SV# Chr Chr_coord_5p Chr_coord_3p TE TE_coord_start TE_coord_end Reads_collapsed Chr_Coord_Dist Symmetry avg_blat_score Norm_RefGen_Reads Coverage_Ratio classification comments insert_code loci_code Sym_score libname 1 chr2L 451217 451249 FB 32 1 11 32 '5-6 65.46 2.2 3.4 intron crq - chr2L_11_450001 chr2L_450001 0.45 RAL-304_75b 2 chr2L 1098174 1098244 Max-element 9 8534 11 70 '2-9 61.50 1.0 5.5 intron CG4629 - chr2L_11_1095001 chr2L_1095001 0.18 RAL-304_75b 3 chr2L 1249550 1249574 Transpac 5225 5201 12 24 '5-7 67.18 2.6 3.3 intergenic not near genes chr2L_12_1245001 chr2L_1245001 0.42 RAL-304_75b 4 chr2L 1699193 1699251 roo 9068 13 14 58 '6-8 71.11 1.3 6.1 3` UTR chinmo + chr2L_14_1695001 chr2L_1695001 0.43 RAL-304_75b 5 chr2L 2304362 2304439 roo 411 8667 14 77 '10-4 68.95 4.0 2.8 intergenic not near genes chr2L_14_2300001 chr2L_2300001 0.71 RAL-304_75b 6 chr2L 2620103 2620127 blood 7016 7040 4 24 '3-1 65.20 5.4 0.6 intergenic CG43403 + chr2L_4_2620001 chr2L_2620001 0.75 RAL-304_75b 7 chr2L 2621559 2621575 BS 5061 5045 7 16 '4-3 55.72 1.9 2.4 intergenic not near genes chr2L_7_2620001 chr2L_2620001 0.57 RAL-304_75b 8 chr2L 3079259 3079275 FB 19 3 6 16 '3-3 61.70 1.9 2.1 intron toc - chr2L_6_3075001 chr2L_3075001 0.50 RAL-304_75b 9 chr2L 3198579 3198647 blood 379 7026 12 68 '8-4 62.50 2.6 3.3 intron CG34393 - chr2L_12_3195001 chr2L_3195001 0.67 RAL-304_75b 10 chr2L 3839312 3839375 copia 254 4882 10 63 '4-6 64.82 0.9 5.3 intergenic slp2 + chr2L_10_3835001 chr2L_3835001 0.40 RAL-304_75b 11 chr2L 4141831 4141892 flea 4996 4757 8 61 '1-7 65.79 1.4 3.3 intergenic not near genes chr2L_8_4140001 chr2L_4140001 0.12 RAL-304_75b 12 chr2L 4291919 4291960 Max-element 268 7 4 41 '3-1 70.31 4.7 0.7 intron tutl + chr2L_4_4290001 chr2L_4290001 0.75 RAL-304_75b 13 chr2L 4612120 4612173 roo 396 8678 5 53 '2-3 58.01 1.2 2.3 intron dp - chr2L_5_4610001 chr2L_4610001 0.40 RAL-304_75b 14 chr2L 4712513 4712587 Stalker2 398 7250 7 74 '4-3 68.00 1.1 3.3 intron CG34351 + chr2L_7_4710001 chr2L_4710001 0.57 RAL-304_75b 15 chr2L 4719438 4719508 roo 5 9067 13 70 '5-8 64.19 4.2 2.5 intron CG34351 + chr2L_13_4715001 chr2L_4715001 0.38 RAL-304_75b 16 chr2L 4856689 4856736 Tabor 7 459 6 47 '5-1 61.02 1.1 2.9 intron pog + chr2L_6_4855001 chr2L_4855001 0.83 RAL-304_75b 17 chr2L 5027658 5027704 P-element 2860 2886 6 46 '4-2 39.98 5.2 1.0 intron vkg - chr2L_6_5025001 chr2L_5025001 0.67 RAL-304_75b 18 chr2L 5930387 5930458 blood 7012 368 7 71 '3-4 63.08 1.9 2.4 intron dsf + chr2L_7_5930001 chr2L_5930001 0.43 RAL-304_75b 19 chr2L 6280273 6280349 hobo 2938 1 9 76 '4-5 68.04 1.7 3.3 intron Ddr + chr2L_9_6280001 chr2L_6280001 0.44 RAL-304_75b 20 chr2L 6294592 6294655 hobo 8 2933 9 63 '6-3 66.55 1.9 3.1 intron Ddr + chr2L_9_6290001 chr2L_6290001 0.67 RAL-304_75b 21 chr2L 6502488 6502556 pogo 2087 2 13 68 '3-10 64.46 2.5 3.7 intron CG31637 + chr2L_13_6500001 chr2L_6500001 0.23 RAL-304_75b 22 chr2L 6898508 6898570 roo 4 394 6 62 '5-1 63.18 1.4 2.5 intron Nlg2 + chr2L_6_6895001 chr2L_6895001 0.83 RAL-304_75b 23 chr2L 7941700 7941761 roo 8666 391 7 61 '5-2 64.57 2.9 1.8 intron Snoo - chr2L_7_7940001 chr2L_7940001 0.71 RAL-304_75b 24 chr2L 9010446 9010509 1360 15 3388 5 63 '3-2 72.80 2.4 1.5 intergenic CG9568 + chr2L_5_9010001 chr2L_9010001 0.60 RAL-304_75b 25 chr2L 11186143 11186232 412 4 493 12 89 '10-2 66.87 2.4 3.5 intron Ca-beta - chr2L_12_11185001 chr2L_11185001 0.83 RAL-304_75b 26 chr2L 11297949 11297973 jockey 4702 4678 5 24 '1-4 61.66 4.1 1.0 intergenic not near genes chr2L_5_11295001 chr2L_11295001 0.20 RAL-304_75b 27 chr2L 11711287 11711338 roo 9046 3 9 51 '2-7 63.90 2.2 2.8 intergenic not near genes chr2L_9_11710001 chr2L_11710001 0.22 RAL-304_75b 28 chr2L 11887015 11887082 I-element 9 5347 6 67 '5-1 62.89 3.2 1.4 intron Pde1c - chr2L_6_11885001 chr2L_11885001 0.83 RAL-304_75b 29 chr2L 11895541 11895604 roo 8662 389 4 63 '1-3 69.81 2.4 1.2 intron Pde1c - chr2L_4_11895001 chr2L_11895001 0.25 RAL-304_75b 30 chr2L 12455124 12455141 jockey 4787 4771 7 17 '4-3 61.39 0.0 7.0 intergenic bun - chr2L_7_12455001 chr2L_12455001 0.57 RAL-304_75b 31 chr2L 13052080 13052107 jockey 8 35 4 27 '2-2 70.67 4.8 0.7 intron CG9932 - chr2L_4_13050001 chr2L_13050001 0.50 RAL-304_75b 32 chr2L 13259613 13259636 springer 6 28 14 23 '10-4 60.06 2.6 3.9 exon CG31730 - chr2L_14_13255001 chr2L_13255001 0.71 RAL-304_75b 33 chr2L 13323124 13323199 Max-element 8235 297 24 75 '8-16 64.91 1.5 9.6 intron CG43778 - chr2L_24_13320001 chr2L_13320001 0.33 RAL-304_75b 34 chr2L 13731742 13731767 hopper 1407 33 9 25 '6-3 55.93 2.5 2.6 intergenic not near genes chr2L_9_13730001 chr2L_13730001 0.67 RAL-304_75b 35 chr2L 14008827 14008849 Doc 4665 4688 7 22 '5-2 67.75 3.7 1.5 intergenic CG42692 + chr2L_7_14005001 chr2L_14005001 0.71 RAL-304_75b 36 chr2L 14300944 14300990 P-element 27 4 7 46 '3-4 53.34 1.1 3.3 intron wb + chr2L_7_14300001 chr2L_14300001 0.43 RAL-304_75b 37 chr2L 15197840 15197904 hobo 6 2931 10 64 '4-6 63.85 1.0 5.0 intron CG4168 - chr2L_10_15195001 chr2L_15195001 0.40 RAL-304_75b 38 chr2L 15894684 15894729 hobo 14 2920 8 45 '5-3 63.86 4.2 1.5 intergenic not near genes chr2L_8_15890001 chr2L_15890001 0.62 RAL-304_75b 39 chr2L 15895323 15895406 297 6581 394 4 83 '1-3 62.66 1.6 1.5 intergenic CG31735 + chr2L_4_15895001 chr2L_15895001 0.25 RAL-304_75b 40 chr2L 16613735 16613781 hobo 22 2932 6 46 '2-4 56.51 1.7 2.2 intron CG42389 + chr2L_6_16610001 chr2L_16610001 0.33 RAL-304_75b 41 chr2L 17156638 17156678 mdg3 233 5280 9 40 '7-2 56.02 2.4 2.6 intron,intron CG34106 +,beat-IIIa + chr2L_9_17155001 chr2L_17155001 0.78 RAL-304_75b 42 chr2L 17233838 17233906 hobo 4 2935 14 68 '5-9 63.93 1.8 5.0 intron beat-IIIc - chr2L_14_17230001 chr2L_17230001 0.36 RAL-304_75b 43 chr2L 17490771 17490849 roo 9071 8666 12 78 '4-8 62.01 1.0 6.0 intron qua - chr2L_12_17490001 chr2L_17490001 0.33 RAL-304_75b 44 chr2L 20375864 20375930 roo 408 14 4 66 '1-3 64.00 1.0 2.0 intergenic not near genes chr2L_4_20375001 chr2L_20375001 0.25 RAL-304_75b 45 chr2L 20494991 20495056 412 497 20 7 65 '5-2 69.29 1.4 2.9 intergenic CG34007 + chr2L_7_20490001 chr2L_20490001 0.71 RAL-304_75b 46 chr2L 20549215 20549251 roo 9039 12 6 36 '1-5 60.45 0.8 3.3 intergenic not near genes chr2L_6_20545001 chr2L_20545001 0.17 RAL-304_75b 47 chr2L 20888359 20888406 Tirant 8112 8474 4 47 '2-2 72.23 1.5 1.6 intron,intron CG43739 -,sky - chr2L_4_20885001 chr2L_20885001 0.50 RAL-304_75b 48 chr2L 20922893 20922949 P-element 9 9 13 56 '6-7 49.58 4.4 2.4 intergenic Mtp - chr2L_13_20920001 chr2L_20920001 0.46 RAL-304_75b 49 chr2L 21130393 21130466 1360 3 3388 10 73 '5-5 67.87 2.8 2.6 intron Nhe2 + chr2L_10_21130001 chr2L_21130001 0.50 RAL-304_75b 50 chr2L 21781787 21781826 I-element 5320 2 10 39 '1-9 62.87 0.0 10.0 intron CG31612 - chr2L_10_21780001 chr2L_21780001 0.10 RAL-304_75b 51 chr2L 22255223 22255288 Stalker2 7256 7646 10 65 '5-5 58.02 0.3 7.7 intron Tif-IA + chr2L_10_22255001 chr2L_22255001 0.50 RAL-304_75b 52 chr2L 22391421 22391488 roo 8670 404 12 67 '7-5 68.26 6.8 1.5 intergenic not near genes chr2L_12_22390001 chr2L_22390001 0.58 RAL-304_75b 53 chr2L 23310136 23310185 1360 23 3383 11 49 '3-8 65.03 4.0 2.2 intergenic not near genes chr2L_11_23310001 chr2L_23310001 0.27 RAL-304_75b 54 chr2R 330153 330192 HMS-Beagle2 285 14 6 39 '4-2 67.77 1.2 2.7 intergenic not near genes chr2R_6_330001 chr2R_330001 0.67 RAL-304_75b 55 chr2R 503087 503112 gypsy 2 22 6 25 '1-5 65.36 4.7 1.1 intron CG40378 + chr2R_6_500001 chr2R_500001 0.17 RAL-304_75b 56 chr2R 929216 929283 Transpac 4933 309 9 67 '1-8 60.09 0.7 5.3 5` UTR CG40498 - chr2R_9_925001 chr2R_925001 0.11 RAL-304_75b 57 chr2R 977622 977645 Transpac 4920 4943 8 23 '1-7 67.50 2.3 2.4 intergenic not near genes chr2R_8_975001 chr2R_975001 0.12 RAL-304_75b 58 chr2R 4597898 4597957 copia 258 24 5 59 '2-3 69.15 0.9 2.6 intron p120ctn + chr2R_5_4595001 chr2R_4595001 0.40 RAL-304_75b 59 chr2R 5179587 5179662 1360 3386 1 15 75 '7-8 70.15 1.4 6.2 intron Nipped-A - chr2R_15_5175001 chr2R_5175001 0.47 RAL-304_75b 60 chr2R 5266852 5266918 copia 4 245 8 66 '7-1 60.15 10.6 0.7 intron d4 + chr2R_8_5265001 chr2R_5265001 0.88 RAL-304_75b 61 chr2R 5468066 5468137 copia 4875 253 13 71 '6-7 60.39 2.6 3.6 intergenic CG30440 - chr2R_13_5465001 chr2R_5465001 0.46 RAL-304_75b 62 chr2R 7839138 7839186 copia 20 247 4 48 '1-3 57.77 1.9 1.4 intron Dgk - chr2R_4_7835001 chr2R_7835001 0.25 RAL-304_75b 63 chr2R 8320215 8320279 412 490 14 12 64 '9-3 63.50 1.2 5.5 intergenic not near genes chr2R_12_8320001 chr2R_8320001 0.75 RAL-304_75b 64 chr2R 8527827 8527898 R1A1-element 4894 5326 11 71 '6-5 61.22 3.2 2.6 intron mtt - chr2R_11_8525001 chr2R_8525001 0.55 RAL-304_75b 65 chr2R 9408178 9408227 FB 4 23 10 49 '7-3 63.76 3.3 2.3 intron wun - chr2R_10_9405001 chr2R_9405001 0.70 RAL-304_75b 66 chr2R 9440616 9440659 pogo 16 2076 6 43 '4-2 67.11 4.1 1.2 intron ced-6 - chr2R_6_9440001 chr2R_9440001 0.67 RAL-304_75b 67 chr2R 9669559 9669594 FB 21 21 6 35 '1-5 65.88 2.8 1.6 intron Mmp2 - chr2R_6_9665001 chr2R_9665001 0.17 RAL-304_75b 68 chr2R 9870727 9870796 S-element 1703 2 4 69 '3-1 74.00 0.8 2.2 intron cbx - chr2R_4_9870001 chr2R_9870001 0.75 RAL-304_75b 69 chr2R 9871575 9871648 roo 7 407 7 73 '4-3 72.81 1.7 2.6 intron,5` UTR cbx -,CG18446 + chr2R_7_9870001 chr2R_9870001 0.57 RAL-304_75b 70 chr2R 10153126 10153192 blood 3 366 6 66 '4-2 61.95 1.9 2.1 intron,intron KCNQ -,CR45133 + chr2R_6_10150001 chr2R_10150001 0.67 RAL-304_75b 71 chr2R 11103188 11103254 P-element 2886 10 13 66 '8-5 46.62 2.7 3.5 intron luna - chr2R_13_11100001 chr2R_11100001 0.62 RAL-304_75b 72 chr2R 11293633 11293689 roo 9044 8661 6 56 '5-1 75.05 2.3 1.8 intergenic CG30033 +,CG18336 -,dare - chr2R_6_11290001 chr2R_11290001 0.83 RAL-304_75b 73 chr2R 11575032 11575162 INE-1 148 146 4 130 '2-2 51.53 0.3 3.1 intergenic not near genes chr2R_4_11575001 chr2R_11575001 0.50 RAL-304_75b 74 chr2R 12019763 12019817 hobo 10 2926 4 54 '2-2 57.51 2.5 1.1 5` UTR otk - chr2R_4_12015001 chr2R_12015001 0.50 RAL-304_75b 75 chr2R 12185348 12185389 accord 7362 19 8 41 '4-4 69.43 4.7 1.4 3` UTR,3` UTR CG13175 +,CG33964 + chr2R_8_12185001 chr2R_12185001 0.50 RAL-304_75b 76 chr2R 12957869 12957917 P-element 11 2868 9 48 '7-2 53.30 2.3 2.7 intergenic not near genes chr2R_9_12955001 chr2R_12955001 0.78 RAL-304_75b 77 chr2R 12988045 12988104 Tirant 5 379 6 59 '2-4 63.62 0.7 3.5 intergenic not near genes chr2R_6_12985001 chr2R_12985001 0.33 RAL-304_75b 78 chr2R 13387539 13387587 Transpac 293 4936 7 48 '4-3 60.85 0.6 4.4 intergenic not near genes chr2R_7_13385001 chr2R_13385001 0.57 RAL-304_75b 79 chr2R 13689442 13689493 297 6596 6959 8 51 '6-2 62.52 2.4 2.4 intron fas + chr2R_8_13685001 chr2R_13685001 0.75 RAL-304_75b 80 chr2R 13786024 13786073 roo 28 405 4 49 '2-2 74.59 0.0 4.0 intron Cpr50Ca + chr2R_4_13785001 chr2R_13785001 0.50 RAL-304_75b 81 chr2R 14713606 14713676 P-element 4 2883 17 70 '10-7 59.61 1.6 6.5 5` UTR mspo - chr2R_17_14710001 chr2R_14710001 0.59 RAL-304_75b 82 chr2R 17342905 17342967 hobo 5 2928 6 62 '3-3 58.59 0.9 3.2 intron mbl + chr2R_6_17340001 chr2R_17340001 0.50 RAL-304_75b 83 chr2R 18401763 18401839 roo 8662 403 12 76 '2-10 69.46 0.8 6.7 intergenic GstE3 + chr2R_12_18400001 chr2R_18400001 0.17 RAL-304_75b 84 chr2R 19077283 19077342 mdg1 419 7057 4 59 '3-1 60.55 0.4 2.9 intron 5-HT1A + chr2R_4_19075001 chr2R_19075001 0.75 RAL-304_75b 85 chr2R 19790488 19790555 diver 15 226 8 67 '2-6 62.35 0.5 5.3 intergenic not near genes chr2R_8_19790001 chr2R_19790001 0.25 RAL-304_75b 86 chr2R 21101661 21101685 hopper 1414 1396 19 24 '6-13 60.78 1.0 9.5 intergenic CG34396 +,ktub + chr2R_19_21100001 chr2R_21100001 0.32 RAL-304_75b 87 chr2R 21775050 21775079 412 467 494 7 29 '2-5 64.52 2.0 2.3 intergenic CG4021 + chr2R_7_21775001 chr2R_21775001 0.29 RAL-304_75b 88 chr2R 22270571 22270614 P-element 21 2874 10 43 '1-9 43.49 1.6 3.8 intron dve + chr2R_10_22270001 chr2R_22270001 0.10 RAL-304_75b 89 chr2R 22317214 22317269 BS 4991 5078 7 55 '5-2 56.97 0.6 4.4 intergenic Gp150 + chr2R_7_22315001 chr2R_22315001 0.71 RAL-304_75b 90 chr2R 22358740 22358793 jockey 4988 4673 22 53 '11-11 61.50 2.4 6.5 intron Liprin-gamma - chr2R_22_22355001 chr2R_22355001 0.50 RAL-304_75b 91 chr2R 22478322 22478378 Burdock 238 6140 9 56 '3-6 56.62 0.6 5.6 intergenic CG4752 + chr2R_9_22475001 chr2R_22475001 0.33 RAL-304_75b 92 chr2R 23188878 23188951 roo 8667 406 16 73 '5-11 67.17 1.9 5.5 intron CG34371 - chr2R_16_23185001 chr2R_23185001 0.31 RAL-304_75b 93 chr2R 23471421 23471481 hobo 3 2924 14 60 '12-2 64.99 1.4 5.8 intron,exon CG43795 +,Or59b - chr2R_14_23470001 chr2R_23470001 0.86 RAL-304_75b 94 chr2R 23547946 23547992 P-element 2867 12 12 46 '2-10 45.60 1.5 4.8 intron wmd - chr2R_12_23545001 chr2R_23545001 0.17 RAL-304_75b 95 chr2R 24492147 24492211 roo 393 8665 17 64 '6-11 67.27 0.7 10.0 intergenic CG13589 - chr2R_17_24490001 chr2R_24490001 0.35 RAL-304_75b 96 chr2R 24863274 24863340 mdg3 5264 243 15 66 '11-4 59.28 3.9 3.1 intergenic not near genes chr2R_15_24860001 chr2R_24860001 0.73 RAL-304_75b 97 chr3L 810803 810869 FB 8 3 5 66 '2-3 55.93 3.4 1.1 intergenic not near genes chr3L_5_810001 chr3L_810001 0.40 RAL-304_75b 98 chr3L 2216707 2216727 hobo 6 26 7 20 '4-3 59.76 1.4 2.9 intergenic not near genes chr3L_7_2215001 chr3L_2215001 0.57 RAL-304_75b 99 chr3L 2243733 2243809 roo 400 8660 15 76 '9-6 69.48 3.6 3.3 intergenic ACXD + chr3L_15_2240001 chr3L_2240001 0.60 RAL-304_75b 100 chr3L 2384844 2384911 flea 4758 5002 6 67 '4-2 64.59 1.2 2.7 intergenic not near genes chr3L_6_2380001 chr3L_2380001 0.67 RAL-304_75b 101 chr3L 2485936 2485961 jockey 14 35 10 25 '1-9 57.52 2.8 2.6 intron CG45186 + chr3L_10_2485001 chr3L_2485001 0.10 RAL-304_75b 102 chr3L 4475055 4475114 jockey 4974 5 7 59 '2-5 59.41 1.6 2.7 3` UTR CG11349 + chr3L_7_4475001 chr3L_4475001 0.29 RAL-304_75b 103 chr3L 4731064 4731092 hobo 4 31 8 28 '6-2 62.29 5.0 1.3 intron RhoGEF64C + chr3L_8_4730001 chr3L_4730001 0.75 RAL-304_75b 104 chr3L 4759511 4759559 hobo 2931 22 9 48 '2-7 71.35 1.5 3.6 intron RhoGEF64C + chr3L_9_4755001 chr3L_4755001 0.22 RAL-304_75b 105 chr3L 4871565 4871583 jockey 29 18 6 18 '3-3 58.66 2.6 1.7 intron CG17150 + chr3L_6_4870001 chr3L_4870001 0.50 RAL-304_75b 106 chr3L 5490070 5490140 opus 493 7 6 70 '4-2 63.40 1.8 2.1 intergenic not near genes chr3L_6_5490001 chr3L_5490001 0.67 RAL-304_75b 107 chr3L 5491649 5491705 1731 4317 296 8 56 '4-4 60.82 1.1 3.8 intergenic not near genes chr3L_8_5490001 chr3L_5490001 0.50 RAL-304_75b 108 chr3L 6662240 6662316 roo 6 410 18 76 '13-5 63.39 2.1 5.8 intergenic not near genes chr3L_18_6660001 chr3L_6660001 0.72 RAL-304_75b 109 chr3L 7319815 7319871 1360 3380 3147 9 56 '5-4 64.17 2.3 2.7 intergenic CG8607 + chr3L_9_7315001 chr3L_7315001 0.56 RAL-304_75b 110 chr3L 8360989 8361009 P-element 19 2886 10 20 '4-6 51.16 4.5 1.8 intergenic Idh - chr3L_10_8360001 chr3L_8360001 0.40 RAL-304_75b 111 chr3L 10073347 10073365 pogo 2079 2098 5 18 '2-3 59.10 0.7 2.9 intron dpr6 + chr3L_5_10070001 chr3L_10070001 0.40 RAL-304_75b 112 chr3L 10814839 10814881 copia 244 4896 10 42 '3-7 70.20 1.6 3.8 5` UTR CG42831 + chr3L_10_10810001 chr3L_10810001 0.30 RAL-304_75b 113 chr3L 11134067 11134119 412 7534 7070 14 52 '2-12 58.09 2.6 3.9 3` UTR CG42575 + chr3L_14_11130001 chr3L_11130001 0.14 RAL-304_75b 114 chr3L 11829137 11829205 pogo 4 2089 10 68 '6-4 63.11 1.6 3.8 intron,5` UTR CycA -,CG7264 + chr3L_10_11825001 chr3L_11825001 0.60 RAL-304_75b 115 chr3L 12638340 12638362 hobo 30 2914 4 22 '1-3 64.81 2.0 1.3 intron CR32111 + chr3L_4_12635001 chr3L_12635001 0.25 RAL-304_75b 116 chr3L 12981107 12981177 412 7 7544 4 70 '2-2 62.37 1.9 1.4 intergenic not near genes chr3L_4_12980001 chr3L_12980001 0.50 RAL-304_75b 117 chr3L 13056495 13056568 Transpac 301 4919 5 73 '2-3 63.47 0.3 3.8 intergenic not near genes chr3L_5_13055001 chr3L_13055001 0.40 RAL-304_75b 118 chr3L 13363844 13363873 hobo 2709 2913 9 29 '5-4 64.41 0.6 5.6 intergenic not near genes chr3L_9_13360001 chr3L_13360001 0.56 RAL-304_75b 119 chr3L 13426190 13426270 roo 8666 410 6 80 '4-2 62.10 1.2 2.7 exon CG14105 - chr3L_6_13425001 chr3L_13425001 0.67 RAL-304_75b 120 chr3L 13666988 13667011 hobo 2919 2709 4 23 '3-1 64.08 1.3 1.7 intron bru-3 - chr3L_4_13665001 chr3L_13665001 0.75 RAL-304_75b 121 chr3L 13684636 13684704 invader3 5460 5191 10 68 '8-2 66.39 1.0 5.0 intron bru-3 - chr3L_10_13680001 chr3L_13680001 0.80 RAL-304_75b 122 chr3L 14158853 14158880 Doc 34 7 6 27 '1-5 67.40 1.5 2.4 intergenic not near genes chr3L_6_14155001 chr3L_14155001 0.17 RAL-304_75b 123 chr3L 15010287 15010366 297 3 394 11 79 '7-4 65.91 1.9 3.8 intron Reck - chr3L_11_15010001 chr3L_15010001 0.64 RAL-304_75b 124 chr3L 15086909 15086984 roo 403 8665 8 75 '3-5 69.10 2.8 2.1 intron cp309 - chr3L_8_15085001 chr3L_15085001 0.38 RAL-304_75b 125 chr3L 15141751 15141812 pogo 18 2098 10 61 '5-5 62.48 4.3 1.9 intron Pdi - chr3L_10_15140001 chr3L_15140001 0.50 RAL-304_75b 126 chr3L 16555696 16555733 hobo 29 2927 5 37 '2-3 61.33 2.5 1.4 intergenic not near genes chr3L_5_16555001 chr3L_16555001 0.40 RAL-304_75b 127 chr3L 18047362 18047428 roo 8671 401 16 66 '6-10 65.75 2.0 5.3 intron Eip75B - chr3L_16_18045001 chr3L_18045001 0.38 RAL-304_75b 128 chr3L 18840511 18840567 Tirant 387 8122 13 56 '4-9 57.97 0.9 6.8 intron Indy - chr3L_13_18840001 chr3L_18840001 0.31 RAL-304_75b 129 chr3L 18920421 18920473 Juan 4202 4 8 52 '5-3 61.63 0.4 5.7 intergenic CG3819 -,CG18223 - chr3L_8_18920001 chr3L_18920001 0.62 RAL-304_75b 130 chr3L 18948615 18948631 roo 9060 9045 5 16 '2-3 60.18 2.7 1.4 intergenic not near genes chr3L_5_18945001 chr3L_18945001 0.40 RAL-304_75b 131 chr3L 19513167 19513224 roo 410 8689 6 57 '4-2 70.61 2.2 1.9 intergenic not near genes chr3L_6_19510001 chr3L_19510001 0.67 RAL-304_75b 132 chr3L 19948514 19948554 Max-element 8264 289 5 40 '3-2 70.73 2.4 1.5 intron Ac76E + chr3L_5_19945001 chr3L_19945001 0.60 RAL-304_75b 133 chr3L 20555161 20555234 roo 400 8663 9 73 '1-8 62.61 1.1 4.3 intergenic not near genes chr3L_9_20555001 chr3L_20555001 0.11 RAL-304_75b 134 chr3L 21044561 21044588 FB 1 28 4 27 '3-1 68.67 3.0 1.0 intron siz + chr3L_4_21040001 chr3L_21040001 0.75 RAL-304_75b 135 chr3L 21192537 21192589 jockey 4985 17 6 52 '5-1 57.85 0.0 6.0 intron CG42337 - chr3L_6_21190001 chr3L_21190001 0.83 RAL-304_75b 136 chr3L 21383719 21383739 FB 23 3 4 20 '3-1 62.67 2.1 1.3 intron rgn + chr3L_4_21380001 chr3L_21380001 0.75 RAL-304_75b 137 chr3L 21720606 21720654 Tabor 6847 474 8 48 '2-6 53.94 1.3 3.5 intergenic not near genes chr3L_8_21720001 chr3L_21720001 0.25 RAL-304_75b 138 chr3L 21996182 21996200 Burdock 6386 6368 8 18 '2-6 68.58 1.5 3.2 intergenic not near genes chr3L_8_21995001 chr3L_21995001 0.25 RAL-304_75b 139 chr3L 22158684 22158743 roo 8664 9050 13 59 '8-5 64.50 2.0 4.3 intron olf413 + chr3L_13_22155001 chr3L_22155001 0.62 RAL-304_75b 140 chr3L 22232684 22232737 roo 13 397 11 53 '2-9 63.78 1.4 4.6 intron olf413 + chr3L_11_22230001 chr3L_22230001 0.18 RAL-304_75b 141 chr3L 22277314 22277371 hobo 8 2927 10 57 '4-6 64.71 1.5 4.0 intron srpk79D + chr3L_10_22275001 chr3L_22275001 0.40 RAL-304_75b 142 chr3L 22635689 22635743 hopper 1410 1393 5 54 '3-2 61.77 0.8 2.8 intron CG14459 - chr3L_5_22635001 chr3L_22635001 0.60 RAL-304_75b 143 chr3L 23271238 23271296 Tirant 8489 9 4 58 '3-1 59.11 2.2 1.2 intron nAChRalpha4 + chr3L_4_23270001 chr3L_23270001 0.75 RAL-304_75b 144 chr3L 23893225 23893299 roo 403 8663 8 74 '4-4 69.03 2.9 2.1 intron CG40470 - chr3L_8_23890001 chr3L_23890001 0.50 RAL-304_75b 145 chr3L 27174920 27174992 pogo 2089 4 15 72 '9-6 68.85 3.3 3.5 intergenic not near genes chr3L_15_27170001 chr3L_27170001 0.60 RAL-304_75b 146 chr3R 3611246 3611292 roo 8664 9038 4 46 '1-3 69.22 1.5 1.6 intergenic not near genes chr3R_4_3610001 chr3R_3610001 0.25 RAL-304_75b 147 chr3R 3620686 3620708 gypsy5 406 384 11 22 '9-2 62.96 1.7 4.1 intergenic not near genes chr3R_11_3620001 chr3R_3620001 0.82 RAL-304_75b 148 chr3R 4194316 4194348 17.6 6955 470 5 32 '4-1 76.48 0.8 2.8 intergenic not near genes chr3R_5_4190001 chr3R_4190001 0.80 RAL-304_75b 149 chr3R 5066617 5066647 Tirant 8108 8139 11 30 '2-9 67.01 4.2 2.1 intergenic not near genes chr3R_11_5065001 chr3R_5065001 0.18 RAL-304_75b 150 chr3R 6687774 6687840 roo 395 1 6 66 '5-1 63.27 0.7 3.5 3` UTR Ccp84Ag + chr3R_6_6685001 chr3R_6685001 0.83 RAL-304_75b 151 chr3R 6688672 6688719 Tirant 20 383 10 47 '1-9 60.82 2.1 3.2 intergenic not near genes chr3R_10_6685001 chr3R_6685001 0.10 RAL-304_75b 152 chr3R 6843037 6843104 roo 8669 403 7 67 '3-4 57.97 1.5 2.8 intron Scr - chr3R_7_6840001 chr3R_6840001 0.43 RAL-304_75b 153 chr3R 7142554 7142588 pogo 17 2070 4 34 '2-2 72.27 0.8 2.2 intergenic not near genes chr3R_4_7140001 chr3R_7140001 0.50 RAL-304_75b 154 chr3R 7296811 7296846 hopper 1397 27 4 35 '3-1 69.15 3.6 0.9 intron rn - chr3R_4_7295001 chr3R_7295001 0.75 RAL-304_75b 155 chr3R 7315701 7315721 I-element 28 9 16 20 '11-5 65.67 2.8 4.2 3` UTR CG10029 - chr3R_16_7315001 chr3R_7315001 0.69 RAL-304_75b 156 chr3R 7477618 7477633 jockey 32 16 7 15 '4-3 60.15 2.0 2.3 intergenic not near genes chr3R_7_7475001 chr3R_7475001 0.57 RAL-304_75b 157 chr3R 7491778 7491830 invader6 360 17 13 52 '10-3 55.36 0.4 9.3 intron alpha-Est10 - chr3R_13_7490001 chr3R_7490001 0.77 RAL-304_75b 158 chr3R 7618501 7618555 Stalker2 7271 7647 6 54 '1-5 61.23 1.6 2.3 intron CG34127 - chr3R_6_7615001 chr3R_7615001 0.17 RAL-304_75b 159 chr3R 7633065 7633105 mdg1 412 31 6 40 '5-1 58.42 2.6 1.7 intron CG34127 - chr3R_6_7630001 chr3R_7630001 0.83 RAL-304_75b 160 chr3R 7687607 7687661 Transpac 5201 4918 4 54 '2-2 68.81 0.6 2.5 intron Nlg1 + chr3R_4_7685001 chr3R_7685001 0.50 RAL-304_75b 161 chr3R 7725285 7725320 Transpac 4943 287 10 35 '6-4 65.97 0.5 6.7 intergenic not near genes chr3R_10_7725001 chr3R_7725001 0.60 RAL-304_75b 162 chr3R 7828145 7828216 roo 400 8665 5 71 '4-1 61.60 4.6 0.9 intron CG34384 + chr3R_5_7825001 chr3R_7825001 0.80 RAL-304_75b 163 chr3R 9921360 9921420 roo 413 8688 9 60 '7-2 71.72 1.3 3.9 intron Glut4EF + chr3R_9_9920001 chr3R_9920001 0.78 RAL-304_75b 164 chr3R 9934223 9934303 Tirant 399 8110 7 80 '1-6 63.79 0.4 5.0 intron Glut4EF + chr3R_7_9930001 chr3R_9930001 0.14 RAL-304_75b 165 chr3R 10057420 10057482 hopper 1402 1410 10 62 '7-3 66.86 1.6 3.8 intergenic not near genes chr3R_10_10055001 chr3R_10055001 0.70 RAL-304_75b 166 chr3R 10146161 10146218 412 4 7537 15 57 '3-12 56.73 1.3 6.5 intron Invadolysin + chr3R_15_10145001 chr3R_10145001 0.20 RAL-304_75b 167 chr3R 10491659 10491699 roo 400 8696 5 40 '3-2 71.91 1.9 1.7 intergenic not near genes chr3R_5_10490001 chr3R_10490001 0.60 RAL-304_75b 168 chr3R 10925203 10925245 blood 368 29 4 42 '1-3 67.91 0.5 2.7 intergenic not near genes chr3R_4_10925001 chr3R_10925001 0.25 RAL-304_75b 169 chr3R 11124538 11124617 flea 4757 256 5 79 '1-4 52.81 2.4 1.5 intergenic not near genes chr3R_5_11120001 chr3R_11120001 0.20 RAL-304_75b 170 chr3R 11449674 11449707 hopper 1382 10 10 33 '4-6 64.99 1.3 4.3 intron,intron sals -,CG17230 + chr3R_10_11445001 chr3R_11445001 0.40 RAL-304_75b 171 chr3R 11470289 11470562 hobo 2921 4 6 273 '4-2 59.40 0.2 5.0 intergenic not near genes chr3R_6_11470001 chr3R_11470001 0.67 RAL-304_75b 172 chr3R 11569124 11569258 P-element 2881 10 8 134 '4-4 58.87 0.9 4.2 intergenic Mrp4 + chr3R_8_11565001 chr3R_11565001 0.50 RAL-304_75b 173 chr3R 12162836 12162915 Burdock 2 6390 16 79 '2-14 65.10 0.6 10.0 intergenic Cpn - chr3R_16_12160001 chr3R_12160001 0.12 RAL-304_75b 174 chr3R 12623773 12623857 opus 497 110 11 84 '8-3 71.54 4.3 2.1 3` UTR Vha55 - chr3R_11_12620001 chr3R_12620001 0.73 RAL-304_75b 175 chr3R 12780246 12780294 hobo 2916 6 6 48 '3-3 60.09 1.7 2.2 intron beat-Vc - chr3R_6_12780001 chr3R_12780001 0.50 RAL-304_75b 176 chr3R 13838043 13838074 pogo 2100 2068 5 31 '3-2 69.61 0.6 3.1 intergenic Nsf2 -,CG31495 - chr3R_5_13835001 chr3R_13835001 0.60 RAL-304_75b 177 chr3R 14546958 14547004 roo 396 22 6 46 '5-1 60.16 0.9 3.2 intron Pde6 - chr3R_6_14545001 chr3R_14545001 0.83 RAL-304_75b 178 chr3R 17846557 17846579 blood 353 7387 8 22 '4-4 63.38 1.0 4.0 intron tinc + chr3R_8_17845001 chr3R_17845001 0.50 RAL-304_75b 179 chr3R 17991860 17991885 Ivk 24 5355 7 25 '6-1 66.99 2.8 1.8 intron cpo + chr3R_7_17990001 chr3R_17990001 0.86 RAL-304_75b 180 chr3R 19059991 19060069 roo 8669 411 17 78 '12-5 67.54 2.2 5.3 intron cdi - chr3R_17_19055001 chr3R_19055001 0.71 RAL-304_75b 181 chr3R 19719182 19719253 copia 251 5 9 71 '6-3 62.85 1.3 3.9 intergenic not near genes chr3R_9_19715001 chr3R_19715001 0.67 RAL-304_75b 182 chr3R 20103373 20103440 opus 7496 10 10 67 '9-1 62.93 4.5 1.8 intergenic not near genes chr3R_10_20100001 chr3R_20100001 0.90 RAL-304_75b 183 chr3R 20169524 20169542 blood 7379 354 9 18 '4-5 62.59 2.6 2.5 intron CG5023 + chr3R_9_20165001 chr3R_20165001 0.44 RAL-304_75b 184 chr3R 20845106 20845125 17.6 474 493 4 19 '3-1 70.33 2.9 1.0 intergenic CG15695 + chr3R_4_20845001 chr3R_20845001 0.75 RAL-304_75b 185 chr3R 21285801 21285828 Doc 32 8 5 27 '4-1 70.91 2.1 1.6 intron SIFaR - chr3R_5_21285001 chr3R_21285001 0.80 RAL-304_75b 186 chr3R 21788989 21789057 Burdock 6 247 10 68 '5-5 62.07 3.3 2.3 intron CASK - chr3R_10_21785001 chr3R_21785001 0.50 RAL-304_75b 187 chr3R 21986289 21986353 roo 9066 10 8 64 '5-3 60.22 1.9 2.8 intron Eip93F + chr3R_8_21985001 chr3R_21985001 0.62 RAL-304_75b 188 chr3R 22668461 22668510 FB 24 4 12 49 '6-6 66.77 0.4 8.6 intron wake + chr3R_12_22665001 chr3R_22665001 0.50 RAL-304_75b 189 chr3R 23386187 23386257 P-element 276 2885 14 70 '12-2 53.86 2.7 3.8 intergenic not near genes chr3R_14_23385001 chr3R_23385001 0.86 RAL-304_75b 190 chr3R 24340394 24340442 412 16 476 9 48 '1-8 60.68 1.5 3.6 3` UTR CG6432 + chr3R_9_24340001 chr3R_24340001 0.11 RAL-304_75b 191 chr3R 24581737 24581815 S-element 1715 5 7 78 '2-5 61.30 0.0 7.0 intron CG13624 - chr3R_7_24580001 chr3R_24580001 0.29 RAL-304_75b 192 chr3R 24587958 24588025 S-element 1700 1715 6 67 '1-5 69.11 0.7 3.5 intron mld + chr3R_6_24585001 chr3R_24585001 0.17 RAL-304_75b 193 chr3R 25278018 25278079 roo 8686 411 7 61 '4-3 66.11 0.9 3.7 intergenic CG10514 - chr3R_7_25275001 chr3R_25275001 0.57 RAL-304_75b 194 chr3R 25789836 25789903 Quasimodo 2 7356 6 67 '3-3 60.74 1.5 2.4 3` UTR CG31093 - chr3R_6_25785001 chr3R_25785001 0.50 RAL-304_75b 195 chr3R 25796019 25796040 BS 5002 5023 9 21 '6-3 61.24 4.4 1.7 intergenic not near genes chr3R_9_25795001 chr3R_25795001 0.67 RAL-304_75b 196 chr3R 26540229 26540256 FB 2 28 6 27 '4-2 65.50 5.1 1.0 intron scrib + chr3R_6_26540001 chr3R_26540001 0.67 RAL-304_75b 197 chr3R 27505253 27505303 hobo 2924 13 5 50 '2-3 55.88 1.6 1.9 intergenic not near genes chr3R_5_27505001 chr3R_27505001 0.40 RAL-304_75b 198 chr3R 27760644 27760668 412 7078 1 7 24 '1-6 64.80 3.2 1.7 intergenic not near genes chr3R_7_27760001 chr3R_27760001 0.14 RAL-304_75b 199 chr3R 28239168 28239207 S-element 1700 1687 7 39 '6-1 63.19 2.4 2.1 3` UTR CG34354 + chr3R_7_28235001 chr3R_28235001 0.86 RAL-304_75b 200 chr3R 28948647 28948716 blood 7389 7023 8 69 '1-7 55.35 1.1 3.8 intron CG14521 - chr3R_8_28945001 chr3R_28945001 0.12 RAL-304_75b 201 chr3R 29021374 29021434 Max-element 8524 8242 9 60 '5-4 62.11 3.6 2.0 3` UTR CR44264 - chr3R_9_29020001 chr3R_29020001 0.56 RAL-304_75b 202 chr3R 29182540 29182588 412 7545 31 5 48 '1-4 74.07 2.5 1.4 intron CG14509 - chr3R_5_29180001 chr3R_29180001 0.20 RAL-304_75b 203 chr3R 29474986 29475044 Tabor 7313 6851 8 58 '2-6 54.54 1.7 3.0 intron Ptp99A + chr3R_8_29470001 chr3R_29470001 0.25 RAL-304_75b 204 chr3R 29573260 29573386 INE-1 530 544 4 126 '1-3 63.04 2.0 1.3 intergenic not near genes chr3R_4_29570001 chr3R_29570001 0.25 RAL-304_75b 205 chr3R 31028725 31028791 roo 7 401 8 66 '3-5 58.87 1.7 3.0 intergenic not near genes chr3R_8_31025001 chr3R_31025001 0.38 RAL-304_75b 206 chr3R 31266205 31266269 roo 395 3 8 64 '3-5 73.12 2.1 2.6 exon ppk24 + chr3R_8_31265001 chr3R_31265001 0.38 RAL-304_75b 207 chr4 311558 311585 1360 32 7 5 27 '3-2 66.28 1.2 2.3 3` UTR Zip102B - chr4_5_310001 chr4_310001 0.60 RAL-304_75b 208 chrX 1754616 1754655 Burdock 15 227 6 39 '5-1 65.55 2.9 1.5 intergenic not near genes chrX_6_1750001 chrX_1750001 0.83 RAL-304_75b 209 chrX 4019383 4019425 hobo 14 2920 6 42 '5-1 61.83 1.2 2.7 intergenic not near genes chrX_6_4015001 chrX_4015001 0.83 RAL-304_75b 210 chrX 4721493 4721562 pogo 6 2097 4 69 '3-1 68.67 1.0 2.0 intron Proc-R + chrX_4_4720001 chrX_4720001 0.75 RAL-304_75b 211 chrX 4745182 4745250 412 6 7541 13 68 '6-7 66.00 1.0 6.5 intergenic not near genes chrX_13_4745001 chrX_4745001 0.46 RAL-304_75b 212 chrX 4867411 4867487 roo 8 411 12 76 '6-6 62.37 2.0 4.0 intron CG42594 + chrX_12_4865001 chrX_4865001 0.50 RAL-304_75b 213 chrX 5234525 5234596 pogo 10 2098 13 71 '2-11 64.78 1.3 5.7 intron,intron CG15465 +,rg + chrX_13_5230001 chrX_5230001 0.15 RAL-304_75b 214 chrX 6542642 6542712 pogo 2091 4 16 70 '4-12 68.44 1.0 8.0 intron CG34417 + chrX_16_6540001 chrX_6540001 0.25 RAL-304_75b 215 chrX 8697935 8698003 hobo 1 2930 14 68 '10-4 63.68 2.0 4.7 intergenic not near genes chrX_14_8695001 chrX_8695001 0.71 RAL-304_75b 216 chrX 9041665 9041721 P-element 2877 2876 11 56 '2-9 41.06 0.4 7.9 intron,intron CR43836 -,CG42388 + chrX_11_9040001 chrX_9040001 0.18 RAL-304_75b 217 chrX 9931500 9931553 I-element 5345 10 5 53 '3-2 60.99 1.4 2.1 intergenic not near genes chrX_5_9930001 chrX_9930001 0.60 RAL-304_75b 218 chrX 10128743 10128794 3S18 318 5769 5 51 '3-2 66.11 1.6 1.9 intron,intron RhoU +,CR44894 - chrX_5_10125001 chrX_10125001 0.60 RAL-304_75b 219 chrX 10320887 10320948 mdg3 245 5271 7 61 '5-2 61.52 0.9 3.7 intron alpha-Man-I - chrX_7_10320001 chrX_10320001 0.71 RAL-304_75b 220 chrX 10685440 10685512 roo 8662 9062 4 72 '2-2 66.72 0.8 2.2 intron X11Lbeta + chrX_4_10685001 chrX_10685001 0.50 RAL-304_75b 221 chrX 11533589 11533644 copia 254 4893 6 55 '2-4 72.67 0.0 6.0 intron Drak + chrX_6_11530001 chrX_11530001 0.33 RAL-304_75b 222 chrX 12820389 12820405 Max-element 8248 8264 5 16 '1-4 64.32 0.4 3.6 intron Pde9 - chrX_5_12820001 chrX_12820001 0.20 RAL-304_75b 223 chrX 13642040 13642094 P-element 2882 17 6 54 '5-1 61.07 0.4 4.3 intron NFAT + chrX_6_13640001 chrX_13640001 0.83 RAL-304_75b 224 chrX 14189032 14189113 roo 8663 408 6 81 '4-2 66.62 2.0 2.0 intergenic CG11585 + chrX_6_14185001 chrX_14185001 0.67 RAL-304_75b 225 chrX 14541968 14541989 roo 2 8685 7 21 '3-4 69.03 0.0 7.0 3` UTR CR45521 - chrX_7_14540001 chrX_14540001 0.43 RAL-304_75b 226 chrX 14858582 14858659 roo 58 406 7 77 '2-5 64.34 1.9 2.4 intron Flo2 + chrX_7_14855001 chrX_14855001 0.29 RAL-304_75b 227 chrX 14976398 14976424 springer 7521 359 7 26 '5-2 68.47 0.0 7.0 intron eag + chrX_7_14975001 chrX_14975001 0.71 RAL-304_75b 228 chrX 15286490 15286541 flea 4764 5003 4 51 '1-3 60.20 1.4 1.7 intergenic not near genes chrX_4_15285001 chrX_15285001 0.25 RAL-304_75b 229 chrX 15946713 15946774 flea 4779 257 4 61 '1-3 71.34 0.0 4.0 intergenic mmd -,Rrp47 + chrX_4_15945001 chrX_15945001 0.25 RAL-304_75b 230 chrX 19059431 19059457 hobo 19 2906 6 26 '3-3 66.44 0.9 3.2 intron CG14190 + chrX_6_19055001 chrX_19055001 0.50 RAL-304_75b 231 chrX 20328697 20328772 roo 1 9067 9 75 '8-1 71.99 1.8 3.2 intron CG1504 - chrX_9_20325001 chrX_20325001 0.89 RAL-304_75b 232 chrX 20479626 20479702 roo 6 410 6 76 '3-3 59.80 1.7 2.2 intron RhoGAP19D - chrX_6_20475001 chrX_20475001 0.50 RAL-304_75b 233 chrX 20875334 20875374 412 7077 7529 8 40 '1-7 61.17 1.9 2.8 intron shakB - chrX_8_20875001 chrX_20875001 0.12 RAL-304_75b 234 chrX 21772476 21772496 springer 7151 7202 6 20 '4-2 66.05 0.7 3.5 intergenic not near genes chrX_6_21770001 chrX_21770001 0.67 RAL-304_75b