SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 47440 47481 chr2L 52570 52610 jockey 24 5129 28.5 20.5 24.5 0.9 5170 chr2L 47440 intron Cda5 - chr2L 50025 intron Cda5 - chr2L 52610 intron Cda5 - chr2L_24_50001 chr2L_50001 RAL-304_100b 2 chr2L 325118 325124 chr2L 325220 325226 4 102 43.5 34.0 38.8 0.1 108 chr2L 325118 intron Plc21C + chr2L 325172 intron Plc21C + chr2L 325226 intron Plc21C + chr2L_4_325001 chr2L_325001 RAL-304_100b 3 chr2L 325128 325154 chr2L 325208 325228 24 93 31.5 28.0 29.8 0.8 100 chr2L 325128 intron Plc21C + chr2L 325178 intron Plc21C + chr2L 325228 intron Plc21C + chr2L_24_325001 chr2L_325001 RAL-304_100b 4 chr2L 347860 347918 chr2L 355385 355443 blood 36 7523 7.5 7.5 7.5 4.2 7583 chr2L 347860 3` UTR Plc21C + chr2L 351652 intron Plc21C + chr2L 355443 3` UTR Plc21C + chr2L_36_350001 chr2L_350001 RAL-304_100b 5 chr2L 371419 371455 chr2L 371523 371559 17 103 11.0 14.5 12.8 1.2 140 chr2L 371419 intergenic not near genes chr2L 371489 intergenic not near genes chr2L 371559 intergenic not near genes chr2L_17_370001 chr2L_370001 RAL-304_100b 6 chr2L 467338 467362 chr2L 467462 467486 18 123 22.5 25.5 24.0 0.7 148 chr2L 467338 intron CG4297 - chr2L 467412 intron CG4297 - chr2L 467486 intron CG4297 - chr2L_18_465001 chr2L_465001 RAL-304_100b 7 chr2L 549210 549217 chr2L 549483 549490 4 273 119.5 121.5 120.5 0.0 280 chr2L 549210 intron Ets21C - chr2L 549350 intron Ets21C - chr2L 549490 intron Ets21C - chr2L_4_545001 chr2L_545001 RAL-304_100b 8 chr2L 549199 549242 chr2L 549493 549525 28 274 125.5 118.5 122.0 0.2 326 chr2L 549199 intron Ets21C - chr2L 549362 intron Ets21C - chr2L 549525 intron Ets21C - chr2L_28_545001 chr2L_545001 RAL-304_100b 9 chr2L 597171 597195 chr2L 597279 597314 16 117 83.0 90.5 86.8 0.2 143 chr2L 597171 intergenic not near genes chr2L 597242 intergenic not near genes chr2L 597314 intergenic not near genes chr2L_16_595001 chr2L_595001 RAL-304_100b 10 chr2L 628469 628525 chr2L 628618 628674 55 145 13.0 14.0 13.5 3.8 205 chr2L 628469 intergenic CR45369 +,CG2839 + chr2L 628572 intergenic CR45369 +,CG2839 + chr2L 628674 intergenic CR45369 +,CG2839 + chr2L_55_625001 chr2L_625001 RAL-304_100b 11 chr2L 630299 630327 chr2L 630401 630444 28 114 0.0 7.5 3.8 5.8 145 chr2L 630299 intergenic not near genes chr2L 630372 intergenic not near genes chr2L 630444 intergenic not near genes chr2L_28_630001 chr2L_630001 RAL-304_100b 12 chr2L 632689 632739 chr2L 632785 632829 57 91 17.5 16.5 17.0 3.2 140 chr2L 632689 intergenic not near genes chr2L 632759 intergenic not near genes chr2L 632829 intergenic not near genes chr2L_57_630001 chr2L_630001 RAL-304_100b 13 chr2L 668408 668464 chr2L 668513 668568 42 103 12.0 9.5 10.8 3.6 160 chr2L 668408 intron ds - chr2L 668488 intron ds - chr2L 668568 intron ds - chr2L_42_665001 chr2L_665001 RAL-304_100b 14 chr2L 686917 686922 chr2L 695975 695987 roo 8 9062 35.0 19.5 27.2 0.3 9070 chr2L 686917 intron ds - chr2L 691452 intron ds - chr2L 695987 intron ds - chr2L_8_690001 chr2L_690001 RAL-304_100b 15 chr2L 686923 686952 chr2L 695969 695992 roo 27 9059 13.5 18.0 15.8 1.6 9069 chr2L 686923 intron ds - chr2L 691458 intron ds - chr2L 695992 intron ds - chr2L_27_690001 chr2L_690001 RAL-304_100b 16 chr2L 770447 770493 chr2L 772246 772289 Bari1 46 1798 19.5 21.0 20.2 2.2 1842 chr2L 770447 intergenic not near genes chr2L 771368 intergenic not near genes chr2L 772289 intergenic CR44614 + chr2L_46_770001 chr2L_770001 RAL-304_100b 17 chr2L 798858 798902 chr2L 799192 799236 39 332 15.5 17.5 16.5 2.2 378 chr2L 798858 intergenic not near genes chr2L 799047 intergenic not near genes chr2L 799236 intergenic not near genes chr2L_39_795001 chr2L_795001 RAL-304_100b 18 chr2L 849446 849481 chr2L 849562 849597 24 109 21.0 13.5 17.2 1.3 151 chr2L 849446 intron drongo - chr2L 849522 intron drongo - chr2L 849597 intron drongo - chr2L_24_845001 chr2L_845001 RAL-304_100b 19 chr2L 877819 877831 chr2L 877924 877937 13 106 53.0 20.0 36.5 0.3 118 chr2L 877819 3` UTR,exon CG15824 -,ninaA + chr2L 877878 3` UTR,intron CG15824 -,ninaA + chr2L 877937 3` UTR,intron CG15824 -,ninaA + chr2L_13_875001 chr2L_875001 RAL-304_100b 20 chr2L 877832 877878 chr2L 877921 877976 36 100 21.5 19.0 20.2 1.7 144 chr2L 877832 3` UTR,exon CG15824 -,ninaA + chr2L 877904 3` UTR,intron CG15824 -,ninaA + chr2L 877976 3` UTR,exon CG15824 -,ninaA + chr2L_36_875001 chr2L_875001 RAL-304_100b 21 chr2L 936573 936593 chr2L 936672 936708 14 112 6.5 4.0 5.2 2.3 135 chr2L 936573 intron CG4341 + chr2L 936640 intron CG4341 + chr2L 936708 intron CG4341 + chr2L_14_935001 chr2L_935001 RAL-304_100b 22 chr2L 941722 941743 chr2L 941874 941875 16 148 28.0 19.5 23.8 0.6 153 chr2L 941722 intron CG4341 + chr2L 941798 intron CG4341 + chr2L 941875 intron CG4341 + chr2L_16_940001 chr2L_940001 RAL-304_100b 23 chr2L 941744 941779 chr2L 941872 941879 34 136 10.0 18.5 14.2 2.2 135 chr2L 941744 intron CG4341 + chr2L 941812 intron CG4341 + chr2L 941879 intron CG4341 + chr2L_34_940001 chr2L_940001 RAL-304_100b 24 chr2L 955989 955993 chr2L 956090 956114 9 111 0.0 40.0 20.0 0.4 125 chr2L 955989 intron CG4341 + chr2L 956052 intron CG4341 + chr2L 956114 intron CG4341 + chr2L_9_955001 chr2L_955001 RAL-304_100b 25 chr2L 971890 971941 chr2L 972001 972057 38 106 15.5 13.5 14.5 2.5 167 chr2L 971890 intergenic not near genes chr2L 971974 intergenic not near genes chr2L 972057 intergenic not near genes chr2L_38_970001 chr2L_970001 RAL-304_100b 26 chr2L 976853 976913 chr2L 984514 984574 roo 37 7657 13.0 13.5 13.2 2.6 7721 chr2L 976853 intergenic not near genes chr2L 980714 intergenic not near genes chr2L 984574 intergenic not near genes chr2L_37_980001 chr2L_980001 RAL-304_100b 27 chr2L 996698 996749 chr2L 1005818 1005869 roo 34 9119 10.0 18.5 14.2 2.2 9171 chr2L 996698 intergenic not near genes chr2L 1001284 intergenic not near genes chr2L 1005869 intergenic not near genes chr2L_34_1000001 chr2L_1000001 RAL-304_100b 28 chr2L 1025096 1025113 chr2L 1025201 1025218 8 105 34.0 16.5 25.2 0.3 122 chr2L 1025096 intron IA-2 - chr2L 1025157 intron IA-2 - chr2L 1025218 intron IA-2 - chr2L_8_1025001 chr2L_1025001 RAL-304_100b 29 chr2L 1025116 1025120 chr2L 1025199 1025225 8 96 28.5 15.5 22.0 0.3 109 chr2L 1025116 intron IA-2 - chr2L 1025170 intron IA-2 - chr2L 1025225 intron IA-2 - chr2L_8_1025001 chr2L_1025001 RAL-304_100b 30 chr2L 1026171 1026179 chr2L 1026272 1026280 6 101 25.0 10.0 17.5 0.3 109 chr2L 1026171 intron,3` UTR IA-2 -,CG4375 - chr2L 1026226 intron,3` UTR IA-2 -,CG4375 - chr2L 1026280 intron,exon IA-2 -,CG4375 - chr2L_6_1025001 chr2L_1025001 RAL-304_100b 31 chr2L 1028816 1028854 chr2L 1028941 1028963 23 112 24.0 7.0 15.5 1.4 147 chr2L 1028816 intron IA-2 - chr2L 1028890 intron IA-2 - chr2L 1028963 intron IA-2 - chr2L_23_1025001 chr2L_1025001 RAL-304_100b 32 chr2L 1028857 1028874 chr2L 1028940 1028974 27 110 13.0 6.5 9.8 2.5 117 chr2L 1028857 intron IA-2 - chr2L 1028916 intron IA-2 - chr2L 1028974 intron IA-2 - chr2L_27_1025001 chr2L_1025001 RAL-304_100b 33 chr2L 1035535 1035541 chr2L 1035637 1035643 6 102 26.5 15.0 20.8 0.3 108 chr2L 1035535 intron IA-2 - chr2L 1035589 intron IA-2 - chr2L 1035643 intron IA-2 - chr2L_6_1035001 chr2L_1035001 RAL-304_100b 34 chr2L 1035542 1035594 chr2L 1035634 1035696 53 97 14.0 14.0 14.0 3.5 154 chr2L 1035542 intron IA-2 - chr2L 1035619 intron IA-2 - chr2L 1035696 intron IA-2 - chr2L_53_1035001 chr2L_1035001 RAL-304_100b 35 chr2L 1042581 1042595 chr2L 1042697 1042711 13 115 1.5 0.0 0.8 7.2 130 chr2L 1042581 intron IA-2 - chr2L 1042646 intron IA-2 - chr2L 1042711 intron IA-2 - chr2L_13_1040001 chr2L_1040001 RAL-304_100b 36 chr2L 1074035 1074089 chr2L 1074140 1074194 45 100 16.0 14.5 15.2 2.8 159 chr2L 1074035 intron S - chr2L 1074114 intron S - chr2L 1074194 intron S - chr2L_45_1070001 chr2L_1070001 RAL-304_100b 37 chr2L 1156833 1156893 chr2L 1156963 1157023 31 126 12.5 14.5 13.5 2.1 190 chr2L 1156833 intron capt - chr2L 1156928 intron capt - chr2L 1157023 intron capt - chr2L_31_1155001 chr2L_1155001 RAL-304_100b 38 chr2L 1220102 1220162 chr2L 1227593 1227653 blood 40 7490 10.5 7.0 8.8 4.1 7551 chr2L 1220102 intron CG42329 + chr2L 1223878 intron CG42329 + chr2L 1227653 intron CG42329 + chr2L_40_1220001 chr2L_1220001 RAL-304_100b 39 chr2L 1261229 1261237 chr2L 1261335 1261343 8 105 0.0 14.0 7.0 1.0 114 chr2L 1261229 intron robo3 + chr2L 1261286 intron robo3 + chr2L 1261343 intron robo3 + chr2L_8_1260001 chr2L_1260001 RAL-304_100b 40 chr2L 1261238 1261245 chr2L 1261332 1261336 4 99 0.0 13.5 6.8 0.5 98 chr2L 1261238 intron robo3 + chr2L 1261287 intron robo3 + chr2L 1261336 intron robo3 + chr2L_4_1260001 chr2L_1260001 RAL-304_100b 41 chr2L 1301748 1301781 chr2L 1302310 1302345 gypsy 5 562 0.0 16.0 8.0 0.6 597 chr2L 1301748 intergenic not near genes chr2L 1302046 intergenic not near genes chr2L 1302345 intergenic not near genes chr2L_5_1300001 chr2L_1300001 RAL-304_100b 42 chr2L 1321998 1322053 chr2L 1322112 1322162 33 101 9.0 13.0 11.0 2.8 164 chr2L 1321998 intergenic not near genes chr2L 1322080 intergenic not near genes chr2L 1322162 intergenic not near genes chr2L_33_1320001 chr2L_1320001 RAL-304_100b 43 chr2L 1336912 1336956 chr2L 1337180 1337224 49 265 13.0 17.5 15.2 3.0 312 chr2L 1336912 intergenic not near genes chr2L 1337068 intergenic not near genes chr2L 1337224 intergenic not near genes chr2L_49_1335001 chr2L_1335001 RAL-304_100b 44 chr2L 1343507 1343559 chr2L 1343725 1343777 30 217 6.5 10.5 8.5 3.2 270 chr2L 1343507 exon CG33922 - chr2L 1343642 intron CG33922 - chr2L 1343777 exon CG33922 - chr2L_30_1340001 chr2L_1340001 RAL-304_100b 45 chr2L 1508022 1508272 chr2L 1508131 1508384 87 104 15.0 19.0 17.0 4.8 362 chr2L 1508022 intergenic not near genes chr2L 1508203 intergenic not near genes chr2L 1508384 intergenic not near genes chr2L_87_1505001 chr2L_1505001 RAL-304_100b 46 chr2L 1536468 1536526 chr2L 1536625 1536663 37 149 0.0 22.0 11.0 3.1 195 chr2L 1536468 intergenic not near genes chr2L 1536566 intergenic not near genes chr2L 1536663 intergenic not near genes chr2L_37_1535001 chr2L_1535001 RAL-304_100b 47 chr2L 1537234 1537252 chr2L 1537490 1537508 9 256 18.5 0.0 9.2 0.9 274 chr2L 1537234 intergenic not near genes chr2L 1537371 intergenic not near genes chr2L 1537508 intergenic not near genes chr2L_9_1535001 chr2L_1535001 RAL-304_100b 48 chr2L 1570667 1570723 chr2L 1573564 1573578 F-element 44 2895 18.0 21.5 19.8 2.1 2911 chr2L 1570667 intron haf + chr2L 1572122 intron haf + chr2L 1573578 intron haf + chr2L_44_1570001 chr2L_1570001 RAL-304_100b 49 chr2L 1577233 1577288 chr2L 1577341 1577390 37 104 15.0 10.0 12.5 2.7 157 chr2L 1577233 intron haf + chr2L 1577312 intron haf + chr2L 1577390 intron haf + chr2L_37_1575001 chr2L_1575001 RAL-304_100b 50 chr2L 1611178 1611203 chr2L 1611292 1611317 10 112 17.0 0.5 8.8 1.0 139 chr2L 1611178 intergenic CG31935 -,CG14352 + chr2L 1611248 intergenic CG31935 -,CG14352 + chr2L 1611317 intergenic CG14352 +,CG31935 - chr2L_10_1610001 chr2L_1610001 RAL-304_100b 51 chr2L 1611204 1611210 chr2L 1611288 1611324 9 111 13.0 0.5 6.8 1.2 120 chr2L 1611204 intergenic CG31935 -,CG14352 + chr2L 1611264 intergenic CG31935 -,CG14352 + chr2L 1611324 intergenic CG14352 +,CG31935 - chr2L_9_1610001 chr2L_1610001 RAL-304_100b 52 chr2L 1615374 1615392 chr2L 1615481 1615499 14 106 0.5 29.0 14.8 0.9 125 chr2L 1615374 intergenic not near genes chr2L 1615436 intergenic not near genes chr2L 1615499 intergenic not near genes chr2L_14_1615001 chr2L_1615001 RAL-304_100b 53 chr2L 1615393 1615415 chr2L 1615480 1615522 27 102 0.5 28.0 14.2 1.8 129 chr2L 1615393 intergenic not near genes chr2L 1615458 intergenic not near genes chr2L 1615522 intergenic not near genes chr2L_27_1615001 chr2L_1615001 RAL-304_100b 54 chr2L 1634737 1634763 chr2L 1634854 1634864 20 114 27.5 18.5 23.0 0.8 127 chr2L 1634737 intergenic not near genes chr2L 1634800 intergenic not near genes chr2L 1634864 intergenic not near genes chr2L_20_1630001 chr2L_1630001 RAL-304_100b 55 chr2L 1678933 1679007 chr2L 1686441 1686452 blood 23 7495 0.5 17.5 9.0 2.3 7519 chr2L 1678933 intron chinmo + chr2L 1682692 intron chinmo + chr2L 1686452 intron chinmo + chr2L_23_1680001 chr2L_1680001 RAL-304_100b 56 chr2L 1711344 1711387 chr2L 1711678 1711736 mdg3 66 342 22.0 14.0 18.0 3.5 392 chr2L 1711344 3` UTR,3` UTR mRpL48 +,frtz - chr2L 1711540 3` UTR frtz - chr2L 1711736 3` UTR frtz - chr2L_66_1710001 chr2L_1710001 RAL-304_100b 57 chr2L 1744785 1744788 chr2L 1744888 1744891 5 103 37.5 19.5 28.5 0.2 106 chr2L 1744785 intron CG17646 + chr2L 1744838 intron CG17646 + chr2L 1744891 intron CG17646 + chr2L_5_1740001 chr2L_1740001 RAL-304_100b 58 chr2L 1744789 1744836 chr2L 1744887 1744907 57 94 11.0 18.5 14.8 3.6 118 chr2L 1744789 intron CG17646 + chr2L 1744848 intron CG17646 + chr2L 1744907 intron CG17646 + chr2L_57_1740001 chr2L_1740001 RAL-304_100b 59 chr2L 1763091 1763113 chr2L 1763199 1763210 18 107 29.5 22.5 26.0 0.7 119 chr2L 1763091 intergenic not near genes chr2L 1763150 intergenic not near genes chr2L 1763210 intergenic not near genes chr2L_18_1760001 chr2L_1760001 RAL-304_100b 60 chr2L 1781099 1781129 chr2L 1781274 1781291 20 175 12.0 3.5 7.8 2.3 192 chr2L 1781099 intergenic not near genes chr2L 1781195 intergenic not near genes chr2L 1781291 intergenic not near genes chr2L_20_1780001 chr2L_1780001 RAL-304_100b 61 chr2L 1844670 1844686 chr2L 1844777 1844793 6 106 34.0 6.5 20.2 0.3 123 chr2L 1844670 exon wry + chr2L 1844732 intron wry + chr2L 1844793 intron wry + chr2L_6_1840001 chr2L_1840001 RAL-304_100b 62 chr2L 1844692 1844704 chr2L 1844775 1844775 10 88 24.0 5.5 14.8 0.6 83 chr2L 1844692 exon wry + chr2L 1844734 intron wry + chr2L 1844775 intron wry + chr2L_10_1840001 chr2L_1840001 RAL-304_100b 63 chr2L 1887915 1887929 chr2L 1888124 1888138 11 208 47.5 13.5 30.5 0.3 223 chr2L 1887915 intron CG7337 + chr2L 1888026 intron CG7337 + chr2L 1888138 intron CG7337 + chr2L_11_1885001 chr2L_1885001 RAL-304_100b 64 chr2L 1887930 1887969 chr2L 1888123 1888178 42 194 19.0 13.5 16.2 2.4 248 chr2L 1887930 intron CG7337 + chr2L 1888054 intron CG7337 + chr2L 1888178 intron CG7337 + chr2L_42_1885001 chr2L_1885001 RAL-304_100b 65 chr2L 1944166 1944217 chr2L 1944275 1944321 53 107 0.5 16.0 8.2 5.8 155 chr2L 1944166 intergenic CG7337 + chr2L 1944244 intergenic CG7337 + chr2L 1944321 intergenic not near genes chr2L_53_1940001 chr2L_1940001 RAL-304_100b 66 chr2L 2001765 2001817 chr2L 2001861 2001907 25 98 8.0 16.0 12.0 1.9 142 chr2L 2001765 intron,5` UTR CG33543 -,CR43464 + chr2L 2001836 intron,5` UTR CG33543 -,CR43464 + chr2L 2001907 intron,5` UTR CG33543 -,CR43464 + chr2L_25_2000001 chr2L_2000001 RAL-304_100b 67 chr2L 2016102 2016161 chr2L 2016207 2016261 23 101 1.5 5.5 3.5 5.1 159 chr2L 2016102 intron CG4238 + chr2L 2016182 intron CG4238 + chr2L 2016261 intron CG4238 + chr2L_23_2015001 chr2L_2015001 RAL-304_100b 68 chr2L 2073330 2073342 chr2L 2073432 2073450 7 107 35.0 46.0 40.5 0.2 120 chr2L 2073330 intron dpr3 - chr2L 2073390 intron dpr3 - chr2L 2073450 intron dpr3 - chr2L_7_2070001 chr2L_2070001 RAL-304_100b 69 chr2L 2100375 2100406 chr2L 2109526 2109552 roo 37 9163 20.5 25.0 22.8 1.6 9177 chr2L 2100375 intron dpr3 - chr2L 2104964 intron dpr3 - chr2L 2109552 intron dpr3 - chr2L_37_2100001 chr2L_2100001 RAL-304_100b 70 chr2L 2112095 2112100 chr2L 2119774 2119787 opus 5 7679 46.0 21.0 33.5 0.1 7692 chr2L 2112095 intergenic not near genes chr2L 2115941 intergenic not near genes chr2L 2119787 intergenic not near genes chr2L_5_2115001 chr2L_2115001 RAL-304_100b 71 chr2L 2112101 2112145 chr2L 2119773 2119796 opus 33 7664 14.5 19.5 17.0 1.8 7695 chr2L 2112101 intergenic not near genes chr2L 2115948 intergenic not near genes chr2L 2119796 intergenic not near genes chr2L_33_2115001 chr2L_2115001 RAL-304_100b 72 chr2L 2145725 2145783 chr2L 2145836 2145856 38 108 7.0 15.5 11.2 3.1 131 chr2L 2145725 3` UTR CG11723 - chr2L 2145790 3` UTR CG11723 - chr2L 2145856 3` UTR CG11723 - chr2L_38_2145001 chr2L_2145001 RAL-304_100b 73 chr2L 2260781 2260839 chr2L 2260891 2260919 63 106 11.5 26.0 18.8 3.2 138 chr2L 2260781 intergenic not near genes chr2L 2260850 intergenic not near genes chr2L 2260919 intergenic not near genes chr2L_63_2260001 chr2L_2260001 RAL-304_100b 74 chr2L 2262289 2262305 chr2L 2262386 2262407 12 100 39.0 2.0 20.5 0.6 118 chr2L 2262289 intergenic not near genes chr2L 2262348 intergenic not near genes chr2L 2262407 intergenic not near genes chr2L_12_2260001 chr2L_2260001 RAL-304_100b 75 chr2L 2262308 2262317 chr2L 2262384 2262415 7 92 31.0 3.5 17.2 0.4 107 chr2L 2262308 intergenic not near genes chr2L 2262362 intergenic not near genes chr2L 2262415 intergenic not near genes chr2L_7_2260001 chr2L_2260001 RAL-304_100b 76 chr2L 2282957 2283015 chr2L 2283142 2283200 45 184 12.0 16.0 14.0 3.0 243 chr2L 2282957 intergenic not near genes chr2L 2283078 intergenic not near genes chr2L 2283200 intergenic not near genes chr2L_45_2280001 chr2L_2280001 RAL-304_100b 77 chr2L 2290555 2290616 chr2L 2290656 2290717 32 97 14.0 15.0 14.5 2.1 162 chr2L 2290555 exon robl22E - chr2L 2290636 5` UTR robl22E - chr2L 2290717 5` UTR robl22E - chr2L_32_2290001 chr2L_2290001 RAL-304_100b 78 chr2L 2294030 2294074 chr2L 2299244 2299295 copia 49 5217 15.0 21.5 18.2 2.6 5265 chr2L 2294030 intergenic not near genes chr2L 2296662 intergenic not near genes chr2L 2299295 intergenic not near genes chr2L_49_2295001 chr2L_2295001 RAL-304_100b 79 chr2L 2317097 2317130 chr2L 2317293 2317326 12 196 64.5 68.5 66.5 0.2 229 chr2L 2317097 intron,intron CG9967 -,eys + chr2L 2317212 intron,intron CG9967 -,eys + chr2L 2317326 intron,intron CG9967 -,eys + chr2L_12_2315001 chr2L_2315001 RAL-304_100b 80 chr2L 2372339 2372404 chr2L 2372450 2372489 24 109 0.0 18.0 9.0 2.4 150 chr2L 2372339 intergenic CG3609 - chr2L 2372414 intergenic CG3609 - chr2L 2372489 3` UTR CG3609 - chr2L_24_2370001 chr2L_2370001 RAL-304_100b 81 chr2L 2392134 2392138 chr2L 2392269 2392273 4 135 29.0 17.0 23.0 0.2 139 chr2L 2392134 intron VGlut + chr2L 2392204 intron VGlut + chr2L 2392273 intron VGlut + chr2L_4_2390001 chr2L_2390001 RAL-304_100b 82 chr2L 2392139 2392185 chr2L 2392268 2392320 19 133 12.5 16.0 14.2 1.2 181 chr2L 2392139 intron VGlut + chr2L 2392230 intron VGlut + chr2L 2392320 intron VGlut + chr2L_19_2390001 chr2L_2390001 RAL-304_100b 83 chr2L 2470642 2470645 chr2L 2470752 2470755 4 110 53.5 15.5 34.5 0.1 113 chr2L 2470642 intergenic not near genes chr2L 2470698 intergenic not near genes chr2L 2470755 intergenic not near genes chr2L_4_2470001 chr2L_2470001 RAL-304_100b 84 chr2L 2470646 2470694 chr2L 2470748 2470789 35 99 22.5 14.5 18.5 1.8 143 chr2L 2470646 intergenic not near genes chr2L 2470718 intergenic not near genes chr2L 2470789 intergenic not near genes chr2L_35_2470001 chr2L_2470001 RAL-304_100b 85 chr2L 2503692 2503742 chr2L 2504496 2504546 42 802 11.0 16.0 13.5 2.9 854 chr2L 2503692 intergenic not near genes chr2L 2504119 intergenic not near genes chr2L 2504546 intergenic not near genes chr2L_42_2500001 chr2L_2500001 RAL-304_100b 86 chr2L 2515992 2516025 chr2L 2516387 2516420 10 385 5.5 8.0 6.8 1.3 428 chr2L 2515992 intergenic not near genes chr2L 2516206 intergenic not near genes chr2L 2516420 intergenic not near genes chr2L_10_2515001 chr2L_2515001 RAL-304_100b 87 chr2L 2525176 2525186 chr2L 2525467 2525477 5 291 35.0 16.5 25.8 0.2 301 chr2L 2525176 intergenic not near genes chr2L 2525326 intergenic not near genes chr2L 2525477 intergenic not near genes chr2L_5_2525001 chr2L_2525001 RAL-304_100b 88 chr2L 2525189 2525230 chr2L 2525466 2525521 39 283 15.5 16.5 16.0 2.3 332 chr2L 2525189 intergenic not near genes chr2L 2525355 intergenic not near genes chr2L 2525521 intergenic not near genes chr2L_39_2525001 chr2L_2525001 RAL-304_100b 89 chr2L 2557205 2557216 chr2L 2557275 2557317 6 96 6.5 12.0 9.2 0.6 112 chr2L 2557205 intergenic not near genes chr2L 2557261 intergenic not near genes chr2L 2557317 intergenic not near genes chr2L_6_2555001 chr2L_2555001 RAL-304_100b 90 chr2L 2565530 2565563 chr2L 2571628 2571661 297 22 6096 13.0 22.0 17.5 1.2 6131 chr2L 2565530 exon Cyp309a2 - chr2L 2568596 intron Cyp309a2 - chr2L 2571661 exon Cyp309a2 - chr2L_22_2565001 chr2L_2565001 RAL-304_100b 91 chr2L 2587789 2587848 chr2L 2587893 2587897 49 96 13.0 16.5 14.8 3.1 108 chr2L 2587789 intergenic not near genes chr2L 2587843 intergenic not near genes chr2L 2587897 intergenic not near genes chr2L_49_2585001 chr2L_2585001 RAL-304_100b 92 chr2L 2618009 2618070 chr2L 2618113 2618168 46 100 14.0 15.0 14.5 3.0 159 chr2L 2618009 intergenic not near genes chr2L 2618088 intergenic not near genes chr2L 2618168 intergenic not near genes chr2L_46_2615001 chr2L_2615001 RAL-304_100b 93 chr2L 2661177 2661220 chr2L 2663035 2663083 I-element 30 1853 16.0 19.0 17.5 1.6 1906 chr2L 2661177 intergenic not near genes chr2L 2662130 intergenic not near genes chr2L 2663083 intergenic not near genes chr2L_30_2660001 chr2L_2660001 RAL-304_100b 94 chr2L 2661221 2661222 chr2L 2663032 2663067 I-element 5 1828 15.5 15.0 15.2 0.3 1846 chr2L 2661221 intergenic not near genes chr2L 2662144 intergenic not near genes chr2L 2663067 intergenic not near genes chr2L_5_2660001 chr2L_2660001 RAL-304_100b 95 chr2L 2661223 2661229 chr2L 2663030 2663072 I-element 31 1837 13.0 14.5 13.8 2.1 1849 chr2L 2661223 intergenic not near genes chr2L 2662148 intergenic not near genes chr2L 2663072 intergenic not near genes chr2L_31_2660001 chr2L_2660001 RAL-304_100b 96 chr2L 2703421 2703443 chr2L 2703530 2703552 18 107 10.0 38.5 24.2 0.7 131 chr2L 2703421 intron CG31690 + chr2L 2703486 intron CG31690 + chr2L 2703552 intron CG31690 + chr2L_18_2700001 chr2L_2700001 RAL-304_100b 97 chr2L 2749021 2749079 chr2L 2749877 2749924 44 852 3.5 8.5 6.0 6.3 903 chr2L 2749021 intron Pgk - chr2L 2749472 intron Pgk - chr2L 2749924 intron Pgk - chr2L_44_2745001 chr2L_2745001 RAL-304_100b 98 chr2L 2772585 2772625 chr2L 2779194 2779232 297 26 6603 17.5 21.0 19.2 1.3 6647 chr2L 2772585 3` UTR Syt1 - chr2L 2775908 intron Syt1 - chr2L 2779232 3` UTR Syt1 - chr2L_26_2775001 chr2L_2775001 RAL-304_100b 99 chr2L 2782886 2782932 chr2L 2782989 2783033 13 102 15.5 0.5 8.0 1.4 147 chr2L 2782886 intron Syt1 - chr2L 2782960 intron Syt1 - chr2L 2783033 intron Syt1 - chr2L_13_2780001 chr2L_2780001 RAL-304_100b 100 chr2L 2800589 2800614 chr2L 2800692 2800707 8 104 11.0 0.0 5.5 1.2 118 chr2L 2800589 intergenic not near genes chr2L 2800648 intergenic not near genes chr2L 2800707 intergenic not near genes chr2L_8_2800001 chr2L_2800001 RAL-304_100b 101 chr2L 2857795 2857833 chr2L 2857896 2857934 19 98 10.0 9.0 9.5 1.8 139 chr2L 2857795 intron CG2991 + chr2L 2857864 intron CG2991 + chr2L 2857934 intron CG2991 + chr2L_19_2855001 chr2L_2855001 RAL-304_100b 102 chr2L 2873413 2873469 chr2L 2873516 2873572 17 100 0.5 10.5 5.5 2.6 159 chr2L 2873413 intron CG31694 - chr2L 2873492 intron CG31694 - chr2L 2873572 intron CG31694 - chr2L_17_2870001 chr2L_2870001 RAL-304_100b 103 chr2L 2933274 2933324 chr2L 2935476 2935496 pogo 45 2198 26.0 16.5 21.2 2.0 2222 chr2L 2933274 intron lilli + chr2L 2934385 intron lilli + chr2L 2935496 intron lilli + chr2L_45_2930001 chr2L_2930001 RAL-304_100b 104 chr2L 3001575 3001634 chr2L 3001683 3001719 45 92 13.5 15.5 14.5 2.9 144 chr2L 3001575 intron CG17265 + chr2L 3001647 intron CG17265 + chr2L 3001719 intron CG17265 + chr2L_45_3000001 chr2L_3000001 RAL-304_100b 105 chr2L 3073008 3073012 chr2L 3078236 3078240 copia 4 5228 49.0 18.5 33.8 0.1 5232 chr2L 3073008 intron toc - chr2L 3075624 intron toc - chr2L 3078240 intron toc - chr2L_4_3075001 chr2L_3075001 RAL-304_100b 106 chr2L 3073013 3073060 chr2L 3078232 3078288 copia 52 5226 18.0 16.5 17.2 2.9 5275 chr2L 3073013 intron toc - chr2L 3075650 intron toc - chr2L 3078288 intron toc - chr2L_52_3075001 chr2L_3075001 RAL-304_100b 107 chr2L 3134928 3134955 chr2L 3135030 3135057 30 100 13.5 22.0 17.8 1.6 129 chr2L 3134928 intron toc - chr2L 3134992 intron toc - chr2L 3135057 intron toc - chr2L_30_3130001 chr2L_3130001 RAL-304_100b 108 chr2L 3192195 3192200 chr2L 3192321 3192336 4 134 32.5 19.5 26.0 0.1 141 chr2L 3192195 exon CG34393 - chr2L 3192266 intron CG34393 - chr2L 3192336 intron CG34393 - chr2L_4_3190001 chr2L_3190001 RAL-304_100b 109 chr2L 3192202 3192241 chr2L 3192318 3192377 41 124 11.5 18.0 14.8 2.6 175 chr2L 3192202 exon CG34393 - chr2L 3192290 intron CG34393 - chr2L 3192377 intron CG34393 - chr2L_41_3190001 chr2L_3190001 RAL-304_100b 110 chr2L 3193808 3193860 chr2L 3193919 3193919 40 109 12.5 14.5 13.5 2.8 111 chr2L 3193808 intron CG34393 - chr2L 3193864 intron CG34393 - chr2L 3193919 intron CG34393 - chr2L_40_3190001 chr2L_3190001 RAL-304_100b 111 chr2L 3202719 3202772 chr2L 3210173 3210222 mdg1 29 7453 5.5 0.0 2.8 7.6 7503 chr2L 3202719 intergenic not near genes chr2L 3206470 intergenic not near genes chr2L 3210222 intergenic CR45336 + chr2L_29_3205001 chr2L_3205001 RAL-304_100b 112 chr2L 3244077 3244094 chr2L 3244183 3244206 10 106 36.0 17.0 26.5 0.4 129 chr2L 3244077 intergenic not near genes chr2L 3244142 intergenic not near genes chr2L 3244206 intergenic not near genes chr2L_10_3240001 chr2L_3240001 RAL-304_100b 113 chr2L 3244095 3244099 chr2L 3244182 3244190 7 91 35.0 17.0 26.0 0.3 95 chr2L 3244095 intergenic not near genes chr2L 3244142 intergenic not near genes chr2L 3244190 intergenic not near genes chr2L_7_3240001 chr2L_3240001 RAL-304_100b 114 chr2L 3244100 3244123 chr2L 3244181 3244200 34 87 15.0 17.0 16.0 2.0 100 chr2L 3244100 intergenic not near genes chr2L 3244150 intergenic not near genes chr2L 3244200 intergenic not near genes chr2L_34_3240001 chr2L_3240001 RAL-304_100b 115 chr2L 3251470 3251526 chr2L 3259059 3259090 springer 28 7589 15.0 11.0 13.0 2.0 7620 chr2L 3251470 intergenic not near genes chr2L 3255280 intergenic not near genes chr2L 3259090 intergenic not near genes chr2L_28_3255001 chr2L_3255001 RAL-304_100b 116 chr2L 3291214 3291269 chr2L 3291318 3291374 39 100 4.5 20.0 12.2 3.0 160 chr2L 3291214 intergenic CG9664 - chr2L 3291294 3` UTR CG9664 - chr2L 3291374 3` UTR CG9664 - chr2L_39_3290001 chr2L_3290001 RAL-304_100b 117 chr2L 3323233 3323256 chr2L 3323365 3323388 15 131 25.5 18.0 21.8 0.7 155 chr2L 3323233 intergenic CG8837 + chr2L 3323310 intergenic CG8837 + chr2L 3323388 intergenic CG8837 + chr2L_15_3320001 chr2L_3320001 RAL-304_100b 118 chr2L 3323257 3323283 chr2L 3323364 3323415 22 127 10.0 18.0 14.0 1.5 158 chr2L 3323257 intergenic CG8837 + chr2L 3323336 intergenic CG8837 + chr2L 3323415 intergenic CG8837 + chr2L_22_3320001 chr2L_3320001 RAL-304_100b 119 chr2L 3366989 3367043 chr2L 3367164 3367218 43 173 9.0 14.5 11.8 3.4 229 chr2L 3366989 intron CG34394 - chr2L 3367104 intron CG34394 - chr2L 3367218 intron CG34394 - chr2L_43_3365001 chr2L_3365001 RAL-304_100b 120 chr2L 3388573 3388626 chr2L 3388839 3388892 pogo 28 264 6.0 10.0 8.0 3.1 319 chr2L 3388573 intergenic CG42460 - chr2L 3388732 intergenic CG42460 - chr2L 3388892 intergenic CG42460 -,CR44791 + chr2L_28_3385001 chr2L_3385001 RAL-304_100b 121 chr2L 3401842 3401859 chr2L 3401959 3401976 10 115 25.5 8.0 16.8 0.6 134 chr2L 3401842 intergenic not near genes chr2L 3401909 intergenic not near genes chr2L 3401976 intergenic not near genes chr2L_10_3400001 chr2L_3400001 RAL-304_100b 122 chr2L 3401860 3401898 chr2L 3401955 3402015 28 112 8.0 7.5 7.8 3.2 155 chr2L 3401860 intergenic not near genes chr2L 3401938 intergenic not near genes chr2L 3402015 intergenic not near genes chr2L_28_3400001 chr2L_3400001 RAL-304_100b 123 chr2L 3444094 3444110 chr2L 3444198 3444209 7 102 15.0 42.5 28.8 0.2 115 chr2L 3444094 intergenic not near genes chr2L 3444152 intergenic not near genes chr2L 3444209 intergenic not near genes chr2L_7_3440001 chr2L_3440001 RAL-304_100b 124 chr2L 3508325 3508375 chr2L 3508428 3508478 44 102 12.0 11.5 11.8 3.4 153 chr2L 3508325 intergenic tim -,CR45299 + chr2L 3508402 intergenic CR45299 +,tim - chr2L 3508478 intergenic CR45299 +,tim - chr2L_44_3505001 chr2L_3505001 RAL-304_100b 125 chr2L 3548563 3548610 chr2L 3548667 3548714 20 103 4.5 10.0 7.2 2.4 151 chr2L 3548563 intergenic drm + chr2L 3548638 intergenic drm + chr2L 3548714 intergenic drm + chr2L_20_3545001 chr2L_3545001 RAL-304_100b 126 chr2L 3556927 3556966 chr2L 3557028 3557051 9 104 0.0 19.5 9.8 0.8 124 chr2L 3556927 intergenic not near genes chr2L 3556989 intergenic not near genes chr2L 3557051 intergenic not near genes chr2L_9_3555001 chr2L_3555001 RAL-304_100b 127 chr2L 3584645 3584653 chr2L 3584747 3584755 6 102 44.0 6.5 25.2 0.2 110 chr2L 3584645 intergenic not near genes chr2L 3584700 intergenic not near genes chr2L 3584755 intergenic not near genes chr2L_6_3580001 chr2L_3580001 RAL-304_100b 128 chr2L 3584655 3584704 chr2L 3584746 3584806 25 94 25.0 6.5 15.8 1.5 151 chr2L 3584655 intergenic not near genes chr2L 3584730 intergenic not near genes chr2L 3584806 intergenic not near genes chr2L_25_3580001 chr2L_3580001 RAL-304_100b 129 chr2L 3587020 3587033 chr2L 3587121 3587134 6 99 36.0 23.5 29.8 0.2 114 chr2L 3587020 intergenic not near genes chr2L 3587077 intergenic not near genes chr2L 3587134 intergenic not near genes chr2L_6_3585001 chr2L_3585001 RAL-304_100b 130 chr2L 3587034 3587074 chr2L 3587116 3587135 53 93 22.5 23.5 23.0 2.2 101 chr2L 3587034 intergenic not near genes chr2L 3587084 intergenic not near genes chr2L 3587135 intergenic not near genes chr2L_53_3585001 chr2L_3585001 RAL-304_100b 131 chr2L 3590147 3590206 chr2L 3590252 3590284 46 102 21.5 13.0 17.2 2.5 137 chr2L 3590147 3` UTR CR43823 - chr2L 3590216 3` UTR CR43823 - chr2L 3590284 3` UTR CR43823 - chr2L_46_3590001 chr2L_3590001 RAL-304_100b 132 chr2L 3611412 3611433 chr2L 3611510 3611517 9 94 23.5 0.5 12.0 0.7 105 chr2L 3611412 intergenic not near genes chr2L 3611464 intergenic not near genes chr2L 3611517 intergenic not near genes chr2L_9_3610001 chr2L_3610001 RAL-304_100b 133 chr2L 3634081 3634133 chr2L 3634188 3634240 47 104 12.0 14.5 13.2 3.3 159 chr2L 3634081 intron for - chr2L 3634160 intron for - chr2L 3634240 exon for - chr2L_47_3630001 chr2L_3630001 RAL-304_100b 134 chr2L 3646787 3646839 chr2L 3646892 3646946 44 104 1.0 12.5 6.8 5.6 159 chr2L 3646787 intron for - chr2L 3646866 intron for - chr2L 3646946 intron for - chr2L_44_3645001 chr2L_3645001 RAL-304_100b 135 chr2L 3649762 3649805 chr2L 3654994 3655007 copia 19 5225 0.0 11.0 5.5 2.9 5245 chr2L 3649762 intron for - chr2L 3652384 intron for - chr2L 3655007 intron for - chr2L_19_3650001 chr2L_3650001 RAL-304_100b 136 chr2L 3729145 3729201 chr2L 3729267 3729324 16 122 4.5 8.0 6.2 2.2 179 chr2L 3729145 3` UTR Shaw + chr2L 3729234 intergenic Shaw + chr2L 3729324 intergenic Shaw + chr2L_16_3725001 chr2L_3725001 RAL-304_100b 137 chr2L 3784791 3784792 chr2L 3785663 3785664 4 872 16.5 29.0 22.8 0.2 873 chr2L 3784791 intergenic CG31960 + chr2L 3785228 exon CG31960 + chr2L 3785664 intergenic CG31960 +,CG31958 + chr2L_4_3785001 chr2L_3785001 RAL-304_100b 138 chr2L 3788384 3788398 chr2L 3788504 3788518 6 120 10.0 10.0 10.0 0.5 134 chr2L 3788384 intron CG3921 + chr2L 3788451 intron CG3921 + chr2L 3788518 intron CG3921 + chr2L_6_3785001 chr2L_3785001 RAL-304_100b 139 chr2L 3819006 3819057 chr2L 3819113 3819149 39 105 20.5 1.0 10.8 3.3 143 chr2L 3819006 intergenic CR44077 + chr2L 3819078 intergenic not near genes chr2L 3819149 intergenic not near genes chr2L_39_3815001 chr2L_3815001 RAL-304_100b 140 chr2L 3820115 3820166 chr2L 3820229 3820280 37 111 14.0 19.0 16.5 2.1 165 chr2L 3820115 intergenic not near genes chr2L 3820198 intergenic not near genes chr2L 3820280 intergenic not near genes chr2L_37_3820001 chr2L_3820001 RAL-304_100b 141 chr2L 3820167 3820172 chr2L 3820227 3820286 5 102 12.5 18.0 15.2 0.3 119 chr2L 3820167 intergenic not near genes chr2L 3820226 intergenic not near genes chr2L 3820286 intergenic not near genes chr2L_5_3820001 chr2L_3820001 RAL-304_100b 142 chr2L 3820418 3820427 chr2L 3820546 3820555 11 128 35.0 9.0 22.0 0.5 137 chr2L 3820418 intergenic not near genes chr2L 3820486 intergenic not near genes chr2L 3820555 intergenic not near genes chr2L_11_3820001 chr2L_3820001 RAL-304_100b 143 chr2L 3820428 3820470 chr2L 3820544 3820593 37 122 17.5 8.5 13.0 2.6 165 chr2L 3820428 intergenic not near genes chr2L 3820510 intergenic not near genes chr2L 3820593 intergenic not near genes chr2L_37_3820001 chr2L_3820001 RAL-304_100b 144 chr2L 3862403 3862412 chr2L 3862512 3862521 5 109 14.0 0.0 7.0 0.6 118 chr2L 3862403 intergenic CG3964 +,CR44078 - chr2L 3862462 intergenic CG3964 +,CR44078 - chr2L 3862521 intergenic CG3964 +,CR44078 - chr2L_5_3860001 chr2L_3860001 RAL-304_100b 145 chr2L 3876231 3876273 chr2L 3876334 3876376 29 102 9.0 8.0 8.5 3.1 145 chr2L 3876231 intron capu - chr2L 3876304 intron capu - chr2L 3876376 intron capu - chr2L_29_3875001 chr2L_3875001 RAL-304_100b 146 chr2L 3884766 3884809 chr2L 3884868 3884911 26 101 10.0 6.0 8.0 2.9 145 chr2L 3884766 intron capu - chr2L 3884838 intron capu - chr2L 3884911 intron capu - chr2L_26_3880001 chr2L_3880001 RAL-304_100b 147 chr2L 3891868 3891924 chr2L 3891978 3892012 35 107 11.5 15.0 13.2 2.5 144 chr2L 3891868 intron capu - chr2L 3891940 intron capu - chr2L 3892012 intron capu - chr2L_35_3890001 chr2L_3890001 RAL-304_100b 148 chr2L 3898243 3898308 chr2L 3898353 3898405 32 105 1.5 10.5 6.0 4.6 162 chr2L 3898243 intron capu - chr2L 3898324 intron capu - chr2L 3898405 intron capu - chr2L_32_3895001 chr2L_3895001 RAL-304_100b 149 chr2L 3936630 3936656 chr2L 3936735 3936761 12 105 8.0 18.5 13.2 0.8 131 chr2L 3936630 intron fred - chr2L 3936696 intron fred - chr2L 3936761 intron fred - chr2L_12_3935001 chr2L_3935001 RAL-304_100b 150 chr2L 3943772 3943823 chr2L 3943888 3943939 39 115 10.5 12.5 11.5 3.1 167 chr2L 3943772 intron fred - chr2L 3943856 intron fred - chr2L 3943939 intron fred - chr2L_39_3940001 chr2L_3940001 RAL-304_100b 151 chr2L 4025324 4025341 chr2L 4025432 4025432 5 104 10.5 0.0 5.2 0.8 108 chr2L 4025324 intergenic not near genes chr2L 4025378 intergenic not near genes chr2L 4025432 intergenic not near genes chr2L_5_4025001 chr2L_4025001 RAL-304_100b 152 chr2L 4037777 4037809 chr2L 4037890 4037921 21 110 11.5 11.0 11.2 1.7 144 chr2L 4037777 intron ed + chr2L 4037849 intron ed + chr2L 4037921 intron ed + chr2L_21_4035001 chr2L_4035001 RAL-304_100b 153 chr2L 4039007 4039014 chr2L 4039108 4039115 4 101 7.0 13.0 10.0 0.4 108 chr2L 4039007 intron ed + chr2L 4039061 intron ed + chr2L 4039115 intron ed + chr2L_4_4035001 chr2L_4035001 RAL-304_100b 154 chr2L 4062984 4063005 chr2L 4063102 4063123 8 116 56.0 36.0 46.0 0.2 139 chr2L 4062984 intron ed + chr2L 4063054 intron ed + chr2L 4063123 intron ed + chr2L_8_4060001 chr2L_4060001 RAL-304_100b 155 chr2L 4066018 4066062 chr2L 4068868 4068873 Juan 30 2848 20.5 26.5 23.5 1.2 2855 chr2L 4066018 intron ed + chr2L 4067446 intron ed + chr2L 4068873 intron ed + chr2L_30_4065001 chr2L_4065001 RAL-304_100b 156 chr2L 4082864 4082876 chr2L 4082993 4083005 12 128 30.0 14.5 22.2 0.5 141 chr2L 4082864 intron ed + chr2L 4082934 intron ed + chr2L 4083005 intron ed + chr2L_12_4080001 chr2L_4080001 RAL-304_100b 157 chr2L 4082877 4082917 chr2L 4082990 4083046 27 124 14.0 12.5 13.2 1.9 169 chr2L 4082877 intron ed + chr2L 4082962 intron ed + chr2L 4083046 intron ed + chr2L_27_4080001 chr2L_4080001 RAL-304_100b 158 chr2L 4083415 4083427 chr2L 4083626 4083638 5 211 8.0 0.0 4.0 1.0 223 chr2L 4083415 intron ed + chr2L 4083526 intron ed + chr2L 4083638 intron ed + chr2L_5_4080001 chr2L_4080001 RAL-304_100b 159 chr2L 4150599 4150658 chr2L 4150704 4150758 32 102 3.0 7.5 5.2 5.2 159 chr2L 4150599 exon CG2955 + chr2L 4150678 exon CG2955 + chr2L 4150758 exon CG2955 + chr2L_32_4150001 chr2L_4150001 RAL-304_100b 160 chr2L 4152252 4152252 chr2L 16217660 16217660 5 12065408 48.5 75.0 61.8 0.1 12065408 chr2L 4152252 intergenic not near genes chr2L 10184956 exon Sur - chr2L 16217660 intergenic not near genes chr2L_5_10180001 chr2L_10180001 RAL-304_100b 161 chr2L 4155598 4155638 chr2L 4155849 4155904 23 263 0.0 11.0 5.5 3.5 306 chr2L 4155598 intergenic not near genes chr2L 4155751 intergenic not near genes chr2L 4155904 intergenic not near genes chr2L_23_4155001 chr2L_4155001 RAL-304_100b 162 chr2L 4159434 4159488 chr2L 4159544 4159598 49 107 8.0 16.0 12.0 3.8 164 chr2L 4159434 intergenic not near genes chr2L 4159516 intergenic not near genes chr2L 4159598 intergenic not near genes chr2L_49_4155001 chr2L_4155001 RAL-304_100b 163 chr2L 4166350 4166407 chr2L 4166458 4166515 29 105 13.5 9.5 11.5 2.3 165 chr2L 4166350 intergenic Or24a - chr2L 4166432 intergenic Or24a - chr2L 4166515 intergenic Or24a - chr2L_29_4165001 chr2L_4165001 RAL-304_100b 164 chr2L 4180102 4180118 chr2L 4180203 4180219 16 100 21.5 9.0 15.2 1.0 117 chr2L 4180102 intergenic not near genes chr2L 4180160 intergenic not near genes chr2L 4180219 intergenic not near genes chr2L_16_4180001 chr2L_4180001 RAL-304_100b 165 chr2L 4184454 4184467 chr2L 4184798 4184806 9 343 23.5 8.5 16.0 0.5 352 chr2L 4184454 intergenic not near genes chr2L 4184630 intergenic not near genes chr2L 4184806 intergenic not near genes chr2L_9_4180001 chr2L_4180001 RAL-304_100b 166 chr2L 4184468 4184508 chr2L 4184794 4184852 17 343 6.5 8.5 7.5 2.0 384 chr2L 4184468 intergenic not near genes chr2L 4184660 intergenic not near genes chr2L 4184852 intergenic not near genes chr2L_17_4180001 chr2L_4180001 RAL-304_100b 167 chr2L 4265469 4265523 chr2L 4265580 4265616 23 108 13.5 17.0 15.2 1.4 147 chr2L 4265469 intergenic not near genes chr2L 4265542 intergenic not near genes chr2L 4265616 intergenic not near genes chr2L_23_4265001 chr2L_4265001 RAL-304_100b 168 chr2L 4309762 4309771 chr2L 4309872 4309881 7 108 40.5 14.5 27.5 0.2 119 chr2L 4309762 intron tutl + chr2L 4309822 intron tutl + chr2L 4309881 intron tutl + chr2L_7_4305001 chr2L_4305001 RAL-304_100b 169 chr2L 4309772 4309819 chr2L 4309871 4309873 57 104 14.0 14.0 14.0 3.8 101 chr2L 4309772 intron tutl + chr2L 4309822 intron tutl + chr2L 4309873 intron tutl + chr2L_57_4305001 chr2L_4305001 RAL-304_100b 170 chr2L 4345466 4345519 chr2L 4345569 4345622 17 99 6.0 5.0 5.5 2.6 156 chr2L 4345466 3` UTR Atet + chr2L 4345544 3` UTR Atet + chr2L 4345622 3` UTR Atet + chr2L_17_4345001 chr2L_4345001 RAL-304_100b 171 chr2L 4351447 4351502 chr2L 4351548 4351603 48 96 12.5 11.0 11.8 3.8 156 chr2L 4351447 5` UTR CR44700 + chr2L 4351525 intergenic CR44700 + chr2L 4351603 intergenic CR44700 + chr2L_48_4350001 chr2L_4350001 RAL-304_100b 172 chr2L 4409892 4409910 chr2L 4410227 4410245 13 335 33.5 14.0 23.8 0.5 353 chr2L 4409892 intron CG15431 - chr2L 4410068 intron CG15431 - chr2L 4410245 intron CG15431 - chr2L_13_4410001 chr2L_4410001 RAL-304_100b 173 chr2L 4409911 4409946 chr2L 4410226 4410281 41 331 15.0 14.0 14.5 2.6 370 chr2L 4409911 intron CG15431 - chr2L 4410096 intron CG15431 - chr2L 4410281 intron CG15431 - chr2L_41_4410001 chr2L_4410001 RAL-304_100b 174 chr2L 4582718 4582721 chr2L 4582836 4582839 6 118 53.5 22.0 37.8 0.2 121 chr2L 4582718 intron,3` UTR dp -,CR43716 - chr2L 4582778 intron,3` UTR dp -,CR43716 - chr2L 4582839 intron,intron dp -,CR43716 - chr2L_6_4580001 chr2L_4580001 RAL-304_100b 175 chr2L 4582723 4582779 chr2L 4582835 4582878 47 107 12.5 21.0 16.8 2.6 155 chr2L 4582723 intron,3` UTR dp -,CR43716 - chr2L 4582800 intron,3` UTR dp -,CR43716 - chr2L 4582878 intron,3` UTR dp -,CR43716 - chr2L_47_4580001 chr2L_4580001 RAL-304_100b 176 chr2L 4601680 4601716 chr2L 4609146 4609182 mdg1 34 7465 25.0 13.5 19.2 1.7 7502 chr2L 4601680 intron dp - chr2L 4605431 intron dp - chr2L 4609182 intron dp - chr2L_34_4605001 chr2L_4605001 RAL-304_100b 177 chr2L 4601717 4601734 chr2L 4609143 4609200 mdg1 21 7461 17.5 12.5 15.0 1.3 7483 chr2L 4601717 intron dp - chr2L 4605458 intron dp - chr2L 4609200 intron dp - chr2L_21_4605001 chr2L_4605001 RAL-304_100b 178 chr2L 4661820 4661856 chr2L 4669425 4669459 opus 29 7603 13.0 31.0 22.0 1.3 7639 chr2L 4661820 intergenic not near genes chr2L 4665640 intergenic not near genes chr2L 4669459 intergenic not near genes chr2L_29_4665001 chr2L_4665001 RAL-304_100b 179 chr2L 4718740 4718794 chr2L 4718884 4718921 47 141 13.5 13.5 13.5 3.2 181 chr2L 4718740 intron CG34351 + chr2L 4718830 intron CG34351 + chr2L 4718921 intron CG34351 + chr2L_47_4715001 chr2L_4715001 RAL-304_100b 180 chr2L 4791938 4791985 chr2L 4792392 4792439 56 446 9.0 18.5 13.8 3.8 501 chr2L 4791938 intron CG15630 - chr2L 4792188 intron CG15630 - chr2L 4792439 intron CG15630 - chr2L_56_4790001 chr2L_4790001 RAL-304_100b 181 chr2L 4793284 4793321 chr2L 4793604 4793641 10 320 13.0 11.0 12.0 0.8 357 chr2L 4793284 intron CG15630 - chr2L 4793462 intron CG15630 - chr2L 4793641 exon CG15630 - chr2L_10_4790001 chr2L_4790001 RAL-304_100b 182 chr2L 4819467 4819519 chr2L 4819615 4819667 32 142 15.0 11.5 13.2 2.3 200 chr2L 4819467 intergenic not near genes chr2L 4819567 intergenic not near genes chr2L 4819667 intergenic not near genes chr2L_32_4815001 chr2L_4815001 RAL-304_100b 183 chr2L 4841046 4841063 chr2L 4841146 4841164 16 100 49.5 16.0 32.8 0.5 118 chr2L 4841046 intron CG12194 + chr2L 4841105 intron CG12194 + chr2L 4841164 exon CG12194 + chr2L_16_4840001 chr2L_4840001 RAL-304_100b 184 chr2L 4841064 4841102 chr2L 4841145 4841178 47 94 22.0 16.5 19.2 2.3 114 chr2L 4841064 intron CG12194 + chr2L 4841121 intron CG12194 + chr2L 4841178 exon CG12194 + chr2L_47_4840001 chr2L_4840001 RAL-304_100b 185 chr2L 4853696 4853751 chr2L 4853950 4854005 32 253 6.0 9.5 7.8 3.6 309 chr2L 4853696 intron pog + chr2L 4853850 intron pog + chr2L 4854005 intron pog + chr2L_32_4850001 chr2L_4850001 RAL-304_100b 186 chr2L 4892887 4892897 chr2L 4892995 4893005 6 108 0.5 11.5 6.0 0.9 118 chr2L 4892887 intron CG3036 + chr2L 4892946 intron CG3036 + chr2L 4893005 intron CG3036 + chr2L_6_4890001 chr2L_4890001 RAL-304_100b 187 chr2L 4918141 4918200 chr2L 4923239 4923336 jockey 25 5115 5.0 0.5 2.8 6.6 5195 chr2L 4918141 intron hoe1 - chr2L 4920738 intron hoe1 - chr2L 4923336 intron hoe1 - chr2L_25_4920001 chr2L_4920001 RAL-304_100b 188 chr2L 4923238 4923248 chr2L 4923328 4923364 9 113 0.0 10.5 5.2 1.5 126 chr2L 4923238 intron hoe1 - chr2L 4923301 intron hoe1 - chr2L 4923364 intron hoe1 - chr2L_9_4920001 chr2L_4920001 RAL-304_100b 189 chr2L 4925652 4925696 chr2L 4925756 4925800 15 103 11.5 10.5 11.0 1.2 148 chr2L 4925652 intron hoe1 - chr2L 4925726 intron hoe1 - chr2L 4925800 intron hoe1 - chr2L_15_4925001 chr2L_4925001 RAL-304_100b 190 chr2L 4953504 4953542 chr2L 4953770 4953776 pogo 5 257 13.0 0.0 6.5 0.7 272 chr2L 4953504 intergenic Jon25Bii - chr2L 4953640 intergenic not near genes chr2L 4953776 intergenic not near genes chr2L_5_4950001 chr2L_4950001 RAL-304_100b 191 chr2L 5027954 5027959 chr2L 5028060 5028068 5 108 3.5 18.5 11.0 0.4 114 chr2L 5027954 intron vkg - chr2L 5028011 intron vkg - chr2L 5028068 intron vkg - chr2L_5_5025001 chr2L_5025001 RAL-304_100b 192 chr2L 5027960 5027982 chr2L 5028053 5028091 15 106 3.5 16.5 10.0 1.4 131 chr2L 5027960 intron vkg - chr2L 5028026 intron vkg - chr2L 5028091 intron vkg - chr2L_15_5025001 chr2L_5025001 RAL-304_100b 193 chr2L 5027983 5027990 chr2L 5028041 5028099 7 98 2.0 12.0 7.0 0.9 116 chr2L 5027983 intron vkg - chr2L 5028041 intron vkg - chr2L 5028099 intron vkg - chr2L_7_5025001 chr2L_5025001 RAL-304_100b 194 chr2L 5099221 5099251 chr2L 5099342 5099372 25 120 20.5 21.5 21.0 1.1 151 chr2L 5099221 3` UTR,3` UTR CG4230 +,CG8680 - chr2L 5099296 3` UTR CG8680 - chr2L 5099372 3` UTR CG8680 - chr2L_25_5095001 chr2L_5095001 RAL-304_100b 195 chr2L 5099252 5099275 chr2L 5099333 5099371 17 113 7.0 16.5 11.8 1.3 119 chr2L 5099252 3` UTR,3` UTR CG4230 +,CG8680 - chr2L 5099312 3` UTR CG8680 - chr2L 5099371 3` UTR CG8680 - chr2L_17_5095001 chr2L_5095001 RAL-304_100b 196 chr2L 5165958 5165965 chr2L 5170071 5170073 4 4110 28.5 58.5 43.5 0.1 4115 chr2L 5165958 intron Msp300 + chr2L 5168016 intron Msp300 + chr2L 5170073 intron Msp300 + chr2L_4_5165001 chr2L_5165001 RAL-304_100b 197 chr2L 5228573 5228587 chr2L 5228710 5228724 10 136 0.0 3.0 1.5 4.0 151 chr2L 5228573 intron tkv - chr2L 5228648 intron tkv - chr2L 5228724 intron tkv - chr2L_10_5225001 chr2L_5225001 RAL-304_100b 198 chr2L 5242936 5242937 chr2L 16217660 16217660 17 10974724 89.0 75.0 82.0 0.2 10974724 chr2L 5242936 intron tkv - chr2L 10730298 3` UTR,5` UTR CG6443 +,CG17118 + chr2L 16217660 intergenic not near genes chr2L_17_10730001 chr2L_10730001 RAL-304_100b 199 chr2L 5262504 5262533 chr2L 5262606 5262615 30 96 43.0 29.5 36.2 0.8 111 chr2L 5262504 intron tkv - chr2L 5262560 intron tkv - chr2L 5262615 intron tkv - chr2L_30_5260001 chr2L_5260001 RAL-304_100b 200 chr2L 5262534 5262544 chr2L 5262604 5262608 8 78 29.5 26.5 28.0 0.3 74 chr2L 5262534 intron tkv - chr2L 5262571 intron tkv - chr2L 5262608 intron tkv - chr2L_8_5260001 chr2L_5260001 RAL-304_100b 201 chr2L 5265646 5265750 chr2L 5270058 5270192 8 4419 48.5 44.0 46.2 0.2 4546 chr2L 5265646 intron,exon tkv -,Cyp4ac1 + chr2L 5267919 intron,exon tkv -,Cyp4ac2 + chr2L 5270192 intron,exon tkv -,Cyp4ac3 + chr2L_8_5265001 chr2L_5265001 RAL-304_100b 202 chr2L 5342750 5342798 chr2L 5345155 5345203 Doc 25 2404 4.5 10.0 7.2 3.0 2453 chr2L 5342750 intergenic not near genes chr2L 5343976 intergenic not near genes chr2L 5345203 intergenic not near genes chr2L_25_5340001 chr2L_5340001 RAL-304_100b 203 chr2L 5448010 5448013 chr2L 5448119 5448122 4 109 0.0 21.5 10.8 0.3 112 chr2L 5448010 intergenic not near genes chr2L 5448066 intergenic not near genes chr2L 5448122 intergenic not near genes chr2L_4_5445001 chr2L_5445001 RAL-304_100b 204 chr2L 5448015 5448029 chr2L 5448103 5448138 11 104 0.0 15.0 7.5 1.3 123 chr2L 5448015 intergenic not near genes chr2L 5448076 intergenic not near genes chr2L 5448138 intergenic not near genes chr2L_11_5445001 chr2L_5445001 RAL-304_100b 205 chr2L 5449690 5449726 chr2L 5449805 5449816 6 116 0.0 0.0 0.0 6.0 126 chr2L 5449690 intergenic not near genes chr2L 5449753 intergenic not near genes chr2L 5449816 intergenic not near genes chr2L_6_5445001 chr2L_5445001 RAL-304_100b 206 chr2L 5490071 5490078 chr2L 5490171 5490183 4 103 34.5 35.0 34.8 0.1 112 chr2L 5490071 intergenic not near genes chr2L 5490127 intergenic not near genes chr2L 5490183 intergenic not near genes chr2L_4_5490001 chr2L_5490001 RAL-304_100b 207 chr2L 5490080 5490095 chr2L 5490170 5490178 8 88 31.0 34.0 32.5 0.2 98 chr2L 5490080 intergenic not near genes chr2L 5490129 intergenic not near genes chr2L 5490178 intergenic not near genes chr2L_8_5490001 chr2L_5490001 RAL-304_100b 208 chr2L 5516636 5516658 chr2L 5516740 5516762 10 104 17.0 8.0 12.5 0.7 126 chr2L 5516636 intergenic not near genes chr2L 5516699 intergenic not near genes chr2L 5516762 intergenic not near genes chr2L_10_5515001 chr2L_5515001 RAL-304_100b 209 chr2L 5516659 5516682 chr2L 5516737 5516786 13 102 11.5 7.0 9.2 1.3 127 chr2L 5516659 intergenic not near genes chr2L 5516722 intergenic not near genes chr2L 5516786 intergenic not near genes chr2L_13_5515001 chr2L_5515001 RAL-304_100b 210 chr2L 5550099 5550122 chr2L 5550194 5550204 7 91 14.0 0.0 7.0 0.9 105 chr2L 5550099 exon CG14014 - chr2L 5550152 exon CG14014 - chr2L 5550204 exon CG14014 - chr2L_7_5550001 chr2L_5550001 RAL-304_100b 211 chr2L 5550123 5550139 chr2L 5550193 5550237 5 85 9.5 0.0 4.8 0.9 114 chr2L 5550123 exon CG14014 - chr2L 5550180 exon CG14014 - chr2L 5550237 exon CG14014 - chr2L_5_5550001 chr2L_5550001 RAL-304_100b 212 chr2L 5685409 5685415 chr2L 5685511 5685512 4 99 39.5 22.0 30.8 0.1 103 chr2L 5685409 intergenic not near genes chr2L 5685460 intergenic not near genes chr2L 5685512 intergenic not near genes chr2L_4_5685001 chr2L_5685001 RAL-304_100b 213 chr2L 5685416 5685421 chr2L 5685509 5685511 7 96 34.5 22.0 28.2 0.2 95 chr2L 5685416 intergenic not near genes chr2L 5685464 intergenic not near genes chr2L 5685511 intergenic not near genes chr2L_7_5685001 chr2L_5685001 RAL-304_100b 214 chr2L 5685423 5685442 chr2L 5685503 5685545 15 93 23.0 16.5 19.8 0.7 122 chr2L 5685423 intergenic not near genes chr2L 5685484 intergenic not near genes chr2L 5685545 intergenic not near genes chr2L_15_5685001 chr2L_5685001 RAL-304_100b 215 chr2L 5686434 5686443 chr2L 5686541 5686544 9 106 11.5 19.0 15.2 0.6 110 chr2L 5686434 intergenic not near genes chr2L 5686489 intergenic not near genes chr2L 5686544 intergenic not near genes chr2L_9_5685001 chr2L_5685001 RAL-304_100b 216 chr2L 5691803 5691857 chr2L 5691930 5691984 19 125 9.5 3.0 6.2 2.6 181 chr2L 5691803 intergenic CR44819 +,CR44820 - chr2L 5691894 intergenic CR44819 +,CR44820 - chr2L 5691984 intergenic CR44819 + chr2L_19_5690001 chr2L_5690001 RAL-304_100b 217 chr2L 5695836 5695891 chr2L 5695953 5696008 32 115 9.5 11.5 10.5 2.8 172 chr2L 5695836 intergenic not near genes chr2L 5695922 intergenic not near genes chr2L 5696008 intergenic not near genes chr2L_32_5695001 chr2L_5695001 RAL-304_100b 218 chr2L 5764874 5764927 chr2L 5765008 5765060 6 134 0.0 7.0 3.5 1.3 186 chr2L 5764874 intron obst-E - chr2L 5764967 intron obst-E - chr2L 5765060 intron obst-E - chr2L_6_5760001 chr2L_5760001 RAL-304_100b 219 chr2L 5806030 5806078 chr2L 5806136 5806184 24 105 5.5 9.5 7.5 2.8 154 chr2L 5806030 intron CG11034 + chr2L 5806107 intron CG11034 + chr2L 5806184 intron CG11034 + chr2L_24_5805001 chr2L_5805001 RAL-304_100b 220 chr2L 5816158 5816214 chr2L 5816259 5816315 61 99 23.5 18.5 21.0 2.8 157 chr2L 5816158 intergenic not near genes chr2L 5816236 intergenic not near genes chr2L 5816315 intergenic not near genes chr2L_61_5815001 chr2L_5815001 RAL-304_100b 221 chr2L 5827688 5827741 chr2L 5836721 5836774 roo 33 9030 10.5 16.0 13.2 2.3 9086 chr2L 5827688 intron TrissinR + chr2L 5832231 intron TrissinR + chr2L 5836774 intron TrissinR + chr2L_33_5830001 chr2L_5830001 RAL-304_100b 222 chr2L 5870447 5870507 chr2L 5870549 5870609 48 93 11.0 11.0 11.0 4.0 162 chr2L 5870447 intron rau - chr2L 5870528 intron rau - chr2L 5870609 intron rau - chr2L_48_5870001 chr2L_5870001 RAL-304_100b 223 chr2L 5897573 5897626 chr2L 5897681 5897731 51 97 13.5 19.0 16.2 3.0 158 chr2L 5897573 intergenic not near genes chr2L 5897652 intergenic not near genes chr2L 5897731 intergenic not near genes chr2L_51_5895001 chr2L_5895001 RAL-304_100b 224 chr2L 5922907 5922913 chr2L 5923011 5923017 9 103 19.5 27.5 23.5 0.4 110 chr2L 5922907 3` UTR CG9016 - chr2L 5922962 3` UTR CG9016 - chr2L 5923017 3` UTR CG9016 - chr2L_9_5920001 chr2L_5920001 RAL-304_100b 225 chr2L 5926298 5926595 chr2L 5926449 5926699 19 127 12.5 0.0 6.2 2.6 401 chr2L 5926298 intron dsf + chr2L 5926498 intron dsf + chr2L 5926699 intron dsf + chr2L_19_5925001 chr2L_5925001 RAL-304_100b 226 chr2L 5926598 5926616 chr2L 5926702 5926720 8 104 10.0 1.0 5.5 1.2 122 chr2L 5926598 intron dsf + chr2L 5926659 intron dsf + chr2L 5926720 intron dsf + chr2L_8_5925001 chr2L_5925001 RAL-304_100b 227 chr2L 5931294 5931517 chr2L 5931431 5931646 36 134 8.5 11.0 9.8 3.3 352 chr2L 5931294 intron dsf + chr2L 5931470 intron dsf + chr2L 5931646 intron dsf + chr2L_36_5930001 chr2L_5930001 RAL-304_100b 228 chr2L 5958221 5958251 chr2L 5958344 5958346 4 116 29.5 58.5 44.0 0.1 125 chr2L 5958221 exon Vm26Ac - chr2L 5958284 exon Vm26Ac - chr2L 5958346 exon Vm26Ac - chr2L_4_5955001 chr2L_5955001 RAL-304_100b 229 chr2L 5982106 5982164 chr2L 5982210 5982268 50 95 16.0 15.5 15.8 3.0 162 chr2L 5982106 intron eIF-4a + chr2L 5982187 intron eIF-4a + chr2L 5982268 intron eIF-4a + chr2L_50_5980001 chr2L_5980001 RAL-304_100b 230 chr2L 6053203 6053255 chr2L 6053449 6053502 38 242 11.0 10.5 10.8 3.2 299 chr2L 6053203 exon CG9135 + chr2L 6053352 3` UTR CG9135 + chr2L 6053502 3` UTR CG9135 + chr2L_38_6050001 chr2L_6050001 RAL-304_100b 231 chr2L 6075063 6075069 chr2L 6075180 6075186 6 117 8.5 0.0 4.2 1.2 123 chr2L 6075063 intergenic CR43801 - chr2L 6075124 intergenic CR43801 - chr2L 6075186 intergenic CR43801 - chr2L_6_6075001 chr2L_6075001 RAL-304_100b 232 chr2L 6185419 6185473 chr2L 6185517 6185576 49 95 22.5 15.5 19.0 2.5 157 chr2L 6185419 intron CG34380 + chr2L 6185498 intron CG34380 + chr2L 6185576 intron CG34380 + chr2L_49_6185001 chr2L_6185001 RAL-304_100b 233 chr2L 6199982 6200032 chr2L 6200158 6200208 45 171 5.5 13.0 9.2 4.4 226 chr2L 6199982 intron CG34380 + chr2L 6200095 intron CG34380 + chr2L 6200208 intron CG34380 + chr2L_45_6200001 chr2L_6200001 RAL-304_100b 234 chr2L 6227372 6227389 chr2L 6227453 6227495 17 101 17.0 13.5 15.2 1.0 123 chr2L 6227372 intergenic not near genes chr2L 6227434 intergenic not near genes chr2L 6227495 intergenic not near genes chr2L_17_6225001 chr2L_6225001 RAL-304_100b 235 chr2L 6231635 6231677 chr2L 6231742 6231749 5 99 16.0 0.0 8.0 0.6 114 chr2L 6231635 intergenic CR44823 + chr2L 6231692 intergenic CR44823 + chr2L 6231749 intergenic CR44823 + chr2L_5_6230001 chr2L_6230001 RAL-304_100b 236 chr2L 6233461 6233495 chr2L 6233562 6233566 13 94 20.0 1.0 10.5 1.1 105 chr2L 6233461 intergenic not near genes chr2L 6233514 intergenic not near genes chr2L 6233566 intergenic not near genes chr2L_13_6230001 chr2L_6230001 RAL-304_100b 237 chr2L 6253596 6253635 chr2L 6253697 6253736 16 100 10.5 10.0 10.2 1.4 140 chr2L 6253596 intron Ddr + chr2L 6253666 intron Ddr + chr2L 6253736 intron Ddr + chr2L_16_6250001 chr2L_6250001 RAL-304_100b 238 chr2L 6279615 6279653 chr2L 6279719 6279757 INE-1 22 102 10.0 6.0 8.0 2.4 142 chr2L 6279615 intron Ddr + chr2L 6279686 intron Ddr + chr2L 6279757 intron Ddr + chr2L_22_6275001 chr2L_6275001 RAL-304_100b 239 chr2L 6283917 6283977 chr2L 6284053 6284091 7 130 10.5 1.5 6.0 1.0 174 chr2L 6283917 intron Ddr + chr2L 6284004 intron Ddr + chr2L 6284091 intron Ddr + chr2L_7_6280001 chr2L_6280001 RAL-304_100b 240 chr2L 6285873 6285928 chr2L 6286064 6286098 36 188 13.0 11.0 12.0 2.8 225 chr2L 6285873 intron Ddr + chr2L 6285986 intron Ddr + chr2L 6286098 intron Ddr + chr2L_36_6285001 chr2L_6285001 RAL-304_100b 241 chr2L 6312357 6312364 chr2L 6312443 6312466 4 98 0.0 14.0 7.0 0.5 109 chr2L 6312357 intron Ddr + chr2L 6312412 intron Ddr + chr2L 6312466 intron Ddr + chr2L_4_6310001 chr2L_6310001 RAL-304_100b 242 chr2L 6318710 6318764 chr2L 6318889 6318943 51 176 10.0 14.0 12.0 3.9 233 chr2L 6318710 intron Ddr + chr2L 6318826 intron Ddr + chr2L 6318943 intron Ddr + chr2L_51_6315001 chr2L_6315001 RAL-304_100b 243 chr2L 6343667 6343669 chr2L 6343956 6343959 6 289 130.0 117.5 123.8 0.0 292 chr2L 6343667 intron Cpr + chr2L 6343813 intron Cpr + chr2L 6343959 intron Cpr + chr2L_6_6340001 chr2L_6340001 RAL-304_100b 244 chr2L 6343666 6343699 chr2L 6343960 6343988 33 294 159.0 108.5 133.8 0.2 322 chr2L 6343666 intron Cpr + chr2L 6343827 intron Cpr + chr2L 6343988 intron Cpr + chr2L_33_6340001 chr2L_6340001 RAL-304_100b 245 chr2L 6349056 6349075 chr2L 6349159 6349163 11 101 6.5 7.5 7.0 1.4 107 chr2L 6349056 intergenic CG9498 - chr2L 6349110 intergenic CG9498 - chr2L 6349163 intergenic CG9498 - chr2L_11_6345001 chr2L_6345001 RAL-304_100b 246 chr2L 6358216 6358257 chr2L 6358601 6358642 8 385 0.0 11.0 5.5 1.2 426 chr2L 6358216 intron CG9500 - chr2L 6358429 3` UTR CR44777 - chr2L 6358642 3` UTR CR44777 - chr2L_8_6355001 chr2L_6355001 RAL-304_100b 247 chr2L 6363126 6363182 chr2L 6366071 6366129 Burdock 57 2942 5.0 18.0 11.5 4.6 3003 chr2L 6363126 intergenic not near genes chr2L 6364628 intergenic not near genes chr2L 6366129 intergenic not near genes chr2L_57_6360001 chr2L_6360001 RAL-304_100b 248 chr2L 6426833 6426841 chr2L 6445118 6445126 roo 6 18285 33.0 16.0 24.5 0.2 18293 chr2L 6426833 3` UTR CG9527 - chr2L 6435980 intron CG9527 - chr2L 6445126 exon CG9527 - chr2L_6_6435001 chr2L_6435001 RAL-304_100b 249 chr2L 6426842 6426881 chr2L 6445117 6445166 roo 34 18284 19.0 16.0 17.5 1.8 18324 chr2L 6426842 3` UTR CG9527 - chr2L 6436004 intron CG9527 - chr2L 6445166 exon CG9527 - chr2L_34_6435001 chr2L_6435001 RAL-304_100b 250 chr2L 6426882 6426887 chr2L 6445114 6445159 roo 6 18268 18.0 15.0 16.5 0.3 18277 chr2L 6426882 3` UTR CG9527 - chr2L 6436020 intron CG9527 - chr2L 6445159 exon CG9527 - chr2L_6_6435001 chr2L_6435001 RAL-304_100b 251 chr2L 6513515 6513517 chr2L 6513576 6513608 4 83 6.5 14.0 10.2 0.4 93 chr2L 6513515 intron CG31637 + chr2L 6513562 intron CG31637 + chr2L 6513608 intron CG31637 + chr2L_4_6510001 chr2L_6510001 RAL-304_100b 252 chr2L 6513520 6513536 chr2L 6513575 6513619 17 88 5.5 12.5 9.0 1.7 99 chr2L 6513520 intron CG31637 + chr2L 6513570 intron CG31637 + chr2L 6513619 intron CG31637 + chr2L_17_6510001 chr2L_6510001 RAL-304_100b 253 chr2L 6544346 6544394 chr2L 6544463 6544511 50 115 11.0 16.5 13.8 3.4 165 chr2L 6544346 intron eya - chr2L 6544428 intron eya - chr2L 6544511 intron eya - chr2L_50_6540001 chr2L_6540001 RAL-304_100b 254 chr2L 6545766 6545786 chr2L 6545877 6545897 22 109 38.5 16.5 27.5 0.8 131 chr2L 6545766 intron eya - chr2L 6545832 intron eya - chr2L 6545897 intron eya - chr2L_22_6545001 chr2L_6545001 RAL-304_100b 255 chr2L 6545787 6545822 chr2L 6545872 6545927 30 108 14.5 12.5 13.5 2.1 140 chr2L 6545787 intron eya - chr2L 6545857 intron eya - chr2L 6545927 intron eya - chr2L_30_6545001 chr2L_6545001 RAL-304_100b 256 chr2L 6626863 6626890 chr2L 6626973 6627000 24 106 29.5 13.5 21.5 1.1 137 chr2L 6626863 intron Oatp26F - chr2L 6626932 intron Oatp26F - chr2L 6627000 intron Oatp26F - chr2L_24_6625001 chr2L_6625001 RAL-304_100b 257 chr2L 6626892 6626920 chr2L 6626970 6626994 28 97 13.0 13.0 13.0 2.0 102 chr2L 6626892 intron Oatp26F - chr2L 6626943 intron Oatp26F - chr2L 6626994 intron Oatp26F - chr2L_28_6625001 chr2L_6625001 RAL-304_100b 258 chr2L 6643795 6643855 chr2L 6643991 6644051 41 192 7.5 8.0 7.8 4.7 256 chr2L 6643795 intron CG31635 - chr2L 6643923 intron CG31635 - chr2L 6644051 intron CG31635 - chr2L_41_6640001 chr2L_6640001 RAL-304_100b 259 chr2L 6746071 6746117 chr2L 6746172 6746218 33 99 8.5 13.0 10.8 2.8 147 chr2L 6746071 intron CG11221 + chr2L 6746144 intron CG11221 + chr2L 6746218 intron CG11221 + chr2L_33_6745001 chr2L_6745001 RAL-304_100b 260 chr2L 6771962 6771976 chr2L 6772074 6772078 11 109 42.0 24.0 33.0 0.3 116 chr2L 6771962 intron CG11321 - chr2L 6772020 intron CG11321 - chr2L 6772078 intron CG11321 - chr2L_11_6770001 chr2L_6770001 RAL-304_100b 261 chr2L 6771977 6772022 chr2L 6772070 6772119 53 102 18.5 22.0 20.2 2.5 142 chr2L 6771977 intron CG11321 - chr2L 6772048 intron CG11321 - chr2L 6772119 intron CG11321 - chr2L_53_6770001 chr2L_6770001 RAL-304_100b 262 chr2L 6772566 6772587 chr2L 6772674 6772695 13 107 43.5 39.5 41.5 0.3 129 chr2L 6772566 5` UTR CG11321 - chr2L 6772630 5` UTR CG11321 - chr2L 6772695 5` UTR CG11321 - chr2L_13_6770001 chr2L_6770001 RAL-304_100b 263 chr2L 6772588 6772596 chr2L 6772666 6772700 16 97 38.0 32.5 35.2 0.4 112 chr2L 6772588 5` UTR CG11321 - chr2L 6772644 5` UTR CG11321 - chr2L 6772700 5` UTR CG11321 - chr2L_16_6770001 chr2L_6770001 RAL-304_100b 264 chr2L 6799512 6799536 chr2L 6799625 6799648 10 112 25.5 4.5 15.0 0.6 136 chr2L 6799512 5` UTR CR43610 + chr2L 6799580 5` UTR CR43610 + chr2L 6799648 intergenic CR43610 +,CG17376 - chr2L_10_6795001 chr2L_6795001 RAL-304_100b 265 chr2L 6799538 6799572 chr2L 6799623 6799685 15 107 7.5 3.5 5.5 2.3 147 chr2L 6799538 5` UTR CR43610 + chr2L 6799612 intergenic CR43610 +,CG17376 - chr2L 6799685 intergenic CR43610 +,CG17376 - chr2L_15_6795001 chr2L_6795001 RAL-304_100b 266 chr2L 6800637 6800661 chr2L 6800735 6800761 19 98 28.5 18.0 23.2 0.8 124 chr2L 6800637 exon CG17376 - chr2L 6800699 intron CG17376 - chr2L 6800761 5` UTR CG17376 - chr2L_19_6800001 chr2L_6800001 RAL-304_100b 267 chr2L 6800662 6800667 chr2L 6800734 6800770 23 89 25.5 18.0 21.8 1.0 108 chr2L 6800662 exon CG17376 - chr2L 6800716 intron CG17376 - chr2L 6800770 5` UTR CG17376 - chr2L_23_6800001 chr2L_6800001 RAL-304_100b 268 chr2L 6800668 6800690 chr2L 6800733 6800777 41 94 20.0 16.5 18.2 2.1 109 chr2L 6800668 exon CG17376 - chr2L 6800722 intron CG17376 - chr2L 6800777 5` UTR CG17376 - chr2L_41_6800001 chr2L_6800001 RAL-304_100b 269 chr2L 6818104 6818142 chr2L 6818218 6818239 7 111 3.5 17.0 10.2 0.6 135 chr2L 6818104 intergenic not near genes chr2L 6818172 intergenic not near genes chr2L 6818239 intergenic not near genes chr2L_7_6815001 chr2L_6815001 RAL-304_100b 270 chr2L 6867748 6867756 chr2L 6867863 6867871 7 114 31.0 23.5 27.2 0.2 123 chr2L 6867748 intron Nha1 - chr2L 6867810 intron Nha1 - chr2L 6867871 intron Nha1 - chr2L_7_6865001 chr2L_6865001 RAL-304_100b 271 chr2L 6867758 6867771 chr2L 6867858 6867886 6 112 23.0 23.0 23.0 0.2 128 chr2L 6867758 intron Nha1 - chr2L 6867822 intron Nha1 - chr2L 6867886 intron Nha1 - chr2L_6_6865001 chr2L_6865001 RAL-304_100b 272 chr2L 6876772 6876777 chr2L 6882967 6882991 diver 8 6201 37.5 14.0 25.8 0.3 6219 chr2L 6876772 intron Nlg2 + chr2L 6879882 intron Nlg2 + chr2L 6882991 intron Nlg2 + chr2L_8_6875001 chr2L_6875001 RAL-304_100b 273 chr2L 6876779 6876810 chr2L 6882965 6883011 diver 17 6200 21.0 13.0 17.0 0.9 6232 chr2L 6876779 intron Nlg2 + chr2L 6879895 intron Nlg2 + chr2L 6883011 intron Nlg2 + chr2L_17_6875001 chr2L_6875001 RAL-304_100b 274 chr2L 6891421 6891471 chr2L 6891543 6891579 45 121 7.5 10.5 9.0 4.5 158 chr2L 6891421 intron Nlg2 + chr2L 6891500 intron Nlg2 + chr2L 6891579 intron Nlg2 + chr2L_45_6890001 chr2L_6890001 RAL-304_100b 275 chr2L 6991407 6991436 chr2L 6998551 6998565 HMS-Beagle 11 7140 23.0 18.5 20.8 0.5 7158 chr2L 6991407 intron uif - chr2L 6994986 intron uif - chr2L 6998565 intron uif - chr2L_11_6990001 chr2L_6990001 RAL-304_100b 276 chr2L 6999419 6999429 chr2L 6999520 6999530 9 99 31.5 13.0 22.2 0.4 111 chr2L 6999419 intron uif - chr2L 6999474 intron uif - chr2L 6999530 intron uif - chr2L_9_6995001 chr2L_6995001 RAL-304_100b 277 chr2L 6999431 6999473 chr2L 6999518 6999569 40 98 14.0 13.0 13.5 2.8 138 chr2L 6999431 intron uif - chr2L 6999500 intron uif - chr2L 6999569 intron uif - chr2L_40_6995001 chr2L_6995001 RAL-304_100b 278 chr2L 7005205 7005233 chr2L 7005326 7005353 20 121 21.0 12.5 16.8 1.1 148 chr2L 7005205 intron uif - chr2L 7005279 intron uif - chr2L 7005353 intron uif - chr2L_20_7005001 chr2L_7005001 RAL-304_100b 279 chr2L 7005235 7005255 chr2L 7005325 7005376 12 116 12.5 12.5 12.5 0.9 141 chr2L 7005235 intron uif - chr2L 7005306 intron uif - chr2L 7005376 intron uif - chr2L_12_7005001 chr2L_7005001 RAL-304_100b 280 chr2L 7051145 7051149 chr2L 7051245 7051245 6 100 0.0 2.0 1.0 3.0 100 chr2L 7051145 intron milt + chr2L 7051195 intron milt + chr2L 7051245 intron milt + chr2L_6_7050001 chr2L_7050001 RAL-304_100b 281 chr2L 7051150 7051166 chr2L 7051236 7051267 18 96 0.0 2.0 1.0 9.0 117 chr2L 7051150 intron milt + chr2L 7051208 intron milt + chr2L 7051267 intron milt + chr2L_18_7050001 chr2L_7050001 RAL-304_100b 282 chr2L 7111733 7111734 chr2L 7111843 7111844 4 110 20.0 8.0 14.0 0.3 111 chr2L 7111733 intron Pvf3 - chr2L 7111788 intron Pvf3 - chr2L 7111844 intron Pvf3 - chr2L_4_7110001 chr2L_7110001 RAL-304_100b 283 chr2L 7111736 7111774 chr2L 7111841 7111854 19 106 8.5 7.5 8.0 2.1 118 chr2L 7111736 intron Pvf3 - chr2L 7111795 intron Pvf3 - chr2L 7111854 intron Pvf3 - chr2L_19_7110001 chr2L_7110001 RAL-304_100b 284 chr2L 7125765 7125809 chr2L 7125906 7125950 22 139 10.5 6.0 8.2 2.4 185 chr2L 7125765 intron Pvf3 - chr2L 7125858 intron Pvf3 - chr2L 7125950 intron Pvf3 - chr2L_22_7125001 chr2L_7125001 RAL-304_100b 285 chr2L 7126837 7126875 chr2L 7126941 7126979 12 101 10.0 0.5 5.2 1.9 142 chr2L 7126837 intron Pvf3 - chr2L 7126908 intron Pvf3 - chr2L 7126979 intron Pvf3 - chr2L_12_7125001 chr2L_7125001 RAL-304_100b 286 chr2L 7151814 7151851 chr2L 7152134 7152164 33 311 13.5 13.0 13.2 2.3 350 chr2L 7151814 intron Pvf3 - chr2L 7151989 intron Pvf3 - chr2L 7152164 intron Pvf3 - chr2L_33_7150001 chr2L_7150001 RAL-304_100b 287 chr2L 7165753 7165812 chr2L 7165859 7165918 56 103 6.0 9.5 7.8 6.4 165 chr2L 7165753 intergenic not near genes chr2L 7165836 intergenic not near genes chr2L 7165918 intergenic not near genes chr2L_56_7165001 chr2L_7165001 RAL-304_100b 288 chr2L 7246529 7246580 chr2L 7247413 7247464 15 881 0.0 6.5 3.2 3.6 935 chr2L 7246529 intron Ndae1 - chr2L 7246996 intron Ndae1 - chr2L 7247464 intron Ndae1 - chr2L_15_7245001 chr2L_7245001 RAL-304_100b 289 chr2L 7254517 7254545 chr2L 7254612 7254648 14 101 0.0 3.0 1.5 5.6 131 chr2L 7254517 intergenic not near genes chr2L 7254582 intergenic not near genes chr2L 7254648 intergenic not near genes chr2L_14_7250001 chr2L_7250001 RAL-304_100b 290 chr2L 7258486 7258492 chr2L 7258686 7258692 7 200 7.0 23.0 15.0 0.4 206 chr2L 7258486 intron Wnt4 - chr2L 7258589 intron Wnt4 - chr2L 7258692 intron Wnt4 - chr2L_7_7255001 chr2L_7255001 RAL-304_100b 291 chr2L 7258496 7258514 chr2L 7258671 7258697 13 195 4.0 16.0 10.0 1.2 201 chr2L 7258496 intron Wnt4 - chr2L 7258596 intron Wnt4 - chr2L 7258697 intron Wnt4 - chr2L_13_7255001 chr2L_7255001 RAL-304_100b 292 chr2L 7301272 7301328 chr2L 7301380 7301401 50 104 9.0 9.0 9.0 5.0 129 chr2L 7301272 intergenic not near genes chr2L 7301336 intergenic not near genes chr2L 7301401 intergenic not near genes chr2L_50_7300001 chr2L_7300001 RAL-304_100b 293 chr2L 7343308 7343356 chr2L 7350443 7350472 roo 43 7136 21.0 18.5 19.8 2.1 7164 chr2L 7343308 intron Wnt6 + chr2L 7346890 intron Wnt6 + chr2L 7350472 intron Wnt6 + chr2L_43_7345001 chr2L_7345001 RAL-304_100b 294 chr2L 7370773 7370815 chr2L 7370903 7370945 19 126 12.5 12.5 12.5 1.4 172 chr2L 7370773 intron Wnt10 + chr2L 7370859 intron Wnt10 + chr2L 7370945 intron Wnt10 + chr2L_19_7370001 chr2L_7370001 RAL-304_100b 295 chr2L 7410671 7410675 chr2L 7410756 7410795 4 103 0.0 12.0 6.0 0.6 124 chr2L 7410671 intergenic CG15818 + chr2L 7410733 intergenic CG15818 + chr2L 7410795 intergenic CG15818 + chr2L_4_7410001 chr2L_7410001 RAL-304_100b 296 chr2L 7489678 7489718 chr2L 7489792 7489832 21 111 14.5 14.5 14.5 1.4 154 chr2L 7489678 intron Ziz - chr2L 7489755 intron Ziz - chr2L 7489832 intron Ziz - chr2L_21_7485001 chr2L_7485001 RAL-304_100b 297 chr2L 7548086 7548110 chr2L 7550553 7550572 Burdock 10 2462 17.5 21.5 19.5 0.5 2486 chr2L 7548086 intron RapGAP1 - chr2L 7549329 intron RapGAP1 - chr2L 7550572 intron RapGAP1 - chr2L_10_7545001 chr2L_7545001 RAL-304_100b 298 chr2L 7567461 7567514 chr2L 7567562 7567616 46 99 12.5 11.0 11.8 3.6 155 chr2L 7567461 intron RapGAP1 - chr2L 7567538 intron RapGAP1 - chr2L 7567616 intron RapGAP1 - chr2L_46_7565001 chr2L_7565001 RAL-304_100b 299 chr2L 7579170 7579211 chr2L 7579386 7579427 BS 14 216 8.0 0.5 4.2 2.7 257 chr2L 7579170 intergenic RapGAP1 - chr2L 7579298 intergenic RapGAP1 - chr2L 7579427 intergenic RapGAP1 - chr2L_14_7575001 chr2L_7575001 RAL-304_100b 300 chr2L 7585488 7585495 chr2L 7585612 7585612 5 123 16.5 7.5 12.0 0.4 124 chr2L 7585488 intergenic not near genes chr2L 7585550 intergenic not near genes chr2L 7585612 intergenic not near genes chr2L_5_7585001 chr2L_7585001 RAL-304_100b 301 chr2L 7608712 7608771 chr2L 7608930 7608989 39 217 11.5 21.5 16.5 2.2 277 chr2L 7608712 intron CG6739 + chr2L 7608850 intron CG6739 + chr2L 7608989 intron CG6739 + chr2L_39_7605001 chr2L_7605001 RAL-304_100b 302 chr2L 7640403 7640422 chr2L 7640514 7640533 17 111 17.5 19.5 18.5 0.9 130 chr2L 7640403 intergenic not near genes chr2L 7640468 intergenic not near genes chr2L 7640533 intergenic not near genes chr2L_17_7640001 chr2L_7640001 RAL-304_100b 303 chr2L 7685473 7685491 chr2L 7685576 7685592 15 100 30.0 13.0 21.5 0.7 119 chr2L 7685473 intron Myo28B1 + chr2L 7685532 intron Myo28B1 + chr2L 7685592 intron Myo28B1 + chr2L_15_7685001 chr2L_7685001 RAL-304_100b 304 chr2L 7685492 7685526 chr2L 7685574 7685615 33 95 15.0 12.5 13.8 2.2 123 chr2L 7685492 intron Myo28B1 + chr2L 7685554 intron Myo28B1 + chr2L 7685615 intron Myo28B1 + chr2L_33_7685001 chr2L_7685001 RAL-304_100b 305 chr2L 7702869 7702919 chr2L 7703062 7703112 59 189 15.5 20.0 17.8 3.1 243 chr2L 7702869 5` UTR Tep3 + chr2L 7702990 5` UTR Tep3 + chr2L 7703112 5` UTR Tep3 + chr2L_59_7700001 chr2L_7700001 RAL-304_100b 306 chr2L 7867545 7867567 chr2L 7867664 7867686 15 118 31.0 14.0 22.5 0.6 141 chr2L 7867545 intron Proc - chr2L 7867616 intron Proc - chr2L 7867686 intron Proc - chr2L_15_7865001 chr2L_7865001 RAL-304_100b 307 chr2L 7867568 7867597 chr2L 7867657 7867716 25 113 11.5 11.0 11.2 2.0 148 chr2L 7867568 intron Proc - chr2L 7867642 intron Proc - chr2L 7867716 intron Proc - chr2L_25_7865001 chr2L_7865001 RAL-304_100b 308 chr2L 7941174 7941195 chr2L 7941278 7941283 23 99 32.5 25.0 28.8 0.8 109 chr2L 7941174 intron Snoo - chr2L 7941228 intron Snoo - chr2L 7941283 intron Snoo - chr2L_23_7940001 chr2L_7940001 RAL-304_100b 309 chr2L 7977065 7977113 chr2L 7984066 7984114 297 33 6998 21.0 21.5 21.2 1.5 7049 chr2L 7977065 intron Snoo - chr2L 7980590 intron Snoo - chr2L 7984114 intron,5` UTR Snoo -,CG7231 + chr2L_33_7980001 chr2L_7980001 RAL-304_100b 310 chr2L 7997009 7997065 chr2L 7997133 7997190 28 124 6.5 5.0 5.8 4.1 181 chr2L 7997009 intron CG7227 - chr2L 7997100 intron CG7227 - chr2L 7997190 intron CG7227 - chr2L_28_7995001 chr2L_7995001 RAL-304_100b 311 chr2L 7999739 7999774 chr2L 7999841 7999876 19 97 7.0 25.5 16.2 1.1 137 chr2L 7999739 intron Wwox - chr2L 7999808 3` UTR Wwox - chr2L 7999876 exon Wwox - chr2L_19_7995001 chr2L_7995001 RAL-304_100b 312 chr2L 8013589 8013607 chr2L 8018819 8018837 copia 14 5230 27.0 0.0 13.5 1.0 5248 chr2L 8013589 intron Tg + chr2L 8016213 intron Tg + chr2L 8018837 intron Tg + chr2L_14_8015001 chr2L_8015001 RAL-304_100b 313 chr2L 8013619 8013643 chr2L 8023580 8023604 copia 16 9961 11.5 9.5 10.5 1.4 9985 chr2L 8013619 intron Tg + chr2L 8018612 intron Tg + chr2L 8023604 intron Tg + chr2L_16_8015001 chr2L_8015001 RAL-304_100b 314 chr2L 8018822 8018833 chr2L 8023583 8023642 Doc 13 4802 0.0 10.5 5.2 2.1 4820 chr2L 8018822 intron Tg + chr2L 8021232 intron Tg + chr2L 8023642 intron Tg + chr2L_13_8020001 chr2L_8020001 RAL-304_100b 315 chr2L 8044087 8044089 chr2L 8044181 8044193 8 100 41.0 23.0 32.0 0.2 106 chr2L 8044087 intron CG7466 + chr2L 8044140 intron CG7466 + chr2L 8044193 intron CG7466 + chr2L_8_8040001 chr2L_8040001 RAL-304_100b 316 chr2L 8044090 8044130 chr2L 8044176 8044234 40 98 10.0 20.0 15.0 2.5 144 chr2L 8044090 intron CG7466 + chr2L 8044162 intron CG7466 + chr2L 8044234 intron CG7466 + chr2L_40_8040001 chr2L_8040001 RAL-304_100b 317 chr2L 8167122 8167181 chr2L 8167238 8167274 44 111 13.0 16.0 14.5 2.8 152 chr2L 8167122 intron Piezo + chr2L 8167198 intron Piezo + chr2L 8167274 intron Piezo + chr2L_44_8165001 chr2L_8165001 RAL-304_100b 318 chr2L 8171274 8171282 chr2L 8171380 8171386 6 106 0.0 24.0 12.0 0.5 112 chr2L 8171274 intron Piezo + chr2L 8171330 intron Piezo + chr2L 8171386 intron Piezo + chr2L_6_8170001 chr2L_8170001 RAL-304_100b 319 chr2L 8171283 8171300 chr2L 8171373 8171406 12 105 0.0 22.0 11.0 1.0 123 chr2L 8171283 intron Piezo + chr2L 8171344 intron Piezo + chr2L 8171406 intron Piezo + chr2L_12_8170001 chr2L_8170001 RAL-304_100b 320 chr2L 8185487 8185514 chr2L 8185597 8185628 7 113 0.0 13.0 6.5 0.9 141 chr2L 8185487 intron Piezo + chr2L 8185558 intron Piezo + chr2L 8185628 intron Piezo + chr2L_7_8185001 chr2L_8185001 RAL-304_100b 321 chr2L 8244707 8244749 chr2L 8244854 8244896 48 145 6.0 13.5 9.8 4.4 189 chr2L 8244707 intron CG8086 - chr2L 8244802 intron CG8086 - chr2L 8244896 intron CG8086 - chr2L_48_8240001 chr2L_8240001 RAL-304_100b 322 chr2L 8286270 8286327 chr2L 8286382 8286439 46 107 10.0 11.0 10.5 4.0 169 chr2L 8286270 intron Btk29A - chr2L 8286354 intron Btk29A - chr2L 8286439 intron Btk29A - chr2L_46_8285001 chr2L_8285001 RAL-304_100b 323 chr2L 8336915 8336967 chr2L 8337013 8337071 44 99 8.5 16.0 12.2 3.3 156 chr2L 8336915 intergenic not near genes chr2L 8336993 intergenic not near genes chr2L 8337071 intergenic not near genes chr2L_44_8335001 chr2L_8335001 RAL-304_100b 324 chr2L 8389922 8389980 chr2L 8390081 8390139 54 156 4.0 14.5 9.2 5.3 217 chr2L 8389922 3` UTR CG42820 - chr2L 8390030 3` UTR CG42820 - chr2L 8390139 exon CG42820 - chr2L_54_8390001 chr2L_8390001 RAL-304_100b 325 chr2L 8452403 8452410 chr2L 8461599 8461600 roo 4 9194 18.0 16.5 17.2 0.2 9197 chr2L 8452403 intron fu12 - chr2L 8457002 intron fu12 - chr2L 8461600 intron fu12 - chr2L_4_8455001 chr2L_8455001 RAL-304_100b 326 chr2L 8452412 8452444 chr2L 8461592 8461613 roo 32 9192 9.5 14.5 12.0 2.5 9201 chr2L 8452412 intron fu12 - chr2L 8457012 intron fu12 - chr2L 8461613 intron fu12 - chr2L_32_8455001 chr2L_8455001 RAL-304_100b 327 chr2L 8498183 8498237 chr2L 8498289 8498343 39 106 10.5 13.5 12.0 3.0 160 chr2L 8498183 intron Dh31 - chr2L 8498263 intron Dh31 - chr2L 8498343 intron Dh31 - chr2L_39_8495001 chr2L_8495001 RAL-304_100b 328 chr2L 8508970 8508973 chr2L 8509097 8509100 5 127 0.0 0.5 0.2 4.2 130 chr2L 8508970 intergenic CG13096 - chr2L 8509035 intergenic CG13096 - chr2L 8509100 3` UTR CG13096 - chr2L_5_8505001 chr2L_8505001 RAL-304_100b 329 chr2L 8508975 8508998 chr2L 8509096 8509125 20 125 0.0 0.5 0.2 16.7 150 chr2L 8508975 intergenic CG13096 - chr2L 8509050 intergenic CG13096 - chr2L 8509125 3` UTR CG13096 - chr2L_20_8505001 chr2L_8505001 RAL-304_100b 330 chr2L 8538142 8538148 chr2L 8538243 8538249 6 101 20.5 0.5 10.5 0.5 107 chr2L 8538142 intron CG17834 + chr2L 8538196 intron CG17834 + chr2L 8538249 intron CG17834 + chr2L_6_8535001 chr2L_8535001 RAL-304_100b 331 chr2L 8538149 8538189 chr2L 8538239 8538300 7 101 7.5 1.5 4.5 1.3 151 chr2L 8538149 intron CG17834 + chr2L 8538224 intron CG17834 + chr2L 8538300 intron CG17834 + chr2L_7_8535001 chr2L_8535001 RAL-304_100b 332 chr2L 8578452 8578452 chr2L 16071771 16071771 4 7493319 67.5 88.5 78.0 0.1 7493319 chr2L 8578452 intron Sema-1a + chr2L 12325112 intergenic not near genes chr2L 16071771 intron beat-Ia + chr2L_4_12325001 chr2L_12325001 RAL-304_100b 333 chr2L 8594444 8594453 chr2L 8601523 8601532 297 6 7078 43.0 13.5 28.2 0.2 7088 chr2L 8594444 intron,3` UTR Sema-1a +,CR43855 - chr2L 8597988 intron Sema-1a + chr2L 8601532 intron Sema-1a + chr2L_6_8595001 chr2L_8595001 RAL-304_100b 334 chr2L 8594456 8594490 chr2L 8601518 8601569 297 21 7076 22.5 12.0 17.2 1.2 7113 chr2L 8594456 intron,3` UTR Sema-1a +,CR43855 - chr2L 8598012 intron Sema-1a + chr2L 8601569 intron Sema-1a + chr2L_21_8595001 chr2L_8595001 RAL-304_100b 335 chr2L 8604946 8604956 chr2L 8605069 8605079 12 123 34.0 15.0 24.5 0.5 133 chr2L 8604946 intron Sema-1a + chr2L 8605012 intron Sema-1a + chr2L 8605079 intron Sema-1a + chr2L_12_8605001 chr2L_8605001 RAL-304_100b 336 chr2L 8604959 8605001 chr2L 8605067 8605114 36 119 12.5 14.0 13.2 2.5 155 chr2L 8604959 intron Sema-1a + chr2L 8605036 intron Sema-1a + chr2L 8605114 intron Sema-1a + chr2L_36_8605001 chr2L_8605001 RAL-304_100b 337 chr2L 8612831 8612870 chr2L 8612931 8612972 23 102 18.0 23.0 20.5 1.1 141 chr2L 8612831 intron Sema-1a + chr2L 8612902 intron Sema-1a + chr2L 8612972 intron Sema-1a + chr2L_23_8610001 chr2L_8610001 RAL-304_100b 338 chr2L 8648380 8648442 chr2L 8648828 8648873 73 441 16.5 14.0 15.2 4.5 493 chr2L 8648380 intron Sema-1a + chr2L 8648626 intron Sema-1a + chr2L 8648873 intron Sema-1a + chr2L_73_8645001 chr2L_8645001 RAL-304_100b 339 chr2L 8687057 8687071 chr2L 8687186 8687199 6 129 19.0 8.5 13.8 0.4 142 chr2L 8687057 intergenic Trs23 +,Hnf4 - chr2L 8687128 intergenic Trs23 +,Hnf4 - chr2L 8687199 intergenic Hnf4 -,Trs23 + chr2L_6_8685001 chr2L_8685001 RAL-304_100b 340 chr2L 8723088 8723143 chr2L 8731490 8731545 Tirant 45 8400 12.0 14.0 13.0 3.2 8457 chr2L 8723088 intron raw - chr2L 8727316 intron raw - chr2L 8731545 intron raw - chr2L_45_8725001 chr2L_8725001 RAL-304_100b 341 chr2L 8746156 8746201 chr2L 8746265 8746269 38 103 9.5 20.5 15.0 2.4 113 chr2L 8746156 intergenic not near genes chr2L 8746212 intergenic not near genes chr2L 8746269 intergenic not near genes chr2L_38_8745001 chr2L_8745001 RAL-304_100b 342 chr2L 8773578 8773583 chr2L 8778344 8778349 4 4766 91.0 77.0 84.0 0.0 4771 chr2L 8773578 exon CG9466 - chr2L 8775964 exon CG9466 - chr2L 8778349 exon CG9468 - chr2L_4_8775001 chr2L_8775001 RAL-304_100b 343 chr2L 8784609 8784650 chr2L 8784710 8784759 4 103 0.0 8.5 4.2 0.8 150 chr2L 8784609 intergenic not near genes chr2L 8784684 intergenic not near genes chr2L 8784759 intergenic not near genes chr2L_4_8780001 chr2L_8780001 RAL-304_100b 344 chr2L 8799783 8799832 chr2L 8799915 8799963 42 134 7.5 9.5 8.5 4.4 180 chr2L 8799783 intergenic not near genes chr2L 8799873 intergenic not near genes chr2L 8799963 intergenic not near genes chr2L_42_8795001 chr2L_8795001 RAL-304_100b 345 chr2L 8803151 8803211 chr2L 8803265 8803316 52 110 14.5 18.5 16.5 3.0 165 chr2L 8803151 intergenic not near genes chr2L 8803234 intergenic not near genes chr2L 8803316 intergenic not near genes chr2L_52_8800001 chr2L_8800001 RAL-304_100b 346 chr2L 8813840 8813860 chr2L 8813942 8813962 25 101 12.0 40.5 26.2 0.9 122 chr2L 8813840 intergenic not near genes chr2L 8813901 intergenic not near genes chr2L 8813962 intergenic not near genes chr2L_25_8810001 chr2L_8810001 RAL-304_100b 347 chr2L 8820905 8820955 chr2L 8821009 8821059 36 101 10.5 12.0 11.2 3.0 154 chr2L 8820905 intergenic not near genes chr2L 8820982 intergenic not near genes chr2L 8821059 intergenic not near genes chr2L_36_8820001 chr2L_8820001 RAL-304_100b 348 chr2L 8876595 8876643 chr2L 8876732 8876780 22 140 56.5 40.0 48.2 0.4 185 chr2L 8876595 intergenic not near genes chr2L 8876688 intergenic not near genes chr2L 8876780 intergenic not near genes chr2L_22_8875001 chr2L_8875001 RAL-304_100b 349 chr2L 8886656 8886657 chr2L 8886768 8886769 4 112 28.0 13.0 20.5 0.2 113 chr2L 8886656 intergenic CR44415 - chr2L 8886712 intergenic CR44415 - chr2L 8886769 intergenic CR44415 - chr2L_4_8885001 chr2L_8885001 RAL-304_100b 350 chr2L 8886664 8886708 chr2L 8886764 8886805 38 108 10.5 12.0 11.2 3.1 141 chr2L 8886664 intergenic CR44415 - chr2L 8886734 intergenic CR44415 - chr2L 8886805 intergenic CR44415 - chr2L_38_8885001 chr2L_8885001 RAL-304_100b 351 chr2L 8891849 8891904 chr2L 8891952 8892008 13 101 3.0 0.5 1.8 4.6 159 chr2L 8891849 exon CG42713 + chr2L 8891928 3` UTR CG42713 + chr2L 8892008 3` UTR CG42713 + chr2L_13_8890001 chr2L_8890001 RAL-304_100b 352 chr2L 8976206 8976250 chr2L 8976411 8976446 19 211 1.0 13.0 7.0 2.4 240 chr2L 8976206 intergenic not near genes chr2L 8976326 intergenic not near genes chr2L 8976446 intergenic not near genes chr2L_19_8975001 chr2L_8975001 RAL-304_100b 353 chr2L 9000259 9000269 chr2L 9007794 9007804 roo 11 7535 36.5 10.0 23.2 0.5 7545 chr2L 9000259 intergenic Try29F + chr2L 9004032 intergenic not near genes chr2L 9007804 intergenic not near genes chr2L_11_9000001 chr2L_9000001 RAL-304_100b 354 chr2L 9000274 9000310 chr2L 9007792 9007805 roo 24 7531 19.5 9.0 14.2 1.6 7531 chr2L 9000274 intergenic Try29F + chr2L 9004040 intergenic not near genes chr2L 9007805 intergenic not near genes chr2L_24_9000001 chr2L_9000001 RAL-304_100b 355 chr2L 9015012 9015029 chr2L 9015124 9015136 12 112 16.5 3.0 9.8 1.1 124 chr2L 9015012 intergenic not near genes chr2L 9015074 intergenic not near genes chr2L 9015136 intergenic not near genes chr2L_12_9015001 chr2L_9015001 RAL-304_100b 356 chr2L 9027744 9027776 chr2L 9028053 9028075 22 307 20.0 10.0 15.0 1.4 331 chr2L 9027744 intron,intron CG9582 -,CR44352 - chr2L 9027910 intron,intron CG9582 -,CR44352 - chr2L 9028075 intron,intron CG9582 -,CR44352 - chr2L_22_9025001 chr2L_9025001 RAL-304_100b 357 chr2L 9027778 9027797 chr2L 9028051 9028053 9 295 9.5 9.5 9.5 0.9 275 chr2L 9027778 intron,intron CG9582 -,CR44352 - chr2L 9027916 intron,intron CG9582 -,CR44352 - chr2L 9028053 intron,intron CG9582 -,CR44352 - chr2L_9_9025001 chr2L_9025001 RAL-304_100b 358 chr2L 9049595 9049617 chr2L 9049700 9049728 11 110 3.5 15.0 9.2 1.1 133 chr2L 9049595 intergenic not near genes chr2L 9049662 intergenic not near genes chr2L 9049728 intergenic not near genes chr2L_11_9045001 chr2L_9045001 RAL-304_100b 359 chr2L 9049619 9049625 chr2L 9049698 9049736 10 102 3.5 14.0 8.8 1.0 117 chr2L 9049619 intergenic not near genes chr2L 9049678 intergenic not near genes chr2L 9049736 intergenic not near genes chr2L_10_9045001 chr2L_9045001 RAL-304_100b 360 chr2L 9084336 9084340 chr2L 16217660 16217660 34 7133321 93.0 75.0 84.0 0.4 7133324 chr2L 9084336 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_34_12650001 chr2L_12650001 RAL-304_100b 361 chr2L 9114344 9114401 chr2L 9114509 9114566 47 161 12.0 6.0 9.0 4.7 222 chr2L 9114344 intergenic not near genes chr2L 9114455 intergenic not near genes chr2L 9114566 intergenic not near genes chr2L_47_9110001 chr2L_9110001 RAL-304_100b 362 chr2L 9152120 9152163 chr2L 9152265 9152315 13 150 0.5 10.0 5.2 2.1 195 chr2L 9152120 intron CG32982 + chr2L 9152218 intron CG32982 + chr2L 9152315 intron CG32982 + chr2L_13_9150001 chr2L_9150001 RAL-304_100b 363 chr2L 9154873 9154903 chr2L 9154967 9155005 24 102 0.5 7.0 3.8 5.0 132 chr2L 9154873 intron CG32982 + chr2L 9154939 intron CG32982 + chr2L 9155005 intron CG32982 + chr2L_24_9150001 chr2L_9150001 RAL-304_100b 364 chr2L 9158769 9158787 chr2L 9158891 9158901 16 122 15.0 0.0 7.5 1.9 132 chr2L 9158769 intron CG32982 + chr2L 9158835 intron CG32982 + chr2L 9158901 intron CG32982 + chr2L_16_9155001 chr2L_9155001 RAL-304_100b 365 chr2L 9173049 9173094 chr2L 9173151 9173196 26 100 7.5 7.5 7.5 3.1 147 chr2L 9173049 intron tai + chr2L 9173122 intron tai + chr2L 9173196 intron tai + chr2L_26_9170001 chr2L_9170001 RAL-304_100b 366 chr2L 9195838 9195882 chr2L 9195931 9195990 21 106 13.5 9.0 11.2 1.7 152 chr2L 9195838 intron tai + chr2L 9195914 intron tai + chr2L 9195990 intron tai + chr2L_21_9195001 chr2L_9195001 RAL-304_100b 367 chr2L 9202031 9202088 chr2L 9202132 9202179 61 93 16.5 32.0 24.2 2.4 148 chr2L 9202031 intron tai + chr2L 9202105 intron tai + chr2L 9202179 intron tai + chr2L_61_9200001 chr2L_9200001 RAL-304_100b 368 chr2L 9217952 9217987 chr2L 9222759 9222799 Doc 26 4811 15.5 15.0 15.2 1.6 4847 chr2L 9217952 intron tai + chr2L 9220376 intron tai + chr2L 9222799 intron tai + chr2L_26_9220001 chr2L_9220001 RAL-304_100b 369 chr2L 9217988 9217995 chr2L 9222750 9222801 Doc 6 4802 14.0 11.0 12.5 0.4 4813 chr2L 9217988 intron tai + chr2L 9220394 intron tai + chr2L 9222801 intron tai + chr2L_6_9220001 chr2L_9220001 RAL-304_100b 370 chr2L 9225836 9225881 chr2L 9225941 9225996 24 113 6.5 10.5 8.5 2.5 160 chr2L 9225836 intron tai + chr2L 9225916 intron tai + chr2L 9225996 intron tai + chr2L_24_9225001 chr2L_9225001 RAL-304_100b 371 chr2L 9278864 9278919 chr2L 9278979 9279034 55 113 10.0 0.0 5.0 9.2 170 chr2L 9278864 intron Ggamma30A + chr2L 9278949 intron Ggamma30A + chr2L 9279034 intron Ggamma30A + chr2L_55_9275001 chr2L_9275001 RAL-304_100b 372 chr2L 9283199 9283437 chr2L 9283317 9283518 70 109 3.0 0.0 1.5 28.0 319 chr2L 9283199 intron Ggamma30A + chr2L 9283358 intron Ggamma30A + chr2L 9283518 intron Ggamma30A + chr2L_70_9280001 chr2L_9280001 RAL-304_100b 373 chr2L 9303490 9303548 chr2L 9303595 9303648 42 104 5.5 11.0 8.2 4.6 158 chr2L 9303490 intergenic not near genes chr2L 9303569 intergenic not near genes chr2L 9303648 intergenic not near genes chr2L_42_9300001 chr2L_9300001 RAL-304_100b 374 chr2L 9334988 9335023 chr2L 9335092 9335127 16 104 8.5 2.5 5.5 2.5 139 chr2L 9334988 intron Eaat1 + chr2L 9335058 intron Eaat1 + chr2L 9335127 intron Eaat1 + chr2L_16_9335001 chr2L_9335001 RAL-304_100b 375 chr2L 9367573 9367573 chr2L 9367649 9367675 4 91 4.0 30.5 17.2 0.2 102 chr2L 9367573 intergenic CG34181 + chr2L 9367624 intergenic CG34181 + chr2L 9367675 5` UTR CG34181 + chr2L_4_9365001 chr2L_9365001 RAL-304_100b 376 chr2L 9380218 9380254 chr2L 9380338 9380344 29 117 21.0 12.0 16.5 1.7 126 chr2L 9380218 exon Shawl - chr2L 9380281 intron Shawl - chr2L 9380344 intron Shawl - chr2L_29_9380001 chr2L_9380001 RAL-304_100b 377 chr2L 9387225 9387244 chr2L 9387348 9387367 5 122 13.5 4.5 9.0 0.5 142 chr2L 9387225 intron Shawl - chr2L 9387296 intron Shawl - chr2L 9387367 intron Shawl - chr2L_5_9385001 chr2L_9385001 RAL-304_100b 378 chr2L 9393488 9393530 chr2L 9396475 9396521 jockey 33 2987 0.0 18.5 9.2 3.2 3033 chr2L 9393488 intron Shawl - chr2L 9395004 intron Shawl - chr2L 9396521 intron Shawl - chr2L_33_9395001 chr2L_9395001 RAL-304_100b 379 chr2L 9407883 9407905 chr2L 9407990 9408012 15 106 10.5 16.5 13.5 1.0 129 chr2L 9407883 intron Shawl - chr2L 9407948 intron Shawl - chr2L 9408012 intron Shawl - chr2L_15_9405001 chr2L_9405001 RAL-304_100b 380 chr2L 9443034 9443093 chr2L 9443173 9443232 46 135 7.5 11.0 9.2 4.5 198 chr2L 9443034 intron numb + chr2L 9443133 intron numb + chr2L 9443232 intron numb + chr2L_46_9440001 chr2L_9440001 RAL-304_100b 381 chr2L 9451026 9451065 chr2L 9451153 9451184 12 126 0.5 17.0 8.8 1.2 158 chr2L 9451026 intron numb + chr2L 9451105 intron numb + chr2L 9451184 intron numb + chr2L_12_9450001 chr2L_9450001 RAL-304_100b 382 chr2L 9454951 9455007 chr2L 9455078 9455133 44 125 9.5 13.0 11.2 3.6 182 chr2L 9454951 intron numb + chr2L 9455042 intron numb + chr2L 9455133 intron numb + chr2L_44_9455001 chr2L_9455001 RAL-304_100b 383 chr2L 9488548 9488577 chr2L 9488654 9488683 36 99 40.0 40.5 40.2 0.9 135 chr2L 9488548 intergenic not near genes chr2L 9488616 intergenic not near genes chr2L 9488683 intergenic not near genes chr2L_36_9485001 chr2L_9485001 RAL-304_100b 384 chr2L 9490496 9490506 chr2L 9490601 9490611 6 105 38.0 13.0 25.5 0.2 115 chr2L 9490496 intergenic not near genes chr2L 9490554 intergenic not near genes chr2L 9490611 intergenic not near genes chr2L_6_9490001 chr2L_9490001 RAL-304_100b 385 chr2L 9490507 9490552 chr2L 9490600 9490657 36 101 12.5 12.5 12.5 2.7 150 chr2L 9490507 intergenic not near genes chr2L 9490582 intergenic not near genes chr2L 9490657 intergenic not near genes chr2L_36_9490001 chr2L_9490001 RAL-304_100b 386 chr2L 9506343 9506366 chr2L 9506450 9506473 9 107 8.5 9.5 9.0 0.9 130 chr2L 9506343 intron CG33298 + chr2L 9506408 intron CG33298 + chr2L 9506473 intron CG33298 + chr2L_9_9505001 chr2L_9505001 RAL-304_100b 387 chr2L 9532012 9532036 chr2L 9532122 9532146 18 108 23.5 7.0 15.2 1.1 134 chr2L 9532012 intron Oatp30B + chr2L 9532079 intron Oatp30B + chr2L 9532146 intron Oatp30B + chr2L_18_9530001 chr2L_9530001 RAL-304_100b 388 chr2L 9532042 9532053 chr2L 9532117 9532162 8 100 18.5 4.5 11.5 0.6 120 chr2L 9532042 intron Oatp30B + chr2L 9532102 intron Oatp30B + chr2L 9532162 intron Oatp30B + chr2L_8_9530001 chr2L_9530001 RAL-304_100b 389 chr2L 9618868 9618914 chr2L 9618970 9619016 37 101 14.5 8.5 11.5 3.0 148 chr2L 9618868 intron GlcAT-S + chr2L 9618942 intron GlcAT-S + chr2L 9619016 intron GlcAT-S + chr2L_37_9615001 chr2L_9615001 RAL-304_100b 390 chr2L 9712677 9712733 chr2L 9712798 9712849 42 119 4.5 6.5 5.5 6.5 172 chr2L 9712677 3` UTR Nckx30C - chr2L 9712763 3` UTR Nckx30C - chr2L 9712849 3` UTR Nckx30C - chr2L_42_9710001 chr2L_9710001 RAL-304_100b 391 chr2L 9719752 9719759 chr2L 9719860 9719867 4 108 1.0 9.0 5.0 0.7 115 chr2L 9719752 intron Nckx30C - chr2L 9719810 intron Nckx30C - chr2L 9719867 intron Nckx30C - chr2L_4_9715001 chr2L_9715001 RAL-304_100b 392 chr2L 9719766 9719777 chr2L 9719859 9719885 5 105 0.5 9.0 4.8 0.9 119 chr2L 9719766 intron Nckx30C - chr2L 9719826 intron Nckx30C - chr2L 9719885 intron Nckx30C - chr2L_5_9715001 chr2L_9715001 RAL-304_100b 393 chr2L 9770747 9770763 chr2L 9770877 9770893 14 129 9.0 18.0 13.5 1.0 146 chr2L 9770747 intron ppk18 - chr2L 9770820 intron ppk18 - chr2L 9770893 exon ppk18 - chr2L_14_9770001 chr2L_9770001 RAL-304_100b 394 chr2L 9821560 9821576 chr2L 9822014 9822028 7 454 27.0 20.5 23.8 0.3 468 chr2L 9821560 intron nAChRalpha6 - chr2L 9821794 intron nAChRalpha6 - chr2L 9822028 intron nAChRalpha6 - chr2L_7_9820001 chr2L_9820001 RAL-304_100b 395 chr2L 9821579 9821613 chr2L 9822013 9822064 37 446 10.5 20.0 15.2 2.3 485 chr2L 9821579 intron nAChRalpha6 - chr2L 9821822 intron nAChRalpha6 - chr2L 9822064 intron nAChRalpha6 - chr2L_37_9820001 chr2L_9820001 RAL-304_100b 396 chr2L 9837409 9837446 chr2L 9837512 9837549 12 102 3.0 5.5 4.2 2.3 140 chr2L 9837409 intron nAChRalpha6 - chr2L 9837479 intron nAChRalpha6 - chr2L 9837549 intron nAChRalpha6 - chr2L_12_9835001 chr2L_9835001 RAL-304_100b 397 chr2L 9861590 9861626 chr2L 9861802 9861838 56 209 26.5 21.5 24.0 2.2 248 chr2L 9861590 intron nAChRalpha6 - chr2L 9861714 intron nAChRalpha6 - chr2L 9861838 intron nAChRalpha6 - chr2L_56_9860001 chr2L_9860001 RAL-304_100b 398 chr2L 9861629 9861648 chr2L 9861800 9861860 33 204 16.5 20.5 18.5 1.7 231 chr2L 9861629 intron nAChRalpha6 - chr2L 9861744 intron nAChRalpha6 - chr2L 9861860 intron nAChRalpha6 - chr2L_33_9860001 chr2L_9860001 RAL-304_100b 399 chr2L 9862344 9862358 chr2L 9862477 9862491 4 133 0.0 32.0 16.0 0.2 147 chr2L 9862344 intron nAChRalpha6 - chr2L 9862418 intron nAChRalpha6 - chr2L 9862491 intron nAChRalpha6 - chr2L_4_9860001 chr2L_9860001 RAL-304_100b 400 chr2L 9871500 9871518 chr2L 9871609 9871627 14 109 14.5 11.0 12.8 1.0 127 chr2L 9871500 intron nAChRalpha6 - chr2L 9871564 intron nAChRalpha6 - chr2L 9871627 intron nAChRalpha6 - chr2L_14_9870001 chr2L_9870001 RAL-304_100b 401 chr2L 9871521 9871534 chr2L 9871608 9871643 14 106 8.0 11.0 9.5 1.3 122 chr2L 9871521 intron nAChRalpha6 - chr2L 9871582 intron nAChRalpha6 - chr2L 9871643 intron nAChRalpha6 - chr2L_14_9870001 chr2L_9870001 RAL-304_100b 402 chr2L 9902369 9902371 chr2L 9902875 9902887 5 513 244.0 13.5 128.8 0.0 518 chr2L 9902369 exon Muc30E - chr2L 9902628 exon Muc30E - chr2L 9902887 exon Muc30E - chr2L_5_9900001 chr2L_9900001 RAL-304_100b 403 chr2L 9973703 9973716 chr2L 9980847 9980860 HMS-Beagle 6 7144 40.0 21.0 30.5 0.2 7157 chr2L 9973703 intergenic not near genes chr2L 9977282 intergenic not near genes chr2L 9980860 intergenic not near genes chr2L_6_9975001 chr2L_9975001 RAL-304_100b 404 chr2L 9973718 9973759 chr2L 9980846 9980863 HMS-Beagle 40 7134 18.0 20.5 19.2 2.0 7145 chr2L 9973718 intergenic not near genes chr2L 9977290 intergenic not near genes chr2L 9980863 intergenic not near genes chr2L_40_9975001 chr2L_9975001 RAL-304_100b 405 chr2L 10051710 10051714 chr2L 10051820 10051824 4 110 42.5 27.0 34.8 0.1 114 chr2L 10051710 5` UTR CR44874 + chr2L 10051767 5` UTR CR44874 + chr2L 10051824 5` UTR CR44874 + chr2L_4_10050001 chr2L_10050001 RAL-304_100b 406 chr2L 10051718 10051727 chr2L 10051812 10051830 8 105 35.0 21.0 28.0 0.3 112 chr2L 10051718 5` UTR CR44874 + chr2L 10051774 5` UTR CR44874 + chr2L 10051830 5` UTR CR44874 + chr2L_8_10050001 chr2L_10050001 RAL-304_100b 407 chr2L 10051732 10051738 chr2L 10051811 10051843 13 92 27.5 19.5 23.5 0.5 111 chr2L 10051732 5` UTR CR44874 + chr2L 10051788 5` UTR CR44874 + chr2L 10051843 5` UTR CR44874 + chr2L_13_10050001 chr2L_10050001 RAL-304_100b 408 chr2L 10051739 10051753 chr2L 10051809 10051850 27 96 17.5 18.5 18.0 1.4 111 chr2L 10051739 5` UTR CR44874 + chr2L 10051794 5` UTR CR44874 + chr2L 10051850 5` UTR CR44874 + chr2L_27_10050001 chr2L_10050001 RAL-304_100b 409 chr2L 10087453 10087459 chr2L 10087555 10087561 7 102 54.5 36.5 45.5 0.2 108 chr2L 10087453 intron CG44153 - chr2L 10087507 intron CG44153 - chr2L 10087561 intron CG44153 - chr2L_7_10085001 chr2L_10085001 RAL-304_100b 410 chr2L 10087461 10087488 chr2L 10087552 10087589 28 99 33.0 34.5 33.8 0.8 128 chr2L 10087461 intron CG44153 - chr2L 10087525 intron CG44153 - chr2L 10087589 intron CG44153 - chr2L_28_10085001 chr2L_10085001 RAL-304_100b 411 chr2L 10094264 10094322 chr2L 10094464 10094522 60 196 13.5 17.5 15.5 3.6 258 chr2L 10094264 intron CG44153 - chr2L 10094393 intron CG44153 - chr2L 10094522 intron CG44153 - chr2L_60_10090001 chr2L_10090001 RAL-304_100b 412 chr2L 10095610 10095661 chr2L 10095715 10095766 27 102 13.5 13.5 13.5 1.9 156 chr2L 10095610 intron CG44153 - chr2L 10095688 intron CG44153 - chr2L 10095766 intron CG44153 - chr2L_27_10095001 chr2L_10095001 RAL-304_100b 413 chr2L 10105268 10105277 chr2L 10105369 10105378 6 101 26.5 8.0 17.2 0.3 110 chr2L 10105268 intron,intron CG44153 -,CG34109 + chr2L 10105323 intron,intron CG44153 -,CG34109 + chr2L 10105378 intron,intron CG44153 -,CG34109 + chr2L_6_10105001 chr2L_10105001 RAL-304_100b 414 chr2L 10105280 10105314 chr2L 10105357 10105400 34 96 13.0 7.0 10.0 3.1 120 chr2L 10105280 intron,intron CG44153 -,CG34109 + chr2L 10105340 intron,intron CG44153 -,CG34109 + chr2L 10105400 intron,intron CG44153 -,CG34109 + chr2L_34_10105001 chr2L_10105001 RAL-304_100b 415 chr2L 10108959 10109014 chr2L 10109062 10109065 60 101 17.0 17.5 17.2 3.3 106 chr2L 10108959 intron,intron CG44153 -,CG34109 + chr2L 10109012 intron,intron CG44153 -,CG34109 + chr2L 10109065 intron,intron CG44153 -,CG34109 + chr2L_60_10105001 chr2L_10105001 RAL-304_100b 416 chr2L 10138164 10138186 chr2L 10143435 10143446 Rt1c 13 5267 22.0 39.0 30.5 0.4 5282 chr2L 10138164 intron CG44153 - chr2L 10140805 intron CG44153 - chr2L 10143446 intron CG44153 - chr2L_13_10140001 chr2L_10140001 RAL-304_100b 417 chr2L 10153187 10153195 chr2L 10153291 10153299 6 104 42.0 29.5 35.8 0.2 112 chr2L 10153187 intron,exon CG44153 -,CG4839 + chr2L 10153243 intron,intron CG44153 -,CG4839 + chr2L 10153299 intron,intron CG44153 -,CG4839 + chr2L_6_10150001 chr2L_10150001 RAL-304_100b 418 chr2L 10153196 10153237 chr2L 10153280 10153333 57 96 18.5 20.0 19.2 2.8 137 chr2L 10153196 intron,exon CG44153 -,CG4839 + chr2L 10153264 intron,intron CG44153 -,CG4839 + chr2L 10153333 intron,exon CG44153 -,CG4839 + chr2L_57_10150001 chr2L_10150001 RAL-304_100b 419 chr2L 10156297 10156305 chr2L 10163792 10163800 blood 7 7495 38.0 16.0 27.0 0.2 7503 chr2L 10156297 intron,3` UTR CG44153 -,CG4839 + chr2L 10160048 intron CG44153 - chr2L 10163800 intron CG44153 - chr2L_7_10160001 chr2L_10160001 RAL-304_100b 420 chr2L 10156306 10156355 chr2L 10163791 10163833 blood 35 7491 15.5 16.0 15.8 2.1 7527 chr2L 10156306 intron,3` UTR CG44153 -,CG4839 + chr2L 10160070 intron CG44153 - chr2L 10163833 intron CG44153 - chr2L_35_10160001 chr2L_10160001 RAL-304_100b 421 chr2L 10176024 10176024 chr2L 16071771 16071771 12 5895747 75.5 88.5 82.0 0.1 5895747 chr2L 10176024 intron CG44153 - chr2L 13123898 intergenic not near genes chr2L 16071771 intron beat-Ia + chr2L_12_13120001 chr2L_13120001 RAL-304_100b 422 chr2L 10176024 10176024 chr2L 16217660 16217660 4 6041636 75.5 75.0 75.2 0.1 6041636 chr2L 10176024 intron CG44153 - chr2L 13196842 3` UTR Edem2 + chr2L 16217660 intergenic not near genes chr2L_4_13195001 chr2L_13195001 RAL-304_100b 423 chr2L 10177384 10177396 chr2L 10177489 10177501 8 105 8.5 9.0 8.8 0.8 117 chr2L 10177384 intron CG44153 - chr2L 10177442 intron CG44153 - chr2L 10177501 intron CG44153 - chr2L_8_10175001 chr2L_10175001 RAL-304_100b 424 chr2L 10209826 10209843 chr2L 10209928 10209945 4 102 11.5 2.5 7.0 0.5 119 chr2L 10209826 intergenic CG5727 -,CR44845 +,CG5731 - chr2L 10209886 3` UTR CG5727 - chr2L 10209945 3` UTR CG5727 - chr2L_4_10205001 chr2L_10205001 RAL-304_100b 425 chr2L 10227498 10227556 chr2L 10227599 10227657 49 98 10.0 11.0 10.5 4.3 159 chr2L 10227498 intergenic CG5694 - chr2L 10227578 intergenic CG5694 - chr2L 10227657 intergenic CG5694 - chr2L_49_10225001 chr2L_10225001 RAL-304_100b 426 chr2L 10281683 10281687 chr2L 10281814 10281818 4 131 0.0 17.5 8.8 0.4 135 chr2L 10281683 intergenic CG5604 - chr2L 10281750 intergenic CG5604 - chr2L 10281818 intergenic CG5604 - chr2L_4_10280001 chr2L_10280001 RAL-304_100b 427 chr2L 10294138 10294195 chr2L 10294240 10294273 14 101 2.0 3.5 2.8 3.7 135 chr2L 10294138 intron Hand - chr2L 10294206 intron Hand - chr2L 10294273 intron Hand - chr2L_14_10290001 chr2L_10290001 RAL-304_100b 428 chr2L 10421264 10421320 chr2L 10421378 10421388 24 94 22.5 11.5 17.0 1.3 124 chr2L 10421264 exon pie - chr2L 10421326 exon pie - chr2L 10421388 exon pie - chr2L_24_10420001 chr2L_10420001 RAL-304_100b 429 chr2L 10447073 10447077 chr2L 10447208 10447212 4 135 6.0 8.0 7.0 0.5 139 chr2L 10447073 intron loh + chr2L 10447142 intron loh + chr2L 10447212 intron loh + chr2L_4_10445001 chr2L_10445001 RAL-304_100b 430 chr2L 10447082 10447089 chr2L 10447202 10447224 5 132 4.5 8.0 6.2 0.7 142 chr2L 10447082 intron loh + chr2L 10447153 intron loh + chr2L 10447224 intron loh + chr2L_5_10445001 chr2L_10445001 RAL-304_100b 431 chr2L 10458188 10458215 chr2L 10458309 10458336 14 118 0.0 11.0 5.5 2.2 148 chr2L 10458188 intron LM408 + chr2L 10458262 intron LM408 + chr2L 10458336 intron LM408 + chr2L_14_10455001 chr2L_10455001 RAL-304_100b 432 chr2L 10474358 10474414 chr2L 10474464 10474519 30 100 14.5 7.5 11.0 2.5 161 chr2L 10474358 intergenic RluA-1 - chr2L 10474438 intergenic RluA-1 - chr2L 10474519 intergenic RluA-1 - chr2L_30_10470001 chr2L_10470001 RAL-304_100b 433 chr2L 10480290 10480333 chr2L 10480393 10480418 31 103 3.5 0.0 1.8 11.1 128 chr2L 10480290 intron RluA-2 + chr2L 10480354 intron RluA-2 + chr2L 10480418 intron RluA-2 + chr2L_31_10480001 chr2L_10480001 RAL-304_100b 434 chr2L 10495282 10495293 chr2L 10495384 10495395 9 102 29.0 11.5 20.2 0.4 113 chr2L 10495282 intron Myo31DF - chr2L 10495338 intron Myo31DF - chr2L 10495395 intron Myo31DF - chr2L_9_10495001 chr2L_10495001 RAL-304_100b 435 chr2L 10495295 10495465 chr2L 10495382 10495571 26 106 6.5 11.5 9.0 2.6 276 chr2L 10495295 intron Myo31DF - chr2L 10495433 intron Myo31DF - chr2L 10495571 intron Myo31DF - chr2L_26_10495001 chr2L_10495001 RAL-304_100b 436 chr2L 10515338 10515388 chr2L 10515456 10515506 36 116 9.5 7.0 8.2 3.9 168 chr2L 10515338 intron,intron CG45083 -,Fatp - chr2L 10515422 intron,intron CG45083 -,Fatp - chr2L 10515506 intron,intron CG45083 -,Fatp - chr2L_36_10515001 chr2L_10515001 RAL-304_100b 437 chr2L 10519490 10519495 chr2L 10519768 10519780 4 281 1.0 9.5 5.2 0.6 290 chr2L 10519490 intergenic Lrr47 + chr2L 10519635 intergenic Lrr47 + chr2L 10519780 intergenic not near genes chr2L_4_10515001 chr2L_10515001 RAL-304_100b 438 chr2L 10519496 10519508 chr2L 10519766 10519769 11 280 1.0 9.0 5.0 1.8 273 chr2L 10519496 intergenic Lrr47 + chr2L 10519632 intergenic Lrr47 + chr2L 10519769 intergenic Lrr47 + chr2L_11_10515001 chr2L_10515001 RAL-304_100b 439 chr2L 10521059 10521065 chr2L 10521160 10521166 5 101 35.5 12.0 23.8 0.2 107 chr2L 10521059 intergenic not near genes chr2L 10521112 intergenic not near genes chr2L 10521166 intergenic not near genes chr2L_5_10520001 chr2L_10520001 RAL-304_100b 440 chr2L 10521067 10521085 chr2L 10521159 10521171 22 96 27.5 12.0 19.8 1.1 104 chr2L 10521067 intergenic not near genes chr2L 10521119 intergenic not near genes chr2L 10521171 intergenic not near genes chr2L_22_10520001 chr2L_10520001 RAL-304_100b 441 chr2L 10521087 10521115 chr2L 10521157 10521188 28 92 16.5 13.0 14.8 1.8 101 chr2L 10521087 intergenic not near genes chr2L 10521138 intergenic not near genes chr2L 10521188 intergenic not near genes chr2L_28_10520001 chr2L_10520001 RAL-304_100b 442 chr2L 10531602 10531643 chr2L 10531719 10531760 15 116 0.0 10.0 5.0 2.5 158 chr2L 10531602 3` UTR Lip4 + chr2L 10531681 3` UTR Lip4 + chr2L 10531760 3` UTR Lip4 + chr2L_15_10530001 chr2L_10530001 RAL-304_100b 443 chr2L 10540845 10540872 chr2L 10540948 10540975 9 102 7.0 0.5 3.8 1.9 130 chr2L 10540845 intergenic not near genes chr2L 10540910 intergenic not near genes chr2L 10540975 intergenic not near genes chr2L_9_10540001 chr2L_10540001 RAL-304_100b 444 chr2L 10574543 10574599 chr2L 10574665 10574721 38 120 12.5 14.0 13.2 2.7 178 chr2L 10574543 intron Trim9 + chr2L 10574632 intron Trim9 + chr2L 10574721 intron Trim9 + chr2L_38_10570001 chr2L_10570001 RAL-304_100b 445 chr2L 10592822 10592874 chr2L 10600502 10600541 opus 48 7683 6.0 5.5 5.8 7.1 7719 chr2L 10592822 intron Trim9 + chr2L 10596682 intron Trim9 + chr2L 10600541 intron Trim9 + chr2L_48_10595001 chr2L_10595001 RAL-304_100b 446 chr2L 10604170 10604221 chr2L 10604279 10604328 19 106 13.5 3.5 8.5 2.0 158 chr2L 10604170 intron Trim9 + chr2L 10604249 intron Trim9 + chr2L 10604328 intron Trim9 + chr2L_19_10600001 chr2L_10600001 RAL-304_100b 447 chr2L 10631185 10631222 chr2L 10631342 10631374 14 156 10.5 0.0 5.2 2.3 189 chr2L 10631185 intron CG7329 - chr2L 10631280 intron CG7329 - chr2L 10631374 intron CG7329 - chr2L_14_10630001 chr2L_10630001 RAL-304_100b 448 chr2L 10688521 10688568 chr2L 10688622 10688632 19 98 0.0 2.0 1.0 9.5 111 chr2L 10688521 intergenic CG7294 - chr2L 10688576 intergenic CG7294 - chr2L 10688632 intergenic CG7294 - chr2L_19_10685001 chr2L_10685001 RAL-304_100b 449 chr2L 10698105 10698159 chr2L 10698212 10698267 35 107 12.0 5.0 8.5 3.7 162 chr2L 10698105 5` UTR CR44181 + chr2L 10698186 5` UTR CR44181 + chr2L 10698267 intergenic CR44181 +,CG7300 - chr2L_35_10695001 chr2L_10695001 RAL-304_100b 450 chr2L 10698560 10698594 chr2L 10698668 10698712 10 114 0.0 11.0 5.5 1.5 152 chr2L 10698560 intergenic CR44181 + chr2L 10698636 intergenic CR44181 + chr2L 10698712 intergenic not near genes chr2L_10_10695001 chr2L_10695001 RAL-304_100b 451 chr2L 10704891 10704948 chr2L 10705011 10705068 36 119 18.0 8.5 13.2 2.5 177 chr2L 10704891 intron,exon Lip2 -,CG6415 + chr2L 10704980 intron Lip2 - chr2L 10705068 exon Lip2 - chr2L_36_10700001 chr2L_10700001 RAL-304_100b 452 chr2L 10705425 10705460 chr2L 10705533 10705568 39 95 28.5 18.0 23.2 1.6 143 chr2L 10705425 exon Lip2 - chr2L 10705496 exon Lip2 - chr2L 10705568 intron Lip2 - chr2L_39_10705001 chr2L_10705001 RAL-304_100b 453 chr2L 10705461 10705480 chr2L 10705531 10705587 34 94 16.0 17.5 16.8 1.9 126 chr2L 10705461 exon Lip2 - chr2L 10705524 intron Lip2 - chr2L 10705587 intron Lip2 - chr2L_34_10705001 chr2L_10705001 RAL-304_100b 454 chr2L 10723516 10723542 chr2L 10723635 10723660 11 118 6.0 3.5 4.8 1.9 144 chr2L 10723516 intergenic not near genes chr2L 10723588 intergenic not near genes chr2L 10723660 intergenic not near genes chr2L_11_10720001 chr2L_10720001 RAL-304_100b 455 chr2L 10787937 10787948 chr2L 16246807 16246807 4 5458866 17.5 34.5 26.0 0.1 5458870 chr2L 10787937 intron CG31869 - chr2L 13517372 intron B4 - chr2L 16246807 3` UTR PRL-1 - chr2L_4_13515001 chr2L_13515001 RAL-304_100b 456 chr2L 10787958 10788029 chr2L 10788076 10788130 16 96 1.5 14.5 8.0 1.8 172 chr2L 10787958 intron CG31869 - chr2L 10788044 intron CG31869 - chr2L 10788130 intron CG31869 - chr2L_16_10785001 chr2L_10785001 RAL-304_100b 457 chr2L 10836749 10836764 chr2L 10836841 10836867 4 100 10.0 6.0 8.0 0.4 118 chr2L 10836749 intron Nos - chr2L 10836808 intron Nos - chr2L 10836867 intron Nos - chr2L_4_10835001 chr2L_10835001 RAL-304_100b 458 chr2L 10836769 10836779 chr2L 10836838 10836882 7 97 6.5 5.5 6.0 1.0 113 chr2L 10836769 intron Nos - chr2L 10836826 intron Nos - chr2L 10836882 intron Nos - chr2L_7_10835001 chr2L_10835001 RAL-304_100b 459 chr2L 10862833 10862857 chr2L 10864459 10864496 Rt1c 29 1630 16.5 31.0 23.8 1.2 1663 chr2L 10862833 3` UTR CR43807 - chr2L 10863664 intron CR43807 - chr2L 10864496 3` UTR CR43807 - chr2L_29_10860001 chr2L_10860001 RAL-304_100b 460 chr2L 10862862 10862877 chr2L 10864455 10864497 Rt1c 19 1627 10.0 26.0 18.0 1.0 1635 chr2L 10862862 3` UTR CR43807 - chr2L 10863680 intron CR43807 - chr2L 10864497 3` UTR CR43807 - chr2L_19_10860001 chr2L_10860001 RAL-304_100b 461 chr2L 10876552 10876572 chr2L 10883631 10883653 297 10 7079 16.0 4.0 10.0 0.9 7101 chr2L 10876552 intergenic not near genes chr2L 10880102 intergenic not near genes chr2L 10883653 intergenic not near genes chr2L_10_10880001 chr2L_10880001 RAL-304_100b 462 chr2L 10946929 10946933 chr2L 10956166 10956173 roo 4 9239 62.0 34.5 48.2 0.1 9244 chr2L 10946929 intron dpr2 - chr2L 10951551 intron dpr2 - chr2L 10956173 intron dpr2 - chr2L_4_10950001 chr2L_10950001 RAL-304_100b 463 chr2L 10946935 10946951 chr2L 10956165 10956191 roo 23 9238 52.5 33.0 42.8 0.5 9256 chr2L 10946935 intron dpr2 - chr2L 10951563 intron dpr2 - chr2L 10956191 intron dpr2 - chr2L_23_10950001 chr2L_10950001 RAL-304_100b 464 chr2L 10946952 10946962 chr2L 10956162 10956199 roo 22 9232 45.0 30.5 37.8 0.6 9247 chr2L 10946952 intron dpr2 - chr2L 10951576 intron dpr2 - chr2L 10956199 intron dpr2 - chr2L_22_10950001 chr2L_10950001 RAL-304_100b 465 chr2L 10946963 10946971 chr2L 10956160 10956211 roo 8 9233 43.0 29.0 36.0 0.2 9248 chr2L 10946963 intron dpr2 - chr2L 10951587 intron dpr2 - chr2L 10956211 intron dpr2 - chr2L_8_10950001 chr2L_10950001 RAL-304_100b 466 chr2L 11012273 11012329 chr2L 11012386 11012421 23 108 5.5 11.5 8.5 2.4 148 chr2L 11012273 intergenic dUTPase + chr2L 11012347 intergenic dUTPase + chr2L 11012421 intergenic dUTPase + chr2L_23_11010001 chr2L_11010001 RAL-304_100b 467 chr2L 11055038 11055075 chr2L 11055148 11055185 18 110 7.0 11.5 9.2 1.8 147 chr2L 11055038 intron Samuel - chr2L 11055112 intron Samuel - chr2L 11055185 intron Samuel - chr2L_18_11055001 chr2L_11055001 RAL-304_100b 468 chr2L 11056202 11056240 chr2L 11056341 11056378 14 137 5.0 4.5 4.8 2.4 176 chr2L 11056202 intron Samuel - chr2L 11056290 intron Samuel - chr2L 11056378 intron Samuel - chr2L_14_11055001 chr2L_11055001 RAL-304_100b 469 chr2L 11169449 11169502 chr2L 11169609 11169662 49 158 11.0 10.5 10.8 4.2 213 chr2L 11169449 intron Ca-beta - chr2L 11169556 intron Ca-beta - chr2L 11169662 intron Ca-beta - chr2L_49_11165001 chr2L_11165001 RAL-304_100b 470 chr2L 11183759 11183812 chr2L 11183880 11183933 24 120 10.5 10.0 10.2 2.1 174 chr2L 11183759 intron Ca-beta - chr2L 11183846 intron Ca-beta - chr2L 11183933 intron Ca-beta - chr2L_24_11180001 chr2L_11180001 RAL-304_100b 471 chr2L 11292356 11292405 chr2L 11292462 11292512 27 104 16.5 11.0 13.8 1.8 156 chr2L 11292356 intergenic not near genes chr2L 11292434 intergenic not near genes chr2L 11292512 intergenic not near genes chr2L_27_11290001 chr2L_11290001 RAL-304_100b 472 chr2L 11315245 11315272 chr2L 11317674 11317701 G2 23 2422 19.0 13.0 16.0 1.4 2456 chr2L 11315245 intergenic not near genes chr2L 11316473 intergenic not near genes chr2L 11317701 intergenic not near genes chr2L_23_11315001 chr2L_11315001 RAL-304_100b 473 chr2L 11339713 11339723 chr2L 11339815 11339825 9 101 37.0 20.5 28.8 0.3 112 chr2L 11339713 intergenic not near genes chr2L 11339769 intergenic not near genes chr2L 11339825 intergenic not near genes chr2L_9_11335001 chr2L_11335001 RAL-304_100b 474 chr2L 11339725 11339941 chr2L 11339812 11340021 43 91 15.0 19.5 17.2 2.4 296 chr2L 11339725 intergenic not near genes chr2L 11339873 intergenic not near genes chr2L 11340021 intergenic not near genes chr2L_43_11335001 chr2L_11335001 RAL-304_100b 475 chr2L 11363101 11363105 chr2L 11363214 11363215 4 112 40.0 49.5 44.8 0.1 114 chr2L 11363101 intron salr + chr2L 11363158 intron salr + chr2L 11363215 intron salr + chr2L_4_11360001 chr2L_11360001 RAL-304_100b 476 chr2L 11363106 11363115 chr2L 11363213 11363228 6 111 31.5 48.0 39.8 0.1 122 chr2L 11363106 intron salr + chr2L 11363167 intron salr + chr2L 11363228 intron salr + chr2L_6_11360001 chr2L_11360001 RAL-304_100b 477 chr2L 11379922 11379981 chr2L 11380029 11380083 20 104 13.5 0.0 6.8 2.6 161 chr2L 11379922 intergenic not near genes chr2L 11380002 intergenic not near genes chr2L 11380083 intergenic not near genes chr2L_20_11380001 chr2L_11380001 RAL-304_100b 478 chr2L 11380586 11380644 chr2L 11380687 11380740 43 98 10.0 12.5 11.2 3.5 154 chr2L 11380586 intergenic not near genes chr2L 11380663 intergenic not near genes chr2L 11380740 intergenic not near genes chr2L_43_11380001 chr2L_11380001 RAL-304_100b 479 chr2L 11399518 11399535 chr2L 11399605 11399637 6 96 16.0 0.5 8.2 0.7 119 chr2L 11399518 intergenic not near genes chr2L 11399578 intergenic not near genes chr2L 11399637 intergenic not near genes chr2L_6_11395001 chr2L_11395001 RAL-304_100b 480 chr2L 11455537 11455555 chr2L 11455647 11455654 14 109 46.5 15.5 31.0 0.4 117 chr2L 11455537 intergenic not near genes chr2L 11455596 intergenic not near genes chr2L 11455654 intergenic not near genes chr2L_14_11455001 chr2L_11455001 RAL-304_100b 481 chr2L 11455556 11455596 chr2L 11455646 11455686 51 106 17.5 15.0 16.2 3.0 130 chr2L 11455556 intergenic not near genes chr2L 11455621 intergenic not near genes chr2L 11455686 intergenic not near genes chr2L_51_11455001 chr2L_11455001 RAL-304_100b 482 chr2L 11492988 11492995 chr2L 11493153 11493160 11 163 0.0 8.0 4.0 2.2 172 chr2L 11492988 intergenic not near genes chr2L 11493074 intergenic not near genes chr2L 11493160 intergenic not near genes chr2L_11_11490001 chr2L_11490001 RAL-304_100b 483 chr2L 11496609 11496650 chr2L 11496712 11496753 36 100 14.5 7.5 11.0 3.0 144 chr2L 11496609 intergenic CG6488 - chr2L 11496681 intergenic CG6488 - chr2L 11496753 intergenic CG6488 - chr2L_36_11495001 chr2L_11495001 RAL-304_100b 484 chr2L 11537109 11537142 chr2L 11537388 11537431 30 279 14.5 18.5 16.5 1.7 322 chr2L 11537109 intergenic CG43438 + chr2L 11537270 intergenic CG43438 + chr2L 11537431 intergenic not near genes chr2L_30_11535001 chr2L_11535001 RAL-304_100b 485 chr2L 11540560 11540611 chr2L 11547987 11548038 Tabor 14 7423 6.5 11.0 8.8 1.4 7478 chr2L 11540560 intergenic not near genes chr2L 11544299 intergenic not near genes chr2L 11548038 intergenic not near genes chr2L_14_11540001 chr2L_11540001 RAL-304_100b 486 chr2L 11563614 11563668 chr2L 11568843 11568897 copia 37 5225 15.0 10.5 12.8 2.7 5283 chr2L 11563614 intergenic not near genes chr2L 11566256 intergenic not near genes chr2L 11568897 intergenic not near genes chr2L_37_11565001 chr2L_11565001 RAL-304_100b 487 chr2L 11584648 11584659 chr2L 11584752 11584762 8 102 52.0 13.0 32.5 0.2 114 chr2L 11584648 intron kek2 + chr2L 11584705 intron kek2 + chr2L 11584762 intron kek2 + chr2L_8_11580001 chr2L_11580001 RAL-304_100b 488 chr2L 11585234 11585239 chr2L 11585320 11585340 7 94 7.5 35.5 21.5 0.3 106 chr2L 11585234 intron kek2 + chr2L 11585287 intron kek2 + chr2L 11585340 intron kek2 + chr2L_7_11585001 chr2L_11585001 RAL-304_100b 489 chr2L 11596830 11596842 chr2L 11596935 11596947 10 105 13.5 12.0 12.8 0.7 117 chr2L 11596830 intron kek2 + chr2L 11596888 intron kek2 + chr2L 11596947 intron kek2 + chr2L_10_11595001 chr2L_11595001 RAL-304_100b 490 chr2L 11596844 11596848 chr2L 11596934 11596953 5 101 10.5 11.5 11.0 0.4 109 chr2L 11596844 intron kek2 + chr2L 11596898 intron kek2 + chr2L 11596953 intron kek2 + chr2L_5_11595001 chr2L_11595001 RAL-304_100b 491 chr2L 11610517 11610576 chr2L 11610621 11610679 31 100 11.0 8.5 9.8 2.9 162 chr2L 11610517 intron,3` UTR kek2 +,spag4 - chr2L 11610598 intron,3` UTR kek2 +,spag4 - chr2L 11610679 intron,exon kek2 +,spag4 - chr2L_31_11610001 chr2L_11610001 RAL-304_100b 492 chr2L 11614031 11614052 chr2L 11615549 11615572 hopper2 21 1516 31.5 19.0 25.2 0.8 1541 chr2L 11614031 intron kek2 + chr2L 11614802 intron kek2 + chr2L 11615572 intron kek2 + chr2L_21_11610001 chr2L_11610001 RAL-304_100b 493 chr2L 11614054 11614082 chr2L 11615545 11615562 hopper2 40 1503 20.5 17.5 19.0 2.0 1508 chr2L 11614054 intron kek2 + chr2L 11614808 intron kek2 + chr2L 11615562 intron kek2 + chr2L_40_11610001 chr2L_11610001 RAL-304_100b 494 chr2L 11657946 11658005 chr2L 11658056 11658103 50 104 6.0 18.5 12.2 3.8 157 chr2L 11657946 3` UTR CG43167 + chr2L 11658024 intergenic CG43167 + chr2L 11658103 intergenic CG43167 + chr2L_50_11655001 chr2L_11655001 RAL-304_100b 495 chr2L 11672115 11672167 chr2L 11672247 11672299 27 130 6.0 14.0 10.0 2.5 184 chr2L 11672115 intergenic not near genes chr2L 11672207 intergenic not near genes chr2L 11672299 intergenic not near genes chr2L_27_11670001 chr2L_11670001 RAL-304_100b 496 chr2L 11681761 11681774 chr2L 11681873 11681886 7 110 32.0 0.0 16.0 0.4 125 chr2L 11681761 intergenic not near genes chr2L 11681824 intergenic not near genes chr2L 11681886 intergenic not near genes chr2L_7_11680001 chr2L_11680001 RAL-304_100b 497 chr2L 11713481 11713539 chr2L 11720974 11721022 blood 43 7487 14.0 15.0 14.5 2.8 7541 chr2L 11713481 intergenic not near genes chr2L 11717252 intergenic not near genes chr2L 11721022 intergenic CR44143 + chr2L_43_11715001 chr2L_11715001 RAL-304_100b 498 chr2L 11723079 11723094 chr2L 11723179 11723200 8 102 17.5 19.0 18.2 0.4 121 chr2L 11723079 intergenic not near genes chr2L 11723140 intergenic not near genes chr2L 11723200 intergenic not near genes chr2L_8_11720001 chr2L_11720001 RAL-304_100b 499 chr2L 11723095 11723128 chr2L 11723175 11723234 36 99 12.5 16.0 14.2 2.4 139 chr2L 11723095 intergenic not near genes chr2L 11723164 intergenic not near genes chr2L 11723234 intergenic not near genes chr2L_36_11720001 chr2L_11720001 RAL-304_100b 500 chr2L 7547262 7547264 chr2L 11748559 11748561 4 4201297 12.5 43.5 28.0 0.1 4201299 chr2L 7547262 intron RapGAP1 - chr2L 9647912 exon Apoltp + chr2L 11748561 intergenic not near genes chr2L_4_9645001 chr2L_9645001 RAL-304_100b 501 chr2L 11770572 11770631 chr2L 11770684 11770732 41 107 10.0 16.5 13.2 2.9 160 chr2L 11770572 intergenic not near genes chr2L 11770652 intergenic not near genes chr2L 11770732 intergenic not near genes chr2L_41_11770001 chr2L_11770001 RAL-304_100b 502 chr2L 11781009 11781193 chr2L 11781118 11781294 12 104 0.0 0.0 0.0 12.0 285 chr2L 11781009 intergenic not near genes chr2L 11781152 intergenic not near genes chr2L 11781294 intergenic not near genes chr2L_12_11780001 chr2L_11780001 RAL-304_100b 503 chr2L 11820401 11820461 chr2L 11820511 11820567 46 104 2.5 12.0 7.2 5.6 166 chr2L 11820401 intron Pde1c - chr2L 11820484 intron Pde1c - chr2L 11820567 intron Pde1c - chr2L_46_11820001 chr2L_11820001 RAL-304_100b 504 chr2L 11825682 11825692 chr2L 11825786 11825796 12 104 31.5 0.0 15.8 0.7 114 chr2L 11825682 intron Pde1c - chr2L 11825739 intron Pde1c - chr2L 11825796 intron Pde1c - chr2L_12_11825001 chr2L_11825001 RAL-304_100b 505 chr2L 11951944 11951992 chr2L 11952057 11952105 23 112 9.0 2.0 5.5 3.5 161 chr2L 11951944 intergenic CR43314 - chr2L 11952024 intergenic CR43314 - chr2L 11952105 intergenic CR43314 - chr2L_23_11950001 chr2L_11950001 RAL-304_100b 506 chr2L 11969218 11969240 chr2L 21941171 21941171 7 9971939 43.0 18.5 30.8 0.2 9971953 chr2L 11969218 intron CR43314 - chr2L 16955194 intergenic not near genes chr2L 21941171 intergenic not near genes chr2L_7_16955001 chr2L_16955001 RAL-304_100b 507 chr2L 12031375 12031386 chr2L 12031481 12031492 4 106 16.5 9.5 13.0 0.3 117 chr2L 12031375 intron dmGlut + chr2L 12031434 intron dmGlut + chr2L 12031492 intron dmGlut + chr2L_4_12030001 chr2L_12030001 RAL-304_100b 508 chr2L 12031390 12031418 chr2L 12031466 12031524 13 104 7.5 9.0 8.2 1.4 134 chr2L 12031390 intron dmGlut + chr2L 12031457 intron dmGlut + chr2L 12031524 intron dmGlut + chr2L_13_12030001 chr2L_12030001 RAL-304_100b 509 chr2L 12049707 12049763 chr2L 12049847 12049877 57 134 19.0 14.0 16.5 3.3 170 chr2L 12049707 5` UTR CG14945 + chr2L 12049792 5` UTR CG14945 + chr2L 12049877 5` UTR CG14945 + chr2L_57_12045001 chr2L_12045001 RAL-304_100b 510 chr2L 12067306 12067329 chr2L 12074383 12074406 297 18 7076 22.0 11.5 16.8 1.0 7100 chr2L 12067306 intergenic not near genes chr2L 12070856 intergenic not near genes chr2L 12074406 intergenic not near genes chr2L_18_12070001 chr2L_12070001 RAL-304_100b 511 chr2L 12067330 12067358 chr2L 12074382 12074433 297 14 7071 12.5 11.0 11.8 1.1 7103 chr2L 12067330 intergenic not near genes chr2L 12070882 intergenic not near genes chr2L 12074433 intergenic not near genes chr2L_14_12070001 chr2L_12070001 RAL-304_100b 512 chr2L 12131443 12131497 chr2L 12131564 12131613 40 119 13.5 12.5 13.0 2.9 170 chr2L 12131443 intron rho-6 - chr2L 12131528 intron rho-6 - chr2L 12131613 intron rho-6 - chr2L_40_12130001 chr2L_12130001 RAL-304_100b 513 chr2L 12132701 12132749 chr2L 12132812 12132860 17 110 1.5 8.0 4.8 2.9 159 chr2L 12132701 intron rho-6 - chr2L 12132780 intron rho-6 - chr2L 12132860 intron rho-6 - chr2L_17_12130001 chr2L_12130001 RAL-304_100b 514 chr2L 12157586 12157638 chr2L 12157686 12157743 40 97 12.5 7.0 9.8 3.7 157 chr2L 12157586 intron CG31760 + chr2L 12157664 intron CG31760 + chr2L 12157743 intron CG31760 + chr2L_40_12155001 chr2L_12155001 RAL-304_100b 515 chr2L 12210022 12210042 chr2L 12210136 12210156 17 112 14.5 16.0 15.2 1.0 134 chr2L 12210022 intron aret + chr2L 12210089 intron aret + chr2L 12210156 intron aret + chr2L_17_12210001 chr2L_12210001 RAL-304_100b 516 chr2L 12224897 12224900 chr2L 12224976 12225001 5 96 1.5 24.5 13.0 0.4 104 chr2L 12224897 intron aret + chr2L 12224949 intron aret + chr2L 12225001 intron aret + chr2L_5_12220001 chr2L_12220001 RAL-304_100b 517 chr2L 12244889 12244914 chr2L 12244987 12244998 6 101 25.5 0.0 12.8 0.4 109 chr2L 12244889 intron aret + chr2L 12244944 intron aret + chr2L 12244998 intron aret + chr2L_6_12240001 chr2L_12240001 RAL-304_100b 518 chr2L 12254009 12254042 chr2L 12254126 12254137 13 114 12.5 0.0 6.2 1.8 128 chr2L 12254009 intron aret + chr2L 12254073 intron aret + chr2L 12254137 intron aret + chr2L_13_12250001 chr2L_12250001 RAL-304_100b 519 chr2L 12263915 12263975 chr2L 12264022 12264082 47 104 10.5 10.0 10.2 4.2 167 chr2L 12263915 intron aret + chr2L 12263998 intron aret + chr2L 12264082 intron aret + chr2L_47_12260001 chr2L_12260001 RAL-304_100b 520 chr2L 12269386 12269399 chr2L 12269489 12269502 7 102 10.0 11.0 10.5 0.6 116 chr2L 12269386 intron aret + chr2L 12269444 intron aret + chr2L 12269502 intron aret + chr2L_7_12265001 chr2L_12265001 RAL-304_100b 521 chr2L 12272410 12272463 chr2L 12272522 12272575 27 110 9.0 11.0 10.0 2.5 165 chr2L 12272410 intron aret + chr2L 12272492 intron aret + chr2L 12272575 intron aret + chr2L_27_12270001 chr2L_12270001 RAL-304_100b 522 chr2L 12285830 12285830 chr2L 14421049 14421049 6 2135219 50.0 83.0 66.5 0.1 2135219 chr2L 12285830 intron aret + chr2L 13353440 intron CG9395 - chr2L 14421049 intergenic not near genes chr2L_6_13350001 chr2L_13350001 RAL-304_100b 523 chr2L 12300326 12300383 chr2L 12300443 12300500 15 111 8.5 1.5 5.0 2.5 174 chr2L 12300326 intron aret + chr2L 12300413 intron aret + chr2L 12300500 intron aret + chr2L_15_12300001 chr2L_12300001 RAL-304_100b 524 chr2L 12422433 12422490 chr2L 12422542 12422596 34 107 9.5 7.0 8.2 3.7 163 chr2L 12422433 intron vir-1 - chr2L 12422514 intron vir-1 - chr2L 12422596 intron vir-1 - chr2L_34_12420001 chr2L_12420001 RAL-304_100b 525 chr2L 12471110 12471141 chr2L 12471211 12471242 6 96 9.5 15.5 12.5 0.4 132 chr2L 12471110 intron bun - chr2L 12471176 intron bun - chr2L 12471242 intron bun - chr2L_6_12470001 chr2L_12470001 RAL-304_100b 526 chr2L 12481354 12481405 chr2L 12481461 12481512 15 101 0.0 7.0 3.5 3.3 158 chr2L 12481354 intron bun - chr2L 12481433 intron bun - chr2L 12481512 intron bun - chr2L_15_12480001 chr2L_12480001 RAL-304_100b 527 chr2L 12496028 12496066 chr2L 12496413 12496442 17 379 13.0 10.5 11.8 1.3 414 chr2L 12496028 intron bun - chr2L 12496235 intron bun - chr2L 12496442 intron bun - chr2L_17_12495001 chr2L_12495001 RAL-304_100b 528 chr2L 12507259 12507296 chr2L 12507373 12507411 10 113 9.5 1.5 5.5 1.5 152 chr2L 12507259 intron bun - chr2L 12507335 intron bun - chr2L 12507411 intron bun - chr2L_10_12505001 chr2L_12505001 RAL-304_100b 529 chr2L 12529208 12529261 chr2L 12529385 12529394 45 174 8.0 9.5 8.8 4.6 186 chr2L 12529208 intron bun - chr2L 12529301 intron bun - chr2L 12529394 intron bun - chr2L_45_12525001 chr2L_12525001 RAL-304_100b 530 chr2L 12547441 12547490 chr2L 12547550 12547575 13 103 0.0 0.0 0.0 13.0 134 chr2L 12547441 intergenic not near genes chr2L 12547508 intergenic not near genes chr2L 12547575 intergenic not near genes chr2L_13_12545001 chr2L_12545001 RAL-304_100b 531 chr2L 12558293 12558353 chr2L 12565447 12565507 HMS-Beagle 40 7151 8.0 7.5 7.8 4.5 7214 chr2L 12558293 intergenic not near genes chr2L 12561900 intergenic not near genes chr2L 12565507 intergenic not near genes chr2L_40_12560001 chr2L_12560001 RAL-304_100b 532 chr2L 12619878 12619905 chr2L 12619978 12620005 19 98 18.0 10.5 14.2 1.2 127 chr2L 12619878 intron,intron nub +,Ref2 - chr2L 12619942 intron,intron nub +,Ref2 - chr2L 12620005 intron,intron nub +,Ref2 - chr2L_19_12615001 chr2L_12615001 RAL-304_100b 533 chr2L 12653765 12653801 chr2L 12653907 12653943 29 140 11.0 21.0 16.0 1.7 178 chr2L 12653765 intergenic not near genes chr2L 12653854 intergenic not near genes chr2L 12653943 intergenic not near genes chr2L_29_12650001 chr2L_12650001 RAL-304_100b 534 chr2L 12653804 12653812 chr2L 12653904 12653954 13 134 8.5 20.0 14.2 0.9 150 chr2L 12653804 intergenic not near genes chr2L 12653879 intergenic not near genes chr2L 12653954 intergenic not near genes chr2L_13_12650001 chr2L_12650001 RAL-304_100b 535 chr2L 12682848 12682902 chr2L 12682952 12682955 49 102 13.0 11.5 12.2 3.7 107 chr2L 12682848 intron pdm2 + chr2L 12682902 intron pdm2 + chr2L 12682955 intron pdm2 + chr2L_49_12680001 chr2L_12680001 RAL-304_100b 536 chr2L 12728897 12728949 chr2L 12729162 12729214 pogo 43 261 20.0 24.0 22.0 1.9 317 chr2L 12728897 intron MRP + chr2L 12729056 intron MRP + chr2L 12729214 exon MRP + chr2L_43_12725001 chr2L_12725001 RAL-304_100b 537 chr2L 12731036 12731093 chr2L 12735828 12735860 F-element 54 4788 13.0 19.0 16.0 3.2 4824 chr2L 12731036 intron MRP + chr2L 12733448 intron MRP + chr2L 12735860 intron MRP + chr2L_54_12730001 chr2L_12730001 RAL-304_100b 538 chr2L 12739152 12739199 chr2L 12743958 12744005 Doc 51 4804 31.0 28.5 29.8 1.7 4853 chr2L 12739152 exon MRP + chr2L 12741578 intron MRP + chr2L 12744005 exon MRP + chr2L_51_12740001 chr2L_12740001 RAL-304_100b 539 chr2L 12751284 12751289 chr2L 12751392 12751397 4 108 28.0 17.0 22.5 0.2 113 chr2L 12751284 intergenic not near genes chr2L 12751340 intergenic not near genes chr2L 12751397 intergenic not near genes chr2L_4_12750001 chr2L_12750001 RAL-304_100b 540 chr2L 12751291 12751340 chr2L 12751391 12751448 58 104 8.0 17.0 12.5 4.3 157 chr2L 12751291 intergenic not near genes chr2L 12751370 intergenic not near genes chr2L 12751448 intergenic not near genes chr2L_58_12750001 chr2L_12750001 RAL-304_100b 541 chr2L 12760220 12760255 chr2L 12760341 12760376 16 120 9.5 8.5 9.0 1.6 156 chr2L 12760220 intergenic CG15483 - chr2L 12760298 intergenic CG15483 - chr2L 12760376 3` UTR CG15483 - chr2L_16_12760001 chr2L_12760001 RAL-304_100b 542 chr2L 12763807 12763872 chr2L 12764041 12764074 BS 7 223 0.0 0.0 0.0 7.0 267 chr2L 12763807 intergenic not near genes chr2L 12763940 intergenic not near genes chr2L 12764074 intergenic not near genes chr2L_7_12760001 chr2L_12760001 RAL-304_100b 543 chr2L 12766734 12766777 chr2L 12766837 12766880 27 101 12.0 9.5 10.8 2.3 146 chr2L 12766734 intergenic not near genes chr2L 12766807 intergenic not near genes chr2L 12766880 intergenic not near genes chr2L_27_12765001 chr2L_12765001 RAL-304_100b 544 chr2L 12781777 12781815 chr2L 12789245 12789281 Quasimodo 28 7465 25.5 14.5 20.0 1.3 7504 chr2L 12781777 intergenic not near genes chr2L 12785529 intergenic not near genes chr2L 12789281 intergenic not near genes chr2L_28_12785001 chr2L_12785001 RAL-304_100b 545 chr2L 12791595 12791632 chr2L 12795280 12795287 F-element 32 3689 10.5 8.5 9.5 3.0 3692 chr2L 12791595 intergenic not near genes chr2L 12793441 intergenic not near genes chr2L 12795287 intergenic not near genes chr2L_32_12790001 chr2L_12790001 RAL-304_100b 546 chr2L 12807415 12807462 chr2L 12807520 12807568 24 104 13.0 11.0 12.0 1.8 153 chr2L 12807415 intergenic CR43818 - chr2L 12807492 intergenic CR43818 - chr2L 12807568 intergenic CR43818 - chr2L_24_12805001 chr2L_12805001 RAL-304_100b 547 chr2L 12835528 12835586 chr2L 12835662 12835720 31 132 5.5 4.0 4.8 5.3 192 chr2L 12835528 intergenic not near genes chr2L 12835624 intergenic not near genes chr2L 12835720 intergenic not near genes chr2L_31_12835001 chr2L_12835001 RAL-304_100b 548 chr2L 12848400 12848465 chr2L 12848517 12848578 47 115 4.5 13.0 8.8 4.8 178 chr2L 12848400 intergenic not near genes chr2L 12848489 intergenic not near genes chr2L 12848578 intergenic not near genes chr2L_47_12845001 chr2L_12845001 RAL-304_100b 549 chr2L 12861679 12861730 chr2L 12863162 12863201 hobo 69 1482 15.5 22.0 18.8 3.5 1522 chr2L 12861679 intergenic not near genes chr2L 12862440 intergenic not near genes chr2L 12863201 intergenic not near genes chr2L_69_12860001 chr2L_12860001 RAL-304_100b 550 chr2L 12893998 12894039 chr2L 12895488 12895531 hobo 33 1487 23.0 31.0 27.0 1.2 1533 chr2L 12893998 intergenic not near genes chr2L 12894764 intergenic not near genes chr2L 12895531 intergenic not near genes chr2L_33_12890001 chr2L_12890001 RAL-304_100b 551 chr2L 12894040 12894051 chr2L 12895485 12895523 hobo 15 1479 18.5 29.5 24.0 0.6 1483 chr2L 12894040 intergenic not near genes chr2L 12894782 intergenic not near genes chr2L 12895523 intergenic not near genes chr2L_15_12890001 chr2L_12890001 RAL-304_100b 552 chr2L 12930471 12930494 chr2L 12930572 12930595 14 100 11.5 12.5 12.0 1.1 124 chr2L 12930471 intergenic not near genes chr2L 12930533 intergenic not near genes chr2L 12930595 intergenic not near genes chr2L_14_12930001 chr2L_12930001 RAL-304_100b 553 chr2L 12933826 12933882 chr2L 12941315 12941353 blood 58 7488 17.0 17.5 17.2 3.2 7527 chr2L 12933826 intergenic not near genes chr2L 12937590 intergenic not near genes chr2L 12941353 intergenic not near genes chr2L_58_12935001 chr2L_12935001 RAL-304_100b 554 chr2L 13032478 13032522 chr2L 13032599 13032643 41 119 16.5 21.0 18.8 2.1 165 chr2L 13032478 intron CG9932 - chr2L 13032560 intron CG9932 - chr2L 13032643 intron CG9932 - chr2L_41_13030001 chr2L_13030001 RAL-304_100b 555 chr2L 13043646 13043691 chr2L 13043748 13043793 17 99 8.0 1.5 4.8 2.9 147 chr2L 13043646 intron CG9932 - chr2L 13043720 intron CG9932 - chr2L 13043793 intron CG9932 - chr2L_17_13040001 chr2L_13040001 RAL-304_100b 556 chr2L 13049371 13049417 chr2L 13049471 13049498 41 107 12.5 12.5 12.5 3.0 127 chr2L 13049371 intron CG9932 - chr2L 13049434 intron CG9932 - chr2L 13049498 intron CG9932 - chr2L_41_13045001 chr2L_13045001 RAL-304_100b 557 chr2L 13093853 13093864 chr2L 13093956 13093967 10 102 12.0 15.0 13.5 0.7 114 chr2L 13093853 intergenic not near genes chr2L 13093910 intergenic not near genes chr2L 13093967 intergenic not near genes chr2L_10_13090001 chr2L_13090001 RAL-304_100b 558 chr2L 13109424 13109478 chr2L 13109577 13109631 34 152 10.5 13.0 11.8 2.7 207 chr2L 13109424 3` UTR CG5142 + chr2L 13109528 intergenic CG5142 + chr2L 13109631 intergenic CG5142 + chr2L_34_13105001 chr2L_13105001 RAL-304_100b 559 chr2L 13215364 13215413 chr2L 13215664 13215713 40 297 11.0 16.5 13.8 2.7 349 chr2L 13215364 intergenic kek4 -,snRNA:U2:34ABb +,snRNA:U2:34ABc + chr2L 13215538 intergenic kek4 -,snRNA:U2:34ABb +,snRNA:U2:34ABc + chr2L 13215713 intergenic snRNA:U2:34ABb +,snRNA:U2:34ABc +,kek4 - chr2L_40_13215001 chr2L_13215001 RAL-304_100b 560 chr2L 13241933 13241983 chr2L 13244342 13244347 BS 20 2405 24.0 22.0 23.0 0.8 2414 chr2L 13241933 5` UTR CR45330 + chr2L 13243140 intron CR45330 + chr2L 13244347 5` UTR CR45330 + chr2L_20_13240001 chr2L_13240001 RAL-304_100b 561 chr2L 13294915 13294952 chr2L 13295016 13295016 5 93 4.5 0.0 2.2 1.6 101 chr2L 13294915 intron CG31729 + chr2L 13294966 intron CG31729 + chr2L 13295016 intron CG31729 + chr2L_5_13290001 chr2L_13290001 RAL-304_100b 562 chr2L 13341757 13341800 chr2L 13342394 13342438 29 636 11.0 12.0 11.5 2.3 681 chr2L 13341757 intergenic not near genes chr2L 13342098 intergenic not near genes chr2L 13342438 intergenic not near genes chr2L_29_13340001 chr2L_13340001 RAL-304_100b 563 chr2L 13369291 13369339 chr2L 13369386 13369441 59 97 9.5 14.0 11.8 4.6 150 chr2L 13369291 5` UTR CG31855 + chr2L 13369366 5` UTR CG31855 + chr2L 13369441 exon CG31855 + chr2L_59_13365001 chr2L_13365001 RAL-304_100b 564 chr2L 13398694 13398751 chr2L 13398799 13398856 29 103 8.0 12.0 10.0 2.6 162 chr2L 13398694 intergenic CG10859 -,CR44600 -,CG7110 + chr2L 13398775 intergenic CR44600 -,CG10859 -,CG7110 + chr2L 13398856 intergenic CR44600 -,CG7110 +,CG10859 - chr2L_29_13395001 chr2L_13395001 RAL-304_100b 565 chr2L 13405622 13405677 chr2L 13410444 13410468 Doc 59 4818 20.5 15.5 18.0 3.1 4846 chr2L 13405622 exon CG7110 + chr2L 13408045 intron CG7110 + chr2L 13410468 intron CG7110 + chr2L_59_13405001 chr2L_13405001 RAL-304_100b 566 chr2L 13449447 13449494 chr2L 13456908 13456955 Quasimodo 25 7460 13.0 17.5 15.2 1.5 7508 chr2L 13449447 intron,5` UTR CG42784 +,Hsp60D - chr2L 13453201 intron CG42784 + chr2L 13456955 intron CG42784 + chr2L_25_13450001 chr2L_13450001 RAL-304_100b 567 chr2L 13481437 13481473 chr2L 13482064 13482105 jockey 29 628 19.0 26.0 22.5 1.2 668 chr2L 13481437 intron CG42784 + chr2L 13481771 intron CG42784 + chr2L 13482105 intron CG42784 + chr2L_29_13480001 chr2L_13480001 RAL-304_100b 568 chr2L 13522108 13522165 chr2L 13527651 13527690 Transpac 33 5539 4.5 13.5 9.0 3.3 5582 chr2L 13522108 intron B4 - chr2L 13524899 intron B4 - chr2L 13527690 intron B4 - chr2L_33_13520001 chr2L_13520001 RAL-304_100b 569 chr2L 13535975 13535980 chr2L 13536185 13536190 6 210 43.5 16.0 29.8 0.2 215 chr2L 13535975 intron B4 - chr2L 13536082 intron B4 - chr2L 13536190 intron B4 - chr2L_6_13535001 chr2L_13535001 RAL-304_100b 570 chr2L 13535981 13536029 chr2L 13536184 13536238 47 207 18.0 15.5 16.8 2.6 257 chr2L 13535981 intron B4 - chr2L 13536110 intron B4 - chr2L 13536238 intron B4 - chr2L_47_13535001 chr2L_13535001 RAL-304_100b 571 chr2L 13543941 13543969 chr2L 13544042 13544072 26 99 34.0 18.5 26.2 1.0 131 chr2L 13543941 intron B4 - chr2L 13544006 intron B4 - chr2L 13544072 intron B4 - chr2L_26_13540001 chr2L_13540001 RAL-304_100b 572 chr2L 13560385 13560421 chr2L 13565230 13565266 F-element 22 4844 12.0 8.0 10.0 2.0 4881 chr2L 13560385 intron kuz + chr2L 13562826 intron kuz + chr2L 13565266 intron kuz + chr2L_22_13560001 chr2L_13560001 RAL-304_100b 573 chr2L 13577731 13577783 chr2L 13577837 13577879 36 101 11.0 9.5 10.2 3.2 148 chr2L 13577731 intron kuz + chr2L 13577805 intron kuz + chr2L 13577879 intron kuz + chr2L_36_13575001 chr2L_13575001 RAL-304_100b 574 chr2L 13622115 13622171 chr2L 13622234 13622259 29 112 12.0 4.0 8.0 3.2 144 chr2L 13622115 intron kuz + chr2L 13622187 intron kuz + chr2L 13622259 intron kuz + chr2L_29_13620001 chr2L_13620001 RAL-304_100b 575 chr2L 13699529 13699586 chr2L 13699629 13699688 65 98 13.0 18.0 15.5 3.9 159 chr2L 13699529 intron CG31814 - chr2L 13699608 intron CG31814 - chr2L 13699688 intron CG31814 - chr2L_65_13695001 chr2L_13695001 RAL-304_100b 576 chr2L 1257099 1257099 chr2L 13707672 13707717 4 12450602 40.5 64.0 52.2 0.1 12450618 chr2L 1257099 intron robo3 + chr2L 7482408 exon Ziz - chr2L 13707717 intron CG31814 - chr2L_4_7480001 chr2L_7480001 RAL-304_100b 577 chr2L 13713538 13713551 chr2L 13713639 13713652 7 101 7.5 11.0 9.2 0.7 114 chr2L 13713538 intron CG31814 - chr2L 13713595 intron CG31814 - chr2L 13713652 intron CG31814 - chr2L_7_13710001 chr2L_13710001 RAL-304_100b 578 chr2L 13713554 13713572 chr2L 13713638 13713673 12 99 5.5 10.0 7.8 1.4 119 chr2L 13713554 intron CG31814 - chr2L 13713614 intron CG31814 - chr2L 13713673 intron CG31814 - chr2L_12_13710001 chr2L_13710001 RAL-304_100b 579 chr2L 13733753 13733761 chr2L 13733897 13733905 8 143 16.5 17.5 17.0 0.4 152 chr2L 13733753 intergenic not near genes chr2L 13733829 intergenic not near genes chr2L 13733905 intergenic not near genes chr2L_8_13730001 chr2L_13730001 RAL-304_100b 580 chr2L 13733764 13733788 chr2L 13733893 13733932 19 142 7.5 15.5 11.5 1.5 168 chr2L 13733764 intergenic not near genes chr2L 13733848 intergenic not near genes chr2L 13733932 intergenic not near genes chr2L_19_13730001 chr2L_13730001 RAL-304_100b 581 chr2L 13740857 13740915 chr2L 13740980 13740991 63 117 16.0 20.5 18.2 3.3 134 chr2L 13740857 intergenic not near genes chr2L 13740924 intergenic not near genes chr2L 13740991 intergenic not near genes chr2L_63_13740001 chr2L_13740001 RAL-304_100b 582 chr2L 13749187 13749211 chr2L 13749295 13749319 17 108 0.0 5.0 2.5 4.9 132 chr2L 13749187 intron,intron CR44846 +,TM9SF4 + chr2L 13749253 intron,intron CR44846 +,TM9SF4 + chr2L 13749319 intron,intron CR44846 +,TM9SF4 + chr2L_17_13745001 chr2L_13745001 RAL-304_100b 583 chr2L 13753254 13753268 chr2L 13753370 13753381 11 115 24.5 0.0 12.2 0.8 127 chr2L 13753254 intron,intron CR44846 +,TM9SF4 + chr2L 13753318 intron,intron CR44846 +,TM9SF4 + chr2L 13753381 intron,intron CR44846 +,TM9SF4 + chr2L_11_13750001 chr2L_13750001 RAL-304_100b 584 chr2L 13753272 13753307 chr2L 13753366 13753428 13 117 9.0 0.0 4.5 2.4 156 chr2L 13753272 intron,intron CR44846 +,TM9SF4 + chr2L 13753350 intron,intron CR44846 +,TM9SF4 + chr2L 13753428 intron,intron CR44846 +,TM9SF4 + chr2L_13_13750001 chr2L_13750001 RAL-304_100b 585 chr2L 13754012 13754220 chr2L 13754147 13754325 28 102 4.0 14.0 9.0 2.8 313 chr2L 13754012 intron,intron CR44846 +,TM9SF4 + chr2L 13754168 intron,intron CR44846 +,TM9SF4 + chr2L 13754325 intron,intron CR44846 +,TM9SF4 + chr2L_28_13750001 chr2L_13750001 RAL-304_100b 586 chr2L 13761779 13761797 chr2L 13762915 13762929 Doc 16 1135 28.5 12.5 20.5 0.7 1150 chr2L 13761779 intron TM9SF4 + chr2L 13762354 intron TM9SF4 + chr2L 13762929 intron TM9SF4 + chr2L_16_13760001 chr2L_13760001 RAL-304_100b 587 chr2L 13761798 13761835 chr2L 13762911 13762956 Doc 20 1128 12.0 11.0 11.5 1.6 1158 chr2L 13761798 intron TM9SF4 + chr2L 13762377 intron TM9SF4 + chr2L 13762956 intron TM9SF4 + chr2L_20_13760001 chr2L_13760001 RAL-304_100b 588 chr2L 13800152 13800206 chr2L 13800281 13800335 31 126 9.5 11.5 10.5 2.7 183 chr2L 13800152 intergenic Sec71 + chr2L 13800244 intergenic not near genes chr2L 13800335 intergenic not near genes chr2L_31_13800001 chr2L_13800001 RAL-304_100b 589 chr2L 13842107 13842165 chr2L 13842216 13842274 33 106 7.5 3.0 5.2 5.3 167 chr2L 13842107 intron CenG1A + chr2L 13842190 intron CenG1A + chr2L 13842274 intron CenG1A + chr2L_33_13840001 chr2L_13840001 RAL-304_100b 590 chr2L 13853064 13853082 chr2L 13862239 13862257 roo 11 9175 19.5 11.5 15.5 0.7 9193 chr2L 13853064 intron CenG1A + chr2L 13857660 intron CenG1A + chr2L 13862257 intron CenG1A + chr2L_11_13855001 chr2L_13855001 RAL-304_100b 591 chr2L 13853083 13853117 chr2L 13862236 13862267 roo 28 9168 11.0 10.5 10.8 2.4 9184 chr2L 13853083 intron CenG1A + chr2L 13857675 intron CenG1A + chr2L 13862267 intron CenG1A + chr2L_28_13855001 chr2L_13855001 RAL-304_100b 592 chr2L 13952129 13952143 chr2L 13952236 13952250 9 107 21.0 6.5 13.8 0.6 121 chr2L 13952129 intron Ance-3 + chr2L 13952190 intron Ance-3 + chr2L 13952250 intron Ance-3 + chr2L_9_13950001 chr2L_13950001 RAL-304_100b 593 chr2L 13952144 13952175 chr2L 13952235 13952282 9 103 9.5 6.5 8.0 1.0 138 chr2L 13952144 intron Ance-3 + chr2L 13952213 intron Ance-3 + chr2L 13952282 intron Ance-3 + chr2L_9_13950001 chr2L_13950001 RAL-304_100b 594 chr2L 13981499 13981520 chr2L 13981615 13981636 20 115 37.0 19.5 28.2 0.7 137 chr2L 13981499 exon NimC2 + chr2L 13981568 intron NimC2 + chr2L 13981636 intron NimC2 + chr2L_20_13980001 chr2L_13980001 RAL-304_100b 595 chr2L 13981521 13981549 chr2L 13981613 13981665 42 112 19.5 18.5 19.0 2.1 144 chr2L 13981521 exon NimC2 + chr2L 13981593 intron NimC2 + chr2L 13981665 intron NimC2 + chr2L_42_13980001 chr2L_13980001 RAL-304_100b 596 chr2L 14121753 14121773 chr2L 14121860 14121875 16 106 40.0 18.5 29.2 0.5 122 chr2L 14121753 intergenic not near genes chr2L 14121814 intergenic not near genes chr2L 14121875 intergenic not near genes chr2L_16_14120001 chr2L_14120001 RAL-304_100b 597 chr2L 14121774 14121777 chr2L 14121859 14121877 4 94 33.5 17.5 25.5 0.2 103 chr2L 14121774 intergenic not near genes chr2L 14121826 intergenic not near genes chr2L 14121877 intergenic not near genes chr2L_4_14120001 chr2L_14120001 RAL-304_100b 598 chr2L 14121778 14121810 chr2L 14121858 14121917 43 97 11.0 17.5 14.2 2.8 139 chr2L 14121778 intergenic not near genes chr2L 14121848 intergenic not near genes chr2L 14121917 intergenic not near genes chr2L_43_14120001 chr2L_14120001 RAL-304_100b 599 chr2L 14151569 14151579 chr2L 14151672 14151681 4 103 34.0 10.0 22.0 0.2 112 chr2L 14151569 intron CG17341 + chr2L 14151625 intron CG17341 + chr2L 14151681 intron CG17341 + chr2L_4_14150001 chr2L_14150001 RAL-304_100b 600 chr2L 14151582 14151628 chr2L 14151670 14151729 20 100 8.0 10.0 9.0 2.0 147 chr2L 14151582 intron CG17341 + chr2L 14151656 intron CG17341 + chr2L 14151729 intron CG17341 + chr2L_20_14150001 chr2L_14150001 RAL-304_100b 601 chr2L 14152549 14152604 chr2L 14152665 14152720 13 115 8.5 3.5 6.0 1.9 171 chr2L 14152549 intron CG17341 + chr2L 14152634 intron CG17341 + chr2L 14152720 intron CG17341 + chr2L_13_14150001 chr2L_14150001 RAL-304_100b 602 chr2L 14160664 14160716 chr2L 14160775 14160827 23 109 6.0 7.5 6.8 2.9 163 chr2L 14160664 intergenic CG17341 +,CG43332 - chr2L 14160746 intergenic CG17341 +,CG43332 - chr2L 14160827 intergenic CG17341 +,CG43332 - chr2L_23_14160001 chr2L_14160001 RAL-304_100b 603 chr2L 14162127 14162140 chr2L 14162256 14162269 17 131 0.5 37.0 18.8 0.9 142 chr2L 14162127 exon CG43332 - chr2L 14162198 exon CG43332 - chr2L 14162269 exon CG43332 - chr2L_17_14160001 chr2L_14160001 RAL-304_100b 604 chr2L 14180038 14180051 chr2L 14180139 14180152 19 101 26.5 11.5 19.0 0.9 114 chr2L 14180038 intron CG43333 - chr2L 14180095 intron CG43333 - chr2L 14180152 intron CG43333 - chr2L_19_14180001 chr2L_14180001 RAL-304_100b 605 chr2L 14180052 14180094 chr2L 14180138 14180193 41 96 12.0 12.5 12.2 3.1 141 chr2L 14180052 intron CG43333 - chr2L 14180122 intron CG43333 - chr2L 14180193 intron CG43333 - chr2L_41_14180001 chr2L_14180001 RAL-304_100b 606 chr2L 14290075 14290130 chr2L 14290182 14290237 51 103 8.5 12.5 10.5 4.4 162 chr2L 14290075 intron wb + chr2L 14290156 intron wb + chr2L 14290237 intron wb + chr2L_51_14290001 chr2L_14290001 RAL-304_100b 607 chr2L 14337039 14337095 chr2L 14337152 14337193 52 108 17.5 17.5 17.5 2.8 154 chr2L 14337039 intron CG33090 + chr2L 14337116 intron CG33090 + chr2L 14337193 intron CG33090 + chr2L_52_14335001 chr2L_14335001 RAL-304_100b 608 chr2L 14452413 14452464 chr2L 14452548 14452599 28 131 15.5 0.0 7.8 3.2 186 chr2L 14452413 intergenic not near genes chr2L 14452506 intergenic not near genes chr2L 14452599 intergenic not near genes chr2L_28_14450001 chr2L_14450001 RAL-304_100b 609 chr2L 14462707 14462710 chr2L 14462819 14462822 4 112 0.5 0.0 0.2 3.3 115 chr2L 14462707 intergenic not near genes chr2L 14462764 intergenic not near genes chr2L 14462822 intergenic not near genes chr2L_4_14460001 chr2L_14460001 RAL-304_100b 610 chr2L 14462720 14462823 chr2L 14462822 14462944 6 116 0.0 0.0 0.0 6.0 224 chr2L 14462720 intergenic not near genes chr2L 14462832 intergenic not near genes chr2L 14462944 intergenic not near genes chr2L_6_14460001 chr2L_14460001 RAL-304_100b 611 chr2L 14503409 14503431 chr2L 14503513 14503529 13 103 18.0 12.0 15.0 0.8 120 chr2L 14503409 intergenic not near genes chr2L 14503469 intergenic not near genes chr2L 14503529 intergenic not near genes chr2L_13_14500001 chr2L_14500001 RAL-304_100b 612 chr2L 14518676 14518680 chr2L 14531005 14531006 4 12328 33.0 14.0 23.5 0.2 12330 chr2L 14518676 intergenic not near genes chr2L 14524841 intron CG33648 + chr2L 14531006 intergenic not near genes chr2L_4_14520001 chr2L_14520001 RAL-304_100b 613 chr2L 14525547 14525600 chr2L 14525654 14525707 19 106 6.0 9.0 7.5 2.2 160 chr2L 14525547 exon CG33648 + chr2L 14525627 3` UTR CG33648 + chr2L 14525707 intergenic CG33648 + chr2L_19_14525001 chr2L_14525001 RAL-304_100b 614 chr2L 14547094 14547107 chr2L 14547202 14547215 14 106 42.0 19.5 30.8 0.4 121 chr2L 14547094 intergenic CG4218 - chr2L 14547154 intergenic CG4218 - chr2L 14547215 intergenic CG4218 - chr2L_14_14545001 chr2L_14545001 RAL-304_100b 615 chr2L 14547108 14547110 chr2L 14547201 14547218 5 102 40.0 19.0 29.5 0.2 110 chr2L 14547108 intergenic CG4218 - chr2L 14547163 intergenic CG4218 - chr2L 14547218 intergenic CG4218 - chr2L_5_14545001 chr2L_14545001 RAL-304_100b 616 chr2L 14547111 14547129 chr2L 14547199 14547223 27 98 30.5 17.5 24.0 1.1 112 chr2L 14547111 intergenic CG4218 - chr2L 14547167 intergenic CG4218 - chr2L 14547223 intergenic CG4218 - chr2L_27_14545001 chr2L_14545001 RAL-304_100b 617 chr2L 14547130 14547152 chr2L 14547198 14547245 31 97 14.0 17.0 15.5 1.9 115 chr2L 14547130 intergenic CG4218 - chr2L 14547188 intergenic CG4218 - chr2L 14547245 intergenic CG4218 - chr2L_31_14545001 chr2L_14545001 RAL-304_100b 618 chr2L 14588358 14588418 chr2L 14588536 14588595 41 174 13.0 9.0 11.0 3.4 237 chr2L 14588358 intergenic CG42680 - chr2L 14588476 intergenic CG42680 - chr2L 14588595 intergenic CG42680 - chr2L_41_14585001 chr2L_14585001 RAL-304_100b 619 chr2L 14588651 14588668 chr2L 14588967 14588979 7 315 9.5 7.5 8.5 0.7 328 chr2L 14588651 intergenic CG42680 - chr2L 14588815 intergenic not near genes chr2L 14588979 intergenic not near genes chr2L_7_14585001 chr2L_14585001 RAL-304_100b 620 chr2L 14601950 14602003 chr2L 14602059 14602112 51 105 12.5 15.5 14.0 3.4 162 chr2L 14601950 exon osp - chr2L 14602031 intron osp - chr2L 14602112 exon osp - chr2L_51_14600001 chr2L_14600001 RAL-304_100b 621 chr2L 14614074 14614087 chr2L 14614392 14614405 10 317 41.0 21.5 31.2 0.3 331 chr2L 14614074 intron osp - chr2L 14614240 intron osp - chr2L 14614405 intron osp - chr2L_10_14610001 chr2L_14610001 RAL-304_100b 622 chr2L 14614077 14614077 chr2L 14614264 14614274 4 190 42.0 34.5 38.2 0.1 197 chr2L 14614077 intron osp - chr2L 14614176 intron osp - chr2L 14614274 intron osp - chr2L_4_14610001 chr2L_14610001 RAL-304_100b 623 chr2L 14642545 14642604 chr2L 14651733 14651792 roo 15 9186 7.0 13.0 10.0 1.4 9247 chr2L 14642545 intron osp - chr2L 14647168 intron osp - chr2L 14651792 intron osp - chr2L_15_14645001 chr2L_14645001 RAL-304_100b 624 chr2L 14681778 14681830 chr2L 14682008 14682060 39 228 10.5 8.5 9.5 3.7 282 chr2L 14681778 intron osp - chr2L 14681919 intron osp - chr2L 14682060 intron osp - chr2L_39_14680001 chr2L_14680001 RAL-304_100b 625 chr2L 14707189 14707228 chr2L 14707333 14707372 28 140 10.5 1.0 5.8 4.1 183 chr2L 14707189 intergenic not near genes chr2L 14707280 intergenic not near genes chr2L 14707372 intergenic not near genes chr2L_28_14705001 chr2L_14705001 RAL-304_100b 626 chr2L 14839724 14839777 chr2L 14839825 14839867 30 99 9.0 9.0 9.0 3.0 143 chr2L 14839724 intergenic not near genes chr2L 14839796 intergenic not near genes chr2L 14839867 intergenic not near genes chr2L_30_14835001 chr2L_14835001 RAL-304_100b 627 chr2L 14840949 14841010 chr2L 14841062 14841082 46 107 7.5 14.0 10.8 3.9 133 chr2L 14840949 3` UTR CR43805 - chr2L 14841016 3` UTR CR43805 - chr2L 14841082 3` UTR CR43805 - chr2L_46_14840001 chr2L_14840001 RAL-304_100b 628 chr2L 14889927 14889981 chr2L 14890377 14890431 jockey 51 448 12.0 12.0 12.0 3.9 504 chr2L 14889927 intergenic not near genes chr2L 14890179 intergenic not near genes chr2L 14890431 intergenic not near genes chr2L_51_14890001 chr2L_14890001 RAL-304_100b 629 chr2L 14984363 14984380 chr2L 14991990 14992003 opus 13 7625 26.5 14.5 20.5 0.6 7640 chr2L 14984363 intron mol - chr2L 14988183 intron mol - chr2L 14992003 intron mol - chr2L_13_14985001 chr2L_14985001 RAL-304_100b 630 chr2L 14984390 14984405 chr2L 14991983 14992034 opus 5 7622 16.0 11.0 13.5 0.3 7644 chr2L 14984390 intron mol - chr2L 14988212 intron mol - chr2L 14992034 intron mol - chr2L_5_14985001 chr2L_14985001 RAL-304_100b 631 chr2L 15000856 15000913 chr2L 15000957 15001014 26 109 107.0 95.5 101.2 0.3 158 chr2L 15000856 intergenic not near genes chr2L 15000935 intergenic not near genes chr2L 15001014 intergenic not near genes chr2L_26_15000001 chr2L_15000001 RAL-304_100b 632 chr2L 15021415 15021472 chr2L 15021516 15021573 42 100 17.0 13.0 15.0 2.6 158 chr2L 15021415 intron GABA-B-R1 + chr2L 15021494 intron GABA-B-R1 + chr2L 15021573 intron GABA-B-R1 + chr2L_42_15020001 chr2L_15020001 RAL-304_100b 633 chr2L 15025995 15026010 chr2L 15026101 15026116 15 105 48.0 14.0 31.0 0.5 121 chr2L 15025995 exon GABA-B-R1 + chr2L 15026056 exon GABA-B-R1 + chr2L 15026116 intron GABA-B-R1 + chr2L_15_15025001 chr2L_15025001 RAL-304_100b 634 chr2L 15026011 15026052 chr2L 15026100 15026137 55 100 17.5 14.0 15.8 3.3 126 chr2L 15026011 exon GABA-B-R1 + chr2L 15026074 intron GABA-B-R1 + chr2L 15026137 intron GABA-B-R1 + chr2L_55_15025001 chr2L_15025001 RAL-304_100b 635 chr2L 15044701 15044734 chr2L 15044802 15044820 16 100 9.5 0.0 4.8 2.8 119 chr2L 15044701 intergenic ck - chr2L 15044760 intergenic ck - chr2L 15044820 intergenic ck - chr2L_16_15040001 chr2L_15040001 RAL-304_100b 636 chr2L 15103834 15103867 chr2L 15103956 15103989 15 122 13.5 3.0 8.2 1.6 155 chr2L 15103834 intergenic not near genes chr2L 15103912 intergenic not near genes chr2L 15103989 intergenic not near genes chr2L_15_15100001 chr2L_15100001 RAL-304_100b 637 chr2L 15138960 15139004 chr2L 15139073 15139117 8 113 8.5 0.0 4.2 1.5 157 chr2L 15138960 intergenic not near genes chr2L 15139038 intergenic not near genes chr2L 15139117 intergenic not near genes chr2L_8_15135001 chr2L_15135001 RAL-304_100b 638 chr2L 15195363 15195416 chr2L 15195488 15195500 38 117 10.5 12.0 11.2 3.1 137 chr2L 15195363 intron CG4168 - chr2L 15195432 intron CG4168 - chr2L 15195500 intron CG4168 - chr2L_38_15195001 chr2L_15195001 RAL-304_100b 639 chr2L 15216097 15216113 chr2L 15216234 15216252 6 138 22.5 2.0 12.2 0.5 155 chr2L 15216097 3` UTR CG43230 + chr2L 15216174 intergenic CG43230 + chr2L 15216252 intergenic CG43230 + chr2L_6_15215001 chr2L_15215001 RAL-304_100b 640 chr2L 15313039 15313039 chr2L 15313129 15313153 5 100 5.0 9.5 7.2 0.6 114 chr2L 15313039 intergenic not near genes chr2L 15313096 intergenic not near genes chr2L 15313153 intergenic not near genes chr2L_5_15310001 chr2L_15310001 RAL-304_100b 641 chr2L 15318918 15318981 chr2L 15319035 15319083 19 110 1.5 16.5 9.0 1.9 165 chr2L 15318918 intergenic nht - chr2L 15319000 intergenic nht - chr2L 15319083 intergenic nht - chr2L_19_15315001 chr2L_15315001 RAL-304_100b 642 chr2L 15346020 15346081 chr2L 15346122 15346171 62 98 17.0 20.5 18.8 3.1 151 chr2L 15346020 intergenic not near genes chr2L 15346096 intergenic not near genes chr2L 15346171 intergenic not near genes chr2L_62_15345001 chr2L_15345001 RAL-304_100b 643 chr2L 15444401 15444431 chr2L 15444514 15444544 25 111 24.5 13.0 18.8 1.3 143 chr2L 15444401 intergenic not near genes chr2L 15444472 intergenic not near genes chr2L 15444544 intergenic not near genes chr2L_25_15440001 chr2L_15440001 RAL-304_100b 644 chr2L 15446026 15446084 chr2L 15453519 15453532 blood 36 7491 8.5 7.5 8.0 4.0 7506 chr2L 15446026 intergenic not near genes chr2L 15449779 intergenic not near genes chr2L 15453532 intergenic not near genes chr2L_36_15445001 chr2L_15445001 RAL-304_100b 645 chr2L 15482553 15482605 chr2L 15482714 15482766 15 160 9.5 2.5 6.0 2.1 213 chr2L 15482553 intergenic not near genes chr2L 15482660 intergenic not near genes chr2L 15482766 intergenic not near genes chr2L_15_15480001 chr2L_15480001 RAL-304_100b 646 chr2L 15490027 15490045 chr2L 15490161 15490185 13 139 0.5 13.5 7.0 1.6 158 chr2L 15490027 intergenic not near genes chr2L 15490106 intergenic not near genes chr2L 15490185 intergenic not near genes chr2L_13_15490001 chr2L_15490001 RAL-304_100b 647 chr2L 15499889 15499937 chr2L 15500002 15500049 13 113 1.5 11.0 6.2 1.8 160 chr2L 15499889 intron lace + chr2L 15499969 intron lace + chr2L 15500049 intron lace + chr2L_13_15495001 chr2L_15495001 RAL-304_100b 648 chr2L 15514298 15514330 chr2L 15514407 15514439 27 106 18.5 25.0 21.8 1.2 141 chr2L 15514298 intergenic not near genes chr2L 15514368 intergenic not near genes chr2L 15514439 intergenic not near genes chr2L_27_15510001 chr2L_15510001 RAL-304_100b 649 chr2L 15541051 15541058 chr2L 15541171 15541182 5 124 23.0 8.5 15.8 0.3 131 chr2L 15541051 intergenic not near genes chr2L 15541116 intergenic not near genes chr2L 15541182 intergenic not near genes chr2L_5_15540001 chr2L_15540001 RAL-304_100b 650 chr2L 15541061 15541103 chr2L 15541170 15541227 15 119 6.0 7.5 6.8 1.9 166 chr2L 15541061 intergenic not near genes chr2L 15541144 intergenic not near genes chr2L 15541227 intergenic not near genes chr2L_15_15540001 chr2L_15540001 RAL-304_100b 651 chr2L 15586385 15586437 chr2L 15593462 15593514 297 39 7074 15.5 13.5 14.5 2.5 7129 chr2L 15586385 intergenic not near genes chr2L 15589950 intergenic not near genes chr2L 15593514 intergenic not near genes chr2L_39_15585001 chr2L_15585001 RAL-304_100b 652 chr2L 15598749 15598795 chr2L 15598848 15598899 12 103 9.0 3.0 6.0 1.7 150 chr2L 15598749 intergenic not near genes chr2L 15598824 intergenic not near genes chr2L 15598899 intergenic not near genes chr2L_12_15595001 chr2L_15595001 RAL-304_100b 653 chr2L 15626350 15626371 chr2L 15626442 15626473 11 95 33.0 16.0 24.5 0.4 123 chr2L 15626350 intergenic not near genes chr2L 15626412 intergenic not near genes chr2L 15626473 intergenic not near genes chr2L_11_15625001 chr2L_15625001 RAL-304_100b 654 chr2L 15626373 15626392 chr2L 15626441 15626472 15 83 17.5 14.0 15.8 0.9 99 chr2L 15626373 intergenic not near genes chr2L 15626422 intergenic not near genes chr2L 15626472 intergenic not near genes chr2L_15_15625001 chr2L_15625001 RAL-304_100b 655 chr2L 15628392 15628411 chr2L 15628493 15628512 11 101 0.0 22.0 11.0 0.9 120 chr2L 15628392 intergenic CG7631 + chr2L 15628452 intergenic CG7631 + chr2L 15628512 intergenic CG7631 + chr2L_11_15625001 chr2L_15625001 RAL-304_100b 656 chr2L 15636652 15636696 chr2L 15636753 15636787 15 98 9.5 12.5 11.0 1.2 135 chr2L 15636652 intergenic not near genes chr2L 15636720 intergenic not near genes chr2L 15636787 intergenic not near genes chr2L_15_15635001 chr2L_15635001 RAL-304_100b 657 chr2L 15750002 15750011 chr2L 15750140 15750149 5 137 8.0 0.0 4.0 1.0 147 chr2L 15750002 intron l(2)35Di - chr2L 15750076 intron l(2)35Di - chr2L 15750149 intron l(2)35Di - chr2L_5_15750001 chr2L_15750001 RAL-304_100b 658 chr2L 15768401 15768425 chr2L 15768508 15768532 12 107 6.5 5.0 5.8 1.8 131 chr2L 15768401 intergenic wek -,Ku80 - chr2L 15768466 intergenic wek -,Ku80 - chr2L 15768532 intergenic Ku80 -,wek - chr2L_12_15765001 chr2L_15765001 RAL-304_100b 659 chr2L 15773547 15773583 chr2L 15773653 15773689 INE-1 16 106 3.0 12.0 7.5 1.9 142 chr2L 15773547 intergenic CG31826 - chr2L 15773618 intergenic not near genes chr2L 15773689 intergenic not near genes chr2L_16_15770001 chr2L_15770001 RAL-304_100b 660 chr2L 15776377 15776411 chr2L 15776497 15776531 22 118 23.5 22.0 22.8 0.9 154 chr2L 15776377 intergenic CG43760 - chr2L 15776454 3` UTR CG43760 - chr2L 15776531 3` UTR CG43760 - chr2L_22_15775001 chr2L_15775001 RAL-304_100b 661 chr2L 15777810 15777829 chr2L 15778009 15778027 15 203 5.5 16.0 10.8 1.3 217 chr2L 15777810 intergenic not near genes chr2L 15777918 intergenic not near genes chr2L 15778027 intergenic not near genes chr2L_15_15775001 chr2L_15775001 RAL-304_100b 662 chr2L 15790161 15790217 chr2L 15790262 15790303 31 99 7.5 10.5 9.0 3.1 142 chr2L 15790161 intergenic CG18109 + chr2L 15790232 intergenic CG18109 + chr2L 15790303 intergenic CG18109 + chr2L_31_15790001 chr2L_15790001 RAL-304_100b 663 chr2L 15805591 15805609 chr2L 15805712 15805716 6 117 1.5 9.0 5.2 1.0 125 chr2L 15805591 intergenic not near genes chr2L 15805654 intergenic not near genes chr2L 15805716 intergenic not near genes chr2L_6_15805001 chr2L_15805001 RAL-304_100b 664 chr2L 15823327 15823371 chr2L 15823428 15823472 35 97 12.5 13.0 12.8 2.5 145 chr2L 15823327 intergenic CR44601 - chr2L 15823400 intergenic CR44601 - chr2L 15823472 intergenic not near genes chr2L_35_15820001 chr2L_15820001 RAL-304_100b 665 chr2L 15826871 15826893 chr2L 15829290 15829312 Tabor 8 2419 0.0 12.5 6.2 1.1 2441 chr2L 15826871 intergenic not near genes chr2L 15828092 intergenic not near genes chr2L 15829312 intergenic not near genes chr2L_8_15825001 chr2L_15825001 RAL-304_100b 666 chr2L 15887691 15887737 chr2L 15887849 15887895 39 155 12.5 16.5 14.5 2.5 204 chr2L 15887691 intergenic not near genes chr2L 15887793 intergenic not near genes chr2L 15887895 intergenic not near genes chr2L_39_15885001 chr2L_15885001 RAL-304_100b 667 chr2L 15906162 15906213 chr2L 15906270 15906327 45 111 4.0 13.5 8.8 4.6 165 chr2L 15906162 intron beat-Ib - chr2L 15906244 intron beat-Ib - chr2L 15906327 exon beat-Ib - chr2L_45_15905001 chr2L_15905001 RAL-304_100b 668 chr2L 15921794 15921827 chr2L 15921962 15921995 36 164 17.0 12.5 14.8 2.3 201 chr2L 15921794 intron beat-Ib - chr2L 15921894 intron beat-Ib - chr2L 15921995 intron beat-Ib - chr2L_36_15920001 chr2L_15920001 RAL-304_100b 669 chr2L 15935175 15935214 chr2L 15935289 15935329 9 110 9.5 5.5 7.5 1.1 154 chr2L 15935175 intron beat-Ib - chr2L 15935252 intron beat-Ib - chr2L 15935329 intron beat-Ib - chr2L_9_15935001 chr2L_15935001 RAL-304_100b 670 chr2L 15947137 15947148 chr2L 15947244 15947255 9 105 12.5 20.5 16.5 0.5 118 chr2L 15947137 intron beat-Ib - chr2L 15947196 intron beat-Ib - chr2L 15947255 intron beat-Ib - chr2L_9_15945001 chr2L_15945001 RAL-304_100b 671 chr2L 15947149 15947172 chr2L 15947236 15947259 19 95 12.5 13.5 13.0 1.4 110 chr2L 15947149 intron beat-Ib - chr2L 15947204 intron beat-Ib - chr2L 15947259 intron beat-Ib - chr2L_19_15945001 chr2L_15945001 RAL-304_100b 672 chr2L 15947173 15947185 chr2L 15947234 15947259 9 93 15.0 14.5 14.8 0.6 86 chr2L 15947173 intron beat-Ib - chr2L 15947216 intron beat-Ib - chr2L 15947259 intron beat-Ib - chr2L_9_15945001 chr2L_15945001 RAL-304_100b 673 chr2L 15950365 15950413 chr2L 15950468 15950491 14 95 0.5 2.5 1.5 5.6 126 chr2L 15950365 intron beat-Ib - chr2L 15950428 intron beat-Ib - chr2L 15950491 intron beat-Ib - chr2L_14_15950001 chr2L_15950001 RAL-304_100b 674 chr2L 15956000 15956005 chr2L 15957492 15957496 hobo 5 1492 29.5 24.0 26.8 0.2 1496 chr2L 15956000 intron beat-Ib - chr2L 15956748 intron beat-Ib - chr2L 15957496 intron beat-Ib - chr2L_5_15955001 chr2L_15955001 RAL-304_100b 675 chr2L 15956009 15956026 chr2L 15957491 15957513 hobo 9 1487 21.0 23.5 22.2 0.4 1504 chr2L 15956009 intron beat-Ib - chr2L 15956761 intron beat-Ib - chr2L 15957513 intron beat-Ib - chr2L_9_15955001 chr2L_15955001 RAL-304_100b 676 chr2L 15956027 15956057 chr2L 15957489 15957511 hobo 17 1481 17.0 22.0 19.5 0.8 1484 chr2L 15956027 intron beat-Ib - chr2L 15956769 intron beat-Ib - chr2L 15957511 intron beat-Ib - chr2L_17_15955001 chr2L_15955001 RAL-304_100b 677 chr2L 16005573 16005627 chr2L 16005684 16005718 28 108 8.0 11.0 9.5 2.7 145 chr2L 16005573 intron beat-Ic + chr2L 16005646 intron beat-Ic + chr2L 16005718 intron beat-Ic + chr2L_28_16005001 chr2L_16005001 RAL-304_100b 678 chr2L 16008682 16008694 chr2L 16008808 16008809 8 125 6.5 6.0 6.2 1.1 127 chr2L 16008682 intron beat-Ic + chr2L 16008746 intron beat-Ic + chr2L 16008809 intron beat-Ic + chr2L_8_16005001 chr2L_16005001 RAL-304_100b 679 chr2L 16027373 16027420 chr2L 16027474 16027521 16 99 3.5 5.5 4.5 2.9 148 chr2L 16027373 intron beat-Ic + chr2L 16027447 intron beat-Ic + chr2L 16027521 intron beat-Ic + chr2L_16_16025001 chr2L_16025001 RAL-304_100b 680 chr2L 16058104 16058151 chr2L 16058270 16058317 28 164 10.5 10.0 10.2 2.5 213 chr2L 16058104 intron beat-Ia + chr2L 16058210 intron beat-Ia + chr2L 16058317 intron beat-Ia + chr2L_28_16055001 chr2L_16055001 RAL-304_100b 681 chr2L 10176023 10176024 chr2L 16071771 16071771 4 5895748 75.5 88.5 82.0 0.0 5895748 chr2L 10176023 intron CG44153 - chr2L 13123897 intergenic not near genes chr2L 16071771 intron beat-Ia + chr2L_4_13120001 chr2L_13120001 RAL-304_100b 682 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 75 145889 84.0 75.0 79.5 0.9 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_75_16140001 chr2L_16140001 RAL-304_100b 683 chr2L 16141140 16141194 chr2L 16146372 16146392 copia 39 5230 6.0 10.5 8.2 4.2 5252 chr2L 16141140 intergenic not near genes chr2L 16143766 intergenic not near genes chr2L 16146392 intergenic not near genes chr2L_39_16140001 chr2L_16140001 RAL-304_100b 684 chr2L 16153728 16153762 chr2L 16160812 16160855 297 23 7092 10.5 11.0 10.8 1.9 7127 chr2L 16153728 intergenic not near genes chr2L 16157292 intergenic not near genes chr2L 16160855 intergenic not near genes chr2L_23_16155001 chr2L_16155001 RAL-304_100b 685 chr2L 16207047 16207088 chr2L 16207149 16207190 15 102 11.5 8.5 10.0 1.4 143 chr2L 16207047 intergenic not near genes chr2L 16207118 intergenic not near genes chr2L 16207190 intergenic not near genes chr2L_15_16205001 chr2L_16205001 RAL-304_100b 686 chr2L 16210482 16210498 chr2L 16210586 16210602 14 103 1.0 24.0 12.5 1.0 120 chr2L 16210482 intergenic not near genes chr2L 16210542 intergenic not near genes chr2L 16210602 intergenic not near genes chr2L_14_16210001 chr2L_16210001 RAL-304_100b 687 chr2L 16210500 16210520 chr2L 16210575 16210624 26 99 0.5 19.5 10.0 2.4 124 chr2L 16210500 intergenic not near genes chr2L 16210562 intergenic not near genes chr2L 16210624 intergenic not near genes chr2L_26_16210001 chr2L_16210001 RAL-304_100b 688 chr2L 9084336 9084340 chr2L 16217660 16217660 39 7133321 93.0 75.0 84.0 0.5 7133324 chr2L 9084336 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_39_12650001 chr2L_12650001 RAL-304_100b 689 chr2L 9723025 9723025 chr2L 16217660 16217660 4 6494635 52.5 75.0 63.8 0.1 6494635 chr2L 9723025 intron Nckx30C - chr2L 12970342 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_4_12970001 chr2L_12970001 RAL-304_100b 690 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 57 145889 84.0 75.0 79.5 0.7 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_57_16140001 chr2L_16140001 RAL-304_100b 691 chr2L 16234398 16234445 chr2L 16234502 16234543 26 103 12.5 2.0 7.2 3.2 145 chr2L 16234398 intron CG42817 + chr2L 16234470 intron CG42817 + chr2L 16234543 intron CG42817 + chr2L_26_16230001 chr2L_16230001 RAL-304_100b 692 chr2L 16252512 16252564 chr2L 16252617 16252669 29 107 68.5 73.5 71.0 0.4 157 chr2L 16252512 intron PRL-1 - chr2L 16252590 intron PRL-1 - chr2L 16252669 intron PRL-1 - chr2L_29_16250001 chr2L_16250001 RAL-304_100b 693 chr2L 16254870 16254918 chr2L 16255154 16255202 24 283 11.0 11.5 11.2 2.0 332 chr2L 16254870 intron PRL-1 - chr2L 16255036 intron PRL-1 - chr2L 16255202 intron PRL-1 - chr2L_24_16255001 chr2L_16255001 RAL-304_100b 694 chr2L 16280235 16280241 chr2L 16281428 16281437 1360 8 1195 53.0 24.0 38.5 0.2 1202 chr2L 16280235 intron crp - chr2L 16280836 intron crp - chr2L 16281437 intron crp - chr2L_8_16280001 chr2L_16280001 RAL-304_100b 695 chr2L 16280242 16280286 chr2L 16281425 16281467 1360 47 1190 20.0 23.0 21.5 2.1 1225 chr2L 16280242 intron crp - chr2L 16280854 intron crp - chr2L 16281467 intron crp - chr2L_47_16280001 chr2L_16280001 RAL-304_100b 696 chr2L 16354764 16354786 chr2L 16354867 16354903 18 116 4.5 9.0 6.8 2.3 139 chr2L 16354764 intergenic CaBP1 -,CG4455 + chr2L 16354834 intergenic CaBP1 -,CG4455 + chr2L 16354903 3` UTR CaBP1 - chr2L_18_16350001 chr2L_16350001 RAL-304_100b 697 chr2L 16363919 16363961 chr2L 16364190 16364232 9 270 4.0 8.5 6.2 1.2 313 chr2L 16363919 intergenic not near genes chr2L 16364076 intergenic not near genes chr2L 16364232 intergenic not near genes chr2L_9_16360001 chr2L_16360001 RAL-304_100b 698 chr2L 16375368 16375393 chr2L 16375484 16375508 9 115 28.5 0.0 14.2 0.6 140 chr2L 16375368 intergenic not near genes chr2L 16375438 intergenic not near genes chr2L 16375508 intergenic not near genes chr2L_9_16375001 chr2L_16375001 RAL-304_100b 699 chr2L 16391776 16391829 chr2L 16391877 16391930 24 96 6.5 1.0 3.8 5.0 154 chr2L 16391776 intergenic not near genes chr2L 16391853 intergenic not near genes chr2L 16391930 intergenic not near genes chr2L_24_16390001 chr2L_16390001 RAL-304_100b 700 chr2L 16407386 16407422 chr2L 16407541 16407577 29 154 19.5 11.5 15.5 1.8 191 chr2L 16407386 intron CG5888 - chr2L 16407482 intron CG5888 - chr2L 16407577 intron CG5888 - chr2L_29_16405001 chr2L_16405001 RAL-304_100b 701 chr2L 16408099 16408155 chr2L 16408231 16408278 6 130 0.0 6.0 3.0 1.5 179 chr2L 16408099 intron CG5888 - chr2L 16408188 intron CG5888 - chr2L 16408278 intron CG5888 - chr2L_6_16405001 chr2L_16405001 RAL-304_100b 702 chr2L 16435928 16435939 chr2L 16436035 16436046 6 107 25.0 19.0 22.0 0.3 118 chr2L 16435928 intron CG5888 - chr2L 16435987 intron CG5888 - chr2L 16436046 intron CG5888 - chr2L_6_16435001 chr2L_16435001 RAL-304_100b 703 chr2L 16435941 16435981 chr2L 16436033 16436088 37 101 13.5 18.0 15.8 2.2 147 chr2L 16435941 intron CG5888 - chr2L 16436014 intron CG5888 - chr2L 16436088 intron CG5888 - chr2L_37_16435001 chr2L_16435001 RAL-304_100b 704 chr2L 16458804 16458817 chr2L 16459025 16459038 9 221 11.5 7.0 9.2 0.9 234 chr2L 16458804 intergenic not near genes chr2L 16458921 intergenic not near genes chr2L 16459038 intergenic not near genes chr2L_9_16455001 chr2L_16455001 RAL-304_100b 705 chr2L 16504975 16504989 chr2L 16505110 16505124 14 135 0.5 18.5 9.5 1.3 149 chr2L 16504975 intron Tpr2 + chr2L 16505050 intron Tpr2 + chr2L 16505124 intron Tpr2 + chr2L_14_16505001 chr2L_16505001 RAL-304_100b 706 chr2L 16504991 16505017 chr2L 16505104 16505124 31 131 0.5 14.5 7.5 3.6 133 chr2L 16504991 intron Tpr2 + chr2L 16505058 intron Tpr2 + chr2L 16505124 intron Tpr2 + chr2L_31_16505001 chr2L_16505001 RAL-304_100b 707 chr2L 16507943 16507967 chr2L 16508056 16508080 13 113 0.0 16.5 8.2 1.4 137 chr2L 16507943 intergenic CG5953 -,Tpr2 + chr2L 16508012 intergenic CG5953 -,Tpr2 + chr2L 16508080 3` UTR CG5953 - chr2L_13_16505001 chr2L_16505001 RAL-304_100b 708 chr2L 16511960 16511995 chr2L 16519112 16519147 HMS-Beagle 10 7151 6.0 6.5 6.2 1.4 7187 chr2L 16511960 intron CG5953 - chr2L 16515554 intron CG5953 - chr2L 16519147 intron CG5953 - chr2L_10_16515001 chr2L_16515001 RAL-304_100b 709 chr2L 16524883 16524935 chr2L 16525159 16525198 36 279 4.5 8.5 6.5 4.8 315 chr2L 16524883 intron CG5953 - chr2L 16525040 intron CG5953 - chr2L 16525198 intron CG5953 - chr2L_36_16525001 chr2L_16525001 RAL-304_100b 710 chr2L 16544118 16544143 chr2L 16544205 16544247 23 100 21.0 15.5 18.2 1.2 129 chr2L 16544118 intergenic not near genes chr2L 16544182 intergenic not near genes chr2L 16544247 intergenic not near genes chr2L_23_16540001 chr2L_16540001 RAL-304_100b 711 chr2L 16544144 16544147 chr2L 16544198 16544201 10 90 20.5 15.0 17.8 0.5 57 chr2L 16544144 intergenic not near genes chr2L 16544172 intergenic not near genes chr2L 16544201 intergenic not near genes chr2L_10_16540001 chr2L_16540001 RAL-304_100b 712 chr2L 16548458 16548486 chr2L 16548605 16548632 6 146 13.5 0.0 6.8 0.8 174 chr2L 16548458 intron CG42389 + chr2L 16548545 intron CG42389 + chr2L 16548632 intron CG42389 + chr2L_6_16545001 chr2L_16545001 RAL-304_100b 713 chr2L 16573219 16573241 chr2L 16573327 16573349 13 104 36.0 30.5 33.2 0.4 130 chr2L 16573219 intron CG42389 + chr2L 16573284 intron CG42389 + chr2L 16573349 intron CG42389 + chr2L_13_16570001 chr2L_16570001 RAL-304_100b 714 chr2L 16573242 16573248 chr2L 16573325 16573341 8 97 33.5 30.5 32.0 0.2 99 chr2L 16573242 intron CG42389 + chr2L 16573292 intron CG42389 + chr2L 16573341 intron CG42389 + chr2L_8_16570001 chr2L_16570001 RAL-304_100b 715 chr2L 16573249 16573262 chr2L 16573322 16573360 21 94 24.5 29.5 27.0 0.8 111 chr2L 16573249 intron CG42389 + chr2L 16573304 intron CG42389 + chr2L 16573360 intron CG42389 + chr2L_21_16570001 chr2L_16570001 RAL-304_100b 716 chr2L 16697043 16697086 chr2L 16697261 16697304 27 217 7.5 0.0 3.8 5.6 261 chr2L 16697043 intron grp + chr2L 16697174 intron grp + chr2L 16697304 intron grp + chr2L_27_16695001 chr2L_16695001 RAL-304_100b 717 chr2L 16709056 16709104 chr2L 16709165 16709213 19 109 8.5 13.5 11.0 1.6 157 chr2L 16709056 intron CG31808 - chr2L 16709134 intron CG31808 - chr2L 16709213 intron CG31808 - chr2L_19_16705001 chr2L_16705001 RAL-304_100b 718 chr2L 16764944 16764999 chr2L 16765048 16765104 32 100 2.5 6.5 4.5 5.8 160 chr2L 16764944 intergenic not near genes chr2L 16765024 intergenic not near genes chr2L 16765104 intergenic not near genes chr2L_32_16765001 chr2L_16765001 RAL-304_100b 719 chr2L 16791200 16791246 chr2L 16791311 16791357 25 110 11.0 13.5 12.2 1.9 157 chr2L 16791200 intergenic CG17928 +,Cyt-b5-r - chr2L 16791278 intergenic CG17928 + chr2L 16791357 intergenic CG17928 + chr2L_25_16790001 chr2L_16790001 RAL-304_100b 720 chr2L 16796383 16796425 chr2L 16796513 16796533 26 127 14.0 11.5 12.8 1.9 150 chr2L 16796383 intergenic Ugt36Bb +,Ugt36Ba + chr2L 16796458 intergenic Ugt36Bb +,Ugt36Ba + chr2L 16796533 intergenic Ugt36Bb + chr2L_26_16795001 chr2L_16795001 RAL-304_100b 721 chr2L 16804403 16804443 chr2L 16804514 16804554 43 108 18.0 19.0 18.5 2.2 151 chr2L 16804403 intron CG13280 - chr2L 16804478 intron CG13280 - chr2L 16804554 intron CG13280 - chr2L_43_16800001 chr2L_16800001 RAL-304_100b 722 chr2L 16810981 16811038 chr2L 16811089 16811146 16 108 10.0 7.0 8.5 1.7 165 chr2L 16810981 intron,intron CG13280 -,CG13272 + chr2L 16811064 intron,intron CG13280 -,CG13272 + chr2L 16811146 intron,intron CG13280 -,CG13272 + chr2L_16_16810001 chr2L_16810001 RAL-304_100b 723 chr2L 16847779 16847900 chr2L 16853068 16853120 6 5267 10.0 3.0 6.5 0.8 5341 chr2L 16847779 intron CG13284 - chr2L 16850450 intron CG31810 - chr2L 16853120 intergenic CG31809 - chr2L_6_16850001 chr2L_16850001 RAL-304_100b 724 chr2L 16852411 16852453 chr2L 16852514 16852556 11 102 22.0 0.5 11.2 0.9 145 chr2L 16852411 intergenic CG31810 - chr2L 16852484 intergenic CG31810 - chr2L 16852556 intergenic CG31810 - chr2L_11_16850001 chr2L_16850001 RAL-304_100b 725 chr2L 16848647 16848648 chr2L 16853280 16853301 9 4636 39.0 23.5 31.2 0.3 4654 chr2L 16848647 5` UTR CG13284 - chr2L 16850974 intron CG31810 - chr2L 16853301 intergenic CG31809 - chr2L_9_16850001 chr2L_16850001 RAL-304_100b 726 chr2L 16919984 16920041 chr2L 16920088 16920145 51 99 6.0 11.5 8.8 5.2 161 chr2L 16919984 intergenic not near genes chr2L 16920064 intergenic not near genes chr2L 16920145 intergenic not near genes chr2L_51_16920001 chr2L_16920001 RAL-304_100b 727 chr2L 16939982 16939983 chr2L 16940075 16940086 4 98 33.0 30.5 31.8 0.1 104 chr2L 16939982 intergenic not near genes chr2L 16940034 intergenic not near genes chr2L 16940086 intergenic not near genes chr2L_4_16940001 chr2L_16940001 RAL-304_100b 728 chr2L 16939984 16939990 chr2L 16940071 16940093 5 99 31.5 27.0 29.2 0.2 109 chr2L 16939984 intergenic not near genes chr2L 16940038 intergenic not near genes chr2L 16940093 intergenic not near genes chr2L_5_16940001 chr2L_16940001 RAL-304_100b 729 chr2L 16939993 16940015 chr2L 16940070 16940118 25 92 14.5 26.5 20.5 1.2 125 chr2L 16939993 intergenic not near genes chr2L 16940056 intergenic not near genes chr2L 16940118 intergenic not near genes chr2L_25_16940001 chr2L_16940001 RAL-304_100b 730 chr2L 16944020 16944024 chr2L 16944132 16944136 6 112 13.0 18.0 15.5 0.4 116 chr2L 16944020 intergenic not near genes chr2L 16944078 intergenic not near genes chr2L 16944136 intergenic not near genes chr2L_6_16940001 chr2L_16940001 RAL-304_100b 731 chr2L 16949592 16949643 chr2L 16949701 16949742 26 109 7.0 14.0 10.5 2.3 150 chr2L 16949592 intron CR44393 - chr2L 16949667 intron CR44393 - chr2L 16949742 intron CR44393 - chr2L_26_16945001 chr2L_16945001 RAL-304_100b 732 chr2L 16952090 16952151 chr2L 16952204 16952248 23 108 0.5 13.0 6.8 2.9 158 chr2L 16952090 intergenic not near genes chr2L 16952169 intergenic not near genes chr2L 16952248 intergenic not near genes chr2L_23_16950001 chr2L_16950001 RAL-304_100b 733 chr2L 16958087 16958095 chr2L 16962900 16962908 Doc 4 4813 17.0 12.5 14.8 0.3 4821 chr2L 16958087 intergenic not near genes chr2L 16960498 intergenic not near genes chr2L 16962908 intergenic not near genes chr2L_4_16960001 chr2L_16960001 RAL-304_100b 734 chr2L 16958096 16958133 chr2L 16962899 16962946 Doc 21 4811 7.0 12.5 9.8 1.9 4850 chr2L 16958096 intergenic not near genes chr2L 16960521 intergenic not near genes chr2L 16962946 intergenic not near genes chr2L_21_16960001 chr2L_16960001 RAL-304_100b 735 chr2L 16968209 16968266 chr2L 16968324 16968351 45 112 11.5 13.5 12.5 3.3 142 chr2L 16968209 intergenic not near genes chr2L 16968280 intergenic not near genes chr2L 16968351 intergenic not near genes chr2L_45_16965001 chr2L_16965001 RAL-304_100b 736 chr2L 16975389 16975430 chr2L 16975506 16975561 40 121 13.5 13.0 13.2 2.8 172 chr2L 16975389 intron beat-IIIb + chr2L 16975475 intron beat-IIIb + chr2L 16975561 intron beat-IIIb + chr2L_40_16975001 chr2L_16975001 RAL-304_100b 737 chr2L 17000102 17000106 chr2L 17000246 17000250 7 146 29.0 14.0 21.5 0.3 148 chr2L 17000102 intergenic not near genes chr2L 17000176 intergenic not near genes chr2L 17000250 intergenic not near genes chr2L_7_17000001 chr2L_17000001 RAL-304_100b 738 chr2L 17000108 17000152 chr2L 17000245 17000260 32 143 13.0 14.0 13.5 2.2 152 chr2L 17000108 intergenic not near genes chr2L 17000184 intergenic not near genes chr2L 17000260 intergenic not near genes chr2L_32_17000001 chr2L_17000001 RAL-304_100b 739 chr2L 17018679 17018720 chr2L 17018780 17018821 7 101 13.5 1.0 7.2 0.9 142 chr2L 17018679 intergenic not near genes chr2L 17018750 intergenic not near genes chr2L 17018821 intergenic not near genes chr2L_7_17015001 chr2L_17015001 RAL-304_100b 740 chr2L 17032477 17032521 chr2L 17032587 17032631 25 107 7.5 10.0 8.8 2.6 154 chr2L 17032477 intergenic not near genes chr2L 17032554 intergenic not near genes chr2L 17032631 intergenic not near genes chr2L_25_17030001 chr2L_17030001 RAL-304_100b 741 chr2L 17033889 17033946 chr2L 17034000 17034057 46 109 6.5 6.0 6.2 6.4 168 chr2L 17033889 intergenic not near genes chr2L 17033973 intergenic not near genes chr2L 17034057 intergenic not near genes chr2L_46_17030001 chr2L_17030001 RAL-304_100b 742 chr2L 17050011 17050012 chr2L 17050107 17050124 4 106 29.0 17.5 23.2 0.2 113 chr2L 17050011 intergenic not near genes chr2L 17050068 intergenic not near genes chr2L 17050124 intergenic not near genes chr2L_4_17050001 chr2L_17050001 RAL-304_100b 743 chr2L 17050016 17050047 chr2L 17050103 17050159 27 96 12.5 15.0 13.8 1.8 143 chr2L 17050016 intergenic not near genes chr2L 17050088 intergenic not near genes chr2L 17050159 intergenic not near genes chr2L_27_17050001 chr2L_17050001 RAL-304_100b 744 chr2L 17052384 17052444 chr2L 17052521 17052575 28 136 4.0 5.5 4.8 4.8 191 chr2L 17052384 intergenic not near genes chr2L 17052480 intergenic not near genes chr2L 17052575 intergenic not near genes chr2L_28_17050001 chr2L_17050001 RAL-304_100b 745 chr2L 17053255 17053313 chr2L 17053690 17053748 37 434 7.0 9.0 8.0 4.1 493 chr2L 17053255 intergenic not near genes chr2L 17053502 intergenic not near genes chr2L 17053748 intergenic not near genes chr2L_37_17050001 chr2L_17050001 RAL-304_100b 746 chr2L 17062730 17062790 chr2L 17062837 17062887 22 103 7.5 9.0 8.2 2.4 157 chr2L 17062730 intergenic not near genes chr2L 17062808 intergenic not near genes chr2L 17062887 intergenic not near genes chr2L_22_17060001 chr2L_17060001 RAL-304_100b 747 chr2L 17070179 17070204 chr2L 17070296 17070325 13 119 14.5 6.5 10.5 1.1 146 chr2L 17070179 intergenic not near genes chr2L 17070252 intergenic not near genes chr2L 17070325 intergenic not near genes chr2L_13_17070001 chr2L_17070001 RAL-304_100b 748 chr2L 17070206 17070219 chr2L 17070294 17070309 10 106 9.5 6.5 8.0 1.1 103 chr2L 17070206 intergenic not near genes chr2L 17070258 intergenic not near genes chr2L 17070309 intergenic not near genes chr2L_10_17070001 chr2L_17070001 RAL-304_100b 749 chr2L 17073632 17073663 chr2L 17073970 17074001 16 336 33.5 9.5 21.5 0.7 369 chr2L 17073632 intergenic not near genes chr2L 17073816 intergenic not near genes chr2L 17074001 intergenic not near genes chr2L_16_17070001 chr2L_17070001 RAL-304_100b 750 chr2L 17087376 17087381 chr2L 17087500 17087524 5 135 22.0 10.0 16.0 0.3 148 chr2L 17087376 intergenic CG12620 + chr2L 17087450 intergenic CG12620 + chr2L 17087524 intergenic CG12620 + chr2L_5_17085001 chr2L_17085001 RAL-304_100b 751 chr2L 17087384 17087404 chr2L 17087496 17087547 19 133 9.5 10.0 9.8 1.8 163 chr2L 17087384 intergenic CG12620 + chr2L 17087466 intergenic CG12620 + chr2L 17087547 intergenic CG12620 + chr2L_19_17085001 chr2L_17085001 RAL-304_100b 752 chr2L 17118664 17118716 chr2L 17118774 17118828 20 109 1.0 10.0 5.5 3.1 164 chr2L 17118664 intergenic not near genes chr2L 17118746 intergenic not near genes chr2L 17118828 intergenic not near genes chr2L_20_17115001 chr2L_17115001 RAL-304_100b 753 chr2L 17122760 17122785 chr2L 17122861 17122881 27 104 28.0 14.0 21.0 1.2 121 chr2L 17122760 intergenic not near genes chr2L 17122820 intergenic CG31784 - chr2L 17122881 intergenic CG31784 - chr2L_27_17120001 chr2L_17120001 RAL-304_100b 754 chr2L 17122786 17122808 chr2L 17122858 17122918 28 102 12.5 13.5 13.0 2.0 132 chr2L 17122786 intergenic not near genes chr2L 17122852 intergenic CG31784 - chr2L 17122918 intergenic CG31784 - chr2L_28_17120001 chr2L_17120001 RAL-304_100b 755 chr2L 17167540 17167596 chr2L 17167806 17167813 pogo 33 262 13.0 8.5 10.8 2.8 273 chr2L 17167540 intron,intron CG34106 +,beat-IIIa + chr2L 17167676 intron,intron CG34106 +,beat-IIIa + chr2L 17167813 intron,intron CG34106 +,beat-IIIa + chr2L_33_17165001 chr2L_17165001 RAL-304_100b 756 chr2L 17199150 17199191 chr2L 17200637 17200683 hobo 12 1490 12.5 9.5 11.0 1.0 1533 chr2L 17199150 intron beat-IIIc - chr2L 17199916 intron beat-IIIc - chr2L 17200683 intron beat-IIIc - chr2L_12_17195001 chr2L_17195001 RAL-304_100b 757 chr2L 17226098 17226110 chr2L 17226181 17226208 7 100 12.5 9.5 11.0 0.6 110 chr2L 17226098 intron beat-IIIc - chr2L 17226153 intron beat-IIIc - chr2L 17226208 intron beat-IIIc - chr2L_7_17225001 chr2L_17225001 RAL-304_100b 758 chr2L 17234695 17234743 chr2L 17234826 17234874 22 124 18.0 43.5 30.8 0.7 179 chr2L 17234695 intron beat-IIIc - chr2L 17234784 intron beat-IIIc - chr2L 17234874 intron beat-IIIc - chr2L_22_17230001 chr2L_17230001 RAL-304_100b 759 chr2L 17261185 17261240 chr2L 17261301 17261350 5 112 0.5 11.5 6.0 0.7 165 chr2L 17261185 intergenic beat-IIIc - chr2L 17261268 intergenic not near genes chr2L 17261350 intergenic not near genes chr2L_5_17260001 chr2L_17260001 RAL-304_100b 760 chr2L 17264720 17264773 chr2L 17264825 17264878 35 104 16.5 14.5 15.5 2.1 158 chr2L 17264720 intergenic not near genes chr2L 17264799 intergenic not near genes chr2L 17264878 intergenic not near genes chr2L_35_17260001 chr2L_17260001 RAL-304_100b 761 chr2L 17273173 17273189 chr2L 17277977 17277987 F-element 15 4807 29.0 16.5 22.8 0.6 4814 chr2L 17273173 intergenic not near genes chr2L 17275580 intergenic not near genes chr2L 17277987 intergenic not near genes chr2L_15_17275001 chr2L_17275001 RAL-304_100b 762 chr2L 17273190 17273226 chr2L 17277972 17278002 F-element 33 4802 9.5 14.0 11.8 2.6 4812 chr2L 17273190 intergenic not near genes chr2L 17275596 intergenic not near genes chr2L 17278002 intergenic not near genes chr2L_33_17275001 chr2L_17275001 RAL-304_100b 763 chr2L 17292859 17292912 chr2L 17292962 17293015 52 97 12.0 16.0 14.0 3.5 156 chr2L 17292859 intergenic not near genes chr2L 17292937 intergenic not near genes chr2L 17293015 intergenic not near genes chr2L_52_17290001 chr2L_17290001 RAL-304_100b 764 chr2L 17294253 17294301 chr2L 17294536 17294592 30 285 22.5 9.0 15.8 1.8 339 chr2L 17294253 intergenic not near genes chr2L 17294422 intergenic not near genes chr2L 17294592 intergenic not near genes chr2L_30_17290001 chr2L_17290001 RAL-304_100b 765 chr2L 17304294 17304319 chr2L 17304406 17304431 16 112 7.0 10.0 8.5 1.7 137 chr2L 17304294 intergenic not near genes chr2L 17304362 intergenic not near genes chr2L 17304431 intergenic not near genes chr2L_16_17300001 chr2L_17300001 RAL-304_100b 766 chr2L 17319105 17319107 chr2L 17319196 17319208 4 98 21.5 16.5 19.0 0.2 103 chr2L 17319105 3` UTR CR45696 - chr2L 17319156 3` UTR CR45696 - chr2L 17319208 3` UTR CR45696 - chr2L_4_17315001 chr2L_17315001 RAL-304_100b 767 chr2L 17319110 17319134 chr2L 17319195 17319229 35 96 11.5 16.5 14.0 2.3 119 chr2L 17319110 3` UTR CR45696 - chr2L 17319170 3` UTR CR45696 - chr2L 17319229 3` UTR CR45696 - chr2L_35_17315001 chr2L_17315001 RAL-304_100b 768 chr2L 17319137 17319149 chr2L 17319200 17319219 10 84 9.0 19.5 14.2 0.7 82 chr2L 17319137 3` UTR CR45696 - chr2L 17319178 3` UTR CR45696 - chr2L 17319219 3` UTR CR45696 - chr2L_10_17315001 chr2L_17315001 RAL-304_100b 769 chr2L 17327885 17327929 chr2L 17327996 17328040 33 109 14.5 17.0 15.8 2.0 155 chr2L 17327885 intergenic not near genes chr2L 17327962 intergenic not near genes chr2L 17328040 intergenic not near genes chr2L_33_17325001 chr2L_17325001 RAL-304_100b 770 chr2L 17359997 17360051 chr2L 17360200 17360239 39 201 10.0 2.5 6.2 5.4 242 chr2L 17359997 intergenic not near genes chr2L 17360118 intergenic not near genes chr2L 17360239 intergenic not near genes chr2L_39_17360001 chr2L_17360001 RAL-304_100b 771 chr2L 17380429 17380483 chr2L 17380724 17380763 31 288 10.5 16.5 13.5 2.1 334 chr2L 17380429 intron Lrch - chr2L 17380596 intron Lrch - chr2L 17380763 intron Lrch - chr2L_31_17380001 chr2L_17380001 RAL-304_100b 772 chr2L 17432018 17432035 chr2L 17432140 17432167 1360 10 130 0.0 7.0 3.5 2.2 149 chr2L 17432018 intron Dif - chr2L 17432092 intron Dif - chr2L 17432167 intron Dif - chr2L_10_17430001 chr2L_17430001 RAL-304_100b 773 chr2L 17466414 17466445 chr2L 17466530 17466563 37 115 14.5 29.0 21.8 1.6 149 chr2L 17466414 intron BicD - chr2L 17466488 intron BicD - chr2L 17466563 intron BicD - chr2L_37_17465001 chr2L_17465001 RAL-304_100b 774 chr2L 17466447 17466457 chr2L 17466519 17466545 14 105 8.5 24.0 16.2 0.8 98 chr2L 17466447 intron BicD - chr2L 17466496 intron BicD - chr2L 17466545 intron BicD - chr2L_14_17465001 chr2L_17465001 RAL-304_100b 775 chr2L 17571148 17571161 chr2L 17571256 17571269 5 108 0.0 18.0 9.0 0.5 121 chr2L 17571148 intergenic not near genes chr2L 17571208 intergenic not near genes chr2L 17571269 intergenic not near genes chr2L_5_17570001 chr2L_17570001 RAL-304_100b 776 chr2L 17577707 17577735 chr2L 17577808 17577835 13 99 21.5 17.5 19.5 0.6 128 chr2L 17577707 intergenic not near genes chr2L 17577771 intergenic not near genes chr2L 17577835 intergenic not near genes chr2L_13_17575001 chr2L_17575001 RAL-304_100b 777 chr2L 17607460 17607470 chr2L 17607583 17607593 7 123 14.5 23.0 18.8 0.4 133 chr2L 17607460 intergenic CR44412 - chr2L 17607526 intergenic CR44412 - chr2L 17607593 intergenic CR44412 - chr2L_7_17605001 chr2L_17605001 RAL-304_100b 778 chr2L 17607471 17607474 chr2L 17607582 17607597 4 120 13.0 22.5 17.8 0.2 126 chr2L 17607471 intergenic CR44412 - chr2L 17607534 intergenic CR44412 - chr2L 17607597 intergenic CR44412 - chr2L_4_17605001 chr2L_17605001 RAL-304_100b 779 chr2L 17623346 17623391 chr2L 17623452 17623493 26 105 8.5 10.0 9.2 2.5 147 chr2L 17623346 intergenic not near genes chr2L 17623420 intergenic not near genes chr2L 17623493 intergenic not near genes chr2L_26_17620001 chr2L_17620001 RAL-304_100b 780 chr2L 17623395 17623398 chr2L 17623449 17623504 4 85 6.5 9.0 7.8 0.5 109 chr2L 17623395 intergenic not near genes chr2L 17623450 intergenic not near genes chr2L 17623504 intergenic not near genes chr2L_4_17620001 chr2L_17620001 RAL-304_100b 781 chr2L 17687495 17687500 chr2L 17692265 17692270 F-element 5 4770 11.5 13.0 12.2 0.4 4775 chr2L 17687495 intron CadN - chr2L 17689882 intron CadN - chr2L 17692270 intron CadN - chr2L_5_17685001 chr2L_17685001 RAL-304_100b 782 chr2L 17687501 17687522 chr2L 17692263 17692292 F-element 12 4768 5.0 12.5 8.8 1.2 4791 chr2L 17687501 intron CadN - chr2L 17689896 intron CadN - chr2L 17692292 intron CadN - chr2L_12_17685001 chr2L_17685001 RAL-304_100b 783 chr2L 17705312 17705370 chr2L 17705428 17705482 38 108 11.0 18.5 14.8 2.4 170 chr2L 17705312 intron,3` UTR CadN -,CG43231 + chr2L 17705397 intron,3` UTR CadN -,CG43231 + chr2L 17705482 intron,3` UTR CadN -,CG43231 + chr2L_38_17705001 chr2L_17705001 RAL-304_100b 784 chr2L 17723767 17723769 chr2L 17723885 17723887 4 118 18.0 7.5 12.8 0.3 120 chr2L 17723767 intron CadN - chr2L 17723827 intron CadN - chr2L 17723887 intron CadN - chr2L_4_17720001 chr2L_17720001 RAL-304_100b 785 chr2L 17723770 17723802 chr2L 17723882 17723895 22 114 8.5 7.0 7.8 2.5 125 chr2L 17723770 intron CadN - chr2L 17723832 intron CadN - chr2L 17723895 intron CadN - chr2L_22_17720001 chr2L_17720001 RAL-304_100b 786 chr2L 17727854 17727859 chr2L 17729335 17729351 hobo 4 1489 21.0 23.0 22.0 0.2 1497 chr2L 17727854 intron CadN - chr2L 17728602 intron CadN - chr2L 17729351 intron CadN - chr2L_4_17725001 chr2L_17725001 RAL-304_100b 787 chr2L 17727865 17727871 chr2L 17729342 17729347 hobo 10 1486 16.5 25.5 21.0 0.5 1482 chr2L 17727865 intron CadN - chr2L 17728606 intron CadN - chr2L 17729347 intron CadN - chr2L_10_17725001 chr2L_17725001 RAL-304_100b 788 chr2L 17769409 17769463 chr2L 17769532 17769586 13 120 6.0 6.0 6.0 1.9 177 chr2L 17769409 intron CadN - chr2L 17769498 intron CadN - chr2L 17769586 intron CadN - chr2L_13_17765001 chr2L_17765001 RAL-304_100b 789 chr2L 17773143 17773202 chr2L 17773325 17773384 38 180 12.5 4.5 8.5 4.0 241 chr2L 17773143 intron CadN - chr2L 17773264 intron CadN - chr2L 17773384 intron CadN - chr2L_38_17770001 chr2L_17770001 RAL-304_100b 790 chr2L 17819899 17819951 chr2L 17825127 17825179 copia 40 5226 11.0 16.5 13.8 2.7 5280 chr2L 17819899 intron CadN2 - chr2L 17822539 intron CadN2 - chr2L 17825179 intron CadN2 - chr2L_40_17820001 chr2L_17820001 RAL-304_100b 791 chr2L 17863615 17863631 chr2L 17863795 17863809 9 179 7.5 10.0 8.8 0.9 194 chr2L 17863615 intron CadN2 - chr2L 17863712 intron CadN2 - chr2L 17863809 intron CadN2 - chr2L_9_17860001 chr2L_17860001 RAL-304_100b 792 chr2L 17879972 17880029 chr2L 17880084 17880141 59 110 15.5 15.5 15.5 3.6 169 chr2L 17879972 intergenic not near genes chr2L 17880056 intergenic not near genes chr2L 17880141 intergenic not near genes chr2L_59_17880001 chr2L_17880001 RAL-304_100b 793 chr2L 17911937 17911947 chr2L 17914140 17914143 pogo 6 2202 33.5 12.5 23.0 0.2 2206 chr2L 17911937 intergenic not near genes chr2L 17913040 intergenic not near genes chr2L 17914143 intergenic CG43271 - chr2L_6_17910001 chr2L_17910001 RAL-304_100b 794 chr2L 17911951 17911988 chr2L 17914138 17914191 pogo 25 2201 13.5 11.5 12.5 1.9 2240 chr2L 17911951 intergenic not near genes chr2L 17913071 intergenic not near genes chr2L 17914191 intergenic CG43271 - chr2L_25_17910001 chr2L_17910001 RAL-304_100b 795 chr2L 17938669 17938722 chr2L 17938775 17938833 19 108 8.5 2.0 5.2 3.1 164 chr2L 17938669 intergenic CR44399 - chr2L 17938751 intergenic CR44399 - chr2L 17938833 intergenic CR44399 - chr2L_19_17935001 chr2L_17935001 RAL-304_100b 796 chr2L 17941826 17941872 chr2L 17941935 17941981 45 103 7.0 18.5 12.8 3.3 155 chr2L 17941826 intergenic not near genes chr2L 17941904 intergenic not near genes chr2L 17941981 intergenic not near genes chr2L_45_17940001 chr2L_17940001 RAL-304_100b 797 chr2L 17943873 17944143 chr2L 17943995 17944246 49 111 15.0 12.5 13.8 3.3 373 chr2L 17943873 intergenic not near genes chr2L 17944060 intergenic not near genes chr2L 17944246 intergenic not near genes chr2L_49_17940001 chr2L_17940001 RAL-304_100b 798 chr2L 17951918 17951974 chr2L 17953410 17953466 hobo 43 1491 14.0 12.0 13.0 3.1 1548 chr2L 17951918 intergenic CR44398 -,CR44397 - chr2L 17952692 intergenic not near genes chr2L 17953466 intergenic not near genes chr2L_43_17950001 chr2L_17950001 RAL-304_100b 799 chr2L 18039868 18039903 chr2L 18039962 18040009 31 102 5.0 12.5 8.8 3.2 141 chr2L 18039868 intron rdo + chr2L 18039938 intron rdo + chr2L 18040009 intron rdo + chr2L_31_18035001 chr2L_18035001 RAL-304_100b 800 chr2L 18040789 18040848 chr2L 18040903 18040913 69 110 10.5 18.0 14.2 4.5 124 chr2L 18040789 intron rdo + chr2L 18040851 intron rdo + chr2L 18040913 intron rdo + chr2L_69_18040001 chr2L_18040001 RAL-304_100b 801 chr2L 18051860 18051905 chr2L 18061022 18061031 roo 33 9163 18.5 13.0 15.8 2.0 9171 chr2L 18051860 intron rdo + chr2L 18056446 intron rdo + chr2L 18061031 intron rdo + chr2L_33_18055001 chr2L_18055001 RAL-304_100b 802 chr2L 18111216 18111258 chr2L 18111332 18111354 23 112 21.5 12.0 16.8 1.3 138 chr2L 18111216 intergenic not near genes chr2L 18111285 intergenic not near genes chr2L 18111354 intergenic not near genes chr2L_23_18110001 chr2L_18110001 RAL-304_100b 803 chr2L 18138447 18138465 chr2L 18138549 18138565 6 102 6.5 8.0 7.2 0.7 118 chr2L 18138447 intergenic Socs36E -,kel - chr2L 18138506 intergenic Socs36E -,kel - chr2L 18138565 intergenic Socs36E -,kel - chr2L_6_18135001 chr2L_18135001 RAL-304_100b 804 chr2L 18235052 18235057 chr2L 18235206 18235214 5 156 50.0 33.5 41.8 0.1 162 chr2L 18235052 intron CG42750 - chr2L 18235133 intron CG42750 - chr2L 18235214 intron CG42750 - chr2L_5_18235001 chr2L_18235001 RAL-304_100b 805 chr2L 18235059 18235071 chr2L 18235193 18235196 19 136 39.0 24.0 31.5 0.6 137 chr2L 18235059 intron CG42750 - chr2L 18235128 intron CG42750 - chr2L 18235196 intron CG42750 - chr2L_19_18235001 chr2L_18235001 RAL-304_100b 806 chr2L 18235073 18235079 chr2L 18235199 18235230 15 141 31.0 30.0 30.5 0.5 157 chr2L 18235073 intron CG42750 - chr2L 18235152 intron CG42750 - chr2L 18235230 intron CG42750 - chr2L_15_18235001 chr2L_18235001 RAL-304_100b 807 chr2L 18235080 18235097 chr2L 18235197 18235239 29 132 12.0 28.0 20.0 1.4 159 chr2L 18235080 intron CG42750 - chr2L 18235160 intron CG42750 - chr2L 18235239 intron CG42750 - chr2L_29_18235001 chr2L_18235001 RAL-304_100b 808 chr2L 18264036 18264093 chr2L 18264138 18264194 29 99 10.5 12.5 11.5 2.3 158 chr2L 18264036 intron CG42750 - chr2L 18264115 intron CG42750 - chr2L 18264194 intron CG42750 - chr2L_29_18260001 chr2L_18260001 RAL-304_100b 809 chr2L 18274015 18274073 chr2L 18274126 18274184 50 109 14.5 15.0 14.8 3.2 169 chr2L 18274015 intron CG42750 - chr2L 18274100 intron CG42750 - chr2L 18274184 intron CG42750 - chr2L_50_18270001 chr2L_18270001 RAL-304_100b 810 chr2L 18281749 18281762 chr2L 18281869 18281882 9 119 29.5 8.5 19.0 0.5 133 chr2L 18281749 intergenic not near genes chr2L 18281816 intergenic not near genes chr2L 18281882 intergenic not near genes chr2L_9_18280001 chr2L_18280001 RAL-304_100b 811 chr2L 18281763 18281792 chr2L 18281868 18281911 22 116 17.5 8.5 13.0 1.6 148 chr2L 18281763 intergenic not near genes chr2L 18281837 intergenic not near genes chr2L 18281911 intergenic not near genes chr2L_22_18280001 chr2L_18280001 RAL-304_100b 812 chr2L 18281793 18281806 chr2L 18281867 18281912 9 109 9.5 8.0 8.8 0.9 119 chr2L 18281793 intergenic not near genes chr2L 18281852 intergenic not near genes chr2L 18281912 intergenic not near genes chr2L_9_18280001 chr2L_18280001 RAL-304_100b 813 chr2L 18291503 18291553 chr2L 18291626 18291660 25 121 8.0 0.5 4.2 4.8 157 chr2L 18291503 intergenic CG43362 -,CR44693 +,CR44696 - chr2L 18291582 intergenic CR44693 +,CG43362 -,CR44696 - chr2L 18291660 intergenic CR44693 +,CG43362 -,CR44696 - chr2L_25_18290001 chr2L_18290001 RAL-304_100b 814 chr2L 18307872 18307916 chr2L 18307974 18308018 22 102 12.0 12.0 12.0 1.7 146 chr2L 18307872 intergenic CR43353 - chr2L 18307945 intergenic CR43353 - chr2L 18308018 intergenic CR43353 - chr2L_22_18305001 chr2L_18305001 RAL-304_100b 815 chr2L 18354647 18354703 chr2L 18354755 18354793 35 103 12.0 7.5 9.8 3.2 146 chr2L 18354647 intron Fas3 + chr2L 18354720 intron Fas3 + chr2L 18354793 intron Fas3 + chr2L_35_18350001 chr2L_18350001 RAL-304_100b 816 chr2L 18408004 18408060 chr2L 18412813 18412877 Doc 27 4807 9.5 0.0 4.8 4.7 4873 chr2L 18408004 intergenic not near genes chr2L 18410440 intergenic not near genes chr2L 18412877 intergenic not near genes chr2L_27_18410001 chr2L_18410001 RAL-304_100b 817 chr2L 18439138 18439195 chr2L 18439323 18439380 38 181 8.0 10.5 9.2 3.7 242 chr2L 18439138 intergenic not near genes chr2L 18439259 intergenic not near genes chr2L 18439380 intergenic not near genes chr2L_38_18435001 chr2L_18435001 RAL-304_100b 818 chr2L 18440297 18440356 chr2L 18440428 18440487 32 127 10.5 9.5 10.0 2.9 190 chr2L 18440297 intergenic not near genes chr2L 18440392 intergenic not near genes chr2L 18440487 intergenic not near genes chr2L_32_18440001 chr2L_18440001 RAL-304_100b 819 chr2L 18443837 18443886 chr2L 18443942 18443991 10 104 3.5 7.0 5.2 1.6 154 chr2L 18443837 intergenic not near genes chr2L 18443914 intergenic not near genes chr2L 18443991 intergenic not near genes chr2L_10_18440001 chr2L_18440001 RAL-304_100b 820 chr2L 18538543 18538595 chr2L 18538649 18538701 30 105 1.0 17.0 9.0 3.0 158 chr2L 18538543 intron Pde11 - chr2L 18538622 intron Pde11 - chr2L 18538701 intron Pde11 - chr2L_30_18535001 chr2L_18535001 RAL-304_100b 821 chr2L 18551915 18551969 chr2L 18552221 18552277 53 306 11.5 15.0 13.2 3.7 362 chr2L 18551915 intron Pde11 - chr2L 18552096 intron Pde11 - chr2L 18552277 intron Pde11 - chr2L_53_18550001 chr2L_18550001 RAL-304_100b 822 chr2L 18575604 18575613 chr2L 18575726 18575733 8 122 13.5 0.0 6.8 1.0 129 chr2L 18575604 intron Pde11 - chr2L 18575668 intron Pde11 - chr2L 18575733 intron Pde11 - chr2L_8_18575001 chr2L_18575001 RAL-304_100b 823 chr2L 16217660 16217660 chr2L 18622713 18622719 11 2405058 74.5 96.5 85.5 0.1 2405059 chr2L 16217660 intergenic not near genes chr2L 17420190 intron Dif - chr2L 18622719 intron MESR3 + chr2L_11_17420001 chr2L_17420001 RAL-304_100b 824 chr2L 18811393 18811397 chr2L 18811500 18811504 4 107 32.0 1.5 16.8 0.2 111 chr2L 18811393 intergenic CG10570 -,CG42502 - chr2L 18811448 intergenic CG10570 -,CG42502 - chr2L 18811504 intergenic not near genes chr2L_4_18810001 chr2L_18810001 RAL-304_100b 825 chr2L 18811407 18811433 chr2L 18811487 18811540 14 105 13.5 0.5 7.0 1.8 133 chr2L 18811407 intergenic CG10570 -,CG42502 - chr2L 18811474 intergenic CG10570 -,CG42502 - chr2L 18811540 intergenic not near genes chr2L_14_18810001 chr2L_18810001 RAL-304_100b 826 chr2L 18812532 18812589 chr2L 18812820 18812877 50 285 3.0 12.0 7.5 5.9 345 chr2L 18812532 intergenic CG17325 +,CG42305 + chr2L 18812704 5` UTR,5` UTR CG17325 +,CG42305 + chr2L 18812877 5` UTR,5` UTR CG17325 +,CG42305 + chr2L_50_18810001 chr2L_18810001 RAL-304_100b 827 chr2L 18898377 18898426 chr2L 18898477 18898487 44 102 14.5 1.0 7.8 5.0 110 chr2L 18898377 intergenic not near genes chr2L 18898432 intergenic not near genes chr2L 18898487 intergenic not near genes chr2L_44_18895001 chr2L_18895001 RAL-304_100b 828 chr2L 18984081 18984139 chr2L 18984198 18984256 49 113 11.0 11.5 11.2 4.0 175 chr2L 18984081 intron Swip-1 - chr2L 18984168 intron Swip-1 - chr2L 18984256 intron Swip-1 - chr2L_49_18980001 chr2L_18980001 RAL-304_100b 829 chr2L 19016216 19016275 chr2L 19016337 19016394 29 118 11.0 5.0 8.0 3.2 178 chr2L 19016216 intergenic not near genes chr2L 19016305 intergenic not near genes chr2L 19016394 intergenic not near genes chr2L_29_19015001 chr2L_19015001 RAL-304_100b 830 chr2L 19024096 19024096 chr2L 21768291 21768291 8 2744195 89.5 104.0 96.8 0.1 2744195 chr2L 19024096 3` UTR CR43700 - chr2L 20396194 intron CG10947 - chr2L 21768291 intron CG31612 - chr2L_8_20395001 chr2L_20395001 RAL-304_100b 831 chr2L 19024097 19024097 chr2L 21768291 21768291 12 2744194 89.5 104.0 96.8 0.1 2744194 chr2L 19024097 3` UTR CR43700 - chr2L 20396194 intron CG10947 - chr2L 21768291 intron CG31612 - chr2L_12_20395001 chr2L_20395001 RAL-304_100b 832 chr2L 19035899 19035948 chr2L 19036006 19036061 30 104 14.5 0.5 7.5 3.5 162 chr2L 19035899 intron mib2 + chr2L 19035980 intron mib2 + chr2L 19036061 intron mib2 + chr2L_30_19035001 chr2L_19035001 RAL-304_100b 833 chr2L 19121015 19121066 chr2L 19121118 19121169 47 100 10.5 10.0 10.2 4.2 154 chr2L 19121015 intergenic l(2)37Cc - chr2L 19121092 intergenic l(2)37Cc - chr2L 19121169 intergenic l(2)37Cc - chr2L_47_19120001 chr2L_19120001 RAL-304_100b 834 chr2L 19121533 19121566 chr2L 19121634 19121671 46 98 26.0 42.0 34.0 1.3 138 chr2L 19121533 3` UTR l(2)37Cc - chr2L 19121602 3` UTR l(2)37Cc - chr2L 19121671 3` UTR l(2)37Cc - chr2L_46_19120001 chr2L_19120001 RAL-304_100b 835 chr2L 19145159 19145196 chr2L 19145269 19145292 26 102 30.5 35.0 32.8 0.8 133 chr2L 19145159 intron brat + chr2L 19145226 intron brat + chr2L 19145292 intron brat + chr2L_26_19145001 chr2L_19145001 RAL-304_100b 836 chr2L 19147245 19147261 chr2L 19147385 19147401 11 140 26.5 0.0 13.2 0.8 156 chr2L 19147245 intron brat + chr2L 19147323 intron brat + chr2L 19147401 intron brat + chr2L_11_19145001 chr2L_19145001 RAL-304_100b 837 chr2L 19147281 19147292 chr2L 19154403 19154414 297 7 7122 11.5 12.0 11.8 0.5 7133 chr2L 19147281 intron brat + chr2L 19150848 intron brat + chr2L 19154414 intron brat + chr2L_7_19150001 chr2L_19150001 RAL-304_100b 838 chr2L 19147298 19147398 chr2L 19154412 19154457 297 16 7072 0.0 15.5 7.8 1.8 7159 chr2L 19147298 intron brat + chr2L 19150878 intron brat + chr2L 19154457 intron brat + chr2L_16_19150001 chr2L_19150001 RAL-304_100b 839 chr2L 19270873 19270928 chr2L 19270988 19271035 11 114 0.0 16.5 8.2 1.2 162 chr2L 19270873 intron CR44190 - chr2L 19270954 intron CR44190 - chr2L 19271035 intron CR44190 - chr2L_11_19270001 chr2L_19270001 RAL-304_100b 840 chr2L 19331642 19331647 chr2L 19331746 19331751 6 103 47.5 15.0 31.2 0.2 109 chr2L 19331642 intergenic not near genes chr2L 19331696 intergenic not near genes chr2L 19331751 intergenic not near genes chr2L_6_19330001 chr2L_19330001 RAL-304_100b 841 chr2L 19331648 19331698 chr2L 19331741 19331802 44 94 15.5 13.5 14.5 2.8 154 chr2L 19331648 intergenic not near genes chr2L 19331725 intergenic not near genes chr2L 19331802 intergenic not near genes chr2L_44_19330001 chr2L_19330001 RAL-304_100b 842 chr2L 19344996 19345003 chr2L 19357228 19357237 blood 5 12231 39.5 20.5 30.0 0.2 12241 chr2L 19344996 intron dnt - chr2L 19351116 intron dnt - chr2L 19357237 intron dnt - chr2L_5_19350001 chr2L_19350001 RAL-304_100b 843 chr2L 19345006 19345049 chr2L 19357226 19357234 blood 51 12228 13.5 19.5 16.5 2.9 12228 chr2L 19345006 intron dnt - chr2L 19351120 intron dnt - chr2L 19357234 intron dnt - chr2L_51_19350001 chr2L_19350001 RAL-304_100b 844 chr2L 19357520 19357569 chr2L 19357635 19357684 60 111 8.5 16.5 12.5 4.4 164 chr2L 19357520 intron dnt - chr2L 19357602 intron dnt - chr2L 19357684 intron dnt - chr2L_60_19355001 chr2L_19355001 RAL-304_100b 845 chr2L 19374472 19374520 chr2L 19374606 19374654 38 132 11.0 9.5 10.2 3.4 182 chr2L 19374472 intergenic not near genes chr2L 19374563 intergenic not near genes chr2L 19374654 intergenic not near genes chr2L_38_19370001 chr2L_19370001 RAL-304_100b 846 chr2L 19405592 19405636 chr2L 19405707 19405744 24 113 10.5 9.5 10.0 2.2 152 chr2L 19405592 intron Pax - chr2L 19405668 intron Pax - chr2L 19405744 intron Pax - chr2L_24_19405001 chr2L_19405001 RAL-304_100b 847 chr2L 19407691 19407740 chr2L 19407913 19407962 47 219 13.0 15.5 14.2 3.1 271 chr2L 19407691 intron Pax - chr2L 19407826 intron Pax - chr2L 19407962 intron Pax - chr2L_47_19405001 chr2L_19405001 RAL-304_100b 848 chr2L 19427440 19427469 chr2L 19445614 19445647 5 18172 96.5 93.5 95.0 0.1 18207 chr2L 19427440 intron,exon CG13085 +,CG16771 + chr2L 19436544 exon CG10237 - chr2L 19445647 exon RanGAP + chr2L_5_19435001 chr2L_19435001 RAL-304_100b 849 chr2L 19437499 19437510 chr2L 19437615 19437627 14 117 20.0 13.0 16.5 0.8 128 chr2L 19437499 intron CG10237 - chr2L 19437563 intron CG10237 - chr2L 19437627 intron CG10237 - chr2L_14_19435001 chr2L_19435001 RAL-304_100b 850 chr2L 19437511 19437532 chr2L 19437613 19437649 15 116 9.0 11.5 10.2 1.3 138 chr2L 19437511 intron CG10237 - chr2L 19437580 intron CG10237 - chr2L 19437649 intron CG10237 - chr2L_15_19435001 chr2L_19435001 RAL-304_100b 851 chr2L 19441841 19441897 chr2L 19441947 19441976 28 102 7.5 12.0 9.8 2.6 135 chr2L 19441841 intron CG10237 - chr2L 19441908 intron CG10237 - chr2L 19441976 intron,5` UTR CG10237 -,RanGAP + chr2L_28_19440001 chr2L_19440001 RAL-304_100b 852 chr2L 19559403 19559414 chr2L 19559499 19559500 4 95 4.0 0.0 2.0 1.3 97 chr2L 19559403 exon Tep5 + chr2L 19559452 exon Tep5 + chr2L 19559500 exon Tep5 + chr2L_4_19555001 chr2L_19555001 RAL-304_100b 853 chr2L 19559980 19559994 chr2L 19560258 19560272 11 278 28.0 11.5 19.8 0.5 292 chr2L 19559980 exon Tep5 + chr2L 19560126 exon Tep5 + chr2L 19560272 intron Tep5 + chr2L_11_19560001 chr2L_19560001 RAL-304_100b 854 chr2L 19559995 19560034 chr2L 19560257 19560311 27 275 6.0 10.5 8.2 2.9 316 chr2L 19559995 exon Tep5 + chr2L 19560153 exon Tep5 + chr2L 19560311 intron Tep5 + chr2L_27_19560001 chr2L_19560001 RAL-304_100b 855 chr2L 19560812 19560854 chr2L 19560917 19560954 26 104 19.0 1.0 10.0 2.4 142 chr2L 19560812 exon Tep5 + chr2L 19560883 intron Tep5 + chr2L 19560954 exon Tep5 + chr2L_26_19560001 chr2L_19560001 RAL-304_100b 856 chr2L 19579066 19579121 chr2L 19579172 19579226 40 103 10.0 9.5 9.8 3.7 160 chr2L 19579066 3` UTR msb1l + chr2L 19579146 3` UTR CG10268 - chr2L 19579226 3` UTR CG10268 - chr2L_40_19575001 chr2L_19575001 RAL-304_100b 857 chr2L 19601548 19601599 chr2L 19601650 19601696 26 99 6.0 9.5 7.8 3.0 148 chr2L 19601548 intron,intron Lar +,CR44978 - chr2L 19601622 intron,intron Lar +,CR44978 - chr2L 19601696 intron,intron Lar +,CR44978 - chr2L_26_19600001 chr2L_19600001 RAL-304_100b 858 chr2L 19620070 19620085 chr2L 19621084 19621099 jockey 15 1013 47.0 13.5 30.2 0.5 1029 chr2L 19620070 intron Lar + chr2L 19620584 intron Lar + chr2L 19621099 intron Lar + chr2L_15_19620001 chr2L_19620001 RAL-304_100b 859 chr2L 19620086 19620128 chr2L 19621078 19621142 jockey 48 1007 23.0 13.0 18.0 2.5 1056 chr2L 19620086 intron Lar + chr2L 19620614 intron Lar + chr2L 19621142 intron Lar + chr2L_48_19620001 chr2L_19620001 RAL-304_100b 860 chr2L 19652545 19652604 chr2L 19674006 19674045 opus 37 21458 10.0 11.5 10.8 3.1 21500 chr2L 19652545 intron Lar + chr2L 19663295 intron Lar + chr2L 19674045 intron Lar + chr2L_37_19660001 chr2L_19660001 RAL-304_100b 861 chr2L 19703517 19703549 chr2L 19712678 19712706 roo 28 9157 27.5 10.5 19.0 1.4 9189 chr2L 19703517 intron Lar + chr2L 19708112 intron Lar + chr2L 19712706 intron Lar + chr2L_28_19705001 chr2L_19705001 RAL-304_100b 862 chr2L 19703550 19703568 chr2L 19712676 19712728 roo 23 9152 19.0 10.5 14.8 1.5 9178 chr2L 19703550 intron Lar + chr2L 19708139 intron Lar + chr2L 19712728 intron Lar + chr2L_23_19705001 chr2L_19705001 RAL-304_100b 863 chr2L 19737329 19737388 chr2L 19740823 19740882 1360 65 3483 10.5 10.5 10.5 5.7 3553 chr2L 19737329 intergenic Nf-YB + chr2L 19739106 intergenic not near genes chr2L 19740882 intergenic not near genes chr2L_65_19735001 chr2L_19735001 RAL-304_100b 864 chr2L 19754847 19754905 chr2L 19754956 19755012 66 103 16.5 16.0 16.2 3.8 165 chr2L 19754847 intron CG10631 - chr2L 19754930 intron CG10631 - chr2L 19755012 intron CG10631 - chr2L_66_19750001 chr2L_19750001 RAL-304_100b 865 chr2L 19762786 19762836 chr2L 19763049 19763103 pogo 41 264 24.5 11.5 18.0 2.2 317 chr2L 19762786 exon fbp - chr2L 19762944 intron fbp - chr2L 19763103 intron fbp - chr2L_41_19760001 chr2L_19760001 RAL-304_100b 866 chr2L 19773137 19773173 chr2L 19773249 19773285 23 112 18.5 9.0 13.8 1.6 148 chr2L 19773137 intergenic not near genes chr2L 19773211 intergenic not near genes chr2L 19773285 intergenic not near genes chr2L_23_19770001 chr2L_19770001 RAL-304_100b 867 chr2L 19773174 19773189 chr2L 19773248 19773291 13 107 14.0 8.0 11.0 1.1 117 chr2L 19773174 intergenic not near genes chr2L 19773232 intergenic not near genes chr2L 19773291 intergenic not near genes chr2L_13_19770001 chr2L_19770001 RAL-304_100b 868 chr2L 19776636 19776659 chr2L 19776741 19776749 13 102 22.5 18.0 20.2 0.6 113 chr2L 19776636 3` UTR CdGAPr - chr2L 19776692 3` UTR CdGAPr - chr2L 19776749 3` UTR CdGAPr - chr2L_13_19775001 chr2L_19775001 RAL-304_100b 869 chr2L 19824395 19824436 chr2L 19824503 19824544 42 107 8.5 16.0 12.2 3.2 149 chr2L 19824395 intron sick + chr2L 19824470 intron sick + chr2L 19824544 intron sick + chr2L_42_19820001 chr2L_19820001 RAL-304_100b 870 chr2L 19837254 19837307 chr2L 19837359 19837388 44 100 15.5 22.0 18.8 2.2 134 chr2L 19837254 intron sick + chr2L 19837321 intron sick + chr2L 19837388 intron sick + chr2L_44_19835001 chr2L_19835001 RAL-304_100b 871 chr2L 19846235 19846237 chr2L 19846337 19846343 4 105 4.5 21.0 12.8 0.3 108 chr2L 19846235 intron sick + chr2L 19846289 intron sick + chr2L 19846343 intron sick + chr2L_4_19845001 chr2L_19845001 RAL-304_100b 872 chr2L 19846240 19846276 chr2L 19846325 19846357 36 99 1.5 13.5 7.5 4.2 117 chr2L 19846240 intron sick + chr2L 19846298 intron sick + chr2L 19846357 intron sick + chr2L_36_19845001 chr2L_19845001 RAL-304_100b 873 chr2L 19901463 19901518 chr2L 19901591 19901641 46 124 12.5 13.0 12.8 3.3 178 chr2L 19901463 intron sick + chr2L 19901552 intron sick + chr2L 19901641 intron sick + chr2L_46_19900001 chr2L_19900001 RAL-304_100b 874 chr2L 19961716 19961774 chr2L 19961828 19961869 55 109 10.0 22.0 16.0 3.2 153 chr2L 19961716 intergenic CG42866 -,CG13965 - chr2L 19961792 3` UTR CG13965 - chr2L 19961869 exon CG13965 - chr2L_55_19960001 chr2L_19960001 RAL-304_100b 875 chr2L 19994582 19994657 chr2L 19994820 19994841 34 218 0.0 16.0 8.0 3.8 259 chr2L 19994582 intron CG43861 - chr2L 19994712 intron CG43861 - chr2L 19994841 intron CG43861 - chr2L_34_19990001 chr2L_19990001 RAL-304_100b 876 chr2L 20005849 20005869 chr2L 20010950 20010970 flea 12 5100 17.0 16.0 16.5 0.7 5121 chr2L 20005849 intron CG43861 - chr2L 20008410 intron CG43861 - chr2L 20010970 intron CG43861 - chr2L_12_20005001 chr2L_20005001 RAL-304_100b 877 chr2L 20005870 20005903 chr2L 20010947 20011004 flea 35 5097 8.5 14.5 11.5 2.8 5134 chr2L 20005870 intron CG43861 - chr2L 20008437 intron CG43861 - chr2L 20011004 intron CG43861 - chr2L_35_20005001 chr2L_20005001 RAL-304_100b 878 chr2L 20045182 20045202 chr2L 20045290 20045294 7 105 1.5 17.5 9.5 0.7 112 chr2L 20045182 intron sNPF + chr2L 20045238 intron sNPF + chr2L 20045294 intron sNPF + chr2L_7_20045001 chr2L_20045001 RAL-304_100b 879 chr2L 20057025 20057076 chr2L 20057127 20057178 31 99 12.0 12.0 12.0 2.4 153 chr2L 20057025 intergenic not near genes chr2L 20057102 intergenic not near genes chr2L 20057178 intergenic not near genes chr2L_31_20055001 chr2L_20055001 RAL-304_100b 880 chr2L 20067565 20067613 chr2L 20067690 20067713 36 127 11.0 8.0 9.5 3.4 148 chr2L 20067565 intron bwa + chr2L 20067639 intron bwa + chr2L 20067713 intron bwa + chr2L_36_20065001 chr2L_20065001 RAL-304_100b 881 chr2L 20085443 20085452 chr2L 20085560 20085569 10 116 3.5 19.0 11.2 0.8 126 chr2L 20085443 intron neb + chr2L 20085506 intron neb + chr2L 20085569 intron neb + chr2L_10_20085001 chr2L_20085001 RAL-304_100b 882 chr2L 20085453 20085499 chr2L 20085558 20085616 53 111 3.0 18.0 10.5 4.6 163 chr2L 20085453 intron neb + chr2L 20085534 intron neb + chr2L 20085616 intron neb + chr2L_53_20085001 chr2L_20085001 RAL-304_100b 883 chr2L 20115550 20115594 chr2L 20115665 20115707 10 110 4.5 9.5 7.0 1.2 157 chr2L 20115550 intergenic not near genes chr2L 20115628 intergenic not near genes chr2L 20115707 intergenic not near genes chr2L_10_20115001 chr2L_20115001 RAL-304_100b 884 chr2L 20124304 20124324 chr2L 20124407 20124414 11 101 21.0 10.0 15.5 0.7 110 chr2L 20124304 intergenic not near genes chr2L 20124359 intergenic not near genes chr2L 20124414 intergenic not near genes chr2L_11_20120001 chr2L_20120001 RAL-304_100b 885 chr2L 20124325 20124359 chr2L 20124403 20124462 27 99 11.0 9.0 10.0 2.5 137 chr2L 20124325 intergenic not near genes chr2L 20124394 intergenic not near genes chr2L 20124462 intergenic not near genes chr2L_27_20120001 chr2L_20120001 RAL-304_100b 886 chr2L 20269587 20269633 chr2L 20269832 20269882 39 244 10.5 17.5 14.0 2.6 295 chr2L 20269587 intergenic not near genes chr2L 20269734 intergenic not near genes chr2L 20269882 intergenic not near genes chr2L_39_20265001 chr2L_20265001 RAL-304_100b 887 chr2L 20271236 20271271 chr2L 20271344 20271378 25 102 18.0 18.5 18.2 1.3 142 chr2L 20271236 intergenic not near genes chr2L 20271307 intergenic not near genes chr2L 20271378 intergenic not near genes chr2L_25_20270001 chr2L_20270001 RAL-304_100b 888 chr2L 20272089 20272126 chr2L 20282825 20282862 copia 28 10735 14.5 15.0 14.8 1.8 10773 chr2L 20272089 intergenic not near genes chr2L 20277476 intergenic not near genes chr2L 20282862 intergenic not near genes chr2L_28_20275001 chr2L_20275001 RAL-304_100b 889 chr2L 20272127 20272142 chr2L 20282822 20282857 copia 17 10732 10.0 13.5 11.8 1.3 10730 chr2L 20272127 intergenic not near genes chr2L 20277492 intergenic not near genes chr2L 20282857 intergenic not near genes chr2L_17_20275001 chr2L_20275001 RAL-304_100b 890 chr2L 20296500 20296541 chr2L 20296591 20296645 44 103 2.5 9.5 6.0 6.3 145 chr2L 20296500 intergenic CR43414 - chr2L 20296572 intergenic CR43414 - chr2L 20296645 3` UTR CR43414 - chr2L_44_20295001 chr2L_20295001 RAL-304_100b 891 chr2L 20298797 20298854 chr2L 20298905 20298962 40 104 14.5 9.0 11.8 3.1 165 chr2L 20298797 intergenic not near genes chr2L 20298880 intergenic not near genes chr2L 20298962 intergenic not near genes chr2L_40_20295001 chr2L_20295001 RAL-304_100b 892 chr2L 20299977 20300021 chr2L 20300090 20300114 34 97 20.5 23.5 22.0 1.5 137 chr2L 20299977 intergenic not near genes chr2L 20300046 intergenic not near genes chr2L 20300114 intergenic not near genes chr2L_34_20300001 chr2L_20300001 RAL-304_100b 893 chr2L 20302972 20303004 chr2L 20303086 20303109 11 112 5.0 0.0 2.5 3.1 137 chr2L 20302972 intergenic not near genes chr2L 20303040 intergenic not near genes chr2L 20303109 intergenic not near genes chr2L_11_20300001 chr2L_20300001 RAL-304_100b 894 chr2L 20303164 20303187 chr2L 20310647 20310680 blood 10 7490 2.5 17.0 9.8 0.9 7516 chr2L 20303164 intergenic not near genes chr2L 20306922 intergenic not near genes chr2L 20310680 intergenic not near genes chr2L_10_20305001 chr2L_20305001 RAL-304_100b 895 chr2L 20310873 20310882 chr2L 20310978 20310987 9 104 6.0 20.5 13.2 0.6 114 chr2L 20310873 intergenic spir + chr2L 20310930 intergenic spir + chr2L 20310987 intergenic spir + chr2L_9_20310001 chr2L_20310001 RAL-304_100b 896 chr2L 20310886 20310914 chr2L 20310971 20310980 5 90 2.5 16.5 9.5 0.5 94 chr2L 20310886 intergenic spir + chr2L 20310933 intergenic spir + chr2L 20310980 intergenic spir + chr2L_5_20310001 chr2L_20310001 RAL-304_100b 897 chr2L 20312511 20312567 chr2L 20312621 20312676 8 108 12.5 1.0 6.8 1.0 165 chr2L 20312511 intron spir + chr2L 20312594 intron spir + chr2L 20312676 intron spir + chr2L_8_20310001 chr2L_20310001 RAL-304_100b 898 chr2L 20321508 20321534 chr2L 20321609 20321625 13 99 22.0 24.0 23.0 0.5 117 chr2L 20321508 intron spir + chr2L 20321566 intron spir + chr2L 20321625 intron spir + chr2L_13_20320001 chr2L_20320001 RAL-304_100b 899 chr2L 20372204 20372246 chr2L 20372468 20372512 pogo 27 265 1.5 25.0 13.2 1.9 308 chr2L 20372204 intergenic Ugt37a1 - chr2L 20372358 intergenic Ugt37a1 - chr2L 20372512 exon Ugt37a1 - chr2L_27_20370001 chr2L_20370001 RAL-304_100b 900 chr2L 20383420 20383469 chr2L 20383531 20383586 57 113 12.0 6.0 9.0 5.7 166 chr2L 20383420 intergenic not near genes chr2L 20383503 intergenic not near genes chr2L 20383586 intergenic not near genes chr2L_57_20380001 chr2L_20380001 RAL-304_100b 901 chr2L 20407783 20407798 chr2L 20412925 20412935 flea 6 5143 15.5 7.0 11.2 0.5 5152 chr2L 20407783 intron CG10947 - chr2L 20410359 intron CG10947 - chr2L 20412935 intron CG10947 - chr2L_6_20410001 chr2L_20410001 RAL-304_100b 902 chr2L 20498673 20498692 chr2L 20498797 20498811 20 123 12.5 30.0 21.2 0.9 138 chr2L 20498673 intergenic not near genes chr2L 20498742 intergenic not near genes chr2L 20498811 intergenic not near genes chr2L_20_20495001 chr2L_20495001 RAL-304_100b 903 chr2L 20498693 20498707 chr2L 20498796 20498831 15 121 7.0 29.5 18.2 0.8 138 chr2L 20498693 intergenic not near genes chr2L 20498762 intergenic not near genes chr2L 20498831 intergenic not near genes chr2L_15_20495001 chr2L_20495001 RAL-304_100b 904 chr2L 20524162 20524188 chr2L 20524269 20524293 8 106 17.0 0.0 8.5 0.8 131 chr2L 20524162 intergenic not near genes chr2L 20524228 intergenic not near genes chr2L 20524293 intergenic not near genes chr2L_8_20520001 chr2L_20520001 RAL-304_100b 905 chr2L 20530567 20530628 chr2L 20530679 20530725 46 108 6.5 14.5 10.5 4.0 158 chr2L 20530567 intergenic CG44270 + chr2L 20530646 intergenic CG44270 + chr2L 20530725 intergenic CG44270 + chr2L_46_20530001 chr2L_20530001 RAL-304_100b 906 chr2L 20549363 20549422 chr2L 20550057 20550115 51 690 18.0 23.5 20.8 2.3 752 chr2L 20549363 intergenic not near genes chr2L 20549739 intergenic not near genes chr2L 20550115 intergenic not near genes chr2L_51_20545001 chr2L_20545001 RAL-304_100b 907 chr2L 20568636 20568687 chr2L 20569050 20569103 X-element 37 413 11.0 10.5 10.8 3.1 467 chr2L 20568636 intron CR45347 + chr2L 20568870 intron CR45347 + chr2L 20569103 intron CR45347 + chr2L_37_20565001 chr2L_20565001 RAL-304_100b 908 chr2L 20576196 20576203 chr2L 20583689 20583696 blood 5 7492 22.0 11.5 16.8 0.3 7500 chr2L 20576196 intergenic CR45347 + chr2L 20579946 intergenic not near genes chr2L 20583696 3` UTR CR44909 - chr2L_5_20575001 chr2L_20575001 RAL-304_100b 909 chr2L 20576204 20576250 chr2L 20583687 20583743 blood 46 7486 9.5 10.5 10.0 4.2 7539 chr2L 20576204 intergenic CR45347 + chr2L 20579974 intergenic not near genes chr2L 20583743 3` UTR CR44909 - chr2L_46_20575001 chr2L_20575001 RAL-304_100b 910 chr2L 20597061 20597118 chr2L 20597163 20597217 36 99 15.5 18.5 17.0 2.0 156 chr2L 20597061 intron CR44909 - chr2L 20597139 intron CR44909 - chr2L 20597217 intron CR44909 - chr2L_36_20595001 chr2L_20595001 RAL-304_100b 911 chr2L 20614501 20614559 chr2L 20614608 20614666 42 104 8.5 15.5 12.0 3.2 165 chr2L 20614501 intron CR44909 - chr2L 20614584 intron,5` UTR CR44909 -,CG15475 + chr2L 20614666 intron,5` UTR CR44909 -,CG15475 + chr2L_42_20610001 chr2L_20610001 RAL-304_100b 912 chr2L 20623898 20623907 chr2L 20624002 20624011 4 102 39.5 10.0 24.8 0.2 113 chr2L 20623898 intron CR44909 - chr2L 20623954 intron CR44909 - chr2L 20624011 intron CR44909 - chr2L_4_20620001 chr2L_20620001 RAL-304_100b 913 chr2L 20623913 20623945 chr2L 20624000 20624039 21 93 22.5 10.0 16.2 1.2 126 chr2L 20623913 intron CR44909 - chr2L 20623976 intron CR44909 - chr2L 20624039 intron CR44909 - chr2L_21_20620001 chr2L_20620001 RAL-304_100b 914 chr2L 20644878 20644891 chr2L 20644984 20644997 5 105 29.5 15.5 22.5 0.2 119 chr2L 20644878 exon phr6-4 - chr2L 20644938 exon phr6-4 - chr2L 20644997 exon phr6-4 - chr2L_5_20640001 chr2L_20640001 RAL-304_100b 915 chr2L 20644892 20644930 chr2L 20644982 20645036 37 97 10.0 15.0 12.5 2.7 144 chr2L 20644892 exon phr6-4 - chr2L 20644964 exon phr6-4 - chr2L 20645036 exon phr6-4 - chr2L_37_20640001 chr2L_20640001 RAL-304_100b 916 chr2L 20668662 20668718 chr2L 20668763 20668818 48 99 16.0 23.0 19.5 2.3 156 chr2L 20668662 intron CG31678 - chr2L 20668740 intron CG31678 - chr2L 20668818 intron CG31678 - chr2L_48_20665001 chr2L_20665001 RAL-304_100b 917 chr2L 20674806 20674864 chr2L 20674915 20674967 30 103 8.5 0.0 4.2 5.8 161 chr2L 20674806 intron CG31678 - chr2L 20674886 intron CG31678 - chr2L 20674967 intron CG31678 - chr2L_30_20670001 chr2L_20670001 RAL-304_100b 918 chr2L 20818485 20818541 chr2L 20818591 20818648 30 104 12.5 10.5 11.5 2.4 163 chr2L 20818485 exon CheB38a - chr2L 20818566 intergenic CheB38a - chr2L 20818648 intergenic CheB38a - chr2L_30_20815001 chr2L_20815001 RAL-304_100b 919 chr2L 20835794 20835838 chr2L 20836531 20836580 Quasimodo 29 740 12.0 10.0 11.0 2.4 786 chr2L 20835794 5` UTR Oseg5 - chr2L 20836187 intergenic Oseg5 -,Spn38F - chr2L 20836580 intergenic Spn38F - chr2L_29_20835001 chr2L_20835001 RAL-304_100b 920 chr2L 20891512 20891522 chr2L 20896638 20896648 jockey 7 5125 16.5 9.5 13.0 0.5 5136 chr2L 20891512 intron,intron CG43739 -,sky - chr2L 20894080 intron,intron CG43739 -,sky - chr2L 20896648 intron,intron CG43739 -,sky - chr2L_7_20890001 chr2L_20890001 RAL-304_100b 921 chr2L 20891523 20891546 chr2L 20896637 20896672 jockey 11 5122 5.5 8.5 7.0 1.4 5149 chr2L 20891523 intron,intron CG43739 -,sky - chr2L 20894098 intron,intron CG43739 -,sky - chr2L 20896672 intron,intron CG43739 -,sky - chr2L_11_20890001 chr2L_20890001 RAL-304_100b 922 chr2L 20901430 20901485 chr2L 20902619 20902638 1360 22 1183 14.5 20.0 17.2 1.2 1208 chr2L 20901430 intron,intron CG43739 -,sky - chr2L 20902034 intron,intron CG43739 -,sky - chr2L 20902638 intron,intron CG43739 -,sky - chr2L_22_20900001 chr2L_20900001 RAL-304_100b 923 chr2L 20934578 20934635 chr2L 20934798 20934839 45 218 7.5 6.0 6.8 5.8 261 chr2L 20934578 intergenic CG9270 - chr2L 20934708 intergenic not near genes chr2L 20934839 intergenic not near genes chr2L_45_20930001 chr2L_20930001 RAL-304_100b 924 chr2L 20946922 20946961 chr2L 20947031 20947052 41 107 15.0 17.0 16.0 2.4 130 chr2L 20946922 intergenic CR44606 - chr2L 20946987 intergenic CR44606 - chr2L 20947052 intergenic CR44606 - chr2L_41_20945001 chr2L_20945001 RAL-304_100b 925 chr2L 20976626 20976672 chr2L 20981466 20981502 X-element 40 4835 13.0 14.5 13.8 2.7 4876 chr2L 20976626 intron CG42238 - chr2L 20979064 intron CG42238 - chr2L 20981502 intron CG42238 - chr2L_40_20975001 chr2L_20975001 RAL-304_100b 926 chr2L 21020255 21020266 chr2L 21023954 21023968 NOF 6 3702 29.5 17.5 23.5 0.2 3713 chr2L 21020255 intron CG42238 - chr2L 21022112 intron CG42238 - chr2L 21023968 intron CG42238 - chr2L_6_21020001 chr2L_21020001 RAL-304_100b 927 chr2L 21020269 21020292 chr2L 21023953 21023969 NOF 17 3697 21.0 17.0 19.0 0.8 3700 chr2L 21020269 intron CG42238 - chr2L 21022119 intron CG42238 - chr2L 21023969 intron CG42238 - chr2L_17_21020001 chr2L_21020001 RAL-304_100b 928 chr2L 21020294 21020305 chr2L 21023952 21024007 NOF 8 3687 15.5 16.5 16.0 0.5 3713 chr2L 21020294 intron CG42238 - chr2L 21022150 intron CG42238 - chr2L 21024007 intron CG42238 - chr2L_8_21020001 chr2L_21020001 RAL-304_100b 929 chr2L 21041114 21041150 chr2L 21049399 21049436 Tirant 28 8284 16.5 13.5 15.0 1.8 8322 chr2L 21041114 intron CG42238 - chr2L 21045275 intron CG42238 - chr2L 21049436 intron CG42238 - chr2L_28_21045001 chr2L_21045001 RAL-304_100b 930 chr2L 21041154 21041167 chr2L 21049395 21049443 Tirant 14 8276 9.5 12.0 10.8 1.2 8289 chr2L 21041154 intron CG42238 - chr2L 21045298 intron CG42238 - chr2L 21049443 intron CG42238 - chr2L_14_21045001 chr2L_21045001 RAL-304_100b 931 chr2L 21110630 21110683 chr2L 21110740 21110793 26 109 10.5 5.0 7.8 3.0 163 chr2L 21110630 intron Nhe2 + chr2L 21110712 intron Nhe2 + chr2L 21110793 intron Nhe2 + chr2L_26_21110001 chr2L_21110001 RAL-304_100b 932 chr2L 21286582 21286624 chr2L 21286685 21286722 23 100 15.0 9.0 12.0 1.8 140 chr2L 21286582 exon Mio - chr2L 21286652 intron Mio - chr2L 21286722 intron Mio - chr2L_23_21285001 chr2L_21285001 RAL-304_100b 933 chr2L 21347543 21347583 chr2L 21355020 21355081 blood 15 7496 9.5 3.0 6.2 2.1 7538 chr2L 21347543 intron Tsp39D + chr2L 21351312 intron Tsp39D + chr2L 21355081 intron Tsp39D + chr2L_15_21350001 chr2L_21350001 RAL-304_100b 934 chr2L 21368518 21368572 chr2L 21368620 21368671 17 97 12.0 8.0 10.0 1.5 153 chr2L 21368518 intron Gr39b - chr2L 21368594 intron Gr39b - chr2L 21368671 intron Gr39b - chr2L_17_21365001 chr2L_21365001 RAL-304_100b 935 chr2L 21584880 21584934 chr2L 21584996 21585050 43 107 12.0 15.0 13.5 3.0 170 chr2L 21584880 intron nompB - chr2L 21584965 intron nompB - chr2L 21585050 intron nompB - chr2L_43_21580001 chr2L_21580001 RAL-304_100b 936 chr2L 21597026 21597047 chr2L 21604783 21604816 roo 16 7765 1.5 15.5 8.5 1.7 7790 chr2L 21597026 intergenic not near genes chr2L 21600921 intergenic not near genes chr2L 21604816 intergenic not near genes chr2L_16_21600001 chr2L_21600001 RAL-304_100b 937 chr2L 21597049 21597058 chr2L 21604779 21604827 roo 9 7762 1.5 14.5 8.0 1.0 7778 chr2L 21597049 intergenic not near genes chr2L 21600938 intergenic not near genes chr2L 21604827 intergenic not near genes chr2L_9_21600001 chr2L_21600001 RAL-304_100b 938 chr2L 21653168 21653223 chr2L 21656497 21656552 invader4 32 3327 10.5 4.5 7.5 3.8 3384 chr2L 21653168 intergenic not near genes chr2L 21654860 intergenic not near genes chr2L 21656552 intergenic not near genes chr2L_32_21650001 chr2L_21650001 RAL-304_100b 939 chr2L 21691802 21691817 chr2L 21698297 21698312 Burdock 6 6495 13.0 2.0 7.5 0.7 6510 chr2L 21691802 intron CG31619 + chr2L 21695057 intron CG31619 + chr2L 21698312 intron CG31619 + chr2L_6_21695001 chr2L_21695001 RAL-304_100b 940 chr2L 21691821 21691855 chr2L 21698295 21698327 Burdock 13 6486 7.5 2.0 4.8 2.2 6506 chr2L 21691821 intron CG31619 + chr2L 21695074 intron CG31619 + chr2L 21698327 intron CG31619 + chr2L_13_21695001 chr2L_21695001 RAL-304_100b 941 chr2L 21754642 21754691 chr2L 21754748 21754786 19 105 7.0 13.0 10.0 1.7 144 chr2L 21754642 intron step - chr2L 21754714 intron step - chr2L 21754786 intron step - chr2L_19_21750001 chr2L_21750001 RAL-304_100b 942 chr2L 21755470 21755522 chr2L 21755619 21755660 34 145 12.0 10.5 11.2 2.8 190 chr2L 21755470 intron step - chr2L 21755565 intron step - chr2L 21755660 intron step - chr2L_34_21755001 chr2L_21755001 RAL-304_100b 943 chr2L 21757550 21757564 chr2L 21757657 21757670 8 106 26.0 12.0 19.0 0.4 120 chr2L 21757550 intergenic step -,CG1416 + chr2L 21757610 intergenic step -,CG1416 + chr2L 21757670 intergenic step -,CG1416 + chr2L_8_21755001 chr2L_21755001 RAL-304_100b 944 chr2L 21757565 21757599 chr2L 21757656 21757705 18 105 12.0 11.5 11.8 1.4 140 chr2L 21757565 intergenic step -,CG1416 + chr2L 21757635 intergenic step -,CG1416 + chr2L 21757705 intergenic step -,CG1416 + chr2L_18_21755001 chr2L_21755001 RAL-304_100b 945 chr2L 21836368 21836373 chr2L 21836483 21836488 4 115 68.5 15.0 41.8 0.1 120 chr2L 21836368 3` UTR tsh + chr2L 21836428 3` UTR tsh + chr2L 21836488 3` UTR tsh + chr2L_4_21835001 chr2L_21835001 RAL-304_100b 946 chr2L 21836380 21836424 chr2L 21836480 21836522 42 108 15.0 13.5 14.2 2.8 142 chr2L 21836380 3` UTR tsh + chr2L 21836451 3` UTR tsh + chr2L 21836522 3` UTR tsh + chr2L_42_21835001 chr2L_21835001 RAL-304_100b 947 chr2L 21855452 21855511 chr2L 21855563 21855609 38 108 8.5 10.5 9.5 3.6 157 chr2L 21855452 intron CR44917 + chr2L 21855530 intron CR44917 + chr2L 21855609 intron CR44917 + chr2L_38_21855001 chr2L_21855001 RAL-304_100b 948 chr2L 21859293 21859306 chr2L 21859398 21859411 14 104 49.0 19.0 34.0 0.4 118 chr2L 21859293 intron CR44917 + chr2L 21859352 intron CR44917 + chr2L 21859411 intron CR44917 + chr2L_14_21855001 chr2L_21855001 RAL-304_100b 949 chr2L 21859307 21859352 chr2L 21859397 21859452 66 100 18.5 20.0 19.2 3.3 145 chr2L 21859307 intron CR44917 + chr2L 21859380 intron CR44917 + chr2L 21859452 intron CR44917 + chr2L_66_21855001 chr2L_21855001 RAL-304_100b 950 chr2L 21933896 21933927 chr2L 21934002 21934002 12 100 34.5 34.5 34.5 0.3 106 chr2L 21933896 intergenic not near genes chr2L 21933949 intergenic not near genes chr2L 21934002 intergenic not near genes chr2L_12_21930001 chr2L_21930001 RAL-304_100b 951 chr2L 21934546 21934555 chr2L 21934694 21934698 4 146 40.5 20.5 30.5 0.1 152 chr2L 21934546 intergenic not near genes chr2L 21934622 intergenic not near genes chr2L 21934698 intergenic not near genes chr2L_4_21930001 chr2L_21930001 RAL-304_100b 952 chr2L 21934556 21934599 chr2L 21934693 21934736 38 142 15.0 20.0 17.5 2.1 180 chr2L 21934556 intergenic not near genes chr2L 21934646 intergenic not near genes chr2L 21934736 intergenic not near genes chr2L_38_21930001 chr2L_21930001 RAL-304_100b 953 chr2L 21953796 21953809 chr2L 21954672 21954685 5 877 76.0 98.5 87.2 0.1 889 chr2L 21953796 intergenic not near genes chr2L 21954240 intergenic not near genes chr2L 21954685 intergenic not near genes chr2L_5_21950001 chr2L_21950001 RAL-304_100b 954 chr2L 21953795 21953828 chr2L 21954691 21954704 18 885 80.0 100.0 90.0 0.2 909 chr2L 21953795 intergenic not near genes chr2L 21954250 intergenic not near genes chr2L 21954704 intergenic not near genes chr2L_18_21950001 chr2L_21950001 RAL-304_100b 955 chr2L 21953793 21953846 chr2L 21954705 21954722 9 886 81.5 97.5 89.5 0.1 929 chr2L 21953793 intergenic not near genes chr2L 21954258 intergenic not near genes chr2L 21954722 intergenic not near genes chr2L_9_21950001 chr2L_21950001 RAL-304_100b 956 chr2L 21981664 21981682 chr2L 21990850 21990872 roo 13 9189 24.5 20.0 22.2 0.6 9208 chr2L 21981664 exon CG2528 - chr2L 21986268 intron CG2528 - chr2L 21990872 exon CG2528 - chr2L_13_21985001 chr2L_21985001 RAL-304_100b 957 chr2L 21981683 21981713 chr2L 21990848 21990888 roo 25 9181 13.5 18.5 16.0 1.5 9205 chr2L 21981683 exon CG2528 - chr2L 21986286 intron CG2528 - chr2L 21990888 exon CG2528 - chr2L_25_21985001 chr2L_21985001 RAL-304_100b 958 chr2L 21994596 21994649 chr2L 21994697 21994750 35 98 9.0 6.0 7.5 4.1 154 chr2L 21994596 intergenic not near genes chr2L 21994673 intergenic not near genes chr2L 21994750 intergenic not near genes chr2L_35_21990001 chr2L_21990001 RAL-304_100b 959 chr2L 22047228 22047256 chr2L 22047378 22047406 19 147 14.0 16.0 15.0 1.2 178 chr2L 22047228 intergenic not near genes chr2L 22047317 intergenic not near genes chr2L 22047406 intergenic not near genes chr2L_19_22045001 chr2L_22045001 RAL-304_100b 960 chr2L 22165692 22165743 chr2L 22165799 22165845 18 107 5.5 5.5 5.5 2.8 153 chr2L 22165692 3` UTR CG42748 + chr2L 22165768 3` UTR,3` UTR CG42748 +,Clamp - chr2L 22165845 3` UTR,3` UTR CG42748 +,Clamp - chr2L_18_22165001 chr2L_22165001 RAL-304_100b 961 chr2L 22178029 22178041 chr2L 22178133 22178139 8 103 22.5 14.0 18.2 0.4 110 chr2L 22178029 intron CG3635 + chr2L 22178084 intron CG3635 + chr2L 22178139 intron CG3635 + chr2L_8_22175001 chr2L_22175001 RAL-304_100b 962 chr2L 22178043 22178071 chr2L 22178127 22178175 18 102 5.5 12.0 8.8 1.8 132 chr2L 22178043 intron CG3635 + chr2L 22178109 intron CG3635 + chr2L 22178175 intron CG3635 + chr2L_18_22175001 chr2L_22175001 RAL-304_100b 963 chr2L 22187418 22187443 chr2L 22187553 22187578 15 134 12.0 4.0 8.0 1.7 160 chr2L 22187418 intergenic not near genes chr2L 22187498 intergenic not near genes chr2L 22187578 intergenic not near genes chr2L_15_22185001 chr2L_22185001 RAL-304_100b 964 chr2L 22192002 22192004 chr2L 22192116 22192118 5 114 37.0 15.0 26.0 0.2 116 chr2L 22192002 intron Ir40a - chr2L 22192060 intron Ir40a - chr2L 22192118 intron Ir40a - chr2L_5_22190001 chr2L_22190001 RAL-304_100b 965 chr2L 22192005 22192058 chr2L 22192113 22192160 39 110 9.5 13.5 11.5 3.1 155 chr2L 22192005 intron Ir40a - chr2L 22192082 intron Ir40a - chr2L 22192160 intron Ir40a - chr2L_39_22190001 chr2L_22190001 RAL-304_100b 966 chr2L 22198989 22199049 chr2L 22199104 22199164 52 111 9.0 9.5 9.2 5.1 175 chr2L 22198989 intron Ir40a - chr2L 22199076 intron Ir40a - chr2L 22199164 intron Ir40a - chr2L_52_22195001 chr2L_22195001 RAL-304_100b 967 chr2L 22212113 22212163 chr2L 22212685 22212735 21 570 4.5 6.0 5.2 3.4 622 chr2L 22212113 intron Ir40a - chr2L 22212424 intron Ir40a - chr2L 22212735 exon Ir40a - chr2L_21_22210001 chr2L_22210001 RAL-304_100b 968 chr2L 22214509 22214545 chr2L 22214626 22214655 20 114 8.5 13.5 11.0 1.7 146 chr2L 22214509 intergenic Ir40a - chr2L 22214582 intergenic Ir40a - chr2L 22214655 intergenic Ir40a - chr2L_20_22210001 chr2L_22210001 RAL-304_100b 969 chr2L 22258587 22258593 chr2L 22260737 22260743 G6 8 2150 27.5 13.5 20.5 0.4 2156 chr2L 22258587 intergenic Tif-IA + chr2L 22259665 intergenic not near genes chr2L 22260743 intergenic not near genes chr2L_8_22255001 chr2L_22255001 RAL-304_100b 970 chr2L 22258596 22258635 chr2L 22260735 22260785 G6 21 2145 8.5 12.5 10.5 1.8 2189 chr2L 22258596 intergenic Tif-IA + chr2L 22259690 intergenic not near genes chr2L 22260785 intergenic not near genes chr2L_21_22255001 chr2L_22255001 RAL-304_100b 971 chr2L 9723025 9723026 chr2L 22522654 22522655 4 12799629 52.5 46.0 49.2 0.1 12799630 chr2L 9723025 intron Nckx30C - chr2L 16122840 intergenic not near genes chr2L 22522655 intergenic not near genes chr2L_4_16120001 chr2L_16120001 RAL-304_100b 972 chr2L 22545955 22546011 chr2L 22546076 22546132 53 115 11.0 18.5 14.8 3.4 177 chr2L 22545955 intron CG17490 + chr2L 22546044 intron CG17490 + chr2L 22546132 intron CG17490 + chr2L_53_22545001 chr2L_22545001 RAL-304_100b 973 chr2L 22548922 22548923 chr2L 22550171 22550173 1360 5 1250 1.5 21.0 11.2 0.4 1251 chr2L 22548922 intergenic CG17490 + chr2L 22549548 intergenic not near genes chr2L 22550173 intergenic CG17493 + chr2L_5_22545001 chr2L_22545001 RAL-304_100b 974 chr2L 22548924 22548929 chr2L 22550169 22550179 1360 5 1249 0.0 21.0 10.5 0.4 1255 chr2L 22548924 intergenic CG17490 + chr2L 22549552 intergenic not near genes chr2L 22550179 intergenic CG17493 + chr2L_5_22545001 chr2L_22545001 RAL-304_100b 975 chr2L 22548931 22548940 chr2L 22550146 22550190 1360 13 1241 0.0 13.5 6.8 1.7 1259 chr2L 22548931 intergenic CG17490 + chr2L 22549560 intergenic not near genes chr2L 22550190 intergenic CG17493 + chr2L_13_22545001 chr2L_22545001 RAL-304_100b 976 chr2L 22581950 22581989 chr2L 22583764 22583798 S-element 21 1811 12.5 10.0 11.2 1.7 1848 chr2L 22581950 intron CG17494 + chr2L 22582874 intron CG17494 + chr2L 22583798 intron CG17494 + chr2L_21_22580001 chr2L_22580001 RAL-304_100b 977 chr2L 22676105 22676155 chr2L 22676368 22676416 21 263 9.0 3.5 6.2 2.9 311 chr2L 22676105 intron CG40006 - chr2L 22676260 intron CG40006 - chr2L 22676416 intron CG40006 - chr2L_21_22675001 chr2L_22675001 RAL-304_100b 978 chr2L 22679800 22679822 chr2L 22684582 22684605 F-element 25 4793 11.0 22.0 16.5 1.4 4805 chr2L 22679800 intron CG40006 - chr2L 22682202 intron CG40006 - chr2L 22684605 intron CG40006 - chr2L_25_22680001 chr2L_22680001 RAL-304_100b 979 chr2L 22693898 22693913 chr2L 22694010 22694025 7 111 2.0 14.0 8.0 0.8 127 chr2L 22693898 intron CG40006 - chr2L 22693962 intron CG40006 - chr2L 22694025 intron CG40006 - chr2L_7_22690001 chr2L_22690001 RAL-304_100b 980 chr2L 22693916 22693951 chr2L 22694008 22694063 35 108 1.5 14.0 7.8 4.0 147 chr2L 22693916 intron CG40006 - chr2L 22693990 intron CG40006 - chr2L 22694063 intron CG40006 - chr2L_35_22690001 chr2L_22690001 RAL-304_100b 981 chr2L 22724028 22724042 chr2L 22724128 22724133 7 105 6.0 0.5 3.2 1.7 105 chr2L 22724028 intron CG40006 - chr2L 22724080 intron CG40006 - chr2L 22724133 intron CG40006 - chr2L_7_22720001 chr2L_22720001 RAL-304_100b 982 chr2L 22774886 22774891 chr2L 22774996 22775004 4 112 21.5 40.5 31.0 0.1 118 chr2L 22774886 intergenic not near genes chr2L 22774945 intergenic not near genes chr2L 22775004 intergenic not near genes chr2L_4_22770001 chr2L_22770001 RAL-304_100b 983 chr2L 22776399 22776407 chr2L 22778213 22778221 S-element 7 1814 15.0 7.5 11.2 0.6 1822 chr2L 22776399 intergenic not near genes chr2L 22777310 intergenic not near genes chr2L 22778221 intergenic not near genes chr2L_7_22775001 chr2L_22775001 RAL-304_100b 984 chr2L 22776408 22776451 chr2L 22778212 22778265 S-element 20 1812 4.0 7.5 5.8 2.9 1857 chr2L 22776408 intergenic not near genes chr2L 22777336 intergenic not near genes chr2L 22778265 intergenic not near genes chr2L_20_22775001 chr2L_22775001 RAL-304_100b 985 chr2L 22983915 22983973 chr2L 22984016 22984051 33 97 12.5 12.0 12.2 2.5 136 chr2L 22983915 intron cta + chr2L 22983983 intron cta + chr2L 22984051 intron cta + chr2L_33_22980001 chr2L_22980001 RAL-304_100b 986 chr2L 23168867 23168889 chr2L 23168936 23168969 19 96 19.5 28.0 23.8 0.8 102 chr2L 23168867 intron,5` UTR CG12567 -,mir-2490 + chr2L 23168918 intron CG12567 - chr2L 23168969 intron CG12567 - chr2L_19_23165001 chr2L_23165001 RAL-304_100b 987 chr2L 23241838 23241870 chr2L 23241925 23241930 6 77 19.0 13.5 16.2 0.3 92 chr2L 23241838 intergenic not near genes chr2L 23241884 intergenic not near genes chr2L 23241930 intergenic not near genes chr2L_6_23240001 chr2L_23240001 RAL-304_100b 988 chr2R 330659 330677 chr2R 331998 332012 5 1338 10.5 14.0 12.2 0.4 1353 chr2R 330659 intergenic not near genes chr2R 331336 intergenic not near genes chr2R 332012 intergenic not near genes chr2R_5_330001 chr2R_330001 RAL-304_100b 989 chr2R 469923 469933 chr2R 4141916 4141922 4 3671990 1.0 65.0 33.0 0.1 3671999 chr2R 469923 intergenic not near genes chr2R 2305922 intergenic not near genes chr2R 4141922 intergenic not near genes chr2R_4_2305001 chr2R_2305001 RAL-304_100b 990 chr2R 529317 529319 chr2R 537952 537969 Max-element 4 8645 31.5 25.5 28.5 0.1 8652 chr2R 529317 intron CG40378 + chr2R 533643 intron CG40378 + chr2R 537969 intron CG40378 + chr2R_4_530001 chr2R_530001 RAL-304_100b 991 chr2R 529320 529355 chr2R 537946 537954 Max-element 33 8642 16.5 22.0 19.2 1.6 8634 chr2R 529320 intron CG40378 + chr2R 533637 intron CG40378 + chr2R 537954 intron CG40378 + chr2R_33_530001 chr2R_530001 RAL-304_100b 992 chr2R 552728 552785 chr2R 553971 554002 1360 29 1224 10.0 12.0 11.0 2.4 1274 chr2R 552728 intron CG40378 + chr2R 553365 intron CG40378 + chr2R 554002 intron CG40378 + chr2R_29_550001 chr2R_550001 RAL-304_100b 993 chr2R 552786 552787 chr2R 553969 554000 1360 7 1208 9.5 11.0 10.2 0.6 1214 chr2R 552786 intron CG40378 + chr2R 553393 intron CG40378 + chr2R 554000 intron CG40378 + chr2R_7_550001 chr2R_550001 RAL-304_100b 994 chr2R 1072744 1072794 chr2R 1075064 1075114 Cr1a 21 2320 65.0 20.0 42.5 0.5 2370 chr2R 1072744 intron rl + chr2R 1073929 intron rl + chr2R 1075114 intron rl + chr2R_21_1070001 chr2R_1070001 RAL-304_100b 995 chr2R 1082371 1082383 chr2R 1087131 1087139 Doc 13 4780 23.5 22.0 22.8 0.5 4768 chr2R 1082371 intron rl + chr2R 1084755 intron rl + chr2R 1087139 intron rl + chr2R_13_1080001 chr2R_1080001 RAL-304_100b 996 chr2R 1320204 1320204 chr2R 21358403 21358403 6 20038199 64.0 35.5 49.8 0.1 20038199 chr2R 1320204 intergenic not near genes chr2R 11339304 exon zetaTry - chr2R 21358403 intron cv-2 - chr2R_6_11335001 chr2R_11335001 RAL-304_100b 997 chr2R 1516581 1516603 chr2R 1521334 1521356 1731 27 4752 48.5 27.5 38.0 0.7 4775 chr2R 1516581 exon Maf1 - chr2R 1518968 intron Maf1 - chr2R 1521356 5` UTR Maf1 - chr2R_27_1515001 chr2R_1515001 RAL-304_100b 998 chr2R 1880679 1880695 chr2R 5639655 5639655 5 3758969 88.5 55.5 72.0 0.1 3758976 chr2R 1880679 intron CG17684 - chr2R 3760167 intergenic not near genes chr2R 5639655 intergenic not near genes chr2R_5_3760001 chr2R_3760001 RAL-304_100b 999 chr2R 2015117 2015163 chr2R 2015209 2015265 24 96 8.0 5.0 6.5 3.2 148 chr2R 2015117 intron CG17684 - chr2R 2015191 intron CG17684 - chr2R 2015265 intron CG17684 - chr2R_24_2015001 chr2R_2015001 RAL-304_100b 1000 chr2R 2110482 2110494 chr2R 2118065 2118077 17.6 8 7582 25.5 6.0 15.8 0.5 7595 chr2R 2110482 intron CG17684 - chr2R 2114280 intron CG17684 - chr2R 2118077 intron CG17684 - chr2R_8_2110001 chr2R_2110001 RAL-304_100b 1001 chr2R 2498961 2498979 chr2R 2508133 2508151 roo 14 9171 20.0 11.0 15.5 0.8 9190 chr2R 2498961 intron MFS17 - chr2R 2503556 intron MFS17 - chr2R 2508151 intron MFS17 - chr2R_14_2500001 chr2R_2500001 RAL-304_100b 1002 chr2R 2498984 2499014 chr2R 2508129 2508186 roo 26 9167 9.0 11.0 10.0 2.4 9202 chr2R 2498984 intron MFS17 - chr2R 2503585 intron MFS17 - chr2R 2508186 intron MFS17 - chr2R_26_2500001 chr2R_2500001 RAL-304_100b 1003 chr2R 2508282 2508340 chr2R 2508445 2508481 42 158 7.0 9.5 8.2 4.6 199 chr2R 2508282 intron MFS17 - chr2R 2508382 intron MFS17 - chr2R 2508481 intron MFS17 - chr2R_42_2505001 chr2R_2505001 RAL-304_100b 1004 chr2R 1373051 1373069 chr2R 2589324 2589342 Cr1a 5 1216274 34.5 32.0 33.2 0.1 1216291 chr2R 1373051 intron l(2)41Ab + chr2R 1981196 intron CG17684 - chr2R 2589342 intergenic not near genes chr2R_5_1980001 chr2R_1980001 RAL-304_100b 1005 chr2R 2875386 2875394 chr2R 2878927 2878935 HMS-Beagle 5 3540 39.5 53.5 46.5 0.1 3549 chr2R 2875386 intergenic not near genes chr2R 2877160 intergenic not near genes chr2R 2878935 intergenic not near genes chr2R_5_2875001 chr2R_2875001 RAL-304_100b 1006 chr2R 3130204 3130214 chr2R 3130316 3130326 9 112 27.5 7.5 17.5 0.5 122 chr2R 3130204 intron CG42596 + chr2R 3130265 intron CG42596 + chr2R 3130326 intron CG42596 + chr2R_9_3130001 chr2R_3130001 RAL-304_100b 1007 chr2R 3130215 3130256 chr2R 3130312 3130368 36 109 14.5 6.5 10.5 3.1 153 chr2R 3130215 intron CG42596 + chr2R 3130292 intron CG42596 + chr2R 3130368 intron CG42596 + chr2R_36_3130001 chr2R_3130001 RAL-304_100b 1008 chr2R 3144060 3144110 chr2R 3393363 3393413 Doc 16 249301 56.0 61.0 58.5 0.3 249353 chr2R 3144060 intron CG42596 + chr2R 3268736 intergenic not near genes chr2R 3393413 intergenic not near genes chr2R_16_3265001 chr2R_3265001 RAL-304_100b 1009 chr2R 3291793 3291955 chr2R 3914992 3915135 13 623193 57.5 66.0 61.8 0.2 623342 chr2R 3291793 intergenic not near genes chr2R 3603464 intergenic not near genes chr2R 3915135 intron uex - chr2R_13_3600001 chr2R_3600001 RAL-304_100b 1010 chr2R 3293717 3293761 chr2R 3293820 3293854 16 100 12.0 9.0 10.5 1.4 137 chr2R 3293717 intergenic not near genes chr2R 3293786 intergenic not near genes chr2R 3293854 intergenic not near genes chr2R_16_3290001 chr2R_3290001 RAL-304_100b 1011 chr2R 3526623 3526634 chr2R 3531378 3531389 F-element 4 4755 8.5 7.0 7.8 0.5 4766 chr2R 3526623 intergenic not near genes chr2R 3529006 intergenic not near genes chr2R 3531389 intergenic not near genes chr2R_4_3525001 chr2R_3525001 RAL-304_100b 1012 chr2R 3532594 3532633 chr2R 3536062 3536101 Doc 13 3467 6.0 6.0 6.0 1.9 3507 chr2R 3532594 intergenic not near genes chr2R 3534348 intergenic not near genes chr2R 3536101 intergenic not near genes chr2R_13_3530001 chr2R_3530001 RAL-304_100b 1013 chr2R 3583035 3583088 chr2R 3583136 3583189 12 101 5.0 5.0 5.0 2.0 154 chr2R 3583035 intergenic not near genes chr2R 3583112 intergenic not near genes chr2R 3583189 intergenic not near genes chr2R_12_3580001 chr2R_3580001 RAL-304_100b 1014 chr2R 4015297 4015349 chr2R 4015489 4015547 32 197 8.0 5.5 6.8 4.1 250 chr2R 4015297 intron Haspin + chr2R 4015422 intron Haspin + chr2R 4015547 intron Haspin + chr2R_32_4015001 chr2R_4015001 RAL-304_100b 1015 chr2R 473352 473369 chr2R 4150692 4150708 7 3677339 0.0 42.0 21.0 0.3 3677356 chr2R 473352 intergenic not near genes chr2R 2312030 intergenic not near genes chr2R 4150708 intergenic not near genes chr2R_7_2310001 chr2R_2310001 RAL-304_100b 1016 chr2R 4247801 4247837 chr2R 4247911 4247911 7 86 11.5 18.0 14.8 0.4 110 chr2R 4247801 intergenic not near genes chr2R 4247856 intergenic not near genes chr2R 4247911 intergenic not near genes chr2R_7_4245001 chr2R_4245001 RAL-304_100b 1017 chr2R 4387295 4387305 chr2R 4387471 4387474 11 174 13.5 0.0 6.8 1.4 179 chr2R 4387295 intron Gprk1 - chr2R 4387384 intron Gprk1 - chr2R 4387474 intron Gprk1 - chr2R_11_4385001 chr2R_4385001 RAL-304_100b 1018 chr2R 4387308 4387312 chr2R 4387440 4387456 5 159 12.0 0.0 6.0 0.7 148 chr2R 4387308 intron Gprk1 - chr2R 4387382 intron Gprk1 - chr2R 4387456 intron Gprk1 - chr2R_5_4385001 chr2R_4385001 RAL-304_100b 1019 chr2R 4604528 4604551 chr2R 4604632 4604655 14 96 29.5 13.0 21.2 0.6 127 chr2R 4604528 intron p120ctn + chr2R 4604592 intron p120ctn + chr2R 4604655 intron p120ctn + chr2R_14_4600001 chr2R_4600001 RAL-304_100b 1020 chr2R 4604552 4604583 chr2R 4604628 4604689 17 92 17.0 12.5 14.8 1.1 137 chr2R 4604552 intron p120ctn + chr2R 4604620 intron p120ctn + chr2R 4604689 intron p120ctn + chr2R_17_4600001 chr2R_4600001 RAL-304_100b 1021 chr2R 4621292 4621346 chr2R 4621857 4621911 40 562 13.5 13.0 13.2 2.8 619 chr2R 4621292 3` UTR CR44101 - chr2R 4621602 3` UTR CR44101 - chr2R 4621911 3` UTR CR44101 - chr2R_40_4620001 chr2R_4620001 RAL-304_100b 1022 chr2R 4622935 4622941 chr2R 4624114 4624125 1360 4 1182 41.0 15.5 28.2 0.1 1190 chr2R 4622935 intergenic CR44101 - chr2R 4623530 intergenic not near genes chr2R 4624125 intergenic not near genes chr2R_4_4620001 chr2R_4620001 RAL-304_100b 1023 chr2R 4622944 4622949 chr2R 4624112 4624133 1360 11 1177 36.5 14.0 25.2 0.4 1189 chr2R 4622944 intergenic CR44101 - chr2R 4623538 intergenic not near genes chr2R 4624133 intergenic not near genes chr2R_11_4620001 chr2R_4620001 RAL-304_100b 1024 chr2R 4622951 4622975 chr2R 4624110 4624144 1360 18 1171 22.5 13.0 17.8 1.0 1193 chr2R 4622951 intergenic CR44101 - chr2R 4623548 intergenic not near genes chr2R 4624144 intergenic not near genes chr2R_18_4620001 chr2R_4620001 RAL-304_100b 1025 chr2R 4622976 4622985 chr2R 4624109 4624149 1360 11 1163 17.0 12.0 14.5 0.7 1173 chr2R 4622976 intergenic CR44101 - chr2R 4623562 intergenic not near genes chr2R 4624149 intergenic not near genes chr2R_11_4620001 chr2R_4620001 RAL-304_100b 1026 chr2R 4624626 4624641 chr2R 4626549 4626556 Bica 15 1928 32.0 14.5 23.2 0.6 1930 chr2R 4624626 intergenic not near genes chr2R 4625591 intergenic not near genes chr2R 4626556 intergenic not near genes chr2R_15_4625001 chr2R_4625001 RAL-304_100b 1027 chr2R 4624642 4624663 chr2R 4626548 4626593 Bica 18 1926 20.5 13.5 17.0 1.0 1951 chr2R 4624642 intergenic not near genes chr2R 4625618 intergenic not near genes chr2R 4626593 intergenic not near genes chr2R_18_4625001 chr2R_4625001 RAL-304_100b 1028 chr2R 4624665 4624671 chr2R 4626544 4626601 Bica 6 1922 16.0 13.0 14.5 0.4 1936 chr2R 4624665 intergenic not near genes chr2R 4625633 intergenic not near genes chr2R 4626601 intergenic not near genes chr2R_6_4625001 chr2R_4625001 RAL-304_100b 1029 chr2R 4656690 4656746 chr2R 4656816 4656856 67 121 94.5 110.0 102.2 0.6 166 chr2R 4656690 intergenic not near genes chr2R 4656773 intergenic not near genes chr2R 4656856 intergenic not near genes chr2R_67_4655001 chr2R_4655001 RAL-304_100b 1030 chr2R 4688101 4688127 chr2R 4688209 4688245 23 115 8.5 13.0 10.8 1.9 144 chr2R 4688101 intergenic not near genes chr2R 4688173 intergenic not near genes chr2R 4688245 intergenic not near genes chr2R_23_4685001 chr2R_4685001 RAL-304_100b 1031 chr2R 4751714 4751716 chr2R 4751817 4751834 5 113 12.0 15.0 13.5 0.3 120 chr2R 4751714 intron conu + chr2R 4751774 intron conu + chr2R 4751834 intron conu + chr2R_5_4750001 chr2R_4750001 RAL-304_100b 1032 chr2R 4751718 4751728 chr2R 4751806 4751832 7 111 8.5 12.5 10.5 0.6 114 chr2R 4751718 intron conu + chr2R 4751775 intron conu + chr2R 4751832 intron conu + chr2R_7_4750001 chr2R_4750001 RAL-304_100b 1033 chr2R 4783314 4783453 chr2R 4783423 4783529 89 103 9.5 1.0 5.2 14.4 215 chr2R 4783314 intergenic not near genes chr2R 4783422 intergenic not near genes chr2R 4783529 intergenic not near genes chr2R_89_4780001 chr2R_4780001 RAL-304_100b 1034 chr2R 4825123 4825123 chr2R 22311214 22311217 4 17486092 60.0 31.0 45.5 0.1 17486094 chr2R 4825123 intergenic not near genes chr2R 13568170 intergenic not near genes chr2R 22311217 intron wdp - chr2R_4_13565001 chr2R_13565001 RAL-304_100b 1035 chr2R 4838848 4838860 chr2R 4840396 4840408 transib2 7 1548 29.5 13.0 21.2 0.3 1560 chr2R 4838848 intergenic not near genes chr2R 4839628 intergenic not near genes chr2R 4840408 intergenic not near genes chr2R_7_4835001 chr2R_4835001 RAL-304_100b 1036 chr2R 4838861 4838903 chr2R 4840394 4840451 transib2 23 1545 11.5 11.0 11.2 1.9 1590 chr2R 4838861 intergenic not near genes chr2R 4839656 intergenic not near genes chr2R 4840451 intergenic not near genes chr2R_23_4835001 chr2R_4835001 RAL-304_100b 1037 chr2R 4870720 4870726 chr2R 4871256 4871262 R1A1-element 5 536 25.5 19.0 22.2 0.2 542 chr2R 4870720 intergenic not near genes chr2R 4870991 intergenic not near genes chr2R 4871262 intergenic not near genes chr2R_5_4870001 chr2R_4870001 RAL-304_100b 1038 chr2R 4870729 4870743 chr2R 4871254 4871279 R1A1-element 10 533 18.0 17.0 17.5 0.5 550 chr2R 4870729 intergenic not near genes chr2R 4871004 intergenic not near genes chr2R 4871279 intergenic not near genes chr2R_10_4870001 chr2R_4870001 RAL-304_100b 1039 chr2R 4887594 4887647 chr2R 4887815 4887868 22 221 6.0 8.5 7.2 2.7 274 chr2R 4887594 intergenic not near genes chr2R 4887731 intergenic not near genes chr2R 4887868 intergenic not near genes chr2R_22_4885001 chr2R_4885001 RAL-304_100b 1040 chr2R 4899548 4899587 chr2R 4900052 4900054 6 495 13.5 0.0 6.8 0.8 506 chr2R 4899548 intron CG44102 - chr2R 4899801 intron CG44102 - chr2R 4900054 intron CG44102 - chr2R_6_4895001 chr2R_4895001 RAL-304_100b 1041 chr2R 4916072 4916123 chr2R 4916175 4916226 34 100 64.5 72.5 68.5 0.5 154 chr2R 4916072 intergenic not near genes chr2R 4916149 intergenic not near genes chr2R 4916226 intergenic not near genes chr2R_34_4915001 chr2R_4915001 RAL-304_100b 1042 chr2R 4924450 4924458 chr2R 4924606 4924614 6 156 25.5 3.5 14.5 0.4 164 chr2R 4924450 intron Ir41a + chr2R 4924532 intron Ir41a + chr2R 4924614 intron Ir41a + chr2R_6_4920001 chr2R_4920001 RAL-304_100b 1043 chr2R 4940934 4940987 chr2R 4943409 4943426 37 2470 12.5 21.0 16.8 2.1 2492 chr2R 4940934 intron Ir41a + chr2R 4942180 intron Ir41a + chr2R 4943426 intron Ir41a + chr2R_37_4940001 chr2R_4940001 RAL-304_100b 1044 chr2R 5021609 5021610 chr2R 17409153 17409165 4 12387551 48.0 26.0 37.0 0.1 12387556 chr2R 5021609 3` UTR Ir41a + chr2R 11215387 exon shn + chr2R 17409165 exon CG30101 - chr2R_4_11215001 chr2R_11215001 RAL-304_100b 1045 chr2R 5144960 5145014 chr2R 5145226 5145280 26 265 5.5 10.5 8.0 2.9 320 chr2R 5144960 intron Atf6 + chr2R 5145120 intron Atf6 + chr2R 5145280 intron Atf6 + chr2R_26_5145001 chr2R_5145001 RAL-304_100b 1046 chr2R 5179935 5179984 chr2R 5180093 5180142 20 152 8.5 7.5 8.0 2.2 207 chr2R 5179935 intron Nipped-A - chr2R 5180038 intron Nipped-A - chr2R 5180142 intron Nipped-A - chr2R_20_5180001 chr2R_5180001 RAL-304_100b 1047 chr2R 5209770 5209825 chr2R 5210319 5210374 42 545 14.5 7.5 11.0 3.5 604 chr2R 5209770 intron Nipped-A - chr2R 5210072 intron Nipped-A - chr2R 5210374 intron Nipped-A - chr2R_42_5210001 chr2R_5210001 RAL-304_100b 1048 chr2R 5237087 5237125 chr2R 5237188 5237226 19 101 12.0 16.5 14.2 1.2 139 chr2R 5237087 intron Nipped-A - chr2R 5237156 intron Nipped-A - chr2R 5237226 intron Nipped-A - chr2R_19_5235001 chr2R_5235001 RAL-304_100b 1049 chr2R 5240205 5240227 chr2R 5240306 5240328 9 100 24.0 21.0 22.5 0.4 123 chr2R 5240205 intron Nipped-A - chr2R 5240266 intron Nipped-A - chr2R 5240328 intron Nipped-A - chr2R_9_5240001 chr2R_5240001 RAL-304_100b 1050 chr2R 5240230 5240238 chr2R 5240295 5240329 5 79 22.0 18.0 20.0 0.2 99 chr2R 5240230 intron Nipped-A - chr2R 5240280 intron Nipped-A - chr2R 5240329 intron Nipped-A - chr2R_5_5240001 chr2R_5240001 RAL-304_100b 1051 chr2R 5266095 5266151 chr2R 5266203 5266259 43 104 147.5 167.0 157.2 0.3 164 chr2R 5266095 intron d4 + chr2R 5266177 intron d4 + chr2R 5266259 intron d4 + chr2R_43_5265001 chr2R_5265001 RAL-304_100b 1052 chr2R 5363467 5363491 chr2R 5363570 5363594 12 103 17.0 11.0 14.0 0.8 127 chr2R 5363467 5` UTR CR42646 + chr2R 5363530 intron CR42646 + chr2R 5363594 intron CR42646 + chr2R_12_5360001 chr2R_5360001 RAL-304_100b 1053 chr2R 5363493 5363519 chr2R 5363565 5363622 17 98 9.0 11.0 10.0 1.5 129 chr2R 5363493 5` UTR CR42646 + chr2R 5363558 intron CR42646 + chr2R 5363622 intron CR42646 + chr2R_17_5360001 chr2R_5360001 RAL-304_100b 1054 chr2R 5417981 5418026 chr2R 5420627 5420683 Burdock 24 2653 7.0 15.0 11.0 2.0 2702 chr2R 5417981 intron laccase2 + chr2R 5419332 intron laccase2 + chr2R 5420683 intron laccase2 + chr2R_24_5415001 chr2R_5415001 RAL-304_100b 1055 chr2R 5460499 5460506 chr2R 5460628 5460635 8 128 46.0 16.5 31.2 0.2 136 chr2R 5460499 intergenic not near genes chr2R 5460567 intergenic not near genes chr2R 5460635 intergenic not near genes chr2R_8_5460001 chr2R_5460001 RAL-304_100b 1056 chr2R 5460507 5460557 chr2R 5460624 5460643 66 119 11.5 13.0 12.2 5.0 136 chr2R 5460507 intergenic not near genes chr2R 5460575 intergenic not near genes chr2R 5460643 intergenic not near genes chr2R_66_5460001 chr2R_5460001 RAL-304_100b 1057 chr2R 5543206 5543214 chr2R 5547314 5547323 invader1 7 4109 0.0 26.5 13.2 0.5 4117 chr2R 5543206 intron CG30438 + chr2R 5545264 intron CG30438 + chr2R 5547323 intron CG30438 + chr2R_7_5545001 chr2R_5545001 RAL-304_100b 1058 chr2R 5543218 5543221 chr2R 5547303 5547315 invader1 4 4098 0.0 21.0 10.5 0.3 4097 chr2R 5543218 intron CG30438 + chr2R 5545266 intron CG30438 + chr2R 5547315 intron CG30438 + chr2R_4_5545001 chr2R_5545001 RAL-304_100b 1059 chr2R 5581403 5581416 chr2R 5627613 5627650 12 46230 16.0 94.5 55.2 0.2 46247 chr2R 5581403 intergenic not near genes chr2R 5604526 intron Fis1 - chr2R 5627650 intergenic not near genes chr2R_12_5600001 chr2R_5600001 RAL-304_100b 1060 chr2R 5611791 5611832 chr2R 5611904 5611959 38 121 12.5 18.0 15.2 2.3 168 chr2R 5611791 intergenic CG17508 + chr2R 5611875 intergenic CG17508 + chr2R 5611959 intergenic CG17508 + chr2R_38_5610001 chr2R_5610001 RAL-304_100b 1061 chr2R 5717013 5717057 chr2R 5717114 5717158 20 100 2.0 7.5 4.8 3.4 145 chr2R 5717013 intron ap - chr2R 5717086 intron ap - chr2R 5717158 intron ap - chr2R_20_5715001 chr2R_5715001 RAL-304_100b 1062 chr2R 5722557 5722595 chr2R 5722749 5722765 6 188 7.0 1.5 4.2 1.2 208 chr2R 5722557 intron ap - chr2R 5722661 intron ap - chr2R 5722765 intron ap - chr2R_6_5720001 chr2R_5720001 RAL-304_100b 1063 chr2R 5606805 5606815 chr2R 5736772 5736778 9 129964 45.0 86.5 65.8 0.1 129973 chr2R 5606805 intergenic not near genes chr2R 5671792 5` UTR kune + chr2R 5736778 intergenic not near genes chr2R_9_5670001 chr2R_5670001 RAL-304_100b 1064 chr2R 5606784 5606842 chr2R 5736779 5736805 6 129969 60.5 83.0 71.8 0.1 130021 chr2R 5606784 intergenic not near genes chr2R 5671794 5` UTR kune + chr2R 5736805 intergenic not near genes chr2R_6_5670001 chr2R_5670001 RAL-304_100b 1065 chr2R 5750424 5750454 chr2R 5750541 5750571 16 115 14.0 12.0 13.0 1.1 147 chr2R 5750424 intergenic not near genes chr2R 5750498 intergenic not near genes chr2R 5750571 intergenic not near genes chr2R_16_5750001 chr2R_5750001 RAL-304_100b 1066 chr2R 5772503 5772550 chr2R 5772622 5772669 30 113 11.0 8.5 9.8 2.8 166 chr2R 5772503 3` UTR Gp210 + chr2R 5772586 3` UTR Gp210 + chr2R 5772669 3` UTR Gp210 + chr2R_30_5770001 chr2R_5770001 RAL-304_100b 1067 chr2R 5772816 5772858 chr2R 5772923 5772965 19 104 9.0 9.0 9.0 1.9 149 chr2R 5772816 3` UTR Gp210 + chr2R 5772890 3` UTR Gp210 + chr2R 5772965 3` UTR Gp210 + chr2R_19_5770001 chr2R_5770001 RAL-304_100b 1068 chr2R 5790438 5790492 chr2R 5790548 5790602 24 108 6.5 5.0 5.8 3.5 164 chr2R 5790438 intergenic not near genes chr2R 5790520 intergenic not near genes chr2R 5790602 intergenic not near genes chr2R_24_5790001 chr2R_5790001 RAL-304_100b 1069 chr2R 5834072 5834097 chr2R 5834264 5834289 16 192 26.0 7.0 16.5 0.9 217 chr2R 5834072 intron dpr12 + chr2R 5834180 intron dpr12 + chr2R 5834289 intron dpr12 + chr2R_16_5830001 chr2R_5830001 RAL-304_100b 1070 chr2R 5834099 5834128 chr2R 5834262 5834320 24 184 12.5 6.0 9.2 2.4 221 chr2R 5834099 intron dpr12 + chr2R 5834210 intron dpr12 + chr2R 5834320 intron dpr12 + chr2R_24_5830001 chr2R_5830001 RAL-304_100b 1071 chr2R 5869250 5869308 chr2R 5874351 5874409 flea 29 5099 10.5 12.5 11.5 2.3 5159 chr2R 5869250 intergenic not near genes chr2R 5871830 intergenic not near genes chr2R 5874409 intergenic not near genes chr2R_29_5870001 chr2R_5870001 RAL-304_100b 1072 chr2R 5885340 5885376 chr2R 5885494 5885530 32 152 7.5 9.5 8.5 3.4 190 chr2R 5885340 5` UTR CR44125 + chr2R 5885435 5` UTR CR44125 + chr2R 5885530 5` UTR CR44125 + chr2R_32_5885001 chr2R_5885001 RAL-304_100b 1073 chr2R 5886650 5886679 chr2R 5886796 5886818 12 145 12.0 5.5 8.8 1.2 168 chr2R 5886650 intergenic CR44125 + chr2R 5886734 intergenic CR44125 + chr2R 5886818 intergenic CR44125 + chr2R_12_5885001 chr2R_5885001 RAL-304_100b 1074 chr2R 5888035 5888055 chr2R 5888170 5888190 15 133 26.0 9.5 17.8 0.8 155 chr2R 5888035 intergenic not near genes chr2R 5888112 intergenic not near genes chr2R 5888190 intergenic not near genes chr2R_15_5885001 chr2R_5885001 RAL-304_100b 1075 chr2R 5888057 5888093 chr2R 5888169 5888228 26 129 15.0 9.0 12.0 2.0 171 chr2R 5888057 intergenic not near genes chr2R 5888142 intergenic not near genes chr2R 5888228 intergenic not near genes chr2R_26_5885001 chr2R_5885001 RAL-304_100b 1076 chr2R 5902137 5902155 chr2R 5909721 5909739 17.6 11 7583 13.5 7.5 10.5 1.0 7602 chr2R 5902137 intron CG43366 + chr2R 5905938 intron CG43366 + chr2R 5909739 intron CG43366 + chr2R_11_5905001 chr2R_5905001 RAL-304_100b 1077 chr2R 5902156 5902191 chr2R 5909715 5909775 17.6 9 7581 7.5 6.0 6.8 1.2 7619 chr2R 5902156 intron CG43366 + chr2R 5905966 intron CG43366 + chr2R 5909775 intron CG43366 + chr2R_9_5905001 chr2R_5905001 RAL-304_100b 1078 chr2R 6055186 6055224 chr2R 6055296 6055335 30 110 19.0 9.5 14.2 2.0 149 chr2R 6055186 intron CCHa2-R + chr2R 6055260 intron CCHa2-R + chr2R 6055335 intron CCHa2-R + chr2R_30_6055001 chr2R_6055001 RAL-304_100b 1079 chr2R 6088345 6088389 chr2R 6088463 6088507 30 116 11.0 12.0 11.5 2.4 162 chr2R 6088345 intergenic not near genes chr2R 6088426 intergenic not near genes chr2R 6088507 intergenic not near genes chr2R_30_6085001 chr2R_6085001 RAL-304_100b 1080 chr2R 6096700 6096708 chr2R 6101919 6101931 BS 12 5220 57.5 26.5 42.0 0.3 5231 chr2R 6096700 intron EcR - chr2R 6099316 intron EcR - chr2R 6101931 intron EcR - chr2R_12_6095001 chr2R_6095001 RAL-304_100b 1081 chr2R 6096710 6096718 chr2R 6101918 6101941 BS 11 5219 49.0 26.0 37.5 0.3 5231 chr2R 6096710 intron EcR - chr2R 6099326 intron EcR - chr2R 6101941 intron EcR - chr2R_11_6095001 chr2R_6095001 RAL-304_100b 1082 chr2R 6096721 6096751 chr2R 6101912 6101958 BS 43 5211 17.0 20.5 18.8 2.2 5237 chr2R 6096721 intron EcR - chr2R 6099340 intron EcR - chr2R 6101958 intron EcR - chr2R_43_6095001 chr2R_6095001 RAL-304_100b 1083 chr2R 6151492 6151529 chr2R 6151593 6151604 21 96 10.5 8.5 9.5 2.0 112 chr2R 6151492 intron EcR - chr2R 6151548 intron EcR - chr2R 6151604 intron EcR - chr2R_21_6150001 chr2R_6150001 RAL-304_100b 1084 chr2R 6170848 6170904 chr2R 6170951 6171006 12 99 7.5 12.5 10.0 1.1 158 chr2R 6170848 intergenic not near genes chr2R 6170927 intergenic not near genes chr2R 6171006 intergenic not near genes chr2R_12_6170001 chr2R_6170001 RAL-304_100b 1085 chr2R 6178095 6178143 chr2R 6178246 6178292 32 149 5.0 8.0 6.5 4.3 197 chr2R 6178095 intergenic not near genes chr2R 6178194 intergenic not near genes chr2R 6178292 intergenic not near genes chr2R_32_6175001 chr2R_6175001 RAL-304_100b 1086 chr2R 6178655 6178666 chr2R 6178767 6178778 9 111 27.0 14.0 20.5 0.4 123 chr2R 6178655 intergenic not near genes chr2R 6178716 intergenic not near genes chr2R 6178778 intergenic not near genes chr2R_9_6175001 chr2R_6175001 RAL-304_100b 1087 chr2R 6178668 6178712 chr2R 6178765 6178824 38 110 10.5 13.5 12.0 2.9 156 chr2R 6178668 intergenic not near genes chr2R 6178746 intergenic not near genes chr2R 6178824 intergenic not near genes chr2R_38_6175001 chr2R_6175001 RAL-304_100b 1088 chr2R 6179678 6179733 chr2R 6179926 6179960 58 238 9.0 22.0 15.5 3.5 282 chr2R 6179678 intergenic CG8343 + chr2R 6179819 exon CG8343 + chr2R 6179960 exon CG8343 + chr2R_58_6175001 chr2R_6175001 RAL-304_100b 1089 chr2R 6194661 6194697 chr2R 6194769 6194805 33 105 22.5 33.5 28.0 1.1 144 chr2R 6194661 intron Ptr - chr2R 6194733 intron Ptr - chr2R 6194805 intron Ptr - chr2R_33_6190001 chr2R_6190001 RAL-304_100b 1090 chr2R 6236205 6236225 chr2R 6236306 6236315 19 107 24.5 0.5 12.5 1.4 110 chr2R 6236205 intron bin3 + chr2R 6236260 intron bin3 + chr2R 6236315 intron bin3 + chr2R_19_6235001 chr2R_6235001 RAL-304_100b 1091 chr2R 6236226 6236245 chr2R 6236303 6236307 11 87 12.5 0.5 6.5 1.5 81 chr2R 6236226 intron bin3 + chr2R 6236266 intron bin3 + chr2R 6236307 intron bin3 + chr2R_11_6235001 chr2R_6235001 RAL-304_100b 1092 chr2R 6247784 6247838 chr2R 6247887 6247941 40 99 8.5 12.0 10.2 3.6 157 chr2R 6247784 intron Pld + chr2R 6247862 intron Pld + chr2R 6247941 intron Pld + chr2R_40_6245001 chr2R_6245001 RAL-304_100b 1093 chr2R 6494506 6494552 chr2R 6499293 6499339 F-element 35 4783 15.5 8.5 12.0 2.7 4833 chr2R 6494506 intergenic not near genes chr2R 6496922 intergenic not near genes chr2R 6499339 intergenic not near genes chr2R_35_6495001 chr2R_6495001 RAL-304_100b 1094 chr2R 6500934 6500946 chr2R 6501054 6501066 9 118 35.5 20.0 27.8 0.3 132 chr2R 6500934 intergenic not near genes chr2R 6501000 intergenic not near genes chr2R 6501066 intergenic not near genes chr2R_9_6500001 chr2R_6500001 RAL-304_100b 1095 chr2R 6500947 6500992 chr2R 6501052 6501072 44 114 9.5 18.0 13.8 3.0 125 chr2R 6500947 intergenic not near genes chr2R 6501010 intergenic not near genes chr2R 6501072 intergenic not near genes chr2R_44_6500001 chr2R_6500001 RAL-304_100b 1096 chr2R 6547919 6547962 chr2R 6548107 6548144 43 186 17.5 15.0 16.2 2.5 225 chr2R 6547919 intron jing + chr2R 6548032 intron jing + chr2R 6548144 intron jing + chr2R_43_6545001 chr2R_6545001 RAL-304_100b 1097 chr2R 6579748 6579804 chr2R 6584859 6584888 flea 50 5109 10.5 14.5 12.5 3.7 5140 chr2R 6579748 intron jing + chr2R 6582318 intron jing + chr2R 6584888 intron jing + chr2R_50_6580001 chr2R_6580001 RAL-304_100b 1098 chr2R 6691099 6691146 chr2R 6691203 6691250 29 103 16.5 12.0 14.2 1.9 151 chr2R 6691099 intron CG9422 + chr2R 6691174 intron CG9422 + chr2R 6691250 intron CG9422 + chr2R_29_6690001 chr2R_6690001 RAL-304_100b 1099 chr2R 6696586 6696597 chr2R 6696694 6696705 10 107 39.0 21.5 30.2 0.3 119 chr2R 6696586 5` UTR Mob4 - chr2R 6696646 5` UTR Mob4 - chr2R 6696705 intergenic Rab2 +,Mob4 - chr2R_10_6695001 chr2R_6695001 RAL-304_100b 1100 chr2R 6696599 6696612 chr2R 6696692 6696720 22 106 31.5 21.5 26.5 0.8 121 chr2R 6696599 5` UTR Mob4 - chr2R 6696660 5` UTR Mob4 - chr2R 6696720 intergenic Rab2 +,Mob4 - chr2R_22_6695001 chr2R_6695001 RAL-304_100b 1101 chr2R 6696613 6696642 chr2R 6696687 6696734 28 99 18.0 21.0 19.5 1.4 121 chr2R 6696613 5` UTR Mob4 - chr2R 6696674 intergenic Mob4 -,Rab2 + chr2R 6696734 intergenic Rab2 +,Mob4 - chr2R_28_6695001 chr2R_6695001 RAL-304_100b 1102 chr2R 6699566 6699622 chr2R 6699676 6699732 23 110 7.5 6.0 6.8 2.9 166 chr2R 6699566 intergenic Rab2 + chr2R 6699649 intergenic Rab2 + chr2R 6699732 intergenic Rab2 +,CG3409 -,CG45092 - chr2R_23_6695001 chr2R_6695001 RAL-304_100b 1103 chr2R 6712560 6712600 chr2R 6712682 6712712 11 121 17.0 14.5 15.8 0.7 152 chr2R 6712560 intron,intron CG3409 -,CG45092 - chr2R 6712636 intron,intron CG3409 -,CG45092 - chr2R 6712712 intron,intron CG3409 -,CG45092 - chr2R_11_6710001 chr2R_6710001 RAL-304_100b 1104 chr2R 6895386 6895438 chr2R 6895482 6895527 74 97 17.5 21.0 19.2 3.7 141 chr2R 6895386 intron CG30158 + chr2R 6895456 intron CG30158 + chr2R 6895527 intron CG30158 + chr2R_74_6895001 chr2R_6895001 RAL-304_100b 1105 chr2R 6952141 6952185 chr2R 6959746 6959790 opus 21 7602 13.5 8.0 10.8 1.8 7649 chr2R 6952141 intron,intron,exon mim -,CheB42c -,ppk25 + chr2R 6955966 intron,intron mim -,CheB42c - chr2R 6959790 intron,intron mim -,CheB42c - chr2R_21_6955001 chr2R_6955001 RAL-304_100b 1106 chr2R 6964258 6964268 chr2R 6964360 6964370 8 102 17.5 10.0 13.8 0.5 112 chr2R 6964258 intron,intron mim -,CheB42c - chr2R 6964314 intron,intron mim -,CheB42c - chr2R 6964370 intron,intron mim -,CheB42c - chr2R_8_6960001 chr2R_6960001 RAL-304_100b 1107 chr2R 6964272 6964291 chr2R 6964359 6964389 11 98 10.0 9.5 9.8 1.0 117 chr2R 6964272 intron,intron mim -,CheB42c - chr2R 6964330 intron,intron mim -,CheB42c - chr2R 6964389 intron,intron mim -,CheB42c - chr2R_11_6960001 chr2R_6960001 RAL-304_100b 1108 chr2R 6978613 6978671 chr2R 6978821 6978879 53 206 10.5 15.0 12.8 3.8 266 chr2R 6978613 intron vimar - chr2R 6978746 intron vimar - chr2R 6978879 intron vimar - chr2R_53_6975001 chr2R_6975001 RAL-304_100b 1109 chr2R 7103354 7103415 chr2R 7103455 7103516 43 94 28.5 25.0 26.8 1.5 162 chr2R 7103354 intron esn + chr2R 7103435 intron esn + chr2R 7103516 intron esn + chr2R_43_7100001 chr2R_7100001 RAL-304_100b 1110 chr2R 7139946 7139951 chr2R 7141441 7141468 hopper2 10 1512 22.0 36.0 29.0 0.3 1522 chr2R 7139946 intergenic not near genes chr2R 7140707 intergenic not near genes chr2R 7141468 intergenic not near genes chr2R_10_7140001 chr2R_7140001 RAL-304_100b 1111 chr2R 7139952 7139953 chr2R 7141436 7141469 hopper2 5 1502 19.5 31.5 25.5 0.2 1517 chr2R 7139952 intergenic not near genes chr2R 7140710 intergenic not near genes chr2R 7141469 intergenic not near genes chr2R_5_7140001 chr2R_7140001 RAL-304_100b 1112 chr2R 7160527 7160583 chr2R 7160630 7160685 29 99 10.5 8.5 9.5 2.8 158 chr2R 7160527 intron pk + chr2R 7160606 intron pk + chr2R 7160685 intron pk + chr2R_29_7160001 chr2R_7160001 RAL-304_100b 1113 chr2R 7164246 7164254 chr2R 7164462 7164470 6 216 24.0 21.0 22.5 0.3 224 chr2R 7164246 intron pk + chr2R 7164358 intron pk + chr2R 7164470 intron pk + chr2R_6_7160001 chr2R_7160001 RAL-304_100b 1114 chr2R 7164255 7164288 chr2R 7164461 7164504 25 210 12.0 20.5 16.2 1.5 249 chr2R 7164255 intron pk + chr2R 7164380 intron pk + chr2R 7164504 intron pk + chr2R_25_7160001 chr2R_7160001 RAL-304_100b 1115 chr2R 7196552 7196594 chr2R 7201346 7201380 F-element 17 4797 11.0 7.5 9.2 1.7 4828 chr2R 7196552 intron pk + chr2R 7198966 intron pk + chr2R 7201380 intron pk + chr2R_17_7195001 chr2R_7195001 RAL-304_100b 1116 chr2R 7209851 7209871 chr2R 7217604 7217618 roo 12 7768 13.0 21.0 17.0 0.7 7767 chr2R 7209851 intron pk + chr2R 7213734 intron pk + chr2R 7217618 intron pk + chr2R_12_7210001 chr2R_7210001 RAL-304_100b 1117 chr2R 7235796 7235851 chr2R 7240913 7240953 jockey 54 5114 13.0 15.5 14.2 3.6 5157 chr2R 7235796 intergenic not near genes chr2R 7238374 intergenic not near genes chr2R 7240953 intergenic not near genes chr2R_54_7235001 chr2R_7235001 RAL-304_100b 1118 chr2R 7254781 7254840 chr2R 7254921 7254979 62 135 17.0 24.0 20.5 2.9 198 chr2R 7254781 5` UTR CR45280 + chr2R 7254880 5` UTR CR45280 + chr2R 7254979 5` UTR CR45280 + chr2R_62_7250001 chr2R_7250001 RAL-304_100b 1119 chr2R 7286522 7286535 chr2R 7286652 7286665 15 129 16.5 13.0 14.8 0.9 143 chr2R 7286522 intron pwn + chr2R 7286594 intron pwn + chr2R 7286665 intron pwn + chr2R_15_7285001 chr2R_7285001 RAL-304_100b 1120 chr2R 7286536 7286567 chr2R 7286651 7286697 26 122 5.0 13.0 9.0 2.6 161 chr2R 7286536 intron pwn + chr2R 7286616 intron pwn + chr2R 7286697 intron pwn + chr2R_26_7285001 chr2R_7285001 RAL-304_100b 1121 chr2R 7310744 7310749 chr2R 7310851 7310856 6 107 36.5 25.5 31.0 0.2 112 chr2R 7310744 intergenic not near genes chr2R 7310800 intergenic not near genes chr2R 7310856 intergenic not near genes chr2R_6_7310001 chr2R_7310001 RAL-304_100b 1122 chr2R 7310750 7310796 chr2R 7310847 7310903 44 100 14.0 22.5 18.2 2.3 153 chr2R 7310750 intergenic not near genes chr2R 7310826 intergenic not near genes chr2R 7310903 intergenic CG12164 + chr2R_44_7310001 chr2R_7310001 RAL-304_100b 1123 chr2R 7389545 7389556 chr2R 7389672 7389683 7 126 38.0 8.5 23.2 0.3 138 chr2R 7389545 intron CG11107 + chr2R 7389614 intron CG11107 + chr2R 7389683 intron CG11107 + chr2R_7_7385001 chr2R_7385001 RAL-304_100b 1124 chr2R 7389560 7389600 chr2R 7389671 7389727 35 120 13.0 8.5 10.8 3.0 167 chr2R 7389560 intron CG11107 + chr2R 7389644 intron CG11107 + chr2R 7389727 intron CG11107 + chr2R_35_7385001 chr2R_7385001 RAL-304_100b 1125 chr2R 7417878 7418168 chr2R 7417989 7418257 60 104 7.5 14.0 10.8 5.1 379 chr2R 7417878 intergenic not near genes chr2R 7418068 intergenic not near genes chr2R 7418257 intergenic not near genes chr2R_60_7415001 chr2R_7415001 RAL-304_100b 1126 chr2R 7434869 7434892 chr2R 7439195 7439218 Juan 14 4325 20.5 20.5 20.5 0.7 4349 chr2R 7434869 3` UTR so + chr2R 7437044 intergenic not near genes chr2R 7439218 intergenic not near genes chr2R_14_7435001 chr2R_7435001 RAL-304_100b 1127 chr2R 7434895 7434911 chr2R 7439185 7439237 Juan 6 4320 18.0 12.0 15.0 0.4 4342 chr2R 7434895 intergenic so + chr2R 7437066 intergenic not near genes chr2R 7439237 intergenic not near genes chr2R_6_7435001 chr2R_7435001 RAL-304_100b 1128 chr2R 7459258 7459297 chr2R 7459371 7459374 21 110 14.0 4.0 9.0 2.1 116 chr2R 7459258 intergenic Inos -,CG11141 - chr2R 7459316 intergenic CG11141 -,Inos - chr2R 7459374 intergenic CG11141 -,Inos - chr2R_21_7455001 chr2R_7455001 RAL-304_100b 1129 chr2R 7488887 7488947 chr2R 7489005 7489065 48 116 13.0 11.5 12.2 3.6 178 chr2R 7488887 intron wech - chr2R 7488976 intron wech - chr2R 7489065 intron wech - chr2R_48_7485001 chr2R_7485001 RAL-304_100b 1130 chr2R 7554087 7554138 chr2R 7554193 7554250 50 108 18.5 12.5 15.5 3.0 163 chr2R 7554087 intron Corin + chr2R 7554168 intron Corin + chr2R 7554250 intron Corin + chr2R_50_7550001 chr2R_7550001 RAL-304_100b 1131 chr2R 7562737 7562754 chr2R 7562839 7562861 16 104 22.0 19.0 20.5 0.7 124 chr2R 7562737 3` UTR Corin + chr2R 7562799 3` UTR Corin + chr2R 7562861 3` UTR Corin + chr2R_16_7560001 chr2R_7560001 RAL-304_100b 1132 chr2R 7604728 7604750 chr2R 7604882 7604887 32 148 20.5 11.5 16.0 1.9 159 chr2R 7604728 intron CG1358 - chr2R 7604808 intron CG1358 - chr2R 7604887 intron CG1358 - chr2R_32_7600001 chr2R_7600001 RAL-304_100b 1133 chr2R 7604751 7604776 chr2R 7604880 7604930 35 133 13.5 11.0 12.2 2.7 179 chr2R 7604751 intron CG1358 - chr2R 7604840 intron CG1358 - chr2R 7604930 intron CG1358 - chr2R_35_7600001 chr2R_7600001 RAL-304_100b 1134 chr2R 7608386 7608445 chr2R 7613614 7613673 I-element 10 5225 5.0 0.0 2.5 2.9 5287 chr2R 7608386 intron CG1358 - chr2R 7611030 intron CG1358 - chr2R 7613673 intron CG1358 - chr2R_10_7610001 chr2R_7610001 RAL-304_100b 1135 chr2R 7623808 7623864 chr2R 7624614 7624659 60 800 135.0 119.5 127.2 0.5 851 chr2R 7623808 intron CG43340 + chr2R 7624234 intron CG43340 + chr2R 7624659 intron CG43340 + chr2R_60_7620001 chr2R_7620001 RAL-304_100b 1136 chr2R 7769712 7769763 chr2R 7769814 7769848 24 101 8.0 6.5 7.2 2.9 136 chr2R 7769712 intron,intron CG30497 -,CG45093 - chr2R 7769780 intron,intron CG30497 -,CG45093 - chr2R 7769848 intron,intron CG30497 -,CG45093 - chr2R_24_7765001 chr2R_7765001 RAL-304_100b 1137 chr2R 7815654 7815703 chr2R 7822140 7822152 Burdock 41 6488 13.0 16.0 14.5 2.6 6498 chr2R 7815654 intergenic CG1882 + chr2R 7818903 intergenic not near genes chr2R 7822152 3` UTR cathD - chr2R_41_7815001 chr2R_7815001 RAL-304_100b 1138 chr2R 7862244 7862250 chr2R 7867355 7867361 flea 4 5111 34.0 10.5 22.2 0.2 5117 chr2R 7862244 intron Dgk - chr2R 7864802 intron Dgk - chr2R 7867361 intron Dgk - chr2R_4_7860001 chr2R_7860001 RAL-304_100b 1139 chr2R 7869167 7869216 chr2R 7873978 7874007 Doc 29 4806 19.5 20.5 20.0 1.4 4840 chr2R 7869167 intron Dgk - chr2R 7871587 intron Dgk - chr2R 7874007 intron Dgk - chr2R_29_7870001 chr2R_7870001 RAL-304_100b 1140 chr2R 7897136 7897141 chr2R 7897250 7897255 8 114 0.0 41.0 20.5 0.4 119 chr2R 7897136 intron CG30377 + chr2R 7897196 intron CG30377 + chr2R 7897255 intron CG30377 + chr2R_8_7895001 chr2R_7895001 RAL-304_100b 1141 chr2R 7897144 7897154 chr2R 7897249 7897268 11 111 0.0 41.0 20.5 0.5 124 chr2R 7897144 intron CG30377 + chr2R 7897206 intron CG30377 + chr2R 7897268 intron CG30377 + chr2R_11_7895001 chr2R_7895001 RAL-304_100b 1142 chr2R 7916398 7916457 chr2R 7916508 7916567 56 105 13.0 14.0 13.5 3.9 169 chr2R 7916398 5` UTR CG12159 - chr2R 7916482 intergenic CG12159 -,Cul1 + chr2R 7916567 intergenic CG12159 -,Cul1 + chr2R_56_7915001 chr2R_7915001 RAL-304_100b 1143 chr2R 7942904 7942958 chr2R 7943186 7943234 54 278 6.5 13.5 10.0 4.9 330 chr2R 7942904 intron CG14764 - chr2R 7943069 intron CG14764 - chr2R 7943234 intron CG14764 - chr2R_54_7940001 chr2R_7940001 RAL-304_100b 1144 chr2R 7997416 7997435 chr2R 7997547 7997566 16 130 22.5 12.5 17.5 0.9 150 chr2R 7997416 exon Hey - chr2R 7997491 intron Hey - chr2R 7997566 intron Hey - chr2R_16_7995001 chr2R_7995001 RAL-304_100b 1145 chr2R 7997436 7997455 chr2R 7997545 7997586 14 128 9.5 10.5 10.0 1.3 150 chr2R 7997436 intron Hey - chr2R 7997511 intron Hey - chr2R 7997586 intron Hey - chr2R_14_7995001 chr2R_7995001 RAL-304_100b 1146 chr2R 7999577 7999585 chr2R 7999685 7999693 4 108 5.0 6.0 5.5 0.6 116 chr2R 7999577 intergenic not near genes chr2R 7999635 intergenic not near genes chr2R 7999693 intergenic not near genes chr2R_4_7995001 chr2R_7995001 RAL-304_100b 1147 chr2R 8015634 8015676 chr2R 8017677 8017724 42 2042 15.5 14.0 14.8 2.7 2090 chr2R 8015634 intergenic mir-4981 + chr2R 8016679 intergenic not near genes chr2R 8017724 intergenic not near genes chr2R_42_8015001 chr2R_8015001 RAL-304_100b 1148 chr2R 8089239 8089249 chr2R 8089350 8089360 11 110 38.0 17.0 27.5 0.4 121 chr2R 8089239 3` UTR sut2 + chr2R 8089300 intergenic sut2 +,sut3 + chr2R 8089360 intergenic sut2 +,sut3 + chr2R_11_8085001 chr2R_8085001 RAL-304_100b 1149 chr2R 8089251 8089287 chr2R 8089342 8089398 34 107 14.0 13.0 13.5 2.3 147 chr2R 8089251 3` UTR sut2 + chr2R 8089324 intergenic sut2 +,sut3 + chr2R 8089398 intergenic sut3 +,sut2 + chr2R_34_8085001 chr2R_8085001 RAL-304_100b 1150 chr2R 8121451 8121476 chr2R 8121564 8121589 14 109 36.5 16.0 26.2 0.5 138 chr2R 8121451 intron Asap - chr2R 8121520 intron Asap - chr2R 8121589 intron Asap - chr2R_14_8120001 chr2R_8120001 RAL-304_100b 1151 chr2R 8121479 8121512 chr2R 8121562 8121590 59 93 12.0 15.0 13.5 4.1 111 chr2R 8121479 intron Asap - chr2R 8121534 intron Asap - chr2R 8121590 intron Asap - chr2R_59_8120001 chr2R_8120001 RAL-304_100b 1152 chr2R 8157874 8157909 chr2R 8157987 8158001 39 108 17.0 17.5 17.2 2.1 127 chr2R 8157874 5` UTR CR44068 + chr2R 8157938 5` UTR CR44068 + chr2R 8158001 5` UTR CR44068 + chr2R_39_8155001 chr2R_8155001 RAL-304_100b 1153 chr2R 8160909 8160945 chr2R 8161024 8161060 1360 32 113 26.0 32.0 29.0 1.1 151 chr2R 8160909 exon CG8708 - chr2R 8160984 intron CG8708 - chr2R 8161060 intron CG8708 - chr2R_32_8160001 chr2R_8160001 RAL-304_100b 1154 chr2R 8203721 8203776 chr2R 8203836 8203893 28 116 12.0 2.0 7.0 3.5 172 chr2R 8203721 intron LRP1 + chr2R 8203807 intron LRP1 + chr2R 8203893 intron LRP1 + chr2R_28_8200001 chr2R_8200001 RAL-304_100b 1155 chr2R 8236011 8236053 chr2R 8236117 8236158 21 102 13.0 5.0 9.0 2.1 147 chr2R 8236011 intergenic not near genes chr2R 8236084 intergenic not near genes chr2R 8236158 intergenic not near genes chr2R_21_8235001 chr2R_8235001 RAL-304_100b 1156 chr2R 8305463 8305470 chr2R 8305573 8305580 7 110 19.5 12.5 16.0 0.4 117 chr2R 8305463 intergenic CR44447 + chr2R 8305522 intergenic CR44447 + chr2R 8305580 intergenic CR44447 + chr2R_7_8305001 chr2R_8305001 RAL-304_100b 1157 chr2R 8305476 8305513 chr2R 8305571 8305622 21 107 10.0 10.5 10.2 1.9 146 chr2R 8305476 intergenic CR44447 + chr2R 8305549 intergenic CR44447 + chr2R 8305622 intergenic not near genes chr2R_21_8305001 chr2R_8305001 RAL-304_100b 1158 chr2R 8330837 8330854 chr2R 8331348 8331365 roo 12 507 34.5 12.0 23.2 0.5 528 chr2R 8330837 intron pdm3 + chr2R 8331101 intron pdm3 + chr2R 8331365 intron pdm3 + chr2R_12_8330001 chr2R_8330001 RAL-304_100b 1159 chr2R 8330856 8330888 chr2R 8331346 8331393 roo 20 504 18.0 11.5 14.8 1.3 537 chr2R 8330856 intron pdm3 + chr2R 8331124 intron pdm3 + chr2R 8331393 intron pdm3 + chr2R_20_8330001 chr2R_8330001 RAL-304_100b 1160 chr2R 8387402 8387460 chr2R 8387505 8387563 47 101 13.5 16.5 15.0 2.9 161 chr2R 8387402 intron pdm3 + chr2R 8387482 intron pdm3 + chr2R 8387563 intron pdm3 + chr2R_47_8385001 chr2R_8385001 RAL-304_100b 1161 chr2R 8398188 8398199 chr2R 8402994 8403005 Doc 7 4806 49.0 19.0 34.0 0.2 4817 chr2R 8398188 intron CG2121 - chr2R 8400596 intron CG2121 - chr2R 8403005 intron CG2121 - chr2R_7_8400001 chr2R_8400001 RAL-304_100b 1162 chr2R 8398202 8398219 chr2R 8402992 8403024 Doc 25 4801 33.5 17.5 25.5 0.9 4822 chr2R 8398202 intron CG2121 - chr2R 8400613 intron CG2121 - chr2R 8403024 intron CG2121 - chr2R_25_8400001 chr2R_8400001 RAL-304_100b 1163 chr2R 8398220 8398240 chr2R 8402990 8403046 Doc 17 4799 19.5 16.5 18.0 0.9 4826 chr2R 8398220 intron CG2121 - chr2R 8400633 intron CG2121 - chr2R 8403046 intron CG2121 - chr2R_17_8400001 chr2R_8400001 RAL-304_100b 1164 chr2R 8406052 8406055 chr2R 8406154 8406157 4 102 50.0 13.5 31.8 0.1 105 chr2R 8406052 intron CG2121 - chr2R 8406104 intron CG2121 - chr2R 8406157 intron CG2121 - chr2R_4_8405001 chr2R_8405001 RAL-304_100b 1165 chr2R 8406056 8406105 chr2R 8406153 8406207 39 99 15.5 13.0 14.2 2.6 151 chr2R 8406056 intron CG2121 - chr2R 8406132 intron CG2121 - chr2R 8406207 intron CG2121 - chr2R_39_8405001 chr2R_8405001 RAL-304_100b 1166 chr2R 8489709 8489756 chr2R 8489804 8489816 20 93 8.5 5.5 7.0 2.5 107 chr2R 8489709 intron mtt - chr2R 8489762 intron mtt - chr2R 8489816 intron mtt - chr2R_20_8485001 chr2R_8485001 RAL-304_100b 1167 chr2R 8508756 8508794 chr2R 8508841 8508858 49 101 9.5 17.0 13.2 3.5 102 chr2R 8508756 intron mtt - chr2R 8508807 intron mtt - chr2R 8508858 intron mtt - chr2R_49_8505001 chr2R_8505001 RAL-304_100b 1168 chr2R 8581294 8581305 chr2R 8581413 8581415 4 115 44.5 34.0 39.2 0.1 121 chr2R 8581294 exon CG42326 - chr2R 8581354 exon CG42326 - chr2R 8581415 exon CG42326 - chr2R_4_8580001 chr2R_8580001 RAL-304_100b 1169 chr2R 8581310 8581337 chr2R 8581411 8581412 23 103 23.5 31.5 27.5 0.8 102 chr2R 8581310 exon CG42326 - chr2R 8581361 exon CG42326 - chr2R 8581412 exon CG42326 - chr2R_23_8580001 chr2R_8580001 RAL-304_100b 1170 chr2R 8635909 8635933 chr2R 8636007 8636036 7 101 0.0 18.5 9.2 0.7 127 chr2R 8635909 intergenic not near genes chr2R 8635972 intergenic not near genes chr2R 8636036 intergenic not near genes chr2R_7_8635001 chr2R_8635001 RAL-304_100b 1171 chr2R 8714710 8714723 chr2R 8714782 8714835 18 101 0.0 11.0 5.5 2.8 125 chr2R 8714710 3` UTR PGRP-SC1b + chr2R 8714772 3` UTR PGRP-SC1b + chr2R 8714835 3` UTR PGRP-SC1b + chr2R_18_8710001 chr2R_8710001 RAL-304_100b 1172 chr2R 8722738 8722795 chr2R 8723004 8723056 pogo 64 261 11.0 14.5 12.8 4.6 318 chr2R 8722738 intron CG14767 - chr2R 8722897 intron CG14767 - chr2R 8723056 intron CG14767 - chr2R_64_8720001 chr2R_8720001 RAL-304_100b 1173 chr2R 8755158 8755213 chr2R 8755646 8755664 33 484 15.0 19.5 17.2 1.8 506 chr2R 8755158 intron CG8740 + chr2R 8755411 intron CG8740 + chr2R 8755664 intron CG8740 + chr2R_33_8755001 chr2R_8755001 RAL-304_100b 1174 chr2R 8777901 8777945 chr2R 8784129 8784174 diver 16 6228 6.0 13.0 9.5 1.5 6273 chr2R 8777901 intergenic not near genes chr2R 8781038 intergenic not near genes chr2R 8784174 intergenic not near genes chr2R_16_8780001 chr2R_8780001 RAL-304_100b 1175 chr2R 8958383 8958436 chr2R 8958501 8958554 49 117 9.0 14.5 11.8 3.8 171 chr2R 8958383 intron babo + chr2R 8958468 intron babo + chr2R 8958554 intron babo + chr2R_49_8955001 chr2R_8955001 RAL-304_100b 1176 chr2R 8976177 8976225 chr2R 8976291 8976304 39 110 14.5 9.0 11.8 3.0 127 chr2R 8976177 intron CG8213 - chr2R 8976240 intron CG8213 - chr2R 8976304 intron CG8213 - chr2R_39_8975001 chr2R_8975001 RAL-304_100b 1177 chr2R 9076116 9076168 chr2R 9076217 9076269 33 98 11.0 9.5 10.2 2.9 153 chr2R 9076116 intron ana + chr2R 9076192 intron ana + chr2R 9076269 intron ana + chr2R_33_9075001 chr2R_9075001 RAL-304_100b 1178 chr2R 9078455 9078506 chr2R 9078558 9078609 25 102 10.5 12.0 11.2 2.0 154 chr2R 9078455 intergenic CG8083 + chr2R 9078532 intergenic CG8083 + chr2R 9078609 intergenic CG8083 + chr2R_25_9075001 chr2R_9075001 RAL-304_100b 1179 chr2R 9212671 9212684 chr2R 9213182 9213190 roo 8 510 39.5 21.0 30.2 0.3 519 chr2R 9212671 intergenic CR45309 + chr2R 9212930 intergenic CR45309 + chr2R 9213190 5` UTR CR45309 + chr2R_8_9210001 chr2R_9210001 RAL-304_100b 1180 chr2R 9212689 9212721 chr2R 9213177 9213207 roo 41 504 17.0 20.0 18.5 2.1 518 chr2R 9212689 intergenic CR45309 + chr2R 9212948 intergenic CR45309 + chr2R 9213207 5` UTR CR45309 + chr2R_41_9210001 chr2R_9210001 RAL-304_100b 1181 chr2R 9216224 9216279 chr2R 9216360 9216411 17 121 0.0 21.5 10.8 1.4 187 chr2R 9216224 intergenic not near genes chr2R 9216318 intergenic not near genes chr2R 9216411 intergenic not near genes chr2R_17_9215001 chr2R_9215001 RAL-304_100b 1182 chr2R 9224293 9224348 chr2R 9224484 9224539 35 186 11.5 10.0 10.8 3.0 246 chr2R 9224293 intergenic not near genes chr2R 9224416 intergenic not near genes chr2R 9224539 intergenic not near genes chr2R_35_9220001 chr2R_9220001 RAL-304_100b 1183 chr2R 9236364 9236420 chr2R 9236505 9236561 42 142 125.0 117.5 121.2 0.3 197 chr2R 9236364 intron hig - chr2R 9236462 intron hig - chr2R 9236561 intron hig - chr2R_42_9235001 chr2R_9235001 RAL-304_100b 1184 chr2R 9236580 9236625 chr2R 9236692 9236737 20 110 3.0 5.5 4.2 3.8 157 chr2R 9236580 intron hig - chr2R 9236658 intron hig - chr2R 9236737 intron hig - chr2R_20_9235001 chr2R_9235001 RAL-304_100b 1185 chr2R 9322357 9322373 chr2R 9322453 9322468 14 99 42.0 23.0 32.5 0.4 111 chr2R 9322357 intron,intron CG13739 -,CG13954 - chr2R 9322412 intron,intron CG13739 -,CG13954 - chr2R 9322468 intron,intron CG13739 -,CG13954 - chr2R_14_9320001 chr2R_9320001 RAL-304_100b 1186 chr2R 9322374 9322388 chr2R 9322451 9322491 21 95 33.5 21.5 27.5 0.7 117 chr2R 9322374 intron,intron CG13739 -,CG13954 - chr2R 9322432 intron,intron CG13739 -,CG13954 - chr2R 9322491 intron,intron CG13739 -,CG13954 - chr2R_21_9320001 chr2R_9320001 RAL-304_100b 1187 chr2R 9322390 9322403 chr2R 9322448 9322496 16 91 24.0 25.5 24.8 0.6 106 chr2R 9322390 intron,intron CG13739 -,CG13954 - chr2R 9322443 intron,intron CG13739 -,CG13954 - chr2R 9322496 intron,intron CG13739 -,CG13954 - chr2R_16_9320001 chr2R_9320001 RAL-304_100b 1188 chr2R 9325488 9325490 chr2R 9325607 9325609 4 119 0.5 12.5 6.5 0.5 121 chr2R 9325488 intron,intron CG13739 -,CG13954 - chr2R 9325548 intron,intron CG13739 -,CG13954 - chr2R 9325609 intron,intron CG13739 -,CG13954 - chr2R_4_9325001 chr2R_9325001 RAL-304_100b 1189 chr2R 9368108 9368150 chr2R 9368202 9368235 41 95 16.0 0.0 8.0 4.6 127 chr2R 9368108 intron CG13954 - chr2R 9368172 intron CG13954 - chr2R 9368235 intron CG13954 - chr2R_41_9365001 chr2R_9365001 RAL-304_100b 1190 chr2R 9466650 9466686 chr2R 9466756 9466792 34 100 12.0 17.5 14.8 2.2 142 chr2R 9466650 intron Camta + chr2R 9466721 intron Camta + chr2R 9466792 intron Camta + chr2R_34_9465001 chr2R_9465001 RAL-304_100b 1191 chr2R 9480054 9480103 chr2R 9490610 9490654 roo 19 10555 10.0 9.0 9.5 1.8 10600 chr2R 9480054 intergenic not near genes chr2R 9485354 intergenic not near genes chr2R 9490654 intergenic not near genes chr2R_19_9485001 chr2R_9485001 RAL-304_100b 1192 chr2R 9510638 9510698 chr2R 9510779 9510839 45 136 11.0 15.0 13.0 3.2 201 chr2R 9510638 exon brp + chr2R 9510738 intron brp + chr2R 9510839 exon brp + chr2R_45_9510001 chr2R_9510001 RAL-304_100b 1193 chr2R 9541612 9541655 chr2R 9541714 9541757 21 100 5.0 10.5 7.8 2.4 145 chr2R 9541612 intergenic brp +,CG1888 - chr2R 9541684 intergenic brp +,CG1888 - chr2R 9541757 intergenic CG1888 -,brp + chr2R_21_9540001 chr2R_9540001 RAL-304_100b 1194 chr2R 9561800 9561850 chr2R 9561912 9561953 30 111 0.0 7.5 3.8 6.2 153 chr2R 9561800 3` UTR,intron CR45281 -,CG1809 + chr2R 9561876 3` UTR,intron CR45281 -,CG1809 + chr2R 9561953 3` UTR,intron CR45281 -,CG1809 + chr2R_30_9560001 chr2R_9560001 RAL-304_100b 1195 chr2R 9624377 9624419 chr2R 9624470 9624520 32 87 30.0 35.0 32.5 1.0 143 chr2R 9624377 intron Mmp2 - chr2R 9624448 intron Mmp2 - chr2R 9624520 intron Mmp2 - chr2R_32_9620001 chr2R_9620001 RAL-304_100b 1196 chr2R 9624422 9624433 chr2R 9624469 9624492 11 66 28.5 34.5 31.5 0.3 70 chr2R 9624422 intron Mmp2 - chr2R 9624457 intron Mmp2 - chr2R 9624492 intron Mmp2 - chr2R_11_9620001 chr2R_9620001 RAL-304_100b 1197 chr2R 9672030 9672041 chr2R 9672161 9672172 9 130 15.0 12.5 13.8 0.6 142 chr2R 9672030 intron Mmp2 - chr2R 9672101 intron Mmp2 - chr2R 9672172 intron Mmp2 - chr2R_9_9670001 chr2R_9670001 RAL-304_100b 1198 chr2R 9672043 9672085 chr2R 9672159 9672214 19 127 5.5 12.0 8.8 1.9 171 chr2R 9672043 intron Mmp2 - chr2R 9672128 intron Mmp2 - chr2R 9672214 intron Mmp2 - chr2R_19_9670001 chr2R_9670001 RAL-304_100b 1199 chr2R 9699382 9699441 chr2R 9699494 9699546 53 106 22.5 11.0 16.8 3.0 164 chr2R 9699382 intergenic not near genes chr2R 9699464 intergenic not near genes chr2R 9699546 intergenic not near genes chr2R_53_9695001 chr2R_9695001 RAL-304_100b 1200 chr2R 9726595 9726643 chr2R 9734171 9734184 17.6 25 7573 13.0 5.0 9.0 2.5 7589 chr2R 9726595 intron sqa - chr2R 9730390 intron sqa - chr2R 9734184 intron sqa - chr2R_25_9730001 chr2R_9730001 RAL-304_100b 1201 chr2R 9761282 9761299 chr2R 9761383 9761400 22 100 8.5 29.0 18.8 1.1 118 chr2R 9761282 intron trpl + chr2R 9761341 intron trpl + chr2R 9761400 intron trpl + chr2R_22_9760001 chr2R_9760001 RAL-304_100b 1202 chr2R 9863142 9863187 chr2R 9863259 9863304 14 117 7.0 6.5 6.8 1.8 162 chr2R 9863142 intergenic not near genes chr2R 9863223 intergenic CG30010 + chr2R 9863304 intergenic CG30010 + chr2R_14_9860001 chr2R_9860001 RAL-304_100b 1203 chr2R 9871038 9871073 chr2R 9871549 9871584 roo 23 509 12.0 7.5 9.8 2.1 546 chr2R 9871038 intron cbx - chr2R 9871311 intron cbx - chr2R 9871584 intron,5` UTR cbx -,CG18446 + chr2R_23_9870001 chr2R_9870001 RAL-304_100b 1204 chr2R 9945419 9945425 chr2R 9945637 9945643 BS 6 219 26.0 12.0 19.0 0.3 224 chr2R 9945419 intron Mef2 - chr2R 9945531 intron Mef2 - chr2R 9945643 intron Mef2 - chr2R_6_9945001 chr2R_9945001 RAL-304_100b 1205 chr2R 9945426 9945465 chr2R 9945631 9945686 BS 39 216 12.5 10.5 11.5 3.1 260 chr2R 9945426 intron Mef2 - chr2R 9945556 intron Mef2 - chr2R 9945686 intron Mef2 - chr2R_39_9945001 chr2R_9945001 RAL-304_100b 1206 chr2R 9954908 9954965 chr2R 9955015 9955043 58 102 15.0 18.0 16.5 3.3 135 chr2R 9954908 intron Mef2 - chr2R 9954976 intron Mef2 - chr2R 9955043 intron Mef2 - chr2R_58_9950001 chr2R_9950001 RAL-304_100b 1207 chr2R 9955267 9955279 chr2R 13776534 13776536 4 3821264 35.5 68.5 52.0 0.1 3821269 chr2R 9955267 intron Mef2 - chr2R 11865902 exon Damm - chr2R 13776536 intron Cpr50Ca + chr2R_4_11865001 chr2R_11865001 RAL-304_100b 1208 chr2R 10005533 10005584 chr2R 10005666 10005710 34 130 10.0 14.0 12.0 2.6 177 chr2R 10005533 intron Pka-R2 - chr2R 10005622 intron Pka-R2 - chr2R 10005710 intron Pka-R2 - chr2R_34_10005001 chr2R_10005001 RAL-304_100b 1209 chr2R 10005834 10005838 chr2R 10007018 10007018 1360 7 1186 34.5 20.0 27.2 0.2 1184 chr2R 10005834 intron Pka-R2 - chr2R 10006426 intron Pka-R2 - chr2R 10007018 intron Pka-R2 - chr2R_7_10005001 chr2R_10005001 RAL-304_100b 1210 chr2R 10005841 10005880 chr2R 10007014 10007040 1360 46 1177 16.0 16.5 16.2 2.7 1199 chr2R 10005841 intron Pka-R2 - chr2R 10006440 intron Pka-R2 - chr2R 10007040 intron Pka-R2 - chr2R_46_10005001 chr2R_10005001 RAL-304_100b 1211 chr2R 10008555 10008566 chr2R 10008658 10008669 6 101 4.5 0.5 2.5 1.7 114 chr2R 10008555 intron Pka-R2 - chr2R 10008612 intron Pka-R2 - chr2R 10008669 intron Pka-R2 - chr2R_6_10005001 chr2R_10005001 RAL-304_100b 1212 chr2R 10008568 10008575 chr2R 10008648 10008687 8 95 4.5 0.5 2.5 2.3 119 chr2R 10008568 intron Pka-R2 - chr2R 10008628 intron Pka-R2 - chr2R 10008687 intron Pka-R2 - chr2R_8_10005001 chr2R_10005001 RAL-304_100b 1213 chr2R 10008580 10008600 chr2R 10008647 10008713 9 105 2.5 0.5 1.5 3.6 133 chr2R 10008580 intron Pka-R2 - chr2R 10008646 intron Pka-R2 - chr2R 10008713 intron Pka-R2 - chr2R_9_10005001 chr2R_10005001 RAL-304_100b 1214 chr2R 10040881 10040931 chr2R 10040988 10041038 36 106 11.0 9.0 10.0 3.3 157 chr2R 10040881 intron oys - chr2R 10040960 intron oys - chr2R 10041038 intron oys - chr2R_36_10040001 chr2R_10040001 RAL-304_100b 1215 chr2R 10047792 10047834 chr2R 10047900 10047942 13 108 14.5 15.0 14.8 0.8 150 chr2R 10047792 intron oys - chr2R 10047867 intron oys - chr2R 10047942 intron oys - chr2R_13_10045001 chr2R_10045001 RAL-304_100b 1216 chr2R 10053497 10053549 chr2R 10053625 10053677 32 125 9.0 7.0 8.0 3.6 180 chr2R 10053497 intron magu + chr2R 10053587 intron magu + chr2R 10053677 intron magu + chr2R_32_10050001 chr2R_10050001 RAL-304_100b 1217 chr2R 10132164 10132219 chr2R 10132269 10132309 36 102 12.5 17.0 14.8 2.3 145 chr2R 10132164 intron gem + chr2R 10132236 intron gem + chr2R 10132309 exon gem + chr2R_36_10130001 chr2R_10130001 RAL-304_100b 1218 chr2R 10168333 10168362 chr2R 10168435 10168459 15 100 26.0 32.0 29.0 0.5 126 chr2R 10168333 intron KCNQ - chr2R 10168396 intron KCNQ - chr2R 10168459 intron KCNQ - chr2R_15_10165001 chr2R_10165001 RAL-304_100b 1219 chr2R 10172297 10172339 chr2R 10172833 10172873 18 532 11.5 1.0 6.2 2.5 576 chr2R 10172297 intron KCNQ - chr2R 10172585 intron KCNQ - chr2R 10172873 intron KCNQ - chr2R_18_10170001 chr2R_10170001 RAL-304_100b 1220 chr2R 10176861 10176912 chr2R 10186053 10186104 roo 22 9192 12.0 9.0 10.5 1.9 9243 chr2R 10176861 intron KCNQ - chr2R 10181482 intron KCNQ - chr2R 10186104 intron KCNQ - chr2R_22_10180001 chr2R_10180001 RAL-304_100b 1221 chr2R 10189178 10189234 chr2R 10189280 10189337 15 102 9.0 3.5 6.2 2.1 159 chr2R 10189178 intron KCNQ - chr2R 10189258 intron KCNQ - chr2R 10189337 intron KCNQ - chr2R_15_10185001 chr2R_10185001 RAL-304_100b 1222 chr2R 10221193 10221240 chr2R 10221320 10221372 25 128 6.0 8.0 7.0 3.1 179 chr2R 10221193 intron,intron CG12912 -,Hr46 - chr2R 10221282 intron,intron CG12912 -,Hr46 - chr2R 10221372 intron,intron CG12912 -,Hr46 - chr2R_25_10220001 chr2R_10220001 RAL-304_100b 1223 chr2R 10225708 10225752 chr2R 10225815 10225859 29 106 11.5 13.0 12.2 2.2 151 chr2R 10225708 intron,intron CG12912 -,Hr46 - chr2R 10225784 intron,intron CG12912 -,Hr46 - chr2R 10225859 intron,intron CG12912 -,Hr46 - chr2R_29_10225001 chr2R_10225001 RAL-304_100b 1224 chr2R 10234957 10234971 chr2R 10235071 10235085 5 114 22.5 0.0 11.2 0.4 128 chr2R 10234957 intron Hr46 - chr2R 10235021 intron Hr46 - chr2R 10235085 intron Hr46 - chr2R_5_10235001 chr2R_10235001 RAL-304_100b 1225 chr2R 10263166 10263213 chr2R 10263273 10263325 23 110 6.0 5.0 5.5 3.5 159 chr2R 10263166 3` UTR CR30009 - chr2R 10263246 3` UTR CR30009 - chr2R 10263325 3` UTR CR30009 - chr2R_23_10260001 chr2R_10260001 RAL-304_100b 1226 chr2R 10270544 10270600 chr2R 10270658 10270714 57 112 15.5 14.5 15.0 3.6 170 chr2R 10270544 intron CAP + chr2R 10270629 intron CAP + chr2R 10270714 intron CAP + chr2R_57_10270001 chr2R_10270001 RAL-304_100b 1227 chr2R 10290091 10290142 chr2R 10290197 10290248 34 105 8.0 10.5 9.2 3.3 157 chr2R 10290091 intron CAP + chr2R 10290170 intron CAP + chr2R 10290248 intron CAP + chr2R_34_10290001 chr2R_10290001 RAL-304_100b 1228 chr2R 10291847 10291857 chr2R 10291919 10291949 7 103 0.0 10.0 5.0 1.2 102 chr2R 10291847 intron CAP + chr2R 10291898 intron CAP + chr2R 10291949 intron CAP + chr2R_7_10290001 chr2R_10290001 RAL-304_100b 1229 chr2R 10366011 10366024 chr2R 10366114 10366127 11 102 47.0 25.5 36.2 0.3 116 chr2R 10366011 intron CG42732 - chr2R 10366069 intron CG42732 - chr2R 10366127 intron CG42732 - chr2R_11_10365001 chr2R_10365001 RAL-304_100b 1230 chr2R 10376122 10376138 chr2R 10376496 10376512 9 374 0.0 11.0 5.5 1.4 390 chr2R 10376122 intron CG42732 - chr2R 10376317 intron CG42732 - chr2R 10376512 intron CG42732 - chr2R_9_10375001 chr2R_10375001 RAL-304_100b 1231 chr2R 10409036 10409086 chr2R 10409138 10409185 26 101 0.0 9.5 4.8 4.5 149 chr2R 10409036 intron CG42732 - chr2R 10409110 intron CG42732 - chr2R 10409185 intron,exon CG42732 -,CG33477 - chr2R_26_10405001 chr2R_10405001 RAL-304_100b 1232 chr2R 10428994 10429052 chr2R 10429096 10429146 37 99 8.0 5.0 6.5 4.9 152 chr2R 10428994 intergenic not near genes chr2R 10429070 intergenic not near genes chr2R 10429146 intergenic not near genes chr2R_37_10425001 chr2R_10425001 RAL-304_100b 1233 chr2R 10454075 10454130 chr2R 10454177 10454232 45 99 17.5 13.5 15.5 2.7 157 chr2R 10454075 intron,intron Galphao +,Cyp49a1 - chr2R 10454154 intron,intron Galphao +,Cyp49a1 - chr2R 10454232 intron,intron Galphao +,Cyp49a1 - chr2R_45_10450001 chr2R_10450001 RAL-304_100b 1234 chr2R 10468996 10469054 chr2R 10469147 10469205 74 148 17.5 13.0 15.2 4.6 209 chr2R 10468996 intron CG11777 + chr2R 10469100 intron CG11777 + chr2R 10469205 exon CG11777 + chr2R_74_10465001 chr2R_10465001 RAL-304_100b 1235 chr2R 10478768 10478810 chr2R 10478869 10478875 19 99 18.5 10.0 14.2 1.2 107 chr2R 10478768 5` UTR CR45134 + chr2R 10478822 intergenic CR45134 +,trsn -,whd - chr2R 10478875 intergenic CR45134 +,trsn -,whd - chr2R_19_10475001 chr2R_10475001 RAL-304_100b 1236 chr2R 10509565 10509569 chr2R 10509676 10509681 5 112 41.0 6.5 23.8 0.2 116 chr2R 10509565 intron lola - chr2R 10509623 intron lola - chr2R 10509681 intron lola - chr2R_5_10505001 chr2R_10505001 RAL-304_100b 1237 chr2R 10562163 10562219 chr2R 10562276 10562331 38 110 14.0 7.0 10.5 3.3 168 chr2R 10562163 exon psq + chr2R 10562247 intron psq + chr2R 10562331 intron psq + chr2R_38_10560001 chr2R_10560001 RAL-304_100b 1238 chr2R 10563903 10563906 chr2R 10564119 10564122 4 216 0.0 20.5 10.2 0.4 219 chr2R 10563903 intron psq + chr2R 10564012 intron psq + chr2R 10564122 intron psq + chr2R_4_10560001 chr2R_10560001 RAL-304_100b 1239 chr2R 10563907 10563924 chr2R 10564117 10564140 11 214 0.0 18.0 9.0 1.1 233 chr2R 10563907 intron psq + chr2R 10564024 intron psq + chr2R 10564140 intron psq + chr2R_11_10560001 chr2R_10560001 RAL-304_100b 1240 chr2R 10574602 10574637 chr2R 10574709 10574744 13 106 19.0 16.0 17.5 0.7 142 chr2R 10574602 intron psq + chr2R 10574673 intron psq + chr2R 10574744 intron psq + chr2R_13_10570001 chr2R_10570001 RAL-304_100b 1241 chr2R 10585573 10585591 chr2R 10594178 10594184 Tirant 11 8605 12.5 19.5 16.0 0.6 8611 chr2R 10585573 intron psq + chr2R 10589878 intron psq + chr2R 10594184 intron psq + chr2R_11_10585001 chr2R_10585001 RAL-304_100b 1242 chr2R 10653178 10653235 chr2R 10653284 10653334 25 103 9.5 13.5 11.5 2.0 156 chr2R 10653178 intergenic not near genes chr2R 10653256 intergenic not near genes chr2R 10653334 intergenic not near genes chr2R_25_10650001 chr2R_10650001 RAL-304_100b 1243 chr2R 10668042 10668082 chr2R 10668143 10668174 34 94 18.0 35.5 26.8 1.2 132 chr2R 10668042 intergenic not near genes chr2R 10668108 intergenic not near genes chr2R 10668174 intergenic not near genes chr2R_34_10665001 chr2R_10665001 RAL-304_100b 1244 chr2R 10675354 10675404 chr2R 10675460 10675468 19 104 9.0 6.5 7.8 2.2 114 chr2R 10675354 intron stan + chr2R 10675411 intron stan + chr2R 10675468 intron stan + chr2R_19_10675001 chr2R_10675001 RAL-304_100b 1245 chr2R 10678464 10678479 chr2R 10678595 10678605 5 128 55.5 18.0 36.8 0.1 141 chr2R 10678464 intron stan + chr2R 10678534 intron stan + chr2R 10678605 intron stan + chr2R_5_10675001 chr2R_10675001 RAL-304_100b 1246 chr2R 10678480 10678520 chr2R 10678591 10678648 34 116 23.5 16.5 20.0 1.6 168 chr2R 10678480 intron stan + chr2R 10678564 intron stan + chr2R 10678648 intron stan + chr2R_34_10675001 chr2R_10675001 RAL-304_100b 1247 chr2R 10790121 10790176 chr2R 10790234 10790274 34 110 9.5 14.0 11.8 2.7 153 chr2R 10790121 intron CG33144 - chr2R 10790198 intron CG33144 - chr2R 10790274 intron CG33144 - chr2R_34_10790001 chr2R_10790001 RAL-304_100b 1248 chr2R 10794886 10794943 chr2R 10794989 10795046 44 101 10.5 12.0 11.2 3.6 160 chr2R 10794886 intron CG33144 - chr2R 10794966 intron CG33144 - chr2R 10795046 intron CG33144 - chr2R_44_10790001 chr2R_10790001 RAL-304_100b 1249 chr2R 10796682 10796732 chr2R 10796806 10796841 21 120 16.0 7.0 11.5 1.7 159 chr2R 10796682 intron CG33144 - chr2R 10796762 intron CG33144 - chr2R 10796841 intron CG33144 - chr2R_21_10795001 chr2R_10795001 RAL-304_100b 1250 chr2R 10834236 10834288 chr2R 10834683 10834735 49 453 115.5 138.5 127.0 0.4 499 chr2R 10834236 intron CG12344 - chr2R 10834486 intron CG12344 - chr2R 10834735 intron CG12344 - chr2R_49_10830001 chr2R_10830001 RAL-304_100b 1251 chr2R 10922767 10922788 chr2R 10922863 10922899 10 108 0.0 18.5 9.2 1.0 132 chr2R 10922767 intergenic not near genes chr2R 10922833 intergenic not near genes chr2R 10922899 intergenic not near genes chr2R_10_10920001 chr2R_10920001 RAL-304_100b 1252 chr2R 10947070 10947120 chr2R 10947182 10947222 8 108 15.5 0.0 7.8 0.9 152 chr2R 10947070 5` UTR CR45228 + chr2R 10947146 intergenic CR45228 + chr2R 10947222 intergenic CR45228 + chr2R_8_10945001 chr2R_10945001 RAL-304_100b 1253 chr2R 10948021 10948024 chr2R 10955582 10955600 17.6 6 7570 8.0 20.5 14.2 0.4 7579 chr2R 10948021 intergenic not near genes chr2R 10951810 intergenic not near genes chr2R 10955600 intergenic not near genes chr2R_6_10950001 chr2R_10950001 RAL-304_100b 1254 chr2R 10948026 10948032 chr2R 10955581 10955581 17.6 11 7567 9.0 20.0 14.5 0.7 7555 chr2R 10948026 intergenic not near genes chr2R 10951804 intergenic not near genes chr2R 10955581 intergenic not near genes chr2R_11_10950001 chr2R_10950001 RAL-304_100b 1255 chr2R 10948033 10948062 chr2R 10955576 10955626 17.6 31 7565 7.0 17.0 12.0 2.4 7593 chr2R 10948033 intergenic not near genes chr2R 10951830 intergenic not near genes chr2R 10955626 intergenic not near genes chr2R_31_10950001 chr2R_10950001 RAL-304_100b 1256 chr2R 10959065 10959106 chr2R 10959169 10959206 20 100 8.5 15.0 11.8 1.6 141 chr2R 10959065 intergenic not near genes chr2R 10959136 intergenic not near genes chr2R 10959206 intergenic not near genes chr2R_20_10955001 chr2R_10955001 RAL-304_100b 1257 chr2R 10979636 10979687 chr2R 10980126 10980156 297 27 487 11.5 10.5 11.0 2.2 520 chr2R 10979636 intergenic not near genes chr2R 10979896 intergenic not near genes chr2R 10980156 intergenic not near genes chr2R_27_10975001 chr2R_10975001 RAL-304_100b 1258 chr2R 10999242 10999269 chr2R 10999512 10999523 17 273 20.5 18.0 19.2 0.8 281 chr2R 10999242 intron luna - chr2R 10999382 intron luna - chr2R 10999523 intron luna - chr2R_17_10995001 chr2R_10995001 RAL-304_100b 1259 chr2R 11009795 11009847 chr2R 11018994 11019026 roo 29 9192 14.0 21.0 17.5 1.6 9231 chr2R 11009795 intron luna - chr2R 11014410 intron luna - chr2R 11019026 intron luna - chr2R_29_11010001 chr2R_11010001 RAL-304_100b 1260 chr2R 11019858 11019860 chr2R 11024948 11024951 jockey 6 5090 44.0 24.0 34.0 0.2 5093 chr2R 11019858 intron luna - chr2R 11022404 intron luna - chr2R 11024951 intron luna - chr2R_6_11020001 chr2R_11020001 RAL-304_100b 1261 chr2R 11019868 11019910 chr2R 11024944 11024950 jockey 44 5078 14.0 23.0 18.5 2.3 5082 chr2R 11019868 intron luna - chr2R 11022409 intron luna - chr2R 11024950 intron luna - chr2R_44_11020001 chr2R_11020001 RAL-304_100b 1262 chr2R 11050480 11050507 chr2R 11050576 11050608 10 100 12.5 13.5 13.0 0.7 128 chr2R 11050480 intron luna - chr2R 11050544 intron luna - chr2R 11050608 intron luna - chr2R_10_11050001 chr2R_11050001 RAL-304_100b 1263 chr2R 11050508 11050527 chr2R 11050569 11050628 6 94 8.5 10.5 9.5 0.6 120 chr2R 11050508 intron luna - chr2R 11050568 intron luna - chr2R 11050628 intron luna - chr2R_6_11050001 chr2R_11050001 RAL-304_100b 1264 chr2R 11064696 11064738 chr2R 11064794 11064846 33 106 8.0 11.5 9.8 3.1 150 chr2R 11064696 intron luna - chr2R 11064771 intron luna - chr2R 11064846 intron luna - chr2R_33_11060001 chr2R_11060001 RAL-304_100b 1265 chr2R 11071539 11071590 chr2R 11071669 11071670 47 126 11.5 0.5 6.0 6.7 131 chr2R 11071539 intron luna - chr2R 11071604 intron luna - chr2R 11071670 intron luna - chr2R_47_11070001 chr2R_11070001 RAL-304_100b 1266 chr2R 11097336 11097388 chr2R 11097463 11097480 50 126 9.0 13.0 11.0 4.2 144 chr2R 11097336 intron luna - chr2R 11097408 intron luna - chr2R 11097480 intron luna - chr2R_50_11095001 chr2R_11095001 RAL-304_100b 1267 chr2R 11115271 11115288 chr2R 11115356 11115374 9 94 38.0 55.5 46.8 0.2 103 chr2R 11115271 intron luna - chr2R 11115322 intron luna - chr2R 11115374 intron luna - chr2R_9_11115001 chr2R_11115001 RAL-304_100b 1268 chr2R 11129798 11129848 chr2R 11129899 11129955 32 103 12.5 13.5 13.0 2.3 157 chr2R 11129798 intergenic not near genes chr2R 11129876 intergenic not near genes chr2R 11129955 intergenic not near genes chr2R_32_11125001 chr2R_11125001 RAL-304_100b 1269 chr2R 11158843 11158852 chr2R 11159037 11159046 6 194 16.0 8.5 12.2 0.5 203 chr2R 11158843 intron CG13229 - chr2R 11158944 intron CG13229 - chr2R 11159046 intron CG13229 - chr2R_6_11155001 chr2R_11155001 RAL-304_100b 1270 chr2R 11158854 11158894 chr2R 11159032 11159088 16 191 5.5 7.5 6.5 2.1 234 chr2R 11158854 intron CG13229 - chr2R 11158971 intron CG13229 - chr2R 11159088 intron,5` UTR CG13229 -,shn + chr2R_16_11155001 chr2R_11155001 RAL-304_100b 1271 chr2R 11161636 11161653 chr2R 11161801 11161818 9 163 11.0 7.0 9.0 0.9 182 chr2R 11161636 intron,intron CG13229 -,shn + chr2R 11161727 intron,intron CG13229 -,shn + chr2R 11161818 intron,intron CG13229 -,shn + chr2R_9_11160001 chr2R_11160001 RAL-304_100b 1272 chr2R 11179243 11179288 chr2R 11179354 11179369 50 108 18.5 26.5 22.5 2.1 126 chr2R 11179243 intron shn + chr2R 11179306 intron shn + chr2R 11179369 intron shn + chr2R_50_11175001 chr2R_11175001 RAL-304_100b 1273 chr2R 11207790 11207847 chr2R 11208006 11208028 BS 44 212 20.0 11.5 15.8 2.6 238 chr2R 11207790 intron shn + chr2R 11207909 intron shn + chr2R 11208028 intron shn + chr2R_44_11205001 chr2R_11205001 RAL-304_100b 1274 chr2R 11224087 11224253 chr2R 11224407 11224456 4 262 0.0 4.5 2.2 1.2 369 chr2R 11224087 intron CG7737 + chr2R 11224272 intron CG7737 + chr2R 11224456 intron CG7737 + chr2R_4_11220001 chr2R_11220001 RAL-304_100b 1275 chr2R 11248203 11248260 chr2R 11248306 11248332 37 90 13.0 16.5 14.8 2.3 129 chr2R 11248203 exon CG34227 + chr2R 11248268 exon CG34227 + chr2R 11248332 exon CG34227 + chr2R_37_11245001 chr2R_11245001 RAL-304_100b 1276 chr2R 11249150 11249202 chr2R 11249296 11249351 12 148 8.5 0.0 4.2 2.3 201 chr2R 11249150 intergenic CG43112 + chr2R 11249250 intergenic CG43112 + chr2R 11249351 intergenic CG43112 + chr2R_12_11245001 chr2R_11245001 RAL-304_100b 1277 chr2R 11263829 11263840 chr2R 11263970 11263981 5 141 0.0 23.5 11.8 0.4 152 chr2R 11263829 intergenic not near genes chr2R 11263905 intergenic not near genes chr2R 11263981 intergenic not near genes chr2R_5_11260001 chr2R_11260001 RAL-304_100b 1278 chr2R 11297600 11297612 chr2R 11301944 11301958 flea 4 4346 42.5 17.5 30.0 0.1 4358 chr2R 11297600 intergenic CG42336 - chr2R 11299779 intergenic not near genes chr2R 11301958 5` UTR CG7741 + chr2R_4_11295001 chr2R_11295001 RAL-304_100b 1279 chr2R 11297615 11297616 chr2R 11301940 11301954 flea 6 4335 38.5 16.5 27.5 0.2 4339 chr2R 11297615 intergenic CG42336 - chr2R 11299784 intergenic not near genes chr2R 11301954 5` UTR CG7741 + chr2R_6_11295001 chr2R_11295001 RAL-304_100b 1280 chr2R 11297617 11297650 chr2R 11301938 11301967 flea 22 4338 17.5 15.5 16.5 1.3 4350 chr2R 11297617 intergenic CG42336 - chr2R 11299792 intergenic not near genes chr2R 11301967 5` UTR CG7741 + chr2R_22_11295001 chr2R_11295001 RAL-304_100b 1281 chr2R 11344147 11344154 chr2R 11344253 11344275 9 116 0.0 26.0 13.0 0.6 128 chr2R 11344147 intergenic alphaTry - chr2R 11344211 intergenic alphaTry - chr2R 11344275 3` UTR alphaTry - chr2R_9_11340001 chr2R_11340001 RAL-304_100b 1282 chr2R 11344155 11344157 chr2R 11344246 11344278 4 114 0.0 18.5 9.2 0.4 123 chr2R 11344155 intergenic alphaTry - chr2R 11344216 intergenic alphaTry - chr2R 11344278 3` UTR alphaTry - chr2R_4_11340001 chr2R_11340001 RAL-304_100b 1283 chr2R 11344158 11344180 chr2R 11344243 11344272 4 96 0.0 16.5 8.2 0.4 114 chr2R 11344158 intergenic alphaTry - chr2R 11344215 intergenic alphaTry - chr2R 11344272 3` UTR alphaTry - chr2R_4_11340001 chr2R_11340001 RAL-304_100b 1284 chr2R 11406748 11406752 chr2R 11406849 11406853 6 101 13.5 44.0 28.8 0.2 105 chr2R 11406748 exon CG7759 + chr2R 11406800 intron CG7759 + chr2R 11406853 exon CG7759 + chr2R_6_11405001 chr2R_11405001 RAL-304_100b 1285 chr2R 11415402 11415463 chr2R 11415503 11415534 32 84 9.0 2.5 5.8 4.7 132 chr2R 11415402 intron,3` UTR Drip -,CG7763 + chr2R 11415468 intron Drip - chr2R 11415534 intron Drip - chr2R_32_11415001 chr2R_11415001 RAL-304_100b 1286 chr2R 11415513 11415526 chr2R 11418675 11418697 opus 9 3168 2.0 19.0 10.5 0.8 3184 chr2R 11415513 intron Drip - chr2R 11417105 intron Drip - chr2R 11418697 intron Drip - chr2R_9_11415001 chr2R_11415001 RAL-304_100b 1287 chr2R 11415527 11415550 chr2R 11418666 11418724 opus 31 3168 1.5 13.5 7.5 3.6 3197 chr2R 11415527 intron Drip - chr2R 11417126 intron Drip - chr2R 11418724 intron Drip - chr2R_31_11415001 chr2R_11415001 RAL-304_100b 1288 chr2R 11421644 11421695 chr2R 11421749 11421792 31 104 11.5 11.0 11.2 2.5 148 chr2R 11421644 intron Drip - chr2R 11421718 intron Drip - chr2R 11421792 intron Drip - chr2R_31_11420001 chr2R_11420001 RAL-304_100b 1289 chr2R 1320201 1320201 chr2R 11463556 11463556 invader1 4 10143355 67.0 43.5 55.2 0.1 10143355 chr2R 1320201 intergenic not near genes chr2R 6391878 intergenic not near genes chr2R 11463556 3` UTR E(Pc) + chr2R_4_6390001 chr2R_6390001 RAL-304_100b 1290 chr2R 11472624 11472679 chr2R 11473846 11473901 pogo 26 1219 13.5 10.5 12.0 2.0 1277 chr2R 11472624 intergenic not near genes chr2R 11473262 intergenic not near genes chr2R 11473901 intergenic not near genes chr2R_26_11470001 chr2R_11470001 RAL-304_100b 1291 chr2R 11480778 11480831 chr2R 11480896 11480939 8 117 0.0 10.0 5.0 1.3 161 chr2R 11480778 intron inv + chr2R 11480858 intron inv + chr2R 11480939 intron inv + chr2R_8_11480001 chr2R_11480001 RAL-304_100b 1292 chr2R 11631373 11631410 chr2R 11631478 11631509 24 103 1.0 9.5 5.2 3.9 136 chr2R 11631373 intron CG9005 - chr2R 11631441 intron CG9005 - chr2R 11631509 intron CG9005 - chr2R_24_11630001 chr2R_11630001 RAL-304_100b 1293 chr2R 11677860 11677895 chr2R 11677949 11677998 38 95 15.5 12.0 13.8 2.6 138 chr2R 11677860 intron,exon Roc2 -,Tret1-2 + chr2R 11677929 intron,3` UTR Roc2 -,Tret1-2 + chr2R 11677998 intron,3` UTR Roc2 -,Tret1-2 + chr2R_38_11675001 chr2R_11675001 RAL-304_100b 1294 chr2R 11724131 11724185 chr2R 11724241 11724298 21 109 4.0 8.0 6.0 3.0 167 chr2R 11724131 intron pyr + chr2R 11724214 intron pyr + chr2R 11724298 exon pyr + chr2R_21_11720001 chr2R_11720001 RAL-304_100b 1295 chr2R 11803150 11803171 chr2R 11803243 11803265 11 107 3.0 8.0 5.5 1.7 115 chr2R 11803150 intron ths + chr2R 11803208 intron ths + chr2R 11803265 intron ths + chr2R_11_11800001 chr2R_11800001 RAL-304_100b 1296 chr2R 11922715 11922723 chr2R 11922819 11922827 4 104 33.0 6.5 19.8 0.2 112 chr2R 11922715 intergenic not near genes chr2R 11922771 intergenic not near genes chr2R 11922827 intergenic not near genes chr2R_4_11920001 chr2R_11920001 RAL-304_100b 1297 chr2R 11922724 11922772 chr2R 11922816 11922874 39 101 10.5 8.0 9.2 3.8 150 chr2R 11922724 intergenic not near genes chr2R 11922799 intergenic not near genes chr2R 11922874 intergenic not near genes chr2R_39_11920001 chr2R_11920001 RAL-304_100b 1298 chr2R 11928698 11928710 chr2R 11928801 11928813 11 103 0.0 24.5 12.2 0.8 115 chr2R 11928698 intergenic not near genes chr2R 11928756 intergenic CR44312 - chr2R 11928813 intergenic CR44312 - chr2R_11_11925001 chr2R_11925001 RAL-304_100b 1299 chr2R 11932291 11932330 chr2R 11932412 11932431 50 117 33.0 7.5 20.2 2.4 140 chr2R 11932291 intergenic not near genes chr2R 11932361 intergenic not near genes chr2R 11932431 intergenic not near genes chr2R_50_11930001 chr2R_11930001 RAL-304_100b 1300 chr2R 12044349 12044377 chr2R 12044444 12044487 12 107 8.0 10.0 9.0 1.2 138 chr2R 12044349 intergenic Drep-1 + chr2R 12044418 intergenic Drep-1 + chr2R 12044487 intergenic Drep-1 + chr2R_12_12040001 chr2R_12040001 RAL-304_100b 1301 chr2R 12093929 12093939 chr2R 12094066 12094077 6 138 27.5 9.5 18.5 0.3 148 chr2R 12093929 intron jeb - chr2R 12094003 intron jeb - chr2R 12094077 intron jeb - chr2R_6_12090001 chr2R_12090001 RAL-304_100b 1302 chr2R 12093940 12093981 chr2R 12094063 12094119 27 131 11.5 7.5 9.5 2.6 179 chr2R 12093940 intron jeb - chr2R 12094030 intron jeb - chr2R 12094119 intron jeb - chr2R_27_12090001 chr2R_12090001 RAL-304_100b 1303 chr2R 12104656 12104703 chr2R 12104759 12104795 61 100 23.5 29.5 26.5 2.2 139 chr2R 12104656 intron jeb - chr2R 12104726 intron jeb - chr2R 12104795 intron jeb - chr2R_61_12100001 chr2R_12100001 RAL-304_100b 1304 chr2R 12178898 12178917 chr2R 12179003 12179020 8 105 18.5 4.0 11.2 0.7 122 chr2R 12178898 intergenic CR45264 +,EndoG - chr2R 12178959 intergenic CR45264 +,EndoG - chr2R 12179020 5` UTR CR45264 + chr2R_8_12175001 chr2R_12175001 RAL-304_100b 1305 chr2R 12178918 12178930 chr2R 12179002 12179025 4 92 14.0 3.5 8.8 0.4 107 chr2R 12178918 intergenic CR45264 +,EndoG - chr2R 12178972 intergenic CR45264 +,EndoG - chr2R 12179025 5` UTR CR45264 + chr2R_4_12175001 chr2R_12175001 RAL-304_100b 1306 chr2R 12185975 12186037 chr2R 12186095 12186131 43 115 11.0 15.0 13.0 3.1 156 chr2R 12185975 intron Cyp6g1 + chr2R 12186053 intron Cyp6g1 + chr2R 12186131 intron Cyp6g1 + chr2R_43_12185001 chr2R_12185001 RAL-304_100b 1307 chr2R 12185222 12185244 chr2R 12188124 12188144 18 2901 112.0 404.0 258.0 0.1 2922 chr2R 12185222 3` UTR,exon CG13175 +,CG33964 + chr2R 12186683 exon Cyp6g1 + chr2R 12188144 3` UTR Cyp6g1 + chr2R_18_12185001 chr2R_12185001 RAL-304_100b 1308 chr2R 12187477 12187478 chr2R 12190068 12190069 4 2591 312.0 364.5 338.2 0.0 2592 chr2R 12187477 exon Cyp6g1 + chr2R 12188773 exon Cyp6g2 - chr2R 12190069 exon Cyp6g2 - chr2R_4_12185001 chr2R_12185001 RAL-304_100b 1309 chr2R 12187476 12187487 chr2R 12190071 12190078 17 2593 347.5 355.5 351.5 0.0 2602 chr2R 12187476 exon Cyp6g1 + chr2R 12188777 exon Cyp6g2 - chr2R 12190078 exon Cyp6g2 - chr2R_17_12185001 chr2R_12185001 RAL-304_100b 1310 chr2R 12187473 12187506 chr2R 12190079 12190097 82 2600 402.0 335.5 368.8 0.2 2624 chr2R 12187473 exon Cyp6g1 + chr2R 12188785 exon Cyp6g2 - chr2R 12190097 exon Cyp6g2 - chr2R_82_12185001 chr2R_12185001 RAL-304_100b 1311 chr2R 12187472 12187493 chr2R 12190098 12190124 143 2606 368.0 287.0 327.5 0.4 2652 chr2R 12187472 exon Cyp6g1 + chr2R 12188798 exon Cyp6g2 - chr2R 12190124 exon Cyp6g2 - chr2R_143_12185001 chr2R_12185001 RAL-304_100b 1312 chr2R 12272298 12272301 chr2R 12272406 12272408 4 108 33.0 13.0 23.0 0.2 110 chr2R 12272298 intron Cam + chr2R 12272353 intron Cam + chr2R 12272408 intron Cam + chr2R_4_12270001 chr2R_12270001 RAL-304_100b 1313 chr2R 12272302 12272356 chr2R 12272405 12272463 44 105 5.5 13.0 9.2 4.3 161 chr2R 12272302 intron Cam + chr2R 12272382 intron Cam + chr2R 12272463 intron Cam + chr2R_44_12270001 chr2R_12270001 RAL-304_100b 1314 chr2R 12284291 12284329 chr2R 12284385 12284432 15 104 0.0 13.5 6.8 1.9 141 chr2R 12284291 intron CG42700 + chr2R 12284362 intron CG42700 + chr2R 12284432 intron CG42700 + chr2R_15_12280001 chr2R_12280001 RAL-304_100b 1315 chr2R 12481140 12481145 chr2R 12482947 12482952 roo 10 1814 21.5 22.0 21.8 0.4 1812 chr2R 12481140 exon Dh44-R2 + chr2R 12482046 intron Dh44-R2 + chr2R 12482952 intron Dh44-R2 + chr2R_10_12480001 chr2R_12480001 RAL-304_100b 1316 chr2R 12481146 12481170 chr2R 12482946 12482968 roo 31 1817 11.0 21.5 16.2 1.8 1822 chr2R 12481146 exon Dh44-R2 + chr2R 12482057 intron Dh44-R2 + chr2R 12482968 intron Dh44-R2 + chr2R_31_12480001 chr2R_12480001 RAL-304_100b 1317 chr2R 12501683 12501686 chr2R 12503861 12503873 Rt1c 5 2185 50.0 21.5 35.8 0.1 2190 chr2R 12501683 intron fdl - chr2R 12502778 intron fdl - chr2R 12503873 intron fdl - chr2R_5_12500001 chr2R_12500001 RAL-304_100b 1318 chr2R 12501687 12501694 chr2R 12503859 12503876 Rt1c 6 2180 45.0 20.5 32.8 0.2 2189 chr2R 12501687 intron fdl - chr2R 12502782 intron fdl - chr2R 12503876 intron fdl - chr2R_6_12500001 chr2R_12500001 RAL-304_100b 1319 chr2R 12501696 12501721 chr2R 12503853 12503907 Rt1c 37 2178 27.5 18.5 23.0 1.5 2211 chr2R 12501696 intron fdl - chr2R 12502802 intron fdl - chr2R 12503907 intron fdl - chr2R_37_12500001 chr2R_12500001 RAL-304_100b 1320 chr2R 12501722 12501727 chr2R 12503848 12503870 Rt1c 6 2161 23.0 16.5 19.8 0.3 2148 chr2R 12501722 intron fdl - chr2R 12502796 intron fdl - chr2R 12503870 intron fdl - chr2R_6_12500001 chr2R_12500001 RAL-304_100b 1321 chr2R 12522064 12522111 chr2R 12522217 12522264 15 152 6.0 5.0 5.5 2.3 200 chr2R 12522064 exon CG33632 + chr2R 12522164 exon CG33632 + chr2R 12522264 exon CG33632 + chr2R_15_12520001 chr2R_12520001 RAL-304_100b 1322 chr2R 12535824 12535873 chr2R 12535920 12535958 63 92 25.5 17.5 21.5 2.8 134 chr2R 12535824 intron fra + chr2R 12535891 intron fra + chr2R 12535958 intron fra + chr2R_63_12535001 chr2R_12535001 RAL-304_100b 1323 chr2R 12540450 12540454 chr2R 12540558 12540562 4 108 54.0 10.5 32.2 0.1 112 chr2R 12540450 intron fra + chr2R 12540506 intron fra + chr2R 12540562 intron fra + chr2R_4_12540001 chr2R_12540001 RAL-304_100b 1324 chr2R 12540455 12540497 chr2R 12540557 12540605 45 100 24.0 10.0 17.0 2.5 150 chr2R 12540455 intron fra + chr2R 12540530 intron fra + chr2R 12540605 intron fra + chr2R_45_12540001 chr2R_12540001 RAL-304_100b 1325 chr2R 12565543 12565548 chr2R 12565946 12565951 4 403 0.0 15.0 7.5 0.5 408 chr2R 12565543 intergenic not near genes chr2R 12565747 intergenic Cyp301a1 + chr2R 12565951 intergenic Cyp301a1 + chr2R_4_12565001 chr2R_12565001 RAL-304_100b 1326 chr2R 12565550 12565596 chr2R 12565943 12565970 14 375 0.0 12.5 6.2 1.9 420 chr2R 12565550 intergenic not near genes chr2R 12565760 intergenic Cyp301a1 + chr2R 12565970 intergenic Cyp301a1 + chr2R_14_12565001 chr2R_12565001 RAL-304_100b 1327 chr2R 12670572 12670607 chr2R 12670671 12670717 9 109 0.0 8.5 4.2 1.7 145 chr2R 12670572 3` UTR CG42708 - chr2R 12670644 3` UTR CG42708 - chr2R 12670717 3` UTR CG42708 - chr2R_9_12670001 chr2R_12670001 RAL-304_100b 1328 chr2R 12677378 12677408 chr2R 12677487 12677517 25 107 0.0 16.5 8.2 2.7 139 chr2R 12677378 intron CG42708 - chr2R 12677448 intron CG42708 - chr2R 12677517 intron CG42708 - chr2R_25_12675001 chr2R_12675001 RAL-304_100b 1329 chr2R 12707492 12707546 chr2R 12715883 12715936 roo 22 8389 8.0 4.0 6.0 3.1 8444 chr2R 12707492 intron CG42663 + chr2R 12711714 intron CG42663 + chr2R 12715936 intron CG42663 + chr2R_22_12710001 chr2R_12710001 RAL-304_100b 1330 chr2R 12771300 12771357 chr2R 12771434 12771484 34 131 6.5 19.0 12.8 2.5 184 chr2R 12771300 intergenic not near genes chr2R 12771392 intergenic not near genes chr2R 12771484 intergenic not near genes chr2R_34_12770001 chr2R_12770001 RAL-304_100b 1331 chr2R 12771751 12771757 chr2R 12771885 12771891 4 134 32.5 36.0 34.2 0.1 140 chr2R 12771751 intergenic not near genes chr2R 12771821 intergenic not near genes chr2R 12771891 intergenic not near genes chr2R_4_12770001 chr2R_12770001 RAL-304_100b 1332 chr2R 12772759 12772798 chr2R 12772871 12772910 22 111 1.5 0.0 0.8 12.2 151 chr2R 12772759 intergenic not near genes chr2R 12772834 intergenic not near genes chr2R 12772910 intergenic not near genes chr2R_22_12770001 chr2R_12770001 RAL-304_100b 1333 chr2R 12774225 12774257 chr2R 12774329 12774341 5 101 16.5 0.5 8.5 0.5 116 chr2R 12774225 intergenic not near genes chr2R 12774283 intergenic not near genes chr2R 12774341 intergenic not near genes chr2R_5_12770001 chr2R_12770001 RAL-304_100b 1334 chr2R 12777776 12777827 chr2R 12777906 12777961 4 132 0.0 2.5 1.2 1.8 185 chr2R 12777776 5` UTR CR45266 + chr2R 12777868 5` UTR CR45266 + chr2R 12777961 5` UTR CR45266 + chr2R_4_12775001 chr2R_12775001 RAL-304_100b 1335 chr2R 12789276 12789319 chr2R 12797658 12797694 roo 38 8381 15.5 17.0 16.2 2.2 8418 chr2R 12789276 intron,3` UTR sca +,CR45137 - chr2R 12793485 intron,intron sca +,CR45137 - chr2R 12797694 intron,3` UTR sca +,CR45137 - chr2R_38_12790001 chr2R_12790001 RAL-304_100b 1336 chr2R 12789320 12789328 chr2R 12797656 12797700 roo 9 8375 12.0 15.5 13.8 0.6 8380 chr2R 12789320 intron,3` UTR sca +,CR45137 - chr2R 12793510 intron,intron sca +,CR45137 - chr2R 12797700 intron,3` UTR sca +,CR45137 - chr2R_9_12790001 chr2R_12790001 RAL-304_100b 1337 chr2R 12818349 12818354 chr2R 12818458 12818458 4 108 0.0 0.0 0.0 4.0 109 chr2R 12818349 intergenic not near genes chr2R 12818404 intergenic not near genes chr2R 12818458 intergenic not near genes chr2R_4_12815001 chr2R_12815001 RAL-304_100b 1338 chr2R 12819427 12819479 chr2R 12824525 12824557 jockey 71 5093 22.0 35.5 28.8 2.4 5130 chr2R 12819427 intergenic not near genes chr2R 12821992 intergenic not near genes chr2R 12824557 intergenic not near genes chr2R_71_12820001 chr2R_12820001 RAL-304_100b 1339 chr2R 12907599 12907606 chr2R 12907715 12907718 6 114 21.5 48.5 35.0 0.2 119 chr2R 12907599 intergenic CR44461 + chr2R 12907658 intergenic CR44461 + chr2R 12907718 intergenic CR44461 + chr2R_6_12905001 chr2R_12905001 RAL-304_100b 1340 chr2R 12907608 12907620 chr2R 12907714 12907716 13 110 11.0 47.0 29.0 0.4 108 chr2R 12907608 intergenic CR44461 + chr2R 12907662 intergenic CR44461 + chr2R 12907716 intergenic CR44461 + chr2R_13_12905001 chr2R_12905001 RAL-304_100b 1341 chr2R 12952819 12952849 chr2R 12952928 12952957 12 108 0.0 7.5 3.8 2.5 138 chr2R 12952819 intergenic CG13321 + chr2R 12952888 intergenic CG13321 + chr2R 12952957 intergenic CG13321 + chr2R_12_12950001 chr2R_12950001 RAL-304_100b 1342 chr2R 12973406 12973449 chr2R 12973518 12973560 41 110 15.5 14.5 15.0 2.6 154 chr2R 12973406 intron Psc - chr2R 12973483 intron Psc - chr2R 12973560 intron Psc - chr2R_41_12970001 chr2R_12970001 RAL-304_100b 1343 chr2R 13034676 13034679 chr2R 13034781 13034782 4 104 0.0 0.0 0.0 4.0 106 chr2R 13034676 intergenic not near genes chr2R 13034729 intergenic not near genes chr2R 13034782 intergenic not near genes chr2R_4_13030001 chr2R_13030001 RAL-304_100b 1344 chr2R 13043028 13043062 chr2R 13043133 13043161 8 104 0.0 5.5 2.8 2.1 133 chr2R 13043028 intergenic not near genes chr2R 13043094 intergenic not near genes chr2R 13043161 intergenic not near genes chr2R_8_13040001 chr2R_13040001 RAL-304_100b 1345 chr2R 13136816 13136862 chr2R 13141639 13141685 Doc 50 4819 16.0 31.0 23.5 2.0 4869 chr2R 13136816 exon Cap-G + chr2R 13139250 intron Cap-G + chr2R 13141685 intron Cap-G + chr2R_50_13135001 chr2R_13135001 RAL-304_100b 1346 chr2R 13136863 13136865 chr2R 13141636 13141662 Doc 5 4799 14.0 29.0 21.5 0.2 4799 chr2R 13136863 intron Cap-G + chr2R 13139262 intron Cap-G + chr2R 13141662 intron Cap-G + chr2R_5_13135001 chr2R_13135001 RAL-304_100b 1347 chr2R 13218280 13218325 chr2R 13218387 13218406 21 104 11.0 0.0 5.5 3.2 126 chr2R 13218280 intron CG4630 - chr2R 13218343 intron CG4630 - chr2R 13218406 intron CG4630 - chr2R_21_13215001 chr2R_13215001 RAL-304_100b 1348 chr2R 13240999 13241030 chr2R 13241110 13241141 12 111 0.0 17.0 8.5 1.3 142 chr2R 13240999 3` UTR GstE14 + chr2R 13241070 intergenic GstE14 + chr2R 13241141 intergenic GstE14 + chr2R_12_13240001 chr2R_13240001 RAL-304_100b 1349 chr2R 13241031 13241052 chr2R 13241104 13241148 23 105 0.0 13.0 6.5 3.1 117 chr2R 13241031 intergenic GstE14 + chr2R 13241090 intergenic GstE14 + chr2R 13241148 intergenic GstE14 + chr2R_23_13240001 chr2R_13240001 RAL-304_100b 1350 chr2R 13267027 13267078 chr2R 13267145 13267202 44 121 11.0 13.0 12.0 3.4 175 chr2R 13267027 intergenic not near genes chr2R 13267114 intergenic not near genes chr2R 13267202 intergenic not near genes chr2R_44_13265001 chr2R_13265001 RAL-304_100b 1351 chr2R 13329435 13329492 chr2R 13329536 13329547 25 93 16.5 18.0 17.2 1.4 112 chr2R 13329435 3` UTR,3` UTR CR44206 -,mir-184 - chr2R 13329491 3` UTR,3` UTR CR44206 -,mir-184 - chr2R 13329547 3` UTR CR44206 - chr2R_25_13325001 chr2R_13325001 RAL-304_100b 1352 chr2R 13364682 13364731 chr2R 13364793 13364842 34 110 8.5 9.5 9.0 3.4 160 chr2R 13364682 intergenic not near genes chr2R 13364762 intergenic not near genes chr2R 13364842 intergenic not near genes chr2R_34_13360001 chr2R_13360001 RAL-304_100b 1353 chr2R 13376629 13376639 chr2R 13376764 13376774 10 134 11.5 19.0 15.2 0.6 145 chr2R 13376629 intron CG10814 - chr2R 13376702 intron CG10814 - chr2R 13376774 intron CG10814 - chr2R_10_13375001 chr2R_13375001 RAL-304_100b 1354 chr2R 13403899 13403937 chr2R 13404009 13404012 24 104 8.5 4.0 6.2 3.3 113 chr2R 13403899 intergenic not near genes chr2R 13403956 intergenic not near genes chr2R 13404012 intergenic not near genes chr2R_24_13400001 chr2R_13400001 RAL-304_100b 1355 chr2R 13431465 13431518 chr2R 13431569 13431585 30 100 9.5 9.0 9.2 2.9 120 chr2R 13431465 intron CG42321 - chr2R 13431525 intron CG42321 - chr2R 13431585 intron CG42321 - chr2R_30_13430001 chr2R_13430001 RAL-304_100b 1356 chr2R 13438862 13438921 chr2R 13440160 13440214 41 1300 60.5 120.5 90.5 0.4 1352 chr2R 13438862 5` UTR CG42321 - chr2R 13439538 3` UTR cnn - chr2R 13440214 exon cnn - chr2R_41_13435001 chr2R_13435001 RAL-304_100b 1357 chr2R 13464450 13464500 chr2R 13464606 13464656 44 153 14.0 13.0 13.5 3.0 206 chr2R 13464450 intron arr - chr2R 13464553 intron arr - chr2R 13464656 intron arr - chr2R_44_13460001 chr2R_13460001 RAL-304_100b 1358 chr2R 13522086 13522108 chr2R 13522187 13522187 6 97 23.5 2.5 13.0 0.4 101 chr2R 13522086 intron,exon Vmat -,CG13331 + chr2R 13522136 intron,intron Vmat -,CG13331 + chr2R 13522187 intron,intron Vmat -,CG13331 + chr2R_6_13520001 chr2R_13520001 RAL-304_100b 1359 chr2R 13532495 13532528 chr2R 13532636 13532669 20 140 6.5 10.5 8.5 2.1 174 chr2R 13532495 intron Vmat - chr2R 13532582 intron Vmat - chr2R 13532669 intron Vmat - chr2R_20_13530001 chr2R_13530001 RAL-304_100b 1360 chr2R 13540383 13540421 chr2R 13540650 13540696 20 270 2.0 16.5 9.2 2.0 313 chr2R 13540383 intron CG6145 - chr2R 13540540 intron CG6145 - chr2R 13540696 intron CG6145 - chr2R_20_13540001 chr2R_13540001 RAL-304_100b 1361 chr2R 13554766 13554774 chr2R 13554861 13554884 14 106 0.0 32.5 16.2 0.8 118 chr2R 13554766 intron Roe1 + chr2R 13554825 intron Roe1 + chr2R 13554884 intron Roe1 + chr2R_14_13550001 chr2R_13550001 RAL-304_100b 1362 chr2R 13568161 13568194 chr2R 13568259 13568300 11 101 8.0 4.5 6.2 1.5 139 chr2R 13568161 intergenic not near genes chr2R 13568230 intergenic not near genes chr2R 13568300 intergenic not near genes chr2R_11_13565001 chr2R_13565001 RAL-304_100b 1363 chr2R 13580477 13580491 chr2R 13580852 13580855 jockey 12 373 31.0 15.0 23.0 0.5 378 chr2R 13580477 3` UTR CG6191 - chr2R 13580666 3` UTR,3` UTR CG6191 -,CG45088 - chr2R 13580855 3` UTR,3` UTR CG6191 -,CG45088 - chr2R_12_13580001 chr2R_13580001 RAL-304_100b 1364 chr2R 13580492 13580530 chr2R 13580846 13580870 jockey 44 368 17.0 13.0 15.0 2.8 378 chr2R 13580492 3` UTR CG6191 - chr2R 13580681 3` UTR,3` UTR CG6191 -,CG45088 - chr2R 13580870 3` UTR,3` UTR CG6191 -,CG45088 - chr2R_44_13580001 chr2R_13580001 RAL-304_100b 1365 chr2R 13601509 13601539 chr2R 13601611 13601626 14 99 26.5 26.0 26.2 0.5 117 chr2R 13601509 intergenic CG43058 - chr2R 13601568 intergenic CG43058 - chr2R 13601626 intergenic not near genes chr2R_14_13600001 chr2R_13600001 RAL-304_100b 1366 chr2R 13608253 13608300 chr2R 13608357 13608409 54 105 21.5 21.5 21.5 2.4 156 chr2R 13608253 intergenic CG12464 - chr2R 13608331 intergenic CG12464 - chr2R 13608409 intergenic CG12464 - chr2R_54_13605001 chr2R_13605001 RAL-304_100b 1367 chr2R 13645972 13645983 chr2R 13646035 13646062 7 89 4.5 16.0 10.2 0.6 90 chr2R 13645972 intron fas + chr2R 13646017 intron fas + chr2R 13646062 intron fas + chr2R_7_13645001 chr2R_13645001 RAL-304_100b 1368 chr2R 13650011 13650033 chr2R 13650118 13650149 7 113 5.5 13.5 9.5 0.7 138 chr2R 13650011 intron fas + chr2R 13650080 intron fas + chr2R 13650149 intron fas + chr2R_7_13650001 chr2R_13650001 RAL-304_100b 1369 chr2R 13677855 13677857 chr2R 13677911 13677962 4 88 16.0 18.5 17.2 0.2 107 chr2R 13677855 intron fas + chr2R 13677908 intron fas + chr2R 13677962 intron fas + chr2R_4_13675001 chr2R_13675001 RAL-304_100b 1370 chr2R 13709821 13709854 chr2R 13709939 13709972 18 114 9.0 18.0 13.5 1.2 151 chr2R 13709821 intron fas + chr2R 13709896 intron fas + chr2R 13709972 intron fas + chr2R_18_13705001 chr2R_13705001 RAL-304_100b 1371 chr2R 13721183 13721229 chr2R 13721286 13721337 40 100 30.5 17.0 23.8 1.6 154 chr2R 13721183 intron fas + chr2R 13721260 intron fas + chr2R 13721337 intron fas + chr2R_40_13720001 chr2R_13720001 RAL-304_100b 1372 chr2R 13728110 13728130 chr2R 13735792 13735812 opus 11 7682 20.0 7.0 13.5 0.8 7702 chr2R 13728110 intron fas + chr2R 13731961 intron fas + chr2R 13735812 intron fas + chr2R_11_13730001 chr2R_13730001 RAL-304_100b 1373 chr2R 13728132 13728162 chr2R 13735789 13735843 opus 14 7673 9.5 6.0 7.8 1.6 7711 chr2R 13728132 intron fas + chr2R 13731988 intron fas + chr2R 13735843 intron fas + chr2R_14_13730001 chr2R_13730001 RAL-304_100b 1374 chr2R 13768956 13769010 chr2R 13769080 13769128 56 120 20.0 17.0 18.5 2.9 172 chr2R 13768956 intergenic not near genes chr2R 13769042 intergenic not near genes chr2R 13769128 intergenic not near genes chr2R_56_13765001 chr2R_13765001 RAL-304_100b 1375 chr2R 13770514 13770526 chr2R 13770629 13770641 5 115 0.0 3.5 1.8 1.8 127 chr2R 13770514 intron Cpr50Ca + chr2R 13770578 intron Cpr50Ca + chr2R 13770641 intron Cpr50Ca + chr2R_5_13770001 chr2R_13770001 RAL-304_100b 1376 chr2R 13854924 13854980 chr2R 13855234 13855290 57 306 12.0 16.5 14.2 3.8 366 chr2R 13854924 intron,5` UTR CG6553 -,CR44367 + chr2R 13855107 exon,5` UTR CG6553 -,CR44367 + chr2R 13855290 exon,5` UTR CG6553 -,CR44367 + chr2R_57_13855001 chr2R_13855001 RAL-304_100b 1377 chr2R 13905584 13905630 chr2R 13907591 13907631 Rt1a 42 1999 24.5 31.0 27.8 1.5 2047 chr2R 13905584 intron shot - chr2R 13906608 intron shot - chr2R 13907631 intron shot - chr2R_42_13905001 chr2R_13905001 RAL-304_100b 1378 chr2R 13925823 13925872 chr2R 13926024 13926073 42 201 11.0 12.0 11.5 3.4 250 chr2R 13925823 intron shot - chr2R 13925948 intron shot - chr2R 13926073 intron shot - chr2R_42_13925001 chr2R_13925001 RAL-304_100b 1379 chr2R 13995237 13995240 chr2R 13995319 13995352 5 106 0.0 22.0 11.0 0.4 115 chr2R 13995237 intron mam + chr2R 13995294 intron mam + chr2R 13995352 intron mam + chr2R_5_13995001 chr2R_13995001 RAL-304_100b 1380 chr2R 14000208 14000218 chr2R 14000461 14000471 12 252 22.5 13.0 17.8 0.6 263 chr2R 14000208 intron mam + chr2R 14000340 intron mam + chr2R 14000471 intron mam + chr2R_12_14000001 chr2R_14000001 RAL-304_100b 1381 chr2R 14000219 14000262 chr2R 14000457 14000515 28 251 8.0 9.0 8.5 2.9 296 chr2R 14000219 intron mam + chr2R 14000367 intron mam + chr2R 14000515 intron mam + chr2R_28_14000001 chr2R_14000001 RAL-304_100b 1382 chr2R 14018135 14018188 chr2R 14018244 14018297 32 107 5.0 8.5 6.8 4.1 162 chr2R 14018135 intron mam + chr2R 14018216 intron mam + chr2R 14018297 intron mam + chr2R_32_14015001 chr2R_14015001 RAL-304_100b 1383 chr2R 14033605 14033665 chr2R 14033712 14033772 60 105 14.5 10.5 12.5 4.4 167 chr2R 14033605 intron mam + chr2R 14033688 intron mam + chr2R 14033772 intron mam + chr2R_60_14030001 chr2R_14030001 RAL-304_100b 1384 chr2R 14037239 14037299 chr2R 14037347 14037392 14 103 2.0 12.0 7.0 1.8 153 chr2R 14037239 intron mam + chr2R 14037316 intron mam + chr2R 14037392 intron mam + chr2R_14_14035001 chr2R_14035001 RAL-304_100b 1385 chr2R 14050828 14050855 chr2R 14050942 14050942 15 109 33.5 52.0 42.8 0.3 114 chr2R 14050828 intron mam + chr2R 14050885 intron mam + chr2R 14050942 intron mam + chr2R_15_14050001 chr2R_14050001 RAL-304_100b 1386 chr2R 14093407 14093420 chr2R 14109584 14109597 6 16177 16.5 7.5 12.0 0.5 16190 chr2R 14093407 intron Prosap - chr2R 14101502 intron Prosap - chr2R 14109597 intron Prosap - chr2R_6_14100001 chr2R_14100001 RAL-304_100b 1387 chr2R 14285031 14285049 chr2R 14285139 14285157 11 108 4.0 11.0 7.5 1.3 126 chr2R 14285031 intron Ih + chr2R 14285094 intron Ih + chr2R 14285157 intron Ih + chr2R_11_14285001 chr2R_14285001 RAL-304_100b 1388 chr2R 14306089 14306138 chr2R 14306190 14306234 17 97 10.0 6.5 8.2 1.8 145 chr2R 14306089 intergenic not near genes chr2R 14306162 intergenic not near genes chr2R 14306234 intergenic not near genes chr2R_17_14305001 chr2R_14305001 RAL-304_100b 1389 chr2R 14322738 14322745 chr2R 14322853 14322860 7 115 24.5 9.0 16.8 0.4 122 chr2R 14322738 intron Shroom + chr2R 14322799 intron Shroom + chr2R 14322860 intron Shroom + chr2R_7_14320001 chr2R_14320001 RAL-304_100b 1390 chr2R 14357530 14357577 chr2R 14357645 14357672 27 108 9.0 12.5 10.8 2.3 142 chr2R 14357530 intergenic CG8617 -,Arc1 - chr2R 14357601 intergenic CG8617 -,Arc1 - chr2R 14357672 intergenic Arc1 -,CG8617 - chr2R_27_14355001 chr2R_14355001 RAL-304_100b 1391 chr2R 14393841 14393858 chr2R 14393951 14393968 11 109 37.0 16.0 26.5 0.4 127 chr2R 14393841 intergenic not near genes chr2R 14393904 intergenic not near genes chr2R 14393968 intergenic not near genes chr2R_11_14390001 chr2R_14390001 RAL-304_100b 1392 chr2R 14393862 14393898 chr2R 14393949 14394008 37 105 10.5 15.0 12.8 2.7 146 chr2R 14393862 intergenic not near genes chr2R 14393935 intergenic not near genes chr2R 14394008 intergenic not near genes chr2R_37_14390001 chr2R_14390001 RAL-304_100b 1393 chr2R 14394209 14394223 chr2R 14399023 14399037 Doc 7 4814 32.5 9.5 21.0 0.3 4828 chr2R 14394209 intergenic not near genes chr2R 14396623 intergenic not near genes chr2R 14399037 intergenic not near genes chr2R_7_14395001 chr2R_14395001 RAL-304_100b 1394 chr2R 14400517 14400549 chr2R 14400621 14400644 12 99 9.5 10.5 10.0 1.1 127 chr2R 14400517 intergenic not near genes chr2R 14400580 intergenic not near genes chr2R 14400644 intergenic not near genes chr2R_12_14400001 chr2R_14400001 RAL-304_100b 1395 chr2R 14405397 14405449 chr2R 14405784 14405836 40 385 14.5 13.5 14.0 2.7 439 chr2R 14405397 intergenic not near genes chr2R 14405616 intergenic not near genes chr2R 14405836 intergenic not near genes chr2R_40_14405001 chr2R_14405001 RAL-304_100b 1396 chr2R 14438813 14438841 chr2R 14438922 14438950 28 108 34.0 12.0 23.0 1.2 137 chr2R 14438813 intron Oaz + chr2R 14438882 intron Oaz + chr2R 14438950 intron Oaz + chr2R_28_14435001 chr2R_14435001 RAL-304_100b 1397 chr2R 14438843 14438849 chr2R 14438921 14438958 12 94 32.0 11.5 21.8 0.5 115 chr2R 14438843 intron Oaz + chr2R 14438900 intron Oaz + chr2R 14438958 intron Oaz + chr2R_12_14435001 chr2R_14435001 RAL-304_100b 1398 chr2R 14443848 14443864 chr2R 14443963 14443979 18 114 9.5 15.5 12.5 1.3 131 chr2R 14443848 intron Oaz + chr2R 14443914 intron Oaz + chr2R 14443979 intron Oaz + chr2R_18_14440001 chr2R_14440001 RAL-304_100b 1399 chr2R 14446791 14446813 chr2R 14446909 14446931 15 116 43.5 17.0 30.2 0.5 140 chr2R 14446791 intron Oaz + chr2R 14446861 intron Oaz + chr2R 14446931 intron Oaz + chr2R_15_14445001 chr2R_14445001 RAL-304_100b 1400 chr2R 14453001 14453038 chr2R 14453116 14453153 10 115 4.5 0.0 2.2 3.1 152 chr2R 14453001 intron Oaz + chr2R 14453077 intron Oaz + chr2R 14453153 intron Oaz + chr2R_10_14450001 chr2R_14450001 RAL-304_100b 1401 chr2R 14467280 14467327 chr2R 14476463 14476509 roo 59 9179 10.0 17.5 13.8 4.0 9229 chr2R 14467280 intergenic not near genes chr2R 14471894 intergenic not near genes chr2R 14476509 5` UTR CR44462 + chr2R_59_14470001 chr2R_14470001 RAL-304_100b 1402 chr2R 14497364 14497387 chr2R 14498555 14498578 1360 16 1191 17.5 13.0 15.2 1.0 1214 chr2R 14497364 3` UTR Cpsf160 - chr2R 14497971 intron Cpsf160 - chr2R 14498578 3` UTR Cpsf160 - chr2R_16_14495001 chr2R_14495001 RAL-304_100b 1403 chr2R 14497391 14497415 chr2R 14498554 14498606 1360 23 1187 10.0 12.5 11.2 1.9 1215 chr2R 14497391 3` UTR Cpsf160 - chr2R 14497998 intron Cpsf160 - chr2R 14498606 3` UTR Cpsf160 - chr2R_23_14495001 chr2R_14495001 RAL-304_100b 1404 chr2R 14514460 14514499 chr2R 14514581 14514617 17 120 15.0 8.5 11.8 1.3 157 chr2R 14514460 intron,intron Cpr51A -,CG30197 + chr2R 14514538 intron,intron Cpr51A -,CG30197 + chr2R 14514617 intron,intron Cpr51A -,CG30197 + chr2R_17_14510001 chr2R_14510001 RAL-304_100b 1405 chr2R 14530343 14530380 chr2R 14530452 14530494 22 105 26.5 12.5 19.5 1.1 151 chr2R 14530343 intron ttv + chr2R 14530418 intron ttv + chr2R 14530494 intron ttv + chr2R_22_14530001 chr2R_14530001 RAL-304_100b 1406 chr2R 14538933 14538982 chr2R 14539034 14539083 39 94 21.0 31.5 26.2 1.4 150 chr2R 14538933 intron ttv + chr2R 14539008 intron ttv + chr2R 14539083 intron ttv + chr2R_39_14535001 chr2R_14535001 RAL-304_100b 1407 chr2R 14722287 14722302 chr2R 14722416 14722431 12 129 10.0 48.0 29.0 0.4 144 chr2R 14722287 intergenic not near genes chr2R 14722359 intergenic not near genes chr2R 14722431 intergenic not near genes chr2R_12_14720001 chr2R_14720001 RAL-304_100b 1408 chr2R 14722864 14722887 chr2R 14722980 14723002 9 124 14.0 0.0 7.0 1.1 138 chr2R 14722864 intergenic not near genes chr2R 14722933 intergenic not near genes chr2R 14723002 intergenic not near genes chr2R_9_14720001 chr2R_14720001 RAL-304_100b 1409 chr2R 14733617 14733685 chr2R 14733735 14733794 12 110 0.0 11.0 5.5 1.8 177 chr2R 14733617 intergenic not near genes chr2R 14733706 intergenic not near genes chr2R 14733794 intergenic not near genes chr2R_12_14730001 chr2R_14730001 RAL-304_100b 1410 chr2R 14748155 14748218 chr2R 14748491 14748546 11 333 0.0 4.0 2.0 3.7 391 chr2R 14748155 3` UTR AttA + chr2R 14748350 intergenic AttA + chr2R 14748546 intergenic AttA + chr2R_11_14745001 chr2R_14745001 RAL-304_100b 1411 chr2R 14748837 14748883 chr2R 14748961 14748977 14 118 9.0 7.5 8.2 1.5 140 chr2R 14748837 intergenic AttB + chr2R 14748907 intergenic AttB + chr2R 14748977 intergenic AttB + chr2R_14_14745001 chr2R_14745001 RAL-304_100b 1412 chr2R 14796305 14796555 chr2R 14796414 14796661 7 102 0.0 0.0 0.0 7.0 356 chr2R 14796305 intron kn - chr2R 14796483 intron kn - chr2R 14796661 intron kn - chr2R_7_14795001 chr2R_14795001 RAL-304_100b 1413 chr2R 14803451 14803506 chr2R 14803556 14803611 12 104 5.5 10.0 7.8 1.4 160 chr2R 14803451 intron kn - chr2R 14803531 intron kn - chr2R 14803611 intron kn - chr2R_12_14800001 chr2R_14800001 RAL-304_100b 1414 chr2R 14811613 14811670 chr2R 14811721 14811778 15 108 11.0 0.5 5.8 2.2 165 chr2R 14811613 intergenic not near genes chr2R 14811696 intergenic not near genes chr2R 14811778 intergenic not near genes chr2R_15_14810001 chr2R_14810001 RAL-304_100b 1415 chr2R 14826374 14826396 chr2R 14826503 14826519 18 129 12.0 0.0 6.0 2.6 145 chr2R 14826374 intergenic not near genes chr2R 14826446 intergenic not near genes chr2R 14826519 intergenic not near genes chr2R_18_14825001 chr2R_14825001 RAL-304_100b 1416 chr2R 14842362 14842395 chr2R 14842483 14842516 17 120 11.0 4.0 7.5 2.0 154 chr2R 14842362 intergenic NaPi-T - chr2R 14842439 intergenic NaPi-T - chr2R 14842516 intergenic NaPi-T - chr2R_17_14840001 chr2R_14840001 RAL-304_100b 1417 chr2R 14855004 14855058 chr2R 14855121 14855134 43 112 20.5 0.5 10.5 3.7 130 chr2R 14855004 5` UTR Ciao1 - chr2R 14855069 intergenic Ciao1 -,HPS1 + chr2R 14855134 intergenic Ciao1 -,HPS1 + chr2R_43_14855001 chr2R_14855001 RAL-304_100b 1418 chr2R 14873667 14873718 chr2R 14875210 14875261 28 1541 12.0 1.0 6.5 3.7 1594 chr2R 14873667 intergenic Cyp6a22 +,Cyp6a17 + chr2R 14874464 exon Cyp6a17 + chr2R 14875261 exon Cyp6a17 + chr2R_28_14870001 chr2R_14870001 RAL-304_100b 1419 chr2R 14875225 14875265 chr2R 14875661 14875702 21 435 1.0 10.5 5.8 3.1 477 chr2R 14875225 exon Cyp6a17 + chr2R 14875464 exon Cyp6a17 + chr2R 14875702 3` UTR Cyp6a17 + chr2R_21_14875001 chr2R_14875001 RAL-304_100b 1420 chr2R 14889190 14889194 chr2R 14897823 14897827 Max-element 4 8633 32.5 0.0 16.2 0.2 8637 chr2R 14889190 intergenic Cyp6a8 - chr2R 14893508 intergenic not near genes chr2R 14897827 intergenic not near genes chr2R_4_14890001 chr2R_14890001 RAL-304_100b 1421 chr2R 14889199 14889216 chr2R 14897816 14897834 Max-element 14 8628 22.0 0.0 11.0 1.2 8635 chr2R 14889199 intergenic Cyp6a8 - chr2R 14893516 intergenic not near genes chr2R 14897834 intergenic not near genes chr2R_14_14890001 chr2R_14890001 RAL-304_100b 1422 chr2R 14911675 14911726 chr2R 14911823 14911874 36 147 13.5 9.0 11.2 3.0 199 chr2R 14911675 intron CG10249 - chr2R 14911774 intron CG10249 - chr2R 14911874 intron CG10249 - chr2R_36_14910001 chr2R_14910001 RAL-304_100b 1423 chr2R 14916530 14916556 chr2R 14916635 14916661 13 104 12.5 10.5 11.5 1.0 131 chr2R 14916530 intron CG10249 - chr2R 14916596 intron CG10249 - chr2R 14916661 intron CG10249 - chr2R_13_14915001 chr2R_14915001 RAL-304_100b 1424 chr2R 14919132 14919178 chr2R 14919266 14919312 17 133 4.5 1.5 3.0 4.2 180 chr2R 14919132 intron CG10249 - chr2R 14919222 intron CG10249 - chr2R 14919312 intron CG10249 - chr2R_17_14915001 chr2R_14915001 RAL-304_100b 1425 chr2R 14922116 14922174 chr2R 14922217 14922275 49 98 14.5 10.5 12.5 3.6 159 chr2R 14922116 intron CG10249 - chr2R 14922196 intron CG10249 - chr2R 14922275 intron CG10249 - chr2R_49_14920001 chr2R_14920001 RAL-304_100b 1426 chr2R 14930830 14930848 chr2R 14930948 14930966 6 118 0.0 0.5 0.2 5.0 136 chr2R 14930830 intron CG10253 - chr2R 14930898 intron CG10253 - chr2R 14930966 intron CG10253 - chr2R_6_14930001 chr2R_14930001 RAL-304_100b 1427 chr2R 14957643 14957668 chr2R 14957763 14957788 8 120 6.5 1.0 3.8 1.7 145 chr2R 14957643 intron aPKC - chr2R 14957716 intron aPKC - chr2R 14957788 intron aPKC - chr2R_8_14955001 chr2R_14955001 RAL-304_100b 1428 chr2R 14944021 14944032 chr2R 14983994 14984005 6 39965 103.5 42.5 73.0 0.1 39984 chr2R 14944021 exon CG10257 + chr2R 14964013 intron ckn + chr2R 14984005 intron pcs + chr2R_6_14960001 chr2R_14960001 RAL-304_100b 1429 chr2R 15001574 15001612 chr2R 15001694 15001732 26 118 12.0 12.5 12.2 2.0 158 chr2R 15001574 intergenic not near genes chr2R 15001653 intergenic not near genes chr2R 15001732 intergenic not near genes chr2R_26_15000001 chr2R_15000001 RAL-304_100b 1430 chr2R 15001614 15001621 chr2R 15001691 15001741 6 113 9.5 12.5 11.0 0.5 127 chr2R 15001614 intergenic not near genes chr2R 15001678 intergenic not near genes chr2R 15001741 intergenic not near genes chr2R_6_15000001 chr2R_15000001 RAL-304_100b 1431 chr2R 15004698 15004755 chr2R 15005053 15005108 jockey 29 352 16.0 12.5 14.2 1.9 410 chr2R 15004698 intergenic not near genes chr2R 15004903 intergenic not near genes chr2R 15005108 intergenic not near genes chr2R_29_15000001 chr2R_15000001 RAL-304_100b 1432 chr2R 15007720 15007723 chr2R 22230113 22230115 5 7222395 65.5 50.5 58.0 0.1 7222395 chr2R 15007720 intergenic not near genes chr2R 18618918 intron CG5493 - chr2R 22230115 intergenic not near genes chr2R_5_18615001 chr2R_18615001 RAL-304_100b 1433 chr2R 15008596 15008646 chr2R 15008742 15008792 43 145 18.0 17.0 17.5 2.3 196 chr2R 15008596 intergenic not near genes chr2R 15008694 intergenic not near genes chr2R 15008792 intergenic not near genes chr2R_43_15005001 chr2R_15005001 RAL-304_100b 1434 chr2R 15015431 15015487 chr2R 15022880 15022932 mdg1 25 7446 8.0 9.5 8.8 2.6 7501 chr2R 15015431 intron hbs + chr2R 15019182 intron hbs + chr2R 15022932 intron hbs + chr2R_25_15015001 chr2R_15015001 RAL-304_100b 1435 chr2R 15043170 15043190 chr2R 15043293 15043316 15 125 20.5 11.0 15.8 0.9 146 chr2R 15043170 intergenic not near genes chr2R 15043243 intergenic not near genes chr2R 15043316 intergenic not near genes chr2R_15_15040001 chr2R_15040001 RAL-304_100b 1436 chr2R 15073100 15073117 chr2R 15073208 15073225 16 108 11.0 12.0 11.5 1.3 125 chr2R 15073100 intergenic not near genes chr2R 15073162 intergenic not near genes chr2R 15073225 intergenic not near genes chr2R_16_15070001 chr2R_15070001 RAL-304_100b 1437 chr2R 15073118 15073136 chr2R 15073205 15073244 9 102 8.5 10.5 9.5 0.9 126 chr2R 15073118 intergenic not near genes chr2R 15073181 intergenic not near genes chr2R 15073244 intergenic not near genes chr2R_9_15070001 chr2R_15070001 RAL-304_100b 1438 chr2R 15084956 15085005 chr2R 15092028 15092079 297 43 7070 13.5 20.5 17.0 2.4 7123 chr2R 15084956 intergenic not near genes chr2R 15088518 intergenic not near genes chr2R 15092079 5` UTR CR44457 + chr2R_43_15085001 chr2R_15085001 RAL-304_100b 1439 chr2R 15092184 15092190 chr2R 15092249 15092292 8 86 12.0 20.0 16.0 0.5 108 chr2R 15092184 intron CR44457 + chr2R 15092238 5` UTR CR44457 + chr2R 15092292 5` UTR CR44457 + chr2R_8_15090001 chr2R_15090001 RAL-304_100b 1440 chr2R 15094863 15094916 chr2R 15094965 15095018 32 101 17.5 16.0 16.8 1.8 155 chr2R 15094863 intergenic not near genes chr2R 15094940 intergenic not near genes chr2R 15095018 intergenic not near genes chr2R_32_15090001 chr2R_15090001 RAL-304_100b 1441 chr2R 15112856 15112867 chr2R 15112990 15113001 10 133 10.0 25.5 17.8 0.5 145 chr2R 15112856 intergenic not near genes chr2R 15112928 intergenic not near genes chr2R 15113001 intergenic not near genes chr2R_10_15110001 chr2R_15110001 RAL-304_100b 1442 chr2R 15119300 15119350 chr2R 15127800 15127840 Tirant 35 8501 14.0 6.0 10.0 3.2 8540 chr2R 15119300 intron chn + chr2R 15123570 intron chn + chr2R 15127840 intron chn + chr2R_35_15120001 chr2R_15120001 RAL-304_100b 1443 chr2R 15137944 15138004 chr2R 15138048 15138096 59 100 15.0 7.5 11.2 4.8 152 chr2R 15137944 intron chn + chr2R 15138020 intron chn + chr2R 15138096 intron chn + chr2R_59_15135001 chr2R_15135001 RAL-304_100b 1444 chr2R 15168249 15168303 chr2R 15168365 15168421 34 115 14.5 9.5 12.0 2.6 172 chr2R 15168249 intron igl + chr2R 15168335 intron igl + chr2R 15168421 intron igl + chr2R_34_15165001 chr2R_15165001 RAL-304_100b 1445 chr2R 15230363 15230370 chr2R 15230666 15230672 4 302 51.5 10.0 30.8 0.1 309 chr2R 15230363 intron,5` UTR Fs -,CR44370 + chr2R 15230518 intron,5` UTR Fs -,CR44370 + chr2R 15230672 intron,5` UTR Fs -,CR44370 + chr2R_4_15230001 chr2R_15230001 RAL-304_100b 1446 chr2R 15277066 15277123 chr2R 15277192 15277247 24 122 12.5 9.0 10.8 2.0 181 chr2R 15277066 intron Trpm - chr2R 15277156 intron Trpm - chr2R 15277247 intron Trpm - chr2R_24_15275001 chr2R_15275001 RAL-304_100b 1447 chr2R 15285540 15285599 chr2R 15285641 15285648 38 99 8.0 12.5 10.2 3.4 108 chr2R 15285540 intron Trpm - chr2R 15285594 intron Trpm - chr2R 15285648 intron Trpm - chr2R_38_15285001 chr2R_15285001 RAL-304_100b 1448 chr2R 15295258 15295396 chr2R 15295393 15295502 6 129 0.0 0.0 0.0 6.0 244 chr2R 15295258 intron Trpm - chr2R 15295380 intron Trpm - chr2R 15295502 intron Trpm - chr2R_6_15295001 chr2R_15295001 RAL-304_100b 1449 chr2R 15315698 15315754 chr2R 15315800 15315854 38 101 8.5 9.0 8.8 3.9 156 chr2R 15315698 exon mus210 + chr2R 15315776 exon mus210 + chr2R 15315854 exon mus210 + chr2R_38_15315001 chr2R_15315001 RAL-304_100b 1450 chr2R 15338221 15338263 chr2R 15338322 15338367 47 103 13.0 14.5 13.8 3.2 146 chr2R 15338221 intron Hr51 + chr2R 15338294 intron Hr51 + chr2R 15338367 intron Hr51 + chr2R_47_15335001 chr2R_15335001 RAL-304_100b 1451 chr2R 15390389 15390396 chr2R 15390508 15390513 8 118 0.0 28.5 14.2 0.5 124 chr2R 15390389 intergenic not near genes chr2R 15390451 intergenic not near genes chr2R 15390513 intergenic not near genes chr2R_8_15390001 chr2R_15390001 RAL-304_100b 1452 chr2R 15390397 15390422 chr2R 15390503 15390541 30 117 0.0 27.5 13.8 2.0 144 chr2R 15390397 intergenic not near genes chr2R 15390469 intergenic not near genes chr2R 15390541 intergenic not near genes chr2R_30_15390001 chr2R_15390001 RAL-304_100b 1453 chr2R 15402571 15402613 chr2R 15402709 15402741 16 132 6.0 11.0 8.5 1.7 170 chr2R 15402571 intron CG43729 + chr2R 15402656 intron CG43729 + chr2R 15402741 intron CG43729 + chr2R_16_15400001 chr2R_15400001 RAL-304_100b 1454 chr2R 15422528 15422562 chr2R 15422614 15422664 28 98 5.0 22.5 13.8 1.9 136 chr2R 15422528 intron CG43729 + chr2R 15422596 intron CG43729 + chr2R 15422664 intron CG43729 + chr2R_28_15420001 chr2R_15420001 RAL-304_100b 1455 chr2R 15484275 15484305 chr2R 15484429 15484447 16 152 19.5 7.0 13.2 1.1 172 chr2R 15484275 intergenic not near genes chr2R 15484361 intergenic not near genes chr2R 15484447 intergenic not near genes chr2R_16_15480001 chr2R_15480001 RAL-304_100b 1456 chr2R 15537683 15537741 chr2R 15537790 15537848 36 106 12.0 3.5 7.8 4.1 165 chr2R 15537683 3` UTR CG30471 + chr2R 15537766 3` UTR CG30471 + chr2R 15537848 intergenic CG30471 +,CG30467 + chr2R_36_15535001 chr2R_15535001 RAL-304_100b 1457 chr2R 15585725 15585782 chr2R 15585834 15585891 17 107 6.0 3.5 4.8 2.9 166 chr2R 15585725 intergenic not near genes chr2R 15585808 intergenic not near genes chr2R 15585891 intergenic not near genes chr2R_17_15585001 chr2R_15585001 RAL-304_100b 1458 chr2R 15618437 15618486 chr2R 15618590 15618643 30 145 24.0 19.0 21.5 1.3 206 chr2R 15618437 intron CG42524 + chr2R 15618540 intron CG42524 + chr2R 15618643 intron CG42524 + chr2R_30_15615001 chr2R_15615001 RAL-304_100b 1459 chr2R 15655955 15656012 chr2R 15656060 15656101 49 102 13.5 12.0 12.8 3.6 146 chr2R 15655955 intron CG42524 + chr2R 15656028 intron CG42524 + chr2R 15656101 intron CG42524 + chr2R_49_15655001 chr2R_15655001 RAL-304_100b 1460 chr2R 15675118 15675141 chr2R 15675194 15675243 19 100 7.5 13.0 10.2 1.7 125 chr2R 15675118 intron fus - chr2R 15675180 intron fus - chr2R 15675243 intron fus - chr2R_19_15675001 chr2R_15675001 RAL-304_100b 1461 chr2R 15699998 15700278 chr2R 15700113 15700398 83 114 11.0 13.5 12.2 6.3 400 chr2R 15699998 3` UTR,5` UTR CG30080 -,CG42662 - chr2R 15700198 intron,5` UTR CG30080 -,CG42662 - chr2R 15700398 intron,5` UTR CG30080 -,CG42662 - chr2R_83_15700001 chr2R_15700001 RAL-304_100b 1462 chr2R 15728271 15728329 chr2R 15728392 15728450 8 121 10.5 0.0 5.2 1.3 179 chr2R 15728271 intron CG30089 + chr2R 15728360 intron CG30089 + chr2R 15728450 intron CG30089 + chr2R_8_15725001 chr2R_15725001 RAL-304_100b 1463 chr2R 15795440 15795496 chr2R 15795562 15795592 54 114 19.0 13.5 16.2 3.1 152 chr2R 15795440 intron,intron Zasp52 -,tun + chr2R 15795516 intron,intron Zasp52 -,tun + chr2R 15795592 intron,intron Zasp52 -,tun + chr2R_54_15795001 chr2R_15795001 RAL-304_100b 1464 chr2R 15828906 15828942 chr2R 15829407 15829411 24 499 5.5 17.0 11.2 2.0 505 chr2R 15828906 intron,intron tun +,Poxn - chr2R 15829158 intron,intron tun +,Poxn - chr2R 15829411 intron,intron tun +,Poxn - chr2R_24_15825001 chr2R_15825001 RAL-304_100b 1465 chr2R 15828943 15828959 chr2R 15829406 15829466 22 498 4.0 16.0 10.0 2.0 523 chr2R 15828943 intron,intron tun +,Poxn - chr2R 15829204 intron,intron tun +,Poxn - chr2R 15829466 intron,intron tun +,Poxn - chr2R_22_15825001 chr2R_15825001 RAL-304_100b 1466 chr2R 15847582 15847633 chr2R 15847684 15847735 42 98 8.5 16.0 12.2 3.2 153 chr2R 15847582 intron tun + chr2R 15847658 intron tun + chr2R 15847735 intron tun + chr2R_42_15845001 chr2R_15845001 RAL-304_100b 1467 chr2R 15873836 15873846 chr2R 15873955 15873965 5 117 24.5 5.0 14.8 0.3 129 chr2R 15873836 intron sli - chr2R 15873900 intron sli - chr2R 15873965 intron sli - chr2R_5_15870001 chr2R_15870001 RAL-304_100b 1468 chr2R 15873847 15873886 chr2R 15873954 15874005 28 117 10.0 5.0 7.5 3.3 158 chr2R 15873847 intron sli - chr2R 15873926 intron sli - chr2R 15874005 intron sli - chr2R_28_15870001 chr2R_15870001 RAL-304_100b 1469 chr2R 15911215 15911275 chr2R 15911470 15911530 48 251 11.5 9.0 10.2 4.3 315 chr2R 15911215 intron sli - chr2R 15911372 intron sli - chr2R 15911530 intron sli - chr2R_48_15910001 chr2R_15910001 RAL-304_100b 1470 chr2R 15930355 15930401 chr2R 15930457 15930463 9 96 36.5 5.0 20.8 0.4 108 chr2R 15930355 intron bdg - chr2R 15930409 intron bdg - chr2R 15930463 intron bdg - chr2R_9_15930001 chr2R_15930001 RAL-304_100b 1471 chr2R 15998993 15999052 chr2R 15999098 15999157 48 102 8.5 12.0 10.2 4.3 164 chr2R 15998993 intron ATPCL - chr2R 15999075 intron ATPCL - chr2R 15999157 intron ATPCL - chr2R_48_15995001 chr2R_15995001 RAL-304_100b 1472 chr2R 16039191 16039252 chr2R 16039328 16039383 59 131 16.0 17.0 16.5 3.4 192 chr2R 16039191 intron SP2353 + chr2R 16039287 intron SP2353 + chr2R 16039383 intron SP2353 + chr2R_59_16035001 chr2R_16035001 RAL-304_100b 1473 chr2R 16123719 16123758 chr2R 16123817 16123863 7 96 0.0 10.5 5.2 1.1 144 chr2R 16123719 intron CG30095 + chr2R 16123791 intron CG30095 + chr2R 16123863 intron CG30095 + chr2R_7_16120001 chr2R_16120001 RAL-304_100b 1474 chr2R 16133801 16133808 chr2R 16133903 16133910 5 102 40.5 44.5 42.5 0.1 109 chr2R 16133801 intron spin + chr2R 16133856 intron spin + chr2R 16133910 intron spin + chr2R_5_16130001 chr2R_16130001 RAL-304_100b 1475 chr2R 16133812 16133819 chr2R 16133902 16133921 8 99 34.0 43.5 38.8 0.2 109 chr2R 16133812 intron spin + chr2R 16133866 intron spin + chr2R 16133921 intron spin + chr2R_8_16130001 chr2R_16130001 RAL-304_100b 1476 chr2R 16243546 16243587 chr2R 16243708 16243749 38 158 8.0 13.5 10.8 3.2 203 chr2R 16243546 3` UTR CngA - chr2R 16243648 3` UTR CngA - chr2R 16243749 3` UTR CngA - chr2R_38_16240001 chr2R_16240001 RAL-304_100b 1477 chr2R 16252477 16252526 chr2R 16252584 16252634 48 105 23.5 13.5 18.5 2.5 157 chr2R 16252477 intron CngA - chr2R 16252556 intron CngA - chr2R 16252634 intron CngA - chr2R_48_16250001 chr2R_16250001 RAL-304_100b 1478 chr2R 16431201 16431244 chr2R 16431302 16431345 13 101 10.5 7.5 9.0 1.3 144 chr2R 16431201 3` UTR Sema-2b + chr2R 16431273 3` UTR Sema-2b + chr2R 16431345 3` UTR Sema-2b + chr2R_13_16430001 chr2R_16430001 RAL-304_100b 1479 chr2R 16438090 16438122 chr2R 16438409 16438441 26 317 18.0 13.0 15.5 1.6 351 chr2R 16438090 intergenic not near genes chr2R 16438266 intergenic not near genes chr2R 16438441 intergenic not near genes chr2R_26_16435001 chr2R_16435001 RAL-304_100b 1480 chr2R 16517299 16517327 chr2R 16517405 16517405 8 97 25.5 0.0 12.8 0.6 106 chr2R 16517299 intron Sema-2a + chr2R 16517352 intron Sema-2a + chr2R 16517405 intron Sema-2a + chr2R_8_16515001 chr2R_16515001 RAL-304_100b 1481 chr2R 16539622 16539633 chr2R 16544853 16544864 copia 4 5231 7.5 0.5 4.0 0.8 5242 chr2R 16539622 intergenic not near genes chr2R 16542243 intergenic not near genes chr2R 16544864 intergenic not near genes chr2R_4_16540001 chr2R_16540001 RAL-304_100b 1482 chr2R 16544845 16544859 chr2R 16544944 16544969 5 108 0.0 0.0 0.0 5.0 124 chr2R 16544845 intergenic not near genes chr2R 16544907 intergenic not near genes chr2R 16544969 intergenic not near genes chr2R_5_16540001 chr2R_16540001 RAL-304_100b 1483 chr2R 16596897 16596946 chr2R 16597085 16597134 37 185 14.5 10.0 12.2 2.8 237 chr2R 16596897 exon CG8303 - chr2R 16597016 intron CG8303 - chr2R 16597134 intron CG8303 - chr2R_37_16595001 chr2R_16595001 RAL-304_100b 1484 chr2R 16668166 16668169 chr2R 16668269 16668272 4 103 48.0 16.0 32.0 0.1 106 chr2R 16668166 intergenic Picot - chr2R 16668219 intergenic not near genes chr2R 16668272 intergenic not near genes chr2R_4_16665001 chr2R_16665001 RAL-304_100b 1485 chr2R 16668172 16668218 chr2R 16668266 16668321 22 98 13.5 14.5 14.0 1.5 149 chr2R 16668172 intergenic Picot - chr2R 16668246 intergenic not near genes chr2R 16668321 intergenic not near genes chr2R_22_16665001 chr2R_16665001 RAL-304_100b 1486 chr2R 16672766 16672781 chr2R 16672871 16672886 11 104 33.0 15.5 24.2 0.4 120 chr2R 16672766 exon CG34458 + chr2R 16672826 3` UTR CG34458 + chr2R 16672886 3` UTR CG34458 + chr2R_11_16670001 chr2R_16670001 RAL-304_100b 1487 chr2R 16672782 16672821 chr2R 16672867 16672926 39 101 18.0 17.5 17.8 2.1 144 chr2R 16672782 exon CG34458 + chr2R 16672854 3` UTR CG34458 + chr2R 16672926 intergenic CG34458 +,CG30463 - chr2R_39_16670001 chr2R_16670001 RAL-304_100b 1488 chr2R 16713054 16713066 chr2R 16713133 16713175 8 105 0.0 0.0 0.0 8.0 121 chr2R 16713054 intron CG30463 - chr2R 16713114 intron CG30463 - chr2R 16713175 intron CG30463 - chr2R_8_16710001 chr2R_16710001 RAL-304_100b 1489 chr2R 16714454 16714500 chr2R 16714581 16714627 10 123 7.0 9.5 8.2 1.1 173 chr2R 16714454 intron CG30463 - chr2R 16714540 intron CG30463 - chr2R 16714627 intron CG30463 - chr2R_10_16710001 chr2R_16710001 RAL-304_100b 1490 chr2R 16726654 16726690 chr2R 16726778 16726814 19 124 6.0 11.5 8.8 1.9 160 chr2R 16726654 intron CG30463 - chr2R 16726734 intron CG30463 - chr2R 16726814 intron CG30463 - chr2R_19_16725001 chr2R_16725001 RAL-304_100b 1491 chr2R 16727921 16727975 chr2R 16728022 16728076 24 98 5.5 8.5 7.0 3.0 155 chr2R 16727921 intron CG30463 - chr2R 16727998 intron CG30463 - chr2R 16728076 intron CG30463 - chr2R_24_16725001 chr2R_16725001 RAL-304_100b 1492 chr2R 16730374 16730450 chr2R 16730501 16730532 14 110 0.0 9.0 4.5 2.5 158 chr2R 16730374 intron CG30463 - chr2R 16730453 intron CG30463 - chr2R 16730532 intron CG30463 - chr2R_14_16730001 chr2R_16730001 RAL-304_100b 1493 chr2R 16739457 16739465 chr2R 16739565 16739573 4 108 14.0 0.0 7.0 0.5 116 chr2R 16739457 intergenic not near genes chr2R 16739515 intergenic not near genes chr2R 16739573 intergenic not near genes chr2R_4_16735001 chr2R_16735001 RAL-304_100b 1494 chr2R 16775631 16775675 chr2R 16775923 16775967 29 289 8.5 13.0 10.8 2.5 336 chr2R 16775631 3` UTR Arp53D + chr2R 16775799 intergenic Arp53D + chr2R 16775967 intergenic Arp53D + chr2R_29_16775001 chr2R_16775001 RAL-304_100b 1495 chr2R 16799018 16799037 chr2R 16799123 16799142 14 104 22.0 5.5 13.8 0.9 124 chr2R 16799018 intergenic not near genes chr2R 16799080 intergenic not near genes chr2R 16799142 intergenic not near genes chr2R_14_16795001 chr2R_16795001 RAL-304_100b 1496 chr2R 16799039 16799062 chr2R 16799117 16799140 14 97 11.0 4.5 7.8 1.6 101 chr2R 16799039 intergenic not near genes chr2R 16799090 intergenic not near genes chr2R 16799140 intergenic not near genes chr2R_14_16795001 chr2R_16795001 RAL-304_100b 1497 chr2R 16870751 16870758 chr2R 16870919 16870926 5 168 16.5 9.0 12.8 0.4 175 chr2R 16870751 intron CG6426 + chr2R 16870838 intron CG6426 + chr2R 16870926 intron CG6426 + chr2R_5_16870001 chr2R_16870001 RAL-304_100b 1498 chr2R 16870759 16870780 chr2R 16870912 16870948 22 163 10.5 8.0 9.2 2.2 189 chr2R 16870759 intron CG6426 + chr2R 16870854 intron CG6426 + chr2R 16870948 intron CG6426 + chr2R_22_16870001 chr2R_16870001 RAL-304_100b 1499 chr2R 16904245 16904257 chr2R 16904366 16904379 10 120 39.0 12.0 25.5 0.4 134 chr2R 16904245 intergenic not near genes chr2R 16904312 intergenic not near genes chr2R 16904379 intergenic not near genes chr2R_10_16900001 chr2R_16900001 RAL-304_100b 1500 chr2R 16904258 16904264 chr2R 16904364 16904365 12 112 36.0 10.5 23.2 0.5 107 chr2R 16904258 intergenic not near genes chr2R 16904312 intergenic not near genes chr2R 16904365 intergenic not near genes chr2R_12_16900001 chr2R_16900001 RAL-304_100b 1501 chr2R 16904797 16904851 chr2R 16904918 16904955 14 120 3.5 9.0 6.2 1.9 158 chr2R 16904797 intergenic not near genes chr2R 16904876 intergenic not near genes chr2R 16904955 intergenic not near genes chr2R_14_16900001 chr2R_16900001 RAL-304_100b 1502 chr2R 16912664 16912718 chr2R 16912830 16912852 56 163 19.5 13.5 16.5 3.2 188 chr2R 16912664 intergenic not near genes chr2R 16912758 intergenic not near genes chr2R 16912852 intergenic not near genes chr2R_56_16910001 chr2R_16910001 RAL-304_100b 1503 chr2R 16982058 16982097 chr2R 16982161 16982198 15 102 0.0 8.5 4.2 2.9 140 chr2R 16982058 intron Cbp53E + chr2R 16982128 intron Cbp53E + chr2R 16982198 intron Cbp53E + chr2R_15_16980001 chr2R_16980001 RAL-304_100b 1504 chr2R 16987017 16987071 chr2R 16987163 16987217 40 145 14.0 8.0 11.0 3.3 200 chr2R 16987017 intron Cbp53E + chr2R 16987117 intron Cbp53E + chr2R 16987217 intron Cbp53E + chr2R_40_16985001 chr2R_16985001 RAL-304_100b 1505 chr2R 17048599 17048654 chr2R 17048703 17048758 28 102 8.5 7.5 8.0 3.1 159 chr2R 17048599 3` UTR CG9642 + chr2R 17048678 3` UTR CG9642 + chr2R 17048758 3` UTR CG9642 + chr2R_28_17045001 chr2R_17045001 RAL-304_100b 1506 chr2R 17132841 17132846 chr2R 17132959 17132969 4 122 13.5 0.5 7.0 0.5 128 chr2R 17132841 intergenic not near genes chr2R 17132905 intergenic not near genes chr2R 17132969 intergenic Acp54A1 + chr2R_4_17130001 chr2R_17130001 RAL-304_100b 1507 chr2R 17132850 17132863 chr2R 17132957 17132987 5 119 10.0 0.5 5.2 0.8 137 chr2R 17132850 intergenic not near genes chr2R 17132918 intergenic not near genes chr2R 17132987 intergenic Acp54A1 + chr2R_5_17130001 chr2R_17130001 RAL-304_100b 1508 chr2R 17147226 17147232 chr2R 17152276 17152288 jockey 5 5052 34.5 25.5 30.0 0.2 5062 chr2R 17147226 intergenic not near genes chr2R 17149757 intergenic not near genes chr2R 17152288 intergenic not near genes chr2R_5_17145001 chr2R_17145001 RAL-304_100b 1509 chr2R 17147235 17147277 chr2R 17152275 17152277 jockey 24 5050 15.0 25.5 20.2 1.1 5042 chr2R 17147235 intergenic not near genes chr2R 17149756 intergenic not near genes chr2R 17152277 intergenic not near genes chr2R_24_17145001 chr2R_17145001 RAL-304_100b 1510 chr2R 17214638 17214686 chr2R 17214763 17214811 29 122 14.5 6.5 10.5 2.5 173 chr2R 17214638 intergenic not near genes chr2R 17214724 intergenic not near genes chr2R 17214811 intergenic not near genes chr2R_29_17210001 chr2R_17210001 RAL-304_100b 1511 chr2R 17221883 17221896 chr2R 17222100 17222113 10 216 35.5 13.5 24.5 0.4 230 chr2R 17221883 intron mbl + chr2R 17221998 intron mbl + chr2R 17222113 intron mbl + chr2R_10_17220001 chr2R_17220001 RAL-304_100b 1512 chr2R 17221898 17221930 chr2R 17222099 17222141 26 213 16.5 12.0 14.2 1.7 243 chr2R 17221898 intron mbl + chr2R 17222020 intron mbl + chr2R 17222141 intron mbl + chr2R_26_17220001 chr2R_17220001 RAL-304_100b 1513 chr2R 17221931 17221936 chr2R 17222098 17222147 7 205 15.0 11.5 13.2 0.5 216 chr2R 17221931 intron mbl + chr2R 17222039 intron mbl + chr2R 17222147 intron mbl + chr2R_7_17220001 chr2R_17220001 RAL-304_100b 1514 chr2R 17227570 17227576 chr2R 17227728 17227734 8 158 0.5 15.0 7.8 0.9 164 chr2R 17227570 intron mbl + chr2R 17227652 intron mbl + chr2R 17227734 intron mbl + chr2R_8_17225001 chr2R_17225001 RAL-304_100b 1515 chr2R 17227578 17227589 chr2R 17227726 17227747 4 153 0.5 14.5 7.5 0.5 169 chr2R 17227578 intron mbl + chr2R 17227662 intron mbl + chr2R 17227747 intron mbl + chr2R_4_17225001 chr2R_17225001 RAL-304_100b 1516 chr2R 17227594 17227604 chr2R 17227725 17227762 6 153 0.5 13.5 7.0 0.8 168 chr2R 17227594 intron mbl + chr2R 17227678 intron mbl + chr2R 17227762 intron mbl + chr2R_6_17225001 chr2R_17225001 RAL-304_100b 1517 chr2R 17232765 17232825 chr2R 17232878 17232936 37 103 13.0 9.0 11.0 3.1 171 chr2R 17232765 intron mbl + chr2R 17232850 intron mbl + chr2R 17232936 intron mbl + chr2R_37_17230001 chr2R_17230001 RAL-304_100b 1518 chr2R 17234103 17234156 chr2R 17234483 17234521 52 378 7.5 11.5 9.5 5.0 418 chr2R 17234103 intron mbl + chr2R 17234312 intron mbl + chr2R 17234521 intron mbl + chr2R_52_17230001 chr2R_17230001 RAL-304_100b 1519 chr2R 17236483 17236509 chr2R 17241712 17241737 copia 20 5228 28.0 21.5 24.8 0.8 5254 chr2R 17236483 intron mbl + chr2R 17239110 intron mbl + chr2R 17241737 intron mbl + chr2R_20_17235001 chr2R_17235001 RAL-304_100b 1520 chr2R 17236511 17236536 chr2R 17241710 17241757 copia 29 5225 17.0 18.0 17.5 1.6 5246 chr2R 17236511 intron mbl + chr2R 17239134 intron mbl + chr2R 17241757 intron mbl + chr2R_29_17235001 chr2R_17235001 RAL-304_100b 1521 chr2R 17277237 17277241 chr2R 17277620 17277668 jockey 5 414 22.0 16.5 19.2 0.2 431 chr2R 17277237 intron mbl + chr2R 17277452 intron mbl + chr2R 17277668 intron mbl + chr2R_5_17275001 chr2R_17275001 RAL-304_100b 1522 chr2R 17322811 17322825 chr2R 17322933 17322947 7 122 15.5 10.5 13.0 0.5 136 chr2R 17322811 intron mbl + chr2R 17322879 intron mbl + chr2R 17322947 intron mbl + chr2R_7_17320001 chr2R_17320001 RAL-304_100b 1523 chr2R 17335679 17335734 chr2R 17335808 17335863 34 128 0.5 9.0 4.8 5.9 184 chr2R 17335679 intron mbl + chr2R 17335771 intron mbl + chr2R 17335863 intron mbl + chr2R_34_17335001 chr2R_17335001 RAL-304_100b 1524 chr2R 17395257 17395265 chr2R 17395360 17395368 4 103 28.0 8.0 18.0 0.2 111 chr2R 17395257 intron Sip1 + chr2R 17395312 intron Sip1 + chr2R 17395368 intron Sip1 + chr2R_4_17395001 chr2R_17395001 RAL-304_100b 1525 chr2R 17395271 17395313 chr2R 17395359 17395416 33 100 10.5 8.5 9.5 3.1 145 chr2R 17395271 intron Sip1 + chr2R 17395344 intron Sip1 + chr2R 17395416 intron Sip1 + chr2R_33_17395001 chr2R_17395001 RAL-304_100b 1526 chr2R 17419902 17419963 chr2R 17420008 17420066 22 104 8.0 7.5 7.8 2.5 164 chr2R 17419902 5` UTR cnk - chr2R 17419984 5` UTR cnk - chr2R 17420066 intergenic cnk -,l(2)k01209 + chr2R_22_17415001 chr2R_17415001 RAL-304_100b 1527 chr2R 17485896 17485905 chr2R 17490683 17490692 F-element 11 4787 24.0 0.0 12.0 0.8 4796 chr2R 17485896 5` UTR,intron CG43110 -,NT5E-2 + chr2R 17488294 intron NT5E-2 + chr2R 17490692 intron NT5E-2 + chr2R_11_17485001 chr2R_17485001 RAL-304_100b 1528 chr2R 17485906 17485916 chr2R 17490678 17490698 F-element 9 4784 21.5 0.0 10.8 0.8 4792 chr2R 17485906 5` UTR,intron CG43110 -,NT5E-2 + chr2R 17488302 intron NT5E-2 + chr2R 17490698 intron NT5E-2 + chr2R_9_17485001 chr2R_17485001 RAL-304_100b 1529 chr2R 17500634 17500693 chr2R 17500734 17500742 26 94 8.5 8.5 8.5 2.7 108 chr2R 17500634 intergenic not near genes chr2R 17500688 intergenic not near genes chr2R 17500742 intergenic not near genes chr2R_26_17500001 chr2R_17500001 RAL-304_100b 1530 chr2R 17697150 17697200 chr2R 17697253 17697303 18 102 6.5 9.0 7.8 2.0 153 chr2R 17697150 intron rdgBbeta - chr2R 17697226 intron rdgBbeta - chr2R 17697303 intron rdgBbeta - chr2R_18_17695001 chr2R_17695001 RAL-304_100b 1531 chr2R 17699399 17699453 chr2R 17700347 17700397 17 947 8.0 3.0 5.5 2.6 998 chr2R 17699399 5` UTR Uhg1 + chr2R 17699898 intron Uhg1 + chr2R 17700397 5` UTR Uhg1 + chr2R_17_17695001 chr2R_17695001 RAL-304_100b 1532 chr2R 17699191 17699239 chr2R 17700574 17700622 25 1384 86.0 61.0 73.5 0.3 1431 chr2R 17699191 intron Uhg1 + chr2R 17699906 intron Uhg1 + chr2R 17700622 intron Uhg1 + chr2R_25_17695001 chr2R_17695001 RAL-304_100b 1533 chr2R 17708224 17708261 chr2R 17708423 17708469 9 207 5.0 9.5 7.2 1.1 245 chr2R 17708224 intron CG6424 - chr2R 17708346 intron CG6424 - chr2R 17708469 intron CG6424 - chr2R_9_17705001 chr2R_17705001 RAL-304_100b 1534 chr2R 17709959 17709966 chr2R 17710075 17710082 4 116 33.0 6.5 19.8 0.2 123 chr2R 17709959 intron CG6424 - chr2R 17710020 intron CG6424 - chr2R 17710082 intron CG6424 - chr2R_4_17710001 chr2R_17710001 RAL-304_100b 1535 chr2R 17709967 17709983 chr2R 17710074 17710099 10 115 25.0 6.5 15.8 0.6 132 chr2R 17709967 intron CG6424 - chr2R 17710033 intron CG6424 - chr2R 17710099 intron CG6424 - chr2R_10_17710001 chr2R_17710001 RAL-304_100b 1536 chr2R 17709984 17710012 chr2R 17710073 17710128 14 113 8.5 6.5 7.5 1.6 144 chr2R 17709984 intron CG6424 - chr2R 17710056 intron CG6424 - chr2R 17710128 intron CG6424 - chr2R_14_17710001 chr2R_17710001 RAL-304_100b 1537 chr2R 17737520 17737529 chr2R 17737675 17737700 5 165 0.5 13.0 6.8 0.6 180 chr2R 17737520 intergenic CG6401 -,CG6406 - chr2R 17737610 intergenic CG6401 -,CG6406 - chr2R 17737700 3` UTR CG6401 - chr2R_5_17735001 chr2R_17735001 RAL-304_100b 1538 chr2R 17737536 17737552 chr2R 17737672 17737723 13 160 0.0 12.5 6.2 1.8 187 chr2R 17737536 intergenic CG6401 -,CG6406 - chr2R 17737630 3` UTR CG6401 - chr2R 17737723 3` UTR CG6401 - chr2R_13_17735001 chr2R_17735001 RAL-304_100b 1539 chr2R 17782338 17782394 chr2R 17783566 17783622 pogo 22 1227 6.0 7.0 6.5 2.9 1284 chr2R 17782338 intergenic CG33981 -,fab1 - chr2R 17782980 intergenic not near genes chr2R 17783622 intergenic mir-31a - chr2R_22_17780001 chr2R_17780001 RAL-304_100b 1540 chr2R 17784018 17784057 chr2R 17784268 17784323 pogo 24 258 9.0 21.5 15.2 1.5 305 chr2R 17784018 intergenic mir-31a - chr2R 17784170 intergenic mir-31a - chr2R 17784323 intergenic mir-31a - chr2R_24_17780001 chr2R_17780001 RAL-304_100b 1541 chr2R 17795634 17795652 chr2R 17795740 17795745 8 104 22.5 0.0 11.2 0.7 111 chr2R 17795634 intron Dhit + chr2R 17795690 intron Dhit + chr2R 17795745 intron Dhit + chr2R_8_17795001 chr2R_17795001 RAL-304_100b 1542 chr2R 17812799 17812818 chr2R 17812902 17812921 8 102 11.5 19.0 15.2 0.5 122 chr2R 17812799 intron grh + chr2R 17812860 intron grh + chr2R 17812921 intron grh + chr2R_8_17810001 chr2R_17810001 RAL-304_100b 1543 chr2R 17821718 17821742 chr2R 17821825 17821849 7 107 6.0 14.5 10.2 0.6 131 chr2R 17821718 intron grh + chr2R 17821784 intron grh + chr2R 17821849 intron grh + chr2R_7_17820001 chr2R_17820001 RAL-304_100b 1544 chr2R 17855513 17855550 chr2R 17855615 17855654 20 102 6.0 10.5 8.2 2.2 141 chr2R 17855513 intron olf186-F + chr2R 17855584 intron olf186-F + chr2R 17855654 intron olf186-F + chr2R_20_17855001 chr2R_17855001 RAL-304_100b 1545 chr2R 17907992 17908052 chr2R 17908093 17908147 21 100 15.0 9.5 12.2 1.6 155 chr2R 17907992 intron Elk + chr2R 17908070 intron Elk + chr2R 17908147 intron Elk + chr2R_21_17905001 chr2R_17905001 RAL-304_100b 1546 chr2R 17929101 17929148 chr2R 17929219 17929266 27 111 18.0 12.0 15.0 1.7 165 chr2R 17929101 intergenic not near genes chr2R 17929184 intergenic not near genes chr2R 17929266 intergenic not near genes chr2R_27_17925001 chr2R_17925001 RAL-304_100b 1547 chr2R 17997133 17997192 chr2R 17997240 17997299 39 105 13.0 12.5 12.8 2.8 166 chr2R 17997133 intron dpr13 - chr2R 17997216 intron dpr13 - chr2R 17997299 intron dpr13 - chr2R_39_17995001 chr2R_17995001 RAL-304_100b 1548 chr2R 18041527 18041582 chr2R 18041636 18041680 47 107 10.0 16.0 13.0 3.4 153 chr2R 18041527 intergenic not near genes chr2R 18041604 intergenic not near genes chr2R 18041680 intergenic not near genes chr2R_47_18040001 chr2R_18040001 RAL-304_100b 1549 chr2R 18045271 18045285 chr2R 18045384 18045398 12 112 18.5 0.5 9.5 1.1 127 chr2R 18045271 intergenic CG5770 - chr2R 18045334 intergenic CG5770 - chr2R 18045398 intergenic CG5770 - chr2R_12_18045001 chr2R_18045001 RAL-304_100b 1550 chr2R 18045286 18045324 chr2R 18045383 18045433 10 111 9.5 0.5 5.0 1.7 147 chr2R 18045286 intergenic CG5770 - chr2R 18045360 intergenic CG5770 - chr2R 18045433 intergenic CG5770 - chr2R_10_18045001 chr2R_18045001 RAL-304_100b 1551 chr2R 18074582 18074621 chr2R 18074683 18074701 12 97 7.5 10.0 8.8 1.2 119 chr2R 18074582 intron CG34386 + chr2R 18074642 intron CG34386 + chr2R 18074701 intron CG34386 + chr2R_12_18070001 chr2R_18070001 RAL-304_100b 1552 chr2R 18107745 18107786 chr2R 18107852 18107893 11 107 3.5 0.0 1.8 3.9 148 chr2R 18107745 intron CG5756 - chr2R 18107819 intron CG5756 - chr2R 18107893 intron CG5756 - chr2R_11_18105001 chr2R_18105001 RAL-304_100b 1553 chr2R 18111653 18111716 chr2R 18115546 18115601 F-element 13 3887 3.0 1.5 2.2 4.1 3948 chr2R 18111653 intergenic not near genes chr2R 18113627 intergenic not near genes chr2R 18115601 intergenic not near genes chr2R_13_18110001 chr2R_18110001 RAL-304_100b 1554 chr2R 18144822 18144873 chr2R 18144969 18144992 9 138 101.0 93.0 97.0 0.1 170 chr2R 18144822 exon pAbp + chr2R 18144907 intron pAbp + chr2R 18144992 exon pAbp + chr2R_9_18140001 chr2R_18140001 RAL-304_100b 1555 chr2R 18195187 18195225 chr2R 18195291 18195337 12 105 10.0 14.0 12.0 0.9 150 chr2R 18195187 intergenic not near genes chr2R 18195262 intergenic not near genes chr2R 18195337 intergenic not near genes chr2R_12_18195001 chr2R_18195001 RAL-304_100b 1556 chr2R 18216408 18216453 chr2R 18216513 18216562 32 108 13.5 11.0 12.2 2.4 154 chr2R 18216408 intergenic not near genes chr2R 18216485 intergenic not near genes chr2R 18216562 intergenic not near genes chr2R_32_18215001 chr2R_18215001 RAL-304_100b 1557 chr2R 18245619 18245635 chr2R 18245715 18245736 11 100 13.5 12.0 12.8 0.8 117 chr2R 18245619 intergenic not near genes chr2R 18245678 intergenic CR44420 - chr2R 18245736 intergenic CR44420 - chr2R_11_18245001 chr2R_18245001 RAL-304_100b 1558 chr2R 18245639 18245654 chr2R 18245710 18245755 10 97 8.0 10.0 9.0 1.0 116 chr2R 18245639 intergenic CR44420 - chr2R 18245697 intergenic CR44420 - chr2R 18245755 intergenic CR44420 - chr2R_10_18245001 chr2R_18245001 RAL-304_100b 1559 chr2R 18260173 18260209 chr2R 18260345 18260366 32 171 12.5 10.0 11.2 2.6 193 chr2R 18260173 intergenic not near genes chr2R 18260270 intergenic not near genes chr2R 18260366 intergenic not near genes chr2R_32_18260001 chr2R_18260001 RAL-304_100b 1560 chr2R 18308258 18308319 chr2R 18308389 18308450 62 128 16.0 11.0 13.5 4.3 192 chr2R 18308258 intron sbb - chr2R 18308354 intron sbb - chr2R 18308450 intron sbb - chr2R_62_18305001 chr2R_18305001 RAL-304_100b 1561 chr2R 18312345 18312377 chr2R 18312465 18312502 27 122 27.5 13.0 20.2 1.3 157 chr2R 18312345 intron sbb - chr2R 18312424 intron sbb - chr2R 18312502 intron sbb - chr2R_27_18310001 chr2R_18310001 RAL-304_100b 1562 chr2R 18312378 18312395 chr2R 18312464 18312520 33 119 18.5 13.0 15.8 2.0 142 chr2R 18312378 intron sbb - chr2R 18312449 intron sbb - chr2R 18312520 intron sbb - chr2R_33_18310001 chr2R_18310001 RAL-304_100b 1563 chr2R 18320610 18320627 chr2R 18320763 18320780 11 152 27.0 5.5 16.2 0.6 170 chr2R 18320610 intron sbb - chr2R 18320695 intron sbb - chr2R 18320780 intron sbb - chr2R_11_18320001 chr2R_18320001 RAL-304_100b 1564 chr2R 18322289 18322350 chr2R 18322394 18322455 55 98 13.0 7.0 10.0 5.0 166 chr2R 18322289 intron sbb - chr2R 18322372 intron sbb - chr2R 18322455 intron sbb - chr2R_55_18320001 chr2R_18320001 RAL-304_100b 1565 chr2R 18358368 18358392 chr2R 18372605 18372629 roo 20 14236 32.5 16.5 24.5 0.8 14261 chr2R 18358368 intergenic not near genes chr2R 18365498 intergenic not near genes chr2R 18372629 intergenic not near genes chr2R_20_18365001 chr2R_18365001 RAL-304_100b 1566 chr2R 18358393 18358421 chr2R 18372599 18372648 roo 21 14230 18.5 15.5 17.0 1.2 14255 chr2R 18358393 intergenic not near genes chr2R 18365520 intergenic not near genes chr2R 18372648 intergenic not near genes chr2R_21_18365001 chr2R_18365001 RAL-304_100b 1567 chr2R 18374746 18374786 chr2R 18374841 18374857 10 92 4.5 26.0 15.2 0.6 111 chr2R 18374746 intergenic not near genes chr2R 18374802 intergenic not near genes chr2R 18374857 intergenic not near genes chr2R_10_18370001 chr2R_18370001 RAL-304_100b 1568 chr2R 18376717 18376763 chr2R 18376832 18376878 39 113 7.0 16.5 11.8 3.0 161 chr2R 18376717 intergenic not near genes chr2R 18376798 intergenic not near genes chr2R 18376878 intergenic not near genes chr2R_39_18375001 chr2R_18375001 RAL-304_100b 1569 chr2R 18387566 18387614 chr2R 18387672 18387720 36 103 7.5 15.0 11.2 3.0 154 chr2R 18387566 intergenic IM3 + chr2R 18387643 intergenic IM3 + chr2R 18387720 intergenic IM3 + chr2R_36_18385001 chr2R_18385001 RAL-304_100b 1570 chr2R 18396065 18396120 chr2R 18396172 18396227 45 101 0.5 13.0 6.8 5.8 162 chr2R 18396065 intergenic not near genes chr2R 18396146 intergenic GstE10 - chr2R 18396227 intergenic GstE10 - chr2R_45_18395001 chr2R_18395001 RAL-304_100b 1571 chr2R 18402477 18402528 chr2R 18402590 18402640 46 111 9.0 22.0 15.5 2.8 163 chr2R 18402477 intergenic not near genes chr2R 18402558 intergenic not near genes chr2R 18402640 intergenic not near genes chr2R_46_18400001 chr2R_18400001 RAL-304_100b 1572 chr2R 18405729 18405784 chr2R 18405835 18405889 11 105 8.5 0.0 4.2 2.1 160 chr2R 18405729 intergenic GstE6 +,GstE5 + chr2R 18405809 intergenic GstE6 +,GstE5 + chr2R 18405889 intergenic GstE6 + chr2R_11_18405001 chr2R_18405001 RAL-304_100b 1573 chr2R 18435811 18435857 chr2R 18435913 18435952 33 100 12.0 5.5 8.8 3.4 141 chr2R 18435811 intron CG30118 - chr2R 18435882 intron CG30118 - chr2R 18435952 intron CG30118 - chr2R_33_18435001 chr2R_18435001 RAL-304_100b 1574 chr2R 6696730 6696746 chr2R 18443420 18443421 4 11746684 85.5 50.0 67.8 0.1 11746691 chr2R 6696730 intergenic Rab2 +,Mob4 - chr2R 12570076 intergenic Ak6 -,stil + chr2R 18443421 intron slim + chr2R_4_12570001 chr2R_12570001 RAL-304_100b 1575 chr2R 18463675 18463686 chr2R 18463801 18463812 8 126 20.5 13.0 16.8 0.4 137 chr2R 18463675 intron CG30116 - chr2R 18463744 intron CG30116 - chr2R 18463812 intron CG30116 - chr2R_8_18460001 chr2R_18460001 RAL-304_100b 1576 chr2R 18483007 18483058 chr2R 18483266 18483287 51 256 11.5 13.5 12.5 3.8 280 chr2R 18483007 intron CG30116 - chr2R 18483147 intron CG30116 - chr2R 18483287 intron CG30116 - chr2R_51_18480001 chr2R_18480001 RAL-304_100b 1577 chr2R 18487813 18487854 chr2R 18495289 18495349 blood 25 7478 2.0 13.5 7.8 2.8 7536 chr2R 18487813 intron CG30116 - chr2R 18491581 intron CG30116 - chr2R 18495349 intron CG30116 - chr2R_25_18490001 chr2R_18490001 RAL-304_100b 1578 chr2R 18526568 18526572 chr2R 18526675 18526679 7 107 63.5 24.5 44.0 0.2 111 chr2R 18526568 intergenic CG43066 + chr2R 18526624 intergenic CG43066 + chr2R 18526679 intergenic CG43066 + chr2R_7_18525001 chr2R_18525001 RAL-304_100b 1579 chr2R 18526573 18526624 chr2R 18526672 18526716 76 103 25.0 23.0 24.0 3.0 143 chr2R 18526573 intergenic CG43066 + chr2R 18526644 intergenic CG43066 + chr2R 18526716 intergenic CG43066 + chr2R_76_18525001 chr2R_18525001 RAL-304_100b 1580 chr2R 18524101 18524117 chr2R 18526754 18526770 13 2654 121.0 78.5 99.8 0.1 2669 chr2R 18524101 intron CG43066 + chr2R 18525436 3` UTR CG43066 + chr2R 18526770 intergenic CG43066 + chr2R_13_18525001 chr2R_18525001 RAL-304_100b 1581 chr2R 18524098 18524157 chr2R 18526772 18526810 39 2657 150.5 90.5 120.5 0.3 2712 chr2R 18524098 intron CG43066 + chr2R 18525454 3` UTR CG43066 + chr2R 18526810 intergenic CG43066 + chr2R_39_18525001 chr2R_18525001 RAL-304_100b 1582 chr2R 18575772 18575810 chr2R 18581985 18582005 3S18 26 6203 19.5 9.0 14.2 1.7 6233 chr2R 18575772 intron GEFmeso - chr2R 18578888 intron GEFmeso - chr2R 18582005 intron GEFmeso - chr2R_26_18575001 chr2R_18575001 RAL-304_100b 1583 chr2R 18575811 18575829 chr2R 18581984 18582041 3S18 40 6200 10.5 9.0 9.8 3.7 6230 chr2R 18575811 intron GEFmeso - chr2R 18578926 intron GEFmeso - chr2R 18582041 intron GEFmeso - chr2R_40_18575001 chr2R_18575001 RAL-304_100b 1584 chr2R 18590840 18590901 chr2R 18600017 18600077 roo 74 9174 16.5 15.0 15.8 4.4 9237 chr2R 18590840 intron GEFmeso - chr2R 18595458 intron GEFmeso - chr2R 18600077 intron GEFmeso - chr2R_74_18595001 chr2R_18595001 RAL-304_100b 1585 chr2R 18620409 18620422 chr2R 18620522 18620535 6 113 18.0 22.0 20.0 0.3 126 chr2R 18620409 intergenic Atg7 - chr2R 18620472 3` UTR Atg7 - chr2R 18620535 3` UTR Atg7 - chr2R_6_18620001 chr2R_18620001 RAL-304_100b 1586 chr2R 18646407 18646432 chr2R 18646577 18646602 21 167 9.0 19.0 14.0 1.4 195 chr2R 18646407 intron SP2637 - chr2R 18646504 intron SP2637 - chr2R 18646602 intron SP2637 - chr2R_21_18645001 chr2R_18645001 RAL-304_100b 1587 chr2R 18736764 18736779 chr2R 18736914 18736929 11 150 23.0 13.5 18.2 0.6 165 chr2R 18736764 intron Hs3st-A + chr2R 18736846 intron Hs3st-A + chr2R 18736929 intron Hs3st-A + chr2R_11_18735001 chr2R_18735001 RAL-304_100b 1588 chr2R 18738192 18738239 chr2R 18738293 18738340 26 98 1.0 8.0 4.5 4.7 148 chr2R 18738192 intron Hs3st-A + chr2R 18738266 intron Hs3st-A + chr2R 18738340 intron Hs3st-A + chr2R_26_18735001 chr2R_18735001 RAL-304_100b 1589 chr2R 18769627 18769737 chr2R 18769913 18769969 17 252 0.5 11.0 5.8 2.5 342 chr2R 18769627 intron Mctp + chr2R 18769798 intron Mctp + chr2R 18769969 intron Mctp + chr2R_17_18765001 chr2R_18765001 RAL-304_100b 1590 chr2R 18778586 18778608 chr2R 18778709 18778731 29 122 16.5 0.5 8.5 3.1 145 chr2R 18778586 intergenic not near genes chr2R 18778658 intergenic not near genes chr2R 18778731 intergenic not near genes chr2R_29_18775001 chr2R_18775001 RAL-304_100b 1591 chr2R 18835872 18835911 chr2R 18835979 18836015 17 105 12.0 0.0 6.0 2.4 143 chr2R 18835872 intron CG15083 + chr2R 18835944 intron CG15083 + chr2R 18836015 intron CG15083 + chr2R_17_18835001 chr2R_18835001 RAL-304_100b 1592 chr2R 18862290 18862409 chr2R 18862397 18862519 16 117 0.0 0.0 0.0 16.0 229 chr2R 18862290 intergenic Jheh3 - chr2R 18862404 intergenic Jheh3 -,CG43069 + chr2R 18862519 intergenic CG43069 +,Jheh3 - chr2R_16_18860001 chr2R_18860001 RAL-304_100b 1593 chr2R 18871621 18871680 chr2R 18871731 18871750 42 105 21.5 0.0 10.8 3.6 129 chr2R 18871621 intergenic not near genes chr2R 18871686 intergenic not near genes chr2R 18871750 intergenic not near genes chr2R_42_18870001 chr2R_18870001 RAL-304_100b 1594 chr2R 18877366 18877370 chr2R 18877577 18877581 5 211 14.0 7.5 10.8 0.4 215 chr2R 18877366 intergenic not near genes chr2R 18877474 intergenic not near genes chr2R 18877581 intergenic not near genes chr2R_5_18875001 chr2R_18875001 RAL-304_100b 1595 chr2R 18877372 18877424 chr2R 18877576 18877626 21 207 13.0 7.5 10.2 1.9 254 chr2R 18877372 intergenic not near genes chr2R 18877499 intergenic not near genes chr2R 18877626 intergenic not near genes chr2R_21_18875001 chr2R_18875001 RAL-304_100b 1596 chr2R 18888177 18888232 chr2R 18888388 18888443 37 209 9.5 10.5 10.0 3.4 266 chr2R 18888177 intron sano + chr2R 18888310 intron sano + chr2R 18888443 intron sano + chr2R_37_18885001 chr2R_18885001 RAL-304_100b 1597 chr2R 18924260 18924302 chr2R 18924350 18924399 45 101 9.5 14.5 12.0 3.5 139 chr2R 18924260 intron sano + chr2R 18924330 intron sano + chr2R 18924399 intron sano + chr2R_45_18920001 chr2R_18920001 RAL-304_100b 1598 chr2R 18926482 18926526 chr2R 18926594 18926638 21 110 11.0 5.0 8.0 2.3 156 chr2R 18926482 intron sano + chr2R 18926560 intron sano + chr2R 18926638 intron sano + chr2R_21_18925001 chr2R_18925001 RAL-304_100b 1599 chr2R 18951195 18951247 chr2R 18951444 18951496 22 244 9.5 8.5 9.0 2.2 301 chr2R 18951195 intron sano + chr2R 18951346 intron sano + chr2R 18951496 intron sano + chr2R_22_18950001 chr2R_18950001 RAL-304_100b 1600 chr2R 18988995 18989046 chr2R 18989098 18989147 23 101 8.5 7.5 8.0 2.6 152 chr2R 18988995 intron tn + chr2R 18989071 intron tn + chr2R 18989147 intron tn + chr2R_23_18985001 chr2R_18985001 RAL-304_100b 1601 chr2R 19026036 19026061 chr2R 19026187 19026212 25 149 18.0 12.0 15.0 1.6 176 chr2R 19026036 intron 5-HT1B - chr2R 19026124 intron 5-HT1B - chr2R 19026212 intron 5-HT1B - chr2R_25_19025001 chr2R_19025001 RAL-304_100b 1602 chr2R 19069886 19069943 chr2R 19069993 19070050 48 102 16.0 11.0 13.5 3.3 164 chr2R 19069886 intron 5-HT1A + chr2R 19069968 intron 5-HT1A + chr2R 19070050 intron 5-HT1A + chr2R_48_19065001 chr2R_19065001 RAL-304_100b 1603 chr2R 19078541 19078566 chr2R 19078655 19078680 10 113 6.5 22.0 14.2 0.7 139 chr2R 19078541 intron 5-HT1A + chr2R 19078610 intron 5-HT1A + chr2R 19078680 intron 5-HT1A + chr2R_10_19075001 chr2R_19075001 RAL-304_100b 1604 chr2R 10686310 10686312 chr2R 19078953 19078955 4 8392643 50.0 23.0 36.5 0.1 8392645 chr2R 10686310 intron stan + chr2R 14882632 exon Cyp6a20 + chr2R 19078955 intron 5-HT1A + chr2R_4_14880001 chr2R_14880001 RAL-304_100b 1605 chr2R 19183320 19183374 chr2R 19183421 19183475 62 97 20.5 14.0 17.2 3.4 155 chr2R 19183320 intron hppy + chr2R 19183398 intron hppy + chr2R 19183475 intron hppy + chr2R_62_19180001 chr2R_19180001 RAL-304_100b 1606 chr2R 19183618 19183675 chr2R 19183727 19183774 56 103 15.5 21.0 18.2 2.9 156 chr2R 19183618 intron hppy + chr2R 19183696 intron hppy + chr2R 19183774 intron hppy + chr2R_56_19180001 chr2R_19180001 RAL-304_100b 1607 chr2R 19209171 19209182 chr2R 19209426 19209437 10 255 31.5 12.5 22.0 0.4 266 chr2R 19209171 intron hppy + chr2R 19209304 intron hppy + chr2R 19209437 intron hppy + chr2R_10_19205001 chr2R_19205001 RAL-304_100b 1608 chr2R 19209186 19209221 chr2R 19209421 19209474 40 251 14.0 11.5 12.8 2.9 288 chr2R 19209186 intron hppy + chr2R 19209330 intron hppy + chr2R 19209474 intron hppy + chr2R_40_19205001 chr2R_19205001 RAL-304_100b 1609 chr2R 19221691 19221749 chr2R 19221795 19221836 39 96 14.5 1.0 7.8 4.4 145 chr2R 19221691 intron hppy + chr2R 19221764 intron hppy + chr2R 19221836 intron hppy + chr2R_39_19220001 chr2R_19220001 RAL-304_100b 1610 chr2R 19247430 19247472 chr2R 19247565 19247615 23 135 1.5 1.5 1.5 9.2 185 chr2R 19247430 intergenic not near genes chr2R 19247522 intergenic not near genes chr2R 19247615 intergenic not near genes chr2R_23_19245001 chr2R_19245001 RAL-304_100b 1611 chr2R 19251325 19251383 chr2R 19251447 19251488 41 118 13.5 13.0 13.2 2.9 163 chr2R 19251325 exon CG33454 - chr2R 19251406 exon CG33454 - chr2R 19251488 exon CG33454 - chr2R_41_19250001 chr2R_19250001 RAL-304_100b 1612 chr2R 19253070 19253127 chr2R 19253185 19253242 29 115 4.5 4.5 4.5 5.3 172 chr2R 19253070 exon CG33453 - chr2R 19253156 exon CG33453 - chr2R 19253242 intergenic CG33453 - chr2R_29_19250001 chr2R_19250001 RAL-304_100b 1613 chr2R 19284414 19284462 chr2R 19284520 19284537 37 102 14.0 13.0 13.5 2.6 123 chr2R 19284414 intergenic CG10476 -,CG11906 - chr2R 19284476 intergenic CG10476 - chr2R 19284537 intergenic CG10476 - chr2R_37_19280001 chr2R_19280001 RAL-304_100b 1614 chr2R 19295696 19295717 chr2R 19295802 19295823 6 106 25.0 23.0 24.0 0.2 127 chr2R 19295696 intron Tab2 + chr2R 19295760 intron Tab2 + chr2R 19295823 intron Tab2 + chr2R_6_19295001 chr2R_19295001 RAL-304_100b 1615 chr2R 19295718 19295740 chr2R 19295798 19295846 16 92 14.0 21.5 17.8 0.9 128 chr2R 19295718 intron Tab2 + chr2R 19295782 intron Tab2 + chr2R 19295846 intron Tab2 + chr2R_16_19295001 chr2R_19295001 RAL-304_100b 1616 chr2R 19359017 19359031 chr2R 19359125 19359139 17 108 11.5 15.5 13.5 1.2 122 chr2R 19359017 intron CG11961 + chr2R 19359078 intron CG11961 + chr2R 19359139 intron CG11961 + chr2R_17_19355001 chr2R_19355001 RAL-304_100b 1617 chr2R 19359033 19359071 chr2R 19359123 19359179 44 105 8.0 15.5 11.8 3.4 146 chr2R 19359033 intron CG11961 + chr2R 19359106 intron CG11961 + chr2R 19359179 intron CG11961 + chr2R_44_19355001 chr2R_19355001 RAL-304_100b 1618 chr2R 19363167 19363207 chr2R 19363268 19363271 6 95 6.0 5.0 5.5 0.9 104 chr2R 19363167 intergenic CG10051 + chr2R 19363219 intergenic CG10051 + chr2R 19363271 intergenic CG10051 + chr2R_6_19360001 chr2R_19360001 RAL-304_100b 1619 chr2R 19384931 19384935 chr2R 19385045 19385049 7 114 15.0 0.0 7.5 0.8 118 chr2R 19384931 3` UTR CG10073 + chr2R 19384990 intergenic CG10073 + chr2R 19385049 intergenic CG10073 + chr2R_7_19380001 chr2R_19380001 RAL-304_100b 1620 chr2R 19504324 19504382 chr2R 19504434 19504492 38 106 13.0 14.5 13.8 2.6 168 chr2R 19504324 3` UTR CG11007 + chr2R 19504408 3` UTR CG11007 + chr2R 19504492 3` UTR CG11007 + chr2R_38_19500001 chr2R_19500001 RAL-304_100b 1621 chr2R 19551145 19551154 chr2R 19551247 19551256 6 102 21.0 13.5 17.2 0.3 111 chr2R 19551145 intron sm - chr2R 19551200 intron sm - chr2R 19551256 intron sm - chr2R_6_19550001 chr2R_19550001 RAL-304_100b 1622 chr2R 19551158 19551195 chr2R 19551246 19551297 21 98 7.0 13.5 10.2 1.9 139 chr2R 19551158 intron sm - chr2R 19551228 intron sm - chr2R 19551297 intron sm - chr2R_21_19550001 chr2R_19550001 RAL-304_100b 1623 chr2R 19570113 19570170 chr2R 19570222 19570278 57 104 15.5 16.0 15.8 3.4 165 chr2R 19570113 intron sm - chr2R 19570196 intron sm - chr2R 19570278 intron sm - chr2R_57_19570001 chr2R_19570001 RAL-304_100b 1624 chr2R 19588724 19588781 chr2R 19588827 19588884 28 103 14.5 13.0 13.8 1.9 160 chr2R 19588724 intron sm - chr2R 19588804 intron sm - chr2R 19588884 intron sm - chr2R_28_19585001 chr2R_19585001 RAL-304_100b 1625 chr2R 19603949 19604006 chr2R 19604058 19604115 21 106 7.0 9.5 8.2 2.3 166 chr2R 19603949 intron sm - chr2R 19604032 intron sm - chr2R 19604115 intron sm - chr2R_21_19600001 chr2R_19600001 RAL-304_100b 1626 chr2R 13468972 13469009 chr2R 19617238 19617239 copia 4 6148251 0.5 72.0 36.2 0.1 6148267 chr2R 13468972 intron arr - chr2R 16543106 intergenic not near genes chr2R 19617239 intron sm - chr2R_4_16540001 chr2R_16540001 RAL-304_100b 1627 chr2R 19697916 19697965 chr2R 19698054 19698103 44 136 11.0 20.0 15.5 2.7 187 chr2R 19697916 intron Obp56a + chr2R 19698010 intron Obp56a + chr2R 19698103 exon Obp56a + chr2R_44_19695001 chr2R_19695001 RAL-304_100b 1628 chr2R 19698566 19698578 chr2R 19698677 19698689 13 111 26.5 8.5 17.5 0.7 123 chr2R 19698566 intergenic Obp56a +,Obp56b - chr2R 19698628 intergenic Obp56b -,Obp56a + chr2R 19698689 intergenic Obp56b -,Obp56a + chr2R_13_19695001 chr2R_19695001 RAL-304_100b 1629 chr2R 19698580 19698618 chr2R 19698672 19698729 17 108 5.5 7.0 6.2 2.4 149 chr2R 19698580 intergenic Obp56a +,Obp56b - chr2R 19698654 intergenic Obp56b -,Obp56a + chr2R 19698729 3` UTR Obp56b - chr2R_17_19695001 chr2R_19695001 RAL-304_100b 1630 chr2R 19701491 19701546 chr2R 19701600 19701653 38 102 5.5 6.5 6.0 5.4 162 chr2R 19701491 intergenic Obp56c - chr2R 19701572 intergenic Obp56c - chr2R 19701653 intergenic not near genes chr2R_38_19700001 chr2R_19700001 RAL-304_100b 1631 chr2R 19715831 19715841 chr2R 19723325 19723335 blood 6 7494 43.0 19.5 31.2 0.2 7504 chr2R 19715831 intergenic not near genes chr2R 19719583 intergenic not near genes chr2R 19723335 intergenic not near genes chr2R_6_19715001 chr2R_19715001 RAL-304_100b 1632 chr2R 19715842 19715857 chr2R 19723324 19723351 blood 21 7491 31.5 19.0 25.2 0.8 7509 chr2R 19715842 intergenic not near genes chr2R 19719596 intergenic not near genes chr2R 19723351 intergenic not near genes chr2R_21_19715001 chr2R_19715001 RAL-304_100b 1633 chr2R 19776567 19776630 chr2R 19779915 19779940 jockey 36 3342 7.0 9.5 8.2 3.9 3373 chr2R 19776567 intergenic not near genes chr2R 19778254 intergenic not near genes chr2R 19779940 intergenic not near genes chr2R_36_19775001 chr2R_19775001 RAL-304_100b 1634 chr2R 19801998 19802055 chr2R 19802235 19802292 13 235 10.0 3.5 6.8 1.7 294 chr2R 19801998 intergenic not near genes chr2R 19802145 intergenic not near genes chr2R 19802292 intergenic not near genes chr2R_13_19800001 chr2R_19800001 RAL-304_100b 1635 chr2R 19810649 19810656 chr2R 19810756 19810763 7 108 16.0 18.5 17.2 0.4 114 chr2R 19810649 intergenic not near genes chr2R 19810706 intergenic not near genes chr2R 19810763 intergenic not near genes chr2R_7_19810001 chr2R_19810001 RAL-304_100b 1636 chr2R 19816083 19816087 chr2R 19816218 19816218 4 136 0.0 0.0 0.0 4.0 135 chr2R 19816083 3` UTR Obp56h + chr2R 19816150 3` UTR Obp56h + chr2R 19816218 intergenic Obp56h + chr2R_4_19815001 chr2R_19815001 RAL-304_100b 1637 chr2R 19847114 19847135 chr2R 19847217 19847226 21 101 35.5 0.0 17.8 1.1 112 chr2R 19847114 intergenic not near genes chr2R 19847170 intergenic not near genes chr2R 19847226 intergenic not near genes chr2R_21_19845001 chr2R_19845001 RAL-304_100b 1638 chr2R 19847138 19847238 chr2R 19847216 19847358 29 128 0.0 0.0 0.0 29.0 220 chr2R 19847138 intergenic not near genes chr2R 19847248 intergenic not near genes chr2R 19847358 intergenic not near genes chr2R_29_19845001 chr2R_19845001 RAL-304_100b 1639 chr2R 19914824 19914849 chr2R 19922261 19922271 mdg1 28 7435 22.5 15.5 19.0 1.4 7447 chr2R 19914824 intergenic not near genes chr2R 19918548 intergenic not near genes chr2R 19922271 intergenic not near genes chr2R_28_19915001 chr2R_19915001 RAL-304_100b 1640 chr2R 19914850 19914852 chr2R 19922260 19922286 mdg1 4 7426 21.0 15.0 18.0 0.2 7436 chr2R 19914850 intergenic not near genes chr2R 19918568 intergenic not near genes chr2R 19922286 intergenic not near genes chr2R_4_19915001 chr2R_19915001 RAL-304_100b 1641 chr2R 19914855 19914876 chr2R 19922256 19922313 mdg1 18 7434 12.5 11.5 12.0 1.4 7458 chr2R 19914855 intergenic not near genes chr2R 19918584 intergenic not near genes chr2R 19922313 intergenic not near genes chr2R_18_19915001 chr2R_19915001 RAL-304_100b 1642 chr2R 19957410 19957418 chr2R 19962637 19962645 copia 4 5226 39.0 14.5 26.8 0.1 5235 chr2R 19957410 intergenic CG44623 + chr2R 19960028 intergenic not near genes chr2R 19962645 intergenic not near genes chr2R_4_19960001 chr2R_19960001 RAL-304_100b 1643 chr2R 19957420 19957463 chr2R 19962631 19962678 copia 50 5218 13.0 12.0 12.5 3.7 5258 chr2R 19957420 intergenic CG44623 + chr2R 19960049 intergenic not near genes chr2R 19962678 intergenic not near genes chr2R_50_19960001 chr2R_19960001 RAL-304_100b 1644 chr2R 19987779 19987838 chr2R 19987887 19987945 17 106 8.5 8.0 8.2 1.8 166 chr2R 19987779 intergenic not near genes chr2R 19987862 intergenic not near genes chr2R 19987945 intergenic not near genes chr2R_17_19985001 chr2R_19985001 RAL-304_100b 1645 chr2R 20042180 20042211 chr2R 20042308 20042318 5 124 9.5 4.5 7.0 0.6 138 chr2R 20042180 intergenic not near genes chr2R 20042249 intergenic not near genes chr2R 20042318 intergenic not near genes chr2R_5_20040001 chr2R_20040001 RAL-304_100b 1646 chr2R 20069217 20069277 chr2R 20071872 20071916 opus 17 2652 0.0 17.5 8.8 1.7 2699 chr2R 20069217 intergenic not near genes chr2R 20070566 intergenic not near genes chr2R 20071916 intergenic not near genes chr2R_17_20070001 chr2R_20070001 RAL-304_100b 1647 chr2R 20087976 20088027 chr2R 20088102 20088160 1360 10 129 10.0 1.0 5.5 1.5 184 chr2R 20087976 intergenic not near genes chr2R 20088068 intergenic not near genes chr2R 20088160 intergenic not near genes chr2R_10_20085001 chr2R_20085001 RAL-304_100b 1648 chr2R 20192478 20192537 chr2R 20192584 20192643 31 104 9.0 9.5 9.2 3.0 165 chr2R 20192478 intergenic not near genes chr2R 20192560 intergenic not near genes chr2R 20192643 intergenic not near genes chr2R_31_20190001 chr2R_20190001 RAL-304_100b 1649 chr2R 20219876 20219912 chr2R 20219985 20220021 16 109 7.5 10.5 9.0 1.6 145 chr2R 20219876 intergenic not near genes chr2R 20219948 intergenic not near genes chr2R 20220021 intergenic not near genes chr2R_16_20215001 chr2R_20215001 RAL-304_100b 1650 chr2R 20271818 20271877 chr2R 20271930 20271989 41 107 14.5 7.5 11.0 3.4 171 chr2R 20271818 3` UTR CG10444 - chr2R 20271904 3` UTR CG10444 - chr2R 20271989 3` UTR CG10444 - chr2R_41_20270001 chr2R_20270001 RAL-304_100b 1651 chr2R 20280807 20280861 chr2R 20281024 20281079 44 219 91.5 113.0 102.2 0.4 272 chr2R 20280807 intron CG9090 - chr2R 20280943 intron CG9090 - chr2R 20281079 5` UTR CG9090 - chr2R_44_20280001 chr2R_20280001 RAL-304_100b 1652 chr2R 20321203 20321234 chr2R 20321319 20321350 21 114 33.5 11.0 22.2 0.9 147 chr2R 20321203 intron CG8920 + chr2R 20321276 intron CG8920 + chr2R 20321350 intron CG8920 + chr2R_21_20320001 chr2R_20320001 RAL-304_100b 1653 chr2R 20321235 20321263 chr2R 20321316 20321374 20 108 14.5 10.5 12.5 1.5 139 chr2R 20321235 intron CG8920 + chr2R 20321304 intron CG8920 + chr2R 20321374 intron CG8920 + chr2R_20_20320001 chr2R_20320001 RAL-304_100b 1654 chr2R 20338734 20338745 chr2R 20338839 20338850 6 105 14.0 0.0 7.0 0.8 116 chr2R 20338734 intergenic not near genes chr2R 20338792 intergenic not near genes chr2R 20338850 intergenic not near genes chr2R_6_20335001 chr2R_20335001 RAL-304_100b 1655 chr2R 20338748 20338791 chr2R 20338837 20338896 10 103 6.0 0.0 3.0 2.5 148 chr2R 20338748 intergenic not near genes chr2R 20338822 intergenic not near genes chr2R 20338896 intergenic not near genes chr2R_10_20335001 chr2R_20335001 RAL-304_100b 1656 chr2R 20340748 20340776 chr2R 20340861 20340886 6 111 8.0 7.0 7.5 0.7 138 chr2R 20340748 intergenic not near genes chr2R 20340817 intergenic not near genes chr2R 20340886 intergenic not near genes chr2R_6_20340001 chr2R_20340001 RAL-304_100b 1657 chr2R 20368490 20368496 chr2R 20377678 20377684 roo 4 9188 26.0 18.5 22.2 0.2 9194 chr2R 20368490 intergenic not near genes chr2R 20373087 intergenic not near genes chr2R 20377684 intergenic not near genes chr2R_4_20370001 chr2R_20370001 RAL-304_100b 1658 chr2R 20379135 20379140 chr2R 20379243 20379248 5 108 15.5 13.5 14.5 0.3 113 chr2R 20379135 intergenic not near genes chr2R 20379192 intergenic not near genes chr2R 20379248 intergenic not near genes chr2R_5_20375001 chr2R_20375001 RAL-304_100b 1659 chr2R 20395147 20395183 chr2R 20395250 20395286 27 100 11.0 6.0 8.5 2.8 139 chr2R 20395147 intergenic not near genes chr2R 20395216 intergenic not near genes chr2R 20395286 intergenic not near genes chr2R_27_20395001 chr2R_20395001 RAL-304_100b 1660 chr2R 20401217 20401275 chr2R 20401324 20401372 46 103 8.0 11.0 9.5 4.4 155 chr2R 20401217 intergenic not near genes chr2R 20401294 intergenic not near genes chr2R 20401372 intergenic not near genes chr2R_46_20400001 chr2R_20400001 RAL-304_100b 1661 chr2R 20408595 20408649 chr2R 20408698 20408752 44 99 22.5 16.5 19.5 2.1 157 chr2R 20408595 intergenic not near genes chr2R 20408674 intergenic not near genes chr2R 20408752 intergenic not near genes chr2R_44_20405001 chr2R_20405001 RAL-304_100b 1662 chr2R 20437786 20437833 chr2R 20437891 20437938 50 102 13.0 16.0 14.5 3.2 152 chr2R 20437786 intron CG12484 + chr2R 20437862 intron CG12484 + chr2R 20437938 intron CG12484 + chr2R_50_20435001 chr2R_20435001 RAL-304_100b 1663 chr2R 20454774 20454832 chr2R 20454880 20454938 51 103 6.0 14.0 10.0 4.6 164 chr2R 20454774 intron CG12484 + chr2R 20454856 intron CG12484 + chr2R 20454938 intron CG12484 + chr2R_51_20450001 chr2R_20450001 RAL-304_100b 1664 chr2R 20468831 20468884 chr2R 20468940 20468943 39 105 12.5 3.0 7.8 4.4 112 chr2R 20468831 exon CG12484 + chr2R 20468887 intron CG12484 + chr2R 20468943 intron CG12484 + chr2R_39_20465001 chr2R_20465001 RAL-304_100b 1665 chr2R 20470976 20470998 chr2R 20471078 20471080 7 96 29.0 12.0 20.5 0.3 104 chr2R 20470976 intron CG12484 + chr2R 20471028 intron CG12484 + chr2R 20471080 intron CG12484 + chr2R_7_20470001 chr2R_20470001 RAL-304_100b 1666 chr2R 20485276 20485298 chr2R 20485381 20485388 12 101 38.0 47.0 42.5 0.3 112 chr2R 20485276 intergenic not near genes chr2R 20485332 intergenic not near genes chr2R 20485388 intergenic not near genes chr2R_12_20485001 chr2R_20485001 RAL-304_100b 1667 chr2R 20504740 20504795 chr2R 20504842 20504882 18 100 2.5 0.0 1.2 8.2 142 chr2R 20504740 exon Obp57b + chr2R 20504811 3` UTR Obp57b + chr2R 20504882 3` UTR Obp57b + chr2R_18_20500001 chr2R_20500001 RAL-304_100b 1668 chr2R 20533888 20533924 chr2R 20534014 20534052 10 127 13.5 0.0 6.8 1.3 164 chr2R 20533888 3` UTR CG30154 + chr2R 20533970 intergenic CG30154 +,CG18067 + chr2R 20534052 intergenic CG30154 +,CG18067 + chr2R_10_20530001 chr2R_20530001 RAL-304_100b 1669 chr2R 20533927 20533946 chr2R 20534012 20534074 11 124 8.0 0.0 4.0 2.2 147 chr2R 20533927 3` UTR CG30154 + chr2R 20534000 intergenic CG30154 +,CG18067 + chr2R 20534074 intergenic CG30154 +,CG18067 + chr2R_11_20530001 chr2R_20530001 RAL-304_100b 1670 chr2R 20555314 20555361 chr2R 20555430 20555478 14 115 7.0 13.5 10.2 1.2 164 chr2R 20555314 intergenic not near genes chr2R 20555396 intergenic not near genes chr2R 20555478 intergenic not near genes chr2R_14_20555001 chr2R_20555001 RAL-304_100b 1671 chr2R 20568388 20568457 chr2R 20568491 20568562 27 103 0.0 0.0 0.0 27.0 174 chr2R 20568388 intron qsm - chr2R 20568475 intron qsm - chr2R 20568562 intron qsm - chr2R_27_20565001 chr2R_20565001 RAL-304_100b 1672 chr2R 20572568 20572585 chr2R 20572683 20572700 11 113 9.0 21.0 15.0 0.7 132 chr2R 20572568 intron qsm - chr2R 20572634 intron qsm - chr2R 20572700 intron qsm - chr2R_11_20570001 chr2R_20570001 RAL-304_100b 1673 chr2R 20577069 20577096 chr2R 20577177 20577204 22 107 0.5 0.0 0.2 18.3 135 chr2R 20577069 intron qsm - chr2R 20577136 intron qsm - chr2R 20577204 intron qsm - chr2R_22_20575001 chr2R_20575001 RAL-304_100b 1674 chr2R 20592554 20592602 chr2R 20592660 20592708 31 100 8.0 11.5 9.8 2.9 154 chr2R 20592554 intron bl + chr2R 20592631 intron bl + chr2R 20592708 intron bl + chr2R_31_20590001 chr2R_20590001 RAL-304_100b 1675 chr2R 10366149 10366157 chr2R 20602731 20602732 4 10236579 69.5 74.0 71.8 0.1 10236583 chr2R 10366149 intron CG42732 - chr2R 15484440 intergenic not near genes chr2R 20602732 intron bl + chr2R_4_15480001 chr2R_15480001 RAL-304_100b 1676 chr2R 20671174 20671233 chr2R 20671289 20671332 28 104 12.5 0.5 6.5 3.7 158 chr2R 20671174 intergenic CG30152 +,exu - chr2R 20671253 5` UTR CG30152 + chr2R 20671332 5` UTR CG30152 + chr2R_28_20670001 chr2R_20670001 RAL-304_100b 1677 chr2R 20739418 20739435 chr2R 20744211 20744223 F-element 21 4791 55.0 22.5 38.8 0.5 4805 chr2R 20739418 intron dpr + chr2R 20741820 intron dpr + chr2R 20744223 intron dpr + chr2R_21_20740001 chr2R_20740001 RAL-304_100b 1678 chr2R 20739436 20739477 chr2R 20744209 20744240 F-element 47 4788 23.5 21.5 22.5 2.0 4804 chr2R 20739436 intron dpr + chr2R 20741838 intron dpr + chr2R 20744240 intron dpr + chr2R_47_20740001 chr2R_20740001 RAL-304_100b 1679 chr2R 20753722 20753772 chr2R 20753829 20753883 9 107 6.5 3.5 5.0 1.5 161 chr2R 20753722 3` UTR CG34202 + chr2R 20753802 intergenic CG34202 + chr2R 20753883 intergenic CG34202 + chr2R_9_20750001 chr2R_20750001 RAL-304_100b 1680 chr2R 20759788 20759817 chr2R 20759889 20759918 23 99 4.5 27.5 16.0 1.4 130 chr2R 20759788 intergenic not near genes chr2R 20759853 intergenic not near genes chr2R 20759918 intergenic not near genes chr2R_23_20755001 chr2R_20755001 RAL-304_100b 1681 chr2R 20761064 20761119 chr2R 20761193 20761249 6 129 4.5 0.5 2.5 1.7 185 chr2R 20761064 intergenic not near genes chr2R 20761156 intergenic not near genes chr2R 20761249 intergenic not near genes chr2R_6_20760001 chr2R_20760001 RAL-304_100b 1682 chr2R 20783287 20783294 chr2R 20788084 20788091 F-element 5 4797 28.5 19.0 23.8 0.2 4804 chr2R 20783287 intergenic not near genes chr2R 20785689 intergenic not near genes chr2R 20788091 intergenic CG43666 - chr2R_5_20785001 chr2R_20785001 RAL-304_100b 1683 chr2R 20783296 20783330 chr2R 20788083 20788121 F-element 17 4792 12.5 19.0 15.8 1.0 4825 chr2R 20783296 intergenic not near genes chr2R 20785708 intergenic not near genes chr2R 20788121 intergenic CG43666 - chr2R_17_20785001 chr2R_20785001 RAL-304_100b 1684 chr2R 20799135 20799195 chr2R 20799265 20799299 21 120 0.0 7.5 3.8 4.4 164 chr2R 20799135 intergenic not near genes chr2R 20799217 intergenic not near genes chr2R 20799299 intergenic not near genes chr2R_21_20795001 chr2R_20795001 RAL-304_100b 1685 chr2R 20895539 20895602 chr2R 20895647 20895710 25 105 8.0 9.0 8.5 2.6 171 chr2R 20895539 intron otp - chr2R 20895624 intron otp - chr2R 20895710 exon otp - chr2R_25_20895001 chr2R_20895001 RAL-304_100b 1686 chr2R 20901008 20901027 chr2R 20901147 20901157 18 138 38.0 16.0 27.0 0.6 149 chr2R 20901008 intron otp - chr2R 20901082 intron otp - chr2R 20901157 intron otp - chr2R_18_20900001 chr2R_20900001 RAL-304_100b 1687 chr2R 20901028 20901036 chr2R 20901146 20901177 6 129 32.0 15.5 23.8 0.2 149 chr2R 20901028 intron otp - chr2R 20901102 intron otp - chr2R 20901177 intron otp - chr2R_6_20900001 chr2R_20900001 RAL-304_100b 1688 chr2R 20901037 20901060 chr2R 20901144 20901186 30 127 16.0 14.0 15.0 1.9 149 chr2R 20901037 intron otp - chr2R 20901112 intron otp - chr2R 20901186 intron otp - chr2R_30_20900001 chr2R_20900001 RAL-304_100b 1689 chr2R 20910840 20910869 chr2R 20910943 20910984 16 108 1.0 0.0 0.5 10.7 144 chr2R 20910840 intergenic CG9235 + chr2R 20910912 intergenic CG9235 + chr2R 20910984 intergenic CG9235 + chr2R_16_20910001 chr2R_20910001 RAL-304_100b 1690 chr2R 20942356 20942374 chr2R 20942464 20942481 6 108 0.0 8.5 4.2 1.2 125 chr2R 20942356 intergenic not near genes chr2R 20942418 intergenic not near genes chr2R 20942481 intergenic not near genes chr2R_6_20940001 chr2R_20940001 RAL-304_100b 1691 chr2R 21040837 21040845 chr2R 21040938 21040946 6 101 29.0 12.5 20.8 0.3 109 chr2R 21040837 intergenic not near genes chr2R 21040892 intergenic not near genes chr2R 21040946 intergenic not near genes chr2R_6_21040001 chr2R_21040001 RAL-304_100b 1692 chr2R 21040846 21040848 chr2R 21040937 21040949 4 98 28.0 12.0 20.0 0.2 103 chr2R 21040846 intergenic not near genes chr2R 21040898 intergenic not near genes chr2R 21040949 intergenic not near genes chr2R_4_21040001 chr2R_21040001 RAL-304_100b 1693 chr2R 21040849 21040893 chr2R 21040935 21040994 38 99 13.0 12.0 12.5 2.8 145 chr2R 21040849 intergenic not near genes chr2R 21040922 intergenic not near genes chr2R 21040994 intergenic not near genes chr2R_38_21040001 chr2R_21040001 RAL-304_100b 1694 chr2R 21043630 21043686 chr2R 21043737 21043818 30 117 12.5 0.0 6.2 4.2 188 chr2R 21043630 intergenic not near genes chr2R 21043724 intergenic not near genes chr2R 21043818 intergenic not near genes chr2R_30_21040001 chr2R_21040001 RAL-304_100b 1695 chr2R 21080287 21080295 chr2R 21080390 21080398 6 103 9.5 6.0 7.8 0.7 111 chr2R 21080287 intron Treh + chr2R 21080342 intron Treh + chr2R 21080398 intron Treh + chr2R_6_21080001 chr2R_21080001 RAL-304_100b 1696 chr2R 21113454 21113486 chr2R 21113568 21113599 27 113 18.0 8.5 13.2 1.9 145 chr2R 21113454 intron ktub + chr2R 21113526 intron ktub + chr2R 21113599 intron ktub + chr2R_27_21110001 chr2R_21110001 RAL-304_100b 1697 chr2R 21151127 21151132 chr2R 21153812 21153817 opus 7 2685 0.0 24.0 12.0 0.5 2690 chr2R 21151127 intron CG30389 - chr2R 21152472 intron CG30389 - chr2R 21153817 intron CG30389 - chr2R_7_21150001 chr2R_21150001 RAL-304_100b 1698 chr2R 21151134 21151146 chr2R 21153799 21153815 opus 6 2679 0.0 15.5 7.8 0.7 2681 chr2R 21151134 intron CG30389 - chr2R 21152474 intron CG30389 - chr2R 21153815 intron CG30389 - chr2R_6_21150001 chr2R_21150001 RAL-304_100b 1699 chr2R 21217320 21217348 chr2R 21217411 21217414 5 98 4.5 0.0 2.2 1.6 94 chr2R 21217320 exon CG15661 - chr2R 21217367 5` UTR CG15661 - chr2R 21217414 5` UTR CG15661 - chr2R_5_21215001 chr2R_21215001 RAL-304_100b 1700 chr2R 21259639 21259664 chr2R 21259743 21259768 17 99 25.0 33.0 29.0 0.6 129 chr2R 21259639 intron Rgk3 + chr2R 21259704 intron Rgk3 + chr2R 21259768 intron Rgk3 + chr2R_17_21255001 chr2R_21255001 RAL-304_100b 1701 chr2R 21271116 21271120 chr2R 21271256 21271260 6 140 25.5 17.5 21.5 0.3 144 chr2R 21271116 intron Rgk3 + chr2R 21271188 intron Rgk3 + chr2R 21271260 intron Rgk3 + chr2R_6_21270001 chr2R_21270001 RAL-304_100b 1702 chr2R 21271124 21271172 chr2R 21271254 21271312 37 138 6.0 16.0 11.0 3.1 188 chr2R 21271124 intron Rgk3 + chr2R 21271218 intron Rgk3 + chr2R 21271312 intron Rgk3 + chr2R_37_21270001 chr2R_21270001 RAL-304_100b 1703 chr2R 21285407 21285436 chr2R 21285509 21285513 21 100 20.0 21.0 20.5 1.0 106 chr2R 21285407 3` UTR,3` UTR MFS16 +,CG10505 - chr2R 21285460 3` UTR,3` UTR MFS16 +,CG10505 - chr2R 21285513 3` UTR,3` UTR MFS16 +,CG10505 - chr2R_21_21285001 chr2R_21285001 RAL-304_100b 1704 chr2R 21370493 21370533 chr2R 21370625 21370665 25 130 22.0 8.0 15.0 1.6 172 chr2R 21370493 intron cv-2 - chr2R 21370579 intron cv-2 - chr2R 21370665 intron cv-2 - chr2R_25_21370001 chr2R_21370001 RAL-304_100b 1705 chr2R 21381907 21381938 chr2R 21382019 21382050 17 111 19.0 1.0 10.0 1.5 143 chr2R 21381907 intergenic not near genes chr2R 21381978 intergenic not near genes chr2R 21382050 intergenic not near genes chr2R_17_21380001 chr2R_21380001 RAL-304_100b 1706 chr2R 21408346 21408398 chr2R 21408463 21408515 29 115 15.5 0.0 7.8 3.3 169 chr2R 21408346 intron Sdc - chr2R 21408430 intron Sdc - chr2R 21408515 intron Sdc - chr2R_29_21405001 chr2R_21405001 RAL-304_100b 1707 chr2R 21417258 21417264 chr2R 21417379 21417385 7 124 25.5 0.0 12.8 0.5 127 chr2R 21417258 intron Sdc - chr2R 21417322 intron Sdc - chr2R 21417385 intron Sdc - chr2R_7_21415001 chr2R_21415001 RAL-304_100b 1708 chr2R 21508045 21508050 chr2R 21508151 21508156 7 106 21.5 12.5 17.0 0.4 111 chr2R 21508045 intron MESK2 + chr2R 21508100 intron MESK2 + chr2R 21508156 intron MESK2 + chr2R_7_21505001 chr2R_21505001 RAL-304_100b 1709 chr2R 21508052 21508092 chr2R 21508148 21508197 29 104 10.0 12.0 11.0 2.4 145 chr2R 21508052 intron MESK2 + chr2R 21508124 intron MESK2 + chr2R 21508197 intron MESK2 + chr2R_29_21505001 chr2R_21505001 RAL-304_100b 1710 chr2R 21527439 21527477 chr2R 21527545 21527553 37 103 18.5 10.0 14.2 2.4 114 chr2R 21527439 intron Egfr + chr2R 21527496 intron Egfr + chr2R 21527553 intron Egfr + chr2R_37_21525001 chr2R_21525001 RAL-304_100b 1711 chr2R 21532869 21532880 chr2R 21532972 21532983 7 103 8.5 9.0 8.8 0.7 114 chr2R 21532869 intron Egfr + chr2R 21532926 intron Egfr + chr2R 21532983 intron Egfr + chr2R_7_21530001 chr2R_21530001 RAL-304_100b 1712 chr2R 21580471 21580530 chr2R 21580579 21580634 27 103 1.5 15.0 8.2 2.9 163 chr2R 21580471 intergenic not near genes chr2R 21580552 intergenic not near genes chr2R 21580634 intergenic not near genes chr2R_27_21580001 chr2R_21580001 RAL-304_100b 1713 chr2R 21592819 21592858 chr2R 21592927 21592952 23 101 25.0 23.0 24.0 0.9 133 chr2R 21592819 intergenic not near genes chr2R 21592886 intergenic not near genes chr2R 21592952 intergenic not near genes chr2R_23_21590001 chr2R_21590001 RAL-304_100b 1714 chr2R 21671514 21671558 chr2R 21671617 21671656 39 102 17.5 14.0 15.8 2.3 142 chr2R 21671514 3` UTR NC2alpha + chr2R 21671585 3` UTR NC2alpha + chr2R 21671656 intergenic CG15676 +,NC2alpha + chr2R_39_21670001 chr2R_21670001 RAL-304_100b 1715 chr2R 21671562 21671569 chr2R 21671650 21671672 5 100 15.5 28.5 22.0 0.2 110 chr2R 21671562 3` UTR NC2alpha + chr2R 21671617 intergenic NC2alpha +,CG15676 + chr2R 21671672 intergenic CG15676 +,NC2alpha + chr2R_5_21670001 chr2R_21670001 RAL-304_100b 1716 chr2R 21671570 21671574 chr2R 21671635 21671677 4 94 16.0 21.5 18.8 0.2 107 chr2R 21671570 3` UTR NC2alpha + chr2R 21671624 intergenic NC2alpha +,CG15676 + chr2R 21671677 intergenic CG15676 +,NC2alpha + chr2R_4_21670001 chr2R_21670001 RAL-304_100b 1717 chr2R 21710913 21710966 chr2R 21711035 21711088 31 120 10.0 9.5 9.8 2.9 175 chr2R 21710913 intron,intron HmgD +,CG30403 - chr2R 21711000 intron,intron HmgD +,CG30403 - chr2R 21711088 intron,intron HmgD +,CG30403 - chr2R_31_21710001 chr2R_21710001 RAL-304_100b 1718 chr2R 21721550 21721609 chr2R 21721663 21721722 33 107 7.5 8.5 8.0 3.7 172 chr2R 21721550 intron LBR + chr2R 21721636 intron LBR + chr2R 21721722 intron LBR + chr2R_33_21720001 chr2R_21720001 RAL-304_100b 1719 chr2R 21725176 21725220 chr2R 21725277 21725321 23 99 0.5 10.0 5.2 3.7 145 chr2R 21725176 intergenic not near genes chr2R 21725248 intergenic not near genes chr2R 21725321 intergenic not near genes chr2R_23_21725001 chr2R_21725001 RAL-304_100b 1720 chr2R 21726676 21726683 chr2R 21726799 21726806 5 123 18.5 0.0 9.2 0.5 130 chr2R 21726676 intergenic not near genes chr2R 21726741 intergenic not near genes chr2R 21726806 intergenic not near genes chr2R_5_21725001 chr2R_21725001 RAL-304_100b 1721 chr2R 21738253 21738265 chr2R 21747438 21747450 roo 12 9184 32.5 14.0 23.2 0.5 9197 chr2R 21738253 intergenic not near genes chr2R 21742852 intergenic not near genes chr2R 21747450 intergenic not near genes chr2R_12_21740001 chr2R_21740001 RAL-304_100b 1722 chr2R 21738266 21738311 chr2R 21747436 21747458 roo 20 9172 12.5 12.5 12.5 1.5 9192 chr2R 21738266 intergenic not near genes chr2R 21742862 intergenic not near genes chr2R 21747458 intergenic not near genes chr2R_20_21740001 chr2R_21740001 RAL-304_100b 1723 chr2R 21753059 21753071 chr2R 21753569 21753581 roo 14 510 45.5 16.5 31.0 0.4 522 chr2R 21753059 intergenic not near genes chr2R 21753320 intergenic not near genes chr2R 21753581 intergenic not near genes chr2R_14_21750001 chr2R_21750001 RAL-304_100b 1724 chr2R 21753072 21753112 chr2R 21753567 21753622 roo 33 507 19.5 15.5 17.5 1.8 550 chr2R 21753072 intergenic not near genes chr2R 21753347 intergenic not near genes chr2R 21753622 intergenic not near genes chr2R_33_21750001 chr2R_21750001 RAL-304_100b 1725 chr2R 21809501 21809554 chr2R 21817766 21817819 roo 37 8264 11.5 17.0 14.2 2.4 8318 chr2R 21809501 intergenic not near genes chr2R 21813660 intergenic not near genes chr2R 21817819 intergenic not near genes chr2R_37_21810001 chr2R_21810001 RAL-304_100b 1726 chr2R 21830200 21830231 chr2R 21830299 21830335 22 99 10.0 10.0 10.0 2.0 135 chr2R 21830200 intron CG13492 - chr2R 21830268 intron CG13492 - chr2R 21830335 intron CG13492 - chr2R_22_21830001 chr2R_21830001 RAL-304_100b 1727 chr2R 21841475 21841511 chr2R 21841585 21841621 23 108 6.5 30.5 18.5 1.2 146 chr2R 21841475 intergenic not near genes chr2R 21841548 intergenic not near genes chr2R 21841621 intergenic not near genes chr2R_23_21840001 chr2R_21840001 RAL-304_100b 1728 chr2R 21842974 21842984 chr2R 21843078 21843087 10 104 20.0 9.0 14.5 0.6 113 chr2R 21842974 intergenic not near genes chr2R 21843030 intergenic not near genes chr2R 21843087 intergenic not near genes chr2R_10_21840001 chr2R_21840001 RAL-304_100b 1729 chr2R 21870930 21870971 chr2R 21871034 21871075 35 101 14.5 24.5 19.5 1.7 145 chr2R 21870930 intergenic not near genes chr2R 21871002 intergenic not near genes chr2R 21871075 intergenic not near genes chr2R_35_21870001 chr2R_21870001 RAL-304_100b 1730 chr2R 21886108 21886150 chr2R 21886212 21886243 25 101 20.5 3.5 12.0 1.9 135 chr2R 21886108 intron Fili + chr2R 21886176 intron Fili + chr2R 21886243 intron Fili + chr2R_25_21885001 chr2R_21885001 RAL-304_100b 1731 chr2R 21886151 21886167 chr2R 21886210 21886292 4 108 11.0 2.5 6.8 0.5 141 chr2R 21886151 intron Fili + chr2R 21886222 intron Fili + chr2R 21886292 intron Fili + chr2R_4_21885001 chr2R_21885001 RAL-304_100b 1732 chr2R 21888317 21888321 chr2R 21888439 21888443 4 122 9.5 15.5 12.5 0.3 126 chr2R 21888317 intron Fili + chr2R 21888380 intron Fili + chr2R 21888443 intron Fili + chr2R_4_21885001 chr2R_21885001 RAL-304_100b 1733 chr2R 21889551 21889592 chr2R 21889676 21889710 9 117 11.5 0.5 6.0 1.3 159 chr2R 21889551 intron Fili + chr2R 21889630 intron Fili + chr2R 21889710 intron Fili + chr2R_9_21885001 chr2R_21885001 RAL-304_100b 1734 chr2R 21894877 21894883 chr2R 21894967 21894986 5 99 19.5 8.0 13.8 0.3 109 chr2R 21894877 intron Fili + chr2R 21894932 intron Fili + chr2R 21894986 intron Fili + chr2R_5_21890001 chr2R_21890001 RAL-304_100b 1735 chr2R 21894886 21894919 chr2R 21894964 21895015 29 91 9.5 7.5 8.5 3.1 129 chr2R 21894886 intron Fili + chr2R 21894950 intron Fili + chr2R 21895015 intron Fili + chr2R_29_21890001 chr2R_21890001 RAL-304_100b 1736 chr2R 21906245 21906303 chr2R 21906371 21906399 26 121 9.0 16.5 12.8 1.9 154 chr2R 21906245 intron Fili + chr2R 21906322 intron Fili + chr2R 21906399 intron Fili + chr2R_26_21905001 chr2R_21905001 RAL-304_100b 1737 chr2R 21919847 21919872 chr2R 21919960 21919985 16 111 24.0 7.5 15.8 1.0 138 chr2R 21919847 intron Fili + chr2R 21919916 intron Fili + chr2R 21919985 intron Fili + chr2R_16_21915001 chr2R_21915001 RAL-304_100b 1738 chr2R 21919873 21919901 chr2R 21919958 21920014 32 106 11.5 7.0 9.2 3.1 141 chr2R 21919873 intron Fili + chr2R 21919944 intron Fili + chr2R 21920014 intron Fili + chr2R_32_21915001 chr2R_21915001 RAL-304_100b 1739 chr2R 21920914 21920920 chr2R 21921017 21921023 5 103 15.5 8.5 12.0 0.4 109 chr2R 21920914 intron Fili + chr2R 21920968 intron Fili + chr2R 21921023 intron Fili + chr2R_5_21920001 chr2R_21920001 RAL-304_100b 1740 chr2R 21932224 21932242 chr2R 21932327 21932345 10 100 49.0 8.0 28.5 0.3 121 chr2R 21932224 intron Fili + chr2R 21932284 intron Fili + chr2R 21932345 intron Fili + chr2R_10_21930001 chr2R_21930001 RAL-304_100b 1741 chr2R 21932243 21932247 chr2R 21932325 21932350 14 93 45.0 9.0 27.0 0.5 107 chr2R 21932243 intron Fili + chr2R 21932296 intron Fili + chr2R 21932350 intron Fili + chr2R_14_21930001 chr2R_21930001 RAL-304_100b 1742 chr2R 21932250 21932281 chr2R 21932324 21932377 31 98 16.5 9.0 12.8 2.2 127 chr2R 21932250 intron Fili + chr2R 21932314 intron Fili + chr2R 21932377 intron Fili + chr2R_31_21930001 chr2R_21930001 RAL-304_100b 1743 chr2R 21993347 21993404 chr2R 21993463 21993520 32 114 11.0 8.0 9.5 3.0 173 chr2R 21993347 intron CG34370 - chr2R 21993434 intron CG34370 - chr2R 21993520 intron CG34370 - chr2R_32_21990001 chr2R_21990001 RAL-304_100b 1744 chr2R 22004272 22004317 chr2R 22004391 22004436 31 118 16.0 7.0 11.5 2.5 164 chr2R 22004272 intron CG34370 - chr2R 22004354 intron CG34370 - chr2R 22004436 intron CG34370 - chr2R_31_22000001 chr2R_22000001 RAL-304_100b 1745 chr2R 22014211 22014233 chr2R 22014292 22014314 30 94 16.0 21.0 18.5 1.5 103 chr2R 22014211 intron CG34370 - chr2R 22014262 intron CG34370 - chr2R 22014314 intron CG34370 - chr2R_30_22010001 chr2R_22010001 RAL-304_100b 1746 chr2R 22016063 22016066 chr2R 24975436 24975439 5 2959373 48.5 59.0 53.8 0.1 2959376 chr2R 22016063 intron CG34370 - chr2R 23495751 intergenic not near genes chr2R 24975439 5` UTR CR45252 + chr2R_5_23495001 chr2R_23495001 RAL-304_100b 1747 chr2R 22029504 22029535 chr2R 22029604 22029638 25 102 7.0 0.0 3.5 5.6 134 chr2R 22029504 intron CG34370 - chr2R 22029571 intron CG34370 - chr2R 22029638 intron CG34370 - chr2R_25_22025001 chr2R_22025001 RAL-304_100b 1748 chr2R 22040131 22040145 chr2R 22040237 22040243 11 105 39.5 19.0 29.2 0.4 112 chr2R 22040131 intergenic not near genes chr2R 22040187 intergenic not near genes chr2R 22040243 intergenic not near genes chr2R_11_22040001 chr2R_22040001 RAL-304_100b 1749 chr2R 22040146 22040187 chr2R 22040236 22040293 47 96 15.5 18.0 16.8 2.6 147 chr2R 22040146 intergenic not near genes chr2R 22040220 intergenic not near genes chr2R 22040293 intergenic not near genes chr2R_47_22040001 chr2R_22040001 RAL-304_100b 1750 chr2R 16395905 16395906 chr2R 22046861 22046877 6 5650960 34.5 89.0 61.8 0.1 5650972 chr2R 16395905 intron Sema-2b + chr2R 19221391 intron hppy + chr2R 22046877 intergenic not near genes chr2R_6_19220001 chr2R_19220001 RAL-304_100b 1751 chr2R 22095937 22095960 chr2R 22096045 22096068 29 106 39.0 16.5 27.8 1.0 131 chr2R 22095937 intron CG11073 - chr2R 22096002 intron CG11073 - chr2R 22096068 intron CG11073 - chr2R_29_22095001 chr2R_22095001 RAL-304_100b 1752 chr2R 22095961 22095994 chr2R 22096044 22096070 41 104 19.0 16.0 17.5 2.2 109 chr2R 22095961 intron CG11073 - chr2R 22096016 intron CG11073 - chr2R 22096070 intron CG11073 - chr2R_41_22095001 chr2R_22095001 RAL-304_100b 1753 chr2R 22120771 22120785 chr2R 22121027 22121041 12 256 19.0 13.0 16.0 0.7 270 chr2R 22120771 intron Vrp1 - chr2R 22120906 intron Vrp1 - chr2R 22121041 intron Vrp1 - chr2R_12_22120001 chr2R_22120001 RAL-304_100b 1754 chr2R 22124280 22124338 chr2R 22124394 22124452 42 113 13.0 11.5 12.2 3.2 172 chr2R 22124280 3` UTR mei-S332 + chr2R 22124366 3` UTR mei-S332 + chr2R 22124452 intergenic mei-S332 +,GM130 - chr2R_42_22120001 chr2R_22120001 RAL-304_100b 1755 chr2R 22132266 22132285 chr2R 22132371 22132390 12 104 23.0 7.0 15.0 0.8 124 chr2R 22132266 intergenic not near genes chr2R 22132328 intergenic not near genes chr2R 22132390 intergenic not near genes chr2R_12_22130001 chr2R_22130001 RAL-304_100b 1756 chr2R 22185668 22185702 chr2R 22185787 22185804 23 119 13.5 6.0 9.8 2.1 136 chr2R 22185668 3` UTR MED16 + chr2R 22185736 3` UTR MED16 + chr2R 22185804 3` UTR MED16 + chr2R_23_22185001 chr2R_22185001 RAL-304_100b 1757 chr2R 22189418 22189476 chr2R 22189571 22189627 32 150 11.5 5.0 8.2 3.5 209 chr2R 22189418 3` UTR Vps35 + chr2R 22189522 3` UTR Vps35 + chr2R 22189627 3` UTR Vps35 + chr2R_32_22185001 chr2R_22185001 RAL-304_100b 1758 chr2R 22258473 22258533 chr2R 22258629 22258689 29 152 14.5 3.5 9.0 2.9 216 chr2R 22258473 intron dve + chr2R 22258581 intron dve + chr2R 22258689 intron dve + chr2R_29_22255001 chr2R_22255001 RAL-304_100b 1759 chr2R 22290057 22290094 chr2R 22290166 22290187 18 107 23.0 14.0 18.5 0.9 130 chr2R 22290057 intergenic not near genes chr2R 22290122 intergenic not near genes chr2R 22290187 intergenic not near genes chr2R_18_22290001 chr2R_22290001 RAL-304_100b 1760 chr2R 22297704 22297738 chr2R 22297804 22297839 9 99 2.5 14.0 8.2 1.0 135 chr2R 22297704 intergenic not near genes chr2R 22297772 intergenic wdp - chr2R 22297839 intergenic wdp - chr2R_9_22295001 chr2R_22295001 RAL-304_100b 1761 chr2R 4825123 4825123 chr2R 22311214 22311216 6 17486092 60.0 31.0 45.5 0.1 17486093 chr2R 4825123 intergenic not near genes chr2R 13568170 intergenic not near genes chr2R 22311216 intron wdp - chr2R_6_13565001 chr2R_13565001 RAL-304_100b 1762 chr2R 22349670 22349712 chr2R 22351479 22351521 jockey 43 1803 22.5 21.5 22.0 1.9 1851 chr2R 22349670 intron Liprin-gamma - chr2R 22350596 intron Liprin-gamma - chr2R 22351521 intron Liprin-gamma - chr2R_43_22350001 chr2R_22350001 RAL-304_100b 1763 chr2R 22349713 22349721 chr2R 22351477 22351510 jockey 8 1800 15.5 21.0 18.2 0.4 1797 chr2R 22349713 intron Liprin-gamma - chr2R 22350612 intron Liprin-gamma - chr2R 22351510 intron Liprin-gamma - chr2R_8_22350001 chr2R_22350001 RAL-304_100b 1764 chr2R 22360362 22360403 chr2R 22360820 22360820 jockey 9 453 28.0 18.0 23.0 0.4 458 chr2R 22360362 intron Liprin-gamma - chr2R 22360591 intron Liprin-gamma - chr2R 22360820 intron Liprin-gamma - chr2R_9_22360001 chr2R_22360001 RAL-304_100b 1765 chr2R 22374616 22374637 chr2R 22374724 22374749 21 111 10.5 7.0 8.8 2.1 133 chr2R 22374616 3` UTR CR44759 - chr2R 22374682 3` UTR CR44759 - chr2R 22374749 3` UTR CR44759 - chr2R_21_22370001 chr2R_22370001 RAL-304_100b 1766 chr2R 22380338 22380382 chr2R 22380454 22380496 10 116 10.5 2.0 6.2 1.4 158 chr2R 22380338 intron wrapper + chr2R 22380417 intron wrapper + chr2R 22380496 intron wrapper + chr2R_10_22380001 chr2R_22380001 RAL-304_100b 1767 chr2R 22525732 22525785 chr2R 22529316 22529356 jockey 41 3580 15.0 16.0 15.5 2.5 3624 chr2R 22525732 intron px - chr2R 22527544 intron px - chr2R 22529356 intron px - chr2R_41_22525001 chr2R_22525001 RAL-304_100b 1768 chr2R 22541671 22541729 chr2R 22542123 22542165 35 445 14.0 13.5 13.8 2.4 494 chr2R 22541671 intron px - chr2R 22541918 intron px - chr2R 22542165 intron px - chr2R_35_22540001 chr2R_22540001 RAL-304_100b 1769 chr2R 22559042 22559045 chr2R 22559161 22559164 6 119 35.5 13.5 24.5 0.2 122 chr2R 22559042 intron px - chr2R 22559103 intron px - chr2R 22559164 intron px - chr2R_6_22555001 chr2R_22555001 RAL-304_100b 1770 chr2R 22559046 22559093 chr2R 22559150 22559212 29 116 12.5 10.5 11.5 2.3 166 chr2R 22559046 intron px - chr2R 22559129 intron px - chr2R 22559212 intron px - chr2R_29_22555001 chr2R_22555001 RAL-304_100b 1771 chr2R 22574136 22574140 chr2R 22574238 22574248 7 106 44.5 16.0 30.2 0.2 112 chr2R 22574136 intron dnr1 - chr2R 22574192 intron dnr1 - chr2R 22574248 intron dnr1 - chr2R_7_22570001 chr2R_22570001 RAL-304_100b 1772 chr2R 22574141 22574187 chr2R 22574234 22574271 19 99 13.5 15.0 14.2 1.2 130 chr2R 22574141 intron dnr1 - chr2R 22574206 intron dnr1 - chr2R 22574271 intron dnr1 - chr2R_19_22570001 chr2R_22570001 RAL-304_100b 1773 chr2R 22580412 22580440 chr2R 22586581 22586609 diver 5 6169 8.0 6.5 7.2 0.6 6197 chr2R 22580412 intron dnr1 - chr2R 22583510 intron dnr1 - chr2R 22586609 intron dnr1 - chr2R_5_22580001 chr2R_22580001 RAL-304_100b 1774 chr2R 22588122 22588152 chr2R 22588248 22588279 38 123 33.5 26.5 30.0 1.2 157 chr2R 22588122 intron dnr1 - chr2R 22588200 intron dnr1 - chr2R 22588279 intron dnr1 - chr2R_38_22585001 chr2R_22585001 RAL-304_100b 1775 chr2R 22588153 22588158 chr2R 22588244 22588285 4 110 28.0 23.5 25.8 0.1 132 chr2R 22588153 intron dnr1 - chr2R 22588219 intron dnr1 - chr2R 22588285 intron dnr1 - chr2R_4_22585001 chr2R_22585001 RAL-304_100b 1776 chr2R 22629380 22629388 chr2R 22629482 22629490 8 102 13.5 14.5 14.0 0.5 110 chr2R 22629380 intron CG33143 + chr2R 22629435 intron CG33143 + chr2R 22629490 intron CG33143 + chr2R_8_22625001 chr2R_22625001 RAL-304_100b 1777 chr2R 22646442 22646476 chr2R 22646559 22646568 15 115 12.5 0.0 6.2 2.1 126 chr2R 22646442 intergenic CG2852 -,CG30195 - chr2R 22646505 intergenic CG30195 -,CG2852 - chr2R 22646568 intergenic CG30195 -,CG2852 - chr2R_15_22645001 chr2R_22645001 RAL-304_100b 1778 chr2R 22654346 22654400 chr2R 22654446 22654506 29 103 5.0 16.0 10.5 2.5 160 chr2R 22654346 exon Cyp6d2 - chr2R 22654426 5` UTR Cyp6d2 - chr2R 22654506 5` UTR Cyp6d2 - chr2R_29_22650001 chr2R_22650001 RAL-304_100b 1779 chr2R 22735229 22735244 chr2R 22735330 22735344 8 100 29.0 9.0 19.0 0.4 115 chr2R 22735229 intron jbug - chr2R 22735286 intron jbug - chr2R 22735344 intron jbug - chr2R_8_22735001 chr2R_22735001 RAL-304_100b 1780 chr2R 22735248 22735287 chr2R 22735329 22735388 7 94 7.0 9.0 8.0 0.8 140 chr2R 22735248 intron jbug - chr2R 22735318 intron jbug - chr2R 22735388 intron jbug - chr2R_7_22735001 chr2R_22735001 RAL-304_100b 1781 chr2R 22774942 22774960 chr2R 22775386 22775388 jockey 13 441 32.5 13.0 22.8 0.5 446 chr2R 22774942 intron CG42260 - chr2R 22775165 intron CG42260 - chr2R 22775388 intron CG42260 - chr2R_13_22775001 chr2R_22775001 RAL-304_100b 1782 chr2R 22774961 22774995 chr2R 22775384 22775424 jockey 33 440 14.0 12.5 13.2 2.3 463 chr2R 22774961 intron CG42260 - chr2R 22775192 intron CG42260 - chr2R 22775424 intron CG42260 - chr2R_33_22775001 chr2R_22775001 RAL-304_100b 1783 chr2R 22787577 22787592 chr2R 22787735 22787750 14 158 16.5 13.0 14.8 0.9 173 chr2R 22787577 intron CG42260 - chr2R 22787664 intron CG42260 - chr2R 22787750 intron CG42260 - chr2R_14_22785001 chr2R_22785001 RAL-304_100b 1784 chr2R 22839468 22839526 chr2R 22839572 22839635 18 104 7.0 0.0 3.5 4.0 167 chr2R 22839468 intergenic CG9825 + chr2R 22839552 intergenic CG9825 + chr2R 22839635 intergenic CG9825 + chr2R_18_22835001 chr2R_22835001 RAL-304_100b 1785 chr2R 22843037 22843046 chr2R 22845028 22845037 flea 7 1991 17.0 12.0 14.5 0.5 2000 chr2R 22843037 intergenic CG9826 + chr2R 22844037 intergenic not near genes chr2R 22845037 intergenic not near genes chr2R_7_22840001 chr2R_22840001 RAL-304_100b 1786 chr2R 22908454 22908461 chr2R 22908573 22908580 7 119 20.5 9.0 14.8 0.4 126 chr2R 22908454 intron nahoda + chr2R 22908517 intron nahoda + chr2R 22908580 intron nahoda + chr2R_7_22905001 chr2R_22905001 RAL-304_100b 1787 chr2R 22957723 22957764 chr2R 22957830 22957871 39 106 10.0 5.5 7.8 4.4 148 chr2R 22957723 intergenic CR44780 - chr2R 22957797 intergenic CR44780 - chr2R 22957871 intergenic CR44780 - chr2R_39_22955001 chr2R_22955001 RAL-304_100b 1788 chr2R 22988288 22988301 chr2R 22988394 22988407 9 106 44.5 27.0 35.8 0.2 119 chr2R 22988288 intron twi + chr2R 22988348 intron twi + chr2R 22988407 intron twi + chr2R_9_22985001 chr2R_22985001 RAL-304_100b 1789 chr2R 22988302 22988322 chr2R 22988392 22988428 23 101 29.5 26.0 27.8 0.8 126 chr2R 22988302 intron twi + chr2R 22988365 intron twi + chr2R 22988428 intron twi + chr2R_23_22985001 chr2R_22985001 RAL-304_100b 1790 chr2R 23024372 23024406 chr2R 23024455 23024458 7 81 12.0 9.5 10.8 0.6 86 chr2R 23024372 intron,intron twi +,CG42741 - chr2R 23024415 intron,intron twi +,CG42741 - chr2R 23024458 intron,intron twi +,CG42741 - chr2R_7_23020001 chr2R_23020001 RAL-304_100b 1791 chr2R 23029587 23029625 chr2R 23029689 23029695 35 99 26.0 20.0 23.0 1.5 108 chr2R 23029587 intron,intron twi +,CG42741 - chr2R 23029641 intron,intron twi +,CG42741 - chr2R 23029695 intron,intron twi +,CG42741 - chr2R_35_23025001 chr2R_23025001 RAL-304_100b 1792 chr2R 23045310 23045361 chr2R 23045549 23045600 37 238 12.0 12.0 12.0 2.8 290 chr2R 23045310 intron twi + chr2R 23045455 intron twi + chr2R 23045600 intron twi + chr2R_37_23045001 chr2R_23045001 RAL-304_100b 1793 chr2R 23052627 23052682 chr2R 23052728 23052783 38 98 17.5 18.5 18.0 2.0 156 chr2R 23052627 intergenic not near genes chr2R 23052705 intergenic not near genes chr2R 23052783 intergenic not near genes chr2R_38_23050001 chr2R_23050001 RAL-304_100b 1794 chr2R 23134813 23134849 chr2R 23134920 23134935 27 102 4.5 28.5 16.5 1.5 122 chr2R 23134813 intergenic not near genes chr2R 23134874 intergenic not near genes chr2R 23134935 intergenic not near genes chr2R_27_23130001 chr2R_23130001 RAL-304_100b 1795 chr2R 23155696 23155716 chr2R 23155846 23155857 20 148 27.0 10.5 18.8 1.0 161 chr2R 23155696 intron CG9899 + chr2R 23155776 intron CG9899 + chr2R 23155857 intron CG9899 + chr2R_20_23155001 chr2R_23155001 RAL-304_100b 1796 chr2R 23155719 23155751 chr2R 23155842 23155875 25 147 12.5 10.5 11.5 2.0 156 chr2R 23155719 intron CG9899 + chr2R 23155797 intron CG9899 + chr2R 23155875 intron CG9899 + chr2R_25_23155001 chr2R_23155001 RAL-304_100b 1797 chr2R 23175014 23175016 chr2R 23175116 23175118 5 102 42.0 12.0 27.0 0.2 104 chr2R 23175014 intron CG34371 - chr2R 23175066 intron CG34371 - chr2R 23175118 intron CG34371 - chr2R_5_23175001 chr2R_23175001 RAL-304_100b 1798 chr2R 23175017 23175068 chr2R 23175115 23175152 52 98 16.5 11.5 14.0 3.5 135 chr2R 23175017 intron CG34371 - chr2R 23175084 intron CG34371 - chr2R 23175152 intron CG34371 - chr2R_52_23175001 chr2R_23175001 RAL-304_100b 1799 chr2R 23184287 23184294 chr2R 23184367 23184394 10 102 0.5 20.5 10.5 0.9 107 chr2R 23184287 intron,intron CG34371 -,CG13539 + chr2R 23184340 intron,intron CG34371 -,CG13539 + chr2R 23184394 intron,intron CG34371 -,CG13539 + chr2R_10_23180001 chr2R_23180001 RAL-304_100b 1800 chr2R 23215778 23215785 chr2R 23215856 23215888 4 92 7.5 27.0 17.2 0.2 110 chr2R 23215778 intergenic not near genes chr2R 23215833 intergenic not near genes chr2R 23215888 intergenic not near genes chr2R_4_23215001 chr2R_23215001 RAL-304_100b 1801 chr2R 23218981 23219025 chr2R 23219245 23219268 18 259 20.5 0.0 10.2 1.6 287 chr2R 23218981 intergenic not near genes chr2R 23219124 intergenic not near genes chr2R 23219268 intergenic not near genes chr2R_18_23215001 chr2R_23215001 RAL-304_100b 1802 chr2R 23229703 23229736 chr2R 23229918 23229972 46 218 13.0 18.5 15.8 2.7 269 chr2R 23229703 intergenic not near genes chr2R 23229838 intergenic not near genes chr2R 23229972 intergenic not near genes chr2R_46_23225001 chr2R_23225001 RAL-304_100b 1803 chr2R 23236824 23236842 chr2R 23236936 23236959 17 115 12.5 19.0 15.8 1.0 135 chr2R 23236824 intergenic not near genes chr2R 23236892 intergenic not near genes chr2R 23236959 intergenic not near genes chr2R_17_23235001 chr2R_23235001 RAL-304_100b 1804 chr2R 23236844 23236852 chr2R 23236928 23236943 11 106 7.5 17.0 12.2 0.8 99 chr2R 23236844 intergenic not near genes chr2R 23236894 intergenic not near genes chr2R 23236943 intergenic not near genes chr2R_11_23235001 chr2R_23235001 RAL-304_100b 1805 chr2R 23253914 23253934 chr2R 23254259 23254264 10 341 20.0 2.5 11.2 0.8 350 chr2R 23253914 intergenic not near genes chr2R 23254089 intergenic not near genes chr2R 23254264 intergenic not near genes chr2R_10_23250001 chr2R_23250001 RAL-304_100b 1806 chr2R 23294192 23294228 chr2R 23294293 23294301 31 95 11.0 7.0 9.0 3.1 109 chr2R 23294192 intergenic not near genes chr2R 23294246 intergenic not near genes chr2R 23294301 intergenic not near genes chr2R_31_23290001 chr2R_23290001 RAL-304_100b 1807 chr2R 23356255 23356268 chr2R 23356369 23356381 10 113 30.0 20.5 25.2 0.4 126 chr2R 23356255 3` UTR Rpi + chr2R 23356318 3` UTR Rpi + chr2R 23356381 3` UTR,3` UTR Rpi +,CG3500 - chr2R_10_23355001 chr2R_23355001 RAL-304_100b 1808 chr2R 23356269 23356274 chr2R 23356368 23356388 6 109 27.5 19.5 23.5 0.2 119 chr2R 23356269 3` UTR Rpi + chr2R 23356328 3` UTR Rpi + chr2R 23356388 3` UTR,3` UTR Rpi +,CG3500 - chr2R_6_23355001 chr2R_23355001 RAL-304_100b 1809 chr2R 23356276 23356310 chr2R 23356362 23356424 46 100 15.5 14.5 15.0 2.9 148 chr2R 23356276 3` UTR Rpi + chr2R 23356350 3` UTR Rpi + chr2R 23356424 3` UTR,3` UTR Rpi +,CG3500 - chr2R_46_23355001 chr2R_23355001 RAL-304_100b 1810 chr2R 23402586 23402596 chr2R 23407687 23407697 flea 7 5101 19.5 17.0 18.2 0.4 5111 chr2R 23402586 intergenic CG3520 - chr2R 23405142 intergenic not near genes chr2R 23407697 intergenic not near genes chr2R_7_23405001 chr2R_23405001 RAL-304_100b 1811 chr2R 23402598 23402642 chr2R 23407684 23407741 flea 28 5099 9.5 16.0 12.8 2.0 5143 chr2R 23402598 intergenic CG3520 - chr2R 23405170 intergenic not near genes chr2R 23407741 intergenic not near genes chr2R_28_23405001 chr2R_23405001 RAL-304_100b 1812 chr2R 23413838 23413894 chr2R 23414020 23414076 54 179 9.0 13.0 11.0 4.5 238 chr2R 23413838 intron CG9812 - chr2R 23413957 intron CG9812 - chr2R 23414076 intron CG9812 - chr2R_54_23410001 chr2R_23410001 RAL-304_100b 1813 chr2R 23423714 23423774 chr2R 23423897 23423916 36 177 11.0 11.5 11.2 3.0 202 chr2R 23423714 intron CG9815 - chr2R 23423815 intron CG9815 - chr2R 23423916 intron CG9815 - chr2R_36_23420001 chr2R_23420001 RAL-304_100b 1814 chr2R 23437205 23437240 chr2R 23437306 23437324 25 96 23.5 9.5 16.5 1.4 119 chr2R 23437205 intergenic not near genes chr2R 23437264 intergenic not near genes chr2R 23437324 intergenic not near genes chr2R_25_23435001 chr2R_23435001 RAL-304_100b 1815 chr2R 23452630 23452684 chr2R 23453654 23453708 43 1021 12.0 9.0 10.5 3.7 1078 chr2R 23452630 intron CG43795 + chr2R 23453169 intron CG43795 + chr2R 23453708 intron CG43795 + chr2R_43_23450001 chr2R_23450001 RAL-304_100b 1816 chr2R 23461122 23461140 chr2R 23461224 23461242 11 101 49.5 26.0 37.8 0.3 120 chr2R 23461122 intron CG43795 + chr2R 23461182 intron CG43795 + chr2R 23461242 intron CG43795 + chr2R_11_23460001 chr2R_23460001 RAL-304_100b 1817 chr2R 23467557 23467587 chr2R 23467700 23467730 15 145 17.5 27.5 22.5 0.6 173 chr2R 23467557 intron CG43795 + chr2R 23467644 intron CG43795 + chr2R 23467730 intron CG43795 + chr2R_15_23465001 chr2R_23465001 RAL-304_100b 1818 chr2R 23492991 23493040 chr2R 23493088 23493134 53 99 9.0 9.5 9.2 5.2 143 chr2R 23492991 intergenic not near genes chr2R 23493062 intergenic not near genes chr2R 23493134 intergenic not near genes chr2R_53_23490001 chr2R_23490001 RAL-304_100b 1819 chr2R 23499300 23499346 chr2R 23499420 23499471 48 122 22.0 21.5 21.8 2.1 171 chr2R 23499300 intergenic CG13558 + chr2R 23499386 intergenic CG13558 + chr2R 23499471 intergenic CG13558 + chr2R_48_23495001 chr2R_23495001 RAL-304_100b 1820 chr2R 23508897 23508945 chr2R 23509039 23509087 33 141 12.5 14.5 13.5 2.3 190 chr2R 23508897 intergenic not near genes chr2R 23508992 intergenic not near genes chr2R 23509087 intergenic not near genes chr2R_33_23505001 chr2R_23505001 RAL-304_100b 1821 chr2R 23518170 23518220 chr2R 23518273 23518329 17 101 8.5 0.0 4.2 3.3 159 chr2R 23518170 intergenic not near genes chr2R 23518250 intergenic not near genes chr2R 23518329 intergenic not near genes chr2R_17_23515001 chr2R_23515001 RAL-304_100b 1822 chr2R 23522390 23522392 chr2R 23522494 23522496 4 104 42.5 13.0 27.8 0.1 106 chr2R 23522390 intron RabX1 - chr2R 23522443 intron RabX1 - chr2R 23522496 intron RabX1 - chr2R_4_23520001 chr2R_23520001 RAL-304_100b 1823 chr2R 23522399 23522442 chr2R 23522493 23522531 42 97 19.5 13.0 16.2 2.4 132 chr2R 23522399 intron RabX1 - chr2R 23522465 intron RabX1 - chr2R 23522531 intron RabX1 - chr2R_42_23520001 chr2R_23520001 RAL-304_100b 1824 chr2R 23529553 23529607 chr2R 23537149 23537188 412 52 7586 16.0 25.5 20.8 2.4 7635 chr2R 23529553 intron bw - chr2R 23533370 intron bw - chr2R 23537188 exon bw - chr2R_52_23530001 chr2R_23530001 RAL-304_100b 1825 chr2R 23563867 23563920 chr2R 23563972 23564025 62 102 17.5 18.5 18.0 3.3 158 chr2R 23563867 3` UTR Pi3K59F + chr2R 23563946 3` UTR Pi3K59F + chr2R 23564025 3` UTR,5` UTR Pi3K59F +,CG30184 + chr2R_62_23560001 chr2R_23560001 RAL-304_100b 1826 chr2R 23726197 23726258 chr2R 23726312 23726363 65 111 10.5 16.0 13.2 4.6 166 chr2R 23726197 intron Sesn + chr2R 23726280 intron Sesn + chr2R 23726363 intron Sesn + chr2R_65_23725001 chr2R_23725001 RAL-304_100b 1827 chr2R 23802303 23802312 chr2R 23802420 23802435 7 119 0.0 50.5 25.2 0.3 132 chr2R 23802303 3` UTR CG30177 + chr2R 23802369 3` UTR CG30177 + chr2R 23802435 3` UTR CG30177 + chr2R_7_23800001 chr2R_23800001 RAL-304_100b 1828 chr2R 23819116 23819119 chr2R 23819236 23819239 4 120 46.5 15.0 30.8 0.1 123 chr2R 23819116 intergenic not near genes chr2R 23819178 intergenic not near genes chr2R 23819239 intergenic not near genes chr2R_4_23815001 chr2R_23815001 RAL-304_100b 1829 chr2R 23819120 23819142 chr2R 23819235 23819262 16 116 33.5 15.0 24.2 0.6 142 chr2R 23819120 intergenic not near genes chr2R 23819191 intergenic not near genes chr2R 23819262 intergenic not near genes chr2R_16_23815001 chr2R_23815001 RAL-304_100b 1830 chr2R 23819887 23819946 chr2R 23820003 23820061 42 112 16.0 16.0 16.0 2.5 174 chr2R 23819887 intergenic CG5549 + chr2R 23819974 intergenic CG5549 + chr2R 23820061 intergenic CG5549 + chr2R_42_23815001 chr2R_23815001 RAL-304_100b 1831 chr2R 23840715 23840730 chr2R 23840822 23840829 9 106 13.0 0.0 6.5 1.2 114 chr2R 23840715 5` UTR CR44805 + chr2R 23840772 5` UTR CR44805 + chr2R 23840829 intergenic CR44805 + chr2R_9_23840001 chr2R_23840001 RAL-304_100b 1832 chr2R 23914284 23914332 chr2R 23921933 23921975 412 49 7646 23.5 28.5 26.0 1.8 7691 chr2R 23914284 exon kcc + chr2R 23918130 intron kcc + chr2R 23921975 exon kcc + chr2R_49_23915001 chr2R_23915001 RAL-304_100b 1833 chr2R 23926808 23926819 chr2R 23926915 23926926 11 107 20.0 14.0 17.0 0.6 118 chr2R 23926808 3` UTR,3` UTR Ca-P60A -,CG2812 + chr2R 23926867 3` UTR,3` UTR Ca-P60A -,CG2812 + chr2R 23926926 3` UTR Ca-P60A - chr2R_11_23925001 chr2R_23925001 RAL-304_100b 1834 chr2R 23926821 23926861 chr2R 23926913 23926968 40 104 7.0 13.5 10.2 3.6 147 chr2R 23926821 3` UTR,3` UTR Ca-P60A -,CG2812 + chr2R 23926894 3` UTR,3` UTR Ca-P60A -,CG2812 + chr2R 23926968 3` UTR Ca-P60A - chr2R_40_23925001 chr2R_23925001 RAL-304_100b 1835 chr2R 23986487 23986547 chr2R 23986592 23986649 44 101 8.5 11.5 10.0 4.0 162 chr2R 23986487 intron Phm - chr2R 23986568 intron Phm - chr2R 23986649 intron,5` UTR Phm -,CG30178 + chr2R_44_23985001 chr2R_23985001 RAL-304_100b 1836 chr2R 24031356 24031410 chr2R 24031465 24031519 33 106 9.5 12.5 11.0 2.8 163 chr2R 24031356 5` UTR CG30172 - chr2R 24031438 intergenic CG30172 -,Chi - chr2R 24031519 intergenic Chi -,CG30172 - chr2R_33_24030001 chr2R_24030001 RAL-304_100b 1837 chr2R 24125061 24125120 chr2R 24130706 24130758 64 5651 159.0 147.5 153.2 0.4 5697 chr2R 24125061 3` UTR,exon,5` UTR CG43775 -,CG43776 -,CG43777 - chr2R 24127910 exon tamo - chr2R 24130758 intron tamo - chr2R_64_24125001 chr2R_24125001 RAL-304_100b 1838 chr2R 24141122 24141177 chr2R 24141221 24141280 60 100 15.5 15.5 15.5 3.6 158 chr2R 24141122 intron Dat + chr2R 24141201 intron Dat + chr2R 24141280 intron Dat + chr2R_60_24140001 chr2R_24140001 RAL-304_100b 1839 chr2R 24147043 24147050 chr2R 24154645 24154652 412 4 7602 48.0 26.5 37.2 0.1 7609 chr2R 24147043 intron Dat + chr2R 24150848 intron Dat + chr2R 24154652 intron Dat + chr2R_4_24150001 chr2R_24150001 RAL-304_100b 1840 chr2R 24147051 24147088 chr2R 24154644 24154671 412 26 7597 20.0 25.5 22.8 1.1 7620 chr2R 24147051 intron Dat + chr2R 24150861 intron Dat + chr2R 24154671 intron Dat + chr2R_26_24150001 chr2R_24150001 RAL-304_100b 1841 chr2R 24177210 24177268 chr2R 24184720 24184778 412 27 7509 14.5 1.0 7.8 3.1 7568 chr2R 24177210 3` UTR Nop60B + chr2R 24180994 intron Nop60B + chr2R 24184778 3` UTR Nop60B + chr2R_27_24180001 chr2R_24180001 RAL-304_100b 1842 chr2R 24228369 24228378 chr2R 24228475 24228478 6 104 42.5 16.0 29.2 0.2 109 chr2R 24228369 intron CG30419 - chr2R 24228424 intron CG30419 - chr2R 24228478 intron CG30419 - chr2R_6_24225001 chr2R_24225001 RAL-304_100b 1843 chr2R 24228380 24228430 chr2R 24228474 24228534 52 83 12.5 15.5 14.0 3.5 154 chr2R 24228380 intron CG30419 - chr2R 24228457 intron CG30419 - chr2R 24228534 intron CG30419 - chr2R_52_24225001 chr2R_24225001 RAL-304_100b 1844 chr2R 6712695 6712697 chr2R 24252271 24252273 5 17539576 32.5 57.0 44.8 0.1 17539578 chr2R 6712695 intron,intron CG3409 -,CG45092 - chr2R 15482484 5` UTR CG8180 - chr2R 24252273 intron nord + chr2R_5_15480001 chr2R_15480001 RAL-304_100b 1845 chr2R 24287108 24287135 chr2R 24287210 24287237 34 101 40.5 19.5 30.0 1.1 129 chr2R 24287108 intron nvy + chr2R 24287172 intron nvy + chr2R 24287237 intron nvy + chr2R_34_24285001 chr2R_24285001 RAL-304_100b 1846 chr2R 24287141 24287166 chr2R 24287208 24287268 28 98 19.5 19.5 19.5 1.4 127 chr2R 24287141 intron nvy + chr2R 24287204 intron nvy + chr2R 24287268 intron nvy + chr2R_28_24285001 chr2R_24285001 RAL-304_100b 1847 chr2R 24351386 24351440 chr2R 24351492 24351546 53 101 11.0 12.0 11.5 4.2 160 chr2R 24351386 intron,5` UTR bs +,CG44812 - chr2R 24351466 intron bs + chr2R 24351546 intron,3` UTR bs +,CR44811 - chr2R_53_24350001 chr2R_24350001 RAL-304_100b 1848 chr2R 24353407 24353420 chr2R 24361791 24361807 roo 11 8384 25.5 5.0 15.2 0.7 8400 chr2R 24353407 intron,intron bs +,CR44811 - chr2R 24357607 intron,intron bs +,CR44811 - chr2R 24361807 intron,intron bs +,CR44811 - chr2R_11_24355001 chr2R_24355001 RAL-304_100b 1849 chr2R 24353424 24353455 chr2R 24361788 24361819 roo 18 8382 13.0 5.0 9.0 1.8 8395 chr2R 24353424 intron,intron bs +,CR44811 - chr2R 24357622 intron,intron bs +,CR44811 - chr2R 24361819 intron,intron bs +,CR44811 - chr2R_18_24355001 chr2R_24355001 RAL-304_100b 1850 chr2R 24383801 24383855 chr2R 24383907 24383961 45 104 17.0 17.5 17.2 2.5 160 chr2R 24383801 intron mAChR-A - chr2R 24383881 intron mAChR-A - chr2R 24383961 exon mAChR-A - chr2R_45_24380001 chr2R_24380001 RAL-304_100b 1851 chr2R 24590069 24590143 chr2R 24590202 24590260 42 126 0.0 17.5 8.8 4.3 191 chr2R 24590069 intron pio + chr2R 24590164 intron pio + chr2R 24590260 intron pio + chr2R_42_24590001 chr2R_24590001 RAL-304_100b 1852 chr2R 24592923 24592964 chr2R 24593041 24593082 49 112 30.5 11.5 21.0 2.2 159 chr2R 24592923 intron pio + chr2R 24593002 intron pio + chr2R 24593082 intron pio + chr2R_49_24590001 chr2R_24590001 RAL-304_100b 1853 chr2R 24592965 24592979 chr2R 24593040 24593097 12 108 25.0 11.0 18.0 0.6 132 chr2R 24592965 intron pio + chr2R 24593031 intron pio + chr2R 24593097 intron pio + chr2R_12_24590001 chr2R_24590001 RAL-304_100b 1854 chr2R 24633967 24634024 chr2R 24634073 24634130 57 90 23.0 15.0 19.0 2.9 163 chr2R 24633967 intron CG13594 - chr2R 24634048 intron CG13594 - chr2R 24634130 intron CG13594 - chr2R_57_24630001 chr2R_24630001 RAL-304_100b 1855 chr2R 24647554 24647618 chr2R 24655148 24655200 412 34 7588 0.0 15.0 7.5 4.0 7646 chr2R 24647554 intergenic not near genes chr2R 24651377 intergenic not near genes chr2R 24655200 intergenic not near genes chr2R_34_24650001 chr2R_24650001 RAL-304_100b 1856 chr2R 23730309 23730317 chr2R 24658491 24658494 5 928175 62.0 91.0 76.5 0.1 928185 chr2R 23730309 intron Sesn + chr2R 24194402 exon ocm + chr2R 24658494 intergenic not near genes chr2R_5_24190001 chr2R_24190001 RAL-304_100b 1857 chr2R 24687622 24687643 chr2R 24687727 24687752 21 107 40.0 23.5 31.8 0.6 130 chr2R 24687622 intergenic Mmp1 - chr2R 24687687 intergenic Mmp1 - chr2R 24687752 intergenic Mmp1 - chr2R_21_24685001 chr2R_24685001 RAL-304_100b 1858 chr2R 24687644 24687648 chr2R 24687724 24687747 7 100 34.5 22.0 28.2 0.2 103 chr2R 24687644 intergenic Mmp1 - chr2R 24687696 intergenic Mmp1 - chr2R 24687747 intergenic Mmp1 - chr2R_7_24685001 chr2R_24685001 RAL-304_100b 1859 chr2R 24687652 24687668 chr2R 24687722 24687774 17 95 20.5 20.5 20.5 0.8 122 chr2R 24687652 intergenic Mmp1 - chr2R 24687713 intergenic Mmp1 - chr2R 24687774 intergenic Mmp1 - chr2R_17_24685001 chr2R_24685001 RAL-304_100b 1860 chr2R 24718435 24718450 chr2R 24718542 24718557 16 107 50.0 23.0 36.5 0.4 122 chr2R 24718435 intron Mid1 - chr2R 24718496 intron Mid1 - chr2R 24718557 intron Mid1 - chr2R_16_24715001 chr2R_24715001 RAL-304_100b 1861 chr2R 24718451 24718489 chr2R 24718541 24718589 44 100 22.0 21.5 21.8 1.9 138 chr2R 24718451 intron Mid1 - chr2R 24718520 intron Mid1 - chr2R 24718589 intron Mid1 - chr2R_44_24715001 chr2R_24715001 RAL-304_100b 1862 chr2R 24719804 24719826 chr2R 24719906 24719963 43 126 12.0 18.0 15.0 2.7 159 chr2R 24719804 intron Mid1 - chr2R 24719884 intron Mid1 - chr2R 24719963 intron Mid1 - chr2R_43_24715001 chr2R_24715001 RAL-304_100b 1863 chr2R 24727857 24727918 chr2R 24735390 24735421 mdg1 54 7526 11.5 12.0 11.8 4.2 7564 chr2R 24727857 intron Mid1 - chr2R 24731639 intron Mid1 - chr2R 24735421 intron Mid1 - chr2R_54_24730001 chr2R_24730001 RAL-304_100b 1864 chr2R 24763586 24763594 chr2R 24765587 24765595 G2 5 2001 57.5 26.5 42.0 0.1 2009 chr2R 24763586 exon CG3894 + chr2R 24764590 intron CG3894 + chr2R 24765595 exon CG3894 + chr2R_5_24760001 chr2R_24760001 RAL-304_100b 1865 chr2R 24763595 24763603 chr2R 24765586 24765599 G2 16 1997 47.5 26.5 37.0 0.4 2004 chr2R 24763595 exon CG3894 + chr2R 24764597 intron CG3894 + chr2R 24765599 exon CG3894 + chr2R_16_24760001 chr2R_24760001 RAL-304_100b 1866 chr2R 24763604 24763644 chr2R 24765584 24765645 G2 45 1995 24.0 24.5 24.2 1.8 2041 chr2R 24763604 exon CG3894 + chr2R 24764624 intron CG3894 + chr2R 24765645 exon CG3894 + chr2R_45_24760001 chr2R_24760001 RAL-304_100b 1867 chr2R 24859815 24859869 chr2R 24859926 24859974 31 108 17.0 12.0 14.5 2.0 159 chr2R 24859815 5` UTR CR44829 + chr2R 24859894 5` UTR CR44829 + chr2R 24859974 5` UTR CR44829 + chr2R_31_24855001 chr2R_24855001 RAL-304_100b 1868 chr2R 24884027 24884079 chr2R 24884134 24884186 46 105 13.5 18.5 16.0 2.7 159 chr2R 24884027 intron NKAIN + chr2R 24884106 intron NKAIN + chr2R 24884186 intron NKAIN + chr2R_46_24880001 chr2R_24880001 RAL-304_100b 1869 chr2R 22016063 22016066 chr2R 24975353 24975355 4 2959289 48.5 43.5 46.0 0.1 2959292 chr2R 22016063 intron CG34370 - chr2R 23495709 intergenic not near genes chr2R 24975355 intergenic CG2736 -,CR45252 + chr2R_4_23495001 chr2R_23495001 RAL-304_100b 1870 chr2R 25004868 25004884 chr2R 25004971 25004987 8 103 29.5 14.0 21.8 0.4 119 chr2R 25004868 intron zip - chr2R 25004928 intron zip - chr2R 25004987 intron zip - chr2R_8_25000001 chr2R_25000001 RAL-304_100b 1871 chr2R 25004886 25004918 chr2R 25004969 25005006 27 95 17.0 13.0 15.0 1.7 120 chr2R 25004886 intron zip - chr2R 25004946 intron zip - chr2R 25005006 intron zip - chr2R_27_25000001 chr2R_25000001 RAL-304_100b 1872 chr2R 25014522 25014573 chr2R 25014618 25014674 54 94 13.5 10.5 12.0 4.2 152 chr2R 25014522 intron uzip + chr2R 25014598 intron uzip + chr2R 25014674 intron uzip + chr2R_54_25010001 chr2R_25010001 RAL-304_100b 1873 chr2R 25018316 25018374 chr2R 25018442 25018462 40 121 16.0 15.5 15.8 2.4 146 chr2R 25018316 intron uzip + chr2R 25018389 intron uzip + chr2R 25018462 intron uzip + chr2R_40_25015001 chr2R_25015001 RAL-304_100b 1874 chr2R 25022614 25022671 chr2R 25022723 25022780 42 108 9.5 9.0 9.2 4.1 166 chr2R 25022614 intron uzip + chr2R 25022697 intron uzip + chr2R 25022780 intron uzip + chr2R_42_25020001 chr2R_25020001 RAL-304_100b 1875 chr2R 25061973 25062012 chr2R 25062072 25062116 39 97 11.5 16.0 13.8 2.6 143 chr2R 25061973 5` UTR gsb + chr2R 25062044 5` UTR gsb + chr2R 25062116 5` UTR gsb + chr2R_39_25060001 chr2R_25060001 RAL-304_100b 1876 chr2R 25080283 25080339 chr2R 25080678 25080738 28 393 4.5 12.5 8.5 2.9 455 chr2R 25080283 intron gol - chr2R 25080510 intron gol - chr2R 25080738 intron gol - chr2R_28_25080001 chr2R_25080001 RAL-304_100b 1877 chr2R 25081585 25081638 chr2R 25082704 25082759 46 1116 18.0 17.5 17.8 2.4 1174 chr2R 25081585 intron gol - chr2R 25082172 intron gol - chr2R 25082759 intron gol - chr2R_46_25080001 chr2R_25080001 RAL-304_100b 1878 chr2R 25101249 25101305 chr2R 25101376 25101432 38 125 13.0 11.0 12.0 2.9 183 chr2R 25101249 intron lov - chr2R 25101340 intron lov - chr2R 25101432 intron lov - chr2R_38_25100001 chr2R_25100001 RAL-304_100b 1879 chr2R 25122936 25122990 chr2R 25123040 25123079 31 101 6.0 2.0 4.0 6.2 143 chr2R 25122936 intron lov - chr2R 25123008 intron lov - chr2R 25123079 intron lov - chr2R_31_25120001 chr2R_25120001 RAL-304_100b 1880 chr2R 25141633 25141681 chr2R 25159348 25159395 roo 30 17714 11.0 12.0 11.5 2.4 17762 chr2R 25141633 intergenic not near genes chr2R 25150514 intergenic not near genes chr2R 25159395 intergenic not near genes chr2R_30_25150001 chr2R_25150001 RAL-304_100b 1881 chr2R 25180757 25180795 chr2R 25180841 25180897 23 98 5.0 6.5 5.8 3.4 140 chr2R 25180757 intergenic not near genes chr2R 25180827 intergenic not near genes chr2R 25180897 intergenic not near genes chr2R_23_25180001 chr2R_25180001 RAL-304_100b 1882 chr2R 25181102 25181133 chr2R 25181198 25181237 16 116 9.0 12.0 10.5 1.4 135 chr2R 25181102 intergenic not near genes chr2R 25181170 intergenic not near genes chr2R 25181237 intergenic not near genes chr2R_16_25180001 chr2R_25180001 RAL-304_100b 1883 chr2R 25191706 25191719 chr2R 25191809 25191814 8 101 6.0 7.5 6.8 1.0 108 chr2R 25191706 intron CG9380 - chr2R 25191760 intron CG9380 - chr2R 25191814 intron CG9380 - chr2R_8_25190001 chr2R_25190001 RAL-304_100b 1884 chr2R 25193316 25193368 chr2R 25193483 25193522 21 165 7.0 8.5 7.8 2.4 206 chr2R 25193316 intron CG9380 - chr2R 25193419 intron CG9380 - chr2R 25193522 intron CG9380 - chr2R_21_25190001 chr2R_25190001 RAL-304_100b 1885 chr2R 25236014 25236016 chr2R 25236150 25236152 4 136 17.5 16.0 16.8 0.2 138 chr2R 25236014 intron CG9380 - chr2R 25236083 intron CG9380 - chr2R 25236152 intron CG9380 - chr2R_4_25235001 chr2R_25235001 RAL-304_100b 1886 chr2R 25236025 25236045 chr2R 25236142 25236181 20 134 6.5 14.0 10.2 1.8 156 chr2R 25236025 intron CG9380 - chr2R 25236103 intron CG9380 - chr2R 25236181 intron CG9380 - chr2R_20_25235001 chr2R_25235001 RAL-304_100b 1887 chr2R 25253421 25253438 chr2R 25253522 25253539 16 101 17.5 9.0 13.2 1.1 118 chr2R 25253421 intron,intron CG9380 -,CG30428 + chr2R 25253480 intron,intron CG9380 -,CG30428 + chr2R 25253539 intron,intron CG9380 -,CG30428 + chr2R_16_25250001 chr2R_25250001 RAL-304_100b 1888 chr2R 25253443 25253478 chr2R 25253521 25253580 11 96 8.5 9.5 9.0 1.1 137 chr2R 25253443 intron,intron CG9380 -,CG30428 + chr2R 25253512 intron,intron CG9380 -,CG30428 + chr2R 25253580 intron,5` UTR CG9380 -,CG30428 + chr2R_11_25250001 chr2R_25250001 RAL-304_100b 1889 chr3L 51366 51416 chr3L 51489 51539 37 120 22.0 15.5 18.8 1.9 173 chr3L 51366 intergenic not near genes chr3L 51452 intergenic not near genes chr3L 51539 intergenic not near genes chr3L_37_50001 chr3L_50001 RAL-304_100b 1890 chr3L 57754 57774 chr3L 57859 57879 14 104 21.5 10.0 15.8 0.8 125 chr3L 57754 intergenic not near genes chr3L 57816 intergenic not near genes chr3L 57879 intergenic not near genes chr3L_14_55001 chr3L_55001 RAL-304_100b 1891 chr3L 57776 57806 chr3L 57858 57911 29 102 10.0 9.5 9.8 2.7 135 chr3L 57776 intergenic not near genes chr3L 57844 intergenic not near genes chr3L 57911 intergenic not near genes chr3L_29_55001 chr3L_55001 RAL-304_100b 1892 chr3L 90210 90262 chr3L 90320 90372 55 108 17.5 17.0 17.2 3.0 162 chr3L 90210 intergenic not near genes chr3L 90291 intergenic not near genes chr3L 90372 intergenic not near genes chr3L_55_90001 chr3L_90001 RAL-304_100b 1893 chr3L 90263 90265 chr3L 90315 90375 4 95 15.0 13.0 14.0 0.3 112 chr3L 90263 intergenic not near genes chr3L 90319 intergenic not near genes chr3L 90375 intergenic not near genes chr3L_4_90001 chr3L_90001 RAL-304_100b 1894 chr3L 97885 97889 chr3L 98237 98241 4 352 47.0 16.0 31.5 0.1 356 chr3L 97885 3` UTR CG12483 - chr3L 98063 exon CG12483 - chr3L 98241 intron CG12483 - chr3L_4_95001 chr3L_95001 RAL-304_100b 1895 chr3L 97890 97910 chr3L 98236 98262 17 350 35.0 16.0 25.5 0.6 372 chr3L 97890 3` UTR CG12483 - chr3L 98076 exon CG12483 - chr3L 98262 intron CG12483 - chr3L_17_95001 chr3L_95001 RAL-304_100b 1896 chr3L 97916 97937 chr3L 98233 98283 11 341 14.0 14.5 14.2 0.7 367 chr3L 97916 3` UTR CG12483 - chr3L 98100 exon CG12483 - chr3L 98283 intron CG12483 - chr3L_11_95001 chr3L_95001 RAL-304_100b 1897 chr3L 110187 110242 chr3L 119379 119434 roo 22 9188 11.5 14.5 13.0 1.6 9247 chr3L 110187 intergenic not near genes chr3L 114810 intergenic not near genes chr3L 119434 intergenic not near genes chr3L_22_110001 chr3L_110001 RAL-304_100b 1898 chr3L 296045 296085 chr3L 296389 296414 18 342 14.0 6.0 10.0 1.6 369 chr3L 296045 intron RhoGEF3 + chr3L 296230 intron RhoGEF3 + chr3L 296414 intron RhoGEF3 + chr3L_18_295001 chr3L_295001 RAL-304_100b 1899 chr3L 365500 365534 chr3L 365611 365645 22 109 11.5 7.5 9.5 2.1 145 chr3L 365500 3` UTR CG1233 + chr3L 365572 3` UTR CG1233 + chr3L 365645 3` UTR CG1233 + chr3L_22_365001 chr3L_365001 RAL-304_100b 1900 chr3L 365536 365557 chr3L 365610 365668 18 105 9.0 7.5 8.2 2.0 132 chr3L 365536 3` UTR CG1233 + chr3L 365602 3` UTR CG1233 + chr3L 365668 3` UTR,3` UTR CG1233 +,CG13884 - chr3L_18_365001 chr3L_365001 RAL-304_100b 1901 chr3L 375229 375280 chr3L 375333 375361 21 99 0.0 12.0 6.0 3.0 132 chr3L 375229 intron trh - chr3L 375295 intron trh - chr3L 375361 intron trh - chr3L_21_375001 chr3L_375001 RAL-304_100b 1902 chr3L 390930 390986 chr3L 391061 391096 61 127 20.0 14.5 17.2 3.4 166 chr3L 390930 intron trh - chr3L 391013 intron trh - chr3L 391096 intron trh - chr3L_61_390001 chr3L_390001 RAL-304_100b 1903 chr3L 402666 402673 chr3L 409744 409751 297 8 7078 46.5 21.0 33.8 0.2 7085 chr3L 402666 intergenic not near genes chr3L 406208 intergenic not near genes chr3L 409751 intergenic not near genes chr3L_8_405001 chr3L_405001 RAL-304_100b 1904 chr3L 402674 402718 chr3L 409740 409766 297 51 7073 17.0 19.0 18.0 2.7 7092 chr3L 402674 intergenic not near genes chr3L 406220 intergenic not near genes chr3L 409766 intergenic not near genes chr3L_51_405001 chr3L_405001 RAL-304_100b 1905 chr3L 418965 418973 chr3L 419067 419075 4 102 50.0 18.5 34.2 0.1 110 chr3L 418965 intergenic not near genes chr3L 419020 intergenic not near genes chr3L 419075 intergenic not near genes chr3L_4_415001 chr3L_415001 RAL-304_100b 1906 chr3L 418974 419020 chr3L 419066 419122 66 98 23.0 17.5 20.2 3.1 148 chr3L 418974 intergenic not near genes chr3L 419048 intergenic not near genes chr3L 419122 intergenic not near genes chr3L_66_415001 chr3L_415001 RAL-304_100b 1907 chr3L 421030 421049 chr3L 421151 421170 19 121 27.5 14.0 20.8 0.9 140 chr3L 421030 intergenic not near genes chr3L 421100 intergenic not near genes chr3L 421170 intergenic not near genes chr3L_19_420001 chr3L_420001 RAL-304_100b 1908 chr3L 421050 421080 chr3L 421150 421200 17 118 13.5 13.5 13.5 1.2 150 chr3L 421050 intergenic not near genes chr3L 421125 intergenic not near genes chr3L 421200 intergenic not near genes chr3L_17_420001 chr3L_420001 RAL-304_100b 1909 chr3L 524719 524776 chr3L 524827 524883 18 106 10.0 5.5 7.8 2.0 164 chr3L 524719 intron klar - chr3L 524801 intron klar - chr3L 524883 intron klar - chr3L_18_520001 chr3L_520001 RAL-304_100b 1910 chr3L 563944 564001 chr3L 564148 564204 60 201 15.5 13.0 14.2 3.9 260 chr3L 563944 intron hipk + chr3L 564074 intron hipk + chr3L 564204 intron hipk + chr3L_60_560001 chr3L_560001 RAL-304_100b 1911 chr3L 659417 659443 chr3L 659519 659545 5 102 0.0 28.0 14.0 0.3 128 chr3L 659417 intergenic not near genes chr3L 659481 intergenic not near genes chr3L 659545 intergenic not near genes chr3L_5_655001 chr3L_655001 RAL-304_100b 1912 chr3L 662892 662947 chr3L 662993 663051 34 97 28.0 24.5 26.2 1.2 159 chr3L 662892 intergenic not near genes chr3L 662972 intergenic not near genes chr3L 663051 intergenic not near genes chr3L_34_660001 chr3L_660001 RAL-304_100b 1913 chr3L 665841 665864 chr3L 665949 665972 26 106 26.5 13.0 19.8 1.2 131 chr3L 665841 intergenic not near genes chr3L 665906 intergenic not near genes chr3L 665972 intergenic not near genes chr3L_26_665001 chr3L_665001 RAL-304_100b 1914 chr3L 665865 665883 chr3L 665947 665977 20 103 18.5 11.5 15.0 1.2 112 chr3L 665865 intergenic not near genes chr3L 665921 intergenic not near genes chr3L 665977 intergenic not near genes chr3L_20_665001 chr3L_665001 RAL-304_100b 1915 chr3L 709548 709597 chr3L 709654 709710 25 110 9.5 0.5 5.0 4.2 162 chr3L 709548 intron CkIIalpha-i3 - chr3L 709629 intron CkIIalpha-i3 - chr3L 709710 intron CkIIalpha-i3 - chr3L_25_705001 chr3L_705001 RAL-304_100b 1916 chr3L 728002 728007 chr3L 728103 728108 6 101 13.5 27.5 20.5 0.3 106 chr3L 728002 intergenic not near genes chr3L 728055 intergenic not near genes chr3L 728108 intergenic not near genes chr3L_6_725001 chr3L_725001 RAL-304_100b 1917 chr3L 789892 789941 chr3L 790402 790438 roo 31 509 9.0 15.0 12.0 2.4 546 chr3L 789892 intergenic not near genes chr3L 790165 intergenic not near genes chr3L 790438 intergenic not near genes chr3L_31_790001 chr3L_790001 RAL-304_100b 1918 chr3L 827506 827562 chr3L 827607 827625 32 98 5.5 9.0 7.2 3.9 119 chr3L 827506 intron,intron CG13900 -,CR45184 - chr3L 827566 intron,intron,3` UTR CG13900 -,CR45184 -,snoRNA:Me28S-G3113b - chr3L 827625 intron,intron CG13900 -,CR45184 - chr3L_32_825001 chr3L_825001 RAL-304_100b 1919 chr3L 854157 854205 chr3L 854260 854281 50 101 15.5 20.0 17.8 2.7 124 chr3L 854157 intron dpr20 - chr3L 854219 intron dpr20 - chr3L 854281 intron dpr20 - chr3L_50_850001 chr3L_850001 RAL-304_100b 1920 chr3L 857973 858016 chr3L 866479 866522 Tirant 28 8501 24.5 20.5 22.5 1.2 8549 chr3L 857973 intergenic not near genes chr3L 862248 intergenic not near genes chr3L 866522 5` UTR CG12502 + chr3L_28_860001 chr3L_860001 RAL-304_100b 1921 chr3L 858017 858029 chr3L 866478 866519 Tirant 10 8488 18.0 20.5 19.2 0.5 8502 chr3L 858017 intergenic not near genes chr3L 862268 intergenic not near genes chr3L 866519 5` UTR CG12502 + chr3L_10_860001 chr3L_860001 RAL-304_100b 1922 chr3L 899997 900020 chr3L 900087 900129 19 106 0.0 14.5 7.2 2.3 132 chr3L 899997 intergenic not near genes chr3L 900063 intergenic not near genes chr3L 900129 intergenic not near genes chr3L_19_900001 chr3L_900001 RAL-304_100b 1923 chr3L 905074 905087 chr3L 905181 905196 12 109 0.0 22.5 11.2 1.0 122 chr3L 905074 intergenic not near genes chr3L 905135 intergenic not near genes chr3L 905196 intergenic not near genes chr3L_12_905001 chr3L_905001 RAL-304_100b 1924 chr3L 905088 905093 chr3L 905158 905202 7 101 0.0 12.5 6.2 1.0 114 chr3L 905088 intergenic not near genes chr3L 905145 intergenic not near genes chr3L 905202 intergenic not near genes chr3L_7_905001 chr3L_905001 RAL-304_100b 1925 chr3L 925151 925205 chr3L 932602 932656 mdg1 41 7448 12.5 12.0 12.2 3.1 7505 chr3L 925151 intron Glut1 + chr3L 928904 intron Glut1 + chr3L 932656 intron Glut1 + chr3L_41_925001 chr3L_925001 RAL-304_100b 1926 chr3L 933883 933943 chr3L 934012 934069 32 124 10.5 10.0 10.2 2.9 186 chr3L 933883 intron Glut1 + chr3L 933976 intron Glut1 + chr3L 934069 intron Glut1 + chr3L_32_930001 chr3L_930001 RAL-304_100b 1927 chr3L 939751 939784 chr3L 940897 940930 jockey 31 1145 24.5 16.5 20.5 1.4 1179 chr3L 939751 intron Glut1 + chr3L 940340 intron Glut1 + chr3L 940930 intron Glut1 + chr3L_31_940001 chr3L_940001 RAL-304_100b 1928 chr3L 939785 939800 chr3L 940891 940924 jockey 19 1136 19.0 14.0 16.5 1.1 1139 chr3L 939785 intron Glut1 + chr3L 940354 intron Glut1 + chr3L 940924 intron Glut1 + chr3L_19_940001 chr3L_940001 RAL-304_100b 1929 chr3L 960992 961043 chr3L 961110 961161 18 116 2.5 11.0 6.8 2.3 169 chr3L 960992 intron Glut1 + chr3L 961076 intron Glut1 + chr3L 961161 intron Glut1 + chr3L_18_960001 chr3L_960001 RAL-304_100b 1930 chr3L 1001844 1001877 chr3L 1001947 1001979 17 102 17.5 28.0 22.8 0.7 135 chr3L 1001844 intron trio - chr3L 1001912 intron trio - chr3L 1001979 intron trio - chr3L_17_1000001 chr3L_1000001 RAL-304_100b 1931 chr3L 1003027 1003081 chr3L 1003129 1003177 50 98 18.5 18.0 18.2 2.6 150 chr3L 1003027 intron trio - chr3L 1003102 intron trio - chr3L 1003177 intron trio - chr3L_50_1000001 chr3L_1000001 RAL-304_100b 1932 chr3L 1015005 1015007 chr3L 1015141 1015144 5 137 51.5 21.5 36.5 0.1 139 chr3L 1015005 intron trio - chr3L 1015074 intron trio - chr3L 1015144 intron trio - chr3L_5_1015001 chr3L_1015001 RAL-304_100b 1933 chr3L 1015008 1015013 chr3L 1015140 1015148 7 135 48.5 21.0 34.8 0.2 140 chr3L 1015008 intron trio - chr3L 1015078 intron trio - chr3L 1015148 intron trio - chr3L_7_1015001 chr3L_1015001 RAL-304_100b 1934 chr3L 1015014 1015054 chr3L 1015139 1015176 44 129 15.5 21.0 18.2 2.3 162 chr3L 1015014 intron trio - chr3L 1015095 intron trio - chr3L 1015176 intron trio - chr3L_44_1015001 chr3L_1015001 RAL-304_100b 1935 chr3L 1031554 1031605 chr3L 1031655 1031680 35 89 30.5 19.0 24.8 1.4 126 chr3L 1031554 intron trio - chr3L 1031617 intron trio - chr3L 1031680 intron trio - chr3L_35_1030001 chr3L_1030001 RAL-304_100b 1936 chr3L 1031606 1031612 chr3L 1031652 1031701 7 73 28.0 19.5 23.8 0.3 95 chr3L 1031606 intron trio - chr3L 1031654 intron trio - chr3L 1031701 intron trio - chr3L_7_1030001 chr3L_1030001 RAL-304_100b 1937 chr3L 1033337 1033347 chr3L 1033458 1033468 4 121 0.0 0.0 0.0 4.0 131 chr3L 1033337 intron trio - chr3L 1033402 intron trio - chr3L 1033468 intron trio - chr3L_4_1030001 chr3L_1030001 RAL-304_100b 1938 chr3L 1047334 1047347 chr3L 1055171 1055184 412 5 7835 22.5 12.0 17.2 0.3 7850 chr3L 1047334 intron bab1 - chr3L 1051259 intron bab1 - chr3L 1055184 intron bab1 - chr3L_5_1050001 chr3L_1050001 RAL-304_100b 1939 chr3L 1047350 1047366 chr3L 1055167 1055182 412 10 7829 17.0 11.5 14.2 0.7 7832 chr3L 1047350 intron bab1 - chr3L 1051266 intron bab1 - chr3L 1055182 intron bab1 - chr3L_10_1050001 chr3L_1050001 RAL-304_100b 1940 chr3L 1047367 1047385 chr3L 1055162 1055214 412 20 7815 9.5 10.0 9.8 1.9 7847 chr3L 1047367 intron bab1 - chr3L 1051290 intron bab1 - chr3L 1055214 intron bab1 - chr3L_20_1050001 chr3L_1050001 RAL-304_100b 1941 chr3L 1103968 1104001 chr3L 1104184 1104217 35 215 31.0 22.5 26.8 1.3 249 chr3L 1103968 intergenic not near genes chr3L 1104092 intergenic not near genes chr3L 1104217 intergenic not near genes chr3L_35_1100001 chr3L_1100001 RAL-304_100b 1942 chr3L 1104002 1104014 chr3L 1104183 1104230 15 212 20.0 21.5 20.8 0.7 228 chr3L 1104002 intergenic not near genes chr3L 1104116 intergenic not near genes chr3L 1104230 intergenic not near genes chr3L_15_1100001 chr3L_1100001 RAL-304_100b 1943 chr3L 1145215 1145248 chr3L 1145319 1145352 27 103 22.5 0.0 11.2 2.2 137 chr3L 1145215 intron bab2 - chr3L 1145284 intron bab2 - chr3L 1145352 intron bab2 - chr3L_27_1145001 chr3L_1145001 RAL-304_100b 1944 chr3L 1154106 1154161 chr3L 1163281 1163330 roo 33 9174 16.5 15.5 16.0 1.9 9224 chr3L 1154106 intron bab2 - chr3L 1158718 intron bab2 - chr3L 1163330 intron bab2 - chr3L_33_1155001 chr3L_1155001 RAL-304_100b 1945 chr3L 1201986 1201997 chr3L 1203442 1203470 4 1464 91.5 67.0 79.2 0.0 1484 chr3L 1201986 intron,exon mwh +,CG32335 - chr3L 1202728 intron,exon mwh +,CG32335 - chr3L 1203470 intron,exon mwh +,CG9119 - chr3L_4_1200001 chr3L_1200001 RAL-304_100b 1946 chr3L 1219570 1219572 chr3L 1227328 1227330 412 4 7758 34.5 16.5 25.5 0.2 7760 chr3L 1219570 intron mwh + chr3L 1223450 intron mwh + chr3L 1227330 intron mwh + chr3L_4_1220001 chr3L_1220001 RAL-304_100b 1947 chr3L 1219573 1219623 chr3L 1227327 1227356 412 59 7750 11.0 16.5 13.8 4.0 7783 chr3L 1219573 intron mwh + chr3L 1223464 intron mwh + chr3L 1227356 intron mwh + chr3L_59_1220001 chr3L_1220001 RAL-304_100b 1948 chr3L 1236214 1236238 chr3L 1236316 1236339 19 100 14.5 0.5 7.5 2.2 125 chr3L 1236214 intron CG9194 + chr3L 1236276 intron CG9194 + chr3L 1236339 intron CG9194 + chr3L_19_1235001 chr3L_1235001 RAL-304_100b 1949 chr3L 1270718 1270769 chr3L 1270834 1270885 23 113 5.0 6.0 5.5 3.5 167 chr3L 1270718 intron CG9134 + chr3L 1270802 intron CG9134 + chr3L 1270885 intron CG9134 + chr3L_23_1270001 chr3L_1270001 RAL-304_100b 1950 chr3L 1284004 1284044 chr3L 1284129 1284169 14 124 12.0 9.5 10.8 1.2 165 chr3L 1284004 intron CG32333 + chr3L 1284086 intron CG32333 + chr3L 1284169 intron CG32333 + chr3L_14_1280001 chr3L_1280001 RAL-304_100b 1951 chr3L 1290006 1290053 chr3L 1290131 1290184 34 124 2.0 22.0 12.0 2.6 178 chr3L 1290006 exon CG32333 + chr3L 1290095 intron CG32333 + chr3L 1290184 intron CG32333 + chr3L_34_1290001 chr3L_1290001 RAL-304_100b 1952 chr3L 1368318 1368360 chr3L 1369565 1369606 21 1242 0.0 11.5 5.8 3.1 1288 chr3L 1368318 intron Ptp61F - chr3L 1368962 intron Ptp61F - chr3L 1369606 intron Ptp61F - chr3L_21_1365001 chr3L_1365001 RAL-304_100b 1953 chr3L 1385148 1385209 chr3L 1385261 1385322 59 112 13.0 11.5 12.2 4.5 174 chr3L 1385148 intron,intron Ptp61F -,ru + chr3L 1385235 intron,intron Ptp61F -,ru + chr3L 1385322 intron,intron Ptp61F -,ru + chr3L_59_1385001 chr3L_1385001 RAL-304_100b 1954 chr3L 1396713 1396758 chr3L 1396822 1396863 32 102 42.0 38.5 40.2 0.8 150 chr3L 1396713 intron Ptp61F - chr3L 1396788 intron Ptp61F - chr3L 1396863 intron Ptp61F - chr3L_32_1395001 chr3L_1395001 RAL-304_100b 1955 chr3L 1424761 1424772 chr3L 1430022 1430039 Rt1a 10 5262 13.0 27.0 20.0 0.5 5278 chr3L 1424761 intron Ptp61F - chr3L 1427400 intron Ptp61F - chr3L 1430039 intron Ptp61F - chr3L_10_1425001 chr3L_1425001 RAL-304_100b 1956 chr3L 1485712 1485743 chr3L 1486908 1486934 1360 30 1192 21.0 37.0 29.0 1.0 1222 chr3L 1485712 intron stet - chr3L 1486323 intron stet - chr3L 1486934 intron stet - chr3L_30_1485001 chr3L_1485001 RAL-304_100b 1957 chr3L 1505985 1506032 chr3L 1513592 1513644 17.6 47 7618 17.0 20.5 18.8 2.4 7659 chr3L 1505985 intron,intron Psa +,cue - chr3L 1509814 intron,intron Psa +,cue - chr3L 1513644 intron,intron Psa +,cue - chr3L_47_1505001 chr3L_1505001 RAL-304_100b 1958 chr3L 1531363 1531419 chr3L 1535836 1535889 67 4476 171.0 159.0 165.0 0.4 4526 chr3L 1531363 intron CG12090 - chr3L 1533626 exon CG12090 - chr3L 1535889 exon CG12091 - chr3L_67_1530001 chr3L_1530001 RAL-304_100b 1959 chr3L 1571444 1571494 chr3L 1571554 1571605 17 106 10.5 12.5 11.5 1.4 161 chr3L 1571444 intron CG12004 + chr3L 1571524 intron CG12004 + chr3L 1571605 intron CG12004 + chr3L_17_1570001 chr3L_1570001 RAL-304_100b 1960 chr3L 1584118 1584125 chr3L 1584225 1584232 5 107 0.0 22.0 11.0 0.4 114 chr3L 1584118 intron CG13917 + chr3L 1584175 intron CG13917 + chr3L 1584232 intron CG13917 + chr3L_5_1580001 chr3L_1580001 RAL-304_100b 1961 chr3L 1585900 1585937 chr3L 1586008 1586045 20 107 4.5 0.0 2.2 6.2 145 chr3L 1585900 intron CG13917 + chr3L 1585972 intron CG13917 + chr3L 1586045 intron CG13917 + chr3L_20_1585001 chr3L_1585001 RAL-304_100b 1962 chr3L 1684012 1684046 chr3L 1684099 1684107 29 89 11.5 16.0 13.8 2.0 95 chr3L 1684012 intron CG7991 + chr3L 1684060 intron CG7991 + chr3L 1684107 intron CG7991 + chr3L_29_1680001 chr3L_1680001 RAL-304_100b 1963 chr3L 1688225 1688270 chr3L 1688379 1688424 8 153 9.0 4.5 6.8 1.0 199 chr3L 1688225 intron CG7991 + chr3L 1688324 intron CG7991 + chr3L 1688424 intron CG7991 + chr3L_8_1685001 chr3L_1685001 RAL-304_100b 1964 chr3L 1728493 1728519 chr3L 1728603 1728629 22 109 25.5 11.5 18.5 1.1 136 chr3L 1728493 intron drpr - chr3L 1728561 intron drpr - chr3L 1728629 intron drpr - chr3L_22_1725001 chr3L_1725001 RAL-304_100b 1965 chr3L 1728520 1728552 chr3L 1728600 1728662 36 101 12.5 11.0 11.8 2.8 142 chr3L 1728520 intron drpr - chr3L 1728591 intron drpr - chr3L 1728662 intron drpr - chr3L_36_1725001 chr3L_1725001 RAL-304_100b 1966 chr3L 1740835 1740842 chr3L 1741103 1741110 pogo 7 268 34.0 14.5 24.2 0.3 275 chr3L 1740835 intron Gk + chr3L 1740972 intron Gk + chr3L 1741110 intron Gk + chr3L_7_1740001 chr3L_1740001 RAL-304_100b 1967 chr3L 1740846 1740884 chr3L 1741099 1741132 pogo 17 259 15.0 12.5 13.8 1.1 286 chr3L 1740846 intron Gk + chr3L 1740989 intron Gk + chr3L 1741132 intron Gk + chr3L_17_1740001 chr3L_1740001 RAL-304_100b 1968 chr3L 1821617 1821648 chr3L 1821719 1821755 41 106 13.5 18.5 16.0 2.4 138 chr3L 1821617 intron GV1 + chr3L 1821686 intron GV1 + chr3L 1821755 intron GV1 + chr3L_41_1820001 chr3L_1820001 RAL-304_100b 1969 chr3L 1841559 1841583 chr3L 1841660 1841693 12 108 13.0 16.0 14.5 0.8 134 chr3L 1841559 intron Cpr62Bc - chr3L 1841626 intron Cpr62Bc - chr3L 1841693 intron Cpr62Bc - chr3L_12_1840001 chr3L_1840001 RAL-304_100b 1970 chr3L 1922440 1922448 chr3L 1922543 1922551 8 102 57.5 35.0 46.2 0.2 111 chr3L 1922440 intron Dbx + chr3L 1922496 intron Dbx + chr3L 1922551 intron Dbx + chr3L_8_1920001 chr3L_1920001 RAL-304_100b 1971 chr3L 1922449 1922453 chr3L 1922536 1922556 10 96 55.0 31.0 43.0 0.2 107 chr3L 1922449 intron Dbx + chr3L 1922502 intron Dbx + chr3L 1922556 intron Dbx + chr3L_10_1920001 chr3L_1920001 RAL-304_100b 1972 chr3L 1922455 1922468 chr3L 1922531 1922536 14 92 50.0 37.5 43.8 0.3 81 chr3L 1922455 intron Dbx + chr3L 1922496 intron Dbx + chr3L 1922536 intron Dbx + chr3L_14_1920001 chr3L_1920001 RAL-304_100b 1973 chr3L 1924938 1924976 chr3L 1925101 1925139 34 157 18.0 19.5 18.8 1.7 201 chr3L 1924938 exon Dbx + chr3L 1925038 intron Dbx + chr3L 1925139 intron Dbx + chr3L_34_1925001 chr3L_1925001 RAL-304_100b 1974 chr3L 2015750 2015773 chr3L 2015853 2015856 7 98 23.5 0.0 11.8 0.5 106 chr3L 2015750 intergenic not near genes chr3L 2015803 intergenic not near genes chr3L 2015856 intergenic not near genes chr3L_7_2015001 chr3L_2015001 RAL-304_100b 1975 chr3L 2035104 2035306 chr3L 2035305 2035408 7 115 0.0 0.0 0.0 7.0 304 chr3L 2035104 intergenic not near genes chr3L 2035256 intergenic not near genes chr3L 2035408 intergenic not near genes chr3L_7_2035001 chr3L_2035001 RAL-304_100b 1976 chr3L 2108088 2108106 chr3L 2108198 2108216 6 110 0.0 0.0 0.0 6.0 128 chr3L 2108088 intron sls - chr3L 2108152 intron sls - chr3L 2108216 intron sls - chr3L_6_2105001 chr3L_2105001 RAL-304_100b 1977 chr3L 2108243 2108249 chr3L 2113452 2113478 copia 4 5224 0.0 4.5 2.2 1.2 5235 chr3L 2108243 intron sls - chr3L 2110860 intron sls - chr3L 2113478 intron sls - chr3L_4_2110001 chr3L_2110001 RAL-304_100b 1978 chr3L 2199784 2199821 chr3L 2199885 2199922 29 100 8.0 15.0 11.5 2.3 138 chr3L 2199784 intergenic not near genes chr3L 2199853 intergenic not near genes chr3L 2199922 intergenic not near genes chr3L_29_2195001 chr3L_2195001 RAL-304_100b 1979 chr3L 2307977 2308033 chr3L 2308108 2308164 42 127 14.0 12.5 13.2 3.0 187 chr3L 2307977 intergenic not near genes chr3L 2308070 intergenic not near genes chr3L 2308164 intergenic not near genes chr3L_42_2305001 chr3L_2305001 RAL-304_100b 1980 chr3L 2321133 2321193 chr3L 2321235 2321295 51 100 19.0 14.0 16.5 2.9 162 chr3L 2321133 intergenic not near genes chr3L 2321214 intergenic not near genes chr3L 2321295 intergenic not near genes chr3L_51_2320001 chr3L_2320001 RAL-304_100b 1981 chr3L 2332960 2332966 chr3L 2333250 2333256 6 293 39.5 12.5 26.0 0.2 296 chr3L 2332960 intron MsR1 + chr3L 2333108 intron MsR1 + chr3L 2333256 intron MsR1 + chr3L_6_2330001 chr3L_2330001 RAL-304_100b 1982 chr3L 2332967 2333010 chr3L 2333247 2333305 39 286 12.5 12.5 12.5 2.9 338 chr3L 2332967 intron MsR1 + chr3L 2333136 intron MsR1 + chr3L 2333305 intron MsR1 + chr3L_39_2330001 chr3L_2330001 RAL-304_100b 1983 chr3L 2411315 2411344 chr3L 2411415 2411449 37 101 11.5 18.5 15.0 2.3 134 chr3L 2411315 intron CG45186 + chr3L 2411382 intron CG45186 + chr3L 2411449 intron CG45186 + chr3L_37_2410001 chr3L_2410001 RAL-304_100b 1984 chr3L 2447481 2447489 chr3L 2456662 2456670 roo 11 9180 49.0 17.5 33.2 0.3 9189 chr3L 2447481 intron CG45186 + chr3L 2452076 intron CG45186 + chr3L 2456670 intron CG45186 + chr3L_11_2450001 chr3L_2450001 RAL-304_100b 1985 chr3L 2447490 2447506 chr3L 2456661 2456687 roo 15 9173 40.0 17.5 28.8 0.5 9197 chr3L 2447490 intron CG45186 + chr3L 2452088 intron CG45186 + chr3L 2456687 intron CG45186 + chr3L_15_2450001 chr3L_2450001 RAL-304_100b 1986 chr3L 2447507 2447537 chr3L 2456658 2456665 roo 34 9168 21.0 14.5 17.8 1.8 9158 chr3L 2447507 intron CG45186 + chr3L 2452086 intron CG45186 + chr3L 2456665 intron CG45186 + chr3L_34_2450001 chr3L_2450001 RAL-304_100b 1987 chr3L 2467428 2467483 chr3L 2467550 2467605 11 121 12.5 7.0 9.8 1.0 177 chr3L 2467428 intron CG45186 + chr3L 2467516 intron CG45186 + chr3L 2467605 intron CG45186 + chr3L_11_2465001 chr3L_2465001 RAL-304_100b 1988 chr3L 2515416 2515430 chr3L 2515523 2515525 9 106 7.0 30.5 18.8 0.5 109 chr3L 2515416 intron Spn - chr3L 2515470 intron Spn - chr3L 2515525 intron Spn - chr3L_9_2515001 chr3L_2515001 RAL-304_100b 1989 chr3L 2534614 2534626 chr3L 2534706 2534733 16 104 0.5 19.5 10.0 1.5 119 chr3L 2534614 intron Spn - chr3L 2534674 intron Spn - chr3L 2534733 exon Spn - chr3L_16_2530001 chr3L_2530001 RAL-304_100b 1990 chr3L 2534627 2534644 chr3L 2534703 2534737 14 99 0.5 18.0 9.2 1.4 110 chr3L 2534627 intron Spn - chr3L 2534682 intron Spn - chr3L 2534737 exon Spn - chr3L_14_2530001 chr3L_2530001 RAL-304_100b 1991 chr3L 2575984 2575987 chr3L 2576092 2576095 5 108 36.5 24.5 30.5 0.2 111 chr3L 2575984 intron msn - chr3L 2576040 intron msn - chr3L 2576095 intron msn - chr3L_5_2575001 chr3L_2575001 RAL-304_100b 1992 chr3L 2579314 2579361 chr3L 2579430 2579477 32 113 12.5 13.0 12.8 2.3 163 chr3L 2579314 intron msn - chr3L 2579396 intron msn - chr3L 2579477 exon msn - chr3L_32_2575001 chr3L_2575001 RAL-304_100b 1993 chr3L 2581873 2581907 chr3L 2581992 2582026 24 116 16.5 9.5 13.0 1.7 153 chr3L 2581873 intron msn - chr3L 2581950 intron msn - chr3L 2582026 intron msn - chr3L_24_2580001 chr3L_2580001 RAL-304_100b 1994 chr3L 2617237 2617256 chr3L 2617348 2617367 17 110 12.0 16.5 14.2 1.1 130 chr3L 2617237 intron Pxn - chr3L 2617302 intron Pxn - chr3L 2617367 intron Pxn - chr3L_17_2615001 chr3L_2615001 RAL-304_100b 1995 chr3L 2626388 2626422 chr3L 2626535 2626540 27 147 19.0 9.0 14.0 1.8 152 chr3L 2626388 intron Pxn - chr3L 2626464 intron Pxn - chr3L 2626540 intron Pxn - chr3L_27_2625001 chr3L_2625001 RAL-304_100b 1996 chr3L 2680487 2680526 chr3L 2680592 2680615 23 101 19.0 0.0 9.5 2.2 128 chr3L 2680487 intron Fife - chr3L 2680551 intron Fife - chr3L 2680615 intron Fife - chr3L_23_2680001 chr3L_2680001 RAL-304_100b 1997 chr3L 2683920 2683973 chr3L 2684021 2684072 36 99 12.5 10.0 11.2 3.0 152 chr3L 2683920 intron Fife - chr3L 2683996 intron Fife - chr3L 2684072 intron Fife - chr3L_36_2680001 chr3L_2680001 RAL-304_100b 1998 chr3L 2719513 2719560 chr3L 2719640 2719687 30 126 9.0 8.5 8.8 3.1 174 chr3L 2719513 3` UTR Mrtf - chr3L 2719600 3` UTR Mrtf - chr3L 2719687 3` UTR Mrtf - chr3L_30_2715001 chr3L_2715001 RAL-304_100b 1999 chr3L 2751431 2751461 chr3L 2755751 2755781 F-element 5 4320 16.0 17.0 16.5 0.3 4350 chr3L 2751431 intron Mrtf - chr3L 2753606 intron Mrtf - chr3L 2755781 intron Mrtf - chr3L_5_2750001 chr3L_2750001 RAL-304_100b 2000 chr3L 2835861 2835870 chr3L 2835963 2835975 7 103 51.0 42.0 46.5 0.1 114 chr3L 2835861 intron CG43444 - chr3L 2835918 intron CG43444 - chr3L 2835975 intron CG43444 - chr3L_7_2835001 chr3L_2835001 RAL-304_100b 2001 chr3L 2854452 2854503 chr3L 2854555 2854590 50 97 17.5 10.5 14.0 3.3 138 chr3L 2854452 intron CG43444 - chr3L 2854521 intron CG43444 - chr3L 2854590 intron CG43444 - chr3L_50_2850001 chr3L_2850001 RAL-304_100b 2002 chr3L 2896511 2896518 chr3L 2896613 2896620 4 102 37.5 24.5 31.0 0.1 109 chr3L 2896511 intron Shab + chr3L 2896566 intron Shab + chr3L 2896620 intron Shab + chr3L_4_2895001 chr3L_2895001 RAL-304_100b 2003 chr3L 2896520 2896540 chr3L 2896612 2896642 20 99 26.5 24.0 25.2 0.8 122 chr3L 2896520 intron Shab + chr3L 2896581 intron Shab + chr3L 2896642 intron Shab + chr3L_20_2895001 chr3L_2895001 RAL-304_100b 2004 chr3L 2927813 2927871 chr3L 2936115 2936173 Tirant 41 8299 8.5 8.0 8.2 4.5 8360 chr3L 2927813 intron Shab + chr3L 2931993 intron Shab + chr3L 2936173 intron Shab + chr3L_41_2930001 chr3L_2930001 RAL-304_100b 2005 chr3L 2966162 2966195 chr3L 2966282 2966289 21 118 17.5 10.5 14.0 1.4 127 chr3L 2966162 intergenic not near genes chr3L 2966226 intergenic not near genes chr3L 2966289 intergenic not near genes chr3L_21_2965001 chr3L_2965001 RAL-304_100b 2006 chr3L 2966704 2966722 chr3L 2974153 2974171 mdg1 11 7449 27.5 5.5 16.5 0.6 7467 chr3L 2966704 intergenic not near genes chr3L 2970438 intergenic not near genes chr3L 2974171 intergenic not near genes chr3L_11_2970001 chr3L_2970001 RAL-304_100b 2007 chr3L 2983272 2983281 chr3L 2983379 2983388 10 106 34.0 0.0 17.0 0.6 116 chr3L 2983272 exon CG2107 + chr3L 2983330 3` UTR CG2107 + chr3L 2983388 3` UTR CG2107 + chr3L_10_2980001 chr3L_2980001 RAL-304_100b 2008 chr3L 2983287 2983304 chr3L 2983374 2983381 6 94 22.0 0.5 11.2 0.5 94 chr3L 2983287 exon CG2107 + chr3L 2983334 3` UTR CG2107 + chr3L 2983381 3` UTR CG2107 + chr3L_6_2980001 chr3L_2980001 RAL-304_100b 2009 chr3L 3028994 3029020 chr3L 3029122 3029148 17 128 9.5 16.0 12.8 1.2 154 chr3L 3028994 intergenic not near genes chr3L 3029071 intergenic not near genes chr3L 3029148 intergenic not near genes chr3L_17_3025001 chr3L_3025001 RAL-304_100b 2010 chr3L 3030951 3030958 chr3L 3031056 3031063 8 105 11.0 3.0 7.0 1.0 112 chr3L 3030951 intergenic not near genes chr3L 3031007 intergenic not near genes chr3L 3031063 intergenic not near genes chr3L_8_3030001 chr3L_3030001 RAL-304_100b 2011 chr3L 3040299 3040329 chr3L 3042113 3042138 S-element 6 1808 15.5 0.5 8.0 0.7 1839 chr3L 3040299 3` UTR CG2162 + chr3L 3041218 intergenic not near genes chr3L 3042138 intergenic Jafrac2 + chr3L_6_3040001 chr3L_3040001 RAL-304_100b 2012 chr3L 3040330 3040356 chr3L 3042112 3042174 S-element 4 1794 11.0 0.5 5.8 0.6 1844 chr3L 3040330 3` UTR CG2162 + chr3L 3041252 intergenic not near genes chr3L 3042174 intergenic Jafrac2 + chr3L_4_3040001 chr3L_3040001 RAL-304_100b 2013 chr3L 3050871 3050928 chr3L 3050983 3051040 18 112 0.0 9.0 4.5 3.3 169 chr3L 3050871 intron CG32485 + chr3L 3050956 intron CG32485 + chr3L 3051040 exon CG32485 + chr3L_18_3050001 chr3L_3050001 RAL-304_100b 2014 chr3L 3051722 3051757 chr3L 3051989 3052010 pogo 17 263 23.5 17.0 20.2 0.8 288 chr3L 3051722 3` UTR CG32485 + chr3L 3051866 intergenic CG32485 + chr3L 3052010 intergenic CG32485 + chr3L_17_3050001 chr3L_3050001 RAL-304_100b 2015 chr3L 3061259 3061282 chr3L 3069867 3069890 Tirant 20 8605 41.0 20.5 30.8 0.6 8631 chr3L 3061259 intron CG32486 - chr3L 3065574 intron CG32486 - chr3L 3069890 intron CG32486 - chr3L_20_3065001 chr3L_3065001 RAL-304_100b 2016 chr3L 3061283 3061315 chr3L 3069865 3069923 Tirant 37 8598 18.5 19.0 18.8 1.9 8640 chr3L 3061283 intron CG32486 - chr3L 3065603 intron CG32486 - chr3L 3069923 intron CG32486 - chr3L_37_3065001 chr3L_3065001 RAL-304_100b 2017 chr3L 3102799 3102805 chr3L 3102903 3102907 7 108 43.0 21.0 32.0 0.2 108 chr3L 3102799 intron Cht7 - chr3L 3102853 intron Cht7 - chr3L 3102907 intron Cht7 - chr3L_7_3100001 chr3L_3100001 RAL-304_100b 2018 chr3L 3102806 3102850 chr3L 3102901 3102901 49 98 19.0 20.5 19.8 2.4 95 chr3L 3102806 intron Cht7 - chr3L 3102854 intron Cht7 - chr3L 3102901 intron Cht7 - chr3L_49_3100001 chr3L_3100001 RAL-304_100b 2019 chr3L 3107254 3107278 chr3L 3107365 3107375 10 107 13.0 40.0 26.5 0.4 121 chr3L 3107254 intergenic Cht7 - chr3L 3107314 intergenic Cht7 - chr3L 3107375 intergenic Cht7 - chr3L_10_3105001 chr3L_3105001 RAL-304_100b 2020 chr3L 3128165 3128216 chr3L 3128276 3128327 39 108 10.5 11.0 10.8 3.3 162 chr3L 3128165 intergenic prominin-like - chr3L 3128246 intergenic not near genes chr3L 3128327 intergenic not near genes chr3L_39_3125001 chr3L_3125001 RAL-304_100b 2021 chr3L 3259818 3259825 chr3L 3259936 3259950 8 124 4.5 20.0 12.2 0.6 132 chr3L 3259818 intron ckd + chr3L 3259884 intron ckd + chr3L 3259950 intron ckd + chr3L_8_3255001 chr3L_3255001 RAL-304_100b 2022 chr3L 3259828 3259833 chr3L 3259926 3259958 8 117 3.5 16.0 9.8 0.7 130 chr3L 3259828 intron ckd + chr3L 3259893 intron ckd + chr3L 3259958 intron ckd + chr3L_8_3255001 chr3L_3255001 RAL-304_100b 2023 chr3L 3281412 3281477 chr3L 3281933 3281954 Doc 32 516 15.0 16.0 15.5 1.9 542 chr3L 3281412 intron CG12017 + chr3L 3281683 intron CG12017 + chr3L 3281954 intron CG12017 + chr3L_32_3280001 chr3L_3280001 RAL-304_100b 2024 chr3L 3314111 3314168 chr3L 3314270 3314327 88 156 28.0 30.5 29.2 2.9 216 chr3L 3314111 intergenic ZnT63C +,Drsl2 + chr3L 3314219 intergenic Drsl2 +,ZnT63C + chr3L 3314327 intergenic Drsl2 +,ZnT63C + chr3L_88_3310001 chr3L_3310001 RAL-304_100b 2025 chr3L 3312269 3312271 chr3L 3315525 3315537 14 3257 107.5 113.0 110.2 0.1 3268 chr3L 3312269 exon ZnT63C + chr3L 3313903 3` UTR ZnT63C + chr3L 3315537 intergenic Drsl4 +,Drsl3 + chr3L_14_3310001 chr3L_3310001 RAL-304_100b 2026 chr3L 3312268 3312268 chr3L 3315539 3315584 47 3268 104.5 108.5 106.5 0.4 3316 chr3L 3312268 exon ZnT63C + chr3L 3313926 3` UTR ZnT63C + chr3L 3315584 intergenic Drsl4 +,Drsl3 + chr3L_47_3310001 chr3L_3310001 RAL-304_100b 2027 chr3L 3315953 3316009 chr3L 3316079 3316134 15 124 8.0 6.5 7.2 1.8 181 chr3L 3315953 intergenic Drsl4 + chr3L 3316044 intergenic Drsl4 + chr3L 3316134 intergenic Drsl4 + chr3L_15_3315001 chr3L_3315001 RAL-304_100b 2028 chr3L 3392972 3392979 chr3L 3393080 3393087 7 108 37.5 11.5 24.5 0.3 115 chr3L 3392972 intergenic not near genes chr3L 3393030 intergenic not near genes chr3L 3393087 intergenic not near genes chr3L_7_3390001 chr3L_3390001 RAL-304_100b 2029 chr3L 3392984 3393030 chr3L 3393078 3393138 20 104 8.5 11.5 10.0 1.8 154 chr3L 3392984 intergenic not near genes chr3L 3393061 intergenic not near genes chr3L 3393138 intergenic not near genes chr3L_20_3390001 chr3L_3390001 RAL-304_100b 2030 chr3L 3475053 3475058 chr3L 3475522 3475527 jockey 5 468 41.5 19.0 30.2 0.2 474 chr3L 3475053 intron CG42324 + chr3L 3475290 intron CG42324 + chr3L 3475527 intron CG42324 + chr3L_5_3475001 chr3L_3475001 RAL-304_100b 2031 chr3L 3475059 3475113 chr3L 3475521 3475556 jockey 49 462 11.0 17.0 14.0 3.3 497 chr3L 3475059 intron CG42324 + chr3L 3475308 intron CG42324 + chr3L 3475556 intron CG42324 + chr3L_49_3475001 chr3L_3475001 RAL-304_100b 2032 chr3L 3494171 3494205 chr3L 3494273 3494307 23 101 2.0 17.5 9.8 2.1 136 chr3L 3494171 intron CG42324 + chr3L 3494239 intron CG42324 + chr3L 3494307 intron CG42324 + chr3L_23_3490001 chr3L_3490001 RAL-304_100b 2033 chr3L 3593871 3593896 chr3L 3593981 3594005 24 109 9.0 0.5 4.8 4.1 134 chr3L 3593871 intron,5` UTR Eip63E +,snRNA:U7 + chr3L 3593938 intron Eip63E + chr3L 3594005 intron Eip63E + chr3L_24_3590001 chr3L_3590001 RAL-304_100b 2034 chr3L 3598185 3598241 chr3L 3598293 3598293 38 104 18.5 17.0 17.8 2.0 108 chr3L 3598185 exon Eip63E + chr3L 3598239 exon Eip63E + chr3L 3598293 intron Eip63E + chr3L_38_3595001 chr3L_3595001 RAL-304_100b 2035 chr3L 3601275 3601278 chr3L 3606611 3606614 copia 4 5336 29.0 18.5 23.8 0.2 5339 chr3L 3601275 intron Eip63E + chr3L 3603944 intron Eip63E + chr3L 3606614 intron Eip63E + chr3L_4_3600001 chr3L_3600001 RAL-304_100b 2036 chr3L 3601281 3601294 chr3L 3606609 3606630 copia 11 5333 22.0 17.5 19.8 0.5 5349 chr3L 3601281 intron Eip63E + chr3L 3603956 intron Eip63E + chr3L 3606630 intron Eip63E + chr3L_11_3600001 chr3L_3600001 RAL-304_100b 2037 chr3L 3601297 3601331 chr3L 3606608 3606667 copia 19 5333 9.5 17.5 13.5 1.3 5370 chr3L 3601297 intron Eip63E + chr3L 3603982 intron Eip63E + chr3L 3606667 intron Eip63E + chr3L_19_3600001 chr3L_3600001 RAL-304_100b 2038 chr3L 3609758 3609815 chr3L 3609862 3609927 29 109 14.0 6.0 10.0 2.6 169 chr3L 3609758 3` UTR Eip63E + chr3L 3609842 3` UTR Eip63E + chr3L 3609927 3` UTR Eip63E + chr3L_29_3605001 chr3L_3605001 RAL-304_100b 2039 chr3L 3619388 3619430 chr3L 3619491 3619549 24 118 14.0 6.5 10.2 2.1 161 chr3L 3619388 intergenic not near genes chr3L 3619468 intergenic not near genes chr3L 3619549 intergenic not near genes chr3L_24_3615001 chr3L_3615001 RAL-304_100b 2040 chr3L 3627211 3627264 chr3L 3627341 3627394 25 130 5.0 6.5 5.8 3.7 183 chr3L 3627211 intron dar1 + chr3L 3627302 intron dar1 + chr3L 3627394 intron dar1 + chr3L_25_3625001 chr3L_3625001 RAL-304_100b 2041 chr3L 3763732 3763766 chr3L 3763838 3763867 15 103 16.5 0.0 8.2 1.6 135 chr3L 3763732 intron CG32264 - chr3L 3763800 intron CG32264 - chr3L 3763867 intron CG32264 - chr3L_15_3760001 chr3L_3760001 RAL-304_100b 2042 chr3L 3766712 3766748 chr3L 3766823 3766842 20 109 15.5 0.0 7.8 2.3 130 chr3L 3766712 intron CG32264 - chr3L 3766777 intron CG32264 - chr3L 3766842 intron CG32264 - chr3L_20_3765001 chr3L_3765001 RAL-304_100b 2043 chr3L 3773248 3773289 chr3L 3773365 3773406 33 115 10.0 20.0 15.0 2.1 158 chr3L 3773248 intron CG32264 - chr3L 3773327 intron CG32264 - chr3L 3773406 intron CG32264 - chr3L_33_3770001 chr3L_3770001 RAL-304_100b 2044 chr3L 3773604 3773668 chr3L 3773708 3773774 12 101 0.0 0.0 0.0 12.0 170 chr3L 3773604 intron CG32264 - chr3L 3773689 intron CG32264 - chr3L 3773774 intron CG32264 - chr3L_12_3770001 chr3L_3770001 RAL-304_100b 2045 chr3L 3783254 3783265 chr3L 3783351 3783367 7 100 21.0 14.0 17.5 0.4 113 chr3L 3783254 intron CG32264 - chr3L 3783310 intron CG32264 - chr3L 3783367 intron CG32264 - chr3L_7_3780001 chr3L_3780001 RAL-304_100b 2046 chr3L 3797221 3797232 chr3L 3797329 3797340 7 108 1.5 9.0 5.2 1.1 119 chr3L 3797221 intron CG32264 - chr3L 3797280 intron CG32264 - chr3L 3797340 intron CG32264 - chr3L_7_3795001 chr3L_3795001 RAL-304_100b 2047 chr3L 3797235 3797266 chr3L 3797323 3797357 21 103 1.5 7.0 4.2 4.0 122 chr3L 3797235 intron CG32264 - chr3L 3797296 intron CG32264 - chr3L 3797357 intron CG32264 - chr3L_21_3795001 chr3L_3795001 RAL-304_100b 2048 chr3L 3833713 3833769 chr3L 3833979 3834035 pogo 32 265 12.0 6.5 9.2 3.1 322 chr3L 3833713 intron enc + chr3L 3833874 intron enc + chr3L 3834035 intron enc + chr3L_32_3830001 chr3L_3830001 RAL-304_100b 2049 chr3L 3877444 3877457 chr3L 3877590 3877605 6 147 1.0 21.5 11.2 0.5 161 chr3L 3877444 intergenic not near genes chr3L 3877524 intergenic not near genes chr3L 3877605 intergenic not near genes chr3L_6_3875001 chr3L_3875001 RAL-304_100b 2050 chr3L 3877459 3877468 chr3L 3877586 3877616 9 144 0.0 18.5 9.2 0.9 157 chr3L 3877459 intergenic not near genes chr3L 3877538 intergenic not near genes chr3L 3877616 intergenic not near genes chr3L_9_3875001 chr3L_3875001 RAL-304_100b 2051 chr3L 3881688 3881742 chr3L 3881798 3881826 35 103 7.5 0.5 4.0 7.0 138 chr3L 3881688 intergenic not near genes chr3L 3881757 intergenic not near genes chr3L 3881826 intergenic not near genes chr3L_35_3880001 chr3L_3880001 RAL-304_100b 2052 chr3L 3912479 3912514 chr3L 3912580 3912595 25 97 18.0 25.5 21.8 1.1 116 chr3L 3912479 intron Eip63F-1 - chr3L 3912537 intron Eip63F-1 - chr3L 3912595 intron Eip63F-1 - chr3L_25_3910001 chr3L_3910001 RAL-304_100b 2053 chr3L 4013882 4013932 chr3L 4014089 4014117 66 202 11.5 24.0 17.8 3.5 235 chr3L 4013882 intergenic not near genes chr3L 4014000 intergenic not near genes chr3L 4014117 intergenic not near genes chr3L_66_4010001 chr3L_4010001 RAL-304_100b 2054 chr3L 4015712 4015743 chr3L 4015818 4015851 32 106 25.0 7.5 16.2 1.9 139 chr3L 4015712 intergenic not near genes chr3L 4015782 intergenic not near genes chr3L 4015851 intergenic not near genes chr3L_32_4015001 chr3L_4015001 RAL-304_100b 2055 chr3L 4015744 4015765 chr3L 4015817 4015873 22 104 12.5 7.5 10.0 2.0 129 chr3L 4015744 intergenic not near genes chr3L 4015808 intergenic not near genes chr3L 4015873 intergenic not near genes chr3L_22_4015001 chr3L_4015001 RAL-304_100b 2056 chr3L 4082661 4082667 chr3L 4082759 4082771 5 103 33.0 15.0 24.0 0.2 110 chr3L 4082661 intron Gad1 - chr3L 4082716 intron Gad1 - chr3L 4082771 intron Gad1 - chr3L_5_4080001 chr3L_4080001 RAL-304_100b 2057 chr3L 4082670 4082704 chr3L 4082754 4082808 29 93 17.0 12.5 14.8 1.8 138 chr3L 4082670 intron Gad1 - chr3L 4082739 intron Gad1 - chr3L 4082808 intron Gad1 - chr3L_29_4080001 chr3L_4080001 RAL-304_100b 2058 chr3L 4146803 4146841 chr3L 4146905 4146948 33 104 0.0 14.0 7.0 4.1 145 chr3L 4146803 intergenic not near genes chr3L 4146876 intergenic not near genes chr3L 4146948 intergenic not near genes chr3L_33_4145001 chr3L_4145001 RAL-304_100b 2059 chr3L 4233068 4233098 chr3L 4233181 4233210 14 111 5.5 10.0 7.8 1.6 142 chr3L 4233068 intron ImpL2 - chr3L 4233139 intron ImpL2 - chr3L 4233210 intron ImpL2 - chr3L_14_4230001 chr3L_4230001 RAL-304_100b 2060 chr3L 4238733 4238776 chr3L 4238844 4238867 8 109 0.0 0.5 0.2 6.7 134 chr3L 4238733 intergenic not near genes chr3L 4238800 intergenic not near genes chr3L 4238867 intergenic not near genes chr3L_8_4235001 chr3L_4235001 RAL-304_100b 2061 chr3L 4328727 4328765 chr3L 4336249 4336287 412 23 7520 11.0 17.5 14.2 1.5 7560 chr3L 4328727 intron Cip4 - chr3L 4332507 intron Cip4 - chr3L 4336287 exon Cip4 - chr3L_23_4330001 chr3L_4330001 RAL-304_100b 2062 chr3L 4341329 4341335 chr3L 21448026 21448026 22 17106694 58.5 51.5 55.0 0.4 17106697 chr3L 4341329 intron Cip4 - chr3L 12894678 3` UTR CG14118 + chr3L 21448026 3` UTR Syx7 + chr3L_22_12890001 chr3L_12890001 RAL-304_100b 2063 chr3L 4360971 4360974 chr3L 4362845 4362848 4 1874 0.5 0.5 0.5 2.7 1877 chr3L 4360971 intron Cip4 - chr3L 4361910 intron Cip4 - chr3L 4362848 intron Cip4 - chr3L_4_4360001 chr3L_4360001 RAL-304_100b 2064 chr3L 4373786 4373835 chr3L 4373884 4373937 28 101 6.0 8.0 7.0 3.5 151 chr3L 4373786 intron DopEcR - chr3L 4373862 intron DopEcR - chr3L 4373937 intron DopEcR - chr3L_28_4370001 chr3L_4370001 RAL-304_100b 2065 chr3L 4397961 4397971 chr3L 4398193 4398215 14 243 32.0 40.5 36.2 0.4 254 chr3L 4397961 intron slow + chr3L 4398088 intron slow + chr3L 4398215 intron slow + chr3L_14_4395001 chr3L_4395001 RAL-304_100b 2066 chr3L 4397972 4397983 chr3L 4398166 4398213 15 228 22.0 17.5 19.8 0.7 241 chr3L 4397972 intron slow + chr3L 4398092 intron slow + chr3L 4398213 intron slow + chr3L_15_4395001 chr3L_4395001 RAL-304_100b 2067 chr3L 4438722 4438745 chr3L 4438827 4438850 8 102 32.5 27.5 30.0 0.3 128 chr3L 4438722 intergenic CG15021 + chr3L 4438786 intergenic CG15021 + chr3L 4438850 intergenic not near genes chr3L_8_4435001 chr3L_4435001 RAL-304_100b 2068 chr3L 4440729 4440767 chr3L 4440832 4440873 8 103 3.5 0.0 1.8 2.9 144 chr3L 4440729 intergenic not near genes chr3L 4440801 intergenic not near genes chr3L 4440873 intergenic not near genes chr3L_8_4440001 chr3L_4440001 RAL-304_100b 2069 chr3L 4503880 4503935 chr3L 4503982 4504007 17 100 10.5 4.0 7.2 2.1 127 chr3L 4503880 intron NT1 - chr3L 4503944 intron NT1 - chr3L 4504007 intron NT1 - chr3L_17_4500001 chr3L_4500001 RAL-304_100b 2070 chr3L 4519400 4519410 chr3L 4519500 4519512 9 102 22.5 12.0 17.2 0.5 112 chr3L 4519400 intron Tie - chr3L 4519456 intron Tie - chr3L 4519512 intron Tie - chr3L_9_4515001 chr3L_4515001 RAL-304_100b 2071 chr3L 4519411 4519451 chr3L 4519493 4519555 28 98 12.0 12.5 12.2 2.1 144 chr3L 4519411 intron Tie - chr3L 4519483 intron Tie - chr3L 4519555 intron Tie - chr3L_28_4515001 chr3L_4515001 RAL-304_100b 2072 chr3L 4529210 4529223 chr3L 4529317 4529330 12 106 21.0 19.0 20.0 0.6 120 chr3L 4529210 intron Tie - chr3L 4529270 intron Tie - chr3L 4529330 intron Tie - chr3L_12_4525001 chr3L_4525001 RAL-304_100b 2073 chr3L 4541861 4541914 chr3L 4541962 4542015 30 100 12.0 13.0 12.5 2.2 154 chr3L 4541861 intergenic CG11357 + chr3L 4541938 intergenic CG11357 + chr3L 4542015 intergenic CG11357 + chr3L_30_4540001 chr3L_4540001 RAL-304_100b 2074 chr3L 4607746 4607799 chr3L 4607850 4607863 38 97 19.0 17.0 18.0 2.0 117 chr3L 4607746 intron Src64B - chr3L 4607804 intron Src64B - chr3L 4607863 intron Src64B - chr3L_38_4605001 chr3L_4605001 RAL-304_100b 2075 chr3L 4676012 4676015 chr3L 4676118 4676121 4 106 21.0 2.5 11.8 0.3 109 chr3L 4676012 intron axo - chr3L 4676066 intron axo - chr3L 4676121 intron axo - chr3L_4_4675001 chr3L_4675001 RAL-304_100b 2076 chr3L 4676016 4676051 chr3L 4676117 4676136 10 103 9.0 2.5 5.8 1.5 120 chr3L 4676016 intron axo - chr3L 4676076 intron axo - chr3L 4676136 intron axo - chr3L_10_4675001 chr3L_4675001 RAL-304_100b 2077 chr3L 4699269 4699316 chr3L 4699374 4699421 19 103 3.5 9.5 6.5 2.5 152 chr3L 4699269 intron RhoGEF64C + chr3L 4699345 intron RhoGEF64C + chr3L 4699421 intron RhoGEF64C + chr3L_19_4695001 chr3L_4695001 RAL-304_100b 2078 chr3L 4700783 4700794 chr3L 4700903 4700906 4 115 18.0 0.5 9.2 0.4 123 chr3L 4700783 intron RhoGEF64C + chr3L 4700844 intron RhoGEF64C + chr3L 4700906 intron RhoGEF64C + chr3L_4_4700001 chr3L_4700001 RAL-304_100b 2079 chr3L 4706061 4706105 chr3L 4706576 4706610 21 508 7.5 2.0 4.8 3.6 549 chr3L 4706061 intron RhoGEF64C + chr3L 4706336 intron RhoGEF64C + chr3L 4706610 intron RhoGEF64C + chr3L_21_4705001 chr3L_4705001 RAL-304_100b 2080 chr3L 4713288 4713311 chr3L 4713389 4713394 8 99 23.0 0.0 11.5 0.6 106 chr3L 4713288 intron RhoGEF64C + chr3L 4713341 intron RhoGEF64C + chr3L 4713394 intron RhoGEF64C + chr3L_8_4710001 chr3L_4710001 RAL-304_100b 2081 chr3L 4725302 4725354 chr3L 4725415 4725450 27 111 12.5 11.5 12.0 2.1 148 chr3L 4725302 intron RhoGEF64C + chr3L 4725376 intron RhoGEF64C + chr3L 4725450 intron RhoGEF64C + chr3L_27_4725001 chr3L_4725001 RAL-304_100b 2082 chr3L 4758920 4758960 chr3L 4759195 4759235 20 275 10.0 13.5 11.8 1.6 315 chr3L 4758920 intron RhoGEF64C + chr3L 4759078 intron RhoGEF64C + chr3L 4759235 intron RhoGEF64C + chr3L_20_4755001 chr3L_4755001 RAL-304_100b 2083 chr3L 4775818 4775831 chr3L 4775931 4775944 16 112 35.5 13.0 24.2 0.6 126 chr3L 4775818 intron RhoGEF64C + chr3L 4775881 intron RhoGEF64C + chr3L 4775944 intron RhoGEF64C + chr3L_16_4775001 chr3L_4775001 RAL-304_100b 2084 chr3L 4775832 4775878 chr3L 4775930 4775956 28 110 13.0 12.5 12.8 2.0 124 chr3L 4775832 intron RhoGEF64C + chr3L 4775894 intron RhoGEF64C + chr3L 4775956 intron RhoGEF64C + chr3L_28_4775001 chr3L_4775001 RAL-304_100b 2085 chr3L 4824824 4824831 chr3L 4824937 4824944 5 113 27.0 0.0 13.5 0.3 120 chr3L 4824824 intron Dhc64C - chr3L 4824884 intron Dhc64C - chr3L 4824944 intron Dhc64C - chr3L_5_4820001 chr3L_4820001 RAL-304_100b 2086 chr3L 4839475 4839525 chr3L 4839577 4839628 15 98 2.0 16.5 9.2 1.5 153 chr3L 4839475 intron CG13707 - chr3L 4839552 intron CG13707 - chr3L 4839628 intron CG13707 - chr3L_15_4835001 chr3L_4835001 RAL-304_100b 2087 chr3L 4858290 4858293 chr3L 4858399 4858408 5 114 50.0 30.5 40.2 0.1 118 chr3L 4858290 intergenic not near genes chr3L 4858349 intergenic not near genes chr3L 4858408 intergenic not near genes chr3L_5_4855001 chr3L_4855001 RAL-304_100b 2088 chr3L 4858294 4858319 chr3L 4858393 4858397 36 107 34.0 25.5 29.8 1.2 103 chr3L 4858294 intergenic not near genes chr3L 4858346 intergenic not near genes chr3L 4858397 intergenic not near genes chr3L_36_4855001 chr3L_4855001 RAL-304_100b 2089 chr3L 4858321 4858337 chr3L 4858392 4858452 36 103 24.5 24.5 24.5 1.4 131 chr3L 4858321 intergenic not near genes chr3L 4858386 intergenic not near genes chr3L 4858452 intergenic not near genes chr3L_36_4855001 chr3L_4855001 RAL-304_100b 2090 chr3L 4901108 4901160 chr3L 4907323 4907375 diver 23 6214 16.0 16.0 16.0 1.4 6267 chr3L 4901108 intergenic CG13704 + chr3L 4904242 intergenic not near genes chr3L 4907375 intergenic not near genes chr3L_23_4900001 chr3L_4900001 RAL-304_100b 2091 chr3L 4907959 4907980 chr3L 4908058 4908064 8 95 17.0 15.5 16.2 0.5 105 chr3L 4907959 intergenic not near genes chr3L 4908012 intergenic not near genes chr3L 4908064 intergenic not near genes chr3L_8_4905001 chr3L_4905001 RAL-304_100b 2092 chr3L 4969305 4969357 chr3L 4969454 4969507 26 145 12.0 8.0 10.0 2.4 202 chr3L 4969305 intron Con - chr3L 4969406 intron Con - chr3L 4969507 intron Con - chr3L_26_4965001 chr3L_4965001 RAL-304_100b 2093 chr3L 5034139 5034186 chr3L 5043309 5043363 roo 35 9172 17.5 9.5 13.5 2.4 9224 chr3L 5034139 intron Con - chr3L 5038751 intron Con - chr3L 5043363 intron Con - chr3L_35_5035001 chr3L_5035001 RAL-304_100b 2094 chr3L 5045435 5045445 chr3L 5050241 5050251 Doc 8 4806 28.5 18.5 23.5 0.3 4816 chr3L 5045435 intron Con - chr3L 5047843 intron Con - chr3L 5050251 intron Con - chr3L_8_5045001 chr3L_5045001 RAL-304_100b 2095 chr3L 5045446 5045486 chr3L 5050237 5050277 Doc 25 4803 9.5 16.0 12.8 1.8 4831 chr3L 5045446 intron Con - chr3L 5047862 intron Con - chr3L 5050277 intron Con - chr3L_25_5045001 chr3L_5045001 RAL-304_100b 2096 chr3L 5104459 5104468 chr3L 5124618 5124627 5 20159 26.0 21.0 23.5 0.2 20168 chr3L 5104459 intergenic not near genes chr3L 5114543 intergenic not near genes chr3L 5124627 intergenic not near genes chr3L_5_5110001 chr3L_5110001 RAL-304_100b 2097 chr3L 5104469 5104511 chr3L 5124616 5124670 25 20157 10.5 20.0 15.2 1.5 20201 chr3L 5104469 intergenic not near genes chr3L 5114570 intergenic not near genes chr3L 5124670 intergenic not near genes chr3L_25_5110001 chr3L_5110001 RAL-304_100b 2098 chr3L 5251849 5251855 chr3L 5251953 5251957 5 104 7.0 17.0 12.0 0.4 108 chr3L 5251849 intron shep - chr3L 5251903 intron shep - chr3L 5251957 intron shep - chr3L_5_5250001 chr3L_5250001 RAL-304_100b 2099 chr3L 5251856 5251871 chr3L 5251952 5251975 14 103 1.5 16.5 9.0 1.4 119 chr3L 5251856 intron shep - chr3L 5251916 intron shep - chr3L 5251975 intron shep - chr3L_14_5250001 chr3L_5250001 RAL-304_100b 2100 chr3L 5256672 5256724 chr3L 5256784 5256836 50 109 14.0 4.0 9.0 5.0 164 chr3L 5256672 intron shep - chr3L 5256754 intron shep - chr3L 5256836 intron shep - chr3L_50_5255001 chr3L_5255001 RAL-304_100b 2101 chr3L 5261145 5261182 chr3L 5261249 5261286 21 104 14.5 12.5 13.5 1.4 141 chr3L 5261145 intron shep - chr3L 5261216 intron shep - chr3L 5261286 intron shep - chr3L_21_5260001 chr3L_5260001 RAL-304_100b 2102 chr3L 5280112 5280155 chr3L 5280276 5280297 8 163 0.0 13.0 6.5 1.1 185 chr3L 5280112 intergenic not near genes chr3L 5280204 intergenic not near genes chr3L 5280297 intergenic not near genes chr3L_8_5280001 chr3L_5280001 RAL-304_100b 2103 chr3L 5297547 5297603 chr3L 5297688 5297744 36 136 9.5 12.5 11.0 3.0 197 chr3L 5297547 intergenic not near genes chr3L 5297646 intergenic not near genes chr3L 5297744 intergenic not near genes chr3L_36_5295001 chr3L_5295001 RAL-304_100b 2104 chr3L 5339800 5339851 chr3L 5340069 5340120 38 266 11.0 8.5 9.8 3.5 320 chr3L 5339800 intergenic not near genes chr3L 5339960 intergenic not near genes chr3L 5340120 intergenic not near genes chr3L_38_5335001 chr3L_5335001 RAL-304_100b 2105 chr3L 5361928 5361988 chr3L 5362065 5362125 52 129 15.5 15.5 15.5 3.2 197 chr3L 5361928 exon CG4769 + chr3L 5362026 intron CG4769 + chr3L 5362125 exon CG4769 + chr3L_52_5360001 chr3L_5360001 RAL-304_100b 2106 chr3L 5376018 5376030 chr3L 5376122 5376134 9 104 7.5 14.5 11.0 0.8 116 chr3L 5376018 intergenic not near genes chr3L 5376076 intergenic not near genes chr3L 5376134 intergenic not near genes chr3L_9_5375001 chr3L_5375001 RAL-304_100b 2107 chr3L 5376034 5376039 chr3L 5376121 5376143 7 99 6.0 14.5 10.2 0.6 109 chr3L 5376034 intergenic not near genes chr3L 5376088 intergenic not near genes chr3L 5376143 intergenic not near genes chr3L_7_5375001 chr3L_5375001 RAL-304_100b 2108 chr3L 5396443 5396498 chr3L 5396554 5396610 9 111 0.0 0.5 0.2 7.5 167 chr3L 5396443 intergenic not near genes chr3L 5396526 intergenic not near genes chr3L 5396610 intergenic not near genes chr3L_9_5395001 chr3L_5395001 RAL-304_100b 2109 chr3L 5399574 5399576 chr3L 5399686 5399687 4 112 1.5 0.0 0.8 2.2 113 chr3L 5399574 intergenic not near genes chr3L 5399630 intergenic not near genes chr3L 5399687 intergenic not near genes chr3L_4_5395001 chr3L_5395001 RAL-304_100b 2110 chr3L 5389083 5389100 chr3L 5447219 5447219 4 58126 44.0 45.5 44.8 0.1 58136 chr3L 5389083 intergenic not near genes chr3L 5418151 intergenic not near genes chr3L 5447219 intergenic not near genes chr3L_4_5415001 chr3L_5415001 RAL-304_100b 2111 chr3L 5449509 5449563 chr3L 5449613 5449647 35 102 7.0 14.0 10.5 3.0 138 chr3L 5449509 intergenic not near genes chr3L 5449578 intergenic not near genes chr3L 5449647 intergenic not near genes chr3L_35_5445001 chr3L_5445001 RAL-304_100b 2112 chr3L 5482936 5482945 chr3L 5483157 5483179 6 230 32.5 80.0 56.2 0.1 243 chr3L 5482936 exon CG4835 + chr3L 5483058 exon CG4835 + chr3L 5483179 exon CG4835 + chr3L_6_5480001 chr3L_5480001 RAL-304_100b 2113 chr3L 5482946 5482979 chr3L 5483149 5483185 8 214 9.5 76.0 42.8 0.2 239 chr3L 5482946 exon CG4835 + chr3L 5483066 exon CG4835 + chr3L 5483185 exon CG4835 + chr3L_8_5480001 chr3L_5480001 RAL-304_100b 2114 chr3L 5483066 5483080 chr3L 5483173 5483185 5 105 41.5 96.5 69.0 0.1 119 chr3L 5483066 exon CG4835 + chr3L 5483126 exon CG4835 + chr3L 5483185 exon CG4835 + chr3L_5_5480001 chr3L_5480001 RAL-304_100b 2115 chr3L 5490974 5490977 chr3L 5491044 5491076 5 90 3.0 16.0 9.5 0.5 102 chr3L 5490974 intergenic not near genes chr3L 5491025 intergenic not near genes chr3L 5491076 intergenic not near genes chr3L_5_5490001 chr3L_5490001 RAL-304_100b 2116 chr3L 5493170 5493222 chr3L 5493341 5493388 40 168 8.0 10.5 9.2 3.9 218 chr3L 5493170 intergenic CR44520 - chr3L 5493279 intergenic CR44520 - chr3L 5493388 intergenic CR44520 - chr3L_40_5490001 chr3L_5490001 RAL-304_100b 2117 chr3L 5498368 5498382 chr3L 5498482 5498496 4 114 9.0 14.0 11.5 0.3 128 chr3L 5498368 exon blanks - chr3L 5498432 exon blanks - chr3L 5498496 exon blanks - chr3L_4_5495001 chr3L_5495001 RAL-304_100b 2118 chr3L 5498383 5498428 chr3L 5498480 5498530 12 94 1.5 13.0 7.2 1.5 147 chr3L 5498383 exon blanks - chr3L 5498456 exon blanks - chr3L 5498530 exon blanks - chr3L_12_5495001 chr3L_5495001 RAL-304_100b 2119 chr3L 5516382 5516442 chr3L 5516502 5516562 40 117 12.0 12.0 12.0 3.1 180 chr3L 5516382 intron Lkr - chr3L 5516472 intron Lkr - chr3L 5516562 intron Lkr - chr3L_40_5515001 chr3L_5515001 RAL-304_100b 2120 chr3L 5521988 5522037 chr3L 5522272 5522328 38 291 10.5 8.5 9.5 3.6 340 chr3L 5521988 intron Lkr - chr3L 5522158 intron Lkr - chr3L 5522328 intron Lkr - chr3L_38_5520001 chr3L_5520001 RAL-304_100b 2121 chr3L 5526941 5527205 chr3L 5527052 5527335 49 127 1.5 0.0 0.8 27.2 394 chr3L 5526941 intron Lkr - chr3L 5527138 intron Lkr - chr3L 5527335 intron Lkr - chr3L_49_5525001 chr3L_5525001 RAL-304_100b 2122 chr3L 5537704 5537751 chr3L 5538061 5538118 jockey 24 360 12.0 7.0 9.5 2.3 414 chr3L 5537704 intergenic not near genes chr3L 5537911 intergenic CG10625 - chr3L 5538118 intergenic CG10625 - chr3L_24_5535001 chr3L_5535001 RAL-304_100b 2123 chr3L 5572119 5572153 chr3L 5572252 5572288 26 127 11.0 35.0 23.0 1.1 169 chr3L 5572119 intron Msr-110 - chr3L 5572204 intron Msr-110 - chr3L 5572288 intron Msr-110 - chr3L_26_5570001 chr3L_5570001 RAL-304_100b 2124 chr3L 5572155 5572157 chr3L 5572248 5572287 6 118 10.0 32.5 21.2 0.3 132 chr3L 5572155 intron Msr-110 - chr3L 5572221 intron Msr-110 - chr3L 5572287 intron Msr-110 - chr3L_6_5570001 chr3L_5570001 RAL-304_100b 2125 chr3L 5597813 5597823 chr3L 5597918 5597926 5 105 8.5 1.5 5.0 0.8 113 chr3L 5597813 intergenic CG5150 + chr3L 5597870 intergenic CG5150 + chr3L 5597926 intergenic not near genes chr3L_5_5595001 chr3L_5595001 RAL-304_100b 2126 chr3L 5613361 5613502 chr3L 5613496 5613654 16 145 0.0 0.0 0.0 16.0 293 chr3L 5613361 intergenic not near genes chr3L 5613508 intergenic not near genes chr3L 5613654 intergenic not near genes chr3L_16_5610001 chr3L_5610001 RAL-304_100b 2127 chr3L 5666286 5666319 chr3L 5666394 5666428 6 107 0.5 21.5 11.0 0.5 142 chr3L 5666286 intron sif + chr3L 5666357 intron sif + chr3L 5666428 intron sif + chr3L_6_5665001 chr3L_5665001 RAL-304_100b 2128 chr3L 5667603 5667654 chr3L 5667708 5667759 22 97 10.0 6.5 8.2 2.4 156 chr3L 5667603 intron sif + chr3L 5667681 intron sif + chr3L 5667759 intron sif + chr3L_22_5665001 chr3L_5665001 RAL-304_100b 2129 chr3L 5788682 5788687 chr3L 5788788 5788793 4 106 32.5 9.0 20.8 0.2 111 chr3L 5788682 intergenic not near genes chr3L 5788738 intergenic not near genes chr3L 5788793 intergenic not near genes chr3L_4_5785001 chr3L_5785001 RAL-304_100b 2130 chr3L 5788693 5788739 chr3L 5788784 5788843 30 96 9.5 8.5 9.0 3.0 150 chr3L 5788693 intergenic not near genes chr3L 5788768 intergenic not near genes chr3L 5788843 intergenic not near genes chr3L_30_5785001 chr3L_5785001 RAL-304_100b 2131 chr3L 5834577 5834621 chr3L 5835116 5835158 20 535 26.0 14.5 20.2 0.9 581 chr3L 5834577 intron vn - chr3L 5834868 intron vn - chr3L 5835158 intron vn - chr3L_20_5830001 chr3L_5830001 RAL-304_100b 2132 chr3L 5910007 5910064 chr3L 5910273 5910304 pogo 52 264 7.5 20.5 14.0 3.5 297 chr3L 5910007 intron CG13288 + chr3L 5910156 intron CG13288 + chr3L 5910304 intron CG13288 + chr3L_52_5910001 chr3L_5910001 RAL-304_100b 2133 chr3L 5926294 5926346 chr3L 5926509 5926544 BS 42 211 13.5 24.0 18.8 2.1 250 chr3L 5926294 intron Vap-33B + chr3L 5926419 intron Vap-33B + chr3L 5926544 intron Vap-33B + chr3L_42_5925001 chr3L_5925001 RAL-304_100b 2134 chr3L 6001655 6001707 chr3L 6004377 6004432 jockey 24 2723 15.0 8.5 11.8 1.9 2777 chr3L 6001655 intron PVRAP + chr3L 6003044 intron PVRAP + chr3L 6004432 intron PVRAP + chr3L_24_6000001 chr3L_6000001 RAL-304_100b 2135 chr3L 6040341 6040394 chr3L 6042722 6042775 Doc 26 2380 13.5 12.0 12.8 1.9 2434 chr3L 6040341 intergenic Jon65Aiv + chr3L 6041558 intergenic not near genes chr3L 6042775 intergenic not near genes chr3L_26_6040001 chr3L_6040001 RAL-304_100b 2136 chr3L 6052127 6052145 chr3L 6052226 6052253 9 109 1.0 15.5 8.2 1.0 126 chr3L 6052127 intergenic Jon65Aii +,Jon65Aiii + chr3L 6052190 intergenic Jon65Aii +,Jon65Aiii + chr3L 6052253 intergenic Jon65Aii + chr3L_9_6050001 chr3L_6050001 RAL-304_100b 2137 chr3L 6052638 6052664 chr3L 6052738 6052759 42 102 36.5 44.5 40.5 1.0 121 chr3L 6052638 exon Jon65Aii + chr3L 6052698 intron Jon65Aii + chr3L 6052759 exon Jon65Aii + chr3L_42_6050001 chr3L_6050001 RAL-304_100b 2138 chr3L 6063914 6063965 chr3L 6064023 6064069 40 104 13.5 13.5 13.5 2.8 155 chr3L 6063914 intergenic not near genes chr3L 6063992 intergenic not near genes chr3L 6064069 intergenic not near genes chr3L_40_6060001 chr3L_6060001 RAL-304_100b 2139 chr3L 6102929 6102965 chr3L 6103037 6103073 28 107 12.0 0.0 6.0 4.0 144 chr3L 6102929 intron Ets65A + chr3L 6103001 intron Ets65A + chr3L 6103073 intron Ets65A + chr3L_28_6100001 chr3L_6100001 RAL-304_100b 2140 chr3L 6116670 6116726 chr3L 6116779 6116834 42 105 9.0 11.5 10.2 3.8 164 chr3L 6116670 intron Ets65A + chr3L 6116752 intron Ets65A + chr3L 6116834 intron Ets65A + chr3L_42_6115001 chr3L_6115001 RAL-304_100b 2141 chr3L 6119116 6119163 chr3L 6119218 6119235 22 99 18.0 0.0 9.0 2.2 119 chr3L 6119116 exon Ets65A + chr3L 6119176 intron Ets65A + chr3L 6119235 intron Ets65A + chr3L_22_6115001 chr3L_6115001 RAL-304_100b 2142 chr3L 6124319 6124374 chr3L 6124499 6124506 8 137 3.0 31.5 17.2 0.4 187 chr3L 6124319 exon l(3)mbn - chr3L 6124412 exon l(3)mbn - chr3L 6124506 exon l(3)mbn - chr3L_8_6120001 chr3L_6120001 RAL-304_100b 2143 chr3L 6155670 6155713 chr3L 6155781 6155824 20 111 9.0 9.0 9.0 2.0 154 chr3L 6155670 intergenic CR45421 - chr3L 6155747 intergenic not near genes chr3L 6155824 intergenic not near genes chr3L_20_6155001 chr3L_6155001 RAL-304_100b 2144 chr3L 6159844 6159858 chr3L 6159959 6159968 5 114 42.0 10.0 26.0 0.2 124 chr3L 6159844 intergenic not near genes chr3L 6159906 intergenic not near genes chr3L 6159968 intergenic not near genes chr3L_5_6155001 chr3L_6155001 RAL-304_100b 2145 chr3L 6159860 6159895 chr3L 6159957 6160010 41 110 17.0 9.0 13.0 2.9 150 chr3L 6159860 intergenic not near genes chr3L 6159935 intergenic not near genes chr3L 6160010 intergenic not near genes chr3L_41_6155001 chr3L_6155001 RAL-304_100b 2146 chr3L 6220898 6220930 chr3L 6230075 6230107 roo 35 9176 24.0 19.5 21.8 1.5 9209 chr3L 6220898 5` UTR pncr008:3L + chr3L 6225502 intergenic not near genes chr3L 6230107 intergenic not near genes chr3L_35_6225001 chr3L_6225001 RAL-304_100b 2147 chr3L 6220932 6220948 chr3L 6230068 6230111 roo 18 9170 16.0 16.0 16.0 1.1 9179 chr3L 6220932 5` UTR pncr008:3L + chr3L 6225522 intergenic not near genes chr3L 6230111 intergenic not near genes chr3L_18_6225001 chr3L_6225001 RAL-304_100b 2148 chr3L 6231159 6231172 chr3L 6231248 6231273 7 102 0.0 4.5 2.2 2.2 114 chr3L 6231159 intergenic not near genes chr3L 6231216 intergenic not near genes chr3L 6231273 intergenic not near genes chr3L_7_6230001 chr3L_6230001 RAL-304_100b 2149 chr3L 6231326 6231371 chr3L 6231437 6231482 14 111 5.0 7.5 6.2 1.9 156 chr3L 6231326 intergenic CG13299 - chr3L 6231404 intergenic CG13299 - chr3L 6231482 intergenic CG13299 - chr3L_14_6230001 chr3L_6230001 RAL-304_100b 2150 chr3L 6284940 6284981 chr3L 6285053 6285100 26 117 11.0 17.5 14.2 1.7 160 chr3L 6284940 intergenic not near genes chr3L 6285020 intergenic not near genes chr3L 6285100 intergenic not near genes chr3L_26_6285001 chr3L_6285001 RAL-304_100b 2151 chr3L 6334983 6335043 chr3L 6335479 6335529 297 42 491 9.0 11.5 10.2 3.8 546 chr3L 6334983 intron CG13300 - chr3L 6335256 intron CG13300 - chr3L 6335529 intron CG13300 - chr3L_42_6335001 chr3L_6335001 RAL-304_100b 2152 chr3L 6372111 6372153 chr3L 6372217 6372222 17 102 35.0 0.0 17.5 0.9 111 chr3L 6372111 intergenic not near genes chr3L 6372166 intergenic not near genes chr3L 6372222 intergenic not near genes chr3L_17_6370001 chr3L_6370001 RAL-304_100b 2153 chr3L 6405640 6405691 chr3L 6432129 6432175 roo 33 26486 13.0 14.0 13.5 2.3 26535 chr3L 6405640 intron CG42747 + chr3L 6418908 intron CG42747 + chr3L 6432175 intron CG42747 + chr3L_33_6415001 chr3L_6415001 RAL-304_100b 2154 chr3L 6512238 6512290 chr3L 6512349 6512376 25 100 6.5 6.5 6.5 3.3 138 chr3L 6512238 intron sfl + chr3L 6512307 intron sfl + chr3L 6512376 intron sfl + chr3L_25_6510001 chr3L_6510001 RAL-304_100b 2155 chr3L 6620587 6620605 chr3L 6621052 6621070 Rt1c 18 464 17.0 35.5 26.2 0.7 483 chr3L 6620587 intergenic not near genes chr3L 6620828 intergenic not near genes chr3L 6621070 intergenic not near genes chr3L_18_6620001 chr3L_6620001 RAL-304_100b 2156 chr3L 6623453 6623507 chr3L 6623574 6623628 50 115 11.5 12.0 11.8 3.9 175 chr3L 6623453 intergenic not near genes chr3L 6623540 intergenic GluRIA + chr3L 6623628 intergenic GluRIA + chr3L_50_6620001 chr3L_6620001 RAL-304_100b 2157 chr3L 6642863 6642879 chr3L 6642952 6642954 13 100 0.5 0.0 0.2 10.8 91 chr3L 6642863 intergenic CR45239 + chr3L 6642908 intergenic CR45239 + chr3L 6642954 intergenic CR45239 + chr3L_13_6640001 chr3L_6640001 RAL-304_100b 2158 chr3L 6652053 6652110 chr3L 6652156 6652197 58 97 10.0 10.0 10.0 5.3 144 chr3L 6652053 intergenic not near genes chr3L 6652125 intergenic not near genes chr3L 6652197 intergenic not near genes chr3L_58_6650001 chr3L_6650001 RAL-304_100b 2159 chr3L 6774992 6775019 chr3L 6775116 6775133 21 119 24.5 15.0 19.8 1.0 141 chr3L 6774992 intergenic not near genes chr3L 6775062 intergenic not near genes chr3L 6775133 intergenic not near genes chr3L_21_6775001 chr3L_6775001 RAL-304_100b 2160 chr3L 6781099 6781153 chr3L 6783137 6783188 Doc 20 2035 9.0 0.0 4.5 3.6 2089 chr3L 6781099 intergenic not near genes chr3L 6782144 intergenic not near genes chr3L 6783188 intergenic not near genes chr3L_20_6780001 chr3L_6780001 RAL-304_100b 2161 chr3L 6808877 6808880 chr3L 6809367 6809370 5 490 32.0 21.0 26.5 0.2 493 chr3L 6808877 intergenic not near genes chr3L 6809124 intergenic not near genes chr3L 6809370 intergenic not near genes chr3L_5_6805001 chr3L_6805001 RAL-304_100b 2162 chr3L 6808881 6808923 chr3L 6809366 6809390 53 486 11.0 20.5 15.8 3.2 509 chr3L 6808881 intergenic not near genes chr3L 6809136 intergenic not near genes chr3L 6809390 intergenic not near genes chr3L_53_6805001 chr3L_6805001 RAL-304_100b 2163 chr3L 6835906 6835924 chr3L 6836009 6836027 16 103 8.0 15.5 11.8 1.2 121 chr3L 6835906 intergenic not near genes chr3L 6835966 intergenic not near genes chr3L 6836027 intergenic not near genes chr3L_16_6835001 chr3L_6835001 RAL-304_100b 2164 chr3L 6837558 6837561 chr3L 15843058 15843059 4 9005500 26.5 0.0 13.2 0.3 9005501 chr3L 6837558 intergenic not near genes chr3L 11340308 intergenic not near genes chr3L 15843059 intron CG32150 - chr3L_4_11340001 chr3L_11340001 RAL-304_100b 2165 chr3L 6855912 6855955 chr3L 6860717 6860765 Doc 38 4805 14.5 23.0 18.8 1.9 4853 chr3L 6855912 intergenic not near genes chr3L 6858338 intergenic not near genes chr3L 6860765 intergenic not near genes chr3L_38_6855001 chr3L_6855001 RAL-304_100b 2166 chr3L 6875213 6875251 chr3L 6875315 6875337 25 99 10.0 0.0 5.0 4.2 124 chr3L 6875213 intergenic not near genes chr3L 6875275 intergenic not near genes chr3L 6875337 intergenic not near genes chr3L_25_6875001 chr3L_6875001 RAL-304_100b 2167 chr3L 6887495 6887546 chr3L 6895012 6895023 roo 45 7514 15.0 12.5 13.8 3.0 7528 chr3L 6887495 intergenic not near genes chr3L 6891259 intergenic not near genes chr3L 6895023 intergenic not near genes chr3L_45_6890001 chr3L_6890001 RAL-304_100b 2168 chr3L 6907988 6908047 chr3L 6908098 6908150 28 101 12.0 0.0 6.0 4.0 162 chr3L 6907988 intergenic not near genes chr3L 6908069 intergenic not near genes chr3L 6908150 intergenic not near genes chr3L_28_6905001 chr3L_6905001 RAL-304_100b 2169 chr3L 6974519 6974522 chr3L 6974645 6974647 4 126 8.0 47.0 27.5 0.1 128 chr3L 6974519 intron Galphai - chr3L 6974583 intron Galphai - chr3L 6974647 intron Galphai - chr3L_4_6970001 chr3L_6970001 RAL-304_100b 2170 chr3L 6994895 6994914 chr3L 6995510 6995550 BS 13 631 1.0 14.5 7.8 1.5 655 chr3L 6994895 intergenic bin + chr3L 6995222 intergenic not near genes chr3L 6995550 intergenic not near genes chr3L_13_6995001 chr3L_6995001 RAL-304_100b 2171 chr3L 7086815 7086856 chr3L 7086919 7086961 7 102 11.5 0.0 5.8 1.0 146 chr3L 7086815 intergenic Cpr65Ea - chr3L 7086888 intergenic Cpr65Ea - chr3L 7086961 intergenic Cpr65Ea - chr3L_7_7085001 chr3L_7085001 RAL-304_100b 2172 chr3L 7091519 7091527 chr3L 7091609 7091623 6 95 40.5 21.0 30.8 0.2 104 chr3L 7091519 intergenic not near genes chr3L 7091571 intergenic not near genes chr3L 7091623 intergenic not near genes chr3L_6_7090001 chr3L_7090001 RAL-304_100b 2173 chr3L 7091528 7091559 chr3L 7091604 7091655 27 92 26.5 19.0 22.8 1.1 127 chr3L 7091528 intergenic not near genes chr3L 7091592 intergenic not near genes chr3L 7091655 intergenic not near genes chr3L_27_7090001 chr3L_7090001 RAL-304_100b 2174 chr3L 7150867 7150876 chr3L 7150965 7150977 8 101 14.5 9.0 11.8 0.6 110 chr3L 7150867 intron corn - chr3L 7150922 intron corn - chr3L 7150977 intron corn - chr3L_8_7150001 chr3L_7150001 RAL-304_100b 2175 chr3L 7150878 7150901 chr3L 7150954 7151002 24 96 4.0 5.5 4.8 4.1 124 chr3L 7150878 intron corn - chr3L 7150940 intron corn - chr3L 7151002 intron corn - chr3L_24_7150001 chr3L_7150001 RAL-304_100b 2176 chr3L 7187384 7187420 chr3L 7187481 7187513 18 102 0.0 0.0 0.0 18.0 129 chr3L 7187384 intron Dscam2 - chr3L 7187448 intron Dscam2 - chr3L 7187513 intron Dscam2 - chr3L_18_7185001 chr3L_7185001 RAL-304_100b 2177 chr3L 7216089 7216141 chr3L 7216191 7216244 27 100 21.0 13.5 17.2 1.5 155 chr3L 7216089 intergenic not near genes chr3L 7216166 intergenic not near genes chr3L 7216244 intergenic not near genes chr3L_27_7215001 chr3L_7215001 RAL-304_100b 2178 chr3L 7222942 7223003 chr3L 7223051 7223114 48 105 13.5 11.5 12.5 3.6 172 chr3L 7222942 5` UTR CR45410 + chr3L 7223028 5` UTR CR45410 + chr3L 7223114 5` UTR CR45410 + chr3L_48_7220001 chr3L_7220001 RAL-304_100b 2179 chr3L 7258918 7258933 chr3L 7259083 7259098 10 165 11.5 15.0 13.2 0.7 180 chr3L 7258918 intron CG14830 - chr3L 7259008 intron CG14830 - chr3L 7259098 intron CG14830 - chr3L_10_7255001 chr3L_7255001 RAL-304_100b 2180 chr3L 7264871 7264894 chr3L 7264969 7265002 14 107 0.0 8.0 4.0 2.8 131 chr3L 7264871 intergenic not near genes chr3L 7264936 intergenic not near genes chr3L 7265002 intergenic not near genes chr3L_14_7260001 chr3L_7260001 RAL-304_100b 2181 chr3L 7285424 7285470 chr3L 7285527 7285573 41 100 14.0 7.5 10.8 3.5 149 chr3L 7285424 intron unc-13-4A - chr3L 7285498 intron unc-13-4A - chr3L 7285573 intron unc-13-4A - chr3L_41_7285001 chr3L_7285001 RAL-304_100b 2182 chr3L 7308162 7308206 chr3L 7308263 7308305 15 100 11.0 14.0 12.5 1.1 143 chr3L 7308162 intron unc-13-4A - chr3L 7308234 intron unc-13-4A - chr3L 7308305 intron unc-13-4A - chr3L_15_7305001 chr3L_7305001 RAL-304_100b 2183 chr3L 7318235 7318240 chr3L 7318337 7318342 4 102 15.5 12.5 14.0 0.3 107 chr3L 7318235 intergenic not near genes chr3L 7318288 intergenic not near genes chr3L 7318342 intergenic not near genes chr3L_4_7315001 chr3L_7315001 RAL-304_100b 2184 chr3L 7328918 7328975 chr3L 7329023 7329081 35 104 9.0 3.0 6.0 5.0 163 chr3L 7328918 intergenic CG8602 -,CG42307 +,mus312 + chr3L 7329000 intergenic CG42307 +,mus312 +,CG8602 - chr3L 7329081 intergenic CG42307 +,mus312 +,CG8602 - chr3L_35_7325001 chr3L_7325001 RAL-304_100b 2185 chr3L 7377294 7377345 chr3L 7380424 7380475 297 39 3127 12.5 22.0 17.2 2.1 3181 chr3L 7377294 intron SMSr - chr3L 7378884 intron SMSr - chr3L 7380475 intron SMSr - chr3L_39_7375001 chr3L_7375001 RAL-304_100b 2186 chr3L 7422866 7422918 chr3L 7422977 7423023 6 110 15.5 0.0 7.8 0.7 157 chr3L 7422866 intergenic not near genes chr3L 7422944 intergenic not near genes chr3L 7423023 intergenic not near genes chr3L_6_7420001 chr3L_7420001 RAL-304_100b 2187 chr3L 7436110 7436150 chr3L 7436213 7436252 25 97 14.0 13.0 13.5 1.7 142 chr3L 7436110 intron CG42458 + chr3L 7436181 intron CG42458 + chr3L 7436252 intron CG42458 + chr3L_25_7435001 chr3L_7435001 RAL-304_100b 2188 chr3L 7442929 7442964 chr3L 7443049 7443078 30 112 12.5 17.0 14.8 1.9 149 chr3L 7442929 intron CG42458 + chr3L 7443004 intron CG42458 + chr3L 7443078 intron CG42458 + chr3L_30_7440001 chr3L_7440001 RAL-304_100b 2189 chr3L 7449427 7449453 chr3L 7449521 7449558 19 100 0.0 18.5 9.2 1.9 131 chr3L 7449427 intron CG42458 + chr3L 7449492 intron CG42458 + chr3L 7449558 intron CG42458 + chr3L_19_7445001 chr3L_7445001 RAL-304_100b 2190 chr3L 7450679 7450715 chr3L 7450771 7450783 12 99 10.5 6.5 8.5 1.3 104 chr3L 7450679 intron CG42458 + chr3L 7450731 intron CG42458 + chr3L 7450783 intron CG42458 + chr3L_12_7450001 chr3L_7450001 RAL-304_100b 2191 chr3L 7455297 7455302 chr3L 7455435 7455440 4 138 0.0 38.5 19.2 0.2 143 chr3L 7455297 intergenic not near genes chr3L 7455368 intergenic not near genes chr3L 7455440 intergenic not near genes chr3L_4_7455001 chr3L_7455001 RAL-304_100b 2192 chr3L 7498740 7498746 chr3L 7503542 7503548 F-element 6 4802 30.5 7.0 18.8 0.3 4808 chr3L 7498740 5` UTR CG8539 - chr3L 7501144 intergenic not near genes chr3L 7503548 intergenic not near genes chr3L_6_7500001 chr3L_7500001 RAL-304_100b 2193 chr3L 7498747 7498784 chr3L 7503539 7503586 F-element 24 4799 15.0 6.0 10.5 2.1 4839 chr3L 7498747 5` UTR CG8539 - chr3L 7501166 intergenic not near genes chr3L 7503586 intergenic not near genes chr3L_24_7500001 chr3L_7500001 RAL-304_100b 2194 chr3L 7591121 7591131 chr3L 7591237 7591242 9 115 38.5 18.0 28.2 0.3 121 chr3L 7591121 intergenic CG7716 - chr3L 7591182 intergenic CG7716 - chr3L 7591242 intergenic CG7716 - chr3L_9_7590001 chr3L_7590001 RAL-304_100b 2195 chr3L 7591133 7591182 chr3L 7591236 7591287 44 104 13.0 17.0 15.0 2.8 154 chr3L 7591133 intergenic CG7716 - chr3L 7591210 intergenic CG7716 - chr3L 7591287 intergenic CG7716 - chr3L_44_7590001 chr3L_7590001 RAL-304_100b 2196 chr3L 6506680 6506680 chr3L 7607500 7607519 4 1100828 28.0 31.5 29.8 0.1 1100839 chr3L 6506680 intron sfl + chr3L 7057100 intergenic not near genes chr3L 7607519 intron CG33275 + chr3L_4_7055001 chr3L_7055001 RAL-304_100b 2197 chr3L 7617671 7617698 chr3L 7617805 7617805 15 130 26.0 0.0 13.0 1.1 134 chr3L 7617671 intron CG33275 + chr3L 7617738 intron CG33275 + chr3L 7617805 intron CG33275 + chr3L_15_7615001 chr3L_7615001 RAL-304_100b 2198 chr3L 7727123 7727174 chr3L 7727229 7727280 21 106 2.5 5.0 3.8 4.4 157 chr3L 7727123 intron CG32373 + chr3L 7727202 intron CG32373 + chr3L 7727280 intron CG32373 + chr3L_21_7725001 chr3L_7725001 RAL-304_100b 2199 chr3L 7793691 7793717 chr3L 7800768 7800794 297 18 7076 21.0 16.5 18.8 0.9 7103 chr3L 7793691 intron CG32369 - chr3L 7797242 intron CG32369 - chr3L 7800794 intron CG32369 - chr3L_18_7795001 chr3L_7795001 RAL-304_100b 2200 chr3L 7793719 7793743 chr3L 7800765 7800819 297 15 7072 13.5 14.5 14.0 1.0 7100 chr3L 7793719 intron CG32369 - chr3L 7797269 intron CG32369 - chr3L 7800819 intron CG32369 - chr3L_15_7795001 chr3L_7795001 RAL-304_100b 2201 chr3L 7806124 7806181 chr3L 7806232 7806289 19 107 10.5 0.0 5.2 3.1 165 chr3L 7806124 intron CG32369 - chr3L 7806206 intron CG32369 - chr3L 7806289 intron CG32369 - chr3L_19_7805001 chr3L_7805001 RAL-304_100b 2202 chr3L 7845364 7845400 chr3L 7845472 7845507 12 108 10.5 4.5 7.5 1.4 143 chr3L 7845364 intron Pdp1 - chr3L 7845436 intron Pdp1 - chr3L 7845507 intron Pdp1 - chr3L_12_7845001 chr3L_7845001 RAL-304_100b 2203 chr3L 7867790 7867801 chr3L 7867893 7867904 7 102 21.0 13.5 17.2 0.4 114 chr3L 7867790 intergenic Pdp1 - chr3L 7867847 intergenic Pdp1 - chr3L 7867904 intergenic not near genes chr3L_7_7865001 chr3L_7865001 RAL-304_100b 2204 chr3L 7869636 7869674 chr3L 7869744 7869763 23 102 20.5 20.5 20.5 1.1 127 chr3L 7869636 exon CG32365 + chr3L 7869700 exon CG32365 + chr3L 7869763 exon CG32365 + chr3L_23_7865001 chr3L_7865001 RAL-304_100b 2205 chr3L 7876086 7876126 chr3L 7876184 7876227 15 103 0.0 0.5 0.2 12.5 141 chr3L 7876086 intron CG32365 + chr3L 7876156 intron CG32365 + chr3L 7876227 intron CG32365 + chr3L_15_7875001 chr3L_7875001 RAL-304_100b 2206 chr3L 7885120 7885140 chr3L 7885236 7885241 10 114 28.0 0.0 14.0 0.7 121 chr3L 7885120 intron CG32365 + chr3L 7885180 intron CG32365 + chr3L 7885241 intron CG32365 + chr3L_10_7885001 chr3L_7885001 RAL-304_100b 2207 chr3L 7886517 7886521 chr3L 7889051 7889064 Stalker4 5 2541 3.0 22.5 12.8 0.4 2547 chr3L 7886517 intron CG32365 + chr3L 7887790 intron CG32365 + chr3L 7889064 intron CG32365 + chr3L_5_7885001 chr3L_7885001 RAL-304_100b 2208 chr3L 7886534 7886545 chr3L 7889029 7889088 Stalker4 16 2533 1.5 11.5 6.5 2.1 2554 chr3L 7886534 intron CG32365 + chr3L 7887811 intron CG32365 + chr3L 7889088 intron CG32365 + chr3L_16_7885001 chr3L_7885001 RAL-304_100b 2209 chr3L 7916813 7916860 chr3L 7926009 7926056 roo 10 9196 6.0 9.0 7.5 1.2 9243 chr3L 7916813 3` UTR syd - chr3L 7921434 intron syd - chr3L 7926056 3` UTR syd - chr3L_10_7920001 chr3L_7920001 RAL-304_100b 2210 chr3L 7982941 7982987 chr3L 7983054 7983099 26 104 34.0 14.5 24.2 1.0 158 chr3L 7982941 intron nmo + chr3L 7983020 intron nmo + chr3L 7983099 intron nmo + chr3L_26_7980001 chr3L_7980001 RAL-304_100b 2211 chr3L 7982989 7982991 chr3L 7983053 7983104 4 91 32.0 14.5 23.2 0.2 115 chr3L 7982989 intron nmo + chr3L 7983046 intron nmo + chr3L 7983104 intron nmo + chr3L_4_7980001 chr3L_7980001 RAL-304_100b 2212 chr3L 7985350 7985396 chr3L 7987704 7987750 NOF 25 2353 9.5 10.5 10.0 2.3 2400 chr3L 7985350 intron nmo + chr3L 7986550 intron nmo + chr3L 7987750 intron nmo + chr3L_25_7985001 chr3L_7985001 RAL-304_100b 2213 chr3L 7995934 7995981 chr3L 7996067 7996107 17 130 10.0 0.0 5.0 2.8 173 chr3L 7995934 intron nmo + chr3L 7996020 intron nmo + chr3L 7996107 intron nmo + chr3L_17_7995001 chr3L_7995001 RAL-304_100b 2214 chr3L 8019731 8019735 chr3L 8024157 8024176 NOF 4 4432 1.5 24.0 12.8 0.3 4445 chr3L 8019731 intron nmo + chr3L 8021954 intron nmo + chr3L 8024176 intron nmo + chr3L_4_8020001 chr3L_8020001 RAL-304_100b 2215 chr3L 8041529 8041571 chr3L 8041632 8041674 38 101 20.0 15.0 17.5 2.1 145 chr3L 8041529 intron nmo + chr3L 8041602 intron nmo + chr3L 8041674 intron nmo + chr3L_38_8040001 chr3L_8040001 RAL-304_100b 2216 chr3L 8081254 8081308 chr3L 8081382 8081436 15 128 5.0 4.5 4.8 2.6 182 chr3L 8081254 intron Ect4 + chr3L 8081345 intron Ect4 + chr3L 8081436 intron Ect4 + chr3L_15_8080001 chr3L_8080001 RAL-304_100b 2217 chr3L 8178502 8178511 chr3L 8178604 8178613 6 102 10.0 0.5 5.2 1.0 111 chr3L 8178502 intergenic Nmt -,mthl7 - chr3L 8178558 intergenic mthl7 -,Nmt - chr3L 8178613 intergenic mthl7 -,Nmt - chr3L_6_8175001 chr3L_8175001 RAL-304_100b 2218 chr3L 8219529 8219590 chr3L 8219845 8219900 46 309 10.0 11.0 10.5 4.0 371 chr3L 8219529 intergenic not near genes chr3L 8219714 intergenic not near genes chr3L 8219900 intergenic not near genes chr3L_46_8215001 chr3L_8215001 RAL-304_100b 2219 chr3L 8226690 8226728 chr3L 8226814 8226850 12 121 5.0 0.0 2.5 3.4 160 chr3L 8226690 intergenic not near genes chr3L 8226770 intergenic not near genes chr3L 8226850 intergenic not near genes chr3L_12_8225001 chr3L_8225001 RAL-304_100b 2220 chr3L 8233570 8233589 chr3L 8238855 8238876 Rt1a 15 5283 17.0 39.0 28.0 0.5 5306 chr3L 8233570 intron CG7213 - chr3L 8236223 intron CG7213 - chr3L 8238876 intron,intron CG7213 -,Dscam4 + chr3L_15_8235001 chr3L_8235001 RAL-304_100b 2221 chr3L 8295776 8295825 chr3L 8295947 8295997 53 178 13.5 22.5 18.0 2.8 221 chr3L 8295776 intergenic CG7201 - chr3L 8295886 intergenic not near genes chr3L 8295997 intergenic not near genes chr3L_53_8295001 chr3L_8295001 RAL-304_100b 2222 chr3L 8364497 8364530 chr3L 8364613 8364646 24 116 20.5 4.5 12.5 1.8 149 chr3L 8364497 intergenic not near genes chr3L 8364572 intergenic not near genes chr3L 8364646 intergenic not near genes chr3L_24_8360001 chr3L_8360001 RAL-304_100b 2223 chr3L 8396082 8396141 chr3L 8396185 8396233 66 101 29.0 19.5 24.2 2.6 151 chr3L 8396082 5` UTR CG7120 + chr3L 8396158 5` UTR CG7120 + chr3L 8396233 intron CG7120 + chr3L_66_8395001 chr3L_8395001 RAL-304_100b 2224 chr3L 8443542 8443574 chr3L 8443648 8443681 5 106 13.5 7.0 10.2 0.4 139 chr3L 8443542 3` UTR CG6983 - chr3L 8443612 3` UTR CG6983 - chr3L 8443681 3` UTR CG6983 - chr3L_5_8440001 chr3L_8440001 RAL-304_100b 2225 chr3L 8456450 8456487 chr3L 8456568 8456589 22 113 26.5 26.0 26.2 0.8 139 chr3L 8456450 intron Gug + chr3L 8456520 intron Gug + chr3L 8456589 intron Gug + chr3L_22_8455001 chr3L_8455001 RAL-304_100b 2226 chr3L 8481747 8481795 chr3L 8490931 8490979 roo 25 9169 33.0 14.5 23.8 1.0 9232 chr3L 8481747 intron CG43163 - chr3L 8486363 intron CG43163 - chr3L 8490979 intron CG43163 - chr3L_25_8485001 chr3L_8485001 RAL-304_100b 2227 chr3L 8481796 8481806 chr3L 8490929 8490989 roo 13 9174 23.5 14.0 18.8 0.7 9193 chr3L 8481796 intron CG43163 - chr3L 8486392 intron CG43163 - chr3L 8490989 intron CG43163 - chr3L_13_8485001 chr3L_8485001 RAL-304_100b 2228 chr3L 8498296 8498325 chr3L 8505788 8505817 blood 21 7491 5.5 22.0 13.8 1.4 7521 chr3L 8498296 intron CG43163 - chr3L 8502056 intron CG43163 - chr3L 8505817 intron CG43163 - chr3L_21_8500001 chr3L_8500001 RAL-304_100b 2229 chr3L 8576252 8576278 chr3L 8576371 8576397 14 119 6.0 6.5 6.2 1.9 145 chr3L 8576252 intergenic CG6638 - chr3L 8576324 intergenic CG6638 -,CG43078 + chr3L 8576397 intergenic CG6638 -,CG43078 + chr3L_14_8575001 chr3L_8575001 RAL-304_100b 2230 chr3L 8579827 8579853 chr3L 8579932 8579958 24 100 41.5 19.0 30.2 0.8 131 chr3L 8579827 intron CG43078 + chr3L 8579892 intron CG43078 + chr3L 8579958 intron CG43078 + chr3L_24_8575001 chr3L_8575001 RAL-304_100b 2231 chr3L 8579854 8579883 chr3L 8579929 8579988 50 93 19.5 15.0 17.2 2.7 134 chr3L 8579854 intron CG43078 + chr3L 8579921 intron CG43078 + chr3L 8579988 intron CG43078 + chr3L_50_8575001 chr3L_8575001 RAL-304_100b 2232 chr3L 8615004 8615009 chr3L 8615108 8615113 8 104 41.5 12.5 27.0 0.3 109 chr3L 8615004 exon CG6282 + chr3L 8615058 exon CG6282 + chr3L 8615113 intron CG6282 + chr3L_8_8615001 chr3L_8615001 RAL-304_100b 2233 chr3L 8615010 8615062 chr3L 8615107 8615166 49 101 14.0 12.0 13.0 3.5 156 chr3L 8615010 exon CG6282 + chr3L 8615088 intron CG6282 + chr3L 8615166 intron CG6282 + chr3L_49_8615001 chr3L_8615001 RAL-304_100b 2234 chr3L 8627138 8627145 chr3L 8627252 8627262 11 116 0.0 0.0 0.0 11.0 124 chr3L 8627138 intron Zasp66 + chr3L 8627200 intron Zasp66 + chr3L 8627262 intron Zasp66 + chr3L_11_8625001 chr3L_8625001 RAL-304_100b 2235 chr3L 8642697 8642713 chr3L 8642803 8642818 14 105 28.0 17.0 22.5 0.6 121 chr3L 8642697 intron Cpr66D + chr3L 8642758 intron Cpr66D + chr3L 8642818 intron Cpr66D + chr3L_14_8640001 chr3L_8640001 RAL-304_100b 2236 chr3L 8751655 8751660 chr3L 21083918 21083918 4 12332261 43.5 64.5 54.0 0.1 12332263 chr3L 8751655 3` UTR CR44527 - chr3L 14917786 intron DCX-EMAP + chr3L 21083918 intron ko - chr3L_4_14915001 chr3L_14915001 RAL-304_100b 2237 chr3L 8751684 8751704 chr3L 8751789 8751809 21 104 9.0 46.5 27.8 0.7 125 chr3L 8751684 intergenic CR44527 - chr3L 8751746 intergenic CR44527 - chr3L 8751809 intergenic CR44527 - chr3L_21_8750001 chr3L_8750001 RAL-304_100b 2238 chr3L 8791256 8791265 chr3L 8796701 8796710 I-element 6 5445 38.5 0.5 19.5 0.3 5454 chr3L 8791256 exon Fhos + chr3L 8793983 intron Fhos + chr3L 8796710 intron Fhos + chr3L_6_8790001 chr3L_8790001 RAL-304_100b 2239 chr3L 8791266 8791275 chr3L 8796698 8796710 I-element 5 5440 33.0 0.5 16.8 0.3 5444 chr3L 8791266 exon Fhos + chr3L 8793988 intron Fhos + chr3L 8796710 intron Fhos + chr3L_5_8790001 chr3L_8790001 RAL-304_100b 2240 chr3L 8791283 8791309 chr3L 8796695 8796753 I-element 14 5431 14.5 0.5 7.5 1.6 5470 chr3L 8791283 exon Fhos + chr3L 8794018 intron Fhos + chr3L 8796753 intron Fhos + chr3L_14_8790001 chr3L_8790001 RAL-304_100b 2241 chr3L 8827063 8827129 chr3L 8827305 8827364 17 235 0.0 13.0 6.5 2.3 301 chr3L 8827063 intergenic dally + chr3L 8827214 intergenic dally + chr3L 8827364 intergenic dally + chr3L_17_8825001 chr3L_8825001 RAL-304_100b 2242 chr3L 8827515 8827573 chr3L 8827616 8827644 62 97 15.0 15.0 15.0 3.9 129 chr3L 8827515 5` UTR dally + chr3L 8827580 5` UTR dally + chr3L 8827644 5` UTR dally + chr3L_62_8825001 chr3L_8825001 RAL-304_100b 2243 chr3L 8839726 8839748 chr3L 8839816 8839853 11 104 7.0 10.0 8.5 1.2 127 chr3L 8839726 intron dally + chr3L 8839790 intron dally + chr3L 8839853 intron dally + chr3L_11_8835001 chr3L_8835001 RAL-304_100b 2244 chr3L 8928243 8928296 chr3L 8928344 8928392 14 99 13.5 8.5 11.0 1.2 149 chr3L 8928243 intron Tsp66E + chr3L 8928318 intron Tsp66E + chr3L 8928392 intron Tsp66E + chr3L_14_8925001 chr3L_8925001 RAL-304_100b 2245 chr3L 8959373 8959401 chr3L 8959559 8959587 24 185 11.0 10.5 10.8 2.0 214 chr3L 8959373 intron CG13313 + chr3L 8959480 intron CG13313 + chr3L 8959587 intron CG13313 + chr3L_24_8955001 chr3L_8955001 RAL-304_100b 2246 chr3L 9003920 9003925 chr3L 9004030 9004030 4 109 50.5 9.0 29.8 0.1 110 chr3L 9003920 intergenic not near genes chr3L 9003975 intergenic not near genes chr3L 9004030 intergenic not near genes chr3L_4_9000001 chr3L_9000001 RAL-304_100b 2247 chr3L 9003929 9003976 chr3L 9004029 9004086 43 105 24.5 8.0 16.2 2.5 157 chr3L 9003929 intergenic not near genes chr3L 9004008 intergenic not near genes chr3L 9004086 intergenic not near genes chr3L_43_9000001 chr3L_9000001 RAL-304_100b 2248 chr3L 9009932 9009975 chr3L 9010061 9010104 23 129 5.5 12.0 8.8 2.3 172 chr3L 9009932 intergenic CG5194 - chr3L 9010018 intergenic CG5194 - chr3L 9010104 intergenic CG5194 - chr3L_23_9010001 chr3L_9010001 RAL-304_100b 2249 chr3L 9013689 9013692 chr3L 18417066 18417066 15 9403375 108.0 80.5 94.2 0.2 9403377 chr3L 9013689 intron Doc2 - chr3L 13715378 intron bru-3 - chr3L 18417066 intergenic not near genes chr3L_15_13715001 chr3L_13715001 RAL-304_100b 2250 chr3L 9024477 9024537 chr3L 9024582 9024642 38 102 9.5 10.5 10.0 3.5 165 chr3L 9024477 intergenic not near genes chr3L 9024560 intergenic not near genes chr3L 9024642 intergenic not near genes chr3L_38_9020001 chr3L_9020001 RAL-304_100b 2251 chr3L 9029127 9029183 chr3L 9029237 9029303 62 105 18.0 1.5 9.8 5.7 176 chr3L 9029127 intergenic not near genes chr3L 9029215 intergenic not near genes chr3L 9029303 intergenic not near genes chr3L_62_9025001 chr3L_9025001 RAL-304_100b 2252 chr3L 9030404 9030447 chr3L 9030508 9030546 16 103 12.5 6.0 9.2 1.6 142 chr3L 9030404 intergenic not near genes chr3L 9030475 intergenic not near genes chr3L 9030546 intergenic not near genes chr3L_16_9030001 chr3L_9030001 RAL-304_100b 2253 chr3L 9047066 9047092 chr3L 9047178 9047183 8 109 0.0 1.0 0.5 5.3 117 chr3L 9047066 intergenic CG5144 + chr3L 9047124 intergenic CG5144 + chr3L 9047183 intergenic CG5144 + chr3L_8_9045001 chr3L_9045001 RAL-304_100b 2254 chr3L 9067293 9067350 chr3L 9067397 9067454 31 101 13.5 15.0 14.2 2.0 161 chr3L 9067293 3` UTR CG4911 - chr3L 9067374 3` UTR CG4911 - chr3L 9067454 3` UTR CG4911 - chr3L_31_9065001 chr3L_9065001 RAL-304_100b 2255 chr3L 9076901 9076955 chr3L 9084486 9084540 412 50 7582 13.5 18.0 15.8 3.0 7639 chr3L 9076901 exon Tequila + chr3L 9080720 intron Tequila + chr3L 9084540 exon Tequila + chr3L_50_9080001 chr3L_9080001 RAL-304_100b 2256 chr3L 9086215 9086219 chr3L 9086323 9086327 5 108 51.0 40.0 45.5 0.1 112 chr3L 9086215 exon Tequila + chr3L 9086271 exon Tequila + chr3L 9086327 exon Tequila + chr3L_5_9085001 chr3L_9085001 RAL-304_100b 2257 chr3L 9130531 9130582 chr3L 9134317 9134368 412 64 3780 26.5 22.5 24.5 2.5 3837 chr3L 9130531 intergenic bol - chr3L 9132450 intergenic not near genes chr3L 9134368 intergenic Dhpr + chr3L_64_9130001 chr3L_9130001 RAL-304_100b 2258 chr3L 9164690 9164729 chr3L 9166162 9166162 hobo 21 1482 15.5 0.5 8.0 2.3 1472 chr3L 9164690 intron Rdl - chr3L 9165426 intron Rdl - chr3L 9166162 intron Rdl - chr3L_21_9165001 chr3L_9165001 RAL-304_100b 2259 chr3L 9219226 9219237 chr3L 9219918 9219934 jockey 14 694 46.5 28.0 37.2 0.4 708 chr3L 9219226 intergenic not near genes chr3L 9219580 intergenic not near genes chr3L 9219934 intergenic not near genes chr3L_14_9215001 chr3L_9215001 RAL-304_100b 2260 chr3L 9219238 9219280 chr3L 9219914 9219915 jockey 48 686 19.5 25.0 22.2 2.1 677 chr3L 9219238 intergenic not near genes chr3L 9219576 intergenic not near genes chr3L 9219915 intergenic not near genes chr3L_48_9215001 chr3L_9215001 RAL-304_100b 2261 chr3L 9237470 9237487 chr3L 9237574 9237591 10 104 23.0 0.5 11.8 0.8 121 chr3L 9237470 intergenic not near genes chr3L 9237530 intergenic not near genes chr3L 9237591 intergenic not near genes chr3L_10_9235001 chr3L_9235001 RAL-304_100b 2262 chr3L 9260520 9260575 chr3L 9260634 9260689 46 107 17.5 14.5 16.0 2.7 169 chr3L 9260520 intron GluRIB + chr3L 9260604 intron GluRIB + chr3L 9260689 intron GluRIB + chr3L_46_9260001 chr3L_9260001 RAL-304_100b 2263 chr3L 9270593 9270651 chr3L 9278373 9278402 roo 54 7771 16.0 16.5 16.2 3.1 7809 chr3L 9270593 intron GluRIB + chr3L 9274498 intron GluRIB + chr3L 9278402 exon GluRIB + chr3L_54_9270001 chr3L_9270001 RAL-304_100b 2264 chr3L 9302450 9302483 chr3L 9302560 9302588 11 104 13.0 0.0 6.5 1.5 138 chr3L 9302450 intergenic not near genes chr3L 9302519 intergenic not near genes chr3L 9302588 intergenic not near genes chr3L_11_9300001 chr3L_9300001 RAL-304_100b 2265 chr3L 9307795 9307795 chr3L 18417066 18417066 5 9109271 52.5 80.5 66.5 0.1 9109271 chr3L 9307795 intergenic not near genes chr3L 13862430 intron CG8745 - chr3L 18417066 intergenic not near genes chr3L_5_13860001 chr3L_13860001 RAL-304_100b 2266 chr3L 9307795 9307795 chr3L 22908066 22908067 9 13600271 52.5 64.0 58.2 0.2 13600272 chr3L 9307795 intergenic not near genes chr3L 16107931 intron Zn72D - chr3L 22908067 intergenic not near genes chr3L_9_16105001 chr3L_16105001 RAL-304_100b 2267 chr3L 9307796 9307796 chr3L 22908066 22908069 29 13600270 52.5 64.0 58.2 0.5 13600273 chr3L 9307796 intergenic not near genes chr3L 16107932 intron Zn72D - chr3L 22908069 intergenic not near genes chr3L_29_16105001 chr3L_16105001 RAL-304_100b 2268 chr3L 9313026 9313027 chr3L 11777678 11777678 9 2464652 32.5 52.5 42.5 0.2 2464652 chr3L 9313026 intergenic not near genes chr3L 10545352 intron A2bp1 + chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_9_10545001 chr3L_10545001 RAL-304_100b 2269 chr3L 9320730 9320759 chr3L 9320803 9320862 7 99 10.0 2.5 6.2 1.0 132 chr3L 9320730 intergenic not near genes chr3L 9320796 intergenic not near genes chr3L 9320862 intergenic not near genes chr3L_7_9320001 chr3L_9320001 RAL-304_100b 2270 chr3L 9344195 9344201 chr3L 9344298 9344304 4 103 0.0 23.5 11.8 0.3 109 chr3L 9344195 intron PGRP-LC + chr3L 9344250 intron PGRP-LC + chr3L 9344304 intron PGRP-LC + chr3L_4_9340001 chr3L_9340001 RAL-304_100b 2271 chr3L 9344202 9344225 chr3L 9344278 9344328 20 98 0.0 16.5 8.2 2.2 126 chr3L 9344202 intron PGRP-LC + chr3L 9344265 intron PGRP-LC + chr3L 9344328 intron PGRP-LC + chr3L_20_9340001 chr3L_9340001 RAL-304_100b 2272 chr3L 9392448 9392451 chr3L 9395293 9395297 Doc 4 2846 19.0 18.0 18.5 0.2 2849 chr3L 9392448 intron CG4080 - chr3L 9393872 intron CG4080 - chr3L 9395297 intron CG4080 - chr3L_4_9390001 chr3L_9390001 RAL-304_100b 2273 chr3L 9396836 9396863 chr3L 9396932 9396935 7 94 26.0 5.0 15.5 0.4 99 chr3L 9396836 intron CG4080 - chr3L 9396886 intron CG4080 - chr3L 9396935 intron CG4080 - chr3L_7_9395001 chr3L_9395001 RAL-304_100b 2274 chr3L 9442514 9442525 chr3L 9442659 9442670 7 144 7.0 19.0 13.0 0.5 156 chr3L 9442514 intergenic Bet3 -,Nf-YA - chr3L 9442592 intergenic Bet3 -,Nf-YA - chr3L 9442670 intergenic Bet3 -,Nf-YA - chr3L_7_9440001 chr3L_9440001 RAL-304_100b 2275 chr3L 9443490 9443503 chr3L 9445306 9445319 S-element 6 1816 11.0 9.0 10.0 0.5 1829 chr3L 9443490 intron CG33926 + chr3L 9444404 intron CG33926 + chr3L 9445319 intron CG33926 + chr3L_6_9440001 chr3L_9440001 RAL-304_100b 2276 chr3L 9443504 9443539 chr3L 9445305 9445355 S-element 21 1815 5.5 9.0 7.2 2.6 1851 chr3L 9443504 intron CG33926 + chr3L 9444430 intron CG33926 + chr3L 9445355 intron CG33926 + chr3L_21_9440001 chr3L_9440001 RAL-304_100b 2277 chr3L 9492377 9492429 chr3L 9492483 9492508 17 97 18.5 1.0 9.8 1.6 131 chr3L 9492377 intergenic CG32037 - chr3L 9492442 intergenic CG32037 - chr3L 9492508 intergenic CG32037 - chr3L_17_9490001 chr3L_9490001 RAL-304_100b 2278 chr3L 9501681 9501728 chr3L 9502192 9502239 roo 33 509 9.0 18.0 13.5 2.3 558 chr3L 9501681 intron path - chr3L 9501960 intron path - chr3L 9502239 intron path - chr3L_33_9500001 chr3L_9500001 RAL-304_100b 2279 chr3L 9510885 9510958 chr3L 9511003 9511062 39 111 0.5 9.5 5.0 6.5 177 chr3L 9510885 intron RpS9 - chr3L 9510974 intron RpS9 - chr3L 9511062 exon RpS9 - chr3L_39_9510001 chr3L_9510001 RAL-304_100b 2280 chr3L 9513741 9513770 chr3L 9513852 9513881 26 109 7.5 5.0 6.2 3.6 140 chr3L 9513741 intergenic CG33702 -,CG33700 - chr3L 9513811 intergenic CG33700 -,CG33702 - chr3L 9513881 intergenic CG33700 -,CG33702 - chr3L_26_9510001 chr3L_9510001 RAL-304_100b 2281 chr3L 9533730 9533762 chr3L 9541315 9541347 412 18 7583 28.5 40.0 34.2 0.5 7617 chr3L 9533730 intergenic not near genes chr3L 9537538 intergenic not near genes chr3L 9541347 intergenic not near genes chr3L_18_9535001 chr3L_9535001 RAL-304_100b 2282 chr3L 9533766 9533786 chr3L 9541311 9541371 412 11 7565 15.0 37.0 26.0 0.4 7605 chr3L 9533766 intergenic not near genes chr3L 9537568 intergenic not near genes chr3L 9541371 intergenic not near genes chr3L_11_9535001 chr3L_9535001 RAL-304_100b 2283 chr3L 7411160 7411166 chr3L 9555382 9555383 roo 5 2144218 45.0 52.5 48.8 0.1 2144223 chr3L 7411160 intergenic not near genes chr3L 8483272 intron CG43163 - chr3L 9555383 intron CG42673 + chr3L_5_8480001 chr3L_8480001 RAL-304_100b 2284 chr3L 9559372 9559378 chr3L 9559512 9559538 5 156 30.5 13.5 22.0 0.2 166 chr3L 9559372 intron CG42673 + chr3L 9559455 intron CG42673 + chr3L 9559538 intron CG42673 + chr3L_5_9555001 chr3L_9555001 RAL-304_100b 2285 chr3L 9559384 9559412 chr3L 9559510 9559547 43 149 13.0 12.0 12.5 3.2 163 chr3L 9559384 intron CG42673 + chr3L 9559466 intron CG42673 + chr3L 9559547 intron CG42673 + chr3L_43_9555001 chr3L_9555001 RAL-304_100b 2286 chr3L 9561328 9561360 chr3L 9561431 9561464 13 101 13.5 7.0 10.2 1.2 136 chr3L 9561328 intron CG42673 + chr3L 9561396 intron CG42673 + chr3L 9561464 intron CG42673 + chr3L_13_9560001 chr3L_9560001 RAL-304_100b 2287 chr3L 9571881 9571934 chr3L 9572250 9572306 jockey 25 371 11.0 13.0 12.0 1.9 425 chr3L 9571881 intron CG42673 + chr3L 9572094 intron CG42673 + chr3L 9572306 intron CG42673 + chr3L_25_9570001 chr3L_9570001 RAL-304_100b 2288 chr3L 9575886 9575892 chr3L 9580989 9580990 jockey 4 5102 51.5 10.5 31.0 0.1 5104 chr3L 9575886 intron CG42673 + chr3L 9578438 intron CG42673 + chr3L 9580990 intron CG42673 + chr3L_4_9575001 chr3L_9575001 RAL-304_100b 2289 chr3L 9575899 9575947 chr3L 9580986 9581050 jockey 25 5100 19.5 8.0 13.8 1.7 5151 chr3L 9575899 intron CG42673 + chr3L 9578474 intron CG42673 + chr3L 9581050 intron CG42673 + chr3L_25_9575001 chr3L_9575001 RAL-304_100b 2290 chr3L 9629720 9629767 chr3L 9629821 9629868 12 100 3.0 11.0 7.0 1.5 148 chr3L 9629720 intron CG8336 + chr3L 9629794 intron CG8336 + chr3L 9629868 intron CG8336 + chr3L_12_9625001 chr3L_9625001 RAL-304_100b 2291 chr3L 9715580 9715581 chr3L 9715675 9715682 4 100 31.5 16.0 23.8 0.2 102 chr3L 9715580 intron vsg + chr3L 9715631 intron vsg + chr3L 9715682 intron vsg + chr3L_4_9715001 chr3L_9715001 RAL-304_100b 2292 chr3L 9715583 9715626 chr3L 9715673 9715728 24 99 15.5 15.5 15.5 1.5 145 chr3L 9715583 intron vsg + chr3L 9715656 intron vsg + chr3L 9715728 intron vsg + chr3L_24_9715001 chr3L_9715001 RAL-304_100b 2293 chr3L 9758688 9758750 chr3L 9758801 9758859 26 107 5.0 4.0 4.5 4.7 171 chr3L 9758688 intron CG42268 - chr3L 9758774 intron CG42268 - chr3L 9758859 intron CG42268 - chr3L_26_9755001 chr3L_9755001 RAL-304_100b 2294 chr3L 9775341 9775398 chr3L 9775725 9775783 47 381 2.0 14.0 8.0 5.2 442 chr3L 9775341 intron CG8177 + chr3L 9775562 intron CG8177 + chr3L 9775783 intron CG8177 + chr3L_47_9775001 chr3L_9775001 RAL-304_100b 2295 chr3L 9824126 9824180 chr3L 9824230 9824261 32 101 7.0 0.0 3.5 7.1 135 chr3L 9824126 intron CG43897 + chr3L 9824194 intron CG43897 + chr3L 9824261 intron CG43897 + chr3L_32_9820001 chr3L_9820001 RAL-304_100b 2296 chr3L 9918854 9918913 chr3L 9918974 9919033 53 116 15.5 14.0 14.8 3.4 179 chr3L 9918854 intron CG34356 + chr3L 9918944 intron CG34356 + chr3L 9919033 intron CG34356 + chr3L_53_9915001 chr3L_9915001 RAL-304_100b 2297 chr3L 9929645 9929700 chr3L 9938450 9938505 roo 39 8803 15.0 9.5 12.2 3.0 8860 chr3L 9929645 intron CG34356 + chr3L 9934075 intron CG34356 + chr3L 9938505 intron CG34356 + chr3L_39_9930001 chr3L_9930001 RAL-304_100b 2298 chr3L 10002919 10002945 chr3L 10003039 10003065 14 118 8.0 0.0 4.0 2.8 146 chr3L 10002919 intron dpr6 + chr3L 10002992 intron dpr6 + chr3L 10003065 intron dpr6 + chr3L_14_10000001 chr3L_10000001 RAL-304_100b 2299 chr3L 10027928 10027982 chr3L 10028048 10028074 47 109 11.5 10.5 11.0 3.9 146 chr3L 10027928 intron dpr6 + chr3L 10028001 intron dpr6 + chr3L 10028074 intron dpr6 + chr3L_47_10025001 chr3L_10025001 RAL-304_100b 2300 chr3L 10032552 10032558 chr3L 10032664 10032667 4 111 0.0 26.0 13.0 0.3 115 chr3L 10032552 intron dpr6 + chr3L 10032610 intron dpr6 + chr3L 10032667 intron dpr6 + chr3L_4_10030001 chr3L_10030001 RAL-304_100b 2301 chr3L 10035189 10035247 chr3L 10035301 10035359 65 108 14.5 17.0 15.8 3.9 170 chr3L 10035189 intron dpr6 + chr3L 10035274 intron dpr6 + chr3L 10035359 intron dpr6 + chr3L_65_10035001 chr3L_10035001 RAL-304_100b 2302 chr3L 10099143 10099186 chr3L 10099271 10099324 48 135 9.0 7.0 8.0 5.3 181 chr3L 10099143 intron dpr6 + chr3L 10099234 intron dpr6 + chr3L 10099324 intron dpr6 + chr3L_48_10095001 chr3L_10095001 RAL-304_100b 2303 chr3L 10165636 10165683 chr3L 10165737 10165743 10 96 9.5 0.5 5.0 1.7 107 chr3L 10165636 intron dpr10 - chr3L 10165690 intron dpr10 - chr3L 10165743 intron dpr10 - chr3L_10_10165001 chr3L_10165001 RAL-304_100b 2304 chr3L 10269736 10269786 chr3L 10269845 10269895 47 104 11.0 11.5 11.2 3.9 159 chr3L 10269736 5` UTR CR45242 + chr3L 10269816 5` UTR CR45242 + chr3L 10269895 5` UTR CR45242 + chr3L_47_10265001 chr3L_10265001 RAL-304_100b 2305 chr3L 10293942 10293954 chr3L 10294044 10294056 11 102 0.0 22.0 11.0 0.9 114 chr3L 10293942 intergenic not near genes chr3L 10293999 intergenic not near genes chr3L 10294056 intergenic not near genes chr3L_11_10290001 chr3L_10290001 RAL-304_100b 2306 chr3L 10298656 10298702 chr3L 10298756 10298814 24 111 1.0 9.0 5.0 4.0 158 chr3L 10298656 intergenic not near genes chr3L 10298735 intergenic not near genes chr3L 10298814 intergenic not near genes chr3L_24_10295001 chr3L_10295001 RAL-304_100b 2307 chr3L 10300028 10300073 chr3L 10300145 10300184 33 115 14.5 5.5 10.0 3.0 156 chr3L 10300028 intergenic not near genes chr3L 10300106 intergenic not near genes chr3L 10300184 intergenic not near genes chr3L_33_10300001 chr3L_10300001 RAL-304_100b 2308 chr3L 10308727 10308772 chr3L 10308829 10308874 38 100 10.5 18.5 14.5 2.5 147 chr3L 10308727 intergenic not near genes chr3L 10308800 intergenic not near genes chr3L 10308874 intergenic not near genes chr3L_38_10305001 chr3L_10305001 RAL-304_100b 2309 chr3L 10328090 10328129 chr3L 10328227 10328254 18 136 9.0 13.0 11.0 1.5 164 chr3L 10328090 intergenic not near genes chr3L 10328172 intergenic not near genes chr3L 10328254 intergenic not near genes chr3L_18_10325001 chr3L_10325001 RAL-304_100b 2310 chr3L 10414920 10414972 chr3L 10417317 10417369 Doc 41 2394 9.0 10.5 9.8 3.8 2449 chr3L 10414920 intergenic CG12362 + chr3L 10416144 intergenic not near genes chr3L 10417369 intergenic not near genes chr3L_41_10415001 chr3L_10415001 RAL-304_100b 2311 chr3L 10417550 10417588 chr3L 10417652 10417684 47 98 22.0 14.0 18.0 2.5 134 chr3L 10417550 intergenic not near genes chr3L 10417617 intergenic not near genes chr3L 10417684 intergenic not near genes chr3L_47_10415001 chr3L_10415001 RAL-304_100b 2312 chr3L 10417591 10417606 chr3L 10417648 10417686 10 86 18.0 13.5 15.8 0.6 95 chr3L 10417591 intergenic not near genes chr3L 10417638 intergenic not near genes chr3L 10417686 intergenic not near genes chr3L_10_10415001 chr3L_10415001 RAL-304_100b 2313 chr3L 10420458 10420508 chr3L 10420615 10420664 8 154 7.0 0.0 3.5 1.8 206 chr3L 10420458 intergenic not near genes chr3L 10420561 intergenic not near genes chr3L 10420664 intergenic not near genes chr3L_8_10420001 chr3L_10420001 RAL-304_100b 2314 chr3L 10450671 10450716 chr3L 10450776 10450821 16 104 0.0 11.5 5.8 2.4 150 chr3L 10450671 intergenic not near genes chr3L 10450746 intergenic not near genes chr3L 10450821 intergenic not near genes chr3L_16_10450001 chr3L_10450001 RAL-304_100b 2315 chr3L 10526636 10526645 chr3L 10526730 10526730 7 100 17.5 32.0 24.8 0.3 94 chr3L 10526636 intron A2bp1 + chr3L 10526683 intron A2bp1 + chr3L 10526730 intron A2bp1 + chr3L_7_10525001 chr3L_10525001 RAL-304_100b 2316 chr3L 10526647 10526653 chr3L 10526718 10526754 7 90 15.5 20.0 17.8 0.4 107 chr3L 10526647 intron A2bp1 + chr3L 10526700 intron A2bp1 + chr3L 10526754 intron A2bp1 + chr3L_7_10525001 chr3L_10525001 RAL-304_100b 2317 chr3L 10551448 10551460 chr3L 10551560 10551572 10 112 0.5 7.5 4.0 2.0 124 chr3L 10551448 intron A2bp1 + chr3L 10551510 intron A2bp1 + chr3L 10551572 intron A2bp1 + chr3L_10_10550001 chr3L_10550001 RAL-304_100b 2318 chr3L 10551462 10551475 chr3L 10551556 10551587 10 110 0.5 7.0 3.8 2.1 125 chr3L 10551462 intron A2bp1 + chr3L 10551524 intron A2bp1 + chr3L 10551587 intron A2bp1 + chr3L_10_10550001 chr3L_10550001 RAL-304_100b 2319 chr3L 10551476 10551492 chr3L 10551548 10551604 6 104 0.5 6.0 3.2 1.4 128 chr3L 10551476 intron A2bp1 + chr3L 10551540 intron A2bp1 + chr3L 10551604 intron A2bp1 + chr3L_6_10550001 chr3L_10550001 RAL-304_100b 2320 chr3L 10600433 10600475 chr3L 10600540 10600582 20 106 14.5 6.0 10.2 1.8 149 chr3L 10600433 intergenic not near genes chr3L 10600508 intergenic not near genes chr3L 10600582 intergenic not near genes chr3L_20_10600001 chr3L_10600001 RAL-304_100b 2321 chr3L 10613156 10613202 chr3L 10613476 10613522 17 319 5.5 14.5 10.0 1.5 366 chr3L 10613156 intergenic not near genes chr3L 10613339 intergenic not near genes chr3L 10613522 intergenic not near genes chr3L_17_10610001 chr3L_10610001 RAL-304_100b 2322 chr3L 10614742 10614793 chr3L 10614854 10614897 7 109 0.0 5.5 2.8 1.8 155 chr3L 10614742 intergenic not near genes chr3L 10614820 intergenic not near genes chr3L 10614897 intergenic not near genes chr3L_7_10610001 chr3L_10610001 RAL-304_100b 2323 chr3L 10620232 10620240 chr3L 10620318 10620341 4 96 7.0 4.5 5.8 0.6 109 chr3L 10620232 intergenic not near genes chr3L 10620286 intergenic not near genes chr3L 10620341 intergenic not near genes chr3L_4_10620001 chr3L_10620001 RAL-304_100b 2324 chr3L 10621831 10621854 chr3L 10621943 10621961 11 111 9.0 10.5 9.8 1.0 130 chr3L 10621831 intergenic not near genes chr3L 10621896 intergenic not near genes chr3L 10621961 intergenic not near genes chr3L_11_10620001 chr3L_10620001 RAL-304_100b 2325 chr3L 10621856 10621877 chr3L 10621941 10621989 12 102 3.0 10.5 6.8 1.5 133 chr3L 10621856 intergenic not near genes chr3L 10621922 intergenic not near genes chr3L 10621989 intergenic not near genes chr3L_12_10620001 chr3L_10620001 RAL-304_100b 2326 chr3L 10658067 10658078 chr3L 10658164 10658180 7 101 5.0 0.0 2.5 2.0 113 chr3L 10658067 intron CG32066 - chr3L 10658124 intron CG32066 - chr3L 10658180 intron CG32066 - chr3L_7_10655001 chr3L_10655001 RAL-304_100b 2327 chr3L 10658080 10658211 chr3L 10658161 10658348 76 135 0.0 0.0 0.0 76.0 268 chr3L 10658080 intron CG32066 - chr3L 10658214 intron CG32066 - chr3L 10658348 intron CG32066 - chr3L_76_10655001 chr3L_10655001 RAL-304_100b 2328 chr3L 10762807 10762823 chr3L 10762916 10762924 11 108 35.5 22.0 28.8 0.4 117 chr3L 10762807 intergenic not near genes chr3L 10762866 intergenic not near genes chr3L 10762924 intergenic not near genes chr3L_11_10760001 chr3L_10760001 RAL-304_100b 2329 chr3L 10762824 10762861 chr3L 10762913 10762970 32 99 14.5 21.0 17.8 1.7 146 chr3L 10762824 intergenic not near genes chr3L 10762897 intergenic not near genes chr3L 10762970 intergenic not near genes chr3L_32_10760001 chr3L_10760001 RAL-304_100b 2330 chr3L 10820422 10820518 chr3L 10820524 10820692 9 196 0.0 0.0 0.0 9.0 270 chr3L 10820422 intergenic not near genes chr3L 10820557 intergenic not near genes chr3L 10820692 intergenic not near genes chr3L_9_10820001 chr3L_10820001 RAL-304_100b 2331 chr3L 10907961 10907967 chr3L 10908062 10908068 5 101 8.5 1.5 5.0 0.8 107 chr3L 10907961 intergenic not near genes chr3L 10908014 intergenic not near genes chr3L 10908068 intergenic not near genes chr3L_5_10905001 chr3L_10905001 RAL-304_100b 2332 chr3L 10942036 10942072 chr3L 10942142 10942180 29 97 37.5 20.0 28.8 1.0 144 chr3L 10942036 intergenic not near genes chr3L 10942108 intergenic not near genes chr3L 10942180 intergenic not near genes chr3L_29_10940001 chr3L_10940001 RAL-304_100b 2333 chr3L 10956365 10956393 chr3L 10956483 10956501 11 115 5.5 11.0 8.2 1.2 136 chr3L 10956365 intergenic not near genes chr3L 10956433 intergenic not near genes chr3L 10956501 intergenic not near genes chr3L_11_10955001 chr3L_10955001 RAL-304_100b 2334 chr3L 11045136 11045197 chr3L 11045250 11045294 46 101 12.0 19.0 15.5 2.8 158 chr3L 11045136 intron CG43693 - chr3L 11045215 intron CG43693 - chr3L 11045294 intron CG43693 - chr3L_46_11045001 chr3L_11045001 RAL-304_100b 2335 chr3L 11053647 11053682 chr3L 11053757 11053786 6 103 0.0 17.5 8.8 0.6 139 chr3L 11053647 intergenic CG7888 + chr3L 11053716 intergenic CG7888 + chr3L 11053786 intergenic CG7888 + chr3L_6_11050001 chr3L_11050001 RAL-304_100b 2336 chr3L 11087033 11087088 chr3L 11088846 11088902 S-element 34 1809 10.5 11.5 11.0 2.8 1869 chr3L 11087033 intron JIL-1 - chr3L 11087968 intron JIL-1 - chr3L 11088902 intron JIL-1 - chr3L_34_11085001 chr3L_11085001 RAL-304_100b 2337 chr3L 11105270 11105329 chr3L 11107006 11107039 X-element 35 1732 15.0 12.5 13.8 2.4 1769 chr3L 11105270 intergenic not near genes chr3L 11106154 intergenic not near genes chr3L 11107039 exon CG32073 - chr3L_35_11105001 chr3L_11105001 RAL-304_100b 2338 chr3L 11113977 11113995 chr3L 11114069 11114097 10 97 12.5 0.0 6.2 1.4 120 chr3L 11113977 intergenic fd68A -,Sod - chr3L 11114037 intergenic fd68A -,Sod - chr3L 11114097 intergenic fd68A -,Sod - chr3L_10_11110001 chr3L_11110001 RAL-304_100b 2339 chr3L 11121589 11121597 chr3L 11122971 11122990 9 1384 115.0 141.0 128.0 0.1 1401 chr3L 11121589 exon mRpL2 + chr3L 11122290 exon Ufd1-like - chr3L 11122990 exon Ufd1-like - chr3L_9_11120001 chr3L_11120001 RAL-304_100b 2340 chr3L 11121588 11121648 chr3L 11122991 11123030 58 1398 143.5 123.5 133.5 0.4 1442 chr3L 11121588 exon mRpL2 + chr3L 11122309 exon Ufd1-like - chr3L 11123030 exon Ufd1-like - chr3L_58_11120001 chr3L_11120001 RAL-304_100b 2341 chr3L 11127185 11127296 chr3L 11127287 11127402 12 99 0.0 0.0 0.0 12.0 217 chr3L 11127185 intron CG42575 + chr3L 11127294 intron CG42575 + chr3L 11127402 intron CG42575 + chr3L_12_11125001 chr3L_11125001 RAL-304_100b 2342 chr3L 11127900 11127957 chr3L 11128028 11128085 35 127 9.0 4.0 6.5 4.7 185 chr3L 11127900 intron CG42575 + chr3L 11127992 intron CG42575 + chr3L 11128085 intron CG42575 + chr3L_35_11125001 chr3L_11125001 RAL-304_100b 2343 chr3L 11131782 11131813 chr3L 11132071 11132092 18 284 13.5 11.0 12.2 1.4 310 chr3L 11131782 intron CG42575 + chr3L 11131937 intron,3` UTR CG42575 +,CG32074 - chr3L 11132092 intron,exon CG42575 +,CG32074 - chr3L_18_11130001 chr3L_11130001 RAL-304_100b 2344 chr3L 11135505 11135804 chr3L 11135760 11135914 49 165 0.0 0.0 0.0 49.0 409 chr3L 11135505 intergenic CG14143 + chr3L 11135710 intergenic CG14143 +,CG32082 + chr3L 11135914 intergenic CG32082 +,CG14143 + chr3L_49_11135001 chr3L_11135001 RAL-304_100b 2345 chr3L 11145534 11145557 chr3L 11145649 11145657 12 114 0.0 17.5 8.8 1.2 123 chr3L 11145534 intron CG32082 + chr3L 11145596 intron CG32082 + chr3L 11145657 intron CG32082 + chr3L_12_11145001 chr3L_11145001 RAL-304_100b 2346 chr3L 11180634 11180657 chr3L 11180767 11180790 16 133 10.5 24.0 17.2 0.9 156 chr3L 11180634 intron GlcAT-P - chr3L 11180712 intron GlcAT-P - chr3L 11180790 intron GlcAT-P - chr3L_16_11180001 chr3L_11180001 RAL-304_100b 2347 chr3L 11224525 11224575 chr3L 11224672 11224721 13 140 8.0 7.5 7.8 1.5 196 chr3L 11224525 intron CG42671 + chr3L 11224623 intron CG42671 + chr3L 11224721 intron CG42671 + chr3L_13_11220001 chr3L_11220001 RAL-304_100b 2348 chr3L 11229969 11230021 chr3L 11230086 11230140 27 118 12.0 4.5 8.2 2.9 171 chr3L 11229969 intergenic CG42671 + chr3L 11230054 intergenic CG42671 + chr3L 11230140 intergenic not near genes chr3L_27_11230001 chr3L_11230001 RAL-304_100b 2349 chr3L 11241770 11241791 chr3L 11241877 11241898 8 107 2.0 8.5 5.2 1.3 128 chr3L 11241770 intergenic not near genes chr3L 11241834 intergenic not near genes chr3L 11241898 intergenic not near genes chr3L_8_11240001 chr3L_11240001 RAL-304_100b 2350 chr3L 11249838 11249892 chr3L 11249946 11249998 38 107 8.5 12.0 10.2 3.4 160 chr3L 11249838 5` UTR CR44717 + chr3L 11249918 5` UTR CR44717 + chr3L 11249998 5` UTR CR44717 + chr3L_38_11245001 chr3L_11245001 RAL-304_100b 2351 chr3L 11264448 11264493 chr3L 11271415 11271458 17.6 38 6970 16.0 9.0 12.5 2.8 7010 chr3L 11264448 intergenic not near genes chr3L 11267953 intergenic not near genes chr3L 11271458 intergenic not near genes chr3L_38_11265001 chr3L_11265001 RAL-304_100b 2352 chr3L 11304590 11304640 chr3L 11304711 11304761 40 116 13.5 3.0 8.2 4.3 171 chr3L 11304590 intergenic not near genes chr3L 11304676 intergenic not near genes chr3L 11304761 intergenic not near genes chr3L_40_11300001 chr3L_11300001 RAL-304_100b 2353 chr3L 11329667 11329704 chr3L 11332897 11332934 jockey 22 3228 21.0 16.5 18.8 1.1 3267 chr3L 11329667 intergenic not near genes chr3L 11331300 intergenic not near genes chr3L 11332934 intergenic not near genes chr3L_22_11330001 chr3L_11330001 RAL-304_100b 2354 chr3L 11329706 11329726 chr3L 11332895 11332939 jockey 13 3219 13.5 15.5 14.5 0.8 3233 chr3L 11329706 intergenic not near genes chr3L 11331322 intergenic not near genes chr3L 11332939 intergenic not near genes chr3L_13_11330001 chr3L_11330001 RAL-304_100b 2355 chr3L 11340501 11340555 chr3L 11340649 11340697 32 142 12.5 11.5 12.0 2.5 196 chr3L 11340501 intergenic not near genes chr3L 11340599 intergenic not near genes chr3L 11340697 intergenic not near genes chr3L_32_11340001 chr3L_11340001 RAL-304_100b 2356 chr3L 11444245 11444259 chr3L 11444354 11444367 5 108 10.5 0.5 5.5 0.8 122 chr3L 11444245 intergenic CR44549 - chr3L 11444306 intergenic CR44549 - chr3L 11444367 intergenic CR44549 - chr3L_5_11440001 chr3L_11440001 RAL-304_100b 2357 chr3L 11445027 11445062 chr3L 11445129 11445164 26 101 1.0 16.5 8.8 2.7 137 chr3L 11445027 3` UTR CR44549 - chr3L 11445096 3` UTR CR44549 - chr3L 11445164 5` UTR CG7557 + chr3L_26_11445001 chr3L_11445001 RAL-304_100b 2358 chr3L 11465752 11465803 chr3L 11465848 11465858 23 98 12.5 13.0 12.8 1.7 106 chr3L 11465752 5` UTR CG6140 - chr3L 11465805 5` UTR CG6140 - chr3L 11465858 5` UTR CG6140 - chr3L_23_11465001 chr3L_11465001 RAL-304_100b 2359 chr3L 11475600 11475639 chr3L 11475716 11475745 21 114 7.0 7.0 7.0 2.6 145 chr3L 11475600 intergenic Vha16-2 + chr3L 11475672 intergenic Vha16-2 + chr3L 11475745 intergenic Vha16-2 + chr3L_21_11475001 chr3L_11475001 RAL-304_100b 2360 chr3L 11493138 11493157 chr3L 11493258 11493272 11 119 10.5 5.5 8.0 1.2 134 chr3L 11493138 intron chrb + chr3L 11493205 intron chrb + chr3L 11493272 intron chrb + chr3L_11_11490001 chr3L_11490001 RAL-304_100b 2361 chr3L 11493158 11493184 chr3L 11493248 11493304 17 117 7.0 3.0 5.0 2.8 146 chr3L 11493158 intron chrb + chr3L 11493231 intron chrb + chr3L 11493304 intron chrb + chr3L_17_11490001 chr3L_11490001 RAL-304_100b 2362 chr3L 11548830 11548879 chr3L 11548935 11548986 34 110 12.0 14.5 13.2 2.4 156 chr3L 11548830 intron Mob2 - chr3L 11548908 intron Mob2 - chr3L 11548986 intron Mob2 - chr3L_34_11545001 chr3L_11545001 RAL-304_100b 2363 chr3L 11564789 11564814 chr3L 11572409 11572424 412 12 7630 14.0 34.5 24.2 0.5 7635 chr3L 11564789 exon CG33267 + chr3L 11568606 intron CG33267 + chr3L 11572424 exon CG33267 + chr3L_12_11565001 chr3L_11565001 RAL-304_100b 2364 chr3L 11579530 11579585 chr3L 11579661 11579716 43 129 7.0 2.0 4.5 7.8 186 chr3L 11579530 intergenic CG43390 - chr3L 11579623 intergenic CG43390 - chr3L 11579716 intergenic CG43390 - chr3L_43_11575001 chr3L_11575001 RAL-304_100b 2365 chr3L 11579714 11579717 chr3L 11580885 11580888 5 1171 3.0 36.0 19.5 0.2 1174 chr3L 11579714 intergenic CG43390 - chr3L 11580301 intergenic CG43390 - chr3L 11580888 exon CG43391 - chr3L_5_11580001 chr3L_11580001 RAL-304_100b 2366 chr3L 11648488 11648511 chr3L 11648596 11648607 15 104 21.5 0.0 10.8 1.3 119 chr3L 11648488 intergenic RIOK1 -,CG7339 + chr3L 11648548 intergenic RIOK1 -,CG7339 + chr3L 11648607 intergenic RIOK1 -,CG7339 + chr3L_15_11645001 chr3L_11645001 RAL-304_100b 2367 chr3L 11678075 11678125 chr3L 11678182 11678236 39 108 6.0 14.0 10.0 3.5 161 chr3L 11678075 intron CG32085 - chr3L 11678156 intron CG32085 - chr3L 11678236 intron CG32085 - chr3L_39_11675001 chr3L_11675001 RAL-304_100b 2368 chr3L 11708665 11708782 chr3L 11708781 11708883 4 110 0.0 0.0 0.0 4.0 218 chr3L 11708665 intergenic CG11658 -,Ccdc56 +,mtTFB1 + chr3L 11708774 intergenic Ccdc56 +,mtTFB1 +,CG11658 - chr3L 11708883 intergenic Ccdc56 +,mtTFB1 +,CG11658 - chr3L_4_11705001 chr3L_11705001 RAL-304_100b 2369 chr3L 11723069 11723110 chr3L 11727883 11727925 Doc 24 4818 15.5 11.5 13.5 1.7 4856 chr3L 11723069 3` UTR Bmcp + chr3L 11725497 intron Bmcp + chr3L 11727925 3` UTR Bmcp + chr3L_24_11725001 chr3L_11725001 RAL-304_100b 2370 chr3L 11740114 11740150 chr3L 11740237 11740257 44 119 32.5 27.5 30.0 1.4 143 chr3L 11740114 intron CG6024 - chr3L 11740186 intron CG6024 - chr3L 11740257 intron CG6024 - chr3L_44_11740001 chr3L_11740001 RAL-304_100b 2371 chr3L 11740151 11740155 chr3L 11740234 11740275 8 113 27.5 26.0 26.8 0.3 124 chr3L 11740151 intron CG6024 - chr3L 11740213 intron CG6024 - chr3L 11740275 intron CG6024 - chr3L_8_11740001 chr3L_11740001 RAL-304_100b 2372 chr3L 11743993 11744003 chr3L 11744126 11744136 7 132 47.0 12.5 29.8 0.2 143 chr3L 11743993 exon CG6024 - chr3L 11744064 intron CG6024 - chr3L 11744136 intron CG6024 - chr3L_7_11740001 chr3L_11740001 RAL-304_100b 2373 chr3L 11744004 11744020 chr3L 11744122 11744131 18 128 34.5 10.5 22.5 0.8 127 chr3L 11744004 exon CG6024 - chr3L 11744068 intron CG6024 - chr3L 11744131 intron CG6024 - chr3L_18_11740001 chr3L_11740001 RAL-304_100b 2374 chr3L 11744025 11744044 chr3L 11744120 11744177 6 116 20.0 10.5 15.2 0.4 152 chr3L 11744025 exon CG6024 - chr3L 11744101 intron CG6024 - chr3L 11744177 intron CG6024 - chr3L_6_11740001 chr3L_11740001 RAL-304_100b 2375 chr3L 11757893 11757933 chr3L 11758015 11758055 17 118 25.5 0.0 12.8 1.2 162 chr3L 11757893 intron CG6024 - chr3L 11757974 intron CG6024 - chr3L 11758055 intron CG6024 - chr3L_17_11755001 chr3L_11755001 RAL-304_100b 2376 chr3L 5132041 5132044 chr3L 11777678 11777678 4 6645636 71.5 52.5 62.0 0.1 6645637 chr3L 5132041 3` UTR CG15212 + chr3L 8454860 intron Gug + chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_4_8450001 chr3L_8450001 RAL-304_100b 2377 chr3L 7749470 7749503 chr3L 11777678 11777678 29 4028206 41.5 52.5 47.0 0.6 4028208 chr3L 7749470 intron,3` UTR CG32373 +,CG13685 + chr3L 9763574 5` UTR CG8177 + chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_29_9760001 chr3L_9760001 RAL-304_100b 2378 chr3L 9313026 9313027 chr3L 11777678 11777678 12 2464652 32.5 52.5 42.5 0.3 2464652 chr3L 9313026 intergenic not near genes chr3L 10545352 intron A2bp1 + chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_12_10545001 chr3L_10545001 RAL-304_100b 2379 chr3L 11777678 11777678 chr3L 12163305 12163305 22 385627 47.0 84.0 65.5 0.3 385627 chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L 11970492 exon Muc68E - chr3L 12163305 intron CG9760 - chr3L_22_11970001 chr3L_11970001 RAL-304_100b 2380 chr3L 11811432 11811443 chr3L 11811535 11811546 12 102 30.0 11.5 20.8 0.6 114 chr3L 11811432 intron CG42255 - chr3L 11811489 intron CG42255 - chr3L 11811546 exon CG42255 - chr3L_12_11810001 chr3L_11810001 RAL-304_100b 2381 chr3L 11811444 11811489 chr3L 11811532 11811592 35 100 13.5 11.0 12.2 2.7 148 chr3L 11811444 intron CG42255 - chr3L 11811518 intron CG42255 - chr3L 11811592 exon CG42255 - chr3L_35_11810001 chr3L_11810001 RAL-304_100b 2382 chr3L 11840136 11840188 chr3L 11840355 11840407 44 217 10.5 9.5 10.0 4.0 271 chr3L 11840136 intergenic not near genes chr3L 11840272 intergenic not near genes chr3L 11840407 intergenic not near genes chr3L_44_11840001 chr3L_11840001 RAL-304_100b 2383 chr3L 11846404 11846420 chr3L 11846514 11846553 10 130 9.5 14.5 12.0 0.8 149 chr3L 11846404 intergenic not near genes chr3L 11846478 intergenic not near genes chr3L 11846553 intergenic not near genes chr3L_10_11845001 chr3L_11845001 RAL-304_100b 2384 chr3L 11847142 11847173 chr3L 11847257 11847283 29 114 10.5 0.0 5.2 4.7 141 chr3L 11847142 intergenic CG12521 - chr3L 11847212 intergenic CG12521 - chr3L 11847283 intergenic CG12521 - chr3L_29_11845001 chr3L_11845001 RAL-304_100b 2385 chr3L 11849308 11849357 chr3L 11849433 11849445 37 119 9.5 8.5 9.0 3.7 137 chr3L 11849308 intergenic not near genes chr3L 11849376 intergenic not near genes chr3L 11849445 intergenic not near genes chr3L_37_11845001 chr3L_11845001 RAL-304_100b 2386 chr3L 11850114 11850156 chr3L 11850234 11850250 29 118 13.0 1.0 7.0 3.6 136 chr3L 11850114 intergenic not near genes chr3L 11850182 intergenic CG44837 - chr3L 11850250 intergenic CG44837 - chr3L_29_11850001 chr3L_11850001 RAL-304_100b 2387 chr3L 11864527 11864584 chr3L 11865847 11865904 pogo 42 1319 10.5 15.0 12.8 3.0 1377 chr3L 11864527 intron CG44837 - chr3L 11865216 intron CG44837 - chr3L 11865904 intron CG44837 - chr3L_42_11865001 chr3L_11865001 RAL-304_100b 2388 chr3L 11902465 11902506 chr3L 11902551 11902607 38 92 10.5 11.0 10.8 3.2 142 chr3L 11902465 intron CG44837 - chr3L 11902536 intron CG44837 - chr3L 11902607 intron CG44837 - chr3L_38_11900001 chr3L_11900001 RAL-304_100b 2389 chr3L 11943469 11943521 chr3L 11943595 11943643 33 123 4.5 13.0 8.8 3.4 174 chr3L 11943469 3` UTR Rpt4R + chr3L 11943556 intergenic Rpt4R +,CG5883 - chr3L 11943643 3` UTR CG5883 - chr3L_33_11940001 chr3L_11940001 RAL-304_100b 2390 chr3L 11984544 11984601 chr3L 11984657 11984725 50 112 7.5 3.0 5.2 8.1 181 chr3L 11984544 intergenic CG6938 + chr3L 11984634 intergenic CG6938 + chr3L 11984725 intergenic CG6938 + chr3L_50_11980001 chr3L_11980001 RAL-304_100b 2391 chr3L 12013886 12013938 chr3L 12014002 12014054 54 115 12.5 13.0 12.8 3.9 168 chr3L 12013886 intron rols - chr3L 12013970 intron rols - chr3L 12014054 intron rols - chr3L_54_12010001 chr3L_12010001 RAL-304_100b 2392 chr3L 12034866 12034919 chr3L 12034967 12035021 27 100 13.0 8.5 10.8 2.3 155 chr3L 12034866 intron rols - chr3L 12034944 intron rols - chr3L 12035021 intron rols - chr3L_27_12030001 chr3L_12030001 RAL-304_100b 2393 chr3L 12052683 12052736 chr3L 12052796 12052850 37 113 15.0 14.0 14.5 2.4 167 chr3L 12052683 intron rols - chr3L 12052766 intron rols - chr3L 12052850 intron rols - chr3L_37_12050001 chr3L_12050001 RAL-304_100b 2394 chr3L 12075400 12075460 chr3L 12075514 12075569 41 111 6.5 0.0 3.2 9.8 169 chr3L 12075400 intron Sema-5c - chr3L 12075484 intron Sema-5c - chr3L 12075569 intron Sema-5c - chr3L_41_12075001 chr3L_12075001 RAL-304_100b 2395 chr3L 12109998 12110058 chr3L 12110163 12110222 55 154 13.5 12.5 13.0 3.9 224 chr3L 12109998 intergenic not near genes chr3L 12110110 intergenic not near genes chr3L 12110222 intergenic not near genes chr3L_55_12110001 chr3L_12110001 RAL-304_100b 2396 chr3L 12183173 12183186 chr3L 12183278 12183291 8 105 41.5 7.5 24.5 0.3 118 chr3L 12183173 3` UTR CAH2 + chr3L 12183232 3` UTR CAH2 + chr3L 12183291 3` UTR CAH2 + chr3L_8_12180001 chr3L_12180001 RAL-304_100b 2397 chr3L 12183187 12183229 chr3L 12183277 12183328 55 95 19.5 7.0 13.2 3.9 141 chr3L 12183187 3` UTR CAH2 + chr3L 12183258 3` UTR CAH2 + chr3L 12183328 3` UTR CAH2 + chr3L_55_12180001 chr3L_12180001 RAL-304_100b 2398 chr3L 12186343 12186400 chr3L 12186462 12186541 13 133 7.0 0.0 3.5 2.9 198 chr3L 12186343 intron CG6910 + chr3L 12186442 intron CG6910 + chr3L 12186541 exon CG6910 + chr3L_13_12185001 chr3L_12185001 RAL-304_100b 2399 chr3L 12196105 12196164 chr3L 12196379 12196438 33 271 11.0 9.5 10.2 2.9 333 chr3L 12196105 intergenic CR45746 - chr3L 12196272 intergenic CR45746 - chr3L 12196438 intergenic CR45746 - chr3L_33_12195001 chr3L_12195001 RAL-304_100b 2400 chr3L 12231373 12231375 chr3L 12231647 12231649 5 274 79.0 101.0 90.0 0.1 276 chr3L 12231373 intron app - chr3L 12231511 intron app - chr3L 12231649 intron app - chr3L_5_12230001 chr3L_12230001 RAL-304_100b 2401 chr3L 12231372 12231431 chr3L 12231651 12231705 44 278 105.0 99.5 102.2 0.4 333 chr3L 12231372 intron app - chr3L 12231538 intron app - chr3L 12231705 intron app - chr3L_44_12230001 chr3L_12230001 RAL-304_100b 2402 chr3L 12249576 12249581 chr3L 12249708 12249714 4 133 48.0 11.0 29.5 0.1 138 chr3L 12249576 intron app - chr3L 12249645 intron app - chr3L 12249714 intron app - chr3L_4_12245001 chr3L_12245001 RAL-304_100b 2403 chr3L 12273075 12273089 chr3L 12273406 12273420 13 331 42.0 12.0 27.0 0.5 345 chr3L 12273075 intron CG4300 - chr3L 12273248 intron CG4300 - chr3L 12273420 intron CG4300 - chr3L_13_12270001 chr3L_12270001 RAL-304_100b 2404 chr3L 12273090 12273134 chr3L 12273404 12273465 32 329 12.5 11.0 11.8 2.5 375 chr3L 12273090 intron CG4300 - chr3L 12273278 intron CG4300 - chr3L 12273465 intron CG4300 - chr3L_32_12270001 chr3L_12270001 RAL-304_100b 2405 chr3L 12332029 12332031 chr3L 12332146 12332148 4 117 40.5 0.0 20.2 0.2 119 chr3L 12332029 intron CG32105 + chr3L 12332088 intron CG32105 + chr3L 12332148 intron CG32105 + chr3L_4_12330001 chr3L_12330001 RAL-304_100b 2406 chr3L 12353899 12353918 chr3L 12354011 12354031 18 111 22.5 22.5 22.5 0.8 132 chr3L 12353899 intergenic not near genes chr3L 12353965 intergenic not near genes chr3L 12354031 intergenic not near genes chr3L_18_12350001 chr3L_12350001 RAL-304_100b 2407 chr3L 12353919 12353953 chr3L 12354009 12354052 41 108 10.0 21.0 15.5 2.5 133 chr3L 12353919 intergenic not near genes chr3L 12353986 intergenic not near genes chr3L 12354052 intergenic not near genes chr3L_41_12350001 chr3L_12350001 RAL-304_100b 2408 chr3L 12364149 12364176 chr3L 12364312 12364338 18 160 3.0 9.0 6.0 2.6 189 chr3L 12364149 intergenic not near genes chr3L 12364244 intergenic not near genes chr3L 12364338 intergenic not near genes chr3L_18_12360001 chr3L_12360001 RAL-304_100b 2409 chr3L 12369525 12369561 chr3L 12369702 12369758 8 196 11.0 0.0 5.5 1.2 233 chr3L 12369525 intron Ncc69 - chr3L 12369642 intron Ncc69 - chr3L 12369758 intron Ncc69 - chr3L_8_12365001 chr3L_12365001 RAL-304_100b 2410 chr3L 12388002 12388010 chr3L 12388104 12388112 5 102 1.5 10.0 5.8 0.7 110 chr3L 12388002 intron Ncc69 - chr3L 12388057 intron Ncc69 - chr3L 12388112 intron Ncc69 - chr3L_5_12385001 chr3L_12385001 RAL-304_100b 2411 chr3L 12406482 12406530 chr3L 12406738 12406779 29 253 10.0 12.0 11.0 2.4 297 chr3L 12406482 intron CG32103 - chr3L 12406630 intron CG32103 - chr3L 12406779 intron CG32103 - chr3L_29_12405001 chr3L_12405001 RAL-304_100b 2412 chr3L 12412896 12412925 chr3L 12413003 12413032 28 107 9.5 11.0 10.2 2.5 136 chr3L 12412896 intron CG32103 - chr3L 12412964 intron CG32103 - chr3L 12413032 intron CG32103 - chr3L_28_12410001 chr3L_12410001 RAL-304_100b 2413 chr3L 12446244 12446300 chr3L 12446347 12446403 56 92 14.0 19.5 16.8 3.1 159 chr3L 12446244 intergenic not near genes chr3L 12446324 intergenic not near genes chr3L 12446403 intergenic not near genes chr3L_56_12445001 chr3L_12445001 RAL-304_100b 2414 chr3L 12458489 12458491 chr3L 12458613 12458615 5 123 12.5 11.5 12.0 0.4 126 chr3L 12458489 intergenic not near genes chr3L 12458552 intergenic not near genes chr3L 12458615 intergenic not near genes chr3L_5_12455001 chr3L_12455001 RAL-304_100b 2415 chr3L 12458496 12458510 chr3L 12458595 12458634 9 121 5.5 8.5 7.0 1.1 138 chr3L 12458496 intergenic not near genes chr3L 12458565 intergenic not near genes chr3L 12458634 intergenic not near genes chr3L_9_12455001 chr3L_12455001 RAL-304_100b 2416 chr3L 12460310 12460343 chr3L 12460396 12460445 27 100 2.0 17.5 9.8 2.5 135 chr3L 12460310 intergenic not near genes chr3L 12460378 intergenic not near genes chr3L 12460445 intergenic not near genes chr3L_27_12460001 chr3L_12460001 RAL-304_100b 2417 chr3L 12485405 12485412 chr3L 12485511 12485518 4 105 0.0 19.5 9.8 0.4 113 chr3L 12485405 intron CG33725 + chr3L 12485462 intron CG33725 + chr3L 12485518 intron CG33725 + chr3L_4_12485001 chr3L_12485001 RAL-304_100b 2418 chr3L 12491683 12491734 chr3L 12491791 12491842 11 101 0.0 14.0 7.0 1.4 159 chr3L 12491683 intergenic CG10657 -,CR45682 +,CR45681 + chr3L 12491762 intergenic CG10657 -,CR45682 + chr3L 12491842 3` UTR,5` UTR CG10657 -,CR45682 + chr3L_11_12490001 chr3L_12490001 RAL-304_100b 2419 chr3L 12541500 12541525 chr3L 12541620 12541638 5 117 0.0 0.0 0.0 5.0 138 chr3L 12541500 intron sowah - chr3L 12541569 intron sowah - chr3L 12541638 intron sowah - chr3L_5_12540001 chr3L_12540001 RAL-304_100b 2420 chr3L 12578052 12578082 chr3L 12578138 12578195 16 110 4.0 0.0 2.0 5.3 143 chr3L 12578052 intergenic not near genes chr3L 12578124 intergenic not near genes chr3L 12578195 intergenic not near genes chr3L_16_12575001 chr3L_12575001 RAL-304_100b 2421 chr3L 12587331 12587379 chr3L 12587439 12587467 13 106 2.0 0.0 1.0 6.5 136 chr3L 12587331 intron ara + chr3L 12587399 intron ara + chr3L 12587467 intron ara + chr3L_13_12585001 chr3L_12585001 RAL-304_100b 2422 chr3L 12612557 12612612 chr3L 12612671 12612730 53 112 10.5 16.0 13.2 3.7 173 chr3L 12612557 intron caup + chr3L 12612644 intron caup + chr3L 12612730 intron caup + chr3L_53_12610001 chr3L_12610001 RAL-304_100b 2423 chr3L 12614575 12614598 chr3L 12614738 12614761 8 162 0.0 10.5 5.2 1.3 186 chr3L 12614575 intron caup + chr3L 12614668 intron caup + chr3L 12614761 intron caup + chr3L_8_12610001 chr3L_12610001 RAL-304_100b 2424 chr3L 12626134 12626166 chr3L 12626262 12626296 24 132 10.0 2.0 6.0 3.4 162 chr3L 12626134 intergenic not near genes chr3L 12626215 intergenic not near genes chr3L 12626296 intergenic not near genes chr3L_24_12625001 chr3L_12625001 RAL-304_100b 2425 chr3L 12633185 12633185 chr3L 13180603 13180612 4 547424 46.5 23.5 35.0 0.1 547427 chr3L 12633185 intron CR32111 + chr3L 12906898 intergenic not near genes chr3L 13180612 intergenic not near genes chr3L_4_12905001 chr3L_12905001 RAL-304_100b 2426 chr3L 12705429 12705440 chr3L 12705526 12705530 14 104 2.5 33.5 18.0 0.7 101 chr3L 12705429 intron mirr + chr3L 12705480 intron mirr + chr3L 12705530 intron mirr + chr3L_14_12705001 chr3L_12705001 RAL-304_100b 2427 chr3L 12705442 12705454 chr3L 12705524 12705526 15 97 2.5 31.0 16.8 0.8 84 chr3L 12705442 intron mirr + chr3L 12705484 intron mirr + chr3L 12705526 intron mirr + chr3L_15_12705001 chr3L_12705001 RAL-304_100b 2428 chr3L 12720300 12720359 chr3L 12720410 12720451 41 108 13.5 11.5 12.5 3.0 151 chr3L 12720300 intergenic not near genes chr3L 12720376 intergenic not near genes chr3L 12720451 intergenic not near genes chr3L_41_12720001 chr3L_12720001 RAL-304_100b 2429 chr3L 12728017 12728044 chr3L 12728126 12728153 4 108 4.5 7.5 6.0 0.6 136 chr3L 12728017 intergenic not near genes chr3L 12728085 intergenic not near genes chr3L 12728153 intergenic not near genes chr3L_4_12725001 chr3L_12725001 RAL-304_100b 2430 chr3L 12799816 12799833 chr3L 12799949 12799966 9 133 13.0 25.0 19.0 0.5 150 chr3L 12799816 intron Atg1 - chr3L 12799891 intron Atg1 - chr3L 12799966 intron Atg1 - chr3L_9_12795001 chr3L_12795001 RAL-304_100b 2431 chr3L 12827911 12827940 chr3L 12828021 12828043 21 108 17.0 0.0 8.5 2.2 132 chr3L 12827911 intron CG10960 - chr3L 12827977 intron CG10960 - chr3L 12828043 intron CG10960 - chr3L_21_12825001 chr3L_12825001 RAL-304_100b 2432 chr3L 12857969 12858000 chr3L 12858089 12858120 19 120 7.5 4.5 6.0 2.7 151 chr3L 12857969 3` UTR CG32107 - chr3L 12858044 3` UTR CG32107 - chr3L 12858120 3` UTR CG32107 - chr3L_19_12855001 chr3L_12855001 RAL-304_100b 2433 chr3L 12874901 12874957 chr3L 12877218 12877239 jockey 37 2314 9.0 7.5 8.2 4.0 2338 chr3L 12874901 intergenic not near genes chr3L 12876070 intergenic not near genes chr3L 12877239 intergenic not near genes chr3L_37_12875001 chr3L_12875001 RAL-304_100b 2434 chr3L 12892899 12892909 chr3L 12893030 12893040 4 131 8.0 7.0 7.5 0.5 141 chr3L 12892899 intron CG14118 + chr3L 12892970 intron CG14118 + chr3L 12893040 intron CG14118 + chr3L_4_12890001 chr3L_12890001 RAL-304_100b 2435 chr3L 12894781 12894800 chr3L 12894884 12894901 17 102 30.5 34.0 32.2 0.5 120 chr3L 12894781 intergenic CG14118 + chr3L 12894841 intergenic CG14118 + chr3L 12894901 intergenic CG14118 + chr3L_17_12890001 chr3L_12890001 RAL-304_100b 2436 chr3L 12894802 12894815 chr3L 12894882 12894905 16 98 27.5 34.0 30.8 0.5 103 chr3L 12894802 intergenic CG14118 + chr3L 12894854 intergenic CG14118 + chr3L 12894905 intergenic CG14118 + chr3L_16_12890001 chr3L_12890001 RAL-304_100b 2437 chr3L 12919252 12919283 chr3L 12924761 12924777 Rt1c 12 5504 26.0 11.5 18.8 0.6 5525 chr3L 12919252 intergenic not near genes chr3L 12922014 intergenic not near genes chr3L 12924777 intergenic not near genes chr3L_12_12920001 chr3L_12920001 RAL-304_100b 2438 chr3L 12929707 12929744 chr3L 12930048 12930085 33 339 0.5 18.5 9.5 3.1 378 chr3L 12929707 intergenic not near genes chr3L 12929896 intergenic not near genes chr3L 12930085 intergenic not near genes chr3L_33_12925001 chr3L_12925001 RAL-304_100b 2439 chr3L 12957764 12957796 chr3L 12962271 12962303 copia 27 4507 20.0 16.0 18.0 1.4 4539 chr3L 12957764 intergenic not near genes chr3L 12960034 intergenic not near genes chr3L 12962303 intergenic not near genes chr3L_27_12960001 chr3L_12960001 RAL-304_100b 2440 chr3L 12957799 12957816 chr3L 12962266 12962323 copia 16 4500 13.5 12.5 13.0 1.1 4524 chr3L 12957799 intergenic not near genes chr3L 12960061 intergenic not near genes chr3L 12962323 intergenic not near genes chr3L_16_12960001 chr3L_12960001 RAL-304_100b 2441 chr3L 12967110 12967117 chr3L 12967219 12967225 6 108 50.0 16.0 33.0 0.2 115 chr3L 12967110 exon Or69a - chr3L 12967168 exon Or69a - chr3L 12967225 exon Or69a - chr3L_6_12965001 chr3L_12965001 RAL-304_100b 2442 chr3L 12967118 12967124 chr3L 12967218 12967233 7 107 47.0 15.0 31.0 0.2 115 chr3L 12967118 exon Or69a - chr3L 12967176 exon Or69a - chr3L 12967233 exon Or69a - chr3L_7_12965001 chr3L_12965001 RAL-304_100b 2443 chr3L 12967125 12967151 chr3L 12967217 12967258 31 102 28.5 14.5 21.5 1.4 133 chr3L 12967125 exon Or69a - chr3L 12967192 exon Or69a - chr3L 12967258 exon Or69a - chr3L_31_12965001 chr3L_12965001 RAL-304_100b 2444 chr3L 12967152 12967167 chr3L 12967216 12967276 20 96 19.0 14.5 16.8 1.1 124 chr3L 12967152 exon Or69a - chr3L 12967214 exon Or69a - chr3L 12967276 exon Or69a - chr3L_20_12965001 chr3L_12965001 RAL-304_100b 2445 chr3L 13015697 13015749 chr3L 13015804 13015856 25 107 3.5 10.5 7.0 3.1 159 chr3L 13015697 intergenic CG11267 +,MICAL-like - chr3L 13015776 intergenic CG11267 +,MICAL-like - chr3L 13015856 intergenic CG11267 + chr3L_25_13015001 chr3L_13015001 RAL-304_100b 2446 chr3L 13031550 13031608 chr3L 13031662 13031720 54 108 8.5 14.0 11.2 4.4 170 chr3L 13031550 intron CG17672 + chr3L 13031635 intron CG17672 + chr3L 13031720 intron CG17672 + chr3L_54_13030001 chr3L_13030001 RAL-304_100b 2447 chr3L 13047718 13047766 chr3L 13047823 13047871 23 104 15.0 17.0 16.0 1.4 153 chr3L 13047718 3` UTR CG11279 + chr3L 13047794 3` UTR CG11279 + chr3L 13047871 3` UTR CG11279 + chr3L_23_13045001 chr3L_13045001 RAL-304_100b 2448 chr3L 13074015 13074031 chr3L 13074176 13074191 12 161 30.5 16.5 23.5 0.5 176 chr3L 13074015 intergenic not near genes chr3L 13074103 intergenic not near genes chr3L 13074191 intergenic not near genes chr3L_12_13070001 chr3L_13070001 RAL-304_100b 2449 chr3L 13074034 13074074 chr3L 13074175 13074208 29 152 10.0 16.5 13.2 2.0 174 chr3L 13074034 intergenic not near genes chr3L 13074121 intergenic not near genes chr3L 13074208 intergenic not near genes chr3L_29_13070001 chr3L_13070001 RAL-304_100b 2450 chr3L 13095797 13095834 chr3L 13095910 13095922 18 110 17.0 0.5 8.8 1.8 125 chr3L 13095797 intergenic not near genes chr3L 13095860 intergenic not near genes chr3L 13095922 intergenic not near genes chr3L_18_13095001 chr3L_13095001 RAL-304_100b 2451 chr3L 13144095 13144149 chr3L 13144197 13144251 31 101 7.0 11.0 9.0 3.1 156 chr3L 13144095 intergenic not near genes chr3L 13144173 intergenic not near genes chr3L 13144251 intergenic not near genes chr3L_31_13140001 chr3L_13140001 RAL-304_100b 2452 chr3L 13159265 13159297 chr3L 13159369 13159401 31 101 12.0 11.5 11.8 2.4 136 chr3L 13159265 intergenic not near genes chr3L 13159333 intergenic not near genes chr3L 13159401 intergenic not near genes chr3L_31_13155001 chr3L_13155001 RAL-304_100b 2453 chr3L 13206210 13206230 chr3L 13206316 13206336 18 106 22.5 14.0 18.2 0.9 126 chr3L 13206210 intergenic not near genes chr3L 13206273 intergenic not near genes chr3L 13206336 intergenic not near genes chr3L_18_13205001 chr3L_13205001 RAL-304_100b 2454 chr3L 13206231 13206238 chr3L 13206315 13206344 10 103 18.0 13.5 15.8 0.6 113 chr3L 13206231 intergenic not near genes chr3L 13206288 intergenic not near genes chr3L 13206344 intergenic not near genes chr3L_10_13205001 chr3L_13205001 RAL-304_100b 2455 chr3L 13223218 13223242 chr3L 13223295 13223344 13 99 8.0 24.0 16.0 0.8 126 chr3L 13223218 intergenic not near genes chr3L 13223281 intergenic not near genes chr3L 13223344 intergenic not near genes chr3L_13_13220001 chr3L_13220001 RAL-304_100b 2456 chr3L 13229397 13229403 chr3L 13229518 13229524 4 121 10.5 8.5 9.5 0.4 127 chr3L 13229397 intron caps + chr3L 13229460 intron caps + chr3L 13229524 intron caps + chr3L_4_13225001 chr3L_13225001 RAL-304_100b 2457 chr3L 13229406 13229440 chr3L 13229517 13229559 9 119 1.0 8.5 4.8 1.6 153 chr3L 13229406 intron caps + chr3L 13229482 intron caps + chr3L 13229559 intron caps + chr3L_9_13225001 chr3L_13225001 RAL-304_100b 2458 chr3L 13280276 13280330 chr3L 13280405 13280459 63 128 20.0 11.5 15.8 3.8 183 chr3L 13280276 intergenic not near genes chr3L 13280368 intergenic not near genes chr3L 13280459 intergenic not near genes chr3L_63_13280001 chr3L_13280001 RAL-304_100b 2459 chr3L 13296495 13296548 chr3L 13296611 13296664 37 113 13.0 8.5 10.8 3.1 169 chr3L 13296495 intergenic Sfp70A4 - chr3L 13296580 3` UTR Sfp70A4 - chr3L 13296664 3` UTR Sfp70A4 - chr3L_37_13295001 chr3L_13295001 RAL-304_100b 2460 chr3L 13299367 13299410 chr3L 13299483 13299526 21 115 10.5 5.0 7.8 2.4 159 chr3L 13299367 intergenic CG42481 -,CG43147 - chr3L 13299446 intergenic CG43147 -,CG42481 - chr3L 13299526 intergenic CG43147 - chr3L_21_13295001 chr3L_13295001 RAL-304_100b 2461 chr3L 13305666 13305709 chr3L 13305796 13305839 38 127 12.5 22.0 17.2 2.1 173 chr3L 13305666 intergenic not near genes chr3L 13305752 intergenic not near genes chr3L 13305839 intergenic not near genes chr3L_38_13305001 chr3L_13305001 RAL-304_100b 2462 chr3L 13315833 13315865 chr3L 13315945 13315976 11 111 7.0 11.5 9.2 1.1 143 chr3L 13315833 intergenic not near genes chr3L 13315904 intergenic not near genes chr3L 13315976 intergenic not near genes chr3L_11_13315001 chr3L_13315001 RAL-304_100b 2463 chr3L 13337145 13337158 chr3L 13337261 13337274 7 116 5.5 9.0 7.2 0.9 129 chr3L 13337145 intergenic not near genes chr3L 13337210 intergenic not near genes chr3L 13337274 intergenic not near genes chr3L_7_13335001 chr3L_13335001 RAL-304_100b 2464 chr3L 13361937 13361991 chr3L 13362056 13362110 45 117 10.5 12.5 11.5 3.6 173 chr3L 13361937 intergenic not near genes chr3L 13362024 intergenic not near genes chr3L 13362110 intergenic not near genes chr3L_45_13360001 chr3L_13360001 RAL-304_100b 2465 chr3L 13365020 13365064 chr3L 13365123 13365149 19 100 16.0 1.5 8.8 1.9 129 chr3L 13365020 intergenic not near genes chr3L 13365084 intergenic not near genes chr3L 13365149 intergenic not near genes chr3L_19_13365001 chr3L_13365001 RAL-304_100b 2466 chr3L 13374224 13374272 chr3L 13374338 13374386 32 113 10.0 8.5 9.2 3.1 162 chr3L 13374224 intergenic not near genes chr3L 13374305 intergenic not near genes chr3L 13374386 intergenic not near genes chr3L_32_13370001 chr3L_13370001 RAL-304_100b 2467 chr3L 13379666 13379672 chr3L 13379861 13379867 5 195 15.5 0.0 7.8 0.6 201 chr3L 13379666 intron CG14111 + chr3L 13379766 intron CG14111 + chr3L 13379867 intron CG14111 + chr3L_5_13375001 chr3L_13375001 RAL-304_100b 2468 chr3L 13392740 13392766 chr3L 13392848 13392849 24 106 27.5 0.0 13.8 1.6 109 chr3L 13392740 intergenic not near genes chr3L 13392794 intergenic not near genes chr3L 13392849 intergenic not near genes chr3L_24_13390001 chr3L_13390001 RAL-304_100b 2469 chr3L 13452642 13452684 chr3L 13452755 13452797 21 110 0.0 14.0 7.0 2.6 155 chr3L 13452642 intron CG10738 + chr3L 13452720 intron CG10738 + chr3L 13452797 intron CG10738 + chr3L_21_13450001 chr3L_13450001 RAL-304_100b 2470 chr3L 13455728 13455784 chr3L 13455908 13455963 37 177 11.0 15.5 13.2 2.6 235 chr3L 13455728 intron CG10738 + chr3L 13455846 intron CG10738 + chr3L 13455963 intron CG10738 + chr3L_37_13455001 chr3L_13455001 RAL-304_100b 2471 chr3L 13525136 13525170 chr3L 13532957 13532991 roo 30 7820 22.5 24.0 23.2 1.2 7855 chr3L 13525136 intergenic not near genes chr3L 13529064 intergenic not near genes chr3L 13532991 intergenic not near genes chr3L_30_13525001 chr3L_13525001 RAL-304_100b 2472 chr3L 13525172 13525190 chr3L 13532993 13532996 roo 9 7818 11.0 39.5 25.2 0.3 7824 chr3L 13525172 intergenic not near genes chr3L 13529084 intergenic not near genes chr3L 13532996 intergenic not near genes chr3L_9_13525001 chr3L_13525001 RAL-304_100b 2473 chr3L 13559942 13559952 chr3L 13560053 13560063 10 110 33.5 21.5 27.5 0.4 121 chr3L 13559942 intron bru-3 - chr3L 13560002 intron bru-3 - chr3L 13560063 intron bru-3 - chr3L_10_13560001 chr3L_13560001 RAL-304_100b 2474 chr3L 13559953 13559996 chr3L 13560047 13560107 51 107 10.5 19.0 14.8 3.2 154 chr3L 13559953 intron bru-3 - chr3L 13560030 intron bru-3 - chr3L 13560107 intron bru-3 - chr3L_51_13560001 chr3L_13560001 RAL-304_100b 2475 chr3L 13574606 13574613 chr3L 13580140 13580149 Rt1c 7 5536 49.5 25.5 37.5 0.2 5543 chr3L 13574606 intron bru-3 - chr3L 13577378 intron bru-3 - chr3L 13580149 intron bru-3 - chr3L_7_13575001 chr3L_13575001 RAL-304_100b 2476 chr3L 13574614 13574620 chr3L 13580132 13580157 Rt1c 13 5528 44.5 22.5 33.5 0.4 5543 chr3L 13574614 intron bru-3 - chr3L 13577386 intron bru-3 - chr3L 13580157 intron bru-3 - chr3L_13_13575001 chr3L_13575001 RAL-304_100b 2477 chr3L 13624586 13624618 chr3L 13624888 13624899 8 293 32.5 22.5 27.5 0.3 313 chr3L 13624586 intron bru-3 - chr3L 13624742 intron bru-3 - chr3L 13624899 intron bru-3 - chr3L_8_13620001 chr3L_13620001 RAL-304_100b 2478 chr3L 13629504 13629547 chr3L 13629638 13629681 40 132 17.0 23.0 20.0 1.9 177 chr3L 13629504 intron bru-3 - chr3L 13629592 intron bru-3 - chr3L 13629681 intron bru-3 - chr3L_40_13625001 chr3L_13625001 RAL-304_100b 2479 chr3L 13689356 13689406 chr3L 13689459 13689464 41 98 18.5 21.0 19.8 2.0 108 chr3L 13689356 intron bru-3 - chr3L 13689410 intron bru-3 - chr3L 13689464 intron bru-3 - chr3L_41_13685001 chr3L_13685001 RAL-304_100b 2480 chr3L 13768987 13769024 chr3L 13769102 13769138 14 114 0.0 8.0 4.0 2.8 151 chr3L 13768987 intron bru-3 - chr3L 13769062 intron bru-3 - chr3L 13769138 intron bru-3 - chr3L_14_13765001 chr3L_13765001 RAL-304_100b 2481 chr3L 13791227 13791285 chr3L 13791342 13791379 41 112 8.0 7.0 7.5 4.8 152 chr3L 13791227 intron bru-3 - chr3L 13791303 intron bru-3 - chr3L 13791379 intron bru-3 - chr3L_41_13790001 chr3L_13790001 RAL-304_100b 2482 chr3L 13804525 13804569 chr3L 13822836 13822880 roo 28 18309 12.5 15.0 13.8 1.9 18355 chr3L 13804525 intergenic not near genes chr3L 13813702 intergenic not near genes chr3L 13822880 intergenic not near genes chr3L_28_13810001 chr3L_13810001 RAL-304_100b 2483 chr3L 13884365 13884384 chr3L 13884470 13884500 15 114 29.5 12.5 21.0 0.7 135 chr3L 13884365 intron dysc - chr3L 13884432 intron dysc - chr3L 13884500 intron dysc - chr3L_15_13880001 chr3L_13880001 RAL-304_100b 2484 chr3L 13931308 13931368 chr3L 13931438 13931498 12 126 4.0 0.0 2.0 4.0 190 chr3L 13931308 intron Gl + chr3L 13931403 intron Gl + chr3L 13931498 intron Gl + chr3L_12_13930001 chr3L_13930001 RAL-304_100b 2485 chr3L 13941599 13941645 chr3L 13941718 13941764 20 117 9.5 7.0 8.2 2.2 165 chr3L 13941599 intron CG32137 + chr3L 13941682 intron CG32137 + chr3L 13941764 intron CG32137 + chr3L_20_13940001 chr3L_13940001 RAL-304_100b 2486 chr3L 13948604 13948659 chr3L 13948707 13948755 44 91 17.5 23.0 20.2 2.1 151 chr3L 13948604 intron CG32137 + chr3L 13948680 intron CG32137 + chr3L 13948755 intron CG32137 + chr3L_44_13945001 chr3L_13945001 RAL-304_100b 2487 chr3L 13981173 13981218 chr3L 13981297 13981334 30 123 8.0 13.5 10.8 2.5 161 chr3L 13981173 intron CG17364 - chr3L 13981254 intron CG17364 - chr3L 13981334 intron CG17364 - chr3L_30_13980001 chr3L_13980001 RAL-304_100b 2488 chr3L 13999356 13999383 chr3L 13999465 13999494 6 112 0.5 5.5 3.0 1.5 138 chr3L 13999356 intergenic CG8783 -,CG17359 - chr3L 13999425 3` UTR CG8783 - chr3L 13999494 3` UTR CG8783 - chr3L_6_13995001 chr3L_13995001 RAL-304_100b 2489 chr3L 14076282 14076294 chr3L 14076385 14076394 10 101 0.5 18.5 9.5 1.0 112 chr3L 14076282 intron btl + chr3L 14076338 intron btl + chr3L 14076394 intron btl + chr3L_10_14075001 chr3L_14075001 RAL-304_100b 2490 chr3L 14076295 14076321 chr3L 14076381 14076424 30 101 0.5 16.5 8.5 3.2 129 chr3L 14076295 intron btl + chr3L 14076360 intron btl + chr3L 14076424 intron btl + chr3L_30_14075001 chr3L_14075001 RAL-304_100b 2491 chr3L 14107254 14107295 chr3L 14107340 14107397 8 94 14.0 0.5 7.2 1.0 143 chr3L 14107254 intron Sox21a - chr3L 14107326 intron Sox21a - chr3L 14107397 intron Sox21a - chr3L_8_14105001 chr3L_14105001 RAL-304_100b 2492 chr3L 14165166 14165195 chr3L 14165269 14165293 16 100 18.5 11.5 15.0 1.0 127 chr3L 14165166 intergenic not near genes chr3L 14165230 intergenic not near genes chr3L 14165293 intergenic not near genes chr3L_16_14165001 chr3L_14165001 RAL-304_100b 2493 chr3L 14165197 14165217 chr3L 14165264 14165300 14 92 11.5 9.5 10.5 1.2 103 chr3L 14165197 intergenic not near genes chr3L 14165248 intergenic not near genes chr3L 14165300 intergenic not near genes chr3L_14_14165001 chr3L_14165001 RAL-304_100b 2494 chr3L 14168321 14168331 chr3L 14168427 14168433 6 105 8.0 0.0 4.0 1.2 112 chr3L 14168321 intergenic not near genes chr3L 14168377 intergenic not near genes chr3L 14168433 intergenic not near genes chr3L_6_14165001 chr3L_14165001 RAL-304_100b 2495 chr3L 14175345 14175362 chr3L 14175505 14175535 8 171 12.0 4.5 8.2 0.9 190 chr3L 14175345 intergenic D - chr3L 14175440 intergenic D - chr3L 14175535 intergenic D - chr3L_8_14175001 chr3L_14175001 RAL-304_100b 2496 chr3L 14194697 14194739 chr3L 14194798 14194840 24 99 12.5 5.5 9.0 2.4 143 chr3L 14194697 intron nuf + chr3L 14194768 intron nuf + chr3L 14194840 intron nuf + chr3L_24_14190001 chr3L_14190001 RAL-304_100b 2497 chr3L 14199319 14199350 chr3L 14199435 14199466 24 115 17.5 8.5 13.0 1.7 147 chr3L 14199319 intron nuf + chr3L 14199392 intron nuf + chr3L 14199466 intron nuf + chr3L_24_14195001 chr3L_14195001 RAL-304_100b 2498 chr3L 14199351 14199373 chr3L 14199432 14199489 19 111 11.0 7.5 9.2 1.9 138 chr3L 14199351 intron nuf + chr3L 14199420 intron nuf + chr3L 14199489 intron nuf + chr3L_19_14195001 chr3L_14195001 RAL-304_100b 2499 chr3L 14209272 14209322 chr3L 14209381 14209431 21 105 11.0 7.0 9.0 2.1 159 chr3L 14209272 intron nuf + chr3L 14209352 intron nuf + chr3L 14209431 intron nuf + chr3L_21_14205001 chr3L_14205001 RAL-304_100b 2500 chr3L 14211413 14211467 chr3L 14211516 14211570 27 102 5.5 6.0 5.8 4.0 157 chr3L 14211413 intron nuf + chr3L 14211492 intron nuf + chr3L 14211570 intron nuf + chr3L_27_14210001 chr3L_14210001 RAL-304_100b 2501 chr3L 14215036 14215090 chr3L 14215141 14215195 41 102 9.0 20.5 14.8 2.6 159 chr3L 14215036 intron nuf + chr3L 14215116 intron nuf + chr3L 14215195 intron nuf + chr3L_41_14215001 chr3L_14215001 RAL-304_100b 2502 chr3L 14245547 14245558 chr3L 14245666 14245677 7 119 44.5 14.0 29.2 0.2 130 chr3L 14245547 3` UTR CR44561 - chr3L 14245612 3` UTR CR44561 - chr3L 14245677 3` UTR CR44561 - chr3L_7_14245001 chr3L_14245001 RAL-304_100b 2503 chr3L 14245560 14245594 chr3L 14245663 14245713 1360 36 115 21.5 13.5 17.5 1.9 153 chr3L 14245560 3` UTR CR44561 - chr3L 14245636 3` UTR CR44561 - chr3L 14245713 intergenic CR44561 -,CR44560 + chr3L_36_14245001 chr3L_14245001 RAL-304_100b 2504 chr3L 14267353 14267384 chr3L 14271813 14271833 F-element 14 4460 21.5 11.0 16.2 0.8 4480 chr3L 14267353 intergenic not near genes chr3L 14269593 intergenic not near genes chr3L 14271833 intergenic not near genes chr3L_14_14265001 chr3L_14265001 RAL-304_100b 2505 chr3L 14267385 14267396 chr3L 14271811 14271850 F-element 9 4438 14.5 11.0 12.8 0.7 4465 chr3L 14267385 intergenic not near genes chr3L 14269618 intergenic not near genes chr3L 14271850 intergenic not near genes chr3L_9_14265001 chr3L_14265001 RAL-304_100b 2506 chr3L 14282597 14282607 chr3L 14282680 14282712 18 101 0.0 28.5 14.2 1.2 115 chr3L 14282597 intron fz + chr3L 14282654 intron fz + chr3L 14282712 intron fz + chr3L_18_14280001 chr3L_14280001 RAL-304_100b 2507 chr3L 14295964 14295967 chr3L 14296469 14296478 roo 5 509 41.5 20.5 31.0 0.2 514 chr3L 14295964 intron fz + chr3L 14296221 intron fz + chr3L 14296478 intron fz + chr3L_5_14295001 chr3L_14295001 RAL-304_100b 2508 chr3L 14295968 14295970 chr3L 14296468 14296481 roo 8 506 38.0 20.5 29.2 0.3 513 chr3L 14295968 intron fz + chr3L 14296224 intron fz + chr3L 14296481 intron fz + chr3L_8_14295001 chr3L_14295001 RAL-304_100b 2509 chr3L 14295972 14296012 chr3L 14296467 14296523 roo 53 504 16.0 20.5 18.2 2.8 551 chr3L 14295972 intron fz + chr3L 14296248 intron fz + chr3L 14296523 intron fz + chr3L_53_14295001 chr3L_14295001 RAL-304_100b 2510 chr3L 14312015 14312022 chr3L 14316844 14316861 X-element 4 4834 31.0 24.5 27.8 0.1 4846 chr3L 14312015 exon fz + chr3L 14314438 intron fz + chr3L 14316861 intron fz + chr3L_4_14310001 chr3L_14310001 RAL-304_100b 2511 chr3L 14312023 14312058 chr3L 14316837 14316876 X-element 33 4819 15.5 19.0 17.2 1.8 4853 chr3L 14312023 exon fz + chr3L 14314450 intron fz + chr3L 14316876 intron fz + chr3L_33_14310001 chr3L_14310001 RAL-304_100b 2512 chr3L 14331434 14331489 chr3L 14331542 14331580 32 104 9.0 17.5 13.2 2.3 146 chr3L 14331434 intron fz + chr3L 14331507 intron fz + chr3L 14331580 intron fz + chr3L_32_14330001 chr3L_14330001 RAL-304_100b 2513 chr3L 14338274 14338327 chr3L 14338395 14338432 29 120 1.5 8.5 5.0 4.8 158 chr3L 14338274 intron fz + chr3L 14338353 intron fz + chr3L 14338432 intron fz + chr3L_29_14335001 chr3L_14335001 RAL-304_100b 2514 chr3L 14341404 14341438 chr3L 14341549 14341591 17 157 0.5 6.0 3.2 4.0 187 chr3L 14341404 intron fz + chr3L 14341498 intron fz + chr3L 14341591 intron fz + chr3L_17_14340001 chr3L_14340001 RAL-304_100b 2515 chr3L 14429977 14430008 chr3L 14430080 14430111 6 103 3.0 3.5 3.2 1.4 134 chr3L 14429977 intron bbg - chr3L 14430044 intron bbg - chr3L 14430111 intron bbg - chr3L_6_14430001 chr3L_14430001 RAL-304_100b 2516 chr3L 14441566 14441626 chr3L 14441740 14441799 37 172 5.5 10.5 8.0 4.1 233 chr3L 14441566 intron bbg - chr3L 14441682 intron bbg - chr3L 14441799 intron bbg - chr3L_37_14440001 chr3L_14440001 RAL-304_100b 2517 chr3L 14468429 14468476 chr3L 14473655 14473707 copia 37 5229 13.0 15.5 14.2 2.4 5278 chr3L 14468429 intron bbg - chr3L 14471068 intron bbg - chr3L 14473707 intron bbg - chr3L_37_14470001 chr3L_14470001 RAL-304_100b 2518 chr3L 14485993 14486000 chr3L 14486099 14486106 7 106 28.0 8.5 18.2 0.4 113 chr3L 14485993 intron bbg - chr3L 14486050 intron bbg - chr3L 14486106 intron bbg - chr3L_7_14485001 chr3L_14485001 RAL-304_100b 2519 chr3L 14486002 14486044 chr3L 14486098 14486129 24 102 11.5 7.5 9.5 2.3 127 chr3L 14486002 intron bbg - chr3L 14486066 intron bbg - chr3L 14486129 intron bbg - chr3L_24_14485001 chr3L_14485001 RAL-304_100b 2520 chr3L 14522077 14522130 chr3L 14522201 14522254 24 122 6.5 8.0 7.2 2.9 177 chr3L 14522077 intron bbg - chr3L 14522166 intron bbg - chr3L 14522254 intron bbg - chr3L_24_14520001 chr3L_14520001 RAL-304_100b 2521 chr3L 14546805 14546815 chr3L 14546916 14546941 11 122 0.0 15.0 7.5 1.3 136 chr3L 14546805 intron CG9238 - chr3L 14546873 intron CG9238 - chr3L 14546941 intron CG9238 - chr3L_11_14545001 chr3L_14545001 RAL-304_100b 2522 chr3L 14702012 14702020 chr3L 14702102 14702124 8 99 0.0 13.5 6.8 1.0 112 chr3L 14702012 intron ome + chr3L 14702068 intron ome + chr3L 14702124 intron ome + chr3L_8_14700001 chr3L_14700001 RAL-304_100b 2523 chr3L 14721164 14721209 chr3L 14723027 14723077 Rt1c 44 1863 16.5 22.0 19.2 2.2 1913 chr3L 14721164 intron ome + chr3L 14722120 intron ome + chr3L 14723077 intron ome + chr3L_44_14720001 chr3L_14720001 RAL-304_100b 2524 chr3L 14725583 14725616 chr3L 14728602 14728635 Doc 10 3019 10.5 17.5 14.0 0.7 3052 chr3L 14725583 intron ome + chr3L 14727109 intron ome + chr3L 14728635 intron ome + chr3L_10_14725001 chr3L_14725001 RAL-304_100b 2525 chr3L 14741117 14741169 chr3L 14741220 14741260 34 101 12.0 15.5 13.8 2.3 143 chr3L 14741117 intron ome + chr3L 14741188 intron ome + chr3L 14741260 intron ome + chr3L_34_14740001 chr3L_14740001 RAL-304_100b 2526 chr3L 14825136 14825154 chr3L 14832888 14832905 Stalker2 9 7750 1.5 13.5 7.5 1.1 7769 chr3L 14825136 intron CG17839 + chr3L 14829020 intron CG17839 + chr3L 14832905 intron CG17839 + chr3L_9_14825001 chr3L_14825001 RAL-304_100b 2527 chr3L 14840333 14840392 chr3L 14840462 14840507 35 125 4.5 15.0 9.8 3.2 174 chr3L 14840333 intron CG17839 + chr3L 14840420 intron CG17839 + chr3L 14840507 intron CG17839 + chr3L_35_14840001 chr3L_14840001 RAL-304_100b 2528 chr3L 14922082 14922104 chr3L 14922215 14922237 19 133 26.0 6.0 16.0 1.1 155 chr3L 14922082 intron DCX-EMAP + chr3L 14922160 intron DCX-EMAP + chr3L 14922237 intron DCX-EMAP + chr3L_19_14920001 chr3L_14920001 RAL-304_100b 2529 chr3L 14922108 14922129 chr3L 14922214 14922231 10 118 16.5 6.0 11.2 0.8 123 chr3L 14922108 intron DCX-EMAP + chr3L 14922170 intron DCX-EMAP + chr3L 14922231 intron DCX-EMAP + chr3L_10_14920001 chr3L_14920001 RAL-304_100b 2530 chr3L 14959971 14960016 chr3L 14960080 14960125 15 108 3.5 6.0 4.8 2.6 154 chr3L 14959971 intergenic not near genes chr3L 14960048 intergenic not near genes chr3L 14960125 intergenic not near genes chr3L_15_14960001 chr3L_14960001 RAL-304_100b 2531 chr3L 14970737 14970764 chr3L 14971072 14971099 F-element 8 335 7.5 4.5 6.0 1.1 362 chr3L 14970737 intergenic Tom + chr3L 14970918 intergenic not near genes chr3L 14971099 intergenic not near genes chr3L_8_14970001 chr3L_14970001 RAL-304_100b 2532 chr3L 15085027 15085038 chr3L 15086218 15086229 1360 9 1190 20.0 14.5 17.2 0.5 1202 chr3L 15085027 intron cp309 - chr3L 15085628 intron cp309 - chr3L 15086229 intron cp309 - chr3L_9_15085001 chr3L_15085001 RAL-304_100b 2533 chr3L 15085040 15085080 chr3L 15086216 15086271 1360 27 1182 9.0 13.0 11.0 2.2 1231 chr3L 15085040 intron cp309 - chr3L 15085656 intron cp309 - chr3L 15086271 intron cp309 - chr3L_27_15085001 chr3L_15085001 RAL-304_100b 2534 chr3L 15094950 15094963 chr3L 15095067 15095082 9 119 24.0 12.0 18.0 0.5 132 chr3L 15094950 intergenic Aats-gly +,cp309 -,CG6945 - chr3L 15095016 intergenic Aats-gly +,cp309 -,CG6945 - chr3L 15095082 intergenic Aats-gly +,cp309 -,CG6945 - chr3L_9_15095001 chr3L_15095001 RAL-304_100b 2535 chr3L 15146147 15146171 chr3L 15146249 15146285 5 109 0.0 14.0 7.0 0.6 138 chr3L 15146147 3` UTR Pex3 + chr3L 15146216 3` UTR Pex3 + chr3L 15146285 3` UTR Pex3 + chr3L_5_15145001 chr3L_15145001 RAL-304_100b 2536 chr3L 15163631 15163651 chr3L 15163735 15163746 8 97 37.0 0.0 18.5 0.4 115 chr3L 15163631 intergenic CG7011 - chr3L 15163688 intergenic CG7011 - chr3L 15163746 intergenic CG7011 - chr3L_8_15160001 chr3L_15160001 RAL-304_100b 2537 chr3L 15168067 15168110 chr3L 15168260 15168275 31 195 9.0 20.0 14.5 2.0 208 chr3L 15168067 intergenic not near genes chr3L 15168171 intergenic not near genes chr3L 15168275 intergenic not near genes chr3L_31_15165001 chr3L_15165001 RAL-304_100b 2538 chr3L 15171540 15171593 chr3L 15171809 15171857 22 268 7.5 5.5 6.5 2.9 317 chr3L 15171540 intergenic not near genes chr3L 15171698 intergenic not near genes chr3L 15171857 intergenic not near genes chr3L_22_15170001 chr3L_15170001 RAL-304_100b 2539 chr3L 15174595 15174614 chr3L 15174723 15174737 22 126 12.5 35.0 23.8 0.9 142 chr3L 15174595 intergenic not near genes chr3L 15174666 intergenic not near genes chr3L 15174737 intergenic not near genes chr3L_22_15170001 chr3L_15170001 RAL-304_100b 2540 chr3L 15219723 15219774 chr3L 15219825 15219881 16 107 8.5 10.0 9.2 1.6 158 chr3L 15219723 intergenic not near genes chr3L 15219802 intergenic not near genes chr3L 15219881 intergenic not near genes chr3L_16_15215001 chr3L_15215001 RAL-304_100b 2541 chr3L 15257407 15257429 chr3L 15257645 15257665 13 237 11.0 4.0 7.5 1.5 258 chr3L 15257407 intergenic not near genes chr3L 15257536 intergenic not near genes chr3L 15257665 intergenic not near genes chr3L_13_15255001 chr3L_15255001 RAL-304_100b 2542 chr3L 15273146 15273173 chr3L 15273256 15273283 16 102 19.0 16.5 17.8 0.9 137 chr3L 15273146 intergenic not near genes chr3L 15273214 intergenic not near genes chr3L 15273283 intergenic not near genes chr3L_16_15270001 chr3L_15270001 RAL-304_100b 2543 chr3L 15273175 15273196 chr3L 15273255 15273306 19 105 7.5 16.5 12.0 1.5 131 chr3L 15273175 intergenic not near genes chr3L 15273240 intergenic not near genes chr3L 15273306 intergenic not near genes chr3L_19_15270001 chr3L_15270001 RAL-304_100b 2544 chr3L 15295749 15295798 chr3L 15298617 15298666 gypsy5 23 2866 10.5 14.0 12.2 1.7 2917 chr3L 15295749 intergenic not near genes chr3L 15297208 intergenic not near genes chr3L 15298666 intergenic Best4 + chr3L_23_15295001 chr3L_15295001 RAL-304_100b 2545 chr3L 15333122 15333168 chr3L 15333223 15333275 24 102 6.0 13.5 9.8 2.2 153 chr3L 15333122 intergenic CR43247 + chr3L 15333198 intergenic CR43247 + chr3L 15333275 intergenic CR43247 + chr3L_24_15330001 chr3L_15330001 RAL-304_100b 2546 chr3L 15347388 15347442 chr3L 15347489 15347536 34 97 10.5 14.0 12.2 2.6 148 chr3L 15347388 intergenic not near genes chr3L 15347462 intergenic not near genes chr3L 15347536 intergenic not near genes chr3L_34_15345001 chr3L_15345001 RAL-304_100b 2547 chr3L 15348084 15348143 chr3L 15348267 15348326 30 178 6.5 23.0 14.8 1.9 242 chr3L 15348084 intergenic not near genes chr3L 15348205 intergenic not near genes chr3L 15348326 intergenic not near genes chr3L_30_15345001 chr3L_15345001 RAL-304_100b 2548 chr3L 15384932 15384990 chr3L 15385085 15385143 59 145 17.5 12.0 14.8 3.7 211 chr3L 15384932 intergenic not near genes chr3L 15385038 intergenic not near genes chr3L 15385143 intergenic not near genes chr3L_59_15385001 chr3L_15385001 RAL-304_100b 2549 chr3L 15405994 15406052 chr3L 15406101 15406160 25 105 5.0 11.5 8.2 2.7 166 chr3L 15405994 intergenic not near genes chr3L 15406077 intergenic not near genes chr3L 15406160 intergenic not near genes chr3L_25_15405001 chr3L_15405001 RAL-304_100b 2550 chr3L 15423741 15423783 chr3L 15426610 15426652 opus 37 2868 16.0 11.0 13.5 2.6 2911 chr3L 15423741 intergenic not near genes chr3L 15425196 intergenic not near genes chr3L 15426652 intergenic not near genes chr3L_37_15425001 chr3L_15425001 RAL-304_100b 2551 chr3L 15443561 15443608 chr3L 15443662 15443710 12 99 7.5 6.5 7.0 1.5 149 chr3L 15443561 intergenic not near genes chr3L 15443636 intergenic not near genes chr3L 15443710 intergenic not near genes chr3L_12_15440001 chr3L_15440001 RAL-304_100b 2552 chr3L 15466012 15466139 chr3L 15466119 15466260 29 111 0.0 0.0 0.0 29.0 248 chr3L 15466012 intergenic not near genes chr3L 15466136 intergenic not near genes chr3L 15466260 intergenic not near genes chr3L_29_15465001 chr3L_15465001 RAL-304_100b 2553 chr3L 15466496 15466505 chr3L 15466605 15466614 6 109 23.5 9.5 16.5 0.3 118 chr3L 15466496 intergenic not near genes chr3L 15466555 intergenic not near genes chr3L 15466614 intergenic not near genes chr3L_6_15465001 chr3L_15465001 RAL-304_100b 2554 chr3L 15466507 15466547 chr3L 15466604 15466648 25 106 11.5 9.5 10.5 2.2 141 chr3L 15466507 intergenic not near genes chr3L 15466578 intergenic not near genes chr3L 15466648 intergenic not near genes chr3L_25_15465001 chr3L_15465001 RAL-304_100b 2555 chr3L 15472629 15472632 chr3L 15472731 15472734 4 102 61.0 43.5 52.2 0.1 105 chr3L 15472629 exon CG7804 - chr3L 15472682 exon CG7804 - chr3L 15472734 exon CG7804 - chr3L_4_15470001 chr3L_15470001 RAL-304_100b 2556 chr3L 15472633 15472638 chr3L 15472729 15472740 8 100 59.0 42.0 50.5 0.2 107 chr3L 15472633 exon CG7804 - chr3L 15472686 exon CG7804 - chr3L 15472740 exon CG7804 - chr3L_8_15470001 chr3L_15470001 RAL-304_100b 2557 chr3L 15472639 15472662 chr3L 15472728 15472729 31 94 48.0 41.0 44.5 0.7 90 chr3L 15472639 exon CG7804 - chr3L 15472684 exon CG7804 - chr3L 15472729 exon CG7804 - chr3L_31_15470001 chr3L_15470001 RAL-304_100b 2558 chr3L 15493289 15493347 chr3L 15493409 15493467 10 120 8.0 0.0 4.0 2.0 178 chr3L 15493289 exon CG12355 - chr3L 15493378 intron CG12355 - chr3L 15493467 intron CG12355 - chr3L_10_15490001 chr3L_15490001 RAL-304_100b 2559 chr3L 15541594 15541651 chr3L 15541710 15541767 32 115 15.5 9.0 12.2 2.4 173 chr3L 15541594 intron CrebA + chr3L 15541680 intron CrebA + chr3L 15541767 intron CrebA + chr3L_32_15540001 chr3L_15540001 RAL-304_100b 2560 chr3L 15541922 15541975 chr3L 15542041 15542094 31 116 5.0 7.5 6.2 4.3 172 chr3L 15541922 intron CrebA + chr3L 15542008 intron CrebA + chr3L 15542094 intron CrebA + chr3L_31_15540001 chr3L_15540001 RAL-304_100b 2561 chr3L 15633157 15633196 chr3L 15633262 15633285 26 101 9.0 4.5 6.8 3.3 128 chr3L 15633157 intron comm3 - chr3L 15633221 intron comm3 - chr3L 15633285 intron comm3 - chr3L_26_15630001 chr3L_15630001 RAL-304_100b 2562 chr3L 15633206 15633216 chr3L 15633295 15633321 4 99 2.5 9.5 6.0 0.6 115 chr3L 15633206 intron comm3 - chr3L 15633264 intron comm3 - chr3L 15633321 intron comm3 - chr3L_4_15630001 chr3L_15630001 RAL-304_100b 2563 chr3L 15695957 15696008 chr3L 15696055 15696111 35 101 12.0 13.5 12.8 2.5 154 chr3L 15695957 intergenic not near genes chr3L 15696034 intergenic not near genes chr3L 15696111 intergenic not near genes chr3L_35_15695001 chr3L_15695001 RAL-304_100b 2564 chr3L 15744582 15744623 chr3L 15745038 15745072 20 453 77.5 52.0 64.8 0.3 490 chr3L 15744582 intergenic not near genes chr3L 15744827 intergenic not near genes chr3L 15745072 intergenic not near genes chr3L_20_15740001 chr3L_15740001 RAL-304_100b 2565 chr3L 15769005 15769124 chr3L 15769115 15769240 5 115 0.0 0.0 0.0 5.0 235 chr3L 15769005 intergenic not near genes chr3L 15769122 intergenic not near genes chr3L 15769240 intergenic not near genes chr3L_5_15765001 chr3L_15765001 RAL-304_100b 2566 chr3L 15827262 15827317 chr3L 15827378 15827429 30 115 12.0 9.0 10.5 2.6 167 chr3L 15827262 intron dbo + chr3L 15827346 intron dbo + chr3L 15827429 intron dbo + chr3L_30_15825001 chr3L_15825001 RAL-304_100b 2567 chr3L 15840409 15840467 chr3L 15840522 15840577 13 111 7.0 8.0 7.5 1.5 168 chr3L 15840409 intron CG32150 - chr3L 15840493 intron CG32150 - chr3L 15840577 intron CG32150 - chr3L_13_15840001 chr3L_15840001 RAL-304_100b 2568 chr3L 15899208 15899209 chr3L 15899800 15899801 jockey 4 592 57.0 21.0 39.0 0.1 593 chr3L 15899208 intergenic pHCl - chr3L 15899504 intergenic pHCl - chr3L 15899801 intergenic sff - chr3L_4_15895001 chr3L_15895001 RAL-304_100b 2569 chr3L 15899218 15899221 chr3L 15899798 15899812 jockey 5 587 45.5 19.0 32.2 0.2 594 chr3L 15899218 intergenic pHCl - chr3L 15899515 intergenic pHCl - chr3L 15899812 intergenic sff - chr3L_5_15895001 chr3L_15895001 RAL-304_100b 2570 chr3L 15899222 15899222 chr3L 15899796 15899812 jockey 4 582 44.0 18.0 31.0 0.1 590 chr3L 15899222 intergenic pHCl - chr3L 15899517 intergenic pHCl - chr3L 15899812 intergenic sff - chr3L_4_15895001 chr3L_15895001 RAL-304_100b 2571 chr3L 15899229 15899262 chr3L 15899791 15899823 jockey 29 578 22.0 16.5 19.2 1.4 594 chr3L 15899229 intergenic pHCl - chr3L 15899526 intergenic pHCl - chr3L 15899823 intergenic sff - chr3L_29_15895001 chr3L_15895001 RAL-304_100b 2572 chr3L 15929129 15929176 chr3L 15938341 15938388 roo 36 9211 7.5 14.5 11.0 3.0 9259 chr3L 15929129 intron Pka-C3 - chr3L 15933758 intron Pka-C3 - chr3L 15938388 intron Pka-C3 - chr3L_36_15930001 chr3L_15930001 RAL-304_100b 2573 chr3L 15946530 15946536 chr3L 15946641 15946647 6 110 9.5 16.0 12.8 0.4 117 chr3L 15946530 intron Pka-C3 - chr3L 15946588 intron Pka-C3 - chr3L 15946647 intron Pka-C3 - chr3L_6_15945001 chr3L_15945001 RAL-304_100b 2574 chr3L 15989211 15989227 chr3L 15989319 15989326 22 107 16.0 21.0 18.5 1.1 115 chr3L 15989211 intron Hip14 + chr3L 15989268 intron Hip14 + chr3L 15989326 intron Hip14 + chr3L_22_15985001 chr3L_15985001 RAL-304_100b 2575 chr3L 16047725 16047763 chr3L 16047827 16047865 17 101 0.0 12.5 6.2 2.4 140 chr3L 16047725 intron th - chr3L 16047795 intron th - chr3L 16047865 intron th - chr3L_17_16045001 chr3L_16045001 RAL-304_100b 2576 chr3L 16126313 16126368 chr3L 16130722 16130777 75 4413 180.5 145.5 163.0 0.5 4464 chr3L 16126313 intron Pgm - chr3L 16128545 intergenic Pgm - chr3L 16130777 3` UTR SsRbeta + chr3L_75_16125001 chr3L_16125001 RAL-304_100b 2577 chr3L 16162585 16162590 chr3L 16162694 16162699 4 109 29.5 11.5 20.5 0.2 114 chr3L 16162585 intron CG5151 - chr3L 16162642 intron CG5151 - chr3L 16162699 intron CG5151 - chr3L_4_16160001 chr3L_16160001 RAL-304_100b 2578 chr3L 16162592 16162626 chr3L 16162686 16162734 23 107 10.0 10.0 10.0 2.1 142 chr3L 16162592 intron CG5151 - chr3L 16162663 intron CG5151 - chr3L 16162734 intron CG5151 - chr3L_23_16160001 chr3L_16160001 RAL-304_100b 2579 chr3L 16184088 16184136 chr3L 16188922 16188966 X-element 43 4842 14.5 17.0 15.8 2.6 4878 chr3L 16184088 intergenic not near genes chr3L 16186527 intergenic not near genes chr3L 16188966 intergenic not near genes chr3L_43_16185001 chr3L_16185001 RAL-304_100b 2580 chr3L 16194306 16194366 chr3L 16194421 16194481 73 105 13.5 17.0 15.2 4.5 175 chr3L 16194306 intergenic not near genes chr3L 16194394 intergenic not near genes chr3L 16194481 intergenic not near genes chr3L_73_16190001 chr3L_16190001 RAL-304_100b 2581 chr3L 16212790 16212820 chr3L 16212905 16212936 19 114 12.0 0.0 6.0 2.7 146 chr3L 16212790 intergenic CG13073 - chr3L 16212863 intergenic CG13073 - chr3L 16212936 intergenic CG13073 - chr3L_19_16210001 chr3L_16210001 RAL-304_100b 2582 chr3L 16212822 16212841 chr3L 16212903 16212904 9 103 7.5 0.0 3.8 1.9 82 chr3L 16212822 intergenic CG13073 - chr3L 16212863 intergenic CG13073 - chr3L 16212904 intergenic CG13073 - chr3L_9_16210001 chr3L_16210001 RAL-304_100b 2583 chr3L 16239912 16239948 chr3L 16240013 16240049 29 100 15.0 10.0 12.5 2.1 137 chr3L 16239912 intergenic l(3)72Dr + chr3L 16239980 intergenic not near genes chr3L 16240049 intergenic not near genes chr3L_29_16235001 chr3L_16235001 RAL-304_100b 2584 chr3L 16240769 16240773 chr3L 16240926 16240930 4 157 0.0 32.0 16.0 0.2 161 chr3L 16240769 intergenic not near genes chr3L 16240850 intergenic not near genes chr3L 16240930 intergenic not near genes chr3L_4_16240001 chr3L_16240001 RAL-304_100b 2585 chr3L 16240774 16240780 chr3L 16240921 16240927 10 155 0.0 30.0 15.0 0.6 153 chr3L 16240774 intergenic not near genes chr3L 16240850 intergenic not near genes chr3L 16240927 intergenic not near genes chr3L_10_16240001 chr3L_16240001 RAL-304_100b 2586 chr3L 16243644 16243679 chr3L 16243760 16243795 37 114 0.0 14.0 7.0 4.6 151 chr3L 16243644 intergenic not near genes chr3L 16243720 intergenic not near genes chr3L 16243795 intergenic not near genes chr3L_37_16240001 chr3L_16240001 RAL-304_100b 2587 chr3L 16258366 16258373 chr3L 16258477 16258484 4 110 39.5 8.5 24.0 0.2 118 chr3L 16258366 intergenic not near genes chr3L 16258425 intergenic not near genes chr3L 16258484 intergenic not near genes chr3L_4_16255001 chr3L_16255001 RAL-304_100b 2588 chr3L 16258375 16258420 chr3L 16258471 16258521 36 105 12.5 6.5 9.5 3.4 146 chr3L 16258375 intergenic not near genes chr3L 16258448 intergenic not near genes chr3L 16258521 intergenic not near genes chr3L_36_16255001 chr3L_16255001 RAL-304_100b 2589 chr3L 16279062 16279105 chr3L 16279168 16279211 37 105 21.0 14.0 17.5 2.0 149 chr3L 16279062 exon CG13050 - chr3L 16279136 intron CG13050 - chr3L 16279211 5` UTR CG13050 - chr3L_37_16275001 chr3L_16275001 RAL-304_100b 2590 chr3L 16325545 16325590 chr3L 16325665 16325703 37 112 30.5 17.0 23.8 1.5 158 chr3L 16325545 exon CG13040 - chr3L 16325624 exon CG13040 - chr3L 16325703 intron CG13040 - chr3L_37_16325001 chr3L_16325001 RAL-304_100b 2591 chr3L 16325591 16325601 chr3L 16325659 16325685 19 106 24.0 15.0 19.5 0.9 94 chr3L 16325591 exon CG13040 - chr3L 16325638 exon CG13040 - chr3L 16325685 exon CG13040 - chr3L_19_16325001 chr3L_16325001 RAL-304_100b 2592 chr3L 16359930 16360004 chr3L 16360225 16360270 9 288 0.0 9.5 4.8 1.6 340 chr3L 16359930 intron CG45057 - chr3L 16360100 intron CG45057 - chr3L 16360270 intron CG45057 - chr3L_9_16360001 chr3L_16360001 RAL-304_100b 2593 chr3L 16431809 16431858 chr3L 16431928 16431978 17 117 4.0 0.0 2.0 5.7 169 chr3L 16431809 intron,intron CG33158 +,dsx-c73A - chr3L 16431894 intron,intron CG33158 +,dsx-c73A - chr3L 16431978 intron,intron CG33158 +,dsx-c73A - chr3L_17_16430001 chr3L_16430001 RAL-304_100b 2594 chr3L 16437044 16437097 chr3L 16437148 16437206 40 109 16.5 0.5 8.5 4.2 162 chr3L 16437044 intron,intron CG33158 +,dsx-c73A - chr3L 16437125 intron,intron CG33158 +,dsx-c73A - chr3L 16437206 intron,intron CG33158 +,dsx-c73A - chr3L_40_16435001 chr3L_16435001 RAL-304_100b 2595 chr3L 16443821 16443877 chr3L 16446187 16446225 Doc 28 2361 11.0 10.5 10.8 2.4 2404 chr3L 16443821 intron,intron CG33158 +,dsx-c73A - chr3L 16445023 intron,intron CG33158 +,dsx-c73A - chr3L 16446225 intron,intron CG33158 +,dsx-c73A - chr3L_28_16445001 chr3L_16445001 RAL-304_100b 2596 chr3L 16493950 16493967 chr3L 16494492 16494509 jockey 13 541 52.5 13.5 33.0 0.4 559 chr3L 16493950 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494230 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494509 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_13_16490001 chr3L_16490001 RAL-304_100b 2597 chr3L 16493970 16494012 chr3L 16494491 16494553 jockey 22 532 19.5 13.0 16.2 1.3 583 chr3L 16493970 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494262 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494553 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_22_16490001 chr3L_16490001 RAL-304_100b 2598 chr3L 16509368 16509425 chr3L 16509544 16509601 47 175 9.5 14.5 12.0 3.6 233 chr3L 16509368 intron CG43373 - chr3L 16509484 intron CG43373 - chr3L 16509601 intron CG43373 - chr3L_47_16505001 chr3L_16505001 RAL-304_100b 2599 chr3L 16515308 16515337 chr3L 16515417 16515446 30 108 13.5 9.0 11.2 2.5 138 chr3L 16515308 intron CG43373 - chr3L 16515377 intron CG43373 - chr3L 16515446 intron CG43373 - chr3L_30_16515001 chr3L_16515001 RAL-304_100b 2600 chr3L 16550037 16550084 chr3L 16550178 16550234 45 143 10.5 15.0 12.8 3.3 197 chr3L 16550037 intergenic not near genes chr3L 16550136 intergenic not near genes chr3L 16550234 intergenic not near genes chr3L_45_16550001 chr3L_16550001 RAL-304_100b 2601 chr3L 16555880 16555929 chr3L 16556013 16556046 31 129 17.5 11.5 14.5 2.0 166 chr3L 16555880 intergenic not near genes chr3L 16555963 intergenic not near genes chr3L 16556046 intergenic not near genes chr3L_31_16555001 chr3L_16555001 RAL-304_100b 2602 chr3L 16558180 16558195 chr3L 16558311 16558326 11 131 8.0 17.5 12.8 0.8 146 chr3L 16558180 intergenic CG4229 + chr3L 16558253 intergenic CG4229 + chr3L 16558326 intergenic CG4229 + chr3L_11_16555001 chr3L_16555001 RAL-304_100b 2603 chr3L 16616487 16616541 chr3L 16621840 16621853 297 42 5347 8.5 11.5 10.0 3.8 5366 chr3L 16616487 3` UTR Abl - chr3L 16619170 3` UTR Abl - chr3L 16621853 3` UTR Abl - chr3L_42_16615001 chr3L_16615001 RAL-304_100b 2604 chr3L 16684002 16684046 chr3L 16689248 16689284 copia 21 5244 5.5 15.0 10.2 1.9 5282 chr3L 16684002 intron,intron Lasp -,CG43954 - chr3L 16686643 intron,intron Lasp -,CG43954 - chr3L 16689284 intron,intron,5` UTR Lasp -,CG43954 -,CR45179 + chr3L_21_16685001 chr3L_16685001 RAL-304_100b 2605 chr3L 16708506 16708549 chr3L 16708634 16708679 33 135 8.5 6.5 7.5 3.9 173 chr3L 16708506 intron,intron Lasp -,CG43954 - chr3L 16708592 intron,intron Lasp -,CG43954 - chr3L 16708679 intron,intron Lasp -,CG43954 - chr3L_33_16705001 chr3L_16705001 RAL-304_100b 2606 chr3L 4236112 4236122 chr3L 16725552 16725554 4 12489437 66.0 31.5 48.8 0.1 12489442 chr3L 4236112 5` UTR ImpL2 - chr3L 10480833 intergenic not near genes chr3L 16725554 3` UTR CG13026 - chr3L_4_10480001 chr3L_10480001 RAL-304_100b 2607 chr3L 16749178 16749237 chr3L 16749279 16749303 30 96 13.0 11.5 12.2 2.3 125 chr3L 16749178 intergenic not near genes chr3L 16749240 intergenic not near genes chr3L 16749303 intergenic not near genes chr3L_30_16745001 chr3L_16745001 RAL-304_100b 2608 chr3L 16825344 16825347 chr3L 16825448 16825451 4 104 0.0 11.5 5.8 0.6 107 chr3L 16825344 intron CG13024 - chr3L 16825398 intron CG13024 - chr3L 16825451 intron CG13024 - chr3L_4_16825001 chr3L_16825001 RAL-304_100b 2609 chr3L 16838978 16839031 chr3L 16839207 16839265 35 231 8.0 12.5 10.2 3.1 287 chr3L 16838978 intergenic not near genes chr3L 16839122 intergenic not near genes chr3L 16839265 intergenic not near genes chr3L_35_16835001 chr3L_16835001 RAL-304_100b 2610 chr3L 16845005 16845015 chr3L 16845143 16845153 4 138 32.5 22.0 27.2 0.1 148 chr3L 16845005 intergenic CG9669 -,CG9715 +,TSG101 + chr3L 16845079 intergenic CG9669 -,CG9715 +,TSG101 + chr3L 16845153 intergenic CG9669 -,CG9715 + chr3L_4_16845001 chr3L_16845001 RAL-304_100b 2611 chr3L 16845018 16845033 chr3L 16845141 16845171 8 130 24.0 19.5 21.8 0.4 153 chr3L 16845018 intergenic CG9669 -,CG9715 +,TSG101 + chr3L 16845094 intergenic CG9669 -,CG9715 + chr3L 16845171 intergenic CG9669 -,CG9715 + chr3L_8_16845001 chr3L_16845001 RAL-304_100b 2612 chr3L 16845036 16845045 chr3L 16845134 16845183 7 132 15.5 16.0 15.8 0.4 147 chr3L 16845036 intergenic CG9669 -,CG9715 +,TSG101 + chr3L 16845110 intergenic CG9669 -,CG9715 + chr3L 16845183 intergenic CG9669 -,CG9715 + chr3L_7_16845001 chr3L_16845001 RAL-304_100b 2613 chr3L 16873317 16873359 chr3L 16873447 16873488 33 128 19.5 27.5 23.5 1.3 171 chr3L 16873317 intron Lmpt + chr3L 16873402 intron Lmpt + chr3L 16873488 intron Lmpt + chr3L_33_16870001 chr3L_16870001 RAL-304_100b 2614 chr3L 16874516 16874545 chr3L 16874702 16874731 24 186 16.5 13.5 15.0 1.5 215 chr3L 16874516 intron Lmpt + chr3L 16874624 intron Lmpt + chr3L 16874731 intron Lmpt + chr3L_24_16870001 chr3L_16870001 RAL-304_100b 2615 chr3L 16874546 16874573 chr3L 16874701 16874759 22 183 5.5 13.5 9.5 2.1 213 chr3L 16874546 intron Lmpt + chr3L 16874652 intron Lmpt + chr3L 16874759 intron Lmpt + chr3L_22_16870001 chr3L_16870001 RAL-304_100b 2616 chr3L 16882271 16882308 chr3L 16882378 16882421 12 109 15.5 2.0 8.8 1.2 150 chr3L 16882271 intron Lmpt + chr3L 16882346 intron Lmpt + chr3L 16882421 intron Lmpt + chr3L_12_16880001 chr3L_16880001 RAL-304_100b 2617 chr3L 16922635 16922642 chr3L 16922854 16922861 4 219 8.0 28.0 18.0 0.2 226 chr3L 16922635 intergenic Lmpt + chr3L 16922748 intergenic Lmpt + chr3L 16922861 intergenic Lmpt +,CG13028 + chr3L_4_16920001 chr3L_16920001 RAL-304_100b 2618 chr3L 16945705 16945718 chr3L 16954883 16954896 roo 15 9176 50.5 16.0 33.2 0.4 9191 chr3L 16945705 exon Obp73a + chr3L 16950300 intergenic not near genes chr3L 16954896 5` UTR Nc73EF + chr3L_15_16950001 chr3L_16950001 RAL-304_100b 2619 chr3L 16945720 16945734 chr3L 16954880 16954906 roo 14 9170 36.0 14.5 25.2 0.5 9186 chr3L 16945720 exon Obp73a + chr3L 16950313 intergenic not near genes chr3L 16954906 5` UTR Nc73EF + chr3L_14_16950001 chr3L_16950001 RAL-304_100b 2620 chr3L 16945735 16945761 chr3L 16954878 16954913 roo 28 9162 22.5 14.5 18.5 1.4 9178 chr3L 16945735 exon Obp73a + chr3L 16950324 intergenic not near genes chr3L 16954913 5` UTR Nc73EF + chr3L_28_16950001 chr3L_16950001 RAL-304_100b 2621 chr3L 16972031 16972073 chr3L 16972132 16972173 21 98 14.5 4.0 9.2 2.1 142 chr3L 16972031 intron Exn + chr3L 16972102 intron Exn + chr3L 16972173 intron Exn + chr3L_21_16970001 chr3L_16970001 RAL-304_100b 2622 chr3L 17008416 17008467 chr3L 17008523 17008553 30 102 5.5 17.0 11.2 2.5 137 chr3L 17008416 intron CG3764 - chr3L 17008484 intron CG3764 - chr3L 17008553 intron CG3764 - chr3L_30_17005001 chr3L_17005001 RAL-304_100b 2623 chr3L 17034913 17034957 chr3L 17035126 17035170 G2 18 213 7.5 7.0 7.2 2.2 257 chr3L 17034913 intergenic not near genes chr3L 17035042 intergenic not near genes chr3L 17035170 intergenic beg + chr3L_18_17035001 chr3L_17035001 RAL-304_100b 2624 chr3L 17084980 17085033 chr3L 17094154 17094207 roo 31 9173 15.0 16.5 15.8 1.8 9227 chr3L 17084980 intron Rbp6 - chr3L 17089594 intron Rbp6 - chr3L 17094207 intron Rbp6 - chr3L_31_17085001 chr3L_17085001 RAL-304_100b 2625 chr3L 17103102 17103132 chr3L 17103204 17103220 19 97 31.5 23.0 27.2 0.7 118 chr3L 17103102 intron Rbp6 - chr3L 17103161 intron Rbp6 - chr3L 17103220 intron Rbp6 - chr3L_19_17100001 chr3L_17100001 RAL-304_100b 2626 chr3L 17120627 17120683 chr3L 17120728 17120784 53 99 10.0 9.5 9.8 4.9 157 chr3L 17120627 intron Rbp6 - chr3L 17120706 intron Rbp6 - chr3L 17120784 intron Rbp6 - chr3L_53_17120001 chr3L_17120001 RAL-304_100b 2627 chr3L 17142713 17142721 chr3L 17142961 17142974 8 252 35.0 19.5 27.2 0.3 261 chr3L 17142713 intron Rbp6 - chr3L 17142844 intron Rbp6 - chr3L 17142974 intron Rbp6 - chr3L_8_17140001 chr3L_17140001 RAL-304_100b 2628 chr3L 17142723 17142760 chr3L 17142959 17142995 38 246 14.5 18.0 16.2 2.2 272 chr3L 17142723 intron Rbp6 - chr3L 17142859 intron Rbp6 - chr3L 17142995 intron Rbp6 - chr3L_38_17140001 chr3L_17140001 RAL-304_100b 2629 chr3L 17146931 17146939 chr3L 17147038 17147046 6 107 23.5 14.5 19.0 0.3 115 chr3L 17146931 intron Rbp6 - chr3L 17146988 intron Rbp6 - chr3L 17147046 intron Rbp6 - chr3L_6_17145001 chr3L_17145001 RAL-304_100b 2630 chr3L 17146940 17146967 chr3L 17147037 17147074 27 101 15.0 14.5 14.8 1.7 134 chr3L 17146940 intron Rbp6 - chr3L 17147007 intron Rbp6 - chr3L 17147074 intron Rbp6 - chr3L_27_17145001 chr3L_17145001 RAL-304_100b 2631 chr3L 17146968 17146987 chr3L 17147035 17147064 21 98 8.0 13.5 10.8 1.8 96 chr3L 17146968 intron Rbp6 - chr3L 17147016 intron Rbp6 - chr3L 17147064 intron Rbp6 - chr3L_21_17145001 chr3L_17145001 RAL-304_100b 2632 chr3L 17149139 17149193 chr3L 17149245 17149264 15 102 12.5 0.0 6.2 2.1 125 chr3L 17149139 intron Rbp6 - chr3L 17149202 intron Rbp6 - chr3L 17149264 intron Rbp6 - chr3L_15_17145001 chr3L_17145001 RAL-304_100b 2633 chr3L 17194440 17194444 chr3L 17194550 17194555 4 111 10.5 32.5 21.5 0.2 115 chr3L 17194440 intron Rbp6 - chr3L 17194498 intron Rbp6 - chr3L 17194555 intron Rbp6 - chr3L_4_17190001 chr3L_17190001 RAL-304_100b 2634 chr3L 17217227 17217282 chr3L 17217332 17217387 27 104 8.5 9.0 8.8 2.8 160 chr3L 17217227 intron Rbp6 - chr3L 17217307 intron Rbp6 - chr3L 17217387 intron Rbp6 - chr3L_27_17215001 chr3L_17215001 RAL-304_100b 2635 chr3L 17309053 17309062 chr3L 17309160 17309170 4 106 36.0 19.0 27.5 0.1 117 chr3L 17309053 intergenic not near genes chr3L 17309112 intergenic not near genes chr3L 17309170 intergenic not near genes chr3L_4_17305001 chr3L_17305001 RAL-304_100b 2636 chr3L 17309063 17309069 chr3L 17309157 17309169 9 97 33.5 17.0 25.2 0.3 106 chr3L 17309063 intergenic not near genes chr3L 17309116 intergenic not near genes chr3L 17309169 intergenic not near genes chr3L_9_17305001 chr3L_17305001 RAL-304_100b 2637 chr3L 17309070 17309105 chr3L 17309154 17309192 41 99 14.0 14.5 14.2 2.7 122 chr3L 17309070 intergenic not near genes chr3L 17309131 intergenic not near genes chr3L 17309192 intergenic not near genes chr3L_41_17305001 chr3L_17305001 RAL-304_100b 2638 chr3L 17367412 17367457 chr3L 17367531 17367576 34 119 10.0 10.0 10.0 3.1 164 chr3L 17367412 intergenic CR45688 +,Cad74A - chr3L 17367494 intergenic CR45688 +,Cad74A - chr3L 17367576 intergenic Cad74A -,CR45688 + chr3L_34_17365001 chr3L_17365001 RAL-304_100b 2639 chr3L 17498077 17498114 chr3L 17498179 17498216 13 101 20.0 8.0 14.0 0.9 139 chr3L 17498077 intron Oatp74D + chr3L 17498146 intron Oatp74D + chr3L 17498216 intron Oatp74D + chr3L_13_17495001 chr3L_17495001 RAL-304_100b 2640 chr3L 17516954 17517008 chr3L 17524537 17524590 412 49 7578 19.0 15.5 17.2 2.7 7636 chr3L 17516954 intron CG7564 + chr3L 17520772 intron CG7564 + chr3L 17524590 3` UTR CG7564 + chr3L_49_17520001 chr3L_17520001 RAL-304_100b 2641 chr3L 17659702 17659709 chr3L 17659804 17659809 6 102 29.5 9.5 19.5 0.3 107 chr3L 17659702 intergenic Crtc - chr3L 17659756 intergenic Crtc - chr3L 17659809 intergenic Crtc - chr3L_6_17655001 chr3L_17655001 RAL-304_100b 2642 chr3L 17659710 17659754 chr3L 17659802 17659840 26 100 11.5 9.0 10.2 2.3 130 chr3L 17659710 intergenic Crtc - chr3L 17659775 intergenic Crtc - chr3L 17659840 3` UTR Crtc - chr3L_26_17655001 chr3L_17655001 RAL-304_100b 2643 chr3L 17701158 17701177 chr3L 17701264 17701283 18 105 21.0 20.5 20.8 0.8 125 chr3L 17701158 intron Ccn + chr3L 17701220 intron Ccn + chr3L 17701283 intron Ccn + chr3L_18_17700001 chr3L_17700001 RAL-304_100b 2644 chr3L 17730830 17730878 chr3L 17738180 17738233 mdg1 34 7353 6.5 13.5 10.0 3.1 7403 chr3L 17730830 intron Ccn + chr3L 17734532 intron Ccn + chr3L 17738233 intron Ccn + chr3L_34_17730001 chr3L_17730001 RAL-304_100b 2645 chr3L 17753328 17753358 chr3L 17753438 17753469 32 109 13.0 17.0 15.0 2.0 141 chr3L 17753328 intron Adgf-A - chr3L 17753398 intron Adgf-A - chr3L 17753469 exon Adgf-A - chr3L_32_17750001 chr3L_17750001 RAL-304_100b 2646 chr3L 17789821 17789877 chr3L 17789922 17789978 39 100 10.0 8.5 9.2 3.8 157 chr3L 17789821 intergenic not near genes chr3L 17789900 intergenic not near genes chr3L 17789978 intergenic not near genes chr3L_39_17785001 chr3L_17785001 RAL-304_100b 2647 chr3L 17790594 17790635 chr3L 17790884 17790887 34 286 18.5 17.0 17.8 1.8 293 chr3L 17790594 intergenic CG42815 - chr3L 17790740 intergenic CG42815 - chr3L 17790887 intergenic CG42815 - chr3L_34_17790001 chr3L_17790001 RAL-304_100b 2648 chr3L 17799791 17799807 chr3L 17801603 17801618 S-element 6 1812 14.5 8.5 11.5 0.5 1827 chr3L 17799791 intron NUCB1 - chr3L 17800704 intron NUCB1 - chr3L 17801618 intron NUCB1 - chr3L_6_17800001 chr3L_17800001 RAL-304_100b 2649 chr3L 17799808 17799841 chr3L 17801596 17801653 S-element 17 1809 7.0 6.0 6.5 2.3 1845 chr3L 17799808 intron NUCB1 - chr3L 17800730 intron NUCB1 - chr3L 17801653 intron NUCB1 - chr3L_17_17800001 chr3L_17800001 RAL-304_100b 2650 chr3L 17884672 17884695 chr3L 17884797 17884820 12 123 6.5 3.0 4.8 2.1 148 chr3L 17884672 intergenic CG5506 - chr3L 17884746 intergenic CG5506 - chr3L 17884820 intergenic CG5506 - chr3L_12_17880001 chr3L_17880001 RAL-304_100b 2651 chr3L 17887854 17887878 chr3L 17887964 17887973 6 108 5.5 9.0 7.2 0.7 119 chr3L 17887854 intron CG7402 + chr3L 17887914 intron CG7402 + chr3L 17887973 intron CG7402 + chr3L_6_17885001 chr3L_17885001 RAL-304_100b 2652 chr3L 17918352 17918404 chr3L 17921175 17921208 opus 35 2821 19.5 11.0 15.2 2.2 2856 chr3L 17918352 intergenic not near genes chr3L 17919780 intergenic not near genes chr3L 17921208 intergenic not near genes chr3L_35_17915001 chr3L_17915001 RAL-304_100b 2653 chr3L 17991554 17991589 chr3L 17991657 17991692 18 103 13.5 15.0 14.2 1.2 138 chr3L 17991554 intron Eip75B - chr3L 17991623 intron Eip75B - chr3L 17991692 intron Eip75B - chr3L_18_17990001 chr3L_17990001 RAL-304_100b 2654 chr3L 18006195 18006255 chr3L 18006344 18006398 52 145 6.5 10.5 8.5 5.5 203 chr3L 18006195 intron Eip75B - chr3L 18006296 intron Eip75B - chr3L 18006398 intron Eip75B - chr3L_52_18005001 chr3L_18005001 RAL-304_100b 2655 chr3L 18013948 18013958 chr3L 18014062 18014072 7 114 20.0 0.0 10.0 0.6 124 chr3L 18013948 intron Eip75B - chr3L 18014010 intron Eip75B - chr3L 18014072 intron Eip75B - chr3L_7_18010001 chr3L_18010001 RAL-304_100b 2656 chr3L 18029936 18029968 chr3L 18030038 18030055 7 100 4.5 0.5 2.5 2.0 119 chr3L 18029936 intron Eip75B - chr3L 18029996 intron Eip75B - chr3L 18030055 intron Eip75B - chr3L_7_18025001 chr3L_18025001 RAL-304_100b 2657 chr3L 18034699 18034700 chr3L 18034792 18034808 4 100 21.5 38.5 30.0 0.1 109 chr3L 18034699 intron Eip75B - chr3L 18034754 intron Eip75B - chr3L 18034808 intron Eip75B - chr3L_4_18030001 chr3L_18030001 RAL-304_100b 2658 chr3L 18034701 18034707 chr3L 18034788 18034810 5 98 16.5 36.5 26.5 0.2 109 chr3L 18034701 intron Eip75B - chr3L 18034756 intron Eip75B - chr3L 18034810 intron Eip75B - chr3L_5_18030001 chr3L_18030001 RAL-304_100b 2659 chr3L 18047681 18047738 chr3L 18056762 18056820 roo 24 9080 8.0 6.5 7.2 2.9 9139 chr3L 18047681 intron Eip75B - chr3L 18052250 intron Eip75B - chr3L 18056820 intron Eip75B - chr3L_24_18050001 chr3L_18050001 RAL-304_100b 2660 chr3L 18064036 18064077 chr3L 18064147 18064183 16 106 6.0 4.5 5.2 2.6 147 chr3L 18064036 intron Eip75B - chr3L 18064110 intron Eip75B - chr3L 18064183 intron Eip75B - chr3L_16_18060001 chr3L_18060001 RAL-304_100b 2661 chr3L 18077130 18077157 chr3L 18077250 18077277 15 119 6.5 8.0 7.2 1.8 147 chr3L 18077130 intergenic CR45392 + chr3L 18077204 intergenic CR45392 + chr3L 18077277 intergenic CR45392 + chr3L_15_18075001 chr3L_18075001 RAL-304_100b 2662 chr3L 18092137 18092141 chr3L 18092220 18092245 5 98 0.0 13.0 6.5 0.7 108 chr3L 18092137 intron CG13698 - chr3L 18092191 intron CG13698 - chr3L 18092245 intron CG13698 - chr3L_5_18090001 chr3L_18090001 RAL-304_100b 2663 chr3L 18106228 18106238 chr3L 18106372 18106382 9 144 28.5 0.5 14.5 0.6 154 chr3L 18106228 intergenic CG13698 -,mRpS26 + chr3L 18106305 intergenic CG13698 -,mRpS26 + chr3L 18106382 intergenic mRpS26 +,CG13698 - chr3L_9_18105001 chr3L_18105001 RAL-304_100b 2664 chr3L 18106240 18106285 chr3L 18106369 18106410 21 140 4.0 0.5 2.2 6.6 170 chr3L 18106240 intergenic CG13698 -,mRpS26 + chr3L 18106325 intergenic CG13698 -,mRpS26 + chr3L 18106410 intergenic mRpS26 +,CG13698 - chr3L_21_18105001 chr3L_18105001 RAL-304_100b 2665 chr3L 18124400 18124430 chr3L 18124509 18124539 10 108 8.5 14.0 11.2 0.8 139 chr3L 18124400 intergenic not near genes chr3L 18124470 intergenic not near genes chr3L 18124539 intergenic not near genes chr3L_10_18120001 chr3L_18120001 RAL-304_100b 2666 chr3L 18150291 18150344 chr3L 18150413 18150456 24 119 6.5 9.0 7.8 2.7 165 chr3L 18150291 intron CG7330 + chr3L 18150374 intron CG7330 + chr3L 18150456 intron CG7330 + chr3L_24_18150001 chr3L_18150001 RAL-304_100b 2667 chr3L 18172667 18172704 chr3L 18172768 18172805 24 101 20.0 14.0 17.0 1.3 138 chr3L 18172667 intron W - chr3L 18172736 intron W - chr3L 18172805 intron W - chr3L_24_18170001 chr3L_18170001 RAL-304_100b 2668 chr3L 18186609 18186619 chr3L 18186770 18186783 7 162 13.5 5.0 9.2 0.7 174 chr3L 18186609 intergenic not near genes chr3L 18186696 intergenic not near genes chr3L 18186783 intergenic not near genes chr3L_7_18185001 chr3L_18185001 RAL-304_100b 2669 chr3L 18189564 18189585 chr3L 18190190 18190211 S-element 14 625 29.0 15.0 22.0 0.6 647 chr3L 18189564 intergenic not near genes chr3L 18189888 intergenic not near genes chr3L 18190211 intergenic not near genes chr3L_14_18185001 chr3L_18185001 RAL-304_100b 2670 chr3L 18198929 18198931 chr3L 24821492 24821494 33 6622563 0.0 46.5 23.2 1.4 6622565 chr3L 18198929 intergenic not near genes chr3L 21510212 intron M6 + chr3L 24821494 intergenic not near genes chr3L_33_21510001 chr3L_21510001 RAL-304_100b 2671 chr3L 18210717 18210750 chr3L 18210818 18210851 26 99 11.5 9.5 10.5 2.3 134 chr3L 18210717 intergenic not near genes chr3L 18210784 intergenic not near genes chr3L 18210851 intergenic not near genes chr3L_26_18210001 chr3L_18210001 RAL-304_100b 2672 chr3L 18213991 18214012 chr3L 18214118 18214161 16 146 2.5 15.0 8.8 1.6 170 chr3L 18213991 intergenic not near genes chr3L 18214076 intergenic not near genes chr3L 18214161 intergenic not near genes chr3L_16_18210001 chr3L_18210001 RAL-304_100b 2673 chr3L 18220215 18220223 chr3L 18220635 18220643 5 420 15.5 7.0 11.2 0.4 428 chr3L 18220215 intergenic not near genes chr3L 18220429 intergenic not near genes chr3L 18220643 intergenic not near genes chr3L_5_18220001 chr3L_18220001 RAL-304_100b 2674 chr3L 18223139 18223187 chr3L 18223246 18223297 31 107 11.5 0.0 5.8 4.6 158 chr3L 18223139 intergenic not near genes chr3L 18223218 intergenic not near genes chr3L 18223297 intergenic not near genes chr3L_31_18220001 chr3L_18220001 RAL-304_100b 2675 chr3L 18226660 18226668 chr3L 18226770 18226784 7 115 6.5 10.5 8.5 0.7 124 chr3L 18226660 intergenic not near genes chr3L 18226722 intergenic not near genes chr3L 18226784 intergenic not near genes chr3L_7_18225001 chr3L_18225001 RAL-304_100b 2676 chr3L 18248933 18248946 chr3L 18249055 18249069 8 122 28.5 21.0 24.8 0.3 136 chr3L 18248933 intergenic not near genes chr3L 18249001 intergenic not near genes chr3L 18249069 intergenic not near genes chr3L_8_18245001 chr3L_18245001 RAL-304_100b 2677 chr3L 18248947 18248980 chr3L 18249049 18249103 34 120 10.5 19.5 15.0 2.1 156 chr3L 18248947 intergenic not near genes chr3L 18249025 intergenic not near genes chr3L 18249103 intergenic not near genes chr3L_34_18245001 chr3L_18245001 RAL-304_100b 2678 chr3L 18262446 18262489 chr3L 18262554 18262597 25 107 8.0 5.0 6.5 3.3 151 chr3L 18262446 intergenic not near genes chr3L 18262522 intergenic not near genes chr3L 18262597 intergenic not near genes chr3L_25_18260001 chr3L_18260001 RAL-304_100b 2679 chr3L 18276066 18276107 chr3L 18276186 18276209 19 117 7.5 15.0 11.2 1.6 143 chr3L 18276066 intergenic not near genes chr3L 18276138 intergenic not near genes chr3L 18276209 intergenic not near genes chr3L_19_18275001 chr3L_18275001 RAL-304_100b 2680 chr3L 18329343 18329398 chr3L 18329455 18329495 47 108 17.0 9.0 13.0 3.4 152 chr3L 18329343 intergenic not near genes chr3L 18329419 intergenic not near genes chr3L 18329495 intergenic not near genes chr3L_47_18325001 chr3L_18325001 RAL-304_100b 2681 chr3L 18342052 18342101 chr3L 18342157 18342191 19 102 4.5 13.0 8.8 1.9 139 chr3L 18342052 intergenic not near genes chr3L 18342122 intergenic not near genes chr3L 18342191 intergenic not near genes chr3L_19_18340001 chr3L_18340001 RAL-304_100b 2682 chr3L 18383076 18383131 chr3L 18383185 18383238 18 107 7.5 6.5 7.0 2.2 162 chr3L 18383076 intergenic not near genes chr3L 18383157 intergenic not near genes chr3L 18383238 intergenic not near genes chr3L_18_18380001 chr3L_18380001 RAL-304_100b 2683 chr3L 18386872 18386881 chr3L 18386977 18386986 6 105 0.0 12.0 6.0 0.9 114 chr3L 18386872 intergenic not near genes chr3L 18386929 intergenic not near genes chr3L 18386986 intergenic not near genes chr3L_6_18385001 chr3L_18385001 RAL-304_100b 2684 chr3L 9013689 9013697 chr3L 18417066 18417066 24 9403374 108.5 80.5 94.5 0.3 9403377 chr3L 9013689 intron Doc2 - chr3L 13715378 intron bru-3 - chr3L 18417066 intergenic not near genes chr3L_24_13715001 chr3L_13715001 RAL-304_100b 2685 chr3L 9307795 9307796 chr3L 18417066 18417066 5 9109271 52.5 80.5 66.5 0.1 9109271 chr3L 9307795 intergenic not near genes chr3L 13862430 intron CG8745 - chr3L 18417066 intergenic not near genes chr3L_5_13860001 chr3L_13860001 RAL-304_100b 2686 chr3L 18417066 18417066 chr3L 19220633 19220637 9 803570 82.5 61.0 71.8 0.1 803571 chr3L 18417066 intergenic not near genes chr3L 18818852 intron CG14073 - chr3L 19220637 intron fz2 - chr3L_9_18815001 chr3L_18815001 RAL-304_100b 2687 chr3L 18436042 18436090 chr3L 18436164 18436213 27 122 9.0 12.5 10.8 2.3 171 chr3L 18436042 intergenic not near genes chr3L 18436128 intergenic not near genes chr3L 18436213 intergenic not near genes chr3L_27_18435001 chr3L_18435001 RAL-304_100b 2688 chr3L 18448603 18448617 chr3L 18448717 18448734 7 116 21.0 12.5 16.8 0.4 131 chr3L 18448603 intergenic not near genes chr3L 18448668 intergenic not near genes chr3L 18448734 intergenic not near genes chr3L_7_18445001 chr3L_18445001 RAL-304_100b 2689 chr3L 18506116 18506160 chr3L 18509604 18509648 F-element 23 3484 10.5 10.0 10.2 2.1 3532 chr3L 18506116 intergenic not near genes chr3L 18507882 intergenic not near genes chr3L 18509648 intergenic not near genes chr3L_23_18505001 chr3L_18505001 RAL-304_100b 2690 chr3L 18514884 18514894 chr3L 18520100 18520110 BS 6 5216 19.0 12.5 15.8 0.4 5226 chr3L 18514884 intergenic not near genes chr3L 18517497 intergenic not near genes chr3L 18520110 intergenic not near genes chr3L_6_18515001 chr3L_18515001 RAL-304_100b 2691 chr3L 18514895 18514934 chr3L 18520099 18520150 BS 31 5214 10.5 11.5 11.0 2.6 5255 chr3L 18514895 intergenic not near genes chr3L 18517522 intergenic not near genes chr3L 18520150 intergenic not near genes chr3L_31_18515001 chr3L_18515001 RAL-304_100b 2692 chr3L 18528600 18528657 chr3L 18537786 18537843 roo 23 9186 8.5 5.5 7.0 2.9 9243 chr3L 18528600 intergenic not near genes chr3L 18533222 intergenic not near genes chr3L 18537843 intergenic not near genes chr3L_23_18530001 chr3L_18530001 RAL-304_100b 2693 chr3L 18556310 18556363 chr3L 18556436 18556490 80 119 21.5 11.0 16.2 4.7 180 chr3L 18556310 intergenic not near genes chr3L 18556400 intergenic not near genes chr3L 18556490 intergenic not near genes chr3L_80_18555001 chr3L_18555001 RAL-304_100b 2694 chr3L 18571725 18571779 chr3L 18572075 18572114 24 344 11.0 8.0 9.5 2.3 389 chr3L 18571725 intron AstC-R1 + chr3L 18571920 intron AstC-R1 + chr3L 18572114 intron AstC-R1 + chr3L_24_18570001 chr3L_18570001 RAL-304_100b 2695 chr3L 18593931 18593960 chr3L 18595936 18595965 Doc 17 2004 15.0 7.0 11.0 1.4 2034 chr3L 18593931 intergenic term - chr3L 18594948 intergenic not near genes chr3L 18595965 intergenic CR45389 + chr3L_17_18590001 chr3L_18590001 RAL-304_100b 2696 chr3L 18607857 18607863 chr3L 18607977 18607983 8 120 12.5 11.0 11.8 0.6 126 chr3L 18607857 intron,intron,exon CG13380 -,CG4174 -,CG18231 + chr3L 18607920 intron,intron,intron CG13380 -,CG4174 -,CG18231 + chr3L 18607983 intron,intron,intron CG13380 -,CG4174 -,CG18231 + chr3L_8_18605001 chr3L_18605001 RAL-304_100b 2697 chr3L 18638563 18638607 chr3L 18638682 18638726 28 116 8.5 14.5 11.5 2.2 163 chr3L 18638563 intron MYPT-75D + chr3L 18638644 intron MYPT-75D + chr3L 18638726 intron MYPT-75D + chr3L_28_18635001 chr3L_18635001 RAL-304_100b 2698 chr3L 18688141 18688150 chr3L 18688267 18688276 4 126 41.5 42.5 42.0 0.1 135 chr3L 18688141 intergenic not near genes chr3L 18688208 intergenic not near genes chr3L 18688276 intergenic not near genes chr3L_4_18685001 chr3L_18685001 RAL-304_100b 2699 chr3L 18688151 18688160 chr3L 18688266 18688281 12 122 34.5 42.0 38.2 0.3 130 chr3L 18688151 intergenic not near genes chr3L 18688216 intergenic not near genes chr3L 18688281 intergenic not near genes chr3L_12_18685001 chr3L_18685001 RAL-304_100b 2700 chr3L 18710788 18710792 chr3L 18718762 18718767 Stalker2 4 7975 0.0 8.0 4.0 0.8 7979 chr3L 18710788 intergenic not near genes chr3L 18714778 intergenic not near genes chr3L 18718767 intergenic not near genes chr3L_4_18710001 chr3L_18710001 RAL-304_100b 2701 chr3L 18721747 18721805 chr3L 18721863 18721891 36 112 8.0 8.5 8.2 3.9 144 chr3L 18721747 intergenic CG12477 - chr3L 18721819 intergenic CG12477 - chr3L 18721891 intergenic CG12477 - chr3L_36_18720001 chr3L_18720001 RAL-304_100b 2702 chr3L 18730349 18730402 chr3L 18730554 18730607 25 201 12.5 7.0 9.8 2.3 258 chr3L 18730349 intergenic not near genes chr3L 18730478 intergenic not near genes chr3L 18730607 intergenic not near genes chr3L_25_18730001 chr3L_18730001 RAL-304_100b 2703 chr3L 18736030 18736060 chr3L 18736150 18736180 21 120 9.5 15.5 12.5 1.6 150 chr3L 18736030 intergenic not near genes chr3L 18736105 intergenic not near genes chr3L 18736180 intergenic not near genes chr3L_21_18735001 chr3L_18735001 RAL-304_100b 2704 chr3L 18753522 18753564 chr3L 18753629 18753671 16 106 6.5 9.0 7.8 1.8 149 chr3L 18753522 intron ftz-f1 - chr3L 18753596 intron ftz-f1 - chr3L 18753671 intron ftz-f1 - chr3L_16_18750001 chr3L_18750001 RAL-304_100b 2705 chr3L 18770632 18770678 chr3L 18770734 18770788 15 108 6.5 8.0 7.2 1.8 156 chr3L 18770632 intron ftz-f1 - chr3L 18770710 intron ftz-f1 - chr3L 18770788 intron ftz-f1 - chr3L_15_18770001 chr3L_18770001 RAL-304_100b 2706 chr3L 18772386 18772415 chr3L 18781092 18781121 roo 26 8706 27.0 15.0 21.0 1.2 8735 chr3L 18772386 intron ftz-f1 - chr3L 18776754 intron ftz-f1 - chr3L 18781121 intron ftz-f1 - chr3L_26_18775001 chr3L_18775001 RAL-304_100b 2707 chr3L 18772416 18772436 chr3L 18781090 18781142 roo 19 8699 12.0 14.0 13.0 1.4 8726 chr3L 18772416 intron ftz-f1 - chr3L 18776779 intron ftz-f1 - chr3L 18781142 intron ftz-f1 - chr3L_19_18775001 chr3L_18775001 RAL-304_100b 2708 chr3L 18784368 18784398 chr3L 18784482 18784512 18 113 12.5 14.0 13.2 1.3 144 chr3L 18784368 intron ftz-f1 - chr3L 18784440 intron ftz-f1 - chr3L 18784512 intron ftz-f1 - chr3L_18_18780001 chr3L_18780001 RAL-304_100b 2709 chr3L 18797286 18797338 chr3L 18797395 18797447 26 105 7.5 13.5 10.5 2.3 161 chr3L 18797286 intron ftz-f1 - chr3L 18797366 intron ftz-f1 - chr3L 18797447 intron ftz-f1 - chr3L_26_18795001 chr3L_18795001 RAL-304_100b 2710 chr3L 18833758 18833811 chr3L 18834947 18834998 1360 34 1186 11.5 14.5 13.0 2.4 1240 chr3L 18833758 intron Indy - chr3L 18834378 intron Indy - chr3L 18834998 intron Indy - chr3L_34_18830001 chr3L_18830001 RAL-304_100b 2711 chr3L 18843842 18843885 chr3L 18843964 18843964 14 114 17.0 7.5 12.2 1.1 122 chr3L 18843842 intron Indy - chr3L 18843903 intron Indy - chr3L 18843964 intron Indy - chr3L_14_18840001 chr3L_18840001 RAL-304_100b 2712 chr3L 18853981 18854013 chr3L 18854107 18854139 10 126 4.5 2.0 3.2 2.4 158 chr3L 18853981 intergenic CR45387 + chr3L 18854060 intergenic CR45387 + chr3L 18854139 intergenic CR45387 + chr3L_10_18850001 chr3L_18850001 RAL-304_100b 2713 chr3L 18969524 18969577 chr3L 18969625 18969678 47 96 13.5 16.5 15.0 2.9 154 chr3L 18969524 intergenic not near genes chr3L 18969601 intergenic not near genes chr3L 18969678 intergenic not near genes chr3L_47_18965001 chr3L_18965001 RAL-304_100b 2714 chr3L 19008825 19008833 chr3L 19009188 19009196 jockey 6 363 31.0 22.0 26.5 0.2 371 chr3L 19008825 intron nkd - chr3L 19009010 intron nkd - chr3L 19009196 intron nkd - chr3L_6_19005001 chr3L_19005001 RAL-304_100b 2715 chr3L 19008834 19008871 chr3L 19009186 19009214 jockey 34 360 12.5 20.0 16.2 2.0 380 chr3L 19008834 intron nkd - chr3L 19009024 intron nkd - chr3L 19009214 intron nkd - chr3L_34_19005001 chr3L_19005001 RAL-304_100b 2716 chr3L 19015157 19015217 chr3L 19015264 19015289 23 104 0.0 6.5 3.2 5.5 132 chr3L 19015157 intron nkd - chr3L 19015223 intron nkd - chr3L 19015289 intron nkd - chr3L_23_19015001 chr3L_19015001 RAL-304_100b 2717 chr3L 19029424 19029480 chr3L 19029551 19029605 59 119 12.5 17.0 14.8 3.7 181 chr3L 19029424 intron nkd - chr3L 19029514 intron nkd - chr3L 19029605 intron nkd - chr3L_59_19025001 chr3L_19025001 RAL-304_100b 2718 chr3L 19115610 19115671 chr3L 19115815 19115821 BS 43 198 15.5 9.0 12.2 3.3 211 chr3L 19115610 intron CG14082 - chr3L 19115716 intron CG14082 - chr3L 19115821 intron CG14082 - chr3L_43_19115001 chr3L_19115001 RAL-304_100b 2719 chr3L 19117022 19117061 chr3L 19124494 19124533 mdg1 29 7468 19.0 18.5 18.8 1.5 7511 chr3L 19117022 intron CG14082 - chr3L 19120778 intron CG14082 - chr3L 19124533 intron CG14082 - chr3L_29_19120001 chr3L_19120001 RAL-304_100b 2720 chr3L 19117062 19117074 chr3L 19124493 19124546 mdg1 15 7465 10.0 18.0 14.0 1.0 7484 chr3L 19117062 intron CG14082 - chr3L 19120804 intron CG14082 - chr3L 19124546 intron CG14082 - chr3L_15_19120001 chr3L_19120001 RAL-304_100b 2721 chr3L 19130864 19130920 chr3L 19130999 19131055 46 124 20.5 14.0 17.2 2.5 191 chr3L 19130864 intron CG14082 - chr3L 19130960 intron CG14082 - chr3L 19131055 intron CG14082 - chr3L_46_19130001 chr3L_19130001 RAL-304_100b 2722 chr3L 19138144 19138150 chr3L 19138246 19138269 4 113 0.0 8.5 4.2 0.8 125 chr3L 19138144 intron CG14082 - chr3L 19138206 intron CG14082 - chr3L 19138269 intron CG14082 - chr3L_4_19135001 chr3L_19135001 RAL-304_100b 2723 chr3L 19182360 19182375 chr3L 19182466 19182480 4 106 29.5 10.0 19.8 0.2 120 chr3L 19182360 intron fz2 - chr3L 19182420 intron fz2 - chr3L 19182480 intron fz2 - chr3L_4_19180001 chr3L_19180001 RAL-304_100b 2724 chr3L 19182376 19182420 chr3L 19182465 19182521 41 100 7.5 10.0 8.8 4.2 145 chr3L 19182376 intron fz2 - chr3L 19182448 intron fz2 - chr3L 19182521 intron fz2 - chr3L_41_19180001 chr3L_19180001 RAL-304_100b 2725 chr3L 19208035 19208091 chr3L 19209434 19209480 Doc 43 1395 16.5 17.5 17.0 2.4 1445 chr3L 19208035 intron fz2 - chr3L 19208758 intron fz2 - chr3L 19209480 intron fz2 - chr3L_43_19205001 chr3L_19205001 RAL-304_100b 2726 chr3L 9307795 9307796 chr3L 19220637 19220637 6 9912841 52.5 63.5 58.0 0.1 9912842 chr3L 9307795 intergenic not near genes chr3L 14264216 intergenic not near genes chr3L 19220637 intron fz2 - chr3L_6_14260001 chr3L_14260001 RAL-304_100b 2727 chr3L 19238698 19238751 chr3L 19238830 19238883 37 131 5.5 5.0 5.2 6.0 185 chr3L 19238698 intergenic not near genes chr3L 19238790 intergenic not near genes chr3L 19238883 intergenic not near genes chr3L_37_19235001 chr3L_19235001 RAL-304_100b 2728 chr3L 19244087 19244139 chr3L 19244190 19244242 53 99 17.0 24.0 20.5 2.5 155 chr3L 19244087 intergenic not near genes chr3L 19244164 intergenic not near genes chr3L 19244242 intergenic not near genes chr3L_53_19240001 chr3L_19240001 RAL-304_100b 2729 chr3L 19262216 19262228 chr3L 19262307 19262335 10 103 0.0 7.0 3.5 2.2 119 chr3L 19262216 3` UTR Bet1 + chr3L 19262276 3` UTR,3` UTR Bet1 +,Max - chr3L 19262335 3` UTR,3` UTR Bet1 +,Max - chr3L_10_19260001 chr3L_19260001 RAL-304_100b 2730 chr3L 19262233 19262244 chr3L 19262303 19262351 8 100 0.5 7.0 3.8 1.7 118 chr3L 19262233 3` UTR,3` UTR Bet1 +,Max - chr3L 19262292 3` UTR,3` UTR Bet1 +,Max - chr3L 19262351 3` UTR,3` UTR Bet1 +,Max - chr3L_8_19260001 chr3L_19260001 RAL-304_100b 2731 chr3L 19269790 19269848 chr3L 19270019 19270062 58 219 12.0 16.0 14.0 3.9 272 chr3L 19269790 intron,exon CG14085 +,CG14088 - chr3L 19269926 intron,exon CG14085 +,CG14088 - chr3L 19270062 intron,exon CG14085 +,CG14088 - chr3L_58_19265001 chr3L_19265001 RAL-304_100b 2732 chr3L 19279651 19279665 chr3L 19279768 19279782 4 117 50.5 11.0 30.8 0.1 131 chr3L 19279651 intron CG14086 + chr3L 19279716 exon CG14086 + chr3L 19279782 exon CG14086 + chr3L_4_19275001 chr3L_19275001 RAL-304_100b 2733 chr3L 19279666 19279710 chr3L 19279766 19279784 30 104 24.0 9.5 16.8 1.7 118 chr3L 19279666 intron CG14086 + chr3L 19279725 exon CG14086 + chr3L 19279784 exon CG14086 + chr3L_30_19275001 chr3L_19275001 RAL-304_100b 2734 chr3L 19390097 19390103 chr3L 19390213 19390219 INE-1 6 116 33.0 10.5 21.8 0.3 122 chr3L 19390097 intron CG32206 - chr3L 19390158 intron CG32206 - chr3L 19390219 intron CG32206 - chr3L_6_19390001 chr3L_19390001 RAL-304_100b 2735 chr3L 19398917 19398926 chr3L 19403659 19403667 F-element 9 4741 17.5 19.5 18.5 0.5 4750 chr3L 19398917 intron CG32206 - chr3L 19401292 intron CG32206 - chr3L 19403667 intron CG32206 - chr3L_9_19400001 chr3L_19400001 RAL-304_100b 2736 chr3L 19398927 19398931 chr3L 19403658 19403665 F-element 5 4738 14.5 19.5 17.0 0.3 4738 chr3L 19398927 intron CG32206 - chr3L 19401296 intron CG32206 - chr3L 19403665 intron CG32206 - chr3L_5_19400001 chr3L_19400001 RAL-304_100b 2737 chr3L 19404871 19405008 chr3L 19404986 19405093 29 100 6.5 13.0 9.8 2.7 222 chr3L 19404871 intron CG32206 - chr3L 19404982 intron CG32206 - chr3L 19405093 intron CG32206 - chr3L_29_19400001 chr3L_19400001 RAL-304_100b 2738 chr3L 19454748 19454803 chr3L 19454873 19454930 7 122 7.5 16.0 11.8 0.5 182 chr3L 19454748 intergenic CR45434 + chr3L 19454839 5` UTR CR45434 + chr3L 19454930 5` UTR CR45434 + chr3L_7_19450001 chr3L_19450001 RAL-304_100b 2739 chr3L 19464309 19464324 chr3L 19464396 19464413 13 92 34.5 42.5 38.5 0.3 104 chr3L 19464309 exon CG14095 - chr3L 19464361 exon CG14095 - chr3L 19464413 exon CG14095 - chr3L_13_19460001 chr3L_19460001 RAL-304_100b 2740 chr3L 19487676 19487681 chr3L 19487781 19487786 4 105 14.5 20.0 17.2 0.2 110 chr3L 19487676 3` UTR,5` UTR pncr009:3L -,CG32212 + chr3L 19487731 3` UTR,5` UTR pncr009:3L -,CG32212 + chr3L 19487786 intron,5` UTR pncr009:3L -,CG32212 + chr3L_4_19485001 chr3L_19485001 RAL-304_100b 2741 chr3L 19487682 19487690 chr3L 19487780 19487795 11 101 15.0 20.0 17.5 0.6 113 chr3L 19487682 3` UTR,5` UTR pncr009:3L -,CG32212 + chr3L 19487738 3` UTR,5` UTR pncr009:3L -,CG32212 + chr3L 19487795 intron,5` UTR pncr009:3L -,CG32212 + chr3L_11_19485001 chr3L_19485001 RAL-304_100b 2742 chr3L 19487691 19487710 chr3L 19487778 19487815 25 100 14.5 21.5 18.0 1.3 124 chr3L 19487691 3` UTR,5` UTR pncr009:3L -,CG32212 + chr3L 19487753 3` UTR,5` UTR pncr009:3L -,CG32212 + chr3L 19487815 intron,5` UTR pncr009:3L -,CG32212 + chr3L_25_19485001 chr3L_19485001 RAL-304_100b 2743 chr3L 19487713 19487725 chr3L 19487776 19487830 14 101 13.0 20.0 16.5 0.8 117 chr3L 19487713 3` UTR,5` UTR pncr009:3L -,CG32212 + chr3L 19487772 intron,5` UTR pncr009:3L -,CG32212 + chr3L 19487830 intron,5` UTR pncr009:3L -,CG32212 + chr3L_14_19485001 chr3L_19485001 RAL-304_100b 2744 chr3L 19487728 19487729 chr3L 19487833 19487834 4 105 12.5 53.5 33.0 0.1 106 chr3L 19487728 3` UTR,5` UTR pncr009:3L -,CG32212 + chr3L 19487781 intron,5` UTR pncr009:3L -,CG32212 + chr3L 19487834 intron,5` UTR pncr009:3L -,CG32212 + chr3L_4_19485001 chr3L_19485001 RAL-304_100b 2745 chr3L 19493877 19493928 chr3L 19494260 19494311 36 380 13.0 23.5 18.2 1.9 434 chr3L 19493877 intron CG9449 - chr3L 19494094 intron CG9449 - chr3L 19494311 intron CG9449 - chr3L_36_19490001 chr3L_19490001 RAL-304_100b 2746 chr3L 19792339 19792367 chr3L 19792459 19792464 11 117 17.5 13.0 15.2 0.7 125 chr3L 19792339 intron,intron CG42637 -,Gyc76C - chr3L 19792402 intron,intron CG42637 -,Gyc76C - chr3L 19792464 intron,intron CG42637 -,Gyc76C - chr3L_11_19790001 chr3L_19790001 RAL-304_100b 2747 chr3L 19820279 19820287 chr3L 19827853 19827861 412 5 7574 26.5 5.5 16.0 0.3 7582 chr3L 19820279 intron Deaf1 + chr3L 19824070 intron Deaf1 + chr3L 19827861 intron Deaf1 + chr3L_5_19820001 chr3L_19820001 RAL-304_100b 2748 chr3L 19820290 19820319 chr3L 19827849 19827893 412 18 7573 10.5 4.5 7.5 2.1 7603 chr3L 19820290 intron Deaf1 + chr3L 19824092 intron Deaf1 + chr3L 19827893 intron Deaf1 + chr3L_18_19820001 chr3L_19820001 RAL-304_100b 2749 chr3L 19848484 19848532 chr3L 19857699 19857724 roo 31 9213 15.0 14.5 14.8 2.0 9240 chr3L 19848484 intron Papss + chr3L 19853104 intron Papss + chr3L 19857724 intron Papss + chr3L_31_19850001 chr3L_19850001 RAL-304_100b 2750 chr3L 19981178 19981236 chr3L 19981283 19981341 33 102 10.0 8.0 9.0 3.3 163 chr3L 19981178 intergenic not near genes chr3L 19981260 intergenic CG17732 + chr3L 19981341 intergenic CG17732 + chr3L_33_19980001 chr3L_19980001 RAL-304_100b 2751 chr3L 20083406 20083419 chr3L 20083526 20083529 7 118 47.5 41.5 44.5 0.2 123 chr3L 20083406 intron sNPF-R - chr3L 20083468 intron sNPF-R - chr3L 20083529 intron sNPF-R - chr3L_7_20080001 chr3L_20080001 RAL-304_100b 2752 chr3L 20083420 20083424 chr3L 20083525 20083544 4 116 26.0 40.5 33.2 0.1 124 chr3L 20083420 intron sNPF-R - chr3L 20083482 intron sNPF-R - chr3L 20083544 intron sNPF-R - chr3L_4_20080001 chr3L_20080001 RAL-304_100b 2753 chr3L 20086766 20086815 chr3L 20086869 20086902 28 100 10.0 0.0 5.0 4.7 136 chr3L 20086766 intron sNPF-R - chr3L 20086834 intron sNPF-R - chr3L 20086902 intron sNPF-R - chr3L_28_20085001 chr3L_20085001 RAL-304_100b 2754 chr3L 20096059 20096118 chr3L 20096188 20096242 25 122 14.5 1.0 7.8 2.8 183 chr3L 20096059 intergenic not near genes chr3L 20096150 intergenic not near genes chr3L 20096242 intergenic not near genes chr3L_25_20095001 chr3L_20095001 RAL-304_100b 2755 chr3L 20113636 20113688 chr3L 20122918 20122970 roo 22 9281 8.0 9.0 8.5 2.3 9334 chr3L 20113636 intergenic not near genes chr3L 20118303 intergenic not near genes chr3L 20122970 intergenic not near genes chr3L_22_20115001 chr3L_20115001 RAL-304_100b 2756 chr3L 20139496 20139527 chr3L 20139603 20139638 44 106 35.5 13.5 24.5 1.7 142 chr3L 20139496 exon CG7328 - chr3L 20139567 exon CG7328 - chr3L 20139638 exon CG7328 - chr3L_44_20135001 chr3L_20135001 RAL-304_100b 2757 chr3L 20139528 20139550 chr3L 20139600 20139655 33 106 20.0 12.5 16.2 1.9 127 chr3L 20139528 exon CG7328 - chr3L 20139592 exon CG7328 - chr3L 20139655 exon CG7328 - chr3L_33_20135001 chr3L_20135001 RAL-304_100b 2758 chr3L 20184541 20184598 chr3L 20184652 20184709 35 109 8.0 6.5 7.2 4.3 168 chr3L 20184541 intron CG42674 - chr3L 20184625 intron CG42674 - chr3L 20184709 intron CG42674 - chr3L_35_20180001 chr3L_20180001 RAL-304_100b 2759 chr3L 20218207 20218228 chr3L 20218348 20218366 11 141 0.0 17.5 8.8 1.1 159 chr3L 20218207 intergenic CG6933 - chr3L 20218286 intergenic CG6933 - chr3L 20218366 intergenic CG6933 - chr3L_11_20215001 chr3L_20215001 RAL-304_100b 2760 chr3L 20257313 20257359 chr3L 20258452 20258504 pogo 41 1144 11.5 11.0 11.2 3.4 1191 chr3L 20257313 intron rdgC + chr3L 20257908 intron rdgC + chr3L 20258504 intron rdgC + chr3L_41_20255001 chr3L_20255001 RAL-304_100b 2761 chr3L 20321112 20321115 chr3L 20342904 20342908 17.6 4 21789 35.0 70.0 52.5 0.1 21796 chr3L 20321112 exon Spn77Bb + chr3L 20332010 intergenic not near genes chr3L 20342908 exon Spn77Bc + chr3L_4_20330001 chr3L_20330001 RAL-304_100b 2762 chr3L 20377622 20377677 chr3L 20377740 20377795 54 114 12.5 18.5 15.5 3.3 173 chr3L 20377622 intron RhoBTB + chr3L 20377708 intron RhoBTB + chr3L 20377795 intron RhoBTB + chr3L_54_20375001 chr3L_20375001 RAL-304_100b 2763 chr3L 20386913 20386972 chr3L 20387040 20387099 37 126 9.0 12.5 10.8 3.1 186 chr3L 20386913 intron fbl + chr3L 20387006 intron fbl + chr3L 20387099 intron fbl + chr3L_37_20385001 chr3L_20385001 RAL-304_100b 2764 chr3L 20476733 20476784 chr3L 20484357 20484395 springer 28 7622 11.0 15.0 13.0 2.0 7662 chr3L 20476733 3` UTR isoQC + chr3L 20480564 intergenic not near genes chr3L 20484395 3` UTR ZnT77C - chr3L_28_20480001 chr3L_20480001 RAL-304_100b 2765 chr3L 20525228 20525228 chr3L 22908066 22908067 10 2382838 40.0 64.0 52.0 0.2 2382839 chr3L 20525228 intron CG4825 - chr3L 21716648 intergenic not near genes chr3L 22908067 intergenic not near genes chr3L_10_21715001 chr3L_21715001 RAL-304_100b 2766 chr3L 20525228 20525228 chr3L 24821492 24821494 8 4296265 40.0 46.5 43.2 0.2 4296266 chr3L 20525228 intron CG4825 - chr3L 22673361 intron CG14457 + chr3L 24821494 intergenic not near genes chr3L_8_22670001 chr3L_22670001 RAL-304_100b 2767 chr3L 20525229 20525229 chr3L 22908066 22908067 8 2382838 40.0 64.0 52.0 0.2 2382838 chr3L 20525229 intron CG4825 - chr3L 21716648 intergenic not near genes chr3L 22908067 intergenic not near genes chr3L_8_21715001 chr3L_21715001 RAL-304_100b 2768 chr3L 20525229 20525229 chr3L 24821492 24821494 7 4296264 40.0 46.5 43.2 0.2 4296265 chr3L 20525229 intron CG4825 - chr3L 22673362 intron CG14457 + chr3L 24821494 intergenic not near genes chr3L_7_22670001 chr3L_22670001 RAL-304_100b 2769 chr3L 20525230 20525230 chr3L 22908066 22908067 6 2382837 40.0 64.0 52.0 0.1 2382837 chr3L 20525230 intron CG4825 - chr3L 21716648 intergenic not near genes chr3L 22908067 intergenic not near genes chr3L_6_21715001 chr3L_21715001 RAL-304_100b 2770 chr3L 20525230 20525230 chr3L 24821493 24821494 8 4296264 40.0 47.5 43.8 0.2 4296264 chr3L 20525230 intron CG4825 - chr3L 22673362 intron CG14457 + chr3L 24821494 intergenic not near genes chr3L_8_22670001 chr3L_22670001 RAL-304_100b 2771 chr3L 20590039 20590096 chr3L 20590603 20590624 412 61 557 12.5 15.0 13.8 4.1 585 chr3L 20590039 intergenic not near genes chr3L 20590332 intergenic not near genes chr3L 20590624 intergenic not near genes chr3L_61_20590001 chr3L_20590001 RAL-304_100b 2772 chr3L 20657983 20658037 chr3L 20658142 20658196 46 154 13.5 12.0 12.8 3.3 213 chr3L 20657983 intergenic not near genes chr3L 20658090 intergenic not near genes chr3L 20658196 intergenic not near genes chr3L_46_20655001 chr3L_20655001 RAL-304_100b 2773 chr3L 20691865 20691918 chr3L 20692020 20692073 47 153 16.5 7.5 12.0 3.6 208 chr3L 20691865 intergenic kni - chr3L 20691969 intergenic kni - chr3L 20692073 intergenic kni - chr3L_47_20690001 chr3L_20690001 RAL-304_100b 2774 chr3L 20710739 20710792 chr3L 20710835 20710894 44 100 14.5 16.5 15.5 2.7 155 chr3L 20710739 intergenic not near genes chr3L 20710816 intergenic not near genes chr3L 20710894 intergenic not near genes chr3L_44_20710001 chr3L_20710001 RAL-304_100b 2775 chr3L 20723315 20723332 chr3L 20723453 20723470 11 137 16.5 11.0 13.8 0.7 155 chr3L 20723315 intergenic not near genes chr3L 20723392 intergenic not near genes chr3L 20723470 intergenic not near genes chr3L_11_20720001 chr3L_20720001 RAL-304_100b 2776 chr3L 20723335 20723345 chr3L 20723452 20723452 6 127 12.0 10.0 11.0 0.5 117 chr3L 20723335 intergenic not near genes chr3L 20723394 intergenic not near genes chr3L 20723452 intergenic not near genes chr3L_6_20720001 chr3L_20720001 RAL-304_100b 2777 chr3L 20729461 20729487 chr3L 20729570 20729596 19 108 20.0 10.5 15.2 1.2 135 chr3L 20729461 3` UTR CR43945 - chr3L 20729528 3` UTR CR43945 - chr3L 20729596 3` UTR CR43945 - chr3L_19_20725001 chr3L_20725001 RAL-304_100b 2778 chr3L 20729492 20729516 chr3L 20729569 20729625 26 102 6.5 10.0 8.2 2.8 133 chr3L 20729492 3` UTR CR43945 - chr3L 20729558 3` UTR CR43945 - chr3L 20729625 3` UTR CR43945 - chr3L_26_20725001 chr3L_20725001 RAL-304_100b 2779 chr3L 20739468 20739501 chr3L 20739608 20739641 15 138 22.0 7.0 14.5 1.0 173 chr3L 20739468 intron CG13252 + chr3L 20739554 intron CG13252 + chr3L 20739641 intron CG13252 + chr3L_15_20735001 chr3L_20735001 RAL-304_100b 2780 chr3L 20748594 20748597 chr3L 20748720 20748723 4 126 9.0 32.0 20.5 0.2 129 chr3L 20748594 intergenic not near genes chr3L 20748658 intergenic not near genes chr3L 20748723 intergenic not near genes chr3L_4_20745001 chr3L_20745001 RAL-304_100b 2781 chr3L 20762788 20762818 chr3L 20762900 20762930 20 112 10.5 16.5 13.5 1.4 142 chr3L 20762788 intergenic not near genes chr3L 20762859 intergenic not near genes chr3L 20762930 intergenic not near genes chr3L_20_20760001 chr3L_20760001 RAL-304_100b 2782 chr3L 20819601 20819657 chr3L 20819849 20819905 27 246 15.5 9.0 12.2 2.0 304 chr3L 20819601 intron Pka-R1 + chr3L 20819753 intron Pka-R1 + chr3L 20819905 intron Pka-R1 + chr3L_27_20815001 chr3L_20815001 RAL-304_100b 2783 chr3L 20821258 20821311 chr3L 20824894 20824947 NOF 31 3633 12.5 10.5 11.5 2.5 3689 chr3L 20821258 intron Pka-R1 + chr3L 20823102 intron Pka-R1 + chr3L 20824947 intron Pka-R1 + chr3L_31_20820001 chr3L_20820001 RAL-304_100b 2784 chr3L 20849246 20849297 chr3L 20849350 20849401 31 103 12.0 13.5 12.8 2.2 155 chr3L 20849246 intron CG32432 - chr3L 20849324 intron CG32432 - chr3L 20849401 intron CG32432 - chr3L_31_20845001 chr3L_20845001 RAL-304_100b 2785 chr3L 20864622 20864677 chr3L 20864728 20864782 39 102 8.5 6.5 7.5 4.6 160 chr3L 20864622 intron CG32432 - chr3L 20864702 intron CG32432 - chr3L 20864782 intron CG32432 - chr3L_39_20860001 chr3L_20860001 RAL-304_100b 2786 chr3L 20884857 20884859 chr3L 20884943 20884966 4 102 27.0 28.0 27.5 0.1 109 chr3L 20884857 intron CG32432 - chr3L 20884912 intron CG32432 - chr3L 20884966 intron CG32432 - chr3L_4_20880001 chr3L_20880001 RAL-304_100b 2787 chr3L 20886801 20886829 chr3L 20886901 20886913 7 98 16.5 6.5 11.5 0.6 112 chr3L 20886801 intergenic CR44686 - chr3L 20886857 intergenic CR44686 - chr3L 20886913 intergenic CR44686 - chr3L_7_20885001 chr3L_20885001 RAL-304_100b 2788 chr3L 20931769 20931825 chr3L 20931882 20931937 14 112 6.5 5.0 5.8 2.1 168 chr3L 20931769 intron fng - chr3L 20931853 intron fng - chr3L 20931937 intron fng - chr3L_14_20930001 chr3L_20930001 RAL-304_100b 2789 chr3L 20964596 20964607 chr3L 20964698 20964709 8 101 38.0 15.0 26.5 0.3 113 chr3L 20964596 3` UTR CG12983 - chr3L 20964652 3` UTR CG12983 - chr3L 20964709 3` UTR CG12983 - chr3L_8_20960001 chr3L_20960001 RAL-304_100b 2790 chr3L 20964608 20964635 chr3L 20964695 20964730 34 98 19.0 13.0 16.0 2.0 122 chr3L 20964608 3` UTR CG12983 - chr3L 20964669 3` UTR CG12983 - chr3L 20964730 3` UTR CG12983 - chr3L_34_20960001 chr3L_20960001 RAL-304_100b 2791 chr3L 20964636 20964644 chr3L 20964694 20964731 11 96 10.0 12.0 11.0 0.9 95 chr3L 20964636 3` UTR CG12983 - chr3L 20964684 3` UTR CG12983 - chr3L 20964731 3` UTR CG12983 - chr3L_11_20960001 chr3L_20960001 RAL-304_100b 2792 chr3L 20977390 20977447 chr3L 20977541 20977572 50 146 13.0 19.0 16.0 2.9 182 chr3L 20977390 intergenic not near genes chr3L 20977481 intergenic not near genes chr3L 20977572 intergenic not near genes chr3L_50_20975001 chr3L_20975001 RAL-304_100b 2793 chr3L 21010347 21010398 chr3L 21010479 21010500 19 127 10.5 9.0 9.8 1.8 153 chr3L 21010347 intron skd - chr3L 21010424 intron skd - chr3L 21010500 intron skd - chr3L_19_21010001 chr3L_21010001 RAL-304_100b 2794 chr3L 21014892 21014907 chr3L 21023398 21023413 Tirant 13 8506 45.5 30.0 37.8 0.3 8521 chr3L 21014892 intron skd - chr3L 21019152 intron skd - chr3L 21023413 intron skd - chr3L_13_21015001 chr3L_21015001 RAL-304_100b 2795 chr3L 21014908 21014948 chr3L 21023394 21023437 Tirant 66 8498 14.0 26.5 20.2 3.1 8529 chr3L 21014908 intron skd - chr3L 21019172 intron skd - chr3L 21023437 intron skd - chr3L_66_21015001 chr3L_21015001 RAL-304_100b 2796 chr3L 21057120 21057162 chr3L 21057353 21057396 38 237 8.0 7.5 7.8 4.3 276 chr3L 21057120 intron siz + chr3L 21057258 intron siz + chr3L 21057396 intron siz + chr3L_38_21055001 chr3L_21055001 RAL-304_100b 2797 chr3L 21067929 21067981 chr3L 21068031 21068080 60 99 16.0 11.5 13.8 4.1 151 chr3L 21067929 intron siz + chr3L 21068004 intron siz + chr3L 21068080 intron siz + chr3L_60_21065001 chr3L_21065001 RAL-304_100b 2798 chr3L 21094592 21094603 chr3L 21094701 21094711 13 108 24.5 20.5 22.5 0.6 119 chr3L 21094592 intron ko - chr3L 21094652 intron ko - chr3L 21094711 intron ko - chr3L_13_21090001 chr3L_21090001 RAL-304_100b 2799 chr3L 21094604 21094647 chr3L 21094698 21094756 46 103 10.5 19.5 15.0 2.9 152 chr3L 21094604 intron ko - chr3L 21094680 intron ko - chr3L 21094756 intron ko - chr3L_46_21090001 chr3L_21090001 RAL-304_100b 2800 chr3L 21100190 21100234 chr3L 21100315 21100327 40 120 15.5 14.0 14.8 2.5 137 chr3L 21100190 5` UTR ko - chr3L 21100258 intron ko - chr3L 21100327 intron ko - chr3L_40_21100001 chr3L_21100001 RAL-304_100b 2801 chr3L 21151840 21151894 chr3L 21156949 21157003 flea 48 5107 13.5 10.0 11.8 3.8 5163 chr3L 21151840 intron Ac78C - chr3L 21154422 intron Ac78C - chr3L 21157003 intron Ac78C - chr3L_48_21150001 chr3L_21150001 RAL-304_100b 2802 chr3L 21163213 21163274 chr3L 21163320 21163361 21 101 4.0 10.0 7.0 2.6 148 chr3L 21163213 intron Ac78C - chr3L 21163287 intron Ac78C - chr3L 21163361 intron Ac78C - chr3L_21_21160001 chr3L_21160001 RAL-304_100b 2803 chr3L 21243723 21243735 chr3L 21251311 21251322 412 5 7588 28.0 25.0 26.5 0.2 7599 chr3L 21243723 intron Eip78C + chr3L 21247522 intron Eip78C + chr3L 21251322 intron Eip78C + chr3L_5_21245001 chr3L_21245001 RAL-304_100b 2804 chr3L 21243742 21243774 chr3L 21251310 21251325 412 18 7574 11.5 25.0 18.2 0.9 7583 chr3L 21243742 intron Eip78C + chr3L 21247534 intron Eip78C + chr3L 21251325 intron Eip78C + chr3L_18_21245001 chr3L_21245001 RAL-304_100b 2805 chr3L 21256504 21256560 chr3L 21256623 21256669 63 106 11.0 16.5 13.8 4.3 165 chr3L 21256504 intron Eip78C + chr3L 21256586 intron Eip78C + chr3L 21256669 intron Eip78C + chr3L_63_21255001 chr3L_21255001 RAL-304_100b 2806 chr3L 21306124 21306136 chr3L 21315308 21315320 roo 5 9184 30.0 8.5 19.2 0.2 9196 chr3L 21306124 3` UTR CG7632 + chr3L 21310722 intron Pc - chr3L 21315320 3` UTR Pc - chr3L_5_21310001 chr3L_21310001 RAL-304_100b 2807 chr3L 21306137 21306180 chr3L 21315306 21315335 roo 22 9178 15.5 7.5 11.5 1.8 9198 chr3L 21306137 3` UTR,3` UTR CG7632 +,Pc - chr3L 21310736 intron Pc - chr3L 21315335 3` UTR Pc - chr3L_22_21310001 chr3L_21310001 RAL-304_100b 2808 chr3L 21319507 21319508 chr3L 21319620 21319623 4 114 41.5 12.0 26.8 0.1 116 chr3L 21319507 5` UTR Rab26 + chr3L 21319565 5` UTR Rab26 + chr3L 21319623 5` UTR Rab26 + chr3L_4_21315001 chr3L_21315001 RAL-304_100b 2809 chr3L 21319517 21319559 chr3L 21319616 21319674 27 110 11.5 10.5 11.0 2.2 157 chr3L 21319517 5` UTR Rab26 + chr3L 21319596 5` UTR Rab26 + chr3L 21319674 5` UTR Rab26 + chr3L_27_21315001 chr3L_21315001 RAL-304_100b 2810 chr3L 21361701 21361753 chr3L 21362680 21362732 G2 20 974 9.5 11.5 10.5 1.7 1031 chr3L 21361701 intergenic CG32440 + chr3L 21362216 intergenic not near genes chr3L 21362732 intergenic not near genes chr3L_20_21360001 chr3L_21360001 RAL-304_100b 2811 chr3L 21372698 21372754 chr3L 21379231 21379286 McClintock 18 6529 3.5 9.0 6.2 2.5 6588 chr3L 21372698 intergenic not near genes chr3L 21375992 intergenic not near genes chr3L 21379286 intergenic not near genes chr3L_18_21375001 chr3L_21375001 RAL-304_100b 2812 chr3L 21406971 21407028 chr3L 21407074 21407132 34 100 16.0 17.5 16.8 1.9 161 chr3L 21406971 intron rgn + chr3L 21407052 intron rgn + chr3L 21407132 intron rgn + chr3L_34_21405001 chr3L_21405001 RAL-304_100b 2813 chr3L 21415126 21415145 chr3L 21415234 21415253 18 107 22.0 17.0 19.5 0.9 127 chr3L 21415126 intron rgn + chr3L 21415190 intron rgn + chr3L 21415253 intron rgn + chr3L_18_21415001 chr3L_21415001 RAL-304_100b 2814 chr3L 21415146 21415166 chr3L 21415219 21415274 7 101 12.0 10.0 11.0 0.6 128 chr3L 21415146 intron rgn + chr3L 21415210 intron rgn + chr3L 21415274 intron rgn + chr3L_7_21415001 chr3L_21415001 RAL-304_100b 2815 chr3L 21415502 21415561 chr3L 21415605 21415664 57 100 18.5 16.5 17.5 3.1 162 chr3L 21415502 intron rgn + chr3L 21415583 intron rgn + chr3L 21415664 intron rgn + chr3L_57_21415001 chr3L_21415001 RAL-304_100b 2816 chr3L 21417817 21417820 chr3L 21417916 21417917 4 102 45.5 8.0 26.8 0.1 100 chr3L 21417817 intron rgn + chr3L 21417867 intron rgn + chr3L 21417917 intron rgn + chr3L_4_21415001 chr3L_21415001 RAL-304_100b 2817 chr3L 21417821 21417868 chr3L 21417915 21417974 31 99 20.0 8.0 14.0 2.1 153 chr3L 21417821 intron rgn + chr3L 21417898 intron rgn + chr3L 21417974 intron rgn + chr3L_31_21415001 chr3L_21415001 RAL-304_100b 2818 chr3L 4341330 4341502 chr3L 21448026 21448026 20 17106685 51.0 51.5 51.2 0.4 17106696 chr3L 4341330 intron Cip4 - chr3L 12894678 3` UTR CG14118 + chr3L 21448026 3` UTR Syx7 + chr3L_20_12890001 chr3L_12890001 RAL-304_100b 2819 chr3L 7201270 7201271 chr3L 21448026 21448026 4 14246756 55.0 51.5 53.2 0.1 14246756 chr3L 7201270 intergenic not near genes chr3L 14324648 intron,intron fz +,CR45025 - chr3L 21448026 3` UTR Syx7 + chr3L_4_14320001 chr3L_14320001 RAL-304_100b 2820 chr3L 4341332 4341335 chr3L 21448027 21448027 10 17106695 58.5 52.0 55.2 0.2 17106695 chr3L 4341332 intron Cip4 - chr3L 12894680 3` UTR CG14118 + chr3L 21448027 3` UTR Syx7 + chr3L_10_12890001 chr3L_12890001 RAL-304_100b 2821 chr3L 21458525 21458533 chr3L 21458664 21458673 6 139 37.0 17.0 27.0 0.2 148 chr3L 21458525 intergenic not near genes chr3L 21458599 intergenic not near genes chr3L 21458673 intergenic not near genes chr3L_6_21455001 chr3L_21455001 RAL-304_100b 2822 chr3L 21458535 21458578 chr3L 21458659 21458718 37 134 13.5 15.0 14.2 2.4 183 chr3L 21458535 intergenic not near genes chr3L 21458626 intergenic not near genes chr3L 21458718 intergenic not near genes chr3L_37_21455001 chr3L_21455001 RAL-304_100b 2823 chr3L 21576166 21576204 chr3L 21576268 21576312 12 105 10.0 25.0 17.5 0.6 146 chr3L 21576166 3` UTR CR43939 - chr3L 21576239 3` UTR CR43939 - chr3L 21576312 3` UTR CR43939 - chr3L_12_21575001 chr3L_21575001 RAL-304_100b 2824 chr3L 21599755 21599805 chr3L 21599909 21599942 39 151 14.0 13.0 13.5 2.7 187 chr3L 21599755 intron TfAP-2 + chr3L 21599848 intron TfAP-2 + chr3L 21599942 intron TfAP-2 + chr3L_39_21595001 chr3L_21595001 RAL-304_100b 2825 chr3L 21656969 21657024 chr3L 21657087 21657142 43 113 16.5 14.0 15.2 2.7 173 chr3L 21656969 intron CG43980 + chr3L 21657056 intron CG43980 + chr3L 21657142 intron CG43980 + chr3L_43_21655001 chr3L_21655001 RAL-304_100b 2826 chr3L 21692898 21692900 chr3L 21693094 21693096 4 196 30.5 15.0 22.8 0.2 198 chr3L 21692898 3` UTR CG32447 - chr3L 21692997 3` UTR CG32447 - chr3L 21693096 3` UTR CG32447 - chr3L_4_21690001 chr3L_21690001 RAL-304_100b 2827 chr3L 21692903 21692953 chr3L 21693093 21693149 45 192 9.5 14.0 11.8 3.5 246 chr3L 21692903 3` UTR CG32447 - chr3L 21693026 3` UTR CG32447 - chr3L 21693149 3` UTR CG32447 - chr3L_45_21690001 chr3L_21690001 RAL-304_100b 2828 chr3L 21749293 21749302 chr3L 21754478 21754487 Doc 8 5185 62.0 17.5 39.8 0.2 5194 chr3L 21749293 intron Syn1 - chr3L 21751890 intron Syn1 - chr3L 21754487 intron Syn1 - chr3L_8_21750001 chr3L_21750001 RAL-304_100b 2829 chr3L 21749303 21749304 chr3L 21754477 21754489 Doc 4 5180 59.5 16.5 38.0 0.1 5186 chr3L 21749303 intron Syn1 - chr3L 21751896 intron Syn1 - chr3L 21754489 intron Syn1 - chr3L_4_21750001 chr3L_21750001 RAL-304_100b 2830 chr3L 21749305 21749335 chr3L 21754472 21754490 Doc 27 5175 35.0 14.0 24.5 1.1 5185 chr3L 21749305 intron Syn1 - chr3L 21751898 intron Syn1 - chr3L 21754490 intron Syn1 - chr3L_27_21750001 chr3L_21750001 RAL-304_100b 2831 chr3L 21749337 21749353 chr3L 21754471 21754494 Doc 12 5158 20.5 13.5 17.0 0.7 5157 chr3L 21749337 intron Syn1 - chr3L 21751916 intron Syn1 - chr3L 21754494 intron Syn1 - chr3L_12_21750001 chr3L_21750001 RAL-304_100b 2832 chr3L 21770015 21770040 chr3L 21770127 21770152 22 110 30.0 35.5 32.8 0.7 137 chr3L 21770015 5` UTR,intron,5` UTR Syn1 -,CG42689 +,CG7370 + chr3L 21770084 5` UTR,intron,intron Syn1 -,CG42689 +,CG7370 + chr3L 21770152 5` UTR,intron,intron Syn1 -,CG42689 +,CG7370 + chr3L_22_21770001 chr3L_21770001 RAL-304_100b 2833 chr3L 21776662 21776675 chr3L 21776774 21776787 10 110 1.0 19.0 10.0 0.9 125 chr3L 21776662 intron,intron CG42689 +,CG42552 + chr3L 21776724 intron,intron CG42689 +,CG42552 + chr3L 21776787 intron,intron CG42689 +,CG42552 + chr3L_10_21775001 chr3L_21775001 RAL-304_100b 2834 chr3L 21776677 21776702 chr3L 21776771 21776798 18 109 1.0 19.0 10.0 1.6 121 chr3L 21776677 intron,intron CG42689 +,CG42552 + chr3L 21776738 intron,intron CG42689 +,CG42552 + chr3L 21776798 intron,intron CG42689 +,CG42552 + chr3L_18_21775001 chr3L_21775001 RAL-304_100b 2835 chr3L 21788617 21788672 chr3L 21788863 21788918 27 245 7.0 8.0 7.5 3.2 301 chr3L 21788617 intergenic not near genes chr3L 21788768 intergenic not near genes chr3L 21788918 intergenic not near genes chr3L_27_21785001 chr3L_21785001 RAL-304_100b 2836 chr3L 21809941 21809971 chr3L 21810068 21810093 22 123 21.5 45.0 33.2 0.6 152 chr3L 21809941 intron eg + chr3L 21810017 intron eg + chr3L 21810093 intron eg + chr3L_22_21810001 chr3L_21810001 RAL-304_100b 2837 chr3L 21852233 21852239 chr3L 21852351 21852351 4 116 41.5 12.0 26.8 0.1 118 chr3L 21852233 intron mub + chr3L 21852292 intron mub + chr3L 21852351 intron mub + chr3L_4_21850001 chr3L_21850001 RAL-304_100b 2838 chr3L 21852242 21852284 chr3L 21852348 21852402 62 112 14.0 10.5 12.2 4.7 160 chr3L 21852242 intron mub + chr3L 21852322 intron mub + chr3L 21852402 intron mub + chr3L_62_21850001 chr3L_21850001 RAL-304_100b 2839 chr3L 21869432 21869440 chr3L 21869538 21869545 6 105 50.5 20.5 35.5 0.2 113 chr3L 21869432 intron mub + chr3L 21869488 intron mub + chr3L 21869545 intron mub + chr3L_6_21865001 chr3L_21865001 RAL-304_100b 2840 chr3L 21869441 21869446 chr3L 21869537 21869548 6 103 44.5 20.0 32.2 0.2 107 chr3L 21869441 intron mub + chr3L 21869494 intron mub + chr3L 21869548 intron mub + chr3L_6_21865001 chr3L_21865001 RAL-304_100b 2841 chr3L 21869447 21869487 chr3L 21869535 21869587 59 96 20.5 19.0 19.8 2.8 140 chr3L 21869447 intron mub + chr3L 21869517 intron mub + chr3L 21869587 intron mub + chr3L_59_21865001 chr3L_21865001 RAL-304_100b 2842 chr3L 22094256 22094309 chr3L 22094374 22094410 44 120 13.0 14.5 13.8 3.0 154 chr3L 22094256 intergenic not near genes chr3L 22094333 intergenic not near genes chr3L 22094410 intergenic not near genes chr3L_44_22090001 chr3L_22090001 RAL-304_100b 2843 chr3L 22099655 22099665 chr3L 22105866 22105873 3S18 5 6210 35.0 12.5 23.8 0.2 6218 chr3L 22099655 intergenic not near genes chr3L 22102764 intergenic not near genes chr3L 22105873 intergenic not near genes chr3L_5_22100001 chr3L_22100001 RAL-304_100b 2844 chr3L 22099666 22099705 chr3L 22105862 22105915 3S18 39 6203 16.5 11.5 14.0 2.6 6249 chr3L 22099666 intergenic not near genes chr3L 22102790 intergenic not near genes chr3L 22105915 intergenic not near genes chr3L_39_22100001 chr3L_22100001 RAL-304_100b 2845 chr3L 22130475 22130522 chr3L 22130646 22130693 40 165 10.0 20.0 15.0 2.5 218 chr3L 22130475 intergenic not near genes chr3L 22130584 intergenic not near genes chr3L 22130693 intergenic not near genes chr3L_40_22130001 chr3L_22130001 RAL-304_100b 2846 chr3L 22169428 22169489 chr3L 22169546 22169581 39 116 9.0 15.0 12.0 3.0 153 chr3L 22169428 intron olf413 + chr3L 22169504 intron olf413 + chr3L 22169581 intron olf413 + chr3L_39_22165001 chr3L_22165001 RAL-304_100b 2847 chr3L 22179089 22179119 chr3L 22179176 22179189 21 90 15.0 7.5 11.2 1.7 100 chr3L 22179089 intron olf413 + chr3L 22179139 intron olf413 + chr3L 22179189 intron olf413 + chr3L_21_22175001 chr3L_22175001 RAL-304_100b 2848 chr3L 22328033 22328092 chr3L 22328157 22328194 66 116 20.0 18.0 19.0 3.3 161 chr3L 22328033 intron Ten-m - chr3L 22328114 intron Ten-m - chr3L 22328194 intron Ten-m - chr3L_66_22325001 chr3L_22325001 RAL-304_100b 2849 chr3L 22366687 22366742 chr3L 22366790 22366845 38 101 15.0 11.0 13.0 2.7 158 chr3L 22366687 intron Ten-m - chr3L 22366766 intron Ten-m - chr3L 22366845 intron Ten-m - chr3L_38_22365001 chr3L_22365001 RAL-304_100b 2850 chr3L 22411358 22411398 chr3L 22411447 22411485 38 87 13.5 14.5 14.0 2.5 127 chr3L 22411358 intergenic not near genes chr3L 22411422 intergenic not near genes chr3L 22411485 intergenic not near genes chr3L_38_22410001 chr3L_22410001 RAL-304_100b 2851 chr3L 22447173 22447181 chr3L 22447289 22447297 6 116 32.5 11.5 22.0 0.3 124 chr3L 22447173 intergenic not near genes chr3L 22447235 intergenic not near genes chr3L 22447297 intergenic not near genes chr3L_6_22445001 chr3L_22445001 RAL-304_100b 2852 chr3L 22447182 22447224 chr3L 22447287 22447335 27 112 11.0 9.5 10.2 2.4 153 chr3L 22447182 intergenic not near genes chr3L 22447258 intergenic not near genes chr3L 22447335 intergenic not near genes chr3L_27_22445001 chr3L_22445001 RAL-304_100b 2853 chr3L 22522673 22522729 chr3L 22522775 22522831 47 99 16.5 15.5 16.0 2.8 158 chr3L 22522673 intergenic not near genes chr3L 22522752 intergenic not near genes chr3L 22522831 intergenic not near genes chr3L_47_22520001 chr3L_22520001 RAL-304_100b 2854 chr3L 22554399 22554455 chr3L 22554500 22554556 56 97 15.0 17.0 16.0 3.3 157 chr3L 22554399 intergenic not near genes chr3L 22554478 intergenic not near genes chr3L 22554556 intergenic not near genes chr3L_56_22550001 chr3L_22550001 RAL-304_100b 2855 chr3L 22555745 22555802 chr3L 22563240 22563241 blood 52 7486 14.0 12.5 13.2 3.7 7496 chr3L 22555745 intergenic not near genes chr3L 22559493 intergenic not near genes chr3L 22563241 intergenic not near genes chr3L_52_22555001 chr3L_22555001 RAL-304_100b 2856 chr3L 22569556 22569602 chr3L 22569674 22569725 38 121 8.0 14.0 11.0 3.2 169 chr3L 22569556 intergenic not near genes chr3L 22569640 intergenic not near genes chr3L 22569725 intergenic not near genes chr3L_38_22565001 chr3L_22565001 RAL-304_100b 2857 chr3L 22577597 22577611 chr3L 22582410 22582424 Doc 14 4812 54.5 24.0 39.2 0.3 4827 chr3L 22577597 intergenic not near genes chr3L 22580010 intergenic not near genes chr3L 22582424 3` UTR CG14459 - chr3L_14_22580001 chr3L_22580001 RAL-304_100b 2858 chr3L 22577612 22577647 chr3L 22582408 22582450 Doc 49 4807 23.0 23.0 23.0 2.0 4838 chr3L 22577612 intergenic not near genes chr3L 22580031 intergenic not near genes chr3L 22582450 3` UTR CG14459 - chr3L_49_22580001 chr3L_22580001 RAL-304_100b 2859 chr3L 22617169 22617222 chr3L 22624641 22624683 blood 35 7473 14.5 14.0 14.2 2.3 7514 chr3L 22617169 intron CG14459 - chr3L 22620926 intron CG14459 - chr3L 22624683 intron CG14459 - chr3L_35_22620001 chr3L_22620001 RAL-304_100b 2860 chr3L 22678053 22678059 chr3L 22678171 22678177 4 117 52.0 27.0 39.5 0.1 124 chr3L 22678053 intron CG14457 + chr3L 22678115 intron CG14457 + chr3L 22678177 intron CG14457 + chr3L_4_22675001 chr3L_22675001 RAL-304_100b 2861 chr3L 22678061 22678064 chr3L 22678170 22678177 4 114 49.5 26.0 37.8 0.1 116 chr3L 22678061 intron CG14457 + chr3L 22678119 intron CG14457 + chr3L 22678177 intron CG14457 + chr3L_4_22675001 chr3L_22675001 RAL-304_100b 2862 chr3L 22678065 22678108 chr3L 22678168 22678226 82 106 22.5 23.5 23.0 3.4 161 chr3L 22678065 intron CG14457 + chr3L 22678146 intron CG14457 + chr3L 22678226 intron CG14457 + chr3L_82_22675001 chr3L_22675001 RAL-304_100b 2863 chr3L 22731864 22731888 chr3L 22731969 22731973 20 103 12.5 20.5 16.5 1.1 109 chr3L 22731864 intron CG11367 + chr3L 22731918 intron CG11367 + chr3L 22731973 intron CG11367 + chr3L_20_22730001 chr3L_22730001 RAL-304_100b 2864 chr3L 22747630 22747648 chr3L 22747734 22747748 9 98 37.5 13.5 25.5 0.3 118 chr3L 22747630 exon CG7369 + chr3L 22747689 exon CG7369 + chr3L 22747748 3` UTR CG7369 + chr3L_9_22745001 chr3L_22745001 RAL-304_100b 2865 chr3L 22761363 22761414 chr3L 22766822 22766843 Ivk 26 5457 14.0 16.0 15.0 1.6 5480 chr3L 22761363 intron SPoCk + chr3L 22764103 intron SPoCk + chr3L 22766843 intron SPoCk + chr3L_26_22760001 chr3L_22760001 RAL-304_100b 2866 chr3L 22849432 22849442 chr3L 22849542 22849552 6 110 9.5 25.0 17.2 0.3 120 chr3L 22849432 intergenic not near genes chr3L 22849492 intergenic not near genes chr3L 22849552 intergenic not near genes chr3L_6_22845001 chr3L_22845001 RAL-304_100b 2867 chr3L 22855299 22855301 chr3L 22855407 22855409 4 108 51.5 18.0 34.8 0.1 110 chr3L 22855299 exon CG32459 - chr3L 22855354 exon CG32459 - chr3L 22855409 exon CG32459 - chr3L_4_22855001 chr3L_22855001 RAL-304_100b 2868 chr3L 22855303 22855351 chr3L 22855406 22855449 48 104 23.0 18.0 20.5 2.2 146 chr3L 22855303 exon CG32459 - chr3L 22855376 exon CG32459 - chr3L 22855449 exon CG32459 - chr3L_48_22855001 chr3L_22855001 RAL-304_100b 2869 chr3L 22856587 22856626 chr3L 22856898 22856937 36 309 12.0 11.5 11.8 2.8 350 chr3L 22856587 intergenic not near genes chr3L 22856762 intergenic not near genes chr3L 22856937 intergenic not near genes chr3L_36_22855001 chr3L_22855001 RAL-304_100b 2870 chr3L 22856631 22856639 chr3L 22856894 22856950 14 305 7.0 11.5 9.2 1.4 319 chr3L 22856631 intergenic not near genes chr3L 22856790 intergenic not near genes chr3L 22856950 intergenic not near genes chr3L_14_22855001 chr3L_22855001 RAL-304_100b 2871 chr3L 22865962 22865986 chr3L 22867120 22867144 Doc 17 1158 23.0 14.0 18.5 0.9 1182 chr3L 22865962 intron CG33170 + chr3L 22866553 intron CG33170 + chr3L 22867144 intron CG33170 + chr3L_17_22865001 chr3L_22865001 RAL-304_100b 2872 chr3L 22865987 22866012 chr3L 22867115 22867163 Doc 16 1155 12.0 12.0 12.0 1.2 1176 chr3L 22865987 intron CG33170 + chr3L 22866575 intron CG33170 + chr3L 22867163 intron CG33170 + chr3L_16_22865001 chr3L_22865001 RAL-304_100b 2873 chr3L 22897175 22897187 chr3L 22897282 22897295 10 107 18.0 22.5 20.2 0.5 120 chr3L 22897175 intergenic not near genes chr3L 22897235 intergenic not near genes chr3L 22897295 intergenic not near genes chr3L_10_22895001 chr3L_22895001 RAL-304_100b 2874 chr3L 22897188 22897190 chr3L 22897281 22897298 5 105 18.0 21.0 19.5 0.2 110 chr3L 22897188 intergenic not near genes chr3L 22897243 intergenic not near genes chr3L 22897298 intergenic not near genes chr3L_5_22895001 chr3L_22895001 RAL-304_100b 2875 chr3L 22897192 22897226 chr3L 22897279 22897334 44 103 16.5 20.5 18.5 2.3 142 chr3L 22897192 intergenic not near genes chr3L 22897263 intergenic not near genes chr3L 22897334 intergenic not near genes chr3L_44_22895001 chr3L_22895001 RAL-304_100b 2876 chr3L 9102758 9102804 chr3L 22908066 22908066 5 13805295 85.5 64.0 74.8 0.1 13805308 chr3L 9102758 exon bol - chr3L 16005412 exon mRpS31 + chr3L 22908066 intergenic not near genes chr3L_5_16005001 chr3L_16005001 RAL-304_100b 2877 chr3L 9307795 9307796 chr3L 22908066 22908066 8 13600271 52.5 64.0 58.2 0.1 13600271 chr3L 9307795 intergenic not near genes chr3L 16107930 intron Zn72D - chr3L 22908066 intergenic not near genes chr3L_8_16105001 chr3L_16105001 RAL-304_100b 2878 chr3L 19220632 19220637 chr3L 22908066 22908066 30 3687431 67.0 64.0 65.5 0.5 3687434 chr3L 19220632 intron fz2 - chr3L 21064349 intron siz + chr3L 22908066 intergenic not near genes chr3L_30_21060001 chr3L_21060001 RAL-304_100b 2879 chr3L 20525228 20525229 chr3L 22908066 22908066 13 2382837 40.0 64.0 52.0 0.2 2382838 chr3L 20525228 intron CG4825 - chr3L 21716647 intergenic not near genes chr3L 22908066 intergenic not near genes chr3L_13_21715001 chr3L_21715001 RAL-304_100b 2880 chr3L 22908066 22908066 chr3L 24821492 24821495 26 1913428 65.5 46.5 56.0 0.5 1913429 chr3L 22908066 intergenic not near genes chr3L 23864780 intron CG40470 - chr3L 24821495 intergenic not near genes chr3L_26_23860001 chr3L_23860001 RAL-304_100b 2881 chr3L 9102760 9102787 chr3L 22908067 22908067 6 13805295 95.5 63.5 79.5 0.1 13805307 chr3L 9102760 exon bol - chr3L 16005414 exon mRpS31 + chr3L 22908067 intergenic not near genes chr3L_6_16005001 chr3L_16005001 RAL-304_100b 2882 chr3L 19220633 19220637 chr3L 22908067 22908067 20 3687432 67.0 63.5 65.2 0.3 3687434 chr3L 19220633 intron fz2 - chr3L 21064350 intron siz + chr3L 22908067 intergenic not near genes chr3L_20_21060001 chr3L_21060001 RAL-304_100b 2883 chr3L 20525228 20525230 chr3L 22908067 22908067 16 2382837 40.0 63.5 51.8 0.3 2382839 chr3L 20525228 intron CG4825 - chr3L 21716648 intergenic not near genes chr3L 22908067 intergenic not near genes chr3L_16_21715001 chr3L_21715001 RAL-304_100b 2884 chr3L 22908067 22908067 chr3L 24821492 24821494 11 1913427 65.0 46.5 55.8 0.2 1913427 chr3L 22908067 intergenic not near genes chr3L 23864780 intron CG40470 - chr3L 24821494 intergenic not near genes chr3L_11_23860001 chr3L_23860001 RAL-304_100b 2885 chr3L 22924939 22924954 chr3L 22925024 22925057 5 99 31.5 11.5 21.5 0.2 118 chr3L 22924939 intergenic not near genes chr3L 22924998 intergenic not near genes chr3L 22925057 intergenic not near genes chr3L_5_22920001 chr3L_22920001 RAL-304_100b 2886 chr3L 22924956 22924977 chr3L 22925023 22925080 30 91 17.0 11.5 14.2 2.0 124 chr3L 22924956 intergenic not near genes chr3L 22925018 intergenic not near genes chr3L 22925080 intergenic not near genes chr3L_30_22925001 chr3L_22925001 RAL-304_100b 2887 chr3L 22980567 22980579 chr3L 22980677 22980689 12 109 15.5 17.5 16.5 0.7 122 chr3L 22980567 intergenic not near genes chr3L 22980628 intergenic not near genes chr3L 22980689 intergenic not near genes chr3L_12_22980001 chr3L_22980001 RAL-304_100b 2888 chr3L 22980580 22980597 chr3L 22980660 22980700 11 98 9.5 11.5 10.5 1.0 120 chr3L 22980580 intergenic not near genes chr3L 22980640 intergenic not near genes chr3L 22980700 intergenic not near genes chr3L_11_22980001 chr3L_22980001 RAL-304_100b 2889 chr3L 22989838 22989895 chr3L 22996837 22996894 297 42 6995 8.0 10.5 9.2 4.1 7056 chr3L 22989838 intergenic not near genes chr3L 22993366 intergenic not near genes chr3L 22996894 intergenic not near genes chr3L_42_22990001 chr3L_22990001 RAL-304_100b 2890 chr3L 23165889 23165908 chr3L 23173358 23173372 Quasimodo 7 7469 26.5 13.0 19.8 0.3 7483 chr3L 23165889 intergenic not near genes chr3L 23169630 intergenic not near genes chr3L 23173372 intergenic not near genes chr3L_7_23165001 chr3L_23165001 RAL-304_100b 2891 chr3L 23875502 23875552 chr3L 23875607 23875650 43 104 15.5 12.0 13.8 2.9 148 chr3L 23875502 intron CG40470 - chr3L 23875576 intron CG40470 - chr3L 23875650 intron CG40470 - chr3L_43_23875001 chr3L_23875001 RAL-304_100b 2892 chr3L 24012387 24012430 chr3L 24020753 24020796 roo 20 8365 11.0 11.5 11.2 1.6 8409 chr3L 24012387 intergenic not near genes chr3L 24016592 intergenic not near genes chr3L 24020796 intergenic not near genes chr3L_20_24015001 chr3L_24015001 RAL-304_100b 2893 chr3L 24168769 24168822 chr3L 24176119 24176175 ZAM 44 7347 11.5 21.5 16.5 2.5 7406 chr3L 24168769 intron Snap25 + chr3L 24172472 intron Snap25 + chr3L 24176175 intron Snap25 + chr3L_44_24170001 chr3L_24170001 RAL-304_100b 2894 chr3L 24791874 24791912 chr3L 24796677 24796716 Doc 16 4803 11.0 7.5 9.2 1.6 4842 chr3L 24791874 intergenic not near genes chr3L 24794295 intergenic not near genes chr3L 24796716 intergenic not near genes chr3L_16_24790001 chr3L_24790001 RAL-304_100b 2895 chr3L 18198930 18198931 chr3L 24821492 24821492 9 6622562 0.0 46.5 23.2 0.4 6622562 chr3L 18198930 intergenic not near genes chr3L 21510211 intron M6 + chr3L 24821492 intergenic not near genes chr3L_9_21510001 chr3L_21510001 RAL-304_100b 2896 chr3L 20525228 20525230 chr3L 24821492 24821492 11 4296263 40.0 46.5 43.2 0.2 4296264 chr3L 20525228 intron CG4825 - chr3L 22673360 intron CG14457 + chr3L 24821492 intergenic not near genes chr3L_11_22670001 chr3L_22670001 RAL-304_100b 2897 chr3L 18198930 18198931 chr3L 24821493 24821493 11 6622562 0.0 47.5 23.8 0.4 6622563 chr3L 18198930 intergenic not near genes chr3L 21510212 intron M6 + chr3L 24821493 intergenic not near genes chr3L_11_21510001 chr3L_21510001 RAL-304_100b 2898 chr3L 18198930 18198931 chr3L 24821494 24821494 7 6622563 0.0 47.5 23.8 0.3 6622564 chr3L 18198930 intergenic not near genes chr3L 21510212 intron M6 + chr3L 24821494 intergenic not near genes chr3L_7_21510001 chr3L_21510001 RAL-304_100b 2899 chr3L 20525228 20525230 chr3L 24821494 24821494 5 4296265 40.0 47.5 43.8 0.1 4296266 chr3L 20525228 intron CG4825 - chr3L 22673361 intron CG14457 + chr3L 24821494 intergenic not near genes chr3L_5_22670001 chr3L_22670001 RAL-304_100b 2900 chr3L 24948596 24948624 chr3L 24948715 24948738 8 118 6.0 23.5 14.8 0.5 142 chr3L 24948596 intergenic not near genes chr3L 24948667 intergenic not near genes chr3L 24948738 intergenic not near genes chr3L_8_24945001 chr3L_24945001 RAL-304_100b 2901 chr3L 25331610 25331653 chr3L 25331726 25331759 35 110 19.0 13.0 16.0 2.1 149 chr3L 25331610 intergenic not near genes chr3L 25331684 intergenic not near genes chr3L 25331759 intergenic not near genes chr3L_35_25330001 chr3L_25330001 RAL-304_100b 2902 chr3L 21448026 21448026 chr3L 25486593 25486594 Cr1a 4 4038567 56.0 25.5 40.8 0.1 4038568 chr3L 21448026 3` UTR Syx7 + chr3L 23467310 intergenic not near genes chr3L 25486594 intron CG41343 - chr3L_4_23465001 chr3L_23465001 RAL-304_100b 2903 chr3L 26026712 26026714 chr3L 26026810 26026822 4 101 91.5 80.5 86.0 0.0 110 chr3L 26026712 intergenic not near genes chr3L 26026767 intergenic not near genes chr3L 26026822 intergenic not near genes chr3L_4_26025001 chr3L_26025001 RAL-304_100b 2904 chr3L 23311678 23311683 chr3L 26026738 26026743 G6 4 2715060 95.0 90.0 92.5 0.0 2715065 chr3L 23311678 intergenic not near genes chr3L 24669210 intergenic not near genes chr3L 26026743 intergenic not near genes chr3L_4_24665001 chr3L_24665001 RAL-304_100b 2905 chr3L 26026749 26026752 chr3L 26026864 26026867 4 115 84.0 81.5 82.8 0.0 118 chr3L 26026749 intergenic not near genes chr3L 26026808 intergenic not near genes chr3L 26026867 intergenic not near genes chr3L_4_26025001 chr3L_26025001 RAL-304_100b 2906 chr3L 26290081 26290092 chr3L 26290269 26290288 10 194 28.0 20.0 24.0 0.4 207 chr3L 26290081 intergenic not near genes chr3L 26290184 intergenic not near genes chr3L 26290288 intergenic not near genes chr3L_10_26290001 chr3L_26290001 RAL-304_100b 2907 chr3L 26290095 26290126 chr3L 26290264 26290322 15 188 14.5 17.5 16.0 0.9 227 chr3L 26290095 intergenic not near genes chr3L 26290208 intergenic not near genes chr3L 26290322 intergenic not near genes chr3L_15_26290001 chr3L_26290001 RAL-304_100b 2908 chr3L 27390434 27390709 chr3L 27390680 27390813 26 110 111.0 121.0 116.0 0.2 379 chr3L 27390434 intron Dbp80 + chr3L 27390624 intron Dbp80 + chr3L 27390813 intron Dbp80 + chr3L_26_27390001 chr3L_27390001 RAL-304_100b 2909 chr3R 98954 98955 chr3R 109521 109522 8 10567 8.0 6.5 7.2 1.0 10568 chr3R 98954 intergenic not near genes chr3R 104238 intergenic not near genes chr3R 109522 intergenic not near genes chr3R_8_100001 chr3R_100001 RAL-304_100b 2910 chr3R 97106 97106 chr3R 99846 99849 7 2735 19.5 22.0 20.8 0.3 2743 chr3R 97106 intergenic not near genes chr3R 98478 intergenic not near genes chr3R 99849 intergenic not near genes chr3R_7_95001 chr3R_95001 RAL-304_100b 2911 chr3R 1252409 1252450 chr3R 1266233 1266237 297 5 13813 50.0 34.0 42.0 0.1 13828 chr3R 1252409 intergenic not near genes chr3R 1259323 intergenic not near genes chr3R 1266237 intergenic not near genes chr3R_5_1255001 chr3R_1255001 RAL-304_100b 2912 chr3R 1521167 1521183 chr3R 1521249 1521296 16 107 54.0 50.0 52.0 0.3 129 chr3R 1521167 intergenic not near genes chr3R 1521232 intergenic not near genes chr3R 1521296 intergenic not near genes chr3R_16_1520001 chr3R_1520001 RAL-304_100b 2913 chr3R 1867169 1867174 chr3R 1954898 1954920 Doc3-element 5 87748 60.0 18.5 39.2 0.1 87751 chr3R 1867169 intron CG42623 + chr3R 1911044 intron CG42623 + chr3R 1954920 intergenic not near genes chr3R_5_1910001 chr3R_1910001 RAL-304_100b 2914 chr3R 2424355 2424357 chr3R 8200138 8200152 4 5775790 31.0 19.5 25.2 0.2 5775797 chr3R 2424355 intergenic not near genes chr3R 5312254 intron mtd - chr3R 8200152 intergenic not near genes chr3R_4_5310001 chr3R_5310001 RAL-304_100b 2915 chr3R 2424361 2424365 chr3R 17991925 17991929 4 15567564 28.0 22.5 25.2 0.2 15567568 chr3R 2424361 intergenic not near genes chr3R 10208145 intron,intron Syn +,Timp - chr3R 17991929 intron cpo + chr3R_4_10205001 chr3R_10205001 RAL-304_100b 2916 chr3R 1511856 1511859 chr3R 2516750 2516774 297 5 1004904 31.0 68.5 49.8 0.1 1004918 chr3R 1511856 intergenic not near genes chr3R 2014315 intergenic not near genes chr3R 2516774 intergenic not near genes chr3R_5_2010001 chr3R_2010001 RAL-304_100b 2917 chr3R 2534110 2534119 chr3R 2541704 2541713 5 7593 89.5 59.0 74.2 0.1 7603 chr3R 2534110 intergenic not near genes chr3R 2537912 intergenic not near genes chr3R 2541713 intergenic not near genes chr3R_5_2535001 chr3R_2535001 RAL-304_100b 2918 chr3R 2534121 2534164 chr3R 2541700 2541728 32 7573 63.0 58.0 60.5 0.5 7607 chr3R 2534121 intergenic not near genes chr3R 2537924 intergenic not near genes chr3R 2541728 intergenic not near genes chr3R_32_2535001 chr3R_2535001 RAL-304_100b 2919 chr3R 2556879 2556883 chr3R 2557597 2557642 26 712 46.0 49.0 47.5 0.5 763 chr3R 2556879 intron CG41056 - chr3R 2557260 intron CG41056 - chr3R 2557642 intron CG41056 - chr3R_26_2555001 chr3R_2555001 RAL-304_100b 2920 chr3R 3178696 3178714 chr3R 3595192 3595218 6 416498 32.0 51.5 41.8 0.1 416522 chr3R 3178696 intron CG42617 - chr3R 3386957 intergenic not near genes chr3R 3595218 intergenic not near genes chr3R_6_3385001 chr3R_3385001 RAL-304_100b 2921 chr3R 3916190 3916207 chr3R 3916318 3916324 4 127 29.5 30.5 30.0 0.1 134 chr3R 3916190 intergenic not near genes chr3R 3916257 intergenic not near genes chr3R 3916324 intergenic not near genes chr3R_4_3915001 chr3R_3915001 RAL-304_100b 2922 chr3R 4063784 4063837 chr3R 4069089 4069097 13 5295 20.0 48.0 34.0 0.4 5313 chr3R 4063784 intergenic not near genes chr3R 4066440 intergenic not near genes chr3R 4069097 intergenic not near genes chr3R_13_4065001 chr3R_4065001 RAL-304_100b 2923 chr3R 3989286 3989307 chr3R 4068940 4068951 mdg1 8 79646 48.0 34.5 41.2 0.2 79665 chr3R 3989286 intergenic not near genes chr3R 4029118 intergenic not near genes chr3R 4068951 intergenic not near genes chr3R_8_4025001 chr3R_4025001 RAL-304_100b 2924 chr3R 4105016 4105068 chr3R 4110245 4110297 copia 11 5222 12.5 16.0 14.2 0.7 5281 chr3R 4105016 intergenic not near genes chr3R 4107656 intergenic not near genes chr3R 4110297 intergenic not near genes chr3R_11_4105001 chr3R_4105001 RAL-304_100b 2925 chr3R 4132881 4132928 chr3R 4133060 4133107 18 178 5.5 8.0 6.8 2.3 226 chr3R 4132881 5` UTR Gfat1 + chr3R 4132994 intron Gfat1 + chr3R 4133107 intron Gfat1 + chr3R_18_4130001 chr3R_4130001 RAL-304_100b 2926 chr3R 4206044 4206097 chr3R 4211644 4211697 mdg3 30 5595 15.5 9.5 12.5 2.2 5653 chr3R 4206044 intron CG14636 - chr3R 4208870 intron CG14636 - chr3R 4211697 intron CG14636 - chr3R_30_4205001 chr3R_4205001 RAL-304_100b 2927 chr3R 4366735 4366744 chr3R 4375143 4375152 roo 5 8407 16.0 8.0 12.0 0.4 8417 chr3R 4366735 3` UTR CG1090 + chr3R 4370944 intergenic not near genes chr3R 4375152 5` UTR CR44922 + chr3R_5_4370001 chr3R_4370001 RAL-304_100b 2928 chr3R 4366745 4366787 chr3R 4375142 4375154 roo 24 8403 5.0 8.0 6.5 3.2 8409 chr3R 4366745 3` UTR CG1090 + chr3R 4370950 intergenic not near genes chr3R 4375154 5` UTR CR44922 + chr3R_24_4370001 chr3R_4370001 RAL-304_100b 2929 chr3R 4408388 4408443 chr3R 4412717 4412737 Juan 35 4324 17.5 16.5 17.0 1.9 4349 chr3R 4408388 intron CG32944 - chr3R 4410562 intron CG32944 - chr3R 4412737 intron CG32944 - chr3R_35_4410001 chr3R_4410001 RAL-304_100b 2930 chr3R 4512378 4512393 chr3R 4512614 4512614 5 233 23.0 0.0 11.5 0.4 236 chr3R 4512378 intron CG34357 - chr3R 4512496 intron CG34357 - chr3R 4512614 intron CG34357 - chr3R_5_4510001 chr3R_4510001 RAL-304_100b 2931 chr3R 4581953 4581978 chr3R 4585314 4585339 17 3362 60.0 88.5 74.2 0.2 3386 chr3R 4581953 intergenic not near genes chr3R 4583646 intergenic not near genes chr3R 4585339 3` UTR CR45558 - chr3R_17_4580001 chr3R_4580001 RAL-304_100b 2932 chr3R 4581949 4582002 chr3R 4585340 4585364 12 3365 71.0 72.5 71.8 0.2 3415 chr3R 4581949 intergenic not near genes chr3R 4583656 intergenic not near genes chr3R 4585364 3` UTR CR45558 - chr3R_12_4580001 chr3R_4580001 RAL-304_100b 2933 chr3R 4609524 4609581 chr3R 4610713 4610755 1360 53 1187 13.5 16.0 14.8 3.4 1231 chr3R 4609524 intergenic not near genes chr3R 4610140 intergenic not near genes chr3R 4610755 intergenic not near genes chr3R_53_4610001 chr3R_4610001 RAL-304_100b 2934 chr3R 4657981 4658035 chr3R 4658423 4658477 11 442 4.0 6.0 5.0 1.8 496 chr3R 4657981 3` UTR spartin + chr3R 4658229 intergenic spartin + chr3R 4658477 intergenic spartin + chr3R_11_4655001 chr3R_4655001 RAL-304_100b 2935 chr3R 4722317 4722374 chr3R 4722479 4722536 36 160 9.0 11.0 10.0 3.3 219 chr3R 4722317 intron Nep2 - chr3R 4722426 intron Nep2 - chr3R 4722536 intron Nep2 - chr3R_36_4720001 chr3R_4720001 RAL-304_100b 2936 chr3R 4739093 4739111 chr3R 4739195 4739203 14 100 26.0 10.5 18.2 0.7 110 chr3R 4739093 intron tacc - chr3R 4739148 intron tacc - chr3R 4739203 intron tacc - chr3R_14_4735001 chr3R_4735001 RAL-304_100b 2937 chr3R 4739118 4739147 chr3R 4739194 4739239 33 95 13.0 12.0 12.5 2.4 121 chr3R 4739118 intron tacc - chr3R 4739178 intron tacc - chr3R 4739239 intron tacc - chr3R_33_4735001 chr3R_4735001 RAL-304_100b 2938 chr3R 4769133 4769191 chr3R 4769236 4769294 55 100 21.5 15.0 18.2 2.9 161 chr3R 4769133 intron,intron atms +,CG44098 - chr3R 4769214 intron,intron atms +,CG44098 - chr3R 4769294 intron,intron atms +,CG44098 - chr3R_55_4765001 chr3R_4765001 RAL-304_100b 2939 chr3R 4887453 4887486 chr3R 4894855 4894858 rover 29 7398 22.5 14.0 18.2 1.5 7405 chr3R 4887453 intergenic not near genes chr3R 4891156 intergenic not near genes chr3R 4894858 intergenic not near genes chr3R_29_4890001 chr3R_4890001 RAL-304_100b 2940 chr3R 4887488 4887512 chr3R 4894854 4894909 rover 17 7392 14.0 13.5 13.8 1.1 7421 chr3R 4887488 intergenic not near genes chr3R 4891198 intergenic not near genes chr3R 4894909 intergenic not near genes chr3R_17_4890001 chr3R_4890001 RAL-304_100b 2941 chr3R 4896272 4896324 chr3R 4896390 4896409 35 115 8.0 11.0 9.5 3.3 137 chr3R 4896272 intergenic CR45580 + chr3R 4896340 intergenic CR45580 + chr3R 4896409 intergenic CR45580 + chr3R_35_4895001 chr3R_4895001 RAL-304_100b 2942 chr3R 4896686 4896721 chr3R 4896789 4896824 40 98 17.0 21.0 19.0 2.0 138 chr3R 4896686 5` UTR CR45580 + chr3R 4896755 5` UTR CR45580 + chr3R 4896824 5` UTR CR45580 + chr3R_40_4895001 chr3R_4895001 RAL-304_100b 2943 chr3R 4948354 4948391 chr3R 4949001 4949038 25 646 44.0 39.5 41.8 0.6 684 chr3R 4948354 intergenic snRNA:U1:82Eb -,UbcD6 - chr3R 4948696 intergenic UbcD6 - chr3R 4949038 3` UTR UbcD6 - chr3R_25_4945001 chr3R_4945001 RAL-304_100b 2944 chr3R 4965981 4966031 chr3R 4966098 4966148 25 115 12.5 10.5 11.5 2.0 167 chr3R 4965981 intron CG1124 + chr3R 4966064 intron CG1124 + chr3R 4966148 intron CG1124 + chr3R_25_4965001 chr3R_4965001 RAL-304_100b 2945 chr3R 4972940 4972943 chr3R 4973084 4973087 jockey 5 144 26.0 11.5 18.8 0.3 147 chr3R 4972940 intergenic not near genes chr3R 4973014 intergenic not near genes chr3R 4973087 intergenic not near genes chr3R_5_4970001 chr3R_4970001 RAL-304_100b 2946 chr3R 4984903 4984912 chr3R 4984995 4985041 11 122 23.0 19.5 21.2 0.5 138 chr3R 4984903 3` UTR CR43424 - chr3R 4984972 3` UTR CR43424 - chr3R 4985041 3` UTR CR43424 - chr3R_11_4980001 chr3R_4980001 RAL-304_100b 2947 chr3R 4984913 4984920 chr3R 4984989 4985049 11 119 17.0 17.0 17.0 0.6 136 chr3R 4984913 3` UTR CR43424 - chr3R 4984981 3` UTR CR43424 - chr3R 4985049 3` UTR CR43424 - chr3R_11_4980001 chr3R_4980001 RAL-304_100b 2948 chr3R 5045821 5045877 chr3R 5052947 5053004 HMS-Beagle 25 7126 16.0 7.0 11.5 2.0 7183 chr3R 5045821 3` UTR CR43635 - chr3R 5049412 intergenic not near genes chr3R 5053004 intergenic CR45588 - chr3R_25_5045001 chr3R_5045001 RAL-304_100b 2949 chr3R 5067954 5068011 chr3R 5073496 5073513 mdg3 34 5540 13.0 8.5 10.8 2.9 5559 chr3R 5067954 intergenic not near genes chr3R 5070734 intergenic not near genes chr3R 5073513 intergenic not near genes chr3R_34_5070001 chr3R_5070001 RAL-304_100b 2950 chr3R 5104365 5104424 chr3R 5104695 5104755 43 327 14.0 12.5 13.2 3.0 390 chr3R 5104365 intergenic not near genes chr3R 5104560 intergenic not near genes chr3R 5104755 intergenic not near genes chr3R_43_5100001 chr3R_5100001 RAL-304_100b 2951 chr3R 5113539 5113572 chr3R 5113644 5113677 36 104 23.5 17.0 20.2 1.7 138 chr3R 5113539 intergenic not near genes chr3R 5113608 intergenic not near genes chr3R 5113677 intergenic not near genes chr3R_36_5110001 chr3R_5110001 RAL-304_100b 2952 chr3R 5162912 5162966 chr3R 5163089 5163143 44 175 8.5 10.0 9.2 4.3 231 chr3R 5162912 intron dpr16 + chr3R 5163028 intron dpr16 + chr3R 5163143 intron dpr16 + chr3R_44_5160001 chr3R_5160001 RAL-304_100b 2953 chr3R 5198944 5198995 chr3R 5199050 5199104 40 106 15.0 12.0 13.5 2.8 160 chr3R 5198944 intron cno - chr3R 5199024 intron cno - chr3R 5199104 intron cno - chr3R_40_5195001 chr3R_5195001 RAL-304_100b 2954 chr3R 5255217 5255273 chr3R 5255353 5255364 77 136 22.0 15.0 18.5 3.9 147 chr3R 5255217 exon CG1113 + chr3R 5255290 exon CG1113 + chr3R 5255364 exon CG1113 + chr3R_77_5255001 chr3R_5255001 RAL-304_100b 2955 chr3R 5278062 5278121 chr3R 5278168 5278212 45 104 10.5 10.5 10.5 3.9 150 chr3R 5278062 intron mtd - chr3R 5278137 intron mtd - chr3R 5278212 intron mtd - chr3R_45_5275001 chr3R_5275001 RAL-304_100b 2956 chr3R 5282967 5282975 chr3R 5283073 5283075 5 105 33.0 30.5 31.8 0.2 108 chr3R 5282967 intron mtd - chr3R 5283021 intron mtd - chr3R 5283075 intron mtd - chr3R_5_5280001 chr3R_5280001 RAL-304_100b 2957 chr3R 5282978 5282992 chr3R 5283069 5283098 13 98 27.5 28.5 28.0 0.4 120 chr3R 5282978 intron mtd - chr3R 5283038 intron mtd - chr3R 5283098 intron mtd - chr3R_13_5280001 chr3R_5280001 RAL-304_100b 2958 chr3R 5437938 5437991 chr3R 5438073 5438106 50 131 9.5 12.0 10.8 4.2 168 chr3R 5437938 intron CG14669 + chr3R 5438022 intron CG14669 + chr3R 5438106 intron CG14669 + chr3R_50_5435001 chr3R_5435001 RAL-304_100b 2959 chr3R 5445934 5445994 chr3R 5452419 5452479 Burdock 51 6484 13.0 12.0 12.5 3.8 6545 chr3R 5445934 intron CG14669 + chr3R 5449206 intron CG14669 + chr3R 5452479 intron CG14669 + chr3R_51_5445001 chr3R_5445001 RAL-304_100b 2960 chr3R 5497047 5497054 chr3R 5497891 5497898 7 845 119.5 177.0 148.2 0.0 851 chr3R 5497047 intron CG31547 - chr3R 5497472 intron CG31547 - chr3R 5497898 intron CG31547 - chr3R_7_5495001 chr3R_5495001 RAL-304_100b 2961 chr3R 5497042 5497063 chr3R 5497902 5497947 54 853 117.0 167.0 142.0 0.4 905 chr3R 5497042 intron CG31547 - chr3R 5497494 intron CG31547 - chr3R 5497947 intron CG31547 - chr3R_54_5495001 chr3R_5495001 RAL-304_100b 2962 chr3R 5502607 5502612 chr3R 5502676 5502716 6 96 18.0 21.0 19.5 0.3 109 chr3R 5502607 5` UTR CG31547 - chr3R 5502662 5` UTR CG31547 - chr3R 5502716 intergenic CG31547 - chr3R_6_5500001 chr3R_5500001 RAL-304_100b 2963 chr3R 5502613 5502619 chr3R 5502675 5502723 11 94 12.0 20.5 16.2 0.6 110 chr3R 5502613 5` UTR CG31547 - chr3R 5502668 5` UTR CG31547 - chr3R 5502723 intergenic CG31547 - chr3R_11_5500001 chr3R_5500001 RAL-304_100b 2964 chr3R 5515112 5515123 chr3R 5515214 5515225 11 102 33.0 17.0 25.0 0.4 113 chr3R 5515112 intron Nmdar1 - chr3R 5515168 intron Nmdar1 - chr3R 5515225 intron Nmdar1 - chr3R_11_5515001 chr3R_5515001 RAL-304_100b 2965 chr3R 5515125 5515138 chr3R 5515212 5515240 14 98 25.5 16.5 21.0 0.6 115 chr3R 5515125 intron Nmdar1 - chr3R 5515182 intron Nmdar1 - chr3R 5515240 intron Nmdar1 - chr3R_14_5515001 chr3R_5515001 RAL-304_100b 2966 chr3R 5515140 5515167 chr3R 5515211 5515269 28 96 11.0 16.0 13.5 1.9 129 chr3R 5515140 intron Nmdar1 - chr3R 5515204 intron Nmdar1 - chr3R 5515269 intron Nmdar1 - chr3R_28_5515001 chr3R_5515001 RAL-304_100b 2967 chr3R 5726071 5726092 chr3R 5726258 5726279 7 187 15.0 7.5 11.2 0.6 208 chr3R 5726071 intergenic not near genes chr3R 5726175 intergenic not near genes chr3R 5726279 intergenic not near genes chr3R_7_5725001 chr3R_5725001 RAL-304_100b 2968 chr3R 5726093 5726120 chr3R 5726250 5726307 13 183 8.0 6.5 7.2 1.6 214 chr3R 5726093 intergenic not near genes chr3R 5726200 intergenic not near genes chr3R 5726307 intergenic not near genes chr3R_13_5725001 chr3R_5725001 RAL-304_100b 2969 chr3R 5745989 5746045 chr3R 5746255 5746311 pogo 57 264 16.5 18.5 17.5 3.1 322 chr3R 5745989 3` UTR Madm + chr3R 5746150 3` UTR Madm + chr3R 5746311 3` UTR Madm + chr3R_57_5745001 chr3R_5745001 RAL-304_100b 2970 chr3R 5746990 5747015 chr3R 5753206 5753231 diver 11 6213 16.0 12.0 14.0 0.7 6241 chr3R 5746990 intergenic Madm + chr3R 5750110 intergenic not near genes chr3R 5753231 intergenic CG2091 - chr3R_11_5750001 chr3R_5750001 RAL-304_100b 2971 chr3R 5747016 5747045 chr3R 5753202 5753261 diver 21 6212 8.5 10.0 9.2 2.1 6245 chr3R 5747016 intergenic Madm + chr3R 5750138 intergenic not near genes chr3R 5753261 intergenic CG2091 - chr3R_21_5750001 chr3R_5750001 RAL-304_100b 2972 chr3R 5772351 5772408 chr3R 5772534 5772591 71 181 13.5 16.5 15.0 4.4 240 chr3R 5772351 intron CG2082 - chr3R 5772471 intron CG2082 - chr3R 5772591 intron CG2082 - chr3R_71_5770001 chr3R_5770001 RAL-304_100b 2973 chr3R 5809088 5809144 chr3R 5809354 5809410 pogo 50 262 14.5 11.0 12.8 3.6 322 chr3R 5809088 3` UTR CG11000 + chr3R 5809249 3` UTR CG11000 + chr3R 5809410 3` UTR CG11000 + chr3R_50_5805001 chr3R_5805001 RAL-304_100b 2974 chr3R 5822357 5822393 chr3R 5823549 5823585 1360 34 1191 23.0 18.5 20.8 1.6 1228 chr3R 5822357 3` UTR CG2023 - chr3R 5822971 3` UTR CG2023 - chr3R 5823585 3` UTR CG2023 - chr3R_34_5820001 chr3R_5820001 RAL-304_100b 2975 chr3R 5822398 5822411 chr3R 5823553 5823583 1360 14 1184 11.5 20.0 15.8 0.8 1185 chr3R 5822398 3` UTR CG2023 - chr3R 5822990 3` UTR CG2023 - chr3R 5823583 3` UTR CG2023 - chr3R_14_5820001 chr3R_5820001 RAL-304_100b 2976 chr3R 5893146 5893204 chr3R 5893343 5893401 43 194 12.5 15.0 13.8 2.9 255 chr3R 5893146 intron CG34113 - chr3R 5893274 intron CG34113 - chr3R 5893401 intron CG34113 - chr3R_43_5890001 chr3R_5890001 RAL-304_100b 2977 chr3R 5927538 5927556 chr3R 5927803 5927821 pogo 5 265 32.0 16.0 24.0 0.2 283 chr3R 5927538 intron CG34113 - chr3R 5927680 intron CG34113 - chr3R 5927821 intron CG34113 - chr3R_5_5925001 chr3R_5925001 RAL-304_100b 2978 chr3R 5927557 5927590 chr3R 5927799 5927837 pogo 40 255 14.0 14.5 14.2 2.6 280 chr3R 5927557 intron CG34113 - chr3R 5927697 intron CG34113 - chr3R 5927837 intron CG34113 - chr3R_40_5925001 chr3R_5925001 RAL-304_100b 2979 chr3R 5988880 5988887 chr3R 5989104 5989113 7 226 39.5 16.5 28.0 0.2 233 chr3R 5988880 intergenic CR44927 + chr3R 5988996 intergenic CR44927 + chr3R 5989113 intergenic CR44927 + chr3R_7_5985001 chr3R_5985001 RAL-304_100b 2980 chr3R 5988888 5988903 chr3R 5989100 5989129 17 222 31.5 15.0 23.2 0.7 241 chr3R 5988888 intergenic CR44927 + chr3R 5989008 intergenic CR44927 + chr3R 5989129 intergenic CR44927 + chr3R_17_5985001 chr3R_5985001 RAL-304_100b 2981 chr3R 5988906 5988933 chr3R 5989096 5989145 24 221 14.5 11.5 13.0 1.7 239 chr3R 5988906 intergenic CR44927 + chr3R 5989026 intergenic CR44927 + chr3R 5989145 intergenic CR44927 + chr3R_24_5985001 chr3R_5985001 RAL-304_100b 2982 chr3R 6015566 6015581 chr3R 6015668 6015683 12 101 4.0 36.0 20.0 0.6 117 chr3R 6015566 intergenic not near genes chr3R 6015624 intergenic not near genes chr3R 6015683 intergenic not near genes chr3R_12_6015001 chr3R_6015001 RAL-304_100b 2983 chr3R 6015944 6015994 chr3R 6024470 6024520 Tirant 65 8522 15.5 16.0 15.8 3.9 8576 chr3R 6015944 intergenic not near genes chr3R 6020232 intergenic not near genes chr3R 6024520 intergenic not near genes chr3R_65_6020001 chr3R_6020001 RAL-304_100b 2984 chr3R 6061151 6061162 chr3R 6061293 6061304 13 142 97.0 23.5 60.2 0.2 153 chr3R 6061151 intergenic not near genes chr3R 6061228 intergenic not near genes chr3R 6061304 intergenic not near genes chr3R_13_6060001 chr3R_6060001 RAL-304_100b 2985 chr3R 6061164 6061203 chr3R 6061290 6061345 51 136 57.5 24.0 40.8 1.2 181 chr3R 6061164 intergenic not near genes chr3R 6061254 intergenic not near genes chr3R 6061345 intergenic not near genes chr3R_51_6060001 chr3R_6060001 RAL-304_100b 2986 chr3R 6060855 6060876 chr3R 6061214 6061264 41 362 91.5 70.0 80.8 0.5 409 chr3R 6060855 intergenic not near genes chr3R 6061060 intergenic not near genes chr3R 6061264 intergenic not near genes chr3R_41_6060001 chr3R_6060001 RAL-304_100b 2987 chr3R 6076493 6076540 chr3R 6076621 6076668 28 125 12.5 0.0 6.2 3.9 175 chr3R 6076493 intergenic Or83c - chr3R 6076580 intergenic Or83c - chr3R 6076668 intergenic Or83c - chr3R_28_6075001 chr3R_6075001 RAL-304_100b 2988 chr3R 6090420 6090420 chr3R 10451877 10451877 6 4361457 62.0 83.5 72.8 0.1 4361457 chr3R 6090420 intron Gasp - chr3R 8271148 intergenic not near genes chr3R 10451877 intergenic not near genes chr3R_6_8270001 chr3R_8270001 RAL-304_100b 2989 chr3R 6119115 6119156 chr3R 6119210 6119267 19 107 4.5 9.5 7.0 2.4 152 chr3R 6119115 intergenic not near genes chr3R 6119191 intergenic not near genes chr3R 6119267 intergenic not near genes chr3R_19_6115001 chr3R_6115001 RAL-304_100b 2990 chr3R 6121166 6121180 chr3R 6121408 6121423 BS 9 243 0.0 14.5 7.2 1.1 257 chr3R 6121166 intergenic not near genes chr3R 6121294 intergenic not near genes chr3R 6121423 intergenic not near genes chr3R_9_6120001 chr3R_6120001 RAL-304_100b 2991 chr3R 6121182 6121183 chr3R 6121406 6121426 BS 5 239 0.0 14.5 7.2 0.6 244 chr3R 6121182 intergenic not near genes chr3R 6121304 intergenic not near genes chr3R 6121426 intergenic not near genes chr3R_5_6120001 chr3R_6120001 RAL-304_100b 2992 chr3R 6158483 6158536 chr3R 6167091 6167144 Tirant 29 8606 19.5 13.0 16.2 1.7 8661 chr3R 6158483 intergenic not near genes chr3R 6162814 intergenic not near genes chr3R 6167144 intergenic CG1077 + chr3R_29_6160001 chr3R_6160001 RAL-304_100b 2993 chr3R 6171123 6171181 chr3R 6171510 6171568 22 384 8.0 5.0 6.5 2.9 445 chr3R 6171123 intergenic not near genes chr3R 6171346 intergenic not near genes chr3R 6171568 intergenic not near genes chr3R_22_6170001 chr3R_6170001 RAL-304_100b 2994 chr3R 6175147 6175207 chr3R 6182444 6182472 HMS-Beagle2 47 7290 8.0 9.5 8.8 4.8 7325 chr3R 6175147 intergenic Osi1 + chr3R 6178810 intron CR45194 + chr3R 6182472 intergenic CR45194 + chr3R_47_6175001 chr3R_6175001 RAL-304_100b 2995 chr3R 6226595 6226604 chr3R 6226708 6226717 8 113 42.5 16.5 29.5 0.3 122 chr3R 6226595 intergenic not near genes chr3R 6226656 intergenic not near genes chr3R 6226717 intergenic not near genes chr3R_8_6225001 chr3R_6225001 RAL-304_100b 2996 chr3R 6226606 6226649 chr3R 6226707 6226753 43 109 23.0 16.0 19.5 2.1 147 chr3R 6226606 intergenic not near genes chr3R 6226680 intergenic not near genes chr3R 6226753 intergenic not near genes chr3R_43_6225001 chr3R_6225001 RAL-304_100b 2997 chr3R 6414055 6414061 chr3R 6414154 6414157 4 98 53.0 52.5 52.8 0.1 102 chr3R 6414055 intron gpp + chr3R 6414106 intron gpp + chr3R 6414157 intron gpp + chr3R_4_6410001 chr3R_6410001 RAL-304_100b 2998 chr3R 6420968 6420998 chr3R 6421104 6421130 4 132 4.0 4.0 4.0 0.8 162 chr3R 6420968 intron gpp + chr3R 6421049 intron gpp + chr3R 6421130 intron gpp + chr3R_4_6420001 chr3R_6420001 RAL-304_100b 2999 chr3R 6461552 6461613 chr3R 6461658 6461718 25 104 4.5 5.0 4.8 4.3 166 chr3R 6461552 intergenic not near genes chr3R 6461635 intergenic not near genes chr3R 6461718 intergenic not near genes chr3R_25_6460001 chr3R_6460001 RAL-304_100b 3000 chr3R 6510012 6510050 chr3R 6515105 6515156 jockey 28 5102 12.0 5.0 8.5 2.9 5144 chr3R 6510012 intergenic not near genes chr3R 6512584 intergenic not near genes chr3R 6515156 intergenic not near genes chr3R_28_6510001 chr3R_6510001 RAL-304_100b 3001 chr3R 6519095 6519143 chr3R 6519228 6519279 19 132 11.5 9.0 10.2 1.7 184 chr3R 6519095 intergenic not near genes chr3R 6519187 intergenic not near genes chr3R 6519279 intergenic not near genes chr3R_19_6515001 chr3R_6515001 RAL-304_100b 3002 chr3R 6538178 6538233 chr3R 6538301 6538356 63 115 17.0 19.5 18.2 3.3 178 chr3R 6538178 intron dpr11 - chr3R 6538267 intron dpr11 - chr3R 6538356 exon dpr11 - chr3R_63_6535001 chr3R_6535001 RAL-304_100b 3003 chr3R 6550298 6550351 chr3R 6550404 6550457 43 102 16.5 16.0 16.2 2.5 159 chr3R 6550298 intron dpr11 - chr3R 6550378 intron dpr11 - chr3R 6550457 intron dpr11 - chr3R_43_6550001 chr3R_6550001 RAL-304_100b 3004 chr3R 6551092 6551101 chr3R 6551211 6551220 10 119 44.5 20.5 32.5 0.3 128 chr3R 6551092 intron dpr11 - chr3R 6551156 intron dpr11 - chr3R 6551220 intron dpr11 - chr3R_10_6550001 chr3R_6550001 RAL-304_100b 3005 chr3R 6551102 6551107 chr3R 6551210 6551211 7 115 39.0 20.0 29.5 0.2 109 chr3R 6551102 intron dpr11 - chr3R 6551156 intron dpr11 - chr3R 6551211 intron dpr11 - chr3R_7_6550001 chr3R_6550001 RAL-304_100b 3006 chr3R 6551109 6551119 chr3R 6551206 6551238 21 116 32.0 17.5 24.8 0.8 129 chr3R 6551109 intron dpr11 - chr3R 6551174 intron dpr11 - chr3R 6551238 intron dpr11 - chr3R_21_6550001 chr3R_6550001 RAL-304_100b 3007 chr3R 6551120 6551141 chr3R 6551201 6551260 24 110 19.5 15.0 17.2 1.3 140 chr3R 6551120 intron dpr11 - chr3R 6551190 intron dpr11 - chr3R 6551260 intron dpr11 - chr3R_24_6550001 chr3R_6550001 RAL-304_100b 3008 chr3R 6561928 6561980 chr3R 6562037 6562079 23 108 11.0 5.0 8.0 2.6 151 chr3R 6561928 intron dpr11 - chr3R 6562004 intron dpr11 - chr3R 6562079 intron dpr11 - chr3R_23_6560001 chr3R_6560001 RAL-304_100b 3009 chr3R 6639886 6639906 chr3R 6639989 6640009 29 102 35.0 0.0 17.5 1.6 123 chr3R 6639886 intergenic not near genes chr3R 6639948 intergenic not near genes chr3R 6640009 intergenic not near genes chr3R_29_6635001 chr3R_6635001 RAL-304_100b 3010 chr3R 6639907 6639933 chr3R 6639988 6640011 19 91 22.0 0.0 11.0 1.6 104 chr3R 6639907 intergenic not near genes chr3R 6639959 intergenic not near genes chr3R 6640011 intergenic not near genes chr3R_19_6635001 chr3R_6635001 RAL-304_100b 3011 chr3R 6688014 6688050 chr3R 6688201 6688232 18 186 6.0 14.0 10.0 1.6 218 chr3R 6688014 3` UTR Ccp84Ag + chr3R 6688123 intergenic Ccp84Ag + chr3R 6688232 intergenic Ccp84Ag + chr3R_18_6685001 chr3R_6685001 RAL-304_100b 3012 chr3R 6697978 6698038 chr3R 6698082 6698111 36 101 15.0 17.5 16.2 2.1 133 chr3R 6697978 intergenic not near genes chr3R 6698044 intergenic not near genes chr3R 6698111 intergenic not near genes chr3R_36_6695001 chr3R_6695001 RAL-304_100b 3013 chr3R 6717701 6717707 chr3R 6717826 6717869 9 149 1.0 15.0 8.0 1.0 168 chr3R 6717701 intron pb - chr3R 6717785 intron pb - chr3R 6717869 intron pb - chr3R_9_6715001 chr3R_6715001 RAL-304_100b 3014 chr3R 6737476 6737526 chr3R 6739284 6739338 Doc 21 1808 19.0 10.5 14.8 1.3 1862 chr3R 6737476 intron pb - chr3R 6738407 intron pb - chr3R 6739338 intron pb - chr3R_21_6735001 chr3R_6735001 RAL-304_100b 3015 chr3R 6743135 6743144 chr3R 6743243 6743252 6 108 9.0 13.0 11.0 0.5 117 chr3R 6743135 3` UTR zen2 - chr3R 6743194 3` UTR zen2 - chr3R 6743252 exon zen2 - chr3R_6_6740001 chr3R_6740001 RAL-304_100b 3016 chr3R 6743145 6743165 chr3R 6743238 6743242 13 104 6.0 10.5 8.2 1.4 97 chr3R 6743145 3` UTR zen2 - chr3R 6743194 3` UTR zen2 - chr3R 6743242 3` UTR zen2 - chr3R_13_6740001 chr3R_6740001 RAL-304_100b 3017 chr3R 6766844 6766850 chr3R 6766946 6766952 7 102 3.5 29.0 16.2 0.4 108 chr3R 6766844 intergenic CR44930 +,CR42721 + chr3R 6766898 intergenic CR42721 +,CR44930 + chr3R 6766952 intergenic CR42721 +,CR44930 + chr3R_7_6765001 chr3R_6765001 RAL-304_100b 3018 chr3R 6773535 6773559 chr3R 6773644 6773673 25 107 37.0 12.0 24.5 1.0 138 chr3R 6773535 intron CR42721 + chr3R 6773604 intron CR42721 + chr3R 6773673 intron CR42721 + chr3R_25_6770001 chr3R_6770001 RAL-304_100b 3019 chr3R 6773560 6773583 chr3R 6773643 6773697 44 104 20.0 12.0 16.0 2.6 137 chr3R 6773560 intron CR42721 + chr3R 6773628 intron CR42721 + chr3R 6773697 intron CR42721 + chr3R_44_6770001 chr3R_6770001 RAL-304_100b 3020 chr3R 6780425 6780483 chr3R 6780533 6780548 29 105 7.5 7.0 7.2 3.5 123 chr3R 6780425 intergenic not near genes chr3R 6780486 intergenic not near genes chr3R 6780548 intergenic not near genes chr3R_29_6780001 chr3R_6780001 RAL-304_100b 3021 chr3R 6782413 6782468 chr3R 6782517 6782572 32 102 18.0 14.5 16.2 1.9 159 chr3R 6782413 intergenic not near genes chr3R 6782492 intergenic not near genes chr3R 6782572 intergenic not near genes chr3R_32_6780001 chr3R_6780001 RAL-304_100b 3022 chr3R 6803740 6803750 chr3R 6803835 6803841 12 99 0.0 19.0 9.5 1.1 101 chr3R 6803740 intergenic not near genes chr3R 6803790 intergenic not near genes chr3R 6803841 intergenic not near genes chr3R_12_6800001 chr3R_6800001 RAL-304_100b 3023 chr3R 6807245 6807296 chr3R 6807352 6807365 15 103 5.5 6.5 6.0 2.1 120 chr3R 6807245 intergenic not near genes chr3R 6807305 intergenic not near genes chr3R 6807365 intergenic not near genes chr3R_15_6805001 chr3R_6805001 RAL-304_100b 3024 chr3R 6828000 6828037 chr3R 6828101 6828138 26 100 9.5 6.5 8.0 2.9 138 chr3R 6828000 intron Scr - chr3R 6828069 intron Scr - chr3R 6828138 intron Scr - chr3R_26_6825001 chr3R_6825001 RAL-304_100b 3025 chr3R 6856359 6856400 chr3R 6856501 6856542 24 140 10.0 6.5 8.2 2.6 183 chr3R 6856359 intergenic not near genes chr3R 6856450 intergenic not near genes chr3R 6856542 intergenic not near genes chr3R_24_6855001 chr3R_6855001 RAL-304_100b 3026 chr3R 6862197 6862249 chr3R 6862307 6862355 41 109 10.0 12.0 11.0 3.4 158 chr3R 6862197 intergenic not near genes chr3R 6862276 intergenic not near genes chr3R 6862355 intergenic not near genes chr3R_41_6860001 chr3R_6860001 RAL-304_100b 3027 chr3R 6891255 6891269 chr3R 6891320 6891368 12 90 14.0 18.5 16.2 0.7 113 chr3R 6891255 intergenic not near genes chr3R 6891312 intergenic not near genes chr3R 6891368 intergenic not near genes chr3R_12_6890001 chr3R_6890001 RAL-304_100b 3028 chr3R 6912076 6912132 chr3R 6912212 6912268 11 135 6.5 4.0 5.2 1.8 192 chr3R 6912076 intron Antp - chr3R 6912172 intron Antp - chr3R 6912268 intron Antp - chr3R_11_6910001 chr3R_6910001 RAL-304_100b 3029 chr3R 6923558 6923617 chr3R 6923670 6923727 30 110 11.5 17.5 14.5 1.9 169 chr3R 6923558 intron Antp - chr3R 6923642 intron Antp - chr3R 6923727 intron Antp - chr3R_30_6920001 chr3R_6920001 RAL-304_100b 3030 chr3R 6961164 6961172 chr3R 6961266 6961276 6 103 40.0 29.0 34.5 0.2 112 chr3R 6961164 intron Antp - chr3R 6961220 intron Antp - chr3R 6961276 intron Antp - chr3R_6_6960001 chr3R_6960001 RAL-304_100b 3031 chr3R 6961174 6961201 chr3R 6961257 6961305 27 98 24.5 28.5 26.5 1.0 131 chr3R 6961174 intron Antp - chr3R 6961240 intron Antp - chr3R 6961305 intron Antp - chr3R_27_6960001 chr3R_6960001 RAL-304_100b 3032 chr3R 6997076 6997142 chr3R 9418239 9418239 F-element 7 2421146 38.0 75.0 56.5 0.1 2421163 chr3R 6997076 intron Antp - chr3R 8207658 intergenic not near genes chr3R 9418239 intron ps + chr3R_7_8205001 chr3R_8205001 RAL-304_100b 3033 chr3R 7012177 7012235 chr3R 7012280 7012327 49 99 21.5 24.5 23.0 2.0 150 chr3R 7012177 intergenic not near genes chr3R 7012252 intergenic not near genes chr3R 7012327 intergenic not near genes chr3R_49_7010001 chr3R_7010001 RAL-304_100b 3034 chr3R 7051096 7051152 chr3R 7051200 7051256 35 102 12.0 11.0 11.5 2.8 160 chr3R 7051096 intergenic not near genes chr3R 7051176 intergenic not near genes chr3R 7051256 intergenic not near genes chr3R_35_7050001 chr3R_7050001 RAL-304_100b 3035 chr3R 7094694 7094694 chr3R 7773344 7773344 4 678650 75.5 45.0 60.2 0.1 678650 chr3R 7094694 3` UTR e(y)2b + chr3R 7434019 intergenic not near genes chr3R 7773344 intergenic not near genes chr3R_4_7430001 chr3R_7430001 RAL-304_100b 3036 chr3R 7095945 7095978 chr3R 7096055 7096058 18 108 26.5 21.0 23.8 0.7 113 chr3R 7095945 intergenic not near genes chr3R 7096002 intergenic not near genes chr3R 7096058 intergenic not near genes chr3R_18_7095001 chr3R_7095001 RAL-304_100b 3037 chr3R 7103903 7103960 chr3R 7104027 7104084 40 122 11.5 14.0 12.8 2.9 181 chr3R 7103903 intron Alh - chr3R 7103994 intron Alh - chr3R 7104084 intron Alh - chr3R_40_7100001 chr3R_7100001 RAL-304_100b 3038 chr3R 7106509 7106537 chr3R 7106610 7106641 14 105 9.5 8.5 9.0 1.4 132 chr3R 7106509 intron Alh - chr3R 7106575 intron Alh - chr3R 7106641 intron Alh - chr3R_14_7105001 chr3R_7105001 RAL-304_100b 3039 chr3R 7121708 7121737 chr3R 7121826 7121855 11 116 17.5 15.0 16.2 0.6 147 chr3R 7121708 exon Alh - chr3R 7121782 intron Alh - chr3R 7121855 intron Alh - chr3R_11_7120001 chr3R_7120001 RAL-304_100b 3040 chr3R 7147078 7147101 chr3R 7147216 7147229 10 136 16.5 8.5 12.5 0.7 151 chr3R 7147078 intron,exon CG2656 +,gfzf - chr3R 7147154 intron,intron CG2656 +,gfzf - chr3R 7147229 intron,intron CG2656 +,gfzf - chr3R_10_7145001 chr3R_7145001 RAL-304_100b 3041 chr3R 7173654 7173705 chr3R 7173758 7173810 14 103 7.5 5.0 6.2 1.9 156 chr3R 7173654 intron sas + chr3R 7173732 intron sas + chr3R 7173810 intron sas + chr3R_14_7170001 chr3R_7170001 RAL-304_100b 3042 chr3R 7206852 7206882 chr3R 7206964 7206995 32 110 10.0 20.0 15.0 2.0 143 chr3R 7206852 intergenic not near genes chr3R 7206924 intergenic CG1288 - chr3R 7206995 intergenic CG1288 - chr3R_32_7205001 chr3R_7205001 RAL-304_100b 3043 chr3R 7206883 7206906 chr3R 7206963 7207015 44 105 8.0 20.0 14.0 2.9 132 chr3R 7206883 intergenic CG1288 - chr3R 7206949 intergenic CG1288 - chr3R 7207015 intergenic CG1288 - chr3R_44_7205001 chr3R_7205001 RAL-304_100b 3044 chr3R 7372988 7373023 chr3R 7373071 7373127 23 93 16.5 18.0 17.2 1.3 139 chr3R 7372988 intergenic not near genes chr3R 7373058 intergenic not near genes chr3R 7373127 intergenic not near genes chr3R_23_7370001 chr3R_7370001 RAL-304_100b 3045 chr3R 7385561 7385571 chr3R 7385662 7385671 7 100 48.5 23.5 36.0 0.2 110 chr3R 7385561 intergenic not near genes chr3R 7385616 intergenic not near genes chr3R 7385671 intergenic not near genes chr3R_7_7385001 chr3R_7385001 RAL-304_100b 3046 chr3R 7385575 7385585 chr3R 7385660 7385686 9 93 42.5 22.5 32.5 0.3 111 chr3R 7385575 intergenic not near genes chr3R 7385630 intergenic not near genes chr3R 7385686 intergenic not near genes chr3R_9_7385001 chr3R_7385001 RAL-304_100b 3047 chr3R 7385586 7385617 chr3R 7385657 7385672 39 83 18.5 23.0 20.8 1.8 86 chr3R 7385586 intergenic not near genes chr3R 7385629 intergenic not near genes chr3R 7385672 intergenic not near genes chr3R_39_7385001 chr3R_7385001 RAL-304_100b 3048 chr3R 7580075 7580093 chr3R 7580174 7580187 13 99 50.5 17.5 34.0 0.4 112 chr3R 7580075 intron CG34127 - chr3R 7580131 intron CG34127 - chr3R 7580187 intron CG34127 - chr3R_13_7580001 chr3R_7580001 RAL-304_100b 3049 chr3R 7601939 7601943 chr3R 7602045 7602049 4 106 29.0 23.0 26.0 0.1 110 chr3R 7601939 intron CG34127 - chr3R 7601994 intron CG34127 - chr3R 7602049 intron CG34127 - chr3R_4_7600001 chr3R_7600001 RAL-304_100b 3050 chr3R 7601944 7601988 chr3R 7602037 7602094 34 97 12.5 20.5 16.5 1.9 150 chr3R 7601944 intron CG34127 - chr3R 7602019 intron CG34127 - chr3R 7602094 intron CG34127 - chr3R_34_7600001 chr3R_7600001 RAL-304_100b 3051 chr3R 7676945 7676996 chr3R 7677115 7677154 55 165 28.0 27.5 27.8 1.9 209 chr3R 7676945 intron Nlg1 + chr3R 7677050 intron Nlg1 + chr3R 7677154 intron Nlg1 + chr3R_55_7675001 chr3R_7675001 RAL-304_100b 3052 chr3R 7683642 7683646 chr3R 7683960 7683970 6 323 29.0 31.0 30.0 0.2 328 chr3R 7683642 intron Nlg1 + chr3R 7683806 intron Nlg1 + chr3R 7683970 intron Nlg1 + chr3R_6_7680001 chr3R_7680001 RAL-304_100b 3053 chr3R 7683647 7683655 chr3R 7683959 7683979 11 321 25.0 30.5 27.8 0.4 332 chr3R 7683647 intron Nlg1 + chr3R 7683813 intron Nlg1 + chr3R 7683979 intron Nlg1 + chr3R_11_7680001 chr3R_7680001 RAL-304_100b 3054 chr3R 7683656 7683668 chr3R 7683950 7683992 16 317 19.0 24.0 21.5 0.7 336 chr3R 7683656 intron Nlg1 + chr3R 7683824 intron Nlg1 + chr3R 7683992 intron Nlg1 + chr3R_16_7680001 chr3R_7680001 RAL-304_100b 3055 chr3R 7683669 7683680 chr3R 7683945 7684004 19 313 13.0 19.5 16.2 1.1 335 chr3R 7683669 intron Nlg1 + chr3R 7683836 intron Nlg1 + chr3R 7684004 intron Nlg1 + chr3R_19_7680001 chr3R_7680001 RAL-304_100b 3056 chr3R 7694554 7694608 chr3R 7713640 7713694 invader3 16 19084 7.0 14.5 10.8 1.4 19140 chr3R 7694554 3` UTR Nlg1 + chr3R 7704124 intergenic not near genes chr3R 7713694 intergenic not near genes chr3R_16_7700001 chr3R_7700001 RAL-304_100b 3057 chr3R 7726136 7726143 chr3R 7726238 7726245 7 102 38.0 22.5 30.2 0.2 109 chr3R 7726136 intergenic not near genes chr3R 7726190 intergenic not near genes chr3R 7726245 intergenic not near genes chr3R_7_7725001 chr3R_7725001 RAL-304_100b 3058 chr3R 7726146 7726187 chr3R 7726231 7726289 54 94 16.5 20.5 18.5 2.8 143 chr3R 7726146 intergenic not near genes chr3R 7726218 intergenic not near genes chr3R 7726289 intergenic not near genes chr3R_54_7725001 chr3R_7725001 RAL-304_100b 3059 chr3R 7729451 7729457 chr3R 7737406 7737415 Stalker2 7 7961 27.5 11.0 19.2 0.3 7964 chr3R 7729451 intergenic not near genes chr3R 7733433 intergenic not near genes chr3R 7737415 intergenic not near genes chr3R_7_7730001 chr3R_7730001 RAL-304_100b 3060 chr3R 7729460 7729491 chr3R 7737402 7737454 Stalker2 28 7959 15.5 10.0 12.8 2.0 7994 chr3R 7729460 intergenic not near genes chr3R 7733457 intergenic not near genes chr3R 7737454 intergenic not near genes chr3R_28_7730001 chr3R_7730001 RAL-304_100b 3061 chr3R 7773344 7773344 chr3R 7890530 7890532 19 117188 51.5 27.0 39.2 0.5 117188 chr3R 7773344 intergenic not near genes chr3R 7831938 intron CG34384 + chr3R 7890532 intron mRpS9 - chr3R_19_7830001 chr3R_7830001 RAL-304_100b 3062 chr3R 7773344 7773344 chr3R 21907534 21907536 5 14134191 51.5 76.0 63.8 0.1 14134192 chr3R 7773344 intergenic not near genes chr3R 14840440 intron btsz - chr3R 21907536 intergenic CG6678 + chr3R_5_14840001 chr3R_14840001 RAL-304_100b 3063 chr3R 7837998 7838051 chr3R 7838247 7838300 52 244 14.5 11.5 13.0 3.7 302 chr3R 7837998 intron CG34384 + chr3R 7838149 intron CG34384 + chr3R 7838300 intron CG34384 + chr3R_52_7835001 chr3R_7835001 RAL-304_100b 3064 chr3R 7884647 7884661 chr3R 7884745 7884764 9 101 42.5 15.0 28.8 0.3 117 chr3R 7884647 intron CG17816 - chr3R 7884706 intron CG17816 - chr3R 7884764 intron CG17816 - chr3R_9_7880001 chr3R_7880001 RAL-304_100b 3065 chr3R 7884662 7884700 chr3R 7884744 7884768 43 94 19.5 15.0 17.2 2.4 106 chr3R 7884662 intron CG17816 - chr3R 7884715 intron CG17816 - chr3R 7884768 intron CG17816 - chr3R_43_7880001 chr3R_7880001 RAL-304_100b 3066 chr3R 7773344 7773344 chr3R 7890529 7890533 7 117187 51.5 28.0 39.8 0.2 117189 chr3R 7773344 intergenic not near genes chr3R 7831938 intron CG34384 + chr3R 7890533 intron mRpS9 - chr3R_7_7830001 chr3R_7830001 RAL-304_100b 3067 chr3R 7948421 7948468 chr3R 7948523 7948570 38 98 15.5 12.5 14.0 2.5 149 chr3R 7948421 intron dsx - chr3R 7948496 intron dsx - chr3R 7948570 intron dsx - chr3R_38_7945001 chr3R_7945001 RAL-304_100b 3068 chr3R 7973296 7973342 chr3R 7974383 7974414 1360 35 1085 12.0 9.0 10.5 3.0 1118 chr3R 7973296 intergenic not near genes chr3R 7973855 intergenic not near genes chr3R 7974414 3` UTR CD98hc - chr3R_35_7970001 chr3R_7970001 RAL-304_100b 3069 chr3R 8049025 8049064 chr3R 8049624 8049662 30 597 13.0 8.0 10.5 2.6 637 chr3R 8049025 intron CG43060 + chr3R 8049344 intron,intron CG43060 +,CG43618 + chr3R 8049662 intron CG43060 + chr3R_30_8045001 chr3R_8045001 RAL-304_100b 3070 chr3R 8082560 8082594 chr3R 8082662 8082696 35 101 27.5 26.5 27.0 1.2 136 chr3R 8082560 intron mAChR-B + chr3R 8082628 intron mAChR-B + chr3R 8082696 intron mAChR-B + chr3R_35_8080001 chr3R_8080001 RAL-304_100b 3071 chr3R 8090551 8090570 chr3R 8094080 8094084 297 11 3526 10.0 13.5 11.8 0.9 3533 chr3R 8090551 intergenic CR44330 + chr3R 8092318 intergenic not near genes chr3R 8094084 intergenic CG7900 + chr3R_11_8090001 chr3R_8090001 RAL-304_100b 3072 chr3R 8094389 8094425 chr3R 8099717 8099740 Transpac 31 5329 20.5 15.5 18.0 1.6 5351 chr3R 8094389 intron CG7900 + chr3R 8097064 intron CG7900 + chr3R 8099740 intron CG7900 + chr3R_31_8095001 chr3R_8095001 RAL-304_100b 3073 chr3R 8094427 8094436 chr3R 8099715 8099766 Transpac 10 5325 14.5 15.0 14.8 0.6 5339 chr3R 8094427 intron CG7900 + chr3R 8097096 intron CG7900 + chr3R 8099766 intron CG7900 + chr3R_10_8095001 chr3R_8095001 RAL-304_100b 3074 chr3R 8101738 8101788 chr3R 8104847 8104897 G2 43 3103 16.0 13.5 14.8 2.7 3159 chr3R 8101738 exon CG7900 + chr3R 8103318 intron CG7900 + chr3R 8104897 3` UTR CG7900 + chr3R_43_8100001 chr3R_8100001 RAL-304_100b 3075 chr3R 8107361 8107417 chr3R 8107520 8107576 31 156 12.0 15.0 13.5 2.1 215 chr3R 8107361 intron puc + chr3R 8107468 intron puc + chr3R 8107576 intron puc + chr3R_31_8105001 chr3R_8105001 RAL-304_100b 3076 chr3R 8199513 8199541 chr3R 8199844 8199872 32 329 17.0 14.5 15.8 1.9 359 chr3R 8199513 intergenic not near genes chr3R 8199692 intergenic not near genes chr3R 8199872 intergenic not near genes chr3R_32_8195001 chr3R_8195001 RAL-304_100b 3077 chr3R 8207534 8207588 chr3R 8208398 8208430 F-element 43 863 12.5 13.0 12.8 3.1 896 chr3R 8207534 intergenic not near genes chr3R 8207982 intergenic not near genes chr3R 8208430 intergenic not near genes chr3R_43_8205001 chr3R_8205001 RAL-304_100b 3078 chr3R 8304224 8304276 chr3R 8304342 8304397 32 119 10.5 7.5 9.0 3.2 173 chr3R 8304224 3` UTR Sgt1 - chr3R 8304310 3` UTR Sgt1 - chr3R 8304397 3` UTR Sgt1 - chr3R_32_8300001 chr3R_8300001 RAL-304_100b 3079 chr3R 8339231 8339247 chr3R 21907534 21907536 53 13568289 72.5 76.0 74.2 0.7 13568305 chr3R 8339231 intergenic not near genes chr3R 15123384 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_53_15120001 chr3R_15120001 RAL-304_100b 3080 chr3R 8374141 8374175 chr3R 8374281 8374315 36 135 29.0 12.5 20.8 1.7 174 chr3R 8374141 intron CG45263 - chr3R 8374228 intron CG45263 - chr3R 8374315 intron CG45263 - chr3R_36_8370001 chr3R_8370001 RAL-304_100b 3081 chr3R 8402983 8403001 chr3R 8412174 8412192 roo 19 9189 38.0 26.5 32.2 0.6 9209 chr3R 8402983 intron CG45263 - chr3R 8407588 intron CG45263 - chr3R 8412192 intron CG45263 - chr3R_19_8405001 chr3R_8405001 RAL-304_100b 3082 chr3R 8403002 8403039 chr3R 8412173 8412209 roo 30 9180 16.0 25.5 20.8 1.4 9207 chr3R 8403002 intron CG45263 - chr3R 8407606 intron CG45263 - chr3R 8412209 intron CG45263 - chr3R_30_8405001 chr3R_8405001 RAL-304_100b 3083 chr3R 8478058 8478110 chr3R 8478164 8478215 39 102 10.0 18.0 14.0 2.6 157 chr3R 8478058 intergenic CG45263 - chr3R 8478136 intergenic not near genes chr3R 8478215 intergenic not near genes chr3R_39_8475001 chr3R_8475001 RAL-304_100b 3084 chr3R 8552344 8552345 chr3R 8552449 8552450 4 105 47.0 21.5 34.2 0.1 106 chr3R 8552344 intergenic Or85d + chr3R 8552397 intergenic Or85d + chr3R 8552450 intergenic Or85d + chr3R_4_8550001 chr3R_8550001 RAL-304_100b 3085 chr3R 8552347 8552402 chr3R 8552446 8552505 51 99 14.0 20.0 17.0 2.8 158 chr3R 8552347 intergenic Or85d + chr3R 8552426 intergenic Or85d + chr3R 8552505 intergenic Or85d + chr3R_51_8550001 chr3R_8550001 RAL-304_100b 3086 chr3R 8570452 8570507 chr3R 8575113 8575155 HMS-Beagle 36 4655 10.0 11.5 10.8 3.1 4703 chr3R 8570452 intergenic not near genes chr3R 8572804 intergenic not near genes chr3R 8575155 intergenic not near genes chr3R_36_8570001 chr3R_8570001 RAL-304_100b 3087 chr3R 8601751 8601762 chr3R 8610926 8610940 roo 9 9175 34.5 16.0 25.2 0.3 9189 chr3R 8601751 intron 5-HT2B + chr3R 8606346 intron 5-HT2B + chr3R 8610940 intron 5-HT2B + chr3R_9_8605001 chr3R_8605001 RAL-304_100b 3088 chr3R 8601763 8601780 chr3R 8610924 8610953 roo 18 9172 25.0 15.0 20.0 0.9 9190 chr3R 8601763 intron 5-HT2B + chr3R 8606358 intron 5-HT2B + chr3R 8610953 intron 5-HT2B + chr3R_18_8605001 chr3R_8605001 RAL-304_100b 3089 chr3R 8601782 8601799 chr3R 8610921 8610971 roo 21 9165 17.0 14.5 15.8 1.2 9189 chr3R 8601782 intron 5-HT2B + chr3R 8606376 intron 5-HT2B + chr3R 8610971 intron 5-HT2B + chr3R_21_8605001 chr3R_8605001 RAL-304_100b 3090 chr3R 8685270 8685315 chr3R 8685395 8685438 23 124 11.0 8.5 9.8 2.1 168 chr3R 8685270 intron CR44937 - chr3R 8685354 intron CR44937 - chr3R 8685438 intron CR44937 - chr3R_23_8685001 chr3R_8685001 RAL-304_100b 3091 chr3R 8707331 8707384 chr3R 8709797 8709823 jockey 64 2462 28.0 24.0 26.0 2.4 2492 chr3R 8707331 intergenic not near genes chr3R 8708577 intergenic not near genes chr3R 8709823 intergenic not near genes chr3R_64_8705001 chr3R_8705001 RAL-304_100b 3092 chr3R 8741235 8741237 chr3R 14331266 14331269 4 5590032 61.5 26.0 43.8 0.1 5590034 chr3R 8741235 intron CG9801 - chr3R 11536252 intron,5` UTR dpr4 -,CR45056 + chr3R 14331269 intron NK7.1 - chr3R_4_11535001 chr3R_11535001 RAL-304_100b 3093 chr3R 8885260 8885276 chr3R 8885379 8885395 7 119 15.5 16.5 16.0 0.4 135 chr3R 8885260 intron pyd - chr3R 8885328 intron pyd - chr3R 8885395 intron pyd - chr3R_7_8885001 chr3R_8885001 RAL-304_100b 3094 chr3R 8898183 8898213 chr3R 8913802 8913821 297 16 15615 10.5 18.5 14.5 1.0 15638 chr3R 8898183 intron pyd - chr3R 8906002 intron pyd - chr3R 8913821 intron pyd - chr3R_16_8905001 chr3R_8905001 RAL-304_100b 3095 chr3R 8917863 8917910 chr3R 8917968 8918000 34 103 8.0 12.5 10.2 3.0 137 chr3R 8917863 intron pyd - chr3R 8917932 intron pyd - chr3R 8918000 intron pyd - chr3R_34_8915001 chr3R_8915001 RAL-304_100b 3096 chr3R 8979861 8979918 chr3R 8979968 8980010 28 104 5.0 13.5 9.2 2.7 149 chr3R 8979861 intergenic not near genes chr3R 8979936 intergenic not near genes chr3R 8980010 intergenic not near genes chr3R_28_8975001 chr3R_8975001 RAL-304_100b 3097 chr3R 9036350 9036403 chr3R 9036453 9036506 33 101 11.5 7.0 9.2 3.2 156 chr3R 9036350 intron neur - chr3R 9036428 intron neur - chr3R 9036506 intron neur - chr3R_33_9035001 chr3R_9035001 RAL-304_100b 3098 chr3R 9043713 9043758 chr3R 9043826 9043871 50 107 22.5 24.0 23.2 2.1 158 chr3R 9043713 intron Nmdmc - chr3R 9043792 intron Nmdmc - chr3R 9043871 intron Nmdmc - chr3R_50_9040001 chr3R_9040001 RAL-304_100b 3099 chr3R 9043759 9043771 chr3R 9043825 9043873 10 100 11.5 23.0 17.2 0.5 114 chr3R 9043759 intron Nmdmc - chr3R 9043816 intron Nmdmc - chr3R 9043873 intron Nmdmc - chr3R_10_9040001 chr3R_9040001 RAL-304_100b 3100 chr3R 9082020 9082073 chr3R 9082139 9082192 56 115 3.5 20.0 11.8 4.4 172 chr3R 9082020 intron pum - chr3R 9082106 intron pum - chr3R 9082192 intron pum - chr3R_56_9080001 chr3R_9080001 RAL-304_100b 3101 chr3R 9104450 9104501 chr3R 9104565 9104601 36 111 7.5 7.0 7.2 4.4 151 chr3R 9104450 intron pum - chr3R 9104526 intron pum - chr3R 9104601 intron pum - chr3R_36_9100001 chr3R_9100001 RAL-304_100b 3102 chr3R 9108850 9108881 chr3R 9108944 9108982 23 100 13.5 10.5 12.0 1.8 132 chr3R 9108850 intron pum - chr3R 9108916 intron pum - chr3R 9108982 intron pum - chr3R_23_9105001 chr3R_9105001 RAL-304_100b 3103 chr3R 9170888 9170940 chr3R 9171019 9171071 42 127 15.5 12.0 13.8 2.8 183 chr3R 9170888 intron pum - chr3R 9170980 intron pum - chr3R 9171071 intron pum - chr3R_42_9170001 chr3R_9170001 RAL-304_100b 3104 chr3R 9204225 9204278 chr3R 9204334 9204390 36 106 14.5 15.5 15.0 2.2 165 chr3R 9204225 intron pum - chr3R 9204308 intron pum - chr3R 9204390 intron pum - chr3R_36_9200001 chr3R_9200001 RAL-304_100b 3105 chr3R 9277530 9277576 chr3R 9277670 9277707 53 137 20.5 12.0 16.2 3.1 177 chr3R 9277530 intergenic not near genes chr3R 9277618 intergenic not near genes chr3R 9277707 intergenic not near genes chr3R_53_9275001 chr3R_9275001 RAL-304_100b 3106 chr3R 9278768 9278816 chr3R 9284043 9284060 Rt1a 47 5279 16.0 22.5 19.2 2.3 5292 chr3R 9278768 intergenic not near genes chr3R 9281414 intergenic not near genes chr3R 9284060 intergenic not near genes chr3R_47_9280001 chr3R_9280001 RAL-304_100b 3107 chr3R 9304505 9304529 chr3R 9311817 9311825 Stalker4 8 7309 38.0 14.0 26.0 0.3 7320 chr3R 9304505 intron CG8861 - chr3R 9308165 intron CG8861 - chr3R 9311825 intron CG8861 - chr3R_8_9305001 chr3R_9305001 RAL-304_100b 3108 chr3R 9319555 9319605 chr3R 9320015 9320045 jockey 32 457 12.5 22.5 17.5 1.7 490 chr3R 9319555 intron CG8861 - chr3R 9319800 intron CG8861 - chr3R 9320045 intron CG8861 - chr3R_32_9315001 chr3R_9315001 RAL-304_100b 3109 chr3R 9350481 9350536 chr3R 9350587 9350612 35 103 12.0 20.5 16.2 2.0 131 chr3R 9350481 intron CG45050 + chr3R 9350546 intron CG45050 + chr3R 9350612 intron CG45050 + chr3R_35_9350001 chr3R_9350001 RAL-304_100b 3110 chr3R 9361807 9361845 chr3R 9362063 9362111 pogo 16 265 8.5 11.0 9.8 1.5 304 chr3R 9361807 3` UTR CG45050 + chr3R 9361959 3` UTR CG45050 + chr3R 9362111 3` UTR CG45050 + chr3R_16_9360001 chr3R_9360001 RAL-304_100b 3111 chr3R 9379126 9379176 chr3R 9379227 9379278 15 103 0.0 13.5 6.8 1.9 152 chr3R 9379126 intron FER - chr3R 9379202 intron FER - chr3R 9379278 intron FER - chr3R_15_9375001 chr3R_9375001 RAL-304_100b 3112 chr3R 9382790 9382843 chr3R 9382940 9382993 36 147 19.0 5.5 12.2 2.7 203 chr3R 9382790 intron FER - chr3R 9382892 intron FER - chr3R 9382993 intron FER - chr3R_36_9380001 chr3R_9380001 RAL-304_100b 3113 chr3R 9428791 9428847 chr3R 9428894 9428950 61 99 15.5 15.5 15.5 3.7 159 chr3R 9428791 intron ps + chr3R 9428870 intron ps + chr3R 9428950 intron ps + chr3R_61_9425001 chr3R_9425001 RAL-304_100b 3114 chr3R 9620956 9620956 chr3R 21907534 21907536 10 12286579 48.5 76.0 62.2 0.2 12286580 chr3R 9620956 intron CG8312 + chr3R 15764246 intergenic not near genes chr3R 21907536 intergenic CG6678 + chr3R_10_15760001 chr3R_15760001 RAL-304_100b 3115 chr3R 9702240 9702295 chr3R 9702341 9702375 55 93 16.0 18.5 17.2 3.0 135 chr3R 9702240 intron Unc-115a - chr3R 9702308 intron Unc-115a - chr3R 9702375 intron Unc-115a - chr3R_55_9700001 chr3R_9700001 RAL-304_100b 3116 chr3R 9853149 9853210 chr3R 9853283 9853307 51 129 18.5 13.0 15.8 3.0 158 chr3R 9853149 intron Teh1 - chr3R 9853228 intron Teh1 - chr3R 9853307 intron Teh1 - chr3R_51_9850001 chr3R_9850001 RAL-304_100b 3117 chr3R 9898765 9898772 chr3R 9898882 9898889 6 116 25.0 13.5 19.2 0.3 124 chr3R 9898765 intron Glut4EF + chr3R 9898827 intron Glut4EF + chr3R 9898889 intron Glut4EF + chr3R_6_9895001 chr3R_9895001 RAL-304_100b 3118 chr3R 9898774 9898819 chr3R 9898880 9898936 33 115 9.5 13.0 11.2 2.7 162 chr3R 9898774 intron Glut4EF + chr3R 9898855 intron Glut4EF + chr3R 9898936 intron Glut4EF + chr3R_33_9895001 chr3R_9895001 RAL-304_100b 3119 chr3R 10231774 10231782 chr3R 10237367 10237384 mdg3 6 5597 12.0 18.0 15.0 0.4 5610 chr3R 10231774 intron CG42795 + chr3R 10234579 intron CG42795 + chr3R 10237384 intron CG42795 + chr3R_6_10230001 chr3R_10230001 RAL-304_100b 3120 chr3R 10231783 10231814 chr3R 10237366 10237416 mdg3 33 5597 3.5 17.0 10.2 2.9 5633 chr3R 10231783 intron CG42795 + chr3R 10234600 intron CG42795 + chr3R 10237416 intron CG42795 + chr3R_33_10230001 chr3R_10230001 RAL-304_100b 3121 chr3R 10255359 10255384 chr3R 10260824 10260831 I-element 18 5464 21.0 15.5 18.2 0.9 5472 chr3R 10255359 3` UTR Sirt6 - chr3R 10258095 intron Sirt6 - chr3R 10260831 exon Sirt6 - chr3R_18_10255001 chr3R_10255001 RAL-304_100b 3122 chr3R 10277108 10277122 chr3R 10277213 10277227 6 105 21.5 10.5 16.0 0.4 119 chr3R 10277108 intron CG43143 + chr3R 10277168 intron CG43143 + chr3R 10277227 intron CG43143 + chr3R_6_10275001 chr3R_10275001 RAL-304_100b 3123 chr3R 10277123 10277165 chr3R 10277212 10277270 26 98 9.0 10.0 9.5 2.5 147 chr3R 10277123 intron CG43143 + chr3R 10277196 intron CG43143 + chr3R 10277270 intron CG43143 + chr3R_26_10275001 chr3R_10275001 RAL-304_100b 3124 chr3R 10394050 10394093 chr3R 10394164 10394217 25 120 15.0 6.5 10.8 2.1 167 chr3R 10394050 intron cwo + chr3R 10394134 intron cwo + chr3R 10394217 intron cwo + chr3R_25_10390001 chr3R_10390001 RAL-304_100b 3125 chr3R 6090420 6090421 chr3R 10451877 10451877 8 4361457 62.5 83.5 73.0 0.1 4361457 chr3R 6090420 intron Gasp - chr3R 8271148 intergenic not near genes chr3R 10451877 intergenic not near genes chr3R_8_8270001 chr3R_8270001 RAL-304_100b 3126 chr3R 10487616 10487625 chr3R 10487720 10487725 7 103 11.0 39.5 25.2 0.3 109 chr3R 10487616 intergenic not near genes chr3R 10487670 intergenic not near genes chr3R 10487725 intergenic not near genes chr3R_7_10485001 chr3R_10485001 RAL-304_100b 3127 chr3R 10512718 10512771 chr3R 10512832 10512884 41 110 15.0 19.5 17.2 2.3 166 chr3R 10512718 intron hth - chr3R 10512801 intron hth - chr3R 10512884 intron hth - chr3R_41_10510001 chr3R_10510001 RAL-304_100b 3128 chr3R 10535319 10535343 chr3R 10535433 10535461 9 113 9.0 10.5 9.8 0.8 142 chr3R 10535319 intron hth - chr3R 10535390 intron hth - chr3R 10535461 intron hth - chr3R_9_10535001 chr3R_10535001 RAL-304_100b 3129 chr3R 10593435 10593453 chr3R 10593536 10593562 12 99 9.5 20.5 15.0 0.8 127 chr3R 10593435 intron hth - chr3R 10593498 intron hth - chr3R 10593562 exon hth - chr3R_12_10590001 chr3R_10590001 RAL-304_100b 3130 chr3R 10593457 10593462 chr3R 10593529 10593571 9 103 8.0 19.0 13.5 0.6 114 chr3R 10593457 intron hth - chr3R 10593514 intron hth - chr3R 10593571 exon hth - chr3R_9_10590001 chr3R_10590001 RAL-304_100b 3131 chr3R 10627590 10627631 chr3R 10627727 10627764 13 134 5.0 8.5 6.8 1.7 174 chr3R 10627590 intergenic not near genes chr3R 10627677 intergenic not near genes chr3R 10627764 intergenic not near genes chr3R_13_10625001 chr3R_10625001 RAL-304_100b 3132 chr3R 10646078 10646134 chr3R 10646254 10646295 50 174 11.5 12.5 12.0 3.8 217 chr3R 10646078 intergenic CR44018 + chr3R 10646186 intergenic CR44018 + chr3R 10646295 intergenic not near genes chr3R_50_10645001 chr3R_10645001 RAL-304_100b 3133 chr3R 10727624 10727629 chr3R 10727729 10727734 5 105 49.5 18.0 33.8 0.1 110 chr3R 10727624 intergenic not near genes chr3R 10727679 intergenic not near genes chr3R 10727734 intergenic not near genes chr3R_5_10725001 chr3R_10725001 RAL-304_100b 3134 chr3R 10727630 10727678 chr3R 10727724 10727783 52 97 19.0 15.5 17.2 2.9 153 chr3R 10727630 intergenic not near genes chr3R 10727706 intergenic not near genes chr3R 10727783 intergenic not near genes chr3R_52_10725001 chr3R_10725001 RAL-304_100b 3135 chr3R 10732817 10732836 chr3R 10732927 10732946 11 109 34.5 12.5 23.5 0.4 129 chr3R 10732817 intergenic not near genes chr3R 10732882 intergenic not near genes chr3R 10732946 intergenic not near genes chr3R_11_10730001 chr3R_10730001 RAL-304_100b 3136 chr3R 10732839 10732876 chr3R 10732923 10732954 48 99 10.5 10.5 10.5 4.2 115 chr3R 10732839 intergenic not near genes chr3R 10732896 intergenic not near genes chr3R 10732954 intergenic not near genes chr3R_48_10730001 chr3R_10730001 RAL-304_100b 3137 chr3R 10785801 10785815 chr3R 10785892 10785919 13 102 18.5 12.5 15.5 0.8 118 chr3R 10785801 intron Rbp1 + chr3R 10785860 intron Rbp1 + chr3R 10785919 intron Rbp1 + chr3R_13_10785001 chr3R_10785001 RAL-304_100b 3138 chr3R 10785816 10785840 chr3R 10785890 10785944 14 100 12.0 12.0 12.0 1.1 128 chr3R 10785816 intron Rbp1 + chr3R 10785880 intron Rbp1 + chr3R 10785944 intron Rbp1 + chr3R_14_10785001 chr3R_10785001 RAL-304_100b 3139 chr3R 10804155 10804203 chr3R 10811706 10811760 17.6 28 7552 6.5 8.0 7.2 3.4 7605 chr3R 10804155 intergenic CG14692 - chr3R 10807958 intergenic not near genes chr3R 10811760 3` UTR CG14693 - chr3R_28_10805001 chr3R_10805001 RAL-304_100b 3140 chr3R 10868573 10868586 chr3R 10868676 10868689 7 103 51.0 29.0 40.0 0.2 116 chr3R 10868573 5` UTR SelR - chr3R 10868631 5` UTR SelR - chr3R 10868689 intergenic Tsp86D +,SelR - chr3R_7_10865001 chr3R_10865001 RAL-304_100b 3141 chr3R 10868590 10868625 chr3R 10868668 10868724 36 86 26.0 20.5 23.2 1.5 134 chr3R 10868590 5` UTR SelR - chr3R 10868657 intergenic SelR -,Tsp86D + chr3R 10868724 5` UTR Tsp86D + chr3R_36_10865001 chr3R_10865001 RAL-304_100b 3142 chr3R 10904885 10904937 chr3R 10905114 10905166 55 227 14.0 12.5 13.2 3.9 281 chr3R 10904885 intergenic not near genes chr3R 10905026 intergenic not near genes chr3R 10905166 intergenic not near genes chr3R_55_10905001 chr3R_10905001 RAL-304_100b 3143 chr3R 10906811 10906857 chr3R 10906907 10906948 35 98 12.0 14.0 13.0 2.5 137 chr3R 10906811 intergenic not near genes chr3R 10906880 intergenic not near genes chr3R 10906948 intergenic not near genes chr3R_35_10905001 chr3R_10905001 RAL-304_100b 3144 chr3R 10919660 10919718 chr3R 10919761 10919819 49 100 9.5 7.0 8.2 5.3 159 chr3R 10919660 intergenic not near genes chr3R 10919740 intergenic not near genes chr3R 10919819 intergenic not near genes chr3R_49_10915001 chr3R_10915001 RAL-304_100b 3145 chr3R 10920024 10920030 chr3R 10920127 10920133 4 102 19.0 18.5 18.8 0.2 109 chr3R 10920024 intergenic not near genes chr3R 10920078 intergenic not near genes chr3R 10920133 intergenic not near genes chr3R_4_10920001 chr3R_10920001 RAL-304_100b 3146 chr3R 10920031 10920077 chr3R 10920122 10920180 30 97 9.5 15.5 12.5 2.2 149 chr3R 10920031 intergenic not near genes chr3R 10920106 intergenic not near genes chr3R 10920180 intergenic not near genes chr3R_30_10920001 chr3R_10920001 RAL-304_100b 3147 chr3R 10957840 10957885 chr3R 10963254 10963299 Rt1c 42 5407 17.5 17.0 17.2 2.3 5459 chr3R 10957840 intergenic not near genes chr3R 10960570 intergenic not near genes chr3R 10963299 intergenic not near genes chr3R_42_10960001 chr3R_10960001 RAL-304_100b 3148 chr3R 11024156 11024186 chr3R 11024277 11024302 23 118 19.5 17.5 18.5 1.2 146 chr3R 11024156 intron CG34114 + chr3R 11024229 intron CG34114 + chr3R 11024302 intron CG34114 + chr3R_23_11020001 chr3R_11020001 RAL-304_100b 3149 chr3R 11024189 11024212 chr3R 11024274 11024293 21 109 11.0 15.5 13.2 1.5 104 chr3R 11024189 intron CG34114 + chr3R 11024241 intron CG34114 + chr3R 11024293 intron CG34114 + chr3R_21_11020001 chr3R_11020001 RAL-304_100b 3150 chr3R 11065565 11065616 chr3R 11071244 11071287 297 7 5677 4.5 10.5 7.5 0.8 5722 chr3R 11065565 intergenic not near genes chr3R 11068426 intergenic not near genes chr3R 11071287 intergenic not near genes chr3R_7_11065001 chr3R_11065001 RAL-304_100b 3151 chr3R 11099631 11099689 chr3R 11099788 11099846 56 156 11.5 9.5 10.5 4.9 215 chr3R 11099631 intergenic not near genes chr3R 11099738 intergenic not near genes chr3R 11099846 intergenic not near genes chr3R_56_11095001 chr3R_11095001 RAL-304_100b 3152 chr3R 11155017 11155069 chr3R 11155120 11155172 37 100 14.5 11.5 13.0 2.6 155 chr3R 11155017 intron Ugt86Dc + chr3R 11155094 intron Ugt86Dc + chr3R 11155172 intron Ugt86Dc + chr3R_37_11155001 chr3R_11155001 RAL-304_100b 3153 chr3R 11172785 11172821 chr3R 11172901 11172937 10 113 17.5 18.0 17.8 0.5 152 chr3R 11172785 intergenic Ugt35a - chr3R 11172861 intergenic Ugt35a - chr3R 11172937 intergenic Ugt35a - chr3R_10_11170001 chr3R_11170001 RAL-304_100b 3154 chr3R 11174567 11174615 chr3R 11175306 11175312 21 730 91.0 78.5 84.8 0.2 745 chr3R 11174567 exon Ugt86Dj - chr3R 11174940 intron Ugt86Dj - chr3R 11175312 exon Ugt86Dj - chr3R_21_11170001 chr3R_11170001 RAL-304_100b 3155 chr3R 11197957 11198012 chr3R 11198081 11198099 47 118 17.0 14.0 15.5 2.8 142 chr3R 11197957 intron cu + chr3R 11198028 intron cu + chr3R 11198099 intron cu + chr3R_47_11195001 chr3R_11195001 RAL-304_100b 3156 chr3R 11265908 11265910 chr3R 11266017 11266019 4 109 32.5 48.5 40.5 0.1 111 chr3R 11265908 intergenic not near genes chr3R 11265964 intergenic not near genes chr3R 11266019 intergenic not near genes chr3R_4_11265001 chr3R_11265001 RAL-304_100b 3157 chr3R 11265912 11265921 chr3R 11266015 11266030 13 107 26.5 48.0 37.2 0.3 118 chr3R 11265912 intergenic not near genes chr3R 11265971 intergenic not near genes chr3R 11266030 intergenic not near genes chr3R_13_11265001 chr3R_11265001 RAL-304_100b 3158 chr3R 11284928 11284937 chr3R 11285022 11285045 11 99 39.0 10.0 24.5 0.4 117 chr3R 11284928 intron CR31386 - chr3R 11284986 intron CR31386 - chr3R 11285045 intron CR31386 - chr3R_11_11280001 chr3R_11280001 RAL-304_100b 3159 chr3R 11284941 11284973 chr3R 11285021 11285057 27 99 15.0 9.5 12.2 2.0 116 chr3R 11284941 intron CR31386 - chr3R 11284999 intron CR31386 - chr3R 11285057 intron CR31386 - chr3R_27_11280001 chr3R_11280001 RAL-304_100b 3160 chr3R 11358323 11358348 chr3R 11358433 11358445 18 105 21.0 24.0 22.5 0.8 122 chr3R 11358323 intron pros + chr3R 11358384 intron pros + chr3R 11358445 intron pros + chr3R_18_11355001 chr3R_11355001 RAL-304_100b 3161 chr3R 11379216 11379261 chr3R 11388393 11388419 roo 33 9176 14.0 20.0 17.0 1.8 9203 chr3R 11379216 intron pros + chr3R 11383818 intron pros + chr3R 11388419 intron pros + chr3R_33_11380001 chr3R_11380001 RAL-304_100b 3162 chr3R 11444044 11444079 chr3R 11444167 11444192 22 121 3.5 18.0 10.8 1.9 148 chr3R 11444044 intron,intron sals -,CG17230 + chr3R 11444118 intron,intron sals -,CG17230 + chr3R 11444192 intron,intron sals -,CG17230 + chr3R_22_11440001 chr3R_11440001 RAL-304_100b 3163 chr3R 11513825 11513835 chr3R 11513933 11513943 4 108 37.0 24.5 30.8 0.1 118 chr3R 11513825 intergenic not near genes chr3R 11513884 intergenic not near genes chr3R 11513943 intergenic not near genes chr3R_4_11510001 chr3R_11510001 RAL-304_100b 3164 chr3R 11513836 11513877 chr3R 11513927 11513970 50 98 13.0 20.5 16.8 2.8 134 chr3R 11513836 intergenic not near genes chr3R 11513903 intergenic not near genes chr3R 11513970 intergenic not near genes chr3R_50_11510001 chr3R_11510001 RAL-304_100b 3165 chr3R 11518794 11518803 chr3R 11518910 11518919 10 115 32.0 21.5 26.8 0.4 125 chr3R 11518794 intergenic not near genes chr3R 11518856 intergenic not near genes chr3R 11518919 intergenic not near genes chr3R_10_11515001 chr3R_11515001 RAL-304_100b 3166 chr3R 11518805 11518846 chr3R 11518906 11518962 34 111 13.5 19.0 16.2 2.0 157 chr3R 11518805 intergenic not near genes chr3R 11518884 intergenic not near genes chr3R 11518962 intergenic not near genes chr3R_34_11515001 chr3R_11515001 RAL-304_100b 3167 chr3R 11528361 11528408 chr3R 11528563 11528580 50 197 24.5 16.0 20.2 2.4 219 chr3R 11528361 intergenic not near genes chr3R 11528470 intergenic not near genes chr3R 11528580 intergenic not near genes chr3R_50_11525001 chr3R_11525001 RAL-304_100b 3168 chr3R 11528409 11528416 chr3R 11528561 11528618 12 188 17.0 15.0 16.0 0.7 209 chr3R 11528409 intergenic not near genes chr3R 11528514 intergenic not near genes chr3R 11528618 intergenic not near genes chr3R_12_11525001 chr3R_11525001 RAL-304_100b 3169 chr3R 11545854 11545907 chr3R 11545996 11546048 24 141 5.5 9.5 7.5 2.8 194 chr3R 11545854 intergenic not near genes chr3R 11545951 intergenic not near genes chr3R 11546048 intergenic not near genes chr3R_24_11545001 chr3R_11545001 RAL-304_100b 3170 chr3R 11670965 11671018 chr3R 11671068 11671120 48 102 16.0 18.5 17.2 2.6 155 chr3R 11670965 exon CG42327 + chr3R 11671042 intron CG42327 + chr3R 11671120 intron CG42327 + chr3R_48_11670001 chr3R_11670001 RAL-304_100b 3171 chr3R 11693029 11693031 chr3R 29193496 29193513 4 17500476 66.0 42.0 54.0 0.1 17500484 chr3R 11693029 intergenic Fer3 - chr3R 20443271 intron Gfrl - chr3R 29193513 intron CG14509 - chr3R_4_20440001 chr3R_20440001 RAL-304_100b 3172 chr3R 11694702 11694752 chr3R 11694820 11694860 30 117 7.0 0.5 3.8 6.2 158 chr3R 11694702 intergenic Fer3 - chr3R 11694781 intergenic Fer3 - chr3R 11694860 intergenic not near genes chr3R_30_11690001 chr3R_11690001 RAL-304_100b 3173 chr3R 11710181 11710235 chr3R 11710284 11710338 58 99 15.5 16.5 16.0 3.4 157 chr3R 11710181 intergenic not near genes chr3R 11710260 intergenic not near genes chr3R 11710338 intergenic not near genes chr3R_58_11710001 chr3R_11710001 RAL-304_100b 3174 chr3R 11830325 11830360 chr3R 11830434 11830468 16 109 18.5 8.0 13.2 1.1 143 chr3R 11830325 intron CG6959 - chr3R 11830396 intron CG6959 - chr3R 11830468 intron CG6959 - chr3R_16_11830001 chr3R_11830001 RAL-304_100b 3175 chr3R 11841037 11841092 chr3R 11846253 11846301 BS 54 5212 27.0 21.0 24.0 2.2 5264 chr3R 11841037 intron CG6959 - chr3R 11843669 intron CG6959 - chr3R 11846301 intron CG6959 - chr3R_54_11840001 chr3R_11840001 RAL-304_100b 3176 chr3R 11853409 11853469 chr3R 11853583 11853641 35 171 0.5 8.0 4.2 6.7 232 chr3R 11853409 intron CG6959 - chr3R 11853525 intron CG6959 - chr3R 11853641 intron CG6959 - chr3R_35_11850001 chr3R_11850001 RAL-304_100b 3177 chr3R 11865820 11865878 chr3R 11865940 11865998 34 118 16.5 8.0 12.2 2.6 178 chr3R 11865820 intron CG6959 - chr3R 11865909 intron CG6959 - chr3R 11865998 intron CG6959 - chr3R_34_11865001 chr3R_11865001 RAL-304_100b 3178 chr3R 11916409 11916414 chr3R 11916512 11916518 5 104 39.5 16.5 28.0 0.2 109 chr3R 11916409 intron Cad87A - chr3R 11916464 intron Cad87A - chr3R 11916518 intron Cad87A - chr3R_5_11915001 chr3R_11915001 RAL-304_100b 3179 chr3R 11916431 11916455 chr3R 11916505 11916559 38 92 17.0 14.5 15.8 2.3 128 chr3R 11916431 intron Cad87A - chr3R 11916495 intron Cad87A - chr3R 11916559 intron Cad87A - chr3R_38_11915001 chr3R_11915001 RAL-304_100b 3180 chr3R 11928468 11928523 chr3R 11928606 11928661 46 133 13.5 11.5 12.5 3.4 193 chr3R 11928468 intron Cad87A - chr3R 11928564 intron Cad87A - chr3R 11928661 intron Cad87A - chr3R_46_11925001 chr3R_11925001 RAL-304_100b 3181 chr3R 11945361 11945406 chr3R 11945482 11945529 31 122 12.0 12.0 12.0 2.4 168 chr3R 11945361 intron Cad87A - chr3R 11945445 intron Cad87A - chr3R 11945529 intron Cad87A - chr3R_31_11945001 chr3R_11945001 RAL-304_100b 3182 chr3R 12022859 12022915 chr3R 12025061 12025117 pogo 44 2198 8.0 9.0 8.5 4.6 2258 chr3R 12022859 intergenic not near genes chr3R 12023988 intergenic not near genes chr3R 12025117 intergenic not near genes chr3R_44_12020001 chr3R_12020001 RAL-304_100b 3183 chr3R 12080839 12080897 chr3R 12080941 12081000 31 99 10.0 10.5 10.2 2.8 161 chr3R 12080839 intron CG14741 - chr3R 12080920 intron CG14741 - chr3R 12081000 intron CG14741 - chr3R_31_12080001 chr3R_12080001 RAL-304_100b 3184 chr3R 12102857 12102885 chr3R 12102972 12103005 30 116 32.5 47.0 39.8 0.7 148 chr3R 12102857 intron dpr17 + chr3R 12102931 intron dpr17 + chr3R 12103005 intron dpr17 + chr3R_30_12100001 chr3R_12100001 RAL-304_100b 3185 chr3R 12111866 12111924 chr3R 12111967 12112025 51 97 6.0 10.0 8.0 5.7 159 chr3R 12111866 intergenic dpr17 + chr3R 12111946 intergenic not near genes chr3R 12112025 intergenic not near genes chr3R_51_12110001 chr3R_12110001 RAL-304_100b 3186 chr3R 12112317 12112341 chr3R 12112437 12112461 17 115 25.5 18.0 21.8 0.7 144 chr3R 12112317 intergenic not near genes chr3R 12112389 intergenic not near genes chr3R 12112461 intergenic not near genes chr3R_17_12110001 chr3R_12110001 RAL-304_100b 3187 chr3R 12112343 12112367 chr3R 12112433 12112487 24 104 13.5 16.5 15.0 1.5 144 chr3R 12112343 intergenic not near genes chr3R 12112415 intergenic not near genes chr3R 12112487 intergenic not near genes chr3R_24_12110001 chr3R_12110001 RAL-304_100b 3188 chr3R 12117496 12117517 chr3R 12117904 12117931 19 412 24.0 23.5 23.8 0.8 435 chr3R 12117496 intergenic not near genes chr3R 12117714 intergenic not near genes chr3R 12117931 intergenic not near genes chr3R_19_12115001 chr3R_12115001 RAL-304_100b 3189 chr3R 12117522 12117525 chr3R 12117917 12117939 6 408 21.5 34.0 27.8 0.2 417 chr3R 12117522 intergenic not near genes chr3R 12117730 intergenic not near genes chr3R 12117939 intergenic not near genes chr3R_6_12115001 chr3R_12115001 RAL-304_100b 3190 chr3R 12117527 12117549 chr3R 12117904 12117952 29 400 12.5 23.5 18.0 1.5 425 chr3R 12117527 intergenic not near genes chr3R 12117740 intergenic not near genes chr3R 12117952 intergenic not near genes chr3R_29_12115001 chr3R_12115001 RAL-304_100b 3191 chr3R 12119849 12119907 chr3R 12119973 12119998 45 108 13.5 17.0 15.2 2.8 149 chr3R 12119849 intergenic not near genes chr3R 12119924 intergenic not near genes chr3R 12119998 intergenic not near genes chr3R_45_12115001 chr3R_12115001 RAL-304_100b 3192 chr3R 12120773 12120775 chr3R 12120879 12120881 4 106 44.0 10.0 27.0 0.1 108 chr3R 12120773 intergenic not near genes chr3R 12120827 intergenic not near genes chr3R 12120881 intergenic not near genes chr3R_4_12120001 chr3R_12120001 RAL-304_100b 3193 chr3R 12169213 12169220 chr3R 12169316 12169323 8 103 31.5 13.5 22.5 0.3 110 chr3R 12169213 intergenic not near genes chr3R 12169268 intergenic not near genes chr3R 12169323 intergenic not near genes chr3R_8_12165001 chr3R_12165001 RAL-304_100b 3194 chr3R 12174987 12175042 chr3R 12175377 12175432 47 383 14.5 12.0 13.2 3.3 445 chr3R 12174987 intergenic not near genes chr3R 12175210 intergenic not near genes chr3R 12175432 intergenic not near genes chr3R_47_12175001 chr3R_12175001 RAL-304_100b 3195 chr3R 12183151 12183204 chr3R 12183262 12183315 43 108 7.5 11.0 9.2 4.2 164 chr3R 12183151 intergenic not near genes chr3R 12183233 intergenic not near genes chr3R 12183315 intergenic not near genes chr3R_43_12180001 chr3R_12180001 RAL-304_100b 3196 chr3R 12247119 12247126 chr3R 12247229 12247235 5 110 44.0 17.5 30.8 0.2 116 chr3R 12247119 intergenic not near genes chr3R 12247177 intergenic not near genes chr3R 12247235 intergenic not near genes chr3R_5_12245001 chr3R_12245001 RAL-304_100b 3197 chr3R 12247127 12247139 chr3R 12247227 12247239 7 104 36.5 17.5 27.0 0.2 112 chr3R 12247127 intergenic not near genes chr3R 12247183 intergenic not near genes chr3R 12247239 intergenic not near genes chr3R_7_12245001 chr3R_12245001 RAL-304_100b 3198 chr3R 12247140 12247171 chr3R 12247225 12247281 43 107 14.0 16.0 15.0 2.7 141 chr3R 12247140 intergenic not near genes chr3R 12247210 intergenic not near genes chr3R 12247281 intergenic not near genes chr3R_43_12245001 chr3R_12245001 RAL-304_100b 3199 chr3R 12267851 12267889 chr3R 12267956 12267994 22 104 8.0 12.5 10.2 2.0 143 chr3R 12267851 intron svp + chr3R 12267922 intron svp + chr3R 12267994 intron svp + chr3R_22_12265001 chr3R_12265001 RAL-304_100b 3200 chr3R 12274649 12274668 chr3R 12274795 12274819 9 149 26.5 15.0 20.8 0.4 170 chr3R 12274649 intron svp + chr3R 12274734 intron svp + chr3R 12274819 intron svp + chr3R_9_12270001 chr3R_12270001 RAL-304_100b 3201 chr3R 12274669 12274702 chr3R 12274794 12274853 47 144 8.5 15.0 11.8 3.7 184 chr3R 12274669 intron svp + chr3R 12274761 intron svp + chr3R 12274853 intron svp + chr3R_47_12270001 chr3R_12270001 RAL-304_100b 3202 chr3R 12344109 12344158 chr3R 12344211 12344260 49 98 5.0 9.5 7.2 6.0 151 chr3R 12344109 intergenic not near genes chr3R 12344184 intergenic not near genes chr3R 12344260 intergenic not near genes chr3R_49_12340001 chr3R_12340001 RAL-304_100b 3203 chr3R 12348628 12348685 chr3R 12348758 12348792 50 125 12.5 19.5 16.0 2.9 164 chr3R 12348628 intergenic CG10038 - chr3R 12348710 intergenic CG10038 - chr3R 12348792 intergenic CG10038 - chr3R_50_12345001 chr3R_12345001 RAL-304_100b 3204 chr3R 12396737 12396744 chr3R 12403563 12403570 4 6826 19.0 67.0 43.0 0.1 6833 chr3R 12396737 intron CG34402 + chr3R 12400154 intron,exon CG34402 +,lig3 - chr3R 12403570 exon Cyp9f2 - chr3R_4_12400001 chr3R_12400001 RAL-304_100b 3205 chr3R 12399787 12399795 chr3R 12403822 12403830 11 4034 123.5 175.0 149.2 0.1 4043 chr3R 12399787 intron,exon CG34402 +,lig3 - chr3R 12401808 exon,5` UTR CG34402 +,lig3 - chr3R 12403830 exon Cyp9f2 - chr3R_11_12400001 chr3R_12400001 RAL-304_100b 3206 chr3R 12399796 12399816 chr3R 12403821 12403851 21 4032 109.0 176.0 142.5 0.1 4055 chr3R 12399796 intron,exon CG34402 +,lig3 - chr3R 12401824 exon,5` UTR CG34402 +,lig3 - chr3R 12403851 exon Cyp9f2 - chr3R_21_12400001 chr3R_12400001 RAL-304_100b 3207 chr3R 12396835 12396836 chr3R 12399819 12399820 4 2984 13.5 123.0 68.2 0.1 2985 chr3R 12396835 intron CG34402 + chr3R 12398328 intron CG34402 + chr3R 12399820 intron,exon CG34402 +,lig3 - chr3R_4_12395001 chr3R_12395001 RAL-304_100b 3208 chr3R 12396835 12396843 chr3R 12399826 12399827 6 2988 13.5 119.0 66.2 0.1 2992 chr3R 12396835 intron CG34402 + chr3R 12398331 intron CG34402 + chr3R 12399827 intron,exon CG34402 +,lig3 - chr3R_6_12395001 chr3R_12395001 RAL-304_100b 3209 chr3R 12396850 12396851 chr3R 12399839 12399844 5 2988 13.5 109.5 61.5 0.1 2994 chr3R 12396850 intron CG34402 + chr3R 12398347 intron CG34402 + chr3R 12399844 intron,exon CG34402 +,lig3 - chr3R_5_12395001 chr3R_12395001 RAL-304_100b 3210 chr3R 12516038 12516091 chr3R 12516158 12516211 30 118 9.0 10.5 9.8 2.8 173 chr3R 12516038 intron Octbeta3R - chr3R 12516124 intron Octbeta3R - chr3R 12516211 intron Octbeta3R - chr3R_30_12515001 chr3R_12515001 RAL-304_100b 3211 chr3R 12546437 12546486 chr3R 12546535 12546588 42 105 14.0 15.0 14.5 2.7 151 chr3R 12546437 intron Octbeta3R - chr3R 12546512 intron Octbeta3R - chr3R 12546588 intron Octbeta3R - chr3R_42_12545001 chr3R_12545001 RAL-304_100b 3212 chr3R 12599349 12599405 chr3R 12599457 12599513 63 104 14.0 14.0 14.0 4.2 164 chr3R 12599349 intergenic not near genes chr3R 12599431 intergenic not near genes chr3R 12599513 intergenic not near genes chr3R_63_12595001 chr3R_12595001 RAL-304_100b 3213 chr3R 12628591 12628604 chr3R 12628699 12628709 16 107 58.0 25.5 41.8 0.4 118 chr3R 12628591 intron Snx3 + chr3R 12628650 intron Snx3 + chr3R 12628709 intron Snx3 + chr3R_16_12625001 chr3R_12625001 RAL-304_100b 3214 chr3R 12628608 12628633 chr3R 12628698 12628721 24 97 32.5 24.5 28.5 0.8 113 chr3R 12628608 intron Snx3 + chr3R 12628664 intron Snx3 + chr3R 12628721 intron Snx3 + chr3R_24_12625001 chr3R_12625001 RAL-304_100b 3215 chr3R 12678661 12678668 chr3R 12684207 12684239 26 5553 99.0 144.0 121.5 0.2 5578 chr3R 12678661 exon mbo - chr3R 12681450 intergenic Cyp313a4 - chr3R 12684239 exon kar - chr3R_26_12680001 chr3R_12680001 RAL-304_100b 3216 chr3R 12704814 12704864 chr3R 12704918 12704968 21 100 6.0 9.5 7.8 2.4 154 chr3R 12704814 3` UTR Past1 + chr3R 12704891 intergenic Past1 +,CG12279 + chr3R 12704968 intergenic Past1 +,CG12279 + chr3R_21_12700001 chr3R_12700001 RAL-304_100b 3217 chr3R 12763086 12763152 chr3R 12763199 12763254 19 101 0.0 7.0 3.5 4.2 168 chr3R 12763086 intron beat-Vc - chr3R 12763170 intron beat-Vc - chr3R 12763254 intron beat-Vc - chr3R_19_12760001 chr3R_12760001 RAL-304_100b 3218 chr3R 12779170 12779217 chr3R 12779262 12779318 50 96 17.0 16.5 16.8 2.8 148 chr3R 12779170 intron beat-Vc - chr3R 12779244 intron beat-Vc - chr3R 12779318 intron beat-Vc - chr3R_50_12775001 chr3R_12775001 RAL-304_100b 3219 chr3R 12780283 12780303 chr3R 12780420 12780440 BS 19 137 0.5 0.0 0.2 15.8 157 chr3R 12780283 intron beat-Vc - chr3R 12780362 intron beat-Vc - chr3R 12780440 intron beat-Vc - chr3R_19_12780001 chr3R_12780001 RAL-304_100b 3220 chr3R 12787929 12787956 chr3R 12788035 12788064 16 107 12.0 19.0 15.5 1.0 135 chr3R 12787929 intergenic not near genes chr3R 12787996 intergenic not near genes chr3R 12788064 intergenic not near genes chr3R_16_12785001 chr3R_12785001 RAL-304_100b 3221 chr3R 12836316 12836373 chr3R 12836418 12836475 51 98 13.0 5.5 9.2 5.0 159 chr3R 12836316 intergenic not near genes chr3R 12836396 intergenic not near genes chr3R 12836475 intergenic not near genes chr3R_51_12835001 chr3R_12835001 RAL-304_100b 3222 chr3R 12864561 12864591 chr3R 12865071 12865101 roo 7 510 2.0 14.5 8.2 0.8 540 chr3R 12864561 intergenic not near genes chr3R 12864831 intergenic not near genes chr3R 12865101 intergenic not near genes chr3R_7_12860001 chr3R_12860001 RAL-304_100b 3223 chr3R 12866462 12866518 chr3R 12866638 12866669 45 173 12.5 8.5 10.5 3.9 207 chr3R 12866462 intergenic not near genes chr3R 12866566 intergenic not near genes chr3R 12866669 intergenic not near genes chr3R_45_12865001 chr3R_12865001 RAL-304_100b 3224 chr3R 12894583 12894625 chr3R 12894713 12894763 8 132 0.5 0.0 0.2 6.7 180 chr3R 12894583 intergenic not near genes chr3R 12894673 intergenic not near genes chr3R 12894763 intergenic not near genes chr3R_8_12890001 chr3R_12890001 RAL-304_100b 3225 chr3R 12920126 12920185 chr3R 12925354 12925401 copia 49 5222 10.5 16.0 13.2 3.5 5275 chr3R 12920126 intron beat-Vb + chr3R 12922764 intron beat-Vb + chr3R 12925401 intron beat-Vb + chr3R_49_12920001 chr3R_12920001 RAL-304_100b 3226 chr3R 12972532 12972583 chr3R 12972696 12972747 44 164 13.5 7.5 10.5 3.8 215 chr3R 12972532 intron CG7381 - chr3R 12972640 intron CG7381 - chr3R 12972747 intron CG7381 - chr3R_44_12970001 chr3R_12970001 RAL-304_100b 3227 chr3R 13059936 13059977 chr3R 13060156 13060197 33 219 10.5 7.5 9.0 3.3 261 chr3R 13059936 intron sim + chr3R 13060066 intron sim + chr3R 13060197 intron sim + chr3R_33_13060001 chr3R_13060001 RAL-304_100b 3228 chr3R 13061858 13061911 chr3R 13061975 13062031 23 120 13.5 12.5 13.0 1.6 173 chr3R 13061858 intron sim + chr3R 13061944 intron sim + chr3R 13062031 intron sim + chr3R_23_13060001 chr3R_13060001 RAL-304_100b 3229 chr3R 13066979 13067180 chr3R 13067091 13067316 58 130 9.0 10.5 9.8 5.4 337 chr3R 13066979 intron sim + chr3R 13067148 intron sim + chr3R 13067316 intron sim + chr3R_58_13065001 chr3R_13065001 RAL-304_100b 3230 chr3R 13073953 13074007 chr3R 13074057 13074061 50 99 10.5 16.0 13.2 3.5 108 chr3R 13073953 intron sim + chr3R 13074007 intron sim + chr3R 13074061 intron sim + chr3R_50_13070001 chr3R_13070001 RAL-304_100b 3231 chr3R 13075349 13075389 chr3R 13075455 13075495 24 104 11.0 14.0 12.5 1.8 146 chr3R 13075349 intron sim + chr3R 13075422 intron sim + chr3R 13075495 intron sim + chr3R_24_13075001 chr3R_13075001 RAL-304_100b 3232 chr3R 13120746 13120801 chr3R 13120848 13120903 60 96 17.0 13.5 15.2 3.7 157 chr3R 13120746 intron timeout + chr3R 13120824 intron timeout + chr3R 13120903 intron timeout + chr3R_60_13120001 chr3R_13120001 RAL-304_100b 3233 chr3R 13135811 13135852 chr3R 13138001 13138042 pogo 27 2187 10.5 15.0 12.8 2.0 2231 chr3R 13135811 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13136926 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13138042 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_27_13135001 chr3R_13135001 RAL-304_100b 3234 chr3R 13143016 13143020 chr3R 13148617 13148621 mdg3 4 5601 38.5 22.5 30.5 0.1 5605 chr3R 13143016 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13145818 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13148621 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_4_13145001 chr3R_13145001 RAL-304_100b 3235 chr3R 13143021 13143066 chr3R 13148615 13148667 mdg3 61 5591 14.5 21.5 18.0 3.2 5646 chr3R 13143021 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13145844 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13148667 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_61_13145001 chr3R_13145001 RAL-304_100b 3236 chr3R 13164510 13164569 chr3R 13165616 13165675 64 1101 72.0 83.5 77.8 0.8 1165 chr3R 13164510 intergenic not near genes chr3R 13165092 intergenic not near genes chr3R 13165675 intergenic not near genes chr3R_64_13165001 chr3R_13165001 RAL-304_100b 3237 chr3R 13163293 13163349 chr3R 13165882 13165937 47 2590 148.0 92.0 120.0 0.4 2644 chr3R 13163293 exon timeout + chr3R 13164615 intergenic not near genes chr3R 13165937 intergenic not near genes chr3R_47_13160001 chr3R_13160001 RAL-304_100b 3238 chr3R 13173419 13173475 chr3R 13173526 13173582 49 100 14.0 6.0 10.0 4.5 163 chr3R 13173419 intergenic not near genes chr3R 13173500 intergenic not near genes chr3R 13173582 intergenic not near genes chr3R_49_13170001 chr3R_13170001 RAL-304_100b 3239 chr3R 13222740 13222797 chr3R 13222849 13222890 33 98 17.5 18.0 17.8 1.8 150 chr3R 13222740 intergenic Ace - chr3R 13222815 intergenic Ace - chr3R 13222890 intergenic Ace - chr3R_33_13220001 chr3R_13220001 RAL-304_100b 3240 chr3R 13314072 13314128 chr3R 13318884 13318895 Doc 24 4810 15.0 13.0 14.0 1.6 4823 chr3R 13314072 intergenic not near genes chr3R 13316484 intergenic not near genes chr3R 13318895 intergenic CG45080 - chr3R_24_13315001 chr3R_13315001 RAL-304_100b 3241 chr3R 13348984 13349017 chr3R 13349085 13349118 18 98 13.0 11.5 12.2 1.4 134 chr3R 13348984 intergenic not near genes chr3R 13349051 intergenic not near genes chr3R 13349118 intergenic not near genes chr3R_18_13345001 chr3R_13345001 RAL-304_100b 3242 chr3R 13349018 13349034 chr3R 13349083 13349130 13 92 9.0 10.5 9.8 1.2 112 chr3R 13349018 intergenic not near genes chr3R 13349074 intergenic not near genes chr3R 13349130 intergenic not near genes chr3R_13_13345001 chr3R_13345001 RAL-304_100b 3243 chr3R 13349918 13349977 chr3R 13350032 13350087 37 107 9.5 15.0 12.2 2.8 169 chr3R 13349918 intergenic not near genes chr3R 13350002 intergenic not near genes chr3R 13350087 intergenic not near genes chr3R_37_13350001 chr3R_13350001 RAL-304_100b 3244 chr3R 13418639 13418683 chr3R 13418740 13418784 33 99 9.0 5.5 7.2 4.0 145 chr3R 13418639 intergenic not near genes chr3R 13418712 intergenic not near genes chr3R 13418784 intergenic not near genes chr3R_33_13415001 chr3R_13415001 RAL-304_100b 3245 chr3R 13505833 13505850 chr3R 13505934 13505946 10 100 34.5 17.0 25.8 0.4 113 chr3R 13505833 intergenic not near genes chr3R 13505890 intergenic not near genes chr3R 13505946 intergenic not near genes chr3R_10_13505001 chr3R_13505001 RAL-304_100b 3246 chr3R 13505851 13505868 chr3R 13505930 13505969 16 97 27.0 16.0 21.5 0.7 118 chr3R 13505851 intergenic not near genes chr3R 13505910 intergenic not near genes chr3R 13505969 intergenic not near genes chr3R_16_13505001 chr3R_13505001 RAL-304_100b 3247 chr3R 13517202 13517252 chr3R 13520044 13520094 jockey 14 2842 8.5 0.0 4.2 2.7 2892 chr3R 13517202 intergenic not near genes chr3R 13518648 intergenic not near genes chr3R 13520094 intergenic not near genes chr3R_14_13515001 chr3R_13515001 RAL-304_100b 3248 chr3R 13532992 13533051 chr3R 13533270 13533329 45 275 9.5 11.5 10.5 3.9 337 chr3R 13532992 intergenic not near genes chr3R 13533160 intergenic not near genes chr3R 13533329 intergenic not near genes chr3R_45_13530001 chr3R_13530001 RAL-304_100b 3249 chr3R 13552162 13552209 chr3R 13552287 13552333 37 114 19.5 12.0 15.8 2.2 171 chr3R 13552162 intergenic not near genes chr3R 13552248 intergenic not near genes chr3R 13552333 intergenic not near genes chr3R_37_13550001 chr3R_13550001 RAL-304_100b 3250 chr3R 13580825 13580831 chr3R 13580922 13580933 7 101 35.0 51.5 43.2 0.2 108 chr3R 13580825 intergenic not near genes chr3R 13580879 intergenic not near genes chr3R 13580933 intergenic not near genes chr3R_7_13580001 chr3R_13580001 RAL-304_100b 3251 chr3R 13603030 13603077 chr3R 13603146 13603193 37 115 15.0 8.5 11.8 2.9 163 chr3R 13603030 intergenic not near genes chr3R 13603112 intergenic not near genes chr3R 13603193 intergenic not near genes chr3R_37_13600001 chr3R_13600001 RAL-304_100b 3252 chr3R 13625666 13625723 chr3R 13625772 13625816 17 103 10.0 6.0 8.0 1.9 150 chr3R 13625666 intergenic not near genes chr3R 13625741 intergenic not near genes chr3R 13625816 intergenic not near genes chr3R_17_13625001 chr3R_13625001 RAL-304_100b 3253 chr3R 13659712 13659717 chr3R 13659843 13659848 4 131 0.0 0.0 0.0 4.0 136 chr3R 13659712 intron Hrb87F - chr3R 13659780 intron Hrb87F - chr3R 13659848 intron Hrb87F - chr3R_4_13655001 chr3R_13655001 RAL-304_100b 3254 chr3R 13672916 13672919 chr3R 13673019 13673022 9 103 38.0 10.0 24.0 0.4 106 chr3R 13672916 intron Task6 - chr3R 13672969 intron Task6 - chr3R 13673022 intron Task6 - chr3R_9_13670001 chr3R_13670001 RAL-304_100b 3255 chr3R 13672920 13672975 chr3R 13673018 13673043 40 98 9.0 10.0 9.5 3.8 123 chr3R 13672920 intron Task6 - chr3R 13672982 intron Task6 - chr3R 13673043 intron Task6 - chr3R_40_13670001 chr3R_13670001 RAL-304_100b 3256 chr3R 13693028 13693028 chr3R 21907534 21907536 70 8214507 56.5 76.0 66.2 1.0 8214508 chr3R 13693028 3` UTR flfl + chr3R 17800282 exon CG17803 - chr3R 21907536 intergenic CG6678 + chr3R_70_17800001 chr3R_17800001 RAL-304_100b 3257 chr3R 13719926 13719983 chr3R 13720410 13720448 44 479 9.5 14.5 12.0 3.4 522 chr3R 13719926 intron CG34383 + chr3R 13720187 intron CG34383 + chr3R 13720448 intron CG34383 + chr3R_44_13720001 chr3R_13720001 RAL-304_100b 3258 chr3R 13736729 13736738 chr3R 13736837 13736846 5 108 41.0 17.0 29.0 0.2 117 chr3R 13736729 intron CG34383 + chr3R 13736788 intron CG34383 + chr3R 13736846 intron CG34383 + chr3R_5_13735001 chr3R_13735001 RAL-304_100b 3259 chr3R 13736739 13736786 chr3R 13736830 13736859 40 104 15.5 14.0 14.8 2.5 120 chr3R 13736739 intron CG34383 + chr3R 13736799 intron CG34383 + chr3R 13736859 intron CG34383 + chr3R_40_13735001 chr3R_13735001 RAL-304_100b 3260 chr3R 13758138 13758170 chr3R 13758236 13758281 11 106 0.0 13.5 6.8 1.4 143 chr3R 13758138 intron CG34383 + chr3R 13758210 intron CG34383 + chr3R 13758281 intron CG34383 + chr3R_11_13755001 chr3R_13755001 RAL-304_100b 3261 chr3R 13831808 13831816 chr3R 13831932 13831940 5 124 11.5 0.0 5.8 0.7 132 chr3R 13831808 intergenic not near genes chr3R 13831874 intergenic not near genes chr3R 13831940 intergenic not near genes chr3R_5_13830001 chr3R_13830001 RAL-304_100b 3262 chr3R 13850286 13850342 chr3R 13850406 13850455 31 110 0.0 18.0 9.0 3.1 169 chr3R 13850286 intergenic not near genes chr3R 13850370 intergenic not near genes chr3R 13850455 intergenic not near genes chr3R_31_13850001 chr3R_13850001 RAL-304_100b 3263 chr3R 13885411 13885419 chr3R 13885513 13885519 5 100 26.5 13.5 20.0 0.2 108 chr3R 13885411 intergenic not near genes chr3R 13885465 intergenic not near genes chr3R 13885519 intergenic not near genes chr3R_5_13885001 chr3R_13885001 RAL-304_100b 3264 chr3R 13885421 13885438 chr3R 13885508 13885540 17 94 15.5 12.5 14.0 1.1 119 chr3R 13885421 intergenic not near genes chr3R 13885480 intergenic not near genes chr3R 13885540 intergenic not near genes chr3R_17_13885001 chr3R_13885001 RAL-304_100b 3265 chr3R 13909891 13909909 chr3R 13909995 13909998 14 102 12.5 19.0 15.8 0.8 107 chr3R 13909891 intergenic not near genes chr3R 13909944 intergenic not near genes chr3R 13909998 intergenic not near genes chr3R_14_13905001 chr3R_13905001 RAL-304_100b 3266 chr3R 13994278 13994331 chr3R 13994556 13994611 29 279 10.5 7.5 9.0 2.9 333 chr3R 13994278 intron rdx - chr3R 13994444 intron rdx - chr3R 13994611 intron rdx - chr3R_29_13990001 chr3R_13990001 RAL-304_100b 3267 chr3R 14014257 14014268 chr3R 14014414 14014425 5 157 21.5 0.0 10.8 0.4 168 chr3R 14014257 intron rdx - chr3R 14014341 intron rdx - chr3R 14014425 intron rdx - chr3R_5_14010001 chr3R_14010001 RAL-304_100b 3268 chr3R 14014270 14014281 chr3R 14014412 14014428 6 153 15.5 0.0 7.8 0.7 158 chr3R 14014270 intron rdx - chr3R 14014349 intron rdx - chr3R 14014428 intron rdx - chr3R_6_14010001 chr3R_14010001 RAL-304_100b 3269 chr3R 14037560 14037579 chr3R 14037664 14037673 14 103 33.5 0.5 17.0 0.8 113 chr3R 14037560 intergenic not near genes chr3R 14037616 intergenic not near genes chr3R 14037673 intergenic not near genes chr3R_14_14035001 chr3R_14035001 RAL-304_100b 3270 chr3R 14047746 14047800 chr3R 14047862 14047915 17 115 0.0 7.0 3.5 3.8 169 chr3R 14047746 intergenic not near genes chr3R 14047830 intergenic not near genes chr3R 14047915 intergenic not near genes chr3R_17_14045001 chr3R_14045001 RAL-304_100b 3271 chr3R 14058098 14058146 chr3R 14058243 14058291 23 145 12.0 5.0 8.5 2.4 193 chr3R 14058098 5` UTR foxo + chr3R 14058194 intron foxo + chr3R 14058291 intron foxo + chr3R_23_14055001 chr3R_14055001 RAL-304_100b 3272 chr3R 14109070 14109106 chr3R 14109164 14109197 9 102 3.5 0.0 1.8 3.2 127 chr3R 14109070 intergenic CR44237 -,Or88a + chr3R 14109134 intergenic CR44237 -,Or88a + chr3R 14109197 intergenic CR44237 -,Or88a + chr3R_9_14105001 chr3R_14105001 RAL-304_100b 3273 chr3R 14117419 14117436 chr3R 14117520 14117522 13 99 12.5 13.5 13.0 0.9 103 chr3R 14117419 intron Kif19A - chr3R 14117470 intron Kif19A - chr3R 14117522 intron Kif19A - chr3R_13_14115001 chr3R_14115001 RAL-304_100b 3274 chr3R 14117438 14117470 chr3R 14117514 14117536 25 96 11.5 13.5 12.5 1.9 98 chr3R 14117438 intron Kif19A - chr3R 14117487 intron Kif19A - chr3R 14117536 intron Kif19A - chr3R_25_14115001 chr3R_14115001 RAL-304_100b 3275 chr3R 14163631 14163689 chr3R 14163732 14163790 39 97 13.0 8.5 10.8 3.3 159 chr3R 14163631 intergenic CG3199 + chr3R 14163710 intergenic CG3199 + chr3R 14163790 intergenic CG3199 + chr3R_39_14160001 chr3R_14160001 RAL-304_100b 3276 chr3R 14174934 14174970 chr3R 14175046 14175082 33 106 27.0 13.5 20.2 1.6 148 chr3R 14174934 3` UTR Dop1R1 - chr3R 14175008 3` UTR Dop1R1 - chr3R 14175082 3` UTR Dop1R1 - chr3R_33_14175001 chr3R_14175001 RAL-304_100b 3277 chr3R 14174975 14174991 chr3R 14175044 14175088 13 87 13.0 13.0 13.0 0.9 113 chr3R 14174975 3` UTR Dop1R1 - chr3R 14175032 3` UTR Dop1R1 - chr3R 14175088 3` UTR Dop1R1 - chr3R_13_14175001 chr3R_14175001 RAL-304_100b 3278 chr3R 14180786 14180834 chr3R 14185576 14185624 F-element 17 4789 8.0 11.0 9.5 1.6 4838 chr3R 14180786 intron Dop1R1 - chr3R 14183205 intron Dop1R1 - chr3R 14185624 intron Dop1R1 - chr3R_17_14180001 chr3R_14180001 RAL-304_100b 3279 chr3R 14194412 14194458 chr3R 14203580 14203623 roo 42 9172 11.5 11.5 11.5 3.4 9211 chr3R 14194412 intron Dop1R1 - chr3R 14199018 intron Dop1R1 - chr3R 14203623 intron Dop1R1 - chr3R_42_14195001 chr3R_14195001 RAL-304_100b 3280 chr3R 14246371 14246418 chr3R 14247888 14247932 jockey 56 1512 18.5 24.0 21.2 2.5 1561 chr3R 14246371 intergenic not near genes chr3R 14247152 intergenic not near genes chr3R 14247932 intergenic not near genes chr3R_56_14245001 chr3R_14245001 RAL-304_100b 3281 chr3R 14249285 14249340 chr3R 14249390 14249448 48 106 11.0 14.5 12.8 3.5 163 chr3R 14249285 intergenic not near genes chr3R 14249366 intergenic not near genes chr3R 14249448 intergenic not near genes chr3R_48_14245001 chr3R_14245001 RAL-304_100b 3282 chr3R 14256757 14256768 chr3R 14256868 14256879 10 111 12.0 14.5 13.2 0.7 122 chr3R 14256757 intron,3` UTR Aats-met -,CG43179 + chr3R 14256818 intron,3` UTR Aats-met -,CG43179 + chr3R 14256879 intron,3` UTR Aats-met -,CG43179 + chr3R_10_14255001 chr3R_14255001 RAL-304_100b 3283 chr3R 14294013 14294069 chr3R 14294116 14294157 50 99 9.0 11.0 10.0 4.5 144 chr3R 14294013 intron CG12207 + chr3R 14294085 intron CG12207 + chr3R 14294157 intron CG12207 + chr3R_50_14290001 chr3R_14290001 RAL-304_100b 3284 chr3R 14327665 14327723 chr3R 14327772 14327830 35 105 13.5 9.5 11.5 2.8 165 chr3R 14327665 3` UTR CG3321 + chr3R 14327748 intergenic CG3321 +,spn-B + chr3R 14327830 intergenic CG3321 +,spn-B + chr3R_35_14325001 chr3R_14325001 RAL-304_100b 3285 chr3R 14343420 14343472 chr3R 14343543 14343595 27 120 4.5 8.0 6.2 3.8 175 chr3R 14343420 intron NK7.1 - chr3R 14343508 intron NK7.1 - chr3R 14343595 intron NK7.1 - chr3R_27_14340001 chr3R_14340001 RAL-304_100b 3286 chr3R 14374551 14374568 chr3R 14374685 14374704 8 136 42.5 11.5 27.0 0.3 153 chr3R 14374551 intergenic not near genes chr3R 14374628 intergenic not near genes chr3R 14374704 intergenic not near genes chr3R_8_14370001 chr3R_14370001 RAL-304_100b 3287 chr3R 14386192 14386237 chr3R 14386298 14386346 12 106 0.0 14.0 7.0 1.5 154 chr3R 14386192 intergenic not near genes chr3R 14386269 intergenic not near genes chr3R 14386346 intergenic not near genes chr3R_12_14385001 chr3R_14385001 RAL-304_100b 3288 chr3R 14440696 14440754 chr3R 14440797 14440844 44 98 8.5 11.5 10.0 4.0 148 chr3R 14440696 intron cv-c - chr3R 14440770 intron cv-c - chr3R 14440844 intron cv-c - chr3R_44_14440001 chr3R_14440001 RAL-304_100b 3289 chr3R 14556560 14556613 chr3R 14556676 14556729 24 115 14.0 5.5 9.8 2.2 169 chr3R 14556560 intron Pde6 - chr3R 14556644 intron Pde6 - chr3R 14556729 intron Pde6 - chr3R_24_14555001 chr3R_14555001 RAL-304_100b 3290 chr3R 14608444 14608476 chr3R 14608561 14608593 18 117 6.0 15.5 10.8 1.5 149 chr3R 14608444 intergenic stumps + chr3R 14608518 intergenic stumps + chr3R 14608593 intergenic not near genes chr3R_18_14605001 chr3R_14605001 RAL-304_100b 3291 chr3R 14635125 14635137 chr3R 14635226 14635237 7 101 27.5 11.5 19.5 0.3 112 chr3R 14635125 intron,intron CG7886 -,Cad88C + chr3R 14635181 intron,intron CG7886 -,Cad88C + chr3R 14635237 intron,intron CG7886 -,Cad88C + chr3R_7_14635001 chr3R_14635001 RAL-304_100b 3292 chr3R 14635140 14635177 chr3R 14635220 14635263 26 98 14.0 14.5 14.2 1.7 123 chr3R 14635140 intron,intron CG7886 -,Cad88C + chr3R 14635202 intron,intron CG7886 -,Cad88C + chr3R 14635263 intron,intron CG7886 -,Cad88C + chr3R_26_14635001 chr3R_14635001 RAL-304_100b 3293 chr3R 14677568 14677572 chr3R 14677670 14677674 5 102 0.0 32.0 16.0 0.3 106 chr3R 14677568 intron Meltrin - chr3R 14677621 intron Meltrin - chr3R 14677674 intron Meltrin - chr3R_5_14675001 chr3R_14675001 RAL-304_100b 3294 chr3R 14688100 14688143 chr3R 14688206 14688249 9 102 15.0 0.0 7.5 1.1 149 chr3R 14688100 intron Meltrin - chr3R 14688174 intron Meltrin - chr3R 14688249 intron Meltrin - chr3R_9_14685001 chr3R_14685001 RAL-304_100b 3295 chr3R 14775975 14775982 chr3R 14776091 14776098 5 116 28.0 12.5 20.2 0.2 123 chr3R 14775975 intron jvl + chr3R 14776036 intron jvl + chr3R 14776098 intron jvl + chr3R_5_14775001 chr3R_14775001 RAL-304_100b 3296 chr3R 14775985 14776033 chr3R 14776090 14776138 44 105 11.0 12.0 11.5 3.5 153 chr3R 14775985 intron jvl + chr3R 14776062 intron jvl + chr3R 14776138 intron jvl + chr3R_44_14775001 chr3R_14775001 RAL-304_100b 3297 chr3R 14842540 14842597 chr3R 14842649 14842696 49 103 10.0 12.5 11.2 4.0 156 chr3R 14842540 intron btsz - chr3R 14842618 intron btsz - chr3R 14842696 intron btsz - chr3R_49_14840001 chr3R_14840001 RAL-304_100b 3298 chr3R 14878411 14878434 chr3R 14879273 14879296 25 862 29.0 17.5 23.2 1.0 885 chr3R 14878411 intergenic not near genes chr3R 14878854 intergenic not near genes chr3R 14879296 intergenic CG3631 + chr3R_25_14875001 chr3R_14875001 RAL-304_100b 3299 chr3R 14878436 14878471 chr3R 14879272 14879333 40 858 12.0 16.5 14.2 2.6 897 chr3R 14878436 intergenic not near genes chr3R 14878884 intergenic not near genes chr3R 14879333 intergenic CG3631 + chr3R_40_14875001 chr3R_14875001 RAL-304_100b 3300 chr3R 14944874 14944896 chr3R 14944980 14945000 13 105 26.5 22.5 24.5 0.5 126 chr3R 14944874 intergenic not near genes chr3R 14944937 intergenic not near genes chr3R 14945000 intergenic not near genes chr3R_13_14940001 chr3R_14940001 RAL-304_100b 3301 chr3R 14964924 14964980 chr3R 14965211 14965232 41 275 13.5 18.0 15.8 2.4 308 chr3R 14964924 intergenic not near genes chr3R 14965078 intergenic not near genes chr3R 14965232 intergenic not near genes chr3R_41_14965001 chr3R_14965001 RAL-304_100b 3302 chr3R 14979038 14979098 chr3R 14979143 14979202 24 102 7.5 15.5 11.5 1.9 164 chr3R 14979038 intergenic not near genes chr3R 14979120 intergenic not near genes chr3R 14979202 intergenic not near genes chr3R_24_14975001 chr3R_14975001 RAL-304_100b 3303 chr3R 15032454 15032463 chr3R 15032566 15032575 6 112 0.0 9.5 4.8 1.0 121 chr3R 15032454 intergenic not near genes chr3R 15032514 intergenic not near genes chr3R 15032575 intergenic not near genes chr3R_6_15030001 chr3R_15030001 RAL-304_100b 3304 chr3R 15041402 15041418 chr3R 15045186 15045227 Doc 13 3804 0.0 7.0 3.5 2.9 3825 chr3R 15041402 intergenic not near genes chr3R 15043314 intergenic not near genes chr3R 15045227 intergenic not near genes chr3R_13_15040001 chr3R_15040001 RAL-304_100b 3305 chr3R 15059252 15059267 chr3R 15059471 15059478 BS 5 216 14.0 0.0 7.0 0.6 226 chr3R 15059252 intron dpr9 - chr3R 15059365 intron dpr9 - chr3R 15059478 intron dpr9 - chr3R_5_15055001 chr3R_15055001 RAL-304_100b 3306 chr3R 15059301 15059307 chr3R 15059469 15059560 BS 7 240 13.5 0.0 6.8 0.9 259 chr3R 15059301 intron dpr9 - chr3R 15059430 intron dpr9 - chr3R 15059560 intron dpr9 - chr3R_7_15055001 chr3R_15055001 RAL-304_100b 3307 chr3R 15059308 15059478 chr3R 15059467 15059590 BS 23 160 0.0 0.0 0.0 23.0 282 chr3R 15059308 intron dpr9 - chr3R 15059449 intron dpr9 - chr3R 15059590 intron dpr9 - chr3R_23_15055001 chr3R_15055001 RAL-304_100b 3308 chr3R 15061021 15061032 chr3R 15061119 15061138 15 105 13.0 16.0 14.5 1.0 117 chr3R 15061021 intron dpr9 - chr3R 15061080 intron dpr9 - chr3R 15061138 intron dpr9 - chr3R_15_15060001 chr3R_15060001 RAL-304_100b 3309 chr3R 15088063 15088104 chr3R 15088170 15088196 9 114 16.0 0.0 8.0 1.0 133 chr3R 15088063 intron CG6966 - chr3R 15088130 intron CG6966 - chr3R 15088196 intron CG6966 - chr3R_9_15085001 chr3R_15085001 RAL-304_100b 3310 chr3R 15102487 15102531 chr3R 15109770 15109810 412 15 7282 5.5 14.0 9.8 1.4 7323 chr3R 15102487 intron CG42788 - chr3R 15106148 intron CG42788 - chr3R 15109810 intron CG42788 - chr3R_15_15105001 chr3R_15105001 RAL-304_100b 3311 chr3R 15114894 15114941 chr3R 15114996 15114997 20 97 8.5 11.5 10.0 1.8 103 chr3R 15114894 intron CG42788 - chr3R 15114946 intron CG42788 - chr3R 15114997 intron CG42788 - chr3R_20_15110001 chr3R_15110001 RAL-304_100b 3312 chr3R 15119512 15119559 chr3R 15119618 15119654 35 98 20.5 15.0 17.8 1.9 142 chr3R 15119512 intron CG42788 - chr3R 15119583 intron CG42788 - chr3R 15119654 intron CG42788 - chr3R_35_15115001 chr3R_15115001 RAL-304_100b 3313 chr3R 15132046 15132057 chr3R 15135126 15135142 Juan 11 3084 33.0 26.0 29.5 0.4 3096 chr3R 15132046 intergenic CG42788 - chr3R 15133594 intergenic not near genes chr3R 15135142 3` UTR CG6912 - chr3R_11_15130001 chr3R_15130001 RAL-304_100b 3314 chr3R 15132059 15132076 chr3R 15135119 15135161 Juan 20 3083 24.5 23.5 24.0 0.8 3102 chr3R 15132059 intergenic CG42788 - chr3R 15133610 intergenic not near genes chr3R 15135161 3` UTR CG6912 - chr3R_20_15130001 chr3R_15130001 RAL-304_100b 3315 chr3R 15156190 15156244 chr3R 15156362 15156416 19 169 6.0 0.5 3.2 4.5 226 chr3R 15156190 intron Gyc88E + chr3R 15156303 intron Gyc88E + chr3R 15156416 intron Gyc88E + chr3R_19_15155001 chr3R_15155001 RAL-304_100b 3316 chr3R 15160540 15160549 chr3R 15160663 15160672 6 123 29.0 11.0 20.0 0.3 132 chr3R 15160540 intron Gyc88E + chr3R 15160606 intron Gyc88E + chr3R 15160672 intron Gyc88E + chr3R_6_15160001 chr3R_15160001 RAL-304_100b 3317 chr3R 15160550 15160594 chr3R 15160662 15160717 27 121 12.0 10.0 11.0 2.2 167 chr3R 15160550 intron Gyc88E + chr3R 15160634 intron Gyc88E + chr3R 15160717 intron Gyc88E + chr3R_27_15160001 chr3R_15160001 RAL-304_100b 3318 chr3R 15162527 15162533 chr3R 15167319 15167320 F-element 4 4791 25.5 19.0 22.2 0.2 4793 chr3R 15162527 intron Gyc88E + chr3R 15164924 intron Gyc88E + chr3R 15167320 intron Gyc88E + chr3R_4_15160001 chr3R_15160001 RAL-304_100b 3319 chr3R 15162534 15162573 chr3R 15167316 15167364 F-element 20 4789 9.5 18.0 13.8 1.4 4830 chr3R 15162534 intron Gyc88E + chr3R 15164949 intron Gyc88E + chr3R 15167364 intron Gyc88E + chr3R_20_15160001 chr3R_15160001 RAL-304_100b 3320 chr3R 15169332 15169342 chr3R 15169497 15169506 8 164 68.5 56.0 62.2 0.1 174 chr3R 15169332 intron Gyc88E + chr3R 15169419 intron Gyc88E + chr3R 15169506 intron Gyc88E + chr3R_8_15165001 chr3R_15165001 RAL-304_100b 3321 chr3R 15169331 15169365 chr3R 15169509 15169527 4 169 71.5 53.0 62.2 0.1 196 chr3R 15169331 intron Gyc88E + chr3R 15169429 intron Gyc88E + chr3R 15169527 intron Gyc88E + chr3R_4_15165001 chr3R_15165001 RAL-304_100b 3322 chr3R 15180879 15180904 chr3R 15180990 15181000 13 108 16.0 0.5 8.2 1.4 121 chr3R 15180879 intron Gyc88E + chr3R 15180940 intron Gyc88E + chr3R 15181000 intron Gyc88E + chr3R_13_15180001 chr3R_15180001 RAL-304_100b 3323 chr3R 15184516 15184533 chr3R 15184622 15184640 12 105 41.0 18.0 29.5 0.4 124 chr3R 15184516 intron Gyc88E + chr3R 15184578 intron Gyc88E + chr3R 15184640 intron Gyc88E + chr3R_12_15180001 chr3R_15180001 RAL-304_100b 3324 chr3R 15184542 15184570 chr3R 15184632 15184651 34 101 13.0 25.0 19.0 1.7 109 chr3R 15184542 intron Gyc88E + chr3R 15184596 intron Gyc88E + chr3R 15184651 intron Gyc88E + chr3R_34_15180001 chr3R_15180001 RAL-304_100b 3325 chr3R 15286987 15286989 chr3R 21907534 21907534 17 6620547 85.5 76.0 80.8 0.2 6620547 chr3R 15286987 intron Tm1 + chr3R 18597260 intron,exon qin +,CG14304 - chr3R 21907534 intergenic CG6678 + chr3R_17_18595001 chr3R_18595001 RAL-304_100b 3326 chr3R 15373632 15373646 chr3R 15373745 15373759 7 112 9.0 6.0 7.5 0.8 127 chr3R 15373632 3` UTR Ccm3 + chr3R 15373696 3` UTR Ccm3 + chr3R 15373759 3` UTR Ccm3 + chr3R_7_15370001 chr3R_15370001 RAL-304_100b 3327 chr3R 15406121 15406129 chr3R 15406227 15406235 6 104 20.0 4.0 12.0 0.5 114 chr3R 15406121 intron CG6125 - chr3R 15406178 intron CG6125 - chr3R 15406235 intron CG6125 - chr3R_6_15405001 chr3R_15405001 RAL-304_100b 3328 chr3R 15406130 15406170 chr3R 15406226 15406276 25 104 7.5 3.5 5.5 3.8 146 chr3R 15406130 intron CG6125 - chr3R 15406203 intron CG6125 - chr3R 15406276 intron CG6125 - chr3R_25_15405001 chr3R_15405001 RAL-304_100b 3329 chr3R 15517578 15517582 chr3R 15517686 15517690 4 108 39.5 8.5 24.0 0.2 112 chr3R 15517578 intergenic not near genes chr3R 15517634 intergenic not near genes chr3R 15517690 intergenic not near genes chr3R_4_15515001 chr3R_15515001 RAL-304_100b 3330 chr3R 15517583 15517629 chr3R 15517684 15517737 41 102 16.0 8.5 12.2 3.1 154 chr3R 15517583 intergenic not near genes chr3R 15517660 intergenic not near genes chr3R 15517737 intergenic not near genes chr3R_41_15515001 chr3R_15515001 RAL-304_100b 3331 chr3R 15594661 15594664 chr3R 15594752 15594772 8 104 0.0 23.0 11.5 0.6 111 chr3R 15594661 intergenic not near genes chr3R 15594716 intergenic not near genes chr3R 15594772 intergenic not near genes chr3R_8_15590001 chr3R_15590001 RAL-304_100b 3332 chr3R 15594665 15594676 chr3R 15594741 15594784 14 103 0.0 15.0 7.5 1.6 119 chr3R 15594665 intergenic not near genes chr3R 15594724 intergenic not near genes chr3R 15594784 intergenic not near genes chr3R_14_15590001 chr3R_15590001 RAL-304_100b 3333 chr3R 15601145 15601173 chr3R 15608692 15608716 412 21 7546 32.0 16.5 24.2 0.8 7571 chr3R 15601145 intergenic not near genes chr3R 15604930 intergenic not near genes chr3R 15608716 intergenic not near genes chr3R_21_15600001 chr3R_15600001 RAL-304_100b 3334 chr3R 15601175 15601195 chr3R 15608687 15608742 412 20 7541 17.0 15.0 16.0 1.2 7567 chr3R 15601175 intergenic not near genes chr3R 15604958 intergenic not near genes chr3R 15608742 intergenic not near genes chr3R_20_15600001 chr3R_15600001 RAL-304_100b 3335 chr3R 15618726 15618763 chr3R 15626225 15626262 blood 12 7494 4.5 16.5 10.5 1.0 7536 chr3R 15618726 intergenic not near genes chr3R 15622494 intergenic not near genes chr3R 15626262 intergenic not near genes chr3R_12_15620001 chr3R_15620001 RAL-304_100b 3336 chr3R 15646750 15646780 chr3R 15646872 15646902 23 120 16.0 17.5 16.8 1.3 152 chr3R 15646750 intergenic not near genes chr3R 15646826 intergenic not near genes chr3R 15646902 intergenic not near genes chr3R_23_15645001 chr3R_15645001 RAL-304_100b 3337 chr3R 15662141 15662170 chr3R 15662259 15662288 27 116 36.0 14.5 25.2 1.0 147 chr3R 15662141 intergenic not near genes chr3R 15662214 intergenic not near genes chr3R 15662288 intergenic not near genes chr3R_27_15660001 chr3R_15660001 RAL-304_100b 3338 chr3R 15662171 15662198 chr3R 15662258 15662291 34 108 15.5 14.0 14.8 2.2 120 chr3R 15662171 intergenic not near genes chr3R 15662231 intergenic not near genes chr3R 15662291 intergenic not near genes chr3R_34_15660001 chr3R_15660001 RAL-304_100b 3339 chr3R 15691155 15691326 chr3R 15691285 15691438 48 119 0.0 0.0 0.0 48.0 283 chr3R 15691155 intergenic not near genes chr3R 15691296 intergenic not near genes chr3R 15691438 intergenic not near genes chr3R_48_15690001 chr3R_15690001 RAL-304_100b 3340 chr3R 15734145 15734195 chr3R 15734261 15734296 33 110 24.5 7.5 16.0 1.9 151 chr3R 15734145 intergenic not near genes chr3R 15734220 intergenic not near genes chr3R 15734296 intergenic not near genes chr3R_33_15730001 chr3R_15730001 RAL-304_100b 3341 chr3R 15735218 15735233 chr3R 15739963 15739978 F-element 6 4745 10.0 10.0 10.0 0.5 4760 chr3R 15735218 intergenic not near genes chr3R 15737598 intergenic not near genes chr3R 15739978 intergenic not near genes chr3R_6_15735001 chr3R_15735001 RAL-304_100b 3342 chr3R 15783709 15783763 chr3R 15784014 15784049 50 299 13.0 10.5 11.8 3.9 340 chr3R 15783709 intergenic not near genes chr3R 15783879 intergenic not near genes chr3R 15784049 intergenic not near genes chr3R_50_15780001 chr3R_15780001 RAL-304_100b 3343 chr3R 15808042 15808071 chr3R 15808162 15808191 41 117 29.0 18.0 23.5 1.7 149 chr3R 15808042 intron alpha-Man-IIb + chr3R 15808116 intron alpha-Man-IIb + chr3R 15808191 intron alpha-Man-IIb + chr3R_41_15805001 chr3R_15805001 RAL-304_100b 3344 chr3R 15808072 15808100 chr3R 15808161 15808219 24 110 9.0 18.0 13.5 1.7 147 chr3R 15808072 intron alpha-Man-IIb + chr3R 15808146 intron alpha-Man-IIb + chr3R 15808219 intron alpha-Man-IIb + chr3R_24_15805001 chr3R_15805001 RAL-304_100b 3345 chr3R 15878074 15878096 chr3R 15878187 15878204 20 111 16.5 18.0 17.2 1.1 130 chr3R 15878074 intergenic not near genes chr3R 15878139 intergenic not near genes chr3R 15878204 intergenic not near genes chr3R_20_15875001 chr3R_15875001 RAL-304_100b 3346 chr3R 15891650 15891686 chr3R 15892056 15892103 26 412 12.5 18.5 15.5 1.6 453 chr3R 15891650 intron CG14877 - chr3R 15891876 intron CG14877 - chr3R 15892103 intron CG14877 - chr3R_26_15890001 chr3R_15890001 RAL-304_100b 3347 chr3R 15892631 15892639 chr3R 15892737 15892745 6 106 44.0 11.0 27.5 0.2 114 chr3R 15892631 intron CG14877 - chr3R 15892688 intron CG14877 - chr3R 15892745 intron CG14877 - chr3R_6_15890001 chr3R_15890001 RAL-304_100b 3348 chr3R 15892640 15892686 chr3R 15892731 15892792 44 102 19.0 15.0 17.0 2.4 152 chr3R 15892640 intron CG14877 - chr3R 15892716 intron CG14877 - chr3R 15892792 intron CG14877 - chr3R_44_15890001 chr3R_15890001 RAL-304_100b 3349 chr3R 15985815 15985821 chr3R 15985963 15985984 8 152 41.0 19.0 30.0 0.3 169 chr3R 15985815 intergenic srp +,CR44133 + chr3R 15985900 intergenic srp +,CR44133 + chr3R 15985984 intergenic srp +,CR44133 + chr3R_8_15985001 chr3R_15985001 RAL-304_100b 3350 chr3R 15985822 15985860 chr3R 15985962 15985995 29 154 21.0 18.5 19.8 1.4 173 chr3R 15985822 intergenic srp +,CR44133 + chr3R 15985908 intergenic srp +,CR44133 + chr3R 15985995 intergenic srp +,CR44133 + chr3R_29_15985001 chr3R_15985001 RAL-304_100b 3351 chr3R 16023850 16023859 chr3R 16023952 16023961 7 102 27.0 28.5 27.8 0.2 111 chr3R 16023850 intergenic not near genes chr3R 16023906 intergenic not near genes chr3R 16023961 intergenic not near genes chr3R_7_16020001 chr3R_16020001 RAL-304_100b 3352 chr3R 16023860 16023864 chr3R 16023947 16023966 5 96 25.5 25.0 25.2 0.2 106 chr3R 16023860 intergenic not near genes chr3R 16023913 intergenic not near genes chr3R 16023966 intergenic not near genes chr3R_5_16020001 chr3R_16020001 RAL-304_100b 3353 chr3R 16023867 16023890 chr3R 16023943 16023992 26 98 9.5 22.0 15.8 1.5 125 chr3R 16023867 intergenic not near genes chr3R 16023930 intergenic not near genes chr3R 16023992 intergenic not near genes chr3R_26_16020001 chr3R_16020001 RAL-304_100b 3354 chr3R 16033401 16033430 chr3R 16033507 16033536 12 106 6.0 10.5 8.2 1.3 135 chr3R 16033401 intron pnr + chr3R 16033468 intron pnr + chr3R 16033536 intron pnr + chr3R_12_16030001 chr3R_16030001 RAL-304_100b 3355 chr3R 16225062 16225119 chr3R 16225172 16225229 48 109 9.0 8.5 8.8 4.9 167 chr3R 16225062 intergenic not near genes chr3R 16225146 intergenic not near genes chr3R 16225229 intergenic tara + chr3R_48_16225001 chr3R_16225001 RAL-304_100b 3356 chr3R 16246524 16246549 chr3R 16246625 16246630 14 98 1.5 25.0 13.2 1.0 106 chr3R 16246524 intron tara + chr3R 16246577 intron tara + chr3R 16246630 intron tara + chr3R_14_16245001 chr3R_16245001 RAL-304_100b 3357 chr3R 16246550 16246556 chr3R 16246614 16246642 7 92 2.5 20.0 11.2 0.6 92 chr3R 16246550 intron tara + chr3R 16246596 intron tara + chr3R 16246642 intron tara + chr3R_7_16245001 chr3R_16245001 RAL-304_100b 3358 chr3R 16253911 16253913 chr3R 17845266 17845276 4 1591362 82.5 16.5 49.5 0.1 1591365 chr3R 16253911 intron tara + chr3R 17049594 intergenic not near genes chr3R 17845276 intron tinc + chr3R_4_17045001 chr3R_17045001 RAL-304_100b 3359 chr3R 16333730 16333742 chr3R 16333843 16333855 11 112 27.5 12.0 19.8 0.5 125 chr3R 16333730 intron Sulf1 - chr3R 16333792 intron Sulf1 - chr3R 16333855 intron Sulf1 - chr3R_11_16330001 chr3R_16330001 RAL-304_100b 3360 chr3R 16333743 16333781 chr3R 16333841 16333868 33 107 10.5 11.0 10.8 2.8 125 chr3R 16333743 intron Sulf1 - chr3R 16333806 intron Sulf1 - chr3R 16333868 intron Sulf1 - chr3R_33_16330001 chr3R_16330001 RAL-304_100b 3361 chr3R 16406602 16406635 chr3R 16536815 16536816 5 130195 20.0 51.5 35.8 0.1 130214 chr3R 16406602 intergenic CR45630 + chr3R 16471709 intergenic CSN5 + chr3R 16536816 intron CG42342 + chr3R_5_16470001 chr3R_16470001 RAL-304_100b 3362 chr3R 16450210 16450266 chr3R 16450314 16450370 34 103 11.0 8.0 9.5 3.2 160 chr3R 16450210 intron Pak3 - chr3R 16450290 intron Pak3 - chr3R 16450370 intron Pak3 - chr3R_34_16450001 chr3R_16450001 RAL-304_100b 3363 chr3R 16472564 16472565 chr3R 16472665 16472666 4 101 53.0 31.0 42.0 0.1 102 chr3R 16472564 intergenic Gyc-89Da + chr3R 16472615 5` UTR Gyc-89Da + chr3R 16472666 5` UTR Gyc-89Da + chr3R_4_16470001 chr3R_16470001 RAL-304_100b 3364 chr3R 16472566 16472587 chr3R 16472661 16472678 21 98 35.0 28.5 31.8 0.6 112 chr3R 16472566 intergenic Gyc-89Da + chr3R 16472622 5` UTR Gyc-89Da + chr3R 16472678 5` UTR Gyc-89Da + chr3R_21_16470001 chr3R_16470001 RAL-304_100b 3365 chr3R 16472588 16472599 chr3R 16472654 16472670 11 84 29.0 28.5 28.8 0.4 82 chr3R 16472588 intergenic Gyc-89Da + chr3R 16472629 5` UTR Gyc-89Da + chr3R 16472670 5` UTR Gyc-89Da + chr3R_11_16470001 chr3R_16470001 RAL-304_100b 3366 chr3R 16508425 16508429 chr3R 16508552 16508556 5 127 21.0 19.5 20.2 0.2 131 chr3R 16508425 intron CG42342 + chr3R 16508490 intron CG42342 + chr3R 16508556 intron CG42342 + chr3R_5_16505001 chr3R_16505001 RAL-304_100b 3367 chr3R 16508431 16508460 chr3R 16508539 16508587 24 120 11.0 17.0 14.0 1.6 156 chr3R 16508431 intron CG42342 + chr3R 16508509 intron CG42342 + chr3R 16508587 intron CG42342 + chr3R_24_16505001 chr3R_16505001 RAL-304_100b 3368 chr3R 16582883 16582906 chr3R 16582987 16583008 28 102 47.5 36.5 42.0 0.7 125 chr3R 16582883 intron Scp2 - chr3R 16582946 intron Scp2 - chr3R 16583008 intron Scp2 - chr3R_28_16580001 chr3R_16580001 RAL-304_100b 3369 chr3R 16582907 16582919 chr3R 16582986 16583013 17 97 38.0 35.5 36.8 0.4 106 chr3R 16582907 intron Scp2 - chr3R 16582960 intron Scp2 - chr3R 16583013 intron Scp2 - chr3R_17_16580001 chr3R_16580001 RAL-304_100b 3370 chr3R 16594726 16594784 chr3R 16594829 16594850 47 96 15.5 7.5 11.5 3.8 124 chr3R 16594726 5` UTR CG14892 + chr3R 16594788 5` UTR CG14892 + chr3R 16594850 5` UTR CG14892 + chr3R_47_16590001 chr3R_16590001 RAL-304_100b 3371 chr3R 16633671 16633675 chr3R 16633796 16633800 7 124 39.5 43.0 41.2 0.2 129 chr3R 16633671 intron Fas1 + chr3R 16633736 intron Fas1 + chr3R 16633800 intron Fas1 + chr3R_7_16630001 chr3R_16630001 RAL-304_100b 3372 chr3R 16675289 16675343 chr3R 16675428 16675478 49 137 10.0 16.0 13.0 3.5 189 chr3R 16675289 intron Ubx - chr3R 16675384 intron Ubx - chr3R 16675478 intron Ubx - chr3R_49_16675001 chr3R_16675001 RAL-304_100b 3373 chr3R 16683449 16683501 chr3R 16683566 16683618 31 116 1.0 11.0 6.0 4.4 169 chr3R 16683449 intron Ubx - chr3R 16683534 intron Ubx - chr3R 16683618 intron Ubx - chr3R_31_16680001 chr3R_16680001 RAL-304_100b 3374 chr3R 16756293 16756354 chr3R 16762509 16762537 diver 53 6212 13.5 9.0 11.2 4.3 6244 chr3R 16756293 intron bxd - chr3R 16759415 intron bxd - chr3R 16762537 intron bxd - chr3R_53_16755001 chr3R_16755001 RAL-304_100b 3375 chr3R 16774179 16774184 chr3R 16774310 16774315 5 131 26.5 13.5 20.0 0.2 136 chr3R 16774179 intergenic not near genes chr3R 16774247 intergenic not near genes chr3R 16774315 intergenic not near genes chr3R_5_16770001 chr3R_16770001 RAL-304_100b 3376 chr3R 16774185 16774202 chr3R 16774308 16774333 15 130 20.0 13.0 16.5 0.9 148 chr3R 16774185 intergenic not near genes chr3R 16774259 intergenic not near genes chr3R 16774333 intergenic not near genes chr3R_15_16770001 chr3R_16770001 RAL-304_100b 3377 chr3R 16774203 16774230 chr3R 16774306 16774361 23 127 8.0 11.5 9.8 2.1 158 chr3R 16774203 intergenic not near genes chr3R 16774282 intergenic not near genes chr3R 16774361 intergenic not near genes chr3R_23_16770001 chr3R_16770001 RAL-304_100b 3378 chr3R 16781261 16781315 chr3R 16781443 16781498 49 178 9.5 14.0 11.8 3.8 237 chr3R 16781261 intergenic not near genes chr3R 16781380 intergenic not near genes chr3R 16781498 intergenic not near genes chr3R_49_16780001 chr3R_16780001 RAL-304_100b 3379 chr3R 16836936 16836988 chr3R 16837290 16837342 19 351 13.0 6.5 9.8 1.8 406 chr3R 16836936 intron iab-8 - chr3R 16837139 intron iab-8 - chr3R 16837342 intron iab-8 - chr3R_19_16835001 chr3R_16835001 RAL-304_100b 3380 chr3R 17101118 17101130 chr3R 17101223 17101235 17 104 14.5 0.0 7.2 2.1 117 chr3R 17101118 intron cher - chr3R 17101176 intron cher - chr3R 17101235 intron cher - chr3R_17_17100001 chr3R_17100001 RAL-304_100b 3381 chr3R 17121497 17121556 chr3R 17121717 17121776 42 219 8.0 6.0 7.0 5.2 279 chr3R 17121497 intron cher - chr3R 17121636 intron,exon cher -,CG42779 + chr3R 17121776 intron,exon cher -,CG42779 + chr3R_42_17120001 chr3R_17120001 RAL-304_100b 3382 chr3R 17184711 17184757 chr3R 17184812 17184858 32 100 6.5 13.5 10.0 2.9 147 chr3R 17184711 intron Mur89F - chr3R 17184784 intron Mur89F - chr3R 17184858 intron Mur89F - chr3R_32_17180001 chr3R_17180001 RAL-304_100b 3383 chr3R 17228871 17228919 chr3R 17228975 17229022 23 101 8.0 11.5 9.8 2.1 151 chr3R 17228871 intergenic not near genes chr3R 17228946 intergenic not near genes chr3R 17229022 intergenic not near genes chr3R_23_17225001 chr3R_17225001 RAL-304_100b 3384 chr3R 17268648 17268702 chr3R 17268795 17268849 40 144 11.5 12.0 11.8 3.1 201 chr3R 17268648 intergenic not near genes chr3R 17268748 intergenic not near genes chr3R 17268849 intergenic not near genes chr3R_40_17265001 chr3R_17265001 RAL-304_100b 3385 chr3R 17273957 17274002 chr3R 17274078 17274134 48 129 9.5 14.5 12.0 3.7 177 chr3R 17273957 intergenic not near genes chr3R 17274046 intergenic not near genes chr3R 17274134 intergenic not near genes chr3R_48_17270001 chr3R_17270001 RAL-304_100b 3386 chr3R 17294646 17294701 chr3R 17295099 17295118 BS 43 449 16.0 19.5 17.8 2.3 472 chr3R 17294646 intergenic not near genes chr3R 17294882 intergenic not near genes chr3R 17295118 intergenic not near genes chr3R_43_17290001 chr3R_17290001 RAL-304_100b 3387 chr3R 17346247 17346247 chr3R 21907534 21907536 7 4561288 74.0 76.0 75.0 0.1 4561289 chr3R 17346247 intron beat-IIa - chr3R 19626892 intron CG6231 - chr3R 21907536 intergenic CG6678 + chr3R_7_19625001 chr3R_19625001 RAL-304_100b 3388 chr3R 17346667 17346713 chr3R 17348255 17348297 F-element 27 1584 13.0 14.5 13.8 1.8 1630 chr3R 17346667 intron beat-IIa - chr3R 17347482 intron beat-IIa - chr3R 17348297 intron beat-IIa - chr3R_27_17345001 chr3R_17345001 RAL-304_100b 3389 chr3R 17354806 17354813 chr3R 17354963 17354970 9 156 14.5 13.0 13.8 0.6 164 chr3R 17354806 intron beat-IIa - chr3R 17354888 intron beat-IIa - chr3R 17354970 intron beat-IIa - chr3R_9_17350001 chr3R_17350001 RAL-304_100b 3390 chr3R 17371374 17371430 chr3R 17371476 17371512 36 93 13.0 12.0 12.5 2.7 138 chr3R 17371374 3` UTR CR44256 - chr3R 17371443 3` UTR CR44256 - chr3R 17371512 3` UTR CR44256 - chr3R_36_17370001 chr3R_17370001 RAL-304_100b 3391 chr3R 17461174 17461231 chr3R 17461281 17461338 36 105 8.0 7.0 7.5 4.2 164 chr3R 17461174 intergenic not near genes chr3R 17461256 intergenic not near genes chr3R 17461338 intergenic not near genes chr3R_36_17460001 chr3R_17460001 RAL-304_100b 3392 chr3R 17470453 17470504 chr3R 17470581 17470632 49 123 11.5 11.0 11.2 4.0 179 chr3R 17470453 intergenic not near genes chr3R 17470542 intergenic not near genes chr3R 17470632 intergenic not near genes chr3R_49_17470001 chr3R_17470001 RAL-304_100b 3393 chr3R 17497949 17497966 chr3R 17498059 17498077 18 111 25.0 11.0 18.0 0.9 128 chr3R 17497949 intron Dscam3 - chr3R 17498013 intron Dscam3 - chr3R 17498077 intron Dscam3 - chr3R_18_17495001 chr3R_17495001 RAL-304_100b 3394 chr3R 17497967 17497993 chr3R 17498058 17498104 18 109 16.5 10.5 13.5 1.2 137 chr3R 17497967 intron Dscam3 - chr3R 17498036 intron Dscam3 - chr3R 17498104 intron Dscam3 - chr3R_18_17495001 chr3R_17495001 RAL-304_100b 3395 chr3R 17506336 17506393 chr3R 17506439 17506494 12 102 5.0 5.0 5.0 2.0 158 chr3R 17506336 intergenic not near genes chr3R 17506415 intergenic not near genes chr3R 17506494 intergenic not near genes chr3R_12_17505001 chr3R_17505001 RAL-304_100b 3396 chr3R 17509231 17509250 chr3R 17516804 17516816 412 9 7571 22.0 45.5 33.8 0.3 7585 chr3R 17509231 intergenic not near genes chr3R 17513024 intergenic not near genes chr3R 17516816 intergenic not near genes chr3R_9_17510001 chr3R_17510001 RAL-304_100b 3397 chr3R 17521572 17521577 chr3R 17521717 17521762 19 167 7.0 21.5 14.2 1.2 190 chr3R 17521572 intergenic not near genes chr3R 17521667 intergenic not near genes chr3R 17521762 intergenic not near genes chr3R_19_17520001 chr3R_17520001 RAL-304_100b 3398 chr3R 17521578 17521590 chr3R 17521715 17521775 19 175 5.5 20.5 13.0 1.4 197 chr3R 17521578 intergenic not near genes chr3R 17521676 intergenic not near genes chr3R 17521775 intergenic not near genes chr3R_19_17520001 chr3R_17520001 RAL-304_100b 3399 chr3R 17522197 17522247 chr3R 17522305 17522305 11 108 10.5 0.0 5.2 1.8 108 chr3R 17522197 intergenic not near genes chr3R 17522251 intergenic not near genes chr3R 17522305 intergenic not near genes chr3R_11_17520001 chr3R_17520001 RAL-304_100b 3400 chr3R 17575306 17575309 chr3R 17582797 17582800 blood 4 7491 72.0 19.0 45.5 0.1 7494 chr3R 17575306 intergenic not near genes chr3R 17579053 intergenic not near genes chr3R 17582800 intergenic not near genes chr3R_4_17575001 chr3R_17575001 RAL-304_100b 3401 chr3R 17588397 17588454 chr3R 17588500 17588532 42 99 19.5 20.0 19.8 2.0 135 chr3R 17588397 intergenic not near genes chr3R 17588464 intergenic not near genes chr3R 17588532 intergenic not near genes chr3R_42_17585001 chr3R_17585001 RAL-304_100b 3402 chr3R 17591263 17591268 chr3R 17591724 17591729 F-element 6 460 45.5 18.5 32.0 0.2 466 chr3R 17591263 intergenic not near genes chr3R 17591496 intergenic not near genes chr3R 17591729 intergenic not near genes chr3R_6_17590001 chr3R_17590001 RAL-304_100b 3403 chr3R 17591269 17591282 chr3R 17591721 17591743 F-element 10 455 37.0 17.0 27.0 0.4 474 chr3R 17591269 intergenic not near genes chr3R 17591506 intergenic not near genes chr3R 17591743 intergenic not near genes chr3R_10_17590001 chr3R_17590001 RAL-304_100b 3404 chr3R 17591284 17591296 chr3R 17591720 17591757 F-element 13 450 30.0 16.5 23.2 0.5 473 chr3R 17591284 intergenic not near genes chr3R 17591520 intergenic not near genes chr3R 17591757 intergenic not near genes chr3R_13_17590001 chr3R_17590001 RAL-304_100b 3405 chr3R 17591297 17591322 chr3R 17591718 17591768 F-element 13 447 13.0 15.5 14.2 0.9 471 chr3R 17591297 intergenic not near genes chr3R 17591532 intergenic not near genes chr3R 17591768 intergenic not near genes chr3R_13_17590001 chr3R_17590001 RAL-304_100b 3406 chr3R 17593019 17593052 chr3R 17593181 17593214 12 160 16.0 6.0 11.0 1.0 195 chr3R 17593019 intergenic not near genes chr3R 17593116 intergenic not near genes chr3R 17593214 intergenic not near genes chr3R_12_17590001 chr3R_17590001 RAL-304_100b 3407 chr3R 17638326 17638339 chr3R 17638837 17638850 roo 11 511 0.0 11.5 5.8 1.6 524 chr3R 17638326 intron CG43175 + chr3R 17638588 intron CG43175 + chr3R 17638850 intron,intron CG43175 +,CR45222 + chr3R_11_17635001 chr3R_17635001 RAL-304_100b 3408 chr3R 17647223 17647274 chr3R 17647340 17647396 26 118 6.5 6.5 6.5 3.5 173 chr3R 17647223 intergenic CG14322 + chr3R 17647310 intergenic CG14322 + chr3R 17647396 intergenic CG14322 + chr3R_26_17645001 chr3R_17645001 RAL-304_100b 3409 chr3R 17723171 17723209 chr3R 17723343 17723381 18 171 13.5 9.5 11.5 1.4 210 chr3R 17723171 intergenic Pxt + chr3R 17723276 intergenic Pxt + chr3R 17723381 intergenic Pxt + chr3R_18_17720001 chr3R_17720001 RAL-304_100b 3410 chr3R 17725047 17725068 chr3R 17725166 17725187 15 119 18.0 0.0 9.0 1.5 140 chr3R 17725047 intergenic Atg8b - chr3R 17725117 intergenic Atg8b - chr3R 17725187 intergenic Atg8b - chr3R_15_17725001 chr3R_17725001 RAL-304_100b 3411 chr3R 17773367 17773392 chr3R 17773472 17773497 16 105 13.5 15.0 14.2 1.1 130 chr3R 17773367 intron CG43102 - chr3R 17773432 intron CG43102 - chr3R 17773497 exon CG43102 - chr3R_16_17770001 chr3R_17770001 RAL-304_100b 3412 chr3R 17811171 17811227 chr3R 17811276 17811304 18 98 8.5 0.0 4.2 3.5 133 chr3R 17811171 intergenic CG18012 -,tinc + chr3R 17811238 intergenic CG18012 -,tinc + chr3R 17811304 intergenic CG18012 -,tinc + chr3R_18_17810001 chr3R_17810001 RAL-304_100b 3413 chr3R 17823183 17823230 chr3R 17823293 17823309 16 106 10.0 7.0 8.5 1.7 126 chr3R 17823183 intron tinc + chr3R 17823246 intron tinc + chr3R 17823309 intron tinc + chr3R_16_17820001 chr3R_17820001 RAL-304_100b 3414 chr3R 17825891 17825932 chr3R 17825995 17826039 13 102 0.0 5.0 2.5 3.7 148 chr3R 17825891 intron tinc + chr3R 17825965 intron tinc + chr3R 17826039 intron tinc + chr3R_13_17825001 chr3R_17825001 RAL-304_100b 3415 chr3R 17845098 17845217 chr3R 17845207 17845319 21 91 0.5 0.5 0.5 14.0 221 chr3R 17845098 intron tinc + chr3R 17845208 intron tinc + chr3R 17845319 intron tinc + chr3R_21_17845001 chr3R_17845001 RAL-304_100b 3416 chr3R 17856017 17856046 chr3R 17856142 17856150 19 117 43.0 17.5 30.2 0.6 133 chr3R 17856017 intron tinc + chr3R 17856084 intron tinc + chr3R 17856150 intron tinc + chr3R_19_17855001 chr3R_17855001 RAL-304_100b 3417 chr3R 17925831 17925856 chr3R 17927318 17927343 hobo 25 1491 35.5 22.5 29.0 0.8 1512 chr3R 17925831 intron cpo + chr3R 17926587 intron cpo + chr3R 17927343 intron cpo + chr3R_25_17925001 chr3R_17925001 RAL-304_100b 3418 chr3R 17925857 17925876 chr3R 17927317 17927342 hobo 24 1481 30.5 22.0 26.2 0.9 1485 chr3R 17925857 intron cpo + chr3R 17926600 intron cpo + chr3R 17927342 intron cpo + chr3R_24_17925001 chr3R_17925001 RAL-304_100b 3419 chr3R 17955818 17955842 chr3R 17955888 17955890 6 87 13.0 0.0 6.5 0.8 72 chr3R 17955818 intron cpo + chr3R 17955854 intron cpo + chr3R 17955890 intron cpo + chr3R_6_17955001 chr3R_17955001 RAL-304_100b 3420 chr3R 17958047 17958053 chr3R 17958149 17958157 4 104 0.0 22.5 11.2 0.3 110 chr3R 17958047 intron cpo + chr3R 17958102 intron cpo + chr3R 17958157 intron cpo + chr3R_4_17955001 chr3R_17955001 RAL-304_100b 3421 chr3R 17983189 17983218 chr3R 17983290 17983319 11 100 2.0 7.5 4.8 1.9 130 chr3R 17983189 intron cpo + chr3R 17983254 intron cpo + chr3R 17983319 intron cpo + chr3R_11_17980001 chr3R_17980001 RAL-304_100b 3422 chr3R 17983225 17983246 chr3R 17983300 17983312 9 85 1.5 7.0 4.2 1.7 87 chr3R 17983225 intron cpo + chr3R 17983268 intron cpo + chr3R 17983312 intron cpo + chr3R_9_17980001 chr3R_17980001 RAL-304_100b 3423 chr3R 18032754 18032807 chr3R 18040454 18040507 opus 10 7700 1.0 12.0 6.5 1.3 7753 chr3R 18032754 intergenic not near genes chr3R 18036630 intergenic not near genes chr3R 18040507 intergenic not near genes chr3R_10_18035001 chr3R_18035001 RAL-304_100b 3424 chr3R 18041740 18041762 chr3R 18041842 18041862 13 102 4.0 1.0 2.5 3.7 122 chr3R 18041740 intergenic not near genes chr3R 18041801 intergenic not near genes chr3R 18041862 intergenic not near genes chr3R_13_18040001 chr3R_18040001 RAL-304_100b 3425 chr3R 18061419 18061459 chr3R 18061536 18061576 24 115 10.0 0.0 5.0 4.0 157 chr3R 18061419 intergenic not near genes chr3R 18061498 intergenic not near genes chr3R 18061576 intergenic not near genes chr3R_24_18060001 chr3R_18060001 RAL-304_100b 3426 chr3R 18065626 18065665 chr3R 18065745 18065790 6 122 4.0 9.5 6.8 0.8 164 chr3R 18065626 intergenic not near genes chr3R 18065708 intergenic not near genes chr3R 18065790 intergenic not near genes chr3R_6_18065001 chr3R_18065001 RAL-304_100b 3427 chr3R 18101349 18101366 chr3R 18101450 18101467 12 99 41.5 25.0 33.2 0.4 118 chr3R 18101349 intron sr + chr3R 18101408 intron sr + chr3R 18101467 intron sr + chr3R_12_18100001 chr3R_18100001 RAL-304_100b 3428 chr3R 18101368 18101392 chr3R 18101449 18101493 35 97 20.5 23.5 22.0 1.5 125 chr3R 18101368 intron sr + chr3R 18101430 intron sr + chr3R 18101493 intron sr + chr3R_35_18100001 chr3R_18100001 RAL-304_100b 3429 chr3R 18107120 18107127 chr3R 18107228 18107235 5 108 0.0 20.0 10.0 0.5 115 chr3R 18107120 intron sr + chr3R 18107178 intron sr + chr3R 18107235 intron sr + chr3R_5_18105001 chr3R_18105001 RAL-304_100b 3430 chr3R 18107128 18107139 chr3R 18107211 18107247 7 104 0.0 14.0 7.0 0.9 119 chr3R 18107128 intron sr + chr3R 18107188 intron sr + chr3R 18107247 intron sr + chr3R_7_18105001 chr3R_18105001 RAL-304_100b 3431 chr3R 18122876 18122917 chr3R 18122978 18123019 8 100 6.5 11.5 9.0 0.8 143 chr3R 18122876 intron sr + chr3R 18122948 intron sr + chr3R 18123019 intron sr + chr3R_8_18120001 chr3R_18120001 RAL-304_100b 3432 chr3R 18157573 18157621 chr3R 18157705 18157754 14 131 0.0 14.5 7.2 1.7 181 chr3R 18157573 intergenic CR45103 + chr3R 18157664 intergenic CR45103 + chr3R 18157754 5` UTR CR45103 + chr3R_14_18155001 chr3R_18155001 RAL-304_100b 3433 chr3R 18174708 18174728 chr3R 18174792 18174802 21 90 2.0 11.0 6.5 2.8 94 chr3R 18174708 intron PP2A-B' + chr3R 18174755 intron PP2A-B' + chr3R 18174802 intron PP2A-B' + chr3R_21_18170001 chr3R_18170001 RAL-304_100b 3434 chr3R 18204328 18204338 chr3R 18204426 18204441 9 102 32.0 15.0 23.5 0.4 113 chr3R 18204328 intron CG7985 + chr3R 18204384 intron CG7985 + chr3R 18204441 intron CG7985 + chr3R_9_18200001 chr3R_18200001 RAL-304_100b 3435 chr3R 18215735 18215771 chr3R 18215929 18215965 24 191 1.5 17.5 9.5 2.3 230 chr3R 18215735 intergenic CG14314 + chr3R 18215850 intergenic CG14314 + chr3R 18215965 intergenic CG14314 + chr3R_24_18215001 chr3R_18215001 RAL-304_100b 3436 chr3R 18231700 18231761 chr3R 18232078 18232139 45 376 12.0 12.0 12.0 3.5 439 chr3R 18231700 intergenic not near genes chr3R 18231920 intergenic not near genes chr3R 18232139 intergenic not near genes chr3R_45_18230001 chr3R_18230001 RAL-304_100b 3437 chr3R 18215737 18215750 chr3R 18295874 18295882 5 80133 2.0 65.0 33.5 0.1 80145 chr3R 18215737 intergenic CG14314 + chr3R 18255810 5` UTR,exon Tgs1 +,moi + chr3R 18295882 intron l(3)05822 - chr3R_5_18255001 chr3R_18255001 RAL-304_100b 3438 chr3R 18302965 18302973 chr3R 18303095 18303103 6 130 23.0 0.0 11.5 0.5 138 chr3R 18302965 intergenic CG7126 -,PKD - chr3R 18303034 intergenic CG7126 -,PKD - chr3R 18303103 intergenic PKD -,CG7126 - chr3R_6_18300001 chr3R_18300001 RAL-304_100b 3439 chr3R 18302974 18302993 chr3R 18303094 18303123 10 126 12.0 0.0 6.0 1.4 149 chr3R 18302974 intergenic CG7126 -,PKD - chr3R 18303048 intergenic CG7126 -,PKD - chr3R 18303123 intergenic PKD -,CG7126 - chr3R_10_18300001 chr3R_18300001 RAL-304_100b 3440 chr3R 18316822 18316832 chr3R 18316922 18316937 4 105 18.0 9.0 13.5 0.3 115 chr3R 18316822 3` UTR CG31235 - chr3R 18316880 3` UTR CG31235 - chr3R 18316937 3` UTR CG31235 - chr3R_4_18315001 chr3R_18315001 RAL-304_100b 3441 chr3R 18316838 18316868 chr3R 18316920 18316923 12 92 6.5 7.5 7.0 1.5 85 chr3R 18316838 3` UTR CG31235 - chr3R 18316880 3` UTR CG31235 - chr3R 18316923 3` UTR CG31235 - chr3R_12_18315001 chr3R_18315001 RAL-304_100b 3442 chr3R 18413449 18413486 chr3R 18413556 18413593 7 107 5.5 5.0 5.2 1.1 144 chr3R 18413449 intergenic not near genes chr3R 18413521 intergenic not near genes chr3R 18413593 intergenic not near genes chr3R_7_18410001 chr3R_18410001 RAL-304_100b 3443 chr3R 18433997 18434051 chr3R 18434101 18434155 16 101 10.0 0.0 5.0 2.7 158 chr3R 18433997 intron fru - chr3R 18434076 intron fru - chr3R 18434155 intron fru - chr3R_16_18430001 chr3R_18430001 RAL-304_100b 3444 chr3R 18464286 18464341 chr3R 18464449 18464503 17 163 0.5 13.0 6.8 2.2 217 chr3R 18464286 intron fru - chr3R 18464394 intron fru - chr3R 18464503 intron fru - chr3R_17_18460001 chr3R_18460001 RAL-304_100b 3445 chr3R 18472259 18472297 chr3R 18472385 18472423 25 124 10.0 3.5 6.8 3.2 164 chr3R 18472259 intron fru - chr3R 18472341 intron fru - chr3R 18472423 intron fru - chr3R_25_18470001 chr3R_18470001 RAL-304_100b 3446 chr3R 18473233 18473247 chr3R 18473345 18473354 4 110 0.0 0.5 0.2 3.3 121 chr3R 18473233 intron fru - chr3R 18473294 intron fru - chr3R 18473354 intron fru - chr3R_4_18470001 chr3R_18470001 RAL-304_100b 3447 chr3R 18500712 18500739 chr3R 18500858 18500872 19 144 5.5 28.0 16.8 1.1 160 chr3R 18500712 intron fru - chr3R 18500792 intron fru - chr3R 18500872 intron fru - chr3R_19_18500001 chr3R_18500001 RAL-304_100b 3448 chr3R 18501572 18501592 chr3R 18501678 18501698 14 105 27.5 19.0 23.2 0.6 126 chr3R 18501572 intron fru - chr3R 18501635 intron fru - chr3R 18501698 intron fru - chr3R_14_18500001 chr3R_18500001 RAL-304_100b 3449 chr3R 18501594 18501628 chr3R 18501677 18501699 27 99 14.0 19.0 16.5 1.5 105 chr3R 18501594 intron fru - chr3R 18501646 intron fru - chr3R 18501699 intron fru - chr3R_27_18500001 chr3R_18500001 RAL-304_100b 3450 chr3R 18559409 18559414 chr3R 18559506 18559516 4 101 4.0 0.0 2.0 1.3 107 chr3R 18559409 intergenic CG7691 + chr3R 18559462 intergenic CG7691 + chr3R 18559516 intergenic CG7691 + chr3R_4_18555001 chr3R_18555001 RAL-304_100b 3451 chr3R 18606501 18606516 chr3R 18610748 18610763 F-element 13 4247 10.0 5.0 7.5 1.5 4262 chr3R 18606501 intron,intron qin +,CG14304 - chr3R 18608632 intron,intron qin +,CG14304 - chr3R 18610763 intron,intron qin +,CG14304 - chr3R_13_18605001 chr3R_18605001 RAL-304_100b 3452 chr3R 18606517 18606532 chr3R 18610746 18610779 F-element 11 4243 8.5 5.0 6.8 1.4 4262 chr3R 18606517 intron,intron qin +,CG14304 - chr3R 18608648 intron,intron qin +,CG14304 - chr3R 18610779 intron,intron qin +,CG14304 - chr3R_11_18605001 chr3R_18605001 RAL-304_100b 3453 chr3R 18615351 18615405 chr3R 18615463 18615514 19 113 5.0 6.0 5.5 2.9 163 chr3R 18615351 intron,intron qin +,CG14304 - chr3R 18615432 intron,intron qin +,CG14304 - chr3R 18615514 intron,intron qin +,CG14304 - chr3R_19_18615001 chr3R_18615001 RAL-304_100b 3454 chr3R 18617686 18617739 chr3R 18617791 18617843 15 105 5.5 4.0 4.8 2.6 157 chr3R 18617686 intron,intron qin +,CG14304 - chr3R 18617764 intron,intron qin +,CG14304 - chr3R 18617843 intron,intron qin +,CG14304 - chr3R_15_18615001 chr3R_18615001 RAL-304_100b 3455 chr3R 18618241 18618296 chr3R 18618351 18618406 25 106 6.0 8.5 7.2 3.0 165 chr3R 18618241 intron,intron qin +,CG14304 - chr3R 18618324 intron,intron qin +,CG14304 - chr3R 18618406 intron,intron qin +,CG14304 - chr3R_25_18615001 chr3R_18615001 RAL-304_100b 3456 chr3R 18670359 18670414 chr3R 18670477 18670532 43 113 12.5 10.0 11.2 3.5 173 chr3R 18670359 intron CG7702 + chr3R 18670446 intron CG7702 + chr3R 18670532 intron CG7702 + chr3R_43_18670001 chr3R_18670001 RAL-304_100b 3457 chr3R 18720283 18720295 chr3R 18720404 18720416 12 120 45.5 14.0 29.8 0.4 133 chr3R 18720283 intron Cha + chr3R 18720350 intron Cha + chr3R 18720416 intron Cha + chr3R_12_18720001 chr3R_18720001 RAL-304_100b 3458 chr3R 18720299 18720341 chr3R 18720403 18720462 49 115 15.0 14.0 14.5 3.2 163 chr3R 18720299 intron Cha + chr3R 18720380 intron Cha + chr3R 18720462 intron Cha + chr3R_49_18720001 chr3R_18720001 RAL-304_100b 3459 chr3R 18766752 18766805 chr3R 18766855 18766908 50 98 17.0 13.0 15.0 3.1 156 chr3R 18766752 intron CG7720 - chr3R 18766830 intron CG7720 - chr3R 18766908 intron CG7720 - chr3R_50_18765001 chr3R_18765001 RAL-304_100b 3460 chr3R 18781668 18781725 chr3R 18781769 18781801 28 91 20.0 17.0 18.5 1.4 133 chr3R 18781668 intron CG7720 - chr3R 18781734 intron CG7720 - chr3R 18781801 intron CG7720 - chr3R_28_18780001 chr3R_18780001 RAL-304_100b 3461 chr3R 18785848 18785863 chr3R 18785950 18785965 16 102 33.5 8.0 20.8 0.7 117 chr3R 18785848 intron CG7720 - chr3R 18785906 intron CG7720 - chr3R 18785965 intron CG7720 - chr3R_16_18785001 chr3R_18785001 RAL-304_100b 3462 chr3R 18785864 18785900 chr3R 18785943 18786002 26 98 16.5 12.5 14.5 1.7 138 chr3R 18785864 intron CG7720 - chr3R 18785933 intron CG7720 - chr3R 18786002 intron CG7720 - chr3R_26_18785001 chr3R_18785001 RAL-304_100b 3463 chr3R 18791470 18791475 chr3R 18791574 18791574 5 103 39.5 10.5 25.0 0.2 104 chr3R 18791470 intron CG7720 - chr3R 18791522 intron CG7720 - chr3R 18791574 intron CG7720 - chr3R_5_18790001 chr3R_18790001 RAL-304_100b 3464 chr3R 18791479 18791516 chr3R 18791573 18791620 20 95 15.5 11.0 13.2 1.4 141 chr3R 18791479 intron CG7720 - chr3R 18791550 intron CG7720 - chr3R 18791620 intron CG7720 - chr3R_20_18790001 chr3R_18790001 RAL-304_100b 3465 chr3R 18792783 18792833 chr3R 18792891 18792941 18 106 7.0 0.0 3.5 4.0 158 chr3R 18792783 intron CG7720 - chr3R 18792862 intron CG7720 - chr3R 18792941 intron CG7720 - chr3R_18_18790001 chr3R_18790001 RAL-304_100b 3466 chr3R 18807500 18807504 chr3R 18807597 18807611 4 104 0.5 41.5 21.0 0.2 111 chr3R 18807500 intron CG18208 - chr3R 18807556 intron CG18208 - chr3R 18807611 intron CG18208 - chr3R_4_18805001 chr3R_18805001 RAL-304_100b 3467 chr3R 18812063 18812068 chr3R 18812157 18812171 9 101 45.5 19.0 32.2 0.3 108 chr3R 18812063 intron CG18208 - chr3R 18812117 intron CG18208 - chr3R 18812171 intron CG18208 - chr3R_9_18810001 chr3R_18810001 RAL-304_100b 3468 chr3R 18812070 18812107 chr3R 18812155 18812210 34 101 20.0 19.0 19.5 1.7 140 chr3R 18812070 intron CG18208 - chr3R 18812140 intron CG18208 - chr3R 18812210 intron CG18208 - chr3R_34_18810001 chr3R_18810001 RAL-304_100b 3469 chr3R 18830037 18830090 chr3R 18830200 18830253 37 160 10.0 9.0 9.5 3.5 216 chr3R 18830037 intron CG18208 - chr3R 18830145 intron CG18208 - chr3R 18830253 intron CG18208 - chr3R_37_18830001 chr3R_18830001 RAL-304_100b 3470 chr3R 18877985 18878040 chr3R 18878137 18878191 43 149 13.0 13.0 13.0 3.1 206 chr3R 18877985 intergenic not near genes chr3R 18878088 intergenic not near genes chr3R 18878191 intergenic not near genes chr3R_43_18875001 chr3R_18875001 RAL-304_100b 3471 chr3R 18887577 18887584 chr3R 18887683 18887690 7 106 42.5 36.0 39.2 0.2 113 chr3R 18887577 intergenic not near genes chr3R 18887634 intergenic not near genes chr3R 18887690 intergenic not near genes chr3R_7_18885001 chr3R_18885001 RAL-304_100b 3472 chr3R 18887585 18887599 chr3R 18887682 18887705 15 103 33.5 34.5 34.0 0.4 120 chr3R 18887585 intergenic not near genes chr3R 18887645 intergenic not near genes chr3R 18887705 intergenic not near genes chr3R_15_18885001 chr3R_18885001 RAL-304_100b 3473 chr3R 18932572 18932602 chr3R 18932952 18932977 18 375 10.5 23.5 17.0 1.0 405 chr3R 18932572 intron CG42613 + chr3R 18932774 intron CG42613 + chr3R 18932977 intron CG42613 + chr3R_18_18930001 chr3R_18930001 RAL-304_100b 3474 chr3R 18933781 18933810 chr3R 18933882 18933905 24 97 38.0 37.0 37.5 0.6 124 chr3R 18933781 intron CG42613 + chr3R 18933843 intron CG42613 + chr3R 18933905 intron CG42613 + chr3R_24_18930001 chr3R_18930001 RAL-304_100b 3475 chr3R 846553 846553 chr3R 19060084 19060086 5 18213532 45.0 29.0 37.0 0.1 18213533 chr3R 846553 intron CG42621 + chr3R 9953320 intron Glut4EF + chr3R 19060086 intron cdi - chr3R_5_9950001 chr3R_9950001 RAL-304_100b 3476 chr3R 19106811 19106818 chr3R 19106911 19106912 4 99 31.0 2.0 16.5 0.2 101 chr3R 19106811 intron CG6040 + chr3R 19106862 intron CG6040 + chr3R 19106912 intron CG6040 + chr3R_4_19105001 chr3R_19105001 RAL-304_100b 3477 chr3R 19106820 19106840 chr3R 19106910 19106915 7 84 15.0 2.0 8.5 0.7 95 chr3R 19106820 intron CG6040 + chr3R 19106868 intron CG6040 + chr3R 19106915 intron CG6040 + chr3R_7_19105001 chr3R_19105001 RAL-304_100b 3478 chr3R 19109199 19109208 chr3R 19109336 19109345 11 137 38.0 12.0 25.0 0.4 146 chr3R 19109199 intron CG6040 + chr3R 19109272 intron CG6040 + chr3R 19109345 intron CG6040 + chr3R_11_19105001 chr3R_19105001 RAL-304_100b 3479 chr3R 19109211 19109252 chr3R 19109333 19109389 43 129 15.5 11.5 13.5 3.0 178 chr3R 19109211 intron CG6040 + chr3R 19109300 intron CG6040 + chr3R 19109389 intron CG6040 + chr3R_43_19105001 chr3R_19105001 RAL-304_100b 3480 chr3R 19193002 19193014 chr3R 19197289 19197331 F-element 12 4318 5.5 19.5 12.5 0.9 4329 chr3R 19193002 intron CG31475 + chr3R 19195166 intron CG31475 + chr3R 19197331 intron CG31475 + chr3R_12_19195001 chr3R_19195001 RAL-304_100b 3481 chr3R 19271414 19271445 chr3R 19271506 19271555 33 91 14.5 17.0 15.8 2.0 141 chr3R 19271414 intergenic not near genes chr3R 19271484 intergenic not near genes chr3R 19271555 intergenic not near genes chr3R_33_19270001 chr3R_19270001 RAL-304_100b 3482 chr3R 19276907 19276920 chr3R 19277012 19277025 10 105 22.0 3.0 12.5 0.7 118 chr3R 19276907 intergenic not near genes chr3R 19276966 intergenic not near genes chr3R 19277025 intergenic not near genes chr3R_10_19275001 chr3R_19275001 RAL-304_100b 3483 chr3R 19276921 19276942 chr3R 19277010 19277047 14 103 10.5 3.0 6.8 1.8 126 chr3R 19276921 intergenic not near genes chr3R 19276984 intergenic not near genes chr3R 19277047 intergenic not near genes chr3R_14_19275001 chr3R_19275001 RAL-304_100b 3484 chr3R 19290907 19290913 chr3R 19291010 19291021 4 107 9.5 19.5 14.5 0.3 114 chr3R 19290907 intergenic not near genes chr3R 19290964 intergenic not near genes chr3R 19291021 intergenic not near genes chr3R_4_19290001 chr3R_19290001 RAL-304_100b 3485 chr3R 19337193 19337210 chr3R 19337295 19337312 6 101 36.5 61.0 48.8 0.1 119 chr3R 19337193 intergenic not near genes chr3R 19337252 intergenic not near genes chr3R 19337312 intergenic not near genes chr3R_6_19335001 chr3R_19335001 RAL-304_100b 3486 chr3R 19340377 19340382 chr3R 19340479 19340484 5 102 27.0 11.5 19.2 0.2 107 chr3R 19340377 intergenic not near genes chr3R 19340430 intergenic not near genes chr3R 19340484 intergenic not near genes chr3R_5_19340001 chr3R_19340001 RAL-304_100b 3487 chr3R 19340384 19340391 chr3R 19340478 19340493 7 101 24.5 11.0 17.8 0.4 109 chr3R 19340384 intergenic not near genes chr3R 19340438 intergenic not near genes chr3R 19340493 intergenic not near genes chr3R_7_19340001 chr3R_19340001 RAL-304_100b 3488 chr3R 19340392 19340430 chr3R 19340475 19340532 28 98 14.0 9.5 11.8 2.2 140 chr3R 19340392 intergenic not near genes chr3R 19340462 intergenic not near genes chr3R 19340532 intergenic not near genes chr3R_28_19340001 chr3R_19340001 RAL-304_100b 3489 chr3R 19369483 19369517 chr3R 19369595 19369629 25 110 4.5 10.0 7.2 3.0 146 chr3R 19369483 intron Ino80 - chr3R 19369556 intron Ino80 - chr3R 19369629 intron Ino80 - chr3R_25_19365001 chr3R_19365001 RAL-304_100b 3490 chr3R 19418389 19418433 chr3R 19418506 19418550 21 117 19.0 1.5 10.2 1.9 161 chr3R 19418389 intron CG31221 + chr3R 19418470 intron CG31221 + chr3R 19418550 intron CG31221 + chr3R_21_19415001 chr3R_19415001 RAL-304_100b 3491 chr3R 19429711 19429765 chr3R 19429825 19429879 20 112 6.0 5.5 5.8 2.9 168 chr3R 19429711 intron CG31221 + chr3R 19429795 intron CG31221 + chr3R 19429879 intron CG31221 + chr3R_20_19425001 chr3R_19425001 RAL-304_100b 3492 chr3R 19494388 19494412 chr3R 19494493 19494496 9 103 12.5 8.0 10.2 0.8 108 chr3R 19494388 intron Dys + chr3R 19494442 intron Dys + chr3R 19494496 intron Dys + chr3R_9_19490001 chr3R_19490001 RAL-304_100b 3493 chr3R 19505913 19505926 chr3R 19506037 19506050 13 123 34.5 16.0 25.2 0.5 137 chr3R 19505913 exon Dys + chr3R 19505982 intron Dys + chr3R 19506050 intron Dys + chr3R_13_19505001 chr3R_19505001 RAL-304_100b 3494 chr3R 19505927 19505968 chr3R 19506036 19506092 46 120 11.5 16.0 13.8 3.1 165 chr3R 19505927 exon Dys + chr3R 19506010 intron Dys + chr3R 19506092 intron Dys + chr3R_46_19505001 chr3R_19505001 RAL-304_100b 3495 chr3R 19590622 19590683 chr3R 19590739 19590778 38 113 0.0 22.5 11.2 3.1 156 chr3R 19590622 exon Dys + chr3R 19590700 intron Dys + chr3R 19590778 exon Dys + chr3R_38_19590001 chr3R_19590001 RAL-304_100b 3496 chr3R 19591512 19591551 chr3R 19591618 19591642 7 104 4.0 14.0 9.0 0.7 130 chr3R 19591512 intron Dys + chr3R 19591577 intron Dys + chr3R 19591642 intron Dys + chr3R_7_19590001 chr3R_19590001 RAL-304_100b 3497 chr3R 19593484 19593496 chr3R 19593594 19593606 12 109 23.0 13.5 18.2 0.6 122 chr3R 19593484 intron Dys + chr3R 19593545 intron Dys + chr3R 19593606 intron Dys + chr3R_12_19590001 chr3R_19590001 RAL-304_100b 3498 chr3R 19593498 19593517 chr3R 19593593 19593627 16 107 15.0 12.5 13.8 1.1 129 chr3R 19593498 intron Dys + chr3R 19593562 intron Dys + chr3R 19593627 intron Dys + chr3R_16_19590001 chr3R_19590001 RAL-304_100b 3499 chr3R 19683502 19683544 chr3R 19683658 19683714 46 161 12.5 16.5 14.5 3.0 212 chr3R 19683502 intron Naam + chr3R 19683608 intron Naam + chr3R 19683714 intron Naam + chr3R_46_19680001 chr3R_19680001 RAL-304_100b 3500 chr3R 19716185 19716238 chr3R 19716291 19716310 19 99 2.0 0.0 1.0 9.5 125 chr3R 19716185 intergenic CG34286 - chr3R 19716248 intergenic CG34286 - chr3R 19716310 intergenic CG34286 - chr3R_19_19715001 chr3R_19715001 RAL-304_100b 3501 chr3R 19755399 19755458 chr3R 19755519 19755578 49 117 7.0 11.5 9.2 4.8 179 chr3R 19755399 intron GluClalpha + chr3R 19755488 intron GluClalpha + chr3R 19755578 intron GluClalpha + chr3R_49_19755001 chr3R_19755001 RAL-304_100b 3502 chr3R 19783158 19783212 chr3R 19783271 19783325 41 110 7.5 14.0 10.8 3.5 167 chr3R 19783158 intergenic CG11407 +,CG11453 + chr3R 19783242 intergenic CG11407 +,CG11453 + chr3R 19783325 intergenic CG11407 +,CG11453 + chr3R_41_19780001 chr3R_19780001 RAL-304_100b 3503 chr3R 19793868 19793881 chr3R 19793986 19793999 4 118 37.0 9.5 23.2 0.2 131 chr3R 19793868 intergenic bnl - chr3R 19793934 intergenic bnl - chr3R 19793999 intergenic bnl - chr3R_4_19790001 chr3R_19790001 RAL-304_100b 3504 chr3R 19793884 19793925 chr3R 19793985 19794043 39 115 10.5 9.0 9.8 3.6 159 chr3R 19793884 intergenic bnl - chr3R 19793964 intergenic bnl - chr3R 19794043 intergenic bnl - chr3R_39_19790001 chr3R_19790001 RAL-304_100b 3505 chr3R 19830872 19830873 chr3R 19830973 19830975 4 102 1.0 16.0 8.5 0.4 103 chr3R 19830872 intron bnl - chr3R 19830924 intron bnl - chr3R 19830975 intron bnl - chr3R_4_19830001 chr3R_19830001 RAL-304_100b 3506 chr3R 19830874 19830882 chr3R 19830971 19830984 7 101 1.0 15.0 8.0 0.8 110 chr3R 19830874 intron bnl - chr3R 19830929 intron bnl - chr3R 19830984 intron bnl - chr3R_7_19830001 chr3R_19830001 RAL-304_100b 3507 chr3R 19839507 19839518 chr3R 19839764 19839775 8 256 37.0 10.0 23.5 0.3 268 chr3R 19839507 intergenic not near genes chr3R 19839641 intergenic not near genes chr3R 19839775 intergenic not near genes chr3R_8_19835001 chr3R_19835001 RAL-304_100b 3508 chr3R 19839519 19839562 chr3R 19839760 19839819 42 251 15.0 9.5 12.2 3.2 300 chr3R 19839519 intergenic not near genes chr3R 19839669 intergenic not near genes chr3R 19839819 intergenic not near genes chr3R_42_19835001 chr3R_19835001 RAL-304_100b 3509 chr3R 19846936 19846994 chr3R 19847121 19847180 19 183 4.5 9.0 6.8 2.4 244 chr3R 19846936 intergenic CG4662 + chr3R 19847058 intergenic CG4662 + chr3R 19847180 intergenic CG4662 + chr3R_19_19845001 chr3R_19845001 RAL-304_100b 3510 chr3R 19908243 19908305 chr3R 19908352 19908404 22 101 0.0 10.5 5.2 3.5 161 chr3R 19908243 intron RhoGAP92B + chr3R 19908324 intron RhoGAP92B + chr3R 19908404 intron,3` UTR RhoGAP92B +,CR45048 - chr3R_22_19905001 chr3R_19905001 RAL-304_100b 3511 chr3R 19913992 19914044 chr3R 19914110 19914156 30 116 8.5 11.5 10.0 2.7 164 chr3R 19913992 3` UTR RhoGAP92B + chr3R 19914074 3` UTR RhoGAP92B + chr3R 19914156 3` UTR RhoGAP92B + chr3R_30_19910001 chr3R_19910001 RAL-304_100b 3512 chr3R 19943853 19943907 chr3R 19943958 19943981 16 100 19.5 0.0 9.8 1.5 128 chr3R 19943853 intron Hs6st - chr3R 19943917 intron Hs6st - chr3R 19943981 intron Hs6st - chr3R_16_19940001 chr3R_19940001 RAL-304_100b 3513 chr3R 19981499 19981503 chr3R 19981614 19981618 4 115 7.0 0.0 3.5 0.9 119 chr3R 19981499 intron Hs6st - chr3R 19981558 intron Hs6st - chr3R 19981618 intron Hs6st - chr3R_4_19980001 chr3R_19980001 RAL-304_100b 3514 chr3R 20041092 20041136 chr3R 20041219 20041259 27 120 15.0 17.0 16.0 1.6 167 chr3R 20041092 intron CG17193 - chr3R 20041176 intron CG17193 - chr3R 20041259 intron CG17193 - chr3R_27_20040001 chr3R_20040001 RAL-304_100b 3515 chr3R 20041137 20041148 chr3R 20041213 20041241 25 104 11.5 12.5 12.0 1.9 104 chr3R 20041137 intron CG17193 - chr3R 20041189 intron CG17193 - chr3R 20041241 intron CG17193 - chr3R_25_20040001 chr3R_20040001 RAL-304_100b 3516 chr3R 20077010 20077070 chr3R 20077121 20077145 33 104 8.5 10.0 9.2 3.2 135 chr3R 20077010 intergenic not near genes chr3R 20077078 intergenic not near genes chr3R 20077145 intergenic not near genes chr3R_33_20075001 chr3R_20075001 RAL-304_100b 3517 chr3R 20109514 20109564 chr3R 20114743 20114795 copia 18 5228 9.5 10.5 10.0 1.6 5281 chr3R 20109514 intergenic not near genes chr3R 20112154 intergenic not near genes chr3R 20114795 intergenic CG10887 + chr3R_18_20110001 chr3R_20110001 RAL-304_100b 3518 chr3R 20156672 20156680 chr3R 20165867 20165875 roo 13 9194 37.0 18.0 27.5 0.5 9203 chr3R 20156672 intergenic not near genes chr3R 20161274 intergenic not near genes chr3R 20165875 intergenic not near genes chr3R_13_20160001 chr3R_20160001 RAL-304_100b 3519 chr3R 20156684 20156721 chr3R 20165863 20165900 roo 31 9189 19.0 15.5 17.2 1.7 9216 chr3R 20156684 intergenic not near genes chr3R 20161292 intergenic not near genes chr3R 20165900 intergenic not near genes chr3R_31_20160001 chr3R_20160001 RAL-304_100b 3520 chr3R 20203931 20203954 chr3R 20204037 20204060 12 106 1.5 2.0 1.8 4.3 129 chr3R 20203931 intergenic not near genes chr3R 20203996 intergenic not near genes chr3R 20204060 intergenic not near genes chr3R_12_20200001 chr3R_20200001 RAL-304_100b 3521 chr3R 20222523 20222580 chr3R 20222764 20222791 54 232 12.5 15.5 14.0 3.6 268 chr3R 20222523 intron Nlg4 + chr3R 20222657 intron Nlg4 + chr3R 20222791 intron Nlg4 + chr3R_54_20220001 chr3R_20220001 RAL-304_100b 3522 chr3R 20231443 20231491 chr3R 20231597 20231651 33 156 87.5 63.5 75.5 0.4 208 chr3R 20231443 intron Nlg4 + chr3R 20231547 intron Nlg4 + chr3R 20231651 intron Nlg4 + chr3R_33_20230001 chr3R_20230001 RAL-304_100b 3523 chr3R 20245264 20245305 chr3R 20248899 20248940 F-element 11 3634 7.0 11.5 9.2 1.1 3676 chr3R 20245264 3` UTR Nlg4 + chr3R 20247102 intergenic not near genes chr3R 20248940 intergenic not near genes chr3R_11_20245001 chr3R_20245001 RAL-304_100b 3524 chr3R 20266507 20266544 chr3R 20272988 20273035 Burdock 38 6493 3.0 12.5 7.8 4.3 6528 chr3R 20266507 intron cic + chr3R 20269771 intron cic + chr3R 20273035 intron cic + chr3R_38_20265001 chr3R_20265001 RAL-304_100b 3525 chr3R 20282250 20282307 chr3R 20282351 20282393 30 99 1.5 11.5 6.5 4.0 143 chr3R 20282250 intron cic + chr3R 20282322 intron cic + chr3R 20282393 intron cic + chr3R_30_20280001 chr3R_20280001 RAL-304_100b 3526 chr3R 20308162 20308218 chr3R 20308275 20308342 18 116 3.0 0.0 1.5 7.2 180 chr3R 20308162 intergenic not near genes chr3R 20308252 intergenic not near genes chr3R 20308342 intergenic not near genes chr3R_18_20305001 chr3R_20305001 RAL-304_100b 3527 chr3R 20330976 20331028 chr3R 20331487 20331539 roo 23 511 9.0 7.5 8.2 2.5 563 chr3R 20330976 intergenic Sirt2 + chr3R 20331258 intergenic Sirt2 + chr3R 20331539 intergenic not near genes chr3R_23_20330001 chr3R_20330001 RAL-304_100b 3528 chr3R 20450132 20450143 chr3R 20450242 20450253 6 110 0.0 17.5 8.8 0.6 121 chr3R 20450132 intron Gfrl - chr3R 20450192 intron Gfrl - chr3R 20450253 intron Gfrl - chr3R_6_20450001 chr3R_20450001 RAL-304_100b 3529 chr3R 20467066 20467081 chr3R 20467156 20467182 9 96 35.5 18.0 26.8 0.3 116 chr3R 20467066 intron Gfrl - chr3R 20467124 intron Gfrl - chr3R 20467182 intron Gfrl - chr3R_9_20465001 chr3R_20465001 RAL-304_100b 3530 chr3R 20467082 20467113 chr3R 20467150 20467182 45 81 17.5 16.0 16.8 2.5 100 chr3R 20467082 intron Gfrl - chr3R 20467132 intron Gfrl - chr3R 20467182 intron Gfrl - chr3R_45_20465001 chr3R_20465001 RAL-304_100b 3531 chr3R 20512320 20512368 chr3R 20512428 20512441 45 98 14.0 18.0 16.0 2.6 121 chr3R 20512320 intron CG4288 - chr3R 20512380 5` UTR CG4288 - chr3R 20512441 5` UTR CG4288 - chr3R_45_20510001 chr3R_20510001 RAL-304_100b 3532 chr3R 20512980 20513033 chr3R 20515708 20515760 opus 17 2727 7.5 4.5 6.0 2.4 2780 chr3R 20512980 intergenic not near genes chr3R 20514370 intergenic not near genes chr3R 20515760 intergenic not near genes chr3R_17_20510001 chr3R_20510001 RAL-304_100b 3533 chr3R 4475345 4475349 chr3R 20516623 20516646 micropia 5 16041283 60.0 38.0 49.0 0.1 16041301 chr3R 4475345 intron CG31523 - chr3R 12495996 intergenic not near genes chr3R 20516646 intergenic not near genes chr3R_5_12495001 chr3R_12495001 RAL-304_100b 3534 chr3R 20594458 20594508 chr3R 20594573 20594622 14 112 7.5 0.0 3.8 2.9 164 chr3R 20594458 intron bon + chr3R 20594540 intron bon + chr3R 20594622 intron bon + chr3R_14_20590001 chr3R_20590001 RAL-304_100b 3535 chr3R 20596168 20596215 chr3R 20596280 20596315 39 109 5.0 12.5 8.8 4.0 147 chr3R 20596168 intron bon + chr3R 20596242 intron bon + chr3R 20596315 intron bon + chr3R_39_20595001 chr3R_20595001 RAL-304_100b 3536 chr3R 20617491 20617496 chr3R 20617785 20617790 8 293 5.5 17.5 11.5 0.6 299 chr3R 20617491 intergenic CG5466 + chr3R 20617640 intergenic CG5466 + chr3R 20617790 intergenic CG5466 + chr3R_8_20615001 chr3R_20615001 RAL-304_100b 3537 chr3R 20617500 20617518 chr3R 20617769 20617812 7 281 5.5 11.0 8.2 0.8 312 chr3R 20617500 intergenic CG5466 + chr3R 20617656 intergenic CG5466 + chr3R 20617812 intergenic CG5466 + chr3R_7_20615001 chr3R_20615001 RAL-304_100b 3538 chr3R 20722830 20722834 chr3R 20722981 20722986 5 152 39.5 14.0 26.8 0.2 156 chr3R 20722830 intergenic not near genes chr3R 20722908 intergenic not near genes chr3R 20722986 intergenic not near genes chr3R_5_20720001 chr3R_20720001 RAL-304_100b 3539 chr3R 20722835 20722882 chr3R 20722979 20723034 39 147 14.5 12.0 13.2 2.7 199 chr3R 20722835 intergenic not near genes chr3R 20722934 intergenic not near genes chr3R 20723034 intergenic not near genes chr3R_39_20720001 chr3R_20720001 RAL-304_100b 3540 chr3R 20730907 20731061 chr3R 20731032 20731174 29 118 0.0 0.0 0.0 29.0 267 chr3R 20730907 intergenic not near genes chr3R 20731040 intergenic not near genes chr3R 20731174 intergenic CG31205 + chr3R_29_20730001 chr3R_20730001 RAL-304_100b 3541 chr3R 20771712 20771731 chr3R 20771788 20771801 12 92 1.5 10.5 6.0 1.7 89 chr3R 20771712 intron,intron Syp +,Takl1 - chr3R 20771756 intron,intron Syp +,Takl1 - chr3R 20771801 intron,exon Syp +,Takl1 - chr3R_12_20770001 chr3R_20770001 RAL-304_100b 3542 chr3R 20787413 20787458 chr3R 20787528 20787574 31 113 16.0 13.5 14.8 2.0 161 chr3R 20787413 intron Syp + chr3R 20787494 intron Syp + chr3R 20787574 intron Syp + chr3R_31_20785001 chr3R_20785001 RAL-304_100b 3543 chr3R 20854473 20854490 chr3R 20859282 20859304 Doc 8 4810 33.0 20.5 26.8 0.3 4831 chr3R 20854473 intron Ir93a - chr3R 20856888 intron Ir93a - chr3R 20859304 exon Ir93a - chr3R_8_20855001 chr3R_20855001 RAL-304_100b 3544 chr3R 20854500 20854520 chr3R 20859269 20859278 Doc 13 4791 18.0 14.5 16.2 0.8 4778 chr3R 20854500 intron Ir93a - chr3R 20856889 intron Ir93a - chr3R 20859278 exon Ir93a - chr3R_13_20855001 chr3R_20855001 RAL-304_100b 3545 chr3R 20870225 20870284 chr3R 20870335 20870394 72 106 14.0 12.0 13.0 5.1 169 chr3R 20870225 intergenic not near genes chr3R 20870310 intergenic not near genes chr3R 20870394 intergenic not near genes chr3R_72_20870001 chr3R_20870001 RAL-304_100b 3546 chr3R 20899893 20899939 chr3R 20900014 20900060 12 120 5.0 6.5 5.8 1.8 167 chr3R 20899893 intergenic not near genes chr3R 20899976 intergenic not near genes chr3R 20900060 intergenic not near genes chr3R_12_20895001 chr3R_20895001 RAL-304_100b 3547 chr3R 20901629 20901687 chr3R 20901757 20901800 46 126 10.0 11.0 10.5 4.0 171 chr3R 20901629 intergenic CG5621 + chr3R 20901714 intergenic CG5621 + chr3R 20901800 intergenic CG5621 + chr3R_46_20900001 chr3R_20900001 RAL-304_100b 3548 chr3R 20934791 20934833 chr3R 20934895 20934937 49 102 27.0 21.0 24.0 2.0 146 chr3R 20934791 intron CG31191 - chr3R 20934864 intron CG31191 - chr3R 20934937 intron CG31191 - chr3R_49_20930001 chr3R_20930001 RAL-304_100b 3549 chr3R 20934835 20934840 chr3R 20934887 20934944 11 94 20.0 20.5 20.2 0.5 109 chr3R 20934835 intron CG31191 - chr3R 20934890 intron CG31191 - chr3R 20934944 intron CG31191 - chr3R_11_20930001 chr3R_20930001 RAL-304_100b 3550 chr3R 20942788 20942839 chr3R 20942889 20942936 52 97 25.0 20.5 22.8 2.2 148 chr3R 20942788 intron CG31191 - chr3R 20942862 intron CG31191 - chr3R 20942936 intron CG31191 - chr3R_52_20940001 chr3R_20940001 RAL-304_100b 3551 chr3R 21049157 21049204 chr3R 21049316 21049363 20 155 5.0 6.0 5.5 3.1 206 chr3R 21049157 intergenic CG7079 - chr3R 21049260 intergenic CG7079 - chr3R 21049363 intergenic not near genes chr3R_20_21045001 chr3R_21045001 RAL-304_100b 3552 chr3R 21049849 21049907 chr3R 21050067 21050125 17 214 6.5 8.5 7.5 2.0 276 chr3R 21049849 intergenic CG17279 - chr3R 21049987 intergenic CG17279 - chr3R 21050125 exon CG17279 - chr3R_17_21045001 chr3R_21045001 RAL-304_100b 3553 chr3R 21074806 21074817 chr3R 21075050 21075063 12 246 14.0 25.0 19.5 0.6 257 chr3R 21074806 intron dmrt93B + chr3R 21074934 intron dmrt93B + chr3R 21075063 intron dmrt93B + chr3R_12_21070001 chr3R_21070001 RAL-304_100b 3554 chr3R 21074818 21074826 chr3R 21075017 21075072 7 233 12.5 8.5 10.5 0.6 254 chr3R 21074818 intron dmrt93B + chr3R 21074945 intron dmrt93B + chr3R 21075072 intron dmrt93B + chr3R_7_21070001 chr3R_21070001 RAL-304_100b 3555 chr3R 21108013 21108064 chr3R 21108299 21108319 35 281 9.5 11.0 10.2 3.1 306 chr3R 21108013 intergenic Sec15 -,rtet + chr3R 21108166 intergenic Sec15 -,rtet + chr3R 21108319 intergenic rtet +,Sec15 - chr3R_35_21105001 chr3R_21105001 RAL-304_100b 3556 chr3R 21132609 21132649 chr3R 21132717 21132757 9 108 9.0 0.0 4.5 1.6 148 chr3R 21132609 3` UTR Ice2 + chr3R 21132683 3` UTR Ice2 + chr3R 21132757 exon CG7009 - chr3R_9_21130001 chr3R_21130001 RAL-304_100b 3557 chr3R 21141651 21141705 chr3R 21150157 21150210 Tirant 30 8499 15.0 16.0 15.5 1.8 8559 chr3R 21141651 intron SNF4Agamma + chr3R 21145930 intron SNF4Agamma + chr3R 21150210 intron SNF4Agamma + chr3R_30_21145001 chr3R_21145001 RAL-304_100b 3558 chr3R 21154534 21154587 chr3R 21154757 21154825 43 238 12.5 0.0 6.2 6.0 291 chr3R 21154534 intron SNF4Agamma + chr3R 21154680 intron SNF4Agamma + chr3R 21154825 intron SNF4Agamma + chr3R_43_21150001 chr3R_21150001 RAL-304_100b 3559 chr3R 21183237 21183263 chr3R 21183330 21183366 6 101 9.5 14.5 12.0 0.5 129 chr3R 21183237 intron SNF4Agamma + chr3R 21183302 intron SNF4Agamma + chr3R 21183366 intron SNF4Agamma + chr3R_6_21180001 chr3R_21180001 RAL-304_100b 3560 chr3R 21214722 21214761 chr3R 21214919 21214929 19 193 8.0 11.0 9.5 1.8 207 chr3R 21214722 intergenic CG5862 + chr3R 21214826 intergenic CG5862 + chr3R 21214929 intergenic CG5862 + chr3R_19_21210001 chr3R_21210001 RAL-304_100b 3561 chr3R 21239780 21239957 chr3R 21239899 21240047 51 103 0.0 0.0 0.0 51.0 267 chr3R 21239780 intergenic not near genes chr3R 21239914 intergenic not near genes chr3R 21240047 intergenic not near genes chr3R_51_21235001 chr3R_21235001 RAL-304_100b 3562 chr3R 21245832 21245865 chr3R 21245941 21245974 15 107 11.5 8.0 9.8 1.4 142 chr3R 21245832 intergenic CG5892 + chr3R 21245903 intergenic CG5892 + chr3R 21245974 intergenic not near genes chr3R_15_21245001 chr3R_21245001 RAL-304_100b 3563 chr3R 21247671 21247731 chr3R 21247772 21247832 34 98 10.0 11.5 10.8 2.9 161 chr3R 21247671 intron ETHR + chr3R 21247752 intron ETHR + chr3R 21247832 intron ETHR + chr3R_34_21245001 chr3R_21245001 RAL-304_100b 3564 chr3R 21330335 21330347 chr3R 21330458 21330470 15 121 36.0 16.5 26.2 0.6 135 chr3R 21330335 intron CG16791 - chr3R 21330402 intron CG16791 - chr3R 21330470 intron CG16791 - chr3R_15_21330001 chr3R_21330001 RAL-304_100b 3565 chr3R 21330348 21330389 chr3R 21330456 21330512 42 117 12.5 16.0 14.2 2.8 164 chr3R 21330348 intron CG16791 - chr3R 21330430 intron CG16791 - chr3R 21330512 intron CG16791 - chr3R_42_21330001 chr3R_21330001 RAL-304_100b 3566 chr3R 21383295 21383301 chr3R 21383400 21383406 5 105 0.0 5.0 2.5 1.4 111 chr3R 21383295 intergenic not near genes chr3R 21383350 intergenic not near genes chr3R 21383406 intergenic not near genes chr3R_5_21380001 chr3R_21380001 RAL-304_100b 3567 chr3R 21385908 21385950 chr3R 21386010 21386052 16 102 11.5 17.0 14.2 1.1 144 chr3R 21385908 intergenic not near genes chr3R 21385980 intergenic not near genes chr3R 21386052 intergenic not near genes chr3R_16_21385001 chr3R_21385001 RAL-304_100b 3568 chr3R 21422503 21422526 chr3R 21422606 21422629 20 102 39.0 12.5 25.8 0.7 126 chr3R 21422503 intron lbl - chr3R 21422566 intron lbl - chr3R 21422629 intron lbl - chr3R_20_21420001 chr3R_21420001 RAL-304_100b 3569 chr3R 21422528 21422559 chr3R 21422605 21422647 39 95 18.5 12.0 15.2 2.4 119 chr3R 21422528 intron lbl - chr3R 21422588 intron lbl - chr3R 21422647 intron lbl - chr3R_39_21420001 chr3R_21420001 RAL-304_100b 3570 chr3R 21464381 21464427 chr3R 21464492 21464534 7 108 5.0 3.5 4.2 1.3 153 chr3R 21464381 intergenic not near genes chr3R 21464458 intergenic not near genes chr3R 21464534 intergenic not near genes chr3R_7_21460001 chr3R_21460001 RAL-304_100b 3571 chr3R 21471992 21471998 chr3R 21472098 21472103 7 106 40.5 18.0 29.2 0.2 111 chr3R 21471992 intergenic not near genes chr3R 21472048 intergenic not near genes chr3R 21472103 intergenic not near genes chr3R_7_21470001 chr3R_21470001 RAL-304_100b 3572 chr3R 21471999 21472024 chr3R 21472095 21472131 14 104 23.5 17.0 20.2 0.7 132 chr3R 21471999 intergenic not near genes chr3R 21472065 intergenic not near genes chr3R 21472131 intergenic not near genes chr3R_14_21470001 chr3R_21470001 RAL-304_100b 3573 chr3R 21472026 21472033 chr3R 21472092 21472139 9 98 18.5 16.0 17.2 0.5 113 chr3R 21472026 intergenic not near genes chr3R 21472082 intergenic not near genes chr3R 21472139 intergenic not near genes chr3R_9_21470001 chr3R_21470001 RAL-304_100b 3574 chr3R 21481362 21481384 chr3R 21481478 21481484 5 109 34.0 0.0 17.0 0.3 122 chr3R 21481362 intergenic not near genes chr3R 21481423 intergenic not near genes chr3R 21481484 intergenic not near genes chr3R_5_21480001 chr3R_21480001 RAL-304_100b 3575 chr3R 21506850 21506914 chr3R 21506961 21507019 32 107 5.0 15.0 10.0 2.9 169 chr3R 21506850 intron C15 + chr3R 21506934 intron C15 + chr3R 21507019 intron C15 + chr3R_32_21505001 chr3R_21505001 RAL-304_100b 3576 chr3R 21751134 21751178 chr3R 21753906 21753964 48 2778 153.5 103.0 128.2 0.4 2830 chr3R 21751134 exon CG31233 + chr3R 21752549 exon CG31233 + chr3R 21753964 intergenic CG31198 + chr3R_48_21750001 chr3R_21750001 RAL-304_100b 3577 chr3R 21759012 21759064 chr3R 21759140 21759192 42 119 10.5 18.0 14.2 2.8 180 chr3R 21759012 exon CG42335 + chr3R 21759102 exon CG42335 + chr3R 21759192 exon CG42335 + chr3R_42_21755001 chr3R_21755001 RAL-304_100b 3578 chr3R 21761099 21761116 chr3R 21768516 21768532 mdg1 18 7415 39.0 22.0 30.5 0.6 7433 chr3R 21761099 exon CG42335 + chr3R 21764816 intron CG42335 + chr3R 21768532 exon CG42335 + chr3R_18_21760001 chr3R_21760001 RAL-304_100b 3579 chr3R 21761118 21761131 chr3R 21768512 21768548 mdg1 15 7408 33.5 19.5 26.5 0.5 7430 chr3R 21761118 exon CG42335 + chr3R 21764833 intron CG42335 + chr3R 21768548 exon CG42335 + chr3R_15_21760001 chr3R_21760001 RAL-304_100b 3580 chr3R 21761132 21761154 chr3R 21768509 21768566 mdg1 27 7405 21.0 17.0 19.0 1.4 7434 chr3R 21761132 exon CG42335 + chr3R 21764849 intron CG42335 + chr3R 21768566 exon CG42335 + chr3R_27_21760001 chr3R_21760001 RAL-304_100b 3581 chr3R 21903616 21903635 chr3R 21903734 21903757 21 121 0.0 22.0 11.0 1.8 141 chr3R 21903616 intron CG6678 + chr3R 21903686 intron CG6678 + chr3R 21903757 intron CG6678 + chr3R_21_21900001 chr3R_21900001 RAL-304_100b 3582 chr3R 4542412 4542552 chr3R 21907534 21907534 6 17365068 76.0 76.0 76.0 0.1 17365122 chr3R 4542412 intron,exon CG34357 -,Mur82C + chr3R 13224973 intron Ace - chr3R 21907534 intergenic CG6678 + chr3R_6_13225001 chr3R_13225001 RAL-304_100b 3583 chr3R 8339246 8339247 chr3R 21907534 21907534 28 13568288 72.5 76.0 74.2 0.4 13568288 chr3R 8339246 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907534 intergenic CG6678 + chr3R_28_15120001 chr3R_15120001 RAL-304_100b 3584 chr3R 9620954 9620956 chr3R 21907534 21907534 8 12286578 48.5 76.0 62.2 0.1 12286580 chr3R 9620954 intron CG8312 + chr3R 15764244 intergenic not near genes chr3R 21907534 intergenic CG6678 + chr3R_8_15760001 chr3R_15760001 RAL-304_100b 3585 chr3R 13693028 13693028 chr3R 21907534 21907534 4 8214506 56.5 76.0 66.2 0.1 8214506 chr3R 13693028 3` UTR flfl + chr3R 17800281 exon CG17803 - chr3R 21907534 intergenic CG6678 + chr3R_4_17800001 chr3R_17800001 RAL-304_100b 3586 chr3R 15286987 15287025 chr3R 21907534 21907534 8 6620542 82.0 76.0 79.0 0.1 6620547 chr3R 15286987 intron Tm1 + chr3R 18597260 intron,exon qin +,CG14304 - chr3R 21907534 intergenic CG6678 + chr3R_8_18595001 chr3R_18595001 RAL-304_100b 3587 chr3R 17346245 17346247 chr3R 21907534 21907534 6 4561287 74.0 76.0 75.0 0.1 4561289 chr3R 17346245 intron beat-IIa - chr3R 19626890 intron CG6231 - chr3R 21907534 intergenic CG6678 + chr3R_6_19625001 chr3R_19625001 RAL-304_100b 3588 chr3R 17389054 17389054 chr3R 21907534 21907534 6 4518480 59.0 76.0 67.5 0.1 4518480 chr3R 17389054 intron,3` UTR Brf -,lute + chr3R 19648294 5` UTR CG6195 - chr3R 21907534 intergenic CG6678 + chr3R_6_19645001 chr3R_19645001 RAL-304_100b 3589 chr3R 21907534 21907534 chr3R 24389465 24389465 4 2481931 82.0 48.0 65.0 0.1 2481931 chr3R 21907534 intergenic CG6678 + chr3R 23148500 intergenic not near genes chr3R 24389465 intron CG5768 - chr3R_4_23145001 chr3R_23145001 RAL-304_100b 3590 chr3R 21907534 21907534 chr3R 26659333 26659336 7 4751800 82.0 88.5 85.2 0.1 4751802 chr3R 21907534 intergenic CG6678 + chr3R 24283435 intergenic CR45662 - chr3R 26659336 intron beat-VII - chr3R_7_24280001 chr3R_24280001 RAL-304_100b 3591 chr3R 21907534 21907534 chr3R 28831798 28831814 68 6924268 82.0 101.5 91.8 0.7 6924280 chr3R 21907534 intergenic CG6678 + chr3R 25369674 intron Fur1 - chr3R 28831814 intron WASp - chr3R_68_25365001 chr3R_25365001 RAL-304_100b 3592 chr3R 21907534 21907534 chr3R 29013339 29013340 33 7105806 82.0 74.0 78.0 0.4 7105806 chr3R 21907534 intergenic CG6678 + chr3R 25460437 intron Fur1 - chr3R 29013340 intron wat - chr3R_33_25460001 chr3R_25460001 RAL-304_100b 3593 chr3R 8339246 8339247 chr3R 21907535 21907535 17 13568288 72.5 76.5 74.5 0.2 13568289 chr3R 8339246 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907535 intergenic CG6678 + chr3R_17_15120001 chr3R_15120001 RAL-304_100b 3594 chr3R 9620954 9620956 chr3R 21907535 21907535 17 12286579 48.5 76.5 62.5 0.3 12286581 chr3R 9620954 intron CG8312 + chr3R 15764244 intergenic not near genes chr3R 21907535 intergenic CG6678 + chr3R_17_15760001 chr3R_15760001 RAL-304_100b 3595 chr3R 13693028 13693028 chr3R 21907535 21907535 5 8214507 56.5 76.5 66.5 0.1 8214507 chr3R 13693028 3` UTR flfl + chr3R 17800282 exon CG17803 - chr3R 21907535 intergenic CG6678 + chr3R_5_17800001 chr3R_17800001 RAL-304_100b 3596 chr3R 21907535 21907535 chr3R 28831801 28831803 109 6924266 81.5 100.0 90.8 1.2 6924268 chr3R 21907535 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831803 intron WASp - chr3R_109_25365001 chr3R_25365001 RAL-304_100b 3597 chr3R 8339246 8339247 chr3R 21907536 21907536 6 13568289 72.5 78.0 75.2 0.1 13568290 chr3R 8339246 intergenic not near genes chr3R 15123391 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_6_15120001 chr3R_15120001 RAL-304_100b 3598 chr3R 9620956 9620956 chr3R 21907536 21907536 8 12286580 48.5 78.0 63.2 0.1 12286580 chr3R 9620956 intron CG8312 + chr3R 15764246 intergenic not near genes chr3R 21907536 intergenic CG6678 + chr3R_8_15760001 chr3R_15760001 RAL-304_100b 3599 chr3R 21907536 21907536 chr3R 26659333 26659337 8 4751799 81.5 88.5 85.0 0.1 4751801 chr3R 21907536 intergenic CG6678 + chr3R 24283436 intergenic CR45662 - chr3R 26659337 intron beat-VII - chr3R_8_24280001 chr3R_24280001 RAL-304_100b 3600 chr3R 21907536 21907536 chr3R 28831798 28831804 130 6924266 81.5 101.5 91.5 1.4 6924268 chr3R 21907536 intergenic CG6678 + chr3R 25369670 intron Fur1 - chr3R 28831804 intron WASp - chr3R_130_25365001 chr3R_25365001 RAL-304_100b 3601 chr3R 21907536 21907536 chr3R 29013340 29013417 5 7105819 81.5 74.5 78.0 0.1 7105881 chr3R 21907536 intergenic CG6678 + chr3R 25460476 intron Fur1 - chr3R 29013417 intron wat - chr3R_5_25460001 chr3R_25460001 RAL-304_100b 3602 chr3R 21918997 21918999 chr3R 21919090 21919104 4 102 0.0 18.0 9.0 0.4 107 chr3R 21918997 intergenic not near genes chr3R 21919050 intergenic not near genes chr3R 21919104 intergenic not near genes chr3R_4_21915001 chr3R_21915001 RAL-304_100b 3603 chr3R 21919001 21919015 chr3R 21919076 21919120 11 100 0.0 14.5 7.2 1.3 119 chr3R 21919001 intergenic not near genes chr3R 21919060 intergenic not near genes chr3R 21919120 intergenic not near genes chr3R_11_21915001 chr3R_21915001 RAL-304_100b 3604 chr3R 21937205 21937234 chr3R 21937307 21937336 24 101 15.0 22.5 18.8 1.2 131 chr3R 21937205 intergenic not near genes chr3R 21937270 intergenic not near genes chr3R 21937336 intergenic not near genes chr3R_24_21935001 chr3R_21935001 RAL-304_100b 3605 chr3R 21985209 21985213 chr3R 21985339 21985343 6 130 17.5 5.0 11.2 0.5 134 chr3R 21985209 intron Eip93F + chr3R 21985276 intron Eip93F + chr3R 21985343 intron Eip93F + chr3R_6_21985001 chr3R_21985001 RAL-304_100b 3606 chr3R 21985214 21985254 chr3R 21985338 21985379 30 129 6.5 4.5 5.5 4.6 165 chr3R 21985214 intron Eip93F + chr3R 21985296 intron Eip93F + chr3R 21985379 intron Eip93F + chr3R_30_21985001 chr3R_21985001 RAL-304_100b 3607 chr3R 22055534 22055589 chr3R 22055748 22055803 27 209 7.5 14.5 11.0 2.2 269 chr3R 22055534 intron how + chr3R 22055668 intron how + chr3R 22055803 intron how + chr3R_27_22055001 chr3R_22055001 RAL-304_100b 3608 chr3R 22074877 22074878 chr3R 22082924 22082955 19 8053 89.0 125.0 107.0 0.2 8078 chr3R 22074877 3` UTR how + chr3R 22078916 3` UTR how + chr3R 22082955 exon CG13408 + chr3R_19_22075001 chr3R_22075001 RAL-304_100b 3609 chr3R 22074875 22074926 chr3R 22082957 22082978 22 8065 90.0 116.5 103.2 0.2 8103 chr3R 22074875 3` UTR how + chr3R 22078926 3` UTR how + chr3R 22082978 exon CG13408 + chr3R_22_22075001 chr3R_22075001 RAL-304_100b 3610 chr3R 22084608 22084613 chr3R 22084711 22084727 6 112 0.0 12.5 6.2 0.8 119 chr3R 22084608 intergenic not near genes chr3R 22084668 intergenic not near genes chr3R 22084727 intergenic not near genes chr3R_6_22080001 chr3R_22080001 RAL-304_100b 3611 chr3R 22084615 22084624 chr3R 22084709 22084738 6 110 0.0 11.5 5.8 0.9 123 chr3R 22084615 intergenic not near genes chr3R 22084676 intergenic not near genes chr3R 22084738 intergenic not near genes chr3R_6_22080001 chr3R_22080001 RAL-304_100b 3612 chr3R 22108330 22108391 chr3R 22108587 22108623 65 249 15.5 26.5 21.0 3.0 293 chr3R 22108330 intron CG5778 - chr3R 22108476 intron CG5778 - chr3R 22108623 intron CG5778 - chr3R_65_22105001 chr3R_22105001 RAL-304_100b 3613 chr3R 22234062 22234097 chr3R 22234163 22234199 33 98 15.0 22.5 18.8 1.7 137 chr3R 22234062 intron SKIP + chr3R 22234130 intron SKIP + chr3R 22234199 intron SKIP + chr3R_33_22230001 chr3R_22230001 RAL-304_100b 3614 chr3R 22234663 22234714 chr3R 22236007 22236058 pogo 18 1333 7.5 11.0 9.2 1.8 1395 chr3R 22234663 intron SKIP + chr3R 22235360 intron SKIP + chr3R 22236058 intron SKIP + chr3R_18_22235001 chr3R_22235001 RAL-304_100b 3615 chr3R 22239470 22239525 chr3R 22248555 22248598 roo 28 9075 14.5 1.5 8.0 3.1 9128 chr3R 22239470 intron SKIP + chr3R 22244034 intron SKIP + chr3R 22248598 intron SKIP + chr3R_28_22240001 chr3R_22240001 RAL-304_100b 3616 chr3R 22262726 22262734 chr3R 22262828 22262836 7 102 17.0 36.0 26.5 0.3 110 chr3R 22262726 intron SKIP + chr3R 22262781 intron SKIP + chr3R 22262836 intron SKIP + chr3R_7_22260001 chr3R_22260001 RAL-304_100b 3617 chr3R 22348504 22348537 chr3R 22349263 22349306 15 765 10.0 11.5 10.8 1.3 802 chr3R 22348504 intergenic not near genes chr3R 22348905 intergenic not near genes chr3R 22349306 intergenic not near genes chr3R_15_22345001 chr3R_22345001 RAL-304_100b 3618 chr3R 22421642 22421698 chr3R 22421750 22421806 55 105 15.0 10.0 12.5 4.1 164 chr3R 22421642 intron mats + chr3R 22421724 intron mats + chr3R 22421806 intron mats + chr3R_55_22420001 chr3R_22420001 RAL-304_100b 3619 chr3R 22428554 22428609 chr3R 22428653 22428694 50 96 11.0 16.5 13.8 3.4 140 chr3R 22428554 intron CG13847 - chr3R 22428624 intron CG13847 - chr3R 22428694 intron CG13847 - chr3R_50_22425001 chr3R_22425001 RAL-304_100b 3620 chr3R 22433067 22433115 chr3R 22433192 22433219 23 123 12.5 23.5 18.0 1.2 152 chr3R 22433067 intron CG13847 - chr3R 22433143 intron CG13847 - chr3R 22433219 intron CG13847 - chr3R_23_22430001 chr3R_22430001 RAL-304_100b 3621 chr3R 22450521 22450574 chr3R 22453185 22453239 NOF 41 2660 20.5 19.5 20.0 2.0 2718 chr3R 22450521 intron CG34376 + chr3R 22451880 intron CG34376 + chr3R 22453239 intron CG34376 + chr3R_41_22450001 chr3R_22450001 RAL-304_100b 3622 chr3R 22499828 22499836 chr3R 22499912 22499922 8 93 0.5 18.5 9.5 0.8 94 chr3R 22499828 intron Octbeta1R + chr3R 22499875 intron Octbeta1R + chr3R 22499922 intron Octbeta1R + chr3R_8_22495001 chr3R_22495001 RAL-304_100b 3623 chr3R 22499837 22499840 chr3R 22499910 22499941 8 92 1.0 18.0 9.5 0.8 104 chr3R 22499837 intron Octbeta1R + chr3R 22499889 intron Octbeta1R + chr3R 22499941 intron Octbeta1R + chr3R_8_22495001 chr3R_22495001 RAL-304_100b 3624 chr3R 22659242 22659246 chr3R 22659344 22659348 4 102 59.0 33.5 46.2 0.1 106 chr3R 22659242 intron wake + chr3R 22659295 intron wake + chr3R 22659348 intron wake + chr3R_4_22655001 chr3R_22655001 RAL-304_100b 3625 chr3R 22672277 22672330 chr3R 22672395 22672448 36 118 11.0 10.5 10.8 3.1 171 chr3R 22672277 intron wake + chr3R 22672362 intron wake + chr3R 22672448 intron wake + chr3R_36_22670001 chr3R_22670001 RAL-304_100b 3626 chr3R 22769067 22769125 chr3R 22769169 22769227 44 97 12.5 16.5 14.5 2.8 160 chr3R 22769067 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769147 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769227 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R_44_22765001 chr3R_22765001 RAL-304_100b 3627 chr3R 22792244 22792252 chr3R 22792433 22792441 6 189 48.5 17.5 33.0 0.2 197 chr3R 22792244 intron CG7029 + chr3R 22792342 exon CG7029 + chr3R 22792441 exon CG7029 + chr3R_6_22790001 chr3R_22790001 RAL-304_100b 3628 chr3R 22792255 22792259 chr3R 22792432 22792438 4 181 45.0 15.5 30.2 0.1 183 chr3R 22792255 intron CG7029 + chr3R 22792346 exon CG7029 + chr3R 22792438 exon CG7029 + chr3R_4_22790001 chr3R_22790001 RAL-304_100b 3629 chr3R 22792260 22792300 chr3R 22792431 22792454 42 174 21.5 15.0 18.2 2.2 194 chr3R 22792260 exon CG7029 + chr3R 22792357 exon CG7029 + chr3R 22792454 exon CG7029 + chr3R_42_22790001 chr3R_22790001 RAL-304_100b 3630 chr3R 22827977 22828026 chr3R 22828097 22828146 34 117 7.5 13.0 10.2 3.0 169 chr3R 22827977 intergenic not near genes chr3R 22828062 intergenic not near genes chr3R 22828146 intergenic not near genes chr3R_34_22825001 chr3R_22825001 RAL-304_100b 3631 chr3R 22842372 22842419 chr3R 22842486 22842543 40 118 13.5 15.5 14.5 2.6 171 chr3R 22842372 intergenic not near genes chr3R 22842458 intergenic not near genes chr3R 22842543 intergenic not near genes chr3R_40_22840001 chr3R_22840001 RAL-304_100b 3632 chr3R 22847133 22847191 chr3R 22847448 22847493 41 308 16.0 11.0 13.5 2.8 360 chr3R 22847133 intergenic not near genes chr3R 22847313 intergenic not near genes chr3R 22847493 intergenic not near genes chr3R_41_22845001 chr3R_22845001 RAL-304_100b 3633 chr3R 22863909 22863931 chr3R 22864000 22864034 20 101 3.5 36.0 19.8 1.0 125 chr3R 22863909 intergenic not near genes chr3R 22863972 intergenic not near genes chr3R 22864034 intergenic not near genes chr3R_20_22860001 chr3R_22860001 RAL-304_100b 3634 chr3R 22877272 22877330 chr3R 22877425 22877483 40 144 17.0 12.0 14.5 2.6 211 chr3R 22877272 intergenic not near genes chr3R 22877378 intergenic not near genes chr3R 22877483 intergenic not near genes chr3R_40_22875001 chr3R_22875001 RAL-304_100b 3635 chr3R 22881183 22881188 chr3R 22884914 22884919 Doc 4 3731 14.0 8.0 11.0 0.3 3736 chr3R 22881183 intergenic not near genes chr3R 22883051 intergenic not near genes chr3R 22884919 intergenic not near genes chr3R_4_22880001 chr3R_22880001 RAL-304_100b 3636 chr3R 22887363 22887415 chr3R 22887464 22887516 54 99 15.0 14.5 14.8 3.4 153 chr3R 22887363 intergenic not near genes chr3R 22887440 intergenic not near genes chr3R 22887516 intergenic not near genes chr3R_54_22885001 chr3R_22885001 RAL-304_100b 3637 chr3R 22919133 22919188 chr3R 22919255 22919283 62 113 14.5 17.5 16.0 3.6 150 chr3R 22919133 intron klg + chr3R 22919208 intron klg + chr3R 22919283 intron klg + chr3R_62_22915001 chr3R_22915001 RAL-304_100b 3638 chr3R 22945939 22945973 chr3R 22946044 22946082 7 106 1.5 7.0 4.2 1.3 143 chr3R 22945939 intron klg + chr3R 22946010 intron klg + chr3R 22946082 intron klg + chr3R_7_22945001 chr3R_22945001 RAL-304_100b 3639 chr3R 22952119 22952148 chr3R 22952215 22952241 28 97 26.0 12.0 19.0 1.4 122 chr3R 22952119 intron klg + chr3R 22952180 intron klg + chr3R 22952241 intron klg + chr3R_28_22950001 chr3R_22950001 RAL-304_100b 3640 chr3R 22993480 22993538 chr3R 22993640 22993686 45 156 14.0 15.0 14.5 2.9 206 chr3R 22993480 intron Nha2 - chr3R 22993583 intron Nha2 - chr3R 22993686 intron Nha2 - chr3R_45_22990001 chr3R_22990001 RAL-304_100b 3641 chr3R 23011355 23011357 chr3R 23011471 23011478 5 120 39.5 12.5 26.0 0.2 123 chr3R 23011355 intergenic not near genes chr3R 23011416 intergenic not near genes chr3R 23011478 intergenic CR44225 - chr3R_5_23010001 chr3R_23010001 RAL-304_100b 3642 chr3R 23011358 23011405 chr3R 23011469 23011491 36 118 12.5 11.5 12.0 2.8 133 chr3R 23011358 intergenic not near genes chr3R 23011424 intergenic CR44225 - chr3R 23011491 intergenic CR44225 - chr3R_36_23010001 chr3R_23010001 RAL-304_100b 3643 chr3R 23064148 23064205 chr3R 23064282 23064339 65 127 16.0 21.5 18.8 3.3 191 chr3R 23064148 exon CG17111 - chr3R 23064244 intron CG17111 - chr3R 23064339 exon CG17111 - chr3R_65_23060001 chr3R_23060001 RAL-304_100b 3644 chr3R 23064868 23064901 chr3R 23064983 23065017 27 116 0.0 17.0 8.5 2.8 149 chr3R 23064868 intron CG17111 - chr3R 23064942 intron CG17111 - chr3R 23065017 intron CG17111 - chr3R_27_23060001 chr3R_23060001 RAL-304_100b 3645 chr3R 23070633 23070700 chr3R 23070738 23070803 6 104 0.0 0.0 0.0 6.0 170 chr3R 23070633 3` UTR CG13830 - chr3R 23070718 3` UTR CG13830 - chr3R 23070803 3` UTR CG13830 - chr3R_6_23070001 chr3R_23070001 RAL-304_100b 3646 chr3R 23073627 23073687 chr3R 23073741 23073800 46 108 9.5 4.5 7.0 5.8 173 chr3R 23073627 intron CG13830 - chr3R 23073714 intron CG13830 - chr3R 23073800 intron CG13830 - chr3R_46_23070001 chr3R_23070001 RAL-304_100b 3647 chr3R 23085551 23085602 chr3R 23085691 23085726 63 137 19.5 23.0 21.2 2.8 175 chr3R 23085551 intron CG13830 - chr3R 23085638 intron CG13830 - chr3R 23085726 intron CG13830 - chr3R_63_23085001 chr3R_23085001 RAL-304_100b 3648 chr3R 23145139 23145195 chr3R 23145236 23145286 76 95 17.5 23.0 20.2 3.6 147 chr3R 23145139 intergenic not near genes chr3R 23145212 intergenic not near genes chr3R 23145286 intergenic not near genes chr3R_76_23145001 chr3R_23145001 RAL-304_100b 3649 chr3R 23147440 23147495 chr3R 23147543 23147592 50 88 19.0 9.5 14.2 3.3 152 chr3R 23147440 intergenic not near genes chr3R 23147516 intergenic not near genes chr3R 23147592 intergenic not near genes chr3R_50_23145001 chr3R_23145001 RAL-304_100b 3650 chr3R 14879109 14879109 chr3R 23164986 23165008 4 8285883 0.0 51.5 25.8 0.1 8285899 chr3R 14879109 intergenic CG3631 + chr3R 19022058 3` UTR gukh + chr3R 23165008 intergenic not near genes chr3R_4_19020001 chr3R_19020001 RAL-304_100b 3651 chr3R 23168057 23168074 chr3R 23168126 23168151 19 81 16.5 14.0 15.2 1.2 94 chr3R 23168057 intergenic Irk1 + chr3R 23168104 intergenic Irk1 + chr3R 23168151 intergenic Irk1 + chr3R_19_23165001 chr3R_23165001 RAL-304_100b 3652 chr3R 23204514 23204574 chr3R 23204643 23204698 42 127 10.0 12.5 11.2 3.4 184 chr3R 23204514 intron cnc - chr3R 23204606 intron cnc - chr3R 23204698 intron cnc - chr3R_42_23200001 chr3R_23200001 RAL-304_100b 3653 chr3R 23217454 23217501 chr3R 23217786 23217838 11 337 77.5 117.5 97.5 0.1 384 chr3R 23217454 intron cnc - chr3R 23217646 intron cnc - chr3R 23217838 intron cnc - chr3R_11_23215001 chr3R_23215001 RAL-304_100b 3654 chr3R 23318387 23318397 chr3R 23318519 23318529 7 132 0.0 8.0 4.0 1.4 142 chr3R 23318387 intron pnt - chr3R 23318458 intron pnt - chr3R 23318529 intron pnt - chr3R_7_23315001 chr3R_23315001 RAL-304_100b 3655 chr3R 23319662 23319676 chr3R 23319752 23319779 9 100 0.0 9.0 4.5 1.6 117 chr3R 23319662 intron pnt - chr3R 23319720 intron pnt - chr3R 23319779 intron pnt - chr3R_9_23315001 chr3R_23315001 RAL-304_100b 3656 chr3R 23338870 23338906 chr3R 23338971 23338975 21 94 32.5 21.0 26.8 0.8 105 chr3R 23338870 intron pnt - chr3R 23338922 intron pnt - chr3R 23338975 intron pnt - chr3R_21_23335001 chr3R_23335001 RAL-304_100b 3657 chr3R 23338907 23338916 chr3R 23338970 23339017 12 91 25.5 20.5 23.0 0.5 110 chr3R 23338907 intron pnt - chr3R 23338962 intron pnt - chr3R 23339017 intron pnt - chr3R_12_23335001 chr3R_23335001 RAL-304_100b 3658 chr3R 23346546 23346576 chr3R 23346649 23346670 30 102 15.5 16.5 16.0 1.8 124 chr3R 23346546 intergenic pnt - chr3R 23346608 intergenic pnt - chr3R 23346670 intergenic not near genes chr3R_30_23345001 chr3R_23345001 RAL-304_100b 3659 chr3R 23356991 23357012 chr3R 23357102 23357107 11 109 25.5 9.5 17.5 0.6 116 chr3R 23356991 intron Sec13 + chr3R 23357049 intron Sec13 + chr3R 23357107 intron Sec13 + chr3R_11_23355001 chr3R_23355001 RAL-304_100b 3660 chr3R 23367931 23367948 chr3R 23368063 23368079 8 128 40.0 39.5 39.8 0.2 148 chr3R 23367931 intergenic not near genes chr3R 23368005 intergenic not near genes chr3R 23368079 intergenic not near genes chr3R_8_23365001 chr3R_23365001 RAL-304_100b 3661 chr3R 23497923 23497975 chr3R 23498031 23498084 23 99 14.0 23.0 18.5 1.2 161 chr3R 23497923 intergenic not near genes chr3R 23498004 intergenic not near genes chr3R 23498084 intergenic not near genes chr3R_23_23495001 chr3R_23495001 RAL-304_100b 3662 chr3R 23558374 23558388 chr3R 23560180 23560194 Bari1 9 1805 23.0 4.5 13.8 0.6 1820 chr3R 23558374 intron beat-IV + chr3R 23559284 intron beat-IV + chr3R 23560194 intron beat-IV + chr3R_9_23555001 chr3R_23555001 RAL-304_100b 3663 chr3R 23558389 23558427 chr3R 23560179 23560233 Bari1 21 1802 8.5 4.5 6.5 2.8 1844 chr3R 23558389 intron beat-IV + chr3R 23559311 intron beat-IV + chr3R 23560233 intron beat-IV + chr3R_21_23555001 chr3R_23555001 RAL-304_100b 3664 chr3R 23564417 23564475 chr3R 23564586 23564644 43 167 9.0 9.0 9.0 4.3 227 chr3R 23564417 intron beat-IV + chr3R 23564530 intron beat-IV + chr3R 23564644 intron beat-IV + chr3R_43_23560001 chr3R_23560001 RAL-304_100b 3665 chr3R 23597829 23597886 chr3R 23597930 23597947 25 96 13.0 8.0 10.5 2.2 118 chr3R 23597829 intron CG10183 - chr3R 23597888 exon CG10183 - chr3R 23597947 exon CG10183 - chr3R_25_23595001 chr3R_23595001 RAL-304_100b 3666 chr3R 23604017 23604039 chr3R 23604142 23604164 10 124 18.5 7.5 13.0 0.7 147 chr3R 23604017 intron CG10184 - chr3R 23604090 intron CG10184 - chr3R 23604164 intron CG10184 - chr3R_10_23600001 chr3R_23600001 RAL-304_100b 3667 chr3R 10451877 10451880 chr3R 23614722 23614722 5 13162844 78.5 18.0 48.2 0.1 13162845 chr3R 10451877 intergenic not near genes chr3R 17033300 3` UTR CG31268 + chr3R 23614722 intron CG31145 - chr3R_5_17030001 chr3R_17030001 RAL-304_100b 3668 chr3R 23627730 23627771 chr3R 23627837 23627867 8 101 9.0 0.0 4.5 1.5 137 chr3R 23627730 intron CG31145 - chr3R 23627798 intron CG31145 - chr3R 23627867 intron CG31145 - chr3R_8_23625001 chr3R_23625001 RAL-304_100b 3669 chr3R 23684675 23684726 chr3R 23685181 23685221 roo 53 505 20.0 28.0 24.0 2.1 546 chr3R 23684675 exon CG18754 + chr3R 23684948 intron CG18754 + chr3R 23685221 exon CG18754 + chr3R_53_23680001 chr3R_23680001 RAL-304_100b 3670 chr3R 23714055 23714068 chr3R 23714167 23714180 9 112 24.0 7.5 15.8 0.5 125 chr3R 23714055 intron nau - chr3R 23714118 intron nau - chr3R 23714180 intron nau - chr3R_9_23710001 chr3R_23710001 RAL-304_100b 3671 chr3R 23823323 23823382 chr3R 23823453 23823492 46 125 13.5 16.5 15.0 2.9 169 chr3R 23823323 intron CG34355 + chr3R 23823408 intron CG34355 + chr3R 23823492 intron CG34355 + chr3R_46_23820001 chr3R_23820001 RAL-304_100b 3672 chr3R 23835383 23835388 chr3R 23844558 23844563 roo 4 9174 32.5 0.5 16.5 0.2 9180 chr3R 23835383 intron CG34355 + chr3R 23839973 intron CG34355 + chr3R 23844563 intron CG34355 + chr3R_4_23835001 chr3R_23835001 RAL-304_100b 3673 chr3R 23835394 23835399 chr3R 23844554 23844574 roo 5 9172 27.5 0.5 14.0 0.3 9180 chr3R 23835394 intron CG34355 + chr3R 23839984 intron CG34355 + chr3R 23844574 intron CG34355 + chr3R_5_23835001 chr3R_23835001 RAL-304_100b 3674 chr3R 23851062 23851089 chr3R 23858754 23858771 opus 11 7691 7.0 19.0 13.0 0.8 7709 chr3R 23851062 3` UTR CG34355 + chr3R 23854916 intergenic not near genes chr3R 23858771 intergenic not near genes chr3R_11_23850001 chr3R_23850001 RAL-304_100b 3675 chr3R 23865007 23865018 chr3R 23865121 23865132 8 112 40.5 10.0 25.2 0.3 125 chr3R 23865007 intron Pli - chr3R 23865070 intron Pli - chr3R 23865132 intron Pli - chr3R_8_23865001 chr3R_23865001 RAL-304_100b 3676 chr3R 23865019 23865063 chr3R 23865118 23865177 44 111 10.0 9.0 9.5 4.2 158 chr3R 23865019 intron Pli - chr3R 23865098 intron Pli - chr3R 23865177 intron Pli - chr3R_44_23865001 chr3R_23865001 RAL-304_100b 3677 chr3R 23884988 23885045 chr3R 23885119 23885176 36 128 8.5 7.5 8.0 4.0 188 chr3R 23884988 intron Pli - chr3R 23885082 intron Pli - chr3R 23885176 intron Pli - chr3R_36_23885001 chr3R_23885001 RAL-304_100b 3678 chr3R 23888065 23888107 chr3R 23888175 23888218 23 109 11.0 13.0 12.0 1.8 153 chr3R 23888065 intron Pli - chr3R 23888142 intron Pli - chr3R 23888218 intron Pli - chr3R_23_23885001 chr3R_23885001 RAL-304_100b 3679 chr3R 23938650 23938702 chr3R 23939107 23939138 42 451 9.5 11.0 10.2 3.8 488 chr3R 23938650 intron Gdh - chr3R 23938894 intron Gdh - chr3R 23939138 intron Gdh - chr3R_42_23935001 chr3R_23935001 RAL-304_100b 3680 chr3R 23944885 23944936 chr3R 23944995 23945046 55 108 6.0 16.0 11.0 4.6 161 chr3R 23944885 intron CG12268 - chr3R 23944966 intron CG12268 - chr3R 23945046 exon CG12268 - chr3R_55_23940001 chr3R_23940001 RAL-304_100b 3681 chr3R 23949015 23949068 chr3R 23949117 23949168 44 100 12.0 8.0 10.0 4.0 153 chr3R 23949015 intergenic not near genes chr3R 23949092 intergenic not near genes chr3R 23949168 intergenic not near genes chr3R_44_23945001 chr3R_23945001 RAL-304_100b 3682 chr3R 24020789 24020829 chr3R 24021308 24021339 21 515 21.5 0.0 10.8 1.8 550 chr3R 24020789 intron KrT95D - chr3R 24021064 intron KrT95D - chr3R 24021339 intron KrT95D - chr3R_21_24020001 chr3R_24020001 RAL-304_100b 3683 chr3R 24020830 24020841 chr3R 24021305 24021339 6 486 13.5 0.0 6.8 0.8 509 chr3R 24020830 intron KrT95D - chr3R 24021084 intron KrT95D - chr3R 24021339 intron KrT95D - chr3R_6_24020001 chr3R_24020001 RAL-304_100b 3684 chr3R 24072062 24072080 chr3R 24072525 24072528 jockey 14 460 38.5 0.0 19.2 0.7 466 chr3R 24072062 intron 4EHP - chr3R 24072295 intron 4EHP - chr3R 24072528 intron 4EHP - chr3R_14_24070001 chr3R_24070001 RAL-304_100b 3685 chr3R 24072081 24072123 chr3R 24072524 24072576 jockey 16 449 13.5 0.0 6.8 2.1 495 chr3R 24072081 intron 4EHP - chr3R 24072328 intron 4EHP - chr3R 24072576 intron 4EHP - chr3R_16_24070001 chr3R_24070001 RAL-304_100b 3686 chr3R 24076895 24076907 chr3R 24078387 24078399 hobo 10 1490 38.0 23.0 30.5 0.3 1504 chr3R 24076895 intron 4EHP - chr3R 24077647 intron 4EHP - chr3R 24078399 intron 4EHP - chr3R_10_24075001 chr3R_24075001 RAL-304_100b 3687 chr3R 24076909 24076915 chr3R 24078386 24078405 hobo 6 1483 36.5 22.5 29.5 0.2 1496 chr3R 24076909 intron 4EHP - chr3R 24077657 intron 4EHP - chr3R 24078405 intron 4EHP - chr3R_6_24075001 chr3R_24075001 RAL-304_100b 3688 chr3R 24076917 24076948 chr3R 24078384 24078394 hobo 34 1484 17.0 22.0 19.5 1.7 1477 chr3R 24076917 intron 4EHP - chr3R 24077656 intron 4EHP - chr3R 24078394 intron 4EHP - chr3R_34_24075001 chr3R_24075001 RAL-304_100b 3689 chr3R 24100432 24100485 chr3R 24100552 24100605 15 119 6.5 11.5 9.0 1.5 173 chr3R 24100432 intron 4EHP - chr3R 24100518 intron 4EHP - chr3R 24100605 intron 4EHP - chr3R_15_24100001 chr3R_24100001 RAL-304_100b 3690 chr3R 24139604 24139654 chr3R 24139714 24139723 19 106 12.0 17.5 14.8 1.2 119 chr3R 24139604 intron Npc2f + chr3R 24139664 intron Npc2f + chr3R 24139723 intron Npc2f + chr3R_19_24135001 chr3R_24135001 RAL-304_100b 3691 chr3R 24143974 24144029 chr3R 24144078 24144119 39 100 8.5 13.0 10.8 3.3 145 chr3R 24143974 intron Kal1 + chr3R 24144046 intron Kal1 + chr3R 24144119 intron Kal1 + chr3R_39_24140001 chr3R_24140001 RAL-304_100b 3692 chr3R 24199712 24199773 chr3R 24199817 24199863 60 101 16.5 17.0 16.8 3.4 151 chr3R 24199712 intron twin - chr3R 24199788 intron twin - chr3R 24199863 intron twin - chr3R_60_24195001 chr3R_24195001 RAL-304_100b 3693 chr3R 24207195 24207207 chr3R 24212296 24212308 flea 12 5101 50.0 24.0 37.0 0.3 5113 chr3R 24207195 intron twin - chr3R 24209752 intron twin - chr3R 24212308 intron twin - chr3R_12_24205001 chr3R_24205001 RAL-304_100b 3694 chr3R 24207208 24207244 chr3R 24212293 24212312 flea 45 5095 25.0 23.5 24.2 1.8 5104 chr3R 24207208 intron twin - chr3R 24209760 intron twin - chr3R 24212312 intron twin - chr3R_45_24205001 chr3R_24205001 RAL-304_100b 3695 chr3R 21907535 21907536 chr3R 24389465 24389465 10 2481930 81.5 48.0 64.8 0.2 2481930 chr3R 21907535 intergenic CG6678 + chr3R 23148500 intergenic not near genes chr3R 24389465 intron CG5768 - chr3R_10_23145001 chr3R_23145001 RAL-304_100b 3696 chr3R 24431574 24431626 chr3R 24431678 24431730 29 103 14.0 0.5 7.2 3.5 156 chr3R 24431574 intron nAChRalpha1 - chr3R 24431652 intron nAChRalpha1 - chr3R 24431730 intron nAChRalpha1 - chr3R_29_24430001 chr3R_24430001 RAL-304_100b 3697 chr3R 24433466 24433490 chr3R 24433565 24433594 18 103 8.5 16.0 12.2 1.4 128 chr3R 24433466 intron nAChRalpha1 - chr3R 24433530 intron nAChRalpha1 - chr3R 24433594 intron nAChRalpha1 - chr3R_18_24430001 chr3R_24430001 RAL-304_100b 3698 chr3R 24433493 24433505 chr3R 24433556 24433609 15 96 6.5 13.5 10.0 1.4 116 chr3R 24433493 intron nAChRalpha1 - chr3R 24433551 intron nAChRalpha1 - chr3R 24433609 intron nAChRalpha1 - chr3R_15_24430001 chr3R_24430001 RAL-304_100b 3699 chr3R 24447721 24447753 chr3R 24447833 24447865 8 112 0.0 19.0 9.5 0.8 144 chr3R 24447721 intron nAChRalpha1 - chr3R 24447793 intron nAChRalpha1 - chr3R 24447865 intron nAChRalpha1 - chr3R_8_24445001 chr3R_24445001 RAL-304_100b 3700 chr3R 24482898 24482929 chr3R 24483011 24483040 23 111 32.0 20.0 26.0 0.9 142 chr3R 24482898 intergenic not near genes chr3R 24482969 intergenic not near genes chr3R 24483040 intergenic not near genes chr3R_23_24480001 chr3R_24480001 RAL-304_100b 3701 chr3R 24493255 24493300 chr3R 24493509 24493554 BS 35 253 11.5 17.5 14.5 2.3 299 chr3R 24493255 intergenic not near genes chr3R 24493404 intergenic not near genes chr3R 24493554 intergenic not near genes chr3R_35_24490001 chr3R_24490001 RAL-304_100b 3702 chr3R 24525782 24525836 chr3R 24525887 24525935 59 100 12.5 11.5 12.0 4.5 153 chr3R 24525782 intron CG13618 + chr3R 24525858 intron CG13618 + chr3R 24525935 intron CG13618 + chr3R_59_24525001 chr3R_24525001 RAL-304_100b 3703 chr3R 24527794 24527834 chr3R 24527897 24527950 27 113 5.5 9.5 7.5 3.2 156 chr3R 24527794 intergenic CG6607 +,CG13618 + chr3R 24527872 intergenic CG6607 +,CG13618 + chr3R 24527950 intergenic CG6607 +,CG13618 + chr3R_27_24525001 chr3R_24525001 RAL-304_100b 3704 chr3R 24594652 24594667 chr3R 24594917 24594932 pogo 10 265 16.5 28.5 22.5 0.4 280 chr3R 24594652 intron mld + chr3R 24594792 intron mld + chr3R 24594932 intron mld + chr3R_10_24590001 chr3R_24590001 RAL-304_100b 3705 chr3R 24667580 24667627 chr3R 24667682 24667694 26 99 7.5 0.0 3.8 5.4 114 chr3R 24667580 intron slo + chr3R 24667637 intron slo + chr3R 24667694 intron slo + chr3R_26_24665001 chr3R_24665001 RAL-304_100b 3706 chr3R 24670163 24670171 chr3R 24670271 24670281 4 110 9.5 5.5 7.5 0.5 118 chr3R 24670163 intron slo + chr3R 24670222 intron slo + chr3R 24670281 intron slo + chr3R_4_24670001 chr3R_24670001 RAL-304_100b 3707 chr3R 24670172 24670185 chr3R 24670267 24670284 6 105 9.5 5.5 7.5 0.7 112 chr3R 24670172 intron slo + chr3R 24670228 intron slo + chr3R 24670284 intron slo + chr3R_6_24670001 chr3R_24670001 RAL-304_100b 3708 chr3R 24671194 24671254 chr3R 24671296 24671356 43 97 15.0 18.5 16.8 2.4 162 chr3R 24671194 intron slo + chr3R 24671275 intron slo + chr3R 24671356 intron slo + chr3R_43_24670001 chr3R_24670001 RAL-304_100b 3709 chr3R 24730066 24730098 chr3R 24732469 24732501 Doc 25 2401 31.0 2.5 16.8 1.4 2435 chr3R 24730066 intron tok + chr3R 24731284 intron tok + chr3R 24732501 intron tok + chr3R_25_24730001 chr3R_24730001 RAL-304_100b 3710 chr3R 24730100 24730117 chr3R 24732468 24732500 Doc 7 2377 18.5 2.5 10.5 0.6 2400 chr3R 24730100 intron tok + chr3R 24731300 intron tok + chr3R 24732500 intron tok + chr3R_7_24730001 chr3R_24730001 RAL-304_100b 3711 chr3R 24789957 24790012 chr3R 24790127 24790166 50 166 12.0 20.0 16.0 2.9 209 chr3R 24789957 intron,5` UTR Ets96B +,CG13634 - chr3R 24790062 intron,5` UTR Ets96B +,CG13634 - chr3R 24790166 intron Ets96B + chr3R_50_24790001 chr3R_24790001 RAL-304_100b 3712 chr3R 24842081 24842137 chr3R 24842187 24842227 66 107 10.5 16.0 13.2 4.6 146 chr3R 24842081 5` UTR Esp + chr3R 24842154 5` UTR Esp + chr3R 24842227 5` UTR Esp + chr3R_66_24840001 chr3R_24840001 RAL-304_100b 3713 chr3R 24893443 24893488 chr3R 24893548 24893578 29 103 5.0 6.0 5.5 4.5 135 chr3R 24893443 intron CG31121 - chr3R 24893510 intron CG31121 - chr3R 24893578 intron CG31121 - chr3R_29_24890001 chr3R_24890001 RAL-304_100b 3714 chr3R 8385092 8385095 chr3R 24910903 24910915 4 16525814 87.0 55.5 71.2 0.1 16525823 chr3R 8385092 intron CG45263 - chr3R 16648004 exon Cctgamma + chr3R 24910915 intergenic not near genes chr3R_4_16645001 chr3R_16645001 RAL-304_100b 3715 chr3R 24912458 24912512 chr3R 24912565 24912619 37 105 14.0 6.5 10.2 3.3 161 chr3R 24912458 intergenic not near genes chr3R 24912538 intergenic CR44267 + chr3R 24912619 intergenic CR44267 + chr3R_37_24910001 chr3R_24910001 RAL-304_100b 3716 chr3R 24927108 24927115 chr3R 24931924 24931931 Doc 5 4816 32.5 18.5 25.5 0.2 4823 chr3R 24927108 intergenic Trf4-2 + chr3R 24929520 intergenic not near genes chr3R 24931931 intergenic CG11771 + chr3R_5_24925001 chr3R_24925001 RAL-304_100b 3717 chr3R 24927121 24927153 chr3R 24931920 24931936 Doc 22 4809 19.5 18.0 18.8 1.1 4815 chr3R 24927121 intergenic Trf4-2 + chr3R 24929528 intergenic not near genes chr3R 24931936 intergenic CG11771 + chr3R_22_24925001 chr3R_24925001 RAL-304_100b 3718 chr3R 24973929 24973955 chr3R 24974030 24974037 15 97 27.0 12.5 19.8 0.7 108 chr3R 24973929 intergenic not near genes chr3R 24973983 intergenic not near genes chr3R 24974037 intergenic not near genes chr3R_15_24970001 chr3R_24970001 RAL-304_100b 3719 chr3R 24973956 24973976 chr3R 24974023 24974070 19 89 20.0 15.5 17.8 1.0 114 chr3R 24973956 intergenic not near genes chr3R 24974013 intergenic not near genes chr3R 24974070 intergenic not near genes chr3R_19_24970001 chr3R_24970001 RAL-304_100b 3720 chr3R 25004895 25004918 chr3R 25005003 25005026 17 108 8.0 33.5 20.8 0.8 131 chr3R 25004895 intron tnc + chr3R 25004960 intron tnc + chr3R 25005026 intron tnc + chr3R_17_25000001 chr3R_25000001 RAL-304_100b 3721 chr3R 25004919 25004922 chr3R 25004989 25005026 8 101 6.0 23.5 14.8 0.5 107 chr3R 25004919 intron tnc + chr3R 25004972 intron tnc + chr3R 25005026 intron tnc + chr3R_8_25000001 chr3R_25000001 RAL-304_100b 3722 chr3R 25050963 25051008 chr3R 25051065 25051110 48 96 16.5 12.5 14.5 3.1 147 chr3R 25050963 intron CG11791 + chr3R 25051036 intron CG11791 + chr3R 25051110 intron CG11791 + chr3R_48_25050001 chr3R_25050001 RAL-304_100b 3723 chr3R 25126018 25126052 chr3R 25126637 25126655 12 617 78.5 82.0 80.2 0.1 637 chr3R 25126018 3` UTR,exon CG42503 -,Mocs2 - chr3R 25126336 3` UTR,exon CG42503 -,Mocs2 - chr3R 25126655 3` UTR,exon CG42503 -,Mocs2 - chr3R_12_25125001 chr3R_25125001 RAL-304_100b 3724 chr3R 25136376 25136427 chr3R 25136481 25136532 13 105 8.0 3.0 5.5 2.0 156 chr3R 25136376 3` UTR Bili + chr3R 25136454 3` UTR Bili + chr3R 25136532 3` UTR Bili + chr3R_13_25135001 chr3R_25135001 RAL-304_100b 3725 chr3R 25159481 25159541 chr3R 25159594 25159650 45 110 13.0 11.5 12.2 3.4 169 chr3R 25159481 intergenic not near genes chr3R 25159566 intergenic not near genes chr3R 25159650 intergenic not near genes chr3R_45_25155001 chr3R_25155001 RAL-304_100b 3726 chr3R 25203323 25203376 chr3R 25203478 25203498 40 153 18.0 15.5 16.8 2.2 175 chr3R 25203323 intron,intron Cad96Ca -,CG13654 + chr3R 25203410 intron,intron Cad96Ca -,CG13654 + chr3R 25203498 intron,intron Cad96Ca -,CG13654 + chr3R_40_25200001 chr3R_25200001 RAL-304_100b 3727 chr3R 25235673 25235718 chr3R 25235788 25235833 14 115 10.5 6.5 8.5 1.5 160 chr3R 25235673 intergenic CG10420 - chr3R 25235753 intergenic CG10420 - chr3R 25235833 intergenic CG10420 - chr3R_14_25235001 chr3R_25235001 RAL-304_100b 3728 chr3R 25302653 25302682 chr3R 25302927 25302956 22 273 19.5 8.0 13.8 1.5 303 chr3R 25302653 exon CG31370 + chr3R 25302804 exon CG31370 + chr3R 25302956 exon CG31370 + chr3R_22_25300001 chr3R_25300001 RAL-304_100b 3729 chr3R 25302683 25302710 chr3R 25302926 25302977 32 267 9.5 7.5 8.5 3.4 294 chr3R 25302683 exon CG31370 + chr3R 25302830 exon CG31370 + chr3R 25302977 exon CG31370 + chr3R_32_25300001 chr3R_25300001 RAL-304_100b 3730 chr3R 25324366 25324389 chr3R 25328956 25328979 Doc 19 4589 11.5 32.0 21.8 0.8 4613 chr3R 25324366 exon CHKov1 - chr3R 25326672 intron CHKov1 - chr3R 25328979 exon CHKov1 - chr3R_19_25325001 chr3R_25325001 RAL-304_100b 3731 chr3R 25368449 25368502 chr3R 25368591 25368595 22 139 7.5 0.0 3.8 4.6 146 chr3R 25368449 intron Fur1 - chr3R 25368522 intron Fur1 - chr3R 25368595 intron Fur1 - chr3R_22_25365001 chr3R_25365001 RAL-304_100b 3732 chr3R 25514411 25514449 chr3R 25514517 25514555 18 104 0.5 10.5 5.5 2.8 144 chr3R 25514411 intergenic not near genes chr3R 25514483 intergenic not near genes chr3R 25514555 intergenic not near genes chr3R_18_25510001 chr3R_25510001 RAL-304_100b 3733 chr3R 25612885 25612941 chr3R 25612987 25613043 51 101 15.5 16.5 16.0 3.0 158 chr3R 25612885 intron Npl4 - chr3R 25612964 intron Npl4 - chr3R 25613043 intron Npl4 - chr3R_51_25610001 chr3R_25610001 RAL-304_100b 3734 chr3R 25661244 25661305 chr3R 25661348 25661409 61 100 14.0 7.5 10.8 5.2 165 chr3R 25661244 5` UTR Tnks - chr3R 25661326 intergenic Tnks -,CR45208 -,RASSF8 + chr3R 25661409 intergenic Tnks -,CR45208 -,RASSF8 + chr3R_61_25660001 chr3R_25660001 RAL-304_100b 3735 chr3R 25689103 25689135 chr3R 25689236 25689268 22 133 26.0 12.0 19.0 1.1 165 chr3R 25689103 intergenic not near genes chr3R 25689186 intergenic not near genes chr3R 25689268 intergenic not near genes chr3R_22_25685001 chr3R_25685001 RAL-304_100b 3736 chr3R 25689137 25689162 chr3R 25689234 25689295 27 125 16.0 11.0 13.5 1.9 158 chr3R 25689137 intergenic not near genes chr3R 25689216 intergenic not near genes chr3R 25689295 intergenic not near genes chr3R_27_25685001 chr3R_25685001 RAL-304_100b 3737 chr3R 25725808 25725856 chr3R 25734993 25735041 roo 21 9183 7.0 12.5 9.8 1.9 9233 chr3R 25725808 intron LpR2 - chr3R 25730424 intron LpR2 - chr3R 25735041 intron LpR2 - chr3R_21_25730001 chr3R_25730001 RAL-304_100b 3738 chr3R 25738609 25738620 chr3R 25738722 25738733 4 112 37.0 13.5 25.2 0.2 124 chr3R 25738609 intron LpR2 - chr3R 25738671 intron LpR2 - chr3R 25738733 intron LpR2 - chr3R_4_25735001 chr3R_25735001 RAL-304_100b 3739 chr3R 25738621 25738665 chr3R 25738719 25738768 25 106 16.0 12.0 14.0 1.7 147 chr3R 25738621 intron LpR2 - chr3R 25738694 intron LpR2 - chr3R 25738768 intron LpR2 - chr3R_25_25735001 chr3R_25735001 RAL-304_100b 3740 chr3R 25806560 25806565 chr3R 25806663 25806668 5 103 0.0 31.0 15.5 0.3 108 chr3R 25806560 intron BG642167 + chr3R 25806614 intron BG642167 + chr3R 25806668 exon BG642167 + chr3R_5_25805001 chr3R_25805001 RAL-304_100b 3741 chr3R 25831258 25831261 chr3R 25831512 25831520 5 258 0.0 0.0 0.0 5.0 262 chr3R 25831258 intergenic Mst57Da -,Mst57Db - chr3R 25831389 intergenic Mst57Da -,Mst57Db - chr3R 25831520 intergenic Mst57Da - chr3R_5_25830001 chr3R_25830001 RAL-304_100b 3742 chr3R 25832672 25832684 chr3R 25841879 25841885 roo 14 9206 31.5 26.5 29.0 0.5 9213 chr3R 25832672 exon alpha4GT2 + chr3R 25837278 intron alpha4GT2 + chr3R 25841885 exon alpha4GT2 + chr3R_14_25835001 chr3R_25835001 RAL-304_100b 3743 chr3R 25832686 25832723 chr3R 25841877 25841890 roo 62 9201 13.5 25.5 19.5 3.0 9204 chr3R 25832686 exon alpha4GT2 + chr3R 25837288 intron alpha4GT2 + chr3R 25841890 exon alpha4GT2 + chr3R_62_25835001 chr3R_25835001 RAL-304_100b 3744 chr3R 26108799 26108842 chr3R 26117407 26117415 Tirant 24 8602 27.0 2.5 14.8 1.5 8616 chr3R 26108799 5` UTR CG31324 + chr3R 26113107 intron CG31324 + chr3R 26117415 intron CG31324 + chr3R_24_26110001 chr3R_26110001 RAL-304_100b 3745 chr3R 26126525 26126570 chr3R 26126636 26126671 38 108 12.5 12.0 12.2 2.9 146 chr3R 26126525 intron CG31324 + chr3R 26126598 intron CG31324 + chr3R 26126671 intron,5` UTR CG31324 +,CG14556 + chr3R_38_26125001 chr3R_26125001 RAL-304_100b 3746 chr3R 26140018 26140023 chr3R 26140108 26140117 8 98 19.0 21.0 20.0 0.4 99 chr3R 26140018 intergenic not near genes chr3R 26140068 intergenic not near genes chr3R 26140117 intergenic not near genes chr3R_8_26140001 chr3R_26140001 RAL-304_100b 3747 chr3R 26166615 26166627 chr3R 26166733 26166745 12 118 48.5 10.5 29.5 0.4 130 chr3R 26166615 intergenic not near genes chr3R 26166680 intergenic not near genes chr3R 26166745 intergenic not near genes chr3R_12_26165001 chr3R_26165001 RAL-304_100b 3748 chr3R 26166629 26166671 chr3R 26166732 26166789 36 114 18.5 10.0 14.2 2.4 160 chr3R 26166629 intergenic not near genes chr3R 26166709 intergenic not near genes chr3R 26166789 intergenic not near genes chr3R_36_26165001 chr3R_26165001 RAL-304_100b 3749 chr3R 26204758 26204790 chr3R 26204863 26204891 6 102 0.5 28.5 14.5 0.4 133 chr3R 26204758 intron CR44320 + chr3R 26204824 intron CR44320 + chr3R 26204891 intron CR44320 + chr3R_6_26200001 chr3R_26200001 RAL-304_100b 3750 chr3R 26247234 26247246 chr3R 26247394 26247398 7 159 19.5 18.0 18.8 0.4 164 chr3R 26247234 intron CR42745 + chr3R 26247316 intron CR42745 + chr3R 26247398 intron CR42745 + chr3R_7_26245001 chr3R_26245001 RAL-304_100b 3751 chr3R 26247247 26247272 chr3R 26247393 26247434 10 152 12.5 18.0 15.2 0.6 187 chr3R 26247247 intron CR42745 + chr3R 26247340 intron CR42745 + chr3R 26247434 intron CR42745 + chr3R_10_26245001 chr3R_26245001 RAL-304_100b 3752 chr3R 26247273 26247279 chr3R 26247390 26247432 14 137 11.0 16.5 13.8 0.9 159 chr3R 26247273 intron CR42745 + chr3R 26247352 intron CR42745 + chr3R 26247432 intron CR42745 + chr3R_14_26245001 chr3R_26245001 RAL-304_100b 3753 chr3R 26292086 26292094 chr3R 26292191 26292199 9 105 33.5 20.0 26.8 0.3 113 chr3R 26292086 intergenic not near genes chr3R 26292142 intergenic not near genes chr3R 26292199 intergenic not near genes chr3R_9_26290001 chr3R_26290001 RAL-304_100b 3754 chr3R 26292098 26292142 chr3R 26292183 26292192 31 102 14.5 18.0 16.2 1.8 94 chr3R 26292098 intergenic not near genes chr3R 26292145 intergenic not near genes chr3R 26292192 intergenic not near genes chr3R_31_26290001 chr3R_26290001 RAL-304_100b 3755 chr3R 26301812 26301856 chr3R 26302233 26302277 7 420 46.5 56.5 51.5 0.1 465 chr3R 26301812 intergenic not near genes chr3R 26302044 intergenic not near genes chr3R 26302277 intergenic not near genes chr3R_7_26300001 chr3R_26300001 RAL-304_100b 3756 chr3R 11004110 11004130 chr3R 26312888 26312892 5 15308767 35.5 57.5 46.5 0.1 15308782 chr3R 11004110 intron CG34114 + chr3R 18658501 intron CG31224 - chr3R 26312892 intergenic not near genes chr3R_5_18655001 chr3R_18655001 RAL-304_100b 3757 chr3R 26349239 26349249 chr3R 26349363 26349373 7 124 18.5 0.0 9.2 0.7 134 chr3R 26349239 intron CG33970 + chr3R 26349306 intron CG33970 + chr3R 26349373 intron CG33970 + chr3R_7_26345001 chr3R_26345001 RAL-304_100b 3758 chr3R 26376301 26376338 chr3R 26385486 26385516 roo 33 9182 19.0 10.5 14.8 2.1 9215 chr3R 26376301 intergenic not near genes chr3R 26380908 intergenic not near genes chr3R 26385516 intergenic not near genes chr3R_33_26380001 chr3R_26380001 RAL-304_100b 3759 chr3R 26376339 26376357 chr3R 26385483 26385532 roo 15 9175 11.0 9.0 10.0 1.4 9193 chr3R 26376339 intergenic not near genes chr3R 26380936 intergenic not near genes chr3R 26385532 intergenic not near genes chr3R_15_26380001 chr3R_26380001 RAL-304_100b 3760 chr3R 26480581 26480632 chr3R 26480693 26480699 15 101 18.0 16.5 17.2 0.8 118 chr3R 26480581 intron plum - chr3R 26480640 intron plum - chr3R 26480699 intron plum - chr3R_15_26480001 chr3R_26480001 RAL-304_100b 3761 chr3R 26485866 26485924 chr3R 26486000 26486058 39 131 21.0 9.0 15.0 2.4 192 chr3R 26485866 intron plum - chr3R 26485962 intron plum - chr3R 26486058 intron plum - chr3R_39_26485001 chr3R_26485001 RAL-304_100b 3762 chr3R 26491349 26491407 chr3R 26491470 26491498 48 115 18.5 14.5 16.5 2.7 149 chr3R 26491349 intron plum - chr3R 26491424 intron plum - chr3R 26491498 intron plum - chr3R_48_26490001 chr3R_26490001 RAL-304_100b 3763 chr3R 26510496 26510535 chr3R 26519576 26519615 roo 29 9078 8.0 14.0 11.0 2.4 9119 chr3R 26510496 intron plum - chr3R 26515056 intron plum - chr3R 26519615 intron,5` UTR plum -,CR45226 + chr3R_29_26515001 chr3R_26515001 RAL-304_100b 3764 chr3R 26558300 26558359 chr3R 26565638 26565671 Stalker4 45 7329 10.0 12.0 11.0 3.8 7371 chr3R 26558300 intron scrib + chr3R 26561986 intron scrib + chr3R 26565671 intron scrib + chr3R_45_26560001 chr3R_26560001 RAL-304_100b 3765 chr3R 26641611 26641664 chr3R 26641723 26641776 49 104 15.0 16.0 15.5 3.0 165 chr3R 26641611 intergenic not near genes chr3R 26641694 intergenic not near genes chr3R 26641776 intergenic not near genes chr3R_49_26640001 chr3R_26640001 RAL-304_100b 3766 chr3R 26642707 26642757 chr3R 26643125 26643149 jockey 17 416 16.0 0.0 8.0 1.9 442 chr3R 26642707 intergenic not near genes chr3R 26642928 intergenic not near genes chr3R 26643149 intergenic not near genes chr3R_17_26640001 chr3R_26640001 RAL-304_100b 3767 chr3R 26652246 26652305 chr3R 26652358 26652401 56 105 9.0 9.5 9.2 5.5 155 chr3R 26652246 intron beat-VII - chr3R 26652324 intron beat-VII - chr3R 26652401 intron beat-VII - chr3R_56_26650001 chr3R_26650001 RAL-304_100b 3768 chr3R 26656621 26656654 chr3R 26656739 26656791 14 121 7.0 7.5 7.2 1.7 170 chr3R 26656621 intron,exon beat-VII -,Tb + chr3R 26656706 intron,exon beat-VII -,Tb + chr3R 26656791 intron,exon beat-VII -,Tb + chr3R_14_26655001 chr3R_26655001 RAL-304_100b 3769 chr3R 21907534 21907534 chr3R 26659332 26659337 5 4751800 82.0 88.0 85.0 0.1 4751803 chr3R 21907534 intergenic CG6678 + chr3R 24283436 intergenic CR45662 - chr3R 26659337 intron beat-VII - chr3R_5_24280001 chr3R_24280001 RAL-304_100b 3770 chr3R 26660406 26660465 chr3R 26660514 26660573 61 102 18.5 20.5 19.5 3.0 167 chr3R 26660406 intron beat-VII - chr3R 26660490 intron beat-VII - chr3R 26660573 intron beat-VII - chr3R_61_26660001 chr3R_26660001 RAL-304_100b 3771 chr3R 26674561 26674616 chr3R 26674668 26674712 67 107 12.5 13.0 12.8 4.9 151 chr3R 26674561 intron beat-VII - chr3R 26674636 intron beat-VII - chr3R 26674712 intron beat-VII - chr3R_67_26670001 chr3R_26670001 RAL-304_100b 3772 chr3R 26735498 26735555 chr3R 26735616 26735673 58 114 11.5 19.5 15.5 3.5 175 chr3R 26735498 3` UTR CG6403 - chr3R 26735586 3` UTR CG6403 - chr3R 26735673 exon CG6403 - chr3R_58_26735001 chr3R_26735001 RAL-304_100b 3773 chr3R 26770217 26770271 chr3R 26770319 26770373 44 101 12.5 12.5 12.5 3.3 156 chr3R 26770217 intergenic CR45563 + chr3R 26770295 intergenic CR45563 + chr3R 26770373 intergenic not near genes chr3R_44_26770001 chr3R_26770001 RAL-304_100b 3774 chr3R 26810526 26810586 chr3R 26811036 26811096 roo 38 509 13.5 11.5 12.5 2.8 570 chr3R 26810526 intron Tl + chr3R 26810811 intron Tl + chr3R 26811096 intron Tl + chr3R_38_26810001 chr3R_26810001 RAL-304_100b 3775 chr3R 26818786 26818823 chr3R 26819239 26819249 15 446 24.5 9.5 17.0 0.8 463 chr3R 26818786 intron Tl + chr3R 26819018 intron Tl + chr3R 26819249 intron Tl + chr3R_15_26815001 chr3R_26815001 RAL-304_100b 3776 chr3R 26888181 26888204 chr3R 26888283 26888306 22 101 28.5 43.5 36.0 0.6 125 chr3R 26888181 intron T48 + chr3R 26888244 intron T48 + chr3R 26888306 intron T48 + chr3R_22_26885001 chr3R_26885001 RAL-304_100b 3777 chr3R 26888205 26888215 chr3R 26888281 26888282 7 85 29.5 42.0 35.8 0.2 77 chr3R 26888205 intron T48 + chr3R 26888244 intron T48 + chr3R 26888282 intron T48 + chr3R_7_26885001 chr3R_26885001 RAL-304_100b 3778 chr3R 26898612 26898633 chr3R 26899011 26899032 12 399 13.0 8.0 10.5 1.0 420 chr3R 26898612 intron T48 + chr3R 26898822 intron T48 + chr3R 26899032 intron T48 + chr3R_12_26895001 chr3R_26895001 RAL-304_100b 3779 chr3R 27007381 27007429 chr3R 27016541 27016572 roo 27 9153 13.5 8.0 10.8 2.3 9191 chr3R 27007381 intron RYa-R + chr3R 27011976 intron RYa-R + chr3R 27016572 intron RYa-R + chr3R_27_27010001 chr3R_27010001 RAL-304_100b 3780 chr3R 27027655 27027705 chr3R 27027764 27027812 23 107 13.0 7.5 10.2 2.1 157 chr3R 27027655 intron RYa-R + chr3R 27027734 intron RYa-R + chr3R 27027812 intron RYa-R + chr3R_23_27025001 chr3R_27025001 RAL-304_100b 3781 chr3R 27028700 27028756 chr3R 27028804 27028860 36 99 11.0 9.0 10.0 3.3 160 chr3R 27028700 intron RYa-R + chr3R 27028780 intron RYa-R + chr3R 27028860 intron RYa-R + chr3R_36_27025001 chr3R_27025001 RAL-304_100b 3782 chr3R 27051635 27051695 chr3R 27051751 27051809 30 112 6.0 0.0 3.0 7.5 174 chr3R 27051635 intron RYa-R + chr3R 27051722 intron RYa-R + chr3R 27051809 intron RYa-R + chr3R_30_27050001 chr3R_27050001 RAL-304_100b 3783 chr3R 27077076 27077112 chr3R 27077179 27077217 17 101 21.0 16.0 18.5 0.9 141 chr3R 27077076 intron CG14257 + chr3R 27077146 intron CG14257 + chr3R 27077217 intron CG14257 + chr3R_17_27075001 chr3R_27075001 RAL-304_100b 3784 chr3R 27077115 27077129 chr3R 27077178 27077224 11 83 15.0 16.0 15.5 0.7 109 chr3R 27077115 intron CG14257 + chr3R 27077170 intron CG14257 + chr3R 27077224 intron CG14257 + chr3R_11_27075001 chr3R_27075001 RAL-304_100b 3785 chr3R 27140489 27140546 chr3R 27148123 27148166 412 36 7630 17.0 10.5 13.8 2.4 7677 chr3R 27140489 intron CG6051 - chr3R 27144328 intron CG6051 - chr3R 27148166 intron CG6051 - chr3R_36_27140001 chr3R_27140001 RAL-304_100b 3786 chr3R 27192666 27192676 chr3R 27192763 27192764 6 93 43.5 22.0 32.8 0.2 98 chr3R 27192666 intron Ser - chr3R 27192715 intron Ser - chr3R 27192764 intron Ser - chr3R_6_27190001 chr3R_27190001 RAL-304_100b 3787 chr3R 27195551 27195609 chr3R 27195662 27195706 52 107 16.0 20.5 18.2 2.7 155 chr3R 27195551 intergenic not near genes chr3R 27195628 intergenic not near genes chr3R 27195706 intergenic not near genes chr3R_52_27195001 chr3R_27195001 RAL-304_100b 3788 chr3R 27225559 27225612 chr3R 27225675 27225728 34 115 18.5 15.0 16.8 1.9 169 chr3R 27225559 intergenic not near genes chr3R 27225644 intergenic not near genes chr3R 27225728 intergenic not near genes chr3R_34_27225001 chr3R_27225001 RAL-304_100b 3789 chr3R 27292263 27292268 chr3R 27292393 27292405 5 132 41.0 20.0 30.5 0.2 142 chr3R 27292263 intergenic CG3348 - chr3R 27292334 intergenic CG3348 - chr3R 27292405 intergenic CG3348 - chr3R_5_27290001 chr3R_27290001 RAL-304_100b 3790 chr3R 27292270 27292307 chr3R 27292390 27292444 56 129 16.0 18.5 17.2 3.1 174 chr3R 27292270 intergenic CG3348 - chr3R 27292357 intergenic CG3348 - chr3R 27292444 intergenic CG3348 - chr3R_56_27290001 chr3R_27290001 RAL-304_100b 3791 chr3R 27315968 27316013 chr3R 27316069 27316098 45 94 24.5 17.5 21.0 2.0 130 chr3R 27315968 intron CG3339 - chr3R 27316033 intron CG3339 - chr3R 27316098 exon CG3339 - chr3R_45_27315001 chr3R_27315001 RAL-304_100b 3792 chr3R 27329449 27329502 chr3R 27329551 27329603 26 101 12.0 12.5 12.2 2.0 154 chr3R 27329449 intergenic CG3330 - chr3R 27329526 intergenic CG3330 - chr3R 27329603 intergenic CG3330 - chr3R_26_27325001 chr3R_27325001 RAL-304_100b 3793 chr3R 27342769 27342786 chr3R 27351375 27351392 Tirant 7 8606 33.0 10.5 21.8 0.3 8623 chr3R 27342769 intron CG42534 + chr3R 27347080 intron CG42534 + chr3R 27351392 intron CG42534 + chr3R_7_27345001 chr3R_27345001 RAL-304_100b 3794 chr3R 27342787 27342825 chr3R 27351373 27351431 Tirant 32 8602 14.0 10.0 12.0 2.5 8644 chr3R 27342787 intron CG42534 + chr3R 27347109 intron CG42534 + chr3R 27351431 intron CG42534 + chr3R_32_27345001 chr3R_27345001 RAL-304_100b 3795 chr3R 27371540 27371564 chr3R 27371648 27371661 13 104 33.5 42.0 37.8 0.3 121 chr3R 27371540 intergenic CG42534 + chr3R 27371600 intergenic CG42534 + chr3R 27371661 intergenic CG42534 + chr3R_13_27370001 chr3R_27370001 RAL-304_100b 3796 chr3R 27377446 27377502 chr3R 27377559 27377615 49 105 18.5 20.5 19.5 2.4 169 chr3R 27377446 3` UTR side - chr3R 27377530 3` UTR side - chr3R 27377615 3` UTR side - chr3R_49_27375001 chr3R_27375001 RAL-304_100b 3797 chr3R 27398546 27398602 chr3R 27398647 27398704 14 96 1.0 8.0 4.5 2.5 158 chr3R 27398546 intron side - chr3R 27398625 intron side - chr3R 27398704 intron side - chr3R_14_27395001 chr3R_27395001 RAL-304_100b 3798 chr3R 27483097 27483140 chr3R 27483237 27483286 41 146 16.0 15.0 15.5 2.5 189 chr3R 27483097 intergenic Cyp6a18 + chr3R 27483192 intergenic Cyp6a18 + chr3R 27483286 intergenic Cyp6a18 + chr3R_41_27480001 chr3R_27480001 RAL-304_100b 3799 chr3R 27492358 27492410 chr3R 27492466 27492497 31 107 10.0 0.5 5.2 5.0 139 chr3R 27492358 intergenic not near genes chr3R 27492428 intergenic not near genes chr3R 27492497 intergenic not near genes chr3R_31_27490001 chr3R_27490001 RAL-304_100b 3800 chr3R 27496566 27496604 chr3R 27496696 27496734 55 122 21.5 18.5 20.0 2.6 168 chr3R 27496566 intergenic not near genes chr3R 27496650 intergenic not near genes chr3R 27496734 intergenic not near genes chr3R_55_27495001 chr3R_27495001 RAL-304_100b 3801 chr3R 27517407 27517463 chr3R 27517537 27517544 60 127 11.5 13.5 12.5 4.4 137 chr3R 27517407 intergenic CG13972 - chr3R 27517476 intergenic CG13972 - chr3R 27517544 intergenic CG13972 - chr3R_60_27515001 chr3R_27515001 RAL-304_100b 3802 chr3R 27521140 27521183 chr3R 27530374 27530417 roo 20 9232 13.0 15.5 14.2 1.3 9277 chr3R 27521140 intron CG12885 + chr3R 27525778 intron CG12885 + chr3R 27530417 intron CG12885 + chr3R_20_27525001 chr3R_27525001 RAL-304_100b 3803 chr3R 27535756 27535815 chr3R 27535879 27535888 47 102 11.0 11.0 11.0 3.9 132 chr3R 27535756 intergenic CR44289 - chr3R 27535822 intergenic CR44289 - chr3R 27535888 3` UTR CR44289 - chr3R_47_27535001 chr3R_27535001 RAL-304_100b 3804 chr3R 27627060 27627120 chr3R 27627187 27627247 78 120 15.5 10.5 13.0 5.6 187 chr3R 27627060 intron Tusp + chr3R 27627154 intron Tusp + chr3R 27627247 intron Tusp + chr3R_78_27625001 chr3R_27625001 RAL-304_100b 3805 chr3R 27634077 27634103 chr3R 27634205 27634231 27 126 36.5 20.0 28.2 0.9 154 chr3R 27634077 3` UTR Tusp + chr3R 27634154 3` UTR Tusp + chr3R 27634231 3` UTR Tusp + chr3R_27_27630001 chr3R_27630001 RAL-304_100b 3806 chr3R 27634105 27634131 chr3R 27634203 27634239 30 121 18.5 18.5 18.5 1.5 134 chr3R 27634105 3` UTR Tusp + chr3R 27634172 3` UTR Tusp + chr3R 27634239 3` UTR Tusp + chr3R_30_27630001 chr3R_27630001 RAL-304_100b 3807 chr3R 27643979 27644001 chr3R 27644095 27644115 18 114 13.5 15.0 14.2 1.2 136 chr3R 27643979 intron tau - chr3R 27644047 intron tau - chr3R 27644115 intron tau - chr3R_18_27640001 chr3R_27640001 RAL-304_100b 3808 chr3R 27648562 27648861 chr3R 27648670 27648963 46 100 26.5 0.0 13.2 3.2 401 chr3R 27648562 intron tau - chr3R 27648762 intron tau - chr3R 27648963 intron tau - chr3R_46_27645001 chr3R_27645001 RAL-304_100b 3809 chr3R 27648866 27648870 chr3R 27648941 27648965 5 90 18.5 25.5 22.0 0.2 99 chr3R 27648866 intron tau - chr3R 27648916 intron tau - chr3R 27648965 intron tau - chr3R_5_27645001 chr3R_27645001 RAL-304_100b 3810 chr3R 27706753 27706801 chr3R 27706855 27706903 25 98 15.5 10.5 13.0 1.8 150 chr3R 27706753 intergenic CG12428 -,CG12877 + chr3R 27706828 intergenic CG12428 -,CG12877 + chr3R 27706903 intergenic CG12428 -,CG12877 + chr3R_25_27705001 chr3R_27705001 RAL-304_100b 3811 chr3R 27725546 27725599 chr3R 27731011 27731053 I-element 18 5466 15.5 0.0 7.8 2.0 5507 chr3R 27725546 intergenic not near genes chr3R 27728300 intergenic not near genes chr3R 27731053 intergenic not near genes chr3R_18_27725001 chr3R_27725001 RAL-304_100b 3812 chr3R 27779243 27779287 chr3R 27779348 27779392 40 98 13.5 37.0 25.2 1.5 149 chr3R 27779243 exon CG34353 - chr3R 27779318 intron CG34353 - chr3R 27779392 intron CG34353 - chr3R_40_27775001 chr3R_27775001 RAL-304_100b 3813 chr3R 27791641 27791648 chr3R 27794792 27794813 Rt1c 5 3157 34.0 30.0 32.0 0.2 3172 chr3R 27791641 intron CG34353 - chr3R 27793227 intron CG34353 - chr3R 27794813 intron CG34353 - chr3R_5_27790001 chr3R_27790001 RAL-304_100b 3814 chr3R 27799911 27799964 chr3R 27800018 27800071 46 104 7.0 12.5 9.8 4.3 160 chr3R 27799911 intron CG34353 - chr3R 27799991 intron CG34353 - chr3R 27800071 intron CG34353 - chr3R_46_27795001 chr3R_27795001 RAL-304_100b 3815 chr3R 27841086 27841139 chr3R 27841187 27841245 58 100 17.0 18.5 17.8 3.1 159 chr3R 27841086 intron CG34353 - chr3R 27841166 intron CG34353 - chr3R 27841245 intron CG34353 - chr3R_58_27840001 chr3R_27840001 RAL-304_100b 3816 chr3R 27856738 27856788 chr3R 27858240 27858296 hopper2 45 1503 14.5 13.5 14.0 3.0 1558 chr3R 27856738 intron CG34353 - chr3R 27857517 intron CG34353 - chr3R 27858296 intron CG34353 - chr3R_45_27855001 chr3R_27855001 RAL-304_100b 3817 chr3R 27862927 27862944 chr3R 27868258 27868263 Transpac 5 5328 0.5 11.0 5.8 0.7 5336 chr3R 27862927 intron CG34353 - chr3R 27865595 intron CG34353 - chr3R 27868263 intron CG34353 - chr3R_5_27865001 chr3R_27865001 RAL-304_100b 3818 chr3R 27862957 27862984 chr3R 27868288 27868314 Transpac 4 5328 0.5 29.5 15.0 0.2 5357 chr3R 27862957 intron CG34353 - chr3R 27865636 intron CG34353 - chr3R 27868314 intron CG34353 - chr3R_4_27865001 chr3R_27865001 RAL-304_100b 3819 chr3R 27875674 27875729 chr3R 27882754 27882809 297 32 7078 12.0 14.5 13.2 2.3 7135 chr3R 27875674 intron CG34353 - chr3R 27879242 intron CG34353 - chr3R 27882809 intron CG34353 - chr3R_32_27875001 chr3R_27875001 RAL-304_100b 3820 chr3R 27970811 27970821 chr3R 27970926 27970936 4 115 26.0 11.5 18.8 0.2 125 chr3R 27970811 intron betaTub97EF - chr3R 27970874 intron betaTub97EF - chr3R 27970936 intron betaTub97EF - chr3R_4_27970001 chr3R_27970001 RAL-304_100b 3821 chr3R 27973829 27973882 chr3R 27973935 27973988 49 104 8.0 16.0 12.0 3.8 159 chr3R 27973829 intron betaTub97EF - chr3R 27973908 intron betaTub97EF - chr3R 27973988 intron betaTub97EF - chr3R_49_27970001 chr3R_27970001 RAL-304_100b 3822 chr3R 28068476 28068525 chr3R 28073943 28073992 I-element 30 5464 0.5 16.5 8.5 3.2 5516 chr3R 28068476 intron CG34362 + chr3R 28071234 intron CG34362 + chr3R 28073992 intron CG34362 + chr3R_30_28070001 chr3R_28070001 RAL-304_100b 3823 chr3R 28118830 28118880 chr3R 28118936 28118986 39 101 13.5 14.0 13.8 2.6 156 chr3R 28118830 intergenic not near genes chr3R 28118908 intergenic not near genes chr3R 28118986 intergenic not near genes chr3R_39_28115001 chr3R_28115001 RAL-304_100b 3824 chr3R 28137666 28137676 chr3R 28137771 28137781 11 105 29.5 19.0 24.2 0.4 115 chr3R 28137666 intergenic not near genes chr3R 28137724 intergenic not near genes chr3R 28137781 intergenic not near genes chr3R_11_28135001 chr3R_28135001 RAL-304_100b 3825 chr3R 28137677 28137720 chr3R 28137765 28137786 42 100 15.5 18.5 17.0 2.3 109 chr3R 28137677 intergenic not near genes chr3R 28137732 intergenic not near genes chr3R 28137786 intergenic not near genes chr3R_42_28135001 chr3R_28135001 RAL-304_100b 3826 chr3R 28173647 28173700 chr3R 28181102 28181155 mdg1 48 7454 13.0 15.5 14.2 3.2 7508 chr3R 28173647 intron CG34354 + chr3R 28177401 intron CG34354 + chr3R 28181155 intron CG34354 + chr3R_48_28175001 chr3R_28175001 RAL-304_100b 3827 chr3R 28215792 28215795 chr3R 28215894 28215897 5 101 41.5 19.5 30.5 0.2 105 chr3R 28215792 intron CG34354 + chr3R 28215844 intron CG34354 + chr3R 28215897 intron CG34354 + chr3R_5_28215001 chr3R_28215001 RAL-304_100b 3828 chr3R 28215799 28215850 chr3R 28215891 28215913 49 94 19.5 17.0 18.2 2.6 114 chr3R 28215799 intron CG34354 + chr3R 28215856 intron CG34354 + chr3R 28215913 intron CG34354 + chr3R_49_28215001 chr3R_28215001 RAL-304_100b 3829 chr3R 28253316 28253335 chr3R 28255851 28255860 jockey 11 2532 31.0 19.0 25.0 0.4 2544 chr3R 28253316 intergenic not near genes chr3R 28254588 intergenic not near genes chr3R 28255860 intergenic not near genes chr3R_11_28250001 chr3R_28250001 RAL-304_100b 3830 chr3R 28253337 28253368 chr3R 28255842 28255903 jockey 44 2531 22.5 16.5 19.5 2.1 2566 chr3R 28253337 intergenic not near genes chr3R 28254620 intergenic not near genes chr3R 28255903 intergenic not near genes chr3R_44_28250001 chr3R_28250001 RAL-304_100b 3831 chr3R 28262649 28262682 chr3R 28262750 28262783 31 99 17.0 24.0 20.5 1.4 134 chr3R 28262649 intergenic CG43125 - chr3R 28262716 intergenic CG43125 - chr3R 28262783 exon CG43125 - chr3R_31_28260001 chr3R_28260001 RAL-304_100b 3832 chr3R 28302082 28302135 chr3R 28302545 28302564 jockey 39 458 12.5 17.0 14.8 2.5 482 chr3R 28302082 intergenic not near genes chr3R 28302323 intergenic not near genes chr3R 28302564 intergenic not near genes chr3R_39_28300001 chr3R_28300001 RAL-304_100b 3833 chr3R 28303779 28303807 chr3R 28303918 28303946 24 135 34.5 13.5 24.0 1.0 167 chr3R 28303779 exon CG12516 - chr3R 28303862 exon CG12516 - chr3R 28303946 exon CG12516 - chr3R_24_28300001 chr3R_28300001 RAL-304_100b 3834 chr3R 28303811 28303837 chr3R 28303917 28303976 33 126 15.0 13.0 14.0 2.2 165 chr3R 28303811 exon CG12516 - chr3R 28303894 exon CG12516 - chr3R 28303976 exon CG12516 - chr3R_33_28300001 chr3R_28300001 RAL-304_100b 3835 chr3R 28374469 28374518 chr3R 28374573 28374595 36 100 15.5 8.0 11.8 2.8 126 chr3R 28374469 intergenic not near genes chr3R 28374532 intergenic not near genes chr3R 28374595 intergenic not near genes chr3R_36_28370001 chr3R_28370001 RAL-304_100b 3836 chr3R 28382126 28382172 chr3R 28382234 28382280 42 106 18.5 18.0 18.2 2.2 154 chr3R 28382126 intergenic not near genes chr3R 28382203 intergenic not near genes chr3R 28382280 intergenic not near genes chr3R_42_28380001 chr3R_28380001 RAL-304_100b 3837 chr3R 28426491 28426503 chr3R 28426595 28426614 14 110 0.0 32.0 16.0 0.8 123 chr3R 28426491 intron beat-VI + chr3R 28426552 intron beat-VI + chr3R 28426614 intron beat-VI + chr3R_14_28425001 chr3R_28425001 RAL-304_100b 3838 chr3R 28594074 28594129 chr3R 28594178 28594233 33 101 7.0 14.0 10.5 2.9 159 chr3R 28594074 5` UTR CR43440 + chr3R 28594154 5` UTR CR43440 + chr3R 28594233 5` UTR CR43440 + chr3R_33_28590001 chr3R_28590001 RAL-304_100b 3839 chr3R 28616785 28616788 chr3R 28616905 28616908 4 120 47.5 19.0 33.2 0.1 123 chr3R 28616785 intron CG10011 - chr3R 28616846 intron CG10011 - chr3R 28616908 intron CG10011 - chr3R_4_28615001 chr3R_28615001 RAL-304_100b 3840 chr3R 28653597 28653652 chr3R 28653829 28653879 60 228 14.5 21.0 17.8 3.2 282 chr3R 28653597 intergenic not near genes chr3R 28653738 intergenic not near genes chr3R 28653879 intergenic not near genes chr3R_60_28650001 chr3R_28650001 RAL-304_100b 3841 chr3R 28742460 28742514 chr3R 28742561 28742600 42 97 15.0 12.5 13.8 2.8 140 chr3R 28742460 intron AstA-R2 - chr3R 28742530 intron AstA-R2 - chr3R 28742600 intron AstA-R2 - chr3R_42_28740001 chr3R_28740001 RAL-304_100b 3842 chr3R 28758261 28758273 chr3R 28763903 28763915 roo 6 5642 27.5 0.0 13.8 0.4 5654 chr3R 28758261 intergenic aqrs - chr3R 28761088 intergenic not near genes chr3R 28763915 intergenic not near genes chr3R_6_28760001 chr3R_28760001 RAL-304_100b 3843 chr3R 28758275 28758278 chr3R 28763901 28763920 roo 7 5639 25.5 0.0 12.8 0.5 5645 chr3R 28758275 intergenic aqrs - chr3R 28761098 intergenic not near genes chr3R 28763920 intergenic not near genes chr3R_7_28760001 chr3R_28760001 RAL-304_100b 3844 chr3R 28758300 28758312 chr3R 28771331 28771344 Stalker4 7 13032 11.0 5.0 8.0 0.8 13044 chr3R 28758300 intergenic aqrs - chr3R 28764822 intergenic not near genes chr3R 28771344 intergenic not near genes chr3R_7_28760001 chr3R_28760001 RAL-304_100b 3845 chr3R 28758315 28758319 chr3R 28771347 28771351 Stalker4 6 13032 9.0 7.5 8.2 0.7 13036 chr3R 28758315 intergenic aqrs - chr3R 28764833 intergenic not near genes chr3R 28771351 intergenic not near genes chr3R_6_28760001 chr3R_28760001 RAL-304_100b 3846 chr3R 28792848 28792854 chr3R 28797968 28797974 jockey 5 5120 47.0 21.5 34.2 0.1 5126 chr3R 28792848 intergenic not near genes chr3R 28795411 intergenic not near genes chr3R 28797974 intergenic not near genes chr3R_5_28795001 chr3R_28795001 RAL-304_100b 3847 chr3R 28792857 28792865 chr3R 28797966 28797985 jockey 8 5116 42.0 20.0 31.0 0.2 5128 chr3R 28792857 intergenic not near genes chr3R 28795421 intergenic not near genes chr3R 28797985 intergenic not near genes chr3R_8_28795001 chr3R_28795001 RAL-304_100b 3848 chr3R 28792867 28792898 chr3R 28797964 28798018 jockey 41 5111 25.0 18.5 21.8 1.8 5151 chr3R 28792867 intergenic not near genes chr3R 28795442 intergenic not near genes chr3R 28798018 intergenic not near genes chr3R_41_28795001 chr3R_28795001 RAL-304_100b 3849 chr3R 28792899 28792902 chr3R 28797962 28797992 jockey 5 5103 23.5 17.0 20.2 0.2 5093 chr3R 28792899 intergenic not near genes chr3R 28795446 intergenic not near genes chr3R 28797992 intergenic not near genes chr3R_5_28795001 chr3R_28795001 RAL-304_100b 3850 chr3R 28804524 28804578 chr3R 28804650 28804704 36 123 10.5 14.5 12.5 2.7 180 chr3R 28804524 intergenic not near genes chr3R 28804614 intergenic not near genes chr3R 28804704 intergenic not near genes chr3R_36_28800001 chr3R_28800001 RAL-304_100b 3851 chr3R 28830868 28830922 chr3R 28830966 28831025 24 98 13.5 13.0 13.2 1.7 157 chr3R 28830868 intron WASp - chr3R 28830946 intron WASp - chr3R 28831025 intron WASp - chr3R_24_28830001 chr3R_28830001 RAL-304_100b 3852 chr3R 21907534 21907536 chr3R 28831799 28831801 55 6924266 81.5 100.5 91.0 0.6 6924267 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831801 intron WASp - chr3R_55_25365001 chr3R_25365001 RAL-304_100b 3853 chr3R 21907534 21907536 chr3R 28831802 28831802 66 6924267 81.5 101.0 91.2 0.7 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_66_25365001 chr3R_25365001 RAL-304_100b 3854 chr3R 28870597 28870650 chr3R 28870705 28870758 43 106 8.0 11.0 9.5 4.1 161 chr3R 28870597 intergenic CG33203 -,spg + chr3R 28870678 3` UTR CG33203 - chr3R 28870758 3` UTR CG33203 - chr3R_43_28870001 chr3R_28870001 RAL-304_100b 3855 chr3R 28882902 28882946 chr3R 28883042 28883086 21 140 12.5 3.5 8.0 2.3 184 chr3R 28882902 intron,exon CG33203 -,CG14527 + chr3R 28882994 intron CG33203 - chr3R 28883086 intron CG33203 - chr3R_21_28880001 chr3R_28880001 RAL-304_100b 3856 chr3R 28892321 28892343 chr3R 28892402 28892429 33 96 34.0 21.0 27.5 1.2 108 chr3R 28892321 intron Doa + chr3R 28892375 intron Doa + chr3R 28892429 intron Doa + chr3R_33_28890001 chr3R_28890001 RAL-304_100b 3857 chr3R 28892345 28892364 chr3R 28892400 28892440 26 82 28.0 22.5 25.2 1.0 95 chr3R 28892345 intron Doa + chr3R 28892392 intron Doa + chr3R 28892440 intron Doa + chr3R_26_28890001 chr3R_28890001 RAL-304_100b 3858 chr3R 28985043 28985092 chr3R 28985170 28985221 24 128 7.0 6.5 6.8 3.1 178 chr3R 28985043 intergenic not near genes chr3R 28985132 intergenic not near genes chr3R 28985221 intergenic not near genes chr3R_24_28985001 chr3R_28985001 RAL-304_100b 3859 chr3R 28988983 28989018 chr3R 28989087 28989122 16 103 0.5 12.5 6.5 2.1 139 chr3R 28988983 intergenic not near genes chr3R 28989052 intergenic not near genes chr3R 28989122 intergenic not near genes chr3R_16_28985001 chr3R_28985001 RAL-304_100b 3860 chr3R 21907534 21907536 chr3R 29013339 29013339 25 7105804 81.5 74.0 77.8 0.3 7105805 chr3R 21907534 intergenic CG6678 + chr3R 25460436 intron Fur1 - chr3R 29013339 intron wat - chr3R_25_25460001 chr3R_25460001 RAL-304_100b 3861 chr3R 21907534 21907536 chr3R 29013340 29013340 52 7105805 81.5 74.5 78.0 0.7 7105806 chr3R 21907534 intergenic CG6678 + chr3R 25460437 intron Fur1 - chr3R 29013340 intron wat - chr3R_52_25460001 chr3R_25460001 RAL-304_100b 3862 chr3R 29032719 29032772 chr3R 29032821 29032857 37 97 8.5 10.5 9.5 3.5 138 chr3R 29032719 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R 29032788 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R 29032857 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R_37_29030001 chr3R_29030001 RAL-304_100b 3863 chr3R 29067591 29067639 chr3R 29067757 29067800 29 169 22.5 0.0 11.2 2.4 209 chr3R 29067591 intron CG11873 + chr3R 29067696 intron CG11873 + chr3R 29067800 intron CG11873 + chr3R_29_29065001 chr3R_29065001 RAL-304_100b 3864 chr3R 29070029 29070080 chr3R 29070135 29070186 32 104 13.5 12.5 13.0 2.3 157 chr3R 29070029 intron CG11873 + chr3R 29070108 intron CG11873 + chr3R 29070186 intron CG11873 + chr3R_32_29070001 chr3R_29070001 RAL-304_100b 3865 chr3R 29079354 29079373 chr3R 29080751 29080770 NOF 18 1396 34.0 16.5 25.2 0.7 1416 chr3R 29079354 intron CG11873 + chr3R 29080062 intron CG11873 + chr3R 29080770 intron CG11873 + chr3R_18_29080001 chr3R_29080001 RAL-304_100b 3866 chr3R 29079374 29079412 chr3R 29080750 29080796 NOF 24 1393 12.5 16.5 14.5 1.5 1422 chr3R 29079374 intron CG11873 + chr3R 29080085 intron CG11873 + chr3R 29080796 intron CG11873 + chr3R_24_29080001 chr3R_29080001 RAL-304_100b 3867 chr3R 29091405 29091438 chr3R 29091518 29091549 8 108 13.5 40.0 26.8 0.3 144 chr3R 29091405 intron CG11873 + chr3R 29091477 intron CG11873 + chr3R 29091549 intron CG11873 + chr3R_8_29090001 chr3R_29090001 RAL-304_100b 3868 chr3R 29176106 29176130 chr3R 29176220 29176229 9 112 18.0 10.5 14.2 0.6 123 chr3R 29176106 intron CG14509 - chr3R 29176168 intron CG14509 - chr3R 29176229 intron CG14509 - chr3R_9_29175001 chr3R_29175001 RAL-304_100b 3869 chr3R 29179617 29179676 chr3R 29180102 29180153 80 480 11.0 19.0 15.0 5.0 536 chr3R 29179617 intron CG14509 - chr3R 29179885 intron CG14509 - chr3R 29180153 intron CG14509 - chr3R_80_29175001 chr3R_29175001 RAL-304_100b 3870 chr3R 29186999 29187044 chr3R 29187137 29187182 38 135 19.0 16.5 17.8 2.0 183 chr3R 29186999 intron CG14509 - chr3R 29187090 intron CG14509 - chr3R 29187182 intron CG14509 - chr3R_38_29185001 chr3R_29185001 RAL-304_100b 3871 chr3R 29213034 29213093 chr3R 29213142 29213201 53 107 15.0 12.0 13.5 3.7 167 chr3R 29213034 intergenic not near genes chr3R 29213118 intergenic not near genes chr3R 29213201 intergenic not near genes chr3R_53_29210001 chr3R_29210001 RAL-304_100b 3872 chr3R 29237231 29237237 chr3R 29239277 29239283 4 2045 130.0 28.5 79.2 0.0 2052 chr3R 29237231 exon CG11951 - chr3R 29238257 intron CG11951 - chr3R 29239283 exon CG31427 - chr3R_4_29235001 chr3R_29235001 RAL-304_100b 3873 chr3R 29237239 29237536 chr3R 29239274 29239454 19 2021 76.0 26.5 51.2 0.4 2215 chr3R 29237239 exon CG11951 - chr3R 29238346 intron CG11951 - chr3R 29239454 exon CG31427 - chr3R_19_29235001 chr3R_29235001 RAL-304_100b 3874 chr3R 29239201 29239247 chr3R 29245517 29245562 13 6303 25.5 65.0 45.2 0.3 6361 chr3R 29239201 exon CG31427 - chr3R 29242382 exon CG31445 - chr3R 29245562 exon SP1029 - chr3R_13_29240001 chr3R_29240001 RAL-304_100b 3875 chr3R 29237522 29237529 chr3R 29239405 29239427 19 1885 75.5 37.5 56.5 0.3 1905 chr3R 29237522 exon CG11951 - chr3R 29238474 intron CG11951 - chr3R 29239427 exon CG31427 - chr3R_19_29235001 chr3R_29235001 RAL-304_100b 3876 chr3R 29240448 29240504 chr3R 29240557 29240613 19 108 4.5 6.5 5.5 2.9 165 chr3R 29240448 intergenic CG31427 -,CG31445 - chr3R 29240530 intergenic CG31445 -,CG31427 - chr3R 29240613 3` UTR CG31445 - chr3R_19_29240001 chr3R_29240001 RAL-304_100b 3877 chr3R 29236607 29236622 chr3R 29246802 29246802 5 10185 47.0 101.0 74.0 0.1 10195 chr3R 29236607 intron CG11951 - chr3R 29241704 exon CG31445 - chr3R 29246802 exon SP1029 - chr3R_5_29240001 chr3R_29240001 RAL-304_100b 3878 chr3R 29282785 29282822 chr3R 29282896 29282923 36 107 12.0 34.0 23.0 1.5 138 chr3R 29282785 intergenic not near genes chr3R 29282854 intergenic not near genes chr3R 29282923 intergenic not near genes chr3R_36_29280001 chr3R_29280001 RAL-304_100b 3879 chr3R 29319803 29319840 chr3R 29320147 29320184 jockey 15 343 13.0 12.0 12.5 1.1 381 chr3R 29319803 intergenic Cnx99A - chr3R 29319994 intergenic Cnx99A - chr3R 29320184 intergenic not near genes chr3R_15_29315001 chr3R_29315001 RAL-304_100b 3880 chr3R 29319841 29319857 chr3R 29320144 29320170 jockey 11 336 6.0 11.5 8.8 1.1 329 chr3R 29319841 intergenic Cnx99A - chr3R 29320006 intergenic Cnx99A - chr3R 29320170 intergenic not near genes chr3R_11_29320001 chr3R_29320001 RAL-304_100b 3881 chr3R 29321040 29321095 chr3R 29321141 29321171 42 98 13.0 18.0 15.5 2.5 131 chr3R 29321040 intergenic not near genes chr3R 29321106 intergenic not near genes chr3R 29321171 intergenic not near genes chr3R_42_29320001 chr3R_29320001 RAL-304_100b 3882 chr3R 29406611 29406614 chr3R 29407916 29407925 jockey 6 1310 45.0 25.5 35.2 0.2 1314 chr3R 29406611 intron Ptp99A + chr3R 29407268 intron Ptp99A + chr3R 29407925 intron Ptp99A + chr3R_6_29405001 chr3R_29405001 RAL-304_100b 3883 chr3R 29406615 29406643 chr3R 29407910 29407942 jockey 25 1308 22.5 23.0 22.8 1.1 1327 chr3R 29406615 intron Ptp99A + chr3R 29407278 intron Ptp99A + chr3R 29407942 intron Ptp99A + chr3R_25_29405001 chr3R_29405001 RAL-304_100b 3884 chr3R 29420080 29420088 chr3R 29420194 29420201 5 114 14.5 18.5 16.5 0.3 121 chr3R 29420080 intron Ptp99A + chr3R 29420140 intron Ptp99A + chr3R 29420201 intron Ptp99A + chr3R_5_29420001 chr3R_29420001 RAL-304_100b 3885 chr3R 29447794 29447849 chr3R 29447926 29447976 49 127 16.0 11.0 13.5 3.4 182 chr3R 29447794 intron Ptp99A + chr3R 29447885 intron Ptp99A + chr3R 29447976 intron Ptp99A + chr3R_49_29445001 chr3R_29445001 RAL-304_100b 3886 chr3R 29449332 29449391 chr3R 29449435 29449494 34 102 11.5 11.5 11.5 2.7 162 chr3R 29449332 intron Ptp99A + chr3R 29449413 intron Ptp99A + chr3R 29449494 intron Ptp99A + chr3R_34_29445001 chr3R_29445001 RAL-304_100b 3887 chr3R 29471984 29472013 chr3R 29472102 29472131 28 116 35.0 9.0 22.0 1.2 147 chr3R 29471984 intron Ptp99A + chr3R 29472058 intron Ptp99A + chr3R 29472131 intron Ptp99A + chr3R_28_29470001 chr3R_29470001 RAL-304_100b 3888 chr3R 29472014 29472037 chr3R 29472101 29472140 18 112 19.5 9.0 14.2 1.2 126 chr3R 29472014 intron Ptp99A + chr3R 29472077 intron Ptp99A + chr3R 29472140 intron Ptp99A + chr3R_18_29470001 chr3R_29470001 RAL-304_100b 3889 chr3R 29508803 29508808 chr3R 29508970 29508975 5 167 0.5 0.0 0.2 4.2 172 chr3R 29508803 intergenic not near genes chr3R 29508889 intergenic not near genes chr3R 29508975 intergenic not near genes chr3R_5_29505001 chr3R_29505001 RAL-304_100b 3890 chr3R 29539409 29539415 chr3R 29539509 29539516 6 101 41.0 0.5 20.8 0.3 107 chr3R 29539409 intergenic not near genes chr3R 29539462 intergenic not near genes chr3R 29539516 intergenic not near genes chr3R_6_29535001 chr3R_29535001 RAL-304_100b 3891 chr3R 29539417 29539459 chr3R 29539506 29539524 26 93 11.5 1.5 6.5 3.5 107 chr3R 29539417 intergenic not near genes chr3R 29539470 intergenic not near genes chr3R 29539524 intergenic not near genes chr3R_26_29535001 chr3R_29535001 RAL-304_100b 3892 chr3R 29543655 29543684 chr3R 29543743 29543789 20 98 0.5 33.5 17.0 1.1 134 chr3R 29543655 intergenic not near genes chr3R 29543722 intergenic not near genes chr3R 29543789 intergenic not near genes chr3R_20_29540001 chr3R_29540001 RAL-304_100b 3893 chr3R 29550233 29550273 chr3R 29550336 29550345 16 99 25.0 16.0 20.5 0.7 112 chr3R 29550233 intergenic not near genes chr3R 29550289 intergenic not near genes chr3R 29550345 intergenic not near genes chr3R_16_29550001 chr3R_29550001 RAL-304_100b 3894 chr3R 28942833 28942835 chr3R 29550276 29550278 4 607443 84.0 32.5 58.2 0.1 607445 chr3R 28942833 intron CG14521 - chr3R 29246556 exon SP1029 - chr3R 29550278 intergenic not near genes chr3R_4_29245001 chr3R_29245001 RAL-304_100b 3895 chr3R 29576724 29576749 chr3R 29576857 29576867 14 130 8.5 0.0 4.2 2.7 143 chr3R 29576724 intergenic not near genes chr3R 29576796 intergenic not near genes chr3R 29576867 intergenic not near genes chr3R_14_29575001 chr3R_29575001 RAL-304_100b 3896 chr3R 29590349 29590403 chr3R 29590467 29590521 59 115 23.5 17.0 20.2 2.8 172 chr3R 29590349 exon CG31041 - chr3R 29590435 intron CG31041 - chr3R 29590521 exon CG31041 - chr3R_59_29590001 chr3R_29590001 RAL-304_100b 3897 chr3R 29592712 29592766 chr3R 29592815 29592869 26 102 9.0 9.0 9.0 2.6 157 chr3R 29592712 intron alph + chr3R 29592790 intron alph + chr3R 29592869 intron alph + chr3R_26_29590001 chr3R_29590001 RAL-304_100b 3898 chr3R 29621245 29621263 chr3R 29621347 29621365 15 100 30.0 6.0 18.0 0.8 120 chr3R 29621245 intergenic CG1907 + chr3R 29621305 intergenic not near genes chr3R 29621365 intergenic not near genes chr3R_15_29620001 chr3R_29620001 RAL-304_100b 3899 chr3R 29627262 29627275 chr3R 29627699 29627708 6 436 32.0 12.0 22.0 0.3 446 chr3R 29627262 intergenic not near genes chr3R 29627485 intergenic not near genes chr3R 29627708 intergenic not near genes chr3R_6_29625001 chr3R_29625001 RAL-304_100b 3900 chr3R 29627276 29627314 chr3R 29627696 29627729 28 421 11.0 12.0 11.5 2.2 453 chr3R 29627276 intergenic not near genes chr3R 29627502 intergenic not near genes chr3R 29627729 intergenic not near genes chr3R_28_29625001 chr3R_29625001 RAL-304_100b 3901 chr3R 29648988 29649012 chr3R 29649103 29649127 15 113 19.5 13.0 16.2 0.9 139 chr3R 29648988 intron Dop1R2 - chr3R 29649058 intron Dop1R2 - chr3R 29649127 intron Dop1R2 - chr3R_15_29645001 chr3R_29645001 RAL-304_100b 3902 chr3R 29708533 29708536 chr3R 29708636 29708639 4 102 33.5 19.0 26.2 0.1 106 chr3R 29708533 intergenic not near genes chr3R 29708586 intergenic not near genes chr3R 29708639 intergenic not near genes chr3R_4_29705001 chr3R_29705001 RAL-304_100b 3903 chr3R 29708537 29708542 chr3R 29708634 29708645 7 101 29.0 18.5 23.8 0.3 108 chr3R 29708537 intergenic not near genes chr3R 29708591 intergenic not near genes chr3R 29708645 intergenic not near genes chr3R_7_29705001 chr3R_29705001 RAL-304_100b 3904 chr3R 29708546 29708588 chr3R 29708633 29708691 44 99 11.5 18.0 14.8 2.8 145 chr3R 29708546 intergenic not near genes chr3R 29708618 intergenic not near genes chr3R 29708691 intergenic not near genes chr3R_44_29705001 chr3R_29705001 RAL-304_100b 3905 chr3R 29738245 29738256 chr3R 29739732 29739748 hobo 14 1492 21.5 12.0 16.8 0.8 1503 chr3R 29738245 intergenic CG1969 +,CG7598 + chr3R 29738996 intron CG1969 + chr3R 29739748 5` UTR CG1969 + chr3R_14_29735001 chr3R_29735001 RAL-304_100b 3906 chr3R 29738258 29738260 chr3R 29739750 29739752 hobo 4 1492 21.5 18.0 19.8 0.2 1494 chr3R 29738258 intergenic CG1969 +,CG7598 + chr3R 29739005 intron CG1969 + chr3R 29739752 5` UTR CG1969 + chr3R_4_29735001 chr3R_29735001 RAL-304_100b 3907 chr3R 29738262 29738295 chr3R 29739729 29739787 hobo 42 1487 15.0 10.5 12.8 3.0 1525 chr3R 29738262 intergenic CG1969 +,CG7598 + chr3R 29739024 intron CG1969 + chr3R 29739787 5` UTR CG1969 + chr3R_42_29735001 chr3R_29735001 RAL-304_100b 3908 chr3R 29758914 29758918 chr3R 29759017 29759021 6 103 41.0 14.5 27.8 0.2 107 chr3R 29758914 3` UTR CR44953 - chr3R 29758968 3` UTR CR44953 - chr3R 29759021 3` UTR CR44953 - chr3R_6_29755001 chr3R_29755001 RAL-304_100b 3909 chr3R 29758919 29758970 chr3R 29759016 29759073 52 96 15.5 14.0 14.8 3.3 154 chr3R 29758919 3` UTR CR44953 - chr3R 29758996 3` UTR CR44953 - chr3R 29759073 intergenic CR44953 - chr3R_52_29755001 chr3R_29755001 RAL-304_100b 3910 chr3R 29760127 29760176 chr3R 29760243 29760292 40 112 14.5 12.0 13.2 2.8 165 chr3R 29760127 intergenic not near genes chr3R 29760210 intergenic not near genes chr3R 29760292 intergenic not near genes chr3R_40_29760001 chr3R_29760001 RAL-304_100b 3911 chr3R 29760341 29760390 chr3R 29761567 29761616 pogo 19 1222 13.0 8.0 10.5 1.7 1275 chr3R 29760341 intergenic not near genes chr3R 29760978 intergenic not near genes chr3R 29761616 intergenic not near genes chr3R_19_29760001 chr3R_29760001 RAL-304_100b 3912 chr3R 29826693 29826699 chr3R 29826812 29826818 9 119 49.5 21.5 35.5 0.2 125 chr3R 29826693 intergenic not near genes chr3R 29826756 intergenic not near genes chr3R 29826818 intergenic Atg16 - chr3R_9_29825001 chr3R_29825001 RAL-304_100b 3913 chr3R 29826700 29826748 chr3R 29826811 29826819 51 111 17.0 21.5 19.2 2.5 119 chr3R 29826700 intergenic not near genes chr3R 29826760 intergenic not near genes chr3R 29826819 intergenic Atg16 - chr3R_51_29825001 chr3R_29825001 RAL-304_100b 3914 chr3R 29837630 29837669 chr3R 29838131 29838165 26 492 21.5 18.0 19.8 1.2 535 chr3R 29837630 intergenic CG15510 + chr3R 29837898 intergenic CG15510 + chr3R 29838165 intergenic not near genes chr3R_26_29835001 chr3R_29835001 RAL-304_100b 3915 chr3R 29880986 29880989 chr3R 29881096 29881100 4 111 23.5 12.5 18.0 0.2 114 chr3R 29880986 intron CG31038 + chr3R 29881043 intron CG31038 + chr3R 29881100 intron CG31038 + chr3R_4_29880001 chr3R_29880001 RAL-304_100b 3916 chr3R 29880990 29881031 chr3R 29881095 29881142 31 110 9.0 12.0 10.5 2.7 152 chr3R 29880990 intron CG31038 + chr3R 29881066 intron CG31038 + chr3R 29881142 intron CG31038 + chr3R_31_29880001 chr3R_29880001 RAL-304_100b 3917 chr3R 29881997 29882050 chr3R 29891179 29891232 roo 49 9180 10.0 12.5 11.2 4.0 9235 chr3R 29881997 intron CG31038 + chr3R 29886614 intron CG31038 + chr3R 29891232 intron CG31038 + chr3R_49_29885001 chr3R_29885001 RAL-304_100b 3918 chr3R 29950550 29950599 chr3R 29950652 29950701 36 90 18.0 13.0 15.5 2.2 151 chr3R 29950550 intergenic TkR99D - chr3R 29950626 intergenic TkR99D - chr3R 29950701 intergenic TkR99D - chr3R_36_29950001 chr3R_29950001 RAL-304_100b 3919 chr3R 29975682 29975729 chr3R 29975780 29975836 39 102 13.0 14.0 13.5 2.7 154 chr3R 29975682 intergenic not near genes chr3R 29975759 intergenic not near genes chr3R 29975836 intergenic not near genes chr3R_39_29975001 chr3R_29975001 RAL-304_100b 3920 chr3R 30032137 30032188 chr3R 30032241 30032247 28 96 18.5 18.5 18.5 1.4 110 chr3R 30032137 intron Axn + chr3R 30032192 intron Axn + chr3R 30032247 intron Axn + chr3R_28_30030001 chr3R_30030001 RAL-304_100b 3921 chr3R 30061837 30061860 chr3R 30061940 30061952 13 101 11.5 2.5 7.0 1.6 115 chr3R 30061837 intron sima + chr3R 30061894 intron sima + chr3R 30061952 intron sima + chr3R_13_30060001 chr3R_30060001 RAL-304_100b 3922 chr3R 30080432 30080482 chr3R 30080536 30080586 52 103 11.0 8.0 9.5 5.0 154 chr3R 30080432 intron sima + chr3R 30080509 intron sima + chr3R 30080586 intron sima + chr3R_52_30080001 chr3R_30080001 RAL-304_100b 3923 chr3R 30082963 30082972 chr3R 30083064 30083068 6 99 28.5 12.5 20.5 0.3 105 chr3R 30082963 intron sima + chr3R 30083016 intron sima + chr3R 30083068 intron sima + chr3R_6_30080001 chr3R_30080001 RAL-304_100b 3924 chr3R 30082976 30083023 chr3R 30083063 30083119 44 97 14.0 12.5 13.2 3.1 143 chr3R 30082976 intron sima + chr3R 30083048 intron sima + chr3R 30083119 intron sima + chr3R_44_30080001 chr3R_30080001 RAL-304_100b 3925 chr3R 30084825 30084840 chr3R 30086317 30086331 hobo 10 1491 40.0 16.0 28.0 0.3 1506 chr3R 30084825 intron sima + chr3R 30085578 intron sima + chr3R 30086331 intron sima + chr3R_10_30085001 chr3R_30085001 RAL-304_100b 3926 chr3R 30084842 30084883 chr3R 30086315 30086359 hobo 35 1488 12.5 16.0 14.2 2.3 1517 chr3R 30084842 intron sima + chr3R 30085600 intron sima + chr3R 30086359 intron sima + chr3R_35_30085001 chr3R_30085001 RAL-304_100b 3927 chr3R 30107228 30107284 chr3R 30107358 30107414 55 125 18.5 11.5 15.0 3.4 186 chr3R 30107228 intron sima + chr3R 30107321 intron sima + chr3R 30107414 intron sima + chr3R_55_30105001 chr3R_30105001 RAL-304_100b 3928 chr3R 30170649 30170678 chr3R 30170780 30170785 34 129 13.5 11.0 12.2 2.6 136 chr3R 30170649 exon CG31028 - chr3R 30170717 intron CG31028 - chr3R 30170785 intron CG31028 - chr3R_34_30170001 chr3R_30170001 RAL-304_100b 3929 chr3R 30193757 30193768 chr3R 30193873 30193884 11 114 30.5 19.5 25.0 0.4 127 chr3R 30193757 intergenic not near genes chr3R 30193820 intergenic not near genes chr3R 30193884 intergenic not near genes chr3R_11_30190001 chr3R_30190001 RAL-304_100b 3930 chr3R 30193771 30193816 chr3R 30193872 30193899 38 109 9.0 17.5 13.2 2.7 128 chr3R 30193771 intergenic not near genes chr3R 30193835 intergenic not near genes chr3R 30193899 intergenic not near genes chr3R_38_30190001 chr3R_30190001 RAL-304_100b 3931 chr3R 30211895 30211928 chr3R 30212008 30212031 22 111 12.0 13.5 12.8 1.6 136 chr3R 30211895 intergenic CecA2 + chr3R 30211963 intergenic CecA2 + chr3R 30212031 intergenic CecA2 + chr3R_22_30210001 chr3R_30210001 RAL-304_100b 3932 chr3R 30213892 30213903 chr3R 30214000 30214011 7 108 4.0 0.0 2.0 2.3 119 chr3R 30213892 intergenic CecB - chr3R 30213952 intergenic CecB - chr3R 30214011 intergenic CecB - chr3R_7_30210001 chr3R_30210001 RAL-304_100b 3933 chr3R 30214600 30214615 chr3R 30214703 30214718 5 103 29.5 12.0 20.8 0.2 118 chr3R 30214600 intergenic not near genes chr3R 30214659 intergenic not near genes chr3R 30214718 intergenic not near genes chr3R_5_30210001 chr3R_30210001 RAL-304_100b 3934 chr3R 30214616 30214654 chr3R 30214700 30214730 30 99 14.5 11.0 12.8 2.2 114 chr3R 30214616 intergenic not near genes chr3R 30214673 intergenic not near genes chr3R 30214730 intergenic not near genes chr3R_30_30210001 chr3R_30210001 RAL-304_100b 3935 chr3R 30238736 30238797 chr3R 30239925 30239982 1360 41 1184 12.5 9.0 10.8 3.5 1246 chr3R 30238736 intergenic not near genes chr3R 30239359 intergenic not near genes chr3R 30239982 intergenic not near genes chr3R_41_30235001 chr3R_30235001 RAL-304_100b 3936 chr3R 30271037 30271097 chr3R 30271148 30271157 24 92 10.5 14.0 12.2 1.8 120 chr3R 30271037 intergenic not near genes chr3R 30271097 intergenic not near genes chr3R 30271157 intergenic not near genes chr3R_24_30270001 chr3R_30270001 RAL-304_100b 3937 chr3R 7773344 7773344 chr3R 30278264 30278264 7 22504920 51.5 62.5 57.0 0.1 22504920 chr3R 7773344 intergenic not near genes chr3R 19025804 exon CG14285 + chr3R 30278264 5` UTR hdc + chr3R_7_19025001 chr3R_19025001 RAL-304_100b 3938 chr3R 30285858 30285867 chr3R 30286109 30286118 7 251 53.5 1.0 27.2 0.2 260 chr3R 30285858 intron hdc + chr3R 30285988 intron hdc + chr3R 30286118 intron hdc + chr3R_7_30285001 chr3R_30285001 RAL-304_100b 3939 chr3R 30285868 30285870 chr3R 30286108 30286121 4 248 51.0 1.0 26.0 0.1 253 chr3R 30285868 intron hdc + chr3R 30285994 intron hdc + chr3R 30286121 intron hdc + chr3R_4_30285001 chr3R_30285001 RAL-304_100b 3940 chr3R 30285871 30285908 chr3R 30286107 30286116 24 246 19.0 1.0 10.0 2.2 245 chr3R 30285871 intron hdc + chr3R 30285994 intron hdc + chr3R 30286116 intron hdc + chr3R_24_30285001 chr3R_30285001 RAL-304_100b 3941 chr3R 30287748 30287774 chr3R 30287856 30287870 6 105 16.5 8.5 12.5 0.4 122 chr3R 30287748 intron hdc + chr3R 30287809 intron hdc + chr3R 30287870 intron hdc + chr3R_6_30285001 chr3R_30285001 RAL-304_100b 3942 chr3R 30307100 30307154 chr3R 30307201 30307237 63 101 17.5 13.0 15.2 3.9 137 chr3R 30307100 intron hdc + chr3R 30307168 intron hdc + chr3R 30307237 intron hdc + chr3R_63_30305001 chr3R_30305001 RAL-304_100b 3943 chr3R 30317325 30317359 chr3R 30324919 30324976 roo 16 7614 6.5 8.0 7.2 2.0 7651 chr3R 30317325 intron hdc + chr3R 30321150 intron hdc + chr3R 30324976 intron hdc + chr3R_16_30320001 chr3R_30320001 RAL-304_100b 3944 chr3R 30347004 30347035 chr3R 30347113 30347144 25 105 23.5 23.5 23.5 1.0 140 chr3R 30347004 intron hdc + chr3R 30347074 intron hdc + chr3R 30347144 intron hdc + chr3R_25_30345001 chr3R_30345001 RAL-304_100b 3945 chr3R 30375516 30375566 chr3R 30383166 30383216 412 36 7648 13.0 15.0 14.0 2.4 7700 chr3R 30375516 intergenic not near genes chr3R 30379366 intergenic not near genes chr3R 30383216 intergenic not near genes chr3R_36_30375001 chr3R_30375001 RAL-304_100b 3946 chr3R 30396194 30396242 chr3R 30404485 30404533 roo 39 8288 22.0 20.0 21.0 1.8 8339 chr3R 30396194 intergenic not near genes chr3R 30400364 intergenic not near genes chr3R 30404533 5` UTR CR45570 + chr3R_39_30400001 chr3R_30400001 RAL-304_100b 3947 chr3R 30456366 30456424 chr3R 30456471 30456524 36 103 5.0 13.5 9.2 3.5 158 chr3R 30456366 intergenic CG2224 -,aralar1 - chr3R 30456445 3` UTR CG2224 - chr3R 30456524 3` UTR CG2224 - chr3R_36_30455001 chr3R_30455001 RAL-304_100b 3948 chr3R 30457990 30458047 chr3R 30458095 30458153 42 101 13.5 12.5 13.0 3.0 163 chr3R 30457990 intron CG2224 - chr3R 30458072 intron CG2224 - chr3R 30458153 intron CG2224 - chr3R_42_30455001 chr3R_30455001 RAL-304_100b 3949 chr3R 30461466 30461487 chr3R 30461608 30461629 15 141 41.0 9.0 25.0 0.6 163 chr3R 30461466 intron CDase + chr3R 30461548 intron CDase + chr3R 30461629 intron CDase + chr3R_15_30460001 chr3R_30460001 RAL-304_100b 3950 chr3R 30461488 30461523 chr3R 30461607 30461665 31 136 15.5 8.5 12.0 2.4 177 chr3R 30461488 intron CDase + chr3R 30461576 intron CDase + chr3R 30461665 intron CDase + chr3R_31_30460001 chr3R_30460001 RAL-304_100b 3951 chr3R 30480458 30480471 chr3R 30482943 30482964 jockey 16 2490 40.0 21.0 30.5 0.5 2506 chr3R 30480458 intron PH4alphaEFB + chr3R 30481711 intron PH4alphaEFB + chr3R 30482964 intron PH4alphaEFB + chr3R_16_30480001 chr3R_30480001 RAL-304_100b 3952 chr3R 30480472 30480512 chr3R 30482940 30482950 jockey 36 2483 15.0 19.0 17.0 2.0 2478 chr3R 30480472 intron PH4alphaEFB + chr3R 30481711 intron PH4alphaEFB + chr3R 30482950 intron PH4alphaEFB + chr3R_36_30480001 chr3R_30480001 RAL-304_100b 3953 chr3R 30485030 30485071 chr3R 30485131 30485172 31 99 7.5 12.0 9.8 2.9 142 chr3R 30485030 intron PH4alphaEFB + chr3R 30485101 intron PH4alphaEFB + chr3R 30485172 intron PH4alphaEFB + chr3R_31_30485001 chr3R_30485001 RAL-304_100b 3954 chr3R 30488097 30488115 chr3R 30488201 30488219 8 104 11.0 0.0 5.5 1.2 122 chr3R 30488097 intergenic Jon99Fii - chr3R 30488158 intergenic Jon99Fii - chr3R 30488219 intergenic Jon99Fii - chr3R_8_30485001 chr3R_30485001 RAL-304_100b 3955 chr3R 30554373 30554426 chr3R 30554474 30554517 19 96 18.0 11.0 14.5 1.2 144 chr3R 30554373 intron tmod + chr3R 30554445 intron tmod + chr3R 30554517 intron tmod + chr3R_19_30550001 chr3R_30550001 RAL-304_100b 3956 chr3R 30571676 30571722 chr3R 30571781 30571827 24 103 2.0 14.0 8.0 2.7 151 chr3R 30571676 intron tmod + chr3R 30571752 intron tmod + chr3R 30571827 exon tmod + chr3R_24_30570001 chr3R_30570001 RAL-304_100b 3957 chr3R 30627583 30627593 chr3R 30627688 30627693 5 104 50.5 20.0 35.2 0.1 110 chr3R 30627583 3` UTR CG2267 - chr3R 30627638 exon CG2267 - chr3R 30627693 exon CG2267 - chr3R_5_30625001 chr3R_30625001 RAL-304_100b 3958 chr3R 30627594 30627636 chr3R 30627684 30627720 50 97 15.0 21.5 18.2 2.6 126 chr3R 30627594 3` UTR CG2267 - chr3R 30627657 exon CG2267 - chr3R 30627720 exon CG2267 - chr3R_50_30625001 chr3R_30625001 RAL-304_100b 3959 chr3R 30677863 30677878 chr3R 30677996 30678006 21 131 8.0 12.0 10.0 1.9 143 chr3R 30677863 intergenic not near genes chr3R 30677934 intergenic not near genes chr3R 30678006 intergenic not near genes chr3R_21_30675001 chr3R_30675001 RAL-304_100b 3960 chr3R 30679494 30679552 chr3R 30686988 30687046 blood 41 7491 14.5 19.0 16.8 2.3 7552 chr3R 30679494 intergenic not near genes chr3R 30683270 intergenic not near genes chr3R 30687046 intergenic not near genes chr3R_41_30680001 chr3R_30680001 RAL-304_100b 3961 chr3R 30690136 30690192 chr3R 30690245 30690301 56 103 17.5 17.0 17.2 3.1 165 chr3R 30690136 intergenic not near genes chr3R 30690218 intergenic Spn100A + chr3R 30690301 intergenic Spn100A + chr3R_56_30690001 chr3R_30690001 RAL-304_100b 3962 chr3R 30700844 30700856 chr3R 30700992 30701004 9 148 15.0 0.5 7.8 1.0 160 chr3R 30700844 intergenic not near genes chr3R 30700924 intergenic not near genes chr3R 30701004 intergenic not near genes chr3R_9_30700001 chr3R_30700001 RAL-304_100b 3963 chr3R 30700858 30700879 chr3R 30700991 30701027 20 142 11.5 0.5 6.0 2.9 169 chr3R 30700858 intergenic not near genes chr3R 30700942 intergenic not near genes chr3R 30701027 intergenic not near genes chr3R_20_30700001 chr3R_30700001 RAL-304_100b 3964 chr3R 30761324 30761365 chr3R 30761431 30761472 12 106 7.5 22.0 14.8 0.8 148 chr3R 30761324 intergenic not near genes chr3R 30761398 intergenic not near genes chr3R 30761472 intergenic not near genes chr3R_12_30760001 chr3R_30760001 RAL-304_100b 3965 chr3R 30799041 30799085 chr3R 30799142 30799186 49 96 19.0 16.5 17.8 2.6 145 chr3R 30799041 intron wts - chr3R 30799114 intron wts - chr3R 30799186 intron wts - chr3R_49_30795001 chr3R_30795001 RAL-304_100b 3966 chr3R 30850219 30850222 chr3R 30850336 30850339 4 117 29.0 13.5 21.2 0.2 120 chr3R 30850219 intergenic not near genes chr3R 30850279 intergenic not near genes chr3R 30850339 intergenic not near genes chr3R_4_30850001 chr3R_30850001 RAL-304_100b 3967 chr3R 30850223 30850268 chr3R 30850332 30850385 36 115 10.0 12.5 11.2 3.0 162 chr3R 30850223 intergenic not near genes chr3R 30850304 intergenic not near genes chr3R 30850385 intergenic not near genes chr3R_36_30850001 chr3R_30850001 RAL-304_100b 3968 chr3R 30859381 30859427 chr3R 30859484 30859530 24 100 10.0 5.0 7.5 2.8 149 chr3R 30859381 intergenic not near genes chr3R 30859456 intergenic not near genes chr3R 30859530 intergenic not near genes chr3R_24_30855001 chr3R_30855001 RAL-304_100b 3969 chr3R 30871856 30871859 chr3R 30871915 30871968 4 95 0.0 16.5 8.2 0.4 112 chr3R 30871856 exon CG15545 - chr3R 30871912 intron CG15545 - chr3R 30871968 exon CG15545 - chr3R_4_30870001 chr3R_30870001 RAL-304_100b 3970 chr3R 30888922 30888957 chr3R 30893424 30893477 42 4507 87.5 81.5 84.5 0.5 4555 chr3R 30888922 exon Sap-r - chr3R 30891200 intergenic not near genes chr3R 30893477 intergenic not near genes chr3R_42_30890001 chr3R_30890001 RAL-304_100b 3971 chr3R 30900499 30900504 chr3R 30900604 30900609 5 105 38.5 16.5 27.5 0.2 110 chr3R 30900499 exon Cyp4c3 + chr3R 30900554 3` UTR Cyp4c3 + chr3R 30900609 3` UTR Cyp4c3 + chr3R_5_30900001 chr3R_30900001 RAL-304_100b 3972 chr3R 30900505 30900552 chr3R 30900603 30900657 53 101 11.5 15.5 13.5 3.7 152 chr3R 30900505 exon Cyp4c3 + chr3R 30900581 3` UTR Cyp4c3 + chr3R 30900657 3` UTR Cyp4c3 + chr3R_53_30900001 chr3R_30900001 RAL-304_100b 3973 chr3R 30933550 30933554 chr3R 30933673 30933677 4 123 0.0 37.5 18.8 0.2 127 chr3R 30933550 intergenic not near genes chr3R 30933614 intergenic not near genes chr3R 30933677 intergenic not near genes chr3R_4_30930001 chr3R_30930001 RAL-304_100b 3974 chr3R 30994096 30994154 chr3R 30994231 30994281 40 132 3.5 9.0 6.2 5.6 185 chr3R 30994096 intron 5-HT7 - chr3R 30994188 intron 5-HT7 - chr3R 30994281 intron 5-HT7 - chr3R_40_30990001 chr3R_30990001 RAL-304_100b 3975 chr3R 31026463 31026522 chr3R 31026569 31026621 73 99 14.5 14.5 14.5 4.7 158 chr3R 31026463 intergenic not near genes chr3R 31026542 intergenic not near genes chr3R 31026621 intergenic not near genes chr3R_73_31025001 chr3R_31025001 RAL-304_100b 3976 chr3R 31042085 31042144 chr3R 31042196 31042256 72 108 15.5 16.5 16.0 4.2 171 chr3R 31042085 intron CanA1 + chr3R 31042170 intron CanA1 + chr3R 31042256 intron CanA1 + chr3R_72_31040001 chr3R_31040001 RAL-304_100b 3977 chr3R 31070822 31070880 chr3R 31070927 31070985 54 97 11.0 11.0 11.0 4.5 163 chr3R 31070822 intron Sox100B + chr3R 31070904 intron Sox100B + chr3R 31070985 intron Sox100B + chr3R_54_31070001 chr3R_31070001 RAL-304_100b 3978 chr3R 31073320 31073346 chr3R 31073425 31073452 31 103 31.0 40.5 35.8 0.8 132 chr3R 31073320 exon Sox100B + chr3R 31073386 intron Sox100B + chr3R 31073452 intron Sox100B + chr3R_31_31070001 chr3R_31070001 RAL-304_100b 3979 chr3R 31074218 31074246 chr3R 31081830 31081869 springer 25 7619 22.0 16.0 19.0 1.2 7651 chr3R 31074218 intron Sox100B + chr3R 31078044 intron Sox100B + chr3R 31081869 intron Sox100B + chr3R_25_31075001 chr3R_31075001 RAL-304_100b 3980 chr3R 31074247 31074258 chr3R 31081828 31081881 springer 10 7615 17.0 15.0 16.0 0.6 7634 chr3R 31074247 intron Sox100B + chr3R 31078064 intron Sox100B + chr3R 31081881 intron Sox100B + chr3R_10_31075001 chr3R_31075001 RAL-304_100b 3981 chr3R 31103188 31103190 chr3R 31103299 31103316 5 120 36.5 20.5 28.5 0.2 128 chr3R 31103188 intergenic not near genes chr3R 31103252 intergenic not near genes chr3R 31103316 intergenic not near genes chr3R_5_31100001 chr3R_31100001 RAL-304_100b 3982 chr3R 31103193 31103229 chr3R 31103294 31103345 28 116 14.0 14.0 14.0 1.9 152 chr3R 31103193 intergenic not near genes chr3R 31103269 intergenic not near genes chr3R 31103345 intergenic not near genes chr3R_28_31100001 chr3R_31100001 RAL-304_100b 3983 chr3R 31115062 31115073 chr3R 31115175 31115186 6 113 29.0 0.0 14.5 0.4 124 chr3R 31115062 intergenic not near genes chr3R 31115124 intergenic not near genes chr3R 31115186 intergenic not near genes chr3R_6_31115001 chr3R_31115001 RAL-304_100b 3984 chr3R 31115084 31115108 chr3R 31115174 31115233 21 121 14.0 0.0 7.0 2.6 149 chr3R 31115084 intergenic not near genes chr3R 31115158 intergenic not near genes chr3R 31115233 intergenic not near genes chr3R_21_31115001 chr3R_31115001 RAL-304_100b 3985 chr3R 31116373 31116426 chr3R 31116493 31116547 50 115 18.5 15.0 16.8 2.8 174 chr3R 31116373 intergenic not near genes chr3R 31116460 intergenic not near genes chr3R 31116547 intergenic not near genes chr3R_50_31115001 chr3R_31115001 RAL-304_100b 3986 chr3R 31137132 31137185 chr3R 31137237 31137290 48 99 12.0 14.0 13.0 3.4 158 chr3R 31137132 intron Gycbeta100B + chr3R 31137211 intron Gycbeta100B + chr3R 31137290 intron Gycbeta100B + chr3R_48_31135001 chr3R_31135001 RAL-304_100b 3987 chr3R 31161385 31161442 chr3R 31161924 31161976 42 531 11.0 10.0 10.5 3.7 591 chr3R 31161385 intron,intron Gycbeta100B +,stops - chr3R 31161680 intron,intron Gycbeta100B +,stops - chr3R 31161976 intron,intron Gycbeta100B +,stops - chr3R_42_31160001 chr3R_31160001 RAL-304_100b 3988 chr3R 31270878 31270882 chr3R 31270985 31270989 5 107 39.5 0.0 19.8 0.2 111 chr3R 31270878 intergenic not near genes chr3R 31270934 intergenic not near genes chr3R 31270989 intergenic not near genes chr3R_5_31270001 chr3R_31270001 RAL-304_100b 3989 chr3R 31279353 31279384 chr3R 31285569 31285600 diver 16 6214 26.0 18.5 22.2 0.7 6247 chr3R 31279353 intergenic not near genes chr3R 31282476 intergenic not near genes chr3R 31285600 intergenic not near genes chr3R_16_31280001 chr3R_31280001 RAL-304_100b 3990 chr3R 31279385 31279402 chr3R 31285568 31285612 diver 16 6209 15.0 18.5 16.8 0.9 6227 chr3R 31279385 intergenic not near genes chr3R 31282498 intergenic not near genes chr3R 31285612 intergenic not near genes chr3R_16_31280001 chr3R_31280001 RAL-304_100b 3991 chr3R 31413067 31413074 chr3R 31418292 31418294 copia 6 5224 42.0 17.5 29.8 0.2 5227 chr3R 31413067 intron Gprk2 + chr3R 31415680 intron Gprk2 + chr3R 31418294 intron Gprk2 + chr3R_6_31415001 chr3R_31415001 RAL-304_100b 3992 chr3R 31413075 31413086 chr3R 31418290 31418311 copia 10 5223 35.5 16.0 25.8 0.4 5236 chr3R 31413075 intron Gprk2 + chr3R 31415693 intron Gprk2 + chr3R 31418311 intron Gprk2 + chr3R_10_31415001 chr3R_31415001 RAL-304_100b 3993 chr3R 31413087 31413123 chr3R 31418288 31418348 copia 27 5215 14.5 15.5 15.0 1.7 5261 chr3R 31413087 intron Gprk2 + chr3R 31415718 intron Gprk2 + chr3R 31418348 intron Gprk2 + chr3R_27_31415001 chr3R_31415001 RAL-304_100b 3994 chr3R 31426862 31426908 chr3R 31426976 31427025 34 115 10.0 11.0 10.5 3.0 163 chr3R 31426862 intron Gprk2 + chr3R 31426944 intron Gprk2 + chr3R 31427025 intron Gprk2 + chr3R_34_31425001 chr3R_31425001 RAL-304_100b 3995 chr3R 31431081 31431133 chr3R 31431192 31431244 52 106 16.5 12.0 14.2 3.4 163 chr3R 31431081 intron Gprk2 + chr3R 31431162 intron Gprk2 + chr3R 31431244 intron Gprk2 + chr3R_52_31430001 chr3R_31430001 RAL-304_100b 3996 chr3R 31442245 31442297 chr3R 31442355 31442407 59 106 15.0 19.5 17.2 3.2 162 chr3R 31442245 intron Gprk2 + chr3R 31442326 intron Gprk2 + chr3R 31442407 intron Gprk2 + chr3R_59_31440001 chr3R_31440001 RAL-304_100b 3997 chr3R 31516948 31516958 chr3R 31517115 31517123 6 166 53.5 20.5 37.0 0.2 175 chr3R 31516948 intergenic not near genes chr3R 31517036 intergenic not near genes chr3R 31517123 intergenic not near genes chr3R_6_31515001 chr3R_31515001 RAL-304_100b 3998 chr3R 31516959 31517002 chr3R 31517111 31517169 58 163 22.0 17.5 19.8 2.8 210 chr3R 31516959 intergenic not near genes chr3R 31517064 intergenic not near genes chr3R 31517169 intergenic not near genes chr3R_58_31515001 chr3R_31515001 RAL-304_100b 3999 chr3R 31530794 31530807 chr3R 31531146 31531148 4 348 48.5 13.0 30.8 0.1 354 chr3R 31530794 intergenic not near genes chr3R 31530971 intergenic not near genes chr3R 31531148 intergenic not near genes chr3R_4_31530001 chr3R_31530001 RAL-304_100b 4000 chr3R 31530810 31530848 chr3R 31531143 31531168 64 335 19.0 11.0 15.0 4.0 358 chr3R 31530810 intergenic not near genes chr3R 31530989 intergenic not near genes chr3R 31531168 intergenic not near genes chr3R_64_31530001 chr3R_31530001 RAL-304_100b 4001 chr3R 31538467 31538473 chr3R 31538570 31538576 6 102 35.0 14.5 24.8 0.2 109 chr3R 31538467 intergenic not near genes chr3R 31538522 intergenic not near genes chr3R 31538576 intergenic not near genes chr3R_6_31535001 chr3R_31535001 RAL-304_100b 4002 chr3R 31538474 31538519 chr3R 31538566 31538607 28 98 13.0 13.0 13.0 2.0 133 chr3R 31538474 intergenic not near genes chr3R 31538540 intergenic not near genes chr3R 31538607 intergenic not near genes chr3R_28_31535001 chr3R_31535001 RAL-304_100b 4003 chr3R 31637836 31637897 chr3R 31637949 31638010 49 111 8.0 13.5 10.8 4.2 174 chr3R 31637836 intron kek6 + chr3R 31637923 intron kek6 + chr3R 31638010 intron kek6 + chr3R_49_31635001 chr3R_31635001 RAL-304_100b 4004 chr3R 31670580 31670592 chr3R 31670699 31670711 11 119 29.5 14.5 22.0 0.5 131 chr3R 31670580 intron CG1815 + chr3R 31670646 intron CG1815 + chr3R 31670711 intron CG1815 + chr3R_11_31670001 chr3R_31670001 RAL-304_100b 4005 chr3R 31670595 31670619 chr3R 31670714 31670738 30 118 17.0 26.0 21.5 1.3 143 chr3R 31670595 intron CG1815 + chr3R 31670666 intron CG1815 + chr3R 31670738 intron CG1815 + chr3R_30_31670001 chr3R_31670001 RAL-304_100b 4006 chr3R 31670621 31670636 chr3R 31670710 31670730 14 114 10.0 21.0 15.5 0.8 109 chr3R 31670621 intron CG1815 + chr3R 31670676 intron CG1815 + chr3R 31670730 intron CG1815 + chr3R_14_31670001 chr3R_31670001 RAL-304_100b 4007 chr3R 31691508 31691563 chr3R 31696299 31696353 Doc 50 4784 11.0 22.0 16.5 2.9 4845 chr3R 31691508 intergenic not near genes chr3R 31693930 intergenic not near genes chr3R 31696353 intergenic not near genes chr3R_50_31690001 chr3R_31690001 RAL-304_100b 4008 chr3R 31699698 31699708 chr3R 31699805 31699815 6 106 43.0 21.5 32.2 0.2 117 chr3R 31699698 intergenic not near genes chr3R 31699756 intergenic not near genes chr3R 31699815 intergenic not near genes chr3R_6_31695001 chr3R_31695001 RAL-304_100b 4009 chr3R 31699715 31699752 chr3R 31699797 31699816 48 96 14.5 15.0 14.8 3.0 101 chr3R 31699715 intergenic not near genes chr3R 31699766 intergenic not near genes chr3R 31699816 intergenic not near genes chr3R_48_31695001 chr3R_31695001 RAL-304_100b 4010 chr3R 31831516 31831525 chr3R 31831620 31831629 6 104 29.5 19.5 24.5 0.2 113 chr3R 31831516 intron RhoGAP100F + chr3R 31831572 intron RhoGAP100F + chr3R 31831629 intron RhoGAP100F + chr3R_6_31830001 chr3R_31830001 RAL-304_100b 4011 chr3R 31831527 31831569 chr3R 31831616 31831673 50 100 12.5 18.5 15.5 3.0 146 chr3R 31831527 intron RhoGAP100F + chr3R 31831600 intron RhoGAP100F + chr3R 31831673 intron RhoGAP100F + chr3R_50_31830001 chr3R_31830001 RAL-304_100b 4012 chr3R 31858150 31858206 chr3R 31858275 31858334 11 122 0.0 14.0 7.0 1.4 184 chr3R 31858150 intron heph - chr3R 31858242 intron heph - chr3R 31858334 intron heph - chr3R_11_31855001 chr3R_31855001 RAL-304_100b 4013 chr3R 31863297 31863327 chr3R 31863406 31863436 36 102 18.5 44.0 31.2 1.1 139 chr3R 31863297 intron heph - chr3R 31863366 intron heph - chr3R 31863436 intron heph - chr3R_36_31860001 chr3R_31860001 RAL-304_100b 4014 chr3R 31865019 31865065 chr3R 31865122 31865181 34 106 0.5 17.0 8.8 3.5 162 chr3R 31865019 intron heph - chr3R 31865100 intron heph - chr3R 31865181 exon heph - chr3R_34_31865001 chr3R_31865001 RAL-304_100b 4015 chr3R 31870629 31870686 chr3R 31870745 31870802 59 110 2.5 19.0 10.8 5.0 173 chr3R 31870629 intron heph - chr3R 31870716 intron heph - chr3R 31870802 intron heph - chr3R_59_31870001 chr3R_31870001 RAL-304_100b 4016 chr3R 31924554 31924604 chr3R 31924658 31924710 16 102 0.0 16.0 8.0 1.8 156 chr3R 31924554 intron heph - chr3R 31924632 intron heph - chr3R 31924710 intron heph - chr3R_16_31920001 chr3R_31920001 RAL-304_100b 4017 chr3R 31925665 31925720 chr3R 31925766 31925821 34 100 9.0 12.5 10.8 2.9 156 chr3R 31925665 intron heph - chr3R 31925743 intron heph - chr3R 31925821 intron heph - chr3R_34_31925001 chr3R_31925001 RAL-304_100b 4018 chr3R 31931168 31931216 chr3R 31931276 31931324 27 107 11.0 13.0 12.0 2.1 156 chr3R 31931168 intron heph - chr3R 31931246 intron heph - chr3R 31931324 intron heph - chr3R_27_31930001 chr3R_31930001 RAL-304_100b 4019 chr3R 31949480 31949538 chr3R 31949591 31949634 44 108 16.0 11.0 13.5 3.0 154 chr3R 31949480 intron heph - chr3R 31949557 intron heph - chr3R 31949634 intron heph - chr3R_44_31945001 chr3R_31945001 RAL-304_100b 4020 chr3R 31953642 31953652 chr3R 31953744 31953754 5 102 7.0 12.0 9.5 0.5 112 chr3R 31953642 intron heph - chr3R 31953698 intron heph - chr3R 31953754 intron heph - chr3R_5_31950001 chr3R_31950001 RAL-304_100b 4021 chr3R 31986247 31986256 chr3R 31986721 31986733 11 483 2.5 22.5 12.5 0.8 486 chr3R 31986247 intron,intron heph -,CG2003 + chr3R 31986490 intron,intron heph -,CG2003 + chr3R 31986733 intron,intron heph -,CG2003 + chr3R_11_31985001 chr3R_31985001 RAL-304_100b 4022 chr3R 31991080 31991137 chr3R 31991184 31991241 26 102 10.0 9.0 9.5 2.5 161 chr3R 31991080 intron heph - chr3R 31991160 intron heph - chr3R 31991241 intron heph - chr3R_26_31990001 chr3R_31990001 RAL-304_100b 4023 chr3R 31997974 31997977 chr3R 32005463 32005472 blood 6 7494 26.0 9.5 17.8 0.3 7498 chr3R 31997974 intron heph - chr3R 32001723 intron heph - chr3R 32005472 intron heph - chr3R_6_32000001 chr3R_32000001 RAL-304_100b 4024 chr3R 31997978 31998022 chr3R 32005461 32005517 blood 48 7493 10.0 9.0 9.5 4.6 7539 chr3R 31997978 intron heph - chr3R 32001748 intron heph - chr3R 32005517 intron heph - chr3R_48_32000001 chr3R_32000001 RAL-304_100b 4025 chr3R 32022299 32022322 chr3R 32022425 32022443 15 125 36.5 12.5 24.5 0.6 144 chr3R 32022299 5` UTR CR45557 + chr3R 32022371 5` UTR CR45557 + chr3R 32022443 5` UTR CR45557 + chr3R_15_32020001 chr3R_32020001 RAL-304_100b 4026 chr3R 32022324 32022357 chr3R 32022424 32022479 24 119 16.5 12.0 14.2 1.6 155 chr3R 32022324 5` UTR CR45557 + chr3R 32022402 5` UTR CR45557 + chr3R 32022479 5` UTR CR45557 + chr3R_24_32020001 chr3R_32020001 RAL-304_100b 4027 chr3R 32045554 32045586 chr3R 32045659 32045690 19 103 15.0 13.0 14.0 1.3 136 chr3R 32045554 3` UTR krz - chr3R 32045622 3` UTR krz - chr3R 32045690 3` UTR krz - chr3R_19_32045001 chr3R_32045001 RAL-304_100b 4028 chr3R 32045587 32045602 chr3R 32045650 32045707 7 98 10.0 12.0 11.0 0.6 120 chr3R 32045587 3` UTR krz - chr3R 32045647 3` UTR krz - chr3R 32045707 3` UTR krz - chr3R_7_32045001 chr3R_32045001 RAL-304_100b 4029 chr4 76475 76512 chr4 81938 81944 I-element 24 5464 18.5 11.0 14.8 1.5 5469 chr4 76475 intron pan + chr4 79210 intron pan + chr4 81944 intron pan + chr4_24_75001 chr4_75001 RAL-304_100b 4030 chr4 257379 257403 chr4 257574 257598 13 194 16.5 9.5 13.0 0.9 219 chr4 257379 exon RhoGAP102A + chr4 257488 intron RhoGAP102A + chr4 257598 intron RhoGAP102A + chr4_13_255001 chr4_255001 RAL-304_100b 4031 chr4 257406 257436 chr4 257572 257631 23 193 5.5 9.0 7.2 2.8 225 chr4 257406 intron RhoGAP102A + chr4 257518 intron RhoGAP102A + chr4 257631 intron RhoGAP102A + chr4_23_255001 chr4_255001 RAL-304_100b 4032 chr4 280778 280805 chr4 281433 281460 16 655 9.5 9.0 9.2 1.6 682 chr4 280778 intron Syt7 - chr4 281119 intron Syt7 - chr4 281460 intron Syt7 - chr4_16_280001 chr4_280001 RAL-304_100b 4033 chr4 314493 314527 chr4 314596 314629 14 101 4.0 7.0 5.5 2.2 136 chr4 314493 intergenic Zip102B -,CG32850 + chr4 314561 intergenic CG32850 +,Zip102B - chr4 314629 intergenic CG32850 + chr4_14_310001 chr4_310001 RAL-304_100b 4034 chr4 319967 320019 chr4 328168 328220 Stalker2 14 8192 10.0 4.0 7.0 1.8 8253 chr4 319967 3` UTR CG32850 + chr4 324094 intron CG32850 + chr4 328220 3` UTR,3` UTR CG32850 +,PMCA - chr4_14_320001 chr4_320001 RAL-304_100b 4035 chr4 368679 368706 chr4 368836 368862 13 156 12.5 14.0 13.2 0.9 183 chr4 368679 intron Hcf + chr4 368770 intron Hcf + chr4 368862 intron Hcf + chr4_13_365001 chr4_365001 RAL-304_100b 4036 chr4 671584 671597 chr4 680192 680205 Tirant 13 8606 38.0 21.5 29.8 0.4 8621 chr4 671584 intron CG11360 + chr4 675894 intron CG11360 + chr4 680205 intron CG11360 + chr4_13_675001 chr4_675001 RAL-304_100b 4037 chr4 671598 671632 chr4 680190 680208 Tirant 28 8603 21.5 21.0 21.2 1.3 8610 chr4 671598 intron CG11360 + chr4 675903 intron CG11360 + chr4 680208 intron CG11360 + chr4_28_675001 chr4_675001 RAL-304_100b 4038 chr4 706629 706639 chr4 706837 706853 6 209 40.5 41.0 40.8 0.1 224 chr4 706629 intron ey + chr4 706741 intron ey + chr4 706853 intron ey + chr4_6_705001 chr4_705001 RAL-304_100b 4039 chr4 726644 726689 chr4 726759 726804 13 115 6.0 11.5 8.8 1.3 160 chr4 726644 intron bt + chr4 726724 intron bt + chr4 726804 intron bt + chr4_13_725001 chr4_725001 RAL-304_100b 4040 chr4 959601 959652 chr4 959805 959856 31 203 8.5 10.5 9.5 3.0 255 chr4 959601 intergenic CR44030 +,CR45201 - chr4 959728 5` UTR CR44030 + chr4 959856 5` UTR CR44030 + chr4_31_955001 chr4_955001 RAL-304_100b 4041 chr4 972472 972520 chr4 972579 972627 16 105 8.0 7.0 7.5 1.9 155 chr4 972472 intron fuss - chr4 972550 intron fuss - chr4 972627 intron fuss - chr4_16_970001 chr4_970001 RAL-304_100b 4042 chrX 295834 295881 chrX 303479 303526 412 36 7644 7.5 9.5 8.5 3.8 7692 chrX 295834 intron CG3777 + chrX 299680 intron CG3777 + chrX 303526 intron CG3777 + chrX_36_295001 chrX_295001 RAL-304_100b 4043 chrX 318448 318459 chrX 323559 323570 flea 8 5111 16.5 13.5 15.0 0.5 5122 chrX 318448 intron,intron CG3777 +,CG32816 - chrX 321009 intron,intron CG3777 +,CG32816 - chrX 323570 intron,intron CG3777 +,CG32816 - chrX_8_320001 chrX_320001 RAL-304_100b 4044 chrX 318462 318497 chrX 323558 323607 flea 19 5107 9.0 13.0 11.0 1.6 5145 chrX 318462 intron,intron CG3777 +,CG32816 - chrX 321034 intron,intron CG3777 +,CG32816 - chrX 323607 intron,intron CG3777 +,CG32816 - chrX_19_320001 chrX_320001 RAL-304_100b 4045 chrX 342479 342504 chrX 342638 342663 10 157 26.0 8.0 17.0 0.6 184 chrX 342479 intron,intron CG3777 +,CG32816 - chrX 342571 intron,intron CG3777 +,CG32816 - chrX 342663 intron,intron CG3777 +,CG32816 - chrX_10_340001 chrX_340001 RAL-304_100b 4046 chrX 342505 342523 chrX 342635 342682 11 155 17.0 8.0 12.5 0.8 177 chrX 342505 intron,intron CG3777 +,CG32816 - chrX 342594 intron,intron CG3777 +,CG32816 - chrX 342682 intron,intron CG3777 +,CG32816 - chrX_11_340001 chrX_340001 RAL-304_100b 4047 chrX 428396 428405 chrX 434606 434615 3S18 5 6210 26.0 7.5 16.8 0.3 6219 chrX 428396 intron CG32816 - chrX 431506 intron CG32816 - chrX 434615 intron CG32816 - chrX_5_430001 chrX_430001 RAL-304_100b 4048 chrX 428410 428451 chrX 434603 434641 3S18 29 6206 13.5 7.0 10.2 2.6 6231 chrX 428410 intron CG32816 - chrX 431526 intron CG32816 - chrX 434641 intron CG32816 - chrX_29_430001 chrX_430001 RAL-304_100b 4049 chrX 551401 551453 chrX 558984 559038 412 55 7581 19.0 19.5 19.2 2.7 7637 chrX 551401 intron Appl + chrX 555220 intron Appl + chrX 559038 intron Appl + chrX_55_555001 chrX_555001 RAL-304_100b 4050 chrX 609869 609882 chrX 609979 609999 8 113 21.5 15.0 18.2 0.4 130 chrX 609869 intron CG13366 - chrX 609934 intron CG13366 - chrX 609999 intron CG13366 - chrX_8_605001 chrX_605001 RAL-304_100b 4051 chrX 609885 609919 chrX 609976 610021 22 107 9.5 13.5 11.5 1.8 136 chrX 609885 intron CG13366 - chrX 609953 intron CG13366 - chrX 610021 intron CG13366 - chrX_22_605001 chrX_605001 RAL-304_100b 4052 chrX 701735 701735 chrX 12946233 12946235 4 12244500 51.0 38.0 44.5 0.1 12244500 chrX 701735 intron sdk + chrX 6823985 exon Atx-1 + chrX 12946235 3` UTR fne + chrX_4_6820001 chrX_6820001 RAL-304_100b 4053 chrX 802262 802277 chrX 802364 802378 15 99 40.5 15.0 27.8 0.5 116 chrX 802262 exon CG13359 - chrX 802320 exon CG13359 - chrX 802378 exon CG13359 - chrX_15_800001 chrX_800001 RAL-304_100b 4054 chrX 802279 802319 chrX 802362 802406 31 95 16.5 14.0 15.2 1.9 127 chrX 802279 exon CG13359 - chrX 802342 exon CG13359 - chrX 802406 exon CG13359 - chrX_31_800001 chrX_800001 RAL-304_100b 4055 chrX 812248 812266 chrX 817904 817922 297 4 5656 12.5 13.0 12.8 0.3 5674 chrX 812248 intron CG43867 - chrX 815085 intron CG43867 - chrX 817922 intron CG43867 - chrX_4_815001 chrX_815001 RAL-304_100b 4056 chrX 812270 812296 chrX 817898 817942 297 12 5646 7.5 11.5 9.5 1.1 5672 chrX 812270 intron CG43867 - chrX 815106 intron CG43867 - chrX 817942 intron CG43867 - chrX_12_815001 chrX_815001 RAL-304_100b 4057 chrX 827580 827605 chrX 835394 835414 roo 5 7815 18.5 8.0 13.2 0.4 7834 chrX 827580 intron CG43867 - chrX 831497 intron CG43867 - chrX 835414 intron CG43867 - chrX_5_830001 chrX_830001 RAL-304_100b 4058 chrX 827606 827632 chrX 835393 835416 roo 14 7810 8.5 7.0 7.8 1.6 7810 chrX 827606 intron CG43867 - chrX 831511 intron CG43867 - chrX 835416 intron CG43867 - chrX_14_830001 chrX_830001 RAL-304_100b 4059 chrX 906677 906710 chrX 908491 908524 S-element 29 1812 31.5 25.5 28.5 1.0 1847 chrX 906677 intron CG43867 - chrX 907600 intron CG43867 - chrX 908524 intron CG43867 - chrX_29_905001 chrX_905001 RAL-304_100b 4060 chrX 906712 906731 chrX 908490 908545 S-element 22 1807 14.5 25.0 19.8 1.1 1833 chrX 906712 intron CG43867 - chrX 907628 intron CG43867 - chrX 908545 intron CG43867 - chrX_22_905001 chrX_905001 RAL-304_100b 4061 chrX 1051051 1051086 chrX 1051154 1051178 23 101 17.0 17.5 17.2 1.3 127 chrX 1051051 intron CR44779 + chrX 1051114 intron CR44779 + chrX 1051178 intron CR44779 + chrX_23_1050001 chrX_1050001 RAL-304_100b 4062 chrX 1053120 1053120 chrX 16983076 16983077 16 15929956 33.5 46.0 39.8 0.4 15929957 chrX 1053120 intron CR44779 + chrX 9018098 intron,intron rdgA +,CR43836 - chrX 16983077 intron CG45002 - chrX_16_9015001 chrX_9015001 RAL-304_100b 4063 chrX 1063733 1063745 chrX 1072551 1072563 roo 8 8818 17.5 15.0 16.2 0.5 8830 chrX 1063733 intron CR44779 + chrX 1068148 intron CR44779 + chrX 1072563 intron CR44779 + chrX_8_1065001 chrX_1065001 RAL-304_100b 4064 chrX 1063746 1063750 chrX 1072548 1072568 roo 4 8814 15.5 14.0 14.8 0.3 8822 chrX 1063746 intron CR44779 + chrX 1068157 intron CR44779 + chrX 1072568 intron CR44779 + chrX_4_1065001 chrX_1065001 RAL-304_100b 4065 chrX 1191928 1191981 chrX 1192028 1192060 39 92 22.0 19.5 20.8 1.8 132 chrX 1191928 intron CG11380 + chrX 1191994 intron CG11380 + chrX 1192060 intron CG11380 + chrX_39_1190001 chrX_1190001 RAL-304_100b 4066 chrX 1253708 1253713 chrX 1253815 1253819 5 106 27.5 14.0 20.8 0.2 111 chrX 1253708 intron Atf3 - chrX 1253764 intron Atf3 - chrX 1253819 intron Atf3 - chrX_5_1250001 chrX_1250001 RAL-304_100b 4067 chrX 1253714 1253763 chrX 1253811 1253870 38 102 10.5 12.5 11.5 3.0 156 chrX 1253714 intron Atf3 - chrX 1253792 intron Atf3 - chrX 1253870 intron Atf3 - chrX_38_1250001 chrX_1250001 RAL-304_100b 4068 chrX 1277204 1277226 chrX 1277398 1277409 12 191 35.5 18.0 26.8 0.4 205 chrX 1277204 intergenic not near genes chrX 1277306 intergenic not near genes chrX 1277409 intergenic not near genes chrX_12_1275001 chrX_1275001 RAL-304_100b 4069 chrX 1277227 1277258 chrX 1277397 1277430 17 183 15.5 17.5 16.5 1.0 203 chrX 1277227 intergenic not near genes chrX 1277328 intergenic not near genes chrX 1277430 intergenic not near genes chrX_17_1275001 chrX_1275001 RAL-304_100b 4070 chrX 1357756 1357764 chrX 1367951 1367953 Doc 5 10193 24.5 17.5 21.0 0.2 10197 chrX 1357756 intergenic png - chrX 1362854 intergenic not near genes chrX 1367953 intergenic not near genes chrX_5_1360001 chrX_1360001 RAL-304_100b 4071 chrX 1357765 1357776 chrX 1367950 1367971 Doc 8 10193 18.0 17.0 17.5 0.4 10206 chrX 1357765 intergenic png - chrX 1362868 intergenic not near genes chrX 1367971 intergenic not near genes chrX_8_1360001 chrX_1360001 RAL-304_100b 4072 chrX 1357777 1357796 chrX 1367948 1367991 Doc 15 10190 10.5 15.5 13.0 1.1 10214 chrX 1357777 intergenic png - chrX 1362884 intergenic not near genes chrX 1367991 intergenic not near genes chrX_15_1360001 chrX_1360001 RAL-304_100b 4073 chrX 1357799 1357806 chrX 1367945 1368001 Doc 11 10186 7.5 14.5 11.0 0.9 10202 chrX 1357799 intergenic png - chrX 1362900 intergenic not near genes chrX 1368001 intergenic not near genes chrX_11_1360001 chrX_1360001 RAL-304_100b 4074 chrX 1387003 1387032 chrX 1387106 1387135 28 100 27.0 24.0 25.5 1.1 132 chrX 1387003 intron CG32813 + chrX 1387069 intron CG32813 + chrX 1387135 intron CG32813 + chrX_28_1385001 chrX_1385001 RAL-304_100b 4075 chrX 1418833 1418878 chrX 1418978 1418992 34 137 15.5 14.0 14.8 2.2 159 chrX 1418833 intron futsch + chrX 1418912 intron futsch + chrX 1418992 intron futsch + chrX_34_1415001 chrX_1415001 RAL-304_100b 4076 chrX 1423627 1423634 chrX 1423750 1423757 6 123 31.0 8.5 19.8 0.3 130 chrX 1423627 intron futsch + chrX 1423692 intron futsch + chrX 1423757 intron futsch + chrX_6_1420001 chrX_1420001 RAL-304_100b 4077 chrX 1423635 1423679 chrX 1423749 1423798 31 108 11.5 7.0 9.2 3.0 163 chrX 1423635 intron futsch + chrX 1423716 intron futsch + chrX 1423798 intron futsch + chrX_31_1420001 chrX_1420001 RAL-304_100b 4078 chrX 1518017 1518075 chrX 1523444 1523460 jockey 34 5421 10.0 18.0 14.0 2.3 5443 chrX 1518017 intergenic inc + chrX 1520738 intergenic not near genes chrX 1523460 intergenic not near genes chrX_34_1520001 chrX_1520001 RAL-304_100b 4079 chrX 1560630 1560685 chrX 1560747 1560785 35 112 10.0 16.0 13.0 2.5 155 chrX 1560630 intron Mur2B - chrX 1560708 intron Mur2B - chrX 1560785 intron Mur2B - chrX_35_1560001 chrX_1560001 RAL-304_100b 4080 chrX 1627966 1627985 chrX 1635444 1635458 gtwin 11 7487 19.5 15.0 17.2 0.6 7492 chrX 1627966 intron,intron Mur2B -,br + chrX 1631712 intron,intron Mur2B -,br + chrX 1635458 intron,intron Mur2B -,br + chrX_11_1630001 chrX_1630001 RAL-304_100b 4081 chrX 1706832 1706841 chrX 1706933 1706942 9 101 27.5 34.5 31.0 0.3 110 chrX 1706832 intergenic not near genes chrX 1706887 intergenic not near genes chrX 1706942 intergenic not near genes chrX_9_1705001 chrX_1705001 RAL-304_100b 4082 chrX 1930513 1930567 chrX 1938109 1938157 opus 21 7591 3.0 6.0 4.5 3.8 7644 chrX 1930513 3` UTR CG11596 + chrX 1934335 intergenic not near genes chrX 1938157 3` UTR CG3857 - chrX_21_1930001 chrX_1930001 RAL-304_100b 4083 chrX 1954863 1954875 chrX 1962828 1962840 Stalker2 9 7965 33.5 9.5 21.5 0.4 7977 chrX 1954863 intron Hr4 + chrX 1958852 intron Hr4 + chrX 1962840 intron Hr4 + chrX_9_1955001 chrX_1955001 RAL-304_100b 4084 chrX 1954876 1954919 chrX 1962826 1962846 Stalker2 27 7953 11.5 8.5 10.0 2.5 7970 chrX 1954876 intron Hr4 + chrX 1958861 intron Hr4 + chrX 1962846 intron Hr4 + chrX_27_1955001 chrX_1955001 RAL-304_100b 4085 chrX 1974236 1974279 chrX 1974352 1974395 20 111 9.5 14.0 11.8 1.6 159 chrX 1974236 intron Hr4 + chrX 1974316 intron Hr4 + chrX 1974395 intron Hr4 + chrX_20_1970001 chrX_1970001 RAL-304_100b 4086 chrX 2159859 2159863 chrX 15115118 15115138 4 12955263 73.5 38.5 56.0 0.1 12955279 chrX 2159859 exon Cyp4d1 - chrX 8637498 intron oc - chrX 15115138 exon Cyp4s3 - chrX_4_8635001 chrX_8635001 RAL-304_100b 4087 chrX 2399818 2399824 chrX 2408189 2408192 roo 5 8373 47.5 0.5 24.0 0.2 8374 chrX 2399818 intergenic not near genes chrX 2404005 intergenic not near genes chrX 2408192 intergenic not near genes chrX_5_2400001 chrX_2400001 RAL-304_100b 4088 chrX 2399825 2399870 chrX 2408188 2408236 roo 34 8362 15.5 0.5 8.0 3.8 8411 chrX 2399825 intergenic not near genes chrX 2404030 intergenic not near genes chrX 2408236 intergenic not near genes chrX_34_2400001 chrX_2400001 RAL-304_100b 4089 chrX 2578787 2578801 chrX 2578904 2578918 6 117 12.5 11.5 12.0 0.5 131 chrX 2578787 intergenic Pdfr +,Vha36-3 - chrX 2578852 intergenic Pdfr +,Vha36-3 - chrX 2578918 intergenic Vha36-3 -,Pdfr + chrX_6_2575001 chrX_2575001 RAL-304_100b 4090 chrX 2578802 2578841 chrX 2578898 2578958 16 111 8.5 8.5 8.5 1.7 156 chrX 2578802 intergenic Pdfr +,Vha36-3 - chrX 2578880 intergenic Vha36-3 -,Pdfr + chrX 2578958 intergenic Vha36-3 -,Pdfr + chrX_16_2575001 chrX_2575001 RAL-304_100b 4091 chrX 2610367 2610415 chrX 2617509 2617557 HMS-Beagle 9 7141 14.5 12.0 13.2 0.6 7190 chrX 2610367 intergenic CG8636 - chrX 2613962 intergenic not near genes chrX 2617557 intergenic Tsp3A - chrX_9_2610001 chrX_2610001 RAL-304_100b 4092 chrX 2664362 2664414 chrX 2665533 2665585 1360 29 1165 8.5 16.5 12.5 2.1 1223 chrX 2664362 intron sgg + chrX 2664974 intron sgg + chrX 2665585 intron sgg + chrX_29_2660001 chrX_2660001 RAL-304_100b 4093 chrX 2698921 2698944 chrX 2699046 2699087 5 136 76.0 76.0 76.0 0.1 166 chrX 2698921 exon CG2662 + chrX 2699004 intron CG2662 + chrX 2699087 exon CG2662 + chrX_5_2695001 chrX_2695001 RAL-304_100b 4094 chrX 2776233 2776239 chrX 2776338 2776348 4 110 27.0 11.5 19.2 0.2 115 chrX 2776233 intron kirre + chrX 2776290 intron kirre + chrX 2776348 intron kirre + chrX_4_2775001 chrX_2775001 RAL-304_100b 4095 chrX 2823769 2823780 chrX 2832342 2832353 roo 5 8573 29.0 12.5 20.8 0.2 8584 chrX 2823769 intron kirre + chrX 2828061 intron kirre + chrX 2832353 intron kirre + chrX_5_2825001 chrX_2825001 RAL-304_100b 4096 chrX 2844883 2844931 chrX 2852313 2852359 mdg1 27 7433 8.5 10.0 9.2 2.6 7476 chrX 2844883 intron kirre + chrX 2848621 intron kirre + chrX 2852359 intron kirre + chrX_27_2845001 chrX_2845001 RAL-304_100b 4097 chrX 2912172 2912172 chrX 16983076 16983077 5 14070904 64.5 46.0 55.2 0.1 14070905 chrX 2912172 intron kirre + chrX 9947624 intergenic not near genes chrX 16983077 intron CG45002 - chrX_5_9945001 chrX_9945001 RAL-304_100b 4098 chrX 2967164 2967185 chrX 2967299 2967300 14 132 19.5 15.0 17.2 0.8 136 chrX 2967164 intron,intron kirre +,rst - chrX 2967232 intron,intron kirre +,rst - chrX 2967300 intron,intron kirre +,rst - chrX_14_2965001 chrX_2965001 RAL-304_100b 4099 chrX 2967186 2967211 chrX 2967297 2967346 19 130 12.5 13.0 12.8 1.4 160 chrX 2967186 intron,intron kirre +,rst - chrX 2967266 intron,intron kirre +,rst - chrX 2967346 intron,intron kirre +,rst - chrX_19_2965001 chrX_2965001 RAL-304_100b 4100 chrX 3058009 3058049 chrX 3058269 3058315 pogo 20 265 12.0 9.5 10.8 1.7 306 chrX 3058009 intron kirre + chrX 3058162 intron kirre + chrX 3058315 intron kirre + chrX_20_3055001 chrX_3055001 RAL-304_100b 4101 chrX 3075605 3075644 chrX 3080941 3080976 Transpac 7 5335 9.0 1.0 5.0 1.2 5371 chrX 3075605 intron kirre + chrX 3078290 intron kirre + chrX 3080976 intron kirre + chrX_7_3075001 chrX_3075001 RAL-304_100b 4102 chrX 3082570 3082606 chrX 3082672 3082683 35 97 25.0 24.5 24.8 1.4 113 chrX 3082570 intron kirre + chrX 3082626 intron kirre + chrX 3082683 intron kirre + chrX_35_3080001 chrX_3080001 RAL-304_100b 4103 chrX 3103460 3103473 chrX 3103571 3103579 6 110 27.0 6.5 16.8 0.3 119 chrX 3103460 intron kirre + chrX 3103520 intron kirre + chrX 3103579 intron kirre + chrX_6_3100001 chrX_3100001 RAL-304_100b 4104 chrX 3116706 3116762 chrX 3117378 3117434 36 670 11.5 12.5 12.0 2.8 728 chrX 3116706 intron kirre + chrX 3117070 intron kirre + chrX 3117434 intron kirre + chrX_36_3115001 chrX_3115001 RAL-304_100b 4105 chrX 3120084 3120097 chrX 3120152 3120192 10 87 3.0 13.5 8.2 1.1 108 chrX 3120084 intron kirre + chrX 3120138 intron kirre + chrX 3120192 intron kirre + chrX_10_3120001 chrX_3120001 RAL-304_100b 4106 chrX 3178485 3178492 chrX 3186173 3186180 opus 4 7688 6.0 8.0 7.0 0.5 7695 chrX 3178485 intron dnc + chrX 3182332 intron dnc + chrX 3186180 intron dnc + chrX_4_3180001 chrX_3180001 RAL-304_100b 4107 chrX 3197739 3197797 chrX 3197877 3197937 24 137 9.5 6.5 8.0 2.7 198 chrX 3197739 intron dnc + chrX 3197838 intron dnc + chrX 3197937 intron dnc + chrX_24_3195001 chrX_3195001 RAL-304_100b 4108 chrX 3206487 3206496 chrX 3206570 3206600 7 100 3.0 13.5 8.2 0.8 113 chrX 3206487 intron dnc + chrX 3206544 intron dnc + chrX 3206600 intron dnc + chrX_7_3205001 chrX_3205001 RAL-304_100b 4109 chrX 3243615 3243652 chrX 3243724 3243759 13 111 7.0 7.5 7.2 1.6 144 chrX 3243615 intron dnc + chrX 3243687 intron dnc + chrX 3243759 intron dnc + chrX_13_3240001 chrX_3240001 RAL-304_100b 4110 chrX 3288105 3288107 chrX 9845361 9845361 Tirant 8 6557255 67.0 86.0 76.5 0.1 6557256 chrX 3288105 intron dnc + chrX 6566733 intron CG34417 + chrX 9845361 intron CG32698 + chrX_8_6565001 chrX_6565001 RAL-304_100b 4111 chrX 3295678 3295719 chrX 3295800 3295839 17 119 0.0 12.0 6.0 2.4 161 chrX 3295678 intron dnc + chrX 3295758 intron dnc + chrX 3295839 intron dnc + chrX_17_3295001 chrX_3295001 RAL-304_100b 4112 chrX 3306319 3306376 chrX 3306426 3306483 34 104 12.5 7.0 9.8 3.1 164 chrX 3306319 intron dnc + chrX 3306401 intron dnc + chrX 3306483 intron dnc + chrX_34_3305001 chrX_3305001 RAL-304_100b 4113 chrX 3415016 3415021 chrX 3421226 3421231 3S18 4 6210 2.0 9.5 5.8 0.6 6215 chrX 3415016 intron,intron CR44999 +,CG12535 - chrX 3418124 intron,intron CR44999 +,CG12535 - chrX 3421231 intron,intron CR44999 +,CG12535 - chrX_4_3415001 chrX_3415001 RAL-304_100b 4114 chrX 3415022 3415028 chrX 3421215 3421236 3S18 7 6205 2.0 9.5 5.8 1.0 6214 chrX 3415022 intron,intron CR44999 +,CG12535 - chrX 3418129 intron,intron CR44999 +,CG12535 - chrX 3421236 intron,intron CR44999 +,CG12535 - chrX_7_3415001 chrX_3415001 RAL-304_100b 4115 chrX 3415030 3415047 chrX 3421210 3421257 3S18 15 6206 1.5 9.0 5.2 2.4 6227 chrX 3415030 intron,intron CR44999 +,CG12535 - chrX 3418144 intron,intron CR44999 +,CG12535 - chrX 3421257 intron,intron CR44999 +,CG12535 - chrX_15_3415001 chrX_3415001 RAL-304_100b 4116 chrX 3436963 3436982 chrX 3437155 3437174 18 190 11.5 24.5 18.0 0.9 211 chrX 3436963 intron,intron CR44999 +,CG12535 - chrX 3437068 intron,intron CR44999 +,CG12535 - chrX 3437174 intron,intron CR44999 +,CG12535 - chrX_18_3435001 chrX_3435001 RAL-304_100b 4117 chrX 3459956 3460016 chrX 3460066 3460126 40 107 9.0 9.0 9.0 4.0 170 chrX 3459956 intron,intron CR44999 +,CG16782 - chrX 3460041 intron,5` UTR CR44999 +,CG16782 - chrX 3460126 intron,5` UTR CR44999 +,CG16782 - chrX_40_3460001 chrX_3460001 RAL-304_100b 4118 chrX 3493065 3493120 chrX 3502248 3502287 roo 42 9180 10.5 11.5 11.0 3.5 9222 chrX 3493065 intron,intron CR44999 +,Gas8 - chrX 3497676 intron,intron CR44999 +,Gas8 - chrX 3502287 intron,intron CR44999 +,Gas8 - chrX_42_3495001 chrX_3495001 RAL-304_100b 4119 chrX 3513736 3513744 chrX 3513844 3513852 7 108 29.5 6.5 18.0 0.4 116 chrX 3513736 intron,intron CR44999 +,CG32791 - chrX 3513794 intron,intron CR44999 +,CG32791 - chrX 3513852 intron,intron CR44999 +,CG32791 - chrX_7_3510001 chrX_3510001 RAL-304_100b 4120 chrX 3513745 3513790 chrX 3513843 3513898 20 107 11.5 6.0 8.8 2.0 153 chrX 3513745 intron,intron CR44999 +,CG32791 - chrX 3513822 intron,intron CR44999 +,CG32791 - chrX 3513898 intron,intron CR44999 +,CG32791 - chrX_20_3510001 chrX_3510001 RAL-304_100b 4121 chrX 3597528 3597584 chrX 3619721 3619762 roo 53 22190 17.5 11.0 14.2 3.5 22234 chrX 3597528 intron AstA-R1 + chrX 3608645 intron AstA-R1 + chrX 3619762 intron AstA-R1 + chrX_53_3605001 chrX_3605001 RAL-304_100b 4122 chrX 3630519 3630575 chrX 3630620 3630676 34 99 10.0 7.5 8.8 3.5 157 chrX 3630519 intron AstA-R1 + chrX 3630598 intron AstA-R1 + chrX 3630676 intron AstA-R1 + chrX_34_3630001 chrX_3630001 RAL-304_100b 4123 chrX 3636214 3636225 chrX 3636410 3636421 5 196 13.0 15.5 14.2 0.3 207 chrX 3636214 intron AstA-R1 + chrX 3636318 intron AstA-R1 + chrX 3636421 intron AstA-R1 + chrX_5_3635001 chrX_3635001 RAL-304_100b 4124 chrX 3657387 3657447 chrX 3657492 3657552 43 102 6.5 8.5 7.5 5.1 165 chrX 3657387 intron AstA-R1 + chrX 3657470 intron AstA-R1 + chrX 3657552 intron AstA-R1 + chrX_43_3655001 chrX_3655001 RAL-304_100b 4125 chrX 3703693 3703702 chrX 3703803 3703815 6 112 8.0 4.0 6.0 0.9 122 chrX 3703693 intergenic CR45102 + chrX 3703754 intergenic CR45102 + chrX 3703815 intergenic not near genes chrX_6_3700001 chrX_3700001 RAL-304_100b 4126 chrX 3713092 3713134 chrX 3713210 3713255 16 131 6.5 7.5 7.0 2.0 163 chrX 3713092 intron Rala - chrX 3713174 intron Rala - chrX 3713255 intron Rala - chrX_16_3710001 chrX_3710001 RAL-304_100b 4127 chrX 3726741 3726791 chrX 3730163 3730178 NOF 24 3416 13.0 0.0 6.5 3.2 3437 chrX 3726741 intron tlk + chrX 3728460 intron tlk + chrX 3730178 intron tlk + chrX_24_3725001 chrX_3725001 RAL-304_100b 4128 chrX 3752387 3752399 chrX 3764761 3764773 17.6 5 12374 32.0 31.0 31.5 0.2 12386 chrX 3752387 intron tlk + chrX 3758580 intron tlk + chrX 3764773 intron tlk + chrX_5_3755001 chrX_3755001 RAL-304_100b 4129 chrX 3842295 3842353 chrX 3842561 3842619 pogo 37 265 14.0 13.5 13.8 2.5 324 chrX 3842295 intron ec + chrX 3842457 intron ec + chrX 3842619 intron ec + chrX_37_3840001 chrX_3840001 RAL-304_100b 4130 chrX 3862797 3862811 chrX 3862906 3862920 14 108 24.5 11.0 17.8 0.7 123 chrX 3862797 intergenic yin - chrX 3862858 intergenic yin - chrX 3862920 intergenic yin - chrX_14_3860001 chrX_3860001 RAL-304_100b 4131 chrX 3862814 3862843 chrX 3862903 3862952 18 107 12.5 11.0 11.8 1.4 138 chrX 3862814 intergenic yin - chrX 3862883 intergenic yin - chrX 3862952 intergenic yin - chrX_18_3860001 chrX_3860001 RAL-304_100b 4132 chrX 3922141 3922148 chrX 3922401 3922447 10 282 0.0 17.0 8.5 1.1 306 chrX 3922141 intron CG42541 - chrX 3922294 intron CG42541 - chrX 3922447 intron CG42541 - chrX_10_3920001 chrX_3920001 RAL-304_100b 4133 chrX 3922155 3922157 chrX 3922455 3922457 4 300 0.0 42.0 21.0 0.2 302 chrX 3922155 intron CG42541 - chrX 3922306 intron CG42541 - chrX 3922457 intron CG42541 - chrX_4_3920001 chrX_3920001 RAL-304_100b 4134 chrX 3950774 3950832 chrX 3950878 3950922 33 102 9.5 8.5 9.0 3.3 148 chrX 3950774 intron Vap-33A + chrX 3950848 intron Vap-33A + chrX 3950922 intron Vap-33A + chrX_33_3950001 chrX_3950001 RAL-304_100b 4135 chrX 3986836 3986894 chrX 3994494 3994545 412 42 7655 8.5 13.5 11.0 3.5 7709 chrX 3986836 intergenic not near genes chrX 3990690 intergenic not near genes chrX 3994545 intergenic not near genes chrX_42_3990001 chrX_3990001 RAL-304_100b 4136 chrX 3994781 3994823 chrX 3994959 3994986 28 175 15.5 17.0 16.2 1.6 205 chrX 3994781 intergenic not near genes chrX 3994884 intergenic not near genes chrX 3994986 intergenic not near genes chrX_28_3990001 chrX_3990001 RAL-304_100b 4137 chrX 4029503 4029560 chrX 4029718 4029764 21 213 8.0 6.0 7.0 2.6 261 chrX 4029503 intergenic not near genes chrX 4029634 intergenic not near genes chrX 4029764 intergenic not near genes chrX_21_4025001 chrX_4025001 RAL-304_100b 4138 chrX 4047442 4047501 chrX 4047580 4047633 50 134 9.0 18.0 13.5 3.4 191 chrX 4047442 intergenic CR45482 - chrX 4047538 intergenic CR45482 - chrX 4047633 3` UTR CR45482 - chrX_50_4045001 chrX_4045001 RAL-304_100b 4139 chrX 4048474 4048524 chrX 4048575 4048625 35 97 15.0 9.0 12.0 2.7 151 chrX 4048474 3` UTR CR45482 - chrX 4048550 3` UTR CR45482 - chrX 4048625 3` UTR CR45482 - chrX_35_4045001 chrX_4045001 RAL-304_100b 4140 chrX 4067987 4067988 chrX 10754861 10754861 5 6686873 64.0 65.0 64.5 0.1 6686874 chrX 4067987 intergenic not near genes chrX 7411424 3` UTR CG42246 - chrX 10754861 intron Rph - chrX_5_7410001 chrX_7410001 RAL-304_100b 4141 chrX 4157871 4157922 chrX 4164949 4165000 297 42 7074 13.0 11.5 12.2 3.2 7129 chrX 4157871 intron Fas2 - chrX 4161436 intron Fas2 - chrX 4165000 intron Fas2 - chrX_42_4160001 chrX_4160001 RAL-304_100b 4142 chrX 4186821 4186821 chrX 9312363 9312364 10 5125542 66.0 70.0 68.0 0.1 5125543 chrX 4186821 intron Fas2 - chrX 6749592 intron CG14439 + chrX 9312364 intergenic not near genes chrX_10_6745001 chrX_6745001 RAL-304_100b 4143 chrX 4209908 4209956 chrX 4210022 4210071 4 115 0.0 12.5 6.2 0.6 163 chrX 4209908 intergenic not near genes chrX 4209990 intergenic not near genes chrX 4210071 intergenic not near genes chrX_4_4205001 chrX_4205001 RAL-304_100b 4144 chrX 4216315 4216338 chrX 4216419 4216442 12 102 18.0 10.5 14.2 0.8 127 chrX 4216315 intergenic not near genes chrX 4216378 intergenic CG15571 - chrX 4216442 intergenic CG15571 - chrX_12_4215001 chrX_4215001 RAL-304_100b 4145 chrX 4324366 4324412 chrX 4324468 4324514 23 101 6.5 12.5 9.5 2.2 148 chrX 4324366 intron norpA + chrX 4324440 intron norpA + chrX 4324514 intron norpA + chrX_23_4320001 chrX_4320001 RAL-304_100b 4146 chrX 4389377 4389379 chrX 12946233 12946234 12 8556857 14.0 38.0 26.0 0.4 8556857 chrX 4389377 intron CR32773 - chrX 8667806 intergenic not near genes chrX 12946234 3` UTR fne + chrX_12_8665001 chrX_8665001 RAL-304_100b 4147 chrX 4436444 4436497 chrX 4436534 4436605 9 105 12.5 6.5 9.5 0.9 161 chrX 4436444 intron,intron CR32773 -,bi + chrX 4436524 intron,intron CR32773 -,bi + chrX 4436605 intron,intron CR32773 -,bi + chrX_9_4435001 chrX_4435001 RAL-304_100b 4148 chrX 4515826 4515830 chrX 4515929 4515933 4 103 23.5 17.5 20.5 0.2 107 chrX 4515826 intron CR32773 - chrX 4515880 intron CR32773 - chrX 4515933 intron CR32773 - chrX_4_4515001 chrX_4515001 RAL-304_100b 4149 chrX 4515831 4515856 chrX 4515917 4515959 23 100 6.5 15.0 10.8 1.9 128 chrX 4515831 intron CR32773 - chrX 4515895 intron CR32773 - chrX 4515959 intron CR32773 - chrX_23_4515001 chrX_4515001 RAL-304_100b 4150 chrX 4598198 4598202 chrX 4598287 4598290 4 92 0.5 0.0 0.2 3.3 92 chrX 4598198 intron CR32773 - chrX 4598244 intron CR32773 - chrX 4598290 intron CR32773 - chrX_4_4595001 chrX_4595001 RAL-304_100b 4151 chrX 4617443 4617443 chrX 18826340 18826343 4 14208899 52.5 67.5 60.0 0.1 14208900 chrX 4617443 intergenic peb + chrX 11721893 exon Tango10 + chrX 18826343 intron CG42450 + chrX_4_11720001 chrX_11720001 RAL-304_100b 4152 chrX 4700368 4700377 chrX 4700734 4700745 jockey 6 368 27.0 9.5 18.2 0.3 377 chrX 4700368 3` UTR ctp + chrX 4700556 3` UTR ctp + chrX 4700745 3` UTR ctp + chrX_6_4700001 chrX_4700001 RAL-304_100b 4153 chrX 4700378 4700426 chrX 4700733 4700757 jockey 36 361 7.5 9.0 8.2 3.9 379 chrX 4700378 3` UTR ctp + chrX 4700568 3` UTR ctp + chrX 4700757 3` UTR ctp + chrX_36_4700001 chrX_4700001 RAL-304_100b 4154 chrX 4717332 4717387 chrX 4717873 4717933 52 541 15.0 17.0 16.0 3.1 601 chrX 4717332 intron Proc-R + chrX 4717632 intron Proc-R + chrX 4717933 intron Proc-R + chrX_52_4715001 chrX_4715001 RAL-304_100b 4155 chrX 4731794 4731809 chrX 4736912 4736922 jockey 9 5116 29.5 13.5 21.5 0.4 5128 chrX 4731794 intergenic not near genes chrX 4734358 intergenic not near genes chrX 4736922 intergenic not near genes chrX_9_4730001 chrX_4730001 RAL-304_100b 4156 chrX 4731812 4731826 chrX 4736910 4736922 jockey 4 5099 23.0 13.0 18.0 0.2 5110 chrX 4731812 intergenic not near genes chrX 4734367 intergenic not near genes chrX 4736922 intergenic not near genes chrX_4_4730001 chrX_4730001 RAL-304_100b 4157 chrX 4763242 4763281 chrX 4763738 4763794 Stalker4 24 510 18.0 16.5 17.2 1.3 552 chrX 4763242 intergenic not near genes chrX 4763518 intergenic not near genes chrX 4763794 intergenic not near genes chrX_24_4760001 chrX_4760001 RAL-304_100b 4158 chrX 4792356 4792392 chrX 4792814 4792849 jockey 24 456 18.5 16.0 17.2 1.3 493 chrX 4792356 intergenic not near genes chrX 4792602 intergenic not near genes chrX 4792849 intergenic not near genes chrX_24_4790001 chrX_4790001 RAL-304_100b 4159 chrX 4792398 4792404 chrX 4792811 4792816 jockey 7 443 13.0 15.0 14.0 0.5 418 chrX 4792398 intergenic not near genes chrX 4792607 intergenic not near genes chrX 4792816 intergenic not near genes chrX_7_4790001 chrX_4790001 RAL-304_100b 4160 chrX 4815023 4815036 chrX 4815153 4815166 7 129 0.0 12.0 6.0 1.0 143 chrX 4815023 intergenic not near genes chrX 4815094 intergenic not near genes chrX 4815166 intergenic not near genes chrX_7_4815001 chrX_4815001 RAL-304_100b 4161 chrX 4827947 4827986 chrX 4835343 4835382 Stalker4 12 7393 15.0 13.0 14.0 0.8 7435 chrX 4827947 intergenic not near genes chrX 4831664 intergenic not near genes chrX 4835382 intergenic not near genes chrX_12_4830001 chrX_4830001 RAL-304_100b 4162 chrX 4827988 4828002 chrX 4835338 4835364 Stalker4 32 7371 9.0 11.0 10.0 2.9 7376 chrX 4827988 intergenic not near genes chrX 4831676 intergenic not near genes chrX 4835364 intergenic not near genes chrX_32_4830001 chrX_4830001 RAL-304_100b 4163 chrX 4859857 4859911 chrX 4859991 4860045 42 130 9.5 15.5 12.5 3.1 188 chrX 4859857 intron CG42594 + chrX 4859951 intron CG42594 + chrX 4860045 intron CG42594 + chrX_42_4855001 chrX_4855001 RAL-304_100b 4164 chrX 4898240 4898282 chrX 4898343 4898383 15 98 0.0 13.5 6.8 1.9 143 chrX 4898240 intron CG42594 + chrX 4898312 intron CG42594 + chrX 4898383 intron CG42594 + chrX_15_4895001 chrX_4895001 RAL-304_100b 4165 chrX 4902627 4902678 chrX 4902725 4902772 45 97 9.0 15.5 12.2 3.4 145 chrX 4902627 intron CG42594 + chrX 4902700 intron CG42594 + chrX 4902772 intron CG42594 + chrX_45_4900001 chrX_4900001 RAL-304_100b 4166 chrX 4931325 4931338 chrX 4931444 4931457 4 119 92.0 70.5 81.2 0.0 132 chrX 4931325 intron CG44774 - chrX 4931391 intron CG44774 - chrX 4931457 intron CG44774 - chrX_4_4930001 chrX_4930001 RAL-304_100b 4167 chrX 4931342 4931376 chrX 4931439 4931495 21 113 85.5 67.5 76.5 0.3 153 chrX 4931342 intron CG44774 - chrX 4931418 intron CG44774 - chrX 4931495 intron CG44774 - chrX_21_4930001 chrX_4930001 RAL-304_100b 4168 chrX 4990034 4990075 chrX 4997273 4997314 roo 24 7238 10.0 10.5 10.2 2.1 7280 chrX 4990034 intron CR44833 - chrX 4993674 intron CR44833 - chrX 4997314 intron CR44833 - chrX_24_4990001 chrX_4990001 RAL-304_100b 4169 chrX 5096253 5096273 chrX 5103843 5103863 springer 17 7587 32.0 21.5 26.8 0.6 7610 chrX 5096253 intron,intron CG15465 +,rg + chrX 5100058 intron,intron CG15465 +,rg + chrX 5103863 intron,intron CG15465 +,rg + chrX_17_5100001 chrX_5100001 RAL-304_100b 4170 chrX 5096277 5096305 chrX 5103838 5103859 springer 29 7577 17.0 18.5 17.8 1.5 7582 chrX 5096277 intron,intron CG15465 +,rg + chrX 5100068 intron,intron CG15465 +,rg + chrX 5103859 intron,intron CG15465 +,rg + chrX_29_5100001 chrX_5100001 RAL-304_100b 4171 chrX 5120638 5120662 chrX 5120771 5120803 8 138 3.5 12.5 8.0 0.9 165 chrX 5120638 intron,intron CG15465 +,rg + chrX 5120720 intron,intron CG15465 +,rg + chrX 5120803 intron,intron CG15465 +,rg + chrX_8_5120001 chrX_5120001 RAL-304_100b 4172 chrX 5162228 5162250 chrX 5162466 5162488 9 238 18.5 11.0 14.8 0.6 260 chrX 5162228 intron,intron CG15465 +,rg + chrX 5162358 intron,intron CG15465 +,rg + chrX 5162488 intron,intron CG15465 +,rg + chrX_9_5160001 chrX_5160001 RAL-304_100b 4173 chrX 5162252 5162261 chrX 5162465 5162499 6 230 14.0 11.0 12.5 0.4 247 chrX 5162252 intron,intron CG15465 +,rg + chrX 5162376 intron,intron CG15465 +,rg + chrX 5162499 intron,intron CG15465 +,rg + chrX_6_5160001 chrX_5160001 RAL-304_100b 4174 chrX 5223683 5223728 chrX 5223786 5223831 29 98 8.0 19.5 13.8 2.0 148 chrX 5223683 intron,intron CG15465 +,rg + chrX 5223757 intron,intron CG15465 +,rg + chrX 5223831 intron,intron CG15465 +,rg + chrX_29_5220001 chrX_5220001 RAL-304_100b 4175 chrX 5264031 5264077 chrX 5264138 5264192 31 111 9.5 16.5 13.0 2.2 161 chrX 5264031 intergenic not near genes chrX 5264112 intergenic not near genes chrX 5264192 intergenic not near genes chrX_31_5260001 chrX_5260001 RAL-304_100b 4176 chrX 5272797 5272851 chrX 5272908 5272948 28 109 7.5 7.5 7.5 3.3 151 chrX 5272797 intergenic not near genes chrX 5272872 intergenic not near genes chrX 5272948 intergenic not near genes chrX_28_5270001 chrX_5270001 RAL-304_100b 4177 chrX 5338684 5338734 chrX 5339962 5339991 jockey 34 1272 11.0 14.5 12.8 2.5 1307 chrX 5338684 intergenic not near genes chrX 5339338 intergenic not near genes chrX 5339991 intergenic SK + chrX_34_5335001 chrX_5335001 RAL-304_100b 4178 chrX 5345381 5345397 chrX 5345508 5345564 18 160 1.0 8.0 4.5 3.3 183 chrX 5345381 intron SK + chrX 5345472 intron SK + chrX 5345564 intron SK + chrX_18_5345001 chrX_5345001 RAL-304_100b 4179 chrX 5349254 5349271 chrX 5349356 5349373 8 101 23.5 7.5 15.5 0.5 119 chrX 5349254 intron SK + chrX 5349314 intron SK + chrX 5349373 intron SK + chrX_8_5345001 chrX_5345001 RAL-304_100b 4180 chrX 5349273 5349278 chrX 5349353 5349380 7 95 19.5 7.0 13.2 0.5 107 chrX 5349273 intron SK + chrX 5349326 intron SK + chrX 5349380 intron SK + chrX_7_5345001 chrX_5345001 RAL-304_100b 4181 chrX 5349280 5349299 chrX 5349365 5349401 10 99 15.0 12.5 13.8 0.7 121 chrX 5349280 intron SK + chrX 5349340 intron SK + chrX 5349401 intron SK + chrX_10_5345001 chrX_5345001 RAL-304_100b 4182 chrX 5349301 5349309 chrX 5349361 5349411 4 92 11.0 11.0 11.0 0.3 110 chrX 5349301 intron SK + chrX 5349356 intron SK + chrX 5349411 intron SK + chrX_4_5345001 chrX_5345001 RAL-304_100b 4183 chrX 5350277 5350279 chrX 5350411 5350413 4 134 40.0 24.5 32.2 0.1 136 chrX 5350277 intron SK + chrX 5350345 intron SK + chrX 5350413 intron SK + chrX_4_5350001 chrX_5350001 RAL-304_100b 4184 chrX 5350282 5350287 chrX 5350416 5350421 4 134 37.0 26.5 31.8 0.1 139 chrX 5350282 intron SK + chrX 5350352 intron SK + chrX 5350421 intron SK + chrX_4_5350001 chrX_5350001 RAL-304_100b 4185 chrX 5350288 5350298 chrX 5350422 5350427 6 132 32.0 29.0 30.5 0.2 139 chrX 5350288 intron SK + chrX 5350358 intron SK + chrX 5350427 intron SK + chrX_6_5350001 chrX_5350001 RAL-304_100b 4186 chrX 5350299 5350314 chrX 5350418 5350437 21 128 24.0 26.5 25.2 0.8 138 chrX 5350299 intron SK + chrX 5350368 intron SK + chrX 5350437 intron SK + chrX_21_5350001 chrX_5350001 RAL-304_100b 4187 chrX 5456569 5456615 chrX 5456704 5456756 14 137 8.5 9.0 8.8 1.4 187 chrX 5456569 intron SPR + chrX 5456662 intron SPR + chrX 5456756 intron SPR + chrX_14_5455001 chrX_5455001 RAL-304_100b 4188 chrX 5473560 5473619 chrX 5473661 5473682 52 90 12.5 8.5 10.5 4.5 122 chrX 5473560 intron SPR + chrX 5473621 intron SPR + chrX 5473682 intron SPR + chrX_52_5470001 chrX_5470001 RAL-304_100b 4189 chrX 5524819 5524829 chrX 5528707 5528717 412 4 3888 22.0 6.5 14.2 0.3 3898 chrX 5524819 intergenic snoRNA:Psi28S-3342 - chrX 5526768 intergenic not near genes chrX 5528717 intergenic Vsx2 - chrX_4_5525001 chrX_5525001 RAL-304_100b 4190 chrX 5524830 5524853 chrX 5528703 5528741 412 10 3883 16.5 6.5 11.5 0.8 3911 chrX 5524830 intergenic snoRNA:Psi28S-3342 - chrX 5526786 intergenic not near genes chrX 5528741 intergenic Vsx2 - chrX_10_5525001 chrX_5525001 RAL-304_100b 4191 chrX 5566773 5566778 chrX 5566874 5566883 6 104 20.5 37.5 29.0 0.2 110 chrX 5566773 intergenic not near genes chrX 5566828 intergenic not near genes chrX 5566883 intergenic not near genes chrX_6_5565001 chrX_5565001 RAL-304_100b 4192 chrX 5566779 5566787 chrX 5566856 5566892 11 101 22.0 32.0 27.0 0.4 113 chrX 5566779 intergenic not near genes chrX 5566836 intergenic not near genes chrX 5566892 intergenic not near genes chrX_11_5565001 chrX_5565001 RAL-304_100b 4193 chrX 5727400 5727416 chrX 5732164 5732179 Doc 11 4763 10.0 7.5 8.8 1.1 4779 chrX 5727400 intron CG32758 - chrX 5729790 intron CG32758 - chrX 5732179 intron CG32758 - chrX_11_5725001 chrX_5725001 RAL-304_100b 4194 chrX 5792564 5792575 chrX 5792708 5792711 7 144 54.0 12.0 33.0 0.2 147 chrX 5792564 exon CG12239 + chrX 5792638 exon CG12239 + chrX 5792711 exon CG12239 + chrX_7_5790001 chrX_5790001 RAL-304_100b 4195 chrX 5798853 5798892 chrX 5799025 5799079 35 183 1.0 11.0 6.0 5.0 226 chrX 5798853 intergenic not near genes chrX 5798966 intergenic not near genes chrX 5799079 intergenic not near genes chrX_35_5795001 chrX_5795001 RAL-304_100b 4196 chrX 5883784 5883838 chrX 5884050 5884103 pogo 39 265 6.5 6.5 6.5 5.2 319 chrX 5883784 intron CR45668 - chrX 5883944 intron CR45668 - chrX 5884103 intron CR45668 - chrX_39_5880001 chrX_5880001 RAL-304_100b 4197 chrX 5884141 5884190 chrX 5884407 5884456 pogo 28 264 13.5 10.0 11.8 2.2 315 chrX 5884141 intron CR45668 - chrX 5884298 intron CR45668 - chrX 5884456 intron CR45668 - chrX_28_5880001 chrX_5880001 RAL-304_100b 4198 chrX 5966790 5966833 chrX 5966882 5966936 41 98 12.5 13.0 12.8 3.0 146 chrX 5966790 intron Grip + chrX 5966863 intron Grip + chrX 5966936 intron Grip + chrX_41_5965001 chrX_5965001 RAL-304_100b 4199 chrX 5989335 5989390 chrX 5989433 5989455 26 86 12.5 14.5 13.5 1.8 120 chrX 5989335 5` UTR CG5966 + chrX 5989395 5` UTR CG5966 + chrX 5989455 5` UTR CG5966 + chrX_26_5985001 chrX_5985001 RAL-304_100b 4200 chrX 6100477 6100528 chrX 6100621 6100676 28 145 8.0 9.5 8.8 2.9 199 chrX 6100477 intron Nep1 + chrX 6100576 intron Nep1 + chrX 6100676 intron Nep1 + chrX_28_6100001 chrX_6100001 RAL-304_100b 4201 chrX 6118674 6118733 chrX 6118781 6118830 39 104 5.0 13.5 9.2 3.8 156 chrX 6118674 intron Ca-alpha1T - chrX 6118752 intron Ca-alpha1T - chrX 6118830 intron Ca-alpha1T - chrX_39_6115001 chrX_6115001 RAL-304_100b 4202 chrX 6171578 6171586 chrX 6179020 6179029 Quasimodo 6 7449 21.0 12.5 16.8 0.3 7451 chrX 6171578 intron Ca-alpha1T - chrX 6175304 intron Ca-alpha1T - chrX 6179029 intron Ca-alpha1T - chrX_6_6175001 chrX_6175001 RAL-304_100b 4203 chrX 6171587 6171610 chrX 6179014 6179068 Quasimodo 17 7441 13.0 11.0 12.0 1.3 7481 chrX 6171587 intron Ca-alpha1T - chrX 6175328 intron Ca-alpha1T - chrX 6179068 intron Ca-alpha1T - chrX_17_6175001 chrX_6175001 RAL-304_100b 4204 chrX 6215320 6215372 chrX 6215428 6215473 48 106 1.0 18.0 9.5 4.6 153 chrX 6215320 intergenic not near genes chrX 6215396 intergenic not near genes chrX 6215473 intergenic not near genes chrX_48_6215001 chrX_6215001 RAL-304_100b 4205 chrX 6315412 6315468 chrX 6315586 6315642 44 170 8.0 13.5 10.8 3.7 230 chrX 6315412 intron CG15894 + chrX 6315527 intron CG15894 + chrX 6315642 intron CG15894 + chrX_44_6315001 chrX_6315001 RAL-304_100b 4206 chrX 6335211 6335221 chrX 6337726 6337756 Tirant 15 2527 0.5 10.5 5.5 2.3 2545 chrX 6335211 intergenic not near genes chrX 6336484 intergenic not near genes chrX 6337756 intergenic CG3842 + chrX_15_6335001 chrX_6335001 RAL-304_100b 4207 chrX 6335223 6335243 chrX 6337725 6337778 Tirant 21 2527 0.0 10.5 5.2 3.4 2555 chrX 6335223 intergenic not near genes chrX 6336500 intergenic not near genes chrX 6337778 5` UTR CG3842 + chrX_21_6335001 chrX_6335001 RAL-304_100b 4208 chrX 6344844 6344859 chrX 15529918 15529919 4 9185068 0.0 34.0 17.0 0.2 9185075 chrX 6344844 intergenic not near genes chrX 10937382 intron Myo10A + chrX 15529919 intron Ac13E - chrX_4_10935001 chrX_10935001 RAL-304_100b 4209 chrX 6392856 6392864 chrX 6397639 6397654 Doc 6 4788 31.5 12.0 21.8 0.3 4798 chrX 6392856 intergenic not near genes chrX 6395255 intergenic not near genes chrX 6397654 intergenic not near genes chrX_6_6395001 chrX_6395001 RAL-304_100b 4210 chrX 6392866 6392882 chrX 6397635 6397672 Doc 22 4785 18.5 10.0 14.2 1.4 4806 chrX 6392866 intergenic not near genes chrX 6395269 intergenic not near genes chrX 6397672 intergenic not near genes chrX_22_6395001 chrX_6395001 RAL-304_100b 4211 chrX 6392883 6392903 chrX 6397632 6397653 Doc 10 4776 11.0 9.0 10.0 0.9 4770 chrX 6392883 intergenic not near genes chrX 6395268 intergenic not near genes chrX 6397653 intergenic not near genes chrX_10_6395001 chrX_6395001 RAL-304_100b 4212 chrX 6445318 6445334 chrX 6451101 6451117 297 8 5783 6.5 17.5 12.0 0.6 5799 chrX 6445318 intron CG42340 - chrX 6448218 intron CG42340 - chrX 6451117 intron CG42340 - chrX_8_6445001 chrX_6445001 RAL-304_100b 4213 chrX 6487955 6487982 chrX 6488062 6488087 11 105 20.0 19.0 19.5 0.5 132 chrX 6487955 intron CG42340 - chrX 6488021 intron CG42340 - chrX 6488087 intron CG42340 - chrX_11_6485001 chrX_6485001 RAL-304_100b 4214 chrX 6539890 6539938 chrX 6540017 6540018 17 118 8.0 16.0 12.0 1.3 128 chrX 6539890 intergenic not near genes chrX 6539954 intergenic not near genes chrX 6540018 intergenic not near genes chrX_17_6535001 chrX_6535001 RAL-304_100b 4215 chrX 6540813 6540849 chrX 7333159 7333161 4 792336 18.0 25.5 21.8 0.2 792348 chrX 6540813 5` UTR CG34417 + chrX 6936987 intron CG14431 + chrX 7333161 intron,intron CR44357 -,CG1677 - chrX_4_6935001 chrX_6935001 RAL-304_100b 4216 chrX 6562796 6562810 chrX 6571303 6571317 Tirant 7 8506 29.5 24.5 27.0 0.2 8521 chrX 6562796 intron CG34417 + chrX 6567056 intron CG34417 + chrX 6571317 intron CG34417 + chrX_7_6565001 chrX_6565001 RAL-304_100b 4217 chrX 6562812 6562849 chrX 6571299 6571337 Tirant 42 8499 14.0 22.0 18.0 2.2 8525 chrX 6562812 intron CG34417 + chrX 6567074 intron CG34417 + chrX 6571337 intron CG34417 + chrX_42_6565001 chrX_6565001 RAL-304_100b 4218 chrX 6591830 6591874 chrX 6591940 6591984 16 110 10.5 0.0 5.2 2.6 154 chrX 6591830 intron Pat1 + chrX 6591907 intron Pat1 + chrX 6591984 intron Pat1 + chrX_16_6590001 chrX_6590001 RAL-304_100b 4219 chrX 6592039 6592089 chrX 6592260 6592310 28 219 1.5 7.5 4.5 5.1 271 chrX 6592039 intron Pat1 + chrX 6592174 intron Pat1 + chrX 6592310 intron Pat1 + chrX_28_6590001 chrX_6590001 RAL-304_100b 4220 chrX 6618442 6618475 chrX 6618545 6618573 20 102 16.5 28.0 22.2 0.9 131 chrX 6618442 intron pigs + chrX 6618508 intron pigs + chrX 6618573 intron pigs + chrX_20_6615001 chrX_6615001 RAL-304_100b 4221 chrX 6629760 6629793 chrX 6629872 6629905 28 111 11.0 11.5 11.2 2.3 145 chrX 6629760 intron pigs + chrX 6629832 intron pigs + chrX 6629905 intron pigs + chrX_28_6625001 chrX_6625001 RAL-304_100b 4222 chrX 6729613 6729671 chrX 6729969 6730027 30 354 8.5 11.0 9.8 2.8 414 chrX 6729613 intron CG3168 - chrX 6729820 intron CG3168 - chrX 6730027 intron CG3168 - chrX_30_6725001 chrX_6725001 RAL-304_100b 4223 chrX 6733420 6733434 chrX 6733534 6733540 8 111 32.0 30.0 31.0 0.2 120 chrX 6733420 intron,intron CG3168 -,CR43461 + chrX 6733480 intron,intron CG3168 -,CR43461 + chrX 6733540 intron,intron CG3168 -,CR43461 + chrX_8_6730001 chrX_6730001 RAL-304_100b 4224 chrX 6733436 6733673 chrX 6733530 6733781 27 104 31.0 29.0 30.0 0.9 345 chrX 6733436 intron,intron CG3168 -,CR43461 + chrX 6733608 intron,intron CG3168 -,CR43461 + chrX 6733781 intron,intron CG3168 -,CR43461 + chrX_27_6730001 chrX_6730001 RAL-304_100b 4225 chrX 6792067 6792088 chrX 6792175 6792204 10 115 14.0 11.0 12.5 0.7 137 chrX 6792067 intron C3G - chrX 6792136 intron C3G - chrX 6792204 intron C3G - chrX_10_6790001 chrX_6790001 RAL-304_100b 4226 chrX 6865765 6865797 chrX 6865871 6865906 18 105 17.5 21.5 19.5 0.9 141 chrX 6865765 intron CG14434 - chrX 6865836 intron CG14434 - chrX 6865906 intron CG14434 - chrX_18_6865001 chrX_6865001 RAL-304_100b 4227 chrX 6897281 6897288 chrX 6897605 6897610 5 324 0.0 12.0 6.0 0.7 329 chrX 6897281 intergenic not near genes chrX 6897446 intergenic not near genes chrX 6897610 intergenic not near genes chrX_5_6895001 chrX_6895001 RAL-304_100b 4228 chrX 6897574 6897582 chrX 7243795 7243803 5 346221 12.0 15.0 13.5 0.3 346229 chrX 6897574 intergenic not near genes chrX 7070688 exon CG4607 + chrX 7243803 intron CR44357 - chrX_5_7070001 chrX_7070001 RAL-304_100b 4229 chrX 6897663 6897699 chrX 6897798 6897834 26 134 10.0 10.5 10.2 2.3 171 chrX 6897663 intergenic not near genes chrX 6897748 intergenic not near genes chrX 6897834 intergenic not near genes chrX_26_6895001 chrX_6895001 RAL-304_100b 4230 chrX 6901353 6901386 chrX 6901454 6901487 18 99 13.0 16.5 14.8 1.1 134 chrX 6901353 intergenic not near genes chrX 6901420 intergenic not near genes chrX 6901487 intergenic not near genes chrX_18_6900001 chrX_6900001 RAL-304_100b 4231 chrX 6950383 6950393 chrX 6950484 6950493 12 104 35.5 15.5 25.5 0.5 110 chrX 6950383 intron CG14431 + chrX 6950438 intron CG14431 + chrX 6950493 intron CG14431 + chrX_12_6950001 chrX_6950001 RAL-304_100b 4232 chrX 6950394 6950433 chrX 6950483 6950524 35 99 14.0 14.5 14.2 2.3 130 chrX 6950394 intron CG14431 + chrX 6950459 intron CG14431 + chrX 6950524 intron CG14431 + chrX_35_6950001 chrX_6950001 RAL-304_100b 4233 chrX 6989485 6989532 chrX 6989590 6989639 35 110 5.0 14.5 9.8 3.2 154 chrX 6989485 intron ogre - chrX 6989562 intron ogre - chrX 6989639 intron ogre - chrX_35_6985001 chrX_6985001 RAL-304_100b 4234 chrX 7023580 7023631 chrX 7030995 7031036 Tabor 37 7411 14.0 14.5 14.2 2.4 7456 chrX 7023580 intron CG12541 - chrX 7027308 intron CG12541 - chrX 7031036 intron CG12541 - chrX_37_7025001 chrX_7025001 RAL-304_100b 4235 chrX 7125222 7125277 chrX 7134406 7134431 roo 52 9181 4.5 15.0 9.8 4.8 9209 chrX 7125222 intergenic not near genes chrX 7129826 intergenic not near genes chrX 7134431 intergenic not near genes chrX_52_7125001 chrX_7125001 RAL-304_100b 4236 chrX 7245732 7245732 chrX 17712390 17712405 4 10466667 63.5 35.5 49.5 0.1 10466673 chrX 7245732 intron CR44357 - chrX 12479068 intergenic not near genes chrX 17712405 intron CG42684 + chrX_4_12475001 chrX_12475001 RAL-304_100b 4237 chrX 7293782 7293782 chrX 13057299 13057301 13 5763519 55.0 26.5 40.8 0.3 5763519 chrX 7293782 intron,intron CR44357 -,CG1677 - chrX 10175542 intron,intron CR44894 -,CG43902 + chrX 13057301 intron rad + chrX_13_10175001 chrX_10175001 RAL-304_100b 4238 chrX 7294490 7294506 chrX 7294613 7294629 14 121 41.0 14.5 27.8 0.5 139 chrX 7294490 intron,intron CR44357 -,CG1677 - chrX 7294560 intron,intron CR44357 -,CG1677 - chrX 7294629 intron,intron CR44357 -,CG1677 - chrX_14_7290001 chrX_7290001 RAL-304_100b 4239 chrX 7294509 7294539 chrX 7294612 7294662 31 115 23.5 14.0 18.8 1.6 153 chrX 7294509 intron,intron CR44357 -,CG1677 - chrX 7294586 intron,intron CR44357 -,CG1677 - chrX 7294662 intron,intron CR44357 -,CG1677 - chrX_31_7290001 chrX_7290001 RAL-304_100b 4240 chrX 7345174 7345215 chrX 7345291 7345326 21 112 13.0 9.0 11.0 1.8 152 chrX 7345174 intron,intron CR44357 -,CG1677 - chrX 7345250 intron,intron CR44357 -,CG1677 - chrX 7345326 intron,intron CR44357 -,CG1677 - chrX_21_7345001 chrX_7345001 RAL-304_100b 4241 chrX 7357247 7357255 chrX 7357348 7357356 7 101 25.5 30.0 27.8 0.2 109 chrX 7357247 intron,intron CR44357 -,CG1677 - chrX 7357302 intron,intron CR44357 -,CG1677 - chrX 7357356 intron,intron CR44357 -,CG1677 - chrX_7_7355001 chrX_7355001 RAL-304_100b 4242 chrX 7357257 7357267 chrX 7357337 7357358 10 96 23.5 29.0 26.2 0.4 101 chrX 7357257 intron,intron CR44357 -,CG1677 - chrX 7357308 intron,intron CR44357 -,CG1677 - chrX 7357358 intron,intron CR44357 -,CG1677 - chrX_10_7355001 chrX_7355001 RAL-304_100b 4243 chrX 7401685 7401745 chrX 7401786 7401789 23 97 9.0 8.0 8.5 2.4 104 chrX 7401685 intron,intron CR44357 -,CG1677 - chrX 7401737 intron,intron,3` UTR CR44357 -,CG1677 -,CG15035 - chrX 7401789 intron,intron,3` UTR CR44357 -,CG1677 -,CG15035 - chrX_23_7400001 chrX_7400001 RAL-304_100b 4244 chrX 7447190 7447193 chrX 7447267 7447301 5 97 14.0 16.5 15.2 0.3 111 chrX 7447190 5` UTR CR45533 + chrX 7447246 5` UTR CR45533 + chrX 7447301 5` UTR CR45533 + chrX_5_7445001 chrX_7445001 RAL-304_100b 4245 chrX 7470202 7470222 chrX 7470315 7470335 9 112 13.0 14.0 13.5 0.6 133 chrX 7470202 intergenic not near genes chrX 7470268 intergenic not near genes chrX 7470335 intergenic not near genes chrX_9_7470001 chrX_7470001 RAL-304_100b 4246 chrX 7582312 7582343 chrX 7582414 7582439 18 97 28.5 17.0 22.8 0.8 127 chrX 7582312 intergenic not near genes chrX 7582376 intergenic not near genes chrX 7582439 intergenic not near genes chrX_18_7580001 chrX_7580001 RAL-304_100b 4247 chrX 7679910 7680132 chrX 7680188 7680239 52 164 14.5 30.5 22.5 2.2 329 chrX 7679910 intergenic CR45666 -,CR45667 - chrX 7680074 3` UTR CR45666 - chrX 7680239 3` UTR CR45666 - chrX_52_7680001 chrX_7680001 RAL-304_100b 4248 chrX 7679852 7679858 chrX 7680445 7680451 5 594 67.0 94.0 80.5 0.1 599 chrX 7679852 intergenic CR45666 -,CR45667 - chrX 7680152 3` UTR CR45666 - chrX 7680451 3` UTR CR45666 - chrX_5_7680001 chrX_7680001 RAL-304_100b 4249 chrX 7679851 7679907 chrX 7680452 7680500 47 598 51.5 92.0 71.8 0.6 649 chrX 7679851 intergenic CR45666 -,CR45667 - chrX 7680176 3` UTR CR45666 - chrX 7680500 3` UTR CR45666 - chrX_47_7680001 chrX_7680001 RAL-304_100b 4250 chrX 7702514 7702515 chrX 7702606 7702630 4 104 1.5 16.5 9.0 0.4 116 chrX 7702514 intron CHES-1-like - chrX 7702572 intron CHES-1-like - chrX 7702630 intron CHES-1-like - chrX_4_7700001 chrX_7700001 RAL-304_100b 4251 chrX 7702516 7702526 chrX 7702603 7702637 13 110 1.0 15.5 8.2 1.4 121 chrX 7702516 intron CHES-1-like - chrX 7702576 intron CHES-1-like - chrX 7702637 intron CHES-1-like - chrX_13_7700001 chrX_7700001 RAL-304_100b 4252 chrX 7702882 7702893 chrX 7703346 7703357 jockey 5 461 27.5 13.5 20.5 0.2 475 chrX 7702882 intron CHES-1-like - chrX 7703120 intron CHES-1-like - chrX 7703357 intron CHES-1-like - chrX_5_7700001 chrX_7700001 RAL-304_100b 4253 chrX 7702895 7702927 chrX 7703343 7703351 jockey 33 459 15.5 12.5 14.0 2.2 456 chrX 7702895 intron CHES-1-like - chrX 7703123 intron CHES-1-like - chrX 7703351 intron CHES-1-like - chrX_33_7700001 chrX_7700001 RAL-304_100b 4254 chrX 7720531 7720573 chrX 7720638 7720680 16 102 6.5 8.0 7.2 2.0 149 chrX 7720531 intergenic not near genes chrX 7720606 intergenic not near genes chrX 7720680 intergenic not near genes chrX_16_7720001 chrX_7720001 RAL-304_100b 4255 chrX 7720575 7720583 chrX 7720635 7720690 5 82 5.0 7.0 6.0 0.7 115 chrX 7720575 intergenic not near genes chrX 7720632 intergenic not near genes chrX 7720690 intergenic not near genes chrX_5_7720001 chrX_7720001 RAL-304_100b 4256 chrX 7737104 7737145 chrX 7737241 7737265 27 135 9.0 9.5 9.2 2.6 161 chrX 7737104 5` UTR Tom40 + chrX 7737184 intron Tom40 + chrX 7737265 intron Tom40 + chrX_27_7735001 chrX_7735001 RAL-304_100b 4257 chrX 7832414 7832465 chrX 7832523 7832569 31 112 5.5 11.0 8.2 3.4 155 chrX 7832414 intron CG1402 + chrX 7832492 intron CG1402 + chrX 7832569 intron CG1402 + chrX_31_7830001 chrX_7830001 RAL-304_100b 4258 chrX 7845704 7845759 chrX 7847214 7847273 hopper2 52 1514 8.5 9.5 9.0 5.2 1569 chrX 7845704 intergenic not near genes chrX 7846488 intergenic not near genes chrX 7847273 intergenic not near genes chrX_52_7845001 chrX_7845001 RAL-304_100b 4259 chrX 7858756 7858805 chrX 7858857 7858891 19 100 10.5 0.0 5.2 3.1 135 chrX 7858756 3` UTR CG1409 + chrX 7858824 intergenic CG1409 + chrX 7858891 intergenic CG1409 + chrX_19_7855001 chrX_7855001 RAL-304_100b 4260 chrX 7960853 7960908 chrX 7960967 7961022 32 113 5.0 12.0 8.5 3.4 169 chrX 7960853 intron,5` UTR sws -,CR45620 + chrX 7960938 intron sws - chrX 7961022 intron sws - chrX_32_7960001 chrX_7960001 RAL-304_100b 4261 chrX 8024627 8024636 chrX 8024728 8024737 4 100 49.5 7.0 28.2 0.1 110 chrX 8024627 intron Tbh + chrX 8024682 intron Tbh + chrX 8024737 intron Tbh + chrX_4_8020001 chrX_8020001 RAL-304_100b 4262 chrX 8024672 8024673 chrX 8024721 8024735 5 67 33.5 8.5 21.0 0.2 63 chrX 8024672 intron Tbh + chrX 8024704 intron Tbh + chrX 8024735 intron Tbh + chrX_5_8020001 chrX_8020001 RAL-304_100b 4263 chrX 8092269 8092322 chrX 8092371 8092402 39 105 14.0 7.0 10.5 3.4 133 chrX 8092269 intron Ubc-E2H - chrX 8092336 intron Ubc-E2H - chrX 8092402 intron Ubc-E2H - chrX_39_8090001 chrX_8090001 RAL-304_100b 4264 chrX 8330403 8330434 chrX 8330510 8330541 4 107 6.5 8.0 7.2 0.5 138 chrX 8330403 intron nAChRalpha3 - chrX 8330472 intron nAChRalpha3 - chrX 8330541 intron nAChRalpha3 - chrX_4_8330001 chrX_8330001 RAL-304_100b 4265 chrX 8364809 8364867 chrX 8365238 8365296 BS 31 426 5.5 10.5 8.0 3.4 487 chrX 8364809 intron nAChRalpha3 - chrX 8365052 intron nAChRalpha3 - chrX 8365296 intron nAChRalpha3 - chrX_31_8365001 chrX_8365001 RAL-304_100b 4266 chrX 8371128 8371179 chrX 8371315 8371358 15 174 13.0 3.0 8.0 1.7 230 chrX 8371128 intergenic not near genes chrX 8371243 intergenic not near genes chrX 8371358 intergenic not near genes chrX_15_8370001 chrX_8370001 RAL-304_100b 4267 chrX 8371691 8371746 chrX 8371804 8371859 34 112 7.5 14.0 10.8 2.9 168 chrX 8371691 intergenic not near genes chrX 8371775 intergenic not near genes chrX 8371859 intergenic not near genes chrX_34_8370001 chrX_8370001 RAL-304_100b 4268 chrX 8377894 8377898 chrX 8377996 8378000 7 102 22.0 17.5 19.8 0.3 106 chrX 8377894 intergenic not near genes chrX 8377947 intergenic not near genes chrX 8378000 intergenic not near genes chrX_7_8375001 chrX_8375001 RAL-304_100b 4269 chrX 8397278 8397319 chrX 8397379 8397415 12 100 4.0 0.0 2.0 4.0 137 chrX 8397278 3` UTR CG15345 - chrX 8397346 3` UTR CG15345 - chrX 8397415 3` UTR CG15345 - chrX_12_8395001 chrX_8395001 RAL-304_100b 4270 chrX 8506004 8506060 chrX 8506106 8506157 28 99 6.5 9.5 8.0 3.1 153 chrX 8506004 intron CG33181 + chrX 8506080 intron CG33181 + chrX 8506157 intron CG33181 + chrX_28_8505001 chrX_8505001 RAL-304_100b 4271 chrX 8506504 8506560 chrX 8506737 8506793 28 231 7.0 10.0 8.5 2.9 289 chrX 8506504 intron CG33181 + chrX 8506648 intron CG33181 + chrX 8506793 intron CG33181 + chrX_28_8505001 chrX_8505001 RAL-304_100b 4272 chrX 8509094 8509150 chrX 8509196 8509252 15 102 7.5 4.0 5.8 2.2 158 chrX 8509094 intron CG33181 + chrX 8509173 intron CG33181 + chrX 8509252 intron CG33181 + chrX_15_8505001 chrX_8505001 RAL-304_100b 4273 chrX 8544129 8544162 chrX 8544233 8544265 13 102 4.5 7.0 5.8 1.9 136 chrX 8544129 intron Nrg + chrX 8544197 intron Nrg + chrX 8544265 intron Nrg + chrX_13_8540001 chrX_8540001 RAL-304_100b 4274 chrX 8743244 8743264 chrX 8743347 8743367 9 103 8.5 19.0 13.8 0.6 123 chrX 8743244 intergenic not near genes chrX 8743306 intergenic not near genes chrX 8743367 intergenic not near genes chrX_9_8740001 chrX_8740001 RAL-304_100b 4275 chrX 8772222 8772251 chrX 8772326 8772355 19 103 18.0 26.5 22.2 0.8 133 chrX 8772222 intron Lim1 - chrX 8772288 intron Lim1 - chrX 8772355 intron Lim1 - chrX_19_8770001 chrX_8770001 RAL-304_100b 4276 chrX 8894985 8895002 chrX 8895089 8895111 8 109 8.0 12.0 10.0 0.7 126 chrX 8894985 intron Moe - chrX 8895048 intron Moe - chrX 8895111 intron Moe - chrX_8_8895001 chrX_8895001 RAL-304_100b 4277 chrX 8913494 8913544 chrX 8913628 8913638 24 127 8.0 10.0 9.0 2.4 144 chrX 8913494 intron rdgA + chrX 8913566 intron rdgA + chrX 8913638 intron rdgA + chrX_24_8910001 chrX_8910001 RAL-304_100b 4278 chrX 8922305 8922362 chrX 8922764 8922821 jockey 47 456 14.0 14.0 14.0 3.1 516 chrX 8922305 intron rdgA + chrX 8922563 intron rdgA + chrX 8922821 intron rdgA + chrX_47_8920001 chrX_8920001 RAL-304_100b 4279 chrX 8927569 8927593 chrX 8929852 8929877 NOF 13 2291 21.5 11.5 16.5 0.7 2308 chrX 8927569 intron rdgA + chrX 8928723 intron rdgA + chrX 8929877 intron rdgA + chrX_13_8925001 chrX_8925001 RAL-304_100b 4280 chrX 8927596 8927616 chrX 8929850 8929889 NOF 12 2282 14.5 10.5 12.5 0.9 2293 chrX 8927596 intron rdgA + chrX 8928742 intron rdgA + chrX 8929889 intron rdgA + chrX_12_8925001 chrX_8925001 RAL-304_100b 4281 chrX 8934580 8934601 chrX 8934681 8934702 10 100 9.5 7.0 8.2 1.1 122 chrX 8934580 intron rdgA + chrX 8934641 intron rdgA + chrX 8934702 intron rdgA + chrX_10_8930001 chrX_8930001 RAL-304_100b 4282 chrX 8948732 8948788 chrX 8956267 8956323 roo 21 7529 4.5 8.5 6.5 2.8 7591 chrX 8948732 intron rdgA + chrX 8952528 intron rdgA + chrX 8956323 intron rdgA + chrX_21_8950001 chrX_8950001 RAL-304_100b 4283 chrX 8968839 8968860 chrX 8968941 8968962 6 103 27.5 25.5 26.5 0.2 123 chrX 8968839 intron rdgA + chrX 8968900 intron rdgA + chrX 8968962 intron rdgA + chrX_6_8965001 chrX_8965001 RAL-304_100b 4284 chrX 8971866 8971884 chrX 8971970 8971978 8 103 14.5 7.0 10.8 0.7 112 chrX 8971866 intron rdgA + chrX 8971922 intron rdgA + chrX 8971978 intron rdgA + chrX_8_8970001 chrX_8970001 RAL-304_100b 4285 chrX 8971898 8971908 chrX 8971963 8972012 10 100 11.0 8.0 9.5 1.0 114 chrX 8971898 intron rdgA + chrX 8971955 intron rdgA + chrX 8972012 intron rdgA + chrX_10_8970001 chrX_8970001 RAL-304_100b 4286 chrX 9062716 9062758 chrX 9062804 9062811 18 97 8.5 0.5 4.5 3.3 95 chrX 9062716 intron CG15365 - chrX 9062764 intron CG15365 - chrX 9062811 intron CG15365 - chrX_18_9060001 chrX_9060001 RAL-304_100b 4287 chrX 9218060 9218080 chrX 9218176 9218190 11 114 19.0 15.5 17.2 0.6 130 chrX 9218060 3` UTR t - chrX 9218125 3` UTR t - chrX 9218190 3` UTR t - chrX_11_9215001 chrX_9215001 RAL-304_100b 4288 chrX 9337917 9337972 chrX 9338034 9338088 46 114 10.0 10.5 10.2 4.1 171 chrX 9337917 intron CG34449 - chrX 9338002 intron CG34449 - chrX 9338088 exon CG34449 - chrX_46_9335001 chrX_9335001 RAL-304_100b 4289 chrX 9508116 9508138 chrX 9509659 9509681 jockey 18 1542 25.5 19.5 22.5 0.8 1565 chrX 9508116 intron CG32700 - chrX 9508898 intron CG32700 - chrX 9509681 intron CG32700 - chrX_18_9505001 chrX_9505001 RAL-304_100b 4290 chrX 9508139 9508164 chrX 9509654 9509690 jockey 26 1535 15.5 18.0 16.8 1.5 1551 chrX 9508139 intron CG32700 - chrX 9508914 intron CG32700 - chrX 9509690 intron CG32700 - chrX_26_9505001 chrX_9505001 RAL-304_100b 4291 chrX 9529214 9529230 chrX 9529372 9529386 8 158 21.0 8.0 14.5 0.5 172 chrX 9529214 intron CG32700 - chrX 9529300 intron CG32700 - chrX 9529386 intron CG32700 - chrX_8_9525001 chrX_9525001 RAL-304_100b 4292 chrX 9529236 9529265 chrX 9529368 9529423 17 154 9.5 7.5 8.5 1.8 187 chrX 9529236 intron CG32700 - chrX 9529330 intron CG32700 - chrX 9529423 intron CG32700 - chrX_17_9525001 chrX_9525001 RAL-304_100b 4293 chrX 9530388 9530414 chrX 9530481 9530539 14 122 3.5 8.0 5.8 2.1 151 chrX 9530388 intron CG32700 - chrX 9530464 intron CG32700 - chrX 9530539 intron CG32700 - chrX_14_9530001 chrX_9530001 RAL-304_100b 4294 chrX 9575780 9575822 chrX 9576116 9576171 mdg3 32 342 17.0 13.5 15.2 2.0 391 chrX 9575780 intron,exon CG32699 -,CG42395 - chrX 9575976 intron,intron CG32699 -,CG42395 - chrX 9576171 intron,5` UTR CG32699 -,CG42395 - chrX_32_9575001 chrX_9575001 RAL-304_100b 4295 chrX 9732378 9732382 chrX 9732485 9732489 4 107 2.5 17.5 10.0 0.4 111 chrX 9732378 intron Sp1 + chrX 9732434 intron Sp1 + chrX 9732489 intron Sp1 + chrX_4_9730001 chrX_9730001 RAL-304_100b 4296 chrX 9758023 9758068 chrX 9758133 9758178 23 109 6.0 0.5 3.2 5.5 155 chrX 9758023 intergenic not near genes chrX 9758100 intergenic not near genes chrX 9758178 intergenic not near genes chrX_23_9755001 chrX_9755001 RAL-304_100b 4297 chrX 9791848 9791852 chrX 9791970 9791973 5 122 23.0 23.0 23.0 0.2 125 chrX 9791848 intron CG32698 + chrX 9791910 intron CG32698 + chrX 9791973 intron CG32698 + chrX_5_9790001 chrX_9790001 RAL-304_100b 4298 chrX 9791853 9791896 chrX 9791969 9792007 38 116 8.0 22.5 15.2 2.3 154 chrX 9791853 intron CG32698 + chrX 9791930 intron CG32698 + chrX 9792007 intron CG32698 + chrX_38_9790001 chrX_9790001 RAL-304_100b 4299 chrX 9839326 9839375 chrX 9839419 9839467 9 101 0.5 8.5 4.5 1.6 141 chrX 9839326 intron CG32698 + chrX 9839396 intron CG32698 + chrX 9839467 intron CG32698 + chrX_9_9835001 chrX_9835001 RAL-304_100b 4300 chrX 9845361 9845361 chrX 12946233 12946234 4 3100873 75.5 38.0 56.8 0.1 3100873 chrX 9845361 intron CG32698 + chrX 11395798 intron dlg1 + chrX 12946234 3` UTR fne + chrX_4_11395001 chrX_11395001 RAL-304_100b 4301 chrX 9845361 9845361 chrX 14544906 14544908 8 4699546 75.5 63.5 69.5 0.1 4699547 chrX 9845361 intron CG32698 + chrX 12195134 intron Ten-a + chrX 14544908 intergenic not near genes chrX_8_12195001 chrX_12195001 RAL-304_100b 4302 chrX 9847470 9847528 chrX 9847585 9847634 30 113 8.5 12.5 10.5 2.6 164 chrX 9847470 intron CG32698 + chrX 9847552 intron CG32698 + chrX 9847634 intron CG32698 + chrX_30_9845001 chrX_9845001 RAL-304_100b 4303 chrX 10138195 10138243 chrX 10145724 10145772 412 26 7529 10.0 10.0 10.0 2.4 7577 chrX 10138195 intron,intron RhoU +,CR44894 - chrX 10141984 intron,intron RhoU +,CR44894 - chrX 10145772 intron,intron RhoU +,CR44894 - chrX_26_10140001 chrX_10140001 RAL-304_100b 4304 chrX 10151900 10151928 chrX 10152002 10152026 15 100 19.0 12.0 15.5 0.9 126 chrX 10151900 intron CR44894 - chrX 10151963 intron CR44894 - chrX 10152026 intron CR44894 - chrX_15_10150001 chrX_10150001 RAL-304_100b 4305 chrX 10151931 10151936 chrX 10152001 10152010 9 88 16.5 11.5 14.0 0.6 79 chrX 10151931 intron CR44894 - chrX 10151970 intron CR44894 - chrX 10152010 intron CR44894 - chrX_9_10150001 chrX_10150001 RAL-304_100b 4306 chrX 10154260 10154313 chrX 10154361 10154401 32 97 12.5 10.0 11.2 2.6 141 chrX 10154260 intron,intron CR44894 -,CG12645 + chrX 10154330 intron,intron CR44894 -,CG12645 + chrX 10154401 intron,exon CR44894 -,CG12645 + chrX_32_10150001 chrX_10150001 RAL-304_100b 4307 chrX 10216822 10216840 chrX 10216928 10216944 5 105 32.5 24.0 28.2 0.2 122 chrX 10216822 3` UTR l(1)G0230 + chrX 10216883 3` UTR l(1)G0230 + chrX 10216944 3` UTR l(1)G0230 + chrX_5_10215001 chrX_10215001 RAL-304_100b 4308 chrX 10216841 10216852 chrX 10216925 10216958 8 102 27.0 21.0 24.0 0.3 117 chrX 10216841 3` UTR l(1)G0230 + chrX 10216900 3` UTR l(1)G0230 + chrX 10216958 3` UTR l(1)G0230 + chrX_8_10215001 chrX_10215001 RAL-304_100b 4309 chrX 10267297 10267334 chrX 10276472 10276508 roo 8 9175 4.0 6.5 5.2 1.3 9211 chrX 10267297 3` UTR alpha-Man-I - chrX 10271902 intron alpha-Man-I - chrX 10276508 3` UTR alpha-Man-I - chrX_8_10270001 chrX_10270001 RAL-304_100b 4310 chrX 10317537 10317576 chrX 10317639 10317676 21 102 0.5 4.0 2.2 6.6 139 chrX 10317537 intron alpha-Man-I - chrX 10317606 intron alpha-Man-I - chrX 10317676 intron alpha-Man-I - chrX_21_10315001 chrX_10315001 RAL-304_100b 4311 chrX 10330667 10330674 chrX 10330872 10330882 6 208 38.0 43.5 40.8 0.1 215 chrX 10330667 exon CG15306 - chrX 10330774 exon CG15306 - chrX 10330882 exon CG15306 - chrX_6_10330001 chrX_10330001 RAL-304_100b 4312 chrX 10348776 10348825 chrX 10356366 10356379 springer 12 7585 9.5 14.0 11.8 0.9 7603 chrX 10348776 intergenic snoRNA:U3:9B + chrX 10352578 intergenic not near genes chrX 10356379 intergenic l(1)G0289 - chrX_12_10350001 chrX_10350001 RAL-304_100b 4313 chrX 10431310 10431366 chrX 10431415 10431471 24 105 7.5 14.5 11.0 2.0 161 chrX 10431310 intron CG32683 - chrX 10431390 intron CG32683 - chrX 10431471 intron CG32683 - chrX_24_10430001 chrX_10430001 RAL-304_100b 4314 chrX 10451059 10451117 chrX 10451167 10451225 21 105 4.0 3.0 3.5 4.7 166 chrX 10451059 intron CG32683 - chrX 10451142 intron CG32683 - chrX 10451225 intron CG32683 - chrX_21_10450001 chrX_10450001 RAL-304_100b 4315 chrX 10550311 10550330 chrX 10550414 10550433 11 103 16.0 5.5 10.8 0.9 122 chrX 10550311 intron spri - chrX 10550372 intron spri - chrX 10550433 intron spri - chrX_11_10550001 chrX_10550001 RAL-304_100b 4316 chrX 10550331 10550363 chrX 10550412 10550466 23 102 7.0 5.0 6.0 3.3 135 chrX 10550331 intron spri - chrX 10550398 intron spri - chrX 10550466 intron spri - chrX_23_10550001 chrX_10550001 RAL-304_100b 4317 chrX 10550832 10550871 chrX 10552324 10552363 hobo 28 1490 20.5 14.0 17.2 1.5 1531 chrX 10550832 intron spri - chrX 10551598 intron spri - chrX 10552363 intron spri - chrX_28_10550001 chrX_10550001 RAL-304_100b 4318 chrX 10550873 10550888 chrX 10552318 10552365 hobo 13 1483 15.5 11.5 13.5 0.9 1492 chrX 10550873 intron spri - chrX 10551619 intron spri - chrX 10552365 intron spri - chrX_13_10550001 chrX_10550001 RAL-304_100b 4319 chrX 10686031 10686082 chrX 10691193 10691237 roo 33 5160 9.0 12.5 10.8 2.8 5206 chrX 10686031 intron X11Lbeta + chrX 10688634 intron X11Lbeta + chrX 10691237 intron X11Lbeta + chrX_33_10685001 chrX_10685001 RAL-304_100b 4320 chrX 10710124 10710183 chrX 10710430 10710488 51 302 5.0 11.5 8.2 5.5 364 chrX 10710124 3` UTR X11Lbeta + chrX 10710306 3` UTR X11Lbeta + chrX 10710488 3` UTR X11Lbeta + chrX_51_10710001 chrX_10710001 RAL-304_100b 4321 chrX 9845361 9845361 chrX 10759277 10759278 5 913917 75.5 66.0 70.8 0.1 913917 chrX 9845361 intron CG32698 + chrX 10302320 intron alpha-Man-I - chrX 10759278 intergenic not near genes chrX_5_10300001 chrX_10300001 RAL-304_100b 4322 chrX 10772649 10772698 chrX 10772757 10772806 Tirant 39 102 15.5 5.0 10.2 3.5 157 chrX 10772649 intron CG15211 + chrX 10772728 intron CG15211 + chrX 10772806 intron CG15211 + chrX_39_10770001 chrX_10770001 RAL-304_100b 4323 chrX 10803008 10803048 chrX 10803118 10803158 29 107 18.5 12.5 15.5 1.8 150 chrX 10803008 intron Imp - chrX 10803083 intron Imp - chrX 10803158 intron Imp - chrX_29_10800001 chrX_10800001 RAL-304_100b 4324 chrX 10911947 10911969 chrX 10912077 10912099 21 130 31.0 19.0 25.0 0.8 152 chrX 10911947 intron CG43901 + chrX 10912023 intron CG43901 + chrX 10912099 intron CG43901 + chrX_21_10910001 chrX_10910001 RAL-304_100b 4325 chrX 10911970 10911995 chrX 10912071 10912125 15 123 16.0 14.0 15.0 0.9 155 chrX 10911970 intron CG43901 + chrX 10912048 intron CG43901 + chrX 10912125 intron CG43901 + chrX_15_10910001 chrX_10910001 RAL-304_100b 4326 chrX 11095975 11096025 chrX 11103102 11103152 HMS-Beagle 15 7127 9.0 17.5 13.2 1.1 7177 chrX 11095975 intergenic not near genes chrX 11099564 intergenic not near genes chrX 11103152 intron CG42249 + chrX_15_11095001 chrX_11095001 RAL-304_100b 4327 chrX 11109417 11109417 chrX 12946232 12946235 12 1836817 30.0 38.0 34.0 0.3 1836818 chrX 11109417 intron Hsp60 + chrX 12027826 exon Usp7 - chrX 12946235 3` UTR fne + chrX_12_12025001 chrX_12025001 RAL-304_100b 4328 chrX 11142001 11142068 chrX 11142061 11142169 16 96 0.0 0.0 0.0 16.0 168 chrX 11142001 intergenic CG15199 - chrX 11142085 intergenic CG15199 -,CG15202 + chrX 11142169 intergenic CG15199 -,CG15202 + chrX_16_11140001 chrX_11140001 RAL-304_100b 4329 chrX 11165886 11165900 chrX 11166243 11166256 9 357 7.0 15.5 11.2 0.7 370 chrX 11165886 intergenic not near genes chrX 11166071 intergenic not near genes chrX 11166256 intergenic not near genes chrX_9_11165001 chrX_11165001 RAL-304_100b 4330 chrX 11184226 11184268 chrX 11189327 11189368 flea 22 5098 23.5 9.0 16.2 1.3 5142 chrX 11184226 intergenic not near genes chrX 11186797 intergenic not near genes chrX 11189368 intergenic not near genes chrX_22_11185001 chrX_11185001 RAL-304_100b 4331 chrX 11184277 11184280 chrX 11189326 11189381 flea 5 5090 17.0 9.0 13.0 0.4 5104 chrX 11184277 intergenic not near genes chrX 11186829 intergenic not near genes chrX 11189381 intergenic not near genes chrX_5_11185001 chrX_11185001 RAL-304_100b 4332 chrX 11205267 11205321 chrX 11205368 11205422 32 99 7.5 11.5 9.5 3.0 155 chrX 11205267 intergenic not near genes chrX 11205344 intergenic not near genes chrX 11205422 intergenic not near genes chrX_32_11205001 chrX_11205001 RAL-304_100b 4333 chrX 11254144 11254199 chrX 11254280 11254311 42 133 12.0 20.5 16.2 2.4 167 chrX 11254144 intron CG44422 - chrX 11254228 intron CG44422 - chrX 11254311 intron CG44422 - chrX_42_11250001 chrX_11250001 RAL-304_100b 4334 chrX 11291669 11291723 chrX 11291770 11291790 27 94 7.5 13.5 10.5 2.3 121 chrX 11291669 intron CG44422 - chrX 11291730 intron CG44422 - chrX 11291790 intron CG44422 - chrX_27_11290001 chrX_11290001 RAL-304_100b 4335 chrX 11312034 11312077 chrX 11319412 11319445 Stalker2 28 7369 21.0 16.0 18.5 1.4 7411 chrX 11312034 intergenic not near genes chrX 11315740 intergenic not near genes chrX 11319445 intergenic not near genes chrX_28_11315001 chrX_11315001 RAL-304_100b 4336 chrX 11312079 11312090 chrX 11319410 11319438 Stalker2 16 7363 12.0 14.0 13.0 1.1 7359 chrX 11312079 intergenic not near genes chrX 11315758 intergenic not near genes chrX 11319438 intergenic not near genes chrX_16_11315001 chrX_11315001 RAL-304_100b 4337 chrX 11499089 11499137 chrX 11499192 11499238 33 100 12.5 14.5 13.5 2.3 149 chrX 11499089 intron Drak + chrX 11499164 intron Drak + chrX 11499238 intron Drak + chrX_33_11495001 chrX_11495001 RAL-304_100b 4338 chrX 11535019 11535046 chrX 11541514 11541541 Burdock 17 6493 17.0 15.0 16.0 1.0 6522 chrX 11535019 intron Drak + chrX 11538280 intron Drak + chrX 11541541 intron Drak + chrX_17_11535001 chrX_11535001 RAL-304_100b 4339 chrX 11544219 11544268 chrX 11544352 11544401 40 120 10.0 16.5 13.2 2.8 182 chrX 11544219 intron Drak + chrX 11544310 intron Drak + chrX 11544401 intron Drak + chrX_40_11540001 chrX_11540001 RAL-304_100b 4340 chrX 11633392 11633443 chrX 11640471 11640522 297 31 7078 13.5 11.5 12.5 2.3 7130 chrX 11633392 intron Ptp10D + chrX 11636957 intron Ptp10D + chrX 11640522 intron Ptp10D + chrX_31_11635001 chrX_11635001 RAL-304_100b 4341 chrX 11645088 11645136 chrX 11648283 11648324 NOF 17 3193 5.5 9.5 7.5 2.0 3236 chrX 11645088 intron Ptp10D + chrX 11646706 intron Ptp10D + chrX 11648324 intron Ptp10D + chrX_17_11645001 chrX_11645001 RAL-304_100b 4342 chrX 11685743 11685771 chrX 11685866 11685887 14 117 33.0 17.5 25.2 0.5 144 chrX 11685743 intron bif + chrX 11685815 intron bif + chrX 11685887 intron bif + chrX_14_11685001 chrX_11685001 RAL-304_100b 4343 chrX 11719851 11719896 chrX 11719956 11720001 21 103 8.5 13.5 11.0 1.8 150 chrX 11719851 3` UTR prtp + chrX 11719926 intergenic prtp +,Tango10 + chrX 11720001 intergenic prtp +,Tango10 + chrX_21_11715001 chrX_11715001 RAL-304_100b 4344 chrX 11761989 11762006 chrX 11762086 11762099 16 100 15.0 19.0 17.0 0.9 110 chrX 11761989 intron m + chrX 11762044 intron m + chrX 11762099 intron m + chrX_16_11760001 chrX_11760001 RAL-304_100b 4345 chrX 11798993 11799035 chrX 11799104 11799146 21 108 15.0 6.0 10.5 1.8 153 chrX 11798993 intron CkIIbeta + chrX 11799070 intron CkIIbeta + chrX 11799146 intron CkIIbeta + chrX_21_11795001 chrX_11795001 RAL-304_100b 4346 chrX 11804659 11804664 chrX 11804788 11804793 4 129 12.5 12.0 12.2 0.3 134 chrX 11804659 intron Hsc70-3 - chrX 11804726 intron Hsc70-3 - chrX 11804793 intron Hsc70-3 - chrX_4_11800001 chrX_11800001 RAL-304_100b 4347 chrX 11804665 11804689 chrX 11804779 11804818 16 122 5.5 8.0 6.8 2.1 153 chrX 11804665 intron Hsc70-3 - chrX 11804742 intron Hsc70-3 - chrX 11804818 intron Hsc70-3 - chrX_16_11800001 chrX_11800001 RAL-304_100b 4348 chrX 11839000 11839067 chrX 11839283 11839339 24 270 0.0 9.5 4.8 4.1 339 chrX 11839000 intergenic not near genes chrX 11839170 intergenic Cyp28c1 + chrX 11839339 intergenic Cyp28c1 + chrX_24_11835001 chrX_11835001 RAL-304_100b 4349 chrX 12038061 12038117 chrX 12038280 12038330 51 215 12.0 19.0 15.5 3.1 269 chrX 12038061 intergenic not near genes chrX 12038196 intergenic not near genes chrX 12038330 intergenic not near genes chrX_51_12035001 chrX_12035001 RAL-304_100b 4350 chrX 12136411 12136452 chrX 12136922 12136963 21 508 12.0 10.0 11.0 1.8 552 chrX 12136411 intron Ten-a + chrX 12136687 intron Ten-a + chrX 12136963 intron Ten-a + chrX_21_12135001 chrX_12135001 RAL-304_100b 4351 chrX 12168114 12168139 chrX 12173581 12173603 I-element 12 5467 18.0 13.0 15.5 0.7 5489 chrX 12168114 intron Ten-a + chrX 12170858 intron Ten-a + chrX 12173603 intron Ten-a + chrX_12_12170001 chrX_12170001 RAL-304_100b 4352 chrX 12168141 12168154 chrX 12173573 12173621 I-element 14 5461 17.5 11.5 14.5 0.9 5480 chrX 12168141 intron Ten-a + chrX 12170881 intron Ten-a + chrX 12173621 intron Ten-a + chrX_14_12170001 chrX_12170001 RAL-304_100b 4353 chrX 12194911 12194966 chrX 12195054 12195089 34 136 6.5 9.0 7.8 3.9 178 chrX 12194911 intron Ten-a + chrX 12195000 intron Ten-a + chrX 12195089 intron Ten-a + chrX_34_12195001 chrX_12195001 RAL-304_100b 4354 chrX 12202744 12202800 chrX 12202853 12202882 18 106 5.5 9.5 7.5 2.1 138 chrX 12202744 intron Ten-a + chrX 12202813 intron Ten-a + chrX 12202882 intron Ten-a + chrX_18_12200001 chrX_12200001 RAL-304_100b 4355 chrX 12241165 12241224 chrX 12241272 12241321 46 100 9.5 12.0 10.8 3.9 156 chrX 12241165 intron Ten-a + chrX 12241243 intron Ten-a + chrX 12241321 intron Ten-a + chrX_46_12240001 chrX_12240001 RAL-304_100b 4356 chrX 12246950 12246990 chrX 12247063 12247103 6 112 2.5 7.5 5.0 1.0 153 chrX 12246950 intron Ten-a + chrX 12247026 intron Ten-a + chrX 12247103 intron Ten-a + chrX_6_12245001 chrX_12245001 RAL-304_100b 4357 chrX 12301948 12301988 chrX 12303264 12303268 X-element 18 1321 6.5 2.0 4.2 3.5 1320 chrX 12301948 intron Ten-a + chrX 12302608 intron Ten-a + chrX 12303268 intron Ten-a + chrX_18_12300001 chrX_12300001 RAL-304_100b 4358 chrX 12348166 12348178 chrX 12348274 12348286 17 108 36.5 13.5 25.0 0.7 120 chrX 12348166 intergenic not near genes chrX 12348226 intergenic not near genes chrX 12348286 intergenic not near genes chrX_17_12345001 chrX_12345001 RAL-304_100b 4359 chrX 12348179 12348187 chrX 12348272 12348290 10 104 31.5 13.0 22.2 0.4 111 chrX 12348179 intergenic not near genes chrX 12348234 intergenic not near genes chrX 12348290 intergenic not near genes chrX_10_12345001 chrX_12345001 RAL-304_100b 4360 chrX 12350756 12350797 chrX 12350852 12350881 27 102 14.5 0.0 7.2 3.3 125 chrX 12350756 intergenic not near genes chrX 12350818 intergenic not near genes chrX 12350881 intergenic not near genes chrX_27_12350001 chrX_12350001 RAL-304_100b 4361 chrX 12375465 12375503 chrX 12375588 12375626 29 119 22.5 11.0 16.8 1.6 161 chrX 12375465 intergenic Ir11a - chrX 12375546 intergenic Ir11a - chrX 12375626 exon Ir11a - chrX_29_12375001 chrX_12375001 RAL-304_100b 4362 chrX 12381833 12381898 chrX 12385771 12385818 flea 12 3933 0.0 11.0 5.5 1.8 3985 chrX 12381833 intergenic not near genes chrX 12383826 intergenic not near genes chrX 12385818 intergenic not near genes chrX_12_12380001 chrX_12380001 RAL-304_100b 4363 chrX 12392776 12392828 chrX 12392876 12392934 47 101 10.0 11.0 10.5 4.1 158 chrX 12392776 intergenic not near genes chrX 12392855 intergenic not near genes chrX 12392934 intergenic not near genes chrX_47_12390001 chrX_12390001 RAL-304_100b 4364 chrX 12428319 12428326 chrX 12428456 12428463 4 137 33.0 15.0 24.0 0.2 144 chrX 12428319 intergenic not near genes chrX 12428391 intergenic not near genes chrX 12428463 intergenic not near genes chrX_4_12425001 chrX_12425001 RAL-304_100b 4365 chrX 12428330 12428376 chrX 12428455 12428473 45 129 15.5 14.5 15.0 2.8 143 chrX 12428330 intergenic not near genes chrX 12428402 intergenic not near genes chrX 12428473 intergenic not near genes chrX_45_12425001 chrX_12425001 RAL-304_100b 4366 chrX 12435343 12435362 chrX 12435446 12435465 13 102 10.0 15.5 12.8 0.9 122 chrX 12435343 exon Pkcdelta + chrX 12435404 intron Pkcdelta + chrX 12435465 intron Pkcdelta + chrX_13_12435001 chrX_12435001 RAL-304_100b 4367 chrX 12442069 12442081 chrX 12442173 12442188 5 106 12.5 5.5 9.0 0.5 119 chrX 12442069 intron Pkcdelta + chrX 12442128 intron Pkcdelta + chrX 12442188 intron Pkcdelta + chrX_5_12440001 chrX_12440001 RAL-304_100b 4368 chrX 12442084 12442113 chrX 12442165 12442199 5 98 6.0 4.5 5.2 0.8 115 chrX 12442084 intron Pkcdelta + chrX 12442142 intron Pkcdelta + chrX 12442199 intron Pkcdelta + chrX_5_12440001 chrX_12440001 RAL-304_100b 4369 chrX 12465448 12465483 chrX 12465549 12465569 25 97 14.5 2.0 8.2 2.7 121 chrX 12465448 exon CG42258 + chrX 12465508 intron CG42258 + chrX 12465569 intron CG42258 + chrX_25_12465001 chrX_12465001 RAL-304_100b 4370 chrX 12489166 12489176 chrX 12489367 12489377 8 201 3.5 26.5 15.0 0.5 211 chrX 12489166 3` UTR Cpr11A + chrX 12489272 3` UTR Cpr11A + chrX 12489377 3` UTR Cpr11A + chrX_8_12485001 chrX_12485001 RAL-304_100b 4371 chrX 12489178 12489184 chrX 12489381 12489385 4 202 3.5 31.0 17.2 0.2 207 chrX 12489178 3` UTR Cpr11A + chrX 12489282 3` UTR Cpr11A + chrX 12489385 3` UTR Cpr11A + chrX_4_12485001 chrX_12485001 RAL-304_100b 4372 chrX 12511325 12511351 chrX 12511434 12511460 8 108 0.0 21.5 10.8 0.7 135 chrX 12511325 intron CG2556 + chrX 12511392 intron CG2556 + chrX 12511460 intron CG2556 + chrX_8_12510001 chrX_12510001 RAL-304_100b 4373 chrX 12528839 12528888 chrX 12528940 12528961 14 97 5.5 2.5 4.0 2.8 122 chrX 12528839 intron CG43921 - chrX 12528900 intron CG43921 - chrX 12528961 intron CG43921 - chrX_14_12525001 chrX_12525001 RAL-304_100b 4374 chrX 12705369 12705418 chrX 12705466 12705524 15 102 5.0 2.5 3.8 3.1 155 chrX 12705369 intron Smr - chrX 12705446 intron Smr - chrX 12705524 intron Smr - chrX_15_12705001 chrX_12705001 RAL-304_100b 4375 chrX 12752253 12752308 chrX 12752365 12752410 43 109 10.5 13.0 11.8 3.4 157 chrX 12752253 5` UTR CR44619 + chrX 12752332 5` UTR CR44619 + chrX 12752410 5` UTR CR44619 + chrX_43_12750001 chrX_12750001 RAL-304_100b 4376 chrX 12837573 12837633 chrX 12837879 12837939 42 304 9.0 13.5 11.2 3.4 366 chrX 12837573 intron Pde9 - chrX 12837756 intron Pde9 - chrX 12837939 intron Pde9 - chrX_42_12835001 chrX_12835001 RAL-304_100b 4377 chrX 12853307 12853365 chrX 12853417 12853455 41 108 9.5 0.5 5.0 6.8 148 chrX 12853307 intron Pde9 - chrX 12853381 intron Pde9 - chrX 12853455 intron Pde9 - chrX_41_12850001 chrX_12850001 RAL-304_100b 4378 chrX 12859060 12859117 chrX 12859165 12859222 26 104 7.0 9.5 8.2 2.8 162 chrX 12859060 intron Pde9 - chrX 12859141 intron Pde9 - chrX 12859222 intron Pde9 - chrX_26_12855001 chrX_12855001 RAL-304_100b 4379 chrX 12912609 12912654 chrX 12912731 12912761 11 121 1.5 8.5 5.0 1.8 152 chrX 12912609 5` UTR CR45625 + chrX 12912685 5` UTR CR45625 + chrX 12912761 5` UTR CR45625 + chrX_11_12910001 chrX_12910001 RAL-304_100b 4380 chrX 12930574 12930585 chrX 12937714 12937726 HMS-Beagle 11 7141 10.5 17.5 14.0 0.7 7152 chrX 12930574 intron fne + chrX 12934150 intron fne + chrX 12937726 intron fne + chrX_11_12930001 chrX_12930001 RAL-304_100b 4381 chrX 12930586 12930611 chrX 12937713 12937740 HMS-Beagle 12 7136 7.0 17.5 12.2 0.9 7154 chrX 12930586 intron fne + chrX 12934163 intron fne + chrX 12937740 intron fne + chrX_12_12930001 chrX_12930001 RAL-304_100b 4382 chrX 6884816 6884817 chrX 12946234 12946234 4 6061417 49.5 38.0 43.8 0.1 6061418 chrX 6884816 intergenic not near genes chrX 9915525 intergenic not near genes chrX 12946234 3` UTR fne + chrX_4_9915001 chrX_9915001 RAL-304_100b 4383 chrX 8037823 8037824 chrX 12946234 12946234 6 4908410 11.5 38.0 24.8 0.2 4908411 chrX 8037823 3` UTR fs(1)h - chrX 10492028 exon spri - chrX 12946234 3` UTR fne + chrX_6_10490001 chrX_10490001 RAL-304_100b 4384 chrX 11109417 11109417 chrX 12946234 12946234 9 1836817 30.0 38.0 34.0 0.3 1836817 chrX 11109417 intron Hsp60 + chrX 12027826 exon Usp7 - chrX 12946234 3` UTR fne + chrX_9_12025001 chrX_12025001 RAL-304_100b 4385 chrX 12946234 12946234 chrX 16632148 16632149 4 3685914 38.5 22.0 30.2 0.1 3685915 chrX 12946234 3` UTR fne + chrX 14789192 3` UTR rut - chrX 16632149 intron,5` UTR Rok -,CG9777 - chrX_4_14785001 chrX_14785001 RAL-304_100b 4386 chrX 12953865 12953926 chrX 12954028 12954090 12 150 5.0 5.0 5.0 2.0 225 chrX 12953865 intron hec - chrX 12953978 intron hec - chrX 12954090 intron hec - chrX_12_12950001 chrX_12950001 RAL-304_100b 4387 chrX 12971665 12971716 chrX 12971767 12971769 26 94 12.0 13.0 12.5 1.9 104 chrX 12971665 intron,exon CR43636 -,CG15721 + chrX 12971717 intron,exon CR43636 -,CG15721 + chrX 12971769 intron,exon CR43636 -,CG15721 + chrX_26_12970001 chrX_12970001 RAL-304_100b 4388 chrX 12977051 12977061 chrX 12977148 12977162 4 100 0.0 25.5 12.8 0.3 111 chrX 12977051 intergenic not near genes chrX 12977106 intergenic not near genes chrX 12977162 intergenic not near genes chrX_4_12975001 chrX_12975001 RAL-304_100b 4389 chrX 13099103 13099107 chrX 13099221 13099225 4 118 1.5 11.0 6.2 0.6 122 chrX 13099103 intron CG43313 - chrX 13099164 intron CG43313 - chrX 13099225 intron CG43313 - chrX_4_13095001 chrX_13095001 RAL-304_100b 4390 chrX 13099111 13099138 chrX 13099208 13099256 6 113 0.5 6.0 3.2 1.4 145 chrX 13099111 intron CG43313 - chrX 13099184 intron CG43313 - chrX 13099256 intron CG43313 - chrX_6_13095001 chrX_13095001 RAL-304_100b 4391 chrX 13146570 13146630 chrX 13146683 13146743 33 111 6.0 10.0 8.0 3.7 173 chrX 13146570 intron CG32645 + chrX 13146656 intron CG32645 + chrX 13146743 intron CG32645 + chrX_33_13145001 chrX_13145001 RAL-304_100b 4392 chrX 13172326 13172354 chrX 13172427 13172455 20 99 25.0 12.0 18.5 1.0 129 chrX 13172326 exon CG34411 - chrX 13172390 intron CG34411 - chrX 13172455 intron CG34411 - chrX_20_13170001 chrX_13170001 RAL-304_100b 4393 chrX 13172355 13172382 chrX 13172426 13172483 26 96 9.5 10.0 9.8 2.4 128 chrX 13172355 exon CG34411 - chrX 13172419 intron CG34411 - chrX 13172483 intron CG34411 - chrX_26_13170001 chrX_13170001 RAL-304_100b 4394 chrX 13235872 13235928 chrX 13235976 13236032 36 103 8.0 7.5 7.8 4.1 160 chrX 13235872 intron mew - chrX 13235952 intron,3` UTR mew -,CG32639 - chrX 13236032 intron,3` UTR mew -,CG32639 - chrX_36_13235001 chrX_13235001 RAL-304_100b 4395 chrX 13236857 13236899 chrX 13236960 13237008 11 108 1.0 9.0 5.0 1.8 151 chrX 13236857 intron mew - chrX 13236932 intron mew - chrX 13237008 intron mew - chrX_11_13235001 chrX_13235001 RAL-304_100b 4396 chrX 13269206 13269228 chrX 13269293 13269314 10 94 1.0 0.0 0.5 6.7 108 chrX 13269206 intron HDAC4 - chrX 13269260 intron HDAC4 - chrX 13269314 intron HDAC4 - chrX_10_13265001 chrX_13265001 RAL-304_100b 4397 chrX 13272144 13272181 chrX 13272254 13272291 27 106 15.0 11.5 13.2 1.9 147 chrX 13272144 intron HDAC4 - chrX 13272218 intron HDAC4 - chrX 13272291 intron HDAC4 - chrX_27_13270001 chrX_13270001 RAL-304_100b 4398 chrX 13278125 13278184 chrX 13278233 13278271 23 107 6.0 4.0 5.0 3.8 146 chrX 13278125 intron HDAC4 - chrX 13278198 intron HDAC4 - chrX 13278271 intron HDAC4 - chrX_23_13275001 chrX_13275001 RAL-304_100b 4399 chrX 13374814 13374870 chrX 13374919 13374965 31 102 5.5 4.5 5.0 5.2 151 chrX 13374814 intron CG1640 + chrX 13374890 intron CG1640 + chrX 13374965 intron CG1640 + chrX_31_13370001 chrX_13370001 RAL-304_100b 4400 chrX 13401458 13401518 chrX 13401834 13401895 jockey 22 374 8.5 5.0 6.8 2.8 437 chrX 13401458 intergenic CG1673 +,CG12725 - chrX 13401676 intergenic CG12725 -,CG1673 + chrX 13401895 3` UTR CG12725 - chrX_22_13400001 chrX_13400001 RAL-304_100b 4401 chrX 13421448 13421464 chrX 13421557 13421573 13 109 0.0 12.5 6.2 1.8 125 chrX 13421448 intergenic Set2 + chrX 13421510 intergenic Set2 + chrX 13421573 intergenic not near genes chrX_13_13420001 chrX_13420001 RAL-304_100b 4402 chrX 13429471 13429487 chrX 13430630 13430661 jockey 10 1171 0.0 14.0 7.0 1.2 1190 chrX 13429471 intergenic not near genes chrX 13430066 intergenic not near genes chrX 13430661 intergenic not near genes chrX_10_13430001 chrX_13430001 RAL-304_100b 4403 chrX 13435352 13435410 chrX 13435476 13435534 40 119 10.5 9.0 9.8 3.7 182 chrX 13435352 intergenic not near genes chrX 13435443 intergenic not near genes chrX 13435534 intergenic not near genes chrX_40_13435001 chrX_13435001 RAL-304_100b 4404 chrX 13442122 13442170 chrX 13442230 13442282 39 113 0.5 9.5 5.0 6.5 160 chrX 13442122 intergenic not near genes chrX 13442202 intergenic not near genes chrX 13442282 intergenic not near genes chrX_39_13440001 chrX_13440001 RAL-304_100b 4405 chrX 13443389 13443416 chrX 13443491 13443508 19 93 29.0 39.0 34.0 0.5 119 chrX 13443389 intergenic not near genes chrX 13443448 intergenic not near genes chrX 13443508 intergenic not near genes chrX_19_13440001 chrX_13440001 RAL-304_100b 4406 chrX 13463628 13463673 chrX 13469225 13469275 mdg3 21 5602 9.5 8.0 8.8 2.1 5647 chrX 13463628 intron Neto + chrX 13466452 intron Neto + chrX 13469275 intron Neto + chrX_21_13465001 chrX_13465001 RAL-304_100b 4407 chrX 13484800 13484855 chrX 13484922 13484977 52 116 16.0 17.0 16.5 3.0 177 chrX 13484800 intron Neto + chrX 13484888 intron Neto + chrX 13484977 intron Neto + chrX_52_13480001 chrX_13480001 RAL-304_100b 4408 chrX 13791140 13791187 chrX 13791316 13791351 15 174 6.5 0.5 3.5 3.3 211 chrX 13791140 intron inaE + chrX 13791246 intron inaE + chrX 13791351 intron inaE + chrX_15_13790001 chrX_13790001 RAL-304_100b 4409 chrX 13821446 13821477 chrX 13821548 13821579 20 99 20.0 13.0 16.5 1.1 133 chrX 13821446 intron Clic - chrX 13821512 intron Clic - chrX 13821579 intron Clic - chrX_20_13820001 chrX_13820001 RAL-304_100b 4410 chrX 13843364 13843406 chrX 13843443 13843488 23 95 9.5 4.5 7.0 2.9 124 chrX 13843364 intron AMPdeam - chrX 13843426 intron AMPdeam - chrX 13843488 intron AMPdeam - chrX_23_13840001 chrX_13840001 RAL-304_100b 4411 chrX 13934271 13934317 chrX 13934379 13934425 28 107 12.0 11.5 11.8 2.2 154 chrX 13934271 intron mamo - chrX 13934348 intron mamo - chrX 13934425 intron mamo - chrX_28_13930001 chrX_13930001 RAL-304_100b 4412 chrX 13935495 13935523 chrX 13935598 13935631 26 105 16.5 28.0 22.2 1.1 136 chrX 13935495 intron mamo - chrX 13935563 intron mamo - chrX 13935631 intron mamo - chrX_26_13935001 chrX_13935001 RAL-304_100b 4413 chrX 13937959 13938002 chrX 13941255 13941298 I-element 25 3293 12.5 12.0 12.2 1.9 3339 chrX 13937959 intron mamo - chrX 13939628 intron mamo - chrX 13941298 intron mamo - chrX_25_13935001 chrX_13935001 RAL-304_100b 4414 chrX 13943276 13943300 chrX 13943377 13943416 25 112 0.0 26.5 13.2 1.8 140 chrX 13943276 intron mamo - chrX 13943346 intron mamo - chrX 13943416 intron mamo - chrX_25_13940001 chrX_13940001 RAL-304_100b 4415 chrX 14091661 14091668 chrX 14092729 14092736 5 1068 23.0 0.0 11.5 0.4 1075 chrX 14091661 intergenic not near genes chrX 14092198 intergenic not near genes chrX 14092736 intergenic not near genes chrX_5_14090001 chrX_14090001 RAL-304_100b 4416 chrX 14104997 14105023 chrX 14114173 14114199 roo 21 9175 24.5 12.0 18.2 1.1 9202 chrX 14104997 intergenic not near genes chrX 14109598 intergenic not near genes chrX 14114199 5` UTR CR44657 + chrX_21_14105001 chrX_14105001 RAL-304_100b 4417 chrX 14105024 14105056 chrX 14114171 14114222 roo 26 9170 11.5 11.0 11.2 2.1 9198 chrX 14105024 intergenic not near genes chrX 14109623 intergenic not near genes chrX 14114222 5` UTR CR44657 + chrX_26_14105001 chrX_14105001 RAL-304_100b 4418 chrX 14131454 14131519 chrX 14131567 14131625 46 101 7.5 13.0 10.2 4.1 171 chrX 14131454 intergenic not near genes chrX 14131540 intergenic not near genes chrX 14131625 intergenic not near genes chrX_46_14130001 chrX_14130001 RAL-304_100b 4419 chrX 14157570 14157595 chrX 14163252 14163277 297 19 5681 16.0 11.5 13.8 1.3 5707 chrX 14157570 intergenic not near genes chrX 14160424 intergenic not near genes chrX 14163277 intergenic not near genes chrX_19_14160001 chrX_14160001 RAL-304_100b 4420 chrX 14174182 14174231 chrX 14174287 14174336 26 102 9.5 9.0 9.2 2.5 154 chrX 14174182 intergenic not near genes chrX 14174259 intergenic CG1368 + chrX 14174336 intergenic CG1368 + chrX_26_14170001 chrX_14170001 RAL-304_100b 4421 chrX 14188047 14188083 chrX 14188155 14188191 10 108 10.0 3.0 6.5 1.3 144 chrX 14188047 intergenic CG12481 + chrX 14188119 intergenic CG12481 + chrX 14188191 intergenic CG12481 + chrX_10_14185001 chrX_14185001 RAL-304_100b 4422 chrX 14190729 14190784 chrX 14191010 14191064 14 277 2.0 4.5 3.2 3.3 335 chrX 14190729 3` UTR CG11585 + chrX 14190896 intergenic CG11585 +,CG13403 - chrX 14191064 intergenic CG13403 -,CG11585 + chrX_14_14190001 chrX_14190001 RAL-304_100b 4423 chrX 14209439 14209451 chrX 14209555 14209567 9 116 20.0 7.5 13.8 0.6 128 chrX 14209439 intron,intron l(1)G0007 +,l(1)G0469 - chrX 14209503 intron,intron l(1)G0007 +,l(1)G0469 - chrX 14209567 intron,intron l(1)G0007 +,l(1)G0469 - chrX_9_14205001 chrX_14205001 RAL-304_100b 4424 chrX 14209458 14209490 chrX 14209554 14209606 19 111 5.0 7.0 6.0 2.7 148 chrX 14209458 intron,intron l(1)G0007 +,l(1)G0469 - chrX 14209532 intron,intron l(1)G0007 +,l(1)G0469 - chrX 14209606 intron,intron l(1)G0007 +,l(1)G0469 - chrX_19_14205001 chrX_14205001 RAL-304_100b 4425 chrX 14216777 14216798 chrX 14216887 14216902 10 109 11.5 8.5 10.0 0.9 125 chrX 14216777 intron l(1)G0007 + chrX 14216840 intron l(1)G0007 + chrX 14216902 intron l(1)G0007 + chrX_10_14215001 chrX_14215001 RAL-304_100b 4426 chrX 14318338 14318378 chrX 14318463 14318503 39 122 17.0 20.5 18.8 2.0 165 chrX 14318338 intergenic not near genes chrX 14318420 intergenic not near genes chrX 14318503 intergenic not near genes chrX_39_14315001 chrX_14315001 RAL-304_100b 4427 chrX 14381392 14381410 chrX 14381571 14381589 11 178 9.0 9.5 9.2 1.1 197 chrX 14381392 intron,3` UTR dpr8 +,betaNACtes4 + chrX 14381490 intron dpr8 + chrX 14381589 intron dpr8 + chrX_11_14380001 chrX_14380001 RAL-304_100b 4428 chrX 14383946 14383953 chrX 14384048 14384062 8 106 16.5 27.5 22.0 0.3 116 chrX 14383946 intron dpr8 + chrX 14384004 intron dpr8 + chrX 14384062 intron dpr8 + chrX_8_14380001 chrX_14380001 RAL-304_100b 4429 chrX 14384416 14384446 chrX 14384519 14384549 23 101 12.0 15.0 13.5 1.6 133 chrX 14384416 intron dpr8 + chrX 14384482 intron dpr8 + chrX 14384549 intron dpr8 + chrX_23_14380001 chrX_14380001 RAL-304_100b 4430 chrX 14395093 14395135 chrX 14395217 14395258 15 124 1.5 13.5 7.5 1.8 165 chrX 14395093 intron dpr8 + chrX 14395176 intron dpr8 + chrX 14395258 intron dpr8 + chrX_15_14395001 chrX_14395001 RAL-304_100b 4431 chrX 14407258 14407273 chrX 14407365 14407365 8 105 1.5 0.0 0.8 4.4 107 chrX 14407258 intron dpr8 + chrX 14407312 intron dpr8 + chrX 14407365 intron dpr8 + chrX_8_14405001 chrX_14405001 RAL-304_100b 4432 chrX 14411237 14411290 chrX 14411340 14411393 45 99 10.0 12.5 11.2 3.7 156 chrX 14411237 intron dpr8 + chrX 14411315 intron dpr8 + chrX 14411393 intron dpr8 + chrX_45_14410001 chrX_14410001 RAL-304_100b 4433 chrX 14416289 14416337 chrX 14421081 14421089 F-element 15 4788 4.0 8.0 6.0 2.1 4800 chrX 14416289 intron dpr8 + chrX 14418689 intron dpr8 + chrX 14421089 intron dpr8 + chrX_15_14415001 chrX_14415001 RAL-304_100b 4434 chrX 14484946 14484986 chrX 14485060 14485100 21 112 0.0 12.0 6.0 3.0 154 chrX 14484946 intergenic not near genes chrX 14485023 intergenic not near genes chrX 14485100 intergenic not near genes chrX_21_14485001 chrX_14485001 RAL-304_100b 4435 chrX 14589685 14589695 chrX 14589950 14589953 pogo 10 264 14.5 4.0 9.2 1.0 268 chrX 14589685 intron CG9413 - chrX 14589819 intron CG9413 - chrX 14589953 intron CG9413 - chrX_10_14585001 chrX_14585001 RAL-304_100b 4436 chrX 14597723 14597749 chrX 14597816 14597840 27 95 0.0 12.5 6.2 3.8 117 chrX 14597723 intron CG9413 - chrX 14597782 intron CG9413 - chrX 14597840 intron CG9413 - chrX_27_14595001 chrX_14595001 RAL-304_100b 4437 chrX 14597751 14597752 chrX 14597815 14597847 5 83 0.0 12.5 6.2 0.7 96 chrX 14597751 intron CG9413 - chrX 14597799 intron CG9413 - chrX 14597847 intron CG9413 - chrX_5_14595001 chrX_14595001 RAL-304_100b 4438 chrX 14636439 14636447 chrX 14641905 14641912 I-element 6 5466 33.0 14.0 23.5 0.2 5473 chrX 14636439 intron NetA - chrX 14639176 intron NetA - chrX 14641912 intron NetA - chrX_6_14635001 chrX_14635001 RAL-304_100b 4439 chrX 14636450 14636456 chrX 14641915 14641922 I-element 6 5466 26.5 20.5 23.5 0.2 5472 chrX 14636450 intron NetA - chrX 14639186 intron NetA - chrX 14641922 intron NetA - chrX_6_14635001 chrX_14635001 RAL-304_100b 4440 chrX 14636457 14636469 chrX 14641912 14641935 I-element 13 5464 22.0 18.5 20.2 0.6 5478 chrX 14636457 intron NetA - chrX 14639196 intron NetA - chrX 14641935 intron NetA - chrX_13_14635001 chrX_14635001 RAL-304_100b 4441 chrX 14636470 14636484 chrX 14641909 14641950 I-element 8 5460 17.0 16.5 16.8 0.4 5480 chrX 14636470 intron NetA - chrX 14639210 intron NetA - chrX 14641950 intron NetA - chrX_8_14635001 chrX_14635001 RAL-304_100b 4442 chrX 14767937 14767976 chrX 14768023 14768081 44 101 16.0 12.0 14.0 2.9 144 chrX 14767937 intergenic not near genes chrX 14768009 intergenic not near genes chrX 14768081 intergenic not near genes chrX_44_14765001 chrX_14765001 RAL-304_100b 4443 chrX 14774958 14775011 chrX 14775060 14775113 20 100 13.5 6.0 9.8 1.9 155 chrX 14774958 intergenic CG5334 + chrX 14775036 intergenic CG5334 + chrX 14775113 intergenic CG5334 + chrX_20_14775001 chrX_14775001 RAL-304_100b 4444 chrX 14778012 14778058 chrX 14782834 14782861 Doc 16 4821 6.5 15.5 11.0 1.3 4849 chrX 14778012 intergenic CG5347 + chrX 14780436 intergenic not near genes chrX 14782861 intergenic Ag5r2 - chrX_16_14780001 chrX_14780001 RAL-304_100b 4445 chrX 14806735 14806746 chrX 14806846 14806859 8 112 25.0 1.0 13.0 0.6 124 chrX 14806735 intron rut - chrX 14806797 intron rut - chrX 14806859 intron rut - chrX_8_14805001 chrX_14805001 RAL-304_100b 4446 chrX 14806747 14806789 chrX 14806845 14806846 17 108 8.5 1.0 4.8 2.9 99 chrX 14806747 intron rut - chrX 14806796 intron rut - chrX 14806846 intron rut - chrX_17_14805001 chrX_14805001 RAL-304_100b 4447 chrX 12649915 12649915 chrX 14812581 14812596 4 2162676 59.5 32.0 45.8 0.1 2162681 chrX 12649915 intron Tomosyn + chrX 13731256 intron g - chrX 14812596 intron rut - chrX_4_13730001 chrX_13730001 RAL-304_100b 4448 chrX 14818737 14818792 chrX 14823966 14824014 copia 35 5225 16.5 9.5 13.0 2.5 5277 chrX 14818737 intron rut - chrX 14821376 intron rut - chrX 14824014 intron rut - chrX_35_14820001 chrX_14820001 RAL-304_100b 4449 chrX 14917841 14917887 chrX 14917971 14918001 35 129 75.5 86.5 81.0 0.4 160 chrX 14917841 intron,exon Flo2 +,Eo - chrX 14917921 intron,exon Flo2 +,Eo - chrX 14918001 intron,exon Flo2 +,Eo - chrX_35_14915001 chrX_14915001 RAL-304_100b 4450 chrX 14936823 14936890 chrX 14946115 14946172 roo 32 9286 0.0 10.0 5.0 5.3 9349 chrX 14936823 intron pdgy - chrX 14941498 intron pdgy - chrX 14946172 intron pdgy - chrX_32_14940001 chrX_14940001 RAL-304_100b 4451 chrX 14968052 14968101 chrX 14968156 14968205 15 104 0.5 13.0 6.8 1.9 153 chrX 14968052 intron eag + chrX 14968128 intron eag + chrX 14968205 intron eag + chrX_15_14965001 chrX_14965001 RAL-304_100b 4452 chrX 15029476 15029508 chrX 15029582 15029588 12 102 3.5 6.5 5.0 2.0 112 chrX 15029476 intron,intron hiw -,be + chrX 15029532 intron,intron hiw -,be + chrX 15029588 intron,intron hiw -,be + chrX_12_15025001 chrX_15025001 RAL-304_100b 4453 chrX 15059149 15059205 chrX 15059280 15059336 10 131 6.5 13.5 10.0 0.9 187 chrX 15059149 exon hiw - chrX 15059242 intron hiw - chrX 15059336 intron hiw - chrX_10_15055001 chrX_15055001 RAL-304_100b 4454 chrX 15070157 15070358 chrX 15070274 15070457 18 117 0.0 0.0 0.0 18.0 300 chrX 15070157 3` UTR Lsd-2 - chrX 15070307 3` UTR Lsd-2 - chrX 15070457 3` UTR Lsd-2 - chrX_18_15070001 chrX_15070001 RAL-304_100b 4455 chrX 15228476 15228496 chrX 15228747 15228767 14 271 27.5 11.5 19.5 0.7 291 chrX 15228476 intergenic CG9101 - chrX 15228622 intergenic CG9101 - chrX 15228767 3` UTR CG9101 - chrX_14_15225001 chrX_15225001 RAL-304_100b 4456 chrX 15228497 15228525 chrX 15228744 15228796 26 268 10.5 11.0 10.8 2.2 299 chrX 15228497 intergenic CG9101 - chrX 15228646 intergenic CG9101 - chrX 15228796 3` UTR CG9101 - chrX_26_15225001 chrX_15225001 RAL-304_100b 4457 chrX 15265853 15265867 chrX 15265960 15265975 7 108 30.5 30.5 30.5 0.2 122 chrX 15265853 intergenic not near genes chrX 15265914 intergenic not near genes chrX 15265975 intergenic not near genes chrX_7_15265001 chrX_15265001 RAL-304_100b 4458 chrX 15273694 15273713 chrX 15274876 15274905 1360 15 1188 28.0 21.5 24.8 0.6 1211 chrX 15273694 intergenic not near genes chrX 15274300 intergenic not near genes chrX 15274905 intergenic not near genes chrX_15_15270001 chrX_15270001 RAL-304_100b 4459 chrX 15273714 15273739 chrX 15274873 15274906 1360 27 1181 16.5 20.0 18.2 1.4 1192 chrX 15273714 intergenic not near genes chrX 15274310 intergenic not near genes chrX 15274906 intergenic not near genes chrX_27_15270001 chrX_15270001 RAL-304_100b 4460 chrX 15277612 15277644 chrX 15277721 15277754 24 108 14.0 10.5 12.2 1.8 142 chrX 15277612 intergenic not near genes chrX 15277683 intergenic not near genes chrX 15277754 intergenic not near genes chrX_24_15275001 chrX_15275001 RAL-304_100b 4461 chrX 15277645 15277668 chrX 15277720 15277778 19 106 8.5 10.5 9.5 1.8 133 chrX 15277645 intergenic not near genes chrX 15277712 intergenic not near genes chrX 15277778 intergenic not near genes chrX_19_15275001 chrX_15275001 RAL-304_100b 4462 chrX 15326710 15326715 chrX 15326931 15326938 I-element 6 223 0.5 7.0 3.8 1.2 228 chrX 15326710 3` UTR Top1 + chrX 15326824 3` UTR Top1 + chrX 15326938 3` UTR Top1 + chrX_6_15325001 chrX_15325001 RAL-304_100b 4463 chrX 15392822 15392831 chrX 15392930 15392936 4 107 41.0 31.5 36.2 0.1 114 chrX 15392822 exon Cngl - chrX 15392879 exon Cngl - chrX 15392936 exon Cngl - chrX_4_15390001 chrX_15390001 RAL-304_100b 4464 chrX 15392836 15392845 chrX 15392927 15392933 4 96 32.5 29.0 30.8 0.1 97 chrX 15392836 exon Cngl - chrX 15392884 exon Cngl - chrX 15392933 exon Cngl - chrX_4_15390001 chrX_15390001 RAL-304_100b 4465 chrX 15413028 15413083 chrX 15417355 15417395 Juan 40 4322 17.5 14.0 15.8 2.4 4367 chrX 15413028 intron Cngl - chrX 15415212 intron Cngl - chrX 15417395 intron Cngl - chrX_40_15415001 chrX_15415001 RAL-304_100b 4466 chrX 15435690 15435701 chrX 15436138 15436159 rover 12 456 0.5 26.5 13.5 0.8 469 chrX 15435690 intron Cngl - chrX 15435924 intron Cngl - chrX 15436159 intron Cngl - chrX_12_15435001 chrX_15435001 RAL-304_100b 4467 chrX 15435702 15435704 chrX 15436113 15436147 rover 5 441 0.5 19.5 10.0 0.5 445 chrX 15435702 intron Cngl - chrX 15435924 intron Cngl - chrX 15436147 intron Cngl - chrX_5_15435001 chrX_15435001 RAL-304_100b 4468 chrX 15519772 15519831 chrX 15519875 15519930 41 99 7.5 9.5 8.5 4.3 158 chrX 15519772 intron Ac13E - chrX 15519851 intron Ac13E - chrX 15519930 exon Ac13E - chrX_41_15515001 chrX_15515001 RAL-304_100b 4469 chrX 15529241 15529294 chrX 15529347 15529370 24 101 5.0 12.0 8.5 2.5 129 chrX 15529241 intron Ac13E - chrX 15529306 intron Ac13E - chrX 15529370 intron Ac13E - chrX_24_15525001 chrX_15525001 RAL-304_100b 4470 chrX 15536681 15536702 chrX 15536777 15536804 18 95 34.0 28.5 31.2 0.6 123 chrX 15536681 intron Ac13E - chrX 15536742 intron Ac13E - chrX 15536804 intron Ac13E - chrX_18_15535001 chrX_15535001 RAL-304_100b 4471 chrX 15536704 15536709 chrX 15536776 15536791 7 86 33.0 28.5 30.8 0.2 87 chrX 15536704 intron Ac13E - chrX 15536748 intron Ac13E - chrX 15536791 intron Ac13E - chrX_7_15535001 chrX_15535001 RAL-304_100b 4472 chrX 15591196 15591206 chrX 15591277 15591306 9 99 0.5 13.5 7.0 1.1 110 chrX 15591196 intron CG9220 - chrX 15591251 intron CG9220 - chrX 15591306 intron CG9220 - chrX_9_15590001 chrX_15590001 RAL-304_100b 4473 chrX 15678011 15678020 chrX 15678114 15678123 6 103 33.0 7.5 20.2 0.3 112 chrX 15678011 intergenic CG12708 + chrX 15678067 intergenic CG12708 + chrX 15678123 intergenic CG12708 + chrX_6_15675001 chrX_15675001 RAL-304_100b 4474 chrX 15678021 15678067 chrX 15678113 15678169 24 99 11.0 7.5 9.2 2.4 148 chrX 15678021 intergenic CG12708 + chrX 15678095 intergenic CG12708 + chrX 15678169 intergenic CG12708 + chrX_24_15675001 chrX_15675001 RAL-304_100b 4475 chrX 15935024 15935075 chrX 15935139 15935189 25 114 8.0 10.5 9.2 2.5 165 chrX 15935024 intron Stim - chrX 15935106 intron Stim - chrX 15935189 intron Stim - chrX_25_15935001 chrX_15935001 RAL-304_100b 4476 chrX 15959514 15959518 chrX 15959627 15959631 4 113 20.0 5.5 12.8 0.3 117 chrX 15959514 intron mmd - chrX 15959572 intron mmd - chrX 15959631 intron mmd - chrX_4_15955001 chrX_15955001 RAL-304_100b 4477 chrX 15959519 15959570 chrX 15959626 15959670 12 109 5.5 5.0 5.2 1.9 151 chrX 15959519 intron mmd - chrX 15959594 intron mmd - chrX 15959670 intron mmd - chrX_12_15955001 chrX_15955001 RAL-304_100b 4478 chrX 15967276 15967279 chrX 15967393 15967396 6 117 0.0 0.0 0.0 6.0 120 chrX 15967276 intron mmd - chrX 15967336 intron mmd - chrX 15967396 intron mmd - chrX_6_15965001 chrX_15965001 RAL-304_100b 4479 chrX 16074117 16074135 chrX 16074478 16074496 8 361 0.5 7.5 4.0 1.6 379 chrX 16074117 intergenic not near genes chrX 16074306 intergenic Tob - chrX 16074496 intergenic Tob - chrX_8_16070001 chrX_16070001 RAL-304_100b 4480 chrX 16074136 16074162 chrX 16074477 16074519 10 359 0.5 7.5 4.0 2.0 383 chrX 16074136 intergenic not near genes chrX 16074328 intergenic Tob - chrX 16074519 intergenic Tob - chrX_10_16070001 chrX_16070001 RAL-304_100b 4481 chrX 16080255 16080263 chrX 16080360 16080362 7 104 53.0 25.5 39.2 0.2 107 chrX 16080255 exon Tob - chrX 16080308 exon Tob - chrX 16080362 exon Tob - chrX_7_16080001 chrX_16080001 RAL-304_100b 4482 chrX 16080264 16080265 chrX 16080357 16080370 4 102 49.5 22.5 36.0 0.1 106 chrX 16080264 exon Tob - chrX 16080317 exon Tob - chrX 16080370 exon Tob - chrX_4_16080001 chrX_16080001 RAL-304_100b 4483 chrX 16080266 16080309 chrX 16080355 16080404 42 101 20.5 21.0 20.8 1.9 138 chrX 16080266 exon Tob - chrX 16080335 exon Tob - chrX 16080404 exon Tob - chrX_42_16080001 chrX_16080001 RAL-304_100b 4484 chrX 16100532 16100590 chrX 16100636 16100695 9 103 5.0 5.5 5.2 1.5 163 chrX 16100532 intron,intron CG42353 -,CG42354 - chrX 16100614 intron,intron CG42353 -,CG42354 - chrX 16100695 intron,intron CG42353 -,CG42354 - chrX_9_16100001 chrX_16100001 RAL-304_100b 4485 chrX 16222753 16222809 chrX 16231128 16231184 roo 17 8374 4.5 6.0 5.2 2.7 8431 chrX 16222753 intergenic not near genes chrX 16226968 intergenic not near genes chrX 16231184 intergenic not near genes chrX_17_16225001 chrX_16225001 RAL-304_100b 4486 chrX 16295502 16295554 chrX 16295611 16295623 13 105 4.5 0.0 2.2 4.1 121 chrX 16295502 intron CG9911 - chrX 16295562 intron CG9911 - chrX 16295623 intron CG9911 - chrX_13_16295001 chrX_16295001 RAL-304_100b 4487 chrX 16329441 16329445 chrX 16329513 16329532 9 89 0.0 17.5 8.8 0.9 91 chrX 16329441 intron CG9919 - chrX 16329486 intron CG9919 - chrX 16329532 exon CG9919 - chrX_9_16325001 chrX_16325001 RAL-304_100b 4488 chrX 16329446 16329448 chrX 16329511 16329556 4 97 0.0 17.5 8.8 0.4 110 chrX 16329446 intron CG9919 - chrX 16329501 intron CG9919 - chrX 16329556 exon CG9919 - chrX_4_16325001 chrX_16325001 RAL-304_100b 4489 chrX 16340644 16340698 chrX 16349824 16349849 roo 10 9177 1.0 3.5 2.2 3.1 9205 chrX 16340644 intergenic Dsp1 + chrX 16345246 intergenic not near genes chrX 16349849 intergenic sl + chrX_10_16345001 chrX_16345001 RAL-304_100b 4490 chrX 16492620 16492634 chrX 16498222 16498236 mdg3 8 5601 33.5 11.5 22.5 0.3 5616 chrX 16492620 intron para - chrX 16495428 intron para - chrX 16498236 intron para - chrX_8_16495001 chrX_16495001 RAL-304_100b 4491 chrX 16492636 16492674 chrX 16498221 16498276 mdg3 25 5598 15.5 11.0 13.2 1.8 5640 chrX 16492636 intron para - chrX 16495456 intron para - chrX 16498276 exon para - chrX_25_16495001 chrX_16495001 RAL-304_100b 4492 chrX 7978952 7978952 chrX 16525741 16525794 5 8546811 48.5 38.0 43.2 0.1 8546842 chrX 7978952 intron sn + chrX 12252373 intron Ten-a + chrX 16525794 intron para - chrX_5_12250001 chrX_12250001 RAL-304_100b 4493 chrX 16570850 16570900 chrX 16570955 16570985 23 101 10.5 3.0 6.8 2.9 135 chrX 16570850 intron CanA-14F - chrX 16570918 intron CanA-14F - chrX 16570985 intron CanA-14F - chrX_23_16570001 chrX_16570001 RAL-304_100b 4494 chrX 16623465 16623488 chrX 16623569 16623586 11 105 25.0 2.0 13.5 0.8 121 chrX 16623465 intergenic not near genes chrX 16623526 intergenic Rok - chrX 16623586 intergenic Rok - chrX_11_16620001 chrX_16620001 RAL-304_100b 4495 chrX 16650909 16650931 chrX 16651008 16651033 12 101 16.0 0.0 8.0 1.3 124 chrX 16650909 intergenic CG32573 +,CG42512 + chrX 16650971 intergenic CG32573 +,CG42512 + chrX 16651033 intergenic CG32573 +,CG42512 + chrX_12_16650001 chrX_16650001 RAL-304_100b 4496 chrX 16689600 16689653 chrX 16689707 16689759 38 102 12.5 10.5 11.5 3.0 159 chrX 16689600 intron Sep4 - chrX 16689680 intron Sep4 - chrX 16689759 intron Sep4 - chrX_38_16685001 chrX_16685001 RAL-304_100b 4497 chrX 16690430 16690456 chrX 16690534 16690554 23 100 21.0 11.0 16.0 1.4 124 chrX 16690430 intron Sep4 - chrX 16690492 intron Sep4 - chrX 16690554 intron Sep4 - chrX_23_16690001 chrX_16690001 RAL-304_100b 4498 chrX 16690458 16690478 chrX 16690531 16690561 17 84 11.0 10.5 10.8 1.4 103 chrX 16690458 intron Sep4 - chrX 16690510 intron Sep4 - chrX 16690561 intron Sep4 - chrX_17_16690001 chrX_16690001 RAL-304_100b 4499 chrX 16707972 16707977 chrX 16708131 16708136 7 159 0.0 11.0 5.5 1.1 164 chrX 16707972 intron CG4678 + chrX 16708054 intron CG4678 + chrX 16708136 intron CG4678 + chrX_7_16705001 chrX_16705001 RAL-304_100b 4500 chrX 16764712 16764759 chrX 16764814 16764829 12 97 9.0 1.5 5.2 1.9 117 chrX 16764712 intron if - chrX 16764770 intron if - chrX 16764829 intron if - chrX_12_16760001 chrX_16760001 RAL-304_100b 4501 chrX 15785503 15785507 chrX 16786905 16786909 4 1001402 34.5 13.0 23.8 0.2 1001406 chrX 15785503 5` UTR Paf-AHalpha - chrX 16286206 intron CG32576 - chrX 16786909 5` UTR CG9609 - chrX_4_16285001 chrX_16285001 RAL-304_100b 4502 chrX 16891343 16891345 chrX 16891452 16891457 4 111 12.0 13.5 12.8 0.3 114 chrX 16891343 intergenic not near genes chrX 16891400 intergenic not near genes chrX 16891457 intergenic not near genes chrX_4_16890001 chrX_16890001 RAL-304_100b 4503 chrX 16936011 16936013 chrX 16936429 16936456 jockey 4 437 9.0 12.0 10.5 0.3 445 chrX 16936011 intron CG4928 + chrX 16936234 intron CG4928 + chrX 16936456 intron CG4928 + chrX_4_16935001 chrX_16935001 RAL-304_100b 4504 chrX 16936014 16936031 chrX 16936423 16936464 jockey 12 434 6.0 11.0 8.5 1.3 450 chrX 16936014 intron CG4928 + chrX 16936239 intron CG4928 + chrX 16936464 intron CG4928 + chrX_12_16935001 chrX_16935001 RAL-304_100b 4505 chrX 16983076 16983076 chrX 19404963 19404965 7 2421888 46.0 40.0 43.0 0.2 2421889 chrX 16983076 intron CG45002 - chrX 18194020 intron Frq2 + chrX 19404965 intron kek5 + chrX_7_18190001 chrX_18190001 RAL-304_100b 4506 chrX 1053117 1053123 chrX 16983077 16983077 8 15929958 34.0 46.0 40.0 0.2 15929960 chrX 1053117 intron CR44779 + chrX 9018097 intron,intron rdgA +,CR43836 - chrX 16983077 intron CG45002 - chrX_8_9015001 chrX_9015001 RAL-304_100b 4507 chrX 16983077 16983077 chrX 19404963 19404965 7 2421886 45.5 40.0 42.8 0.2 2421888 chrX 16983077 intron CG45002 - chrX 18194021 intron Frq2 + chrX 19404965 intron kek5 + chrX_7_18190001 chrX_18190001 RAL-304_100b 4508 chrX 17057910 17057963 chrX 17058176 17058229 pogo 9 266 3.0 11.0 7.0 1.1 319 chrX 17057910 intron CG45002 - chrX 17058070 intron CG45002 - chrX 17058229 intron CG45002 - chrX_9_17055001 chrX_17055001 RAL-304_100b 4509 chrX 17063152 17063208 chrX 17063264 17063320 24 109 6.5 11.0 8.8 2.4 168 chrX 17063152 intron CG45002 - chrX 17063236 intron CG45002 - chrX 17063320 intron CG45002 - chrX_24_17060001 chrX_17060001 RAL-304_100b 4510 chrX 17088189 17088201 chrX 17088807 17088819 8 618 5.0 18.0 11.5 0.6 630 chrX 17088189 intergenic not near genes chrX 17088504 intergenic not near genes chrX 17088819 intergenic not near genes chrX_8_17085001 chrX_17085001 RAL-304_100b 4511 chrX 17112248 17112252 chrX 17112322 17112359 7 102 0.0 25.0 12.5 0.5 111 chrX 17112248 intron CG5004 + chrX 17112304 intron CG5004 + chrX 17112359 intron CG5004 + chrX_7_17110001 chrX_17110001 RAL-304_100b 4512 chrX 17122627 17122671 chrX 17122743 17122787 25 114 10.5 11.5 11.0 2.1 160 chrX 17122627 intron CG5004 + chrX 17122707 intron CG5004 + chrX 17122787 intron CG5004 + chrX_25_17120001 chrX_17120001 RAL-304_100b 4513 chrX 17195181 17195236 chrX 17200291 17200311 flea 29 5108 8.0 9.5 8.8 3.0 5130 chrX 17195181 3` UTR baz + chrX 17197746 3` UTR baz + chrX 17200311 3` UTR baz + chrX_29_17195001 chrX_17195001 RAL-304_100b 4514 chrX 17205825 17205859 chrX 17205940 17205967 20 113 6.0 17.0 11.5 1.6 142 chrX 17205825 intergenic not near genes chrX 17205896 intergenic not near genes chrX 17205967 intergenic CG32564 + chrX_20_17205001 chrX_17205001 RAL-304_100b 4515 chrX 17211437 17211490 chrX 17212115 17212168 36 681 66.0 73.5 69.8 0.5 731 chrX 17211437 intergenic not near genes chrX 17211802 intergenic not near genes chrX 17212168 intergenic CG18258 + chrX_36_17210001 chrX_17210001 RAL-304_100b 4516 chrX 17273831 17273841 chrX 17273947 17273957 8 115 8.0 11.0 9.5 0.8 126 chrX 17273831 exon f + chrX 17273894 intron f + chrX 17273957 intron f + chrX_8_17270001 chrX_17270001 RAL-304_100b 4517 chrX 17303584 17303605 chrX 17303685 17303706 12 99 12.5 9.0 10.8 1.0 122 chrX 17303584 intron CG5445 + chrX 17303645 intron CG5445 + chrX 17303706 intron CG5445 + chrX_12_17300001 chrX_17300001 RAL-304_100b 4518 chrX 17352577 17352617 chrX 17352696 17352745 21 122 0.5 13.5 7.0 2.6 168 chrX 17352577 intergenic not near genes chrX 17352661 intergenic not near genes chrX 17352745 intergenic not near genes chrX_21_17350001 chrX_17350001 RAL-304_100b 4519 chrX 17357512 17357537 chrX 17357631 17357656 17 117 8.0 6.0 7.0 2.1 144 chrX 17357512 intergenic not near genes chrX 17357584 intergenic not near genes chrX 17357656 intergenic not near genes chrX_17_17355001 chrX_17355001 RAL-304_100b 4520 chrX 17431327 17431341 chrX 17431693 17431707 jockey 12 366 35.0 8.5 21.8 0.5 380 chrX 17431327 intron CG12994 - chrX 17431517 intron CG12994 - chrX 17431707 intron CG12994 - chrX_12_17430001 chrX_17430001 RAL-304_100b 4521 chrX 17476437 17476451 chrX 17476539 17476547 5 98 30.0 13.0 21.5 0.2 110 chrX 17476437 intron CG43658 - chrX 17476492 intron CG43658 - chrX 17476547 intron CG43658 - chrX_5_17475001 chrX_17475001 RAL-304_100b 4522 chrX 17476454 17476465 chrX 17476536 17476550 13 88 24.0 13.5 18.8 0.7 96 chrX 17476454 intron CG43658 - chrX 17476502 intron CG43658 - chrX 17476550 intron CG43658 - chrX_13_17475001 chrX_17475001 RAL-304_100b 4523 chrX 17476467 17476491 chrX 17476534 17476546 28 77 13.5 13.0 13.2 2.0 79 chrX 17476467 intron CG43658 - chrX 17476506 intron CG43658 - chrX 17476546 intron CG43658 - chrX_28_17475001 chrX_17475001 RAL-304_100b 4524 chrX 9358489 9358489 chrX 17551103 17551163 4 8192646 11.5 29.0 20.2 0.2 8192674 chrX 9358489 3` UTR BCL7-like + chrX 13454826 intron Neto + chrX 17551163 intron CG43658 - chrX_4_13450001 chrX_13450001 RAL-304_100b 4525 chrX 17556922 17556935 chrX 17557446 17557451 mdg1 8 522 38.0 9.5 23.8 0.3 529 chrX 17556922 intron CG43658 - chrX 17557186 intron CG43658 - chrX 17557451 intron CG43658 - chrX_8_17555001 chrX_17555001 RAL-304_100b 4526 chrX 17556942 17556952 chrX 17557444 17557446 mdg1 5 501 32.5 9.0 20.8 0.2 504 chrX 17556942 intron CG43658 - chrX 17557194 intron CG43658 - chrX 17557446 intron CG43658 - chrX_5_17555001 chrX_17555001 RAL-304_100b 4527 chrX 17680875 17680878 chrX 17680977 17680980 4 102 29.5 15.0 22.2 0.2 105 chrX 17680875 intron chas - chrX 17680928 intron chas - chrX 17680980 intron chas - chrX_4_17680001 chrX_17680001 RAL-304_100b 4528 chrX 17680884 17680925 chrX 17680966 17680975 33 95 12.0 14.0 13.0 2.4 91 chrX 17680884 intron chas - chrX 17680930 intron chas - chrX 17680975 intron chas - chrX_33_17680001 chrX_17680001 RAL-304_100b 4529 chrX 17685434 17685470 chrX 17685542 17685578 14 107 8.0 5.5 6.8 1.8 144 chrX 17685434 intron chas - chrX 17685506 intron chas - chrX 17685578 intron chas - chrX_14_17685001 chrX_17685001 RAL-304_100b 4530 chrX 17711349 17711376 chrX 17711460 17711487 12 110 4.5 6.5 5.5 1.8 138 chrX 17711349 intron CG42684 + chrX 17711418 intron CG42684 + chrX 17711487 intron CG42684 + chrX_12_17710001 chrX_17710001 RAL-304_100b 4531 chrX 17716564 17716604 chrX 17716674 17716689 30 106 22.5 17.0 19.8 1.4 125 chrX 17716564 intron CG42684 + chrX 17716626 intron CG42684 + chrX 17716689 intron CG42684 + chrX_30_17715001 chrX_17715001 RAL-304_100b 4532 chrX 17726440 17726453 chrX 17726535 17726557 8 101 17.5 12.0 14.8 0.5 117 chrX 17726440 intron CG42684 + chrX 17726498 intron CG42684 + chrX 17726557 intron CG42684 + chrX_8_17725001 chrX_17725001 RAL-304_100b 4533 chrX 17740349 17740406 chrX 17740451 17740498 36 91 15.5 15.0 15.2 2.2 149 chrX 17740349 intron CG42684 + chrX 17740424 intron CG42684 + chrX 17740498 intron CG42684 + chrX_36_17740001 chrX_17740001 RAL-304_100b 4534 chrX 17766342 17766375 chrX 17766455 17766498 19 116 13.0 6.5 9.8 1.8 156 chrX 17766342 intergenic not near genes chrX 17766420 intergenic not near genes chrX 17766498 intergenic not near genes chrX_19_17765001 chrX_17765001 RAL-304_100b 4535 chrX 17792936 17792979 chrX 17796253 17796302 flea 34 3322 13.0 18.5 15.8 2.0 3366 chrX 17792936 intron OdsH + chrX 17794619 intron OdsH + chrX 17796302 intron OdsH + chrX_34_17790001 chrX_17790001 RAL-304_100b 4536 chrX 17854906 17854935 chrX 17855000 17855043 19 107 5.5 12.5 9.0 1.9 137 chrX 17854906 intron CG32557 - chrX 17854974 intron CG32557 - chrX 17855043 intron CG32557 - chrX_19_17850001 chrX_17850001 RAL-304_100b 4537 chrX 17867022 17867076 chrX 17867123 17867177 15 99 14.0 15.5 14.8 0.9 155 chrX 17867022 intron mnb - chrX 17867100 intron mnb - chrX 17867177 intron mnb - chrX_15_17865001 chrX_17865001 RAL-304_100b 4538 chrX 17911830 17911865 chrX 17911940 17911978 22 112 4.0 8.5 6.2 3.1 148 chrX 17911830 intron CG6847 + chrX 17911904 intron CG6847 + chrX 17911978 intron CG6847 + chrX_22_17910001 chrX_17910001 RAL-304_100b 4539 chrX 17911866 17911879 chrX 17911939 17911992 11 109 2.5 8.0 5.2 1.8 126 chrX 17911866 intron CG6847 + chrX 17911929 intron CG6847 + chrX 17911992 intron CG6847 + chrX_11_17910001 chrX_17910001 RAL-304_100b 4540 chrX 18029167 18029174 chrX 18029273 18029280 6 105 16.0 0.0 8.0 0.7 113 chrX 18029167 intron Sh - chrX 18029224 intron Sh - chrX 18029280 intron Sh - chrX_6_18025001 chrX_18025001 RAL-304_100b 4541 chrX 18029175 18029191 chrX 18029272 18029297 10 105 8.5 0.0 4.2 1.9 122 chrX 18029175 intron Sh - chrX 18029236 intron Sh - chrX 18029297 intron Sh - chrX_10_18025001 chrX_18025001 RAL-304_100b 4542 chrX 18122793 18122850 chrX 18122894 18122951 44 97 14.0 12.0 13.0 3.1 158 chrX 18122793 5` UTR CR45606 + chrX 18122872 5` UTR CR45606 + chrX 18122951 intergenic CR45606 + chrX_44_18120001 chrX_18120001 RAL-304_100b 4543 chrX 18141065 18141099 chrX 18141165 18141200 18 100 2.5 8.5 5.5 2.8 135 chrX 18141065 intergenic not near genes chrX 18141132 intergenic not near genes chrX 18141200 intergenic not near genes chrX_18_18140001 chrX_18140001 RAL-304_100b 4544 chrX 18175457 18175479 chrX 18175543 18175589 7 104 0.0 9.5 4.8 1.2 132 chrX 18175457 intergenic not near genes chrX 18175523 intergenic not near genes chrX 18175589 intergenic not near genes chrX_7_18175001 chrX_18175001 RAL-304_100b 4545 chrX 18194042 18194063 chrX 18194602 18194623 BS 12 558 17.5 11.5 14.5 0.8 581 chrX 18194042 intron Frq2 + chrX 18194332 intron Frq2 + chrX 18194623 intron Frq2 + chrX_12_18190001 chrX_18190001 RAL-304_100b 4546 chrX 18194064 18194100 chrX 18194600 18194660 BS 22 555 9.5 10.5 10.0 2.0 596 chrX 18194064 intron Frq2 + chrX 18194362 intron Frq2 + chrX 18194660 intron Frq2 + chrX_22_18190001 chrX_18190001 RAL-304_100b 4547 chrX 18218013 18218067 chrX 18218154 18218209 20 140 7.5 9.5 8.5 2.1 196 chrX 18218013 intron CG33639 - chrX 18218111 intron CG33639 - chrX 18218209 intron CG33639 - chrX_20_18215001 chrX_18215001 RAL-304_100b 4548 chrX 18320490 18320500 chrX 18320632 18320657 7 155 0.0 8.0 4.0 1.4 167 chrX 18320490 intron CG6023 - chrX 18320574 intron CG6023 - chrX 18320657 intron CG6023 - chrX_7_18320001 chrX_18320001 RAL-304_100b 4549 chrX 18427355 18427409 chrX 18427791 18427845 44 433 14.5 7.5 11.0 3.7 490 chrX 18427355 intergenic CG42323 + chrX 18427600 intergenic not near genes chrX 18427845 intergenic not near genes chrX_44_18425001 chrX_18425001 RAL-304_100b 4550 chrX 18429470 18429521 chrX 18434806 18434855 Transpac 36 5335 8.0 11.5 9.8 3.3 5385 chrX 18429470 intergenic not near genes chrX 18432162 intergenic not near genes chrX 18434855 intergenic not near genes chrX_36_18430001 chrX_18430001 RAL-304_100b 4551 chrX 18453593 18453618 chrX 18453678 18453719 34 91 29.0 18.5 23.8 1.4 126 chrX 18453593 intron CG32547 - chrX 18453656 intron CG32547 - chrX 18453719 intron CG32547 - chrX_34_18450001 chrX_18450001 RAL-304_100b 4552 chrX 18474291 18474303 chrX 18474399 18474411 11 108 25.0 1.5 13.2 0.8 120 chrX 18474291 intron CG32547 - chrX 18474351 intron CG32547 - chrX 18474411 intron CG32547 - chrX_11_18470001 chrX_18470001 RAL-304_100b 4553 chrX 18474304 18474328 chrX 18474396 18474401 16 102 15.5 1.0 8.2 1.7 97 chrX 18474304 intron CG32547 - chrX 18474352 intron CG32547 - chrX 18474401 intron CG32547 - chrX_16_18470001 chrX_18470001 RAL-304_100b 4554 chrX 18490019 18490055 chrX 18490199 18490233 16 180 12.0 18.5 15.2 1.0 214 chrX 18490019 intergenic CG15046 - chrX 18490126 intergenic not near genes chrX 18490233 intergenic not near genes chrX_16_18490001 chrX_18490001 RAL-304_100b 4555 chrX 18555354 18555363 chrX 18556900 18556909 transib2 10 1545 31.5 9.0 20.2 0.5 1555 chrX 18555354 intron Bx + chrX 18556132 intron Bx + chrX 18556909 intron Bx + chrX_10_18555001 chrX_18555001 RAL-304_100b 4556 chrX 18555367 18555411 chrX 18556898 18556958 transib2 27 1537 11.0 8.5 9.8 2.5 1591 chrX 18555367 intron Bx + chrX 18556162 intron Bx + chrX 18556958 intron Bx + chrX_27_18555001 chrX_18555001 RAL-304_100b 4557 chrX 12946234 12946235 chrX 18572525 18572525 12 5626290 38.5 30.5 34.5 0.3 5626291 chrX 12946234 3` UTR fne + chrX 15759380 intron Graf - chrX 18572525 intergenic not near genes chrX_12_15755001 chrX_15755001 RAL-304_100b 4558 chrX 12946233 12946235 chrX 18572526 18572526 4 5626292 38.5 30.5 34.5 0.1 5626293 chrX 12946233 3` UTR fne + chrX 15759380 intron Graf - chrX 18572526 intergenic not near genes chrX_4_15755001 chrX_15755001 RAL-304_100b 4559 chrX 18574779 18574825 chrX 18574879 18574930 29 102 3.5 8.0 5.8 4.3 151 chrX 18574779 intergenic not near genes chrX 18574854 intergenic not near genes chrX 18574930 intergenic not near genes chrX_29_18570001 chrX_18570001 RAL-304_100b 4560 chrX 18644994 18645004 chrX 18645117 18645127 6 123 29.0 11.5 20.2 0.3 133 chrX 18644994 intron Rip11 - chrX 18645060 intron Rip11 - chrX 18645127 intron Rip11 - chrX_6_18645001 chrX_18645001 RAL-304_100b 4561 chrX 18645005 18645005 chrX 18645115 18645128 5 116 27.5 10.5 19.0 0.2 123 chrX 18645005 intron Rip11 - chrX 18645066 intron Rip11 - chrX 18645128 intron Rip11 - chrX_5_18645001 chrX_18645001 RAL-304_100b 4562 chrX 18645006 18645007 chrX 18645114 18645130 5 115 27.5 10.0 18.8 0.3 124 chrX 18645006 intron Rip11 - chrX 18645068 intron Rip11 - chrX 18645130 intron Rip11 - chrX_5_18645001 chrX_18645001 RAL-304_100b 4563 chrX 18645008 18645049 chrX 18645111 18645132 45 119 10.5 9.5 10.0 4.1 124 chrX 18645008 intron Rip11 - chrX 18645070 intron Rip11 - chrX 18645132 intron Rip11 - chrX_45_18645001 chrX_18645001 RAL-304_100b 4564 chrX 18698822 18698877 chrX 18698964 18699019 12 136 11.0 7.5 9.2 1.2 197 chrX 18698822 intergenic not near genes chrX 18698920 intergenic not near genes chrX 18699019 intergenic not near genes chrX_12_18695001 chrX_18695001 RAL-304_100b 4565 chrX 18817902 18817958 chrX 18818015 18818068 46 109 11.0 18.0 14.5 3.0 166 chrX 18817902 intron CG42450 + chrX 18817985 intron CG42450 + chrX 18818068 intron CG42450 + chrX_46_18815001 chrX_18815001 RAL-304_100b 4566 chrX 18896495 18896548 chrX 18896631 18896684 17 132 4.5 12.5 8.5 1.8 189 chrX 18896495 3` UTR CG7349 + chrX 18896590 intergenic CG7349 + chrX 18896684 intergenic CG7349 + chrX_17_18895001 chrX_18895001 RAL-304_100b 4567 chrX 18896891 18896939 chrX 18896984 18897041 48 94 18.5 13.0 15.8 2.9 150 chrX 18896891 intergenic CG7349 + chrX 18896966 intergenic CG7349 + chrX 18897041 intergenic CG7349 + chrX_48_18895001 chrX_18895001 RAL-304_100b 4568 chrX 18957047 18957102 chrX 18965735 18965765 roo 24 8683 3.5 8.0 5.8 3.5 8718 chrX 18957047 intron CG43759 + chrX 18961406 intron CG43759 + chrX 18965765 intron CG43759 + chrX_24_18960001 chrX_18960001 RAL-304_100b 4569 chrX 19019950 19019971 chrX 19020096 19020123 9 150 10.0 14.5 12.2 0.7 173 chrX 19019950 intron CG43759 + chrX 19020036 intron CG43759 + chrX 19020123 intron CG43759 + chrX_9_19020001 chrX_19020001 RAL-304_100b 4570 chrX 19060386 19060403 chrX 19065195 19065212 Doc 8 4809 22.5 21.0 21.8 0.4 4826 chrX 19060386 intron CG14190 + chrX 19062799 intron CG14190 + chrX 19065212 intron CG14190 + chrX_8_19060001 chrX_19060001 RAL-304_100b 4571 chrX 19060406 19060439 chrX 19065194 19065236 Doc 22 4804 11.0 20.5 15.8 1.3 4830 chrX 19060406 intron CG14190 + chrX 19062821 intron CG14190 + chrX 19065236 intron CG14190 + chrX_22_19060001 chrX_19060001 RAL-304_100b 4572 chrX 19076485 19076488 chrX 21235659 21235660 5 2159173 30.0 75.5 52.8 0.1 2159175 chrX 19076485 intergenic not near genes chrX 20156072 3` UTR Rab35 - chrX 21235660 intron CG32521 - chrX_5_20155001 chrX_20155001 RAL-304_100b 4573 chrX 19098746 19098781 chrX 19098849 19098882 33 102 6.0 12.0 9.0 3.3 136 chrX 19098746 intergenic not near genes chrX 19098814 intergenic not near genes chrX 19098882 intergenic not near genes chrX_33_19095001 chrX_19095001 RAL-304_100b 4574 chrX 19106799 19106807 chrX 19106900 19106908 5 101 36.5 11.0 23.8 0.2 109 chrX 19106799 intergenic not near genes chrX 19106854 intergenic not near genes chrX 19106908 intergenic not near genes chrX_5_19105001 chrX_19105001 RAL-304_100b 4575 chrX 19106812 19106837 chrX 19106899 19106899 6 90 19.0 11.5 15.2 0.4 87 chrX 19106812 intergenic not near genes chrX 19106856 intergenic not near genes chrX 19106899 intergenic not near genes chrX_6_19105001 chrX_19105001 RAL-304_100b 4576 chrX 19119678 19119713 chrX 19119789 19119824 20 109 7.0 1.0 4.0 4.0 146 chrX 19119678 intergenic not near genes chrX 19119751 intergenic not near genes chrX 19119824 intergenic not near genes chrX_20_19115001 chrX_19115001 RAL-304_100b 4577 chrX 19136527 19136584 chrX 19143472 19143484 412 40 6938 13.0 7.0 10.0 3.6 6957 chrX 19136527 intergenic not near genes chrX 19140006 intergenic not near genes chrX 19143484 3` UTR RhoGAP18B - chrX_40_19140001 chrX_19140001 RAL-304_100b 4578 chrX 19170567 19170602 chrX 19170669 19170704 29 99 23.5 31.0 27.2 1.0 137 chrX 19170567 5` UTR Inx5 - chrX 19170636 5` UTR Inx5 - chrX 19170704 5` UTR Inx5 - chrX_29_19170001 chrX_19170001 RAL-304_100b 4579 chrX 19309629 19309643 chrX 19309734 19309748 9 104 28.0 15.0 21.5 0.4 119 chrX 19309629 intergenic not near genes chrX 19309688 intergenic not near genes chrX 19309748 intergenic not near genes chrX_9_19305001 chrX_19305001 RAL-304_100b 4580 chrX 19309645 19309684 chrX 19309732 19309774 31 94 12.0 14.5 13.2 2.2 129 chrX 19309645 intergenic not near genes chrX 19309710 intergenic not near genes chrX 19309774 intergenic not near genes chrX_31_19305001 chrX_19305001 RAL-304_100b 4581 chrX 19352459 19352505 chrX 19370477 19370526 13 18029 48.5 3.5 26.0 0.5 18067 chrX 19352459 intergenic not near genes chrX 19361492 intron kek5 + chrX 19370526 intron kek5 + chrX_13_19360001 chrX_19360001 RAL-304_100b 4582 chrX 19380134 19380145 chrX 19380400 19380401 pogo 7 263 28.0 9.5 18.8 0.4 267 chrX 19380134 intron kek5 + chrX 19380268 intron kek5 + chrX 19380401 intron kek5 + chrX_7_19380001 chrX_19380001 RAL-304_100b 4583 chrX 19380146 19380185 chrX 19380397 19380441 pogo 21 263 13.0 7.5 10.2 1.9 295 chrX 19380146 intron kek5 + chrX 19380294 intron kek5 + chrX 19380441 intron kek5 + chrX_21_19380001 chrX_19380001 RAL-304_100b 4584 chrX 19404552 19404566 chrX 19404730 19404744 4 178 14.0 1.0 7.5 0.5 192 chrX 19404552 intron kek5 + chrX 19404648 intron kek5 + chrX 19404744 intron kek5 + chrX_4_19400001 chrX_19400001 RAL-304_100b 4585 chrX 16983076 16983077 chrX 19404963 19404965 11 2421888 45.5 40.0 42.8 0.3 2421889 chrX 16983076 intron CG45002 - chrX 18194020 intron Frq2 + chrX 19404965 intron kek5 + chrX_11_18190001 chrX_18190001 RAL-304_100b 4586 chrX 6637487 6637489 chrX 19451755 19451757 4 12814268 36.0 74.5 55.2 0.1 12814270 chrX 6637487 intron,5` UTR pigs +,CR44817 + chrX 13044622 intron rad + chrX 19451757 intron kek5 + chrX_4_13040001 chrX_13040001 RAL-304_100b 4587 chrX 19472112 19472135 chrX 19472698 19472728 jockey 11 588 21.5 14.5 18.0 0.6 616 chrX 19472112 intergenic kek5 + chrX 19472420 intergenic not near genes chrX 19472728 intergenic not near genes chrX_11_19470001 chrX_19470001 RAL-304_100b 4588 chrX 19472139 19472156 chrX 19472693 19472744 jockey 16 570 13.5 13.0 13.2 1.1 605 chrX 19472139 intergenic kek5 + chrX 19472442 intergenic not near genes chrX 19472744 intergenic not near genes chrX_16_19470001 chrX_19470001 RAL-304_100b 4589 chrX 19500690 19500750 chrX 19500802 19500862 22 109 4.5 10.5 7.5 2.6 172 chrX 19500690 intron,intron CG14200 +,Pfrx + chrX 19500776 intron,intron CG14200 +,Pfrx + chrX 19500862 intron,intron CG14200 +,Pfrx + chrX_22_19500001 chrX_19500001 RAL-304_100b 4590 chrX 19532848 19532860 chrX 19532945 19532957 6 100 15.0 22.0 18.5 0.3 109 chrX 19532848 3` UTR CG32532 - chrX 19532902 3` UTR CG32532 - chrX 19532957 3` UTR CG32532 - chrX_6_19530001 chrX_19530001 RAL-304_100b 4591 chrX 19535739 19535766 chrX 19535839 19535867 10 99 33.0 29.0 31.0 0.3 128 chrX 19535739 intron CG32532 - chrX 19535803 intron CG32532 - chrX 19535867 intron CG32532 - chrX_10_19535001 chrX_19535001 RAL-304_100b 4592 chrX 19541404 19541446 chrX 19541509 19541551 13 104 6.5 7.5 7.0 1.6 147 chrX 19541404 intron CG32532 - chrX 19541478 intron CG32532 - chrX 19541551 intron CG32532 - chrX_13_19540001 chrX_19540001 RAL-304_100b 4593 chrX 19542109 19542165 chrX 19542232 19542288 22 121 6.0 4.5 5.2 3.5 179 chrX 19542109 intron CG32532 - chrX 19542198 intron CG32532 - chrX 19542288 intron CG32532 - chrX_22_19540001 chrX_19540001 RAL-304_100b 4594 chrX 19593925 19593936 chrX 19594035 19594046 10 110 28.5 14.5 21.5 0.4 121 chrX 19593925 exon CG14205 + chrX 19593986 exon CG14205 + chrX 19594046 intron CG14205 + chrX_10_19590001 chrX_19590001 RAL-304_100b 4595 chrX 19593939 19593976 chrX 19594032 19594086 31 107 9.0 13.0 11.0 2.6 147 chrX 19593939 exon CG14205 + chrX 19594012 intron CG14205 + chrX 19594086 exon CG14205 + chrX_31_19590001 chrX_19590001 RAL-304_100b 4596 chrX 19595713 19595744 chrX 19595827 19595858 13 113 2.5 6.5 4.5 2.4 145 chrX 19595713 intergenic CG14205 + chrX 19595786 intergenic CG14205 + chrX 19595858 intergenic CG14205 + chrX_13_19595001 chrX_19595001 RAL-304_100b 4597 chrX 19662010 19662057 chrX 19662258 19662300 34 246 7.5 9.0 8.2 3.7 290 chrX 19662010 intron CG14223 - chrX 19662155 intron CG14223 - chrX 19662300 intron CG14223 - chrX_34_19660001 chrX_19660001 RAL-304_100b 4598 chrX 12946233 12946235 chrX 19741473 19741476 roo 4 6795240 38.5 49.5 44.0 0.1 6795243 chrX 12946233 3` UTR fne + chrX 16343854 intergenic not near genes chrX 19741476 intron,3` UTR CoVIb -,CG18809 - chrX_4_16340001 chrX_16340001 RAL-304_100b 4599 chrX 19744606 19744641 chrX 19744757 19744792 6 148 89.0 82.0 85.5 0.1 186 chrX 19744606 5` UTR,exon CG33932 +,Rpp20 + chrX 19744699 intron,intron CG33932 +,Rpp20 + chrX 19744792 5` UTR,exon CG33932 +,Rpp20 + chrX_6_19740001 chrX_19740001 RAL-304_100b 4600 chrX 19744642 19744660 chrX 19744752 19744779 20 128 85.5 79.0 82.2 0.2 137 chrX 19744642 5` UTR,exon CG33932 +,Rpp20 + chrX 19744710 intron,intron CG33932 +,Rpp20 + chrX 19744779 5` UTR,exon CG33932 +,Rpp20 + chrX_20_19740001 chrX_19740001 RAL-304_100b 4601 chrX 19756100 19756153 chrX 19756211 19756223 12 103 7.5 3.5 5.5 1.8 123 chrX 19756100 intron Pmp70 + chrX 19756162 intron Pmp70 + chrX 19756223 intron Pmp70 + chrX_12_19755001 chrX_19755001 RAL-304_100b 4602 chrX 19762562 19762605 chrX 19762667 19762698 15 102 5.0 1.5 3.2 3.6 136 chrX 19762562 5` UTR CG12702 - chrX 19762630 5` UTR CG12702 - chrX 19762698 5` UTR CG12702 - chrX_15_19760001 chrX_19760001 RAL-304_100b 4603 chrX 19769490 19769508 chrX 19769592 19769610 15 101 16.5 17.0 16.8 0.8 120 chrX 19769490 exon vfl - chrX 19769550 intron vfl - chrX 19769610 intron vfl - chrX_15_19765001 chrX_19765001 RAL-304_100b 4604 chrX 19797321 19797340 chrX 19804661 19804678 Stalker4 12 7337 39.0 11.0 25.0 0.5 7357 chrX 19797321 intergenic not near genes chrX 19801000 intergenic not near genes chrX 19804678 intergenic not near genes chrX_12_19800001 chrX_19800001 RAL-304_100b 4605 chrX 19813212 19813226 chrX 19816619 19816620 Gypsy12A_LTR 4 3402 23.5 65.5 44.5 0.1 3408 chrX 19813212 exon skpD + chrX 19814916 intergenic not near genes chrX 19816620 3` UTR skpC + chrX_4_19810001 chrX_19810001 RAL-304_100b 4606 chrX 19813304 19813317 chrX 19816608 19816610 Gypsy12A_LTR 4 3296 9.5 68.5 39.0 0.1 3306 chrX 19813304 3` UTR skpD + chrX 19814957 intergenic not near genes chrX 19816610 exon skpC + chrX_4_19810001 chrX_19810001 RAL-304_100b 4607 chrX 19813302 19813311 chrX 19816611 19816619 4 3301 9.5 66.5 38.0 0.1 3317 chrX 19813302 3` UTR skpD + chrX 19814960 intergenic not near genes chrX 19816619 3` UTR skpC + chrX_4_19810001 chrX_19810001 RAL-304_100b 4608 chrX 19881429 19881485 chrX 19881535 19881591 34 101 6.0 5.0 5.5 5.2 162 chrX 19881429 intron Hers + chrX 19881510 intron Hers + chrX 19881591 intron Hers + chrX_34_19880001 chrX_19880001 RAL-304_100b 4609 chrX 19883743 19883798 chrX 19883853 19883908 42 106 9.0 14.0 11.5 3.4 165 chrX 19883743 intron Hers + chrX 19883826 intron Hers + chrX 19883908 intron Hers + chrX_42_19880001 chrX_19880001 RAL-304_100b 4610 chrX 19897365 19897416 chrX 19897462 19897514 52 99 10.5 15.0 12.8 3.8 149 chrX 19897365 intron Hers + chrX 19897440 intron Hers + chrX 19897514 intron Hers + chrX_52_19895001 chrX_19895001 RAL-304_100b 4611 chrX 19971770 19971826 chrX 19971950 19972002 44 178 8.0 8.5 8.2 4.8 232 chrX 19971770 intergenic not near genes chrX 19971886 intergenic not near genes chrX 19972002 intergenic not near genes chrX_44_19970001 chrX_19970001 RAL-304_100b 4612 chrX 19983848 19983895 chrX 19983953 19984000 19 103 0.0 6.5 3.2 4.5 152 chrX 19983848 intergenic not near genes chrX 19983924 intergenic not near genes chrX 19984000 intergenic not near genes chrX_19_19980001 chrX_19980001 RAL-304_100b 4613 chrX 19992393 19992428 chrX 19992494 19992502 23 96 17.0 30.0 23.5 0.9 109 chrX 19992393 intergenic not near genes chrX 19992448 intergenic not near genes chrX 19992502 intergenic not near genes chrX_23_19990001 chrX_19990001 RAL-304_100b 4614 chrX 20007963 20007976 chrX 20008086 20008086 6 121 22.5 0.0 11.2 0.5 123 chrX 20007963 intron Dop2R - chrX 20008024 intron Dop2R - chrX 20008086 intron Dop2R - chrX_6_20005001 chrX_20005001 RAL-304_100b 4615 chrX 20041505 20041565 chrX 20041610 20041635 25 101 11.5 9.5 10.5 2.2 130 chrX 20041505 intron Dop2R - chrX 20041570 intron Dop2R - chrX 20041635 intron Dop2R - chrX_25_20040001 chrX_20040001 RAL-304_100b 4616 chrX 20057096 20057164 chrX 20057209 20057240 18 84 8.5 18.5 13.5 1.2 144 chrX 20057096 intron Dop2R - chrX 20057168 intron Dop2R - chrX 20057240 intron Dop2R - chrX_18_20055001 chrX_20055001 RAL-304_100b 4617 chrX 20086434 20086454 chrX 20086560 20086565 16 124 15.0 9.5 12.2 1.2 131 chrX 20086434 intergenic not near genes chrX 20086500 intergenic not near genes chrX 20086565 intergenic not near genes chrX_16_20085001 chrX_20085001 RAL-304_100b 4618 chrX 20086455 20086482 chrX 20086556 20086582 15 120 10.0 8.5 9.2 1.5 127 chrX 20086455 intergenic not near genes chrX 20086518 intergenic not near genes chrX 20086582 intergenic not near genes chrX_15_20085001 chrX_20085001 RAL-304_100b 4619 chrX 20090580 20090590 chrX 20090684 20090694 4 104 19.5 34.5 27.0 0.1 114 chrX 20090580 intergenic CR45628 + chrX 20090637 intergenic CR45628 + chrX 20090694 5` UTR CR45628 + chrX_4_20090001 chrX_20090001 RAL-304_100b 4620 chrX 20090592 20090611 chrX 20090681 20090715 11 96 10.5 33.0 21.8 0.5 123 chrX 20090592 intergenic CR45628 + chrX 20090654 5` UTR CR45628 + chrX 20090715 5` UTR CR45628 + chrX_11_20090001 chrX_20090001 RAL-304_100b 4621 chrX 20103930 20103982 chrX 20104045 20104097 28 110 13.0 9.5 11.2 2.3 167 chrX 20103930 intergenic not near genes chrX 20104014 intergenic not near genes chrX 20104097 intergenic not near genes chrX_28_20100001 chrX_20100001 RAL-304_100b 4622 chrX 20105195 20105239 chrX 20105289 20105332 19 100 109.5 105.5 107.5 0.2 137 chrX 20105195 intergenic not near genes chrX 20105264 intergenic not near genes chrX 20105332 intergenic not near genes chrX_19_20105001 chrX_20105001 RAL-304_100b 4623 chrX 20125370 20125397 chrX 20125477 20125493 12 105 0.0 11.0 5.5 1.8 123 chrX 20125370 intergenic CG34331 + chrX 20125432 intergenic CG34331 + chrX 20125493 intergenic CG34331 + chrX_12_20125001 chrX_20125001 RAL-304_100b 4624 chrX 20132278 20132308 chrX 20132386 20132416 16 106 21.0 16.5 18.8 0.8 138 chrX 20132278 intergenic not near genes chrX 20132347 intergenic not near genes chrX 20132416 intergenic not near genes chrX_16_20130001 chrX_20130001 RAL-304_100b 4625 chrX 20271479 20271527 chrX 20271596 20271629 11 115 7.0 0.0 3.5 2.4 150 chrX 20271479 intergenic not near genes chrX 20271554 intergenic not near genes chrX 20271629 intergenic not near genes chrX_11_20270001 chrX_20270001 RAL-304_100b 4626 chrX 20312863 20312911 chrX 20312961 20313014 27 101 10.0 9.5 9.8 2.5 151 chrX 20312863 intron CG1504 - chrX 20312938 intron CG1504 - chrX 20313014 intron CG1504 - chrX_27_20310001 chrX_20310001 RAL-304_100b 4627 chrX 20320278 20320308 chrX 20320380 20320410 18 100 6.5 9.0 7.8 2.0 132 chrX 20320278 intron CG1504 - chrX 20320344 intron CG1504 - chrX 20320410 intron CG1504 - chrX_18_20320001 chrX_20320001 RAL-304_100b 4628 chrX 20357330 20357384 chrX 20357431 20357486 37 99 13.0 16.5 14.8 2.3 156 chrX 20357330 intergenic not near genes chrX 20357408 intergenic not near genes chrX 20357486 intergenic not near genes chrX_37_20355001 chrX_20355001 RAL-304_100b 4629 chrX 20359114 20359170 chrX 20359215 20359273 35 97 9.0 12.5 10.8 3.0 159 chrX 20359114 intergenic not near genes chrX 20359194 intergenic not near genes chrX 20359273 intergenic not near genes chrX_35_20355001 chrX_20355001 RAL-304_100b 4630 chrX 20369295 20369342 chrX 20369404 20369451 35 107 8.5 11.5 10.0 3.2 156 chrX 20369295 intergenic not near genes chrX 20369373 intergenic not near genes chrX 20369451 intergenic not near genes chrX_35_20365001 chrX_20365001 RAL-304_100b 4631 chrX 20377325 20377327 chrX 20378817 20378819 hobo 4 1492 27.5 34.0 30.8 0.1 1494 chrX 20377325 intergenic not near genes chrX 20378072 intergenic not near genes chrX 20378819 intergenic not near genes chrX_4_20375001 chrX_20375001 RAL-304_100b 4632 chrX 20377331 20377348 chrX 20378806 20378820 hobo 13 1487 16.5 30.5 23.5 0.5 1489 chrX 20377331 intergenic not near genes chrX 20378076 intergenic not near genes chrX 20378820 intergenic not near genes chrX_13_20375001 chrX_20375001 RAL-304_100b 4633 chrX 20415053 20415087 chrX 20415154 20415188 7 99 8.5 5.5 7.0 0.9 135 chrX 20415053 intergenic not near genes chrX 20415120 intergenic not near genes chrX 20415188 intergenic not near genes chrX_7_20415001 chrX_20415001 RAL-304_100b 4634 chrX 20426177 20426213 chrX 20428346 20428407 48 2179 116.5 141.5 129.0 0.4 2230 chrX 20426177 exon cactin + chrX 20427292 intergenic CG11710 -,CG15456 - chrX 20428407 exon CG11710 - chrX_48_20425001 chrX_20425001 RAL-304_100b 4635 chrX 20443160 20443175 chrX 20443261 20443265 15 98 25.5 19.5 22.5 0.6 105 chrX 20443160 exon CG1695 + chrX 20443212 intron CG1695 + chrX 20443265 intron CG1695 + chrX_15_20440001 chrX_20440001 RAL-304_100b 4636 chrX 20443176 20443205 chrX 20443250 20443305 30 94 18.0 14.0 16.0 1.8 129 chrX 20443176 exon CG1695 + chrX 20443240 intron CG1695 + chrX 20443305 intron CG1695 + chrX_30_20440001 chrX_20440001 RAL-304_100b 4637 chrX 20456631 20456687 chrX 20456758 20456814 26 123 8.0 6.0 7.0 3.2 183 chrX 20456631 intron CG32506 + chrX 20456722 intron CG32506 + chrX 20456814 intron CG32506 + chrX_26_20455001 chrX_20455001 RAL-304_100b 4638 chrX 20468003 20468041 chrX 20468106 20468114 11 105 5.0 0.0 2.5 3.1 111 chrX 20468003 intron GstT3 + chrX 20468058 intron GstT3 + chrX 20468114 intron GstT3 + chrX_11_20465001 chrX_20465001 RAL-304_100b 4639 chrX 20499130 20499189 chrX 20499238 20499296 39 102 11.0 10.5 10.8 3.3 166 chrX 20499130 intron RhoGAP19D - chrX 20499213 intron RhoGAP19D - chrX 20499296 intron RhoGAP19D - chrX_39_20495001 chrX_20495001 RAL-304_100b 4640 chrX 20504102 20504158 chrX 20505648 20505689 transib2 45 1542 12.0 16.0 14.0 3.0 1587 chrX 20504102 intron RhoGAP19D - chrX 20504896 intron RhoGAP19D - chrX 20505689 intron RhoGAP19D - chrX_45_20500001 chrX_20500001 RAL-304_100b 4641 chrX 20528575 20528628 chrX 20528948 20528995 35 370 15.0 7.0 11.0 2.9 420 chrX 20528575 intergenic not near genes chrX 20528785 intergenic not near genes chrX 20528995 intergenic not near genes chrX_35_20525001 chrX_20525001 RAL-304_100b 4642 chrX 20531670 20531713 chrX 20531785 20531820 10 114 1.0 6.5 3.8 2.1 150 chrX 20531670 intergenic not near genes chrX 20531745 intergenic not near genes chrX 20531820 intergenic not near genes chrX_10_20530001 chrX_20530001 RAL-304_100b 4643 chrX 9181405 9181408 chrX 20533036 20533047 6 11351633 15.0 30.0 22.5 0.3 11351642 chrX 9181405 3` UTR mei-P26 + chrX 14857226 intron Flo2 + chrX 20533047 intergenic not near genes chrX_6_14855001 chrX_14855001 RAL-304_100b 4644 chrX 20560232 20560283 chrX 20560357 20560408 27 125 8.5 7.5 8.0 3.0 176 chrX 20560232 intron RunxB + chrX 20560320 intron RunxB + chrX 20560408 intron RunxB + chrX_27_20560001 chrX_20560001 RAL-304_100b 4645 chrX 20575130 20575172 chrX 20575233 20575275 25 100 12.0 8.5 10.2 2.2 145 chrX 20575130 intergenic CG42580 + chrX 20575202 intergenic not near genes chrX 20575275 intergenic not near genes chrX_25_20575001 chrX_20575001 RAL-304_100b 4646 chrX 20575176 20575180 chrX 20575279 20575283 5 103 10.0 17.5 13.8 0.3 107 chrX 20575176 intergenic CG42580 + chrX 20575230 intergenic not near genes chrX 20575283 intergenic not near genes chrX_5_20575001 chrX_20575001 RAL-304_100b 4647 chrX 20575181 20575185 chrX 20575269 20575288 7 99 9.5 15.0 12.2 0.5 107 chrX 20575181 intergenic CG42580 + chrX 20575234 intergenic not near genes chrX 20575288 intergenic not near genes chrX_7_20575001 chrX_20575001 RAL-304_100b 4648 chrX 20662286 20662342 chrX 20662394 20662446 14 106 5.0 0.5 2.8 3.7 160 chrX 20662286 intron CG1835 + chrX 20662366 intron CG1835 + chrX 20662446 intron CG1835 + chrX_14_20660001 chrX_20660001 RAL-304_100b 4649 chrX 20708361 20708367 chrX 20708463 20708469 5 102 26.5 31.0 28.8 0.2 108 chrX 20708361 intergenic not near genes chrX 20708415 intergenic not near genes chrX 20708469 intergenic not near genes chrX_5_20705001 chrX_20705001 RAL-304_100b 4650 chrX 20708370 20708392 chrX 20708462 20708484 15 97 21.5 30.5 26.0 0.6 114 chrX 20708370 intergenic not near genes chrX 20708427 intergenic not near genes chrX 20708484 intergenic not near genes chrX_15_20705001 chrX_20705001 RAL-304_100b 4651 chrX 20710416 20710441 chrX 20710510 20710544 11 102 2.5 6.5 4.5 2.0 128 chrX 20710416 intergenic not near genes chrX 20710480 intergenic not near genes chrX 20710544 intergenic not near genes chrX_11_20710001 chrX_20710001 RAL-304_100b 4652 chrX 20719181 20719201 chrX 20719533 20719559 25 356 10.0 19.5 14.8 1.6 378 chrX 20719181 intergenic not near genes chrX 20719370 intergenic not near genes chrX 20719559 intergenic not near genes chrX_25_20715001 chrX_20715001 RAL-304_100b 4653 chrX 20721726 20721876 chrX 20721868 20721998 14 134 0.0 0.0 0.0 14.0 272 chrX 20721726 intergenic not near genes chrX 20721862 intergenic not near genes chrX 20721998 intergenic not near genes chrX_14_20720001 chrX_20720001 RAL-304_100b 4654 chrX 20810696 20810708 chrX 20810799 20810811 8 103 15.0 9.5 12.2 0.6 115 chrX 20810696 intron shakB - chrX 20810754 intron shakB - chrX 20810811 intron shakB - chrX_8_20810001 chrX_20810001 RAL-304_100b 4655 chrX 20814169 20814229 chrX 20814288 20814337 48 114 14.5 13.0 13.8 3.2 168 chrX 20814169 intron shakB - chrX 20814253 intron shakB - chrX 20814337 intron shakB - chrX_48_20810001 chrX_20810001 RAL-304_100b 4656 chrX 20836700 20836758 chrX 20844327 20844378 roo 32 7626 4.5 3.5 4.0 6.4 7678 chrX 20836700 intron shakB - chrX 20840539 intron shakB - chrX 20844378 intron shakB - chrX_32_20840001 chrX_20840001 RAL-304_100b 4657 chrX 20860219 20860280 chrX 20860343 20860404 27 123 7.5 6.5 7.0 3.4 185 chrX 20860219 intron shakB - chrX 20860312 intron shakB - chrX 20860404 intron shakB - chrX_27_20860001 chrX_20860001 RAL-304_100b 4658 chrX 20874795 20874804 chrX 20874906 20874916 7 112 33.0 28.5 30.8 0.2 121 chrX 20874795 intron shakB - chrX 20874856 intron shakB - chrX 20874916 intron shakB - chrX_7_20870001 chrX_20870001 RAL-304_100b 4659 chrX 20874805 20874832 chrX 20874902 20874939 26 107 22.5 26.0 24.2 1.0 134 chrX 20874805 intron shakB - chrX 20874872 intron shakB - chrX 20874939 intron shakB - chrX_26_20870001 chrX_20870001 RAL-304_100b 4660 chrX 20915023 20915074 chrX 20915219 20915270 32 193 13.5 11.0 12.2 2.4 247 chrX 20915023 intron shakB - chrX 20915146 intron shakB - chrX 20915270 intron shakB - chrX_32_20915001 chrX_20915001 RAL-304_100b 4661 chrX 20940700 20940708 chrX 20942194 20942202 hobo 7 1494 38.0 8.0 23.0 0.3 1502 chrX 20940700 intergenic not near genes chrX 20941451 intergenic not near genes chrX 20942202 intergenic not near genes chrX_7_20940001 chrX_20940001 RAL-304_100b 4662 chrX 20940709 20940746 chrX 20942187 20942218 hobo 27 1491 22.5 6.0 14.2 1.8 1509 chrX 20940709 intergenic not near genes chrX 20941464 intergenic not near genes chrX 20942218 intergenic not near genes chrX_27_20940001 chrX_20940001 RAL-304_100b 4663 chrX 20948240 20948275 chrX 20948354 20948389 5 111 0.0 11.5 5.8 0.7 149 chrX 20948240 intergenic not near genes chrX 20948314 intergenic not near genes chrX 20948389 intergenic not near genes chrX_5_20945001 chrX_20945001 RAL-304_100b 4664 chrX 20974173 20974205 chrX 20974382 20974414 21 209 9.5 10.5 10.0 1.9 241 chrX 20974173 intergenic not near genes chrX 20974294 intergenic not near genes chrX 20974414 intergenic not near genes chrX_21_20970001 chrX_20970001 RAL-304_100b 4665 chrX 21022249 21022261 chrX 21022443 21022454 7 192 33.0 19.5 26.2 0.3 205 chrX 21022249 intergenic not near genes chrX 21022352 intergenic not near genes chrX 21022454 intergenic not near genes chrX_7_21020001 chrX_21020001 RAL-304_100b 4666 chrX 21022262 21022268 chrX 21022433 21022462 4 188 31.5 16.0 23.8 0.2 200 chrX 21022262 intergenic not near genes chrX 21022362 intergenic not near genes chrX 21022462 intergenic not near genes chrX_4_21020001 chrX_21020001 RAL-304_100b 4667 chrX 21029789 21029813 chrX 21029955 21029979 7 164 4.5 13.5 9.0 0.7 190 chrX 21029789 3` UTR CG1529 - chrX 21029884 3` UTR CG1529 - chrX 21029979 3` UTR CG1529 - chrX_7_21025001 chrX_21025001 RAL-304_100b 4668 chrX 21075171 21075221 chrX 21075274 21075281 6 90 4.0 0.0 2.0 2.0 110 chrX 21075171 intron bves + chrX 21075226 intron bves + chrX 21075281 intron bves + chrX_6_21075001 chrX_21075001 RAL-304_100b 4669 chrX 21076302 21076354 chrX 21076406 21076458 24 98 11.5 0.5 6.0 3.4 156 chrX 21076302 intron bves + chrX 21076380 intron bves + chrX 21076458 intron bves + chrX_24_21075001 chrX_21075001 RAL-304_100b 4670 chrX 21077577 21077631 chrX 21077690 21077744 15 111 8.5 5.5 7.0 1.9 167 chrX 21077577 intron bves + chrX 21077660 intron bves + chrX 21077744 intron bves + chrX_15_21075001 chrX_21075001 RAL-304_100b 4671 chrX 21078745 21078782 chrX 21078848 21078885 16 102 6.0 1.5 3.8 3.3 140 chrX 21078745 intron bves + chrX 21078815 intron bves + chrX 21078885 intron bves + chrX_16_21075001 chrX_21075001 RAL-304_100b 4672 chrX 21140890 21140904 chrX 21140997 21141011 4 107 16.0 1.5 8.8 0.4 121 chrX 21140890 3` UTR CG34120 + chrX 21140950 3` UTR CG34120 + chrX 21141011 intergenic CG34120 + chrX_4_21140001 chrX_21140001 RAL-304_100b 4673 chrX 21166115 21166165 chrX 21166218 21166271 18 103 5.0 4.0 4.5 3.3 156 chrX 21166115 intergenic not near genes chrX 21166193 intergenic not near genes chrX 21166271 intergenic not near genes chrX_18_21165001 chrX_21165001 RAL-304_100b 4674 chrX 21190551 21190824 chrX 21190732 21190930 40 131 2.0 0.5 1.2 18.2 379 chrX 21190551 intergenic not near genes chrX 21190740 intergenic not near genes chrX 21190930 intergenic not near genes chrX_40_21190001 chrX_21190001 RAL-304_100b 4675 chrX 21197032 21197090 chrX 21197135 21197148 52 94 12.5 12.5 12.5 3.9 116 chrX 21197032 intergenic not near genes chrX 21197090 intergenic not near genes chrX 21197148 intergenic not near genes chrX_52_21195001 chrX_21195001 RAL-304_100b 4676 chrX 21222042 21222100 chrX 21222152 21222210 22 105 6.0 7.5 6.8 2.8 168 chrX 21222042 intron CG32521 - chrX 21222126 intron CG32521 - chrX 21222210 intron CG32521 - chrX_22_21220001 chrX_21220001 RAL-304_100b 4677 chrX 21268045 21268056 chrX 21268151 21268162 9 105 16.5 8.5 12.5 0.7 117 chrX 21268045 intron CG32521 - chrX 21268104 intron CG32521 - chrX 21268162 intron CG32521 - chrX_9_21265001 chrX_21265001 RAL-304_100b 4678 chrX 21268058 21268087 chrX 21268149 21268193 28 102 9.0 7.0 8.0 3.1 135 chrX 21268058 intron CG32521 - chrX 21268126 intron CG32521 - chrX 21268193 intron CG32521 - chrX_28_21265001 chrX_21265001 RAL-304_100b 4679 chrX 21308847 21308873 chrX 21308978 21309024 8 132 15.0 0.0 7.5 0.9 177 chrX 21308847 exon CG1801 - chrX 21308936 intron CG1801 - chrX 21309024 intron CG1801 - chrX_8_21305001 chrX_21305001 RAL-304_100b 4680 chrX 21328100 21328145 chrX 21328229 21328279 12 132 4.0 4.5 4.2 2.3 179 chrX 21328100 3` UTR CG1486 + chrX 21328190 intergenic CG1486 +,tty - chrX 21328279 intergenic CG1486 +,tty - chrX_12_21325001 chrX_21325001 RAL-304_100b 4681 chrX 21388352 21388402 chrX 21388534 21388584 16 181 5.5 3.5 4.5 2.9 232 chrX 21388352 intergenic Hlc - chrX 21388468 intergenic not near genes chrX 21388584 intergenic mst + chrX_16_21385001 chrX_21385001 RAL-304_100b 4682 chrX 21428318 21428370 chrX 21428531 21428585 26 205 12.0 12.0 12.0 2.0 267 chrX 21428318 intron CG42343 - chrX 21428452 intron CG42343 - chrX 21428585 intron CG42343 - chrX_26_21425001 chrX_21425001 RAL-304_100b 4683 chrX 21454846 21454871 chrX 21454955 21454980 7 109 3.0 6.0 4.5 1.3 134 chrX 21454846 intron CG42343 - chrX 21454913 intron CG42343 - chrX 21454980 intron CG42343 - chrX_7_21450001 chrX_21450001 RAL-304_100b 4684 chrX 21455200 21455245 chrX 21455404 21455456 12 207 2.5 3.5 3.0 3.0 256 chrX 21455200 intron CG42343 - chrX 21455328 intron CG42343 - chrX 21455456 intron CG42343 - chrX_12_21455001 chrX_21455001 RAL-304_100b 4685 chrX 21458666 21458726 chrX 21464127 21464187 Ivk 30 5459 6.0 6.5 6.2 4.2 5521 chrX 21458666 intergenic not near genes chrX 21461426 intergenic not near genes chrX 21464187 intergenic not near genes chrX_30_21460001 chrX_21460001 RAL-304_100b 4686 chrX 21466988 21467038 chrX 21467097 21467147 28 108 10.5 11.5 11.0 2.3 159 chrX 21466988 intergenic CR45507 - chrX 21467068 intergenic CR45507 - chrX 21467147 3` UTR CR45507 - chrX_28_21465001 chrX_21465001 RAL-304_100b 4687 chrX 21474382 21474394 chrX 21474773 21474785 1731 15 391 35.5 11.0 23.2 0.6 403 chrX 21474382 intergenic not near genes chrX 21474584 intergenic not near genes chrX 21474785 intergenic not near genes chrX_15_21470001 chrX_21470001 RAL-304_100b 4688 chrX 21474396 21474435 chrX 21474772 21474826 1731 31 386 13.0 10.5 11.8 2.4 430 chrX 21474396 intergenic not near genes chrX 21474611 intergenic not near genes chrX 21474826 intergenic not near genes chrX_31_21470001 chrX_21470001 RAL-304_100b 4689 chrX 21492246 21492304 chrX 21492384 21492442 26 135 7.0 7.0 7.0 3.2 196 chrX 21492246 intergenic not near genes chrX 21492344 intergenic not near genes chrX 21492442 intergenic not near genes chrX_26_21490001 chrX_21490001 RAL-304_100b 4690 chrX 21500548 21500570 chrX 21500772 21500796 18 224 2.5 14.5 8.5 1.9 248 chrX 21500548 intron CR45082 - chrX 21500672 intron CR45082 - chrX 21500796 intron CR45082 - chrX_18_21500001 chrX_21500001 RAL-304_100b 4691 chrX 21565396 21565415 chrX 21565496 21565518 12 102 12.5 10.5 11.5 1.0 122 chrX 21565396 intergenic not near genes chrX 21565457 intergenic not near genes chrX 21565518 intergenic not near genes chrX_12_21565001 chrX_21565001 RAL-304_100b 4692 chrX 21565419 21565439 chrX 21565492 21565542 13 100 8.5 10.5 9.5 1.2 123 chrX 21565419 intergenic not near genes chrX 21565480 intergenic not near genes chrX 21565542 intergenic not near genes chrX_13_21565001 chrX_21565001 RAL-304_100b 4693 chrX 21567941 21567962 chrX 21568037 21568055 15 98 35.0 1.5 18.2 0.8 114 chrX 21567941 intergenic not near genes chrX 21567998 intergenic not near genes chrX 21568055 intergenic not near genes chrX_15_21565001 chrX_21565001 RAL-304_100b 4694 chrX 21573866 21573916 chrX 21573978 21573993 11 106 5.5 5.5 5.5 1.7 127 chrX 21573866 intergenic not near genes chrX 21573930 intergenic not near genes chrX 21573993 intergenic not near genes chrX_11_21570001 chrX_21570001 RAL-304_100b 4695 chrX 21575519 21575556 chrX 21575623 21575655 24 103 9.5 11.5 10.5 2.1 136 chrX 21575519 intergenic not near genes chrX 21575587 intergenic not near genes chrX 21575655 intergenic not near genes chrX_24_21575001 chrX_21575001 RAL-304_100b 4696 chrX 21581532 21581570 chrX 21581638 21581676 12 103 3.5 0.0 1.8 4.3 144 chrX 21581532 intergenic not near genes chrX 21581604 intergenic not near genes chrX 21581676 intergenic not near genes chrX_12_21580001 chrX_21580001 RAL-304_100b 4697 chrX 21595550 21595561 chrX 21598647 21598659 micropia 4 3096 8.0 24.0 16.0 0.2 3109 chrX 21595550 intergenic not near genes chrX 21597104 intergenic not near genes chrX 21598659 intergenic not near genes chrX_4_21595001 chrX_21595001 RAL-304_100b 4698 chrX 21602883 21602888 chrX 21603018 21603018 4 134 14.0 48.5 31.2 0.1 135 chrX 21602883 intron CG14476 - chrX 21602950 intron CG14476 - chrX 21603018 exon CG14476 - chrX_4_21600001 chrX_21600001 RAL-304_100b 4699 chrX 21668238 21668249 chrX 21668344 21668357 12 108 73.5 59.5 66.5 0.2 119 chrX 21668238 intergenic not near genes chrX 21668298 intergenic not near genes chrX 21668357 intergenic not near genes chrX_12_21665001 chrX_21665001 RAL-304_100b 4700 chrX 21668250 21668290 chrX 21668340 21668379 24 105 66.0 62.0 64.0 0.4 129 chrX 21668250 intergenic not near genes chrX 21668314 intergenic not near genes chrX 21668379 intergenic not near genes chrX_24_21665001 chrX_21665001 RAL-304_100b 4701 chrX 22406538 22406568 chrX 22406636 22406682 6 101 6.0 4.5 5.2 1.0 144 chrX 22406538 intergenic not near genes chrX 22406610 intergenic not near genes chrX 22406682 intergenic not near genes chrX_6_22405001 chrX_22405001 RAL-304_100b 4702 chrX 22478878 22478883 chrX 22479031 22479038 5 156 0.0 18.0 9.0 0.5 160 chrX 22478878 intron CG12576 - chrX 22478958 intron CG12576 - chrX 22479038 intron CG12576 - chrX_5_22475001 chrX_22475001 RAL-304_100b 4703 chrX 22478884 22478898 chrX 22479029 22479056 9 157 0.0 17.0 8.5 0.9 172 chrX 22478884 intron CG12576 - chrX 22478970 intron CG12576 - chrX 22479056 intron CG12576 - chrX_9_22475001 chrX_22475001 RAL-304_100b 4704 chrX 22522613 22522638 chrX 22525458 22525473 NOF 15 2843 14.5 5.5 10.0 1.4 2860 chrX 22522613 intron CG17600 + chrX 22524043 intron CG17600 + chrX 22525473 intron CG17600 + chrX_15_22520001 chrX_22520001 RAL-304_100b 4705 chrX 22564562 22564578 chrX 22575109 22575141 jockey 19 10550 33.5 22.5 28.0 0.7 10579 chrX 22564562 intergenic not near genes chrX 22569852 intergenic not near genes chrX 22575141 intergenic not near genes chrX_19_22565001 chrX_22565001 RAL-304_100b 4706 chrX 22585521 22585535 chrX 22585609 22585632 10 106 7.5 11.0 9.2 1.0 111 chrX 22585521 intron Cda4 - chrX 22585576 intron Cda4 - chrX 22585632 intron Cda4 - chrX_10_22585001 chrX_22585001 RAL-304_100b 4707 chrX 22660546 22660604 chrX 22660655 22660708 20 108 14.5 7.0 10.8 1.7 162 chrX 22660546 intron CR44997 + chrX 22660627 intron CR44997 + chrX 22660708 intron CR44997 + chrX_20_22660001 chrX_22660001 RAL-304_100b 4708 chrX 22661960 22661976 chrX 22662066 22662082 8 106 2.0 23.5 12.8 0.6 122 chrX 22661960 intron CR44997 + chrX 22662021 intron CR44997 + chrX 22662082 intron CR44997 + chrX_8_22660001 chrX_22660001 RAL-304_100b 4709 chrX 22665774 22665778 chrX 22665877 22665882 6 104 40.0 8.5 24.2 0.2 108 chrX 22665774 intron CR44997 + chrX 22665828 intron CR44997 + chrX 22665882 intron CR44997 + chrX_6_22665001 chrX_22665001 RAL-304_100b 4710 chrX 22665780 22665826 chrX 22665876 22665930 34 99 14.0 8.5 11.2 2.8 150 chrX 22665780 intron CR44997 + chrX 22665855 intron CR44997 + chrX 22665930 intron CR44997 + chrX_34_22665001 chrX_22665001 RAL-304_100b 4711 chrX 22697476 22697480 chrX 22701798 22701802 Juan 4 4322 31.0 16.0 23.5 0.2 4326 chrX 22697476 intron CR44997 + chrX 22699639 intron CR44997 + chrX 22701802 intron CR44997 + chrX_4_22695001 chrX_22695001 RAL-304_100b 4712 chrX 22697481 22697499 chrX 22701797 22701821 Juan 15 4320 26.0 15.0 20.5 0.7 4340 chrX 22697481 intron CR44997 + chrX 22699651 intron CR44997 + chrX 22701821 intron CR44997 + chrX_15_22695001 chrX_22695001 RAL-304_100b 4713 chrX 22697502 22697515 chrX 22701786 22701837 Juan 12 4317 15.5 9.5 12.5 0.9 4335 chrX 22697502 intron CR44997 + chrX 22699670 intron CR44997 + chrX 22701837 intron CR44997 + chrX_12_22695001 chrX_22695001 RAL-304_100b 4714 chrX 22771483 22771489 chrX 22774798 22774805 297 5 3316 23.0 13.0 18.0 0.3 3322 chrX 22771483 intron CR44997 + chrX 22773144 intron CR44997 + chrX 22774805 intron CR44997 + chrX_5_22770001 chrX_22770001 RAL-304_100b 4715 chrX 22771490 22771539 chrX 22774796 22774818 297 24 3306 11.5 13.0 12.2 1.8 3328 chrX 22771490 intron CR44997 + chrX 22773154 intron CR44997 + chrX 22774818 intron CR44997 + chrX_24_22770001 chrX_22770001 RAL-304_100b 4716 chrX 22776351 22776379 chrX 22776664 22776692 13 313 0.0 12.5 6.2 1.8 341 chrX 22776351 intron CR44997 + chrX 22776522 intron CR44997 + chrX 22776692 intron CR44997 + chrX_13_22775001 chrX_22775001 RAL-304_100b 4717 chrX 22784053 22784106 chrX 22784161 22784214 21 108 7.0 2.5 4.8 3.6 161 chrX 22784053 intron CR44997 + chrX 22784134 intron CR44997 + chrX 22784214 intron CR44997 + chrX_21_22780001 chrX_22780001 RAL-304_100b 4718 chrX 22798749 22798802 chrX 22798891 22798944 18 140 10.5 2.5 6.5 2.4 195 chrX 22798749 intergenic not near genes chrX 22798846 intergenic not near genes chrX 22798944 intergenic not near genes chrX_18_22795001 chrX_22795001 RAL-304_100b 4719 chrX 22811971 22811978 chrX 22816768 22816775 F-element 10 4796 30.0 13.5 21.8 0.4 4804 chrX 22811971 intergenic CG12446 - chrX 22814373 intergenic not near genes chrX 22816775 intergenic not near genes chrX_10_22810001 chrX_22810001 RAL-304_100b 4720 chrX 22811980 22812001 chrX 22816765 22816798 F-element 18 4794 18.5 13.0 15.8 1.1 4818 chrX 22811980 intergenic CG12446 - chrX 22814389 intergenic not near genes chrX 22816798 intergenic not near genes chrX_18_22810001 chrX_22810001 RAL-304_100b 4721 chrX 22824218 22824441 chrX 22824369 22824599 33 154 5.5 6.0 5.8 4.9 381 chrX 22824218 intergenic fog - chrX 22824408 3` UTR fog - chrX 22824599 3` UTR fog - chrX_33_22820001 chrX_22820001 RAL-304_100b 4722 chrX 22849816 22849868 chrX 22850074 22850125 27 256 5.0 7.0 6.0 3.9 309 chrX 22849816 intron,intron fog -,CG42346 + chrX 22849970 intron,intron fog -,CG42346 + chrX 22850125 intron,intron fog -,CG42346 + chrX_27_22845001 chrX_22845001 RAL-304_100b 4723 chrX 22862386 22862388 chrX 22862574 22862583 7 189 71.5 50.0 60.8 0.1 197 chrX 22862386 intron CG42346 + chrX 22862484 intron CG42346 + chrX 22862583 intron CG42346 + chrX_7_22860001 chrX_22860001 RAL-304_100b 4724 chrX 22867953 22867964 chrX 22868092 22868103 11 138 40.0 7.0 23.5 0.4 150 chrX 22867953 exon CG42346 + chrX 22868028 intron CG42346 + chrX 22868103 intron CG42346 + chrX_11_22865001 chrX_22865001 RAL-304_100b 4725 chrX 22867966 22868011 chrX 22868090 22868151 33 137 15.5 5.5 10.5 2.9 185 chrX 22867966 exon CG42346 + chrX 22868058 intron CG42346 + chrX 22868151 intron CG42346 + chrX_33_22865001 chrX_22865001 RAL-304_100b 4726 chrX 22870842 22870879 chrX 22870958 22870995 17 115 14.5 10.5 12.5 1.3 153 chrX 22870842 intron,3` UTR CG42346 +,CR43656 - chrX 22870918 intron,3` UTR CG42346 +,CR43656 - chrX 22870995 intron,3` UTR CG42346 +,CR43656 - chrX_17_22870001 chrX_22870001 RAL-304_100b 4727 chrX 22870880 22870899 chrX 22870957 22871001 22 108 7.5 10.0 8.8 2.2 121 chrX 22870880 intron,3` UTR CG42346 +,CR43656 - chrX 22870940 intron,3` UTR CG42346 +,CR43656 - chrX 22871001 intron,3` UTR CG42346 +,CR43656 - chrX_22_22870001 chrX_22870001 RAL-304_100b 4728 chrX 22895701 22895760 chrX 22895842 22895903 52 137 8.0 14.5 11.2 4.3 202 chrX 22895701 intergenic not near genes chrX 22895802 intergenic not near genes chrX 22895903 intergenic not near genes chrX_52_22895001 chrX_22895001 RAL-304_100b 4729 chrX 22982813 22982870 chrX 22983021 22983078 67 205 19.5 10.5 15.0 4.2 265 chrX 22982813 3` UTR,exon stnA -,stnB - chrX 22982946 intron,intron stnA -,stnB - chrX 22983078 intron,intron stnA -,stnB - chrX_67_22980001 chrX_22980001 RAL-304_100b 4730 chrX 22987080 22987136 chrX 22989764 22989780 Burdock 28 2676 3.0 7.0 5.0 4.7 2700 chrX 22987080 intron,intron stnA -,stnB - chrX 22988430 intron,intron stnA -,stnB - chrX 22989780 intron,intron stnA -,stnB - chrX_28_22985001 chrX_22985001 RAL-304_100b 4731 chrX 22996288 22996337 chrX 23003547 23003596 roo 31 7257 10.0 11.0 10.5 2.7 7308 chrX 22996288 intron,intron stnA -,stnB - chrX 22999942 intron,intron stnA -,stnB - chrX 23003596 intron,intron stnA -,stnB - chrX_31_22995001 chrX_22995001 RAL-304_100b 4732 chrY 655927 655963 chrY 656128 656164 5 201 3.5 2.5 3.0 1.2 237 chrY 655927 intron kl-2 + chrY 656046 intron kl-2 + chrY 656164 exon kl-2 + chrY_5_655001 chrY_655001 RAL-304_100b 4733 chrY 864693 864743 chrY 864795 864835 11 99 60.5 60.0 60.2 0.2 142 chrY 864693 intergenic not near genes chrY 864764 intergenic not near genes chrY 864835 intergenic not near genes chrY_11_860001 chrY_860001 RAL-304_100b 4734 chrY 975608 975823 chrY 975727 975919 47 127 665.5 614.0 639.8 0.1 311 chrY 975608 intergenic not near genes chrY 975764 intergenic not near genes chrY 975919 intergenic not near genes chrY_47_975001 chrY_975001 RAL-304_100b 4735 chrY 1419896 1419912 chrY 1420173 1420191 4 278 25.5 14.5 20.0 0.2 295 chrY 1419896 intergenic not near genes chrY 1420044 intergenic not near genes chrY 1420191 intergenic not near genes chrY_4_1420001 chrY_1420001 RAL-304_100b 4736 chrY 3664578 3664621 chrY 3664706 3664749 5 128 0.5 0.5 0.5 3.3 171 chrY 3664578 intergenic CG40948 + chrY 3664664 intergenic CG40948 + chrY 3664749 intergenic CG40948 + chrY_5_3660001 chrY_3660001 RAL-304_100b 4737 chrY 3666415 3666452 chrY 3666588 3666630 7 174 1.0 1.5 1.2 3.2 215 chrY 3666415 intergenic not near genes chrY 3666522 intergenic not near genes chrY 3666630 intergenic not near genes chrY_7_3665001 chrY_3665001 RAL-304_100b