SV#	Chr_5p	Chr_coord_5p_start	Chr_coord_5p_end	Chr_3p	Chr_coord_3p_start	Chr_coord_3p_end	repName	Reads_collapsed	avg_del_len	RefGen_3prime	Refgen_5prime	RefGen_Avg	Coverage_Ratio	size	Chr_5p	Chr_coord_5p	classification_5p	comment_5p	Chr_mid	Chr_coord_mid	classification_mid	comment_mid	Chr_3p	Chr_coord_3p	classification_3p	comment_3p	depletion_code	loci_code	libname
1	chr2L	47440	47481	chr2L	52570	52610	jockey	24	5129	28.5	20.5	24.5	0.9	5170	chr2L	47440	intron	Cda5 -	chr2L	50025	intron	Cda5 -	chr2L	52610	intron	Cda5 -	chr2L_24_50001	chr2L_50001	RAL-304_100b
4	chr2L	347860	347918	chr2L	355385	355443	blood	36	7523	7.5	7.5	7.5	4.2	7583	chr2L	347860	3` UTR	Plc21C +	chr2L	351652	intron	Plc21C +	chr2L	355443	3` UTR	Plc21C +	chr2L_36_350001	chr2L_350001	RAL-304_100b
14	chr2L	686917	686922	chr2L	695975	695987	roo	8	9062	35.0	19.5	27.2	0.3	9070	chr2L	686917	intron	ds -	chr2L	691452	intron	ds -	chr2L	695987	intron	ds -	chr2L_8_690001	chr2L_690001	RAL-304_100b
15	chr2L	686923	686952	chr2L	695969	695992	roo	27	9059	13.5	18.0	15.8	1.6	9069	chr2L	686923	intron	ds -	chr2L	691458	intron	ds -	chr2L	695992	intron	ds -	chr2L_27_690001	chr2L_690001	RAL-304_100b
16	chr2L	770447	770493	chr2L	772246	772289	Bari1	46	1798	19.5	21.0	20.2	2.2	1842	chr2L	770447	intergenic	not near genes	chr2L	771368	intergenic	not near genes	chr2L	772289	intergenic	CR44614 +	chr2L_46_770001	chr2L_770001	RAL-304_100b
26	chr2L	976853	976913	chr2L	984514	984574	roo	37	7657	13.0	13.5	13.2	2.6	7721	chr2L	976853	intergenic	not near genes	chr2L	980714	intergenic	not near genes	chr2L	984574	intergenic	not near genes	chr2L_37_980001	chr2L_980001	RAL-304_100b
27	chr2L	996698	996749	chr2L	1005818	1005869	roo	34	9119	10.0	18.5	14.2	2.2	9171	chr2L	996698	intergenic	not near genes	chr2L	1001284	intergenic	not near genes	chr2L	1005869	intergenic	not near genes	chr2L_34_1000001	chr2L_1000001	RAL-304_100b
38	chr2L	1220102	1220162	chr2L	1227593	1227653	blood	40	7490	10.5	7.0	8.8	4.1	7551	chr2L	1220102	intron	CG42329 +	chr2L	1223878	intron	CG42329 +	chr2L	1227653	intron	CG42329 +	chr2L_40_1220001	chr2L_1220001	RAL-304_100b
41	chr2L	1301748	1301781	chr2L	1302310	1302345	gypsy	5	562	0.0	16.0	8.0	0.6	597	chr2L	1301748	intergenic	not near genes	chr2L	1302046	intergenic	not near genes	chr2L	1302345	intergenic	not near genes	chr2L_5_1300001	chr2L_1300001	RAL-304_100b
48	chr2L	1570667	1570723	chr2L	1573564	1573578	F-element	44	2895	18.0	21.5	19.8	2.1	2911	chr2L	1570667	intron	haf +	chr2L	1572122	intron	haf +	chr2L	1573578	intron	haf +	chr2L_44_1570001	chr2L_1570001	RAL-304_100b
55	chr2L	1678933	1679007	chr2L	1686441	1686452	blood	23	7495	0.5	17.5	9.0	2.3	7519	chr2L	1678933	intron	chinmo +	chr2L	1682692	intron	chinmo +	chr2L	1686452	intron	chinmo +	chr2L_23_1680001	chr2L_1680001	RAL-304_100b
56	chr2L	1711344	1711387	chr2L	1711678	1711736	mdg3	66	342	22.0	14.0	18.0	3.5	392	chr2L	1711344	3` UTR,3` UTR	mRpL48 +,frtz -	chr2L	1711540	3` UTR	frtz -	chr2L	1711736	3` UTR	frtz -	chr2L_66_1710001	chr2L_1710001	RAL-304_100b
69	chr2L	2100375	2100406	chr2L	2109526	2109552	roo	37	9163	20.5	25.0	22.8	1.6	9177	chr2L	2100375	intron	dpr3 -	chr2L	2104964	intron	dpr3 -	chr2L	2109552	intron	dpr3 -	chr2L_37_2100001	chr2L_2100001	RAL-304_100b
70	chr2L	2112095	2112100	chr2L	2119774	2119787	opus	5	7679	46.0	21.0	33.5	0.1	7692	chr2L	2112095	intergenic	not near genes	chr2L	2115941	intergenic	not near genes	chr2L	2119787	intergenic	not near genes	chr2L_5_2115001	chr2L_2115001	RAL-304_100b
71	chr2L	2112101	2112145	chr2L	2119773	2119796	opus	33	7664	14.5	19.5	17.0	1.8	7695	chr2L	2112101	intergenic	not near genes	chr2L	2115948	intergenic	not near genes	chr2L	2119796	intergenic	not near genes	chr2L_33_2115001	chr2L_2115001	RAL-304_100b
78	chr2L	2294030	2294074	chr2L	2299244	2299295	copia	49	5217	15.0	21.5	18.2	2.6	5265	chr2L	2294030	intergenic	not near genes	chr2L	2296662	intergenic	not near genes	chr2L	2299295	intergenic	not near genes	chr2L_49_2295001	chr2L_2295001	RAL-304_100b
90	chr2L	2565530	2565563	chr2L	2571628	2571661	297	22	6096	13.0	22.0	17.5	1.2	6131	chr2L	2565530	exon	Cyp309a2 -	chr2L	2568596	intron	Cyp309a2 -	chr2L	2571661	exon	Cyp309a2 -	chr2L_22_2565001	chr2L_2565001	RAL-304_100b
93	chr2L	2661177	2661220	chr2L	2663035	2663083	I-element	30	1853	16.0	19.0	17.5	1.6	1906	chr2L	2661177	intergenic	not near genes	chr2L	2662130	intergenic	not near genes	chr2L	2663083	intergenic	not near genes	chr2L_30_2660001	chr2L_2660001	RAL-304_100b
94	chr2L	2661221	2661222	chr2L	2663032	2663067	I-element	5	1828	15.5	15.0	15.2	0.3	1846	chr2L	2661221	intergenic	not near genes	chr2L	2662144	intergenic	not near genes	chr2L	2663067	intergenic	not near genes	chr2L_5_2660001	chr2L_2660001	RAL-304_100b
95	chr2L	2661223	2661229	chr2L	2663030	2663072	I-element	31	1837	13.0	14.5	13.8	2.1	1849	chr2L	2661223	intergenic	not near genes	chr2L	2662148	intergenic	not near genes	chr2L	2663072	intergenic	not near genes	chr2L_31_2660001	chr2L_2660001	RAL-304_100b
98	chr2L	2772585	2772625	chr2L	2779194	2779232	297	26	6603	17.5	21.0	19.2	1.3	6647	chr2L	2772585	3` UTR	Syt1 -	chr2L	2775908	intron	Syt1 -	chr2L	2779232	3` UTR	Syt1 -	chr2L_26_2775001	chr2L_2775001	RAL-304_100b
103	chr2L	2933274	2933324	chr2L	2935476	2935496	pogo	45	2198	26.0	16.5	21.2	2.0	2222	chr2L	2933274	intron	lilli +	chr2L	2934385	intron	lilli +	chr2L	2935496	intron	lilli +	chr2L_45_2930001	chr2L_2930001	RAL-304_100b
105	chr2L	3073008	3073012	chr2L	3078236	3078240	copia	4	5228	49.0	18.5	33.8	0.1	5232	chr2L	3073008	intron	toc -	chr2L	3075624	intron	toc -	chr2L	3078240	intron	toc -	chr2L_4_3075001	chr2L_3075001	RAL-304_100b
106	chr2L	3073013	3073060	chr2L	3078232	3078288	copia	52	5226	18.0	16.5	17.2	2.9	5275	chr2L	3073013	intron	toc -	chr2L	3075650	intron	toc -	chr2L	3078288	intron	toc -	chr2L_52_3075001	chr2L_3075001	RAL-304_100b
111	chr2L	3202719	3202772	chr2L	3210173	3210222	mdg1	29	7453	5.5	0.0	2.8	7.6	7503	chr2L	3202719	intergenic	not near genes	chr2L	3206470	intergenic	not near genes	chr2L	3210222	intergenic	CR45336 +	chr2L_29_3205001	chr2L_3205001	RAL-304_100b
115	chr2L	3251470	3251526	chr2L	3259059	3259090	springer	28	7589	15.0	11.0	13.0	2.0	7620	chr2L	3251470	intergenic	not near genes	chr2L	3255280	intergenic	not near genes	chr2L	3259090	intergenic	not near genes	chr2L_28_3255001	chr2L_3255001	RAL-304_100b
120	chr2L	3388573	3388626	chr2L	3388839	3388892	pogo	28	264	6.0	10.0	8.0	3.1	319	chr2L	3388573	intergenic	CG42460 -	chr2L	3388732	intergenic	CG42460 -	chr2L	3388892	intergenic	CG42460 -,CR44791 +	chr2L_28_3385001	chr2L_3385001	RAL-304_100b
135	chr2L	3649762	3649805	chr2L	3654994	3655007	copia	19	5225	0.0	11.0	5.5	2.9	5245	chr2L	3649762	intron	for -	chr2L	3652384	intron	for -	chr2L	3655007	intron	for -	chr2L_19_3650001	chr2L_3650001	RAL-304_100b
155	chr2L	4066018	4066062	chr2L	4068868	4068873	Juan	30	2848	20.5	26.5	23.5	1.2	2855	chr2L	4066018	intron	ed +	chr2L	4067446	intron	ed +	chr2L	4068873	intron	ed +	chr2L_30_4065001	chr2L_4065001	RAL-304_100b
176	chr2L	4601680	4601716	chr2L	4609146	4609182	mdg1	34	7465	25.0	13.5	19.2	1.7	7502	chr2L	4601680	intron	dp -	chr2L	4605431	intron	dp -	chr2L	4609182	intron	dp -	chr2L_34_4605001	chr2L_4605001	RAL-304_100b
177	chr2L	4601717	4601734	chr2L	4609143	4609200	mdg1	21	7461	17.5	12.5	15.0	1.3	7483	chr2L	4601717	intron	dp -	chr2L	4605458	intron	dp -	chr2L	4609200	intron	dp -	chr2L_21_4605001	chr2L_4605001	RAL-304_100b
178	chr2L	4661820	4661856	chr2L	4669425	4669459	opus	29	7603	13.0	31.0	22.0	1.3	7639	chr2L	4661820	intergenic	not near genes	chr2L	4665640	intergenic	not near genes	chr2L	4669459	intergenic	not near genes	chr2L_29_4665001	chr2L_4665001	RAL-304_100b
187	chr2L	4918141	4918200	chr2L	4923239	4923336	jockey	25	5115	5.0	0.5	2.8	6.6	5195	chr2L	4918141	intron	hoe1 -	chr2L	4920738	intron	hoe1 -	chr2L	4923336	intron	hoe1 -	chr2L_25_4920001	chr2L_4920001	RAL-304_100b
190	chr2L	4953504	4953542	chr2L	4953770	4953776	pogo	5	257	13.0	0.0	6.5	0.7	272	chr2L	4953504	intergenic	Jon25Bii -	chr2L	4953640	intergenic	not near genes	chr2L	4953776	intergenic	not near genes	chr2L_5_4950001	chr2L_4950001	RAL-304_100b
202	chr2L	5342750	5342798	chr2L	5345155	5345203	Doc	25	2404	4.5	10.0	7.2	3.0	2453	chr2L	5342750	intergenic	not near genes	chr2L	5343976	intergenic	not near genes	chr2L	5345203	intergenic	not near genes	chr2L_25_5340001	chr2L_5340001	RAL-304_100b
221	chr2L	5827688	5827741	chr2L	5836721	5836774	roo	33	9030	10.5	16.0	13.2	2.3	9086	chr2L	5827688	intron	TrissinR +	chr2L	5832231	intron	TrissinR +	chr2L	5836774	intron	TrissinR +	chr2L_33_5830001	chr2L_5830001	RAL-304_100b
238	chr2L	6279615	6279653	chr2L	6279719	6279757	INE-1	22	102	10.0	6.0	8.0	2.4	142	chr2L	6279615	intron	Ddr +	chr2L	6279686	intron	Ddr +	chr2L	6279757	intron	Ddr +	chr2L_22_6275001	chr2L_6275001	RAL-304_100b
247	chr2L	6363126	6363182	chr2L	6366071	6366129	Burdock	57	2942	5.0	18.0	11.5	4.6	3003	chr2L	6363126	intergenic	not near genes	chr2L	6364628	intergenic	not near genes	chr2L	6366129	intergenic	not near genes	chr2L_57_6360001	chr2L_6360001	RAL-304_100b
248	chr2L	6426833	6426841	chr2L	6445118	6445126	roo	6	18285	33.0	16.0	24.5	0.2	18293	chr2L	6426833	3` UTR	CG9527 -	chr2L	6435980	intron	CG9527 -	chr2L	6445126	exon	CG9527 -	chr2L_6_6435001	chr2L_6435001	RAL-304_100b
249	chr2L	6426842	6426881	chr2L	6445117	6445166	roo	34	18284	19.0	16.0	17.5	1.8	18324	chr2L	6426842	3` UTR	CG9527 -	chr2L	6436004	intron	CG9527 -	chr2L	6445166	exon	CG9527 -	chr2L_34_6435001	chr2L_6435001	RAL-304_100b
250	chr2L	6426882	6426887	chr2L	6445114	6445159	roo	6	18268	18.0	15.0	16.5	0.3	18277	chr2L	6426882	3` UTR	CG9527 -	chr2L	6436020	intron	CG9527 -	chr2L	6445159	exon	CG9527 -	chr2L_6_6435001	chr2L_6435001	RAL-304_100b
272	chr2L	6876772	6876777	chr2L	6882967	6882991	diver	8	6201	37.5	14.0	25.8	0.3	6219	chr2L	6876772	intron	Nlg2 +	chr2L	6879882	intron	Nlg2 +	chr2L	6882991	intron	Nlg2 +	chr2L_8_6875001	chr2L_6875001	RAL-304_100b
273	chr2L	6876779	6876810	chr2L	6882965	6883011	diver	17	6200	21.0	13.0	17.0	0.9	6232	chr2L	6876779	intron	Nlg2 +	chr2L	6879895	intron	Nlg2 +	chr2L	6883011	intron	Nlg2 +	chr2L_17_6875001	chr2L_6875001	RAL-304_100b
275	chr2L	6991407	6991436	chr2L	6998551	6998565	HMS-Beagle	11	7140	23.0	18.5	20.8	0.5	7158	chr2L	6991407	intron	uif -	chr2L	6994986	intron	uif -	chr2L	6998565	intron	uif -	chr2L_11_6990001	chr2L_6990001	RAL-304_100b
293	chr2L	7343308	7343356	chr2L	7350443	7350472	roo	43	7136	21.0	18.5	19.8	2.1	7164	chr2L	7343308	intron	Wnt6 +	chr2L	7346890	intron	Wnt6 +	chr2L	7350472	intron	Wnt6 +	chr2L_43_7345001	chr2L_7345001	RAL-304_100b
297	chr2L	7548086	7548110	chr2L	7550553	7550572	Burdock	10	2462	17.5	21.5	19.5	0.5	2486	chr2L	7548086	intron	RapGAP1 -	chr2L	7549329	intron	RapGAP1 -	chr2L	7550572	intron	RapGAP1 -	chr2L_10_7545001	chr2L_7545001	RAL-304_100b
299	chr2L	7579170	7579211	chr2L	7579386	7579427	BS	14	216	8.0	0.5	4.2	2.7	257	chr2L	7579170	intergenic	RapGAP1 -	chr2L	7579298	intergenic	RapGAP1 -	chr2L	7579427	intergenic	RapGAP1 -	chr2L_14_7575001	chr2L_7575001	RAL-304_100b
309	chr2L	7977065	7977113	chr2L	7984066	7984114	297	33	6998	21.0	21.5	21.2	1.5	7049	chr2L	7977065	intron	Snoo -	chr2L	7980590	intron	Snoo -	chr2L	7984114	intron,5` UTR	Snoo -,CG7231 +	chr2L_33_7980001	chr2L_7980001	RAL-304_100b
312	chr2L	8013589	8013607	chr2L	8018819	8018837	copia	14	5230	27.0	0.0	13.5	1.0	5248	chr2L	8013589	intron	Tg +	chr2L	8016213	intron	Tg +	chr2L	8018837	intron	Tg +	chr2L_14_8015001	chr2L_8015001	RAL-304_100b
313	chr2L	8013619	8013643	chr2L	8023580	8023604	copia	16	9961	11.5	9.5	10.5	1.4	9985	chr2L	8013619	intron	Tg +	chr2L	8018612	intron	Tg +	chr2L	8023604	intron	Tg +	chr2L_16_8015001	chr2L_8015001	RAL-304_100b
314	chr2L	8018822	8018833	chr2L	8023583	8023642	Doc	13	4802	0.0	10.5	5.2	2.1	4820	chr2L	8018822	intron	Tg +	chr2L	8021232	intron	Tg +	chr2L	8023642	intron	Tg +	chr2L_13_8020001	chr2L_8020001	RAL-304_100b
325	chr2L	8452403	8452410	chr2L	8461599	8461600	roo	4	9194	18.0	16.5	17.2	0.2	9197	chr2L	8452403	intron	fu12 -	chr2L	8457002	intron	fu12 -	chr2L	8461600	intron	fu12 -	chr2L_4_8455001	chr2L_8455001	RAL-304_100b
326	chr2L	8452412	8452444	chr2L	8461592	8461613	roo	32	9192	9.5	14.5	12.0	2.5	9201	chr2L	8452412	intron	fu12 -	chr2L	8457012	intron	fu12 -	chr2L	8461613	intron	fu12 -	chr2L_32_8455001	chr2L_8455001	RAL-304_100b
333	chr2L	8594444	8594453	chr2L	8601523	8601532	297	6	7078	43.0	13.5	28.2	0.2	7088	chr2L	8594444	intron,3` UTR	Sema-1a +,CR43855 -	chr2L	8597988	intron	Sema-1a +	chr2L	8601532	intron	Sema-1a +	chr2L_6_8595001	chr2L_8595001	RAL-304_100b
334	chr2L	8594456	8594490	chr2L	8601518	8601569	297	21	7076	22.5	12.0	17.2	1.2	7113	chr2L	8594456	intron,3` UTR	Sema-1a +,CR43855 -	chr2L	8598012	intron	Sema-1a +	chr2L	8601569	intron	Sema-1a +	chr2L_21_8595001	chr2L_8595001	RAL-304_100b
340	chr2L	8723088	8723143	chr2L	8731490	8731545	Tirant	45	8400	12.0	14.0	13.0	3.2	8457	chr2L	8723088	intron	raw -	chr2L	8727316	intron	raw -	chr2L	8731545	intron	raw -	chr2L_45_8725001	chr2L_8725001	RAL-304_100b
353	chr2L	9000259	9000269	chr2L	9007794	9007804	roo	11	7535	36.5	10.0	23.2	0.5	7545	chr2L	9000259	intergenic	Try29F +	chr2L	9004032	intergenic	not near genes	chr2L	9007804	intergenic	not near genes	chr2L_11_9000001	chr2L_9000001	RAL-304_100b
354	chr2L	9000274	9000310	chr2L	9007792	9007805	roo	24	7531	19.5	9.0	14.2	1.6	7531	chr2L	9000274	intergenic	Try29F +	chr2L	9004040	intergenic	not near genes	chr2L	9007805	intergenic	not near genes	chr2L_24_9000001	chr2L_9000001	RAL-304_100b
368	chr2L	9217952	9217987	chr2L	9222759	9222799	Doc	26	4811	15.5	15.0	15.2	1.6	4847	chr2L	9217952	intron	tai +	chr2L	9220376	intron	tai +	chr2L	9222799	intron	tai +	chr2L_26_9220001	chr2L_9220001	RAL-304_100b
369	chr2L	9217988	9217995	chr2L	9222750	9222801	Doc	6	4802	14.0	11.0	12.5	0.4	4813	chr2L	9217988	intron	tai +	chr2L	9220394	intron	tai +	chr2L	9222801	intron	tai +	chr2L_6_9220001	chr2L_9220001	RAL-304_100b
378	chr2L	9393488	9393530	chr2L	9396475	9396521	jockey	33	2987	0.0	18.5	9.2	3.2	3033	chr2L	9393488	intron	Shawl -	chr2L	9395004	intron	Shawl -	chr2L	9396521	intron	Shawl -	chr2L_33_9395001	chr2L_9395001	RAL-304_100b
403	chr2L	9973703	9973716	chr2L	9980847	9980860	HMS-Beagle	6	7144	40.0	21.0	30.5	0.2	7157	chr2L	9973703	intergenic	not near genes	chr2L	9977282	intergenic	not near genes	chr2L	9980860	intergenic	not near genes	chr2L_6_9975001	chr2L_9975001	RAL-304_100b
404	chr2L	9973718	9973759	chr2L	9980846	9980863	HMS-Beagle	40	7134	18.0	20.5	19.2	2.0	7145	chr2L	9973718	intergenic	not near genes	chr2L	9977290	intergenic	not near genes	chr2L	9980863	intergenic	not near genes	chr2L_40_9975001	chr2L_9975001	RAL-304_100b
416	chr2L	10138164	10138186	chr2L	10143435	10143446	Rt1c	13	5267	22.0	39.0	30.5	0.4	5282	chr2L	10138164	intron	CG44153 -	chr2L	10140805	intron	CG44153 -	chr2L	10143446	intron	CG44153 -	chr2L_13_10140001	chr2L_10140001	RAL-304_100b
419	chr2L	10156297	10156305	chr2L	10163792	10163800	blood	7	7495	38.0	16.0	27.0	0.2	7503	chr2L	10156297	intron,3` UTR	CG44153 -,CG4839 +	chr2L	10160048	intron	CG44153 -	chr2L	10163800	intron	CG44153 -	chr2L_7_10160001	chr2L_10160001	RAL-304_100b
420	chr2L	10156306	10156355	chr2L	10163791	10163833	blood	35	7491	15.5	16.0	15.8	2.1	7527	chr2L	10156306	intron,3` UTR	CG44153 -,CG4839 +	chr2L	10160070	intron	CG44153 -	chr2L	10163833	intron	CG44153 -	chr2L_35_10160001	chr2L_10160001	RAL-304_100b
445	chr2L	10592822	10592874	chr2L	10600502	10600541	opus	48	7683	6.0	5.5	5.8	7.1	7719	chr2L	10592822	intron	Trim9 +	chr2L	10596682	intron	Trim9 +	chr2L	10600541	intron	Trim9 +	chr2L_48_10595001	chr2L_10595001	RAL-304_100b
459	chr2L	10862833	10862857	chr2L	10864459	10864496	Rt1c	29	1630	16.5	31.0	23.8	1.2	1663	chr2L	10862833	3` UTR	CR43807 -	chr2L	10863664	intron	CR43807 -	chr2L	10864496	3` UTR	CR43807 -	chr2L_29_10860001	chr2L_10860001	RAL-304_100b
460	chr2L	10862862	10862877	chr2L	10864455	10864497	Rt1c	19	1627	10.0	26.0	18.0	1.0	1635	chr2L	10862862	3` UTR	CR43807 -	chr2L	10863680	intron	CR43807 -	chr2L	10864497	3` UTR	CR43807 -	chr2L_19_10860001	chr2L_10860001	RAL-304_100b
461	chr2L	10876552	10876572	chr2L	10883631	10883653	297	10	7079	16.0	4.0	10.0	0.9	7101	chr2L	10876552	intergenic	not near genes	chr2L	10880102	intergenic	not near genes	chr2L	10883653	intergenic	not near genes	chr2L_10_10880001	chr2L_10880001	RAL-304_100b
462	chr2L	10946929	10946933	chr2L	10956166	10956173	roo	4	9239	62.0	34.5	48.2	0.1	9244	chr2L	10946929	intron	dpr2 -	chr2L	10951551	intron	dpr2 -	chr2L	10956173	intron	dpr2 -	chr2L_4_10950001	chr2L_10950001	RAL-304_100b
463	chr2L	10946935	10946951	chr2L	10956165	10956191	roo	23	9238	52.5	33.0	42.8	0.5	9256	chr2L	10946935	intron	dpr2 -	chr2L	10951563	intron	dpr2 -	chr2L	10956191	intron	dpr2 -	chr2L_23_10950001	chr2L_10950001	RAL-304_100b
464	chr2L	10946952	10946962	chr2L	10956162	10956199	roo	22	9232	45.0	30.5	37.8	0.6	9247	chr2L	10946952	intron	dpr2 -	chr2L	10951576	intron	dpr2 -	chr2L	10956199	intron	dpr2 -	chr2L_22_10950001	chr2L_10950001	RAL-304_100b
465	chr2L	10946963	10946971	chr2L	10956160	10956211	roo	8	9233	43.0	29.0	36.0	0.2	9248	chr2L	10946963	intron	dpr2 -	chr2L	10951587	intron	dpr2 -	chr2L	10956211	intron	dpr2 -	chr2L_8_10950001	chr2L_10950001	RAL-304_100b
472	chr2L	11315245	11315272	chr2L	11317674	11317701	G2	23	2422	19.0	13.0	16.0	1.4	2456	chr2L	11315245	intergenic	not near genes	chr2L	11316473	intergenic	not near genes	chr2L	11317701	intergenic	not near genes	chr2L_23_11315001	chr2L_11315001	RAL-304_100b
485	chr2L	11540560	11540611	chr2L	11547987	11548038	Tabor	14	7423	6.5	11.0	8.8	1.4	7478	chr2L	11540560	intergenic	not near genes	chr2L	11544299	intergenic	not near genes	chr2L	11548038	intergenic	not near genes	chr2L_14_11540001	chr2L_11540001	RAL-304_100b
486	chr2L	11563614	11563668	chr2L	11568843	11568897	copia	37	5225	15.0	10.5	12.8	2.7	5283	chr2L	11563614	intergenic	not near genes	chr2L	11566256	intergenic	not near genes	chr2L	11568897	intergenic	not near genes	chr2L_37_11565001	chr2L_11565001	RAL-304_100b
492	chr2L	11614031	11614052	chr2L	11615549	11615572	hopper2	21	1516	31.5	19.0	25.2	0.8	1541	chr2L	11614031	intron	kek2 +	chr2L	11614802	intron	kek2 +	chr2L	11615572	intron	kek2 +	chr2L_21_11610001	chr2L_11610001	RAL-304_100b
493	chr2L	11614054	11614082	chr2L	11615545	11615562	hopper2	40	1503	20.5	17.5	19.0	2.0	1508	chr2L	11614054	intron	kek2 +	chr2L	11614808	intron	kek2 +	chr2L	11615562	intron	kek2 +	chr2L_40_11610001	chr2L_11610001	RAL-304_100b
497	chr2L	11713481	11713539	chr2L	11720974	11721022	blood	43	7487	14.0	15.0	14.5	2.8	7541	chr2L	11713481	intergenic	not near genes	chr2L	11717252	intergenic	not near genes	chr2L	11721022	intergenic	CR44143 +	chr2L_43_11715001	chr2L_11715001	RAL-304_100b
510	chr2L	12067306	12067329	chr2L	12074383	12074406	297	18	7076	22.0	11.5	16.8	1.0	7100	chr2L	12067306	intergenic	not near genes	chr2L	12070856	intergenic	not near genes	chr2L	12074406	intergenic	not near genes	chr2L_18_12070001	chr2L_12070001	RAL-304_100b
511	chr2L	12067330	12067358	chr2L	12074382	12074433	297	14	7071	12.5	11.0	11.8	1.1	7103	chr2L	12067330	intergenic	not near genes	chr2L	12070882	intergenic	not near genes	chr2L	12074433	intergenic	not near genes	chr2L_14_12070001	chr2L_12070001	RAL-304_100b
531	chr2L	12558293	12558353	chr2L	12565447	12565507	HMS-Beagle	40	7151	8.0	7.5	7.8	4.5	7214	chr2L	12558293	intergenic	not near genes	chr2L	12561900	intergenic	not near genes	chr2L	12565507	intergenic	not near genes	chr2L_40_12560001	chr2L_12560001	RAL-304_100b
536	chr2L	12728897	12728949	chr2L	12729162	12729214	pogo	43	261	20.0	24.0	22.0	1.9	317	chr2L	12728897	intron	MRP +	chr2L	12729056	intron	MRP +	chr2L	12729214	exon	MRP +	chr2L_43_12725001	chr2L_12725001	RAL-304_100b
537	chr2L	12731036	12731093	chr2L	12735828	12735860	F-element	54	4788	13.0	19.0	16.0	3.2	4824	chr2L	12731036	intron	MRP +	chr2L	12733448	intron	MRP +	chr2L	12735860	intron	MRP +	chr2L_54_12730001	chr2L_12730001	RAL-304_100b
538	chr2L	12739152	12739199	chr2L	12743958	12744005	Doc	51	4804	31.0	28.5	29.8	1.7	4853	chr2L	12739152	exon	MRP +	chr2L	12741578	intron	MRP +	chr2L	12744005	exon	MRP +	chr2L_51_12740001	chr2L_12740001	RAL-304_100b
542	chr2L	12763807	12763872	chr2L	12764041	12764074	BS	7	223	0.0	0.0	0.0	7.0	267	chr2L	12763807	intergenic	not near genes	chr2L	12763940	intergenic	not near genes	chr2L	12764074	intergenic	not near genes	chr2L_7_12760001	chr2L_12760001	RAL-304_100b
544	chr2L	12781777	12781815	chr2L	12789245	12789281	Quasimodo	28	7465	25.5	14.5	20.0	1.3	7504	chr2L	12781777	intergenic	not near genes	chr2L	12785529	intergenic	not near genes	chr2L	12789281	intergenic	not near genes	chr2L_28_12785001	chr2L_12785001	RAL-304_100b
545	chr2L	12791595	12791632	chr2L	12795280	12795287	F-element	32	3689	10.5	8.5	9.5	3.0	3692	chr2L	12791595	intergenic	not near genes	chr2L	12793441	intergenic	not near genes	chr2L	12795287	intergenic	not near genes	chr2L_32_12790001	chr2L_12790001	RAL-304_100b
549	chr2L	12861679	12861730	chr2L	12863162	12863201	hobo	69	1482	15.5	22.0	18.8	3.5	1522	chr2L	12861679	intergenic	not near genes	chr2L	12862440	intergenic	not near genes	chr2L	12863201	intergenic	not near genes	chr2L_69_12860001	chr2L_12860001	RAL-304_100b
550	chr2L	12893998	12894039	chr2L	12895488	12895531	hobo	33	1487	23.0	31.0	27.0	1.2	1533	chr2L	12893998	intergenic	not near genes	chr2L	12894764	intergenic	not near genes	chr2L	12895531	intergenic	not near genes	chr2L_33_12890001	chr2L_12890001	RAL-304_100b
551	chr2L	12894040	12894051	chr2L	12895485	12895523	hobo	15	1479	18.5	29.5	24.0	0.6	1483	chr2L	12894040	intergenic	not near genes	chr2L	12894782	intergenic	not near genes	chr2L	12895523	intergenic	not near genes	chr2L_15_12890001	chr2L_12890001	RAL-304_100b
553	chr2L	12933826	12933882	chr2L	12941315	12941353	blood	58	7488	17.0	17.5	17.2	3.2	7527	chr2L	12933826	intergenic	not near genes	chr2L	12937590	intergenic	not near genes	chr2L	12941353	intergenic	not near genes	chr2L_58_12935001	chr2L_12935001	RAL-304_100b
560	chr2L	13241933	13241983	chr2L	13244342	13244347	BS	20	2405	24.0	22.0	23.0	0.8	2414	chr2L	13241933	5` UTR	CR45330 +	chr2L	13243140	intron	CR45330 +	chr2L	13244347	5` UTR	CR45330 +	chr2L_20_13240001	chr2L_13240001	RAL-304_100b
565	chr2L	13405622	13405677	chr2L	13410444	13410468	Doc	59	4818	20.5	15.5	18.0	3.1	4846	chr2L	13405622	exon	CG7110 +	chr2L	13408045	intron	CG7110 +	chr2L	13410468	intron	CG7110 +	chr2L_59_13405001	chr2L_13405001	RAL-304_100b
566	chr2L	13449447	13449494	chr2L	13456908	13456955	Quasimodo	25	7460	13.0	17.5	15.2	1.5	7508	chr2L	13449447	intron,5` UTR	CG42784 +,Hsp60D -	chr2L	13453201	intron	CG42784 +	chr2L	13456955	intron	CG42784 +	chr2L_25_13450001	chr2L_13450001	RAL-304_100b
567	chr2L	13481437	13481473	chr2L	13482064	13482105	jockey	29	628	19.0	26.0	22.5	1.2	668	chr2L	13481437	intron	CG42784 +	chr2L	13481771	intron	CG42784 +	chr2L	13482105	intron	CG42784 +	chr2L_29_13480001	chr2L_13480001	RAL-304_100b
568	chr2L	13522108	13522165	chr2L	13527651	13527690	Transpac	33	5539	4.5	13.5	9.0	3.3	5582	chr2L	13522108	intron	B4 -	chr2L	13524899	intron	B4 -	chr2L	13527690	intron	B4 -	chr2L_33_13520001	chr2L_13520001	RAL-304_100b
572	chr2L	13560385	13560421	chr2L	13565230	13565266	F-element	22	4844	12.0	8.0	10.0	2.0	4881	chr2L	13560385	intron	kuz +	chr2L	13562826	intron	kuz +	chr2L	13565266	intron	kuz +	chr2L_22_13560001	chr2L_13560001	RAL-304_100b
586	chr2L	13761779	13761797	chr2L	13762915	13762929	Doc	16	1135	28.5	12.5	20.5	0.7	1150	chr2L	13761779	intron	TM9SF4 +	chr2L	13762354	intron	TM9SF4 +	chr2L	13762929	intron	TM9SF4 +	chr2L_16_13760001	chr2L_13760001	RAL-304_100b
587	chr2L	13761798	13761835	chr2L	13762911	13762956	Doc	20	1128	12.0	11.0	11.5	1.6	1158	chr2L	13761798	intron	TM9SF4 +	chr2L	13762377	intron	TM9SF4 +	chr2L	13762956	intron	TM9SF4 +	chr2L_20_13760001	chr2L_13760001	RAL-304_100b
590	chr2L	13853064	13853082	chr2L	13862239	13862257	roo	11	9175	19.5	11.5	15.5	0.7	9193	chr2L	13853064	intron	CenG1A +	chr2L	13857660	intron	CenG1A +	chr2L	13862257	intron	CenG1A +	chr2L_11_13855001	chr2L_13855001	RAL-304_100b
591	chr2L	13853083	13853117	chr2L	13862236	13862267	roo	28	9168	11.0	10.5	10.8	2.4	9184	chr2L	13853083	intron	CenG1A +	chr2L	13857675	intron	CenG1A +	chr2L	13862267	intron	CenG1A +	chr2L_28_13855001	chr2L_13855001	RAL-304_100b
623	chr2L	14642545	14642604	chr2L	14651733	14651792	roo	15	9186	7.0	13.0	10.0	1.4	9247	chr2L	14642545	intron	osp -	chr2L	14647168	intron	osp -	chr2L	14651792	intron	osp -	chr2L_15_14645001	chr2L_14645001	RAL-304_100b
628	chr2L	14889927	14889981	chr2L	14890377	14890431	jockey	51	448	12.0	12.0	12.0	3.9	504	chr2L	14889927	intergenic	not near genes	chr2L	14890179	intergenic	not near genes	chr2L	14890431	intergenic	not near genes	chr2L_51_14890001	chr2L_14890001	RAL-304_100b
629	chr2L	14984363	14984380	chr2L	14991990	14992003	opus	13	7625	26.5	14.5	20.5	0.6	7640	chr2L	14984363	intron	mol -	chr2L	14988183	intron	mol -	chr2L	14992003	intron	mol -	chr2L_13_14985001	chr2L_14985001	RAL-304_100b
630	chr2L	14984390	14984405	chr2L	14991983	14992034	opus	5	7622	16.0	11.0	13.5	0.3	7644	chr2L	14984390	intron	mol -	chr2L	14988212	intron	mol -	chr2L	14992034	intron	mol -	chr2L_5_14985001	chr2L_14985001	RAL-304_100b
644	chr2L	15446026	15446084	chr2L	15453519	15453532	blood	36	7491	8.5	7.5	8.0	4.0	7506	chr2L	15446026	intergenic	not near genes	chr2L	15449779	intergenic	not near genes	chr2L	15453532	intergenic	not near genes	chr2L_36_15445001	chr2L_15445001	RAL-304_100b
651	chr2L	15586385	15586437	chr2L	15593462	15593514	297	39	7074	15.5	13.5	14.5	2.5	7129	chr2L	15586385	intergenic	not near genes	chr2L	15589950	intergenic	not near genes	chr2L	15593514	intergenic	not near genes	chr2L_39_15585001	chr2L_15585001	RAL-304_100b
659	chr2L	15773547	15773583	chr2L	15773653	15773689	INE-1	16	106	3.0	12.0	7.5	1.9	142	chr2L	15773547	intergenic	CG31826 -	chr2L	15773618	intergenic	not near genes	chr2L	15773689	intergenic	not near genes	chr2L_16_15770001	chr2L_15770001	RAL-304_100b
665	chr2L	15826871	15826893	chr2L	15829290	15829312	Tabor	8	2419	0.0	12.5	6.2	1.1	2441	chr2L	15826871	intergenic	not near genes	chr2L	15828092	intergenic	not near genes	chr2L	15829312	intergenic	not near genes	chr2L_8_15825001	chr2L_15825001	RAL-304_100b
674	chr2L	15956000	15956005	chr2L	15957492	15957496	hobo	5	1492	29.5	24.0	26.8	0.2	1496	chr2L	15956000	intron	beat-Ib -	chr2L	15956748	intron	beat-Ib -	chr2L	15957496	intron	beat-Ib -	chr2L_5_15955001	chr2L_15955001	RAL-304_100b
675	chr2L	15956009	15956026	chr2L	15957491	15957513	hobo	9	1487	21.0	23.5	22.2	0.4	1504	chr2L	15956009	intron	beat-Ib -	chr2L	15956761	intron	beat-Ib -	chr2L	15957513	intron	beat-Ib -	chr2L_9_15955001	chr2L_15955001	RAL-304_100b
676	chr2L	15956027	15956057	chr2L	15957489	15957511	hobo	17	1481	17.0	22.0	19.5	0.8	1484	chr2L	15956027	intron	beat-Ib -	chr2L	15956769	intron	beat-Ib -	chr2L	15957511	intron	beat-Ib -	chr2L_17_15955001	chr2L_15955001	RAL-304_100b
682	chr2L	16071771	16071771	chr2L	16217660	16217660	copia	75	145889	84.0	75.0	79.5	0.9	145889	chr2L	16071771	intron	beat-Ia +	chr2L	16144716	intergenic	not near genes	chr2L	16217660	intergenic	not near genes	chr2L_75_16140001	chr2L_16140001	RAL-304_100b
683	chr2L	16141140	16141194	chr2L	16146372	16146392	copia	39	5230	6.0	10.5	8.2	4.2	5252	chr2L	16141140	intergenic	not near genes	chr2L	16143766	intergenic	not near genes	chr2L	16146392	intergenic	not near genes	chr2L_39_16140001	chr2L_16140001	RAL-304_100b
684	chr2L	16153728	16153762	chr2L	16160812	16160855	297	23	7092	10.5	11.0	10.8	1.9	7127	chr2L	16153728	intergenic	not near genes	chr2L	16157292	intergenic	not near genes	chr2L	16160855	intergenic	not near genes	chr2L_23_16155001	chr2L_16155001	RAL-304_100b
690	chr2L	16071771	16071771	chr2L	16217660	16217660	copia	57	145889	84.0	75.0	79.5	0.7	145889	chr2L	16071771	intron	beat-Ia +	chr2L	16144716	intergenic	not near genes	chr2L	16217660	intergenic	not near genes	chr2L_57_16140001	chr2L_16140001	RAL-304_100b
694	chr2L	16280235	16280241	chr2L	16281428	16281437	1360	8	1195	53.0	24.0	38.5	0.2	1202	chr2L	16280235	intron	crp -	chr2L	16280836	intron	crp -	chr2L	16281437	intron	crp -	chr2L_8_16280001	chr2L_16280001	RAL-304_100b
695	chr2L	16280242	16280286	chr2L	16281425	16281467	1360	47	1190	20.0	23.0	21.5	2.1	1225	chr2L	16280242	intron	crp -	chr2L	16280854	intron	crp -	chr2L	16281467	intron	crp -	chr2L_47_16280001	chr2L_16280001	RAL-304_100b
708	chr2L	16511960	16511995	chr2L	16519112	16519147	HMS-Beagle	10	7151	6.0	6.5	6.2	1.4	7187	chr2L	16511960	intron	CG5953 -	chr2L	16515554	intron	CG5953 -	chr2L	16519147	intron	CG5953 -	chr2L_10_16515001	chr2L_16515001	RAL-304_100b
733	chr2L	16958087	16958095	chr2L	16962900	16962908	Doc	4	4813	17.0	12.5	14.8	0.3	4821	chr2L	16958087	intergenic	not near genes	chr2L	16960498	intergenic	not near genes	chr2L	16962908	intergenic	not near genes	chr2L_4_16960001	chr2L_16960001	RAL-304_100b
734	chr2L	16958096	16958133	chr2L	16962899	16962946	Doc	21	4811	7.0	12.5	9.8	1.9	4850	chr2L	16958096	intergenic	not near genes	chr2L	16960521	intergenic	not near genes	chr2L	16962946	intergenic	not near genes	chr2L_21_16960001	chr2L_16960001	RAL-304_100b
755	chr2L	17167540	17167596	chr2L	17167806	17167813	pogo	33	262	13.0	8.5	10.8	2.8	273	chr2L	17167540	intron,intron	CG34106 +,beat-IIIa +	chr2L	17167676	intron,intron	CG34106 +,beat-IIIa +	chr2L	17167813	intron,intron	CG34106 +,beat-IIIa +	chr2L_33_17165001	chr2L_17165001	RAL-304_100b
756	chr2L	17199150	17199191	chr2L	17200637	17200683	hobo	12	1490	12.5	9.5	11.0	1.0	1533	chr2L	17199150	intron	beat-IIIc -	chr2L	17199916	intron	beat-IIIc -	chr2L	17200683	intron	beat-IIIc -	chr2L_12_17195001	chr2L_17195001	RAL-304_100b
761	chr2L	17273173	17273189	chr2L	17277977	17277987	F-element	15	4807	29.0	16.5	22.8	0.6	4814	chr2L	17273173	intergenic	not near genes	chr2L	17275580	intergenic	not near genes	chr2L	17277987	intergenic	not near genes	chr2L_15_17275001	chr2L_17275001	RAL-304_100b
762	chr2L	17273190	17273226	chr2L	17277972	17278002	F-element	33	4802	9.5	14.0	11.8	2.6	4812	chr2L	17273190	intergenic	not near genes	chr2L	17275596	intergenic	not near genes	chr2L	17278002	intergenic	not near genes	chr2L_33_17275001	chr2L_17275001	RAL-304_100b
772	chr2L	17432018	17432035	chr2L	17432140	17432167	1360	10	130	0.0	7.0	3.5	2.2	149	chr2L	17432018	intron	Dif -	chr2L	17432092	intron	Dif -	chr2L	17432167	intron	Dif -	chr2L_10_17430001	chr2L_17430001	RAL-304_100b
781	chr2L	17687495	17687500	chr2L	17692265	17692270	F-element	5	4770	11.5	13.0	12.2	0.4	4775	chr2L	17687495	intron	CadN -	chr2L	17689882	intron	CadN -	chr2L	17692270	intron	CadN -	chr2L_5_17685001	chr2L_17685001	RAL-304_100b
782	chr2L	17687501	17687522	chr2L	17692263	17692292	F-element	12	4768	5.0	12.5	8.8	1.2	4791	chr2L	17687501	intron	CadN -	chr2L	17689896	intron	CadN -	chr2L	17692292	intron	CadN -	chr2L_12_17685001	chr2L_17685001	RAL-304_100b
786	chr2L	17727854	17727859	chr2L	17729335	17729351	hobo	4	1489	21.0	23.0	22.0	0.2	1497	chr2L	17727854	intron	CadN -	chr2L	17728602	intron	CadN -	chr2L	17729351	intron	CadN -	chr2L_4_17725001	chr2L_17725001	RAL-304_100b
787	chr2L	17727865	17727871	chr2L	17729342	17729347	hobo	10	1486	16.5	25.5	21.0	0.5	1482	chr2L	17727865	intron	CadN -	chr2L	17728606	intron	CadN -	chr2L	17729347	intron	CadN -	chr2L_10_17725001	chr2L_17725001	RAL-304_100b
790	chr2L	17819899	17819951	chr2L	17825127	17825179	copia	40	5226	11.0	16.5	13.8	2.7	5280	chr2L	17819899	intron	CadN2 -	chr2L	17822539	intron	CadN2 -	chr2L	17825179	intron	CadN2 -	chr2L_40_17820001	chr2L_17820001	RAL-304_100b
793	chr2L	17911937	17911947	chr2L	17914140	17914143	pogo	6	2202	33.5	12.5	23.0	0.2	2206	chr2L	17911937	intergenic	not near genes	chr2L	17913040	intergenic	not near genes	chr2L	17914143	intergenic	CG43271 -	chr2L_6_17910001	chr2L_17910001	RAL-304_100b
794	chr2L	17911951	17911988	chr2L	17914138	17914191	pogo	25	2201	13.5	11.5	12.5	1.9	2240	chr2L	17911951	intergenic	not near genes	chr2L	17913071	intergenic	not near genes	chr2L	17914191	intergenic	CG43271 -	chr2L_25_17910001	chr2L_17910001	RAL-304_100b
798	chr2L	17951918	17951974	chr2L	17953410	17953466	hobo	43	1491	14.0	12.0	13.0	3.1	1548	chr2L	17951918	intergenic	CR44398 -,CR44397 -	chr2L	17952692	intergenic	not near genes	chr2L	17953466	intergenic	not near genes	chr2L_43_17950001	chr2L_17950001	RAL-304_100b
801	chr2L	18051860	18051905	chr2L	18061022	18061031	roo	33	9163	18.5	13.0	15.8	2.0	9171	chr2L	18051860	intron	rdo +	chr2L	18056446	intron	rdo +	chr2L	18061031	intron	rdo +	chr2L_33_18055001	chr2L_18055001	RAL-304_100b
816	chr2L	18408004	18408060	chr2L	18412813	18412877	Doc	27	4807	9.5	0.0	4.8	4.7	4873	chr2L	18408004	intergenic	not near genes	chr2L	18410440	intergenic	not near genes	chr2L	18412877	intergenic	not near genes	chr2L_27_18410001	chr2L_18410001	RAL-304_100b
837	chr2L	19147281	19147292	chr2L	19154403	19154414	297	7	7122	11.5	12.0	11.8	0.5	7133	chr2L	19147281	intron	brat +	chr2L	19150848	intron	brat +	chr2L	19154414	intron	brat +	chr2L_7_19150001	chr2L_19150001	RAL-304_100b
838	chr2L	19147298	19147398	chr2L	19154412	19154457	297	16	7072	0.0	15.5	7.8	1.8	7159	chr2L	19147298	intron	brat +	chr2L	19150878	intron	brat +	chr2L	19154457	intron	brat +	chr2L_16_19150001	chr2L_19150001	RAL-304_100b
842	chr2L	19344996	19345003	chr2L	19357228	19357237	blood	5	12231	39.5	20.5	30.0	0.2	12241	chr2L	19344996	intron	dnt -	chr2L	19351116	intron	dnt -	chr2L	19357237	intron	dnt -	chr2L_5_19350001	chr2L_19350001	RAL-304_100b
843	chr2L	19345006	19345049	chr2L	19357226	19357234	blood	51	12228	13.5	19.5	16.5	2.9	12228	chr2L	19345006	intron	dnt -	chr2L	19351120	intron	dnt -	chr2L	19357234	intron	dnt -	chr2L_51_19350001	chr2L_19350001	RAL-304_100b
858	chr2L	19620070	19620085	chr2L	19621084	19621099	jockey	15	1013	47.0	13.5	30.2	0.5	1029	chr2L	19620070	intron	Lar +	chr2L	19620584	intron	Lar +	chr2L	19621099	intron	Lar +	chr2L_15_19620001	chr2L_19620001	RAL-304_100b
859	chr2L	19620086	19620128	chr2L	19621078	19621142	jockey	48	1007	23.0	13.0	18.0	2.5	1056	chr2L	19620086	intron	Lar +	chr2L	19620614	intron	Lar +	chr2L	19621142	intron	Lar +	chr2L_48_19620001	chr2L_19620001	RAL-304_100b
860	chr2L	19652545	19652604	chr2L	19674006	19674045	opus	37	21458	10.0	11.5	10.8	3.1	21500	chr2L	19652545	intron	Lar +	chr2L	19663295	intron	Lar +	chr2L	19674045	intron	Lar +	chr2L_37_19660001	chr2L_19660001	RAL-304_100b
861	chr2L	19703517	19703549	chr2L	19712678	19712706	roo	28	9157	27.5	10.5	19.0	1.4	9189	chr2L	19703517	intron	Lar +	chr2L	19708112	intron	Lar +	chr2L	19712706	intron	Lar +	chr2L_28_19705001	chr2L_19705001	RAL-304_100b
862	chr2L	19703550	19703568	chr2L	19712676	19712728	roo	23	9152	19.0	10.5	14.8	1.5	9178	chr2L	19703550	intron	Lar +	chr2L	19708139	intron	Lar +	chr2L	19712728	intron	Lar +	chr2L_23_19705001	chr2L_19705001	RAL-304_100b
863	chr2L	19737329	19737388	chr2L	19740823	19740882	1360	65	3483	10.5	10.5	10.5	5.7	3553	chr2L	19737329	intergenic	Nf-YB +	chr2L	19739106	intergenic	not near genes	chr2L	19740882	intergenic	not near genes	chr2L_65_19735001	chr2L_19735001	RAL-304_100b
865	chr2L	19762786	19762836	chr2L	19763049	19763103	pogo	41	264	24.5	11.5	18.0	2.2	317	chr2L	19762786	exon	fbp -	chr2L	19762944	intron	fbp -	chr2L	19763103	intron	fbp -	chr2L_41_19760001	chr2L_19760001	RAL-304_100b
876	chr2L	20005849	20005869	chr2L	20010950	20010970	flea	12	5100	17.0	16.0	16.5	0.7	5121	chr2L	20005849	intron	CG43861 -	chr2L	20008410	intron	CG43861 -	chr2L	20010970	intron	CG43861 -	chr2L_12_20005001	chr2L_20005001	RAL-304_100b
877	chr2L	20005870	20005903	chr2L	20010947	20011004	flea	35	5097	8.5	14.5	11.5	2.8	5134	chr2L	20005870	intron	CG43861 -	chr2L	20008437	intron	CG43861 -	chr2L	20011004	intron	CG43861 -	chr2L_35_20005001	chr2L_20005001	RAL-304_100b
888	chr2L	20272089	20272126	chr2L	20282825	20282862	copia	28	10735	14.5	15.0	14.8	1.8	10773	chr2L	20272089	intergenic	not near genes	chr2L	20277476	intergenic	not near genes	chr2L	20282862	intergenic	not near genes	chr2L_28_20275001	chr2L_20275001	RAL-304_100b
889	chr2L	20272127	20272142	chr2L	20282822	20282857	copia	17	10732	10.0	13.5	11.8	1.3	10730	chr2L	20272127	intergenic	not near genes	chr2L	20277492	intergenic	not near genes	chr2L	20282857	intergenic	not near genes	chr2L_17_20275001	chr2L_20275001	RAL-304_100b
894	chr2L	20303164	20303187	chr2L	20310647	20310680	blood	10	7490	2.5	17.0	9.8	0.9	7516	chr2L	20303164	intergenic	not near genes	chr2L	20306922	intergenic	not near genes	chr2L	20310680	intergenic	not near genes	chr2L_10_20305001	chr2L_20305001	RAL-304_100b
899	chr2L	20372204	20372246	chr2L	20372468	20372512	pogo	27	265	1.5	25.0	13.2	1.9	308	chr2L	20372204	intergenic	Ugt37a1 -	chr2L	20372358	intergenic	Ugt37a1 -	chr2L	20372512	exon	Ugt37a1 -	chr2L_27_20370001	chr2L_20370001	RAL-304_100b
901	chr2L	20407783	20407798	chr2L	20412925	20412935	flea	6	5143	15.5	7.0	11.2	0.5	5152	chr2L	20407783	intron	CG10947 -	chr2L	20410359	intron	CG10947 -	chr2L	20412935	intron	CG10947 -	chr2L_6_20410001	chr2L_20410001	RAL-304_100b
907	chr2L	20568636	20568687	chr2L	20569050	20569103	X-element	37	413	11.0	10.5	10.8	3.1	467	chr2L	20568636	intron	CR45347 +	chr2L	20568870	intron	CR45347 +	chr2L	20569103	intron	CR45347 +	chr2L_37_20565001	chr2L_20565001	RAL-304_100b
908	chr2L	20576196	20576203	chr2L	20583689	20583696	blood	5	7492	22.0	11.5	16.8	0.3	7500	chr2L	20576196	intergenic	CR45347 +	chr2L	20579946	intergenic	not near genes	chr2L	20583696	3` UTR	CR44909 -	chr2L_5_20575001	chr2L_20575001	RAL-304_100b
909	chr2L	20576204	20576250	chr2L	20583687	20583743	blood	46	7486	9.5	10.5	10.0	4.2	7539	chr2L	20576204	intergenic	CR45347 +	chr2L	20579974	intergenic	not near genes	chr2L	20583743	3` UTR	CR44909 -	chr2L_46_20575001	chr2L_20575001	RAL-304_100b
919	chr2L	20835794	20835838	chr2L	20836531	20836580	Quasimodo	29	740	12.0	10.0	11.0	2.4	786	chr2L	20835794	5` UTR	Oseg5 -	chr2L	20836187	intergenic	Oseg5 -,Spn38F -	chr2L	20836580	intergenic	Spn38F -	chr2L_29_20835001	chr2L_20835001	RAL-304_100b
920	chr2L	20891512	20891522	chr2L	20896638	20896648	jockey	7	5125	16.5	9.5	13.0	0.5	5136	chr2L	20891512	intron,intron	CG43739 -,sky -	chr2L	20894080	intron,intron	CG43739 -,sky -	chr2L	20896648	intron,intron	CG43739 -,sky -	chr2L_7_20890001	chr2L_20890001	RAL-304_100b
921	chr2L	20891523	20891546	chr2L	20896637	20896672	jockey	11	5122	5.5	8.5	7.0	1.4	5149	chr2L	20891523	intron,intron	CG43739 -,sky -	chr2L	20894098	intron,intron	CG43739 -,sky -	chr2L	20896672	intron,intron	CG43739 -,sky -	chr2L_11_20890001	chr2L_20890001	RAL-304_100b
922	chr2L	20901430	20901485	chr2L	20902619	20902638	1360	22	1183	14.5	20.0	17.2	1.2	1208	chr2L	20901430	intron,intron	CG43739 -,sky -	chr2L	20902034	intron,intron	CG43739 -,sky -	chr2L	20902638	intron,intron	CG43739 -,sky -	chr2L_22_20900001	chr2L_20900001	RAL-304_100b
925	chr2L	20976626	20976672	chr2L	20981466	20981502	X-element	40	4835	13.0	14.5	13.8	2.7	4876	chr2L	20976626	intron	CG42238 -	chr2L	20979064	intron	CG42238 -	chr2L	20981502	intron	CG42238 -	chr2L_40_20975001	chr2L_20975001	RAL-304_100b
926	chr2L	21020255	21020266	chr2L	21023954	21023968	NOF	6	3702	29.5	17.5	23.5	0.2	3713	chr2L	21020255	intron	CG42238 -	chr2L	21022112	intron	CG42238 -	chr2L	21023968	intron	CG42238 -	chr2L_6_21020001	chr2L_21020001	RAL-304_100b
927	chr2L	21020269	21020292	chr2L	21023953	21023969	NOF	17	3697	21.0	17.0	19.0	0.8	3700	chr2L	21020269	intron	CG42238 -	chr2L	21022119	intron	CG42238 -	chr2L	21023969	intron	CG42238 -	chr2L_17_21020001	chr2L_21020001	RAL-304_100b
928	chr2L	21020294	21020305	chr2L	21023952	21024007	NOF	8	3687	15.5	16.5	16.0	0.5	3713	chr2L	21020294	intron	CG42238 -	chr2L	21022150	intron	CG42238 -	chr2L	21024007	intron	CG42238 -	chr2L_8_21020001	chr2L_21020001	RAL-304_100b
929	chr2L	21041114	21041150	chr2L	21049399	21049436	Tirant	28	8284	16.5	13.5	15.0	1.8	8322	chr2L	21041114	intron	CG42238 -	chr2L	21045275	intron	CG42238 -	chr2L	21049436	intron	CG42238 -	chr2L_28_21045001	chr2L_21045001	RAL-304_100b
930	chr2L	21041154	21041167	chr2L	21049395	21049443	Tirant	14	8276	9.5	12.0	10.8	1.2	8289	chr2L	21041154	intron	CG42238 -	chr2L	21045298	intron	CG42238 -	chr2L	21049443	intron	CG42238 -	chr2L_14_21045001	chr2L_21045001	RAL-304_100b
933	chr2L	21347543	21347583	chr2L	21355020	21355081	blood	15	7496	9.5	3.0	6.2	2.1	7538	chr2L	21347543	intron	Tsp39D +	chr2L	21351312	intron	Tsp39D +	chr2L	21355081	intron	Tsp39D +	chr2L_15_21350001	chr2L_21350001	RAL-304_100b
936	chr2L	21597026	21597047	chr2L	21604783	21604816	roo	16	7765	1.5	15.5	8.5	1.7	7790	chr2L	21597026	intergenic	not near genes	chr2L	21600921	intergenic	not near genes	chr2L	21604816	intergenic	not near genes	chr2L_16_21600001	chr2L_21600001	RAL-304_100b
937	chr2L	21597049	21597058	chr2L	21604779	21604827	roo	9	7762	1.5	14.5	8.0	1.0	7778	chr2L	21597049	intergenic	not near genes	chr2L	21600938	intergenic	not near genes	chr2L	21604827	intergenic	not near genes	chr2L_9_21600001	chr2L_21600001	RAL-304_100b
938	chr2L	21653168	21653223	chr2L	21656497	21656552	invader4	32	3327	10.5	4.5	7.5	3.8	3384	chr2L	21653168	intergenic	not near genes	chr2L	21654860	intergenic	not near genes	chr2L	21656552	intergenic	not near genes	chr2L_32_21650001	chr2L_21650001	RAL-304_100b
939	chr2L	21691802	21691817	chr2L	21698297	21698312	Burdock	6	6495	13.0	2.0	7.5	0.7	6510	chr2L	21691802	intron	CG31619 +	chr2L	21695057	intron	CG31619 +	chr2L	21698312	intron	CG31619 +	chr2L_6_21695001	chr2L_21695001	RAL-304_100b
940	chr2L	21691821	21691855	chr2L	21698295	21698327	Burdock	13	6486	7.5	2.0	4.8	2.2	6506	chr2L	21691821	intron	CG31619 +	chr2L	21695074	intron	CG31619 +	chr2L	21698327	intron	CG31619 +	chr2L_13_21695001	chr2L_21695001	RAL-304_100b
956	chr2L	21981664	21981682	chr2L	21990850	21990872	roo	13	9189	24.5	20.0	22.2	0.6	9208	chr2L	21981664	exon	CG2528 -	chr2L	21986268	intron	CG2528 -	chr2L	21990872	exon	CG2528 -	chr2L_13_21985001	chr2L_21985001	RAL-304_100b
957	chr2L	21981683	21981713	chr2L	21990848	21990888	roo	25	9181	13.5	18.5	16.0	1.5	9205	chr2L	21981683	exon	CG2528 -	chr2L	21986286	intron	CG2528 -	chr2L	21990888	exon	CG2528 -	chr2L_25_21985001	chr2L_21985001	RAL-304_100b
969	chr2L	22258587	22258593	chr2L	22260737	22260743	G6	8	2150	27.5	13.5	20.5	0.4	2156	chr2L	22258587	intergenic	Tif-IA +	chr2L	22259665	intergenic	not near genes	chr2L	22260743	intergenic	not near genes	chr2L_8_22255001	chr2L_22255001	RAL-304_100b
970	chr2L	22258596	22258635	chr2L	22260735	22260785	G6	21	2145	8.5	12.5	10.5	1.8	2189	chr2L	22258596	intergenic	Tif-IA +	chr2L	22259690	intergenic	not near genes	chr2L	22260785	intergenic	not near genes	chr2L_21_22255001	chr2L_22255001	RAL-304_100b
973	chr2L	22548922	22548923	chr2L	22550171	22550173	1360	5	1250	1.5	21.0	11.2	0.4	1251	chr2L	22548922	intergenic	CG17490 +	chr2L	22549548	intergenic	not near genes	chr2L	22550173	intergenic	CG17493 +	chr2L_5_22545001	chr2L_22545001	RAL-304_100b
974	chr2L	22548924	22548929	chr2L	22550169	22550179	1360	5	1249	0.0	21.0	10.5	0.4	1255	chr2L	22548924	intergenic	CG17490 +	chr2L	22549552	intergenic	not near genes	chr2L	22550179	intergenic	CG17493 +	chr2L_5_22545001	chr2L_22545001	RAL-304_100b
975	chr2L	22548931	22548940	chr2L	22550146	22550190	1360	13	1241	0.0	13.5	6.8	1.7	1259	chr2L	22548931	intergenic	CG17490 +	chr2L	22549560	intergenic	not near genes	chr2L	22550190	intergenic	CG17493 +	chr2L_13_22545001	chr2L_22545001	RAL-304_100b
976	chr2L	22581950	22581989	chr2L	22583764	22583798	S-element	21	1811	12.5	10.0	11.2	1.7	1848	chr2L	22581950	intron	CG17494 +	chr2L	22582874	intron	CG17494 +	chr2L	22583798	intron	CG17494 +	chr2L_21_22580001	chr2L_22580001	RAL-304_100b
978	chr2L	22679800	22679822	chr2L	22684582	22684605	F-element	25	4793	11.0	22.0	16.5	1.4	4805	chr2L	22679800	intron	CG40006 -	chr2L	22682202	intron	CG40006 -	chr2L	22684605	intron	CG40006 -	chr2L_25_22680001	chr2L_22680001	RAL-304_100b
983	chr2L	22776399	22776407	chr2L	22778213	22778221	S-element	7	1814	15.0	7.5	11.2	0.6	1822	chr2L	22776399	intergenic	not near genes	chr2L	22777310	intergenic	not near genes	chr2L	22778221	intergenic	not near genes	chr2L_7_22775001	chr2L_22775001	RAL-304_100b
984	chr2L	22776408	22776451	chr2L	22778212	22778265	S-element	20	1812	4.0	7.5	5.8	2.9	1857	chr2L	22776408	intergenic	not near genes	chr2L	22777336	intergenic	not near genes	chr2L	22778265	intergenic	not near genes	chr2L_20_22775001	chr2L_22775001	RAL-304_100b
990	chr2R	529317	529319	chr2R	537952	537969	Max-element	4	8645	31.5	25.5	28.5	0.1	8652	chr2R	529317	intron	CG40378 +	chr2R	533643	intron	CG40378 +	chr2R	537969	intron	CG40378 +	chr2R_4_530001	chr2R_530001	RAL-304_100b
991	chr2R	529320	529355	chr2R	537946	537954	Max-element	33	8642	16.5	22.0	19.2	1.6	8634	chr2R	529320	intron	CG40378 +	chr2R	533637	intron	CG40378 +	chr2R	537954	intron	CG40378 +	chr2R_33_530001	chr2R_530001	RAL-304_100b
992	chr2R	552728	552785	chr2R	553971	554002	1360	29	1224	10.0	12.0	11.0	2.4	1274	chr2R	552728	intron	CG40378 +	chr2R	553365	intron	CG40378 +	chr2R	554002	intron	CG40378 +	chr2R_29_550001	chr2R_550001	RAL-304_100b
993	chr2R	552786	552787	chr2R	553969	554000	1360	7	1208	9.5	11.0	10.2	0.6	1214	chr2R	552786	intron	CG40378 +	chr2R	553393	intron	CG40378 +	chr2R	554000	intron	CG40378 +	chr2R_7_550001	chr2R_550001	RAL-304_100b
994	chr2R	1072744	1072794	chr2R	1075064	1075114	Cr1a	21	2320	65.0	20.0	42.5	0.5	2370	chr2R	1072744	intron	rl +	chr2R	1073929	intron	rl +	chr2R	1075114	intron	rl +	chr2R_21_1070001	chr2R_1070001	RAL-304_100b
995	chr2R	1082371	1082383	chr2R	1087131	1087139	Doc	13	4780	23.5	22.0	22.8	0.5	4768	chr2R	1082371	intron	rl +	chr2R	1084755	intron	rl +	chr2R	1087139	intron	rl +	chr2R_13_1080001	chr2R_1080001	RAL-304_100b
997	chr2R	1516581	1516603	chr2R	1521334	1521356	1731	27	4752	48.5	27.5	38.0	0.7	4775	chr2R	1516581	exon	Maf1 -	chr2R	1518968	intron	Maf1 -	chr2R	1521356	5` UTR	Maf1 -	chr2R_27_1515001	chr2R_1515001	RAL-304_100b
1000	chr2R	2110482	2110494	chr2R	2118065	2118077	17.6	8	7582	25.5	6.0	15.8	0.5	7595	chr2R	2110482	intron	CG17684 -	chr2R	2114280	intron	CG17684 -	chr2R	2118077	intron	CG17684 -	chr2R_8_2110001	chr2R_2110001	RAL-304_100b
1001	chr2R	2498961	2498979	chr2R	2508133	2508151	roo	14	9171	20.0	11.0	15.5	0.8	9190	chr2R	2498961	intron	MFS17 -	chr2R	2503556	intron	MFS17 -	chr2R	2508151	intron	MFS17 -	chr2R_14_2500001	chr2R_2500001	RAL-304_100b
1002	chr2R	2498984	2499014	chr2R	2508129	2508186	roo	26	9167	9.0	11.0	10.0	2.4	9202	chr2R	2498984	intron	MFS17 -	chr2R	2503585	intron	MFS17 -	chr2R	2508186	intron	MFS17 -	chr2R_26_2500001	chr2R_2500001	RAL-304_100b
1004	chr2R	1373051	1373069	chr2R	2589324	2589342	Cr1a	5	1216274	34.5	32.0	33.2	0.1	1216291	chr2R	1373051	intron	l(2)41Ab +	chr2R	1981196	intron	CG17684 -	chr2R	2589342	intergenic	not near genes	chr2R_5_1980001	chr2R_1980001	RAL-304_100b
1005	chr2R	2875386	2875394	chr2R	2878927	2878935	HMS-Beagle	5	3540	39.5	53.5	46.5	0.1	3549	chr2R	2875386	intergenic	not near genes	chr2R	2877160	intergenic	not near genes	chr2R	2878935	intergenic	not near genes	chr2R_5_2875001	chr2R_2875001	RAL-304_100b
1008	chr2R	3144060	3144110	chr2R	3393363	3393413	Doc	16	249301	56.0	61.0	58.5	0.3	249353	chr2R	3144060	intron	CG42596 +	chr2R	3268736	intergenic	not near genes	chr2R	3393413	intergenic	not near genes	chr2R_16_3265001	chr2R_3265001	RAL-304_100b
1011	chr2R	3526623	3526634	chr2R	3531378	3531389	F-element	4	4755	8.5	7.0	7.8	0.5	4766	chr2R	3526623	intergenic	not near genes	chr2R	3529006	intergenic	not near genes	chr2R	3531389	intergenic	not near genes	chr2R_4_3525001	chr2R_3525001	RAL-304_100b
1012	chr2R	3532594	3532633	chr2R	3536062	3536101	Doc	13	3467	6.0	6.0	6.0	1.9	3507	chr2R	3532594	intergenic	not near genes	chr2R	3534348	intergenic	not near genes	chr2R	3536101	intergenic	not near genes	chr2R_13_3530001	chr2R_3530001	RAL-304_100b
1022	chr2R	4622935	4622941	chr2R	4624114	4624125	1360	4	1182	41.0	15.5	28.2	0.1	1190	chr2R	4622935	intergenic	CR44101 -	chr2R	4623530	intergenic	not near genes	chr2R	4624125	intergenic	not near genes	chr2R_4_4620001	chr2R_4620001	RAL-304_100b
1023	chr2R	4622944	4622949	chr2R	4624112	4624133	1360	11	1177	36.5	14.0	25.2	0.4	1189	chr2R	4622944	intergenic	CR44101 -	chr2R	4623538	intergenic	not near genes	chr2R	4624133	intergenic	not near genes	chr2R_11_4620001	chr2R_4620001	RAL-304_100b
1024	chr2R	4622951	4622975	chr2R	4624110	4624144	1360	18	1171	22.5	13.0	17.8	1.0	1193	chr2R	4622951	intergenic	CR44101 -	chr2R	4623548	intergenic	not near genes	chr2R	4624144	intergenic	not near genes	chr2R_18_4620001	chr2R_4620001	RAL-304_100b
1025	chr2R	4622976	4622985	chr2R	4624109	4624149	1360	11	1163	17.0	12.0	14.5	0.7	1173	chr2R	4622976	intergenic	CR44101 -	chr2R	4623562	intergenic	not near genes	chr2R	4624149	intergenic	not near genes	chr2R_11_4620001	chr2R_4620001	RAL-304_100b
1026	chr2R	4624626	4624641	chr2R	4626549	4626556	Bica	15	1928	32.0	14.5	23.2	0.6	1930	chr2R	4624626	intergenic	not near genes	chr2R	4625591	intergenic	not near genes	chr2R	4626556	intergenic	not near genes	chr2R_15_4625001	chr2R_4625001	RAL-304_100b
1027	chr2R	4624642	4624663	chr2R	4626548	4626593	Bica	18	1926	20.5	13.5	17.0	1.0	1951	chr2R	4624642	intergenic	not near genes	chr2R	4625618	intergenic	not near genes	chr2R	4626593	intergenic	not near genes	chr2R_18_4625001	chr2R_4625001	RAL-304_100b
1028	chr2R	4624665	4624671	chr2R	4626544	4626601	Bica	6	1922	16.0	13.0	14.5	0.4	1936	chr2R	4624665	intergenic	not near genes	chr2R	4625633	intergenic	not near genes	chr2R	4626601	intergenic	not near genes	chr2R_6_4625001	chr2R_4625001	RAL-304_100b
1035	chr2R	4838848	4838860	chr2R	4840396	4840408	transib2	7	1548	29.5	13.0	21.2	0.3	1560	chr2R	4838848	intergenic	not near genes	chr2R	4839628	intergenic	not near genes	chr2R	4840408	intergenic	not near genes	chr2R_7_4835001	chr2R_4835001	RAL-304_100b
1036	chr2R	4838861	4838903	chr2R	4840394	4840451	transib2	23	1545	11.5	11.0	11.2	1.9	1590	chr2R	4838861	intergenic	not near genes	chr2R	4839656	intergenic	not near genes	chr2R	4840451	intergenic	not near genes	chr2R_23_4835001	chr2R_4835001	RAL-304_100b
1037	chr2R	4870720	4870726	chr2R	4871256	4871262	R1A1-element	5	536	25.5	19.0	22.2	0.2	542	chr2R	4870720	intergenic	not near genes	chr2R	4870991	intergenic	not near genes	chr2R	4871262	intergenic	not near genes	chr2R_5_4870001	chr2R_4870001	RAL-304_100b
1038	chr2R	4870729	4870743	chr2R	4871254	4871279	R1A1-element	10	533	18.0	17.0	17.5	0.5	550	chr2R	4870729	intergenic	not near genes	chr2R	4871004	intergenic	not near genes	chr2R	4871279	intergenic	not near genes	chr2R_10_4870001	chr2R_4870001	RAL-304_100b
1054	chr2R	5417981	5418026	chr2R	5420627	5420683	Burdock	24	2653	7.0	15.0	11.0	2.0	2702	chr2R	5417981	intron	laccase2 +	chr2R	5419332	intron	laccase2 +	chr2R	5420683	intron	laccase2 +	chr2R_24_5415001	chr2R_5415001	RAL-304_100b
1057	chr2R	5543206	5543214	chr2R	5547314	5547323	invader1	7	4109	0.0	26.5	13.2	0.5	4117	chr2R	5543206	intron	CG30438 +	chr2R	5545264	intron	CG30438 +	chr2R	5547323	intron	CG30438 +	chr2R_7_5545001	chr2R_5545001	RAL-304_100b
1058	chr2R	5543218	5543221	chr2R	5547303	5547315	invader1	4	4098	0.0	21.0	10.5	0.3	4097	chr2R	5543218	intron	CG30438 +	chr2R	5545266	intron	CG30438 +	chr2R	5547315	intron	CG30438 +	chr2R_4_5545001	chr2R_5545001	RAL-304_100b
1071	chr2R	5869250	5869308	chr2R	5874351	5874409	flea	29	5099	10.5	12.5	11.5	2.3	5159	chr2R	5869250	intergenic	not near genes	chr2R	5871830	intergenic	not near genes	chr2R	5874409	intergenic	not near genes	chr2R_29_5870001	chr2R_5870001	RAL-304_100b
1076	chr2R	5902137	5902155	chr2R	5909721	5909739	17.6	11	7583	13.5	7.5	10.5	1.0	7602	chr2R	5902137	intron	CG43366 +	chr2R	5905938	intron	CG43366 +	chr2R	5909739	intron	CG43366 +	chr2R_11_5905001	chr2R_5905001	RAL-304_100b
1077	chr2R	5902156	5902191	chr2R	5909715	5909775	17.6	9	7581	7.5	6.0	6.8	1.2	7619	chr2R	5902156	intron	CG43366 +	chr2R	5905966	intron	CG43366 +	chr2R	5909775	intron	CG43366 +	chr2R_9_5905001	chr2R_5905001	RAL-304_100b
1080	chr2R	6096700	6096708	chr2R	6101919	6101931	BS	12	5220	57.5	26.5	42.0	0.3	5231	chr2R	6096700	intron	EcR -	chr2R	6099316	intron	EcR -	chr2R	6101931	intron	EcR -	chr2R_12_6095001	chr2R_6095001	RAL-304_100b
1081	chr2R	6096710	6096718	chr2R	6101918	6101941	BS	11	5219	49.0	26.0	37.5	0.3	5231	chr2R	6096710	intron	EcR -	chr2R	6099326	intron	EcR -	chr2R	6101941	intron	EcR -	chr2R_11_6095001	chr2R_6095001	RAL-304_100b
1082	chr2R	6096721	6096751	chr2R	6101912	6101958	BS	43	5211	17.0	20.5	18.8	2.2	5237	chr2R	6096721	intron	EcR -	chr2R	6099340	intron	EcR -	chr2R	6101958	intron	EcR -	chr2R_43_6095001	chr2R_6095001	RAL-304_100b
1093	chr2R	6494506	6494552	chr2R	6499293	6499339	F-element	35	4783	15.5	8.5	12.0	2.7	4833	chr2R	6494506	intergenic	not near genes	chr2R	6496922	intergenic	not near genes	chr2R	6499339	intergenic	not near genes	chr2R_35_6495001	chr2R_6495001	RAL-304_100b
1097	chr2R	6579748	6579804	chr2R	6584859	6584888	flea	50	5109	10.5	14.5	12.5	3.7	5140	chr2R	6579748	intron	jing +	chr2R	6582318	intron	jing +	chr2R	6584888	intron	jing +	chr2R_50_6580001	chr2R_6580001	RAL-304_100b
1105	chr2R	6952141	6952185	chr2R	6959746	6959790	opus	21	7602	13.5	8.0	10.8	1.8	7649	chr2R	6952141	intron,intron,exon	mim -,CheB42c -,ppk25 +	chr2R	6955966	intron,intron	mim -,CheB42c -	chr2R	6959790	intron,intron	mim -,CheB42c -	chr2R_21_6955001	chr2R_6955001	RAL-304_100b
1110	chr2R	7139946	7139951	chr2R	7141441	7141468	hopper2	10	1512	22.0	36.0	29.0	0.3	1522	chr2R	7139946	intergenic	not near genes	chr2R	7140707	intergenic	not near genes	chr2R	7141468	intergenic	not near genes	chr2R_10_7140001	chr2R_7140001	RAL-304_100b
1111	chr2R	7139952	7139953	chr2R	7141436	7141469	hopper2	5	1502	19.5	31.5	25.5	0.2	1517	chr2R	7139952	intergenic	not near genes	chr2R	7140710	intergenic	not near genes	chr2R	7141469	intergenic	not near genes	chr2R_5_7140001	chr2R_7140001	RAL-304_100b
1115	chr2R	7196552	7196594	chr2R	7201346	7201380	F-element	17	4797	11.0	7.5	9.2	1.7	4828	chr2R	7196552	intron	pk +	chr2R	7198966	intron	pk +	chr2R	7201380	intron	pk +	chr2R_17_7195001	chr2R_7195001	RAL-304_100b
1116	chr2R	7209851	7209871	chr2R	7217604	7217618	roo	12	7768	13.0	21.0	17.0	0.7	7767	chr2R	7209851	intron	pk +	chr2R	7213734	intron	pk +	chr2R	7217618	intron	pk +	chr2R_12_7210001	chr2R_7210001	RAL-304_100b
1117	chr2R	7235796	7235851	chr2R	7240913	7240953	jockey	54	5114	13.0	15.5	14.2	3.6	5157	chr2R	7235796	intergenic	not near genes	chr2R	7238374	intergenic	not near genes	chr2R	7240953	intergenic	not near genes	chr2R_54_7235001	chr2R_7235001	RAL-304_100b
1126	chr2R	7434869	7434892	chr2R	7439195	7439218	Juan	14	4325	20.5	20.5	20.5	0.7	4349	chr2R	7434869	3` UTR	so +	chr2R	7437044	intergenic	not near genes	chr2R	7439218	intergenic	not near genes	chr2R_14_7435001	chr2R_7435001	RAL-304_100b
1127	chr2R	7434895	7434911	chr2R	7439185	7439237	Juan	6	4320	18.0	12.0	15.0	0.4	4342	chr2R	7434895	intergenic	so +	chr2R	7437066	intergenic	not near genes	chr2R	7439237	intergenic	not near genes	chr2R_6_7435001	chr2R_7435001	RAL-304_100b
1134	chr2R	7608386	7608445	chr2R	7613614	7613673	I-element	10	5225	5.0	0.0	2.5	2.9	5287	chr2R	7608386	intron	CG1358 -	chr2R	7611030	intron	CG1358 -	chr2R	7613673	intron	CG1358 -	chr2R_10_7610001	chr2R_7610001	RAL-304_100b
1137	chr2R	7815654	7815703	chr2R	7822140	7822152	Burdock	41	6488	13.0	16.0	14.5	2.6	6498	chr2R	7815654	intergenic	CG1882 +	chr2R	7818903	intergenic	not near genes	chr2R	7822152	3` UTR	cathD -	chr2R_41_7815001	chr2R_7815001	RAL-304_100b
1138	chr2R	7862244	7862250	chr2R	7867355	7867361	flea	4	5111	34.0	10.5	22.2	0.2	5117	chr2R	7862244	intron	Dgk -	chr2R	7864802	intron	Dgk -	chr2R	7867361	intron	Dgk -	chr2R_4_7860001	chr2R_7860001	RAL-304_100b
1139	chr2R	7869167	7869216	chr2R	7873978	7874007	Doc	29	4806	19.5	20.5	20.0	1.4	4840	chr2R	7869167	intron	Dgk -	chr2R	7871587	intron	Dgk -	chr2R	7874007	intron	Dgk -	chr2R_29_7870001	chr2R_7870001	RAL-304_100b
1153	chr2R	8160909	8160945	chr2R	8161024	8161060	1360	32	113	26.0	32.0	29.0	1.1	151	chr2R	8160909	exon	CG8708 -	chr2R	8160984	intron	CG8708 -	chr2R	8161060	intron	CG8708 -	chr2R_32_8160001	chr2R_8160001	RAL-304_100b
1158	chr2R	8330837	8330854	chr2R	8331348	8331365	roo	12	507	34.5	12.0	23.2	0.5	528	chr2R	8330837	intron	pdm3 +	chr2R	8331101	intron	pdm3 +	chr2R	8331365	intron	pdm3 +	chr2R_12_8330001	chr2R_8330001	RAL-304_100b
1159	chr2R	8330856	8330888	chr2R	8331346	8331393	roo	20	504	18.0	11.5	14.8	1.3	537	chr2R	8330856	intron	pdm3 +	chr2R	8331124	intron	pdm3 +	chr2R	8331393	intron	pdm3 +	chr2R_20_8330001	chr2R_8330001	RAL-304_100b
1161	chr2R	8398188	8398199	chr2R	8402994	8403005	Doc	7	4806	49.0	19.0	34.0	0.2	4817	chr2R	8398188	intron	CG2121 -	chr2R	8400596	intron	CG2121 -	chr2R	8403005	intron	CG2121 -	chr2R_7_8400001	chr2R_8400001	RAL-304_100b
1162	chr2R	8398202	8398219	chr2R	8402992	8403024	Doc	25	4801	33.5	17.5	25.5	0.9	4822	chr2R	8398202	intron	CG2121 -	chr2R	8400613	intron	CG2121 -	chr2R	8403024	intron	CG2121 -	chr2R_25_8400001	chr2R_8400001	RAL-304_100b
1163	chr2R	8398220	8398240	chr2R	8402990	8403046	Doc	17	4799	19.5	16.5	18.0	0.9	4826	chr2R	8398220	intron	CG2121 -	chr2R	8400633	intron	CG2121 -	chr2R	8403046	intron	CG2121 -	chr2R_17_8400001	chr2R_8400001	RAL-304_100b
1172	chr2R	8722738	8722795	chr2R	8723004	8723056	pogo	64	261	11.0	14.5	12.8	4.6	318	chr2R	8722738	intron	CG14767 -	chr2R	8722897	intron	CG14767 -	chr2R	8723056	intron	CG14767 -	chr2R_64_8720001	chr2R_8720001	RAL-304_100b
1174	chr2R	8777901	8777945	chr2R	8784129	8784174	diver	16	6228	6.0	13.0	9.5	1.5	6273	chr2R	8777901	intergenic	not near genes	chr2R	8781038	intergenic	not near genes	chr2R	8784174	intergenic	not near genes	chr2R_16_8780001	chr2R_8780001	RAL-304_100b
1179	chr2R	9212671	9212684	chr2R	9213182	9213190	roo	8	510	39.5	21.0	30.2	0.3	519	chr2R	9212671	intergenic	CR45309 +	chr2R	9212930	intergenic	CR45309 +	chr2R	9213190	5` UTR	CR45309 +	chr2R_8_9210001	chr2R_9210001	RAL-304_100b
1180	chr2R	9212689	9212721	chr2R	9213177	9213207	roo	41	504	17.0	20.0	18.5	2.1	518	chr2R	9212689	intergenic	CR45309 +	chr2R	9212948	intergenic	CR45309 +	chr2R	9213207	5` UTR	CR45309 +	chr2R_41_9210001	chr2R_9210001	RAL-304_100b
1191	chr2R	9480054	9480103	chr2R	9490610	9490654	roo	19	10555	10.0	9.0	9.5	1.8	10600	chr2R	9480054	intergenic	not near genes	chr2R	9485354	intergenic	not near genes	chr2R	9490654	intergenic	not near genes	chr2R_19_9485001	chr2R_9485001	RAL-304_100b
1200	chr2R	9726595	9726643	chr2R	9734171	9734184	17.6	25	7573	13.0	5.0	9.0	2.5	7589	chr2R	9726595	intron	sqa -	chr2R	9730390	intron	sqa -	chr2R	9734184	intron	sqa -	chr2R_25_9730001	chr2R_9730001	RAL-304_100b
1203	chr2R	9871038	9871073	chr2R	9871549	9871584	roo	23	509	12.0	7.5	9.8	2.1	546	chr2R	9871038	intron	cbx -	chr2R	9871311	intron	cbx -	chr2R	9871584	intron,5` UTR	cbx -,CG18446 +	chr2R_23_9870001	chr2R_9870001	RAL-304_100b
1204	chr2R	9945419	9945425	chr2R	9945637	9945643	BS	6	219	26.0	12.0	19.0	0.3	224	chr2R	9945419	intron	Mef2 -	chr2R	9945531	intron	Mef2 -	chr2R	9945643	intron	Mef2 -	chr2R_6_9945001	chr2R_9945001	RAL-304_100b
1205	chr2R	9945426	9945465	chr2R	9945631	9945686	BS	39	216	12.5	10.5	11.5	3.1	260	chr2R	9945426	intron	Mef2 -	chr2R	9945556	intron	Mef2 -	chr2R	9945686	intron	Mef2 -	chr2R_39_9945001	chr2R_9945001	RAL-304_100b
1209	chr2R	10005834	10005838	chr2R	10007018	10007018	1360	7	1186	34.5	20.0	27.2	0.2	1184	chr2R	10005834	intron	Pka-R2 -	chr2R	10006426	intron	Pka-R2 -	chr2R	10007018	intron	Pka-R2 -	chr2R_7_10005001	chr2R_10005001	RAL-304_100b
1210	chr2R	10005841	10005880	chr2R	10007014	10007040	1360	46	1177	16.0	16.5	16.2	2.7	1199	chr2R	10005841	intron	Pka-R2 -	chr2R	10006440	intron	Pka-R2 -	chr2R	10007040	intron	Pka-R2 -	chr2R_46_10005001	chr2R_10005001	RAL-304_100b
1220	chr2R	10176861	10176912	chr2R	10186053	10186104	roo	22	9192	12.0	9.0	10.5	1.9	9243	chr2R	10176861	intron	KCNQ -	chr2R	10181482	intron	KCNQ -	chr2R	10186104	intron	KCNQ -	chr2R_22_10180001	chr2R_10180001	RAL-304_100b
1241	chr2R	10585573	10585591	chr2R	10594178	10594184	Tirant	11	8605	12.5	19.5	16.0	0.6	8611	chr2R	10585573	intron	psq +	chr2R	10589878	intron	psq +	chr2R	10594184	intron	psq +	chr2R_11_10585001	chr2R_10585001	RAL-304_100b
1253	chr2R	10948021	10948024	chr2R	10955582	10955600	17.6	6	7570	8.0	20.5	14.2	0.4	7579	chr2R	10948021	intergenic	not near genes	chr2R	10951810	intergenic	not near genes	chr2R	10955600	intergenic	not near genes	chr2R_6_10950001	chr2R_10950001	RAL-304_100b
1254	chr2R	10948026	10948032	chr2R	10955581	10955581	17.6	11	7567	9.0	20.0	14.5	0.7	7555	chr2R	10948026	intergenic	not near genes	chr2R	10951804	intergenic	not near genes	chr2R	10955581	intergenic	not near genes	chr2R_11_10950001	chr2R_10950001	RAL-304_100b
1255	chr2R	10948033	10948062	chr2R	10955576	10955626	17.6	31	7565	7.0	17.0	12.0	2.4	7593	chr2R	10948033	intergenic	not near genes	chr2R	10951830	intergenic	not near genes	chr2R	10955626	intergenic	not near genes	chr2R_31_10950001	chr2R_10950001	RAL-304_100b
1257	chr2R	10979636	10979687	chr2R	10980126	10980156	297	27	487	11.5	10.5	11.0	2.2	520	chr2R	10979636	intergenic	not near genes	chr2R	10979896	intergenic	not near genes	chr2R	10980156	intergenic	not near genes	chr2R_27_10975001	chr2R_10975001	RAL-304_100b
1259	chr2R	11009795	11009847	chr2R	11018994	11019026	roo	29	9192	14.0	21.0	17.5	1.6	9231	chr2R	11009795	intron	luna -	chr2R	11014410	intron	luna -	chr2R	11019026	intron	luna -	chr2R_29_11010001	chr2R_11010001	RAL-304_100b
1260	chr2R	11019858	11019860	chr2R	11024948	11024951	jockey	6	5090	44.0	24.0	34.0	0.2	5093	chr2R	11019858	intron	luna -	chr2R	11022404	intron	luna -	chr2R	11024951	intron	luna -	chr2R_6_11020001	chr2R_11020001	RAL-304_100b
1261	chr2R	11019868	11019910	chr2R	11024944	11024950	jockey	44	5078	14.0	23.0	18.5	2.3	5082	chr2R	11019868	intron	luna -	chr2R	11022409	intron	luna -	chr2R	11024950	intron	luna -	chr2R_44_11020001	chr2R_11020001	RAL-304_100b
1273	chr2R	11207790	11207847	chr2R	11208006	11208028	BS	44	212	20.0	11.5	15.8	2.6	238	chr2R	11207790	intron	shn +	chr2R	11207909	intron	shn +	chr2R	11208028	intron	shn +	chr2R_44_11205001	chr2R_11205001	RAL-304_100b
1278	chr2R	11297600	11297612	chr2R	11301944	11301958	flea	4	4346	42.5	17.5	30.0	0.1	4358	chr2R	11297600	intergenic	CG42336 -	chr2R	11299779	intergenic	not near genes	chr2R	11301958	5` UTR	CG7741 +	chr2R_4_11295001	chr2R_11295001	RAL-304_100b
1279	chr2R	11297615	11297616	chr2R	11301940	11301954	flea	6	4335	38.5	16.5	27.5	0.2	4339	chr2R	11297615	intergenic	CG42336 -	chr2R	11299784	intergenic	not near genes	chr2R	11301954	5` UTR	CG7741 +	chr2R_6_11295001	chr2R_11295001	RAL-304_100b
1280	chr2R	11297617	11297650	chr2R	11301938	11301967	flea	22	4338	17.5	15.5	16.5	1.3	4350	chr2R	11297617	intergenic	CG42336 -	chr2R	11299792	intergenic	not near genes	chr2R	11301967	5` UTR	CG7741 +	chr2R_22_11295001	chr2R_11295001	RAL-304_100b
1286	chr2R	11415513	11415526	chr2R	11418675	11418697	opus	9	3168	2.0	19.0	10.5	0.8	3184	chr2R	11415513	intron	Drip -	chr2R	11417105	intron	Drip -	chr2R	11418697	intron	Drip -	chr2R_9_11415001	chr2R_11415001	RAL-304_100b
1287	chr2R	11415527	11415550	chr2R	11418666	11418724	opus	31	3168	1.5	13.5	7.5	3.6	3197	chr2R	11415527	intron	Drip -	chr2R	11417126	intron	Drip -	chr2R	11418724	intron	Drip -	chr2R_31_11415001	chr2R_11415001	RAL-304_100b
1289	chr2R	1320201	1320201	chr2R	11463556	11463556	invader1	4	10143355	67.0	43.5	55.2	0.1	10143355	chr2R	1320201	intergenic	not near genes	chr2R	6391878	intergenic	not near genes	chr2R	11463556	3` UTR	E(Pc) +	chr2R_4_6390001	chr2R_6390001	RAL-304_100b
1290	chr2R	11472624	11472679	chr2R	11473846	11473901	pogo	26	1219	13.5	10.5	12.0	2.0	1277	chr2R	11472624	intergenic	not near genes	chr2R	11473262	intergenic	not near genes	chr2R	11473901	intergenic	not near genes	chr2R_26_11470001	chr2R_11470001	RAL-304_100b
1315	chr2R	12481140	12481145	chr2R	12482947	12482952	roo	10	1814	21.5	22.0	21.8	0.4	1812	chr2R	12481140	exon	Dh44-R2 +	chr2R	12482046	intron	Dh44-R2 +	chr2R	12482952	intron	Dh44-R2 +	chr2R_10_12480001	chr2R_12480001	RAL-304_100b
1316	chr2R	12481146	12481170	chr2R	12482946	12482968	roo	31	1817	11.0	21.5	16.2	1.8	1822	chr2R	12481146	exon	Dh44-R2 +	chr2R	12482057	intron	Dh44-R2 +	chr2R	12482968	intron	Dh44-R2 +	chr2R_31_12480001	chr2R_12480001	RAL-304_100b
1317	chr2R	12501683	12501686	chr2R	12503861	12503873	Rt1c	5	2185	50.0	21.5	35.8	0.1	2190	chr2R	12501683	intron	fdl -	chr2R	12502778	intron	fdl -	chr2R	12503873	intron	fdl -	chr2R_5_12500001	chr2R_12500001	RAL-304_100b
1318	chr2R	12501687	12501694	chr2R	12503859	12503876	Rt1c	6	2180	45.0	20.5	32.8	0.2	2189	chr2R	12501687	intron	fdl -	chr2R	12502782	intron	fdl -	chr2R	12503876	intron	fdl -	chr2R_6_12500001	chr2R_12500001	RAL-304_100b
1319	chr2R	12501696	12501721	chr2R	12503853	12503907	Rt1c	37	2178	27.5	18.5	23.0	1.5	2211	chr2R	12501696	intron	fdl -	chr2R	12502802	intron	fdl -	chr2R	12503907	intron	fdl -	chr2R_37_12500001	chr2R_12500001	RAL-304_100b
1320	chr2R	12501722	12501727	chr2R	12503848	12503870	Rt1c	6	2161	23.0	16.5	19.8	0.3	2148	chr2R	12501722	intron	fdl -	chr2R	12502796	intron	fdl -	chr2R	12503870	intron	fdl -	chr2R_6_12500001	chr2R_12500001	RAL-304_100b
1329	chr2R	12707492	12707546	chr2R	12715883	12715936	roo	22	8389	8.0	4.0	6.0	3.1	8444	chr2R	12707492	intron	CG42663 +	chr2R	12711714	intron	CG42663 +	chr2R	12715936	intron	CG42663 +	chr2R_22_12710001	chr2R_12710001	RAL-304_100b
1335	chr2R	12789276	12789319	chr2R	12797658	12797694	roo	38	8381	15.5	17.0	16.2	2.2	8418	chr2R	12789276	intron,3` UTR	sca +,CR45137 -	chr2R	12793485	intron,intron	sca +,CR45137 -	chr2R	12797694	intron,3` UTR	sca +,CR45137 -	chr2R_38_12790001	chr2R_12790001	RAL-304_100b
1336	chr2R	12789320	12789328	chr2R	12797656	12797700	roo	9	8375	12.0	15.5	13.8	0.6	8380	chr2R	12789320	intron,3` UTR	sca +,CR45137 -	chr2R	12793510	intron,intron	sca +,CR45137 -	chr2R	12797700	intron,3` UTR	sca +,CR45137 -	chr2R_9_12790001	chr2R_12790001	RAL-304_100b
1338	chr2R	12819427	12819479	chr2R	12824525	12824557	jockey	71	5093	22.0	35.5	28.8	2.4	5130	chr2R	12819427	intergenic	not near genes	chr2R	12821992	intergenic	not near genes	chr2R	12824557	intergenic	not near genes	chr2R_71_12820001	chr2R_12820001	RAL-304_100b
1345	chr2R	13136816	13136862	chr2R	13141639	13141685	Doc	50	4819	16.0	31.0	23.5	2.0	4869	chr2R	13136816	exon	Cap-G +	chr2R	13139250	intron	Cap-G +	chr2R	13141685	intron	Cap-G +	chr2R_50_13135001	chr2R_13135001	RAL-304_100b
1346	chr2R	13136863	13136865	chr2R	13141636	13141662	Doc	5	4799	14.0	29.0	21.5	0.2	4799	chr2R	13136863	intron	Cap-G +	chr2R	13139262	intron	Cap-G +	chr2R	13141662	intron	Cap-G +	chr2R_5_13135001	chr2R_13135001	RAL-304_100b
1363	chr2R	13580477	13580491	chr2R	13580852	13580855	jockey	12	373	31.0	15.0	23.0	0.5	378	chr2R	13580477	3` UTR	CG6191 -	chr2R	13580666	3` UTR,3` UTR	CG6191 -,CG45088 -	chr2R	13580855	3` UTR,3` UTR	CG6191 -,CG45088 -	chr2R_12_13580001	chr2R_13580001	RAL-304_100b
1364	chr2R	13580492	13580530	chr2R	13580846	13580870	jockey	44	368	17.0	13.0	15.0	2.8	378	chr2R	13580492	3` UTR	CG6191 -	chr2R	13580681	3` UTR,3` UTR	CG6191 -,CG45088 -	chr2R	13580870	3` UTR,3` UTR	CG6191 -,CG45088 -	chr2R_44_13580001	chr2R_13580001	RAL-304_100b
1372	chr2R	13728110	13728130	chr2R	13735792	13735812	opus	11	7682	20.0	7.0	13.5	0.8	7702	chr2R	13728110	intron	fas +	chr2R	13731961	intron	fas +	chr2R	13735812	intron	fas +	chr2R_11_13730001	chr2R_13730001	RAL-304_100b
1373	chr2R	13728132	13728162	chr2R	13735789	13735843	opus	14	7673	9.5	6.0	7.8	1.6	7711	chr2R	13728132	intron	fas +	chr2R	13731988	intron	fas +	chr2R	13735843	intron	fas +	chr2R_14_13730001	chr2R_13730001	RAL-304_100b
1377	chr2R	13905584	13905630	chr2R	13907591	13907631	Rt1a	42	1999	24.5	31.0	27.8	1.5	2047	chr2R	13905584	intron	shot -	chr2R	13906608	intron	shot -	chr2R	13907631	intron	shot -	chr2R_42_13905001	chr2R_13905001	RAL-304_100b
1393	chr2R	14394209	14394223	chr2R	14399023	14399037	Doc	7	4814	32.5	9.5	21.0	0.3	4828	chr2R	14394209	intergenic	not near genes	chr2R	14396623	intergenic	not near genes	chr2R	14399037	intergenic	not near genes	chr2R_7_14395001	chr2R_14395001	RAL-304_100b
1401	chr2R	14467280	14467327	chr2R	14476463	14476509	roo	59	9179	10.0	17.5	13.8	4.0	9229	chr2R	14467280	intergenic	not near genes	chr2R	14471894	intergenic	not near genes	chr2R	14476509	5` UTR	CR44462 +	chr2R_59_14470001	chr2R_14470001	RAL-304_100b
1402	chr2R	14497364	14497387	chr2R	14498555	14498578	1360	16	1191	17.5	13.0	15.2	1.0	1214	chr2R	14497364	3` UTR	Cpsf160 -	chr2R	14497971	intron	Cpsf160 -	chr2R	14498578	3` UTR	Cpsf160 -	chr2R_16_14495001	chr2R_14495001	RAL-304_100b
1403	chr2R	14497391	14497415	chr2R	14498554	14498606	1360	23	1187	10.0	12.5	11.2	1.9	1215	chr2R	14497391	3` UTR	Cpsf160 -	chr2R	14497998	intron	Cpsf160 -	chr2R	14498606	3` UTR	Cpsf160 -	chr2R_23_14495001	chr2R_14495001	RAL-304_100b
1420	chr2R	14889190	14889194	chr2R	14897823	14897827	Max-element	4	8633	32.5	0.0	16.2	0.2	8637	chr2R	14889190	intergenic	Cyp6a8 -	chr2R	14893508	intergenic	not near genes	chr2R	14897827	intergenic	not near genes	chr2R_4_14890001	chr2R_14890001	RAL-304_100b
1421	chr2R	14889199	14889216	chr2R	14897816	14897834	Max-element	14	8628	22.0	0.0	11.0	1.2	8635	chr2R	14889199	intergenic	Cyp6a8 -	chr2R	14893516	intergenic	not near genes	chr2R	14897834	intergenic	not near genes	chr2R_14_14890001	chr2R_14890001	RAL-304_100b
1431	chr2R	15004698	15004755	chr2R	15005053	15005108	jockey	29	352	16.0	12.5	14.2	1.9	410	chr2R	15004698	intergenic	not near genes	chr2R	15004903	intergenic	not near genes	chr2R	15005108	intergenic	not near genes	chr2R_29_15000001	chr2R_15000001	RAL-304_100b
1434	chr2R	15015431	15015487	chr2R	15022880	15022932	mdg1	25	7446	8.0	9.5	8.8	2.6	7501	chr2R	15015431	intron	hbs +	chr2R	15019182	intron	hbs +	chr2R	15022932	intron	hbs +	chr2R_25_15015001	chr2R_15015001	RAL-304_100b
1438	chr2R	15084956	15085005	chr2R	15092028	15092079	297	43	7070	13.5	20.5	17.0	2.4	7123	chr2R	15084956	intergenic	not near genes	chr2R	15088518	intergenic	not near genes	chr2R	15092079	5` UTR	CR44457 +	chr2R_43_15085001	chr2R_15085001	RAL-304_100b
1442	chr2R	15119300	15119350	chr2R	15127800	15127840	Tirant	35	8501	14.0	6.0	10.0	3.2	8540	chr2R	15119300	intron	chn +	chr2R	15123570	intron	chn +	chr2R	15127840	intron	chn +	chr2R_35_15120001	chr2R_15120001	RAL-304_100b
1481	chr2R	16539622	16539633	chr2R	16544853	16544864	copia	4	5231	7.5	0.5	4.0	0.8	5242	chr2R	16539622	intergenic	not near genes	chr2R	16542243	intergenic	not near genes	chr2R	16544864	intergenic	not near genes	chr2R_4_16540001	chr2R_16540001	RAL-304_100b
1508	chr2R	17147226	17147232	chr2R	17152276	17152288	jockey	5	5052	34.5	25.5	30.0	0.2	5062	chr2R	17147226	intergenic	not near genes	chr2R	17149757	intergenic	not near genes	chr2R	17152288	intergenic	not near genes	chr2R_5_17145001	chr2R_17145001	RAL-304_100b
1509	chr2R	17147235	17147277	chr2R	17152275	17152277	jockey	24	5050	15.0	25.5	20.2	1.1	5042	chr2R	17147235	intergenic	not near genes	chr2R	17149756	intergenic	not near genes	chr2R	17152277	intergenic	not near genes	chr2R_24_17145001	chr2R_17145001	RAL-304_100b
1519	chr2R	17236483	17236509	chr2R	17241712	17241737	copia	20	5228	28.0	21.5	24.8	0.8	5254	chr2R	17236483	intron	mbl +	chr2R	17239110	intron	mbl +	chr2R	17241737	intron	mbl +	chr2R_20_17235001	chr2R_17235001	RAL-304_100b
1520	chr2R	17236511	17236536	chr2R	17241710	17241757	copia	29	5225	17.0	18.0	17.5	1.6	5246	chr2R	17236511	intron	mbl +	chr2R	17239134	intron	mbl +	chr2R	17241757	intron	mbl +	chr2R_29_17235001	chr2R_17235001	RAL-304_100b
1521	chr2R	17277237	17277241	chr2R	17277620	17277668	jockey	5	414	22.0	16.5	19.2	0.2	431	chr2R	17277237	intron	mbl +	chr2R	17277452	intron	mbl +	chr2R	17277668	intron	mbl +	chr2R_5_17275001	chr2R_17275001	RAL-304_100b
1527	chr2R	17485896	17485905	chr2R	17490683	17490692	F-element	11	4787	24.0	0.0	12.0	0.8	4796	chr2R	17485896	5` UTR,intron	CG43110 -,NT5E-2 +	chr2R	17488294	intron	NT5E-2 +	chr2R	17490692	intron	NT5E-2 +	chr2R_11_17485001	chr2R_17485001	RAL-304_100b
1528	chr2R	17485906	17485916	chr2R	17490678	17490698	F-element	9	4784	21.5	0.0	10.8	0.8	4792	chr2R	17485906	5` UTR,intron	CG43110 -,NT5E-2 +	chr2R	17488302	intron	NT5E-2 +	chr2R	17490698	intron	NT5E-2 +	chr2R_9_17485001	chr2R_17485001	RAL-304_100b
1539	chr2R	17782338	17782394	chr2R	17783566	17783622	pogo	22	1227	6.0	7.0	6.5	2.9	1284	chr2R	17782338	intergenic	CG33981 -,fab1 -	chr2R	17782980	intergenic	not near genes	chr2R	17783622	intergenic	mir-31a -	chr2R_22_17780001	chr2R_17780001	RAL-304_100b
1540	chr2R	17784018	17784057	chr2R	17784268	17784323	pogo	24	258	9.0	21.5	15.2	1.5	305	chr2R	17784018	intergenic	mir-31a -	chr2R	17784170	intergenic	mir-31a -	chr2R	17784323	intergenic	mir-31a -	chr2R_24_17780001	chr2R_17780001	RAL-304_100b
1553	chr2R	18111653	18111716	chr2R	18115546	18115601	F-element	13	3887	3.0	1.5	2.2	4.1	3948	chr2R	18111653	intergenic	not near genes	chr2R	18113627	intergenic	not near genes	chr2R	18115601	intergenic	not near genes	chr2R_13_18110001	chr2R_18110001	RAL-304_100b
1565	chr2R	18358368	18358392	chr2R	18372605	18372629	roo	20	14236	32.5	16.5	24.5	0.8	14261	chr2R	18358368	intergenic	not near genes	chr2R	18365498	intergenic	not near genes	chr2R	18372629	intergenic	not near genes	chr2R_20_18365001	chr2R_18365001	RAL-304_100b
1566	chr2R	18358393	18358421	chr2R	18372599	18372648	roo	21	14230	18.5	15.5	17.0	1.2	14255	chr2R	18358393	intergenic	not near genes	chr2R	18365520	intergenic	not near genes	chr2R	18372648	intergenic	not near genes	chr2R_21_18365001	chr2R_18365001	RAL-304_100b
1577	chr2R	18487813	18487854	chr2R	18495289	18495349	blood	25	7478	2.0	13.5	7.8	2.8	7536	chr2R	18487813	intron	CG30116 -	chr2R	18491581	intron	CG30116 -	chr2R	18495349	intron	CG30116 -	chr2R_25_18490001	chr2R_18490001	RAL-304_100b
1582	chr2R	18575772	18575810	chr2R	18581985	18582005	3S18	26	6203	19.5	9.0	14.2	1.7	6233	chr2R	18575772	intron	GEFmeso -	chr2R	18578888	intron	GEFmeso -	chr2R	18582005	intron	GEFmeso -	chr2R_26_18575001	chr2R_18575001	RAL-304_100b
1583	chr2R	18575811	18575829	chr2R	18581984	18582041	3S18	40	6200	10.5	9.0	9.8	3.7	6230	chr2R	18575811	intron	GEFmeso -	chr2R	18578926	intron	GEFmeso -	chr2R	18582041	intron	GEFmeso -	chr2R_40_18575001	chr2R_18575001	RAL-304_100b
1584	chr2R	18590840	18590901	chr2R	18600017	18600077	roo	74	9174	16.5	15.0	15.8	4.4	9237	chr2R	18590840	intron	GEFmeso -	chr2R	18595458	intron	GEFmeso -	chr2R	18600077	intron	GEFmeso -	chr2R_74_18595001	chr2R_18595001	RAL-304_100b
1626	chr2R	13468972	13469009	chr2R	19617238	19617239	copia	4	6148251	0.5	72.0	36.2	0.1	6148267	chr2R	13468972	intron	arr -	chr2R	16543106	intergenic	not near genes	chr2R	19617239	intron	sm -	chr2R_4_16540001	chr2R_16540001	RAL-304_100b
1631	chr2R	19715831	19715841	chr2R	19723325	19723335	blood	6	7494	43.0	19.5	31.2	0.2	7504	chr2R	19715831	intergenic	not near genes	chr2R	19719583	intergenic	not near genes	chr2R	19723335	intergenic	not near genes	chr2R_6_19715001	chr2R_19715001	RAL-304_100b
1632	chr2R	19715842	19715857	chr2R	19723324	19723351	blood	21	7491	31.5	19.0	25.2	0.8	7509	chr2R	19715842	intergenic	not near genes	chr2R	19719596	intergenic	not near genes	chr2R	19723351	intergenic	not near genes	chr2R_21_19715001	chr2R_19715001	RAL-304_100b
1633	chr2R	19776567	19776630	chr2R	19779915	19779940	jockey	36	3342	7.0	9.5	8.2	3.9	3373	chr2R	19776567	intergenic	not near genes	chr2R	19778254	intergenic	not near genes	chr2R	19779940	intergenic	not near genes	chr2R_36_19775001	chr2R_19775001	RAL-304_100b
1639	chr2R	19914824	19914849	chr2R	19922261	19922271	mdg1	28	7435	22.5	15.5	19.0	1.4	7447	chr2R	19914824	intergenic	not near genes	chr2R	19918548	intergenic	not near genes	chr2R	19922271	intergenic	not near genes	chr2R_28_19915001	chr2R_19915001	RAL-304_100b
1640	chr2R	19914850	19914852	chr2R	19922260	19922286	mdg1	4	7426	21.0	15.0	18.0	0.2	7436	chr2R	19914850	intergenic	not near genes	chr2R	19918568	intergenic	not near genes	chr2R	19922286	intergenic	not near genes	chr2R_4_19915001	chr2R_19915001	RAL-304_100b
1641	chr2R	19914855	19914876	chr2R	19922256	19922313	mdg1	18	7434	12.5	11.5	12.0	1.4	7458	chr2R	19914855	intergenic	not near genes	chr2R	19918584	intergenic	not near genes	chr2R	19922313	intergenic	not near genes	chr2R_18_19915001	chr2R_19915001	RAL-304_100b
1642	chr2R	19957410	19957418	chr2R	19962637	19962645	copia	4	5226	39.0	14.5	26.8	0.1	5235	chr2R	19957410	intergenic	CG44623 +	chr2R	19960028	intergenic	not near genes	chr2R	19962645	intergenic	not near genes	chr2R_4_19960001	chr2R_19960001	RAL-304_100b
1643	chr2R	19957420	19957463	chr2R	19962631	19962678	copia	50	5218	13.0	12.0	12.5	3.7	5258	chr2R	19957420	intergenic	CG44623 +	chr2R	19960049	intergenic	not near genes	chr2R	19962678	intergenic	not near genes	chr2R_50_19960001	chr2R_19960001	RAL-304_100b
1646	chr2R	20069217	20069277	chr2R	20071872	20071916	opus	17	2652	0.0	17.5	8.8	1.7	2699	chr2R	20069217	intergenic	not near genes	chr2R	20070566	intergenic	not near genes	chr2R	20071916	intergenic	not near genes	chr2R_17_20070001	chr2R_20070001	RAL-304_100b
1647	chr2R	20087976	20088027	chr2R	20088102	20088160	1360	10	129	10.0	1.0	5.5	1.5	184	chr2R	20087976	intergenic	not near genes	chr2R	20088068	intergenic	not near genes	chr2R	20088160	intergenic	not near genes	chr2R_10_20085001	chr2R_20085001	RAL-304_100b
1657	chr2R	20368490	20368496	chr2R	20377678	20377684	roo	4	9188	26.0	18.5	22.2	0.2	9194	chr2R	20368490	intergenic	not near genes	chr2R	20373087	intergenic	not near genes	chr2R	20377684	intergenic	not near genes	chr2R_4_20370001	chr2R_20370001	RAL-304_100b
1677	chr2R	20739418	20739435	chr2R	20744211	20744223	F-element	21	4791	55.0	22.5	38.8	0.5	4805	chr2R	20739418	intron	dpr +	chr2R	20741820	intron	dpr +	chr2R	20744223	intron	dpr +	chr2R_21_20740001	chr2R_20740001	RAL-304_100b
1678	chr2R	20739436	20739477	chr2R	20744209	20744240	F-element	47	4788	23.5	21.5	22.5	2.0	4804	chr2R	20739436	intron	dpr +	chr2R	20741838	intron	dpr +	chr2R	20744240	intron	dpr +	chr2R_47_20740001	chr2R_20740001	RAL-304_100b
1682	chr2R	20783287	20783294	chr2R	20788084	20788091	F-element	5	4797	28.5	19.0	23.8	0.2	4804	chr2R	20783287	intergenic	not near genes	chr2R	20785689	intergenic	not near genes	chr2R	20788091	intergenic	CG43666 -	chr2R_5_20785001	chr2R_20785001	RAL-304_100b
1683	chr2R	20783296	20783330	chr2R	20788083	20788121	F-element	17	4792	12.5	19.0	15.8	1.0	4825	chr2R	20783296	intergenic	not near genes	chr2R	20785708	intergenic	not near genes	chr2R	20788121	intergenic	CG43666 -	chr2R_17_20785001	chr2R_20785001	RAL-304_100b
1697	chr2R	21151127	21151132	chr2R	21153812	21153817	opus	7	2685	0.0	24.0	12.0	0.5	2690	chr2R	21151127	intron	CG30389 -	chr2R	21152472	intron	CG30389 -	chr2R	21153817	intron	CG30389 -	chr2R_7_21150001	chr2R_21150001	RAL-304_100b
1698	chr2R	21151134	21151146	chr2R	21153799	21153815	opus	6	2679	0.0	15.5	7.8	0.7	2681	chr2R	21151134	intron	CG30389 -	chr2R	21152474	intron	CG30389 -	chr2R	21153815	intron	CG30389 -	chr2R_6_21150001	chr2R_21150001	RAL-304_100b
1721	chr2R	21738253	21738265	chr2R	21747438	21747450	roo	12	9184	32.5	14.0	23.2	0.5	9197	chr2R	21738253	intergenic	not near genes	chr2R	21742852	intergenic	not near genes	chr2R	21747450	intergenic	not near genes	chr2R_12_21740001	chr2R_21740001	RAL-304_100b
1722	chr2R	21738266	21738311	chr2R	21747436	21747458	roo	20	9172	12.5	12.5	12.5	1.5	9192	chr2R	21738266	intergenic	not near genes	chr2R	21742862	intergenic	not near genes	chr2R	21747458	intergenic	not near genes	chr2R_20_21740001	chr2R_21740001	RAL-304_100b
1723	chr2R	21753059	21753071	chr2R	21753569	21753581	roo	14	510	45.5	16.5	31.0	0.4	522	chr2R	21753059	intergenic	not near genes	chr2R	21753320	intergenic	not near genes	chr2R	21753581	intergenic	not near genes	chr2R_14_21750001	chr2R_21750001	RAL-304_100b
1724	chr2R	21753072	21753112	chr2R	21753567	21753622	roo	33	507	19.5	15.5	17.5	1.8	550	chr2R	21753072	intergenic	not near genes	chr2R	21753347	intergenic	not near genes	chr2R	21753622	intergenic	not near genes	chr2R_33_21750001	chr2R_21750001	RAL-304_100b
1725	chr2R	21809501	21809554	chr2R	21817766	21817819	roo	37	8264	11.5	17.0	14.2	2.4	8318	chr2R	21809501	intergenic	not near genes	chr2R	21813660	intergenic	not near genes	chr2R	21817819	intergenic	not near genes	chr2R_37_21810001	chr2R_21810001	RAL-304_100b
1762	chr2R	22349670	22349712	chr2R	22351479	22351521	jockey	43	1803	22.5	21.5	22.0	1.9	1851	chr2R	22349670	intron	Liprin-gamma -	chr2R	22350596	intron	Liprin-gamma -	chr2R	22351521	intron	Liprin-gamma -	chr2R_43_22350001	chr2R_22350001	RAL-304_100b
1763	chr2R	22349713	22349721	chr2R	22351477	22351510	jockey	8	1800	15.5	21.0	18.2	0.4	1797	chr2R	22349713	intron	Liprin-gamma -	chr2R	22350612	intron	Liprin-gamma -	chr2R	22351510	intron	Liprin-gamma -	chr2R_8_22350001	chr2R_22350001	RAL-304_100b
1764	chr2R	22360362	22360403	chr2R	22360820	22360820	jockey	9	453	28.0	18.0	23.0	0.4	458	chr2R	22360362	intron	Liprin-gamma -	chr2R	22360591	intron	Liprin-gamma -	chr2R	22360820	intron	Liprin-gamma -	chr2R_9_22360001	chr2R_22360001	RAL-304_100b
1767	chr2R	22525732	22525785	chr2R	22529316	22529356	jockey	41	3580	15.0	16.0	15.5	2.5	3624	chr2R	22525732	intron	px -	chr2R	22527544	intron	px -	chr2R	22529356	intron	px -	chr2R_41_22525001	chr2R_22525001	RAL-304_100b
1773	chr2R	22580412	22580440	chr2R	22586581	22586609	diver	5	6169	8.0	6.5	7.2	0.6	6197	chr2R	22580412	intron	dnr1 -	chr2R	22583510	intron	dnr1 -	chr2R	22586609	intron	dnr1 -	chr2R_5_22580001	chr2R_22580001	RAL-304_100b
1781	chr2R	22774942	22774960	chr2R	22775386	22775388	jockey	13	441	32.5	13.0	22.8	0.5	446	chr2R	22774942	intron	CG42260 -	chr2R	22775165	intron	CG42260 -	chr2R	22775388	intron	CG42260 -	chr2R_13_22775001	chr2R_22775001	RAL-304_100b
1782	chr2R	22774961	22774995	chr2R	22775384	22775424	jockey	33	440	14.0	12.5	13.2	2.3	463	chr2R	22774961	intron	CG42260 -	chr2R	22775192	intron	CG42260 -	chr2R	22775424	intron	CG42260 -	chr2R_33_22775001	chr2R_22775001	RAL-304_100b
1785	chr2R	22843037	22843046	chr2R	22845028	22845037	flea	7	1991	17.0	12.0	14.5	0.5	2000	chr2R	22843037	intergenic	CG9826 +	chr2R	22844037	intergenic	not near genes	chr2R	22845037	intergenic	not near genes	chr2R_7_22840001	chr2R_22840001	RAL-304_100b
1810	chr2R	23402586	23402596	chr2R	23407687	23407697	flea	7	5101	19.5	17.0	18.2	0.4	5111	chr2R	23402586	intergenic	CG3520 -	chr2R	23405142	intergenic	not near genes	chr2R	23407697	intergenic	not near genes	chr2R_7_23405001	chr2R_23405001	RAL-304_100b
1811	chr2R	23402598	23402642	chr2R	23407684	23407741	flea	28	5099	9.5	16.0	12.8	2.0	5143	chr2R	23402598	intergenic	CG3520 -	chr2R	23405170	intergenic	not near genes	chr2R	23407741	intergenic	not near genes	chr2R_28_23405001	chr2R_23405001	RAL-304_100b
1824	chr2R	23529553	23529607	chr2R	23537149	23537188	412	52	7586	16.0	25.5	20.8	2.4	7635	chr2R	23529553	intron	bw -	chr2R	23533370	intron	bw -	chr2R	23537188	exon	bw -	chr2R_52_23530001	chr2R_23530001	RAL-304_100b
1832	chr2R	23914284	23914332	chr2R	23921933	23921975	412	49	7646	23.5	28.5	26.0	1.8	7691	chr2R	23914284	exon	kcc +	chr2R	23918130	intron	kcc +	chr2R	23921975	exon	kcc +	chr2R_49_23915001	chr2R_23915001	RAL-304_100b
1839	chr2R	24147043	24147050	chr2R	24154645	24154652	412	4	7602	48.0	26.5	37.2	0.1	7609	chr2R	24147043	intron	Dat +	chr2R	24150848	intron	Dat +	chr2R	24154652	intron	Dat +	chr2R_4_24150001	chr2R_24150001	RAL-304_100b
1840	chr2R	24147051	24147088	chr2R	24154644	24154671	412	26	7597	20.0	25.5	22.8	1.1	7620	chr2R	24147051	intron	Dat +	chr2R	24150861	intron	Dat +	chr2R	24154671	intron	Dat +	chr2R_26_24150001	chr2R_24150001	RAL-304_100b
1841	chr2R	24177210	24177268	chr2R	24184720	24184778	412	27	7509	14.5	1.0	7.8	3.1	7568	chr2R	24177210	3` UTR	Nop60B +	chr2R	24180994	intron	Nop60B +	chr2R	24184778	3` UTR	Nop60B +	chr2R_27_24180001	chr2R_24180001	RAL-304_100b
1848	chr2R	24353407	24353420	chr2R	24361791	24361807	roo	11	8384	25.5	5.0	15.2	0.7	8400	chr2R	24353407	intron,intron	bs +,CR44811 -	chr2R	24357607	intron,intron	bs +,CR44811 -	chr2R	24361807	intron,intron	bs +,CR44811 -	chr2R_11_24355001	chr2R_24355001	RAL-304_100b
1849	chr2R	24353424	24353455	chr2R	24361788	24361819	roo	18	8382	13.0	5.0	9.0	1.8	8395	chr2R	24353424	intron,intron	bs +,CR44811 -	chr2R	24357622	intron,intron	bs +,CR44811 -	chr2R	24361819	intron,intron	bs +,CR44811 -	chr2R_18_24355001	chr2R_24355001	RAL-304_100b
1855	chr2R	24647554	24647618	chr2R	24655148	24655200	412	34	7588	0.0	15.0	7.5	4.0	7646	chr2R	24647554	intergenic	not near genes	chr2R	24651377	intergenic	not near genes	chr2R	24655200	intergenic	not near genes	chr2R_34_24650001	chr2R_24650001	RAL-304_100b
1863	chr2R	24727857	24727918	chr2R	24735390	24735421	mdg1	54	7526	11.5	12.0	11.8	4.2	7564	chr2R	24727857	intron	Mid1 -	chr2R	24731639	intron	Mid1 -	chr2R	24735421	intron	Mid1 -	chr2R_54_24730001	chr2R_24730001	RAL-304_100b
1864	chr2R	24763586	24763594	chr2R	24765587	24765595	G2	5	2001	57.5	26.5	42.0	0.1	2009	chr2R	24763586	exon	CG3894 +	chr2R	24764590	intron	CG3894 +	chr2R	24765595	exon	CG3894 +	chr2R_5_24760001	chr2R_24760001	RAL-304_100b
1865	chr2R	24763595	24763603	chr2R	24765586	24765599	G2	16	1997	47.5	26.5	37.0	0.4	2004	chr2R	24763595	exon	CG3894 +	chr2R	24764597	intron	CG3894 +	chr2R	24765599	exon	CG3894 +	chr2R_16_24760001	chr2R_24760001	RAL-304_100b
1866	chr2R	24763604	24763644	chr2R	24765584	24765645	G2	45	1995	24.0	24.5	24.2	1.8	2041	chr2R	24763604	exon	CG3894 +	chr2R	24764624	intron	CG3894 +	chr2R	24765645	exon	CG3894 +	chr2R_45_24760001	chr2R_24760001	RAL-304_100b
1880	chr2R	25141633	25141681	chr2R	25159348	25159395	roo	30	17714	11.0	12.0	11.5	2.4	17762	chr2R	25141633	intergenic	not near genes	chr2R	25150514	intergenic	not near genes	chr2R	25159395	intergenic	not near genes	chr2R_30_25150001	chr2R_25150001	RAL-304_100b
1897	chr3L	110187	110242	chr3L	119379	119434	roo	22	9188	11.5	14.5	13.0	1.6	9247	chr3L	110187	intergenic	not near genes	chr3L	114810	intergenic	not near genes	chr3L	119434	intergenic	not near genes	chr3L_22_110001	chr3L_110001	RAL-304_100b
1903	chr3L	402666	402673	chr3L	409744	409751	297	8	7078	46.5	21.0	33.8	0.2	7085	chr3L	402666	intergenic	not near genes	chr3L	406208	intergenic	not near genes	chr3L	409751	intergenic	not near genes	chr3L_8_405001	chr3L_405001	RAL-304_100b
1904	chr3L	402674	402718	chr3L	409740	409766	297	51	7073	17.0	19.0	18.0	2.7	7092	chr3L	402674	intergenic	not near genes	chr3L	406220	intergenic	not near genes	chr3L	409766	intergenic	not near genes	chr3L_51_405001	chr3L_405001	RAL-304_100b
1917	chr3L	789892	789941	chr3L	790402	790438	roo	31	509	9.0	15.0	12.0	2.4	546	chr3L	789892	intergenic	not near genes	chr3L	790165	intergenic	not near genes	chr3L	790438	intergenic	not near genes	chr3L_31_790001	chr3L_790001	RAL-304_100b
1920	chr3L	857973	858016	chr3L	866479	866522	Tirant	28	8501	24.5	20.5	22.5	1.2	8549	chr3L	857973	intergenic	not near genes	chr3L	862248	intergenic	not near genes	chr3L	866522	5` UTR	CG12502 +	chr3L_28_860001	chr3L_860001	RAL-304_100b
1921	chr3L	858017	858029	chr3L	866478	866519	Tirant	10	8488	18.0	20.5	19.2	0.5	8502	chr3L	858017	intergenic	not near genes	chr3L	862268	intergenic	not near genes	chr3L	866519	5` UTR	CG12502 +	chr3L_10_860001	chr3L_860001	RAL-304_100b
1925	chr3L	925151	925205	chr3L	932602	932656	mdg1	41	7448	12.5	12.0	12.2	3.1	7505	chr3L	925151	intron	Glut1 +	chr3L	928904	intron	Glut1 +	chr3L	932656	intron	Glut1 +	chr3L_41_925001	chr3L_925001	RAL-304_100b
1927	chr3L	939751	939784	chr3L	940897	940930	jockey	31	1145	24.5	16.5	20.5	1.4	1179	chr3L	939751	intron	Glut1 +	chr3L	940340	intron	Glut1 +	chr3L	940930	intron	Glut1 +	chr3L_31_940001	chr3L_940001	RAL-304_100b
1928	chr3L	939785	939800	chr3L	940891	940924	jockey	19	1136	19.0	14.0	16.5	1.1	1139	chr3L	939785	intron	Glut1 +	chr3L	940354	intron	Glut1 +	chr3L	940924	intron	Glut1 +	chr3L_19_940001	chr3L_940001	RAL-304_100b
1938	chr3L	1047334	1047347	chr3L	1055171	1055184	412	5	7835	22.5	12.0	17.2	0.3	7850	chr3L	1047334	intron	bab1 -	chr3L	1051259	intron	bab1 -	chr3L	1055184	intron	bab1 -	chr3L_5_1050001	chr3L_1050001	RAL-304_100b
1939	chr3L	1047350	1047366	chr3L	1055167	1055182	412	10	7829	17.0	11.5	14.2	0.7	7832	chr3L	1047350	intron	bab1 -	chr3L	1051266	intron	bab1 -	chr3L	1055182	intron	bab1 -	chr3L_10_1050001	chr3L_1050001	RAL-304_100b
1940	chr3L	1047367	1047385	chr3L	1055162	1055214	412	20	7815	9.5	10.0	9.8	1.9	7847	chr3L	1047367	intron	bab1 -	chr3L	1051290	intron	bab1 -	chr3L	1055214	intron	bab1 -	chr3L_20_1050001	chr3L_1050001	RAL-304_100b
1944	chr3L	1154106	1154161	chr3L	1163281	1163330	roo	33	9174	16.5	15.5	16.0	1.9	9224	chr3L	1154106	intron	bab2 -	chr3L	1158718	intron	bab2 -	chr3L	1163330	intron	bab2 -	chr3L_33_1155001	chr3L_1155001	RAL-304_100b
1946	chr3L	1219570	1219572	chr3L	1227328	1227330	412	4	7758	34.5	16.5	25.5	0.2	7760	chr3L	1219570	intron	mwh +	chr3L	1223450	intron	mwh +	chr3L	1227330	intron	mwh +	chr3L_4_1220001	chr3L_1220001	RAL-304_100b
1947	chr3L	1219573	1219623	chr3L	1227327	1227356	412	59	7750	11.0	16.5	13.8	4.0	7783	chr3L	1219573	intron	mwh +	chr3L	1223464	intron	mwh +	chr3L	1227356	intron	mwh +	chr3L_59_1220001	chr3L_1220001	RAL-304_100b
1955	chr3L	1424761	1424772	chr3L	1430022	1430039	Rt1a	10	5262	13.0	27.0	20.0	0.5	5278	chr3L	1424761	intron	Ptp61F -	chr3L	1427400	intron	Ptp61F -	chr3L	1430039	intron	Ptp61F -	chr3L_10_1425001	chr3L_1425001	RAL-304_100b
1956	chr3L	1485712	1485743	chr3L	1486908	1486934	1360	30	1192	21.0	37.0	29.0	1.0	1222	chr3L	1485712	intron	stet -	chr3L	1486323	intron	stet -	chr3L	1486934	intron	stet -	chr3L_30_1485001	chr3L_1485001	RAL-304_100b
1957	chr3L	1505985	1506032	chr3L	1513592	1513644	17.6	47	7618	17.0	20.5	18.8	2.4	7659	chr3L	1505985	intron,intron	Psa +,cue -	chr3L	1509814	intron,intron	Psa +,cue -	chr3L	1513644	intron,intron	Psa +,cue -	chr3L_47_1505001	chr3L_1505001	RAL-304_100b
1966	chr3L	1740835	1740842	chr3L	1741103	1741110	pogo	7	268	34.0	14.5	24.2	0.3	275	chr3L	1740835	intron	Gk +	chr3L	1740972	intron	Gk +	chr3L	1741110	intron	Gk +	chr3L_7_1740001	chr3L_1740001	RAL-304_100b
1967	chr3L	1740846	1740884	chr3L	1741099	1741132	pogo	17	259	15.0	12.5	13.8	1.1	286	chr3L	1740846	intron	Gk +	chr3L	1740989	intron	Gk +	chr3L	1741132	intron	Gk +	chr3L_17_1740001	chr3L_1740001	RAL-304_100b
1977	chr3L	2108243	2108249	chr3L	2113452	2113478	copia	4	5224	0.0	4.5	2.2	1.2	5235	chr3L	2108243	intron	sls -	chr3L	2110860	intron	sls -	chr3L	2113478	intron	sls -	chr3L_4_2110001	chr3L_2110001	RAL-304_100b
1984	chr3L	2447481	2447489	chr3L	2456662	2456670	roo	11	9180	49.0	17.5	33.2	0.3	9189	chr3L	2447481	intron	CG45186 +	chr3L	2452076	intron	CG45186 +	chr3L	2456670	intron	CG45186 +	chr3L_11_2450001	chr3L_2450001	RAL-304_100b
1985	chr3L	2447490	2447506	chr3L	2456661	2456687	roo	15	9173	40.0	17.5	28.8	0.5	9197	chr3L	2447490	intron	CG45186 +	chr3L	2452088	intron	CG45186 +	chr3L	2456687	intron	CG45186 +	chr3L_15_2450001	chr3L_2450001	RAL-304_100b
1986	chr3L	2447507	2447537	chr3L	2456658	2456665	roo	34	9168	21.0	14.5	17.8	1.8	9158	chr3L	2447507	intron	CG45186 +	chr3L	2452086	intron	CG45186 +	chr3L	2456665	intron	CG45186 +	chr3L_34_2450001	chr3L_2450001	RAL-304_100b
1999	chr3L	2751431	2751461	chr3L	2755751	2755781	F-element	5	4320	16.0	17.0	16.5	0.3	4350	chr3L	2751431	intron	Mrtf -	chr3L	2753606	intron	Mrtf -	chr3L	2755781	intron	Mrtf -	chr3L_5_2750001	chr3L_2750001	RAL-304_100b
2004	chr3L	2927813	2927871	chr3L	2936115	2936173	Tirant	41	8299	8.5	8.0	8.2	4.5	8360	chr3L	2927813	intron	Shab +	chr3L	2931993	intron	Shab +	chr3L	2936173	intron	Shab +	chr3L_41_2930001	chr3L_2930001	RAL-304_100b
2006	chr3L	2966704	2966722	chr3L	2974153	2974171	mdg1	11	7449	27.5	5.5	16.5	0.6	7467	chr3L	2966704	intergenic	not near genes	chr3L	2970438	intergenic	not near genes	chr3L	2974171	intergenic	not near genes	chr3L_11_2970001	chr3L_2970001	RAL-304_100b
2011	chr3L	3040299	3040329	chr3L	3042113	3042138	S-element	6	1808	15.5	0.5	8.0	0.7	1839	chr3L	3040299	3` UTR	CG2162 +	chr3L	3041218	intergenic	not near genes	chr3L	3042138	intergenic	Jafrac2 +	chr3L_6_3040001	chr3L_3040001	RAL-304_100b
2012	chr3L	3040330	3040356	chr3L	3042112	3042174	S-element	4	1794	11.0	0.5	5.8	0.6	1844	chr3L	3040330	3` UTR	CG2162 +	chr3L	3041252	intergenic	not near genes	chr3L	3042174	intergenic	Jafrac2 +	chr3L_4_3040001	chr3L_3040001	RAL-304_100b
2014	chr3L	3051722	3051757	chr3L	3051989	3052010	pogo	17	263	23.5	17.0	20.2	0.8	288	chr3L	3051722	3` UTR	CG32485 +	chr3L	3051866	intergenic	CG32485 +	chr3L	3052010	intergenic	CG32485 +	chr3L_17_3050001	chr3L_3050001	RAL-304_100b
2015	chr3L	3061259	3061282	chr3L	3069867	3069890	Tirant	20	8605	41.0	20.5	30.8	0.6	8631	chr3L	3061259	intron	CG32486 -	chr3L	3065574	intron	CG32486 -	chr3L	3069890	intron	CG32486 -	chr3L_20_3065001	chr3L_3065001	RAL-304_100b
2016	chr3L	3061283	3061315	chr3L	3069865	3069923	Tirant	37	8598	18.5	19.0	18.8	1.9	8640	chr3L	3061283	intron	CG32486 -	chr3L	3065603	intron	CG32486 -	chr3L	3069923	intron	CG32486 -	chr3L_37_3065001	chr3L_3065001	RAL-304_100b
2023	chr3L	3281412	3281477	chr3L	3281933	3281954	Doc	32	516	15.0	16.0	15.5	1.9	542	chr3L	3281412	intron	CG12017 +	chr3L	3281683	intron	CG12017 +	chr3L	3281954	intron	CG12017 +	chr3L_32_3280001	chr3L_3280001	RAL-304_100b
2030	chr3L	3475053	3475058	chr3L	3475522	3475527	jockey	5	468	41.5	19.0	30.2	0.2	474	chr3L	3475053	intron	CG42324 +	chr3L	3475290	intron	CG42324 +	chr3L	3475527	intron	CG42324 +	chr3L_5_3475001	chr3L_3475001	RAL-304_100b
2031	chr3L	3475059	3475113	chr3L	3475521	3475556	jockey	49	462	11.0	17.0	14.0	3.3	497	chr3L	3475059	intron	CG42324 +	chr3L	3475308	intron	CG42324 +	chr3L	3475556	intron	CG42324 +	chr3L_49_3475001	chr3L_3475001	RAL-304_100b
2035	chr3L	3601275	3601278	chr3L	3606611	3606614	copia	4	5336	29.0	18.5	23.8	0.2	5339	chr3L	3601275	intron	Eip63E +	chr3L	3603944	intron	Eip63E +	chr3L	3606614	intron	Eip63E +	chr3L_4_3600001	chr3L_3600001	RAL-304_100b
2036	chr3L	3601281	3601294	chr3L	3606609	3606630	copia	11	5333	22.0	17.5	19.8	0.5	5349	chr3L	3601281	intron	Eip63E +	chr3L	3603956	intron	Eip63E +	chr3L	3606630	intron	Eip63E +	chr3L_11_3600001	chr3L_3600001	RAL-304_100b
2037	chr3L	3601297	3601331	chr3L	3606608	3606667	copia	19	5333	9.5	17.5	13.5	1.3	5370	chr3L	3601297	intron	Eip63E +	chr3L	3603982	intron	Eip63E +	chr3L	3606667	intron	Eip63E +	chr3L_19_3600001	chr3L_3600001	RAL-304_100b
2048	chr3L	3833713	3833769	chr3L	3833979	3834035	pogo	32	265	12.0	6.5	9.2	3.1	322	chr3L	3833713	intron	enc +	chr3L	3833874	intron	enc +	chr3L	3834035	intron	enc +	chr3L_32_3830001	chr3L_3830001	RAL-304_100b
2061	chr3L	4328727	4328765	chr3L	4336249	4336287	412	23	7520	11.0	17.5	14.2	1.5	7560	chr3L	4328727	intron	Cip4 -	chr3L	4332507	intron	Cip4 -	chr3L	4336287	exon	Cip4 -	chr3L_23_4330001	chr3L_4330001	RAL-304_100b
2090	chr3L	4901108	4901160	chr3L	4907323	4907375	diver	23	6214	16.0	16.0	16.0	1.4	6267	chr3L	4901108	intergenic	CG13704 +	chr3L	4904242	intergenic	not near genes	chr3L	4907375	intergenic	not near genes	chr3L_23_4900001	chr3L_4900001	RAL-304_100b
2093	chr3L	5034139	5034186	chr3L	5043309	5043363	roo	35	9172	17.5	9.5	13.5	2.4	9224	chr3L	5034139	intron	Con -	chr3L	5038751	intron	Con -	chr3L	5043363	intron	Con -	chr3L_35_5035001	chr3L_5035001	RAL-304_100b
2094	chr3L	5045435	5045445	chr3L	5050241	5050251	Doc	8	4806	28.5	18.5	23.5	0.3	4816	chr3L	5045435	intron	Con -	chr3L	5047843	intron	Con -	chr3L	5050251	intron	Con -	chr3L_8_5045001	chr3L_5045001	RAL-304_100b
2095	chr3L	5045446	5045486	chr3L	5050237	5050277	Doc	25	4803	9.5	16.0	12.8	1.8	4831	chr3L	5045446	intron	Con -	chr3L	5047862	intron	Con -	chr3L	5050277	intron	Con -	chr3L_25_5045001	chr3L_5045001	RAL-304_100b
2122	chr3L	5537704	5537751	chr3L	5538061	5538118	jockey	24	360	12.0	7.0	9.5	2.3	414	chr3L	5537704	intergenic	not near genes	chr3L	5537911	intergenic	CG10625 -	chr3L	5538118	intergenic	CG10625 -	chr3L_24_5535001	chr3L_5535001	RAL-304_100b
2132	chr3L	5910007	5910064	chr3L	5910273	5910304	pogo	52	264	7.5	20.5	14.0	3.5	297	chr3L	5910007	intron	CG13288 +	chr3L	5910156	intron	CG13288 +	chr3L	5910304	intron	CG13288 +	chr3L_52_5910001	chr3L_5910001	RAL-304_100b
2133	chr3L	5926294	5926346	chr3L	5926509	5926544	BS	42	211	13.5	24.0	18.8	2.1	250	chr3L	5926294	intron	Vap-33B +	chr3L	5926419	intron	Vap-33B +	chr3L	5926544	intron	Vap-33B +	chr3L_42_5925001	chr3L_5925001	RAL-304_100b
2134	chr3L	6001655	6001707	chr3L	6004377	6004432	jockey	24	2723	15.0	8.5	11.8	1.9	2777	chr3L	6001655	intron	PVRAP +	chr3L	6003044	intron	PVRAP +	chr3L	6004432	intron	PVRAP +	chr3L_24_6000001	chr3L_6000001	RAL-304_100b
2135	chr3L	6040341	6040394	chr3L	6042722	6042775	Doc	26	2380	13.5	12.0	12.8	1.9	2434	chr3L	6040341	intergenic	Jon65Aiv +	chr3L	6041558	intergenic	not near genes	chr3L	6042775	intergenic	not near genes	chr3L_26_6040001	chr3L_6040001	RAL-304_100b
2146	chr3L	6220898	6220930	chr3L	6230075	6230107	roo	35	9176	24.0	19.5	21.8	1.5	9209	chr3L	6220898	5` UTR	pncr008:3L +	chr3L	6225502	intergenic	not near genes	chr3L	6230107	intergenic	not near genes	chr3L_35_6225001	chr3L_6225001	RAL-304_100b
2147	chr3L	6220932	6220948	chr3L	6230068	6230111	roo	18	9170	16.0	16.0	16.0	1.1	9179	chr3L	6220932	5` UTR	pncr008:3L +	chr3L	6225522	intergenic	not near genes	chr3L	6230111	intergenic	not near genes	chr3L_18_6225001	chr3L_6225001	RAL-304_100b
2151	chr3L	6334983	6335043	chr3L	6335479	6335529	297	42	491	9.0	11.5	10.2	3.8	546	chr3L	6334983	intron	CG13300 -	chr3L	6335256	intron	CG13300 -	chr3L	6335529	intron	CG13300 -	chr3L_42_6335001	chr3L_6335001	RAL-304_100b
2153	chr3L	6405640	6405691	chr3L	6432129	6432175	roo	33	26486	13.0	14.0	13.5	2.3	26535	chr3L	6405640	intron	CG42747 +	chr3L	6418908	intron	CG42747 +	chr3L	6432175	intron	CG42747 +	chr3L_33_6415001	chr3L_6415001	RAL-304_100b
2155	chr3L	6620587	6620605	chr3L	6621052	6621070	Rt1c	18	464	17.0	35.5	26.2	0.7	483	chr3L	6620587	intergenic	not near genes	chr3L	6620828	intergenic	not near genes	chr3L	6621070	intergenic	not near genes	chr3L_18_6620001	chr3L_6620001	RAL-304_100b
2160	chr3L	6781099	6781153	chr3L	6783137	6783188	Doc	20	2035	9.0	0.0	4.5	3.6	2089	chr3L	6781099	intergenic	not near genes	chr3L	6782144	intergenic	not near genes	chr3L	6783188	intergenic	not near genes	chr3L_20_6780001	chr3L_6780001	RAL-304_100b
2165	chr3L	6855912	6855955	chr3L	6860717	6860765	Doc	38	4805	14.5	23.0	18.8	1.9	4853	chr3L	6855912	intergenic	not near genes	chr3L	6858338	intergenic	not near genes	chr3L	6860765	intergenic	not near genes	chr3L_38_6855001	chr3L_6855001	RAL-304_100b
2167	chr3L	6887495	6887546	chr3L	6895012	6895023	roo	45	7514	15.0	12.5	13.8	3.0	7528	chr3L	6887495	intergenic	not near genes	chr3L	6891259	intergenic	not near genes	chr3L	6895023	intergenic	not near genes	chr3L_45_6890001	chr3L_6890001	RAL-304_100b
2170	chr3L	6994895	6994914	chr3L	6995510	6995550	BS	13	631	1.0	14.5	7.8	1.5	655	chr3L	6994895	intergenic	bin +	chr3L	6995222	intergenic	not near genes	chr3L	6995550	intergenic	not near genes	chr3L_13_6995001	chr3L_6995001	RAL-304_100b
2185	chr3L	7377294	7377345	chr3L	7380424	7380475	297	39	3127	12.5	22.0	17.2	2.1	3181	chr3L	7377294	intron	SMSr -	chr3L	7378884	intron	SMSr -	chr3L	7380475	intron	SMSr -	chr3L_39_7375001	chr3L_7375001	RAL-304_100b
2192	chr3L	7498740	7498746	chr3L	7503542	7503548	F-element	6	4802	30.5	7.0	18.8	0.3	4808	chr3L	7498740	5` UTR	CG8539 -	chr3L	7501144	intergenic	not near genes	chr3L	7503548	intergenic	not near genes	chr3L_6_7500001	chr3L_7500001	RAL-304_100b
2193	chr3L	7498747	7498784	chr3L	7503539	7503586	F-element	24	4799	15.0	6.0	10.5	2.1	4839	chr3L	7498747	5` UTR	CG8539 -	chr3L	7501166	intergenic	not near genes	chr3L	7503586	intergenic	not near genes	chr3L_24_7500001	chr3L_7500001	RAL-304_100b
2199	chr3L	7793691	7793717	chr3L	7800768	7800794	297	18	7076	21.0	16.5	18.8	0.9	7103	chr3L	7793691	intron	CG32369 -	chr3L	7797242	intron	CG32369 -	chr3L	7800794	intron	CG32369 -	chr3L_18_7795001	chr3L_7795001	RAL-304_100b
2200	chr3L	7793719	7793743	chr3L	7800765	7800819	297	15	7072	13.5	14.5	14.0	1.0	7100	chr3L	7793719	intron	CG32369 -	chr3L	7797269	intron	CG32369 -	chr3L	7800819	intron	CG32369 -	chr3L_15_7795001	chr3L_7795001	RAL-304_100b
2207	chr3L	7886517	7886521	chr3L	7889051	7889064	Stalker4	5	2541	3.0	22.5	12.8	0.4	2547	chr3L	7886517	intron	CG32365 +	chr3L	7887790	intron	CG32365 +	chr3L	7889064	intron	CG32365 +	chr3L_5_7885001	chr3L_7885001	RAL-304_100b
2208	chr3L	7886534	7886545	chr3L	7889029	7889088	Stalker4	16	2533	1.5	11.5	6.5	2.1	2554	chr3L	7886534	intron	CG32365 +	chr3L	7887811	intron	CG32365 +	chr3L	7889088	intron	CG32365 +	chr3L_16_7885001	chr3L_7885001	RAL-304_100b
2209	chr3L	7916813	7916860	chr3L	7926009	7926056	roo	10	9196	6.0	9.0	7.5	1.2	9243	chr3L	7916813	3` UTR	syd -	chr3L	7921434	intron	syd -	chr3L	7926056	3` UTR	syd -	chr3L_10_7920001	chr3L_7920001	RAL-304_100b
2212	chr3L	7985350	7985396	chr3L	7987704	7987750	NOF	25	2353	9.5	10.5	10.0	2.3	2400	chr3L	7985350	intron	nmo +	chr3L	7986550	intron	nmo +	chr3L	7987750	intron	nmo +	chr3L_25_7985001	chr3L_7985001	RAL-304_100b
2214	chr3L	8019731	8019735	chr3L	8024157	8024176	NOF	4	4432	1.5	24.0	12.8	0.3	4445	chr3L	8019731	intron	nmo +	chr3L	8021954	intron	nmo +	chr3L	8024176	intron	nmo +	chr3L_4_8020001	chr3L_8020001	RAL-304_100b
2220	chr3L	8233570	8233589	chr3L	8238855	8238876	Rt1a	15	5283	17.0	39.0	28.0	0.5	5306	chr3L	8233570	intron	CG7213 -	chr3L	8236223	intron	CG7213 -	chr3L	8238876	intron,intron	CG7213 -,Dscam4 +	chr3L_15_8235001	chr3L_8235001	RAL-304_100b
2226	chr3L	8481747	8481795	chr3L	8490931	8490979	roo	25	9169	33.0	14.5	23.8	1.0	9232	chr3L	8481747	intron	CG43163 -	chr3L	8486363	intron	CG43163 -	chr3L	8490979	intron	CG43163 -	chr3L_25_8485001	chr3L_8485001	RAL-304_100b
2227	chr3L	8481796	8481806	chr3L	8490929	8490989	roo	13	9174	23.5	14.0	18.8	0.7	9193	chr3L	8481796	intron	CG43163 -	chr3L	8486392	intron	CG43163 -	chr3L	8490989	intron	CG43163 -	chr3L_13_8485001	chr3L_8485001	RAL-304_100b
2228	chr3L	8498296	8498325	chr3L	8505788	8505817	blood	21	7491	5.5	22.0	13.8	1.4	7521	chr3L	8498296	intron	CG43163 -	chr3L	8502056	intron	CG43163 -	chr3L	8505817	intron	CG43163 -	chr3L_21_8500001	chr3L_8500001	RAL-304_100b
2238	chr3L	8791256	8791265	chr3L	8796701	8796710	I-element	6	5445	38.5	0.5	19.5	0.3	5454	chr3L	8791256	exon	Fhos +	chr3L	8793983	intron	Fhos +	chr3L	8796710	intron	Fhos +	chr3L_6_8790001	chr3L_8790001	RAL-304_100b
2239	chr3L	8791266	8791275	chr3L	8796698	8796710	I-element	5	5440	33.0	0.5	16.8	0.3	5444	chr3L	8791266	exon	Fhos +	chr3L	8793988	intron	Fhos +	chr3L	8796710	intron	Fhos +	chr3L_5_8790001	chr3L_8790001	RAL-304_100b
2240	chr3L	8791283	8791309	chr3L	8796695	8796753	I-element	14	5431	14.5	0.5	7.5	1.6	5470	chr3L	8791283	exon	Fhos +	chr3L	8794018	intron	Fhos +	chr3L	8796753	intron	Fhos +	chr3L_14_8790001	chr3L_8790001	RAL-304_100b
2255	chr3L	9076901	9076955	chr3L	9084486	9084540	412	50	7582	13.5	18.0	15.8	3.0	7639	chr3L	9076901	exon	Tequila +	chr3L	9080720	intron	Tequila +	chr3L	9084540	exon	Tequila +	chr3L_50_9080001	chr3L_9080001	RAL-304_100b
2257	chr3L	9130531	9130582	chr3L	9134317	9134368	412	64	3780	26.5	22.5	24.5	2.5	3837	chr3L	9130531	intergenic	bol -	chr3L	9132450	intergenic	not near genes	chr3L	9134368	intergenic	Dhpr +	chr3L_64_9130001	chr3L_9130001	RAL-304_100b
2258	chr3L	9164690	9164729	chr3L	9166162	9166162	hobo	21	1482	15.5	0.5	8.0	2.3	1472	chr3L	9164690	intron	Rdl -	chr3L	9165426	intron	Rdl -	chr3L	9166162	intron	Rdl -	chr3L_21_9165001	chr3L_9165001	RAL-304_100b
2259	chr3L	9219226	9219237	chr3L	9219918	9219934	jockey	14	694	46.5	28.0	37.2	0.4	708	chr3L	9219226	intergenic	not near genes	chr3L	9219580	intergenic	not near genes	chr3L	9219934	intergenic	not near genes	chr3L_14_9215001	chr3L_9215001	RAL-304_100b
2260	chr3L	9219238	9219280	chr3L	9219914	9219915	jockey	48	686	19.5	25.0	22.2	2.1	677	chr3L	9219238	intergenic	not near genes	chr3L	9219576	intergenic	not near genes	chr3L	9219915	intergenic	not near genes	chr3L_48_9215001	chr3L_9215001	RAL-304_100b
2263	chr3L	9270593	9270651	chr3L	9278373	9278402	roo	54	7771	16.0	16.5	16.2	3.1	7809	chr3L	9270593	intron	GluRIB +	chr3L	9274498	intron	GluRIB +	chr3L	9278402	exon	GluRIB +	chr3L_54_9270001	chr3L_9270001	RAL-304_100b
2272	chr3L	9392448	9392451	chr3L	9395293	9395297	Doc	4	2846	19.0	18.0	18.5	0.2	2849	chr3L	9392448	intron	CG4080 -	chr3L	9393872	intron	CG4080 -	chr3L	9395297	intron	CG4080 -	chr3L_4_9390001	chr3L_9390001	RAL-304_100b
2275	chr3L	9443490	9443503	chr3L	9445306	9445319	S-element	6	1816	11.0	9.0	10.0	0.5	1829	chr3L	9443490	intron	CG33926 +	chr3L	9444404	intron	CG33926 +	chr3L	9445319	intron	CG33926 +	chr3L_6_9440001	chr3L_9440001	RAL-304_100b
2276	chr3L	9443504	9443539	chr3L	9445305	9445355	S-element	21	1815	5.5	9.0	7.2	2.6	1851	chr3L	9443504	intron	CG33926 +	chr3L	9444430	intron	CG33926 +	chr3L	9445355	intron	CG33926 +	chr3L_21_9440001	chr3L_9440001	RAL-304_100b
2278	chr3L	9501681	9501728	chr3L	9502192	9502239	roo	33	509	9.0	18.0	13.5	2.3	558	chr3L	9501681	intron	path -	chr3L	9501960	intron	path -	chr3L	9502239	intron	path -	chr3L_33_9500001	chr3L_9500001	RAL-304_100b
2281	chr3L	9533730	9533762	chr3L	9541315	9541347	412	18	7583	28.5	40.0	34.2	0.5	7617	chr3L	9533730	intergenic	not near genes	chr3L	9537538	intergenic	not near genes	chr3L	9541347	intergenic	not near genes	chr3L_18_9535001	chr3L_9535001	RAL-304_100b
2282	chr3L	9533766	9533786	chr3L	9541311	9541371	412	11	7565	15.0	37.0	26.0	0.4	7605	chr3L	9533766	intergenic	not near genes	chr3L	9537568	intergenic	not near genes	chr3L	9541371	intergenic	not near genes	chr3L_11_9535001	chr3L_9535001	RAL-304_100b
2283	chr3L	7411160	7411166	chr3L	9555382	9555383	roo	5	2144218	45.0	52.5	48.8	0.1	2144223	chr3L	7411160	intergenic	not near genes	chr3L	8483272	intron	CG43163 -	chr3L	9555383	intron	CG42673 +	chr3L_5_8480001	chr3L_8480001	RAL-304_100b
2287	chr3L	9571881	9571934	chr3L	9572250	9572306	jockey	25	371	11.0	13.0	12.0	1.9	425	chr3L	9571881	intron	CG42673 +	chr3L	9572094	intron	CG42673 +	chr3L	9572306	intron	CG42673 +	chr3L_25_9570001	chr3L_9570001	RAL-304_100b
2288	chr3L	9575886	9575892	chr3L	9580989	9580990	jockey	4	5102	51.5	10.5	31.0	0.1	5104	chr3L	9575886	intron	CG42673 +	chr3L	9578438	intron	CG42673 +	chr3L	9580990	intron	CG42673 +	chr3L_4_9575001	chr3L_9575001	RAL-304_100b
2289	chr3L	9575899	9575947	chr3L	9580986	9581050	jockey	25	5100	19.5	8.0	13.8	1.7	5151	chr3L	9575899	intron	CG42673 +	chr3L	9578474	intron	CG42673 +	chr3L	9581050	intron	CG42673 +	chr3L_25_9575001	chr3L_9575001	RAL-304_100b
2297	chr3L	9929645	9929700	chr3L	9938450	9938505	roo	39	8803	15.0	9.5	12.2	3.0	8860	chr3L	9929645	intron	CG34356 +	chr3L	9934075	intron	CG34356 +	chr3L	9938505	intron	CG34356 +	chr3L_39_9930001	chr3L_9930001	RAL-304_100b
2310	chr3L	10414920	10414972	chr3L	10417317	10417369	Doc	41	2394	9.0	10.5	9.8	3.8	2449	chr3L	10414920	intergenic	CG12362 +	chr3L	10416144	intergenic	not near genes	chr3L	10417369	intergenic	not near genes	chr3L_41_10415001	chr3L_10415001	RAL-304_100b
2336	chr3L	11087033	11087088	chr3L	11088846	11088902	S-element	34	1809	10.5	11.5	11.0	2.8	1869	chr3L	11087033	intron	JIL-1 -	chr3L	11087968	intron	JIL-1 -	chr3L	11088902	intron	JIL-1 -	chr3L_34_11085001	chr3L_11085001	RAL-304_100b
2337	chr3L	11105270	11105329	chr3L	11107006	11107039	X-element	35	1732	15.0	12.5	13.8	2.4	1769	chr3L	11105270	intergenic	not near genes	chr3L	11106154	intergenic	not near genes	chr3L	11107039	exon	CG32073 -	chr3L_35_11105001	chr3L_11105001	RAL-304_100b
2351	chr3L	11264448	11264493	chr3L	11271415	11271458	17.6	38	6970	16.0	9.0	12.5	2.8	7010	chr3L	11264448	intergenic	not near genes	chr3L	11267953	intergenic	not near genes	chr3L	11271458	intergenic	not near genes	chr3L_38_11265001	chr3L_11265001	RAL-304_100b
2353	chr3L	11329667	11329704	chr3L	11332897	11332934	jockey	22	3228	21.0	16.5	18.8	1.1	3267	chr3L	11329667	intergenic	not near genes	chr3L	11331300	intergenic	not near genes	chr3L	11332934	intergenic	not near genes	chr3L_22_11330001	chr3L_11330001	RAL-304_100b
2354	chr3L	11329706	11329726	chr3L	11332895	11332939	jockey	13	3219	13.5	15.5	14.5	0.8	3233	chr3L	11329706	intergenic	not near genes	chr3L	11331322	intergenic	not near genes	chr3L	11332939	intergenic	not near genes	chr3L_13_11330001	chr3L_11330001	RAL-304_100b
2363	chr3L	11564789	11564814	chr3L	11572409	11572424	412	12	7630	14.0	34.5	24.2	0.5	7635	chr3L	11564789	exon	CG33267 +	chr3L	11568606	intron	CG33267 +	chr3L	11572424	exon	CG33267 +	chr3L_12_11565001	chr3L_11565001	RAL-304_100b
2369	chr3L	11723069	11723110	chr3L	11727883	11727925	Doc	24	4818	15.5	11.5	13.5	1.7	4856	chr3L	11723069	3` UTR	Bmcp +	chr3L	11725497	intron	Bmcp +	chr3L	11727925	3` UTR	Bmcp +	chr3L_24_11725001	chr3L_11725001	RAL-304_100b
2387	chr3L	11864527	11864584	chr3L	11865847	11865904	pogo	42	1319	10.5	15.0	12.8	3.0	1377	chr3L	11864527	intron	CG44837 -	chr3L	11865216	intron	CG44837 -	chr3L	11865904	intron	CG44837 -	chr3L_42_11865001	chr3L_11865001	RAL-304_100b
2433	chr3L	12874901	12874957	chr3L	12877218	12877239	jockey	37	2314	9.0	7.5	8.2	4.0	2338	chr3L	12874901	intergenic	not near genes	chr3L	12876070	intergenic	not near genes	chr3L	12877239	intergenic	not near genes	chr3L_37_12875001	chr3L_12875001	RAL-304_100b
2437	chr3L	12919252	12919283	chr3L	12924761	12924777	Rt1c	12	5504	26.0	11.5	18.8	0.6	5525	chr3L	12919252	intergenic	not near genes	chr3L	12922014	intergenic	not near genes	chr3L	12924777	intergenic	not near genes	chr3L_12_12920001	chr3L_12920001	RAL-304_100b
2439	chr3L	12957764	12957796	chr3L	12962271	12962303	copia	27	4507	20.0	16.0	18.0	1.4	4539	chr3L	12957764	intergenic	not near genes	chr3L	12960034	intergenic	not near genes	chr3L	12962303	intergenic	not near genes	chr3L_27_12960001	chr3L_12960001	RAL-304_100b
2440	chr3L	12957799	12957816	chr3L	12962266	12962323	copia	16	4500	13.5	12.5	13.0	1.1	4524	chr3L	12957799	intergenic	not near genes	chr3L	12960061	intergenic	not near genes	chr3L	12962323	intergenic	not near genes	chr3L_16_12960001	chr3L_12960001	RAL-304_100b
2471	chr3L	13525136	13525170	chr3L	13532957	13532991	roo	30	7820	22.5	24.0	23.2	1.2	7855	chr3L	13525136	intergenic	not near genes	chr3L	13529064	intergenic	not near genes	chr3L	13532991	intergenic	not near genes	chr3L_30_13525001	chr3L_13525001	RAL-304_100b
2472	chr3L	13525172	13525190	chr3L	13532993	13532996	roo	9	7818	11.0	39.5	25.2	0.3	7824	chr3L	13525172	intergenic	not near genes	chr3L	13529084	intergenic	not near genes	chr3L	13532996	intergenic	not near genes	chr3L_9_13525001	chr3L_13525001	RAL-304_100b
2475	chr3L	13574606	13574613	chr3L	13580140	13580149	Rt1c	7	5536	49.5	25.5	37.5	0.2	5543	chr3L	13574606	intron	bru-3 -	chr3L	13577378	intron	bru-3 -	chr3L	13580149	intron	bru-3 -	chr3L_7_13575001	chr3L_13575001	RAL-304_100b
2476	chr3L	13574614	13574620	chr3L	13580132	13580157	Rt1c	13	5528	44.5	22.5	33.5	0.4	5543	chr3L	13574614	intron	bru-3 -	chr3L	13577386	intron	bru-3 -	chr3L	13580157	intron	bru-3 -	chr3L_13_13575001	chr3L_13575001	RAL-304_100b
2482	chr3L	13804525	13804569	chr3L	13822836	13822880	roo	28	18309	12.5	15.0	13.8	1.9	18355	chr3L	13804525	intergenic	not near genes	chr3L	13813702	intergenic	not near genes	chr3L	13822880	intergenic	not near genes	chr3L_28_13810001	chr3L_13810001	RAL-304_100b
2503	chr3L	14245560	14245594	chr3L	14245663	14245713	1360	36	115	21.5	13.5	17.5	1.9	153	chr3L	14245560	3` UTR	CR44561 -	chr3L	14245636	3` UTR	CR44561 -	chr3L	14245713	intergenic	CR44561 -,CR44560 +	chr3L_36_14245001	chr3L_14245001	RAL-304_100b
2504	chr3L	14267353	14267384	chr3L	14271813	14271833	F-element	14	4460	21.5	11.0	16.2	0.8	4480	chr3L	14267353	intergenic	not near genes	chr3L	14269593	intergenic	not near genes	chr3L	14271833	intergenic	not near genes	chr3L_14_14265001	chr3L_14265001	RAL-304_100b
2505	chr3L	14267385	14267396	chr3L	14271811	14271850	F-element	9	4438	14.5	11.0	12.8	0.7	4465	chr3L	14267385	intergenic	not near genes	chr3L	14269618	intergenic	not near genes	chr3L	14271850	intergenic	not near genes	chr3L_9_14265001	chr3L_14265001	RAL-304_100b
2507	chr3L	14295964	14295967	chr3L	14296469	14296478	roo	5	509	41.5	20.5	31.0	0.2	514	chr3L	14295964	intron	fz +	chr3L	14296221	intron	fz +	chr3L	14296478	intron	fz +	chr3L_5_14295001	chr3L_14295001	RAL-304_100b
2508	chr3L	14295968	14295970	chr3L	14296468	14296481	roo	8	506	38.0	20.5	29.2	0.3	513	chr3L	14295968	intron	fz +	chr3L	14296224	intron	fz +	chr3L	14296481	intron	fz +	chr3L_8_14295001	chr3L_14295001	RAL-304_100b
2509	chr3L	14295972	14296012	chr3L	14296467	14296523	roo	53	504	16.0	20.5	18.2	2.8	551	chr3L	14295972	intron	fz +	chr3L	14296248	intron	fz +	chr3L	14296523	intron	fz +	chr3L_53_14295001	chr3L_14295001	RAL-304_100b
2510	chr3L	14312015	14312022	chr3L	14316844	14316861	X-element	4	4834	31.0	24.5	27.8	0.1	4846	chr3L	14312015	exon	fz +	chr3L	14314438	intron	fz +	chr3L	14316861	intron	fz +	chr3L_4_14310001	chr3L_14310001	RAL-304_100b
2511	chr3L	14312023	14312058	chr3L	14316837	14316876	X-element	33	4819	15.5	19.0	17.2	1.8	4853	chr3L	14312023	exon	fz +	chr3L	14314450	intron	fz +	chr3L	14316876	intron	fz +	chr3L_33_14310001	chr3L_14310001	RAL-304_100b
2517	chr3L	14468429	14468476	chr3L	14473655	14473707	copia	37	5229	13.0	15.5	14.2	2.4	5278	chr3L	14468429	intron	bbg -	chr3L	14471068	intron	bbg -	chr3L	14473707	intron	bbg -	chr3L_37_14470001	chr3L_14470001	RAL-304_100b
2523	chr3L	14721164	14721209	chr3L	14723027	14723077	Rt1c	44	1863	16.5	22.0	19.2	2.2	1913	chr3L	14721164	intron	ome +	chr3L	14722120	intron	ome +	chr3L	14723077	intron	ome +	chr3L_44_14720001	chr3L_14720001	RAL-304_100b
2524	chr3L	14725583	14725616	chr3L	14728602	14728635	Doc	10	3019	10.5	17.5	14.0	0.7	3052	chr3L	14725583	intron	ome +	chr3L	14727109	intron	ome +	chr3L	14728635	intron	ome +	chr3L_10_14725001	chr3L_14725001	RAL-304_100b
2526	chr3L	14825136	14825154	chr3L	14832888	14832905	Stalker2	9	7750	1.5	13.5	7.5	1.1	7769	chr3L	14825136	intron	CG17839 +	chr3L	14829020	intron	CG17839 +	chr3L	14832905	intron	CG17839 +	chr3L_9_14825001	chr3L_14825001	RAL-304_100b
2531	chr3L	14970737	14970764	chr3L	14971072	14971099	F-element	8	335	7.5	4.5	6.0	1.1	362	chr3L	14970737	intergenic	Tom +	chr3L	14970918	intergenic	not near genes	chr3L	14971099	intergenic	not near genes	chr3L_8_14970001	chr3L_14970001	RAL-304_100b
2532	chr3L	15085027	15085038	chr3L	15086218	15086229	1360	9	1190	20.0	14.5	17.2	0.5	1202	chr3L	15085027	intron	cp309 -	chr3L	15085628	intron	cp309 -	chr3L	15086229	intron	cp309 -	chr3L_9_15085001	chr3L_15085001	RAL-304_100b
2533	chr3L	15085040	15085080	chr3L	15086216	15086271	1360	27	1182	9.0	13.0	11.0	2.2	1231	chr3L	15085040	intron	cp309 -	chr3L	15085656	intron	cp309 -	chr3L	15086271	intron	cp309 -	chr3L_27_15085001	chr3L_15085001	RAL-304_100b
2544	chr3L	15295749	15295798	chr3L	15298617	15298666	gypsy5	23	2866	10.5	14.0	12.2	1.7	2917	chr3L	15295749	intergenic	not near genes	chr3L	15297208	intergenic	not near genes	chr3L	15298666	intergenic	Best4 +	chr3L_23_15295001	chr3L_15295001	RAL-304_100b
2550	chr3L	15423741	15423783	chr3L	15426610	15426652	opus	37	2868	16.0	11.0	13.5	2.6	2911	chr3L	15423741	intergenic	not near genes	chr3L	15425196	intergenic	not near genes	chr3L	15426652	intergenic	not near genes	chr3L_37_15425001	chr3L_15425001	RAL-304_100b
2568	chr3L	15899208	15899209	chr3L	15899800	15899801	jockey	4	592	57.0	21.0	39.0	0.1	593	chr3L	15899208	intergenic	pHCl -	chr3L	15899504	intergenic	pHCl -	chr3L	15899801	intergenic	sff -	chr3L_4_15895001	chr3L_15895001	RAL-304_100b
2569	chr3L	15899218	15899221	chr3L	15899798	15899812	jockey	5	587	45.5	19.0	32.2	0.2	594	chr3L	15899218	intergenic	pHCl -	chr3L	15899515	intergenic	pHCl -	chr3L	15899812	intergenic	sff -	chr3L_5_15895001	chr3L_15895001	RAL-304_100b
2570	chr3L	15899222	15899222	chr3L	15899796	15899812	jockey	4	582	44.0	18.0	31.0	0.1	590	chr3L	15899222	intergenic	pHCl -	chr3L	15899517	intergenic	pHCl -	chr3L	15899812	intergenic	sff -	chr3L_4_15895001	chr3L_15895001	RAL-304_100b
2571	chr3L	15899229	15899262	chr3L	15899791	15899823	jockey	29	578	22.0	16.5	19.2	1.4	594	chr3L	15899229	intergenic	pHCl -	chr3L	15899526	intergenic	pHCl -	chr3L	15899823	intergenic	sff -	chr3L_29_15895001	chr3L_15895001	RAL-304_100b
2572	chr3L	15929129	15929176	chr3L	15938341	15938388	roo	36	9211	7.5	14.5	11.0	3.0	9259	chr3L	15929129	intron	Pka-C3 -	chr3L	15933758	intron	Pka-C3 -	chr3L	15938388	intron	Pka-C3 -	chr3L_36_15930001	chr3L_15930001	RAL-304_100b
2579	chr3L	16184088	16184136	chr3L	16188922	16188966	X-element	43	4842	14.5	17.0	15.8	2.6	4878	chr3L	16184088	intergenic	not near genes	chr3L	16186527	intergenic	not near genes	chr3L	16188966	intergenic	not near genes	chr3L_43_16185001	chr3L_16185001	RAL-304_100b
2595	chr3L	16443821	16443877	chr3L	16446187	16446225	Doc	28	2361	11.0	10.5	10.8	2.4	2404	chr3L	16443821	intron,intron	CG33158 +,dsx-c73A -	chr3L	16445023	intron,intron	CG33158 +,dsx-c73A -	chr3L	16446225	intron,intron	CG33158 +,dsx-c73A -	chr3L_28_16445001	chr3L_16445001	RAL-304_100b
2596	chr3L	16493950	16493967	chr3L	16494492	16494509	jockey	13	541	52.5	13.5	33.0	0.4	559	chr3L	16493950	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494230	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494509	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L_13_16490001	chr3L_16490001	RAL-304_100b
2597	chr3L	16493970	16494012	chr3L	16494491	16494553	jockey	22	532	19.5	13.0	16.2	1.3	583	chr3L	16493970	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494262	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494553	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L_22_16490001	chr3L_16490001	RAL-304_100b
2603	chr3L	16616487	16616541	chr3L	16621840	16621853	297	42	5347	8.5	11.5	10.0	3.8	5366	chr3L	16616487	3` UTR	Abl -	chr3L	16619170	3` UTR	Abl -	chr3L	16621853	3` UTR	Abl -	chr3L_42_16615001	chr3L_16615001	RAL-304_100b
2604	chr3L	16684002	16684046	chr3L	16689248	16689284	copia	21	5244	5.5	15.0	10.2	1.9	5282	chr3L	16684002	intron,intron	Lasp -,CG43954 -	chr3L	16686643	intron,intron	Lasp -,CG43954 -	chr3L	16689284	intron,intron,5` UTR	Lasp -,CG43954 -,CR45179 +	chr3L_21_16685001	chr3L_16685001	RAL-304_100b
2618	chr3L	16945705	16945718	chr3L	16954883	16954896	roo	15	9176	50.5	16.0	33.2	0.4	9191	chr3L	16945705	exon	Obp73a +	chr3L	16950300	intergenic	not near genes	chr3L	16954896	5` UTR	Nc73EF +	chr3L_15_16950001	chr3L_16950001	RAL-304_100b
2619	chr3L	16945720	16945734	chr3L	16954880	16954906	roo	14	9170	36.0	14.5	25.2	0.5	9186	chr3L	16945720	exon	Obp73a +	chr3L	16950313	intergenic	not near genes	chr3L	16954906	5` UTR	Nc73EF +	chr3L_14_16950001	chr3L_16950001	RAL-304_100b
2620	chr3L	16945735	16945761	chr3L	16954878	16954913	roo	28	9162	22.5	14.5	18.5	1.4	9178	chr3L	16945735	exon	Obp73a +	chr3L	16950324	intergenic	not near genes	chr3L	16954913	5` UTR	Nc73EF +	chr3L_28_16950001	chr3L_16950001	RAL-304_100b
2623	chr3L	17034913	17034957	chr3L	17035126	17035170	G2	18	213	7.5	7.0	7.2	2.2	257	chr3L	17034913	intergenic	not near genes	chr3L	17035042	intergenic	not near genes	chr3L	17035170	intergenic	beg +	chr3L_18_17035001	chr3L_17035001	RAL-304_100b
2624	chr3L	17084980	17085033	chr3L	17094154	17094207	roo	31	9173	15.0	16.5	15.8	1.8	9227	chr3L	17084980	intron	Rbp6 -	chr3L	17089594	intron	Rbp6 -	chr3L	17094207	intron	Rbp6 -	chr3L_31_17085001	chr3L_17085001	RAL-304_100b
2640	chr3L	17516954	17517008	chr3L	17524537	17524590	412	49	7578	19.0	15.5	17.2	2.7	7636	chr3L	17516954	intron	CG7564 +	chr3L	17520772	intron	CG7564 +	chr3L	17524590	3` UTR	CG7564 +	chr3L_49_17520001	chr3L_17520001	RAL-304_100b
2644	chr3L	17730830	17730878	chr3L	17738180	17738233	mdg1	34	7353	6.5	13.5	10.0	3.1	7403	chr3L	17730830	intron	Ccn +	chr3L	17734532	intron	Ccn +	chr3L	17738233	intron	Ccn +	chr3L_34_17730001	chr3L_17730001	RAL-304_100b
2648	chr3L	17799791	17799807	chr3L	17801603	17801618	S-element	6	1812	14.5	8.5	11.5	0.5	1827	chr3L	17799791	intron	NUCB1 -	chr3L	17800704	intron	NUCB1 -	chr3L	17801618	intron	NUCB1 -	chr3L_6_17800001	chr3L_17800001	RAL-304_100b
2649	chr3L	17799808	17799841	chr3L	17801596	17801653	S-element	17	1809	7.0	6.0	6.5	2.3	1845	chr3L	17799808	intron	NUCB1 -	chr3L	17800730	intron	NUCB1 -	chr3L	17801653	intron	NUCB1 -	chr3L_17_17800001	chr3L_17800001	RAL-304_100b
2652	chr3L	17918352	17918404	chr3L	17921175	17921208	opus	35	2821	19.5	11.0	15.2	2.2	2856	chr3L	17918352	intergenic	not near genes	chr3L	17919780	intergenic	not near genes	chr3L	17921208	intergenic	not near genes	chr3L_35_17915001	chr3L_17915001	RAL-304_100b
2659	chr3L	18047681	18047738	chr3L	18056762	18056820	roo	24	9080	8.0	6.5	7.2	2.9	9139	chr3L	18047681	intron	Eip75B -	chr3L	18052250	intron	Eip75B -	chr3L	18056820	intron	Eip75B -	chr3L_24_18050001	chr3L_18050001	RAL-304_100b
2669	chr3L	18189564	18189585	chr3L	18190190	18190211	S-element	14	625	29.0	15.0	22.0	0.6	647	chr3L	18189564	intergenic	not near genes	chr3L	18189888	intergenic	not near genes	chr3L	18190211	intergenic	not near genes	chr3L_14_18185001	chr3L_18185001	RAL-304_100b
2689	chr3L	18506116	18506160	chr3L	18509604	18509648	F-element	23	3484	10.5	10.0	10.2	2.1	3532	chr3L	18506116	intergenic	not near genes	chr3L	18507882	intergenic	not near genes	chr3L	18509648	intergenic	not near genes	chr3L_23_18505001	chr3L_18505001	RAL-304_100b
2690	chr3L	18514884	18514894	chr3L	18520100	18520110	BS	6	5216	19.0	12.5	15.8	0.4	5226	chr3L	18514884	intergenic	not near genes	chr3L	18517497	intergenic	not near genes	chr3L	18520110	intergenic	not near genes	chr3L_6_18515001	chr3L_18515001	RAL-304_100b
2691	chr3L	18514895	18514934	chr3L	18520099	18520150	BS	31	5214	10.5	11.5	11.0	2.6	5255	chr3L	18514895	intergenic	not near genes	chr3L	18517522	intergenic	not near genes	chr3L	18520150	intergenic	not near genes	chr3L_31_18515001	chr3L_18515001	RAL-304_100b
2692	chr3L	18528600	18528657	chr3L	18537786	18537843	roo	23	9186	8.5	5.5	7.0	2.9	9243	chr3L	18528600	intergenic	not near genes	chr3L	18533222	intergenic	not near genes	chr3L	18537843	intergenic	not near genes	chr3L_23_18530001	chr3L_18530001	RAL-304_100b
2695	chr3L	18593931	18593960	chr3L	18595936	18595965	Doc	17	2004	15.0	7.0	11.0	1.4	2034	chr3L	18593931	intergenic	term -	chr3L	18594948	intergenic	not near genes	chr3L	18595965	intergenic	CR45389 +	chr3L_17_18590001	chr3L_18590001	RAL-304_100b
2700	chr3L	18710788	18710792	chr3L	18718762	18718767	Stalker2	4	7975	0.0	8.0	4.0	0.8	7979	chr3L	18710788	intergenic	not near genes	chr3L	18714778	intergenic	not near genes	chr3L	18718767	intergenic	not near genes	chr3L_4_18710001	chr3L_18710001	RAL-304_100b
2706	chr3L	18772386	18772415	chr3L	18781092	18781121	roo	26	8706	27.0	15.0	21.0	1.2	8735	chr3L	18772386	intron	ftz-f1 -	chr3L	18776754	intron	ftz-f1 -	chr3L	18781121	intron	ftz-f1 -	chr3L_26_18775001	chr3L_18775001	RAL-304_100b
2707	chr3L	18772416	18772436	chr3L	18781090	18781142	roo	19	8699	12.0	14.0	13.0	1.4	8726	chr3L	18772416	intron	ftz-f1 -	chr3L	18776779	intron	ftz-f1 -	chr3L	18781142	intron	ftz-f1 -	chr3L_19_18775001	chr3L_18775001	RAL-304_100b
2710	chr3L	18833758	18833811	chr3L	18834947	18834998	1360	34	1186	11.5	14.5	13.0	2.4	1240	chr3L	18833758	intron	Indy -	chr3L	18834378	intron	Indy -	chr3L	18834998	intron	Indy -	chr3L_34_18830001	chr3L_18830001	RAL-304_100b
2714	chr3L	19008825	19008833	chr3L	19009188	19009196	jockey	6	363	31.0	22.0	26.5	0.2	371	chr3L	19008825	intron	nkd -	chr3L	19009010	intron	nkd -	chr3L	19009196	intron	nkd -	chr3L_6_19005001	chr3L_19005001	RAL-304_100b
2715	chr3L	19008834	19008871	chr3L	19009186	19009214	jockey	34	360	12.5	20.0	16.2	2.0	380	chr3L	19008834	intron	nkd -	chr3L	19009024	intron	nkd -	chr3L	19009214	intron	nkd -	chr3L_34_19005001	chr3L_19005001	RAL-304_100b
2718	chr3L	19115610	19115671	chr3L	19115815	19115821	BS	43	198	15.5	9.0	12.2	3.3	211	chr3L	19115610	intron	CG14082 -	chr3L	19115716	intron	CG14082 -	chr3L	19115821	intron	CG14082 -	chr3L_43_19115001	chr3L_19115001	RAL-304_100b
2719	chr3L	19117022	19117061	chr3L	19124494	19124533	mdg1	29	7468	19.0	18.5	18.8	1.5	7511	chr3L	19117022	intron	CG14082 -	chr3L	19120778	intron	CG14082 -	chr3L	19124533	intron	CG14082 -	chr3L_29_19120001	chr3L_19120001	RAL-304_100b
2720	chr3L	19117062	19117074	chr3L	19124493	19124546	mdg1	15	7465	10.0	18.0	14.0	1.0	7484	chr3L	19117062	intron	CG14082 -	chr3L	19120804	intron	CG14082 -	chr3L	19124546	intron	CG14082 -	chr3L_15_19120001	chr3L_19120001	RAL-304_100b
2725	chr3L	19208035	19208091	chr3L	19209434	19209480	Doc	43	1395	16.5	17.5	17.0	2.4	1445	chr3L	19208035	intron	fz2 -	chr3L	19208758	intron	fz2 -	chr3L	19209480	intron	fz2 -	chr3L_43_19205001	chr3L_19205001	RAL-304_100b
2734	chr3L	19390097	19390103	chr3L	19390213	19390219	INE-1	6	116	33.0	10.5	21.8	0.3	122	chr3L	19390097	intron	CG32206 -	chr3L	19390158	intron	CG32206 -	chr3L	19390219	intron	CG32206 -	chr3L_6_19390001	chr3L_19390001	RAL-304_100b
2735	chr3L	19398917	19398926	chr3L	19403659	19403667	F-element	9	4741	17.5	19.5	18.5	0.5	4750	chr3L	19398917	intron	CG32206 -	chr3L	19401292	intron	CG32206 -	chr3L	19403667	intron	CG32206 -	chr3L_9_19400001	chr3L_19400001	RAL-304_100b
2736	chr3L	19398927	19398931	chr3L	19403658	19403665	F-element	5	4738	14.5	19.5	17.0	0.3	4738	chr3L	19398927	intron	CG32206 -	chr3L	19401296	intron	CG32206 -	chr3L	19403665	intron	CG32206 -	chr3L_5_19400001	chr3L_19400001	RAL-304_100b
2747	chr3L	19820279	19820287	chr3L	19827853	19827861	412	5	7574	26.5	5.5	16.0	0.3	7582	chr3L	19820279	intron	Deaf1 +	chr3L	19824070	intron	Deaf1 +	chr3L	19827861	intron	Deaf1 +	chr3L_5_19820001	chr3L_19820001	RAL-304_100b
2748	chr3L	19820290	19820319	chr3L	19827849	19827893	412	18	7573	10.5	4.5	7.5	2.1	7603	chr3L	19820290	intron	Deaf1 +	chr3L	19824092	intron	Deaf1 +	chr3L	19827893	intron	Deaf1 +	chr3L_18_19820001	chr3L_19820001	RAL-304_100b
2749	chr3L	19848484	19848532	chr3L	19857699	19857724	roo	31	9213	15.0	14.5	14.8	2.0	9240	chr3L	19848484	intron	Papss +	chr3L	19853104	intron	Papss +	chr3L	19857724	intron	Papss +	chr3L_31_19850001	chr3L_19850001	RAL-304_100b
2755	chr3L	20113636	20113688	chr3L	20122918	20122970	roo	22	9281	8.0	9.0	8.5	2.3	9334	chr3L	20113636	intergenic	not near genes	chr3L	20118303	intergenic	not near genes	chr3L	20122970	intergenic	not near genes	chr3L_22_20115001	chr3L_20115001	RAL-304_100b
2760	chr3L	20257313	20257359	chr3L	20258452	20258504	pogo	41	1144	11.5	11.0	11.2	3.4	1191	chr3L	20257313	intron	rdgC +	chr3L	20257908	intron	rdgC +	chr3L	20258504	intron	rdgC +	chr3L_41_20255001	chr3L_20255001	RAL-304_100b
2761	chr3L	20321112	20321115	chr3L	20342904	20342908	17.6	4	21789	35.0	70.0	52.5	0.1	21796	chr3L	20321112	exon	Spn77Bb +	chr3L	20332010	intergenic	not near genes	chr3L	20342908	exon	Spn77Bc +	chr3L_4_20330001	chr3L_20330001	RAL-304_100b
2764	chr3L	20476733	20476784	chr3L	20484357	20484395	springer	28	7622	11.0	15.0	13.0	2.0	7662	chr3L	20476733	3` UTR	isoQC +	chr3L	20480564	intergenic	not near genes	chr3L	20484395	3` UTR	ZnT77C -	chr3L_28_20480001	chr3L_20480001	RAL-304_100b
2771	chr3L	20590039	20590096	chr3L	20590603	20590624	412	61	557	12.5	15.0	13.8	4.1	585	chr3L	20590039	intergenic	not near genes	chr3L	20590332	intergenic	not near genes	chr3L	20590624	intergenic	not near genes	chr3L_61_20590001	chr3L_20590001	RAL-304_100b
2783	chr3L	20821258	20821311	chr3L	20824894	20824947	NOF	31	3633	12.5	10.5	11.5	2.5	3689	chr3L	20821258	intron	Pka-R1 +	chr3L	20823102	intron	Pka-R1 +	chr3L	20824947	intron	Pka-R1 +	chr3L_31_20820001	chr3L_20820001	RAL-304_100b
2794	chr3L	21014892	21014907	chr3L	21023398	21023413	Tirant	13	8506	45.5	30.0	37.8	0.3	8521	chr3L	21014892	intron	skd -	chr3L	21019152	intron	skd -	chr3L	21023413	intron	skd -	chr3L_13_21015001	chr3L_21015001	RAL-304_100b
2795	chr3L	21014908	21014948	chr3L	21023394	21023437	Tirant	66	8498	14.0	26.5	20.2	3.1	8529	chr3L	21014908	intron	skd -	chr3L	21019172	intron	skd -	chr3L	21023437	intron	skd -	chr3L_66_21015001	chr3L_21015001	RAL-304_100b
2801	chr3L	21151840	21151894	chr3L	21156949	21157003	flea	48	5107	13.5	10.0	11.8	3.8	5163	chr3L	21151840	intron	Ac78C -	chr3L	21154422	intron	Ac78C -	chr3L	21157003	intron	Ac78C -	chr3L_48_21150001	chr3L_21150001	RAL-304_100b
2803	chr3L	21243723	21243735	chr3L	21251311	21251322	412	5	7588	28.0	25.0	26.5	0.2	7599	chr3L	21243723	intron	Eip78C +	chr3L	21247522	intron	Eip78C +	chr3L	21251322	intron	Eip78C +	chr3L_5_21245001	chr3L_21245001	RAL-304_100b
2804	chr3L	21243742	21243774	chr3L	21251310	21251325	412	18	7574	11.5	25.0	18.2	0.9	7583	chr3L	21243742	intron	Eip78C +	chr3L	21247534	intron	Eip78C +	chr3L	21251325	intron	Eip78C +	chr3L_18_21245001	chr3L_21245001	RAL-304_100b
2806	chr3L	21306124	21306136	chr3L	21315308	21315320	roo	5	9184	30.0	8.5	19.2	0.2	9196	chr3L	21306124	3` UTR	CG7632 +	chr3L	21310722	intron	Pc -	chr3L	21315320	3` UTR	Pc -	chr3L_5_21310001	chr3L_21310001	RAL-304_100b
2807	chr3L	21306137	21306180	chr3L	21315306	21315335	roo	22	9178	15.5	7.5	11.5	1.8	9198	chr3L	21306137	3` UTR,3` UTR	CG7632 +,Pc -	chr3L	21310736	intron	Pc -	chr3L	21315335	3` UTR	Pc -	chr3L_22_21310001	chr3L_21310001	RAL-304_100b
2810	chr3L	21361701	21361753	chr3L	21362680	21362732	G2	20	974	9.5	11.5	10.5	1.7	1031	chr3L	21361701	intergenic	CG32440 +	chr3L	21362216	intergenic	not near genes	chr3L	21362732	intergenic	not near genes	chr3L_20_21360001	chr3L_21360001	RAL-304_100b
2811	chr3L	21372698	21372754	chr3L	21379231	21379286	McClintock	18	6529	3.5	9.0	6.2	2.5	6588	chr3L	21372698	intergenic	not near genes	chr3L	21375992	intergenic	not near genes	chr3L	21379286	intergenic	not near genes	chr3L_18_21375001	chr3L_21375001	RAL-304_100b
2828	chr3L	21749293	21749302	chr3L	21754478	21754487	Doc	8	5185	62.0	17.5	39.8	0.2	5194	chr3L	21749293	intron	Syn1 -	chr3L	21751890	intron	Syn1 -	chr3L	21754487	intron	Syn1 -	chr3L_8_21750001	chr3L_21750001	RAL-304_100b
2829	chr3L	21749303	21749304	chr3L	21754477	21754489	Doc	4	5180	59.5	16.5	38.0	0.1	5186	chr3L	21749303	intron	Syn1 -	chr3L	21751896	intron	Syn1 -	chr3L	21754489	intron	Syn1 -	chr3L_4_21750001	chr3L_21750001	RAL-304_100b
2830	chr3L	21749305	21749335	chr3L	21754472	21754490	Doc	27	5175	35.0	14.0	24.5	1.1	5185	chr3L	21749305	intron	Syn1 -	chr3L	21751898	intron	Syn1 -	chr3L	21754490	intron	Syn1 -	chr3L_27_21750001	chr3L_21750001	RAL-304_100b
2831	chr3L	21749337	21749353	chr3L	21754471	21754494	Doc	12	5158	20.5	13.5	17.0	0.7	5157	chr3L	21749337	intron	Syn1 -	chr3L	21751916	intron	Syn1 -	chr3L	21754494	intron	Syn1 -	chr3L_12_21750001	chr3L_21750001	RAL-304_100b
2843	chr3L	22099655	22099665	chr3L	22105866	22105873	3S18	5	6210	35.0	12.5	23.8	0.2	6218	chr3L	22099655	intergenic	not near genes	chr3L	22102764	intergenic	not near genes	chr3L	22105873	intergenic	not near genes	chr3L_5_22100001	chr3L_22100001	RAL-304_100b
2844	chr3L	22099666	22099705	chr3L	22105862	22105915	3S18	39	6203	16.5	11.5	14.0	2.6	6249	chr3L	22099666	intergenic	not near genes	chr3L	22102790	intergenic	not near genes	chr3L	22105915	intergenic	not near genes	chr3L_39_22100001	chr3L_22100001	RAL-304_100b
2855	chr3L	22555745	22555802	chr3L	22563240	22563241	blood	52	7486	14.0	12.5	13.2	3.7	7496	chr3L	22555745	intergenic	not near genes	chr3L	22559493	intergenic	not near genes	chr3L	22563241	intergenic	not near genes	chr3L_52_22555001	chr3L_22555001	RAL-304_100b
2857	chr3L	22577597	22577611	chr3L	22582410	22582424	Doc	14	4812	54.5	24.0	39.2	0.3	4827	chr3L	22577597	intergenic	not near genes	chr3L	22580010	intergenic	not near genes	chr3L	22582424	3` UTR	CG14459 -	chr3L_14_22580001	chr3L_22580001	RAL-304_100b
2858	chr3L	22577612	22577647	chr3L	22582408	22582450	Doc	49	4807	23.0	23.0	23.0	2.0	4838	chr3L	22577612	intergenic	not near genes	chr3L	22580031	intergenic	not near genes	chr3L	22582450	3` UTR	CG14459 -	chr3L_49_22580001	chr3L_22580001	RAL-304_100b
2859	chr3L	22617169	22617222	chr3L	22624641	22624683	blood	35	7473	14.5	14.0	14.2	2.3	7514	chr3L	22617169	intron	CG14459 -	chr3L	22620926	intron	CG14459 -	chr3L	22624683	intron	CG14459 -	chr3L_35_22620001	chr3L_22620001	RAL-304_100b
2865	chr3L	22761363	22761414	chr3L	22766822	22766843	Ivk	26	5457	14.0	16.0	15.0	1.6	5480	chr3L	22761363	intron	SPoCk +	chr3L	22764103	intron	SPoCk +	chr3L	22766843	intron	SPoCk +	chr3L_26_22760001	chr3L_22760001	RAL-304_100b
2871	chr3L	22865962	22865986	chr3L	22867120	22867144	Doc	17	1158	23.0	14.0	18.5	0.9	1182	chr3L	22865962	intron	CG33170 +	chr3L	22866553	intron	CG33170 +	chr3L	22867144	intron	CG33170 +	chr3L_17_22865001	chr3L_22865001	RAL-304_100b
2872	chr3L	22865987	22866012	chr3L	22867115	22867163	Doc	16	1155	12.0	12.0	12.0	1.2	1176	chr3L	22865987	intron	CG33170 +	chr3L	22866575	intron	CG33170 +	chr3L	22867163	intron	CG33170 +	chr3L_16_22865001	chr3L_22865001	RAL-304_100b
2889	chr3L	22989838	22989895	chr3L	22996837	22996894	297	42	6995	8.0	10.5	9.2	4.1	7056	chr3L	22989838	intergenic	not near genes	chr3L	22993366	intergenic	not near genes	chr3L	22996894	intergenic	not near genes	chr3L_42_22990001	chr3L_22990001	RAL-304_100b
2890	chr3L	23165889	23165908	chr3L	23173358	23173372	Quasimodo	7	7469	26.5	13.0	19.8	0.3	7483	chr3L	23165889	intergenic	not near genes	chr3L	23169630	intergenic	not near genes	chr3L	23173372	intergenic	not near genes	chr3L_7_23165001	chr3L_23165001	RAL-304_100b
2892	chr3L	24012387	24012430	chr3L	24020753	24020796	roo	20	8365	11.0	11.5	11.2	1.6	8409	chr3L	24012387	intergenic	not near genes	chr3L	24016592	intergenic	not near genes	chr3L	24020796	intergenic	not near genes	chr3L_20_24015001	chr3L_24015001	RAL-304_100b
2893	chr3L	24168769	24168822	chr3L	24176119	24176175	ZAM	44	7347	11.5	21.5	16.5	2.5	7406	chr3L	24168769	intron	Snap25 +	chr3L	24172472	intron	Snap25 +	chr3L	24176175	intron	Snap25 +	chr3L_44_24170001	chr3L_24170001	RAL-304_100b
2894	chr3L	24791874	24791912	chr3L	24796677	24796716	Doc	16	4803	11.0	7.5	9.2	1.6	4842	chr3L	24791874	intergenic	not near genes	chr3L	24794295	intergenic	not near genes	chr3L	24796716	intergenic	not near genes	chr3L_16_24790001	chr3L_24790001	RAL-304_100b
2902	chr3L	21448026	21448026	chr3L	25486593	25486594	Cr1a	4	4038567	56.0	25.5	40.8	0.1	4038568	chr3L	21448026	3` UTR	Syx7 +	chr3L	23467310	intergenic	not near genes	chr3L	25486594	intron	CG41343 -	chr3L_4_23465001	chr3L_23465001	RAL-304_100b
2904	chr3L	23311678	23311683	chr3L	26026738	26026743	G6	4	2715060	95.0	90.0	92.5	0.0	2715065	chr3L	23311678	intergenic	not near genes	chr3L	24669210	intergenic	not near genes	chr3L	26026743	intergenic	not near genes	chr3L_4_24665001	chr3L_24665001	RAL-304_100b
2911	chr3R	1252409	1252450	chr3R	1266233	1266237	297	5	13813	50.0	34.0	42.0	0.1	13828	chr3R	1252409	intergenic	not near genes	chr3R	1259323	intergenic	not near genes	chr3R	1266237	intergenic	not near genes	chr3R_5_1255001	chr3R_1255001	RAL-304_100b
2913	chr3R	1867169	1867174	chr3R	1954898	1954920	Doc3-element	5	87748	60.0	18.5	39.2	0.1	87751	chr3R	1867169	intron	CG42623 +	chr3R	1911044	intron	CG42623 +	chr3R	1954920	intergenic	not near genes	chr3R_5_1910001	chr3R_1910001	RAL-304_100b
2916	chr3R	1511856	1511859	chr3R	2516750	2516774	297	5	1004904	31.0	68.5	49.8	0.1	1004918	chr3R	1511856	intergenic	not near genes	chr3R	2014315	intergenic	not near genes	chr3R	2516774	intergenic	not near genes	chr3R_5_2010001	chr3R_2010001	RAL-304_100b
2923	chr3R	3989286	3989307	chr3R	4068940	4068951	mdg1	8	79646	48.0	34.5	41.2	0.2	79665	chr3R	3989286	intergenic	not near genes	chr3R	4029118	intergenic	not near genes	chr3R	4068951	intergenic	not near genes	chr3R_8_4025001	chr3R_4025001	RAL-304_100b
2924	chr3R	4105016	4105068	chr3R	4110245	4110297	copia	11	5222	12.5	16.0	14.2	0.7	5281	chr3R	4105016	intergenic	not near genes	chr3R	4107656	intergenic	not near genes	chr3R	4110297	intergenic	not near genes	chr3R_11_4105001	chr3R_4105001	RAL-304_100b
2926	chr3R	4206044	4206097	chr3R	4211644	4211697	mdg3	30	5595	15.5	9.5	12.5	2.2	5653	chr3R	4206044	intron	CG14636 -	chr3R	4208870	intron	CG14636 -	chr3R	4211697	intron	CG14636 -	chr3R_30_4205001	chr3R_4205001	RAL-304_100b
2927	chr3R	4366735	4366744	chr3R	4375143	4375152	roo	5	8407	16.0	8.0	12.0	0.4	8417	chr3R	4366735	3` UTR	CG1090 +	chr3R	4370944	intergenic	not near genes	chr3R	4375152	5` UTR	CR44922 +	chr3R_5_4370001	chr3R_4370001	RAL-304_100b
2928	chr3R	4366745	4366787	chr3R	4375142	4375154	roo	24	8403	5.0	8.0	6.5	3.2	8409	chr3R	4366745	3` UTR	CG1090 +	chr3R	4370950	intergenic	not near genes	chr3R	4375154	5` UTR	CR44922 +	chr3R_24_4370001	chr3R_4370001	RAL-304_100b
2929	chr3R	4408388	4408443	chr3R	4412717	4412737	Juan	35	4324	17.5	16.5	17.0	1.9	4349	chr3R	4408388	intron	CG32944 -	chr3R	4410562	intron	CG32944 -	chr3R	4412737	intron	CG32944 -	chr3R_35_4410001	chr3R_4410001	RAL-304_100b
2933	chr3R	4609524	4609581	chr3R	4610713	4610755	1360	53	1187	13.5	16.0	14.8	3.4	1231	chr3R	4609524	intergenic	not near genes	chr3R	4610140	intergenic	not near genes	chr3R	4610755	intergenic	not near genes	chr3R_53_4610001	chr3R_4610001	RAL-304_100b
2939	chr3R	4887453	4887486	chr3R	4894855	4894858	rover	29	7398	22.5	14.0	18.2	1.5	7405	chr3R	4887453	intergenic	not near genes	chr3R	4891156	intergenic	not near genes	chr3R	4894858	intergenic	not near genes	chr3R_29_4890001	chr3R_4890001	RAL-304_100b
2940	chr3R	4887488	4887512	chr3R	4894854	4894909	rover	17	7392	14.0	13.5	13.8	1.1	7421	chr3R	4887488	intergenic	not near genes	chr3R	4891198	intergenic	not near genes	chr3R	4894909	intergenic	not near genes	chr3R_17_4890001	chr3R_4890001	RAL-304_100b
2945	chr3R	4972940	4972943	chr3R	4973084	4973087	jockey	5	144	26.0	11.5	18.8	0.3	147	chr3R	4972940	intergenic	not near genes	chr3R	4973014	intergenic	not near genes	chr3R	4973087	intergenic	not near genes	chr3R_5_4970001	chr3R_4970001	RAL-304_100b
2948	chr3R	5045821	5045877	chr3R	5052947	5053004	HMS-Beagle	25	7126	16.0	7.0	11.5	2.0	7183	chr3R	5045821	3` UTR	CR43635 -	chr3R	5049412	intergenic	not near genes	chr3R	5053004	intergenic	CR45588 -	chr3R_25_5045001	chr3R_5045001	RAL-304_100b
2949	chr3R	5067954	5068011	chr3R	5073496	5073513	mdg3	34	5540	13.0	8.5	10.8	2.9	5559	chr3R	5067954	intergenic	not near genes	chr3R	5070734	intergenic	not near genes	chr3R	5073513	intergenic	not near genes	chr3R_34_5070001	chr3R_5070001	RAL-304_100b
2959	chr3R	5445934	5445994	chr3R	5452419	5452479	Burdock	51	6484	13.0	12.0	12.5	3.8	6545	chr3R	5445934	intron	CG14669 +	chr3R	5449206	intron	CG14669 +	chr3R	5452479	intron	CG14669 +	chr3R_51_5445001	chr3R_5445001	RAL-304_100b
2969	chr3R	5745989	5746045	chr3R	5746255	5746311	pogo	57	264	16.5	18.5	17.5	3.1	322	chr3R	5745989	3` UTR	Madm +	chr3R	5746150	3` UTR	Madm +	chr3R	5746311	3` UTR	Madm +	chr3R_57_5745001	chr3R_5745001	RAL-304_100b
2970	chr3R	5746990	5747015	chr3R	5753206	5753231	diver	11	6213	16.0	12.0	14.0	0.7	6241	chr3R	5746990	intergenic	Madm +	chr3R	5750110	intergenic	not near genes	chr3R	5753231	intergenic	CG2091 -	chr3R_11_5750001	chr3R_5750001	RAL-304_100b
2971	chr3R	5747016	5747045	chr3R	5753202	5753261	diver	21	6212	8.5	10.0	9.2	2.1	6245	chr3R	5747016	intergenic	Madm +	chr3R	5750138	intergenic	not near genes	chr3R	5753261	intergenic	CG2091 -	chr3R_21_5750001	chr3R_5750001	RAL-304_100b
2973	chr3R	5809088	5809144	chr3R	5809354	5809410	pogo	50	262	14.5	11.0	12.8	3.6	322	chr3R	5809088	3` UTR	CG11000 +	chr3R	5809249	3` UTR	CG11000 +	chr3R	5809410	3` UTR	CG11000 +	chr3R_50_5805001	chr3R_5805001	RAL-304_100b
2974	chr3R	5822357	5822393	chr3R	5823549	5823585	1360	34	1191	23.0	18.5	20.8	1.6	1228	chr3R	5822357	3` UTR	CG2023 -	chr3R	5822971	3` UTR	CG2023 -	chr3R	5823585	3` UTR	CG2023 -	chr3R_34_5820001	chr3R_5820001	RAL-304_100b
2975	chr3R	5822398	5822411	chr3R	5823553	5823583	1360	14	1184	11.5	20.0	15.8	0.8	1185	chr3R	5822398	3` UTR	CG2023 -	chr3R	5822990	3` UTR	CG2023 -	chr3R	5823583	3` UTR	CG2023 -	chr3R_14_5820001	chr3R_5820001	RAL-304_100b
2977	chr3R	5927538	5927556	chr3R	5927803	5927821	pogo	5	265	32.0	16.0	24.0	0.2	283	chr3R	5927538	intron	CG34113 -	chr3R	5927680	intron	CG34113 -	chr3R	5927821	intron	CG34113 -	chr3R_5_5925001	chr3R_5925001	RAL-304_100b
2978	chr3R	5927557	5927590	chr3R	5927799	5927837	pogo	40	255	14.0	14.5	14.2	2.6	280	chr3R	5927557	intron	CG34113 -	chr3R	5927697	intron	CG34113 -	chr3R	5927837	intron	CG34113 -	chr3R_40_5925001	chr3R_5925001	RAL-304_100b
2983	chr3R	6015944	6015994	chr3R	6024470	6024520	Tirant	65	8522	15.5	16.0	15.8	3.9	8576	chr3R	6015944	intergenic	not near genes	chr3R	6020232	intergenic	not near genes	chr3R	6024520	intergenic	not near genes	chr3R_65_6020001	chr3R_6020001	RAL-304_100b
2990	chr3R	6121166	6121180	chr3R	6121408	6121423	BS	9	243	0.0	14.5	7.2	1.1	257	chr3R	6121166	intergenic	not near genes	chr3R	6121294	intergenic	not near genes	chr3R	6121423	intergenic	not near genes	chr3R_9_6120001	chr3R_6120001	RAL-304_100b
2991	chr3R	6121182	6121183	chr3R	6121406	6121426	BS	5	239	0.0	14.5	7.2	0.6	244	chr3R	6121182	intergenic	not near genes	chr3R	6121304	intergenic	not near genes	chr3R	6121426	intergenic	not near genes	chr3R_5_6120001	chr3R_6120001	RAL-304_100b
2992	chr3R	6158483	6158536	chr3R	6167091	6167144	Tirant	29	8606	19.5	13.0	16.2	1.7	8661	chr3R	6158483	intergenic	not near genes	chr3R	6162814	intergenic	not near genes	chr3R	6167144	intergenic	CG1077 +	chr3R_29_6160001	chr3R_6160001	RAL-304_100b
2994	chr3R	6175147	6175207	chr3R	6182444	6182472	HMS-Beagle2	47	7290	8.0	9.5	8.8	4.8	7325	chr3R	6175147	intergenic	Osi1 +	chr3R	6178810	intron	CR45194 +	chr3R	6182472	intergenic	CR45194 +	chr3R_47_6175001	chr3R_6175001	RAL-304_100b
3000	chr3R	6510012	6510050	chr3R	6515105	6515156	jockey	28	5102	12.0	5.0	8.5	2.9	5144	chr3R	6510012	intergenic	not near genes	chr3R	6512584	intergenic	not near genes	chr3R	6515156	intergenic	not near genes	chr3R_28_6510001	chr3R_6510001	RAL-304_100b
3014	chr3R	6737476	6737526	chr3R	6739284	6739338	Doc	21	1808	19.0	10.5	14.8	1.3	1862	chr3R	6737476	intron	pb -	chr3R	6738407	intron	pb -	chr3R	6739338	intron	pb -	chr3R_21_6735001	chr3R_6735001	RAL-304_100b
3032	chr3R	6997076	6997142	chr3R	9418239	9418239	F-element	7	2421146	38.0	75.0	56.5	0.1	2421163	chr3R	6997076	intron	Antp -	chr3R	8207658	intergenic	not near genes	chr3R	9418239	intron	ps +	chr3R_7_8205001	chr3R_8205001	RAL-304_100b
3056	chr3R	7694554	7694608	chr3R	7713640	7713694	invader3	16	19084	7.0	14.5	10.8	1.4	19140	chr3R	7694554	3` UTR	Nlg1 +	chr3R	7704124	intergenic	not near genes	chr3R	7713694	intergenic	not near genes	chr3R_16_7700001	chr3R_7700001	RAL-304_100b
3059	chr3R	7729451	7729457	chr3R	7737406	7737415	Stalker2	7	7961	27.5	11.0	19.2	0.3	7964	chr3R	7729451	intergenic	not near genes	chr3R	7733433	intergenic	not near genes	chr3R	7737415	intergenic	not near genes	chr3R_7_7730001	chr3R_7730001	RAL-304_100b
3060	chr3R	7729460	7729491	chr3R	7737402	7737454	Stalker2	28	7959	15.5	10.0	12.8	2.0	7994	chr3R	7729460	intergenic	not near genes	chr3R	7733457	intergenic	not near genes	chr3R	7737454	intergenic	not near genes	chr3R_28_7730001	chr3R_7730001	RAL-304_100b
3068	chr3R	7973296	7973342	chr3R	7974383	7974414	1360	35	1085	12.0	9.0	10.5	3.0	1118	chr3R	7973296	intergenic	not near genes	chr3R	7973855	intergenic	not near genes	chr3R	7974414	3` UTR	CD98hc -	chr3R_35_7970001	chr3R_7970001	RAL-304_100b
3071	chr3R	8090551	8090570	chr3R	8094080	8094084	297	11	3526	10.0	13.5	11.8	0.9	3533	chr3R	8090551	intergenic	CR44330 +	chr3R	8092318	intergenic	not near genes	chr3R	8094084	intergenic	CG7900 +	chr3R_11_8090001	chr3R_8090001	RAL-304_100b
3072	chr3R	8094389	8094425	chr3R	8099717	8099740	Transpac	31	5329	20.5	15.5	18.0	1.6	5351	chr3R	8094389	intron	CG7900 +	chr3R	8097064	intron	CG7900 +	chr3R	8099740	intron	CG7900 +	chr3R_31_8095001	chr3R_8095001	RAL-304_100b
3073	chr3R	8094427	8094436	chr3R	8099715	8099766	Transpac	10	5325	14.5	15.0	14.8	0.6	5339	chr3R	8094427	intron	CG7900 +	chr3R	8097096	intron	CG7900 +	chr3R	8099766	intron	CG7900 +	chr3R_10_8095001	chr3R_8095001	RAL-304_100b
3074	chr3R	8101738	8101788	chr3R	8104847	8104897	G2	43	3103	16.0	13.5	14.8	2.7	3159	chr3R	8101738	exon	CG7900 +	chr3R	8103318	intron	CG7900 +	chr3R	8104897	3` UTR	CG7900 +	chr3R_43_8100001	chr3R_8100001	RAL-304_100b
3077	chr3R	8207534	8207588	chr3R	8208398	8208430	F-element	43	863	12.5	13.0	12.8	3.1	896	chr3R	8207534	intergenic	not near genes	chr3R	8207982	intergenic	not near genes	chr3R	8208430	intergenic	not near genes	chr3R_43_8205001	chr3R_8205001	RAL-304_100b
3081	chr3R	8402983	8403001	chr3R	8412174	8412192	roo	19	9189	38.0	26.5	32.2	0.6	9209	chr3R	8402983	intron	CG45263 -	chr3R	8407588	intron	CG45263 -	chr3R	8412192	intron	CG45263 -	chr3R_19_8405001	chr3R_8405001	RAL-304_100b
3082	chr3R	8403002	8403039	chr3R	8412173	8412209	roo	30	9180	16.0	25.5	20.8	1.4	9207	chr3R	8403002	intron	CG45263 -	chr3R	8407606	intron	CG45263 -	chr3R	8412209	intron	CG45263 -	chr3R_30_8405001	chr3R_8405001	RAL-304_100b
3086	chr3R	8570452	8570507	chr3R	8575113	8575155	HMS-Beagle	36	4655	10.0	11.5	10.8	3.1	4703	chr3R	8570452	intergenic	not near genes	chr3R	8572804	intergenic	not near genes	chr3R	8575155	intergenic	not near genes	chr3R_36_8570001	chr3R_8570001	RAL-304_100b
3087	chr3R	8601751	8601762	chr3R	8610926	8610940	roo	9	9175	34.5	16.0	25.2	0.3	9189	chr3R	8601751	intron	5-HT2B +	chr3R	8606346	intron	5-HT2B +	chr3R	8610940	intron	5-HT2B +	chr3R_9_8605001	chr3R_8605001	RAL-304_100b
3088	chr3R	8601763	8601780	chr3R	8610924	8610953	roo	18	9172	25.0	15.0	20.0	0.9	9190	chr3R	8601763	intron	5-HT2B +	chr3R	8606358	intron	5-HT2B +	chr3R	8610953	intron	5-HT2B +	chr3R_18_8605001	chr3R_8605001	RAL-304_100b
3089	chr3R	8601782	8601799	chr3R	8610921	8610971	roo	21	9165	17.0	14.5	15.8	1.2	9189	chr3R	8601782	intron	5-HT2B +	chr3R	8606376	intron	5-HT2B +	chr3R	8610971	intron	5-HT2B +	chr3R_21_8605001	chr3R_8605001	RAL-304_100b
3091	chr3R	8707331	8707384	chr3R	8709797	8709823	jockey	64	2462	28.0	24.0	26.0	2.4	2492	chr3R	8707331	intergenic	not near genes	chr3R	8708577	intergenic	not near genes	chr3R	8709823	intergenic	not near genes	chr3R_64_8705001	chr3R_8705001	RAL-304_100b
3094	chr3R	8898183	8898213	chr3R	8913802	8913821	297	16	15615	10.5	18.5	14.5	1.0	15638	chr3R	8898183	intron	pyd -	chr3R	8906002	intron	pyd -	chr3R	8913821	intron	pyd -	chr3R_16_8905001	chr3R_8905001	RAL-304_100b
3106	chr3R	9278768	9278816	chr3R	9284043	9284060	Rt1a	47	5279	16.0	22.5	19.2	2.3	5292	chr3R	9278768	intergenic	not near genes	chr3R	9281414	intergenic	not near genes	chr3R	9284060	intergenic	not near genes	chr3R_47_9280001	chr3R_9280001	RAL-304_100b
3107	chr3R	9304505	9304529	chr3R	9311817	9311825	Stalker4	8	7309	38.0	14.0	26.0	0.3	7320	chr3R	9304505	intron	CG8861 -	chr3R	9308165	intron	CG8861 -	chr3R	9311825	intron	CG8861 -	chr3R_8_9305001	chr3R_9305001	RAL-304_100b
3108	chr3R	9319555	9319605	chr3R	9320015	9320045	jockey	32	457	12.5	22.5	17.5	1.7	490	chr3R	9319555	intron	CG8861 -	chr3R	9319800	intron	CG8861 -	chr3R	9320045	intron	CG8861 -	chr3R_32_9315001	chr3R_9315001	RAL-304_100b
3110	chr3R	9361807	9361845	chr3R	9362063	9362111	pogo	16	265	8.5	11.0	9.8	1.5	304	chr3R	9361807	3` UTR	CG45050 +	chr3R	9361959	3` UTR	CG45050 +	chr3R	9362111	3` UTR	CG45050 +	chr3R_16_9360001	chr3R_9360001	RAL-304_100b
3119	chr3R	10231774	10231782	chr3R	10237367	10237384	mdg3	6	5597	12.0	18.0	15.0	0.4	5610	chr3R	10231774	intron	CG42795 +	chr3R	10234579	intron	CG42795 +	chr3R	10237384	intron	CG42795 +	chr3R_6_10230001	chr3R_10230001	RAL-304_100b
3120	chr3R	10231783	10231814	chr3R	10237366	10237416	mdg3	33	5597	3.5	17.0	10.2	2.9	5633	chr3R	10231783	intron	CG42795 +	chr3R	10234600	intron	CG42795 +	chr3R	10237416	intron	CG42795 +	chr3R_33_10230001	chr3R_10230001	RAL-304_100b
3121	chr3R	10255359	10255384	chr3R	10260824	10260831	I-element	18	5464	21.0	15.5	18.2	0.9	5472	chr3R	10255359	3` UTR	Sirt6 -	chr3R	10258095	intron	Sirt6 -	chr3R	10260831	exon	Sirt6 -	chr3R_18_10255001	chr3R_10255001	RAL-304_100b
3139	chr3R	10804155	10804203	chr3R	10811706	10811760	17.6	28	7552	6.5	8.0	7.2	3.4	7605	chr3R	10804155	intergenic	CG14692 -	chr3R	10807958	intergenic	not near genes	chr3R	10811760	3` UTR	CG14693 -	chr3R_28_10805001	chr3R_10805001	RAL-304_100b
3147	chr3R	10957840	10957885	chr3R	10963254	10963299	Rt1c	42	5407	17.5	17.0	17.2	2.3	5459	chr3R	10957840	intergenic	not near genes	chr3R	10960570	intergenic	not near genes	chr3R	10963299	intergenic	not near genes	chr3R_42_10960001	chr3R_10960001	RAL-304_100b
3150	chr3R	11065565	11065616	chr3R	11071244	11071287	297	7	5677	4.5	10.5	7.5	0.8	5722	chr3R	11065565	intergenic	not near genes	chr3R	11068426	intergenic	not near genes	chr3R	11071287	intergenic	not near genes	chr3R_7_11065001	chr3R_11065001	RAL-304_100b
3161	chr3R	11379216	11379261	chr3R	11388393	11388419	roo	33	9176	14.0	20.0	17.0	1.8	9203	chr3R	11379216	intron	pros +	chr3R	11383818	intron	pros +	chr3R	11388419	intron	pros +	chr3R_33_11380001	chr3R_11380001	RAL-304_100b
3175	chr3R	11841037	11841092	chr3R	11846253	11846301	BS	54	5212	27.0	21.0	24.0	2.2	5264	chr3R	11841037	intron	CG6959 -	chr3R	11843669	intron	CG6959 -	chr3R	11846301	intron	CG6959 -	chr3R_54_11840001	chr3R_11840001	RAL-304_100b
3182	chr3R	12022859	12022915	chr3R	12025061	12025117	pogo	44	2198	8.0	9.0	8.5	4.6	2258	chr3R	12022859	intergenic	not near genes	chr3R	12023988	intergenic	not near genes	chr3R	12025117	intergenic	not near genes	chr3R_44_12020001	chr3R_12020001	RAL-304_100b
3219	chr3R	12780283	12780303	chr3R	12780420	12780440	BS	19	137	0.5	0.0	0.2	15.8	157	chr3R	12780283	intron	beat-Vc -	chr3R	12780362	intron	beat-Vc -	chr3R	12780440	intron	beat-Vc -	chr3R_19_12780001	chr3R_12780001	RAL-304_100b
3222	chr3R	12864561	12864591	chr3R	12865071	12865101	roo	7	510	2.0	14.5	8.2	0.8	540	chr3R	12864561	intergenic	not near genes	chr3R	12864831	intergenic	not near genes	chr3R	12865101	intergenic	not near genes	chr3R_7_12860001	chr3R_12860001	RAL-304_100b
3225	chr3R	12920126	12920185	chr3R	12925354	12925401	copia	49	5222	10.5	16.0	13.2	3.5	5275	chr3R	12920126	intron	beat-Vb +	chr3R	12922764	intron	beat-Vb +	chr3R	12925401	intron	beat-Vb +	chr3R_49_12920001	chr3R_12920001	RAL-304_100b
3233	chr3R	13135811	13135852	chr3R	13138001	13138042	pogo	27	2187	10.5	15.0	12.8	2.0	2231	chr3R	13135811	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13136926	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13138042	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R_27_13135001	chr3R_13135001	RAL-304_100b
3234	chr3R	13143016	13143020	chr3R	13148617	13148621	mdg3	4	5601	38.5	22.5	30.5	0.1	5605	chr3R	13143016	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13145818	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13148621	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R_4_13145001	chr3R_13145001	RAL-304_100b
3235	chr3R	13143021	13143066	chr3R	13148615	13148667	mdg3	61	5591	14.5	21.5	18.0	3.2	5646	chr3R	13143021	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13145844	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13148667	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R_61_13145001	chr3R_13145001	RAL-304_100b
3240	chr3R	13314072	13314128	chr3R	13318884	13318895	Doc	24	4810	15.0	13.0	14.0	1.6	4823	chr3R	13314072	intergenic	not near genes	chr3R	13316484	intergenic	not near genes	chr3R	13318895	intergenic	CG45080 -	chr3R_24_13315001	chr3R_13315001	RAL-304_100b
3247	chr3R	13517202	13517252	chr3R	13520044	13520094	jockey	14	2842	8.5	0.0	4.2	2.7	2892	chr3R	13517202	intergenic	not near genes	chr3R	13518648	intergenic	not near genes	chr3R	13520094	intergenic	not near genes	chr3R_14_13515001	chr3R_13515001	RAL-304_100b
3278	chr3R	14180786	14180834	chr3R	14185576	14185624	F-element	17	4789	8.0	11.0	9.5	1.6	4838	chr3R	14180786	intron	Dop1R1 -	chr3R	14183205	intron	Dop1R1 -	chr3R	14185624	intron	Dop1R1 -	chr3R_17_14180001	chr3R_14180001	RAL-304_100b
3279	chr3R	14194412	14194458	chr3R	14203580	14203623	roo	42	9172	11.5	11.5	11.5	3.4	9211	chr3R	14194412	intron	Dop1R1 -	chr3R	14199018	intron	Dop1R1 -	chr3R	14203623	intron	Dop1R1 -	chr3R_42_14195001	chr3R_14195001	RAL-304_100b
3280	chr3R	14246371	14246418	chr3R	14247888	14247932	jockey	56	1512	18.5	24.0	21.2	2.5	1561	chr3R	14246371	intergenic	not near genes	chr3R	14247152	intergenic	not near genes	chr3R	14247932	intergenic	not near genes	chr3R_56_14245001	chr3R_14245001	RAL-304_100b
3304	chr3R	15041402	15041418	chr3R	15045186	15045227	Doc	13	3804	0.0	7.0	3.5	2.9	3825	chr3R	15041402	intergenic	not near genes	chr3R	15043314	intergenic	not near genes	chr3R	15045227	intergenic	not near genes	chr3R_13_15040001	chr3R_15040001	RAL-304_100b
3305	chr3R	15059252	15059267	chr3R	15059471	15059478	BS	5	216	14.0	0.0	7.0	0.6	226	chr3R	15059252	intron	dpr9 -	chr3R	15059365	intron	dpr9 -	chr3R	15059478	intron	dpr9 -	chr3R_5_15055001	chr3R_15055001	RAL-304_100b
3306	chr3R	15059301	15059307	chr3R	15059469	15059560	BS	7	240	13.5	0.0	6.8	0.9	259	chr3R	15059301	intron	dpr9 -	chr3R	15059430	intron	dpr9 -	chr3R	15059560	intron	dpr9 -	chr3R_7_15055001	chr3R_15055001	RAL-304_100b
3307	chr3R	15059308	15059478	chr3R	15059467	15059590	BS	23	160	0.0	0.0	0.0	23.0	282	chr3R	15059308	intron	dpr9 -	chr3R	15059449	intron	dpr9 -	chr3R	15059590	intron	dpr9 -	chr3R_23_15055001	chr3R_15055001	RAL-304_100b
3310	chr3R	15102487	15102531	chr3R	15109770	15109810	412	15	7282	5.5	14.0	9.8	1.4	7323	chr3R	15102487	intron	CG42788 -	chr3R	15106148	intron	CG42788 -	chr3R	15109810	intron	CG42788 -	chr3R_15_15105001	chr3R_15105001	RAL-304_100b
3313	chr3R	15132046	15132057	chr3R	15135126	15135142	Juan	11	3084	33.0	26.0	29.5	0.4	3096	chr3R	15132046	intergenic	CG42788 -	chr3R	15133594	intergenic	not near genes	chr3R	15135142	3` UTR	CG6912 -	chr3R_11_15130001	chr3R_15130001	RAL-304_100b
3314	chr3R	15132059	15132076	chr3R	15135119	15135161	Juan	20	3083	24.5	23.5	24.0	0.8	3102	chr3R	15132059	intergenic	CG42788 -	chr3R	15133610	intergenic	not near genes	chr3R	15135161	3` UTR	CG6912 -	chr3R_20_15130001	chr3R_15130001	RAL-304_100b
3318	chr3R	15162527	15162533	chr3R	15167319	15167320	F-element	4	4791	25.5	19.0	22.2	0.2	4793	chr3R	15162527	intron	Gyc88E +	chr3R	15164924	intron	Gyc88E +	chr3R	15167320	intron	Gyc88E +	chr3R_4_15160001	chr3R_15160001	RAL-304_100b
3319	chr3R	15162534	15162573	chr3R	15167316	15167364	F-element	20	4789	9.5	18.0	13.8	1.4	4830	chr3R	15162534	intron	Gyc88E +	chr3R	15164949	intron	Gyc88E +	chr3R	15167364	intron	Gyc88E +	chr3R_20_15160001	chr3R_15160001	RAL-304_100b
3333	chr3R	15601145	15601173	chr3R	15608692	15608716	412	21	7546	32.0	16.5	24.2	0.8	7571	chr3R	15601145	intergenic	not near genes	chr3R	15604930	intergenic	not near genes	chr3R	15608716	intergenic	not near genes	chr3R_21_15600001	chr3R_15600001	RAL-304_100b
3334	chr3R	15601175	15601195	chr3R	15608687	15608742	412	20	7541	17.0	15.0	16.0	1.2	7567	chr3R	15601175	intergenic	not near genes	chr3R	15604958	intergenic	not near genes	chr3R	15608742	intergenic	not near genes	chr3R_20_15600001	chr3R_15600001	RAL-304_100b
3335	chr3R	15618726	15618763	chr3R	15626225	15626262	blood	12	7494	4.5	16.5	10.5	1.0	7536	chr3R	15618726	intergenic	not near genes	chr3R	15622494	intergenic	not near genes	chr3R	15626262	intergenic	not near genes	chr3R_12_15620001	chr3R_15620001	RAL-304_100b
3341	chr3R	15735218	15735233	chr3R	15739963	15739978	F-element	6	4745	10.0	10.0	10.0	0.5	4760	chr3R	15735218	intergenic	not near genes	chr3R	15737598	intergenic	not near genes	chr3R	15739978	intergenic	not near genes	chr3R_6_15735001	chr3R_15735001	RAL-304_100b
3374	chr3R	16756293	16756354	chr3R	16762509	16762537	diver	53	6212	13.5	9.0	11.2	4.3	6244	chr3R	16756293	intron	bxd -	chr3R	16759415	intron	bxd -	chr3R	16762537	intron	bxd -	chr3R_53_16755001	chr3R_16755001	RAL-304_100b
3386	chr3R	17294646	17294701	chr3R	17295099	17295118	BS	43	449	16.0	19.5	17.8	2.3	472	chr3R	17294646	intergenic	not near genes	chr3R	17294882	intergenic	not near genes	chr3R	17295118	intergenic	not near genes	chr3R_43_17290001	chr3R_17290001	RAL-304_100b
3388	chr3R	17346667	17346713	chr3R	17348255	17348297	F-element	27	1584	13.0	14.5	13.8	1.8	1630	chr3R	17346667	intron	beat-IIa -	chr3R	17347482	intron	beat-IIa -	chr3R	17348297	intron	beat-IIa -	chr3R_27_17345001	chr3R_17345001	RAL-304_100b
3396	chr3R	17509231	17509250	chr3R	17516804	17516816	412	9	7571	22.0	45.5	33.8	0.3	7585	chr3R	17509231	intergenic	not near genes	chr3R	17513024	intergenic	not near genes	chr3R	17516816	intergenic	not near genes	chr3R_9_17510001	chr3R_17510001	RAL-304_100b
3400	chr3R	17575306	17575309	chr3R	17582797	17582800	blood	4	7491	72.0	19.0	45.5	0.1	7494	chr3R	17575306	intergenic	not near genes	chr3R	17579053	intergenic	not near genes	chr3R	17582800	intergenic	not near genes	chr3R_4_17575001	chr3R_17575001	RAL-304_100b
3402	chr3R	17591263	17591268	chr3R	17591724	17591729	F-element	6	460	45.5	18.5	32.0	0.2	466	chr3R	17591263	intergenic	not near genes	chr3R	17591496	intergenic	not near genes	chr3R	17591729	intergenic	not near genes	chr3R_6_17590001	chr3R_17590001	RAL-304_100b
3403	chr3R	17591269	17591282	chr3R	17591721	17591743	F-element	10	455	37.0	17.0	27.0	0.4	474	chr3R	17591269	intergenic	not near genes	chr3R	17591506	intergenic	not near genes	chr3R	17591743	intergenic	not near genes	chr3R_10_17590001	chr3R_17590001	RAL-304_100b
3404	chr3R	17591284	17591296	chr3R	17591720	17591757	F-element	13	450	30.0	16.5	23.2	0.5	473	chr3R	17591284	intergenic	not near genes	chr3R	17591520	intergenic	not near genes	chr3R	17591757	intergenic	not near genes	chr3R_13_17590001	chr3R_17590001	RAL-304_100b
3405	chr3R	17591297	17591322	chr3R	17591718	17591768	F-element	13	447	13.0	15.5	14.2	0.9	471	chr3R	17591297	intergenic	not near genes	chr3R	17591532	intergenic	not near genes	chr3R	17591768	intergenic	not near genes	chr3R_13_17590001	chr3R_17590001	RAL-304_100b
3407	chr3R	17638326	17638339	chr3R	17638837	17638850	roo	11	511	0.0	11.5	5.8	1.6	524	chr3R	17638326	intron	CG43175 +	chr3R	17638588	intron	CG43175 +	chr3R	17638850	intron,intron	CG43175 +,CR45222 +	chr3R_11_17635001	chr3R_17635001	RAL-304_100b
3417	chr3R	17925831	17925856	chr3R	17927318	17927343	hobo	25	1491	35.5	22.5	29.0	0.8	1512	chr3R	17925831	intron	cpo +	chr3R	17926587	intron	cpo +	chr3R	17927343	intron	cpo +	chr3R_25_17925001	chr3R_17925001	RAL-304_100b
3418	chr3R	17925857	17925876	chr3R	17927317	17927342	hobo	24	1481	30.5	22.0	26.2	0.9	1485	chr3R	17925857	intron	cpo +	chr3R	17926600	intron	cpo +	chr3R	17927342	intron	cpo +	chr3R_24_17925001	chr3R_17925001	RAL-304_100b
3423	chr3R	18032754	18032807	chr3R	18040454	18040507	opus	10	7700	1.0	12.0	6.5	1.3	7753	chr3R	18032754	intergenic	not near genes	chr3R	18036630	intergenic	not near genes	chr3R	18040507	intergenic	not near genes	chr3R_10_18035001	chr3R_18035001	RAL-304_100b
3451	chr3R	18606501	18606516	chr3R	18610748	18610763	F-element	13	4247	10.0	5.0	7.5	1.5	4262	chr3R	18606501	intron,intron	qin +,CG14304 -	chr3R	18608632	intron,intron	qin +,CG14304 -	chr3R	18610763	intron,intron	qin +,CG14304 -	chr3R_13_18605001	chr3R_18605001	RAL-304_100b
3452	chr3R	18606517	18606532	chr3R	18610746	18610779	F-element	11	4243	8.5	5.0	6.8	1.4	4262	chr3R	18606517	intron,intron	qin +,CG14304 -	chr3R	18608648	intron,intron	qin +,CG14304 -	chr3R	18610779	intron,intron	qin +,CG14304 -	chr3R_11_18605001	chr3R_18605001	RAL-304_100b
3480	chr3R	19193002	19193014	chr3R	19197289	19197331	F-element	12	4318	5.5	19.5	12.5	0.9	4329	chr3R	19193002	intron	CG31475 +	chr3R	19195166	intron	CG31475 +	chr3R	19197331	intron	CG31475 +	chr3R_12_19195001	chr3R_19195001	RAL-304_100b
3517	chr3R	20109514	20109564	chr3R	20114743	20114795	copia	18	5228	9.5	10.5	10.0	1.6	5281	chr3R	20109514	intergenic	not near genes	chr3R	20112154	intergenic	not near genes	chr3R	20114795	intergenic	CG10887 +	chr3R_18_20110001	chr3R_20110001	RAL-304_100b
3518	chr3R	20156672	20156680	chr3R	20165867	20165875	roo	13	9194	37.0	18.0	27.5	0.5	9203	chr3R	20156672	intergenic	not near genes	chr3R	20161274	intergenic	not near genes	chr3R	20165875	intergenic	not near genes	chr3R_13_20160001	chr3R_20160001	RAL-304_100b
3519	chr3R	20156684	20156721	chr3R	20165863	20165900	roo	31	9189	19.0	15.5	17.2	1.7	9216	chr3R	20156684	intergenic	not near genes	chr3R	20161292	intergenic	not near genes	chr3R	20165900	intergenic	not near genes	chr3R_31_20160001	chr3R_20160001	RAL-304_100b
3523	chr3R	20245264	20245305	chr3R	20248899	20248940	F-element	11	3634	7.0	11.5	9.2	1.1	3676	chr3R	20245264	3` UTR	Nlg4 +	chr3R	20247102	intergenic	not near genes	chr3R	20248940	intergenic	not near genes	chr3R_11_20245001	chr3R_20245001	RAL-304_100b
3524	chr3R	20266507	20266544	chr3R	20272988	20273035	Burdock	38	6493	3.0	12.5	7.8	4.3	6528	chr3R	20266507	intron	cic +	chr3R	20269771	intron	cic +	chr3R	20273035	intron	cic +	chr3R_38_20265001	chr3R_20265001	RAL-304_100b
3527	chr3R	20330976	20331028	chr3R	20331487	20331539	roo	23	511	9.0	7.5	8.2	2.5	563	chr3R	20330976	intergenic	Sirt2 +	chr3R	20331258	intergenic	Sirt2 +	chr3R	20331539	intergenic	not near genes	chr3R_23_20330001	chr3R_20330001	RAL-304_100b
3532	chr3R	20512980	20513033	chr3R	20515708	20515760	opus	17	2727	7.5	4.5	6.0	2.4	2780	chr3R	20512980	intergenic	not near genes	chr3R	20514370	intergenic	not near genes	chr3R	20515760	intergenic	not near genes	chr3R_17_20510001	chr3R_20510001	RAL-304_100b
3533	chr3R	4475345	4475349	chr3R	20516623	20516646	micropia	5	16041283	60.0	38.0	49.0	0.1	16041301	chr3R	4475345	intron	CG31523 -	chr3R	12495996	intergenic	not near genes	chr3R	20516646	intergenic	not near genes	chr3R_5_12495001	chr3R_12495001	RAL-304_100b
3543	chr3R	20854473	20854490	chr3R	20859282	20859304	Doc	8	4810	33.0	20.5	26.8	0.3	4831	chr3R	20854473	intron	Ir93a -	chr3R	20856888	intron	Ir93a -	chr3R	20859304	exon	Ir93a -	chr3R_8_20855001	chr3R_20855001	RAL-304_100b
3544	chr3R	20854500	20854520	chr3R	20859269	20859278	Doc	13	4791	18.0	14.5	16.2	0.8	4778	chr3R	20854500	intron	Ir93a -	chr3R	20856889	intron	Ir93a -	chr3R	20859278	exon	Ir93a -	chr3R_13_20855001	chr3R_20855001	RAL-304_100b
3557	chr3R	21141651	21141705	chr3R	21150157	21150210	Tirant	30	8499	15.0	16.0	15.5	1.8	8559	chr3R	21141651	intron	SNF4Agamma +	chr3R	21145930	intron	SNF4Agamma +	chr3R	21150210	intron	SNF4Agamma +	chr3R_30_21145001	chr3R_21145001	RAL-304_100b
3578	chr3R	21761099	21761116	chr3R	21768516	21768532	mdg1	18	7415	39.0	22.0	30.5	0.6	7433	chr3R	21761099	exon	CG42335 +	chr3R	21764816	intron	CG42335 +	chr3R	21768532	exon	CG42335 +	chr3R_18_21760001	chr3R_21760001	RAL-304_100b
3579	chr3R	21761118	21761131	chr3R	21768512	21768548	mdg1	15	7408	33.5	19.5	26.5	0.5	7430	chr3R	21761118	exon	CG42335 +	chr3R	21764833	intron	CG42335 +	chr3R	21768548	exon	CG42335 +	chr3R_15_21760001	chr3R_21760001	RAL-304_100b
3580	chr3R	21761132	21761154	chr3R	21768509	21768566	mdg1	27	7405	21.0	17.0	19.0	1.4	7434	chr3R	21761132	exon	CG42335 +	chr3R	21764849	intron	CG42335 +	chr3R	21768566	exon	CG42335 +	chr3R_27_21760001	chr3R_21760001	RAL-304_100b
3614	chr3R	22234663	22234714	chr3R	22236007	22236058	pogo	18	1333	7.5	11.0	9.2	1.8	1395	chr3R	22234663	intron	SKIP +	chr3R	22235360	intron	SKIP +	chr3R	22236058	intron	SKIP +	chr3R_18_22235001	chr3R_22235001	RAL-304_100b
3615	chr3R	22239470	22239525	chr3R	22248555	22248598	roo	28	9075	14.5	1.5	8.0	3.1	9128	chr3R	22239470	intron	SKIP +	chr3R	22244034	intron	SKIP +	chr3R	22248598	intron	SKIP +	chr3R_28_22240001	chr3R_22240001	RAL-304_100b
3621	chr3R	22450521	22450574	chr3R	22453185	22453239	NOF	41	2660	20.5	19.5	20.0	2.0	2718	chr3R	22450521	intron	CG34376 +	chr3R	22451880	intron	CG34376 +	chr3R	22453239	intron	CG34376 +	chr3R_41_22450001	chr3R_22450001	RAL-304_100b
3635	chr3R	22881183	22881188	chr3R	22884914	22884919	Doc	4	3731	14.0	8.0	11.0	0.3	3736	chr3R	22881183	intergenic	not near genes	chr3R	22883051	intergenic	not near genes	chr3R	22884919	intergenic	not near genes	chr3R_4_22880001	chr3R_22880001	RAL-304_100b
3662	chr3R	23558374	23558388	chr3R	23560180	23560194	Bari1	9	1805	23.0	4.5	13.8	0.6	1820	chr3R	23558374	intron	beat-IV +	chr3R	23559284	intron	beat-IV +	chr3R	23560194	intron	beat-IV +	chr3R_9_23555001	chr3R_23555001	RAL-304_100b
3663	chr3R	23558389	23558427	chr3R	23560179	23560233	Bari1	21	1802	8.5	4.5	6.5	2.8	1844	chr3R	23558389	intron	beat-IV +	chr3R	23559311	intron	beat-IV +	chr3R	23560233	intron	beat-IV +	chr3R_21_23555001	chr3R_23555001	RAL-304_100b
3669	chr3R	23684675	23684726	chr3R	23685181	23685221	roo	53	505	20.0	28.0	24.0	2.1	546	chr3R	23684675	exon	CG18754 +	chr3R	23684948	intron	CG18754 +	chr3R	23685221	exon	CG18754 +	chr3R_53_23680001	chr3R_23680001	RAL-304_100b
3672	chr3R	23835383	23835388	chr3R	23844558	23844563	roo	4	9174	32.5	0.5	16.5	0.2	9180	chr3R	23835383	intron	CG34355 +	chr3R	23839973	intron	CG34355 +	chr3R	23844563	intron	CG34355 +	chr3R_4_23835001	chr3R_23835001	RAL-304_100b
3673	chr3R	23835394	23835399	chr3R	23844554	23844574	roo	5	9172	27.5	0.5	14.0	0.3	9180	chr3R	23835394	intron	CG34355 +	chr3R	23839984	intron	CG34355 +	chr3R	23844574	intron	CG34355 +	chr3R_5_23835001	chr3R_23835001	RAL-304_100b
3674	chr3R	23851062	23851089	chr3R	23858754	23858771	opus	11	7691	7.0	19.0	13.0	0.8	7709	chr3R	23851062	3` UTR	CG34355 +	chr3R	23854916	intergenic	not near genes	chr3R	23858771	intergenic	not near genes	chr3R_11_23850001	chr3R_23850001	RAL-304_100b
3684	chr3R	24072062	24072080	chr3R	24072525	24072528	jockey	14	460	38.5	0.0	19.2	0.7	466	chr3R	24072062	intron	4EHP -	chr3R	24072295	intron	4EHP -	chr3R	24072528	intron	4EHP -	chr3R_14_24070001	chr3R_24070001	RAL-304_100b
3685	chr3R	24072081	24072123	chr3R	24072524	24072576	jockey	16	449	13.5	0.0	6.8	2.1	495	chr3R	24072081	intron	4EHP -	chr3R	24072328	intron	4EHP -	chr3R	24072576	intron	4EHP -	chr3R_16_24070001	chr3R_24070001	RAL-304_100b
3686	chr3R	24076895	24076907	chr3R	24078387	24078399	hobo	10	1490	38.0	23.0	30.5	0.3	1504	chr3R	24076895	intron	4EHP -	chr3R	24077647	intron	4EHP -	chr3R	24078399	intron	4EHP -	chr3R_10_24075001	chr3R_24075001	RAL-304_100b
3687	chr3R	24076909	24076915	chr3R	24078386	24078405	hobo	6	1483	36.5	22.5	29.5	0.2	1496	chr3R	24076909	intron	4EHP -	chr3R	24077657	intron	4EHP -	chr3R	24078405	intron	4EHP -	chr3R_6_24075001	chr3R_24075001	RAL-304_100b
3688	chr3R	24076917	24076948	chr3R	24078384	24078394	hobo	34	1484	17.0	22.0	19.5	1.7	1477	chr3R	24076917	intron	4EHP -	chr3R	24077656	intron	4EHP -	chr3R	24078394	intron	4EHP -	chr3R_34_24075001	chr3R_24075001	RAL-304_100b
3693	chr3R	24207195	24207207	chr3R	24212296	24212308	flea	12	5101	50.0	24.0	37.0	0.3	5113	chr3R	24207195	intron	twin -	chr3R	24209752	intron	twin -	chr3R	24212308	intron	twin -	chr3R_12_24205001	chr3R_24205001	RAL-304_100b
3694	chr3R	24207208	24207244	chr3R	24212293	24212312	flea	45	5095	25.0	23.5	24.2	1.8	5104	chr3R	24207208	intron	twin -	chr3R	24209760	intron	twin -	chr3R	24212312	intron	twin -	chr3R_45_24205001	chr3R_24205001	RAL-304_100b
3701	chr3R	24493255	24493300	chr3R	24493509	24493554	BS	35	253	11.5	17.5	14.5	2.3	299	chr3R	24493255	intergenic	not near genes	chr3R	24493404	intergenic	not near genes	chr3R	24493554	intergenic	not near genes	chr3R_35_24490001	chr3R_24490001	RAL-304_100b
3704	chr3R	24594652	24594667	chr3R	24594917	24594932	pogo	10	265	16.5	28.5	22.5	0.4	280	chr3R	24594652	intron	mld +	chr3R	24594792	intron	mld +	chr3R	24594932	intron	mld +	chr3R_10_24590001	chr3R_24590001	RAL-304_100b
3709	chr3R	24730066	24730098	chr3R	24732469	24732501	Doc	25	2401	31.0	2.5	16.8	1.4	2435	chr3R	24730066	intron	tok +	chr3R	24731284	intron	tok +	chr3R	24732501	intron	tok +	chr3R_25_24730001	chr3R_24730001	RAL-304_100b
3710	chr3R	24730100	24730117	chr3R	24732468	24732500	Doc	7	2377	18.5	2.5	10.5	0.6	2400	chr3R	24730100	intron	tok +	chr3R	24731300	intron	tok +	chr3R	24732500	intron	tok +	chr3R_7_24730001	chr3R_24730001	RAL-304_100b
3716	chr3R	24927108	24927115	chr3R	24931924	24931931	Doc	5	4816	32.5	18.5	25.5	0.2	4823	chr3R	24927108	intergenic	Trf4-2 +	chr3R	24929520	intergenic	not near genes	chr3R	24931931	intergenic	CG11771 +	chr3R_5_24925001	chr3R_24925001	RAL-304_100b
3717	chr3R	24927121	24927153	chr3R	24931920	24931936	Doc	22	4809	19.5	18.0	18.8	1.1	4815	chr3R	24927121	intergenic	Trf4-2 +	chr3R	24929528	intergenic	not near genes	chr3R	24931936	intergenic	CG11771 +	chr3R_22_24925001	chr3R_24925001	RAL-304_100b
3730	chr3R	25324366	25324389	chr3R	25328956	25328979	Doc	19	4589	11.5	32.0	21.8	0.8	4613	chr3R	25324366	exon	CHKov1 -	chr3R	25326672	intron	CHKov1 -	chr3R	25328979	exon	CHKov1 -	chr3R_19_25325001	chr3R_25325001	RAL-304_100b
3737	chr3R	25725808	25725856	chr3R	25734993	25735041	roo	21	9183	7.0	12.5	9.8	1.9	9233	chr3R	25725808	intron	LpR2 -	chr3R	25730424	intron	LpR2 -	chr3R	25735041	intron	LpR2 -	chr3R_21_25730001	chr3R_25730001	RAL-304_100b
3742	chr3R	25832672	25832684	chr3R	25841879	25841885	roo	14	9206	31.5	26.5	29.0	0.5	9213	chr3R	25832672	exon	alpha4GT2 +	chr3R	25837278	intron	alpha4GT2 +	chr3R	25841885	exon	alpha4GT2 +	chr3R_14_25835001	chr3R_25835001	RAL-304_100b
3743	chr3R	25832686	25832723	chr3R	25841877	25841890	roo	62	9201	13.5	25.5	19.5	3.0	9204	chr3R	25832686	exon	alpha4GT2 +	chr3R	25837288	intron	alpha4GT2 +	chr3R	25841890	exon	alpha4GT2 +	chr3R_62_25835001	chr3R_25835001	RAL-304_100b
3744	chr3R	26108799	26108842	chr3R	26117407	26117415	Tirant	24	8602	27.0	2.5	14.8	1.5	8616	chr3R	26108799	5` UTR	CG31324 +	chr3R	26113107	intron	CG31324 +	chr3R	26117415	intron	CG31324 +	chr3R_24_26110001	chr3R_26110001	RAL-304_100b
3758	chr3R	26376301	26376338	chr3R	26385486	26385516	roo	33	9182	19.0	10.5	14.8	2.1	9215	chr3R	26376301	intergenic	not near genes	chr3R	26380908	intergenic	not near genes	chr3R	26385516	intergenic	not near genes	chr3R_33_26380001	chr3R_26380001	RAL-304_100b
3759	chr3R	26376339	26376357	chr3R	26385483	26385532	roo	15	9175	11.0	9.0	10.0	1.4	9193	chr3R	26376339	intergenic	not near genes	chr3R	26380936	intergenic	not near genes	chr3R	26385532	intergenic	not near genes	chr3R_15_26380001	chr3R_26380001	RAL-304_100b
3763	chr3R	26510496	26510535	chr3R	26519576	26519615	roo	29	9078	8.0	14.0	11.0	2.4	9119	chr3R	26510496	intron	plum -	chr3R	26515056	intron	plum -	chr3R	26519615	intron,5` UTR	plum -,CR45226 +	chr3R_29_26515001	chr3R_26515001	RAL-304_100b
3764	chr3R	26558300	26558359	chr3R	26565638	26565671	Stalker4	45	7329	10.0	12.0	11.0	3.8	7371	chr3R	26558300	intron	scrib +	chr3R	26561986	intron	scrib +	chr3R	26565671	intron	scrib +	chr3R_45_26560001	chr3R_26560001	RAL-304_100b
3766	chr3R	26642707	26642757	chr3R	26643125	26643149	jockey	17	416	16.0	0.0	8.0	1.9	442	chr3R	26642707	intergenic	not near genes	chr3R	26642928	intergenic	not near genes	chr3R	26643149	intergenic	not near genes	chr3R_17_26640001	chr3R_26640001	RAL-304_100b
3774	chr3R	26810526	26810586	chr3R	26811036	26811096	roo	38	509	13.5	11.5	12.5	2.8	570	chr3R	26810526	intron	Tl +	chr3R	26810811	intron	Tl +	chr3R	26811096	intron	Tl +	chr3R_38_26810001	chr3R_26810001	RAL-304_100b
3779	chr3R	27007381	27007429	chr3R	27016541	27016572	roo	27	9153	13.5	8.0	10.8	2.3	9191	chr3R	27007381	intron	RYa-R +	chr3R	27011976	intron	RYa-R +	chr3R	27016572	intron	RYa-R +	chr3R_27_27010001	chr3R_27010001	RAL-304_100b
3785	chr3R	27140489	27140546	chr3R	27148123	27148166	412	36	7630	17.0	10.5	13.8	2.4	7677	chr3R	27140489	intron	CG6051 -	chr3R	27144328	intron	CG6051 -	chr3R	27148166	intron	CG6051 -	chr3R_36_27140001	chr3R_27140001	RAL-304_100b
3793	chr3R	27342769	27342786	chr3R	27351375	27351392	Tirant	7	8606	33.0	10.5	21.8	0.3	8623	chr3R	27342769	intron	CG42534 +	chr3R	27347080	intron	CG42534 +	chr3R	27351392	intron	CG42534 +	chr3R_7_27345001	chr3R_27345001	RAL-304_100b
3794	chr3R	27342787	27342825	chr3R	27351373	27351431	Tirant	32	8602	14.0	10.0	12.0	2.5	8644	chr3R	27342787	intron	CG42534 +	chr3R	27347109	intron	CG42534 +	chr3R	27351431	intron	CG42534 +	chr3R_32_27345001	chr3R_27345001	RAL-304_100b
3802	chr3R	27521140	27521183	chr3R	27530374	27530417	roo	20	9232	13.0	15.5	14.2	1.3	9277	chr3R	27521140	intron	CG12885 +	chr3R	27525778	intron	CG12885 +	chr3R	27530417	intron	CG12885 +	chr3R_20_27525001	chr3R_27525001	RAL-304_100b
3811	chr3R	27725546	27725599	chr3R	27731011	27731053	I-element	18	5466	15.5	0.0	7.8	2.0	5507	chr3R	27725546	intergenic	not near genes	chr3R	27728300	intergenic	not near genes	chr3R	27731053	intergenic	not near genes	chr3R_18_27725001	chr3R_27725001	RAL-304_100b
3813	chr3R	27791641	27791648	chr3R	27794792	27794813	Rt1c	5	3157	34.0	30.0	32.0	0.2	3172	chr3R	27791641	intron	CG34353 -	chr3R	27793227	intron	CG34353 -	chr3R	27794813	intron	CG34353 -	chr3R_5_27790001	chr3R_27790001	RAL-304_100b
3816	chr3R	27856738	27856788	chr3R	27858240	27858296	hopper2	45	1503	14.5	13.5	14.0	3.0	1558	chr3R	27856738	intron	CG34353 -	chr3R	27857517	intron	CG34353 -	chr3R	27858296	intron	CG34353 -	chr3R_45_27855001	chr3R_27855001	RAL-304_100b
3817	chr3R	27862927	27862944	chr3R	27868258	27868263	Transpac	5	5328	0.5	11.0	5.8	0.7	5336	chr3R	27862927	intron	CG34353 -	chr3R	27865595	intron	CG34353 -	chr3R	27868263	intron	CG34353 -	chr3R_5_27865001	chr3R_27865001	RAL-304_100b
3818	chr3R	27862957	27862984	chr3R	27868288	27868314	Transpac	4	5328	0.5	29.5	15.0	0.2	5357	chr3R	27862957	intron	CG34353 -	chr3R	27865636	intron	CG34353 -	chr3R	27868314	intron	CG34353 -	chr3R_4_27865001	chr3R_27865001	RAL-304_100b
3819	chr3R	27875674	27875729	chr3R	27882754	27882809	297	32	7078	12.0	14.5	13.2	2.3	7135	chr3R	27875674	intron	CG34353 -	chr3R	27879242	intron	CG34353 -	chr3R	27882809	intron	CG34353 -	chr3R_32_27875001	chr3R_27875001	RAL-304_100b
3822	chr3R	28068476	28068525	chr3R	28073943	28073992	I-element	30	5464	0.5	16.5	8.5	3.2	5516	chr3R	28068476	intron	CG34362 +	chr3R	28071234	intron	CG34362 +	chr3R	28073992	intron	CG34362 +	chr3R_30_28070001	chr3R_28070001	RAL-304_100b
3826	chr3R	28173647	28173700	chr3R	28181102	28181155	mdg1	48	7454	13.0	15.5	14.2	3.2	7508	chr3R	28173647	intron	CG34354 +	chr3R	28177401	intron	CG34354 +	chr3R	28181155	intron	CG34354 +	chr3R_48_28175001	chr3R_28175001	RAL-304_100b
3829	chr3R	28253316	28253335	chr3R	28255851	28255860	jockey	11	2532	31.0	19.0	25.0	0.4	2544	chr3R	28253316	intergenic	not near genes	chr3R	28254588	intergenic	not near genes	chr3R	28255860	intergenic	not near genes	chr3R_11_28250001	chr3R_28250001	RAL-304_100b
3830	chr3R	28253337	28253368	chr3R	28255842	28255903	jockey	44	2531	22.5	16.5	19.5	2.1	2566	chr3R	28253337	intergenic	not near genes	chr3R	28254620	intergenic	not near genes	chr3R	28255903	intergenic	not near genes	chr3R_44_28250001	chr3R_28250001	RAL-304_100b
3832	chr3R	28302082	28302135	chr3R	28302545	28302564	jockey	39	458	12.5	17.0	14.8	2.5	482	chr3R	28302082	intergenic	not near genes	chr3R	28302323	intergenic	not near genes	chr3R	28302564	intergenic	not near genes	chr3R_39_28300001	chr3R_28300001	RAL-304_100b
3842	chr3R	28758261	28758273	chr3R	28763903	28763915	roo	6	5642	27.5	0.0	13.8	0.4	5654	chr3R	28758261	intergenic	aqrs -	chr3R	28761088	intergenic	not near genes	chr3R	28763915	intergenic	not near genes	chr3R_6_28760001	chr3R_28760001	RAL-304_100b
3843	chr3R	28758275	28758278	chr3R	28763901	28763920	roo	7	5639	25.5	0.0	12.8	0.5	5645	chr3R	28758275	intergenic	aqrs -	chr3R	28761098	intergenic	not near genes	chr3R	28763920	intergenic	not near genes	chr3R_7_28760001	chr3R_28760001	RAL-304_100b
3844	chr3R	28758300	28758312	chr3R	28771331	28771344	Stalker4	7	13032	11.0	5.0	8.0	0.8	13044	chr3R	28758300	intergenic	aqrs -	chr3R	28764822	intergenic	not near genes	chr3R	28771344	intergenic	not near genes	chr3R_7_28760001	chr3R_28760001	RAL-304_100b
3845	chr3R	28758315	28758319	chr3R	28771347	28771351	Stalker4	6	13032	9.0	7.5	8.2	0.7	13036	chr3R	28758315	intergenic	aqrs -	chr3R	28764833	intergenic	not near genes	chr3R	28771351	intergenic	not near genes	chr3R_6_28760001	chr3R_28760001	RAL-304_100b
3846	chr3R	28792848	28792854	chr3R	28797968	28797974	jockey	5	5120	47.0	21.5	34.2	0.1	5126	chr3R	28792848	intergenic	not near genes	chr3R	28795411	intergenic	not near genes	chr3R	28797974	intergenic	not near genes	chr3R_5_28795001	chr3R_28795001	RAL-304_100b
3847	chr3R	28792857	28792865	chr3R	28797966	28797985	jockey	8	5116	42.0	20.0	31.0	0.2	5128	chr3R	28792857	intergenic	not near genes	chr3R	28795421	intergenic	not near genes	chr3R	28797985	intergenic	not near genes	chr3R_8_28795001	chr3R_28795001	RAL-304_100b
3848	chr3R	28792867	28792898	chr3R	28797964	28798018	jockey	41	5111	25.0	18.5	21.8	1.8	5151	chr3R	28792867	intergenic	not near genes	chr3R	28795442	intergenic	not near genes	chr3R	28798018	intergenic	not near genes	chr3R_41_28795001	chr3R_28795001	RAL-304_100b
3849	chr3R	28792899	28792902	chr3R	28797962	28797992	jockey	5	5103	23.5	17.0	20.2	0.2	5093	chr3R	28792899	intergenic	not near genes	chr3R	28795446	intergenic	not near genes	chr3R	28797992	intergenic	not near genes	chr3R_5_28795001	chr3R_28795001	RAL-304_100b
3865	chr3R	29079354	29079373	chr3R	29080751	29080770	NOF	18	1396	34.0	16.5	25.2	0.7	1416	chr3R	29079354	intron	CG11873 +	chr3R	29080062	intron	CG11873 +	chr3R	29080770	intron	CG11873 +	chr3R_18_29080001	chr3R_29080001	RAL-304_100b
3866	chr3R	29079374	29079412	chr3R	29080750	29080796	NOF	24	1393	12.5	16.5	14.5	1.5	1422	chr3R	29079374	intron	CG11873 +	chr3R	29080085	intron	CG11873 +	chr3R	29080796	intron	CG11873 +	chr3R_24_29080001	chr3R_29080001	RAL-304_100b
3879	chr3R	29319803	29319840	chr3R	29320147	29320184	jockey	15	343	13.0	12.0	12.5	1.1	381	chr3R	29319803	intergenic	Cnx99A -	chr3R	29319994	intergenic	Cnx99A -	chr3R	29320184	intergenic	not near genes	chr3R_15_29315001	chr3R_29315001	RAL-304_100b
3880	chr3R	29319841	29319857	chr3R	29320144	29320170	jockey	11	336	6.0	11.5	8.8	1.1	329	chr3R	29319841	intergenic	Cnx99A -	chr3R	29320006	intergenic	Cnx99A -	chr3R	29320170	intergenic	not near genes	chr3R_11_29320001	chr3R_29320001	RAL-304_100b
3882	chr3R	29406611	29406614	chr3R	29407916	29407925	jockey	6	1310	45.0	25.5	35.2	0.2	1314	chr3R	29406611	intron	Ptp99A +	chr3R	29407268	intron	Ptp99A +	chr3R	29407925	intron	Ptp99A +	chr3R_6_29405001	chr3R_29405001	RAL-304_100b
3883	chr3R	29406615	29406643	chr3R	29407910	29407942	jockey	25	1308	22.5	23.0	22.8	1.1	1327	chr3R	29406615	intron	Ptp99A +	chr3R	29407278	intron	Ptp99A +	chr3R	29407942	intron	Ptp99A +	chr3R_25_29405001	chr3R_29405001	RAL-304_100b
3905	chr3R	29738245	29738256	chr3R	29739732	29739748	hobo	14	1492	21.5	12.0	16.8	0.8	1503	chr3R	29738245	intergenic	CG1969 +,CG7598 +	chr3R	29738996	intron	CG1969 +	chr3R	29739748	5` UTR	CG1969 +	chr3R_14_29735001	chr3R_29735001	RAL-304_100b
3906	chr3R	29738258	29738260	chr3R	29739750	29739752	hobo	4	1492	21.5	18.0	19.8	0.2	1494	chr3R	29738258	intergenic	CG1969 +,CG7598 +	chr3R	29739005	intron	CG1969 +	chr3R	29739752	5` UTR	CG1969 +	chr3R_4_29735001	chr3R_29735001	RAL-304_100b
3907	chr3R	29738262	29738295	chr3R	29739729	29739787	hobo	42	1487	15.0	10.5	12.8	3.0	1525	chr3R	29738262	intergenic	CG1969 +,CG7598 +	chr3R	29739024	intron	CG1969 +	chr3R	29739787	5` UTR	CG1969 +	chr3R_42_29735001	chr3R_29735001	RAL-304_100b
3911	chr3R	29760341	29760390	chr3R	29761567	29761616	pogo	19	1222	13.0	8.0	10.5	1.7	1275	chr3R	29760341	intergenic	not near genes	chr3R	29760978	intergenic	not near genes	chr3R	29761616	intergenic	not near genes	chr3R_19_29760001	chr3R_29760001	RAL-304_100b
3917	chr3R	29881997	29882050	chr3R	29891179	29891232	roo	49	9180	10.0	12.5	11.2	4.0	9235	chr3R	29881997	intron	CG31038 +	chr3R	29886614	intron	CG31038 +	chr3R	29891232	intron	CG31038 +	chr3R_49_29885001	chr3R_29885001	RAL-304_100b
3925	chr3R	30084825	30084840	chr3R	30086317	30086331	hobo	10	1491	40.0	16.0	28.0	0.3	1506	chr3R	30084825	intron	sima +	chr3R	30085578	intron	sima +	chr3R	30086331	intron	sima +	chr3R_10_30085001	chr3R_30085001	RAL-304_100b
3926	chr3R	30084842	30084883	chr3R	30086315	30086359	hobo	35	1488	12.5	16.0	14.2	2.3	1517	chr3R	30084842	intron	sima +	chr3R	30085600	intron	sima +	chr3R	30086359	intron	sima +	chr3R_35_30085001	chr3R_30085001	RAL-304_100b
3935	chr3R	30238736	30238797	chr3R	30239925	30239982	1360	41	1184	12.5	9.0	10.8	3.5	1246	chr3R	30238736	intergenic	not near genes	chr3R	30239359	intergenic	not near genes	chr3R	30239982	intergenic	not near genes	chr3R_41_30235001	chr3R_30235001	RAL-304_100b
3943	chr3R	30317325	30317359	chr3R	30324919	30324976	roo	16	7614	6.5	8.0	7.2	2.0	7651	chr3R	30317325	intron	hdc +	chr3R	30321150	intron	hdc +	chr3R	30324976	intron	hdc +	chr3R_16_30320001	chr3R_30320001	RAL-304_100b
3945	chr3R	30375516	30375566	chr3R	30383166	30383216	412	36	7648	13.0	15.0	14.0	2.4	7700	chr3R	30375516	intergenic	not near genes	chr3R	30379366	intergenic	not near genes	chr3R	30383216	intergenic	not near genes	chr3R_36_30375001	chr3R_30375001	RAL-304_100b
3946	chr3R	30396194	30396242	chr3R	30404485	30404533	roo	39	8288	22.0	20.0	21.0	1.8	8339	chr3R	30396194	intergenic	not near genes	chr3R	30400364	intergenic	not near genes	chr3R	30404533	5` UTR	CR45570 +	chr3R_39_30400001	chr3R_30400001	RAL-304_100b
3951	chr3R	30480458	30480471	chr3R	30482943	30482964	jockey	16	2490	40.0	21.0	30.5	0.5	2506	chr3R	30480458	intron	PH4alphaEFB +	chr3R	30481711	intron	PH4alphaEFB +	chr3R	30482964	intron	PH4alphaEFB +	chr3R_16_30480001	chr3R_30480001	RAL-304_100b
3952	chr3R	30480472	30480512	chr3R	30482940	30482950	jockey	36	2483	15.0	19.0	17.0	2.0	2478	chr3R	30480472	intron	PH4alphaEFB +	chr3R	30481711	intron	PH4alphaEFB +	chr3R	30482950	intron	PH4alphaEFB +	chr3R_36_30480001	chr3R_30480001	RAL-304_100b
3960	chr3R	30679494	30679552	chr3R	30686988	30687046	blood	41	7491	14.5	19.0	16.8	2.3	7552	chr3R	30679494	intergenic	not near genes	chr3R	30683270	intergenic	not near genes	chr3R	30687046	intergenic	not near genes	chr3R_41_30680001	chr3R_30680001	RAL-304_100b
3979	chr3R	31074218	31074246	chr3R	31081830	31081869	springer	25	7619	22.0	16.0	19.0	1.2	7651	chr3R	31074218	intron	Sox100B +	chr3R	31078044	intron	Sox100B +	chr3R	31081869	intron	Sox100B +	chr3R_25_31075001	chr3R_31075001	RAL-304_100b
3980	chr3R	31074247	31074258	chr3R	31081828	31081881	springer	10	7615	17.0	15.0	16.0	0.6	7634	chr3R	31074247	intron	Sox100B +	chr3R	31078064	intron	Sox100B +	chr3R	31081881	intron	Sox100B +	chr3R_10_31075001	chr3R_31075001	RAL-304_100b
3989	chr3R	31279353	31279384	chr3R	31285569	31285600	diver	16	6214	26.0	18.5	22.2	0.7	6247	chr3R	31279353	intergenic	not near genes	chr3R	31282476	intergenic	not near genes	chr3R	31285600	intergenic	not near genes	chr3R_16_31280001	chr3R_31280001	RAL-304_100b
3990	chr3R	31279385	31279402	chr3R	31285568	31285612	diver	16	6209	15.0	18.5	16.8	0.9	6227	chr3R	31279385	intergenic	not near genes	chr3R	31282498	intergenic	not near genes	chr3R	31285612	intergenic	not near genes	chr3R_16_31280001	chr3R_31280001	RAL-304_100b
3991	chr3R	31413067	31413074	chr3R	31418292	31418294	copia	6	5224	42.0	17.5	29.8	0.2	5227	chr3R	31413067	intron	Gprk2 +	chr3R	31415680	intron	Gprk2 +	chr3R	31418294	intron	Gprk2 +	chr3R_6_31415001	chr3R_31415001	RAL-304_100b
3992	chr3R	31413075	31413086	chr3R	31418290	31418311	copia	10	5223	35.5	16.0	25.8	0.4	5236	chr3R	31413075	intron	Gprk2 +	chr3R	31415693	intron	Gprk2 +	chr3R	31418311	intron	Gprk2 +	chr3R_10_31415001	chr3R_31415001	RAL-304_100b
3993	chr3R	31413087	31413123	chr3R	31418288	31418348	copia	27	5215	14.5	15.5	15.0	1.7	5261	chr3R	31413087	intron	Gprk2 +	chr3R	31415718	intron	Gprk2 +	chr3R	31418348	intron	Gprk2 +	chr3R_27_31415001	chr3R_31415001	RAL-304_100b
4007	chr3R	31691508	31691563	chr3R	31696299	31696353	Doc	50	4784	11.0	22.0	16.5	2.9	4845	chr3R	31691508	intergenic	not near genes	chr3R	31693930	intergenic	not near genes	chr3R	31696353	intergenic	not near genes	chr3R_50_31690001	chr3R_31690001	RAL-304_100b
4023	chr3R	31997974	31997977	chr3R	32005463	32005472	blood	6	7494	26.0	9.5	17.8	0.3	7498	chr3R	31997974	intron	heph -	chr3R	32001723	intron	heph -	chr3R	32005472	intron	heph -	chr3R_6_32000001	chr3R_32000001	RAL-304_100b
4024	chr3R	31997978	31998022	chr3R	32005461	32005517	blood	48	7493	10.0	9.0	9.5	4.6	7539	chr3R	31997978	intron	heph -	chr3R	32001748	intron	heph -	chr3R	32005517	intron	heph -	chr3R_48_32000001	chr3R_32000001	RAL-304_100b
4029	chr4	76475	76512	chr4	81938	81944	I-element	24	5464	18.5	11.0	14.8	1.5	5469	chr4	76475	intron	pan +	chr4	79210	intron	pan +	chr4	81944	intron	pan +	chr4_24_75001	chr4_75001	RAL-304_100b
4034	chr4	319967	320019	chr4	328168	328220	Stalker2	14	8192	10.0	4.0	7.0	1.8	8253	chr4	319967	3` UTR	CG32850 +	chr4	324094	intron	CG32850 +	chr4	328220	3` UTR,3` UTR	CG32850 +,PMCA -	chr4_14_320001	chr4_320001	RAL-304_100b
4036	chr4	671584	671597	chr4	680192	680205	Tirant	13	8606	38.0	21.5	29.8	0.4	8621	chr4	671584	intron	CG11360 +	chr4	675894	intron	CG11360 +	chr4	680205	intron	CG11360 +	chr4_13_675001	chr4_675001	RAL-304_100b
4037	chr4	671598	671632	chr4	680190	680208	Tirant	28	8603	21.5	21.0	21.2	1.3	8610	chr4	671598	intron	CG11360 +	chr4	675903	intron	CG11360 +	chr4	680208	intron	CG11360 +	chr4_28_675001	chr4_675001	RAL-304_100b
4042	chrX	295834	295881	chrX	303479	303526	412	36	7644	7.5	9.5	8.5	3.8	7692	chrX	295834	intron	CG3777 +	chrX	299680	intron	CG3777 +	chrX	303526	intron	CG3777 +	chrX_36_295001	chrX_295001	RAL-304_100b
4043	chrX	318448	318459	chrX	323559	323570	flea	8	5111	16.5	13.5	15.0	0.5	5122	chrX	318448	intron,intron	CG3777 +,CG32816 -	chrX	321009	intron,intron	CG3777 +,CG32816 -	chrX	323570	intron,intron	CG3777 +,CG32816 -	chrX_8_320001	chrX_320001	RAL-304_100b
4044	chrX	318462	318497	chrX	323558	323607	flea	19	5107	9.0	13.0	11.0	1.6	5145	chrX	318462	intron,intron	CG3777 +,CG32816 -	chrX	321034	intron,intron	CG3777 +,CG32816 -	chrX	323607	intron,intron	CG3777 +,CG32816 -	chrX_19_320001	chrX_320001	RAL-304_100b
4047	chrX	428396	428405	chrX	434606	434615	3S18	5	6210	26.0	7.5	16.8	0.3	6219	chrX	428396	intron	CG32816 -	chrX	431506	intron	CG32816 -	chrX	434615	intron	CG32816 -	chrX_5_430001	chrX_430001	RAL-304_100b
4048	chrX	428410	428451	chrX	434603	434641	3S18	29	6206	13.5	7.0	10.2	2.6	6231	chrX	428410	intron	CG32816 -	chrX	431526	intron	CG32816 -	chrX	434641	intron	CG32816 -	chrX_29_430001	chrX_430001	RAL-304_100b
4049	chrX	551401	551453	chrX	558984	559038	412	55	7581	19.0	19.5	19.2	2.7	7637	chrX	551401	intron	Appl +	chrX	555220	intron	Appl +	chrX	559038	intron	Appl +	chrX_55_555001	chrX_555001	RAL-304_100b
4055	chrX	812248	812266	chrX	817904	817922	297	4	5656	12.5	13.0	12.8	0.3	5674	chrX	812248	intron	CG43867 -	chrX	815085	intron	CG43867 -	chrX	817922	intron	CG43867 -	chrX_4_815001	chrX_815001	RAL-304_100b
4056	chrX	812270	812296	chrX	817898	817942	297	12	5646	7.5	11.5	9.5	1.1	5672	chrX	812270	intron	CG43867 -	chrX	815106	intron	CG43867 -	chrX	817942	intron	CG43867 -	chrX_12_815001	chrX_815001	RAL-304_100b
4057	chrX	827580	827605	chrX	835394	835414	roo	5	7815	18.5	8.0	13.2	0.4	7834	chrX	827580	intron	CG43867 -	chrX	831497	intron	CG43867 -	chrX	835414	intron	CG43867 -	chrX_5_830001	chrX_830001	RAL-304_100b
4058	chrX	827606	827632	chrX	835393	835416	roo	14	7810	8.5	7.0	7.8	1.6	7810	chrX	827606	intron	CG43867 -	chrX	831511	intron	CG43867 -	chrX	835416	intron	CG43867 -	chrX_14_830001	chrX_830001	RAL-304_100b
4059	chrX	906677	906710	chrX	908491	908524	S-element	29	1812	31.5	25.5	28.5	1.0	1847	chrX	906677	intron	CG43867 -	chrX	907600	intron	CG43867 -	chrX	908524	intron	CG43867 -	chrX_29_905001	chrX_905001	RAL-304_100b
4060	chrX	906712	906731	chrX	908490	908545	S-element	22	1807	14.5	25.0	19.8	1.1	1833	chrX	906712	intron	CG43867 -	chrX	907628	intron	CG43867 -	chrX	908545	intron	CG43867 -	chrX_22_905001	chrX_905001	RAL-304_100b
4063	chrX	1063733	1063745	chrX	1072551	1072563	roo	8	8818	17.5	15.0	16.2	0.5	8830	chrX	1063733	intron	CR44779 +	chrX	1068148	intron	CR44779 +	chrX	1072563	intron	CR44779 +	chrX_8_1065001	chrX_1065001	RAL-304_100b
4064	chrX	1063746	1063750	chrX	1072548	1072568	roo	4	8814	15.5	14.0	14.8	0.3	8822	chrX	1063746	intron	CR44779 +	chrX	1068157	intron	CR44779 +	chrX	1072568	intron	CR44779 +	chrX_4_1065001	chrX_1065001	RAL-304_100b
4070	chrX	1357756	1357764	chrX	1367951	1367953	Doc	5	10193	24.5	17.5	21.0	0.2	10197	chrX	1357756	intergenic	png -	chrX	1362854	intergenic	not near genes	chrX	1367953	intergenic	not near genes	chrX_5_1360001	chrX_1360001	RAL-304_100b
4071	chrX	1357765	1357776	chrX	1367950	1367971	Doc	8	10193	18.0	17.0	17.5	0.4	10206	chrX	1357765	intergenic	png -	chrX	1362868	intergenic	not near genes	chrX	1367971	intergenic	not near genes	chrX_8_1360001	chrX_1360001	RAL-304_100b
4072	chrX	1357777	1357796	chrX	1367948	1367991	Doc	15	10190	10.5	15.5	13.0	1.1	10214	chrX	1357777	intergenic	png -	chrX	1362884	intergenic	not near genes	chrX	1367991	intergenic	not near genes	chrX_15_1360001	chrX_1360001	RAL-304_100b
4073	chrX	1357799	1357806	chrX	1367945	1368001	Doc	11	10186	7.5	14.5	11.0	0.9	10202	chrX	1357799	intergenic	png -	chrX	1362900	intergenic	not near genes	chrX	1368001	intergenic	not near genes	chrX_11_1360001	chrX_1360001	RAL-304_100b
4078	chrX	1518017	1518075	chrX	1523444	1523460	jockey	34	5421	10.0	18.0	14.0	2.3	5443	chrX	1518017	intergenic	inc +	chrX	1520738	intergenic	not near genes	chrX	1523460	intergenic	not near genes	chrX_34_1520001	chrX_1520001	RAL-304_100b
4080	chrX	1627966	1627985	chrX	1635444	1635458	gtwin	11	7487	19.5	15.0	17.2	0.6	7492	chrX	1627966	intron,intron	Mur2B -,br +	chrX	1631712	intron,intron	Mur2B -,br +	chrX	1635458	intron,intron	Mur2B -,br +	chrX_11_1630001	chrX_1630001	RAL-304_100b
4082	chrX	1930513	1930567	chrX	1938109	1938157	opus	21	7591	3.0	6.0	4.5	3.8	7644	chrX	1930513	3` UTR	CG11596 +	chrX	1934335	intergenic	not near genes	chrX	1938157	3` UTR	CG3857 -	chrX_21_1930001	chrX_1930001	RAL-304_100b
4083	chrX	1954863	1954875	chrX	1962828	1962840	Stalker2	9	7965	33.5	9.5	21.5	0.4	7977	chrX	1954863	intron	Hr4 +	chrX	1958852	intron	Hr4 +	chrX	1962840	intron	Hr4 +	chrX_9_1955001	chrX_1955001	RAL-304_100b
4084	chrX	1954876	1954919	chrX	1962826	1962846	Stalker2	27	7953	11.5	8.5	10.0	2.5	7970	chrX	1954876	intron	Hr4 +	chrX	1958861	intron	Hr4 +	chrX	1962846	intron	Hr4 +	chrX_27_1955001	chrX_1955001	RAL-304_100b
4087	chrX	2399818	2399824	chrX	2408189	2408192	roo	5	8373	47.5	0.5	24.0	0.2	8374	chrX	2399818	intergenic	not near genes	chrX	2404005	intergenic	not near genes	chrX	2408192	intergenic	not near genes	chrX_5_2400001	chrX_2400001	RAL-304_100b
4088	chrX	2399825	2399870	chrX	2408188	2408236	roo	34	8362	15.5	0.5	8.0	3.8	8411	chrX	2399825	intergenic	not near genes	chrX	2404030	intergenic	not near genes	chrX	2408236	intergenic	not near genes	chrX_34_2400001	chrX_2400001	RAL-304_100b
4091	chrX	2610367	2610415	chrX	2617509	2617557	HMS-Beagle	9	7141	14.5	12.0	13.2	0.6	7190	chrX	2610367	intergenic	CG8636 -	chrX	2613962	intergenic	not near genes	chrX	2617557	intergenic	Tsp3A -	chrX_9_2610001	chrX_2610001	RAL-304_100b
4092	chrX	2664362	2664414	chrX	2665533	2665585	1360	29	1165	8.5	16.5	12.5	2.1	1223	chrX	2664362	intron	sgg +	chrX	2664974	intron	sgg +	chrX	2665585	intron	sgg +	chrX_29_2660001	chrX_2660001	RAL-304_100b
4095	chrX	2823769	2823780	chrX	2832342	2832353	roo	5	8573	29.0	12.5	20.8	0.2	8584	chrX	2823769	intron	kirre +	chrX	2828061	intron	kirre +	chrX	2832353	intron	kirre +	chrX_5_2825001	chrX_2825001	RAL-304_100b
4096	chrX	2844883	2844931	chrX	2852313	2852359	mdg1	27	7433	8.5	10.0	9.2	2.6	7476	chrX	2844883	intron	kirre +	chrX	2848621	intron	kirre +	chrX	2852359	intron	kirre +	chrX_27_2845001	chrX_2845001	RAL-304_100b
4100	chrX	3058009	3058049	chrX	3058269	3058315	pogo	20	265	12.0	9.5	10.8	1.7	306	chrX	3058009	intron	kirre +	chrX	3058162	intron	kirre +	chrX	3058315	intron	kirre +	chrX_20_3055001	chrX_3055001	RAL-304_100b
4101	chrX	3075605	3075644	chrX	3080941	3080976	Transpac	7	5335	9.0	1.0	5.0	1.2	5371	chrX	3075605	intron	kirre +	chrX	3078290	intron	kirre +	chrX	3080976	intron	kirre +	chrX_7_3075001	chrX_3075001	RAL-304_100b
4106	chrX	3178485	3178492	chrX	3186173	3186180	opus	4	7688	6.0	8.0	7.0	0.5	7695	chrX	3178485	intron	dnc +	chrX	3182332	intron	dnc +	chrX	3186180	intron	dnc +	chrX_4_3180001	chrX_3180001	RAL-304_100b
4110	chrX	3288105	3288107	chrX	9845361	9845361	Tirant	8	6557255	67.0	86.0	76.5	0.1	6557256	chrX	3288105	intron	dnc +	chrX	6566733	intron	CG34417 +	chrX	9845361	intron	CG32698 +	chrX_8_6565001	chrX_6565001	RAL-304_100b
4113	chrX	3415016	3415021	chrX	3421226	3421231	3S18	4	6210	2.0	9.5	5.8	0.6	6215	chrX	3415016	intron,intron	CR44999 +,CG12535 -	chrX	3418124	intron,intron	CR44999 +,CG12535 -	chrX	3421231	intron,intron	CR44999 +,CG12535 -	chrX_4_3415001	chrX_3415001	RAL-304_100b
4114	chrX	3415022	3415028	chrX	3421215	3421236	3S18	7	6205	2.0	9.5	5.8	1.0	6214	chrX	3415022	intron,intron	CR44999 +,CG12535 -	chrX	3418129	intron,intron	CR44999 +,CG12535 -	chrX	3421236	intron,intron	CR44999 +,CG12535 -	chrX_7_3415001	chrX_3415001	RAL-304_100b
4115	chrX	3415030	3415047	chrX	3421210	3421257	3S18	15	6206	1.5	9.0	5.2	2.4	6227	chrX	3415030	intron,intron	CR44999 +,CG12535 -	chrX	3418144	intron,intron	CR44999 +,CG12535 -	chrX	3421257	intron,intron	CR44999 +,CG12535 -	chrX_15_3415001	chrX_3415001	RAL-304_100b
4118	chrX	3493065	3493120	chrX	3502248	3502287	roo	42	9180	10.5	11.5	11.0	3.5	9222	chrX	3493065	intron,intron	CR44999 +,Gas8 -	chrX	3497676	intron,intron	CR44999 +,Gas8 -	chrX	3502287	intron,intron	CR44999 +,Gas8 -	chrX_42_3495001	chrX_3495001	RAL-304_100b
4121	chrX	3597528	3597584	chrX	3619721	3619762	roo	53	22190	17.5	11.0	14.2	3.5	22234	chrX	3597528	intron	AstA-R1 +	chrX	3608645	intron	AstA-R1 +	chrX	3619762	intron	AstA-R1 +	chrX_53_3605001	chrX_3605001	RAL-304_100b
4127	chrX	3726741	3726791	chrX	3730163	3730178	NOF	24	3416	13.0	0.0	6.5	3.2	3437	chrX	3726741	intron	tlk +	chrX	3728460	intron	tlk +	chrX	3730178	intron	tlk +	chrX_24_3725001	chrX_3725001	RAL-304_100b
4128	chrX	3752387	3752399	chrX	3764761	3764773	17.6	5	12374	32.0	31.0	31.5	0.2	12386	chrX	3752387	intron	tlk +	chrX	3758580	intron	tlk +	chrX	3764773	intron	tlk +	chrX_5_3755001	chrX_3755001	RAL-304_100b
4129	chrX	3842295	3842353	chrX	3842561	3842619	pogo	37	265	14.0	13.5	13.8	2.5	324	chrX	3842295	intron	ec +	chrX	3842457	intron	ec +	chrX	3842619	intron	ec +	chrX_37_3840001	chrX_3840001	RAL-304_100b
4135	chrX	3986836	3986894	chrX	3994494	3994545	412	42	7655	8.5	13.5	11.0	3.5	7709	chrX	3986836	intergenic	not near genes	chrX	3990690	intergenic	not near genes	chrX	3994545	intergenic	not near genes	chrX_42_3990001	chrX_3990001	RAL-304_100b
4141	chrX	4157871	4157922	chrX	4164949	4165000	297	42	7074	13.0	11.5	12.2	3.2	7129	chrX	4157871	intron	Fas2 -	chrX	4161436	intron	Fas2 -	chrX	4165000	intron	Fas2 -	chrX_42_4160001	chrX_4160001	RAL-304_100b
4152	chrX	4700368	4700377	chrX	4700734	4700745	jockey	6	368	27.0	9.5	18.2	0.3	377	chrX	4700368	3` UTR	ctp +	chrX	4700556	3` UTR	ctp +	chrX	4700745	3` UTR	ctp +	chrX_6_4700001	chrX_4700001	RAL-304_100b
4153	chrX	4700378	4700426	chrX	4700733	4700757	jockey	36	361	7.5	9.0	8.2	3.9	379	chrX	4700378	3` UTR	ctp +	chrX	4700568	3` UTR	ctp +	chrX	4700757	3` UTR	ctp +	chrX_36_4700001	chrX_4700001	RAL-304_100b
4155	chrX	4731794	4731809	chrX	4736912	4736922	jockey	9	5116	29.5	13.5	21.5	0.4	5128	chrX	4731794	intergenic	not near genes	chrX	4734358	intergenic	not near genes	chrX	4736922	intergenic	not near genes	chrX_9_4730001	chrX_4730001	RAL-304_100b
4156	chrX	4731812	4731826	chrX	4736910	4736922	jockey	4	5099	23.0	13.0	18.0	0.2	5110	chrX	4731812	intergenic	not near genes	chrX	4734367	intergenic	not near genes	chrX	4736922	intergenic	not near genes	chrX_4_4730001	chrX_4730001	RAL-304_100b
4157	chrX	4763242	4763281	chrX	4763738	4763794	Stalker4	24	510	18.0	16.5	17.2	1.3	552	chrX	4763242	intergenic	not near genes	chrX	4763518	intergenic	not near genes	chrX	4763794	intergenic	not near genes	chrX_24_4760001	chrX_4760001	RAL-304_100b
4158	chrX	4792356	4792392	chrX	4792814	4792849	jockey	24	456	18.5	16.0	17.2	1.3	493	chrX	4792356	intergenic	not near genes	chrX	4792602	intergenic	not near genes	chrX	4792849	intergenic	not near genes	chrX_24_4790001	chrX_4790001	RAL-304_100b
4159	chrX	4792398	4792404	chrX	4792811	4792816	jockey	7	443	13.0	15.0	14.0	0.5	418	chrX	4792398	intergenic	not near genes	chrX	4792607	intergenic	not near genes	chrX	4792816	intergenic	not near genes	chrX_7_4790001	chrX_4790001	RAL-304_100b
4161	chrX	4827947	4827986	chrX	4835343	4835382	Stalker4	12	7393	15.0	13.0	14.0	0.8	7435	chrX	4827947	intergenic	not near genes	chrX	4831664	intergenic	not near genes	chrX	4835382	intergenic	not near genes	chrX_12_4830001	chrX_4830001	RAL-304_100b
4162	chrX	4827988	4828002	chrX	4835338	4835364	Stalker4	32	7371	9.0	11.0	10.0	2.9	7376	chrX	4827988	intergenic	not near genes	chrX	4831676	intergenic	not near genes	chrX	4835364	intergenic	not near genes	chrX_32_4830001	chrX_4830001	RAL-304_100b
4168	chrX	4990034	4990075	chrX	4997273	4997314	roo	24	7238	10.0	10.5	10.2	2.1	7280	chrX	4990034	intron	CR44833 -	chrX	4993674	intron	CR44833 -	chrX	4997314	intron	CR44833 -	chrX_24_4990001	chrX_4990001	RAL-304_100b
4169	chrX	5096253	5096273	chrX	5103843	5103863	springer	17	7587	32.0	21.5	26.8	0.6	7610	chrX	5096253	intron,intron	CG15465 +,rg +	chrX	5100058	intron,intron	CG15465 +,rg +	chrX	5103863	intron,intron	CG15465 +,rg +	chrX_17_5100001	chrX_5100001	RAL-304_100b
4170	chrX	5096277	5096305	chrX	5103838	5103859	springer	29	7577	17.0	18.5	17.8	1.5	7582	chrX	5096277	intron,intron	CG15465 +,rg +	chrX	5100068	intron,intron	CG15465 +,rg +	chrX	5103859	intron,intron	CG15465 +,rg +	chrX_29_5100001	chrX_5100001	RAL-304_100b
4177	chrX	5338684	5338734	chrX	5339962	5339991	jockey	34	1272	11.0	14.5	12.8	2.5	1307	chrX	5338684	intergenic	not near genes	chrX	5339338	intergenic	not near genes	chrX	5339991	intergenic	SK +	chrX_34_5335001	chrX_5335001	RAL-304_100b
4189	chrX	5524819	5524829	chrX	5528707	5528717	412	4	3888	22.0	6.5	14.2	0.3	3898	chrX	5524819	intergenic	snoRNA:Psi28S-3342 -	chrX	5526768	intergenic	not near genes	chrX	5528717	intergenic	Vsx2 -	chrX_4_5525001	chrX_5525001	RAL-304_100b
4190	chrX	5524830	5524853	chrX	5528703	5528741	412	10	3883	16.5	6.5	11.5	0.8	3911	chrX	5524830	intergenic	snoRNA:Psi28S-3342 -	chrX	5526786	intergenic	not near genes	chrX	5528741	intergenic	Vsx2 -	chrX_10_5525001	chrX_5525001	RAL-304_100b
4193	chrX	5727400	5727416	chrX	5732164	5732179	Doc	11	4763	10.0	7.5	8.8	1.1	4779	chrX	5727400	intron	CG32758 -	chrX	5729790	intron	CG32758 -	chrX	5732179	intron	CG32758 -	chrX_11_5725001	chrX_5725001	RAL-304_100b
4196	chrX	5883784	5883838	chrX	5884050	5884103	pogo	39	265	6.5	6.5	6.5	5.2	319	chrX	5883784	intron	CR45668 -	chrX	5883944	intron	CR45668 -	chrX	5884103	intron	CR45668 -	chrX_39_5880001	chrX_5880001	RAL-304_100b
4197	chrX	5884141	5884190	chrX	5884407	5884456	pogo	28	264	13.5	10.0	11.8	2.2	315	chrX	5884141	intron	CR45668 -	chrX	5884298	intron	CR45668 -	chrX	5884456	intron	CR45668 -	chrX_28_5880001	chrX_5880001	RAL-304_100b
4202	chrX	6171578	6171586	chrX	6179020	6179029	Quasimodo	6	7449	21.0	12.5	16.8	0.3	7451	chrX	6171578	intron	Ca-alpha1T -	chrX	6175304	intron	Ca-alpha1T -	chrX	6179029	intron	Ca-alpha1T -	chrX_6_6175001	chrX_6175001	RAL-304_100b
4203	chrX	6171587	6171610	chrX	6179014	6179068	Quasimodo	17	7441	13.0	11.0	12.0	1.3	7481	chrX	6171587	intron	Ca-alpha1T -	chrX	6175328	intron	Ca-alpha1T -	chrX	6179068	intron	Ca-alpha1T -	chrX_17_6175001	chrX_6175001	RAL-304_100b
4206	chrX	6335211	6335221	chrX	6337726	6337756	Tirant	15	2527	0.5	10.5	5.5	2.3	2545	chrX	6335211	intergenic	not near genes	chrX	6336484	intergenic	not near genes	chrX	6337756	intergenic	CG3842 +	chrX_15_6335001	chrX_6335001	RAL-304_100b
4207	chrX	6335223	6335243	chrX	6337725	6337778	Tirant	21	2527	0.0	10.5	5.2	3.4	2555	chrX	6335223	intergenic	not near genes	chrX	6336500	intergenic	not near genes	chrX	6337778	5` UTR	CG3842 +	chrX_21_6335001	chrX_6335001	RAL-304_100b
4209	chrX	6392856	6392864	chrX	6397639	6397654	Doc	6	4788	31.5	12.0	21.8	0.3	4798	chrX	6392856	intergenic	not near genes	chrX	6395255	intergenic	not near genes	chrX	6397654	intergenic	not near genes	chrX_6_6395001	chrX_6395001	RAL-304_100b
4210	chrX	6392866	6392882	chrX	6397635	6397672	Doc	22	4785	18.5	10.0	14.2	1.4	4806	chrX	6392866	intergenic	not near genes	chrX	6395269	intergenic	not near genes	chrX	6397672	intergenic	not near genes	chrX_22_6395001	chrX_6395001	RAL-304_100b
4211	chrX	6392883	6392903	chrX	6397632	6397653	Doc	10	4776	11.0	9.0	10.0	0.9	4770	chrX	6392883	intergenic	not near genes	chrX	6395268	intergenic	not near genes	chrX	6397653	intergenic	not near genes	chrX_10_6395001	chrX_6395001	RAL-304_100b
4212	chrX	6445318	6445334	chrX	6451101	6451117	297	8	5783	6.5	17.5	12.0	0.6	5799	chrX	6445318	intron	CG42340 -	chrX	6448218	intron	CG42340 -	chrX	6451117	intron	CG42340 -	chrX_8_6445001	chrX_6445001	RAL-304_100b
4216	chrX	6562796	6562810	chrX	6571303	6571317	Tirant	7	8506	29.5	24.5	27.0	0.2	8521	chrX	6562796	intron	CG34417 +	chrX	6567056	intron	CG34417 +	chrX	6571317	intron	CG34417 +	chrX_7_6565001	chrX_6565001	RAL-304_100b
4217	chrX	6562812	6562849	chrX	6571299	6571337	Tirant	42	8499	14.0	22.0	18.0	2.2	8525	chrX	6562812	intron	CG34417 +	chrX	6567074	intron	CG34417 +	chrX	6571337	intron	CG34417 +	chrX_42_6565001	chrX_6565001	RAL-304_100b
4234	chrX	7023580	7023631	chrX	7030995	7031036	Tabor	37	7411	14.0	14.5	14.2	2.4	7456	chrX	7023580	intron	CG12541 -	chrX	7027308	intron	CG12541 -	chrX	7031036	intron	CG12541 -	chrX_37_7025001	chrX_7025001	RAL-304_100b
4235	chrX	7125222	7125277	chrX	7134406	7134431	roo	52	9181	4.5	15.0	9.8	4.8	9209	chrX	7125222	intergenic	not near genes	chrX	7129826	intergenic	not near genes	chrX	7134431	intergenic	not near genes	chrX_52_7125001	chrX_7125001	RAL-304_100b
4252	chrX	7702882	7702893	chrX	7703346	7703357	jockey	5	461	27.5	13.5	20.5	0.2	475	chrX	7702882	intron	CHES-1-like -	chrX	7703120	intron	CHES-1-like -	chrX	7703357	intron	CHES-1-like -	chrX_5_7700001	chrX_7700001	RAL-304_100b
4253	chrX	7702895	7702927	chrX	7703343	7703351	jockey	33	459	15.5	12.5	14.0	2.2	456	chrX	7702895	intron	CHES-1-like -	chrX	7703123	intron	CHES-1-like -	chrX	7703351	intron	CHES-1-like -	chrX_33_7700001	chrX_7700001	RAL-304_100b
4258	chrX	7845704	7845759	chrX	7847214	7847273	hopper2	52	1514	8.5	9.5	9.0	5.2	1569	chrX	7845704	intergenic	not near genes	chrX	7846488	intergenic	not near genes	chrX	7847273	intergenic	not near genes	chrX_52_7845001	chrX_7845001	RAL-304_100b
4265	chrX	8364809	8364867	chrX	8365238	8365296	BS	31	426	5.5	10.5	8.0	3.4	487	chrX	8364809	intron	nAChRalpha3 -	chrX	8365052	intron	nAChRalpha3 -	chrX	8365296	intron	nAChRalpha3 -	chrX_31_8365001	chrX_8365001	RAL-304_100b
4278	chrX	8922305	8922362	chrX	8922764	8922821	jockey	47	456	14.0	14.0	14.0	3.1	516	chrX	8922305	intron	rdgA +	chrX	8922563	intron	rdgA +	chrX	8922821	intron	rdgA +	chrX_47_8920001	chrX_8920001	RAL-304_100b
4279	chrX	8927569	8927593	chrX	8929852	8929877	NOF	13	2291	21.5	11.5	16.5	0.7	2308	chrX	8927569	intron	rdgA +	chrX	8928723	intron	rdgA +	chrX	8929877	intron	rdgA +	chrX_13_8925001	chrX_8925001	RAL-304_100b
4280	chrX	8927596	8927616	chrX	8929850	8929889	NOF	12	2282	14.5	10.5	12.5	0.9	2293	chrX	8927596	intron	rdgA +	chrX	8928742	intron	rdgA +	chrX	8929889	intron	rdgA +	chrX_12_8925001	chrX_8925001	RAL-304_100b
4282	chrX	8948732	8948788	chrX	8956267	8956323	roo	21	7529	4.5	8.5	6.5	2.8	7591	chrX	8948732	intron	rdgA +	chrX	8952528	intron	rdgA +	chrX	8956323	intron	rdgA +	chrX_21_8950001	chrX_8950001	RAL-304_100b
4289	chrX	9508116	9508138	chrX	9509659	9509681	jockey	18	1542	25.5	19.5	22.5	0.8	1565	chrX	9508116	intron	CG32700 -	chrX	9508898	intron	CG32700 -	chrX	9509681	intron	CG32700 -	chrX_18_9505001	chrX_9505001	RAL-304_100b
4290	chrX	9508139	9508164	chrX	9509654	9509690	jockey	26	1535	15.5	18.0	16.8	1.5	1551	chrX	9508139	intron	CG32700 -	chrX	9508914	intron	CG32700 -	chrX	9509690	intron	CG32700 -	chrX_26_9505001	chrX_9505001	RAL-304_100b
4294	chrX	9575780	9575822	chrX	9576116	9576171	mdg3	32	342	17.0	13.5	15.2	2.0	391	chrX	9575780	intron,exon	CG32699 -,CG42395 -	chrX	9575976	intron,intron	CG32699 -,CG42395 -	chrX	9576171	intron,5` UTR	CG32699 -,CG42395 -	chrX_32_9575001	chrX_9575001	RAL-304_100b
4303	chrX	10138195	10138243	chrX	10145724	10145772	412	26	7529	10.0	10.0	10.0	2.4	7577	chrX	10138195	intron,intron	RhoU +,CR44894 -	chrX	10141984	intron,intron	RhoU +,CR44894 -	chrX	10145772	intron,intron	RhoU +,CR44894 -	chrX_26_10140001	chrX_10140001	RAL-304_100b
4309	chrX	10267297	10267334	chrX	10276472	10276508	roo	8	9175	4.0	6.5	5.2	1.3	9211	chrX	10267297	3` UTR	alpha-Man-I -	chrX	10271902	intron	alpha-Man-I -	chrX	10276508	3` UTR	alpha-Man-I -	chrX_8_10270001	chrX_10270001	RAL-304_100b
4312	chrX	10348776	10348825	chrX	10356366	10356379	springer	12	7585	9.5	14.0	11.8	0.9	7603	chrX	10348776	intergenic	snoRNA:U3:9B +	chrX	10352578	intergenic	not near genes	chrX	10356379	intergenic	l(1)G0289 -	chrX_12_10350001	chrX_10350001	RAL-304_100b
4317	chrX	10550832	10550871	chrX	10552324	10552363	hobo	28	1490	20.5	14.0	17.2	1.5	1531	chrX	10550832	intron	spri -	chrX	10551598	intron	spri -	chrX	10552363	intron	spri -	chrX_28_10550001	chrX_10550001	RAL-304_100b
4318	chrX	10550873	10550888	chrX	10552318	10552365	hobo	13	1483	15.5	11.5	13.5	0.9	1492	chrX	10550873	intron	spri -	chrX	10551619	intron	spri -	chrX	10552365	intron	spri -	chrX_13_10550001	chrX_10550001	RAL-304_100b
4319	chrX	10686031	10686082	chrX	10691193	10691237	roo	33	5160	9.0	12.5	10.8	2.8	5206	chrX	10686031	intron	X11Lbeta +	chrX	10688634	intron	X11Lbeta +	chrX	10691237	intron	X11Lbeta +	chrX_33_10685001	chrX_10685001	RAL-304_100b
4322	chrX	10772649	10772698	chrX	10772757	10772806	Tirant	39	102	15.5	5.0	10.2	3.5	157	chrX	10772649	intron	CG15211 +	chrX	10772728	intron	CG15211 +	chrX	10772806	intron	CG15211 +	chrX_39_10770001	chrX_10770001	RAL-304_100b
4326	chrX	11095975	11096025	chrX	11103102	11103152	HMS-Beagle	15	7127	9.0	17.5	13.2	1.1	7177	chrX	11095975	intergenic	not near genes	chrX	11099564	intergenic	not near genes	chrX	11103152	intron	CG42249 +	chrX_15_11095001	chrX_11095001	RAL-304_100b
4330	chrX	11184226	11184268	chrX	11189327	11189368	flea	22	5098	23.5	9.0	16.2	1.3	5142	chrX	11184226	intergenic	not near genes	chrX	11186797	intergenic	not near genes	chrX	11189368	intergenic	not near genes	chrX_22_11185001	chrX_11185001	RAL-304_100b
4331	chrX	11184277	11184280	chrX	11189326	11189381	flea	5	5090	17.0	9.0	13.0	0.4	5104	chrX	11184277	intergenic	not near genes	chrX	11186829	intergenic	not near genes	chrX	11189381	intergenic	not near genes	chrX_5_11185001	chrX_11185001	RAL-304_100b
4335	chrX	11312034	11312077	chrX	11319412	11319445	Stalker2	28	7369	21.0	16.0	18.5	1.4	7411	chrX	11312034	intergenic	not near genes	chrX	11315740	intergenic	not near genes	chrX	11319445	intergenic	not near genes	chrX_28_11315001	chrX_11315001	RAL-304_100b
4336	chrX	11312079	11312090	chrX	11319410	11319438	Stalker2	16	7363	12.0	14.0	13.0	1.1	7359	chrX	11312079	intergenic	not near genes	chrX	11315758	intergenic	not near genes	chrX	11319438	intergenic	not near genes	chrX_16_11315001	chrX_11315001	RAL-304_100b
4338	chrX	11535019	11535046	chrX	11541514	11541541	Burdock	17	6493	17.0	15.0	16.0	1.0	6522	chrX	11535019	intron	Drak +	chrX	11538280	intron	Drak +	chrX	11541541	intron	Drak +	chrX_17_11535001	chrX_11535001	RAL-304_100b
4340	chrX	11633392	11633443	chrX	11640471	11640522	297	31	7078	13.5	11.5	12.5	2.3	7130	chrX	11633392	intron	Ptp10D +	chrX	11636957	intron	Ptp10D +	chrX	11640522	intron	Ptp10D +	chrX_31_11635001	chrX_11635001	RAL-304_100b
4341	chrX	11645088	11645136	chrX	11648283	11648324	NOF	17	3193	5.5	9.5	7.5	2.0	3236	chrX	11645088	intron	Ptp10D +	chrX	11646706	intron	Ptp10D +	chrX	11648324	intron	Ptp10D +	chrX_17_11645001	chrX_11645001	RAL-304_100b
4351	chrX	12168114	12168139	chrX	12173581	12173603	I-element	12	5467	18.0	13.0	15.5	0.7	5489	chrX	12168114	intron	Ten-a +	chrX	12170858	intron	Ten-a +	chrX	12173603	intron	Ten-a +	chrX_12_12170001	chrX_12170001	RAL-304_100b
4352	chrX	12168141	12168154	chrX	12173573	12173621	I-element	14	5461	17.5	11.5	14.5	0.9	5480	chrX	12168141	intron	Ten-a +	chrX	12170881	intron	Ten-a +	chrX	12173621	intron	Ten-a +	chrX_14_12170001	chrX_12170001	RAL-304_100b
4357	chrX	12301948	12301988	chrX	12303264	12303268	X-element	18	1321	6.5	2.0	4.2	3.5	1320	chrX	12301948	intron	Ten-a +	chrX	12302608	intron	Ten-a +	chrX	12303268	intron	Ten-a +	chrX_18_12300001	chrX_12300001	RAL-304_100b
4362	chrX	12381833	12381898	chrX	12385771	12385818	flea	12	3933	0.0	11.0	5.5	1.8	3985	chrX	12381833	intergenic	not near genes	chrX	12383826	intergenic	not near genes	chrX	12385818	intergenic	not near genes	chrX_12_12380001	chrX_12380001	RAL-304_100b
4380	chrX	12930574	12930585	chrX	12937714	12937726	HMS-Beagle	11	7141	10.5	17.5	14.0	0.7	7152	chrX	12930574	intron	fne +	chrX	12934150	intron	fne +	chrX	12937726	intron	fne +	chrX_11_12930001	chrX_12930001	RAL-304_100b
4381	chrX	12930586	12930611	chrX	12937713	12937740	HMS-Beagle	12	7136	7.0	17.5	12.2	0.9	7154	chrX	12930586	intron	fne +	chrX	12934163	intron	fne +	chrX	12937740	intron	fne +	chrX_12_12930001	chrX_12930001	RAL-304_100b
4400	chrX	13401458	13401518	chrX	13401834	13401895	jockey	22	374	8.5	5.0	6.8	2.8	437	chrX	13401458	intergenic	CG1673 +,CG12725 -	chrX	13401676	intergenic	CG12725 -,CG1673 +	chrX	13401895	3` UTR	CG12725 -	chrX_22_13400001	chrX_13400001	RAL-304_100b
4402	chrX	13429471	13429487	chrX	13430630	13430661	jockey	10	1171	0.0	14.0	7.0	1.2	1190	chrX	13429471	intergenic	not near genes	chrX	13430066	intergenic	not near genes	chrX	13430661	intergenic	not near genes	chrX_10_13430001	chrX_13430001	RAL-304_100b
4406	chrX	13463628	13463673	chrX	13469225	13469275	mdg3	21	5602	9.5	8.0	8.8	2.1	5647	chrX	13463628	intron	Neto +	chrX	13466452	intron	Neto +	chrX	13469275	intron	Neto +	chrX_21_13465001	chrX_13465001	RAL-304_100b
4413	chrX	13937959	13938002	chrX	13941255	13941298	I-element	25	3293	12.5	12.0	12.2	1.9	3339	chrX	13937959	intron	mamo -	chrX	13939628	intron	mamo -	chrX	13941298	intron	mamo -	chrX_25_13935001	chrX_13935001	RAL-304_100b
4416	chrX	14104997	14105023	chrX	14114173	14114199	roo	21	9175	24.5	12.0	18.2	1.1	9202	chrX	14104997	intergenic	not near genes	chrX	14109598	intergenic	not near genes	chrX	14114199	5` UTR	CR44657 +	chrX_21_14105001	chrX_14105001	RAL-304_100b
4417	chrX	14105024	14105056	chrX	14114171	14114222	roo	26	9170	11.5	11.0	11.2	2.1	9198	chrX	14105024	intergenic	not near genes	chrX	14109623	intergenic	not near genes	chrX	14114222	5` UTR	CR44657 +	chrX_26_14105001	chrX_14105001	RAL-304_100b
4419	chrX	14157570	14157595	chrX	14163252	14163277	297	19	5681	16.0	11.5	13.8	1.3	5707	chrX	14157570	intergenic	not near genes	chrX	14160424	intergenic	not near genes	chrX	14163277	intergenic	not near genes	chrX_19_14160001	chrX_14160001	RAL-304_100b
4433	chrX	14416289	14416337	chrX	14421081	14421089	F-element	15	4788	4.0	8.0	6.0	2.1	4800	chrX	14416289	intron	dpr8 +	chrX	14418689	intron	dpr8 +	chrX	14421089	intron	dpr8 +	chrX_15_14415001	chrX_14415001	RAL-304_100b
4435	chrX	14589685	14589695	chrX	14589950	14589953	pogo	10	264	14.5	4.0	9.2	1.0	268	chrX	14589685	intron	CG9413 -	chrX	14589819	intron	CG9413 -	chrX	14589953	intron	CG9413 -	chrX_10_14585001	chrX_14585001	RAL-304_100b
4438	chrX	14636439	14636447	chrX	14641905	14641912	I-element	6	5466	33.0	14.0	23.5	0.2	5473	chrX	14636439	intron	NetA -	chrX	14639176	intron	NetA -	chrX	14641912	intron	NetA -	chrX_6_14635001	chrX_14635001	RAL-304_100b
4439	chrX	14636450	14636456	chrX	14641915	14641922	I-element	6	5466	26.5	20.5	23.5	0.2	5472	chrX	14636450	intron	NetA -	chrX	14639186	intron	NetA -	chrX	14641922	intron	NetA -	chrX_6_14635001	chrX_14635001	RAL-304_100b
4440	chrX	14636457	14636469	chrX	14641912	14641935	I-element	13	5464	22.0	18.5	20.2	0.6	5478	chrX	14636457	intron	NetA -	chrX	14639196	intron	NetA -	chrX	14641935	intron	NetA -	chrX_13_14635001	chrX_14635001	RAL-304_100b
4441	chrX	14636470	14636484	chrX	14641909	14641950	I-element	8	5460	17.0	16.5	16.8	0.4	5480	chrX	14636470	intron	NetA -	chrX	14639210	intron	NetA -	chrX	14641950	intron	NetA -	chrX_8_14635001	chrX_14635001	RAL-304_100b
4444	chrX	14778012	14778058	chrX	14782834	14782861	Doc	16	4821	6.5	15.5	11.0	1.3	4849	chrX	14778012	intergenic	CG5347 +	chrX	14780436	intergenic	not near genes	chrX	14782861	intergenic	Ag5r2 -	chrX_16_14780001	chrX_14780001	RAL-304_100b
4448	chrX	14818737	14818792	chrX	14823966	14824014	copia	35	5225	16.5	9.5	13.0	2.5	5277	chrX	14818737	intron	rut -	chrX	14821376	intron	rut -	chrX	14824014	intron	rut -	chrX_35_14820001	chrX_14820001	RAL-304_100b
4450	chrX	14936823	14936890	chrX	14946115	14946172	roo	32	9286	0.0	10.0	5.0	5.3	9349	chrX	14936823	intron	pdgy -	chrX	14941498	intron	pdgy -	chrX	14946172	intron	pdgy -	chrX_32_14940001	chrX_14940001	RAL-304_100b
4458	chrX	15273694	15273713	chrX	15274876	15274905	1360	15	1188	28.0	21.5	24.8	0.6	1211	chrX	15273694	intergenic	not near genes	chrX	15274300	intergenic	not near genes	chrX	15274905	intergenic	not near genes	chrX_15_15270001	chrX_15270001	RAL-304_100b
4459	chrX	15273714	15273739	chrX	15274873	15274906	1360	27	1181	16.5	20.0	18.2	1.4	1192	chrX	15273714	intergenic	not near genes	chrX	15274310	intergenic	not near genes	chrX	15274906	intergenic	not near genes	chrX_27_15270001	chrX_15270001	RAL-304_100b
4462	chrX	15326710	15326715	chrX	15326931	15326938	I-element	6	223	0.5	7.0	3.8	1.2	228	chrX	15326710	3` UTR	Top1 +	chrX	15326824	3` UTR	Top1 +	chrX	15326938	3` UTR	Top1 +	chrX_6_15325001	chrX_15325001	RAL-304_100b
4465	chrX	15413028	15413083	chrX	15417355	15417395	Juan	40	4322	17.5	14.0	15.8	2.4	4367	chrX	15413028	intron	Cngl -	chrX	15415212	intron	Cngl -	chrX	15417395	intron	Cngl -	chrX_40_15415001	chrX_15415001	RAL-304_100b
4466	chrX	15435690	15435701	chrX	15436138	15436159	rover	12	456	0.5	26.5	13.5	0.8	469	chrX	15435690	intron	Cngl -	chrX	15435924	intron	Cngl -	chrX	15436159	intron	Cngl -	chrX_12_15435001	chrX_15435001	RAL-304_100b
4467	chrX	15435702	15435704	chrX	15436113	15436147	rover	5	441	0.5	19.5	10.0	0.5	445	chrX	15435702	intron	Cngl -	chrX	15435924	intron	Cngl -	chrX	15436147	intron	Cngl -	chrX_5_15435001	chrX_15435001	RAL-304_100b
4485	chrX	16222753	16222809	chrX	16231128	16231184	roo	17	8374	4.5	6.0	5.2	2.7	8431	chrX	16222753	intergenic	not near genes	chrX	16226968	intergenic	not near genes	chrX	16231184	intergenic	not near genes	chrX_17_16225001	chrX_16225001	RAL-304_100b
4489	chrX	16340644	16340698	chrX	16349824	16349849	roo	10	9177	1.0	3.5	2.2	3.1	9205	chrX	16340644	intergenic	Dsp1 +	chrX	16345246	intergenic	not near genes	chrX	16349849	intergenic	sl +	chrX_10_16345001	chrX_16345001	RAL-304_100b
4490	chrX	16492620	16492634	chrX	16498222	16498236	mdg3	8	5601	33.5	11.5	22.5	0.3	5616	chrX	16492620	intron	para -	chrX	16495428	intron	para -	chrX	16498236	intron	para -	chrX_8_16495001	chrX_16495001	RAL-304_100b
4491	chrX	16492636	16492674	chrX	16498221	16498276	mdg3	25	5598	15.5	11.0	13.2	1.8	5640	chrX	16492636	intron	para -	chrX	16495456	intron	para -	chrX	16498276	exon	para -	chrX_25_16495001	chrX_16495001	RAL-304_100b
4503	chrX	16936011	16936013	chrX	16936429	16936456	jockey	4	437	9.0	12.0	10.5	0.3	445	chrX	16936011	intron	CG4928 +	chrX	16936234	intron	CG4928 +	chrX	16936456	intron	CG4928 +	chrX_4_16935001	chrX_16935001	RAL-304_100b
4504	chrX	16936014	16936031	chrX	16936423	16936464	jockey	12	434	6.0	11.0	8.5	1.3	450	chrX	16936014	intron	CG4928 +	chrX	16936239	intron	CG4928 +	chrX	16936464	intron	CG4928 +	chrX_12_16935001	chrX_16935001	RAL-304_100b
4508	chrX	17057910	17057963	chrX	17058176	17058229	pogo	9	266	3.0	11.0	7.0	1.1	319	chrX	17057910	intron	CG45002 -	chrX	17058070	intron	CG45002 -	chrX	17058229	intron	CG45002 -	chrX_9_17055001	chrX_17055001	RAL-304_100b
4513	chrX	17195181	17195236	chrX	17200291	17200311	flea	29	5108	8.0	9.5	8.8	3.0	5130	chrX	17195181	3` UTR	baz +	chrX	17197746	3` UTR	baz +	chrX	17200311	3` UTR	baz +	chrX_29_17195001	chrX_17195001	RAL-304_100b
4520	chrX	17431327	17431341	chrX	17431693	17431707	jockey	12	366	35.0	8.5	21.8	0.5	380	chrX	17431327	intron	CG12994 -	chrX	17431517	intron	CG12994 -	chrX	17431707	intron	CG12994 -	chrX_12_17430001	chrX_17430001	RAL-304_100b
4525	chrX	17556922	17556935	chrX	17557446	17557451	mdg1	8	522	38.0	9.5	23.8	0.3	529	chrX	17556922	intron	CG43658 -	chrX	17557186	intron	CG43658 -	chrX	17557451	intron	CG43658 -	chrX_8_17555001	chrX_17555001	RAL-304_100b
4526	chrX	17556942	17556952	chrX	17557444	17557446	mdg1	5	501	32.5	9.0	20.8	0.2	504	chrX	17556942	intron	CG43658 -	chrX	17557194	intron	CG43658 -	chrX	17557446	intron	CG43658 -	chrX_5_17555001	chrX_17555001	RAL-304_100b
4535	chrX	17792936	17792979	chrX	17796253	17796302	flea	34	3322	13.0	18.5	15.8	2.0	3366	chrX	17792936	intron	OdsH +	chrX	17794619	intron	OdsH +	chrX	17796302	intron	OdsH +	chrX_34_17790001	chrX_17790001	RAL-304_100b
4545	chrX	18194042	18194063	chrX	18194602	18194623	BS	12	558	17.5	11.5	14.5	0.8	581	chrX	18194042	intron	Frq2 +	chrX	18194332	intron	Frq2 +	chrX	18194623	intron	Frq2 +	chrX_12_18190001	chrX_18190001	RAL-304_100b
4546	chrX	18194064	18194100	chrX	18194600	18194660	BS	22	555	9.5	10.5	10.0	2.0	596	chrX	18194064	intron	Frq2 +	chrX	18194362	intron	Frq2 +	chrX	18194660	intron	Frq2 +	chrX_22_18190001	chrX_18190001	RAL-304_100b
4550	chrX	18429470	18429521	chrX	18434806	18434855	Transpac	36	5335	8.0	11.5	9.8	3.3	5385	chrX	18429470	intergenic	not near genes	chrX	18432162	intergenic	not near genes	chrX	18434855	intergenic	not near genes	chrX_36_18430001	chrX_18430001	RAL-304_100b
4555	chrX	18555354	18555363	chrX	18556900	18556909	transib2	10	1545	31.5	9.0	20.2	0.5	1555	chrX	18555354	intron	Bx +	chrX	18556132	intron	Bx +	chrX	18556909	intron	Bx +	chrX_10_18555001	chrX_18555001	RAL-304_100b
4556	chrX	18555367	18555411	chrX	18556898	18556958	transib2	27	1537	11.0	8.5	9.8	2.5	1591	chrX	18555367	intron	Bx +	chrX	18556162	intron	Bx +	chrX	18556958	intron	Bx +	chrX_27_18555001	chrX_18555001	RAL-304_100b
4568	chrX	18957047	18957102	chrX	18965735	18965765	roo	24	8683	3.5	8.0	5.8	3.5	8718	chrX	18957047	intron	CG43759 +	chrX	18961406	intron	CG43759 +	chrX	18965765	intron	CG43759 +	chrX_24_18960001	chrX_18960001	RAL-304_100b
4570	chrX	19060386	19060403	chrX	19065195	19065212	Doc	8	4809	22.5	21.0	21.8	0.4	4826	chrX	19060386	intron	CG14190 +	chrX	19062799	intron	CG14190 +	chrX	19065212	intron	CG14190 +	chrX_8_19060001	chrX_19060001	RAL-304_100b
4571	chrX	19060406	19060439	chrX	19065194	19065236	Doc	22	4804	11.0	20.5	15.8	1.3	4830	chrX	19060406	intron	CG14190 +	chrX	19062821	intron	CG14190 +	chrX	19065236	intron	CG14190 +	chrX_22_19060001	chrX_19060001	RAL-304_100b
4577	chrX	19136527	19136584	chrX	19143472	19143484	412	40	6938	13.0	7.0	10.0	3.6	6957	chrX	19136527	intergenic	not near genes	chrX	19140006	intergenic	not near genes	chrX	19143484	3` UTR	RhoGAP18B -	chrX_40_19140001	chrX_19140001	RAL-304_100b
4582	chrX	19380134	19380145	chrX	19380400	19380401	pogo	7	263	28.0	9.5	18.8	0.4	267	chrX	19380134	intron	kek5 +	chrX	19380268	intron	kek5 +	chrX	19380401	intron	kek5 +	chrX_7_19380001	chrX_19380001	RAL-304_100b
4583	chrX	19380146	19380185	chrX	19380397	19380441	pogo	21	263	13.0	7.5	10.2	1.9	295	chrX	19380146	intron	kek5 +	chrX	19380294	intron	kek5 +	chrX	19380441	intron	kek5 +	chrX_21_19380001	chrX_19380001	RAL-304_100b
4587	chrX	19472112	19472135	chrX	19472698	19472728	jockey	11	588	21.5	14.5	18.0	0.6	616	chrX	19472112	intergenic	kek5 +	chrX	19472420	intergenic	not near genes	chrX	19472728	intergenic	not near genes	chrX_11_19470001	chrX_19470001	RAL-304_100b
4588	chrX	19472139	19472156	chrX	19472693	19472744	jockey	16	570	13.5	13.0	13.2	1.1	605	chrX	19472139	intergenic	kek5 +	chrX	19472442	intergenic	not near genes	chrX	19472744	intergenic	not near genes	chrX_16_19470001	chrX_19470001	RAL-304_100b
4598	chrX	12946233	12946235	chrX	19741473	19741476	roo	4	6795240	38.5	49.5	44.0	0.1	6795243	chrX	12946233	3` UTR	fne +	chrX	16343854	intergenic	not near genes	chrX	19741476	intron,3` UTR	CoVIb -,CG18809 -	chrX_4_16340001	chrX_16340001	RAL-304_100b
4604	chrX	19797321	19797340	chrX	19804661	19804678	Stalker4	12	7337	39.0	11.0	25.0	0.5	7357	chrX	19797321	intergenic	not near genes	chrX	19801000	intergenic	not near genes	chrX	19804678	intergenic	not near genes	chrX_12_19800001	chrX_19800001	RAL-304_100b
4605	chrX	19813212	19813226	chrX	19816619	19816620	Gypsy12A_LTR	4	3402	23.5	65.5	44.5	0.1	3408	chrX	19813212	exon	skpD +	chrX	19814916	intergenic	not near genes	chrX	19816620	3` UTR	skpC +	chrX_4_19810001	chrX_19810001	RAL-304_100b
4606	chrX	19813304	19813317	chrX	19816608	19816610	Gypsy12A_LTR	4	3296	9.5	68.5	39.0	0.1	3306	chrX	19813304	3` UTR	skpD +	chrX	19814957	intergenic	not near genes	chrX	19816610	exon	skpC +	chrX_4_19810001	chrX_19810001	RAL-304_100b
4631	chrX	20377325	20377327	chrX	20378817	20378819	hobo	4	1492	27.5	34.0	30.8	0.1	1494	chrX	20377325	intergenic	not near genes	chrX	20378072	intergenic	not near genes	chrX	20378819	intergenic	not near genes	chrX_4_20375001	chrX_20375001	RAL-304_100b
4632	chrX	20377331	20377348	chrX	20378806	20378820	hobo	13	1487	16.5	30.5	23.5	0.5	1489	chrX	20377331	intergenic	not near genes	chrX	20378076	intergenic	not near genes	chrX	20378820	intergenic	not near genes	chrX_13_20375001	chrX_20375001	RAL-304_100b
4640	chrX	20504102	20504158	chrX	20505648	20505689	transib2	45	1542	12.0	16.0	14.0	3.0	1587	chrX	20504102	intron	RhoGAP19D -	chrX	20504896	intron	RhoGAP19D -	chrX	20505689	intron	RhoGAP19D -	chrX_45_20500001	chrX_20500001	RAL-304_100b
4656	chrX	20836700	20836758	chrX	20844327	20844378	roo	32	7626	4.5	3.5	4.0	6.4	7678	chrX	20836700	intron	shakB -	chrX	20840539	intron	shakB -	chrX	20844378	intron	shakB -	chrX_32_20840001	chrX_20840001	RAL-304_100b
4661	chrX	20940700	20940708	chrX	20942194	20942202	hobo	7	1494	38.0	8.0	23.0	0.3	1502	chrX	20940700	intergenic	not near genes	chrX	20941451	intergenic	not near genes	chrX	20942202	intergenic	not near genes	chrX_7_20940001	chrX_20940001	RAL-304_100b
4662	chrX	20940709	20940746	chrX	20942187	20942218	hobo	27	1491	22.5	6.0	14.2	1.8	1509	chrX	20940709	intergenic	not near genes	chrX	20941464	intergenic	not near genes	chrX	20942218	intergenic	not near genes	chrX_27_20940001	chrX_20940001	RAL-304_100b
4685	chrX	21458666	21458726	chrX	21464127	21464187	Ivk	30	5459	6.0	6.5	6.2	4.2	5521	chrX	21458666	intergenic	not near genes	chrX	21461426	intergenic	not near genes	chrX	21464187	intergenic	not near genes	chrX_30_21460001	chrX_21460001	RAL-304_100b
4687	chrX	21474382	21474394	chrX	21474773	21474785	1731	15	391	35.5	11.0	23.2	0.6	403	chrX	21474382	intergenic	not near genes	chrX	21474584	intergenic	not near genes	chrX	21474785	intergenic	not near genes	chrX_15_21470001	chrX_21470001	RAL-304_100b
4688	chrX	21474396	21474435	chrX	21474772	21474826	1731	31	386	13.0	10.5	11.8	2.4	430	chrX	21474396	intergenic	not near genes	chrX	21474611	intergenic	not near genes	chrX	21474826	intergenic	not near genes	chrX_31_21470001	chrX_21470001	RAL-304_100b
4697	chrX	21595550	21595561	chrX	21598647	21598659	micropia	4	3096	8.0	24.0	16.0	0.2	3109	chrX	21595550	intergenic	not near genes	chrX	21597104	intergenic	not near genes	chrX	21598659	intergenic	not near genes	chrX_4_21595001	chrX_21595001	RAL-304_100b
4704	chrX	22522613	22522638	chrX	22525458	22525473	NOF	15	2843	14.5	5.5	10.0	1.4	2860	chrX	22522613	intron	CG17600 +	chrX	22524043	intron	CG17600 +	chrX	22525473	intron	CG17600 +	chrX_15_22520001	chrX_22520001	RAL-304_100b
4705	chrX	22564562	22564578	chrX	22575109	22575141	jockey	19	10550	33.5	22.5	28.0	0.7	10579	chrX	22564562	intergenic	not near genes	chrX	22569852	intergenic	not near genes	chrX	22575141	intergenic	not near genes	chrX_19_22565001	chrX_22565001	RAL-304_100b
4711	chrX	22697476	22697480	chrX	22701798	22701802	Juan	4	4322	31.0	16.0	23.5	0.2	4326	chrX	22697476	intron	CR44997 +	chrX	22699639	intron	CR44997 +	chrX	22701802	intron	CR44997 +	chrX_4_22695001	chrX_22695001	RAL-304_100b
4712	chrX	22697481	22697499	chrX	22701797	22701821	Juan	15	4320	26.0	15.0	20.5	0.7	4340	chrX	22697481	intron	CR44997 +	chrX	22699651	intron	CR44997 +	chrX	22701821	intron	CR44997 +	chrX_15_22695001	chrX_22695001	RAL-304_100b
4713	chrX	22697502	22697515	chrX	22701786	22701837	Juan	12	4317	15.5	9.5	12.5	0.9	4335	chrX	22697502	intron	CR44997 +	chrX	22699670	intron	CR44997 +	chrX	22701837	intron	CR44997 +	chrX_12_22695001	chrX_22695001	RAL-304_100b
4714	chrX	22771483	22771489	chrX	22774798	22774805	297	5	3316	23.0	13.0	18.0	0.3	3322	chrX	22771483	intron	CR44997 +	chrX	22773144	intron	CR44997 +	chrX	22774805	intron	CR44997 +	chrX_5_22770001	chrX_22770001	RAL-304_100b
4715	chrX	22771490	22771539	chrX	22774796	22774818	297	24	3306	11.5	13.0	12.2	1.8	3328	chrX	22771490	intron	CR44997 +	chrX	22773154	intron	CR44997 +	chrX	22774818	intron	CR44997 +	chrX_24_22770001	chrX_22770001	RAL-304_100b
4719	chrX	22811971	22811978	chrX	22816768	22816775	F-element	10	4796	30.0	13.5	21.8	0.4	4804	chrX	22811971	intergenic	CG12446 -	chrX	22814373	intergenic	not near genes	chrX	22816775	intergenic	not near genes	chrX_10_22810001	chrX_22810001	RAL-304_100b
4720	chrX	22811980	22812001	chrX	22816765	22816798	F-element	18	4794	18.5	13.0	15.8	1.1	4818	chrX	22811980	intergenic	CG12446 -	chrX	22814389	intergenic	not near genes	chrX	22816798	intergenic	not near genes	chrX_18_22810001	chrX_22810001	RAL-304_100b
4730	chrX	22987080	22987136	chrX	22989764	22989780	Burdock	28	2676	3.0	7.0	5.0	4.7	2700	chrX	22987080	intron,intron	stnA -,stnB -	chrX	22988430	intron,intron	stnA -,stnB -	chrX	22989780	intron,intron	stnA -,stnB -	chrX_28_22985001	chrX_22985001	RAL-304_100b
4731	chrX	22996288	22996337	chrX	23003547	23003596	roo	31	7257	10.0	11.0	10.5	2.7	7308	chrX	22996288	intron,intron	stnA -,stnB -	chrX	22999942	intron,intron	stnA -,stnB -	chrX	23003596	intron,intron	stnA -,stnB -	chrX_31_22995001	chrX_22995001	RAL-304_100b