	2422	chr3L	16443822	intron,intron	CG33158 +,dsx-c73A -	chr3L	16445033	intron,intron	CG33158 +,dsx-c73A -	chr3L	16446244	intron,intron	CG33158 +,dsx-c73A -	chr3L_70_16445001	chr3L_16445001	RAL-307_100b
2492	chr3L	16493951	16494012	chr3L	16494493	16494533	jockey	65	538	17.0	19.0	18.0	3.4	582	chr3L	16493951	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494242	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494533	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L_65_16490001	chr3L_16490001	RAL-307_100b
2501	chr3L	16616487	16616539	chr3L	16621840	16621892	297	47	5347	17.0	11.5	14.2	3.1	5405	chr3L	16616487	3` UTR	Abl -	chr3L	16619190	3` UTR	Abl -	chr3L	16621892	3` UTR	Abl -	chr3L_47_16615001	chr3L_16615001	RAL-307_100b
2504	chr3L	16683998	16684043	chr3L	16689244	16689289	copia	27	5245	6.0	12.5	9.2	2.6	5291	chr3L	16683998	intron,intron	Lasp -,CG43954 -	chr3L	16686644	intron,intron	Lasp -,CG43954 -	chr3L	16689289	intron,intron,5` UTR	Lasp -,CG43954 -,CR45179 +	chr3L_27_16685001	chr3L_16685001	RAL-307_100b
2520	chr3L	16945705	16945761	chr3L	16954883	16954901	roo	54	9169	18.5	19.5	19.0	2.7	9196	chr3L	16945705	exon	Obp73a +	chr3L	16950303	intergenic	not near genes	chr3L	16954901	5` UTR	Nc73EF +	chr3L_54_16950001	chr3L_16950001	RAL-307_100b
2524	chr3L	17034913	17034967	chr3L	17035126	17035170	G2	34	210	9.5	15.0	12.2	2.6	257	chr3L	17034913	intergenic	not near genes	chr3L	17035042	intergenic	not near genes	chr3L	17035170	intergenic	beg +	chr3L_34_17035001	chr3L_17035001	RAL-307_100b
2525	chr3L	17084982	17085034	chr3L	17094156	17094208	roo	38	9173	14.0	25.0	19.5	1.9	9226	chr3L	17084982	intron	Rbp6 -	chr3L	17089595	intron	Rbp6 -	chr3L	17094208	intron	Rbp6 -	chr3L_38_17085001	chr3L_17085001	RAL-307_100b
2537	chr3L	17516953	17517011	chr3L	17524536	17524558	412	47	7577	15.0	14.5	14.8	3.0	7605	chr3L	17516953	intron	CG7564 +	chr3L	17520756	intron	CG7564 +	chr3L	17524558	3` UTR	CG7564 +	chr3L_47_17520001	chr3L_17520001	RAL-307_100b
2543	chr3L	17730828	17730843	chr3L	17738183	17738198	mdg1	17	7355	25.5	14.5	20.0	0.8	7370	chr3L	17730828	intron	Ccn +	chr3L	17734513	intron	Ccn +	chr3L	17738198	intron	Ccn +	chr3L_17_17730001	chr3L_17730001	RAL-307_100b
2544	chr3L	17730844	17730879	chr3L	17738180	17738227	mdg1	27	7350	10.5	14.5	12.5	2.0	7383	chr3L	17730844	intron	Ccn +	chr3L	17734536	intron	Ccn +	chr3L	17738227	intron	Ccn +	chr3L_27_17730001	chr3L_17730001	RAL-307_100b
2550	chr3L	17799790	17799842	chr3L	17801601	17801644	S-element	43	1810	10.0	18.0	14.0	2.9	1854	chr3L	17799790	intron	NUCB1 -	chr3L	17800717	intron	NUCB1 -	chr3L	17801644	intron	NUCB1 -	chr3L_43_17800001	chr3L_17800001	RAL-307_100b
2552	chr3L	17918363	17918404	chr3L	17921174	17921226	opus	19	2824	10.5	10.0	10.2	1.7	2863	chr3L	17918363	intergenic	not near genes	chr3L	17919794	intergenic	not near genes	chr3L	17921226	intergenic	not near genes	chr3L_19_17915001	chr3L_17915001	RAL-307_100b
2560	chr3L	18047687	18047737	chr3L	18056767	18056819	roo	34	9081	15.0	16.5	15.8	2.0	9132	chr3L	18047687	intron	Eip75B -	chr3L	18052253	intron	Eip75B -	chr3L	18056819	intron	Eip75B -	chr3L_34_18050001	chr3L_18050001	RAL-307_100b
2595	chr3L	18506111	18506160	chr3L	18509599	18509648	F-element	36	3487	16.5	15.5	16.0	2.1	3537	chr3L	18506111	intergenic	not near genes	chr3L	18507880	intergenic	not near genes	chr3L	18509648	intergenic	not near genes	chr3L_36_18505001	chr3L_18505001	RAL-307_100b
2597	chr3L	18514884	18514902	chr3L	18520100	18520118	BS	22	5214	31.5	17.0	24.2	0.9	5234	chr3L	18514884	intergenic	not near genes	chr3L	18517501	intergenic	not near genes	chr3L	18520118	intergenic	not near genes	chr3L_22_18515001	chr3L_18515001	RAL-307_100b
2598	chr3L	18514904	18514942	chr3L	18520095	18520117	BS	26	5210	12.0	14.0	13.0	1.9	5213	chr3L	18514904	intergenic	not near genes	chr3L	18517510	intergenic	not near genes	chr3L	18520117	intergenic	not near genes	chr3L_26_18515001	chr3L_18515001	RAL-307_100b
2600	chr3L	18528607	18528617	chr3L	18537793	18537803	roo	7	9186	26.5	12.5	19.5	0.3	9196	chr3L	18528607	intergenic	not near genes	chr3L	18533205	intergenic	not near genes	chr3L	18537803	intergenic	not near genes	chr3L_7_18530001	chr3L_18530001	RAL-307_100b
2601	chr3L	18528619	18528657	chr3L	18537792	18537843	roo	32	9184	12.5	12.5	12.5	2.4	9224	chr3L	18528619	intergenic	not near genes	chr3L	18533231	intergenic	not near genes	chr3L	18537843	intergenic	not near genes	chr3L_32_18530001	chr3L_18530001	RAL-307_100b
2605	chr3L	18593924	18593982	chr3L	18595929	18595946	Doc	36	2001	9.5	7.5	8.5	3.8	2022	chr3L	18593924	intergenic	term -	chr3L	18594935	intergenic	not near genes	chr3L	18595946	intergenic	CR45389 +	chr3L_36_18590001	chr3L_18590001	RAL-307_100b
2612	chr3L	18710737	18710790	chr3L	18718714	18718762	Stalker2	49	7975	17.5	14.0	15.8	2.9	8025	chr3L	18710737	intergenic	not near genes	chr3L	18714750	intergenic	not near genes	chr3L	18718762	intergenic	not near genes	chr3L_49_18710001	chr3L_18710001	RAL-307_100b
2616	chr3L	18772387	18772438	chr3L	18781093	18781144	roo	45	8704	18.0	15.0	16.5	2.6	8757	chr3L	18772387	intron	ftz-f1 -	chr3L	18776766	intron	ftz-f1 -	chr3L	18781144	intron	ftz-f1 -	chr3L_45_18775001	chr3L_18775001	RAL-307_100b
2618	chr3L	18784721	18784725	chr3L	18784842	18784848	INE-1	4	122	30.5	6.5	18.5	0.2	127	chr3L	18784721	intron	ftz-f1 -	chr3L	18784784	intron	ftz-f1 -	chr3L	18784848	intron	ftz-f1 -	chr3L_4_18780001	chr3L_18780001	RAL-307_100b
2621	chr3L	18833758	18833811	chr3L	18834947	18834974	1360	50	1186	16.5	13.0	14.8	3.2	1216	chr3L	18833758	intron	Indy -	chr3L	18834366	intron	Indy -	chr3L	18834974	intron	Indy -	chr3L_50_18830001	chr3L_18830001	RAL-307_100b
2630	chr3L	19008826	19008869	chr3L	19009189	19009232	jockey	42	360	9.5	18.5	14.0	2.8	406	chr3L	19008826	intron	nkd -	chr3L	19009029	intron	nkd -	chr3L	19009232	intron	nkd -	chr3L_42_19005001	chr3L_19005001	RAL-307_100b
2633	chr3L	19115616	19115622	chr3L	19115816	19115827	BS	6	203	33.5	15.0	24.2	0.2	211	chr3L	19115616	intron	CG14082 -	chr3L	19115722	intron	CG14082 -	chr3L	19115827	intron	CG14082 -	chr3L_6_19115001	chr3L_19115001	RAL-307_100b
2634	chr3L	19115625	19115668	chr3L	19115814	19115873	BS	33	199	16.5	12.5	14.5	2.1	248	chr3L	19115625	intron	CG14082 -	chr3L	19115749	intron	CG14082 -	chr3L	19115873	intron	CG14082 -	chr3L_33_19115001	chr3L_19115001	RAL-307_100b
2635	chr3L	19117015	19117076	chr3L	19124487	19124548	mdg1	59	7469	17.0	15.0	16.0	3.5	7533	chr3L	19117015	intron	CG14082 -	chr3L	19120782	intron	CG14082 -	chr3L	19124548	intron	CG14082 -	chr3L_59_19120001	chr3L_19120001	RAL-307_100b
2637	chr3L	19208036	19208065	chr3L	19209435	19209464	Doc	27	1397	31.0	17.0	24.0	1.1	1428	chr3L	19208036	intron	fz2 -	chr3L	19208750	intron	fz2 -	chr3L	19209464	intron	fz2 -	chr3L_27_19205001	chr3L_19205001	RAL-307_100b
2638	chr3L	19208069	19208091	chr3L	19209430	19209475	Doc	16	1390	16.0	15.0	15.5	1.0	1406	chr3L	19208069	intron	fz2 -	chr3L	19208772	intron	fz2 -	chr3L	19209475	intron	fz2 -	chr3L_16_19205001	chr3L_19205001	RAL-307_100b
2650	chr3L	19398915	19398921	chr3L	19403657	19403663	F-element	6	4741	18.5	21.5	20.0	0.3	4748	chr3L	19398915	intron	CG32206 -	chr3L	19401289	intron	CG32206 -	chr3L	19403663	intron	CG32206 -	chr3L_6_19400001	chr3L_19400001	RAL-307_100b
2651	chr3L	19398924	19398932	chr3L	19403656	19403669	F-element	9	4736	12.5	21.5	17.0	0.5	4745	chr3L	19398924	intron	CG32206 -	chr3L	19401296	intron	CG32206 -	chr3L	19403669	intron	CG32206 -	chr3L_9_19400001	chr3L_19400001	RAL-307_100b
2661	chr3L	19820273	19820311	chr3L	19827847	19827882	412	33	7572	10.5	13.0	11.8	2.6	7609	chr3L	19820273	intron	Deaf1 +	chr3L	19824078	intron	Deaf1 +	chr3L	19827882	intron	Deaf1 +	chr3L_33_19820001	chr3L_19820001	RAL-307_100b
2664	chr3L	19848489	19848503	chr3L	19857698	19857718	roo	14	9214	32.0	12.0	22.0	0.6	9229	chr3L	19848489	intron	Papss +	chr3L	19853104	intron	Papss +	chr3L	19857718	intron	Papss +	chr3L_14_19850001	chr3L_19850001	RAL-307_100b
2665	chr3L	19848504	19848509	chr3L	19857697	19857724	roo	9	9213	29.0	11.0	20.0	0.4	9220	chr3L	19848504	intron	Papss +	chr3L	19853114	intron	Papss +	chr3L	19857724	intron	Papss +	chr3L_9_19850001	chr3L_19850001	RAL-307_100b
2666	chr3L	19848510	19848528	chr3L	19857694	19857743	roo	20	9208	19.5	11.0	15.2	1.2	9233	chr3L	19848510	intron	Papss +	chr3L	19853126	intron	Papss +	chr3L	19857743	intron	Papss +	chr3L_20_19850001	chr3L_19850001	RAL-307_100b
2667	chr3L	19861800	19861803	chr3L	19863613	19863616	S-element	4	1813	32.5	14.5	23.5	0.2	1816	chr3L	19861800	5` UTR	CR45433 +	chr3L	19862708	intergenic	not near genes	chr3L	19863616	intergenic	not near genes	chr3L_4_19860001	chr3L_19860001	RAL-307_100b
2668	chr3L	19861804	19861850	chr3L	19863609	19863663	S-element	33	1812	13.5	12.0	12.8	2.4	1859	chr3L	19861804	5` UTR	CR45433 +	chr3L	19862734	intergenic	not near genes	chr3L	19863663	intergenic	not near genes	chr3L_33_19860001	chr3L_19860001	RAL-307_100b
2671	chr3L	20002958	20002983	chr3L	22753756	22753756	McClintock	4	2750785	27.0	66.5	46.8	0.1	2750798	chr3L	20002958	exon	CG7668 +	chr3L	21378357	intergenic	not near genes	chr3L	22753756	intron	SPoCk +	chr3L_4_21375001	chr3L_21375001	RAL-307_100b
2676	chr3L	20113636	20113687	chr3L	20122918	20122962	roo	41	9282	14.0	16.5	15.2	2.5	9326	chr3L	20113636	intergenic	not near genes	chr3L	20118299	intergenic	not near genes	chr3L	20122962	intergenic	not near genes	chr3L_41_20115001	chr3L_20115001	RAL-307_100b
2683	chr3L	20257308	20257363	chr3L	20258453	20258507	pogo	50	1142	12.5	17.0	14.8	3.2	1199	chr3L	20257308	intron	rdgC +	chr3L	20257908	intron	rdgC +	chr3L	20258507	intron	rdgC +	chr3L_50_20255001	chr3L_20255001	RAL-307_100b
2686	chr3L	20321119	20321125	chr3L	20342900	20342906	17.6	7	21781	36.5	135.0	85.8	0.1	21787	chr3L	20321119	exon	Spn77Bb +	chr3L	20332012	intergenic	not near genes	chr3L	20342906	exon	Spn77Bc +	chr3L_7_20330001	chr3L_20330001	RAL-307_100b
2693	chr3L	20476733	20476783	chr3L	20484357	20484407	springer	41	7621	14.0	20.0	17.0	2.3	7674	chr3L	20476733	3` UTR	isoQC +	chr3L	20480570	intergenic	not near genes	chr3L	20484407	3` UTR	ZnT77C -	chr3L_41_20480001	chr3L_20480001	RAL-307_100b
2695	chr3L	20590045	20590095	chr3L	20590604	20590629	412	49	558	15.0	14.5	14.8	3.1	584	chr3L	20590045	intergenic	not near genes	chr3L	20590337	intergenic	not near genes	chr3L	20590629	intergenic	not near genes	chr3L_49_20590001	chr3L_20590001	RAL-307_100b
2700	chr3L	20821260	20821311	chr3L	20824896	20824947	NOF	45	3634	16.0	12.5	14.2	3.0	3687	chr3L	20821260	intron	Pka-R1 +	chr3L	20823104	intron	Pka-R1 +	chr3L	20824947	intron	Pka-R1 +	chr3L_45_20820001	chr3L_20820001	RAL-307_100b
2706	chr3L	21014895	21014897	chr3L	21023396	21023403	Tirant	4	8504	42.5	12.0	27.2	0.1	8508	chr3L	21014895	intron	skd -	chr3L	21019149	intron	skd -	chr3L	21023403	intron	skd -	chr3L_4_21015001	chr3L_21015001	RAL-307_100b
2707	chr3L	21014898	21014948	chr3L	21023394	21023444	Tirant	45	8496	12.5	9.5	11.0	3.8	8546	chr3L	21014898	intron	skd -	chr3L	21019171	intron	skd -	chr3L	21023444	intron	skd -	chr3L_45_21015001	chr3L_21015001	RAL-307_100b
2711	chr3L	21151840	21151895	chr3L	21156949	21157004	flea	45	5108	15.5	15.5	15.5	2.7	5164	chr3L	21151840	intron	Ac78C -	chr3L	21154422	intron	Ac78C -	chr3L	21157004	intron	Ac78C -	chr3L_45_21150001	chr3L_21150001	RAL-307_100b
2712	chr3L	21243723	21243740	chr3L	21251311	21251318	412	8	7584	30.0	18.5	24.2	0.3	7595	chr3L	21243723	intron	Eip78C +	chr3L	21247520	intron	Eip78C +	chr3L	21251318	intron	Eip78C +	chr3L_8_21245001	chr3L_21245001	RAL-307_100b
2713	chr3L	21243742	21243772	chr3L	21251310	21251316	412	15	7572	11.0	17.5	14.2	1.0	7574	chr3L	21243742	intron	Eip78C +	chr3L	21247529	intron	Eip78C +	chr3L	21251316	intron	Eip78C +	chr3L_15_21245001	chr3L_21245001	RAL-307_100b
2716	chr3L	21306124	21306164	chr3L	21315308	21315348	roo	39	9183	20.0	12.5	16.2	2.3	9224	chr3L	21306124	3` UTR	CG7632 +	chr3L	21310736	intron	Pc -	chr3L	21315348	3` UTR	Pc -	chr3L_39_21310001	chr3L_21310001	RAL-307_100b
2717	chr3L	21306165	21306177	chr3L	21315306	21315355	roo	16	9179	14.5	12.0	13.2	1.1	9190	chr3L	21306165	3` UTR,3` UTR	CG7632 +,Pc -	chr3L	21310760	intron	Pc -	chr3L	21315355	3` UTR	Pc -	chr3L_16_21310001	chr3L_21310001	RAL-307_100b
2719	chr3L	21372697	21372753	chr3L	21379230	21379285	McClintock	18	6531	10.5	7.0	8.8	1.8	6588	chr3L	21372697	intergenic	not near genes	chr3L	21375991	intergenic	not near genes	chr3L	21379285	intergenic	not near genes	chr3L_18_21375001	chr3L_21375001	RAL-307_100b
2724	chr3L	21498825	21498833	chr3L	21500478	21500494	1360	16	1658	37.0	20.0	28.5	0.5	1669	chr3L	21498825	5` UTR,intron	CR43933 +,Glg1 -	chr3L	21499660	intron	Glg1 -	chr3L	21500494	intron	Glg1 -	chr3L_16_21495001	chr3L_21495001	RAL-307_100b
2725	chr3L	21498834	21498851	chr3L	21500471	21500497	1360	18	1655	25.0	18.0	21.5	0.8	1663	chr3L	21498834	intron	Glg1 -	chr3L	21499666	intron	Glg1 -	chr3L	21500497	intron	Glg1 -	chr3L_18_21495001	chr3L_21495001	RAL-307_100b
2726	chr3L	21498854	21498870	chr3L	21500468	21500496	1360	14	1644	13.5	16.5	15.0	0.9	1642	chr3L	21498854	intron	Glg1 -	chr3L	21499675	intron	Glg1 -	chr3L	21500496	intron	Glg1 -	chr3L_14_21495001	chr3L_21495001	RAL-307_100b
2727	chr3L	21749293	21749307	chr3L	21754478	21754492	Doc	5	5185	35.5	11.5	23.5	0.2	5199	chr3L	21749293	intron	Syn1 -	chr3L	21751892	intron	Syn1 -	chr3L	21754492	intron	Syn1 -	chr3L_5_21750001	chr3L_21750001	RAL-307_100b
2728	chr3L	21749309	21749329	chr3L	21754477	21754514	Doc	14	5178	17.0	11.5	14.2	0.9	5205	chr3L	21749309	intron	Syn1 -	chr3L	21751912	intron	Syn1 -	chr3L	21754514	intron	Syn1 -	chr3L_14_21750001	chr3L_21750001	RAL-307_100b
2729	chr3L	21749332	21749349	chr3L	21754472	21754478	Doc	17	5166	10.0	9.0	9.5	1.6	5146	chr3L	21749332	intron	Syn1 -	chr3L	21751905	intron	Syn1 -	chr3L	21754478	intron	Syn1 -	chr3L_17_21750001	chr3L_21750001	RAL-307_100b
2742	chr3L	21952431	21952484	chr3L	21953194	21953252	transib1	35	764	12.0	14.5	13.2	2.5	821	chr3L	21952431	intergenic	not near genes	chr3L	21952842	intergenic	not near genes	chr3L	21953252	intergenic	not near genes	chr3L_35_21950001	chr3L_21950001	RAL-307_100b
2746	chr3L	22099653	22099657	chr3L	22105864	22105868	3S18	7	6211	46.5	18.0	32.2	0.2	6215	chr3L	22099653	intergenic	not near genes	chr3L	22102760	intergenic	not near genes	chr3L	22105868	intergenic	not near genes	chr3L_7_22100001	chr3L_22100001	RAL-307_100b
2747	chr3L	22099658	22099705	chr3L	22105863	22105900	3S18	62	6203	19.5	17.0	18.2	3.2	6242	chr3L	22099658	intergenic	not near genes	chr3L	22102779	intergenic	not near genes	chr3L	22105900	intergenic	not near genes	chr3L_62_22100001	chr3L_22100001	RAL-307_100b
2757	chr3L	22555745	22555802	chr3L	22563240	22563244	blood	56	7489	16.5	8.0	12.2	4.2	7499	chr3L	22555745	intergenic	not near genes	chr3L	22559494	intergenic	not near genes	chr3L	22563244	intergenic	not near genes	chr3L_56_22555001	chr3L_22555001	RAL-307_100b
2758	chr3L	22577598	22577612	chr3L	22582411	22582425	Doc	11	4809	40.5	16.5	28.5	0.4	4827	chr3L	22577598	intergenic	not near genes	chr3L	22580012	intergenic	not near genes	chr3L	22582425	3` UTR	CG14459 -	chr3L_11_22580001	chr3L_22580001	RAL-307_100b
2759	chr3L	22577613	22577625	chr3L	22582410	22582411	Doc	14	4803	30.0	16.0	23.0	0.6	4798	chr3L	22577613	intergenic	not near genes	chr3L	22580012	intergenic	not near genes	chr3L	22582411	3` UTR	CG14459 -	chr3L_14_22580001	chr3L_22580001	RAL-307_100b
2760	chr3L	22577628	22577637	chr3L	22582409	22582450	Doc	17	4807	21.5	16.0	18.8	0.9	4822	chr3L	22577628	intergenic	not near genes	chr3L	22580039	intergenic	not near genes	chr3L	22582450	3` UTR	CG14459 -	chr3L_17_22580001	chr3L_22580001	RAL-307_100b
2761	chr3L	22577638	22577651	chr3L	22582406	22582419	Doc	15	4795	14.5	15.0	14.8	0.9	4781	chr3L	22577638	intergenic	not near genes	chr3L	22580028	intergenic	not near genes	chr3L	22582419	3` UTR	CG14459 -	chr3L_15_22580001	chr3L_22580001	RAL-307_100b
2763	chr3L	22617163	22617222	chr3L	22624640	22624691	blood	47	7473	18.5	13.5	16.0	2.8	7528	chr3L	22617163	intron	CG14459 -	chr3L	22620927	intron	CG14459 -	chr3L	22624691	intron	CG14459 -	chr3L_47_22620001	chr3L_22620001	RAL-307_100b
2769	chr3L	22865964	22866010	chr3L	22867122	22867148	Doc	45	1155	17.0	13.5	15.2	2.8	1184	chr3L	22865964	intron	CG33170 +	chr3L	22866556	intron	CG33170 +	chr3L	22867148	intron	CG33170 +	chr3L_45_22865001	chr3L_22865001	RAL-307_100b
2780	chr3L	22982452	22982481	chr3L	22982875	22982904	INE-1	30	421	14.5	32.0	23.2	1.2	452	chr3L	22982452	intergenic	not near genes	chr3L	22982678	intergenic	not near genes	chr3L	22982904	intergenic	not near genes	chr3L_30_22980001	chr3L_22980001	RAL-307_100b
2781	chr3L	22989839	22989854	chr3L	22996838	22996853	297	18	6997	41.0	19.0	30.0	0.6	7014	chr3L	22989839	intergenic	not near genes	chr3L	22993346	intergenic	not near genes	chr3L	22996853	intergenic	not near genes	chr3L_18_22990001	chr3L_22990001	RAL-307_100b
2782	chr3L	22989855	22989895	chr3L	22996835	22996884	297	47	6994	18.0	17.5	17.8	2.5	7029	chr3L	22989855	intergenic	not near genes	chr3L	22993370	intergenic	not near genes	chr3L	22996884	intergenic	not near genes	chr3L_47_22990001	chr3L_22990001	RAL-307_100b
2785	chr3L	22753753	22753753	chr3L	23027560	23027566	INE-1	5	273808	68.0	40.5	54.2	0.1	273813	chr3L	22753753	intron	SPoCk +	chr3L	22890660	intron	slif +	chr3L	23027566	intron	nrm +	chr3L_5_22890001	chr3L_22890001	RAL-307_100b
2786	chr3L	23042202	23042248	chr3L	23048979	23049026	gypsy6	37	6776	22.0	19.5	20.8	1.7	6824	chr3L	23042202	intergenic	not near genes	chr3L	23045614	intergenic	not near genes	chr3L	23049026	intergenic	not near genes	chr3L_37_23045001	chr3L_23045001	RAL-307_100b
2787	chr3L	23042250	23042258	chr3L	23048978	23049011	gypsy6	8	6767	14.0	18.5	16.2	0.5	6761	chr3L	23042250	intergenic	not near genes	chr3L	23045630	intergenic	not near genes	chr3L	23049011	intergenic	not near genes	chr3L_8_23045001	chr3L_23045001	RAL-307_100b
2788	chr3L	23062869	23062884	chr3L	25074004	25074007	Tirant	12	2011133	50.0	53.0	51.5	0.2	2011138	chr3L	23062869	intergenic	not near genes	chr3L	24068438	intergenic	not near genes	chr3L	25074007	intergenic	not near genes	chr3L_12_24065001	chr3L_24065001	RAL-307_100b
2796	chr3L	23665512	23665529	chr3L	23665624	23665644	gypsy8	20	114	93.5	104.5	99.0	0.2	132	chr3L	23665512	intron	AGO3 +	chr3L	23665578	intron	AGO3 +	chr3L	23665644	intron	AGO3 +	chr3L_20_23665001	chr3L_23665001	RAL-307_100b
2797	chr3L	23848814	23848834	chr3L	23849663	23849679	R1A1-element	21	847	23.5	21.0	22.2	0.9	865	chr3L	23848814	intron	CG40470 -	chr3L	23849246	intron	CG40470 -	chr3L	23849679	intron	CG40470 -	chr3L_21_23845001	chr3L_23845001	RAL-307_100b
2799	chr3L	24012388	24012400	chr3L	24020754	24020766	roo	12	8366	23.5	18.5	21.0	0.5	8378	chr3L	24012388	intergenic	not near genes	chr3L	24016577	intergenic	not near genes	chr3L	24020766	intergenic	not near genes	chr3L_12_24015001	chr3L_24015001	RAL-307_100b
2800	chr3L	24012402	24012432	chr3L	24020747	24020793	roo	27	8362	15.5	15.0	15.2	1.7	8391	chr3L	24012402	intergenic	not near genes	chr3L	24016598	intergenic	not near genes	chr3L	24020793	intergenic	not near genes	chr3L_27_24015001	chr3L_24015001	RAL-307_100b
2802	chr3L	24168763	24168812	chr3L	24176116	24176161	ZAM	50	7348	24.0	22.0	23.0	2.1	7398	chr3L	24168763	intron	Snap25 +	chr3L	24172462	intron	Snap25 +	chr3L	24176161	intron	Snap25 +	chr3L_50_24170001	chr3L_24170001	RAL-307_100b
2803	chr3L	24168817	24168822	chr3L	24176115	24176175	ZAM	13	7340	17.5	21.0	19.2	0.6	7358	chr3L	24168817	intron	Snap25 +	chr3L	24172496	intron	Snap25 +	chr3L	24176175	intron	Snap25 +	chr3L_13_24170001	chr3L_24170001	RAL-307_100b
2805	chr3L	24791870	24791918	chr3L	24796674	24796714	Doc	30	4802	12.5	10.0	11.2	2.5	4844	chr3L	24791870	intergenic	not near genes	chr3L	24794292	intergenic	not near genes	chr3L	24796714	intergenic	not near genes	chr3L_30_24790001	chr3L_24790001	RAL-307_100b
2815	chr3L	25628491	25628519	chr3L	25633269	25633315	F-element	33	4790	16.0	12.0	14.0	2.2	4824	chr3L	25628491	intron	CG41343 -	chr3L	25630903	intron	CG41343 -	chr3L	25633315	intron	CG41343 -	chr3L_33_25630001	chr3L_25630001	RAL-307_100b
2816	chr3L	25824653	25824674	chr3L	27273495	27273499	F-element	13	1448838	46.0	66.0	56.0	0.2	1448846	chr3L	25824653	intron	CG40178 -	chr3L	26549076	intergenic	not near genes	chr3L	27273499	intergenic	not near genes	chr3L_13_26545001	chr3L_26545001	RAL-307_100b
2823	chr3L	23941244	23941245	chr3L	26882298	26882299	1360	5	2941054	57.5	6.5	32.0	0.2	2941055	chr3L	23941244	intron	CG40470 -	chr3L	25411772	intergenic	not near genes	chr3L	26882299	intergenic	not near genes	chr3L_5_25410001	chr3L_25410001	RAL-307_100b
2826	chr3L	27356090	27356107	chr3L	27357314	27357331	1360	18	1223	17.0	8.0	12.5	1.3	1241	chr3L	27356090	intron	Dbp80 +	chr3L	27356710	intron	Dbp80 +	chr3L	27357331	intron	Dbp80 +	chr3L_18_27355001	chr3L_27355001	RAL-307_100b
2833	chr3L	27727618	27727636	chr3L	27728750	27728760	G-element	10	1130	21.0	15.0	18.0	0.5	1142	chr3L	27727618	intergenic	not near genes	chr3L	27728189	intergenic	not near genes	chr3L	27728760	intergenic	not near genes	chr3L_10_27725001	chr3L_27725001	RAL-307_100b
2840	chr3L	27980671	27980731	chr3L	27985494	27985554	Doc	35	4821	10.5	12.5	11.5	2.8	4883	chr3L	27980671	intron	CG17514 -	chr3L	27983112	intron	CG17514 -	chr3L	27985554	intron	CG17514 -	chr3L_35_27980001	chr3L_27980001	RAL-307_100b
2846	chr3R	1252409	1252451	chr3R	1266230	1266237	297	9	13797	45.5	41.0	43.2	0.2	13828	chr3R	1252409	intergenic	not near genes	chr3R	1259323	intergenic	not near genes	chr3R	1266237	intergenic	not near genes	chr3R_9_1255001	chr3R_1255001	RAL-307_100b
2851	chr3R	1867172	1867174	chr3R	1954917	1954922	Doc3-element	4	87748	86.5	47.0	66.8	0.1	87750	chr3R	1867172	intron	CG42623 +	chr3R	1911047	intron	CG42623 +	chr3R	1954922	intergenic	not near genes	chr3R_4_1910001	chr3R_1910001	RAL-307_100b
2854	chr3R	1953138	1953187	chr3R	1958540	1958554	Cr1a	10	5370	65.5	63.5	64.5	0.2	5416	chr3R	1953138	intergenic	not near genes	chr3R	1955846	intergenic	not near genes	chr3R	1958554	intergenic	not near genes	chr3R_10_1955001	chr3R_1955001	RAL-307_100b
2855	chr3R	1511855	1511855	chr3R	2516753	2516756	297	5	1004897	32.0	75.0	53.5	0.1	1004901	chr3R	1511855	intergenic	not near genes	chr3R	2014306	intergenic	not near genes	chr3R	2516756	intergenic	not near genes	chr3R_5_2010001	chr3R_2010001	RAL-307_100b
2856	chr3R	1511854	1511857	chr3R	2516759	2516781	297	6	1004910	32.5	76.0	54.2	0.1	1004927	chr3R	1511854	intergenic	not near genes	chr3R	2014318	intergenic	not near genes	chr3R	2516781	intergenic	not near genes	chr3R_6_2010001	chr3R_2010001	RAL-307_100b
2859	chr3R	1446700	1446700	chr3R	2999354	2999354	invader2	4	1552654	31.5	46.0	38.8	0.1	1552654	chr3R	1446700	intron	CG40155 +	chr3R	2223027	intergenic	not near genes	chr3R	2999354	intron	CG42618 -	chr3R_4_2220001	chr3R_2220001	RAL-307_100b
2867	chr3R	3989283	3989294	chr3R	4068939	4068951	mdg1	9	79648	49.5	45.0	47.2	0.2	79668	chr3R	3989283	intergenic	not near genes	chr3R	4029117	intergenic	not near genes	chr3R	4068951	intergenic	not near genes	chr3R_9_4025001	chr3R_4025001	RAL-307_100b
2868	chr3R	4105017	4105065	chr3R	4110246	4110294	copia	19	5227	10.5	9.0	9.8	1.8	5277	chr3R	4105017	intergenic	not near genes	chr3R	4107656	intergenic	not near genes	chr3R	4110294	intergenic	not near genes	chr3R_19_4105001	chr3R_4105001	RAL-307_100b
2869	chr3R	4206046	4206101	chr3R	4211646	4211701	mdg3	49	5596	12.0	9.0	10.5	4.3	5655	chr3R	4206046	intron	CG14636 -	chr3R	4208874	intron	CG14636 -	chr3R	4211701	intron	CG14636 -	chr3R_49_4205001	chr3R_4205001	RAL-307_100b
2872	chr3R	4366733	4366745	chr3R	4375141	4375151	roo	12	8407	31.5	17.0	24.2	0.5	8418	chr3R	4366733	3` UTR	CG1090 +	chr3R	4370942	intergenic	not near genes	chr3R	4375151	5` UTR	CR44922 +	chr3R_12_4370001	chr3R_4370001	RAL-307_100b
2873	chr3R	4366747	4366788	chr3R	4375138	4375196	roo	44	8404	17.0	15.5	16.2	2.6	8449	chr3R	4366747	3` UTR	CG1090 +	chr3R	4370972	intergenic	not near genes	chr3R	4375196	5` UTR	CR44922 +	chr3R_44_4370001	chr3R_4370001	RAL-307_100b
2875	chr3R	4408388	4408418	chr3R	4412717	4412747	Juan	27	4328	30.0	20.0	25.0	1.0	4359	chr3R	4408388	intron	CG32944 -	chr3R	4410568	intron	CG32944 -	chr3R	4412747	intron	CG32944 -	chr3R_27_4410001	chr3R_4410001	RAL-307_100b
2876	chr3R	4408419	4408435	chr3R	4412715	4412764	Juan	19	4323	23.0	19.5	21.2	0.9	4345	chr3R	4408419	intron	CG32944 -	chr3R	4410592	intron	CG32944 -	chr3R	4412764	intron	CG32944 -	chr3R_19_4410001	chr3R_4410001	RAL-307_100b
2879	chr3R	4538901	4538904	chr3R	4540186	4540188	1360	4	1284	9.5	28.0	18.8	0.2	1287	chr3R	4538901	intron	CG34357 -	chr3R	4539544	intron	CG34357 -	chr3R	4540188	intron	CG34357 -	chr3R_4_4535001	chr3R_4535001	RAL-307_100b
2880	chr3R	4609524	4609535	chr3R	4610713	4610724	1360	13	1189	45.0	18.0	31.5	0.4	1200	chr3R	4609524	intergenic	not near genes	chr3R	4610124	intergenic	not near genes	chr3R	4610724	intergenic	not near genes	chr3R_13_4610001	chr3R_4610001	RAL-307_100b
2881	chr3R	4609537	4609578	chr3R	4610710	4610767	1360	42	1183	18.0	17.0	17.5	2.3	1230	chr3R	4609537	intergenic	not near genes	chr3R	4610152	intergenic	not near genes	chr3R	4610767	intergenic	not near genes	chr3R_42_4610001	chr3R_4610001	RAL-307_100b
2886	chr3R	4753219	4753230	chr3R	4757547	4757558	F-element	11	4327	45.0	22.0	33.5	0.3	4339	chr3R	4753219	intron,intron	atms +,CG44098 -	chr3R	4755388	intron,intron	atms +,CG44098 -	chr3R	4757558	intron,exon	atms +,CG44098 -	chr3R_11_4755001	chr3R_4755001	RAL-307_100b
2887	chr3R	4753233	4753259	chr3R	4757544	4757583	F-element	27	4323	30.5	20.0	25.2	1.0	4350	chr3R	4753233	intron,intron	atms +,CG44098 -	chr3R	4755408	intron,intron	atms +,CG44098 -	chr3R	4757583	intron,exon	atms +,CG44098 -	chr3R_27_4755001	chr3R_4755001	RAL-307_100b
2888	chr3R	4753260	4753278	chr3R	4757539	4757547	F-element	9	4302	20.0	18.0	19.0	0.5	4287	chr3R	4753260	intron,intron	atms +,CG44098 -	chr3R	4755404	intron,intron	atms +,CG44098 -	chr3R	4757547	intron,exon	atms +,CG44098 -	chr3R_9_4755001	chr3R_4755001	RAL-307_100b
2892	chr3R	4887452	4887512	chr3R	4894854	4894872	rover	40	7394	12.0	17.0	14.5	2.6	7420	chr3R	4887452	intergenic	not near genes	chr3R	4891162	intergenic	not near genes	chr3R	4894872	intergenic	not near genes	chr3R_40_4890001	chr3R_4890001	RAL-307_100b
2901	chr3R	5045819	5045877	chr3R	5052946	5053004	HMS-Beagle	42	7126	21.5	8.0	14.8	2.7	7185	chr3R	5045819	3` UTR	CR43635 -	chr3R	5049412	intergenic	not near genes	chr3R	5053004	intergenic	CR45588 -	chr3R_42_5045001	chr3R_5045001	RAL-307_100b
2902	chr3R	5067955	5068010	chr3R	5073497	5073552	mdg3	59	5540	15.0	19.5	17.2	3.2	5597	chr3R	5067955	intergenic	not near genes	chr3R	5070754	intergenic	not near genes	chr3R	5073552	intergenic	not near genes	chr3R_59_5070001	chr3R_5070001	RAL-307_100b
2911	chr3R	5338258	5338312	chr3R	5343606	5343664	Rt1c	50	5347	18.0	17.5	17.8	2.7	5406	chr3R	5338258	intron	mtd -	chr3R	5340961	intron	mtd -	chr3R	5343664	intron	mtd -	chr3R_50_5340001	chr3R_5340001	RAL-307_100b
2914	chr3R	5445935	5445980	chr3R	5452420	5452465	Burdock	41	6484	18.0	15.5	16.8	2.3	6530	chr3R	5445935	intron	CG14669 +	chr3R	5449200	intron	CG14669 +	chr3R	5452465	intron	CG14669 +	chr3R_41_5445001	chr3R_5445001	RAL-307_100b
2915	chr3R	5445981	5445992	chr3R	5452419	5452472	Burdock	15	6476	12.0	15.5	13.8	1.0	6491	chr3R	5445981	intron	CG14669 +	chr3R	5449226	intron	CG14669 +	chr3R	5452472	intron	CG14669 +	chr3R_15_5445001	chr3R_5445001	RAL-307_100b
2922	chr3R	5745998	5746046	chr3R	5746254	5746295	pogo	35	263	13.5	21.0	17.2	1.9	297	chr3R	5745998	3` UTR	Madm +	chr3R	5746146	3` UTR	Madm +	chr3R	5746295	3` UTR	Madm +	chr3R_35_5745001	chr3R_5745001	RAL-307_100b
2923	chr3R	5746990	5747046	chr3R	5753206	5753248	diver	47	6214	10.0	11.0	10.5	4.1	6258	chr3R	5746990	intergenic	Madm +	chr3R	5750119	intergenic	not near genes	chr3R	5753248	intergenic	CG2091 -	chr3R_47_5750001	chr3R_5750001	RAL-307_100b
2925	chr3R	5809088	5809144	chr3R	5809354	5809410	pogo	57	260	18.5	9.5	14.0	3.8	322	chr3R	5809088	3` UTR	CG11000 +	chr3R	5809249	3` UTR	CG11000 +	chr3R	5809410	3` UTR	CG11000 +	chr3R_57_5805001	chr3R_5805001	RAL-307_100b
2926	chr3R	5822358	5822409	chr3R	5823550	5823591	1360	45	1191	16.0	13.5	14.8	2.8	1233	chr3R	5822358	3` UTR	CG2023 -	chr3R	5822974	3` UTR	CG2023 -	chr3R	5823591	3` UTR	CG2023 -	chr3R_45_5820001	chr3R_5820001	RAL-307_100b
2930	chr3R	5927538	5927552	chr3R	5927802	5927814	pogo	7	264	43.0	18.5	30.8	0.2	276	chr3R	5927538	intron	CG34113 -	chr3R	5927676	intron	CG34113 -	chr3R	5927814	intron	CG34113 -	chr3R_7_5925001	chr3R_5925001	RAL-307_100b
2931	chr3R	5927557	5927580	chr3R	5927801	5927845	pogo	29	255	28.5	18.5	23.5	1.2	288	chr3R	5927557	intron	CG34113 -	chr3R	5927701	intron	CG34113 -	chr3R	5927845	intron	CG34113 -	chr3R_29_5925001	chr3R_5925001	RAL-307_100b
2936	chr3R	6015939	6015956	chr3R	6024445	6024462	Tirant	15	8505	36.5	24.5	30.5	0.5	8523	chr3R	6015939	intergenic	not near genes	chr3R	6020200	intergenic	not near genes	chr3R	6024462	intergenic	not near genes	chr3R_15_6020001	chr3R_6020001	RAL-307_100b
2937	chr3R	6015957	6015995	chr3R	6024441	6024496	Tirant	28	8500	12.5	21.0	16.8	1.6	8539	chr3R	6015957	intergenic	not near genes	chr3R	6020226	intergenic	not near genes	chr3R	6024496	intergenic	not near genes	chr3R_28_6020001	chr3R_6020001	RAL-307_100b
2940	chr3R	6121168	6121185	chr3R	6121381	6121422	BS	15	238	0.0	11.5	5.8	2.2	254	chr3R	6121168	intergenic	not near genes	chr3R	6121295	intergenic	not near genes	chr3R	6121422	intergenic	not near genes	chr3R_15_6120001	chr3R_6120001	RAL-307_100b
2941	chr3R	6158488	6158528	chr3R	6167096	6167136	Tirant	15	8607	24.5	15.5	20.0	0.7	8648	chr3R	6158488	intergenic	not near genes	chr3R	6162812	intergenic	not near genes	chr3R	6167136	intergenic	CG1077 +	chr3R_15_6160001	chr3R_6160001	RAL-307_100b
2942	chr3R	6158530	6158536	chr3R	6167094	6167134	Tirant	8	8594	20.0	14.0	17.0	0.4	8604	chr3R	6158530	intergenic	not near genes	chr3R	6162832	intergenic	not near genes	chr3R	6167134	intergenic	CG1077 +	chr3R_8_6160001	chr3R_6160001	RAL-307_100b
2943	chr3R	6175154	6175156	chr3R	6182445	6182453	HMS-Beagle2	7	7296	33.5	13.5	23.5	0.3	7299	chr3R	6175154	intergenic	Osi1 +	chr3R	6178804	intron	CR45194 +	chr3R	6182453	intergenic	CR45194 +	chr3R_7_6175001	chr3R_6175001	RAL-307_100b
2944	chr3R	6175157	6175205	chr3R	6182443	6182470	HMS-Beagle2	45	7289	15.5	11.0	13.2	3.2	7313	chr3R	6175157	intergenic	Osi1 +	chr3R	6178814	intron	CR45194 +	chr3R	6182470	intergenic	CR45194 +	chr3R_45_6175001	chr3R_6175001	RAL-307_100b
2951	chr3R	6510001	6510051	chr3R	6515107	6515117	jockey	42	5103	17.5	15.0	16.2	2.4	5116	chr3R	6510001	intergenic	not near genes	chr3R	6512559	intergenic	not near genes	chr3R	6515117	intergenic	not near genes	chr3R_42_6510001	chr3R_6510001	RAL-307_100b
2965	chr3R	6737475	6737487	chr3R	6739287	6739299	Doc	7	1811	31.0	12.0	21.5	0.3	1824	chr3R	6737475	intron	pb -	chr3R	6738387	intron	pb -	chr3R	6739299	intron	pb -	chr3R_7_6735001	chr3R_6735001	RAL-307_100b
2966	chr3R	6737493	6737525	chr3R	6739284	6739334	Doc	25	1804	12.0	11.0	11.5	2.0	1841	chr3R	6737493	intron	pb -	chr3R	6738414	intron	pb -	chr3R	6739334	intron	pb -	chr3R_25_6735001	chr3R_6735001	RAL-307_100b
2992	chr3R	7641035	7641096	chr3R	7642624	7642644	hobo	57	1585	18.5	14.0	16.2	3.3	1609	chr3R	7641035	intergenic	not near genes	chr3R	7641840	intergenic	not near genes	chr3R	7642644	intergenic	not near genes	chr3R_57_7640001	chr3R_7640001	RAL-307_100b
2994	chr3R	7729442	7729495	chr3R	7737405	7737436	Stalker2	43	7960	23.5	17.5	20.5	2.0	7994	chr3R	7729442	intergenic	not near genes	chr3R	7733439	intergenic	not near genes	chr3R	7737436	intergenic	not near genes	chr3R_43_7730001	chr3R_7730001	RAL-307_100b
3002	chr3R	7973295	7973344	chr3R	7974382	7974420	1360	30	1086	13.5	13.0	13.2	2.1	1125	chr3R	7973295	intergenic	not near genes	chr3R	7973858	intergenic	not near genes	chr3R	7974420	3` UTR	CD98hc -	chr3R_30_7970001	chr3R_7970001	RAL-307_100b
3005	chr3R	8090540	8090566	chr3R	8094042	8094068	297	28	3500	19.0	38.5	28.8	0.9	3528	chr3R	8090540	intergenic	CR44330 +	chr3R	8092304	intergenic	not near genes	chr3R	8094068	intergenic	CG7900 +	chr3R_28_8090001	chr3R_8090001	RAL-307_100b
3006	chr3R	8094387	8094439	chr3R	8099717	8099739	Transpac	38	5327	18.0	20.0	19.0	1.9	5352	chr3R	8094387	intron	CG7900 +	chr3R	8097063	intron	CG7900 +	chr3R	8099739	intron	CG7900 +	chr3R_38_8095001	chr3R_8095001	RAL-307_100b
3007	chr3R	8101740	8101745	chr3R	8104849	8104854	G2	4	3109	31.0	15.5	23.2	0.2	3114	chr3R	8101740	exon	CG7900 +	chr3R	8103297	intron	CG7900 +	chr3R	8104854	3` UTR	CG7900 +	chr3R_4_8100001	chr3R_8100001	RAL-307_100b
3008	chr3R	8101746	8101789	chr3R	8104847	8104850	G2	33	3103	13.5	15.5	14.5	2.1	3104	chr3R	8101746	exon	CG7900 +	chr3R	8103298	intron	CG7900 +	chr3R	8104850	3` UTR	CG7900 +	chr3R_33_8100001	chr3R_8100001	RAL-307_100b
3013	chr3R	8207537	8207583	chr3R	8208398	8208423	F-element	50	864	15.0	12.0	13.5	3.4	886	chr3R	8207537	intergenic	not near genes	chr3R	8207980	intergenic	not near genes	chr3R	8208423	intergenic	not near genes	chr3R_50_8205001	chr3R_8205001	RAL-307_100b
3019	chr3R	8402984	8402994	chr3R	8412175	8412185	roo	5	9191	46.0	23.0	34.5	0.1	9201	chr3R	8402984	intron	CG45263 -	chr3R	8407584	intron	CG45263 -	chr3R	8412185	intron	CG45263 -	chr3R_5_8405001	chr3R_8405001	RAL-307_100b
3020	chr3R	8402995	8403041	chr3R	8412171	8412201	roo	51	9185	19.0	22.0	20.5	2.4	9206	chr3R	8402995	intron	CG45263 -	chr3R	8407598	intron	CG45263 -	chr3R	8412201	intron	CG45263 -	chr3R_51_8405001	chr3R_8405001	RAL-307_100b
3027	chr3R	8570454	8570511	chr3R	8575113	8575171	HMS-Beagle	55	4656	7.5	15.0	11.2	4.5	4717	chr3R	8570454	intergenic	not near genes	chr3R	8572812	intergenic	not near genes	chr3R	8575171	intergenic	not near genes	chr3R_55_8570001	chr3R_8570001	RAL-307_100b
3029	chr3R	8601750	8601759	chr3R	8610928	8610931	roo	6	9177	41.0	20.5	30.8	0.2	9181	chr3R	8601750	intron	5-HT2B +	chr3R	8606340	intron	5-HT2B +	chr3R	8610931	intron	5-HT2B +	chr3R_6_8605001	chr3R_8605001	RAL-307_100b
3030	chr3R	8601760	8601765	chr3R	8610927	8610931	roo	8	9173	38.5	19.5	29.0	0.3	9171	chr3R	8601760	intron	5-HT2B +	chr3R	8606346	intron	5-HT2B +	chr3R	8610931	intron	5-HT2B +	chr3R_8_8605001	chr3R_8605001	RAL-307_100b
3031	chr3R	8601767	8601797	chr3R	8610923	8610958	roo	25	9173	21.5	18.0	19.8	1.2	9191	chr3R	8601767	intron	5-HT2B +	chr3R	8606362	intron	5-HT2B +	chr3R	8610958	intron	5-HT2B +	chr3R_25_8605001	chr3R_8605001	RAL-307_100b
3035	chr3R	8707331	8707362	chr3R	8709797	8709828	jockey	23	2465	32.5	23.5	28.0	0.8	2497	chr3R	8707331	intergenic	not near genes	chr3R	8708580	intergenic	not near genes	chr3R	8709828	intergenic	not near genes	chr3R_23_8705001	chr3R_8705001	RAL-307_100b
3036	chr3R	8707363	8707383	chr3R	8709796	8709828	jockey	25	2458	21.5	23.0	22.2	1.1	2465	chr3R	8707363	intergenic	not near genes	chr3R	8708596	intergenic	not near genes	chr3R	8709828	intergenic	not near genes	chr3R_25_8705001	chr3R_8705001	RAL-307_100b
3039	chr3R	8868773	8868783	chr3R	8872642	8872642	297	4	3866	22.0	11.0	16.5	0.2	3869	chr3R	8868773	intron	pyd -	chr3R	8870708	intron	pyd -	chr3R	8872642	intron	pyd -	chr3R_4_8870001	chr3R_8870001	RAL-307_100b
3042	chr3R	8894850	8894883	chr3R	8896031	8896064	1360	28	1180	24.0	15.0	19.5	1.4	1214	chr3R	8894850	intron	pyd -	chr3R	8895457	intron	pyd -	chr3R	8896064	intron	pyd -	chr3R_28_8895001	chr3R_8895001	RAL-307_100b
3043	chr3R	8894885	8894903	chr3R	8896029	8896084	1360	23	1177	15.5	14.5	15.0	1.4	1199	chr3R	8894885	intron	pyd -	chr3R	8895484	intron	pyd -	chr3R	8896084	intron	pyd -	chr3R_23_8895001	chr3R_8895001	RAL-307_100b
3044	chr3R	8898197	8898212	chr3R	8913802	8913817	297	12	15603	43.0	21.0	32.0	0.4	15620	chr3R	8898197	intron	pyd -	chr3R	8906007	intron	pyd -	chr3R	8913817	intron	pyd -	chr3R_12_8905001	chr3R_8905001	RAL-307_100b
3052	chr3R	9278765	9278772	chr3R	9284050	9284057	Rt1a	5	5285	38.5	24.5	31.5	0.2	5292	chr3R	9278765	intergenic	not near genes	chr3R	9281411	intergenic	not near genes	chr3R	9284057	intergenic	not near genes	chr3R_5_9280001	chr3R_9280001	RAL-307_100b
3053	chr3R	9278774	9278777	chr3R	9284046	9284062	Rt1a	7	5282	35.5	23.5	29.5	0.2	5288	chr3R	9278774	intergenic	not near genes	chr3R	9281418	intergenic	not near genes	chr3R	9284062	intergenic	not near genes	chr3R_7_9280001	chr3R_9280001	RAL-307_100b
3054	chr3R	9278781	9278816	chr3R	9284040	9284051	Rt1a	25	5275	16.0	19.5	17.8	1.3	5270	chr3R	9278781	intergenic	not near genes	chr3R	9281416	intergenic	not near genes	chr3R	9284051	intergenic	not near genes	chr3R_25_9280001	chr3R_9280001	RAL-307_100b
3056	chr3R	9304513	9304526	chr3R	9311817	9311823	Stalker4	6	7306	42.5	18.5	30.5	0.2	7310	chr3R	9304513	intron	CG8861 -	chr3R	9308168	intron	CG8861 -	chr3R	9311823	intron	CG8861 -	chr3R_6_9305001	chr3R_9305001	RAL-307_100b
3057	chr3R	9304543	9304549	chr3R	9311813	9311825	Stalker4	4	7274	30.0	14.5	22.2	0.2	7282	chr3R	9304543	intron	CG8861 -	chr3R	9308184	intron	CG8861 -	chr3R	9311825	intron	CG8861 -	chr3R_4_9305001	chr3R_9305001	RAL-307_100b
3058	chr3R	9319552	9319604	chr3R	9320012	9320040	jockey	50	456	15.0	19.5	17.2	2.7	488	chr3R	9319552	intron	CG8861 -	chr3R	9319796	intron	CG8861 -	chr3R	9320040	intron	CG8861 -	chr3R_50_9315001	chr3R_9315001	RAL-307_100b
3059	chr3R	9361810	9361817	chr3R	9362063	9362083	pogo	7	264	18.5	8.0	13.2	0.5	273	chr3R	9361810	3` UTR	CG45050 +	chr3R	9361946	3` UTR	CG45050 +	chr3R	9362083	3` UTR	CG45050 +	chr3R_7_9360001	chr3R_9360001	RAL-307_100b
3060	chr3R	9361818	9361844	chr3R	9362059	9362110	pogo	33	262	8.5	8.0	8.2	3.6	292	chr3R	9361818	3` UTR	CG45050 +	chr3R	9361964	3` UTR	CG45050 +	chr3R	9362110	3` UTR	CG45050 +	chr3R_33_9360001	chr3R_9360001	RAL-307_100b
3075	chr3R	10231774	10231815	chr3R	10237366	10237417	mdg3	47	5597	10.0	24.0	17.0	2.6	5643	chr3R	10231774	intron	CG42795 +	chr3R	10234596	intron	CG42795 +	chr3R	10237417	intron	CG42795 +	chr3R_47_10230001	chr3R_10230001	RAL-307_100b
3076	chr3R	10255356	10255383	chr3R	10260821	10260848	I-element	26	5464	24.5	19.5	22.0	1.1	5492	chr3R	10255356	3` UTR	Sirt6 -	chr3R	10258102	intron	Sirt6 -	chr3R	10260848	exon	Sirt6 -	chr3R_26_10255001	chr3R_10255001	RAL-307_100b
3098	chr3R	10957838	10957885	chr3R	10963252	10963299	Rt1c	40	5408	21.5	18.0	19.8	1.9	5461	chr3R	10957838	intergenic	not near genes	chr3R	10960568	intergenic	not near genes	chr3R	10963299	intergenic	not near genes	chr3R_40_10960001	chr3R_10960001	RAL-307_100b
3104	chr3R	11065573	11065617	chr3R	11071243	11071294	297	6	5666	6.5	8.0	7.2	0.7	5721	chr3R	11065573	intergenic	not near genes	chr3R	11068434	intergenic	not near genes	chr3R	11071294	intergenic	not near genes	chr3R_6_11065001	chr3R_11065001	RAL-307_100b
3114	chr3R	11247218	11247228	chr3R	11247324	11247334	INE-1	4	106	38.0	7.0	22.5	0.2	116	chr3R	11247218	intergenic	CG5214 +,CR43283 -	chr3R	11247276	intergenic	CR43283 -,CG5214 +	chr3R	11247334	intergenic	CR43283 -,CG5214 +	chr3R_4_11245001	chr3R_11245001	RAL-307_100b
3119	chr3R	11379212	11379264	chr3R	11388392	11388421	roo	35	9173	12.5	17.0	14.8	2.2	9209	chr3R	11379212	intron	pros +	chr3R	11383816	intron	pros +	chr3R	11388421	intron	pros +	chr3R_35_11380001	chr3R_11380001	RAL-307_100b
3131	chr3R	11841037	11841096	chr3R	11846253	11846299	BS	53	5212	17.5	20.0	18.8	2.7	5262	chr3R	11841037	intron	CG6959 -	chr3R	11843668	intron	CG6959 -	chr3R	11846299	intron	CG6959 -	chr3R_53_11840001	chr3R_11840001	RAL-307_100b
3140	chr3R	12022859	12022912	chr3R	12025061	12025114	pogo	39	2198	13.0	14.5	13.8	2.6	2255	chr3R	12022859	intergenic	not near genes	chr3R	12023986	intergenic	not near genes	chr3R	12025114	intergenic	not near genes	chr3R_39_12020001	chr3R_12020001	RAL-307_100b
3168	chr3R	12864557	12864588	chr3R	12865067	12865098	roo	9	508	5.0	10.5	7.8	1.0	541	chr3R	12864557	intergenic	not near genes	chr3R	12864828	intergenic	not near genes	chr3R	12865098	intergenic	not near genes	chr3R_9_12860001	chr3R_12860001	RAL-307_100b
3170	chr3R	12920134	12920184	chr3R	12925362	12925404	copia	43	5225	10.0	16.0	13.0	3.1	5270	chr3R	12920134	intron	beat-Vb +	chr3R	12922769	intron	beat-Vb +	chr3R	12925404	intron	beat-Vb +	chr3R_43_12920001	chr3R_12920001	RAL-307_100b
3176	chr3R	13135802	13135857	chr3R	13138002	13138057	pogo	38	2199	17.0	17.0	17.0	2.1	2255	chr3R	13135802	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13136930	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13138057	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R_38_13135001	chr3R_13135001	RAL-307_100b
3177	chr3R	13143014	13143066	chr3R	13148615	13148667	mdg3	65	5594	15.0	18.5	16.8	3.7	5653	chr3R	13143014	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13145840	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13148667	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R_65_13145001	chr3R_13145001	RAL-307_100b
3182	chr3R	13311636	13311641	chr3R	13318893	13318917	Doc	11	7273	85.5	17.5	51.5	0.2	7281	chr3R	13311636	exon	CG32473 +	chr3R	13315276	intergenic	not near genes	chr3R	13318917	intergenic	CG45080 -	chr3R_11_13315001	chr3R_13315001	RAL-307_100b
3183	chr3R	13313914	13313916	chr3R	13318882	13318898	Doc	10	4975	0.0	12.5	6.2	1.4	4984	chr3R	13313914	intergenic	not near genes	chr3R	13316406	intergenic	not near genes	chr3R	13318898	intergenic	CG45080 -	chr3R_10_13315001	chr3R_13315001	RAL-307_100b
3195	chr3R	13517202	13517255	chr3R	13520044	13520097	jockey	16	2841	11.5	0.0	5.8	2.4	2895	chr3R	13517202	intergenic	not near genes	chr3R	13518650	intergenic	not near genes	chr3R	13520097	intergenic	not near genes	chr3R_16_13515001	chr3R_13515001	RAL-307_100b
3233	chr3R	14180788	14180835	chr3R	14185578	14185625	F-element	49	4789	13.0	17.5	15.2	3.0	4837	chr3R	14180788	intron	Dop1R1 -	chr3R	14183206	intron	Dop1R1 -	chr3R	14185625	intron	Dop1R1 -	chr3R_49_14180001	chr3R_14180001	RAL-307_100b
3236	chr3R	14194456	14194460	chr3R	14203610	14203614	roo	6	9154	16.0	1.0	8.5	0.6	9158	chr3R	14194456	intron	Dop1R1 -	chr3R	14199035	intron	Dop1R1 -	chr3R	14203614	intron	Dop1R1 -	chr3R_6_14195001	chr3R_14195001	RAL-307_100b
3237	chr3R	14246371	14246381	chr3R	14247890	14247902	jockey	11	1519	32.5	14.0	23.2	0.5	1531	chr3R	14246371	intergenic	not near genes	chr3R	14247136	intergenic	not near genes	chr3R	14247902	intergenic	not near genes	chr3R_11_14245001	chr3R_14245001	RAL-307_100b
3238	chr3R	14246382	14246411	chr3R	14247887	14247912	jockey	40	1510	17.0	13.0	15.0	2.5	1530	chr3R	14246382	intergenic	not near genes	chr3R	14247147	intergenic	not near genes	chr3R	14247912	intergenic	not near genes	chr3R_40_14245001	chr3R_14245001	RAL-307_100b
3239	chr3R	14246413	14246418	chr3R	14247883	14247932	jockey	5	1486	14.5	10.5	12.5	0.4	1519	chr3R	14246413	intergenic	not near genes	chr3R	14247172	intergenic	not near genes	chr3R	14247932	intergenic	not near genes	chr3R_5_14245001	chr3R_14245001	RAL-307_100b
3264	chr3R	15041403	15041451	chr3R	15045196	15045244	Doc	38	3791	8.5	11.5	10.0	3.5	3841	chr3R	15041403	intergenic	not near genes	chr3R	15043324	intergenic	not near genes	chr3R	15045244	intergenic	not near genes	chr3R_38_15040001	chr3R_15040001	RAL-307_100b
3266	chr3R	15059255	15059476	chr3R	15059474	15059588	BS	28	200	0.0	0.0	0.0	28.0	333	chr3R	15059255	intron	dpr9 -	chr3R	15059422	intron	dpr9 -	chr3R	15059588	intron	dpr9 -	chr3R_28_15055001	chr3R_15055001	RAL-307_100b
3268	chr3R	15079781	15079839	chr3R	15080047	15080090	pogo	47	263	14.5	11.0	12.8	3.4	309	chr3R	15079781	3` UTR	CG6966 -	chr3R	15079936	3` UTR	CG6966 -	chr3R	15080090	3` UTR	CG6966 -	chr3R_47_15075001	chr3R_15075001	RAL-307_100b
3270	chr3R	15102469	15102526	chr3R	15109751	15109806	412	45	7279	10.5	12.0	11.2	3.7	7337	chr3R	15102469	intron	CG42788 -	chr3R	15106138	intron	CG42788 -	chr3R	15109806	intron	CG42788 -	chr3R_45_15105001	chr3R_15105001	RAL-307_100b
3272	chr3R	15132041	15132043	chr3R	15135126	15135128	Juan	5	3085	78.0	47.0	62.5	0.1	3087	chr3R	15132041	intergenic	CG42788 -	chr3R	15133584	intergenic	not near genes	chr3R	15135128	intergenic	CG6912 -	chr3R_5_15130001	chr3R_15130001	RAL-307_100b
3273	chr3R	15132044	15132072	chr3R	15135125	15135125	Juan	52	3083	47.5	46.5	47.0	1.1	3081	chr3R	15132044	intergenic	CG42788 -	chr3R	15133584	intergenic	not near genes	chr3R	15135125	intergenic	CG6912 -	chr3R_52_15130001	chr3R_15130001	RAL-307_100b
3274	chr3R	15132073	15132077	chr3R	15135114	15135147	Juan	6	3075	43.0	36.5	39.8	0.1	3074	chr3R	15132073	intergenic	CG42788 -	chr3R	15133610	intergenic	not near genes	chr3R	15135147	3` UTR	CG6912 -	chr3R_6_15130001	chr3R_15130001	RAL-307_100b
3276	chr3R	15162519	15162533	chr3R	15167312	15167326	F-element	11	4793	37.0	12.0	24.5	0.4	4807	chr3R	15162519	intron	Gyc88E +	chr3R	15164922	intron	Gyc88E +	chr3R	15167326	intron	Gyc88E +	chr3R_11_15160001	chr3R_15160001	RAL-307_100b
3277	chr3R	15162534	15162562	chr3R	15167311	15167341	F-element	19	4789	20.5	11.5	16.0	1.1	4807	chr3R	15162534	intron	Gyc88E +	chr3R	15164938	intron	Gyc88E +	chr3R	15167341	intron	Gyc88E +	chr3R_19_15160001	chr3R_15160001	RAL-307_100b
3284	chr3R	15601145	15601194	chr3R	15608692	15608731	412	61	7543	20.0	18.5	19.2	3.0	7586	chr3R	15601145	intergenic	not near genes	chr3R	15604938	intergenic	not near genes	chr3R	15608731	intergenic	not near genes	chr3R_61_15600001	chr3R_15600001	RAL-307_100b
3287	chr3R	15618733	15618764	chr3R	15626227	15626263	blood	19	7497	7.5	22.5	15.0	1.2	7530	chr3R	15618733	intergenic	not near genes	chr3R	15622498	intergenic	not near genes	chr3R	15626263	intergenic	not near genes	chr3R_19_15620001	chr3R_15620001	RAL-307_100b
3294	chr3R	15735220	15735235	chr3R	15739965	15739980	F-element	15	4745	11.0	11.5	11.2	1.2	4760	chr3R	15735220	intergenic	not near genes	chr3R	15737600	intergenic	not near genes	chr3R	15739980	intergenic	not near genes	chr3R_15_15735001	chr3R_15735001	RAL-307_100b
3324	chr3R	16756299	16756304	chr3R	16762515	16762520	diver	5	6216	30.0	3.5	16.8	0.3	6221	chr3R	16756299	intron	bxd -	chr3R	16759410	intron	bxd -	chr3R	16762520	intron	bxd -	chr3R_5_16755001	chr3R_16755001	RAL-307_100b
3325	chr3R	16756305	16756351	chr3R	16762509	16762567	diver	36	6211	6.5	3.0	4.8	6.2	6262	chr3R	16756305	intron	bxd -	chr3R	16759436	intron	bxd -	chr3R	16762567	intron	bxd -	chr3R_36_16755001	chr3R_16755001	RAL-307_100b
3334	chr3R	17294643	17294649	chr3R	17295096	17295102	BS	8	453	37.0	0.0	18.5	0.4	459	chr3R	17294643	intergenic	not near genes	chr3R	17294872	intergenic	not near genes	chr3R	17295102	intergenic	not near genes	chr3R_8_17290001	chr3R_17290001	RAL-307_100b
3335	chr3R	17294650	17294704	chr3R	17295093	17295162	BS	20	451	16.0	0.5	8.2	2.2	512	chr3R	17294650	intergenic	not near genes	chr3R	17294906	intergenic	not near genes	chr3R	17295162	intergenic	not near genes	chr3R_20_17290001	chr3R_17290001	RAL-307_100b
3337	chr3R	17346667	17346714	chr3R	17348255	17348299	F-element	42	1587	13.5	24.5	19.0	2.1	1632	chr3R	17346667	intron	beat-IIa -	chr3R	17347483	intron	beat-IIa -	chr3R	17348299	intron	beat-IIa -	chr3R_42_17345001	chr3R_17345001	RAL-307_100b
3352	chr3R	17591267	17591269	chr3R	17591726	17591730	F-element	4	460	46.5	20.0	33.2	0.1	463	chr3R	17591267	intergenic	not near genes	chr3R	17591498	intergenic	not near genes	chr3R	17591730	intergenic	not near genes	chr3R_4_17590001	chr3R_17590001	RAL-307_100b
3353	chr3R	17591274	17591277	chr3R	17591724	17591738	F-element	6	457	40.5	17.5	29.0	0.2	464	chr3R	17591274	intergenic	not near genes	chr3R	17591506	intergenic	not near genes	chr3R	17591738	intergenic	not near genes	chr3R_6_17590001	chr3R_17590001	RAL-307_100b
3354	chr3R	17591280	17591324	chr3R	17591723	17591749	F-element	41	450	14.0	17.0	15.5	2.5	469	chr3R	17591280	intergenic	not near genes	chr3R	17591514	intergenic	not near genes	chr3R	17591749	intergenic	not near genes	chr3R_41_17590001	chr3R_17590001	RAL-307_100b
3355	chr3R	17638328	17638339	chr3R	17638839	17638850	roo	10	511	2.0	19.5	10.8	0.8	522	chr3R	17638328	intron	CG43175 +	chr3R	17638589	intron	CG43175 +	chr3R	17638850	intron,intron	CG43175 +,CR45222 +	chr3R_10_17635001	chr3R_17635001	RAL-307_100b
3356	chr3R	17657633	17657661	chr3R	17657809	17657837	INE-1	13	174	0.0	21.5	10.8	1.1	204	chr3R	17657633	intron	CG14322 +	chr3R	17657735	intron	CG14322 +	chr3R	17657837	intron	CG14322 +	chr3R_13_17655001	chr3R_17655001	RAL-307_100b
3360	chr3R	17763135	17763155	chr3R	17763646	17763651	roo	5	508	51.5	19.0	35.2	0.1	516	chr3R	17763135	5` UTR	TyrR -	chr3R	17763393	intergenic	TyrR -	chr3R	17763651	intergenic	TyrR -	chr3R_5_17760001	chr3R_17760001	RAL-307_100b
3371	chr3R	17925832	17925862	chr3R	17927324	17927354	hobo	35	1489	27.0	26.5	26.8	1.3	1522	chr3R	17925832	intron	cpo +	chr3R	17926593	intron	cpo +	chr3R	17927354	intron	cpo +	chr3R_35_17925001	chr3R_17925001	RAL-307_100b
3372	chr3R	17925864	17925883	chr3R	17927320	17927361	hobo	17	1484	17.5	25.5	21.5	0.8	1497	chr3R	17925864	intron	cpo +	chr3R	17926612	intron	cpo +	chr3R	17927361	intron	cpo +	chr3R_17_17925001	chr3R_17925001	RAL-307_100b
3383	chr3R	18061548	18061615	chr3R	18063147	18063208	F-element	7	1597	0.0	0.0	0.0	7.0	1660	chr3R	18061548	intergenic	not near genes	chr3R	18062378	intergenic	not near genes	chr3R	18063208	intergenic	not near genes	chr3R_7_18060001	chr3R_18060001	RAL-307_100b
3399	chr3R	18331757	18331765	chr3R	18333276	18333278	hopper2	4	1518	34.0	0.0	17.0	0.2	1521	chr3R	18331757	3` UTR	CG15803 -	chr3R	18332518	intron	CG15803 -	chr3R	18333278	3` UTR	CG15803 -	chr3R_4_18330001	chr3R_18330001	RAL-307_100b
3410	chr3R	18606497	18606528	chr3R	18610749	18610785	F-element	20	4257	9.0	19.5	14.2	1.3	4288	chr3R	18606497	intron,intron	qin +,CG14304 -	chr3R	18608641	intron,intron	qin +,CG14304 -	chr3R	18610785	intron,intron	qin +,CG14304 -	chr3R_20_18605001	chr3R_18605001	RAL-307_100b
3434	chr3R	19192941	19193007	chr3R	19197279	19197336	F-element	19	4333	0.5	12.5	6.5	2.5	4395	chr3R	19192941	intron	CG31475 +	chr3R	19195138	intron	CG31475 +	chr3R	19197336	intron	CG31475 +	chr3R_19_19195001	chr3R_19195001	RAL-307_100b
3462	chr3R	20109511	20109566	chr3R	20114742	20114797	copia	53	5230	13.0	11.0	12.0	4.1	5286	chr3R	20109511	intergenic	not near genes	chr3R	20112154	intergenic	not near genes	chr3R	20114797	intergenic	CG10887 +	chr3R_53_20110001	chr3R_20110001	RAL-307_100b
3463	chr3R	20156668	20156698	chr3R	20165863	20165873	roo	27	9190	27.5	21.0	24.2	1.1	9205	chr3R	20156668	intergenic	not near genes	chr3R	20161270	intergenic	not near genes	chr3R	20165873	intergenic	not near genes	chr3R_27_20160001	chr3R_20160001	RAL-307_100b
3464	chr3R	20156700	20156719	chr3R	20165860	20165914	roo	20	9188	17.5	19.5	18.5	1.0	9214	chr3R	20156700	intergenic	not near genes	chr3R	20161307	intergenic	not near genes	chr3R	20165914	intergenic	not near genes	chr3R_20_20160001	chr3R_20160001	RAL-307_100b
3469	chr3R	20266490	20266545	chr3R	20272986	20273018	Burdock	56	6492	13.0	16.0	14.5	3.6	6528	chr3R	20266490	intron	cic +	chr3R	20269754	intron	cic +	chr3R	20273018	intron	cic +	chr3R_56_20265001	chr3R_20265001	RAL-307_100b
3472	chr3R	20330976	20330979	chr3R	20331487	20331490	roo	5	511	35.0	14.5	24.8	0.2	514	chr3R	20330976	intergenic	Sirt2 +	chr3R	20331233	intergenic	Sirt2 +	chr3R	20331490	intergenic	not near genes	chr3R_5_20330001	chr3R_20330001	RAL-307_100b
3473	chr3R	20330980	20331027	chr3R	20331484	20331538	roo	32	510	11.5	13.0	12.2	2.4	558	chr3R	20330980	intergenic	Sirt2 +	chr3R	20331259	intergenic	Sirt2 +	chr3R	20331538	intergenic	not near genes	chr3R_32_20330001	chr3R_20330001	RAL-307_100b
3482	chr3R	20506567	20506616	chr3R	20507395	20507418	BS	53	824	1.5	19.0	10.2	4.7	851	chr3R	20506567	intergenic	Or92a +	chr3R	20506992	intergenic	CG4288 -	chr3R	20507418	3` UTR	CG4288 -	chr3R_53_20505001	chr3R_20505001	RAL-307_100b
3483	chr3R	20512980	20513032	chr3R	20515708	20515760	opus	27	2725	12.0	7.0	9.5	2.6	2780	chr3R	20512980	intergenic	not near genes	chr3R	20514370	intergenic	not near genes	chr3R	20515760	intergenic	not near genes	chr3R_27_20510001	chr3R_20510001	RAL-307_100b
3499	chr3R	20854472	20854490	chr3R	20859287	20859303	Doc	8	4812	37.5	21.5	29.5	0.3	4831	chr3R	20854472	intron	Ir93a -	chr3R	20856888	intron	Ir93a -	chr3R	20859303	exon	Ir93a -	chr3R_8_20855001	chr3R_20855001	RAL-307_100b
3500	chr3R	20854495	20854504	chr3R	20859278	20859319	Doc	8	4797	35.5	19.0	27.2	0.3	4824	chr3R	20854495	intron	Ir93a -	chr3R	20856907	intron	Ir93a -	chr3R	20859319	exon	Ir93a -	chr3R_8_20855001	chr3R_20855001	RAL-307_100b
3501	chr3R	20854509	20854520	chr3R	20859274	20859285	Doc	5	4770	27.5	16.5	22.0	0.2	4776	chr3R	20854509	intron	Ir93a -	chr3R	20856897	intron	Ir93a -	chr3R	20859285	exon	Ir93a -	chr3R_5_20855001	chr3R_20855001	RAL-307_100b
3510	chr3R	21141653	21141671	chr3R	21150159	21150173	Tirant	20	8503	37.5	18.5	28.0	0.7	8520	chr3R	21141653	intron	SNF4Agamma +	chr3R	21145913	intron	SNF4Agamma +	chr3R	21150173	intron	SNF4Agamma +	chr3R_20_21145001	chr3R_21145001	RAL-307_100b
3511	chr3R	21141672	21141682	chr3R	21150155	21150181	Tirant	20	8496	31.5	17.0	24.2	0.8	8509	chr3R	21141672	intron	SNF4Agamma +	chr3R	21145926	intron	SNF4Agamma +	chr3R	21150181	intron	SNF4Agamma +	chr3R_20_21145001	chr3R_21145001	RAL-307_100b
3512	chr3R	21141683	21141707	chr3R	21150153	21150211	Tirant	12	8490	19.5	16.5	18.0	0.6	8528	chr3R	21141683	intron	SNF4Agamma +	chr3R	21145947	intron	SNF4Agamma +	chr3R	21150211	intron	SNF4Agamma +	chr3R_12_21145001	chr3R_21145001	RAL-307_100b
3536	chr3R	21761101	21761118	chr3R	21768513	21768535	mdg1	15	7414	35.5	21.0	28.2	0.5	7434	chr3R	21761101	exon	CG42335 +	chr3R	21764818	intron	CG42335 +	chr3R	21768535	exon	CG42335 +	chr3R_15_21760001	chr3R_21760001	RAL-307_100b
3537	chr3R	21761119	21761155	chr3R	21768511	21768563	mdg1	50	7402	13.5	20.5	17.0	2.8	7444	chr3R	21761119	exon	CG42335 +	chr3R	21764841	intron	CG42335 +	chr3R	21768563	exon	CG42335 +	chr3R_50_21760001	chr3R_21760001	RAL-307_100b
3555	chr3R	22239466	22239524	chr3R	22248551	22248597	roo	23	9077	15.5	0.0	7.8	2.6	9131	chr3R	22239466	intron	SKIP +	chr3R	22244032	intron	SKIP +	chr3R	22248597	intron	SKIP +	chr3R_23_22240001	chr3R_22240001	RAL-307_100b
3560	chr3R	22450520	22450575	chr3R	22453185	22453240	NOF	43	2663	15.5	14.0	14.8	2.7	2720	chr3R	22450520	intron	CG34376 +	chr3R	22451880	intron	CG34376 +	chr3R	22453240	intron	CG34376 +	chr3R_43_22450001	chr3R_22450001	RAL-307_100b
3582	chr3R	22881187	22881220	chr3R	22884910	22884951	Doc	17	3727	11.5	12.5	12.0	1.3	3764	chr3R	22881187	intergenic	not near genes	chr3R	22883069	intergenic	not near genes	chr3R	22884951	intergenic	not near genes	chr3R_17_22880001	chr3R_22880001	RAL-307_100b
3606	chr3R	23558374	23558429	chr3R	23560180	23560235	Bari1	42	1804	17.0	10.5	13.8	2.8	1861	chr3R	23558374	intron	beat-IV +	chr3R	23559304	intron	beat-IV +	chr3R	23560235	intron	beat-IV +	chr3R_42_23555001	chr3R_23555001	RAL-307_100b
3609	chr3R	23684670	23684729	chr3R	23685181	23685195	roo	59	502	19.0	22.5	20.8	2.7	525	chr3R	23684670	exon	CG18754 +	chr3R	23684932	intron	CG18754 +	chr3R	23685195	exon	CG18754 +	chr3R_59_23680001	chr3R_23680001	RAL-307_100b
3612	chr3R	23835384	23835433	chr3R	23844559	23844608	roo	37	9172	18.0	7.5	12.8	2.7	9224	chr3R	23835384	intron	CG34355 +	chr3R	23839996	intron	CG34355 +	chr3R	23844608	intron	CG34355 +	chr3R_37_23835001	chr3R_23835001	RAL-307_100b
3613	chr3R	23851062	23851087	chr3R	23858754	23858779	opus	19	7691	11.0	22.0	16.5	1.1	7717	chr3R	23851062	3` UTR	CG34355 +	chr3R	23854920	intergenic	not near genes	chr3R	23858779	intergenic	not near genes	chr3R_19_23850001	chr3R_23850001	RAL-307_100b
3621	chr3R	24072063	24072119	chr3R	24072526	24072540	jockey	52	457	19.5	25.5	22.5	2.2	477	chr3R	24072063	intron	4EHP -	chr3R	24072302	intron	4EHP -	chr3R	24072540	intron	4EHP -	chr3R_52_24070001	chr3R_24070001	RAL-307_100b
3622	chr3R	24076900	24076935	chr3R	24078385	24078427	hobo	24	1485	20.0	19.5	19.8	1.2	1527	chr3R	24076900	intron	4EHP -	chr3R	24077664	intron	4EHP -	chr3R	24078427	intron	4EHP -	chr3R_24_24075001	chr3R_24075001	RAL-307_100b
3623	chr3R	24076936	24076948	chr3R	24078380	24078433	hobo	15	1475	14.5	17.5	16.0	0.9	1497	chr3R	24076936	intron	4EHP -	chr3R	24077684	intron	4EHP -	chr3R	24078433	intron	4EHP -	chr3R_15_24075001	chr3R_24075001	RAL-307_100b
3626	chr3R	24207196	24207206	chr3R	24212297	24212307	flea	7	5100	52.5	22.5	37.5	0.2	5111	chr3R	24207196	intron	twin -	chr3R	24209752	intron	twin -	chr3R	24212307	intron	twin -	chr3R_7_24205001	chr3R_24205001	RAL-307_100b
3627	chr3R	24207207	24207220	chr3R	24212293	24212321	flea	17	5099	46.0	19.0	32.5	0.5	5114	chr3R	24207207	intron	twin -	chr3R	24209764	intron	twin -	chr3R	24212321	intron	twin -	chr3R_17_24205001	chr3R_24205001	RAL-307_100b
3628	chr3R	24207222	24207229	chr3R	24212291	24212330	flea	12	5092	36.5	18.0	27.2	0.4	5108	chr3R	24207222	intron	twin -	chr3R	24209776	intron	twin -	chr3R	24212330	intron	twin -	chr3R_12_24205001	chr3R_24205001	RAL-307_100b
3629	chr3R	24207230	24207244	chr3R	24212290	24212335	flea	14	5091	19.5	17.5	18.5	0.7	5105	chr3R	24207230	intron	twin -	chr3R	24209782	intron	twin -	chr3R	24212335	intron	twin -	chr3R_14_24205001	chr3R_24205001	RAL-307_100b
3635	chr3R	24493255	24493304	chr3R	24493509	24493558	BS	49	250	11.5	19.0	15.2	3.0	303	chr3R	24493255	intergenic	not near genes	chr3R	24493406	intergenic	not near genes	chr3R	24493558	intergenic	not near genes	chr3R_49_24490001	chr3R_24490001	RAL-307_100b
3638	chr3R	24594654	24594668	chr3R	24594919	24594933	pogo	13	265	17.5	22.0	19.8	0.6	279	chr3R	24594654	intron	mld +	chr3R	24594794	intron	mld +	chr3R	24594933	intron	mld +	chr3R_13_24590001	chr3R_24590001	RAL-307_100b
3642	chr3R	24730072	24730098	chr3R	24732475	24732501	Doc	21	2402	26.5	3.5	15.0	1.3	2429	chr3R	24730072	intron	tok +	chr3R	24731286	intron	tok +	chr3R	24732501	intron	tok +	chr3R_21_24730001	chr3R_24730001	RAL-307_100b
3643	chr3R	24730103	24730117	chr3R	24732470	24732470	Doc	8	2378	17.5	3.5	10.5	0.7	2367	chr3R	24730103	intron	tok +	chr3R	24731286	intron	tok +	chr3R	24732470	intron	tok +	chr3R_8_24730001	chr3R_24730001	RAL-307_100b
3651	chr3R	24927115	24927128	chr3R	24931921	24931938	Doc	14	4812	35.5	15.0	25.2	0.5	4823	chr3R	24927115	intergenic	Trf4-2 +	chr3R	24929526	intergenic	not near genes	chr3R	24931938	intergenic	CG11771 +	chr3R_14_24925001	chr3R_24925001	RAL-307_100b
3652	chr3R	24927129	24927151	chr3R	24931919	24931956	Doc	26	4809	23.5	14.5	19.0	1.3	4827	chr3R	24927129	intergenic	Trf4-2 +	chr3R	24929542	intergenic	not near genes	chr3R	24931956	intergenic	CG11771 +	chr3R_26_24925001	chr3R_24925001	RAL-307_100b
3671	chr3R	25725806	25725860	chr3R	25734991	25735039	roo	47	9184	12.5	17.0	14.8	3.0	9233	chr3R	25725806	intron	LpR2 -	chr3R	25730422	intron	LpR2 -	chr3R	25735039	intron	LpR2 -	chr3R_47_25730001	chr3R_25730001	RAL-307_100b
3675	chr3R	25832672	25832678	chr3R	25841879	25841885	roo	6	9207	35.5	23.0	29.2	0.2	9213	chr3R	25832672	exon	alpha4GT2 +	chr3R	25837278	intron	alpha4GT2 +	chr3R	25841885	exon	alpha4GT2 +	chr3R_6_25835001	chr3R_25835001	RAL-307_100b
3676	chr3R	25832684	25832721	chr3R	25841876	25841896	roo	44	9201	15.0	21.0	18.0	2.3	9212	chr3R	25832684	exon	alpha4GT2 +	chr3R	25837290	intron	alpha4GT2 +	chr3R	25841896	exon	alpha4GT2 +	chr3R_44_25835001	chr3R_25835001	RAL-307_100b
3701	chr3R	26376303	26376355	chr3R	26385488	26385524	roo	51	9182	17.5	2.5	10.0	4.6	9221	chr3R	26376303	intergenic	not near genes	chr3R	26380914	intergenic	not near genes	chr3R	26385524	intergenic	not near genes	chr3R_51_26380001	chr3R_26380001	RAL-307_100b
3707	chr3R	26510475	26510523	chr3R	26519561	26519609	roo	16	9081	0.0	11.0	5.5	2.5	9134	chr3R	26510475	intron	plum -	chr3R	26515042	intron	plum -	chr3R	26519609	intron,5` UTR	plum -,CR45226 +	chr3R_16_26515001	chr3R_26515001	RAL-307_100b
3708	chr3R	26558303	26558360	chr3R	26565639	26565686	Stalker4	45	7329	17.0	12.0	14.5	2.9	7383	chr3R	26558303	intron	scrib +	chr3R	26561994	intron	scrib +	chr3R	26565686	intron	scrib +	chr3R_45_26560001	chr3R_26560001	RAL-307_100b
3710	chr3R	26642708	26642762	chr3R	26643126	26643174	jockey	42	415	20.5	17.5	19.0	2.1	466	chr3R	26642708	intergenic	not near genes	chr3R	26642941	intergenic	not near genes	chr3R	26643174	intergenic	not near genes	chr3R_42_26640001	chr3R_26640001	RAL-307_100b
3715	chr3R	26810526	26810586	chr3R	26811036	26811051	roo	37	506	13.0	18.5	15.8	2.2	525	chr3R	26810526	intron	Tl +	chr3R	26810788	intron	Tl +	chr3R	26811051	intron	Tl +	chr3R_37_26810001	chr3R_26810001	RAL-307_100b
3716	chr3R	27007382	27007392	chr3R	27016542	27016547	roo	10	9158	37.5	19.5	28.5	0.3	9165	chr3R	27007382	intron	RYa-R +	chr3R	27011964	intron	RYa-R +	chr3R	27016547	intron	RYa-R +	chr3R_10_27010001	chr3R_27010001	RAL-307_100b
3717	chr3R	27007395	27007437	chr3R	27016541	27016582	roo	33	9148	15.0	18.5	16.8	1.9	9187	chr3R	27007395	intron	RYa-R +	chr3R	27011988	intron	RYa-R +	chr3R	27016582	intron	RYa-R +	chr3R_33_27010001	chr3R_27010001	RAL-307_100b
3727	chr3R	27140489	27140501	chr3R	27148124	27148136	412	12	7633	40.0	15.5	27.8	0.4	7647	chr3R	27140489	intron	CG6051 -	chr3R	27144312	intron	CG6051 -	chr3R	27148136	intron	CG6051 -	chr3R_12_27140001	chr3R_27140001	RAL-307_100b
3728	chr3R	27140503	27140545	chr3R	27148123	27148180	412	51	7632	15.0	15.0	15.0	3.2	7677	chr3R	27140503	intron	CG6051 -	chr3R	27144342	intron	CG6051 -	chr3R	27148180	intron	CG6051 -	chr3R_51_27140001	chr3R_27140001	RAL-307_100b
3737	chr3R	27342771	27342776	chr3R	27351377	27351382	Tirant	8	8606	47.5	18.0	32.8	0.2	8611	chr3R	27342771	intron	CG42534 +	chr3R	27347076	intron	CG42534 +	chr3R	27351382	intron	CG42534 +	chr3R_8_27345001	chr3R_27345001	RAL-307_100b
3738	chr3R	27342777	27342787	chr3R	27351375	27351392	Tirant	8	8602	41.0	17.5	29.2	0.3	8615	chr3R	27342777	intron	CG42534 +	chr3R	27347084	intron	CG42534 +	chr3R	27351392	intron	CG42534 +	chr3R_8_27345001	chr3R_27345001	RAL-307_100b
3739	chr3R	27342789	27342826	chr3R	27351373	27351432	Tirant	35	8602	21.0	16.0	18.5	1.8	8643	chr3R	27342789	intron	CG42534 +	chr3R	27347110	intron	CG42534 +	chr3R	27351432	intron	CG42534 +	chr3R_35_27345001	chr3R_27345001	RAL-307_100b
3748	chr3R	27521143	27521151	chr3R	27530377	27530385	roo	5	9234	23.5	13.5	18.5	0.3	9242	chr3R	27521143	intron	CG12885 +	chr3R	27525764	intron	CG12885 +	chr3R	27530385	intron	CG12885 +	chr3R_5_27525001	chr3R_27525001	RAL-307_100b
3749	chr3R	27521154	27521186	chr3R	27530368	27530390	roo	19	9230	11.0	8.5	9.8	1.8	9236	chr3R	27521154	intron	CG12885 +	chr3R	27525772	intron	CG12885 +	chr3R	27530390	intron	CG12885 +	chr3R_19_27525001	chr3R_27525001	RAL-307_100b
3761	chr3R	27725544	27725590	chr3R	27731011	27731057	I-element	38	5465	22.5	21.5	22.0	1.7	5513	chr3R	27725544	intergenic	not near genes	chr3R	27728300	intergenic	not near genes	chr3R	27731057	intergenic	not near genes	chr3R_38_27725001	chr3R_27725001	RAL-307_100b
3763	chr3R	27791621	27791632	chr3R	27794794	27794807	Rt1c	9	3172	39.0	31.0	35.0	0.2	3186	chr3R	27791621	intron	CG34353 -	chr3R	27793214	intron	CG34353 -	chr3R	27794807	intron	CG34353 -	chr3R_9_27790001	chr3R_27790001	RAL-307_100b
3764	chr3R	27791633	27791647	chr3R	27794792	27794821	Rt1c	25	3171	33.0	30.5	31.8	0.8	3188	chr3R	27791633	intron	CG34353 -	chr3R	27793227	intron	CG34353 -	chr3R	27794821	intron	CG34353 -	chr3R_25_27790001	chr3R_27790001	RAL-307_100b
3767	chr3R	27856735	27856792	chr3R	27858243	27858273	hopper2	52	1505	19.5	19.5	19.5	2.5	1538	chr3R	27856735	intron	CG34353 -	chr3R	27857504	intron	CG34353 -	chr3R	27858273	intron	CG34353 -	chr3R_52_27855001	chr3R_27855001	RAL-307_100b
3768	chr3R	27862931	27862984	chr3R	27868261	27868285	Transpac	40	5322	13.5	20.0	16.8	2.2	5354	chr3R	27862931	intron	CG34353 -	chr3R	27865608	intron	CG34353 -	chr3R	27868285	intron	CG34353 -	chr3R_40_27865001	chr3R_27865001	RAL-307_100b
3769	chr3R	27875674	27875731	chr3R	27882754	27882785	297	50	7074	13.5	18.0	15.8	3.0	7111	chr3R	27875674	intron	CG34353 -	chr3R	27879230	intron	CG34353 -	chr3R	27882785	intron	CG34353 -	chr3R_50_27875001	chr3R_27875001	RAL-307_100b
3773	chr3R	28068476	28068478	chr3R	28073943	28073945	I-element	6	5467	1.0	15.5	8.2	0.7	5469	chr3R	28068476	intron	CG34362 +	chr3R	28071210	intron	CG34362 +	chr3R	28073945	intron	CG34362 +	chr3R_6_28070001	chr3R_28070001	RAL-307_100b
3774	chr3R	28068479	28068524	chr3R	28073941	28073984	I-element	29	5466	1.5	15.5	8.5	3.1	5505	chr3R	28068479	intron	CG34362 +	chr3R	28071232	intron	CG34362 +	chr3R	28073984	intron	CG34362 +	chr3R_29_28070001	chr3R_28070001	RAL-307_100b
3778	chr3R	28173653	28173705	chr3R	28181106	28181149	mdg1	50	7452	7.0	13.5	10.2	4.5	7496	chr3R	28173653	intron	CG34354 +	chr3R	28177401	intron	CG34354 +	chr3R	28181149	intron	CG34354 +	chr3R_50_28175001	chr3R_28175001	RAL-307_100b
3779	chr3R	28253316	28253368	chr3R	28255851	28255903	jockey	46	2529	12.5	23.5	18.0	2.4	2587	chr3R	28253316	intergenic	not near genes	chr3R	28254610	intergenic	not near genes	chr3R	28255903	intergenic	not near genes	chr3R_46_28250001	chr3R_28250001	RAL-307_100b
3781	chr3R	28302081	28302129	chr3R	28302545	28302586	jockey	51	463	16.0	20.0	18.0	2.7	505	chr3R	28302081	intergenic	not near genes	chr3R	28302334	intergenic	not near genes	chr3R	28302586	intergenic	not near genes	chr3R_51_28300001	chr3R_28300001	RAL-307_100b
3795	chr3R	28758267	28758278	chr3R	28763904	28763920	roo	11	5639	37.5	1.0	19.2	0.5	5653	chr3R	28758267	intergenic	aqrs -	chr3R	28761094	intergenic	not near genes	chr3R	28763920	intergenic	not near genes	chr3R_11_28760001	chr3R_28760001	RAL-307_100b
3796	chr3R	28758299	28758307	chr3R	28771330	28771339	Stalker4	7	13032	16.5	5.5	11.0	0.6	13040	chr3R	28758299	intergenic	aqrs -	chr3R	28764819	intergenic	not near genes	chr3R	28771339	intergenic	not near genes	chr3R_7_28760001	chr3R_28760001	RAL-307_100b
3797	chr3R	28758312	28758316	chr3R	28771339	28771348	Stalker4	5	13031	11.5	7.0	9.2	0.5	13036	chr3R	28758312	intergenic	aqrs -	chr3R	28764830	intergenic	not near genes	chr3R	28771348	intergenic	not near genes	chr3R_5_28760001	chr3R_28760001	RAL-307_100b
3798	chr3R	28792862	28792902	chr3R	28797967	28798022	jockey	30	5111	7.0	15.0	11.0	2.5	5160	chr3R	28792862	intergenic	not near genes	chr3R	28795442	intergenic	not near genes	chr3R	28798022	intergenic	not near genes	chr3R_30_28795001	chr3R_28795001	RAL-307_100b
3819	chr3R	29079357	29079363	chr3R	29080753	29080755	NOF	7	1396	44.5	17.0	30.8	0.2	1398	chr3R	29079357	intron	CG11873 +	chr3R	29080056	intron	CG11873 +	chr3R	29080755	intron	CG11873 +	chr3R_7_29080001	chr3R_29080001	RAL-307_100b
3820	chr3R	29079364	29079398	chr3R	29080750	29080795	NOF	35	1394	26.0	15.0	20.5	1.6	1431	chr3R	29079364	intron	CG11873 +	chr3R	29080080	intron	CG11873 +	chr3R	29080795	intron	CG11873 +	chr3R_35_29080001	chr3R_29080001	RAL-307_100b
3821	chr3R	29079401	29079411	chr3R	29080749	29080773	NOF	5	1371	17.0	15.0	16.0	0.3	1372	chr3R	29079401	intron	CG11873 +	chr3R	29080087	intron	CG11873 +	chr3R	29080773	intron	CG11873 +	chr3R_5_29080001	chr3R_29080001	RAL-307_100b
3837	chr3R	29319809	29319813	chr3R	29320153	29320157	jockey	5	344	21.0	18.5	19.8	0.2	348	chr3R	29319809	intergenic	Cnx99A -	chr3R	29319983	intergenic	Cnx99A -	chr3R	29320157	intergenic	not near genes	chr3R_5_29315001	chr3R_29315001	RAL-307_100b
3838	chr3R	29319814	29319839	chr3R	29320151	29320183	jockey	19	342	15.5	18.0	16.8	1.1	369	chr3R	29319814	intergenic	Cnx99A -	chr3R	29319998	intergenic	Cnx99A -	chr3R	29320183	intergenic	not near genes	chr3R_19_29315001	chr3R_29315001	RAL-307_100b
3839	chr3R	29319841	29319853	chr3R	29320148	29320186	jockey	9	337	12.5	16.5	14.5	0.6	345	chr3R	29319841	intergenic	Cnx99A -	chr3R	29320014	intergenic	Cnx99A -	chr3R	29320186	intergenic	not near genes	chr3R_9_29320001	chr3R_29320001	RAL-307_100b
3850	chr3R	29406593	29406644	chr3R	29407904	29407955	jockey	42	1303	19.5	18.5	19.0	2.1	1362	chr3R	29406593	intron	Ptp99A +	chr3R	29407274	intron	Ptp99A +	chr3R	29407955	intron	Ptp99A +	chr3R_42_29405001	chr3R_29405001	RAL-307_100b
3872	chr3R	29738241	29738295	chr3R	29739733	29739765	hobo	59	1490	15.0	16.5	15.8	3.5	1524	chr3R	29738241	intergenic	CG1969 +,CG7598 +	chr3R	29739003	intron	CG1969 +	chr3R	29739765	5` UTR	CG1969 +	chr3R_59_29735001	chr3R_29735001	RAL-307_100b
3876	chr3R	29760338	29760392	chr3R	29761562	29761614	pogo	50	1223	19.0	16.5	17.8	2.7	1276	chr3R	29760338	intergenic	not near genes	chr3R	29760976	intergenic	not near genes	chr3R	29761614	intergenic	not near genes	chr3R_50_29760001	chr3R_29760001	RAL-307_100b
3878	chr3R	29881996	29882004	chr3R	29891178	29891186	roo	13	9182	41.0	22.5	31.8	0.4	9190	chr3R	29881996	intron	CG31038 +	chr3R	29886591	intron	CG31038 +	chr3R	29891186	intron	CG31038 +	chr3R_13_29885001	chr3R_29885001	RAL-307_100b
3879	chr3R	29882005	29882051	chr3R	29891177	29891233	roo	60	9181	13.5	22.5	18.0	3.2	9228	chr3R	29882005	intron	CG31038 +	chr3R	29886619	intron	CG31038 +	chr3R	29891233	intron	CG31038 +	chr3R_60_29885001	chr3R_29885001	RAL-307_100b
3887	chr3R	30084826	30084833	chr3R	30086318	30086325	hobo	12	1491	44.0	17.5	30.8	0.4	1499	chr3R	30084826	intron	sima +	chr3R	30085576	intron	sima +	chr3R	30086325	intron	sima +	chr3R_12_30085001	chr3R_30085001	RAL-307_100b
3888	chr3R	30084835	30084884	chr3R	30086316	30086340	hobo	54	1487	12.0	16.0	14.0	3.6	1505	chr3R	30084835	intron	sima +	chr3R	30085588	intron	sima +	chr3R	30086340	intron	sima +	chr3R_54_30085001	chr3R_30085001	RAL-307_100b
3893	chr3R	30238736	30238794	chr3R	30239925	30239983	1360	51	1185	15.5	17.5	16.5	2.9	1247	chr3R	30238736	intergenic	not near genes	chr3R	30239360	intergenic	not near genes	chr3R	30239983	intergenic	not near genes	chr3R_51_30235001	chr3R_30235001	RAL-307_100b
3901	chr3R	30317325	30317341	chr3R	30324942	30324948	roo	13	7615	1.0	16.5	8.8	1.3	7623	chr3R	30317325	intron	hdc +	chr3R	30321136	intron	hdc +	chr3R	30324948	intron	hdc +	chr3R_13_30320001	chr3R_30320001	RAL-307_100b
3902	chr3R	30317342	30317357	chr3R	30324933	30324974	roo	11	7608	1.0	11.5	6.2	1.5	7632	chr3R	30317342	intron	hdc +	chr3R	30321158	intron	hdc +	chr3R	30324974	intron	hdc +	chr3R_11_30320001	chr3R_30320001	RAL-307_100b
3905	chr3R	30375521	30375560	chr3R	30383169	30383199	412	9	7646	12.0	8.5	10.2	0.8	7678	chr3R	30375521	intergenic	not near genes	chr3R	30379360	intergenic	not near genes	chr3R	30383199	intergenic	not near genes	chr3R_9_30375001	chr3R_30375001	RAL-307_100b
3906	chr3R	30396172	30396220	chr3R	30404482	30404530	roo	48	8308	15.5	13.5	14.5	3.1	8358	chr3R	30396172	intergenic	not near genes	chr3R	30400351	intergenic	not near genes	chr3R	30404530	5` UTR	CR45570 +	chr3R_48_30400001	chr3R_30400001	RAL-307_100b
3915	chr3R	30480457	30480460	chr3R	30482943	30482953	jockey	5	2490	44.5	14.5	29.5	0.2	2496	chr3R	30480457	intron	PH4alphaEFB +	chr3R	30481705	intron	PH4alphaEFB +	chr3R	30482953	intron	PH4alphaEFB +	chr3R_5_30480001	chr3R_30480001	RAL-307_100b
3916	chr3R	30480462	30480511	chr3R	30482940	30482999	jockey	67	2488	9.5	14.5	12.0	5.2	2537	chr3R	30480462	intron	PH4alphaEFB +	chr3R	30481730	intron	PH4alphaEFB +	chr3R	30482999	intron	PH4alphaEFB +	chr3R_67_30480001	chr3R_30480001	RAL-307_100b
3927	chr3R	30679493	30679552	chr3R	30686987	30687046	blood	46	7493	14.0	15.5	14.8	2.9	7553	chr3R	30679493	intergenic	not near genes	chr3R	30683270	intergenic	not near genes	chr3R	30687046	intergenic	not near genes	chr3R_46_30680001	chr3R_30680001	RAL-307_100b
3934	chr3R	30818786	30818846	chr3R	30820376	30820390	1360	48	1587	7.0	15.0	11.0	4.0	1604	chr3R	30818786	intron	cindr +	chr3R	30819588	intron	cindr +	chr3R	30820390	intron	cindr +	chr3R_48_30815001	chr3R_30815001	RAL-307_100b
3946	chr3R	31074211	31074258	chr3R	31081834	31081879	springer	41	7622	19.0	19.0	19.0	2.0	7668	chr3R	31074211	intron	Sox100B +	chr3R	31078045	intron	Sox100B +	chr3R	31081879	intron	Sox100B +	chr3R_41_31075001	chr3R_31075001	RAL-307_100b
3954	chr3R	31279347	31279409	chr3R	31285563	31285607	diver	47	6212	11.0	16.0	13.5	3.2	6260	chr3R	31279347	intergenic	not near genes	chr3R	31282477	intergenic	not near genes	chr3R	31285607	intergenic	not near genes	chr3R_47_31280001	chr3R_31280001	RAL-307_100b
3955	chr3R	31413068	31413081	chr3R	31418293	31418306	copia	10	5225	29.0	2.0	15.5	0.6	5238	chr3R	31413068	intron	Gprk2 +	chr3R	31415687	intron	Gprk2 +	chr3R	31418306	intron	Gprk2 +	chr3R_10_31415001	chr3R_31415001	RAL-307_100b
3956	chr3R	31413084	31413123	chr3R	31418289	31418317	copia	28	5210	10.5	2.0	6.2	3.9	5233	chr3R	31413084	intron	Gprk2 +	chr3R	31415700	intron	Gprk2 +	chr3R	31418317	intron	Gprk2 +	chr3R_28_31415001	chr3R_31415001	RAL-307_100b
3960	chr3R	31691509	31691562	chr3R	31696296	31696353	Doc	58	4788	15.5	21.5	18.5	3.0	4844	chr3R	31691509	intergenic	not near genes	chr3R	31693931	intergenic	not near genes	chr3R	31696353	intergenic	not near genes	chr3R_58_31690001	chr3R_31690001	RAL-307_100b
3971	chr3R	31997969	31998024	chr3R	32005464	32005499	blood	46	7493	8.0	19.0	13.5	3.2	7530	chr3R	31997969	intron	heph -	chr3R	32001734	intron	heph -	chr3R	32005499	intron	heph -	chr3R_46_32000001	chr3R_32000001	RAL-307_100b
3973	chr4	76474	76504	chr4	81942	81972	I-element	22	5467	20.0	16.0	18.0	1.2	5498	chr4	76474	intron	pan +	chr4	79223	intron	pan +	chr4	81972	intron	pan +	chr4_22_75001	chr4_75001	RAL-307_100b
3974	chr4	76505	76515	chr4	81936	81983	I-element	9	5459	17.0	13.5	15.2	0.6	5478	chr4	76505	intron	pan +	chr4	79244	intron	pan +	chr4	81983	intron	pan +	chr4_9_75001	chr4_75001	RAL-307_100b
3977	chr4	319969	320020	chr4	328170	328221	Stalker2	21	8200	5.5	11.5	8.5	2.2	8252	chr4	319969	3` UTR	CG32850 +	chr4	324095	intron	CG32850 +	chr4	328221	3` UTR,3` UTR	CG32850 +,PMCA -	chr4_21_320001	chr4_320001	RAL-307_100b
3979	chr4	671587	671604	chr4	680189	680212	Tirant	19	8607	27.0	18.0	22.5	0.8	8625	chr4	671587	intron	CG11360 +	chr4	675900	intron	CG11360 +	chr4	680212	intron	CG11360 +	chr4_19_675001	chr4_675001	RAL-307_100b
3980	chr4	671605	671606	chr4	680188	680212	Tirant	4	8600	25.5	17.0	21.2	0.2	8607	chr4	671605	intron	CG11360 +	chr4	675908	intron	CG11360 +	chr4	680212	intron	CG11360 +	chr4_4_675001	chr4_675001	RAL-307_100b
3981	chr4	671607	671630	chr4	680186	680238	Tirant	31	8605	14.0	16.0	15.0	1.9	8631	chr4	671607	intron	CG11360 +	chr4	675922	intron	CG11360 +	chr4	680238	intron	CG11360 +	chr4_31_675001	chr4_675001	RAL-307_100b
3987	chrX	295832	295881	chrX	303477	303526	412	44	7643	13.0	12.5	12.8	3.2	7694	chrX	295832	intron	CG3777 +	chrX	299679	intron	CG3777 +	chrX	303526	intron	CG3777 +	chrX_44_295001	chrX_295001	RAL-307_100b
3988	chrX	318448	318503	chrX	323559	323584	flea	36	5108	11.5	13.0	12.2	2.7	5136	chrX	318448	intron,intron	CG3777 +,CG32816 -	chrX	321016	intron,intron	CG3777 +,CG32816 -	chrX	323584	intron,intron	CG3777 +,CG32816 -	chrX_36_320001	chrX_320001	RAL-307_100b
3992	chrX	428396	428401	chrX	434606	434611	3S18	4	6210	41.5	14.5	28.0	0.1	6215	chrX	428396	intron	CG32816 -	chrX	431504	intron	CG32816 -	chrX	434611	intron	CG32816 -	chrX_4_430001	chrX_430001	RAL-307_100b
3993	chrX	428403	428445	chrX	434603	434655	3S18	31	6207	17.5	12.0	14.8	2.0	6252	chrX	428403	intron	CG32816 -	chrX	431529	intron	CG32816 -	chrX	434655	intron	CG32816 -	chrX_31_430001	chrX_430001	RAL-307_100b
3995	chrX	551401	551411	chrX	558988	558998	412	5	7585	36.0	16.0	26.0	0.2	7597	chrX	551401	intron	Appl +	chrX	555200	intron	Appl +	chrX	558998	intron	Appl +	chrX_5_555001	chrX_555001	RAL-307_100b
3996	chrX	551414	551454	chrX	558982	559041	412	36	7578	17.5	14.5	16.0	2.1	7627	chrX	551414	intron	Appl +	chrX	555228	intron	Appl +	chrX	559041	intron	Appl +	chrX_36_555001	chrX_555001	RAL-307_100b
4001	chrX	812246	812255	chrX	817902	817911	297	9	5656	36.0	19.0	27.5	0.3	5665	chrX	812246	intron	CG43867 -	chrX	815078	intron	CG43867 -	chrX	817911	intron	CG43867 -	chrX_9_815001	chrX_815001	RAL-307_100b
4002	chrX	812256	812296	chrX	817897	817951	297	27	5652	16.0	16.5	16.2	1.6	5695	chrX	812256	intron	CG43867 -	chrX	815104	intron	CG43867 -	chrX	817951	intron	CG43867 -	chrX_27_815001	chrX_815001	RAL-307_100b
4003	chrX	827579	827616	chrX	835396	835403	roo	27	7814	28.5	15.0	21.8	1.2	7824	chrX	827579	intron	CG43867 -	chrX	831491	intron	CG43867 -	chrX	835403	intron	CG43867 -	chrX_27_830001	chrX_830001	RAL-307_100b
4004	chrX	827617	827632	chrX	835394	835449	roo	16	7806	20.5	14.0	17.2	0.9	7832	chrX	827617	intron	CG43867 -	chrX	831533	intron	CG43867 -	chrX	835449	intron	CG43867 -	chrX_16_830001	chrX_830001	RAL-307_100b
4006	chrX	906676	906732	chrX	908490	908546	S-element	49	1811	19.5	17.5	18.5	2.5	1870	chrX	906676	intron	CG43867 -	chrX	907611	intron	CG43867 -	chrX	908546	intron	CG43867 -	chrX_49_905001	chrX_905001	RAL-307_100b
4010	chrX	1063738	1063750	chrX	1072556	1072568	roo	12	8817	25.0	14.5	19.8	0.6	8830	chrX	1063738	intron	CR44779 +	chrX	1068153	intron	CR44779 +	chrX	1072568	intron	CR44779 +	chrX_12_1065001	chrX_1065001	RAL-307_100b
4014	chrX	1357757	1357787	chrX	1367952	1367982	Doc	23	10193	29.5	15.0	22.2	1.0	10225	chrX	1357757	intergenic	png -	chrX	1362870	intergenic	not near genes	chrX	1367982	intergenic	not near genes	chrX_23_1360001	chrX_1360001	RAL-307_100b
4015	chrX	1357788	1357806	chrX	1367943	1367981	Doc	15	10190	19.5	13.0	16.2	0.9	10193	chrX	1357788	intergenic	png -	chrX	1362884	intergenic	not near genes	chrX	1367981	intergenic	not near genes	chrX_15_1360001	chrX_1360001	RAL-307_100b
4016	chrX	1518015	1518049	chrX	1523442	1523471	jockey	35	5425	26.5	20.0	23.2	1.4	5456	chrX	1518015	intergenic	inc +	chrX	1520743	intergenic	not near genes	chrX	1523471	intergenic	not near genes	chrX_35_1520001	chrX_1520001	RAL-307_100b
4017	chrX	1518051	1518068	chrX	1523437	1523495	jockey	19	5423	18.0	15.5	16.8	1.1	5444	chrX	1518051	intergenic	inc +	chrX	1520773	intergenic	not near genes	chrX	1523495	intergenic	not near genes	chrX_19_1520001	chrX_1520001	RAL-307_100b
4022	chrX	1627964	1627969	chrX	1635457	1635462	gtwin	5	7493	28.0	24.0	26.0	0.2	7498	chrX	1627964	intron,intron	Mur2B -,br +	chrX	1631713	intron,intron	Mur2B -,br +	chrX	1635462	intron,intron	Mur2B -,br +	chrX_5_1630001	chrX_1630001	RAL-307_100b
4023	chrX	1627970	1627979	chrX	1635445	1635467	gtwin	8	7485	23.0	18.0	20.5	0.4	7497	chrX	1627970	intron,intron	Mur2B -,br +	chrX	1631718	intron,intron	Mur2B -,br +	chrX	1635467	intron,intron	Mur2B -,br +	chrX_8_1630001	chrX_1630001	RAL-307_100b
4024	chrX	1627981	1628006	chrX	1635443	1635459	gtwin	7	7471	9.0	17.5	13.2	0.5	7478	chrX	1627981	intron,intron	Mur2B -,br +	chrX	1631720	intron,intron	Mur2B -,br +	chrX	1635459	intron,intron	Mur2B -,br +	chrX_7_1630001	chrX_1630001	RAL-307_100b
4027	chrX	1930514	1930542	chrX	1938110	1938135	opus	22	7594	12.5	11.0	11.8	1.7	7621	chrX	1930514	3` UTR	CG11596 +	chrX	1934324	intergenic	not near genes	chrX	1938135	3` UTR	CG3857 -	chrX_22_1930001	chrX_1930001	RAL-307_100b
4028	chrX	1930543	1930567	chrX	1938109	1938158	opus	19	7590	7.0	11.0	9.0	1.9	7615	chrX	1930543	intergenic	CG11596 +	chrX	1934350	intergenic	not near genes	chrX	1938158	3` UTR	CG3857 -	chrX_19_1930001	chrX_1930001	RAL-307_100b
4029	chrX	1954862	1954873	chrX	1962826	1962834	Stalker2	6	7964	29.0	8.0	18.5	0.3	7972	chrX	1954862	intron	Hr4 +	chrX	1958848	intron	Hr4 +	chrX	1962834	intron	Hr4 +	chrX_6_1955001	chrX_1955001	RAL-307_100b
4030	chrX	1954876	1954919	chrX	1962824	1962884	Stalker2	23	7947	7.0	8.0	7.5	2.7	8008	chrX	1954876	intron	Hr4 +	chrX	1958880	intron	Hr4 +	chrX	1962884	intron	Hr4 +	chrX_23_1955001	chrX_1955001	RAL-307_100b
4036	chrX	2399819	2399836	chrX	2408191	2408207	roo	17	8374	32.0	17.5	24.8	0.7	8388	chrX	2399819	intergenic	not near genes	chrX	2404013	intergenic	not near genes	chrX	2408207	intergenic	not near genes	chrX_17_2400001	chrX_2400001	RAL-307_100b
4037	chrX	2399837	2399868	chrX	2408189	2408204	roo	28	8364	15.5	15.5	15.5	1.7	8367	chrX	2399837	intergenic	not near genes	chrX	2404020	intergenic	not near genes	chrX	2408204	intergenic	not near genes	chrX_28_2400001	chrX_2400001	RAL-307_100b
4047	chrX	2610365	2610416	chrX	2617504	2617558	HMS-Beagle	12	7141	12.5	10.5	11.5	1.0	7193	chrX	2610365	intergenic	CG8636 -	chrX	2613962	intergenic	not near genes	chrX	2617558	intergenic	Tsp3A -	chrX_12_2610001	chrX_2610001	RAL-307_100b
4051	chrX	2664364	2664377	chrX	2665535	2665548	1360	12	1171	26.5	13.0	19.8	0.6	1184	chrX	2664364	intron	sgg +	chrX	2664956	intron	sgg +	chrX	2665548	intron	sgg +	chrX_12_2660001	chrX_2660001	RAL-307_100b
4052	chrX	2664379	2664396	chrX	2665533	2665567	1360	15	1168	19.0	13.0	16.0	0.9	1188	chrX	2664379	intron	sgg +	chrX	2664973	intron	sgg +	chrX	2665567	intron	sgg +	chrX_15_2660001	chrX_2660001	RAL-307_100b
4053	chrX	2664397	2664416	chrX	2665531	2665560	1360	19	1163	13.5	12.0	12.8	1.4	1163	chrX	2664397	intron	sgg +	chrX	2664978	intron	sgg +	chrX	2665560	intron	sgg +	chrX_19_2660001	chrX_2660001	RAL-307_100b
4054	chrX	2823770	2823779	chrX	2832343	2832348	roo	7	8572	24.5	16.5	20.5	0.3	8578	chrX	2823770	intron	kirre +	chrX	2828059	intron	kirre +	chrX	2832348	intron	kirre +	chrX_7_2825001	chrX_2825001	RAL-307_100b
4055	chrX	2844876	2844930	chrX	2852311	2852365	mdg1	38	7435	8.0	9.5	8.8	3.9	7489	chrX	2844876	intron	kirre +	chrX	2848620	intron	kirre +	chrX	2852365	intron	kirre +	chrX_38_2845001	chrX_2845001	RAL-307_100b
4058	chrX	3058007	3058050	chrX	3058265	3058316	pogo	33	263	7.5	15.0	11.2	2.7	309	chrX	3058007	intron	kirre +	chrX	3058162	intron	kirre +	chrX	3058316	intron	kirre +	chrX_33_3055001	chrX_3055001	RAL-307_100b
4059	chrX	3075609	3075661	chrX	3080941	3080961	Transpac	25	5328	12.5	15.5	14.0	1.7	5352	chrX	3075609	intron	kirre +	chrX	3078285	intron	kirre +	chrX	3080961	intron	kirre +	chrX_25_3075001	chrX_3075001	RAL-307_100b
4061	chrX	3218487	3218538	chrX	3227661	3227712	roo	13	9174	5.0	12.5	8.8	1.3	9225	chrX	3218487	intron	dnc +	chrX	3223100	intron	dnc +	chrX	3227712	intron	dnc +	chrX_13_3220001	chrX_3220001	RAL-307_100b
4069	chrX	3414998	3415043	chrX	3421201	3421253	3S18	28	6205	9.0	6.0	7.5	3.3	6255	chrX	3414998	intron,intron	CR44999 +,CG12535 -	chrX	3418126	intron,intron	CR44999 +,CG12535 -	chrX	3421253	intron,intron	CR44999 +,CG12535 -	chrX_28_3415001	chrX_3415001	RAL-307_100b
4070	chrX	3493064	3493120	chrX	3502248	3502304	roo	38	9183	16.5	7.5	12.0	2.9	9240	chrX	3493064	intron,intron	CR44999 +,Gas8 -	chrX	3497684	intron,intron	CR44999 +,Gas8 -	chrX	3502304	intron,intron	CR44999 +,Gas8 -	chrX_38_3495001	chrX_3495001	RAL-307_100b
4072	chrX	3597525	3597582	chrX	3619718	3619777	roo	30	22189	12.5	10.5	11.5	2.4	22252	chrX	3597525	intron	AstA-R1 +	chrX	3608651	intron	AstA-R1 +	chrX	3619777	intron	AstA-R1 +	chrX_30_3605001	chrX_3605001	RAL-307_100b
4074	chrX	3726743	3726790	chrX	3730165	3730212	NOF	21	3421	10.5	12.5	11.5	1.7	3469	chrX	3726743	intron	tlk +	chrX	3728478	intron	tlk +	chrX	3730212	intron	tlk +	chrX_21_3725001	chrX_3725001	RAL-307_100b
4075	chrX	3752388	3752408	chrX	3764762	3764766	17.6	5	12371	45.5	49.5	47.5	0.1	12378	chrX	3752388	intron	tlk +	chrX	3758577	intron	tlk +	chrX	3764766	intron	tlk +	chrX_5_3755001	chrX_3755001	RAL-307_100b
4077	chrX	3842326	3842353	chrX	3842569	3842596	pogo	18	243	14.5	10.0	12.2	1.4	270	chrX	3842326	intron	ec +	chrX	3842461	intron	ec +	chrX	3842596	intron	ec +	chrX_18_3840001	chrX_3840001	RAL-307_100b
4085	chrX	3986840	3986865	chrX	3994498	3994523	412	20	7655	22.5	13.0	17.8	1.1	7683	chrX	3986840	intergenic	not near genes	chrX	3990682	intergenic	not near genes	chrX	3994523	intergenic	not near genes	chrX_20_3990001	chrX_3990001	RAL-307_100b
4086	chrX	3986866	3986893	chrX	3994496	3994550	412	26	7652	10.5	12.5	11.5	2.1	7684	chrX	3986866	intergenic	not near genes	chrX	3990708	intergenic	not near genes	chrX	3994550	intergenic	not near genes	chrX_26_3990001	chrX_3990001	RAL-307_100b
4090	chrX	4157877	4157890	chrX	4164955	4164960	297	8	7077	22.0	9.0	15.5	0.5	7083	chrX	4157877	intron	Fas2 -	chrX	4161418	intron	Fas2 -	chrX	4164960	intron	Fas2 -	chrX_8_4160001	chrX_4160001	RAL-307_100b
4091	chrX	4157891	4157912	chrX	4164962	4164985	297	13	7075	15.5	10.0	12.8	0.9	7094	chrX	4157891	intron	Fas2 -	chrX	4161438	intron	Fas2 -	chrX	4164985	intron	Fas2 -	chrX_13_4160001	chrX_4160001	RAL-307_100b
4092	chrX	4157914	4157923	chrX	4164956	4165000	297	4	7060	9.5	9.0	9.2	0.4	7086	chrX	4157914	intron	Fas2 -	chrX	4161457	intron	Fas2 -	chrX	4165000	intron	Fas2 -	chrX_4_4160001	chrX_4160001	RAL-307_100b
4105	chrX	4700374	4700384	chrX	4700742	4700752	jockey	7	368	31.0	11.0	21.0	0.3	378	chrX	4700374	3` UTR	ctp +	chrX	4700563	3` UTR	ctp +	chrX	4700752	3` UTR	ctp +	chrX_7_4700001	chrX_4700001	RAL-307_100b
4106	chrX	4700387	4700425	chrX	4700739	4700793	jockey	34	363	15.0	9.5	12.2	2.6	406	chrX	4700387	3` UTR	ctp +	chrX	4700590	3` UTR	ctp +	chrX	4700793	3` UTR	ctp +	chrX_34_4700001	chrX_4700001	RAL-307_100b
4108	chrX	4731792	4731815	chrX	4736907	4736922	jockey	10	5114	24.5	16.0	20.2	0.5	5130	chrX	4731792	intergenic	not near genes	chrX	4734357	intergenic	not near genes	chrX	4736922	intergenic	not near genes	chrX_10_4730001	chrX_4730001	RAL-307_100b
4110	chrX	4763232	4763242	chrX	4763745	4763755	Stalker4	7	513	29.0	16.0	22.5	0.3	523	chrX	4763232	intergenic	not near genes	chrX	4763494	intergenic	not near genes	chrX	4763755	intergenic	not near genes	chrX_7_4760001	chrX_4760001	RAL-307_100b
4111	chrX	4763243	4763284	chrX	4763740	4763784	Stalker4	36	508	16.0	14.0	15.0	2.2	541	chrX	4763243	intergenic	not near genes	chrX	4763514	intergenic	not near genes	chrX	4763784	intergenic	not near genes	chrX_36_4760001	chrX_4760001	RAL-307_100b
4112	chrX	4792355	4792379	chrX	4792813	4792834	jockey	17	457	20.0	17.0	18.5	0.9	479	chrX	4792355	intergenic	not near genes	chrX	4792594	intergenic	not near genes	chrX	4792834	intergenic	not near genes	chrX_17_4790001	chrX_4790001	RAL-307_100b
4113	chrX	4792380	4792410	chrX	4792812	4792822	jockey	21	452	8.0	17.0	12.5	1.6	442	chrX	4792380	intergenic	not near genes	chrX	4792601	intergenic	not near genes	chrX	4792822	intergenic	not near genes	chrX_21_4790001	chrX_4790001	RAL-307_100b
4116	chrX	4827949	4827962	chrX	4835345	4835353	Stalker4	5	7395	33.5	12.5	23.0	0.2	7404	chrX	4827949	intergenic	not near genes	chrX	4831651	intergenic	not near genes	chrX	4835353	intergenic	not near genes	chrX_5_4830001	chrX_4830001	RAL-307_100b
4117	chrX	4827965	4827989	chrX	4835344	4835385	Stalker4	13	7383	17.0	11.5	14.2	0.9	7420	chrX	4827965	intergenic	not near genes	chrX	4831675	intergenic	not near genes	chrX	4835385	intergenic	not near genes	chrX_13_4830001	chrX_4830001	RAL-307_100b
4118	chrX	4827990	4828002	chrX	4835338	4835384	Stalker4	33	7374	14.5	10.5	12.5	2.4	7394	chrX	4827990	intergenic	not near genes	chrX	4831687	intergenic	not near genes	chrX	4835384	intergenic	not near genes	chrX_33_4830001	chrX_4830001	RAL-307_100b
4123	chrX	4990017	4990074	chrX	4997256	4997313	roo	26	7239	9.5	10.5	10.0	2.4	7296	chrX	4990017	intron	CR44833 -	chrX	4993665	intron	CR44833 -	chrX	4997313	intron	CR44833 -	chrX_26_4990001	chrX_4990001	RAL-307_100b
4125	chrX	5096256	5096269	chrX	5103841	5103859	springer	9	7587	27.0	12.0	19.5	0.4	7603	chrX	5096256	intron,intron	CG15465 +,rg +	chrX	5100058	intron,intron	CG15465 +,rg +	chrX	5103859	intron,intron	CG15465 +,rg +	chrX_9_5100001	chrX_5100001	RAL-307_100b
4126	chrX	5096270	5096282	chrX	5103839	5103872	springer	8	7587	22.0	11.0	16.5	0.5	7602	chrX	5096270	intron,intron	CG15465 +,rg +	chrX	5100071	intron,intron	CG15465 +,rg +	chrX	5103872	intron,intron	CG15465 +,rg +	chrX_8_5100001	chrX_5100001	RAL-307_100b
4127	chrX	5096284	5096291	chrX	5103843	5103880	springer	5	7584	20.0	12.5	16.2	0.3	7596	chrX	5096284	intron,intron	CG15465 +,rg +	chrX	5100082	intron,intron	CG15465 +,rg +	chrX	5103880	intron,intron	CG15465 +,rg +	chrX_5_5100001	chrX_5100001	RAL-307_100b
4128	chrX	5096292	5096306	chrX	5103839	5103881	springer	14	7577	10.0	11.0	10.5	1.2	7589	chrX	5096292	intron,intron	CG15465 +,rg +	chrX	5100086	intron,intron	CG15465 +,rg +	chrX	5103881	intron,intron	CG15465 +,rg +	chrX_14_5100001	chrX_5100001	RAL-307_100b
4140	chrX	5338682	5338736	chrX	5339960	5339990	jockey	29	1272	11.5	9.5	10.5	2.5	1308	chrX	5338682	intergenic	not near genes	chrX	5339336	intergenic	not near genes	chrX	5339990	intergenic	SK +	chrX_29_5335001	chrX_5335001	RAL-307_100b
4148	chrX	5524816	5524829	chrX	5528704	5528717	412	6	3887	27.0	3.5	15.2	0.4	3901	chrX	5524816	intergenic	snoRNA:Psi28S-3342 -	chrX	5526766	intergenic	not near genes	chrX	5528717	intergenic	Vsx2 -	chrX_6_5525001	chrX_5525001	RAL-307_100b
4149	chrX	5524830	5524853	chrX	5528702	5528741	412	13	3885	16.5	3.5	10.0	1.2	3911	chrX	5524830	intergenic	snoRNA:Psi28S-3342 -	chrX	5526786	intergenic	not near genes	chrX	5528741	intergenic	Vsx2 -	chrX_13_5525001	chrX_5525001	RAL-307_100b
4150	chrX	5727402	5727415	chrX	5732164	5732179	Doc	12	4762	18.5	11.0	14.8	0.8	4777	chrX	5727402	intron	CG32758 -	chrX	5729790	intron	CG32758 -	chrX	5732179	intron	CG32758 -	chrX_12_5725001	chrX_5725001	RAL-307_100b
4151	chrX	5883783	5883841	chrX	5884049	5884085	pogo	46	265	12.0	12.0	12.0	3.5	302	chrX	5883783	intron	CR45668 -	chrX	5883934	intron	CR45668 -	chrX	5884085	intron	CR45668 -	chrX_46_5880001	chrX_5880001	RAL-307_100b
4152	chrX	5884143	5884193	chrX	5884403	5884418	pogo	36	264	11.0	10.5	10.8	3.1	275	chrX	5884143	intron	CR45668 -	chrX	5884280	intron	CR45668 -	chrX	5884418	intron	CR45668 -	chrX_36_5880001	chrX_5880001	RAL-307_100b
4158	chrX	6171562	6171594	chrX	6179018	6179052	Quasimodo	18	7451	20.0	12.5	16.2	1.0	7490	chrX	6171562	intron	Ca-alpha1T -	chrX	6175307	intron	Ca-alpha1T -	chrX	6179052	intron	Ca-alpha1T -	chrX_18_6175001	chrX_6175001	RAL-307_100b
4159	chrX	6171596	6171605	chrX	6179014	6179063	Quasimodo	6	7448	16.5	11.5	14.0	0.4	7467	chrX	6171596	intron	Ca-alpha1T -	chrX	6175330	intron	Ca-alpha1T -	chrX	6179063	intron	Ca-alpha1T -	chrX_6_6175001	chrX_6175001	RAL-307_100b
4163	chrX	6335213	6335244	chrX	6337723	6337779	Tirant	22	2530	0.0	12.0	6.0	3.1	2566	chrX	6335213	intergenic	not near genes	chrX	6336496	intergenic	not near genes	chrX	6337779	5` UTR	CG3842 +	chrX_22_6335001	chrX_6335001	RAL-307_100b
4164	chrX	6392849	6392867	chrX	6397639	6397657	Doc	13	4788	24.5	2.5	13.5	0.9	4808	chrX	6392849	intergenic	not near genes	chrX	6395253	intergenic	not near genes	chrX	6397657	intergenic	not near genes	chrX_13_6395001	chrX_6395001	RAL-307_100b
4165	chrX	6392868	6392896	chrX	6397635	6397664	Doc	39	4784	11.0	2.5	6.8	5.0	4796	chrX	6392868	intergenic	not near genes	chrX	6395266	intergenic	not near genes	chrX	6397664	intergenic	not near genes	chrX_39_6395001	chrX_6395001	RAL-307_100b
4168	chrX	6562794	6562849	chrX	6571300	6571356	Tirant	63	8502	10.5	15.0	12.8	4.6	8562	chrX	6562794	intron	CG34417 +	chrX	6567075	intron	CG34417 +	chrX	6571356	intron	CG34417 +	chrX_63_6565001	chrX_6565001	RAL-307_100b
4169	chrX	6605458	6605506	chrX	6608505	6608541	Burdock	32	3045	5.0	16.0	10.5	2.8	3083	chrX	6605458	intron	pigs +	chrX	6607000	intron	pigs +	chrX	6608541	intron	pigs +	chrX_32_6605001	chrX_6605001	RAL-307_100b
4188	chrX	7023575	7023631	chrX	7030990	7031016	Tabor	51	7410	14.5	9.5	12.0	3.9	7441	chrX	7023575	intron	CG12541 -	chrX	7027296	intron	CG12541 -	chrX	7031016	intron	CG12541 -	chrX_51_7025001	chrX_7025001	RAL-307_100b
4196	chrX	7125225	7125236	chrX	7134403	7134420	roo	10	9183	2.5	11.0	6.8	1.3	9195	chrX	7125225	intergenic	not near genes	chrX	7129822	intergenic	not near genes	chrX	7134420	intergenic	not near genes	chrX_10_7125001	chrX_7125001	RAL-307_100b
4197	chrX	7125238	7125272	chrX	7134402	7134456	roo	28	9180	2.0	11.0	6.5	3.7	9218	chrX	7125238	intergenic	not near genes	chrX	7129847	intergenic	not near genes	chrX	7134456	intergenic	not near genes	chrX_28_7125001	chrX_7125001	RAL-307_100b
4209	chrX	7702881	7702918	chrX	7703345	7703382	jockey	23	462	24.5	15.0	19.8	1.1	501	chrX	7702881	intron	CHES-1-like -	chrX	7703132	intron	CHES-1-like -	chrX	7703382	intron	CHES-1-like -	chrX_23_7700001	chrX_7700001	RAL-307_100b
4210	chrX	7702920	7702926	chrX	7703343	7703390	jockey	9	453	21.5	14.0	17.8	0.5	470	chrX	7702920	intron	CHES-1-like -	chrX	7703155	intron	CHES-1-like -	chrX	7703390	intron	CHES-1-like -	chrX_9_7700001	chrX_7700001	RAL-307_100b
4212	chrX	7784216	7784223	chrX	7784539	7784545	jockey	5	322	37.5	19.5	28.5	0.2	329	chrX	7784216	intergenic	not near genes	chrX	7784380	intergenic	not near genes	chrX	7784545	intergenic	not near genes	chrX_5_7780001	chrX_7780001	RAL-307_100b
4215	chrX	7845700	7845758	chrX	7847216	7847274	hopper2	43	1514	12.0	14.0	13.0	3.1	1574	chrX	7845700	intergenic	not near genes	chrX	7846487	intergenic	not near genes	chrX	7847274	intergenic	not near genes	chrX_43_7845001	chrX_7845001	RAL-307_100b
4221	chrX	8031402	8031450	chrX	8035736	8035784	Juan	24	4332	15.5	12.5	14.0	1.6	4382	chrX	8031402	intergenic	not near genes	chrX	8033593	intergenic	not near genes	chrX	8035784	3` UTR	CG2233 -	chrX_24_8030001	chrX_8030001	RAL-307_100b
4227	chrX	8364834	8364879	chrX	8365256	8365301	BS	22	420	10.0	21.0	15.5	1.3	467	chrX	8364834	intron	nAChRalpha3 -	chrX	8365068	intron	nAChRalpha3 -	chrX	8365301	intron	nAChRalpha3 -	chrX_22_8365001	chrX_8365001	RAL-307_100b
4242	chrX	8922305	8922360	chrX	8922764	8922819	jockey	42	453	17.5	16.0	16.8	2.4	514	chrX	8922305	intron	rdgA +	chrX	8922562	intron	rdgA +	chrX	8922819	intron	rdgA +	chrX_42_8920001	chrX_8920001	RAL-307_100b
4243	chrX	8948732	8948789	chrX	8956267	8956324	roo	36	7533	4.5	10.5	7.5	4.2	7592	chrX	8948732	intron	rdgA +	chrX	8952528	intron	rdgA +	chrX	8956324	intron	rdgA +	chrX_36_8950001	chrX_8950001	RAL-307_100b
4257	chrX	9508114	9508127	chrX	9509657	9509670	jockey	10	1543	33.5	15.5	24.5	0.4	1556	chrX	9508114	intron	CG32700 -	chrX	9508892	intron	CG32700 -	chrX	9509670	intron	CG32700 -	chrX_10_9505001	chrX_9505001	RAL-307_100b
4258	chrX	9508128	9508161	chrX	9509656	9509704	jockey	25	1539	16.5	15.5	16.0	1.5	1576	chrX	9508128	intron	CG32700 -	chrX	9508916	intron	CG32700 -	chrX	9509704	intron	CG32700 -	chrX_25_9505001	chrX_9505001	RAL-307_100b
4260	chrX	9575768	9575779	chrX	9576117	9576128	mdg3	4	348	40.5	18.0	29.2	0.1	360	chrX	9575768	intron,exon	CG32699 -,CG42395 -	chrX	9575948	intron,intron	CG32699 -,CG42395 -	chrX	9576128	intron,exon	CG32699 -,CG42395 -	chrX_4_9575001	chrX_9575001	RAL-307_100b
4261	chrX	9575780	9575820	chrX	9576113	9576149	mdg3	49	340	17.5	16.0	16.8	2.8	369	chrX	9575780	intron,exon	CG32699 -,CG42395 -	chrX	9575964	intron,intron	CG32699 -,CG42395 -	chrX	9576149	intron,5` UTR	CG32699 -,CG42395 -	chrX_49_9575001	chrX_9575001	RAL-307_100b
4275	chrX	10138191	10138244	chrX	10145720	10145773	412	24	7528	13.0	1.5	7.2	2.9	7582	chrX	10138191	intron,intron	RhoU +,CR44894 -	chrX	10141982	intron,intron	RhoU +,CR44894 -	chrX	10145773	intron,intron	RhoU +,CR44894 -	chrX_24_10140001	chrX_10140001	RAL-307_100b
4279	chrX	10267295	10267333	chrX	10276469	10276508	roo	18	9174	0.5	6.0	3.2	4.3	9213	chrX	10267295	3` UTR	alpha-Man-I -	chrX	10271902	intron	alpha-Man-I -	chrX	10276508	3` UTR	alpha-Man-I -	chrX_18_10270001	chrX_10270001	RAL-307_100b
4286	chrX	10348776	10348832	chrX	10356366	10356386	springer	25	7577	10.5	12.0	11.2	2.0	7610	chrX	10348776	intergenic	snoRNA:U3:9B +	chrX	10352581	intergenic	not near genes	chrX	10356386	intergenic	l(1)G0289 -	chrX_25_10350001	chrX_10350001	RAL-307_100b
4289	chrX	10550831	10550839	chrX	10552323	10552331	hobo	5	1492	25.0	14.5	19.8	0.2	1500	chrX	10550831	intron	spri -	chrX	10551581	intron	spri -	chrX	10552331	intron	spri -	chrX_5_10550001	chrX_10550001	RAL-307_100b
4290	chrX	10550840	10550886	chrX	10552322	10552373	hobo	51	1488	15.5	14.0	14.8	3.2	1533	chrX	10550840	intron	spri -	chrX	10551606	intron	spri -	chrX	10552373	intron	spri -	chrX_51_10550001	chrX_10550001	RAL-307_100b
4291	chrX	10686030	10686084	chrX	10691186	10691246	roo	40	5161	9.5	6.5	8.0	4.4	5216	chrX	10686030	intron	X11Lbeta +	chrX	10688638	intron	X11Lbeta +	chrX	10691246	intron	X11Lbeta +	chrX_40_10685001	chrX_10685001	RAL-307_100b
4292	chrX	10772662	10772694	chrX	10772770	10772790	Tirant	22	102	13.0	8.5	10.8	1.9	128	chrX	10772662	intron	CG15211 +	chrX	10772726	intron	CG15211 +	chrX	10772790	intron	CG15211 +	chrX_22_10770001	chrX_10770001	RAL-307_100b
4297	chrX	11095976	11096017	chrX	11103103	11103144	HMS-Beagle	19	7127	12.0	11.5	11.8	1.5	7168	chrX	11095976	intergenic	not near genes	chrX	11099560	intergenic	not near genes	chrX	11103144	intron	CG42249 +	chrX_19_11095001	chrX_11095001	RAL-307_100b
4300	chrX	11184221	11184279	chrX	11189325	11189380	flea	16	5103	10.0	11.5	10.8	1.4	5159	chrX	11184221	intergenic	not near genes	chrX	11186800	intergenic	not near genes	chrX	11189380	intergenic	not near genes	chrX_16_11185001	chrX_11185001	RAL-307_100b
4302	chrX	11194455	11194461	chrX	11201865	11201867	gypsy5	5	7421	3.0	21.5	12.2	0.4	7412	chrX	11194455	intergenic	not near genes	chrX	11198161	intergenic	not near genes	chrX	11201867	intergenic	CG11106 +	chrX_5_11195001	chrX_11195001	RAL-307_100b
4303	chrX	11268548	11268559	chrX	11270055	11270062	hopper2	10	1515	6.0	12.5	9.2	1.0	1514	chrX	11268548	intron	CG44422 -	chrX	11269305	intron	CG44422 -	chrX	11270062	intron	CG44422 -	chrX_10_11265001	chrX_11265001	RAL-307_100b
4304	chrX	11268560	11268596	chrX	11270053	11270096	hopper2	31	1511	6.0	11.5	8.8	3.2	1536	chrX	11268560	intron	CG44422 -	chrX	11269328	intron	CG44422 -	chrX	11270096	intron	CG44422 -	chrX_31_11265001	chrX_11265001	RAL-307_100b
4305	chrX	11312040	11312079	chrX	11319410	11319457	Stalker2	28	7368	8.0	15.5	11.8	2.2	7417	chrX	11312040	intergenic	not near genes	chrX	11315748	intergenic	not near genes	chrX	11319457	intergenic	not near genes	chrX_28_11315001	chrX_11315001	RAL-307_100b
4306	chrX	11312081	11312088	chrX	11319409	11319451	Stalker2	10	7362	5.5	15.5	10.5	0.9	7370	chrX	11312081	intergenic	not near genes	chrX	11315766	intergenic	not near genes	chrX	11319451	intergenic	not near genes	chrX_10_11315001	chrX_11315001	RAL-307_100b
4308	chrX	11535024	11535046	chrX	11541519	11541541	Burdock	19	6494	25.0	20.0	22.5	0.8	6517	chrX	11535024	intron	Drak +	chrX	11538282	intron	Drak +	chrX	11541541	intron	Drak +	chrX_19_11535001	chrX_11535001	RAL-307_100b
4310	chrX	11633395	11633448	chrX	11640469	11640510	297	41	7075	10.5	12.5	11.5	3.3	7115	chrX	11633395	intron	Ptp10D +	chrX	11636952	intron	Ptp10D +	chrX	11640510	intron	Ptp10D +	chrX_41_11635001	chrX_11635001	RAL-307_100b
4311	chrX	11645084	11645140	chrX	11648278	11648302	NOF	22	3192	10.5	8.5	9.5	2.1	3218	chrX	11645084	intron	Ptp10D +	chrX	11646693	intron	Ptp10D +	chrX	11648302	intron	Ptp10D +	chrX_22_11645001	chrX_11645001	RAL-307_100b
4320	chrX	12168116	12168126	chrX	12173583	12173593	I-element	4	5467	19.5	5.5	12.5	0.3	5477	chrX	12168116	intron	Ten-a +	chrX	12170854	intron	Ten-a +	chrX	12173593	intron	Ten-a +	chrX_4_12170001	chrX_12170001	RAL-307_100b
4321	chrX	12168129	12168166	chrX	12173581	12173583	I-element	21	5462	10.5	5.0	7.8	2.4	5454	chrX	12168129	intron	Ten-a +	chrX	12170856	intron	Ten-a +	chrX	12173583	intron	Ten-a +	chrX_21_12170001	chrX_12170001	RAL-307_100b
4326	chrX	12301931	12301966	chrX	12303262	12303296	X-element	17	1328	7.5	9.0	8.2	1.8	1365	chrX	12301931	intron	Ten-a +	chrX	12302614	intron	Ten-a +	chrX	12303296	intron	Ten-a +	chrX_17_12300001	chrX_12300001	RAL-307_100b
4333	chrX	12381863	12381900	chrX	12385782	12385815	flea	8	3921	8.0	15.0	11.5	0.6	3952	chrX	12381863	intergenic	not near genes	chrX	12383839	intergenic	not near genes	chrX	12385815	intergenic	not near genes	chrX_8_12380001	chrX_12380001	RAL-307_100b
4346	chrX	12930571	12930610	chrX	12937712	12937740	HMS-Beagle	26	7139	7.5	26.5	17.0	1.4	7169	chrX	12930571	intron	fne +	chrX	12934156	intron	fne +	chrX	12937740	intron	fne +	chrX_26_12930001	chrX_12930001	RAL-307_100b
4368	chrX	13401459	13401516	chrX	13401836	13401893	jockey	16	376	8.0	7.5	7.8	1.8	434	chrX	13401459	intergenic	CG1673 +,CG12725 -	chrX	13401676	intergenic	CG12725 -,CG1673 +	chrX	13401893	3` UTR	CG12725 -	chrX_16_13400001	chrX_13400001	RAL-307_100b
4370	chrX	13429469	13429483	chrX	13430638	13430657	jockey	11	1173	0.0	30.0	15.0	0.7	1188	chrX	13429469	intergenic	not near genes	chrX	13430063	intergenic	not near genes	chrX	13430657	intergenic	not near genes	chrX_11_13430001	chrX_13430001	RAL-307_100b
4371	chrX	13429487	13429491	chrX	13430622	13430659	jockey	5	1164	0.0	22.0	11.0	0.4	1172	chrX	13429487	intergenic	not near genes	chrX	13430073	intergenic	not near genes	chrX	13430659	intergenic	not near genes	chrX_5_13430001	chrX_13430001	RAL-307_100b
4375	chrX	13463625	13463676	chrX	13469222	13469278	mdg3	33	5601	10.0	8.5	9.2	3.2	5653	chrX	13463625	intron	Neto +	chrX	13466452	intron	Neto +	chrX	13469278	intron	Neto +	chrX_33_13465001	chrX_13465001	RAL-307_100b
4384	chrX	13937954	13938001	chrX	13941250	13941271	I-element	26	3292	7.5	7.0	7.2	3.2	3317	chrX	13937954	intron	mamo -	chrX	13939612	intron	mamo -	chrX	13941271	intron	mamo -	chrX_26_13935001	chrX_13935001	RAL-307_100b
4387	chrX	14030725	14030778	chrX	14035336	14035374	copia	4	4607	0.0	8.0	4.0	0.8	4649	chrX	14030725	intergenic	not near genes	chrX	14033050	intergenic	not near genes	chrX	14035374	intergenic	not near genes	chrX_4_14030001	chrX_14030001	RAL-307_100b
4388	chrX	14104999	14105049	chrX	14114173	14114225	roo	40	9173	10.5	14.5	12.5	3.0	9226	chrX	14104999	intergenic	not near genes	chrX	14109612	intergenic	not near genes	chrX	14114225	5` UTR	CR44657 +	chrX_40_14105001	chrX_14105001	RAL-307_100b
4392	chrX	14157571	14157602	chrX	14163253	14163269	297	17	5678	15.0	7.0	11.0	1.4	5698	chrX	14157571	intergenic	not near genes	chrX	14160420	intergenic	not near genes	chrX	14163269	intergenic	not near genes	chrX_17_14160001	chrX_14160001	RAL-307_100b
4398	chrX	14416282	14416316	chrX	14421075	14421109	F-element	17	4792	9.0	11.0	10.0	1.5	4827	chrX	14416282	intron	dpr8 +	chrX	14418696	intron	dpr8 +	chrX	14421109	intron	dpr8 +	chrX_17_14415001	chrX_14415001	RAL-307_100b
4403	chrX	14589695	14589707	chrX	14589925	14589951	pogo	5	249	9.0	1.0	5.0	0.8	256	chrX	14589695	intron	CG9413 -	chrX	14589823	intron	CG9413 -	chrX	14589951	intron	CG9413 -	chrX_5_14585001	chrX_14585001	RAL-307_100b
4407	chrX	14636440	14636480	chrX	14641906	14641946	I-element	22	5462	16.5	16.0	16.2	1.3	5506	chrX	14636440	intron	NetA -	chrX	14639193	intron	NetA -	chrX	14641946	intron	NetA -	chrX_22_14635001	chrX_14635001	RAL-307_100b
4408	chrX	14636482	14636489	chrX	14641898	14641954	I-element	10	5451	13.0	12.5	12.8	0.7	5472	chrX	14636482	intron	NetA -	chrX	14639218	intron	NetA -	chrX	14641954	intron	NetA -	chrX_10_14635001	chrX_14635001	RAL-307_100b
4411	chrX	14778014	14778053	chrX	14782836	14782875	Doc	25	4821	17.0	15.0	16.0	1.5	4861	chrX	14778014	intergenic	CG5347 +	chrX	14780444	intergenic	not near genes	chrX	14782875	intergenic	Ag5r2 -	chrX_25_14780001	chrX_14780001	RAL-307_100b
4415	chrX	14818738	14818797	chrX	14823966	14823999	copia	39	5220	12.5	10.5	11.5	3.1	5261	chrX	14818738	intron	rut -	chrX	14821368	intron	rut -	chrX	14823999	intron	rut -	chrX_39_14820001	chrX_14820001	RAL-307_100b
4416	chrX	14936818	14936890	chrX	14946114	14946172	roo	33	9289	0.5	10.0	5.2	5.3	9354	chrX	14936818	intron	pdgy -	chrX	14941495	intron	pdgy -	chrX	14946172	intron	pdgy -	chrX_33_14940001	chrX_14940001	RAL-307_100b
4429	chrX	15273694	15273708	chrX	15274876	15274885	1360	16	1184	43.0	23.5	33.2	0.5	1191	chrX	15273694	intergenic	not near genes	chrX	15274290	intergenic	not near genes	chrX	15274885	intergenic	not near genes	chrX_16_15270001	chrX_15270001	RAL-307_100b
4430	chrX	15273709	15273739	chrX	15274868	15274916	1360	31	1178	21.0	16.5	18.8	1.6	1207	chrX	15273709	intergenic	not near genes	chrX	15274312	intergenic	not near genes	chrX	15274916	intergenic	not near genes	chrX_31_15270001	chrX_15270001	RAL-307_100b
4434	chrX	15413031	15413045	chrX	15417358	15417372	Juan	16	4325	33.0	1.0	17.0	0.9	4341	chrX	15413031	intron	Cngl -	chrX	15415202	intron	Cngl -	chrX	15417372	intron	Cngl -	chrX_16_15415001	chrX_15415001	RAL-307_100b
4435	chrX	15413046	15413082	chrX	15417355	15417358	Juan	25	4316	22.5	1.0	11.8	2.0	4312	chrX	15413046	intron	Cngl -	chrX	15415202	intron	Cngl -	chrX	15417358	intron	Cngl -	chrX_25_15415001	chrX_15415001	RAL-307_100b
4436	chrX	15421905	15421952	chrX	15423431	15423484	pogo	18	1534	6.0	10.0	8.0	2.0	1579	chrX	15421905	intron	Cngl -	chrX	15422694	intron	Cngl -	chrX	15423484	intron	Cngl -	chrX_18_15420001	chrX_15420001	RAL-307_100b
4437	chrX	15435691	15435702	chrX	15436115	15436143	rover	18	452	0.5	14.0	7.2	2.2	452	chrX	15435691	intron	Cngl -	chrX	15435917	intron	Cngl -	chrX	15436143	intron	Cngl -	chrX_18_15435001	chrX_15435001	RAL-307_100b
4455	chrX	16222762	16222807	chrX	16231132	16231182	roo	25	8374	2.5	6.0	4.2	4.8	8420	chrX	16222762	intergenic	not near genes	chrX	16226972	intergenic	not near genes	chrX	16231182	intergenic	not near genes	chrX_25_16225001	chrX_16225001	RAL-307_100b
4456	chrX	16245928	16245962	chrX	16246060	16246094	INE-1	30	131	14.5	3.5	9.0	3.0	166	chrX	16245928	intergenic	not near genes	chrX	16246011	intergenic	not near genes	chrX	16246094	intergenic	not near genes	chrX_30_16245001	chrX_16245001	RAL-307_100b
4461	chrX	16340645	16340696	chrX	16349825	16349878	roo	19	9178	1.5	12.5	7.0	2.4	9233	chrX	16340645	intergenic	Dsp1 +	chrX	16345262	intergenic	not near genes	chrX	16349878	intergenic	sl +	chrX_19_16345001	chrX_16345001	RAL-307_100b
4464	chrX	16492620	16492675	chrX	16498222	16498277	mdg3	56	5600	16.0	12.0	14.0	3.7	5657	chrX	16492620	intron	para -	chrX	16495448	intron	para -	chrX	16498277	exon	para -	chrX_56_16495001	chrX_16495001	RAL-307_100b
4475	chrX	16936001	16936028	chrX	16936424	16936471	jockey	13	440	11.5	14.0	12.8	0.9	470	chrX	16936001	intron	CG4928 +	chrX	16936236	intron	CG4928 +	chrX	16936471	intron	CG4928 +	chrX_13_16935001	chrX_16935001	RAL-307_100b
4481	chrX	17057915	17057963	chrX	17058176	17058229	pogo	12	264	3.0	8.0	5.5	1.8	314	chrX	17057915	intron	CG45002 -	chrX	17058072	intron	CG45002 -	chrX	17058229	intron	CG45002 -	chrX_12_17055001	chrX_17055001	RAL-307_100b
4485	chrX	17195180	17195191	chrX	17200291	17200302	flea	10	5111	34.0	11.0	22.5	0.4	5122	chrX	17195180	3` UTR	baz +	chrX	17197741	3` UTR	baz +	chrX	17200302	3` UTR	baz +	chrX_10_17195001	chrX_17195001	RAL-307_100b
4486	chrX	17195200	17195232	chrX	17200288	17200333	flea	33	5107	14.5	9.5	12.0	2.5	5133	chrX	17195200	3` UTR	baz +	chrX	17197766	3` UTR	baz +	chrX	17200333	3` UTR	baz +	chrX_33_17195001	chrX_17195001	RAL-307_100b
4494	chrX	17431331	17431392	chrX	17431697	17431718	jockey	11	362	10.5	14.0	12.2	0.8	387	chrX	17431331	intron	CG12994 -	chrX	17431524	intron	CG12994 -	chrX	17431718	intron	CG12994 -	chrX_11_17430001	chrX_17430001	RAL-307_100b
4501	chrX	17556920	17556929	chrX	17557444	17557453	mdg1	5	524	36.5	12.5	24.5	0.2	533	chrX	17556920	intron	CG43658 -	chrX	17557186	intron	CG43658 -	chrX	17557453	intron	CG43658 -	chrX_5_17555001	chrX_17555001	RAL-307_100b
4502	chrX	17556930	17556964	chrX	17557442	17557453	mdg1	9	518	20.0	12.5	16.2	0.5	523	chrX	17556930	intron	CG43658 -	chrX	17557192	intron	CG43658 -	chrX	17557453	intron	CG43658 -	chrX_9_17555001	chrX_17555001	RAL-307_100b
4510	chrX	17792934	17792975	chrX	17796255	17796295	flea	25	3321	13.5	13.0	13.2	1.8	3361	chrX	17792934	intron	OdsH +	chrX	17794614	intron	OdsH +	chrX	17796295	intron	OdsH +	chrX_25_17790001	chrX_17790001	RAL-307_100b
4517	chrX	18429469	18429526	chrX	18434804	18434850	Transpac	38	5334	16.0	8.5	12.2	2.9	5381	chrX	18429469	intergenic	not near genes	chrX	18432160	intergenic	not near genes	chrX	18434850	intergenic	not near genes	chrX_38_18430001	chrX_18430001	RAL-307_100b
4523	chrX	18555356	18555407	chrX	18556902	18556954	transib2	29	1544	10.0	12.5	11.2	2.4	1598	chrX	18555356	intron	Bx +	chrX	18556155	intron	Bx +	chrX	18556954	intron	Bx +	chrX_29_18555001	chrX_18555001	RAL-307_100b
4531	chrX	18754311	18754342	chrX	18758003	18758028	297	21	3690	16.0	15.5	15.8	1.2	3717	chrX	18754311	intergenic	not near genes	chrX	18756170	intergenic	not near genes	chrX	18758028	intergenic	not near genes	chrX_21_18755001	chrX_18755001	RAL-307_100b
4535	chrX	18957045	18957100	chrX	18965733	18965773	roo	35	8684	5.0	5.5	5.2	5.6	8728	chrX	18957045	intron	CG43759 +	chrX	18961409	intron	CG43759 +	chrX	18965773	intron	CG43759 +	chrX_35_18960001	chrX_18960001	RAL-307_100b
4541	chrX	19060384	19060431	chrX	19065193	19065232	Doc	35	4806	17.5	19.5	18.5	1.8	4848	chrX	19060384	intron	CG14190 +	chrX	19062808	intron	CG14190 +	chrX	19065232	intron	CG14190 +	chrX_35_19060001	chrX_19060001	RAL-307_100b
4554	chrX	19136535	19136536	chrX	19143474	19143481	412	5	6943	26.5	16.5	21.5	0.2	6946	chrX	19136535	intergenic	not near genes	chrX	19140008	intergenic	not near genes	chrX	19143481	3` UTR	RhoGAP18B -	chrX_5_19140001	chrX_19140001	RAL-307_100b
4555	chrX	19136538	19136582	chrX	19143473	19143526	412	28	6938	10.0	15.0	12.5	2.1	6988	chrX	19136538	intergenic	not near genes	chrX	19140032	intergenic	not near genes	chrX	19143526	3` UTR	RhoGAP18B -	chrX_28_19140001	chrX_19140001	RAL-307_100b
4561	chrX	19356973	19357023	chrX	19358429	19358507	NOF	27	1470	7.5	0.5	4.0	5.4	1534	chrX	19356973	intron	kek5 +	chrX	19357740	intron	kek5 +	chrX	19358507	intron	kek5 +	chrX_27_19355001	chrX_19355001	RAL-307_100b
4562	chrX	19380134	19380186	chrX	19380400	19380452	pogo	31	265	16.5	12.5	14.5	2.0	318	chrX	19380134	intron	kek5 +	chrX	19380293	intron	kek5 +	chrX	19380452	intron	kek5 +	chrX_31_19380001	chrX_19380001	RAL-307_100b
4567	chrX	19472105	19472130	chrX	19472700	19472719	jockey	17	591	28.0	14.0	21.0	0.8	614	chrX	19472105	intergenic	kek5 +	chrX	19472412	intergenic	kek5 +	chrX	19472719	intergenic	not near genes	chrX_17_19470001	chrX_19470001	RAL-307_100b
4568	chrX	19472139	19472154	chrX	19472689	19472746	jockey	15	571	17.0	11.0	14.0	1.0	607	chrX	19472139	intergenic	kek5 +	chrX	19472442	intergenic	not near genes	chrX	19472746	intergenic	not near genes	chrX_15_19470001	chrX_19470001	RAL-307_100b
4579	chrX	19710052	19710104	chrX	19711858	19711872	S-element	45	1803	13.0	16.0	14.5	2.9	1820	chrX	19710052	intron	meso18E -	chrX	19710962	intron	meso18E -	chrX	19711872	intron	meso18E -	chrX_45_19710001	chrX_19710001	RAL-307_100b
4584	chrX	19797331	19797340	chrX	19804663	19804678	Stalker4	9	7337	40.0	14.5	27.2	0.3	7347	chrX	19797331	intergenic	not near genes	chrX	19801004	intergenic	not near genes	chrX	19804678	intergenic	not near genes	chrX_9_19800001	chrX_19800001	RAL-307_100b
4610	chrX	20377326	20377331	chrX	20378818	20378823	hobo	5	1492	26.5	41.5	34.0	0.1	1497	chrX	20377326	intergenic	not near genes	chrX	20378074	intergenic	not near genes	chrX	20378823	intergenic	not near genes	chrX_5_20375001	chrX_20375001	RAL-307_100b
4611	chrX	20377332	20377339	chrX	20378813	20378829	hobo	11	1488	25.0	36.5	30.8	0.3	1497	chrX	20377332	intergenic	not near genes	chrX	20378080	intergenic	not near genes	chrX	20378829	intergenic	not near genes	chrX_11_20375001	chrX_20375001	RAL-307_100b
4612	chrX	20377340	20377343	chrX	20378812	20378815	hobo	4	1482	22.5	35.0	28.8	0.1	1475	chrX	20377340	intergenic	not near genes	chrX	20378078	intergenic	not near genes	chrX	20378815	intergenic	not near genes	chrX_4_20375001	chrX_20375001	RAL-307_100b
4629	chrX	20836739	20836758	chrX	20844349	20844385	roo	23	7624	1.5	18.5	10.0	2.1	7646	chrX	20836739	intron	shakB -	chrX	20840562	intron	shakB -	chrX	20844385	intron	shakB -	chrX_23_20840001	chrX_20840001	RAL-307_100b
4634	chrX	20940705	20940738	chrX	20942189	20942226	hobo	32	1491	24.0	8.0	16.0	1.9	1521	chrX	20940705	intergenic	not near genes	chrX	20941466	intergenic	not near genes	chrX	20942226	intergenic	not near genes	chrX_32_20940001	chrX_20940001	RAL-307_100b
4635	chrX	20940741	20940753	chrX	20942188	20942207	hobo	6	1461	16.5	7.5	12.0	0.5	1466	chrX	20940741	intergenic	not near genes	chrX	20941474	intergenic	not near genes	chrX	20942207	intergenic	not near genes	chrX_6_20940001	chrX_20940001	RAL-307_100b
4638	chrX	20956980	20957013	chrX	20962427	20962455	I-element	13	5458	3.5	9.5	6.5	1.7	5475	chrX	20956980	intergenic	not near genes	chrX	20959718	intergenic	not near genes	chrX	20962455	intergenic	Ser6 -	chrX_13_20955001	chrX_20955001	RAL-307_100b
4642	chrX	21061841	21061891	chrX	21062351	21062401	roo	28	508	11.0	8.0	9.5	2.7	560	chrX	21061841	intron	bves +	chrX	21062121	intron	bves +	chrX	21062401	intron,3` UTR	bves +,CG32512 -	chrX_28_21060001	chrX_21060001	RAL-307_100b
4644	chrX	21086109	21086161	chrX	21087157	21087205	jockey	39	1052	13.0	13.0	13.0	2.8	1096	chrX	21086109	intergenic	not near genes	chrX	21086657	intergenic	not near genes	chrX	21087205	intergenic	not near genes	chrX_39_21085001	chrX_21085001	RAL-307_100b
4654	chrX	21458691	21458694	chrX	21464152	21464155	Ivk	6	5461	21.0	12.5	16.8	0.3	5464	chrX	21458691	intergenic	not near genes	chrX	21461423	intergenic	not near genes	chrX	21464155	intergenic	not near genes	chrX_6_21460001	chrX_21460001	RAL-307_100b
4655	chrX	21458695	21458727	chrX	21464149	21464184	Ivk	36	5458	5.5	12.5	9.0	3.6	5489	chrX	21458695	intergenic	not near genes	chrX	21461440	intergenic	not near genes	chrX	21464184	intergenic	not near genes	chrX_36_21460001	chrX_21460001	RAL-307_100b
4656	chrX	21474383	21474397	chrX	21474774	21474788	1731	11	391	29.0	15.0	22.0	0.5	405	chrX	21474383	intergenic	not near genes	chrX	21474586	intergenic	not near genes	chrX	21474788	intergenic	not near genes	chrX_11_21470001	chrX_21470001	RAL-307_100b
4657	chrX	21474398	21474432	chrX	21474772	21474823	1731	21	388	13.5	14.0	13.8	1.4	425	chrX	21474398	intergenic	not near genes	chrX	21474610	intergenic	not near genes	chrX	21474823	intergenic	not near genes	chrX_21_21470001	chrX_21470001	RAL-307_100b
4664	chrX	21595566	21595574	chrX	21598645	21598653	micropia	5	3079	28.0	30.0	29.0	0.2	3087	chrX	21595566	intergenic	not near genes	chrX	21597110	intergenic	not near genes	chrX	21598653	intergenic	not near genes	chrX_5_21595001	chrX_21595001	RAL-307_100b
4671	chrX	22522612	22522644	chrX	22525457	22525472	NOF	5	2841	18.5	7.5	13.0	0.4	2860	chrX	22522612	intron	CG17600 +	chrX	22524042	intron	CG17600 +	chrX	22525472	intron	CG17600 +	chrX_5_22520001	chrX_22520001	RAL-307_100b
4672	chrX	22564561	22564583	chrX	22575115	22575146	jockey	19	10551	46.0	31.5	38.8	0.5	10585	chrX	22564561	intergenic	not near genes	chrX	22569854	intergenic	not near genes	chrX	22575146	intergenic	not near genes	chrX_19_22565001	chrX_22565001	RAL-307_100b
4679	chrX	22697476	22697505	chrX	22701798	22701827	Juan	24	4321	27.0	25.5	26.2	0.9	4351	chrX	22697476	intron	CR44997 +	chrX	22699652	intron	CR44997 +	chrX	22701827	intron	CR44997 +	chrX_24_22695001	chrX_22695001	RAL-307_100b
4680	chrX	22697506	22697516	chrX	22701789	22701838	Juan	13	4317	21.0	19.0	20.0	0.6	4332	chrX	22697506	intron	CR44997 +	chrX	22699672	intron	CR44997 +	chrX	22701838	intron	CR44997 +	chrX_13_22695001	chrX_22695001	RAL-307_100b
4682	chrX	22771488	22771530	chrX	22774796	22774829	297	22	3306	13.5	10.0	11.8	1.7	3341	chrX	22771488	intron	CR44997 +	chrX	22773158	intron	CR44997 +	chrX	22774829	intron	CR44997 +	chrX_22_22770001	chrX_22770001	RAL-307_100b
4684	chrX	22811974	22811979	chrX	22816771	22816776	F-element	4	4797	31.5	18.0	24.8	0.2	4802	chrX	22811974	intergenic	CG12446 -	chrX	22814375	intergenic	not near genes	chrX	22816776	intergenic	not near genes	chrX_4_22810001	chrX_22810001	RAL-307_100b
4685	chrX	22811981	22812005	chrX	22816768	22816802	F-element	22	4795	22.5	17.0	19.8	1.1	4821	chrX	22811981	intergenic	CG12446 -	chrX	22814392	intergenic	not near genes	chrX	22816802	intergenic	not near genes	chrX_22_22810001	chrX_22810001	RAL-307_100b
4692	chrX	22967365	22967389	chrX	23154541	23154559	diver	6	187175	22.0	38.5	30.2	0.2	187194	chrX	22967365	intergenic	not near genes	chrX	23060962	intergenic	not near genes	chrX	23154559	intergenic	not near genes	chrX_6_23060001	chrX_23060001	RAL-307_100b
4693	chrX	22987080	22987132	chrX	22989764	22989816	Burdock	35	2682	8.0	4.0	6.0	5.0	2736	chrX	22987080	intron,intron	stnA -,stnB -	chrX	22988448	intron,intron	stnA -,stnB -	chrX	22989816	intron,intron	stnA -,stnB -	chrX_35_22985001	chrX_22985001	RAL-307_100b
4695	chrX	22996289	22996341	chrX	23003546	23003567	roo	34	7255	7.0	14.0	10.5	3.0	7278	chrX	22996289	intron,intron	stnA -,stnB -	chrX	22999928	intron,intron	stnA -,stnB -	chrX	23003567	intron,intron	stnA -,stnB -	chrX_34_22995001	chrX_22995001	RAL-307_100b
4696	chrX	23036359	23036413	chrX	23037785	23037839	pogo	40	1425	11.0	10.5	10.8	3.4	1480	chrX	23036359	intron	CG12061 +	chrX	23037099	intron	CG12061 +	chrX	23037839	intron	CG12061 +	chrX_40_23035001	chrX_23035001	RAL-307_100b
4698	chrX	23053476	23053477	chrX	23062409	23062421	diver	4	8941	9.0	15.0	12.0	0.3	8945	chrX	23053476	intergenic	not near genes	chrX	23057948	intergenic	not near genes	chrX	23062421	intergenic	not near genes	chrX_4_23055001	chrX_23055001	RAL-307_100b
4699	chrX	22967488	22967503	chrX	23154542	23154553	diver	6	187052	7.5	38.5	23.0	0.2	187065	chrX	22967488	intergenic	not near genes	chrX	23061020	intergenic	not near genes	chrX	23154553	intergenic	not near genes	chrX_6_23060001	chrX_23060001	RAL-307_100b
4700	chrX	22967482	22967506	chrX	23154554	23154556	diver	6	187056	7.5	38.5	23.0	0.2	187074	chrX	22967482	intergenic	not near genes	chrX	23061019	intergenic	not near genes	chrX	23154556	intergenic	not near genes	chrX_6_23060001	chrX_23060001	RAL-307_100b
4705	chrY	1431372	1431373	chrY	1447397	1447434	Doc	4	16048	17.0	26.5	21.8	0.2	16062	chrY	1431372	intergenic	not near genes	chrY	1439403	intergenic	not near genes	chrY	1447434	intergenic	not near genes	chrY_4_1435001	chrY_1435001	RAL-307_100b