SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 12951 12956 chr2L 13270 13275 6 319 96.0 104.0 100.0 0.1 324 chr2L 12951 intron l(2)gl - chr2L 13113 intron l(2)gl - chr2L 13275 intron l(2)gl - chr2L_6_10001 chr2L_10001 RAL-303_100b 2 chr2L 12945 12976 chr2L 13276 13320 27 324 99.5 103.0 101.2 0.3 375 chr2L 12945 intron l(2)gl - chr2L 13132 intron l(2)gl - chr2L 13320 intron l(2)gl - chr2L_27_10001 chr2L_10001 RAL-303_100b 3 chr2L 46326 46384 chr2L 46429 46487 29 101 8.0 7.0 7.5 3.4 161 chr2L 46326 intron Cda5 - chr2L 46406 intron Cda5 - chr2L 46487 intron Cda5 - chr2L_29_45001 chr2L_45001 RAL-303_100b 4 chr2L 47439 47453 chr2L 52569 52575 jockey 13 5129 39.5 23.5 31.5 0.4 5136 chr2L 47439 intron Cda5 - chr2L 50007 intron Cda5 - chr2L 52575 intron Cda5 - chr2L_13_50001 chr2L_50001 RAL-303_100b 5 chr2L 47454 47487 chr2L 52568 52607 jockey 41 5128 22.5 23.5 23.0 1.7 5153 chr2L 47454 intron Cda5 - chr2L 50030 intron Cda5 - chr2L 52607 intron Cda5 - chr2L_41_50001 chr2L_50001 RAL-303_100b 6 chr2L 89694 89748 chr2L 89790 89838 21 99 58.0 48.5 53.2 0.4 144 chr2L 89694 intergenic not near genes chr2L 89766 intergenic not near genes chr2L 89838 intergenic not near genes chr2L_21_85001 chr2L_85001 RAL-303_100b 7 chr2L 134838 134842 chr2L 134951 134955 4 113 52.0 45.0 48.5 0.1 117 chr2L 134838 intron CG11455 + chr2L 134896 intron CG11455 + chr2L 134955 intron CG11455 + chr2L_4_130001 chr2L_130001 RAL-303_100b 8 chr2L 172004 172087 chr2L 172138 172192 44 119 6.5 10.0 8.2 4.8 188 chr2L 172004 intron spen + chr2L 172098 intron spen + chr2L 172192 intron spen + chr2L_44_170001 chr2L_170001 RAL-303_100b 9 chr2L 179438 179483 chr2L 179542 179591 24 106 53.0 44.5 48.8 0.5 153 chr2L 179438 intron spen + chr2L 179514 intron spen + chr2L 179591 intron spen + chr2L_24_175001 chr2L_175001 RAL-303_100b 10 chr2L 259366 259413 chr2L 259472 259518 13 104 48.5 50.5 49.5 0.3 152 chr2L 259366 intron CG3645 - chr2L 259442 intron CG3645 - chr2L 259518 intron CG3645 - chr2L_13_255001 chr2L_255001 RAL-303_100b 11 chr2L 263274 263330 chr2L 263445 263498 29 170 33.0 44.0 38.5 0.7 224 chr2L 263274 intron,3` UTR CG3645 -,CG17075 - chr2L 263386 intron,3` UTR CG3645 -,CG17075 - chr2L 263498 intron,3` UTR CG3645 -,CG17075 - chr2L_29_260001 chr2L_260001 RAL-303_100b 12 chr2L 276548 276563 chr2L 276636 276671 7 97 35.0 35.0 35.0 0.2 123 chr2L 276548 intron CG17078 - chr2L 276610 intron CG17078 - chr2L 276671 intron CG17078 - chr2L_7_275001 chr2L_275001 RAL-303_100b 13 chr2L 297660 297719 chr2L 297785 297839 64 121 8.0 11.0 9.5 6.1 179 chr2L 297660 intergenic Hop +,Pi3K21B + chr2L 297750 intergenic Pi3K21B +,Hop + chr2L 297839 intergenic Pi3K21B +,Hop + chr2L_64_295001 chr2L_295001 RAL-303_100b 14 chr2L 312800 312857 chr2L 312904 312961 28 103 53.0 51.5 52.2 0.5 161 chr2L 312800 intron Plc21C + chr2L 312880 intron Plc21C + chr2L 312961 intron Plc21C + chr2L_28_310001 chr2L_310001 RAL-303_100b 15 chr2L 323431 323486 chr2L 323534 323584 39 100 45.5 41.0 43.2 0.9 153 chr2L 323431 intron Plc21C + chr2L 323508 intron Plc21C + chr2L 323584 intron Plc21C + chr2L_39_320001 chr2L_320001 RAL-303_100b 16 chr2L 325117 325133 chr2L 325211 325229 16 98 35.5 22.5 29.0 0.5 112 chr2L 325117 intron Plc21C + chr2L 325173 intron Plc21C + chr2L 325229 intron Plc21C + chr2L_16_325001 chr2L_325001 RAL-303_100b 17 chr2L 325135 325147 chr2L 325207 325249 16 97 28.0 24.0 26.0 0.6 114 chr2L 325135 intron Plc21C + chr2L 325192 intron Plc21C + chr2L 325249 intron Plc21C + chr2L_16_325001 chr2L_325001 RAL-303_100b 18 chr2L 325150 325151 chr2L 325206 325228 4 74 26.0 24.0 25.0 0.2 78 chr2L 325150 intron Plc21C + chr2L 325189 intron Plc21C + chr2L 325228 intron Plc21C + chr2L_4_325001 chr2L_325001 RAL-303_100b 19 chr2L 325807 325812 chr2L 325967 325972 4 160 69.5 55.5 62.5 0.1 165 chr2L 325807 exon,3` UTR Plc21C +,CG43755 - chr2L 325890 intron,exon Plc21C +,CG43755 - chr2L 325972 intron,exon Plc21C +,CG43755 - chr2L_4_325001 chr2L_325001 RAL-303_100b 20 chr2L 325814 325854 chr2L 325964 326014 21 156 54.0 55.0 54.5 0.4 200 chr2L 325814 exon,3` UTR Plc21C +,CG43755 - chr2L 325914 intron,exon Plc21C +,CG43755 - chr2L 326014 intron,exon Plc21C +,CG43755 - chr2L_21_325001 chr2L_325001 RAL-303_100b 21 chr2L 347858 347919 chr2L 355384 355444 blood 54 7523 10.5 20.0 15.2 3.3 7586 chr2L 347858 3` UTR Plc21C + chr2L 351651 intron Plc21C + chr2L 355444 3` UTR Plc21C + chr2L_54_350001 chr2L_350001 RAL-303_100b 22 chr2L 371421 371459 chr2L 371524 371563 25 104 12.0 19.0 15.5 1.5 142 chr2L 371421 intergenic not near genes chr2L 371492 intergenic not near genes chr2L 371563 intergenic not near genes chr2L_25_370001 chr2L_370001 RAL-303_100b 23 chr2L 407922 407973 chr2L 408028 408079 47 103 19.0 16.0 17.5 2.5 157 chr2L 407922 3` UTR RpI135 + chr2L 408000 intergenic AP-2alpha -,RpI135 + chr2L 408079 3` UTR AP-2alpha - chr2L_47_405001 chr2L_405001 RAL-303_100b 24 chr2L 467337 467491 chr2L 467461 467605 55 117 36.5 23.5 30.0 1.8 268 chr2L 467337 intron CG4297 - chr2L 467471 intron CG4297 - chr2L 467605 intron CG4297 - chr2L_55_465001 chr2L_465001 RAL-303_100b 25 chr2L 590593 590654 chr2L 590719 590779 43 123 41.5 35.0 38.2 1.1 186 chr2L 590593 intron Gsc - chr2L 590686 intron Gsc - chr2L 590779 intron Gsc - chr2L_43_590001 chr2L_590001 RAL-303_100b 26 chr2L 597169 597192 chr2L 597282 597313 15 118 85.0 87.5 86.2 0.2 144 chr2L 597169 intergenic not near genes chr2L 597241 intergenic not near genes chr2L 597313 intergenic not near genes chr2L_15_595001 chr2L_595001 RAL-303_100b 27 chr2L 602246 602262 chr2L 602384 602400 4 138 29.5 29.0 29.2 0.1 154 chr2L 602246 intergenic not near genes chr2L 602323 intergenic CG13689 + chr2L 602400 intergenic CG13689 + chr2L_4_600001 chr2L_600001 RAL-303_100b 28 chr2L 630303 630327 chr2L 630413 630444 15 115 36.0 38.5 37.2 0.4 141 chr2L 630303 intergenic not near genes chr2L 630374 intergenic not near genes chr2L 630444 intergenic not near genes chr2L_15_630001 chr2L_630001 RAL-303_100b 29 chr2L 632682 632702 chr2L 632786 632807 14 101 29.0 16.5 22.8 0.6 125 chr2L 632682 intergenic not near genes chr2L 632744 intergenic not near genes chr2L 632807 intergenic not near genes chr2L_14_630001 chr2L_630001 RAL-303_100b 30 chr2L 632703 632734 chr2L 632785 632787 15 88 20.5 15.0 17.8 0.8 84 chr2L 632703 intergenic not near genes chr2L 632745 intergenic not near genes chr2L 632787 intergenic not near genes chr2L_15_630001 chr2L_630001 RAL-303_100b 31 chr2L 633875 633894 chr2L 633983 634007 12 125 19.0 45.0 32.0 0.4 132 chr2L 633875 intergenic not near genes chr2L 633941 intergenic not near genes chr2L 634007 intergenic not near genes chr2L_12_630001 chr2L_630001 RAL-303_100b 32 chr2L 666253 666307 chr2L 666354 666403 31 99 47.5 40.0 43.8 0.7 150 chr2L 666253 intron ds - chr2L 666328 intron ds - chr2L 666403 intron ds - chr2L_31_665001 chr2L_665001 RAL-303_100b 33 chr2L 668411 668461 chr2L 668516 668566 18 103 44.5 37.5 41.0 0.4 155 chr2L 668411 intron ds - chr2L 668488 intron ds - chr2L 668566 intron ds - chr2L_18_665001 chr2L_665001 RAL-303_100b 34 chr2L 686912 686946 chr2L 695957 696011 roo 56 9060 19.0 12.5 15.8 3.3 9099 chr2L 686912 intron ds - chr2L 691462 intron ds - chr2L 696011 intron ds - chr2L_56_690001 chr2L_690001 RAL-303_100b 35 chr2L 746562 746572 chr2L 746663 746672 5 101 32.0 27.5 29.8 0.2 110 chr2L 746562 intergenic not near genes chr2L 746617 intergenic not near genes chr2L 746672 intergenic not near genes chr2L_5_745001 chr2L_745001 RAL-303_100b 36 chr2L 763570 763578 chr2L 763671 763678 4 101 47.0 35.0 41.0 0.1 108 chr2L 763570 intergenic not near genes chr2L 763624 intergenic not near genes chr2L 763678 intergenic not near genes chr2L_4_760001 chr2L_760001 RAL-303_100b 37 chr2L 763581 763630 chr2L 763670 763731 24 96 33.5 35.0 34.2 0.7 150 chr2L 763581 intergenic not near genes chr2L 763656 intergenic not near genes chr2L 763731 intergenic not near genes chr2L_24_760001 chr2L_760001 RAL-303_100b 38 chr2L 764528 764578 chr2L 764653 764703 24 124 43.5 45.5 44.5 0.5 175 chr2L 764528 intergenic not near genes chr2L 764616 intergenic not near genes chr2L 764703 intergenic not near genes chr2L_24_760001 chr2L_760001 RAL-303_100b 39 chr2L 770442 770463 chr2L 772246 772269 Bari1 23 1805 28.0 18.0 23.0 1.0 1827 chr2L 770442 intergenic not near genes chr2L 771356 intergenic not near genes chr2L 772269 intergenic CR44614 + chr2L_23_770001 chr2L_770001 RAL-303_100b 40 chr2L 770464 770494 chr2L 772244 772298 Bari1 25 1800 11.5 17.0 14.2 1.6 1834 chr2L 770464 intergenic not near genes chr2L 771381 intergenic not near genes chr2L 772298 intergenic CR44614 + chr2L_25_770001 chr2L_770001 RAL-303_100b 41 chr2L 795243 795251 chr2L 795373 795379 6 130 68.5 46.0 57.2 0.1 136 chr2L 795243 intergenic not near genes chr2L 795311 intergenic not near genes chr2L 795379 intergenic not near genes chr2L_6_795001 chr2L_795001 RAL-303_100b 42 chr2L 795253 795292 chr2L 795371 795436 20 133 50.0 46.5 48.2 0.4 183 chr2L 795253 intergenic not near genes chr2L 795344 intergenic not near genes chr2L 795436 intergenic not near genes chr2L_20_795001 chr2L_795001 RAL-303_100b 43 chr2L 804722 804728 chr2L 804933 804939 7 211 22.0 33.5 27.8 0.2 217 chr2L 804722 intergenic not near genes chr2L 804830 intergenic not near genes chr2L 804939 intergenic not near genes chr2L_7_800001 chr2L_800001 RAL-303_100b 44 chr2L 826879 826933 chr2L 826983 827032 33 102 39.0 45.5 42.2 0.8 153 chr2L 826879 intron dock + chr2L 826956 intron dock + chr2L 827032 intron dock + chr2L_33_825001 chr2L_825001 RAL-303_100b 45 chr2L 844920 844968 chr2L 845032 845037 28 106 38.5 44.5 41.5 0.7 117 chr2L 844920 intron drongo - chr2L 844978 intron drongo - chr2L 845037 intron drongo - chr2L_28_840001 chr2L_840001 RAL-303_100b 46 chr2L 849448 849481 chr2L 849564 849592 15 114 56.0 47.5 51.8 0.3 144 chr2L 849448 intron drongo - chr2L 849520 intron drongo - chr2L 849592 intron drongo - chr2L_15_845001 chr2L_845001 RAL-303_100b 47 chr2L 877815 877877 chr2L 877921 877983 46 102 19.0 17.5 18.2 2.4 168 chr2L 877815 3` UTR,exon CG15824 -,ninaA + chr2L 877899 3` UTR,intron CG15824 -,ninaA + chr2L 877983 3` UTR,exon CG15824 -,ninaA + chr2L_46_875001 chr2L_875001 RAL-303_100b 48 chr2L 927844 927847 chr2L 928014 928019 4 174 57.5 45.0 51.2 0.1 175 chr2L 927844 intron CG4341 + chr2L 927932 intron CG4341 + chr2L 928019 intron CG4341 + chr2L_4_925001 chr2L_925001 RAL-303_100b 49 chr2L 927849 927885 chr2L 928006 928062 23 170 43.0 41.0 42.0 0.5 213 chr2L 927849 intron CG4341 + chr2L 927956 intron CG4341 + chr2L 928062 intron CG4341 + chr2L_23_925001 chr2L_925001 RAL-303_100b 50 chr2L 936571 936583 chr2L 936686 936697 7 115 15.5 6.5 11.0 0.6 126 chr2L 936571 intron CG4341 + chr2L 936634 intron CG4341 + chr2L 936697 intron CG4341 + chr2L_7_935001 chr2L_935001 RAL-303_100b 51 chr2L 937033 937065 chr2L 937134 937166 15 100 36.5 49.0 42.8 0.3 133 chr2L 937033 intron CG4341 + chr2L 937100 intron CG4341 + chr2L 937166 intron CG4341 + chr2L_15_935001 chr2L_935001 RAL-303_100b 52 chr2L 941720 941779 chr2L 941872 941896 12 141 42.5 37.5 40.0 0.3 176 chr2L 941720 intron CG4341 + chr2L 941808 intron CG4341 + chr2L 941896 intron CG4341 + chr2L_12_940001 chr2L_940001 RAL-303_100b 53 chr2L 971895 971941 chr2L 972003 972057 20 100 34.5 37.5 36.0 0.5 162 chr2L 971895 intergenic not near genes chr2L 971976 intergenic not near genes chr2L 972057 intergenic not near genes chr2L_20_970001 chr2L_970001 RAL-303_100b 54 chr2L 976854 976854 chr2L 984515 984515 roo 4 7661 37.0 17.5 27.2 0.1 7661 chr2L 976854 intergenic not near genes chr2L 980684 intergenic not near genes chr2L 984515 intergenic not near genes chr2L_4_980001 chr2L_980001 RAL-303_100b 55 chr2L 976855 976913 chr2L 984514 984574 roo 37 7658 12.5 15.5 14.0 2.5 7719 chr2L 976855 intergenic not near genes chr2L 980714 intergenic not near genes chr2L 984574 intergenic not near genes chr2L_37_980001 chr2L_980001 RAL-303_100b 56 chr2L 996700 996743 chr2L 1005820 1005863 roo 23 9120 13.5 10.0 11.8 1.8 9163 chr2L 996700 intergenic not near genes chr2L 1001282 intergenic not near genes chr2L 1005863 intergenic not near genes chr2L_23_1000001 chr2L_1000001 RAL-303_100b 57 chr2L 1025095 1025119 chr2L 1025200 1025224 11 104 25.5 17.5 21.5 0.5 129 chr2L 1025095 intron IA-2 - chr2L 1025160 intron IA-2 - chr2L 1025224 intron IA-2 - chr2L_11_1025001 chr2L_1025001 RAL-303_100b 58 chr2L 1028841 1028873 chr2L 1028940 1028992 21 112 33.0 32.0 32.5 0.6 151 chr2L 1028841 intron IA-2 - chr2L 1028916 intron IA-2 - chr2L 1028992 intron IA-2 - chr2L_21_1025001 chr2L_1025001 RAL-303_100b 59 chr2L 1035534 1035593 chr2L 1035636 1035695 33 99 44.5 41.0 42.8 0.8 161 chr2L 1035534 intron IA-2 - chr2L 1035614 intron IA-2 - chr2L 1035695 intron IA-2 - chr2L_33_1035001 chr2L_1035001 RAL-303_100b 60 chr2L 1041328 1041384 chr2L 1041441 1041461 33 110 38.5 46.0 42.2 0.8 133 chr2L 1041328 intron IA-2 - chr2L 1041394 intron IA-2 - chr2L 1041461 intron IA-2 - chr2L_33_1040001 chr2L_1040001 RAL-303_100b 61 chr2L 1042580 1042611 chr2L 1042694 1042702 13 110 0.5 0.0 0.2 10.8 122 chr2L 1042580 intron IA-2 - chr2L 1042641 intron IA-2 - chr2L 1042702 intron IA-2 - chr2L_13_1040001 chr2L_1040001 RAL-303_100b 62 chr2L 1057476 1057520 chr2L 1057584 1057592 6 96 35.5 42.0 38.8 0.2 116 chr2L 1057476 intron S - chr2L 1057534 intron S - chr2L 1057592 intron S - chr2L_6_1055001 chr2L_1055001 RAL-303_100b 63 chr2L 1074037 1074091 chr2L 1074142 1074191 20 102 52.0 48.5 50.2 0.4 154 chr2L 1074037 intron S - chr2L 1074114 intron S - chr2L 1074191 intron S - chr2L_20_1070001 chr2L_1070001 RAL-303_100b 64 chr2L 1156834 1156894 chr2L 1156964 1157024 37 126 13.0 17.5 15.2 2.3 190 chr2L 1156834 intron capt - chr2L 1156929 intron capt - chr2L 1157024 intron capt - chr2L_37_1155001 chr2L_1155001 RAL-303_100b 65 chr2L 1220102 1220159 chr2L 1227593 1227650 blood 49 7490 20.0 9.0 14.5 3.2 7548 chr2L 1220102 intron CG42329 + chr2L 1223876 intron CG42329 + chr2L 1227650 intron CG42329 + chr2L_49_1220001 chr2L_1220001 RAL-303_100b 66 chr2L 1261135 1261142 chr2L 1261236 1261249 4 106 0.5 0.5 0.5 2.7 114 chr2L 1261135 intron robo3 + chr2L 1261192 intron robo3 + chr2L 1261249 intron robo3 + chr2L_4_1260001 chr2L_1260001 RAL-303_100b 67 chr2L 1261152 1261252 chr2L 1261224 1261347 20 102 0.5 0.0 0.2 16.7 195 chr2L 1261152 intron robo3 + chr2L 1261250 intron robo3 + chr2L 1261347 intron robo3 + chr2L_20_1260001 chr2L_1260001 RAL-303_100b 68 chr2L 1267383 1267401 chr2L 1267484 1267501 13 99 67.0 48.0 57.5 0.2 118 chr2L 1267383 intron robo3 + chr2L 1267442 intron robo3 + chr2L 1267501 intron robo3 + chr2L_13_1265001 chr2L_1265001 RAL-303_100b 69 chr2L 1267409 1267437 chr2L 1267483 1267533 17 98 49.0 47.0 48.0 0.3 124 chr2L 1267409 intron robo3 + chr2L 1267471 intron robo3 + chr2L 1267533 intron robo3 + chr2L_17_1265001 chr2L_1265001 RAL-303_100b 70 chr2L 1301749 1301783 chr2L 1302310 1302341 gypsy 12 561 0.0 29.5 14.8 0.8 592 chr2L 1301749 intergenic not near genes chr2L 1302045 intergenic not near genes chr2L 1302341 intergenic not near genes chr2L_12_1300001 chr2L_1300001 RAL-303_100b 71 chr2L 1322003 1322011 chr2L 1322117 1322125 5 114 46.5 31.0 38.8 0.1 122 chr2L 1322003 intergenic not near genes chr2L 1322064 intergenic not near genes chr2L 1322125 intergenic not near genes chr2L_5_1320001 chr2L_1320001 RAL-303_100b 72 chr2L 1322012 1322040 chr2L 1322116 1322154 9 111 37.0 31.0 34.0 0.3 142 chr2L 1322012 intergenic not near genes chr2L 1322083 intergenic not near genes chr2L 1322154 intergenic not near genes chr2L_9_1320001 chr2L_1320001 RAL-303_100b 73 chr2L 1322041 1322056 chr2L 1322115 1322119 7 99 33.5 31.0 32.2 0.2 78 chr2L 1322041 intergenic not near genes chr2L 1322080 intergenic not near genes chr2L 1322119 intergenic not near genes chr2L_7_1320001 chr2L_1320001 RAL-303_100b 74 chr2L 1336915 1336947 chr2L 1337183 1337215 26 267 14.5 41.5 28.0 0.9 300 chr2L 1336915 intergenic not near genes chr2L 1337065 intergenic not near genes chr2L 1337215 intergenic not near genes chr2L_26_1335001 chr2L_1335001 RAL-303_100b 75 chr2L 1336949 1336954 chr2L 1337181 1337222 7 259 14.0 41.0 27.5 0.2 273 chr2L 1336949 intergenic not near genes chr2L 1337086 intergenic not near genes chr2L 1337222 intergenic not near genes chr2L_7_1335001 chr2L_1335001 RAL-303_100b 76 chr2L 1343513 1343558 chr2L 1343731 1343776 17 217 52.0 43.0 47.5 0.4 263 chr2L 1343513 exon CG33922 - chr2L 1343644 intron CG33922 - chr2L 1343776 exon CG33922 - chr2L_17_1340001 chr2L_1340001 RAL-303_100b 77 chr2L 1458227 1458262 chr2L 1458329 1458362 16 101 54.5 56.0 55.2 0.3 135 chr2L 1458227 intergenic not near genes chr2L 1458294 intergenic not near genes chr2L 1458362 intergenic not near genes chr2L_16_1455001 chr2L_1455001 RAL-303_100b 78 chr2L 1508020 1508271 chr2L 1508128 1508383 34 108 41.0 35.0 38.0 0.9 363 chr2L 1508020 intergenic not near genes chr2L 1508202 intergenic not near genes chr2L 1508383 intergenic not near genes chr2L_34_1505001 chr2L_1505001 RAL-303_100b 79 chr2L 1536503 1536506 chr2L 1536660 1536663 4 157 8.5 42.5 25.5 0.2 160 chr2L 1536503 intergenic not near genes chr2L 1536583 intergenic not near genes chr2L 1536663 intergenic not near genes chr2L_4_1535001 chr2L_1535001 RAL-303_100b 80 chr2L 1536507 1536526 chr2L 1536646 1536682 8 152 11.5 33.0 22.2 0.3 175 chr2L 1536507 intergenic not near genes chr2L 1536594 intergenic not near genes chr2L 1536682 intergenic not near genes chr2L_8_1535001 chr2L_1535001 RAL-303_100b 81 chr2L 1537234 1537253 chr2L 1537490 1537504 10 256 45.5 26.0 35.8 0.3 270 chr2L 1537234 intergenic not near genes chr2L 1537369 intergenic not near genes chr2L 1537504 intergenic not near genes chr2L_10_1535001 chr2L_1535001 RAL-303_100b 82 chr2L 1570668 1570715 chr2L 1573565 1573612 F-element 41 2896 19.5 14.0 16.8 2.3 2944 chr2L 1570668 intron haf + chr2L 1572140 intron haf + chr2L 1573612 intron haf + chr2L_41_1570001 chr2L_1570001 RAL-303_100b 83 chr2L 1577233 1577284 chr2L 1577341 1577392 24 103 50.0 44.5 47.2 0.5 159 chr2L 1577233 intron haf + chr2L 1577312 intron haf + chr2L 1577392 intron haf + chr2L_24_1575001 chr2L_1575001 RAL-303_100b 84 chr2L 1590932 1590944 chr2L 1591033 1591045 7 99 62.5 46.0 54.2 0.1 113 chr2L 1590932 intron haf + chr2L 1590988 intron haf + chr2L 1591045 intron haf + chr2L_7_1590001 chr2L_1590001 RAL-303_100b 85 chr2L 1590945 1590990 chr2L 1591029 1591088 28 97 42.0 44.5 43.2 0.6 143 chr2L 1590945 intron haf + chr2L 1591016 intron haf + chr2L 1591088 intron haf + chr2L_28_1590001 chr2L_1590001 RAL-303_100b 86 chr2L 1611175 1611212 chr2L 1611289 1611326 7 113 41.5 36.5 39.0 0.2 151 chr2L 1611175 intergenic CG31935 -,CG14352 + chr2L 1611250 intergenic CG31935 -,CG14352 + chr2L 1611326 intergenic CG14352 +,CG31935 - chr2L_7_1610001 chr2L_1610001 RAL-303_100b 87 chr2L 1615379 1615415 chr2L 1615480 1615522 17 106 36.5 41.5 39.0 0.4 143 chr2L 1615379 intergenic not near genes chr2L 1615450 intergenic not near genes chr2L 1615522 intergenic not near genes chr2L_17_1615001 chr2L_1615001 RAL-303_100b 88 chr2L 1628818 1628856 chr2L 1628932 1628970 31 111 40.0 38.5 39.2 0.8 152 chr2L 1628818 intergenic not near genes chr2L 1628894 intergenic not near genes chr2L 1628970 intergenic not near genes chr2L_31_1625001 chr2L_1625001 RAL-303_100b 89 chr2L 1634737 1634764 chr2L 1634854 1634874 18 113 26.0 23.0 24.5 0.7 137 chr2L 1634737 intergenic not near genes chr2L 1634806 intergenic not near genes chr2L 1634874 intergenic not near genes chr2L_18_1630001 chr2L_1630001 RAL-303_100b 90 chr2L 1678937 1678948 chr2L 1686445 1686456 blood 6 7507 27.0 26.5 26.8 0.2 7519 chr2L 1678937 intron chinmo + chr2L 1682696 intron chinmo + chr2L 1686456 intron chinmo + chr2L_6_1680001 chr2L_1680001 RAL-303_100b 91 chr2L 1678951 1679006 chr2L 1686441 1686464 blood 41 7486 8.0 25.0 16.5 2.3 7513 chr2L 1678951 intron chinmo + chr2L 1682708 intron chinmo + chr2L 1686464 intron chinmo + chr2L_41_1680001 chr2L_1680001 RAL-303_100b 92 chr2L 1694378 1694431 chr2L 1694486 1694537 26 108 32.0 27.5 29.8 0.8 159 chr2L 1694378 exon chinmo + chr2L 1694458 intron chinmo + chr2L 1694537 intron chinmo + chr2L_26_1690001 chr2L_1690001 RAL-303_100b 93 chr2L 1711338 1711340 chr2L 1711683 1711689 mdg3 4 346 47.5 17.5 32.5 0.1 351 chr2L 1711338 3` UTR,3` UTR mRpL48 +,frtz - chr2L 1711514 3` UTR frtz - chr2L 1711689 3` UTR frtz - chr2L_4_1710001 chr2L_1710001 RAL-303_100b 94 chr2L 1711343 1711388 chr2L 1711680 1711737 mdg3 50 344 18.0 15.5 16.8 2.8 394 chr2L 1711343 3` UTR,3` UTR mRpL48 +,frtz - chr2L 1711540 3` UTR frtz - chr2L 1711737 3` UTR frtz - chr2L_50_1710001 chr2L_1710001 RAL-303_100b 95 chr2L 1721820 1721853 chr2L 1721913 1721946 12 106 33.0 48.0 40.5 0.3 126 chr2L 1721820 intron Rim2 - chr2L 1721883 intron Rim2 - chr2L 1721946 intron Rim2 - chr2L_12_1720001 chr2L_1720001 RAL-303_100b 96 chr2L 1724786 1724831 chr2L 1724887 1724938 27 105 46.5 45.0 45.8 0.6 152 chr2L 1724786 3` UTR Eno - chr2L 1724862 3` UTR Eno - chr2L 1724938 3` UTR Eno - chr2L_27_1720001 chr2L_1720001 RAL-303_100b 97 chr2L 1744784 1744834 chr2L 1744887 1744931 33 99 45.5 40.0 42.8 0.8 147 chr2L 1744784 intron CG17646 + chr2L 1744858 intron CG17646 + chr2L 1744931 exon CG17646 + chr2L_33_1740001 chr2L_1740001 RAL-303_100b 98 chr2L 1763086 1763113 chr2L 1763199 1763226 9 111 50.0 42.5 46.2 0.2 140 chr2L 1763086 intergenic not near genes chr2L 1763156 intergenic not near genes chr2L 1763226 intergenic not near genes chr2L_9_1760001 chr2L_1760001 RAL-303_100b 99 chr2L 1781106 1781129 chr2L 1781278 1781298 8 174 41.0 7.5 24.2 0.3 192 chr2L 1781106 intergenic not near genes chr2L 1781202 intergenic not near genes chr2L 1781298 intergenic not near genes chr2L_8_1780001 chr2L_1780001 RAL-303_100b 100 chr2L 1844674 1844702 chr2L 1844781 1844790 10 96 27.5 16.5 22.0 0.4 116 chr2L 1844674 exon wry + chr2L 1844732 intron wry + chr2L 1844790 intron wry + chr2L_10_1840001 chr2L_1840001 RAL-303_100b 101 chr2L 1883395 1883445 chr2L 1884002 1884050 8 605 28.5 45.0 36.8 0.2 655 chr2L 1883395 intron CG15358 - chr2L 1883722 intron CG15358 - chr2L 1884050 exon CG15358 - chr2L_8_1880001 chr2L_1880001 RAL-303_100b 102 chr2L 1887914 1887971 chr2L 1888123 1888180 31 199 48.0 40.5 44.2 0.7 266 chr2L 1887914 intron CG7337 + chr2L 1888047 intron CG7337 + chr2L 1888180 intron CG7337 + chr2L_31_1885001 chr2L_1885001 RAL-303_100b 103 chr2L 1921341 1921376 chr2L 1921633 1921638 14 290 37.5 43.0 40.2 0.3 297 chr2L 1921341 intron CG7337 + chr2L 1921490 intron CG7337 + chr2L 1921638 intron CG7337 + chr2L_14_1920001 chr2L_1920001 RAL-303_100b 104 chr2L 1944168 1944179 chr2L 1944277 1944288 9 109 20.0 54.0 37.0 0.2 120 chr2L 1944168 intergenic CG7337 + chr2L 1944228 intergenic CG7337 + chr2L 1944288 intergenic CG7337 + chr2L_9_1940001 chr2L_1940001 RAL-303_100b 105 chr2L 1944182 1944215 chr2L 1944273 1944324 18 105 33.5 50.0 41.8 0.4 142 chr2L 1944182 intergenic CG7337 + chr2L 1944253 intergenic CG7337 + chr2L 1944324 intergenic not near genes chr2L_18_1940001 chr2L_1940001 RAL-303_100b 106 chr2L 2001758 2001769 chr2L 2001861 2001861 7 101 46.5 14.0 30.2 0.2 103 chr2L 2001758 intron,5` UTR CG33543 -,CR43464 + chr2L 2001810 intron,5` UTR CG33543 -,CR43464 + chr2L 2001861 intron,5` UTR CG33543 -,CR43464 + chr2L_7_2000001 chr2L_2000001 RAL-303_100b 107 chr2L 2001786 2001816 chr2L 2001857 2001919 26 101 5.5 11.0 8.2 2.8 133 chr2L 2001786 intron,5` UTR CG33543 -,CR43464 + chr2L 2001852 intron,5` UTR CG33543 -,CR43464 + chr2L 2001919 intron,5` UTR CG33543 -,CR43464 + chr2L_26_2000001 chr2L_2000001 RAL-303_100b 108 chr2L 2016105 2016160 chr2L 2016210 2016265 16 104 35.5 44.5 40.0 0.4 160 chr2L 2016105 intron CG4238 + chr2L 2016185 intron CG4238 + chr2L 2016265 intron CG4238 + chr2L_16_2015001 chr2L_2015001 RAL-303_100b 109 chr2L 2024485 2024546 chr2L 2024598 2024659 21 112 40.0 34.5 37.2 0.5 174 chr2L 2024485 intron CG4238 + chr2L 2024572 intron CG4238 + chr2L 2024659 intron CG4238 + chr2L_21_2020001 chr2L_2020001 RAL-303_100b 110 chr2L 2049197 2049240 chr2L 2049301 2049343 16 105 33.5 54.5 44.0 0.4 146 chr2L 2049197 intergenic not near genes chr2L 2049270 intergenic not near genes chr2L 2049343 intergenic not near genes chr2L_16_2045001 chr2L_2045001 RAL-303_100b 111 chr2L 2073323 2073356 chr2L 2073431 2073459 11 105 26.0 40.0 33.0 0.3 136 chr2L 2073323 intron dpr3 - chr2L 2073391 intron dpr3 - chr2L 2073459 intron dpr3 - chr2L_11_2070001 chr2L_2070001 RAL-303_100b 112 chr2L 2085680 2085732 chr2L 2086044 2086096 19 363 39.0 31.0 35.0 0.5 416 chr2L 2085680 intron dpr3 - chr2L 2085888 intron dpr3 - chr2L 2086096 intron dpr3 - chr2L_19_2085001 chr2L_2085001 RAL-303_100b 113 chr2L 2100377 2100379 chr2L 2109543 2109552 roo 4 9172 38.5 23.0 30.8 0.1 9175 chr2L 2100377 intron dpr3 - chr2L 2104964 intron dpr3 - chr2L 2109552 intron dpr3 - chr2L_4_2100001 chr2L_2100001 RAL-303_100b 114 chr2L 2100382 2100408 chr2L 2109533 2109552 roo 26 9163 18.0 20.0 19.0 1.3 9170 chr2L 2100382 intron dpr3 - chr2L 2104967 intron dpr3 - chr2L 2109552 intron dpr3 - chr2L_26_2100001 chr2L_2100001 RAL-303_100b 115 chr2L 2112086 2112146 chr2L 2119773 2119777 opus 34 7670 5.0 16.5 10.8 2.9 7691 chr2L 2112086 intergenic not near genes chr2L 2115932 intergenic not near genes chr2L 2119777 intergenic not near genes chr2L_34_2115001 chr2L_2115001 RAL-303_100b 116 chr2L 2126898 2126937 chr2L 2126993 2127032 12 103 41.5 51.0 46.2 0.3 134 chr2L 2126898 intergenic CG4259 - chr2L 2126965 intergenic CG4259 - chr2L 2127032 intergenic CG4259 - chr2L_12_2125001 chr2L_2125001 RAL-303_100b 117 chr2L 2145726 2145778 chr2L 2145837 2145888 43 110 54.0 49.0 51.5 0.8 162 chr2L 2145726 3` UTR CG11723 - chr2L 2145807 3` UTR CG11723 - chr2L 2145888 3` UTR CG11723 - chr2L_43_2145001 chr2L_2145001 RAL-303_100b 118 chr2L 2250392 2250444 chr2L 2251184 2251186 21 786 46.0 31.5 38.8 0.5 794 chr2L 2250392 intergenic Ser12 - chr2L 2250789 exon Ser12 - chr2L 2251186 exon Ser12 - chr2L_21_2250001 chr2L_2250001 RAL-303_100b 119 chr2L 2260781 2260835 chr2L 2260892 2260941 44 110 12.5 14.0 13.2 3.1 160 chr2L 2260781 intergenic not near genes chr2L 2260861 intergenic not near genes chr2L 2260941 intergenic not near genes chr2L_44_2260001 chr2L_2260001 RAL-303_100b 120 chr2L 2262286 2262289 chr2L 2262388 2262391 4 102 62.0 41.5 51.8 0.1 105 chr2L 2262286 intergenic not near genes chr2L 2262338 intergenic not near genes chr2L 2262391 intergenic not near genes chr2L_4_2260001 chr2L_2260001 RAL-303_100b 121 chr2L 2262292 2262325 chr2L 2262383 2262386 17 95 51.5 40.5 46.0 0.4 94 chr2L 2262292 intergenic not near genes chr2L 2262339 intergenic not near genes chr2L 2262386 intergenic not near genes chr2L_17_2260001 chr2L_2260001 RAL-303_100b 122 chr2L 2282962 2283014 chr2L 2283142 2283199 25 182 42.5 46.0 44.2 0.6 237 chr2L 2282962 intergenic not near genes chr2L 2283080 intergenic not near genes chr2L 2283199 intergenic not near genes chr2L_25_2280001 chr2L_2280001 RAL-303_100b 123 chr2L 2290558 2290616 chr2L 2290659 2290717 18 98 42.5 45.0 43.8 0.4 159 chr2L 2290558 exon robl22E - chr2L 2290638 5` UTR robl22E - chr2L 2290717 5` UTR robl22E - chr2L_18_2290001 chr2L_2290001 RAL-303_100b 124 chr2L 2294031 2294075 chr2L 2299253 2299284 copia 32 5221 9.0 19.0 14.0 2.1 5253 chr2L 2294031 intergenic not near genes chr2L 2296658 intergenic not near genes chr2L 2299284 intergenic not near genes chr2L_32_2295001 chr2L_2295001 RAL-303_100b 125 chr2L 2317097 2317130 chr2L 2317293 2317326 16 196 72.0 83.0 77.5 0.2 229 chr2L 2317097 intron,intron CG9967 -,eys + chr2L 2317212 intron,intron CG9967 -,eys + chr2L 2317326 intron,intron CG9967 -,eys + chr2L_16_2315001 chr2L_2315001 RAL-303_100b 126 chr2L 2357160 2357216 chr2L 2357303 2357359 28 139 48.0 36.0 42.0 0.7 199 chr2L 2357160 5` UTR,intron CG9967 -,eys + chr2L 2357260 5` UTR,intron CG9967 -,eys + chr2L 2357359 intron eys + chr2L_28_2355001 chr2L_2355001 RAL-303_100b 127 chr2L 2372339 2372370 chr2L 2372450 2372475 14 110 34.0 33.0 33.5 0.4 136 chr2L 2372339 intergenic CG3609 - chr2L 2372407 intergenic CG3609 - chr2L 2372475 3` UTR CG3609 - chr2L_14_2370001 chr2L_2370001 RAL-303_100b 128 chr2L 2392131 2392181 chr2L 2392266 2392310 8 134 29.5 34.5 32.0 0.2 179 chr2L 2392131 intron VGlut + chr2L 2392220 intron VGlut + chr2L 2392310 intron VGlut + chr2L_8_2390001 chr2L_2390001 RAL-303_100b 129 chr2L 2396287 2396346 chr2L 2396433 2396492 16 143 27.5 37.5 32.5 0.5 205 chr2L 2396287 intron VGlut + chr2L 2396390 intron VGlut + chr2L 2396492 intron VGlut + chr2L_16_2395001 chr2L_2395001 RAL-303_100b 130 chr2L 2470641 2470692 chr2L 2470751 2470802 21 99 37.0 30.5 33.8 0.6 161 chr2L 2470641 intergenic not near genes chr2L 2470722 intergenic not near genes chr2L 2470802 intergenic not near genes chr2L_21_2470001 chr2L_2470001 RAL-303_100b 131 chr2L 2503690 2503742 chr2L 2504494 2504546 59 801 17.5 13.0 15.2 3.6 856 chr2L 2503690 intergenic not near genes chr2L 2504118 intergenic not near genes chr2L 2504546 intergenic not near genes chr2L_59_2500001 chr2L_2500001 RAL-303_100b 132 chr2L 2515991 2516025 chr2L 2516386 2516420 10 386 35.5 37.5 36.5 0.3 429 chr2L 2515991 intergenic not near genes chr2L 2516206 intergenic not near genes chr2L 2516420 intergenic not near genes chr2L_10_2515001 chr2L_2515001 RAL-303_100b 133 chr2L 2525182 2525230 chr2L 2525468 2525511 25 284 34.0 48.0 41.0 0.6 329 chr2L 2525182 intergenic not near genes chr2L 2525346 intergenic not near genes chr2L 2525511 intergenic not near genes chr2L_25_2525001 chr2L_2525001 RAL-303_100b 134 chr2L 2557200 2557218 chr2L 2557300 2557319 4 101 23.0 32.5 27.8 0.1 119 chr2L 2557200 intergenic not near genes chr2L 2557260 intergenic not near genes chr2L 2557319 intergenic not near genes chr2L_4_2555001 chr2L_2555001 RAL-303_100b 135 chr2L 2565518 2565562 chr2L 2571605 2571660 297 30 6094 20.5 12.0 16.2 1.7 6142 chr2L 2565518 exon Cyp309a2 - chr2L 2568589 intron Cyp309a2 - chr2L 2571660 exon Cyp309a2 - chr2L_30_2565001 chr2L_2565001 RAL-303_100b 136 chr2L 2587792 2587847 chr2L 2587896 2587951 21 100 44.0 44.5 44.2 0.5 159 chr2L 2587792 intergenic not near genes chr2L 2587872 intergenic not near genes chr2L 2587951 intergenic not near genes chr2L_21_2585001 chr2L_2585001 RAL-303_100b 137 chr2L 2618018 2618025 chr2L 2618122 2618129 6 104 45.5 35.0 40.2 0.1 111 chr2L 2618018 intergenic not near genes chr2L 2618074 intergenic not near genes chr2L 2618129 intergenic not near genes chr2L_6_2615001 chr2L_2615001 RAL-303_100b 138 chr2L 2618027 2618070 chr2L 2618121 2618172 20 99 37.0 34.5 35.8 0.5 145 chr2L 2618027 intergenic not near genes chr2L 2618100 intergenic not near genes chr2L 2618172 intergenic not near genes chr2L_20_2615001 chr2L_2615001 RAL-303_100b 139 chr2L 2653857 2653880 chr2L 2653966 2653974 9 105 31.5 12.0 21.8 0.4 117 chr2L 2653857 3` UTR Prosbeta4R1 + chr2L 2653916 3` UTR Prosbeta4R1 + chr2L 2653974 intergenic Prosbeta4R1 +,Or23a + chr2L_9_2650001 chr2L_2650001 RAL-303_100b 140 chr2L 2653058 2653117 chr2L 2654656 2654716 24 1601 100.5 107.5 104.0 0.2 1658 chr2L 2653058 5` UTR Prosbeta4R1 + chr2L 2653887 3` UTR Prosbeta4R1 + chr2L 2654716 exon Or23a + chr2L_24_2650001 chr2L_2650001 RAL-303_100b 141 chr2L 2661187 2661203 chr2L 2663037 2663054 I-element 10 1856 22.0 16.5 19.2 0.5 1867 chr2L 2661187 intergenic not near genes chr2L 2662120 intergenic not near genes chr2L 2663054 intergenic not near genes chr2L_10_2660001 chr2L_2660001 RAL-303_100b 142 chr2L 2661205 2661232 chr2L 2663036 2663046 I-element 27 1846 10.0 16.0 13.0 1.9 1841 chr2L 2661205 intergenic not near genes chr2L 2662126 intergenic not near genes chr2L 2663046 intergenic not near genes chr2L_27_2660001 chr2L_2660001 RAL-303_100b 143 chr2L 2667598 2667658 chr2L 2667702 2667745 44 100 44.5 43.5 44.0 1.0 147 chr2L 2667598 intergenic not near genes chr2L 2667672 intergenic not near genes chr2L 2667745 intergenic not near genes chr2L_44_2665001 chr2L_2665001 RAL-303_100b 144 chr2L 2669222 2669231 chr2L 2669368 2669370 4 145 30.0 4.0 17.0 0.2 148 chr2L 2669222 intergenic not near genes chr2L 2669296 intergenic not near genes chr2L 2669370 intergenic Gr23a + chr2L_4_2665001 chr2L_2665001 RAL-303_100b 145 chr2L 2692304 2692365 chr2L 2692410 2692455 30 102 40.0 38.5 39.2 0.7 151 chr2L 2692304 intron CG31690 + chr2L 2692380 intron CG31690 + chr2L 2692455 intron CG31690 + chr2L_30_2690001 chr2L_2690001 RAL-303_100b 146 chr2L 2698852 2698893 chr2L 2698956 2699005 20 110 28.5 42.0 35.2 0.6 153 chr2L 2698852 intron CG31690 + chr2L 2698928 intron CG31690 + chr2L 2699005 intron CG31690 + chr2L_20_2695001 chr2L_2695001 RAL-303_100b 147 chr2L 2703421 2703443 chr2L 2703529 2703552 10 107 54.0 71.0 62.5 0.2 131 chr2L 2703421 intron CG31690 + chr2L 2703486 intron CG31690 + chr2L 2703552 intron CG31690 + chr2L_10_2700001 chr2L_2700001 RAL-303_100b 148 chr2L 2713492 2713542 chr2L 2713616 2713666 17 120 36.0 34.0 35.0 0.5 174 chr2L 2713492 intron CG31690 + chr2L 2713579 intron CG31690 + chr2L 2713666 intron CG31690 + chr2L_17_2710001 chr2L_2710001 RAL-303_100b 149 chr2L 2749023 2749077 chr2L 2749880 2749934 17 851 3.0 30.5 16.8 1.0 911 chr2L 2749023 intron Pgk - chr2L 2749478 intron Pgk - chr2L 2749934 intron Pgk - chr2L_17_2745001 chr2L_2745001 RAL-303_100b 150 chr2L 2772587 2772623 chr2L 2779194 2779230 297 23 6603 16.5 21.5 19.0 1.1 6643 chr2L 2772587 3` UTR Syt1 - chr2L 2775908 intron Syt1 - chr2L 2779230 3` UTR Syt1 - chr2L_23_2775001 chr2L_2775001 RAL-303_100b 151 chr2L 2782887 2782933 chr2L 2782990 2783035 14 100 15.0 0.5 7.8 1.6 148 chr2L 2782887 intron Syt1 - chr2L 2782961 intron Syt1 - chr2L 2783035 intron Syt1 - chr2L_14_2780001 chr2L_2780001 RAL-303_100b 152 chr2L 2800587 2800608 chr2L 2800690 2800716 22 108 9.0 0.0 4.5 4.0 129 chr2L 2800587 intergenic not near genes chr2L 2800652 intergenic not near genes chr2L 2800716 intergenic not near genes chr2L_22_2800001 chr2L_2800001 RAL-303_100b 153 chr2L 2826518 2826522 chr2L 2826635 2826639 4 117 38.5 35.0 36.8 0.1 121 chr2L 2826518 intron Duox - chr2L 2826578 intron Duox - chr2L 2826639 intron Duox - chr2L_4_2825001 chr2L_2825001 RAL-303_100b 154 chr2L 2826524 2826574 chr2L 2826631 2826684 21 104 29.0 33.5 31.2 0.7 160 chr2L 2826524 intron Duox - chr2L 2826604 intron Duox - chr2L 2826684 intron Duox - chr2L_21_2825001 chr2L_2825001 RAL-303_100b 155 chr2L 2830398 2830423 chr2L 2830553 2830578 6 153 35.5 32.0 33.8 0.2 180 chr2L 2830398 intergenic Duox - chr2L 2830488 intergenic Duox - chr2L 2830578 intergenic Duox - chr2L_6_2830001 chr2L_2830001 RAL-303_100b 156 chr2L 2857795 2857829 chr2L 2857896 2857930 8 101 32.5 35.0 33.8 0.2 135 chr2L 2857795 intron CG2991 + chr2L 2857862 intron CG2991 + chr2L 2857930 intron CG2991 + chr2L_8_2855001 chr2L_2855001 RAL-303_100b 157 chr2L 2873413 2873469 chr2L 2873516 2873572 14 103 0.0 10.0 5.0 2.3 159 chr2L 2873413 intron CG31694 - chr2L 2873492 intron CG31694 - chr2L 2873572 intron CG31694 - chr2L_14_2870001 chr2L_2870001 RAL-303_100b 158 chr2L 2885357 2885396 chr2L 2885453 2885498 18 99 39.5 36.0 37.8 0.5 141 chr2L 2885357 intron NTPase - chr2L 2885428 intron NTPase - chr2L 2885498 intron NTPase - chr2L_18_2885001 chr2L_2885001 RAL-303_100b 159 chr2L 2909876 2909924 chr2L 2909985 2910032 27 107 22.0 26.0 24.0 1.1 156 chr2L 2909876 intron lilli + chr2L 2909954 intron lilli + chr2L 2910032 intron lilli + chr2L_27_2905001 chr2L_2905001 RAL-303_100b 160 chr2L 2909925 2909931 chr2L 2909983 2910026 9 91 19.5 26.0 22.8 0.4 101 chr2L 2909925 intron lilli + chr2L 2909976 intron lilli + chr2L 2910026 intron lilli + chr2L_9_2905001 chr2L_2905001 RAL-303_100b 161 chr2L 2933277 2933326 chr2L 2935479 2935528 pogo 26 2198 47.5 44.5 46.0 0.6 2251 chr2L 2933277 intron lilli + chr2L 2934402 intron lilli + chr2L 2935528 intron lilli + chr2L_26_2930001 chr2L_2930001 RAL-303_100b 162 chr2L 2937403 2937451 chr2L 2937496 2937553 34 101 35.5 28.5 32.0 1.0 150 chr2L 2937403 intron lilli + chr2L 2937478 intron lilli + chr2L 2937553 intron lilli + chr2L_34_2935001 chr2L_2935001 RAL-303_100b 163 chr2L 3001575 3001632 chr2L 3001683 3001711 20 96 40.5 39.0 39.8 0.5 136 chr2L 3001575 intron CG17265 + chr2L 3001643 intron CG17265 + chr2L 3001711 intron CG17265 + chr2L_20_3000001 chr2L_3000001 RAL-303_100b 164 chr2L 3073006 3073064 chr2L 3078234 3078292 copia 45 5227 15.5 15.5 15.5 2.7 5286 chr2L 3073006 intron toc - chr2L 3075649 intron toc - chr2L 3078292 intron toc - chr2L_45_3075001 chr2L_3075001 RAL-303_100b 165 chr2L 3108853 3108859 chr2L 3108947 3108961 10 99 64.5 50.0 57.2 0.2 108 chr2L 3108853 exon toc - chr2L 3108907 intron toc - chr2L 3108961 intron toc - chr2L_10_3105001 chr2L_3105001 RAL-303_100b 166 chr2L 3108862 3108899 chr2L 3108944 3109001 30 100 52.0 50.0 51.0 0.6 139 chr2L 3108862 intron toc - chr2L 3108932 intron toc - chr2L 3109001 intron toc - chr2L_30_3105001 chr2L_3105001 RAL-303_100b 167 chr2L 3134274 3134289 chr2L 3134375 3134390 6 101 43.5 61.0 52.2 0.1 116 chr2L 3134274 intron toc - chr2L 3134332 intron toc - chr2L 3134390 intron toc - chr2L_6_3130001 chr2L_3130001 RAL-303_100b 168 chr2L 3134927 3134957 chr2L 3135029 3135059 28 100 10.5 20.0 15.2 1.7 132 chr2L 3134927 intron toc - chr2L 3134993 intron toc - chr2L 3135059 intron toc - chr2L_28_3130001 chr2L_3130001 RAL-303_100b 169 chr2L 3191415 3191465 chr2L 3191536 3191586 16 117 24.5 33.0 28.8 0.5 171 chr2L 3191415 intron CG34393 - chr2L 3191500 intron CG34393 - chr2L 3191586 intron CG34393 - chr2L_16_3190001 chr2L_3190001 RAL-303_100b 170 chr2L 3192192 3192198 chr2L 3192328 3192334 4 136 53.0 26.5 39.8 0.1 142 chr2L 3192192 exon CG34393 - chr2L 3192263 intron CG34393 - chr2L 3192334 intron CG34393 - chr2L_4_3190001 chr2L_3190001 RAL-303_100b 171 chr2L 3192200 3192241 chr2L 3192319 3192377 28 126 23.0 22.5 22.8 1.2 177 chr2L 3192200 exon CG34393 - chr2L 3192288 intron CG34393 - chr2L 3192377 intron CG34393 - chr2L_28_3190001 chr2L_3190001 RAL-303_100b 172 chr2L 3193811 3193817 chr2L 3193922 3193928 7 111 39.5 22.5 31.0 0.2 117 chr2L 3193811 intron CG34393 - chr2L 3193870 intron CG34393 - chr2L 3193928 intron CG34393 - chr2L_7_3190001 chr2L_3190001 RAL-303_100b 173 chr2L 3193818 3193824 chr2L 3193921 3193935 8 108 35.5 21.0 28.2 0.3 117 chr2L 3193818 intron CG34393 - chr2L 3193876 intron CG34393 - chr2L 3193935 intron CG34393 - chr2L_8_3190001 chr2L_3190001 RAL-303_100b 174 chr2L 3193825 3193845 chr2L 3193920 3193956 29 110 20.0 21.0 20.5 1.3 131 chr2L 3193825 intron CG34393 - chr2L 3193890 intron CG34393 - chr2L 3193956 intron CG34393 - chr2L_29_3190001 chr2L_3190001 RAL-303_100b 175 chr2L 3193846 3193855 chr2L 3193910 3193966 13 103 17.5 15.5 16.5 0.7 120 chr2L 3193846 intron CG34393 - chr2L 3193906 intron CG34393 - chr2L 3193966 intron CG34393 - chr2L_13_3190001 chr2L_3190001 RAL-303_100b 176 chr2L 3202724 3202772 chr2L 3210173 3210226 mdg1 45 7452 15.0 6.5 10.8 3.8 7502 chr2L 3202724 intergenic not near genes chr2L 3206475 intergenic not near genes chr2L 3210226 intergenic CR45336 + chr2L_45_3205001 chr2L_3205001 RAL-303_100b 177 chr2L 3215195 3215235 chr2L 3215299 3215329 13 102 41.5 49.0 45.2 0.3 134 chr2L 3215195 intergenic not near genes chr2L 3215262 intergenic not near genes chr2L 3215329 intergenic not near genes chr2L_13_3215001 chr2L_3215001 RAL-303_100b 178 chr2L 3244071 3244083 chr2L 3244183 3244193 5 109 52.0 43.5 47.8 0.1 122 chr2L 3244071 intergenic not near genes chr2L 3244132 intergenic not near genes chr2L 3244193 intergenic not near genes chr2L_5_3240001 chr2L_3240001 RAL-303_100b 179 chr2L 3244085 3244121 chr2L 3244182 3244233 12 100 46.0 43.5 44.8 0.3 148 chr2L 3244085 intergenic not near genes chr2L 3244159 intergenic not near genes chr2L 3244233 intergenic not near genes chr2L_12_3240001 chr2L_3240001 RAL-303_100b 180 chr2L 3251470 3251527 chr2L 3259060 3259099 springer 39 7589 7.0 17.5 12.2 3.0 7629 chr2L 3251470 intergenic not near genes chr2L 3255284 intergenic not near genes chr2L 3259099 intergenic not near genes chr2L_39_3255001 chr2L_3255001 RAL-303_100b 181 chr2L 3261487 3261510 chr2L 3261604 3261627 15 116 53.5 56.5 55.0 0.3 140 chr2L 3261487 intergenic CR45338 -,CR45337 - chr2L 3261557 intergenic CR45338 -,CR45337 - chr2L 3261627 intergenic CR45338 -,CR45337 - chr2L_15_3260001 chr2L_3260001 RAL-303_100b 182 chr2L 3291211 3291270 chr2L 3291316 3291360 48 100 8.0 16.5 12.2 3.6 149 chr2L 3291211 intergenic CG9664 - chr2L 3291286 3` UTR CG9664 - chr2L 3291360 3` UTR CG9664 - chr2L_48_3290001 chr2L_3290001 RAL-303_100b 183 chr2L 3312081 3312113 chr2L 3312185 3312243 18 125 33.5 37.0 35.2 0.5 162 chr2L 3312081 intron CG3277 + chr2L 3312162 intron CG3277 + chr2L 3312243 intron CG3277 + chr2L_18_3310001 chr2L_3310001 RAL-303_100b 184 chr2L 3323233 3323263 chr2L 3323365 3323385 17 129 54.5 56.5 55.5 0.3 152 chr2L 3323233 intergenic CG8837 + chr2L 3323309 intergenic CG8837 + chr2L 3323385 intergenic CG8837 + chr2L_17_3320001 chr2L_3320001 RAL-303_100b 185 chr2L 3323267 3323281 chr2L 3323364 3323383 6 121 49.5 56.5 53.0 0.1 116 chr2L 3323267 intergenic CG8837 + chr2L 3323325 intergenic CG8837 + chr2L 3323383 intergenic CG8837 + chr2L_6_3320001 chr2L_3320001 RAL-303_100b 186 chr2L 3366554 3366562 chr2L 3366651 3366670 7 106 40.0 35.5 37.8 0.2 116 chr2L 3366554 intron CG34394 - chr2L 3366612 intron CG34394 - chr2L 3366670 intron CG34394 - chr2L_7_3365001 chr2L_3365001 RAL-303_100b 187 chr2L 3366989 3367022 chr2L 3367164 3367197 16 174 22.0 52.5 37.2 0.4 208 chr2L 3366989 intron CG34394 - chr2L 3367093 intron CG34394 - chr2L 3367197 intron CG34394 - chr2L_16_3365001 chr2L_3365001 RAL-303_100b 188 chr2L 3367023 3367041 chr2L 3367163 3367216 14 172 25.0 52.0 38.5 0.4 193 chr2L 3367023 intron CG34394 - chr2L 3367120 intron CG34394 - chr2L 3367216 intron CG34394 - chr2L_14_3365001 chr2L_3365001 RAL-303_100b 189 chr2L 3388579 3388628 chr2L 3388840 3388894 pogo 36 265 13.0 13.0 13.0 2.6 315 chr2L 3388579 intergenic CG42460 - chr2L 3388736 intergenic CG42460 - chr2L 3388894 intergenic CG42460 -,CR44791 + chr2L_36_3385001 chr2L_3385001 RAL-303_100b 190 chr2L 3396568 3396622 chr2L 3396790 3396844 34 219 16.5 40.0 28.2 1.2 276 chr2L 3396568 intergenic not near genes chr2L 3396706 intergenic not near genes chr2L 3396844 intergenic CR44792 - chr2L_34_3395001 chr2L_3395001 RAL-303_100b 191 chr2L 3401847 3401860 chr2L 3401959 3401977 8 115 58.5 41.5 50.0 0.2 130 chr2L 3401847 intergenic not near genes chr2L 3401912 intergenic not near genes chr2L 3401977 intergenic not near genes chr2L_8_3400001 chr2L_3400001 RAL-303_100b 192 chr2L 3401861 3401896 chr2L 3401955 3402013 20 113 46.5 39.0 42.8 0.5 152 chr2L 3401861 intergenic not near genes chr2L 3401937 intergenic not near genes chr2L 3402013 intergenic not near genes chr2L_20_3400001 chr2L_3400001 RAL-303_100b 193 chr2L 3444091 3444107 chr2L 3444195 3444211 5 104 50.5 71.0 60.8 0.1 120 chr2L 3444091 intergenic not near genes chr2L 3444151 intergenic not near genes chr2L 3444211 intergenic not near genes chr2L_5_3440001 chr2L_3440001 RAL-303_100b 194 chr2L 3497814 3497871 chr2L 3497916 3497974 22 100 40.5 42.0 41.2 0.5 160 chr2L 3497814 intron tim - chr2L 3497894 intron tim - chr2L 3497974 intron tim - chr2L_22_3495001 chr2L_3495001 RAL-303_100b 195 chr2L 3508323 3508376 chr2L 3508426 3508479 34 102 11.5 14.5 13.0 2.4 156 chr2L 3508323 intergenic tim -,CR45299 + chr2L 3508401 intergenic CR45299 +,tim - chr2L 3508479 intergenic CR45299 +,tim - chr2L_34_3505001 chr2L_3505001 RAL-303_100b 196 chr2L 3540428 3540458 chr2L 3540539 3540564 12 111 33.0 28.0 30.5 0.4 136 chr2L 3540428 intron drm + chr2L 3540496 intron drm + chr2L 3540564 intron drm + chr2L_12_3540001 chr2L_3540001 RAL-303_100b 197 chr2L 3548563 3548612 chr2L 3548667 3548716 27 102 49.0 53.0 51.0 0.5 153 chr2L 3548563 intergenic drm + chr2L 3548640 intergenic drm + chr2L 3548716 intergenic drm + chr2L_27_3545001 chr2L_3545001 RAL-303_100b 198 chr2L 3556933 3557036 chr2L 3557034 3557129 27 102 28.0 26.5 27.2 1.0 196 chr2L 3556933 intergenic not near genes chr2L 3557031 intergenic not near genes chr2L 3557129 intergenic not near genes chr2L_27_3555001 chr2L_3555001 RAL-303_100b 199 chr2L 3584644 3584704 chr2L 3584746 3584806 17 95 58.0 39.0 48.5 0.3 162 chr2L 3584644 intergenic not near genes chr2L 3584725 intergenic not near genes chr2L 3584806 intergenic not near genes chr2L_17_3580001 chr2L_3580001 RAL-303_100b 200 chr2L 3587027 3587068 chr2L 3587120 3587169 17 98 46.5 51.0 48.8 0.3 142 chr2L 3587027 intergenic not near genes chr2L 3587098 intergenic not near genes chr2L 3587169 intergenic not near genes chr2L_17_3585001 chr2L_3585001 RAL-303_100b 201 chr2L 3590151 3590197 chr2L 3590257 3590303 20 104 46.0 40.0 43.0 0.5 152 chr2L 3590151 3` UTR CR43823 - chr2L 3590227 3` UTR CR43823 - chr2L 3590303 intergenic CR43823 - chr2L_20_3590001 chr2L_3590001 RAL-303_100b 202 chr2L 3611406 3611424 chr2L 3611510 3611518 8 103 37.5 29.5 33.5 0.2 112 chr2L 3611406 intergenic not near genes chr2L 3611462 intergenic not near genes chr2L 3611518 intergenic not near genes chr2L_8_3610001 chr2L_3610001 RAL-303_100b 203 chr2L 3634083 3634131 chr2L 3634190 3634238 32 105 47.0 47.5 47.2 0.7 155 chr2L 3634083 intron for - chr2L 3634160 intron for - chr2L 3634238 exon for - chr2L_32_3630001 chr2L_3630001 RAL-303_100b 204 chr2L 3646791 3646839 chr2L 3646893 3646946 25 104 29.0 44.5 36.8 0.7 155 chr2L 3646791 intron for - chr2L 3646868 intron for - chr2L 3646946 intron for - chr2L_25_3645001 chr2L_3645001 RAL-303_100b 205 chr2L 3649758 3649798 chr2L 3654990 3655025 copia 21 5226 0.5 15.5 8.0 2.3 5267 chr2L 3649758 intron for - chr2L 3652392 intron for - chr2L 3655025 intron for - chr2L_21_3650001 chr2L_3650001 RAL-303_100b 206 chr2L 3649800 3649805 chr2L 3654988 3655032 copia 5 5218 0.5 15.0 7.8 0.6 5232 chr2L 3649800 intron for - chr2L 3652416 intron for - chr2L 3655032 intron for - chr2L_5_3650001 chr2L_3650001 RAL-303_100b 207 chr2L 3668050 3668065 chr2L 3668141 3668166 11 99 28.0 44.5 36.2 0.3 116 chr2L 3668050 intron,3` UTR CG34340 +,Sfp24Ba - chr2L 3668108 intron,3` UTR CG34340 +,Sfp24Ba - chr2L 3668166 intron,exon CG34340 +,Sfp24Ba - chr2L_11_3665001 chr2L_3665001 RAL-303_100b 208 chr2L 3686026 3686054 chr2L 3686137 3686167 11 113 35.5 36.5 36.0 0.3 141 chr2L 3686026 intron CG34340 + chr2L 3686096 intron CG34340 + chr2L 3686167 intron CG34340 + chr2L_11_3685001 chr2L_3685001 RAL-303_100b 209 chr2L 3702876 3702930 chr2L 3702987 3703028 30 108 38.5 43.0 40.8 0.7 152 chr2L 3702876 5` UTR CR44311 + chr2L 3702952 intergenic CR44311 + chr2L 3703028 intergenic CR44311 + chr2L_30_3700001 chr2L_3700001 RAL-303_100b 210 chr2L 3729148 3729197 chr2L 3729271 3729320 18 122 14.5 32.0 23.2 0.7 172 chr2L 3729148 intergenic Shaw + chr2L 3729234 intergenic Shaw + chr2L 3729320 intergenic Shaw + chr2L_18_3725001 chr2L_3725001 RAL-303_100b 211 chr2L 3753942 3753994 chr2L 3754044 3754070 20 96 37.0 35.5 36.2 0.5 128 chr2L 3753942 intergenic not near genes chr2L 3754006 intergenic not near genes chr2L 3754070 intergenic not near genes chr2L_20_3750001 chr2L_3750001 RAL-303_100b 212 chr2L 3768568 3768577 chr2L 3768675 3768683 7 107 16.0 29.0 22.5 0.3 115 chr2L 3768568 3` UTR CG43707 + chr2L 3768626 3` UTR CG43707 + chr2L 3768683 3` UTR CG43707 + chr2L_7_3765001 chr2L_3765001 RAL-303_100b 213 chr2L 3788384 3788395 chr2L 3788504 3788515 4 120 26.5 33.5 30.0 0.1 131 chr2L 3788384 intron CG3921 + chr2L 3788450 intron CG3921 + chr2L 3788515 intron CG3921 + chr2L_4_3785001 chr2L_3785001 RAL-303_100b 214 chr2L 3792462 3792496 chr2L 3792579 3792607 8 116 37.0 44.0 40.5 0.2 145 chr2L 3792462 intron CG3921 + chr2L 3792534 intron CG3921 + chr2L 3792607 exon CG3921 + chr2L_8_3790001 chr2L_3790001 RAL-303_100b 215 chr2L 3819006 3819053 chr2L 3819113 3819160 20 105 56.5 47.0 51.8 0.4 154 chr2L 3819006 intergenic CR44077 + chr2L 3819083 intergenic not near genes chr2L 3819160 intergenic not near genes chr2L_20_3815001 chr2L_3815001 RAL-303_100b 216 chr2L 3820113 3820165 chr2L 3820227 3820274 26 111 36.0 44.5 40.2 0.6 161 chr2L 3820113 intergenic not near genes chr2L 3820194 intergenic not near genes chr2L 3820274 intergenic not near genes chr2L_26_3820001 chr2L_3820001 RAL-303_100b 217 chr2L 3820416 3820468 chr2L 3820544 3820581 23 123 51.0 45.5 48.2 0.5 165 chr2L 3820416 intergenic not near genes chr2L 3820498 intergenic not near genes chr2L 3820581 intergenic not near genes chr2L_23_3820001 chr2L_3820001 RAL-303_100b 218 chr2L 3821046 3821059 chr2L 3821147 3821160 5 101 34.0 25.0 29.5 0.2 114 chr2L 3821046 intergenic not near genes chr2L 3821103 intergenic not near genes chr2L 3821160 intergenic not near genes chr2L_5_3820001 chr2L_3820001 RAL-303_100b 219 chr2L 3831824 3831863 chr2L 3831930 3831969 18 106 51.5 52.0 51.8 0.3 145 chr2L 3831824 intergenic not near genes chr2L 3831896 intergenic not near genes chr2L 3831969 intergenic not near genes chr2L_18_3830001 chr2L_3830001 RAL-303_100b 220 chr2L 3846444 3846499 chr2L 3846545 3846588 25 93 39.0 38.0 38.5 0.6 144 chr2L 3846444 intergenic not near genes chr2L 3846516 intergenic not near genes chr2L 3846588 intergenic not near genes chr2L_25_3845001 chr2L_3845001 RAL-303_100b 221 chr2L 3876231 3876275 chr2L 3876334 3876378 24 102 45.0 55.0 50.0 0.5 147 chr2L 3876231 intron capu - chr2L 3876304 intron capu - chr2L 3876378 intron capu - chr2L_24_3875001 chr2L_3875001 RAL-303_100b 222 chr2L 3884767 3884810 chr2L 3884869 3884912 19 100 35.5 31.0 33.2 0.6 145 chr2L 3884767 intron capu - chr2L 3884840 intron capu - chr2L 3884912 intron capu - chr2L_19_3880001 chr2L_3880001 RAL-303_100b 223 chr2L 3891867 3891927 chr2L 3891977 3892012 46 106 11.5 12.5 12.0 3.5 145 chr2L 3891867 intron capu - chr2L 3891940 intron capu - chr2L 3892012 intron capu - chr2L_46_3890001 chr2L_3890001 RAL-303_100b 224 chr2L 3898247 3898304 chr2L 3898357 3898407 14 107 11.5 29.5 20.5 0.7 160 chr2L 3898247 intron capu - chr2L 3898327 intron capu - chr2L 3898407 intron capu - chr2L_14_3895001 chr2L_3895001 RAL-303_100b 225 chr2L 3936630 3936652 chr2L 3936735 3936757 20 104 1.5 17.0 9.2 2.0 127 chr2L 3936630 intron fred - chr2L 3936694 intron fred - chr2L 3936757 intron fred - chr2L_20_3935001 chr2L_3935001 RAL-303_100b 226 chr2L 3943770 3943822 chr2L 3943886 3943938 29 115 40.5 37.5 39.0 0.7 168 chr2L 3943770 intron fred - chr2L 3943854 intron fred - chr2L 3943938 intron fred - chr2L_29_3940001 chr2L_3940001 RAL-303_100b 227 chr2L 3959150 3959205 chr2L 3959251 3959306 31 99 34.5 33.0 33.8 0.9 156 chr2L 3959150 intron fred - chr2L 3959228 intron fred - chr2L 3959306 intron fred - chr2L_31_3955001 chr2L_3955001 RAL-303_100b 228 chr2L 3960542 3960559 chr2L 3960737 3960747 9 194 79.0 27.0 53.0 0.2 205 chr2L 3960542 intron fred - chr2L 3960644 intron fred - chr2L 3960747 intron fred - chr2L_9_3960001 chr2L_3960001 RAL-303_100b 229 chr2L 3960560 3960594 chr2L 3960735 3960789 29 191 50.5 26.5 38.5 0.7 229 chr2L 3960560 intron fred - chr2L 3960674 intron fred - chr2L 3960789 intron fred - chr2L_29_3960001 chr2L_3960001 RAL-303_100b 230 chr2L 3962111 3962122 chr2L 3962216 3962227 6 103 30.5 31.5 31.0 0.2 116 chr2L 3962111 intron fred - chr2L 3962169 intron fred - chr2L 3962227 intron fred - chr2L_6_3960001 chr2L_3960001 RAL-303_100b 231 chr2L 3963546 3963565 chr2L 3963647 3963664 11 100 43.0 41.0 42.0 0.3 118 chr2L 3963546 intron fred - chr2L 3963605 intron fred - chr2L 3963664 intron fred - chr2L_11_3960001 chr2L_3960001 RAL-303_100b 232 chr2L 3982613 3982648 chr2L 3982726 3982761 9 111 29.0 38.0 33.5 0.3 148 chr2L 3982613 intron fred - chr2L 3982687 intron fred - chr2L 3982761 intron fred - chr2L_9_3980001 chr2L_3980001 RAL-303_100b 233 chr2L 4037777 4037805 chr2L 4037889 4037917 34 110 17.5 16.0 16.8 1.9 140 chr2L 4037777 intron ed + chr2L 4037847 intron ed + chr2L 4037917 intron ed + chr2L_34_4035001 chr2L_4035001 RAL-303_100b 234 chr2L 4038483 4038487 chr2L 4039366 4039370 4 883 38.5 27.5 33.0 0.1 887 chr2L 4038483 intron ed + chr2L 4038926 intron ed + chr2L 4039370 intron ed + chr2L_4_4035001 chr2L_4035001 RAL-303_100b 235 chr2L 4038493 4038525 chr2L 4039359 4039408 14 880 25.0 27.0 26.0 0.5 915 chr2L 4038493 intron ed + chr2L 4038950 intron ed + chr2L 4039408 intron ed + chr2L_14_4035001 chr2L_4035001 RAL-303_100b 236 chr2L 4060160 4060196 chr2L 4060261 4060297 15 100 37.5 37.0 37.2 0.4 137 chr2L 4060160 intron ed + chr2L 4060228 intron ed + chr2L 4060297 intron ed + chr2L_15_4060001 chr2L_4060001 RAL-303_100b 237 chr2L 4066018 4066056 chr2L 4068868 4068906 Juan 30 2848 17.0 24.0 20.5 1.4 2888 chr2L 4066018 intron ed + chr2L 4067462 intron ed + chr2L 4068906 intron ed + chr2L_30_4065001 chr2L_4065001 RAL-303_100b 238 chr2L 4082863 4082915 chr2L 4082992 4083033 28 125 48.5 43.5 46.0 0.6 170 chr2L 4082863 intron ed + chr2L 4082948 intron ed + chr2L 4083033 intron ed + chr2L_28_4080001 chr2L_4080001 RAL-303_100b 239 chr2L 4083416 4083441 chr2L 4083625 4083629 4 205 32.0 11.5 21.8 0.2 213 chr2L 4083416 intron ed + chr2L 4083522 intron ed + chr2L 4083629 intron ed + chr2L_4_4080001 chr2L_4080001 RAL-303_100b 240 chr2L 4150601 4150610 chr2L 4150706 4150715 4 104 41.5 43.0 42.2 0.1 114 chr2L 4150601 exon CG2955 + chr2L 4150658 exon CG2955 + chr2L 4150715 exon CG2955 + chr2L_4_4150001 chr2L_4150001 RAL-303_100b 241 chr2L 4150614 4150656 chr2L 4150702 4150761 17 102 35.5 41.5 38.5 0.4 147 chr2L 4150614 exon CG2955 + chr2L 4150688 exon CG2955 + chr2L 4150761 exon CG2955 + chr2L_17_4150001 chr2L_4150001 RAL-303_100b 242 chr2L 4155606 4155631 chr2L 4155855 4155885 7 262 43.0 29.5 36.2 0.2 279 chr2L 4155606 intergenic not near genes chr2L 4155746 intergenic not near genes chr2L 4155885 intergenic not near genes chr2L_7_4155001 chr2L_4155001 RAL-303_100b 243 chr2L 4159435 4159487 chr2L 4159545 4159567 25 106 42.0 44.5 43.2 0.6 132 chr2L 4159435 intergenic not near genes chr2L 4159501 intergenic not near genes chr2L 4159567 intergenic not near genes chr2L_25_4155001 chr2L_4155001 RAL-303_100b 244 chr2L 4166350 4166410 chr2L 4166458 4166518 67 106 12.0 17.5 14.8 4.2 168 chr2L 4166350 intergenic Or24a - chr2L 4166434 intergenic Or24a - chr2L 4166518 intergenic Or24a - chr2L_67_4165001 chr2L_4165001 RAL-303_100b 245 chr2L 4180104 4180121 chr2L 4180205 4180222 10 100 47.0 42.5 44.8 0.2 118 chr2L 4180104 intergenic not near genes chr2L 4180163 intergenic not near genes chr2L 4180222 intergenic not near genes chr2L_10_4180001 chr2L_4180001 RAL-303_100b 246 chr2L 4184448 4184509 chr2L 4184792 4184853 19 342 31.0 42.5 36.8 0.5 405 chr2L 4184448 intergenic not near genes chr2L 4184650 intergenic not near genes chr2L 4184853 intergenic not near genes chr2L_19_4180001 chr2L_4180001 RAL-303_100b 247 chr2L 4218266 4218285 chr2L 4218376 4218395 13 109 49.0 24.0 36.5 0.3 129 chr2L 4218266 intron ft - chr2L 4218330 intron ft - chr2L 4218395 intron ft - chr2L_13_4215001 chr2L_4215001 RAL-303_100b 248 chr2L 4222085 4222107 chr2L 4222200 4222222 11 115 41.0 42.5 41.8 0.3 137 chr2L 4222085 intergenic ft - chr2L 4222154 intergenic ft - chr2L 4222222 intergenic ft - chr2L_11_4220001 chr2L_4220001 RAL-303_100b 249 chr2L 4265475 4265523 chr2L 4265581 4265634 16 108 21.0 18.0 19.5 0.8 159 chr2L 4265475 intergenic not near genes chr2L 4265554 intergenic not near genes chr2L 4265634 intergenic not near genes chr2L_16_4265001 chr2L_4265001 RAL-303_100b 250 chr2L 4289808 4289850 chr2L 4290123 4290167 8 314 37.5 24.5 31.0 0.2 359 chr2L 4289808 intron tutl + chr2L 4289988 intron tutl + chr2L 4290167 intron tutl + chr2L_8_4285001 chr2L_4285001 RAL-303_100b 251 chr2L 4293969 4294010 chr2L 4294086 4294127 10 115 46.0 38.0 42.0 0.2 158 chr2L 4293969 intron tutl + chr2L 4294048 intron tutl + chr2L 4294127 intron tutl + chr2L_10_4290001 chr2L_4290001 RAL-303_100b 252 chr2L 4309770 4309819 chr2L 4309874 4309913 30 107 41.5 47.0 44.2 0.7 143 chr2L 4309770 intron tutl + chr2L 4309842 intron tutl + chr2L 4309913 intron tutl + chr2L_30_4305001 chr2L_4305001 RAL-303_100b 253 chr2L 4345471 4345518 chr2L 4345574 4345581 19 99 39.5 43.5 41.5 0.4 110 chr2L 4345471 3` UTR Atet + chr2L 4345526 3` UTR Atet + chr2L 4345581 3` UTR Atet + chr2L_19_4345001 chr2L_4345001 RAL-303_100b 254 chr2L 4351447 4351502 chr2L 4351548 4351603 29 97 54.5 47.5 51.0 0.6 156 chr2L 4351447 5` UTR CR44700 + chr2L 4351525 intergenic CR44700 + chr2L 4351603 intergenic CR44700 + chr2L_29_4350001 chr2L_4350001 RAL-303_100b 255 chr2L 4409893 4409947 chr2L 4410228 4410282 35 332 45.0 16.0 30.5 1.1 389 chr2L 4409893 intron CG15431 - chr2L 4410088 intron CG15431 - chr2L 4410282 intron CG15431 - chr2L_35_4410001 chr2L_4410001 RAL-303_100b 256 chr2L 4438595 4438610 chr2L 4439054 4439069 7 458 11.0 47.0 29.0 0.2 474 chr2L 4438595 intron CG15431 - chr2L 4438832 intron CG15431 - chr2L 4439069 intron CG15431 - chr2L_7_4435001 chr2L_4435001 RAL-303_100b 257 chr2L 4438611 4438619 chr2L 4439045 4439078 4 453 15.0 46.5 30.8 0.1 467 chr2L 4438611 intron CG15431 - chr2L 4438844 intron CG15431 - chr2L 4439078 intron CG15431 - chr2L_4_4435001 chr2L_4435001 RAL-303_100b 258 chr2L 4582719 4582778 chr2L 4582837 4582895 26 112 43.5 49.5 46.5 0.5 176 chr2L 4582719 intron,3` UTR dp -,CR43716 - chr2L 4582807 intron,intron dp -,CR43716 - chr2L 4582895 intron,3` UTR dp -,CR43716 - chr2L_26_4580001 chr2L_4580001 RAL-303_100b 259 chr2L 4601679 4601735 chr2L 4609145 4609201 mdg1 58 7464 14.0 11.0 12.5 4.3 7522 chr2L 4601679 intron dp - chr2L 4605440 intron dp - chr2L 4609201 intron dp - chr2L_58_4605001 chr2L_4605001 RAL-303_100b 260 chr2L 4656515 4656573 chr2L 4656618 4656676 32 100 23.0 27.0 25.0 1.2 161 chr2L 4656515 intergenic not near genes chr2L 4656596 intergenic not near genes chr2L 4656676 intergenic not near genes chr2L_32_4655001 chr2L_4655001 RAL-303_100b 261 chr2L 4661455 4661507 chr2L 4661560 4661588 15 100 31.0 34.0 32.5 0.4 133 chr2L 4661455 intergenic not near genes chr2L 4661522 intergenic not near genes chr2L 4661588 intergenic not near genes chr2L_15_4660001 chr2L_4660001 RAL-303_100b 262 chr2L 4661818 4661838 chr2L 4669423 4669443 opus 14 7605 20.5 37.0 28.8 0.5 7625 chr2L 4661818 intergenic not near genes chr2L 4665630 intergenic not near genes chr2L 4669443 intergenic not near genes chr2L_14_4665001 chr2L_4665001 RAL-303_100b 263 chr2L 4661840 4661855 chr2L 4669439 4669460 opus 14 7604 13.0 44.5 28.8 0.5 7620 chr2L 4661840 intergenic not near genes chr2L 4665650 intergenic not near genes chr2L 4669460 intergenic not near genes chr2L_14_4665001 chr2L_4665001 RAL-303_100b 264 chr2L 4718741 4718793 chr2L 4718885 4718937 32 143 52.5 48.5 50.5 0.6 196 chr2L 4718741 intron CG34351 + chr2L 4718839 intron CG34351 + chr2L 4718937 intron CG34351 + chr2L_32_4715001 chr2L_4715001 RAL-303_100b 265 chr2L 4791939 4791967 chr2L 4792393 4792417 11 452 32.0 37.0 34.5 0.3 478 chr2L 4791939 intron CG15630 - chr2L 4792178 intron CG15630 - chr2L 4792417 intron CG15630 - chr2L_11_4790001 chr2L_4790001 RAL-303_100b 266 chr2L 4791969 4791986 chr2L 4792392 4792440 11 446 34.5 37.0 35.8 0.3 471 chr2L 4791969 intron CG15630 - chr2L 4792204 intron CG15630 - chr2L 4792440 intron CG15630 - chr2L_11_4790001 chr2L_4790001 RAL-303_100b 267 chr2L 4793283 4793321 chr2L 4793603 4793638 9 319 24.0 9.5 16.8 0.5 355 chr2L 4793283 intron CG15630 - chr2L 4793460 intron CG15630 - chr2L 4793638 exon CG15630 - chr2L_9_4790001 chr2L_4790001 RAL-303_100b 268 chr2L 4803855 4803915 chr2L 4803964 4804024 31 108 28.5 36.0 32.2 0.9 169 chr2L 4803855 intergenic not near genes chr2L 4803940 intergenic not near genes chr2L 4804024 intergenic not near genes chr2L_31_4800001 chr2L_4800001 RAL-303_100b 269 chr2L 4819468 4819519 chr2L 4819616 4819662 38 142 6.5 16.0 11.2 3.1 194 chr2L 4819468 intergenic not near genes chr2L 4819565 intergenic not near genes chr2L 4819662 intergenic not near genes chr2L_38_4815001 chr2L_4815001 RAL-303_100b 270 chr2L 4841046 4841104 chr2L 4841147 4841205 57 96 16.5 16.5 16.5 3.3 159 chr2L 4841046 intron CG12194 + chr2L 4841126 intron CG12194 + chr2L 4841205 3` UTR CG12194 + chr2L_57_4840001 chr2L_4840001 RAL-303_100b 271 chr2L 4853699 4853722 chr2L 4853953 4853966 12 251 51.5 36.5 44.0 0.3 267 chr2L 4853699 intron pog + chr2L 4853832 intron pog + chr2L 4853966 intron pog + chr2L_12_4850001 chr2L_4850001 RAL-303_100b 272 chr2L 4853726 4853750 chr2L 4853950 4853999 11 249 28.5 36.5 32.5 0.3 273 chr2L 4853726 intron pog + chr2L 4853862 intron pog + chr2L 4853999 intron pog + chr2L_11_4850001 chr2L_4850001 RAL-303_100b 273 chr2L 4918141 4918204 chr2L 4923239 4923340 jockey 45 5109 10.5 8.5 9.5 4.3 5199 chr2L 4918141 intron hoe1 - chr2L 4920740 intron hoe1 - chr2L 4923340 intron hoe1 - chr2L_45_4920001 chr2L_4920001 RAL-303_100b 274 chr2L 4923235 4923248 chr2L 4923351 4923354 7 115 15.0 49.5 32.2 0.2 119 chr2L 4923235 intron hoe1 - chr2L 4923294 intron hoe1 - chr2L 4923354 intron hoe1 - chr2L_7_4920001 chr2L_4920001 RAL-303_100b 275 chr2L 4925652 4925696 chr2L 4925756 4925796 8 101 48.0 48.5 48.2 0.2 144 chr2L 4925652 intron hoe1 - chr2L 4925724 intron hoe1 - chr2L 4925796 intron hoe1 - chr2L_8_4925001 chr2L_4925001 RAL-303_100b 276 chr2L 4953504 4953519 chr2L 4953770 4953770 pogo 9 264 22.5 0.0 11.2 0.7 266 chr2L 4953504 intergenic Jon25Bii - chr2L 4953637 intergenic not near genes chr2L 4953770 intergenic not near genes chr2L_9_4950001 chr2L_4950001 RAL-303_100b 277 chr2L 5027954 5027959 chr2L 5028057 5028068 5 107 7.0 22.0 14.5 0.3 114 chr2L 5027954 intron vkg - chr2L 5028011 intron vkg - chr2L 5028068 intron vkg - chr2L_5_5025001 chr2L_5025001 RAL-303_100b 278 chr2L 5027960 5027991 chr2L 5028050 5028100 30 108 7.0 17.5 12.2 2.3 140 chr2L 5027960 intron vkg - chr2L 5028030 intron vkg - chr2L 5028100 intron vkg - chr2L_30_5025001 chr2L_5025001 RAL-303_100b 279 chr2L 5092388 5092443 chr2L 5092498 5092555 12 111 23.5 26.5 25.0 0.5 167 chr2L 5092388 intron pgant5 - chr2L 5092472 intron pgant5 - chr2L 5092555 intron pgant5 - chr2L_12_5090001 chr2L_5090001 RAL-303_100b 280 chr2L 5099215 5099270 chr2L 5099336 5099391 24 120 34.5 41.5 38.0 0.6 176 chr2L 5099215 3` UTR,3` UTR CG4230 +,CG8680 - chr2L 5099303 3` UTR CG8680 - chr2L 5099391 3` UTR CG8680 - chr2L_24_5095001 chr2L_5095001 RAL-303_100b 281 chr2L 5207267 5207328 chr2L 5209307 5209358 21 2036 150.0 114.5 132.2 0.2 2091 chr2L 5207267 5` UTR Cyp28d2 + chr2L 5208312 exon Cyp28d2 + chr2L 5209358 intergenic Cyp28d2 + chr2L_21_5205001 chr2L_5205001 RAL-303_100b 282 chr2L 5206803 5206860 chr2L 5209723 5209780 74 2921 91.0 142.5 116.8 0.6 2977 chr2L 5206803 3` UTR Msp300 + chr2L 5208292 exon Cyp28d2 + chr2L 5209780 intergenic Cyp28d2 + chr2L_74_5205001 chr2L_5205001 RAL-303_100b 283 chr2L 5242935 5242937 chr2L 16217660 16217660 6 10974724 89.0 70.0 79.5 0.1 10974725 chr2L 5242935 intron tkv - chr2L 10730298 3` UTR,5` UTR CG6443 +,CG17118 + chr2L 16217660 intergenic not near genes chr2L_6_10730001 chr2L_10730001 RAL-303_100b 284 chr2L 5262502 5262545 chr2L 5262604 5262647 21 97 36.0 30.0 33.0 0.6 145 chr2L 5262502 intron tkv - chr2L 5262574 intron tkv - chr2L 5262647 intron tkv - chr2L_21_5260001 chr2L_5260001 RAL-303_100b 285 chr2L 5265648 5265760 chr2L 5270060 5270187 6 4415 63.0 68.5 65.8 0.1 4539 chr2L 5265648 intron,exon tkv -,Cyp4ac1 + chr2L 5267918 intron,exon tkv -,Cyp4ac2 + chr2L 5270187 intron,exon tkv -,Cyp4ac3 + chr2L_6_5265001 chr2L_5265001 RAL-303_100b 286 chr2L 5276696 5276733 chr2L 5276805 5276842 27 108 21.5 22.5 22.0 1.2 146 chr2L 5276696 exon Bsg25D - chr2L 5276769 intron Bsg25D - chr2L 5276842 intron Bsg25D - chr2L_27_5275001 chr2L_5275001 RAL-303_100b 287 chr2L 5284373 5284386 chr2L 5284484 5284497 5 111 54.5 29.5 42.0 0.1 124 chr2L 5284373 intergenic not near genes chr2L 5284435 intergenic not near genes chr2L 5284497 intergenic not near genes chr2L_5_5280001 chr2L_5280001 RAL-303_100b 288 chr2L 5284388 5284411 chr2L 5284473 5284522 8 105 39.0 29.5 34.2 0.2 134 chr2L 5284388 intergenic not near genes chr2L 5284455 intergenic not near genes chr2L 5284522 intergenic not near genes chr2L_8_5280001 chr2L_5280001 RAL-303_100b 289 chr2L 5342747 5342797 chr2L 5345152 5345202 Doc 51 2404 9.5 17.0 13.2 3.6 2455 chr2L 5342747 intergenic not near genes chr2L 5343974 intergenic not near genes chr2L 5345202 intergenic not near genes chr2L_51_5340001 chr2L_5340001 RAL-303_100b 290 chr2L 5380216 5380240 chr2L 5380336 5380347 8 118 64.0 62.5 63.2 0.1 131 chr2L 5380216 3` UTR CR42850 - chr2L 5380282 3` UTR CR42850 - chr2L 5380347 intron CR42850 - chr2L_8_5380001 chr2L_5380001 RAL-303_100b 291 chr2L 5448010 5448019 chr2L 5448119 5448128 4 109 31.5 39.5 35.5 0.1 118 chr2L 5448010 intergenic not near genes chr2L 5448069 intergenic not near genes chr2L 5448128 intergenic not near genes chr2L_4_5445001 chr2L_5445001 RAL-303_100b 292 chr2L 5448020 5448029 chr2L 5448109 5448131 5 102 32.0 38.5 35.2 0.1 111 chr2L 5448020 intergenic not near genes chr2L 5448076 intergenic not near genes chr2L 5448131 intergenic not near genes chr2L_5_5445001 chr2L_5445001 RAL-303_100b 293 chr2L 5449679 5449695 chr2L 5449804 5449820 7 124 14.5 0.5 7.5 0.8 141 chr2L 5449679 intergenic not near genes chr2L 5449750 intergenic not near genes chr2L 5449820 intergenic not near genes chr2L_7_5445001 chr2L_5445001 RAL-303_100b 294 chr2L 5475134 5475164 chr2L 5475264 5475294 13 130 32.0 36.5 34.2 0.4 160 chr2L 5475134 intergenic not near genes chr2L 5475214 intergenic not near genes chr2L 5475294 intergenic not near genes chr2L_13_5475001 chr2L_5475001 RAL-303_100b 295 chr2L 5500011 5500076 chr2L 5500122 5500182 25 110 44.5 38.5 41.5 0.6 171 chr2L 5500011 intergenic not near genes chr2L 5500096 intergenic not near genes chr2L 5500182 intergenic not near genes chr2L_25_5500001 chr2L_5500001 RAL-303_100b 296 chr2L 5511301 5511356 chr2L 5511409 5511449 22 107 38.0 39.5 38.8 0.6 148 chr2L 5511301 intergenic not near genes chr2L 5511375 intergenic not near genes chr2L 5511449 intergenic not near genes chr2L_22_5510001 chr2L_5510001 RAL-303_100b 297 chr2L 5516632 5516681 chr2L 5516736 5516784 18 103 32.5 34.0 33.2 0.5 152 chr2L 5516632 intergenic not near genes chr2L 5516708 intergenic not near genes chr2L 5516784 intergenic not near genes chr2L_18_5515001 chr2L_5515001 RAL-303_100b 298 chr2L 5550096 5550108 chr2L 5550195 5550206 6 103 13.5 0.0 6.8 0.8 110 chr2L 5550096 exon CG14014 - chr2L 5550151 exon CG14014 - chr2L 5550206 exon CG14014 - chr2L_6_5550001 chr2L_5550001 RAL-303_100b 299 chr2L 5550111 5550136 chr2L 5550194 5550195 4 80 9.0 0.0 4.5 0.7 84 chr2L 5550111 exon CG14014 - chr2L 5550153 exon CG14014 - chr2L 5550195 exon CG14014 - chr2L_4_5550001 chr2L_5550001 RAL-303_100b 300 chr2L 5647517 5647547 chr2L 5647648 5647677 17 129 10.0 13.5 11.8 1.3 160 chr2L 5647517 intron CG31646 - chr2L 5647597 intron CG31646 - chr2L 5647677 intron CG31646 - chr2L_17_5645001 chr2L_5645001 RAL-303_100b 301 chr2L 5666268 5666325 chr2L 5666381 5666440 7 113 39.5 46.5 43.0 0.2 172 chr2L 5666268 intron Hsp60C + chr2L 5666354 intron Hsp60C + chr2L 5666440 intron Hsp60C + chr2L_7_5665001 chr2L_5665001 RAL-303_100b 302 chr2L 5676953 5677012 chr2L 5677061 5677120 33 106 46.0 45.5 45.8 0.7 167 chr2L 5676953 intergenic not near genes chr2L 5677036 intergenic not near genes chr2L 5677120 intergenic not near genes chr2L_33_5675001 chr2L_5675001 RAL-303_100b 303 chr2L 5685403 5685415 chr2L 5685506 5685518 8 100 55.0 48.5 51.8 0.2 115 chr2L 5685403 intergenic not near genes chr2L 5685460 intergenic not near genes chr2L 5685518 intergenic not near genes chr2L_8_5685001 chr2L_5685001 RAL-303_100b 304 chr2L 5685416 5685440 chr2L 5685503 5685527 9 88 45.0 49.5 47.2 0.2 111 chr2L 5685416 intergenic not near genes chr2L 5685472 intergenic not near genes chr2L 5685527 intergenic not near genes chr2L_9_5685001 chr2L_5685001 RAL-303_100b 305 chr2L 5686436 5686445 chr2L 5686543 5686552 5 107 47.5 54.5 51.0 0.1 116 chr2L 5686436 intergenic not near genes chr2L 5686494 intergenic not near genes chr2L 5686552 intergenic not near genes chr2L_5_5685001 chr2L_5685001 RAL-303_100b 306 chr2L 5691805 5691859 chr2L 5691932 5691986 14 125 25.5 20.5 23.0 0.6 181 chr2L 5691805 intergenic CR44819 +,CR44820 - chr2L 5691896 intergenic CR44819 +,CR44820 - chr2L 5691986 intergenic CR44819 + chr2L_14_5690001 chr2L_5690001 RAL-303_100b 307 chr2L 5695835 5695891 chr2L 5695952 5696008 55 115 8.0 15.0 11.5 4.4 173 chr2L 5695835 intergenic not near genes chr2L 5695922 intergenic not near genes chr2L 5696008 intergenic not near genes chr2L_55_5695001 chr2L_5695001 RAL-303_100b 308 chr2L 5805741 5805753 chr2L 5806220 5806227 8 478 63.0 32.0 47.5 0.2 486 chr2L 5805741 intron CG11034 + chr2L 5805984 intron CG11034 + chr2L 5806227 intron CG11034 + chr2L_8_5805001 chr2L_5805001 RAL-303_100b 309 chr2L 5805755 5805791 chr2L 5806219 5806270 25 476 46.0 32.0 39.0 0.6 515 chr2L 5805755 intron CG11034 + chr2L 5806012 intron CG11034 + chr2L 5806270 intron CG11034 + chr2L_25_5805001 chr2L_5805001 RAL-303_100b 310 chr2L 5806024 5806077 chr2L 5806130 5806183 30 105 5.5 7.0 6.2 4.2 159 chr2L 5806024 intron CG11034 + chr2L 5806104 intron CG11034 + chr2L 5806183 intron CG11034 + chr2L_30_5805001 chr2L_5805001 RAL-303_100b 311 chr2L 5815042 5815086 chr2L 5815144 5815171 23 98 35.0 20.0 27.5 0.8 129 chr2L 5815042 intergenic not near genes chr2L 5815106 intergenic not near genes chr2L 5815171 intergenic not near genes chr2L_23_5815001 chr2L_5815001 RAL-303_100b 312 chr2L 5816155 5816217 chr2L 5816256 5816318 23 97 49.0 48.0 48.5 0.5 163 chr2L 5816155 intergenic not near genes chr2L 5816236 intergenic not near genes chr2L 5816318 intergenic not near genes chr2L_23_5815001 chr2L_5815001 RAL-303_100b 313 chr2L 5826027 5826083 chr2L 5826134 5826190 22 105 32.5 35.0 33.8 0.6 163 chr2L 5826027 intron TrissinR + chr2L 5826108 intron TrissinR + chr2L 5826190 intron TrissinR + chr2L_22_5825001 chr2L_5825001 RAL-303_100b 314 chr2L 5827686 5827730 chr2L 5836719 5836763 roo 50 9031 22.5 16.5 19.5 2.4 9077 chr2L 5827686 intron TrissinR + chr2L 5832224 intron TrissinR + chr2L 5836763 intron TrissinR + chr2L_50_5830001 chr2L_5830001 RAL-303_100b 315 chr2L 5827731 5827739 chr2L 5836718 5836772 roo 7 9020 18.0 16.5 17.2 0.4 9041 chr2L 5827731 intron TrissinR + chr2L 5832252 intron TrissinR + chr2L 5836772 intron TrissinR + chr2L_7_5830001 chr2L_5830001 RAL-303_100b 316 chr2L 5870447 5870506 chr2L 5870549 5870608 24 97 36.0 42.5 39.2 0.6 161 chr2L 5870447 intron rau - chr2L 5870528 intron rau - chr2L 5870608 intron rau - chr2L_24_5870001 chr2L_5870001 RAL-303_100b 317 chr2L 5878568 5878595 chr2L 5878677 5878689 14 106 56.5 48.5 52.5 0.3 121 chr2L 5878568 intron rau - chr2L 5878628 intron rau - chr2L 5878689 intron rau - chr2L_14_5875001 chr2L_5875001 RAL-303_100b 318 chr2L 5878598 5878621 chr2L 5878676 5878730 14 106 48.0 48.0 48.0 0.3 132 chr2L 5878598 intron rau - chr2L 5878664 intron rau - chr2L 5878730 intron rau - chr2L_14_5875001 chr2L_5875001 RAL-303_100b 319 chr2L 5897578 5897628 chr2L 5897681 5897699 31 100 51.0 54.5 52.8 0.6 121 chr2L 5897578 intergenic not near genes chr2L 5897638 intergenic not near genes chr2L 5897699 intergenic not near genes chr2L_31_5895001 chr2L_5895001 RAL-303_100b 320 chr2L 5922909 5922952 chr2L 5923011 5923069 10 111 1.5 21.5 11.5 0.8 160 chr2L 5922909 3` UTR CG9016 - chr2L 5922989 3` UTR CG9016 - chr2L 5923069 3` UTR CG9016 - chr2L_10_5920001 chr2L_5920001 RAL-303_100b 321 chr2L 5926241 5926455 chr2L 5926346 5926568 19 150 0.0 3.5 1.8 6.8 327 chr2L 5926241 intron dsf + chr2L 5926404 intron dsf + chr2L 5926568 intron dsf + chr2L_19_5925001 chr2L_5925001 RAL-303_100b 322 chr2L 5926579 5926627 chr2L 5926683 5926731 21 102 6.5 0.0 3.2 5.0 152 chr2L 5926579 intron dsf + chr2L 5926655 intron dsf + chr2L 5926731 intron dsf + chr2L_21_5925001 chr2L_5925001 RAL-303_100b 323 chr2L 5931294 5931517 chr2L 5931431 5931651 58 135 22.5 13.0 17.8 3.1 357 chr2L 5931294 intron dsf + chr2L 5931472 intron dsf + chr2L 5931651 intron dsf + chr2L_58_5930001 chr2L_5930001 RAL-303_100b 324 chr2L 5946696 5946729 chr2L 5946799 5946837 18 106 97.0 94.0 95.5 0.2 141 chr2L 5946696 intron Gpdh + chr2L 5946766 intron Gpdh + chr2L 5946837 intron Gpdh + chr2L_18_5945001 chr2L_5945001 RAL-303_100b 325 chr2L 5944553 5944586 chr2L 5948976 5949018 12 4421 91.5 83.5 87.5 0.1 4465 chr2L 5944553 intron Gpdh + chr2L 5946786 intron Gpdh + chr2L 5949018 intergenic Gpdh +,CG9044 + chr2L_12_5945001 chr2L_5945001 RAL-303_100b 326 chr2L 5982118 5982128 chr2L 5982221 5982222 4 101 39.5 46.5 43.0 0.1 104 chr2L 5982118 intron eIF-4a + chr2L 5982170 intron eIF-4a + chr2L 5982222 intron eIF-4a + chr2L_4_5980001 chr2L_5980001 RAL-303_100b 327 chr2L 5982129 5982166 chr2L 5982215 5982220 14 94 38.5 44.0 41.2 0.3 91 chr2L 5982129 intron eIF-4a + chr2L 5982174 intron eIF-4a + chr2L 5982220 intron eIF-4a + chr2L_14_5980001 chr2L_5980001 RAL-303_100b 328 chr2L 6007070 6007113 chr2L 6007171 6007194 9 98 38.5 29.5 34.0 0.3 124 chr2L 6007070 intergenic Gal -,CG9098 - chr2L 6007132 intergenic CG9098 -,Gal - chr2L 6007194 intergenic CG9098 -,Gal - chr2L_9_6005001 chr2L_6005001 RAL-303_100b 329 chr2L 6053212 6053254 chr2L 6053450 6053501 26 239 45.0 40.0 42.5 0.6 289 chr2L 6053212 exon CG9135 + chr2L 6053356 3` UTR CG9135 + chr2L 6053501 3` UTR CG9135 + chr2L_26_6050001 chr2L_6050001 RAL-303_100b 330 chr2L 6136529 6136582 chr2L 6136651 6136704 20 121 33.0 27.0 30.0 0.6 175 chr2L 6136529 intergenic not near genes chr2L 6136616 intergenic not near genes chr2L 6136704 intergenic not near genes chr2L_20_6135001 chr2L_6135001 RAL-303_100b 331 chr2L 6185414 6185469 chr2L 6185517 6185567 62 98 13.5 13.5 13.5 4.3 153 chr2L 6185414 intron CG34380 + chr2L 6185490 intron CG34380 + chr2L 6185567 intron CG34380 + chr2L_62_6185001 chr2L_6185001 RAL-303_100b 332 chr2L 6199999 6200031 chr2L 6200159 6200207 14 174 43.5 38.5 41.0 0.3 208 chr2L 6199999 intron CG34380 + chr2L 6200103 intron CG34380 + chr2L 6200207 intron CG34380 + chr2L_14_6200001 chr2L_6200001 RAL-303_100b 333 chr2L 6227373 6227385 chr2L 6227453 6227491 7 102 26.0 22.5 24.2 0.3 118 chr2L 6227373 intergenic not near genes chr2L 6227432 intergenic not near genes chr2L 6227491 intergenic not near genes chr2L_7_6225001 chr2L_6225001 RAL-303_100b 334 chr2L 6233462 6233470 chr2L 6233563 6233569 6 100 62.0 41.0 51.5 0.1 107 chr2L 6233462 intergenic not near genes chr2L 6233516 intergenic not near genes chr2L 6233569 intergenic not near genes chr2L_6_6230001 chr2L_6230001 RAL-303_100b 335 chr2L 6242954 6242982 chr2L 6243077 6243105 20 122 19.5 22.5 21.0 0.9 151 chr2L 6242954 intergenic not near genes chr2L 6243030 intergenic not near genes chr2L 6243105 intergenic not near genes chr2L_20_6240001 chr2L_6240001 RAL-303_100b 336 chr2L 6253596 6253635 chr2L 6253697 6253736 12 100 36.0 32.0 34.0 0.3 140 chr2L 6253596 intron Ddr + chr2L 6253666 intron Ddr + chr2L 6253736 intron Ddr + chr2L_12_6250001 chr2L_6250001 RAL-303_100b 337 chr2L 6279616 6279653 chr2L 6279720 6279757 INE-1 7 104 47.5 40.5 44.0 0.2 141 chr2L 6279616 intron Ddr + chr2L 6279686 intron Ddr + chr2L 6279757 intron Ddr + chr2L_7_6275001 chr2L_6275001 RAL-303_100b 338 chr2L 6283917 6283944 chr2L 6284053 6284080 17 135 28.5 4.5 16.5 1.0 163 chr2L 6283917 intron Ddr + chr2L 6283998 intron Ddr + chr2L 6284080 intron Ddr + chr2L_17_6280001 chr2L_6280001 RAL-303_100b 339 chr2L 6285873 6285926 chr2L 6286064 6286117 26 188 42.5 37.5 40.0 0.6 244 chr2L 6285873 intron Ddr + chr2L 6285995 intron Ddr + chr2L 6286117 intron Ddr + chr2L_26_6285001 chr2L_6285001 RAL-303_100b 340 chr2L 6313295 6313322 chr2L 6313447 6313463 4 146 33.5 38.5 36.0 0.1 168 chr2L 6313295 intron Ddr + chr2L 6313379 intron Ddr + chr2L 6313463 intron Ddr + chr2L_4_6310001 chr2L_6310001 RAL-303_100b 341 chr2L 6318710 6318764 chr2L 6318889 6318943 22 178 52.0 42.0 47.0 0.5 233 chr2L 6318710 intron Ddr + chr2L 6318826 intron Ddr + chr2L 6318943 intron Ddr + chr2L_22_6315001 chr2L_6315001 RAL-303_100b 342 chr2L 6343669 6343699 chr2L 6343958 6343988 21 294 103.5 80.5 92.0 0.2 319 chr2L 6343669 intron Cpr + chr2L 6343828 intron Cpr + chr2L 6343988 intron Cpr + chr2L_21_6340001 chr2L_6340001 RAL-303_100b 343 chr2L 6349053 6349071 chr2L 6349156 6349174 14 103 50.5 43.5 47.0 0.3 121 chr2L 6349053 intergenic CG9498 - chr2L 6349114 intergenic CG9498 - chr2L 6349174 intergenic CG9498 - chr2L_14_6345001 chr2L_6345001 RAL-303_100b 344 chr2L 6363125 6363181 chr2L 6366071 6366128 Burdock 53 2946 12.0 14.5 13.2 3.7 3003 chr2L 6363125 intergenic not near genes chr2L 6364626 intergenic not near genes chr2L 6366128 intergenic not near genes chr2L_53_6360001 chr2L_6360001 RAL-303_100b 345 chr2L 6414969 6415018 chr2L 6415085 6415134 19 115 26.0 32.5 29.2 0.6 165 chr2L 6414969 3` UTR CG13982 + chr2L 6415052 3` UTR CG13982 + chr2L 6415134 3` UTR CG13982 + chr2L_19_6415001 chr2L_6415001 RAL-303_100b 346 chr2L 6426832 6426885 chr2L 6445117 6445170 roo 54 18284 16.5 16.5 16.5 3.1 18338 chr2L 6426832 3` UTR CG9527 - chr2L 6436001 intron CG9527 - chr2L 6445170 exon CG9527 - chr2L_54_6435001 chr2L_6435001 RAL-303_100b 347 chr2L 6463537 6463582 chr2L 6463654 6463674 18 106 36.5 27.5 32.0 0.5 137 chr2L 6463537 exon CG16947 - chr2L 6463606 exon CG16947 - chr2L 6463674 exon CG16947 - chr2L_18_6460001 chr2L_6460001 RAL-303_100b 348 chr2L 6522919 6522936 chr2L 6523018 6523023 9 96 56.5 45.5 51.0 0.2 104 chr2L 6522919 intron CG31637 + chr2L 6522971 intron CG31637 + chr2L 6523023 intron CG31637 + chr2L_9_6520001 chr2L_6520001 RAL-303_100b 349 chr2L 6522940 6522963 chr2L 6523017 6523053 9 99 48.0 45.0 46.5 0.2 113 chr2L 6522940 intron CG31637 + chr2L 6522996 intron CG31637 + chr2L 6523053 intron CG31637 + chr2L_9_6520001 chr2L_6520001 RAL-303_100b 350 chr2L 6527229 6527239 chr2L 6527333 6527337 8 103 9.0 13.0 11.0 0.7 108 chr2L 6527229 intergenic eya -,CG31637 + chr2L 6527283 intergenic eya -,CG31637 + chr2L 6527337 intergenic eya -,CG31637 + chr2L_8_6525001 chr2L_6525001 RAL-303_100b 351 chr2L 6544345 6544395 chr2L 6544462 6544512 45 116 13.0 12.5 12.8 3.3 167 chr2L 6544345 intron eya - chr2L 6544428 intron eya - chr2L 6544512 intron eya - chr2L_45_6540001 chr2L_6540001 RAL-303_100b 352 chr2L 6590082 6590125 chr2L 6590175 6590228 23 97 18.0 16.5 17.2 1.3 146 chr2L 6590082 intron CG11319 - chr2L 6590155 intron CG11319 - chr2L 6590228 intron CG11319 - chr2L_23_6590001 chr2L_6590001 RAL-303_100b 353 chr2L 6655504 6655547 chr2L 6655888 6655934 38 383 9.5 14.5 12.0 2.9 430 chr2L 6655504 exon CG31633 - chr2L 6655719 exon CG31633 - chr2L 6655934 exon CG31633 - chr2L_38_6655001 chr2L_6655001 RAL-303_100b 354 chr2L 6756826 6756875 chr2L 6756945 6756994 22 116 34.5 33.0 33.8 0.6 168 chr2L 6756826 intergenic not near genes chr2L 6756910 intergenic not near genes chr2L 6756994 intergenic not near genes chr2L_22_6755001 chr2L_6755001 RAL-303_100b 355 chr2L 6771974 6771977 chr2L 6772071 6772083 5 107 47.0 19.5 33.2 0.1 109 chr2L 6771974 intron CG11321 - chr2L 6772028 intron CG11321 - chr2L 6772083 intron CG11321 - chr2L_5_6770001 chr2L_6770001 RAL-303_100b 356 chr2L 6771978 6772022 chr2L 6772070 6772118 28 98 12.0 19.5 15.8 1.7 140 chr2L 6771978 intron CG11321 - chr2L 6772048 intron CG11321 - chr2L 6772118 intron CG11321 - chr2L_28_6770001 chr2L_6770001 RAL-303_100b 357 chr2L 6795187 6795238 chr2L 6795293 6795329 36 105 37.0 36.5 36.8 1.0 142 chr2L 6795187 intron nrv2 - chr2L 6795258 intron nrv2 - chr2L 6795329 intron nrv2 - chr2L_36_6795001 chr2L_6795001 RAL-303_100b 358 chr2L 6795650 6795659 chr2L 6795887 6795896 5 237 38.0 50.5 44.2 0.1 246 chr2L 6795650 intron nrv2 - chr2L 6795773 intron nrv2 - chr2L 6795896 intron nrv2 - chr2L_5_6795001 chr2L_6795001 RAL-303_100b 359 chr2L 6795665 6795677 chr2L 6795882 6795904 9 229 37.5 49.5 43.5 0.2 239 chr2L 6795665 intron nrv2 - chr2L 6795784 intron nrv2 - chr2L 6795904 intron nrv2 - chr2L_9_6795001 chr2L_6795001 RAL-303_100b 360 chr2L 6795678 6795685 chr2L 6795877 6795882 6 220 36.5 46.5 41.5 0.1 204 chr2L 6795678 intron nrv2 - chr2L 6795780 intron nrv2 - chr2L 6795882 intron nrv2 - chr2L_6_6795001 chr2L_6795001 RAL-303_100b 361 chr2L 6799512 6799571 chr2L 6799625 6799673 42 108 11.0 9.5 10.2 3.8 161 chr2L 6799512 5` UTR CR43610 + chr2L 6799592 5` UTR CR43610 + chr2L 6799673 intergenic CR43610 +,CG17376 - chr2L_42_6795001 chr2L_6795001 RAL-303_100b 362 chr2L 6850354 6850405 chr2L 6850462 6850513 45 107 13.5 10.0 11.8 3.5 159 chr2L 6850354 intergenic not near genes chr2L 6850434 intergenic not near genes chr2L 6850513 intergenic not near genes chr2L_45_6850001 chr2L_6850001 RAL-303_100b 363 chr2L 6851501 6851535 chr2L 6851602 6851636 6 101 18.5 14.0 16.2 0.3 135 chr2L 6851501 intergenic not near genes chr2L 6851568 intergenic not near genes chr2L 6851636 intergenic not near genes chr2L_6_6850001 chr2L_6850001 RAL-303_100b 364 chr2L 6867728 6867774 chr2L 6867841 6867889 5 113 42.0 36.5 39.2 0.1 161 chr2L 6867728 intron Nha1 - chr2L 6867808 intron Nha1 - chr2L 6867889 intron Nha1 - chr2L_5_6865001 chr2L_6865001 RAL-303_100b 365 chr2L 6876773 6876810 chr2L 6882969 6883018 diver 28 6207 22.0 11.5 16.8 1.6 6245 chr2L 6876773 intron Nlg2 + chr2L 6879896 intron Nlg2 + chr2L 6883018 intron Nlg2 + chr2L_28_6875001 chr2L_6875001 RAL-303_100b 366 chr2L 6886058 6886104 chr2L 6886471 6886497 23 411 34.5 43.0 38.8 0.6 439 chr2L 6886058 intron Nlg2 + chr2L 6886278 intron Nlg2 + chr2L 6886497 intron Nlg2 + chr2L_23_6885001 chr2L_6885001 RAL-303_100b 367 chr2L 6887474 6887526 chr2L 6887648 6887703 12 176 13.0 0.0 6.5 1.6 229 chr2L 6887474 intron Nlg2 + chr2L 6887588 intron Nlg2 + chr2L 6887703 intron Nlg2 + chr2L_12_6885001 chr2L_6885001 RAL-303_100b 368 chr2L 6991394 6991436 chr2L 6998549 6998580 HMS-Beagle 8 7145 7.0 16.5 11.8 0.6 7186 chr2L 6991394 intron uif - chr2L 6994987 intron uif - chr2L 6998580 intron uif - chr2L_8_6990001 chr2L_6990001 RAL-303_100b 369 chr2L 7003795 7003802 chr2L 7003920 7003927 6 125 50.5 39.0 44.8 0.1 132 chr2L 7003795 intron uif - chr2L 7003861 intron uif - chr2L 7003927 intron uif - chr2L_6_7000001 chr2L_7000001 RAL-303_100b 370 chr2L 7003803 7003821 chr2L 7003912 7003941 18 122 42.5 36.0 39.2 0.4 138 chr2L 7003803 intron uif - chr2L 7003872 intron uif - chr2L 7003941 intron uif - chr2L_18_7000001 chr2L_7000001 RAL-303_100b 371 chr2L 7005216 7005247 chr2L 7005333 7005368 8 119 40.0 35.0 37.5 0.2 152 chr2L 7005216 intron uif - chr2L 7005292 intron uif - chr2L 7005368 intron uif - chr2L_8_7005001 chr2L_7005001 RAL-303_100b 372 chr2L 7007696 7007728 chr2L 7007801 7007833 10 104 45.0 24.5 34.8 0.3 137 chr2L 7007696 intron uif - chr2L 7007764 intron uif - chr2L 7007833 intron uif - chr2L_10_7005001 chr2L_7005001 RAL-303_100b 373 chr2L 7026956 7026991 chr2L 7027056 7027096 26 102 50.5 53.5 52.0 0.5 140 chr2L 7026956 5` UTR CG31908 - chr2L 7027026 5` UTR CG31908 - chr2L 7027096 5` UTR CG31908 - chr2L_26_7025001 chr2L_7025001 RAL-303_100b 374 chr2L 7030053 7030108 chr2L 7030159 7030214 22 105 40.0 35.5 37.8 0.6 161 chr2L 7030053 intergenic Rab30 - chr2L 7030134 intergenic Rab30 - chr2L 7030214 intergenic Rab30 - chr2L_22_7030001 chr2L_7030001 RAL-303_100b 375 chr2L 7041252 7041287 chr2L 7041365 7041401 14 114 16.0 16.0 16.0 0.8 149 chr2L 7041252 intron milt + chr2L 7041326 intron milt + chr2L 7041401 intron milt + chr2L_14_7040001 chr2L_7040001 RAL-303_100b 376 chr2L 7042037 7042075 chr2L 7042151 7042184 21 113 9.5 10.0 9.8 1.9 147 chr2L 7042037 intron milt + chr2L 7042110 intron milt + chr2L 7042184 intron milt + chr2L_21_7040001 chr2L_7040001 RAL-303_100b 377 chr2L 7043507 7043529 chr2L 7043666 7043688 13 159 33.5 39.0 36.2 0.3 181 chr2L 7043507 intron milt + chr2L 7043598 intron milt + chr2L 7043688 intron milt + chr2L_13_7040001 chr2L_7040001 RAL-303_100b 378 chr2L 7082873 7082892 chr2L 7082984 7083004 10 111 5.0 15.0 10.0 0.9 131 chr2L 7082873 intron Pvf2 - chr2L 7082938 intron Pvf2 - chr2L 7083004 intron Pvf2 - chr2L_10_7080001 chr2L_7080001 RAL-303_100b 379 chr2L 7088886 7088900 chr2L 7089112 7089126 11 226 28.0 29.0 28.5 0.4 240 chr2L 7088886 intergenic not near genes chr2L 7089006 intergenic not near genes chr2L 7089126 intergenic not near genes chr2L_11_7085001 chr2L_7085001 RAL-303_100b 380 chr2L 7089594 7089640 chr2L 7089704 7089744 24 109 11.0 38.0 24.5 0.9 150 chr2L 7089594 intergenic not near genes chr2L 7089669 intergenic not near genes chr2L 7089744 intergenic not near genes chr2L_24_7085001 chr2L_7085001 RAL-303_100b 381 chr2L 7103055 7103099 chr2L 7103291 7103333 17 234 2.0 38.0 20.0 0.8 278 chr2L 7103055 intron Pvf3 - chr2L 7103194 intron Pvf3 - chr2L 7103333 intron Pvf3 - chr2L_17_7100001 chr2L_7100001 RAL-303_100b 382 chr2L 7111731 7111772 chr2L 7111842 7111868 13 109 6.5 0.5 3.5 2.9 137 chr2L 7111731 intron Pvf3 - chr2L 7111800 intron Pvf3 - chr2L 7111868 intron Pvf3 - chr2L_13_7110001 chr2L_7110001 RAL-303_100b 383 chr2L 7125767 7125809 chr2L 7125908 7125949 16 139 29.0 24.5 26.8 0.6 182 chr2L 7125767 intron Pvf3 - chr2L 7125858 intron Pvf3 - chr2L 7125949 intron Pvf3 - chr2L_16_7125001 chr2L_7125001 RAL-303_100b 384 chr2L 7126835 7126870 chr2L 7126939 7126974 21 103 21.5 0.5 11.0 1.8 139 chr2L 7126835 intron Pvf3 - chr2L 7126904 intron Pvf3 - chr2L 7126974 intron Pvf3 - chr2L_21_7125001 chr2L_7125001 RAL-303_100b 385 chr2L 7165758 7165812 chr2L 7165864 7165918 35 105 43.5 50.5 47.0 0.7 160 chr2L 7165758 intergenic not near genes chr2L 7165838 intergenic not near genes chr2L 7165918 intergenic not near genes chr2L_35_7165001 chr2L_7165001 RAL-303_100b 386 chr2L 7169696 7169697 chr2L 7169807 7169828 5 127 34.0 26.5 30.2 0.2 132 chr2L 7169696 intergenic not near genes chr2L 7169762 intergenic not near genes chr2L 7169828 intergenic not near genes chr2L_5_7165001 chr2L_7165001 RAL-303_100b 387 chr2L 7197972 7198021 chr2L 7198076 7198125 31 100 40.0 41.5 40.8 0.7 153 chr2L 7197972 intron CG4502 - chr2L 7198048 intron CG4502 - chr2L 7198125 intron CG4502 - chr2L_31_7195001 chr2L_7195001 RAL-303_100b 388 chr2L 7218377 7218434 chr2L 7218480 7218537 25 103 24.0 22.0 23.0 1.0 160 chr2L 7218377 intron CG13784 - chr2L 7218457 intron CG13784 - chr2L 7218537 intron CG13784 - chr2L_25_7215001 chr2L_7215001 RAL-303_100b 389 chr2L 7235111 7235146 chr2L 7235225 7235265 10 118 40.5 50.0 45.2 0.2 154 chr2L 7235111 intron Ndae1 - chr2L 7235188 intron Ndae1 - chr2L 7235265 intron Ndae1 - chr2L_10_7235001 chr2L_7235001 RAL-303_100b 390 chr2L 7246529 7246563 chr2L 7247413 7247447 7 884 32.0 43.5 37.8 0.2 918 chr2L 7246529 intron Ndae1 - chr2L 7246988 intron Ndae1 - chr2L 7247447 intron Ndae1 - chr2L_7_7245001 chr2L_7245001 RAL-303_100b 391 chr2L 7268459 7268465 chr2L 7268547 7268570 6 102 23.0 38.0 30.5 0.2 111 chr2L 7268459 intron Wnt4 - chr2L 7268514 intron Wnt4 - chr2L 7268570 intron Wnt4 - chr2L_6_7265001 chr2L_7265001 RAL-303_100b 392 chr2L 7325891 7325945 chr2L 7326000 7326047 30 106 16.0 11.0 13.5 2.1 156 chr2L 7325891 intergenic not near genes chr2L 7325969 intergenic not near genes chr2L 7326047 intergenic not near genes chr2L_30_7325001 chr2L_7325001 RAL-303_100b 393 chr2L 7326461 7326503 chr2L 7326604 7326646 18 140 16.0 12.0 14.0 1.2 185 chr2L 7326461 intergenic not near genes chr2L 7326554 intergenic not near genes chr2L 7326646 intergenic not near genes chr2L_18_7325001 chr2L_7325001 RAL-303_100b 394 chr2L 7330245 7330294 chr2L 7330349 7330398 7 104 23.0 28.5 25.8 0.3 153 chr2L 7330245 intergenic not near genes chr2L 7330322 intergenic not near genes chr2L 7330398 intergenic not near genes chr2L_7_7330001 chr2L_7330001 RAL-303_100b 395 chr2L 7335178 7335230 chr2L 7335300 7335352 14 121 24.0 25.0 24.5 0.5 174 chr2L 7335178 intron Wnt6 + chr2L 7335265 intron Wnt6 + chr2L 7335352 intron Wnt6 + chr2L_14_7335001 chr2L_7335001 RAL-303_100b 396 chr2L 7336871 7336898 chr2L 7336979 7337006 11 107 21.5 24.0 22.8 0.5 135 chr2L 7336871 intron Wnt6 + chr2L 7336938 intron Wnt6 + chr2L 7337006 intron Wnt6 + chr2L_11_7335001 chr2L_7335001 RAL-303_100b 397 chr2L 7336900 7336912 chr2L 7336978 7337020 10 101 21.0 24.0 22.5 0.4 120 chr2L 7336900 intron Wnt6 + chr2L 7336960 intron Wnt6 + chr2L 7337020 intron Wnt6 + chr2L_10_7335001 chr2L_7335001 RAL-303_100b 398 chr2L 7340046 7340051 chr2L 7340144 7340155 9 102 0.0 28.0 14.0 0.6 109 chr2L 7340046 intron Wnt6 + chr2L 7340100 intron Wnt6 + chr2L 7340155 intron Wnt6 + chr2L_9_7340001 chr2L_7340001 RAL-303_100b 399 chr2L 7343300 7343358 chr2L 7350441 7350498 roo 48 7137 15.0 16.5 15.8 2.9 7198 chr2L 7343300 intron Wnt6 + chr2L 7346899 intron Wnt6 + chr2L 7350498 intron Wnt6 + chr2L_48_7345001 chr2L_7345001 RAL-303_100b 400 chr2L 7367426 7367452 chr2L 9623572 9623572 4 2256134 37.5 46.0 41.8 0.1 2256146 chr2L 7367426 intron Wnt10 + chr2L 8495499 intron,exon Dh31 -,Bace - chr2L 9623572 intergenic GlcAT-S + chr2L_4_8495001 chr2L_8495001 RAL-303_100b 401 chr2L 7377865 7377901 chr2L 7377987 7378017 13 118 9.5 29.5 19.5 0.6 152 chr2L 7377865 5` UTR ninaC + chr2L 7377941 intron ninaC + chr2L 7378017 intron ninaC + chr2L_13_7375001 chr2L_7375001 RAL-303_100b 402 chr2L 7394935 7394957 chr2L 7395056 7395078 9 120 30.5 29.5 30.0 0.3 143 chr2L 7394935 intron CG5160 - chr2L 7395006 intron CG5160 - chr2L 7395078 intron CG5160 - chr2L_9_7395001 chr2L_7395001 RAL-303_100b 403 chr2L 7399288 7399290 chr2L 7399686 7399688 4 398 29.5 46.5 38.0 0.1 400 chr2L 7399288 intergenic not near genes chr2L 7399488 intergenic not near genes chr2L 7399688 intergenic not near genes chr2L_4_7395001 chr2L_7395001 RAL-303_100b 404 chr2L 7399291 7399308 chr2L 7399682 7399706 6 397 28.5 44.5 36.5 0.2 415 chr2L 7399291 intergenic not near genes chr2L 7399498 intergenic not near genes chr2L 7399706 intergenic not near genes chr2L_6_7395001 chr2L_7395001 RAL-303_100b 405 chr2L 7399314 7399333 chr2L 7399681 7399731 9 394 29.5 45.0 37.2 0.2 417 chr2L 7399314 intergenic not near genes chr2L 7399522 intergenic not near genes chr2L 7399731 intergenic not near genes chr2L_9_7395001 chr2L_7395001 RAL-303_100b 406 chr2L 7406918 7406966 chr2L 7407050 7407095 9 132 0.5 0.0 0.2 7.5 177 chr2L 7406918 intron CG5177 + chr2L 7407006 intron CG5177 + chr2L 7407095 intron CG5177 + chr2L_9_7405001 chr2L_7405001 RAL-303_100b 407 chr2L 7410673 7410675 chr2L 7410787 7410795 4 117 30.5 56.5 43.5 0.1 122 chr2L 7410673 intergenic CG15818 + chr2L 7410734 intergenic CG15818 + chr2L 7410795 intergenic CG15818 + chr2L_4_7410001 chr2L_7410001 RAL-303_100b 408 chr2L 7432207 7432263 chr2L 7432314 7432370 33 105 45.0 43.5 44.2 0.7 163 chr2L 7432207 intron CG5958 - chr2L 7432288 intron CG5958 - chr2L 7432370 intron CG5958 - chr2L_33_7430001 chr2L_7430001 RAL-303_100b 409 chr2L 7487579 7487635 chr2L 7487769 7487826 27 188 45.0 39.0 42.0 0.6 247 chr2L 7487579 intron Ziz - chr2L 7487702 intron Ziz - chr2L 7487826 intron Ziz - chr2L_27_7485001 chr2L_7485001 RAL-303_100b 410 chr2L 7493404 7493417 chr2L 7493515 7493528 7 111 0.0 19.5 9.8 0.6 124 chr2L 7493404 intron Ziz - chr2L 7493466 intron Ziz - chr2L 7493528 intron Ziz - chr2L_7_7490001 chr2L_7490001 RAL-303_100b 411 chr2L 7493648 7493659 chr2L 7493884 7493895 13 236 37.0 3.5 20.2 0.6 247 chr2L 7493648 intron Ziz - chr2L 7493772 intron Ziz - chr2L 7493895 intron Ziz - chr2L_13_7490001 chr2L_7490001 RAL-303_100b 412 chr2L 7493660 7493702 chr2L 7493883 7493932 41 233 14.5 3.5 9.0 4.1 272 chr2L 7493660 intron Ziz - chr2L 7493796 intron Ziz - chr2L 7493932 intron Ziz - chr2L_41_7490001 chr2L_7490001 RAL-303_100b 413 chr2L 7516141 7516193 chr2L 7516253 7516305 19 109 42.5 47.0 44.8 0.4 164 chr2L 7516141 intron RapGAP1 - chr2L 7516223 intron RapGAP1 - chr2L 7516305 intron RapGAP1 - chr2L_19_7515001 chr2L_7515001 RAL-303_100b 414 chr2L 7535823 7535854 chr2L 7535931 7535968 18 112 31.5 49.0 40.2 0.4 145 chr2L 7535823 intron RapGAP1 - chr2L 7535896 intron RapGAP1 - chr2L 7535968 intron RapGAP1 - chr2L_18_7535001 chr2L_7535001 RAL-303_100b 415 chr2L 7548088 7548111 chr2L 7550554 7550562 Burdock 11 2465 12.0 16.5 14.2 0.7 2474 chr2L 7548088 intron RapGAP1 - chr2L 7549325 intron RapGAP1 - chr2L 7550562 intron RapGAP1 - chr2L_11_7545001 chr2L_7545001 RAL-303_100b 416 chr2L 7555191 7555234 chr2L 7555293 7555336 22 102 0.0 12.5 6.2 3.1 145 chr2L 7555191 intron RapGAP1 - chr2L 7555264 intron RapGAP1 - chr2L 7555336 intron RapGAP1 - chr2L_22_7555001 chr2L_7555001 RAL-303_100b 417 chr2L 7562161 7562193 chr2L 7562266 7562298 9 105 33.5 33.5 33.5 0.3 137 chr2L 7562161 intron RapGAP1 - chr2L 7562230 intron RapGAP1 - chr2L 7562298 intron RapGAP1 - chr2L_9_7560001 chr2L_7560001 RAL-303_100b 418 chr2L 7567467 7567515 chr2L 7567564 7567617 25 99 54.5 53.5 54.0 0.5 150 chr2L 7567467 intron RapGAP1 - chr2L 7567542 intron RapGAP1 - chr2L 7567617 intron RapGAP1 - chr2L_25_7565001 chr2L_7565001 RAL-303_100b 419 chr2L 7569692 7569743 chr2L 7571006 7571062 22 1315 93.0 63.5 78.2 0.3 1370 chr2L 7569692 intron RapGAP1 - chr2L 7570377 intron RapGAP1 - chr2L 7571062 intron RapGAP1 - chr2L_22_7570001 chr2L_7570001 RAL-303_100b 420 chr2L 7568816 7568818 chr2L 7571415 7571423 4 2600 59.5 42.5 51.0 0.1 2607 chr2L 7568816 intron RapGAP1 - chr2L 7570120 intron RapGAP1 - chr2L 7571423 intron RapGAP1 - chr2L_4_7570001 chr2L_7570001 RAL-303_100b 421 chr2L 7579166 7579227 chr2L 7579382 7579408 BS 17 212 0.0 7.0 3.5 3.8 242 chr2L 7579166 intergenic RapGAP1 - chr2L 7579287 intergenic RapGAP1 - chr2L 7579408 intergenic RapGAP1 - chr2L_17_7575001 chr2L_7575001 RAL-303_100b 422 chr2L 7585481 7585495 chr2L 7585605 7585619 8 123 20.5 4.0 12.2 0.6 138 chr2L 7585481 intergenic not near genes chr2L 7585550 intergenic not near genes chr2L 7585619 intergenic not near genes chr2L_8_7585001 chr2L_7585001 RAL-303_100b 423 chr2L 7621809 7621824 chr2L 7621926 7621941 8 117 25.0 40.0 32.5 0.2 132 chr2L 7621809 intergenic not near genes chr2L 7621875 intergenic not near genes chr2L 7621941 intergenic not near genes chr2L_8_7620001 chr2L_7620001 RAL-303_100b 424 chr2L 7629134 7629165 chr2L 7629246 7629277 29 110 43.0 43.0 43.0 0.7 143 chr2L 7629134 intergenic not near genes chr2L 7629206 intergenic not near genes chr2L 7629277 intergenic not near genes chr2L_29_7625001 chr2L_7625001 RAL-303_100b 425 chr2L 7629166 7629192 chr2L 7629243 7629289 11 106 35.5 40.5 38.0 0.3 123 chr2L 7629166 intergenic not near genes chr2L 7629228 intergenic not near genes chr2L 7629289 intergenic not near genes chr2L_11_7625001 chr2L_7625001 RAL-303_100b 426 chr2L 7656032 7656086 chr2L 7656170 7656177 25 129 43.5 54.0 48.8 0.5 145 chr2L 7656032 exon Slob - chr2L 7656104 exon Slob - chr2L 7656177 exon Slob - chr2L_25_7655001 chr2L_7655001 RAL-303_100b 427 chr2L 7676271 7676274 chr2L 7676578 7676581 4 307 26.0 2.0 14.0 0.3 310 chr2L 7676271 intron Myo28B1 + chr2L 7676426 intron Myo28B1 + chr2L 7676581 intron Myo28B1 + chr2L_4_7675001 chr2L_7675001 RAL-303_100b 428 chr2L 7766608 7766654 chr2L 7766704 7766750 20 93 14.0 7.5 10.8 1.7 142 chr2L 7766608 intergenic not near genes chr2L 7766679 intergenic not near genes chr2L 7766750 intergenic not near genes chr2L_20_7765001 chr2L_7765001 RAL-303_100b 429 chr2L 7779405 7779413 chr2L 7779549 7779562 6 148 31.0 29.5 30.2 0.2 157 chr2L 7779405 intergenic not near genes chr2L 7779484 intergenic not near genes chr2L 7779562 intergenic not near genes chr2L_6_7775001 chr2L_7775001 RAL-303_100b 430 chr2L 7829462 7829517 chr2L 7829582 7829637 25 116 36.0 39.0 37.5 0.6 175 chr2L 7829462 intron mts + chr2L 7829550 intron mts + chr2L 7829637 intron mts + chr2L_25_7825001 chr2L_7825001 RAL-303_100b 431 chr2L 7854226 7854285 chr2L 7854328 7854387 31 101 40.5 38.5 39.5 0.8 161 chr2L 7854226 intron CG14535 - chr2L 7854306 intron CG14535 - chr2L 7854387 intron CG14535 - chr2L_31_7850001 chr2L_7850001 RAL-303_100b 432 chr2L 7867544 7867596 chr2L 7867663 7867715 20 117 38.5 37.5 38.0 0.5 171 chr2L 7867544 intron Proc - chr2L 7867630 intron Proc - chr2L 7867715 intron Proc - chr2L_20_7865001 chr2L_7865001 RAL-303_100b 433 chr2L 7917349 7917365 chr2L 7917467 7917483 4 118 45.5 47.0 46.2 0.1 134 chr2L 7917349 intron Snoo - chr2L 7917416 intron Snoo - chr2L 7917483 intron Snoo - chr2L_4_7915001 chr2L_7915001 RAL-303_100b 434 chr2L 7921086 7921116 chr2L 7921187 7921198 11 104 33.5 43.5 38.5 0.3 112 chr2L 7921086 intron Snoo - chr2L 7921142 intron Snoo - chr2L 7921198 intron Snoo - chr2L_11_7920001 chr2L_7920001 RAL-303_100b 435 chr2L 7941176 7941196 chr2L 7941280 7941300 21 102 17.5 25.0 21.2 0.9 124 chr2L 7941176 intron Snoo - chr2L 7941238 intron Snoo - chr2L 7941300 intron Snoo - chr2L_21_7940001 chr2L_7940001 RAL-303_100b 436 chr2L 7946681 7946734 chr2L 7947039 7947092 23 355 40.0 42.0 41.0 0.5 411 chr2L 7946681 intron Snoo - chr2L 7946886 intron Snoo - chr2L 7947092 intron Snoo - chr2L_23_7945001 chr2L_7945001 RAL-303_100b 437 chr2L 7959017 7959040 chr2L 7960453 7960476 pogo 22 1436 27.5 1.0 14.2 1.4 1459 chr2L 7959017 intron Snoo - chr2L 7959746 intron Snoo - chr2L 7960476 intron Snoo - chr2L_22_7955001 chr2L_7955001 RAL-303_100b 438 chr2L 7959044 7959072 chr2L 7960452 7960510 pogo 8 1427 10.5 1.0 5.8 1.2 1466 chr2L 7959044 intron Snoo - chr2L 7959777 intron Snoo - chr2L 7960510 intron Snoo - chr2L_8_7955001 chr2L_7955001 RAL-303_100b 439 chr2L 7977067 7977113 chr2L 7984064 7984113 297 38 6998 12.5 21.0 16.8 2.1 7046 chr2L 7977067 intron Snoo - chr2L 7980590 intron Snoo - chr2L 7984113 intron,5` UTR Snoo -,CG7231 + chr2L_38_7980001 chr2L_7980001 RAL-303_100b 440 chr2L 7986903 7986909 chr2L 7987014 7987017 5 110 11.5 22.5 17.0 0.3 114 chr2L 7986903 3` UTR pes - chr2L 7986960 3` UTR pes - chr2L 7987017 3` UTR pes - chr2L_5_7985001 chr2L_7985001 RAL-303_100b 441 chr2L 8013588 8013612 chr2L 8018818 8018832 copia 16 5228 29.5 0.0 14.8 1.0 5244 chr2L 8013588 intron Tg + chr2L 8016210 intron Tg + chr2L 8018832 intron Tg + chr2L_16_8015001 chr2L_8015001 RAL-303_100b 442 chr2L 8013620 8013647 chr2L 8023581 8023607 copia 19 9960 13.0 15.0 14.0 1.3 9987 chr2L 8013620 intron Tg + chr2L 8018614 intron Tg + chr2L 8023607 intron Tg + chr2L_19_8015001 chr2L_8015001 RAL-303_100b 443 chr2L 8018817 8018836 chr2L 8023626 8023645 Doc 16 4809 0.0 43.5 21.8 0.7 4828 chr2L 8018817 intron Tg + chr2L 8021231 intron Tg + chr2L 8023645 intron Tg + chr2L_16_8020001 chr2L_8020001 RAL-303_100b 444 chr2L 8044090 8044119 chr2L 8044176 8044223 25 99 28.0 33.5 30.8 0.8 133 chr2L 8044090 intron CG7466 + chr2L 8044156 intron CG7466 + chr2L 8044223 intron CG7466 + chr2L_25_8040001 chr2L_8040001 RAL-303_100b 445 chr2L 8108890 8108940 chr2L 8109011 8109056 13 121 31.5 31.0 31.2 0.4 166 chr2L 8108890 3` UTR Bsg + chr2L 8108973 3` UTR Bsg + chr2L 8109056 3` UTR Bsg + chr2L_13_8105001 chr2L_8105001 RAL-303_100b 446 chr2L 8167122 8167175 chr2L 8167238 8167245 27 110 39.5 50.0 44.8 0.6 123 chr2L 8167122 intron Piezo + chr2L 8167184 intron Piezo + chr2L 8167245 intron Piezo + chr2L_27_8165001 chr2L_8165001 RAL-303_100b 447 chr2L 8171275 8171298 chr2L 8171371 8171389 13 102 37.5 41.0 39.2 0.3 114 chr2L 8171275 intron Piezo + chr2L 8171332 intron Piezo + chr2L 8171389 intron Piezo + chr2L_13_8170001 chr2L_8170001 RAL-303_100b 448 chr2L 8205588 8205610 chr2L 8205710 8205732 12 122 49.0 45.0 47.0 0.2 144 chr2L 8205588 3` UTR CR44120 - chr2L 8205660 intergenic CR44120 -,CR44121 -,CR44119 + chr2L 8205732 intergenic CR44121 -,CR44120 -,CR44119 +,CG8419 + chr2L_12_8205001 chr2L_8205001 RAL-303_100b 449 chr2L 8244708 8244749 chr2L 8244855 8244896 24 146 37.5 47.5 42.5 0.6 188 chr2L 8244708 intron CG8086 - chr2L 8244802 intron CG8086 - chr2L 8244896 intron CG8086 - chr2L_24_8240001 chr2L_8240001 RAL-303_100b 450 chr2L 8271593 8271653 chr2L 8271694 8271754 19 101 6.0 11.0 8.5 2.0 161 chr2L 8271593 intron Btk29A - chr2L 8271674 intron Btk29A - chr2L 8271754 intron Btk29A - chr2L_19_8270001 chr2L_8270001 RAL-303_100b 451 chr2L 8277865 8277870 chr2L 8277970 8277975 6 105 0.0 29.5 14.8 0.4 110 chr2L 8277865 intron Btk29A - chr2L 8277920 intron Btk29A - chr2L 8277975 intron Btk29A - chr2L_6_8275001 chr2L_8275001 RAL-303_100b 452 chr2L 8286272 8286322 chr2L 8286382 8286404 33 109 51.5 43.5 47.5 0.7 132 chr2L 8286272 intron Btk29A - chr2L 8286338 intron Btk29A - chr2L 8286404 intron Btk29A - chr2L_33_8285001 chr2L_8285001 RAL-303_100b 453 chr2L 8324101 8324158 chr2L 8324218 8324275 24 115 30.5 32.0 31.2 0.7 174 chr2L 8324101 intron CG7781 - chr2L 8324188 intron CG7781 - chr2L 8324275 intron CG7781 - chr2L_24_8320001 chr2L_8320001 RAL-303_100b 454 chr2L 8330255 8330311 chr2L 8330365 8330421 12 107 28.0 26.5 27.2 0.4 166 chr2L 8330255 intron CG14275 + chr2L 8330338 intron CG14275 + chr2L 8330421 intron CG14275 + chr2L_12_8330001 chr2L_8330001 RAL-303_100b 455 chr2L 8336927 8336966 chr2L 8337031 8337070 7 104 14.5 33.5 24.0 0.3 143 chr2L 8336927 intergenic not near genes chr2L 8336998 intergenic not near genes chr2L 8337070 intergenic not near genes chr2L_7_8335001 chr2L_8335001 RAL-303_100b 456 chr2L 8350932 8350933 chr2L 8351188 8351193 4 259 42.0 40.0 41.0 0.1 261 chr2L 8350932 3` UTR CG7778 + chr2L 8351062 3` UTR CG7778 + chr2L 8351193 intergenic CG7778 + chr2L_4_8350001 chr2L_8350001 RAL-303_100b 457 chr2L 8452400 8452452 chr2L 8461591 8461616 roo 46 9194 10.5 18.5 14.5 3.0 9216 chr2L 8452400 intron fu12 - chr2L 8457008 intron fu12 - chr2L 8461616 intron fu12 - chr2L_46_8455001 chr2L_8455001 RAL-303_100b 458 chr2L 8508972 8509001 chr2L 8509098 8509121 16 125 34.5 35.0 34.8 0.4 149 chr2L 8508972 intergenic CG13096 - chr2L 8509046 intergenic CG13096 - chr2L 8509121 3` UTR CG13096 - chr2L_16_8505001 chr2L_8505001 RAL-303_100b 459 chr2L 8538139 8538194 chr2L 8538240 8538300 12 97 52.0 41.0 46.5 0.3 161 chr2L 8538139 intron CG17834 + chr2L 8538220 intron CG17834 + chr2L 8538300 intron CG17834 + chr2L_12_8535001 chr2L_8535001 RAL-303_100b 460 chr2L 8551414 8551427 chr2L 8551654 8551667 6 238 37.0 31.0 34.0 0.2 253 chr2L 8551414 intron Sema-1a + chr2L 8551540 intron Sema-1a + chr2L 8551667 intron Sema-1a + chr2L_6_8550001 chr2L_8550001 RAL-303_100b 461 chr2L 8580165 8580225 chr2L 8580271 8580331 22 105 31.5 33.5 32.5 0.7 166 chr2L 8580165 intron Sema-1a + chr2L 8580248 intron Sema-1a + chr2L 8580331 intron Sema-1a + chr2L_22_8580001 chr2L_8580001 RAL-303_100b 462 chr2L 8588876 8588926 chr2L 8588992 8589031 22 112 15.0 10.0 12.5 1.6 155 chr2L 8588876 intron Sema-1a + chr2L 8588954 intron Sema-1a + chr2L 8589031 intron Sema-1a + chr2L_22_8585001 chr2L_8585001 RAL-303_100b 463 chr2L 8594449 8594498 chr2L 8601523 8601567 297 20 7078 6.5 5.5 6.0 2.9 7118 chr2L 8594449 intron,3` UTR Sema-1a +,CR43855 - chr2L 8598008 intron Sema-1a + chr2L 8601567 intron Sema-1a + chr2L_20_8595001 chr2L_8595001 RAL-303_100b 464 chr2L 8612832 8612869 chr2L 8612934 8612971 19 101 35.5 42.0 38.8 0.5 139 chr2L 8612832 intron Sema-1a + chr2L 8612902 intron Sema-1a + chr2L 8612971 intron Sema-1a + chr2L_19_8610001 chr2L_8610001 RAL-303_100b 465 chr2L 8625250 8625527 chr2L 8625441 8625677 48 179 50.5 50.0 50.2 0.9 427 chr2L 8625250 intron Sema-1a + chr2L 8625464 intron Sema-1a + chr2L 8625677 intron Sema-1a + chr2L_48_8625001 chr2L_8625001 RAL-303_100b 466 chr2L 8644264 8644280 chr2L 8644366 8644382 7 101 36.5 46.5 41.5 0.2 118 chr2L 8644264 intron Sema-1a + chr2L 8644323 intron Sema-1a + chr2L 8644382 intron Sema-1a + chr2L_7_8640001 chr2L_8640001 RAL-303_100b 467 chr2L 8687057 8687093 chr2L 8687186 8687222 9 129 42.5 32.0 37.2 0.2 165 chr2L 8687057 intergenic Trs23 +,Hnf4 - chr2L 8687140 intergenic Hnf4 -,Trs23 + chr2L 8687222 intergenic Hnf4 -,Trs23 + chr2L_9_8685001 chr2L_8685001 RAL-303_100b 468 chr2L 8698300 8698346 chr2L 8698464 8698510 17 163 51.5 39.5 45.5 0.4 210 chr2L 8698300 intron Hnf4 - chr2L 8698405 intron Hnf4 - chr2L 8698510 intron Hnf4 - chr2L_17_8695001 chr2L_8695001 RAL-303_100b 469 chr2L 8723091 8723144 chr2L 8731493 8731546 Tirant 47 8399 10.5 18.0 14.2 3.1 8455 chr2L 8723091 intron raw - chr2L 8727318 intron raw - chr2L 8731546 intron raw - chr2L_47_8725001 chr2L_8725001 RAL-303_100b 470 chr2L 8772766 8772818 chr2L 8772876 8772930 12 111 21.5 16.5 19.0 0.6 164 chr2L 8772766 intergenic CG9466 -,CG9465 - chr2L 8772848 intergenic CG9466 - chr2L 8772930 intergenic CG9466 - chr2L_12_8770001 chr2L_8770001 RAL-303_100b 471 chr2L 8789285 8789297 chr2L 8789386 8789388 5 99 60.5 31.0 45.8 0.1 103 chr2L 8789285 intergenic not near genes chr2L 8789336 intergenic not near genes chr2L 8789388 intergenic not near genes chr2L_5_8785001 chr2L_8785001 RAL-303_100b 472 chr2L 8789298 8789339 chr2L 8789382 8789413 22 92 40.5 33.5 37.0 0.6 115 chr2L 8789298 intergenic not near genes chr2L 8789356 intergenic not near genes chr2L 8789413 intergenic not near genes chr2L_22_8785001 chr2L_8785001 RAL-303_100b 473 chr2L 8797745 8797780 chr2L 8797888 8797926 7 143 26.0 22.0 24.0 0.3 181 chr2L 8797745 intergenic not near genes chr2L 8797836 intergenic not near genes chr2L 8797926 intergenic not near genes chr2L_7_8795001 chr2L_8795001 RAL-303_100b 474 chr2L 8813840 8813857 chr2L 8813942 8813959 6 100 36.5 50.0 43.2 0.1 119 chr2L 8813840 intergenic not near genes chr2L 8813900 intergenic not near genes chr2L 8813959 intergenic not near genes chr2L_6_8810001 chr2L_8810001 RAL-303_100b 475 chr2L 8820921 8820953 chr2L 8821014 8821057 15 102 33.5 40.0 36.8 0.4 136 chr2L 8820921 intergenic not near genes chr2L 8820989 intergenic not near genes chr2L 8821057 intergenic not near genes chr2L_15_8820001 chr2L_8820001 RAL-303_100b 476 chr2L 8876595 8876621 chr2L 8876732 8876758 6 138 86.0 71.0 78.5 0.1 163 chr2L 8876595 intergenic not near genes chr2L 8876676 intergenic not near genes chr2L 8876758 intergenic not near genes chr2L_6_8875001 chr2L_8875001 RAL-303_100b 477 chr2L 8876593 8876651 chr2L 8876759 8876788 15 141 80.0 61.0 70.5 0.2 195 chr2L 8876593 intergenic not near genes chr2L 8876690 intergenic not near genes chr2L 8876788 intergenic not near genes chr2L_15_8875001 chr2L_8875001 RAL-303_100b 478 chr2L 8877654 8877664 chr2L 8877757 8877762 6 102 46.5 51.0 48.8 0.1 108 chr2L 8877654 intergenic not near genes chr2L 8877708 intergenic not near genes chr2L 8877762 intergenic not near genes chr2L_6_8875001 chr2L_8875001 RAL-303_100b 479 chr2L 8886662 8886664 chr2L 8886769 8886776 4 110 23.0 16.5 19.8 0.2 114 chr2L 8886662 intergenic CR44415 - chr2L 8886719 intergenic CR44415 - chr2L 8886776 intergenic CR44415 - chr2L_4_8885001 chr2L_8885001 RAL-303_100b 480 chr2L 8886665 8886684 chr2L 8886766 8886796 16 107 18.5 15.0 16.8 0.9 131 chr2L 8886665 intergenic CR44415 - chr2L 8886730 intergenic CR44415 - chr2L 8886796 intergenic CR44415 - chr2L_16_8885001 chr2L_8885001 RAL-303_100b 481 chr2L 8886685 8886708 chr2L 8886762 8886818 18 106 10.5 12.0 11.2 1.5 133 chr2L 8886685 intergenic CR44415 - chr2L 8886752 intergenic CR44415 - chr2L 8886818 3` UTR CR44415 - chr2L_18_8885001 chr2L_8885001 RAL-303_100b 482 chr2L 8891849 8891905 chr2L 8891952 8892009 16 103 5.0 0.5 2.8 4.2 160 chr2L 8891849 exon CG42713 + chr2L 8891929 3` UTR CG42713 + chr2L 8892009 3` UTR CG42713 + chr2L_16_8890001 chr2L_8890001 RAL-303_100b 483 chr2L 8895477 8895487 chr2L 8895583 8895593 6 106 31.5 64.0 47.8 0.1 116 chr2L 8895477 intergenic not near genes chr2L 8895535 intergenic not near genes chr2L 8895593 intergenic not near genes chr2L_6_8895001 chr2L_8895001 RAL-303_100b 484 chr2L 8909905 8909948 chr2L 8910167 8910210 18 260 25.0 37.0 31.0 0.6 305 chr2L 8909905 intron CG34398 + chr2L 8910058 intron CG34398 + chr2L 8910210 intron CG34398 + chr2L_18_8910001 chr2L_8910001 RAL-303_100b 485 chr2L 8910759 8910782 chr2L 8911079 8911095 5 316 48.0 47.0 47.5 0.1 336 chr2L 8910759 intron CG34398 + chr2L 8910927 intron CG34398 + chr2L 8911095 intron CG34398 + chr2L_5_8910001 chr2L_8910001 RAL-303_100b 486 chr2L 8910786 8910801 chr2L 8911066 8911121 13 301 43.5 47.0 45.2 0.3 335 chr2L 8910786 intron CG34398 + chr2L 8910954 intron CG34398 + chr2L 8911121 intron CG34398 + chr2L_13_8910001 chr2L_8910001 RAL-303_100b 487 chr2L 8946701 8946705 chr2L 8946830 8946839 6 133 36.5 26.5 31.5 0.2 138 chr2L 8946701 intron C1GalTA - chr2L 8946770 intron C1GalTA - chr2L 8946839 intron C1GalTA - chr2L_6_8945001 chr2L_8945001 RAL-303_100b 488 chr2L 8946708 8946737 chr2L 8946813 8946871 24 131 18.0 14.0 16.0 1.4 163 chr2L 8946708 intron C1GalTA - chr2L 8946790 intron C1GalTA - chr2L 8946871 intron C1GalTA - chr2L_24_8945001 chr2L_8945001 RAL-303_100b 489 chr2L 8959276 8959329 chr2L 8959379 8959431 23 102 36.0 35.0 35.5 0.6 155 chr2L 8959276 3` UTR CG9525 - chr2L 8959354 3` UTR CG9525 - chr2L 8959431 3` UTR CG9525 - chr2L_23_8955001 chr2L_8955001 RAL-303_100b 490 chr2L 9000257 9000313 chr2L 9007792 9007846 roo 41 7532 12.0 0.5 6.2 5.7 7589 chr2L 9000257 intergenic Try29F + chr2L 9004052 intergenic not near genes chr2L 9007846 intergenic not near genes chr2L_41_9000001 chr2L_9000001 RAL-303_100b 491 chr2L 9025805 9025851 chr2L 9025905 9025955 26 105 58.5 60.5 59.5 0.4 150 chr2L 9025805 intron,3` UTR CG9582 -,CR44352 - chr2L 9025880 intron,3` UTR CG9582 -,CR44352 - chr2L 9025955 intron,3` UTR CG9582 -,CR44352 - chr2L_26_9025001 chr2L_9025001 RAL-303_100b 492 chr2L 9040014 9040057 chr2L 9040121 9040169 13 111 46.5 36.0 41.2 0.3 155 chr2L 9040014 intergenic not near genes chr2L 9040092 intergenic not near genes chr2L 9040169 intergenic not near genes chr2L_13_9040001 chr2L_9040001 RAL-303_100b 493 chr2L 9049385 9049393 chr2L 9049484 9049498 6 104 54.0 40.0 47.0 0.1 113 chr2L 9049385 intergenic not near genes chr2L 9049442 intergenic not near genes chr2L 9049498 intergenic not near genes chr2L_6_9045001 chr2L_9045001 RAL-303_100b 494 chr2L 9049394 9049430 chr2L 9049479 9049535 13 102 47.0 42.0 44.5 0.3 141 chr2L 9049394 intergenic not near genes chr2L 9049464 intergenic not near genes chr2L 9049535 intergenic not near genes chr2L_13_9045001 chr2L_9045001 RAL-303_100b 495 chr2L 9068151 9068207 chr2L 9068253 9068309 12 101 25.0 31.0 28.0 0.4 158 chr2L 9068151 intron CG31708 - chr2L 9068230 intron CG31708 - chr2L 9068309 intron CG31708 - chr2L_12_9065001 chr2L_9065001 RAL-303_100b 496 chr2L 9084336 9084340 chr2L 16217660 16217660 24 7133321 63.5 70.0 66.8 0.4 7133324 chr2L 9084336 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_24_12650001 chr2L_12650001 RAL-303_100b 497 chr2L 9085941 9085942 chr2L 9086030 9086044 5 103 0.0 15.5 7.8 0.6 103 chr2L 9085941 intron Toll-4 + chr2L 9085992 intron Toll-4 + chr2L 9086044 intron Toll-4 + chr2L_5_9085001 chr2L_9085001 RAL-303_100b 498 chr2L 9095547 9095604 chr2L 9095659 9095716 51 109 11.5 13.0 12.2 3.9 169 chr2L 9095547 intergenic not near genes chr2L 9095632 intergenic not near genes chr2L 9095716 intergenic not near genes chr2L_51_9095001 chr2L_9095001 RAL-303_100b 499 chr2L 9113775 9113810 chr2L 9113910 9113943 26 134 22.5 21.5 22.0 1.1 168 chr2L 9113775 intergenic Or30a + chr2L 9113859 intergenic not near genes chr2L 9113943 intergenic not near genes chr2L_26_9110001 chr2L_9110001 RAL-303_100b 500 chr2L 9158768 9158814 chr2L 9158890 9158941 17 121 14.5 0.0 7.2 2.1 173 chr2L 9158768 intron CG32982 + chr2L 9158854 intron CG32982 + chr2L 9158941 intron CG32982 + chr2L_17_9155001 chr2L_9155001 RAL-303_100b 501 chr2L 9164197 9164223 chr2L 9164299 9164320 5 98 33.0 39.0 36.0 0.1 123 chr2L 9164197 intergenic CG13108 +,CG32982 + chr2L 9164258 5` UTR CG13108 + chr2L 9164320 5` UTR CG13108 + chr2L_5_9160001 chr2L_9160001 RAL-303_100b 502 chr2L 9214140 9214196 chr2L 9214241 9214281 34 98 46.5 42.5 44.5 0.7 141 chr2L 9214140 intron tai + chr2L 9214210 intron tai + chr2L 9214281 intron tai + chr2L_34_9210001 chr2L_9210001 RAL-303_100b 503 chr2L 9217945 9217979 chr2L 9222757 9222791 Doc 27 4811 20.5 13.5 17.0 1.5 4846 chr2L 9217945 intron tai + chr2L 9220368 intron tai + chr2L 9222791 intron tai + chr2L_27_9220001 chr2L_9220001 RAL-303_100b 504 chr2L 9217980 9218003 chr2L 9222754 9222823 Doc 18 4811 10.5 13.0 11.8 1.4 4843 chr2L 9217980 intron tai + chr2L 9220402 intron tai + chr2L 9222823 intron tai + chr2L_18_9220001 chr2L_9220001 RAL-303_100b 505 chr2L 9225392 9225431 chr2L 9225491 9225536 14 97 24.5 31.5 28.0 0.5 144 chr2L 9225392 intron tai + chr2L 9225464 intron tai + chr2L 9225536 intron tai + chr2L_14_9225001 chr2L_9225001 RAL-303_100b 506 chr2L 9227216 9227241 chr2L 9227311 9227322 7 97 16.5 13.5 15.0 0.4 106 chr2L 9227216 intron tai + chr2L 9227269 intron tai + chr2L 9227322 intron tai + chr2L_7_9225001 chr2L_9225001 RAL-303_100b 507 chr2L 9234889 9234929 chr2L 9234994 9235036 21 107 7.5 23.0 15.2 1.3 147 chr2L 9234889 intron tai + chr2L 9234962 intron tai + chr2L 9235036 intron tai + chr2L_21_9230001 chr2L_9230001 RAL-303_100b 508 chr2L 9247199 9247234 chr2L 9247305 9247340 6 105 14.5 21.0 17.8 0.3 141 chr2L 9247199 3` UTR tai + chr2L 9247270 3` UTR tai + chr2L 9247340 3` UTR tai + chr2L_6_9245001 chr2L_9245001 RAL-303_100b 509 chr2L 9279969 9280024 chr2L 9280088 9280136 8 117 9.5 11.5 10.5 0.7 167 chr2L 9279969 intron Ggamma30A + chr2L 9280052 intron Ggamma30A + chr2L 9280136 intron Ggamma30A + chr2L_8_9280001 chr2L_9280001 RAL-303_100b 510 chr2L 9285003 9285035 chr2L 9285102 9285118 13 96 45.5 38.5 42.0 0.3 115 chr2L 9285003 intron Ggamma30A + chr2L 9285060 intron Ggamma30A + chr2L 9285118 intron Ggamma30A + chr2L_13_9285001 chr2L_9285001 RAL-303_100b 511 chr2L 9285037 9285046 chr2L 9285100 9285127 5 76 43.0 39.0 41.0 0.1 90 chr2L 9285037 intron Ggamma30A + chr2L 9285082 intron Ggamma30A + chr2L 9285127 intron Ggamma30A + chr2L_5_9285001 chr2L_9285001 RAL-303_100b 512 chr2L 9287297 9287335 chr2L 9287419 9287440 21 120 43.5 41.0 42.2 0.5 143 chr2L 9287297 intron Ggamma30A + chr2L 9287368 intron Ggamma30A + chr2L 9287440 intron Ggamma30A + chr2L_21_9285001 chr2L_9285001 RAL-303_100b 513 chr2L 9297353 9297404 chr2L 9297455 9297506 50 101 14.0 13.5 13.8 3.4 153 chr2L 9297353 3` UTR Ggamma30A + chr2L 9297430 3` UTR Ggamma30A + chr2L 9297506 3` UTR Ggamma30A + chr2L_50_9295001 chr2L_9295001 RAL-303_100b 514 chr2L 9300674 9300686 chr2L 9300784 9300796 14 110 23.0 0.0 11.5 1.1 122 chr2L 9300674 3` UTR Ggamma30A + chr2L 9300735 3` UTR Ggamma30A + chr2L 9300796 3` UTR Ggamma30A + chr2L_14_9300001 chr2L_9300001 RAL-303_100b 515 chr2L 9304323 9304519 chr2L 9304432 9304623 50 104 13.5 19.0 16.2 2.9 300 chr2L 9304323 intergenic CR42844 - chr2L 9304473 3` UTR CR42844 - chr2L 9304623 3` UTR CR42844 - chr2L_50_9300001 chr2L_9300001 RAL-303_100b 516 chr2L 9317400 9317561 chr2L 9317543 9317817 17 165 18.5 26.0 22.2 0.7 417 chr2L 9317400 intergenic not near genes chr2L 9317608 intergenic not near genes chr2L 9317817 intergenic not near genes chr2L_17_9315001 chr2L_9315001 RAL-303_100b 517 chr2L 9321705 9321754 chr2L 9321806 9321855 26 100 30.0 36.5 33.2 0.8 150 chr2L 9321705 intergenic not near genes chr2L 9321780 intergenic not near genes chr2L 9321855 intergenic not near genes chr2L_26_9320001 chr2L_9320001 RAL-303_100b 518 chr2L 9337892 9337907 chr2L 9337994 9338009 7 102 41.0 33.0 37.0 0.2 117 chr2L 9337892 intron Eaat1 + chr2L 9337950 intron Eaat1 + chr2L 9338009 intron Eaat1 + chr2L_7_9335001 chr2L_9335001 RAL-303_100b 519 chr2L 9346718 9346762 chr2L 9346832 9346871 8 113 24.5 0.0 12.2 0.6 153 chr2L 9346718 intergenic not near genes chr2L 9346794 intergenic not near genes chr2L 9346871 intergenic not near genes chr2L_8_9345001 chr2L_9345001 RAL-303_100b 520 chr2L 9364285 9364331 chr2L 9364409 9364448 8 114 20.5 50.0 35.2 0.2 163 chr2L 9364285 intergenic CR43404 + chr2L 9364366 intron CR43404 + chr2L 9364448 intron CR43404 + chr2L_8_9360001 chr2L_9360001 RAL-303_100b 521 chr2L 9380218 9380254 chr2L 9380338 9380359 36 119 16.5 10.0 13.2 2.5 141 chr2L 9380218 exon Shawl - chr2L 9380288 intron Shawl - chr2L 9380359 intron Shawl - chr2L_36_9380001 chr2L_9380001 RAL-303_100b 522 chr2L 9387227 9387278 chr2L 9387350 9387401 43 121 13.5 7.0 10.2 3.8 174 chr2L 9387227 intron Shawl - chr2L 9387314 intron Shawl - chr2L 9387401 intron,5` UTR Shawl -,Aldh + chr2L_43_9385001 chr2L_9385001 RAL-303_100b 523 chr2L 9393472 9393528 chr2L 9396464 9396520 jockey 57 2991 9.5 18.5 14.0 3.8 3048 chr2L 9393472 intron Shawl - chr2L 9394996 intron Shawl - chr2L 9396520 intron Shawl - chr2L_57_9390001 chr2L_9390001 RAL-303_100b 524 chr2L 9407883 9407906 chr2L 9407990 9408011 19 106 33.0 43.0 38.0 0.5 128 chr2L 9407883 intron Shawl - chr2L 9407947 intron Shawl - chr2L 9408011 intron Shawl - chr2L_19_9405001 chr2L_9405001 RAL-303_100b 525 chr2L 9443060 9443086 chr2L 9443173 9443225 6 130 25.5 28.0 26.8 0.2 165 chr2L 9443060 intron numb + chr2L 9443142 intron numb + chr2L 9443225 intron numb + chr2L_6_9440001 chr2L_9440001 RAL-303_100b 526 chr2L 9448910 9448929 chr2L 9449022 9449031 7 110 0.0 28.0 14.0 0.5 121 chr2L 9448910 intron numb + chr2L 9448970 intron numb + chr2L 9449031 intron numb + chr2L_7_9445001 chr2L_9445001 RAL-303_100b 527 chr2L 9451025 9451066 chr2L 9451153 9451185 14 126 22.0 13.0 17.5 0.8 160 chr2L 9451025 intron numb + chr2L 9451105 intron numb + chr2L 9451185 intron numb + chr2L_14_9450001 chr2L_9450001 RAL-303_100b 528 chr2L 9454951 9455007 chr2L 9455078 9455134 28 126 41.0 42.5 41.8 0.7 183 chr2L 9454951 intron numb + chr2L 9455042 intron numb + chr2L 9455134 intron numb + chr2L_28_9455001 chr2L_9455001 RAL-303_100b 529 chr2L 9460730 9460785 chr2L 9460841 9460904 14 112 21.5 12.0 16.8 0.8 174 chr2L 9460730 exon numb + chr2L 9460817 intron numb + chr2L 9460904 intron numb + chr2L_14_9460001 chr2L_9460001 RAL-303_100b 530 chr2L 9474761 9474804 chr2L 9474880 9474921 11 115 32.5 37.5 35.0 0.3 160 chr2L 9474761 intergenic not near genes chr2L 9474841 intergenic not near genes chr2L 9474921 intergenic not near genes chr2L_11_9470001 chr2L_9470001 RAL-303_100b 531 chr2L 9488560 9488578 chr2L 9488655 9488658 5 95 35.5 36.0 35.8 0.1 98 chr2L 9488560 intergenic not near genes chr2L 9488609 intergenic not near genes chr2L 9488658 intergenic not near genes chr2L_5_9485001 chr2L_9485001 RAL-303_100b 532 chr2L 9490496 9490546 chr2L 9490601 9490651 26 103 19.0 19.5 19.2 1.3 155 chr2L 9490496 intergenic not near genes chr2L 9490574 intergenic not near genes chr2L 9490651 intergenic not near genes chr2L_26_9490001 chr2L_9490001 RAL-303_100b 533 chr2L 9506338 9506368 chr2L 9506445 9506475 8 107 24.5 16.0 20.2 0.4 137 chr2L 9506338 intron CG33298 + chr2L 9506406 intron CG33298 + chr2L 9506475 intron CG33298 + chr2L_8_9505001 chr2L_9505001 RAL-303_100b 534 chr2L 9532009 9532039 chr2L 9532119 9532149 18 109 52.0 44.0 48.0 0.4 140 chr2L 9532009 intron Oatp30B + chr2L 9532079 intron Oatp30B + chr2L 9532149 intron Oatp30B + chr2L_18_9530001 chr2L_9530001 RAL-303_100b 535 chr2L 9532043 9532058 chr2L 9532117 9532147 9 100 48.0 44.0 46.0 0.2 104 chr2L 9532043 intron Oatp30B + chr2L 9532095 intron Oatp30B + chr2L 9532147 intron Oatp30B + chr2L_9_9530001 chr2L_9530001 RAL-303_100b 536 chr2L 9539980 9540025 chr2L 9540095 9540130 21 113 25.0 28.5 26.8 0.8 150 chr2L 9539980 3` UTR Oatp30B + chr2L 9540055 3` UTR Oatp30B + chr2L 9540130 intergenic Oatp30B +,CG17855 + chr2L_21_9540001 chr2L_9540001 RAL-303_100b 537 chr2L 9614710 9614767 chr2L 9614859 9614921 22 148 43.5 43.5 43.5 0.5 211 chr2L 9614710 intron Trx-2 + chr2L 9614816 intron Trx-2 + chr2L 9614921 intron Trx-2 + chr2L_22_9610001 chr2L_9610001 RAL-303_100b 538 chr2L 9618868 9618911 chr2L 9618970 9619013 32 101 31.0 20.0 25.5 1.2 145 chr2L 9618868 intron GlcAT-S + chr2L 9618940 intron GlcAT-S + chr2L 9619013 intron GlcAT-S + chr2L_32_9615001 chr2L_9615001 RAL-303_100b 539 chr2L 9619480 9619521 chr2L 9619842 9619883 16 361 32.5 49.0 40.8 0.4 403 chr2L 9619480 intron GlcAT-S + chr2L 9619682 intron GlcAT-S + chr2L 9619883 intron GlcAT-S + chr2L_16_9615001 chr2L_9615001 RAL-303_100b 540 chr2L 9712676 9712733 chr2L 9712797 9712844 46 118 46.0 44.0 45.0 1.0 168 chr2L 9712676 3` UTR Nckx30C - chr2L 9712760 3` UTR Nckx30C - chr2L 9712844 3` UTR Nckx30C - chr2L_46_9710001 chr2L_9710001 RAL-303_100b 541 chr2L 9716748 9716766 chr2L 9716855 9716873 9 107 43.5 59.5 51.5 0.2 125 chr2L 9716748 3` UTR Nckx30C - chr2L 9716810 3` UTR Nckx30C - chr2L 9716873 3` UTR Nckx30C - chr2L_9_9715001 chr2L_9715001 RAL-303_100b 542 chr2L 9719760 9719780 chr2L 9719868 9719888 9 107 0.0 13.0 6.5 1.2 128 chr2L 9719760 intron Nckx30C - chr2L 9719824 intron Nckx30C - chr2L 9719888 intron Nckx30C - chr2L_9_9715001 chr2L_9715001 RAL-303_100b 543 chr2L 9767883 9767890 chr2L 9767986 9767994 4 104 50.5 53.5 52.0 0.1 111 chr2L 9767883 intron,exon ppk18 -,CG4017 + chr2L 9767938 intron,exon ppk18 -,CG4017 + chr2L 9767994 intron,exon ppk18 -,CG4017 + chr2L_4_9765001 chr2L_9765001 RAL-303_100b 544 chr2L 9767892 9767938 chr2L 9767980 9768024 25 99 48.0 51.5 49.8 0.5 132 chr2L 9767892 intron,exon ppk18 -,CG4017 + chr2L 9767958 intron,exon ppk18 -,CG4017 + chr2L 9768024 intron,exon ppk18 -,CG4017 + chr2L_25_9765001 chr2L_9765001 RAL-303_100b 545 chr2L 9770745 9770761 chr2L 9770875 9770891 9 129 46.0 55.0 50.5 0.2 146 chr2L 9770745 intron ppk18 - chr2L 9770818 intron ppk18 - chr2L 9770891 exon ppk18 - chr2L_9_9770001 chr2L_9770001 RAL-303_100b 546 chr2L 9775961 9775968 chr2L 9776068 9776075 5 107 13.0 38.0 25.5 0.2 114 chr2L 9775961 intergenic not near genes chr2L 9776018 intergenic not near genes chr2L 9776075 intergenic not near genes chr2L_5_9775001 chr2L_9775001 RAL-303_100b 547 chr2L 9775972 9776008 chr2L 9776063 9776115 21 106 22.0 37.0 29.5 0.7 143 chr2L 9775972 intergenic not near genes chr2L 9776044 intergenic not near genes chr2L 9776115 intergenic not near genes chr2L_21_9775001 chr2L_9775001 RAL-303_100b 548 chr2L 9821563 9821612 chr2L 9822017 9822066 25 452 33.5 43.5 38.5 0.6 503 chr2L 9821563 intron nAChRalpha6 - chr2L 9821814 intron nAChRalpha6 - chr2L 9822066 intron nAChRalpha6 - chr2L_25_9820001 chr2L_9820001 RAL-303_100b 549 chr2L 9837408 9837442 chr2L 9837511 9837545 13 102 2.5 8.0 5.2 2.1 137 chr2L 9837408 intron nAChRalpha6 - chr2L 9837476 intron nAChRalpha6 - chr2L 9837545 intron nAChRalpha6 - chr2L_13_9835001 chr2L_9835001 RAL-303_100b 550 chr2L 9861589 9861646 chr2L 9861801 9861858 32 209 45.5 48.5 47.0 0.7 269 chr2L 9861589 intron nAChRalpha6 - chr2L 9861724 intron nAChRalpha6 - chr2L 9861858 intron nAChRalpha6 - chr2L_32_9860001 chr2L_9860001 RAL-303_100b 551 chr2L 9871499 9871561 chr2L 9871608 9871675 28 112 5.0 2.5 3.8 5.8 176 chr2L 9871499 intron nAChRalpha6 - chr2L 9871587 intron nAChRalpha6 - chr2L 9871675 intron nAChRalpha6 - chr2L_28_9870001 chr2L_9870001 RAL-303_100b 552 chr2L 9948023 9948028 chr2L 9948128 9948133 7 105 22.0 38.5 30.2 0.2 110 chr2L 9948023 intergenic CG5853 - chr2L 9948078 intergenic CG5853 - chr2L 9948133 intergenic CG5853 - chr2L_7_9945001 chr2L_9945001 RAL-303_100b 553 chr2L 9973702 9973736 chr2L 9980846 9980880 HMS-Beagle 35 7142 30.0 26.5 28.2 1.2 7178 chr2L 9973702 intergenic not near genes chr2L 9977291 intergenic not near genes chr2L 9980880 intergenic not near genes chr2L_35_9975001 chr2L_9975001 RAL-303_100b 554 chr2L 9973738 9973757 chr2L 9980845 9980899 HMS-Beagle 27 7133 16.5 25.5 21.0 1.2 7161 chr2L 9973738 intergenic not near genes chr2L 9977318 intergenic not near genes chr2L 9980899 intergenic not near genes chr2L_27_9975001 chr2L_9975001 RAL-303_100b 555 chr2L 9982195 9982196 chr2L 9982323 9982324 4 128 32.5 47.5 40.0 0.1 129 chr2L 9982195 intergenic not near genes chr2L 9982260 intergenic not near genes chr2L 9982324 intergenic not near genes chr2L_4_9980001 chr2L_9980001 RAL-303_100b 556 chr2L 9982199 9982232 chr2L 9982315 9982360 12 126 35.0 46.5 40.8 0.3 161 chr2L 9982199 intergenic not near genes chr2L 9982280 intergenic not near genes chr2L 9982360 intergenic not near genes chr2L_12_9980001 chr2L_9980001 RAL-303_100b 557 chr2L 10005081 10005129 chr2L 10005199 10005247 31 117 53.0 54.5 53.8 0.6 166 chr2L 10005081 intron CG4747 + chr2L 10005164 intron CG4747 + chr2L 10005247 intron CG4747 + chr2L_31_10005001 chr2L_10005001 RAL-303_100b 558 chr2L 10051700 10051753 chr2L 10051810 10051863 51 103 12.5 14.0 13.2 3.6 163 chr2L 10051700 5` UTR CR44874 + chr2L 10051782 5` UTR CR44874 + chr2L 10051863 5` UTR CR44874 + chr2L_51_10050001 chr2L_10050001 RAL-303_100b 559 chr2L 10087450 10087488 chr2L 10087552 10087590 20 101 46.0 44.5 45.2 0.4 140 chr2L 10087450 intron CG44153 - chr2L 10087520 intron CG44153 - chr2L 10087590 intron CG44153 - chr2L_20_10085001 chr2L_10085001 RAL-303_100b 560 chr2L 10094272 10094277 chr2L 10094472 10094477 4 200 50.0 46.5 48.2 0.1 205 chr2L 10094272 intron CG44153 - chr2L 10094374 intron CG44153 - chr2L 10094477 intron CG44153 - chr2L_4_10090001 chr2L_10090001 RAL-303_100b 561 chr2L 10094283 10094322 chr2L 10094468 10094522 22 193 47.0 45.0 46.0 0.5 239 chr2L 10094283 intron CG44153 - chr2L 10094402 intron CG44153 - chr2L 10094522 intron CG44153 - chr2L_22_10090001 chr2L_10090001 RAL-303_100b 562 chr2L 10095610 10095617 chr2L 10095715 10095722 5 104 51.0 41.0 46.0 0.1 112 chr2L 10095610 intron CG44153 - chr2L 10095666 intron CG44153 - chr2L 10095722 intron CG44153 - chr2L_5_10095001 chr2L_10095001 RAL-303_100b 563 chr2L 10095619 10095663 chr2L 10095714 10095768 31 103 40.5 41.5 41.0 0.7 149 chr2L 10095619 intron CG44153 - chr2L 10095694 intron CG44153 - chr2L 10095768 intron CG44153 - chr2L_31_10095001 chr2L_10095001 RAL-303_100b 564 chr2L 10105274 10105313 chr2L 10105363 10105414 50 98 22.5 9.0 15.8 3.0 140 chr2L 10105274 intron,intron CG44153 -,CG34109 + chr2L 10105344 intron,intron CG44153 -,CG34109 + chr2L 10105414 intron,intron CG44153 -,CG34109 + chr2L_50_10105001 chr2L_10105001 RAL-303_100b 565 chr2L 10108957 10109006 chr2L 10109064 10109089 26 105 51.0 44.0 47.5 0.5 132 chr2L 10108957 intron,intron CG44153 -,CG34109 + chr2L 10109023 intron,intron CG44153 -,CG34109 + chr2L 10109089 intron,intron CG44153 -,CG34109 + chr2L_26_10105001 chr2L_10105001 RAL-303_100b 566 chr2L 10138169 10138194 chr2L 10143435 10143459 Rt1c 16 5266 14.0 35.5 24.8 0.6 5290 chr2L 10138169 intron CG44153 - chr2L 10140814 intron CG44153 - chr2L 10143459 intron CG44153 - chr2L_16_10140001 chr2L_10140001 RAL-303_100b 567 chr2L 10153187 10153235 chr2L 10153280 10153298 49 97 11.0 16.0 13.5 3.4 111 chr2L 10153187 intron,exon CG44153 -,CG4839 + chr2L 10153242 intron,intron CG44153 -,CG4839 + chr2L 10153298 intron,intron CG44153 -,CG4839 + chr2L_49_10150001 chr2L_10150001 RAL-303_100b 568 chr2L 10156295 10156352 chr2L 10163790 10163842 blood 40 7492 16.0 16.0 16.0 2.4 7547 chr2L 10156295 intron,3` UTR CG44153 -,CG4839 + chr2L 10160068 intron CG44153 - chr2L 10163842 intron CG44153 - chr2L_40_10160001 chr2L_10160001 RAL-303_100b 569 chr2L 10176023 10176024 chr2L 16071771 16071771 16 5895747 72.5 71.5 72.0 0.2 5895748 chr2L 10176023 intron CG44153 - chr2L 13123897 intergenic not near genes chr2L 16071771 intron beat-Ia + chr2L_16_13120001 chr2L_13120001 RAL-303_100b 570 chr2L 10209823 10209849 chr2L 10209925 10209946 19 101 19.5 0.0 9.8 1.8 123 chr2L 10209823 intergenic CG5727 -,CR44845 +,CG5731 - chr2L 10209884 3` UTR CG5727 - chr2L 10209946 3` UTR CG5727 - chr2L_19_10205001 chr2L_10205001 RAL-303_100b 571 chr2L 10227498 10227555 chr2L 10227599 10227656 34 100 41.5 38.0 39.8 0.8 158 chr2L 10227498 intergenic CG5694 - chr2L 10227577 intergenic CG5694 - chr2L 10227656 intergenic CG5694 - chr2L_34_10225001 chr2L_10225001 RAL-303_100b 572 chr2L 10281649 10281687 chr2L 10281769 10281818 8 125 0.0 9.0 4.5 1.5 169 chr2L 10281649 intergenic CG5604 - chr2L 10281734 intergenic CG5604 - chr2L 10281818 intergenic CG5604 - chr2L_8_10280001 chr2L_10280001 RAL-303_100b 573 chr2L 10294142 10294194 chr2L 10294242 10294298 24 104 6.5 3.0 4.8 4.1 156 chr2L 10294142 intron Hand - chr2L 10294220 intron Hand - chr2L 10294298 intron Hand - chr2L_24_10290001 chr2L_10290001 RAL-303_100b 574 chr2L 10364003 10364013 chr2L 10364106 10364111 4 102 0.5 0.5 0.5 2.7 108 chr2L 10364003 3` UTR pim + chr2L 10364057 3` UTR pim + chr2L 10364111 intergenic pim +,lft + chr2L_4_10360001 chr2L_10360001 RAL-303_100b 575 chr2L 10373168 10373216 chr2L 10373274 10373322 11 106 4.0 3.5 3.8 2.3 154 chr2L 10373168 intron rho-5 - chr2L 10373245 intron rho-5 - chr2L 10373322 intron rho-5 - chr2L_11_10370001 chr2L_10370001 RAL-303_100b 576 chr2L 10407745 10407775 chr2L 10407843 10407881 10 105 20.5 31.0 25.8 0.4 136 chr2L 10407745 intron Ir31a + chr2L 10407813 intron Ir31a + chr2L 10407881 exon Ir31a + chr2L_10_10405001 chr2L_10405001 RAL-303_100b 577 chr2L 10421266 10421315 chr2L 10421380 10421387 18 98 25.0 13.0 19.0 0.9 121 chr2L 10421266 exon pie - chr2L 10421326 exon pie - chr2L 10421387 exon pie - chr2L_18_10420001 chr2L_10420001 RAL-303_100b 578 chr2L 10447074 10447088 chr2L 10447208 10447223 7 135 3.5 29.0 16.2 0.4 149 chr2L 10447074 intron loh + chr2L 10447148 intron loh + chr2L 10447223 intron loh + chr2L_7_10445001 chr2L_10445001 RAL-303_100b 579 chr2L 10456627 10456634 chr2L 10456732 10456739 7 105 0.5 13.5 7.0 0.9 112 chr2L 10456627 intron CG5322 - chr2L 10456683 intron CG5322 - chr2L 10456739 intron CG5322 - chr2L_7_10455001 chr2L_10455001 RAL-303_100b 580 chr2L 10458080 10458102 chr2L 10458366 10458388 7 286 15.0 21.5 18.2 0.4 308 chr2L 10458080 intron LM408 + chr2L 10458234 intron LM408 + chr2L 10458388 intron LM408 + chr2L_7_10455001 chr2L_10455001 RAL-303_100b 581 chr2L 10458196 10458213 chr2L 10458317 10458328 8 120 0.0 10.0 5.0 1.3 132 chr2L 10458196 intron LM408 + chr2L 10458262 intron LM408 + chr2L 10458328 intron LM408 + chr2L_8_10455001 chr2L_10455001 RAL-303_100b 582 chr2L 10474366 10474405 chr2L 10474472 10474480 10 102 17.0 14.5 15.8 0.6 114 chr2L 10474366 intergenic RluA-1 - chr2L 10474423 intergenic RluA-1 - chr2L 10474480 intergenic RluA-1 - chr2L_10_10470001 chr2L_10470001 RAL-303_100b 583 chr2L 10480292 10480324 chr2L 10480395 10480427 10 102 47.0 43.0 45.0 0.2 135 chr2L 10480292 intron RluA-2 + chr2L 10480360 intron RluA-2 + chr2L 10480427 intron RluA-2 + chr2L_10_10480001 chr2L_10480001 RAL-303_100b 584 chr2L 10480325 10480336 chr2L 10480393 10480426 8 101 46.5 44.5 45.5 0.2 101 chr2L 10480325 intron RluA-2 + chr2L 10480376 intron RluA-2 + chr2L 10480426 intron RluA-2 + chr2L_8_10480001 chr2L_10480001 RAL-303_100b 585 chr2L 10490250 10490308 chr2L 10490357 10490414 17 104 33.5 31.5 32.5 0.5 164 chr2L 10490250 3` UTR,3` UTR CG6144 +,CG13144 - chr2L 10490332 3` UTR,3` UTR CG6144 +,CG13144 - chr2L 10490414 3` UTR,3` UTR CG6144 +,CG13144 - chr2L_17_10490001 chr2L_10490001 RAL-303_100b 586 chr2L 10495281 10495464 chr2L 10495383 10495575 26 106 38.5 34.5 36.5 0.7 294 chr2L 10495281 intron Myo31DF - chr2L 10495428 intron Myo31DF - chr2L 10495575 intron Myo31DF - chr2L_26_10495001 chr2L_10495001 RAL-303_100b 587 chr2L 10515336 10515388 chr2L 10515454 10515506 47 117 17.0 11.5 14.2 3.1 170 chr2L 10515336 intron,intron CG45083 -,Fatp - chr2L 10515421 intron,intron CG45083 -,Fatp - chr2L 10515506 intron,intron CG45083 -,Fatp - chr2L_47_10515001 chr2L_10515001 RAL-303_100b 588 chr2L 10519495 10519508 chr2L 10519766 10519791 14 280 1.0 12.0 6.5 1.9 296 chr2L 10519495 intergenic Lrr47 + chr2L 10519643 intergenic Lrr47 + chr2L 10519791 intergenic not near genes chr2L_14_10515001 chr2L_10515001 RAL-303_100b 589 chr2L 10521070 10521115 chr2L 10521159 10521198 11 88 35.0 36.0 35.5 0.3 128 chr2L 10521070 intergenic not near genes chr2L 10521134 intergenic not near genes chr2L 10521198 intergenic not near genes chr2L_11_10520001 chr2L_10520001 RAL-303_100b 590 chr2L 10531587 10531645 chr2L 10531704 10531762 25 116 0.5 10.5 5.5 3.8 175 chr2L 10531587 3` UTR Lip4 + chr2L 10531674 3` UTR Lip4 + chr2L 10531762 3` UTR Lip4 + chr2L_25_10530001 chr2L_10530001 RAL-303_100b 591 chr2L 10540846 10540878 chr2L 10540949 10540981 32 102 16.0 7.0 11.5 2.6 135 chr2L 10540846 intergenic not near genes chr2L 10540914 intergenic not near genes chr2L 10540981 intergenic not near genes chr2L_32_10540001 chr2L_10540001 RAL-303_100b 592 chr2L 10560497 10560514 chr2L 10560600 10560617 16 102 56.5 43.0 49.8 0.3 120 chr2L 10560497 intron Trim9 + chr2L 10560557 intron Trim9 + chr2L 10560617 intron Trim9 + chr2L_16_10560001 chr2L_10560001 RAL-303_100b 593 chr2L 10563885 10563946 chr2L 10564003 10564039 21 115 15.5 14.5 15.0 1.3 154 chr2L 10563885 intron Trim9 + chr2L 10563962 intron Trim9 + chr2L 10564039 intron Trim9 + chr2L_21_10560001 chr2L_10560001 RAL-303_100b 594 chr2L 10574544 10574599 chr2L 10574666 10574721 20 121 30.5 35.5 33.0 0.6 177 chr2L 10574544 intron Trim9 + chr2L 10574632 intron Trim9 + chr2L 10574721 intron Trim9 + chr2L_20_10570001 chr2L_10570001 RAL-303_100b 595 chr2L 10592817 10592848 chr2L 10600504 10600535 opus 33 7685 13.0 14.5 13.8 2.2 7718 chr2L 10592817 intron Trim9 + chr2L 10596676 intron Trim9 + chr2L 10600535 intron Trim9 + chr2L_33_10595001 chr2L_10595001 RAL-303_100b 596 chr2L 10592849 10592873 chr2L 10600502 10600560 opus 30 7682 6.0 13.0 9.5 2.9 7711 chr2L 10592849 intron Trim9 + chr2L 10596704 intron Trim9 + chr2L 10600560 intron Trim9 + chr2L_30_10595001 chr2L_10595001 RAL-303_100b 597 chr2L 10604170 10604221 chr2L 10604279 10604325 15 106 22.5 22.5 22.5 0.6 155 chr2L 10604170 intron Trim9 + chr2L 10604248 intron Trim9 + chr2L 10604325 intron Trim9 + chr2L_15_10600001 chr2L_10600001 RAL-303_100b 598 chr2L 10628067 10628126 chr2L 10628181 10628240 21 112 38.0 36.0 37.0 0.6 173 chr2L 10628067 intergenic Trim9 + chr2L 10628154 intergenic Trim9 + chr2L 10628240 intergenic Trim9 + chr2L_21_10625001 chr2L_10625001 RAL-303_100b 599 chr2L 10631184 10631231 chr2L 10631341 10631375 30 152 18.0 0.0 9.0 3.0 191 chr2L 10631184 intron CG7329 - chr2L 10631280 intron CG7329 - chr2L 10631375 intron CG7329 - chr2L_30_10630001 chr2L_10630001 RAL-303_100b 600 chr2L 10640614 10640671 chr2L 10640728 10640785 27 113 45.0 45.0 45.0 0.6 171 chr2L 10640614 exon CG31872 + chr2L 10640700 exon CG31872 + chr2L 10640785 exon CG31872 + chr2L_27_10640001 chr2L_10640001 RAL-303_100b 601 chr2L 10683430 10683478 chr2L 10683524 10683582 17 100 29.0 25.5 27.2 0.6 152 chr2L 10683430 3` UTR CG7299 - chr2L 10683506 3` UTR CG7299 - chr2L 10683582 3` UTR CG7299 - chr2L_17_10680001 chr2L_10680001 RAL-303_100b 602 chr2L 10688530 10688573 chr2L 10688625 10688674 22 100 2.0 12.0 7.0 2.8 144 chr2L 10688530 intergenic CG7294 - chr2L 10688602 intergenic CG7294 - chr2L 10688674 intergenic CG7294 - chr2L_22_10685001 chr2L_10685001 RAL-303_100b 603 chr2L 10698103 10698159 chr2L 10698211 10698265 24 108 39.5 40.0 39.8 0.6 162 chr2L 10698103 5` UTR CR44181 + chr2L 10698184 5` UTR CR44181 + chr2L 10698265 intergenic CR44181 +,CG7300 - chr2L_24_10695001 chr2L_10695001 RAL-303_100b 604 chr2L 10698557 10698592 chr2L 10698665 10698710 10 110 20.0 31.5 25.8 0.4 153 chr2L 10698557 intergenic CR44181 + chr2L 10698634 intergenic CR44181 + chr2L 10698710 intergenic not near genes chr2L_10_10695001 chr2L_10695001 RAL-303_100b 605 chr2L 10704892 10704948 chr2L 10705012 10705066 14 120 41.5 40.0 40.8 0.3 174 chr2L 10704892 intron,exon Lip2 -,CG6415 + chr2L 10704979 intron Lip2 - chr2L 10705066 exon Lip2 - chr2L_14_10700001 chr2L_10700001 RAL-303_100b 606 chr2L 10705443 10705452 chr2L 10705537 10705560 6 105 24.5 28.0 26.2 0.2 117 chr2L 10705443 exon Lip2 - chr2L 10705502 intron Lip2 - chr2L 10705560 intron Lip2 - chr2L_6_10705001 chr2L_10705001 RAL-303_100b 607 chr2L 10705457 10705458 chr2L 10705532 10705556 5 90 23.0 24.5 23.8 0.2 99 chr2L 10705457 exon Lip2 - chr2L 10705506 intron Lip2 - chr2L 10705556 intron Lip2 - chr2L_5_10705001 chr2L_10705001 RAL-303_100b 608 chr2L 10705459 10705479 chr2L 10705531 10705587 17 91 19.0 24.0 21.5 0.8 128 chr2L 10705459 exon Lip2 - chr2L 10705523 intron Lip2 - chr2L 10705587 intron Lip2 - chr2L_17_10705001 chr2L_10705001 RAL-303_100b 609 chr2L 10723520 10723541 chr2L 10723638 10723660 19 119 10.0 7.0 8.5 2.0 140 chr2L 10723520 intergenic not near genes chr2L 10723590 intergenic not near genes chr2L 10723660 intergenic not near genes chr2L_19_10720001 chr2L_10720001 RAL-303_100b 610 chr2L 10787960 10788030 chr2L 10788078 10788131 8 100 42.0 47.0 44.5 0.2 171 chr2L 10787960 intron CG31869 - chr2L 10788046 intron CG31869 - chr2L 10788131 intron CG31869 - chr2L_8_10785001 chr2L_10785001 RAL-303_100b 611 chr2L 10791834 10791893 chr2L 10791939 10791998 21 101 40.5 33.5 37.0 0.6 164 chr2L 10791834 intron CG31869 - chr2L 10791916 intron CG31869 - chr2L 10791998 intron CG31869 - chr2L_21_10790001 chr2L_10790001 RAL-303_100b 612 chr2L 10803747 10803805 chr2L 10803857 10803916 10 110 33.0 29.0 31.0 0.3 169 chr2L 10803747 intergenic not near genes chr2L 10803832 intergenic Nos - chr2L 10803916 intergenic Nos - chr2L_10_10800001 chr2L_10800001 RAL-303_100b 613 chr2L 10836737 10836776 chr2L 10836841 10836879 12 103 41.5 37.0 39.2 0.3 142 chr2L 10836737 intron Nos - chr2L 10836808 intron Nos - chr2L 10836879 intron Nos - chr2L_12_10835001 chr2L_10835001 RAL-303_100b 614 chr2L 10850123 10850178 chr2L 10850243 10850298 28 115 49.5 49.5 49.5 0.6 175 chr2L 10850123 5` UTR porin - chr2L 10850210 5` UTR,5` UTR porin -,CG43129 + chr2L 10850298 5` UTR,intron porin -,CG43129 + chr2L_28_10850001 chr2L_10850001 RAL-303_100b 615 chr2L 10852154 10852182 chr2L 10852268 10852296 11 112 28.0 39.0 33.5 0.3 142 chr2L 10852154 intron CG43129 + chr2L 10852225 intron CG43129 + chr2L 10852296 intron CG43129 + chr2L_11_10850001 chr2L_10850001 RAL-303_100b 616 chr2L 10862833 10862836 chr2L 10864472 10864475 Rt1c 4 1639 26.5 30.0 28.2 0.1 1642 chr2L 10862833 3` UTR CR43807 - chr2L 10863654 intron CR43807 - chr2L 10864475 3` UTR CR43807 - chr2L_4_10860001 chr2L_10860001 RAL-303_100b 617 chr2L 10862838 10862864 chr2L 10864457 10864501 Rt1c 21 1634 18.0 22.0 20.0 1.0 1663 chr2L 10862838 3` UTR CR43807 - chr2L 10863670 intron CR43807 - chr2L 10864501 3` UTR CR43807 - chr2L_21_10860001 chr2L_10860001 RAL-303_100b 618 chr2L 10862866 10862873 chr2L 10864455 10864487 Rt1c 12 1623 12.5 19.5 16.0 0.7 1621 chr2L 10862866 3` UTR CR43807 - chr2L 10863676 intron CR43807 - chr2L 10864487 3` UTR CR43807 - chr2L_12_10860001 chr2L_10860001 RAL-303_100b 619 chr2L 10876550 10876568 chr2L 10883631 10883655 297 7 7081 15.5 2.5 9.0 0.7 7105 chr2L 10876550 intergenic not near genes chr2L 10880102 intergenic not near genes chr2L 10883655 intergenic not near genes chr2L_7_10880001 chr2L_10880001 RAL-303_100b 620 chr2L 10912966 10913002 chr2L 10913070 10913106 25 103 53.5 49.5 51.5 0.5 140 chr2L 10912966 intergenic not near genes chr2L 10913036 intergenic not near genes chr2L 10913106 intergenic not near genes chr2L_25_10910001 chr2L_10910001 RAL-303_100b 621 chr2L 10919776 10919830 chr2L 10919890 10919944 22 113 41.5 40.5 41.0 0.5 168 chr2L 10919776 intron dpr2 - chr2L 10919860 intron dpr2 - chr2L 10919944 intron dpr2 - chr2L_22_10915001 chr2L_10915001 RAL-303_100b 622 chr2L 10946925 10946936 chr2L 10956165 10956176 roo 9 9240 44.5 20.0 32.2 0.3 9251 chr2L 10946925 intron dpr2 - chr2L 10951550 intron dpr2 - chr2L 10956176 intron dpr2 - chr2L_9_10950001 chr2L_10950001 RAL-303_100b 623 chr2L 10946941 10946975 chr2L 10956163 10956210 roo 42 9234 19.0 19.0 19.0 2.1 9269 chr2L 10946941 intron dpr2 - chr2L 10951576 intron dpr2 - chr2L 10956210 intron dpr2 - chr2L_42_10950001 chr2L_10950001 RAL-303_100b 624 chr2L 11012270 11012329 chr2L 11012383 11012427 22 111 36.0 32.0 34.0 0.6 157 chr2L 11012270 intergenic dUTPase + chr2L 11012348 intergenic dUTPase + chr2L 11012427 intergenic dUTPase + chr2L_22_11010001 chr2L_11010001 RAL-303_100b 625 chr2L 11055022 11055074 chr2L 11055132 11055184 15 109 43.0 32.5 37.8 0.4 162 chr2L 11055022 intron Samuel - chr2L 11055103 intron Samuel - chr2L 11055184 intron Samuel - chr2L_15_11055001 chr2L_11055001 RAL-303_100b 626 chr2L 11056198 11056241 chr2L 11056337 11056379 11 138 36.0 44.0 40.0 0.3 181 chr2L 11056198 intron Samuel - chr2L 11056288 intron Samuel - chr2L 11056379 intron Samuel - chr2L_11_11055001 chr2L_11055001 RAL-303_100b 627 chr2L 11074044 11074046 chr2L 11074165 11074167 4 121 49.5 33.5 41.5 0.1 123 chr2L 11074044 intergenic CR45725 - chr2L 11074106 intergenic CR45725 - chr2L 11074167 intergenic CR45725 - chr2L_4_11070001 chr2L_11070001 RAL-303_100b 628 chr2L 11142490 11142541 chr2L 11142597 11142648 17 106 39.0 39.5 39.2 0.4 158 chr2L 11142490 intron Gyc32E - chr2L 11142569 intron Gyc32E - chr2L 11142648 intron Gyc32E - chr2L_17_11140001 chr2L_11140001 RAL-303_100b 629 chr2L 11145679 11145733 chr2L 11145842 11145895 20 159 21.0 38.0 29.5 0.7 216 chr2L 11145679 intron Gyc32E - chr2L 11145787 intron Gyc32E - chr2L 11145895 intron Gyc32E - chr2L_20_11145001 chr2L_11145001 RAL-303_100b 630 chr2L 11169449 11169586 chr2L 11169609 11169675 36 150 11.5 12.0 11.8 2.8 226 chr2L 11169449 intron Ca-beta - chr2L 11169562 intron Ca-beta - chr2L 11169675 intron Ca-beta - chr2L_36_11165001 chr2L_11165001 RAL-303_100b 631 chr2L 11174552 11174571 chr2L 11174956 11175011 12 435 43.0 11.5 27.2 0.4 459 chr2L 11174552 intron Ca-beta - chr2L 11174782 intron Ca-beta - chr2L 11175011 intron Ca-beta - chr2L_12_11170001 chr2L_11170001 RAL-303_100b 632 chr2L 11183760 11183812 chr2L 11183881 11183923 22 120 33.0 28.5 30.8 0.7 163 chr2L 11183760 intron Ca-beta - chr2L 11183842 intron Ca-beta - chr2L 11183923 intron Ca-beta - chr2L_22_11180001 chr2L_11180001 RAL-303_100b 633 chr2L 11224035 11224086 chr2L 11224166 11224222 25 133 36.5 33.5 35.0 0.7 187 chr2L 11224035 intron ab + chr2L 11224128 intron ab + chr2L 11224222 intron ab + chr2L_25_11220001 chr2L_11220001 RAL-303_100b 634 chr2L 11292350 11292408 chr2L 11292457 11292515 57 104 15.0 16.5 15.8 3.4 165 chr2L 11292350 intergenic not near genes chr2L 11292432 intergenic not near genes chr2L 11292515 intergenic not near genes chr2L_57_11290001 chr2L_11290001 RAL-303_100b 635 chr2L 11293704 11293750 chr2L 11293866 11293906 29 161 20.5 24.5 22.5 1.2 202 chr2L 11293704 intergenic not near genes chr2L 11293805 intergenic not near genes chr2L 11293906 intergenic not near genes chr2L_29_11290001 chr2L_11290001 RAL-303_100b 636 chr2L 11315244 11315272 chr2L 11317673 11317701 G2 19 2428 13.5 13.5 13.5 1.3 2457 chr2L 11315244 intergenic not near genes chr2L 11316472 intergenic not near genes chr2L 11317701 intergenic not near genes chr2L_19_11315001 chr2L_11315001 RAL-303_100b 637 chr2L 11339716 11339938 chr2L 11339812 11340039 33 97 43.5 40.5 42.0 0.8 323 chr2L 11339716 intergenic not near genes chr2L 11339878 intergenic not near genes chr2L 11340039 intergenic not near genes chr2L_33_11335001 chr2L_11335001 RAL-303_100b 638 chr2L 11379924 11379975 chr2L 11380031 11380082 9 104 39.5 24.0 31.8 0.3 158 chr2L 11379924 intergenic not near genes chr2L 11380003 intergenic not near genes chr2L 11380082 intergenic not near genes chr2L_9_11380001 chr2L_11380001 RAL-303_100b 639 chr2L 11380586 11380599 chr2L 11380688 11380700 10 99 10.5 7.0 8.8 1.0 114 chr2L 11380586 intergenic not near genes chr2L 11380643 intergenic not near genes chr2L 11380700 intergenic not near genes chr2L_10_11380001 chr2L_11380001 RAL-303_100b 640 chr2L 11380600 11380642 chr2L 11380687 11380738 28 96 7.0 5.5 6.2 3.9 138 chr2L 11380600 intergenic not near genes chr2L 11380669 intergenic not near genes chr2L 11380738 intergenic not near genes chr2L_28_11380001 chr2L_11380001 RAL-303_100b 641 chr2L 11399520 11399534 chr2L 11399605 11399636 4 96 23.0 12.5 17.8 0.2 116 chr2L 11399520 intergenic not near genes chr2L 11399578 intergenic not near genes chr2L 11399636 intergenic not near genes chr2L_4_11395001 chr2L_11395001 RAL-303_100b 642 chr2L 11413269 11413313 chr2L 11413415 11413462 25 147 37.0 27.0 32.0 0.8 193 chr2L 11413269 intergenic not near genes chr2L 11413366 intergenic not near genes chr2L 11413462 intergenic not near genes chr2L_25_11410001 chr2L_11410001 RAL-303_100b 643 chr2L 11449334 11449339 chr2L 11449451 11449456 7 117 19.5 0.0 9.8 0.6 122 chr2L 11449334 intergenic not near genes chr2L 11449395 intergenic not near genes chr2L 11449456 intergenic not near genes chr2L_7_11445001 chr2L_11445001 RAL-303_100b 644 chr2L 11455537 11455596 chr2L 11455647 11455706 53 107 10.0 11.0 10.5 4.6 169 chr2L 11455537 intergenic not near genes chr2L 11455622 intergenic not near genes chr2L 11455706 intergenic not near genes chr2L_53_11455001 chr2L_11455001 RAL-303_100b 645 chr2L 11491116 11491157 chr2L 11491207 11491250 19 100 25.0 16.0 20.5 0.9 134 chr2L 11491116 intergenic not near genes chr2L 11491183 intergenic not near genes chr2L 11491250 intergenic not near genes chr2L_19_11490001 chr2L_11490001 RAL-303_100b 646 chr2L 11492987 11492995 chr2L 11493152 11493160 5 165 23.0 26.5 24.8 0.2 173 chr2L 11492987 intergenic not near genes chr2L 11493074 intergenic not near genes chr2L 11493160 intergenic not near genes chr2L_5_11490001 chr2L_11490001 RAL-303_100b 647 chr2L 11496610 11496616 chr2L 11496713 11496719 6 102 38.0 10.0 24.0 0.2 109 chr2L 11496610 intergenic CG6488 - chr2L 11496664 intergenic CG6488 - chr2L 11496719 intergenic CG6488 - chr2L_6_11495001 chr2L_11495001 RAL-303_100b 648 chr2L 11496619 11496654 chr2L 11496712 11496757 43 99 16.0 10.0 13.0 3.1 138 chr2L 11496619 intergenic CG6488 - chr2L 11496688 intergenic CG6488 - chr2L 11496757 intergenic CG6488 - chr2L_43_11495001 chr2L_11495001 RAL-303_100b 649 chr2L 11537097 11537143 chr2L 11537386 11537415 21 279 26.0 25.5 25.8 0.8 318 chr2L 11537097 intergenic CG43438 + chr2L 11537256 intergenic CG43438 + chr2L 11537415 intergenic not near genes chr2L_21_11535001 chr2L_11535001 RAL-303_100b 650 chr2L 11540559 11540612 chr2L 11547986 11548039 Tabor 22 7425 7.5 20.5 14.0 1.5 7480 chr2L 11540559 intergenic not near genes chr2L 11544299 intergenic not near genes chr2L 11548039 intergenic not near genes chr2L_22_11540001 chr2L_11540001 RAL-303_100b 651 chr2L 11555384 11555429 chr2L 11555529 11555573 13 144 39.0 23.5 31.2 0.4 189 chr2L 11555384 intergenic not near genes chr2L 11555478 intergenic not near genes chr2L 11555573 intergenic not near genes chr2L_13_11555001 chr2L_11555001 RAL-303_100b 652 chr2L 11563616 11563639 chr2L 11568845 11568853 copia 22 5226 22.5 19.5 21.0 1.0 5237 chr2L 11563616 intergenic not near genes chr2L 11566234 intergenic not near genes chr2L 11568853 intergenic not near genes chr2L_22_11565001 chr2L_11565001 RAL-303_100b 653 chr2L 11563643 11563669 chr2L 11568839 11568898 copia 27 5224 13.0 16.0 14.5 1.7 5255 chr2L 11563643 intergenic not near genes chr2L 11566270 intergenic not near genes chr2L 11568898 intergenic not near genes chr2L_27_11565001 chr2L_11565001 RAL-303_100b 654 chr2L 11596828 11596859 chr2L 11596933 11596964 10 105 12.0 20.5 16.2 0.6 136 chr2L 11596828 intron kek2 + chr2L 11596896 intron kek2 + chr2L 11596964 intron kek2 + chr2L_10_11595001 chr2L_11595001 RAL-303_100b 655 chr2L 11610518 11610576 chr2L 11610622 11610679 29 102 13.0 7.5 10.2 2.6 161 chr2L 11610518 intron,3` UTR kek2 +,spag4 - chr2L 11610598 intron,3` UTR kek2 +,spag4 - chr2L 11610679 intron,exon kek2 +,spag4 - chr2L_29_11610001 chr2L_11610001 RAL-303_100b 656 chr2L 11614041 11614085 chr2L 11615546 11615597 hopper2 44 1506 12.5 12.0 12.2 3.3 1556 chr2L 11614041 intron kek2 + chr2L 11614819 intron kek2 + chr2L 11615597 intron kek2 + chr2L_44_11610001 chr2L_11610001 RAL-303_100b 657 chr2L 11657946 11658005 chr2L 11658056 11658079 25 105 37.5 46.5 42.0 0.6 133 chr2L 11657946 3` UTR CG43167 + chr2L 11658012 intergenic CG43167 + chr2L 11658079 intergenic CG43167 + chr2L_25_11655001 chr2L_11655001 RAL-303_100b 658 chr2L 11665815 11665861 chr2L 11665913 11665964 15 103 32.5 41.5 37.0 0.4 149 chr2L 11665815 intergenic CR44481 + chr2L 11665890 intergenic CR44481 + chr2L 11665964 intergenic CR44481 + chr2L_15_11665001 chr2L_11665001 RAL-303_100b 659 chr2L 11672118 11672166 chr2L 11672250 11672298 17 132 19.5 23.0 21.2 0.8 180 chr2L 11672118 intergenic not near genes chr2L 11672208 intergenic not near genes chr2L 11672298 intergenic not near genes chr2L_17_11670001 chr2L_11670001 RAL-303_100b 660 chr2L 11676303 11676316 chr2L 11676416 11676429 10 113 5.5 0.5 3.0 2.5 126 chr2L 11676303 intergenic not near genes chr2L 11676366 intergenic not near genes chr2L 11676429 intergenic not near genes chr2L_10_11675001 chr2L_11675001 RAL-303_100b 661 chr2L 11681761 11681773 chr2L 11681873 11681885 4 112 32.0 18.0 25.0 0.2 124 chr2L 11681761 intergenic not near genes chr2L 11681823 intergenic not near genes chr2L 11681885 intergenic not near genes chr2L_4_11680001 chr2L_11680001 RAL-303_100b 662 chr2L 11713492 11713539 chr2L 11720975 11721032 blood 43 7488 9.5 17.0 13.2 3.0 7540 chr2L 11713492 intergenic not near genes chr2L 11717262 intergenic not near genes chr2L 11721032 intergenic CR44143 + chr2L_43_11715001 chr2L_11715001 RAL-303_100b 663 chr2L 11723069 11723124 chr2L 11723175 11723230 20 104 41.5 35.5 38.5 0.5 161 chr2L 11723069 intergenic not near genes chr2L 11723150 intergenic not near genes chr2L 11723230 intergenic not near genes chr2L_20_11720001 chr2L_11720001 RAL-303_100b 664 chr2L 11750300 11750340 chr2L 11750611 11750651 27 310 39.5 47.5 43.5 0.6 351 chr2L 11750300 intergenic not near genes chr2L 11750476 intergenic not near genes chr2L 11750651 intergenic not near genes chr2L_27_11750001 chr2L_11750001 RAL-303_100b 665 chr2L 11770572 11770632 chr2L 11770684 11770744 65 110 15.5 11.5 13.5 4.5 172 chr2L 11770572 intergenic not near genes chr2L 11770658 intergenic not near genes chr2L 11770744 intergenic not near genes chr2L_65_11770001 chr2L_11770001 RAL-303_100b 666 chr2L 11781010 11781194 chr2L 11781119 11781295 26 103 0.5 0.0 0.2 21.7 285 chr2L 11781010 intergenic not near genes chr2L 11781152 intergenic not near genes chr2L 11781295 intergenic not near genes chr2L_26_11780001 chr2L_11780001 RAL-303_100b 667 chr2L 11820401 11820464 chr2L 11820511 11820570 48 104 3.0 14.5 8.8 4.9 169 chr2L 11820401 intron Pde1c - chr2L 11820486 intron Pde1c - chr2L 11820570 intron Pde1c - chr2L_48_11820001 chr2L_11820001 RAL-303_100b 668 chr2L 11825681 11825696 chr2L 11825785 11825794 10 103 32.0 0.0 16.0 0.6 113 chr2L 11825681 intron Pde1c - chr2L 11825738 intron Pde1c - chr2L 11825794 intron Pde1c - chr2L_10_11825001 chr2L_11825001 RAL-303_100b 669 chr2L 11841321 11841351 chr2L 11841443 11841468 13 119 35.5 27.0 31.2 0.4 147 chr2L 11841321 intron Pde1c - chr2L 11841394 intron Pde1c - chr2L 11841468 intron Pde1c - chr2L_13_11840001 chr2L_11840001 RAL-303_100b 670 chr2L 11845068 11845107 chr2L 11845499 11845550 26 441 33.5 51.5 42.5 0.6 482 chr2L 11845068 intron Pde1c - chr2L 11845309 intron Pde1c - chr2L 11845550 intron Pde1c - chr2L_26_11845001 chr2L_11845001 RAL-303_100b 671 chr2L 11866985 11867012 chr2L 11867122 11867149 15 135 56.0 46.5 51.2 0.3 164 chr2L 11866985 intron Pde1c - chr2L 11867067 intron Pde1c - chr2L 11867149 intron Pde1c - chr2L_15_11865001 chr2L_11865001 RAL-303_100b 672 chr2L 11896866 11896871 chr2L 11900073 11900078 X-element 5 3207 57.5 27.5 42.5 0.1 3212 chr2L 11896866 intron Pde1c - chr2L 11898472 intron Pde1c - chr2L 11900078 intron Pde1c - chr2L_5_11895001 chr2L_11895001 RAL-303_100b 673 chr2L 11951944 11951994 chr2L 11952057 11952107 20 112 23.5 15.0 19.2 1.0 163 chr2L 11951944 intergenic CR43314 - chr2L 11952026 intergenic CR43314 - chr2L 11952107 intergenic CR43314 - chr2L_20_11950001 chr2L_11950001 RAL-303_100b 674 chr2L 12026762 12026776 chr2L 12026964 12026982 4 205 32.0 29.0 30.5 0.1 220 chr2L 12026762 intergenic not near genes chr2L 12026872 intergenic not near genes chr2L 12026982 intergenic dmGlut + chr2L_4_12025001 chr2L_12025001 RAL-303_100b 675 chr2L 12031379 12031418 chr2L 12031475 12031524 17 104 38.5 39.0 38.8 0.4 145 chr2L 12031379 intron dmGlut + chr2L 12031452 intron dmGlut + chr2L 12031524 intron dmGlut + chr2L_17_12030001 chr2L_12030001 RAL-303_100b 676 chr2L 12049707 12049763 chr2L 12049847 12049901 23 137 45.5 55.5 50.5 0.4 194 chr2L 12049707 5` UTR CG14945 + chr2L 12049804 5` UTR CG14945 + chr2L 12049901 5` UTR CG14945 + chr2L_23_12045001 chr2L_12045001 RAL-303_100b 677 chr2L 12067309 12067358 chr2L 12074380 12074435 297 47 7077 13.5 12.0 12.8 3.4 7126 chr2L 12067309 intergenic not near genes chr2L 12070872 intergenic not near genes chr2L 12074435 intergenic not near genes chr2L_47_12070001 chr2L_12070001 RAL-303_100b 678 chr2L 12131444 12131496 chr2L 12131565 12131617 23 120 23.0 16.5 19.8 1.1 173 chr2L 12131444 intron rho-6 - chr2L 12131530 intron rho-6 - chr2L 12131617 intron rho-6 - chr2L_23_12130001 chr2L_12130001 RAL-303_100b 679 chr2L 12132697 12132749 chr2L 12132808 12132860 34 110 1.0 16.5 8.8 3.5 163 chr2L 12132697 intron rho-6 - chr2L 12132778 intron rho-6 - chr2L 12132860 intron rho-6 - chr2L_34_12130001 chr2L_12130001 RAL-303_100b 680 chr2L 12141160 12141203 chr2L 12141265 12141308 18 105 20.0 6.5 13.2 1.3 148 chr2L 12141160 intergenic not near genes chr2L 12141234 intergenic not near genes chr2L 12141308 intergenic not near genes chr2L_18_12140001 chr2L_12140001 RAL-303_100b 681 chr2L 12157593 12157634 chr2L 12157690 12157739 14 97 39.0 37.0 38.0 0.4 146 chr2L 12157593 intron CG31760 + chr2L 12157666 intron CG31760 + chr2L 12157739 intron CG31760 + chr2L_14_12155001 chr2L_12155001 RAL-303_100b 682 chr2L 12175792 12175849 chr2L 12175898 12175956 9 105 12.5 6.0 9.2 0.9 164 chr2L 12175792 intron,intron aret +,atilla - chr2L 12175874 intron,intron aret +,atilla - chr2L 12175956 intron,intron aret +,atilla - chr2L_9_12175001 chr2L_12175001 RAL-303_100b 683 chr2L 12210020 12210045 chr2L 12210134 12210159 6 113 25.0 20.5 22.8 0.3 139 chr2L 12210020 intron aret + chr2L 12210090 intron aret + chr2L 12210159 intron aret + chr2L_6_12210001 chr2L_12210001 RAL-303_100b 684 chr2L 12224893 12224900 chr2L 12224969 12224990 6 91 35.0 47.0 41.0 0.1 97 chr2L 12224893 intron aret + chr2L 12224942 intron aret + chr2L 12224990 intron aret + chr2L_6_12220001 chr2L_12220001 RAL-303_100b 685 chr2L 12244875 12244892 chr2L 12244988 12245005 12 113 56.0 14.0 35.0 0.3 130 chr2L 12244875 intron aret + chr2L 12244940 intron aret + chr2L 12245005 intron aret + chr2L_12_12240001 chr2L_12240001 RAL-303_100b 686 chr2L 12245196 12245206 chr2L 12246283 12246293 4 1087 20.0 35.5 27.8 0.1 1097 chr2L 12245196 intron aret + chr2L 12245744 intron aret + chr2L 12246293 intron aret + chr2L_4_12245001 chr2L_12245001 RAL-303_100b 687 chr2L 12254001 12254046 chr2L 12254118 12254140 12 115 16.0 0.0 8.0 1.3 139 chr2L 12254001 intron aret + chr2L 12254070 intron aret + chr2L 12254140 intron aret + chr2L_12_12250001 chr2L_12250001 RAL-303_100b 688 chr2L 12263919 12263973 chr2L 12264026 12264068 33 103 39.0 39.5 39.2 0.8 149 chr2L 12263919 intron aret + chr2L 12263994 intron aret + chr2L 12264068 intron aret + chr2L_33_12260001 chr2L_12260001 RAL-303_100b 689 chr2L 12269390 12269401 chr2L 12269492 12269504 5 103 33.5 41.0 37.2 0.1 114 chr2L 12269390 intron aret + chr2L 12269447 intron aret + chr2L 12269504 intron aret + chr2L_5_12265001 chr2L_12265001 RAL-303_100b 690 chr2L 12269818 12269848 chr2L 12270058 12270088 16 239 27.0 33.0 30.0 0.5 270 chr2L 12269818 intron aret + chr2L 12269953 intron aret + chr2L 12270088 intron aret + chr2L_16_12265001 chr2L_12265001 RAL-303_100b 691 chr2L 12272415 12272468 chr2L 12272524 12272580 21 109 41.0 56.5 48.8 0.4 165 chr2L 12272415 intron aret + chr2L 12272498 intron aret + chr2L 12272580 intron aret + chr2L_21_12270001 chr2L_12270001 RAL-303_100b 692 chr2L 12285830 12285830 chr2L 14421049 14421049 5 2135219 55.0 69.0 62.0 0.1 2135219 chr2L 12285830 intron aret + chr2L 13353440 intron CG9395 - chr2L 14421049 intergenic not near genes chr2L_5_13350001 chr2L_13350001 RAL-303_100b 693 chr2L 12293540 12293590 chr2L 12293662 12293712 23 121 38.5 41.0 39.8 0.6 172 chr2L 12293540 intron aret + chr2L 12293626 intron aret + chr2L 12293712 intron aret + chr2L_23_12290001 chr2L_12290001 RAL-303_100b 694 chr2L 12294226 12294253 chr2L 12294333 12294360 10 107 18.5 8.5 13.5 0.7 134 chr2L 12294226 intron aret + chr2L 12294293 intron aret + chr2L 12294360 intron aret + chr2L_10_12290001 chr2L_12290001 RAL-303_100b 695 chr2L 12300326 12300383 chr2L 12300443 12300500 6 117 36.5 34.5 35.5 0.2 174 chr2L 12300326 intron aret + chr2L 12300413 intron aret + chr2L 12300500 intron aret + chr2L_6_12300001 chr2L_12300001 RAL-303_100b 696 chr2L 12305385 12305437 chr2L 12305498 12305550 33 111 40.5 40.0 40.2 0.8 165 chr2L 12305385 intron aret + chr2L 12305468 intron aret + chr2L 12305550 intron aret + chr2L_33_12305001 chr2L_12305001 RAL-303_100b 697 chr2L 12371021 12371056 chr2L 12371131 12371166 19 110 38.5 32.5 35.5 0.5 145 chr2L 12371021 intron bru-2 + chr2L 12371094 intron bru-2 + chr2L 12371166 intron bru-2 + chr2L_19_12370001 chr2L_12370001 RAL-303_100b 698 chr2L 12410983 12411036 chr2L 12411087 12411138 25 100 50.5 41.5 46.0 0.5 155 chr2L 12410983 intron vir-1 - chr2L 12411060 intron vir-1 - chr2L 12411138 intron vir-1 - chr2L_25_12410001 chr2L_12410001 RAL-303_100b 699 chr2L 12422438 12422481 chr2L 12422547 12422590 24 107 45.5 49.0 47.2 0.5 152 chr2L 12422438 intron vir-1 - chr2L 12422514 intron vir-1 - chr2L 12422590 intron vir-1 - chr2L_24_12420001 chr2L_12420001 RAL-303_100b 700 chr2L 12424345 12424364 chr2L 12424446 12424465 6 101 9.0 15.5 12.2 0.5 120 chr2L 12424345 intergenic not near genes chr2L 12424405 intergenic CG6405 + chr2L 12424465 intergenic CG6405 + chr2L_6_12420001 chr2L_12420001 RAL-303_100b 701 chr2L 12424369 12424379 chr2L 12424422 12424480 6 87 8.0 11.0 9.5 0.6 111 chr2L 12424369 intergenic not near genes chr2L 12424424 intergenic CG6405 + chr2L 12424480 intergenic CG6405 + chr2L_6_12420001 chr2L_12420001 RAL-303_100b 702 chr2L 12426109 12426115 chr2L 12426217 12426222 7 108 45.5 41.5 43.5 0.2 113 chr2L 12426109 exon CG6405 + chr2L 12426166 exon CG6405 + chr2L 12426222 exon CG6405 + chr2L_7_12425001 chr2L_12425001 RAL-303_100b 703 chr2L 12426116 12426164 chr2L 12426214 12426215 28 100 42.0 41.0 41.5 0.7 99 chr2L 12426116 exon CG6405 + chr2L 12426166 exon CG6405 + chr2L 12426215 exon CG6405 + chr2L_28_12425001 chr2L_12425001 RAL-303_100b 704 chr2L 12471133 12471141 chr2L 12471209 12471242 8 95 13.5 24.0 18.8 0.4 109 chr2L 12471133 intron bun - chr2L 12471188 intron bun - chr2L 12471242 intron bun - chr2L_8_12470001 chr2L_12470001 RAL-303_100b 705 chr2L 12480532 12480574 chr2L 12480634 12480676 18 100 33.0 31.0 32.0 0.5 144 chr2L 12480532 intron bun - chr2L 12480604 intron bun - chr2L 12480676 intron bun - chr2L_18_12480001 chr2L_12480001 RAL-303_100b 706 chr2L 12481354 12481405 chr2L 12481461 12481512 14 106 35.0 33.0 34.0 0.4 158 chr2L 12481354 intron bun - chr2L 12481433 intron bun - chr2L 12481512 intron bun - chr2L_14_12480001 chr2L_12480001 RAL-303_100b 707 chr2L 12487864 12487875 chr2L 12487970 12487981 10 105 66.5 63.0 64.8 0.2 117 chr2L 12487864 intron bun - chr2L 12487922 intron bun - chr2L 12487981 intron bun - chr2L_10_12485001 chr2L_12485001 RAL-303_100b 708 chr2L 12487879 12487918 chr2L 12487967 12488023 30 101 53.0 63.5 58.2 0.5 144 chr2L 12487879 intron bun - chr2L 12487951 intron bun - chr2L 12488023 intron bun - chr2L_30_12485001 chr2L_12485001 RAL-303_100b 709 chr2L 12496039 12496063 chr2L 12496414 12496448 11 380 25.0 40.5 32.8 0.3 409 chr2L 12496039 intron bun - chr2L 12496244 intron bun - chr2L 12496448 intron bun - chr2L_11_12495001 chr2L_12495001 RAL-303_100b 710 chr2L 12496123 12496181 chr2L 12499290 12499347 34 3169 52.5 102.5 77.5 0.4 3224 chr2L 12496123 intron bun - chr2L 12497735 intron bun - chr2L 12499347 intron bun - chr2L_34_12495001 chr2L_12495001 RAL-303_100b 711 chr2L 12507259 12507297 chr2L 12507373 12507412 13 114 31.0 26.0 28.5 0.4 153 chr2L 12507259 intron bun - chr2L 12507336 intron bun - chr2L 12507412 intron bun - chr2L_13_12505001 chr2L_12505001 RAL-303_100b 712 chr2L 12529209 12529222 chr2L 12529386 12529399 9 176 29.0 8.5 18.8 0.5 190 chr2L 12529209 intron bun - chr2L 12529304 intron bun - chr2L 12529399 intron bun - chr2L_9_12525001 chr2L_12525001 RAL-303_100b 713 chr2L 12529224 12529427 chr2L 12529382 12529528 35 155 28.5 8.0 18.2 1.8 304 chr2L 12529224 intron bun - chr2L 12529376 intron bun - chr2L 12529528 intron bun - chr2L_35_12525001 chr2L_12525001 RAL-303_100b 714 chr2L 12547443 12547490 chr2L 12547551 12547587 6 107 27.5 34.0 30.8 0.2 144 chr2L 12547443 intergenic not near genes chr2L 12547515 intergenic not near genes chr2L 12547587 intergenic not near genes chr2L_6_12545001 chr2L_12545001 RAL-303_100b 715 chr2L 12558294 12558353 chr2L 12565448 12565507 HMS-Beagle 47 7151 8.5 9.5 9.0 4.7 7213 chr2L 12558294 intergenic not near genes chr2L 12561900 intergenic not near genes chr2L 12565507 intergenic not near genes chr2L_47_12560001 chr2L_12560001 RAL-303_100b 716 chr2L 12598180 12598197 chr2L 12598282 12598299 14 100 34.5 43.0 38.8 0.4 119 chr2L 12598180 intron nub + chr2L 12598240 intron nub + chr2L 12598299 intron nub + chr2L_14_12595001 chr2L_12595001 RAL-303_100b 717 chr2L 12598989 12598996 chr2L 12599086 12599103 7 106 30.5 50.0 40.2 0.2 114 chr2L 12598989 intron nub + chr2L 12599046 intron nub + chr2L 12599103 intron nub + chr2L_7_12595001 chr2L_12595001 RAL-303_100b 718 chr2L 12619878 12619905 chr2L 12619979 12620006 26 99 22.0 16.0 19.0 1.3 128 chr2L 12619878 intron,intron nub +,Ref2 - chr2L 12619942 intron,intron nub +,Ref2 - chr2L 12620006 intron,intron nub +,Ref2 - chr2L_26_12615001 chr2L_12615001 RAL-303_100b 719 chr2L 12638522 12638562 chr2L 12638664 12638704 21 142 35.0 46.0 40.5 0.5 182 chr2L 12638522 intron Ref2 - chr2L 12638613 intron Ref2 - chr2L 12638704 intron Ref2 - chr2L_21_12635001 chr2L_12635001 RAL-303_100b 720 chr2L 12653771 12653811 chr2L 12653907 12653953 17 141 22.0 30.0 26.0 0.6 182 chr2L 12653771 intergenic not near genes chr2L 12653862 intergenic not near genes chr2L 12653953 intergenic not near genes chr2L_17_12650001 chr2L_12650001 RAL-303_100b 721 chr2L 12682848 12682901 chr2L 12682952 12683005 33 101 50.0 44.5 47.2 0.7 157 chr2L 12682848 intron pdm2 + chr2L 12682926 intron pdm2 + chr2L 12683005 intron pdm2 + chr2L_33_12680001 chr2L_12680001 RAL-303_100b 722 chr2L 12728897 12728949 chr2L 12729161 12729214 pogo 43 262 20.0 11.0 15.5 2.6 317 chr2L 12728897 intron MRP + chr2L 12729056 intron MRP + chr2L 12729214 exon MRP + chr2L_43_12725001 chr2L_12725001 RAL-303_100b 723 chr2L 12731033 12731087 chr2L 12735825 12735879 F-element 50 4791 16.5 15.0 15.8 3.0 4846 chr2L 12731033 intron MRP + chr2L 12733456 intron MRP + chr2L 12735879 intron MRP + chr2L_50_12730001 chr2L_12730001 RAL-303_100b 724 chr2L 12739153 12739158 chr2L 12743959 12743964 Doc 5 4806 36.0 21.5 28.8 0.2 4811 chr2L 12739153 exon MRP + chr2L 12741558 intron MRP + chr2L 12743964 intron MRP + chr2L_5_12740001 chr2L_12740001 RAL-303_100b 725 chr2L 12739159 12739200 chr2L 12743955 12743983 Doc 58 4802 14.0 19.5 16.8 3.3 4824 chr2L 12739159 exon MRP + chr2L 12741571 intron MRP + chr2L 12743983 exon MRP + chr2L_58_12740001 chr2L_12740001 RAL-303_100b 726 chr2L 12751286 12751337 chr2L 12751394 12751445 43 106 10.5 12.0 11.2 3.5 159 chr2L 12751286 intergenic not near genes chr2L 12751366 intergenic not near genes chr2L 12751445 intergenic not near genes chr2L_43_12750001 chr2L_12750001 RAL-303_100b 727 chr2L 12760220 12760257 chr2L 12760341 12760378 25 121 16.0 12.0 14.0 1.7 158 chr2L 12760220 intergenic CG15483 - chr2L 12760299 intergenic CG15483 - chr2L 12760378 3` UTR CG15483 - chr2L_25_12760001 chr2L_12760001 RAL-303_100b 728 chr2L 12763803 12763864 chr2L 12764040 12764087 BS 12 235 0.5 0.5 0.5 8.0 284 chr2L 12763803 intergenic not near genes chr2L 12763945 intergenic not near genes chr2L 12764087 intergenic not near genes chr2L_12_12760001 chr2L_12760001 RAL-303_100b 729 chr2L 12766734 12766779 chr2L 12766837 12766877 44 102 15.0 6.0 10.5 3.8 143 chr2L 12766734 intergenic not near genes chr2L 12766806 intergenic not near genes chr2L 12766877 intergenic not near genes chr2L_44_12765001 chr2L_12765001 RAL-303_100b 730 chr2L 12781777 12781815 chr2L 12789245 12789273 Quasimodo 39 7467 27.0 15.5 21.2 1.8 7496 chr2L 12781777 intergenic not near genes chr2L 12785525 intergenic not near genes chr2L 12789273 intergenic not near genes chr2L_39_12785001 chr2L_12785001 RAL-303_100b 731 chr2L 12791582 12791594 chr2L 12795282 12795294 F-element 9 3698 25.5 22.5 24.0 0.4 3712 chr2L 12791582 intergenic not near genes chr2L 12793438 intergenic not near genes chr2L 12795294 intergenic not near genes chr2L_9_12790001 chr2L_12790001 RAL-303_100b 732 chr2L 12791596 12791638 chr2L 12795279 12795338 F-element 40 3689 8.0 20.5 14.2 2.6 3742 chr2L 12791596 intergenic not near genes chr2L 12793467 intergenic not near genes chr2L 12795338 intergenic not near genes chr2L_40_12790001 chr2L_12790001 RAL-303_100b 733 chr2L 12807413 12807465 chr2L 12807520 12807572 22 106 28.5 28.5 28.5 0.7 159 chr2L 12807413 intergenic CR43818 - chr2L 12807492 intergenic CR43818 - chr2L 12807572 intergenic CR43818 - chr2L_22_12805001 chr2L_12805001 RAL-303_100b 734 chr2L 12809172 12809221 chr2L 12809283 12809332 22 109 28.5 33.5 31.0 0.7 160 chr2L 12809172 intergenic not near genes chr2L 12809252 intergenic not near genes chr2L 12809332 intergenic not near genes chr2L_22_12805001 chr2L_12805001 RAL-303_100b 735 chr2L 12835532 12835585 chr2L 12835666 12835719 14 131 35.5 28.0 31.8 0.4 187 chr2L 12835532 intergenic not near genes chr2L 12835626 intergenic not near genes chr2L 12835719 intergenic not near genes chr2L_14_12835001 chr2L_12835001 RAL-303_100b 736 chr2L 12848400 12848466 chr2L 12848517 12848579 29 113 46.5 48.5 47.5 0.6 179 chr2L 12848400 intergenic not near genes chr2L 12848490 intergenic not near genes chr2L 12848579 intergenic not near genes chr2L_29_12845001 chr2L_12845001 RAL-303_100b 737 chr2L 12861674 12861730 chr2L 12863163 12863201 hobo 70 1487 15.0 17.5 16.2 4.1 1527 chr2L 12861674 intergenic not near genes chr2L 12862438 intergenic not near genes chr2L 12863201 intergenic not near genes chr2L_70_12860001 chr2L_12860001 RAL-303_100b 738 chr2L 12880222 12880283 chr2L 12880338 12880392 46 114 32.5 43.0 37.8 1.2 170 chr2L 12880222 intergenic not near genes chr2L 12880307 intergenic not near genes chr2L 12880392 intergenic not near genes chr2L_46_12880001 chr2L_12880001 RAL-303_100b 739 chr2L 12887587 12887640 chr2L 12887688 12887741 16 98 32.5 37.5 35.0 0.4 154 chr2L 12887587 intergenic not near genes chr2L 12887664 intergenic not near genes chr2L 12887741 intergenic not near genes chr2L_16_12885001 chr2L_12885001 RAL-303_100b 740 chr2L 12894002 12894011 chr2L 12895494 12895501 hobo 6 1492 41.5 31.5 36.5 0.2 1499 chr2L 12894002 intergenic not near genes chr2L 12894752 intergenic not near genes chr2L 12895501 intergenic not near genes chr2L_6_12890001 chr2L_12890001 RAL-303_100b 741 chr2L 12894013 12894029 chr2L 12895490 12895519 hobo 13 1485 30.0 26.5 28.2 0.4 1506 chr2L 12894013 intergenic not near genes chr2L 12894766 intergenic not near genes chr2L 12895519 intergenic not near genes chr2L_13_12890001 chr2L_12890001 RAL-303_100b 742 chr2L 12894031 12894053 chr2L 12895484 12895527 hobo 20 1480 14.5 22.0 18.2 1.0 1496 chr2L 12894031 intergenic not near genes chr2L 12894779 intergenic not near genes chr2L 12895527 intergenic not near genes chr2L_20_12890001 chr2L_12890001 RAL-303_100b 743 chr2L 12930477 12930497 chr2L 12930568 12930598 11 99 39.5 30.0 34.8 0.3 121 chr2L 12930477 intergenic not near genes chr2L 12930538 intergenic not near genes chr2L 12930598 intergenic not near genes chr2L_11_12930001 chr2L_12930001 RAL-303_100b 744 chr2L 12933829 12933877 chr2L 12941317 12941368 blood 51 7489 19.5 14.5 17.0 2.8 7539 chr2L 12933829 intergenic not near genes chr2L 12937598 intergenic not near genes chr2L 12941368 intergenic not near genes chr2L_51_12935001 chr2L_12935001 RAL-303_100b 745 chr2L 12933878 12933883 chr2L 12941315 12941372 blood 8 7480 15.0 13.5 14.2 0.5 7494 chr2L 12933878 intergenic not near genes chr2L 12937625 intergenic not near genes chr2L 12941372 intergenic not near genes chr2L_8_12935001 chr2L_12935001 RAL-303_100b 746 chr2L 12949236 12949278 chr2L 12949348 12949396 14 116 61.0 37.5 49.2 0.3 160 chr2L 12949236 intergenic not near genes chr2L 12949316 intergenic not near genes chr2L 12949396 intergenic not near genes chr2L_14_12945001 chr2L_12945001 RAL-303_100b 747 chr2L 12969473 12969519 chr2L 12969713 12969727 25 233 51.5 49.0 50.2 0.5 254 chr2L 12969473 intergenic not near genes chr2L 12969600 intergenic not near genes chr2L 12969727 intergenic not near genes chr2L_25_12965001 chr2L_12965001 RAL-303_100b 748 chr2L 13032480 13032521 chr2L 13032601 13032642 20 119 48.5 49.5 49.0 0.4 162 chr2L 13032480 intron CG9932 - chr2L 13032561 intron CG9932 - chr2L 13032642 intron CG9932 - chr2L_20_13030001 chr2L_13030001 RAL-303_100b 749 chr2L 13043648 13043686 chr2L 13043749 13043788 17 101 34.5 32.5 33.5 0.5 140 chr2L 13043648 intron CG9932 - chr2L 13043718 intron CG9932 - chr2L 13043788 intron CG9932 - chr2L_17_13040001 chr2L_13040001 RAL-303_100b 750 chr2L 13049362 13049413 chr2L 13049475 13049526 24 112 40.5 42.0 41.2 0.6 164 chr2L 13049362 intron CG9932 - chr2L 13049444 intron CG9932 - chr2L 13049526 intron CG9932 - chr2L_24_13045001 chr2L_13045001 RAL-303_100b 751 chr2L 13093827 13093864 chr2L 13093930 13093967 9 98 18.5 19.5 19.0 0.5 140 chr2L 13093827 intergenic not near genes chr2L 13093897 intergenic not near genes chr2L 13093967 intergenic not near genes chr2L_9_13090001 chr2L_13090001 RAL-303_100b 752 chr2L 13109431 13109477 chr2L 13109584 13109624 18 151 25.5 13.0 19.2 0.9 193 chr2L 13109431 3` UTR CG5142 + chr2L 13109528 intergenic CG5142 + chr2L 13109624 intergenic CG5142 + chr2L_18_13105001 chr2L_13105001 RAL-303_100b 753 chr2L 13110984 13110997 chr2L 13111095 13111108 5 110 18.0 25.0 21.5 0.2 124 chr2L 13110984 intergenic not near genes chr2L 13111046 intergenic not near genes chr2L 13111108 intergenic not near genes chr2L_5_13110001 chr2L_13110001 RAL-303_100b 754 chr2L 13154115 13154124 chr2L 13154203 13154226 10 100 5.5 0.5 3.0 2.5 111 chr2L 13154115 intergenic not near genes chr2L 13154170 intergenic not near genes chr2L 13154226 intergenic not near genes chr2L_10_13150001 chr2L_13150001 RAL-303_100b 755 chr2L 13212583 13212637 chr2L 13214554 13214608 22 1977 81.5 98.5 90.0 0.2 2025 chr2L 13212583 3` UTR kek4 - chr2L 13213596 exon kek4 - chr2L 13214608 exon kek4 - chr2L_22_13210001 chr2L_13210001 RAL-303_100b 756 chr2L 13215362 13215379 chr2L 13215662 13215679 8 298 24.0 43.5 33.8 0.2 317 chr2L 13215362 intergenic kek4 -,snRNA:U2:34ABb +,snRNA:U2:34ABc + chr2L 13215520 intergenic kek4 -,snRNA:U2:34ABb +,snRNA:U2:34ABc + chr2L 13215679 intergenic snRNA:U2:34ABb +,snRNA:U2:34ABc +,kek4 - chr2L_8_13215001 chr2L_13215001 RAL-303_100b 757 chr2L 13215384 13215412 chr2L 13215655 13215707 15 297 23.0 37.5 30.2 0.5 323 chr2L 13215384 intergenic kek4 -,snRNA:U2:34ABb +,snRNA:U2:34ABc + chr2L 13215546 intergenic kek4 -,snRNA:U2:34ABb +,snRNA:U2:34ABc + chr2L 13215707 intergenic snRNA:U2:34ABb +,snRNA:U2:34ABc +,kek4 - chr2L_15_13215001 chr2L_13215001 RAL-303_100b 758 chr2L 13216049 13216054 chr2L 13216150 13216155 4 101 43.0 31.5 37.2 0.1 106 chr2L 13216049 intergenic snRNA:U2:34ABb +,snRNA:U2:34ABc +,CG9426 - chr2L 13216102 intergenic snRNA:U2:34ABb +,snRNA:U2:34ABc +,CG9426 - chr2L 13216155 intergenic snRNA:U2:34ABb +,snRNA:U2:34ABc +,CG9426 - chr2L_4_13215001 chr2L_13215001 RAL-303_100b 759 chr2L 13231859 13231915 chr2L 13231995 13232051 31 134 45.0 45.0 45.0 0.7 192 chr2L 13231859 intergenic Prosalpha6T + chr2L 13231955 intergenic Prosalpha6T + chr2L 13232051 5` UTR Prosalpha6T + chr2L_31_13230001 chr2L_13230001 RAL-303_100b 760 chr2L 13241936 13241979 chr2L 13244345 13244351 BS 5 2401 54.5 25.0 39.8 0.1 2415 chr2L 13241936 5` UTR CR45330 + chr2L 13243144 intron CR45330 + chr2L 13244351 5` UTR CR45330 + chr2L_5_13240001 chr2L_13240001 RAL-303_100b 761 chr2L 13294920 13294921 chr2L 13295019 13295022 4 100 43.0 29.0 36.0 0.1 102 chr2L 13294920 intron CG31729 + chr2L 13294971 intron CG31729 + chr2L 13295022 intron CG31729 + chr2L_4_13290001 chr2L_13290001 RAL-303_100b 762 chr2L 13341745 13341797 chr2L 13342383 13342435 32 637 48.0 42.0 45.0 0.7 690 chr2L 13341745 intergenic not near genes chr2L 13342090 intergenic not near genes chr2L 13342435 intergenic not near genes chr2L_32_13340001 chr2L_13340001 RAL-303_100b 763 chr2L 13369283 13369338 chr2L 13369385 13369440 36 100 53.5 47.5 50.5 0.7 157 chr2L 13369283 5` UTR CG31855 + chr2L 13369362 5` UTR CG31855 + chr2L 13369440 exon CG31855 + chr2L_36_13365001 chr2L_13365001 RAL-303_100b 764 chr2L 13398694 13398749 chr2L 13398799 13398854 21 105 6.5 7.5 7.0 2.6 160 chr2L 13398694 intergenic CG10859 -,CR44600 -,CG7110 + chr2L 13398774 intergenic CR44600 -,CG10859 -,CG7110 + chr2L 13398854 intergenic CR44600 -,CG7110 +,CG10859 - chr2L_21_13395001 chr2L_13395001 RAL-303_100b 765 chr2L 13401255 13401295 chr2L 13410494 13410544 Doc 24 9246 44.0 26.5 35.2 0.7 9289 chr2L 13401255 intron CG7110 + chr2L 13405900 intron CG7110 + chr2L 13410544 exon CG7110 + chr2L_24_13405001 chr2L_13405001 RAL-303_100b 766 chr2L 13405630 13405676 chr2L 13410447 13410493 Doc 26 4818 7.5 7.0 7.2 3.2 4863 chr2L 13405630 exon CG7110 + chr2L 13408062 intron CG7110 + chr2L 13410493 intron CG7110 + chr2L_26_13405001 chr2L_13405001 RAL-303_100b 767 chr2L 13422423 13422502 chr2L 13422549 13422599 10 106 29.5 40.5 35.0 0.3 176 chr2L 13422423 intron CG42784 + chr2L 13422511 intron CG42784 + chr2L 13422599 intron CG42784 + chr2L_10_13420001 chr2L_13420001 RAL-303_100b 768 chr2L 13425846 13425887 chr2L 13425949 13425978 16 106 43.5 48.5 46.0 0.3 132 chr2L 13425846 intron CG42784 + chr2L 13425912 intron CG42784 + chr2L 13425978 intron CG42784 + chr2L_16_13425001 chr2L_13425001 RAL-303_100b 769 chr2L 13449464 13449495 chr2L 13456925 13456956 Quasimodo 24 7460 8.0 20.0 14.0 1.6 7492 chr2L 13449464 intron,5` UTR CG42784 +,Hsp60D - chr2L 13453210 intron CG42784 + chr2L 13456956 intron CG42784 + chr2L_24_13450001 chr2L_13450001 RAL-303_100b 770 chr2L 13481430 13481472 chr2L 13482056 13482089 jockey 29 629 24.5 22.5 23.5 1.2 659 chr2L 13481430 intron CG42784 + chr2L 13481760 intron CG42784 + chr2L 13482089 intron CG42784 + chr2L_29_13480001 chr2L_13480001 RAL-303_100b 771 chr2L 13522108 13522164 chr2L 13527651 13527707 Transpac 37 5540 13.0 28.0 20.5 1.7 5599 chr2L 13522108 intron B4 - chr2L 13524908 intron B4 - chr2L 13527707 intron B4 - chr2L_37_13520001 chr2L_13520001 RAL-303_100b 772 chr2L 13522259 13522288 chr2L 13527590 13527619 Transpac 12 5331 7.0 11.0 9.0 1.2 5360 chr2L 13522259 intron B4 - chr2L 13524939 intron B4 - chr2L 13527619 intron B4 - chr2L_12_13520001 chr2L_13520001 RAL-303_100b 773 chr2L 13535974 13536029 chr2L 13536184 13536239 34 208 32.0 33.5 32.8 1.0 265 chr2L 13535974 intron B4 - chr2L 13536106 intron B4 - chr2L 13536239 intron B4 - chr2L_34_13535001 chr2L_13535001 RAL-303_100b 774 chr2L 13543939 13543968 chr2L 13544042 13544071 16 96 43.0 29.0 36.0 0.4 132 chr2L 13543939 intron B4 - chr2L 13544005 intron B4 - chr2L 13544071 intron B4 - chr2L_16_13540001 chr2L_13540001 RAL-303_100b 775 chr2L 13560384 13560421 chr2L 13565229 13565266 F-element 20 4844 12.5 12.0 12.2 1.5 4882 chr2L 13560384 intron kuz + chr2L 13562825 intron kuz + chr2L 13565266 intron kuz + chr2L_20_13560001 chr2L_13560001 RAL-303_100b 776 chr2L 13567641 13567653 chr2L 13567818 13567818 11 176 36.0 39.5 37.8 0.3 177 chr2L 13567641 intron kuz + chr2L 13567730 intron kuz + chr2L 13567818 intron kuz + chr2L_11_13565001 chr2L_13565001 RAL-303_100b 777 chr2L 13567654 13567675 chr2L 13567816 13567836 9 173 21.5 37.5 29.5 0.3 182 chr2L 13567654 intron kuz + chr2L 13567745 intron kuz + chr2L 13567836 intron kuz + chr2L_9_13565001 chr2L_13565001 RAL-303_100b 778 chr2L 13577730 13577776 chr2L 13577836 13577881 13 102 47.5 41.5 44.5 0.3 151 chr2L 13577730 intron kuz + chr2L 13577806 intron kuz + chr2L 13577881 intron kuz + chr2L_13_13575001 chr2L_13575001 RAL-303_100b 779 chr2L 13598991 13599000 chr2L 13599119 13599128 9 128 35.0 31.0 33.0 0.3 137 chr2L 13598991 intron kuz + chr2L 13599060 intron kuz + chr2L 13599128 intron kuz + chr2L_9_13595001 chr2L_13595001 RAL-303_100b 780 chr2L 13599001 13599019 chr2L 13599118 13599147 7 125 31.0 31.0 31.0 0.2 146 chr2L 13599001 intron kuz + chr2L 13599074 intron kuz + chr2L 13599147 intron kuz + chr2L_7_13595001 chr2L_13595001 RAL-303_100b 781 chr2L 13605026 13605081 chr2L 13605127 13605168 18 88 30.5 33.5 32.0 0.5 142 chr2L 13605026 intron kuz + chr2L 13605097 intron kuz + chr2L 13605168 intron kuz + chr2L_18_13605001 chr2L_13605001 RAL-303_100b 782 chr2L 13622110 13622140 chr2L 13622234 13622243 33 120 32.5 5.5 19.0 1.6 133 chr2L 13622110 intron kuz + chr2L 13622176 intron kuz + chr2L 13622243 intron kuz + chr2L_33_13620001 chr2L_13620001 RAL-303_100b 783 chr2L 13622141 13622165 chr2L 13622233 13622273 19 110 17.5 5.5 11.5 1.5 132 chr2L 13622141 intron kuz + chr2L 13622207 intron kuz + chr2L 13622273 intron kuz + chr2L_19_13620001 chr2L_13620001 RAL-303_100b 784 chr2L 13699530 13699584 chr2L 13699632 13699686 28 100 36.5 36.0 36.2 0.8 156 chr2L 13699530 intron CG31814 - chr2L 13699608 intron CG31814 - chr2L 13699686 intron CG31814 - chr2L_28_13695001 chr2L_13695001 RAL-303_100b 785 chr2L 13704629 13704634 chr2L 13704744 13704749 7 120 58.5 50.0 54.2 0.1 120 chr2L 13704629 intron CG31814 - chr2L 13704689 intron CG31814 - chr2L 13704749 intron CG31814 - chr2L_7_13700001 chr2L_13700001 RAL-303_100b 786 chr2L 13704636 13704674 chr2L 13704740 13704798 20 122 47.0 49.5 48.2 0.4 162 chr2L 13704636 intron CG31814 - chr2L 13704717 intron CG31814 - chr2L 13704798 intron CG31814 - chr2L_20_13700001 chr2L_13700001 RAL-303_100b 787 chr2L 13713529 13713574 chr2L 13713630 13713675 36 100 7.0 4.0 5.5 5.5 146 chr2L 13713529 intron CG31814 - chr2L 13713602 intron CG31814 - chr2L 13713675 intron CG31814 - chr2L_36_13710001 chr2L_13710001 RAL-303_100b 788 chr2L 13720223 13720239 chr2L 13720331 13720352 10 111 39.5 28.5 34.0 0.3 129 chr2L 13720223 intergenic not near genes chr2L 13720288 intergenic not near genes chr2L 13720352 intergenic not near genes chr2L_10_13720001 chr2L_13720001 RAL-303_100b 789 chr2L 13733747 13733785 chr2L 13733891 13733928 18 143 35.0 29.5 32.2 0.5 181 chr2L 13733747 intergenic not near genes chr2L 13733838 intergenic not near genes chr2L 13733928 intergenic not near genes chr2L_18_13730001 chr2L_13730001 RAL-303_100b 790 chr2L 13740872 13740911 chr2L 13740979 13741034 22 119 28.5 24.5 26.5 0.8 162 chr2L 13740872 intergenic not near genes chr2L 13740953 intergenic not near genes chr2L 13741034 intergenic not near genes chr2L_22_13740001 chr2L_13740001 RAL-303_100b 791 chr2L 13749188 13749211 chr2L 13749296 13749319 19 107 0.0 0.5 0.2 15.8 131 chr2L 13749188 intron,intron CR44846 +,TM9SF4 + chr2L 13749254 intron,intron CR44846 +,TM9SF4 + chr2L 13749319 intron,intron CR44846 +,TM9SF4 + chr2L_19_13745001 chr2L_13745001 RAL-303_100b 792 chr2L 13753255 13753305 chr2L 13753366 13753426 8 115 27.0 18.0 22.5 0.3 171 chr2L 13753255 intron,intron CR44846 +,TM9SF4 + chr2L 13753340 intron,intron CR44846 +,TM9SF4 + chr2L 13753426 intron,intron CR44846 +,TM9SF4 + chr2L_8_13750001 chr2L_13750001 RAL-303_100b 793 chr2L 13754192 13754220 chr2L 13754297 13754325 9 104 45.0 58.5 51.8 0.2 133 chr2L 13754192 intron,intron CR44846 +,TM9SF4 + chr2L 13754258 intron,intron CR44846 +,TM9SF4 + chr2L 13754325 intron,intron CR44846 +,TM9SF4 + chr2L_9_13750001 chr2L_13750001 RAL-303_100b 794 chr2L 13761780 13761800 chr2L 13762916 13762936 Doc 19 1135 34.0 15.5 24.8 0.7 1156 chr2L 13761780 intron TM9SF4 + chr2L 13762358 intron TM9SF4 + chr2L 13762936 intron TM9SF4 + chr2L_19_13760001 chr2L_13760001 RAL-303_100b 795 chr2L 13761802 13761836 chr2L 13762914 13762972 Doc 40 1134 13.0 14.0 13.5 2.8 1170 chr2L 13761802 intron TM9SF4 + chr2L 13762387 intron TM9SF4 + chr2L 13762972 intron TM9SF4 + chr2L_40_13760001 chr2L_13760001 RAL-303_100b 796 chr2L 13800161 13800203 chr2L 13800290 13800332 18 128 26.5 40.0 33.2 0.5 171 chr2L 13800161 intergenic Sec71 + chr2L 13800246 intergenic not near genes chr2L 13800332 intergenic not near genes chr2L_18_13800001 chr2L_13800001 RAL-303_100b 797 chr2L 13842109 13842165 chr2L 13842218 13842274 29 108 41.0 36.5 38.8 0.7 165 chr2L 13842109 intron CenG1A + chr2L 13842192 intron CenG1A + chr2L 13842274 intron CenG1A + chr2L_29_13840001 chr2L_13840001 RAL-303_100b 798 chr2L 13842550 13842591 chr2L 13842652 13842690 22 102 31.5 38.5 35.0 0.6 140 chr2L 13842550 intron CenG1A + chr2L 13842620 intron CenG1A + chr2L 13842690 intron CenG1A + chr2L_22_13840001 chr2L_13840001 RAL-303_100b 799 chr2L 13853063 13853113 chr2L 13862238 13862288 roo 57 9173 11.0 18.5 14.8 3.6 9225 chr2L 13853063 intron CenG1A + chr2L 13857676 intron CenG1A + chr2L 13862288 intron CenG1A + chr2L_57_13855001 chr2L_13855001 RAL-303_100b 800 chr2L 3740589 3740625 chr2L 13890015 13890016 4 10149408 61.5 38.5 50.0 0.1 10149427 chr2L 3740589 intron CG10019 + chr2L 8815302 intergenic not near genes chr2L 13890016 intron CenG1A + chr2L_4_8815001 chr2L_8815001 RAL-303_100b 801 chr2L 13952127 13952183 chr2L 13952234 13952283 20 106 14.5 3.5 9.0 2.0 156 chr2L 13952127 intron Ance-3 + chr2L 13952205 intron Ance-3 + chr2L 13952283 intron Ance-3 + chr2L_20_13950001 chr2L_13950001 RAL-303_100b 802 chr2L 13981493 13981553 chr2L 13981609 13981634 54 114 9.5 14.5 12.0 4.2 141 chr2L 13981493 exon NimC2 + chr2L 13981564 intron NimC2 + chr2L 13981634 intron NimC2 + chr2L_54_13980001 chr2L_13980001 RAL-303_100b 803 chr2L 14102838 14102855 chr2L 14102944 14102950 8 105 32.0 15.5 23.8 0.3 112 chr2L 14102838 intergenic not near genes chr2L 14102894 intergenic not near genes chr2L 14102950 intergenic not near genes chr2L_8_14100001 chr2L_14100001 RAL-303_100b 804 chr2L 14121754 14121765 chr2L 14121861 14121872 5 106 67.0 54.5 60.8 0.1 118 chr2L 14121754 intergenic not near genes chr2L 14121813 intergenic not near genes chr2L 14121872 intergenic not near genes chr2L_5_14120001 chr2L_14120001 RAL-303_100b 805 chr2L 14121771 14121809 chr2L 14121858 14121914 16 102 49.5 54.0 51.8 0.3 143 chr2L 14121771 intergenic not near genes chr2L 14121842 intergenic not near genes chr2L 14121914 intergenic not near genes chr2L_16_14120001 chr2L_14120001 RAL-303_100b 806 chr2L 14151566 14151627 chr2L 14151669 14151730 23 98 11.0 14.5 12.8 1.7 164 chr2L 14151566 intron CG17341 + chr2L 14151648 intron CG17341 + chr2L 14151730 intron CG17341 + chr2L_23_14150001 chr2L_14150001 RAL-303_100b 807 chr2L 14152549 14152605 chr2L 14152665 14152714 11 114 9.5 1.0 5.2 1.8 165 chr2L 14152549 intron CG17341 + chr2L 14152632 intron CG17341 + chr2L 14152714 intron CG17341 + chr2L_11_14150001 chr2L_14150001 RAL-303_100b 808 chr2L 14160660 14160718 chr2L 14160771 14160829 49 109 5.0 10.0 7.5 5.8 169 chr2L 14160660 intergenic CG17341 +,CG43332 - chr2L 14160744 intergenic CG17341 +,CG43332 - chr2L 14160829 intergenic CG17341 +,CG43332 - chr2L_49_14160001 chr2L_14160001 RAL-303_100b 809 chr2L 14162255 14162442 chr2L 14162126 14162268 15 133 1.0 7.5 4.2 2.9 13 chr2L 14162255 exon CG43332 - chr2L 14162262 exon CG43332 - chr2L 14162268 exon CG43332 - chr2L_15_14160001 chr2L_14160001 RAL-303_100b 810 chr2L 14180040 14180094 chr2L 14180141 14180195 37 99 54.5 49.5 52.0 0.7 155 chr2L 14180040 intron CG43333 - chr2L 14180118 intron CG43333 - chr2L 14180195 intron CG43333 - chr2L_37_14180001 chr2L_14180001 RAL-303_100b 811 chr2L 14290075 14290130 chr2L 14290182 14290237 21 106 41.5 43.0 42.2 0.5 162 chr2L 14290075 intron wb + chr2L 14290156 intron wb + chr2L 14290237 intron wb + chr2L_21_14290001 chr2L_14290001 RAL-303_100b 812 chr2L 14337041 14337094 chr2L 14337149 14337207 37 109 52.5 58.0 55.2 0.7 166 chr2L 14337041 intron CG33090 + chr2L 14337124 intron CG33090 + chr2L 14337207 intron CG33090 + chr2L_37_14335001 chr2L_14335001 RAL-303_100b 813 chr2L 14378625 14378660 chr2L 14378729 14378764 19 103 48.5 34.0 41.2 0.5 139 chr2L 14378625 3` UTR ppk - chr2L 14378694 3` UTR ppk - chr2L 14378764 3` UTR ppk - chr2L_19_14375001 chr2L_14375001 RAL-303_100b 814 chr2L 14452421 14452465 chr2L 14452556 14452600 20 134 34.5 25.5 30.0 0.6 179 chr2L 14452421 intergenic not near genes chr2L 14452510 intergenic not near genes chr2L 14452600 intergenic not near genes chr2L_20_14450001 chr2L_14450001 RAL-303_100b 815 chr2L 14462706 14462821 chr2L 14462818 14462942 5 117 26.5 27.5 27.0 0.2 236 chr2L 14462706 intergenic not near genes chr2L 14462824 intergenic not near genes chr2L 14462942 intergenic not near genes chr2L_5_14460001 chr2L_14460001 RAL-303_100b 816 chr2L 14465587 14465616 chr2L 14469089 14469108 hopper2 6 3500 10.5 30.0 20.2 0.3 3521 chr2L 14465587 intergenic not near genes chr2L 14467348 intergenic not near genes chr2L 14469108 intergenic not near genes chr2L_6_14465001 chr2L_14465001 RAL-303_100b 817 chr2L 14472022 14472060 chr2L 14472123 14472161 19 100 33.0 35.0 34.0 0.5 139 chr2L 14472022 intergenic not near genes chr2L 14472092 intergenic not near genes chr2L 14472161 intergenic not near genes chr2L_19_14470001 chr2L_14470001 RAL-303_100b 818 chr2L 14503415 14503422 chr2L 14503519 14503526 7 104 37.0 38.0 37.5 0.2 111 chr2L 14503415 intergenic not near genes chr2L 14503470 intergenic not near genes chr2L 14503526 intergenic not near genes chr2L_7_14500001 chr2L_14500001 RAL-303_100b 819 chr2L 14503423 14503435 chr2L 14503517 14503539 6 100 34.0 36.5 35.2 0.2 116 chr2L 14503423 intergenic not near genes chr2L 14503481 intergenic not near genes chr2L 14503539 intergenic not near genes chr2L_6_14500001 chr2L_14500001 RAL-303_100b 820 chr2L 14525545 14525604 chr2L 14525652 14525702 48 106 12.5 15.0 13.8 3.2 157 chr2L 14525545 exon CG33648 + chr2L 14525624 exon CG33648 + chr2L 14525702 intergenic CG33648 + chr2L_48_14525001 chr2L_14525001 RAL-303_100b 821 chr2L 14547091 14547141 chr2L 14547199 14547222 56 102 25.0 19.0 22.0 2.4 131 chr2L 14547091 intergenic CG4218 - chr2L 14547156 intergenic CG4218 - chr2L 14547222 intergenic CG4218 - chr2L_56_14545001 chr2L_14545001 RAL-303_100b 822 chr2L 14547142 14547151 chr2L 14547198 14547239 8 87 19.5 19.0 19.2 0.4 97 chr2L 14547142 intergenic CG4218 - chr2L 14547190 intergenic CG4218 - chr2L 14547239 intergenic CG4218 - chr2L_8_14545001 chr2L_14545001 RAL-303_100b 823 chr2L 14588360 14588420 chr2L 14588539 14588599 68 176 14.0 14.5 14.2 4.5 239 chr2L 14588360 intergenic CG42680 - chr2L 14588480 intergenic CG42680 - chr2L 14588599 intergenic CG42680 - chr2L_68_14585001 chr2L_14585001 RAL-303_100b 824 chr2L 14588651 14588665 chr2L 14588967 14588981 5 313 15.5 12.0 13.8 0.3 330 chr2L 14588651 intergenic CG42680 - chr2L 14588816 intergenic not near genes chr2L 14588981 intergenic not near genes chr2L_5_14585001 chr2L_14585001 RAL-303_100b 825 chr2L 14601950 14602003 chr2L 14602059 14602112 49 106 12.5 13.5 13.0 3.5 162 chr2L 14601950 exon osp - chr2L 14602031 intron osp - chr2L 14602112 exon osp - chr2L_49_14600001 chr2L_14600001 RAL-303_100b 826 chr2L 14614074 14614086 chr2L 14614261 14614315 11 191 61.5 48.0 54.8 0.2 241 chr2L 14614074 intron osp - chr2L 14614194 intron osp - chr2L 14614315 intron osp - chr2L_11_14610001 chr2L_14610001 RAL-303_100b 827 chr2L 14642550 14642601 chr2L 14651733 14651789 roo 28 9186 14.0 14.0 14.0 1.9 9239 chr2L 14642550 intron osp - chr2L 14647170 intron osp - chr2L 14651789 intron osp - chr2L_28_14645001 chr2L_14645001 RAL-303_100b 828 chr2L 14681780 14681831 chr2L 14682009 14682057 15 225 44.5 36.0 40.2 0.4 277 chr2L 14681780 intron osp - chr2L 14681918 intron osp - chr2L 14682057 intron osp - chr2L_15_14680001 chr2L_14680001 RAL-303_100b 829 chr2L 14703755 14703812 chr2L 14703857 14703914 30 100 49.0 46.0 47.5 0.6 159 chr2L 14703755 intergenic not near genes chr2L 14703834 intergenic not near genes chr2L 14703914 intergenic not near genes chr2L_30_14700001 chr2L_14700001 RAL-303_100b 830 chr2L 14707190 14707240 chr2L 14707334 14707384 39 141 14.5 0.5 7.5 4.6 194 chr2L 14707190 intergenic not near genes chr2L 14707287 intergenic not near genes chr2L 14707384 intergenic not near genes chr2L_39_14705001 chr2L_14705001 RAL-303_100b 831 chr2L 14726559 14726578 chr2L 14726666 14726685 9 107 28.0 33.5 30.8 0.3 126 chr2L 14726559 intron CG42685 - chr2L 14726622 intron CG42685 - chr2L 14726685 intron CG42685 - chr2L_9_14725001 chr2L_14725001 RAL-303_100b 832 chr2L 14768924 14768958 chr2L 14769009 14769061 13 98 39.5 46.0 42.8 0.3 137 chr2L 14768924 intergenic not near genes chr2L 14768992 intergenic not near genes chr2L 14769061 intergenic not near genes chr2L_13_14765001 chr2L_14765001 RAL-303_100b 833 chr2L 14787106 14787117 chr2L 14787207 14787218 6 100 33.5 21.5 27.5 0.2 112 chr2L 14787106 intergenic not near genes chr2L 14787162 intergenic not near genes chr2L 14787218 intergenic not near genes chr2L_6_14785001 chr2L_14785001 RAL-303_100b 834 chr2L 14803855 14803911 chr2L 14809083 14809138 copia 27 5225 32.5 36.5 34.5 0.8 5283 chr2L 14803855 intergenic not near genes chr2L 14806496 intergenic not near genes chr2L 14809138 intergenic not near genes chr2L_27_14805001 chr2L_14805001 RAL-303_100b 835 chr2L 14839731 14839741 chr2L 14839832 14839842 5 101 42.5 39.0 40.8 0.1 111 chr2L 14839731 intergenic not near genes chr2L 14839786 intergenic not near genes chr2L 14839842 intergenic not near genes chr2L_5_14835001 chr2L_14835001 RAL-303_100b 836 chr2L 14839744 14839760 chr2L 14839831 14839861 7 99 37.5 38.5 38.0 0.2 117 chr2L 14839744 intergenic not near genes chr2L 14839802 intergenic not near genes chr2L 14839861 intergenic not near genes chr2L_7_14835001 chr2L_14835001 RAL-303_100b 837 chr2L 14839761 14839777 chr2L 14839829 14839878 13 98 37.5 37.5 37.5 0.3 117 chr2L 14839761 intergenic not near genes chr2L 14839820 intergenic not near genes chr2L 14839878 intergenic not near genes chr2L_13_14835001 chr2L_14835001 RAL-303_100b 838 chr2L 14840949 14841008 chr2L 14841062 14841120 40 111 10.5 9.0 9.8 3.7 171 chr2L 14840949 3` UTR CR43805 - chr2L 14841034 3` UTR CR43805 - chr2L 14841120 3` UTR CR43805 - chr2L_40_14840001 chr2L_14840001 RAL-303_100b 839 chr2L 14887665 14887699 chr2L 14887768 14887802 17 101 9.5 11.0 10.2 1.5 137 chr2L 14887665 intergenic not near genes chr2L 14887734 intergenic not near genes chr2L 14887802 intergenic not near genes chr2L_17_14885001 chr2L_14885001 RAL-303_100b 840 chr2L 14889928 14889982 chr2L 14890378 14890426 jockey 53 449 12.5 11.0 11.8 4.1 498 chr2L 14889928 intergenic not near genes chr2L 14890177 intergenic not near genes chr2L 14890426 intergenic not near genes chr2L_53_14890001 chr2L_14890001 RAL-303_100b 841 chr2L 14984360 14984402 chr2L 14991987 14992032 opus 23 7624 22.5 21.0 21.8 1.0 7672 chr2L 14984360 intron mol - chr2L 14988196 intron mol - chr2L 14992032 intron mol - chr2L_23_14985001 chr2L_14985001 RAL-303_100b 842 chr2L 15000855 15000913 chr2L 15000956 15001014 25 105 83.5 79.5 81.5 0.3 159 chr2L 15000855 intergenic not near genes chr2L 15000934 intergenic not near genes chr2L 15001014 intergenic not near genes chr2L_25_15000001 chr2L_15000001 RAL-303_100b 843 chr2L 15013129 15013178 chr2L 15013258 15013312 10 128 15.0 32.5 23.8 0.4 183 chr2L 15013129 intergenic CR43856 - chr2L 15013220 intergenic not near genes chr2L 15013312 intergenic not near genes chr2L_10_15010001 chr2L_15010001 RAL-303_100b 844 chr2L 15021421 15021473 chr2L 15021522 15021574 16 100 38.0 33.0 35.5 0.4 153 chr2L 15021421 intron GABA-B-R1 + chr2L 15021498 intron GABA-B-R1 + chr2L 15021574 intron GABA-B-R1 + chr2L_16_15020001 chr2L_15020001 RAL-303_100b 845 chr2L 15023937 15023988 chr2L 15024043 15024094 13 105 23.0 19.5 21.2 0.6 157 chr2L 15023937 intron GABA-B-R1 + chr2L 15024016 intron GABA-B-R1 + chr2L 15024094 intron GABA-B-R1 + chr2L_13_15020001 chr2L_15020001 RAL-303_100b 846 chr2L 15025994 15026052 chr2L 15026100 15026158 30 102 42.5 40.5 41.5 0.7 164 chr2L 15025994 exon GABA-B-R1 + chr2L 15026076 intron GABA-B-R1 + chr2L 15026158 exon GABA-B-R1 + chr2L_30_15025001 chr2L_15025001 RAL-303_100b 847 chr2L 15044697 15044727 chr2L 15044798 15044828 27 101 18.0 0.5 9.2 2.6 131 chr2L 15044697 intergenic ck - chr2L 15044762 intergenic ck - chr2L 15044828 intergenic ck - chr2L_27_15040001 chr2L_15040001 RAL-303_100b 848 chr2L 15078043 15078096 chr2L 15078156 15078209 22 111 41.5 39.5 40.5 0.5 166 chr2L 15078043 intron CG15270 + chr2L 15078126 intron CG15270 + chr2L 15078209 intron CG15270 + chr2L_22_15075001 chr2L_15075001 RAL-303_100b 849 chr2L 15080880 15080934 chr2L 15080998 15081054 22 118 40.5 34.5 37.5 0.6 174 chr2L 15080880 intron CG15270 + chr2L 15080967 intron CG15270 + chr2L 15081054 intron CG15270 + chr2L_22_15080001 chr2L_15080001 RAL-303_100b 850 chr2L 15098524 15098542 chr2L 15098624 15098625 7 101 28.5 30.0 29.2 0.2 101 chr2L 15098524 intergenic not near genes chr2L 15098574 intergenic not near genes chr2L 15098625 intergenic not near genes chr2L_7_15095001 chr2L_15095001 RAL-303_100b 851 chr2L 15103836 15103845 chr2L 15103958 15103967 4 122 28.0 22.0 25.0 0.2 131 chr2L 15103836 intergenic not near genes chr2L 15103902 intergenic not near genes chr2L 15103967 intergenic not near genes chr2L_4_15100001 chr2L_15100001 RAL-303_100b 852 chr2L 15103847 15103868 chr2L 15103957 15103981 16 120 28.5 22.0 25.2 0.6 134 chr2L 15103847 intergenic not near genes chr2L 15103914 intergenic not near genes chr2L 15103981 intergenic not near genes chr2L_16_15100001 chr2L_15100001 RAL-303_100b 853 chr2L 15111923 15111954 chr2L 15112047 15112088 8 128 41.5 41.5 41.5 0.2 165 chr2L 15111923 intron CG15269 + chr2L 15112006 intron CG15269 + chr2L 15112088 intron CG15269 + chr2L_8_15110001 chr2L_15110001 RAL-303_100b 854 chr2L 15137750 15137791 chr2L 15137859 15137870 5 103 35.0 14.0 24.5 0.2 120 chr2L 15137750 intergenic not near genes chr2L 15137810 intergenic not near genes chr2L 15137870 intergenic not near genes chr2L_5_15135001 chr2L_15135001 RAL-303_100b 855 chr2L 15138750 15139002 chr2L 15138858 15139115 21 108 16.5 35.5 26.0 0.8 365 chr2L 15138750 intergenic not near genes chr2L 15138932 intergenic not near genes chr2L 15139115 intergenic not near genes chr2L_21_15135001 chr2L_15135001 RAL-303_100b 856 chr2L 15195361 15195416 chr2L 15195491 15195545 18 123 47.0 41.5 44.2 0.4 184 chr2L 15195361 intron CG4168 - chr2L 15195453 intron CG4168 - chr2L 15195545 intron CG4168 - chr2L_18_15195001 chr2L_15195001 RAL-303_100b 857 chr2L 15216099 15216111 chr2L 15216238 15216250 6 139 14.5 1.0 7.8 0.7 151 chr2L 15216099 3` UTR CG43230 + chr2L 15216174 intergenic CG43230 + chr2L 15216250 intergenic CG43230 + chr2L_6_15215001 chr2L_15215001 RAL-303_100b 858 chr2L 15220218 15220473 chr2L 15220320 15220605 17 130 29.0 17.5 23.2 0.7 387 chr2L 15220218 intergenic not near genes chr2L 15220412 intergenic not near genes chr2L 15220605 intergenic not near genes chr2L_17_15220001 chr2L_15220001 RAL-303_100b 859 chr2L 15226346 15226396 chr2L 15226447 15226497 18 98 33.0 35.5 34.2 0.5 151 chr2L 15226346 intergenic not near genes chr2L 15226422 intergenic not near genes chr2L 15226497 intergenic not near genes chr2L_18_15225001 chr2L_15225001 RAL-303_100b 860 chr2L 15307943 15307986 chr2L 15308044 15308087 18 100 17.0 24.0 20.5 0.8 144 chr2L 15307943 intergenic not near genes chr2L 15308015 intergenic not near genes chr2L 15308087 intergenic not near genes chr2L_18_15305001 chr2L_15305001 RAL-303_100b 861 chr2L 15313016 15313038 chr2L 15313130 15313152 7 113 27.0 33.0 30.0 0.2 136 chr2L 15313016 intergenic not near genes chr2L 15313084 intergenic not near genes chr2L 15313152 intergenic not near genes chr2L_7_15310001 chr2L_15310001 RAL-303_100b 862 chr2L 15318918 15318982 chr2L 15319035 15319084 9 109 6.5 20.5 13.5 0.6 166 chr2L 15318918 intergenic nht - chr2L 15319001 intergenic nht - chr2L 15319084 intergenic nht - chr2L_9_15315001 chr2L_15315001 RAL-303_100b 863 chr2L 15346059 15346064 chr2L 15347434 15347439 4 1375 40.0 43.0 41.5 0.1 1380 chr2L 15346059 intergenic not near genes chr2L 15346749 intergenic not near genes chr2L 15347439 intergenic not near genes chr2L_4_15345001 chr2L_15345001 RAL-303_100b 864 chr2L 15355689 15355746 chr2L 15355792 15355849 23 103 31.5 34.0 32.8 0.7 160 chr2L 15355689 intergenic not near genes chr2L 15355769 intergenic not near genes chr2L 15355849 intergenic not near genes chr2L_23_15355001 chr2L_15355001 RAL-303_100b 865 chr2L 15375794 15375833 chr2L 15375931 15375970 8 137 16.0 16.5 16.2 0.5 176 chr2L 15375794 intergenic not near genes chr2L 15375882 intergenic not near genes chr2L 15375970 intergenic not near genes chr2L_8_15375001 chr2L_15375001 RAL-303_100b 866 chr2L 15387349 15387405 chr2L 15387454 15387510 10 105 43.0 36.0 39.5 0.2 161 chr2L 15387349 intergenic not near genes chr2L 15387430 intergenic not near genes chr2L 15387510 intergenic not near genes chr2L_10_15385001 chr2L_15385001 RAL-303_100b 867 chr2L 15411944 15411986 chr2L 15412056 15412078 23 110 34.5 35.0 34.8 0.6 134 chr2L 15411944 intergenic not near genes chr2L 15412011 intergenic not near genes chr2L 15412078 intergenic not near genes chr2L_23_15410001 chr2L_15410001 RAL-303_100b 868 chr2L 15421792 15421828 chr2L 15421943 15421967 13 149 38.0 38.5 38.2 0.3 175 chr2L 15421792 intergenic not near genes chr2L 15421880 intergenic not near genes chr2L 15421967 intergenic not near genes chr2L_13_15420001 chr2L_15420001 RAL-303_100b 869 chr2L 15427271 15427279 chr2L 15427482 15427490 4 211 63.0 26.0 44.5 0.1 219 chr2L 15427271 intergenic not near genes chr2L 15427380 intergenic not near genes chr2L 15427490 intergenic not near genes chr2L_4_15425001 chr2L_15425001 RAL-303_100b 870 chr2L 15427281 15427313 chr2L 15427465 15427524 18 209 49.5 24.5 37.0 0.5 243 chr2L 15427281 intergenic not near genes chr2L 15427402 intergenic not near genes chr2L 15427524 intergenic not near genes chr2L_18_15425001 chr2L_15425001 RAL-303_100b 871 chr2L 15444402 15444431 chr2L 15444515 15444544 12 111 24.0 19.5 21.8 0.5 142 chr2L 15444402 intergenic not near genes chr2L 15444473 intergenic not near genes chr2L 15444544 intergenic not near genes chr2L_12_15440001 chr2L_15440001 RAL-303_100b 872 chr2L 15446024 15446083 chr2L 15453518 15453553 blood 46 7492 15.0 5.5 10.2 4.1 7529 chr2L 15446024 intergenic not near genes chr2L 15449788 intergenic not near genes chr2L 15453553 intergenic not near genes chr2L_46_15445001 chr2L_15445001 RAL-303_100b 873 chr2L 15454275 15454323 chr2L 15454389 15454417 16 109 36.0 34.0 35.0 0.4 142 chr2L 15454275 intergenic not near genes chr2L 15454346 intergenic not near genes chr2L 15454417 intergenic not near genes chr2L_16_15450001 chr2L_15450001 RAL-303_100b 874 chr2L 15458253 15458288 chr2L 15458366 15458401 11 113 4.5 7.5 6.0 1.6 148 chr2L 15458253 intergenic not near genes chr2L 15458327 intergenic not near genes chr2L 15458401 intergenic not near genes chr2L_11_15455001 chr2L_15455001 RAL-303_100b 875 chr2L 15482554 15482604 chr2L 15482715 15482765 7 161 40.5 15.5 28.0 0.2 211 chr2L 15482554 intergenic not near genes chr2L 15482660 intergenic not near genes chr2L 15482765 intergenic not near genes chr2L_7_15480001 chr2L_15480001 RAL-303_100b 876 chr2L 15490026 15490044 chr2L 15490167 15490185 11 141 17.0 22.5 19.8 0.5 159 chr2L 15490026 intergenic not near genes chr2L 15490106 intergenic not near genes chr2L 15490185 intergenic not near genes chr2L_11_15490001 chr2L_15490001 RAL-303_100b 877 chr2L 15499886 15499939 chr2L 15499999 15500051 19 112 34.5 41.5 38.0 0.5 165 chr2L 15499886 intron lace + chr2L 15499968 intron lace + chr2L 15500051 intron lace + chr2L_19_15495001 chr2L_15495001 RAL-303_100b 878 chr2L 15500636 15500657 chr2L 15506123 15506144 8 5488 57.0 113.5 85.2 0.1 5508 chr2L 15500636 intron lace + chr2L 15503390 exon lace + chr2L 15506144 intergenic not near genes chr2L_8_15500001 chr2L_15500001 RAL-303_100b 879 chr2L 15500635 15500686 chr2L 15506149 15506172 11 5491 58.5 99.0 78.8 0.1 5537 chr2L 15500635 intron lace + chr2L 15503404 exon lace + chr2L 15506172 intergenic not near genes chr2L_11_15500001 chr2L_15500001 RAL-303_100b 880 chr2L 15510909 15510967 chr2L 15511028 15511062 30 116 45.5 42.5 44.0 0.7 153 chr2L 15510909 intergenic not near genes chr2L 15510986 intergenic not near genes chr2L 15511062 intergenic not near genes chr2L_30_15510001 chr2L_15510001 RAL-303_100b 881 chr2L 15514298 15514308 chr2L 15514407 15514417 11 109 25.5 31.0 28.2 0.4 119 chr2L 15514298 intergenic not near genes chr2L 15514358 intergenic not near genes chr2L 15514417 intergenic not near genes chr2L_11_15510001 chr2L_15510001 RAL-303_100b 882 chr2L 15514311 15514328 chr2L 15514388 15514437 19 105 21.5 28.0 24.8 0.7 126 chr2L 15514311 intergenic not near genes chr2L 15514374 intergenic not near genes chr2L 15514437 intergenic not near genes chr2L_19_15510001 chr2L_15510001 RAL-303_100b 883 chr2L 15527077 15527098 chr2L 15527389 15527410 7 306 32.5 31.5 32.0 0.2 333 chr2L 15527077 intergenic not near genes chr2L 15527244 intergenic not near genes chr2L 15527410 intergenic not near genes chr2L_7_15525001 chr2L_15525001 RAL-303_100b 884 chr2L 15527099 15527124 chr2L 15527387 15527436 15 308 29.5 31.5 30.5 0.5 337 chr2L 15527099 intergenic not near genes chr2L 15527268 intergenic not near genes chr2L 15527436 intergenic not near genes chr2L_15_15525001 chr2L_15525001 RAL-303_100b 885 chr2L 15535858 15535916 chr2L 15535973 15536031 24 110 38.0 35.0 36.5 0.6 173 chr2L 15535858 intergenic not near genes chr2L 15535944 intergenic not near genes chr2L 15536031 intergenic not near genes chr2L_24_15535001 chr2L_15535001 RAL-303_100b 886 chr2L 15541047 15541070 chr2L 15541172 15541190 11 122 42.5 35.0 38.8 0.3 143 chr2L 15541047 intergenic not near genes chr2L 15541118 intergenic not near genes chr2L 15541190 intergenic not near genes chr2L_11_15540001 chr2L_15540001 RAL-303_100b 887 chr2L 15541081 15541103 chr2L 15541171 15541222 5 117 39.0 35.0 37.0 0.1 141 chr2L 15541081 intergenic not near genes chr2L 15541152 intergenic not near genes chr2L 15541222 intergenic not near genes chr2L_5_15540001 chr2L_15540001 RAL-303_100b 888 chr2L 15586389 15586438 chr2L 15593466 15593515 297 33 7076 9.5 16.5 13.0 2.4 7126 chr2L 15586389 intergenic not near genes chr2L 15589952 intergenic not near genes chr2L 15593515 intergenic not near genes chr2L_33_15585001 chr2L_15585001 RAL-303_100b 889 chr2L 15598744 15598795 chr2L 15598848 15598899 28 103 13.0 1.5 7.2 3.4 155 chr2L 15598744 intergenic not near genes chr2L 15598822 intergenic not near genes chr2L 15598899 intergenic not near genes chr2L_28_15595001 chr2L_15595001 RAL-303_100b 890 chr2L 15626352 15626394 chr2L 15626441 15626480 19 95 38.0 39.0 38.5 0.5 128 chr2L 15626352 intergenic not near genes chr2L 15626416 intergenic not near genes chr2L 15626480 intergenic not near genes chr2L_19_15625001 chr2L_15625001 RAL-303_100b 891 chr2L 15628392 15628399 chr2L 15628487 15628500 9 98 0.0 18.5 9.2 0.9 108 chr2L 15628392 intergenic CG7631 + chr2L 15628446 intergenic CG7631 + chr2L 15628500 intergenic CG7631 + chr2L_9_15625001 chr2L_15625001 RAL-303_100b 892 chr2L 15628400 15628409 chr2L 15628484 15628510 9 99 0.0 17.0 8.5 0.9 110 chr2L 15628400 intergenic CG7631 + chr2L 15628455 intergenic CG7631 + chr2L 15628510 intergenic CG7631 + chr2L_9_15625001 chr2L_15625001 RAL-303_100b 893 chr2L 15636651 15636696 chr2L 15636752 15636797 14 101 27.5 24.0 25.8 0.5 146 chr2L 15636651 intergenic not near genes chr2L 15636724 intergenic not near genes chr2L 15636797 intergenic not near genes chr2L_14_15635001 chr2L_15635001 RAL-303_100b 894 chr2L 15736950 15737004 chr2L 15737060 15737076 32 105 39.5 46.5 43.0 0.7 126 chr2L 15736950 intron CycE - chr2L 15737013 intron CycE - chr2L 15737076 intron CycE - chr2L_32_15735001 chr2L_15735001 RAL-303_100b 895 chr2L 15750004 15750011 chr2L 15750142 15750149 4 138 7.0 0.0 3.5 0.9 145 chr2L 15750004 intron l(2)35Di - chr2L 15750076 intron l(2)35Di - chr2L 15750149 intron l(2)35Di - chr2L_4_15750001 chr2L_15750001 RAL-303_100b 896 chr2L 15768401 15768435 chr2L 15768508 15768542 11 106 30.0 38.0 34.0 0.3 141 chr2L 15768401 intergenic wek -,Ku80 - chr2L 15768472 intergenic wek -,Ku80 - chr2L 15768542 intergenic Ku80 -,wek - chr2L_11_15765001 chr2L_15765001 RAL-303_100b 897 chr2L 15773548 15773585 chr2L 15773654 15773691 INE-1 17 105 32.0 46.0 39.0 0.4 143 chr2L 15773548 intergenic CG31826 - chr2L 15773620 intergenic not near genes chr2L 15773691 intergenic not near genes chr2L_17_15770001 chr2L_15770001 RAL-303_100b 898 chr2L 15776393 15776414 chr2L 15776498 15776534 12 116 42.0 45.5 43.8 0.3 141 chr2L 15776393 intergenic CG43760 - chr2L 15776464 3` UTR CG43760 - chr2L 15776534 exon CG43760 - chr2L_12_15775001 chr2L_15775001 RAL-303_100b 899 chr2L 15777802 15777830 chr2L 15778013 15778041 13 209 46.0 55.5 50.8 0.3 239 chr2L 15777802 intergenic not near genes chr2L 15777922 intergenic not near genes chr2L 15778041 intergenic not near genes chr2L_13_15775001 chr2L_15775001 RAL-303_100b 900 chr2L 15790162 15790215 chr2L 15790263 15790316 25 100 41.0 45.0 43.0 0.6 154 chr2L 15790162 intergenic CG18109 + chr2L 15790239 intergenic CG18109 + chr2L 15790316 intergenic CG18109 + chr2L_25_15790001 chr2L_15790001 RAL-303_100b 901 chr2L 15823325 15823370 chr2L 15823426 15823470 43 100 14.5 7.0 10.8 3.6 145 chr2L 15823325 intergenic CR44601 - chr2L 15823398 intergenic CR44601 - chr2L 15823470 intergenic not near genes chr2L_43_15820001 chr2L_15820001 RAL-303_100b 902 chr2L 15826869 15826893 chr2L 15829288 15829312 Tabor 38 2418 9.0 27.5 18.2 2.0 2443 chr2L 15826869 intergenic not near genes chr2L 15828090 intergenic not near genes chr2L 15829312 intergenic not near genes chr2L_38_15825001 chr2L_15825001 RAL-303_100b 903 chr2L 15871259 15871317 chr2L 15871367 15871425 25 106 35.5 34.0 34.8 0.7 166 chr2L 15871259 intergenic not near genes chr2L 15871342 intergenic not near genes chr2L 15871425 intergenic not near genes chr2L_25_15870001 chr2L_15870001 RAL-303_100b 904 chr2L 15887691 15887745 chr2L 15887849 15887903 35 157 44.5 33.5 39.0 0.9 212 chr2L 15887691 intergenic not near genes chr2L 15887797 intergenic not near genes chr2L 15887903 intergenic not near genes chr2L_35_15885001 chr2L_15885001 RAL-303_100b 905 chr2L 15906155 15906214 chr2L 15906269 15906326 33 112 39.5 37.5 38.5 0.8 171 chr2L 15906155 intron beat-Ib - chr2L 15906240 intron beat-Ib - chr2L 15906326 exon beat-Ib - chr2L_33_15905001 chr2L_15905001 RAL-303_100b 906 chr2L 15921796 15921827 chr2L 15921964 15921995 12 167 39.5 40.5 40.0 0.3 199 chr2L 15921796 intron beat-Ib - chr2L 15921896 intron beat-Ib - chr2L 15921995 intron beat-Ib - chr2L_12_15920001 chr2L_15920001 RAL-303_100b 907 chr2L 15933547 15933602 chr2L 15936110 15936165 29 2560 65.0 59.0 62.0 0.5 2618 chr2L 15933547 intron beat-Ib - chr2L 15934856 intron beat-Ib - chr2L 15936165 intron beat-Ib - chr2L_29_15930001 chr2L_15930001 RAL-303_100b 908 chr2L 15935174 15935216 chr2L 15935288 15935331 16 112 35.0 34.5 34.8 0.4 157 chr2L 15935174 intron beat-Ib - chr2L 15935252 intron beat-Ib - chr2L 15935331 intron beat-Ib - chr2L_16_15935001 chr2L_15935001 RAL-303_100b 909 chr2L 15933218 15933268 chr2L 15936098 15936148 29 2882 91.0 58.5 74.8 0.4 2930 chr2L 15933218 intron beat-Ib - chr2L 15934683 intron beat-Ib - chr2L 15936148 intron beat-Ib - chr2L_29_15930001 chr2L_15930001 RAL-303_100b 910 chr2L 15947128 15947190 chr2L 15947235 15947245 33 100 53.0 44.5 48.8 0.7 117 chr2L 15947128 intron beat-Ib - chr2L 15947186 intron beat-Ib - chr2L 15947245 intron beat-Ib - chr2L_33_15945001 chr2L_15945001 RAL-303_100b 911 chr2L 15950366 15950408 chr2L 15950469 15950511 21 100 25.0 24.0 24.5 0.8 145 chr2L 15950366 intron beat-Ib - chr2L 15950438 intron beat-Ib - chr2L 15950511 intron beat-Ib - chr2L_21_15950001 chr2L_15950001 RAL-303_100b 912 chr2L 15955998 15956031 chr2L 15957490 15957503 hobo 30 1486 32.5 22.5 27.5 1.1 1505 chr2L 15955998 intron beat-Ib - chr2L 15956750 intron beat-Ib - chr2L 15957503 intron beat-Ib - chr2L_30_15955001 chr2L_15955001 RAL-303_100b 913 chr2L 15956032 15956060 chr2L 15957489 15957492 hobo 20 1484 14.0 22.5 18.2 1.0 1460 chr2L 15956032 intron beat-Ib - chr2L 15956762 intron beat-Ib - chr2L 15957492 intron beat-Ib - chr2L_20_15955001 chr2L_15955001 RAL-303_100b 914 chr2L 15960856 15960860 chr2L 15961192 15961206 4 342 47.5 41.5 44.5 0.1 350 chr2L 15960856 intron,5` UTR beat-Ib -,CR43803 + chr2L 15961031 intron,5` UTR beat-Ib -,CR43803 + chr2L 15961206 intron beat-Ib - chr2L_4_15960001 chr2L_15960001 RAL-303_100b 915 chr2L 15971984 15972002 chr2L 15972107 15972125 8 123 26.0 50.0 38.0 0.2 141 chr2L 15971984 intergenic not near genes chr2L 15972054 intergenic not near genes chr2L 15972125 intergenic not near genes chr2L_8_15970001 chr2L_15970001 RAL-303_100b 916 chr2L 16001441 16001493 chr2L 16001554 16001606 48 112 1.0 11.5 6.2 6.7 165 chr2L 16001441 intron beat-Ic + chr2L 16001524 intron beat-Ic + chr2L 16001606 intron beat-Ic + chr2L_48_16000001 chr2L_16000001 RAL-303_100b 917 chr2L 16008677 16008695 chr2L 16008803 16008821 9 125 3.0 6.5 4.8 1.6 144 chr2L 16008677 intron beat-Ic + chr2L 16008749 intron beat-Ic + chr2L 16008821 intron beat-Ic + chr2L_9_16005001 chr2L_16005001 RAL-303_100b 918 chr2L 16012101 16012143 chr2L 16012206 16012248 8 105 24.0 36.5 30.2 0.3 147 chr2L 16012101 intron beat-Ic + chr2L 16012174 intron beat-Ic + chr2L 16012248 intron beat-Ic + chr2L_8_16010001 chr2L_16010001 RAL-303_100b 919 chr2L 16043547 16043594 chr2L 16043657 16043704 20 110 14.5 18.5 16.5 1.1 157 chr2L 16043547 intron,intron BicC +,CG45084 + chr2L 16043626 intron,intron BicC +,CG45084 + chr2L 16043704 intron,intron BicC +,CG45084 + chr2L_20_16040001 chr2L_16040001 RAL-303_100b 920 chr2L 16051587 16051606 chr2L 16051691 16051710 8 104 34.5 37.5 36.0 0.2 123 chr2L 16051587 intron beat-Ia + chr2L 16051648 intron beat-Ia + chr2L 16051710 intron beat-Ia + chr2L_8_16050001 chr2L_16050001 RAL-303_100b 921 chr2L 16051610 16051640 chr2L 16051690 16051744 5 96 33.5 37.5 35.5 0.1 134 chr2L 16051610 intron beat-Ia + chr2L 16051677 intron beat-Ia + chr2L 16051744 intron beat-Ia + chr2L_5_16050001 chr2L_16050001 RAL-303_100b 922 chr2L 16062257 16062314 chr2L 16062594 16062651 29 336 44.0 36.5 40.2 0.7 394 chr2L 16062257 intron beat-Ia + chr2L 16062454 intron beat-Ia + chr2L 16062651 intron beat-Ia + chr2L_29_16060001 chr2L_16060001 RAL-303_100b 923 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 39 145889 66.5 70.0 68.2 0.6 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_39_16140001 chr2L_16140001 RAL-303_100b 924 chr2L 16125126 16125174 chr2L 16125269 16125319 8 141 34.0 45.5 39.8 0.2 193 chr2L 16125126 intergenic not near genes chr2L 16125222 intergenic not near genes chr2L 16125319 intergenic not near genes chr2L_8_16125001 chr2L_16125001 RAL-303_100b 925 chr2L 16141122 16141194 chr2L 16146368 16146426 copia 38 5231 10.0 10.5 10.2 3.4 5304 chr2L 16141122 intergenic not near genes chr2L 16143774 intergenic not near genes chr2L 16146426 intergenic not near genes chr2L_38_16140001 chr2L_16140001 RAL-303_100b 926 chr2L 16153720 16153723 chr2L 16160813 16160816 297 4 7092 38.5 11.5 25.0 0.2 7096 chr2L 16153720 intergenic not near genes chr2L 16157268 intergenic not near genes chr2L 16160816 intergenic not near genes chr2L_4_16155001 chr2L_16155001 RAL-303_100b 927 chr2L 16153724 16153749 chr2L 16160811 16160842 297 25 7093 24.0 10.5 17.2 1.4 7118 chr2L 16153724 intergenic not near genes chr2L 16157283 intergenic not near genes chr2L 16160842 intergenic not near genes chr2L_25_16155001 chr2L_16155001 RAL-303_100b 928 chr2L 16208521 16208533 chr2L 16208904 16208916 10 383 7.0 32.5 19.8 0.5 395 chr2L 16208521 intergenic not near genes chr2L 16208718 intergenic not near genes chr2L 16208916 intergenic not near genes chr2L_10_16205001 chr2L_16205001 RAL-303_100b 929 chr2L 9084336 9084340 chr2L 16217660 16217660 22 7133321 63.5 70.0 66.8 0.3 7133324 chr2L 9084336 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_22_12650001 chr2L_12650001 RAL-303_100b 930 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 26 145889 66.5 70.0 68.2 0.4 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_26_16140001 chr2L_16140001 RAL-303_100b 931 chr2L 16229469 16229517 chr2L 16229959 16230008 26 490 9.0 24.0 16.5 1.5 539 chr2L 16229469 intergenic not near genes chr2L 16229738 intergenic not near genes chr2L 16230008 intergenic not near genes chr2L_26_16225001 chr2L_16225001 RAL-303_100b 932 chr2L 16242048 16242062 chr2L 16242165 16242179 8 117 49.0 35.0 42.0 0.2 131 chr2L 16242048 5` UTR CG42818 + chr2L 16242114 exon CG42818 + chr2L 16242179 exon CG42818 + chr2L_8_16240001 chr2L_16240001 RAL-303_100b 933 chr2L 16242064 16242089 chr2L 16242164 16242206 16 114 41.5 35.0 38.2 0.4 142 chr2L 16242064 5` UTR CG42818 + chr2L 16242135 exon CG42818 + chr2L 16242206 exon CG42818 + chr2L_16_16240001 chr2L_16240001 RAL-303_100b 934 chr2L 16280236 16280286 chr2L 16281429 16281479 1360 45 1193 15.5 16.0 15.8 2.7 1243 chr2L 16280236 intron crp - chr2L 16280858 intron crp - chr2L 16281479 intron crp - chr2L_45_16280001 chr2L_16280001 RAL-303_100b 935 chr2L 16354762 16354786 chr2L 16354868 16354883 25 114 6.5 9.0 7.8 2.8 121 chr2L 16354762 intergenic CaBP1 -,CG4455 + chr2L 16354822 intergenic CaBP1 -,CG4455 + chr2L 16354883 intergenic CaBP1 -,CG4455 + chr2L_25_16350001 chr2L_16350001 RAL-303_100b 936 chr2L 16363919 16363961 chr2L 16364190 16364219 28 270 10.0 15.0 12.5 2.1 300 chr2L 16363919 intergenic not near genes chr2L 16364069 intergenic not near genes chr2L 16364219 intergenic not near genes chr2L_28_16360001 chr2L_16360001 RAL-303_100b 937 chr2L 16365427 16365461 chr2L 16365564 16365598 5 134 14.5 8.0 11.2 0.4 171 chr2L 16365427 intergenic jhamt + chr2L 16365512 intergenic jhamt + chr2L 16365598 intergenic jhamt + chr2L_5_16365001 chr2L_16365001 RAL-303_100b 938 chr2L 16375366 16375400 chr2L 16375482 16375490 6 110 47.0 38.5 42.8 0.1 124 chr2L 16375366 intergenic not near genes chr2L 16375428 intergenic not near genes chr2L 16375490 intergenic not near genes chr2L_6_16375001 chr2L_16375001 RAL-303_100b 939 chr2L 16394911 16394926 chr2L 16395016 16395020 6 102 33.0 44.0 38.5 0.2 109 chr2L 16394911 intergenic not near genes chr2L 16394966 intergenic not near genes chr2L 16395020 intergenic not near genes chr2L_6_16390001 chr2L_16390001 RAL-303_100b 940 chr2L 16394929 16394945 chr2L 16395005 16395056 4 102 33.0 42.5 37.8 0.1 127 chr2L 16394929 intergenic not near genes chr2L 16394992 intergenic not near genes chr2L 16395056 intergenic not near genes chr2L_4_16390001 chr2L_16390001 RAL-303_100b 941 chr2L 16408101 16408155 chr2L 16408231 16408282 7 131 32.0 36.0 34.0 0.2 181 chr2L 16408101 intron CG5888 - chr2L 16408192 intron CG5888 - chr2L 16408282 intron CG5888 - chr2L_7_16405001 chr2L_16405001 RAL-303_100b 942 chr2L 16432581 16432591 chr2L 16432703 16432713 6 122 21.5 30.5 26.0 0.2 132 chr2L 16432581 intron CG5888 - chr2L 16432647 intron CG5888 - chr2L 16432713 intron CG5888 - chr2L_6_16430001 chr2L_16430001 RAL-303_100b 943 chr2L 16432592 16432616 chr2L 16432692 16432738 8 115 22.5 29.0 25.8 0.3 146 chr2L 16432592 intron CG5888 - chr2L 16432665 intron CG5888 - chr2L 16432738 intron CG5888 - chr2L_8_16430001 chr2L_16430001 RAL-303_100b 944 chr2L 16443975 16443977 chr2L 16444067 16444074 4 98 61.5 35.5 48.5 0.1 99 chr2L 16443975 intron CG5888 - chr2L 16444024 intron CG5888 - chr2L 16444074 intron CG5888 - chr2L_4_16440001 chr2L_16440001 RAL-303_100b 945 chr2L 16443979 16444015 chr2L 16444063 16444101 19 96 54.0 41.0 47.5 0.4 122 chr2L 16443979 intron CG5888 - chr2L 16444040 intron CG5888 - chr2L 16444101 intron CG5888 - chr2L_19_16440001 chr2L_16440001 RAL-303_100b 946 chr2L 16458805 16458815 chr2L 16459025 16459036 8 220 41.5 32.5 37.0 0.2 231 chr2L 16458805 intergenic not near genes chr2L 16458920 intergenic not near genes chr2L 16459036 intergenic not near genes chr2L_8_16455001 chr2L_16455001 RAL-303_100b 947 chr2L 16507944 16507967 chr2L 16508042 16508080 17 112 0.0 29.0 14.5 1.1 136 chr2L 16507944 intergenic CG5953 -,Tpr2 + chr2L 16508012 intergenic CG5953 -,Tpr2 + chr2L 16508080 3` UTR CG5953 - chr2L_17_16505001 chr2L_16505001 RAL-303_100b 948 chr2L 16511944 16511993 chr2L 16519083 16519144 HMS-Beagle 38 7144 11.0 4.5 7.8 4.3 7200 chr2L 16511944 intron CG5953 - chr2L 16515544 intron CG5953 - chr2L 16519144 intron CG5953 - chr2L_38_16515001 chr2L_16515001 RAL-303_100b 949 chr2L 16548464 16548483 chr2L 16548611 16548630 9 145 26.0 6.5 16.2 0.5 166 chr2L 16548464 intron CG42389 + chr2L 16548547 intron CG42389 + chr2L 16548630 intron CG42389 + chr2L_9_16545001 chr2L_16545001 RAL-303_100b 950 chr2L 16570158 16570160 chr2L 16570264 16570266 5 106 49.5 35.5 42.5 0.1 108 chr2L 16570158 intron CG42389 + chr2L 16570212 intron CG42389 + chr2L 16570266 intron CG42389 + chr2L_5_16570001 chr2L_16570001 RAL-303_100b 951 chr2L 16589794 16589820 chr2L 16589909 16589935 11 114 20.0 32.0 26.0 0.4 141 chr2L 16589794 intron CG42389 + chr2L 16589864 intron CG42389 + chr2L 16589935 intron CG42389 + chr2L_11_16585001 chr2L_16585001 RAL-303_100b 952 chr2L 16634150 16634157 chr2L 16634387 16634394 6 237 26.0 33.5 29.8 0.2 244 chr2L 16634150 intron CG42389 + chr2L 16634272 intron CG42389 + chr2L 16634394 intron CG42389 + chr2L_6_16630001 chr2L_16630001 RAL-303_100b 953 chr2L 16655011 16655035 chr2L 16655173 16655197 15 161 45.0 32.5 38.8 0.4 186 chr2L 16655011 intron CG42389 + chr2L 16655104 intron CG42389 + chr2L 16655197 intron CG42389 + chr2L_15_16655001 chr2L_16655001 RAL-303_100b 954 chr2L 16655037 16655058 chr2L 16655172 16655220 12 160 41.0 32.5 36.8 0.3 183 chr2L 16655037 intron CG42389 + chr2L 16655128 intron CG42389 + chr2L 16655220 intron CG42389 + chr2L_12_16655001 chr2L_16655001 RAL-303_100b 955 chr2L 16670393 16670449 chr2L 16670495 16670541 22 99 40.0 42.0 41.0 0.5 148 chr2L 16670393 intron Trpgamma - chr2L 16670467 intron Trpgamma - chr2L 16670541 intron Trpgamma - chr2L_22_16670001 chr2L_16670001 RAL-303_100b 956 chr2L 16694112 16694150 chr2L 16694223 16694261 10 105 55.0 44.5 49.8 0.2 149 chr2L 16694112 intron grp + chr2L 16694186 intron grp + chr2L 16694261 intron grp + chr2L_10_16690001 chr2L_16690001 RAL-303_100b 957 chr2L 16694152 16694159 chr2L 16694220 16694270 5 92 46.5 42.0 44.2 0.1 118 chr2L 16694152 intron grp + chr2L 16694211 intron grp + chr2L 16694270 intron grp + chr2L_5_16690001 chr2L_16690001 RAL-303_100b 958 chr2L 16695238 16695290 chr2L 16695347 16695379 15 107 22.5 11.5 17.0 0.8 141 chr2L 16695238 intron grp + chr2L 16695308 intron grp + chr2L 16695379 intron grp + chr2L_15_16695001 chr2L_16695001 RAL-303_100b 959 chr2L 16697043 16697086 chr2L 16697261 16697303 20 218 30.0 17.0 23.5 0.8 260 chr2L 16697043 intron grp + chr2L 16697173 intron grp + chr2L 16697303 intron grp + chr2L_20_16695001 chr2L_16695001 RAL-303_100b 960 chr2L 16703646 16703659 chr2L 16703912 16703922 4 264 30.0 36.5 33.2 0.1 276 chr2L 16703646 intergenic not near genes chr2L 16703784 intergenic not near genes chr2L 16703922 intergenic CG31808 - chr2L_4_16700001 chr2L_16700001 RAL-303_100b 961 chr2L 16709052 16709103 chr2L 16709161 16709212 34 108 9.5 11.5 10.5 3.0 160 chr2L 16709052 intron CG31808 - chr2L 16709132 intron CG31808 - chr2L 16709212 intron CG31808 - chr2L_34_16705001 chr2L_16705001 RAL-303_100b 962 chr2L 16716924 16716982 chr2L 16717066 16717124 39 139 30.0 36.5 33.2 1.1 200 chr2L 16716924 intron Cyt-c-d + chr2L 16717024 intron Cyt-c-d + chr2L 16717124 intron Cyt-c-d + chr2L_39_16715001 chr2L_16715001 RAL-303_100b 963 chr2L 16729207 16729221 chr2L 16729545 16729564 9 341 40.5 34.5 37.5 0.2 357 chr2L 16729207 intergenic not near genes chr2L 16729386 intergenic CG31812 + chr2L 16729564 intergenic CG31812 + chr2L_9_16725001 chr2L_16725001 RAL-303_100b 964 chr2L 16799473 16799504 chr2L 16799640 16799671 20 165 0.0 17.5 8.8 2.0 198 chr2L 16799473 intron Ugt36Bc + chr2L 16799572 intron Ugt36Bc + chr2L 16799671 intron Ugt36Bc + chr2L_20_16795001 chr2L_16795001 RAL-303_100b 965 chr2L 16809636 16809655 chr2L 16809789 16809801 8 152 18.0 0.5 9.2 0.8 165 chr2L 16809636 intron,intron CG13280 -,CG13272 + chr2L 16809718 intron,intron CG13280 -,CG13272 + chr2L 16809801 intron,intron CG13280 -,CG13272 + chr2L_8_16805001 chr2L_16805001 RAL-303_100b 966 chr2L 16852788 16852808 chr2L 16859948 16859975 Doc4-element 13 7166 39.5 42.5 41.0 0.3 7187 chr2L 16852788 intergenic CG31810 - chr2L 16856382 intron CG31809 - chr2L 16859975 intergenic CG6012 - chr2L_13_16855001 chr2L_16855001 RAL-303_100b 967 chr2L 16867003 16867033 chr2L 16867123 16867153 19 118 29.0 38.0 33.5 0.6 150 chr2L 16867003 intergenic not near genes chr2L 16867078 intergenic not near genes chr2L 16867153 intergenic not near genes chr2L_19_16865001 chr2L_16865001 RAL-303_100b 968 chr2L 16872463 16872474 chr2L 16872568 16872578 5 104 51.0 48.0 49.5 0.1 115 chr2L 16872463 intron CR31781 + chr2L 16872520 intron CR31781 + chr2L 16872578 intron CR31781 + chr2L_5_16870001 chr2L_16870001 RAL-303_100b 969 chr2L 16872475 16872518 chr2L 16872566 16872608 27 98 51.0 48.5 49.8 0.5 133 chr2L 16872475 intron CR31781 + chr2L 16872542 intron CR31781 + chr2L 16872608 intron CR31781 + chr2L_27_16870001 chr2L_16870001 RAL-303_100b 970 chr2L 16927248 16927295 chr2L 16927354 16927396 23 104 41.5 45.5 43.5 0.5 148 chr2L 16927248 intergenic not near genes chr2L 16927322 intergenic not near genes chr2L 16927396 intergenic not near genes chr2L_23_16925001 chr2L_16925001 RAL-303_100b 971 chr2L 16958083 16958133 chr2L 16962896 16962946 Doc 35 4812 11.5 13.5 12.5 2.6 4863 chr2L 16958083 intergenic not near genes chr2L 16960514 intergenic not near genes chr2L 16962946 intergenic not near genes chr2L_35_16960001 chr2L_16960001 RAL-303_100b 972 chr2L 16995494 16995552 chr2L 16995599 16995657 27 100 45.5 44.0 44.8 0.6 163 chr2L 16995494 intergenic not near genes chr2L 16995576 intergenic not near genes chr2L 16995657 intergenic not near genes chr2L_27_16995001 chr2L_16995001 RAL-303_100b 973 chr2L 17000104 17000152 chr2L 17000251 17000299 28 146 36.0 35.5 35.8 0.8 195 chr2L 17000104 intergenic not near genes chr2L 17000202 intergenic not near genes chr2L 17000299 intergenic not near genes chr2L_28_17000001 chr2L_17000001 RAL-303_100b 974 chr2L 17001810 17001858 chr2L 17001957 17001964 10 146 34.0 33.0 33.5 0.3 154 chr2L 17001810 intergenic not near genes chr2L 17001887 intergenic not near genes chr2L 17001964 intergenic not near genes chr2L_10_17000001 chr2L_17000001 RAL-303_100b 975 chr2L 17002053 17002086 chr2L 17002334 17002375 14 285 31.0 26.0 28.5 0.5 322 chr2L 17002053 intergenic not near genes chr2L 17002214 intergenic not near genes chr2L 17002375 intergenic not near genes chr2L_14_17000001 chr2L_17000001 RAL-303_100b 976 chr2L 17005388 17005434 chr2L 17005510 17005555 21 117 43.5 45.5 44.5 0.5 167 chr2L 17005388 intergenic not near genes chr2L 17005472 intergenic not near genes chr2L 17005555 intergenic not near genes chr2L_21_17005001 chr2L_17005001 RAL-303_100b 977 chr2L 17032480 17032523 chr2L 17032590 17032627 11 108 35.0 38.0 36.5 0.3 147 chr2L 17032480 intergenic not near genes chr2L 17032554 intergenic not near genes chr2L 17032627 intergenic not near genes chr2L_11_17030001 chr2L_17030001 RAL-303_100b 978 chr2L 17052385 17052444 chr2L 17052522 17052581 34 137 3.5 7.0 5.2 5.5 196 chr2L 17052385 intergenic not near genes chr2L 17052483 intergenic not near genes chr2L 17052581 intergenic not near genes chr2L_34_17050001 chr2L_17050001 RAL-303_100b 979 chr2L 17058418 17058425 chr2L 17058596 17058603 10 178 21.0 23.5 22.2 0.4 185 chr2L 17058418 intergenic not near genes chr2L 17058510 intergenic not near genes chr2L 17058603 intergenic not near genes chr2L_10_17055001 chr2L_17055001 RAL-303_100b 980 chr2L 17062737 17062788 chr2L 17062844 17062895 7 107 20.0 26.0 23.0 0.3 158 chr2L 17062737 intergenic not near genes chr2L 17062816 intergenic not near genes chr2L 17062895 intergenic not near genes chr2L_7_17060001 chr2L_17060001 RAL-303_100b 981 chr2L 17069230 17069286 chr2L 17069332 17069383 12 99 28.5 20.5 24.5 0.5 153 chr2L 17069230 intergenic not near genes chr2L 17069306 intergenic not near genes chr2L 17069383 intergenic not near genes chr2L_12_17065001 chr2L_17065001 RAL-303_100b 982 chr2L 17087370 17087404 chr2L 17087498 17087547 25 135 34.0 32.0 33.0 0.7 177 chr2L 17087370 intergenic CG12620 + chr2L 17087458 intergenic CG12620 + chr2L 17087547 intergenic CG12620 + chr2L_25_17085001 chr2L_17085001 RAL-303_100b 983 chr2L 17101018 17101076 chr2L 17101522 17101581 17 504 69.5 66.5 68.0 0.2 563 chr2L 17101018 intergenic not near genes chr2L 17101300 intergenic not near genes chr2L 17101581 intergenic not near genes chr2L_17_17100001 chr2L_17100001 RAL-303_100b 984 chr2L 17101894 17101916 chr2L 17101996 17102011 12 100 22.0 26.5 24.2 0.5 117 chr2L 17101894 intergenic not near genes chr2L 17101952 intergenic not near genes chr2L 17102011 intergenic not near genes chr2L_12_17100001 chr2L_17100001 RAL-303_100b 985 chr2L 17113359 17113408 chr2L 17113468 17113517 19 106 36.0 41.0 38.5 0.5 158 chr2L 17113359 intergenic not near genes chr2L 17113438 intergenic not near genes chr2L 17113517 intergenic not near genes chr2L_19_17110001 chr2L_17110001 RAL-303_100b 986 chr2L 17120816 17120872 chr2L 17120920 17120976 30 101 35.5 37.0 36.2 0.8 160 chr2L 17120816 intergenic not near genes chr2L 17120896 intergenic not near genes chr2L 17120976 intergenic not near genes chr2L_30_17120001 chr2L_17120001 RAL-303_100b 987 chr2L 17157823 17157876 chr2L 17157930 17157983 12 102 25.0 23.5 24.2 0.5 160 chr2L 17157823 intron,intron CG34106 +,beat-IIIa + chr2L 17157903 intron,intron CG34106 +,beat-IIIa + chr2L 17157983 intron,intron CG34106 +,beat-IIIa + chr2L_12_17155001 chr2L_17155001 RAL-303_100b 988 chr2L 17158703 17158761 chr2L 17158831 17158888 32 125 12.0 6.5 9.2 3.1 185 chr2L 17158703 5` UTR,exon CG34106 +,beat-IIIa + chr2L 17158796 intron,intron CG34106 +,beat-IIIa + chr2L 17158888 intron,intron CG34106 +,beat-IIIa + chr2L_32_17155001 chr2L_17155001 RAL-303_100b 989 chr2L 17159835 17159865 chr2L 17159943 17159970 5 102 35.0 32.5 33.8 0.1 135 chr2L 17159835 intron,intron CG34106 +,beat-IIIa + chr2L 17159902 intron,intron CG34106 +,beat-IIIa + chr2L 17159970 intron,intron CG34106 +,beat-IIIa + chr2L_5_17155001 chr2L_17155001 RAL-303_100b 990 chr2L 17159868 17159881 chr2L 17159939 17159969 7 87 33.0 31.5 32.2 0.2 101 chr2L 17159868 intron,intron CG34106 +,beat-IIIa + chr2L 17159918 intron,intron CG34106 +,beat-IIIa + chr2L 17159969 intron,intron CG34106 +,beat-IIIa + chr2L_7_17155001 chr2L_17155001 RAL-303_100b 991 chr2L 17163588 17163636 chr2L 17163702 17163750 20 113 27.5 31.5 29.5 0.7 162 chr2L 17163588 intron,intron CG34106 +,beat-IIIa + chr2L 17163669 intron,intron CG34106 +,beat-IIIa + chr2L 17163750 intron,intron CG34106 +,beat-IIIa + chr2L_20_17160001 chr2L_17160001 RAL-303_100b 992 chr2L 17167544 17167595 chr2L 17167810 17167861 pogo 33 264 16.0 18.5 17.2 1.8 317 chr2L 17167544 intron,intron CG34106 +,beat-IIIa + chr2L 17167702 intron,intron CG34106 +,beat-IIIa + chr2L 17167861 intron,intron CG34106 +,beat-IIIa + chr2L_33_17165001 chr2L_17165001 RAL-303_100b 993 chr2L 17185398 17185449 chr2L 17185523 17185574 14 124 30.5 30.5 30.5 0.4 176 chr2L 17185398 intergenic not near genes chr2L 17185486 intergenic not near genes chr2L 17185574 intergenic not near genes chr2L_14_17185001 chr2L_17185001 RAL-303_100b 994 chr2L 17193849 17193870 chr2L 17193961 17193982 5 112 15.0 21.0 18.0 0.3 133 chr2L 17193849 intron beat-IIIc - chr2L 17193916 intron beat-IIIc - chr2L 17193982 intron beat-IIIc - chr2L_5_17190001 chr2L_17190001 RAL-303_100b 995 chr2L 17199136 17199187 chr2L 17200628 17200669 hobo 27 1490 11.5 7.5 9.5 2.6 1533 chr2L 17199136 intron beat-IIIc - chr2L 17199902 intron beat-IIIc - chr2L 17200669 intron beat-IIIc - chr2L_27_17195001 chr2L_17195001 RAL-303_100b 996 chr2L 17261179 17261244 chr2L 17261295 17261348 6 114 24.5 30.5 27.5 0.2 169 chr2L 17261179 intergenic beat-IIIc - chr2L 17261264 intergenic not near genes chr2L 17261348 intergenic not near genes chr2L_6_17260001 chr2L_17260001 RAL-303_100b 997 chr2L 17273173 17273223 chr2L 17277981 17278025 F-element 49 4807 15.0 13.5 14.2 3.2 4852 chr2L 17273173 intergenic not near genes chr2L 17275599 intergenic not near genes chr2L 17278025 intergenic not near genes chr2L_49_17275001 chr2L_17275001 RAL-303_100b 998 chr2L 17285822 17285878 chr2L 17285924 17285979 30 100 39.0 36.0 37.5 0.8 157 chr2L 17285822 intergenic CG15140 + chr2L 17285900 intergenic CG15140 + chr2L 17285979 intergenic CG15140 + chr2L_30_17285001 chr2L_17285001 RAL-303_100b 999 chr2L 17286402 17286446 chr2L 17286765 17286785 18 368 36.0 33.5 34.8 0.5 383 chr2L 17286402 intron CG15140 + chr2L 17286594 intron CG15140 + chr2L 17286785 exon CG15140 + chr2L_18_17285001 chr2L_17285001 RAL-303_100b 1000 chr2L 17289206 17289261 chr2L 17289309 17289343 16 98 29.0 20.5 24.8 0.6 137 chr2L 17289206 intergenic not near genes chr2L 17289274 intergenic not near genes chr2L 17289343 intergenic not near genes chr2L_16_17285001 chr2L_17285001 RAL-303_100b 1001 chr2L 17304973 17305015 chr2L 17305159 17305218 21 201 34.0 35.5 34.8 0.6 245 chr2L 17304973 intergenic not near genes chr2L 17305096 intergenic not near genes chr2L 17305218 intergenic not near genes chr2L_21_17305001 chr2L_17305001 RAL-303_100b 1002 chr2L 17310354 17310402 chr2L 17310473 17310506 7 114 34.5 32.0 33.2 0.2 152 chr2L 17310354 intergenic not near genes chr2L 17310430 intergenic not near genes chr2L 17310506 intergenic not near genes chr2L_7_17310001 chr2L_17310001 RAL-303_100b 1003 chr2L 17327891 17327929 chr2L 17328002 17328039 22 108 42.0 54.5 48.2 0.4 148 chr2L 17327891 intergenic not near genes chr2L 17327965 intergenic not near genes chr2L 17328039 intergenic not near genes chr2L_22_17325001 chr2L_17325001 RAL-303_100b 1004 chr2L 17333572 17333617 chr2L 17333675 17333701 10 106 31.5 22.0 26.8 0.4 129 chr2L 17333572 intergenic not near genes chr2L 17333636 intergenic not near genes chr2L 17333701 intergenic not near genes chr2L_10_17330001 chr2L_17330001 RAL-303_100b 1005 chr2L 17335505 17335536 chr2L 17336711 17336742 1360 17 1203 7.0 11.5 9.2 1.7 1237 chr2L 17335505 intergenic not near genes chr2L 17336124 intergenic not near genes chr2L 17336742 intergenic not near genes chr2L_17_17335001 chr2L_17335001 RAL-303_100b 1006 chr2L 17339107 17339158 chr2L 17339209 17339252 20 101 29.5 24.5 27.0 0.7 145 chr2L 17339107 intergenic not near genes chr2L 17339180 intergenic not near genes chr2L 17339252 intergenic not near genes chr2L_20_17335001 chr2L_17335001 RAL-303_100b 1007 chr2L 17343549 17343565 chr2L 17343667 17343668 5 114 47.0 53.5 50.2 0.1 119 chr2L 17343549 intergenic not near genes chr2L 17343608 intergenic not near genes chr2L 17343668 intergenic not near genes chr2L_5_17340001 chr2L_17340001 RAL-303_100b 1008 chr2L 17359998 17360041 chr2L 17360201 17360244 23 202 28.0 2.0 15.0 1.4 246 chr2L 17359998 intergenic not near genes chr2L 17360121 intergenic not near genes chr2L 17360244 intergenic not near genes chr2L_23_17360001 chr2L_17360001 RAL-303_100b 1009 chr2L 17380430 17380440 chr2L 17380725 17380735 4 295 44.5 16.5 30.5 0.1 305 chr2L 17380430 intron Lrch - chr2L 17380582 intron Lrch - chr2L 17380735 intron Lrch - chr2L_4_17380001 chr2L_17380001 RAL-303_100b 1010 chr2L 17380441 17380482 chr2L 17380721 17380777 10 291 31.0 15.5 23.2 0.4 336 chr2L 17380441 intron Lrch - chr2L 17380609 intron Lrch - chr2L 17380777 intron Lrch - chr2L_10_17380001 chr2L_17380001 RAL-303_100b 1011 chr2L 17388573 17388620 chr2L 17388674 17388721 6 101 0.0 0.0 0.0 6.0 148 chr2L 17388573 intron CLIP-190 + chr2L 17388647 intron CLIP-190 + chr2L 17388721 intron CLIP-190 + chr2L_6_17385001 chr2L_17385001 RAL-303_100b 1012 chr2L 17389688 17389740 chr2L 17389888 17389937 24 198 36.5 37.5 37.0 0.6 249 chr2L 17389688 intron CLIP-190 + chr2L 17389812 intron CLIP-190 + chr2L 17389937 intron CLIP-190 + chr2L_24_17385001 chr2L_17385001 RAL-303_100b 1013 chr2L 17397991 17397998 chr2L 17398106 17398108 8 114 24.0 35.0 29.5 0.3 117 chr2L 17397991 intron CLIP-190 + chr2L 17398050 intron CLIP-190 + chr2L 17398108 intron CLIP-190 + chr2L_8_17395001 chr2L_17395001 RAL-303_100b 1014 chr2L 17398000 17398030 chr2L 17398105 17398137 12 112 23.0 35.0 29.0 0.4 137 chr2L 17398000 intron CLIP-190 + chr2L 17398068 intron CLIP-190 + chr2L 17398137 intron CLIP-190 + chr2L_12_17395001 chr2L_17395001 RAL-303_100b 1015 chr2L 17399306 17399362 chr2L 17399420 17399489 25 124 49.0 39.0 44.0 0.6 183 chr2L 17399306 intron CLIP-190 + chr2L 17399398 intron CLIP-190 + chr2L 17399489 intron CLIP-190 + chr2L_25_17395001 chr2L_17395001 RAL-303_100b 1016 chr2L 17420890 17420907 chr2L 17420985 17421013 7 103 17.0 19.0 18.0 0.4 123 chr2L 17420890 intron Dif - chr2L 17420952 intron Dif - chr2L 17421013 intron Dif - chr2L_7_17420001 chr2L_17420001 RAL-303_100b 1017 chr2L 17425742 17425794 chr2L 17425894 17425946 25 152 6.5 22.5 14.5 1.6 204 chr2L 17425742 intron Dif - chr2L 17425844 intron Dif - chr2L 17425946 intron Dif - chr2L_25_17425001 chr2L_17425001 RAL-303_100b 1018 chr2L 17432013 17432019 chr2L 17432135 17432151 1360 10 131 0.0 10.0 5.0 1.7 138 chr2L 17432013 intron Dif - chr2L 17432082 intron Dif - chr2L 17432151 intron Dif - chr2L_10_17430001 chr2L_17430001 RAL-303_100b 1019 chr2L 17432020 17432045 chr2L 17432127 17432155 1360 12 126 0.0 8.0 4.0 2.4 135 chr2L 17432020 intron Dif - chr2L 17432088 intron Dif - chr2L 17432155 intron Dif - chr2L_12_17430001 chr2L_17430001 RAL-303_100b 1020 chr2L 17456370 17456417 chr2L 17456486 17456523 7 110 23.5 21.5 22.5 0.3 153 chr2L 17456370 intron CG5050 + chr2L 17456446 intron CG5050 + chr2L 17456523 intron CG5050 + chr2L_7_17455001 chr2L_17455001 RAL-303_100b 1021 chr2L 17467582 17467632 chr2L 17467701 17467751 21 118 35.0 32.5 33.8 0.6 169 chr2L 17467582 intron BicD - chr2L 17467666 intron BicD - chr2L 17467751 intron BicD - chr2L_21_17465001 chr2L_17465001 RAL-303_100b 1022 chr2L 17506267 17506297 chr2L 17506403 17506439 13 137 20.5 32.5 26.5 0.5 172 chr2L 17506267 exon Dhc36C + chr2L 17506353 intron Dhc36C + chr2L 17506439 intron Dhc36C + chr2L_13_17505001 chr2L_17505001 RAL-303_100b 1023 chr2L 17511609 17511660 chr2L 17511776 17511822 20 166 12.5 5.0 8.8 2.0 213 chr2L 17511609 intron Dhc36C + chr2L 17511716 intron Dhc36C + chr2L 17511822 exon Dhc36C + chr2L_20_17510001 chr2L_17510001 RAL-303_100b 1024 chr2L 17533411 17533444 chr2L 17533523 17533556 8 111 45.5 38.0 41.8 0.2 145 chr2L 17533411 intergenic not near genes chr2L 17533484 intergenic not near genes chr2L 17533556 intergenic not near genes chr2L_8_17530001 chr2L_17530001 RAL-303_100b 1025 chr2L 17565352 17565411 chr2L 17565468 17565526 8 116 25.0 28.0 26.5 0.3 174 chr2L 17565352 intergenic not near genes chr2L 17565439 intergenic not near genes chr2L 17565526 intergenic not near genes chr2L_8_17565001 chr2L_17565001 RAL-303_100b 1026 chr2L 17579861 17579913 chr2L 17579964 17580016 18 102 31.0 25.0 28.0 0.6 155 chr2L 17579861 5` UTR CR45698 + chr2L 17579938 5` UTR CR45698 + chr2L 17580016 intergenic CR45698 + chr2L_18_17575001 chr2L_17575001 RAL-303_100b 1027 chr2L 17602640 17602693 chr2L 17602751 17602804 25 108 34.0 25.0 29.5 0.8 164 chr2L 17602640 exon Sytalpha + chr2L 17602722 intron Sytalpha + chr2L 17602804 intron Sytalpha + chr2L_25_17600001 chr2L_17600001 RAL-303_100b 1028 chr2L 17607458 17607477 chr2L 17607581 17607585 9 121 32.0 3.0 17.5 0.5 127 chr2L 17607458 intergenic CR44412 - chr2L 17607522 intergenic CR44412 - chr2L 17607585 intergenic CR44412 - chr2L_9_17605001 chr2L_17605001 RAL-303_100b 1029 chr2L 17675918 17675973 chr2L 17676022 17676077 8 103 25.5 23.0 24.2 0.3 159 chr2L 17675918 intron CadN - chr2L 17675998 intron CadN - chr2L 17676077 intron CadN - chr2L_8_17675001 chr2L_17675001 RAL-303_100b 1030 chr2L 17680974 17681012 chr2L 17681075 17681103 10 100 35.5 28.0 31.8 0.3 129 chr2L 17680974 intron CadN - chr2L 17681038 intron CadN - chr2L 17681103 intron CadN - chr2L_10_17680001 chr2L_17680001 RAL-303_100b 1031 chr2L 17687495 17687508 chr2L 17692265 17692278 F-element 18 4770 20.0 19.0 19.5 0.9 4783 chr2L 17687495 intron CadN - chr2L 17689886 intron CadN - chr2L 17692278 intron CadN - chr2L_18_17685001 chr2L_17685001 RAL-303_100b 1032 chr2L 17687509 17687518 chr2L 17692263 17692288 F-element 9 4766 14.0 18.0 16.0 0.5 4779 chr2L 17687509 intron CadN - chr2L 17689898 intron CadN - chr2L 17692288 intron CadN - chr2L_9_17685001 chr2L_17685001 RAL-303_100b 1033 chr2L 17692920 17692972 chr2L 17693059 17693111 26 138 21.5 28.0 24.8 1.0 191 chr2L 17692920 intron CadN - chr2L 17693016 intron CadN - chr2L 17693111 intron CadN - chr2L_26_17690001 chr2L_17690001 RAL-303_100b 1034 chr2L 17703628 17703687 chr2L 17703740 17703803 28 111 48.0 48.0 48.0 0.6 175 chr2L 17703628 intron CadN - chr2L 17703716 intron CadN - chr2L 17703803 intron CadN - chr2L_28_17700001 chr2L_17700001 RAL-303_100b 1035 chr2L 17709093 17709149 chr2L 17709202 17709258 15 109 4.0 4.5 4.2 2.9 165 chr2L 17709093 intron CadN - chr2L 17709176 intron CadN - chr2L 17709258 intron CadN - chr2L_15_17705001 chr2L_17705001 RAL-303_100b 1036 chr2L 17723766 17723802 chr2L 17723884 17723920 21 117 37.5 42.5 40.0 0.5 154 chr2L 17723766 intron CadN - chr2L 17723843 intron CadN - chr2L 17723920 intron CadN - chr2L_21_17720001 chr2L_17720001 RAL-303_100b 1037 chr2L 17727843 17727882 chr2L 17729335 17729354 hobo 23 1487 11.0 22.5 16.8 1.3 1511 chr2L 17727843 intron CadN - chr2L 17728598 intron CadN - chr2L 17729354 intron CadN - chr2L_23_17725001 chr2L_17725001 RAL-303_100b 1038 chr2L 17741936 17741987 chr2L 17742037 17742088 31 100 21.0 22.0 21.5 1.4 152 chr2L 17741936 intron CadN - chr2L 17742012 intron CadN - chr2L 17742088 intron CadN - chr2L_31_17740001 chr2L_17740001 RAL-303_100b 1039 chr2L 17747982 17748029 chr2L 17748078 17748106 31 97 37.0 36.5 36.8 0.8 124 chr2L 17747982 intron CadN - chr2L 17748044 intron CadN - chr2L 17748106 intron CadN - chr2L_31_17745001 chr2L_17745001 RAL-303_100b 1040 chr2L 17750904 17750951 chr2L 17751042 17751080 28 142 33.0 39.0 36.0 0.8 176 chr2L 17750904 intron CadN - chr2L 17750992 intron CadN - chr2L 17751080 intron CadN - chr2L_28_17750001 chr2L_17750001 RAL-303_100b 1041 chr2L 17765065 17765096 chr2L 17765228 17765259 13 161 33.0 31.5 32.2 0.4 194 chr2L 17765065 intron CadN - chr2L 17765162 intron CadN - chr2L 17765259 intron CadN - chr2L_13_17765001 chr2L_17765001 RAL-303_100b 1042 chr2L 17796000 17796042 chr2L 17796106 17796146 27 105 42.5 41.0 41.8 0.6 146 chr2L 17796000 intron CadN2 - chr2L 17796073 intron CadN2 - chr2L 17796146 intron CadN2 - chr2L_27_17795001 chr2L_17795001 RAL-303_100b 1043 chr2L 17805506 17805548 chr2L 17805660 17805710 17 162 38.0 35.5 36.8 0.4 204 chr2L 17805506 intron CadN2 - chr2L 17805608 intron CadN2 - chr2L 17805710 intron CadN2 - chr2L_17_17805001 chr2L_17805001 RAL-303_100b 1044 chr2L 17819896 17819951 chr2L 17825124 17825179 copia 40 5226 13.0 17.0 15.0 2.5 5283 chr2L 17819896 intron CadN2 - chr2L 17822538 intron CadN2 - chr2L 17825179 intron CadN2 - chr2L_40_17820001 chr2L_17820001 RAL-303_100b 1045 chr2L 17837129 17837184 chr2L 17837254 17837309 19 124 30.5 28.5 29.5 0.6 180 chr2L 17837129 intron CadN2 - chr2L 17837219 intron CadN2 - chr2L 17837309 intron CadN2 - chr2L_19_17835001 chr2L_17835001 RAL-303_100b 1046 chr2L 17879973 17880031 chr2L 17880085 17880143 46 109 12.5 7.5 10.0 4.2 170 chr2L 17879973 intergenic not near genes chr2L 17880058 intergenic not near genes chr2L 17880143 intergenic not near genes chr2L_46_17880001 chr2L_17880001 RAL-303_100b 1047 chr2L 17897195 17897249 chr2L 17897301 17897355 27 102 46.0 41.5 43.8 0.6 160 chr2L 17897195 intergenic not near genes chr2L 17897275 intergenic not near genes chr2L 17897355 intergenic not near genes chr2L_27_17895001 chr2L_17895001 RAL-303_100b 1048 chr2L 17906732 17906756 chr2L 17906840 17906860 12 105 35.0 35.0 35.0 0.3 128 chr2L 17906732 intergenic not near genes chr2L 17906796 intergenic not near genes chr2L 17906860 intergenic not near genes chr2L_12_17905001 chr2L_17905001 RAL-303_100b 1049 chr2L 17906758 17906769 chr2L 17906839 17906877 7 97 34.5 35.0 34.8 0.2 119 chr2L 17906758 intergenic not near genes chr2L 17906818 intergenic not near genes chr2L 17906877 intergenic not near genes chr2L_7_17905001 chr2L_17905001 RAL-303_100b 1050 chr2L 17906771 17906788 chr2L 17906837 17906881 14 97 30.5 35.0 32.8 0.4 110 chr2L 17906771 intergenic not near genes chr2L 17906826 intergenic not near genes chr2L 17906881 intergenic not near genes chr2L_14_17905001 chr2L_17905001 RAL-303_100b 1051 chr2L 17911932 17911988 chr2L 17914135 17914191 pogo 40 2201 18.0 18.0 18.0 2.1 2259 chr2L 17911932 intergenic not near genes chr2L 17913062 intergenic not near genes chr2L 17914191 intergenic CG43271 - chr2L_40_17910001 chr2L_17910001 RAL-303_100b 1052 chr2L 17925994 17926012 chr2L 17926205 17926223 20 208 1.0 11.5 6.2 2.8 229 chr2L 17925994 intergenic not near genes chr2L 17926108 intergenic not near genes chr2L 17926223 intergenic not near genes chr2L_20_17925001 chr2L_17925001 RAL-303_100b 1053 chr2L 17930751 17930790 chr2L 17930848 17930901 20 107 28.0 29.5 28.8 0.7 150 chr2L 17930751 intergenic not near genes chr2L 17930826 intergenic not near genes chr2L 17930901 intergenic not near genes chr2L_20_17930001 chr2L_17930001 RAL-303_100b 1054 chr2L 17933504 17933560 chr2L 17933920 17933970 26 414 39.5 39.0 39.2 0.6 466 chr2L 17933504 intergenic not near genes chr2L 17933737 intergenic not near genes chr2L 17933970 intergenic not near genes chr2L_26_17930001 chr2L_17930001 RAL-303_100b 1055 chr2L 17938671 17938876 chr2L 17938782 17938987 27 113 33.5 25.0 29.2 0.9 316 chr2L 17938671 intergenic CR44399 - chr2L 17938829 intergenic CR44399 - chr2L 17938987 intergenic CR44399 - chr2L_27_17935001 chr2L_17935001 RAL-303_100b 1056 chr2L 17943324 17943385 chr2L 17943620 17943676 32 293 49.0 45.5 47.2 0.7 352 chr2L 17943324 intergenic not near genes chr2L 17943500 intergenic not near genes chr2L 17943676 intergenic not near genes chr2L_32_17940001 chr2L_17940001 RAL-303_100b 1057 chr2L 17943865 17943919 chr2L 17943993 17944047 27 126 47.0 42.0 44.5 0.6 182 chr2L 17943865 intergenic not near genes chr2L 17943956 intergenic not near genes chr2L 17944047 intergenic not near genes chr2L_27_17940001 chr2L_17940001 RAL-303_100b 1058 chr2L 17951918 17951974 chr2L 17953410 17953466 hobo 62 1490 19.0 16.5 17.8 3.3 1548 chr2L 17951918 intergenic CR44398 -,CR44397 - chr2L 17952692 intergenic not near genes chr2L 17953466 intergenic not near genes chr2L_62_17950001 chr2L_17950001 RAL-303_100b 1059 chr2L 17989973 17990004 chr2L 17990071 17990092 4 97 51.5 45.0 48.2 0.1 119 chr2L 17989973 intergenic Prosbeta5R2 + chr2L 17990032 intergenic Prosbeta5R2 + chr2L 17990092 intergenic Prosbeta5R2 + chr2L_4_17990001 chr2L_17990001 RAL-303_100b 1060 chr2L 17990007 17990023 chr2L 17990067 17990124 19 91 50.0 46.0 48.0 0.4 117 chr2L 17990007 intergenic Prosbeta5R2 + chr2L 17990066 intergenic Prosbeta5R2 + chr2L 17990124 intergenic Prosbeta5R2 + chr2L_19_17990001 chr2L_17990001 RAL-303_100b 1061 chr2L 18026962 18027014 chr2L 18027327 18027379 23 363 45.5 52.0 48.8 0.5 417 chr2L 18026962 5` UTR rdo + chr2L 18027170 intron rdo + chr2L 18027379 intron rdo + chr2L_23_18025001 chr2L_18025001 RAL-303_100b 1062 chr2L 18044222 18044228 chr2L 18044575 18044581 5 353 32.0 27.5 29.8 0.2 359 chr2L 18044222 intron rdo + chr2L 18044402 intron rdo + chr2L 18044581 intron rdo + chr2L_5_18040001 chr2L_18040001 RAL-303_100b 1063 chr2L 18044231 18044278 chr2L 18044573 18044622 22 347 43.5 27.0 35.2 0.6 391 chr2L 18044231 intron rdo + chr2L 18044426 intron rdo + chr2L 18044622 intron rdo + chr2L_22_18040001 chr2L_18040001 RAL-303_100b 1064 chr2L 18051854 18051904 chr2L 18061021 18061076 roo 50 9166 22.0 15.0 18.5 2.6 9222 chr2L 18051854 intron rdo + chr2L 18056465 intron rdo + chr2L 18061076 intron rdo + chr2L_50_18055001 chr2L_18055001 RAL-303_100b 1065 chr2L 18079816 18079847 chr2L 18079927 18079954 18 109 46.0 49.0 47.5 0.4 138 chr2L 18079816 intron Arr1 + chr2L 18079885 intron Arr1 + chr2L 18079954 intron Arr1 + chr2L_18_18075001 chr2L_18075001 RAL-303_100b 1066 chr2L 18106408 18106408 chr2L 20852215 20852220 4 2745811 53.5 47.0 50.2 0.1 2745812 chr2L 18106408 intergenic not near genes chr2L 19479314 intergenic not near genes chr2L 20852220 intergenic twit + chr2L_4_19475001 chr2L_19475001 RAL-303_100b 1067 chr2L 18111216 18111246 chr2L 18111332 18111352 27 115 33.0 19.5 26.2 1.0 136 chr2L 18111216 intergenic not near genes chr2L 18111284 intergenic not near genes chr2L 18111352 intergenic not near genes chr2L_27_18110001 chr2L_18110001 RAL-303_100b 1068 chr2L 18220561 18220613 chr2L 18220765 18220802 6 195 43.0 33.5 38.2 0.2 241 chr2L 18220561 intron CG42750 - chr2L 18220682 intron CG42750 - chr2L 18220802 intron CG42750 - chr2L_6_18220001 chr2L_18220001 RAL-303_100b 1069 chr2L 18231111 18231161 chr2L 18231221 18231240 8 101 36.5 29.5 33.0 0.2 129 chr2L 18231111 intron CG42750 - chr2L 18231176 intron CG42750 - chr2L 18231240 intron CG42750 - chr2L_8_18230001 chr2L_18230001 RAL-303_100b 1070 chr2L 18235056 18235096 chr2L 18235193 18235202 29 138 45.0 48.5 46.8 0.6 146 chr2L 18235056 intron CG42750 - chr2L 18235129 intron CG42750 - chr2L 18235202 intron CG42750 - chr2L_29_18235001 chr2L_18235001 RAL-303_100b 1071 chr2L 18255459 18255514 chr2L 18255569 18255624 30 107 54.0 55.5 54.8 0.5 165 chr2L 18255459 intron CG42750 - chr2L 18255542 intron CG42750 - chr2L 18255624 intron CG42750 - chr2L_30_18255001 chr2L_18255001 RAL-303_100b 1072 chr2L 18274016 18274074 chr2L 18274127 18274173 45 109 12.5 14.0 13.2 3.2 157 chr2L 18274016 intron CG42750 - chr2L 18274094 intron CG42750 - chr2L 18274173 intron CG42750 - chr2L_45_18270001 chr2L_18270001 RAL-303_100b 1073 chr2L 18291505 18291558 chr2L 18291628 18291641 38 119 11.5 0.5 6.0 5.4 136 chr2L 18291505 intergenic CG43362 -,CR44693 +,CR44696 - chr2L 18291573 intergenic CR44693 +,CG43362 -,CR44696 - chr2L 18291641 intergenic CR44693 +,CG43362 -,CR44696 - chr2L_38_18290001 chr2L_18290001 RAL-303_100b 1074 chr2L 18303948 18304003 chr2L 18304064 18304119 26 114 38.0 37.5 37.8 0.7 171 chr2L 18303948 intergenic not near genes chr2L 18304034 intergenic not near genes chr2L 18304119 intergenic not near genes chr2L_26_18300001 chr2L_18300001 RAL-303_100b 1075 chr2L 18394384 18394417 chr2L 18394488 18394526 14 104 44.5 50.5 47.5 0.3 142 chr2L 18394384 intergenic not near genes chr2L 18394455 intergenic not near genes chr2L 18394526 intergenic not near genes chr2L_14_18390001 chr2L_18390001 RAL-303_100b 1076 chr2L 18394419 18394424 chr2L 18394486 18394520 5 93 42.5 48.5 45.5 0.1 101 chr2L 18394419 intergenic not near genes chr2L 18394470 intergenic not near genes chr2L 18394520 intergenic not near genes chr2L_5_18390001 chr2L_18390001 RAL-303_100b 1077 chr2L 18408006 18408024 chr2L 18412815 18412832 Doc 18 4809 37.0 14.5 25.8 0.7 4826 chr2L 18408006 intergenic not near genes chr2L 18410419 intergenic not near genes chr2L 18412832 intergenic not near genes chr2L_18_18410001 chr2L_18410001 RAL-303_100b 1078 chr2L 18408025 18408060 chr2L 18412810 18412877 Doc 29 4807 14.5 11.0 12.8 2.1 4852 chr2L 18408025 intergenic not near genes chr2L 18410451 intergenic not near genes chr2L 18412877 intergenic not near genes chr2L_29_18410001 chr2L_18410001 RAL-303_100b 1079 chr2L 18417535 18417574 chr2L 18417658 18417677 11 121 37.0 21.0 29.0 0.4 142 chr2L 18417535 intergenic not near genes chr2L 18417606 intergenic not near genes chr2L 18417677 intergenic not near genes chr2L_11_18415001 chr2L_18415001 RAL-303_100b 1080 chr2L 18417992 18418001 chr2L 18418064 18418100 9 97 1.5 21.0 11.2 0.7 108 chr2L 18417992 intergenic not near genes chr2L 18418046 intergenic not near genes chr2L 18418100 intergenic not near genes chr2L_9_18415001 chr2L_18415001 RAL-303_100b 1081 chr2L 18436654 18436688 chr2L 18436799 18436825 10 141 44.5 40.0 42.2 0.2 171 chr2L 18436654 intergenic not near genes chr2L 18436740 intergenic not near genes chr2L 18436825 intergenic not near genes chr2L_10_18435001 chr2L_18435001 RAL-303_100b 1082 chr2L 18496686 18496693 chr2L 18496793 18496800 5 107 37.0 46.0 41.5 0.1 114 chr2L 18496686 intron kon - chr2L 18496743 intron kon - chr2L 18496800 intron kon - chr2L_5_18495001 chr2L_18495001 RAL-303_100b 1083 chr2L 18496694 18496706 chr2L 18496789 18496813 10 104 35.5 47.0 41.2 0.2 119 chr2L 18496694 intron kon - chr2L 18496754 intron kon - chr2L 18496813 intron kon - chr2L_10_18495001 chr2L_18495001 RAL-303_100b 1084 chr2L 18496708 18496720 chr2L 18496780 18496827 4 98 35.5 46.0 40.8 0.1 119 chr2L 18496708 intron kon - chr2L 18496768 intron kon - chr2L 18496827 intron kon - chr2L_4_18495001 chr2L_18495001 RAL-303_100b 1085 chr2L 18538543 18538597 chr2L 18538650 18538703 19 107 24.5 37.5 31.0 0.6 160 chr2L 18538543 intron Pde11 - chr2L 18538623 intron Pde11 - chr2L 18538703 intron Pde11 - chr2L_19_18535001 chr2L_18535001 RAL-303_100b 1086 chr2L 18573637 18573678 chr2L 18573936 18573975 17 299 84.5 118.0 101.2 0.2 338 chr2L 18573637 intron Pde11 - chr2L 18573806 intron Pde11 - chr2L 18573975 intron Pde11 - chr2L_17_18570001 chr2L_18570001 RAL-303_100b 1087 chr2L 18575608 18575612 chr2L 18575727 18575734 6 122 12.5 0.0 6.2 0.8 126 chr2L 18575608 intron Pde11 - chr2L 18575671 intron Pde11 - chr2L 18575734 intron Pde11 - chr2L_6_18575001 chr2L_18575001 RAL-303_100b 1088 chr2L 18577255 18577271 chr2L 18577453 18577459 6 194 42.0 33.5 37.8 0.2 204 chr2L 18577255 intron Pde11 - chr2L 18577357 intron Pde11 - chr2L 18577459 intron Pde11 - chr2L_6_18575001 chr2L_18575001 RAL-303_100b 1089 chr2L 18577273 18577304 chr2L 18577450 18577502 20 190 35.5 32.5 34.0 0.6 229 chr2L 18577273 intron Pde11 - chr2L 18577388 intron Pde11 - chr2L 18577502 intron Pde11 - chr2L_20_18575001 chr2L_18575001 RAL-303_100b 1090 chr2L 18584753 18584766 chr2L 18584863 18584876 6 110 48.5 52.5 50.5 0.1 123 chr2L 18584753 intron Pde11 - chr2L 18584814 intron Pde11 - chr2L 18584876 intron Pde11 - chr2L_6_18580001 chr2L_18580001 RAL-303_100b 1091 chr2L 18587774 18587816 chr2L 18587921 18587963 17 146 51.5 36.0 43.8 0.4 189 chr2L 18587774 intron Pde11 - chr2L 18587868 intron Pde11 - chr2L 18587963 intron Pde11 - chr2L_17_18585001 chr2L_18585001 RAL-303_100b 1092 chr2L 16217660 16217660 chr2L 18622718 18622719 4 2405058 68.5 83.5 76.0 0.1 2405059 chr2L 16217660 intergenic not near genes chr2L 17420190 intron Dif - chr2L 18622719 intron MESR3 + chr2L_4_17420001 chr2L_17420001 RAL-303_100b 1093 chr2L 16615227 16615228 chr2L 18722675 18722676 4 2107448 71.5 53.5 62.5 0.1 2107449 chr2L 16615227 intron CG42389 + chr2L 17668952 intron CadN - chr2L 18722676 intron CG10348 - chr2L_4_17665001 chr2L_17665001 RAL-303_100b 1094 chr2L 18811394 18811438 chr2L 18811501 18811545 27 106 11.0 0.5 5.8 4.0 151 chr2L 18811394 intergenic CG10570 -,CG42502 - chr2L 18811470 intergenic CG10570 -,CG42502 - chr2L 18811545 intergenic not near genes chr2L_27_18810001 chr2L_18810001 RAL-303_100b 1095 chr2L 18811650 18811688 chr2L 18811882 18811922 25 233 46.0 49.5 47.8 0.5 272 chr2L 18811650 intergenic not near genes chr2L 18811786 intergenic not near genes chr2L 18811922 intergenic not near genes chr2L_25_18810001 chr2L_18810001 RAL-303_100b 1096 chr2L 18812531 18812588 chr2L 18812819 18812876 65 286 4.0 17.5 10.8 5.5 345 chr2L 18812531 intergenic CG17325 +,CG42305 + chr2L 18812704 5` UTR,5` UTR CG17325 +,CG42305 + chr2L 18812876 5` UTR,5` UTR CG17325 +,CG42305 + chr2L_65_18810001 chr2L_18810001 RAL-303_100b 1097 chr2L 18847869 18847926 chr2L 18848305 18848357 24 432 34.5 36.0 35.2 0.7 488 chr2L 18847869 intron CG17321 + chr2L 18848113 intron CG17321 + chr2L 18848357 intron CG17321 + chr2L_24_18845001 chr2L_18845001 RAL-303_100b 1098 chr2L 18883833 18883835 chr2L 18883940 18883942 5 107 44.0 15.0 29.5 0.2 109 chr2L 18883833 intergenic not near genes chr2L 18883888 intergenic not near genes chr2L 18883942 intergenic not near genes chr2L_5_18880001 chr2L_18880001 RAL-303_100b 1099 chr2L 18883836 18883852 chr2L 18883937 18883954 25 103 34.5 13.0 23.8 1.0 118 chr2L 18883836 intergenic not near genes chr2L 18883895 intergenic not near genes chr2L 18883954 intergenic not near genes chr2L_25_18880001 chr2L_18880001 RAL-303_100b 1100 chr2L 18883853 18883888 chr2L 18883934 18883962 40 101 17.0 12.0 14.5 2.6 109 chr2L 18883853 intergenic not near genes chr2L 18883908 intergenic not near genes chr2L 18883962 intergenic not near genes chr2L_40_18880001 chr2L_18880001 RAL-303_100b 1101 chr2L 18898377 18898427 chr2L 18898484 18898534 21 104 52.0 41.5 46.8 0.4 157 chr2L 18898377 intergenic not near genes chr2L 18898456 intergenic not near genes chr2L 18898534 intergenic not near genes chr2L_21_18895001 chr2L_18895001 RAL-303_100b 1102 chr2L 18902598 18902654 chr2L 18902904 18902960 30 305 28.5 29.0 28.8 1.0 362 chr2L 18902598 intergenic not near genes chr2L 18902779 intergenic not near genes chr2L 18902960 intergenic not near genes chr2L_30_18900001 chr2L_18900001 RAL-303_100b 1103 chr2L 19024096 19024097 chr2L 21768291 21768291 15 2744194 68.5 72.5 70.5 0.2 2744195 chr2L 19024096 3` UTR CR43700 - chr2L 20396194 intron CG10947 - chr2L 21768291 intron CG31612 - chr2L_15_20395001 chr2L_20395001 RAL-303_100b 1104 chr2L 19035896 19035948 chr2L 19036004 19036057 30 107 44.0 39.5 41.8 0.7 161 chr2L 19035896 intron mib2 + chr2L 19035976 intron mib2 + chr2L 19036057 intron mib2 + chr2L_30_19035001 chr2L_19035001 RAL-303_100b 1105 chr2L 19043283 19043296 chr2L 19043399 19043411 8 116 58.0 43.0 50.5 0.2 128 chr2L 19043283 exon Catsup + chr2L 19043347 exon Catsup + chr2L 19043411 3` UTR Catsup + chr2L_8_19040001 chr2L_19040001 RAL-303_100b 1106 chr2L 19043297 19043334 chr2L 19043398 19043452 11 115 45.5 42.5 44.0 0.2 155 chr2L 19043297 exon Catsup + chr2L 19043374 3` UTR Catsup + chr2L 19043452 3` UTR Catsup + chr2L_11_19040001 chr2L_19040001 RAL-303_100b 1107 chr2L 19077290 19077323 chr2L 19078734 19078789 20 1462 27.0 52.5 39.8 0.5 1499 chr2L 19077290 3` UTR CG10700 - chr2L 19078040 exon CG10700 - chr2L 19078789 exon CG10700 - chr2L_20_19075001 chr2L_19075001 RAL-303_100b 1108 chr2L 19106348 19106406 chr2L 19106453 19106511 31 99 46.5 46.5 46.5 0.7 163 chr2L 19106348 intron Lim3 - chr2L 19106430 intron Lim3 - chr2L 19106511 intron Lim3 - chr2L_31_19105001 chr2L_19105001 RAL-303_100b 1109 chr2L 19147352 19147401 chr2L 19154407 19154461 297 36 7059 13.0 19.5 16.2 2.1 7109 chr2L 19147352 intron brat + chr2L 19150906 intron brat + chr2L 19154461 intron brat + chr2L_36_19150001 chr2L_19150001 RAL-303_100b 1110 chr2L 19162156 19162168 chr2L 19162257 19162269 6 101 47.0 50.5 48.8 0.1 113 chr2L 19162156 intron brat + chr2L 19162212 intron brat + chr2L 19162269 intron brat + chr2L_6_19160001 chr2L_19160001 RAL-303_100b 1111 chr2L 19163341 19163395 chr2L 19163446 19163501 33 102 50.0 52.5 51.2 0.6 160 chr2L 19163341 intron brat + chr2L 19163421 intron brat + chr2L 19163501 intron brat + chr2L_33_19160001 chr2L_19160001 RAL-303_100b 1112 chr2L 19178355 19178368 chr2L 19178474 19178488 4 120 31.0 25.0 28.0 0.1 133 chr2L 19178355 3` UTR brat + chr2L 19178422 3` UTR brat + chr2L 19178488 3` UTR brat + chr2L_4_19175001 chr2L_19175001 RAL-303_100b 1113 chr2L 19189701 19189750 chr2L 19189804 19189853 11 101 51.0 51.0 51.0 0.2 152 chr2L 19189701 3` UTR pigeon + chr2L 19189777 3` UTR pigeon + chr2L 19189853 3` UTR pigeon + chr2L_11_19185001 chr2L_19185001 RAL-303_100b 1114 chr2L 19189942 19190003 chr2L 19190121 19190177 22 178 28.0 39.5 33.8 0.6 235 chr2L 19189942 intergenic pigeon +,drl + chr2L 19190060 intergenic pigeon +,drl + chr2L 19190177 intergenic drl +,pigeon + chr2L_22_19190001 chr2L_19190001 RAL-303_100b 1115 chr2L 19199646 19199701 chr2L 19199748 19199762 23 96 43.0 55.0 49.0 0.5 116 chr2L 19199646 intron drl + chr2L 19199704 intron drl + chr2L 19199762 intron drl + chr2L_23_19195001 chr2L_19195001 RAL-303_100b 1116 chr2L 19209596 19209645 chr2L 19209706 19209755 17 110 47.0 46.5 46.8 0.4 159 chr2L 19209596 intergenic not near genes chr2L 19209676 intergenic not near genes chr2L 19209755 intergenic not near genes chr2L_17_19205001 chr2L_19205001 RAL-303_100b 1117 chr2L 19226880 19226929 chr2L 19226991 19226994 24 103 55.0 50.5 52.8 0.4 114 chr2L 19226880 intergenic not near genes chr2L 19226937 intergenic not near genes chr2L 19226994 intergenic not near genes chr2L_24_19225001 chr2L_19225001 RAL-303_100b 1118 chr2L 19228437 19228478 chr2L 19229327 19229358 18 889 47.5 29.5 38.5 0.5 921 chr2L 19228437 intergenic not near genes chr2L 19228898 intergenic not near genes chr2L 19229358 intergenic not near genes chr2L_18_19225001 chr2L_19225001 RAL-303_100b 1119 chr2L 19246802 19246852 chr2L 19246907 19246957 26 103 47.0 50.0 48.5 0.5 155 chr2L 19246802 intergenic not near genes chr2L 19246880 intergenic not near genes chr2L 19246957 intergenic not near genes chr2L_26_19245001 chr2L_19245001 RAL-303_100b 1120 chr2L 19270870 19270925 chr2L 19270985 19271031 16 113 36.0 47.5 41.8 0.4 161 chr2L 19270870 intron CR44190 - chr2L 19270950 intron CR44190 - chr2L 19271031 intron CR44190 - chr2L_16_19270001 chr2L_19270001 RAL-303_100b 1121 chr2L 19301805 19301846 chr2L 19301922 19301963 31 114 24.0 28.5 26.2 1.1 158 chr2L 19301805 intergenic CG10750 + chr2L 19301884 intergenic CG10750 + chr2L 19301963 intergenic CG10750 + chr2L_31_19300001 chr2L_19300001 RAL-303_100b 1122 chr2L 19317964 19318010 chr2L 19318067 19318113 24 102 31.5 33.0 32.2 0.7 149 chr2L 19317964 intergenic not near genes chr2L 19318038 intergenic not near genes chr2L 19318113 intergenic not near genes chr2L_24_19315001 chr2L_19315001 RAL-303_100b 1123 chr2L 19342937 19342991 chr2L 19343047 19343101 29 109 43.5 45.5 44.5 0.6 164 chr2L 19342937 intron dnt - chr2L 19343019 intron dnt - chr2L 19343101 intron dnt - chr2L_29_19340001 chr2L_19340001 RAL-303_100b 1124 chr2L 19344992 19344997 chr2L 19357226 19357231 blood 4 12234 40.5 20.0 30.2 0.1 12239 chr2L 19344992 intron dnt - chr2L 19351112 intron dnt - chr2L 19357231 intron dnt - chr2L_4_19350001 chr2L_19350001 RAL-303_100b 1125 chr2L 19345003 19345045 chr2L 19357225 19357268 blood 47 12229 17.5 20.0 18.8 2.4 12265 chr2L 19345003 intron dnt - chr2L 19351136 intron dnt - chr2L 19357268 intron dnt - chr2L_47_19350001 chr2L_19350001 RAL-303_100b 1126 chr2L 19357520 19357568 chr2L 19357635 19357683 54 113 20.5 17.5 19.0 2.7 163 chr2L 19357520 intron dnt - chr2L 19357602 intron dnt - chr2L 19357683 intron dnt - chr2L_54_19355001 chr2L_19355001 RAL-303_100b 1127 chr2L 19364053 19364109 chr2L 19364158 19364214 26 104 7.0 7.0 7.0 3.2 161 chr2L 19364053 intergenic CG13086 + chr2L 19364134 intergenic CG13086 + chr2L 19364214 intergenic CG13086 + chr2L_26_19360001 chr2L_19360001 RAL-303_100b 1128 chr2L 19365559 19365566 chr2L 19365660 19365667 4 101 0.0 38.5 19.2 0.2 108 chr2L 19365559 intergenic CG13086 + chr2L 19365613 intergenic CG13086 + chr2L 19365667 intergenic CG13086 + chr2L_4_19365001 chr2L_19365001 RAL-303_100b 1129 chr2L 19374467 19374518 chr2L 19374600 19374652 23 134 44.0 39.0 41.5 0.5 185 chr2L 19374467 intergenic not near genes chr2L 19374560 intergenic not near genes chr2L 19374652 intergenic not near genes chr2L_23_19370001 chr2L_19370001 RAL-303_100b 1130 chr2L 19378323 19378331 chr2L 19378431 19378439 7 107 51.5 41.5 46.5 0.1 116 chr2L 19378323 intergenic not near genes chr2L 19378381 intergenic not near genes chr2L 19378439 intergenic not near genes chr2L_7_19375001 chr2L_19375001 RAL-303_100b 1131 chr2L 19378332 19378337 chr2L 19378430 19378445 5 104 49.5 42.0 45.8 0.1 113 chr2L 19378332 intergenic not near genes chr2L 19378388 intergenic not near genes chr2L 19378445 intergenic not near genes chr2L_5_19375001 chr2L_19375001 RAL-303_100b 1132 chr2L 19378345 19378374 chr2L 19378423 19378482 14 105 45.0 43.0 44.0 0.3 137 chr2L 19378345 intergenic not near genes chr2L 19378414 intergenic not near genes chr2L 19378482 intergenic not near genes chr2L_14_19375001 chr2L_19375001 RAL-303_100b 1133 chr2L 19380485 19380501 chr2L 19380590 19380606 13 104 24.0 15.5 19.8 0.6 121 chr2L 19380485 intergenic CG17350 + chr2L 19380546 intergenic CG17350 + chr2L 19380606 intergenic CG17350 + chr2L_13_19380001 chr2L_19380001 RAL-303_100b 1134 chr2L 19380502 19380529 chr2L 19380587 19380634 25 97 11.0 14.5 12.8 1.8 132 chr2L 19380502 intergenic CG17350 + chr2L 19380568 intergenic CG17350 + chr2L 19380634 intergenic CG17350 + chr2L_25_19380001 chr2L_19380001 RAL-303_100b 1135 chr2L 19383972 19383994 chr2L 19384093 19384108 7 117 44.5 49.5 47.0 0.1 136 chr2L 19383972 exon fon - chr2L 19384040 exon fon - chr2L 19384108 exon fon - chr2L_7_19380001 chr2L_19380001 RAL-303_100b 1136 chr2L 19383996 19384026 chr2L 19384089 19384097 16 112 43.5 48.5 46.0 0.3 101 chr2L 19383996 exon fon - chr2L 19384046 exon fon - chr2L 19384097 exon fon - chr2L_16_19380001 chr2L_19380001 RAL-303_100b 1137 chr2L 19405593 19405641 chr2L 19405708 19405744 23 112 10.0 8.0 9.0 2.3 151 chr2L 19405593 intron Pax - chr2L 19405668 intron Pax - chr2L 19405744 intron Pax - chr2L_23_19405001 chr2L_19405001 RAL-303_100b 1138 chr2L 19407691 19407740 chr2L 19407913 19407962 29 221 55.5 50.0 52.8 0.5 271 chr2L 19407691 intron Pax - chr2L 19407826 intron Pax - chr2L 19407962 intron Pax - chr2L_29_19405001 chr2L_19405001 RAL-303_100b 1139 chr2L 19424928 19424980 chr2L 19425125 19425178 16 196 35.5 46.0 40.8 0.4 250 chr2L 19424928 intron,intron,intron Pax -,CG13085 +,CG16771 + chr2L 19425053 intron,intron,intron Pax -,CG13085 +,CG16771 + chr2L 19425178 intron,intron,intron Pax -,CG13085 +,CG16771 + chr2L_16_19425001 chr2L_19425001 RAL-303_100b 1140 chr2L 19437496 19437532 chr2L 19437613 19437649 20 117 49.5 44.5 47.0 0.4 153 chr2L 19437496 intron CG10237 - chr2L 19437572 intron CG10237 - chr2L 19437649 intron CG10237 - chr2L_20_19435001 chr2L_19435001 RAL-303_100b 1141 chr2L 19441040 19441087 chr2L 19441142 19441188 30 100 44.0 49.0 46.5 0.6 148 chr2L 19441040 intron CG10237 - chr2L 19441114 intron CG10237 - chr2L 19441188 5` UTR CG10237 - chr2L_30_19440001 chr2L_19440001 RAL-303_100b 1142 chr2L 19544589 19544600 chr2L 19544672 19544702 8 94 27.5 28.5 28.0 0.3 113 chr2L 19544589 exon ref(2)P + chr2L 19544646 exon ref(2)P + chr2L 19544702 exon ref(2)P + chr2L_8_19540001 chr2L_19540001 RAL-303_100b 1143 chr2L 19544602 19544620 chr2L 19544664 19544711 13 80 23.5 25.5 24.5 0.5 109 chr2L 19544602 exon ref(2)P + chr2L 19544656 exon ref(2)P + chr2L 19544711 exon ref(2)P + chr2L_13_19540001 chr2L_19540001 RAL-303_100b 1144 chr2L 19557806 19557826 chr2L 19557920 19557942 8 115 43.0 47.5 45.2 0.2 136 chr2L 19557806 intergenic Tep5 + chr2L 19557874 intergenic Tep5 + chr2L 19557942 intergenic Tep5 + chr2L_8_19555001 chr2L_19555001 RAL-303_100b 1145 chr2L 19558495 19558511 chr2L 19558624 19558635 7 128 38.0 48.0 43.0 0.2 140 chr2L 19558495 intron Tep5 + chr2L 19558565 intron Tep5 + chr2L 19558635 intron Tep5 + chr2L_7_19555001 chr2L_19555001 RAL-303_100b 1146 chr2L 19558512 19558548 chr2L 19558621 19558677 15 124 40.0 48.0 44.0 0.3 165 chr2L 19558512 intron Tep5 + chr2L 19558594 intron Tep5 + chr2L 19558677 intron Tep5 + chr2L_15_19555001 chr2L_19555001 RAL-303_100b 1147 chr2L 19559403 19559417 chr2L 19559494 19559505 4 90 44.0 41.5 42.8 0.1 102 chr2L 19559403 exon Tep5 + chr2L 19559454 exon Tep5 + chr2L 19559505 exon Tep5 + chr2L_4_19555001 chr2L_19555001 RAL-303_100b 1148 chr2L 19559981 19560039 chr2L 19560259 19560259 22 274 59.5 48.5 54.0 0.4 278 chr2L 19559981 exon Tep5 + chr2L 19560120 exon Tep5 + chr2L 19560259 exon Tep5 + chr2L_22_19560001 chr2L_19560001 RAL-303_100b 1149 chr2L 19560816 19560854 chr2L 19560921 19560951 21 102 46.0 32.5 39.2 0.5 135 chr2L 19560816 exon Tep5 + chr2L 19560884 exon Tep5 + chr2L 19560951 exon Tep5 + chr2L_21_19560001 chr2L_19560001 RAL-303_100b 1150 chr2L 19561316 19561367 chr2L 19561483 19561518 15 165 50.5 48.5 49.5 0.3 202 chr2L 19561316 exon Tep5 + chr2L 19561417 exon Tep5 + chr2L 19561518 exon Tep5 + chr2L_15_19560001 chr2L_19560001 RAL-303_100b 1151 chr2L 19562030 19562082 chr2L 19562140 19562169 30 106 53.0 52.0 52.5 0.6 139 chr2L 19562030 exon Tep5 + chr2L 19562100 intron Tep5 + chr2L 19562169 exon Tep5 + chr2L_30_19560001 chr2L_19560001 RAL-303_100b 1152 chr2L 19562506 19562560 chr2L 19562612 19562665 13 104 46.5 51.0 48.8 0.3 159 chr2L 19562506 exon Tep5 + chr2L 19562586 intron Tep5 + chr2L 19562665 exon Tep5 + chr2L_13_19560001 chr2L_19560001 RAL-303_100b 1153 chr2L 19620071 19620119 chr2L 19621085 19621098 jockey 48 1011 23.0 13.0 18.0 2.5 1027 chr2L 19620071 intron Lar + chr2L 19620584 intron Lar + chr2L 19621098 intron Lar + chr2L_48_19620001 chr2L_19620001 RAL-303_100b 1154 chr2L 19620120 19620132 chr2L 19621083 19621135 jockey 9 1002 14.0 12.0 13.0 0.6 1015 chr2L 19620120 intron Lar + chr2L 19620628 intron Lar + chr2L 19621135 intron Lar + chr2L_9_19620001 chr2L_19620001 RAL-303_100b 1155 chr2L 19627295 19627323 chr2L 19627408 19627436 15 109 37.0 47.0 42.0 0.3 141 chr2L 19627295 intron Lar + chr2L 19627366 intron Lar + chr2L 19627436 intron Lar + chr2L_15_19625001 chr2L_19625001 RAL-303_100b 1156 chr2L 19652557 19652601 chr2L 19674005 19674060 opus 49 21454 19.0 17.5 18.2 2.6 21503 chr2L 19652557 intron Lar + chr2L 19663308 intron Lar + chr2L 19674060 intron Lar + chr2L_49_19660001 chr2L_19660001 RAL-303_100b 1157 chr2L 19703513 19703523 chr2L 19712674 19712684 roo 11 9161 48.5 17.0 32.8 0.3 9171 chr2L 19703513 intron Lar + chr2L 19708098 intron Lar + chr2L 19712684 intron Lar + chr2L_11_19705001 chr2L_19705001 RAL-303_100b 1158 chr2L 19703526 19703567 chr2L 19712672 19712717 roo 48 9159 23.5 15.0 19.2 2.4 9191 chr2L 19703526 intron Lar + chr2L 19708122 intron Lar + chr2L 19712717 intron Lar + chr2L_48_19705001 chr2L_19705001 RAL-303_100b 1159 chr2L 19718503 19718519 chr2L 19718616 19718632 11 112 17.5 44.0 30.8 0.3 129 chr2L 19718503 intron Lar + chr2L 19718568 intron Lar + chr2L 19718632 intron Lar + chr2L_11_19715001 chr2L_19715001 RAL-303_100b 1160 chr2L 19737358 19737380 chr2L 19740837 19740849 1360 14 3486 25.5 26.5 26.0 0.5 3491 chr2L 19737358 intergenic Nf-YB + chr2L 19739104 intergenic not near genes chr2L 19740849 intergenic not near genes chr2L_14_19735001 chr2L_19735001 RAL-303_100b 1161 chr2L 19737385 19737386 chr2L 19740820 19740826 1360 4 3437 22.5 19.0 20.8 0.2 3441 chr2L 19737385 intergenic Nf-YB + chr2L 19739106 intergenic not near genes chr2L 19740826 intergenic not near genes chr2L_4_19735001 chr2L_19735001 RAL-303_100b 1162 chr2L 19762783 19762839 chr2L 19763050 19763096 pogo 28 265 11.5 16.5 14.0 1.9 313 chr2L 19762783 exon fbp - chr2L 19762940 intron fbp - chr2L 19763096 intron fbp - chr2L_28_19760001 chr2L_19760001 RAL-303_100b 1163 chr2L 19776245 19776289 chr2L 19776368 19776412 16 120 35.5 45.5 40.5 0.4 167 chr2L 19776245 3` UTR CdGAPr - chr2L 19776328 3` UTR CdGAPr - chr2L 19776412 3` UTR CdGAPr - chr2L_16_19775001 chr2L_19775001 RAL-303_100b 1164 chr2L 19776637 19776658 chr2L 19776742 19776763 19 104 57.5 44.0 50.8 0.4 126 chr2L 19776637 3` UTR CdGAPr - chr2L 19776700 3` UTR CdGAPr - chr2L 19776763 3` UTR CdGAPr - chr2L_19_19775001 chr2L_19775001 RAL-303_100b 1165 chr2L 19821766 19821816 chr2L 19821868 19821913 23 101 40.0 39.5 39.8 0.6 147 chr2L 19821766 intron sick + chr2L 19821840 intron sick + chr2L 19821913 intron sick + chr2L_23_19820001 chr2L_19820001 RAL-303_100b 1166 chr2L 19846237 19846272 chr2L 19846337 19846375 21 105 31.0 51.0 41.0 0.5 138 chr2L 19846237 intron sick + chr2L 19846306 intron sick + chr2L 19846375 intron sick + chr2L_21_19845001 chr2L_19845001 RAL-303_100b 1167 chr2L 19846972 19847015 chr2L 19847064 19847116 19 98 33.5 30.0 31.8 0.6 144 chr2L 19846972 intron sick + chr2L 19847044 intron sick + chr2L 19847116 intron sick + chr2L_19_19845001 chr2L_19845001 RAL-303_100b 1168 chr2L 19878961 19879017 chr2L 19879195 19879251 31 230 38.5 32.5 35.5 0.8 290 chr2L 19878961 intron sick + chr2L 19879106 intron sick + chr2L 19879251 intron sick + chr2L_31_19875001 chr2L_19875001 RAL-303_100b 1169 chr2L 19898937 19898944 chr2L 19899102 19899109 4 165 58.5 37.0 47.8 0.1 172 chr2L 19898937 intron sick + chr2L 19899023 intron sick + chr2L 19899109 intron sick + chr2L_4_19895001 chr2L_19895001 RAL-303_100b 1170 chr2L 19898945 19898990 chr2L 19899098 19899155 20 162 41.0 37.5 39.2 0.5 210 chr2L 19898945 intron sick + chr2L 19899050 intron sick + chr2L 19899155 intron sick + chr2L_20_19895001 chr2L_19895001 RAL-303_100b 1171 chr2L 19901462 19901482 chr2L 19901590 19901610 13 127 55.5 47.5 51.5 0.2 148 chr2L 19901462 intron sick + chr2L 19901536 intron sick + chr2L 19901610 intron sick + chr2L_13_19900001 chr2L_19900001 RAL-303_100b 1172 chr2L 19901486 19901516 chr2L 19901589 19901632 10 121 45.0 47.5 46.2 0.2 146 chr2L 19901486 intron sick + chr2L 19901559 intron sick + chr2L 19901632 intron sick + chr2L_10_19900001 chr2L_19900001 RAL-303_100b 1173 chr2L 19911264 19911320 chr2L 19911377 19911433 39 110 40.0 51.0 45.5 0.8 169 chr2L 19911264 intron,3` UTR sick +,CR43097 - chr2L 19911348 intron,3` UTR sick +,CR43097 - chr2L 19911433 intron,3` UTR sick +,CR43097 - chr2L_39_19910001 chr2L_19910001 RAL-303_100b 1174 chr2L 19935222 19935234 chr2L 19935324 19935335 4 102 51.5 44.5 48.0 0.1 113 chr2L 19935222 intron sick + chr2L 19935278 intron sick + chr2L 19935335 intron sick + chr2L_4_19935001 chr2L_19935001 RAL-303_100b 1175 chr2L 19935235 19935261 chr2L 19935321 19935337 16 92 30.0 42.0 36.0 0.4 102 chr2L 19935235 intron sick + chr2L 19935286 intron sick + chr2L 19935337 intron sick + chr2L_16_19935001 chr2L_19935001 RAL-303_100b 1176 chr2L 19950184 19950205 chr2L 19950291 19950312 17 106 13.5 5.0 9.2 1.7 128 chr2L 19950184 intron sick + chr2L 19950248 intron sick + chr2L 19950312 intron sick + chr2L_17_19950001 chr2L_19950001 RAL-303_100b 1177 chr2L 19969062 19969115 chr2L 19969166 19969218 27 101 45.0 51.0 48.0 0.6 156 chr2L 19969062 3` UTR CG43861 - chr2L 19969140 3` UTR CG43861 - chr2L 19969218 3` UTR CG43861 - chr2L_27_19965001 chr2L_19965001 RAL-303_100b 1178 chr2L 20005849 20005857 chr2L 20010950 20010958 flea 7 5101 40.5 18.0 29.2 0.2 5109 chr2L 20005849 intron CG43861 - chr2L 20008404 intron CG43861 - chr2L 20010958 intron CG43861 - chr2L_7_20005001 chr2L_20005001 RAL-303_100b 1179 chr2L 20005862 20005905 chr2L 20010948 20011006 flea 34 5099 14.0 17.5 15.8 2.0 5144 chr2L 20005862 intron CG43861 - chr2L 20008434 intron CG43861 - chr2L 20011006 intron CG43861 - chr2L_34_20005001 chr2L_20005001 RAL-303_100b 1180 chr2L 20057027 20057076 chr2L 20057129 20057179 18 99 15.0 20.0 17.5 1.0 152 chr2L 20057027 intergenic not near genes chr2L 20057103 intergenic not near genes chr2L 20057179 intergenic not near genes chr2L_18_20055001 chr2L_20055001 RAL-303_100b 1181 chr2L 20079492 20079546 chr2L 20079638 20079672 28 141 41.5 37.5 39.5 0.7 180 chr2L 20079492 intron,intron neb +,fok - chr2L 20079582 intron,intron neb +,fok - chr2L 20079672 intron,intron neb +,fok - chr2L_28_20075001 chr2L_20075001 RAL-303_100b 1182 chr2L 20115551 20115592 chr2L 20115666 20115705 9 113 26.5 31.0 28.8 0.3 154 chr2L 20115551 intergenic not near genes chr2L 20115628 intergenic not near genes chr2L 20115705 intergenic not near genes chr2L_9_20115001 chr2L_20115001 RAL-303_100b 1183 chr2L 20124307 20124361 chr2L 20124410 20124463 15 103 30.5 36.5 33.5 0.4 156 chr2L 20124307 intergenic not near genes chr2L 20124385 intergenic not near genes chr2L 20124463 intergenic not near genes chr2L_15_20120001 chr2L_20120001 RAL-303_100b 1184 chr2L 20269583 20269632 chr2L 20269832 20269834 23 243 45.5 48.0 46.8 0.5 251 chr2L 20269583 intergenic not near genes chr2L 20269708 intergenic not near genes chr2L 20269834 intergenic not near genes chr2L_23_20265001 chr2L_20265001 RAL-303_100b 1185 chr2L 20271240 20271269 chr2L 20271348 20271372 12 107 41.5 39.5 40.5 0.3 132 chr2L 20271240 intergenic not near genes chr2L 20271306 intergenic not near genes chr2L 20271372 intergenic not near genes chr2L_12_20270001 chr2L_20270001 RAL-303_100b 1186 chr2L 20272091 20272141 chr2L 20282827 20282877 copia 46 10735 14.5 24.0 19.2 2.3 10786 chr2L 20272091 intergenic not near genes chr2L 20277484 intergenic not near genes chr2L 20282877 intergenic not near genes chr2L_46_20275001 chr2L_20275001 RAL-303_100b 1187 chr2L 20296491 20296538 chr2L 20296587 20296644 47 104 3.5 8.0 5.8 6.9 153 chr2L 20296491 intergenic CR43414 - chr2L 20296568 intergenic CR43414 - chr2L 20296644 3` UTR CR43414 - chr2L_47_20295001 chr2L_20295001 RAL-303_100b 1188 chr2L 20298798 20298852 chr2L 20298906 20298960 30 107 49.5 46.5 48.0 0.6 162 chr2L 20298798 intergenic not near genes chr2L 20298879 intergenic not near genes chr2L 20298960 intergenic not near genes chr2L_30_20295001 chr2L_20295001 RAL-303_100b 1189 chr2L 20299990 20300020 chr2L 20300091 20300112 6 103 46.5 63.5 55.0 0.1 122 chr2L 20299990 intergenic not near genes chr2L 20300051 intergenic not near genes chr2L 20300112 intergenic not near genes chr2L_6_20300001 chr2L_20300001 RAL-303_100b 1190 chr2L 20302975 20303004 chr2L 20303090 20303114 11 114 34.5 30.0 32.2 0.3 139 chr2L 20302975 intergenic not near genes chr2L 20303044 intergenic not near genes chr2L 20303114 intergenic not near genes chr2L_11_20300001 chr2L_20300001 RAL-303_100b 1191 chr2L 20303147 20303157 chr2L 20310634 20310649 blood 5 7489 16.0 18.0 17.0 0.3 7502 chr2L 20303147 intergenic not near genes chr2L 20306898 intergenic not near genes chr2L 20310649 intergenic not near genes chr2L_5_20305001 chr2L_20305001 RAL-303_100b 1192 chr2L 20303159 20303189 chr2L 20310633 20310682 blood 25 7490 9.5 17.5 13.5 1.7 7523 chr2L 20303159 intergenic not near genes chr2L 20306920 intergenic not near genes chr2L 20310682 intergenic not near genes chr2L_25_20305001 chr2L_20305001 RAL-303_100b 1193 chr2L 20310873 20310874 chr2L 20310977 20310979 4 104 16.0 18.5 17.2 0.2 106 chr2L 20310873 intergenic spir + chr2L 20310926 intergenic spir + chr2L 20310979 intergenic spir + chr2L_4_20310001 chr2L_20310001 RAL-303_100b 1194 chr2L 20310876 20310894 chr2L 20310975 20310998 16 104 6.5 18.0 12.2 1.2 122 chr2L 20310876 intergenic spir + chr2L 20310937 intergenic spir + chr2L 20310998 intergenic spir + chr2L_16_20310001 chr2L_20310001 RAL-303_100b 1195 chr2L 20312512 20312567 chr2L 20312622 20312677 7 110 30.0 27.0 28.5 0.2 165 chr2L 20312512 intron spir + chr2L 20312594 intron spir + chr2L 20312677 intron spir + chr2L_7_20310001 chr2L_20310001 RAL-303_100b 1196 chr2L 20321514 20321523 chr2L 20321609 20321625 4 99 35.5 48.5 42.0 0.1 111 chr2L 20321514 intron spir + chr2L 20321570 intron spir + chr2L 20321625 intron spir + chr2L_4_20320001 chr2L_20320001 RAL-303_100b 1197 chr2L 20372196 20372202 chr2L 20372471 20372477 pogo 4 275 19.0 26.5 22.8 0.2 281 chr2L 20372196 intergenic Ugt37a1 - chr2L 20372336 intergenic Ugt37a1 - chr2L 20372477 exon Ugt37a1 - chr2L_4_20370001 chr2L_20370001 RAL-303_100b 1198 chr2L 20372203 20372239 chr2L 20372469 20372505 pogo 29 269 2.0 24.5 13.2 2.0 302 chr2L 20372203 intergenic Ugt37a1 - chr2L 20372354 intergenic Ugt37a1 - chr2L 20372505 exon Ugt37a1 - chr2L_29_20370001 chr2L_20370001 RAL-303_100b 1199 chr2L 20383426 20383428 chr2L 20383538 20383545 5 116 61.0 45.0 53.0 0.1 119 chr2L 20383426 intergenic not near genes chr2L 20383486 intergenic not near genes chr2L 20383545 intergenic not near genes chr2L_5_20380001 chr2L_20380001 RAL-303_100b 1200 chr2L 20383430 20383471 chr2L 20383530 20383588 31 113 43.5 43.5 43.5 0.7 158 chr2L 20383430 intergenic not near genes chr2L 20383509 intergenic not near genes chr2L 20383588 intergenic not near genes chr2L_31_20380001 chr2L_20380001 RAL-303_100b 1201 chr2L 20474398 20474436 chr2L 20474843 20474864 19 444 23.5 29.5 26.5 0.7 466 chr2L 20474398 intron CR44980 - chr2L 20474631 intron CR44980 - chr2L 20474864 intron CR44980 - chr2L_19_20470001 chr2L_20470001 RAL-303_100b 1202 chr2L 20497999 20498009 chr2L 20498120 20498130 6 121 53.0 44.5 48.8 0.1 131 chr2L 20497999 intergenic not near genes chr2L 20498064 intergenic not near genes chr2L 20498130 intergenic not near genes chr2L_6_20495001 chr2L_20495001 RAL-303_100b 1203 chr2L 20498012 20498055 chr2L 20498119 20498165 32 116 46.0 43.5 44.8 0.7 153 chr2L 20498012 intergenic not near genes chr2L 20498088 intergenic not near genes chr2L 20498165 intergenic not near genes chr2L_32_20495001 chr2L_20495001 RAL-303_100b 1204 chr2L 20498664 20498674 chr2L 20498788 20498798 10 124 36.0 25.0 30.5 0.3 134 chr2L 20498664 intergenic not near genes chr2L 20498731 intergenic not near genes chr2L 20498798 intergenic not near genes chr2L_10_20495001 chr2L_20495001 RAL-303_100b 1205 chr2L 20498675 20498708 chr2L 20498787 20498832 31 121 18.0 23.5 20.8 1.4 157 chr2L 20498675 intergenic not near genes chr2L 20498754 intergenic not near genes chr2L 20498832 intergenic not near genes chr2L_31_20495001 chr2L_20495001 RAL-303_100b 1206 chr2L 20502966 20502989 chr2L 20508342 20508368 18 5377 86.0 71.5 78.8 0.2 5402 chr2L 20502966 intergenic not near genes chr2L 20505667 intergenic not near genes chr2L 20508368 intergenic not near genes chr2L_18_20505001 chr2L_20505001 RAL-303_100b 1207 chr2L 20502963 20503017 chr2L 20508369 20508393 10 5385 93.5 59.0 76.2 0.1 5430 chr2L 20502963 intergenic not near genes chr2L 20505678 intergenic not near genes chr2L 20508393 intergenic not near genes chr2L_10_20505001 chr2L_20505001 RAL-303_100b 1208 chr2L 20513576 20513606 chr2L 20513693 20513723 12 115 37.5 32.5 35.0 0.3 147 chr2L 20513576 intergenic CR45702 + chr2L 20513650 intergenic CR45702 + chr2L 20513723 intergenic CR45702 + chr2L_12_20510001 chr2L_20510001 RAL-303_100b 1209 chr2L 20524164 20524189 chr2L 20524271 20524296 8 107 17.5 0.0 8.8 0.8 132 chr2L 20524164 intergenic not near genes chr2L 20524230 intergenic not near genes chr2L 20524296 intergenic not near genes chr2L_8_20520001 chr2L_20520001 RAL-303_100b 1210 chr2L 20525821 20525831 chr2L 20525923 20525933 4 102 36.5 27.5 32.0 0.1 112 chr2L 20525821 intergenic not near genes chr2L 20525877 intergenic not near genes chr2L 20525933 intergenic not near genes chr2L_4_20525001 chr2L_20525001 RAL-303_100b 1211 chr2L 20533834 20533860 chr2L 20533936 20533962 9 101 33.5 41.0 37.2 0.2 128 chr2L 20533834 intergenic not near genes chr2L 20533898 intergenic not near genes chr2L 20533962 intergenic not near genes chr2L_9_20530001 chr2L_20530001 RAL-303_100b 1212 chr2L 20549106 20549156 chr2L 20549213 20549263 33 105 53.0 43.5 48.2 0.7 157 chr2L 20549106 intergenic not near genes chr2L 20549184 intergenic not near genes chr2L 20549263 intergenic not near genes chr2L_33_20545001 chr2L_20545001 RAL-303_100b 1213 chr2L 20550605 20550669 chr2L 20550716 20550774 11 110 2.0 15.0 8.5 1.2 169 chr2L 20550605 intergenic not near genes chr2L 20550690 intergenic not near genes chr2L 20550774 intergenic not near genes chr2L_11_20550001 chr2L_20550001 RAL-303_100b 1214 chr2L 20553160 20553217 chr2L 20553261 20553318 56 100 16.0 13.0 14.5 3.6 158 chr2L 20553160 intergenic not near genes chr2L 20553239 intergenic not near genes chr2L 20553318 intergenic not near genes chr2L_56_20550001 chr2L_20550001 RAL-303_100b 1215 chr2L 20563530 20563543 chr2L 20563632 20563644 6 102 44.0 45.0 44.5 0.1 114 chr2L 20563530 intron CR45347 + chr2L 20563587 intron CR45347 + chr2L 20563644 intron CR45347 + chr2L_6_20560001 chr2L_20560001 RAL-303_100b 1216 chr2L 20563544 20563561 chr2L 20563631 20563636 10 95 42.5 45.0 43.8 0.2 92 chr2L 20563544 intron CR45347 + chr2L 20563590 intron CR45347 + chr2L 20563636 intron CR45347 + chr2L_10_20560001 chr2L_20560001 RAL-303_100b 1217 chr2L 20568637 20568687 chr2L 20569052 20569098 X-element 50 413 16.5 12.0 14.2 3.3 461 chr2L 20568637 intron CR45347 + chr2L 20568868 intron CR45347 + chr2L 20569098 intron CR45347 + chr2L_50_20565001 chr2L_20565001 RAL-303_100b 1218 chr2L 20572956 20572965 chr2L 20573061 20573072 7 108 29.0 43.5 36.2 0.2 116 chr2L 20572956 intron CR45347 + chr2L 20573014 intron CR45347 + chr2L 20573072 intron CR45347 + chr2L_7_20570001 chr2L_20570001 RAL-303_100b 1219 chr2L 20572968 20572995 chr2L 20573050 20573105 14 106 30.0 39.0 34.5 0.4 137 chr2L 20572968 intron CR45347 + chr2L 20573036 intron CR45347 + chr2L 20573105 intron CR45347 + chr2L_14_20570001 chr2L_20570001 RAL-303_100b 1220 chr2L 20576195 20576199 chr2L 20583689 20583693 blood 7 7494 24.0 10.5 17.2 0.4 7498 chr2L 20576195 intergenic CR45347 + chr2L 20579944 intergenic not near genes chr2L 20583693 3` UTR CR44909 - chr2L_7_20575001 chr2L_20575001 RAL-303_100b 1221 chr2L 20576202 20576245 chr2L 20583685 20583738 blood 47 7490 10.5 9.0 9.8 4.4 7536 chr2L 20576202 intergenic CR45347 + chr2L 20579970 intergenic not near genes chr2L 20583738 3` UTR CR44909 - chr2L_47_20575001 chr2L_20575001 RAL-303_100b 1222 chr2L 20589474 20589525 chr2L 20589571 20589627 40 99 52.5 45.5 49.0 0.8 153 chr2L 20589474 intron CR44909 - chr2L 20589550 intron CR44909 - chr2L 20589627 intron CR44909 - chr2L_40_20585001 chr2L_20585001 RAL-303_100b 1223 chr2L 20597063 20597117 chr2L 20597165 20597219 19 97 39.5 41.5 40.5 0.5 156 chr2L 20597063 intron CR44909 - chr2L 20597141 intron CR44909 - chr2L 20597219 intron CR44909 - chr2L_19_20595001 chr2L_20595001 RAL-303_100b 1224 chr2L 20601762 20601816 chr2L 20601865 20601899 14 100 36.0 28.0 32.0 0.4 137 chr2L 20601762 intron CR44909 - chr2L 20601830 intron CR44909 - chr2L 20601899 intron CR44909 - chr2L_14_20600001 chr2L_20600001 RAL-303_100b 1225 chr2L 20602711 20602732 chr2L 20602824 20602845 9 113 31.5 41.5 36.5 0.2 134 chr2L 20602711 intron CR44909 - chr2L 20602778 intron CR44909 - chr2L 20602845 intron CR44909 - chr2L_9_20600001 chr2L_20600001 RAL-303_100b 1226 chr2L 20602733 20602745 chr2L 20602807 20602858 7 106 27.0 38.5 32.8 0.2 125 chr2L 20602733 intron CR44909 - chr2L 20602796 intron CR44909 - chr2L 20602858 intron CR44909 - chr2L_7_20600001 chr2L_20600001 RAL-303_100b 1227 chr2L 20607621 20607667 chr2L 20607723 20607766 26 96 8.0 17.0 12.5 1.9 145 chr2L 20607621 intron,3` UTR CR44909 -,CR43608 - chr2L 20607694 intron,3` UTR CR44909 -,CR43608 - chr2L 20607766 intron,3` UTR CR44909 -,CR43608 - chr2L_26_20605001 chr2L_20605001 RAL-303_100b 1228 chr2L 20630685 20630745 chr2L 20630988 20631045 22 302 29.5 41.5 35.5 0.6 360 chr2L 20630685 intergenic not near genes chr2L 20630865 intergenic not near genes chr2L 20631045 intergenic not near genes chr2L_22_20630001 chr2L_20630001 RAL-303_100b 1229 chr2L 20639476 20639529 chr2L 20639775 20639828 INE-1 22 298 54.0 44.5 49.2 0.4 352 chr2L 20639476 intergenic not near genes chr2L 20639652 intergenic CG31680 + chr2L 20639828 intergenic CG31680 + chr2L_22_20635001 chr2L_20635001 RAL-303_100b 1230 chr2L 20643322 20643338 chr2L 20643474 20643479 12 155 48.5 26.5 37.5 0.3 157 chr2L 20643322 intergenic phr6-4 -,CG17470 - chr2L 20643400 3` UTR phr6-4 - chr2L 20643479 3` UTR phr6-4 - chr2L_12_20640001 chr2L_20640001 RAL-303_100b 1231 chr2L 20674805 20674864 chr2L 20674915 20674967 45 104 9.0 4.0 6.5 6.0 162 chr2L 20674805 intron CG31678 - chr2L 20674886 intron CG31678 - chr2L 20674967 intron CG31678 - chr2L_45_20670001 chr2L_20670001 RAL-303_100b 1232 chr2L 20695770 20695829 chr2L 20695882 20695942 27 111 45.0 43.5 44.2 0.6 172 chr2L 20695770 intron Hr38 - chr2L 20695856 intron Hr38 - chr2L 20695942 intron Hr38 - chr2L_27_20695001 chr2L_20695001 RAL-303_100b 1233 chr2L 20807094 20807141 chr2L 20807192 20807206 23 94 37.5 40.5 39.0 0.6 112 chr2L 20807094 intron CG9328 + chr2L 20807150 intron CG9328 + chr2L 20807206 intron CG9328 + chr2L_23_20805001 chr2L_20805001 RAL-303_100b 1234 chr2L 20826504 20826511 chr2L 20826604 20826616 12 104 45.0 46.5 45.8 0.3 112 chr2L 20826504 intron CG9331 + chr2L 20826560 intron CG9331 + chr2L 20826616 intron CG9331 + chr2L_12_20825001 chr2L_20825001 RAL-303_100b 1235 chr2L 20826512 20826544 chr2L 20826596 20826649 26 102 40.0 43.5 41.8 0.6 137 chr2L 20826512 intron CG9331 + chr2L 20826580 intron CG9331 + chr2L 20826649 exon CG9331 + chr2L_26_20825001 chr2L_20825001 RAL-303_100b 1236 chr2L 20835785 20835788 chr2L 20836527 20836530 Quasimodo 4 742 28.5 12.0 20.2 0.2 745 chr2L 20835785 5` UTR Oseg5 - chr2L 20836158 intergenic Oseg5 -,Spn38F - chr2L 20836530 intergenic Spn38F - chr2L_4_20835001 chr2L_20835001 RAL-303_100b 1237 chr2L 20835789 20835839 chr2L 20836525 20836581 Quasimodo 31 740 12.5 12.0 12.2 2.3 792 chr2L 20835789 5` UTR Oseg5 - chr2L 20836185 intergenic Oseg5 -,Spn38F - chr2L 20836581 intergenic Spn38F - chr2L_31_20835001 chr2L_20835001 RAL-303_100b 1238 chr2L 20840002 20840012 chr2L 20840238 20840244 8 236 59.0 23.5 41.2 0.2 242 chr2L 20840002 intergenic not near genes chr2L 20840123 intergenic not near genes chr2L 20840244 intergenic not near genes chr2L_8_20840001 chr2L_20840001 RAL-303_100b 1239 chr2L 20840014 20840057 chr2L 20840236 20840291 18 232 38.0 22.5 30.2 0.6 277 chr2L 20840014 intergenic not near genes chr2L 20840152 intergenic not near genes chr2L 20840291 intergenic CG31676 + chr2L_18_20840001 chr2L_20840001 RAL-303_100b 1240 chr2L 20846738 20846786 chr2L 20846847 20846895 19 108 55.0 48.0 51.5 0.4 157 chr2L 20846738 intron CG31676 + chr2L 20846816 intron CG31676 + chr2L 20846895 intron CG31676 + chr2L_19_20845001 chr2L_20845001 RAL-303_100b 1241 chr2L 20862589 20862595 chr2L 20862705 20862717 4 120 27.5 41.5 34.5 0.1 128 chr2L 20862589 intergenic not near genes chr2L 20862653 intergenic not near genes chr2L 20862717 intergenic not near genes chr2L_4_20860001 chr2L_20860001 RAL-303_100b 1242 chr2L 20863658 20863662 chr2L 20863776 20863780 4 118 30.0 52.0 41.0 0.1 122 chr2L 20863658 intergenic not near genes chr2L 20863719 intergenic not near genes chr2L 20863780 intergenic not near genes chr2L_4_20860001 chr2L_20860001 RAL-303_100b 1243 chr2L 20891511 20891566 chr2L 20896636 20896691 jockey 30 5125 11.5 19.5 15.5 1.8 5180 chr2L 20891511 intron,intron CG43739 -,sky - chr2L 20894101 intron,intron CG43739 -,sky - chr2L 20896691 intron,intron CG43739 -,sky - chr2L_30_20890001 chr2L_20890001 RAL-303_100b 1244 chr2L 20901428 20901479 chr2L 20902617 20902668 1360 16 1188 17.5 22.5 20.0 0.8 1240 chr2L 20901428 intron,intron CG43739 -,sky - chr2L 20902048 intron,intron CG43739 -,sky - chr2L 20902668 intron,intron CG43739 -,sky - chr2L_16_20900001 chr2L_20900001 RAL-303_100b 1245 chr2L 20911010 20911060 chr2L 20911104 20911161 40 99 54.5 52.0 53.2 0.7 151 chr2L 20911010 intron,intron CG43739 -,sky - chr2L 20911086 intron,intron CG43739 -,sky - chr2L 20911161 intron,intron CG43739 -,sky - chr2L_40_20910001 chr2L_20910001 RAL-303_100b 1246 chr2L 20928904 20928912 chr2L 20929464 20929477 4 564 37.0 52.0 44.5 0.1 573 chr2L 20928904 intergenic not near genes chr2L 20929190 intergenic CG9270 - chr2L 20929477 3` UTR CG9270 - chr2L_4_20925001 chr2L_20925001 RAL-303_100b 1247 chr2L 20946919 20946960 chr2L 20947031 20947052 24 106 25.0 21.5 23.2 1.0 133 chr2L 20946919 intergenic CR44606 - chr2L 20946986 intergenic CR44606 - chr2L 20947052 intergenic CR44606 - chr2L_24_20945001 chr2L_20945001 RAL-303_100b 1248 chr2L 20967058 20967104 chr2L 20967169 20967214 30 109 40.5 39.5 40.0 0.7 156 chr2L 20967058 3` UTR CG42238 - chr2L 20967136 3` UTR CG42238 - chr2L 20967214 3` UTR CG42238 - chr2L_30_20965001 chr2L_20965001 RAL-303_100b 1249 chr2L 20976627 20976673 chr2L 20981467 20981502 X-element 46 4837 17.5 21.5 19.5 2.2 4875 chr2L 20976627 intron CG42238 - chr2L 20979064 intron CG42238 - chr2L 20981502 intron CG42238 - chr2L_46_20975001 chr2L_20975001 RAL-303_100b 1250 chr2L 20991019 20991050 chr2L 20991122 20991153 27 101 62.5 56.5 59.5 0.4 134 chr2L 20991019 intron CG42238 - chr2L 20991086 intron CG42238 - chr2L 20991153 intron CG42238 - chr2L_27_20990001 chr2L_20990001 RAL-303_100b 1251 chr2L 20991051 20991064 chr2L 20991113 20991167 9 97 58.0 58.5 58.2 0.2 116 chr2L 20991051 intron CG42238 - chr2L 20991109 intron CG42238 - chr2L 20991167 intron CG42238 - chr2L_9_20990001 chr2L_20990001 RAL-303_100b 1252 chr2L 21020251 21020297 chr2L 21023953 21023999 NOF 39 3701 18.5 19.5 19.0 1.9 3748 chr2L 21020251 intron CG42238 - chr2L 21022125 intron CG42238 - chr2L 21023999 intron CG42238 - chr2L_39_21020001 chr2L_21020001 RAL-303_100b 1253 chr2L 21020300 21020310 chr2L 21023950 21023996 NOF 7 3689 13.0 17.0 15.0 0.4 3696 chr2L 21020300 intron CG42238 - chr2L 21022148 intron CG42238 - chr2L 21023996 intron CG42238 - chr2L_7_21020001 chr2L_21020001 RAL-303_100b 1254 chr2L 21041115 21041168 chr2L 21049401 21049427 Tirant 58 8283 13.5 18.5 16.0 3.4 8312 chr2L 21041115 intron CG42238 - chr2L 21045271 intron CG42238 - chr2L 21049427 intron CG42238 - chr2L_58_21045001 chr2L_21045001 RAL-303_100b 1255 chr2L 21074899 21074952 chr2L 21075015 21075068 19 114 36.5 42.0 39.2 0.5 169 chr2L 21074899 intergenic not near genes chr2L 21074984 intergenic tadr + chr2L 21075068 intergenic tadr + chr2L_19_21070001 chr2L_21070001 RAL-303_100b 1256 chr2L 21086419 21086445 chr2L 21086552 21086585 10 139 49.5 56.5 53.0 0.2 166 chr2L 21086419 5` UTR CG33509 - chr2L 21086502 5` UTR CG33509 - chr2L 21086585 intergenic CG33509 -,ppk13 - chr2L_10_21085001 chr2L_21085001 RAL-303_100b 1257 chr2L 21086447 21086450 chr2L 21086548 21086590 4 120 48.0 54.5 51.2 0.1 143 chr2L 21086447 5` UTR CG33509 - chr2L 21086518 intergenic CG33509 -,ppk13 - chr2L 21086590 intergenic CG33509 -,ppk13 - chr2L_4_21085001 chr2L_21085001 RAL-303_100b 1258 chr2L 21088896 21088949 chr2L 21089004 21089050 31 106 36.5 39.5 38.0 0.8 154 chr2L 21088896 intergenic ppk13 -,CG9259 + chr2L 21088973 intergenic ppk13 -,CG9259 + chr2L 21089050 intergenic ppk13 -,CG9259 + chr2L_31_21085001 chr2L_21085001 RAL-303_100b 1259 chr2L 21119261 21119314 chr2L 21119370 21119423 31 107 51.5 51.5 51.5 0.6 162 chr2L 21119261 intron Nhe2 + chr2L 21119342 intron Nhe2 + chr2L 21119423 intron Nhe2 + chr2L_31_21115001 chr2L_21115001 RAL-303_100b 1260 chr2L 21245260 21245303 chr2L 21245518 21245559 35 261 23.5 46.0 34.8 1.0 299 chr2L 21245260 intron Hr39 + chr2L 21245410 intron Hr39 + chr2L 21245559 intron Hr39 + chr2L_35_21245001 chr2L_21245001 RAL-303_100b 1261 chr2L 21246488 21246502 chr2L 21246608 21246622 14 118 60.5 50.0 55.2 0.2 134 chr2L 21246488 intron Hr39 + chr2L 21246555 intron Hr39 + chr2L 21246622 intron Hr39 + chr2L_14_21245001 chr2L_21245001 RAL-303_100b 1262 chr2L 21246508 21246522 chr2L 21246607 21246632 4 98 54.5 50.0 52.2 0.1 124 chr2L 21246508 intron Hr39 + chr2L 21246570 intron Hr39 + chr2L 21246632 intron Hr39 + chr2L_4_21245001 chr2L_21245001 RAL-303_100b 1263 chr2L 21246527 21246537 chr2L 21246603 21246657 13 98 50.0 48.5 49.2 0.3 130 chr2L 21246527 intron Hr39 + chr2L 21246592 intron Hr39 + chr2L 21246657 intron Hr39 + chr2L_13_21245001 chr2L_21245001 RAL-303_100b 1264 chr2L 21286582 21286632 chr2L 21286685 21286723 22 100 43.0 48.5 45.8 0.5 141 chr2L 21286582 exon Mio - chr2L 21286652 intron Mio - chr2L 21286723 intron Mio - chr2L_22_21285001 chr2L_21285001 RAL-303_100b 1265 chr2L 21347527 21347580 chr2L 21355024 21355077 blood 38 7496 16.5 8.0 12.2 2.9 7550 chr2L 21347527 intron Tsp39D + chr2L 21351302 intron Tsp39D + chr2L 21355077 intron Tsp39D + chr2L_38_21350001 chr2L_21350001 RAL-303_100b 1266 chr2L 21355581 21355635 chr2L 21355751 21355805 52 168 15.0 11.0 13.0 3.7 224 chr2L 21355581 exon Tsp39D + chr2L 21355693 intron Tsp39D + chr2L 21355805 intron Tsp39D + chr2L_52_21355001 chr2L_21355001 RAL-303_100b 1267 chr2L 21392189 21392238 chr2L 21392300 21392333 18 106 23.5 26.0 24.8 0.7 144 chr2L 21392189 3` UTR nrv3 + chr2L 21392261 3` UTR nrv3 + chr2L 21392333 3` UTR nrv3 + chr2L_18_21390001 chr2L_21390001 RAL-303_100b 1268 chr2L 21597024 21597059 chr2L 21604790 21604828 roo 32 7767 15.0 26.0 20.5 1.5 7804 chr2L 21597024 intergenic not near genes chr2L 21600926 intergenic not near genes chr2L 21604828 intergenic not near genes chr2L_32_21600001 chr2L_21600001 RAL-303_100b 1269 chr2L 21618272 21618300 chr2L 21618477 21618505 13 205 25.0 25.5 25.2 0.5 233 chr2L 21618272 intron CG2201 - chr2L 21618388 intron CG2201 - chr2L 21618505 intron CG2201 - chr2L_13_21615001 chr2L_21615001 RAL-303_100b 1270 chr2L 21683857 21683895 chr2L 21683965 21683966 14 103 51.5 61.5 56.5 0.2 109 chr2L 21683857 intergenic CG31619 + chr2L 21683912 intergenic CG31619 + chr2L 21683966 intergenic CG31619 + chr2L_14_21680001 chr2L_21680001 RAL-303_100b 1271 chr2L 21691803 21691842 chr2L 21698298 21698328 Burdock 14 6493 36.5 11.5 24.0 0.6 6525 chr2L 21691803 intron CG31619 + chr2L 21695066 intron CG31619 + chr2L 21698328 intron CG31619 + chr2L_14_21695001 chr2L_21695001 RAL-303_100b 1272 chr2L 21740060 21740112 chr2L 21740183 21740235 13 122 21.0 33.0 27.0 0.5 175 chr2L 21740060 3` UTR step - chr2L 21740148 3` UTR step - chr2L 21740235 3` UTR step - chr2L_13_21740001 chr2L_21740001 RAL-303_100b 1273 chr2L 21750083 21750134 chr2L 21750427 21750481 14 346 35.0 33.5 34.2 0.4 398 chr2L 21750083 intron step - chr2L 21750282 intron step - chr2L 21750481 intron step - chr2L_14_21750001 chr2L_21750001 RAL-303_100b 1274 chr2L 21754641 21754691 chr2L 21754747 21754775 16 102 28.5 33.0 30.8 0.5 134 chr2L 21754641 intron step - chr2L 21754708 intron step - chr2L 21754775 intron step - chr2L_16_21750001 chr2L_21750001 RAL-303_100b 1275 chr2L 21771964 21771975 chr2L 21772068 21772079 7 104 60.0 43.5 51.8 0.1 115 chr2L 21771964 intron CG31612 - chr2L 21772022 intron CG31612 - chr2L 21772079 intron CG31612 - chr2L_7_21770001 chr2L_21770001 RAL-303_100b 1276 chr2L 21771976 21772013 chr2L 21772064 21772116 17 102 47.5 40.0 43.8 0.4 140 chr2L 21771976 intron CG31612 - chr2L 21772046 intron CG31612 - chr2L 21772116 intron CG31612 - chr2L_17_21770001 chr2L_21770001 RAL-303_100b 1277 chr2L 21772703 21772759 chr2L 21773328 21773347 26 622 47.0 45.0 46.0 0.6 644 chr2L 21772703 intron CG31612 - chr2L 21773025 exon CG31612 - chr2L 21773347 exon CG31612 - chr2L_26_21770001 chr2L_21770001 RAL-303_100b 1278 chr2L 21819306 21819342 chr2L 21819419 21819455 17 110 38.5 41.5 40.0 0.4 149 chr2L 21819306 intergenic CR44786 + chr2L 21819380 intergenic CR44786 + chr2L 21819455 intergenic CR44786 + chr2L_17_21815001 chr2L_21815001 RAL-303_100b 1279 chr2L 21819345 21819360 chr2L 21819418 21819473 10 106 38.0 41.0 39.5 0.2 128 chr2L 21819345 intergenic CR44786 + chr2L 21819409 intergenic CR44786 + chr2L 21819473 intergenic CR44786 + chr2L_10_21815001 chr2L_21815001 RAL-303_100b 1280 chr2L 21824101 21824144 chr2L 21824212 21824251 20 109 24.0 38.5 31.2 0.6 150 chr2L 21824101 intergenic not near genes chr2L 21824176 intergenic not near genes chr2L 21824251 intergenic not near genes chr2L_20_21820001 chr2L_21820001 RAL-303_100b 1281 chr2L 21855453 21855511 chr2L 21855564 21855623 15 109 36.0 36.0 36.0 0.4 170 chr2L 21855453 intron CR44917 + chr2L 21855538 intron CR44917 + chr2L 21855623 intron CR44917 + chr2L_15_21855001 chr2L_21855001 RAL-303_100b 1282 chr2L 21869070 21869071 chr2L 21869179 21869185 4 112 59.0 45.5 52.2 0.1 115 chr2L 21869070 5` UTR CR44917 + chr2L 21869128 5` UTR CR44917 + chr2L 21869185 5` UTR CR44917 + chr2L_4_21865001 chr2L_21865001 RAL-303_100b 1283 chr2L 21869074 21869096 chr2L 21869178 21869183 13 103 50.5 43.5 47.0 0.3 109 chr2L 21869074 5` UTR CR44917 + chr2L 21869128 5` UTR CR44917 + chr2L 21869183 5` UTR CR44917 + chr2L_13_21865001 chr2L_21865001 RAL-303_100b 1284 chr2L 21933896 21933922 chr2L 21934002 21934021 12 104 29.5 30.0 29.8 0.4 125 chr2L 21933896 intergenic not near genes chr2L 21933958 intergenic not near genes chr2L 21934021 intergenic not near genes chr2L_12_21930001 chr2L_21930001 RAL-303_100b 1285 chr2L 21953792 21953849 chr2L 21954668 21954725 37 880 90.5 109.5 100.0 0.4 933 chr2L 21953792 intergenic not near genes chr2L 21954258 intergenic not near genes chr2L 21954725 intergenic not near genes chr2L_37_21950001 chr2L_21950001 RAL-303_100b 1286 chr2L 21976164 21976216 chr2L 21976355 21976401 28 185 46.0 38.0 42.0 0.7 237 chr2L 21976164 intergenic not near genes chr2L 21976282 intergenic not near genes chr2L 21976401 intergenic not near genes chr2L_28_21975001 chr2L_21975001 RAL-303_100b 1287 chr2L 21981667 21981711 chr2L 21990849 21990886 roo 46 9187 11.5 23.0 17.2 2.5 9219 chr2L 21981667 exon CG2528 - chr2L 21986276 intron CG2528 - chr2L 21990886 exon CG2528 - chr2L_46_21985001 chr2L_21985001 RAL-303_100b 1288 chr2L 21994596 21994649 chr2L 21994697 21994750 28 100 39.0 33.5 36.2 0.8 154 chr2L 21994596 intergenic not near genes chr2L 21994673 intergenic not near genes chr2L 21994750 intergenic not near genes chr2L_28_21990001 chr2L_21990001 RAL-303_100b 1289 chr2L 21996922 21996939 chr2L 21997028 21997045 14 106 49.0 51.0 50.0 0.3 123 chr2L 21996922 intergenic not near genes chr2L 21996984 intergenic not near genes chr2L 21997045 intergenic not near genes chr2L_14_21995001 chr2L_21995001 RAL-303_100b 1290 chr2L 21996941 21996974 chr2L 21997026 21997080 17 103 42.5 49.5 46.0 0.4 139 chr2L 21996941 intergenic not near genes chr2L 21997010 intergenic not near genes chr2L 21997080 intergenic not near genes chr2L_17_21995001 chr2L_21995001 RAL-303_100b 1291 chr2L 22001626 22001675 chr2L 22001727 22001776 14 101 28.0 28.5 28.2 0.5 150 chr2L 22001626 intergenic not near genes chr2L 22001701 intergenic not near genes chr2L 22001776 intergenic not near genes chr2L_14_22000001 chr2L_22000001 RAL-303_100b 1292 chr2L 22007906 22007951 chr2L 22008013 22008058 9 107 10.0 5.0 7.5 1.1 152 chr2L 22007906 intergenic not near genes chr2L 22007982 intergenic not near genes chr2L 22008058 intergenic not near genes chr2L_9_22005001 chr2L_22005001 RAL-303_100b 1293 chr2L 22025802 22025844 chr2L 22025907 22025948 14 102 45.0 43.0 44.0 0.3 146 chr2L 22025802 intergenic tio + chr2L 22025875 intergenic tio + chr2L 22025948 intergenic tio + chr2L_14_22025001 chr2L_22025001 RAL-303_100b 1294 chr2L 22047229 22047257 chr2L 22047379 22047390 22 145 11.0 23.5 17.2 1.2 161 chr2L 22047229 intergenic not near genes chr2L 22047310 intergenic not near genes chr2L 22047390 intergenic not near genes chr2L_22_22045001 chr2L_22045001 RAL-303_100b 1295 chr2L 22102439 22102501 chr2L 22102628 22102673 12 185 17.5 50.5 34.0 0.3 234 chr2L 22102439 intergenic CG31703 - chr2L 22102556 intergenic CG31703 - chr2L 22102673 3` UTR CG31703 - chr2L_12_22100001 chr2L_22100001 RAL-303_100b 1296 chr2L 22107349 22107390 chr2L 22107501 22107509 13 148 34.0 29.5 31.8 0.4 160 chr2L 22107349 intergenic CG10834 - chr2L 22107429 intergenic CG10834 - chr2L 22107509 intergenic CG10834 - chr2L_13_22105001 chr2L_22105001 RAL-303_100b 1297 chr2L 22148338 22148355 chr2L 22148446 22148471 11 116 60.5 69.0 64.8 0.2 133 chr2L 22148338 intron CG42748 + chr2L 22148404 intron CG42748 + chr2L 22148471 intron CG42748 + chr2L_11_22145001 chr2L_22145001 RAL-303_100b 1298 chr2L 22165497 22165541 chr2L 22165603 22165651 20 109 31.5 28.5 30.0 0.6 154 chr2L 22165497 3` UTR CG42748 + chr2L 22165574 3` UTR CG42748 + chr2L 22165651 3` UTR CG42748 + chr2L_20_22165001 chr2L_22165001 RAL-303_100b 1299 chr2L 22212111 22212159 chr2L 22212683 22212731 41 572 3.5 9.5 6.5 5.5 620 chr2L 22212111 intron Ir40a - chr2L 22212421 intron Ir40a - chr2L 22212731 exon Ir40a - chr2L_41_22210001 chr2L_22210001 RAL-303_100b 1300 chr2L 22215885 22215939 chr2L 22215996 22216041 53 110 16.5 18.0 17.2 2.9 156 chr2L 22215885 intergenic not near genes chr2L 22215963 intergenic not near genes chr2L 22216041 intergenic not near genes chr2L_53_22215001 chr2L_22215001 RAL-303_100b 1301 chr2L 22239402 22239458 chr2L 22239508 22239564 37 105 56.0 50.5 53.2 0.7 162 chr2L 22239402 intron CR43765 - chr2L 22239483 3` UTR CR43765 - chr2L 22239564 3` UTR CR43765 - chr2L_37_22235001 chr2L_22235001 RAL-303_100b 1302 chr2L 22258595 22258614 chr2L 22260744 22260763 G6 19 2149 41.0 19.0 30.0 0.6 2168 chr2L 22258595 intergenic Tif-IA + chr2L 22259679 intergenic not near genes chr2L 22260763 intergenic not near genes chr2L_19_22255001 chr2L_22255001 RAL-303_100b 1303 chr2L 22258617 22258623 chr2L 22260740 22260772 G6 6 2142 33.5 17.5 25.5 0.2 2155 chr2L 22258617 intergenic Tif-IA + chr2L 22259694 intergenic not near genes chr2L 22260772 intergenic not near genes chr2L_6_22255001 chr2L_22255001 RAL-303_100b 1304 chr2L 22258624 22258646 chr2L 22260738 22260795 G6 27 2147 18.5 16.5 17.5 1.5 2171 chr2L 22258624 intergenic Tif-IA + chr2L 22259710 intergenic not near genes chr2L 22260795 intergenic not near genes chr2L_27_22255001 chr2L_22255001 RAL-303_100b 1305 chr2L 22294081 22294088 chr2L 22294184 22294193 6 104 59.5 43.0 51.2 0.1 112 chr2L 22294081 intergenic not near genes chr2L 22294137 intergenic not near genes chr2L 22294193 intergenic not near genes chr2L_6_22290001 chr2L_22290001 RAL-303_100b 1306 chr2L 22294090 22294365 chr2L 22294182 22294478 29 105 33.5 40.5 37.0 0.8 388 chr2L 22294090 intergenic not near genes chr2L 22294284 intergenic not near genes chr2L 22294478 intergenic not near genes chr2L_29_22290001 chr2L_22290001 RAL-303_100b 1307 chr2L 22296893 22296925 chr2L 22297045 22297077 11 150 10.0 25.0 17.5 0.6 184 chr2L 22296893 intergenic not near genes chr2L 22296985 intergenic not near genes chr2L 22297077 intergenic not near genes chr2L_11_22295001 chr2L_22295001 RAL-303_100b 1308 chr2L 22350243 22350293 chr2L 22350370 22350420 26 126 39.0 41.5 40.2 0.6 177 chr2L 22350243 intron CG17018 + chr2L 22350332 intron CG17018 + chr2L 22350420 intron CG17018 + chr2L_26_22350001 chr2L_22350001 RAL-303_100b 1309 chr2L 22510385 22510412 chr2L 22510619 22510643 15 233 45.0 29.5 37.2 0.4 258 chr2L 22510385 intergenic not near genes chr2L 22510514 intergenic not near genes chr2L 22510643 intergenic not near genes chr2L_15_22510001 chr2L_22510001 RAL-303_100b 1310 chr2L 22513523 22513534 chr2L 22514629 22514640 4 1106 36.0 45.5 40.8 0.1 1117 chr2L 22513523 intergenic not near genes chr2L 22514082 intergenic not near genes chr2L 22514640 intergenic not near genes chr2L_4_22510001 chr2L_22510001 RAL-303_100b 1311 chr2L 22515124 22515152 chr2L 22522599 22522622 HMS-Beagle2 10 7474 37.0 28.0 32.5 0.3 7498 chr2L 22515124 intergenic not near genes chr2L 22518873 intergenic not near genes chr2L 22522622 intergenic not near genes chr2L_10_22515001 chr2L_22515001 RAL-303_100b 1312 chr2L 22548922 22548941 chr2L 22550143 22550191 1360 13 1247 28.0 51.5 39.8 0.3 1269 chr2L 22548922 intergenic CG17490 + chr2L 22549556 intergenic not near genes chr2L 22550191 intergenic CG17493 + chr2L_13_22545001 chr2L_22545001 RAL-303_100b 1313 chr2L 22574139 22574150 chr2L 22574469 22574480 7 336 45.5 67.0 56.2 0.1 341 chr2L 22574139 intergenic not near genes chr2L 22574310 intergenic not near genes chr2L 22574480 intergenic not near genes chr2L_7_22570001 chr2L_22570001 RAL-303_100b 1314 chr2L 22581946 22581999 chr2L 22583760 22583813 S-element 40 1812 19.0 16.0 17.5 2.2 1867 chr2L 22581946 intron CG17494 + chr2L 22582880 intron CG17494 + chr2L 22583813 intron CG17494 + chr2L_40_22580001 chr2L_22580001 RAL-303_100b 1315 chr2L 22642638 22642670 chr2L 22642739 22642751 18 99 50.0 43.0 46.5 0.4 113 chr2L 22642638 intron CG40006 - chr2L 22642694 intron CG40006 - chr2L 22642751 intron CG40006 - chr2L_18_22640001 chr2L_22640001 RAL-303_100b 1316 chr2L 22674051 22674076 chr2L 22674153 22674167 15 100 47.0 43.0 45.0 0.3 116 chr2L 22674051 intron CG40006 - chr2L 22674109 intron CG40006 - chr2L 22674167 intron CG40006 - chr2L_15_22670001 chr2L_22670001 RAL-303_100b 1317 chr2L 22679804 22679822 chr2L 22684567 22684619 F-element 11 4788 43.5 11.5 27.5 0.4 4815 chr2L 22679804 intron CG40006 - chr2L 22682212 intron CG40006 - chr2L 22684619 intron CG40006 - chr2L_11_22680001 chr2L_22680001 RAL-303_100b 1318 chr2L 22706781 22706835 chr2L 22706909 22706961 23 126 41.0 38.5 39.8 0.6 180 chr2L 22706781 intron CG40006 - chr2L 22706871 intron CG40006 - chr2L 22706961 intron CG40006 - chr2L_23_22705001 chr2L_22705001 RAL-303_100b 1319 chr2L 22776395 22776452 chr2L 22778209 22778261 S-element 41 1813 8.0 12.5 10.2 3.7 1866 chr2L 22776395 intergenic not near genes chr2L 22777328 intergenic not near genes chr2L 22778261 intergenic not near genes chr2L_41_22775001 chr2L_22775001 RAL-303_100b 1320 chr2L 22983917 22983963 chr2L 22984018 22984064 18 98 36.0 33.0 34.5 0.5 147 chr2L 22983917 intron cta + chr2L 22983990 intron cta + chr2L 22984064 intron cta + chr2L_18_22980001 chr2L_22980001 RAL-303_100b 1321 chr2L 23168866 23168888 chr2L 23168967 23168983 7 100 55.5 65.5 60.5 0.1 117 chr2L 23168866 intron,5` UTR CG12567 -,mir-2490 + chr2L 23168924 intron CG12567 - chr2L 23168983 intron CG12567 - chr2L_7_23165001 chr2L_23165001 RAL-303_100b 1322 chr2L 23181373 23181407 chr2L 23181507 23181536 19 132 45.5 37.0 41.2 0.5 163 chr2L 23181373 intergenic not near genes chr2L 23181454 intergenic not near genes chr2L 23181536 intergenic not near genes chr2L_19_23180001 chr2L_23180001 RAL-303_100b 1323 chr2R 469934 469949 chr2R 473200 473207 F-element 6 3265 10.0 11.5 10.8 0.5 3273 chr2R 469934 intergenic not near genes chr2R 471570 intergenic not near genes chr2R 473207 intergenic not near genes chr2R_6_470001 chr2R_470001 RAL-303_100b 1324 chr2R 469971 469980 chr2R 473214 473246 F-element 7 3253 6.0 13.0 9.5 0.7 3275 chr2R 469971 intergenic not near genes chr2R 471608 intergenic not near genes chr2R 473246 intergenic not near genes chr2R_7_470001 chr2R_470001 RAL-303_100b 1325 chr2R 529315 529355 chr2R 537953 537990 Max-element 22 8647 11.0 22.0 16.5 1.3 8675 chr2R 529315 intron CG40378 + chr2R 533652 intron CG40378 + chr2R 537990 intron CG40378 + chr2R_22_530001 chr2R_530001 RAL-303_100b 1326 chr2R 552728 552754 chr2R 553971 553992 1360 7 1242 36.5 27.5 32.0 0.2 1264 chr2R 552728 intron CG40378 + chr2R 553360 intron CG40378 + chr2R 553992 intron CG40378 + chr2R_7_550001 chr2R_550001 RAL-303_100b 1327 chr2R 552755 552788 chr2R 553970 553974 1360 12 1223 24.0 26.5 25.2 0.5 1219 chr2R 552755 intron CG40378 + chr2R 553364 intron CG40378 + chr2R 553974 intron CG40378 + chr2R_12_550001 chr2R_550001 RAL-303_100b 1328 chr2R 652496 652517 chr2R 652875 652882 9 376 25.0 26.0 25.5 0.3 386 chr2R 652496 intergenic not near genes chr2R 652689 intergenic not near genes chr2R 652882 intergenic not near genes chr2R_9_650001 chr2R_650001 RAL-303_100b 1329 chr2R 698920 698955 chr2R 699022 699052 5 97 28.5 26.0 27.2 0.2 132 chr2R 698920 intron CG43676 + chr2R 698986 intron CG43676 + chr2R 699052 intron CG43676 + chr2R_5_695001 chr2R_695001 RAL-303_100b 1330 chr2R 698956 698964 chr2R 699018 699061 11 87 27.5 25.5 26.5 0.4 105 chr2R 698956 intron CG43676 + chr2R 699008 intron CG43676 + chr2R 699061 intron CG43676 + chr2R_11_695001 chr2R_695001 RAL-303_100b 1331 chr2R 952412 952449 chr2R 952560 952597 10 144 31.0 32.0 31.5 0.3 185 chr2R 952412 intergenic not near genes chr2R 952504 intergenic not near genes chr2R 952597 intergenic not near genes chr2R_10_950001 chr2R_950001 RAL-303_100b 1332 chr2R 1082368 1082382 chr2R 1087134 1087183 Doc 18 4785 20.0 31.0 25.5 0.7 4815 chr2R 1082368 intron rl + chr2R 1084776 intron rl + chr2R 1087183 intron rl + chr2R_18_1080001 chr2R_1080001 RAL-303_100b 1333 chr2R 1092138 1092155 chr2R 1278581 1278585 gypsy 5 186440 70.5 71.5 71.0 0.1 186447 chr2R 1092138 intron rl + chr2R 1185362 intergenic not near genes chr2R 1278585 intergenic not near genes chr2R_5_1185001 chr2R_1185001 RAL-303_100b 1334 chr2R 1320204 1320204 chr2R 21358403 21358403 9 20038199 59.5 47.0 53.2 0.2 20038199 chr2R 1320204 intergenic not near genes chr2R 11339304 exon zetaTry - chr2R 21358403 intron cv-2 - chr2R_9_11335001 chr2R_11335001 RAL-303_100b 1335 chr2R 1340071 1340086 chr2R 1340166 1340197 10 111 62.5 60.0 61.2 0.2 126 chr2R 1340071 intergenic not near genes chr2R 1340134 intergenic not near genes chr2R 1340197 intergenic not near genes chr2R_10_1340001 chr2R_1340001 RAL-303_100b 1336 chr2R 1340583 1340593 chr2R 1340872 1340882 9 289 78.0 69.0 73.5 0.1 299 chr2R 1340583 intergenic not near genes chr2R 1340732 intergenic not near genes chr2R 1340882 intergenic not near genes chr2R_9_1340001 chr2R_1340001 RAL-303_100b 1337 chr2R 1365847 1365893 chr2R 1365973 1366030 30 134 39.5 41.5 40.5 0.7 183 chr2R 1365847 intron l(2)41Ab + chr2R 1365938 intron l(2)41Ab + chr2R 1366030 intron l(2)41Ab + chr2R_30_1365001 chr2R_1365001 RAL-303_100b 1338 chr2R 1516580 1516603 chr2R 1521333 1521356 1731 47 4752 92.0 67.5 79.8 0.6 4776 chr2R 1516580 exon Maf1 - chr2R 1518968 intron Maf1 - chr2R 1521356 5` UTR Maf1 - chr2R_47_1515001 chr2R_1515001 RAL-303_100b 1339 chr2R 1755929 1755973 chr2R 1756068 1756112 4 139 28.0 27.0 27.5 0.1 183 chr2R 1755929 intron CG41520 + chr2R 1756020 intron CG41520 + chr2R 1756112 intron CG41520 + chr2R_4_1755001 chr2R_1755001 RAL-303_100b 1340 chr2R 1873407 1873423 chr2R 2880018 2880025 17.6 5 1006609 26.0 8.5 17.2 0.3 1006618 chr2R 1873407 intron CG17684 - chr2R 2376716 intergenic not near genes chr2R 2880025 intergenic not near genes chr2R_5_2375001 chr2R_2375001 RAL-303_100b 1341 chr2R 1919577 1919612 chr2R 1920028 1920063 11 454 67.0 55.5 61.2 0.2 486 chr2R 1919577 intron CG17684 - chr2R 1919820 intron CG17684 - chr2R 1920063 intron CG17684 - chr2R_11_1915001 chr2R_1915001 RAL-303_100b 1342 chr2R 2015112 2015165 chr2R 2015214 2015267 26 101 37.5 35.0 36.2 0.7 155 chr2R 2015112 intron CG17684 - chr2R 2015190 intron CG17684 - chr2R 2015267 intron CG17684 - chr2R_26_2015001 chr2R_2015001 RAL-303_100b 1343 chr2R 2044671 2044696 chr2R 2045493 2045512 16 820 21.5 21.5 21.5 0.7 841 chr2R 2044671 intron CG17684 - chr2R 2045092 intron CG17684 - chr2R 2045512 intron CG17684 - chr2R_16_2045001 chr2R_2045001 RAL-303_100b 1344 chr2R 2110481 2110502 chr2R 2118064 2118080 17.6 7 7582 37.5 24.0 30.8 0.2 7599 chr2R 2110481 intron CG17684 - chr2R 2114280 intron CG17684 - chr2R 2118080 intron CG17684 - chr2R_7_2110001 chr2R_2110001 RAL-303_100b 1345 chr2R 2498962 2499013 chr2R 2508134 2508185 roo 42 9170 11.0 16.5 13.8 2.8 9223 chr2R 2498962 intron MFS17 - chr2R 2503574 intron MFS17 - chr2R 2508185 intron MFS17 - chr2R_42_2500001 chr2R_2500001 RAL-303_100b 1346 chr2R 2508287 2508331 chr2R 2508450 2508494 17 163 29.0 39.5 34.2 0.5 207 chr2R 2508287 intron MFS17 - chr2R 2508390 intron MFS17 - chr2R 2508494 intron MFS17 - chr2R_17_2505001 chr2R_2505001 RAL-303_100b 1347 chr2R 2526970 2526974 chr2R 2527456 2527460 4 486 43.0 49.0 46.0 0.1 490 chr2R 2526970 intron MFS17 - chr2R 2527215 intron MFS17 - chr2R 2527460 intron MFS17 - chr2R_4_2525001 chr2R_2525001 RAL-303_100b 1348 chr2R 2529270 2529324 chr2R 2529369 2529402 30 101 40.0 37.5 38.8 0.8 132 chr2R 2529270 intron MFS17 - chr2R 2529336 intron MFS17 - chr2R 2529402 intron MFS17 - chr2R_30_2525001 chr2R_2525001 RAL-303_100b 1349 chr2R 1373049 1373066 chr2R 2589322 2589339 Cr1a 10 1216273 63.5 57.5 60.5 0.2 1216290 chr2R 1373049 intron l(2)41Ab + chr2R 1981194 intron CG17684 - chr2R 2589339 intergenic not near genes chr2R_10_1980001 chr2R_1980001 RAL-303_100b 1350 chr2R 2875365 2875376 chr2R 2878899 2878916 HMS-Beagle 5 3539 60.0 49.0 54.5 0.1 3551 chr2R 2875365 intergenic not near genes chr2R 2877140 intergenic not near genes chr2R 2878916 intergenic not near genes chr2R_5_2875001 chr2R_2875001 RAL-303_100b 1351 chr2R 2875377 2875392 chr2R 2878897 2878932 HMS-Beagle 8 3533 56.5 48.5 52.5 0.1 3555 chr2R 2875377 intergenic not near genes chr2R 2877154 intergenic not near genes chr2R 2878932 intergenic not near genes chr2R_8_2875001 chr2R_2875001 RAL-303_100b 1352 chr2R 3089382 3089394 chr2R 3089494 3089518 5 117 34.0 37.5 35.8 0.1 136 chr2R 3089382 intron CG42596 + chr2R 3089450 intron CG42596 + chr2R 3089518 intron CG42596 + chr2R_5_3085001 chr2R_3085001 RAL-303_100b 1353 chr2R 3107726 3107751 chr2R 3108432 3108460 4 706 22.5 34.5 28.5 0.1 734 chr2R 3107726 intron CG42596 + chr2R 3108093 intron CG42596 + chr2R 3108460 intron CG42596 + chr2R_4_3105001 chr2R_3105001 RAL-303_100b 1354 chr2R 3144064 3144110 chr2R 3393365 3393413 Doc 21 249301 60.5 50.5 55.5 0.4 249349 chr2R 3144064 intron CG42596 + chr2R 3268738 intergenic not near genes chr2R 3393413 intergenic not near genes chr2R_21_3265001 chr2R_3265001 RAL-303_100b 1355 chr2R 3291663 3291934 chr2R 3914848 3915117 15 623192 56.5 59.0 57.8 0.3 623454 chr2R 3291663 intergenic not near genes chr2R 3603390 intergenic not near genes chr2R 3915117 intron uex - chr2R_15_3600001 chr2R_3600001 RAL-303_100b 1356 chr2R 3292101 3292103 chr2R 3915262 3915273 F-element 5 623171 50.5 56.5 53.5 0.1 623172 chr2R 3292101 intergenic not near genes chr2R 3603687 intergenic not near genes chr2R 3915273 intron uex - chr2R_5_3600001 chr2R_3600001 RAL-303_100b 1357 chr2R 3293717 3293760 chr2R 3293820 3293853 32 101 21.5 9.0 15.2 2.0 136 chr2R 3293717 intergenic not near genes chr2R 3293785 intergenic not near genes chr2R 3293853 intergenic not near genes chr2R_32_3290001 chr2R_3290001 RAL-303_100b 1358 chr2R 3515256 3515311 chr2R 3515369 3515423 18 113 77.0 74.0 75.5 0.2 167 chr2R 3515256 intergenic not near genes chr2R 3515340 intergenic not near genes chr2R 3515423 intergenic not near genes chr2R_18_3515001 chr2R_3515001 RAL-303_100b 1359 chr2R 3526624 3526637 chr2R 3531379 3531387 F-element 7 4753 13.5 9.5 11.5 0.6 4763 chr2R 3526624 intergenic not near genes chr2R 3529006 intergenic not near genes chr2R 3531387 intergenic not near genes chr2R_7_3525001 chr2R_3525001 RAL-303_100b 1360 chr2R 3532597 3532637 chr2R 3536065 3536105 Doc 14 3468 4.0 7.5 5.8 2.1 3508 chr2R 3532597 intergenic not near genes chr2R 3534351 intergenic not near genes chr2R 3536105 intergenic not near genes chr2R_14_3530001 chr2R_3530001 RAL-303_100b 1361 chr2R 3291831 3292053 chr2R 3914847 3915130 5 623049 53.0 59.0 56.0 0.1 623299 chr2R 3291831 intergenic not near genes chr2R 3603480 intergenic not near genes chr2R 3915130 intron uex - chr2R_5_3600001 chr2R_3600001 RAL-303_100b 1362 chr2R 4247809 4247836 chr2R 4247911 4247911 11 97 43.0 42.0 42.5 0.3 102 chr2R 4247809 intergenic not near genes chr2R 4247860 intergenic not near genes chr2R 4247911 intergenic not near genes chr2R_11_4245001 chr2R_4245001 RAL-303_100b 1363 chr2R 4265280 4265306 chr2R 4265388 4265390 5 101 61.0 51.5 56.2 0.1 110 chr2R 4265280 intergenic not near genes chr2R 4265335 intergenic not near genes chr2R 4265390 intergenic not near genes chr2R_5_4265001 chr2R_4265001 RAL-303_100b 1364 chr2R 4312930 4312982 chr2R 4313039 4313091 38 107 58.5 52.5 55.5 0.7 161 chr2R 4312930 intergenic not near genes chr2R 4313010 intergenic not near genes chr2R 4313091 intergenic not near genes chr2R_38_4310001 chr2R_4310001 RAL-303_100b 1365 chr2R 4580184 4580222 chr2R 4580821 4580874 18 649 47.5 36.5 42.0 0.4 690 chr2R 4580184 intergenic not near genes chr2R 4580529 intergenic not near genes chr2R 4580874 intergenic not near genes chr2R_18_4580001 chr2R_4580001 RAL-303_100b 1366 chr2R 4603319 4603335 chr2R 4603427 4603443 11 108 44.0 31.0 37.5 0.3 124 chr2R 4603319 intron p120ctn + chr2R 4603381 intron p120ctn + chr2R 4603443 intron p120ctn + chr2R_11_4600001 chr2R_4600001 RAL-303_100b 1367 chr2R 4603336 4603374 chr2R 4603422 4603443 21 98 24.0 27.5 25.8 0.8 107 chr2R 4603336 intron p120ctn + chr2R 4603390 intron p120ctn + chr2R 4603443 intron p120ctn + chr2R_21_4600001 chr2R_4600001 RAL-303_100b 1368 chr2R 4604526 4604549 chr2R 4604630 4604633 10 100 44.5 27.5 36.0 0.3 107 chr2R 4604526 intron p120ctn + chr2R 4604580 intron p120ctn + chr2R 4604633 intron p120ctn + chr2R_10_4600001 chr2R_4600001 RAL-303_100b 1369 chr2R 4604550 4604582 chr2R 4604629 4604687 20 95 34.5 28.0 31.2 0.6 137 chr2R 4604550 intron p120ctn + chr2R 4604618 intron p120ctn + chr2R 4604687 intron p120ctn + chr2R_20_4600001 chr2R_4600001 RAL-303_100b 1370 chr2R 4621295 4621346 chr2R 4621860 4621911 33 563 53.0 37.0 45.0 0.7 616 chr2R 4621295 3` UTR CR44101 - chr2R 4621603 3` UTR CR44101 - chr2R 4621911 3` UTR CR44101 - chr2R_33_4620001 chr2R_4620001 RAL-303_100b 1371 chr2R 4622930 4622946 chr2R 4624114 4624130 1360 11 1184 32.5 13.5 23.0 0.5 1200 chr2R 4622930 intergenic CR44101 - chr2R 4623530 intergenic not near genes chr2R 4624130 intergenic not near genes chr2R_11_4620001 chr2R_4620001 RAL-303_100b 1372 chr2R 4622950 4622985 chr2R 4624109 4624169 1360 46 1176 12.5 12.0 12.2 3.5 1219 chr2R 4622950 intergenic CR44101 - chr2R 4623560 intergenic not near genes chr2R 4624169 intergenic not near genes chr2R_46_4620001 chr2R_4620001 RAL-303_100b 1373 chr2R 4624619 4624642 chr2R 4626549 4626572 Bica 23 1930 38.5 29.0 33.8 0.7 1953 chr2R 4624619 intergenic not near genes chr2R 4625596 intergenic not near genes chr2R 4626572 intergenic not near genes chr2R_23_4625001 chr2R_4625001 RAL-303_100b 1374 chr2R 4624643 4624646 chr2R 4626548 4626576 Bica 6 1926 36.0 28.0 32.0 0.2 1933 chr2R 4624643 intergenic not near genes chr2R 4625610 intergenic not near genes chr2R 4626576 intergenic not near genes chr2R_6_4625001 chr2R_4625001 RAL-303_100b 1375 chr2R 4624647 4624672 chr2R 4626544 4626602 Bica 22 1927 18.0 23.5 20.8 1.0 1955 chr2R 4624647 intergenic not near genes chr2R 4625624 intergenic not near genes chr2R 4626602 intergenic not near genes chr2R_22_4625001 chr2R_4625001 RAL-303_100b 1376 chr2R 4634153 4634186 chr2R 4634257 4634290 18 104 43.0 56.5 49.8 0.4 137 chr2R 4634153 intergenic not near genes chr2R 4634222 intergenic not near genes chr2R 4634290 intergenic not near genes chr2R_18_4630001 chr2R_4630001 RAL-303_100b 1377 chr2R 4656755 4656758 chr2R 4656990 4656993 5 235 144.0 127.5 135.8 0.0 238 chr2R 4656755 intergenic not near genes chr2R 4656874 intergenic not near genes chr2R 4656993 intergenic not near genes chr2R_5_4655001 chr2R_4655001 RAL-303_100b 1378 chr2R 4656762 4656811 chr2R 4656986 4657038 28 227 137.0 129.0 133.0 0.2 276 chr2R 4656762 intergenic not near genes chr2R 4656900 intergenic not near genes chr2R 4657038 intergenic not near genes chr2R_28_4655001 chr2R_4655001 RAL-303_100b 1379 chr2R 4702454 4702506 chr2R 4702617 4702669 18 162 44.0 36.0 40.0 0.4 215 chr2R 4702454 intron Nipped-B - chr2R 4702562 intron Nipped-B - chr2R 4702669 intron Nipped-B - chr2R_18_4700001 chr2R_4700001 RAL-303_100b 1380 chr2R 4783227 4783270 chr2R 4783384 4783429 32 154 51.5 55.5 53.5 0.6 202 chr2R 4783227 intergenic not near genes chr2R 4783328 intergenic not near genes chr2R 4783429 intergenic not near genes chr2R_32_4780001 chr2R_4780001 RAL-303_100b 1381 chr2R 4838846 4838900 chr2R 4840394 4840448 transib2 18 1546 42.5 36.0 39.2 0.4 1602 chr2R 4838846 intergenic not near genes chr2R 4839647 intergenic not near genes chr2R 4840448 intergenic not near genes chr2R_18_4835001 chr2R_4835001 RAL-303_100b 1382 chr2R 4870721 4870739 chr2R 4871257 4871275 R1A1-element 7 534 54.5 52.0 53.2 0.1 554 chr2R 4870721 intergenic not near genes chr2R 4870998 intergenic not near genes chr2R 4871275 intergenic not near genes chr2R_7_4870001 chr2R_4870001 RAL-303_100b 1383 chr2R 4942028 4942075 chr2R 4942178 4942225 15 144 25.0 16.5 20.8 0.7 197 chr2R 4942028 intron Ir41a + chr2R 4942126 intron Ir41a + chr2R 4942225 intron Ir41a + chr2R_15_4940001 chr2R_4940001 RAL-303_100b 1384 chr2R 5075198 5075221 chr2R 5075350 5075364 13 152 51.0 26.0 38.5 0.3 166 chr2R 5075198 intergenic not near genes chr2R 5075281 intergenic not near genes chr2R 5075364 intergenic not near genes chr2R_13_5075001 chr2R_5075001 RAL-303_100b 1385 chr2R 5075251 5075373 chr2R 5075767 5075798 19 459 26.0 44.5 35.2 0.5 547 chr2R 5075251 intergenic not near genes chr2R 5075524 intergenic not near genes chr2R 5075798 intergenic not near genes chr2R_19_5075001 chr2R_5075001 RAL-303_100b 1386 chr2R 5079931 5079992 chr2R 5080595 5080622 diver2 12 647 30.0 55.5 42.8 0.3 691 chr2R 5079931 intergenic not near genes chr2R 5080276 intergenic not near genes chr2R 5080622 intergenic not near genes chr2R_12_5080001 chr2R_5080001 RAL-303_100b 1387 chr2R 5080766 5080817 chr2R 5080877 5080933 29 110 6.5 13.0 9.8 2.7 167 chr2R 5080766 intergenic not near genes chr2R 5080850 intergenic not near genes chr2R 5080933 intergenic not near genes chr2R_29_5080001 chr2R_5080001 RAL-303_100b 1388 chr2R 5089600 5089647 chr2R 5089721 5089768 25 119 33.5 28.5 31.0 0.8 168 chr2R 5089600 intergenic not near genes chr2R 5089684 intergenic not near genes chr2R 5089768 intergenic not near genes chr2R_25_5085001 chr2R_5085001 RAL-303_100b 1389 chr2R 5125228 5125243 chr2R 5125571 5125577 9 342 33.5 25.5 29.5 0.3 349 chr2R 5125228 intron gus - chr2R 5125402 intron gus - chr2R 5125577 intron gus - chr2R_9_5125001 chr2R_5125001 RAL-303_100b 1390 chr2R 5125254 5125276 chr2R 5125565 5125619 15 336 28.0 23.5 25.8 0.6 365 chr2R 5125254 intron gus - chr2R 5125436 intron gus - chr2R 5125619 intron gus - chr2R_15_5125001 chr2R_5125001 RAL-303_100b 1391 chr2R 5237326 5237370 chr2R 5237433 5237472 29 104 47.5 37.0 42.2 0.7 146 chr2R 5237326 intron Nipped-A - chr2R 5237399 intron Nipped-A - chr2R 5237472 intron Nipped-A - chr2R_29_5235001 chr2R_5235001 RAL-303_100b 1392 chr2R 5240186 5240245 chr2R 5240281 5240286 36 93 26.5 27.0 26.8 1.3 100 chr2R 5240186 intron Nipped-A - chr2R 5240236 intron Nipped-A - chr2R 5240286 intron Nipped-A - chr2R_36_5240001 chr2R_5240001 RAL-303_100b 1393 chr2R 5342802 5342859 chr2R 5342924 5342981 28 121 36.5 35.5 36.0 0.8 179 chr2R 5342802 intergenic not near genes chr2R 5342892 intergenic not near genes chr2R 5342981 intergenic not near genes chr2R_28_5340001 chr2R_5340001 RAL-303_100b 1394 chr2R 5363464 5363519 chr2R 5363567 5363622 24 101 45.0 46.0 45.5 0.5 158 chr2R 5363464 5` UTR CR42646 + chr2R 5363543 intron CR42646 + chr2R 5363622 intron CR42646 + chr2R_24_5360001 chr2R_5360001 RAL-303_100b 1395 chr2R 5417972 5417976 chr2R 5420629 5420633 Burdock 5 2657 49.0 19.5 34.2 0.1 2661 chr2R 5417972 intron laccase2 + chr2R 5419302 intron laccase2 + chr2R 5420633 intron laccase2 + chr2R_5_5415001 chr2R_5415001 RAL-303_100b 1396 chr2R 5417977 5418000 chr2R 5420627 5420657 Burdock 27 2655 31.5 18.0 24.8 1.0 2680 chr2R 5417977 intron laccase2 + chr2R 5419317 intron laccase2 + chr2R 5420657 intron laccase2 + chr2R_27_5415001 chr2R_5415001 RAL-303_100b 1397 chr2R 5418003 5418027 chr2R 5420625 5420684 Burdock 29 2654 17.5 17.0 17.2 1.6 2681 chr2R 5418003 intron laccase2 + chr2R 5419344 intron laccase2 + chr2R 5420684 intron laccase2 + chr2R_29_5415001 chr2R_5415001 RAL-303_100b 1398 chr2R 5450078 5450113 chr2R 5451006 5451036 baggins 15 926 43.5 53.0 48.2 0.3 958 chr2R 5450078 intron laccase2 + chr2R 5450557 intron laccase2 + chr2R 5451036 intron laccase2 + chr2R_15_5450001 chr2R_5450001 RAL-303_100b 1399 chr2R 5455751 5455806 chr2R 5455853 5455909 16 101 40.5 39.0 39.8 0.4 158 chr2R 5455751 3` UTR laccase2 + chr2R 5455830 3` UTR laccase2 + chr2R 5455909 3` UTR laccase2 + chr2R_16_5455001 chr2R_5455001 RAL-303_100b 1400 chr2R 5468611 5468621 chr2R 5468782 5468787 4 170 59.5 25.0 42.2 0.1 176 chr2R 5468611 intron CG30440 - chr2R 5468699 intron CG30440 - chr2R 5468787 intron CG30440 - chr2R_4_5465001 chr2R_5465001 RAL-303_100b 1401 chr2R 5463244 5463304 chr2R 5468675 5468726 22 5429 90.0 50.5 70.2 0.3 5482 chr2R 5463244 intergenic not near genes chr2R 5465985 intergenic not near genes chr2R 5468726 intron CG30440 - chr2R_22_5465001 chr2R_5465001 RAL-303_100b 1402 chr2R 5472341 5472365 chr2R 5472461 5472485 18 116 36.0 17.5 26.8 0.6 144 chr2R 5472341 intron CG30440 - chr2R 5472413 intron CG30440 - chr2R 5472485 intron CG30440 - chr2R_18_5470001 chr2R_5470001 RAL-303_100b 1403 chr2R 5472366 5472393 chr2R 5472460 5472498 35 114 18.0 16.5 17.2 1.9 132 chr2R 5472366 intron CG30440 - chr2R 5472432 intron CG30440 - chr2R 5472498 intron CG30440 - chr2R_35_5470001 chr2R_5470001 RAL-303_100b 1404 chr2R 5475572 5475624 chr2R 5475691 5475738 17 118 24.0 24.5 24.2 0.7 166 chr2R 5475572 intron CG30440 - chr2R 5475655 intron CG30440 - chr2R 5475738 intron CG30440 - chr2R_17_5475001 chr2R_5475001 RAL-303_100b 1405 chr2R 5491694 5491745 chr2R 5491860 5491911 27 166 49.5 45.5 47.5 0.6 217 chr2R 5491694 intron CG30440 - chr2R 5491802 intron CG30440 - chr2R 5491911 intron CG30440 - chr2R_27_5490001 chr2R_5490001 RAL-303_100b 1406 chr2R 5503529 5503578 chr2R 5503634 5503683 19 105 32.5 26.0 29.2 0.6 154 chr2R 5503529 intron,3` UTR CG30438 +,TpnC4 - chr2R 5503606 intron,3` UTR CG30438 +,TpnC4 - chr2R 5503683 intron,intron CG30438 +,TpnC4 - chr2R_19_5500001 chr2R_5500001 RAL-303_100b 1407 chr2R 5509504 5509513 chr2R 5509625 5509634 8 121 26.0 15.0 20.5 0.4 130 chr2R 5509504 intron CG30438 + chr2R 5509569 intron CG30438 + chr2R 5509634 intron CG30438 + chr2R_8_5505001 chr2R_5505001 RAL-303_100b 1408 chr2R 5509514 5509517 chr2R 5509614 5509638 5 117 23.5 11.5 17.5 0.3 124 chr2R 5509514 intron CG30438 + chr2R 5509576 intron CG30438 + chr2R 5509638 intron CG30438 + chr2R_5_5505001 chr2R_5505001 RAL-303_100b 1409 chr2R 5509520 5509522 chr2R 5509639 5509643 6 120 21.5 23.0 22.2 0.3 123 chr2R 5509520 intron CG30438 + chr2R 5509582 intron CG30438 + chr2R 5509643 intron CG30438 + chr2R_6_5505001 chr2R_5505001 RAL-303_100b 1410 chr2R 5509523 5509547 chr2R 5509637 5509666 25 120 10.0 23.0 16.5 1.4 143 chr2R 5509523 intron CG30438 + chr2R 5509594 intron CG30438 + chr2R 5509666 intron CG30438 + chr2R_25_5505001 chr2R_5505001 RAL-303_100b 1411 chr2R 5543205 5543221 chr2R 5547284 5547330 invader1 15 4104 1.0 24.0 12.5 1.1 4125 chr2R 5543205 intron CG30438 + chr2R 5545268 intron CG30438 + chr2R 5547330 intron CG30438 + chr2R_15_5545001 chr2R_5545001 RAL-303_100b 1412 chr2R 5581397 5581420 chr2R 5627631 5627654 22 46233 44.0 43.5 43.8 0.5 46257 chr2R 5581397 intergenic not near genes chr2R 5604526 intron Fis1 - chr2R 5627654 intergenic not near genes chr2R_22_5600001 chr2R_5600001 RAL-303_100b 1413 chr2R 5606514 5606765 chr2R 5736490 5736774 4 130004 48.5 32.0 40.2 0.1 130260 chr2R 5606514 intergenic not near genes chr2R 5671644 intergenic kune + chr2R 5736774 intergenic not near genes chr2R_4_5670001 chr2R_5670001 RAL-303_100b 1414 chr2R 5621353 5621403 chr2R 5621452 5621492 18 100 41.0 43.0 42.0 0.4 139 chr2R 5621353 intergenic not near genes chr2R 5621422 intergenic not near genes chr2R 5621492 intergenic not near genes chr2R_18_5620001 chr2R_5620001 RAL-303_100b 1415 chr2R 5660060 5660113 chr2R 5660163 5660220 22 107 34.5 32.5 33.5 0.6 160 chr2R 5660060 intron Not3 - chr2R 5660140 intron Not3 - chr2R 5660220 intron Not3 - chr2R_22_5660001 chr2R_5660001 RAL-303_100b 1416 chr2R 5714423 5714455 chr2R 5714621 5714651 11 198 44.0 25.5 34.8 0.3 228 chr2R 5714423 intron ap - chr2R 5714537 intron ap - chr2R 5714651 intron ap - chr2R_11_5710001 chr2R_5710001 RAL-303_100b 1417 chr2R 5606790 5606829 chr2R 5736773 5736805 6 129974 57.0 69.0 63.0 0.1 130015 chr2R 5606790 intergenic not near genes chr2R 5671798 5` UTR kune + chr2R 5736805 intergenic not near genes chr2R_6_5670001 chr2R_5670001 RAL-303_100b 1418 chr2R 5742808 5742865 chr2R 5742912 5742965 24 99 52.0 47.5 49.8 0.5 157 chr2R 5742808 intergenic not near genes chr2R 5742886 intergenic not near genes chr2R 5742965 intergenic not near genes chr2R_24_5740001 chr2R_5740001 RAL-303_100b 1419 chr2R 5750424 5750453 chr2R 5750541 5750570 24 116 34.5 24.5 29.5 0.8 146 chr2R 5750424 intergenic not near genes chr2R 5750497 intergenic not near genes chr2R 5750570 intergenic not near genes chr2R_24_5750001 chr2R_5750001 RAL-303_100b 1420 chr2R 5772503 5772550 chr2R 5772622 5772653 48 114 16.0 16.5 16.2 2.8 150 chr2R 5772503 3` UTR Gp210 + chr2R 5772578 3` UTR Gp210 + chr2R 5772653 3` UTR Gp210 + chr2R_48_5770001 chr2R_5770001 RAL-303_100b 1421 chr2R 5772813 5772854 chr2R 5772920 5772961 17 107 39.5 35.5 37.5 0.4 148 chr2R 5772813 3` UTR Gp210 + chr2R 5772887 3` UTR Gp210 + chr2R 5772961 3` UTR Gp210 + chr2R_17_5770001 chr2R_5770001 RAL-303_100b 1422 chr2R 5790440 5790495 chr2R 5790548 5790605 41 109 16.5 12.0 14.2 2.7 165 chr2R 5790440 intergenic not near genes chr2R 5790522 intergenic not near genes chr2R 5790605 intergenic not near genes chr2R_41_5790001 chr2R_5790001 RAL-303_100b 1423 chr2R 5794204 5794263 chr2R 5794357 5794391 27 150 47.0 47.0 47.0 0.6 187 chr2R 5794204 intergenic not near genes chr2R 5794298 intergenic not near genes chr2R 5794391 intergenic not near genes chr2R_27_5790001 chr2R_5790001 RAL-303_100b 1424 chr2R 5859966 5860012 chr2R 5860092 5860119 26 131 58.5 50.0 54.2 0.5 153 chr2R 5859966 3` UTR dpr12 + chr2R 5860042 3` UTR dpr12 + chr2R 5860119 3` UTR dpr12 + chr2R_26_5860001 chr2R_5860001 RAL-303_100b 1425 chr2R 5861269 5861320 chr2R 5861408 5861466 47 139 12.5 11.0 11.8 3.7 197 chr2R 5861269 intergenic dpr12 + chr2R 5861368 intergenic not near genes chr2R 5861466 intergenic not near genes chr2R_47_5860001 chr2R_5860001 RAL-303_100b 1426 chr2R 5869251 5869301 chr2R 5874352 5874402 flea 51 5100 20.0 17.0 18.5 2.6 5151 chr2R 5869251 intergenic not near genes chr2R 5871826 intergenic not near genes chr2R 5874402 intergenic not near genes chr2R_51_5870001 chr2R_5870001 RAL-303_100b 1427 chr2R 5876845 5876901 chr2R 5876972 5877028 29 124 49.0 44.5 46.8 0.6 183 chr2R 5876845 intergenic not near genes chr2R 5876936 intergenic not near genes chr2R 5877028 intergenic not near genes chr2R_29_5875001 chr2R_5875001 RAL-303_100b 1428 chr2R 5878899 5878958 chr2R 5879004 5879062 39 104 12.5 14.5 13.5 2.7 163 chr2R 5878899 intergenic CG44438 - chr2R 5878980 intergenic CG44438 - chr2R 5879062 intergenic CG44438 - chr2R_39_5875001 chr2R_5875001 RAL-303_100b 1429 chr2R 5885341 5885378 chr2R 5885495 5885532 31 153 18.0 12.0 15.0 1.9 191 chr2R 5885341 5` UTR CR44125 + chr2R 5885436 5` UTR CR44125 + chr2R 5885532 5` UTR CR44125 + chr2R_31_5885001 chr2R_5885001 RAL-303_100b 1430 chr2R 5902132 5902191 chr2R 5909716 5909775 17.6 30 7583 6.0 9.5 7.8 3.4 7643 chr2R 5902132 intron CG43366 + chr2R 5905954 intron CG43366 + chr2R 5909775 intron CG43366 + chr2R_30_5905001 chr2R_5905001 RAL-303_100b 1431 chr2R 5917745 5917804 chr2R 5917849 5917908 37 102 42.0 48.5 45.2 0.8 163 chr2R 5917745 intron CG43366 + chr2R 5917826 intron CG43366 + chr2R 5917908 intron CG43366 + chr2R_37_5915001 chr2R_5915001 RAL-303_100b 1432 chr2R 5932770 5932825 chr2R 5932874 5932895 29 101 55.5 53.5 54.5 0.5 125 chr2R 5932770 intergenic not near genes chr2R 5932832 intergenic not near genes chr2R 5932895 intergenic not near genes chr2R_29_5930001 chr2R_5930001 RAL-303_100b 1433 chr2R 5947044 5947083 chr2R 5947190 5947229 19 145 40.5 35.5 38.0 0.5 185 chr2R 5947044 intergenic not near genes chr2R 5947136 intergenic not near genes chr2R 5947229 intergenic not near genes chr2R_19_5945001 chr2R_5945001 RAL-303_100b 1434 chr2R 6016645 6016699 chr2R 6016977 6017031 32 329 35.0 41.0 38.0 0.8 386 chr2R 6016645 intergenic not near genes chr2R 6016838 intergenic not near genes chr2R 6017031 intergenic not near genes chr2R_32_6015001 chr2R_6015001 RAL-303_100b 1435 chr2R 6088344 6088380 chr2R 6088462 6088498 16 118 52.5 48.0 50.2 0.3 154 chr2R 6088344 intergenic not near genes chr2R 6088421 intergenic not near genes chr2R 6088498 intergenic not near genes chr2R_16_6085001 chr2R_6085001 RAL-303_100b 1436 chr2R 6096695 6096706 chr2R 6101918 6101928 BS 10 5222 42.5 22.0 32.2 0.3 5233 chr2R 6096695 intron EcR - chr2R 6099312 intron EcR - chr2R 6101928 intron EcR - chr2R_10_6095001 chr2R_6095001 RAL-303_100b 1437 chr2R 6096707 6096729 chr2R 6101917 6101951 BS 20 5219 29.5 21.5 25.5 0.8 5244 chr2R 6096707 intron EcR - chr2R 6099329 intron EcR - chr2R 6101951 intron EcR - chr2R_20_6095001 chr2R_6095001 RAL-303_100b 1438 chr2R 6096730 6096751 chr2R 6101916 6101934 BS 14 5208 16.0 21.5 18.8 0.7 5204 chr2R 6096730 intron EcR - chr2R 6099332 intron EcR - chr2R 6101934 intron EcR - chr2R_14_6095001 chr2R_6095001 RAL-303_100b 1439 chr2R 6121380 6121427 chr2R 6121557 6121604 26 175 49.5 34.5 42.0 0.6 224 chr2R 6121380 intron EcR - chr2R 6121492 intron EcR - chr2R 6121604 intron EcR - chr2R_26_6120001 chr2R_6120001 RAL-303_100b 1440 chr2R 6126916 6126964 chr2R 6127049 6127097 24 132 46.5 41.5 44.0 0.5 181 chr2R 6126916 intron EcR - chr2R 6127006 intron EcR - chr2R 6127097 intron EcR - chr2R_24_6125001 chr2R_6125001 RAL-303_100b 1441 chr2R 6178100 6178145 chr2R 6178249 6178296 44 150 10.5 13.5 12.0 3.4 196 chr2R 6178100 intergenic not near genes chr2R 6178198 intergenic not near genes chr2R 6178296 intergenic not near genes chr2R_44_6175001 chr2R_6175001 RAL-303_100b 1442 chr2R 6178659 6178713 chr2R 6178765 6178810 34 111 40.0 35.5 37.8 0.9 151 chr2R 6178659 intergenic not near genes chr2R 6178734 intergenic not near genes chr2R 6178810 intergenic not near genes chr2R_34_6175001 chr2R_6175001 RAL-303_100b 1443 chr2R 6194661 6194666 chr2R 6194769 6194774 9 108 46.0 24.0 35.0 0.2 113 chr2R 6194661 intron Ptr - chr2R 6194718 intron Ptr - chr2R 6194774 intron Ptr - chr2R_9_6190001 chr2R_6190001 RAL-303_100b 1444 chr2R 6194667 6194696 chr2R 6194768 6194804 27 106 26.0 23.5 24.8 1.0 137 chr2R 6194667 intron Ptr - chr2R 6194736 intron Ptr - chr2R 6194804 intron Ptr - chr2R_27_6190001 chr2R_6190001 RAL-303_100b 1445 chr2R 3998867 3998868 chr2R 6486817 6486860 14 2487954 119.0 51.0 85.0 0.2 2487993 chr2R 3998867 intergenic not near genes chr2R 5242864 intron Nipped-A - chr2R 6486860 intergenic not near genes chr2R_14_5240001 chr2R_5240001 RAL-303_100b 1446 chr2R 6494506 6494519 chr2R 6499293 6499306 F-element 16 4787 34.0 6.5 20.2 0.8 4800 chr2R 6494506 intergenic not near genes chr2R 6496906 intergenic not near genes chr2R 6499306 intergenic not near genes chr2R_16_6495001 chr2R_6495001 RAL-303_100b 1447 chr2R 6494523 6494552 chr2R 6499290 6499339 F-element 24 4784 16.0 6.0 11.0 2.0 4816 chr2R 6494523 intergenic not near genes chr2R 6496931 intergenic not near genes chr2R 6499339 intergenic not near genes chr2R_24_6495001 chr2R_6495001 RAL-303_100b 1448 chr2R 6530743 6530798 chr2R 6530848 6530903 29 104 30.0 28.5 29.2 1.0 160 chr2R 6530743 intron jing + chr2R 6530823 intron jing + chr2R 6530903 intron jing + chr2R_29_6530001 chr2R_6530001 RAL-303_100b 1449 chr2R 6546692 6546750 chr2R 6546818 6546871 33 124 46.0 52.5 49.2 0.7 179 chr2R 6546692 intron jing + chr2R 6546782 intron jing + chr2R 6546871 intron jing + chr2R_33_6545001 chr2R_6545001 RAL-303_100b 1450 chr2R 6562520 6562579 chr2R 6562634 6562672 27 103 42.5 45.5 44.0 0.6 152 chr2R 6562520 intron jing + chr2R 6562596 intron jing + chr2R 6562672 intron jing + chr2R_27_6560001 chr2R_6560001 RAL-303_100b 1451 chr2R 6579759 6579804 chr2R 6584863 6584905 flea 39 5110 17.5 15.5 16.5 2.2 5146 chr2R 6579759 intron jing + chr2R 6582332 intron jing + chr2R 6584905 intron jing + chr2R_39_6580001 chr2R_6580001 RAL-303_100b 1452 chr2R 6611700 6611753 chr2R 6611865 6611918 29 163 42.5 36.0 39.2 0.7 218 chr2R 6611700 intron jing + chr2R 6611809 intron jing + chr2R 6611918 intron jing + chr2R_29_6610001 chr2R_6610001 RAL-303_100b 1453 chr2R 6633178 6633230 chr2R 6633280 6633332 27 100 51.0 46.0 48.5 0.5 154 chr2R 6633178 intergenic Vha16-1 -,Trap1 - chr2R 6633255 intergenic Vha16-1 -,Trap1 - chr2R 6633332 intergenic Vha16-1 -,Trap1 - chr2R_27_6630001 chr2R_6630001 RAL-303_100b 1454 chr2R 6699567 6699621 chr2R 6699677 6699731 22 109 32.5 35.0 33.8 0.6 164 chr2R 6699567 intergenic Rab2 + chr2R 6699649 intergenic Rab2 + chr2R 6699731 intergenic Rab2 +,CG3409 -,CG45092 - chr2R_22_6695001 chr2R_6695001 RAL-303_100b 1455 chr2R 6712566 6712601 chr2R 6712682 6712723 14 119 37.5 44.5 41.0 0.3 157 chr2R 6712566 intron,intron CG3409 -,CG45092 - chr2R 6712644 intron,intron CG3409 -,CG45092 - chr2R 6712723 intron,intron CG3409 -,CG45092 - chr2R_14_6710001 chr2R_6710001 RAL-303_100b 1456 chr2R 6713916 6713919 chr2R 6714038 6714041 4 122 19.5 40.0 29.8 0.1 125 chr2R 6713916 intron,intron CG3409 -,CG45092 - chr2R 6713978 intron,intron CG3409 -,CG45092 - chr2R 6714041 intron,intron CG3409 -,CG45092 - chr2R_4_6710001 chr2R_6710001 RAL-303_100b 1457 chr2R 6713928 6713932 chr2R 6714033 6714054 6 118 21.0 40.5 30.8 0.2 126 chr2R 6713928 intron,intron CG3409 -,CG45092 - chr2R 6713991 intron,intron CG3409 -,CG45092 - chr2R 6714054 intron,intron CG3409 -,CG45092 - chr2R_6_6710001 chr2R_6710001 RAL-303_100b 1458 chr2R 6758977 6759029 chr2R 6759081 6759122 34 101 41.5 42.5 42.0 0.8 145 chr2R 6758977 intergenic CG9436 - chr2R 6759050 intergenic CG9436 - chr2R 6759122 intergenic CG9436 - chr2R_34_6755001 chr2R_6755001 RAL-303_100b 1459 chr2R 6760451 6760453 chr2R 6760981 6760983 4 530 61.5 49.0 55.2 0.1 532 chr2R 6760451 3` UTR Epac - chr2R 6760717 3` UTR Epac - chr2R 6760983 3` UTR Epac - chr2R_4_6760001 chr2R_6760001 RAL-303_100b 1460 chr2R 6760460 6760505 chr2R 6760978 6761035 27 527 42.5 47.0 44.8 0.6 575 chr2R 6760460 3` UTR Epac - chr2R 6760748 3` UTR Epac - chr2R 6761035 3` UTR Epac - chr2R_27_6760001 chr2R_6760001 RAL-303_100b 1461 chr2R 6798526 6798537 chr2R 6798637 6798648 4 108 60.0 49.0 54.5 0.1 122 chr2R 6798526 intron Epac - chr2R 6798587 intron Epac - chr2R 6798648 intron Epac - chr2R_4_6795001 chr2R_6795001 RAL-303_100b 1462 chr2R 6798540 6798582 chr2R 6798636 6798693 29 108 46.5 49.0 47.8 0.6 153 chr2R 6798540 intron Epac - chr2R 6798616 intron Epac - chr2R 6798693 intron Epac - chr2R_29_6795001 chr2R_6795001 RAL-303_100b 1463 chr2R 6842632 6842669 chr2R 6842911 6842948 18 278 50.5 42.0 46.2 0.4 316 chr2R 6842632 intergenic not near genes chr2R 6842790 intergenic not near genes chr2R 6842948 intergenic not near genes chr2R_18_6840001 chr2R_6840001 RAL-303_100b 1464 chr2R 6876200 6876252 chr2R 6876307 6876329 29 104 50.5 56.5 53.5 0.5 129 chr2R 6876200 intron,intron CR44169 +,Spn42Da - chr2R 6876264 intron,intron CR44169 +,Spn42Da - chr2R 6876329 5` UTR,intron CR44169 +,Spn42Da - chr2R_29_6875001 chr2R_6875001 RAL-303_100b 1465 chr2R 6878833 6878884 chr2R 6878938 6878989 33 109 109.0 105.0 107.0 0.3 156 chr2R 6878833 intron,intron CR44169 +,Spn42Da - chr2R 6878911 intron,5` UTR CR44169 +,Spn42Da - chr2R 6878989 intron CR44169 + chr2R_33_6875001 chr2R_6875001 RAL-303_100b 1466 chr2R 6881468 6881519 chr2R 6881585 6881636 22 116 35.0 35.0 35.0 0.6 168 chr2R 6881468 intron Spn42Dc + chr2R 6881552 intron Spn42Dc + chr2R 6881636 intron Spn42Dc + chr2R_22_6880001 chr2R_6880001 RAL-303_100b 1467 chr2R 6890631 6890683 chr2R 6890748 6890802 24 116 48.0 49.0 48.5 0.5 171 chr2R 6890631 intergenic not near genes chr2R 6890716 intergenic not near genes chr2R 6890802 intergenic not near genes chr2R_24_6890001 chr2R_6890001 RAL-303_100b 1468 chr2R 6936209 6936269 chr2R 6936316 6936366 70 104 13.5 22.5 18.0 3.7 157 chr2R 6936209 intron mim - chr2R 6936288 intron mim - chr2R 6936366 intron mim - chr2R_70_6935001 chr2R_6935001 RAL-303_100b 1469 chr2R 6952155 6952183 chr2R 6959750 6959798 opus 22 7609 14.5 4.5 9.5 2.1 7643 chr2R 6952155 intron,intron,exon mim -,CheB42c -,ppk25 + chr2R 6955976 intron,intron mim -,CheB42c - chr2R 6959798 intron,intron mim -,CheB42c - chr2R_22_6955001 chr2R_6955001 RAL-303_100b 1470 chr2R 6962423 6962480 chr2R 6962805 6962862 31 381 54.5 59.5 57.0 0.5 439 chr2R 6962423 intron,intron mim -,CheB42c - chr2R 6962642 intron,intron mim -,CheB42c - chr2R 6962862 intron,intron mim -,CheB42c - chr2R_31_6960001 chr2R_6960001 RAL-303_100b 1471 chr2R 6964263 6964317 chr2R 6964365 6964419 16 101 42.5 50.0 46.2 0.3 156 chr2R 6964263 intron,intron mim -,CheB42c - chr2R 6964341 intron,intron mim -,CheB42c - chr2R 6964419 intron,intron mim -,CheB42c - chr2R_16_6960001 chr2R_6960001 RAL-303_100b 1472 chr2R 7029824 7029875 chr2R 7030157 7030208 38 330 53.5 46.0 49.8 0.7 384 chr2R 7029824 intron Tsp42Eg + chr2R 7030016 intron Tsp42Eg + chr2R 7030208 intron Tsp42Eg + chr2R_38_7030001 chr2R_7030001 RAL-303_100b 1473 chr2R 7091194 7091236 chr2R 7091301 7091343 15 105 28.0 33.0 30.5 0.5 149 chr2R 7091194 intron esn + chr2R 7091268 intron esn + chr2R 7091343 intron esn + chr2R_15_7090001 chr2R_7090001 RAL-303_100b 1474 chr2R 7102476 7102478 chr2R 7102602 7102614 5 131 40.0 48.5 44.2 0.1 138 chr2R 7102476 intron esn + chr2R 7102545 intron esn + chr2R 7102614 intron esn + chr2R_5_7100001 chr2R_7100001 RAL-303_100b 1475 chr2R 7102481 7102487 chr2R 7102596 7102605 6 127 34.0 46.5 40.2 0.1 124 chr2R 7102481 intron esn + chr2R 7102543 intron esn + chr2R 7102605 intron esn + chr2R_6_7100001 chr2R_7100001 RAL-303_100b 1476 chr2R 7120989 7121008 chr2R 7121133 7121139 7 142 53.5 48.0 50.8 0.1 150 chr2R 7120989 intron esn + chr2R 7121064 intron esn + chr2R 7121139 intron esn + chr2R_7_7120001 chr2R_7120001 RAL-303_100b 1477 chr2R 7121009 7121046 chr2R 7121132 7121190 21 136 48.0 48.5 48.2 0.4 181 chr2R 7121009 intron esn + chr2R 7121100 intron esn + chr2R 7121190 intron esn + chr2R_21_7120001 chr2R_7120001 RAL-303_100b 1478 chr2R 7128581 7128630 chr2R 7129404 7129457 28 825 45.5 40.0 42.8 0.6 876 chr2R 7128581 exon Cyp9b1 - chr2R 7129019 exon Cyp9b1 - chr2R 7129457 exon Cyp9b1 - chr2R_28_7125001 chr2R_7125001 RAL-303_100b 1479 chr2R 7139944 7139948 chr2R 7141461 7141465 hopper2 4 1517 10.0 46.0 28.0 0.1 1521 chr2R 7139944 intergenic not near genes chr2R 7140704 intergenic not near genes chr2R 7141465 intergenic not near genes chr2R_4_7140001 chr2R_7140001 RAL-303_100b 1480 chr2R 7139951 7139955 chr2R 7141431 7141442 hopper2 5 1503 7.5 25.0 16.2 0.3 1491 chr2R 7139951 intergenic not near genes chr2R 7140696 intergenic not near genes chr2R 7141442 intergenic not near genes chr2R_5_7140001 chr2R_7140001 RAL-303_100b 1481 chr2R 7143601 7143661 chr2R 7143735 7143795 40 131 36.0 42.5 39.2 1.0 194 chr2R 7143601 intergenic not near genes chr2R 7143698 intergenic not near genes chr2R 7143795 intergenic not near genes chr2R_40_7140001 chr2R_7140001 RAL-303_100b 1482 chr2R 7153136 7153151 chr2R 7153247 7153262 5 108 48.0 41.5 44.8 0.1 126 chr2R 7153136 intron,exon pk +,Spn43Ab - chr2R 7153199 intron,intron pk +,Spn43Ab - chr2R 7153262 intron,intron pk +,Spn43Ab - chr2R_5_7150001 chr2R_7150001 RAL-303_100b 1483 chr2R 7153152 7153190 chr2R 7153246 7153301 15 108 42.0 41.5 41.8 0.4 149 chr2R 7153152 intron,intron pk +,Spn43Ab - chr2R 7153226 intron,intron pk +,Spn43Ab - chr2R 7153301 intron,intron pk +,Spn43Ab - chr2R_15_7150001 chr2R_7150001 RAL-303_100b 1484 chr2R 7160527 7160586 chr2R 7160630 7160678 18 102 49.0 45.5 47.2 0.4 151 chr2R 7160527 intron pk + chr2R 7160602 intron pk + chr2R 7160678 intron pk + chr2R_18_7160001 chr2R_7160001 RAL-303_100b 1485 chr2R 7164246 7164286 chr2R 7164462 7164477 22 214 43.5 48.5 46.0 0.5 231 chr2R 7164246 intron pk + chr2R 7164362 intron pk + chr2R 7164477 intron pk + chr2R_22_7160001 chr2R_7160001 RAL-303_100b 1486 chr2R 7171249 7171282 chr2R 7171360 7171393 17 110 37.0 42.5 39.8 0.4 144 chr2R 7171249 intron pk + chr2R 7171321 intron pk + chr2R 7171393 intron pk + chr2R_17_7170001 chr2R_7170001 RAL-303_100b 1487 chr2R 7185502 7185547 chr2R 7185603 7185661 25 106 35.5 42.5 39.0 0.6 159 chr2R 7185502 intron pk + chr2R 7185582 intron pk + chr2R 7185661 intron pk + chr2R_25_7185001 chr2R_7185001 RAL-303_100b 1488 chr2R 7196548 7196603 chr2R 7201348 7201351 F-element 26 4798 8.5 11.0 9.8 2.4 4803 chr2R 7196548 intron pk + chr2R 7198950 intron pk + chr2R 7201351 intron pk + chr2R_26_7195001 chr2R_7195001 RAL-303_100b 1489 chr2R 7209860 7209873 chr2R 7217646 7217659 roo 17 7785 1.0 29.5 15.2 1.0 7799 chr2R 7209860 intron pk + chr2R 7213760 intron pk + chr2R 7217659 intron pk + chr2R_17_7210001 chr2R_7210001 RAL-303_100b 1490 chr2R 7235799 7235849 chr2R 7240916 7240958 jockey 50 5114 15.0 8.5 11.8 3.9 5159 chr2R 7235799 intergenic not near genes chr2R 7238378 intergenic not near genes chr2R 7240958 intergenic not near genes chr2R_50_7235001 chr2R_7235001 RAL-303_100b 1491 chr2R 7262179 7262194 chr2R 7269265 7269280 297 4 7085 23.5 28.0 25.8 0.1 7101 chr2R 7262179 intergenic not near genes chr2R 7265730 intergenic not near genes chr2R 7269280 intergenic not near genes chr2R_4_7265001 chr2R_7265001 RAL-303_100b 1492 chr2R 7262198 7262215 chr2R 7269263 7269300 297 9 7080 16.0 26.0 21.0 0.4 7102 chr2R 7262198 intergenic not near genes chr2R 7265749 intergenic not near genes chr2R 7269300 intergenic not near genes chr2R_9_7265001 chr2R_7265001 RAL-303_100b 1493 chr2R 7328111 7328152 chr2R 7328242 7328278 19 135 31.5 36.0 33.8 0.5 167 chr2R 7328111 intron,intron Dscam1 -,CR45129 + chr2R 7328194 intron,intron Dscam1 -,CR45129 + chr2R 7328278 intron,intron Dscam1 -,CR45129 + chr2R_19_7325001 chr2R_7325001 RAL-303_100b 1494 chr2R 7353368 7353417 chr2R 7353499 7353548 29 131 42.5 39.5 41.0 0.7 180 chr2R 7353368 intron Dscam1 - chr2R 7353458 intron Dscam1 - chr2R 7353548 intron Dscam1 - chr2R_29_7350001 chr2R_7350001 RAL-303_100b 1495 chr2R 7359836 7359851 chr2R 7360121 7360136 4 285 75.0 51.0 63.0 0.1 300 chr2R 7359836 intron Dscam1 - chr2R 7359986 intron Dscam1 - chr2R 7360136 intron Dscam1 - chr2R_4_7355001 chr2R_7355001 RAL-303_100b 1496 chr2R 7417901 7418169 chr2R 7418012 7418273 50 103 37.5 55.5 46.5 1.1 372 chr2R 7417901 intergenic not near genes chr2R 7418087 intergenic not near genes chr2R 7418273 intergenic not near genes chr2R_50_7415001 chr2R_7415001 RAL-303_100b 1497 chr2R 7434876 7434895 chr2R 7439202 7439221 Juan 19 4325 21.0 31.0 26.0 0.7 4345 chr2R 7434876 intergenic so + chr2R 7437048 intergenic not near genes chr2R 7439221 intergenic not near genes chr2R_19_7435001 chr2R_7435001 RAL-303_100b 1498 chr2R 7434898 7434915 chr2R 7439185 7439224 Juan 16 4322 19.0 19.0 19.0 0.8 4326 chr2R 7434898 intergenic so + chr2R 7437061 intergenic not near genes chr2R 7439224 intergenic not near genes chr2R_16_7435001 chr2R_7435001 RAL-303_100b 1499 chr2R 7459256 7459278 chr2R 7459369 7459391 19 112 23.5 8.0 15.8 1.1 135 chr2R 7459256 intergenic Inos -,CG11141 - chr2R 7459324 intergenic CG11141 -,Inos - chr2R 7459391 intergenic CG11141 - chr2R_19_7455001 chr2R_7455001 RAL-303_100b 1500 chr2R 7608381 7608447 chr2R 7613609 7613674 I-element 34 5225 8.0 0.0 4.0 6.8 5293 chr2R 7608381 intron CG1358 - chr2R 7611028 intron CG1358 - chr2R 7613674 intron CG1358 - chr2R_34_7610001 chr2R_7610001 RAL-303_100b 1501 chr2R 7625096 7625162 chr2R 7625226 7625286 12 127 15.0 15.5 15.2 0.7 190 chr2R 7625096 intron CG43340 + chr2R 7625191 intron CG43340 + chr2R 7625286 intron CG43340 + chr2R_12_7625001 chr2R_7625001 RAL-303_100b 1502 chr2R 7714060 7714117 chr2R 7714161 7714193 27 101 44.0 38.5 41.2 0.6 133 chr2R 7714060 exon CG1942 + chr2R 7714126 3` UTR CG1942 + chr2R 7714193 intergenic CG1942 + chr2R_27_7710001 chr2R_7710001 RAL-303_100b 1503 chr2R 7725996 7726000 chr2R 7726113 7726117 4 117 56.5 20.5 38.5 0.1 121 chr2R 7725996 intron CG18812 - chr2R 7726056 intron CG18812 - chr2R 7726117 intron CG18812 - chr2R_4_7725001 chr2R_7725001 RAL-303_100b 1504 chr2R 7737885 7738184 chr2R 7737989 7738286 31 103 69.0 25.0 47.0 0.6 401 chr2R 7737885 intergenic not near genes chr2R 7738086 intergenic not near genes chr2R 7738286 intergenic not near genes chr2R_31_7735001 chr2R_7735001 RAL-303_100b 1505 chr2R 7738189 7738195 chr2R 7738280 7738297 7 100 61.5 59.5 60.5 0.1 108 chr2R 7738189 intergenic not near genes chr2R 7738243 intergenic not near genes chr2R 7738297 intergenic not near genes chr2R_7_7735001 chr2R_7735001 RAL-303_100b 1506 chr2R 7742745 7742762 chr2R 7742853 7742870 4 107 29.5 41.5 35.5 0.1 125 chr2R 7742745 intron,intron CG30497 -,CG45093 - chr2R 7742808 intron,intron CG30497 -,CG45093 - chr2R 7742870 intron,intron CG30497 -,CG45093 - chr2R_4_7740001 chr2R_7740001 RAL-303_100b 1507 chr2R 7742768 7742793 chr2R 7742852 7742870 7 93 37.5 42.0 39.8 0.2 102 chr2R 7742768 intron,intron CG30497 -,CG45093 - chr2R 7742819 intron,intron CG30497 -,CG45093 - chr2R 7742870 intron,intron CG30497 -,CG45093 - chr2R_7_7740001 chr2R_7740001 RAL-303_100b 1508 chr2R 7743455 7743510 chr2R 7743561 7743614 14 104 31.0 24.5 27.8 0.5 159 chr2R 7743455 intron,intron CG30497 -,CG45093 - chr2R 7743534 intron,intron CG30497 -,CG45093 - chr2R 7743614 intron,intron CG30497 -,CG45093 - chr2R_14_7740001 chr2R_7740001 RAL-303_100b 1509 chr2R 7750764 7750805 chr2R 7750867 7750875 13 90 44.5 55.0 49.8 0.3 111 chr2R 7750764 intron,intron CG30497 -,CG45093 - chr2R 7750820 intron,intron CG30497 -,CG45093 - chr2R 7750875 intron,intron CG30497 -,CG45093 - chr2R_13_7750001 chr2R_7750001 RAL-303_100b 1510 chr2R 7750806 7750816 chr2R 7750866 7750922 7 85 39.0 53.0 46.0 0.1 116 chr2R 7750806 intron,intron CG30497 -,CG45093 - chr2R 7750864 intron,intron CG30497 -,CG45093 - chr2R 7750922 intron,intron CG30497 -,CG45093 - chr2R_7_7750001 chr2R_7750001 RAL-303_100b 1511 chr2R 7769715 7769768 chr2R 7769817 7769870 23 102 30.5 32.0 31.2 0.7 155 chr2R 7769715 intron,intron CG30497 -,CG45093 - chr2R 7769792 intron,intron CG30497 -,CG45093 - chr2R 7769870 intron,intron CG30497 -,CG45093 - chr2R_23_7765001 chr2R_7765001 RAL-303_100b 1512 chr2R 7781127 7781129 chr2R 21855538 21855540 4 14074411 56.5 21.5 39.0 0.1 14074413 chr2R 7781127 intron,intron CG30497 -,CG45093 - chr2R 14818334 exon CG10202 - chr2R 21855540 intergenic not near genes chr2R_4_14815001 chr2R_14815001 RAL-303_100b 1513 chr2R 7815649 7815654 chr2R 7822141 7822148 Burdock 5 6493 39.5 15.5 27.5 0.2 6499 chr2R 7815649 intergenic CG1882 + chr2R 7818898 intergenic not near genes chr2R 7822148 3` UTR cathD - chr2R_5_7815001 chr2R_7815001 RAL-303_100b 1514 chr2R 7815656 7815702 chr2R 7822140 7822181 Burdock 57 6490 19.0 15.0 17.0 3.2 6525 chr2R 7815656 intergenic CG1882 + chr2R 7818918 intergenic not near genes chr2R 7822181 3` UTR cathD - chr2R_57_7815001 chr2R_7815001 RAL-303_100b 1515 chr2R 7861925 7861949 chr2R 7862147 7862171 10 221 45.0 39.5 42.2 0.2 246 chr2R 7861925 intron Dgk - chr2R 7862048 intron Dgk - chr2R 7862171 intron Dgk - chr2R_10_7860001 chr2R_7860001 RAL-303_100b 1516 chr2R 7862207 7862251 chr2R 7867346 7867372 flea 16 5136 16.0 13.5 14.8 1.0 5165 chr2R 7862207 intron Dgk - chr2R 7864790 intron Dgk - chr2R 7867372 intron Dgk - chr2R_16_7860001 chr2R_7860001 RAL-303_100b 1517 chr2R 7869169 7869174 chr2R 7873979 7873985 Doc 5 4811 43.0 16.5 29.8 0.2 4816 chr2R 7869169 intron Dgk - chr2R 7871577 intron Dgk - chr2R 7873985 intron Dgk - chr2R_5_7870001 chr2R_7870001 RAL-303_100b 1518 chr2R 7869175 7869215 chr2R 7873976 7874019 Doc 38 4808 20.5 15.0 17.8 2.0 4844 chr2R 7869175 intron Dgk - chr2R 7871597 intron Dgk - chr2R 7874019 intron Dgk - chr2R_38_7870001 chr2R_7870001 RAL-303_100b 1519 chr2R 7873995 7874037 chr2R 7874129 7874171 26 126 35.5 39.0 37.2 0.7 176 chr2R 7873995 intron Dgk - chr2R 7874083 intron Dgk - chr2R 7874171 intron Dgk - chr2R_26_7870001 chr2R_7870001 RAL-303_100b 1520 chr2R 7901661 7901717 chr2R 7901856 7901912 25 188 40.5 39.0 39.8 0.6 251 chr2R 7901661 intron CG30377 + chr2R 7901786 intron CG30377 + chr2R 7901912 intron CG30377 + chr2R_25_7900001 chr2R_7900001 RAL-303_100b 1521 chr2R 7915689 7915745 chr2R 7915806 7915862 23 116 43.5 50.5 47.0 0.5 173 chr2R 7915689 intron CG12159 - chr2R 7915776 intron CG12159 - chr2R 7915862 intron CG12159 - chr2R_23_7915001 chr2R_7915001 RAL-303_100b 1522 chr2R 7997414 7997455 chr2R 7997545 7997586 21 130 30.5 37.0 33.8 0.6 172 chr2R 7997414 exon Hey - chr2R 7997500 intron Hey - chr2R 7997586 intron Hey - chr2R_21_7995001 chr2R_7995001 RAL-303_100b 1523 chr2R 7999577 7999592 chr2R 7999665 7999700 9 105 30.0 21.0 25.5 0.3 123 chr2R 7999577 intergenic not near genes chr2R 7999638 intergenic not near genes chr2R 7999700 intergenic not near genes chr2R_9_7995001 chr2R_7995001 RAL-303_100b 1524 chr2R 8014399 8014455 chr2R 8014509 8014565 48 107 13.0 14.0 13.5 3.3 166 chr2R 8014399 intergenic not near genes chr2R 8014482 intergenic not near genes chr2R 8014565 intergenic not near genes chr2R_48_8010001 chr2R_8010001 RAL-303_100b 1525 chr2R 8015627 8015649 chr2R 8017675 8017697 11 2048 37.0 21.0 29.0 0.4 2070 chr2R 8015627 intergenic mir-4981 + chr2R 8016662 intergenic not near genes chr2R 8017697 intergenic not near genes chr2R_11_8015001 chr2R_8015001 RAL-303_100b 1526 chr2R 8015651 8015666 chr2R 8017669 8017713 15 2036 28.5 16.5 22.5 0.6 2062 chr2R 8015651 intergenic mir-4981 + chr2R 8016682 intergenic not near genes chr2R 8017713 intergenic not near genes chr2R_15_8015001 chr2R_8015001 RAL-303_100b 1527 chr2R 8015667 8015681 chr2R 8017667 8017724 10 2038 15.0 16.0 15.5 0.6 2057 chr2R 8015667 intergenic mir-4981 + chr2R 8016696 intergenic not near genes chr2R 8017724 intergenic not near genes chr2R_10_8015001 chr2R_8015001 RAL-303_100b 1528 chr2R 8026791 8026833 chr2R 8026892 8026934 9 101 12.0 13.5 12.8 0.7 143 chr2R 8026791 intergenic CR45267 + chr2R 8026862 intergenic CR45267 + chr2R 8026934 intergenic CR45267 + chr2R_9_8025001 chr2R_8025001 RAL-303_100b 1529 chr2R 8041021 8041043 chr2R 8041136 8041158 8 115 33.5 31.5 32.5 0.2 137 chr2R 8041021 intron Optix + chr2R 8041090 intron Optix + chr2R 8041158 intron Optix + chr2R_8_8040001 chr2R_8040001 RAL-303_100b 1530 chr2R 8067039 8067092 chr2R 8067148 8067201 34 106 42.5 44.5 43.5 0.8 162 chr2R 8067039 intron CG17977 - chr2R 8067120 intron CG17977 - chr2R 8067201 exon CG17977 - chr2R_34_8065001 chr2R_8065001 RAL-303_100b 1531 chr2R 8089238 8089287 chr2R 8089340 8089372 48 108 11.0 11.0 11.0 4.0 134 chr2R 8089238 3` UTR sut2 + chr2R 8089305 intergenic sut2 +,sut3 + chr2R 8089372 intergenic sut2 +,sut3 + chr2R_48_8085001 chr2R_8085001 RAL-303_100b 1532 chr2R 8105911 8105933 chr2R 8106027 8106049 14 115 54.0 45.5 49.8 0.3 138 chr2R 8105911 5` UTR Cul4 - chr2R 8105980 intron Cul4 - chr2R 8106049 5` UTR Cul4 - chr2R_14_8105001 chr2R_8105001 RAL-303_100b 1533 chr2R 8105935 8105966 chr2R 8106026 8106077 18 110 37.5 45.0 41.2 0.4 142 chr2R 8105935 5` UTR Cul4 - chr2R 8106006 intron Cul4 - chr2R 8106077 5` UTR Cul4 - chr2R_18_8105001 chr2R_8105001 RAL-303_100b 1534 chr2R 8157879 8157896 chr2R 8157992 8158002 8 110 50.5 48.0 49.2 0.2 123 chr2R 8157879 5` UTR CR44068 + chr2R 8157940 5` UTR CR44068 + chr2R 8158002 5` UTR CR44068 + chr2R_8_8155001 chr2R_8155001 RAL-303_100b 1535 chr2R 8157897 8157909 chr2R 8157988 8158011 11 108 47.5 45.5 46.5 0.2 114 chr2R 8157897 5` UTR CR44068 + chr2R 8157954 5` UTR CR44068 + chr2R 8158011 5` UTR CR44068 + chr2R_11_8155001 chr2R_8155001 RAL-303_100b 1536 chr2R 8160910 8160943 chr2R 8161025 8161058 1360 16 113 58.5 64.0 61.2 0.3 148 chr2R 8160910 exon CG8708 - chr2R 8160984 intron CG8708 - chr2R 8161058 intron CG8708 - chr2R_16_8160001 chr2R_8160001 RAL-303_100b 1537 chr2R 8203734 8203777 chr2R 8203851 8203894 24 115 33.0 26.5 29.8 0.8 160 chr2R 8203734 intron LRP1 + chr2R 8203814 intron LRP1 + chr2R 8203894 intron LRP1 + chr2R_24_8200001 chr2R_8200001 RAL-303_100b 1538 chr2R 8236014 8236015 chr2R 8236120 8236121 4 106 29.0 4.5 16.8 0.2 107 chr2R 8236014 intergenic not near genes chr2R 8236068 intergenic not near genes chr2R 8236121 intergenic not near genes chr2R_4_8235001 chr2R_8235001 RAL-303_100b 1539 chr2R 8236016 8236055 chr2R 8236117 8236160 20 103 10.5 4.0 7.2 2.4 144 chr2R 8236016 intergenic not near genes chr2R 8236088 intergenic not near genes chr2R 8236160 intergenic not near genes chr2R_20_8235001 chr2R_8235001 RAL-303_100b 1540 chr2R 8277610 8277669 chr2R 8277730 8277788 58 109 13.0 11.0 12.0 4.5 178 chr2R 8277610 5` UTR CR44280 + chr2R 8277699 5` UTR CR44280 + chr2R 8277788 5` UTR CR44280 + chr2R_58_8275001 chr2R_8275001 RAL-303_100b 1541 chr2R 8308661 8308717 chr2R 8308772 8308823 14 104 41.0 37.0 39.0 0.3 162 chr2R 8308661 intergenic not near genes chr2R 8308742 intergenic not near genes chr2R 8308823 intergenic not near genes chr2R_14_8305001 chr2R_8305001 RAL-303_100b 1542 chr2R 8330839 8330851 chr2R 8331350 8331362 roo 7 509 32.5 16.5 24.5 0.3 523 chr2R 8330839 intron pdm3 + chr2R 8331100 intron pdm3 + chr2R 8331362 intron pdm3 + chr2R_7_8330001 chr2R_8330001 RAL-303_100b 1543 chr2R 8330852 8330889 chr2R 8331347 8331400 roo 37 507 14.0 15.5 14.8 2.3 548 chr2R 8330852 intron pdm3 + chr2R 8331126 intron pdm3 + chr2R 8331400 intron pdm3 + chr2R_37_8330001 chr2R_8330001 RAL-303_100b 1544 chr2R 8338621 8338640 chr2R 8338728 8338741 8 106 23.0 44.5 33.8 0.2 120 chr2R 8338621 intron pdm3 + chr2R 8338681 intron pdm3 + chr2R 8338741 intron pdm3 + chr2R_8_8335001 chr2R_8335001 RAL-303_100b 1545 chr2R 8338641 8338668 chr2R 8338725 8338775 16 97 29.0 43.5 36.2 0.4 134 chr2R 8338641 intron pdm3 + chr2R 8338708 intron pdm3 + chr2R 8338775 intron pdm3 + chr2R_16_8335001 chr2R_8335001 RAL-303_100b 1546 chr2R 8345247 8345289 chr2R 8345342 8345353 19 91 48.0 43.0 45.5 0.4 106 chr2R 8345247 intron pdm3 + chr2R 8345300 intron pdm3 + chr2R 8345353 intron pdm3 + chr2R_19_8345001 chr2R_8345001 RAL-303_100b 1547 chr2R 8368165 8368216 chr2R 8368270 8368321 24 102 42.0 48.5 45.2 0.5 156 chr2R 8368165 intron pdm3 + chr2R 8368243 intron pdm3 + chr2R 8368321 intron pdm3 + chr2R_24_8365001 chr2R_8365001 RAL-303_100b 1548 chr2R 8379764 8379818 chr2R 8379885 8379939 19 115 41.0 44.0 42.5 0.4 175 chr2R 8379764 intron pdm3 + chr2R 8379852 intron pdm3 + chr2R 8379939 intron pdm3 + chr2R_19_8375001 chr2R_8375001 RAL-303_100b 1549 chr2R 8398182 8398239 chr2R 8402988 8403045 Doc 41 4803 18.5 12.0 15.2 2.5 4863 chr2R 8398182 intron CG2121 - chr2R 8400614 intron CG2121 - chr2R 8403045 intron CG2121 - chr2R_41_8400001 chr2R_8400001 RAL-303_100b 1550 chr2R 8408810 8408865 chr2R 8408963 8409009 13 144 41.0 56.0 48.5 0.3 199 chr2R 8408810 intron CG2121 - chr2R 8408910 intron CG2121 - chr2R 8409009 intron CG2121 - chr2R_13_8405001 chr2R_8405001 RAL-303_100b 1551 chr2R 8416296 8416311 chr2R 8417145 8417155 I-element 10 848 13.5 13.5 13.5 0.7 859 chr2R 8416296 intergenic not near genes chr2R 8416726 intergenic CG43296 - chr2R 8417155 intergenic CG43296 - chr2R_10_8415001 chr2R_8415001 RAL-303_100b 1552 chr2R 8483937 8483989 chr2R 8484038 8484090 29 99 39.5 42.0 40.8 0.7 153 chr2R 8483937 intron mtt - chr2R 8484014 intron mtt - chr2R 8484090 intron mtt - chr2R_29_8480001 chr2R_8480001 RAL-303_100b 1553 chr2R 8488890 8488940 chr2R 8488996 8489043 19 104 46.5 57.0 51.8 0.4 153 chr2R 8488890 intron mtt - chr2R 8488966 intron mtt - chr2R 8489043 intron mtt - chr2R_19_8485001 chr2R_8485001 RAL-303_100b 1554 chr2R 8489706 8489756 chr2R 8489804 8489860 11 97 36.0 32.5 34.2 0.3 154 chr2R 8489706 intron mtt - chr2R 8489783 intron mtt - chr2R 8489860 intron mtt - chr2R_11_8485001 chr2R_8485001 RAL-303_100b 1555 chr2R 8490585 8490588 chr2R 8492337 8492338 Rt1c 4 1751 35.0 37.5 36.2 0.1 1753 chr2R 8490585 intron mtt - chr2R 8491462 intron mtt - chr2R 8492338 intron mtt - chr2R_4_8490001 chr2R_8490001 RAL-303_100b 1556 chr2R 8508755 8508778 chr2R 8508847 8508886 13 105 28.5 42.5 35.5 0.4 131 chr2R 8508755 intron mtt - chr2R 8508820 intron mtt - chr2R 8508886 intron mtt - chr2R_13_8505001 chr2R_8505001 RAL-303_100b 1557 chr2R 8508779 8508794 chr2R 8508842 8508902 15 99 30.5 40.5 35.5 0.4 123 chr2R 8508779 intron mtt - chr2R 8508840 intron mtt - chr2R 8508902 intron mtt - chr2R_15_8505001 chr2R_8505001 RAL-303_100b 1558 chr2R 8518773 8518793 chr2R 12066267 12066287 18 3547494 57.0 0.0 28.5 0.6 3547514 chr2R 8518773 intron mtt - chr2R 10292530 intron CAP + chr2R 12066287 intron CG8888 - chr2R_18_10290001 chr2R_10290001 RAL-303_100b 1559 chr2R 8534796 8534850 chr2R 8534907 8534961 24 110 34.5 33.0 33.8 0.7 165 chr2R 8534796 intergenic not near genes chr2R 8534878 intergenic not near genes chr2R 8534961 intergenic not near genes chr2R_24_8530001 chr2R_8530001 RAL-303_100b 1560 chr2R 8536220 8536256 chr2R 8536433 8536470 23 213 54.5 40.5 47.5 0.5 250 chr2R 8536220 intergenic not near genes chr2R 8536345 intergenic not near genes chr2R 8536470 intergenic not near genes chr2R_23_8535001 chr2R_8535001 RAL-303_100b 1561 chr2R 8565360 8565397 chr2R 8565464 8565501 14 100 48.5 49.0 48.8 0.3 141 chr2R 8565360 exon Cyp6a14 - chr2R 8565430 exon Cyp6a14 - chr2R 8565501 exon Cyp6a14 - chr2R_14_8565001 chr2R_8565001 RAL-303_100b 1562 chr2R 8565399 8565407 chr2R 8565463 8565511 6 96 46.5 48.5 47.5 0.1 112 chr2R 8565399 exon Cyp6a14 - chr2R 8565455 exon Cyp6a14 - chr2R 8565511 exon Cyp6a14 - chr2R_6_8565001 chr2R_8565001 RAL-303_100b 1563 chr2R 8566006 8566035 chr2R 8566983 8566993 1360 17 975 34.0 18.5 26.2 0.6 987 chr2R 8566006 5` UTR Cyp6a14 - chr2R 8566500 5` UTR Cyp6a14 - chr2R 8566993 5` UTR Cyp6a14 - chr2R_17_8565001 chr2R_8565001 RAL-303_100b 1564 chr2R 8566037 8566066 chr2R 8566981 8567037 1360 31 969 17.5 16.5 17.0 1.7 1000 chr2R 8566037 5` UTR Cyp6a14 - chr2R 8566537 5` UTR Cyp6a14 - chr2R 8567037 5` UTR Cyp6a14 - chr2R_31_8565001 chr2R_8565001 RAL-303_100b 1565 chr2R 8612554 8612610 chr2R 8612656 8612712 61 101 17.5 18.0 17.8 3.2 158 chr2R 8612554 intron CG8642 - chr2R 8612633 intron CG8642 - chr2R 8612712 intron CG8642 - chr2R_61_8610001 chr2R_8610001 RAL-303_100b 1566 chr2R 8635908 8635933 chr2R 8636011 8636035 10 101 0.0 24.0 12.0 0.8 127 chr2R 8635908 intergenic not near genes chr2R 8635972 intergenic not near genes chr2R 8636035 intergenic not near genes chr2R_10_8635001 chr2R_8635001 RAL-303_100b 1567 chr2R 8601367 8601397 chr2R 8686462 8686492 6 85096 43.0 45.5 44.2 0.1 85125 chr2R 8601367 intron rgr + chr2R 8643930 intergenic not near genes chr2R 8686492 intergenic not near genes chr2R_6_8640001 chr2R_8640001 RAL-303_100b 1568 chr2R 8722737 8722795 chr2R 8723003 8723049 pogo 56 260 12.5 10.0 11.2 4.6 312 chr2R 8722737 intron CG14767 - chr2R 8722893 intron CG14767 - chr2R 8723049 intron CG14767 - chr2R_56_8720001 chr2R_8720001 RAL-303_100b 1569 chr2R 8764097 8764128 chr2R 8764271 8764293 15 172 49.5 41.0 45.2 0.3 196 chr2R 8764097 intergenic not near genes chr2R 8764195 intergenic not near genes chr2R 8764293 intergenic not near genes chr2R_15_8760001 chr2R_8760001 RAL-303_100b 1570 chr2R 8777887 8777943 chr2R 8784100 8784159 diver 26 6221 10.5 8.5 9.5 2.5 6272 chr2R 8777887 intergenic not near genes chr2R 8781023 intergenic not near genes chr2R 8784159 intergenic not near genes chr2R_26_8780001 chr2R_8780001 RAL-303_100b 1571 chr2R 8806304 8806355 chr2R 8806523 8806579 26 222 56.5 51.0 53.8 0.5 275 chr2R 8806304 intron sns + chr2R 8806442 intron sns + chr2R 8806579 intron sns + chr2R_26_8805001 chr2R_8805001 RAL-303_100b 1572 chr2R 8827743 8827792 chr2R 8827836 8827893 31 99 52.5 54.0 53.2 0.6 150 chr2R 8827743 intron,3` UTR sns +,CG30350 + chr2R 8827818 intron sns + chr2R 8827893 intron sns + chr2R_31_8825001 chr2R_8825001 RAL-303_100b 1573 chr2R 8849207 8849260 chr2R 8849309 8849363 33 101 41.0 37.5 39.2 0.8 156 chr2R 8849207 intron sns + chr2R 8849285 intron sns + chr2R 8849363 intron sns + chr2R_33_8845001 chr2R_8845001 RAL-303_100b 1574 chr2R 8966128 8966183 chr2R 8966243 8966298 40 114 45.5 45.5 45.5 0.9 170 chr2R 8966128 intron CG8216 - chr2R 8966213 intron CG8216 - chr2R 8966298 intron CG8216 - chr2R_40_8965001 chr2R_8965001 RAL-303_100b 1575 chr2R 8967107 8967162 chr2R 8967222 8967277 28 114 45.0 44.5 44.8 0.6 170 chr2R 8967107 intron CG8216 - chr2R 8967192 intron CG8216 - chr2R 8967277 intron CG8216 - chr2R_28_8965001 chr2R_8965001 RAL-303_100b 1576 chr2R 8976177 8976225 chr2R 8976291 8976339 33 113 44.0 41.0 42.5 0.8 162 chr2R 8976177 intron CG8213 - chr2R 8976258 intron CG8213 - chr2R 8976339 intron CG8213 - chr2R_33_8975001 chr2R_8975001 RAL-303_100b 1577 chr2R 8983285 8983342 chr2R 8983393 8983447 40 103 45.5 54.0 49.8 0.8 162 chr2R 8983285 intron CG8213 - chr2R 8983366 intron CG8213 - chr2R 8983447 intron CG8213 - chr2R_40_8980001 chr2R_8980001 RAL-303_100b 1578 chr2R 9052709 9052711 chr2R 9052815 9052817 4 106 46.0 29.5 37.8 0.1 108 chr2R 9052709 intron CG13743 - chr2R 9052763 intron CG13743 - chr2R 9052817 intron CG13743 - chr2R_4_9050001 chr2R_9050001 RAL-303_100b 1579 chr2R 9052712 9052725 chr2R 9052813 9052831 7 105 40.5 29.5 35.0 0.2 119 chr2R 9052712 intron CG13743 - chr2R 9052772 intron CG13743 - chr2R 9052831 intron CG13743 - chr2R_7_9050001 chr2R_9050001 RAL-303_100b 1580 chr2R 9052727 9052732 chr2R 9052808 9052838 6 102 36.5 31.0 33.8 0.2 111 chr2R 9052727 intron CG13743 - chr2R 9052782 intron CG13743 - chr2R 9052838 intron CG13743 - chr2R_6_9050001 chr2R_9050001 RAL-303_100b 1581 chr2R 9055413 9055466 chr2R 9055562 9055619 22 152 45.0 46.5 45.8 0.5 206 chr2R 9055413 intron CG13743 - chr2R 9055516 intron CG13743 - chr2R 9055619 intron CG13743 - chr2R_22_9055001 chr2R_9055001 RAL-303_100b 1582 chr2R 9110130 9110169 chr2R 9110244 9110283 22 112 38.0 39.5 38.8 0.6 153 chr2R 9110130 intergenic Pmm45A - chr2R 9110206 intergenic Pmm45A - chr2R 9110283 intergenic not near genes chr2R_22_9110001 chr2R_9110001 RAL-303_100b 1583 chr2R 9122811 9122838 chr2R 9122922 9122936 13 104 44.0 50.5 47.2 0.3 125 chr2R 9122811 exon GstE13 + chr2R 9122874 exon GstE13 + chr2R 9122936 exon GstE13 + chr2R_13_9120001 chr2R_9120001 RAL-303_100b 1584 chr2R 9122840 9122863 chr2R 9122921 9122974 11 104 38.5 51.0 44.8 0.2 134 chr2R 9122840 exon GstE13 + chr2R 9122907 exon GstE13 + chr2R 9122974 exon GstE13 + chr2R_11_9120001 chr2R_9120001 RAL-303_100b 1585 chr2R 9151275 9151331 chr2R 9157770 9157826 Burdock 43 6492 21.0 16.0 18.5 2.2 6551 chr2R 9151275 exon CG30345 + chr2R 9154550 intergenic not near genes chr2R 9157826 intergenic CG8008 - chr2R_43_9150001 chr2R_9150001 RAL-303_100b 1586 chr2R 9212675 9212719 chr2R 9213181 9213221 roo 40 507 11.0 15.0 13.0 2.9 546 chr2R 9212675 intergenic CR45309 + chr2R 9212948 intergenic CR45309 + chr2R 9213221 5` UTR CR45309 + chr2R_40_9210001 chr2R_9210001 RAL-303_100b 1587 chr2R 9216223 9216279 chr2R 9216359 9216411 8 133 35.5 43.5 39.5 0.2 188 chr2R 9216223 intergenic not near genes chr2R 9216317 intergenic not near genes chr2R 9216411 intergenic not near genes chr2R_8_9215001 chr2R_9215001 RAL-303_100b 1588 chr2R 9230204 9230209 chr2R 9230306 9230314 6 104 57.5 47.0 52.2 0.1 110 chr2R 9230204 intron hig - chr2R 9230259 intron hig - chr2R 9230314 exon hig - chr2R_6_9230001 chr2R_9230001 RAL-303_100b 1589 chr2R 9230213 9230243 chr2R 9230303 9230341 24 98 49.5 46.0 47.8 0.5 128 chr2R 9230213 intron hig - chr2R 9230277 intron hig - chr2R 9230341 exon hig - chr2R_24_9230001 chr2R_9230001 RAL-303_100b 1590 chr2R 9270427 9270475 chr2R 9270533 9270587 31 103 48.5 54.0 51.2 0.6 160 chr2R 9270427 intron Pkn - chr2R 9270507 intron Pkn - chr2R 9270587 intron Pkn - chr2R_31_9270001 chr2R_9270001 RAL-303_100b 1591 chr2R 9328893 9328944 chr2R 9329020 9329071 26 125 55.0 49.0 52.0 0.5 178 chr2R 9328893 intron,intron CG13739 -,CG13954 - chr2R 9328982 intron,intron CG13739 -,CG13954 - chr2R 9329071 intron,intron CG13739 -,CG13954 - chr2R_26_9325001 chr2R_9325001 RAL-303_100b 1592 chr2R 9341402 9341459 chr2R 9341512 9341564 25 107 38.5 40.5 39.5 0.6 162 chr2R 9341402 intron,intron CG13739 -,CG13954 - chr2R 9341483 intron,intron CG13739 -,CG13954 - chr2R 9341564 intron,intron CG13739 -,CG13954 - chr2R_25_9340001 chr2R_9340001 RAL-303_100b 1593 chr2R 9352252 9352254 chr2R 9361427 9361428 roo 5 9175 15.5 48.0 31.8 0.2 9176 chr2R 9352252 intron CG13954 - chr2R 9356840 intron CG13954 - chr2R 9361428 intron CG13954 - chr2R_5_9355001 chr2R_9355001 RAL-303_100b 1594 chr2R 9368102 9368151 chr2R 9368203 9368220 40 96 13.5 0.0 6.8 5.1 118 chr2R 9368102 intron CG13954 - chr2R 9368161 intron CG13954 - chr2R 9368220 intron CG13954 - chr2R_40_9365001 chr2R_9365001 RAL-303_100b 1595 chr2R 9388630 9388685 chr2R 9388742 9388794 37 110 41.5 40.0 40.8 0.9 164 chr2R 9388630 5` UTR CG13954 - chr2R 9388712 5` UTR CG13954 - chr2R 9388794 5` UTR CG13954 - chr2R_37_9385001 chr2R_9385001 RAL-303_100b 1596 chr2R 9407812 9407851 chr2R 9407930 9407969 24 117 52.5 50.5 51.5 0.5 157 chr2R 9407812 intron wun - chr2R 9407890 intron wun - chr2R 9407969 intron wun - chr2R_24_9405001 chr2R_9405001 RAL-303_100b 1597 chr2R 9462865 9462919 chr2R 9462967 9463010 24 103 37.0 36.5 36.8 0.6 145 chr2R 9462865 intron Camta + chr2R 9462938 intron Camta + chr2R 9463010 intron Camta + chr2R_24_9460001 chr2R_9460001 RAL-303_100b 1598 chr2R 9466650 9466687 chr2R 9466755 9466793 12 103 12.5 19.5 16.0 0.7 143 chr2R 9466650 intron Camta + chr2R 9466722 intron Camta + chr2R 9466793 intron Camta + chr2R_12_9465001 chr2R_9465001 RAL-303_100b 1599 chr2R 9480050 9480100 chr2R 9490606 9490656 roo 34 10555 11.5 12.5 12.0 2.6 10606 chr2R 9480050 intergenic not near genes chr2R 9485353 intergenic not near genes chr2R 9490656 intergenic not near genes chr2R_34_9485001 chr2R_9485001 RAL-303_100b 1600 chr2R 9509411 9509455 chr2R 9509520 9509563 23 102 24.5 11.0 17.8 1.2 152 chr2R 9509411 intron brp + chr2R 9509487 intron brp + chr2R 9509563 intron brp + chr2R_23_9505001 chr2R_9505001 RAL-303_100b 1601 chr2R 9510644 9510697 chr2R 9510780 9510838 31 136 12.0 5.0 8.5 3.3 194 chr2R 9510644 exon brp + chr2R 9510741 intron brp + chr2R 9510838 exon brp + chr2R_31_9510001 chr2R_9510001 RAL-303_100b 1602 chr2R 9529016 9529072 chr2R 9529123 9529179 35 104 43.5 44.5 44.0 0.8 163 chr2R 9529016 intron brp + chr2R 9529098 intron brp + chr2R 9529179 intron brp + chr2R_35_9525001 chr2R_9525001 RAL-303_100b 1603 chr2R 9541609 9541655 chr2R 9541711 9541757 46 100 7.0 22.0 14.5 3.0 148 chr2R 9541609 intergenic brp +,CG1888 - chr2R 9541683 intergenic brp +,CG1888 - chr2R 9541757 intergenic CG1888 -,brp + chr2R_46_9540001 chr2R_9540001 RAL-303_100b 1604 chr2R 9561826 9561849 chr2R 9561936 9561962 15 111 32.0 33.0 32.5 0.4 136 chr2R 9561826 3` UTR,intron CR45281 -,CG1809 + chr2R 9561894 3` UTR,intron CR45281 -,CG1809 + chr2R 9561962 3` UTR,intron CR45281 -,CG1809 + chr2R_15_9560001 chr2R_9560001 RAL-303_100b 1605 chr2R 9616613 9616626 chr2R 9616743 9616756 5 130 60.5 47.0 53.8 0.1 143 chr2R 9616613 intron Mmp2 - chr2R 9616684 intron Mmp2 - chr2R 9616756 intron Mmp2 - chr2R_5_9615001 chr2R_9615001 RAL-303_100b 1606 chr2R 9616627 9616646 chr2R 9616741 9616776 7 126 56.0 47.0 51.5 0.1 149 chr2R 9616627 intron Mmp2 - chr2R 9616702 intron Mmp2 - chr2R 9616776 intron Mmp2 - chr2R_7_9615001 chr2R_9615001 RAL-303_100b 1607 chr2R 9656346 9656404 chr2R 9656459 9656497 12 107 41.5 30.0 35.8 0.3 151 chr2R 9656346 intron Mmp2 - chr2R 9656422 intron Mmp2 - chr2R 9656497 intron Mmp2 - chr2R_12_9655001 chr2R_9655001 RAL-303_100b 1608 chr2R 9726593 9726606 chr2R 9734169 9734182 17.6 13 7576 31.5 12.5 22.0 0.6 7589 chr2R 9726593 intron sqa - chr2R 9730388 intron sqa - chr2R 9734182 intron sqa - chr2R_13_9730001 chr2R_9730001 RAL-303_100b 1609 chr2R 9726611 9726642 chr2R 9734162 9734211 17.6 25 7571 17.5 10.5 14.0 1.7 7600 chr2R 9726611 intron sqa - chr2R 9730411 intron sqa - chr2R 9734211 intron sqa - chr2R_25_9730001 chr2R_9730001 RAL-303_100b 1610 chr2R 9761288 9761297 chr2R 9761389 9761398 7 101 42.0 52.5 47.2 0.1 110 chr2R 9761288 intron trpl + chr2R 9761343 intron trpl + chr2R 9761398 intron trpl + chr2R_7_9760001 chr2R_9760001 RAL-303_100b 1611 chr2R 9805402 9805433 chr2R 9805508 9805539 6 106 14.0 26.5 20.2 0.3 137 chr2R 9805402 intron CG1688 - chr2R 9805470 intron CG1688 - chr2R 9805539 intron CG1688 - chr2R_6_9805001 chr2R_9805001 RAL-303_100b 1612 chr2R 9869917 9869950 chr2R 9870047 9870080 32 128 51.5 33.5 42.5 0.7 163 chr2R 9869917 intron cbx - chr2R 9869998 intron cbx - chr2R 9870080 intron cbx - chr2R_32_9865001 chr2R_9865001 RAL-303_100b 1613 chr2R 9871015 9871074 chr2R 9871526 9871585 roo 79 508 20.5 19.5 20.0 3.8 570 chr2R 9871015 intron cbx - chr2R 9871300 intron cbx - chr2R 9871585 intron,5` UTR cbx -,CG18446 + chr2R_79_9870001 chr2R_9870001 RAL-303_100b 1614 chr2R 9934307 9934363 chr2R 9934424 9934480 28 113 40.0 39.0 39.5 0.7 173 chr2R 9934307 intron Mef2 - chr2R 9934394 intron Mef2 - chr2R 9934480 intron Mef2 - chr2R_28_9930001 chr2R_9930001 RAL-303_100b 1615 chr2R 7071628 7071648 chr2R 9941238 9941244 4 2869601 57.0 65.5 61.2 0.1 2869616 chr2R 7071628 3` UTR CG12831 - chr2R 8506436 intron mtt - chr2R 9941244 intron Mef2 - chr2R_4_8505001 chr2R_8505001 RAL-303_100b 1616 chr2R 9945428 9945441 chr2R 9945639 9945662 BS 10 217 32.5 26.5 29.5 0.3 234 chr2R 9945428 intron Mef2 - chr2R 9945545 intron Mef2 - chr2R 9945662 intron Mef2 - chr2R_10_9945001 chr2R_9945001 RAL-303_100b 1617 chr2R 9945442 9945467 chr2R 9945630 9945683 BS 34 216 18.0 19.0 18.5 1.7 241 chr2R 9945442 intron Mef2 - chr2R 9945562 intron Mef2 - chr2R 9945683 intron Mef2 - chr2R_34_9945001 chr2R_9945001 RAL-303_100b 1618 chr2R 9950270 9950325 chr2R 9950372 9950427 26 101 37.0 42.5 39.8 0.6 157 chr2R 9950270 intron Mef2 - chr2R 9950348 intron Mef2 - chr2R 9950427 intron Mef2 - chr2R_26_9950001 chr2R_9950001 RAL-303_100b 1619 chr2R 9998052 9998092 chr2R 9998171 9998206 12 119 35.0 37.5 36.2 0.3 154 chr2R 9998052 intron Pka-R2 - chr2R 9998129 intron Pka-R2 - chr2R 9998206 intron Pka-R2 - chr2R_12_9995001 chr2R_9995001 RAL-303_100b 1620 chr2R 10005826 10005875 chr2R 10007016 10007065 1360 20 1186 36.5 33.5 35.0 0.6 1239 chr2R 10005826 intron Pka-R2 - chr2R 10006446 intron Pka-R2 - chr2R 10007065 intron Pka-R2 - chr2R_20_10005001 chr2R_10005001 RAL-303_100b 1621 chr2R 10005878 10005883 chr2R 10007013 10007039 1360 6 1156 30.5 31.5 31.0 0.2 1161 chr2R 10005878 intron Pka-R2 - chr2R 10006458 intron Pka-R2 - chr2R 10007039 intron Pka-R2 - chr2R_6_10005001 chr2R_10005001 RAL-303_100b 1622 chr2R 10017624 10017680 chr2R 10017728 10017784 26 103 42.5 41.5 42.0 0.6 160 chr2R 10017624 intron Pka-R2 - chr2R 10017704 intron Pka-R2 - chr2R 10017784 intron Pka-R2 - chr2R_26_10015001 chr2R_10015001 RAL-303_100b 1623 chr2R 10047797 10047833 chr2R 10047905 10047941 9 106 19.5 25.5 22.5 0.4 144 chr2R 10047797 intron oys - chr2R 10047869 intron oys - chr2R 10047941 intron oys - chr2R_9_10045001 chr2R_10045001 RAL-303_100b 1624 chr2R 10053498 10053549 chr2R 10053626 10053677 24 126 18.5 11.0 14.8 1.5 179 chr2R 10053498 intron magu + chr2R 10053588 intron magu + chr2R 10053677 intron magu + chr2R_24_10050001 chr2R_10050001 RAL-303_100b 1625 chr2R 10132164 10132220 chr2R 10132269 10132312 34 103 9.5 11.0 10.2 3.0 148 chr2R 10132164 intron gem + chr2R 10132238 intron gem + chr2R 10132312 exon gem + chr2R_34_10130001 chr2R_10130001 RAL-303_100b 1626 chr2R 10133471 10133529 chr2R 10133574 10133610 25 98 42.5 42.5 42.5 0.6 139 chr2R 10133471 intron gem + chr2R 10133540 intron gem + chr2R 10133610 intron gem + chr2R_25_10130001 chr2R_10130001 RAL-303_100b 1627 chr2R 10147620 10147672 chr2R 10147728 10147775 23 107 41.5 36.0 38.8 0.6 155 chr2R 10147620 intron KCNQ - chr2R 10147698 intron KCNQ - chr2R 10147775 intron KCNQ - chr2R_23_10145001 chr2R_10145001 RAL-303_100b 1628 chr2R 10168332 10168363 chr2R 10168434 10168459 9 99 18.5 18.0 18.2 0.5 127 chr2R 10168332 intron KCNQ - chr2R 10168396 intron KCNQ - chr2R 10168459 intron KCNQ - chr2R_9_10165001 chr2R_10165001 RAL-303_100b 1629 chr2R 10171086 10171144 chr2R 10171195 10171253 31 108 20.0 27.0 23.5 1.3 167 chr2R 10171086 intron KCNQ - chr2R 10171170 intron KCNQ - chr2R 10171253 intron KCNQ - chr2R_31_10170001 chr2R_10170001 RAL-303_100b 1630 chr2R 10172610 10172652 chr2R 10172747 10172784 41 135 24.0 0.0 12.0 3.2 174 chr2R 10172610 intron KCNQ - chr2R 10172697 intron KCNQ - chr2R 10172784 intron KCNQ - chr2R_41_10170001 chr2R_10170001 RAL-303_100b 1631 chr2R 10174450 10174500 chr2R 10174564 10174628 15 110 39.0 49.5 44.2 0.3 178 chr2R 10174450 intron KCNQ - chr2R 10174539 intron KCNQ - chr2R 10174628 intron KCNQ - chr2R_15_10170001 chr2R_10170001 RAL-303_100b 1632 chr2R 10176851 10176861 chr2R 10186046 10186056 roo 8 9195 37.0 8.0 22.5 0.3 9205 chr2R 10176851 intron KCNQ - chr2R 10181454 intron KCNQ - chr2R 10186056 intron KCNQ - chr2R_8_10180001 chr2R_10180001 RAL-303_100b 1633 chr2R 10176862 10176909 chr2R 10186044 10186100 roo 27 9191 12.5 7.0 9.8 2.5 9238 chr2R 10176862 intron KCNQ - chr2R 10181481 intron KCNQ - chr2R 10186100 intron KCNQ - chr2R_27_10180001 chr2R_10180001 RAL-303_100b 1634 chr2R 10189187 10189234 chr2R 10189283 10189337 43 102 32.5 35.5 34.0 1.2 150 chr2R 10189187 intron KCNQ - chr2R 10189262 intron KCNQ - chr2R 10189337 intron KCNQ - chr2R_43_10185001 chr2R_10185001 RAL-303_100b 1635 chr2R 10189974 10190023 chr2R 10190075 10190124 35 98 86.0 92.0 89.0 0.4 150 chr2R 10189974 intron KCNQ - chr2R 10190049 intron KCNQ - chr2R 10190124 intron KCNQ - chr2R_35_10190001 chr2R_10190001 RAL-303_100b 1636 chr2R 10190414 10190456 chr2R 10190523 10190530 12 99 48.0 34.0 41.0 0.3 116 chr2R 10190414 intron KCNQ - chr2R 10190472 intron KCNQ - chr2R 10190530 intron KCNQ - chr2R_12_10190001 chr2R_10190001 RAL-303_100b 1637 chr2R 10194376 10194401 chr2R 10194544 10194571 14 169 41.5 38.0 39.8 0.3 195 chr2R 10194376 intergenic not near genes chr2R 10194474 intergenic not near genes chr2R 10194571 intergenic not near genes chr2R_14_10190001 chr2R_10190001 RAL-303_100b 1638 chr2R 10197359 10197376 chr2R 10197470 10197487 13 111 39.5 22.0 30.8 0.4 128 chr2R 10197359 3` UTR CG34221 - chr2R 10197423 3` UTR CG34221 - chr2R 10197487 3` UTR CG34221 - chr2R_13_10195001 chr2R_10195001 RAL-303_100b 1639 chr2R 10197379 10197416 chr2R 10197469 10197527 25 108 25.0 22.5 23.8 1.0 148 chr2R 10197379 3` UTR CG34221 - chr2R 10197453 3` UTR CG34221 - chr2R 10197527 3` UTR CG34221 - chr2R_25_10195001 chr2R_10195001 RAL-303_100b 1640 chr2R 10203619 10203661 chr2R 10203729 10203771 50 108 19.0 13.0 16.0 2.9 152 chr2R 10203619 intergenic not near genes chr2R 10203695 intergenic not near genes chr2R 10203771 intergenic not near genes chr2R_50_10200001 chr2R_10200001 RAL-303_100b 1641 chr2R 10216166 10216220 chr2R 10216269 10216323 19 99 37.5 40.5 39.0 0.5 157 chr2R 10216166 intron,intron CG12912 -,Hr46 - chr2R 10216244 intron,intron CG12912 -,Hr46 - chr2R 10216323 intron,intron CG12912 -,Hr46 - chr2R_19_10215001 chr2R_10215001 RAL-303_100b 1642 chr2R 10225717 10225751 chr2R 10225814 10225858 8 106 33.5 35.5 34.5 0.2 141 chr2R 10225717 intron,intron CG12912 -,Hr46 - chr2R 10225788 intron,intron CG12912 -,Hr46 - chr2R 10225858 intron,intron CG12912 -,Hr46 - chr2R_8_10225001 chr2R_10225001 RAL-303_100b 1643 chr2R 10266475 10266528 chr2R 10266585 10266644 18 99 15.0 9.0 12.0 1.4 169 chr2R 10266475 intron CG12910 + chr2R 10266560 intron CG12910 + chr2R 10266644 intron CG12910 + chr2R_18_10265001 chr2R_10265001 RAL-303_100b 1644 chr2R 10274796 10274806 chr2R 10274898 10274907 11 101 24.0 0.0 12.0 0.8 111 chr2R 10274796 intron CAP + chr2R 10274852 intron CAP + chr2R 10274907 intron CAP + chr2R_11_10270001 chr2R_10270001 RAL-303_100b 1645 chr2R 10274807 10274827 chr2R 10274897 10274919 13 98 16.0 0.0 8.0 1.4 112 chr2R 10274807 intron CAP + chr2R 10274863 intron CAP + chr2R 10274919 intron CAP + chr2R_13_10270001 chr2R_10270001 RAL-303_100b 1646 chr2R 10300624 10300676 chr2R 10300745 10300780 27 119 44.5 37.5 41.0 0.6 156 chr2R 10300624 intron CAP + chr2R 10300702 intron CAP + chr2R 10300780 intron CAP + chr2R_27_10300001 chr2R_10300001 RAL-303_100b 1647 chr2R 10313291 10313353 chr2R 10313404 10313435 44 111 4.5 12.0 8.2 4.8 144 chr2R 10313291 intergenic not near genes chr2R 10313363 intergenic not near genes chr2R 10313435 intergenic Ndg + chr2R_44_10310001 chr2R_10310001 RAL-303_100b 1648 chr2R 10319690 10319740 chr2R 10319807 10319816 30 114 43.5 45.0 44.2 0.7 126 chr2R 10319690 intron Ndg + chr2R 10319753 intron Ndg + chr2R 10319816 intron Ndg + chr2R_30_10315001 chr2R_10315001 RAL-303_100b 1649 chr2R 10322070 10322080 chr2R 10322172 10322187 7 106 15.0 30.0 22.5 0.3 117 chr2R 10322070 3` UTR Ndg + chr2R 10322128 intergenic Ndg + chr2R 10322187 intergenic Ndg + chr2R_7_10320001 chr2R_10320001 RAL-303_100b 1650 chr2R 10352650 10352668 chr2R 10352752 10352770 10 101 58.0 48.0 53.0 0.2 120 chr2R 10352650 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352710 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352770 intron,exon,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R_10_10350001 chr2R_10350001 RAL-303_100b 1651 chr2R 10352671 10352703 chr2R 10352750 10352803 19 99 50.5 48.0 49.2 0.4 132 chr2R 10352671 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352737 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352803 intron,exon,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R_19_10350001 chr2R_10350001 RAL-303_100b 1652 chr2R 10368951 10369010 chr2R 10369064 10369123 58 111 11.0 15.5 13.2 4.1 172 chr2R 10368951 intron CG42732 - chr2R 10369037 intron CG42732 - chr2R 10369123 intron CG42732 - chr2R_58_10365001 chr2R_10365001 RAL-303_100b 1653 chr2R 10372676 10372682 chr2R 10372783 10372789 6 107 9.0 10.5 9.8 0.6 113 chr2R 10372676 intron CG42732 - chr2R 10372732 intron CG42732 - chr2R 10372789 intron CG42732 - chr2R_6_10370001 chr2R_10370001 RAL-303_100b 1654 chr2R 10376703 10376909 chr2R 10376856 10377057 14 145 36.0 36.0 36.0 0.4 354 chr2R 10376703 intron CG42732 - chr2R 10376880 intron CG42732 - chr2R 10377057 intron CG42732 - chr2R_14_10375001 chr2R_10375001 RAL-303_100b 1655 chr2R 10387981 10387998 chr2R 10388103 10388120 10 122 28.5 47.5 38.0 0.3 139 chr2R 10387981 intron CG42732 - chr2R 10388050 intron CG42732 - chr2R 10388120 intron CG42732 - chr2R_10_10385001 chr2R_10385001 RAL-303_100b 1656 chr2R 10387999 10388003 chr2R 10388100 10388125 6 118 32.0 48.0 40.0 0.1 126 chr2R 10387999 intron CG42732 - chr2R 10388062 intron CG42732 - chr2R 10388125 intron CG42732 - chr2R_6_10385001 chr2R_10385001 RAL-303_100b 1657 chr2R 10406756 10406792 chr2R 10406858 10406887 14 95 35.5 44.5 40.0 0.3 131 chr2R 10406756 intron CG42732 - chr2R 10406822 intron CG42732 - chr2R 10406887 intron CG42732 - chr2R_14_10405001 chr2R_10405001 RAL-303_100b 1658 chr2R 10409036 10409084 chr2R 10409138 10409185 37 101 0.0 15.5 7.8 4.2 149 chr2R 10409036 intron CG42732 - chr2R 10409110 intron CG42732 - chr2R 10409185 intron,exon CG42732 -,CG33477 - chr2R_37_10405001 chr2R_10405001 RAL-303_100b 1659 chr2R 10411777 10411835 chr2R 10411884 10411941 55 105 14.0 17.5 15.8 3.3 164 chr2R 10411777 intron CG42732 - chr2R 10411859 intron CG42732 - chr2R 10411941 intron CG42732 - chr2R_55_10410001 chr2R_10410001 RAL-303_100b 1660 chr2R 10417955 10417965 chr2R 10418079 10418084 6 125 2.5 23.5 13.0 0.4 129 chr2R 10417955 intergenic not near genes chr2R 10418020 intergenic not near genes chr2R 10418084 intergenic not near genes chr2R_6_10415001 chr2R_10415001 RAL-303_100b 1661 chr2R 10419671 10419690 chr2R 10425331 10425339 5 5653 16.0 62.5 39.2 0.1 5668 chr2R 10419671 3` UTR Prx2540-2 + chr2R 10422505 intron,exon CG11825 -,CG33474 + chr2R 10425339 exon Prx2540-1 + chr2R_5_10420001 chr2R_10420001 RAL-303_100b 1662 chr2R 10428993 10429050 chr2R 10429095 10429137 30 98 35.5 31.5 33.5 0.9 144 chr2R 10428993 intergenic not near genes chr2R 10429065 intergenic not near genes chr2R 10429137 intergenic not near genes chr2R_30_10425001 chr2R_10425001 RAL-303_100b 1663 chr2R 10432073 10432133 chr2R 10432176 10432236 31 102 48.0 47.5 47.8 0.6 163 chr2R 10432073 intron RanBPM + chr2R 10432154 intron RanBPM + chr2R 10432236 intron RanBPM + chr2R_31_10430001 chr2R_10430001 RAL-303_100b 1664 chr2R 10457506 10457550 chr2R 10457615 10457659 15 103 29.0 35.0 32.0 0.5 153 chr2R 10457506 intron,intron Galphao +,Cyp49a1 - chr2R 10457582 intron,intron Galphao +,Cyp49a1 - chr2R 10457659 intron,intron Galphao +,Cyp49a1 - chr2R_15_10455001 chr2R_10455001 RAL-303_100b 1665 chr2R 10468999 10469055 chr2R 10469150 10469206 41 150 54.5 42.5 48.5 0.8 207 chr2R 10468999 intron CG11777 + chr2R 10469102 intron CG11777 + chr2R 10469206 exon CG11777 + chr2R_41_10465001 chr2R_10465001 RAL-303_100b 1666 chr2R 10477145 10477175 chr2R 10477506 10477540 21 364 46.0 18.0 32.0 0.6 395 chr2R 10477145 intron whd - chr2R 10477342 intron whd - chr2R 10477540 intron whd - chr2R_21_10475001 chr2R_10475001 RAL-303_100b 1667 chr2R 10517489 10517505 chr2R 10517602 10517618 9 111 49.5 42.0 45.8 0.2 129 chr2R 10517489 intron lola - chr2R 10517554 intron lola - chr2R 10517618 intron lola - chr2R_9_10515001 chr2R_10515001 RAL-303_100b 1668 chr2R 10517510 10517544 chr2R 10517601 10517632 25 109 39.0 42.0 40.5 0.6 122 chr2R 10517510 intron lola - chr2R 10517571 intron lola - chr2R 10517632 intron lola - chr2R_25_10515001 chr2R_10515001 RAL-303_100b 1669 chr2R 10546539 10546590 chr2R 10546655 10546706 26 116 44.0 44.0 44.0 0.6 167 chr2R 10546539 intergenic not near genes chr2R 10546622 intergenic not near genes chr2R 10546706 intergenic not near genes chr2R_26_10545001 chr2R_10545001 RAL-303_100b 1670 chr2R 10548109 10548136 chr2R 10548209 10548210 21 95 5.0 37.0 21.0 1.0 101 chr2R 10548109 intergenic not near genes chr2R 10548160 intergenic not near genes chr2R 10548210 intergenic not near genes chr2R_21_10545001 chr2R_10545001 RAL-303_100b 1671 chr2R 10562958 10563232 chr2R 10563061 10563355 32 105 0.0 0.5 0.2 26.7 397 chr2R 10562958 intron psq + chr2R 10563156 intron psq + chr2R 10563355 intron psq + chr2R_32_10560001 chr2R_10560001 RAL-303_100b 1672 chr2R 10563545 10563579 chr2R 10563629 10563667 24 98 41.5 52.5 47.0 0.5 122 chr2R 10563545 intron psq + chr2R 10563606 intron psq + chr2R 10563667 intron psq + chr2R_24_10560001 chr2R_10560001 RAL-303_100b 1673 chr2R 10563902 10563924 chr2R 10564117 10564140 16 215 0.0 16.5 8.2 1.7 238 chr2R 10563902 intron psq + chr2R 10564021 intron psq + chr2R 10564140 intron psq + chr2R_16_10560001 chr2R_10560001 RAL-303_100b 1674 chr2R 10574598 10574637 chr2R 10574705 10574732 5 103 52.0 45.5 48.8 0.1 134 chr2R 10574598 intron psq + chr2R 10574665 intron psq + chr2R 10574732 intron psq + chr2R_5_10570001 chr2R_10570001 RAL-303_100b 1675 chr2R 10585573 10585576 chr2R 10594181 10594184 Tirant 6 8608 23.0 31.5 27.2 0.2 8611 chr2R 10585573 intron psq + chr2R 10589878 intron psq + chr2R 10594184 intron psq + chr2R_6_10585001 chr2R_10585001 RAL-303_100b 1676 chr2R 10585577 10585586 chr2R 10594164 10594194 Tirant 15 8603 15.5 21.0 18.2 0.8 8617 chr2R 10585577 intron psq + chr2R 10589886 intron psq + chr2R 10594194 intron psq + chr2R_15_10585001 chr2R_10585001 RAL-303_100b 1677 chr2R 10585587 10585590 chr2R 10594163 10594190 Tirant 6 8599 13.0 20.5 16.8 0.3 8603 chr2R 10585587 intron psq + chr2R 10589888 intron psq + chr2R 10594190 intron psq + chr2R_6_10585001 chr2R_10585001 RAL-303_100b 1678 chr2R 10622326 10622355 chr2R 10637115 10637144 mdg1 14 14787 20.0 9.5 14.8 0.9 14818 chr2R 10622326 intron CG11883 + chr2R 10629735 intron CG11883 + chr2R 10637144 intron CG11883 + chr2R_14_10625001 chr2R_10625001 RAL-303_100b 1679 chr2R 10644033 10644086 chr2R 10644136 10644189 46 102 7.5 0.0 3.8 9.6 156 chr2R 10644033 intron Git - chr2R 10644111 intron Git - chr2R 10644189 intron Git - chr2R_46_10640001 chr2R_10640001 RAL-303_100b 1680 chr2R 10668042 10668084 chr2R 10668143 10668185 16 96 14.0 36.0 25.0 0.6 143 chr2R 10668042 intergenic not near genes chr2R 10668114 intergenic not near genes chr2R 10668185 intergenic not near genes chr2R_16_10665001 chr2R_10665001 RAL-303_100b 1681 chr2R 10671272 10671287 chr2R 10671380 10671395 9 108 18.0 37.5 27.8 0.3 123 chr2R 10671272 intergenic not near genes chr2R 10671334 intergenic not near genes chr2R 10671395 intergenic not near genes chr2R_9_10670001 chr2R_10670001 RAL-303_100b 1682 chr2R 10675357 10675380 chr2R 10675463 10675486 12 105 11.0 10.5 10.8 1.0 129 chr2R 10675357 intron stan + chr2R 10675422 intron stan + chr2R 10675486 intron stan + chr2R_12_10675001 chr2R_10675001 RAL-303_100b 1683 chr2R 10750059 10750115 chr2R 10750164 10750188 17 101 42.5 41.5 42.0 0.4 129 chr2R 10750059 intron CG33144 - chr2R 10750124 intron CG33144 - chr2R 10750188 intron CG33144 - chr2R_17_10750001 chr2R_10750001 RAL-303_100b 1684 chr2R 10778347 10778397 chr2R 10778450 10778504 30 102 41.5 45.5 43.5 0.7 157 chr2R 10778347 intron CG33144 - chr2R 10778426 intron CG33144 - chr2R 10778504 intron CG33144 - chr2R_30_10775001 chr2R_10775001 RAL-303_100b 1685 chr2R 10790118 10790175 chr2R 10790231 10790273 27 111 49.5 55.0 52.2 0.5 155 chr2R 10790118 intron CG33144 - chr2R 10790196 intron CG33144 - chr2R 10790273 intron CG33144 - chr2R_27_10790001 chr2R_10790001 RAL-303_100b 1686 chr2R 10827306 10827362 chr2R 10827419 10827475 34 110 52.0 47.5 49.8 0.7 169 chr2R 10827306 exon CG12325 + chr2R 10827390 3` UTR CG12325 + chr2R 10827475 3` UTR,3` UTR CG12325 +,CG12344 - chr2R_34_10825001 chr2R_10825001 RAL-303_100b 1687 chr2R 10897978 10898034 chr2R 10898079 10898135 12 99 36.0 27.0 31.5 0.4 157 chr2R 10897978 intergenic Rpb5 -,CG7712 - chr2R 10898056 3` UTR Rpb5 - chr2R 10898135 3` UTR Rpb5 - chr2R_12_10895001 chr2R_10895001 RAL-303_100b 1688 chr2R 10947067 10947118 chr2R 10947179 10947221 14 109 15.5 0.0 7.8 1.6 154 chr2R 10947067 5` UTR CR45228 + chr2R 10947144 intergenic CR45228 + chr2R 10947221 intergenic CR45228 + chr2R_14_10945001 chr2R_10945001 RAL-303_100b 1689 chr2R 10948015 10948015 chr2R 10955581 10955591 17.6 4 7570 22.0 38.5 30.2 0.1 7576 chr2R 10948015 intergenic not near genes chr2R 10951803 intergenic not near genes chr2R 10955591 intergenic not near genes chr2R_4_10950001 chr2R_10950001 RAL-303_100b 1690 chr2R 10948016 10948062 chr2R 10955576 10955616 17.6 27 7566 32.0 35.0 33.5 0.8 7600 chr2R 10948016 intergenic not near genes chr2R 10951816 intergenic not near genes chr2R 10955616 intergenic not near genes chr2R_27_10950001 chr2R_10950001 RAL-303_100b 1691 chr2R 10959066 10959107 chr2R 10959170 10959211 35 101 2.5 12.0 7.2 4.3 145 chr2R 10959066 intergenic not near genes chr2R 10959138 intergenic not near genes chr2R 10959211 intergenic not near genes chr2R_35_10955001 chr2R_10955001 RAL-303_100b 1692 chr2R 10979643 10979648 chr2R 10980138 10980143 297 4 495 24.0 20.0 22.0 0.2 500 chr2R 10979643 intergenic not near genes chr2R 10979893 intergenic not near genes chr2R 10980143 intergenic not near genes chr2R_4_10975001 chr2R_10975001 RAL-303_100b 1693 chr2R 10979649 10979684 chr2R 10980136 10980177 297 21 489 10.0 18.5 14.2 1.4 528 chr2R 10979649 intergenic not near genes chr2R 10979913 intergenic not near genes chr2R 10980177 intergenic not near genes chr2R_21_10975001 chr2R_10975001 RAL-303_100b 1694 chr2R 10989479 10989486 chr2R 10989576 10989590 6 102 28.0 49.5 38.8 0.2 111 chr2R 10989479 intron luna - chr2R 10989534 intron luna - chr2R 10989590 intron luna - chr2R_6_10985001 chr2R_10985001 RAL-303_100b 1695 chr2R 11009790 11009848 chr2R 11018989 11019047 roo 43 9190 16.0 28.0 22.0 1.9 9257 chr2R 11009790 intron luna - chr2R 11014418 intron luna - chr2R 11019047 intron luna - chr2R_43_11010001 chr2R_11010001 RAL-303_100b 1696 chr2R 11019857 11019872 chr2R 11024948 11024963 jockey 10 5090 25.5 15.0 20.2 0.5 5106 chr2R 11019857 intron luna - chr2R 11022410 intron luna - chr2R 11024963 intron luna - chr2R_10_11020001 chr2R_11020001 RAL-303_100b 1697 chr2R 11019873 11019908 chr2R 11024942 11024999 jockey 31 5083 12.0 12.0 12.0 2.4 5126 chr2R 11019873 intron luna - chr2R 11022436 intron luna - chr2R 11024999 intron luna - chr2R_31_11020001 chr2R_11020001 RAL-303_100b 1698 chr2R 11032622 11032665 chr2R 11032741 11032784 20 118 16.5 20.0 18.2 1.0 162 chr2R 11032622 intron luna - chr2R 11032703 intron luna - chr2R 11032784 intron luna - chr2R_20_11030001 chr2R_11030001 RAL-303_100b 1699 chr2R 11034264 11034314 chr2R 11034492 11034537 27 228 36.0 28.5 32.2 0.8 273 chr2R 11034264 intron luna - chr2R 11034400 intron luna - chr2R 11034537 intron luna - chr2R_27_11030001 chr2R_11030001 RAL-303_100b 1700 chr2R 11044571 11044575 chr2R 11044672 11044676 5 101 17.0 23.0 20.0 0.2 105 chr2R 11044571 intron luna - chr2R 11044624 intron luna - chr2R 11044676 intron luna - chr2R_5_11040001 chr2R_11040001 RAL-303_100b 1701 chr2R 11044578 11044624 chr2R 11044669 11044725 28 97 17.0 22.5 19.8 1.3 147 chr2R 11044578 intron luna - chr2R 11044652 intron luna - chr2R 11044725 intron luna - chr2R_28_11040001 chr2R_11040001 RAL-303_100b 1702 chr2R 11083429 11083469 chr2R 11083614 11083641 30 185 42.0 28.0 35.0 0.8 212 chr2R 11083429 intron luna - chr2R 11083535 intron luna - chr2R 11083641 intron luna - chr2R_30_11080001 chr2R_11080001 RAL-303_100b 1703 chr2R 11102842 11102869 chr2R 11102948 11102976 12 107 59.5 27.0 43.2 0.3 134 chr2R 11102842 intron luna - chr2R 11102909 intron luna - chr2R 11102976 intron luna - chr2R_12_11100001 chr2R_11100001 RAL-303_100b 1704 chr2R 11129407 11129460 chr2R 11132036 11132089 32 2632 92.5 112.0 102.2 0.3 2682 chr2R 11129407 intergenic not near genes chr2R 11130748 intergenic not near genes chr2R 11132089 intergenic not near genes chr2R_32_11130001 chr2R_11130001 RAL-303_100b 1705 chr2R 11134094 11134140 chr2R 11134356 11134402 pogo 15 261 30.5 35.0 32.8 0.4 308 chr2R 11134094 intergenic not near genes chr2R 11134248 intergenic not near genes chr2R 11134402 intergenic not near genes chr2R_15_11130001 chr2R_11130001 RAL-303_100b 1706 chr2R 11138198 11138238 chr2R 11138351 11138391 25 150 45.5 46.5 46.0 0.5 193 chr2R 11138198 intron BBS4 + chr2R 11138294 intron BBS4 + chr2R 11138391 intron BBS4 + chr2R_25_11135001 chr2R_11135001 RAL-303_100b 1707 chr2R 11154197 11154207 chr2R 11154342 11154352 6 145 7.0 8.5 7.8 0.7 155 chr2R 11154197 intron CG13229 - chr2R 11154274 intron CG13229 - chr2R 11154352 intron CG13229 - chr2R_6_11150001 chr2R_11150001 RAL-303_100b 1708 chr2R 11158597 11158651 chr2R 11160485 11160539 21 1886 57.0 77.5 67.2 0.3 1942 chr2R 11158597 intron CG13229 - chr2R 11159568 intron,intron CG13229 -,shn + chr2R 11160539 intron,intron CG13229 -,shn + chr2R_21_11155001 chr2R_11155001 RAL-303_100b 1709 chr2R 11161639 11161655 chr2R 11161804 11161820 17 164 45.5 40.5 43.0 0.4 181 chr2R 11161639 intron,intron CG13229 -,shn + chr2R 11161730 intron,intron CG13229 -,shn + chr2R 11161820 intron,intron CG13229 -,shn + chr2R_17_11160001 chr2R_11160001 RAL-303_100b 1710 chr2R 11179249 11179289 chr2R 11179358 11179378 23 106 50.0 49.0 49.5 0.5 129 chr2R 11179249 intron shn + chr2R 11179314 intron shn + chr2R 11179378 intron shn + chr2R_23_11175001 chr2R_11175001 RAL-303_100b 1711 chr2R 11185952 11185975 chr2R 11186069 11186092 7 117 66.0 50.5 58.2 0.1 140 chr2R 11185952 intron shn + chr2R 11186022 intron shn + chr2R 11186092 intron shn + chr2R_7_11185001 chr2R_11185001 RAL-303_100b 1712 chr2R 11207802 11207848 chr2R 11208015 11208065 BS 23 216 36.5 44.5 40.5 0.6 263 chr2R 11207802 intron shn + chr2R 11207934 intron shn + chr2R 11208065 intron shn + chr2R_23_11205001 chr2R_11205001 RAL-303_100b 1713 chr2R 11224093 11224098 chr2R 11224413 11224418 4 320 20.5 31.0 25.8 0.1 325 chr2R 11224093 intron CG7737 + chr2R 11224256 intron CG7737 + chr2R 11224418 intron CG7737 + chr2R_4_11220001 chr2R_11220001 RAL-303_100b 1714 chr2R 11249149 11249202 chr2R 11249300 11249353 43 150 47.0 48.5 47.8 0.9 204 chr2R 11249149 intergenic CG43112 + chr2R 11249251 intergenic CG43112 + chr2R 11249353 intergenic CG43112 + chr2R_43_11245001 chr2R_11245001 RAL-303_100b 1715 chr2R 11250071 11250104 chr2R 11250254 11250283 14 181 7.0 5.0 6.0 2.0 212 chr2R 11250071 intergenic CG43112 +,Or47a + chr2R 11250177 intergenic Or47a +,CG43112 + chr2R 11250283 intergenic Or47a +,CG43112 + chr2R_14_11250001 chr2R_11250001 RAL-303_100b 1716 chr2R 11278725 11278776 chr2R 11278840 11278882 20 105 40.0 30.5 35.2 0.6 157 chr2R 11278725 intergenic CG9067 -,Cpr47Eg - chr2R 11278804 intergenic CG9067 -,Cpr47Eg - chr2R 11278882 intergenic CG9067 -,Cpr47Eg - chr2R_20_11275001 chr2R_11275001 RAL-303_100b 1717 chr2R 11297614 11297641 chr2R 11301963 11301990 flea 18 4349 9.0 0.0 4.5 3.3 4376 chr2R 11297614 intergenic CG42336 - chr2R 11299802 intergenic not near genes chr2R 11301990 5` UTR CG7741 + chr2R_18_11295001 chr2R_11295001 RAL-303_100b 1718 chr2R 11344142 11344148 chr2R 11344263 11344269 9 120 1.5 33.5 17.5 0.5 127 chr2R 11344142 intergenic alphaTry - chr2R 11344206 intergenic alphaTry - chr2R 11344269 3` UTR alphaTry - chr2R_9_11340001 chr2R_11340001 RAL-303_100b 1719 chr2R 11344149 11344181 chr2R 11344256 11344277 20 118 0.0 26.0 13.0 1.4 128 chr2R 11344149 intergenic alphaTry - chr2R 11344213 intergenic alphaTry - chr2R 11344277 3` UTR alphaTry - chr2R_20_11340001 chr2R_11340001 RAL-303_100b 1720 chr2R 8687503 8687503 chr2R 11345354 11345372 4 2657859 55.5 80.0 67.8 0.1 2657869 chr2R 8687503 intergenic not near genes chr2R 10016438 intron Pka-R2 - chr2R 11345372 exon epsilonTry - chr2R_4_10015001 chr2R_10015001 RAL-303_100b 1721 chr2R 11368015 11368034 chr2R 11368115 11368135 11 100 38.0 34.0 36.0 0.3 120 chr2R 11368015 intron CG13204 + chr2R 11368075 intron CG13204 + chr2R 11368135 intron CG13204 + chr2R_11_11365001 chr2R_11365001 RAL-303_100b 1722 chr2R 11404765 11404797 chr2R 11404877 11404908 7 110 44.5 36.5 40.5 0.2 143 chr2R 11404765 intergenic not near genes chr2R 11404836 intergenic not near genes chr2R 11404908 intergenic not near genes chr2R_7_11400001 chr2R_11400001 RAL-303_100b 1723 chr2R 11415495 11415505 chr2R 11418667 11418679 opus 8 3174 28.0 25.5 26.8 0.3 3184 chr2R 11415495 intron Drip - chr2R 11417087 intron Drip - chr2R 11418679 intron Drip - chr2R_8_11415001 chr2R_11415001 RAL-303_100b 1724 chr2R 11415506 11415551 chr2R 11418665 11418725 opus 45 3169 12.5 22.5 17.5 2.4 3219 chr2R 11415506 intron Drip - chr2R 11417116 intron Drip - chr2R 11418725 intron Drip - chr2R_45_11415001 chr2R_11415001 RAL-303_100b 1725 chr2R 11425658 11425685 chr2R 11425763 11425790 16 104 39.5 53.0 46.2 0.3 132 chr2R 11425658 intron Drip - chr2R 11425724 intron Drip - chr2R 11425790 intron Drip - chr2R_16_11425001 chr2R_11425001 RAL-303_100b 1726 chr2R 11436609 11436827 chr2R 11436740 11436921 17 118 44.5 25.5 35.0 0.5 312 chr2R 11436609 intron CG7777 + chr2R 11436765 intron CG7777 + chr2R 11436921 intron CG7777 + chr2R_17_11435001 chr2R_11435001 RAL-303_100b 1727 chr2R 11445588 11445590 chr2R 11445672 11445694 4 96 46.0 70.5 58.2 0.1 106 chr2R 11445588 intron qvr + chr2R 11445641 intron qvr + chr2R 11445694 intron qvr + chr2R_4_11445001 chr2R_11445001 RAL-303_100b 1728 chr2R 1320201 1320201 chr2R 11463556 11463556 invader1 6 10143355 60.5 98.5 79.5 0.1 10143355 chr2R 1320201 intergenic not near genes chr2R 6391878 intergenic not near genes chr2R 11463556 3` UTR E(Pc) + chr2R_6_6390001 chr2R_6390001 RAL-303_100b 1729 chr2R 11472623 11472626 chr2R 11473845 11473848 pogo 6 1222 47.5 18.5 33.0 0.2 1225 chr2R 11472623 intergenic not near genes chr2R 11473236 intergenic not near genes chr2R 11473848 intergenic not near genes chr2R_6_11470001 chr2R_11470001 RAL-303_100b 1730 chr2R 11472628 11472680 chr2R 11473844 11473902 pogo 72 1220 15.5 18.5 17.0 4.0 1274 chr2R 11472628 intergenic not near genes chr2R 11473265 intergenic not near genes chr2R 11473902 intergenic not near genes chr2R_72_11470001 chr2R_11470001 RAL-303_100b 1731 chr2R 11485095 11485145 chr2R 11485194 11485252 18 101 45.5 47.5 46.5 0.4 157 chr2R 11485095 intron inv + chr2R 11485174 intron inv + chr2R 11485252 intron inv + chr2R_18_11485001 chr2R_11485001 RAL-303_100b 1732 chr2R 11539943 11539959 chr2R 11540306 11540322 12 363 54.5 48.0 51.2 0.2 379 chr2R 11539943 intergenic not near genes chr2R 11540132 intergenic not near genes chr2R 11540322 intergenic not near genes chr2R_12_11540001 chr2R_11540001 RAL-303_100b 1733 chr2R 11614600 11614800 chr2R 11614713 11614913 28 113 16.0 22.5 19.2 1.4 313 chr2R 11614600 intron tou - chr2R 11614756 intron tou - chr2R 11614913 intron tou - chr2R_28_11610001 chr2R_11610001 RAL-303_100b 1734 chr2R 11621358 11621399 chr2R 11621520 11621561 18 157 35.0 21.5 28.2 0.6 203 chr2R 11621358 exon CG9005 - chr2R 11621460 intron CG9005 - chr2R 11621561 intron CG9005 - chr2R_18_11620001 chr2R_11620001 RAL-303_100b 1735 chr2R 11631372 11631412 chr2R 11631477 11631517 34 103 0.0 10.0 5.0 5.7 145 chr2R 11631372 intron CG9005 - chr2R 11631444 intron CG9005 - chr2R 11631517 intron CG9005 - chr2R_34_11630001 chr2R_11630001 RAL-303_100b 1736 chr2R 11636406 11636434 chr2R 11636488 11636512 8 84 52.0 40.5 46.2 0.2 106 chr2R 11636406 intron CG9005 - chr2R 11636459 intron CG9005 - chr2R 11636512 intron CG9005 - chr2R_8_11635001 chr2R_11635001 RAL-303_100b 1737 chr2R 11636437 11636442 chr2R 11636487 11636529 6 92 44.0 40.0 42.0 0.1 92 chr2R 11636437 intron CG9005 - chr2R 11636483 intron CG9005 - chr2R 11636529 intron CG9005 - chr2R_6_11635001 chr2R_11635001 RAL-303_100b 1738 chr2R 11637302 11637336 chr2R 11637404 11637438 15 101 23.5 21.0 22.2 0.6 136 chr2R 11637302 intron CG9005 - chr2R 11637370 intron CG9005 - chr2R 11637438 intron CG9005 - chr2R_15_11635001 chr2R_11635001 RAL-303_100b 1739 chr2R 11655614 11655658 chr2R 11655724 11655752 27 116 41.5 42.0 41.8 0.6 138 chr2R 11655614 intron,intron Roc2 -,CG13198 + chr2R 11655683 intron,exon Roc2 -,CG13198 + chr2R 11655752 intron,exon Roc2 -,CG13198 + chr2R_27_11655001 chr2R_11655001 RAL-303_100b 1740 chr2R 11672705 11672718 chr2R 11676128 11676153 5 3425 87.0 57.0 72.0 0.1 3448 chr2R 11672705 intron,intron Roc2 -,Tret1-1 + chr2R 11674429 intron,exon Roc2 -,Tret1-1 + chr2R 11676153 intron,intron Roc2 -,Tret1-2 + chr2R_5_11670001 chr2R_11670001 RAL-303_100b 1741 chr2R 11677847 11677897 chr2R 11677950 11678000 59 98 14.5 12.5 13.5 4.1 153 chr2R 11677847 intron,exon Roc2 -,Tret1-2 + chr2R 11677924 intron,3` UTR Roc2 -,Tret1-2 + chr2R 11678000 intron,3` UTR Roc2 -,Tret1-2 + chr2R_59_11675001 chr2R_11675001 RAL-303_100b 1742 chr2R 11861970 11862022 chr2R 11862080 11862132 23 109 20.5 22.5 21.5 1.0 162 chr2R 11861970 3` UTR CG34230 + chr2R 11862051 intergenic CG34230 +,TwdlBeta - chr2R 11862132 intergenic CG34230 +,TwdlBeta - chr2R_23_11860001 chr2R_11860001 RAL-303_100b 1743 chr2R 11928666 11928702 chr2R 11928769 11928805 7 102 0.0 11.5 5.8 1.0 139 chr2R 11928666 intergenic not near genes chr2R 11928736 intergenic not near genes chr2R 11928805 intergenic CR44312 - chr2R_7_11925001 chr2R_11925001 RAL-303_100b 1744 chr2R 11928706 11928709 chr2R 11928768 11928812 6 95 0.0 11.5 5.8 0.9 106 chr2R 11928706 intergenic not near genes chr2R 11928759 intergenic CR44312 - chr2R 11928812 intergenic CR44312 - chr2R_6_11925001 chr2R_11925001 RAL-303_100b 1745 chr2R 11945463 11945496 chr2R 11945775 11945808 9 308 47.0 55.0 51.0 0.2 345 chr2R 11945463 intron CG13188 + chr2R 11945636 intron CG13188 + chr2R 11945808 intron CG13188 + chr2R_9_11945001 chr2R_11945001 RAL-303_100b 1746 chr2R 11945497 11945517 chr2R 11945774 11945793 9 295 44.0 56.0 50.0 0.2 296 chr2R 11945497 intron CG13188 + chr2R 11945645 intron CG13188 + chr2R 11945793 intron CG13188 + chr2R_9_11945001 chr2R_11945001 RAL-303_100b 1747 chr2R 11955353 11955378 chr2R 11955457 11955482 15 104 23.0 16.0 19.5 0.7 129 chr2R 11955353 intron CG13188 + chr2R 11955418 intron CG13188 + chr2R 11955482 intron CG13188 + chr2R_15_11955001 chr2R_11955001 RAL-303_100b 1748 chr2R 8518774 8518792 chr2R 12066144 12066206 10 3547390 57.0 64.5 60.8 0.2 3547432 chr2R 8518774 intron mtt - chr2R 10292490 intron CAP + chr2R 12066206 intron CG8888 - chr2R_10_10290001 chr2R_10290001 RAL-303_100b 1749 chr2R 12093929 12093980 chr2R 12094067 12094118 16 137 36.5 47.0 41.8 0.4 189 chr2R 12093929 intron jeb - chr2R 12094024 intron jeb - chr2R 12094118 intron jeb - chr2R_16_12090001 chr2R_12090001 RAL-303_100b 1750 chr2R 12096815 12096855 chr2R 12097292 12097332 11 477 18.0 52.0 35.0 0.3 517 chr2R 12096815 intron jeb - chr2R 12097074 intron jeb - chr2R 12097332 intron jeb - chr2R_11_12095001 chr2R_12095001 RAL-303_100b 1751 chr2R 12115715 12115867 chr2R 12115830 12115933 38 98 31.5 30.5 31.0 1.2 218 chr2R 12115715 intron jeb - chr2R 12115824 intron jeb - chr2R 12115933 intron jeb - chr2R_38_12115001 chr2R_12115001 RAL-303_100b 1752 chr2R 12120383 12120437 chr2R 12120486 12120526 37 101 43.5 39.5 41.5 0.9 143 chr2R 12120383 intergenic not near genes chr2R 12120454 intergenic not near genes chr2R 12120526 intergenic not near genes chr2R_37_12120001 chr2R_12120001 RAL-303_100b 1753 chr2R 12124805 12124826 chr2R 12124914 12124930 12 109 46.0 27.0 36.5 0.3 125 chr2R 12124805 intergenic not near genes chr2R 12124868 intergenic not near genes chr2R 12124930 intergenic not near genes chr2R_12_12120001 chr2R_12120001 RAL-303_100b 1754 chr2R 12124834 12124855 chr2R 12124912 12124958 8 104 38.5 26.5 32.5 0.2 124 chr2R 12124834 intergenic not near genes chr2R 12124896 intergenic not near genes chr2R 12124958 intergenic not near genes chr2R_8_12120001 chr2R_12120001 RAL-303_100b 1755 chr2R 12146446 12146501 chr2R 12147593 12147623 24 1137 103.5 86.5 95.0 0.2 1177 chr2R 12146446 intron,3` UTR Hen1 +,CG8878 - chr2R 12147034 intron,exon Hen1 +,CG8878 - chr2R 12147623 intron,exon Hen1 +,CG8878 - chr2R_24_12145001 chr2R_12145001 RAL-303_100b 1756 chr2R 12145916 12145970 chr2R 12148594 12148638 22 2671 113.0 97.5 105.2 0.2 2722 chr2R 12145916 exon Hen1 + chr2R 12147277 intron,intron Hen1 +,CG8878 - chr2R 12148638 intron,exon Hen1 +,CG8878 - chr2R_22_12145001 chr2R_12145001 RAL-303_100b 1757 chr2R 12185975 12186037 chr2R 12186095 12186152 88 115 13.5 22.0 17.8 4.7 177 chr2R 12185975 intron Cyp6g1 + chr2R 12186064 intron Cyp6g1 + chr2R 12186152 intron Cyp6g1 + chr2R_88_12185001 chr2R_12185001 RAL-303_100b 1758 chr2R 12185223 12185231 chr2R 12188123 12188131 6 2901 118.0 499.5 308.8 0.0 2908 chr2R 12185223 3` UTR,exon CG13175 +,CG33964 + chr2R 12186677 exon Cyp6g1 + chr2R 12188131 exon Cyp6g1 + chr2R_6_12185001 chr2R_12185001 RAL-303_100b 1759 chr2R 12185222 12185244 chr2R 12188132 12188144 10 2902 121.0 502.5 311.8 0.0 2922 chr2R 12185222 3` UTR,exon CG13175 +,CG33964 + chr2R 12186683 exon Cyp6g1 + chr2R 12188144 3` UTR Cyp6g1 + chr2R_10_12185001 chr2R_12185001 RAL-303_100b 1760 chr2R 12189389 12189409 chr2R 12189597 12189626 19 211 369.0 352.0 360.5 0.1 237 chr2R 12189389 exon Cyp6g2 - chr2R 12189508 exon Cyp6g2 - chr2R 12189626 exon Cyp6g2 - chr2R_19_12185001 chr2R_12185001 RAL-303_100b 1761 chr2R 12187475 12187483 chr2R 12190071 12190074 11 2592 299.0 356.0 327.5 0.0 2599 chr2R 12187475 exon Cyp6g1 + chr2R 12188774 exon Cyp6g2 - chr2R 12190074 exon Cyp6g2 - chr2R_11_12185001 chr2R_12185001 RAL-303_100b 1762 chr2R 12187474 12187489 chr2R 12190075 12190080 17 2594 318.0 346.0 332.0 0.1 2606 chr2R 12187474 exon Cyp6g1 + chr2R 12188777 exon Cyp6g2 - chr2R 12190080 exon Cyp6g2 - chr2R_17_12185001 chr2R_12185001 RAL-303_100b 1763 chr2R 12187473 12187501 chr2R 12190081 12190092 43 2596 348.0 336.5 342.2 0.1 2619 chr2R 12187473 exon Cyp6g1 + chr2R 12188782 exon Cyp6g2 - chr2R 12190092 exon Cyp6g2 - chr2R_43_12185001 chr2R_12185001 RAL-303_100b 1764 chr2R 12187471 12187523 chr2R 12190093 12190124 124 2604 405.0 311.0 358.0 0.3 2653 chr2R 12187471 exon Cyp6g1 + chr2R 12188798 exon Cyp6g2 - chr2R 12190124 exon Cyp6g2 - chr2R_124_12185001 chr2R_12185001 RAL-303_100b 1765 chr2R 12217552 12217603 chr2R 12217657 12217709 23 105 45.5 50.5 48.0 0.5 157 chr2R 12217552 intergenic not near genes chr2R 12217630 intergenic not near genes chr2R 12217709 intergenic not near genes chr2R_23_12215001 chr2R_12215001 RAL-303_100b 1766 chr2R 12236207 12236225 chr2R 12236323 12236341 12 114 48.5 42.5 45.5 0.3 134 chr2R 12236207 intergenic not near genes chr2R 12236274 intergenic not near genes chr2R 12236341 intergenic not near genes chr2R_12_12235001 chr2R_12235001 RAL-303_100b 1767 chr2R 12240739 12240757 chr2R 12240840 12240858 7 100 41.5 26.5 34.0 0.2 119 chr2R 12240739 exon CG13170 + chr2R 12240798 3` UTR CG13170 + chr2R 12240858 intergenic CG13170 +,CG43315 + chr2R_7_12240001 chr2R_12240001 RAL-303_100b 1768 chr2R 12244965 12244972 chr2R 12245069 12245076 5 104 35.0 14.5 24.8 0.2 111 chr2R 12244965 intergenic CG43244 - chr2R 12245020 intergenic CG43244 - chr2R 12245076 intergenic CG43244 - chr2R_5_12245001 chr2R_12245001 RAL-303_100b 1769 chr2R 12255693 12255747 chr2R 12255837 12255891 34 144 45.0 53.5 49.2 0.7 198 chr2R 12255693 3` UTR CG13168 + chr2R 12255792 intergenic CG13168 + chr2R 12255891 intergenic CG13168 + chr2R_34_12255001 chr2R_12255001 RAL-303_100b 1770 chr2R 12285363 12285403 chr2R 12285485 12285525 15 120 25.0 20.5 22.8 0.6 162 chr2R 12285363 intron CG42700 + chr2R 12285444 intron CG42700 + chr2R 12285525 intron CG42700 + chr2R_15_12285001 chr2R_12285001 RAL-303_100b 1771 chr2R 12301506 12301556 chr2R 12301787 12301840 25 283 33.0 52.0 42.5 0.6 334 chr2R 12301506 intron CG8850 - chr2R 12301673 intron CG8850 - chr2R 12301840 intron CG8850 - chr2R_25_12300001 chr2R_12300001 RAL-303_100b 1772 chr2R 12363357 12363401 chr2R 12363814 12363821 27 455 52.5 45.5 49.0 0.5 464 chr2R 12363357 intergenic CG30043 + chr2R 12363589 intergenic CG30043 + chr2R 12363821 intergenic not near genes chr2R_27_12360001 chr2R_12360001 RAL-303_100b 1773 chr2R 12361203 12361225 chr2R 12364892 12364914 4 3689 81.0 71.0 76.0 0.1 3711 chr2R 12361203 exon CG30043 + chr2R 12363058 3` UTR CG30043 + chr2R 12364914 intergenic not near genes chr2R_4_12360001 chr2R_12360001 RAL-303_100b 1774 chr2R 12481141 12481150 chr2R 12482954 12482979 roo 8 1822 13.5 28.0 20.8 0.4 1838 chr2R 12481141 exon Dh44-R2 + chr2R 12482060 intron Dh44-R2 + chr2R 12482979 intron Dh44-R2 + chr2R_8_12480001 chr2R_12480001 RAL-303_100b 1775 chr2R 12481153 12481168 chr2R 12482945 12482945 roo 12 1814 6.0 22.0 14.0 0.8 1792 chr2R 12481153 exon Dh44-R2 + chr2R 12482049 intron Dh44-R2 + chr2R 12482945 intron Dh44-R2 + chr2R_12_12480001 chr2R_12480001 RAL-303_100b 1776 chr2R 12501684 12501727 chr2R 12503860 12503886 Rt1c 28 2183 44.0 21.5 32.8 0.8 2202 chr2R 12501684 intron fdl - chr2R 12502785 intron fdl - chr2R 12503886 intron fdl - chr2R_28_12500001 chr2R_12500001 RAL-303_100b 1777 chr2R 12508071 12508098 chr2R 12512028 12512040 10 3954 22.0 50.0 36.0 0.3 3969 chr2R 12508071 3` UTR vis - chr2R 12510056 exon vis - chr2R 12512040 3` UTR achi - chr2R_10_12510001 chr2R_12510001 RAL-303_100b 1778 chr2R 12529880 12529929 chr2R 12529998 12530021 18 116 43.5 34.5 39.0 0.5 141 chr2R 12529880 intron fra + chr2R 12529950 intron fra + chr2R 12530021 intron fra + chr2R_18_12525001 chr2R_12525001 RAL-303_100b 1779 chr2R 12535977 12536034 chr2R 12536095 12536152 23 111 42.5 46.0 44.2 0.5 175 chr2R 12535977 intron fra + chr2R 12536064 intron fra + chr2R 12536152 intron fra + chr2R_23_12535001 chr2R_12535001 RAL-303_100b 1780 chr2R 12548493 12548550 chr2R 12548595 12548652 11 96 22.5 37.0 29.8 0.4 159 chr2R 12548493 intron fra + chr2R 12548572 intron fra + chr2R 12548652 intron fra + chr2R_11_12545001 chr2R_12545001 RAL-303_100b 1781 chr2R 12565544 12565568 chr2R 12565947 12565976 14 405 6.0 16.0 11.0 1.2 432 chr2R 12565544 intergenic not near genes chr2R 12565760 intergenic Cyp301a1 + chr2R 12565976 intergenic Cyp301a1 + chr2R_14_12565001 chr2R_12565001 RAL-303_100b 1782 chr2R 12565569 12565596 chr2R 12565943 12565970 21 395 4.5 12.5 8.5 2.2 401 chr2R 12565569 intergenic not near genes chr2R 12565770 intergenic Cyp301a1 + chr2R 12565970 intergenic Cyp301a1 + chr2R_21_12565001 chr2R_12565001 RAL-303_100b 1783 chr2R 12597942 12597968 chr2R 12598067 12598073 13 122 51.0 39.5 45.2 0.3 131 chr2R 12597942 intron Amph + chr2R 12598008 intron Amph + chr2R 12598073 intron Amph + chr2R_13_12595001 chr2R_12595001 RAL-303_100b 1784 chr2R 12597971 12597986 chr2R 12598061 12598095 6 116 43.0 39.5 41.2 0.1 124 chr2R 12597971 intron Amph + chr2R 12598033 intron Amph + chr2R 12598095 intron Amph + chr2R_6_12595001 chr2R_12595001 RAL-303_100b 1785 chr2R 12608354 12608386 chr2R 12608463 12608494 14 109 18.5 22.5 20.5 0.7 140 chr2R 12608354 intron Amph + chr2R 12608424 intron Amph + chr2R 12608494 intron Amph + chr2R_14_12605001 chr2R_12605001 RAL-303_100b 1786 chr2R 12627446 12627502 chr2R 12627574 12627619 8 121 33.5 41.5 37.5 0.2 173 chr2R 12627446 intron CG17760 + chr2R 12627532 intron CG17760 + chr2R 12627619 exon CG17760 + chr2R_8_12625001 chr2R_12625001 RAL-303_100b 1787 chr2R 12658149 12658166 chr2R 12658255 12658256 4 102 53.5 19.0 36.2 0.1 107 chr2R 12658149 exon CG8646 + chr2R 12658202 exon CG8646 + chr2R 12658256 intron CG8646 + chr2R_4_12655001 chr2R_12655001 RAL-303_100b 1788 chr2R 12664480 12664504 chr2R 22524386 22524387 6 9859902 45.5 60.0 52.8 0.1 9859907 chr2R 12664480 intron nemy - chr2R 17594434 intron lack + chr2R 22524387 intron px - chr2R_6_17590001 chr2R_17590001 RAL-303_100b 1789 chr2R 12670365 12670398 chr2R 12670497 12670515 15 130 20.0 5.0 12.5 1.1 150 chr2R 12670365 intergenic CG42708 -,nemy - chr2R 12670440 intergenic CG42708 -,nemy - chr2R 12670515 3` UTR CG42708 - chr2R_15_12670001 chr2R_12670001 RAL-303_100b 1790 chr2R 12706395 12706449 chr2R 12706512 12706560 35 112 41.0 39.0 40.0 0.9 165 chr2R 12706395 intron CG42663 + chr2R 12706478 intron CG42663 + chr2R 12706560 intron CG42663 + chr2R_35_12705001 chr2R_12705001 RAL-303_100b 1791 chr2R 12707516 12707547 chr2R 12715896 12715938 roo 31 8389 5.5 9.5 7.5 3.6 8422 chr2R 12707516 intron CG42663 + chr2R 12711727 intron CG42663 + chr2R 12715938 intron CG42663 + chr2R_31_12710001 chr2R_12710001 RAL-303_100b 1792 chr2R 12728856 12728901 chr2R 12728975 12729024 10 123 28.0 31.5 29.8 0.3 168 chr2R 12728856 intron CG42663 + chr2R 12728940 intron CG42663 + chr2R 12729024 intron CG42663 + chr2R_10_12725001 chr2R_12725001 RAL-303_100b 1793 chr2R 12774223 12774234 chr2R 12774333 12774336 6 107 43.0 37.0 40.0 0.1 113 chr2R 12774223 intergenic not near genes chr2R 12774280 intergenic not near genes chr2R 12774336 intergenic not near genes chr2R_6_12770001 chr2R_12770001 RAL-303_100b 1794 chr2R 12777806 12777827 chr2R 12777940 12777940 7 130 0.0 18.0 9.0 0.7 134 chr2R 12777806 5` UTR CR45266 + chr2R 12777873 5` UTR CR45266 + chr2R 12777940 5` UTR CR45266 + chr2R_7_12775001 chr2R_12775001 RAL-303_100b 1795 chr2R 12789272 12789326 chr2R 12797655 12797693 roo 40 8376 13.0 16.5 14.8 2.5 8421 chr2R 12789272 intron,3` UTR sca +,CR45137 - chr2R 12793482 intron,intron sca +,CR45137 - chr2R 12797693 intron,3` UTR sca +,CR45137 - chr2R_40_12790001 chr2R_12790001 RAL-303_100b 1796 chr2R 12808296 12808348 chr2R 12808411 12808468 22 115 51.0 55.5 53.2 0.4 172 chr2R 12808296 intergenic CG17580 + chr2R 12808382 intergenic not near genes chr2R 12808468 intergenic not near genes chr2R_22_12805001 chr2R_12805001 RAL-303_100b 1797 chr2R 12818346 12818352 chr2R 12818455 12818461 4 109 0.0 8.0 4.0 0.8 115 chr2R 12818346 intergenic not near genes chr2R 12818404 intergenic not near genes chr2R 12818461 intergenic not near genes chr2R_4_12815001 chr2R_12815001 RAL-303_100b 1798 chr2R 12819428 12819429 chr2R 12824522 12824523 jockey 4 5094 37.0 22.0 29.5 0.1 5095 chr2R 12819428 intergenic not near genes chr2R 12821976 intergenic not near genes chr2R 12824523 intergenic not near genes chr2R_4_12820001 chr2R_12820001 RAL-303_100b 1799 chr2R 12819430 12819479 chr2R 12824521 12824567 jockey 37 5086 13.5 21.0 17.2 2.0 5137 chr2R 12819430 intergenic not near genes chr2R 12821998 intergenic not near genes chr2R 12824567 intergenic not near genes chr2R_37_12820001 chr2R_12820001 RAL-303_100b 1800 chr2R 12836362 12836413 chr2R 12836474 12836525 41 109 39.0 41.0 40.0 1.0 163 chr2R 12836362 intergenic not near genes chr2R 12836444 intergenic not near genes chr2R 12836525 intergenic not near genes chr2R_41_12835001 chr2R_12835001 RAL-303_100b 1801 chr2R 12845388 12845438 chr2R 12845494 12845539 12 105 28.5 22.5 25.5 0.5 151 chr2R 12845388 intergenic CG17575 - chr2R 12845464 intergenic CG17575 - chr2R 12845539 intergenic CG17575 - chr2R_12_12845001 chr2R_12845001 RAL-303_100b 1802 chr2R 12897458 12897480 chr2R 12897574 12897596 24 116 13.0 13.0 13.0 1.7 138 chr2R 12897458 intron vg + chr2R 12897527 intron vg + chr2R 12897596 intron vg + chr2R_24_12895001 chr2R_12895001 RAL-303_100b 1803 chr2R 12915797 12915840 chr2R 12915917 12915959 24 112 41.0 43.5 42.2 0.6 162 chr2R 12915797 intergenic NAT1 + chr2R 12915878 intergenic NAT1 + chr2R 12915959 intergenic NAT1 + chr2R_24_12915001 chr2R_12915001 RAL-303_100b 1804 chr2R 12950105 12950139 chr2R 12950213 12950247 9 107 13.0 9.0 11.0 0.8 142 chr2R 12950105 intron CG44251 - chr2R 12950176 intron CG44251 - chr2R 12950247 intron CG44251 - chr2R_9_12950001 chr2R_12950001 RAL-303_100b 1805 chr2R 12972994 12973001 chr2R 12973091 12973108 7 103 23.5 38.0 30.8 0.2 114 chr2R 12972994 intron Psc - chr2R 12973051 intron Psc - chr2R 12973108 intron Psc - chr2R_7_12970001 chr2R_12970001 RAL-303_100b 1806 chr2R 12973002 12973015 chr2R 12973069 12973122 9 100 16.5 33.0 24.8 0.3 120 chr2R 12973002 intron Psc - chr2R 12973062 intron Psc - chr2R 12973122 intron Psc - chr2R_9_12970001 chr2R_12970001 RAL-303_100b 1807 chr2R 13027719 13027739 chr2R 13027823 13027837 11 103 33.0 32.5 32.8 0.3 118 chr2R 13027719 intergenic not near genes chr2R 13027778 intergenic not near genes chr2R 13027837 intergenic not near genes chr2R_11_13025001 chr2R_13025001 RAL-303_100b 1808 chr2R 13034675 13034681 chr2R 13034809 13034815 7 134 20.5 45.0 32.8 0.2 140 chr2R 13034675 intergenic not near genes chr2R 13034745 intergenic not near genes chr2R 13034815 intergenic not near genes chr2R_7_13030001 chr2R_13030001 RAL-303_100b 1809 chr2R 13043029 13043030 chr2R 13043149 13043152 5 122 12.0 5.5 8.8 0.5 123 chr2R 13043029 intergenic not near genes chr2R 13043090 intergenic not near genes chr2R 13043152 intergenic not near genes chr2R_5_13040001 chr2R_13040001 RAL-303_100b 1810 chr2R 13043031 13043063 chr2R 13043136 13043167 14 110 6.5 5.0 5.8 2.1 136 chr2R 13043031 intergenic not near genes chr2R 13043099 intergenic not near genes chr2R 13043167 intergenic not near genes chr2R_14_13040001 chr2R_13040001 RAL-303_100b 1811 chr2R 13107838 13107850 chr2R 13107952 13107964 10 113 37.5 12.0 24.8 0.4 126 chr2R 13107838 intergenic not near genes chr2R 13107901 intergenic not near genes chr2R 13107964 intergenic not near genes chr2R_10_13105001 chr2R_13105001 RAL-303_100b 1812 chr2R 13129165 13129220 chr2R 13129268 13129323 27 102 22.0 23.0 22.5 1.1 158 chr2R 13129165 intergenic CG3955 -,CG13326 - chr2R 13129244 intergenic CG3955 -,CG13326 - chr2R 13129323 intergenic CG13326 -,CG3955 - chr2R_27_13125001 chr2R_13125001 RAL-303_100b 1813 chr2R 13136817 13136831 chr2R 13141640 13141654 Doc 18 4822 38.0 18.5 28.2 0.6 4837 chr2R 13136817 exon Cap-G + chr2R 13139236 intron Cap-G + chr2R 13141654 intron Cap-G + chr2R_18_13135001 chr2R_13135001 RAL-303_100b 1814 chr2R 13136833 13136869 chr2R 13141632 13141682 Doc 33 4819 18.0 15.5 16.8 1.9 4849 chr2R 13136833 exon Cap-G + chr2R 13139258 intron Cap-G + chr2R 13141682 intron Cap-G + chr2R_33_13135001 chr2R_13135001 RAL-303_100b 1815 chr2R 13167409 13167440 chr2R 13167528 13167559 24 118 32.5 32.0 32.2 0.7 150 chr2R 13167409 intron GLaz - chr2R 13167484 intron GLaz - chr2R 13167559 intron GLaz - chr2R_24_13165001 chr2R_13165001 RAL-303_100b 1816 chr2R 13172069 13172121 chr2R 13172172 13172224 6 103 22.0 21.5 21.8 0.3 155 chr2R 13172069 intron AGBE + chr2R 13172146 intron AGBE + chr2R 13172224 intron AGBE + chr2R_6_13170001 chr2R_13170001 RAL-303_100b 1817 chr2R 13194835 13194852 chr2R 13194947 13194962 6 113 45.0 26.0 35.5 0.2 127 chr2R 13194835 intergenic not near genes chr2R 13194898 intergenic not near genes chr2R 13194962 intergenic not near genes chr2R_6_13190001 chr2R_13190001 RAL-303_100b 1818 chr2R 13218285 13218288 chr2R 13218393 13218396 4 108 55.5 26.5 41.0 0.1 111 chr2R 13218285 intron CG4630 - chr2R 13218340 intron CG4630 - chr2R 13218396 intron CG4630 - chr2R_4_13215001 chr2R_13215001 RAL-303_100b 1819 chr2R 13218289 13218317 chr2R 13218391 13218437 7 110 44.5 26.5 35.5 0.2 148 chr2R 13218289 intron CG4630 - chr2R 13218363 intron CG4630 - chr2R 13218437 intron CG4630 - chr2R_7_13215001 chr2R_13215001 RAL-303_100b 1820 chr2R 13220514 13220545 chr2R 13220617 13220627 5 98 32.5 43.0 37.8 0.1 113 chr2R 13220514 intron CG17059 + chr2R 13220570 intron CG17059 + chr2R 13220627 intron CG17059 + chr2R_5_13220001 chr2R_13220001 RAL-303_100b 1821 chr2R 13261149 13261171 chr2R 13261259 13261291 9 119 16.5 18.5 17.5 0.5 142 chr2R 13261149 intron CG42319 + chr2R 13261220 intron CG42319 + chr2R 13261291 intron CG42319 + chr2R_9_13260001 chr2R_13260001 RAL-303_100b 1822 chr2R 13309649 13309674 chr2R 13309792 13309817 9 143 42.0 31.0 36.5 0.2 168 chr2R 13309649 intergenic not near genes chr2R 13309733 intergenic not near genes chr2R 13309817 intergenic not near genes chr2R_9_13305001 chr2R_13305001 RAL-303_100b 1823 chr2R 13364683 13364732 chr2R 13364794 13364843 30 110 46.5 47.5 47.0 0.6 160 chr2R 13364683 intergenic not near genes chr2R 13364763 intergenic not near genes chr2R 13364843 intergenic not near genes chr2R_30_13360001 chr2R_13360001 RAL-303_100b 1824 chr2R 13369638 13369766 chr2R 13369761 13369867 6 103 37.5 36.5 37.0 0.2 229 chr2R 13369638 intergenic not near genes chr2R 13369752 intergenic not near genes chr2R 13369867 intergenic not near genes chr2R_6_13365001 chr2R_13365001 RAL-303_100b 1825 chr2R 13376632 13376639 chr2R 13376767 13376774 5 135 47.0 52.5 49.8 0.1 142 chr2R 13376632 intron CG10814 - chr2R 13376703 intron CG10814 - chr2R 13376774 intron CG10814 - chr2R_5_13375001 chr2R_13375001 RAL-303_100b 1826 chr2R 13403896 13403936 chr2R 13404006 13404046 21 107 33.0 34.0 33.5 0.6 150 chr2R 13403896 intergenic not near genes chr2R 13403971 intergenic not near genes chr2R 13404046 intergenic not near genes chr2R_21_13400001 chr2R_13400001 RAL-303_100b 1827 chr2R 13404861 13404870 chr2R 13404971 13404980 5 110 43.0 36.5 39.8 0.1 119 chr2R 13404861 intergenic not near genes chr2R 13404920 intergenic not near genes chr2R 13404980 intergenic not near genes chr2R_5_13400001 chr2R_13400001 RAL-303_100b 1828 chr2R 13404874 13404878 chr2R 13404970 13404988 4 105 43.0 36.5 39.8 0.1 114 chr2R 13404874 intergenic not near genes chr2R 13404931 intergenic not near genes chr2R 13404988 intergenic not near genes chr2R_4_13400001 chr2R_13400001 RAL-303_100b 1829 chr2R 13404884 13404914 chr2R 13404962 13405024 21 97 38.0 35.5 36.8 0.6 140 chr2R 13404884 intergenic not near genes chr2R 13404954 intergenic not near genes chr2R 13405024 intergenic not near genes chr2R_21_13400001 chr2R_13400001 RAL-303_100b 1830 chr2R 13431464 13431477 chr2R 13431568 13431581 7 104 24.5 0.5 12.5 0.5 117 chr2R 13431464 intron CG42321 - chr2R 13431522 intron CG42321 - chr2R 13431581 intron CG42321 - chr2R_7_13430001 chr2R_13430001 RAL-303_100b 1831 chr2R 13431478 13431504 chr2R 13431567 13431608 23 102 17.5 0.5 9.0 2.3 130 chr2R 13431478 intron CG42321 - chr2R 13431543 intron CG42321 - chr2R 13431608 intron CG42321 - chr2R_23_13430001 chr2R_13430001 RAL-303_100b 1832 chr2R 13439085 13439140 chr2R 13439225 13439279 38 136 6.5 11.0 8.8 3.9 194 chr2R 13439085 intergenic CG42321 -,cnn - chr2R 13439182 intergenic CG42321 -,cnn - chr2R 13439279 intergenic cnn -,CG42321 - chr2R_38_13435001 chr2R_13435001 RAL-303_100b 1833 chr2R 13532492 13532546 chr2R 13532633 13532656 32 138 4.5 12.5 8.5 3.4 164 chr2R 13532492 intron Vmat - chr2R 13532574 intron Vmat - chr2R 13532656 intron Vmat - chr2R_32_13530001 chr2R_13530001 RAL-303_100b 1834 chr2R 13544537 13544589 chr2R 13544638 13544690 10 101 26.0 36.5 31.2 0.3 153 chr2R 13544537 intron CG6145 - chr2R 13544614 intron CG6145 - chr2R 13544690 intron CG6145 - chr2R_10_13540001 chr2R_13540001 RAL-303_100b 1835 chr2R 13554742 13554773 chr2R 13554831 13554883 11 106 0.0 12.0 6.0 1.6 141 chr2R 13554742 intron Roe1 + chr2R 13554812 intron Roe1 + chr2R 13554883 intron Roe1 + chr2R_11_13550001 chr2R_13550001 RAL-303_100b 1836 chr2R 13566234 13566287 chr2R 13566339 13566353 13 100 34.0 31.5 32.8 0.4 119 chr2R 13566234 intergenic not near genes chr2R 13566294 intergenic not near genes chr2R 13566353 intergenic not near genes chr2R_13_13565001 chr2R_13565001 RAL-303_100b 1837 chr2R 13574379 13574423 chr2R 13574485 13574529 14 105 46.0 48.5 47.2 0.3 150 chr2R 13574379 intergenic CG42808 - chr2R 13574454 intergenic CG42808 -,CR44365 + chr2R 13574529 intergenic CG42808 -,CR44365 + chr2R_14_13570001 chr2R_13570001 RAL-303_100b 1838 chr2R 13580474 13580490 chr2R 13580849 13580865 jockey 6 374 14.5 14.5 14.5 0.4 391 chr2R 13580474 3` UTR CG6191 - chr2R 13580670 3` UTR,3` UTR CG6191 -,CG45088 - chr2R 13580865 3` UTR,3` UTR CG6191 -,CG45088 - chr2R_6_13580001 chr2R_13580001 RAL-303_100b 1839 chr2R 13580492 13580527 chr2R 13580846 13580889 jockey 44 371 6.0 13.5 9.8 4.1 397 chr2R 13580492 3` UTR CG6191 - chr2R 13580690 3` UTR,3` UTR CG6191 -,CG45088 - chr2R 13580889 3` UTR,3` UTR CG6191 -,CG45088 - chr2R_44_13580001 chr2R_13580001 RAL-303_100b 1840 chr2R 13599978 13599998 chr2R 13600104 13600117 14 123 60.5 24.5 42.5 0.3 139 chr2R 13599978 intergenic not near genes chr2R 13600048 intergenic not near genes chr2R 13600117 intergenic not near genes chr2R_14_13600001 chr2R_13600001 RAL-303_100b 1841 chr2R 13602643 13602674 chr2R 13602747 13602772 21 102 46.0 53.0 49.5 0.4 129 chr2R 13602643 intergenic not near genes chr2R 13602708 intergenic not near genes chr2R 13602772 intergenic not near genes chr2R_21_13600001 chr2R_13600001 RAL-303_100b 1842 chr2R 13649848 13649857 chr2R 13650118 13650121 4 266 95.5 67.5 81.5 0.0 273 chr2R 13649848 intron fas + chr2R 13649984 intron fas + chr2R 13650121 intron fas + chr2R_4_13645001 chr2R_13645001 RAL-303_100b 1843 chr2R 13652683 13652687 chr2R 13652787 13652791 4 104 48.0 33.5 40.8 0.1 108 chr2R 13652683 intron fas + chr2R 13652737 intron fas + chr2R 13652791 intron fas + chr2R_4_13650001 chr2R_13650001 RAL-303_100b 1844 chr2R 13652689 13652735 chr2R 13652785 13652838 16 101 37.5 33.0 35.2 0.4 149 chr2R 13652689 intron fas + chr2R 13652764 intron fas + chr2R 13652838 intron fas + chr2R_16_13650001 chr2R_13650001 RAL-303_100b 1845 chr2R 13653460 13653467 chr2R 13653741 13653753 8 281 68.5 41.5 55.0 0.1 293 chr2R 13653460 intron fas + chr2R 13653606 intron fas + chr2R 13653753 intron fas + chr2R_8_13650001 chr2R_13650001 RAL-303_100b 1846 chr2R 13653469 13653514 chr2R 13653740 13653779 31 280 53.5 41.5 47.5 0.6 310 chr2R 13653469 intron fas + chr2R 13653624 intron fas + chr2R 13653779 intron fas + chr2R_31_13650001 chr2R_13650001 RAL-303_100b 1847 chr2R 13704237 13704249 chr2R 13704352 13704364 7 114 42.0 37.5 39.8 0.2 127 chr2R 13704237 intron fas + chr2R 13704300 intron fas + chr2R 13704364 intron fas + chr2R_7_13700001 chr2R_13700001 RAL-303_100b 1848 chr2R 13704255 13704281 chr2R 13704351 13704391 15 111 37.5 37.0 37.2 0.4 136 chr2R 13704255 intron fas + chr2R 13704323 intron fas + chr2R 13704391 intron fas + chr2R_15_13700001 chr2R_13700001 RAL-303_100b 1849 chr2R 13709807 13709851 chr2R 13709939 13709969 25 121 7.5 4.5 6.0 3.6 162 chr2R 13709807 intron fas + chr2R 13709888 intron fas + chr2R 13709969 intron fas + chr2R_25_13705001 chr2R_13705001 RAL-303_100b 1850 chr2R 13721179 13721229 chr2R 13721287 13721337 43 101 22.0 16.0 19.0 2.1 158 chr2R 13721179 intron fas + chr2R 13721258 intron fas + chr2R 13721337 intron fas + chr2R_43_13720001 chr2R_13720001 RAL-303_100b 1851 chr2R 13728106 13728132 chr2R 13735791 13735817 opus 10 7684 20.5 12.0 16.2 0.6 7711 chr2R 13728106 intron fas + chr2R 13731962 intron fas + chr2R 13735817 intron fas + chr2R_10_13730001 chr2R_13730001 RAL-303_100b 1852 chr2R 13738904 13738939 chr2R 13739020 13739056 14 116 6.5 16.0 11.2 1.1 152 chr2R 13738904 intron fas + chr2R 13738980 intron fas + chr2R 13739056 intron fas + chr2R_14_13735001 chr2R_13735001 RAL-303_100b 1853 chr2R 13768956 13769010 chr2R 13769079 13769114 44 119 12.0 19.5 15.8 2.6 158 chr2R 13768956 intergenic not near genes chr2R 13769035 intergenic not near genes chr2R 13769114 intergenic not near genes chr2R_44_13765001 chr2R_13765001 RAL-303_100b 1854 chr2R 13790302 13790324 chr2R 13790403 13790419 14 100 32.5 0.0 16.2 0.8 117 chr2R 13790302 intergenic not near genes chr2R 13790360 intergenic not near genes chr2R 13790419 intergenic not near genes chr2R_14_13790001 chr2R_13790001 RAL-303_100b 1855 chr2R 13793120 13793161 chr2R 13793223 13793262 40 97 14.5 15.5 15.0 2.5 142 chr2R 13793120 intergenic not near genes chr2R 13793191 intergenic not near genes chr2R 13793262 intergenic not near genes chr2R_40_13790001 chr2R_13790001 RAL-303_100b 1856 chr2R 13817635 13817690 chr2R 13817739 13817797 17 105 7.5 0.5 4.0 3.4 162 chr2R 13817635 intron stj + chr2R 13817716 intron stj + chr2R 13817797 intron stj + chr2R_17_13815001 chr2R_13815001 RAL-303_100b 1857 chr2R 13822723 13822766 chr2R 13822824 13822846 7 94 38.0 36.5 37.2 0.2 123 chr2R 13822723 intron fl(2)d - chr2R 13822784 intron fl(2)d - chr2R 13822846 intron fl(2)d - chr2R_7_13820001 chr2R_13820001 RAL-303_100b 1858 chr2R 13827519 13827571 chr2R 13827715 13827769 18 196 40.0 36.5 38.2 0.5 250 chr2R 13827519 intron CG6329 + chr2R 13827644 intron CG6329 + chr2R 13827769 intron CG6329 + chr2R_18_13825001 chr2R_13825001 RAL-303_100b 1859 chr2R 13854925 13854979 chr2R 13855235 13855289 35 308 33.0 40.0 36.5 0.9 364 chr2R 13854925 intron,intron CG6553 -,CR44367 + chr2R 13855107 exon,5` UTR CG6553 -,CR44367 + chr2R 13855289 exon,5` UTR CG6553 -,CR44367 + chr2R_35_13855001 chr2R_13855001 RAL-303_100b 1860 chr2R 13888735 13888792 chr2R 13888837 13888912 14 106 42.0 41.0 41.5 0.3 177 chr2R 13888735 intron shot - chr2R 13888824 intron shot - chr2R 13888912 intron shot - chr2R_14_13885001 chr2R_13885001 RAL-303_100b 1861 chr2R 13905582 13905606 chr2R 13907589 13907613 Rt1a 18 2006 34.0 22.5 28.2 0.6 2031 chr2R 13905582 intron shot - chr2R 13906598 intron shot - chr2R 13907613 intron shot - chr2R_18_13905001 chr2R_13905001 RAL-303_100b 1862 chr2R 13905607 13905638 chr2R 13907581 13907585 Rt1a 26 1991 14.5 17.5 16.0 1.5 1978 chr2R 13905607 intron shot - chr2R 13906596 intron shot - chr2R 13907585 intron shot - chr2R_26_13905001 chr2R_13905001 RAL-303_100b 1863 chr2R 13912343 13912396 chr2R 13912473 13912526 45 128 36.5 40.5 38.5 1.1 183 chr2R 13912343 intron shot - chr2R 13912434 intron shot - chr2R 13912526 intron shot - chr2R_45_13910001 chr2R_13910001 RAL-303_100b 1864 chr2R 13925822 13925893 chr2R 13926023 13926072 74 189 8.5 13.5 11.0 6.2 250 chr2R 13925822 intron shot - chr2R 13925947 intron shot - chr2R 13926072 intron shot - chr2R_74_13925001 chr2R_13925001 RAL-303_100b 1865 chr2R 13986854 13986910 chr2R 13986968 13987024 38 114 30.5 28.5 29.5 1.2 170 chr2R 13986854 intron RN-tre - chr2R 13986939 intron RN-tre - chr2R 13987024 intron RN-tre - chr2R_38_13985001 chr2R_13985001 RAL-303_100b 1866 chr2R 14000203 14000260 chr2R 14000456 14000513 34 252 36.5 28.5 32.5 1.0 310 chr2R 14000203 intron mam + chr2R 14000358 intron mam + chr2R 14000513 intron mam + chr2R_34_14000001 chr2R_14000001 RAL-303_100b 1867 chr2R 14018136 14018188 chr2R 14018245 14018296 23 108 33.5 33.5 33.5 0.7 160 chr2R 14018136 intron mam + chr2R 14018216 intron mam + chr2R 14018296 intron mam + chr2R_23_14015001 chr2R_14015001 RAL-303_100b 1868 chr2R 14029582 14029631 chr2R 14029765 14029805 21 181 44.5 41.5 43.0 0.5 223 chr2R 14029582 intron mam + chr2R 14029694 intron mam + chr2R 14029805 intron mam + chr2R_21_14025001 chr2R_14025001 RAL-303_100b 1869 chr2R 14036492 14036529 chr2R 14036734 14036776 22 244 18.0 35.0 26.5 0.8 284 chr2R 14036492 intron mam + chr2R 14036634 intron mam + chr2R 14036776 intron mam + chr2R_22_14035001 chr2R_14035001 RAL-303_100b 1870 chr2R 14037237 14037297 chr2R 14037345 14037405 16 106 1.0 14.0 7.5 1.9 168 chr2R 14037237 intron mam + chr2R 14037321 intron mam + chr2R 14037405 intron mam + chr2R_16_14035001 chr2R_14035001 RAL-303_100b 1871 chr2R 14086652 14086664 chr2R 14086752 14086768 13 103 41.0 59.5 50.2 0.3 116 chr2R 14086652 intron Prosap - chr2R 14086710 intron Prosap - chr2R 14086768 intron Prosap - chr2R_13_14085001 chr2R_14085001 RAL-303_100b 1872 chr2R 14093408 14093423 chr2R 14109585 14109597 11 16176 33.0 5.0 19.0 0.6 16189 chr2R 14093408 intron Prosap - chr2R 14101502 intron Prosap - chr2R 14109597 intron Prosap - chr2R_11_14100001 chr2R_14100001 RAL-303_100b 1873 chr2R 14141930 14141948 chr2R 14142060 14142078 7 130 39.5 34.5 37.0 0.2 148 chr2R 14141930 intergenic not near genes chr2R 14142004 intergenic not near genes chr2R 14142078 intergenic not near genes chr2R_7_14140001 chr2R_14140001 RAL-303_100b 1874 chr2R 14142420 14142458 chr2R 14142535 14142573 18 114 51.5 41.0 46.2 0.4 153 chr2R 14142420 intergenic not near genes chr2R 14142496 intergenic not near genes chr2R 14142573 intergenic not near genes chr2R_18_14140001 chr2R_14140001 RAL-303_100b 1875 chr2R 14142459 14142473 chr2R 14142533 14142588 11 108 48.0 40.5 44.2 0.2 129 chr2R 14142459 intergenic not near genes chr2R 14142524 intergenic not near genes chr2R 14142588 intergenic not near genes chr2R_11_14140001 chr2R_14140001 RAL-303_100b 1876 chr2R 14168343 14168396 chr2R 14168457 14168499 17 111 37.5 32.0 34.8 0.5 156 chr2R 14168343 intergenic CG18327 +,CG18324 +,CR44368 - chr2R 14168421 intergenic CG18327 +,CG18324 +,CR44368 - chr2R 14168499 intergenic CG18327 +,CG18324 +,CR44368 - chr2R_17_14165001 chr2R_14165001 RAL-303_100b 1877 chr2R 14181854 14181856 chr2R 15578508 15578510 4 1396654 61.5 27.5 44.5 0.1 1396656 chr2R 14181854 3` UTR cg + chr2R 14880182 intron Cyp6a9 - chr2R 15578510 intergenic not near genes chr2R_4_14880001 chr2R_14880001 RAL-303_100b 1878 chr2R 14252385 14252428 chr2R 14252495 14252541 15 111 35.5 29.0 32.2 0.5 156 chr2R 14252385 exon Mdr50 + chr2R 14252463 3` UTR Mdr50 + chr2R 14252541 3` UTR Mdr50 + chr2R_15_14250001 chr2R_14250001 RAL-303_100b 1879 chr2R 14283422 14283441 chr2R 14283917 14283936 9 494 40.5 45.0 42.8 0.2 514 chr2R 14283422 intron Ih + chr2R 14283679 intron Ih + chr2R 14283936 intron Ih + chr2R_9_14280001 chr2R_14280001 RAL-303_100b 1880 chr2R 14285031 14285051 chr2R 14285139 14285168 25 114 7.0 14.5 10.8 2.1 137 chr2R 14285031 intron Ih + chr2R 14285100 intron Ih + chr2R 14285168 intron Ih + chr2R_25_14285001 chr2R_14285001 RAL-303_100b 1881 chr2R 14342194 14342225 chr2R 14342295 14342320 9 100 23.0 26.0 24.5 0.4 126 chr2R 14342194 intron Shroom + chr2R 14342257 intron Shroom + chr2R 14342320 intron Shroom + chr2R_9_14340001 chr2R_14340001 RAL-303_100b 1882 chr2R 14342239 14342245 chr2R 14342294 14342347 4 90 20.5 25.0 22.8 0.2 108 chr2R 14342239 intron Shroom + chr2R 14342293 intron Shroom + chr2R 14342347 intron Shroom + chr2R_4_14340001 chr2R_14340001 RAL-303_100b 1883 chr2R 14352674 14352720 chr2R 14352788 14352839 26 116 48.0 38.0 43.0 0.6 165 chr2R 14352674 exon CG8613 + chr2R 14352756 intron CG8613 + chr2R 14352839 intron CG8613 + chr2R_26_14350001 chr2R_14350001 RAL-303_100b 1884 chr2R 14357546 14357736 chr2R 14357657 14357899 38 124 42.0 40.0 41.0 0.9 353 chr2R 14357546 intergenic CG8617 -,Arc1 - chr2R 14357722 intergenic Arc1 -,CG8617 - chr2R 14357899 intergenic Arc1 - chr2R_38_14355001 chr2R_14355001 RAL-303_100b 1885 chr2R 14373475 14373526 chr2R 14373587 14373638 17 103 53.0 51.5 52.2 0.3 163 chr2R 14373475 exon Obp50d + chr2R 14373556 exon Obp50d + chr2R 14373638 exon Obp50d + chr2R_17_14370001 chr2R_14370001 RAL-303_100b 1886 chr2R 14386407 14386466 chr2R 14386519 14386576 34 108 32.0 42.0 37.0 0.9 169 chr2R 14386407 intergenic not near genes chr2R 14386492 intergenic not near genes chr2R 14386576 intergenic not near genes chr2R_34_14385001 chr2R_14385001 RAL-303_100b 1887 chr2R 14393755 14393810 chr2R 14393881 14393931 40 122 54.0 52.5 53.2 0.7 176 chr2R 14393755 intergenic not near genes chr2R 14393843 intergenic not near genes chr2R 14393931 intergenic not near genes chr2R_40_14390001 chr2R_14390001 RAL-303_100b 1888 chr2R 14394202 14394234 chr2R 14399016 14399028 Doc 20 4812 28.0 8.0 18.0 1.1 4826 chr2R 14394202 intergenic not near genes chr2R 14396615 intergenic not near genes chr2R 14399028 intergenic not near genes chr2R_20_14395001 chr2R_14395001 RAL-303_100b 1889 chr2R 14438820 14438830 chr2R 14438924 14438939 6 106 59.0 44.0 51.5 0.1 119 chr2R 14438820 intron Oaz + chr2R 14438880 intron Oaz + chr2R 14438939 intron Oaz + chr2R_6_14435001 chr2R_14435001 RAL-303_100b 1890 chr2R 14438833 14438849 chr2R 14438921 14438958 8 106 58.0 43.0 50.5 0.2 125 chr2R 14438833 intron Oaz + chr2R 14438896 intron Oaz + chr2R 14438958 intron Oaz + chr2R_8_14435001 chr2R_14435001 RAL-303_100b 1891 chr2R 14449823 14449874 chr2R 14449931 14449971 13 98 38.5 31.5 35.0 0.4 148 chr2R 14449823 intron Oaz + chr2R 14449897 intron Oaz + chr2R 14449971 intron Oaz + chr2R_13_14445001 chr2R_14445001 RAL-303_100b 1892 chr2R 14455550 14455607 chr2R 14455681 14455737 14 130 35.5 37.5 36.5 0.4 187 chr2R 14455550 intron Oaz + chr2R 14455644 intron Oaz + chr2R 14455737 intron Oaz + chr2R_14_14455001 chr2R_14455001 RAL-303_100b 1893 chr2R 14467272 14467326 chr2R 14476443 14476501 roo 70 9175 8.0 13.0 10.5 6.1 9229 chr2R 14467272 intergenic not near genes chr2R 14471886 intergenic not near genes chr2R 14476501 5` UTR CR44462 + chr2R_70_14470001 chr2R_14470001 RAL-303_100b 1894 chr2R 14478949 14478983 chr2R 14479056 14479085 7 106 8.5 15.0 11.8 0.5 136 chr2R 14478949 intergenic not near genes chr2R 14479017 intergenic not near genes chr2R 14479085 intergenic not near genes chr2R_7_14475001 chr2R_14475001 RAL-303_100b 1895 chr2R 14489194 14489252 chr2R 14489313 14489359 21 118 36.0 29.5 32.8 0.6 165 chr2R 14489194 intron L + chr2R 14489276 intron L + chr2R 14489359 intron L + chr2R_21_14485001 chr2R_14485001 RAL-303_100b 1896 chr2R 14497362 14497413 chr2R 14498553 14498604 1360 37 1187 8.0 14.0 11.0 3.1 1242 chr2R 14497362 3` UTR Cpsf160 - chr2R 14497983 intron Cpsf160 - chr2R 14498604 3` UTR Cpsf160 - chr2R_37_14495001 chr2R_14495001 RAL-303_100b 1897 chr2R 14514458 14514499 chr2R 14514579 14514617 16 121 13.5 11.5 12.5 1.2 159 chr2R 14514458 intron,intron Cpr51A -,CG30197 + chr2R 14514538 intron,intron Cpr51A -,CG30197 + chr2R 14514617 intron,intron Cpr51A -,CG30197 + chr2R_16_14510001 chr2R_14510001 RAL-303_100b 1898 chr2R 14530341 14530379 chr2R 14530455 14530493 13 107 42.0 34.0 38.0 0.3 152 chr2R 14530341 intron ttv + chr2R 14530417 intron ttv + chr2R 14530493 intron ttv + chr2R_13_14530001 chr2R_14530001 RAL-303_100b 1899 chr2R 14538933 14538987 chr2R 14539034 14539071 21 97 26.5 29.5 28.0 0.7 138 chr2R 14538933 intron ttv + chr2R 14539002 intron ttv + chr2R 14539071 intron ttv + chr2R_21_14535001 chr2R_14535001 RAL-303_100b 1900 chr2R 14541209 14541257 chr2R 14541481 14541539 13 281 43.0 43.5 43.2 0.3 330 chr2R 14541209 intron ttv + chr2R 14541374 intron ttv + chr2R 14541539 intron ttv + chr2R_13_14540001 chr2R_14540001 RAL-303_100b 1901 chr2R 14542732 14542792 chr2R 14542854 14542895 32 117 41.0 38.0 39.5 0.8 163 chr2R 14542732 intron ttv + chr2R 14542814 intron ttv + chr2R 14542895 intron ttv + chr2R_32_14540001 chr2R_14540001 RAL-303_100b 1902 chr2R 14550508 14550548 chr2R 14550612 14550652 17 102 20.0 30.5 25.2 0.6 144 chr2R 14550508 intron ttv + chr2R 14550580 intron ttv + chr2R 14550652 intron ttv + chr2R_17_14550001 chr2R_14550001 RAL-303_100b 1903 chr2R 14565536 14565589 chr2R 14565638 14565691 29 102 8.0 8.5 8.2 3.2 155 chr2R 14565536 intron ttv + chr2R 14565614 intron ttv + chr2R 14565691 intron ttv + chr2R_29_14565001 chr2R_14565001 RAL-303_100b 1904 chr2R 14566421 14566474 chr2R 14566533 14566579 53 111 14.5 14.0 14.2 3.5 158 chr2R 14566421 intron ttv + chr2R 14566500 intron ttv + chr2R 14566579 intron ttv + chr2R_53_14565001 chr2R_14565001 RAL-303_100b 1905 chr2R 14623876 14623889 chr2R 14623997 14624010 4 121 26.0 46.0 36.0 0.1 134 chr2R 14623876 intron Uhg5 + chr2R 14623943 5` UTR Uhg5 + chr2R 14624010 intron,5` UTR Uhg5 +,snoRNA:Me28S-G2703c + chr2R_4_14620001 chr2R_14620001 RAL-303_100b 1906 chr2R 14634264 14634312 chr2R 14634372 14634425 29 110 50.0 47.5 48.8 0.6 161 chr2R 14634264 intergenic not near genes chr2R 14634344 intergenic not near genes chr2R 14634425 intergenic not near genes chr2R_29_14630001 chr2R_14630001 RAL-303_100b 1907 chr2R 14653876 14653926 chr2R 14654001 14654051 35 118 46.0 51.0 48.5 0.7 175 chr2R 14653876 intergenic not near genes chr2R 14653964 intergenic not near genes chr2R 14654051 intergenic not near genes chr2R_35_14650001 chr2R_14650001 RAL-303_100b 1908 chr2R 14712635 14712672 chr2R 14712779 14712816 10 141 10.0 19.5 14.8 0.6 181 chr2R 14712635 intron mspo - chr2R 14712726 intron mspo - chr2R 14712816 exon mspo - chr2R_10_14710001 chr2R_14710001 RAL-303_100b 1909 chr2R 14722286 14722302 chr2R 14722415 14722431 12 128 21.5 34.5 28.0 0.4 145 chr2R 14722286 intergenic not near genes chr2R 14722358 intergenic not near genes chr2R 14722431 intergenic not near genes chr2R_12_14720001 chr2R_14720001 RAL-303_100b 1910 chr2R 14733378 14733424 chr2R 14733486 14733537 18 105 45.0 33.5 39.2 0.4 159 chr2R 14733378 intergenic not near genes chr2R 14733458 intergenic not near genes chr2R 14733537 intergenic not near genes chr2R_18_14730001 chr2R_14730001 RAL-303_100b 1911 chr2R 14766718 14766770 chr2R 14766827 14766879 23 108 37.0 43.0 40.0 0.6 161 chr2R 14766718 intron Spred - chr2R 14766798 intron Spred - chr2R 14766879 intron Spred - chr2R_23_14765001 chr2R_14765001 RAL-303_100b 1912 chr2R 14772748 14772804 chr2R 14772872 14772918 20 122 40.0 39.0 39.5 0.5 170 chr2R 14772748 3` UTR kn - chr2R 14772833 3` UTR kn - chr2R 14772918 3` UTR kn - chr2R_20_14770001 chr2R_14770001 RAL-303_100b 1913 chr2R 14786024 14786061 chr2R 14786142 14786179 14 114 0.0 24.0 12.0 1.1 155 chr2R 14786024 intron kn - chr2R 14786102 intron kn - chr2R 14786179 intron kn - chr2R_14_14785001 chr2R_14785001 RAL-303_100b 1914 chr2R 14796336 14796344 chr2R 14796456 14796466 5 122 7.0 13.0 10.0 0.5 130 chr2R 14796336 intron kn - chr2R 14796401 intron kn - chr2R 14796466 intron kn - chr2R_5_14795001 chr2R_14795001 RAL-303_100b 1915 chr2R 14796346 14796358 chr2R 14796453 14796479 4 117 6.0 11.5 8.8 0.4 133 chr2R 14796346 intron kn - chr2R 14796412 intron kn - chr2R 14796479 intron kn - chr2R_4_14795001 chr2R_14795001 RAL-303_100b 1916 chr2R 14796359 14796552 chr2R 14796451 14796658 4 106 32.0 11.0 21.5 0.2 299 chr2R 14796359 intron kn - chr2R 14796508 intron kn - chr2R 14796658 intron kn - chr2R_4_14795001 chr2R_14795001 RAL-303_100b 1917 chr2R 14797323 14797361 chr2R 14797450 14797503 21 133 37.5 40.0 38.8 0.5 180 chr2R 14797323 intron kn - chr2R 14797413 intron kn - chr2R 14797503 intron kn - chr2R_21_14795001 chr2R_14795001 RAL-303_100b 1918 chr2R 14799881 14799897 chr2R 14799943 14799998 7 93 33.5 38.5 36.0 0.2 117 chr2R 14799881 intron kn - chr2R 14799940 intron kn - chr2R 14799998 intron kn - chr2R_7_14795001 chr2R_14795001 RAL-303_100b 1919 chr2R 14803454 14803506 chr2R 14803559 14803611 18 105 40.0 45.5 42.8 0.4 157 chr2R 14803454 intron kn - chr2R 14803532 intron kn - chr2R 14803611 intron kn - chr2R_18_14800001 chr2R_14800001 RAL-303_100b 1920 chr2R 14816082 14816138 chr2R 14816202 14816259 36 116 55.0 49.0 52.0 0.7 177 chr2R 14816082 intergenic not near genes chr2R 14816170 intergenic not near genes chr2R 14816259 intergenic not near genes chr2R_36_14815001 chr2R_14815001 RAL-303_100b 1921 chr2R 14842366 14842394 chr2R 14842487 14842512 24 120 15.5 7.5 11.5 1.9 146 chr2R 14842366 intergenic NaPi-T - chr2R 14842439 intergenic NaPi-T - chr2R 14842512 intergenic NaPi-T - chr2R_24_14840001 chr2R_14840001 RAL-303_100b 1922 chr2R 14873664 14873720 chr2R 14875207 14875263 26 1542 42.0 1.0 21.5 1.2 1599 chr2R 14873664 intergenic Cyp6a22 +,Cyp6a17 + chr2R 14874464 exon Cyp6a17 + chr2R 14875263 exon Cyp6a17 + chr2R_26_14870001 chr2R_14870001 RAL-303_100b 1923 chr2R 14875220 14875256 chr2R 14875657 14875693 17 436 1.5 11.0 6.2 2.4 473 chr2R 14875220 exon Cyp6a17 + chr2R 14875456 exon Cyp6a17 + chr2R 14875693 3` UTR Cyp6a17 + chr2R_17_14875001 chr2R_14875001 RAL-303_100b 1924 chr2R 14880182 14880231 chr2R 14885797 14885842 5 5612 88.0 63.0 75.5 0.1 5660 chr2R 14880182 intron Cyp6a9 - chr2R 14883012 exon Cyp6a20 + chr2R 14885842 exon Cyp6a21 - chr2R_5_14880001 chr2R_14880001 RAL-303_100b 1925 chr2R 14889188 14889235 chr2R 14897821 14897827 Max-element 28 8630 18.5 0.0 9.2 2.7 8639 chr2R 14889188 intergenic Cyp6a8 - chr2R 14893508 intergenic not near genes chr2R 14897827 intergenic not near genes chr2R_28_14890001 chr2R_14890001 RAL-303_100b 1926 chr2R 14911678 14911683 chr2R 14911826 14911831 12 148 38.5 17.0 27.8 0.4 153 chr2R 14911678 intron CG10249 - chr2R 14911754 intron CG10249 - chr2R 14911831 intron CG10249 - chr2R_12_14910001 chr2R_14910001 RAL-303_100b 1927 chr2R 14911686 14911728 chr2R 14911825 14911876 52 147 11.5 17.0 14.2 3.4 190 chr2R 14911686 intron CG10249 - chr2R 14911781 intron CG10249 - chr2R 14911876 intron CG10249 - chr2R_52_14910001 chr2R_14910001 RAL-303_100b 1928 chr2R 14916529 14916558 chr2R 14916634 14916663 14 105 28.5 38.0 33.2 0.4 134 chr2R 14916529 intron CG10249 - chr2R 14916596 intron CG10249 - chr2R 14916663 intron CG10249 - chr2R_14_14915001 chr2R_14915001 RAL-303_100b 1929 chr2R 14917219 14917241 chr2R 14917335 14917356 9 116 49.5 35.5 42.5 0.2 137 chr2R 14917219 intron CG10249 - chr2R 14917288 intron CG10249 - chr2R 14917356 intron CG10249 - chr2R_9_14915001 chr2R_14915001 RAL-303_100b 1930 chr2R 14917247 14917264 chr2R 14917331 14917354 9 108 38.5 33.0 35.8 0.2 107 chr2R 14917247 intron CG10249 - chr2R 14917300 intron CG10249 - chr2R 14917354 intron CG10249 - chr2R_9_14915001 chr2R_14915001 RAL-303_100b 1931 chr2R 14919136 14919177 chr2R 14919270 14919310 9 134 3.0 1.0 2.0 3.0 174 chr2R 14919136 intron CG10249 - chr2R 14919223 intron CG10249 - chr2R 14919310 intron CG10249 - chr2R_9_14915001 chr2R_14915001 RAL-303_100b 1932 chr2R 14922121 14922173 chr2R 14922217 14922274 24 99 37.0 36.0 36.5 0.6 153 chr2R 14922121 intron CG10249 - chr2R 14922198 intron CG10249 - chr2R 14922274 intron CG10249 - chr2R_24_14920001 chr2R_14920001 RAL-303_100b 1933 chr2R 14930836 14930846 chr2R 14930949 14930964 7 117 1.0 6.0 3.5 1.6 128 chr2R 14930836 intron CG10253 - chr2R 14930900 intron CG10253 - chr2R 14930964 intron CG10253 - chr2R_7_14930001 chr2R_14930001 RAL-303_100b 1934 chr2R 14934436 14934488 chr2R 14934549 14934605 14 112 34.5 29.0 31.8 0.4 169 chr2R 14934436 intron CG10253 - chr2R 14934520 intron CG10253 - chr2R 14934605 intron CG10253 - chr2R_14_14930001 chr2R_14930001 RAL-303_100b 1935 chr2R 14954722 14954785 chr2R 14954823 14954886 23 100 15.5 16.5 16.0 1.4 164 chr2R 14954722 intron aPKC - chr2R 14954804 intron aPKC - chr2R 14954886 intron aPKC - chr2R_23_14950001 chr2R_14950001 RAL-303_100b 1936 chr2R 14955643 14955702 chr2R 14955757 14955816 31 113 10.0 8.0 9.0 3.1 173 chr2R 14955643 intron aPKC - chr2R 14955730 intron aPKC - chr2R 14955816 intron aPKC - chr2R_31_14955001 chr2R_14955001 RAL-303_100b 1937 chr2R 14957641 14957668 chr2R 14957761 14957788 16 120 5.5 4.0 4.8 2.8 147 chr2R 14957641 intron aPKC - chr2R 14957714 intron aPKC - chr2R 14957788 intron aPKC - chr2R_16_14955001 chr2R_14955001 RAL-303_100b 1938 chr2R 14998490 14998554 chr2R 14998655 14998669 13 142 7.0 8.5 7.8 1.5 179 chr2R 14998490 intergenic not near genes chr2R 14998580 intergenic not near genes chr2R 14998669 intergenic not near genes chr2R_13_14995001 chr2R_14995001 RAL-303_100b 1939 chr2R 15004692 15004761 chr2R 15005052 15005053 jockey 45 352 10.5 9.5 10.0 4.1 361 chr2R 15004692 intergenic not near genes chr2R 15004872 intergenic not near genes chr2R 15005053 intergenic not near genes chr2R_45_15000001 chr2R_15000001 RAL-303_100b 1940 chr2R 15015433 15015487 chr2R 15022880 15022936 mdg1 57 7447 18.0 18.0 18.0 3.0 7503 chr2R 15015433 intron hbs + chr2R 15019184 intron hbs + chr2R 15022936 intron hbs + chr2R_57_15015001 chr2R_15015001 RAL-303_100b 1941 chr2R 15051059 15051109 chr2R 15051166 15051183 20 104 28.5 29.5 29.0 0.7 124 chr2R 15051059 intergenic not near genes chr2R 15051121 intergenic not near genes chr2R 15051183 intergenic not near genes chr2R_20_15050001 chr2R_15050001 RAL-303_100b 1942 chr2R 15065589 15065647 chr2R 15065693 15065743 24 97 36.5 35.0 35.8 0.7 154 chr2R 15065589 intergenic not near genes chr2R 15065666 intergenic not near genes chr2R 15065743 intergenic not near genes chr2R_24_15065001 chr2R_15065001 RAL-303_100b 1943 chr2R 15073098 15073120 chr2R 15073206 15073228 17 108 39.0 27.0 33.0 0.5 130 chr2R 15073098 intergenic not near genes chr2R 15073163 intergenic not near genes chr2R 15073228 intergenic not near genes chr2R_17_15070001 chr2R_15070001 RAL-303_100b 1944 chr2R 15084954 15084995 chr2R 15092028 15092069 297 29 7071 21.0 14.5 17.8 1.5 7115 chr2R 15084954 intergenic not near genes chr2R 15088512 intergenic not near genes chr2R 15092069 5` UTR CR44457 + chr2R_29_15085001 chr2R_15085001 RAL-303_100b 1945 chr2R 15094860 15094916 chr2R 15094962 15095018 28 100 46.5 46.0 46.2 0.6 158 chr2R 15094860 intergenic not near genes chr2R 15094939 intergenic not near genes chr2R 15095018 intergenic not near genes chr2R_28_15090001 chr2R_15090001 RAL-303_100b 1946 chr2R 15119293 15119351 chr2R 15127797 15127852 Tirant 59 8502 14.5 13.0 13.8 4.0 8559 chr2R 15119293 intron chn + chr2R 15123572 intron chn + chr2R 15127852 intron chn + chr2R_59_15120001 chr2R_15120001 RAL-303_100b 1947 chr2R 15133411 15133459 chr2R 15133553 15133571 18 137 42.0 33.5 37.8 0.5 160 chr2R 15133411 intron chn + chr2R 15133491 intron chn + chr2R 15133571 intron chn + chr2R_18_15130001 chr2R_15130001 RAL-303_100b 1948 chr2R 15137943 15138000 chr2R 15138048 15138086 53 104 11.5 4.5 8.0 5.9 143 chr2R 15137943 intron chn + chr2R 15138014 intron chn + chr2R 15138086 intron chn + chr2R_53_15135001 chr2R_15135001 RAL-303_100b 1949 chr2R 15175779 15175829 chr2R 15176881 15176931 25 1100 42.0 37.0 39.5 0.6 1152 chr2R 15175779 intron igl + chr2R 15176355 intron igl + chr2R 15176931 intron igl + chr2R_25_15175001 chr2R_15175001 RAL-303_100b 1950 chr2R 15230357 15230375 chr2R 15230670 15230677 10 303 58.5 0.5 29.5 0.3 320 chr2R 15230357 intron,5` UTR Fs -,CR44370 + chr2R 15230517 intron,5` UTR Fs -,CR44370 + chr2R 15230677 intron,5` UTR Fs -,CR44370 + chr2R_10_15230001 chr2R_15230001 RAL-303_100b 1951 chr2R 15235061 15235084 chr2R 15235214 15235221 15 152 16.5 26.5 21.5 0.7 160 chr2R 15235061 intron Fs - chr2R 15235141 intron Fs - chr2R 15235221 intron Fs - chr2R_15_15235001 chr2R_15235001 RAL-303_100b 1952 chr2R 15259042 15259083 chr2R 15259151 15259192 10 109 18.5 24.5 21.5 0.4 150 chr2R 15259042 intron ItgalphaPS4 + chr2R 15259117 intron ItgalphaPS4 + chr2R 15259192 intron ItgalphaPS4 + chr2R_10_15255001 chr2R_15255001 RAL-303_100b 1953 chr2R 15294656 15294703 chr2R 15294763 15294809 35 105 60.5 62.0 61.2 0.6 153 chr2R 15294656 intron,3` UTR Trpm -,CR44241 - chr2R 15294732 intron,3` UTR Trpm -,CR44241 - chr2R 15294809 intron,3` UTR Trpm -,CR44241 - chr2R_35_15290001 chr2R_15290001 RAL-303_100b 1954 chr2R 15296134 15296173 chr2R 15296242 15296281 38 105 16.0 14.0 15.0 2.4 147 chr2R 15296134 intron Trpm - chr2R 15296208 intron Trpm - chr2R 15296281 intron Trpm - chr2R_38_15295001 chr2R_15295001 RAL-303_100b 1955 chr2R 15330182 15330235 chr2R 15330341 15330394 17 158 6.5 19.0 12.8 1.2 212 chr2R 15330182 intergenic CR44371 - chr2R 15330288 intergenic CR44371 - chr2R 15330394 3` UTR CR44371 - chr2R_17_15330001 chr2R_15330001 RAL-303_100b 1956 chr2R 15363638 15363679 chr2R 15363743 15363785 23 101 21.5 18.0 19.8 1.1 147 chr2R 15363638 intron unc-5 + chr2R 15363712 intron unc-5 + chr2R 15363785 intron unc-5 + chr2R_23_15360001 chr2R_15360001 RAL-303_100b 1957 chr2R 15374789 15375059 chr2R 15374895 15375194 25 120 18.5 7.5 13.0 1.8 405 chr2R 15374789 intergenic not near genes chr2R 15374992 intergenic not near genes chr2R 15375194 intergenic not near genes chr2R_25_15370001 chr2R_15370001 RAL-303_100b 1958 chr2R 15375060 15375076 chr2R 15375195 15375196 8 131 14.0 7.5 10.8 0.7 136 chr2R 15375060 intergenic not near genes chr2R 15375128 intergenic not near genes chr2R 15375196 intergenic not near genes chr2R_8_15375001 chr2R_15375001 RAL-303_100b 1959 chr2R 15375347 15375362 chr2R 15376189 15376199 15 841 1.0 26.5 13.8 1.0 852 chr2R 15375347 intergenic not near genes chr2R 15375773 intergenic not near genes chr2R 15376199 intergenic dup - chr2R_15_15375001 chr2R_15375001 RAL-303_100b 1960 chr2R 15393266 15393321 chr2R 15393368 15393423 24 101 50.0 48.5 49.2 0.5 157 chr2R 15393266 intergenic not near genes chr2R 15393344 intergenic not near genes chr2R 15393423 intergenic not near genes chr2R_24_15390001 chr2R_15390001 RAL-303_100b 1961 chr2R 15405182 15405202 chr2R 15405286 15405306 5 103 4.0 31.0 17.5 0.3 124 chr2R 15405182 intron CG43729 + chr2R 15405244 intron CG43729 + chr2R 15405306 intron CG43729 + chr2R_5_15405001 chr2R_15405001 RAL-303_100b 1962 chr2R 15497651 15497696 chr2R 15497748 15497772 24 95 9.5 6.0 7.8 2.7 121 chr2R 15497651 intergenic CG12964 - chr2R 15497712 intergenic CG12964 - chr2R 15497772 intergenic not near genes chr2R_24_15495001 chr2R_15495001 RAL-303_100b 1963 chr2R 15529940 15529986 chr2R 15530051 15530097 25 110 51.0 52.5 51.8 0.5 157 chr2R 15529940 intron Khc-73 - chr2R 15530018 intron Khc-73 - chr2R 15530097 intron Khc-73 - chr2R_25_15530001 chr2R_15530001 RAL-303_100b 1964 chr2R 15578564 15578608 chr2R 15578835 15578844 18 268 49.5 19.5 34.5 0.5 280 chr2R 15578564 intergenic not near genes chr2R 15578704 intergenic not near genes chr2R 15578844 intergenic not near genes chr2R_18_15575001 chr2R_15575001 RAL-303_100b 1965 chr2R 15606106 15606129 chr2R 15606208 15606231 6 102 35.0 28.0 31.5 0.2 125 chr2R 15606106 intergenic not near genes chr2R 15606168 intergenic not near genes chr2R 15606231 intergenic not near genes chr2R_6_15605001 chr2R_15605001 RAL-303_100b 1966 chr2R 15645654 15645700 chr2R 15645773 15645788 12 107 39.0 21.5 30.2 0.4 134 chr2R 15645654 intron CG42524 + chr2R 15645721 intron CG42524 + chr2R 15645788 intron CG42524 + chr2R_12_15645001 chr2R_15645001 RAL-303_100b 1967 chr2R 15652549 15652570 chr2R 15652672 15652693 5 120 40.0 48.5 44.2 0.1 144 chr2R 15652549 intron CG42524 + chr2R 15652621 intron CG42524 + chr2R 15652693 intron CG42524 + chr2R_5_15650001 chr2R_15650001 RAL-303_100b 1968 chr2R 15652573 15652580 chr2R 15652671 15652692 4 106 37.0 47.0 42.0 0.1 119 chr2R 15652573 intron CG42524 + chr2R 15652632 intron CG42524 + chr2R 15652692 intron CG42524 + chr2R_4_15650001 chr2R_15650001 RAL-303_100b 1969 chr2R 15656007 15656067 chr2R 15656123 15656183 6 116 30.5 36.5 33.5 0.2 176 chr2R 15656007 intron CG42524 + chr2R 15656095 intron CG42524 + chr2R 15656183 intron CG42524 + chr2R_6_15655001 chr2R_15655001 RAL-303_100b 1970 chr2R 15685339 15685395 chr2R 15685467 15685513 16 124 47.0 36.5 41.8 0.4 174 chr2R 15685339 intron,exon Ranbp11 +,CG30082 - chr2R 15685426 intron,intron Ranbp11 +,CG30082 - chr2R 15685513 intron,intron Ranbp11 +,CG30082 - chr2R_16_15685001 chr2R_15685001 RAL-303_100b 1971 chr2R 15704287 15704321 chr2R 15704717 15704751 17 427 58.5 48.0 53.2 0.3 464 chr2R 15704287 intergenic not near genes chr2R 15704519 intergenic not near genes chr2R 15704751 intergenic not near genes chr2R_17_15700001 chr2R_15700001 RAL-303_100b 1972 chr2R 15720862 15720912 chr2R 15720966 15720981 5 98 41.0 42.5 41.8 0.1 119 chr2R 15720862 intergenic not near genes chr2R 15720922 intergenic not near genes chr2R 15720981 intergenic not near genes chr2R_5_15720001 chr2R_15720001 RAL-303_100b 1973 chr2R 15783765 15783773 chr2R 15783892 15783900 4 126 51.5 40.0 45.8 0.1 135 chr2R 15783765 intron Zasp52 - chr2R 15783832 intron Zasp52 - chr2R 15783900 intron Zasp52 - chr2R_4_15780001 chr2R_15780001 RAL-303_100b 1974 chr2R 15783775 15783825 chr2R 15783889 15783931 28 121 36.0 39.0 37.5 0.7 156 chr2R 15783775 intron Zasp52 - chr2R 15783853 intron Zasp52 - chr2R 15783931 intron Zasp52 - chr2R_28_15780001 chr2R_15780001 RAL-303_100b 1975 chr2R 15794864 15794883 chr2R 15794979 15794998 6 115 40.0 41.0 40.5 0.1 134 chr2R 15794864 intron,5` UTR Zasp52 -,tun + chr2R 15794931 intron,5` UTR Zasp52 -,tun + chr2R 15794998 intron,intron Zasp52 -,tun + chr2R_6_15790001 chr2R_15790001 RAL-303_100b 1976 chr2R 15828128 15828154 chr2R 15828313 15828339 7 185 19.0 24.0 21.5 0.3 211 chr2R 15828128 intron,intron tun +,Poxn - chr2R 15828234 intron,intron tun +,Poxn - chr2R 15828339 intron,intron tun +,Poxn - chr2R_7_15825001 chr2R_15825001 RAL-303_100b 1977 chr2R 15833506 15833551 chr2R 15833608 15833628 30 104 23.0 21.5 22.2 1.3 122 chr2R 15833506 intron,intron tun +,Poxn - chr2R 15833567 intron,intron tun +,Poxn - chr2R 15833628 intron,intron tun +,Poxn - chr2R_30_15830001 chr2R_15830001 RAL-303_100b 1978 chr2R 15845125 15845183 chr2R 15845229 15845287 26 101 2.5 12.0 7.2 3.2 162 chr2R 15845125 intron,intron tun +,CG8249 - chr2R 15845206 intron,intron tun +,CG8249 - chr2R 15845287 intron,intron tun +,CG8249 - chr2R_26_15845001 chr2R_15845001 RAL-303_100b 1979 chr2R 15848258 15848272 chr2R 15848406 15848411 7 146 9.5 0.0 4.8 1.2 153 chr2R 15848258 intron tun + chr2R 15848334 intron tun + chr2R 15848411 intron tun + chr2R_7_15845001 chr2R_15845001 RAL-303_100b 1980 chr2R 15891797 15891836 chr2R 15891893 15891937 21 100 5.5 17.0 11.2 1.7 140 chr2R 15891797 intron sli - chr2R 15891867 intron sli - chr2R 15891937 intron sli - chr2R_21_15890001 chr2R_15890001 RAL-303_100b 1981 chr2R 15895862 15895920 chr2R 15895976 15896035 47 114 46.5 50.0 48.2 1.0 173 chr2R 15895862 intron,exon sli -,CG33463 - chr2R 15895948 intron,exon sli -,CG33463 - chr2R 15896035 intron,intron sli -,CG33463 - chr2R_47_15895001 chr2R_15895001 RAL-303_100b 1982 chr2R 15901090 15901130 chr2R 15901192 15901232 18 95 43.5 45.5 44.5 0.4 142 chr2R 15901090 intron sli - chr2R 15901161 intron sli - chr2R 15901232 intron sli - chr2R_18_15900001 chr2R_15900001 RAL-303_100b 1983 chr2R 15930355 15930392 chr2R 15930457 15930461 8 95 35.0 3.0 19.0 0.4 106 chr2R 15930355 intron bdg - chr2R 15930408 intron bdg - chr2R 15930461 intron bdg - chr2R_8_15930001 chr2R_15930001 RAL-303_100b 1984 chr2R 15951835 15951844 chr2R 15951936 15951940 7 100 6.5 29.5 18.0 0.4 105 chr2R 15951835 intron Strn-Mlck - chr2R 15951888 intron Strn-Mlck - chr2R 15951940 intron Strn-Mlck - chr2R_7_15950001 chr2R_15950001 RAL-303_100b 1985 chr2R 15951851 15951865 chr2R 15951912 15951936 8 90 13.5 23.0 18.2 0.4 85 chr2R 15951851 intron Strn-Mlck - chr2R 15951894 intron Strn-Mlck - chr2R 15951936 intron Strn-Mlck - chr2R_8_15950001 chr2R_15950001 RAL-303_100b 1986 chr2R 16037205 16037218 chr2R 16037306 16037320 11 102 41.0 43.5 42.2 0.3 115 chr2R 16037205 intron SP2353 + chr2R 16037262 intron SP2353 + chr2R 16037320 intron SP2353 + chr2R_11_16035001 chr2R_16035001 RAL-303_100b 1987 chr2R 16037220 16037228 chr2R 16037305 16037330 12 94 38.0 40.0 39.0 0.3 110 chr2R 16037220 intron SP2353 + chr2R 16037275 intron SP2353 + chr2R 16037330 intron SP2353 + chr2R_12_16035001 chr2R_16035001 RAL-303_100b 1988 chr2R 16040747 16040800 chr2R 16040857 16040912 21 108 40.0 43.5 41.8 0.5 165 chr2R 16040747 intron SP2353 + chr2R 16040830 intron SP2353 + chr2R 16040912 exon SP2353 + chr2R_21_16040001 chr2R_16040001 RAL-303_100b 1989 chr2R 16054931 16054960 chr2R 16055033 16055068 24 103 35.0 33.5 34.2 0.7 137 chr2R 16054931 intron CG8405 + chr2R 16055000 intron CG8405 + chr2R 16055068 intron CG8405 + chr2R_24_16050001 chr2R_16050001 RAL-303_100b 1990 chr2R 16061709 16061714 chr2R 16064367 16064372 Burdock 6 2658 47.0 45.5 46.2 0.1 2663 chr2R 16061709 intergenic not near genes chr2R 16063040 intergenic not near genes chr2R 16064372 intergenic not near genes chr2R_6_16060001 chr2R_16060001 RAL-303_100b 1991 chr2R 16119864 16119920 chr2R 16120013 16120069 33 148 55.5 54.5 55.0 0.6 205 chr2R 16119864 5` UTR Jhe + chr2R 16119966 intron Jhe + chr2R 16120069 intron Jhe + chr2R_33_16115001 chr2R_16115001 RAL-303_100b 1992 chr2R 16136621 16136652 chr2R 16136719 16136754 29 101 9.5 17.5 13.5 2.0 133 chr2R 16136621 intron spin + chr2R 16136688 intron spin + chr2R 16136754 intron spin + chr2R_29_16135001 chr2R_16135001 RAL-303_100b 1993 chr2R 16155602 16155612 chr2R 16155711 16155721 9 109 40.5 54.5 47.5 0.2 119 chr2R 16155602 intron lbk + chr2R 16155662 intron lbk + chr2R 16155721 intron lbk + chr2R_9_16155001 chr2R_16155001 RAL-303_100b 1994 chr2R 16217757 16217795 chr2R 16217858 16217896 27 100 37.5 41.0 39.2 0.7 139 chr2R 16217757 intron mrj - chr2R 16217826 intron mrj - chr2R 16217896 intron mrj - chr2R_27_16215001 chr2R_16215001 RAL-303_100b 1995 chr2R 16245410 16245431 chr2R 16245508 16245550 14 116 21.5 20.0 20.8 0.6 140 chr2R 16245410 intron CngA - chr2R 16245480 intron CngA - chr2R 16245550 intron CngA - chr2R_14_16245001 chr2R_16245001 RAL-303_100b 1996 chr2R 16352841 16352866 chr2R 16352949 16352974 26 108 12.0 7.5 9.8 2.4 133 chr2R 16352841 intergenic not near genes chr2R 16352908 intergenic not near genes chr2R 16352974 intergenic not near genes chr2R_26_16350001 chr2R_16350001 RAL-303_100b 1997 chr2R 16363690 16363748 chr2R 16364617 16364667 14 914 51.5 41.0 46.2 0.3 977 chr2R 16363690 exon CG15711 - chr2R 16364178 exon CG15711 - chr2R 16364667 5` UTR CG15711 - chr2R_14_16360001 chr2R_16360001 RAL-303_100b 1998 chr2R 16474318 16474337 chr2R 16474429 16474448 9 111 66.5 50.5 58.5 0.2 130 chr2R 16474318 intergenic not near genes chr2R 16474383 intergenic not near genes chr2R 16474448 intergenic not near genes chr2R_9_16470001 chr2R_16470001 RAL-303_100b 1999 chr2R 16474339 16474374 chr2R 16474427 16474485 18 106 46.5 48.5 47.5 0.4 146 chr2R 16474339 intergenic not near genes chr2R 16474412 intergenic not near genes chr2R 16474485 intergenic not near genes chr2R_18_16470001 chr2R_16470001 RAL-303_100b 2000 chr2R 16489246 16489262 chr2R 16489355 16489370 15 109 32.0 17.0 24.5 0.6 124 chr2R 16489246 intergenic CG33459 + chr2R 16489308 intergenic CG33459 + chr2R 16489370 intergenic CG33459 + chr2R_15_16485001 chr2R_16485001 RAL-303_100b 2001 chr2R 16489264 16489298 chr2R 16489351 16489407 40 106 16.5 18.0 17.2 2.2 143 chr2R 16489264 intergenic CG33459 + chr2R 16489336 intergenic CG33459 + chr2R 16489407 intergenic CG33459 + chr2R_40_16485001 chr2R_16485001 RAL-303_100b 2002 chr2R 16513549 16513571 chr2R 16514088 16514099 12 537 56.0 48.0 52.0 0.2 550 chr2R 16513549 intron Sema-2a + chr2R 16513824 intron Sema-2a + chr2R 16514099 intron Sema-2a + chr2R_12_16510001 chr2R_16510001 RAL-303_100b 2003 chr2R 16518019 16518074 chr2R 16518120 16518175 48 100 13.0 11.0 12.0 3.7 156 chr2R 16518019 intron Sema-2a + chr2R 16518097 intron Sema-2a + chr2R 16518175 intron Sema-2a + chr2R_48_16515001 chr2R_16515001 RAL-303_100b 2004 chr2R 16538066 16538090 chr2R 16538185 16538209 12 118 16.5 10.0 13.2 0.8 143 chr2R 16538066 intergenic not near genes chr2R 16538138 intergenic not near genes chr2R 16538209 intergenic not near genes chr2R_12_16535001 chr2R_16535001 RAL-303_100b 2005 chr2R 16539616 16539670 chr2R 16544850 16544904 copia 33 5232 12.0 8.0 10.0 3.0 5288 chr2R 16539616 intergenic not near genes chr2R 16542260 intergenic not near genes chr2R 16544904 intergenic not near genes chr2R_33_16540001 chr2R_16540001 RAL-303_100b 2006 chr2R 16494778 16494781 chr2R 16564804 16564807 5 70022 30.0 62.0 46.0 0.1 70029 chr2R 16494778 intergenic not near genes chr2R 16529792 intron Sema-2a + chr2R 16564807 intron DAT - chr2R_5_16525001 chr2R_16525001 RAL-303_100b 2007 chr2R 16571849 16571905 chr2R 16571969 16572025 57 117 13.0 10.5 11.8 4.5 176 chr2R 16571849 intergenic CG4927 + chr2R 16571937 intergenic CG4927 + chr2R 16572025 intergenic CG4927 + chr2R_57_16570001 chr2R_16570001 RAL-303_100b 2008 chr2R 16574362 16574391 chr2R 16574642 16574671 8 279 20.0 27.5 23.8 0.3 309 chr2R 16574362 intergenic CG4927 +,CG8317 - chr2R 16574516 intergenic CG8317 -,CG4927 + chr2R 16574671 3` UTR CG8317 - chr2R_8_16570001 chr2R_16570001 RAL-303_100b 2009 chr2R 16617065 16617090 chr2R 16617155 16617195 13 100 41.0 52.0 46.5 0.3 130 chr2R 16617065 intron CG5065 + chr2R 16617130 intron CG5065 + chr2R 16617195 intron CG5065 + chr2R_13_16615001 chr2R_16615001 RAL-303_100b 2010 chr2R 16618699 16618704 chr2R 16618800 16618805 6 101 22.5 50.5 36.5 0.2 106 chr2R 16618699 intron CG5065 + chr2R 16618752 intron CG5065 + chr2R 16618805 5` UTR CG5065 + chr2R_6_16615001 chr2R_16615001 RAL-303_100b 2011 chr2R 16618723 16618746 chr2R 16618794 16618847 15 99 38.5 51.0 44.8 0.3 124 chr2R 16618723 intron CG5065 + chr2R 16618785 intron CG5065 + chr2R 16618847 5` UTR CG5065 + chr2R_15_16615001 chr2R_16615001 RAL-303_100b 2012 chr2R 16682577 16682630 chr2R 16682679 16682701 17 98 35.5 36.0 35.8 0.5 124 chr2R 16682577 intron CG30463 - chr2R 16682639 intron CG30463 - chr2R 16682701 intron CG30463 - chr2R_17_16680001 chr2R_16680001 RAL-303_100b 2013 chr2R 16683898 16683955 chr2R 16684288 16684307 21 386 39.5 35.5 37.5 0.5 409 chr2R 16683898 intron CG30463 - chr2R 16684102 intron CG30463 - chr2R 16684307 intron CG30463 - chr2R_21_16680001 chr2R_16680001 RAL-303_100b 2014 chr2R 16701972 16702026 chr2R 16702081 16702137 27 106 44.0 42.5 43.2 0.6 165 chr2R 16701972 intron CG30463 - chr2R 16702054 intron CG30463 - chr2R 16702137 intron CG30463 - chr2R_27_16700001 chr2R_16700001 RAL-303_100b 2015 chr2R 16713053 16713057 chr2R 16713160 16713165 7 108 0.0 22.5 11.2 0.6 112 chr2R 16713053 intron CG30463 - chr2R 16713109 intron CG30463 - chr2R 16713165 intron CG30463 - chr2R_7_16710001 chr2R_16710001 RAL-303_100b 2016 chr2R 16713058 16713066 chr2R 16713131 16713172 6 102 0.5 8.5 4.5 1.1 114 chr2R 16713058 intron CG30463 - chr2R 16713115 intron CG30463 - chr2R 16713172 intron CG30463 - chr2R_6_16710001 chr2R_16710001 RAL-303_100b 2017 chr2R 16720964 16721015 chr2R 16721066 16721117 35 99 43.0 46.0 44.5 0.8 153 chr2R 16720964 intron CG30463 - chr2R 16721040 intron CG30463 - chr2R 16721117 intron CG30463 - chr2R_35_16720001 chr2R_16720001 RAL-303_100b 2018 chr2R 16723901 16723951 chr2R 16724003 16724056 27 102 36.5 32.5 34.5 0.8 155 chr2R 16723901 intron CG30463 - chr2R 16723978 intron CG30463 - chr2R 16724056 intron CG30463 - chr2R_27_16720001 chr2R_16720001 RAL-303_100b 2019 chr2R 16775630 16775674 chr2R 16775922 16775966 42 291 11.0 21.5 16.2 2.4 336 chr2R 16775630 3` UTR Arp53D + chr2R 16775798 intergenic Arp53D + chr2R 16775966 intergenic Arp53D + chr2R_42_16775001 chr2R_16775001 RAL-303_100b 2020 chr2R 16781139 16781192 chr2R 16781246 16781253 8 99 30.5 32.0 31.2 0.2 114 chr2R 16781139 exon resilin + chr2R 16781196 exon resilin + chr2R 16781253 exon resilin + chr2R_8_16780001 chr2R_16780001 RAL-303_100b 2021 chr2R 16782269 16782555 chr2R 16782392 16782424 19 114 41.0 39.5 40.2 0.5 155 chr2R 16782269 exon resilin + chr2R 16782346 exon resilin + chr2R 16782424 exon resilin + chr2R_19_16780001 chr2R_16780001 RAL-303_100b 2022 chr2R 16787457 16787463 chr2R 16787564 16787570 4 107 44.5 43.5 44.0 0.1 113 chr2R 16787457 intron CG5522 + chr2R 16787514 intron CG5522 + chr2R 16787570 intron CG5522 + chr2R_4_16785001 chr2R_16785001 RAL-303_100b 2023 chr2R 16787465 16787493 chr2R 16787556 16787600 7 97 40.5 42.5 41.5 0.2 135 chr2R 16787465 intron CG5522 + chr2R 16787532 intron CG5522 + chr2R 16787600 intron CG5522 + chr2R_7_16785001 chr2R_16785001 RAL-303_100b 2024 chr2R 16800060 16800074 chr2R 16800156 16800180 7 103 28.5 36.0 32.2 0.2 120 chr2R 16800060 intergenic not near genes chr2R 16800120 intergenic not near genes chr2R 16800180 intergenic not near genes chr2R_7_16800001 chr2R_16800001 RAL-303_100b 2025 chr2R 16806338 16806358 chr2R 16806638 16806659 8 301 46.5 37.5 42.0 0.2 321 chr2R 16806338 intergenic not near genes chr2R 16806498 intergenic not near genes chr2R 16806659 intergenic not near genes chr2R_8_16805001 chr2R_16805001 RAL-303_100b 2026 chr2R 16806361 16806365 chr2R 16806632 16806666 7 292 42.0 33.5 37.8 0.2 305 chr2R 16806361 intergenic not near genes chr2R 16806514 intergenic not near genes chr2R 16806666 intergenic not near genes chr2R_7_16805001 chr2R_16805001 RAL-303_100b 2027 chr2R 16880009 16880062 chr2R 16880111 16880164 15 101 22.5 13.0 17.8 0.8 155 chr2R 16880009 intron CG8910 - chr2R 16880086 intron CG8910 - chr2R 16880164 intron CG8910 - chr2R_15_16880001 chr2R_16880001 RAL-303_100b 2028 chr2R 16889547 16889564 chr2R 16889664 16889681 11 117 48.5 47.5 48.0 0.2 134 chr2R 16889547 intron CG8910 - chr2R 16889614 intron CG8910 - chr2R 16889681 intron CG8910 - chr2R_11_16885001 chr2R_16885001 RAL-303_100b 2029 chr2R 16889565 16889594 chr2R 16889651 16889707 11 111 40.0 42.5 41.2 0.3 142 chr2R 16889565 intron CG8910 - chr2R 16889636 intron CG8910 - chr2R 16889707 intron CG8910 - chr2R_11_16885001 chr2R_16885001 RAL-303_100b 2030 chr2R 16892294 16892298 chr2R 16892411 16892415 4 117 12.5 7.5 10.0 0.4 121 chr2R 16892294 intron CG8910 - chr2R 16892354 intron CG8910 - chr2R 16892415 intron CG8910 - chr2R_4_16890001 chr2R_16890001 RAL-303_100b 2031 chr2R 16893750 16893805 chr2R 16893858 16893913 27 106 53.0 54.0 53.5 0.5 163 chr2R 16893750 intron CG8910 - chr2R 16893832 intron CG8910 - chr2R 16893913 intron CG8910 - chr2R_27_16890001 chr2R_16890001 RAL-303_100b 2032 chr2R 16926838 16926866 chr2R 16926958 16926986 31 119 46.5 36.0 41.2 0.7 148 chr2R 16926838 intron Pkc53E + chr2R 16926912 intron Pkc53E + chr2R 16926986 intron Pkc53E + chr2R_31_16925001 chr2R_16925001 RAL-303_100b 2033 chr2R 16930614 16930620 chr2R 16930715 16930723 4 102 20.5 25.0 22.8 0.2 109 chr2R 16930614 intron Pkc53E + chr2R 16930668 intron Pkc53E + chr2R 16930723 intron Pkc53E + chr2R_4_16930001 chr2R_16930001 RAL-303_100b 2034 chr2R 16971277 16971335 chr2R 16971386 16971444 31 106 44.0 42.5 43.2 0.7 167 chr2R 16971277 5` UTR CR44377 + chr2R 16971360 5` UTR CR44377 + chr2R 16971444 5` UTR CR44377 + chr2R_31_16970001 chr2R_16970001 RAL-303_100b 2035 chr2R 16971471 16971518 chr2R 16971753 16971799 7 277 17.5 26.0 21.8 0.3 328 chr2R 16971471 5` UTR CR44377 + chr2R 16971635 5` UTR CR44377 + chr2R 16971799 intergenic CR44377 + chr2R_7_16970001 chr2R_16970001 RAL-303_100b 2036 chr2R 16972244 16972292 chr2R 16972434 16972482 27 189 6.0 32.5 19.2 1.3 238 chr2R 16972244 intergenic not near genes chr2R 16972363 intergenic not near genes chr2R 16972482 intergenic not near genes chr2R_27_16970001 chr2R_16970001 RAL-303_100b 2037 chr2R 16975180 16975222 chr2R 16975282 16975324 23 100 14.0 15.0 14.5 1.5 144 chr2R 16975180 intron Cbp53E + chr2R 16975252 intron Cbp53E + chr2R 16975324 intron Cbp53E + chr2R_23_16975001 chr2R_16975001 RAL-303_100b 2038 chr2R 16981943 16982077 chr2R 16982081 16982180 11 132 20.5 19.0 19.8 0.5 237 chr2R 16981943 intron Cbp53E + chr2R 16982062 intron Cbp53E + chr2R 16982180 intron Cbp53E + chr2R_11_16980001 chr2R_16980001 RAL-303_100b 2039 chr2R 16989093 16989149 chr2R 16989219 16989275 18 123 28.0 31.5 29.8 0.6 182 chr2R 16989093 intron Cbp53E + chr2R 16989184 intron Cbp53E + chr2R 16989275 intron Cbp53E + chr2R_18_16985001 chr2R_16985001 RAL-303_100b 2040 chr2R 17077974 17077980 chr2R 17078076 17078082 5 102 44.5 35.5 40.0 0.1 108 chr2R 17077974 intron CG30460 - chr2R 17078028 intron CG30460 - chr2R 17078082 intron CG30460 - chr2R_5_17075001 chr2R_17075001 RAL-303_100b 2041 chr2R 17079034 17079089 chr2R 17079141 17079195 12 106 29.0 27.5 28.2 0.4 161 chr2R 17079034 intron CG30460 - chr2R 17079114 intron CG30460 - chr2R 17079195 intron CG30460 - chr2R_12_17075001 chr2R_17075001 RAL-303_100b 2042 chr2R 17139958 17139966 chr2R 17140239 17140247 4 281 57.0 20.0 38.5 0.1 289 chr2R 17139958 intergenic CG43103 -,CG11395 + chr2R 17140102 intergenic CG43103 -,CG43107 -,CR44386 + chr2R 17140247 intergenic CG43107 -,CG43103 -,CR44386 + chr2R_4_17140001 chr2R_17140001 RAL-303_100b 2043 chr2R 17139970 17140009 chr2R 17140236 17140290 19 276 45.5 18.0 31.8 0.6 320 chr2R 17139970 intergenic CG43103 -,CG11395 + chr2R 17140130 intergenic CG43103 -,CG43107 -,CR44386 + chr2R 17140290 intergenic CG43107 -,CR44386 +,CG43103 - chr2R_19_17140001 chr2R_17140001 RAL-303_100b 2044 chr2R 17147224 17147241 chr2R 17152280 17152296 jockey 11 5055 30.0 19.0 24.5 0.4 5072 chr2R 17147224 intergenic not near genes chr2R 17149760 intergenic not near genes chr2R 17152296 intergenic not near genes chr2R_11_17145001 chr2R_17145001 RAL-303_100b 2045 chr2R 17147242 17147268 chr2R 17152273 17152324 jockey 27 5053 19.0 15.0 17.0 1.5 5082 chr2R 17147242 intergenic not near genes chr2R 17149783 intergenic not near genes chr2R 17152324 intergenic not near genes chr2R_27_17145001 chr2R_17145001 RAL-303_100b 2046 chr2R 17161329 17161354 chr2R 17161561 17161574 13 228 22.5 0.0 11.2 1.1 245 chr2R 17161329 intergenic CG30457 - chr2R 17161452 intergenic not near genes chr2R 17161574 intergenic not near genes chr2R_13_17160001 chr2R_17160001 RAL-303_100b 2047 chr2R 17176353 17176386 chr2R 17182555 17182601 diver 27 6212 1.0 19.5 10.2 2.4 6248 chr2R 17176353 intergenic not near genes chr2R 17179477 intergenic not near genes chr2R 17182601 intergenic not near genes chr2R_27_17175001 chr2R_17175001 RAL-303_100b 2048 chr2R 17188705 17188744 chr2R 17188818 17188857 21 112 27.0 27.5 27.2 0.7 152 chr2R 17188705 intergenic CR44389 - chr2R 17188781 intergenic CR44389 - chr2R 17188857 3` UTR CR44389 - chr2R_21_17185001 chr2R_17185001 RAL-303_100b 2049 chr2R 17236483 17236537 chr2R 17241712 17241761 copia 46 5227 17.0 17.0 17.0 2.6 5278 chr2R 17236483 intron mbl + chr2R 17239122 intron mbl + chr2R 17241761 intron mbl + chr2R_46_17235001 chr2R_17235001 RAL-303_100b 2050 chr2R 17273072 17273122 chr2R 17273176 17273230 22 106 40.5 35.0 37.8 0.6 158 chr2R 17273072 intron mbl + chr2R 17273151 intron mbl + chr2R 17273230 intron mbl + chr2R_22_17270001 chr2R_17270001 RAL-303_100b 2051 chr2R 17319113 17319139 chr2R 17319379 17319405 16 263 37.5 52.0 44.8 0.3 292 chr2R 17319113 intron mbl + chr2R 17319259 intron mbl + chr2R 17319405 intron mbl + chr2R_16_17315001 chr2R_17315001 RAL-303_100b 2052 chr2R 17336350 17336398 chr2R 17336452 17336479 21 96 36.0 32.0 34.0 0.6 129 chr2R 17336350 intron mbl + chr2R 17336414 intron mbl + chr2R 17336479 intron mbl + chr2R_21_17335001 chr2R_17335001 RAL-303_100b 2053 chr2R 17339597 17339602 chr2R 17339700 17339720 7 115 0.0 30.5 15.2 0.4 123 chr2R 17339597 intron mbl + chr2R 17339658 intron mbl + chr2R 17339720 intron mbl + chr2R_7_17335001 chr2R_17335001 RAL-303_100b 2054 chr2R 17381566 17381572 chr2R 17381673 17381685 5 111 57.5 46.5 52.0 0.1 119 chr2R 17381566 intergenic not near genes chr2R 17381626 intergenic not near genes chr2R 17381685 intergenic not near genes chr2R_5_17380001 chr2R_17380001 RAL-303_100b 2055 chr2R 17381574 17381615 chr2R 17381672 17381728 19 108 44.0 47.5 45.8 0.4 154 chr2R 17381574 intergenic not near genes chr2R 17381651 intergenic not near genes chr2R 17381728 intergenic not near genes chr2R_19_17380001 chr2R_17380001 RAL-303_100b 2056 chr2R 17395261 17395314 chr2R 17395364 17395417 31 102 45.5 44.0 44.8 0.7 156 chr2R 17395261 intron Sip1 + chr2R 17395339 intron Sip1 + chr2R 17395417 intron Sip1 + chr2R_31_17395001 chr2R_17395001 RAL-303_100b 2057 chr2R 17397806 17397826 chr2R 17397902 17397942 11 113 24.5 21.5 23.0 0.5 136 chr2R 17397806 intron Sip1 + chr2R 17397874 intron Sip1 + chr2R 17397942 intron Sip1 + chr2R_11_17395001 chr2R_17395001 RAL-303_100b 2058 chr2R 17443751 17443804 chr2R 17443852 17443905 17 99 34.0 37.0 35.5 0.5 154 chr2R 17443751 intron EDTP - chr2R 17443828 intron EDTP - chr2R 17443905 intron EDTP - chr2R_17_17440001 chr2R_17440001 RAL-303_100b 2059 chr2R 17453638 17453688 chr2R 17453762 17453812 18 120 17.5 28.5 23.0 0.8 174 chr2R 17453638 intron CG10764 + chr2R 17453725 intron CG10764 + chr2R 17453812 intron CG10764 + chr2R_18_17450001 chr2R_17450001 RAL-303_100b 2060 chr2R 17458980 17459033 chr2R 17459090 17459143 58 108 18.5 16.5 17.5 3.1 163 chr2R 17458980 intron CG14478 + chr2R 17459062 intron CG14478 + chr2R 17459143 intron CG14478 + chr2R_58_17455001 chr2R_17455001 RAL-303_100b 2061 chr2R 17470326 17470352 chr2R 17470435 17470456 6 107 29.0 30.5 29.8 0.2 130 chr2R 17470326 intron qkr54B + chr2R 17470391 intron qkr54B + chr2R 17470456 intron qkr54B + chr2R_6_17470001 chr2R_17470001 RAL-303_100b 2062 chr2R 17484525 17484572 chr2R 17492335 17492382 F-element 34 7808 47.5 40.5 44.0 0.8 7857 chr2R 17484525 5` UTR CG43110 - chr2R 17488454 intron NT5E-2 + chr2R 17492382 exon NT5E-2 + chr2R_34_17485001 chr2R_17485001 RAL-303_100b 2063 chr2R 17485893 17485950 chr2R 17490688 17490743 F-element 28 4791 8.5 6.5 7.5 3.3 4850 chr2R 17485893 5` UTR,intron CG43110 -,NT5E-2 + chr2R 17488318 intron NT5E-2 + chr2R 17490743 intron NT5E-2 + chr2R_28_17485001 chr2R_17485001 RAL-303_100b 2064 chr2R 17547551 17547593 chr2R 17547655 17547698 29 103 55.0 56.0 55.5 0.5 147 chr2R 17547551 intergenic RpL18A -,MESR4 + chr2R 17547624 intergenic MESR4 +,RpL18A - chr2R 17547698 intergenic MESR4 +,RpL18A - chr2R_29_17545001 chr2R_17545001 RAL-303_100b 2065 chr2R 17598075 17598134 chr2R 17598183 17598237 34 106 49.5 51.0 50.2 0.7 162 chr2R 17598075 intron lack + chr2R 17598156 intron lack + chr2R 17598237 intron lack + chr2R_34_17595001 chr2R_17595001 RAL-303_100b 2066 chr2R 17637812 17637857 chr2R 17637912 17637962 18 98 7.0 5.5 6.2 2.5 150 chr2R 17637812 intron CG10936 - chr2R 17637887 intron CG10936 - chr2R 17637962 intron CG10936 - chr2R_18_17635001 chr2R_17635001 RAL-303_100b 2067 chr2R 17655184 17655234 chr2R 17655281 17655336 24 94 48.0 45.0 46.5 0.5 152 chr2R 17655184 intron CCHa1-R - chr2R 17655260 intron CCHa1-R - chr2R 17655336 intron CCHa1-R - chr2R_24_17655001 chr2R_17655001 RAL-303_100b 2068 chr2R 17679580 17679597 chr2R 17679732 17679749 4 152 0.0 10.0 5.0 0.7 169 chr2R 17679580 intron Sema-1b - chr2R 17679664 intron Sema-1b - chr2R 17679749 intron Sema-1b - chr2R_4_17675001 chr2R_17675001 RAL-303_100b 2069 chr2R 17708370 17708423 chr2R 17708475 17708529 12 104 10.0 14.0 12.0 0.9 159 chr2R 17708370 intron CG6424 - chr2R 17708450 intron CG6424 - chr2R 17708529 intron CG6424 - chr2R_12_17705001 chr2R_17705001 RAL-303_100b 2070 chr2R 17782338 17782392 chr2R 17783566 17783620 pogo 16 1228 28.5 29.0 28.8 0.5 1282 chr2R 17782338 intergenic CG33981 -,fab1 - chr2R 17782979 intergenic not near genes chr2R 17783620 intergenic mir-31a - chr2R_16_17780001 chr2R_17780001 RAL-303_100b 2071 chr2R 17784000 17784056 chr2R 17784266 17784322 pogo 70 262 17.0 16.5 16.8 3.9 322 chr2R 17784000 intergenic mir-31a - chr2R 17784161 intergenic mir-31a - chr2R 17784322 intergenic mir-31a - chr2R_70_17780001 chr2R_17780001 RAL-303_100b 2072 chr2R 17785062 17785101 chr2R 17785175 17785214 6 113 19.5 26.5 23.0 0.2 152 chr2R 17785062 intergenic not near genes chr2R 17785138 intergenic not near genes chr2R 17785214 intergenic not near genes chr2R_6_17785001 chr2R_17785001 RAL-303_100b 2073 chr2R 17792573 17792624 chr2R 17792686 17792737 34 110 34.0 44.5 39.2 0.8 164 chr2R 17792573 intergenic CG5033 +,Dhit + chr2R 17792655 intergenic CG5033 +,Dhit + chr2R 17792737 intergenic Dhit +,CG5033 + chr2R_34_17790001 chr2R_17790001 RAL-303_100b 2074 chr2R 17794765 17794781 chr2R 17794869 17794885 4 104 5.0 17.0 11.0 0.3 120 chr2R 17794765 intron Dhit + chr2R 17794825 intron Dhit + chr2R 17794885 intron Dhit + chr2R_4_17790001 chr2R_17790001 RAL-303_100b 2075 chr2R 17849777 17849830 chr2R 17849959 17850012 23 180 34.5 35.5 35.0 0.6 235 chr2R 17849777 intron olf186-F + chr2R 17849894 intron olf186-F + chr2R 17850012 intron olf186-F + chr2R_23_17845001 chr2R_17845001 RAL-303_100b 2076 chr2R 17852908 17852913 chr2R 17853024 17853029 4 116 56.5 49.0 52.8 0.1 121 chr2R 17852908 intron olf186-F + chr2R 17852968 intron olf186-F + chr2R 17853029 intron olf186-F + chr2R_4_17850001 chr2R_17850001 RAL-303_100b 2077 chr2R 17852915 17852955 chr2R 17853015 17853071 27 113 43.0 45.5 44.2 0.6 156 chr2R 17852915 intron olf186-F + chr2R 17852993 intron olf186-F + chr2R 17853071 intron olf186-F + chr2R_27_17850001 chr2R_17850001 RAL-303_100b 2078 chr2R 17872074 17872096 chr2R 17872184 17872208 14 110 61.0 56.5 58.8 0.2 134 chr2R 17872074 intergenic Mapmodulin - chr2R 17872141 intergenic Mapmodulin - chr2R 17872208 intergenic Mapmodulin - chr2R_14_17870001 chr2R_17870001 RAL-303_100b 2079 chr2R 17872098 17872125 chr2R 17872183 17872237 20 109 48.0 56.5 52.2 0.4 139 chr2R 17872098 intergenic Mapmodulin - chr2R 17872168 intergenic Mapmodulin - chr2R 17872237 intergenic Mapmodulin - chr2R_20_17870001 chr2R_17870001 RAL-303_100b 2080 chr2R 17884430 17884433 chr2R 17884548 17884551 5 118 63.5 52.5 58.0 0.1 121 chr2R 17884430 intron Elk + chr2R 17884490 intron Elk + chr2R 17884551 intron Elk + chr2R_5_17880001 chr2R_17880001 RAL-303_100b 2081 chr2R 17884434 17884483 chr2R 17884547 17884601 29 116 56.5 52.0 54.2 0.5 167 chr2R 17884434 intron Elk + chr2R 17884518 intron Elk + chr2R 17884601 intron Elk + chr2R_29_17880001 chr2R_17880001 RAL-303_100b 2082 chr2R 17885087 17885139 chr2R 17885207 17885256 13 118 35.5 34.0 34.8 0.4 169 chr2R 17885087 intron Elk + chr2R 17885172 intron Elk + chr2R 17885256 intron Elk + chr2R_13_17885001 chr2R_17885001 RAL-303_100b 2083 chr2R 17897435 17897486 chr2R 17897576 17897610 24 137 38.5 28.5 33.5 0.7 175 chr2R 17897435 intron Elk + chr2R 17897522 intron Elk + chr2R 17897610 intron Elk + chr2R_24_17895001 chr2R_17895001 RAL-303_100b 2084 chr2R 17911580 17911625 chr2R 17911681 17911726 6 101 21.5 35.0 28.2 0.2 146 chr2R 17911580 intron Elk + chr2R 17911653 intron Elk + chr2R 17911726 intron Elk + chr2R_6_17910001 chr2R_17910001 RAL-303_100b 2085 chr2R 17918149 17918160 chr2R 17918246 17918262 9 98 53.0 37.0 45.0 0.2 113 chr2R 17918149 intron Elk + chr2R 17918206 intron Elk + chr2R 17918262 intron Elk + chr2R_9_17915001 chr2R_17915001 RAL-303_100b 2086 chr2R 17918161 17918184 chr2R 17918242 17918259 11 90 41.5 36.0 38.8 0.3 98 chr2R 17918161 intron Elk + chr2R 17918210 intron Elk + chr2R 17918259 intron Elk + chr2R_11_17915001 chr2R_17915001 RAL-303_100b 2087 chr2R 17921430 17921469 chr2R 17921537 17921576 8 107 6.0 20.0 13.0 0.6 146 chr2R 17921430 intron Elk + chr2R 17921503 intron Elk + chr2R 17921576 intron Elk + chr2R_8_17920001 chr2R_17920001 RAL-303_100b 2088 chr2R 17929106 17929148 chr2R 17929218 17929266 26 108 11.0 8.0 9.5 2.5 160 chr2R 17929106 intergenic not near genes chr2R 17929186 intergenic not near genes chr2R 17929266 intergenic not near genes chr2R_26_17925001 chr2R_17925001 RAL-303_100b 2089 chr2R 17937493 17937550 chr2R 17937598 17937655 27 101 48.0 45.0 46.5 0.6 162 chr2R 17937493 intergenic not near genes chr2R 17937574 intergenic not near genes chr2R 17937655 intergenic not near genes chr2R_27_17935001 chr2R_17935001 RAL-303_100b 2090 chr2R 17966137 17966156 chr2R 17966243 17966262 4 104 37.5 27.5 32.5 0.1 125 chr2R 17966137 intergenic not near genes chr2R 17966200 intergenic not near genes chr2R 17966262 intergenic not near genes chr2R_4_17965001 chr2R_17965001 RAL-303_100b 2091 chr2R 17966157 17966173 chr2R 17966232 17966279 5 91 27.5 26.5 27.0 0.2 122 chr2R 17966157 intergenic not near genes chr2R 17966218 intergenic not near genes chr2R 17966279 intergenic not near genes chr2R_5_17965001 chr2R_17965001 RAL-303_100b 2092 chr2R 17982902 17982953 chr2R 17983012 17983063 25 108 37.0 43.0 40.0 0.6 161 chr2R 17982902 intron dpr13 - chr2R 17982982 intron dpr13 - chr2R 17983063 intron dpr13 - chr2R_25_17980001 chr2R_17980001 RAL-303_100b 2093 chr2R 17984645 17984670 chr2R 17984752 17984777 11 107 37.0 30.0 33.5 0.3 132 chr2R 17984645 intron dpr13 - chr2R 17984711 intron dpr13 - chr2R 17984777 intron dpr13 - chr2R_11_17980001 chr2R_17980001 RAL-303_100b 2094 chr2R 18009767 18009796 chr2R 18009868 18009887 16 96 18.0 15.5 16.8 0.9 120 chr2R 18009767 intergenic not near genes chr2R 18009827 intergenic not near genes chr2R 18009887 intergenic not near genes chr2R_16_18005001 chr2R_18005001 RAL-303_100b 2095 chr2R 18042811 18042997 chr2R 18042938 18043110 8 118 24.0 22.5 23.2 0.3 299 chr2R 18042811 3` UTR CG5773 - chr2R 18042960 3` UTR CG5773 - chr2R 18043110 3` UTR CG5773 - chr2R_8_18040001 chr2R_18040001 RAL-303_100b 2096 chr2R 18045646 18045700 chr2R 18046023 18046077 jockey 47 376 16.0 7.0 11.5 3.8 431 chr2R 18045646 intergenic not near genes chr2R 18045862 intergenic not near genes chr2R 18046077 intergenic CG5767 - chr2R_47_18045001 chr2R_18045001 RAL-303_100b 2097 chr2R 18053544 18053564 chr2R 18053622 18053650 14 93 29.5 50.0 39.8 0.3 106 chr2R 18053544 intron CG10911 - chr2R 18053597 intron CG10911 - chr2R 18053650 exon CG10911 - chr2R_14_18050001 chr2R_18050001 RAL-303_100b 2098 chr2R 18074583 18074623 chr2R 18074684 18074724 11 101 35.0 30.5 32.8 0.3 141 chr2R 18074583 intron CG34386 + chr2R 18074654 intron CG34386 + chr2R 18074724 intron CG34386 + chr2R_11_18070001 chr2R_18070001 RAL-303_100b 2099 chr2R 18111658 18111716 chr2R 18115551 18115587 F-element 32 3892 11.0 11.0 11.0 2.7 3929 chr2R 18111658 intergenic not near genes chr2R 18113622 intergenic not near genes chr2R 18115587 intergenic not near genes chr2R_32_18110001 chr2R_18110001 RAL-303_100b 2100 chr2R 18141852 18141861 chr2R 18141965 18141974 4 112 41.5 39.5 40.5 0.1 122 chr2R 18141852 intron pAbp + chr2R 18141913 intron pAbp + chr2R 18141974 intron pAbp + chr2R_4_18140001 chr2R_18140001 RAL-303_100b 2101 chr2R 18144824 18144870 chr2R 18144971 18145017 6 141 87.5 68.0 77.8 0.1 193 chr2R 18144824 exon pAbp + chr2R 18144920 intron pAbp + chr2R 18145017 exon pAbp + chr2R_6_18140001 chr2R_18140001 RAL-303_100b 2102 chr2R 18187643 18187681 chr2R 18187882 18187920 15 238 45.5 48.5 47.0 0.3 277 chr2R 18187643 intron CG33958 - chr2R 18187782 intron,exon CG33958 -,CG14499 + chr2R 18187920 intron,exon CG33958 -,CG14499 + chr2R_15_18185001 chr2R_18185001 RAL-303_100b 2103 chr2R 18195179 18195225 chr2R 18195292 18195338 12 113 1.0 10.0 5.5 1.8 159 chr2R 18195179 intergenic not near genes chr2R 18195258 intergenic not near genes chr2R 18195338 intergenic not near genes chr2R_12_18195001 chr2R_18195001 RAL-303_100b 2104 chr2R 18210757 18210801 chr2R 18210891 18210942 26 135 43.0 40.5 41.8 0.6 185 chr2R 18210757 5` UTR CR45147 + chr2R 18210850 intergenic CR45147 + chr2R 18210942 intergenic CR45147 + chr2R_26_18210001 chr2R_18210001 RAL-303_100b 2105 chr2R 18219611 18219658 chr2R 18219718 18219765 26 104 43.5 48.5 46.0 0.6 154 chr2R 18219611 intergenic not near genes chr2R 18219688 intergenic not near genes chr2R 18219765 intergenic not near genes chr2R_26_18215001 chr2R_18215001 RAL-303_100b 2106 chr2R 18260855 18260867 chr2R 18261025 18261037 8 170 14.5 0.0 7.2 1.0 182 chr2R 18260855 intergenic not near genes chr2R 18260946 intergenic not near genes chr2R 18261037 intergenic not near genes chr2R_8_18260001 chr2R_18260001 RAL-303_100b 2107 chr2R 18308263 18308319 chr2R 18308394 18308450 21 129 39.0 44.0 41.5 0.5 187 chr2R 18308263 intron sbb - chr2R 18308356 intron sbb - chr2R 18308450 intron sbb - chr2R_21_18305001 chr2R_18305001 RAL-303_100b 2108 chr2R 18343438 18343461 chr2R 18343546 18343546 10 105 38.0 21.5 29.8 0.3 108 chr2R 18343438 intron sbb - chr2R 18343492 intron sbb - chr2R 18343546 intron sbb - chr2R_10_18340001 chr2R_18340001 RAL-303_100b 2109 chr2R 18358362 18358417 chr2R 18372599 18372654 roo 42 14235 17.5 9.5 13.5 2.9 14292 chr2R 18358362 intergenic not near genes chr2R 18365508 intergenic not near genes chr2R 18372654 intergenic not near genes chr2R_42_18365001 chr2R_18365001 RAL-303_100b 2110 chr2R 18376710 18376764 chr2R 18376825 18376879 18 113 44.5 49.5 47.0 0.4 169 chr2R 18376710 intergenic not near genes chr2R 18376794 intergenic not near genes chr2R 18376879 intergenic not near genes chr2R_18_18375001 chr2R_18375001 RAL-303_100b 2111 chr2R 18391957 18391992 chr2R 18392053 18392085 12 102 33.0 25.5 29.2 0.4 128 chr2R 18391957 intergenic not near genes chr2R 18392021 intergenic not near genes chr2R 18392085 intergenic not near genes chr2R_12_18390001 chr2R_18390001 RAL-303_100b 2112 chr2R 18398146 18398189 chr2R 18398263 18398308 10 118 49.0 41.5 45.2 0.2 162 chr2R 18398146 intron GstE10 - chr2R 18398227 intron GstE10 - chr2R 18398308 intron GstE10 - chr2R_10_18395001 chr2R_18395001 RAL-303_100b 2113 chr2R 18401652 18401710 chr2R 18402431 18402489 10 781 87.5 94.0 90.8 0.1 837 chr2R 18401652 intergenic GstE3 + chr2R 18402070 intergenic not near genes chr2R 18402489 intergenic not near genes chr2R_10_18400001 chr2R_18400001 RAL-303_100b 2114 chr2R 18405724 18405788 chr2R 18405830 18405893 21 103 11.0 8.0 9.5 2.0 169 chr2R 18405724 intergenic GstE6 +,GstE5 + chr2R 18405808 intergenic GstE6 +,GstE5 + chr2R 18405893 intergenic GstE6 + chr2R_21_18405001 chr2R_18405001 RAL-303_100b 2115 chr2R 18407203 18407258 chr2R 18407313 18407368 31 104 33.5 41.5 37.5 0.8 165 chr2R 18407203 exon GstE7 + chr2R 18407286 exon GstE7 + chr2R 18407368 exon GstE7 + chr2R_31_18405001 chr2R_18405001 RAL-303_100b 2116 chr2R 18408261 18408314 chr2R 18408407 18408460 32 142 40.0 35.0 37.5 0.8 199 chr2R 18408261 exon GstE8 + chr2R 18408360 exon GstE8 + chr2R 18408460 exon GstE8 + chr2R_32_18405001 chr2R_18405001 RAL-303_100b 2117 chr2R 18425091 18425127 chr2R 18425192 18425228 25 99 57.0 55.5 56.2 0.4 137 chr2R 18425091 intron CG5174 + chr2R 18425160 intron CG5174 + chr2R 18425228 intron CG5174 + chr2R_25_18425001 chr2R_18425001 RAL-303_100b 2118 chr2R 18463673 18463688 chr2R 18463799 18463814 4 126 37.5 38.0 37.8 0.1 141 chr2R 18463673 intron CG30116 - chr2R 18463744 intron CG30116 - chr2R 18463814 intron CG30116 - chr2R_4_18460001 chr2R_18460001 RAL-303_100b 2119 chr2R 18480435 18480486 chr2R 18480567 18480618 21 132 0.0 0.0 0.0 21.0 183 chr2R 18480435 intron CG30116 - chr2R 18480526 intron CG30116 - chr2R 18480618 intron CG30116 - chr2R_21_18480001 chr2R_18480001 RAL-303_100b 2120 chr2R 18487813 18487853 chr2R 18495289 18495348 blood 23 7480 1.0 10.0 5.5 3.5 7535 chr2R 18487813 intron CG30116 - chr2R 18491580 intron CG30116 - chr2R 18495348 intron CG30116 - chr2R_23_18490001 chr2R_18490001 RAL-303_100b 2121 chr2R 18508503 18508563 chr2R 18508742 18508788 12 228 41.5 26.0 33.8 0.3 285 chr2R 18508503 intergenic not near genes chr2R 18508646 intergenic not near genes chr2R 18508788 intergenic not near genes chr2R_12_18505001 chr2R_18505001 RAL-303_100b 2122 chr2R 18511563 18511615 chr2R 18511675 18511726 16 110 10.5 5.0 7.8 1.8 163 chr2R 18511563 intergenic not near genes chr2R 18511644 intergenic not near genes chr2R 18511726 intergenic not near genes chr2R_16_18510001 chr2R_18510001 RAL-303_100b 2123 chr2R 18513418 18513470 chr2R 18513911 18513957 24 493 6.5 2.5 4.5 4.4 539 chr2R 18513418 intergenic not near genes chr2R 18513688 intergenic not near genes chr2R 18513957 intergenic not near genes chr2R_24_18510001 chr2R_18510001 RAL-303_100b 2124 chr2R 18519921 18519974 chr2R 18520023 18520059 33 97 35.0 37.0 36.0 0.9 138 chr2R 18519921 intron CG43066 + chr2R 18519990 intron CG43066 + chr2R 18520059 intron CG43066 + chr2R_33_18515001 chr2R_18515001 RAL-303_100b 2125 chr2R 18550554 18550610 chr2R 18550668 18550724 59 110 12.0 16.0 14.0 3.9 170 chr2R 18550554 intergenic not near genes chr2R 18550639 intergenic not near genes chr2R 18550724 intergenic not near genes chr2R_59_18550001 chr2R_18550001 RAL-303_100b 2126 chr2R 18575127 18575165 chr2R 18575369 18575407 19 240 33.0 33.0 33.0 0.6 280 chr2R 18575127 intron GEFmeso - chr2R 18575267 intron GEFmeso - chr2R 18575407 intron GEFmeso - chr2R_19_18575001 chr2R_18575001 RAL-303_100b 2127 chr2R 18575770 18575830 chr2R 18581983 18582043 3S18 50 6202 15.5 13.5 14.5 3.2 6273 chr2R 18575770 intron GEFmeso - chr2R 18578906 intron GEFmeso - chr2R 18582043 intron GEFmeso - chr2R_50_18575001 chr2R_18575001 RAL-303_100b 2128 chr2R 18585783 18585794 chr2R 18585886 18585896 6 103 63.0 49.0 56.0 0.1 113 chr2R 18585783 intron GEFmeso - chr2R 18585840 intron GEFmeso - chr2R 18585896 intron GEFmeso - chr2R_6_18585001 chr2R_18585001 RAL-303_100b 2129 chr2R 18585795 18585819 chr2R 18585882 18585922 26 100 58.5 49.0 53.8 0.5 127 chr2R 18585795 intron GEFmeso - chr2R 18585858 intron GEFmeso - chr2R 18585922 intron GEFmeso - chr2R_26_18585001 chr2R_18585001 RAL-303_100b 2130 chr2R 18590843 18590881 chr2R 18600020 18600058 roo 41 9175 21.5 15.5 18.5 2.1 9215 chr2R 18590843 intron GEFmeso - chr2R 18595450 intron GEFmeso - chr2R 18600058 intron GEFmeso - chr2R_41_18595001 chr2R_18595001 RAL-303_100b 2131 chr2R 18590882 18590901 chr2R 18600017 18600057 roo 23 9172 14.0 12.0 13.0 1.6 9175 chr2R 18590882 intron GEFmeso - chr2R 18595470 intron GEFmeso - chr2R 18600057 intron GEFmeso - chr2R_23_18595001 chr2R_18595001 RAL-303_100b 2132 chr2R 18601106 18601164 chr2R 18601208 18601255 31 99 59.0 54.0 56.5 0.5 149 chr2R 18601106 intron GEFmeso - chr2R 18601180 intron GEFmeso - chr2R 18601255 intron GEFmeso - chr2R_31_18600001 chr2R_18600001 RAL-303_100b 2133 chr2R 18605107 18605158 chr2R 18605224 18605263 17 112 28.0 18.5 23.2 0.7 156 chr2R 18605107 intron GEFmeso - chr2R 18605185 intron GEFmeso - chr2R 18605263 intron GEFmeso - chr2R_17_18605001 chr2R_18605001 RAL-303_100b 2134 chr2R 18738184 18738239 chr2R 18738285 18738340 26 100 27.5 36.0 31.8 0.8 156 chr2R 18738184 intron Hs3st-A + chr2R 18738262 intron Hs3st-A + chr2R 18738340 intron Hs3st-A + chr2R_26_18735001 chr2R_18735001 RAL-303_100b 2135 chr2R 18769600 18769732 chr2R 18769732 18769964 15 258 0.0 0.0 0.0 15.0 364 chr2R 18769600 intron Mctp + chr2R 18769782 intron Mctp + chr2R 18769964 intron Mctp + chr2R_15_18765001 chr2R_18765001 RAL-303_100b 2136 chr2R 18778589 18778608 chr2R 18778712 18778731 10 123 24.0 22.5 23.2 0.4 142 chr2R 18778589 intergenic not near genes chr2R 18778660 intergenic not near genes chr2R 18778731 intergenic not near genes chr2R_10_18775001 chr2R_18775001 RAL-303_100b 2137 chr2R 18782185 18782205 chr2R 18782288 18782311 8 102 38.0 14.5 26.2 0.3 126 chr2R 18782185 intergenic not near genes chr2R 18782248 intergenic not near genes chr2R 18782311 intergenic not near genes chr2R_8_18780001 chr2R_18780001 RAL-303_100b 2138 chr2R 18808131 18808188 chr2R 18808232 18808283 29 100 12.0 6.5 9.2 2.8 152 chr2R 18808131 intergenic CG15096 - chr2R 18808207 intergenic CG15096 - chr2R 18808283 intergenic CG15096 - chr2R_29_18805001 chr2R_18805001 RAL-303_100b 2139 chr2R 18812053 18812112 chr2R 18812156 18812190 35 101 48.0 46.0 47.0 0.7 137 chr2R 18812053 intron CG15096 - chr2R 18812122 intron CG15096 - chr2R 18812190 intron CG15096 - chr2R_35_18810001 chr2R_18810001 RAL-303_100b 2140 chr2R 18827695 18827724 chr2R 18827794 18827829 15 105 36.0 45.5 40.8 0.4 134 chr2R 18827695 intron CG15097 - chr2R 18827762 intron CG15097 - chr2R 18827829 intron CG15097 - chr2R_15_18825001 chr2R_18825001 RAL-303_100b 2141 chr2R 18835866 18835912 chr2R 18835973 18836016 11 103 11.0 1.0 6.0 1.6 150 chr2R 18835866 intron CG15083 + chr2R 18835941 intron CG15083 + chr2R 18836016 intron CG15083 + chr2R_11_18835001 chr2R_18835001 RAL-303_100b 2142 chr2R 18862288 18862347 chr2R 18862400 18862484 8 127 22.5 28.0 25.2 0.3 196 chr2R 18862288 intergenic Jheh3 - chr2R 18862386 intergenic Jheh3 -,CG43069 + chr2R 18862484 intergenic CG43069 +,Jheh3 - chr2R_8_18860001 chr2R_18860001 RAL-303_100b 2143 chr2R 18892327 18892379 chr2R 18892546 18892567 14 215 47.0 37.5 42.2 0.3 240 chr2R 18892327 intron sano + chr2R 18892447 intron sano + chr2R 18892567 intron sano + chr2R_14_18890001 chr2R_18890001 RAL-303_100b 2144 chr2R 18924268 18924300 chr2R 18924357 18924405 16 104 42.0 40.0 41.0 0.4 137 chr2R 18924268 intron sano + chr2R 18924336 intron sano + chr2R 18924405 intron sano + chr2R_16_18920001 chr2R_18920001 RAL-303_100b 2145 chr2R 18926481 18926527 chr2R 18926593 18926639 20 110 15.0 7.0 11.0 1.7 158 chr2R 18926481 intron sano + chr2R 18926560 intron sano + chr2R 18926639 intron sano + chr2R_20_18925001 chr2R_18925001 RAL-303_100b 2146 chr2R 18929080 18929127 chr2R 18929183 18929230 23 101 39.5 38.5 39.0 0.6 150 chr2R 18929080 intron sano + chr2R 18929155 intron sano + chr2R 18929230 intron sano + chr2R_23_18925001 chr2R_18925001 RAL-303_100b 2147 chr2R 18949303 18949341 chr2R 18949421 18949459 16 116 23.5 16.0 19.8 0.8 156 chr2R 18949303 intron sano + chr2R 18949381 intron sano + chr2R 18949459 intron sano + chr2R_16_18945001 chr2R_18945001 RAL-303_100b 2148 chr2R 18953140 18953188 chr2R 18953252 18953300 24 111 41.0 35.0 38.0 0.6 160 chr2R 18953140 intron sano + chr2R 18953220 intron sano + chr2R 18953300 intron sano + chr2R_24_18950001 chr2R_18950001 RAL-303_100b 2149 chr2R 18988994 18989046 chr2R 18989097 18989149 31 102 40.0 44.5 42.2 0.7 155 chr2R 18988994 intron tn + chr2R 18989072 intron tn + chr2R 18989149 intron tn + chr2R_31_18985001 chr2R_18985001 RAL-303_100b 2150 chr2R 19007089 19007132 chr2R 19007203 19007247 26 114 40.0 41.0 40.5 0.6 158 chr2R 19007089 intron tn + chr2R 19007168 intron tn + chr2R 19007247 intron tn + chr2R_26_19005001 chr2R_19005001 RAL-303_100b 2151 chr2R 19012919 19012965 chr2R 19013038 19013084 22 117 36.5 43.5 40.0 0.5 165 chr2R 19012919 intergenic not near genes chr2R 19013002 intergenic not near genes chr2R 19013084 intergenic not near genes chr2R_22_19010001 chr2R_19010001 RAL-303_100b 2152 chr2R 19025282 19025332 chr2R 19025541 19025580 11 254 38.5 40.5 39.5 0.3 298 chr2R 19025282 intron 5-HT1B - chr2R 19025431 intron 5-HT1B - chr2R 19025580 intron 5-HT1B - chr2R_11_19025001 chr2R_19025001 RAL-303_100b 2153 chr2R 19026025 19026061 chr2R 19026151 19026187 24 126 20.0 7.0 13.5 1.7 162 chr2R 19026025 intron 5-HT1B - chr2R 19026106 intron 5-HT1B - chr2R 19026187 intron 5-HT1B - chr2R_24_19025001 chr2R_19025001 RAL-303_100b 2154 chr2R 19039434 19039489 chr2R 19039549 19039599 24 111 31.0 35.0 33.0 0.7 165 chr2R 19039434 intergenic not near genes chr2R 19039516 intergenic not near genes chr2R 19039599 intergenic not near genes chr2R_24_19035001 chr2R_19035001 RAL-303_100b 2155 chr2R 19042679 19042690 chr2R 19042783 19042794 15 101 44.5 40.5 42.5 0.3 115 chr2R 19042679 intergenic not near genes chr2R 19042736 intergenic not near genes chr2R 19042794 intergenic not near genes chr2R_15_19040001 chr2R_19040001 RAL-303_100b 2156 chr2R 19042691 19042698 chr2R 19042781 19042802 9 100 41.0 39.0 40.0 0.2 111 chr2R 19042691 intergenic not near genes chr2R 19042746 intergenic not near genes chr2R 19042802 intergenic not near genes chr2R_9_19040001 chr2R_19040001 RAL-303_100b 2157 chr2R 19048284 19048338 chr2R 19048406 19048460 26 122 34.5 44.5 39.5 0.6 176 chr2R 19048284 intergenic not near genes chr2R 19048372 intergenic not near genes chr2R 19048460 intergenic not near genes chr2R_26_19045001 chr2R_19045001 RAL-303_100b 2158 chr2R 19067698 19067746 chr2R 19067799 19067847 19 99 37.0 31.5 34.2 0.5 149 chr2R 19067698 intron 5-HT1A + chr2R 19067772 intron 5-HT1A + chr2R 19067847 intron 5-HT1A + chr2R_19_19065001 chr2R_19065001 RAL-303_100b 2159 chr2R 19103385 19103427 chr2R 19103500 19103529 15 109 16.5 2.0 9.2 1.5 144 chr2R 19103385 intron 5-HT1A + chr2R 19103457 intron 5-HT1A + chr2R 19103529 intron 5-HT1A + chr2R_15_19100001 chr2R_19100001 RAL-303_100b 2160 chr2R 19168713 19168765 chr2R 19168819 19168873 19 106 36.0 34.0 35.0 0.5 160 chr2R 19168713 intron CG10737 + chr2R 19168793 intron CG10737 + chr2R 19168873 intron CG10737 + chr2R_19_19165001 chr2R_19165001 RAL-303_100b 2161 chr2R 19177848 19177902 chr2R 19177952 19177986 25 90 43.0 37.5 40.2 0.6 138 chr2R 19177848 exon CG10737 + chr2R 19177917 3` UTR CG10737 + chr2R 19177986 3` UTR CG10737 + chr2R_25_19175001 chr2R_19175001 RAL-303_100b 2162 chr2R 19206465 19206498 chr2R 21470028 21470029 4 2263547 48.5 24.5 36.5 0.1 2263564 chr2R 19206465 intron hppy + chr2R 20338247 intergenic not near genes chr2R 21470029 intron Sdc - chr2R_4_20335001 chr2R_20335001 RAL-303_100b 2163 chr2R 19208048 19208061 chr2R 19208164 19208177 5 114 51.0 38.0 44.5 0.1 129 chr2R 19208048 intron hppy + chr2R 19208112 intron hppy + chr2R 19208177 intron hppy + chr2R_5_19205001 chr2R_19205001 RAL-303_100b 2164 chr2R 19208063 19208076 chr2R 19208162 19208192 6 112 48.5 37.5 43.0 0.1 129 chr2R 19208063 intron hppy + chr2R 19208128 intron hppy + chr2R 19208192 intron hppy + chr2R_6_19205001 chr2R_19205001 RAL-303_100b 2165 chr2R 19244459 19244466 chr2R 19244558 19244570 5 102 12.0 29.0 20.5 0.2 111 chr2R 19244459 intergenic not near genes chr2R 19244514 intergenic not near genes chr2R 19244570 intergenic not near genes chr2R_5_19240001 chr2R_19240001 RAL-303_100b 2166 chr2R 19296423 19296473 chr2R 19296524 19296574 35 99 4.5 10.0 7.2 4.3 151 chr2R 19296423 intron Tab2 + chr2R 19296498 intron Tab2 + chr2R 19296574 intron Tab2 + chr2R_35_19295001 chr2R_19295001 RAL-303_100b 2167 chr2R 19300937 19300995 chr2R 19301045 19301096 22 108 34.5 42.5 38.5 0.6 159 chr2R 19300937 intron Tab2 + chr2R 19301016 intron Tab2 + chr2R 19301096 intron Tab2 + chr2R_22_19300001 chr2R_19300001 RAL-303_100b 2168 chr2R 19331207 19331247 chr2R 19331312 19331343 12 102 56.5 47.5 52.0 0.2 136 chr2R 19331207 intron,intron Rgk1 -,CG34045 + chr2R 19331275 intron,intron Rgk1 -,CG34045 + chr2R 19331343 intron,intron Rgk1 -,CG34045 + chr2R_12_19330001 chr2R_19330001 RAL-303_100b 2169 chr2R 19376110 19376148 chr2R 19376328 19376339 14 214 7.5 14.5 11.0 1.2 229 chr2R 19376110 intron CG10062 + chr2R 19376224 intron CG10062 + chr2R 19376339 intron CG10062 + chr2R_14_19375001 chr2R_19375001 RAL-303_100b 2170 chr2R 19389901 19389959 chr2R 19390005 19390063 17 102 23.5 30.5 27.0 0.6 162 chr2R 19389901 intergenic CG11257 + chr2R 19389982 intergenic CG11257 + chr2R 19390063 intergenic CG11257 + chr2R_17_19385001 chr2R_19385001 RAL-303_100b 2171 chr2R 19535073 19535130 chr2R 19535315 19535366 26 239 41.0 39.5 40.2 0.6 293 chr2R 19535073 intron sm - chr2R 19535220 intron sm - chr2R 19535366 intron sm - chr2R_26_19535001 chr2R_19535001 RAL-303_100b 2172 chr2R 19536455 19536498 chr2R 19536552 19536605 19 106 37.5 35.5 36.5 0.5 150 chr2R 19536455 intron sm - chr2R 19536530 intron sm - chr2R 19536605 intron sm - chr2R_19_19535001 chr2R_19535001 RAL-303_100b 2173 chr2R 19555555 19555612 chr2R 19555664 19555721 21 108 44.5 46.0 45.2 0.5 166 chr2R 19555555 intron sm - chr2R 19555638 intron sm - chr2R 19555721 intron sm - chr2R_21_19555001 chr2R_19555001 RAL-303_100b 2174 chr2R 19575544 19575579 chr2R 19575646 19575682 24 102 40.0 41.0 40.5 0.6 138 chr2R 19575544 intron sm - chr2R 19575613 intron sm - chr2R 19575682 intron sm - chr2R_24_19575001 chr2R_19575001 RAL-303_100b 2175 chr2R 19603948 19604008 chr2R 19604057 19604106 27 107 41.0 39.0 40.0 0.7 158 chr2R 19603948 intron sm - chr2R 19604027 intron sm - chr2R 19604106 intron sm - chr2R_27_19600001 chr2R_19600001 RAL-303_100b 2176 chr2R 19639567 19639599 chr2R 19639668 19639699 21 100 49.0 58.5 53.8 0.4 132 chr2R 19639567 intergenic not near genes chr2R 19639633 intergenic not near genes chr2R 19639699 intergenic not near genes chr2R_21_19635001 chr2R_19635001 RAL-303_100b 2177 chr2R 19641756 19641803 chr2R 19641886 19641932 24 128 11.0 21.0 16.0 1.4 176 chr2R 19641756 intergenic not near genes chr2R 19641844 intergenic not near genes chr2R 19641932 intergenic not near genes chr2R_24_19640001 chr2R_19640001 RAL-303_100b 2178 chr2R 19644639 19644688 chr2R 19644750 19644799 29 109 43.5 49.0 46.2 0.6 160 chr2R 19644639 intergenic not near genes chr2R 19644719 intergenic not near genes chr2R 19644799 intergenic not near genes chr2R_29_19640001 chr2R_19640001 RAL-303_100b 2179 chr2R 19699873 19699930 chr2R 19699983 19700040 13 110 13.0 14.5 13.8 0.9 167 chr2R 19699873 intergenic Obp56c - chr2R 19699956 intergenic Obp56c - chr2R 19700040 3` UTR Obp56c - chr2R_13_19695001 chr2R_19695001 RAL-303_100b 2180 chr2R 19715832 19715857 chr2R 19723326 19723351 blood 30 7491 32.5 21.0 26.8 1.1 7519 chr2R 19715832 intergenic not near genes chr2R 19719592 intergenic not near genes chr2R 19723351 intergenic not near genes chr2R_30_19715001 chr2R_19715001 RAL-303_100b 2181 chr2R 19773984 19774040 chr2R 19774122 19774178 45 137 4.0 14.5 9.2 4.4 194 chr2R 19773984 intergenic not near genes chr2R 19774081 intergenic not near genes chr2R 19774178 intergenic not near genes chr2R_45_19770001 chr2R_19770001 RAL-303_100b 2182 chr2R 19776571 19776603 chr2R 19779919 19779951 jockey 35 3346 27.0 23.5 25.2 1.3 3380 chr2R 19776571 intergenic not near genes chr2R 19778261 intergenic not near genes chr2R 19779951 intergenic not near genes chr2R_35_19775001 chr2R_19775001 RAL-303_100b 2183 chr2R 19776604 19776623 chr2R 19779917 19779971 jockey 20 3344 17.5 22.0 19.8 1.0 3367 chr2R 19776604 intergenic not near genes chr2R 19778288 intergenic not near genes chr2R 19779971 intergenic not near genes chr2R_20_19775001 chr2R_19775001 RAL-303_100b 2184 chr2R 19802000 19802024 chr2R 19802237 19802256 11 235 20.0 12.5 16.2 0.6 256 chr2R 19802000 intergenic not near genes chr2R 19802128 intergenic not near genes chr2R 19802256 intergenic not near genes chr2R_11_19800001 chr2R_19800001 RAL-303_100b 2185 chr2R 19807646 19807703 chr2R 19807753 19807810 59 104 11.5 13.0 12.2 4.5 164 chr2R 19807646 intergenic not near genes chr2R 19807728 intergenic not near genes chr2R 19807810 intergenic not near genes chr2R_59_19805001 chr2R_19805001 RAL-303_100b 2186 chr2R 19810623 19810688 chr2R 19810768 19810824 9 140 44.5 49.0 46.8 0.2 201 chr2R 19810623 intergenic not near genes chr2R 19810724 intergenic not near genes chr2R 19810824 intergenic not near genes chr2R_9_19810001 chr2R_19810001 RAL-303_100b 2187 chr2R 19914823 19914873 chr2R 19922260 19922310 mdg1 15 7437 40.0 22.5 31.2 0.5 7487 chr2R 19914823 intergenic not near genes chr2R 19918566 intergenic not near genes chr2R 19922310 intergenic not near genes chr2R_15_19915001 chr2R_19915001 RAL-303_100b 2188 chr2R 19957406 19957462 chr2R 19962633 19962688 copia 45 5223 12.0 17.5 14.8 2.8 5282 chr2R 19957406 intergenic CG44623 + chr2R 19960047 intergenic not near genes chr2R 19962688 intergenic not near genes chr2R_45_19960001 chr2R_19960001 RAL-303_100b 2189 chr2R 20008162 20008212 chr2R 20008276 20008316 21 112 48.5 53.0 50.8 0.4 154 chr2R 20008162 intergenic not near genes chr2R 20008239 intergenic not near genes chr2R 20008316 intergenic not near genes chr2R_21_20005001 chr2R_20005001 RAL-303_100b 2190 chr2R 20008868 20008920 chr2R 20008975 20009027 20 103 39.0 40.0 39.5 0.5 159 chr2R 20008868 intergenic not near genes chr2R 20008948 intergenic not near genes chr2R 20009027 intergenic not near genes chr2R_20_20005001 chr2R_20005001 RAL-303_100b 2191 chr2R 20012978 20012989 chr2R 20013088 20013099 7 110 45.5 37.0 41.2 0.2 121 chr2R 20012978 intergenic not near genes chr2R 20013038 intergenic not near genes chr2R 20013099 intergenic not near genes chr2R_7_20010001 chr2R_20010001 RAL-303_100b 2192 chr2R 20012990 20013028 chr2R 20013084 20013138 16 103 38.0 35.5 36.8 0.4 148 chr2R 20012990 intergenic not near genes chr2R 20013064 intergenic not near genes chr2R 20013138 intergenic not near genes chr2R_16_20010001 chr2R_20010001 RAL-303_100b 2193 chr2R 20069208 20069246 chr2R 20071872 20071911 opus 21 2664 0.5 8.0 4.2 4.0 2703 chr2R 20069208 intergenic not near genes chr2R 20070560 intergenic not near genes chr2R 20071911 intergenic not near genes chr2R_21_20070001 chr2R_20070001 RAL-303_100b 2194 chr2R 20080607 20080625 chr2R 20080690 20080727 15 98 21.0 37.0 29.0 0.5 120 chr2R 20080607 intergenic not near genes chr2R 20080667 intergenic not near genes chr2R 20080727 intergenic not near genes chr2R_15_20080001 chr2R_20080001 RAL-303_100b 2195 chr2R 20088020 20088027 chr2R 20088152 20088160 1360 5 133 26.5 33.0 29.8 0.2 140 chr2R 20088020 intergenic not near genes chr2R 20088090 intergenic not near genes chr2R 20088160 intergenic not near genes chr2R_5_20085001 chr2R_20085001 RAL-303_100b 2196 chr2R 20125726 20125747 chr2R 20125817 20125848 19 100 7.5 22.5 15.0 1.2 122 chr2R 20125726 intergenic not near genes chr2R 20125787 intergenic not near genes chr2R 20125848 intergenic not near genes chr2R_19_20125001 chr2R_20125001 RAL-303_100b 2197 chr2R 20164206 20164251 chr2R 20164757 20164802 14 550 38.0 50.5 44.2 0.3 596 chr2R 20164206 intergenic not near genes chr2R 20164504 intergenic not near genes chr2R 20164802 intergenic not near genes chr2R_14_20160001 chr2R_20160001 RAL-303_100b 2198 chr2R 20199191 20199246 chr2R 20199293 20199348 24 100 33.5 36.5 35.0 0.7 157 chr2R 20199191 intergenic not near genes chr2R 20199270 intergenic not near genes chr2R 20199348 intergenic not near genes chr2R_24_20195001 chr2R_20195001 RAL-303_100b 2199 chr2R 20223925 20223986 chr2R 20224035 20224089 27 108 49.5 40.5 45.0 0.6 164 chr2R 20223925 intergenic not near genes chr2R 20224007 intergenic not near genes chr2R 20224089 intergenic not near genes chr2R_27_20220001 chr2R_20220001 RAL-303_100b 2200 chr2R 20226140 20226147 chr2R 20226254 20226261 4 114 43.5 4.5 24.0 0.2 121 chr2R 20226140 intergenic not near genes chr2R 20226200 intergenic not near genes chr2R 20226261 intergenic not near genes chr2R_4_20225001 chr2R_20225001 RAL-303_100b 2201 chr2R 12571237 12571238 chr2R 20250380 20250386 4 7679144 66.5 43.5 55.0 0.1 7679149 chr2R 12571237 intron stil + chr2R 16410812 intron Sema-2b + chr2R 20250386 intron CG9864 - chr2R_4_16410001 chr2R_16410001 RAL-303_100b 2202 chr2R 20334838 20334876 chr2R 20334941 20334961 16 97 30.5 22.5 26.5 0.6 123 chr2R 20334838 intergenic not near genes chr2R 20334900 intergenic not near genes chr2R 20334961 intergenic not near genes chr2R_16_20330001 chr2R_20330001 RAL-303_100b 2203 chr2R 20337172 20337223 chr2R 20337284 20337337 13 114 35.5 33.0 34.2 0.4 165 chr2R 20337172 intergenic not near genes chr2R 20337254 intergenic not near genes chr2R 20337337 intergenic not near genes chr2R_13_20335001 chr2R_20335001 RAL-303_100b 2204 chr2R 20368491 20368496 chr2R 20377679 20377684 roo 6 9188 35.0 22.5 28.8 0.2 9193 chr2R 20368491 intergenic not near genes chr2R 20373088 intergenic not near genes chr2R 20377684 intergenic not near genes chr2R_6_20370001 chr2R_20370001 RAL-303_100b 2205 chr2R 20379132 20379140 chr2R 20379240 20379248 10 108 43.5 23.5 33.5 0.3 116 chr2R 20379132 intergenic not near genes chr2R 20379190 intergenic not near genes chr2R 20379248 intergenic not near genes chr2R_10_20375001 chr2R_20375001 RAL-303_100b 2206 chr2R 20382316 20382358 chr2R 20382420 20382468 19 106 42.5 29.5 36.0 0.5 152 chr2R 20382316 intergenic not near genes chr2R 20382392 intergenic not near genes chr2R 20382468 intergenic not near genes chr2R_19_20380001 chr2R_20380001 RAL-303_100b 2207 chr2R 20442944 20442972 chr2R 20443066 20443094 8 123 93.5 116.0 104.8 0.1 150 chr2R 20442944 intron CG12484 + chr2R 20443019 intron CG12484 + chr2R 20443094 intron CG12484 + chr2R_8_20440001 chr2R_20440001 RAL-303_100b 2208 chr2R 20442943 20442981 chr2R 20443095 20443103 7 130 102.0 101.5 101.8 0.1 160 chr2R 20442943 intron CG12484 + chr2R 20443023 intron CG12484 + chr2R 20443103 intron CG12484 + chr2R_7_20440001 chr2R_20440001 RAL-303_100b 2209 chr2R 20449224 20449251 chr2R 20449317 20449352 13 98 24.0 28.0 26.0 0.5 128 chr2R 20449224 intron CG12484 + chr2R 20449288 intron CG12484 + chr2R 20449352 intron CG12484 + chr2R_13_20445001 chr2R_20445001 RAL-303_100b 2210 chr2R 4709385 4709385 chr2R 20468980 20468981 4 15759595 46.0 20.5 33.2 0.1 15759596 chr2R 4709385 intron Nipped-B - chr2R 12589183 intron Sin3A - chr2R 20468981 intron CG12484 + chr2R_4_12585001 chr2R_12585001 RAL-303_100b 2211 chr2R 20490030 20490086 chr2R 20490133 20490189 21 102 30.0 29.0 29.5 0.7 159 chr2R 20490030 intergenic not near genes chr2R 20490110 intergenic not near genes chr2R 20490189 intergenic not near genes chr2R_21_20490001 chr2R_20490001 RAL-303_100b 2212 chr2R 20502261 20502315 chr2R 20502400 20502454 49 137 9.5 13.5 11.5 3.9 193 chr2R 20502261 intergenic not near genes chr2R 20502358 intergenic not near genes chr2R 20502454 intergenic not near genes chr2R_49_20500001 chr2R_20500001 RAL-303_100b 2213 chr2R 20506203 20506243 chr2R 20506314 20506374 24 120 35.5 42.5 39.0 0.6 171 chr2R 20506203 3` UTR,5` UTR CR44644 -,CR44645 + chr2R 20506288 3` UTR,5` UTR CR44644 -,CR44645 + chr2R 20506374 3` UTR,5` UTR CR44644 -,CR44645 + chr2R_24_20505001 chr2R_20505001 RAL-303_100b 2214 chr2R 20506929 20506962 chr2R 20507036 20507063 5 103 0.0 10.5 5.2 0.8 134 chr2R 20506929 intergenic CR44645 + chr2R 20506996 intergenic CR44645 + chr2R 20507063 intergenic CR44645 + chr2R_5_20505001 chr2R_20505001 RAL-303_100b 2215 chr2R 20523014 20523018 chr2R 20523150 20523154 7 136 48.5 16.0 32.2 0.2 140 chr2R 20523014 intergenic not near genes chr2R 20523084 intergenic not near genes chr2R 20523154 intergenic not near genes chr2R_7_20520001 chr2R_20520001 RAL-303_100b 2216 chr2R 20523025 20523071 chr2R 20523149 20523187 41 131 14.0 14.0 14.0 2.7 162 chr2R 20523025 intergenic not near genes chr2R 20523106 intergenic not near genes chr2R 20523187 intergenic not near genes chr2R_41_20520001 chr2R_20520001 RAL-303_100b 2217 chr2R 20555338 20555348 chr2R 20555446 20555462 7 112 0.0 14.5 7.2 0.9 124 chr2R 20555338 intergenic not near genes chr2R 20555400 intergenic not near genes chr2R 20555462 intergenic not near genes chr2R_7_20555001 chr2R_20555001 RAL-303_100b 2218 chr2R 20568390 20568457 chr2R 20568492 20568562 18 104 44.5 42.5 43.5 0.4 172 chr2R 20568390 intron qsm - chr2R 20568476 intron qsm - chr2R 20568562 intron qsm - chr2R_18_20565001 chr2R_20565001 RAL-303_100b 2219 chr2R 20590069 20590108 chr2R 20590158 20590212 10 103 42.5 52.5 47.5 0.2 143 chr2R 20590069 intron bl + chr2R 20590140 intron bl + chr2R 20590212 intron bl + chr2R_10_20590001 chr2R_20590001 RAL-303_100b 2220 chr2R 20590652 20590669 chr2R 20590756 20590773 6 104 50.5 50.5 50.5 0.1 121 chr2R 20590652 intron bl + chr2R 20590712 intron bl + chr2R 20590773 intron bl + chr2R_6_20590001 chr2R_20590001 RAL-303_100b 2221 chr2R 20592565 20592587 chr2R 20592660 20592672 7 99 48.5 38.0 43.2 0.2 107 chr2R 20592565 intron bl + chr2R 20592618 intron bl + chr2R 20592672 intron bl + chr2R_7_20590001 chr2R_20590001 RAL-303_100b 2222 chr2R 20597773 20597819 chr2R 20597898 20597944 37 121 22.5 33.0 27.8 1.3 171 chr2R 20597773 intron bl + chr2R 20597858 intron bl + chr2R 20597944 intron bl + chr2R_37_20595001 chr2R_20595001 RAL-303_100b 2223 chr2R 20600228 20600452 chr2R 20600352 20600559 29 114 30.5 2.5 16.5 1.7 331 chr2R 20600228 intron bl + chr2R 20600394 intron bl + chr2R 20600559 intron bl + chr2R_29_20600001 chr2R_20600001 RAL-303_100b 2224 chr2R 20667341 20667359 chr2R 20667478 20667483 7 135 28.5 61.5 45.0 0.2 142 chr2R 20667341 intergenic Fem-1 -,exu - chr2R 20667412 intergenic exu -,Fem-1 - chr2R 20667483 3` UTR exu - chr2R_7_20665001 chr2R_20665001 RAL-303_100b 2225 chr2R 20694693 20694698 chr2R 20695114 20695120 7 422 2.0 37.0 19.5 0.3 427 chr2R 20694693 intergenic not near genes chr2R 20694906 intergenic not near genes chr2R 20695120 intergenic not near genes chr2R_7_20690001 chr2R_20690001 RAL-303_100b 2226 chr2R 20695418 20695425 chr2R 20695740 20695747 6 322 39.5 48.0 43.8 0.1 329 chr2R 20695418 intergenic not near genes chr2R 20695582 intergenic not near genes chr2R 20695747 intergenic not near genes chr2R_6_20695001 chr2R_20695001 RAL-303_100b 2227 chr2R 20695429 20695445 chr2R 20695736 20695767 10 318 34.5 41.5 38.0 0.3 338 chr2R 20695429 intergenic not near genes chr2R 20695598 intergenic not near genes chr2R 20695767 intergenic not near genes chr2R_10_20695001 chr2R_20695001 RAL-303_100b 2228 chr2R 20739421 20739447 chr2R 20744209 20744240 F-element 16 4792 19.5 13.5 16.5 0.9 4819 chr2R 20739421 intron dpr + chr2R 20741830 intron dpr + chr2R 20744240 intron dpr + chr2R_16_20740001 chr2R_20740001 RAL-303_100b 2229 chr2R 20739448 20739470 chr2R 20744208 20744263 F-element 21 4789 16.5 13.0 14.8 1.3 4815 chr2R 20739448 intron dpr + chr2R 20741856 intron dpr + chr2R 20744263 intron dpr + chr2R_21_20740001 chr2R_20740001 RAL-303_100b 2230 chr2R 20756908 20756942 chr2R 20756995 20757045 21 93 43.0 57.5 50.2 0.4 137 chr2R 20756908 intergenic not near genes chr2R 20756976 intergenic not near genes chr2R 20757045 intergenic not near genes chr2R_21_20755001 chr2R_20755001 RAL-303_100b 2231 chr2R 20757445 20757455 chr2R 20757547 20757557 4 102 52.0 56.5 54.2 0.1 112 chr2R 20757445 intergenic not near genes chr2R 20757501 intergenic not near genes chr2R 20757557 intergenic not near genes chr2R_4_20755001 chr2R_20755001 RAL-303_100b 2232 chr2R 20759788 20759818 chr2R 20759889 20759913 13 100 31.5 45.0 38.2 0.3 125 chr2R 20759788 intergenic not near genes chr2R 20759850 intergenic not near genes chr2R 20759913 intergenic not near genes chr2R_13_20755001 chr2R_20755001 RAL-303_100b 2233 chr2R 20771426 20771478 chr2R 20771706 20771753 31 277 38.0 42.0 40.0 0.8 327 chr2R 20771426 intergenic not near genes chr2R 20771590 intergenic not near genes chr2R 20771753 intergenic not near genes chr2R_31_20770001 chr2R_20770001 RAL-303_100b 2234 chr2R 20776509 20776559 chr2R 20776612 20776661 22 102 38.0 26.0 32.0 0.7 152 chr2R 20776509 intergenic CG43709 -,CG43710 - chr2R 20776585 intergenic CG43710 -,CG43709 - chr2R 20776661 intergenic CG43710 -,CG43709 - chr2R_22_20775001 chr2R_20775001 RAL-303_100b 2235 chr2R 20783287 20783331 chr2R 20788084 20788102 F-element 35 4794 11.5 21.5 16.5 2.0 4815 chr2R 20783287 intergenic not near genes chr2R 20785694 intergenic not near genes chr2R 20788102 intergenic CG43666 - chr2R_35_20785001 chr2R_20785001 RAL-303_100b 2236 chr2R 20817426 20817483 chr2R 20817829 20817886 26 397 37.5 29.5 33.5 0.8 460 chr2R 20817426 intergenic not near genes chr2R 20817656 intergenic not near genes chr2R 20817886 intergenic not near genes chr2R_26_20815001 chr2R_20815001 RAL-303_100b 2237 chr2R 20830511 20830568 chr2R 20830616 20830673 36 101 49.0 54.0 51.5 0.7 162 chr2R 20830511 intron,intron insc -,sktl - chr2R 20830592 intron,intron insc -,sktl - chr2R 20830673 intron,intron insc -,sktl - chr2R_36_20830001 chr2R_20830001 RAL-303_100b 2238 chr2R 20838058 20838084 chr2R 20838164 20838190 12 106 5.5 22.0 13.8 0.8 132 chr2R 20838058 intron CR44667 + chr2R 20838124 intron CR44667 + chr2R 20838190 intron CR44667 + chr2R_12_20835001 chr2R_20835001 RAL-303_100b 2239 chr2R 20862312 20862349 chr2R 20862424 20862461 16 116 37.0 47.5 42.2 0.4 149 chr2R 20862312 intergenic not near genes chr2R 20862386 intergenic not near genes chr2R 20862461 intergenic not near genes chr2R_16_20860001 chr2R_20860001 RAL-303_100b 2240 chr2R 20863092 20863140 chr2R 20863203 20863251 32 108 17.0 12.0 14.5 2.1 159 chr2R 20863092 intergenic not near genes chr2R 20863172 intergenic not near genes chr2R 20863251 intergenic not near genes chr2R_32_20860001 chr2R_20860001 RAL-303_100b 2241 chr2R 20867733 20867787 chr2R 20867835 20867848 9 88 22.5 21.5 22.0 0.4 115 chr2R 20867733 intergenic not near genes chr2R 20867790 intergenic not near genes chr2R 20867848 intergenic not near genes chr2R_9_20865001 chr2R_20865001 RAL-303_100b 2242 chr2R 20912337 20912351 chr2R 20912447 20912461 9 109 21.0 50.5 35.8 0.2 124 chr2R 20912337 intergenic not near genes chr2R 20912399 intergenic not near genes chr2R 20912461 intergenic not near genes chr2R_9_20910001 chr2R_20910001 RAL-303_100b 2243 chr2R 20912352 20912354 chr2R 20912426 20912464 4 101 20.5 33.0 26.8 0.1 112 chr2R 20912352 intergenic not near genes chr2R 20912408 intergenic not near genes chr2R 20912464 intergenic not near genes chr2R_4_20910001 chr2R_20910001 RAL-303_100b 2244 chr2R 20962880 20962939 chr2R 20963003 20963062 75 121 16.5 15.0 15.8 4.5 182 chr2R 20962880 intergenic not near genes chr2R 20962971 intergenic not near genes chr2R 20963062 intergenic not near genes chr2R_75_20960001 chr2R_20960001 RAL-303_100b 2245 chr2R 20967004 20967053 chr2R 20967106 20967150 15 101 35.0 19.0 27.0 0.5 146 chr2R 20967004 intergenic not near genes chr2R 20967077 intergenic not near genes chr2R 20967150 intergenic not near genes chr2R_15_20965001 chr2R_20965001 RAL-303_100b 2246 chr2R 21057461 21057517 chr2R 21057567 21057627 20 104 10.5 0.0 5.2 3.2 166 chr2R 21057461 intergenic shg -,cpa + chr2R 21057544 intergenic cpa +,shg - chr2R 21057627 intergenic cpa +,shg - chr2R_20_21055001 chr2R_21055001 RAL-303_100b 2247 chr2R 21075656 21075710 chr2R 21075768 21075822 27 111 38.5 36.5 37.5 0.7 166 chr2R 21075656 intron Treh + chr2R 21075739 intron Treh + chr2R 21075822 intron Treh + chr2R_27_21075001 chr2R_21075001 RAL-303_100b 2248 chr2R 21080283 21080294 chr2R 21080386 21080397 11 102 11.5 8.5 10.0 1.0 114 chr2R 21080283 intron Treh + chr2R 21080340 intron Treh + chr2R 21080397 intron Treh + chr2R_11_21080001 chr2R_21080001 RAL-303_100b 2249 chr2R 21082918 21082977 chr2R 21083027 21083085 48 106 65.5 54.0 59.8 0.8 167 chr2R 21082918 intron Treh + chr2R 21083002 intron Treh + chr2R 21083085 intron Treh + chr2R_48_21080001 chr2R_21080001 RAL-303_100b 2250 chr2R 21113455 21113693 chr2R 21113569 21113801 26 111 41.5 36.0 38.8 0.7 346 chr2R 21113455 intron ktub + chr2R 21113628 intron ktub + chr2R 21113801 intron ktub + chr2R_26_21110001 chr2R_21110001 RAL-303_100b 2251 chr2R 21136876 21136889 chr2R 21136985 21136998 7 109 31.5 18.5 25.0 0.3 122 chr2R 21136876 intron Magi - chr2R 21136937 intron Magi - chr2R 21136998 intron Magi - chr2R_7_21135001 chr2R_21135001 RAL-303_100b 2252 chr2R 21136890 21136939 chr2R 21136984 21137039 18 106 8.5 18.0 13.2 1.3 149 chr2R 21136890 intron Magi - chr2R 21136964 intron Magi - chr2R 21137039 intron Magi - chr2R_18_21135001 chr2R_21135001 RAL-303_100b 2253 chr2R 21151103 21151146 chr2R 21153750 21153804 opus 37 2657 3.5 14.0 8.8 3.8 2701 chr2R 21151103 intron CG30389 - chr2R 21152454 intron CG30389 - chr2R 21153804 intron CG30389 - chr2R_37_21150001 chr2R_21150001 RAL-303_100b 2254 chr2R 21158871 21158913 chr2R 21159020 21159062 18 148 50.5 50.5 50.5 0.3 191 chr2R 21158871 intron CG30389 - chr2R 21158966 intron CG30389 - chr2R 21159062 intron CG30389 - chr2R_18_21155001 chr2R_21155001 RAL-303_100b 2255 chr2R 21193984 21194033 chr2R 21194094 21194138 32 107 46.0 48.0 47.0 0.7 154 chr2R 21193984 intron Lapsyn + chr2R 21194061 intron Lapsyn + chr2R 21194138 intron Lapsyn + chr2R_32_21190001 chr2R_21190001 RAL-303_100b 2256 chr2R 21226368 21226371 chr2R 21226486 21226489 4 118 40.5 11.0 25.8 0.1 121 chr2R 21226368 intron ASPP - chr2R 21226428 intron ASPP - chr2R 21226489 intron ASPP - chr2R_4_21225001 chr2R_21225001 RAL-303_100b 2257 chr2R 21226376 21226422 chr2R 21226484 21226540 21 115 13.5 10.0 11.8 1.6 164 chr2R 21226376 intron ASPP - chr2R 21226458 intron ASPP - chr2R 21226540 intron ASPP - chr2R_21_21225001 chr2R_21225001 RAL-303_100b 2258 chr2R 21232628 21232635 chr2R 21232821 21232827 6 194 50.5 21.0 35.8 0.2 199 chr2R 21232628 intron ASPP - chr2R 21232728 intron ASPP - chr2R 21232827 intron ASPP - chr2R_6_21230001 chr2R_21230001 RAL-303_100b 2259 chr2R 21251794 21251852 chr2R 21252046 21252104 26 246 36.0 34.0 35.0 0.7 310 chr2R 21251794 intergenic not near genes chr2R 21251949 intergenic not near genes chr2R 21252104 intergenic not near genes chr2R_26_21250001 chr2R_21250001 RAL-303_100b 2260 chr2R 21258454 21258499 chr2R 21258555 21258602 13 101 0.0 13.0 6.5 1.7 148 chr2R 21258454 intron Rgk3 + chr2R 21258528 intron Rgk3 + chr2R 21258602 intron Rgk3 + chr2R_13_21255001 chr2R_21255001 RAL-303_100b 2261 chr2R 21285407 21285436 chr2R 21285509 21285538 24 101 26.0 33.5 29.8 0.8 131 chr2R 21285407 3` UTR,3` UTR MFS16 +,CG10505 - chr2R 21285472 3` UTR,3` UTR MFS16 +,CG10505 - chr2R 21285538 3` UTR,3` UTR MFS16 +,CG10505 - chr2R_24_21285001 chr2R_21285001 RAL-303_100b 2262 chr2R 21322918 21322969 chr2R 21323027 21323032 32 103 54.0 50.0 52.0 0.6 114 chr2R 21322918 5` UTR CG30394 - chr2R 21322975 5` UTR CG30394 - chr2R 21323032 5` UTR CG30394 - chr2R_32_21320001 chr2R_21320001 RAL-303_100b 2263 chr2R 21344422 21344468 chr2R 21344527 21344559 32 106 34.0 36.5 35.2 0.9 137 chr2R 21344422 exon CG15666 + chr2R 21344490 intron CG15666 + chr2R 21344559 intron CG15666 + chr2R_32_21340001 chr2R_21340001 RAL-303_100b 2264 chr2R 21363112 21363185 chr2R 21363235 21363299 13 118 39.0 41.0 40.0 0.3 187 chr2R 21363112 intron cv-2 - chr2R 21363206 intron cv-2 - chr2R 21363299 intron cv-2 - chr2R_13_21360001 chr2R_21360001 RAL-303_100b 2265 chr2R 21417255 21417276 chr2R 21417381 21417385 13 125 26.5 0.5 13.5 0.9 130 chr2R 21417255 intron Sdc - chr2R 21417320 intron Sdc - chr2R 21417385 intron Sdc - chr2R_13_21415001 chr2R_21415001 RAL-303_100b 2266 chr2R 21421313 21421351 chr2R 21421417 21421455 21 103 47.0 55.5 51.2 0.4 142 chr2R 21421313 intron Sdc - chr2R 21421384 intron Sdc - chr2R 21421455 intron Sdc - chr2R_21_21420001 chr2R_21420001 RAL-303_100b 2267 chr2R 21469946 21469962 chr2R 21470048 21470059 8 106 27.0 33.0 30.0 0.3 113 chr2R 21469946 intron Sdc - chr2R 21470002 intron Sdc - chr2R 21470059 intron Sdc - chr2R_8_21470001 chr2R_21470001 RAL-303_100b 2268 chr2R 21472295 21472331 chr2R 21472388 21472434 21 101 39.0 34.5 36.8 0.6 139 chr2R 21472295 intron Sdc - chr2R 21472364 intron Sdc - chr2R 21472434 intron Sdc - chr2R_21_21470001 chr2R_21470001 RAL-303_100b 2269 chr2R 21540669 21540703 chr2R 21540905 21540939 30 238 12.0 7.0 9.5 2.9 270 chr2R 21540669 intron Egfr + chr2R 21540804 intron Egfr + chr2R 21540939 intron Egfr + chr2R_30_21540001 chr2R_21540001 RAL-303_100b 2270 chr2R 21546763 21546798 chr2R 21546869 21546875 7 96 49.0 38.5 43.8 0.2 112 chr2R 21546763 intron Egfr + chr2R 21546819 intron Egfr + chr2R 21546875 intron Egfr + chr2R_7_21545001 chr2R_21545001 RAL-303_100b 2271 chr2R 21546800 21546819 chr2R 21546867 21546879 6 64 45.0 39.0 42.0 0.1 79 chr2R 21546800 intron Egfr + chr2R 21546840 intron Egfr + chr2R 21546879 intron Egfr + chr2R_6_21545001 chr2R_21545001 RAL-303_100b 2272 chr2R 21592819 21592856 chr2R 21592927 21592958 16 102 20.5 24.0 22.2 0.7 139 chr2R 21592819 intergenic not near genes chr2R 21592888 intergenic not near genes chr2R 21592958 intergenic not near genes chr2R_16_21590001 chr2R_21590001 RAL-303_100b 2273 chr2R 21697511 21697540 chr2R 21697629 21697655 10 118 1.0 19.0 10.0 0.9 144 chr2R 21697511 intergenic CngB -,HmgZ - chr2R 21697583 intergenic HmgZ -,CngB - chr2R 21697655 intergenic HmgZ - chr2R_10_21695001 chr2R_21695001 RAL-303_100b 2274 chr2R 21710913 21710965 chr2R 21711035 21711087 61 121 17.0 15.5 16.2 3.5 174 chr2R 21710913 intron,intron HmgD +,CG30403 - chr2R 21711000 intron,intron HmgD +,CG30403 - chr2R 21711087 intron,intron HmgD +,CG30403 - chr2R_61_21710001 chr2R_21710001 RAL-303_100b 2275 chr2R 21721551 21721611 chr2R 21721664 21721723 28 111 6.0 0.5 3.2 6.7 172 chr2R 21721551 intron LBR + chr2R 21721637 intron LBR + chr2R 21721723 intron LBR + chr2R_28_21720001 chr2R_21720001 RAL-303_100b 2276 chr2R 21725205 21725219 chr2R 21725307 21725321 7 102 0.0 18.0 9.0 0.7 116 chr2R 21725205 intergenic not near genes chr2R 21725263 intergenic not near genes chr2R 21725321 intergenic not near genes chr2R_7_21725001 chr2R_21725001 RAL-303_100b 2277 chr2R 21738257 21738259 chr2R 21747442 21747444 roo 5 9185 33.5 14.0 23.8 0.2 9187 chr2R 21738257 intergenic not near genes chr2R 21742850 intergenic not near genes chr2R 21747444 intergenic not near genes chr2R_5_21740001 chr2R_21740001 RAL-303_100b 2278 chr2R 21738262 21738285 chr2R 21747440 21747467 roo 17 9180 21.0 13.5 17.2 0.9 9205 chr2R 21738262 intergenic not near genes chr2R 21742864 intergenic not near genes chr2R 21747467 intergenic not near genes chr2R_17_21740001 chr2R_21740001 RAL-303_100b 2279 chr2R 21738286 21738311 chr2R 21747436 21747436 roo 10 9161 9.0 12.5 10.8 0.8 9150 chr2R 21738286 intergenic not near genes chr2R 21742861 intergenic not near genes chr2R 21747436 intergenic not near genes chr2R_10_21740001 chr2R_21740001 RAL-303_100b 2280 chr2R 21753059 21753117 chr2R 21753569 21753627 roo 52 508 17.5 19.0 18.2 2.7 568 chr2R 21753059 intergenic not near genes chr2R 21753343 intergenic not near genes chr2R 21753627 intergenic not near genes chr2R_52_21750001 chr2R_21750001 RAL-303_100b 2281 chr2R 21759534 21759591 chr2R 21759646 21759703 53 106 8.5 9.0 8.8 5.4 169 chr2R 21759534 intergenic not near genes chr2R 21759618 intergenic not near genes chr2R 21759703 intergenic not near genes chr2R_53_21755001 chr2R_21755001 RAL-303_100b 2282 chr2R 21769529 21769530 chr2R 21769802 21769808 5 278 58.0 53.5 55.8 0.1 279 chr2R 21769529 intron CG30395 + chr2R 21769668 exon CG30395 + chr2R 21769808 exon CG30395 + chr2R_5_21765001 chr2R_21765001 RAL-303_100b 2283 chr2R 21769531 21769574 chr2R 21769653 21769696 7 122 58.0 57.5 57.8 0.1 165 chr2R 21769531 intron CG30395 + chr2R 21769614 exon CG30395 + chr2R 21769696 exon CG30395 + chr2R_7_21765001 chr2R_21765001 RAL-303_100b 2284 chr2R 21777403 21777444 chr2R 21777511 21777552 31 108 14.5 12.5 13.5 2.1 149 chr2R 21777403 intergenic not near genes chr2R 21777478 intergenic not near genes chr2R 21777552 intergenic not near genes chr2R_31_21775001 chr2R_21775001 RAL-303_100b 2285 chr2R 21797295 21797339 chr2R 21797395 21797444 22 102 13.0 12.0 12.5 1.6 149 chr2R 21797295 intergenic CG34204 + chr2R 21797370 intergenic CG34204 + chr2R 21797444 intergenic not near genes chr2R_22_21795001 chr2R_21795001 RAL-303_100b 2286 chr2R 21802403 21802450 chr2R 21802519 21802566 6 109 12.5 4.5 8.5 0.6 163 chr2R 21802403 intergenic not near genes chr2R 21802484 intergenic not near genes chr2R 21802566 intergenic not near genes chr2R_6_21800001 chr2R_21800001 RAL-303_100b 2287 chr2R 21809501 21809518 chr2R 21817766 21817782 roo 21 8264 38.5 16.0 27.2 0.7 8281 chr2R 21809501 intergenic not near genes chr2R 21813642 intergenic not near genes chr2R 21817782 intergenic not near genes chr2R_21_21810001 chr2R_21810001 RAL-303_100b 2288 chr2R 21809519 21809552 chr2R 21817762 21817817 roo 41 8264 19.5 13.0 16.2 2.4 8298 chr2R 21809519 intergenic not near genes chr2R 21813668 intergenic not near genes chr2R 21817817 intergenic not near genes chr2R_41_21810001 chr2R_21810001 RAL-303_100b 2289 chr2R 21857321 21857372 chr2R 21857436 21857471 48 113 16.5 17.0 16.8 2.7 150 chr2R 21857321 intergenic not near genes chr2R 21857396 intergenic not near genes chr2R 21857471 intergenic not near genes chr2R_48_21855001 chr2R_21855001 RAL-303_100b 2290 chr2R 21868987 21868994 chr2R 21869102 21869109 6 115 16.0 0.0 8.0 0.7 122 chr2R 21868987 intergenic not near genes chr2R 21869048 intergenic not near genes chr2R 21869109 intergenic not near genes chr2R_6_21865001 chr2R_21865001 RAL-303_100b 2291 chr2R 21888292 21888296 chr2R 21888408 21888412 5 116 26.0 22.0 24.0 0.2 120 chr2R 21888292 intron Fili + chr2R 21888352 intron Fili + chr2R 21888412 intron Fili + chr2R_5_21885001 chr2R_21885001 RAL-303_100b 2292 chr2R 21888297 21888321 chr2R 21888406 21888437 31 114 15.5 21.0 18.2 1.6 140 chr2R 21888297 intron Fili + chr2R 21888367 intron Fili + chr2R 21888437 intron Fili + chr2R_31_21885001 chr2R_21885001 RAL-303_100b 2293 chr2R 21906245 21906301 chr2R 21906371 21906417 39 122 10.5 12.5 11.5 3.1 172 chr2R 21906245 intron Fili + chr2R 21906331 intron Fili + chr2R 21906417 intron Fili + chr2R_39_21905001 chr2R_21905001 RAL-303_100b 2294 chr2R 21919852 21919905 chr2R 21919959 21920013 53 108 11.5 11.5 11.5 4.2 161 chr2R 21919852 intron Fili + chr2R 21919932 intron Fili + chr2R 21920013 intron Fili + chr2R_53_21915001 chr2R_21915001 RAL-303_100b 2295 chr2R 21920913 21920921 chr2R 21921016 21921024 6 103 16.0 12.0 14.0 0.4 111 chr2R 21920913 intron Fili + chr2R 21920968 intron Fili + chr2R 21921024 intron Fili + chr2R_6_21920001 chr2R_21920001 RAL-303_100b 2296 chr2R 21946742 21946803 chr2R 21946863 21946924 56 120 7.5 11.5 9.5 5.3 182 chr2R 21946742 intergenic Fili + chr2R 21946833 intergenic not near genes chr2R 21946924 intergenic not near genes chr2R_56_21945001 chr2R_21945001 RAL-303_100b 2297 chr2R 22012970 22013011 chr2R 22013090 22013128 31 119 8.5 13.5 11.0 2.6 158 chr2R 22012970 intron CG34370 - chr2R 22013049 intron CG34370 - chr2R 22013128 intron CG34370 - chr2R_31_22010001 chr2R_22010001 RAL-303_100b 2298 chr2R 22029456 22029505 chr2R 22029619 22029668 44 162 11.0 10.0 10.5 3.8 212 chr2R 22029456 intron CG34370 - chr2R 22029562 intron CG34370 - chr2R 22029668 intron CG34370 - chr2R_44_22025001 chr2R_22025001 RAL-303_100b 2299 chr2R 22099880 22099933 chr2R 22099984 22099996 24 100 11.5 10.0 10.8 2.0 116 chr2R 22099880 intergenic CG11073 - chr2R 22099938 intergenic CG11073 - chr2R 22099996 intergenic CG11073 - chr2R_24_22095001 chr2R_22095001 RAL-303_100b 2300 chr2R 22132267 22132285 chr2R 22132372 22132390 18 105 24.0 14.0 19.0 0.9 123 chr2R 22132267 intergenic not near genes chr2R 22132328 intergenic not near genes chr2R 22132390 intergenic not near genes chr2R_18_22130001 chr2R_22130001 RAL-303_100b 2301 chr2R 22151856 22151917 chr2R 22151957 22152018 55 98 15.5 14.5 15.0 3.4 162 chr2R 22151856 intron a + chr2R 22151937 intron a + chr2R 22152018 intron a + chr2R_55_22150001 chr2R_22150001 RAL-303_100b 2302 chr2R 22178734 22178774 chr2R 22178846 22178885 15 112 0.0 21.0 10.5 1.3 151 chr2R 22178734 intron CG11170 - chr2R 22178810 intron CG11170 - chr2R 22178885 intron CG11170 - chr2R_15_22175001 chr2R_22175001 RAL-303_100b 2303 chr2R 22179208 22179213 chr2R 22179315 22179321 4 108 0.5 11.5 6.0 0.6 113 chr2R 22179208 intron CG11170 - chr2R 22179264 intron CG11170 - chr2R 22179321 intron CG11170 - chr2R_4_22175001 chr2R_22175001 RAL-303_100b 2304 chr2R 22179214 22179218 chr2R 22179307 22179324 6 105 0.5 9.0 4.8 1.0 110 chr2R 22179214 intron CG11170 - chr2R 22179269 intron CG11170 - chr2R 22179324 intron CG11170 - chr2R_6_22175001 chr2R_22175001 RAL-303_100b 2305 chr2R 22179219 22179230 chr2R 22179305 22179308 4 91 0.5 9.0 4.8 0.7 89 chr2R 22179219 intron CG11170 - chr2R 22179264 intron CG11170 - chr2R 22179308 intron CG11170 - chr2R_4_22175001 chr2R_22175001 RAL-303_100b 2306 chr2R 22182886 22182937 chr2R 22182995 22183046 35 108 6.5 11.5 9.0 3.5 160 chr2R 22182886 intergenic CG11170 -,CG11275 +,MED16 + chr2R 22182966 intergenic CG11170 -,MED16 +,CG11275 + chr2R 22183046 intergenic MED16 +,CG11170 -,CG11275 + chr2R_35_22180001 chr2R_22180001 RAL-303_100b 2307 chr2R 22248816 22248872 chr2R 22248918 22248974 62 99 18.5 16.0 17.2 3.4 158 chr2R 22248816 intron dve + chr2R 22248895 intron dve + chr2R 22248974 intron dve + chr2R_62_22245001 chr2R_22245001 RAL-303_100b 2308 chr2R 22290055 22290093 chr2R 22290164 22290182 27 107 21.5 11.5 16.5 1.5 127 chr2R 22290055 intergenic not near genes chr2R 22290118 intergenic not near genes chr2R 22290182 intergenic not near genes chr2R_27_22290001 chr2R_22290001 RAL-303_100b 2309 chr2R 4825123 4825123 chr2R 22311215 22311218 7 17486093 72.0 33.5 52.8 0.1 17486095 chr2R 4825123 intergenic not near genes chr2R 13568170 intergenic not near genes chr2R 22311218 intron wdp - chr2R_7_13565001 chr2R_13565001 RAL-303_100b 2310 chr2R 22349670 22349686 chr2R 22351479 22351495 jockey 11 1809 40.5 21.0 30.8 0.3 1825 chr2R 22349670 intron Liprin-gamma - chr2R 22350582 intron Liprin-gamma - chr2R 22351495 intron Liprin-gamma - chr2R_11_22350001 chr2R_22350001 RAL-303_100b 2311 chr2R 22349687 22349719 chr2R 22351476 22351528 jockey 32 1807 17.5 20.5 19.0 1.6 1841 chr2R 22349687 intron Liprin-gamma - chr2R 22350608 intron Liprin-gamma - chr2R 22351528 intron Liprin-gamma - chr2R_32_22350001 chr2R_22350001 RAL-303_100b 2312 chr2R 22360357 22360402 chr2R 22360815 22360823 jockey 15 452 22.0 12.5 17.2 0.8 466 chr2R 22360357 intron Liprin-gamma - chr2R 22360590 intron Liprin-gamma - chr2R 22360823 intron Liprin-gamma - chr2R_15_22360001 chr2R_22360001 RAL-303_100b 2313 chr2R 22362637 22362687 chr2R 22362741 22362791 47 101 9.0 17.0 13.0 3.4 154 chr2R 22362637 intron Liprin-gamma - chr2R 22362714 intron Liprin-gamma - chr2R 22362791 intron Liprin-gamma - chr2R_47_22360001 chr2R_22360001 RAL-303_100b 2314 chr2R 22370760 22370774 chr2R 22370867 22370881 13 107 9.5 6.0 7.8 1.5 121 chr2R 22370760 intron Liprin-gamma - chr2R 22370820 intron Liprin-gamma - chr2R 22370881 intron Liprin-gamma - chr2R_13_22370001 chr2R_22370001 RAL-303_100b 2315 chr2R 22380337 22380394 chr2R 22380453 22380510 32 114 9.0 2.0 5.5 4.9 173 chr2R 22380337 intron wrapper + chr2R 22380424 intron wrapper + chr2R 22380510 intron wrapper + chr2R_32_22380001 chr2R_22380001 RAL-303_100b 2316 chr2R 22420656 22420681 chr2R 22420756 22420791 20 109 2.0 17.5 9.8 1.9 135 chr2R 22420656 intergenic mRpS29 -,rad50 + chr2R 22420724 intergenic rad50 +,mRpS29 - chr2R 22420791 intergenic rad50 +,mRpS29 - chr2R_20_22420001 chr2R_22420001 RAL-303_100b 2317 chr2R 22460354 22460406 chr2R 22460458 22460510 65 102 12.5 11.5 12.0 5.0 156 chr2R 22460354 intron CG10384 + chr2R 22460432 intron CG10384 + chr2R 22460510 intron CG10384 + chr2R_65_22460001 chr2R_22460001 RAL-303_100b 2318 chr2R 22465294 22465300 chr2R 22465512 22465518 BS 11 218 39.5 16.0 27.8 0.4 224 chr2R 22465294 intron CG10384 + chr2R 22465406 intron CG10384 + chr2R 22465518 intron CG10384 + chr2R_11_22465001 chr2R_22465001 RAL-303_100b 2319 chr2R 22465302 22465347 chr2R 22465510 22465570 BS 21 216 12.0 15.5 13.8 1.4 268 chr2R 22465302 intron CG10384 + chr2R 22465436 intron CG10384 + chr2R 22465570 intron CG10384 + chr2R_21_22465001 chr2R_22465001 RAL-303_100b 2320 chr2R 22499863 22499887 chr2R 22499928 22499947 18 95 1.5 14.5 8.0 2.0 84 chr2R 22499863 intron px - chr2R 22499905 intron px - chr2R 22499947 intron px - chr2R_18_22495001 chr2R_22495001 RAL-303_100b 2321 chr2R 22525726 22525744 chr2R 22529306 22529324 jockey 14 3579 34.5 18.0 26.2 0.5 3598 chr2R 22525726 intron px - chr2R 22527525 intron px - chr2R 22529324 intron px - chr2R_14_22525001 chr2R_22525001 RAL-303_100b 2322 chr2R 22525745 22525785 chr2R 22529303 22529344 jockey 45 3576 11.5 16.5 14.0 3.0 3599 chr2R 22525745 intron px - chr2R 22527544 intron px - chr2R 22529344 intron px - chr2R_45_22525001 chr2R_22525001 RAL-303_100b 2323 chr2R 22575634 22575695 chr2R 22575738 22575799 57 100 12.0 13.0 12.5 4.2 165 chr2R 22575634 intron dnr1 - chr2R 22575716 intron dnr1 - chr2R 22575799 intron dnr1 - chr2R_57_22575001 chr2R_22575001 RAL-303_100b 2324 chr2R 22580412 22580442 chr2R 22586581 22586611 diver 16 6167 18.5 15.0 16.8 0.9 6199 chr2R 22580412 intron dnr1 - chr2R 22583512 intron dnr1 - chr2R 22586611 intron dnr1 - chr2R_16_22580001 chr2R_22580001 RAL-303_100b 2325 chr2R 22588124 22588155 chr2R 22588244 22588275 31 116 28.0 27.0 27.5 1.1 151 chr2R 22588124 intron dnr1 - chr2R 22588200 intron dnr1 - chr2R 22588275 intron dnr1 - chr2R_31_22585001 chr2R_22585001 RAL-303_100b 2326 chr2R 22620803 22620859 chr2R 22620928 22620983 54 122 8.0 16.0 12.0 4.2 180 chr2R 22620803 5` UTR CG33143 + chr2R 22620893 5` UTR CG33143 + chr2R 22620983 5` UTR CG33143 + chr2R_54_22620001 chr2R_22620001 RAL-303_100b 2327 chr2R 22623429 22623481 chr2R 22623591 22623646 40 163 13.5 17.0 15.2 2.5 217 chr2R 22623429 intron CG33143 + chr2R 22623538 intron CG33143 + chr2R 22623646 intron CG33143 + chr2R_40_22620001 chr2R_22620001 RAL-303_100b 2328 chr2R 22679724 22679736 chr2R 22679826 22679838 9 101 43.0 13.5 28.2 0.3 114 chr2R 22679724 intergenic not near genes chr2R 22679781 intergenic not near genes chr2R 22679838 intergenic not near genes chr2R_9_22675001 chr2R_22675001 RAL-303_100b 2329 chr2R 22679737 22679781 chr2R 22679824 22679857 41 88 17.0 13.5 15.2 2.5 120 chr2R 22679737 intergenic not near genes chr2R 22679797 intergenic not near genes chr2R 22679857 intergenic not near genes chr2R_41_22675001 chr2R_22675001 RAL-303_100b 2330 chr2R 22756529 22756650 chr2R 22756629 22756753 57 101 32.5 34.0 33.2 1.7 224 chr2R 22756529 intron,intron CG42260 -,CR30267 + chr2R 22756641 intron,intron CG42260 -,CR30267 + chr2R 22756753 intron,intron CG42260 -,CR30267 + chr2R_57_22755001 chr2R_22755001 RAL-303_100b 2331 chr2R 22774941 22774996 chr2R 22775385 22775440 jockey 29 442 33.0 17.0 25.0 1.1 499 chr2R 22774941 intron CG42260 - chr2R 22775190 intron CG42260 - chr2R 22775440 intron CG42260 - chr2R_29_22775001 chr2R_22775001 RAL-303_100b 2332 chr2R 22786165 22786218 chr2R 22794812 22794865 23 8643 38.5 43.5 41.0 0.5 8700 chr2R 22786165 intron CG42260 - chr2R 22790515 intron CG42260 - chr2R 22794865 intron CG42260 - chr2R_23_22790001 chr2R_22790001 RAL-303_100b 2333 chr2R 22789795 22789840 chr2R 22790106 22790106 25 308 13.0 11.5 12.2 1.9 311 chr2R 22789795 intron CG42260 - chr2R 22789950 intron CG42260 - chr2R 22790106 intron CG42260 - chr2R_25_22785001 chr2R_22785001 RAL-303_100b 2334 chr2R 22834742 22834930 chr2R 22837444 22837593 4 2670 16.0 65.5 40.8 0.1 2851 chr2R 22834742 intron CG12490 + chr2R 22836168 exon CG12490 + chr2R 22837593 intron CG9825 + chr2R_4_22835001 chr2R_22835001 RAL-303_100b 2335 chr2R 22843006 22843028 chr2R 22844993 22845015 flea 10 1986 34.0 14.0 24.0 0.4 2009 chr2R 22843006 intergenic CG9826 + chr2R 22844010 intergenic not near genes chr2R 22845015 intergenic not near genes chr2R_10_22840001 chr2R_22840001 RAL-303_100b 2336 chr2R 22843029 22843050 chr2R 22844985 22845003 flea 20 1984 24.5 11.0 17.8 1.1 1974 chr2R 22843029 intergenic CG9826 + chr2R 22844016 intergenic not near genes chr2R 22845003 intergenic not near genes chr2R_20_22840001 chr2R_22840001 RAL-303_100b 2337 chr2R 22846892 22846945 chr2R 22846994 22847037 26 99 36.0 34.5 35.2 0.7 145 chr2R 22846892 intron CG3649 + chr2R 22846964 exon CG3649 + chr2R 22847037 exon CG3649 + chr2R_26_22845001 chr2R_22845001 RAL-303_100b 2338 chr2R 22907380 22907425 chr2R 22907498 22907509 14 110 51.5 57.5 54.5 0.3 129 chr2R 22907380 intron nahoda + chr2R 22907444 intron nahoda + chr2R 22907509 intron nahoda + chr2R_14_22905001 chr2R_22905001 RAL-303_100b 2339 chr2R 22907428 22907436 chr2R 22907497 22907539 6 92 46.5 57.0 51.8 0.1 111 chr2R 22907428 intron nahoda + chr2R 22907484 intron nahoda + chr2R 22907539 intron nahoda + chr2R_6_22905001 chr2R_22905001 RAL-303_100b 2340 chr2R 22941806 22941832 chr2R 22941910 22941936 10 104 30.5 48.5 39.5 0.2 130 chr2R 22941806 intergenic CG42694 + chr2R 22941871 intergenic CG42694 + chr2R 22941936 5` UTR CG42694 + chr2R_10_22940001 chr2R_22940001 RAL-303_100b 2341 chr2R 22941833 22941844 chr2R 22941897 22941948 6 97 32.0 45.0 38.5 0.2 115 chr2R 22941833 intergenic CG42694 + chr2R 22941890 5` UTR CG42694 + chr2R 22941948 5` UTR CG42694 + chr2R_6_22940001 chr2R_22940001 RAL-303_100b 2342 chr2R 22945034 22945084 chr2R 22945168 22945188 61 134 18.5 6.5 12.5 4.5 154 chr2R 22945034 exon CG42694 + chr2R 22945111 3` UTR CG42694 + chr2R 22945188 intergenic CG42694 + chr2R_61_22945001 chr2R_22945001 RAL-303_100b 2343 chr2R 22953367 22953379 chr2R 22953486 22953488 5 116 13.5 4.0 8.8 0.5 121 chr2R 22953367 intron CR32835 - chr2R 22953428 3` UTR CR32835 - chr2R 22953488 3` UTR CR32835 - chr2R_5_22950001 chr2R_22950001 RAL-303_100b 2344 chr2R 22957725 22957762 chr2R 22957832 22957869 31 105 41.5 32.5 37.0 0.8 144 chr2R 22957725 intergenic CR44780 - chr2R 22957797 intergenic CR44780 - chr2R 22957869 intergenic CR44780 - chr2R_31_22955001 chr2R_22955001 RAL-303_100b 2345 chr2R 22988286 22988322 chr2R 22988392 22988428 20 103 42.5 38.5 40.5 0.5 142 chr2R 22988286 intron twi + chr2R 22988357 intron twi + chr2R 22988428 intron twi + chr2R_20_22985001 chr2R_22985001 RAL-303_100b 2346 chr2R 23000112 23000167 chr2R 23000217 23000264 30 99 59.0 55.5 57.2 0.5 152 chr2R 23000112 intron twi + chr2R 23000188 intron twi + chr2R 23000264 intron twi + chr2R_30_23000001 chr2R_23000001 RAL-303_100b 2347 chr2R 23037255 23037299 chr2R 23037356 23037387 20 94 44.0 36.0 40.0 0.5 132 chr2R 23037255 intron,intron twi +,CG42741 - chr2R 23037321 intron,intron twi +,CG42741 - chr2R 23037387 intron,intron twi +,CG42741 - chr2R_20_23035001 chr2R_23035001 RAL-303_100b 2348 chr2R 23037300 23037303 chr2R 23037351 23037404 4 80 44.0 35.5 39.8 0.1 104 chr2R 23037300 intron,intron twi +,CG42741 - chr2R 23037352 intron,intron twi +,CG42741 - chr2R 23037404 intron,intron twi +,CG42741 - chr2R_4_23035001 chr2R_23035001 RAL-303_100b 2349 chr2R 23052624 23052686 chr2R 23052725 23052787 56 100 18.5 17.5 18.0 2.9 163 chr2R 23052624 intergenic not near genes chr2R 23052706 intergenic not near genes chr2R 23052787 intergenic not near genes chr2R_56_23050001 chr2R_23050001 RAL-303_100b 2350 chr2R 23061750 23061773 chr2R 23061869 23061892 11 117 43.5 50.5 47.0 0.2 142 chr2R 23061750 3` UTR l(2)06496 - chr2R 23061821 3` UTR l(2)06496 - chr2R 23061892 3` UTR l(2)06496 - chr2R_11_23060001 chr2R_23060001 RAL-303_100b 2351 chr2R 23061775 23061791 chr2R 23061868 23061910 11 116 45.0 50.0 47.5 0.2 135 chr2R 23061775 3` UTR l(2)06496 - chr2R 23061842 3` UTR l(2)06496 - chr2R 23061910 3` UTR l(2)06496 - chr2R_11_23060001 chr2R_23060001 RAL-303_100b 2352 chr2R 23070391 23070395 chr2R 23070509 23070516 6 120 64.5 46.5 55.5 0.1 125 chr2R 23070391 intron l(2)k09913 + chr2R 23070454 intron l(2)k09913 + chr2R 23070516 intron l(2)k09913 + chr2R_6_23070001 chr2R_23070001 RAL-303_100b 2353 chr2R 23070400 23070439 chr2R 23070508 23070550 28 118 45.0 47.0 46.0 0.6 150 chr2R 23070400 intron l(2)k09913 + chr2R 23070475 intron l(2)k09913 + chr2R 23070550 intron l(2)k09913 + chr2R_28_23070001 chr2R_23070001 RAL-303_100b 2354 chr2R 23077583 23077638 chr2R 23079941 23079989 33 2353 108.5 103.5 106.0 0.3 2406 chr2R 23077583 exon Art7 - chr2R 23078786 exon Art7 - chr2R 23079989 intergenic CG43659 - chr2R_33_23075001 chr2R_23075001 RAL-303_100b 2355 chr2R 23119585 23119624 chr2R 23119677 23119726 11 99 33.5 36.5 35.0 0.3 141 chr2R 23119585 intergenic not near genes chr2R 23119656 intergenic not near genes chr2R 23119726 intergenic not near genes chr2R_11_23115001 chr2R_23115001 RAL-303_100b 2356 chr2R 23134814 23134850 chr2R 23134924 23134934 8 103 36.0 44.5 40.2 0.2 120 chr2R 23134814 intergenic not near genes chr2R 23134874 intergenic not near genes chr2R 23134934 intergenic not near genes chr2R_8_23130001 chr2R_23130001 RAL-303_100b 2357 chr2R 23175014 23175066 chr2R 23175115 23175168 33 99 32.0 33.5 32.8 1.0 154 chr2R 23175014 intron CG34371 - chr2R 23175091 intron CG34371 - chr2R 23175168 intron CG34371 - chr2R_33_23175001 chr2R_23175001 RAL-303_100b 2358 chr2R 23186546 23186597 chr2R 23186649 23186700 32 102 40.0 37.5 38.8 0.8 154 chr2R 23186546 intron CG34371 - chr2R 23186623 intron CG34371 - chr2R 23186700 intron CG34371 - chr2R_32_23185001 chr2R_23185001 RAL-303_100b 2359 chr2R 23188532 23188590 chr2R 23188635 23188657 47 100 13.0 14.5 13.8 3.2 125 chr2R 23188532 intron CG34371 - chr2R 23188594 intron CG34371 - chr2R 23188657 intron CG34371 - chr2R_47_23185001 chr2R_23185001 RAL-303_100b 2360 chr2R 23189997 23190053 chr2R 23190102 23190123 8 101 48.5 43.0 45.8 0.2 126 chr2R 23189997 intron CG34371 - chr2R 23190060 intron CG34371 - chr2R 23190123 intron CG34371 - chr2R_8_23190001 chr2R_23190001 RAL-303_100b 2361 chr2R 23231933 23231997 chr2R 23232079 23232101 20 142 26.0 39.5 32.8 0.6 168 chr2R 23231933 intergenic not near genes chr2R 23232017 intergenic not near genes chr2R 23232101 intergenic not near genes chr2R_20_23230001 chr2R_23230001 RAL-303_100b 2362 chr2R 23236791 23236853 chr2R 23236914 23236972 20 117 3.5 1.0 2.2 6.2 181 chr2R 23236791 intergenic not near genes chr2R 23236882 intergenic not near genes chr2R 23236972 intergenic not near genes chr2R_20_23235001 chr2R_23235001 RAL-303_100b 2363 chr2R 23291304 23291339 chr2R 23291407 23291442 23 100 39.0 31.0 35.0 0.6 138 chr2R 23291304 3` UTR CR44783 - chr2R 23291373 3` UTR CR44783 - chr2R 23291442 intergenic CR44783 - chr2R_23_23290001 chr2R_23290001 RAL-303_100b 2364 chr2R 23315369 23315386 chr2R 23315566 23315583 6 197 27.0 50.5 38.8 0.2 214 chr2R 23315369 intergenic not near genes chr2R 23315476 intergenic not near genes chr2R 23315583 intergenic not near genes chr2R_6_23315001 chr2R_23315001 RAL-303_100b 2365 chr2R 23315391 23315396 chr2R 23315563 23315593 4 189 25.5 35.0 30.2 0.1 202 chr2R 23315391 intergenic not near genes chr2R 23315492 intergenic not near genes chr2R 23315593 intergenic not near genes chr2R_4_23315001 chr2R_23315001 RAL-303_100b 2366 chr2R 23402584 23402641 chr2R 23407685 23407725 flea 57 5099 12.0 17.0 14.5 3.7 5141 chr2R 23402584 intergenic CG3520 - chr2R 23405154 intergenic not near genes chr2R 23407725 intergenic not near genes chr2R_57_23405001 chr2R_23405001 RAL-303_100b 2367 chr2R 23407938 23407998 chr2R 23408218 23408259 21 274 54.0 52.0 53.0 0.4 321 chr2R 23407938 intergenic not near genes chr2R 23408098 intergenic not near genes chr2R 23408259 intergenic not near genes chr2R_21_23405001 chr2R_23405001 RAL-303_100b 2368 chr2R 23421333 23421380 chr2R 23421448 23421494 18 112 42.5 33.5 38.0 0.5 161 chr2R 23421333 intergenic CG9815 - chr2R 23421414 intergenic CG9815 - chr2R 23421494 intergenic CG9815 - chr2R_18_23420001 chr2R_23420001 RAL-303_100b 2369 chr2R 23423718 23423774 chr2R 23423898 23423957 28 181 38.5 57.5 48.0 0.6 239 chr2R 23423718 intron CG9815 - chr2R 23423838 intron CG9815 - chr2R 23423957 intron CG9815 - chr2R_28_23420001 chr2R_23420001 RAL-303_100b 2370 chr2R 23429055 23429100 chr2R 23429233 23429283 27 181 37.0 45.0 41.0 0.6 228 chr2R 23429055 intron CG9815 - chr2R 23429169 intron CG9815 - chr2R 23429283 intron CG9815 - chr2R_27_23425001 chr2R_23425001 RAL-303_100b 2371 chr2R 23437206 23437246 chr2R 23437308 23437328 32 96 15.0 14.0 14.5 2.1 122 chr2R 23437206 intergenic not near genes chr2R 23437267 intergenic not near genes chr2R 23437328 intergenic not near genes chr2R_32_23435001 chr2R_23435001 RAL-303_100b 2372 chr2R 23488967 23489017 chr2R 23489146 23489203 20 183 29.5 26.0 27.8 0.7 236 chr2R 23488967 intron CG43795 + chr2R 23489085 intron CG43795 + chr2R 23489203 intron CG43795 + chr2R_20_23485001 chr2R_23485001 RAL-303_100b 2373 chr2R 23493002 23493040 chr2R 23493091 23493138 22 99 29.5 38.5 34.0 0.6 136 chr2R 23493002 intergenic not near genes chr2R 23493070 intergenic not near genes chr2R 23493138 intergenic not near genes chr2R_22_23490001 chr2R_23490001 RAL-303_100b 2374 chr2R 23508893 23508945 chr2R 23509035 23509087 47 140 10.0 18.0 14.0 3.1 194 chr2R 23508893 intergenic not near genes chr2R 23508990 intergenic not near genes chr2R 23509087 intergenic not near genes chr2R_47_23505001 chr2R_23505001 RAL-303_100b 2375 chr2R 23518169 23518211 chr2R 23518272 23518293 31 102 14.5 11.0 12.8 2.2 124 chr2R 23518169 intergenic not near genes chr2R 23518231 intergenic not near genes chr2R 23518293 intergenic not near genes chr2R_31_23515001 chr2R_23515001 RAL-303_100b 2376 chr2R 23529551 23529605 chr2R 23537152 23537206 412 34 7593 16.5 19.5 18.0 1.8 7655 chr2R 23529551 intron bw - chr2R 23533378 intron bw - chr2R 23537206 exon bw - chr2R_34_23530001 chr2R_23530001 RAL-303_100b 2377 chr2R 23588071 23588075 chr2R 23588173 23588178 6 102 15.5 13.0 14.2 0.4 107 chr2R 23588071 intron apt + chr2R 23588124 intron apt + chr2R 23588178 intron apt + chr2R_6_23585001 chr2R_23585001 RAL-303_100b 2378 chr2R 23589153 23589194 chr2R 23589255 23589296 55 100 26.0 21.5 23.8 2.2 143 chr2R 23589153 intron apt + chr2R 23589224 intron apt + chr2R 23589296 intron apt + chr2R_55_23585001 chr2R_23585001 RAL-303_100b 2379 chr2R 23607010 23607191 chr2R 23607116 23607309 52 109 52.5 57.0 54.8 0.9 299 chr2R 23607010 intron CG17664 - chr2R 23607160 intron CG17664 - chr2R 23607309 intron CG17664 - chr2R_52_23605001 chr2R_23605001 RAL-303_100b 2380 chr2R 23663351 23663400 chr2R 23663447 23663501 37 97 37.0 31.0 34.0 1.1 150 chr2R 23663351 intron Pde8 + chr2R 23663426 intron Pde8 + chr2R 23663501 intron Pde8 + chr2R_37_23660001 chr2R_23660001 RAL-303_100b 2381 chr2R 23674161 23674191 chr2R 23674261 23674296 23 101 29.5 17.5 23.5 0.9 135 chr2R 23674161 intron Pde8 + chr2R 23674228 intron Pde8 + chr2R 23674296 exon Pde8 + chr2R_23_23670001 chr2R_23670001 RAL-303_100b 2382 chr2R 23679448 23679476 chr2R 23679550 23679578 20 101 59.0 45.0 52.0 0.4 130 chr2R 23679448 3` UTR Pde8 + chr2R 23679513 3` UTR Pde8 + chr2R 23679578 3` UTR Pde8 + chr2R_20_23675001 chr2R_23675001 RAL-303_100b 2383 chr2R 23719769 23719785 chr2R 23719891 23719907 10 121 34.5 16.0 25.2 0.4 138 chr2R 23719769 intron,exon Sesn +,CG18128 - chr2R 23719838 intron,exon Sesn +,CG18128 - chr2R 23719907 intron,5` UTR Sesn +,CG18128 - chr2R_10_23715001 chr2R_23715001 RAL-303_100b 2384 chr2R 23719786 23719823 chr2R 23719888 23719945 64 115 15.5 15.5 15.5 3.9 159 chr2R 23719786 intron,exon Sesn +,CG18128 - chr2R 23719866 intron,5` UTR Sesn +,CG18128 - chr2R 23719945 intron Sesn + chr2R_64_23715001 chr2R_23715001 RAL-303_100b 2385 chr2R 23744739 23744793 chr2R 23744843 23744897 32 102 41.5 39.0 40.2 0.8 158 chr2R 23744739 intron egl - chr2R 23744818 intron egl - chr2R 23744897 intron egl - chr2R_32_23740001 chr2R_23740001 RAL-303_100b 2386 chr2R 23771252 23771307 chr2R 23771357 23771410 23 103 3.0 0.0 1.5 9.2 158 chr2R 23771252 intron CG9850 - chr2R 23771331 intron CG9850 - chr2R 23771410 intron CG9850 - chr2R_23_23770001 chr2R_23770001 RAL-303_100b 2387 chr2R 23784448 23784475 chr2R 23784551 23784578 30 102 28.5 18.5 23.5 1.2 130 chr2R 23784448 intron CG9850 - chr2R 23784513 intron CG9850 - chr2R 23784578 intron CG9850 - chr2R_30_23780001 chr2R_23780001 RAL-303_100b 2388 chr2R 23784477 23784507 chr2R 23784548 23784610 27 101 17.0 19.5 18.2 1.4 133 chr2R 23784477 intron CG9850 - chr2R 23784544 intron CG9850 - chr2R 23784610 intron CG9850 - chr2R_27_23780001 chr2R_23780001 RAL-303_100b 2389 chr2R 23799198 23799251 chr2R 23799306 23799354 29 104 33.5 24.5 29.0 1.0 156 chr2R 23799198 intergenic not near genes chr2R 23799276 intergenic not near genes chr2R 23799354 intergenic not near genes chr2R_29_23795001 chr2R_23795001 RAL-303_100b 2390 chr2R 23819887 23819946 chr2R 23820003 23820059 17 115 42.0 37.0 39.5 0.4 172 chr2R 23819887 intergenic CG5549 + chr2R 23819973 intergenic CG5549 + chr2R 23820059 intergenic CG5549 + chr2R_17_23815001 chr2R_23815001 RAL-303_100b 2391 chr2R 23831274 23831309 chr2R 23831381 23831407 12 101 50.5 47.5 49.0 0.2 133 chr2R 23831274 intron CG5549 + chr2R 23831340 intron CG5549 + chr2R 23831407 intron CG5549 + chr2R_12_23830001 chr2R_23830001 RAL-303_100b 2392 chr2R 23840147 23840180 chr2R 23844520 23844564 26 4372 101.5 105.5 103.5 0.2 4417 chr2R 23840147 intergenic snoRNA:Psi18S-176 -,CG5549 +,CR44805 + chr2R 23842356 exon shu - chr2R 23844564 exon Snap29 - chr2R_26_23840001 chr2R_23840001 RAL-303_100b 2393 chr2R 23914272 23914332 chr2R 23921921 23921961 412 77 7646 13.0 18.0 15.5 4.7 7689 chr2R 23914272 exon kcc + chr2R 23918116 intron kcc + chr2R 23921961 intron kcc + chr2R_77_23915001 chr2R_23915001 RAL-303_100b 2394 chr2R 23986393 23986447 chr2R 23986501 23986555 30 108 53.0 53.5 53.2 0.6 162 chr2R 23986393 exon Phm - chr2R 23986474 intron Phm - chr2R 23986555 intron Phm - chr2R_30_23985001 chr2R_23985001 RAL-303_100b 2395 chr2R 24031356 24031395 chr2R 24031465 24031493 43 106 23.0 17.0 20.0 2.0 137 chr2R 24031356 5` UTR CG30172 - chr2R 24031424 5` UTR CG30172 - chr2R 24031493 intergenic Chi -,CG30172 - chr2R_43_24030001 chr2R_24030001 RAL-303_100b 2396 chr2R 24031396 24031413 chr2R 24031463 24031509 20 101 13.5 16.5 15.0 1.2 113 chr2R 24031396 5` UTR CG30172 - chr2R 24031452 intergenic CG30172 -,Chi - chr2R 24031509 intergenic Chi -,CG30172 - chr2R_20_24030001 chr2R_24030001 RAL-303_100b 2397 chr2R 24147052 24147097 chr2R 24154644 24154688 412 37 7598 14.5 19.5 17.0 2.1 7636 chr2R 24147052 intron Dat + chr2R 24150870 intron Dat + chr2R 24154688 intron Dat + chr2R_37_24150001 chr2R_24150001 RAL-303_100b 2398 chr2R 24177209 24177266 chr2R 24184719 24184771 412 65 7508 18.5 17.0 17.8 3.5 7562 chr2R 24177209 3` UTR Nop60B + chr2R 24180990 intron Nop60B + chr2R 24184771 3` UTR Nop60B + chr2R_65_24180001 chr2R_24180001 RAL-303_100b 2399 chr2R 24212308 24212357 chr2R 24212431 24212480 40 121 14.5 10.0 12.2 3.0 172 chr2R 24212308 intergenic CG30419 - chr2R 24212394 intergenic CG30419 - chr2R 24212480 intergenic CG30419 - chr2R_40_24210001 chr2R_24210001 RAL-303_100b 2400 chr2R 24303498 24303537 chr2R 24303602 24303632 12 98 39.5 40.5 40.0 0.3 134 chr2R 24303498 intergenic not near genes chr2R 24303565 intergenic not near genes chr2R 24303632 intergenic not near genes chr2R_12_24300001 chr2R_24300001 RAL-303_100b 2401 chr2R 24320166 24320205 chr2R 24320268 24320291 13 95 37.0 38.5 37.8 0.3 125 chr2R 24320166 intergenic not near genes chr2R 24320228 intergenic not near genes chr2R 24320291 intergenic not near genes chr2R_13_24320001 chr2R_24320001 RAL-303_100b 2402 chr2R 24331601 24331638 chr2R 24331701 24331728 8 110 39.5 43.5 41.5 0.2 127 chr2R 24331601 3` UTR slbo - chr2R 24331664 3` UTR slbo - chr2R 24331728 3` UTR slbo - chr2R_8_24330001 chr2R_24330001 RAL-303_100b 2403 chr2R 24353401 24353447 chr2R 24361788 24361828 roo 31 8384 19.5 15.5 17.5 1.7 8427 chr2R 24353401 intron,intron bs +,CR44811 - chr2R 24357614 intron,intron bs +,CR44811 - chr2R 24361828 intron,intron bs +,CR44811 - chr2R_31_24355001 chr2R_24355001 RAL-303_100b 2404 chr2R 24383800 24383850 chr2R 24383906 24383953 24 104 46.0 40.5 43.2 0.5 153 chr2R 24383800 intron mAChR-A - chr2R 24383876 intron mAChR-A - chr2R 24383953 exon mAChR-A - chr2R_24_24380001 chr2R_24380001 RAL-303_100b 2405 chr2R 24387807 24387846 chr2R 24388025 24388050 10 214 45.5 46.5 46.0 0.2 243 chr2R 24387807 intron mAChR-A - chr2R 24387928 intron mAChR-A - chr2R 24388050 intron mAChR-A - chr2R_10_24385001 chr2R_24385001 RAL-303_100b 2406 chr2R 24430920 24430922 chr2R 24431033 24431035 5 113 0.5 29.0 14.8 0.3 115 chr2R 24430920 intergenic CG15873 -,Pgam5-2 - chr2R 24430978 intergenic CG15873 -,Pgam5-2 - chr2R 24431035 intergenic Pgam5-2 -,CG15873 - chr2R_5_24430001 chr2R_24430001 RAL-303_100b 2407 chr2R 24430925 24430935 chr2R 24431026 24431048 10 111 0.0 24.0 12.0 0.8 123 chr2R 24430925 intergenic CG15873 -,Pgam5-2 - chr2R 24430986 intergenic CG15873 -,Pgam5-2 - chr2R 24431048 intergenic Pgam5-2 -,CG15873 - chr2R_10_24430001 chr2R_24430001 RAL-303_100b 2408 chr2R 24430936 24430949 chr2R 24431022 24431054 17 109 0.0 20.5 10.2 1.5 118 chr2R 24430936 intergenic CG15873 -,Pgam5-2 - chr2R 24430995 intergenic CG15873 -,Pgam5-2 - chr2R 24431054 intergenic Pgam5-2 -,CG15873 - chr2R_17_24430001 chr2R_24430001 RAL-303_100b 2409 chr2R 24437149 24437208 chr2R 24437263 24437322 25 112 49.5 57.0 53.2 0.5 173 chr2R 24437149 intergenic not near genes chr2R 24437236 intergenic not near genes chr2R 24437322 intergenic not near genes chr2R_25_24435001 chr2R_24435001 RAL-303_100b 2410 chr2R 24476292 24476305 chr2R 24476834 24476842 8 541 48.0 43.5 45.8 0.2 550 chr2R 24476292 intron CG13579 + chr2R 24476567 intron CG13579 + chr2R 24476842 intron CG13579 + chr2R_8_24475001 chr2R_24475001 RAL-303_100b 2411 chr2R 24476306 24476345 chr2R 24476833 24476864 19 536 37.0 42.5 39.8 0.5 558 chr2R 24476306 intron CG13579 + chr2R 24476585 intron CG13579 + chr2R 24476864 intron CG13579 + chr2R_19_24475001 chr2R_24475001 RAL-303_100b 2412 chr2R 24493061 24493119 chr2R 24493175 24493230 15 112 39.5 44.5 42.0 0.3 169 chr2R 24493061 intergenic CG13590 -,CG13589 - chr2R 24493146 intergenic CG13590 -,CG13589 - chr2R 24493230 intergenic CG13590 -,CG13589 - chr2R_15_24490001 chr2R_24490001 RAL-303_100b 2413 chr2R 24518007 24518046 chr2R 24518109 24518157 15 94 62.5 61.5 62.0 0.2 150 chr2R 24518007 intergenic not near genes chr2R 24518082 intergenic not near genes chr2R 24518157 intergenic not near genes chr2R_15_24515001 chr2R_24515001 RAL-303_100b 2414 chr2R 24590081 24590106 chr2R 24590203 24590239 12 130 57.0 51.5 54.2 0.2 158 chr2R 24590081 intron pio + chr2R 24590160 intron pio + chr2R 24590239 intron pio + chr2R_12_24590001 chr2R_24590001 RAL-303_100b 2415 chr2R 24592923 24592975 chr2R 24593041 24593093 28 112 60.0 34.5 47.2 0.6 170 chr2R 24592923 intron pio + chr2R 24593008 intron pio + chr2R 24593093 intron pio + chr2R_28_24590001 chr2R_24590001 RAL-303_100b 2416 chr2R 24633971 24633979 chr2R 24634077 24634085 7 104 42.5 15.5 29.0 0.2 114 chr2R 24633971 intron CG13594 - chr2R 24634028 intron CG13594 - chr2R 24634085 intron CG13594 - chr2R_7_24630001 chr2R_24630001 RAL-303_100b 2417 chr2R 24633984 24633993 chr2R 24634075 24634078 12 94 34.0 15.5 24.8 0.5 94 chr2R 24633984 intron CG13594 - chr2R 24634031 intron CG13594 - chr2R 24634078 intron CG13594 - chr2R_12_24630001 chr2R_24630001 RAL-303_100b 2418 chr2R 24633994 24634025 chr2R 24634074 24634131 40 92 12.0 15.0 13.5 2.8 137 chr2R 24633994 intron CG13594 - chr2R 24634062 intron CG13594 - chr2R 24634131 intron CG13594 - chr2R_40_24630001 chr2R_24630001 RAL-303_100b 2419 chr2R 24636879 24636908 chr2R 24636990 24637019 20 111 43.0 32.5 37.8 0.5 140 chr2R 24636879 intron CG13594 - chr2R 24636949 intron CG13594 - chr2R 24637019 intron CG13594 - chr2R_20_24635001 chr2R_24635001 RAL-303_100b 2420 chr2R 24647550 24647563 chr2R 24655146 24655159 412 12 7595 22.5 16.0 19.2 0.6 7609 chr2R 24647550 intergenic not near genes chr2R 24651354 intergenic not near genes chr2R 24655159 intergenic not near genes chr2R_12_24650001 chr2R_24650001 RAL-303_100b 2421 chr2R 24647564 24647618 chr2R 24655145 24655200 412 31 7584 0.0 15.0 7.5 3.6 7636 chr2R 24647564 intergenic not near genes chr2R 24651382 intergenic not near genes chr2R 24655200 intergenic not near genes chr2R_31_24650001 chr2R_24650001 RAL-303_100b 2422 chr2R 24687621 24687668 chr2R 24687723 24687778 22 104 47.0 50.5 48.8 0.4 157 chr2R 24687621 intergenic Mmp1 - chr2R 24687700 intergenic Mmp1 - chr2R 24687778 intergenic Mmp1 - chr2R_22_24685001 chr2R_24685001 RAL-303_100b 2423 chr2R 24718440 24718485 chr2R 24718541 24718590 28 102 53.0 50.0 51.5 0.5 150 chr2R 24718440 intron Mid1 - chr2R 24718515 intron Mid1 - chr2R 24718590 intron Mid1 - chr2R_28_24715001 chr2R_24715001 RAL-303_100b 2424 chr2R 24719808 24719826 chr2R 24719919 24719963 18 127 31.5 55.5 43.5 0.4 155 chr2R 24719808 intron Mid1 - chr2R 24719886 intron Mid1 - chr2R 24719963 intron Mid1 - chr2R_18_24715001 chr2R_24715001 RAL-303_100b 2425 chr2R 24727858 24727918 chr2R 24735391 24735447 mdg1 58 7525 10.5 16.0 13.2 4.1 7589 chr2R 24727858 intron Mid1 - chr2R 24731652 intron Mid1 - chr2R 24735447 intron Mid1 - chr2R_58_24730001 chr2R_24730001 RAL-303_100b 2426 chr2R 24763584 24763642 chr2R 24765585 24765638 G2 53 1997 14.0 16.5 15.2 3.3 2054 chr2R 24763584 exon CG3894 + chr2R 24764611 intron CG3894 + chr2R 24765638 exon CG3894 + chr2R_53_24760001 chr2R_24760001 RAL-303_100b 2427 chr2R 24798374 24798431 chr2R 24798732 24798781 20 355 45.5 50.5 48.0 0.4 407 chr2R 24798374 exon CG12849 + chr2R 24798578 exon CG12849 + chr2R 24798781 intergenic CG3611 +,CG12849 + chr2R_20_24795001 chr2R_24795001 RAL-303_100b 2428 chr2R 24859817 24859870 chr2R 24859925 24859981 40 108 20.0 9.5 14.8 2.5 164 chr2R 24859817 5` UTR CR44829 + chr2R 24859899 5` UTR CR44829 + chr2R 24859981 5` UTR CR44829 + chr2R_40_24855001 chr2R_24855001 RAL-303_100b 2429 chr2R 24884025 24884079 chr2R 24884132 24884186 73 106 12.5 15.5 14.0 4.9 161 chr2R 24884025 intron NKAIN + chr2R 24884106 intron NKAIN + chr2R 24884186 intron NKAIN + chr2R_73_24880001 chr2R_24880001 RAL-303_100b 2430 chr2R 24919063 24919115 chr2R 24919342 24919394 33 278 55.0 40.0 47.5 0.7 331 chr2R 24919063 3` UTR NaCP60E + chr2R 24919228 3` UTR NaCP60E + chr2R 24919394 3` UTR NaCP60E + chr2R_33_24915001 chr2R_24915001 RAL-303_100b 2431 chr2R 24920368 24920403 chr2R 24920747 24920782 21 376 45.5 50.5 48.0 0.4 414 chr2R 24920368 3` UTR NaCP60E + chr2R 24920575 3` UTR NaCP60E + chr2R 24920782 3` UTR NaCP60E + chr2R_21_24920001 chr2R_24920001 RAL-303_100b 2432 chr2R 24928233 24928285 chr2R 24928406 24928447 19 170 47.5 33.5 40.5 0.5 214 chr2R 24928233 intron pain - chr2R 24928340 intergenic pain -,CG30427 - chr2R 24928447 intergenic pain -,CG30427 - chr2R_19_24925001 chr2R_24925001 RAL-303_100b 2433 chr2R 25004869 25004918 chr2R 25004970 25005007 23 100 50.5 51.5 51.0 0.4 138 chr2R 25004869 intron zip - chr2R 25004938 intron zip - chr2R 25005007 intron zip - chr2R_23_25000001 chr2R_25000001 RAL-303_100b 2434 chr2R 25014520 25014574 chr2R 25014621 25014675 37 97 33.5 31.0 32.2 1.1 155 chr2R 25014520 intron uzip + chr2R 25014598 intron uzip + chr2R 25014675 intron uzip + chr2R_37_25010001 chr2R_25010001 RAL-303_100b 2435 chr2R 25016917 25016971 chr2R 25017129 25017183 27 205 53.5 55.0 54.2 0.5 266 chr2R 25016917 intron uzip + chr2R 25017050 intron uzip + chr2R 25017183 intron uzip + chr2R_27_25015001 chr2R_25015001 RAL-303_100b 2436 chr2R 25018317 25018371 chr2R 25018443 25018497 27 123 49.0 49.0 49.0 0.5 180 chr2R 25018317 intron uzip + chr2R 25018407 intron uzip + chr2R 25018497 intron uzip + chr2R_27_25015001 chr2R_25015001 RAL-303_100b 2437 chr2R 25022617 25022673 chr2R 25022726 25022782 60 108 15.0 16.5 15.8 3.6 165 chr2R 25022617 intron uzip + chr2R 25022700 intron uzip + chr2R 25022782 intron uzip + chr2R_60_25020001 chr2R_25020001 RAL-303_100b 2438 chr2R 25061979 25062012 chr2R 25062072 25062116 15 97 33.5 43.5 38.5 0.4 137 chr2R 25061979 5` UTR gsb + chr2R 25062048 5` UTR gsb + chr2R 25062116 5` UTR gsb + chr2R_15_25060001 chr2R_25060001 RAL-303_100b 2439 chr2R 25076181 25076185 chr2R 25076495 25076499 4 314 75.0 38.0 56.5 0.1 318 chr2R 25076181 intron gol - chr2R 25076340 intron gol - chr2R 25076499 intron gol - chr2R_4_25075001 chr2R_25075001 RAL-303_100b 2440 chr2R 25078972 25079004 chr2R 25079119 25079140 16 149 47.0 45.5 46.2 0.3 168 chr2R 25078972 intron gol - chr2R 25079056 intron gol - chr2R 25079140 intron gol - chr2R_16_25075001 chr2R_25075001 RAL-303_100b 2441 chr2R 25079007 25079014 chr2R 25079116 25079167 7 144 46.5 44.5 45.5 0.2 160 chr2R 25079007 intron gol - chr2R 25079087 intron gol - chr2R 25079167 intron gol - chr2R_7_25075001 chr2R_25075001 RAL-303_100b 2442 chr2R 25080283 25080337 chr2R 25080678 25080736 32 392 49.0 52.5 50.8 0.6 453 chr2R 25080283 intron gol - chr2R 25080510 intron gol - chr2R 25080736 intron gol - chr2R_32_25080001 chr2R_25080001 RAL-303_100b 2443 chr2R 25081580 25081639 chr2R 25082701 25082760 37 1117 42.5 44.0 43.2 0.8 1180 chr2R 25081580 intron gol - chr2R 25082170 intron gol - chr2R 25082760 intron gol - chr2R_37_25080001 chr2R_25080001 RAL-303_100b 2444 chr2R 25082225 25082262 chr2R 25082585 25082622 15 359 6.5 6.5 6.5 2.0 397 chr2R 25082225 intron gol - chr2R 25082424 intron gol - chr2R 25082622 intron gol - chr2R_15_25080001 chr2R_25080001 RAL-303_100b 2445 chr2R 25083004 25083015 chr2R 25083114 25083124 6 109 48.0 25.0 36.5 0.2 120 chr2R 25083004 intron gol - chr2R 25083064 intron gol - chr2R 25083124 intron gol - chr2R_6_25080001 chr2R_25080001 RAL-303_100b 2446 chr2R 25099245 25099264 chr2R 25099314 25099351 6 69 20.5 28.5 24.5 0.2 106 chr2R 25099245 intron lov - chr2R 25099298 intron lov - chr2R 25099351 intron lov - chr2R_6_25095001 chr2R_25095001 RAL-303_100b 2447 chr2R 25101249 25101308 chr2R 25101376 25101424 64 125 19.5 19.5 19.5 3.1 175 chr2R 25101249 intron lov - chr2R 25101336 intron lov - chr2R 25101424 intron lov - chr2R_64_25100001 chr2R_25100001 RAL-303_100b 2448 chr2R 25104750 25104808 chr2R 25104900 25104958 38 146 42.5 43.5 43.0 0.9 208 chr2R 25104750 intron lov - chr2R 25104854 intron lov - chr2R 25104958 intron lov - chr2R_38_25100001 chr2R_25100001 RAL-303_100b 2449 chr2R 25122936 25122992 chr2R 25123040 25123086 22 102 33.0 27.5 30.2 0.7 150 chr2R 25122936 intron lov - chr2R 25123011 intron lov - chr2R 25123086 intron lov - chr2R_22_25120001 chr2R_25120001 RAL-303_100b 2450 chr2R 25130989 25131034 chr2R 25131091 25131136 24 101 32.0 25.5 28.8 0.8 147 chr2R 25130989 intron lov - chr2R 25131062 intron lov - chr2R 25131136 intron lov - chr2R_24_25130001 chr2R_25130001 RAL-303_100b 2451 chr2R 25141627 25141682 chr2R 25159342 25159397 roo 42 17714 16.0 15.5 15.8 2.5 17770 chr2R 25141627 intergenic not near genes chr2R 25150512 intergenic not near genes chr2R 25159397 intergenic not near genes chr2R_42_25150001 chr2R_25150001 RAL-303_100b 2452 chr2R 25180750 25180795 chr2R 25180845 25180897 29 101 40.5 42.0 41.2 0.7 147 chr2R 25180750 intergenic not near genes chr2R 25180824 intergenic not near genes chr2R 25180897 intergenic not near genes chr2R_29_25180001 chr2R_25180001 RAL-303_100b 2453 chr2R 25181092 25181131 chr2R 25181214 25181253 22 121 32.5 40.0 36.2 0.6 161 chr2R 25181092 intergenic not near genes chr2R 25181172 intergenic not near genes chr2R 25181253 intergenic not near genes chr2R_22_25180001 chr2R_25180001 RAL-303_100b 2454 chr2R 25191706 25191720 chr2R 25191809 25191823 7 101 13.0 10.5 11.8 0.5 117 chr2R 25191706 intron CG9380 - chr2R 25191764 intron CG9380 - chr2R 25191823 intron CG9380 - chr2R_7_25190001 chr2R_25190001 RAL-303_100b 2455 chr2R 25193315 25193370 chr2R 25193482 25193539 24 170 8.5 7.0 7.8 2.7 224 chr2R 25193315 intron CG9380 - chr2R 25193427 intron CG9380 - chr2R 25193539 intron CG9380 - chr2R_24_25190001 chr2R_25190001 RAL-303_100b 2456 chr2R 25236012 25236043 chr2R 25236148 25236179 15 133 33.0 40.5 36.8 0.4 167 chr2R 25236012 intron CG9380 - chr2R 25236096 intron CG9380 - chr2R 25236179 intron CG9380 - chr2R_15_25235001 chr2R_25235001 RAL-303_100b 2457 chr2R 25243950 25244007 chr2R 25244053 25244110 33 102 35.5 33.0 34.2 0.9 160 chr2R 25243950 intron CG9380 - chr2R 25244030 intron CG9380 - chr2R 25244110 intron CG9380 - chr2R_33_25240001 chr2R_25240001 RAL-303_100b 2458 chr2R 25253421 25253429 chr2R 25253522 25253529 10 101 39.0 15.5 27.2 0.4 108 chr2R 25253421 intron,intron CG9380 -,CG30428 + chr2R 25253475 intron,intron CG9380 -,CG30428 + chr2R 25253529 intron,intron CG9380 -,CG30428 + chr2R_10_25250001 chr2R_25250001 RAL-303_100b 2459 chr2R 25253430 25253479 chr2R 25253521 25253581 36 100 16.5 15.0 15.8 2.1 151 chr2R 25253430 intron,intron CG9380 -,CG30428 + chr2R 25253506 intron,intron CG9380 -,CG30428 + chr2R 25253581 intron,5` UTR CG9380 -,CG30428 + chr2R_36_25250001 chr2R_25250001 RAL-303_100b 2460 chr3L 51362 51388 chr3L 51485 51511 12 123 54.0 40.0 47.0 0.2 149 chr3L 51362 intergenic not near genes chr3L 51436 intergenic not near genes chr3L 51511 intergenic not near genes chr3L_12_50001 chr3L_50001 RAL-303_100b 2461 chr3L 51389 51415 chr3L 51481 51538 22 118 49.5 39.0 44.2 0.5 149 chr3L 51389 intergenic not near genes chr3L 51464 intergenic not near genes chr3L 51538 intergenic not near genes chr3L_22_50001 chr3L_50001 RAL-303_100b 2462 chr3L 57755 57807 chr3L 57860 57912 29 104 51.5 57.0 54.2 0.5 157 chr3L 57755 intergenic not near genes chr3L 57834 intergenic not near genes chr3L 57912 intergenic not near genes chr3L_29_55001 chr3L_55001 RAL-303_100b 2463 chr3L 68957 69012 chr3L 69069 69108 30 108 34.0 35.0 34.5 0.8 151 chr3L 68957 3` UTR Lsp1gamma + chr3L 69032 intergenic Lsp1gamma +,CR44510 + chr3L 69108 intergenic CR44510 +,Lsp1gamma + chr3L_30_65001 chr3L_65001 RAL-303_100b 2464 chr3L 90204 90265 chr3L 90314 90375 23 107 45.0 44.5 44.8 0.5 171 chr3L 90204 intergenic not near genes chr3L 90290 intergenic not near genes chr3L 90375 intergenic not near genes chr3L_23_90001 chr3L_90001 RAL-303_100b 2465 chr3L 93777 93787 chr3L 93878 93882 7 103 49.5 42.5 46.0 0.1 105 chr3L 93777 intergenic not near genes chr3L 93830 intergenic not near genes chr3L 93882 intergenic not near genes chr3L_7_90001 chr3L_90001 RAL-303_100b 2466 chr3L 93789 93823 chr3L 93873 93922 22 99 42.5 42.5 42.5 0.5 133 chr3L 93789 intergenic not near genes chr3L 93856 intergenic not near genes chr3L 93922 intergenic not near genes chr3L_22_90001 chr3L_90001 RAL-303_100b 2467 chr3L 97884 97936 chr3L 98229 98283 32 348 32.0 47.5 39.8 0.8 399 chr3L 97884 3` UTR CG12483 - chr3L 98084 exon CG12483 - chr3L 98283 intron CG12483 - chr3L_32_95001 chr3L_95001 RAL-303_100b 2468 chr3L 105975 106028 chr3L 106129 106182 41 151 52.5 51.0 51.8 0.8 207 chr3L 105975 intergenic not near genes chr3L 106078 intergenic not near genes chr3L 106182 intergenic not near genes chr3L_41_105001 chr3L_105001 RAL-303_100b 2469 chr3L 108588 108626 chr3L 108756 108794 18 168 32.5 41.5 37.0 0.5 206 chr3L 108588 intergenic not near genes chr3L 108691 intergenic not near genes chr3L 108794 intergenic not near genes chr3L_18_105001 chr3L_105001 RAL-303_100b 2470 chr3L 110186 110241 chr3L 119378 119433 roo 40 9190 15.0 14.0 14.5 2.6 9247 chr3L 110186 intergenic not near genes chr3L 114810 intergenic not near genes chr3L 119433 intergenic not near genes chr3L_40_110001 chr3L_110001 RAL-303_100b 2471 chr3L 296046 296089 chr3L 296390 296408 19 341 35.0 42.0 38.5 0.5 362 chr3L 296046 intron RhoGEF3 + chr3L 296227 intron RhoGEF3 + chr3L 296408 intron RhoGEF3 + chr3L_19_295001 chr3L_295001 RAL-303_100b 2472 chr3L 343166 343177 chr3L 343314 343325 4 148 39.0 34.5 36.8 0.1 159 chr3L 343166 intron Ptpmeg + chr3L 343246 intron Ptpmeg + chr3L 343325 intron Ptpmeg + chr3L_4_340001 chr3L_340001 RAL-303_100b 2473 chr3L 365500 365555 chr3L 365611 365666 42 110 27.5 44.5 36.0 1.1 166 chr3L 365500 3` UTR CG1233 + chr3L 365583 3` UTR CG1233 + chr3L 365666 3` UTR,3` UTR CG1233 +,CG13884 - chr3L_42_365001 chr3L_365001 RAL-303_100b 2474 chr3L 375229 375280 chr3L 375338 375389 9 106 34.0 47.5 40.8 0.2 160 chr3L 375229 intron trh - chr3L 375309 intron trh - chr3L 375389 intron trh - chr3L_9_375001 chr3L_375001 RAL-303_100b 2475 chr3L 390942 390986 chr3L 391063 391097 27 128 27.0 25.5 26.2 1.0 155 chr3L 390942 intron trh - chr3L 391020 intron trh - chr3L 391097 intron trh - chr3L_27_390001 chr3L_390001 RAL-303_100b 2476 chr3L 402662 402718 chr3L 409740 409796 297 69 7075 15.5 20.0 17.8 3.7 7134 chr3L 402662 intergenic not near genes chr3L 406229 intergenic not near genes chr3L 409796 intergenic not near genes chr3L_69_405001 chr3L_405001 RAL-303_100b 2477 chr3L 418964 419019 chr3L 419066 419121 36 98 46.0 42.0 44.0 0.8 157 chr3L 418964 intergenic not near genes chr3L 419042 intergenic not near genes chr3L 419121 intergenic not near genes chr3L_36_415001 chr3L_415001 RAL-303_100b 2478 chr3L 421030 421073 chr3L 421151 421194 45 119 15.0 14.5 14.8 2.8 164 chr3L 421030 intergenic not near genes chr3L 421112 intergenic not near genes chr3L 421194 intergenic not near genes chr3L_45_420001 chr3L_420001 RAL-303_100b 2479 chr3L 421074 421085 chr3L 421150 421206 8 110 11.0 13.0 12.0 0.6 132 chr3L 421074 intergenic not near genes chr3L 421140 intergenic not near genes chr3L 421206 intergenic not near genes chr3L_8_420001 chr3L_420001 RAL-303_100b 2480 chr3L 507026 507083 chr3L 507137 507192 27 109 33.5 31.0 32.2 0.8 166 chr3L 507026 intron klar - chr3L 507109 intron klar - chr3L 507192 intron klar - chr3L_27_505001 chr3L_505001 RAL-303_100b 2481 chr3L 508471 508530 chr3L 508582 508630 36 109 46.0 49.5 47.8 0.7 159 chr3L 508471 exon klar - chr3L 508550 5` UTR klar - chr3L 508630 5` UTR klar - chr3L_36_505001 chr3L_505001 RAL-303_100b 2482 chr3L 524721 524775 chr3L 524829 524882 16 106 40.5 46.0 43.2 0.4 161 chr3L 524721 intron klar - chr3L 524802 intron klar - chr3L 524882 intron klar - chr3L_16_520001 chr3L_520001 RAL-303_100b 2483 chr3L 561457 561493 chr3L 561559 561589 12 101 31.0 16.5 23.8 0.5 132 chr3L 561457 intron hipk + chr3L 561523 intron hipk + chr3L 561589 intron hipk + chr3L_12_560001 chr3L_560001 RAL-303_100b 2484 chr3L 563944 564002 chr3L 564148 564186 32 201 47.5 49.5 48.5 0.6 242 chr3L 563944 intron hipk + chr3L 564065 intron hipk + chr3L 564186 intron hipk + chr3L_32_560001 chr3L_560001 RAL-303_100b 2485 chr3L 564458 564516 chr3L 564575 564575 35 110 36.5 37.0 36.8 0.9 117 chr3L 564458 intron hipk + chr3L 564516 intron hipk + chr3L 564575 intron hipk + chr3L_35_560001 chr3L_560001 RAL-303_100b 2486 chr3L 566771 566822 chr3L 567149 567200 20 376 36.0 45.5 40.8 0.5 429 chr3L 566771 intron hipk + chr3L 566986 intron hipk + chr3L 567200 intron hipk + chr3L_20_565001 chr3L_565001 RAL-303_100b 2487 chr3L 606871 606923 chr3L 606972 607025 13 103 39.0 31.0 35.0 0.4 154 chr3L 606871 intergenic Reg-2 - chr3L 606948 intergenic Reg-2 - chr3L 607025 intergenic Reg-2 - chr3L_13_605001 chr3L_605001 RAL-303_100b 2488 chr3L 642451 642460 chr3L 642567 642575 5 115 51.0 35.5 43.2 0.1 124 chr3L 642451 5` UTR CR43334 + chr3L 642513 5` UTR CR43334 + chr3L 642575 5` UTR CR43334 + chr3L_5_640001 chr3L_640001 RAL-303_100b 2489 chr3L 642465 642499 chr3L 642566 642615 21 113 30.5 35.5 33.0 0.6 150 chr3L 642465 5` UTR CR43334 + chr3L 642540 5` UTR CR43334 + chr3L 642615 5` UTR CR43334 + chr3L_21_640001 chr3L_640001 RAL-303_100b 2490 chr3L 643825 643826 chr3L 21448026 21448027 5 20804201 74.0 77.5 75.8 0.1 20804202 chr3L 643825 5` UTR CR43334 + chr3L 11045926 intron CG43693 - chr3L 21448027 3` UTR Syx7 + chr3L_5_11045001 chr3L_11045001 RAL-303_100b 2491 chr3L 646768 646821 chr3L 646870 646871 30 101 47.0 40.0 43.5 0.7 103 chr3L 646768 intergenic not near genes chr3L 646820 intergenic not near genes chr3L 646871 intergenic not near genes chr3L_30_645001 chr3L_645001 RAL-303_100b 2492 chr3L 662889 662945 chr3L 662995 663014 17 96 41.5 26.0 33.8 0.5 125 chr3L 662889 intergenic not near genes chr3L 662952 intergenic not near genes chr3L 663014 intergenic not near genes chr3L_17_660001 chr3L_660001 RAL-303_100b 2493 chr3L 665844 665885 chr3L 665952 665993 16 108 39.5 45.5 42.5 0.4 149 chr3L 665844 intergenic not near genes chr3L 665918 intergenic not near genes chr3L 665993 intergenic not near genes chr3L_16_665001 chr3L_665001 RAL-303_100b 2494 chr3L 709545 709596 chr3L 709658 709709 14 112 37.0 32.0 34.5 0.4 164 chr3L 709545 intron CkIIalpha-i3 - chr3L 709627 intron CkIIalpha-i3 - chr3L 709709 intron CkIIalpha-i3 - chr3L_14_705001 chr3L_705001 RAL-303_100b 2495 chr3L 728002 728007 chr3L 728103 728108 6 99 43.5 54.5 49.0 0.1 106 chr3L 728002 intergenic not near genes chr3L 728055 intergenic not near genes chr3L 728108 intergenic not near genes chr3L_6_725001 chr3L_725001 RAL-303_100b 2496 chr3L 789888 789946 chr3L 790398 790456 roo 28 508 8.5 7.5 8.0 3.1 568 chr3L 789888 intergenic not near genes chr3L 790172 intergenic not near genes chr3L 790456 intergenic not near genes chr3L_28_790001 chr3L_790001 RAL-303_100b 2497 chr3L 809324 809372 chr3L 809451 809499 21 124 45.0 52.5 48.8 0.4 175 chr3L 809324 intergenic not near genes chr3L 809412 intergenic not near genes chr3L 809499 intergenic not near genes chr3L_21_805001 chr3L_805001 RAL-303_100b 2498 chr3L 827505 827558 chr3L 827606 827659 25 100 43.0 37.0 40.0 0.6 154 chr3L 827505 intron,intron CG13900 -,CR45184 - chr3L 827582 intron,intron,3` UTR CG13900 -,CR45184 -,snoRNA:Me28S-G3113b - chr3L 827659 3` UTR,3` UTR CG13900 -,CR45184 - chr3L_25_825001 chr3L_825001 RAL-303_100b 2499 chr3L 854157 854202 chr3L 854260 854304 18 102 22.0 24.5 23.2 0.7 147 chr3L 854157 intron dpr20 - chr3L 854230 intron dpr20 - chr3L 854304 exon dpr20 - chr3L_18_850001 chr3L_850001 RAL-303_100b 2500 chr3L 857974 857987 chr3L 866480 866485 Tirant 6 8505 32.0 18.0 25.0 0.2 8511 chr3L 857974 intergenic not near genes chr3L 862230 intergenic not near genes chr3L 866485 intergenic CG12502 + chr3L_6_860001 chr3L_860001 RAL-303_100b 2501 chr3L 857988 858028 chr3L 866478 866519 Tirant 32 8493 14.0 17.0 15.5 1.9 8531 chr3L 857988 intergenic not near genes chr3L 862254 intergenic not near genes chr3L 866519 5` UTR CG12502 + chr3L_32_860001 chr3L_860001 RAL-303_100b 2502 chr3L 899996 900020 chr3L 900105 900129 10 108 30.5 53.0 41.8 0.2 133 chr3L 899996 intergenic not near genes chr3L 900062 intergenic not near genes chr3L 900129 intergenic not near genes chr3L_10_900001 chr3L_900001 RAL-303_100b 2503 chr3L 905081 905094 chr3L 905159 905203 5 103 34.5 33.5 34.0 0.1 122 chr3L 905081 intergenic not near genes chr3L 905142 intergenic not near genes chr3L 905203 intergenic not near genes chr3L_5_905001 chr3L_905001 RAL-303_100b 2504 chr3L 925156 925170 chr3L 932607 932621 mdg1 19 7450 31.5 21.0 26.2 0.7 7465 chr3L 925156 intron Glut1 + chr3L 928888 intron Glut1 + chr3L 932621 intron Glut1 + chr3L_19_925001 chr3L_925001 RAL-303_100b 2505 chr3L 925171 925210 chr3L 932601 932661 mdg1 45 7448 8.5 16.5 12.5 3.3 7490 chr3L 925171 intron Glut1 + chr3L 928916 intron Glut1 + chr3L 932661 intron Glut1 + chr3L_45_925001 chr3L_925001 RAL-303_100b 2506 chr3L 933847 933944 chr3L 934005 934069 46 146 3.5 12.0 7.8 5.2 222 chr3L 933847 intron Glut1 + chr3L 933958 intron Glut1 + chr3L 934069 intron Glut1 + chr3L_46_930001 chr3L_930001 RAL-303_100b 2507 chr3L 939752 939768 chr3L 940898 940914 jockey 19 1146 27.0 26.5 26.8 0.7 1162 chr3L 939752 intron Glut1 + chr3L 940333 intron Glut1 + chr3L 940914 intron Glut1 + chr3L_19_940001 chr3L_940001 RAL-303_100b 2508 chr3L 939769 939797 chr3L 940897 940943 jockey 39 1143 15.0 25.5 20.2 1.8 1174 chr3L 939769 intron Glut1 + chr3L 940356 intron Glut1 + chr3L 940943 intron Glut1 + chr3L_39_940001 chr3L_940001 RAL-303_100b 2509 chr3L 960993 961044 chr3L 961111 961162 34 117 9.5 17.5 13.5 2.3 169 chr3L 960993 intron Glut1 + chr3L 961078 intron Glut1 + chr3L 961162 intron Glut1 + chr3L_34_960001 chr3L_960001 RAL-303_100b 2510 chr3L 986615 986655 chr3L 986716 986756 32 101 18.5 20.5 19.5 1.6 141 chr3L 986615 intergenic not near genes chr3L 986686 intergenic not near genes chr3L 986756 intergenic not near genes chr3L_32_985001 chr3L_985001 RAL-303_100b 2511 chr3L 986660 986663 chr3L 986714 986764 7 94 16.0 20.0 18.0 0.4 104 chr3L 986660 intergenic not near genes chr3L 986712 intergenic not near genes chr3L 986764 intergenic not near genes chr3L_7_985001 chr3L_985001 RAL-303_100b 2512 chr3L 1001843 1001875 chr3L 1001946 1001978 9 101 46.5 57.0 51.8 0.2 135 chr3L 1001843 intron trio - chr3L 1001910 intron trio - chr3L 1001978 intron trio - chr3L_9_1000001 chr3L_1000001 RAL-303_100b 2513 chr3L 1003028 1003081 chr3L 1003130 1003183 38 100 30.5 27.5 29.0 1.3 155 chr3L 1003028 intron trio - chr3L 1003106 intron trio - chr3L 1003183 intron trio - chr3L_38_1000001 chr3L_1000001 RAL-303_100b 2514 chr3L 1015005 1015035 chr3L 1015142 1015172 13 136 30.5 19.5 25.0 0.5 167 chr3L 1015005 intron trio - chr3L 1015088 intron trio - chr3L 1015172 intron trio - chr3L_13_1015001 chr3L_1015001 RAL-303_100b 2515 chr3L 1015037 1015051 chr3L 1015139 1015183 10 123 18.0 17.0 17.5 0.5 146 chr3L 1015037 intron trio - chr3L 1015110 intron trio - chr3L 1015183 intron trio - chr3L_10_1015001 chr3L_1015001 RAL-303_100b 2516 chr3L 1031555 1031609 chr3L 1031651 1031680 36 91 19.5 14.0 16.8 2.0 125 chr3L 1031555 intron trio - chr3L 1031618 intron trio - chr3L 1031680 intron trio - chr3L_36_1030001 chr3L_1030001 RAL-303_100b 2517 chr3L 1033329 1033346 chr3L 1033441 1033466 12 120 0.0 0.0 0.0 12.0 137 chr3L 1033329 intron trio - chr3L 1033398 intron trio - chr3L 1033466 intron trio - chr3L_12_1030001 chr3L_1030001 RAL-303_100b 2518 chr3L 1040525 1040565 chr3L 1040634 1040674 30 108 28.5 22.5 25.5 1.1 149 chr3L 1040525 intron bab1 - chr3L 1040600 intron bab1 - chr3L 1040674 intron bab1 - chr3L_30_1040001 chr3L_1040001 RAL-303_100b 2519 chr3L 1047325 1047385 chr3L 1055162 1055213 412 30 7830 11.5 11.5 11.5 2.4 7888 chr3L 1047325 intron bab1 - chr3L 1051269 intron bab1 - chr3L 1055213 intron bab1 - chr3L_30_1050001 chr3L_1050001 RAL-303_100b 2520 chr3L 1095010 1095031 chr3L 1095103 1095137 8 99 13.5 8.0 10.8 0.7 127 chr3L 1095010 intron bab1 - chr3L 1095074 intron bab1 - chr3L 1095137 intron bab1 - chr3L_8_1095001 chr3L_1095001 RAL-303_100b 2521 chr3L 1095032 1095049 chr3L 1095100 1095139 10 83 10.5 8.0 9.2 1.0 107 chr3L 1095032 intron bab1 - chr3L 1095086 intron bab1 - chr3L 1095139 intron bab1 - chr3L_10_1095001 chr3L_1095001 RAL-303_100b 2522 chr3L 1103969 1104012 chr3L 1104185 1104228 28 216 36.0 14.0 25.0 1.1 259 chr3L 1103969 intergenic not near genes chr3L 1104098 intergenic not near genes chr3L 1104228 intergenic not near genes chr3L_28_1100001 chr3L_1100001 RAL-303_100b 2523 chr3L 1109620 1109661 chr3L 1109733 1109774 17 111 21.0 28.0 24.5 0.7 154 chr3L 1109620 intergenic not near genes chr3L 1109697 intergenic not near genes chr3L 1109774 intergenic not near genes chr3L_17_1105001 chr3L_1105001 RAL-303_100b 2524 chr3L 1143910 1143957 chr3L 1144033 1144079 14 120 38.5 52.5 45.5 0.3 169 chr3L 1143910 exon bab2 - chr3L 1143994 intron bab2 - chr3L 1144079 intron bab2 - chr3L_14_1140001 chr3L_1140001 RAL-303_100b 2525 chr3L 1145225 1145268 chr3L 1145329 1145372 15 101 46.0 33.0 39.5 0.4 147 chr3L 1145225 intron bab2 - chr3L 1145298 intron bab2 - chr3L 1145372 intron bab2 - chr3L_15_1145001 chr3L_1145001 RAL-303_100b 2526 chr3L 1154109 1154162 chr3L 1163284 1163327 roo 41 9170 15.5 13.5 14.5 2.6 9218 chr3L 1154109 intron bab2 - chr3L 1158718 intron bab2 - chr3L 1163327 intron bab2 - chr3L_41_1155001 chr3L_1155001 RAL-303_100b 2527 chr3L 1167000 1167014 chr3L 1167102 1167116 10 102 10.5 14.5 12.5 0.7 116 chr3L 1167000 intron bab2 - chr3L 1167058 intron bab2 - chr3L 1167116 intron bab2 - chr3L_10_1165001 chr3L_1165001 RAL-303_100b 2528 chr3L 1175882 1175889 chr3L 1175990 1175997 5 108 55.0 34.5 44.8 0.1 115 chr3L 1175882 intron bab2 - chr3L 1175940 intron bab2 - chr3L 1175997 intron bab2 - chr3L_5_1175001 chr3L_1175001 RAL-303_100b 2529 chr3L 1175892 1175927 chr3L 1175987 1176035 16 106 38.5 34.0 36.2 0.4 143 chr3L 1175892 intron bab2 - chr3L 1175964 intron bab2 - chr3L 1176035 intron bab2 - chr3L_16_1175001 chr3L_1175001 RAL-303_100b 2530 chr3L 1195344 1195401 chr3L 1195573 1195630 9 229 35.0 23.5 29.2 0.3 286 chr3L 1195344 intergenic LysX - chr3L 1195487 intergenic LysX - chr3L 1195630 intergenic LysX - chr3L_9_1195001 chr3L_1195001 RAL-303_100b 2531 chr3L 1219569 1219625 chr3L 1227327 1227348 412 38 7748 10.0 15.0 12.5 2.8 7779 chr3L 1219569 intron mwh + chr3L 1223458 intron mwh + chr3L 1227348 intron mwh + chr3L_38_1220001 chr3L_1220001 RAL-303_100b 2532 chr3L 1236214 1236236 chr3L 1236316 1236338 14 100 13.0 4.0 8.5 1.5 124 chr3L 1236214 intron CG9194 + chr3L 1236276 intron CG9194 + chr3L 1236338 intron CG9194 + chr3L_14_1235001 chr3L_1235001 RAL-303_100b 2533 chr3L 1270717 1270770 chr3L 1270833 1270879 23 116 25.0 26.0 25.5 0.9 162 chr3L 1270717 intron CG9134 + chr3L 1270798 intron CG9134 + chr3L 1270879 intron CG9134 + chr3L_23_1270001 chr3L_1270001 RAL-303_100b 2534 chr3L 1284009 1284044 chr3L 1284134 1284169 5 125 28.0 45.0 36.5 0.1 160 chr3L 1284009 intron CG32333 + chr3L 1284089 intron CG32333 + chr3L 1284169 intron CG32333 + chr3L_5_1280001 chr3L_1280001 RAL-303_100b 2535 chr3L 1289999 1290053 chr3L 1290130 1290184 22 128 41.5 41.5 41.5 0.5 185 chr3L 1289999 exon CG32333 + chr3L 1290092 intron CG32333 + chr3L 1290184 intron CG32333 + chr3L_22_1290001 chr3L_1290001 RAL-303_100b 2536 chr3L 1315012 1315028 chr3L 1315115 1315131 10 102 123.0 122.0 122.5 0.1 119 chr3L 1315012 exon CG9153 + chr3L 1315072 exon CG9153 + chr3L 1315131 exon CG9153 + chr3L_10_1315001 chr3L_1315001 RAL-303_100b 2537 chr3L 1315033 1315054 chr3L 1315101 1315140 8 91 116.5 115.5 116.0 0.1 107 chr3L 1315033 exon CG9153 + chr3L 1315086 exon CG9153 + chr3L 1315140 exon CG9153 + chr3L_8_1315001 chr3L_1315001 RAL-303_100b 2538 chr3L 1310981 1311040 chr3L 1315816 1315875 56 4841 135.0 129.0 132.0 0.4 4894 chr3L 1310981 exon CG2469 + chr3L 1313428 intergenic CG9186 -,CG9153 + chr3L 1315875 exon CG9153 + chr3L_56_1310001 chr3L_1310001 RAL-303_100b 2539 chr3L 1347131 1347192 chr3L 1347241 1347288 24 103 48.5 54.5 51.5 0.5 157 chr3L 1347131 intron Ptp61F - chr3L 1347210 intron Ptp61F - chr3L 1347288 intron Ptp61F - chr3L_24_1345001 chr3L_1345001 RAL-303_100b 2540 chr3L 1368317 1368360 chr3L 1369564 1369606 21 1243 32.0 49.5 40.8 0.5 1289 chr3L 1368317 intron Ptp61F - chr3L 1368962 intron Ptp61F - chr3L 1369606 intron Ptp61F - chr3L_21_1365001 chr3L_1365001 RAL-303_100b 2541 chr3L 1372343 1372376 chr3L 1372440 1372479 11 101 37.0 35.5 36.2 0.3 136 chr3L 1372343 intron,intron Ptp61F -,ru + chr3L 1372411 intron,intron Ptp61F -,ru + chr3L 1372479 intron,intron Ptp61F -,ru + chr3L_11_1370001 chr3L_1370001 RAL-303_100b 2542 chr3L 1385149 1385210 chr3L 1385262 1385312 31 112 42.5 39.0 40.8 0.7 163 chr3L 1385149 intron,intron Ptp61F -,ru + chr3L 1385230 intron,intron Ptp61F -,ru + chr3L 1385312 intron,intron Ptp61F -,ru + chr3L_31_1385001 chr3L_1385001 RAL-303_100b 2543 chr3L 1396713 1396756 chr3L 1396822 1396861 34 105 53.5 43.0 48.2 0.7 148 chr3L 1396713 intron Ptp61F - chr3L 1396787 intron Ptp61F - chr3L 1396861 intron Ptp61F - chr3L_34_1395001 chr3L_1395001 RAL-303_100b 2544 chr3L 1424759 1424773 chr3L 1430023 1430036 Rt1a 13 5265 13.5 24.5 19.0 0.7 5277 chr3L 1424759 intron Ptp61F - chr3L 1427398 intron Ptp61F - chr3L 1430036 intron Ptp61F - chr3L_13_1425001 chr3L_1425001 RAL-303_100b 2545 chr3L 1477369 1477398 chr3L 1477483 1477507 13 114 19.5 12.5 16.0 0.8 138 chr3L 1477369 intron stet - chr3L 1477438 intron stet - chr3L 1477507 intron stet - chr3L_13_1475001 chr3L_1475001 RAL-303_100b 2546 chr3L 1485712 1485743 chr3L 1486908 1486938 1360 26 1192 22.0 45.0 33.5 0.8 1226 chr3L 1485712 intron stet - chr3L 1486325 intron stet - chr3L 1486938 intron stet - chr3L_26_1485001 chr3L_1485001 RAL-303_100b 2547 chr3L 1505982 1505983 chr3L 1513604 1513605 17.6 4 7622 53.5 24.0 38.8 0.1 7623 chr3L 1505982 intron,intron Psa +,cue - chr3L 1509794 intron,intron Psa +,cue - chr3L 1513605 intron,intron Psa +,cue - chr3L_4_1505001 chr3L_1505001 RAL-303_100b 2548 chr3L 1505988 1506000 chr3L 1513600 1513620 17.6 13 7619 37.5 21.5 29.5 0.4 7632 chr3L 1505988 intron,intron Psa +,cue - chr3L 1509804 intron,intron Psa +,cue - chr3L 1513620 intron,intron Psa +,cue - chr3L_13_1505001 chr3L_1505001 RAL-303_100b 2549 chr3L 1506002 1506029 chr3L 1513594 1513645 17.6 31 7614 18.5 18.5 18.5 1.6 7643 chr3L 1506002 intron,intron Psa +,cue - chr3L 1509824 intron,intron Psa +,cue - chr3L 1513645 intron,intron Psa +,cue - chr3L_31_1505001 chr3L_1505001 RAL-303_100b 2550 chr3L 1531363 1531414 chr3L 1535831 1535889 66 4475 125.0 128.5 126.8 0.5 4526 chr3L 1531363 intron CG12090 - chr3L 1533626 exon CG12090 - chr3L 1535889 exon CG12091 - chr3L_66_1530001 chr3L_1530001 RAL-303_100b 2551 chr3L 1571446 1571494 chr3L 1571556 1571572 23 106 9.0 19.0 14.0 1.5 126 chr3L 1571446 intron CG12004 + chr3L 1571509 intron CG12004 + chr3L 1571572 intron CG12004 + chr3L_23_1570001 chr3L_1570001 RAL-303_100b 2552 chr3L 1584117 1584123 chr3L 1584224 1584230 11 107 0.0 26.0 13.0 0.8 113 chr3L 1584117 intron CG13917 + chr3L 1584174 intron CG13917 + chr3L 1584230 intron CG13917 + chr3L_11_1580001 chr3L_1580001 RAL-303_100b 2553 chr3L 1585902 1585936 chr3L 1586010 1586044 28 107 3.5 0.5 2.0 9.3 142 chr3L 1585902 intron CG13917 + chr3L 1585973 intron CG13917 + chr3L 1586044 intron CG13917 + chr3L_28_1585001 chr3L_1585001 RAL-303_100b 2554 chr3L 1684013 1684046 chr3L 1684101 1684149 19 93 10.5 12.5 11.5 1.5 136 chr3L 1684013 intron CG7991 + chr3L 1684081 intron CG7991 + chr3L 1684149 intron CG7991 + chr3L_19_1680001 chr3L_1680001 RAL-303_100b 2555 chr3L 1688225 1688268 chr3L 1688379 1688422 13 153 10.5 4.5 7.5 1.5 197 chr3L 1688225 intron CG7991 + chr3L 1688324 intron CG7991 + chr3L 1688422 intron CG7991 + chr3L_13_1685001 chr3L_1685001 RAL-303_100b 2556 chr3L 1728498 1728553 chr3L 1728602 1728653 38 106 15.0 15.0 15.0 2.4 155 chr3L 1728498 intron drpr - chr3L 1728576 intron drpr - chr3L 1728653 intron drpr - chr3L_38_1725001 chr3L_1725001 RAL-303_100b 2557 chr3L 1740834 1740849 chr3L 1741101 1741117 pogo 12 267 38.0 22.5 30.2 0.4 283 chr3L 1740834 intron Gk + chr3L 1740976 intron Gk + chr3L 1741117 intron Gk + chr3L_12_1740001 chr3L_1740001 RAL-303_100b 2558 chr3L 1740850 1740870 chr3L 1741098 1741102 pogo 17 264 24.0 22.0 23.0 0.7 252 chr3L 1740850 intron Gk + chr3L 1740976 intron Gk + chr3L 1741102 intron Gk + chr3L_17_1740001 chr3L_1740001 RAL-303_100b 2559 chr3L 1740872 1740882 chr3L 1741097 1741150 pogo 7 254 18.0 22.0 20.0 0.3 278 chr3L 1740872 intron Gk + chr3L 1741011 intron Gk + chr3L 1741150 intron Gk + chr3L_7_1740001 chr3L_1740001 RAL-303_100b 2560 chr3L 1821612 1821650 chr3L 1821719 1821754 39 106 14.5 9.5 12.0 3.0 142 chr3L 1821612 intron GV1 + chr3L 1821683 intron GV1 + chr3L 1821754 intron GV1 + chr3L_39_1820001 chr3L_1820001 RAL-303_100b 2561 chr3L 1841551 1841582 chr3L 1841661 1841692 13 109 13.5 20.0 16.8 0.7 141 chr3L 1841551 intron Cpr62Bc - chr3L 1841622 intron Cpr62Bc - chr3L 1841692 intron Cpr62Bc - chr3L_13_1840001 chr3L_1840001 RAL-303_100b 2562 chr3L 1922438 1922465 chr3L 1922536 1922568 25 98 41.0 35.0 38.0 0.6 130 chr3L 1922438 intron Dbx + chr3L 1922503 intron Dbx + chr3L 1922568 intron Dbx + chr3L_25_1920001 chr3L_1920001 RAL-303_100b 2563 chr3L 1924937 1924974 chr3L 1925100 1925137 37 162 22.0 18.0 20.0 1.8 200 chr3L 1924937 exon Dbx + chr3L 1925037 intron Dbx + chr3L 1925137 intron Dbx + chr3L_37_1925001 chr3L_1925001 RAL-303_100b 2564 chr3L 2015755 2015756 chr3L 2015858 2015859 4 103 28.0 0.0 14.0 0.3 104 chr3L 2015755 intergenic not near genes chr3L 2015807 intergenic not near genes chr3L 2015859 intergenic not near genes chr3L_4_2015001 chr3L_2015001 RAL-303_100b 2565 chr3L 2035296 2035306 chr3L 2035398 2035408 9 101 0.0 13.0 6.5 1.2 112 chr3L 2035296 intergenic not near genes chr3L 2035352 intergenic not near genes chr3L 2035408 intergenic not near genes chr3L_9_2035001 chr3L_2035001 RAL-303_100b 2566 chr3L 2108224 2108278 chr3L 2113453 2113507 copia 21 5228 0.0 14.5 7.2 2.6 5283 chr3L 2108224 intron sls - chr3L 2110866 intron sls - chr3L 2113507 intron sls - chr3L_21_2110001 chr3L_2110001 RAL-303_100b 2567 chr3L 2199784 2199821 chr3L 2199885 2199922 48 100 4.5 14.0 9.2 4.7 138 chr3L 2199784 intergenic not near genes chr3L 2199853 intergenic not near genes chr3L 2199922 intergenic not near genes chr3L_48_2195001 chr3L_2195001 RAL-303_100b 2568 chr3L 2307977 2308034 chr3L 2308108 2308163 51 127 14.5 15.5 15.0 3.2 186 chr3L 2307977 intergenic not near genes chr3L 2308070 intergenic not near genes chr3L 2308163 intergenic not near genes chr3L_51_2305001 chr3L_2305001 RAL-303_100b 2569 chr3L 2321132 2321192 chr3L 2321234 2321294 54 100 12.0 18.0 15.0 3.4 162 chr3L 2321132 intergenic not near genes chr3L 2321213 intergenic not near genes chr3L 2321294 intergenic not near genes chr3L_54_2320001 chr3L_2320001 RAL-303_100b 2570 chr3L 2332957 2332959 chr3L 2333248 2333254 4 294 52.0 14.5 33.2 0.1 297 chr3L 2332957 intron MsR1 + chr3L 2333106 intron MsR1 + chr3L 2333254 intron MsR1 + chr3L_4_2330001 chr3L_2330001 RAL-303_100b 2571 chr3L 2332961 2333010 chr3L 2333247 2333305 46 292 19.0 14.0 16.5 2.6 344 chr3L 2332961 intron MsR1 + chr3L 2333133 intron MsR1 + chr3L 2333305 intron MsR1 + chr3L_46_2330001 chr3L_2330001 RAL-303_100b 2572 chr3L 2358133 2358182 chr3L 2358260 2358310 11 125 61.5 61.5 61.5 0.2 177 chr3L 2358133 intergenic not near genes chr3L 2358222 intergenic not near genes chr3L 2358310 intergenic not near genes chr3L_11_2355001 chr3L_2355001 RAL-303_100b 2573 chr3L 2411310 2411344 chr3L 2411415 2411449 41 103 11.5 16.0 13.8 2.8 139 chr3L 2411310 intron CG45186 + chr3L 2411380 intron CG45186 + chr3L 2411449 intron CG45186 + chr3L_41_2410001 chr3L_2410001 RAL-303_100b 2574 chr3L 2447481 2447498 chr3L 2456662 2456662 roo 13 9179 36.5 22.0 29.2 0.4 9181 chr3L 2447481 intron CG45186 + chr3L 2452072 intron CG45186 + chr3L 2456662 intron CG45186 + chr3L_13_2450001 chr3L_2450001 RAL-303_100b 2575 chr3L 2447499 2447536 chr3L 2456660 2456700 roo 41 9174 12.0 20.0 16.0 2.4 9201 chr3L 2447499 intron CG45186 + chr3L 2452100 intron CG45186 + chr3L 2456700 intron CG45186 + chr3L_41_2450001 chr3L_2450001 RAL-303_100b 2576 chr3L 2467442 2467485 chr3L 2467547 2467607 17 119 9.5 2.5 6.0 2.4 165 chr3L 2467442 intron CG45186 + chr3L 2467524 intron CG45186 + chr3L 2467607 intron CG45186 + chr3L_17_2465001 chr3L_2465001 RAL-303_100b 2577 chr3L 2515420 2515430 chr3L 2515522 2515537 10 106 5.5 37.5 21.5 0.4 117 chr3L 2515420 intron Spn - chr3L 2515478 intron Spn - chr3L 2515537 intron Spn - chr3L_10_2515001 chr3L_2515001 RAL-303_100b 2578 chr3L 2534618 2534619 chr3L 2534709 2534727 4 102 0.0 16.5 8.2 0.4 109 chr3L 2534618 intron Spn - chr3L 2534672 intron Spn - chr3L 2534727 exon Spn - chr3L_4_2530001 chr3L_2530001 RAL-303_100b 2579 chr3L 2534620 2534640 chr3L 2534698 2534737 19 102 0.0 10.0 5.0 3.2 117 chr3L 2534620 intron Spn - chr3L 2534678 intron Spn - chr3L 2534737 exon Spn - chr3L_19_2530001 chr3L_2530001 RAL-303_100b 2580 chr3L 2579315 2579361 chr3L 2579431 2579477 41 114 11.0 17.0 14.0 2.7 162 chr3L 2579315 intron msn - chr3L 2579396 intron msn - chr3L 2579477 exon msn - chr3L_41_2575001 chr3L_2575001 RAL-303_100b 2581 chr3L 2581873 2581913 chr3L 2581992 2582026 21 118 13.0 17.0 15.0 1.3 153 chr3L 2581873 intron msn - chr3L 2581950 intron msn - chr3L 2582026 intron msn - chr3L_21_2580001 chr3L_2580001 RAL-303_100b 2582 chr3L 2617237 2617262 chr3L 2617348 2617373 27 110 9.5 15.0 12.2 2.0 136 chr3L 2617237 intron Pxn - chr3L 2617305 intron Pxn - chr3L 2617373 intron Pxn - chr3L_27_2615001 chr3L_2615001 RAL-303_100b 2583 chr3L 2626386 2626441 chr3L 2626535 2626558 42 147 13.5 11.0 12.2 3.2 172 chr3L 2626386 intron Pxn - chr3L 2626472 intron Pxn - chr3L 2626558 intron Pxn - chr3L_42_2625001 chr3L_2625001 RAL-303_100b 2584 chr3L 2680487 2680546 chr3L 2680592 2680633 34 103 13.0 0.5 6.8 4.4 146 chr3L 2680487 intron Fife - chr3L 2680560 intron Fife - chr3L 2680633 intron Fife - chr3L_34_2680001 chr3L_2680001 RAL-303_100b 2585 chr3L 2683919 2683976 chr3L 2684020 2684077 64 99 14.5 15.5 15.0 4.0 158 chr3L 2683919 intron Fife - chr3L 2683998 intron Fife - chr3L 2684077 intron Fife - chr3L_64_2680001 chr3L_2680001 RAL-303_100b 2586 chr3L 2719510 2719559 chr3L 2719637 2719686 39 126 16.5 13.0 14.8 2.5 176 chr3L 2719510 3` UTR Mrtf - chr3L 2719598 3` UTR Mrtf - chr3L 2719686 3` UTR Mrtf - chr3L_39_2715001 chr3L_2715001 RAL-303_100b 2587 chr3L 2751433 2751474 chr3L 2755751 2755794 F-element 9 4318 15.0 23.5 19.2 0.4 4361 chr3L 2751433 intron Mrtf - chr3L 2753614 intron Mrtf - chr3L 2755794 intron Mrtf - chr3L_9_2750001 chr3L_2750001 RAL-303_100b 2588 chr3L 2835863 2835869 chr3L 2835963 2835974 5 104 32.5 23.5 28.0 0.2 111 chr3L 2835863 intron CG43444 - chr3L 2835918 intron CG43444 - chr3L 2835974 intron CG43444 - chr3L_5_2835001 chr3L_2835001 RAL-303_100b 2589 chr3L 2854453 2854504 chr3L 2854556 2854602 26 97 14.5 12.0 13.2 1.8 149 chr3L 2854453 intron CG43444 - chr3L 2854528 intron CG43444 - chr3L 2854602 intron CG43444 - chr3L_26_2850001 chr3L_2850001 RAL-303_100b 2590 chr3L 2896513 2896540 chr3L 2896614 2896627 22 100 18.5 14.5 16.5 1.3 114 chr3L 2896513 intron Shab + chr3L 2896570 intron Shab + chr3L 2896627 intron Shab + chr3L_22_2895001 chr3L_2895001 RAL-303_100b 2591 chr3L 2927814 2927838 chr3L 2936116 2936140 Tirant 27 8301 25.0 10.0 17.5 1.5 8326 chr3L 2927814 intron Shab + chr3L 2931977 intron Shab + chr3L 2936140 intron Shab + chr3L_27_2930001 chr3L_2930001 RAL-303_100b 2592 chr3L 2927840 2927872 chr3L 2936115 2936174 Tirant 28 8299 11.5 9.5 10.5 2.4 8334 chr3L 2927840 intron Shab + chr3L 2932007 intron Shab + chr3L 2936174 intron Shab + chr3L_28_2930001 chr3L_2930001 RAL-303_100b 2593 chr3L 2966165 2966218 chr3L 2966282 2966338 32 118 12.5 13.0 12.8 2.3 173 chr3L 2966165 intergenic not near genes chr3L 2966252 intergenic not near genes chr3L 2966338 intergenic not near genes chr3L_32_2965001 chr3L_2965001 RAL-303_100b 2594 chr3L 2983274 2983313 chr3L 2983377 2983379 31 103 22.5 0.0 11.2 2.5 105 chr3L 2983274 exon CG2107 + chr3L 2983326 3` UTR CG2107 + chr3L 2983379 3` UTR CG2107 + chr3L_31_2980001 chr3L_2980001 RAL-303_100b 2595 chr3L 3028992 3029020 chr3L 3029120 3029147 18 127 15.5 20.0 17.8 1.0 155 chr3L 3028992 intergenic not near genes chr3L 3029070 intergenic not near genes chr3L 3029147 intergenic not near genes chr3L_18_3025001 chr3L_3025001 RAL-303_100b 2596 chr3L 3030952 3030961 chr3L 3031057 3031066 17 105 10.5 4.5 7.5 2.0 114 chr3L 3030952 intergenic not near genes chr3L 3031009 intergenic not near genes chr3L 3031066 intergenic not near genes chr3L_17_3030001 chr3L_3030001 RAL-303_100b 2597 chr3L 3040307 3040325 chr3L 3042121 3042134 S-element 5 1813 22.5 0.0 11.2 0.4 1827 chr3L 3040307 3` UTR CG2162 + chr3L 3041220 intergenic not near genes chr3L 3042134 intergenic Jafrac2 + chr3L_5_3040001 chr3L_3040001 RAL-303_100b 2598 chr3L 3050873 3050928 chr3L 3050985 3051037 10 111 0.0 13.0 6.5 1.3 164 chr3L 3050873 intron CG32485 + chr3L 3050955 intron CG32485 + chr3L 3051037 exon CG32485 + chr3L_10_3050001 chr3L_3050001 RAL-303_100b 2599 chr3L 3051718 3051757 chr3L 3051985 3052024 pogo 34 266 23.0 14.5 18.8 1.7 306 chr3L 3051718 3` UTR CG32485 + chr3L 3051871 intergenic CG32485 + chr3L 3052024 intergenic CG32485 +,CG1271 + chr3L_34_3050001 chr3L_3050001 RAL-303_100b 2600 chr3L 3061257 3061315 chr3L 3069865 3069923 Tirant 33 8601 13.5 11.5 12.5 2.4 8666 chr3L 3061257 intron CG32486 - chr3L 3065590 intron CG32486 - chr3L 3069923 intron CG32486 - chr3L_33_3065001 chr3L_3065001 RAL-303_100b 2601 chr3L 3102790 3102849 chr3L 3102901 3102950 46 102 18.0 18.0 18.0 2.4 160 chr3L 3102790 intron Cht7 - chr3L 3102870 intron Cht7 - chr3L 3102950 intron Cht7 - chr3L_46_3100001 chr3L_3100001 RAL-303_100b 2602 chr3L 3107254 3107277 chr3L 3107365 3107388 19 108 15.5 26.0 20.8 0.9 134 chr3L 3107254 intergenic Cht7 - chr3L 3107321 intergenic Cht7 - chr3L 3107388 intergenic Cht7 - chr3L_19_3105001 chr3L_3105001 RAL-303_100b 2603 chr3L 3128165 3128216 chr3L 3128276 3128327 57 108 12.0 9.5 10.8 4.8 162 chr3L 3128165 intergenic prominin-like - chr3L 3128246 intergenic not near genes chr3L 3128327 intergenic not near genes chr3L_57_3125001 chr3L_3125001 RAL-303_100b 2604 chr3L 3259816 3259817 chr3L 3259941 3259942 4 125 9.0 27.0 18.0 0.2 126 chr3L 3259816 intron ckd + chr3L 3259879 intron ckd + chr3L 3259942 intron ckd + chr3L_4_3255001 chr3L_3255001 RAL-303_100b 2605 chr3L 3259820 3259826 chr3L 3259934 3259951 7 123 5.0 23.5 14.2 0.5 131 chr3L 3259820 intron ckd + chr3L 3259886 intron ckd + chr3L 3259951 intron ckd + chr3L_7_3255001 chr3L_3255001 RAL-303_100b 2606 chr3L 3259827 3259832 chr3L 3259925 3259954 7 121 4.5 20.0 12.2 0.5 127 chr3L 3259827 intron ckd + chr3L 3259890 intron ckd + chr3L 3259954 intron ckd + chr3L_7_3255001 chr3L_3255001 RAL-303_100b 2607 chr3L 3281411 3281469 chr3L 3281932 3281990 Doc 32 519 13.0 14.5 13.8 2.2 579 chr3L 3281411 intron CG12017 + chr3L 3281700 intron CG12017 + chr3L 3281990 intron CG12017 + chr3L_32_3280001 chr3L_3280001 RAL-303_100b 2608 chr3L 3314111 3314171 chr3L 3314270 3314276 120 154 42.0 38.5 40.2 2.9 165 chr3L 3314111 intergenic ZnT63C +,Drsl2 + chr3L 3314194 intergenic Drsl2 +,ZnT63C + chr3L 3314276 intergenic Drsl2 +,ZnT63C + chr3L_120_3310001 chr3L_3310001 RAL-303_100b 2609 chr3L 3312265 3312310 chr3L 3315521 3315583 59 3264 99.5 125.5 112.5 0.5 3318 chr3L 3312265 exon ZnT63C + chr3L 3313924 3` UTR ZnT63C + chr3L 3315583 intergenic Drsl4 +,Drsl3 + chr3L_59_3310001 chr3L_3310001 RAL-303_100b 2610 chr3L 3315953 3316009 chr3L 3316079 3316134 17 126 7.5 5.0 6.2 2.4 181 chr3L 3315953 intergenic Drsl4 + chr3L 3316044 intergenic Drsl4 + chr3L 3316134 intergenic Drsl4 + chr3L_17_3315001 chr3L_3315001 RAL-303_100b 2611 chr3L 3392970 3393030 chr3L 3393078 3393138 36 106 7.0 11.5 9.2 3.5 168 chr3L 3392970 intergenic not near genes chr3L 3393054 intergenic not near genes chr3L 3393138 intergenic not near genes chr3L_36_3390001 chr3L_3390001 RAL-303_100b 2612 chr3L 3475052 3475075 chr3L 3475521 3475544 jockey 28 467 26.5 16.5 21.5 1.2 492 chr3L 3475052 intron CG42324 + chr3L 3475298 intron CG42324 + chr3L 3475544 intron CG42324 + chr3L_28_3475001 chr3L_3475001 RAL-303_100b 2613 chr3L 3475076 3475103 chr3L 3475519 3475564 jockey 22 463 14.0 14.0 14.0 1.5 488 chr3L 3475076 intron CG42324 + chr3L 3475320 intron CG42324 + chr3L 3475564 intron CG42324 + chr3L_22_3475001 chr3L_3475001 RAL-303_100b 2614 chr3L 3494177 3494203 chr3L 3494278 3494305 17 102 1.5 20.0 10.8 1.4 128 chr3L 3494177 intron CG42324 + chr3L 3494241 intron CG42324 + chr3L 3494305 intron CG42324 + chr3L_17_3490001 chr3L_3490001 RAL-303_100b 2615 chr3L 3593870 3593899 chr3L 3593980 3594004 13 110 14.5 0.0 7.2 1.6 134 chr3L 3593870 intron,5` UTR Eip63E +,snRNA:U7 + chr3L 3593937 intron Eip63E + chr3L 3594004 intron Eip63E + chr3L_13_3590001 chr3L_3590001 RAL-303_100b 2616 chr3L 3598190 3598229 chr3L 3598293 3598327 27 105 22.5 13.5 18.0 1.4 137 chr3L 3598190 exon Eip63E + chr3L 3598258 intron Eip63E + chr3L 3598327 intron Eip63E + chr3L_27_3595001 chr3L_3595001 RAL-303_100b 2617 chr3L 3601274 3601296 chr3L 3606610 3606632 copia 23 5336 29.5 11.5 20.5 1.1 5358 chr3L 3601274 intron Eip63E + chr3L 3603953 intron Eip63E + chr3L 3606632 intron Eip63E + chr3L_23_3600001 chr3L_3600001 RAL-303_100b 2618 chr3L 3601298 3601331 chr3L 3606609 3606661 copia 21 5329 14.0 11.5 12.8 1.5 5363 chr3L 3601298 intron Eip63E + chr3L 3603980 intron Eip63E + chr3L 3606661 intron Eip63E + chr3L_21_3600001 chr3L_3600001 RAL-303_100b 2619 chr3L 3609757 3609815 chr3L 3609863 3609927 40 107 14.0 7.5 10.8 3.4 170 chr3L 3609757 3` UTR Eip63E + chr3L 3609842 3` UTR Eip63E + chr3L 3609927 3` UTR Eip63E + chr3L_40_3605001 chr3L_3605001 RAL-303_100b 2620 chr3L 3619380 3619434 chr3L 3619498 3619538 32 118 14.0 12.5 13.2 2.3 158 chr3L 3619380 intergenic not near genes chr3L 3619459 intergenic not near genes chr3L 3619538 intergenic not near genes chr3L_32_3615001 chr3L_3615001 RAL-303_100b 2621 chr3L 3627210 3627264 chr3L 3627340 3627390 55 129 7.5 13.0 10.2 4.9 180 chr3L 3627210 intron dar1 + chr3L 3627300 intron dar1 + chr3L 3627390 intron dar1 + chr3L_55_3625001 chr3L_3625001 RAL-303_100b 2622 chr3L 3763732 3763767 chr3L 3763837 3763838 29 102 15.0 0.0 7.5 3.4 106 chr3L 3763732 intron CG32264 - chr3L 3763785 intron CG32264 - chr3L 3763838 intron CG32264 - chr3L_29_3760001 chr3L_3760001 RAL-303_100b 2623 chr3L 3766712 3766745 chr3L 3766823 3766843 21 109 19.5 0.0 9.8 1.9 131 chr3L 3766712 intron CG32264 - chr3L 3766778 intron CG32264 - chr3L 3766843 intron CG32264 - chr3L_21_3765001 chr3L_3765001 RAL-303_100b 2624 chr3L 3773248 3773290 chr3L 3773365 3773389 38 114 14.5 25.0 19.8 1.8 141 chr3L 3773248 intron CG32264 - chr3L 3773318 intron CG32264 - chr3L 3773389 intron CG32264 - chr3L_38_3770001 chr3L_3770001 RAL-303_100b 2625 chr3L 3773602 3773668 chr3L 3773706 3773774 17 102 0.5 0.5 0.5 11.3 172 chr3L 3773602 intron CG32264 - chr3L 3773688 intron CG32264 - chr3L 3773774 intron CG32264 - chr3L_17_3770001 chr3L_3770001 RAL-303_100b 2626 chr3L 3783245 3783288 chr3L 3783347 3783390 17 99 13.5 16.0 14.8 1.1 145 chr3L 3783245 intron CG32264 - chr3L 3783318 intron CG32264 - chr3L 3783390 intron CG32264 - chr3L_17_3780001 chr3L_3780001 RAL-303_100b 2627 chr3L 3797220 3797250 chr3L 3797327 3797358 26 107 1.0 18.0 9.5 2.5 138 chr3L 3797220 intron CG32264 - chr3L 3797289 intron CG32264 - chr3L 3797358 intron CG32264 - chr3L_26_3795001 chr3L_3795001 RAL-303_100b 2628 chr3L 3797251 3797265 chr3L 3797323 3797370 10 103 1.0 17.0 9.0 1.0 119 chr3L 3797251 intron CG32264 - chr3L 3797310 intron CG32264 - chr3L 3797370 intron CG32264 - chr3L_10_3795001 chr3L_3795001 RAL-303_100b 2629 chr3L 3833712 3833770 chr3L 3833978 3834035 pogo 32 264 10.0 6.5 8.2 3.5 323 chr3L 3833712 intron enc + chr3L 3833874 intron enc + chr3L 3834035 intron enc + chr3L_32_3830001 chr3L_3830001 RAL-303_100b 2630 chr3L 3877440 3877468 chr3L 3877588 3877616 23 147 0.0 27.0 13.5 1.6 176 chr3L 3877440 intergenic not near genes chr3L 3877528 intergenic not near genes chr3L 3877616 intergenic not near genes chr3L_23_3875001 chr3L_3875001 RAL-303_100b 2631 chr3L 3881685 3881738 chr3L 3881795 3881823 35 104 16.5 2.5 9.5 3.3 138 chr3L 3881685 intergenic not near genes chr3L 3881754 intergenic not near genes chr3L 3881823 intergenic not near genes chr3L_35_3880001 chr3L_3880001 RAL-303_100b 2632 chr3L 3912479 3912516 chr3L 3912580 3912596 16 99 11.5 25.0 18.2 0.8 117 chr3L 3912479 intron Eip63F-1 - chr3L 3912538 intron Eip63F-1 - chr3L 3912596 intron Eip63F-1 - chr3L_16_3910001 chr3L_3910001 RAL-303_100b 2633 chr3L 4013874 4013930 chr3L 4014083 4014118 36 203 16.5 14.5 15.5 2.2 244 chr3L 4013874 intergenic not near genes chr3L 4013996 intergenic not near genes chr3L 4014118 intergenic not near genes chr3L_36_4010001 chr3L_4010001 RAL-303_100b 2634 chr3L 4015708 4015712 chr3L 4015816 4015820 5 108 37.0 8.0 22.5 0.2 112 chr3L 4015708 intergenic not near genes chr3L 4015764 intergenic not near genes chr3L 4015820 intergenic not near genes chr3L_5_4015001 chr3L_4015001 RAL-303_100b 2635 chr3L 4015714 4015765 chr3L 4015815 4015873 45 107 9.0 7.5 8.2 4.9 159 chr3L 4015714 intergenic not near genes chr3L 4015794 intergenic not near genes chr3L 4015873 intergenic not near genes chr3L_45_4015001 chr3L_4015001 RAL-303_100b 2636 chr3L 4082661 4082709 chr3L 4082755 4082813 58 98 13.5 12.0 12.8 4.2 152 chr3L 4082661 intron Gad1 - chr3L 4082737 intron Gad1 - chr3L 4082813 intron Gad1 - chr3L_58_4080001 chr3L_4080001 RAL-303_100b 2637 chr3L 4146801 4146804 chr3L 4146902 4146911 6 106 0.0 15.5 7.8 0.7 110 chr3L 4146801 intergenic not near genes chr3L 4146856 intergenic not near genes chr3L 4146911 intergenic not near genes chr3L_6_4145001 chr3L_4145001 RAL-303_100b 2638 chr3L 4146805 4146806 chr3L 4146897 4146913 4 103 0.0 13.0 6.5 0.5 108 chr3L 4146805 intergenic not near genes chr3L 4146859 intergenic not near genes chr3L 4146913 intergenic not near genes chr3L_4_4145001 chr3L_4145001 RAL-303_100b 2639 chr3L 4146807 4146841 chr3L 4146895 4146942 26 103 0.0 12.5 6.2 3.6 135 chr3L 4146807 intergenic not near genes chr3L 4146874 intergenic not near genes chr3L 4146942 intergenic not near genes chr3L_26_4145001 chr3L_4145001 RAL-303_100b 2640 chr3L 4214512 4214547 chr3L 4214679 4214714 13 164 23.5 25.5 24.5 0.5 202 chr3L 4214512 intron CG43367 + chr3L 4214613 intron CG43367 + chr3L 4214714 intron CG43367 + chr3L_13_4210001 chr3L_4210001 RAL-303_100b 2641 chr3L 4229730 4229767 chr3L 4229825 4229865 20 110 46.0 51.5 48.8 0.4 135 chr3L 4229730 intron ImpL2 - chr3L 4229798 intron ImpL2 - chr3L 4229865 intron ImpL2 - chr3L_20_4225001 chr3L_4225001 RAL-303_100b 2642 chr3L 4233069 4233098 chr3L 4233182 4233201 16 112 37.5 36.5 37.0 0.4 132 chr3L 4233069 intron ImpL2 - chr3L 4233135 intron ImpL2 - chr3L 4233201 intron ImpL2 - chr3L_16_4230001 chr3L_4230001 RAL-303_100b 2643 chr3L 4238732 4238745 chr3L 4238844 4238857 7 112 25.5 25.5 25.5 0.3 125 chr3L 4238732 intergenic not near genes chr3L 4238794 intergenic not near genes chr3L 4238857 intergenic not near genes chr3L_7_4235001 chr3L_4235001 RAL-303_100b 2644 chr3L 4328729 4328765 chr3L 4336250 4336287 412 18 7522 16.5 19.5 18.0 0.9 7558 chr3L 4328729 intron Cip4 - chr3L 4332508 intron Cip4 - chr3L 4336287 exon Cip4 - chr3L_18_4330001 chr3L_4330001 RAL-303_100b 2645 chr3L 4341330 4341338 chr3L 21448026 21448026 13 17106693 62.5 77.5 70.0 0.2 17106696 chr3L 4341330 intron Cip4 - chr3L 12894678 3` UTR CG14118 + chr3L 21448026 3` UTR Syx7 + chr3L_13_12890001 chr3L_12890001 RAL-303_100b 2646 chr3L 4364176 4364231 chr3L 4364290 4364345 11 114 9.0 5.0 7.0 1.4 169 chr3L 4364176 intergenic Cip4 -,mRpS6 + chr3L 4364260 intergenic Cip4 -,mRpS6 + chr3L 4364345 intergenic mRpS6 +,Cip4 - chr3L_11_4360001 chr3L_4360001 RAL-303_100b 2647 chr3L 4384871 4384922 chr3L 4384989 4385040 25 116 48.5 47.0 47.8 0.5 169 chr3L 4384871 5` UTR slow + chr3L 4384956 intron slow + chr3L 4385040 intron slow + chr3L_25_4380001 chr3L_4380001 RAL-303_100b 2648 chr3L 4390016 4390035 chr3L 4390113 4390147 5 100 30.0 38.5 34.2 0.1 131 chr3L 4390016 intron slow + chr3L 4390082 intron slow + chr3L 4390147 intron slow + chr3L_5_4390001 chr3L_4390001 RAL-303_100b 2649 chr3L 4397430 4397471 chr3L 4397575 4397626 18 152 48.5 48.5 48.5 0.4 196 chr3L 4397430 intron slow + chr3L 4397528 intron slow + chr3L 4397626 intron slow + chr3L_18_4395001 chr3L_4395001 RAL-303_100b 2650 chr3L 4416000 4416007 chr3L 4416107 4416114 5 107 57.5 48.0 52.8 0.1 114 chr3L 4416000 intron DOR + chr3L 4416057 intron DOR + chr3L 4416114 intron DOR + chr3L_5_4415001 chr3L_4415001 RAL-303_100b 2651 chr3L 4416011 4416056 chr3L 4416103 4416163 35 101 47.5 48.0 47.8 0.7 152 chr3L 4416011 intron DOR + chr3L 4416087 intron DOR + chr3L 4416163 intron DOR + chr3L_35_4415001 chr3L_4415001 RAL-303_100b 2652 chr3L 4440730 4440759 chr3L 4440833 4440864 4 105 23.5 19.0 21.2 0.2 134 chr3L 4440730 intergenic not near genes chr3L 4440797 intergenic not near genes chr3L 4440864 intergenic not near genes chr3L_4_4440001 chr3L_4440001 RAL-303_100b 2653 chr3L 4480706 4480718 chr3L 4481048 4481068 9 342 132.5 110.5 121.5 0.1 362 chr3L 4480706 exon CG7465 + chr3L 4480887 exon CG7465 + chr3L 4481068 exon CG7465 + chr3L_9_4480001 chr3L_4480001 RAL-303_100b 2654 chr3L 4494599 4494642 chr3L 4494752 4494784 21 152 39.0 26.5 32.8 0.6 185 chr3L 4494599 intron CR44709 - chr3L 4494692 3` UTR CR44709 - chr3L 4494784 3` UTR CR44709 - chr3L_21_4490001 chr3L_4490001 RAL-303_100b 2655 chr3L 4503888 4503911 chr3L 4503990 4503991 9 99 34.5 34.5 34.5 0.3 103 chr3L 4503888 intron NT1 - chr3L 4503940 intron NT1 - chr3L 4503991 intron NT1 - chr3L_9_4500001 chr3L_4500001 RAL-303_100b 2656 chr3L 4519419 4519440 chr3L 4519495 4519540 20 99 34.0 30.5 32.2 0.6 121 chr3L 4519419 intron Tie - chr3L 4519480 intron Tie - chr3L 4519540 intron Tie - chr3L_20_4515001 chr3L_4515001 RAL-303_100b 2657 chr3L 4543340 4543360 chr3L 4543791 4543809 16 450 47.5 47.0 47.2 0.3 469 chr3L 4543340 intron CG11357 + chr3L 4543574 intron CG11357 + chr3L 4543809 intron CG11357 + chr3L_16_4540001 chr3L_4540001 RAL-303_100b 2658 chr3L 4547083 4547132 chr3L 4547373 4547401 34 287 29.5 41.0 35.2 0.9 318 chr3L 4547083 intron CG11357 + chr3L 4547242 intron CG11357 + chr3L 4547401 intron CG11357 + chr3L_34_4545001 chr3L_4545001 RAL-303_100b 2659 chr3L 4576866 4576911 chr3L 4576981 4577026 9 114 15.0 17.5 16.2 0.5 160 chr3L 4576866 intron CG42540 + chr3L 4576946 intron CG42540 + chr3L 4577026 intron CG42540 + chr3L_9_4575001 chr3L_4575001 RAL-303_100b 2660 chr3L 4580289 4580332 chr3L 4580394 4580428 20 109 44.0 40.0 42.0 0.5 139 chr3L 4580289 intron CG42540 + chr3L 4580358 intron CG42540 + chr3L 4580428 intron CG42540 + chr3L_20_4580001 chr3L_4580001 RAL-303_100b 2661 chr3L 4599516 4599535 chr3L 4599657 4599697 11 159 8.5 42.5 25.5 0.4 181 chr3L 4599516 intron Src64B - chr3L 4599606 intron Src64B - chr3L 4599697 intron Src64B - chr3L_11_4595001 chr3L_4595001 RAL-303_100b 2662 chr3L 4607240 4607292 chr3L 4607356 4607408 20 116 41.0 42.5 41.8 0.5 168 chr3L 4607240 intron Src64B - chr3L 4607324 intron Src64B - chr3L 4607408 intron Src64B - chr3L_20_4605001 chr3L_4605001 RAL-303_100b 2663 chr3L 4629602 4629640 chr3L 4629791 4629835 11 192 22.0 38.5 30.2 0.4 233 chr3L 4629602 intergenic axo -,Rpd3 + chr3L 4629718 3` UTR axo - chr3L 4629835 exon axo - chr3L_11_4625001 chr3L_4625001 RAL-303_100b 2664 chr3L 4685533 4685575 chr3L 4685932 4685973 18 399 28.0 28.5 28.2 0.6 440 chr3L 4685533 intron axo - chr3L 4685753 intron axo - chr3L 4685973 intron axo - chr3L_18_4685001 chr3L_4685001 RAL-303_100b 2665 chr3L 4725303 4725356 chr3L 4725414 4725469 22 111 34.0 44.5 39.2 0.5 166 chr3L 4725303 intron RhoGEF64C + chr3L 4725386 intron RhoGEF64C + chr3L 4725469 intron RhoGEF64C + chr3L_22_4725001 chr3L_4725001 RAL-303_100b 2666 chr3L 4748656 4748711 chr3L 4748819 4748873 34 160 37.5 31.0 34.2 1.0 217 chr3L 4748656 intron RhoGEF64C + chr3L 4748764 intron RhoGEF64C + chr3L 4748873 intron RhoGEF64C + chr3L_34_4745001 chr3L_4745001 RAL-303_100b 2667 chr3L 4782085 4782127 chr3L 4782210 4782251 20 120 42.5 44.0 43.2 0.5 166 chr3L 4782085 intron RhoGEF64C + chr3L 4782168 intron RhoGEF64C + chr3L 4782251 intron RhoGEF64C + chr3L_20_4780001 chr3L_4780001 RAL-303_100b 2668 chr3L 4784935 4784939 chr3L 4785168 4785173 5 233 9.0 13.0 11.0 0.4 238 chr3L 4784935 intron RhoGEF64C + chr3L 4785054 intron RhoGEF64C + chr3L 4785173 intron RhoGEF64C + chr3L_5_4785001 chr3L_4785001 RAL-303_100b 2669 chr3L 4784943 4784988 chr3L 4785167 4785190 36 230 3.0 12.5 7.8 4.1 247 chr3L 4784943 intron RhoGEF64C + chr3L 4785066 intron RhoGEF64C + chr3L 4785190 intron RhoGEF64C + chr3L_36_4785001 chr3L_4785001 RAL-303_100b 2670 chr3L 4789458 4789477 chr3L 4789559 4789566 5 102 39.5 30.0 34.8 0.1 108 chr3L 4789458 exon RhoGEF64C + chr3L 4789512 exon RhoGEF64C + chr3L 4789566 exon RhoGEF64C + chr3L_5_4785001 chr3L_4785001 RAL-303_100b 2671 chr3L 4789482 4789503 chr3L 4789558 4789574 4 91 28.0 29.0 28.5 0.1 92 chr3L 4789482 exon RhoGEF64C + chr3L 4789528 exon RhoGEF64C + chr3L 4789574 exon RhoGEF64C + chr3L_4_4785001 chr3L_4785001 RAL-303_100b 2672 chr3L 4824824 4824831 chr3L 4824937 4824944 7 113 47.5 37.5 42.5 0.2 120 chr3L 4824824 intron Dhc64C - chr3L 4824884 intron Dhc64C - chr3L 4824944 intron Dhc64C - chr3L_7_4820001 chr3L_4820001 RAL-303_100b 2673 chr3L 4840365 4840383 chr3L 4840499 4840517 9 132 20.5 0.0 10.2 0.8 152 chr3L 4840365 intergenic CG13707 - chr3L 4840441 intergenic CG13707 - chr3L 4840517 intergenic CG13707 - chr3L_9_4840001 chr3L_4840001 RAL-303_100b 2674 chr3L 4858290 4858312 chr3L 4858400 4858427 15 114 53.0 51.5 52.2 0.3 137 chr3L 4858290 intergenic not near genes chr3L 4858358 intergenic not near genes chr3L 4858427 intergenic not near genes chr3L_15_4855001 chr3L_4855001 RAL-303_100b 2675 chr3L 4858313 4858333 chr3L 4858393 4858448 18 102 49.0 50.5 49.8 0.4 135 chr3L 4858313 intergenic not near genes chr3L 4858380 intergenic not near genes chr3L 4858448 intergenic not near genes chr3L_18_4855001 chr3L_4855001 RAL-303_100b 2676 chr3L 4901103 4901160 chr3L 4907318 4907375 diver 40 6214 15.0 20.5 17.8 2.1 6272 chr3L 4901103 intergenic CG13704 + chr3L 4904239 intergenic not near genes chr3L 4907375 intergenic not near genes chr3L_40_4900001 chr3L_4900001 RAL-303_100b 2677 chr3L 4927539 4927584 chr3L 4927765 4927820 34 227 45.5 42.0 43.8 0.8 281 chr3L 4927539 intergenic not near genes chr3L 4927680 intergenic not near genes chr3L 4927820 intergenic not near genes chr3L_34_4925001 chr3L_4925001 RAL-303_100b 2678 chr3L 4941022 4941084 chr3L 4941355 4941417 34 331 55.0 33.0 44.0 0.8 395 chr3L 4941022 intron Con - chr3L 4941220 intron Con - chr3L 4941417 intron Con - chr3L_34_4940001 chr3L_4940001 RAL-303_100b 2679 chr3L 4958394 4958412 chr3L 4958507 4958525 7 109 46.0 42.5 44.2 0.2 131 chr3L 4958394 intron Con - chr3L 4958460 intron Con - chr3L 4958525 intron Con - chr3L_7_4955001 chr3L_4955001 RAL-303_100b 2680 chr3L 4958414 4958442 chr3L 4958501 4958555 8 108 42.5 41.5 42.0 0.2 141 chr3L 4958414 intron Con - chr3L 4958484 intron Con - chr3L 4958555 intron Con - chr3L_8_4955001 chr3L_4955001 RAL-303_100b 2681 chr3L 4989175 4989192 chr3L 4989290 4989307 7 115 26.0 29.5 27.8 0.2 132 chr3L 4989175 intron Con - chr3L 4989241 intron Con - chr3L 4989307 intron Con - chr3L_7_4985001 chr3L_4985001 RAL-303_100b 2682 chr3L 4990726 4990775 chr3L 4990860 4990897 19 131 39.5 35.0 37.2 0.5 171 chr3L 4990726 intron Con - chr3L 4990812 intron Con - chr3L 4990897 intron Con - chr3L_19_4990001 chr3L_4990001 RAL-303_100b 2683 chr3L 5034132 5034185 chr3L 5043309 5043362 roo 48 9175 15.0 9.5 12.2 3.6 9230 chr3L 5034132 intron Con - chr3L 5038747 intron Con - chr3L 5043362 intron Con - chr3L_48_5035001 chr3L_5035001 RAL-303_100b 2684 chr3L 5045432 5045480 chr3L 5050238 5050279 Doc 36 4804 16.0 15.0 15.5 2.2 4847 chr3L 5045432 intron Con - chr3L 5047856 intron Con - chr3L 5050279 intron Con - chr3L_36_5045001 chr3L_5045001 RAL-303_100b 2685 chr3L 5054930 5054961 chr3L 5055035 5055066 11 105 49.0 49.0 49.0 0.2 136 chr3L 5054930 intron Con - chr3L 5054998 intron Con - chr3L 5055066 intron Con - chr3L_11_5050001 chr3L_5050001 RAL-303_100b 2686 chr3L 5054965 5054973 chr3L 5055027 5055058 5 83 43.0 48.5 45.8 0.1 93 chr3L 5054965 intron Con - chr3L 5055012 intron Con - chr3L 5055058 intron Con - chr3L_5_5055001 chr3L_5055001 RAL-303_100b 2687 chr3L 5066290 5066322 chr3L 5066399 5066446 8 122 23.0 24.5 23.8 0.3 156 chr3L 5066290 intron Con - chr3L 5066368 intron Con - chr3L 5066446 intron Con - chr3L_8_5065001 chr3L_5065001 RAL-303_100b 2688 chr3L 5066946 5066965 chr3L 5067056 5067077 15 112 25.5 34.5 30.0 0.5 131 chr3L 5066946 intron Con - chr3L 5067012 intron Con - chr3L 5067077 intron Con - chr3L_15_5065001 chr3L_5065001 RAL-303_100b 2689 chr3L 5066968 5066990 chr3L 5067050 5067090 14 106 31.5 33.0 32.2 0.4 122 chr3L 5066968 intron Con - chr3L 5067029 intron Con - chr3L 5067090 intron Con - chr3L_14_5065001 chr3L_5065001 RAL-303_100b 2690 chr3L 5068038 5068059 chr3L 5068111 5068162 5 91 20.0 18.0 19.0 0.2 124 chr3L 5068038 intron Con - chr3L 5068100 intron Con - chr3L 5068162 intron Con - chr3L_5_5065001 chr3L_5065001 RAL-303_100b 2691 chr3L 5089123 5089148 chr3L 5089226 5089251 15 103 19.5 26.0 22.8 0.6 128 chr3L 5089123 intergenic not near genes chr3L 5089187 intergenic not near genes chr3L 5089251 intergenic not near genes chr3L_15_5085001 chr3L_5085001 RAL-303_100b 2692 chr3L 5101193 5101230 chr3L 5101282 5101315 12 101 33.5 39.5 36.5 0.3 122 chr3L 5101193 intergenic not near genes chr3L 5101254 intergenic not near genes chr3L 5101315 intergenic not near genes chr3L_12_5100001 chr3L_5100001 RAL-303_100b 2693 chr3L 5103588 5103604 chr3L 5103693 5103709 6 105 45.0 25.5 35.2 0.2 121 chr3L 5103588 intergenic not near genes chr3L 5103648 intergenic not near genes chr3L 5103709 intergenic not near genes chr3L_6_5100001 chr3L_5100001 RAL-303_100b 2694 chr3L 5104464 5104512 chr3L 5124620 5124671 43 20157 9.0 12.0 10.5 3.7 20207 chr3L 5104464 intergenic not near genes chr3L 5114568 intergenic not near genes chr3L 5124671 intergenic not near genes chr3L_43_5110001 chr3L_5110001 RAL-303_100b 2695 chr3L 5133474 5133514 chr3L 5133769 5133798 20 292 51.5 35.5 43.5 0.4 324 chr3L 5133474 intergenic CG15213 -,CG4603 + chr3L 5133636 intergenic CG4603 +,CG15213 - chr3L 5133798 intergenic CG4603 + chr3L_20_5130001 chr3L_5130001 RAL-303_100b 2696 chr3L 5164612 5164669 chr3L 5164712 5164770 49 98 15.0 15.0 15.0 3.1 158 chr3L 5164612 intron shep - chr3L 5164691 intron shep - chr3L 5164770 intron shep - chr3L_49_5160001 chr3L_5160001 RAL-303_100b 2697 chr3L 5172557 5172615 chr3L 5172669 5172722 28 111 34.0 38.5 36.2 0.8 165 chr3L 5172557 intron shep - chr3L 5172640 intron shep - chr3L 5172722 intron shep - chr3L_28_5170001 chr3L_5170001 RAL-303_100b 2698 chr3L 5212213 5212269 chr3L 5212320 5212377 33 105 44.5 44.5 44.5 0.7 164 chr3L 5212213 intron shep - chr3L 5212295 intron shep - chr3L 5212377 intron shep - chr3L_33_5210001 chr3L_5210001 RAL-303_100b 2699 chr3L 5224488 5224524 chr3L 5224775 5224833 10 304 38.0 26.0 32.0 0.3 345 chr3L 5224488 intron shep - chr3L 5224660 intron shep - chr3L 5224833 intron shep - chr3L_10_5220001 chr3L_5220001 RAL-303_100b 2700 chr3L 5251845 5251866 chr3L 5251949 5251970 19 103 4.0 22.0 13.0 1.4 125 chr3L 5251845 intron shep - chr3L 5251908 intron shep - chr3L 5251970 intron shep - chr3L_19_5250001 chr3L_5250001 RAL-303_100b 2701 chr3L 5251868 5251871 chr3L 5251947 5251975 4 98 3.0 21.5 12.2 0.3 107 chr3L 5251868 intron shep - chr3L 5251922 intron shep - chr3L 5251975 intron shep - chr3L_4_5250001 chr3L_5250001 RAL-303_100b 2702 chr3L 5261141 5261177 chr3L 5261245 5261281 24 102 25.5 13.5 19.5 1.2 140 chr3L 5261141 intron shep - chr3L 5261211 intron shep - chr3L 5261281 intron shep - chr3L_24_5260001 chr3L_5260001 RAL-303_100b 2703 chr3L 5271166 5271170 chr3L 5271269 5271273 5 103 0.0 3.5 1.8 1.8 107 chr3L 5271166 intron shep - chr3L 5271220 intron shep - chr3L 5271273 intron shep - chr3L_5_5270001 chr3L_5270001 RAL-303_100b 2704 chr3L 5271172 5271190 chr3L 5271268 5271293 11 98 0.0 3.5 1.8 3.9 121 chr3L 5271172 intron shep - chr3L 5271232 intron shep - chr3L 5271293 intron shep - chr3L_11_5270001 chr3L_5270001 RAL-303_100b 2705 chr3L 5271191 5271200 chr3L 5271244 5271295 6 90 0.0 0.5 0.2 5.0 104 chr3L 5271191 intron shep - chr3L 5271243 intron shep - chr3L 5271295 intron shep - chr3L_6_5270001 chr3L_5270001 RAL-303_100b 2706 chr3L 5299130 5299176 chr3L 5306591 5306637 Quasimodo 15 7454 7.5 6.0 6.8 1.9 7507 chr3L 5299130 intergenic not near genes chr3L 5302884 intergenic not near genes chr3L 5306637 intergenic not near genes chr3L_15_5300001 chr3L_5300001 RAL-303_100b 2707 chr3L 5306652 5306661 chr3L 5306762 5306776 4 114 19.0 31.5 25.2 0.2 124 chr3L 5306652 intergenic not near genes chr3L 5306714 intergenic not near genes chr3L 5306776 intergenic not near genes chr3L_4_5305001 chr3L_5305001 RAL-303_100b 2708 chr3L 5307709 5307751 chr3L 5307846 5307888 21 136 32.0 36.0 34.0 0.6 179 chr3L 5307709 intergenic not near genes chr3L 5307798 intergenic not near genes chr3L 5307888 intergenic not near genes chr3L_21_5305001 chr3L_5305001 RAL-303_100b 2709 chr3L 5327439 5327478 chr3L 5327549 5327588 30 109 37.5 44.0 40.8 0.7 149 chr3L 5327439 intergenic not near genes chr3L 5327514 intergenic not near genes chr3L 5327588 intergenic not near genes chr3L_30_5325001 chr3L_5325001 RAL-303_100b 2710 chr3L 5376014 5376040 chr3L 5376118 5376144 15 103 36.0 47.5 41.8 0.4 130 chr3L 5376014 intergenic not near genes chr3L 5376079 intergenic not near genes chr3L 5376144 intergenic not near genes chr3L_15_5375001 chr3L_5375001 RAL-303_100b 2711 chr3L 5388175 5388232 chr3L 5388524 5388581 32 346 21.0 39.5 30.2 1.0 406 chr3L 5388175 intergenic not near genes chr3L 5388378 intergenic not near genes chr3L 5388581 intergenic not near genes chr3L_32_5385001 chr3L_5385001 RAL-303_100b 2712 chr3L 5393448 5393462 chr3L 5393635 5393649 8 187 43.5 7.0 25.2 0.3 201 chr3L 5393448 intergenic not near genes chr3L 5393548 intergenic not near genes chr3L 5393649 intergenic not near genes chr3L_8_5390001 chr3L_5390001 RAL-303_100b 2713 chr3L 5399572 5399577 chr3L 5399684 5399689 4 112 30.0 29.0 29.5 0.1 117 chr3L 5399572 intergenic not near genes chr3L 5399630 intergenic not near genes chr3L 5399689 intergenic not near genes chr3L_4_5395001 chr3L_5395001 RAL-303_100b 2714 chr3L 5389068 5389097 chr3L 5447219 5447222 6 58141 47.5 53.5 50.5 0.1 58154 chr3L 5389068 intergenic not near genes chr3L 5418145 intergenic not near genes chr3L 5447222 intergenic not near genes chr3L_6_5415001 chr3L_5415001 RAL-303_100b 2715 chr3L 5449508 5449562 chr3L 5449612 5449666 32 103 7.0 13.5 10.2 2.9 158 chr3L 5449508 intergenic not near genes chr3L 5449587 intergenic not near genes chr3L 5449666 intergenic not near genes chr3L_32_5445001 chr3L_5445001 RAL-303_100b 2716 chr3L 5458054 5458091 chr3L 5466661 5466716 Max-element 8 8619 7.5 16.5 12.0 0.6 8662 chr3L 5458054 intergenic not near genes chr3L 5462385 intergenic not near genes chr3L 5466716 intergenic not near genes chr3L_8_5460001 chr3L_5460001 RAL-303_100b 2717 chr3L 5482931 5483096 chr3L 5483150 5483204 38 154 2.0 3.0 2.5 10.9 273 chr3L 5482931 exon CG4835 + chr3L 5483068 exon CG4835 + chr3L 5483204 exon CG4835 + chr3L_38_5480001 chr3L_5480001 RAL-303_100b 2718 chr3L 5493191 5493222 chr3L 5493342 5493393 17 170 44.0 38.0 41.0 0.4 202 chr3L 5493191 intergenic CR44520 - chr3L 5493292 intergenic CR44520 - chr3L 5493393 intergenic CR44520 - chr3L_17_5490001 chr3L_5490001 RAL-303_100b 2719 chr3L 5498376 5498432 chr3L 5498475 5498519 26 100 4.5 9.0 6.8 3.3 143 chr3L 5498376 exon blanks - chr3L 5498448 exon blanks - chr3L 5498519 exon blanks - chr3L_26_5495001 chr3L_5495001 RAL-303_100b 2720 chr3L 5514718 5514766 chr3L 5514820 5514868 20 102 38.0 33.5 35.8 0.5 150 chr3L 5514718 intron Lkr - chr3L 5514793 intron Lkr - chr3L 5514868 intron Lkr - chr3L_20_5510001 chr3L_5510001 RAL-303_100b 2721 chr3L 5521470 5521526 chr3L 5521581 5521640 28 113 47.5 48.0 47.8 0.6 170 chr3L 5521470 intron Lkr - chr3L 5521555 intron Lkr - chr3L 5521640 intron Lkr - chr3L_28_5520001 chr3L_5520001 RAL-303_100b 2722 chr3L 5537696 5537706 chr3L 5538063 5538073 jockey 4 365 31.0 24.0 27.5 0.1 377 chr3L 5537696 intergenic not near genes chr3L 5537884 intergenic not near genes chr3L 5538073 intergenic CG10625 - chr3L_4_5535001 chr3L_5535001 RAL-303_100b 2723 chr3L 5537707 5537751 chr3L 5538062 5538118 jockey 50 363 14.5 23.5 19.0 2.5 411 chr3L 5537707 intergenic not near genes chr3L 5537912 intergenic CG10625 - chr3L 5538118 intergenic CG10625 - chr3L_50_5535001 chr3L_5535001 RAL-303_100b 2724 chr3L 5561638 5561697 chr3L 5561745 5561804 13 102 10.0 16.5 13.2 0.9 166 chr3L 5561638 intergenic sinu -,Sucb - chr3L 5561721 3` UTR Sucb - chr3L 5561804 3` UTR Sucb - chr3L_13_5560001 chr3L_5560001 RAL-303_100b 2725 chr3L 5613470 5613501 chr3L 5613622 5613653 16 149 26.5 25.5 26.0 0.6 183 chr3L 5613470 intergenic not near genes chr3L 5613562 intergenic not near genes chr3L 5613653 intergenic not near genes chr3L_16_5610001 chr3L_5610001 RAL-303_100b 2726 chr3L 5622457 5622466 chr3L 5622562 5622571 4 105 33.5 40.0 36.8 0.1 114 chr3L 5622457 intergenic not near genes chr3L 5622514 intergenic not near genes chr3L 5622571 intergenic not near genes chr3L_4_5620001 chr3L_5620001 RAL-303_100b 2727 chr3L 5667602 5667639 chr3L 5667707 5667729 14 102 54.5 41.5 48.0 0.3 127 chr3L 5667602 intron sif + chr3L 5667666 intron sif + chr3L 5667729 intron sif + chr3L_14_5665001 chr3L_5665001 RAL-303_100b 2728 chr3L 5677164 5677206 chr3L 5677265 5677307 10 97 47.0 57.5 52.2 0.2 143 chr3L 5677164 intron sif + chr3L 5677236 intron sif + chr3L 5677307 intron sif + chr3L_10_5675001 chr3L_5675001 RAL-303_100b 2729 chr3L 5701557 5701582 chr3L 5701653 5701688 12 104 52.5 46.0 49.2 0.2 131 chr3L 5701557 intron sif + chr3L 5701622 intron sif + chr3L 5701688 intron sif + chr3L_12_5700001 chr3L_5700001 RAL-303_100b 2730 chr3L 5701583 5701600 chr3L 5701652 5701676 15 95 44.5 45.5 45.0 0.3 93 chr3L 5701583 intron sif + chr3L 5701630 intron sif + chr3L 5701676 intron sif + chr3L_15_5700001 chr3L_5700001 RAL-303_100b 2731 chr3L 5727155 5727163 chr3L 5727651 5727661 8 498 47.5 33.0 40.2 0.2 506 chr3L 5727155 intron sif + chr3L 5727408 intron sif + chr3L 5727661 intron sif + chr3L_8_5725001 chr3L_5725001 RAL-303_100b 2732 chr3L 5727166 5727199 chr3L 5727649 5727697 11 495 36.5 32.0 34.2 0.3 531 chr3L 5727166 intron sif + chr3L 5727432 intron sif + chr3L 5727697 intron sif + chr3L_11_5725001 chr3L_5725001 RAL-303_100b 2733 chr3L 5836950 5837001 chr3L 5837064 5837099 27 104 26.0 25.0 25.5 1.0 149 chr3L 5836950 intron vn - chr3L 5837024 intron vn - chr3L 5837099 intron vn - chr3L_27_5835001 chr3L_5835001 RAL-303_100b 2734 chr3L 5890736 5890779 chr3L 5891020 5891059 22 284 40.0 36.0 38.0 0.6 323 chr3L 5890736 intergenic not near genes chr3L 5890898 intergenic not near genes chr3L 5891059 intergenic not near genes chr3L_22_5890001 chr3L_5890001 RAL-303_100b 2735 chr3L 5908052 5908104 chr3L 5908157 5908209 36 104 4.0 5.0 4.5 6.5 157 chr3L 5908052 intron CG13288 + chr3L 5908130 intron CG13288 + chr3L 5908209 intron CG13288 + chr3L_36_5905001 chr3L_5905001 RAL-303_100b 2736 chr3L 5910006 5910063 chr3L 5910272 5910329 pogo 60 265 18.5 20.0 19.2 3.0 323 chr3L 5910006 intron CG13288 + chr3L 5910168 intron CG13288 + chr3L 5910329 intron CG13288 + chr3L_60_5910001 chr3L_5910001 RAL-303_100b 2737 chr3L 5926293 5926310 chr3L 5926508 5926515 14 210 35.0 22.5 28.8 0.5 222 chr3L 5926293 intron Vap-33B + chr3L 5926404 intron Vap-33B + chr3L 5926515 intron Vap-33B + chr3L_14_5925001 chr3L_5925001 RAL-303_100b 2738 chr3L 5926313 5926348 chr3L 5926502 5926533 BS 37 206 16.0 17.0 16.5 2.1 220 chr3L 5926313 intron Vap-33B + chr3L 5926423 intron Vap-33B + chr3L 5926533 intron Vap-33B + chr3L_37_5925001 chr3L_5925001 RAL-303_100b 2739 chr3L 5949385 5949444 chr3L 5949501 5949530 17 111 44.5 59.5 52.0 0.3 145 chr3L 5949385 intron CG33993 - chr3L 5949458 intron CG33993 - chr3L 5949530 intron CG33993 - chr3L_17_5945001 chr3L_5945001 RAL-303_100b 2740 chr3L 5983806 5983866 chr3L 5983952 5984010 46 143 12.0 0.0 6.0 6.6 204 chr3L 5983806 3` UTR CR45439 - chr3L 5983908 intergenic CR45439 -,CR45440 - chr3L 5984010 intergenic CR45440 -,CR45439 - chr3L_46_5980001 chr3L_5980001 RAL-303_100b 2741 chr3L 5987026 5987049 chr3L 5987132 5987155 7 103 27.5 25.0 26.2 0.3 129 chr3L 5987026 intergenic not near genes chr3L 5987090 intergenic not near genes chr3L 5987155 intergenic not near genes chr3L_7_5985001 chr3L_5985001 RAL-303_100b 2742 chr3L 5992583 5992607 chr3L 5992700 5992733 16 123 65.5 51.0 58.2 0.3 150 chr3L 5992583 intergenic not near genes chr3L 5992658 intergenic not near genes chr3L 5992733 intergenic not near genes chr3L_16_5990001 chr3L_5990001 RAL-303_100b 2743 chr3L 5992608 5992620 chr3L 5992695 5992741 6 119 55.5 49.5 52.5 0.1 133 chr3L 5992608 intergenic not near genes chr3L 5992674 intergenic not near genes chr3L 5992741 intergenic not near genes chr3L_6_5990001 chr3L_5990001 RAL-303_100b 2744 chr3L 6001659 6001662 chr3L 6004384 6004387 jockey 4 2725 29.5 6.0 17.8 0.2 2728 chr3L 6001659 intron PVRAP + chr3L 6003023 intron PVRAP + chr3L 6004387 intron PVRAP + chr3L_4_6000001 chr3L_6000001 RAL-303_100b 2745 chr3L 6001664 6001716 chr3L 6004380 6004441 jockey 30 2724 12.0 6.0 9.0 3.0 2777 chr3L 6001664 intron PVRAP + chr3L 6003052 intron PVRAP + chr3L 6004441 intron PVRAP + chr3L_30_6000001 chr3L_6000001 RAL-303_100b 2746 chr3L 6040341 6040384 chr3L 6042722 6042765 Doc 20 2381 16.5 32.0 24.2 0.8 2424 chr3L 6040341 intergenic Jon65Aiv + chr3L 6041553 intergenic not near genes chr3L 6042765 intergenic not near genes chr3L_20_6040001 chr3L_6040001 RAL-303_100b 2747 chr3L 6052112 6052152 chr3L 6052222 6052263 12 110 34.5 46.0 40.2 0.3 151 chr3L 6052112 intergenic Jon65Aii +,Jon65Aiii + chr3L 6052188 intergenic Jon65Aii +,Jon65Aiii + chr3L 6052263 intergenic Jon65Aii + chr3L_12_6050001 chr3L_6050001 RAL-303_100b 2748 chr3L 6052644 6052656 chr3L 6052739 6052766 12 103 39.0 39.5 39.2 0.3 122 chr3L 6052644 exon Jon65Aii + chr3L 6052705 intron Jon65Aii + chr3L 6052766 exon Jon65Aii + chr3L_12_6050001 chr3L_6050001 RAL-303_100b 2749 chr3L 6052657 6052673 chr3L 6052733 6052753 10 100 32.0 35.5 33.8 0.3 96 chr3L 6052657 exon Jon65Aii + chr3L 6052705 intron Jon65Aii + chr3L 6052753 exon Jon65Aii + chr3L_10_6050001 chr3L_6050001 RAL-303_100b 2750 chr3L 6077758 6077809 chr3L 6077863 6077914 20 104 37.0 30.0 33.5 0.6 156 chr3L 6077758 intron ssp6 + chr3L 6077836 intron ssp6 + chr3L 6077914 intron ssp6 + chr3L_20_6075001 chr3L_6075001 RAL-303_100b 2751 chr3L 6116670 6116724 chr3L 6116779 6116833 31 108 14.5 9.5 12.0 2.4 163 chr3L 6116670 intron Ets65A + chr3L 6116752 intron Ets65A + chr3L 6116833 intron Ets65A + chr3L_31_6115001 chr3L_6115001 RAL-303_100b 2752 chr3L 6119117 6119117 chr3L 6119219 6119219 4 102 35.0 13.0 24.0 0.2 102 chr3L 6119117 exon Ets65A + chr3L 6119168 intron Ets65A + chr3L 6119219 intron Ets65A + chr3L_4_6115001 chr3L_6115001 RAL-303_100b 2753 chr3L 6119122 6119173 chr3L 6119218 6119273 6 101 15.5 13.5 14.5 0.4 151 chr3L 6119122 exon Ets65A + chr3L 6119198 intron Ets65A + chr3L 6119273 intron Ets65A + chr3L_6_6115001 chr3L_6115001 RAL-303_100b 2754 chr3L 6155670 6155712 chr3L 6155781 6155812 30 109 19.5 4.0 11.8 2.3 142 chr3L 6155670 intergenic CR45421 - chr3L 6155741 intergenic not near genes chr3L 6155812 intergenic not near genes chr3L_30_6155001 chr3L_6155001 RAL-303_100b 2755 chr3L 6159924 6159974 chr3L 6160029 6160088 5 107 19.5 16.0 17.8 0.3 164 chr3L 6159924 intergenic not near genes chr3L 6160006 intergenic not near genes chr3L 6160088 intergenic not near genes chr3L_5_6160001 chr3L_6160001 RAL-303_100b 2756 chr3L 6162338 6162351 chr3L 6162444 6162457 4 104 30.0 36.0 33.0 0.1 119 chr3L 6162338 intergenic CR45744 - chr3L 6162398 intergenic CR45744 - chr3L 6162457 intergenic CR45744 - chr3L_4_6160001 chr3L_6160001 RAL-303_100b 2757 chr3L 6162356 6162385 chr3L 6162439 6162491 13 98 26.5 33.0 29.8 0.4 135 chr3L 6162356 intergenic CR45744 - chr3L 6162424 intergenic CR45744 - chr3L 6162491 intergenic CR45744 - chr3L_13_6160001 chr3L_6160001 RAL-303_100b 2758 chr3L 6165075 6165101 chr3L 6165204 6165219 8 126 51.0 65.5 58.2 0.1 144 chr3L 6165075 3` UTR CG10289 - chr3L 6165147 3` UTR CG10289 - chr3L 6165219 3` UTR CG10289 - chr3L_8_6165001 chr3L_6165001 RAL-303_100b 2759 chr3L 6169103 6169135 chr3L 6169209 6169241 19 105 28.5 29.5 29.0 0.6 138 chr3L 6169103 3` UTR CG10289 - chr3L 6169172 3` UTR CG10289 - chr3L 6169241 3` UTR CG10289 - chr3L_19_6165001 chr3L_6165001 RAL-303_100b 2760 chr3L 6220888 6220947 chr3L 6230065 6230113 roo 70 9176 23.0 17.5 20.2 3.3 9225 chr3L 6220888 5` UTR pncr008:3L + chr3L 6225500 intergenic not near genes chr3L 6230113 intergenic not near genes chr3L_70_6225001 chr3L_6225001 RAL-303_100b 2761 chr3L 6267290 6267342 chr3L 6267403 6267455 20 112 47.0 45.5 46.2 0.4 165 chr3L 6267290 intergenic not near genes chr3L 6267372 intergenic not near genes chr3L 6267455 intergenic not near genes chr3L_20_6265001 chr3L_6265001 RAL-303_100b 2762 chr3L 6295490 6295538 chr3L 6295678 6295726 16 186 48.0 34.0 41.0 0.4 236 chr3L 6295490 intergenic not near genes chr3L 6295608 intergenic not near genes chr3L 6295726 intergenic not near genes chr3L_16_6295001 chr3L_6295001 RAL-303_100b 2763 chr3L 6334984 6335042 chr3L 6335480 6335538 297 51 493 9.5 17.0 13.2 3.6 554 chr3L 6334984 intron CG13300 - chr3L 6335261 intron CG13300 - chr3L 6335538 intron CG13300 - chr3L_51_6335001 chr3L_6335001 RAL-303_100b 2764 chr3L 6369741 6369767 chr3L 6369870 6369880 5 126 15.0 1.0 8.0 0.6 139 chr3L 6369741 intergenic CR45419 - chr3L 6369810 intergenic CR45419 - chr3L 6369880 intergenic CR45419 - chr3L_5_6365001 chr3L_6365001 RAL-303_100b 2765 chr3L 6371417 6371454 chr3L 6371521 6371534 11 97 3.5 2.5 3.0 2.8 117 chr3L 6371417 intergenic not near genes chr3L 6371476 intergenic not near genes chr3L 6371534 intergenic not near genes chr3L_11_6370001 chr3L_6370001 RAL-303_100b 2766 chr3L 6401267 6401308 chr3L 6401354 6401404 22 101 51.5 50.5 51.0 0.4 137 chr3L 6401267 intron CG42747 + chr3L 6401336 intron CG42747 + chr3L 6401404 intron CG42747 + chr3L_22_6400001 chr3L_6400001 RAL-303_100b 2767 chr3L 6405640 6405664 chr3L 6432129 6432152 roo 21 26489 22.0 20.0 21.0 1.0 26512 chr3L 6405640 intron CG42747 + chr3L 6418896 intron CG42747 + chr3L 6432152 intron CG42747 + chr3L_21_6415001 chr3L_6415001 RAL-303_100b 2768 chr3L 6405668 6405685 chr3L 6432121 6432174 roo 16 26486 17.5 17.0 17.2 0.9 26506 chr3L 6405668 intron CG42747 + chr3L 6418921 intron CG42747 + chr3L 6432174 intron CG42747 + chr3L_16_6415001 chr3L_6415001 RAL-303_100b 2769 chr3L 6442154 6442169 chr3L 6442343 6442395 26 192 101.0 116.5 108.8 0.2 241 chr3L 6442154 intron CG42747 + chr3L 6442274 intron CG42747 + chr3L 6442395 intron CG42747 + chr3L_26_6440001 chr3L_6440001 RAL-303_100b 2770 chr3L 6443140 6443154 chr3L 6443375 6443384 5 234 42.0 18.5 30.2 0.2 244 chr3L 6443140 intron CG42747 + chr3L 6443262 intron CG42747 + chr3L 6443384 intron CG42747 + chr3L_5_6440001 chr3L_6440001 RAL-303_100b 2771 chr3L 6592645 6592700 chr3L 6593027 6593081 47 379 45.5 45.0 45.2 1.0 436 chr3L 6592645 3` UTR CG18769 + chr3L 6592863 3` UTR CG18769 + chr3L 6593081 3` UTR CG18769 + chr3L_47_6590001 chr3L_6590001 RAL-303_100b 2772 chr3L 6604288 6604300 chr3L 6604390 6604402 5 102 5.0 16.5 10.8 0.4 114 chr3L 6604288 intron CG8368 + chr3L 6604345 intron CG8368 + chr3L 6604402 intron,3` UTR CG8368 +,zpg - chr3L_5_6600001 chr3L_6600001 RAL-303_100b 2773 chr3L 6620504 6620608 chr3L 6621053 6621057 Rt1c 33 521 7.5 32.5 20.0 1.6 553 chr3L 6620504 intergenic not near genes chr3L 6620780 intergenic not near genes chr3L 6621057 intergenic not near genes chr3L_33_6620001 chr3L_6620001 RAL-303_100b 2774 chr3L 6632390 6632443 chr3L 6632502 6632555 19 112 33.5 34.0 33.8 0.5 165 chr3L 6632390 intron GluRIA + chr3L 6632472 intron GluRIA + chr3L 6632555 intron GluRIA + chr3L_19_6630001 chr3L_6630001 RAL-303_100b 2775 chr3L 6722072 6722106 chr3L 6722174 6722208 16 102 31.5 31.5 31.5 0.5 136 chr3L 6722072 intergenic not near genes chr3L 6722140 intergenic not near genes chr3L 6722208 intergenic not near genes chr3L_16_6720001 chr3L_6720001 RAL-303_100b 2776 chr3L 6781099 6781154 chr3L 6783137 6783189 Doc 25 2035 12.5 0.0 6.2 3.5 2090 chr3L 6781099 intergenic not near genes chr3L 6782144 intergenic not near genes chr3L 6783189 intergenic not near genes chr3L_25_6780001 chr3L_6780001 RAL-303_100b 2777 chr3L 6810075 6810095 chr3L 6810172 6810185 9 98 49.0 51.0 50.0 0.2 110 chr3L 6810075 intergenic not near genes chr3L 6810130 intergenic not near genes chr3L 6810185 intergenic not near genes chr3L_9_6810001 chr3L_6810001 RAL-303_100b 2778 chr3L 6820621 6820628 chr3L 6820720 6820737 9 105 13.5 15.5 14.5 0.6 116 chr3L 6820621 intergenic not near genes chr3L 6820679 intergenic not near genes chr3L 6820737 intergenic not near genes chr3L_9_6820001 chr3L_6820001 RAL-303_100b 2779 chr3L 6820629 6820650 chr3L 6820717 6820750 7 93 10.5 12.5 11.5 0.6 121 chr3L 6820629 intergenic not near genes chr3L 6820690 intergenic not near genes chr3L 6820750 intergenic not near genes chr3L_7_6820001 chr3L_6820001 RAL-303_100b 2780 chr3L 6835909 6835922 chr3L 6836009 6836025 8 99 24.5 14.5 19.5 0.4 116 chr3L 6835909 intergenic not near genes chr3L 6835967 intergenic not near genes chr3L 6836025 intergenic not near genes chr3L_8_6835001 chr3L_6835001 RAL-303_100b 2781 chr3L 6847490 6847491 chr3L 6847595 6847596 4 105 2.0 14.0 8.0 0.4 106 chr3L 6847490 intergenic not near genes chr3L 6847543 intergenic not near genes chr3L 6847596 intergenic not near genes chr3L_4_6845001 chr3L_6845001 RAL-303_100b 2782 chr3L 6855910 6855954 chr3L 6860719 6860764 Doc 39 4808 12.0 26.0 19.0 1.9 4854 chr3L 6855910 intergenic not near genes chr3L 6858337 intergenic not near genes chr3L 6860764 intergenic not near genes chr3L_39_6855001 chr3L_6855001 RAL-303_100b 2783 chr3L 6865414 6865454 chr3L 6865533 6865575 4 120 5.0 0.0 2.5 1.1 161 chr3L 6865414 intergenic CR45115 - chr3L 6865494 3` UTR CR45115 - chr3L 6865575 3` UTR CR45115 - chr3L_4_6865001 chr3L_6865001 RAL-303_100b 2784 chr3L 6868693 6868743 chr3L 6868796 6868846 17 102 23.5 36.5 30.0 0.5 153 chr3L 6868693 intergenic not near genes chr3L 6868770 intergenic not near genes chr3L 6868846 intergenic not near genes chr3L_17_6865001 chr3L_6865001 RAL-303_100b 2785 chr3L 6875213 6875242 chr3L 6875315 6875344 14 102 29.5 11.0 20.2 0.7 131 chr3L 6875213 intergenic not near genes chr3L 6875278 intergenic not near genes chr3L 6875344 intergenic not near genes chr3L_14_6875001 chr3L_6875001 RAL-303_100b 2786 chr3L 6887492 6887524 chr3L 6895009 6895041 roo 36 7516 31.0 12.5 21.8 1.6 7549 chr3L 6887492 intergenic not near genes chr3L 6891266 intergenic not near genes chr3L 6895041 intergenic not near genes chr3L_36_6890001 chr3L_6890001 RAL-303_100b 2787 chr3L 6887526 6887544 chr3L 6895007 6895060 roo 19 7513 21.0 11.5 16.2 1.1 7534 chr3L 6887526 intergenic not near genes chr3L 6891293 intergenic not near genes chr3L 6895060 intergenic not near genes chr3L_19_6890001 chr3L_6890001 RAL-303_100b 2788 chr3L 6907988 6908041 chr3L 6908098 6908144 15 104 44.0 36.5 40.2 0.4 156 chr3L 6907988 intergenic not near genes chr3L 6908066 intergenic not near genes chr3L 6908144 intergenic not near genes chr3L_15_6905001 chr3L_6905001 RAL-303_100b 2789 chr3L 6934320 6934363 chr3L 6934456 6934499 10 134 20.0 8.5 14.2 0.7 179 chr3L 6934320 exon CG14820 + chr3L 6934410 intron CG14820 + chr3L 6934499 exon CG14820 + chr3L_10_6930001 chr3L_6930001 RAL-303_100b 2790 chr3L 6974485 6974510 chr3L 6974611 6974636 8 125 13.5 27.5 20.5 0.4 151 chr3L 6974485 intron Galphai - chr3L 6974560 intron Galphai - chr3L 6974636 intron Galphai - chr3L_8_6970001 chr3L_6970001 RAL-303_100b 2791 chr3L 6974511 6974524 chr3L 6974604 6974650 12 122 6.0 23.0 14.5 0.8 139 chr3L 6974511 intron Galphai - chr3L 6974580 intron Galphai - chr3L 6974650 intron Galphai - chr3L_12_6970001 chr3L_6970001 RAL-303_100b 2792 chr3L 6986339 6986394 chr3L 6986581 6986636 37 239 28.5 29.0 28.8 1.2 297 chr3L 6986339 intergenic not near genes chr3L 6986488 intergenic not near genes chr3L 6986636 intergenic not near genes chr3L_37_6985001 chr3L_6985001 RAL-303_100b 2793 chr3L 6994872 6994916 chr3L 6995506 6995552 BS 26 635 1.0 23.0 12.0 2.0 680 chr3L 6994872 intergenic bin + chr3L 6995212 intergenic not near genes chr3L 6995552 intergenic not near genes chr3L_26_6995001 chr3L_6995001 RAL-303_100b 2794 chr3L 6998144 6998199 chr3L 6998315 6998370 40 160 38.0 35.5 36.8 1.1 226 chr3L 6998144 intergenic not near genes chr3L 6998257 intergenic not near genes chr3L 6998370 intergenic Mp + chr3L_40_6995001 chr3L_6995001 RAL-303_100b 2795 chr3L 7001963 7001972 chr3L 7002109 7002118 7 146 20.5 13.5 17.0 0.4 155 chr3L 7001963 intron Mp + chr3L 7002040 intron Mp + chr3L 7002118 intron Mp + chr3L_7_7000001 chr3L_7000001 RAL-303_100b 2796 chr3L 7041902 7041925 chr3L 7042004 7042027 8 101 49.5 49.0 49.2 0.2 125 chr3L 7041902 intron Mp + chr3L 7041964 intron Mp + chr3L 7042027 intron Mp + chr3L_8_7040001 chr3L_7040001 RAL-303_100b 2797 chr3L 7086815 7086856 chr3L 7086919 7086961 4 104 43.5 35.0 39.2 0.1 146 chr3L 7086815 intergenic Cpr65Ea - chr3L 7086888 intergenic Cpr65Ea - chr3L 7086961 intergenic Cpr65Ea - chr3L_4_7085001 chr3L_7085001 RAL-303_100b 2798 chr3L 7091520 7091559 chr3L 7091606 7091660 9 90 30.5 24.0 27.2 0.3 140 chr3L 7091520 intergenic not near genes chr3L 7091590 intergenic not near genes chr3L 7091660 intergenic not near genes chr3L_9_7090001 chr3L_7090001 RAL-303_100b 2799 chr3L 7104723 7104736 chr3L 7104966 7104979 9 243 52.5 48.0 50.2 0.2 256 chr3L 7104723 intron form3 + chr3L 7104851 intron form3 + chr3L 7104979 intron form3 + chr3L_9_7100001 chr3L_7100001 RAL-303_100b 2800 chr3L 7104737 7104769 chr3L 7104964 7105012 21 240 48.0 47.5 47.8 0.4 275 chr3L 7104737 intron form3 + chr3L 7104874 intron form3 + chr3L 7105012 intron form3 + chr3L_21_7100001 chr3L_7100001 RAL-303_100b 2801 chr3L 7150867 7150902 chr3L 7150968 7151002 19 100 40.0 48.5 44.2 0.4 135 chr3L 7150867 intron corn - chr3L 7150934 intron corn - chr3L 7151002 intron corn - chr3L_19_7150001 chr3L_7150001 RAL-303_100b 2802 chr3L 7187390 7187420 chr3L 7187487 7187520 7 101 16.0 18.0 17.0 0.4 130 chr3L 7187390 intron Dscam2 - chr3L 7187455 intron Dscam2 - chr3L 7187520 intron Dscam2 - chr3L_7_7185001 chr3L_7185001 RAL-303_100b 2803 chr3L 7200220 7200277 chr3L 7200342 7200401 17 122 47.5 40.5 44.0 0.4 181 chr3L 7200220 intergenic not near genes chr3L 7200310 intergenic not near genes chr3L 7200401 intergenic not near genes chr3L_17_7200001 chr3L_7200001 RAL-303_100b 2804 chr3L 7201270 7201271 chr3L 21448026 21448027 4 14246756 56.0 77.5 66.8 0.1 14246757 chr3L 7201270 intergenic not near genes chr3L 14324648 intron,intron fz +,CR45025 - chr3L 21448027 3` UTR Syx7 + chr3L_4_14320001 chr3L_14320001 RAL-303_100b 2805 chr3L 7216103 7216143 chr3L 7216191 7216246 9 98 42.5 42.0 42.2 0.2 143 chr3L 7216103 intergenic not near genes chr3L 7216174 intergenic not near genes chr3L 7216246 intergenic not near genes chr3L_9_7215001 chr3L_7215001 RAL-303_100b 2806 chr3L 7222946 7223003 chr3L 7223055 7223114 33 107 48.5 50.0 49.2 0.7 168 chr3L 7222946 5` UTR CR45410 + chr3L 7223030 5` UTR CR45410 + chr3L 7223114 5` UTR CR45410 + chr3L_33_7220001 chr3L_7220001 RAL-303_100b 2807 chr3L 7227345 7227401 chr3L 7227506 7227562 37 159 32.0 36.0 34.0 1.1 217 chr3L 7227345 intergenic not near genes chr3L 7227454 intergenic not near genes chr3L 7227562 intergenic not near genes chr3L_37_7225001 chr3L_7225001 RAL-303_100b 2808 chr3L 7258918 7258932 chr3L 7259083 7259097 9 165 12.0 30.5 21.2 0.4 179 chr3L 7258918 intron CG14830 - chr3L 7259008 intron CG14830 - chr3L 7259097 intron CG14830 - chr3L_9_7255001 chr3L_7255001 RAL-303_100b 2809 chr3L 7264870 7264894 chr3L 7264978 7265002 10 108 21.0 20.5 20.8 0.5 132 chr3L 7264870 intergenic not near genes chr3L 7264936 intergenic not near genes chr3L 7265002 intergenic not near genes chr3L_10_7260001 chr3L_7260001 RAL-303_100b 2810 chr3L 7285424 7285476 chr3L 7285527 7285579 54 102 17.0 8.0 12.5 4.0 155 chr3L 7285424 intron unc-13-4A - chr3L 7285502 intron unc-13-4A - chr3L 7285579 intron unc-13-4A - chr3L_54_7285001 chr3L_7285001 RAL-303_100b 2811 chr3L 7308161 7308216 chr3L 7308262 7308317 19 101 37.5 40.0 38.8 0.5 156 chr3L 7308161 intron unc-13-4A - chr3L 7308239 intron unc-13-4A - chr3L 7308317 intron unc-13-4A - chr3L_19_7305001 chr3L_7305001 RAL-303_100b 2812 chr3L 7328918 7328975 chr3L 7329024 7329081 25 105 21.5 16.5 19.0 1.2 163 chr3L 7328918 intergenic CG8602 -,CG42307 +,mus312 + chr3L 7329000 intergenic CG42307 +,mus312 +,CG8602 - chr3L 7329081 intergenic CG42307 +,mus312 +,CG8602 - chr3L_25_7325001 chr3L_7325001 RAL-303_100b 2813 chr3L 7377292 7377347 chr3L 7380422 7380471 297 63 3129 10.0 17.5 13.8 4.3 3179 chr3L 7377292 intron SMSr - chr3L 7378882 intron SMSr - chr3L 7380471 intron SMSr - chr3L_63_7375001 chr3L_7375001 RAL-303_100b 2814 chr3L 7391921 7391971 chr3L 7392031 7392081 16 107 28.0 33.5 30.8 0.5 160 chr3L 7391921 intron CG8563 + chr3L 7392001 intron CG8563 + chr3L 7392081 intron CG8563 + chr3L_16_7390001 chr3L_7390001 RAL-303_100b 2815 chr3L 7422864 7422913 chr3L 7422975 7423024 4 111 38.5 29.5 34.0 0.1 160 chr3L 7422864 intergenic not near genes chr3L 7422944 intergenic not near genes chr3L 7423024 intergenic not near genes chr3L_4_7420001 chr3L_7420001 RAL-303_100b 2816 chr3L 7432813 7432823 chr3L 7432918 7432927 9 104 36.0 52.0 44.0 0.2 114 chr3L 7432813 intron CG42458 + chr3L 7432870 intron CG42458 + chr3L 7432927 intron CG42458 + chr3L_9_7430001 chr3L_7430001 RAL-303_100b 2817 chr3L 7436116 7436148 chr3L 7436212 7436236 14 98 14.5 16.5 15.5 0.8 120 chr3L 7436116 intron CG42458 + chr3L 7436176 intron CG42458 + chr3L 7436236 intron CG42458 + chr3L_14_7435001 chr3L_7435001 RAL-303_100b 2818 chr3L 7442924 7442964 chr3L 7443044 7443084 15 116 45.5 30.0 37.8 0.4 160 chr3L 7442924 intron CG42458 + chr3L 7443004 intron CG42458 + chr3L 7443084 intron CG42458 + chr3L_15_7440001 chr3L_7440001 RAL-303_100b 2819 chr3L 7444000 7444016 chr3L 7444119 7444139 15 122 32.5 9.5 21.0 0.7 139 chr3L 7444000 intron CG42458 + chr3L 7444070 intron CG42458 + chr3L 7444139 intron CG42458 + chr3L_15_7440001 chr3L_7440001 RAL-303_100b 2820 chr3L 7444018 7444047 chr3L 7444118 7444152 8 113 23.5 9.5 16.5 0.5 134 chr3L 7444018 intron CG42458 + chr3L 7444085 intron CG42458 + chr3L 7444152 intron CG42458 + chr3L_8_7440001 chr3L_7440001 RAL-303_100b 2821 chr3L 7449424 7449438 chr3L 7449529 7449543 10 104 47.5 51.0 49.2 0.2 119 chr3L 7449424 intron CG42458 + chr3L 7449484 intron CG42458 + chr3L 7449543 intron CG42458 + chr3L_10_7445001 chr3L_7445001 RAL-303_100b 2822 chr3L 7449439 7449450 chr3L 7449527 7449555 7 101 44.5 49.5 47.0 0.1 116 chr3L 7449439 intron CG42458 + chr3L 7449497 intron CG42458 + chr3L 7449555 intron CG42458 + chr3L_7_7445001 chr3L_7445001 RAL-303_100b 2823 chr3L 7450677 7450712 chr3L 7450785 7450817 10 108 13.0 16.0 14.5 0.6 140 chr3L 7450677 intron CG42458 + chr3L 7450747 intron CG42458 + chr3L 7450817 intron CG42458 + chr3L_10_7450001 chr3L_7450001 RAL-303_100b 2824 chr3L 7452525 7452530 chr3L 7452632 7452637 5 107 58.5 32.5 45.5 0.1 112 chr3L 7452525 intron CG42458 + chr3L 7452581 intron CG42458 + chr3L 7452637 intron CG42458 + chr3L_5_7450001 chr3L_7450001 RAL-303_100b 2825 chr3L 7452532 7452578 chr3L 7452629 7452680 19 100 36.5 30.0 33.2 0.6 148 chr3L 7452532 intron CG42458 + chr3L 7452606 intron CG42458 + chr3L 7452680 intron CG42458 + chr3L_19_7450001 chr3L_7450001 RAL-303_100b 2826 chr3L 7498706 7498792 chr3L 7503537 7503579 F-element 28 4811 4.0 8.5 6.2 3.9 4873 chr3L 7498706 5` UTR CG8539 - chr3L 7501142 intergenic not near genes chr3L 7503579 intergenic not near genes chr3L_28_7500001 chr3L_7500001 RAL-303_100b 2827 chr3L 7505410 7505431 chr3L 7505511 7505532 10 101 35.0 40.0 37.5 0.3 122 chr3L 7505410 intergenic CG7548 - chr3L 7505471 intergenic CG7548 - chr3L 7505532 intergenic CG7548 - chr3L_10_7505001 chr3L_7505001 RAL-303_100b 2828 chr3L 7574840 7574845 chr3L 7574942 7574947 4 102 35.5 44.5 40.0 0.1 107 chr3L 7574840 intergenic not near genes chr3L 7574894 intergenic not near genes chr3L 7574947 intergenic not near genes chr3L_4_7570001 chr3L_7570001 RAL-303_100b 2829 chr3L 7574847 7574860 chr3L 7574928 7574951 5 96 37.5 42.5 40.0 0.1 104 chr3L 7574847 intergenic not near genes chr3L 7574899 intergenic not near genes chr3L 7574951 intergenic not near genes chr3L_5_7570001 chr3L_7570001 RAL-303_100b 2830 chr3L 7576185 7576244 chr3L 7576298 7576322 29 110 51.5 51.0 51.2 0.6 137 chr3L 7576185 intergenic not near genes chr3L 7576254 intergenic not near genes chr3L 7576322 intergenic not near genes chr3L_29_7575001 chr3L_7575001 RAL-303_100b 2831 chr3L 7581603 7581647 chr3L 7581707 7581736 14 102 45.5 44.5 45.0 0.3 133 chr3L 7581603 intergenic not near genes chr3L 7581670 intergenic not near genes chr3L 7581736 intergenic not near genes chr3L_14_7580001 chr3L_7580001 RAL-303_100b 2832 chr3L 7591121 7591182 chr3L 7591237 7591278 61 108 14.0 12.0 13.0 4.4 157 chr3L 7591121 intergenic CG7716 - chr3L 7591200 intergenic CG7716 - chr3L 7591278 intergenic CG7716 - chr3L_61_7590001 chr3L_7590001 RAL-303_100b 2833 chr3L 7617674 7617681 chr3L 7617808 7617815 6 133 23.5 33.0 28.2 0.2 141 chr3L 7617674 intron CG33275 + chr3L 7617744 intron CG33275 + chr3L 7617815 intron CG33275 + chr3L_6_7615001 chr3L_7615001 RAL-303_100b 2834 chr3L 7640687 7640704 chr3L 7640836 7640853 10 148 51.0 52.0 51.5 0.2 166 chr3L 7640687 intergenic CG7506 -,CG33276 - chr3L 7640770 intergenic CG7506 -,CG33276 - chr3L 7640853 exon CG7506 - chr3L_10_7640001 chr3L_7640001 RAL-303_100b 2835 chr3L 7640705 7640745 chr3L 7640833 7640894 20 147 49.0 50.0 49.5 0.4 189 chr3L 7640705 intergenic CG7506 -,CG33276 - chr3L 7640800 3` UTR CG7506 - chr3L 7640894 exon CG7506 - chr3L_20_7640001 chr3L_7640001 RAL-303_100b 2836 chr3L 7727127 7727175 chr3L 7727233 7727244 17 103 30.5 30.5 30.5 0.5 117 chr3L 7727127 intron CG32373 + chr3L 7727186 intron CG32373 + chr3L 7727244 intron CG32373 + chr3L_17_7725001 chr3L_7725001 RAL-303_100b 2837 chr3L 7749471 7749471 chr3L 11777678 11777678 4 4028207 57.5 77.5 67.5 0.1 4028207 chr3L 7749471 intron,3` UTR CG32373 +,CG13685 + chr3L 9763574 5` UTR CG8177 + chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_4_9760001 chr3L_9760001 RAL-303_100b 2838 chr3L 7752135 7752179 chr3L 7752253 7752301 24 121 37.0 38.0 37.5 0.6 166 chr3L 7752135 intron CG32373 + chr3L 7752218 intron CG32373 + chr3L 7752301 intron CG32373 + chr3L_24_7750001 chr3L_7750001 RAL-303_100b 2839 chr3L 7767533 7767560 chr3L 7767679 7767692 14 150 59.0 52.5 55.8 0.2 159 chr3L 7767533 intron,exon Clk -,CG32371 - chr3L 7767612 intron,exon Clk -,CG32371 - chr3L 7767692 intron,exon Clk -,CG32371 - chr3L_14_7765001 chr3L_7765001 RAL-303_100b 2840 chr3L 7793691 7793699 chr3L 7800768 7800776 297 12 7077 49.0 19.5 34.2 0.3 7085 chr3L 7793691 intron CG32369 - chr3L 7797234 intron CG32369 - chr3L 7800776 intron CG32369 - chr3L_12_7795001 chr3L_7795001 RAL-303_100b 2841 chr3L 7793700 7793743 chr3L 7800767 7800813 297 52 7075 21.0 19.5 20.2 2.5 7113 chr3L 7793700 intron CG32369 - chr3L 7797256 intron CG32369 - chr3L 7800813 intron CG32369 - chr3L_52_7795001 chr3L_7795001 RAL-303_100b 2842 chr3L 7806121 7806181 chr3L 7806229 7806289 19 105 36.0 15.5 25.8 0.7 168 chr3L 7806121 intron CG32369 - chr3L 7806205 intron CG32369 - chr3L 7806289 intron CG32369 - chr3L_19_7805001 chr3L_7805001 RAL-303_100b 2843 chr3L 7829524 7829582 chr3L 7829632 7829674 30 105 25.5 32.5 29.0 1.0 150 chr3L 7829524 intron Pdp1 - chr3L 7829599 intron Pdp1 - chr3L 7829674 intron Pdp1 - chr3L_30_7825001 chr3L_7825001 RAL-303_100b 2844 chr3L 7845361 7845399 chr3L 7845469 7845506 12 108 40.0 29.5 34.8 0.3 145 chr3L 7845361 intron Pdp1 - chr3L 7845434 intron Pdp1 - chr3L 7845506 intron Pdp1 - chr3L_12_7845001 chr3L_7845001 RAL-303_100b 2845 chr3L 7867790 7867797 chr3L 7867893 7867900 4 102 27.0 21.0 24.0 0.2 110 chr3L 7867790 intergenic Pdp1 - chr3L 7867845 intergenic Pdp1 - chr3L 7867900 intergenic not near genes chr3L_4_7865001 chr3L_7865001 RAL-303_100b 2846 chr3L 7868577 7868583 chr3L 7868681 7868687 4 104 0.0 5.5 2.8 1.1 110 chr3L 7868577 intergenic CG32365 + chr3L 7868632 intergenic CG32365 + chr3L 7868687 intergenic CG32365 + chr3L_4_7865001 chr3L_7865001 RAL-303_100b 2847 chr3L 7869639 7869656 chr3L 7869744 7869761 11 104 33.0 22.0 27.5 0.4 122 chr3L 7869639 exon CG32365 + chr3L 7869700 exon CG32365 + chr3L 7869761 exon CG32365 + chr3L_11_7865001 chr3L_7865001 RAL-303_100b 2848 chr3L 7876083 7876124 chr3L 7876187 7876217 20 102 0.0 1.0 0.5 13.3 134 chr3L 7876083 intron CG32365 + chr3L 7876150 intron CG32365 + chr3L 7876217 intron CG32365 + chr3L_20_7875001 chr3L_7875001 RAL-303_100b 2849 chr3L 7884445 7884470 chr3L 7884549 7884550 9 101 8.5 19.5 14.0 0.6 105 chr3L 7884445 intron CG32365 + chr3L 7884498 intron CG32365 + chr3L 7884550 intron CG32365 + chr3L_9_7880001 chr3L_7880001 RAL-303_100b 2850 chr3L 7885122 7885132 chr3L 7885238 7885248 4 116 45.0 19.5 32.2 0.1 126 chr3L 7885122 intron CG32365 + chr3L 7885185 intron CG32365 + chr3L 7885248 intron CG32365 + chr3L_4_7885001 chr3L_7885001 RAL-303_100b 2851 chr3L 7886495 7886534 chr3L 7889044 7889077 Stalker4 19 2543 3.0 20.0 11.5 1.5 2582 chr3L 7886495 intron CG32365 + chr3L 7887786 intron CG32365 + chr3L 7889077 intron CG32365 + chr3L_19_7885001 chr3L_7885001 RAL-303_100b 2852 chr3L 7886535 7886546 chr3L 7889040 7889090 Stalker4 13 2539 3.0 16.5 9.8 1.2 2555 chr3L 7886535 intron CG32365 + chr3L 7887812 intron CG32365 + chr3L 7889090 intron CG32365 + chr3L_13_7885001 chr3L_7885001 RAL-303_100b 2853 chr3L 7916807 7916862 chr3L 7926003 7926023 roo 57 9194 16.5 15.0 15.8 3.4 9216 chr3L 7916807 3` UTR syd - chr3L 7921415 intron syd - chr3L 7926023 3` UTR syd - chr3L_57_7920001 chr3L_7920001 RAL-303_100b 2854 chr3L 7982967 7982988 chr3L 7983059 7983063 6 99 42.5 37.5 40.0 0.1 96 chr3L 7982967 intron nmo + chr3L 7983015 intron nmo + chr3L 7983063 intron nmo + chr3L_6_7980001 chr3L_7980001 RAL-303_100b 2855 chr3L 7985347 7985396 chr3L 7987700 7987750 NOF 43 2351 12.5 20.0 16.2 2.5 2403 chr3L 7985347 intron nmo + chr3L 7986548 intron nmo + chr3L 7987750 intron nmo + chr3L_43_7985001 chr3L_7985001 RAL-303_100b 2856 chr3L 7995934 7995978 chr3L 7996067 7996104 15 130 40.5 16.5 28.5 0.5 170 chr3L 7995934 intron nmo + chr3L 7996019 intron nmo + chr3L 7996104 intron nmo + chr3L_15_7995001 chr3L_7995001 RAL-303_100b 2857 chr3L 7998854 7998906 chr3L 7998960 7999014 16 106 33.5 32.0 32.8 0.5 160 chr3L 7998854 intron nmo + chr3L 7998934 intron nmo + chr3L 7999014 intron nmo + chr3L_16_7995001 chr3L_7995001 RAL-303_100b 2858 chr3L 8019709 8019730 chr3L 8024148 8024165 NOF 5 4436 7.5 24.5 16.0 0.3 4456 chr3L 8019709 intron nmo + chr3L 8021937 intron nmo + chr3L 8024165 intron nmo + chr3L_5_8020001 chr3L_8020001 RAL-303_100b 2859 chr3L 8019731 8019733 chr3L 8024114 8024174 NOF 6 4427 5.0 8.5 6.8 0.8 4443 chr3L 8019731 intron nmo + chr3L 8021952 intron nmo + chr3L 8024174 intron nmo + chr3L_6_8020001 chr3L_8020001 RAL-303_100b 2860 chr3L 8019735 8019737 chr3L 8024113 8024178 NOF 4 4425 2.5 8.5 5.5 0.6 4443 chr3L 8019735 intron nmo + chr3L 8021956 intron nmo + chr3L 8024178 intron nmo + chr3L_4_8020001 chr3L_8020001 RAL-303_100b 2861 chr3L 8041533 8041570 chr3L 8041632 8041671 25 102 35.0 29.5 32.2 0.8 138 chr3L 8041533 intron nmo + chr3L 8041602 intron nmo + chr3L 8041671 intron nmo + chr3L_25_8040001 chr3L_8040001 RAL-303_100b 2862 chr3L 8081256 8081307 chr3L 8081382 8081435 14 128 9.5 6.0 7.8 1.6 179 chr3L 8081256 intron Ect4 + chr3L 8081346 intron Ect4 + chr3L 8081435 intron Ect4 + chr3L_14_8080001 chr3L_8080001 RAL-303_100b 2863 chr3L 8149751 8149794 chr3L 8149871 8149924 11 128 26.5 36.5 31.5 0.3 173 chr3L 8149751 intron CG13676 - chr3L 8149838 intron CG13676 - chr3L 8149924 intron CG13676 - chr3L_11_8145001 chr3L_8145001 RAL-303_100b 2864 chr3L 8178502 8178518 chr3L 8178604 8178614 18 101 9.5 0.5 5.0 3.0 112 chr3L 8178502 intergenic Nmt -,mthl7 - chr3L 8178558 intergenic mthl7 -,Nmt - chr3L 8178614 intergenic mthl7 -,Nmt - chr3L_18_8175001 chr3L_8175001 RAL-303_100b 2865 chr3L 8208100 8208155 chr3L 8208257 8208312 33 154 47.0 48.0 47.5 0.7 212 chr3L 8208100 intergenic not near genes chr3L 8208206 intergenic not near genes chr3L 8208312 intergenic not near genes chr3L_33_8205001 chr3L_8205001 RAL-303_100b 2866 chr3L 8214708 8214760 chr3L 8214819 8214870 22 107 29.0 27.0 28.0 0.8 162 chr3L 8214708 intergenic not near genes chr3L 8214789 intergenic CG8012 + chr3L 8214870 intergenic CG8012 + chr3L_22_8210001 chr3L_8210001 RAL-303_100b 2867 chr3L 8219529 8219593 chr3L 8219845 8219897 20 309 29.0 41.0 35.0 0.6 368 chr3L 8219529 intergenic not near genes chr3L 8219713 intergenic not near genes chr3L 8219897 intergenic not near genes chr3L_20_8215001 chr3L_8215001 RAL-303_100b 2868 chr3L 8224268 8224288 chr3L 8224373 8224373 10 106 58.5 44.0 51.2 0.2 105 chr3L 8224268 intergenic not near genes chr3L 8224320 intergenic not near genes chr3L 8224373 intergenic not near genes chr3L_10_8220001 chr3L_8220001 RAL-303_100b 2869 chr3L 8226697 8226729 chr3L 8226821 8226853 15 124 8.5 0.5 4.5 2.7 156 chr3L 8226697 intergenic not near genes chr3L 8226775 intergenic not near genes chr3L 8226853 intergenic not near genes chr3L_15_8225001 chr3L_8225001 RAL-303_100b 2870 chr3L 8233567 8233593 chr3L 8238854 8238859 Rt1a 18 5283 7.5 35.5 21.5 0.8 5292 chr3L 8233567 intron CG7213 - chr3L 8236213 intron CG7213 - chr3L 8238859 intron,intron CG7213 -,Dscam4 + chr3L_18_8235001 chr3L_8235001 RAL-303_100b 2871 chr3L 8248289 8248343 chr3L 8248399 8248435 29 112 35.0 41.5 38.2 0.7 146 chr3L 8248289 intron Dscam4 + chr3L 8248362 intron Dscam4 + chr3L 8248435 intron Dscam4 + chr3L_29_8245001 chr3L_8245001 RAL-303_100b 2872 chr3L 8295765 8295826 chr3L 8295948 8296002 68 182 12.5 13.5 13.0 4.9 237 chr3L 8295765 intergenic CG7201 - chr3L 8295884 intergenic not near genes chr3L 8296002 intergenic not near genes chr3L_68_8295001 chr3L_8295001 RAL-303_100b 2873 chr3L 8364497 8364535 chr3L 8364613 8364651 32 116 15.0 4.0 9.5 3.0 154 chr3L 8364497 intergenic not near genes chr3L 8364574 intergenic not near genes chr3L 8364651 intergenic not near genes chr3L_32_8360001 chr3L_8360001 RAL-303_100b 2874 chr3L 8396089 8396094 chr3L 8396192 8396195 4 102 65.0 49.5 57.2 0.1 106 chr3L 8396089 5` UTR CG7120 + chr3L 8396142 5` UTR CG7120 + chr3L 8396195 intron CG7120 + chr3L_4_8395001 chr3L_8395001 RAL-303_100b 2875 chr3L 8396095 8396138 chr3L 8396184 8396241 28 98 53.0 53.5 53.2 0.5 146 chr3L 8396095 5` UTR CG7120 + chr3L 8396168 5` UTR CG7120 + chr3L 8396241 intron CG7120 + chr3L_28_8395001 chr3L_8395001 RAL-303_100b 2876 chr3L 8443543 8443580 chr3L 8443649 8443687 6 106 18.0 20.0 19.0 0.3 144 chr3L 8443543 3` UTR CG6983 - chr3L 8443615 3` UTR CG6983 - chr3L 8443687 3` UTR CG6983 - chr3L_6_8440001 chr3L_8440001 RAL-303_100b 2877 chr3L 8456451 8456473 chr3L 8456569 8456575 13 114 40.0 32.0 36.0 0.4 124 chr3L 8456451 intron Gug + chr3L 8456513 intron Gug + chr3L 8456575 intron Gug + chr3L_13_8455001 chr3L_8455001 RAL-303_100b 2878 chr3L 8456476 8456488 chr3L 8456568 8456585 21 107 29.0 31.5 30.2 0.7 109 chr3L 8456476 intron Gug + chr3L 8456530 intron Gug + chr3L 8456585 intron Gug + chr3L_21_8455001 chr3L_8455001 RAL-303_100b 2879 chr3L 8481745 8481801 chr3L 8490929 8490985 roo 37 9172 20.0 11.5 15.8 2.2 9240 chr3L 8481745 intron CG43163 - chr3L 8486365 intron CG43163 - chr3L 8490985 intron CG43163 - chr3L_37_8485001 chr3L_8485001 RAL-303_100b 2880 chr3L 8498301 8498303 chr3L 8505793 8505795 blood 4 7492 0.5 27.5 14.0 0.3 7494 chr3L 8498301 intron CG43163 - chr3L 8502048 intron CG43163 - chr3L 8505795 intron CG43163 - chr3L_4_8500001 chr3L_8500001 RAL-303_100b 2881 chr3L 8498305 8498325 chr3L 8505775 8505817 blood 21 7489 2.5 17.5 10.0 1.9 7512 chr3L 8498305 intron CG43163 - chr3L 8502061 intron CG43163 - chr3L 8505817 intron CG43163 - chr3L_21_8500001 chr3L_8500001 RAL-303_100b 2882 chr3L 8576252 8576280 chr3L 8576371 8576398 12 119 4.5 15.5 10.0 1.1 146 chr3L 8576252 intergenic CG6638 - chr3L 8576325 intergenic CG6638 -,CG43078 + chr3L 8576398 intergenic CG6638 -,CG43078 + chr3L_12_8575001 chr3L_8575001 RAL-303_100b 2883 chr3L 8579825 8579883 chr3L 8579930 8579988 65 100 17.5 18.5 18.0 3.4 163 chr3L 8579825 intron CG43078 + chr3L 8579906 intron CG43078 + chr3L 8579988 intron CG43078 + chr3L_65_8575001 chr3L_8575001 RAL-303_100b 2884 chr3L 8589552 8589581 chr3L 8589664 8589670 17 110 33.5 42.0 37.8 0.4 118 chr3L 8589552 intron CG43078 + chr3L 8589611 intron CG43078 + chr3L 8589670 intron CG43078 + chr3L_17_8585001 chr3L_8585001 RAL-303_100b 2885 chr3L 8615003 8615061 chr3L 8615107 8615165 31 102 24.0 15.0 19.5 1.5 162 chr3L 8615003 exon CG6282 + chr3L 8615084 intron CG6282 + chr3L 8615165 intron CG6282 + chr3L_31_8615001 chr3L_8615001 RAL-303_100b 2886 chr3L 8619483 8619546 chr3L 8619597 8619640 25 113 35.5 41.0 38.2 0.6 157 chr3L 8619483 intergenic S-Lap1 +,S-Lap2 + chr3L 8619562 intergenic S-Lap1 +,S-Lap2 + chr3L 8619640 intergenic S-Lap1 +,S-Lap2 + chr3L_25_8615001 chr3L_8615001 RAL-303_100b 2887 chr3L 8627141 8627146 chr3L 8627252 8627263 10 116 37.0 32.5 34.8 0.3 122 chr3L 8627141 intron Zasp66 + chr3L 8627202 intron Zasp66 + chr3L 8627263 intron Zasp66 + chr3L_10_8625001 chr3L_8625001 RAL-303_100b 2888 chr3L 8642696 8642712 chr3L 8642802 8642812 7 105 32.5 34.0 33.2 0.2 116 chr3L 8642696 intron Cpr66D + chr3L 8642754 intron Cpr66D + chr3L 8642812 intron Cpr66D + chr3L_7_8640001 chr3L_8640001 RAL-303_100b 2889 chr3L 8697267 8697289 chr3L 8697372 8697394 8 105 26.0 25.5 25.8 0.3 127 chr3L 8697267 intergenic not near genes chr3L 8697330 intergenic not near genes chr3L 8697394 intergenic not near genes chr3L_8_8695001 chr3L_8695001 RAL-303_100b 2890 chr3L 8751685 8751702 chr3L 8751790 8751795 4 102 44.0 62.0 53.0 0.1 110 chr3L 8751685 intergenic CR44527 - chr3L 8751740 intergenic CR44527 - chr3L 8751795 intergenic CR44527 - chr3L_4_8750001 chr3L_8750001 RAL-303_100b 2891 chr3L 8752389 8752417 chr3L 8752602 8752629 17 213 23.0 14.5 18.8 0.9 240 chr3L 8752389 intergenic not near genes chr3L 8752509 intergenic not near genes chr3L 8752629 intergenic not near genes chr3L_17_8750001 chr3L_8750001 RAL-303_100b 2892 chr3L 8772030 8772086 chr3L 8772133 8772164 32 99 47.0 50.5 48.8 0.6 134 chr3L 8772030 intron Fhos + chr3L 8772097 intron Fhos + chr3L 8772164 intron Fhos + chr3L_32_8770001 chr3L_8770001 RAL-303_100b 2893 chr3L 8791252 8791309 chr3L 8796697 8796752 I-element 36 5441 11.0 0.0 5.5 5.5 5500 chr3L 8791252 exon Fhos + chr3L 8794002 intron Fhos + chr3L 8796752 intron Fhos + chr3L_36_8790001 chr3L_8790001 RAL-303_100b 2894 chr3L 8827064 8827131 chr3L 8827306 8827366 12 234 13.0 43.5 28.2 0.4 302 chr3L 8827064 intergenic dally + chr3L 8827215 intergenic dally + chr3L 8827366 intergenic dally + chr3L_12_8825001 chr3L_8825001 RAL-303_100b 2895 chr3L 8827524 8827572 chr3L 8827619 8827668 24 96 35.0 39.0 37.0 0.6 144 chr3L 8827524 5` UTR dally + chr3L 8827596 5` UTR dally + chr3L 8827668 5` UTR dally + chr3L_24_8825001 chr3L_8825001 RAL-303_100b 2896 chr3L 8839721 8839729 chr3L 8839826 8839829 5 104 20.5 7.0 13.8 0.3 108 chr3L 8839721 intron dally + chr3L 8839775 intron dally + chr3L 8839829 intron dally + chr3L_5_8835001 chr3L_8835001 RAL-303_100b 2897 chr3L 8839731 8839751 chr3L 8839811 8839856 7 97 12.5 3.5 8.0 0.8 125 chr3L 8839731 intron dally + chr3L 8839794 intron dally + chr3L 8839856 intron dally + chr3L_7_8835001 chr3L_8835001 RAL-303_100b 2898 chr3L 8849198 8849243 chr3L 8849302 8849353 12 102 35.5 42.5 39.0 0.3 155 chr3L 8849198 intron dally + chr3L 8849276 intron dally + chr3L 8849353 intron dally + chr3L_12_8845001 chr3L_8845001 RAL-303_100b 2899 chr3L 8928244 8928247 chr3L 8928345 8928348 5 101 37.5 11.5 24.5 0.2 104 chr3L 8928244 intron Tsp66E + chr3L 8928296 intron Tsp66E + chr3L 8928348 intron Tsp66E + chr3L_5_8925001 chr3L_8925001 RAL-303_100b 2900 chr3L 8928248 8928297 chr3L 8928344 8928398 25 100 8.0 10.5 9.2 2.5 150 chr3L 8928248 intron Tsp66E + chr3L 8928323 intron Tsp66E + chr3L 8928398 intron Tsp66E + chr3L_25_8925001 chr3L_8925001 RAL-303_100b 2901 chr3L 8950530 8950538 chr3L 8950644 8950657 7 118 48.0 44.5 46.2 0.1 127 chr3L 8950530 intron,intron CG43783 -,orb2 - chr3L 8950594 intron,intron CG43783 -,orb2 - chr3L 8950657 intron,intron CG43783 -,orb2 - chr3L_7_8950001 chr3L_8950001 RAL-303_100b 2902 chr3L 8950540 8950580 chr3L 8950642 8950699 17 114 44.0 43.0 43.5 0.4 159 chr3L 8950540 intron,intron CG43783 -,orb2 - chr3L 8950620 intron,intron CG43783 -,orb2 - chr3L 8950699 intron,intron CG43783 -,orb2 - chr3L_17_8950001 chr3L_8950001 RAL-303_100b 2903 chr3L 8959372 8959399 chr3L 8959558 8959585 15 186 48.0 27.0 37.5 0.4 213 chr3L 8959372 intron CG13313 + chr3L 8959478 intron CG13313 + chr3L 8959585 intron CG13313 + chr3L_15_8955001 chr3L_8955001 RAL-303_100b 2904 chr3L 9003921 9003978 chr3L 9004031 9004060 35 106 41.5 40.5 41.0 0.8 139 chr3L 9003921 intergenic not near genes chr3L 9003990 intergenic not near genes chr3L 9004060 intergenic not near genes chr3L_35_9000001 chr3L_9000001 RAL-303_100b 2905 chr3L 9009931 9009976 chr3L 9010060 9010105 29 129 6.5 15.5 11.0 2.4 174 chr3L 9009931 intergenic CG5194 - chr3L 9010018 intergenic CG5194 - chr3L 9010105 intergenic CG5194 - chr3L_29_9010001 chr3L_9010001 RAL-303_100b 2906 chr3L 9011108 9011153 chr3L 9011220 9011234 16 108 35.5 28.0 31.8 0.5 126 chr3L 9011108 intergenic not near genes chr3L 9011171 intergenic not near genes chr3L 9011234 intergenic not near genes chr3L_16_9010001 chr3L_9010001 RAL-303_100b 2907 chr3L 9013689 9013693 chr3L 18417066 18417066 12 9403375 84.0 68.5 76.2 0.2 9403377 chr3L 9013689 intron Doc2 - chr3L 13715378 intron bru-3 - chr3L 18417066 intergenic not near genes chr3L_12_13715001 chr3L_13715001 RAL-303_100b 2908 chr3L 9022734 9022784 chr3L 9022835 9022885 23 100 24.5 17.5 21.0 1.0 151 chr3L 9022734 intergenic not near genes chr3L 9022810 intergenic not near genes chr3L 9022885 intergenic not near genes chr3L_23_9020001 chr3L_9020001 RAL-303_100b 2909 chr3L 9024478 9024534 chr3L 9024583 9024639 27 102 34.0 33.5 33.8 0.8 161 chr3L 9024478 intergenic not near genes chr3L 9024558 intergenic not near genes chr3L 9024639 intergenic not near genes chr3L_27_9020001 chr3L_9020001 RAL-303_100b 2910 chr3L 9028685 9028741 chr3L 9029073 9029129 18 387 34.0 48.5 41.2 0.4 444 chr3L 9028685 intergenic not near genes chr3L 9028907 intergenic not near genes chr3L 9029129 intergenic not near genes chr3L_18_9025001 chr3L_9025001 RAL-303_100b 2911 chr3L 9029131 9029178 chr3L 9029237 9029268 23 104 47.5 27.5 37.5 0.6 137 chr3L 9029131 intergenic not near genes chr3L 9029200 intergenic not near genes chr3L 9029268 intergenic not near genes chr3L_23_9025001 chr3L_9025001 RAL-303_100b 2912 chr3L 9030402 9030445 chr3L 9030506 9030549 19 103 30.5 23.0 26.8 0.7 147 chr3L 9030402 intergenic not near genes chr3L 9030476 intergenic not near genes chr3L 9030549 intergenic not near genes chr3L_19_9030001 chr3L_9030001 RAL-303_100b 2913 chr3L 9036271 9036292 chr3L 9036382 9036403 8 110 48.0 49.0 48.5 0.2 132 chr3L 9036271 intergenic not near genes chr3L 9036337 intergenic not near genes chr3L 9036403 intergenic not near genes chr3L_8_9035001 chr3L_9035001 RAL-303_100b 2914 chr3L 9040211 9040237 chr3L 9040382 9040409 15 171 20.5 31.0 25.8 0.6 198 chr3L 9040211 intergenic not near genes chr3L 9040310 intergenic not near genes chr3L 9040409 intergenic not near genes chr3L_15_9040001 chr3L_9040001 RAL-303_100b 2915 chr3L 9042515 9042564 chr3L 9042618 9042651 25 99 58.5 54.0 56.2 0.4 136 chr3L 9042515 intron Doc1 + chr3L 9042583 intron Doc1 + chr3L 9042651 intron Doc1 + chr3L_25_9040001 chr3L_9040001 RAL-303_100b 2916 chr3L 9047066 9047075 chr3L 9047178 9047187 8 111 2.5 0.5 1.5 3.2 121 chr3L 9047066 intergenic CG5144 + chr3L 9047126 intergenic CG5144 + chr3L 9047187 intergenic CG5144 + chr3L_8_9045001 chr3L_9045001 RAL-303_100b 2917 chr3L 9061109 9061163 chr3L 9061242 9061296 31 128 41.5 47.5 44.5 0.7 187 chr3L 9061109 intron Argk - chr3L 9061202 intron Argk - chr3L 9061296 intron Argk - chr3L_31_9060001 chr3L_9060001 RAL-303_100b 2918 chr3L 9067292 9067351 chr3L 9067396 9067455 23 104 38.5 43.0 40.8 0.6 163 chr3L 9067292 3` UTR CG4911 - chr3L 9067374 3` UTR CG4911 - chr3L 9067455 3` UTR CG4911 - chr3L_23_9065001 chr3L_9065001 RAL-303_100b 2919 chr3L 9068451 9068505 chr3L 9068558 9068612 22 105 43.5 42.5 43.0 0.5 161 chr3L 9068451 3` UTR CG4911 - chr3L 9068532 3` UTR CG4911 - chr3L 9068612 3` UTR CG4911 - chr3L_22_9065001 chr3L_9065001 RAL-303_100b 2920 chr3L 9076901 9076915 chr3L 9084486 9084500 412 20 7585 45.0 22.0 33.5 0.6 7599 chr3L 9076901 exon Tequila + chr3L 9080700 intron Tequila + chr3L 9084500 exon Tequila + chr3L_20_9080001 chr3L_9080001 RAL-303_100b 2921 chr3L 9076916 9076956 chr3L 9084485 9084536 412 33 7583 16.5 21.0 18.8 1.7 7620 chr3L 9076916 exon Tequila + chr3L 9080726 intron Tequila + chr3L 9084536 exon Tequila + chr3L_33_9080001 chr3L_9080001 RAL-303_100b 2922 chr3L 9086217 9086222 chr3L 9086325 9086330 4 108 56.5 61.0 58.8 0.1 113 chr3L 9086217 exon Tequila + chr3L 9086274 exon Tequila + chr3L 9086330 exon Tequila + chr3L_4_9085001 chr3L_9085001 RAL-303_100b 2923 chr3L 9096177 9096200 chr3L 9096305 9096307 4 118 48.5 17.5 33.0 0.1 130 chr3L 9096177 intergenic not near genes chr3L 9096242 intergenic not near genes chr3L 9096307 intergenic not near genes chr3L_4_9095001 chr3L_9095001 RAL-303_100b 2924 chr3L 9103622 9103631 chr3L 9103733 9103742 4 111 16.5 17.5 17.0 0.2 120 chr3L 9103622 intron bol - chr3L 9103682 intron bol - chr3L 9103742 intron bol - chr3L_4_9100001 chr3L_9100001 RAL-303_100b 2925 chr3L 9109732 9109774 chr3L 9110551 9110589 24 818 18.0 52.0 35.0 0.7 857 chr3L 9109732 intron bol - chr3L 9110160 intron bol - chr3L 9110589 intron bol - chr3L_24_9110001 chr3L_9110001 RAL-303_100b 2926 chr3L 9130531 9130582 chr3L 9134317 9134368 412 45 3781 25.0 19.0 22.0 2.0 3837 chr3L 9130531 intergenic bol - chr3L 9132450 intergenic not near genes chr3L 9134368 intergenic Dhpr + chr3L_45_9130001 chr3L_9130001 RAL-303_100b 2927 chr3L 9164674 9164690 chr3L 9166166 9166182 hobo 15 1491 47.0 2.5 24.8 0.6 1508 chr3L 9164674 intron Rdl - chr3L 9165428 intron Rdl - chr3L 9166182 intron Rdl - chr3L_15_9165001 chr3L_9165001 RAL-303_100b 2928 chr3L 9164691 9164723 chr3L 9166162 9166199 hobo 29 1487 28.5 2.0 15.2 1.8 1508 chr3L 9164691 intron Rdl - chr3L 9165445 intron Rdl - chr3L 9166199 intron Rdl - chr3L_29_9165001 chr3L_9165001 RAL-303_100b 2929 chr3L 9219221 9219233 chr3L 9219918 9219921 jockey 7 696 41.0 16.0 28.5 0.2 700 chr3L 9219221 intergenic not near genes chr3L 9219571 intergenic not near genes chr3L 9219921 intergenic not near genes chr3L_7_9215001 chr3L_9215001 RAL-303_100b 2930 chr3L 9219234 9219277 chr3L 9219916 9219944 jockey 40 689 18.0 13.0 15.5 2.4 710 chr3L 9219234 intergenic not near genes chr3L 9219589 intergenic not near genes chr3L 9219944 intergenic not near genes chr3L_40_9215001 chr3L_9215001 RAL-303_100b 2931 chr3L 9237470 9237522 chr3L 9237574 9237621 9 99 16.0 1.5 8.8 0.9 151 chr3L 9237470 intergenic not near genes chr3L 9237546 intergenic not near genes chr3L 9237621 intergenic not near genes chr3L_9_9235001 chr3L_9235001 RAL-303_100b 2932 chr3L 9260523 9260575 chr3L 9260631 9260689 24 104 36.5 32.5 34.5 0.7 166 chr3L 9260523 intron GluRIB + chr3L 9260606 intron GluRIB + chr3L 9260689 intron GluRIB + chr3L_24_9260001 chr3L_9260001 RAL-303_100b 2933 chr3L 9270599 9270651 chr3L 9278379 9278414 roo 37 7772 6.0 15.0 10.5 3.2 7815 chr3L 9270599 intron GluRIB + chr3L 9274506 intron GluRIB + chr3L 9278414 exon GluRIB + chr3L_37_9270001 chr3L_9270001 RAL-303_100b 2934 chr3L 9290031 9290063 chr3L 9290132 9290164 10 99 0.5 3.5 2.0 3.3 133 chr3L 9290031 intergenic not near genes chr3L 9290098 intergenic not near genes chr3L 9290164 intergenic not near genes chr3L_10_9290001 chr3L_9290001 RAL-303_100b 2935 chr3L 9302450 9302467 chr3L 9302560 9302568 15 109 19.5 0.0 9.8 1.4 118 chr3L 9302450 intergenic not near genes chr3L 9302509 intergenic not near genes chr3L 9302568 intergenic not near genes chr3L_15_9300001 chr3L_9300001 RAL-303_100b 2936 chr3L 9307796 9307796 chr3L 22908066 22908066 14 13600270 60.5 90.0 75.2 0.2 13600270 chr3L 9307796 intergenic not near genes chr3L 16107931 intron Zn72D - chr3L 22908066 intergenic not near genes chr3L_14_16105001 chr3L_16105001 RAL-303_100b 2937 chr3L 9320700 9320758 chr3L 9320803 9320861 10 102 21.5 16.0 18.8 0.5 161 chr3L 9320700 intergenic not near genes chr3L 9320780 intergenic not near genes chr3L 9320861 intergenic not near genes chr3L_10_9320001 chr3L_9320001 RAL-303_100b 2938 chr3L 9344200 9344225 chr3L 9344290 9344328 19 100 31.0 50.0 40.5 0.5 128 chr3L 9344200 intron PGRP-LC + chr3L 9344264 intron PGRP-LC + chr3L 9344328 intron PGRP-LC + chr3L_19_9340001 chr3L_9340001 RAL-303_100b 2939 chr3L 9350253 9350287 chr3L 9352240 9352287 22 1994 70.5 88.0 79.2 0.3 2034 chr3L 9350253 intron PGRP-LF + chr3L 9351270 exon PGRP-LF + chr3L 9352287 exon UGP - chr3L_22_9350001 chr3L_9350001 RAL-303_100b 2940 chr3L 9359576 9359588 chr3L 9359692 9359704 5 116 51.5 37.5 44.5 0.1 128 chr3L 9359576 3` UTR CG32039 + chr3L 9359640 3` UTR CG32039 + chr3L 9359704 3` UTR CG32039 + chr3L_5_9355001 chr3L_9355001 RAL-303_100b 2941 chr3L 9359593 9359618 chr3L 9359683 9359734 9 113 42.5 38.0 40.2 0.2 141 chr3L 9359593 3` UTR CG32039 + chr3L 9359664 3` UTR CG32039 + chr3L 9359734 3` UTR CG32039 + chr3L_9_9355001 chr3L_9355001 RAL-303_100b 2942 chr3L 9390826 9390863 chr3L 9390978 9391018 17 154 48.5 42.5 45.5 0.4 192 chr3L 9390826 intron CG4080 - chr3L 9390922 intron CG4080 - chr3L 9391018 intron CG4080 - chr3L_17_9390001 chr3L_9390001 RAL-303_100b 2943 chr3L 9392444 9392449 chr3L 9395290 9395295 Doc 7 2846 16.5 10.5 13.5 0.5 2851 chr3L 9392444 intron CG4080 - chr3L 9393870 intron CG4080 - chr3L 9395295 intron CG4080 - chr3L_7_9390001 chr3L_9390001 RAL-303_100b 2944 chr3L 9424967 9424975 chr3L 9425069 9425077 6 102 44.0 36.5 40.2 0.1 110 chr3L 9424967 intron CG3967 - chr3L 9425022 intron CG3967 - chr3L 9425077 intron CG3967 - chr3L_6_9425001 chr3L_9425001 RAL-303_100b 2945 chr3L 9429515 9429542 chr3L 9429634 9429658 5 110 39.5 57.5 48.5 0.1 143 chr3L 9429515 intron,3` UTR RpS17 -,snoRNA:Psi28S-612 - chr3L 9429586 intron RpS17 - chr3L 9429658 intron RpS17 - chr3L_5_9425001 chr3L_9425001 RAL-303_100b 2946 chr3L 9442519 9442524 chr3L 9442653 9442669 5 141 29.0 38.0 33.5 0.1 150 chr3L 9442519 intergenic Bet3 -,Nf-YA - chr3L 9442594 intergenic Bet3 -,Nf-YA - chr3L 9442669 intergenic Bet3 -,Nf-YA - chr3L_5_9440001 chr3L_9440001 RAL-303_100b 2947 chr3L 9443490 9443493 chr3L 9445306 9445309 S-element 4 1816 20.0 12.5 16.2 0.2 1819 chr3L 9443490 intron CG33926 + chr3L 9444400 intron CG33926 + chr3L 9445309 intron CG33926 + chr3L_4_9440001 chr3L_9440001 RAL-303_100b 2948 chr3L 9443495 9443500 chr3L 9445304 9445316 S-element 9 1815 19.0 12.5 15.8 0.5 1821 chr3L 9443495 intron CG33926 + chr3L 9444406 intron CG33926 + chr3L 9445316 intron CG33926 + chr3L_9_9440001 chr3L_9440001 RAL-303_100b 2949 chr3L 9443504 9443540 chr3L 9445303 9445356 S-element 34 1812 9.0 12.5 10.8 2.9 1852 chr3L 9443504 intron CG33926 + chr3L 9444430 intron CG33926 + chr3L 9445356 intron CG33926 + chr3L_34_9440001 chr3L_9440001 RAL-303_100b 2950 chr3L 9492383 9492404 chr3L 9492489 9492510 8 102 55.0 24.0 39.5 0.2 127 chr3L 9492383 intergenic CG32037 - chr3L 9492446 intergenic CG32037 - chr3L 9492510 intergenic CG32037 - chr3L_8_9490001 chr3L_9490001 RAL-303_100b 2951 chr3L 9501676 9501733 chr3L 9502187 9502241 roo 47 508 10.5 14.5 12.5 3.5 565 chr3L 9501676 intron path - chr3L 9501958 intron path - chr3L 9502241 intron path - chr3L_47_9500001 chr3L_9500001 RAL-303_100b 2952 chr3L 9502591 9502637 chr3L 9502696 9502742 20 105 45.5 45.5 45.5 0.4 151 chr3L 9502591 intron path - chr3L 9502666 intron path - chr3L 9502742 intron path - chr3L_20_9500001 chr3L_9500001 RAL-303_100b 2953 chr3L 9503440 9503463 chr3L 9503554 9503577 15 114 20.0 35.5 27.8 0.5 137 chr3L 9503440 intron path - chr3L 9503508 intron path - chr3L 9503577 intron path - chr3L_15_9500001 chr3L_9500001 RAL-303_100b 2954 chr3L 9510885 9510958 chr3L 9511003 9511059 22 108 36.5 44.5 40.5 0.5 174 chr3L 9510885 intron RpS9 - chr3L 9510972 intron RpS9 - chr3L 9511059 exon RpS9 - chr3L_22_9510001 chr3L_9510001 RAL-303_100b 2955 chr3L 9513741 9513770 chr3L 9513852 9513880 24 110 32.0 37.0 34.5 0.7 139 chr3L 9513741 intergenic CG33702 -,CG33700 - chr3L 9513810 intergenic CG33700 -,CG33702 - chr3L 9513880 intergenic CG33700 -,CG33702 - chr3L_24_9510001 chr3L_9510001 RAL-303_100b 2956 chr3L 9533728 9533786 chr3L 9541311 9541371 412 34 7577 15.0 35.0 25.0 1.3 7643 chr3L 9533728 intergenic not near genes chr3L 9537550 intergenic not near genes chr3L 9541371 intergenic not near genes chr3L_34_9535001 chr3L_9535001 RAL-303_100b 2957 chr3L 9559352 9559411 chr3L 9559512 9559570 21 151 21.5 28.5 25.0 0.8 218 chr3L 9559352 intron CG42673 + chr3L 9559461 intron CG42673 + chr3L 9559570 intron CG42673 + chr3L_21_9555001 chr3L_9555001 RAL-303_100b 2958 chr3L 9559985 9560008 chr3L 9560091 9560108 8 103 12.5 33.5 23.0 0.3 123 chr3L 9559985 intron CG42673 + chr3L 9560046 intron CG42673 + chr3L 9560108 intron CG42673 + chr3L_8_9560001 chr3L_9560001 RAL-303_100b 2959 chr3L 9561326 9561361 chr3L 9561429 9561465 12 100 23.0 16.5 19.8 0.6 139 chr3L 9561326 intron CG42673 + chr3L 9561396 intron CG42673 + chr3L 9561465 intron CG42673 + chr3L_12_9560001 chr3L_9560001 RAL-303_100b 2960 chr3L 9571877 9571930 chr3L 9572250 9572272 jockey 49 371 14.5 13.0 13.8 3.3 395 chr3L 9571877 intron CG42673 + chr3L 9572074 intron CG42673 + chr3L 9572272 intron CG42673 + chr3L_49_9570001 chr3L_9570001 RAL-303_100b 2961 chr3L 9575885 9575949 chr3L 9580988 9581049 jockey 37 5099 12.5 14.5 13.5 2.6 5164 chr3L 9575885 intron CG42673 + chr3L 9578467 intron CG42673 + chr3L 9581049 intron CG42673 + chr3L_37_9575001 chr3L_9575001 RAL-303_100b 2962 chr3L 9629709 9629768 chr3L 9629810 9629869 27 100 11.5 12.0 11.8 2.1 160 chr3L 9629709 intron CG8336 + chr3L 9629789 intron CG8336 + chr3L 9629869 intron CG8336 + chr3L_27_9625001 chr3L_9625001 RAL-303_100b 2963 chr3L 9715572 9715579 chr3L 9715673 9715680 6 100 29.5 11.5 20.5 0.3 108 chr3L 9715572 intron vsg + chr3L 9715626 intron vsg + chr3L 9715680 intron vsg + chr3L_6_9715001 chr3L_9715001 RAL-303_100b 2964 chr3L 9715580 9715627 chr3L 9715672 9715705 30 98 7.0 10.5 8.8 3.1 125 chr3L 9715580 intron vsg + chr3L 9715642 intron vsg + chr3L 9715705 intron vsg + chr3L_30_9715001 chr3L_9715001 RAL-303_100b 2965 chr3L 9758688 9758750 chr3L 9758801 9758859 54 107 14.5 5.5 10.0 4.9 171 chr3L 9758688 intron CG42268 - chr3L 9758774 intron CG42268 - chr3L 9758859 intron CG42268 - chr3L_54_9755001 chr3L_9755001 RAL-303_100b 2966 chr3L 9775341 9775398 chr3L 9775725 9775778 37 383 1.0 11.5 6.2 5.1 437 chr3L 9775341 intron CG8177 + chr3L 9775560 intron CG8177 + chr3L 9775778 intron CG8177 + chr3L_37_9775001 chr3L_9775001 RAL-303_100b 2967 chr3L 9824126 9824180 chr3L 9824230 9824259 30 102 11.0 0.0 5.5 4.6 133 chr3L 9824126 intron CG43897 + chr3L 9824192 intron CG43897 + chr3L 9824259 intron CG43897 + chr3L_30_9820001 chr3L_9820001 RAL-303_100b 2968 chr3L 9918855 9918867 chr3L 9918975 9918987 14 119 37.5 12.5 25.0 0.5 132 chr3L 9918855 intron CG34356 + chr3L 9918921 intron CG34356 + chr3L 9918987 intron CG34356 + chr3L_14_9915001 chr3L_9915001 RAL-303_100b 2969 chr3L 9918869 9918910 chr3L 9918974 9919017 49 117 15.0 12.0 13.5 3.4 148 chr3L 9918869 intron CG34356 + chr3L 9918943 intron CG34356 + chr3L 9919017 intron CG34356 + chr3L_49_9915001 chr3L_9915001 RAL-303_100b 2970 chr3L 9929645 9929699 chr3L 9938450 9938504 roo 42 8802 17.5 16.0 16.8 2.4 8859 chr3L 9929645 intron CG34356 + chr3L 9934074 intron CG34356 + chr3L 9938504 intron CG34356 + chr3L_42_9930001 chr3L_9930001 RAL-303_100b 2971 chr3L 10002914 10002942 chr3L 10003034 10003062 21 118 15.5 0.0 7.8 2.4 148 chr3L 10002914 intron dpr6 + chr3L 10002988 intron dpr6 + chr3L 10003062 intron dpr6 + chr3L_21_10000001 chr3L_10000001 RAL-303_100b 2972 chr3L 10027926 10027983 chr3L 10028046 10028067 41 111 12.0 9.0 10.5 3.6 141 chr3L 10027926 intron dpr6 + chr3L 10027996 intron dpr6 + chr3L 10028067 intron dpr6 + chr3L_41_10025001 chr3L_10025001 RAL-303_100b 2973 chr3L 10032552 10032560 chr3L 10032664 10032667 8 111 0.0 22.5 11.2 0.7 115 chr3L 10032552 intron dpr6 + chr3L 10032610 intron dpr6 + chr3L 10032667 intron dpr6 + chr3L_8_10030001 chr3L_10030001 RAL-303_100b 2974 chr3L 10035190 10035245 chr3L 10035302 10035357 64 110 16.5 13.5 15.0 4.0 167 chr3L 10035190 intron dpr6 + chr3L 10035274 intron dpr6 + chr3L 10035357 intron dpr6 + chr3L_64_10035001 chr3L_10035001 RAL-303_100b 2975 chr3L 10049519 10049573 chr3L 10049624 10049678 53 103 14.0 17.0 15.5 3.2 159 chr3L 10049519 intron dpr6 + chr3L 10049598 intron dpr6 + chr3L 10049678 intron dpr6 + chr3L_53_10045001 chr3L_10045001 RAL-303_100b 2976 chr3L 10060085 10060117 chr3L 10067689 10067721 17.6 37 7603 34.0 18.5 26.2 1.4 7636 chr3L 10060085 intron dpr6 + chr3L 10063903 intron dpr6 + chr3L 10067721 intron dpr6 + chr3L_37_10060001 chr3L_10060001 RAL-303_100b 2977 chr3L 10085441 10085467 chr3L 10085574 10085600 22 133 10.0 14.0 12.0 1.7 159 chr3L 10085441 intron dpr6 + chr3L 10085520 intron dpr6 + chr3L 10085600 intron dpr6 + chr3L_22_10085001 chr3L_10085001 RAL-303_100b 2978 chr3L 10099145 10099187 chr3L 10099273 10099325 49 136 7.0 16.0 11.5 3.9 180 chr3L 10099145 intron dpr6 + chr3L 10099235 intron dpr6 + chr3L 10099325 intron dpr6 + chr3L_49_10095001 chr3L_10095001 RAL-303_100b 2979 chr3L 10110441 10110445 chr3L 10110552 10110554 6 111 19.0 0.0 9.5 0.6 113 chr3L 10110441 intron dpr6 + chr3L 10110498 intron dpr6 + chr3L 10110554 intron dpr6 + chr3L_6_10110001 chr3L_10110001 RAL-303_100b 2980 chr3L 10161425 10161433 chr3L 10161529 10161535 9 103 0.5 28.0 14.2 0.6 110 chr3L 10161425 intron dpr10 - chr3L 10161480 intron dpr10 - chr3L 10161535 intron dpr10 - chr3L_9_10160001 chr3L_10160001 RAL-303_100b 2981 chr3L 10161435 10161461 chr3L 10161524 10161565 30 100 0.5 20.5 10.5 2.6 130 chr3L 10161435 intron dpr10 - chr3L 10161500 intron dpr10 - chr3L 10161565 intron dpr10 - chr3L_30_10160001 chr3L_10160001 RAL-303_100b 2982 chr3L 10181925 10181927 chr3L 10182154 10182155 6 229 9.5 44.5 27.0 0.2 230 chr3L 10181925 intron dpr10 - chr3L 10182040 intron dpr10 - chr3L 10182155 intron dpr10 - chr3L_6_10180001 chr3L_10180001 RAL-303_100b 2983 chr3L 10189487 10189495 chr3L 10189692 10189700 5 206 46.5 16.5 31.5 0.2 213 chr3L 10189487 intergenic not near genes chr3L 10189594 intergenic not near genes chr3L 10189700 intergenic not near genes chr3L_5_10185001 chr3L_10185001 RAL-303_100b 2984 chr3L 10282601 10282658 chr3L 10282762 10282819 47 158 11.0 14.5 12.8 3.4 218 chr3L 10282601 intergenic not near genes chr3L 10282710 intergenic not near genes chr3L 10282819 intergenic not near genes chr3L_47_10280001 chr3L_10280001 RAL-303_100b 2985 chr3L 10298653 10298702 chr3L 10298759 10298814 52 110 0.0 6.5 3.2 12.4 161 chr3L 10298653 intergenic not near genes chr3L 10298734 intergenic not near genes chr3L 10298814 intergenic not near genes chr3L_52_10295001 chr3L_10295001 RAL-303_100b 2986 chr3L 10300027 10300060 chr3L 10300144 10300166 18 115 11.5 7.0 9.2 1.8 139 chr3L 10300027 intergenic not near genes chr3L 10300096 intergenic not near genes chr3L 10300166 intergenic not near genes chr3L_18_10300001 chr3L_10300001 RAL-303_100b 2987 chr3L 10308713 10308768 chr3L 10308815 10308845 37 99 9.5 14.0 11.8 2.9 132 chr3L 10308713 intergenic not near genes chr3L 10308779 intergenic not near genes chr3L 10308845 intergenic not near genes chr3L_37_10305001 chr3L_10305001 RAL-303_100b 2988 chr3L 10328091 10328127 chr3L 10328228 10328264 36 136 18.5 16.0 17.2 2.0 173 chr3L 10328091 intergenic not near genes chr3L 10328178 intergenic not near genes chr3L 10328264 intergenic not near genes chr3L_36_10325001 chr3L_10325001 RAL-303_100b 2989 chr3L 10376106 10376136 chr3L 10376207 10376237 15 101 21.0 14.0 17.5 0.8 131 chr3L 10376106 intergenic not near genes chr3L 10376172 intergenic not near genes chr3L 10376237 intergenic not near genes chr3L_15_10375001 chr3L_10375001 RAL-303_100b 2990 chr3L 10414928 10414935 chr3L 10417325 10417332 Doc 8 2397 22.0 19.0 20.5 0.4 2404 chr3L 10414928 intergenic CG12362 + chr3L 10416130 intergenic not near genes chr3L 10417332 intergenic not near genes chr3L_8_10415001 chr3L_10415001 RAL-303_100b 2991 chr3L 10414937 10414972 chr3L 10417313 10417369 Doc 43 2395 8.5 11.5 10.0 3.9 2432 chr3L 10414937 intergenic CG12362 + chr3L 10416153 intergenic not near genes chr3L 10417369 intergenic not near genes chr3L_43_10415001 chr3L_10415001 RAL-303_100b 2992 chr3L 10417548 10417552 chr3L 10417650 10417654 6 102 43.0 18.5 30.8 0.2 106 chr3L 10417548 intergenic not near genes chr3L 10417601 intergenic not near genes chr3L 10417654 intergenic not near genes chr3L_6_10415001 chr3L_10415001 RAL-303_100b 2993 chr3L 10417553 10417603 chr3L 10417648 10417684 51 96 19.0 15.5 17.2 2.8 131 chr3L 10417553 intergenic not near genes chr3L 10417618 intergenic not near genes chr3L 10417684 intergenic not near genes chr3L_51_10415001 chr3L_10415001 RAL-303_100b 2994 chr3L 10458668 10458708 chr3L 10458770 10458804 33 101 22.0 14.5 18.2 1.7 136 chr3L 10458668 intergenic Gem3 - chr3L 10458736 intergenic Gem3 - chr3L 10458804 intergenic Gem3 - chr3L_33_10455001 chr3L_10455001 RAL-303_100b 2995 chr3L 10458709 10458723 chr3L 10458768 10458825 14 95 13.5 14.5 14.0 0.9 116 chr3L 10458709 intergenic Gem3 - chr3L 10458767 intergenic Gem3 - chr3L 10458825 intergenic Gem3 - chr3L_14_10455001 chr3L_10455001 RAL-303_100b 2996 chr3L 10469908 10469920 chr3L 10470009 10470021 14 101 33.5 2.0 17.8 0.7 113 chr3L 10469908 intergenic not near genes chr3L 10469964 intergenic not near genes chr3L 10470021 intergenic not near genes chr3L_14_10465001 chr3L_10465001 RAL-303_100b 2997 chr3L 10469921 10469964 chr3L 10470007 10470065 36 97 7.5 2.5 5.0 6.0 144 chr3L 10469921 intergenic not near genes chr3L 10469993 intergenic not near genes chr3L 10470065 intergenic not near genes chr3L_36_10465001 chr3L_10465001 RAL-303_100b 2998 chr3L 10502021 10502069 chr3L 10502136 10502149 32 117 10.5 12.5 11.5 2.6 128 chr3L 10502021 intron A2bp1 + chr3L 10502085 intron A2bp1 + chr3L 10502149 intron A2bp1 + chr3L_32_10500001 chr3L_10500001 RAL-303_100b 2999 chr3L 10504320 10504343 chr3L 10504423 10504447 10 102 30.5 21.0 25.8 0.4 127 chr3L 10504320 intron A2bp1 + chr3L 10504384 intron A2bp1 + chr3L 10504447 intron A2bp1 + chr3L_10_10500001 chr3L_10500001 RAL-303_100b 3000 chr3L 10509459 10509481 chr3L 10509613 10509635 20 153 28.5 0.0 14.2 1.3 176 chr3L 10509459 intron A2bp1 + chr3L 10509547 intron A2bp1 + chr3L 10509635 intron A2bp1 + chr3L_20_10505001 chr3L_10505001 RAL-303_100b 3001 chr3L 10509482 10509506 chr3L 10509609 10509609 13 143 18.0 0.0 9.0 1.3 127 chr3L 10509482 intron A2bp1 + chr3L 10509546 intron A2bp1 + chr3L 10509609 intron A2bp1 + chr3L_13_10505001 chr3L_10505001 RAL-303_100b 3002 chr3L 10553474 10553479 chr3L 10553696 10553701 4 222 37.5 27.5 32.5 0.1 227 chr3L 10553474 intron A2bp1 + chr3L 10553588 intron A2bp1 + chr3L 10553701 intron A2bp1 + chr3L_4_10550001 chr3L_10550001 RAL-303_100b 3003 chr3L 10553482 10553520 chr3L 10553694 10553741 13 219 27.5 26.5 27.0 0.5 259 chr3L 10553482 intron A2bp1 + chr3L 10553612 intron A2bp1 + chr3L 10553741 intron A2bp1 + chr3L_13_10550001 chr3L_10550001 RAL-303_100b 3004 chr3L 10554540 10554586 chr3L 10554651 10554659 10 107 48.5 36.0 42.2 0.2 119 chr3L 10554540 intron A2bp1 + chr3L 10554600 intron A2bp1 + chr3L 10554659 intron A2bp1 + chr3L_10_10550001 chr3L_10550001 RAL-303_100b 3005 chr3L 10557945 10557956 chr3L 10558057 10558068 5 112 61.0 41.0 51.0 0.1 123 chr3L 10557945 intron,3` UTR A2bp1 +,CG6527 - chr3L 10558006 intron,3` UTR A2bp1 +,CG6527 - chr3L 10558068 intron,3` UTR A2bp1 +,CG6527 - chr3L_5_10555001 chr3L_10555001 RAL-303_100b 3006 chr3L 10557960 10557989 chr3L 10558051 10558092 17 105 44.0 39.5 41.8 0.4 132 chr3L 10557960 intron,3` UTR A2bp1 +,CG6527 - chr3L 10558026 intron,3` UTR A2bp1 +,CG6527 - chr3L 10558092 intron,3` UTR A2bp1 +,CG6527 - chr3L_17_10555001 chr3L_10555001 RAL-303_100b 3007 chr3L 10584254 10584301 chr3L 10584366 10584413 35 111 18.0 11.0 14.5 2.3 159 chr3L 10584254 intron A2bp1 + chr3L 10584334 intron A2bp1 + chr3L 10584413 intron A2bp1 + chr3L_35_10580001 chr3L_10580001 RAL-303_100b 3008 chr3L 10598809 10598821 chr3L 10598911 10598923 5 102 41.5 28.0 34.8 0.1 114 chr3L 10598809 intergenic not near genes chr3L 10598866 intergenic not near genes chr3L 10598923 intergenic not near genes chr3L_5_10595001 chr3L_10595001 RAL-303_100b 3009 chr3L 10600431 10600446 chr3L 10600538 10600545 13 105 28.0 7.0 17.5 0.7 114 chr3L 10600431 intergenic not near genes chr3L 10600488 intergenic not near genes chr3L 10600545 intergenic not near genes chr3L_13_10600001 chr3L_10600001 RAL-303_100b 3010 chr3L 10600456 10600477 chr3L 10600537 10600584 13 104 12.5 7.0 9.8 1.2 128 chr3L 10600456 intergenic not near genes chr3L 10600520 intergenic not near genes chr3L 10600584 intergenic not near genes chr3L_13_10600001 chr3L_10600001 RAL-303_100b 3011 chr3L 10603637 10603730 chr3L 10603869 10603945 20 214 0.0 4.0 2.0 6.7 308 chr3L 10603637 intergenic not near genes chr3L 10603791 intergenic not near genes chr3L 10603945 intergenic not near genes chr3L_20_10600001 chr3L_10600001 RAL-303_100b 3012 chr3L 10614744 10614796 chr3L 10614856 10614900 6 105 0.0 7.5 3.8 1.2 156 chr3L 10614744 intergenic not near genes chr3L 10614822 intergenic not near genes chr3L 10614900 intergenic not near genes chr3L_6_10610001 chr3L_10610001 RAL-303_100b 3013 chr3L 10621820 10621878 chr3L 10621932 10621990 38 111 3.0 10.0 6.5 5.1 170 chr3L 10621820 intergenic not near genes chr3L 10621905 intergenic not near genes chr3L 10621990 intergenic not near genes chr3L_38_10620001 chr3L_10620001 RAL-303_100b 3014 chr3L 10627420 10627444 chr3L 10627528 10627552 6 106 17.5 28.5 23.0 0.2 132 chr3L 10627420 3` UTR CG34238 + chr3L 10627486 intergenic CG34238 +,CG14151 - chr3L 10627552 intergenic CG34238 +,CG14151 - chr3L_6_10625001 chr3L_10625001 RAL-303_100b 3015 chr3L 10651377 10651440 chr3L 10651478 10651510 37 98 34.5 34.0 34.2 1.1 133 chr3L 10651377 intron CG32066 - chr3L 10651444 intron CG32066 - chr3L 10651510 intron CG32066 - chr3L_37_10650001 chr3L_10650001 RAL-303_100b 3016 chr3L 10678697 10678714 chr3L 10678801 10678818 6 104 2.5 6.0 4.2 1.2 121 chr3L 10678697 intron simj + chr3L 10678758 intron simj + chr3L 10678818 intron simj + chr3L_6_10675001 chr3L_10675001 RAL-303_100b 3017 chr3L 10694894 10694932 chr3L 10695011 10695049 18 117 32.5 37.0 34.8 0.5 155 chr3L 10694894 intron NijA - chr3L 10694972 intron NijA - chr3L 10695049 exon NijA - chr3L_18_10690001 chr3L_10690001 RAL-303_100b 3018 chr3L 10706535 10706540 chr3L 10706700 10706705 4 165 0.0 22.0 11.0 0.3 170 chr3L 10706535 intergenic not near genes chr3L 10706620 intergenic not near genes chr3L 10706705 intergenic not near genes chr3L_4_10705001 chr3L_10705001 RAL-303_100b 3019 chr3L 10714524 10714710 chr3L 10714626 10714805 13 101 3.0 0.0 1.5 5.2 281 chr3L 10714524 intergenic not near genes chr3L 10714664 intergenic not near genes chr3L 10714805 intergenic not near genes chr3L_13_10710001 chr3L_10710001 RAL-303_100b 3020 chr3L 10721972 10722011 chr3L 10722079 10722109 9 106 18.5 18.5 18.5 0.5 137 chr3L 10721972 intergenic not near genes chr3L 10722040 intergenic not near genes chr3L 10722109 intergenic not near genes chr3L_9_10720001 chr3L_10720001 RAL-303_100b 3021 chr3L 10735808 10735831 chr3L 10735922 10735945 17 114 11.0 16.0 13.5 1.2 137 chr3L 10735808 intergenic not near genes chr3L 10735876 intergenic not near genes chr3L 10735945 intergenic not near genes chr3L_17_10735001 chr3L_10735001 RAL-303_100b 3022 chr3L 10739787 10739804 chr3L 10739896 10739910 7 108 11.0 0.0 5.5 1.1 123 chr3L 10739787 intergenic not near genes chr3L 10739848 intergenic not near genes chr3L 10739910 intergenic not near genes chr3L_7_10735001 chr3L_10735001 RAL-303_100b 3023 chr3L 10752305 10752358 chr3L 10752407 10752460 18 101 38.0 40.5 39.2 0.4 155 chr3L 10752305 intergenic not near genes chr3L 10752382 intergenic not near genes chr3L 10752460 intergenic not near genes chr3L_18_10750001 chr3L_10750001 RAL-303_100b 3024 chr3L 10762806 10762862 chr3L 10762915 10762945 54 105 13.0 23.5 18.2 2.8 139 chr3L 10762806 intergenic not near genes chr3L 10762876 intergenic not near genes chr3L 10762945 intergenic not near genes chr3L_54_10760001 chr3L_10760001 RAL-303_100b 3025 chr3L 10778823 10778830 chr3L 10778910 10778931 9 95 0.0 33.0 16.5 0.5 108 chr3L 10778823 intergenic not near genes chr3L 10778877 intergenic not near genes chr3L 10778931 intergenic not near genes chr3L_9_10775001 chr3L_10775001 RAL-303_100b 3026 chr3L 10783656 10783706 chr3L 10783765 10783798 25 104 50.5 51.0 50.8 0.5 142 chr3L 10783656 intergenic not near genes chr3L 10783727 intergenic not near genes chr3L 10783798 intergenic not near genes chr3L_25_10780001 chr3L_10780001 RAL-303_100b 3027 chr3L 10795035 10795074 chr3L 10795140 10795158 20 104 30.0 28.5 29.2 0.7 123 chr3L 10795035 5` UTR CR44546 + chr3L 10795096 5` UTR CR44546 + chr3L 10795158 5` UTR CR44546 + chr3L_20_10795001 chr3L_10795001 RAL-303_100b 3028 chr3L 10820437 10820519 chr3L 10820650 10820693 9 197 0.5 0.0 0.2 7.5 256 chr3L 10820437 intergenic not near genes chr3L 10820565 intergenic not near genes chr3L 10820693 intergenic not near genes chr3L_9_10820001 chr3L_10820001 RAL-303_100b 3029 chr3L 10823561 10823584 chr3L 10824392 10824431 28 833 59.0 105.0 82.0 0.3 870 chr3L 10823561 intergenic not near genes chr3L 10823996 intergenic not near genes chr3L 10824431 intergenic not near genes chr3L_28_10820001 chr3L_10820001 RAL-303_100b 3030 chr3L 10887362 10887378 chr3L 10887466 10887482 13 104 2.0 27.5 14.8 0.8 120 chr3L 10887362 intergenic not near genes chr3L 10887422 intergenic not near genes chr3L 10887482 intergenic not near genes chr3L_13_10885001 chr3L_10885001 RAL-303_100b 3031 chr3L 10907957 10907994 chr3L 10908056 10908083 6 98 0.0 11.5 5.8 0.9 126 chr3L 10907957 intergenic not near genes chr3L 10908020 intergenic not near genes chr3L 10908083 intergenic not near genes chr3L_6_10905001 chr3L_10905001 RAL-303_100b 3032 chr3L 10910465 10910472 chr3L 10910734 10910741 5 269 52.0 45.5 48.8 0.1 276 chr3L 10910465 intergenic not near genes chr3L 10910603 intergenic not near genes chr3L 10910741 intergenic not near genes chr3L_5_10910001 chr3L_10910001 RAL-303_100b 3033 chr3L 10910473 10910519 chr3L 10910731 10910758 17 266 35.5 46.0 40.8 0.4 285 chr3L 10910473 intergenic not near genes chr3L 10910616 intergenic not near genes chr3L 10910758 intergenic not near genes chr3L_17_10910001 chr3L_10910001 RAL-303_100b 3034 chr3L 10912116 10912167 chr3L 10912242 10912293 25 125 31.0 37.5 34.2 0.7 177 chr3L 10912116 intergenic not near genes chr3L 10912204 intergenic not near genes chr3L 10912293 intergenic not near genes chr3L_25_10910001 chr3L_10910001 RAL-303_100b 3035 chr3L 10937824 10937874 chr3L 10937926 10937973 22 100 37.0 36.5 36.8 0.6 149 chr3L 10937824 intergenic not near genes chr3L 10937898 intergenic not near genes chr3L 10937973 intergenic not near genes chr3L_22_10935001 chr3L_10935001 RAL-303_100b 3036 chr3L 10942040 10942070 chr3L 10942147 10942178 5 104 39.5 34.0 36.8 0.1 138 chr3L 10942040 intergenic not near genes chr3L 10942109 intergenic not near genes chr3L 10942178 intergenic not near genes chr3L_5_10940001 chr3L_10940001 RAL-303_100b 3037 chr3L 10956363 10956469 chr3L 10956481 10956602 17 118 6.0 3.0 4.5 3.1 239 chr3L 10956363 intergenic not near genes chr3L 10956482 intergenic not near genes chr3L 10956602 intergenic not near genes chr3L_17_10955001 chr3L_10955001 RAL-303_100b 3038 chr3L 10958186 10958234 chr3L 10958293 10958341 22 106 29.5 19.0 24.2 0.9 155 chr3L 10958186 intergenic not near genes chr3L 10958264 intergenic not near genes chr3L 10958341 intergenic not near genes chr3L_22_10955001 chr3L_10955001 RAL-303_100b 3039 chr3L 10993098 10993105 chr3L 10993207 10993217 4 109 43.5 35.5 39.5 0.1 119 chr3L 10993098 intron klu - chr3L 10993158 intron klu - chr3L 10993217 intron klu - chr3L_4_10990001 chr3L_10990001 RAL-303_100b 3040 chr3L 10993107 10993140 chr3L 10993204 10993250 19 103 35.5 33.0 34.2 0.5 143 chr3L 10993107 intron klu - chr3L 10993178 intron klu - chr3L 10993250 intron klu - chr3L_19_10990001 chr3L_10990001 RAL-303_100b 3041 chr3L 11018541 11018568 chr3L 11018651 11018679 8 111 35.5 48.0 41.8 0.2 138 chr3L 11018541 intergenic not near genes chr3L 11018610 intergenic not near genes chr3L 11018679 intergenic not near genes chr3L_8_11015001 chr3L_11015001 RAL-303_100b 3042 chr3L 11053639 11053683 chr3L 11053749 11053787 18 106 0.0 15.5 7.8 2.0 148 chr3L 11053639 intergenic CG7888 + chr3L 11053713 intergenic CG7888 + chr3L 11053787 intergenic CG7888 + chr3L_18_11050001 chr3L_11050001 RAL-303_100b 3043 chr3L 11087036 11087090 chr3L 11088849 11088871 S-element 28 1810 11.5 15.5 13.5 1.9 1835 chr3L 11087036 intron JIL-1 - chr3L 11087954 intron JIL-1 - chr3L 11088871 intron JIL-1 - chr3L_28_11085001 chr3L_11085001 RAL-303_100b 3044 chr3L 11103227 11103247 chr3L 11108563 11108563 X-element 6 5334 44.5 40.0 42.2 0.1 5336 chr3L 11103227 intergenic CG32071 -,Elo68alpha - chr3L 11105895 intergenic not near genes chr3L 11108563 exon CG12522 + chr3L_6_11105001 chr3L_11105001 RAL-303_100b 3045 chr3L 11103251 11103273 chr3L 11108555 11108597 X-element 10 5330 40.5 39.0 39.8 0.2 5346 chr3L 11103251 intergenic CG32071 -,Elo68alpha - chr3L 11105924 intergenic not near genes chr3L 11108597 exon CG12522 + chr3L_10_11105001 chr3L_11105001 RAL-303_100b 3046 chr3L 11105278 11105326 chr3L 11107014 11107062 X-element 13 1734 4.5 9.5 7.0 1.6 1784 chr3L 11105278 intergenic not near genes chr3L 11106170 intergenic not near genes chr3L 11107062 exon CG32073 - chr3L_13_11105001 chr3L_11105001 RAL-303_100b 3047 chr3L 11127187 11127296 chr3L 11127287 11127402 10 98 29.5 32.5 31.0 0.3 215 chr3L 11127187 intron CG42575 + chr3L 11127294 intron CG42575 + chr3L 11127402 intron CG42575 + chr3L_10_11125001 chr3L_11125001 RAL-303_100b 3048 chr3L 11130713 11130768 chr3L 11130814 11130859 35 99 49.5 47.0 48.2 0.7 146 chr3L 11130713 intron CG42575 + chr3L 11130786 intron CG42575 + chr3L 11130859 intron,5` UTR CG42575 +,nol + chr3L_35_11130001 chr3L_11130001 RAL-303_100b 3049 chr3L 11131783 11131810 chr3L 11132072 11132092 18 287 35.0 46.5 40.8 0.4 309 chr3L 11131783 intron CG42575 + chr3L 11131938 intron,3` UTR CG42575 +,CG32074 - chr3L 11132092 intron,exon CG42575 +,CG32074 - chr3L_18_11130001 chr3L_11130001 RAL-303_100b 3050 chr3L 11134676 11134709 chr3L 11134778 11134811 9 102 38.5 39.0 38.8 0.2 135 chr3L 11134676 intergenic CG42575 +,CG14143 + chr3L 11134744 intergenic CG42575 +,CG14143 + chr3L 11134811 intergenic CG42575 +,CG14143 + chr3L_9_11130001 chr3L_11130001 RAL-303_100b 3051 chr3L 11135509 11135804 chr3L 11135764 11135914 35 146 38.5 38.0 38.2 0.9 405 chr3L 11135509 intergenic CG14143 + chr3L 11135712 intergenic CG14143 +,CG32082 + chr3L 11135914 intergenic CG32082 +,CG14143 + chr3L_35_11135001 chr3L_11135001 RAL-303_100b 3052 chr3L 11145535 11145556 chr3L 11145640 11145671 6 113 36.5 48.5 42.5 0.1 136 chr3L 11145535 intron CG32082 + chr3L 11145603 intron CG32082 + chr3L 11145671 intron CG32082 + chr3L_6_11145001 chr3L_11145001 RAL-303_100b 3053 chr3L 11154383 11154391 chr3L 11154489 11154493 7 105 41.5 0.5 21.0 0.3 110 chr3L 11154383 intron CG32082 + chr3L 11154438 intron CG32082 + chr3L 11154493 intron CG32082 + chr3L_7_11150001 chr3L_11150001 RAL-303_100b 3054 chr3L 11157707 11157763 chr3L 11157851 11157907 36 141 48.5 44.5 46.5 0.8 200 chr3L 11157707 intron CG32082 + chr3L 11157807 intron CG32082 + chr3L 11157907 intron CG32082 + chr3L_36_11155001 chr3L_11155001 RAL-303_100b 3055 chr3L 11186248 11186294 chr3L 11186347 11186393 18 99 17.0 21.0 19.0 0.9 145 chr3L 11186248 intron GlcAT-P - chr3L 11186320 intron GlcAT-P - chr3L 11186393 intron GlcAT-P - chr3L_18_11185001 chr3L_11185001 RAL-303_100b 3056 chr3L 11187704 11187740 chr3L 11187808 11187846 12 105 16.0 32.5 24.2 0.5 142 chr3L 11187704 intron GlcAT-P - chr3L 11187775 intron GlcAT-P - chr3L 11187846 intron GlcAT-P - chr3L_12_11185001 chr3L_11185001 RAL-303_100b 3057 chr3L 11224521 11224575 chr3L 11224668 11224721 36 144 6.5 12.0 9.2 3.5 200 chr3L 11224521 intron CG42671 + chr3L 11224621 intron CG42671 + chr3L 11224721 intron CG42671 + chr3L_36_11220001 chr3L_11220001 RAL-303_100b 3058 chr3L 11241753 11241792 chr3L 11241860 11241899 19 107 23.5 27.5 25.5 0.7 146 chr3L 11241753 intergenic not near genes chr3L 11241826 intergenic not near genes chr3L 11241899 intergenic not near genes chr3L_19_11240001 chr3L_11240001 RAL-303_100b 3059 chr3L 11264445 11264477 chr3L 11271415 11271454 17.6 41 6973 36.0 18.5 27.2 1.5 7009 chr3L 11264445 intergenic not near genes chr3L 11267950 intergenic not near genes chr3L 11271454 intergenic not near genes chr3L_41_11265001 chr3L_11265001 RAL-303_100b 3060 chr3L 11264478 11264493 chr3L 11271414 11271470 17.6 15 6965 25.5 18.0 21.8 0.7 6992 chr3L 11264478 intergenic not near genes chr3L 11267974 intergenic not near genes chr3L 11271470 intergenic not near genes chr3L_15_11265001 chr3L_11265001 RAL-303_100b 3061 chr3L 11289867 11289876 chr3L 11290238 11290242 6 374 14.5 59.0 36.8 0.2 375 chr3L 11289867 intron CG6175 - chr3L 11290054 intron CG6175 - chr3L 11290242 intron CG6175 - chr3L_6_11290001 chr3L_11290001 RAL-303_100b 3062 chr3L 11290601 11290654 chr3L 11290949 11291002 26 346 39.0 36.0 37.5 0.7 401 chr3L 11290601 intron CG6175 - chr3L 11290802 intron CG6175 - chr3L 11291002 intron CG6175 - chr3L_26_11290001 chr3L_11290001 RAL-303_100b 3063 chr3L 11301654 11301670 chr3L 11301802 11301818 7 147 37.0 38.5 37.8 0.2 164 chr3L 11301654 intergenic not near genes chr3L 11301736 intergenic not near genes chr3L 11301818 intergenic not near genes chr3L_7_11300001 chr3L_11300001 RAL-303_100b 3064 chr3L 11301671 11301709 chr3L 11301801 11301857 18 145 32.0 38.5 35.2 0.5 186 chr3L 11301671 intergenic not near genes chr3L 11301764 intergenic not near genes chr3L 11301857 intergenic not near genes chr3L_18_11300001 chr3L_11300001 RAL-303_100b 3065 chr3L 11303029 11303036 chr3L 11303140 11303147 8 111 16.5 0.0 8.2 0.9 118 chr3L 11303029 intergenic not near genes chr3L 11303088 intergenic not near genes chr3L 11303147 intergenic not near genes chr3L_8_11300001 chr3L_11300001 RAL-303_100b 3066 chr3L 11304813 11304832 chr3L 11304935 11304954 17 121 11.5 0.5 6.0 2.4 141 chr3L 11304813 intergenic not near genes chr3L 11304884 intergenic not near genes chr3L 11304954 intergenic not near genes chr3L_17_11300001 chr3L_11300001 RAL-303_100b 3067 chr3L 11314737 11314782 chr3L 11315973 11316013 14 1238 41.5 27.5 34.5 0.4 1276 chr3L 11314737 intergenic not near genes chr3L 11315375 5` UTR CR44361 + chr3L 11316013 5` UTR CR44361 + chr3L_14_11315001 chr3L_11315001 RAL-303_100b 3068 chr3L 11329666 11329698 chr3L 11332896 11332928 jockey 22 3227 32.0 13.0 22.5 0.9 3262 chr3L 11329666 intergenic not near genes chr3L 11331297 intergenic not near genes chr3L 11332928 intergenic not near genes chr3L_22_11330001 chr3L_11330001 RAL-303_100b 3069 chr3L 11329701 11329727 chr3L 11332894 11332942 jockey 16 3220 16.0 12.0 14.0 1.1 3241 chr3L 11329701 intergenic not near genes chr3L 11331322 intergenic not near genes chr3L 11332942 intergenic not near genes chr3L_16_11330001 chr3L_11330001 RAL-303_100b 3070 chr3L 11386075 11386085 chr3L 11386172 11386187 7 100 53.0 50.0 51.5 0.1 112 chr3L 11386075 intergenic not near genes chr3L 11386131 intergenic not near genes chr3L 11386187 intergenic not near genes chr3L_7_11385001 chr3L_11385001 RAL-303_100b 3071 chr3L 11389698 11389749 chr3L 11389809 11389833 15 106 26.5 20.0 23.2 0.6 135 chr3L 11389698 intergenic not near genes chr3L 11389766 intergenic not near genes chr3L 11389833 intergenic not near genes chr3L_15_11385001 chr3L_11385001 RAL-303_100b 3072 chr3L 11397568 11397595 chr3L 11397671 11397714 7 112 42.0 34.5 38.2 0.2 146 chr3L 11397568 exon CG44362 + chr3L 11397641 exon CG44362 + chr3L 11397714 exon CG44362 + chr3L_7_11395001 chr3L_11395001 RAL-303_100b 3073 chr3L 11442784 11442803 chr3L 11442894 11442894 4 105 14.0 0.0 7.0 0.5 110 chr3L 11442784 intergenic not near genes chr3L 11442839 intergenic not near genes chr3L 11442894 intergenic not near genes chr3L_4_11440001 chr3L_11440001 RAL-303_100b 3074 chr3L 11454141 11454183 chr3L 11454259 11454289 9 111 40.5 40.5 40.5 0.2 148 chr3L 11454141 intergenic not near genes chr3L 11454215 intergenic not near genes chr3L 11454289 intergenic not near genes chr3L_9_11450001 chr3L_11450001 RAL-303_100b 3075 chr3L 11456887 11456896 chr3L 11457010 11457012 6 120 49.0 31.0 40.0 0.1 125 chr3L 11456887 intergenic CG12289 - chr3L 11456950 intergenic CG12289 - chr3L 11457012 intergenic CG12289 - chr3L_6_11455001 chr3L_11455001 RAL-303_100b 3076 chr3L 11456897 11456914 chr3L 11457008 11457037 5 120 43.5 31.0 37.2 0.1 140 chr3L 11456897 intergenic CG12289 - chr3L 11456967 intergenic CG12289 - chr3L 11457037 intergenic CG12289 - chr3L_5_11455001 chr3L_11455001 RAL-303_100b 3077 chr3L 11493139 11493190 chr3L 11493238 11493297 19 103 36.0 35.5 35.8 0.5 158 chr3L 11493139 intron chrb + chr3L 11493218 intron chrb + chr3L 11493297 intron chrb + chr3L_19_11490001 chr3L_11490001 RAL-303_100b 3078 chr3L 11534807 11534858 chr3L 11534920 11534959 16 110 24.0 22.5 23.2 0.7 152 chr3L 11534807 intron Mob2 - chr3L 11534883 intron Mob2 - chr3L 11534959 intron Mob2 - chr3L_16_11530001 chr3L_11530001 RAL-303_100b 3079 chr3L 11548823 11548880 chr3L 11548935 11548992 30 109 51.5 50.5 51.0 0.6 169 chr3L 11548823 intron Mob2 - chr3L 11548908 intron Mob2 - chr3L 11548992 intron Mob2 - chr3L_30_11545001 chr3L_11545001 RAL-303_100b 3080 chr3L 11553703 11553758 chr3L 11553830 11553885 17 126 25.0 31.0 28.0 0.6 182 chr3L 11553703 intron Mob2 - chr3L 11553794 intron Mob2 - chr3L 11553885 intron Mob2 - chr3L_17_11550001 chr3L_11550001 RAL-303_100b 3081 chr3L 11564758 11564810 chr3L 11572408 11572429 412 14 7637 19.5 21.5 20.5 0.7 7671 chr3L 11564758 exon CG33267 + chr3L 11568594 intron CG33267 + chr3L 11572429 exon CG33267 + chr3L_14_11565001 chr3L_11565001 RAL-303_100b 3082 chr3L 11579530 11579585 chr3L 11579661 11579716 29 130 37.5 30.0 33.8 0.8 186 chr3L 11579530 intergenic CG43390 - chr3L 11579623 intergenic CG43390 - chr3L 11579716 intergenic CG43390 - chr3L_29_11575001 chr3L_11575001 RAL-303_100b 3083 chr3L 11587894 11587952 chr3L 11587995 11588053 30 99 36.5 36.5 36.5 0.8 159 chr3L 11587894 intergenic rt - chr3L 11587974 intergenic rt - chr3L 11588053 intergenic rt - chr3L_30_11585001 chr3L_11585001 RAL-303_100b 3084 chr3L 11588706 11588759 chr3L 11588887 11588940 27 180 50.0 51.5 50.8 0.5 234 chr3L 11588706 intergenic not near genes chr3L 11588823 intergenic not near genes chr3L 11588940 intergenic not near genes chr3L_27_11585001 chr3L_11585001 RAL-303_100b 3085 chr3L 11590243 11590271 chr3L 11590358 11590386 7 112 4.0 9.5 6.8 0.9 143 chr3L 11590243 intergenic CG7377 + chr3L 11590314 intergenic CG7377 + chr3L 11590386 intergenic CG7377 +,CG33268 - chr3L_7_11590001 chr3L_11590001 RAL-303_100b 3086 chr3L 11648488 11648520 chr3L 11648596 11648605 11 104 46.5 34.5 40.5 0.3 117 chr3L 11648488 intergenic RIOK1 -,CG7339 + chr3L 11648546 intergenic RIOK1 -,CG7339 + chr3L 11648605 intergenic RIOK1 -,CG7339 + chr3L_11_11645001 chr3L_11645001 RAL-303_100b 3087 chr3L 11656232 11656237 chr3L 11656340 11656345 4 108 37.0 0.5 18.8 0.2 113 chr3L 11656232 intron CG32085 - chr3L 11656288 intron CG32085 - chr3L 11656345 intron CG32085 - chr3L_4_11655001 chr3L_11655001 RAL-303_100b 3088 chr3L 11656238 11656276 chr3L 11656335 11656384 8 104 15.5 0.5 8.0 0.9 146 chr3L 11656238 intron CG32085 - chr3L 11656311 intron CG32085 - chr3L 11656384 intron CG32085 - chr3L_8_11655001 chr3L_11655001 RAL-303_100b 3089 chr3L 11663737 11663758 chr3L 11663883 11663903 9 149 45.5 38.5 42.0 0.2 166 chr3L 11663737 intron CG32085 - chr3L 11663820 intron CG32085 - chr3L 11663903 intron CG32085 - chr3L_9_11660001 chr3L_11660001 RAL-303_100b 3090 chr3L 11672219 11672222 chr3L 11672337 11672340 8 118 0.0 55.5 27.8 0.3 121 chr3L 11672219 intron CG32085 - chr3L 11672280 intron CG32085 - chr3L 11672340 intron CG32085 - chr3L_8_11670001 chr3L_11670001 RAL-303_100b 3091 chr3L 11678073 11678125 chr3L 11678185 11678237 26 108 9.0 13.5 11.2 2.1 164 chr3L 11678073 intron CG32085 - chr3L 11678155 intron CG32085 - chr3L 11678237 intron CG32085 - chr3L_26_11675001 chr3L_11675001 RAL-303_100b 3092 chr3L 11711724 11711773 chr3L 11711843 11711865 4 112 36.0 36.0 36.0 0.1 141 chr3L 11711724 intergenic crim - chr3L 11711794 intergenic crim -,CG14132 - chr3L 11711865 intergenic CG14132 -,crim - chr3L_4_11710001 chr3L_11710001 RAL-303_100b 3093 chr3L 11723061 11723097 chr3L 11727881 11727917 Doc 40 4819 26.0 16.5 21.2 1.8 4856 chr3L 11723061 3` UTR Bmcp + chr3L 11725489 intron Bmcp + chr3L 11727917 3` UTR Bmcp + chr3L_40_11725001 chr3L_11725001 RAL-303_100b 3094 chr3L 11723098 11723115 chr3L 11727877 11727935 Doc 22 4815 14.0 14.0 14.0 1.5 4837 chr3L 11723098 3` UTR Bmcp + chr3L 11725516 intron Bmcp + chr3L 11727935 3` UTR Bmcp + chr3L_22_11725001 chr3L_11725001 RAL-303_100b 3095 chr3L 11729651 11729704 chr3L 11729752 11729795 17 97 39.0 33.5 36.2 0.5 144 chr3L 11729651 exon CG32088 + chr3L 11729723 intron CG32088 + chr3L 11729795 exon CG32088 + chr3L_17_11725001 chr3L_11725001 RAL-303_100b 3096 chr3L 11740115 11740130 chr3L 11740238 11740253 6 122 51.0 44.5 47.8 0.1 138 chr3L 11740115 intron CG6024 - chr3L 11740184 intron CG6024 - chr3L 11740253 intron CG6024 - chr3L_6_11740001 chr3L_11740001 RAL-303_100b 3097 chr3L 11740133 11740154 chr3L 11740230 11740275 15 118 44.5 43.5 44.0 0.3 142 chr3L 11740133 intron CG6024 - chr3L 11740204 intron CG6024 - chr3L 11740275 intron CG6024 - chr3L_15_11740001 chr3L_11740001 RAL-303_100b 3098 chr3L 11743992 11744014 chr3L 11744125 11744147 27 132 40.5 11.5 26.0 1.0 155 chr3L 11743992 exon CG6024 - chr3L 11744070 intron CG6024 - chr3L 11744147 intron CG6024 - chr3L_27_11740001 chr3L_11740001 RAL-303_100b 3099 chr3L 11744017 11744046 chr3L 11744123 11744179 9 124 17.5 10.5 14.0 0.6 162 chr3L 11744017 exon CG6024 - chr3L 11744098 intron CG6024 - chr3L 11744179 intron CG6024 - chr3L_9_11740001 chr3L_11740001 RAL-303_100b 3100 chr3L 11757893 11757933 chr3L 11758015 11758055 18 122 15.0 0.0 7.5 2.1 162 chr3L 11757893 intron CG6024 - chr3L 11757974 intron CG6024 - chr3L 11758055 intron CG6024 - chr3L_18_11755001 chr3L_11755001 RAL-303_100b 3101 chr3L 802565 802566 chr3L 11777678 11777678 15 10975113 54.0 77.5 65.8 0.2 10975113 chr3L 802565 intergenic not near genes chr3L 6290122 intergenic not near genes chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_15_6290001 chr3L_6290001 RAL-303_100b 3102 chr3L 7749471 7749471 chr3L 11777678 11777678 15 4028207 57.5 77.5 67.5 0.2 4028207 chr3L 7749471 intron,3` UTR CG32373 +,CG13685 + chr3L 9763574 5` UTR CG8177 + chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_15_9760001 chr3L_9760001 RAL-303_100b 3103 chr3L 9313026 9313027 chr3L 11777678 11777678 9 2464652 39.0 77.5 58.2 0.2 2464652 chr3L 9313026 intergenic not near genes chr3L 10545352 intron A2bp1 + chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_9_10545001 chr3L_10545001 RAL-303_100b 3104 chr3L 11777678 11777678 chr3L 12163305 12163305 15 385627 76.5 71.5 74.0 0.2 385627 chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L 11970492 exon Muc68E - chr3L 12163305 intron CG9760 - chr3L_15_11970001 chr3L_11970001 RAL-303_100b 3105 chr3L 11810537 11810555 chr3L 11810640 11810658 18 103 2.5 21.5 12.0 1.4 121 chr3L 11810537 intron CG42255 - chr3L 11810598 intron CG42255 - chr3L 11810658 exon CG42255 - chr3L_18_11810001 chr3L_11810001 RAL-303_100b 3106 chr3L 11816778 11816792 chr3L 11816904 11816918 12 125 32.5 29.5 31.0 0.4 140 chr3L 11816778 3` UTR CG5946 - chr3L 11816848 3` UTR CG5946 - chr3L 11816918 3` UTR CG5946 - chr3L_12_11815001 chr3L_11815001 RAL-303_100b 3107 chr3L 11816793 11816802 chr3L 11816903 11816928 11 123 27.5 28.5 28.0 0.4 135 chr3L 11816793 3` UTR CG5946 - chr3L 11816860 3` UTR CG5946 - chr3L 11816928 3` UTR CG5946 - chr3L_11_11815001 chr3L_11815001 RAL-303_100b 3108 chr3L 11816805 11816816 chr3L 11816889 11816937 12 120 19.0 21.5 20.2 0.6 132 chr3L 11816805 3` UTR CG5946 - chr3L 11816871 3` UTR CG5946 - chr3L 11816937 3` UTR CG5946 - chr3L_12_11815001 chr3L_11815001 RAL-303_100b 3109 chr3L 11864528 11864585 chr3L 11865848 11865905 pogo 68 1317 12.5 18.5 15.5 4.1 1377 chr3L 11864528 intron CG44837 - chr3L 11865216 intron CG44837 - chr3L 11865905 intron CG44837 - chr3L_68_11865001 chr3L_11865001 RAL-303_100b 3110 chr3L 11872631 11872689 chr3L 11872998 11873056 39 365 15.0 11.5 13.2 2.7 425 chr3L 11872631 intron CG44837 - chr3L 11872844 intron CG44837 - chr3L 11873056 intron CG44837 - chr3L_39_11870001 chr3L_11870001 RAL-303_100b 3111 chr3L 11887233 11887288 chr3L 11887355 11887419 22 119 8.5 0.0 4.2 4.2 186 chr3L 11887233 intron CG44837 - chr3L 11887326 intron,3` UTR CG44837 -,CG5897 - chr3L 11887419 intron,3` UTR CG44837 -,CG5897 - chr3L_22_11885001 chr3L_11885001 RAL-303_100b 3112 chr3L 11897124 11897181 chr3L 11897384 11897441 48 255 13.0 11.5 12.2 3.6 317 chr3L 11897124 intron CG44837 - chr3L 11897282 intron CG44837 - chr3L 11897441 intron CG44837 - chr3L_48_11895001 chr3L_11895001 RAL-303_100b 3113 chr3L 12013888 12013937 chr3L 12014004 12014047 55 114 12.5 14.5 13.5 3.8 159 chr3L 12013888 intron rols - chr3L 12013968 intron rols - chr3L 12014047 intron rols - chr3L_55_12010001 chr3L_12010001 RAL-303_100b 3114 chr3L 12052678 12052738 chr3L 12052792 12052843 52 111 16.5 15.0 15.8 3.1 165 chr3L 12052678 intron rols - chr3L 12052760 intron rols - chr3L 12052843 intron rols - chr3L_52_12050001 chr3L_12050001 RAL-303_100b 3115 chr3L 12075399 12075458 chr3L 12075513 12075565 49 110 10.0 0.5 5.2 7.9 166 chr3L 12075399 intron Sema-5c - chr3L 12075482 intron Sema-5c - chr3L 12075565 intron Sema-5c - chr3L_49_12075001 chr3L_12075001 RAL-303_100b 3116 chr3L 12076391 12076396 chr3L 12076506 12076511 5 115 27.0 0.5 13.8 0.3 120 chr3L 12076391 intron Sema-5c - chr3L 12076451 intron Sema-5c - chr3L 12076511 intron Sema-5c - chr3L_5_12075001 chr3L_12075001 RAL-303_100b 3117 chr3L 12089071 12089098 chr3L 12089176 12089203 24 105 22.5 15.5 19.0 1.2 132 chr3L 12089071 exon CG17154 + chr3L 12089137 3` UTR CG17154 + chr3L 12089203 3` UTR CG17154 + chr3L_24_12085001 chr3L_12085001 RAL-303_100b 3118 chr3L 12089099 12089112 chr3L 12089175 12089217 14 102 14.0 15.5 14.8 0.9 118 chr3L 12089099 3` UTR CG17154 + chr3L 12089158 3` UTR CG17154 + chr3L 12089217 3` UTR CG17154 + chr3L_14_12085001 chr3L_12085001 RAL-303_100b 3119 chr3L 12114050 12114088 chr3L 12114161 12114199 34 108 19.5 15.5 17.5 1.8 149 chr3L 12114050 intergenic not near genes chr3L 12114124 intergenic not near genes chr3L 12114199 intergenic not near genes chr3L_34_12110001 chr3L_12110001 RAL-303_100b 3120 chr3L 12220288 12220309 chr3L 12220396 12220397 10 104 16.5 23.0 19.8 0.5 109 chr3L 12220288 5` UTR app - chr3L 12220342 5` UTR app - chr3L 12220397 5` UTR app - chr3L_10_12220001 chr3L_12220001 RAL-303_100b 3121 chr3L 12223433 12223444 chr3L 12223537 12223547 4 102 20.0 34.0 27.0 0.1 114 chr3L 12223433 intron app - chr3L 12223490 intron app - chr3L 12223547 intron app - chr3L_4_12220001 chr3L_12220001 RAL-303_100b 3122 chr3L 12225701 12225704 chr3L 12225818 12225821 4 117 9.0 54.5 31.8 0.1 120 chr3L 12225701 intron app - chr3L 12225761 intron app - chr3L 12225821 intron app - chr3L_4_12225001 chr3L_12225001 RAL-303_100b 3123 chr3L 12251546 12251546 chr3L 16182224 16182259 4 3930696 69.0 26.5 47.8 0.1 3930713 chr3L 12251546 intron app - chr3L 14216902 intron nuf + chr3L 16182259 intergenic not near genes chr3L_4_14215001 chr3L_14215001 RAL-303_100b 3124 chr3L 12290223 12290231 chr3L 12290338 12290346 7 115 20.0 0.0 10.0 0.6 123 chr3L 12290223 intergenic CR45658 - chr3L 12290284 intergenic CR45658 - chr3L 12290346 intergenic CR45658 - chr3L_7_12290001 chr3L_12290001 RAL-303_100b 3125 chr3L 12304065 12304118 chr3L 12304166 12304218 56 98 16.0 16.0 16.0 3.3 153 chr3L 12304065 intergenic not near genes chr3L 12304142 intergenic not near genes chr3L 12304218 intergenic not near genes chr3L_56_12300001 chr3L_12300001 RAL-303_100b 3126 chr3L 12335359 12335415 chr3L 12335463 12335519 25 90 30.0 14.5 22.2 1.1 160 chr3L 12335359 exon CG32105 + chr3L 12335439 3` UTR CG32105 + chr3L 12335519 3` UTR CG32105 + chr3L_25_12335001 chr3L_12335001 RAL-303_100b 3127 chr3L 12364148 12364175 chr3L 12364311 12364338 21 162 4.0 10.0 7.0 2.6 190 chr3L 12364148 intergenic not near genes chr3L 12364243 intergenic not near genes chr3L 12364338 intergenic not near genes chr3L_21_12360001 chr3L_12360001 RAL-303_100b 3128 chr3L 12369512 12369533 chr3L 12369626 12369628 21 114 19.0 11.0 15.0 1.3 116 chr3L 12369512 intron Ncc69 - chr3L 12369570 intron Ncc69 - chr3L 12369628 intron Ncc69 - chr3L_21_12365001 chr3L_12365001 RAL-303_100b 3129 chr3L 12369535 12369569 chr3L 12369625 12369684 30 113 7.5 10.5 9.0 3.0 149 chr3L 12369535 intron Ncc69 - chr3L 12369610 intron Ncc69 - chr3L 12369684 intron Ncc69 - chr3L_30_12365001 chr3L_12365001 RAL-303_100b 3130 chr3L 12381515 12381532 chr3L 12381618 12381635 10 103 3.5 0.0 1.8 3.6 120 chr3L 12381515 intron Ncc69 - chr3L 12381575 intron Ncc69 - chr3L 12381635 intron Ncc69 - chr3L_10_12380001 chr3L_12380001 RAL-303_100b 3131 chr3L 12458498 12458504 chr3L 12458599 12458628 4 118 7.0 6.5 6.8 0.5 130 chr3L 12458498 intergenic not near genes chr3L 12458563 intergenic not near genes chr3L 12458628 intergenic not near genes chr3L_4_12455001 chr3L_12455001 RAL-303_100b 3132 chr3L 12460314 12460315 chr3L 12460416 12460417 5 102 0.5 24.5 12.5 0.4 103 chr3L 12460314 intergenic not near genes chr3L 12460366 intergenic not near genes chr3L 12460417 intergenic not near genes chr3L_5_12460001 chr3L_12460001 RAL-303_100b 3133 chr3L 12460316 12460343 chr3L 12460408 12460445 7 99 0.5 23.0 11.8 0.5 129 chr3L 12460316 intergenic not near genes chr3L 12460380 intergenic not near genes chr3L 12460445 intergenic not near genes chr3L_7_12460001 chr3L_12460001 RAL-303_100b 3134 chr3L 12485404 12485408 chr3L 12485510 12485514 5 106 0.0 30.0 15.0 0.3 110 chr3L 12485404 intron CG33725 + chr3L 12485459 intron CG33725 + chr3L 12485514 intron CG33725 + chr3L_5_12485001 chr3L_12485001 RAL-303_100b 3135 chr3L 12485412 12485414 chr3L 12485503 12485520 4 102 0.0 24.5 12.2 0.3 108 chr3L 12485412 intron CG33725 + chr3L 12485466 intron CG33725 + chr3L 12485520 intron CG33725 + chr3L_4_12485001 chr3L_12485001 RAL-303_100b 3136 chr3L 12491679 12491735 chr3L 12491787 12491843 15 106 0.0 14.0 7.0 1.9 164 chr3L 12491679 intergenic CG10657 -,CR45682 +,CR45681 + chr3L 12491761 intergenic CG10657 -,CR45682 + chr3L 12491843 3` UTR,5` UTR CG10657 -,CR45682 + chr3L_15_12490001 chr3L_12490001 RAL-303_100b 3137 chr3L 12578052 12578081 chr3L 12578148 12578193 13 111 5.0 0.5 2.8 3.4 141 chr3L 12578052 intergenic not near genes chr3L 12578122 intergenic not near genes chr3L 12578193 intergenic not near genes chr3L_13_12575001 chr3L_12575001 RAL-303_100b 3138 chr3L 12587334 12587383 chr3L 12587442 12587479 9 106 6.0 0.0 3.0 2.2 145 chr3L 12587334 intron ara + chr3L 12587406 intron ara + chr3L 12587479 intron ara + chr3L_9_12585001 chr3L_12585001 RAL-303_100b 3139 chr3L 12610969 12611028 chr3L 12611240 12611299 44 270 2.0 12.0 7.0 5.5 330 chr3L 12610969 intron caup + chr3L 12611134 intron caup + chr3L 12611299 intron caup + chr3L_44_12610001 chr3L_12610001 RAL-303_100b 3140 chr3L 12612554 12612577 chr3L 12612672 12612695 23 117 28.5 13.0 20.8 1.1 141 chr3L 12612554 intron caup + chr3L 12612624 intron caup + chr3L 12612695 intron caup + chr3L_23_12610001 chr3L_12610001 RAL-303_100b 3141 chr3L 12612578 12612585 chr3L 12612671 12612703 8 112 20.5 13.0 16.8 0.4 125 chr3L 12612578 intron caup + chr3L 12612640 intron caup + chr3L 12612703 intron caup + chr3L_8_12610001 chr3L_12610001 RAL-303_100b 3142 chr3L 12612586 12612611 chr3L 12612669 12612729 31 115 8.5 12.0 10.2 2.8 143 chr3L 12612586 intron caup + chr3L 12612658 intron caup + chr3L 12612729 intron caup + chr3L_31_12610001 chr3L_12610001 RAL-303_100b 3143 chr3L 12614579 12614597 chr3L 12614742 12614759 10 163 0.0 18.0 9.0 1.0 180 chr3L 12614579 intron caup + chr3L 12614669 intron caup + chr3L 12614759 intron caup + chr3L_10_12610001 chr3L_12610001 RAL-303_100b 3144 chr3L 12626129 12626142 chr3L 12626263 12626276 15 132 20.5 0.5 10.5 1.3 147 chr3L 12626129 intergenic not near genes chr3L 12626202 intergenic not near genes chr3L 12626276 intergenic not near genes chr3L_15_12625001 chr3L_12625001 RAL-303_100b 3145 chr3L 12626143 12626166 chr3L 12626261 12626300 26 131 16.5 0.5 8.5 2.7 157 chr3L 12626143 intergenic not near genes chr3L 12626222 intergenic not near genes chr3L 12626300 intergenic not near genes chr3L_26_12625001 chr3L_12625001 RAL-303_100b 3146 chr3L 12647923 12647971 chr3L 12648024 12648062 30 99 14.0 8.0 11.0 2.5 139 chr3L 12647923 5` UTR CR32111 + chr3L 12647992 5` UTR CR32111 + chr3L 12648062 5` UTR CR32111 + chr3L_30_12645001 chr3L_12645001 RAL-303_100b 3147 chr3L 12706619 12706656 chr3L 12706771 12706808 31 152 17.0 18.0 17.5 1.7 189 chr3L 12706619 intron mirr + chr3L 12706714 intron mirr + chr3L 12706808 intron mirr + chr3L_31_12705001 chr3L_12705001 RAL-303_100b 3148 chr3L 12720300 12720357 chr3L 12720410 12720467 59 108 15.5 17.0 16.2 3.4 167 chr3L 12720300 intergenic not near genes chr3L 12720384 intergenic not near genes chr3L 12720467 intergenic not near genes chr3L_59_12720001 chr3L_12720001 RAL-303_100b 3149 chr3L 12722271 12722310 chr3L 12722378 12722417 8 107 0.0 21.0 10.5 0.7 146 chr3L 12722271 intergenic not near genes chr3L 12722344 intergenic not near genes chr3L 12722417 intergenic not near genes chr3L_8_12720001 chr3L_12720001 RAL-303_100b 3150 chr3L 12728010 12728043 chr3L 12728119 12728152 12 109 5.0 13.5 9.2 1.2 142 chr3L 12728010 intergenic not near genes chr3L 12728081 intergenic not near genes chr3L 12728152 intergenic not near genes chr3L_12_12725001 chr3L_12725001 RAL-303_100b 3151 chr3L 12792113 12792167 chr3L 12792238 12792291 25 124 8.5 11.0 9.8 2.3 178 chr3L 12792113 intron,intron Atg1 -,CG42709 + chr3L 12792202 intron,intron Atg1 -,CG42709 + chr3L 12792291 intron,intron Atg1 -,CG42709 + chr3L_25_12790001 chr3L_12790001 RAL-303_100b 3152 chr3L 12799814 12799825 chr3L 12799947 12799958 17 133 23.5 28.5 26.0 0.6 144 chr3L 12799814 intron Atg1 - chr3L 12799886 intron Atg1 - chr3L 12799958 intron Atg1 - chr3L_17_12795001 chr3L_12795001 RAL-303_100b 3153 chr3L 12799826 12799833 chr3L 12799942 12799966 7 129 20.0 26.0 23.0 0.3 140 chr3L 12799826 intron Atg1 - chr3L 12799896 intron Atg1 - chr3L 12799966 intron Atg1 - chr3L_7_12795001 chr3L_12795001 RAL-303_100b 3154 chr3L 12801953 12802013 chr3L 12802054 12802076 67 98 8.5 13.5 11.0 5.6 123 chr3L 12801953 intron Atg1 - chr3L 12802014 intron Atg1 - chr3L 12802076 intron Atg1 - chr3L_67_12800001 chr3L_12800001 RAL-303_100b 3155 chr3L 12857969 12858005 chr3L 12858089 12858125 34 119 14.5 8.5 11.5 2.7 156 chr3L 12857969 3` UTR CG32107 - chr3L 12858047 3` UTR CG32107 - chr3L 12858125 3` UTR CG32107 - chr3L_34_12855001 chr3L_12855001 RAL-303_100b 3156 chr3L 12868004 12868057 chr3L 12868115 12868165 41 108 13.0 13.5 13.2 2.9 161 chr3L 12868004 intergenic not near genes chr3L 12868084 intergenic not near genes chr3L 12868165 intergenic not near genes chr3L_41_12865001 chr3L_12865001 RAL-303_100b 3157 chr3L 12874908 12874956 chr3L 12877225 12877273 jockey 51 2317 14.0 17.0 15.5 3.1 2365 chr3L 12874908 intergenic not near genes chr3L 12876090 intergenic not near genes chr3L 12877273 intergenic not near genes chr3L_51_12875001 chr3L_12875001 RAL-303_100b 3158 chr3L 12894781 12894816 chr3L 12894884 12894916 15 100 34.0 34.5 34.2 0.4 135 chr3L 12894781 intergenic CG14118 + chr3L 12894848 intergenic CG14118 + chr3L 12894916 intergenic CG14118 + chr3L_15_12890001 chr3L_12890001 RAL-303_100b 3159 chr3L 12896209 12896259 chr3L 12896312 12896323 16 98 21.0 9.0 15.0 1.0 114 chr3L 12896209 intergenic not near genes chr3L 12896266 intergenic not near genes chr3L 12896323 intergenic not near genes chr3L_16_12895001 chr3L_12895001 RAL-303_100b 3160 chr3L 12919252 12919298 chr3L 12924761 12924775 Rt1c 19 5504 22.5 9.5 16.0 1.1 5523 chr3L 12919252 intergenic not near genes chr3L 12922014 intergenic not near genes chr3L 12924775 intergenic not near genes chr3L_19_12920001 chr3L_12920001 RAL-303_100b 3161 chr3L 12943850 12943868 chr3L 12943966 12943984 10 116 13.5 0.0 6.8 1.3 134 chr3L 12943850 intergenic not near genes chr3L 12943917 intergenic not near genes chr3L 12943984 intergenic not near genes chr3L_10_12940001 chr3L_12940001 RAL-303_100b 3162 chr3L 12957759 12957816 chr3L 12962266 12962278 copia 38 4503 15.0 20.5 17.8 2.0 4519 chr3L 12957759 intergenic not near genes chr3L 12960018 intergenic not near genes chr3L 12962278 intergenic not near genes chr3L_38_12960001 chr3L_12960001 RAL-303_100b 3163 chr3L 12978293 12978344 chr3L 12978415 12978466 46 119 13.5 5.0 9.2 4.5 173 chr3L 12978293 intergenic not near genes chr3L 12978380 intergenic not near genes chr3L 12978466 intergenic not near genes chr3L_46_12975001 chr3L_12975001 RAL-303_100b 3164 chr3L 12979876 12979927 chr3L 12979980 12980037 53 99 16.0 11.0 13.5 3.7 161 chr3L 12979876 intergenic not near genes chr3L 12979956 intergenic not near genes chr3L 12980037 intergenic not near genes chr3L_53_12975001 chr3L_12975001 RAL-303_100b 3165 chr3L 12994571 12994587 chr3L 12994686 12994702 4 115 21.5 14.5 18.0 0.2 131 chr3L 12994571 intergenic not near genes chr3L 12994636 intergenic CG11262 + chr3L 12994702 intergenic CG11262 + chr3L_4_12990001 chr3L_12990001 RAL-303_100b 3166 chr3L 13007667 13007721 chr3L 13007771 13007825 65 101 12.0 6.5 9.2 6.4 158 chr3L 13007667 exon CG11263 + chr3L 13007746 3` UTR CG11263 + chr3L 13007825 3` UTR CG11263 + chr3L_65_13005001 chr3L_13005001 RAL-303_100b 3167 chr3L 13017893 13017918 chr3L 13018000 13018025 24 107 5.0 17.0 11.0 2.0 132 chr3L 13017893 intergenic mRpL20 -,ste14 +,CR45445 - chr3L 13017959 intergenic mRpL20 -,ste14 +,CR45445 - chr3L 13018025 intergenic mRpL20 -,ste14 +,CR45445 - chr3L_24_13015001 chr3L_13015001 RAL-303_100b 3168 chr3L 13029504 13029554 chr3L 13029610 13029639 53 101 12.5 10.0 11.2 4.3 135 chr3L 13029504 intron CG17672 + chr3L 13029572 intron CG17672 + chr3L 13029639 intron CG17672 + chr3L_53_13025001 chr3L_13025001 RAL-303_100b 3169 chr3L 13050541 13050550 chr3L 13050645 13050654 8 104 31.5 16.0 23.8 0.3 113 chr3L 13050541 intergenic not near genes chr3L 13050598 intergenic not near genes chr3L 13050654 intergenic not near genes chr3L_8_13050001 chr3L_13050001 RAL-303_100b 3170 chr3L 13050551 13050578 chr3L 13050644 13050682 30 102 21.0 15.5 18.2 1.6 131 chr3L 13050551 intergenic not near genes chr3L 13050616 intergenic not near genes chr3L 13050682 intergenic not near genes chr3L_30_13050001 chr3L_13050001 RAL-303_100b 3171 chr3L 13050579 13050592 chr3L 13050642 13050684 15 99 15.5 15.0 15.2 0.9 105 chr3L 13050579 intergenic not near genes chr3L 13050632 intergenic not near genes chr3L 13050684 intergenic not near genes chr3L_15_13050001 chr3L_13050001 RAL-303_100b 3172 chr3L 13069533 13069587 chr3L 13069637 13069691 51 102 12.5 12.5 12.5 3.8 158 chr3L 13069533 intergenic not near genes chr3L 13069612 intergenic not near genes chr3L 13069691 intergenic not near genes chr3L_51_13065001 chr3L_13065001 RAL-303_100b 3173 chr3L 13123601 13123651 chr3L 13123702 13123752 23 97 22.0 8.0 15.0 1.4 151 chr3L 13123601 intergenic not near genes chr3L 13123676 intergenic not near genes chr3L 13123752 intergenic not near genes chr3L_23_13120001 chr3L_13120001 RAL-303_100b 3174 chr3L 13137629 13137684 chr3L 13137735 13137776 57 105 17.5 17.5 17.5 3.1 147 chr3L 13137629 intergenic not near genes chr3L 13137702 intergenic not near genes chr3L 13137776 intergenic not near genes chr3L_57_13135001 chr3L_13135001 RAL-303_100b 3175 chr3L 13182428 13182430 chr3L 13182530 13182533 4 103 35.5 8.5 22.0 0.2 105 chr3L 13182428 intergenic not near genes chr3L 13182480 intergenic not near genes chr3L 13182533 intergenic not near genes chr3L_4_13180001 chr3L_13180001 RAL-303_100b 3176 chr3L 13182431 13182472 chr3L 13182529 13182575 19 101 14.0 8.0 11.0 1.6 144 chr3L 13182431 intergenic not near genes chr3L 13182503 intergenic not near genes chr3L 13182575 intergenic not near genes chr3L_19_13180001 chr3L_13180001 RAL-303_100b 3177 chr3L 13197076 13197117 chr3L 13197225 13197259 24 145 0.0 21.0 10.5 2.1 183 chr3L 13197076 intergenic not near genes chr3L 13197168 intergenic not near genes chr3L 13197259 intergenic not near genes chr3L_24_13195001 chr3L_13195001 RAL-303_100b 3178 chr3L 13200595 13200615 chr3L 13200702 13200722 INE-1 18 106 10.0 27.5 18.8 0.9 127 chr3L 13200595 intergenic not near genes chr3L 13200658 intergenic not near genes chr3L 13200722 intergenic not near genes chr3L_18_13200001 chr3L_13200001 RAL-303_100b 3179 chr3L 13205216 13205246 chr3L 13205327 13205357 24 110 32.0 24.5 28.2 0.8 141 chr3L 13205216 intergenic not near genes chr3L 13205286 intergenic not near genes chr3L 13205357 intergenic not near genes chr3L_24_13205001 chr3L_13205001 RAL-303_100b 3180 chr3L 13205247 13205272 chr3L 13205322 13205341 30 107 16.5 20.0 18.2 1.6 94 chr3L 13205247 intergenic not near genes chr3L 13205294 intergenic not near genes chr3L 13205341 intergenic not near genes chr3L_30_13205001 chr3L_13205001 RAL-303_100b 3181 chr3L 13245071 13245124 chr3L 13245228 13245250 22 153 14.0 15.0 14.5 1.4 179 chr3L 13245071 intron caps + chr3L 13245160 intron caps + chr3L 13245250 intron caps + chr3L_22_13245001 chr3L_13245001 RAL-303_100b 3182 chr3L 13264766 13264793 chr3L 13264867 13264879 10 99 20.0 6.5 13.2 0.7 113 chr3L 13264766 intron caps + chr3L 13264822 intron caps + chr3L 13264879 intron caps + chr3L_10_13260001 chr3L_13260001 RAL-303_100b 3183 chr3L 13305496 13305539 chr3L 13305623 13305667 17 128 4.0 8.5 6.2 2.4 171 chr3L 13305496 intergenic not near genes chr3L 13305582 intergenic not near genes chr3L 13305667 intergenic not near genes chr3L_17_13305001 chr3L_13305001 RAL-303_100b 3184 chr3L 13311768 13311821 chr3L 13311871 13311924 42 102 10.0 15.5 12.8 3.0 156 chr3L 13311768 intergenic not near genes chr3L 13311846 intergenic not near genes chr3L 13311924 intergenic not near genes chr3L_42_13310001 chr3L_13310001 RAL-303_100b 3185 chr3L 13314575 13314612 chr3L 13314683 13314720 37 107 11.5 16.0 13.8 2.5 145 chr3L 13314575 intergenic not near genes chr3L 13314648 intergenic not near genes chr3L 13314720 intergenic not near genes chr3L_37_13310001 chr3L_13310001 RAL-303_100b 3186 chr3L 13320585 13320637 chr3L 13320698 13320745 61 109 14.5 14.0 14.2 4.0 160 chr3L 13320585 intergenic not near genes chr3L 13320665 intergenic not near genes chr3L 13320745 intergenic not near genes chr3L_61_13320001 chr3L_13320001 RAL-303_100b 3187 chr3L 13330806 13330850 chr3L 13330925 13330964 28 119 0.5 0.0 0.2 23.3 158 chr3L 13330806 intergenic not near genes chr3L 13330885 intergenic not near genes chr3L 13330964 intergenic not near genes chr3L_28_13330001 chr3L_13330001 RAL-303_100b 3188 chr3L 13337143 13337158 chr3L 13337259 13337274 18 115 0.0 15.5 7.8 2.0 131 chr3L 13337143 intergenic not near genes chr3L 13337208 intergenic not near genes chr3L 13337274 intergenic not near genes chr3L_18_13335001 chr3L_13335001 RAL-303_100b 3189 chr3L 13438442 13438498 chr3L 13438542 13438599 71 96 18.5 22.0 20.2 3.3 157 chr3L 13438442 exon CG10725 + chr3L 13438520 exon CG10725 + chr3L 13438599 exon CG10725 + chr3L_71_13435001 chr3L_13435001 RAL-303_100b 3190 chr3L 13525131 13525156 chr3L 13532952 13532977 roo 22 7820 34.5 18.5 26.5 0.8 7846 chr3L 13525131 intergenic not near genes chr3L 13529054 intergenic not near genes chr3L 13532977 intergenic not near genes chr3L_22_13525001 chr3L_13525001 RAL-303_100b 3191 chr3L 13525157 13525189 chr3L 13532951 13532999 roo 31 7815 15.0 17.5 16.2 1.8 7842 chr3L 13525157 intergenic not near genes chr3L 13529078 intergenic not near genes chr3L 13532999 intergenic not near genes chr3L_31_13525001 chr3L_13525001 RAL-303_100b 3192 chr3L 13574605 13574606 chr3L 13580141 13580142 Rt1c 5 5536 36.0 19.0 27.5 0.2 5537 chr3L 13574605 intron bru-3 - chr3L 13577374 intron bru-3 - chr3L 13580142 intron bru-3 - chr3L_5_13575001 chr3L_13575001 RAL-303_100b 3193 chr3L 13574607 13574612 chr3L 13580138 13580148 Rt1c 6 5535 31.0 19.0 25.0 0.2 5541 chr3L 13574607 intron bru-3 - chr3L 13577378 intron bru-3 - chr3L 13580148 intron bru-3 - chr3L_6_13575001 chr3L_13575001 RAL-303_100b 3194 chr3L 13574613 13574620 chr3L 13580132 13580156 Rt1c 15 5531 26.0 16.5 21.2 0.7 5543 chr3L 13574613 intron bru-3 - chr3L 13577384 intron bru-3 - chr3L 13580156 intron bru-3 - chr3L_15_13575001 chr3L_13575001 RAL-303_100b 3195 chr3L 13629505 13629545 chr3L 13629639 13629679 40 133 13.0 23.0 18.0 2.1 174 chr3L 13629505 intron bru-3 - chr3L 13629592 intron bru-3 - chr3L 13629679 intron bru-3 - chr3L_40_13625001 chr3L_13625001 RAL-303_100b 3196 chr3L 13665554 13665560 chr3L 13665666 13665672 7 111 33.5 25.5 29.5 0.2 118 chr3L 13665554 intron bru-3 - chr3L 13665613 intron bru-3 - chr3L 13665672 intron bru-3 - chr3L_7_13665001 chr3L_13665001 RAL-303_100b 3197 chr3L 13665561 13665604 chr3L 13665661 13665708 42 102 11.0 23.5 17.2 2.3 147 chr3L 13665561 intron bru-3 - chr3L 13665634 intron bru-3 - chr3L 13665708 intron bru-3 - chr3L_42_13665001 chr3L_13665001 RAL-303_100b 3198 chr3L 702536 702537 chr3L 13676543 13676544 4 12974007 86.5 21.5 54.0 0.1 12974008 chr3L 702536 intergenic not near genes chr3L 7189540 5` UTR Dscam2 - chr3L 13676544 intron bru-3 - chr3L_4_7185001 chr3L_7185001 RAL-303_100b 3199 chr3L 13692141 13692157 chr3L 13692254 13692270 12 112 7.0 22.0 14.5 0.8 129 chr3L 13692141 intron bru-3 - chr3L 13692206 intron bru-3 - chr3L 13692270 intron bru-3 - chr3L_12_13690001 chr3L_13690001 RAL-303_100b 3200 chr3L 13740010 13740032 chr3L 13740127 13740149 21 116 20.0 22.5 21.2 0.9 139 chr3L 13740010 intron bru-3 - chr3L 13740080 intron bru-3 - chr3L 13740149 intron bru-3 - chr3L_21_13740001 chr3L_13740001 RAL-303_100b 3201 chr3L 13740033 13740048 chr3L 13740124 13740155 15 110 8.5 20.5 14.5 1.0 122 chr3L 13740033 intron bru-3 - chr3L 13740094 intron bru-3 - chr3L 13740155 intron bru-3 - chr3L_15_13740001 chr3L_13740001 RAL-303_100b 3202 chr3L 13766880 13766921 chr3L 13767003 13767044 28 120 15.5 10.5 13.0 2.0 164 chr3L 13766880 intron bru-3 - chr3L 13766962 intron bru-3 - chr3L 13767044 intron bru-3 - chr3L_28_13765001 chr3L_13765001 RAL-303_100b 3203 chr3L 13804523 13804570 chr3L 13822831 13822881 roo 39 18309 11.0 14.5 12.8 2.8 18358 chr3L 13804523 intergenic not near genes chr3L 13813702 intergenic not near genes chr3L 13822881 intergenic not near genes chr3L_39_13810001 chr3L_13810001 RAL-303_100b 3204 chr3L 13833952 13834009 chr3L 13834089 13834133 21 135 7.5 13.5 10.5 1.8 181 chr3L 13833952 intergenic not near genes chr3L 13834042 intergenic not near genes chr3L 13834133 intergenic not near genes chr3L_21_13830001 chr3L_13830001 RAL-303_100b 3205 chr3L 13862384 13862395 chr3L 13862773 13862784 8 388 39.5 17.0 28.2 0.3 400 chr3L 13862384 intron CG8745 - chr3L 13862584 intron CG8745 - chr3L 13862784 intron CG8745 - chr3L_8_13860001 chr3L_13860001 RAL-303_100b 3206 chr3L 13862396 13862440 chr3L 13862772 13862814 48 385 17.0 16.5 16.8 2.7 418 chr3L 13862396 intron CG8745 - chr3L 13862605 intron CG8745 - chr3L 13862814 intron CG8745 - chr3L_48_13860001 chr3L_13860001 RAL-303_100b 3207 chr3L 13884355 13884371 chr3L 13884471 13884487 10 115 32.0 13.0 22.5 0.4 132 chr3L 13884355 intron dysc - chr3L 13884421 intron dysc - chr3L 13884487 intron dysc - chr3L_10_13880001 chr3L_13880001 RAL-303_100b 3208 chr3L 13884379 13884387 chr3L 13884470 13884503 6 112 24.0 12.0 18.0 0.3 124 chr3L 13884379 intron dysc - chr3L 13884441 intron dysc - chr3L 13884503 intron dysc - chr3L_6_13880001 chr3L_13880001 RAL-303_100b 3209 chr3L 13920394 13920434 chr3L 13920499 13920539 35 104 13.0 17.0 15.0 2.2 145 chr3L 13920394 intron Rgl - chr3L 13920466 intron Rgl - chr3L 13920539 intron Rgl - chr3L_35_13920001 chr3L_13920001 RAL-303_100b 3210 chr3L 13931309 13931370 chr3L 13931439 13931500 19 130 5.5 0.0 2.8 5.0 191 chr3L 13931309 intron Gl + chr3L 13931404 intron Gl + chr3L 13931500 intron Gl + chr3L_19_13930001 chr3L_13930001 RAL-303_100b 3211 chr3L 13993985 13993997 chr3L 13994090 13994102 4 105 10.5 12.0 11.2 0.3 117 chr3L 13993985 intergenic 26-29-p + chr3L 13994044 intergenic 26-29-p + chr3L 13994102 intergenic 26-29-p + chr3L_4_13990001 chr3L_13990001 RAL-303_100b 3212 chr3L 14050520 14050544 chr3L 14050974 14050999 12 452 0.5 29.0 14.8 0.8 479 chr3L 14050520 intergenic not near genes chr3L 14050760 intergenic CG6833 + chr3L 14050999 intergenic CG6833 + chr3L_12_14050001 chr3L_14050001 RAL-303_100b 3213 chr3L 14050548 14050554 chr3L 14050960 14051008 5 445 0.5 24.5 12.5 0.4 460 chr3L 14050548 intergenic not near genes chr3L 14050778 intergenic CG6833 + chr3L 14051008 intergenic CG6833 + chr3L_5_14050001 chr3L_14050001 RAL-303_100b 3214 chr3L 14060313 14060333 chr3L 14060514 14060514 17 200 0.0 2.5 1.2 7.7 201 chr3L 14060313 intron CG32138 + chr3L 14060414 intron CG32138 + chr3L 14060514 intron CG32138 + chr3L_17_14060001 chr3L_14060001 RAL-303_100b 3215 chr3L 14092713 14092736 chr3L 14092821 14092844 7 108 13.0 4.0 8.5 0.7 131 chr3L 14092713 intergenic not near genes chr3L 14092778 intergenic not near genes chr3L 14092844 intergenic not near genes chr3L_7_14090001 chr3L_14090001 RAL-303_100b 3216 chr3L 14099416 14099425 chr3L 14099531 14099540 7 115 13.0 30.5 21.8 0.3 124 chr3L 14099416 intergenic not near genes chr3L 14099478 intergenic not near genes chr3L 14099540 intergenic not near genes chr3L_7_14095001 chr3L_14095001 RAL-303_100b 3217 chr3L 14110562 14110618 chr3L 14110664 14110725 47 105 11.0 13.5 12.2 3.6 163 chr3L 14110562 intergenic not near genes chr3L 14110644 intergenic not near genes chr3L 14110725 intergenic not near genes chr3L_47_14110001 chr3L_14110001 RAL-303_100b 3218 chr3L 14118987 14119025 chr3L 14119108 14119146 38 119 29.0 21.0 25.0 1.5 159 chr3L 14118987 intron Sox21b - chr3L 14119066 intron Sox21b - chr3L 14119146 intron Sox21b - chr3L_38_14115001 chr3L_14115001 RAL-303_100b 3219 chr3L 14119026 14119044 chr3L 14119107 14119165 26 113 16.0 20.5 18.2 1.4 139 chr3L 14119026 intron Sox21b - chr3L 14119096 intron Sox21b - chr3L 14119165 intron Sox21b - chr3L_26_14115001 chr3L_14115001 RAL-303_100b 3220 chr3L 14168319 14168329 chr3L 14168425 14168435 8 106 12.0 0.0 6.0 1.1 116 chr3L 14168319 intergenic not near genes chr3L 14168377 intergenic not near genes chr3L 14168435 intergenic not near genes chr3L_8_14165001 chr3L_14165001 RAL-303_100b 3221 chr3L 14194702 14194739 chr3L 14194798 14194840 37 100 13.5 15.0 14.2 2.4 138 chr3L 14194702 intron nuf + chr3L 14194771 intron nuf + chr3L 14194840 intron nuf + chr3L_37_14190001 chr3L_14190001 RAL-303_100b 3222 chr3L 14199316 14199375 chr3L 14199432 14199481 69 113 9.5 10.5 10.0 6.3 165 chr3L 14199316 intron nuf + chr3L 14199398 intron nuf + chr3L 14199481 intron nuf + chr3L_69_14195001 chr3L_14195001 RAL-303_100b 3223 chr3L 14211413 14211466 chr3L 14211516 14211569 59 101 14.5 13.5 14.0 3.9 156 chr3L 14211413 intron nuf + chr3L 14211491 intron nuf + chr3L 14211569 intron nuf + chr3L_59_14210001 chr3L_14210001 RAL-303_100b 3224 chr3L 14234818 14234830 chr3L 14234940 14234952 7 121 19.5 15.0 17.2 0.4 134 chr3L 14234818 intergenic CG7924 +,CG34244 - chr3L 14234885 intergenic CG34244 -,CG7924 + chr3L 14234952 intergenic CG34244 -,CG7924 + chr3L_7_14230001 chr3L_14230001 RAL-303_100b 3225 chr3L 14234831 14234855 chr3L 14234938 14234977 22 120 14.0 14.5 14.2 1.4 146 chr3L 14234831 intergenic CG34244 -,CG7924 + chr3L 14234904 intergenic CG34244 -,CG7924 + chr3L 14234977 intergenic CG34244 -,CG7924 + chr3L_22_14230001 chr3L_14230001 RAL-303_100b 3226 chr3L 14245553 14245562 chr3L 14245672 14245681 1360 8 119 37.5 19.0 28.2 0.3 128 chr3L 14245553 3` UTR CR44561 - chr3L 14245617 3` UTR CR44561 - chr3L 14245681 3` UTR CR44561 - chr3L_8_14245001 chr3L_14245001 RAL-303_100b 3227 chr3L 14245564 14245594 chr3L 14245667 14245713 1360 34 116 21.0 17.5 19.2 1.7 149 chr3L 14245564 3` UTR CR44561 - chr3L 14245638 3` UTR CR44561 - chr3L 14245713 intergenic CR44561 -,CR44560 + chr3L_34_14245001 chr3L_14245001 RAL-303_100b 3228 chr3L 14267385 14267402 chr3L 14271821 14271838 F-element 17 4433 20.5 0.0 10.2 1.5 4453 chr3L 14267385 intergenic not near genes chr3L 14269612 intergenic not near genes chr3L 14271838 intergenic not near genes chr3L_17_14265001 chr3L_14265001 RAL-303_100b 3229 chr3L 14282561 14282607 chr3L 14282666 14282712 53 102 20.0 24.0 22.0 2.3 151 chr3L 14282561 intron fz + chr3L 14282636 intron fz + chr3L 14282712 intron fz + chr3L_53_14280001 chr3L_14280001 RAL-303_100b 3230 chr3L 14295955 14296016 chr3L 14296466 14296487 roo 59 505 17.5 19.0 18.2 3.1 532 chr3L 14295955 intron fz + chr3L 14296221 intron fz + chr3L 14296487 intron fz + chr3L_59_14295001 chr3L_14295001 RAL-303_100b 3231 chr3L 14302965 14302999 chr3L 14303074 14303103 24 106 16.0 8.0 12.0 1.8 138 chr3L 14302965 intron fz + chr3L 14303034 intron fz + chr3L 14303103 intron fz + chr3L_24_14300001 chr3L_14300001 RAL-303_100b 3232 chr3L 14303000 14303004 chr3L 14303073 14303103 4 90 12.0 7.5 9.8 0.4 103 chr3L 14303000 intron fz + chr3L 14303052 intron fz + chr3L 14303103 intron fz + chr3L_4_14300001 chr3L_14300001 RAL-303_100b 3233 chr3L 14303474 14303532 chr3L 14303620 14303678 24 144 0.0 12.0 6.0 3.4 204 chr3L 14303474 intron fz + chr3L 14303576 intron fz + chr3L 14303678 intron fz + chr3L_24_14300001 chr3L_14300001 RAL-303_100b 3234 chr3L 14312022 14312042 chr3L 14316835 14316845 X-element 20 4828 23.0 11.0 17.0 1.1 4823 chr3L 14312022 exon fz + chr3L 14314434 intron fz + chr3L 14316845 intron fz + chr3L_20_14310001 chr3L_14310001 RAL-303_100b 3235 chr3L 14312043 14312055 chr3L 14316834 14316874 X-element 8 4826 18.5 10.5 14.5 0.5 4831 chr3L 14312043 exon fz + chr3L 14314458 intron fz + chr3L 14316874 intron fz + chr3L_8_14310001 chr3L_14310001 RAL-303_100b 3236 chr3L 14338277 14338321 chr3L 14338393 14338442 28 119 1.0 10.0 5.5 4.3 165 chr3L 14338277 intron fz + chr3L 14338360 intron fz + chr3L 14338442 intron fz + chr3L_28_14335001 chr3L_14335001 RAL-303_100b 3237 chr3L 14341387 14341438 chr3L 14341547 14341598 23 159 7.5 4.0 5.8 3.4 211 chr3L 14341387 intron fz + chr3L 14341492 intron fz + chr3L 14341598 intron fz + chr3L_23_14340001 chr3L_14340001 RAL-303_100b 3238 chr3L 14356425 14356484 chr3L 14356537 14356596 55 108 11.0 17.5 14.2 3.6 171 chr3L 14356425 intron fz + chr3L 14356510 intron fz + chr3L 14356596 intron fz + chr3L_55_14355001 chr3L_14355001 RAL-303_100b 3239 chr3L 14399152 14399177 chr3L 14399266 14399272 4 109 28.5 0.0 14.2 0.3 120 chr3L 14399152 intergenic not near genes chr3L 14399212 intergenic not near genes chr3L 14399272 intergenic not near genes chr3L_4_14395001 chr3L_14395001 RAL-303_100b 3240 chr3L 14439187 14439247 chr3L 14439375 14439435 44 185 10.5 8.0 9.2 4.3 248 chr3L 14439187 intron bbg - chr3L 14439311 intron bbg - chr3L 14439435 intron bbg - chr3L_44_14435001 chr3L_14435001 RAL-303_100b 3241 chr3L 14455350 14455393 chr3L 14455450 14455499 23 102 13.0 7.5 10.2 2.1 149 chr3L 14455350 intron bbg - chr3L 14455424 intron bbg - chr3L 14455499 intron bbg - chr3L_23_14455001 chr3L_14455001 RAL-303_100b 3242 chr3L 14462878 14462882 chr3L 14462991 14462995 6 113 3.5 21.5 12.5 0.4 117 chr3L 14462878 intron bbg - chr3L 14462936 intron bbg - chr3L 14462995 intron bbg - chr3L_6_14460001 chr3L_14460001 RAL-303_100b 3243 chr3L 14462883 14462910 chr3L 14462981 14463023 20 111 2.5 17.0 9.8 1.9 140 chr3L 14462883 intron bbg - chr3L 14462953 intron bbg - chr3L 14463023 intron bbg - chr3L_20_14460001 chr3L_14460001 RAL-303_100b 3244 chr3L 14468422 14468476 chr3L 14473653 14473707 copia 53 5230 12.0 11.5 11.8 4.1 5285 chr3L 14468422 intron bbg - chr3L 14471064 intron bbg - chr3L 14473707 intron bbg - chr3L_53_14470001 chr3L_14470001 RAL-303_100b 3245 chr3L 14485993 14486036 chr3L 14486099 14486135 37 104 14.0 14.0 14.0 2.5 142 chr3L 14485993 intron bbg - chr3L 14486064 intron bbg - chr3L 14486135 intron bbg - chr3L_37_14485001 chr3L_14485001 RAL-303_100b 3246 chr3L 14522075 14522130 chr3L 14522199 14522254 50 123 10.0 12.0 11.0 4.2 179 chr3L 14522075 intron bbg - chr3L 14522164 intron bbg - chr3L 14522254 intron bbg - chr3L_50_14520001 chr3L_14520001 RAL-303_100b 3247 chr3L 14531204 14531243 chr3L 14531332 14531371 13 128 2.5 10.0 6.2 1.8 167 chr3L 14531204 intron bbg - chr3L 14531288 intron bbg - chr3L 14531371 intron bbg - chr3L_13_14530001 chr3L_14530001 RAL-303_100b 3248 chr3L 14546803 14546807 chr3L 14546932 14546936 4 129 0.0 25.5 12.8 0.3 133 chr3L 14546803 intron CG9238 - chr3L 14546870 intron CG9238 - chr3L 14546936 intron CG9238 - chr3L_4_14545001 chr3L_14545001 RAL-303_100b 3249 chr3L 14546809 14546813 chr3L 14546928 14546942 7 127 0.0 23.5 11.8 0.5 133 chr3L 14546809 intron CG9238 - chr3L 14546876 intron CG9238 - chr3L 14546942 intron CG9238 - chr3L_7_14545001 chr3L_14545001 RAL-303_100b 3250 chr3L 14546814 14546817 chr3L 14546923 14546926 6 122 0.0 20.5 10.2 0.5 112 chr3L 14546814 intron CG9238 - chr3L 14546870 intron CG9238 - chr3L 14546926 intron CG9238 - chr3L_6_14545001 chr3L_14545001 RAL-303_100b 3251 chr3L 14555886 14555940 chr3L 14555992 14556047 49 105 15.0 18.5 16.8 2.8 161 chr3L 14555886 intergenic not near genes chr3L 14555966 intergenic not near genes chr3L 14556047 intergenic not near genes chr3L_49_14555001 chr3L_14555001 RAL-303_100b 3252 chr3L 14596196 14596203 chr3L 14596317 14596324 6 121 17.0 9.5 13.2 0.4 128 chr3L 14596196 intron HGTX - chr3L 14596260 intron HGTX - chr3L 14596324 intron HGTX - chr3L_6_14595001 chr3L_14595001 RAL-303_100b 3253 chr3L 14618378 14618425 chr3L 14618618 14618665 43 236 18.0 8.0 13.0 3.1 287 chr3L 14618378 intron shd + chr3L 14618522 intron shd + chr3L 14618665 intron shd + chr3L_43_14615001 chr3L_14615001 RAL-303_100b 3254 chr3L 14627184 14627216 chr3L 14627296 14627328 10 112 11.5 10.0 10.8 0.8 144 chr3L 14627184 intron CG9628 + chr3L 14627256 intron CG9628 + chr3L 14627328 intron CG9628 + chr3L_10_14625001 chr3L_14625001 RAL-303_100b 3255 chr3L 14702007 14702018 chr3L 14702096 14702122 12 100 0.5 21.5 11.0 1.0 115 chr3L 14702007 intron ome + chr3L 14702064 intron ome + chr3L 14702122 intron ome + chr3L_12_14700001 chr3L_14700001 RAL-303_100b 3256 chr3L 14715723 14715755 chr3L 14715835 14715867 30 112 11.0 9.0 10.0 2.7 144 chr3L 14715723 intron ome + chr3L 14715795 intron ome + chr3L 14715867 intron ome + chr3L_30_14715001 chr3L_14715001 RAL-303_100b 3257 chr3L 14721165 14721179 chr3L 14723028 14723047 Rt1c 14 1866 38.5 18.0 28.2 0.5 1882 chr3L 14721165 intron ome + chr3L 14722106 intron ome + chr3L 14723047 intron ome + chr3L_14_14720001 chr3L_14720001 RAL-303_100b 3258 chr3L 14721183 14721210 chr3L 14723027 14723064 Rt1c 13 1858 21.5 17.0 19.2 0.6 1881 chr3L 14721183 intron ome + chr3L 14722124 intron ome + chr3L 14723064 intron ome + chr3L_13_14720001 chr3L_14720001 RAL-303_100b 3259 chr3L 14725578 14725626 chr3L 14728606 14728653 Doc 13 3027 6.5 5.0 5.8 1.9 3075 chr3L 14725578 intron ome + chr3L 14727116 intron ome + chr3L 14728653 intron ome + chr3L_13_14725001 chr3L_14725001 RAL-303_100b 3260 chr3L 14825136 14825159 chr3L 14832888 14832910 Stalker2 18 7752 1.0 16.5 8.8 1.8 7774 chr3L 14825136 intron CG17839 + chr3L 14829023 intron CG17839 + chr3L 14832910 intron CG17839 + chr3L_18_14825001 chr3L_14825001 RAL-303_100b 3261 chr3L 14840333 14840392 chr3L 14840463 14840522 26 129 7.0 16.0 11.5 2.1 189 chr3L 14840333 intron CG17839 + chr3L 14840428 intron CG17839 + chr3L 14840522 intron CG17839 + chr3L_26_14840001 chr3L_14840001 RAL-303_100b 3262 chr3L 14870039 14870079 chr3L 14870140 14870180 32 100 12.0 19.5 15.8 1.9 141 chr3L 14870039 intron CG17839 + chr3L 14870110 intron CG17839 + chr3L 14870180 intron CG17839 + chr3L_32_14870001 chr3L_14870001 RAL-303_100b 3263 chr3L 14893631 14893635 chr3L 14893741 14893745 4 110 39.0 17.0 28.0 0.1 114 chr3L 14893631 intergenic CG34245 - chr3L 14893688 intergenic CG34245 - chr3L 14893745 3` UTR CG34245 - chr3L_4_14890001 chr3L_14890001 RAL-303_100b 3264 chr3L 14893639 14893686 chr3L 14893739 14893796 55 106 15.0 15.0 15.0 3.4 157 chr3L 14893639 intergenic CG34245 - chr3L 14893718 intergenic CG34245 - chr3L 14893796 3` UTR CG34245 - chr3L_55_14890001 chr3L_14890001 RAL-303_100b 3265 chr3L 14913876 14913932 chr3L 14913978 14914021 44 97 19.5 12.5 16.0 2.6 145 chr3L 14913876 intron DCX-EMAP + chr3L 14913948 intron DCX-EMAP + chr3L 14914021 intron DCX-EMAP + chr3L_44_14910001 chr3L_14910001 RAL-303_100b 3266 chr3L 14922080 14922083 chr3L 14922213 14922216 5 133 39.0 13.0 26.0 0.2 136 chr3L 14922080 intron DCX-EMAP + chr3L 14922148 intron DCX-EMAP + chr3L 14922216 intron DCX-EMAP + chr3L_5_14920001 chr3L_14920001 RAL-303_100b 3267 chr3L 14922086 14922115 chr3L 14922212 14922231 17 127 22.0 13.0 17.5 0.9 145 chr3L 14922086 intron DCX-EMAP + chr3L 14922158 intron DCX-EMAP + chr3L 14922231 intron DCX-EMAP + chr3L_17_14920001 chr3L_14920001 RAL-303_100b 3268 chr3L 14922117 14922133 chr3L 14922209 14922266 7 112 15.0 12.5 13.8 0.5 149 chr3L 14922117 intron DCX-EMAP + chr3L 14922192 intron DCX-EMAP + chr3L 14922266 intron DCX-EMAP + chr3L_7_14920001 chr3L_14920001 RAL-303_100b 3269 chr3L 14933429 14933461 chr3L 14933536 14933541 19 105 7.0 22.5 14.8 1.2 112 chr3L 14933429 intron DCX-EMAP + chr3L 14933485 intron DCX-EMAP + chr3L 14933541 intron DCX-EMAP + chr3L_19_14930001 chr3L_14930001 RAL-303_100b 3270 chr3L 14961853 14961913 chr3L 14962228 14962288 83 373 10.0 11.5 10.8 7.0 435 chr3L 14961853 intergenic not near genes chr3L 14962070 intergenic not near genes chr3L 14962288 intergenic not near genes chr3L_83_14960001 chr3L_14960001 RAL-303_100b 3271 chr3L 14970758 14970763 chr3L 14971089 14971100 F-element 4 335 0.5 6.0 3.2 1.0 342 chr3L 14970758 intergenic Tom + chr3L 14970929 intergenic not near genes chr3L 14971100 intergenic not near genes chr3L_4_14970001 chr3L_14970001 RAL-303_100b 3272 chr3L 15085022 15085085 chr3L 15086213 15086243 1360 43 1183 6.5 7.0 6.8 5.5 1221 chr3L 15085022 intron cp309 - chr3L 15085632 intron cp309 - chr3L 15086243 intron cp309 - chr3L_43_15085001 chr3L_15085001 RAL-303_100b 3273 chr3L 15094947 15094962 chr3L 15095068 15095083 12 121 27.0 11.0 19.0 0.6 136 chr3L 15094947 intergenic Aats-gly +,cp309 -,CG6945 - chr3L 15095015 intergenic Aats-gly +,cp309 -,CG6945 - chr3L 15095083 intergenic Aats-gly +,cp309 -,CG6945 - chr3L_12_15095001 chr3L_15095001 RAL-303_100b 3274 chr3L 15100408 15100431 chr3L 15100522 15100543 11 112 30.0 9.0 19.5 0.5 135 chr3L 15100408 intron,3` UTR CTPsyn +,CR43972 - chr3L 15100476 intron,3` UTR CTPsyn +,CR43972 - chr3L 15100543 intron,3` UTR CTPsyn +,CR43972 - chr3L_11_15100001 chr3L_15100001 RAL-303_100b 3275 chr3L 15100432 15100466 chr3L 15100521 15100570 18 110 13.5 8.5 11.0 1.5 138 chr3L 15100432 intron,3` UTR CTPsyn +,CR43972 - chr3L 15100501 intron,3` UTR CTPsyn +,CR43972 - chr3L 15100570 intron,3` UTR CTPsyn +,CR43972 - chr3L_18_15100001 chr3L_15100001 RAL-303_100b 3276 chr3L 15164997 15165047 chr3L 15165120 15165151 15 122 0.0 0.0 0.0 15.0 154 chr3L 15164997 intergenic not near genes chr3L 15165074 intergenic not near genes chr3L 15165151 intergenic not near genes chr3L_15_15165001 chr3L_15165001 RAL-303_100b 3277 chr3L 15233538 15233584 chr3L 15233644 15233690 21 105 11.0 7.5 9.2 2.1 152 chr3L 15233538 intergenic not near genes chr3L 15233614 intergenic not near genes chr3L 15233690 intergenic not near genes chr3L_21_15230001 chr3L_15230001 RAL-303_100b 3278 chr3L 15257414 15257450 chr3L 15257652 15257688 36 237 9.5 8.5 9.0 3.6 274 chr3L 15257414 intergenic not near genes chr3L 15257551 intergenic not near genes chr3L 15257688 intergenic not near genes chr3L_36_15255001 chr3L_15255001 RAL-303_100b 3279 chr3L 15295746 15295801 chr3L 15298614 15298669 gypsy5 42 2867 19.0 17.5 18.2 2.2 2923 chr3L 15295746 intergenic not near genes chr3L 15297208 intergenic not near genes chr3L 15298669 intergenic Best4 + chr3L_42_15295001 chr3L_15295001 RAL-303_100b 3280 chr3L 15333116 15333170 chr3L 15333220 15333277 17 101 1.0 15.0 8.0 1.9 161 chr3L 15333116 intergenic CR43247 + chr3L 15333196 intergenic CR43247 + chr3L 15333277 intergenic CR43247 + chr3L_17_15330001 chr3L_15330001 RAL-303_100b 3281 chr3L 15335451 15335494 chr3L 15335597 15335641 43 144 21.0 13.5 17.2 2.4 190 chr3L 15335451 intron CR43992 + chr3L 15335546 intron CR43992 + chr3L 15335641 intron CR43992 + chr3L_43_15335001 chr3L_15335001 RAL-303_100b 3282 chr3L 15423735 15423779 chr3L 15426604 15426648 opus 25 2868 15.0 6.5 10.8 2.1 2913 chr3L 15423735 intergenic not near genes chr3L 15425192 intergenic not near genes chr3L 15426648 intergenic not near genes chr3L_25_15425001 chr3L_15425001 RAL-303_100b 3283 chr3L 15444625 15444685 chr3L 15444744 15444753 53 112 16.0 16.5 16.2 3.1 128 chr3L 15444625 intergenic not near genes chr3L 15444689 intergenic not near genes chr3L 15444753 intergenic not near genes chr3L_53_15440001 chr3L_15440001 RAL-303_100b 3284 chr3L 15450311 15450329 chr3L 15450424 15450435 5 112 21.0 0.0 10.5 0.4 124 chr3L 15450311 intergenic not near genes chr3L 15450373 intergenic not near genes chr3L 15450435 intergenic not near genes chr3L_5_15450001 chr3L_15450001 RAL-303_100b 3285 chr3L 15466012 15466135 chr3L 15466119 15466256 21 110 0.0 0.0 0.0 21.0 244 chr3L 15466012 intergenic not near genes chr3L 15466134 intergenic not near genes chr3L 15466256 intergenic not near genes chr3L_21_15465001 chr3L_15465001 RAL-303_100b 3286 chr3L 15502486 15502536 chr3L 15502589 15502625 34 101 2.0 11.5 6.8 4.4 139 chr3L 15502486 intron CG7272 + chr3L 15502556 intron CG7272 + chr3L 15502625 intron CG7272 + chr3L_34_15500001 chr3L_15500001 RAL-303_100b 3287 chr3L 15515068 15515081 chr3L 15515172 15515185 10 102 37.0 17.0 27.0 0.4 117 chr3L 15515068 intergenic not near genes chr3L 15515126 intergenic not near genes chr3L 15515185 intergenic not near genes chr3L_10_15515001 chr3L_15515001 RAL-303_100b 3288 chr3L 15541595 15541617 chr3L 15541710 15541724 8 113 25.0 8.0 16.5 0.5 129 chr3L 15541595 intron CrebA + chr3L 15541660 intron CrebA + chr3L 15541724 intron CrebA + chr3L_8_15540001 chr3L_15540001 RAL-303_100b 3289 chr3L 15541619 15541652 chr3L 15541707 15541768 24 114 12.5 7.5 10.0 2.2 149 chr3L 15541619 intron CrebA + chr3L 15541694 intron CrebA + chr3L 15541768 intron CrebA + chr3L_24_15540001 chr3L_15540001 RAL-303_100b 3290 chr3L 15554899 15554950 chr3L 15556708 15556762 S-element 47 1812 8.0 20.5 14.2 3.1 1863 chr3L 15554899 intron AGO2 + chr3L 15555830 intron AGO2 + chr3L 15556762 intron AGO2 + chr3L_47_15555001 chr3L_15555001 RAL-303_100b 3291 chr3L 15591871 15591920 chr3L 15592232 15592241 16 356 14.0 15.5 14.8 1.0 370 chr3L 15591871 intron RhoGAP71E + chr3L 15592056 intron RhoGAP71E + chr3L 15592241 intron RhoGAP71E + chr3L_16_15590001 chr3L_15590001 RAL-303_100b 3292 chr3L 15600145 15600197 chr3L 15600255 15600323 27 125 17.0 0.0 8.5 2.8 178 chr3L 15600145 intron RhoGAP71E + chr3L 15600234 intron RhoGAP71E + chr3L 15600323 intron RhoGAP71E + chr3L_27_15600001 chr3L_15600001 RAL-303_100b 3293 chr3L 15633158 15633215 chr3L 15633263 15633320 41 103 7.5 3.5 5.5 6.3 162 chr3L 15633158 intron comm3 - chr3L 15633239 intron comm3 - chr3L 15633320 intron comm3 - chr3L_41_15630001 chr3L_15630001 RAL-303_100b 3294 chr3L 15637170 15637193 chr3L 15637272 15637286 27 101 18.5 27.5 23.0 1.1 116 chr3L 15637170 intron comm3 - chr3L 15637228 intron comm3 - chr3L 15637286 intron comm3 - chr3L_27_15635001 chr3L_15635001 RAL-303_100b 3295 chr3L 15641782 15641814 chr3L 15641892 15641924 9 110 0.0 18.0 9.0 0.9 142 chr3L 15641782 intron comm3 - chr3L 15641853 intron comm3 - chr3L 15641924 intron comm3 - chr3L_9_15640001 chr3L_15640001 RAL-303_100b 3296 chr3L 15651156 15651171 chr3L 15651264 15651279 12 107 35.5 9.5 22.5 0.5 123 chr3L 15651156 exon CG43084 + chr3L 15651218 exon CG43084 + chr3L 15651279 exon CG43084 + chr3L_12_15650001 chr3L_15650001 RAL-303_100b 3297 chr3L 15651173 15651182 chr3L 15651263 15651290 9 103 31.5 9.0 20.2 0.4 117 chr3L 15651173 exon CG43084 + chr3L 15651232 exon CG43084 + chr3L 15651290 exon CG43084 + chr3L_9_15650001 chr3L_15650001 RAL-303_100b 3298 chr3L 15651184 15651202 chr3L 15651261 15651291 11 94 17.5 8.0 12.8 0.8 107 chr3L 15651184 exon CG43084 + chr3L 15651238 exon CG43084 + chr3L 15651291 exon CG43084 + chr3L_11_15650001 chr3L_15650001 RAL-303_100b 3299 chr3L 15737369 15737402 chr3L 15737484 15737517 12 115 9.0 7.0 8.0 1.3 148 chr3L 15737369 intergenic not near genes chr3L 15737443 intergenic not near genes chr3L 15737517 intergenic not near genes chr3L_12_15735001 chr3L_15735001 RAL-303_100b 3300 chr3L 15756855 15756887 chr3L 15756963 15756992 16 107 31.0 2.5 16.8 0.9 137 chr3L 15756855 intergenic not near genes chr3L 15756924 intergenic not near genes chr3L 15756992 intergenic not near genes chr3L_16_15755001 chr3L_15755001 RAL-303_100b 3301 chr3L 15756888 15756905 chr3L 15756961 15756978 8 84 21.5 2.5 12.0 0.6 90 chr3L 15756888 intergenic not near genes chr3L 15756933 intergenic not near genes chr3L 15756978 intergenic not near genes chr3L_8_15755001 chr3L_15755001 RAL-303_100b 3302 chr3L 15769089 15769122 chr3L 15769206 15769239 24 115 10.5 18.0 14.2 1.6 150 chr3L 15769089 intergenic not near genes chr3L 15769164 intergenic not near genes chr3L 15769239 intergenic not near genes chr3L_24_15765001 chr3L_15765001 RAL-303_100b 3303 chr3L 15781629 15781675 chr3L 15781785 15781844 8 163 0.5 0.0 0.2 6.7 215 chr3L 15781629 intergenic not near genes chr3L 15781736 intergenic not near genes chr3L 15781844 intergenic not near genes chr3L_8_15780001 chr3L_15780001 RAL-303_100b 3304 chr3L 15840410 15840468 chr3L 15840522 15840578 22 108 9.0 10.0 9.5 2.1 168 chr3L 15840410 intron CG32150 - chr3L 15840494 intron CG32150 - chr3L 15840578 intron CG32150 - chr3L_22_15840001 chr3L_15840001 RAL-303_100b 3305 chr3L 15899207 15899224 chr3L 15899794 15899801 jockey 11 586 21.0 14.0 17.5 0.6 594 chr3L 15899207 intergenic pHCl - chr3L 15899504 intergenic pHCl - chr3L 15899801 intergenic sff - chr3L_11_15895001 chr3L_15895001 RAL-303_100b 3306 chr3L 15899225 15899248 chr3L 15899788 15899840 jockey 20 580 12.0 12.5 12.2 1.5 615 chr3L 15899225 intergenic pHCl - chr3L 15899532 intergenic not near genes chr3L 15899840 intergenic sff - chr3L_20_15895001 chr3L_15895001 RAL-303_100b 3307 chr3L 15899253 15899260 chr3L 15899785 15899816 jockey 7 576 7.0 11.5 9.2 0.7 563 chr3L 15899253 intergenic pHCl - chr3L 15899534 intergenic not near genes chr3L 15899816 intergenic sff - chr3L_7_15895001 chr3L_15895001 RAL-303_100b 3308 chr3L 15903497 15903515 chr3L 15903647 15903648 7 148 6.5 0.0 3.2 1.7 151 chr3L 15903497 intron sff - chr3L 15903572 intron sff - chr3L 15903648 intron sff - chr3L_7_15900001 chr3L_15900001 RAL-303_100b 3309 chr3L 15914294 15914347 chr3L 15914421 15914463 45 123 11.0 12.0 11.5 3.6 169 chr3L 15914294 intron sff - chr3L 15914378 intron sff - chr3L 15914463 intron sff - chr3L_45_15910001 chr3L_15910001 RAL-303_100b 3310 chr3L 15918078 15918135 chr3L 15918199 15918256 52 120 11.0 15.0 13.0 3.7 178 chr3L 15918078 intron sff - chr3L 15918167 intron sff - chr3L 15918256 intron sff - chr3L_52_15915001 chr3L_15915001 RAL-303_100b 3311 chr3L 15929174 15929226 chr3L 15938346 15938373 roo 43 9171 9.0 15.5 12.2 3.3 9199 chr3L 15929174 intron Pka-C3 - chr3L 15933774 intron Pka-C3 - chr3L 15938373 intron Pka-C3 - chr3L_43_15930001 chr3L_15930001 RAL-303_100b 3312 chr3L 15946483 15946490 chr3L 15946594 15946601 9 111 42.5 0.0 21.2 0.4 118 chr3L 15946483 intron Pka-C3 - chr3L 15946542 intron Pka-C3 - chr3L 15946601 intron Pka-C3 - chr3L_9_15945001 chr3L_15945001 RAL-303_100b 3313 chr3L 15946491 15946535 chr3L 15946591 15946646 9 108 16.0 0.0 8.0 1.0 155 chr3L 15946491 intron Pka-C3 - chr3L 15946568 intron Pka-C3 - chr3L 15946646 intron Pka-C3 - chr3L_9_15945001 chr3L_15945001 RAL-303_100b 3314 chr3L 16051288 16051295 chr3L 16051399 16051406 8 111 43.0 14.0 28.5 0.3 118 chr3L 16051288 intergenic th - chr3L 16051347 intergenic th - chr3L 16051406 intergenic th - chr3L_8_16050001 chr3L_16050001 RAL-303_100b 3315 chr3L 16051296 16051344 chr3L 16051398 16051455 54 109 15.5 13.5 14.5 3.5 159 chr3L 16051296 intergenic th - chr3L 16051376 intergenic th - chr3L 16051455 intergenic th - chr3L_54_16050001 chr3L_16050001 RAL-303_100b 3316 chr3L 16070716 16070762 chr3L 16070818 16070846 36 99 15.0 15.5 15.2 2.2 130 chr3L 16070716 intron Mbs + chr3L 16070781 intron Mbs + chr3L 16070846 exon Mbs + chr3L_36_16070001 chr3L_16070001 RAL-303_100b 3317 chr3L 16145748 16145789 chr3L 16145880 16145921 26 131 0.0 15.0 7.5 3.1 173 chr3L 16145748 intron CG5151 - chr3L 16145834 intron CG5151 - chr3L 16145921 intron CG5151 - chr3L_26_16145001 chr3L_16145001 RAL-303_100b 3318 chr3L 16162585 16162592 chr3L 16162694 16162701 6 109 21.0 14.5 17.8 0.3 116 chr3L 16162585 intron CG5151 - chr3L 16162643 intron CG5151 - chr3L 16162701 intron CG5151 - chr3L_6_16160001 chr3L_16160001 RAL-303_100b 3319 chr3L 16162594 16162628 chr3L 16162691 16162737 32 107 6.0 13.5 9.8 3.0 143 chr3L 16162594 intron CG5151 - chr3L 16162666 intron CG5151 - chr3L 16162737 intron CG5151 - chr3L_32_16160001 chr3L_16160001 RAL-303_100b 3320 chr3L 16162766 16162821 chr3L 16163097 16163149 43 329 13.5 8.0 10.8 3.6 383 chr3L 16162766 intron CG5151 - chr3L 16162958 intron CG5151 - chr3L 16163149 intron CG5151 - chr3L_43_16160001 chr3L_16160001 RAL-303_100b 3321 chr3L 16184087 16184090 chr3L 16188931 16188934 X-element 4 4844 38.5 21.5 30.0 0.1 4847 chr3L 16184087 intergenic not near genes chr3L 16186510 intergenic not near genes chr3L 16188934 intergenic not near genes chr3L_4_16185001 chr3L_16185001 RAL-303_100b 3322 chr3L 16184093 16184134 chr3L 16188930 16188978 X-element 39 4840 15.5 21.0 18.2 2.0 4885 chr3L 16184093 intergenic not near genes chr3L 16186536 intergenic not near genes chr3L 16188978 intergenic not near genes chr3L_39_16185001 chr3L_16185001 RAL-303_100b 3323 chr3L 16212784 16212836 chr3L 16212900 16212952 53 115 14.5 1.0 7.8 6.0 168 chr3L 16212784 intergenic CG13073 - chr3L 16212868 intergenic CG13073 - chr3L 16212952 intergenic CG13073 - chr3L_53_16210001 chr3L_16210001 RAL-303_100b 3324 chr3L 16216991 16216995 chr3L 16217103 16217107 4 112 1.0 20.5 10.8 0.3 116 chr3L 16216991 intron CG13073 - chr3L 16217049 intron CG13073 - chr3L 16217107 intron CG13073 - chr3L_4_16215001 chr3L_16215001 RAL-303_100b 3325 chr3L 16216997 16217030 chr3L 16217094 16217142 20 104 1.0 17.5 9.2 2.0 145 chr3L 16216997 intron CG13073 - chr3L 16217070 intron CG13073 - chr3L 16217142 5` UTR CG13073 - chr3L_20_16215001 chr3L_16215001 RAL-303_100b 3326 chr3L 16359931 16360006 chr3L 16360226 16360284 17 288 0.0 12.0 6.0 2.4 353 chr3L 16359931 intron CG45057 - chr3L 16360108 intron CG45057 - chr3L 16360284 intron CG45057 - chr3L_17_16360001 chr3L_16360001 RAL-303_100b 3327 chr3L 16360859 16360917 chr3L 16360962 16361001 69 98 15.5 14.5 15.0 4.3 142 chr3L 16360859 intron CG45057 - chr3L 16360930 intron CG45057 - chr3L 16361001 intron CG45057 - chr3L_69_16360001 chr3L_16360001 RAL-303_100b 3328 chr3L 16431805 16431863 chr3L 16431924 16431983 32 117 4.0 4.5 4.2 6.2 178 chr3L 16431805 intron,intron CG33158 +,dsx-c73A - chr3L 16431894 intron,intron CG33158 +,dsx-c73A - chr3L 16431983 intron,intron CG33158 +,dsx-c73A - chr3L_32_16430001 chr3L_16430001 RAL-303_100b 3329 chr3L 16443824 16443831 chr3L 16446189 16446196 Doc 8 2365 36.0 23.5 29.8 0.3 2372 chr3L 16443824 intron,intron CG33158 +,dsx-c73A - chr3L 16445010 intron,intron CG33158 +,dsx-c73A - chr3L 16446196 intron,intron CG33158 +,dsx-c73A - chr3L_8_16445001 chr3L_16445001 RAL-303_100b 3330 chr3L 16443832 16443879 chr3L 16446188 16446244 Doc 54 2362 9.5 22.5 16.0 3.2 2412 chr3L 16443832 intron,intron CG33158 +,dsx-c73A - chr3L 16445038 intron,intron CG33158 +,dsx-c73A - chr3L 16446244 intron,intron CG33158 +,dsx-c73A - chr3L_54_16445001 chr3L_16445001 RAL-303_100b 3331 chr3L 16450004 16450053 chr3L 16450109 16450163 28 109 6.5 14.5 10.5 2.4 159 chr3L 16450004 intron,intron CG33158 +,dsx-c73A - chr3L 16450084 intron,intron CG33158 +,dsx-c73A - chr3L 16450163 intron,exon CG33158 +,dsx-c73A - chr3L_28_16450001 chr3L_16450001 RAL-303_100b 3332 chr3L 16457503 16457555 chr3L 16457624 16457675 32 119 10.0 12.0 11.0 2.7 172 chr3L 16457503 intron CG33158 + chr3L 16457589 intron CG33158 + chr3L 16457675 intron CG33158 + chr3L_32_16455001 chr3L_16455001 RAL-303_100b 3333 chr3L 16462723 16462768 chr3L 16462825 16462870 33 115 11.0 19.0 15.0 2.1 147 chr3L 16462723 intron CG33158 + chr3L 16462796 intron CG33158 + chr3L 16462870 intron CG33158 + chr3L_33_16460001 chr3L_16460001 RAL-303_100b 3334 chr3L 16493952 16494005 chr3L 16494494 16494547 jockey 45 539 24.0 23.5 23.8 1.8 595 chr3L 16493952 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494250 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494547 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_45_16490001 chr3L_16490001 RAL-303_100b 3335 chr3L 16503619 16503658 chr3L 16503721 16503760 19 98 10.0 28.5 19.2 0.9 141 chr3L 16503619 intron CG43373 - chr3L 16503690 intron CG43373 - chr3L 16503760 intron CG43373 - chr3L_19_16500001 chr3L_16500001 RAL-303_100b 3336 chr3L 16533541 16533587 chr3L 16533677 16533723 22 135 7.0 13.5 10.2 2.0 182 chr3L 16533541 intron CG43373 - chr3L 16533632 intron CG43373 - chr3L 16533723 intron CG43373 - chr3L_22_16530001 chr3L_16530001 RAL-303_100b 3337 chr3L 16537821 16537882 chr3L 16537933 16537973 43 111 4.0 13.0 8.5 4.5 152 chr3L 16537821 intron CG43373 - chr3L 16537897 intron CG43373 - chr3L 16537973 intron CG43373 - chr3L_43_16535001 chr3L_16535001 RAL-303_100b 3338 chr3L 16540028 16540084 chr3L 16540141 16540197 48 112 12.5 15.0 13.8 3.2 169 chr3L 16540028 intron CG43373 - chr3L 16540112 intron CG43373 - chr3L 16540197 intron CG43373 - chr3L_48_16540001 chr3L_16540001 RAL-303_100b 3339 chr3L 16563208 16563234 chr3L 16563312 16563336 23 105 17.5 0.5 9.0 2.3 128 chr3L 16563208 intergenic Mipp1 - chr3L 16563272 intergenic Mipp1 - chr3L 16563336 intergenic Mipp1 - chr3L_23_16560001 chr3L_16560001 RAL-303_100b 3340 chr3L 16571541 16571599 chr3L 16571647 16571705 61 105 14.5 13.0 13.8 4.1 164 chr3L 16571541 intron Mipp1 - chr3L 16571623 intron Mipp1 - chr3L 16571705 intron Mipp1 - chr3L_61_16570001 chr3L_16570001 RAL-303_100b 3341 chr3L 16581740 16581797 chr3L 16582129 16582179 58 387 13.0 14.0 13.5 4.0 439 chr3L 16581740 5` UTR CR43727 + chr3L 16581960 5` UTR CR43727 + chr3L 16582179 5` UTR CR43727 + chr3L_58_16580001 chr3L_16580001 RAL-303_100b 3342 chr3L 16616485 16616543 chr3L 16621838 16621891 297 36 5348 10.5 17.5 14.0 2.4 5406 chr3L 16616485 3` UTR Abl - chr3L 16619188 3` UTR Abl - chr3L 16621891 3` UTR Abl - chr3L_36_16615001 chr3L_16615001 RAL-303_100b 3343 chr3L 16683999 16684052 chr3L 16689245 16689270 copia 21 5243 6.0 11.0 8.5 2.2 5271 chr3L 16683999 intron,intron Lasp -,CG43954 - chr3L 16686634 intron,intron Lasp -,CG43954 - chr3L 16689270 intron,intron,5` UTR Lasp -,CG43954 -,CR45179 + chr3L_21_16685001 chr3L_16685001 RAL-303_100b 3344 chr3L 16714819 16714866 chr3L 16714928 16714975 41 109 11.0 12.0 11.5 3.3 156 chr3L 16714819 intron Dab + chr3L 16714897 intron Dab + chr3L 16714975 intron Dab + chr3L_41_16710001 chr3L_16710001 RAL-303_100b 3345 chr3L 16746803 16746854 chr3L 16746916 16746952 47 106 19.5 19.0 19.2 2.3 149 chr3L 16746803 intergenic not near genes chr3L 16746878 intergenic not near genes chr3L 16746952 intergenic not near genes chr3L_47_16745001 chr3L_16745001 RAL-303_100b 3346 chr3L 16772467 16772513 chr3L 16772582 16772626 56 114 24.0 15.0 19.5 2.7 159 chr3L 16772467 intron Nrt + chr3L 16772546 intron Nrt + chr3L 16772626 intron Nrt + chr3L_56_16770001 chr3L_16770001 RAL-303_100b 3347 chr3L 16797014 16797073 chr3L 16797385 16797444 62 365 7.0 12.0 9.5 5.9 430 chr3L 16797014 intron CG9674 - chr3L 16797229 intron CG9674 - chr3L 16797444 intron CG9674 - chr3L_62_16795001 chr3L_16795001 RAL-303_100b 3348 chr3L 16808014 16808072 chr3L 16808115 16808176 38 99 9.0 3.5 6.2 5.3 162 chr3L 16808014 intron nudC + chr3L 16808095 intron nudC + chr3L 16808176 intron nudC + chr3L_38_16805001 chr3L_16805001 RAL-303_100b 3349 chr3L 16844999 16845044 chr3L 16845137 16845177 33 135 8.5 15.5 12.0 2.5 178 chr3L 16844999 intergenic CG9669 -,CG9715 +,TSG101 + chr3L 16845088 intergenic CG9669 -,CG9715 + chr3L 16845177 intergenic CG9669 -,CG9715 + chr3L_33_16845001 chr3L_16845001 RAL-303_100b 3350 chr3L 16861003 16861054 chr3L 16861130 16861181 54 126 16.5 19.0 17.8 2.9 178 chr3L 16861003 intron,exon Rh4 -,CG13029 + chr3L 16861092 intron,intron Rh4 -,CG13029 + chr3L 16861181 intron,exon Rh4 -,CG13029 + chr3L_54_16860001 chr3L_16860001 RAL-303_100b 3351 chr3L 16866189 16866222 chr3L 16866302 16866328 18 115 15.0 1.5 8.2 2.0 139 chr3L 16866189 intron Lmpt + chr3L 16866258 intron Lmpt + chr3L 16866328 intron Lmpt + chr3L_18_16865001 chr3L_16865001 RAL-303_100b 3352 chr3L 16866234 16866239 chr3L 16866320 16866354 6 110 7.5 7.0 7.2 0.7 120 chr3L 16866234 intron Lmpt + chr3L 16866294 intron Lmpt + chr3L 16866354 intron Lmpt + chr3L_6_16865001 chr3L_16865001 RAL-303_100b 3353 chr3L 16867547 16867569 chr3L 16867645 16867672 12 101 13.5 33.5 23.5 0.5 125 chr3L 16867547 intron Lmpt + chr3L 16867610 intron Lmpt + chr3L 16867672 intron Lmpt + chr3L_12_16865001 chr3L_16865001 RAL-303_100b 3354 chr3L 16873317 16873367 chr3L 16873447 16873497 31 129 18.0 19.5 18.8 1.6 180 chr3L 16873317 intron Lmpt + chr3L 16873407 intron Lmpt + chr3L 16873497 intron Lmpt + chr3L_31_16870001 chr3L_16870001 RAL-303_100b 3355 chr3L 16875348 16875360 chr3L 16875519 16875531 8 171 5.5 8.0 6.8 1.0 183 chr3L 16875348 intron Lmpt + chr3L 16875440 intron Lmpt + chr3L 16875531 intron Lmpt + chr3L_8_16875001 chr3L_16875001 RAL-303_100b 3356 chr3L 16894940 16894995 chr3L 16895050 16895105 53 108 11.5 16.0 13.8 3.6 165 chr3L 16894940 intron Lmpt + chr3L 16895022 intron Lmpt + chr3L 16895105 intron Lmpt + chr3L_53_16895001 chr3L_16895001 RAL-303_100b 3357 chr3L 16941381 16941398 chr3L 16941507 16941524 16 126 33.0 0.5 16.8 0.9 143 chr3L 16941381 intron Cpr73D - chr3L 16941452 intron Cpr73D - chr3L 16941524 intron Cpr73D - chr3L_16_16940001 chr3L_16940001 RAL-303_100b 3358 chr3L 16941399 16941405 chr3L 16941504 16941531 9 124 29.0 0.5 14.8 0.6 132 chr3L 16941399 intron Cpr73D - chr3L 16941465 intron Cpr73D - chr3L 16941531 intron Cpr73D - chr3L_9_16940001 chr3L_16940001 RAL-303_100b 3359 chr3L 16941407 16941434 chr3L 16941502 16941540 9 120 14.0 0.5 7.2 1.1 133 chr3L 16941407 intron Cpr73D - chr3L 16941474 intron Cpr73D - chr3L 16941540 intron Cpr73D - chr3L_9_16940001 chr3L_16940001 RAL-303_100b 3360 chr3L 16945700 16945760 chr3L 16954878 16954918 roo 60 9166 28.0 12.0 20.0 2.9 9218 chr3L 16945700 exon Obp73a + chr3L 16950309 intergenic not near genes chr3L 16954918 5` UTR Nc73EF + chr3L_60_16950001 chr3L_16950001 RAL-303_100b 3361 chr3L 17026776 17026783 chr3L 17026874 17026889 5 104 46.0 21.5 33.8 0.1 113 chr3L 17026776 exon Fit2 + chr3L 17026832 3` UTR Fit2 + chr3L 17026889 3` UTR Fit2 + chr3L_5_17025001 chr3L_17025001 RAL-303_100b 3362 chr3L 17026785 17026824 chr3L 17026870 17026922 34 101 16.5 20.5 18.5 1.7 137 chr3L 17026785 exon Fit2 + chr3L 17026854 3` UTR Fit2 + chr3L 17026922 3` UTR Fit2 + chr3L_34_17025001 chr3L_17025001 RAL-303_100b 3363 chr3L 17027151 17027187 chr3L 17027258 17027304 44 116 7.5 12.5 10.0 4.0 153 chr3L 17027151 intergenic Fit2 +,CG7730 + chr3L 17027228 intergenic Fit2 +,CG7730 + chr3L 17027304 intergenic Fit2 +,CG7730 + chr3L_44_17025001 chr3L_17025001 RAL-303_100b 3364 chr3L 17034910 17034961 chr3L 17035123 17035174 G2 22 212 3.5 14.5 9.0 2.2 264 chr3L 17034910 intergenic not near genes chr3L 17035042 intergenic not near genes chr3L 17035174 intergenic beg + chr3L_22_17035001 chr3L_17035001 RAL-303_100b 3365 chr3L 17084979 17085034 chr3L 17094153 17094208 roo 53 9173 22.0 18.5 20.2 2.5 9229 chr3L 17084979 intron Rbp6 - chr3L 17089594 intron Rbp6 - chr3L 17094208 intron Rbp6 - chr3L_53_17085001 chr3L_17085001 RAL-303_100b 3366 chr3L 17104979 17105012 chr3L 17105081 17105100 22 96 14.5 32.5 23.5 0.9 121 chr3L 17104979 intron Rbp6 - chr3L 17105040 intron Rbp6 - chr3L 17105100 intron Rbp6 - chr3L_22_17105001 chr3L_17105001 RAL-303_100b 3367 chr3L 17107339 17107353 chr3L 17107438 17107461 8 104 30.0 21.5 25.8 0.3 122 chr3L 17107339 intron Rbp6 - chr3L 17107400 intron Rbp6 - chr3L 17107461 intron Rbp6 - chr3L_8_17105001 chr3L_17105001 RAL-303_100b 3368 chr3L 17107355 17107379 chr3L 17107436 17107463 17 101 15.0 20.0 17.5 0.9 108 chr3L 17107355 intron Rbp6 - chr3L 17107409 intron Rbp6 - chr3L 17107463 intron Rbp6 - chr3L_17_17105001 chr3L_17105001 RAL-303_100b 3369 chr3L 17117117 17117121 chr3L 17117208 17117231 5 106 5.5 26.0 15.8 0.3 114 chr3L 17117117 intron Rbp6 - chr3L 17117174 intron Rbp6 - chr3L 17117231 intron Rbp6 - chr3L_5_17115001 chr3L_17115001 RAL-303_100b 3370 chr3L 17117123 17117123 chr3L 17117204 17117233 5 100 5.0 22.5 13.8 0.3 110 chr3L 17117123 intron Rbp6 - chr3L 17117178 intron Rbp6 - chr3L 17117233 intron Rbp6 - chr3L_5_17115001 chr3L_17115001 RAL-303_100b 3371 chr3L 17117124 17117132 chr3L 17117186 17117242 14 102 1.0 13.0 7.0 1.8 118 chr3L 17117124 intron Rbp6 - chr3L 17117183 intron Rbp6 - chr3L 17117242 intron Rbp6 - chr3L_14_17115001 chr3L_17115001 RAL-303_100b 3372 chr3L 17135580 17135604 chr3L 17135702 17135726 10 122 6.5 20.5 13.5 0.7 146 chr3L 17135580 intron Rbp6 - chr3L 17135653 intron Rbp6 - chr3L 17135726 intron Rbp6 - chr3L_10_17135001 chr3L_17135001 RAL-303_100b 3373 chr3L 17149139 17149165 chr3L 17149245 17149255 19 104 30.5 0.0 15.2 1.2 116 chr3L 17149139 intron Rbp6 - chr3L 17149197 intron Rbp6 - chr3L 17149255 intron Rbp6 - chr3L_19_17145001 chr3L_17145001 RAL-303_100b 3374 chr3L 17157606 17157619 chr3L 17157764 17157777 6 158 20.0 43.5 31.8 0.2 171 chr3L 17157606 intron Rbp6 - chr3L 17157692 intron Rbp6 - chr3L 17157777 intron Rbp6 - chr3L_6_17155001 chr3L_17155001 RAL-303_100b 3375 chr3L 17184480 17184540 chr3L 17184950 17185010 43 467 7.5 11.0 9.2 4.2 530 chr3L 17184480 intron Rbp6 - chr3L 17184745 intron Rbp6 - chr3L 17185010 intron Rbp6 - chr3L_43_17180001 chr3L_17180001 RAL-303_100b 3376 chr3L 17194442 17194445 chr3L 17194518 17194524 4 94 9.5 33.5 21.5 0.2 82 chr3L 17194442 intron Rbp6 - chr3L 17194483 intron Rbp6 - chr3L 17194524 intron Rbp6 - chr3L_4_17190001 chr3L_17190001 RAL-303_100b 3377 chr3L 17265312 17265333 chr3L 17265388 17265437 29 97 3.5 16.5 10.0 2.6 125 chr3L 17265312 intergenic CG13723 + chr3L 17265374 intergenic CG13723 + chr3L 17265437 intergenic CG13723 + chr3L_29_17265001 chr3L_17265001 RAL-303_100b 3378 chr3L 17310043 17310088 chr3L 17310158 17310191 14 115 0.0 5.0 2.5 4.0 148 chr3L 17310043 intergenic not near genes chr3L 17310117 intergenic not near genes chr3L 17310191 intergenic not near genes chr3L_14_17310001 chr3L_17310001 RAL-303_100b 3379 chr3L 17321692 17321693 chr3L 17321802 17321803 4 110 53.5 21.0 37.2 0.1 111 chr3L 17321692 intergenic not near genes chr3L 17321748 intergenic not near genes chr3L 17321803 intergenic not near genes chr3L_4_17320001 chr3L_17320001 RAL-303_100b 3380 chr3L 17321697 17321704 chr3L 17321801 17321814 10 107 48.5 19.5 34.0 0.3 117 chr3L 17321697 intergenic not near genes chr3L 17321756 intergenic not near genes chr3L 17321814 intergenic not near genes chr3L_10_17320001 chr3L_17320001 RAL-303_100b 3381 chr3L 17321705 17321747 chr3L 17321800 17321825 59 103 20.5 19.0 19.8 2.8 120 chr3L 17321705 intergenic not near genes chr3L 17321765 intergenic not near genes chr3L 17321825 intergenic not near genes chr3L_59_17320001 chr3L_17320001 RAL-303_100b 3382 chr3L 17367410 17367459 chr3L 17367529 17367578 45 118 11.0 9.5 10.2 4.0 168 chr3L 17367410 intergenic CR45688 +,Cad74A - chr3L 17367494 intergenic CR45688 +,Cad74A - chr3L 17367578 intergenic Cad74A -,CR45688 + chr3L_45_17365001 chr3L_17365001 RAL-303_100b 3383 chr3L 12462304 12462305 chr3L 17395609 17395610 5 4933305 31.0 59.0 45.0 0.1 4933306 chr3L 12462304 intergenic eyg - chr3L 14928957 intron DCX-EMAP + chr3L 17395610 intergenic blot - chr3L_5_14925001 chr3L_14925001 RAL-303_100b 3384 chr3L 17461995 17461998 chr3L 17462165 17462168 6 170 19.0 12.5 15.8 0.4 173 chr3L 17461995 intergenic not near genes chr3L 17462082 intergenic not near genes chr3L 17462168 intergenic not near genes chr3L_6_17460001 chr3L_17460001 RAL-303_100b 3385 chr3L 17510719 17510765 chr3L 17510828 17510874 58 107 12.5 16.0 14.2 3.8 155 chr3L 17510719 exon Oatp74D + chr3L 17510796 intron Oatp74D + chr3L 17510874 intron Oatp74D + chr3L_58_17510001 chr3L_17510001 RAL-303_100b 3386 chr3L 17516953 17517012 chr3L 17524536 17524563 412 47 7578 16.0 13.0 14.5 3.0 7610 chr3L 17516953 intron CG7564 + chr3L 17520758 intron CG7564 + chr3L 17524563 3` UTR CG7564 + chr3L_47_17520001 chr3L_17520001 RAL-303_100b 3387 chr3L 17569518 17569541 chr3L 17569622 17569646 15 103 27.0 13.5 20.2 0.7 128 chr3L 17569518 intron Eip74EF - chr3L 17569582 intron Eip74EF - chr3L 17569646 intron Eip74EF - chr3L_15_17565001 chr3L_17565001 RAL-303_100b 3388 chr3L 17569542 17569574 chr3L 17569621 17569641 17 95 7.5 13.0 10.2 1.5 99 chr3L 17569542 intron Eip74EF - chr3L 17569592 intron Eip74EF - chr3L 17569641 intron Eip74EF - chr3L_17_17565001 chr3L_17565001 RAL-303_100b 3389 chr3L 17691953 17691992 chr3L 17692062 17692101 38 109 17.5 12.5 15.0 2.4 148 chr3L 17691953 intron Ccn + chr3L 17692027 intron Ccn + chr3L 17692101 intron Ccn + chr3L_38_17690001 chr3L_17690001 RAL-303_100b 3390 chr3L 17730824 17730880 chr3L 17738179 17738235 mdg1 42 7353 7.0 20.0 13.5 2.9 7411 chr3L 17730824 intron Ccn + chr3L 17734530 intron Ccn + chr3L 17738235 intron Ccn + chr3L_42_17730001 chr3L_17730001 RAL-303_100b 3391 chr3L 17753329 17753358 chr3L 17753440 17753469 32 109 14.5 14.5 14.5 2.1 140 chr3L 17753329 intron Adgf-A - chr3L 17753399 intron Adgf-A - chr3L 17753469 exon Adgf-A - chr3L_32_17750001 chr3L_17750001 RAL-303_100b 3392 chr3L 17789820 17789875 chr3L 17789921 17789976 52 100 10.5 12.0 11.2 4.3 156 chr3L 17789820 intergenic not near genes chr3L 17789898 intergenic not near genes chr3L 17789976 intergenic not near genes chr3L_52_17785001 chr3L_17785001 RAL-303_100b 3393 chr3L 17790594 17790636 chr3L 17790884 17790926 47 288 14.5 11.5 13.0 3.4 332 chr3L 17790594 intergenic CG42815 - chr3L 17790760 intergenic CG42815 - chr3L 17790926 intergenic CG42815 - chr3L_47_17790001 chr3L_17790001 RAL-303_100b 3394 chr3L 17791916 17791921 chr3L 17792018 17792023 8 102 12.0 8.0 10.0 0.7 107 chr3L 17791916 intergenic CG42816 -,CG42815 - chr3L 17791970 intergenic CG42816 -,CG42815 - chr3L 17792023 intergenic CG42816 - chr3L_8_17790001 chr3L_17790001 RAL-303_100b 3395 chr3L 17799785 17799841 chr3L 17801597 17801653 S-element 48 1811 13.0 10.5 11.8 3.8 1868 chr3L 17799785 intron NUCB1 - chr3L 17800719 intron NUCB1 - chr3L 17801653 intron NUCB1 - chr3L_48_17800001 chr3L_17800001 RAL-303_100b 3396 chr3L 17884675 17884710 chr3L 17884800 17884835 27 124 9.5 10.5 10.0 2.5 160 chr3L 17884675 intergenic CG5506 - chr3L 17884755 intergenic CG5506 - chr3L 17884835 intergenic CG5506 - chr3L_27_17880001 chr3L_17880001 RAL-303_100b 3397 chr3L 17887853 17887877 chr3L 17887963 17887987 17 109 5.0 21.0 13.0 1.2 134 chr3L 17887853 intron CG7402 + chr3L 17887920 intron CG7402 + chr3L 17887987 intron CG7402 + chr3L_17_17885001 chr3L_17885001 RAL-303_100b 3398 chr3L 17918350 17918366 chr3L 17921178 17921194 opus 5 2828 25.0 12.0 18.5 0.3 2844 chr3L 17918350 intergenic not near genes chr3L 17919772 intergenic not near genes chr3L 17921194 intergenic not near genes chr3L_5_17915001 chr3L_17915001 RAL-303_100b 3399 chr3L 17918367 17918402 chr3L 17921175 17921175 opus 13 2820 11.5 11.5 11.5 1.0 2808 chr3L 17918367 intergenic not near genes chr3L 17919771 intergenic not near genes chr3L 17921175 intergenic not near genes chr3L_13_17915001 chr3L_17915001 RAL-303_100b 3400 chr3L 17987773 17987830 chr3L 17987924 17987981 39 142 13.5 15.5 14.5 2.5 208 chr3L 17987773 intron Eip75B - chr3L 17987877 intron Eip75B - chr3L 17987981 intron Eip75B - chr3L_39_17985001 chr3L_17985001 RAL-303_100b 3401 chr3L 17991552 17991557 chr3L 17991655 17991660 7 103 38.0 18.5 28.2 0.2 108 chr3L 17991552 intron Eip75B - chr3L 17991606 intron Eip75B - chr3L 17991660 intron Eip75B - chr3L_7_17990001 chr3L_17990001 RAL-303_100b 3402 chr3L 17991558 17991588 chr3L 17991648 17991691 33 101 22.5 17.5 20.0 1.6 133 chr3L 17991558 intron Eip75B - chr3L 17991624 intron Eip75B - chr3L 17991691 intron Eip75B - chr3L_33_17990001 chr3L_17990001 RAL-303_100b 3403 chr3L 18026259 18026316 chr3L 18026372 18026429 50 112 10.5 12.0 11.2 4.1 170 chr3L 18026259 intron Eip75B - chr3L 18026344 intron Eip75B - chr3L 18026429 intron Eip75B - chr3L_50_18025001 chr3L_18025001 RAL-303_100b 3404 chr3L 18029936 18029987 chr3L 18030036 18030059 21 100 11.5 0.5 6.0 3.0 123 chr3L 18029936 intron Eip75B - chr3L 18029998 intron Eip75B - chr3L 18030059 intron Eip75B - chr3L_21_18030001 chr3L_18030001 RAL-303_100b 3405 chr3L 18047683 18047741 chr3L 18056764 18056823 roo 42 9079 7.5 9.5 8.5 4.4 9140 chr3L 18047683 intron Eip75B - chr3L 18052253 intron Eip75B - chr3L 18056823 intron Eip75B - chr3L_42_18050001 chr3L_18050001 RAL-303_100b 3406 chr3L 18064039 18064077 chr3L 18064150 18064186 21 108 4.0 8.5 6.2 2.9 147 chr3L 18064039 intron Eip75B - chr3L 18064112 intron Eip75B - chr3L 18064186 intron Eip75B - chr3L_21_18060001 chr3L_18060001 RAL-303_100b 3407 chr3L 18075218 18075253 chr3L 18075508 18075543 32 289 18.0 13.5 15.8 1.9 325 chr3L 18075218 intergenic not near genes chr3L 18075380 intergenic not near genes chr3L 18075543 intergenic not near genes chr3L_32_18075001 chr3L_18075001 RAL-303_100b 3408 chr3L 18092756 18092804 chr3L 18092896 18092926 32 137 14.0 0.0 7.0 4.0 170 chr3L 18092756 intron CG13698 - chr3L 18092841 intron CG13698 - chr3L 18092926 intron CG13698 - chr3L_32_18090001 chr3L_18090001 RAL-303_100b 3409 chr3L 12041211 12041214 chr3L 18096916 18096918 5 6055704 46.5 15.0 30.8 0.2 6055707 chr3L 12041211 intron rols - chr3L 15069064 exon cp309 - chr3L 18096918 intron CG13698 - chr3L_5_15065001 chr3L_15065001 RAL-303_100b 3410 chr3L 18106227 18106277 chr3L 18106371 18106411 31 143 9.5 0.0 4.8 5.3 184 chr3L 18106227 intergenic CG13698 -,mRpS26 + chr3L 18106319 intergenic CG13698 -,mRpS26 + chr3L 18106411 intergenic mRpS26 +,CG13698 - chr3L_31_18105001 chr3L_18105001 RAL-303_100b 3411 chr3L 18107591 18107642 chr3L 18107709 18107755 47 118 13.5 14.0 13.8 3.2 164 chr3L 18107591 intergenic mRpS26 +,CG5147 - chr3L 18107673 intergenic mRpS26 +,CG5147 - chr3L 18107755 intergenic CG5147 -,mRpS26 + chr3L_47_18105001 chr3L_18105001 RAL-303_100b 3412 chr3L 18107645 18107649 chr3L 18107707 18107741 4 98 11.0 12.5 11.8 0.3 96 chr3L 18107645 intergenic mRpS26 +,CG5147 - chr3L 18107693 intergenic CG5147 -,mRpS26 + chr3L 18107741 intergenic CG5147 -,mRpS26 + chr3L_4_18105001 chr3L_18105001 RAL-303_100b 3413 chr3L 18118187 18118239 chr3L 18118290 18118342 48 101 8.0 12.0 10.0 4.4 155 chr3L 18118187 3` UTR,intron CG32195 +,CG7341 + chr3L 18118264 3` UTR,intron CG32195 +,CG7341 + chr3L 18118342 3` UTR,intron CG32195 +,CG7341 + chr3L_48_18115001 chr3L_18115001 RAL-303_100b 3414 chr3L 18136666 18136686 chr3L 18136768 18136789 21 102 0.0 17.0 8.5 2.2 123 chr3L 18136666 intergenic CR44669 - chr3L 18136728 intergenic CR44669 - chr3L 18136789 intergenic not near genes chr3L_21_18135001 chr3L_18135001 RAL-303_100b 3415 chr3L 18163956 18164241 chr3L 18164183 18164433 37 206 0.0 0.5 0.2 30.8 477 chr3L 18163956 intergenic not near genes chr3L 18164194 intergenic not near genes chr3L 18164433 intergenic not near genes chr3L_37_18160001 chr3L_18160001 RAL-303_100b 3416 chr3L 18172667 18172671 chr3L 18172768 18172772 4 101 40.5 0.0 20.2 0.2 105 chr3L 18172667 intron W - chr3L 18172720 intron W - chr3L 18172772 intron W - chr3L_4_18170001 chr3L_18170001 RAL-303_100b 3417 chr3L 18189562 18189585 chr3L 18190214 18190237 S-element 20 651 22.0 9.0 15.5 1.2 675 chr3L 18189562 intergenic not near genes chr3L 18189900 intergenic not near genes chr3L 18190237 intergenic not near genes chr3L_20_18185001 chr3L_18185001 RAL-303_100b 3418 chr3L 18198929 18198934 chr3L 24821492 24821492 13 6622563 58.5 64.0 61.2 0.2 6622563 chr3L 18198929 intergenic not near genes chr3L 21510210 intron M6 + chr3L 24821492 intergenic not near genes chr3L_13_21510001 chr3L_21510001 RAL-303_100b 3419 chr3L 18207891 18207905 chr3L 18207999 18208015 13 109 11.0 0.0 5.5 2.0 124 chr3L 18207891 intergenic not near genes chr3L 18207953 intergenic not near genes chr3L 18208015 intergenic not near genes chr3L_13_18205001 chr3L_18205001 RAL-303_100b 3420 chr3L 18210728 18210746 chr3L 18210824 18210847 19 100 0.0 15.5 7.8 2.2 119 chr3L 18210728 intergenic not near genes chr3L 18210788 intergenic not near genes chr3L 18210847 intergenic not near genes chr3L_19_18210001 chr3L_18210001 RAL-303_100b 3421 chr3L 18210747 18210748 chr3L 18210822 18210849 5 93 0.0 14.5 7.2 0.6 102 chr3L 18210747 intergenic not near genes chr3L 18210798 intergenic not near genes chr3L 18210849 intergenic not near genes chr3L_5_18210001 chr3L_18210001 RAL-303_100b 3422 chr3L 18220216 18220228 chr3L 18220636 18220648 10 420 11.0 14.5 12.8 0.7 432 chr3L 18220216 intergenic not near genes chr3L 18220432 intergenic not near genes chr3L 18220648 intergenic not near genes chr3L_10_18220001 chr3L_18220001 RAL-303_100b 3423 chr3L 18223140 18223186 chr3L 18223248 18223306 29 111 10.5 0.5 5.5 4.5 166 chr3L 18223140 intergenic not near genes chr3L 18223223 intergenic not near genes chr3L 18223306 intergenic not near genes chr3L_29_18220001 chr3L_18220001 RAL-303_100b 3424 chr3L 18226660 18226668 chr3L 18226776 18226784 9 116 4.5 10.5 7.5 1.1 124 chr3L 18226660 intergenic not near genes chr3L 18226722 intergenic not near genes chr3L 18226784 intergenic not near genes chr3L_9_18225001 chr3L_18225001 RAL-303_100b 3425 chr3L 18248934 18248985 chr3L 18249052 18249108 48 120 14.0 13.5 13.8 3.2 174 chr3L 18248934 intergenic not near genes chr3L 18249021 intergenic not near genes chr3L 18249108 intergenic not near genes chr3L_48_18245001 chr3L_18245001 RAL-303_100b 3426 chr3L 18262450 18262487 chr3L 18262558 18262595 23 108 8.5 10.0 9.2 2.3 145 chr3L 18262450 intergenic not near genes chr3L 18262522 intergenic not near genes chr3L 18262595 intergenic not near genes chr3L_23_18260001 chr3L_18260001 RAL-303_100b 3427 chr3L 18311767 18311778 chr3L 18311878 18311886 6 110 5.0 17.0 11.0 0.5 119 chr3L 18311767 intergenic not near genes chr3L 18311826 intergenic not near genes chr3L 18311886 intergenic not near genes chr3L_6_18310001 chr3L_18310001 RAL-303_100b 3428 chr3L 18311779 18311822 chr3L 18311874 18311893 43 107 4.5 14.5 9.5 4.1 114 chr3L 18311779 intergenic not near genes chr3L 18311836 intergenic not near genes chr3L 18311893 intergenic not near genes chr3L_43_18310001 chr3L_18310001 RAL-303_100b 3429 chr3L 18329352 18329408 chr3L 18329457 18329507 44 99 11.0 12.5 11.8 3.4 155 chr3L 18329352 intergenic not near genes chr3L 18329430 intergenic not near genes chr3L 18329507 intergenic not near genes chr3L_44_18325001 chr3L_18325001 RAL-303_100b 3430 chr3L 18343669 18343679 chr3L 18343972 18343982 11 303 7.0 27.0 17.0 0.6 313 chr3L 18343669 intergenic not near genes chr3L 18343826 intergenic not near genes chr3L 18343982 intergenic not near genes chr3L_11_18340001 chr3L_18340001 RAL-303_100b 3431 chr3L 18359571 18359627 chr3L 18359688 18359744 38 116 13.5 6.0 9.8 3.5 173 chr3L 18359571 intergenic not near genes chr3L 18359658 intergenic not near genes chr3L 18359744 intergenic not near genes chr3L_38_18355001 chr3L_18355001 RAL-303_100b 3432 chr3L 18386877 18386882 chr3L 18386981 18386987 7 105 0.0 17.0 8.5 0.7 110 chr3L 18386877 intergenic not near genes chr3L 18386932 intergenic not near genes chr3L 18386987 intergenic not near genes chr3L_7_18385001 chr3L_18385001 RAL-303_100b 3433 chr3L 9013690 9013694 chr3L 18417066 18417066 9 9403375 85.0 68.5 76.8 0.1 9403376 chr3L 9013690 intron Doc2 - chr3L 13715378 intron bru-3 - chr3L 18417066 intergenic not near genes chr3L_9_13715001 chr3L_13715001 RAL-303_100b 3434 chr3L 18436036 18436090 chr3L 18436159 18436208 27 120 8.5 7.5 8.0 3.0 172 chr3L 18436036 intergenic not near genes chr3L 18436122 intergenic not near genes chr3L 18436208 intergenic not near genes chr3L_27_18435001 chr3L_18435001 RAL-303_100b 3435 chr3L 18448599 18448618 chr3L 18448716 18448735 18 117 21.0 15.0 18.0 0.9 136 chr3L 18448599 intergenic not near genes chr3L 18448667 intergenic not near genes chr3L 18448735 intergenic not near genes chr3L_18_18445001 chr3L_18445001 RAL-303_100b 3436 chr3L 18506098 18506155 chr3L 18509596 18509653 F-element 45 3496 17.0 11.5 14.2 3.0 3555 chr3L 18506098 intergenic not near genes chr3L 18507876 intergenic not near genes chr3L 18509653 intergenic not near genes chr3L_45_18505001 chr3L_18505001 RAL-303_100b 3437 chr3L 18528610 18528623 chr3L 18537790 18537809 roo 15 9185 36.5 16.0 26.2 0.6 9199 chr3L 18528610 intergenic not near genes chr3L 18533210 intergenic not near genes chr3L 18537809 intergenic not near genes chr3L_15_18530001 chr3L_18530001 RAL-303_100b 3438 chr3L 18528626 18528658 chr3L 18537788 18537844 roo 31 9184 16.0 14.5 15.2 1.9 9218 chr3L 18528626 intergenic not near genes chr3L 18533235 intergenic not near genes chr3L 18537844 intergenic not near genes chr3L_31_18530001 chr3L_18530001 RAL-303_100b 3439 chr3L 18581329 18581366 chr3L 18581430 18581467 24 101 14.0 18.5 16.2 1.4 138 chr3L 18581329 intergenic not near genes chr3L 18581398 intergenic not near genes chr3L 18581467 intergenic not near genes chr3L_24_18580001 chr3L_18580001 RAL-303_100b 3440 chr3L 18593926 18593981 chr3L 18595925 18595989 Doc 33 2002 10.5 4.5 7.5 3.9 2063 chr3L 18593926 intergenic term - chr3L 18594958 intergenic not near genes chr3L 18595989 intergenic CR45389 + chr3L_33_18590001 chr3L_18590001 RAL-303_100b 3441 chr3L 18638558 18638576 chr3L 18638677 18638695 13 119 25.0 9.0 17.0 0.7 137 chr3L 18638558 intron MYPT-75D + chr3L 18638626 intron MYPT-75D + chr3L 18638695 intron MYPT-75D + chr3L_13_18635001 chr3L_18635001 RAL-303_100b 3442 chr3L 18638579 18638608 chr3L 18638673 18638727 29 115 10.0 6.5 8.2 3.2 148 chr3L 18638579 intron MYPT-75D + chr3L 18638653 intron MYPT-75D + chr3L 18638727 intron MYPT-75D + chr3L_29_18635001 chr3L_18635001 RAL-303_100b 3443 chr3L 18647670 18647699 chr3L 18647788 18647792 10 114 10.0 8.5 9.2 1.0 122 chr3L 18647670 intron MYPT-75D + chr3L 18647731 intron MYPT-75D + chr3L 18647792 intron MYPT-75D + chr3L_10_18645001 chr3L_18645001 RAL-303_100b 3444 chr3L 18653057 18653071 chr3L 18653206 18653219 12 148 0.0 24.5 12.2 0.9 162 chr3L 18653057 intron MYPT-75D + chr3L 18653138 intron MYPT-75D + chr3L 18653219 intron MYPT-75D + chr3L_12_18650001 chr3L_18650001 RAL-303_100b 3445 chr3L 18678539 18678546 chr3L 18678756 18678799 9 247 0.5 23.5 12.0 0.7 260 chr3L 18678539 intergenic not near genes chr3L 18678669 intergenic not near genes chr3L 18678799 intergenic not near genes chr3L_9_18675001 chr3L_18675001 RAL-303_100b 3446 chr3L 18685515 18685570 chr3L 18685626 18685663 35 109 14.5 19.0 16.8 2.0 148 chr3L 18685515 exon Cyp12c1 - chr3L 18685589 exon Cyp12c1 - chr3L 18685663 exon Cyp12c1 - chr3L_35_18685001 chr3L_18685001 RAL-303_100b 3447 chr3L 18688144 18688160 chr3L 18688264 18688280 16 120 22.5 28.5 25.5 0.6 136 chr3L 18688144 intergenic not near genes chr3L 18688212 intergenic not near genes chr3L 18688280 intergenic not near genes chr3L_16_18685001 chr3L_18685001 RAL-303_100b 3448 chr3L 18710737 18710791 chr3L 18718714 18718758 Stalker2 44 7976 10.0 9.0 9.5 4.2 8021 chr3L 18710737 intergenic not near genes chr3L 18714748 intergenic not near genes chr3L 18718758 intergenic not near genes chr3L_44_18710001 chr3L_18710001 RAL-303_100b 3449 chr3L 18753523 18753566 chr3L 18753629 18753673 16 107 6.0 7.5 6.8 2.1 150 chr3L 18753523 intron ftz-f1 - chr3L 18753598 intron ftz-f1 - chr3L 18753673 intron ftz-f1 - chr3L_16_18750001 chr3L_18750001 RAL-303_100b 3450 chr3L 18772382 18772436 chr3L 18781088 18781142 roo 63 8705 16.5 19.0 17.8 3.4 8760 chr3L 18772382 intron ftz-f1 - chr3L 18776762 intron ftz-f1 - chr3L 18781142 intron ftz-f1 - chr3L_63_18775001 chr3L_18775001 RAL-303_100b 3451 chr3L 18784371 18784402 chr3L 18784485 18784516 19 112 7.5 11.5 9.5 1.8 145 chr3L 18784371 intron ftz-f1 - chr3L 18784444 intron ftz-f1 - chr3L 18784516 intron ftz-f1 - chr3L_19_18780001 chr3L_18780001 RAL-303_100b 3452 chr3L 18795386 18795404 chr3L 18795494 18795512 7 104 24.0 10.0 17.0 0.4 126 chr3L 18795386 intron ftz-f1 - chr3L 18795449 intron ftz-f1 - chr3L 18795512 intron ftz-f1 - chr3L_7_18795001 chr3L_18795001 RAL-303_100b 3453 chr3L 18795406 18795444 chr3L 18795492 18795552 30 101 9.5 10.0 9.8 2.8 146 chr3L 18795406 intron ftz-f1 - chr3L 18795479 intron ftz-f1 - chr3L 18795552 intron ftz-f1 - chr3L_30_18795001 chr3L_18795001 RAL-303_100b 3454 chr3L 18797294 18797338 chr3L 18797396 18797447 30 108 9.5 16.0 12.8 2.2 153 chr3L 18797294 intron ftz-f1 - chr3L 18797370 intron ftz-f1 - chr3L 18797447 intron ftz-f1 - chr3L_30_18795001 chr3L_18795001 RAL-303_100b 3455 chr3L 18820857 18820904 chr3L 18821061 18821108 34 203 9.0 13.5 11.2 2.8 251 chr3L 18820857 intergenic CG14073 -,HipHop + chr3L 18820982 intergenic HipHop +,CG14073 - chr3L 18821108 intergenic HipHop +,CG14073 - chr3L_34_18820001 chr3L_18820001 RAL-303_100b 3456 chr3L 18853982 18854024 chr3L 18854108 18854150 15 125 7.5 4.0 5.8 2.2 168 chr3L 18853982 intergenic CR45387 + chr3L 18854066 intergenic CR45387 + chr3L 18854150 intergenic CR45387 + chr3L_15_18850001 chr3L_18850001 RAL-303_100b 3457 chr3L 18863957 18863965 chr3L 18864067 18864069 4 108 7.5 0.0 3.8 0.8 112 chr3L 18863957 intron CG6865 + chr3L 18864013 intron CG6865 + chr3L 18864069 intron CG6865 + chr3L_4_18860001 chr3L_18860001 RAL-303_100b 3458 chr3L 18868937 18868955 chr3L 18869064 18869082 15 126 28.5 16.0 22.2 0.6 145 chr3L 18868937 3` UTR Dysb + chr3L 18869010 3` UTR Dysb + chr3L 18869082 3` UTR Dysb + chr3L_15_18865001 chr3L_18865001 RAL-303_100b 3459 chr3L 18868957 18868978 chr3L 18869059 18869105 27 123 19.5 14.5 17.0 1.5 148 chr3L 18868957 3` UTR Dysb + chr3L 18869031 3` UTR Dysb + chr3L 18869105 3` UTR Dysb + chr3L_27_18865001 chr3L_18865001 RAL-303_100b 3460 chr3L 18885964 18886014 chr3L 18886065 18886114 48 100 0.0 10.0 5.0 8.0 150 chr3L 18885964 intron CG3961 - chr3L 18886039 intron CG3961 - chr3L 18886114 intron CG3961 - chr3L_48_18885001 chr3L_18885001 RAL-303_100b 3461 chr3L 18887273 18887325 chr3L 18887404 18887456 28 130 8.0 7.0 7.5 3.3 183 chr3L 18887273 intron CG3961 - chr3L 18887364 intron CG3961 - chr3L 18887456 intron CG3961 - chr3L_28_18885001 chr3L_18885001 RAL-303_100b 3462 chr3L 18888230 18888289 chr3L 18888340 18888399 55 110 17.5 19.5 18.5 2.8 169 chr3L 18888230 intron CG3961 - chr3L 18888314 intron CG3961 - chr3L 18888399 intron CG3961 - chr3L_55_18885001 chr3L_18885001 RAL-303_100b 3463 chr3L 18897160 18897192 chr3L 18897268 18897300 15 108 3.5 4.0 3.8 3.1 140 chr3L 18897160 intron CG3902 - chr3L 18897230 intron CG3902 - chr3L 18897300 intron CG3902 - chr3L_15_18895001 chr3L_18895001 RAL-303_100b 3464 chr3L 18924457 18924507 chr3L 18924558 18924608 31 100 7.5 13.0 10.2 2.8 151 chr3L 18924457 intron CG32204 - chr3L 18924532 intron CG32204 - chr3L 18924608 intron CG32204 - chr3L_31_18920001 chr3L_18920001 RAL-303_100b 3465 chr3L 18933604 18933618 chr3L 18933722 18933726 14 117 36.0 15.0 25.5 0.5 122 chr3L 18933604 intron CG32204 - chr3L 18933665 intron CG32204 - chr3L 18933726 intron CG32204 - chr3L_14_18930001 chr3L_18930001 RAL-303_100b 3466 chr3L 18933622 18933661 chr3L 18933719 18933777 20 116 17.0 14.0 15.5 1.2 155 chr3L 18933622 intron CG32204 - chr3L 18933700 intron CG32204 - chr3L 18933777 intron CG32204 - chr3L_20_18930001 chr3L_18930001 RAL-303_100b 3467 chr3L 18935809 18935865 chr3L 18935923 18935979 44 113 9.5 10.0 9.8 4.1 170 chr3L 18935809 intron CG32204 - chr3L 18935894 intron CG32204 - chr3L 18935979 intron CG32204 - chr3L_44_18935001 chr3L_18935001 RAL-303_100b 3468 chr3L 18944930 18944939 chr3L 18945031 18945032 13 100 13.0 36.0 24.5 0.5 102 chr3L 18944930 intron CG32204 - chr3L 18944981 intron CG32204 - chr3L 18945032 intron CG32204 - chr3L_13_18940001 chr3L_18940001 RAL-303_100b 3469 chr3L 18969572 18969631 chr3L 18969691 18969752 73 116 11.5 15.5 13.5 5.0 180 chr3L 18969572 intergenic not near genes chr3L 18969662 intergenic not near genes chr3L 18969752 intergenic not near genes chr3L_73_18965001 chr3L_18965001 RAL-303_100b 3470 chr3L 19008816 19008876 chr3L 19009176 19009217 jockey 50 359 8.5 12.0 10.2 4.5 401 chr3L 19008816 intron nkd - chr3L 19009016 intron nkd - chr3L 19009217 intron nkd - chr3L_50_19005001 chr3L_19005001 RAL-303_100b 3471 chr3L 19015152 19015217 chr3L 19015261 19015322 21 106 0.0 8.0 4.0 4.2 170 chr3L 19015152 intron nkd - chr3L 19015237 intron nkd - chr3L 19015322 intron nkd - chr3L_21_19015001 chr3L_19015001 RAL-303_100b 3472 chr3L 19114177 19114230 chr3L 19114313 19114350 50 130 7.5 14.0 10.8 4.2 173 chr3L 19114177 intron CG14082 - chr3L 19114264 intron CG14082 - chr3L 19114350 intron CG14082 - chr3L_50_19110001 chr3L_19110001 RAL-303_100b 3473 chr3L 19117018 19117041 chr3L 19124490 19124513 mdg1 20 7471 37.0 13.0 25.0 0.8 7495 chr3L 19117018 intron CG14082 - chr3L 19120766 intron CG14082 - chr3L 19124513 intron CG14082 - chr3L_20_19120001 chr3L_19120001 RAL-303_100b 3474 chr3L 19117042 19117076 chr3L 19124489 19124548 mdg1 49 7465 12.0 13.0 12.5 3.6 7506 chr3L 19117042 intron CG14082 - chr3L 19120795 intron CG14082 - chr3L 19124548 intron CG14082 - chr3L_49_19120001 chr3L_19120001 RAL-303_100b 3475 chr3L 19127346 19127397 chr3L 19127447 19127498 39 97 19.0 15.0 17.0 2.2 152 chr3L 19127346 intron CG14082 - chr3L 19127422 intron CG14082 - chr3L 19127498 intron CG14082 - chr3L_39_19125001 chr3L_19125001 RAL-303_100b 3476 chr3L 19138127 19138144 chr3L 19138234 19138263 7 109 0.0 16.0 8.0 0.8 136 chr3L 19138127 intron CG14082 - chr3L 19138195 intron CG14082 - chr3L 19138263 intron CG14082 - chr3L_7_19135001 chr3L_19135001 RAL-303_100b 3477 chr3L 19182361 19182367 chr3L 19182467 19182472 4 106 43.5 9.0 26.2 0.1 111 chr3L 19182361 intron fz2 - chr3L 19182416 intron fz2 - chr3L 19182472 intron fz2 - chr3L_4_19180001 chr3L_19180001 RAL-303_100b 3478 chr3L 19182370 19182418 chr3L 19182466 19182518 50 103 9.0 8.0 8.5 5.3 148 chr3L 19182370 intron fz2 - chr3L 19182444 intron fz2 - chr3L 19182518 intron fz2 - chr3L_50_19180001 chr3L_19180001 RAL-303_100b 3479 chr3L 19190051 19190106 chr3L 19190152 19190208 57 96 18.5 10.0 14.2 3.8 157 chr3L 19190051 intron fz2 - chr3L 19190130 intron fz2 - chr3L 19190208 intron fz2 - chr3L_57_19190001 chr3L_19190001 RAL-303_100b 3480 chr3L 19207112 19207159 chr3L 19207866 19207913 42 751 9.5 14.0 11.8 3.3 801 chr3L 19207112 intron fz2 - chr3L 19207512 intron fz2 - chr3L 19207913 intron fz2 - chr3L_42_19205001 chr3L_19205001 RAL-303_100b 3481 chr3L 19208035 19208092 chr3L 19209434 19209481 Doc 53 1396 17.0 10.5 13.8 3.6 1446 chr3L 19208035 intron fz2 - chr3L 19208758 intron fz2 - chr3L 19209481 intron fz2 - chr3L_53_19205001 chr3L_19205001 RAL-303_100b 3482 chr3L 19220633 19220633 chr3L 22908066 22908067 32 3687434 55.5 90.0 72.8 0.4 3687434 chr3L 19220633 intron fz2 - chr3L 21064350 intron siz + chr3L 22908067 intergenic not near genes chr3L_32_21060001 chr3L_21060001 RAL-303_100b 3483 chr3L 19220634 19220635 chr3L 22908066 22908067 6 3687432 54.5 90.0 72.2 0.1 3687433 chr3L 19220634 intron fz2 - chr3L 21064350 intron siz + chr3L 22908067 intergenic not near genes chr3L_6_21060001 chr3L_21060001 RAL-303_100b 3484 chr3L 19220636 19220636 chr3L 22908065 22908067 5 3687430 53.5 90.0 71.8 0.1 3687431 chr3L 19220636 intron fz2 - chr3L 21064352 intron siz + chr3L 22908067 intergenic not near genes chr3L_5_21060001 chr3L_21060001 RAL-303_100b 3485 chr3L 19220637 19220638 chr3L 22908066 22908066 15 3687429 53.5 90.0 71.8 0.2 3687429 chr3L 19220637 intron fz2 - chr3L 21064352 intron siz + chr3L 22908066 intergenic not near genes chr3L_15_21060001 chr3L_21060001 RAL-303_100b 3486 chr3L 19265249 19265302 chr3L 19268483 19268543 63 3239 131.5 100.0 115.8 0.5 3294 chr3L 19265249 3` UTR,exon CG42374 +,CG9666 + chr3L 19266896 exon CG9629 - chr3L 19268543 intron CG9629 - chr3L_63_19265001 chr3L_19265001 RAL-303_100b 3487 chr3L 19398913 19398930 chr3L 19403655 19403672 F-element 11 4740 12.0 15.0 13.5 0.8 4759 chr3L 19398913 intron CG32206 - chr3L 19401292 intron CG32206 - chr3L 19403672 intron CG32206 - chr3L_11_19400001 chr3L_19400001 RAL-303_100b 3488 chr3L 19404952 19404960 chr3L 19405054 19405062 8 102 17.0 17.5 17.2 0.4 110 chr3L 19404952 intron CG32206 - chr3L 19405007 intron CG32206 - chr3L 19405062 intron CG32206 - chr3L_8_19405001 chr3L_19405001 RAL-303_100b 3489 chr3L 19404966 19405005 chr3L 19405052 19405107 46 99 11.0 16.0 13.5 3.2 141 chr3L 19404966 intron CG32206 - chr3L 19405036 intron CG32206 - chr3L 19405107 intron CG32206 - chr3L_46_19405001 chr3L_19405001 RAL-303_100b 3490 chr3L 19437011 19437046 chr3L 19437107 19437155 29 108 13.5 13.0 13.2 2.0 144 chr3L 19437011 intergenic not near genes chr3L 19437083 intergenic not near genes chr3L 19437155 intergenic not near genes chr3L_29_19435001 chr3L_19435001 RAL-303_100b 3491 chr3L 19439240 19439289 chr3L 19439354 19439400 13 109 8.0 15.5 11.8 1.0 160 chr3L 19439240 intergenic not near genes chr3L 19439320 intergenic not near genes chr3L 19439400 intergenic not near genes chr3L_13_19435001 chr3L_19435001 RAL-303_100b 3492 chr3L 19464310 19464321 chr3L 19464396 19464423 7 95 21.5 27.0 24.2 0.3 113 chr3L 19464310 exon CG14095 - chr3L 19464366 exon CG14095 - chr3L 19464423 exon CG14095 - chr3L_7_19460001 chr3L_19460001 RAL-303_100b 3493 chr3L 19479319 19479378 chr3L 19479422 19479481 43 100 17.0 16.0 16.5 2.5 162 chr3L 19479319 intergenic not near genes chr3L 19479400 intergenic not near genes chr3L 19479481 intergenic not near genes chr3L_43_19475001 chr3L_19475001 RAL-303_100b 3494 chr3L 19480635 19480684 chr3L 19480762 19480811 47 124 11.0 17.5 14.2 3.1 176 chr3L 19480635 intergenic not near genes chr3L 19480723 intergenic not near genes chr3L 19480811 intergenic not near genes chr3L_47_19480001 chr3L_19480001 RAL-303_100b 3495 chr3L 19493881 19493894 chr3L 19494264 19494277 13 382 30.5 18.0 24.2 0.5 396 chr3L 19493881 intron CG9449 - chr3L 19494079 intron CG9449 - chr3L 19494277 intron CG9449 - chr3L_13_19490001 chr3L_19490001 RAL-303_100b 3496 chr3L 19493895 19493930 chr3L 19494263 19494288 30 380 13.5 16.5 15.0 1.9 393 chr3L 19493895 intron CG9449 - chr3L 19494092 intron CG9449 - chr3L 19494288 intron CG9449 - chr3L_30_19490001 chr3L_19490001 RAL-303_100b 3497 chr3L 19517106 19517114 chr3L 19517230 19517238 6 124 44.0 8.5 26.2 0.2 132 chr3L 19517106 intergenic Cpr76Ba - chr3L 19517172 intergenic Cpr76Ba - chr3L 19517238 intergenic Cpr76Ba - chr3L_6_19515001 chr3L_19515001 RAL-303_100b 3498 chr3L 19517115 19517163 chr3L 19517228 19517287 22 121 15.0 8.0 11.5 1.8 172 chr3L 19517115 intergenic Cpr76Ba - chr3L 19517201 intergenic Cpr76Ba - chr3L 19517287 intergenic Cpr76Ba - chr3L_22_19515001 chr3L_19515001 RAL-303_100b 3499 chr3L 19703822 19703834 chr3L 19704001 19704013 16 179 33.0 22.5 27.8 0.6 191 chr3L 19703822 intron serp - chr3L 19703918 intron serp - chr3L 19704013 intron serp - chr3L_16_19700001 chr3L_19700001 RAL-303_100b 3500 chr3L 19703835 19703849 chr3L 19703998 19704028 22 177 26.5 20.0 23.2 0.9 193 chr3L 19703835 intron serp - chr3L 19703932 intron serp - chr3L 19704028 intron serp - chr3L_22_19700001 chr3L_19700001 RAL-303_100b 3501 chr3L 19703851 19703879 chr3L 19703995 19704058 25 177 11.5 18.5 15.0 1.6 207 chr3L 19703851 intron serp - chr3L 19703954 intron serp - chr3L 19704058 intron serp - chr3L_25_19700001 chr3L_19700001 RAL-303_100b 3502 chr3L 19820273 19820316 chr3L 19827847 19827870 412 34 7572 8.5 9.5 9.0 3.4 7597 chr3L 19820273 intron Deaf1 + chr3L 19824072 intron Deaf1 + chr3L 19827870 intron Deaf1 + chr3L_34_19820001 chr3L_19820001 RAL-303_100b 3503 chr3L 19848485 19848534 chr3L 19857700 19857722 roo 61 9212 16.0 11.5 13.8 4.1 9237 chr3L 19848485 intron Papss + chr3L 19853104 intron Papss + chr3L 19857722 intron Papss + chr3L_61_19850001 chr3L_19850001 RAL-303_100b 3504 chr3L 19861795 19861853 chr3L 19863608 19863666 S-element 37 1811 10.0 7.0 8.5 3.9 1871 chr3L 19861795 5` UTR CR45433 + chr3L 19862730 intergenic not near genes chr3L 19863666 intergenic not near genes chr3L_37_19860001 chr3L_19860001 RAL-303_100b 3505 chr3L 19899864 19899924 chr3L 19899986 19900044 58 121 10.5 11.0 10.8 4.9 180 chr3L 19899864 intron,intron Mi-2 -,Su(Tpl) - chr3L 19899954 intron,intron Mi-2 -,Su(Tpl) - chr3L 19900044 intron,intron Mi-2 -,Su(Tpl) - chr3L_58_19895001 chr3L_19895001 RAL-303_100b 3506 chr3L 19905151 19905207 chr3L 19905505 19905561 43 351 12.5 3.5 8.0 4.8 410 chr3L 19905151 intron,intron Mi-2 -,Su(Tpl) - chr3L 19905356 intron,intron Mi-2 -,Su(Tpl) - chr3L 19905561 intron,intron Mi-2 -,Su(Tpl) - chr3L_43_19905001 chr3L_19905001 RAL-303_100b 3507 chr3L 19925364 19925420 chr3L 19925519 19925579 47 154 15.0 15.5 15.2 2.9 215 chr3L 19925364 intron Grasp65 + chr3L 19925472 intron Grasp65 + chr3L 19925579 exon Grasp65 + chr3L_47_19925001 chr3L_19925001 RAL-303_100b 3508 chr3L 19933514 19933562 chr3L 19934361 19934409 48 846 13.5 13.0 13.2 3.4 895 chr3L 19933514 intergenic CR45678 + chr3L 19933962 5` UTR CR45678 + chr3L 19934409 intergenic CR45678 + chr3L_48_19930001 chr3L_19930001 RAL-303_100b 3509 chr3L 19962922 19962980 chr3L 19963025 19963058 55 97 7.0 16.0 11.5 4.4 136 chr3L 19962922 intron Ac76E + chr3L 19962990 intron Ac76E + chr3L 19963058 intron Ac76E + chr3L_55_19960001 chr3L_19960001 RAL-303_100b 3510 chr3L 19981178 19981235 chr3L 19981283 19981340 40 104 12.0 9.0 10.5 3.5 162 chr3L 19981178 intergenic not near genes chr3L 19981259 intergenic CG17732 + chr3L 19981340 intergenic CG17732 + chr3L_40_19980001 chr3L_19980001 RAL-303_100b 3511 chr3L 19992078 19992116 chr3L 19992180 19992218 49 101 29.5 30.0 29.8 1.6 140 chr3L 19992078 intron,intron CG7646 +,Nca + chr3L 19992148 intron,intron CG7646 +,Nca + chr3L 19992218 intron,intron CG7646 +,Nca + chr3L_49_19990001 chr3L_19990001 RAL-303_100b 3512 chr3L 20038793 20038853 chr3L 20038996 20039055 56 200 7.0 11.0 9.0 5.6 262 chr3L 20038793 intergenic not near genes chr3L 20038924 intergenic not near genes chr3L 20039055 intergenic not near genes chr3L_56_20035001 chr3L_20035001 RAL-303_100b 3513 chr3L 20057535 20057590 chr3L 20057673 20057728 58 136 16.5 20.0 18.2 3.0 193 chr3L 20057535 intergenic not near genes chr3L 20057632 intergenic not near genes chr3L 20057728 intergenic not near genes chr3L_58_20055001 chr3L_20055001 RAL-303_100b 3514 chr3L 20081717 20081769 chr3L 20081825 20081877 56 106 11.5 14.0 12.8 4.1 160 chr3L 20081717 intron sNPF-R - chr3L 20081797 intron sNPF-R - chr3L 20081877 intron sNPF-R - chr3L_56_20080001 chr3L_20080001 RAL-303_100b 3515 chr3L 20096060 20096118 chr3L 20096189 20096225 36 124 9.0 1.0 5.0 6.0 165 chr3L 20096060 intergenic not near genes chr3L 20096142 intergenic not near genes chr3L 20096225 intergenic not near genes chr3L_36_20095001 chr3L_20095001 RAL-303_100b 3516 chr3L 20113452 20113467 chr3L 20113572 20113587 20 119 36.5 17.0 26.8 0.7 135 chr3L 20113452 intergenic not near genes chr3L 20113520 intergenic not near genes chr3L 20113587 intergenic not near genes chr3L_20_20110001 chr3L_20110001 RAL-303_100b 3517 chr3L 20113468 20113507 chr3L 20113571 20113627 54 118 16.5 16.0 16.2 3.1 159 chr3L 20113468 intergenic not near genes chr3L 20113548 intergenic not near genes chr3L 20113627 intergenic not near genes chr3L_54_20110001 chr3L_20110001 RAL-303_100b 3518 chr3L 20113635 20113688 chr3L 20122917 20122970 roo 53 9281 11.5 8.5 10.0 4.8 9335 chr3L 20113635 intergenic not near genes chr3L 20118302 intergenic not near genes chr3L 20122970 intergenic not near genes chr3L_53_20115001 chr3L_20115001 RAL-303_100b 3519 chr3L 20143061 20143116 chr3L 20143161 20143191 41 102 15.0 11.0 13.0 2.9 130 chr3L 20143061 intergenic not near genes chr3L 20143126 intergenic not near genes chr3L 20143191 intergenic not near genes chr3L_41_20140001 chr3L_20140001 RAL-303_100b 3520 chr3L 20189942 20189998 chr3L 20190071 20190127 66 127 13.0 12.0 12.5 4.9 185 chr3L 20189942 intron CG42674 - chr3L 20190034 intron CG42674 - chr3L 20190127 intron CG42674 - chr3L_66_20190001 chr3L_20190001 RAL-303_100b 3521 chr3L 20212579 20212586 chr3L 20218181 20218188 mdg3 5 5602 41.5 13.5 27.5 0.2 5609 chr3L 20212579 intergenic CG7017 - chr3L 20215384 intergenic not near genes chr3L 20218188 intergenic CG6933 - chr3L_5_20215001 chr3L_20215001 RAL-303_100b 3522 chr3L 20257306 20257349 chr3L 20258452 20258495 pogo 39 1143 18.5 17.0 17.8 2.1 1189 chr3L 20257306 intron rdgC + chr3L 20257900 intron rdgC + chr3L 20258495 intron rdgC + chr3L_39_20255001 chr3L_20255001 RAL-303_100b 3523 chr3L 20315624 20315684 chr3L 20315729 20315774 61 102 8.0 13.5 10.8 5.2 150 chr3L 20315624 3` UTR,intron alphaSnap +,CR43875 - chr3L 20315699 3` UTR,intron alphaSnap +,CR43875 - chr3L 20315774 3` UTR,intron alphaSnap +,CR43875 - chr3L_61_20315001 chr3L_20315001 RAL-303_100b 3524 chr3L 20317086 20317098 chr3L 20317182 20317191 9 96 36.0 14.0 25.0 0.3 105 chr3L 20317086 3` UTR CR43875 - chr3L 20317138 3` UTR CR43875 - chr3L 20317191 3` UTR,5` UTR CR43875 -,Spn77Ba + chr3L_9_20315001 chr3L_20315001 RAL-303_100b 3525 chr3L 20317100 20317129 chr3L 20317181 20317187 8 78 21.0 11.5 16.2 0.5 87 chr3L 20317100 3` UTR CR43875 - chr3L 20317144 3` UTR CR43875 - chr3L 20317187 3` UTR CR43875 - chr3L_8_20315001 chr3L_20315001 RAL-303_100b 3526 chr3L 20321120 20321128 chr3L 20342901 20342909 17.6 14 21781 33.0 79.5 56.2 0.2 21789 chr3L 20321120 exon Spn77Bb + chr3L 20332014 intergenic not near genes chr3L 20342909 exon Spn77Bc + chr3L_14_20330001 chr3L_20330001 RAL-303_100b 3527 chr3L 20386913 20386972 chr3L 20387040 20387099 56 125 15.5 19.0 17.2 3.1 186 chr3L 20386913 intron fbl + chr3L 20387006 intron fbl + chr3L 20387099 intron fbl + chr3L_56_20385001 chr3L_20385001 RAL-303_100b 3528 chr3L 20462565 20462594 chr3L 20462671 20462671 28 103 16.0 0.0 8.0 3.1 106 chr3L 20462565 intron atk - chr3L 20462618 intron atk - chr3L 20462671 intron atk - chr3L_28_20460001 chr3L_20460001 RAL-303_100b 3529 chr3L 20476732 20476738 chr3L 20484354 20484362 springer 5 7624 40.5 20.5 30.5 0.2 7630 chr3L 20476732 3` UTR isoQC + chr3L 20480547 intergenic not near genes chr3L 20484362 3` UTR ZnT77C - chr3L_5_20480001 chr3L_20480001 RAL-303_100b 3530 chr3L 20476739 20476783 chr3L 20484352 20484407 springer 56 7623 17.0 20.0 18.5 2.9 7668 chr3L 20476739 3` UTR isoQC + chr3L 20480573 intergenic not near genes chr3L 20484407 3` UTR ZnT77C - chr3L_56_20480001 chr3L_20480001 RAL-303_100b 3531 chr3L 20525228 20525228 chr3L 22908066 22908067 6 2382838 53.0 90.0 71.5 0.1 2382839 chr3L 20525228 intron CG4825 - chr3L 21716648 intergenic not near genes chr3L 22908067 intergenic not near genes chr3L_6_21715001 chr3L_21715001 RAL-303_100b 3532 chr3L 20525228 20525228 chr3L 24821492 24821493 4 4296264 53.0 64.0 58.5 0.1 4296265 chr3L 20525228 intron CG4825 - chr3L 22673360 intron CG14457 + chr3L 24821493 intergenic not near genes chr3L_4_22670001 chr3L_22670001 RAL-303_100b 3533 chr3L 20525229 20525229 chr3L 22908066 22908067 10 2382838 51.5 90.0 70.8 0.1 2382838 chr3L 20525229 intron CG4825 - chr3L 21716648 intergenic not near genes chr3L 22908067 intergenic not near genes chr3L_10_21715001 chr3L_21715001 RAL-303_100b 3534 chr3L 20525229 20525229 chr3L 24821492 24821494 8 4296265 51.5 64.0 57.8 0.1 4296265 chr3L 20525229 intron CG4825 - chr3L 22673362 intron CG14457 + chr3L 24821494 intergenic not near genes chr3L_8_22670001 chr3L_22670001 RAL-303_100b 3535 chr3L 20525230 20525230 chr3L 22908066 22908067 6 2382837 52.0 90.0 71.0 0.1 2382837 chr3L 20525230 intron CG4825 - chr3L 21716648 intergenic not near genes chr3L 22908067 intergenic not near genes chr3L_6_21715001 chr3L_21715001 RAL-303_100b 3536 chr3L 20590043 20590096 chr3L 20590602 20590659 412 43 559 9.0 13.5 11.2 3.5 616 chr3L 20590043 intergenic not near genes chr3L 20590351 intergenic not near genes chr3L 20590659 intergenic not near genes chr3L_43_20590001 chr3L_20590001 RAL-303_100b 3537 chr3L 20710735 20710740 chr3L 20710837 20710841 5 102 33.0 9.5 21.2 0.2 106 chr3L 20710735 intergenic not near genes chr3L 20710788 intergenic not near genes chr3L 20710841 intergenic not near genes chr3L_5_20710001 chr3L_20710001 RAL-303_100b 3538 chr3L 20710741 20710742 chr3L 20710836 20710844 5 100 32.0 9.5 20.8 0.2 103 chr3L 20710741 intergenic not near genes chr3L 20710792 intergenic not near genes chr3L 20710844 intergenic not near genes chr3L_5_20710001 chr3L_20710001 RAL-303_100b 3539 chr3L 20710743 20710791 chr3L 20710835 20710893 50 98 14.5 11.0 12.8 3.6 150 chr3L 20710743 intergenic not near genes chr3L 20710818 intergenic not near genes chr3L 20710893 intergenic not near genes chr3L_50_20710001 chr3L_20710001 RAL-303_100b 3540 chr3L 20816558 20816563 chr3L 20816800 20816800 5 241 79.0 77.0 78.0 0.1 242 chr3L 20816558 5` UTR Pka-R1 + chr3L 20816679 exon Pka-R1 + chr3L 20816800 exon Pka-R1 + chr3L_5_20815001 chr3L_20815001 RAL-303_100b 3541 chr3L 20875062 20875076 chr3L 20875140 20875177 16 99 0.0 21.0 10.5 1.4 115 chr3L 20875062 intron CG32432 - chr3L 20875120 intron CG32432 - chr3L 20875177 intron CG32432 - chr3L_16_20875001 chr3L_20875001 RAL-303_100b 3542 chr3L 20907842 20907900 chr3L 20907949 20907981 47 102 12.5 14.5 13.5 3.2 139 chr3L 20907842 intergenic not near genes chr3L 20907912 intergenic not near genes chr3L 20907981 intergenic not near genes chr3L_47_20905001 chr3L_20905001 RAL-303_100b 3543 chr3L 20945330 20945378 chr3L 20945440 20945457 38 104 22.5 13.0 17.8 2.0 127 chr3L 20945330 intron fng - chr3L 20945394 intron fng - chr3L 20945457 intron fng - chr3L_38_20945001 chr3L_20945001 RAL-303_100b 3544 chr3L 21014889 21014948 chr3L 21023395 21023443 Tirant 65 8501 12.0 18.5 15.2 4.0 8554 chr3L 21014889 intron skd - chr3L 21019166 intron skd - chr3L 21023443 intron skd - chr3L_65_21015001 chr3L_21015001 RAL-303_100b 3545 chr3L 21062430 21062489 chr3L 21062550 21062610 50 118 6.0 12.5 9.2 4.9 180 chr3L 21062430 intron siz + chr3L 21062520 intron siz + chr3L 21062610 intron siz + chr3L_50_21060001 chr3L_21060001 RAL-303_100b 3546 chr3L 21082184 21082241 chr3L 21082287 21082338 55 101 12.5 14.0 13.2 3.9 154 chr3L 21082184 intron ko - chr3L 21082261 intron ko - chr3L 21082338 intron ko - chr3L_55_21080001 chr3L_21080001 RAL-303_100b 3547 chr3L 21151840 21151897 chr3L 21156949 21157006 flea 51 5107 14.5 12.5 13.5 3.5 5166 chr3L 21151840 intron Ac78C - chr3L 21154423 intron Ac78C - chr3L 21157006 intron Ac78C - chr3L_51_21150001 chr3L_21150001 RAL-303_100b 3548 chr3L 21160942 21160994 chr3L 21161062 21161115 47 119 17.0 18.0 17.5 2.5 173 chr3L 21160942 5` UTR Ac78C - chr3L 21161028 intron Ac78C - chr3L 21161115 intron Ac78C - chr3L_47_21160001 chr3L_21160001 RAL-303_100b 3549 chr3L 21243742 21243742 chr3L 21251314 21251328 412 6 7577 29.0 23.0 26.0 0.2 7586 chr3L 21243742 intron Eip78C + chr3L 21247535 intron Eip78C + chr3L 21251328 intron Eip78C + chr3L_6_21245001 chr3L_21245001 RAL-303_100b 3550 chr3L 21243743 21243775 chr3L 21251310 21251317 412 6 7565 11.5 20.5 16.0 0.4 7574 chr3L 21243743 intron Eip78C + chr3L 21247530 intron Eip78C + chr3L 21251317 intron Eip78C + chr3L_6_21245001 chr3L_21245001 RAL-303_100b 3551 chr3L 21256507 21256549 chr3L 21256626 21256668 21 114 22.5 18.0 20.2 1.0 161 chr3L 21256507 intron Eip78C + chr3L 21256588 intron Eip78C + chr3L 21256668 intron Eip78C + chr3L_21_21255001 chr3L_21255001 RAL-303_100b 3552 chr3L 21256550 21256563 chr3L 21256623 21256657 29 97 16.0 18.0 17.0 1.6 107 chr3L 21256550 intron Eip78C + chr3L 21256604 intron Eip78C + chr3L 21256657 intron Eip78C + chr3L_29_21255001 chr3L_21255001 RAL-303_100b 3553 chr3L 21306121 21306178 chr3L 21315305 21315362 roo 54 9183 17.5 8.5 13.0 3.9 9241 chr3L 21306121 3` UTR CG7632 + chr3L 21310742 intron Pc - chr3L 21315362 3` UTR Pc - chr3L_54_21310001 chr3L_21310001 RAL-303_100b 3554 chr3L 21319502 21319559 chr3L 21319617 21319674 70 112 11.0 16.0 13.5 4.8 172 chr3L 21319502 5` UTR Rab26 + chr3L 21319588 5` UTR Rab26 + chr3L 21319674 5` UTR Rab26 + chr3L_70_21315001 chr3L_21315001 RAL-303_100b 3555 chr3L 21361701 21361752 chr3L 21362679 21362730 G2 50 976 11.0 18.0 14.5 3.2 1029 chr3L 21361701 intergenic CG32440 + chr3L 21362216 intergenic not near genes chr3L 21362730 intergenic not near genes chr3L_50_21360001 chr3L_21360001 RAL-303_100b 3556 chr3L 21372694 21372752 chr3L 21379227 21379284 McClintock 14 6530 5.5 5.5 5.5 2.2 6590 chr3L 21372694 intergenic not near genes chr3L 21375989 intergenic not near genes chr3L 21379284 intergenic not near genes chr3L_14_21375001 chr3L_21375001 RAL-303_100b 3557 chr3L 21406970 21407028 chr3L 21407074 21407132 51 102 25.0 25.0 25.0 2.0 162 chr3L 21406970 intron rgn + chr3L 21407051 intron rgn + chr3L 21407132 intron rgn + chr3L_51_21405001 chr3L_21405001 RAL-303_100b 3558 chr3L 21415127 21415134 chr3L 21415231 21415242 7 107 35.5 27.5 31.5 0.2 115 chr3L 21415127 intron rgn + chr3L 21415184 intron rgn + chr3L 21415242 intron rgn + chr3L_7_21415001 chr3L_21415001 RAL-303_100b 3559 chr3L 21415136 21415166 chr3L 21415224 21415274 33 105 13.5 22.5 18.0 1.7 138 chr3L 21415136 intron rgn + chr3L 21415205 intron rgn + chr3L 21415274 intron rgn + chr3L_33_21415001 chr3L_21415001 RAL-303_100b 3560 chr3L 21415507 21415518 chr3L 21415610 21415621 8 103 38.5 18.5 28.5 0.3 114 chr3L 21415507 intron rgn + chr3L 21415564 intron rgn + chr3L 21415621 intron rgn + chr3L_8_21415001 chr3L_21415001 RAL-303_100b 3561 chr3L 21415521 21415531 chr3L 21415609 21415624 8 99 30.5 18.0 24.2 0.3 103 chr3L 21415521 intron rgn + chr3L 21415572 intron rgn + chr3L 21415624 intron rgn + chr3L_8_21415001 chr3L_21415001 RAL-303_100b 3562 chr3L 21415532 21415561 chr3L 21415606 21415664 34 101 15.5 16.0 15.8 2.0 132 chr3L 21415532 intron rgn + chr3L 21415598 intron rgn + chr3L 21415664 intron rgn + chr3L_34_21415001 chr3L_21415001 RAL-303_100b 3563 chr3L 21417811 21417818 chr3L 21417917 21417922 5 105 38.0 13.0 25.5 0.2 111 chr3L 21417811 intron rgn + chr3L 21417866 intron rgn + chr3L 21417922 intron rgn + chr3L_5_21415001 chr3L_21415001 RAL-303_100b 3564 chr3L 21417820 21417867 chr3L 21417916 21417973 26 99 17.5 12.5 15.0 1.6 153 chr3L 21417820 intron rgn + chr3L 21417896 intron rgn + chr3L 21417973 intron rgn + chr3L_26_21415001 chr3L_21415001 RAL-303_100b 3565 chr3L 4341331 4341333 chr3L 21448026 21448026 8 17106694 62.0 77.5 69.8 0.1 17106695 chr3L 4341331 intron Cip4 - chr3L 12894678 3` UTR CG14118 + chr3L 21448026 3` UTR Syx7 + chr3L_8_12890001 chr3L_12890001 RAL-303_100b 3566 chr3L 21458526 21458579 chr3L 21458659 21458719 51 138 16.0 17.0 16.5 2.9 193 chr3L 21458526 intergenic not near genes chr3L 21458622 intergenic not near genes chr3L 21458719 intergenic not near genes chr3L_51_21455001 chr3L_21455001 RAL-303_100b 3567 chr3L 21576150 21576158 chr3L 21576258 21576261 5 105 34.5 29.0 31.8 0.2 111 chr3L 21576150 3` UTR CR43939 - chr3L 21576206 3` UTR CR43939 - chr3L 21576261 3` UTR CR43939 - chr3L_5_21575001 chr3L_21575001 RAL-303_100b 3568 chr3L 21576160 21576203 chr3L 21576257 21576311 26 105 17.5 29.0 23.2 1.1 151 chr3L 21576160 3` UTR CR43939 - chr3L 21576236 3` UTR CR43939 - chr3L 21576311 3` UTR CR43939 - chr3L_26_21575001 chr3L_21575001 RAL-303_100b 3569 chr3L 21599755 21599808 chr3L 21599908 21599946 48 152 9.0 12.0 10.5 4.2 191 chr3L 21599755 intron TfAP-2 + chr3L 21599850 intron TfAP-2 + chr3L 21599946 intron TfAP-2 + chr3L_48_21595001 chr3L_21595001 RAL-303_100b 3570 chr3L 21656969 21657026 chr3L 21657087 21657144 67 115 15.0 15.5 15.2 4.1 175 chr3L 21656969 intron CG43980 + chr3L 21657056 intron CG43980 + chr3L 21657144 intron CG43980 + chr3L_67_21655001 chr3L_21655001 RAL-303_100b 3571 chr3L 21692897 21692953 chr3L 21693093 21693149 71 193 14.5 16.0 15.2 4.4 252 chr3L 21692897 3` UTR CG32447 - chr3L 21693023 3` UTR CG32447 - chr3L 21693149 3` UTR CG32447 - chr3L_71_21690001 chr3L_21690001 RAL-303_100b 3572 chr3L 21749290 21749348 chr3L 21754475 21754508 Doc 43 5174 13.0 14.5 13.8 2.9 5218 chr3L 21749290 intron Syn1 - chr3L 21751899 intron Syn1 - chr3L 21754508 intron Syn1 - chr3L_43_21750001 chr3L_21750001 RAL-303_100b 3573 chr3L 21770016 21770023 chr3L 21770128 21770134 5 111 31.5 26.5 29.0 0.2 118 chr3L 21770016 5` UTR,intron,5` UTR Syn1 -,CG42689 +,CG7370 + chr3L 21770075 5` UTR,intron,intron Syn1 -,CG42689 +,CG7370 + chr3L 21770134 5` UTR,intron,intron Syn1 -,CG42689 +,CG7370 + chr3L_5_21770001 chr3L_21770001 RAL-303_100b 3574 chr3L 21770025 21770036 chr3L 21770127 21770148 6 110 25.0 25.5 25.2 0.2 123 chr3L 21770025 5` UTR,intron,5` UTR Syn1 -,CG42689 +,CG7370 + chr3L 21770086 5` UTR,intron,intron Syn1 -,CG42689 +,CG7370 + chr3L 21770148 5` UTR,intron,intron Syn1 -,CG42689 +,CG7370 + chr3L_6_21770001 chr3L_21770001 RAL-303_100b 3575 chr3L 21776662 21776668 chr3L 21776774 21776780 4 112 0.5 17.0 8.8 0.4 118 chr3L 21776662 intron,intron CG42689 +,CG42552 + chr3L 21776721 intron,intron CG42689 +,CG42552 + chr3L 21776780 intron,intron CG42689 +,CG42552 + chr3L_4_21775001 chr3L_21775001 RAL-303_100b 3576 chr3L 21776669 21776703 chr3L 21776771 21776815 18 110 0.5 15.5 8.0 2.0 146 chr3L 21776669 intron,intron CG42689 +,CG42552 + chr3L 21776742 intron,intron CG42689 +,CG42552 + chr3L 21776815 intron,intron CG42689 +,CG42552 + chr3L_18_21775001 chr3L_21775001 RAL-303_100b 3577 chr3L 21788613 21788672 chr3L 21788859 21788918 65 244 10.0 6.0 8.0 7.2 305 chr3L 21788613 intergenic not near genes chr3L 21788766 intergenic not near genes chr3L 21788918 intergenic not near genes chr3L_65_21785001 chr3L_21785001 RAL-303_100b 3578 chr3L 21809941 21809945 chr3L 21810068 21810072 5 127 46.5 44.5 45.5 0.1 131 chr3L 21809941 intron eg + chr3L 21810006 intron eg + chr3L 21810072 intron eg + chr3L_5_21810001 chr3L_21810001 RAL-303_100b 3579 chr3L 21809947 21809973 chr3L 21810064 21810070 15 118 23.0 41.5 32.2 0.5 123 chr3L 21809947 intron eg + chr3L 21810008 intron eg + chr3L 21810070 intron eg + chr3L_15_21810001 chr3L_21810001 RAL-303_100b 3580 chr3L 21852232 21852284 chr3L 21852349 21852402 42 113 10.0 10.0 10.0 3.8 170 chr3L 21852232 intron mub + chr3L 21852317 intron mub + chr3L 21852402 intron mub + chr3L_42_21850001 chr3L_21850001 RAL-303_100b 3581 chr3L 21869431 21869434 chr3L 21869537 21869540 4 106 39.5 15.0 27.2 0.1 109 chr3L 21869431 intron mub + chr3L 21869486 intron mub + chr3L 21869540 intron mub + chr3L_4_21865001 chr3L_21865001 RAL-303_100b 3582 chr3L 21869436 21869488 chr3L 21869535 21869579 48 96 13.0 14.0 13.5 3.3 143 chr3L 21869436 intron mub + chr3L 21869508 intron mub + chr3L 21869579 intron mub + chr3L_48_21865001 chr3L_21865001 RAL-303_100b 3583 chr3L 22094252 22094306 chr3L 22094374 22094428 42 122 13.0 19.0 16.0 2.5 176 chr3L 22094252 intergenic not near genes chr3L 22094340 intergenic not near genes chr3L 22094428 intergenic not near genes chr3L_42_22090001 chr3L_22090001 RAL-303_100b 3584 chr3L 22099659 22099662 chr3L 22105865 22105873 3S18 5 6210 45.0 14.0 29.5 0.2 6214 chr3L 22099659 intergenic not near genes chr3L 22102766 intergenic not near genes chr3L 22105873 intergenic not near genes chr3L_5_22100001 chr3L_22100001 RAL-303_100b 3585 chr3L 22099663 22099705 chr3L 22105863 22105895 3S18 42 6206 18.5 12.5 15.5 2.5 6232 chr3L 22099663 intergenic not near genes chr3L 22102779 intergenic not near genes chr3L 22105895 intergenic not near genes chr3L_42_22100001 chr3L_22100001 RAL-303_100b 3586 chr3L 22130485 22130523 chr3L 22130645 22130693 29 167 9.0 17.5 13.2 2.0 208 chr3L 22130485 intergenic not near genes chr3L 22130589 intergenic not near genes chr3L 22130693 intergenic not near genes chr3L_29_22130001 chr3L_22130001 RAL-303_100b 3587 chr3L 22169429 22169485 chr3L 22169547 22169603 41 116 10.5 13.0 11.8 3.2 174 chr3L 22169429 intron olf413 + chr3L 22169516 intron olf413 + chr3L 22169603 intron olf413 + chr3L_41_22165001 chr3L_22165001 RAL-303_100b 3588 chr3L 22179089 22179117 chr3L 22179176 22179217 26 96 13.5 10.0 11.8 2.0 128 chr3L 22179089 intron olf413 + chr3L 22179153 intron olf413 + chr3L 22179217 intron olf413 + chr3L_26_22175001 chr3L_22175001 RAL-303_100b 3589 chr3L 22328037 22328064 chr3L 22328161 22328188 21 123 29.5 16.5 23.0 0.9 151 chr3L 22328037 intron Ten-m - chr3L 22328112 intron Ten-m - chr3L 22328188 intron Ten-m - chr3L_21_22325001 chr3L_22325001 RAL-303_100b 3590 chr3L 22328070 22328091 chr3L 22328157 22328215 21 113 14.0 14.5 14.2 1.4 145 chr3L 22328070 intron Ten-m - chr3L 22328142 intron Ten-m - chr3L 22328215 intron Ten-m - chr3L_21_22325001 chr3L_22325001 RAL-303_100b 3591 chr3L 22366684 22366742 chr3L 22366787 22366845 67 102 19.5 15.0 17.2 3.7 161 chr3L 22366684 intron Ten-m - chr3L 22366764 intron Ten-m - chr3L 22366845 intron Ten-m - chr3L_67_22365001 chr3L_22365001 RAL-303_100b 3592 chr3L 22411359 22411399 chr3L 22411446 22411501 43 91 9.0 10.0 9.5 4.1 142 chr3L 22411359 intergenic not near genes chr3L 22411430 intergenic not near genes chr3L 22411501 intergenic not near genes chr3L_43_22410001 chr3L_22410001 RAL-303_100b 3593 chr3L 22447173 22447200 chr3L 22447289 22447316 22 114 33.5 14.0 23.8 0.9 143 chr3L 22447173 intergenic not near genes chr3L 22447244 intergenic not near genes chr3L 22447316 intergenic not near genes chr3L_22_22445001 chr3L_22445001 RAL-303_100b 3594 chr3L 22447201 22447231 chr3L 22447286 22447346 24 112 14.0 13.0 13.5 1.7 145 chr3L 22447201 intergenic not near genes chr3L 22447274 intergenic not near genes chr3L 22447346 intergenic not near genes chr3L_24_22445001 chr3L_22445001 RAL-303_100b 3595 chr3L 22522675 22522728 chr3L 22522774 22522830 60 99 13.5 14.5 14.0 4.0 155 chr3L 22522675 intergenic not near genes chr3L 22522752 intergenic not near genes chr3L 22522830 intergenic not near genes chr3L_60_22520001 chr3L_22520001 RAL-303_100b 3596 chr3L 22554402 22554409 chr3L 22554503 22554510 4 99 35.5 16.0 25.8 0.1 108 chr3L 22554402 intergenic not near genes chr3L 22554456 intergenic not near genes chr3L 22554510 intergenic not near genes chr3L_4_22550001 chr3L_22550001 RAL-303_100b 3597 chr3L 22554410 22554454 chr3L 22554501 22554555 57 98 15.0 16.0 15.5 3.5 145 chr3L 22554410 intergenic not near genes chr3L 22554482 intergenic not near genes chr3L 22554555 intergenic not near genes chr3L_57_22550001 chr3L_22550001 RAL-303_100b 3598 chr3L 22555743 22555803 chr3L 22563238 22563272 blood 50 7490 10.5 11.5 11.0 4.2 7529 chr3L 22555743 intergenic not near genes chr3L 22559508 intergenic not near genes chr3L 22563272 intergenic not near genes chr3L_50_22555001 chr3L_22555001 RAL-303_100b 3599 chr3L 22569553 22569602 chr3L 22569676 22569725 41 120 8.0 22.5 15.2 2.5 172 chr3L 22569553 intergenic not near genes chr3L 22569639 intergenic not near genes chr3L 22569725 intergenic not near genes chr3L_41_22565001 chr3L_22565001 RAL-303_100b 3600 chr3L 22577596 22577629 chr3L 22582408 22582442 Doc 23 4810 20.0 17.0 18.5 1.2 4846 chr3L 22577596 intergenic not near genes chr3L 22580019 intergenic not near genes chr3L 22582442 3` UTR CG14459 - chr3L_23_22580001 chr3L_22580001 RAL-303_100b 3601 chr3L 22577630 22577648 chr3L 22582407 22582431 Doc 18 4804 16.0 17.0 16.5 1.0 4801 chr3L 22577630 intergenic not near genes chr3L 22580030 intergenic not near genes chr3L 22582431 3` UTR CG14459 - chr3L_18_22580001 chr3L_22580001 RAL-303_100b 3602 chr3L 22617166 22617221 chr3L 22624643 22624687 blood 43 7471 13.0 17.0 15.0 2.7 7521 chr3L 22617166 intron CG14459 - chr3L 22620926 intron CG14459 - chr3L 22624687 intron CG14459 - chr3L_43_22620001 chr3L_22620001 RAL-303_100b 3603 chr3L 22678057 22678078 chr3L 22678170 22678188 14 113 35.0 25.0 30.0 0.5 131 chr3L 22678057 intron CG14457 + chr3L 22678122 intron CG14457 + chr3L 22678188 intron CG14457 + chr3L_14_22675001 chr3L_22675001 RAL-303_100b 3604 chr3L 22678079 22678111 chr3L 22678167 22678176 46 104 14.5 21.5 18.0 2.4 97 chr3L 22678079 intron CG14457 + chr3L 22678128 intron CG14457 + chr3L 22678176 intron CG14457 + chr3L_46_22675001 chr3L_22675001 RAL-303_100b 3605 chr3L 22731864 22731890 chr3L 22731969 22731969 23 103 15.5 25.0 20.2 1.1 105 chr3L 22731864 intron CG11367 + chr3L 22731916 intron CG11367 + chr3L 22731969 intron CG11367 + chr3L_23_22730001 chr3L_22730001 RAL-303_100b 3606 chr3L 22747641 22747648 chr3L 22747734 22747752 6 98 52.5 13.5 33.0 0.2 111 chr3L 22747641 exon CG7369 + chr3L 22747696 exon CG7369 + chr3L 22747752 3` UTR CG7369 + chr3L_6_22745001 chr3L_22745001 RAL-303_100b 3607 chr3L 22761367 22761415 chr3L 22766821 22766874 Ivk 50 5457 17.0 19.0 18.0 2.6 5507 chr3L 22761367 intron SPoCk + chr3L 22764120 intron SPoCk + chr3L 22766874 intron SPoCk + chr3L_50_22760001 chr3L_22760001 RAL-303_100b 3608 chr3L 22849432 22849442 chr3L 22849542 22849552 9 110 16.0 39.0 27.5 0.3 120 chr3L 22849432 intergenic not near genes chr3L 22849492 intergenic not near genes chr3L 22849552 intergenic not near genes chr3L_9_22845001 chr3L_22845001 RAL-303_100b 3609 chr3L 22855306 22855354 chr3L 22855409 22855451 52 106 13.5 25.5 19.5 2.5 145 chr3L 22855306 exon CG32459 - chr3L 22855378 exon CG32459 - chr3L 22855451 exon CG32459 - chr3L_52_22855001 chr3L_22855001 RAL-303_100b 3610 chr3L 22856586 22856591 chr3L 22856897 22856902 6 311 44.5 14.0 29.2 0.2 316 chr3L 22856586 intergenic not near genes chr3L 22856744 intergenic not near genes chr3L 22856902 intergenic not near genes chr3L_6_22855001 chr3L_22855001 RAL-303_100b 3611 chr3L 22856592 22856640 chr3L 22856896 22856951 58 310 15.0 13.5 14.2 3.8 359 chr3L 22856592 intergenic not near genes chr3L 22856772 intergenic not near genes chr3L 22856951 intergenic not near genes chr3L_58_22855001 chr3L_22855001 RAL-303_100b 3612 chr3L 22865963 22866008 chr3L 22867121 22867166 Doc 41 1157 17.0 21.5 19.2 2.0 1203 chr3L 22865963 intron CG33170 + chr3L 22866564 intron CG33170 + chr3L 22867166 intron CG33170 + chr3L_41_22865001 chr3L_22865001 RAL-303_100b 3613 chr3L 22897175 22897226 chr3L 22897283 22897334 60 106 11.5 19.5 15.5 3.6 159 chr3L 22897175 intergenic not near genes chr3L 22897254 intergenic not near genes chr3L 22897334 intergenic not near genes chr3L_60_22895001 chr3L_22895001 RAL-303_100b 3614 chr3L 9307795 9307796 chr3L 22908066 22908066 6 13600270 60.5 90.0 75.2 0.1 13600271 chr3L 9307795 intergenic not near genes chr3L 16107930 intron Zn72D - chr3L 22908066 intergenic not near genes chr3L_6_16105001 chr3L_16105001 RAL-303_100b 3615 chr3L 19220632 19220637 chr3L 22908066 22908066 90 3687431 53.0 90.0 71.5 1.2 3687434 chr3L 19220632 intron fz2 - chr3L 21064349 intron siz + chr3L 22908066 intergenic not near genes chr3L_90_21060001 chr3L_21060001 RAL-303_100b 3616 chr3L 20525228 20525230 chr3L 22908066 22908066 27 2382837 52.0 90.0 71.0 0.4 2382838 chr3L 20525228 intron CG4825 - chr3L 21716647 intergenic not near genes chr3L 22908066 intergenic not near genes chr3L_27_21715001 chr3L_21715001 RAL-303_100b 3617 chr3L 22908066 22908066 chr3L 24821492 24821494 14 1913428 87.0 64.0 75.5 0.2 1913428 chr3L 22908066 intergenic not near genes chr3L 23864780 intron CG40470 - chr3L 24821494 intergenic not near genes chr3L_14_23860001 chr3L_23860001 RAL-303_100b 3618 chr3L 19220633 19220637 chr3L 22908067 22908067 51 3687433 53.0 89.5 71.2 0.7 3687434 chr3L 19220633 intron fz2 - chr3L 21064350 intron siz + chr3L 22908067 intergenic not near genes chr3L_51_21060001 chr3L_21060001 RAL-303_100b 3619 chr3L 20525228 20525230 chr3L 22908067 22908067 10 2382838 52.0 89.5 70.8 0.1 2382839 chr3L 20525228 intron CG4825 - chr3L 21716648 intergenic not near genes chr3L 22908067 intergenic not near genes chr3L_10_21715001 chr3L_21715001 RAL-303_100b 3620 chr3L 22908067 22908067 chr3L 24821492 24821496 7 1913427 86.5 64.0 75.2 0.1 1913429 chr3L 22908067 intergenic not near genes chr3L 23864782 intron CG40470 - chr3L 24821496 intergenic not near genes chr3L_7_23860001 chr3L_23860001 RAL-303_100b 3621 chr3L 22924923 22924975 chr3L 22925024 22925071 23 95 12.0 6.0 9.0 2.3 148 chr3L 22924923 intergenic not near genes chr3L 22924997 intergenic not near genes chr3L 22925071 intergenic not near genes chr3L_23_22920001 chr3L_22920001 RAL-303_100b 3622 chr3L 22980569 22980591 chr3L 22980664 22980701 24 105 9.5 16.0 12.8 1.7 132 chr3L 22980569 intergenic not near genes chr3L 22980635 intergenic not near genes chr3L 22980701 intergenic not near genes chr3L_24_22980001 chr3L_22980001 RAL-303_100b 3623 chr3L 22989839 22989872 chr3L 22996838 22996866 297 25 6998 21.5 10.0 15.8 1.5 7027 chr3L 22989839 intergenic not near genes chr3L 22993352 intergenic not near genes chr3L 22996866 intergenic not near genes chr3L_25_22990001 chr3L_22990001 RAL-303_100b 3624 chr3L 22989873 22989895 chr3L 22996837 22996894 297 24 6994 12.0 9.5 10.8 2.0 7021 chr3L 22989873 intergenic not near genes chr3L 22993384 intergenic not near genes chr3L 22996894 intergenic not near genes chr3L_24_22990001 chr3L_22990001 RAL-303_100b 3625 chr3L 23165887 23165899 chr3L 23173356 23173368 Quasimodo 4 7469 23.5 6.0 14.8 0.3 7481 chr3L 23165887 intergenic not near genes chr3L 23169628 intergenic not near genes chr3L 23173368 intergenic not near genes chr3L_4_23165001 chr3L_23165001 RAL-303_100b 3626 chr3L 23875501 23875507 chr3L 23875607 23875613 9 106 34.5 14.0 24.2 0.4 112 chr3L 23875501 intron CG40470 - chr3L 23875557 intron CG40470 - chr3L 23875613 intron CG40470 - chr3L_9_23875001 chr3L_23875001 RAL-303_100b 3627 chr3L 23875508 23875556 chr3L 23875606 23875662 48 102 12.0 14.0 13.0 3.4 154 chr3L 23875508 intron CG40470 - chr3L 23875585 intron CG40470 - chr3L 23875662 intron CG40470 - chr3L_48_23875001 chr3L_23875001 RAL-303_100b 3628 chr3L 24012389 24012436 chr3L 24020755 24020802 roo 24 8365 11.5 18.5 15.0 1.5 8413 chr3L 24012389 intergenic not near genes chr3L 24016596 intergenic not near genes chr3L 24020802 intergenic not near genes chr3L_24_24015001 chr3L_24015001 RAL-303_100b 3629 chr3L 24168762 24168822 chr3L 24176115 24176174 ZAM 50 7348 13.0 15.0 14.0 3.3 7412 chr3L 24168762 intron Snap25 + chr3L 24172468 intron Snap25 + chr3L 24176174 intron Snap25 + chr3L_50_24170001 chr3L_24170001 RAL-303_100b 3630 chr3L 24791874 24791907 chr3L 24796678 24796711 Doc 22 4803 20.0 11.5 15.8 1.3 4837 chr3L 24791874 intergenic not near genes chr3L 24794292 intergenic not near genes chr3L 24796711 intergenic not near genes chr3L_22_24790001 chr3L_24790001 RAL-303_100b 3631 chr3L 18198930 18198935 chr3L 24821492 24821492 7 6622561 59.0 64.0 61.5 0.1 6622562 chr3L 18198930 intergenic not near genes chr3L 21510211 intron M6 + chr3L 24821492 intergenic not near genes chr3L_7_21510001 chr3L_21510001 RAL-303_100b 3632 chr3L 20525228 20525230 chr3L 24821492 24821492 5 4296263 52.0 64.0 58.0 0.1 4296264 chr3L 20525228 intron CG4825 - chr3L 22673360 intron CG14457 + chr3L 24821492 intergenic not near genes chr3L_5_22670001 chr3L_22670001 RAL-303_100b 3633 chr3L 18198930 18198931 chr3L 24821493 24821493 7 6622562 60.0 64.0 62.0 0.1 6622563 chr3L 18198930 intergenic not near genes chr3L 21510212 intron M6 + chr3L 24821493 intergenic not near genes chr3L_7_21510001 chr3L_21510001 RAL-303_100b 3634 chr3L 20525230 20525230 chr3L 24821493 24821493 8 4296263 52.0 64.0 58.0 0.1 4296263 chr3L 20525230 intron CG4825 - chr3L 22673362 intron CG14457 + chr3L 24821493 intergenic not near genes chr3L_8_22670001 chr3L_22670001 RAL-303_100b 3635 chr3L 24948597 24948627 chr3L 24948708 24948746 19 116 7.5 14.5 11.0 1.6 149 chr3L 24948597 intergenic not near genes chr3L 24948672 intergenic not near genes chr3L 24948746 intergenic not near genes chr3L_19_24945001 chr3L_24945001 RAL-303_100b 3636 chr3L 25331612 25331634 chr3L 25331728 25331750 11 112 28.0 11.0 19.5 0.5 138 chr3L 25331612 intergenic not near genes chr3L 25331681 intergenic not near genes chr3L 25331750 intergenic not near genes chr3L_11_25330001 chr3L_25330001 RAL-303_100b 3637 chr3L 25331635 25331653 chr3L 25331727 25331764 18 110 23.0 10.5 16.8 1.0 129 chr3L 25331635 intergenic not near genes chr3L 25331700 intergenic not near genes chr3L 25331764 intergenic not near genes chr3L_18_25330001 chr3L_25330001 RAL-303_100b 3638 chr3L 25502177 25502222 chr3L 25502305 25502350 5 128 60.5 55.0 57.8 0.1 173 chr3L 25502177 intron CG41343 - chr3L 25502264 intron CG41343 - chr3L 25502350 intron CG41343 - chr3L_5_25500001 chr3L_25500001 RAL-303_100b 3639 chr3L 24152388 24152441 chr3L 25627087 25627116 4 1474693 70.5 61.5 66.0 0.1 1474728 chr3L 24152388 intron Snap25 + chr3L 24889752 intergenic not near genes chr3L 25627116 intron CG41343 - chr3L_4_24885001 chr3L_24885001 RAL-303_100b 3640 chr3L 26026696 26026706 chr3L 26026811 26026811 6 112 58.5 75.5 67.0 0.1 115 chr3L 26026696 intergenic not near genes chr3L 26026754 intergenic not near genes chr3L 26026811 intergenic not near genes chr3L_6_26025001 chr3L_26025001 RAL-303_100b 3641 chr3L 26026747 26026752 chr3L 26026862 26026867 5 115 70.5 68.5 69.5 0.1 120 chr3L 26026747 intergenic not near genes chr3L 26026807 intergenic not near genes chr3L 26026867 intergenic not near genes chr3L_5_26025001 chr3L_26025001 RAL-303_100b 3642 chr3L 26290080 26290127 chr3L 26290265 26290323 26 191 16.5 10.0 13.2 1.8 243 chr3L 26290080 intergenic not near genes chr3L 26290202 intergenic not near genes chr3L 26290323 intergenic not near genes chr3L_26_26290001 chr3L_26290001 RAL-303_100b 3643 chr3L 24820699 24820704 chr3L 26763327 26763332 Doc4-element 7 1942628 48.5 29.0 38.8 0.2 1942633 chr3L 24820699 intergenic not near genes chr3L 25792016 intergenic not near genes chr3L 26763332 intergenic not near genes chr3L_7_25790001 chr3L_25790001 RAL-303_100b 3644 chr3L 23941246 23941247 chr3L 26882300 26882300 1360 4 2941054 49.5 10.0 29.8 0.1 2941054 chr3L 23941246 intron CG40470 - chr3L 25411773 intergenic not near genes chr3L 26882300 intergenic not near genes chr3L_4_25410001 chr3L_25410001 RAL-303_100b 3645 chr3L 27390389 27390688 chr3L 27390635 27390782 18 147 108.0 107.0 107.5 0.2 393 chr3L 27390389 intron Dbp80 + chr3L 27390586 intron Dbp80 + chr3L 27390782 intron Dbp80 + chr3L_18_27390001 chr3L_27390001 RAL-303_100b 3646 chr3L 27390689 27390712 chr3L 27390777 27390811 16 99 106.0 101.0 103.5 0.2 122 chr3L 27390689 intron Dbp80 + chr3L 27390750 intron Dbp80 + chr3L 27390811 intron Dbp80 + chr3L_16_27390001 chr3L_27390001 RAL-303_100b 3647 chr3R 98954 98955 chr3R 109521 109522 7 10567 18.5 10.0 14.2 0.5 10568 chr3R 98954 intergenic not near genes chr3R 104238 intergenic not near genes chr3R 109522 intergenic not near genes chr3R_7_100001 chr3R_100001 RAL-303_100b 3648 chr3R 1521166 1521167 chr3R 1521279 1521280 4 113 56.0 47.0 51.5 0.1 114 chr3R 1521166 intergenic not near genes chr3R 1521223 intergenic not near genes chr3R 1521280 intergenic not near genes chr3R_4_1520001 chr3R_1520001 RAL-303_100b 3649 chr3R 1521169 1521173 chr3R 1521258 1521268 10 104 54.5 47.5 51.0 0.2 99 chr3R 1521169 intergenic not near genes chr3R 1521218 intergenic not near genes chr3R 1521268 intergenic not near genes chr3R_10_1520001 chr3R_1520001 RAL-303_100b 3650 chr3R 1521174 1521183 chr3R 1521246 1521296 25 109 54.5 48.5 51.5 0.5 122 chr3R 1521174 intergenic not near genes chr3R 1521235 intergenic not near genes chr3R 1521296 intergenic not near genes chr3R_25_1520001 chr3R_1520001 RAL-303_100b 3651 chr3R 1867168 1867173 chr3R 1954914 1954918 Doc3-element 5 87756 47.0 21.5 34.2 0.1 87750 chr3R 1867168 intron CG42623 + chr3R 1911043 intron CG42623 + chr3R 1954918 intergenic not near genes chr3R_5_1910001 chr3R_1910001 RAL-303_100b 3652 chr3R 2534113 2534167 chr3R 2541707 2541761 32 7584 46.0 58.5 52.2 0.6 7648 chr3R 2534113 intergenic not near genes chr3R 2537937 intergenic not near genes chr3R 2541761 intergenic not near genes chr3R_32_2535001 chr3R_2535001 RAL-303_100b 3653 chr3R 2556878 2556936 chr3R 2557586 2557644 36 710 86.0 85.5 85.8 0.4 766 chr3R 2556878 intron CG41056 - chr3R 2557261 intron CG41056 - chr3R 2557644 intron CG41056 - chr3R_36_2555001 chr3R_2555001 RAL-303_100b 3654 chr3R 2839233 2839247 chr3R 2839366 2839381 4 134 37.5 24.5 31.0 0.1 148 chr3R 2839233 intergenic not near genes chr3R 2839307 intergenic not near genes chr3R 2839381 intergenic not near genes chr3R_4_2835001 chr3R_2835001 RAL-303_100b 3655 chr3R 1446699 1446701 chr3R 2999354 2999355 invader2 7 1552654 42.5 50.5 46.5 0.1 1552656 chr3R 1446699 intron CG40155 + chr3R 2223027 intergenic not near genes chr3R 2999355 intron CG42618 - chr3R_7_2220001 chr3R_2220001 RAL-303_100b 3656 chr3R 3178675 3178765 chr3R 3595184 3595257 20 416503 41.0 60.0 50.5 0.4 416582 chr3R 3178675 intron CG42617 - chr3R 3386966 intergenic not near genes chr3R 3595257 intergenic not near genes chr3R_20_3385001 chr3R_3385001 RAL-303_100b 3657 chr3R 4063787 4063837 chr3R 4069091 4069099 16 5297 27.5 45.0 36.2 0.4 5312 chr3R 4063787 intergenic not near genes chr3R 4066443 intergenic not near genes chr3R 4069099 intergenic not near genes chr3R_16_4065001 chr3R_4065001 RAL-303_100b 3658 chr3R 3989292 3989307 chr3R 4068941 4068951 mdg1 11 79648 43.5 47.5 45.5 0.2 79659 chr3R 3989292 intergenic not near genes chr3R 4029122 intergenic not near genes chr3R 4068951 intergenic not near genes chr3R_11_4025001 chr3R_4025001 RAL-303_100b 3659 chr3R 4063888 4063912 chr3R 4069091 4069100 5 5196 52.0 45.0 48.5 0.1 5212 chr3R 4063888 intergenic not near genes chr3R 4066494 intergenic not near genes chr3R 4069100 intergenic not near genes chr3R_5_4065001 chr3R_4065001 RAL-303_100b 3660 chr3R 4105017 4105064 chr3R 4110246 4110293 copia 21 5226 13.5 12.0 12.8 1.5 5276 chr3R 4105017 intergenic not near genes chr3R 4107655 intergenic not near genes chr3R 4110293 intergenic not near genes chr3R_21_4105001 chr3R_4105001 RAL-303_100b 3661 chr3R 4132876 4132930 chr3R 4133055 4133109 41 178 6.0 9.0 7.5 4.8 233 chr3R 4132876 intron Gfat1 + chr3R 4132992 intron Gfat1 + chr3R 4133109 intron Gfat1 + chr3R_41_4130001 chr3R_4130001 RAL-303_100b 3662 chr3R 4206044 4206097 chr3R 4211644 4211697 mdg3 44 5596 16.0 10.0 13.0 3.1 5653 chr3R 4206044 intron CG14636 - chr3R 4208870 intron CG14636 - chr3R 4211697 intron CG14636 - chr3R_44_4205001 chr3R_4205001 RAL-303_100b 3663 chr3R 4366734 4366789 chr3R 4375142 4375197 roo 65 8406 15.0 14.0 14.5 4.2 8463 chr3R 4366734 3` UTR CG1090 + chr3R 4370966 intergenic not near genes chr3R 4375197 5` UTR CR44922 + chr3R_65_4370001 chr3R_4370001 RAL-303_100b 3664 chr3R 4408390 4408434 chr3R 4412719 4412763 Juan 55 4328 26.5 21.5 24.0 2.2 4373 chr3R 4408390 intron CG32944 - chr3R 4410576 intron CG32944 - chr3R 4412763 intron CG32944 - chr3R_55_4410001 chr3R_4410001 RAL-303_100b 3665 chr3R 4512378 4512385 chr3R 4512604 4512610 6 232 44.5 0.0 22.2 0.3 232 chr3R 4512378 intron CG34357 - chr3R 4512494 intron CG34357 - chr3R 4512610 intron CG34357 - chr3R_6_4510001 chr3R_4510001 RAL-303_100b 3666 chr3R 4581949 4582003 chr3R 4585310 4585364 44 3362 84.0 123.0 103.5 0.4 3415 chr3R 4581949 intergenic not near genes chr3R 4583656 intergenic not near genes chr3R 4585364 3` UTR CR45558 - chr3R_44_4580001 chr3R_4580001 RAL-303_100b 3667 chr3R 4609521 4609580 chr3R 4610710 4610768 1360 67 1186 10.5 18.0 14.2 4.4 1247 chr3R 4609521 intergenic not near genes chr3R 4610144 intergenic not near genes chr3R 4610768 intergenic not near genes chr3R_67_4610001 chr3R_4610001 RAL-303_100b 3668 chr3R 4657986 4658003 chr3R 4658428 4658445 7 442 8.0 10.5 9.2 0.7 459 chr3R 4657986 intergenic spartin + chr3R 4658216 intergenic spartin + chr3R 4658445 intergenic spartin + chr3R_7_4655001 chr3R_4655001 RAL-303_100b 3669 chr3R 4658004 4658036 chr3R 4658421 4658478 21 440 3.5 7.5 5.5 3.2 474 chr3R 4658004 intergenic spartin + chr3R 4658241 intergenic spartin + chr3R 4658478 intergenic spartin + chr3R_21_4655001 chr3R_4655001 RAL-303_100b 3670 chr3R 4722316 4722372 chr3R 4722478 4722534 51 160 18.5 16.5 17.5 2.8 218 chr3R 4722316 intron Nep2 - chr3R 4722425 intron Nep2 - chr3R 4722534 intron Nep2 - chr3R_51_4720001 chr3R_4720001 RAL-303_100b 3671 chr3R 4739092 4739146 chr3R 4739194 4739248 66 99 18.5 19.0 18.8 3.3 156 chr3R 4739092 intron tacc - chr3R 4739170 intron tacc - chr3R 4739248 intron tacc - chr3R_66_4735001 chr3R_4735001 RAL-303_100b 3672 chr3R 4769135 4769163 chr3R 4769238 4769266 25 103 34.0 14.5 24.2 1.0 131 chr3R 4769135 intron,intron atms +,CG44098 - chr3R 4769200 intron,intron atms +,CG44098 - chr3R 4769266 intron,intron atms +,CG44098 - chr3R_25_4765001 chr3R_4765001 RAL-303_100b 3673 chr3R 4769166 4769189 chr3R 4769236 4769292 25 97 22.5 13.5 18.0 1.3 126 chr3R 4769166 intron,intron atms +,CG44098 - chr3R 4769229 intron,intron atms +,CG44098 - chr3R 4769292 intron,intron atms +,CG44098 - chr3R_25_4765001 chr3R_4765001 RAL-303_100b 3674 chr3R 4887459 4887510 chr3R 4894854 4894911 rover 37 7397 14.5 14.5 14.5 2.4 7452 chr3R 4887459 intergenic not near genes chr3R 4891185 intergenic not near genes chr3R 4894911 intergenic not near genes chr3R_37_4890001 chr3R_4890001 RAL-303_100b 3675 chr3R 4896267 4896324 chr3R 4896385 4896442 41 116 12.0 12.0 12.0 3.2 175 chr3R 4896267 intergenic CR45580 + chr3R 4896354 intergenic CR45580 + chr3R 4896442 5` UTR CR45580 + chr3R_41_4895001 chr3R_4895001 RAL-303_100b 3676 chr3R 4896690 4896702 chr3R 4896793 4896800 11 102 23.0 16.0 19.5 0.5 110 chr3R 4896690 5` UTR CR45580 + chr3R 4896745 5` UTR CR45580 + chr3R 4896800 5` UTR CR45580 + chr3R_11_4895001 chr3R_4895001 RAL-303_100b 3677 chr3R 4896703 4896721 chr3R 4896788 4896824 17 94 14.0 12.0 13.0 1.2 121 chr3R 4896703 5` UTR CR45580 + chr3R 4896764 5` UTR CR45580 + chr3R 4896824 5` UTR CR45580 + chr3R_17_4895001 chr3R_4895001 RAL-303_100b 3678 chr3R 4948354 4948392 chr3R 4949001 4949039 28 645 58.0 48.0 53.0 0.5 685 chr3R 4948354 intergenic snRNA:U1:82Eb -,UbcD6 - chr3R 4948696 intergenic UbcD6 - chr3R 4949039 3` UTR UbcD6 - chr3R_28_4945001 chr3R_4945001 RAL-303_100b 3679 chr3R 4965981 4966036 chr3R 4966098 4966153 55 113 12.5 8.5 10.5 4.8 172 chr3R 4965981 intron CG1124 + chr3R 4966067 intron CG1124 + chr3R 4966153 intron CG1124 + chr3R_55_4965001 chr3R_4965001 RAL-303_100b 3680 chr3R 4972940 4972943 chr3R 4973084 4973087 jockey 5 144 32.5 14.5 23.5 0.2 147 chr3R 4972940 intergenic not near genes chr3R 4973014 intergenic not near genes chr3R 4973087 intergenic not near genes chr3R_5_4970001 chr3R_4970001 RAL-303_100b 3681 chr3R 4984901 4984904 chr3R 4985030 4985033 5 129 19.5 30.0 24.8 0.2 132 chr3R 4984901 3` UTR CR43424 - chr3R 4984967 3` UTR CR43424 - chr3R 4985033 3` UTR CR43424 - chr3R_5_4980001 chr3R_4980001 RAL-303_100b 3682 chr3R 4984906 4984917 chr3R 4985008 4985046 8 123 14.5 19.0 16.8 0.4 140 chr3R 4984906 3` UTR CR43424 - chr3R 4984976 3` UTR CR43424 - chr3R 4985046 3` UTR CR43424 - chr3R_8_4980001 chr3R_4980001 RAL-303_100b 3683 chr3R 5045820 5045876 chr3R 5052947 5053003 HMS-Beagle 38 7126 14.5 11.5 13.0 2.7 7183 chr3R 5045820 3` UTR CR43635 - chr3R 5049412 intergenic not near genes chr3R 5053003 intergenic CR45588 - chr3R_38_5045001 chr3R_5045001 RAL-303_100b 3684 chr3R 5067956 5067983 chr3R 5073498 5073525 mdg3 35 5541 36.5 20.5 28.5 1.2 5569 chr3R 5067956 intergenic not near genes chr3R 5070740 intergenic not near genes chr3R 5073525 intergenic not near genes chr3R_35_5070001 chr3R_5070001 RAL-303_100b 3685 chr3R 5067984 5068014 chr3R 5073496 5073556 mdg3 33 5536 19.5 20.0 19.8 1.6 5572 chr3R 5067984 intergenic not near genes chr3R 5070770 intergenic not near genes chr3R 5073556 intergenic not near genes chr3R_33_5070001 chr3R_5070001 RAL-303_100b 3686 chr3R 5104365 5104419 chr3R 5104696 5104750 51 329 15.0 17.5 16.2 3.0 385 chr3R 5104365 intergenic not near genes chr3R 5104558 intergenic not near genes chr3R 5104750 intergenic not near genes chr3R_51_5100001 chr3R_5100001 RAL-303_100b 3687 chr3R 5113538 5113571 chr3R 5113643 5113674 41 104 26.5 26.5 26.5 1.5 136 chr3R 5113538 intergenic not near genes chr3R 5113606 intergenic not near genes chr3R 5113674 intergenic not near genes chr3R_41_5110001 chr3R_5110001 RAL-303_100b 3688 chr3R 5162910 5162970 chr3R 5163087 5163122 65 175 11.5 16.5 14.0 4.3 212 chr3R 5162910 intron dpr16 + chr3R 5163016 intron dpr16 + chr3R 5163122 intron dpr16 + chr3R_65_5160001 chr3R_5160001 RAL-303_100b 3689 chr3R 5198947 5198965 chr3R 5199056 5199074 16 109 42.0 22.5 32.2 0.5 127 chr3R 5198947 intron cno - chr3R 5199010 intron cno - chr3R 5199074 intron cno - chr3R_16_5195001 chr3R_5195001 RAL-303_100b 3690 chr3R 5198966 5198997 chr3R 5199049 5199086 36 105 23.5 16.0 19.8 1.7 120 chr3R 5198966 intron cno - chr3R 5199026 intron cno - chr3R 5199086 intron cno - chr3R_36_5195001 chr3R_5195001 RAL-303_100b 3691 chr3R 5255217 5255230 chr3R 5255358 5255371 10 141 46.5 10.0 28.2 0.3 154 chr3R 5255217 exon CG1113 + chr3R 5255294 exon CG1113 + chr3R 5255371 exon CG1113 + chr3R_10_5255001 chr3R_5255001 RAL-303_100b 3692 chr3R 5255231 5255232 chr3R 5255357 5255357 5 133 43.5 10.0 26.8 0.2 126 chr3R 5255231 exon CG1113 + chr3R 5255294 exon CG1113 + chr3R 5255357 exon CG1113 + chr3R_5_5255001 chr3R_5255001 RAL-303_100b 3693 chr3R 5255233 5255272 chr3R 5255353 5255393 47 135 17.0 10.0 13.5 3.2 160 chr3R 5255233 exon CG1113 + chr3R 5255313 exon CG1113 + chr3R 5255393 exon CG1113 + chr3R_47_5255001 chr3R_5255001 RAL-303_100b 3694 chr3R 5278067 5278121 chr3R 5278168 5278212 48 103 15.0 16.5 15.8 2.9 145 chr3R 5278067 intron mtd - chr3R 5278140 intron mtd - chr3R 5278212 intron mtd - chr3R_48_5275001 chr3R_5275001 RAL-303_100b 3695 chr3R 5282962 5282980 chr3R 5283068 5283081 14 102 30.0 31.5 30.8 0.4 119 chr3R 5282962 intron mtd - chr3R 5283022 intron mtd - chr3R 5283081 intron mtd - chr3R_14_5280001 chr3R_5280001 RAL-303_100b 3696 chr3R 5437938 5437989 chr3R 5438073 5438124 56 133 13.5 15.0 14.2 3.7 186 chr3R 5437938 intron CG14669 + chr3R 5438031 intron CG14669 + chr3R 5438124 intron CG14669 + chr3R_56_5435001 chr3R_5435001 RAL-303_100b 3697 chr3R 5445934 5445993 chr3R 5452419 5452478 Burdock 55 6483 13.5 19.0 16.2 3.2 6544 chr3R 5445934 intron CG14669 + chr3R 5449206 intron CG14669 + chr3R 5452478 intron CG14669 + chr3R_55_5445001 chr3R_5445001 RAL-303_100b 3698 chr3R 5497047 5497091 chr3R 5497896 5497946 46 850 133.0 154.5 143.8 0.3 899 chr3R 5497047 intron CG31547 - chr3R 5497496 intron CG31547 - chr3R 5497946 intron CG31547 - chr3R_46_5495001 chr3R_5495001 RAL-303_100b 3699 chr3R 5502610 5502614 chr3R 5502696 5502697 6 97 18.5 30.5 24.5 0.2 87 chr3R 5502610 5` UTR CG31547 - chr3R 5502654 5` UTR CG31547 - chr3R 5502697 5` UTR CG31547 - chr3R_6_5500001 chr3R_5500001 RAL-303_100b 3700 chr3R 5502615 5502616 chr3R 5502689 5502710 5 86 16.0 25.5 20.8 0.2 95 chr3R 5502615 5` UTR CG31547 - chr3R 5502662 5` UTR CG31547 - chr3R 5502710 intergenic CG31547 - chr3R_5_5500001 chr3R_5500001 RAL-303_100b 3701 chr3R 5502617 5502619 chr3R 5502688 5502723 8 98 14.0 25.5 19.8 0.4 106 chr3R 5502617 5` UTR CG31547 - chr3R 5502670 5` UTR CG31547 - chr3R 5502723 intergenic CG31547 - chr3R_8_5500001 chr3R_5500001 RAL-303_100b 3702 chr3R 5515111 5515121 chr3R 5515213 5515223 9 102 39.5 23.0 31.2 0.3 112 chr3R 5515111 intron Nmdar1 - chr3R 5515167 intron Nmdar1 - chr3R 5515223 intron Nmdar1 - chr3R_9_5515001 chr3R_5515001 RAL-303_100b 3703 chr3R 5515123 5515166 chr3R 5515210 5515268 48 99 17.0 24.0 20.5 2.2 145 chr3R 5515123 intron Nmdar1 - chr3R 5515196 intron Nmdar1 - chr3R 5515268 intron Nmdar1 - chr3R_48_5515001 chr3R_5515001 RAL-303_100b 3704 chr3R 5726078 5726108 chr3R 5726265 5726295 18 186 23.0 16.5 19.8 0.9 217 chr3R 5726078 intergenic not near genes chr3R 5726186 intergenic not near genes chr3R 5726295 intergenic not near genes chr3R_18_5725001 chr3R_5725001 RAL-303_100b 3705 chr3R 5726109 5726124 chr3R 5726260 5726311 13 181 17.5 15.0 16.2 0.8 202 chr3R 5726109 intergenic not near genes chr3R 5726210 intergenic not near genes chr3R 5726311 intergenic not near genes chr3R_13_5725001 chr3R_5725001 RAL-303_100b 3706 chr3R 5745988 5746045 chr3R 5746254 5746311 pogo 59 265 11.5 16.5 14.0 3.9 323 chr3R 5745988 3` UTR Madm + chr3R 5746150 3` UTR Madm + chr3R 5746311 3` UTR Madm + chr3R_59_5745001 chr3R_5745001 RAL-303_100b 3707 chr3R 5746989 5747005 chr3R 5753205 5753221 diver 14 6216 32.5 13.0 22.8 0.6 6232 chr3R 5746989 intergenic Madm + chr3R 5750105 intergenic not near genes chr3R 5753221 intergenic CG2091 - chr3R_14_5750001 chr3R_5750001 RAL-303_100b 3708 chr3R 5747006 5747044 chr3R 5753202 5753260 diver 32 6213 13.0 11.5 12.2 2.4 6254 chr3R 5747006 intergenic Madm + chr3R 5750133 intergenic not near genes chr3R 5753260 intergenic CG2091 - chr3R_32_5750001 chr3R_5750001 RAL-303_100b 3709 chr3R 5772350 5772408 chr3R 5772533 5772591 57 182 13.0 11.5 12.2 4.3 241 chr3R 5772350 intron CG2082 - chr3R 5772470 intron CG2082 - chr3R 5772591 intron CG2082 - chr3R_57_5770001 chr3R_5770001 RAL-303_100b 3710 chr3R 5809088 5809145 chr3R 5809353 5809381 pogo 50 261 12.0 13.5 12.8 3.6 293 chr3R 5809088 3` UTR CG11000 + chr3R 5809234 3` UTR CG11000 + chr3R 5809381 3` UTR CG11000 + chr3R_50_5805001 chr3R_5805001 RAL-303_100b 3711 chr3R 5822359 5822408 chr3R 5823551 5823593 1360 59 1190 16.5 22.5 19.5 2.9 1234 chr3R 5822359 3` UTR CG2023 - chr3R 5822976 3` UTR CG2023 - chr3R 5823593 3` UTR CG2023 - chr3R_59_5820001 chr3R_5820001 RAL-303_100b 3712 chr3R 5836177 5836182 chr3R 5836306 5836311 7 129 48.0 50.5 49.2 0.1 134 chr3R 5836177 intron,3` UTR CG1208 +,CR45192 - chr3R 5836244 intron CG1208 + chr3R 5836311 intron CG1208 + chr3R_7_5835001 chr3R_5835001 RAL-303_100b 3713 chr3R 5893144 5893204 chr3R 5893341 5893401 57 194 12.5 9.5 11.0 4.8 257 chr3R 5893144 intron CG34113 - chr3R 5893272 intron CG34113 - chr3R 5893401 intron CG34113 - chr3R_57_5890001 chr3R_5890001 RAL-303_100b 3714 chr3R 5927541 5927557 chr3R 5927804 5927822 pogo 9 262 42.0 20.0 31.0 0.3 281 chr3R 5927541 intron CG34113 - chr3R 5927682 intron CG34113 - chr3R 5927822 intron CG34113 - chr3R_9_5925001 chr3R_5925001 RAL-303_100b 3715 chr3R 5927559 5927590 chr3R 5927802 5927844 pogo 49 256 18.5 19.0 18.8 2.5 285 chr3R 5927559 intron CG34113 - chr3R 5927702 intron CG34113 - chr3R 5927844 intron CG34113 - chr3R_49_5925001 chr3R_5925001 RAL-303_100b 3716 chr3R 5988879 5988884 chr3R 5989104 5989109 6 226 35.5 12.0 23.8 0.2 230 chr3R 5988879 intergenic CR44927 + chr3R 5988994 intergenic CR44927 + chr3R 5989109 intergenic CR44927 + chr3R_6_5985001 chr3R_5985001 RAL-303_100b 3717 chr3R 5988886 5988931 chr3R 5989101 5989157 30 224 16.0 11.0 13.5 2.1 271 chr3R 5988886 intergenic CR44927 + chr3R 5989022 intergenic CR44927 + chr3R 5989157 intergenic CR44927 + chr3R_30_5985001 chr3R_5985001 RAL-303_100b 3718 chr3R 6015565 6015580 chr3R 6015667 6015682 16 101 1.5 41.5 21.5 0.7 117 chr3R 6015565 intergenic not near genes chr3R 6015624 intergenic not near genes chr3R 6015682 intergenic not near genes chr3R_16_6015001 chr3R_6015001 RAL-303_100b 3719 chr3R 6015944 6015993 chr3R 6024470 6024510 Tirant 44 8523 15.0 14.5 14.8 2.8 8566 chr3R 6015944 intergenic not near genes chr3R 6020227 intergenic not near genes chr3R 6024510 intergenic not near genes chr3R_44_6020001 chr3R_6020001 RAL-303_100b 3720 chr3R 6061151 6061204 chr3R 6061293 6061346 58 140 63.5 32.5 48.0 1.2 195 chr3R 6061151 intergenic not near genes chr3R 6061248 intergenic not near genes chr3R 6061346 intergenic not near genes chr3R_58_6060001 chr3R_6060001 RAL-303_100b 3721 chr3R 6060855 6060914 chr3R 6061207 6061266 59 359 138.0 79.0 108.5 0.5 411 chr3R 6060855 intergenic not near genes chr3R 6061060 intergenic not near genes chr3R 6061266 intergenic not near genes chr3R_59_6060001 chr3R_6060001 RAL-303_100b 3722 chr3R 6076494 6076544 chr3R 6076622 6076662 42 126 15.0 0.0 7.5 4.9 168 chr3R 6076494 intergenic Or83c - chr3R 6076578 intergenic Or83c - chr3R 6076662 intergenic Or83c - chr3R_42_6075001 chr3R_6075001 RAL-303_100b 3723 chr3R 6090420 6090420 chr3R 10451877 10451877 5 4361457 64.0 80.0 72.0 0.1 4361457 chr3R 6090420 intron Gasp - chr3R 8271148 intergenic not near genes chr3R 10451877 intergenic not near genes chr3R_5_8270001 chr3R_8270001 RAL-303_100b 3724 chr3R 6119109 6119157 chr3R 6119219 6119268 36 108 4.5 12.0 8.2 3.9 159 chr3R 6119109 intergenic not near genes chr3R 6119188 intergenic not near genes chr3R 6119268 intergenic not near genes chr3R_36_6115001 chr3R_6115001 RAL-303_100b 3725 chr3R 6121164 6121167 chr3R 6121407 6121410 BS 6 243 4.0 19.0 11.5 0.5 246 chr3R 6121164 intergenic not near genes chr3R 6121287 intergenic not near genes chr3R 6121410 intergenic not near genes chr3R_6_6120001 chr3R_6120001 RAL-303_100b 3726 chr3R 6121168 6121168 chr3R 6121405 6121411 BS 4 242 3.5 17.5 10.5 0.3 243 chr3R 6121168 intergenic not near genes chr3R 6121290 intergenic not near genes chr3R 6121411 intergenic not near genes chr3R_4_6120001 chr3R_6120001 RAL-303_100b 3727 chr3R 6121169 6121186 chr3R 6121401 6121419 BS 17 239 0.5 16.0 8.2 1.8 250 chr3R 6121169 intergenic not near genes chr3R 6121294 intergenic not near genes chr3R 6121419 intergenic not near genes chr3R_17_6120001 chr3R_6120001 RAL-303_100b 3728 chr3R 6158489 6158540 chr3R 6167097 6167148 Tirant 23 8604 10.5 19.5 15.0 1.4 8659 chr3R 6158489 intergenic not near genes chr3R 6162818 intergenic not near genes chr3R 6167148 intergenic CG1077 + chr3R_23_6160001 chr3R_6160001 RAL-303_100b 3729 chr3R 6171122 6171180 chr3R 6171509 6171567 40 385 16.5 13.0 14.8 2.5 445 chr3R 6171122 intergenic not near genes chr3R 6171344 intergenic not near genes chr3R 6171567 intergenic not near genes chr3R_40_6170001 chr3R_6170001 RAL-303_100b 3730 chr3R 6175149 6175159 chr3R 6182446 6182456 HMS-Beagle2 7 7297 40.0 18.5 29.2 0.2 7307 chr3R 6175149 intergenic Osi1 + chr3R 6178802 intron CR45194 + chr3R 6182456 intergenic CR45194 + chr3R_7_6175001 chr3R_6175001 RAL-303_100b 3731 chr3R 6175161 6175207 chr3R 6182444 6182446 HMS-Beagle2 31 7290 15.5 16.0 15.8 1.8 7285 chr3R 6175161 intergenic Osi1 + chr3R 6178804 intron CR45194 + chr3R 6182446 intergenic CR45194 + chr3R_31_6175001 chr3R_6175001 RAL-303_100b 3732 chr3R 6226595 6226611 chr3R 6226708 6226724 17 112 36.5 12.0 24.2 0.7 129 chr3R 6226595 intergenic not near genes chr3R 6226660 intergenic not near genes chr3R 6226724 intergenic not near genes chr3R_17_6225001 chr3R_6225001 RAL-303_100b 3733 chr3R 6226614 6226650 chr3R 6226706 6226762 23 108 17.5 11.0 14.2 1.5 148 chr3R 6226614 intergenic not near genes chr3R 6226688 intergenic not near genes chr3R 6226762 intergenic not near genes chr3R_23_6225001 chr3R_6225001 RAL-303_100b 3734 chr3R 6414048 6414065 chr3R 6414154 6414159 4 102 36.5 46.5 41.5 0.1 111 chr3R 6414048 intron gpp + chr3R 6414104 intron gpp + chr3R 6414159 intron gpp + chr3R_4_6410001 chr3R_6410001 RAL-303_100b 3735 chr3R 6420970 6420999 chr3R 6421106 6421129 5 131 5.5 7.5 6.5 0.7 159 chr3R 6420970 intron gpp + chr3R 6421050 intron gpp + chr3R 6421129 intron gpp + chr3R_5_6420001 chr3R_6420001 RAL-303_100b 3736 chr3R 6461553 6461613 chr3R 6461659 6461718 41 105 11.0 16.5 13.8 2.8 165 chr3R 6461553 intergenic not near genes chr3R 6461636 intergenic not near genes chr3R 6461718 intergenic not near genes chr3R_41_6460001 chr3R_6460001 RAL-303_100b 3737 chr3R 6509998 6510053 chr3R 6515104 6515143 jockey 37 5104 15.0 14.5 14.8 2.3 5145 chr3R 6509998 intergenic not near genes chr3R 6512570 intergenic not near genes chr3R 6515143 intergenic not near genes chr3R_37_6510001 chr3R_6510001 RAL-303_100b 3738 chr3R 6519089 6519145 chr3R 6519222 6519281 36 133 18.0 10.5 14.2 2.4 192 chr3R 6519089 intergenic not near genes chr3R 6519185 intergenic not near genes chr3R 6519281 intergenic not near genes chr3R_36_6515001 chr3R_6515001 RAL-303_100b 3739 chr3R 6538178 6538233 chr3R 6538301 6538348 38 119 12.5 13.0 12.8 2.8 170 chr3R 6538178 intron dpr11 - chr3R 6538263 intron dpr11 - chr3R 6538348 exon dpr11 - chr3R_38_6535001 chr3R_6535001 RAL-303_100b 3740 chr3R 6550297 6550352 chr3R 6550403 6550457 63 100 19.5 13.5 16.5 3.6 160 chr3R 6550297 intron dpr11 - chr3R 6550377 intron dpr11 - chr3R 6550457 intron dpr11 - chr3R_63_6550001 chr3R_6550001 RAL-303_100b 3741 chr3R 6551091 6551109 chr3R 6551210 6551222 21 117 36.0 22.5 29.2 0.7 131 chr3R 6551091 intron dpr11 - chr3R 6551156 intron dpr11 - chr3R 6551222 intron dpr11 - chr3R_21_6550001 chr3R_6550001 RAL-303_100b 3742 chr3R 6551111 6551140 chr3R 6551208 6551259 39 116 14.5 21.0 17.8 2.1 148 chr3R 6551111 intron dpr11 - chr3R 6551185 intron dpr11 - chr3R 6551259 intron dpr11 - chr3R_39_6550001 chr3R_6550001 RAL-303_100b 3743 chr3R 6561929 6561947 chr3R 6562038 6562056 14 109 22.0 13.0 17.5 0.8 127 chr3R 6561929 intron dpr11 - chr3R 6561992 intron dpr11 - chr3R 6562056 intron dpr11 - chr3R_14_6560001 chr3R_6560001 RAL-303_100b 3744 chr3R 6561948 6561980 chr3R 6562036 6562089 29 105 11.0 12.5 11.8 2.3 141 chr3R 6561948 intron dpr11 - chr3R 6562018 intron dpr11 - chr3R 6562089 intron dpr11 - chr3R_29_6560001 chr3R_6560001 RAL-303_100b 3745 chr3R 6639885 6639900 chr3R 6639988 6640003 12 102 35.5 0.5 18.0 0.6 118 chr3R 6639885 intergenic not near genes chr3R 6639944 intergenic not near genes chr3R 6640003 intergenic not near genes chr3R_12_6635001 chr3R_6635001 RAL-303_100b 3746 chr3R 6639901 6639927 chr3R 6639987 6640010 18 97 19.0 0.5 9.8 1.7 109 chr3R 6639901 intergenic not near genes chr3R 6639956 intergenic not near genes chr3R 6640010 intergenic not near genes chr3R_18_6635001 chr3R_6635001 RAL-303_100b 3747 chr3R 6688012 6688037 chr3R 6688199 6688224 11 187 8.5 9.0 8.8 1.1 212 chr3R 6688012 3` UTR Ccp84Ag + chr3R 6688118 intergenic Ccp84Ag + chr3R 6688224 intergenic Ccp84Ag + chr3R_11_6685001 chr3R_6685001 RAL-303_100b 3748 chr3R 6697980 6697985 chr3R 6698084 6698089 7 104 39.0 13.5 26.2 0.3 109 chr3R 6697980 intergenic not near genes chr3R 6698034 intergenic not near genes chr3R 6698089 intergenic not near genes chr3R_7_6695001 chr3R_6695001 RAL-303_100b 3749 chr3R 6697988 6698032 chr3R 6698081 6698123 43 103 18.0 16.0 17.0 2.4 135 chr3R 6697988 intergenic not near genes chr3R 6698056 intergenic not near genes chr3R 6698123 intergenic not near genes chr3R_43_6695001 chr3R_6695001 RAL-303_100b 3750 chr3R 6717701 6717702 chr3R 6717851 6717864 5 155 5.5 33.5 19.5 0.2 163 chr3R 6717701 intron pb - chr3R 6717782 intron pb - chr3R 6717864 intron pb - chr3R_5_6715001 chr3R_6715001 RAL-303_100b 3751 chr3R 6717703 6717707 chr3R 6717850 6717869 7 157 0.5 33.0 16.8 0.4 166 chr3R 6717703 intron pb - chr3R 6717786 intron pb - chr3R 6717869 intron pb - chr3R_7_6715001 chr3R_6715001 RAL-303_100b 3752 chr3R 6737476 6737483 chr3R 6739287 6739291 Doc 5 1811 32.5 10.0 21.2 0.2 1815 chr3R 6737476 intron pb - chr3R 6738384 intron pb - chr3R 6739291 intron pb - chr3R_5_6735001 chr3R_6735001 RAL-303_100b 3753 chr3R 6737487 6737530 chr3R 6739284 6739304 Doc 23 1803 10.0 8.5 9.2 2.3 1817 chr3R 6737487 intron pb - chr3R 6738396 intron pb - chr3R 6739304 intron pb - chr3R_23_6735001 chr3R_6735001 RAL-303_100b 3754 chr3R 6743132 6743168 chr3R 6743240 6743276 23 108 7.0 16.0 11.5 1.8 144 chr3R 6743132 intergenic zen2 - chr3R 6743204 3` UTR zen2 - chr3R 6743276 exon zen2 - chr3R_23_6740001 chr3R_6740001 RAL-303_100b 3755 chr3R 6766847 6766851 chr3R 6766945 6766953 4 101 2.0 27.0 14.5 0.3 106 chr3R 6766847 intergenic CR44930 +,CR42721 + chr3R 6766900 intergenic CR42721 +,CR44930 + chr3R 6766953 intergenic CR42721 +,CR44930 + chr3R_4_6765001 chr3R_6765001 RAL-303_100b 3756 chr3R 6773531 6773583 chr3R 6773645 6773697 53 108 16.0 15.0 15.5 3.2 166 chr3R 6773531 intron CR42721 + chr3R 6773614 intron CR42721 + chr3R 6773697 intron CR42721 + chr3R_53_6770001 chr3R_6770001 RAL-303_100b 3757 chr3R 6780423 6780483 chr3R 6780531 6780590 48 107 13.0 11.0 12.0 3.7 167 chr3R 6780423 intergenic not near genes chr3R 6780506 intergenic not near genes chr3R 6780590 intergenic not near genes chr3R_48_6780001 chr3R_6780001 RAL-303_100b 3758 chr3R 6782419 6782467 chr3R 6782515 6782571 50 100 22.5 21.0 21.8 2.2 152 chr3R 6782419 intergenic not near genes chr3R 6782495 intergenic not near genes chr3R 6782571 intergenic not near genes chr3R_50_6780001 chr3R_6780001 RAL-303_100b 3759 chr3R 6803736 6803751 chr3R 6803837 6803851 12 101 0.0 18.5 9.2 1.2 115 chr3R 6803736 intergenic not near genes chr3R 6803794 intergenic not near genes chr3R 6803851 intergenic not near genes chr3R_12_6800001 chr3R_6800001 RAL-303_100b 3760 chr3R 6807238 6807290 chr3R 6807345 6807397 41 107 13.5 10.0 11.8 3.2 159 chr3R 6807238 intergenic not near genes chr3R 6807318 intergenic not near genes chr3R 6807397 intergenic not near genes chr3R_41_6805001 chr3R_6805001 RAL-303_100b 3761 chr3R 6828000 6828037 chr3R 6828101 6828138 26 100 10.5 13.0 11.8 2.0 138 chr3R 6828000 intron Scr - chr3R 6828069 intron Scr - chr3R 6828138 intron Scr - chr3R_26_6825001 chr3R_6825001 RAL-303_100b 3762 chr3R 6856362 6856375 chr3R 6856504 6856517 13 142 24.0 12.0 18.0 0.7 155 chr3R 6856362 intergenic not near genes chr3R 6856440 intergenic not near genes chr3R 6856517 intergenic not near genes chr3R_13_6855001 chr3R_6855001 RAL-303_100b 3763 chr3R 6856376 6856400 chr3R 6856502 6856542 23 139 10.5 10.5 10.5 2.0 166 chr3R 6856376 intergenic not near genes chr3R 6856459 intergenic not near genes chr3R 6856542 intergenic not near genes chr3R_23_6855001 chr3R_6855001 RAL-303_100b 3764 chr3R 6862197 6862250 chr3R 6862309 6862362 40 112 12.0 14.0 13.0 2.9 165 chr3R 6862197 intergenic not near genes chr3R 6862280 intergenic not near genes chr3R 6862362 intergenic not near genes chr3R_40_6860001 chr3R_6860001 RAL-303_100b 3765 chr3R 6891245 6891254 chr3R 6891316 6891355 7 89 11.5 21.0 16.2 0.4 110 chr3R 6891245 intergenic not near genes chr3R 6891300 intergenic not near genes chr3R 6891355 intergenic not near genes chr3R_7_6890001 chr3R_6890001 RAL-303_100b 3766 chr3R 6891256 6891271 chr3R 6891312 6891372 8 81 11.5 19.0 15.2 0.5 116 chr3R 6891256 intergenic not near genes chr3R 6891314 intergenic not near genes chr3R 6891372 intergenic not near genes chr3R_8_6890001 chr3R_6890001 RAL-303_100b 3767 chr3R 6912077 6912133 chr3R 6912212 6912269 10 131 4.5 2.0 3.2 2.4 192 chr3R 6912077 intron Antp - chr3R 6912173 intron Antp - chr3R 6912269 intron Antp - chr3R_10_6910001 chr3R_6910001 RAL-303_100b 3768 chr3R 6923556 6923616 chr3R 6923668 6923726 37 111 6.5 8.5 7.5 4.4 170 chr3R 6923556 intron Antp - chr3R 6923641 intron Antp - chr3R 6923726 intron Antp - chr3R_37_6920001 chr3R_6920001 RAL-303_100b 3769 chr3R 6961164 6961201 chr3R 6961253 6961305 44 99 19.0 22.0 20.5 2.0 141 chr3R 6961164 intron Antp - chr3R 6961234 intron Antp - chr3R 6961305 intron Antp - chr3R_44_6960001 chr3R_6960001 RAL-303_100b 3770 chr3R 6991517 6991518 chr3R 11034423 11034430 4 4042910 41.0 31.0 36.0 0.1 4042913 chr3R 6991517 intron Antp - chr3R 9012974 exon CG11984 - chr3R 11034430 intron CG34114 + chr3R_4_9010001 chr3R_9010001 RAL-303_100b 3771 chr3R 7012179 7012201 chr3R 7012282 7012304 17 101 31.5 14.0 22.8 0.7 125 chr3R 7012179 intergenic not near genes chr3R 7012242 intergenic not near genes chr3R 7012304 intergenic not near genes chr3R_17_7010001 chr3R_7010001 RAL-303_100b 3772 chr3R 7012203 7012233 chr3R 7012281 7012318 32 100 15.5 14.0 14.8 2.0 115 chr3R 7012203 intergenic not near genes chr3R 7012260 intergenic not near genes chr3R 7012318 intergenic not near genes chr3R_32_7010001 chr3R_7010001 RAL-303_100b 3773 chr3R 7051097 7051153 chr3R 7051201 7051257 52 103 11.0 14.5 12.8 3.8 160 chr3R 7051097 intergenic not near genes chr3R 7051177 intergenic not near genes chr3R 7051257 intergenic not near genes chr3R_52_7050001 chr3R_7050001 RAL-303_100b 3774 chr3R 7094694 7094694 chr3R 7773344 7773344 7 678650 73.5 65.5 69.5 0.1 678650 chr3R 7094694 3` UTR e(y)2b + chr3R 7434019 intergenic not near genes chr3R 7773344 intergenic not near genes chr3R_7_7430001 chr3R_7430001 RAL-303_100b 3775 chr3R 7095945 7095950 chr3R 7096055 7096059 8 110 47.0 23.0 35.0 0.2 114 chr3R 7095945 intergenic not near genes chr3R 7096002 intergenic not near genes chr3R 7096059 intergenic not near genes chr3R_8_7095001 chr3R_7095001 RAL-303_100b 3776 chr3R 7095951 7095971 chr3R 7096054 7096076 19 106 37.5 22.0 29.8 0.6 125 chr3R 7095951 intergenic not near genes chr3R 7096014 intergenic not near genes chr3R 7096076 intergenic not near genes chr3R_19_7095001 chr3R_7095001 RAL-303_100b 3777 chr3R 7103904 7103960 chr3R 7104028 7104084 59 122 14.5 16.0 15.2 3.6 180 chr3R 7103904 intron Alh - chr3R 7103994 intron Alh - chr3R 7104084 intron Alh - chr3R_59_7100001 chr3R_7100001 RAL-303_100b 3778 chr3R 7106501 7106537 chr3R 7106607 7106643 36 105 12.0 12.5 12.2 2.7 142 chr3R 7106501 intron Alh - chr3R 7106572 intron Alh - chr3R 7106643 intron Alh - chr3R_36_7105001 chr3R_7105001 RAL-303_100b 3779 chr3R 7121713 7121734 chr3R 7121831 7121852 17 116 17.0 21.0 19.0 0.8 139 chr3R 7121713 exon Alh - chr3R 7121782 intron Alh - chr3R 7121852 intron Alh - chr3R_17_7120001 chr3R_7120001 RAL-303_100b 3780 chr3R 7147079 7147107 chr3R 7147216 7147230 6 134 14.0 19.5 16.8 0.3 151 chr3R 7147079 intron,exon CG2656 +,gfzf - chr3R 7147154 intron,intron CG2656 +,gfzf - chr3R 7147230 intron,intron CG2656 +,gfzf - chr3R_6_7145001 chr3R_7145001 RAL-303_100b 3781 chr3R 7173655 7173707 chr3R 7173759 7173812 32 103 9.0 8.5 8.8 3.3 157 chr3R 7173655 intron sas + chr3R 7173734 intron sas + chr3R 7173812 intron sas + chr3R_32_7170001 chr3R_7170001 RAL-303_100b 3782 chr3R 7206852 7206903 chr3R 7206966 7207017 40 108 4.5 18.0 11.2 3.3 165 chr3R 7206852 intergenic not near genes chr3R 7206934 intergenic CG1288 - chr3R 7207017 intergenic CG1288 - chr3R_40_7205001 chr3R_7205001 RAL-303_100b 3783 chr3R 7372969 7372984 chr3R 7373073 7373084 4 102 34.5 17.0 25.8 0.1 115 chr3R 7372969 intergenic not near genes chr3R 7373026 intergenic not near genes chr3R 7373084 intergenic not near genes chr3R_4_7370001 chr3R_7370001 RAL-303_100b 3784 chr3R 7372997 7373023 chr3R 7373071 7373127 19 95 16.0 16.0 16.0 1.1 130 chr3R 7372997 intergenic not near genes chr3R 7373062 intergenic not near genes chr3R 7373127 intergenic not near genes chr3R_19_7370001 chr3R_7370001 RAL-303_100b 3785 chr3R 7385560 7385572 chr3R 7385661 7385673 11 100 37.5 18.5 28.0 0.4 113 chr3R 7385560 intergenic not near genes chr3R 7385616 intergenic not near genes chr3R 7385673 intergenic not near genes chr3R_11_7385001 chr3R_7385001 RAL-303_100b 3786 chr3R 7385574 7385591 chr3R 7385660 7385692 15 94 27.0 17.0 22.0 0.7 118 chr3R 7385574 intergenic not near genes chr3R 7385633 intergenic not near genes chr3R 7385692 intergenic not near genes chr3R_15_7385001 chr3R_7385001 RAL-303_100b 3787 chr3R 7385592 7385616 chr3R 7385658 7385699 22 88 14.5 16.0 15.2 1.4 107 chr3R 7385592 intergenic not near genes chr3R 7385646 intergenic not near genes chr3R 7385699 intergenic not near genes chr3R_22_7385001 chr3R_7385001 RAL-303_100b 3788 chr3R 7580072 7580087 chr3R 7580176 7580196 4 105 47.5 19.0 33.2 0.1 124 chr3R 7580072 intron CG34127 - chr3R 7580134 intron CG34127 - chr3R 7580196 intron CG34127 - chr3R_4_7580001 chr3R_7580001 RAL-303_100b 3789 chr3R 7601939 7601951 chr3R 7602045 7602057 8 106 25.5 13.0 19.2 0.4 118 chr3R 7601939 intron CG34127 - chr3R 7601998 intron CG34127 - chr3R 7602057 intron CG34127 - chr3R_8_7600001 chr3R_7600001 RAL-303_100b 3790 chr3R 7601955 7601968 chr3R 7602043 7602074 8 102 19.5 13.0 16.2 0.5 119 chr3R 7601955 intron CG34127 - chr3R 7602014 intron CG34127 - chr3R 7602074 intron CG34127 - chr3R_8_7600001 chr3R_7600001 RAL-303_100b 3791 chr3R 7601970 7601987 chr3R 7602038 7602093 10 98 12.5 12.5 12.5 0.7 123 chr3R 7601970 intron CG34127 - chr3R 7602032 intron CG34127 - chr3R 7602093 intron CG34127 - chr3R_10_7600001 chr3R_7600001 RAL-303_100b 3792 chr3R 7676945 7676993 chr3R 7677115 7677127 21 162 27.5 14.5 21.0 1.0 182 chr3R 7676945 intron Nlg1 + chr3R 7677036 intron Nlg1 + chr3R 7677127 intron Nlg1 + chr3R_21_7675001 chr3R_7675001 RAL-303_100b 3793 chr3R 7683639 7683644 chr3R 7683958 7683968 4 322 24.0 20.5 22.2 0.2 329 chr3R 7683639 intron Nlg1 + chr3R 7683804 intron Nlg1 + chr3R 7683968 intron Nlg1 + chr3R_4_7680001 chr3R_7680001 RAL-303_100b 3794 chr3R 7683646 7683680 chr3R 7683947 7683984 32 317 9.0 15.5 12.2 2.4 338 chr3R 7683646 intron Nlg1 + chr3R 7683815 intron Nlg1 + chr3R 7683984 intron Nlg1 + chr3R_32_7680001 chr3R_7680001 RAL-303_100b 3795 chr3R 7694552 7694608 chr3R 7713638 7713686 invader3 22 19085 9.0 10.5 9.8 2.0 19134 chr3R 7694552 3` UTR Nlg1 + chr3R 7704119 intergenic not near genes chr3R 7713686 intergenic not near genes chr3R_22_7700001 chr3R_7700001 RAL-303_100b 3796 chr3R 7726134 7726146 chr3R 7726236 7726248 8 102 32.0 19.0 25.5 0.3 114 chr3R 7726134 intergenic not near genes chr3R 7726191 intergenic not near genes chr3R 7726248 intergenic not near genes chr3R_8_7725001 chr3R_7725001 RAL-303_100b 3797 chr3R 7726150 7726188 chr3R 7726230 7726277 51 97 20.0 20.5 20.2 2.4 127 chr3R 7726150 intergenic not near genes chr3R 7726214 intergenic not near genes chr3R 7726277 intergenic not near genes chr3R_51_7725001 chr3R_7725001 RAL-303_100b 3798 chr3R 7729439 7729498 chr3R 7737402 7737461 Stalker2 63 7962 15.0 14.5 14.8 4.0 8022 chr3R 7729439 intergenic not near genes chr3R 7733450 intergenic not near genes chr3R 7737461 intergenic not near genes chr3R_63_7730001 chr3R_7730001 RAL-303_100b 3799 chr3R 7837998 7838054 chr3R 7838247 7838303 55 246 16.5 13.5 15.0 3.4 305 chr3R 7837998 intron CG34384 + chr3R 7838150 intron CG34384 + chr3R 7838303 intron CG34384 + chr3R_55_7835001 chr3R_7835001 RAL-303_100b 3800 chr3R 7884641 7884700 chr3R 7884744 7884791 47 99 21.0 14.5 17.8 2.5 150 chr3R 7884641 intron CG17816 - chr3R 7884716 intron CG17816 - chr3R 7884791 intron CG17816 - chr3R_47_7880001 chr3R_7880001 RAL-303_100b 3801 chr3R 7948424 7948469 chr3R 7948522 7948571 44 97 14.0 9.0 11.5 3.5 147 chr3R 7948424 intron dsx - chr3R 7948498 intron dsx - chr3R 7948571 intron dsx - chr3R_44_7945001 chr3R_7945001 RAL-303_100b 3802 chr3R 7973295 7973347 chr3R 7974382 7974404 1360 46 1086 12.0 19.5 15.8 2.7 1109 chr3R 7973295 intergenic not near genes chr3R 7973850 intergenic not near genes chr3R 7974404 intergenic CD98hc - chr3R_46_7970001 chr3R_7970001 RAL-303_100b 3803 chr3R 8049024 8049064 chr3R 8049623 8049663 36 597 16.5 6.0 11.2 3.0 639 chr3R 8049024 intron CG43060 + chr3R 8049344 intron,intron CG43060 +,CG43618 + chr3R 8049663 intron CG43060 + chr3R_36_8045001 chr3R_8045001 RAL-303_100b 3804 chr3R 8082561 8082595 chr3R 8082663 8082697 37 101 21.5 25.0 23.2 1.5 136 chr3R 8082561 intron mAChR-B + chr3R 8082629 intron mAChR-B + chr3R 8082697 intron mAChR-B + chr3R_37_8080001 chr3R_8080001 RAL-303_100b 3805 chr3R 8090554 8090571 chr3R 8094082 8094097 297 11 3525 17.0 15.5 16.2 0.6 3543 chr3R 8090554 intergenic CR44330 + chr3R 8092326 intergenic not near genes chr3R 8094097 intergenic CG7900 + chr3R_11_8090001 chr3R_8090001 RAL-303_100b 3806 chr3R 8094386 8094436 chr3R 8099716 8099766 Transpac 43 5328 17.0 14.0 15.5 2.6 5380 chr3R 8094386 intron CG7900 + chr3R 8097076 intron CG7900 + chr3R 8099766 intron CG7900 + chr3R_43_8095001 chr3R_8095001 RAL-303_100b 3807 chr3R 8101738 8101790 chr3R 8104847 8104889 G2 51 3106 14.5 16.0 15.2 3.1 3151 chr3R 8101738 exon CG7900 + chr3R 8103314 intron CG7900 + chr3R 8104889 3` UTR CG7900 + chr3R_51_8100001 chr3R_8100001 RAL-303_100b 3808 chr3R 8107361 8107375 chr3R 8107520 8107534 14 159 34.5 14.0 24.2 0.6 173 chr3R 8107361 intron puc + chr3R 8107448 intron puc + chr3R 8107534 intron puc + chr3R_14_8105001 chr3R_8105001 RAL-303_100b 3809 chr3R 8107377 8107419 chr3R 8107519 8107578 40 156 11.5 13.0 12.2 3.0 201 chr3R 8107377 intron puc + chr3R 8107478 intron puc + chr3R 8107578 intron puc + chr3R_40_8105001 chr3R_8105001 RAL-303_100b 3810 chr3R 8199513 8199541 chr3R 8199844 8199872 25 329 13.5 17.0 15.2 1.5 359 chr3R 8199513 intergenic not near genes chr3R 8199692 intergenic not near genes chr3R 8199872 intergenic not near genes chr3R_25_8195001 chr3R_8195001 RAL-303_100b 3811 chr3R 8207532 8207540 chr3R 8208402 8208405 F-element 4 867 31.0 17.5 24.2 0.2 873 chr3R 8207532 intergenic not near genes chr3R 8207968 intergenic not near genes chr3R 8208405 intergenic not near genes chr3R_4_8205001 chr3R_8205001 RAL-303_100b 3812 chr3R 8207545 8207564 chr3R 8208401 8208428 F-element 15 868 16.5 17.5 17.0 0.8 883 chr3R 8207545 intergenic not near genes chr3R 8207986 intergenic not near genes chr3R 8208428 intergenic not near genes chr3R_15_8205001 chr3R_8205001 RAL-303_100b 3813 chr3R 8207569 8207583 chr3R 8208400 8208453 F-element 14 861 8.5 17.5 13.0 1.0 884 chr3R 8207569 intergenic not near genes chr3R 8208011 intergenic not near genes chr3R 8208453 intergenic not near genes chr3R_14_8205001 chr3R_8205001 RAL-303_100b 3814 chr3R 8304217 8304278 chr3R 8304338 8304357 54 119 11.5 10.0 10.8 4.6 140 chr3R 8304217 3` UTR Sgt1 - chr3R 8304287 3` UTR Sgt1 - chr3R 8304357 3` UTR Sgt1 - chr3R_54_8300001 chr3R_8300001 RAL-303_100b 3815 chr3R 8339241 8339247 chr3R 21907534 21907536 45 13568289 84.5 74.0 79.2 0.6 13568295 chr3R 8339241 intergenic not near genes chr3R 15123388 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_45_15120001 chr3R_15120001 RAL-303_100b 3816 chr3R 8374141 8374175 chr3R 8374281 8374315 32 137 32.0 13.0 22.5 1.4 174 chr3R 8374141 intron CG45263 - chr3R 8374228 intron CG45263 - chr3R 8374315 intron CG45263 - chr3R_32_8370001 chr3R_8370001 RAL-303_100b 3817 chr3R 8402988 8402993 chr3R 8412179 8412184 roo 7 9190 41.0 20.5 30.8 0.2 9196 chr3R 8402988 intron CG45263 - chr3R 8407586 intron CG45263 - chr3R 8412184 intron CG45263 - chr3R_7_8405001 chr3R_8405001 RAL-303_100b 3818 chr3R 8402995 8403039 chr3R 8412172 8412208 roo 46 9183 17.0 18.0 17.5 2.5 9213 chr3R 8402995 intron CG45263 - chr3R 8407602 intron CG45263 - chr3R 8412208 intron CG45263 - chr3R_46_8405001 chr3R_8405001 RAL-303_100b 3819 chr3R 8478054 8478110 chr3R 8478159 8478215 47 99 5.0 15.5 10.2 4.2 161 chr3R 8478054 intergenic CG45263 - chr3R 8478134 intergenic not near genes chr3R 8478215 intergenic not near genes chr3R_47_8475001 chr3R_8475001 RAL-303_100b 3820 chr3R 8552345 8552356 chr3R 8552450 8552461 10 104 39.5 16.0 27.8 0.3 116 chr3R 8552345 intergenic Or85d + chr3R 8552403 intergenic Or85d + chr3R 8552461 intergenic Or85d + chr3R_10_8550001 chr3R_8550001 RAL-303_100b 3821 chr3R 8552357 8552402 chr3R 8552446 8552507 40 99 9.0 14.0 11.5 3.2 150 chr3R 8552357 intergenic Or85d + chr3R 8552432 intergenic Or85d + chr3R 8552507 intergenic Or85d + chr3R_40_8550001 chr3R_8550001 RAL-303_100b 3822 chr3R 8570452 8570509 chr3R 8575113 8575158 HMS-Beagle 44 4653 4.5 8.5 6.5 5.9 4706 chr3R 8570452 intergenic not near genes chr3R 8572805 intergenic not near genes chr3R 8575158 intergenic not near genes chr3R_44_8570001 chr3R_8570001 RAL-303_100b 3823 chr3R 8601750 8601800 chr3R 8610928 8610973 roo 40 9174 26.5 16.0 21.2 1.8 9223 chr3R 8601750 intron 5-HT2B + chr3R 8606362 intron 5-HT2B + chr3R 8610973 intron 5-HT2B + chr3R_40_8605001 chr3R_8605001 RAL-303_100b 3824 chr3R 8685270 8685315 chr3R 8685395 8685440 30 124 9.0 16.0 12.5 2.2 170 chr3R 8685270 intron CR44937 - chr3R 8685355 intron CR44937 - chr3R 8685440 intron CR44937 - chr3R_30_8685001 chr3R_8685001 RAL-303_100b 3825 chr3R 8707333 8707365 chr3R 8709799 8709830 jockey 41 2463 26.5 22.5 24.5 1.6 2497 chr3R 8707333 intergenic not near genes chr3R 8708582 intergenic not near genes chr3R 8709830 intergenic not near genes chr3R_41_8705001 chr3R_8705001 RAL-303_100b 3826 chr3R 8707366 8707383 chr3R 8709797 8709849 jockey 23 2463 14.0 22.5 18.2 1.2 2483 chr3R 8707366 intergenic not near genes chr3R 8708608 intergenic not near genes chr3R 8709849 intergenic not near genes chr3R_23_8705001 chr3R_8705001 RAL-303_100b 3827 chr3R 8885262 8885276 chr3R 8885381 8885395 12 119 19.5 19.5 19.5 0.6 133 chr3R 8885262 intron pyd - chr3R 8885328 intron pyd - chr3R 8885395 intron pyd - chr3R_12_8885001 chr3R_8885001 RAL-303_100b 3828 chr3R 8898182 8898212 chr3R 8913801 8913829 297 23 15617 19.0 13.0 16.0 1.4 15647 chr3R 8898182 intron pyd - chr3R 8906006 intron pyd - chr3R 8913829 intron pyd - chr3R_23_8905001 chr3R_8905001 RAL-303_100b 3829 chr3R 8917864 8917911 chr3R 8917969 8918016 45 105 10.0 17.0 13.5 3.1 152 chr3R 8917864 intron pyd - chr3R 8917940 intron pyd - chr3R 8918016 intron pyd - chr3R_45_8915001 chr3R_8915001 RAL-303_100b 3830 chr3R 8979860 8979918 chr3R 8979968 8980025 36 105 9.0 14.5 11.8 2.8 165 chr3R 8979860 intergenic not near genes chr3R 8979942 intergenic not near genes chr3R 8980025 intergenic not near genes chr3R_36_8975001 chr3R_8975001 RAL-303_100b 3831 chr3R 9036349 9036403 chr3R 9036452 9036506 36 102 18.5 10.5 14.5 2.3 157 chr3R 9036349 intron neur - chr3R 9036428 intron neur - chr3R 9036506 intron neur - chr3R_36_9035001 chr3R_9035001 RAL-303_100b 3832 chr3R 9043718 9043769 chr3R 9043827 9043866 40 106 18.5 12.5 15.5 2.4 148 chr3R 9043718 intron Nmdmc - chr3R 9043792 intron Nmdmc - chr3R 9043866 intron Nmdmc - chr3R_40_9040001 chr3R_9040001 RAL-303_100b 3833 chr3R 9082018 9082073 chr3R 9082136 9082192 54 116 7.0 8.5 7.8 6.1 174 chr3R 9082018 intron pum - chr3R 9082105 intron pum - chr3R 9082192 intron pum - chr3R_54_9080001 chr3R_9080001 RAL-303_100b 3834 chr3R 9104450 9104499 chr3R 9104565 9104605 36 112 11.5 10.5 11.0 3.0 155 chr3R 9104450 intron pum - chr3R 9104528 intron pum - chr3R 9104605 intron pum - chr3R_36_9100001 chr3R_9100001 RAL-303_100b 3835 chr3R 9108841 9108884 chr3R 9108942 9108985 36 100 16.0 16.5 16.2 2.1 144 chr3R 9108841 intron pum - chr3R 9108913 intron pum - chr3R 9108985 intron pum - chr3R_36_9105001 chr3R_9105001 RAL-303_100b 3836 chr3R 9170887 9170943 chr3R 9171018 9171074 54 130 11.0 16.5 13.8 3.6 187 chr3R 9170887 intron pum - chr3R 9170980 intron pum - chr3R 9171074 intron pum - chr3R_54_9170001 chr3R_9170001 RAL-303_100b 3837 chr3R 9204228 9204280 chr3R 9204335 9204392 62 108 17.0 5.5 11.2 5.1 164 chr3R 9204228 intron pum - chr3R 9204310 intron pum - chr3R 9204392 intron pum - chr3R_62_9200001 chr3R_9200001 RAL-303_100b 3838 chr3R 9277532 9277581 chr3R 9277672 9277714 64 138 15.0 14.0 14.5 4.1 182 chr3R 9277532 intergenic not near genes chr3R 9277623 intergenic not near genes chr3R 9277714 intergenic not near genes chr3R_64_9275001 chr3R_9275001 RAL-303_100b 3839 chr3R 9278764 9278816 chr3R 9284041 9284054 Rt1a 53 5282 16.5 21.0 18.8 2.7 5290 chr3R 9278764 intergenic not near genes chr3R 9281409 intergenic not near genes chr3R 9284054 intergenic not near genes chr3R_53_9280001 chr3R_9280001 RAL-303_100b 3840 chr3R 9304503 9304515 chr3R 9311815 9311827 Stalker4 5 7309 59.0 14.5 36.8 0.1 7324 chr3R 9304503 intron CG8861 - chr3R 9308165 intron CG8861 - chr3R 9311827 intron CG8861 - chr3R_5_9305001 chr3R_9305001 RAL-303_100b 3841 chr3R 9319552 9319575 chr3R 9320012 9320035 jockey 32 459 30.0 26.0 28.0 1.1 483 chr3R 9319552 intron CG8861 - chr3R 9319794 intron CG8861 - chr3R 9320035 intron CG8861 - chr3R_32_9315001 chr3R_9315001 RAL-303_100b 3842 chr3R 9319577 9319605 chr3R 9320011 9320039 jockey 37 456 15.5 25.5 20.5 1.7 462 chr3R 9319577 intron CG8861 - chr3R 9319808 intron CG8861 - chr3R 9320039 intron CG8861 - chr3R_37_9315001 chr3R_9315001 RAL-303_100b 3843 chr3R 9350482 9350518 chr3R 9350588 9350624 55 105 19.5 13.5 16.5 3.1 142 chr3R 9350482 intron CG45050 + chr3R 9350553 intron CG45050 + chr3R 9350624 intron CG45050 + chr3R_55_9350001 chr3R_9350001 RAL-303_100b 3844 chr3R 9350519 9350530 chr3R 9350585 9350636 13 102 15.0 13.5 14.2 0.9 117 chr3R 9350519 intron CG45050 + chr3R 9350578 intron CG45050 + chr3R 9350636 intron CG45050 + chr3R_13_9350001 chr3R_9350001 RAL-303_100b 3845 chr3R 9361805 9361810 chr3R 9362071 9362076 pogo 4 266 30.0 14.0 22.0 0.2 271 chr3R 9361805 3` UTR CG45050 + chr3R 9361940 3` UTR CG45050 + chr3R 9362076 3` UTR CG45050 + chr3R_4_9360001 chr3R_9360001 RAL-303_100b 3846 chr3R 9361811 9361845 chr3R 9362064 9362111 pogo 31 264 11.5 10.0 10.8 2.6 300 chr3R 9361811 3` UTR CG45050 + chr3R 9361961 3` UTR CG45050 + chr3R 9362111 3` UTR CG45050 + chr3R_31_9360001 chr3R_9360001 RAL-303_100b 3847 chr3R 9379123 9379176 chr3R 9379228 9379283 24 103 0.0 10.5 5.2 3.9 160 chr3R 9379123 intron FER - chr3R 9379203 intron FER - chr3R 9379283 intron FER - chr3R_24_9375001 chr3R_9375001 RAL-303_100b 3848 chr3R 9382790 9382849 chr3R 9382940 9382999 65 146 16.0 10.5 13.2 4.6 209 chr3R 9382790 intron FER - chr3R 9382894 intron FER - chr3R 9382999 intron FER - chr3R_65_9380001 chr3R_9380001 RAL-303_100b 3849 chr3R 9428792 9428795 chr3R 9428895 9428898 5 103 47.0 18.5 32.8 0.1 106 chr3R 9428792 intron ps + chr3R 9428845 intron ps + chr3R 9428898 intron ps + chr3R_5_9425001 chr3R_9425001 RAL-303_100b 3850 chr3R 9428797 9428848 chr3R 9428893 9428951 71 100 23.0 19.5 21.2 3.2 154 chr3R 9428797 intron ps + chr3R 9428874 intron ps + chr3R 9428951 intron ps + chr3R_71_9425001 chr3R_9425001 RAL-303_100b 3851 chr3R 9620956 9620956 chr3R 21907535 21907536 6 12286580 40.5 74.0 57.2 0.1 12286580 chr3R 9620956 intron CG8312 + chr3R 15764246 intergenic not near genes chr3R 21907536 intergenic CG6678 + chr3R_6_15760001 chr3R_15760001 RAL-303_100b 3852 chr3R 9702237 9702251 chr3R 9702338 9702352 12 101 29.0 14.0 21.5 0.5 115 chr3R 9702237 intron Unc-115a - chr3R 9702294 intron Unc-115a - chr3R 9702352 intron Unc-115a - chr3R_12_9700001 chr3R_9700001 RAL-303_100b 3853 chr3R 9702252 9702295 chr3R 9702336 9702357 50 88 14.5 15.0 14.8 3.2 105 chr3R 9702252 intron Unc-115a - chr3R 9702304 intron Unc-115a - chr3R 9702357 intron Unc-115a - chr3R_50_9700001 chr3R_9700001 RAL-303_100b 3854 chr3R 9853152 9853207 chr3R 9853286 9853341 63 129 19.5 13.5 16.5 3.6 189 chr3R 9853152 intron Teh1 - chr3R 9853246 intron Teh1 - chr3R 9853341 intron Teh1 - chr3R_63_9850001 chr3R_9850001 RAL-303_100b 3855 chr3R 9898763 9898819 chr3R 9898879 9898936 58 116 11.5 12.5 12.0 4.5 173 chr3R 9898763 intron Glut4EF + chr3R 9898850 intron Glut4EF + chr3R 9898936 intron Glut4EF + chr3R_58_9895001 chr3R_9895001 RAL-303_100b 3856 chr3R 10231765 10231814 chr3R 10237366 10237416 mdg3 44 5599 13.0 20.5 16.8 2.5 5651 chr3R 10231765 intron CG42795 + chr3R 10234590 intron CG42795 + chr3R 10237416 intron CG42795 + chr3R_44_10230001 chr3R_10230001 RAL-303_100b 3857 chr3R 10255356 10255387 chr3R 10260821 10260852 I-element 26 5463 19.0 23.0 21.0 1.2 5496 chr3R 10255356 3` UTR Sirt6 - chr3R 10258104 intron Sirt6 - chr3R 10260852 exon Sirt6 - chr3R_26_10255001 chr3R_10255001 RAL-303_100b 3858 chr3R 10277107 10277165 chr3R 10277212 10277270 49 102 11.0 10.0 10.5 4.3 163 chr3R 10277107 intron CG43143 + chr3R 10277188 intron CG43143 + chr3R 10277270 intron CG43143 + chr3R_49_10275001 chr3R_10275001 RAL-303_100b 3859 chr3R 10394047 10394100 chr3R 10394165 10394224 58 122 17.5 13.0 15.2 3.6 177 chr3R 10394047 intron cwo + chr3R 10394136 intron cwo + chr3R 10394224 intron cwo + chr3R_58_10390001 chr3R_10390001 RAL-303_100b 3860 chr3R 6090420 6090420 chr3R 10451877 10451877 10 4361457 64.0 80.0 72.0 0.1 4361457 chr3R 6090420 intron Gasp - chr3R 8271148 intergenic not near genes chr3R 10451877 intergenic not near genes chr3R_10_8270001 chr3R_8270001 RAL-303_100b 3861 chr3R 10487618 10487625 chr3R 10487722 10487728 6 104 14.5 33.5 24.0 0.2 110 chr3R 10487618 intergenic not near genes chr3R 10487673 intergenic not near genes chr3R 10487728 intergenic not near genes chr3R_6_10485001 chr3R_10485001 RAL-303_100b 3862 chr3R 10512716 10512725 chr3R 10512835 10512844 11 118 47.5 17.5 32.5 0.3 128 chr3R 10512716 intron hth - chr3R 10512780 intron hth - chr3R 10512844 intron hth - chr3R_11_10510001 chr3R_10510001 RAL-303_100b 3863 chr3R 10512726 10512771 chr3R 10512834 10512864 44 108 14.5 17.0 15.8 2.6 138 chr3R 10512726 intron hth - chr3R 10512795 intron hth - chr3R 10512864 intron hth - chr3R_44_10510001 chr3R_10510001 RAL-303_100b 3864 chr3R 10535309 10535343 chr3R 10535427 10535461 27 117 12.5 14.0 13.2 1.9 152 chr3R 10535309 intron hth - chr3R 10535385 intron hth - chr3R 10535461 intron hth - chr3R_27_10535001 chr3R_10535001 RAL-303_100b 3865 chr3R 10593433 10593462 chr3R 10593515 10593571 27 100 12.0 13.0 12.5 2.0 138 chr3R 10593433 intron hth - chr3R 10593502 intron hth - chr3R 10593571 exon hth - chr3R_27_10590001 chr3R_10590001 RAL-303_100b 3866 chr3R 10627590 10627627 chr3R 10627727 10627760 19 133 13.5 14.5 14.0 1.3 170 chr3R 10627590 intergenic not near genes chr3R 10627675 intergenic not near genes chr3R 10627760 intergenic not near genes chr3R_19_10625001 chr3R_10625001 RAL-303_100b 3867 chr3R 10646078 10646140 chr3R 10646254 10646301 62 174 8.0 14.5 11.2 5.1 223 chr3R 10646078 intergenic CR44018 + chr3R 10646190 intergenic CR44018 + chr3R 10646301 intergenic not near genes chr3R_62_10645001 chr3R_10645001 RAL-303_100b 3868 chr3R 10727618 10727678 chr3R 10727722 10727782 77 101 16.5 13.0 14.8 4.9 164 chr3R 10727618 intergenic not near genes chr3R 10727700 intergenic not near genes chr3R 10727782 intergenic not near genes chr3R_77_10725001 chr3R_10725001 RAL-303_100b 3869 chr3R 10732813 10732875 chr3R 10732923 10732965 61 103 12.0 14.5 13.2 4.3 152 chr3R 10732813 intergenic not near genes chr3R 10732889 intergenic not near genes chr3R 10732965 intergenic not near genes chr3R_61_10730001 chr3R_10730001 RAL-303_100b 3870 chr3R 10785785 10785840 chr3R 10785889 10785944 60 103 15.5 16.5 16.0 3.5 159 chr3R 10785785 intron Rbp1 + chr3R 10785864 intron Rbp1 + chr3R 10785944 intron Rbp1 + chr3R_60_10785001 chr3R_10785001 RAL-303_100b 3871 chr3R 10804150 10804200 chr3R 10811707 10811757 17.6 32 7555 7.0 7.5 7.2 3.9 7607 chr3R 10804150 intergenic CG14692 - chr3R 10807954 intergenic not near genes chr3R 10811757 3` UTR CG14693 - chr3R_32_10805001 chr3R_10805001 RAL-303_100b 3872 chr3R 10868568 10868587 chr3R 10868671 10868690 11 101 29.0 18.5 23.8 0.4 122 chr3R 10868568 5` UTR SelR - chr3R 10868629 5` UTR SelR - chr3R 10868690 intergenic Tsp86D +,SelR - chr3R_11_10865001 chr3R_10865001 RAL-303_100b 3873 chr3R 10868590 10868602 chr3R 10868669 10868705 12 93 25.5 16.0 20.8 0.6 115 chr3R 10868590 5` UTR SelR - chr3R 10868648 intergenic SelR -,Tsp86D + chr3R 10868705 intergenic Tsp86D +,SelR - chr3R_12_10865001 chr3R_10865001 RAL-303_100b 3874 chr3R 10868607 10868621 chr3R 10868668 10868709 8 82 10.5 14.0 12.2 0.6 102 chr3R 10868607 5` UTR SelR - chr3R 10868658 intergenic SelR -,Tsp86D + chr3R 10868709 5` UTR Tsp86D + chr3R_8_10865001 chr3R_10865001 RAL-303_100b 3875 chr3R 10904888 10904937 chr3R 10905112 10905166 42 227 12.0 16.5 14.2 2.8 278 chr3R 10904888 intergenic not near genes chr3R 10905027 intergenic not near genes chr3R 10905166 intergenic not near genes chr3R_42_10905001 chr3R_10905001 RAL-303_100b 3876 chr3R 10906807 10906857 chr3R 10906908 10906958 44 99 11.0 14.5 12.8 3.2 151 chr3R 10906807 intergenic not near genes chr3R 10906882 intergenic not near genes chr3R 10906958 intergenic not near genes chr3R_44_10905001 chr3R_10905001 RAL-303_100b 3877 chr3R 10919659 10919717 chr3R 10919762 10919820 56 102 15.0 12.5 13.8 3.8 161 chr3R 10919659 intergenic not near genes chr3R 10919740 intergenic not near genes chr3R 10919820 intergenic not near genes chr3R_56_10915001 chr3R_10915001 RAL-303_100b 3878 chr3R 10920023 10920077 chr3R 10920126 10920170 41 102 17.5 18.5 18.0 2.2 147 chr3R 10920023 intergenic not near genes chr3R 10920096 intergenic not near genes chr3R 10920170 intergenic not near genes chr3R_41_10920001 chr3R_10920001 RAL-303_100b 3879 chr3R 10957840 10957884 chr3R 10963254 10963298 Rt1c 24 5410 13.5 18.5 16.0 1.4 5458 chr3R 10957840 intergenic not near genes chr3R 10960569 intergenic not near genes chr3R 10963298 intergenic not near genes chr3R_24_10960001 chr3R_10960001 RAL-303_100b 3880 chr3R 11024160 11024208 chr3R 11024273 11024329 59 117 15.0 17.0 16.0 3.5 169 chr3R 11024160 intron CG34114 + chr3R 11024244 intron CG34114 + chr3R 11024329 intron CG34114 + chr3R_59_11020001 chr3R_11020001 RAL-303_100b 3881 chr3R 11065563 11065610 chr3R 11071242 11071245 297 8 5671 8.0 9.5 8.8 0.8 5682 chr3R 11065563 intergenic not near genes chr3R 11068404 intergenic not near genes chr3R 11071245 intergenic not near genes chr3R_8_11065001 chr3R_11065001 RAL-303_100b 3882 chr3R 11099632 11099648 chr3R 11099789 11099805 9 157 33.5 11.0 22.2 0.4 173 chr3R 11099632 intergenic not near genes chr3R 11099718 intergenic not near genes chr3R 11099805 intergenic not near genes chr3R_9_11095001 chr3R_11095001 RAL-303_100b 3883 chr3R 11099649 11099689 chr3R 11099788 11099833 39 155 12.5 10.5 11.5 3.1 184 chr3R 11099649 intergenic not near genes chr3R 11099741 intergenic not near genes chr3R 11099833 intergenic not near genes chr3R_39_11095001 chr3R_11095001 RAL-303_100b 3884 chr3R 11155017 11155071 chr3R 11155120 11155174 43 103 9.5 11.0 10.2 3.8 157 chr3R 11155017 intron Ugt86Dc + chr3R 11155096 intron Ugt86Dc + chr3R 11155174 intron Ugt86Dc + chr3R_43_11155001 chr3R_11155001 RAL-303_100b 3885 chr3R 11172785 11172821 chr3R 11172901 11172937 26 115 25.5 22.0 23.8 1.0 152 chr3R 11172785 intergenic Ugt35a - chr3R 11172861 intergenic Ugt35a - chr3R 11172937 intergenic Ugt35a - chr3R_26_11170001 chr3R_11170001 RAL-303_100b 3886 chr3R 11174568 11174581 chr3R 11175307 11175319 16 739 101.0 76.0 88.5 0.2 751 chr3R 11174568 exon Ugt86Dj - chr3R 11174944 intron Ugt86Dj - chr3R 11175319 exon Ugt86Dj - chr3R_16_11170001 chr3R_11170001 RAL-303_100b 3887 chr3R 11174582 11174615 chr3R 11175306 11175337 19 730 91.0 76.5 83.8 0.2 755 chr3R 11174582 exon Ugt86Dj - chr3R 11174960 intron Ugt86Dj - chr3R 11175337 exon Ugt86Dj - chr3R_19_11170001 chr3R_11170001 RAL-303_100b 3888 chr3R 11197957 11198018 chr3R 11198081 11198142 46 119 11.5 13.5 12.5 3.4 185 chr3R 11197957 intron cu + chr3R 11198050 intron cu + chr3R 11198142 intron cu + chr3R_46_11195001 chr3R_11195001 RAL-303_100b 3889 chr3R 11265906 11265923 chr3R 11266015 11266021 19 107 28.5 37.5 33.0 0.6 115 chr3R 11265906 intergenic not near genes chr3R 11265964 intergenic not near genes chr3R 11266021 intergenic not near genes chr3R_19_11265001 chr3R_11265001 RAL-303_100b 3890 chr3R 11284925 11284930 chr3R 11285024 11285024 4 100 39.5 10.5 25.0 0.2 99 chr3R 11284925 intron CR31386 - chr3R 11284974 intron CR31386 - chr3R 11285024 intron CR31386 - chr3R_4_11280001 chr3R_11280001 RAL-303_100b 3891 chr3R 11284931 11284974 chr3R 11285023 11285077 39 101 9.5 10.0 9.8 3.6 146 chr3R 11284931 intron CR31386 - chr3R 11285004 intron CR31386 - chr3R 11285077 intron CR31386 - chr3R_39_11285001 chr3R_11285001 RAL-303_100b 3892 chr3R 11358324 11358344 chr3R 11358434 11358454 18 109 16.0 13.5 14.8 1.1 130 chr3R 11358324 intron pros + chr3R 11358389 intron pros + chr3R 11358454 intron pros + chr3R_18_11355001 chr3R_11355001 RAL-303_100b 3893 chr3R 11379212 11379254 chr3R 11388392 11388433 roo 51 9179 19.5 16.0 17.8 2.7 9221 chr3R 11379212 intron pros + chr3R 11383822 intron pros + chr3R 11388433 intron pros + chr3R_51_11380001 chr3R_11380001 RAL-303_100b 3894 chr3R 11444045 11444077 chr3R 11444168 11444188 15 121 42.0 43.5 42.8 0.3 143 chr3R 11444045 intron,intron sals -,CG17230 + chr3R 11444116 intron,intron sals -,CG17230 + chr3R 11444188 intron,intron sals -,CG17230 + chr3R_15_11440001 chr3R_11440001 RAL-303_100b 3895 chr3R 11513822 11513880 chr3R 11513930 11513973 30 104 32.5 46.5 39.5 0.7 151 chr3R 11513822 intergenic not near genes chr3R 11513898 intergenic not near genes chr3R 11513973 intergenic not near genes chr3R_30_11510001 chr3R_11510001 RAL-303_100b 3896 chr3R 11518792 11518810 chr3R 11518908 11518926 18 116 33.5 20.0 26.8 0.6 134 chr3R 11518792 intergenic not near genes chr3R 11518859 intergenic not near genes chr3R 11518926 intergenic not near genes chr3R_18_11515001 chr3R_11515001 RAL-303_100b 3897 chr3R 11518811 11518845 chr3R 11518904 11518958 28 113 16.5 18.5 17.5 1.5 147 chr3R 11518811 intergenic not near genes chr3R 11518884 intergenic not near genes chr3R 11518958 intergenic not near genes chr3R_28_11515001 chr3R_11515001 RAL-303_100b 3898 chr3R 11528362 11528415 chr3R 11528564 11528617 28 198 46.0 54.5 50.2 0.5 255 chr3R 11528362 intergenic not near genes chr3R 11528490 intergenic not near genes chr3R 11528617 intergenic not near genes chr3R_28_11525001 chr3R_11525001 RAL-303_100b 3899 chr3R 11545854 11545905 chr3R 11545996 11546037 19 140 33.0 36.5 34.8 0.5 183 chr3R 11545854 intergenic not near genes chr3R 11545946 intergenic not near genes chr3R 11546037 intergenic not near genes chr3R_19_11545001 chr3R_11545001 RAL-303_100b 3900 chr3R 11566620 11566670 chr3R 11567030 11567080 23 416 99.0 101.0 100.0 0.2 460 chr3R 11566620 intron,intron fabp -,sea - chr3R 11566850 intron,intron fabp -,sea - chr3R 11567080 intergenic fabp -,sea - chr3R_23_11565001 chr3R_11565001 RAL-303_100b 3901 chr3R 11656475 11656531 chr3R 11656580 11656636 38 104 45.5 51.0 48.2 0.8 161 chr3R 11656475 5` UTR CG42327 + chr3R 11656556 5` UTR CG42327 + chr3R 11656636 5` UTR CG42327 + chr3R_38_11655001 chr3R_11655001 RAL-303_100b 3902 chr3R 11670967 11670973 chr3R 11671067 11671076 6 102 33.0 13.5 23.2 0.2 109 chr3R 11670967 exon CG42327 + chr3R 11671022 intron CG42327 + chr3R 11671076 intron CG42327 + chr3R_6_11670001 chr3R_11670001 RAL-303_100b 3903 chr3R 11670975 11671018 chr3R 11671064 11671121 32 100 16.0 13.0 14.5 2.1 146 chr3R 11670975 exon CG42327 + chr3R 11671048 intron CG42327 + chr3R 11671121 intron CG42327 + chr3R_32_11670001 chr3R_11670001 RAL-303_100b 3904 chr3R 11689700 11689752 chr3R 11689807 11689859 26 104 43.0 41.5 42.2 0.6 159 chr3R 11689700 intron CG6908 - chr3R 11689780 exon CG6908 - chr3R 11689859 exon CG6908 - chr3R_26_11685001 chr3R_11685001 RAL-303_100b 3905 chr3R 11689826 11689880 chr3R 11690792 11690846 31 957 39.0 45.5 42.2 0.7 1020 chr3R 11689826 exon CG6908 - chr3R 11690336 intergenic CG18765 -,CG6908 - chr3R 11690846 exon CG18765 - chr3R_31_11690001 chr3R_11690001 RAL-303_100b 3906 chr3R 11694702 11694752 chr3R 11694820 11694855 43 117 12.0 12.5 12.2 3.3 153 chr3R 11694702 intergenic Fer3 - chr3R 11694778 intergenic Fer3 - chr3R 11694855 intergenic not near genes chr3R_43_11690001 chr3R_11690001 RAL-303_100b 3907 chr3R 11708612 11708663 chr3R 11708845 11708896 29 231 49.5 22.0 35.8 0.8 284 chr3R 11708612 intergenic not near genes chr3R 11708754 intergenic not near genes chr3R 11708896 intergenic not near genes chr3R_29_11705001 chr3R_11705001 RAL-303_100b 3908 chr3R 11710185 11710235 chr3R 11710288 11710338 20 100 53.0 43.5 48.2 0.4 153 chr3R 11710185 intergenic not near genes chr3R 11710262 intergenic not near genes chr3R 11710338 intergenic not near genes chr3R_20_11710001 chr3R_11710001 RAL-303_100b 3909 chr3R 11733720 11733768 chr3R 11733857 11733905 31 128 45.0 50.0 47.5 0.6 185 chr3R 11733720 intergenic not near genes chr3R 11733812 intergenic not near genes chr3R 11733905 intergenic not near genes chr3R_31_11730001 chr3R_11730001 RAL-303_100b 3910 chr3R 11757718 11757740 chr3R 11757844 11757866 5 126 55.5 42.5 49.0 0.1 148 chr3R 11757718 intron Lk6 - chr3R 11757792 intron Lk6 - chr3R 11757866 intron Lk6 - chr3R_5_11755001 chr3R_11755001 RAL-303_100b 3911 chr3R 11757742 11757766 chr3R 11757843 11757862 9 114 48.5 42.0 45.2 0.2 120 chr3R 11757742 intron Lk6 - chr3R 11757802 intron Lk6 - chr3R 11757862 intron Lk6 - chr3R_9_11755001 chr3R_11755001 RAL-303_100b 3912 chr3R 11811068 11811121 chr3R 11811189 11811235 36 117 57.0 62.5 59.8 0.6 167 chr3R 11811068 5` UTR ClC-a - chr3R 11811152 intron ClC-a - chr3R 11811235 intron ClC-a - chr3R_36_11810001 chr3R_11810001 RAL-303_100b 3913 chr3R 11830326 11830360 chr3R 11830435 11830468 11 108 36.5 34.5 35.5 0.3 142 chr3R 11830326 intron CG6959 - chr3R 11830397 intron CG6959 - chr3R 11830468 intron CG6959 - chr3R_11_11830001 chr3R_11830001 RAL-303_100b 3914 chr3R 11841041 11841048 chr3R 11846257 11846264 BS 11 5215 48.5 18.5 33.5 0.3 5223 chr3R 11841041 intron CG6959 - chr3R 11843652 intron CG6959 - chr3R 11846264 intron CG6959 - chr3R_11_11840001 chr3R_11840001 RAL-303_100b 3915 chr3R 11841049 11841091 chr3R 11846253 11846307 BS 49 5214 17.0 16.5 16.8 2.8 5258 chr3R 11841049 intron CG6959 - chr3R 11843678 intron CG6959 - chr3R 11846307 intron CG6959 - chr3R_49_11840001 chr3R_11840001 RAL-303_100b 3916 chr3R 11853409 11853472 chr3R 11853583 11853643 41 170 40.0 49.0 44.5 0.9 234 chr3R 11853409 intron CG6959 - chr3R 11853526 intron CG6959 - chr3R 11853643 intron CG6959 - chr3R_41_11850001 chr3R_11850001 RAL-303_100b 3917 chr3R 11865823 11865878 chr3R 11865943 11865998 26 119 41.5 41.0 41.2 0.6 175 chr3R 11865823 intron CG6959 - chr3R 11865910 intron CG6959 - chr3R 11865998 intron CG6959 - chr3R_26_11865001 chr3R_11865001 RAL-303_100b 3918 chr3R 11914350 11914402 chr3R 11914460 11914512 25 108 37.0 42.5 39.8 0.6 162 chr3R 11914350 intron Cad87A - chr3R 11914431 intron Cad87A - chr3R 11914512 intron Cad87A - chr3R_25_11910001 chr3R_11910001 RAL-303_100b 3919 chr3R 11916407 11916410 chr3R 11916511 11916514 5 104 36.5 18.0 27.2 0.2 107 chr3R 11916407 intron Cad87A - chr3R 11916460 intron Cad87A - chr3R 11916514 intron Cad87A - chr3R_5_11915001 chr3R_11915001 RAL-303_100b 3920 chr3R 11916418 11916454 chr3R 11916503 11916558 40 98 16.0 18.0 17.0 2.2 140 chr3R 11916418 intron Cad87A - chr3R 11916488 intron Cad87A - chr3R 11916558 intron Cad87A - chr3R_40_11915001 chr3R_11915001 RAL-303_100b 3921 chr3R 11919296 11919307 chr3R 11919392 11919418 4 108 49.0 42.5 45.8 0.1 122 chr3R 11919296 intron Cad87A - chr3R 11919357 intron Cad87A - chr3R 11919418 intron Cad87A - chr3R_4_11915001 chr3R_11915001 RAL-303_100b 3922 chr3R 11919314 11919334 chr3R 11919391 11919432 5 83 43.5 42.0 42.8 0.1 118 chr3R 11919314 intron Cad87A - chr3R 11919373 intron Cad87A - chr3R 11919432 intron Cad87A - chr3R_5_11915001 chr3R_11915001 RAL-303_100b 3923 chr3R 11928470 11928523 chr3R 11928608 11928661 40 135 42.0 43.5 42.8 0.9 191 chr3R 11928470 intron Cad87A - chr3R 11928566 intron Cad87A - chr3R 11928661 intron Cad87A - chr3R_40_11925001 chr3R_11925001 RAL-303_100b 3924 chr3R 11930208 11930222 chr3R 11930317 11930325 9 105 62.5 49.0 55.8 0.2 117 chr3R 11930208 intron Cad87A - chr3R 11930266 intron Cad87A - chr3R 11930325 intron Cad87A - chr3R_9_11930001 chr3R_11930001 RAL-303_100b 3925 chr3R 11930223 11930266 chr3R 11930316 11930375 41 102 56.0 48.5 52.2 0.8 152 chr3R 11930223 intron Cad87A - chr3R 11930299 intron Cad87A - chr3R 11930375 intron Cad87A - chr3R_41_11930001 chr3R_11930001 RAL-303_100b 3926 chr3R 11943172 11943193 chr3R 11943549 11943568 4 373 52.0 21.0 36.5 0.1 396 chr3R 11943172 intron Cad87A - chr3R 11943370 intron Cad87A - chr3R 11943568 intron Cad87A - chr3R_4_11940001 chr3R_11940001 RAL-303_100b 3927 chr3R 11943207 11943211 chr3R 11943548 11943558 6 354 45.0 20.5 32.8 0.2 351 chr3R 11943207 intron Cad87A - chr3R 11943382 intron Cad87A - chr3R 11943558 intron Cad87A - chr3R_6_11940001 chr3R_11940001 RAL-303_100b 3928 chr3R 11943215 11943221 chr3R 11943546 11943597 6 359 40.0 21.0 30.5 0.2 382 chr3R 11943215 intron Cad87A - chr3R 11943406 intron Cad87A - chr3R 11943597 intron Cad87A - chr3R_6_11940001 chr3R_11940001 RAL-303_100b 3929 chr3R 11945359 11945404 chr3R 11945482 11945527 42 120 13.0 13.0 13.0 3.0 168 chr3R 11945359 intron Cad87A - chr3R 11945443 intron Cad87A - chr3R 11945527 intron Cad87A - chr3R_42_11945001 chr3R_11945001 RAL-303_100b 3930 chr3R 11990645 11990657 chr3R 11990743 11990770 4 109 18.0 13.5 15.8 0.2 125 chr3R 11990645 intron mfas - chr3R 11990708 intron mfas - chr3R 11990770 intron mfas - chr3R_4_11990001 chr3R_11990001 RAL-303_100b 3931 chr3R 11998943 11998956 chr3R 11999083 11999096 5 138 29.5 44.5 37.0 0.1 153 chr3R 11998943 intron Tk - chr3R 11999020 intron Tk - chr3R 11999096 intron Tk - chr3R_5_11995001 chr3R_11995001 RAL-303_100b 3932 chr3R 12022860 12022916 chr3R 12025062 12025118 pogo 44 2200 13.0 19.5 16.2 2.6 2258 chr3R 12022860 intergenic not near genes chr3R 12023989 intergenic not near genes chr3R 12025118 intergenic not near genes chr3R_44_12020001 chr3R_12020001 RAL-303_100b 3933 chr3R 12029907 12029935 chr3R 12030019 12030047 15 112 38.5 35.5 37.0 0.4 140 chr3R 12029907 3` UTR,5` UTR,5` UTR CG31358 -,CG42504 -,CG42505 - chr3R 12029977 3` UTR,5` UTR,5` UTR CG31358 -,CG42504 -,CG42505 - chr3R 12030047 exon,5` UTR,5` UTR CG31358 -,CG42504 -,CG42505 - chr3R_15_12025001 chr3R_12025001 RAL-303_100b 3934 chr3R 12029940 12029952 chr3R 12030015 12030039 6 98 37.0 35.0 36.0 0.2 99 chr3R 12029940 3` UTR,5` UTR,5` UTR CG31358 -,CG42504 -,CG42505 - chr3R 12029990 3` UTR,5` UTR,5` UTR CG31358 -,CG42504 -,CG42505 - chr3R 12030039 exon,5` UTR,5` UTR CG31358 -,CG42504 -,CG42505 - chr3R_6_12025001 chr3R_12025001 RAL-303_100b 3935 chr3R 12045149 12045201 chr3R 12045250 12045298 18 99 40.5 37.0 38.8 0.5 149 chr3R 12045149 intergenic not near genes chr3R 12045224 intergenic not near genes chr3R 12045298 intergenic not near genes chr3R_18_12045001 chr3R_12045001 RAL-303_100b 3936 chr3R 12080843 12080897 chr3R 12080945 12080998 31 101 44.5 48.0 46.2 0.7 155 chr3R 12080843 intron CG14741 - chr3R 12080920 intron CG14741 - chr3R 12080998 intron CG14741 - chr3R_31_12080001 chr3R_12080001 RAL-303_100b 3937 chr3R 12081979 12081992 chr3R 12082080 12082093 15 100 59.0 39.0 49.0 0.3 114 chr3R 12081979 intron CG14741 - chr3R 12082036 intron CG14741 - chr3R 12082093 intron CG14741 - chr3R_15_12080001 chr3R_12080001 RAL-303_100b 3938 chr3R 12081995 12082030 chr3R 12082076 12082118 18 97 49.5 37.5 43.5 0.4 123 chr3R 12081995 intron CG14741 - chr3R 12082056 intron CG14741 - chr3R 12082118 intron CG14741 - chr3R_18_12080001 chr3R_12080001 RAL-303_100b 3939 chr3R 12102852 12102883 chr3R 12102972 12103003 12 119 34.5 34.0 34.2 0.3 151 chr3R 12102852 intron dpr17 + chr3R 12102928 intron dpr17 + chr3R 12103003 intron dpr17 + chr3R_12_12100001 chr3R_12100001 RAL-303_100b 3940 chr3R 12111858 12111924 chr3R 12111968 12112025 53 98 5.5 7.0 6.2 7.4 167 chr3R 12111858 intergenic dpr17 + chr3R 12111942 intergenic not near genes chr3R 12112025 intergenic not near genes chr3R_53_12110001 chr3R_12110001 RAL-303_100b 3941 chr3R 12112313 12112367 chr3R 12112433 12112456 21 109 16.5 17.0 16.8 1.2 143 chr3R 12112313 intergenic not near genes chr3R 12112384 intergenic not near genes chr3R 12112456 intergenic not near genes chr3R_21_12110001 chr3R_12110001 RAL-303_100b 3942 chr3R 12117497 12117499 chr3R 12117911 12117913 4 414 44.0 20.0 32.0 0.1 416 chr3R 12117497 intergenic not near genes chr3R 12117705 intergenic not near genes chr3R 12117913 intergenic not near genes chr3R_4_12115001 chr3R_12115001 RAL-303_100b 3943 chr3R 12117505 12117542 chr3R 12117908 12117956 16 409 35.0 18.5 26.8 0.6 451 chr3R 12117505 intergenic not near genes chr3R 12117730 intergenic not near genes chr3R 12117956 intergenic not near genes chr3R_16_12115001 chr3R_12115001 RAL-303_100b 3944 chr3R 12119854 12119907 chr3R 12119972 12120013 17 113 54.0 49.0 51.5 0.3 159 chr3R 12119854 intergenic not near genes chr3R 12119934 intergenic not near genes chr3R 12120013 intergenic not near genes chr3R_17_12115001 chr3R_12115001 RAL-303_100b 3945 chr3R 12154033 12154046 chr3R 12154444 12154492 20 417 79.0 67.5 73.2 0.3 459 chr3R 12154033 intron dpr15 - chr3R 12154262 intron dpr15 - chr3R 12154492 intron dpr15 - chr3R_20_12150001 chr3R_12150001 RAL-303_100b 3946 chr3R 12169209 12169221 chr3R 12169312 12169323 14 103 35.0 19.0 27.0 0.5 114 chr3R 12169209 intergenic not near genes chr3R 12169266 intergenic not near genes chr3R 12169323 intergenic not near genes chr3R_14_12165001 chr3R_12165001 RAL-303_100b 3947 chr3R 12174987 12175040 chr3R 12175377 12175429 28 388 29.0 30.0 29.5 0.9 442 chr3R 12174987 intergenic not near genes chr3R 12175208 intergenic not near genes chr3R 12175429 intergenic not near genes chr3R_28_12175001 chr3R_12175001 RAL-303_100b 3948 chr3R 12175209 12175262 chr3R 12175308 12175360 21 105 7.5 7.0 7.2 2.6 151 chr3R 12175209 intergenic not near genes chr3R 12175284 intergenic not near genes chr3R 12175360 intergenic not near genes chr3R_21_12175001 chr3R_12175001 RAL-303_100b 3949 chr3R 12183151 12183206 chr3R 12183262 12183316 54 109 13.0 7.5 10.2 4.8 165 chr3R 12183151 intergenic not near genes chr3R 12183234 intergenic not near genes chr3R 12183316 intergenic not near genes chr3R_54_12180001 chr3R_12180001 RAL-303_100b 3950 chr3R 12247123 12247146 chr3R 12247233 12247254 10 107 53.0 49.0 51.0 0.2 131 chr3R 12247123 intergenic not near genes chr3R 12247188 intergenic not near genes chr3R 12247254 intergenic not near genes chr3R_10_12245001 chr3R_12245001 RAL-303_100b 3951 chr3R 12247148 12247169 chr3R 12247228 12247279 12 107 47.5 47.5 47.5 0.2 131 chr3R 12247148 intergenic not near genes chr3R 12247214 intergenic not near genes chr3R 12247279 intergenic not near genes chr3R_12_12245001 chr3R_12245001 RAL-303_100b 3952 chr3R 12267836 12267889 chr3R 12267941 12267992 45 105 12.5 15.0 13.8 3.0 156 chr3R 12267836 intron svp + chr3R 12267914 intron svp + chr3R 12267992 intron svp + chr3R_45_12265001 chr3R_12265001 RAL-303_100b 3953 chr3R 12274648 12274703 chr3R 12274797 12274840 18 149 47.5 46.5 47.0 0.4 192 chr3R 12274648 intron svp + chr3R 12274744 intron svp + chr3R 12274840 intron svp + chr3R_18_12270001 chr3R_12270001 RAL-303_100b 3954 chr3R 12284119 12284123 chr3R 15478521 15478537 12 3194410 75.0 61.0 68.0 0.2 3194418 chr3R 12284119 intron svp + chr3R 13881328 intergenic not near genes chr3R 15478537 intergenic not near genes chr3R_12_13880001 chr3R_13880001 RAL-303_100b 3955 chr3R 12297629 12297635 chr3R 12297731 12297733 4 101 48.5 53.5 51.0 0.1 104 chr3R 12297629 intron svp + chr3R 12297681 intron svp + chr3R 12297733 intron svp + chr3R_4_12295001 chr3R_12295001 RAL-303_100b 3956 chr3R 12344104 12344158 chr3R 12344206 12344259 87 100 10.5 9.0 9.8 8.1 155 chr3R 12344104 intergenic not near genes chr3R 12344182 intergenic not near genes chr3R 12344259 intergenic not near genes chr3R_87_12340001 chr3R_12340001 RAL-303_100b 3957 chr3R 12392865 12392900 chr3R 12392990 12393022 31 121 18.0 35.5 26.8 1.1 157 chr3R 12392865 intron,5` UTR,3` UTR CG34402 +,CG10096 -,CG10097 - chr3R 12392944 intron,5` UTR,3` UTR CG34402 +,CG10096 -,CG10097 - chr3R 12393022 intron,5` UTR,3` UTR CG34402 +,CG10096 -,CG10097 - chr3R_31_12390001 chr3R_12390001 RAL-303_100b 3958 chr3R 12396848 12396888 chr3R 12403789 12403838 6 6956 6.5 149.0 77.8 0.1 6990 chr3R 12396848 intron CG34402 + chr3R 12400343 intron,exon CG34402 +,lig3 - chr3R 12403838 exon Cyp9f2 - chr3R_6_12400001 chr3R_12400001 RAL-303_100b 3959 chr3R 12404970 12405015 chr3R 12405217 12405262 29 245 34.0 37.0 35.5 0.8 292 chr3R 12404970 intron Cyp9f2 - chr3R 12405116 intron Cyp9f2 - chr3R 12405262 intron Cyp9f2 - chr3R_29_12405001 chr3R_12405001 RAL-303_100b 3960 chr3R 12524118 12524142 chr3R 12524214 12524247 18 103 22.5 22.5 22.5 0.8 129 chr3R 12524118 intron Octbeta3R - chr3R 12524182 intron Octbeta3R - chr3R 12524247 intron Octbeta3R - chr3R_18_12520001 chr3R_12520001 RAL-303_100b 3961 chr3R 12524144 12524165 chr3R 12524212 12524270 12 94 13.5 23.0 18.2 0.6 126 chr3R 12524144 intron Octbeta3R - chr3R 12524207 intron Octbeta3R - chr3R 12524270 intron Octbeta3R - chr3R_12_12520001 chr3R_12520001 RAL-303_100b 3962 chr3R 12568468 12568527 chr3R 12568573 12568632 57 102 47.0 46.5 46.8 1.2 164 chr3R 12568468 intron Octbeta2R - chr3R 12568550 intron Octbeta2R - chr3R 12568632 intron Octbeta2R - chr3R_57_12565001 chr3R_12565001 RAL-303_100b 3963 chr3R 12566712 12566725 chr3R 12570787 12570794 5 4071 108.5 46.0 77.2 0.1 4082 chr3R 12566712 intron Octbeta2R - chr3R 12568753 intron Octbeta2R - chr3R 12570794 intron Octbeta2R - chr3R_5_12565001 chr3R_12565001 RAL-303_100b 3964 chr3R 12566708 12566767 chr3R 12570797 12570836 40 4075 120.5 54.5 87.5 0.5 4128 chr3R 12566708 intron Octbeta2R - chr3R 12568772 intron Octbeta2R - chr3R 12570836 intron Octbeta2R - chr3R_40_12565001 chr3R_12565001 RAL-303_100b 3965 chr3R 12717367 12717419 chr3R 12717742 12717785 36 373 60.5 32.5 46.5 0.8 418 chr3R 12717367 intron Men - chr3R 12717576 intron Men - chr3R 12717785 intron Men - chr3R_36_12715001 chr3R_12715001 RAL-303_100b 3966 chr3R 12733455 12733508 chr3R 12733557 12733590 23 97 47.5 53.5 50.5 0.4 135 chr3R 12733455 intergenic not near genes chr3R 12733522 intergenic not near genes chr3R 12733590 intergenic not near genes chr3R_23_12730001 chr3R_12730001 RAL-303_100b 3967 chr3R 12735155 12735183 chr3R 12735430 12735458 13 273 40.0 33.5 36.8 0.3 303 chr3R 12735155 intergenic not near genes chr3R 12735306 intergenic not near genes chr3R 12735458 intergenic not near genes chr3R_13_12735001 chr3R_12735001 RAL-303_100b 3968 chr3R 12739012 12739069 chr3R 12739113 12739170 29 101 45.5 46.0 45.8 0.6 158 chr3R 12739012 intergenic not near genes chr3R 12739091 intergenic not near genes chr3R 12739170 intergenic CG5724 + chr3R_29_12735001 chr3R_12735001 RAL-303_100b 3969 chr3R 12763086 12763154 chr3R 12763199 12763256 26 101 1.0 7.0 4.0 5.2 170 chr3R 12763086 intron beat-Vc - chr3R 12763171 intron beat-Vc - chr3R 12763256 intron beat-Vc - chr3R_26_12760001 chr3R_12760001 RAL-303_100b 3970 chr3R 12780278 12780302 chr3R 12780415 12780439 BS 21 137 18.5 1.0 9.8 1.9 161 chr3R 12780278 intron beat-Vc - chr3R 12780358 intron beat-Vc - chr3R 12780439 intron beat-Vc - chr3R_21_12780001 chr3R_12780001 RAL-303_100b 3971 chr3R 12782291 12782350 chr3R 12782657 12782716 20 365 31.0 29.5 30.2 0.6 425 chr3R 12782291 intron beat-Vc - chr3R 12782504 intron beat-Vc - chr3R 12782716 intron beat-Vc - chr3R_20_12780001 chr3R_12780001 RAL-303_100b 3972 chr3R 12786430 12786487 chr3R 12786815 12786870 16 383 45.5 44.5 45.0 0.3 440 chr3R 12786430 intergenic not near genes chr3R 12786650 intergenic not near genes chr3R 12786870 intergenic not near genes chr3R_16_12785001 chr3R_12785001 RAL-303_100b 3973 chr3R 12787914 12787956 chr3R 12788022 12788064 22 107 35.0 36.0 35.5 0.6 150 chr3R 12787914 intergenic not near genes chr3R 12787989 intergenic not near genes chr3R 12788064 intergenic not near genes chr3R_22_12785001 chr3R_12785001 RAL-303_100b 3974 chr3R 12814215 12814266 chr3R 12814317 12814368 29 100 41.5 45.0 43.2 0.7 153 chr3R 12814215 intron CG31345 - chr3R 12814292 intron CG31345 - chr3R 12814368 intron CG31345 - chr3R_29_12810001 chr3R_12810001 RAL-303_100b 3975 chr3R 12819001 12819042 chr3R 12819109 12819150 13 107 38.5 33.0 35.8 0.4 149 chr3R 12819001 intergenic not near genes chr3R 12819076 intergenic not near genes chr3R 12819150 intergenic not near genes chr3R_13_12815001 chr3R_12815001 RAL-303_100b 3976 chr3R 12864563 12864591 chr3R 12865073 12865093 roo 6 508 3.0 11.0 7.0 0.8 530 chr3R 12864563 intergenic not near genes chr3R 12864828 intergenic not near genes chr3R 12865093 intergenic not near genes chr3R_6_12860001 chr3R_12860001 RAL-303_100b 3977 chr3R 12866465 12866519 chr3R 12866641 12866695 25 176 31.5 39.5 35.5 0.7 230 chr3R 12866465 intergenic not near genes chr3R 12866580 intergenic not near genes chr3R 12866695 intergenic not near genes chr3R_25_12865001 chr3R_12865001 RAL-303_100b 3978 chr3R 12920131 12920143 chr3R 12925359 12925371 copia 8 5226 34.5 28.0 31.2 0.2 5240 chr3R 12920131 intron beat-Vb + chr3R 12922751 intron beat-Vb + chr3R 12925371 intron beat-Vb + chr3R_8_12920001 chr3R_12920001 RAL-303_100b 3979 chr3R 12920144 12920184 chr3R 12925357 12925410 copia 34 5224 7.5 25.5 16.5 1.9 5266 chr3R 12920144 intron beat-Vb + chr3R 12922777 intron beat-Vb + chr3R 12925410 intron beat-Vb + chr3R_34_12920001 chr3R_12920001 RAL-303_100b 3980 chr3R 12954777 12954835 chr3R 12954907 12954939 36 126 33.0 33.0 33.0 1.1 162 chr3R 12954777 intron grsm - chr3R 12954858 intron grsm - chr3R 12954939 intron grsm - chr3R_36_12950001 chr3R_12950001 RAL-303_100b 3981 chr3R 12972531 12972584 chr3R 12972695 12972748 47 163 32.5 35.0 33.8 1.4 217 chr3R 12972531 intron CG7381 - chr3R 12972640 intron CG7381 - chr3R 12972748 intron CG7381 - chr3R_47_12970001 chr3R_12970001 RAL-303_100b 3982 chr3R 13026992 13027037 chr3R 13027098 13027143 30 105 51.0 61.5 56.2 0.5 151 chr3R 13026992 3` UTR CG12360 - chr3R 13027068 3` UTR CG12360 - chr3R 13027143 3` UTR CG12360 - chr3R_30_13025001 chr3R_13025001 RAL-303_100b 3983 chr3R 13059939 13059977 chr3R 13060159 13060197 33 218 11.5 12.0 11.8 2.6 258 chr3R 13059939 intron sim + chr3R 13060068 intron sim + chr3R 13060197 intron sim + chr3R_33_13060001 chr3R_13060001 RAL-303_100b 3984 chr3R 13061857 13061912 chr3R 13061977 13062032 24 119 18.0 12.5 15.2 1.5 175 chr3R 13061857 intron sim + chr3R 13061944 intron sim + chr3R 13062032 intron sim + chr3R_24_13060001 chr3R_13060001 RAL-303_100b 3985 chr3R 13066979 13067180 chr3R 13067091 13067316 34 121 30.0 9.0 19.5 1.7 337 chr3R 13066979 intron sim + chr3R 13067148 intron sim + chr3R 13067316 intron sim + chr3R_34_13065001 chr3R_13065001 RAL-303_100b 3986 chr3R 13073951 13074005 chr3R 13074055 13074109 20 101 24.5 31.5 28.0 0.7 158 chr3R 13073951 intron sim + chr3R 13074030 intron sim + chr3R 13074109 exon sim + chr3R_20_13070001 chr3R_13070001 RAL-303_100b 3987 chr3R 13075335 13075339 chr3R 13075441 13075445 5 106 30.5 12.5 21.5 0.2 110 chr3R 13075335 intron sim + chr3R 13075390 intron sim + chr3R 13075445 intron sim + chr3R_5_13075001 chr3R_13075001 RAL-303_100b 3988 chr3R 13075341 13075371 chr3R 13075439 13075477 17 103 17.0 11.0 14.0 1.1 136 chr3R 13075341 intron sim + chr3R 13075409 intron sim + chr3R 13075477 intron sim + chr3R_17_13075001 chr3R_13075001 RAL-303_100b 3989 chr3R 13120746 13120801 chr3R 13120848 13120903 49 101 19.5 14.5 17.0 2.7 157 chr3R 13120746 intron timeout + chr3R 13120824 intron timeout + chr3R 13120903 intron timeout + chr3R_49_13120001 chr3R_13120001 RAL-303_100b 3990 chr3R 13135803 13135858 chr3R 13138002 13138058 pogo 52 2199 14.0 13.5 13.8 3.5 2255 chr3R 13135803 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13136930 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13138058 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_52_13135001 chr3R_13135001 RAL-303_100b 3991 chr3R 13143016 13143054 chr3R 13148617 13148635 mdg3 38 5595 23.5 17.0 20.2 1.8 5619 chr3R 13143016 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13145826 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13148635 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_38_13145001 chr3R_13145001 RAL-303_100b 3992 chr3R 13143055 13143066 chr3R 13148616 13148667 mdg3 19 5593 18.5 16.0 17.2 1.0 5612 chr3R 13143055 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13145861 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13148667 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_19_13145001 chr3R_13145001 RAL-303_100b 3993 chr3R 13205383 13205439 chr3R 13205489 13205522 29 101 49.0 44.5 46.8 0.6 139 chr3R 13205383 intergenic not near genes chr3R 13205452 intergenic not near genes chr3R 13205522 intergenic not near genes chr3R_29_13205001 chr3R_13205001 RAL-303_100b 3994 chr3R 13206625 13206678 chr3R 13206887 13206918 31 258 43.0 37.5 40.2 0.8 293 chr3R 13206625 intergenic not near genes chr3R 13206772 intergenic not near genes chr3R 13206918 intergenic not near genes chr3R_31_13205001 chr3R_13205001 RAL-303_100b 3995 chr3R 13274187 13274245 chr3R 13274291 13274349 22 100 36.5 41.5 39.0 0.6 162 chr3R 13274187 intergenic not near genes chr3R 13274268 intergenic not near genes chr3R 13274349 intergenic not near genes chr3R_22_13270001 chr3R_13270001 RAL-303_100b 3996 chr3R 13294946 13294972 chr3R 13295044 13295081 6 108 58.0 49.5 53.8 0.1 135 chr3R 13294946 exon CG8773 + chr3R 13295014 exon CG8773 + chr3R 13295081 exon CG8773 + chr3R_6_13295001 chr3R_13295001 RAL-303_100b 3997 chr3R 13313404 13313455 chr3R 13313528 13313570 31 116 46.0 41.5 43.8 0.7 166 chr3R 13313404 intergenic CG44142 - chr3R 13313487 intergenic CG44142 - chr3R 13313570 intergenic CG44142 - chr3R_31_13310001 chr3R_13310001 RAL-303_100b 3998 chr3R 13314073 13314124 chr3R 13318887 13318937 Doc 20 4812 12.0 11.0 11.5 1.6 4864 chr3R 13314073 intergenic not near genes chr3R 13316505 intergenic not near genes chr3R 13318937 intergenic CG45080 - chr3R_20_13315001 chr3R_13315001 RAL-303_100b 3999 chr3R 10748667 10748687 chr3R 13345426 13345426 4 2596744 36.5 64.0 50.2 0.1 2596759 chr3R 10748667 intron TkR86C - chr3R 12047046 intergenic not near genes chr3R 13345426 intergenic PK2-R1 + chr3R_4_12045001 chr3R_12045001 RAL-303_100b 4000 chr3R 13348985 13349032 chr3R 13349083 13349133 19 96 44.0 44.5 44.2 0.4 148 chr3R 13348985 intergenic not near genes chr3R 13349059 intergenic not near genes chr3R 13349133 intergenic not near genes chr3R_19_13345001 chr3R_13345001 RAL-303_100b 4001 chr3R 13364609 13364638 chr3R 13364718 13364747 18 109 32.5 23.0 27.8 0.6 138 chr3R 13364609 intron poly - chr3R 13364678 intron poly - chr3R 13364747 intron poly - chr3R_18_13360001 chr3R_13360001 RAL-303_100b 4002 chr3R 13391243 13391261 chr3R 13391355 13391368 13 111 28.5 51.5 40.0 0.3 125 chr3R 13391243 intron CCHa2 - chr3R 13391306 intron CCHa2 - chr3R 13391368 intron CCHa2 - chr3R_13_13390001 chr3R_13390001 RAL-303_100b 4003 chr3R 13391262 13391303 chr3R 13391354 13391415 20 107 35.5 50.5 43.0 0.5 153 chr3R 13391262 intron CCHa2 - chr3R 13391338 intron CCHa2 - chr3R 13391415 intron CCHa2 - chr3R_20_13390001 chr3R_13390001 RAL-303_100b 4004 chr3R 13418642 13418683 chr3R 13418743 13418784 30 100 52.0 49.5 50.8 0.6 142 chr3R 13418642 intergenic not near genes chr3R 13418713 intergenic not near genes chr3R 13418784 intergenic not near genes chr3R_30_13415001 chr3R_13415001 RAL-303_100b 4005 chr3R 13435370 13435421 chr3R 13435568 13435621 25 198 12.0 44.5 28.2 0.9 251 chr3R 13435370 intergenic yrt - chr3R 13435496 intergenic not near genes chr3R 13435621 intergenic not near genes chr3R_25_13435001 chr3R_13435001 RAL-303_100b 4006 chr3R 13487507 13487555 chr3R 19199405 19199408 4 5711887 17.5 69.5 43.5 0.1 5711901 chr3R 13487507 intergenic not near genes chr3R 16343458 exon pad + chr3R 19199408 intron CG31475 + chr3R_4_16340001 chr3R_16340001 RAL-303_100b 4007 chr3R 13496606 13496661 chr3R 13496710 13496765 17 101 53.0 43.5 48.2 0.3 159 chr3R 13496606 intergenic not near genes chr3R 13496686 intergenic not near genes chr3R 13496765 intergenic not near genes chr3R_17_13495001 chr3R_13495001 RAL-303_100b 4008 chr3R 13505451 13505501 chr3R 13505764 13505814 7 313 11.0 37.5 24.2 0.3 363 chr3R 13505451 intergenic not near genes chr3R 13505632 intergenic not near genes chr3R 13505814 intergenic not near genes chr3R_7_13505001 chr3R_13505001 RAL-303_100b 4009 chr3R 13505838 13505867 chr3R 13505929 13505958 12 95 25.0 13.5 19.2 0.6 120 chr3R 13505838 intergenic not near genes chr3R 13505898 intergenic not near genes chr3R 13505958 intergenic not near genes chr3R_12_13505001 chr3R_13505001 RAL-303_100b 4010 chr3R 13517200 13517256 chr3R 13520042 13520098 jockey 11 2842 6.5 0.0 3.2 2.6 2898 chr3R 13517200 intergenic not near genes chr3R 13518649 intergenic not near genes chr3R 13520098 intergenic not near genes chr3R_11_13515001 chr3R_13515001 RAL-303_100b 4011 chr3R 13540467 13540522 chr3R 13540568 13540606 26 95 33.0 39.0 36.0 0.7 139 chr3R 13540467 intergenic not near genes chr3R 13540536 intergenic not near genes chr3R 13540606 intergenic not near genes chr3R_26_13540001 chr3R_13540001 RAL-303_100b 4012 chr3R 13563338 13563359 chr3R 13563429 13563461 9 95 37.5 28.5 33.0 0.3 123 chr3R 13563338 intergenic not near genes chr3R 13563400 intergenic not near genes chr3R 13563461 intergenic not near genes chr3R_9_13560001 chr3R_13560001 RAL-303_100b 4013 chr3R 13571340 13571387 chr3R 13571455 13571513 10 118 34.5 42.5 38.5 0.3 173 chr3R 13571340 intergenic not near genes chr3R 13571426 intergenic not near genes chr3R 13571513 intergenic not near genes chr3R_10_13570001 chr3R_13570001 RAL-303_100b 4014 chr3R 13580819 13580829 chr3R 13580921 13580931 4 102 51.0 59.5 55.2 0.1 112 chr3R 13580819 intergenic not near genes chr3R 13580875 intergenic not near genes chr3R 13580931 intergenic not near genes chr3R_4_13580001 chr3R_13580001 RAL-303_100b 4015 chr3R 13599193 13599241 chr3R 13599329 13599377 16 136 26.0 39.0 32.5 0.5 184 chr3R 13599193 intergenic not near genes chr3R 13599285 intergenic not near genes chr3R 13599377 intergenic not near genes chr3R_16_13595001 chr3R_13595001 RAL-303_100b 4016 chr3R 13600749 13600806 chr3R 13600875 13600930 24 122 31.0 33.0 32.0 0.7 181 chr3R 13600749 intergenic not near genes chr3R 13600840 intergenic not near genes chr3R 13600930 intergenic not near genes chr3R_24_13600001 chr3R_13600001 RAL-303_100b 4017 chr3R 13602164 13602188 chr3R 13602266 13602285 10 101 47.0 46.5 46.8 0.2 121 chr3R 13602164 intergenic not near genes chr3R 13602224 intergenic not near genes chr3R 13602285 intergenic not near genes chr3R_10_13600001 chr3R_13600001 RAL-303_100b 4018 chr3R 13603030 13603325 chr3R 13603146 13603442 50 115 45.5 16.0 30.8 1.6 412 chr3R 13603030 intergenic not near genes chr3R 13603236 intergenic not near genes chr3R 13603442 intergenic not near genes chr3R_50_13600001 chr3R_13600001 RAL-303_100b 4019 chr3R 13603332 13603373 chr3R 13603434 13603490 19 114 34.5 35.5 35.0 0.5 158 chr3R 13603332 intergenic not near genes chr3R 13603411 intergenic not near genes chr3R 13603490 intergenic not near genes chr3R_19_13600001 chr3R_13600001 RAL-303_100b 4020 chr3R 13604033 13604092 chr3R 13604293 13604352 25 259 29.5 39.0 34.2 0.7 319 chr3R 13604033 intergenic not near genes chr3R 13604192 intergenic not near genes chr3R 13604352 intergenic not near genes chr3R_25_13600001 chr3R_13600001 RAL-303_100b 4021 chr3R 13606684 13606731 chr3R 13606856 13606903 24 169 31.5 29.5 30.5 0.8 219 chr3R 13606684 intergenic CG9759 - chr3R 13606794 intergenic CG9759 - chr3R 13606903 intergenic CG9759 - chr3R_24_13605001 chr3R_13605001 RAL-303_100b 4022 chr3R 13607149 13607196 chr3R 13607279 13607323 16 129 40.5 29.5 35.0 0.4 174 chr3R 13607149 3` UTR CG9759 - chr3R 13607236 3` UTR CG9759 - chr3R 13607323 3` UTR CG9759 - chr3R_16_13605001 chr3R_13605001 RAL-303_100b 4023 chr3R 13616124 13616132 chr3R 13616227 13616239 4 105 36.5 30.5 33.5 0.1 115 chr3R 13616124 exon CG9269 + chr3R 13616182 exon CG9269 + chr3R 13616239 exon CG9269 + chr3R_4_13615001 chr3R_13615001 RAL-303_100b 4024 chr3R 13625666 13625716 chr3R 13625772 13625822 13 104 32.5 34.5 33.5 0.4 156 chr3R 13625666 intergenic not near genes chr3R 13625744 intergenic not near genes chr3R 13625822 intergenic not near genes chr3R_13_13625001 chr3R_13625001 RAL-303_100b 4025 chr3R 13630715 13630765 chr3R 13630886 13630938 16 173 31.0 39.5 35.2 0.4 223 chr3R 13630715 intergenic CR45594 - chr3R 13630826 intergenic CR45594 - chr3R 13630938 3` UTR CR45594 - chr3R_16_13630001 chr3R_13630001 RAL-303_100b 4026 chr3R 13669066 13669123 chr3R 13669187 13669244 28 119 52.5 47.5 50.0 0.5 178 chr3R 13669066 intron Task6 - chr3R 13669155 intron Task6 - chr3R 13669244 intron Task6 - chr3R_28_13665001 chr3R_13665001 RAL-303_100b 4027 chr3R 13693028 13693028 chr3R 21907534 21907536 18 8214507 75.0 74.0 74.5 0.2 8214508 chr3R 13693028 3` UTR flfl + chr3R 17800282 exon CG17803 - chr3R 21907536 intergenic CG6678 + chr3R_18_17800001 chr3R_17800001 RAL-303_100b 4028 chr3R 13728546 13728560 chr3R 13728648 13728653 7 101 7.5 0.0 3.8 1.5 107 chr3R 13728546 intron CG34383 + chr3R 13728600 intron CG34383 + chr3R 13728653 intron CG34383 + chr3R_7_13725001 chr3R_13725001 RAL-303_100b 4029 chr3R 11988077 11988085 chr3R 13731612 13731615 6 1743531 54.0 82.0 68.0 0.1 1743538 chr3R 11988077 intron mfas - chr3R 12859846 intergenic not near genes chr3R 13731615 intron CG34383 + chr3R_6_12855001 chr3R_12855001 RAL-303_100b 4030 chr3R 13743254 13743284 chr3R 13743349 13743377 9 98 28.0 28.5 28.2 0.3 123 chr3R 13743254 intron CG34383 + chr3R 13743316 intron CG34383 + chr3R 13743377 intron CG34383 + chr3R_9_13740001 chr3R_13740001 RAL-303_100b 4031 chr3R 13745405 13745442 chr3R 13745548 13745585 8 143 17.5 7.0 12.2 0.6 180 chr3R 13745405 intron CG34383 + chr3R 13745495 intron CG34383 + chr3R 13745585 intron CG34383 + chr3R_8_13745001 chr3R_13745001 RAL-303_100b 4032 chr3R 13782036 13782039 chr3R 13782137 13782144 4 104 49.5 46.5 48.0 0.1 108 chr3R 13782036 exon CG9286 + chr3R 13782090 intergenic CG9286 +,Dip-B + chr3R 13782144 intergenic CG9286 +,Dip-B + chr3R_4_13780001 chr3R_13780001 RAL-303_100b 4033 chr3R 13782043 13782089 chr3R 13782133 13782173 25 102 41.0 46.0 43.5 0.6 130 chr3R 13782043 exon CG9286 + chr3R 13782108 intergenic CG9286 +,Dip-B + chr3R 13782173 intergenic CG9286 +,Dip-B + chr3R_25_13780001 chr3R_13780001 RAL-303_100b 4034 chr3R 13808674 13808714 chr3R 13809162 13809213 12 483 45.0 47.0 46.0 0.3 539 chr3R 13808674 intergenic not near genes chr3R 13808944 intergenic not near genes chr3R 13809213 intergenic not near genes chr3R_12_13805001 chr3R_13805001 RAL-303_100b 4035 chr3R 13830727 13830784 chr3R 13830916 13830973 24 188 41.0 37.0 39.0 0.6 246 chr3R 13830727 intergenic not near genes chr3R 13830850 intergenic not near genes chr3R 13830973 intergenic not near genes chr3R_24_13830001 chr3R_13830001 RAL-303_100b 4036 chr3R 13863654 13863716 chr3R 13863767 13863809 53 110 10.0 11.0 10.5 4.6 155 chr3R 13863654 intergenic not near genes chr3R 13863732 intergenic not near genes chr3R 13863809 intergenic not near genes chr3R_53_13860001 chr3R_13860001 RAL-303_100b 4037 chr3R 13880532 13880538 chr3R 13880678 13880679 5 145 54.0 42.0 48.0 0.1 147 chr3R 13880532 intergenic not near genes chr3R 13880606 intergenic not near genes chr3R 13880679 intergenic not near genes chr3R_5_13880001 chr3R_13880001 RAL-303_100b 4038 chr3R 13880543 13880578 chr3R 13880672 13880724 16 141 42.5 41.0 41.8 0.4 181 chr3R 13880543 intergenic not near genes chr3R 13880634 intergenic not near genes chr3R 13880724 intergenic not near genes chr3R_16_13880001 chr3R_13880001 RAL-303_100b 4039 chr3R 13890826 13890850 chr3R 13891114 13891131 8 283 26.5 39.0 32.8 0.2 305 chr3R 13890826 intergenic not near genes chr3R 13890978 intergenic not near genes chr3R 13891131 intergenic not near genes chr3R_8_13890001 chr3R_13890001 RAL-303_100b 4040 chr3R 13909895 13909906 chr3R 13909998 13910010 4 103 37.5 42.0 39.8 0.1 115 chr3R 13909895 intergenic not near genes chr3R 13909952 intergenic not near genes chr3R 13910010 intergenic not near genes chr3R_4_13905001 chr3R_13905001 RAL-303_100b 4041 chr3R 13948203 13948244 chr3R 13948321 13948359 16 115 32.0 31.0 31.5 0.5 156 chr3R 13948203 intergenic CG31517 + chr3R 13948281 intergenic CG31517 + chr3R 13948359 intergenic CG31517 + chr3R_16_13945001 chr3R_13945001 RAL-303_100b 4042 chr3R 13975349 13975409 chr3R 13975454 13975511 75 104 13.5 18.0 15.8 4.5 162 chr3R 13975349 intron rdx - chr3R 13975430 intron rdx - chr3R 13975511 intron rdx - chr3R_75_13975001 chr3R_13975001 RAL-303_100b 4043 chr3R 14014257 14014299 chr3R 14014414 14014421 9 153 17.0 0.0 8.5 0.9 164 chr3R 14014257 intron rdx - chr3R 14014339 intron rdx - chr3R 14014421 intron rdx - chr3R_9_14010001 chr3R_14010001 RAL-303_100b 4044 chr3R 14021624 14021629 chr3R 14023466 14023471 S-element 6 1842 42.0 16.5 29.2 0.2 1847 chr3R 14021624 intron rdx - chr3R 14022548 intron rdx - chr3R 14023471 intron rdx - chr3R_6_14020001 chr3R_14020001 RAL-303_100b 4045 chr3R 14021630 14021680 chr3R 14023464 14023522 S-element 47 1837 16.5 16.0 16.2 2.7 1892 chr3R 14021630 intron rdx - chr3R 14022576 intron rdx - chr3R 14023522 intron rdx - chr3R_47_14020001 chr3R_14020001 RAL-303_100b 4046 chr3R 14037558 14037586 chr3R 14037664 14037689 38 104 19.5 18.0 18.8 1.9 131 chr3R 14037558 intergenic not near genes chr3R 14037624 intergenic not near genes chr3R 14037689 intergenic not near genes chr3R_38_14035001 chr3R_14035001 RAL-303_100b 4047 chr3R 14047747 14047805 chr3R 14047863 14047914 29 115 0.5 14.5 7.5 3.4 167 chr3R 14047747 intergenic not near genes chr3R 14047830 intergenic not near genes chr3R 14047914 intergenic not near genes chr3R_29_14045001 chr3R_14045001 RAL-303_100b 4048 chr3R 14062818 14062877 chr3R 14062920 14062939 45 97 17.0 16.0 16.5 2.6 121 chr3R 14062818 intron foxo + chr3R 14062878 intron foxo + chr3R 14062939 intron foxo + chr3R_45_14060001 chr3R_14060001 RAL-303_100b 4049 chr3R 14067118 14067155 chr3R 14067222 14067259 31 103 14.0 5.5 9.8 2.9 141 chr3R 14067118 exon foxo + chr3R 14067188 intron foxo + chr3R 14067259 intron foxo + chr3R_31_14065001 chr3R_14065001 RAL-303_100b 4050 chr3R 14083393 14083426 chr3R 14083519 14083543 30 124 15.0 0.0 7.5 3.5 150 chr3R 14083393 intron foxo + chr3R 14083468 intron foxo + chr3R 14083543 intron foxo + chr3R_30_14080001 chr3R_14080001 RAL-303_100b 4051 chr3R 14117420 14117467 chr3R 14117516 14117568 39 99 21.5 13.0 17.2 2.1 148 chr3R 14117420 intron Kif19A - chr3R 14117494 intron Kif19A - chr3R 14117568 intron Kif19A - chr3R_39_14115001 chr3R_14115001 RAL-303_100b 4052 chr3R 14132425 14132450 chr3R 14132563 14132588 8 138 0.0 14.5 7.2 1.0 163 chr3R 14132425 intergenic CG14356 - chr3R 14132506 intergenic CG14356 - chr3R 14132588 intergenic not near genes chr3R_8_14130001 chr3R_14130001 RAL-303_100b 4053 chr3R 14136194 14136196 chr3R 14136307 14136309 4 113 0.0 0.0 0.0 4.0 115 chr3R 14136194 intergenic not near genes chr3R 14136252 intergenic not near genes chr3R 14136309 intergenic not near genes chr3R_4_14135001 chr3R_14135001 RAL-303_100b 4054 chr3R 14180785 14180844 chr3R 14185575 14185634 F-element 22 4788 8.5 4.0 6.2 3.1 4849 chr3R 14180785 intron Dop1R1 - chr3R 14183210 intron Dop1R1 - chr3R 14185634 intron Dop1R1 - chr3R_22_14180001 chr3R_14180001 RAL-303_100b 4055 chr3R 14246367 14246374 chr3R 14247888 14247895 jockey 4 1521 30.0 18.0 24.0 0.2 1528 chr3R 14246367 intergenic not near genes chr3R 14247131 intergenic not near genes chr3R 14247895 intergenic not near genes chr3R_4_14245001 chr3R_14245001 RAL-303_100b 4056 chr3R 14246377 14246418 chr3R 14247884 14247901 jockey 30 1513 9.5 17.5 13.5 2.1 1524 chr3R 14246377 intergenic not near genes chr3R 14247139 intergenic not near genes chr3R 14247901 intergenic not near genes chr3R_30_14245001 chr3R_14245001 RAL-303_100b 4057 chr3R 14253680 14253721 chr3R 14253784 14253825 52 103 9.0 12.0 10.5 4.5 145 chr3R 14253680 intron Aats-met - chr3R 14253752 intron Aats-met - chr3R 14253825 intron Aats-met - chr3R_52_14250001 chr3R_14250001 RAL-303_100b 4058 chr3R 14256754 14256768 chr3R 14256865 14256879 11 111 15.0 24.0 19.5 0.5 125 chr3R 14256754 intron,3` UTR Aats-met -,CG43179 + chr3R 14256816 intron,3` UTR Aats-met -,CG43179 + chr3R 14256879 intron,3` UTR Aats-met -,CG43179 + chr3R_11_14255001 chr3R_14255001 RAL-303_100b 4059 chr3R 14339591 14339649 chr3R 14339762 14339815 48 169 12.0 16.0 14.0 3.2 224 chr3R 14339591 intron NK7.1 - chr3R 14339703 intron NK7.1 - chr3R 14339815 intron NK7.1 - chr3R_48_14335001 chr3R_14335001 RAL-303_100b 4060 chr3R 14364034 14364091 chr3R 14364135 14364192 52 97 13.0 20.0 16.5 3.0 158 chr3R 14364034 intron NK7.1 - chr3R 14364113 intron NK7.1 - chr3R 14364192 intron NK7.1 - chr3R_52_14360001 chr3R_14360001 RAL-303_100b 4061 chr3R 14401021 14401083 chr3R 14401130 14401192 47 108 9.0 12.5 10.8 4.0 171 chr3R 14401021 intron cv-c - chr3R 14401106 intron cv-c - chr3R 14401192 intron cv-c - chr3R_47_14400001 chr3R_14400001 RAL-303_100b 4062 chr3R 14408511 14408525 chr3R 14408625 14408639 10 113 19.0 6.5 12.8 0.7 128 chr3R 14408511 intron cv-c - chr3R 14408575 intron cv-c - chr3R 14408639 intron cv-c - chr3R_10_14405001 chr3R_14405001 RAL-303_100b 4063 chr3R 14440697 14440755 chr3R 14440798 14440856 58 100 12.5 14.0 13.2 4.1 159 chr3R 14440697 intron cv-c - chr3R 14440776 intron cv-c - chr3R 14440856 intron cv-c - chr3R_58_14440001 chr3R_14440001 RAL-303_100b 4064 chr3R 14520412 14520434 chr3R 14520537 14520559 17 123 34.5 19.0 26.8 0.6 147 chr3R 14520412 intron Pde6 - chr3R 14520486 intron Pde6 - chr3R 14520559 intron Pde6 - chr3R_17_14520001 chr3R_14520001 RAL-303_100b 4065 chr3R 14520435 14520470 chr3R 14520535 14520595 43 119 13.0 18.0 15.5 2.6 160 chr3R 14520435 intron Pde6 - chr3R 14520515 intron Pde6 - chr3R 14520595 intron Pde6 - chr3R_43_14520001 chr3R_14520001 RAL-303_100b 4066 chr3R 14549010 14549049 chr3R 14549122 14549124 33 108 17.5 13.5 15.5 2.0 114 chr3R 14549010 intron Pde6 - chr3R 14549067 intron Pde6 - chr3R 14549124 intron Pde6 - chr3R_33_14545001 chr3R_14545001 RAL-303_100b 4067 chr3R 14556569 14556597 chr3R 14556677 14556699 20 107 15.0 11.5 13.2 1.4 130 chr3R 14556569 intron Pde6 - chr3R 14556634 intron Pde6 - chr3R 14556699 intron Pde6 - chr3R_20_14555001 chr3R_14555001 RAL-303_100b 4068 chr3R 14560638 14560651 chr3R 14560858 14560871 16 220 0.0 15.0 7.5 1.9 233 chr3R 14560638 intergenic CG14850 + chr3R 14560754 intergenic CG14850 + chr3R 14560871 intergenic CG14850 + chr3R_16_14560001 chr3R_14560001 RAL-303_100b 4069 chr3R 14560653 14560692 chr3R 14560855 14560912 37 219 0.0 12.0 6.0 5.3 259 chr3R 14560653 intergenic CG14850 + chr3R 14560782 intergenic CG14850 + chr3R 14560912 intergenic CG14850 + chr3R_37_14560001 chr3R_14560001 RAL-303_100b 4070 chr3R 14589028 14589072 chr3R 14589154 14589198 41 125 18.0 14.0 16.0 2.4 170 chr3R 14589028 intron stumps + chr3R 14589113 intron stumps + chr3R 14589198 intron stumps + chr3R_41_14585001 chr3R_14585001 RAL-303_100b 4071 chr3R 14608444 14608474 chr3R 14608561 14608591 28 116 14.5 25.5 20.0 1.3 147 chr3R 14608444 intergenic stumps + chr3R 14608518 intergenic stumps + chr3R 14608591 intergenic not near genes chr3R_28_14605001 chr3R_14605001 RAL-303_100b 4072 chr3R 14617002 14617060 chr3R 14617103 14617161 57 99 14.5 13.0 13.8 3.9 159 chr3R 14617002 exon CG14853 + chr3R 14617082 intron CG14853 + chr3R 14617161 intron CG14853 + chr3R_57_14615001 chr3R_14615001 RAL-303_100b 4073 chr3R 14662289 14662340 chr3R 14662395 14662446 50 105 16.5 15.0 15.8 3.0 157 chr3R 14662289 exon Rad17 - chr3R 14662368 intron Rad17 - chr3R 14662446 exon Rad17 - chr3R_50_14660001 chr3R_14660001 RAL-303_100b 4074 chr3R 14682884 14682893 chr3R 14682999 14683008 12 115 11.0 21.0 16.0 0.7 124 chr3R 14682884 intron Meltrin - chr3R 14682946 intron Meltrin - chr3R 14683008 intron Meltrin - chr3R_12_14680001 chr3R_14680001 RAL-303_100b 4075 chr3R 14764545 14764590 chr3R 14764668 14764708 22 119 11.0 11.5 11.2 1.8 163 chr3R 14764545 intron jvl + chr3R 14764626 intron jvl + chr3R 14764708 intron jvl + chr3R_22_14760001 chr3R_14760001 RAL-303_100b 4076 chr3R 14923687 14923742 chr3R 14923788 14923844 43 100 12.5 22.0 17.2 2.4 157 chr3R 14923687 3` UTR CR45598 - chr3R 14923766 intergenic CR45598 - chr3R 14923844 intergenic CR45598 - chr3R_43_14920001 chr3R_14920001 RAL-303_100b 4077 chr3R 14944874 14944896 chr3R 14944980 14944996 16 104 28.0 17.5 22.8 0.7 122 chr3R 14944874 intergenic not near genes chr3R 14944935 intergenic not near genes chr3R 14944996 intergenic not near genes chr3R_16_14940001 chr3R_14940001 RAL-303_100b 4078 chr3R 14946022 14946033 chr3R 14946192 14946203 5 170 23.5 10.0 16.8 0.3 181 chr3R 14946022 intergenic not near genes chr3R 14946112 intergenic not near genes chr3R 14946203 intergenic not near genes chr3R_5_14945001 chr3R_14945001 RAL-303_100b 4079 chr3R 14946034 14946071 chr3R 14946186 14946241 33 169 14.0 8.5 11.2 2.7 207 chr3R 14946034 intergenic not near genes chr3R 14946138 intergenic not near genes chr3R 14946241 intergenic not near genes chr3R_33_14945001 chr3R_14945001 RAL-303_100b 4080 chr3R 14995673 14995728 chr3R 14995783 14995838 26 107 8.0 14.5 11.2 2.1 165 chr3R 14995673 intergenic not near genes chr3R 14995756 intergenic not near genes chr3R 14995838 intergenic not near genes chr3R_26_14995001 chr3R_14995001 RAL-303_100b 4081 chr3R 15026305 15026345 chr3R 15026416 15026456 36 109 13.0 15.5 14.2 2.4 151 chr3R 15026305 intergenic not near genes chr3R 15026380 intergenic not near genes chr3R 15026456 intergenic not near genes chr3R_36_15025001 chr3R_15025001 RAL-303_100b 4082 chr3R 15032454 15032461 chr3R 15032566 15032573 6 112 0.0 12.5 6.2 0.8 119 chr3R 15032454 intergenic not near genes chr3R 15032514 intergenic not near genes chr3R 15032573 intergenic not near genes chr3R_6_15030001 chr3R_15030001 RAL-303_100b 4083 chr3R 15041399 15041417 chr3R 15045201 15045226 Doc 15 3806 0.0 17.0 8.5 1.6 3827 chr3R 15041399 intergenic not near genes chr3R 15043312 intergenic not near genes chr3R 15045226 intergenic not near genes chr3R_15_15040001 chr3R_15040001 RAL-303_100b 4084 chr3R 15059253 15059481 chr3R 15059471 15059593 BS 36 176 0.0 0.0 0.0 36.0 340 chr3R 15059253 intron dpr9 - chr3R 15059423 intron dpr9 - chr3R 15059593 intron dpr9 - chr3R_36_15055001 chr3R_15055001 RAL-303_100b 4085 chr3R 15078327 15078339 chr3R 15078432 15078444 9 105 18.0 23.5 20.8 0.4 117 chr3R 15078327 intergenic CG6974 - chr3R 15078386 intergenic CG6974 - chr3R 15078444 intergenic CG6974 - chr3R_9_15075001 chr3R_15075001 RAL-303_100b 4086 chr3R 15078340 15078374 chr3R 15078425 15078479 34 102 5.5 20.0 12.8 2.5 139 chr3R 15078340 intergenic CG6974 - chr3R 15078410 intergenic CG6974 - chr3R 15078479 intergenic CG6974 - chr3R_34_15075001 chr3R_15075001 RAL-303_100b 4087 chr3R 15079781 15079836 chr3R 15080047 15080092 pogo 42 264 20.5 8.5 14.5 2.7 311 chr3R 15079781 3` UTR CG6966 - chr3R 15079936 3` UTR CG6966 - chr3R 15080092 3` UTR CG6966 - chr3R_42_15075001 chr3R_15075001 RAL-303_100b 4088 chr3R 15088073 15088105 chr3R 15088170 15088228 17 121 13.5 0.5 7.0 2.1 155 chr3R 15088073 intron CG6966 - chr3R 15088150 intron CG6966 - chr3R 15088228 intron CG6966 - chr3R_17_15085001 chr3R_15085001 RAL-303_100b 4089 chr3R 15102475 15102519 chr3R 15109755 15109799 412 23 7277 13.5 15.5 14.5 1.5 7324 chr3R 15102475 intron CG42788 - chr3R 15106137 intron CG42788 - chr3R 15109799 intron CG42788 - chr3R_23_15105001 chr3R_15105001 RAL-303_100b 4090 chr3R 15102520 15102528 chr3R 15109754 15109799 412 11 7275 9.5 15.5 12.5 0.8 7279 chr3R 15102520 intron CG42788 - chr3R 15106160 intron CG42788 - chr3R 15109799 intron CG42788 - chr3R_11_15105001 chr3R_15105001 RAL-303_100b 4091 chr3R 15132050 15132082 chr3R 15135115 15135166 Juan 29 3083 21.0 16.5 18.8 1.5 3116 chr3R 15132050 intergenic CG42788 - chr3R 15133608 intergenic not near genes chr3R 15135166 3` UTR CG6912 - chr3R_29_15130001 chr3R_15130001 RAL-303_100b 4092 chr3R 15162525 15162577 chr3R 15167317 15167369 F-element 55 4791 20.5 19.5 20.0 2.6 4844 chr3R 15162525 intron Gyc88E + chr3R 15164947 intron Gyc88E + chr3R 15167369 intron Gyc88E + chr3R_55_15160001 chr3R_15160001 RAL-303_100b 4093 chr3R 15286987 15286988 chr3R 21907534 21907535 4 6620548 59.0 74.0 66.5 0.1 6620548 chr3R 15286987 intron Tm1 + chr3R 18597261 intron,exon qin +,CG14304 - chr3R 21907535 intergenic CG6678 + chr3R_4_18595001 chr3R_18595001 RAL-303_100b 4094 chr3R 15302207 15302251 chr3R 15302313 15302328 19 107 18.0 13.0 15.5 1.2 121 chr3R 15302207 intron Tm1 + chr3R 15302268 intron Tm1 + chr3R 15302328 intron Tm1 + chr3R_19_15300001 chr3R_15300001 RAL-303_100b 4095 chr3R 15406120 15406171 chr3R 15406226 15406277 41 105 12.0 4.5 8.2 4.5 157 chr3R 15406120 intron CG6125 - chr3R 15406198 intron CG6125 - chr3R 15406277 intron CG6125 - chr3R_41_15405001 chr3R_15405001 RAL-303_100b 4096 chr3R 12284121 12284123 chr3R 15478439 15478455 7 3194325 75.0 76.0 75.5 0.1 3194334 chr3R 12284121 intron svp + chr3R 13881288 intergenic not near genes chr3R 15478455 intergenic not near genes chr3R_7_13880001 chr3R_13880001 RAL-303_100b 4097 chr3R 15520412 15520445 chr3R 15520519 15520535 10 108 74.0 62.5 68.2 0.1 123 chr3R 15520412 intergenic not near genes chr3R 15520474 intergenic not near genes chr3R 15520535 intergenic not near genes chr3R_10_15520001 chr3R_15520001 RAL-303_100b 4098 chr3R 15594656 15594661 chr3R 15594764 15594769 6 108 0.0 27.0 13.5 0.4 113 chr3R 15594656 intergenic not near genes chr3R 15594712 intergenic not near genes chr3R 15594769 intergenic not near genes chr3R_6_15590001 chr3R_15590001 RAL-303_100b 4099 chr3R 15594662 15594675 chr3R 15594759 15594783 14 106 0.0 24.5 12.2 1.1 121 chr3R 15594662 intergenic not near genes chr3R 15594722 intergenic not near genes chr3R 15594783 intergenic not near genes chr3R_14_15590001 chr3R_15590001 RAL-303_100b 4100 chr3R 15601145 15601178 chr3R 15608692 15608725 412 38 7546 39.5 21.5 30.5 1.2 7580 chr3R 15601145 intergenic not near genes chr3R 15604935 intergenic not near genes chr3R 15608725 intergenic not near genes chr3R_38_15600001 chr3R_15600001 RAL-303_100b 4101 chr3R 15601179 15601196 chr3R 15608691 15608733 412 27 7542 28.5 20.5 24.5 1.1 7554 chr3R 15601179 intergenic not near genes chr3R 15604956 intergenic not near genes chr3R 15608733 intergenic not near genes chr3R_27_15600001 chr3R_15600001 RAL-303_100b 4102 chr3R 15611901 15611952 chr3R 15612013 15612064 34 111 0.0 14.5 7.2 4.1 163 chr3R 15611901 intergenic not near genes chr3R 15611982 intergenic not near genes chr3R 15612064 intergenic not near genes chr3R_34_15610001 chr3R_15610001 RAL-303_100b 4103 chr3R 15618735 15618748 chr3R 15626227 15626247 blood 14 7498 6.5 26.5 16.5 0.8 7512 chr3R 15618735 intergenic not near genes chr3R 15622491 intergenic not near genes chr3R 15626247 intergenic not near genes chr3R_14_15620001 chr3R_15620001 RAL-303_100b 4104 chr3R 15618750 15618764 chr3R 15626223 15626263 blood 18 7497 4.5 24.5 14.5 1.2 7513 chr3R 15618750 intergenic not near genes chr3R 15622506 intergenic not near genes chr3R 15626263 intergenic not near genes chr3R_18_15620001 chr3R_15620001 RAL-303_100b 4105 chr3R 15635184 15635240 chr3R 15635330 15635372 35 140 0.0 16.5 8.2 3.8 188 chr3R 15635184 intergenic CG43335 + chr3R 15635278 intergenic CG43335 + chr3R 15635372 intergenic CG43335 + chr3R_35_15635001 chr3R_15635001 RAL-303_100b 4106 chr3R 15646765 15646798 chr3R 15646873 15646906 27 107 18.0 10.0 14.0 1.8 141 chr3R 15646765 intergenic not near genes chr3R 15646836 intergenic not near genes chr3R 15646906 intergenic not near genes chr3R_27_15645001 chr3R_15645001 RAL-303_100b 4107 chr3R 15691156 15691329 chr3R 15691286 15691441 73 116 0.0 0.5 0.2 60.8 285 chr3R 15691156 intergenic not near genes chr3R 15691298 intergenic not near genes chr3R 15691441 intergenic not near genes chr3R_73_15690001 chr3R_15690001 RAL-303_100b 4108 chr3R 15702868 15702892 chr3R 15703083 15703100 17 214 1.0 24.5 12.8 1.2 232 chr3R 15702868 intergenic not near genes chr3R 15702984 intergenic not near genes chr3R 15703100 intergenic not near genes chr3R_17_15700001 chr3R_15700001 RAL-303_100b 4109 chr3R 15735217 15735237 chr3R 15739962 15739982 F-element 11 4744 11.5 14.5 13.0 0.8 4765 chr3R 15735217 intergenic not near genes chr3R 15737600 intergenic not near genes chr3R 15739982 intergenic not near genes chr3R_11_15735001 chr3R_15735001 RAL-303_100b 4110 chr3R 15786216 15786247 chr3R 15786549 15786551 25 329 20.0 0.0 10.0 2.3 335 chr3R 15786216 intergenic CG9590 + chr3R 15786384 intergenic CG9590 + chr3R 15786551 intergenic CG9590 + chr3R_25_15785001 chr3R_15785001 RAL-303_100b 4111 chr3R 15790110 15790264 chr3R 15790242 15790407 35 136 53.0 58.0 55.5 0.6 297 chr3R 15790110 exon c(3)G - chr3R 15790258 exon c(3)G - chr3R 15790407 exon c(3)G - chr3R_35_15790001 chr3R_15790001 RAL-303_100b 4112 chr3R 15790275 15790281 chr3R 15790571 15790577 4 296 52.0 69.0 60.5 0.1 302 chr3R 15790275 exon c(3)G - chr3R 15790426 exon c(3)G - chr3R 15790577 exon c(3)G - chr3R_4_15790001 chr3R_15790001 RAL-303_100b 4113 chr3R 15790282 15790287 chr3R 15790405 15790583 5 261 52.5 55.5 54.0 0.1 301 chr3R 15790282 exon c(3)G - chr3R 15790432 exon c(3)G - chr3R 15790583 exon c(3)G - chr3R_5_15790001 chr3R_15790001 RAL-303_100b 4114 chr3R 15790291 15790406 chr3R 15790399 15790571 15 221 55.0 54.5 54.8 0.3 280 chr3R 15790291 exon c(3)G - chr3R 15790431 exon c(3)G - chr3R 15790571 exon c(3)G - chr3R_15_15790001 chr3R_15790001 RAL-303_100b 4115 chr3R 15790813 15790871 chr3R 15790954 15790999 31 139 82.0 81.0 81.5 0.4 186 chr3R 15790813 exon c(3)G - chr3R 15790906 intron c(3)G - chr3R 15790999 exon c(3)G - chr3R_31_15790001 chr3R_15790001 RAL-303_100b 4116 chr3R 15868915 15868943 chr3R 15869020 15869039 25 102 20.0 0.0 10.0 2.3 124 chr3R 15868915 intron CG31183 - chr3R 15868977 intron CG31183 - chr3R 15869039 intron CG31183 - chr3R_25_15865001 chr3R_15865001 RAL-303_100b 4117 chr3R 15891322 15891382 chr3R 15891435 15891495 49 111 19.5 5.0 12.2 3.7 173 chr3R 15891322 intron CG14877 - chr3R 15891408 intron CG14877 - chr3R 15891495 intron CG14877 - chr3R_49_15890001 chr3R_15890001 RAL-303_100b 4118 chr3R 16033386 16033441 chr3R 16033492 16033547 29 105 5.0 6.5 5.8 4.3 161 chr3R 16033386 intron pnr + chr3R 16033466 intron pnr + chr3R 16033547 intron pnr + chr3R_29_16030001 chr3R_16030001 RAL-303_100b 4119 chr3R 16048828 16048855 chr3R 16048943 16048968 16 109 27.5 14.0 20.8 0.7 140 chr3R 16048828 intron ird5 - chr3R 16048898 intron ird5 - chr3R 16048968 intron ird5 - chr3R_16_16045001 chr3R_16045001 RAL-303_100b 4120 chr3R 16048857 16048882 chr3R 16048941 16048995 37 103 9.5 11.0 10.2 3.3 138 chr3R 16048857 intron ird5 - chr3R 16048926 intron ird5 - chr3R 16048995 intron ird5 - chr3R_37_16045001 chr3R_16045001 RAL-303_100b 4121 chr3R 16218834 16218893 chr3R 16219018 16219073 57 177 11.5 18.0 14.8 3.6 239 chr3R 16218834 intergenic not near genes chr3R 16218954 intergenic not near genes chr3R 16219073 intergenic not near genes chr3R_57_16215001 chr3R_16215001 RAL-303_100b 4122 chr3R 16225062 16225119 chr3R 16225172 16225229 51 109 9.0 16.0 12.5 3.8 167 chr3R 16225062 intergenic not near genes chr3R 16225146 intergenic not near genes chr3R 16225229 intergenic tara + chr3R_51_16225001 chr3R_16225001 RAL-303_100b 4123 chr3R 16246524 16246557 chr3R 16246625 16246658 32 98 6.5 31.0 18.8 1.6 134 chr3R 16246524 intron tara + chr3R 16246591 intron tara + chr3R 16246658 intron tara + chr3R_32_16245001 chr3R_16245001 RAL-303_100b 4124 chr3R 16260791 16260840 chr3R 16260897 16260945 11 105 0.5 16.5 8.5 1.2 154 chr3R 16260791 intergenic tara + chr3R 16260868 intergenic bor - chr3R 16260945 intergenic bor - chr3R_11_16260001 chr3R_16260001 RAL-303_100b 4125 chr3R 16472561 16472586 chr3R 16472662 16472687 21 98 32.5 22.5 27.5 0.7 126 chr3R 16472561 intergenic Gyc-89Da + chr3R 16472624 5` UTR Gyc-89Da + chr3R 16472687 5` UTR Gyc-89Da + chr3R_21_16470001 chr3R_16470001 RAL-303_100b 4126 chr3R 16472587 16472597 chr3R 16472650 16472688 14 86 28.5 24.0 26.2 0.5 101 chr3R 16472587 intergenic Gyc-89Da + chr3R 16472638 5` UTR Gyc-89Da + chr3R 16472688 5` UTR Gyc-89Da + chr3R_14_16470001 chr3R_16470001 RAL-303_100b 4127 chr3R 16519904 16519921 chr3R 16520022 16520039 14 118 44.5 17.0 30.8 0.4 135 chr3R 16519904 intron CG42342 + chr3R 16519972 intron CG42342 + chr3R 16520039 intron CG42342 + chr3R_14_16515001 chr3R_16515001 RAL-303_100b 4128 chr3R 16519923 16519932 chr3R 16520021 16520050 13 115 39.5 17.0 28.2 0.4 127 chr3R 16519923 intron CG42342 + chr3R 16519986 intron CG42342 + chr3R 16520050 intron CG42342 + chr3R_13_16515001 chr3R_16515001 RAL-303_100b 4129 chr3R 16529208 16529252 chr3R 16529451 16529492 42 241 12.5 15.0 13.8 2.8 284 chr3R 16529208 intron CG42342 + chr3R 16529350 intron CG42342 + chr3R 16529492 intron CG42342 + chr3R_42_16525001 chr3R_16525001 RAL-303_100b 4130 chr3R 16530997 16531050 chr3R 16531114 16531126 51 108 17.0 17.5 17.2 2.8 129 chr3R 16530997 intron CG42342 + chr3R 16531062 intron CG42342 + chr3R 16531126 intron CG42342 + chr3R_51_16530001 chr3R_16530001 RAL-303_100b 4131 chr3R 16535495 16535519 chr3R 16535596 16535620 20 100 20.0 9.5 14.8 1.3 125 chr3R 16535495 intron CG42342 + chr3R 16535558 intron CG42342 + chr3R 16535620 intron CG42342 + chr3R_20_16535001 chr3R_16535001 RAL-303_100b 4132 chr3R 16538364 16538420 chr3R 16538562 16538618 50 194 14.5 15.0 14.8 3.2 254 chr3R 16538364 intron CG42342 + chr3R 16538491 intron CG42342 + chr3R 16538618 intron CG42342 + chr3R_50_16535001 chr3R_16535001 RAL-303_100b 4133 chr3R 16582882 16582919 chr3R 16582986 16583023 32 102 20.0 20.5 20.2 1.5 141 chr3R 16582882 intron Scp2 - chr3R 16582952 intron Scp2 - chr3R 16583023 intron Scp2 - chr3R_32_16580001 chr3R_16580001 RAL-303_100b 4134 chr3R 16585895 16585946 chr3R 16585996 16586041 41 99 10.0 11.5 10.8 3.5 146 chr3R 16585895 intergenic not near genes chr3R 16585968 intergenic not near genes chr3R 16586041 intergenic not near genes chr3R_41_16585001 chr3R_16585001 RAL-303_100b 4135 chr3R 16601384 16601440 chr3R 16601501 16601537 40 115 16.5 24.0 20.2 1.9 153 chr3R 16601384 intron CG10345 - chr3R 16601460 intron CG10345 - chr3R 16601537 intron CG10345 - chr3R_40_16600001 chr3R_16600001 RAL-303_100b 4136 chr3R 16675288 16675344 chr3R 16675427 16675483 77 138 9.0 15.0 12.0 5.9 195 chr3R 16675288 intron Ubx - chr3R 16675386 intron Ubx - chr3R 16675483 intron Ubx - chr3R_77_16675001 chr3R_16675001 RAL-303_100b 4137 chr3R 16734853 16734879 chr3R 16734961 16734987 16 107 0.0 5.5 2.8 4.2 134 chr3R 16734853 intergenic Ubx - chr3R 16734920 intergenic Ubx - chr3R 16734987 intergenic not near genes chr3R_16_16730001 chr3R_16730001 RAL-303_100b 4138 chr3R 16743953 16743976 chr3R 16744074 16744097 19 120 28.0 5.0 16.5 1.1 144 chr3R 16743953 intron bxd - chr3R 16744025 intron bxd - chr3R 16744097 intron bxd - chr3R_19_16740001 chr3R_16740001 RAL-303_100b 4139 chr3R 16756293 16756349 chr3R 16762509 16762529 diver 34 6210 13.5 9.0 11.2 2.8 6236 chr3R 16756293 intron bxd - chr3R 16759411 intron bxd - chr3R 16762529 intron bxd - chr3R_34_16755001 chr3R_16755001 RAL-303_100b 4140 chr3R 16836936 16836988 chr3R 16837290 16837342 35 352 15.5 15.5 15.5 2.1 406 chr3R 16836936 intron iab-8 - chr3R 16837139 intron iab-8 - chr3R 16837342 intron iab-8 - chr3R_35_16835001 chr3R_16835001 RAL-303_100b 4141 chr3R 16895292 16895339 chr3R 16895411 16895458 37 118 9.5 11.5 10.5 3.2 166 chr3R 16895292 intron,intron iab-8 -,CR43617 + chr3R 16895375 intron,intron iab-8 -,CR43617 + chr3R 16895458 intron,intron iab-8 -,CR43617 + chr3R_37_16895001 chr3R_16895001 RAL-303_100b 4142 chr3R 10451875 10451877 chr3R 16910586 16910586 5 6458710 78.0 73.0 75.5 0.1 6458711 chr3R 10451875 intergenic not near genes chr3R 13681230 exon omd - chr3R 16910586 intron iab-8 - chr3R_5_13680001 chr3R_13680001 RAL-303_100b 4143 chr3R 17012935 17012982 chr3R 17013036 17013083 43 100 17.0 17.0 17.0 2.4 148 chr3R 17012935 intergenic CG8907 + chr3R 17013009 intergenic CG8907 + chr3R 17013083 intergenic not near genes chr3R_43_17010001 chr3R_17010001 RAL-303_100b 4144 chr3R 17023943 17024002 chr3R 17024121 17024180 36 175 13.5 0.0 6.8 4.6 237 chr3R 17023943 intron Pxd + chr3R 17024062 intron Pxd + chr3R 17024180 intron Pxd + chr3R_36_17020001 chr3R_17020001 RAL-303_100b 4145 chr3R 17027593 17027595 chr3R 17030918 17030920 4 3325 85.0 99.5 92.2 0.0 3327 chr3R 17027593 intron Pxd + chr3R 17029256 exon CG5225 + chr3R 17030920 intergenic CG5225 + chr3R_4_17025001 chr3R_17025001 RAL-303_100b 4146 chr3R 17027591 17027647 chr3R 17030921 17030972 23 3327 110.0 98.0 104.0 0.2 3381 chr3R 17027591 intron Pxd + chr3R 17029282 exon CG5225 + chr3R 17030972 intergenic CG5225 + chr3R_23_17025001 chr3R_17025001 RAL-303_100b 4147 chr3R 17121497 17121556 chr3R 17121717 17121764 54 219 12.5 9.5 11.0 4.5 267 chr3R 17121497 intron cher - chr3R 17121630 intron,exon cher -,CG42779 + chr3R 17121764 intron,exon cher -,CG42779 + chr3R_54_17120001 chr3R_17120001 RAL-303_100b 4148 chr3R 17163446 17163503 chr3R 17163552 17163609 47 104 8.5 11.0 9.8 4.4 163 chr3R 17163446 intron Mur89F - chr3R 17163528 intron Mur89F - chr3R 17163609 intron Mur89F - chr3R_47_17160001 chr3R_17160001 RAL-303_100b 4149 chr3R 17245471 17245485 chr3R 17245622 17245642 13 155 9.5 29.5 19.5 0.6 171 chr3R 17245471 intron beat-IIb - chr3R 17245556 intron beat-IIb - chr3R 17245642 intron beat-IIb - chr3R_13_17245001 chr3R_17245001 RAL-303_100b 4150 chr3R 17272837 17272868 chr3R 17272973 17273031 48 139 10.5 19.0 14.8 3.0 194 chr3R 17272837 intergenic not near genes chr3R 17272934 intergenic not near genes chr3R 17273031 intergenic not near genes chr3R_48_17270001 chr3R_17270001 RAL-303_100b 4151 chr3R 17294642 17294705 chr3R 17295095 17295163 BS 36 454 12.0 0.0 6.0 5.1 521 chr3R 17294642 intergenic not near genes chr3R 17294902 intergenic not near genes chr3R 17295163 intergenic not near genes chr3R_36_17290001 chr3R_17290001 RAL-303_100b 4152 chr3R 17346667 17346712 chr3R 17348255 17348300 F-element 37 1587 9.0 19.0 14.0 2.5 1633 chr3R 17346667 intron beat-IIa - chr3R 17347484 intron beat-IIa - chr3R 17348300 intron beat-IIa - chr3R_37_17345001 chr3R_17345001 RAL-303_100b 4153 chr3R 17355471 17355523 chr3R 17355568 17355626 51 95 18.0 12.5 15.2 3.1 155 chr3R 17355471 intron beat-IIa - chr3R 17355548 intron beat-IIa - chr3R 17355626 intron beat-IIa - chr3R_51_17355001 chr3R_17355001 RAL-303_100b 4154 chr3R 17370502 17370559 chr3R 17370602 17370639 48 95 9.5 7.0 8.2 5.2 137 chr3R 17370502 intergenic not near genes chr3R 17370570 intergenic not near genes chr3R 17370639 intergenic not near genes chr3R_48_17370001 chr3R_17370001 RAL-303_100b 4155 chr3R 17371380 17371431 chr3R 17371481 17371515 23 97 13.5 15.0 14.2 1.5 135 chr3R 17371380 3` UTR CR44256 - chr3R 17371448 3` UTR CR44256 - chr3R 17371515 3` UTR CR44256 - chr3R_23_17370001 chr3R_17370001 RAL-303_100b 4156 chr3R 17461173 17461232 chr3R 17461280 17461339 49 106 12.0 9.0 10.5 4.3 166 chr3R 17461173 intergenic not near genes chr3R 17461256 intergenic not near genes chr3R 17461339 intergenic not near genes chr3R_49_17460001 chr3R_17460001 RAL-303_100b 4157 chr3R 17497939 17497992 chr3R 17498048 17498103 52 109 9.5 13.0 11.2 4.3 164 chr3R 17497939 intron Dscam3 - chr3R 17498021 intron Dscam3 - chr3R 17498103 intron Dscam3 - chr3R_52_17495001 chr3R_17495001 RAL-303_100b 4158 chr3R 17506335 17506393 chr3R 17506438 17506489 21 101 6.0 10.5 8.2 2.3 154 chr3R 17506335 intergenic not near genes chr3R 17506412 intergenic not near genes chr3R 17506489 intergenic not near genes chr3R_21_17505001 chr3R_17505001 RAL-303_100b 4159 chr3R 17509239 17509253 chr3R 17516805 17516808 412 10 7564 17.0 38.0 27.5 0.4 7569 chr3R 17509239 intergenic not near genes chr3R 17513024 intergenic not near genes chr3R 17516808 intergenic not near genes chr3R_10_17510001 chr3R_17510001 RAL-303_100b 4160 chr3R 17521571 17521587 chr3R 17521720 17521771 23 174 7.0 15.0 11.0 1.9 200 chr3R 17521571 intergenic not near genes chr3R 17521671 intergenic not near genes chr3R 17521771 intergenic not near genes chr3R_23_17520001 chr3R_17520001 RAL-303_100b 4161 chr3R 17522193 17522236 chr3R 17522306 17522308 12 111 17.0 0.5 8.8 1.2 115 chr3R 17522193 intergenic not near genes chr3R 17522250 intergenic not near genes chr3R 17522308 intergenic not near genes chr3R_12_17520001 chr3R_17520001 RAL-303_100b 4162 chr3R 17524927 17524928 chr3R 17525027 17525033 4 103 0.0 27.0 13.5 0.3 106 chr3R 17524927 intergenic not near genes chr3R 17524980 intergenic not near genes chr3R 17525033 intergenic not near genes chr3R_4_17520001 chr3R_17520001 RAL-303_100b 4163 chr3R 17566303 17566313 chr3R 17566578 17566588 10 274 37.5 23.0 30.2 0.3 285 chr3R 17566303 intron Hmx + chr3R 17566446 intron Hmx + chr3R 17566588 intron Hmx + chr3R_10_17565001 chr3R_17565001 RAL-303_100b 4164 chr3R 17566314 17566330 chr3R 17566577 17566592 25 271 28.5 21.0 24.8 1.0 278 chr3R 17566314 intron Hmx + chr3R 17566453 intron Hmx + chr3R 17566592 intron Hmx + chr3R_25_17565001 chr3R_17565001 RAL-303_100b 4165 chr3R 17566332 17566359 chr3R 17566576 17566634 39 271 14.0 20.0 17.0 2.2 302 chr3R 17566332 intron Hmx + chr3R 17566483 intron Hmx + chr3R 17566634 intron Hmx + chr3R_39_17565001 chr3R_17565001 RAL-303_100b 4166 chr3R 17591259 17591326 chr3R 17591720 17591752 F-element 36 456 12.5 12.5 12.5 2.7 493 chr3R 17591259 intergenic not near genes chr3R 17591506 intergenic not near genes chr3R 17591752 intergenic not near genes chr3R_36_17590001 chr3R_17590001 RAL-303_100b 4167 chr3R 17638327 17638339 chr3R 17638838 17638850 roo 8 510 0.0 13.5 6.8 1.0 523 chr3R 17638327 intron CG43175 + chr3R 17638588 intron CG43175 + chr3R 17638850 intron,intron CG43175 +,CR45222 + chr3R_8_17635001 chr3R_17635001 RAL-303_100b 4168 chr3R 17647221 17647273 chr3R 17647343 17647395 31 120 8.5 7.5 8.0 3.4 174 chr3R 17647221 intergenic CG14322 + chr3R 17647308 intergenic CG14322 + chr3R 17647395 intergenic CG14322 + chr3R_31_17645001 chr3R_17645001 RAL-303_100b 4169 chr3R 17723175 17723210 chr3R 17723347 17723382 27 170 17.0 28.0 22.5 1.1 207 chr3R 17723175 intergenic Pxt + chr3R 17723278 intergenic Pxt + chr3R 17723382 intergenic Pxt + chr3R_27_17720001 chr3R_17720001 RAL-303_100b 4170 chr3R 17725047 17725076 chr3R 17725166 17725183 23 117 17.0 0.0 8.5 2.4 136 chr3R 17725047 intergenic Atg8b - chr3R 17725115 intergenic Atg8b - chr3R 17725183 intergenic Atg8b - chr3R_23_17725001 chr3R_17725001 RAL-303_100b 4171 chr3R 17763136 17763166 chr3R 17763647 17763648 roo 10 505 33.5 16.0 24.8 0.4 512 chr3R 17763136 5` UTR TyrR - chr3R 17763392 intergenic TyrR - chr3R 17763648 intergenic TyrR - chr3R_10_17760001 chr3R_17760001 RAL-303_100b 4172 chr3R 17773367 17773393 chr3R 17773472 17773498 21 104 14.0 16.5 15.2 1.3 131 chr3R 17773367 intron CG43102 - chr3R 17773432 intron CG43102 - chr3R 17773498 exon CG43102 - chr3R_21_17770001 chr3R_17770001 RAL-303_100b 4173 chr3R 17811171 17811200 chr3R 17811276 17811305 15 105 19.0 0.0 9.5 1.4 134 chr3R 17811171 intergenic CG18012 -,tinc + chr3R 17811238 intergenic CG18012 -,tinc + chr3R 17811305 intergenic CG18012 -,tinc + chr3R_15_17810001 chr3R_17810001 RAL-303_100b 4174 chr3R 17823185 17823230 chr3R 17823295 17823302 36 108 12.5 12.5 12.5 2.7 117 chr3R 17823185 intron tinc + chr3R 17823244 intron tinc + chr3R 17823302 intron tinc + chr3R_36_17820001 chr3R_17820001 RAL-303_100b 4175 chr3R 17825893 17825932 chr3R 17825997 17826039 7 106 0.0 6.0 3.0 1.8 146 chr3R 17825893 intron tinc + chr3R 17825966 intron tinc + chr3R 17826039 intron tinc + chr3R_7_17825001 chr3R_17825001 RAL-303_100b 4176 chr3R 17845092 17845219 chr3R 17845205 17845291 24 99 3.0 0.5 1.8 8.6 199 chr3R 17845092 intron tinc + chr3R 17845192 intron tinc + chr3R 17845291 intron tinc + chr3R_24_17845001 chr3R_17845001 RAL-303_100b 4177 chr3R 17856017 17856042 chr3R 17856142 17856155 21 121 35.5 14.0 24.8 0.8 138 chr3R 17856017 intron tinc + chr3R 17856086 intron tinc + chr3R 17856155 intron tinc + chr3R_21_17855001 chr3R_17855001 RAL-303_100b 4178 chr3R 17881609 17881620 chr3R 19554255 19554257 6 1672641 50.0 68.5 59.2 0.1 1672648 chr3R 17881609 intron Rim - chr3R 18717933 intron,3` UTR Cha +,VAChT + chr3R 19554257 intron Dys + chr3R_6_18715001 chr3R_18715001 RAL-303_100b 4179 chr3R 17925830 17925885 chr3R 17927322 17927366 hobo 37 1485 10.5 20.5 15.5 2.2 1536 chr3R 17925830 intron cpo + chr3R 17926598 intron cpo + chr3R 17927366 intron cpo + chr3R_37_17925001 chr3R_17925001 RAL-303_100b 4180 chr3R 17955784 17955840 chr3R 17955885 17955935 9 100 15.0 2.5 8.8 0.9 151 chr3R 17955784 intron cpo + chr3R 17955860 intron cpo + chr3R 17955935 intron cpo + chr3R_9_17955001 chr3R_17955001 RAL-303_100b 4181 chr3R 17958046 17958052 chr3R 17958147 17958156 8 103 0.0 34.0 17.0 0.4 110 chr3R 17958046 intron cpo + chr3R 17958101 intron cpo + chr3R 17958156 intron cpo + chr3R_8_17955001 chr3R_17955001 RAL-303_100b 4182 chr3R 18032756 18032808 chr3R 18040454 18040508 opus 15 7700 0.0 11.5 5.8 2.2 7752 chr3R 18032756 intergenic not near genes chr3R 18036632 intergenic not near genes chr3R 18040508 intergenic not near genes chr3R_15_18035001 chr3R_18035001 RAL-303_100b 4183 chr3R 18041739 18041748 chr3R 18041841 18041850 11 102 4.0 2.0 3.0 2.8 111 chr3R 18041739 intergenic not near genes chr3R 18041794 intergenic not near genes chr3R 18041850 intergenic not near genes chr3R_11_18040001 chr3R_18040001 RAL-303_100b 4184 chr3R 18041750 18041764 chr3R 18041837 18041853 13 98 4.0 2.0 3.0 3.2 103 chr3R 18041750 intergenic not near genes chr3R 18041802 intergenic not near genes chr3R 18041853 intergenic not near genes chr3R_13_18040001 chr3R_18040001 RAL-303_100b 4185 chr3R 18061420 18061458 chr3R 18061537 18061575 22 117 8.0 0.0 4.0 4.4 155 chr3R 18061420 intergenic not near genes chr3R 18061498 intergenic not near genes chr3R 18061575 intergenic not near genes chr3R_22_18060001 chr3R_18060001 RAL-303_100b 4186 chr3R 18061547 18061615 chr3R 18063146 18063208 F-element 8 1598 0.0 0.0 0.0 8.0 1661 chr3R 18061547 intergenic not near genes chr3R 18062378 intergenic not near genes chr3R 18063208 intergenic not near genes chr3R_8_18060001 chr3R_18060001 RAL-303_100b 4187 chr3R 18065627 18065664 chr3R 18065747 18065785 10 127 4.0 13.5 8.8 1.0 158 chr3R 18065627 intergenic not near genes chr3R 18065706 intergenic not near genes chr3R 18065785 intergenic not near genes chr3R_10_18065001 chr3R_18065001 RAL-303_100b 4188 chr3R 18078131 18078154 chr3R 18078235 18078258 4 104 68.0 45.0 56.5 0.1 127 chr3R 18078131 intergenic not near genes chr3R 18078194 intergenic not near genes chr3R 18078258 intergenic not near genes chr3R_4_18075001 chr3R_18075001 RAL-303_100b 4189 chr3R 18098282 18098288 chr3R 18098384 18098390 5 102 39.5 30.0 34.8 0.1 108 chr3R 18098282 intron sr + chr3R 18098336 intron sr + chr3R 18098390 intron sr + chr3R_5_18095001 chr3R_18095001 RAL-303_100b 4190 chr3R 18101354 18101389 chr3R 18101449 18101490 18 98 40.0 31.5 35.8 0.5 136 chr3R 18101354 intron sr + chr3R 18101422 intron sr + chr3R 18101490 intron sr + chr3R_18_18100001 chr3R_18100001 RAL-303_100b 4191 chr3R 18107119 18107136 chr3R 18107227 18107244 7 108 7.0 22.0 14.5 0.5 125 chr3R 18107119 intron sr + chr3R 18107182 intron sr + chr3R 18107244 intron sr + chr3R_7_18105001 chr3R_18105001 RAL-303_100b 4192 chr3R 18117393 18117438 chr3R 18117494 18117539 7 99 38.5 40.0 39.2 0.2 146 chr3R 18117393 intron sr + chr3R 18117466 intron sr + chr3R 18117539 intron sr + chr3R_7_18115001 chr3R_18115001 RAL-303_100b 4193 chr3R 18122876 18122914 chr3R 18122978 18123016 11 102 9.5 9.0 9.2 1.1 140 chr3R 18122876 intron sr + chr3R 18122946 intron sr + chr3R 18123016 intron sr + chr3R_11_18120001 chr3R_18120001 RAL-303_100b 4194 chr3R 18126185 18126226 chr3R 18126289 18126329 16 103 36.5 39.0 37.8 0.4 144 chr3R 18126185 intron sr + chr3R 18126257 intron sr + chr3R 18126329 intron sr + chr3R_16_18125001 chr3R_18125001 RAL-303_100b 4195 chr3R 18136212 18136254 chr3R 18136349 18136378 15 137 13.0 14.0 13.5 1.0 166 chr3R 18136212 intergenic not near genes chr3R 18136295 intergenic not near genes chr3R 18136378 intergenic not near genes chr3R_15_18135001 chr3R_18135001 RAL-303_100b 4196 chr3R 18157574 18157621 chr3R 18157706 18157754 16 132 0.0 16.5 8.2 1.7 180 chr3R 18157574 intergenic CR45103 + chr3R 18157664 intergenic CR45103 + chr3R 18157754 5` UTR CR45103 + chr3R_16_18155001 chr3R_18155001 RAL-303_100b 4197 chr3R 18174706 18174731 chr3R 18174796 18174822 6 102 28.0 32.5 30.2 0.2 116 chr3R 18174706 intron PP2A-B' + chr3R 18174764 intron PP2A-B' + chr3R 18174822 intron PP2A-B' + chr3R_6_18170001 chr3R_18170001 RAL-303_100b 4198 chr3R 18204322 18204337 chr3R 18204426 18204440 10 103 67.0 49.5 58.2 0.2 118 chr3R 18204322 intron CG7985 + chr3R 18204381 intron CG7985 + chr3R 18204440 intron CG7985 + chr3R_10_18200001 chr3R_18200001 RAL-303_100b 4199 chr3R 18215742 18215771 chr3R 18215936 18215955 10 190 7.5 45.0 26.2 0.4 213 chr3R 18215742 intergenic CG14314 + chr3R 18215848 intergenic CG14314 + chr3R 18215955 intergenic CG14314 + chr3R_10_18215001 chr3R_18215001 RAL-303_100b 4200 chr3R 18231700 18231756 chr3R 18232078 18232134 29 377 45.5 24.0 34.8 0.8 434 chr3R 18231700 intergenic not near genes chr3R 18231917 intergenic not near genes chr3R 18232134 intergenic not near genes chr3R_29_18230001 chr3R_18230001 RAL-303_100b 4201 chr3R 18295061 18295111 chr3R 18295197 18295247 31 134 29.0 53.0 41.0 0.7 186 chr3R 18295061 intron l(3)05822 - chr3R 18295154 intron l(3)05822 - chr3R 18295247 intron l(3)05822 - chr3R_31_18295001 chr3R_18295001 RAL-303_100b 4202 chr3R 18215736 18215752 chr3R 18295878 18295884 4 80136 14.5 69.0 41.8 0.1 80148 chr3R 18215736 intergenic CG14314 + chr3R 18255810 5` UTR,exon Tgs1 +,moi + chr3R 18295884 intron l(3)05822 - chr3R_4_18255001 chr3R_18255001 RAL-303_100b 4203 chr3R 18302967 18302988 chr3R 18303097 18303117 10 129 16.0 0.0 8.0 1.1 150 chr3R 18302967 intergenic CG7126 -,PKD - chr3R 18303042 intergenic CG7126 -,PKD - chr3R 18303117 intergenic PKD -,CG7126 - chr3R_10_18300001 chr3R_18300001 RAL-303_100b 4204 chr3R 18316829 18316863 chr3R 18316918 18316970 12 108 27.5 24.5 26.0 0.4 141 chr3R 18316829 3` UTR CG31235 - chr3R 18316900 3` UTR CG31235 - chr3R 18316970 3` UTR CG31235 - chr3R_12_18315001 chr3R_18315001 RAL-303_100b 4205 chr3R 18331760 18331766 chr3R 18333279 18333285 hopper2 5 1519 34.5 19.0 26.8 0.2 1525 chr3R 18331760 3` UTR CG15803 - chr3R 18332522 intron CG15803 - chr3R 18333285 3` UTR CG15803 - chr3R_5_18330001 chr3R_18330001 RAL-303_100b 4206 chr3R 18379617 18379643 chr3R 18379945 18379974 17 330 47.5 22.5 35.0 0.5 357 chr3R 18379617 intron CG7675 - chr3R 18379796 intron CG7675 - chr3R 18379974 intron CG7675 - chr3R_17_18375001 chr3R_18375001 RAL-303_100b 4207 chr3R 18379645 18379659 chr3R 18379933 18379990 12 327 46.5 17.5 32.0 0.4 345 chr3R 18379645 intron CG7675 - chr3R 18379818 intron CG7675 - chr3R 18379990 intron CG7675 - chr3R_12_18375001 chr3R_18375001 RAL-303_100b 4208 chr3R 18413448 18413499 chr3R 18413555 18413606 8 106 13.5 22.5 18.0 0.4 158 chr3R 18413448 intergenic not near genes chr3R 18413527 intergenic not near genes chr3R 18413606 intergenic not near genes chr3R_8_18410001 chr3R_18410001 RAL-303_100b 4209 chr3R 18434000 18434050 chr3R 18434104 18434154 6 102 36.0 33.0 34.5 0.2 154 chr3R 18434000 intron fru - chr3R 18434077 intron fru - chr3R 18434154 intron fru - chr3R_6_18430001 chr3R_18430001 RAL-303_100b 4210 chr3R 18464289 18464340 chr3R 18464452 18464504 23 163 0.0 12.5 6.2 3.2 215 chr3R 18464289 intron fru - chr3R 18464396 intron fru - chr3R 18464504 intron fru - chr3R_23_18460001 chr3R_18460001 RAL-303_100b 4211 chr3R 18472258 18472296 chr3R 18472384 18472422 28 125 6.0 5.5 5.8 4.1 164 chr3R 18472258 intron fru - chr3R 18472340 intron fru - chr3R 18472422 intron fru - chr3R_28_18470001 chr3R_18470001 RAL-303_100b 4212 chr3R 18473226 18473237 chr3R 18473338 18473349 6 112 0.0 0.0 0.0 6.0 123 chr3R 18473226 intron fru - chr3R 18473288 intron fru - chr3R 18473349 intron fru - chr3R_6_18470001 chr3R_18470001 RAL-303_100b 4213 chr3R 18500713 18500739 chr3R 18500859 18500885 19 145 6.0 28.0 17.0 1.1 172 chr3R 18500713 intron fru - chr3R 18500799 intron fru - chr3R 18500885 intron fru - chr3R_19_18500001 chr3R_18500001 RAL-303_100b 4214 chr3R 18501564 18501626 chr3R 18501670 18501732 59 104 16.0 13.5 14.8 3.7 168 chr3R 18501564 intron fru - chr3R 18501648 intron fru - chr3R 18501732 intron fru - chr3R_59_18500001 chr3R_18500001 RAL-303_100b 4215 chr3R 18559408 18559516 chr3R 18559506 18559661 7 108 0.0 0.0 0.0 7.0 253 chr3R 18559408 intergenic CG7691 + chr3R 18559534 intergenic CG7691 + chr3R 18559661 intergenic CG7691 + chr3R_7_18555001 chr3R_18555001 RAL-303_100b 4216 chr3R 18579472 18579525 chr3R 18579572 18579651 8 104 11.0 4.5 7.8 0.9 179 chr3R 18579472 intron,intron CG7694 +,fray + chr3R 18579562 intron,intron CG7694 +,fray + chr3R 18579651 intron,intron CG7694 +,fray + chr3R_8_18575001 chr3R_18575001 RAL-303_100b 4217 chr3R 18606500 18606533 chr3R 18610746 18610780 F-element 43 4246 9.0 9.0 9.0 4.3 4280 chr3R 18606500 intron,intron qin +,CG14304 - chr3R 18608640 intron,intron qin +,CG14304 - chr3R 18610780 intron,intron qin +,CG14304 - chr3R_43_18605001 chr3R_18605001 RAL-303_100b 4218 chr3R 18615346 18615403 chr3R 18615463 18615520 32 115 3.0 13.5 8.2 3.5 174 chr3R 18615346 intron,intron qin +,CG14304 - chr3R 18615433 intron,intron qin +,CG14304 - chr3R 18615520 intron,intron qin +,CG14304 - chr3R_32_18615001 chr3R_18615001 RAL-303_100b 4219 chr3R 18617686 18617740 chr3R 18617791 18617845 24 103 8.5 11.0 9.8 2.2 159 chr3R 18617686 intron,intron qin +,CG14304 - chr3R 18617766 intron,intron qin +,CG14304 - chr3R 18617845 intron,intron qin +,CG14304 - chr3R_24_18615001 chr3R_18615001 RAL-303_100b 4220 chr3R 18618240 18618296 chr3R 18618350 18618406 31 109 9.5 11.5 10.5 2.7 166 chr3R 18618240 intron,intron qin +,CG14304 - chr3R 18618323 intron,intron qin +,CG14304 - chr3R 18618406 intron,intron qin +,CG14304 - chr3R_31_18615001 chr3R_18615001 RAL-303_100b 4221 chr3R 18670360 18670367 chr3R 18670478 18670483 7 118 41.0 15.0 28.0 0.2 123 chr3R 18670360 intron CG7702 + chr3R 18670422 intron CG7702 + chr3R 18670483 intron CG7702 + chr3R_7_18670001 chr3R_18670001 RAL-303_100b 4222 chr3R 18670368 18670371 chr3R 18670476 18670489 6 116 39.0 14.5 26.8 0.2 121 chr3R 18670368 intron CG7702 + chr3R 18670428 intron CG7702 + chr3R 18670489 intron CG7702 + chr3R_6_18670001 chr3R_18670001 RAL-303_100b 4223 chr3R 18670372 18670412 chr3R 18670475 18670530 42 116 14.5 14.5 14.5 2.7 158 chr3R 18670372 intron CG7702 + chr3R 18670451 intron CG7702 + chr3R 18670530 intron CG7702 + chr3R_42_18670001 chr3R_18670001 RAL-303_100b 4224 chr3R 18720284 18720341 chr3R 18720405 18720462 49 117 10.5 20.0 15.2 3.0 178 chr3R 18720284 intron Cha + chr3R 18720373 intron Cha + chr3R 18720462 intron Cha + chr3R_49_18720001 chr3R_18720001 RAL-303_100b 4225 chr3R 18766750 18766808 chr3R 18766853 18766911 69 100 15.5 15.0 15.2 4.3 161 chr3R 18766750 intron CG7720 - chr3R 18766830 intron CG7720 - chr3R 18766911 intron CG7720 - chr3R_69_18765001 chr3R_18765001 RAL-303_100b 4226 chr3R 18781672 18781690 chr3R 18781773 18781791 8 101 35.5 17.0 26.2 0.3 119 chr3R 18781672 intron CG7720 - chr3R 18781732 intron CG7720 - chr3R 18781791 intron CG7720 - chr3R_8_18780001 chr3R_18780001 RAL-303_100b 4227 chr3R 18781691 18781727 chr3R 18781771 18781798 29 95 15.5 16.5 16.0 1.7 107 chr3R 18781691 intron CG7720 - chr3R 18781744 intron CG7720 - chr3R 18781798 intron CG7720 - chr3R_29_18780001 chr3R_18780001 RAL-303_100b 4228 chr3R 18785846 18785902 chr3R 18785948 18786004 62 100 15.0 13.5 14.2 4.1 158 chr3R 18785846 intron CG7720 - chr3R 18785925 intron CG7720 - chr3R 18786004 intron CG7720 - chr3R_62_18785001 chr3R_18785001 RAL-303_100b 4229 chr3R 18791488 18791519 chr3R 18791579 18791602 20 97 8.5 5.0 6.8 2.6 114 chr3R 18791488 intron CG7720 - chr3R 18791545 intron CG7720 - chr3R 18791602 intron CG7720 - chr3R_20_18790001 chr3R_18790001 RAL-303_100b 4230 chr3R 18792780 18792836 chr3R 18792888 18792944 21 105 10.5 0.0 5.2 3.4 164 chr3R 18792780 intron CG7720 - chr3R 18792862 intron CG7720 - chr3R 18792944 intron CG7720 - chr3R_21_18790001 chr3R_18790001 RAL-303_100b 4231 chr3R 18807501 18807504 chr3R 18807608 18807611 4 107 0.5 41.0 20.8 0.2 110 chr3R 18807501 intron CG18208 - chr3R 18807556 intron CG18208 - chr3R 18807611 intron CG18208 - chr3R_4_18805001 chr3R_18805001 RAL-303_100b 4232 chr3R 18812062 18812108 chr3R 18812160 18812196 45 99 19.0 19.0 19.0 2.2 134 chr3R 18812062 intron CG18208 - chr3R 18812129 intron CG18208 - chr3R 18812196 intron CG18208 - chr3R_45_18810001 chr3R_18810001 RAL-303_100b 4233 chr3R 18830037 18830091 chr3R 18830200 18830254 49 161 8.5 9.5 9.0 4.9 217 chr3R 18830037 intron CG18208 - chr3R 18830146 intron CG18208 - chr3R 18830254 intron CG18208 - chr3R_49_18830001 chr3R_18830001 RAL-303_100b 4234 chr3R 8991687 8991690 chr3R 18835817 18835820 5 9844130 59.0 64.0 61.5 0.1 9844133 chr3R 8991687 exon E(var)3-9 - chr3R 13913754 intergenic not near genes chr3R 18835820 intron CG18208 - chr3R_5_13910001 chr3R_13910001 RAL-303_100b 4235 chr3R 18877985 18878038 chr3R 18878137 18878189 41 149 10.5 13.5 12.0 3.2 204 chr3R 18877985 intergenic not near genes chr3R 18878087 intergenic not near genes chr3R 18878189 intergenic not near genes chr3R_41_18875001 chr3R_18875001 RAL-303_100b 4236 chr3R 18887576 18887598 chr3R 18887682 18887704 26 105 30.0 30.5 30.2 0.8 128 chr3R 18887576 intergenic not near genes chr3R 18887640 intergenic not near genes chr3R 18887704 intergenic not near genes chr3R_26_18885001 chr3R_18885001 RAL-303_100b 4237 chr3R 18932569 18932604 chr3R 18932949 18932958 28 377 8.5 24.5 16.5 1.6 389 chr3R 18932569 intron CG42613 + chr3R 18932764 intron CG42613 + chr3R 18932958 intron CG42613 + chr3R_28_18930001 chr3R_18930001 RAL-303_100b 4238 chr3R 18933797 18933809 chr3R 18933882 18933902 6 97 32.5 39.0 35.8 0.2 105 chr3R 18933797 intron CG42613 + chr3R 18933850 intron CG42613 + chr3R 18933902 intron CG42613 + chr3R_6_18930001 chr3R_18930001 RAL-303_100b 4239 chr3R 19106807 19106841 chr3R 19106912 19106914 6 93 17.0 1.5 9.2 0.6 107 chr3R 19106807 intron CG6040 + chr3R 19106860 intron CG6040 + chr3R 19106914 intron CG6040 + chr3R_6_19105001 chr3R_19105001 RAL-303_100b 4240 chr3R 19109197 19109249 chr3R 19109334 19109386 44 131 14.0 9.0 11.5 3.5 189 chr3R 19109197 intron CG6040 + chr3R 19109292 intron CG6040 + chr3R 19109386 intron CG6040 + chr3R_44_19105001 chr3R_19105001 RAL-303_100b 4241 chr3R 19193002 19193014 chr3R 19197280 19197283 F-element 9 4305 4.0 15.0 9.5 0.9 4281 chr3R 19193002 intron CG31475 + chr3R 19195142 intron CG31475 + chr3R 19197283 intron CG31475 + chr3R_9_19195001 chr3R_19195001 RAL-303_100b 4242 chr3R 19271396 19271443 chr3R 19271506 19271553 28 94 17.0 20.0 18.5 1.4 157 chr3R 19271396 intergenic not near genes chr3R 19271474 intergenic not near genes chr3R 19271553 intergenic not near genes chr3R_28_19270001 chr3R_19270001 RAL-303_100b 4243 chr3R 19276909 19276942 chr3R 19277014 19277044 24 105 16.5 0.5 8.5 2.5 135 chr3R 19276909 intergenic not near genes chr3R 19276976 intergenic not near genes chr3R 19277044 intergenic not near genes chr3R_24_19275001 chr3R_19275001 RAL-303_100b 4244 chr3R 19337194 19337210 chr3R 19337294 19337307 8 98 35.0 47.5 41.2 0.2 113 chr3R 19337194 intergenic not near genes chr3R 19337250 intergenic not near genes chr3R 19337307 intergenic not near genes chr3R_8_19335001 chr3R_19335001 RAL-303_100b 4245 chr3R 19340371 19340430 chr3R 19340473 19340532 50 100 17.0 16.5 16.8 2.8 161 chr3R 19340371 intergenic not near genes chr3R 19340452 intergenic not near genes chr3R 19340532 intergenic not near genes chr3R_50_19340001 chr3R_19340001 RAL-303_100b 4246 chr3R 19369488 19369518 chr3R 19369599 19369630 18 109 4.0 16.0 10.0 1.6 142 chr3R 19369488 intron Ino80 - chr3R 19369559 intron Ino80 - chr3R 19369630 intron Ino80 - chr3R_18_19365001 chr3R_19365001 RAL-303_100b 4247 chr3R 19418387 19418395 chr3R 19418504 19418512 9 117 36.5 1.0 18.8 0.5 125 chr3R 19418387 intron CG31221 + chr3R 19418450 intron CG31221 + chr3R 19418512 intron CG31221 + chr3R_9_19415001 chr3R_19415001 RAL-303_100b 4248 chr3R 19418397 19418433 chr3R 19418503 19418539 32 115 19.0 1.0 10.0 2.9 142 chr3R 19418397 intron CG31221 + chr3R 19418468 intron CG31221 + chr3R 19418539 intron CG31221 + chr3R_32_19415001 chr3R_19415001 RAL-303_100b 4249 chr3R 19429708 19429769 chr3R 19429822 19429862 32 112 11.0 2.0 6.5 4.3 154 chr3R 19429708 intron CG31221 + chr3R 19429785 intron CG31221 + chr3R 19429862 intron CG31221 + chr3R_32_19425001 chr3R_19425001 RAL-303_100b 4250 chr3R 19431495 19431499 chr3R 19431594 19431608 6 107 4.0 10.5 7.2 0.7 113 chr3R 19431495 intron CG31221 + chr3R 19431552 intron CG31221 + chr3R 19431608 intron CG31221 + chr3R_6_19430001 chr3R_19430001 RAL-303_100b 4251 chr3R 19494388 19494413 chr3R 19494493 19494518 13 105 9.0 12.5 10.8 1.1 130 chr3R 19494388 intron Dys + chr3R 19494453 intron Dys + chr3R 19494518 intron Dys + chr3R_13_19490001 chr3R_19490001 RAL-303_100b 4252 chr3R 19505913 19505968 chr3R 19506037 19506092 67 123 12.5 14.0 13.2 4.7 179 chr3R 19505913 exon Dys + chr3R 19506002 intron Dys + chr3R 19506092 intron Dys + chr3R_67_19505001 chr3R_19505001 RAL-303_100b 4253 chr3R 17881718 17881725 chr3R 19554254 19554258 5 1672533 51.5 68.0 59.8 0.1 1672540 chr3R 17881718 intron Rim - chr3R 18717988 intron,3` UTR Cha +,VAChT + chr3R 19554258 intron Dys + chr3R_5_18715001 chr3R_18715001 RAL-303_100b 4254 chr3R 19590622 19590682 chr3R 19590739 19590792 37 115 0.0 16.5 8.2 4.0 170 chr3R 19590622 exon Dys + chr3R 19590707 intron Dys + chr3R 19590792 exon Dys + chr3R_37_19590001 chr3R_19590001 RAL-303_100b 4255 chr3R 19591512 19591549 chr3R 19591617 19591655 7 106 9.0 10.0 9.5 0.7 143 chr3R 19591512 intron Dys + chr3R 19591584 intron Dys + chr3R 19591655 intron Dys + chr3R_7_19590001 chr3R_19590001 RAL-303_100b 4256 chr3R 19593481 19593517 chr3R 19593590 19593627 44 109 26.0 14.5 20.2 2.1 146 chr3R 19593481 intron Dys + chr3R 19593554 intron Dys + chr3R 19593627 intron Dys + chr3R_44_19590001 chr3R_19590001 RAL-303_100b 4257 chr3R 19683490 19683545 chr3R 19683660 19683715 43 165 8.5 14.0 11.2 3.5 225 chr3R 19683490 intron Naam + chr3R 19683602 intron Naam + chr3R 19683715 intron Naam + chr3R_43_19680001 chr3R_19680001 RAL-303_100b 4258 chr3R 19716185 19716240 chr3R 19716291 19716307 17 98 1.0 0.0 0.5 11.3 122 chr3R 19716185 intergenic CG34286 - chr3R 19716246 intergenic CG34286 - chr3R 19716307 intergenic CG34286 - chr3R_17_19715001 chr3R_19715001 RAL-303_100b 4259 chr3R 19755401 19755408 chr3R 19755521 19755528 8 118 40.0 12.5 26.2 0.3 127 chr3R 19755401 intron GluClalpha + chr3R 19755464 intron GluClalpha + chr3R 19755528 intron GluClalpha + chr3R_8_19755001 chr3R_19755001 RAL-303_100b 4260 chr3R 19755409 19755455 chr3R 19755519 19755575 40 117 17.0 11.5 14.2 2.6 166 chr3R 19755409 intron GluClalpha + chr3R 19755492 intron GluClalpha + chr3R 19755575 intron GluClalpha + chr3R_40_19755001 chr3R_19755001 RAL-303_100b 4261 chr3R 19783158 19783212 chr3R 19783271 19783325 43 111 10.5 9.0 9.8 4.0 167 chr3R 19783158 intergenic CG11407 +,CG11453 + chr3R 19783242 intergenic CG11407 +,CG11453 + chr3R 19783325 intergenic CG11407 +,CG11453 + chr3R_43_19780001 chr3R_19780001 RAL-303_100b 4262 chr3R 19793872 19793889 chr3R 19793990 19794007 19 117 43.0 14.5 28.8 0.6 135 chr3R 19793872 intergenic bnl - chr3R 19793940 intergenic bnl - chr3R 19794007 intergenic bnl - chr3R_19_19790001 chr3R_19790001 RAL-303_100b 4263 chr3R 19793890 19793898 chr3R 19793989 19794016 18 116 35.5 13.5 24.5 0.7 126 chr3R 19793890 intergenic bnl - chr3R 19793953 intergenic bnl - chr3R 19794016 intergenic bnl - chr3R_18_19790001 chr3R_19790001 RAL-303_100b 4264 chr3R 19793899 19793928 chr3R 19793988 19794046 35 114 16.5 13.5 15.0 2.2 147 chr3R 19793899 intergenic bnl - chr3R 19793972 intergenic bnl - chr3R 19794046 intergenic bnl - chr3R_35_19790001 chr3R_19790001 RAL-303_100b 4265 chr3R 19830872 19830883 chr3R 19830966 19830985 13 100 1.5 18.0 9.8 1.2 113 chr3R 19830872 intron bnl - chr3R 19830928 intron bnl - chr3R 19830985 intron bnl - chr3R_13_19830001 chr3R_19830001 RAL-303_100b 4266 chr3R 19839508 19839511 chr3R 19839765 19839768 5 257 45.5 12.0 28.8 0.2 260 chr3R 19839508 intergenic not near genes chr3R 19839638 intergenic not near genes chr3R 19839768 intergenic not near genes chr3R_5_19835001 chr3R_19835001 RAL-303_100b 4267 chr3R 19839512 19839517 chr3R 19839764 19839774 11 256 43.0 12.0 27.5 0.4 262 chr3R 19839512 intergenic not near genes chr3R 19839643 intergenic not near genes chr3R 19839774 intergenic not near genes chr3R_11_19835001 chr3R_19835001 RAL-303_100b 4268 chr3R 19839518 19839562 chr3R 19839763 19839819 39 253 15.0 11.5 13.2 2.7 301 chr3R 19839518 intergenic not near genes chr3R 19839668 intergenic not near genes chr3R 19839819 intergenic not near genes chr3R_39_19835001 chr3R_19835001 RAL-303_100b 4269 chr3R 19846934 19846995 chr3R 19847119 19847181 37 183 3.5 10.0 6.8 4.7 247 chr3R 19846934 intergenic CG4662 + chr3R 19847058 intergenic CG4662 + chr3R 19847181 intergenic CG4662 + chr3R_37_19845001 chr3R_19845001 RAL-303_100b 4270 chr3R 19908280 19908286 chr3R 19908384 19908395 9 108 0.5 23.0 11.8 0.7 115 chr3R 19908280 intron RhoGAP92B + chr3R 19908338 intron RhoGAP92B + chr3R 19908395 intron RhoGAP92B + chr3R_9_19905001 chr3R_19905001 RAL-303_100b 4271 chr3R 19908287 19908303 chr3R 19908369 19908412 12 106 0.5 18.0 9.2 1.2 125 chr3R 19908287 intron RhoGAP92B + chr3R 19908350 intron RhoGAP92B + chr3R 19908412 intron,3` UTR RhoGAP92B +,CR45048 - chr3R_12_19905001 chr3R_19905001 RAL-303_100b 4272 chr3R 19913985 19914045 chr3R 19914103 19914163 79 115 15.5 20.5 18.0 4.2 178 chr3R 19913985 3` UTR RhoGAP92B + chr3R 19914074 3` UTR RhoGAP92B + chr3R 19914163 3` UTR RhoGAP92B + chr3R_79_19910001 chr3R_19910001 RAL-303_100b 4273 chr3R 19943853 19943898 chr3R 19943958 19943977 14 97 19.0 0.0 9.5 1.3 124 chr3R 19943853 intron Hs6st - chr3R 19943915 intron Hs6st - chr3R 19943977 intron Hs6st - chr3R_14_19940001 chr3R_19940001 RAL-303_100b 4274 chr3R 19981498 19981503 chr3R 19981613 19981618 6 115 7.0 0.0 3.5 1.3 120 chr3R 19981498 intron Hs6st - chr3R 19981558 intron Hs6st - chr3R 19981618 intron Hs6st - chr3R_6_19980001 chr3R_19980001 RAL-303_100b 4275 chr3R 20041094 20041132 chr3R 20041216 20041259 23 121 20.5 14.5 17.5 1.2 165 chr3R 20041094 intron CG17193 - chr3R 20041176 intron CG17193 - chr3R 20041259 intron CG17193 - chr3R_23_20040001 chr3R_20040001 RAL-303_100b 4276 chr3R 20041134 20041145 chr3R 20041214 20041272 17 112 10.0 13.5 11.8 1.3 138 chr3R 20041134 intron CG17193 - chr3R 20041203 intron CG17193 - chr3R 20041272 intron CG17193 - chr3R_17_20040001 chr3R_20040001 RAL-303_100b 4277 chr3R 20041146 20041148 chr3R 20041213 20041260 17 99 9.0 13.5 11.2 1.4 114 chr3R 20041146 intron CG17193 - chr3R 20041203 intron CG17193 - chr3R 20041260 intron CG17193 - chr3R_17_20040001 chr3R_20040001 RAL-303_100b 4278 chr3R 20077010 20077065 chr3R 20077121 20077176 42 108 9.0 16.5 12.8 3.0 166 chr3R 20077010 intergenic not near genes chr3R 20077093 intergenic not near genes chr3R 20077176 intergenic not near genes chr3R_42_20075001 chr3R_20075001 RAL-303_100b 4279 chr3R 20109512 20109566 chr3R 20114741 20114793 copia 32 5229 4.5 16.5 10.5 2.8 5281 chr3R 20109512 intergenic not near genes chr3R 20112152 intergenic not near genes chr3R 20114793 intergenic CG10887 + chr3R_32_20110001 chr3R_20110001 RAL-303_100b 4280 chr3R 20156671 20156688 chr3R 20165866 20165883 roo 13 9193 27.5 23.0 25.2 0.5 9212 chr3R 20156671 intergenic not near genes chr3R 20161277 intergenic not near genes chr3R 20165883 intergenic not near genes chr3R_13_20160001 chr3R_20160001 RAL-303_100b 4281 chr3R 20156695 20156719 chr3R 20165859 20165914 roo 34 9189 17.0 18.5 17.8 1.8 9219 chr3R 20156695 intergenic not near genes chr3R 20161304 intergenic not near genes chr3R 20165914 intergenic not near genes chr3R_34_20160001 chr3R_20160001 RAL-303_100b 4282 chr3R 20203932 20203943 chr3R 20204038 20204049 8 106 4.5 4.0 4.2 1.5 117 chr3R 20203932 intergenic not near genes chr3R 20203990 intergenic not near genes chr3R 20204049 intergenic not near genes chr3R_8_20200001 chr3R_20200001 RAL-303_100b 4283 chr3R 20222527 20222554 chr3R 20222768 20222792 23 240 22.0 20.5 21.2 1.0 265 chr3R 20222527 intron Nlg4 + chr3R 20222660 intron Nlg4 + chr3R 20222792 intron Nlg4 + chr3R_23_20220001 chr3R_20220001 RAL-303_100b 4284 chr3R 20222555 20222581 chr3R 20222766 20222792 28 225 11.5 19.0 15.2 1.7 237 chr3R 20222555 intron Nlg4 + chr3R 20222674 intron Nlg4 + chr3R 20222792 intron Nlg4 + chr3R_28_20220001 chr3R_20220001 RAL-303_100b 4285 chr3R 20231443 20231498 chr3R 20231598 20231652 53 156 109.5 91.5 100.5 0.5 209 chr3R 20231443 intron Nlg4 + chr3R 20231548 intron Nlg4 + chr3R 20231652 intron Nlg4 + chr3R_53_20230001 chr3R_20230001 RAL-303_100b 4286 chr3R 20245254 20245305 chr3R 20248889 20248940 F-element 20 3633 10.0 8.0 9.0 2.0 3686 chr3R 20245254 3` UTR Nlg4 + chr3R 20247097 intergenic not near genes chr3R 20248940 intergenic not near genes chr3R_20_20245001 chr3R_20245001 RAL-303_100b 4287 chr3R 20266502 20266548 chr3R 20272994 20273029 Burdock 55 6494 2.0 23.0 12.5 4.1 6527 chr3R 20266502 intron cic + chr3R 20269766 intron cic + chr3R 20273029 intron cic + chr3R_55_20265001 chr3R_20265001 RAL-303_100b 4288 chr3R 20282245 20282245 chr3R 31725920 31725920 5 11443675 3.0 45.0 24.0 0.2 11443675 chr3R 20282245 intron cic + chr3R 26004082 intergenic CR45038 + chr3R 31725920 intron ttk + chr3R_5_26000001 chr3R_26000001 RAL-303_100b 4289 chr3R 20282250 20282308 chr3R 20282351 20282409 46 100 3.5 10.0 6.8 5.9 159 chr3R 20282250 intron cic + chr3R 20282330 intron cic + chr3R 20282409 intron cic + chr3R_46_20280001 chr3R_20280001 RAL-303_100b 4290 chr3R 20308162 20308219 chr3R 20308275 20308338 26 117 14.0 0.0 7.0 3.2 176 chr3R 20308162 intergenic not near genes chr3R 20308250 intergenic not near genes chr3R 20308338 intergenic not near genes chr3R_26_20305001 chr3R_20305001 RAL-303_100b 4291 chr3R 20330973 20330979 chr3R 20331484 20331490 roo 4 511 26.0 7.0 16.5 0.2 517 chr3R 20330973 intergenic Sirt2 + chr3R 20331232 intergenic Sirt2 + chr3R 20331490 intergenic not near genes chr3R_4_20330001 chr3R_20330001 RAL-303_100b 4292 chr3R 20330980 20331028 chr3R 20331483 20331539 roo 38 509 9.0 6.5 7.8 4.3 559 chr3R 20330980 intergenic Sirt2 + chr3R 20331260 intergenic Sirt2 + chr3R 20331539 intergenic not near genes chr3R_38_20330001 chr3R_20330001 RAL-303_100b 4293 chr3R 20450132 20450143 chr3R 20450242 20450253 7 110 0.0 15.0 7.5 0.8 121 chr3R 20450132 intron Gfrl - chr3R 20450192 intron Gfrl - chr3R 20450253 intron Gfrl - chr3R_7_20450001 chr3R_20450001 RAL-303_100b 4294 chr3R 20467063 20467083 chr3R 20467162 20467178 8 100 32.0 15.5 23.8 0.3 115 chr3R 20467063 intron Gfrl - chr3R 20467120 intron Gfrl - chr3R 20467178 intron Gfrl - chr3R_8_20465001 chr3R_20465001 RAL-303_100b 4295 chr3R 20467089 20467115 chr3R 20467150 20467201 28 82 15.0 11.5 13.2 2.0 112 chr3R 20467089 intron Gfrl - chr3R 20467145 intron Gfrl - chr3R 20467201 intron Gfrl - chr3R_28_20465001 chr3R_20465001 RAL-303_100b 4296 chr3R 20512320 20512369 chr3R 20512428 20512477 46 102 11.0 11.0 11.0 3.8 157 chr3R 20512320 intron CG4288 - chr3R 20512398 5` UTR CG4288 - chr3R 20512477 intergenic CG4288 - chr3R_46_20510001 chr3R_20510001 RAL-303_100b 4297 chr3R 20512988 20513033 chr3R 20515706 20515761 opus 14 2724 12.5 6.0 9.2 1.4 2773 chr3R 20512988 intergenic not near genes chr3R 20514374 intergenic not near genes chr3R 20515761 intergenic not near genes chr3R_14_20510001 chr3R_20510001 RAL-303_100b 4298 chr3R 4475345 4475349 chr3R 20516623 20516627 micropia 4 16041278 62.0 51.5 56.8 0.1 16041282 chr3R 4475345 intron CG31523 - chr3R 12495986 intergenic not near genes chr3R 20516627 intergenic not near genes chr3R_4_12495001 chr3R_12495001 RAL-303_100b 4299 chr3R 20594462 20594473 chr3R 20594577 20594579 6 112 18.0 0.5 9.2 0.6 117 chr3R 20594462 intron bon + chr3R 20594520 intron bon + chr3R 20594579 intron bon + chr3R_6_20590001 chr3R_20590001 RAL-303_100b 4300 chr3R 20594479 20594505 chr3R 20594575 20594616 13 112 11.5 0.5 6.0 1.9 137 chr3R 20594479 intron bon + chr3R 20594548 intron bon + chr3R 20594616 intron bon + chr3R_13_20590001 chr3R_20590001 RAL-303_100b 4301 chr3R 20596166 20596214 chr3R 20596278 20596326 38 111 13.0 21.5 17.2 2.1 160 chr3R 20596166 intron bon + chr3R 20596246 intron bon + chr3R 20596326 intron bon + chr3R_38_20595001 chr3R_20595001 RAL-303_100b 4302 chr3R 20601844 20601848 chr3R 20601952 20601956 5 108 46.5 5.0 25.8 0.2 112 chr3R 20601844 intron bon + chr3R 20601900 intron bon + chr3R 20601956 intron bon + chr3R_5_20600001 chr3R_20600001 RAL-303_100b 4303 chr3R 20617499 20617520 chr3R 20617770 20617814 7 289 8.0 12.5 10.2 0.6 315 chr3R 20617499 intergenic CG5466 + chr3R 20617656 intergenic CG5466 + chr3R 20617814 intergenic CG5466 + chr3R_7_20615001 chr3R_20615001 RAL-303_100b 4304 chr3R 20717080 20717091 chr3R 20717188 20717199 6 108 29.5 26.0 27.8 0.2 119 chr3R 20717080 intergenic not near genes chr3R 20717140 intergenic not near genes chr3R 20717199 intergenic not near genes chr3R_6_20715001 chr3R_20715001 RAL-303_100b 4305 chr3R 20717096 20717103 chr3R 20717184 20717202 6 98 26.5 25.5 26.0 0.2 106 chr3R 20717096 intergenic not near genes chr3R 20717149 intergenic not near genes chr3R 20717202 intergenic not near genes chr3R_6_20715001 chr3R_20715001 RAL-303_100b 4306 chr3R 20722833 20722883 chr3R 20722985 20723035 12 147 42.0 42.0 42.0 0.3 202 chr3R 20722833 intergenic not near genes chr3R 20722934 intergenic not near genes chr3R 20723035 intergenic not near genes chr3R_12_20720001 chr3R_20720001 RAL-303_100b 4307 chr3R 20730903 20731060 chr3R 20731028 20731173 54 117 0.0 0.0 0.0 54.0 270 chr3R 20730903 intergenic not near genes chr3R 20731038 intergenic not near genes chr3R 20731173 intergenic CG31205 + chr3R_54_20730001 chr3R_20730001 RAL-303_100b 4308 chr3R 20771703 20771730 chr3R 20771800 20771836 17 93 14.0 39.5 26.8 0.6 133 chr3R 20771703 intron,intron Syp +,Takl1 - chr3R 20771770 intron,intron Syp +,Takl1 - chr3R 20771836 intron,exon Syp +,Takl1 - chr3R_17_20770001 chr3R_20770001 RAL-303_100b 4309 chr3R 20787414 20787458 chr3R 20787530 20787574 38 114 13.5 15.0 14.2 2.5 160 chr3R 20787414 intron Syp + chr3R 20787494 intron Syp + chr3R 20787574 intron Syp + chr3R_38_20785001 chr3R_20785001 RAL-303_100b 4310 chr3R 20835276 20835321 chr3R 20835427 20835482 23 159 48.0 52.5 50.2 0.4 206 chr3R 20835276 exon Synd + chr3R 20835379 intron Synd + chr3R 20835482 intron Synd + chr3R_23_20835001 chr3R_20835001 RAL-303_100b 4311 chr3R 20854465 20854491 chr3R 20859270 20859306 Doc 12 4810 20.0 10.5 15.2 0.7 4841 chr3R 20854465 intron Ir93a - chr3R 20856886 intron Ir93a - chr3R 20859306 exon Ir93a - chr3R_12_20855001 chr3R_20855001 RAL-303_100b 4312 chr3R 20854496 20854517 chr3R 20859269 20859285 Doc 11 4786 15.0 10.5 12.8 0.8 4789 chr3R 20854496 intron Ir93a - chr3R 20856890 intron Ir93a - chr3R 20859285 exon Ir93a - chr3R_11_20855001 chr3R_20855001 RAL-303_100b 4313 chr3R 20870225 20870284 chr3R 20870335 20870394 36 105 55.0 60.0 57.5 0.6 169 chr3R 20870225 intergenic not near genes chr3R 20870310 intergenic not near genes chr3R 20870394 intergenic not near genes chr3R_36_20870001 chr3R_20870001 RAL-303_100b 4314 chr3R 20874507 20874542 chr3R 20874607 20874652 15 109 39.5 36.5 38.0 0.4 145 chr3R 20874507 3` UTR TotB + chr3R 20874580 intergenic TotB + chr3R 20874652 intergenic TotB + chr3R_15_20870001 chr3R_20870001 RAL-303_100b 4315 chr3R 20899893 20899939 chr3R 20900014 20900060 14 120 5.0 7.0 6.0 2.0 167 chr3R 20899893 intergenic not near genes chr3R 20899976 intergenic not near genes chr3R 20900060 intergenic not near genes chr3R_14_20895001 chr3R_20895001 RAL-303_100b 4316 chr3R 20900513 20900573 chr3R 20900619 20900679 22 106 8.5 6.0 7.2 2.7 166 chr3R 20900513 intergenic not near genes chr3R 20900596 intergenic not near genes chr3R 20900679 intergenic not near genes chr3R_22_20900001 chr3R_20900001 RAL-303_100b 4317 chr3R 20901339 20901374 chr3R 20901439 20901480 4 98 61.5 68.5 65.0 0.1 141 chr3R 20901339 intergenic not near genes chr3R 20901410 intergenic not near genes chr3R 20901480 intergenic CG5621 + chr3R_4_20900001 chr3R_20900001 RAL-303_100b 4318 chr3R 20901629 20901686 chr3R 20901757 20901814 22 127 43.5 48.0 45.8 0.5 185 chr3R 20901629 intergenic CG5621 + chr3R 20901722 intergenic CG5621 + chr3R 20901814 intergenic CG5621 + chr3R_22_20900001 chr3R_20900001 RAL-303_100b 4319 chr3R 20942799 20942840 chr3R 20942890 20942895 21 95 37.5 38.0 37.8 0.5 96 chr3R 20942799 intron CG31191 - chr3R 20942847 intron CG31191 - chr3R 20942895 intron CG31191 - chr3R_21_20940001 chr3R_20940001 RAL-303_100b 4320 chr3R 20990703 20990724 chr3R 20990810 20990829 5 106 71.0 65.5 68.2 0.1 126 chr3R 20990703 intron Calx + chr3R 20990766 intron Calx + chr3R 20990829 intron Calx + chr3R_5_20990001 chr3R_20990001 RAL-303_100b 4321 chr3R 21013991 21014041 chr3R 21014094 21014144 24 102 49.0 46.5 47.8 0.5 153 chr3R 21013991 3` UTR Calx + chr3R 21014068 3` UTR Calx + chr3R 21014144 3` UTR Calx + chr3R_24_21010001 chr3R_21010001 RAL-303_100b 4322 chr3R 21020373 21020433 chr3R 21020474 21020524 34 98 34.0 32.5 33.2 1.0 151 chr3R 21020373 3` UTR Rlip + chr3R 21020448 3` UTR Rlip + chr3R 21020524 3` UTR Rlip + chr3R_34_21020001 chr3R_21020001 RAL-303_100b 4323 chr3R 21108020 21108051 chr3R 21108301 21108337 16 285 34.5 24.0 29.2 0.5 317 chr3R 21108020 intergenic Sec15 -,rtet + chr3R 21108178 intergenic Sec15 -,rtet + chr3R 21108337 intergenic rtet +,Sec15 - chr3R_16_21105001 chr3R_21105001 RAL-303_100b 4324 chr3R 21132606 21132649 chr3R 21132714 21132757 18 106 12.5 0.0 6.2 2.5 151 chr3R 21132606 3` UTR Ice2 + chr3R 21132682 3` UTR Ice2 + chr3R 21132757 exon CG7009 - chr3R_18_21130001 chr3R_21130001 RAL-303_100b 4325 chr3R 21141652 21141663 chr3R 21150158 21150169 Tirant 8 8506 40.5 16.5 28.5 0.3 8517 chr3R 21141652 intron SNF4Agamma + chr3R 21145910 intron SNF4Agamma + chr3R 21150169 intron SNF4Agamma + chr3R_8_21145001 chr3R_21145001 RAL-303_100b 4326 chr3R 21141664 21141706 chr3R 21150154 21150210 Tirant 40 8499 21.0 12.5 16.8 2.2 8546 chr3R 21141664 intron SNF4Agamma + chr3R 21145937 intron SNF4Agamma + chr3R 21150210 intron SNF4Agamma + chr3R_40_21145001 chr3R_21145001 RAL-303_100b 4327 chr3R 21154547 21154580 chr3R 21154787 21154820 9 238 55.5 46.0 50.8 0.2 273 chr3R 21154547 intron SNF4Agamma + chr3R 21154684 intron SNF4Agamma + chr3R 21154820 intron SNF4Agamma + chr3R_9_21150001 chr3R_21150001 RAL-303_100b 4328 chr3R 21163249 21163275 chr3R 21163347 21163369 19 100 19.5 29.0 24.2 0.8 120 chr3R 21163249 intron SNF4Agamma + chr3R 21163309 intron SNF4Agamma + chr3R 21163369 intron SNF4Agamma + chr3R_19_21160001 chr3R_21160001 RAL-303_100b 4329 chr3R 21183241 21183262 chr3R 21183337 21183365 11 100 9.0 32.0 20.5 0.5 124 chr3R 21183241 intron SNF4Agamma + chr3R 21183303 intron SNF4Agamma + chr3R 21183365 intron SNF4Agamma + chr3R_11_21180001 chr3R_21180001 RAL-303_100b 4330 chr3R 21214720 21214748 chr3R 21214917 21214945 18 196 17.5 16.5 17.0 1.0 225 chr3R 21214720 intergenic CG5862 + chr3R 21214832 intergenic CG5862 + chr3R 21214945 intergenic CG5862 + chr3R_18_21210001 chr3R_21210001 RAL-303_100b 4331 chr3R 21239819 21239821 chr3R 27980098 27980100 4 6740279 22.5 63.0 42.8 0.1 6740281 chr3R 21239819 intergenic not near genes chr3R 24609960 intron mld + chr3R 27980100 intron betaTub97EF - chr3R_4_24605001 chr3R_24605001 RAL-303_100b 4332 chr3R 21240425 21240475 chr3R 21240542 21240592 23 115 39.5 43.5 41.5 0.5 167 chr3R 21240425 intergenic not near genes chr3R 21240508 intergenic not near genes chr3R 21240592 intergenic not near genes chr3R_23_21240001 chr3R_21240001 RAL-303_100b 4333 chr3R 21245828 21245866 chr3R 21245937 21245975 12 109 38.5 35.0 36.8 0.3 147 chr3R 21245828 intergenic CG5892 + chr3R 21245902 intergenic CG5892 + chr3R 21245975 intergenic not near genes chr3R_12_21245001 chr3R_21245001 RAL-303_100b 4334 chr3R 21248510 21248567 chr3R 21248632 21248674 15 118 45.5 45.0 45.2 0.3 164 chr3R 21248510 intron ETHR + chr3R 21248592 intron ETHR + chr3R 21248674 intron ETHR + chr3R_15_21245001 chr3R_21245001 RAL-303_100b 4335 chr3R 21265461 21265513 chr3R 21265720 21265772 11 259 30.0 36.0 33.0 0.3 311 chr3R 21265461 intergenic ETHR + chr3R 21265616 intergenic Rab1 -,ETHR + chr3R 21265772 intergenic Rab1 - chr3R_11_21265001 chr3R_21265001 RAL-303_100b 4336 chr3R 21274351 21274357 chr3R 21274470 21274476 6 119 50.0 40.0 45.0 0.1 125 chr3R 21274351 3` UTR CG3301 - chr3R 21274414 3` UTR CG3301 - chr3R 21274476 intron CG3301 - chr3R_6_21270001 chr3R_21270001 RAL-303_100b 4337 chr3R 21274359 21274645 chr3R 21274466 21274751 43 114 43.5 40.0 41.8 1.0 392 chr3R 21274359 3` UTR CG3301 - chr3R 21274555 3` UTR CG3301 - chr3R 21274751 intron CG3301 - chr3R_43_21270001 chr3R_21270001 RAL-303_100b 4338 chr3R 21322954 21323004 chr3R 21323053 21323111 16 102 41.5 35.5 38.5 0.4 157 chr3R 21322954 exon CG16791 - chr3R 21323032 intron CG16791 - chr3R 21323111 intron CG16791 - chr3R_16_21320001 chr3R_21320001 RAL-303_100b 4339 chr3R 21385669 21385955 chr3R 21385776 21386057 20 103 28.5 40.5 34.5 0.6 388 chr3R 21385669 intergenic not near genes chr3R 21385863 intergenic not near genes chr3R 21386057 intergenic not near genes chr3R_20_21385001 chr3R_21385001 RAL-303_100b 4340 chr3R 21393435 21393481 chr3R 21393576 21393609 7 137 48.0 38.5 43.2 0.2 174 chr3R 21393435 intergenic not near genes chr3R 21393522 intergenic not near genes chr3R 21393609 intergenic not near genes chr3R_7_21390001 chr3R_21390001 RAL-303_100b 4341 chr3R 21462842 21462888 chr3R 21463082 21463115 14 238 55.5 30.0 42.8 0.3 273 chr3R 21462842 intergenic not near genes chr3R 21462978 intergenic not near genes chr3R 21463115 intergenic not near genes chr3R_14_21460001 chr3R_21460001 RAL-303_100b 4342 chr3R 21464385 21464419 chr3R 21464496 21464530 17 109 7.0 6.0 6.5 2.3 145 chr3R 21464385 intergenic not near genes chr3R 21464458 intergenic not near genes chr3R 21464530 intergenic not near genes chr3R_17_21460001 chr3R_21460001 RAL-303_100b 4343 chr3R 21471993 21472010 chr3R 21472099 21472116 16 106 36.0 22.5 29.2 0.5 123 chr3R 21471993 intergenic not near genes chr3R 21472054 intergenic not near genes chr3R 21472116 intergenic not near genes chr3R_16_21470001 chr3R_21470001 RAL-303_100b 4344 chr3R 21472012 21472024 chr3R 21472096 21472130 10 102 27.0 21.5 24.2 0.4 118 chr3R 21472012 intergenic not near genes chr3R 21472071 intergenic not near genes chr3R 21472130 intergenic not near genes chr3R_10_21470001 chr3R_21470001 RAL-303_100b 4345 chr3R 21472025 21472030 chr3R 21472095 21472103 8 97 22.5 21.5 22.0 0.3 78 chr3R 21472025 intergenic not near genes chr3R 21472064 intergenic not near genes chr3R 21472103 intergenic not near genes chr3R_8_21470001 chr3R_21470001 RAL-303_100b 4346 chr3R 21475971 21476021 chr3R 21476084 21476128 12 107 54.5 56.5 55.5 0.2 157 chr3R 21475971 intergenic not near genes chr3R 21476050 intergenic not near genes chr3R 21476128 intergenic not near genes chr3R_12_21475001 chr3R_21475001 RAL-303_100b 4347 chr3R 21494655 21494717 chr3R 21494760 21494822 27 103 32.0 36.0 34.0 0.8 167 chr3R 21494655 intergenic not near genes chr3R 21494738 intergenic not near genes chr3R 21494822 intergenic not near genes chr3R_27_21490001 chr3R_21490001 RAL-303_100b 4348 chr3R 21518253 21518262 chr3R 21518362 21518370 11 108 13.0 41.5 27.2 0.4 117 chr3R 21518253 intergenic not near genes chr3R 21518312 intergenic not near genes chr3R 21518370 intergenic not near genes chr3R_11_21515001 chr3R_21515001 RAL-303_100b 4349 chr3R 21518263 21518272 chr3R 21518342 21518378 11 104 15.0 33.5 24.2 0.4 115 chr3R 21518263 intergenic not near genes chr3R 21518320 intergenic not near genes chr3R 21518378 intergenic not near genes chr3R_11_21515001 chr3R_21515001 RAL-303_100b 4350 chr3R 21519965 21520137 chr3R 21520087 21520256 44 121 21.0 23.0 22.0 1.9 291 chr3R 21519965 intergenic not near genes chr3R 21520110 intergenic not near genes chr3R 21520256 intergenic not near genes chr3R_44_21520001 chr3R_21520001 RAL-303_100b 4351 chr3R 21540205 21540263 chr3R 21540435 21540493 18 228 46.5 46.0 46.2 0.4 288 chr3R 21540205 intergenic not near genes chr3R 21540349 intergenic not near genes chr3R 21540493 intergenic not near genes chr3R_18_21540001 chr3R_21540001 RAL-303_100b 4352 chr3R 21545594 21545627 chr3R 21545681 21545729 9 92 34.5 35.5 35.0 0.2 135 chr3R 21545594 intergenic not near genes chr3R 21545662 intergenic not near genes chr3R 21545729 intergenic not near genes chr3R_9_21545001 chr3R_21545001 RAL-303_100b 4353 chr3R 21554815 21554846 chr3R 21554934 21554965 4 119 52.0 52.0 52.0 0.1 150 chr3R 21554815 intron slou - chr3R 21554890 intron slou - chr3R 21554965 intron slou - chr3R_4_21550001 chr3R_21550001 RAL-303_100b 4354 chr3R 21569817 21569860 chr3R 21569918 21569965 9 103 46.0 41.0 43.5 0.2 148 chr3R 21569817 intergenic InR - chr3R 21569891 intergenic InR - chr3R 21569965 intergenic InR - chr3R_9_21565001 chr3R_21565001 RAL-303_100b 4355 chr3R 21583004 21583017 chr3R 21583099 21583121 5 105 61.0 60.0 60.5 0.1 117 chr3R 21583004 intron InR - chr3R 21583062 intron InR - chr3R 21583121 intron InR - chr3R_5_21580001 chr3R_21580001 RAL-303_100b 4356 chr3R 21662337 21662371 chr3R 21662438 21662472 11 101 0.0 0.0 0.0 11.0 135 chr3R 21662337 intron CG6353 - chr3R 21662404 intron CG6353 - chr3R 21662472 intron CG6353 - chr3R_11_21660001 chr3R_21660001 RAL-303_100b 4357 chr3R 21725673 21725686 chr3R 21725834 21725847 6 161 10.0 33.0 21.5 0.3 174 chr3R 21725673 intergenic not near genes chr3R 21725760 intergenic not near genes chr3R 21725847 intergenic not near genes chr3R_6_21725001 chr3R_21725001 RAL-303_100b 4358 chr3R 21734844 21734855 chr3R 21734945 21734956 4 101 67.0 44.0 55.5 0.1 112 chr3R 21734844 intergenic not near genes chr3R 21734900 intergenic not near genes chr3R 21734956 intergenic not near genes chr3R_4_21730001 chr3R_21730001 RAL-303_100b 4359 chr3R 21751138 21751164 chr3R 21753909 21753960 16 2776 93.0 98.5 95.8 0.2 2822 chr3R 21751138 exon CG31233 + chr3R 21752549 exon CG31233 + chr3R 21753960 intergenic CG31198 + chr3R_16_21750001 chr3R_21750001 RAL-303_100b 4360 chr3R 21759030 21759064 chr3R 21759142 21759192 18 122 28.5 35.5 32.0 0.5 162 chr3R 21759030 exon CG42335 + chr3R 21759111 exon CG42335 + chr3R 21759192 exon CG42335 + chr3R_18_21755001 chr3R_21755001 RAL-303_100b 4361 chr3R 21759858 21759912 chr3R 21759993 21760027 12 125 61.0 69.0 65.0 0.2 169 chr3R 21759858 exon CG42335 + chr3R 21759942 exon CG42335 + chr3R 21760027 exon CG42335 + chr3R_12_21755001 chr3R_21755001 RAL-303_100b 4362 chr3R 21761100 21761155 chr3R 21768512 21768572 mdg1 61 7408 10.5 12.0 11.2 5.0 7472 chr3R 21761100 exon CG42335 + chr3R 21764836 intron CG42335 + chr3R 21768572 exon CG42335 + chr3R_61_21760001 chr3R_21760001 RAL-303_100b 4363 chr3R 21815233 21815251 chr3R 21815474 21815484 5 241 50.0 50.5 50.2 0.1 251 chr3R 21815233 intron CASK - chr3R 21815358 intron CASK - chr3R 21815484 intron CASK - chr3R_5_21815001 chr3R_21815001 RAL-303_100b 4364 chr3R 21815252 21815280 chr3R 21815465 21815495 9 227 46.0 49.5 47.8 0.2 243 chr3R 21815252 intron CASK - chr3R 21815374 intron CASK - chr3R 21815495 intron CASK - chr3R_9_21815001 chr3R_21815001 RAL-303_100b 4365 chr3R 21817415 21817469 chr3R 21817655 21817703 5 235 48.0 48.0 48.0 0.1 288 chr3R 21817415 exon CASK - chr3R 21817559 intron CASK - chr3R 21817703 intron CASK - chr3R_5_21815001 chr3R_21815001 RAL-303_100b 4366 chr3R 21858834 21858883 chr3R 21858954 21859003 19 119 65.5 67.0 66.2 0.3 169 chr3R 21858834 intergenic not near genes chr3R 21858918 intergenic not near genes chr3R 21859003 intergenic not near genes chr3R_19_21855001 chr3R_21855001 RAL-303_100b 4367 chr3R 21871259 21871307 chr3R 21871373 21871421 7 114 50.0 49.0 49.5 0.1 162 chr3R 21871259 intron CG31431 + chr3R 21871340 intron CG31431 + chr3R 21871421 intron CG31431 + chr3R_7_21870001 chr3R_21870001 RAL-303_100b 4368 chr3R 21883955 21883966 chr3R 21884048 21884068 5 101 42.5 56.0 49.2 0.1 113 chr3R 21883955 intron,3` UTR,3` UTR CR45046 -,CG31465 +,fit - chr3R 21884012 intron,3` UTR CR45046 -,fit - chr3R 21884068 intron,exon CR45046 -,fit - chr3R_5_21880001 chr3R_21880001 RAL-303_100b 4369 chr3R 21903509 21903635 chr3R 21903614 21903752 17 119 0.0 0.0 0.0 17.0 243 chr3R 21903509 intron CG6678 + chr3R 21903630 intron CG6678 + chr3R 21903752 intron CG6678 + chr3R_17_21900001 chr3R_21900001 RAL-303_100b 4370 chr3R 8339246 8339247 chr3R 21907534 21907534 18 13568288 84.5 74.0 79.2 0.2 13568288 chr3R 8339246 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907534 intergenic CG6678 + chr3R_18_15120001 chr3R_15120001 RAL-303_100b 4371 chr3R 9620954 9620957 chr3R 21907534 21907534 10 12286578 40.0 74.0 57.0 0.2 12286580 chr3R 9620954 intron CG8312 + chr3R 15764244 intergenic not near genes chr3R 21907534 intergenic CG6678 + chr3R_10_15760001 chr3R_15760001 RAL-303_100b 4372 chr3R 17389054 17389054 chr3R 21907534 21907534 4 4518480 36.0 74.0 55.0 0.1 4518480 chr3R 17389054 intron,3` UTR Brf -,lute + chr3R 19648294 5` UTR CG6195 - chr3R 21907534 intergenic CG6678 + chr3R_4_19645001 chr3R_19645001 RAL-303_100b 4373 chr3R 21907534 21907534 chr3R 28831801 28831820 58 6924268 77.5 86.0 81.8 0.7 6924286 chr3R 21907534 intergenic CG6678 + chr3R 25369677 intron Fur1 - chr3R 28831820 5` UTR WASp - chr3R_58_25365001 chr3R_25365001 RAL-303_100b 4374 chr3R 8339247 8339247 chr3R 21907535 21907535 9 13568288 84.5 74.0 79.2 0.1 13568288 chr3R 8339247 intergenic not near genes chr3R 15123391 intron CG42788 - chr3R 21907535 intergenic CG6678 + chr3R_9_15120001 chr3R_15120001 RAL-303_100b 4375 chr3R 9620955 9620957 chr3R 21907535 21907535 16 12286579 40.0 74.0 57.0 0.3 12286580 chr3R 9620955 intron CG8312 + chr3R 15764245 intergenic not near genes chr3R 21907535 intergenic CG6678 + chr3R_16_15760001 chr3R_15760001 RAL-303_100b 4376 chr3R 21907535 21907535 chr3R 28831801 28831821 95 6924266 77.5 86.0 81.8 1.1 6924286 chr3R 21907535 intergenic CG6678 + chr3R 25369678 intron Fur1 - chr3R 28831821 5` UTR WASp - chr3R_95_25365001 chr3R_25365001 RAL-303_100b 4377 chr3R 9620956 9620957 chr3R 21907536 21907536 6 12286580 40.0 74.0 57.0 0.1 12286580 chr3R 9620956 intron CG8312 + chr3R 15764246 intergenic not near genes chr3R 21907536 intergenic CG6678 + chr3R_6_15760001 chr3R_15760001 RAL-303_100b 4378 chr3R 21907536 21907536 chr3R 28831801 28831802 109 6924266 78.5 86.0 82.2 1.3 6924266 chr3R 21907536 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831802 intron WASp - chr3R_109_25365001 chr3R_25365001 RAL-303_100b 4379 chr3R 21919000 21919015 chr3R 21919102 21919110 10 104 2.5 25.5 14.0 0.7 110 chr3R 21919000 intergenic not near genes chr3R 21919055 intergenic not near genes chr3R 21919110 intergenic not near genes chr3R_10_21915001 chr3R_21915001 RAL-303_100b 4380 chr3R 21923999 21924046 chr3R 21924100 21924161 11 108 42.0 34.5 38.2 0.3 162 chr3R 21923999 intergenic not near genes chr3R 21924080 intergenic not near genes chr3R 21924161 intergenic not near genes chr3R_11_21920001 chr3R_21920001 RAL-303_100b 4381 chr3R 21937204 21937234 chr3R 21937306 21937336 18 101 16.5 19.0 17.8 1.0 132 chr3R 21937204 intergenic not near genes chr3R 21937270 intergenic not near genes chr3R 21937336 intergenic not near genes chr3R_18_21935001 chr3R_21935001 RAL-303_100b 4382 chr3R 21938046 21938077 chr3R 21938224 21938260 10 182 7.5 16.0 11.8 0.8 214 chr3R 21938046 intergenic not near genes chr3R 21938153 intergenic not near genes chr3R 21938260 intergenic not near genes chr3R_10_21935001 chr3R_21935001 RAL-303_100b 4383 chr3R 21952117 21952162 chr3R 21952227 21952272 11 110 51.0 58.0 54.5 0.2 155 chr3R 21952117 intron Eip93F + chr3R 21952194 intron Eip93F + chr3R 21952272 intron Eip93F + chr3R_11_21950001 chr3R_21950001 RAL-303_100b 4384 chr3R 21983111 21983162 chr3R 21983217 21983243 13 102 47.5 44.5 46.0 0.3 132 chr3R 21983111 intron Eip93F + chr3R 21983177 intron Eip93F + chr3R 21983243 intron Eip93F + chr3R_13_21980001 chr3R_21980001 RAL-303_100b 4385 chr3R 21985208 21985246 chr3R 21985334 21985376 15 130 22.5 16.0 19.2 0.7 168 chr3R 21985208 intron Eip93F + chr3R 21985292 intron Eip93F + chr3R 21985376 intron Eip93F + chr3R_15_21985001 chr3R_21985001 RAL-303_100b 4386 chr3R 22055535 22055588 chr3R 22055749 22055791 16 206 25.5 43.5 34.5 0.5 256 chr3R 22055535 intron how + chr3R 22055663 intron how + chr3R 22055791 intron how + chr3R_16_22055001 chr3R_22055001 RAL-303_100b 4387 chr3R 22074877 22074890 chr3R 22082935 22082978 21 8056 83.5 100.0 91.8 0.2 8101 chr3R 22074877 3` UTR how + chr3R 22078928 3` UTR how + chr3R 22082978 exon CG13408 + chr3R_21_22075001 chr3R_22075001 RAL-303_100b 4388 chr3R 22084608 22084625 chr3R 22084712 22084739 17 113 1.5 20.5 11.0 1.4 131 chr3R 22084608 intergenic not near genes chr3R 22084674 intergenic not near genes chr3R 22084739 intergenic not near genes chr3R_17_22080001 chr3R_22080001 RAL-303_100b 4389 chr3R 22108324 22108390 chr3R 22108584 22108638 48 249 30.5 37.0 33.8 1.4 314 chr3R 22108324 intron CG5778 - chr3R 22108481 intron CG5778 - chr3R 22108638 intron CG5778 - chr3R_48_22105001 chr3R_22105001 RAL-303_100b 4390 chr3R 22137580 22137625 chr3R 22137820 22137865 8 240 48.0 51.5 49.8 0.2 285 chr3R 22137580 intron SKIP + chr3R 22137722 intron SKIP + chr3R 22137865 intron SKIP + chr3R_8_22135001 chr3R_22135001 RAL-303_100b 4391 chr3R 22142191 22142222 chr3R 22142294 22142315 10 102 46.5 47.5 47.0 0.2 124 chr3R 22142191 5` UTR SKIP + chr3R 22142253 intron SKIP + chr3R 22142315 intron SKIP + chr3R_10_22140001 chr3R_22140001 RAL-303_100b 4392 chr3R 22159469 22159523 chr3R 22159578 22159630 15 107 47.0 52.5 49.8 0.3 161 chr3R 22159469 intron SKIP + chr3R 22159550 intron SKIP + chr3R 22159630 intron SKIP + chr3R_15_22155001 chr3R_22155001 RAL-303_100b 4393 chr3R 22192610 22192651 chr3R 22192873 22192915 12 262 59.5 64.5 62.0 0.2 305 chr3R 22192610 intron SKIP + chr3R 22192762 intron SKIP + chr3R 22192915 intron SKIP + chr3R_12_22190001 chr3R_22190001 RAL-303_100b 4394 chr3R 22234061 22234097 chr3R 22234163 22234199 13 98 36.0 46.0 41.0 0.3 138 chr3R 22234061 intron SKIP + chr3R 22234130 intron SKIP + chr3R 22234199 intron SKIP + chr3R_13_22230001 chr3R_22230001 RAL-303_100b 4395 chr3R 22234663 22234715 chr3R 22236002 22236055 pogo 35 1339 23.5 30.0 26.8 1.3 1392 chr3R 22234663 intron SKIP + chr3R 22235359 intron SKIP + chr3R 22236055 intron SKIP + chr3R_35_22235001 chr3R_22235001 RAL-303_100b 4396 chr3R 22239470 22239524 chr3R 22248555 22248597 roo 30 9077 15.0 8.5 11.8 2.3 9127 chr3R 22239470 intron SKIP + chr3R 22244034 intron SKIP + chr3R 22248597 intron SKIP + chr3R_30_22240001 chr3R_22240001 RAL-303_100b 4397 chr3R 22286133 22286162 chr3R 22286235 22286264 4 102 18.0 23.5 20.8 0.2 131 chr3R 22286133 intron SKIP + chr3R 22286198 intron SKIP + chr3R 22286264 intron SKIP + chr3R_4_22285001 chr3R_22285001 RAL-303_100b 4398 chr3R 22347852 22347888 chr3R 22347955 22347991 13 103 52.5 60.0 56.2 0.2 139 chr3R 22347852 intergenic not near genes chr3R 22347922 intergenic not near genes chr3R 22347991 intergenic not near genes chr3R_13_22345001 chr3R_22345001 RAL-303_100b 4399 chr3R 22348493 22348536 chr3R 22349262 22349305 14 769 34.0 21.5 27.8 0.5 812 chr3R 22348493 intergenic not near genes chr3R 22348899 intergenic not near genes chr3R 22349305 intergenic not near genes chr3R_14_22345001 chr3R_22345001 RAL-303_100b 4400 chr3R 22349285 22349302 chr3R 22349413 22349436 5 131 33.5 47.0 40.2 0.1 151 chr3R 22349285 intergenic not near genes chr3R 22349360 intergenic not near genes chr3R 22349436 intergenic not near genes chr3R_5_22345001 chr3R_22345001 RAL-303_100b 4401 chr3R 22350002 22350030 chr3R 22350184 22350200 4 179 43.0 35.5 39.2 0.1 198 chr3R 22350002 intergenic not near genes chr3R 22350101 intergenic not near genes chr3R 22350200 intergenic not near genes chr3R_4_22350001 chr3R_22350001 RAL-303_100b 4402 chr3R 22421642 22421697 chr3R 22421750 22421805 28 106 33.5 28.5 31.0 0.9 163 chr3R 22421642 intron mats + chr3R 22421724 intron mats + chr3R 22421805 intron mats + chr3R_28_22420001 chr3R_22420001 RAL-303_100b 4403 chr3R 22428552 22428609 chr3R 22428653 22428684 34 95 42.0 38.5 40.2 0.8 132 chr3R 22428552 intron CG13847 - chr3R 22428618 intron CG13847 - chr3R 22428684 intron CG13847 - chr3R_34_22425001 chr3R_22425001 RAL-303_100b 4404 chr3R 22433068 22433115 chr3R 22433192 22433239 29 123 22.0 19.5 20.8 1.3 171 chr3R 22433068 intron CG13847 - chr3R 22433154 intron CG13847 - chr3R 22433239 intron CG13847 - chr3R_29_22430001 chr3R_22430001 RAL-303_100b 4405 chr3R 22450520 22450546 chr3R 22453185 22453211 NOF 21 2664 31.0 23.0 27.0 0.8 2691 chr3R 22450520 intron CG34376 + chr3R 22451866 intron CG34376 + chr3R 22453211 intron CG34376 + chr3R_21_22450001 chr3R_22450001 RAL-303_100b 4406 chr3R 22450547 22450579 chr3R 22453182 22453184 NOF 37 2660 9.0 21.0 15.0 2.3 2637 chr3R 22450547 intron CG34376 + chr3R 22451866 intron CG34376 + chr3R 22453184 intron CG34376 + chr3R_37_22450001 chr3R_22450001 RAL-303_100b 4407 chr3R 22499829 22499839 chr3R 22499905 22499917 10 90 22.5 40.0 31.2 0.3 88 chr3R 22499829 intron Octbeta1R + chr3R 22499873 intron Octbeta1R + chr3R 22499917 intron Octbeta1R + chr3R_10_22495001 chr3R_22495001 RAL-303_100b 4408 chr3R 22619816 22619856 chr3R 22620028 22620068 12 212 27.0 47.0 37.0 0.3 252 chr3R 22619816 3` UTR mRpL45 + chr3R 22619942 intergenic loco -,mRpL45 + chr3R 22620068 3` UTR loco - chr3R_12_22615001 chr3R_22615001 RAL-303_100b 4409 chr3R 22672276 22672332 chr3R 22672394 22672435 31 116 26.0 25.5 25.8 1.2 159 chr3R 22672276 intron wake + chr3R 22672356 intron wake + chr3R 22672435 intron wake + chr3R_31_22670001 chr3R_22670001 RAL-303_100b 4410 chr3R 22673683 22673723 chr3R 22673803 22673843 12 116 64.5 64.0 64.2 0.2 160 chr3R 22673683 intron wake + chr3R 22673763 intron wake + chr3R 22673843 intron wake + chr3R_12_22670001 chr3R_22670001 RAL-303_100b 4411 chr3R 22769068 22769126 chr3R 22769170 22769228 66 97 20.0 22.5 21.2 3.0 160 chr3R 22769068 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769148 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769228 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R_66_22765001 chr3R_22765001 RAL-303_100b 4412 chr3R 22777013 22777060 chr3R 22777118 22777165 12 105 14.5 17.5 16.0 0.7 152 chr3R 22777013 intron CG7029 + chr3R 22777089 intron CG7029 + chr3R 22777165 intron CG7029 + chr3R_12_22775001 chr3R_22775001 RAL-303_100b 4413 chr3R 22777988 22777995 chr3R 22778218 22778227 4 232 51.5 56.5 54.0 0.1 239 chr3R 22777988 intron,3` UTR CG7029 +,CR43654 - chr3R 22778108 intron,3` UTR CG7029 +,CR43654 - chr3R 22778227 intron,3` UTR CG7029 +,CR43654 - chr3R_4_22775001 chr3R_22775001 RAL-303_100b 4414 chr3R 22792243 22792297 chr3R 22792432 22792456 18 178 37.5 37.5 37.5 0.5 213 chr3R 22792243 intron CG7029 + chr3R 22792350 exon CG7029 + chr3R 22792456 exon CG7029 + chr3R_18_22790001 chr3R_22790001 RAL-303_100b 4415 chr3R 22794498 22794548 chr3R 22794599 22794649 5 99 63.0 70.0 66.5 0.1 151 chr3R 22794498 intergenic CG7029 + chr3R 22794574 intergenic not near genes chr3R 22794649 intergenic not near genes chr3R_5_22790001 chr3R_22790001 RAL-303_100b 4416 chr3R 22827976 22828028 chr3R 22828096 22828148 31 119 29.5 39.0 34.2 0.9 172 chr3R 22827976 intergenic not near genes chr3R 22828062 intergenic not near genes chr3R 22828148 intergenic not near genes chr3R_31_22825001 chr3R_22825001 RAL-303_100b 4417 chr3R 22840796 22840846 chr3R 22841283 22841312 11 483 29.0 57.5 43.2 0.2 516 chr3R 22840796 intergenic not near genes chr3R 22841054 intergenic not near genes chr3R 22841312 intergenic not near genes chr3R_11_22840001 chr3R_22840001 RAL-303_100b 4418 chr3R 22842373 22842389 chr3R 22842487 22842513 12 122 47.5 41.0 44.2 0.3 140 chr3R 22842373 intergenic not near genes chr3R 22842443 intergenic not near genes chr3R 22842513 intergenic not near genes chr3R_12_22840001 chr3R_22840001 RAL-303_100b 4419 chr3R 22842392 22842419 chr3R 22842486 22842538 17 120 40.0 40.5 40.2 0.4 146 chr3R 22842392 intergenic not near genes chr3R 22842465 intergenic not near genes chr3R 22842538 intergenic not near genes chr3R_17_22840001 chr3R_22840001 RAL-303_100b 4420 chr3R 22853267 22853298 chr3R 22853368 22853400 16 99 45.5 48.0 46.8 0.3 133 chr3R 22853267 intergenic not near genes chr3R 22853334 intergenic not near genes chr3R 22853400 intergenic not near genes chr3R_16_22850001 chr3R_22850001 RAL-303_100b 4421 chr3R 22863894 22863930 chr3R 22863997 22864033 30 102 17.5 27.5 22.5 1.3 139 chr3R 22863894 intergenic not near genes chr3R 22863964 intergenic not near genes chr3R 22864033 intergenic not near genes chr3R_30_22860001 chr3R_22860001 RAL-303_100b 4422 chr3R 22871416 22871465 chr3R 22871534 22871589 17 122 47.5 51.5 49.5 0.3 173 chr3R 22871416 intergenic not near genes chr3R 22871502 intergenic not near genes chr3R 22871589 intergenic not near genes chr3R_17_22870001 chr3R_22870001 RAL-303_100b 4423 chr3R 22877083 22877322 chr3R 22877180 22877457 10 125 44.5 35.5 40.0 0.2 374 chr3R 22877083 intergenic not near genes chr3R 22877270 intergenic not near genes chr3R 22877457 intergenic not near genes chr3R_10_22875001 chr3R_22875001 RAL-303_100b 4424 chr3R 22880583 22880607 chr3R 22880685 22880692 7 97 62.0 78.0 70.0 0.1 109 chr3R 22880583 intergenic not near genes chr3R 22880638 intergenic not near genes chr3R 22880692 intergenic not near genes chr3R_7_22880001 chr3R_22880001 RAL-303_100b 4425 chr3R 22880914 22880957 chr3R 22881077 22881120 9 163 37.5 40.5 39.0 0.2 206 chr3R 22880914 intergenic not near genes chr3R 22881017 intergenic not near genes chr3R 22881120 intergenic not near genes chr3R_9_22880001 chr3R_22880001 RAL-303_100b 4426 chr3R 22881183 22881203 chr3R 22884914 22884934 Doc 14 3731 15.5 15.0 15.2 0.9 3751 chr3R 22881183 intergenic not near genes chr3R 22883058 intergenic not near genes chr3R 22884934 intergenic not near genes chr3R_14_22880001 chr3R_22880001 RAL-303_100b 4427 chr3R 22881205 22881227 chr3R 22884899 22884942 Doc 21 3726 9.5 10.0 9.8 1.9 3737 chr3R 22881205 intergenic not near genes chr3R 22883074 intergenic not near genes chr3R 22884942 intergenic not near genes chr3R_21_22880001 chr3R_22880001 RAL-303_100b 4428 chr3R 22906615 22906642 chr3R 22906717 22906727 6 100 77.5 58.0 67.8 0.1 112 chr3R 22906615 intron klg + chr3R 22906671 intron klg + chr3R 22906727 intron klg + chr3R_6_22905001 chr3R_22905001 RAL-303_100b 4429 chr3R 22913193 22913242 chr3R 22913285 22913342 10 95 53.5 53.0 53.2 0.2 149 chr3R 22913193 intron klg + chr3R 22913268 intron klg + chr3R 22913342 intron klg + chr3R_10_22910001 chr3R_22910001 RAL-303_100b 4430 chr3R 22917965 22917979 chr3R 22918096 22918105 8 129 51.0 47.0 49.0 0.2 140 chr3R 22917965 intron klg + chr3R 22918035 intron klg + chr3R 22918105 intron klg + chr3R_8_22915001 chr3R_22915001 RAL-303_100b 4431 chr3R 22944349 22944388 chr3R 22944480 22944519 19 128 64.5 65.5 65.0 0.3 170 chr3R 22944349 intron klg + chr3R 22944434 intron klg + chr3R 22944519 intron klg + chr3R_19_22940001 chr3R_22940001 RAL-303_100b 4432 chr3R 22953802 22953852 chr3R 22954479 22954518 12 675 58.0 59.5 58.8 0.2 716 chr3R 22953802 intron klg + chr3R 22954160 intron klg + chr3R 22954518 intron klg + chr3R_12_22950001 chr3R_22950001 RAL-303_100b 4433 chr3R 22974259 22974311 chr3R 22974368 22974418 11 108 45.5 47.5 46.5 0.2 159 chr3R 22974259 intergenic not near genes chr3R 22974338 intergenic not near genes chr3R 22974418 intergenic not near genes chr3R_11_22970001 chr3R_22970001 RAL-303_100b 4434 chr3R 22993482 22993531 chr3R 22993642 22993691 16 158 57.5 57.0 57.2 0.3 209 chr3R 22993482 intron Nha2 - chr3R 22993586 intron Nha2 - chr3R 22993691 intron Nha2 - chr3R_16_22990001 chr3R_22990001 RAL-303_100b 4435 chr3R 22998568 22998619 chr3R 22998664 22998720 21 97 37.5 30.5 34.0 0.6 152 chr3R 22998568 intergenic Nha2 - chr3R 22998644 intergenic Nha2 - chr3R 22998720 intergenic Nha2 - chr3R_21_22995001 chr3R_22995001 RAL-303_100b 4436 chr3R 23000686 23000734 chr3R 23000954 23000971 16 255 31.0 35.5 33.2 0.5 285 chr3R 23000686 exon CG34375 - chr3R 23000828 exon CG34375 - chr3R 23000971 exon CG34375 - chr3R_16_23000001 chr3R_23000001 RAL-303_100b 4437 chr3R 23011350 23011353 chr3R 23011471 23011474 4 121 61.5 54.0 57.8 0.1 124 chr3R 23011350 intergenic not near genes chr3R 23011412 intergenic not near genes chr3R 23011474 intergenic CR44225 - chr3R_4_23010001 chr3R_23010001 RAL-303_100b 4438 chr3R 23011355 23011407 chr3R 23011470 23011513 26 118 60.0 54.5 57.2 0.4 158 chr3R 23011355 intergenic not near genes chr3R 23011434 intergenic CR44225 - chr3R 23011513 intergenic CR44225 - chr3R_26_23010001 chr3R_23010001 RAL-303_100b 4439 chr3R 23028865 23028906 chr3R 23029097 23029131 8 235 48.0 60.5 54.2 0.1 266 chr3R 23028865 intergenic not near genes chr3R 23028998 intergenic not near genes chr3R 23029131 intergenic not near genes chr3R_8_23025001 chr3R_23025001 RAL-303_100b 4440 chr3R 23040441 23040494 chr3R 23040545 23040598 22 99 54.5 56.5 55.5 0.4 157 chr3R 23040441 intergenic CR44226 + chr3R 23040520 intergenic CR44226 + chr3R 23040598 intergenic CR44226 + chr3R_22_23040001 chr3R_23040001 RAL-303_100b 4441 chr3R 23064151 23064156 chr3R 23064285 23064290 5 134 70.5 47.0 58.8 0.1 139 chr3R 23064151 exon CG17111 - chr3R 23064220 exon CG17111 - chr3R 23064290 exon CG17111 - chr3R_5_23060001 chr3R_23060001 RAL-303_100b 4442 chr3R 23064157 23064205 chr3R 23064281 23064339 31 129 47.5 46.5 47.0 0.6 182 chr3R 23064157 exon CG17111 - chr3R 23064248 intron CG17111 - chr3R 23064339 exon CG17111 - chr3R_31_23060001 chr3R_23060001 RAL-303_100b 4443 chr3R 23064865 23064899 chr3R 23064981 23065015 14 115 32.0 50.5 41.2 0.3 150 chr3R 23064865 intron CG17111 - chr3R 23064940 intron CG17111 - chr3R 23065015 intron CG17111 - chr3R_14_23060001 chr3R_23060001 RAL-303_100b 4444 chr3R 23070636 23070699 chr3R 23070741 23070797 8 104 2.5 3.0 2.8 2.1 161 chr3R 23070636 3` UTR CG13830 - chr3R 23070716 3` UTR CG13830 - chr3R 23070797 3` UTR CG13830 - chr3R_8_23070001 chr3R_23070001 RAL-303_100b 4445 chr3R 23073627 23073688 chr3R 23073741 23073802 47 111 30.5 19.0 24.8 1.8 175 chr3R 23073627 intron CG13830 - chr3R 23073714 intron CG13830 - chr3R 23073802 intron CG13830 - chr3R_47_23070001 chr3R_23070001 RAL-303_100b 4446 chr3R 23077049 23077106 chr3R 23077367 23077425 14 319 23.5 43.5 33.5 0.4 376 chr3R 23077049 intron CG13830 - chr3R 23077237 intron CG13830 - chr3R 23077425 intron CG13830 - chr3R_14_23075001 chr3R_23075001 RAL-303_100b 4447 chr3R 23082932 23082979 chr3R 23083150 23083193 13 218 61.5 54.0 57.8 0.2 261 chr3R 23082932 intron CG13830 - chr3R 23083062 intron CG13830 - chr3R 23083193 intron CG13830 - chr3R_13_23080001 chr3R_23080001 RAL-303_100b 4448 chr3R 23090377 23090431 chr3R 23090485 23090539 22 108 57.0 56.5 56.8 0.4 162 chr3R 23090377 intron CG13830 - chr3R 23090458 intron CG13830 - chr3R 23090539 intron CG13830 - chr3R_22_23090001 chr3R_23090001 RAL-303_100b 4449 chr3R 23091235 23091286 chr3R 23091344 23091396 20 109 54.0 37.5 45.8 0.4 161 chr3R 23091235 intron CG13830 - chr3R 23091316 intron CG13830 - chr3R 23091396 intron CG13830 - chr3R_20_23090001 chr3R_23090001 RAL-303_100b 4450 chr3R 23101361 23101385 chr3R 23101478 23101492 5 115 63.0 63.5 63.2 0.1 131 chr3R 23101361 intron CG13830 - chr3R 23101426 intron CG13830 - chr3R 23101492 intron CG13830 - chr3R_5_23100001 chr3R_23100001 RAL-303_100b 4451 chr3R 23101386 23101401 chr3R 23101477 23101517 10 108 57.5 63.5 60.5 0.2 131 chr3R 23101386 intron CG13830 - chr3R 23101452 intron CG13830 - chr3R 23101517 intron CG13830 - chr3R_10_23100001 chr3R_23100001 RAL-303_100b 4452 chr3R 23101403 23101409 chr3R 23101472 23101526 5 107 56.0 61.5 58.8 0.1 123 chr3R 23101403 intron CG13830 - chr3R 23101464 intron CG13830 - chr3R 23101526 intron CG13830 - chr3R_5_23100001 chr3R_23100001 RAL-303_100b 4453 chr3R 23114143 23114200 chr3R 23114246 23114298 25 100 65.5 66.5 66.0 0.4 155 chr3R 23114143 3` UTR Rassf - chr3R 23114220 3` UTR Rassf - chr3R 23114298 3` UTR Rassf - chr3R_25_23110001 chr3R_23110001 RAL-303_100b 4454 chr3R 23182474 23182647 chr3R 23182611 23182757 16 134 57.5 59.0 58.2 0.3 283 chr3R 23182474 intron Irk1 + chr3R 23182616 intron Irk1 + chr3R 23182757 intron Irk1 + chr3R_16_23180001 chr3R_23180001 RAL-303_100b 4455 chr3R 23197935 23197965 chr3R 23198039 23198066 18 104 33.5 18.5 26.0 0.7 131 chr3R 23197935 exon cnc - chr3R 23198000 intron cnc - chr3R 23198066 intron cnc - chr3R_18_23195001 chr3R_23195001 RAL-303_100b 4456 chr3R 23211959 23211989 chr3R 23212062 23212092 6 102 60.5 56.0 58.2 0.1 133 chr3R 23211959 intron cnc - chr3R 23212026 intron cnc - chr3R 23212092 intron cnc - chr3R_6_23210001 chr3R_23210001 RAL-303_100b 4457 chr3R 23225034 23225042 chr3R 23225135 23225143 4 101 10.0 0.0 5.0 0.7 109 chr3R 23225034 intron cnc - chr3R 23225088 intron cnc - chr3R 23225143 intron cnc - chr3R_4_23225001 chr3R_23225001 RAL-303_100b 4458 chr3R 23234825 23234841 chr3R 23234927 23234943 9 102 28.5 30.5 29.5 0.3 118 chr3R 23234825 intron CG4467 - chr3R 23234884 intron CG4467 - chr3R 23234943 intron CG4467 - chr3R_9_23230001 chr3R_23230001 RAL-303_100b 4459 chr3R 23242290 23242303 chr3R 23242375 23242396 8 92 54.5 39.0 46.8 0.2 106 chr3R 23242290 intron CG4467 - chr3R 23242343 intron CG4467 - chr3R 23242396 intron CG4467 - chr3R_8_23240001 chr3R_23240001 RAL-303_100b 4460 chr3R 23291202 23291278 chr3R 23291308 23291380 35 104 21.5 23.0 22.2 1.5 178 chr3R 23291202 3` UTR pnt - chr3R 23291291 3` UTR pnt - chr3R 23291380 exon pnt - chr3R_35_23290001 chr3R_23290001 RAL-303_100b 4461 chr3R 23319657 23319659 chr3R 23319760 23319763 5 103 0.0 15.0 7.5 0.6 106 chr3R 23319657 intron pnt - chr3R 23319710 intron pnt - chr3R 23319763 intron pnt - chr3R_5_23315001 chr3R_23315001 RAL-303_100b 4462 chr3R 23319660 23319676 chr3R 23319745 23319779 17 101 0.0 9.0 4.5 3.1 119 chr3R 23319660 intron pnt - chr3R 23319720 intron pnt - chr3R 23319779 intron pnt - chr3R_17_23315001 chr3R_23315001 RAL-303_100b 4463 chr3R 23335413 23335453 chr3R 23335516 23335556 36 100 21.5 15.0 18.2 1.9 143 chr3R 23335413 intron pnt - chr3R 23335484 intron pnt - chr3R 23335556 intron pnt - chr3R_36_23335001 chr3R_23335001 RAL-303_100b 4464 chr3R 23335454 23335466 chr3R 23335510 23335569 7 90 16.0 15.5 15.8 0.4 115 chr3R 23335454 intron pnt - chr3R 23335512 intron pnt - chr3R 23335569 intron pnt - chr3R_7_23335001 chr3R_23335001 RAL-303_100b 4465 chr3R 23338876 23338918 chr3R 23338971 23339019 19 93 18.5 16.5 17.5 1.0 143 chr3R 23338876 intron pnt - chr3R 23338948 intron pnt - chr3R 23339019 intron pnt - chr3R_19_23335001 chr3R_23335001 RAL-303_100b 4466 chr3R 23346560 23346844 chr3R 23346650 23346947 5 101 11.0 23.5 17.2 0.3 387 chr3R 23346560 intergenic pnt - chr3R 23346754 intergenic not near genes chr3R 23346947 intergenic not near genes chr3R_5_23345001 chr3R_23345001 RAL-303_100b 4467 chr3R 23346852 23346871 chr3R 23346950 23346974 4 102 7.0 19.0 13.0 0.3 122 chr3R 23346852 intergenic not near genes chr3R 23346913 intergenic not near genes chr3R 23346974 intergenic not near genes chr3R_4_23345001 chr3R_23345001 RAL-303_100b 4468 chr3R 23356976 23356983 chr3R 23357087 23357094 4 111 37.0 12.0 24.5 0.2 118 chr3R 23356976 intron Sec13 + chr3R 23357035 intron Sec13 + chr3R 23357094 intron Sec13 + chr3R_4_23355001 chr3R_23355001 RAL-303_100b 4469 chr3R 23356985 23357010 chr3R 23357073 23357121 11 109 25.5 12.5 19.0 0.6 136 chr3R 23356985 intron Sec13 + chr3R 23357053 intron Sec13 + chr3R 23357121 intron Sec13 + chr3R_11_23355001 chr3R_23355001 RAL-303_100b 4470 chr3R 23360175 23360201 chr3R 23360276 23360302 7 101 40.5 50.5 45.5 0.2 127 chr3R 23360175 3` UTR RpS3 + chr3R 23360238 intergenic RpS3 + chr3R 23360302 intergenic RpS3 + chr3R_7_23360001 chr3R_23360001 RAL-303_100b 4471 chr3R 23385565 23385610 chr3R 23385712 23385744 8 144 21.0 18.5 19.8 0.4 179 chr3R 23385565 intergenic not near genes chr3R 23385654 intergenic not near genes chr3R 23385744 intergenic not near genes chr3R_8_23385001 chr3R_23385001 RAL-303_100b 4472 chr3R 23390940 23390956 chr3R 23391047 23391047 10 105 11.5 0.0 5.8 1.5 107 chr3R 23390940 intergenic CR43387 + chr3R 23390994 intergenic CR43387 + chr3R 23391047 intergenic CR43387 + chr3R_10_23390001 chr3R_23390001 RAL-303_100b 4473 chr3R 23453660 23453674 chr3R 23453762 23453778 8 103 60.5 52.0 56.2 0.1 118 chr3R 23453660 intron CG4374 - chr3R 23453719 intron CG4374 - chr3R 23453778 intron CG4374 - chr3R_8_23450001 chr3R_23450001 RAL-303_100b 4474 chr3R 23453676 23453690 chr3R 23453760 23453794 12 102 56.5 50.5 53.5 0.2 118 chr3R 23453676 intron CG4374 - chr3R 23453735 intron CG4374 - chr3R 23453794 intron CG4374 - chr3R_12_23450001 chr3R_23450001 RAL-303_100b 4475 chr3R 23453693 23453709 chr3R 23453757 23453813 11 100 54.5 50.5 52.5 0.2 120 chr3R 23453693 intron CG4374 - chr3R 23453753 intron CG4374 - chr3R 23453813 intron CG4374 - chr3R_11_23450001 chr3R_23450001 RAL-303_100b 4476 chr3R 23488750 23488805 chr3R 23488954 23489009 17 202 55.5 64.0 59.8 0.3 259 chr3R 23488750 exon Ir94h + chr3R 23488880 exon Ir94h + chr3R 23489009 exon Ir94h + chr3R_17_23485001 chr3R_23485001 RAL-303_100b 4477 chr3R 23497921 23497970 chr3R 23498029 23498069 12 105 43.5 45.5 44.5 0.3 148 chr3R 23497921 intergenic not near genes chr3R 23497995 intergenic not near genes chr3R 23498069 intergenic not near genes chr3R_12_23495001 chr3R_23495001 RAL-303_100b 4478 chr3R 23535262 23535291 chr3R 23535473 23535526 10 222 68.5 69.0 68.8 0.1 264 chr3R 23535262 exon CG16732 - chr3R 23535394 exon CG16732 - chr3R 23535526 exon CG16732 - chr3R_10_23535001 chr3R_23535001 RAL-303_100b 4479 chr3R 23558374 23558427 chr3R 23560180 23560233 Bari1 51 1804 13.5 19.0 16.2 3.0 1859 chr3R 23558374 intron beat-IV + chr3R 23559304 intron beat-IV + chr3R 23560233 intron beat-IV + chr3R_51_23555001 chr3R_23555001 RAL-303_100b 4480 chr3R 23564419 23564475 chr3R 23564588 23564644 41 167 29.5 32.5 31.0 1.3 225 chr3R 23564419 intron beat-IV + chr3R 23564532 intron beat-IV + chr3R 23564644 intron beat-IV + chr3R_41_23560001 chr3R_23560001 RAL-303_100b 4481 chr3R 23568862 23568910 chr3R 23568965 23569013 18 101 64.5 59.5 62.0 0.3 151 chr3R 23568862 intron beat-IV + chr3R 23568938 intron beat-IV + chr3R 23569013 intron beat-IV + chr3R_18_23565001 chr3R_23565001 RAL-303_100b 4482 chr3R 23574387 23574429 chr3R 23574951 23574993 27 561 42.0 39.5 40.8 0.6 606 chr3R 23574387 exon beat-IV + chr3R 23574690 intron beat-IV + chr3R 23574993 intron beat-IV + chr3R_27_23570001 chr3R_23570001 RAL-303_100b 4483 chr3R 23590012 23590051 chr3R 23590135 23590174 15 120 50.5 60.5 55.5 0.3 162 chr3R 23590012 intergenic CG33337 -,CG10182 - chr3R 23590093 intergenic CG33337 -,CG10182 - chr3R 23590174 exon CG33337 - chr3R_15_23590001 chr3R_23590001 RAL-303_100b 4484 chr3R 23626118 23626352 chr3R 23626237 23626476 25 121 73.0 65.0 69.0 0.4 358 chr3R 23626118 intron CG31145 - chr3R 23626297 intron CG31145 - chr3R 23626476 intron CG31145 - chr3R_25_23625001 chr3R_23625001 RAL-303_100b 4485 chr3R 23627530 23627731 chr3R 23627632 23627838 18 95 37.0 24.0 30.5 0.6 308 chr3R 23627530 intron CG31145 - chr3R 23627684 intron CG31145 - chr3R 23627838 intron CG31145 - chr3R_18_23625001 chr3R_23625001 RAL-303_100b 4486 chr3R 23629417 23629464 chr3R 23629518 23629565 15 99 76.0 75.5 75.8 0.2 148 chr3R 23629417 intron CG31145 - chr3R 23629491 intron CG31145 - chr3R 23629565 intron CG31145 - chr3R_15_23625001 chr3R_23625001 RAL-303_100b 4487 chr3R 23676777 23676811 chr3R 23676910 23676939 12 129 33.0 42.5 37.8 0.3 162 chr3R 23676777 intergenic not near genes chr3R 23676858 intergenic CG13822 + chr3R 23676939 intergenic CG13822 + chr3R_12_23675001 chr3R_23675001 RAL-303_100b 4488 chr3R 23677167 23677197 chr3R 23677274 23677305 5 107 31.5 28.5 30.0 0.2 138 chr3R 23677167 intergenic CG13822 + chr3R 23677236 intergenic CG13822 + chr3R 23677305 intergenic CG13822 + chr3R_5_23675001 chr3R_23675001 RAL-303_100b 4489 chr3R 23684672 23684681 chr3R 23685183 23685187 roo 4 510 31.5 20.0 25.8 0.1 515 chr3R 23684672 exon CG18754 + chr3R 23684930 intron CG18754 + chr3R 23685187 exon CG18754 + chr3R_4_23680001 chr3R_23680001 RAL-303_100b 4490 chr3R 23684682 23684695 chr3R 23685182 23685206 roo 10 506 22.5 17.5 20.0 0.5 524 chr3R 23684682 exon CG18754 + chr3R 23684944 intron CG18754 + chr3R 23685206 exon CG18754 + chr3R_10_23680001 chr3R_23680001 RAL-303_100b 4491 chr3R 23684696 23684722 chr3R 23685181 23685233 roo 28 502 11.5 16.5 14.0 1.9 537 chr3R 23684696 exon CG18754 + chr3R 23684964 intron CG18754 + chr3R 23685233 exon CG18754 + chr3R_28_23680001 chr3R_23680001 RAL-303_100b 4492 chr3R 23697946 23697951 chr3R 23698017 23698050 5 99 21.0 43.5 32.2 0.2 104 chr3R 23697946 intron prt - chr3R 23697998 intron prt - chr3R 23698050 exon prt - chr3R_5_23695001 chr3R_23695001 RAL-303_100b 4493 chr3R 23714056 23714067 chr3R 23714168 23714179 5 112 40.0 21.5 30.8 0.2 123 chr3R 23714056 intron nau - chr3R 23714118 intron nau - chr3R 23714179 intron nau - chr3R_5_23710001 chr3R_23710001 RAL-303_100b 4494 chr3R 23784893 23785169 chr3R 23784973 23785244 27 96 63.0 42.5 52.8 0.5 351 chr3R 23784893 intron mbc + chr3R 23785068 intron mbc + chr3R 23785244 intron mbc + chr3R_27_23785001 chr3R_23785001 RAL-303_100b 4495 chr3R 23785173 23785195 chr3R 23785254 23785299 13 100 55.5 60.0 57.8 0.2 126 chr3R 23785173 intron mbc + chr3R 23785236 intron mbc + chr3R 23785299 intron mbc + chr3R_13_23785001 chr3R_23785001 RAL-303_100b 4496 chr3R 23820623 23820664 chr3R 23820732 23820773 6 108 52.0 53.0 52.5 0.1 150 chr3R 23820623 5` UTR CG34355 + chr3R 23820698 5` UTR CG34355 + chr3R 23820773 5` UTR CG34355 + chr3R_6_23820001 chr3R_23820001 RAL-303_100b 4497 chr3R 23835079 23835133 chr3R 23835343 23835397 20 261 55.5 53.0 54.2 0.4 318 chr3R 23835079 intron CG34355 + chr3R 23835238 intron CG34355 + chr3R 23835397 intron CG34355 + chr3R_20_23835001 chr3R_23835001 RAL-303_100b 4498 chr3R 23835383 23835435 chr3R 23844558 23844580 roo 38 9173 10.5 6.0 8.2 4.1 9197 chr3R 23835383 intron CG34355 + chr3R 23839982 intron CG34355 + chr3R 23844580 intron CG34355 + chr3R_38_23835001 chr3R_23835001 RAL-303_100b 4499 chr3R 23851064 23851087 chr3R 23858756 23858779 opus 20 7692 14.0 29.5 21.8 0.9 7715 chr3R 23851064 3` UTR CG34355 + chr3R 23854922 intergenic not near genes chr3R 23858779 intergenic not near genes chr3R_20_23850001 chr3R_23850001 RAL-303_100b 4500 chr3R 23865010 23865064 chr3R 23865124 23865161 21 109 65.5 70.5 68.0 0.3 151 chr3R 23865010 intron Pli - chr3R 23865086 intron Pli - chr3R 23865161 intron Pli - chr3R_21_23865001 chr3R_23865001 RAL-303_100b 4501 chr3R 16087065 16087069 chr3R 23867960 23867964 5 7780895 53.5 38.5 46.0 0.1 7780899 chr3R 16087065 intron,3` UTR Mhcl -,sxe2 + chr3R 19977514 intron,exon Hs6st -,CG31213 + chr3R 23867964 intron Pli - chr3R_5_19975001 chr3R_19975001 RAL-303_100b 4502 chr3R 23884278 23884300 chr3R 23884387 23884407 13 109 55.5 43.5 49.5 0.3 129 chr3R 23884278 intron Pli - chr3R 23884342 intron Pli - chr3R 23884407 intron Pli - chr3R_13_23880001 chr3R_23880001 RAL-303_100b 4503 chr3R 23884305 23884326 chr3R 23884386 23884429 18 103 49.5 43.0 46.2 0.4 124 chr3R 23884305 intron Pli - chr3R 23884367 intron Pli - chr3R 23884429 intron Pli - chr3R_18_23880001 chr3R_23880001 RAL-303_100b 4504 chr3R 23888062 23888113 chr3R 23888173 23888224 19 109 40.5 39.0 39.8 0.5 162 chr3R 23888062 intron Pli - chr3R 23888143 intron Pli - chr3R 23888224 intron Pli - chr3R_19_23885001 chr3R_23885001 RAL-303_100b 4505 chr3R 23944887 23944898 chr3R 23944997 23945008 11 110 36.5 14.0 25.2 0.4 121 chr3R 23944887 intron CG12268 - chr3R 23944948 intron CG12268 - chr3R 23945008 intron CG12268 - chr3R_11_23940001 chr3R_23940001 RAL-303_100b 4506 chr3R 23944899 23944936 chr3R 23944996 23945046 45 106 10.5 14.0 12.2 3.4 147 chr3R 23944899 intron CG12268 - chr3R 23944972 intron CG12268 - chr3R 23945046 exon CG12268 - chr3R_45_23940001 chr3R_23940001 RAL-303_100b 4507 chr3R 23949015 23949067 chr3R 23949117 23949169 17 100 60.0 60.0 60.0 0.3 154 chr3R 23949015 intergenic not near genes chr3R 23949092 intergenic not near genes chr3R 23949169 intergenic not near genes chr3R_17_23945001 chr3R_23945001 RAL-303_100b 4508 chr3R 23969737 23969795 chr3R 23969859 23969917 18 117 65.0 71.5 68.2 0.3 180 chr3R 23969737 intron CG31140 + chr3R 23969827 intron CG31140 + chr3R 23969917 intron CG31140 + chr3R_18_23965001 chr3R_23965001 RAL-303_100b 4509 chr3R 24011643 24011673 chr3R 24011751 24011781 16 106 9.0 7.0 8.0 1.8 138 chr3R 24011643 intron KrT95D - chr3R 24011712 intron KrT95D - chr3R 24011781 intron KrT95D - chr3R_16_24010001 chr3R_24010001 RAL-303_100b 4510 chr3R 24021601 24021660 chr3R 24021716 24021775 20 115 36.5 35.5 36.0 0.5 174 chr3R 24021601 intron KrT95D - chr3R 24021688 intron KrT95D - chr3R 24021775 intron KrT95D - chr3R_20_24020001 chr3R_24020001 RAL-303_100b 4511 chr3R 24072060 24072080 chr3R 24072523 24072523 jockey 27 460 42.5 17.0 29.8 0.9 463 chr3R 24072060 intron 4EHP - chr3R 24072292 intron 4EHP - chr3R 24072523 intron 4EHP - chr3R_27_24070001 chr3R_24070001 RAL-303_100b 4512 chr3R 24072081 24072116 chr3R 24072521 24072577 jockey 25 455 18.0 16.5 17.2 1.4 496 chr3R 24072081 intron 4EHP - chr3R 24072329 intron 4EHP - chr3R 24072577 intron 4EHP - chr3R_25_24070001 chr3R_24070001 RAL-303_100b 4513 chr3R 24076891 24076946 chr3R 24078383 24078438 hobo 45 1488 13.5 25.0 19.2 2.2 1547 chr3R 24076891 intron 4EHP - chr3R 24077664 intron 4EHP - chr3R 24078438 intron 4EHP - chr3R_45_24075001 chr3R_24075001 RAL-303_100b 4514 chr3R 24100435 24100605 chr3R 24100555 24100854 50 160 37.0 25.0 31.0 1.6 419 chr3R 24100435 intron 4EHP - chr3R 24100644 intron 4EHP - chr3R 24100854 intron 4EHP - chr3R_50_24100001 chr3R_24100001 RAL-303_100b 4515 chr3R 24113744 24113975 chr3R 24113932 24114078 25 150 43.0 39.0 41.0 0.6 334 chr3R 24113744 intron Rootletin + chr3R 24113911 intron Rootletin + chr3R 24114078 intron,3` UTR Rootletin +,CG13607 - chr3R_25_24110001 chr3R_24110001 RAL-303_100b 4516 chr3R 24143982 24144009 chr3R 24144087 24144114 11 104 57.0 63.0 60.0 0.2 132 chr3R 24143982 intron Kal1 + chr3R 24144048 intron Kal1 + chr3R 24144114 intron Kal1 + chr3R_11_24140001 chr3R_24140001 RAL-303_100b 4517 chr3R 24173529 24173581 chr3R 24173636 24173688 16 105 41.5 43.5 42.5 0.4 159 chr3R 24173529 intron CG13606 + chr3R 24173608 intron CG13606 + chr3R 24173688 intron CG13606 + chr3R_16_24170001 chr3R_24170001 RAL-303_100b 4518 chr3R 24207195 24207220 chr3R 24212290 24212321 flea 27 5100 33.0 22.5 27.8 0.9 5126 chr3R 24207195 intron twin - chr3R 24209758 intron twin - chr3R 24212321 intron twin - chr3R_27_24205001 chr3R_24205001 RAL-303_100b 4519 chr3R 24207222 24207243 chr3R 24212288 24212344 flea 21 5097 21.5 22.0 21.8 0.9 5122 chr3R 24207222 intron twin - chr3R 24209783 intron twin - chr3R 24212344 intron twin - chr3R_21_24205001 chr3R_24205001 RAL-303_100b 4520 chr3R 24220648 24220700 chr3R 24220752 24220789 11 102 43.0 40.5 41.8 0.3 141 chr3R 24220648 intron twin - chr3R 24220718 intron twin - chr3R 24220789 intron twin - chr3R_11_24220001 chr3R_24220001 RAL-303_100b 4521 chr3R 24431576 24431577 chr3R 24431680 24431681 4 104 40.0 0.0 20.0 0.2 105 chr3R 24431576 intron nAChRalpha1 - chr3R 24431628 intron nAChRalpha1 - chr3R 24431681 intron nAChRalpha1 - chr3R_4_24430001 chr3R_24430001 RAL-303_100b 4522 chr3R 24431579 24431627 chr3R 24431678 24431731 53 103 15.5 0.0 7.8 6.0 152 chr3R 24431579 intron nAChRalpha1 - chr3R 24431655 intron nAChRalpha1 - chr3R 24431731 intron nAChRalpha1 - chr3R_53_24430001 chr3R_24430001 RAL-303_100b 4523 chr3R 24433466 24433478 chr3R 24433570 24433582 13 104 5.0 20.0 12.5 1.0 116 chr3R 24433466 intron nAChRalpha1 - chr3R 24433524 intron nAChRalpha1 - chr3R 24433582 intron nAChRalpha1 - chr3R_13_24430001 chr3R_24430001 RAL-303_100b 4524 chr3R 24433479 24433505 chr3R 24433563 24433609 27 103 4.5 16.0 10.2 2.4 130 chr3R 24433479 intron nAChRalpha1 - chr3R 24433544 intron nAChRalpha1 - chr3R 24433609 intron nAChRalpha1 - chr3R_27_24430001 chr3R_24430001 RAL-303_100b 4525 chr3R 24434230 24434274 chr3R 24434333 24434377 14 102 44.5 47.0 45.8 0.3 147 chr3R 24434230 intron nAChRalpha1 - chr3R 24434304 intron nAChRalpha1 - chr3R 24434377 intron nAChRalpha1 - chr3R_14_24430001 chr3R_24430001 RAL-303_100b 4526 chr3R 24447723 24447756 chr3R 24447835 24447868 10 112 21.0 32.5 26.8 0.4 145 chr3R 24447723 intron nAChRalpha1 - chr3R 24447796 intron nAChRalpha1 - chr3R 24447868 intron nAChRalpha1 - chr3R_10_24445001 chr3R_24445001 RAL-303_100b 4527 chr3R 24482900 24482927 chr3R 24483013 24483034 17 111 33.5 14.5 24.0 0.7 134 chr3R 24482900 intergenic not near genes chr3R 24482967 intergenic not near genes chr3R 24483034 intergenic not near genes chr3R_17_24480001 chr3R_24480001 RAL-303_100b 4528 chr3R 24493254 24493282 chr3R 24493508 24493537 BS 33 254 22.5 20.5 21.5 1.5 283 chr3R 24493254 intergenic not near genes chr3R 24493396 intergenic not near genes chr3R 24493537 intergenic not near genes chr3R_33_24490001 chr3R_24490001 RAL-303_100b 4529 chr3R 24493283 24493305 chr3R 24493503 24493558 BS 24 251 14.0 17.0 15.5 1.5 275 chr3R 24493283 intergenic not near genes chr3R 24493420 intergenic not near genes chr3R 24493558 intergenic not near genes chr3R_24_24490001 chr3R_24490001 RAL-303_100b 4530 chr3R 24522294 24522315 chr3R 24522559 24522580 5 263 38.5 21.0 29.8 0.2 286 chr3R 24522294 3` UTR Pp1alpha-96A + chr3R 24522437 intergenic CG13622 -,Pp1alpha-96A + chr3R 24522580 3` UTR CG13622 - chr3R_5_24520001 chr3R_24520001 RAL-303_100b 4531 chr3R 24522319 24522337 chr3R 24522554 24522562 5 251 32.5 23.0 27.8 0.2 243 chr3R 24522319 3` UTR Pp1alpha-96A + chr3R 24522440 intergenic CG13622 -,Pp1alpha-96A + chr3R 24522562 3` UTR CG13622 - chr3R_5_24520001 chr3R_24520001 RAL-303_100b 4532 chr3R 24523875 24523923 chr3R 24523986 24524033 7 109 34.0 31.0 32.5 0.2 158 chr3R 24523875 intergenic CG13622 - chr3R 24523954 intergenic CG13622 - chr3R 24524033 intergenic CG13622 - chr3R_7_24520001 chr3R_24520001 RAL-303_100b 4533 chr3R 24525782 24525838 chr3R 24525887 24525943 30 104 36.5 36.0 36.2 0.8 161 chr3R 24525782 intron CG13618 + chr3R 24525862 intron CG13618 + chr3R 24525943 intron CG13618 + chr3R_30_24525001 chr3R_24525001 RAL-303_100b 4534 chr3R 24527779 24527834 chr3R 24527895 24527950 36 115 6.5 6.5 6.5 4.8 171 chr3R 24527779 intergenic CG13618 +,CG6607 + chr3R 24527864 intergenic CG6607 +,CG13618 + chr3R 24527950 intergenic CG6607 +,CG13618 + chr3R_36_24525001 chr3R_24525001 RAL-303_100b 4535 chr3R 24572085 24572122 chr3R 24572204 24572241 13 117 67.0 63.5 65.2 0.2 156 chr3R 24572085 intron CG13624 - chr3R 24572163 intron CG13624 - chr3R 24572241 intron CG13624 - chr3R_13_24570001 chr3R_24570001 RAL-303_100b 4536 chr3R 24572124 24572136 chr3R 24572198 24572250 5 102 64.0 63.0 63.5 0.1 126 chr3R 24572124 intron CG13624 - chr3R 24572187 intron CG13624 - chr3R 24572250 intron CG13624 - chr3R_5_24570001 chr3R_24570001 RAL-303_100b 4537 chr3R 24594652 24594667 chr3R 24594917 24594932 pogo 14 265 17.5 27.0 22.2 0.6 280 chr3R 24594652 intron mld + chr3R 24594792 intron mld + chr3R 24594932 intron mld + chr3R_14_24590001 chr3R_24590001 RAL-303_100b 4538 chr3R 24596679 24596703 chr3R 24596770 24596805 10 101 58.0 66.0 62.0 0.2 126 chr3R 24596679 intron mld + chr3R 24596742 intron mld + chr3R 24596805 intron mld + chr3R_10_24595001 chr3R_24595001 RAL-303_100b 4539 chr3R 24624367 24624383 chr3R 24624471 24624497 11 113 45.5 50.0 47.8 0.2 130 chr3R 24624367 intron Syx18 - chr3R 24624432 intron Syx18 - chr3R 24624497 exon Syx18 - chr3R_11_24620001 chr3R_24620001 RAL-303_100b 4540 chr3R 24667581 24667620 chr3R 24667683 24667722 8 102 45.5 37.0 41.2 0.2 141 chr3R 24667581 intron slo + chr3R 24667652 intron slo + chr3R 24667722 intron slo + chr3R_8_24665001 chr3R_24665001 RAL-303_100b 4541 chr3R 24670136 24670199 chr3R 24670245 24670285 34 107 2.0 6.5 4.2 6.5 149 chr3R 24670136 intron slo + chr3R 24670210 intron slo + chr3R 24670285 intron slo + chr3R_34_24670001 chr3R_24670001 RAL-303_100b 4542 chr3R 24671193 24671254 chr3R 24671295 24671356 39 99 12.5 22.0 17.2 2.1 163 chr3R 24671193 intron slo + chr3R 24671274 intron slo + chr3R 24671356 intron slo + chr3R_39_24670001 chr3R_24670001 RAL-303_100b 4543 chr3R 24730068 24730078 chr3R 24732471 24732481 Doc 7 2403 35.0 0.5 17.8 0.4 2413 chr3R 24730068 intron tok + chr3R 24731274 intron tok + chr3R 24732481 intron tok + chr3R_7_24730001 chr3R_24730001 RAL-303_100b 4544 chr3R 24730079 24730118 chr3R 24732468 24732495 Doc 26 2398 17.0 0.5 8.8 2.7 2416 chr3R 24730079 intron tok + chr3R 24731287 intron tok + chr3R 24732495 intron tok + chr3R_26_24730001 chr3R_24730001 RAL-303_100b 4545 chr3R 24743010 24743061 chr3R 24743114 24743171 15 108 33.0 37.0 35.0 0.4 161 chr3R 24743010 intron tok + chr3R 24743090 intron tok + chr3R 24743171 exon tok + chr3R_15_24740001 chr3R_24740001 RAL-303_100b 4546 chr3R 24789957 24790012 chr3R 24790127 24790182 24 168 30.0 43.0 36.5 0.6 225 chr3R 24789957 intron,5` UTR Ets96B +,CG13634 - chr3R 24790070 intron,5` UTR Ets96B +,CG13634 - chr3R 24790182 intron Ets96B + chr3R_24_24790001 chr3R_24790001 RAL-303_100b 4547 chr3R 24792002 24792013 chr3R 24792108 24792117 6 106 35.0 45.0 40.0 0.1 115 chr3R 24792002 intron Ets96B + chr3R 24792060 intron Ets96B + chr3R 24792117 intron Ets96B + chr3R_6_24790001 chr3R_24790001 RAL-303_100b 4548 chr3R 24792015 24792041 chr3R 24792106 24792147 14 105 36.0 45.0 40.5 0.3 132 chr3R 24792015 intron Ets96B + chr3R 24792081 intron Ets96B + chr3R 24792147 intron Ets96B + chr3R_14_24790001 chr3R_24790001 RAL-303_100b 4549 chr3R 24842077 24842135 chr3R 24842188 24842246 29 109 41.0 43.0 42.0 0.7 169 chr3R 24842077 5` UTR Esp + chr3R 24842162 5` UTR Esp + chr3R 24842246 5` UTR Esp + chr3R_29_24840001 chr3R_24840001 RAL-303_100b 4550 chr3R 24854862 24854912 chr3R 24854969 24855019 16 107 31.0 33.5 32.2 0.5 157 chr3R 24854862 3` UTR,3` UTR nct +,HdacX - chr3R 24854940 3` UTR HdacX - chr3R 24855019 3` UTR HdacX - chr3R_16_24850001 chr3R_24850001 RAL-303_100b 4551 chr3R 24886756 24886757 chr3R 28073939 28073940 4 3187183 50.5 17.0 33.8 0.1 3187184 chr3R 24886756 intron CG31121 - chr3R 26480348 intron plum - chr3R 28073940 intron CG34362 + chr3R_4_26480001 chr3R_26480001 RAL-303_100b 4552 chr3R 24893442 24893481 chr3R 24893546 24893576 12 104 29.0 29.0 29.0 0.4 134 chr3R 24893442 intron CG31121 - chr3R 24893509 intron CG31121 - chr3R 24893576 intron CG31121 - chr3R_12_24890001 chr3R_24890001 RAL-303_100b 4553 chr3R 24912457 24912513 chr3R 24912564 24912620 39 106 8.5 11.0 9.8 3.6 163 chr3R 24912457 intergenic not near genes chr3R 24912538 intergenic CR44267 + chr3R 24912620 intergenic CR44267 + chr3R_39_24910001 chr3R_24910001 RAL-303_100b 4554 chr3R 24927103 24927149 chr3R 24931919 24931964 Doc 41 4811 21.0 18.5 19.8 2.0 4861 chr3R 24927103 intergenic Trf4-2 + chr3R 24929534 intergenic not near genes chr3R 24931964 intergenic CG11771 + chr3R_41_24925001 chr3R_24925001 RAL-303_100b 4555 chr3R 24973930 24973956 chr3R 24974031 24974057 21 99 58.5 54.0 56.2 0.4 127 chr3R 24973930 intergenic not near genes chr3R 24973994 intergenic not near genes chr3R 24974057 intergenic not near genes chr3R_21_24970001 chr3R_24970001 RAL-303_100b 4556 chr3R 24973957 24973978 chr3R 24974028 24974064 16 95 50.5 53.0 51.8 0.3 107 chr3R 24973957 intergenic not near genes chr3R 24974010 intergenic not near genes chr3R 24974064 intergenic not near genes chr3R_16_24970001 chr3R_24970001 RAL-303_100b 4557 chr3R 25004895 25004916 chr3R 25005003 25005024 17 107 46.0 49.0 47.5 0.4 129 chr3R 25004895 intron tnc + chr3R 25004960 intron tnc + chr3R 25005024 intron tnc + chr3R_17_25000001 chr3R_25000001 RAL-303_100b 4558 chr3R 25050963 25051005 chr3R 25051065 25051095 17 95 47.0 59.0 53.0 0.3 132 chr3R 25050963 intron CG11791 + chr3R 25051029 intron CG11791 + chr3R 25051095 intron CG11791 + chr3R_17_25050001 chr3R_25050001 RAL-303_100b 4559 chr3R 25052198 25052248 chr3R 25052319 25052350 16 118 44.0 36.0 40.0 0.4 152 chr3R 25052198 intron CG11791 + chr3R 25052274 intron CG11791 + chr3R 25052350 intron CG11791 + chr3R_16_25050001 chr3R_25050001 RAL-303_100b 4560 chr3R 25053093 25053158 chr3R 25053217 25053252 10 114 56.0 69.5 62.8 0.2 159 chr3R 25053093 intergenic CG11791 +,CG31109 - chr3R 25053172 intergenic CG11791 +,CG31109 - chr3R 25053252 intergenic CG31109 -,CG11791 + chr3R_10_25050001 chr3R_25050001 RAL-303_100b 4561 chr3R 25072734 25072788 chr3R 25072851 25072905 22 116 59.0 65.0 62.0 0.3 171 chr3R 25072734 3` UTR CG9996 - chr3R 25072820 3` UTR CG9996 - chr3R 25072905 exon CG9996 - chr3R_22_25070001 chr3R_25070001 RAL-303_100b 4562 chr3R 25093122 25093158 chr3R 25093390 25093431 9 272 62.0 60.5 61.2 0.1 309 chr3R 25093122 intergenic not near genes chr3R 25093276 intergenic not near genes chr3R 25093431 intergenic not near genes chr3R_9_25090001 chr3R_25090001 RAL-303_100b 4563 chr3R 25126029 25126060 chr3R 25126648 25126679 4 619 84.0 80.0 82.0 0.0 650 chr3R 25126029 3` UTR,exon CG42503 -,Mocs2 - chr3R 25126354 3` UTR,exon CG42503 -,Mocs2 - chr3R 25126679 3` UTR,exon CG42503 -,Mocs2 - chr3R_4_25125001 chr3R_25125001 RAL-303_100b 4564 chr3R 25136379 25136417 chr3R 25136484 25136522 7 101 22.5 10.0 16.2 0.4 143 chr3R 25136379 3` UTR Bili + chr3R 25136450 3` UTR Bili + chr3R 25136522 3` UTR Bili + chr3R_7_25135001 chr3R_25135001 RAL-303_100b 4565 chr3R 25159480 25159538 chr3R 25159593 25159651 26 111 42.0 43.5 42.8 0.6 171 chr3R 25159480 intergenic not near genes chr3R 25159566 intergenic not near genes chr3R 25159651 intergenic not near genes chr3R_26_25155001 chr3R_25155001 RAL-303_100b 4566 chr3R 25166236 25166343 chr3R 25166341 25166444 9 103 39.0 41.0 40.0 0.2 208 chr3R 25166236 intergenic not near genes chr3R 25166340 intergenic not near genes chr3R 25166444 intergenic not near genes chr3R_9_25165001 chr3R_25165001 RAL-303_100b 4567 chr3R 25166344 25166391 chr3R 25166445 25166492 10 101 38.0 39.0 38.5 0.3 148 chr3R 25166344 intergenic not near genes chr3R 25166418 intergenic not near genes chr3R 25166492 intergenic not near genes chr3R_10_25165001 chr3R_25165001 RAL-303_100b 4568 chr3R 25203326 25203376 chr3R 25203479 25203531 32 154 47.0 54.5 50.8 0.6 205 chr3R 25203326 intron,intron Cad96Ca -,CG13654 + chr3R 25203428 intron,intron Cad96Ca -,CG13654 + chr3R 25203531 intron,intron Cad96Ca -,CG13654 + chr3R_32_25200001 chr3R_25200001 RAL-303_100b 4569 chr3R 25209570 25209628 chr3R 25209677 25209703 16 101 63.0 71.0 67.0 0.2 133 chr3R 25209570 intron CG13654 + chr3R 25209636 intron CG13654 + chr3R 25209703 intron CG13654 + chr3R_16_25205001 chr3R_25205001 RAL-303_100b 4570 chr3R 25235671 25235846 chr3R 25235786 25235951 33 109 27.0 21.0 24.0 1.3 280 chr3R 25235671 intergenic CG10420 - chr3R 25235811 intergenic CG10420 - chr3R 25235951 intergenic CG10420 - chr3R_33_25235001 chr3R_25235001 RAL-303_100b 4571 chr3R 25302652 25302707 chr3R 25302926 25302981 27 272 48.0 54.5 51.2 0.5 329 chr3R 25302652 exon CG31370 + chr3R 25302816 exon CG31370 + chr3R 25302981 exon CG31370 + chr3R_27_25300001 chr3R_25300001 RAL-303_100b 4572 chr3R 25324365 25324389 chr3R 25328955 25328979 Doc 26 4589 17.0 40.0 28.5 0.9 4614 chr3R 25324365 exon CHKov1 - chr3R 25326672 intron CHKov1 - chr3R 25328979 exon CHKov1 - chr3R_26_25325001 chr3R_25325001 RAL-303_100b 4573 chr3R 25368448 25368487 chr3R 25368591 25368605 37 137 25.0 0.0 12.5 2.7 157 chr3R 25368448 intron Fur1 - chr3R 25368526 intron Fur1 - chr3R 25368605 intron Fur1 - chr3R_37_25365001 chr3R_25365001 RAL-303_100b 4574 chr3R 24758582 24758639 chr3R 25370749 25370806 13 612172 100.5 57.5 79.0 0.2 612224 chr3R 24758582 exon asp + chr3R 25064694 exon veli - chr3R 25370806 intron Fur1 - chr3R_13_25060001 chr3R_25060001 RAL-303_100b 4575 chr3R 25407532 25407565 chr3R 25407831 25407859 4 298 59.5 36.5 48.0 0.1 327 chr3R 25407532 intron Fur1 - chr3R 25407696 intron Fur1 - chr3R 25407859 intron Fur1 - chr3R_4_25405001 chr3R_25405001 RAL-303_100b 4576 chr3R 25411754 25411806 chr3R 25411875 25411924 14 122 36.0 40.0 38.0 0.4 170 chr3R 25411754 intron Fur1 - chr3R 25411839 intron Fur1 - chr3R 25411924 intron Fur1 - chr3R_14_25410001 chr3R_25410001 RAL-303_100b 4577 chr3R 25422041 25422090 chr3R 25422147 25422166 17 104 43.5 44.0 43.8 0.4 125 chr3R 25422041 intron Fur1 - chr3R 25422104 intron Fur1 - chr3R 25422166 intron Fur1 - chr3R_17_25420001 chr3R_25420001 RAL-303_100b 4578 chr3R 25431422 25431443 chr3R 25431533 25431546 4 109 34.0 42.0 38.0 0.1 124 chr3R 25431422 intron Fur1 - chr3R 25431484 intron Fur1 - chr3R 25431546 intron Fur1 - chr3R_4_25430001 chr3R_25430001 RAL-303_100b 4579 chr3R 25431819 25431827 chr3R 25431969 25431977 4 150 56.5 53.5 55.0 0.1 158 chr3R 25431819 intron Fur1 - chr3R 25431898 intron Fur1 - chr3R 25431977 5` UTR Fur1 - chr3R_4_25430001 chr3R_25430001 RAL-303_100b 4580 chr3R 25431834 25431867 chr3R 25431968 25432017 13 146 52.5 55.0 53.8 0.2 183 chr3R 25431834 intron Fur1 - chr3R 25431926 5` UTR Fur1 - chr3R 25432017 intron Fur1 - chr3R_13_25430001 chr3R_25430001 RAL-303_100b 4581 chr3R 25436470 25436518 chr3R 25436589 25436636 11 105 62.0 56.5 59.2 0.2 166 chr3R 25436470 intron Fur1 - chr3R 25436553 intron Fur1 - chr3R 25436636 intron Fur1 - chr3R_11_25435001 chr3R_25435001 RAL-303_100b 4582 chr3R 25448824 25448863 chr3R 25448911 25448963 10 98 55.0 57.5 56.2 0.2 139 chr3R 25448824 intron Fur1 - chr3R 25448894 intron Fur1 - chr3R 25448963 intron Fur1 - chr3R_10_25445001 chr3R_25445001 RAL-303_100b 4583 chr3R 25453751 25453800 chr3R 25453947 25453996 17 192 56.5 52.0 54.2 0.3 245 chr3R 25453751 intron Fur1 - chr3R 25453874 intron Fur1 - chr3R 25453996 intron Fur1 - chr3R_17_25450001 chr3R_25450001 RAL-303_100b 4584 chr3R 25514411 25514449 chr3R 25514517 25514555 26 106 15.0 24.5 19.8 1.2 144 chr3R 25514411 intergenic not near genes chr3R 25514483 intergenic not near genes chr3R 25514555 intergenic not near genes chr3R_26_25510001 chr3R_25510001 RAL-303_100b 4585 chr3R 25520965 25520987 chr3R 25521089 25521111 12 123 38.0 32.0 35.0 0.3 146 chr3R 25520965 intron msi + chr3R 25521038 intron msi + chr3R 25521111 intron msi + chr3R_12_25520001 chr3R_25520001 RAL-303_100b 4586 chr3R 25528013 25528035 chr3R 25528141 25528163 7 128 54.5 51.5 53.0 0.1 150 chr3R 25528013 intron msi + chr3R 25528088 intron msi + chr3R 25528163 intron msi + chr3R_7_25525001 chr3R_25525001 RAL-303_100b 4587 chr3R 7773344 7773344 chr3R 25538124 25538124 5 17764780 69.0 51.0 60.0 0.1 17764780 chr3R 7773344 intergenic not near genes chr3R 16655734 intergenic modSP - chr3R 25538124 intron msi + chr3R_5_16655001 chr3R_16655001 RAL-303_100b 4588 chr3R 25571866 25571870 chr3R 25571979 25571983 7 113 40.5 53.5 47.0 0.1 117 chr3R 25571866 intron msi + chr3R 25571924 intron msi + chr3R 25571983 intron msi + chr3R_7_25570001 chr3R_25570001 RAL-303_100b 4589 chr3R 25591384 25591438 chr3R 25591487 25591541 19 100 17.0 8.0 12.5 1.4 157 chr3R 25591384 intron msi + chr3R 25591462 intron msi + chr3R 25591541 intron,3` UTR msi +,ymp - chr3R_19_25590001 chr3R_25590001 RAL-303_100b 4590 chr3R 25669039 25669094 chr3R 25669158 25669213 9 117 56.5 58.5 57.5 0.2 174 chr3R 25669039 intron Lgr3 + chr3R 25669126 intron Lgr3 + chr3R 25669213 exon Lgr3 + chr3R_9_25665001 chr3R_25665001 RAL-303_100b 4591 chr3R 25671220 25671272 chr3R 25671343 25671397 8 124 52.5 45.0 48.8 0.2 177 chr3R 25671220 intron Lgr3 + chr3R 25671308 intron Lgr3 + chr3R 25671397 intron Lgr3 + chr3R_8_25670001 chr3R_25670001 RAL-303_100b 4592 chr3R 25682817 25682871 chr3R 25682938 25682996 34 122 45.0 44.5 44.8 0.7 179 chr3R 25682817 intron CG5028 + chr3R 25682906 intron CG5028 + chr3R 25682996 intron CG5028 + chr3R_34_25680001 chr3R_25680001 RAL-303_100b 4593 chr3R 25689107 25689127 chr3R 25689240 25689260 12 133 46.5 32.5 39.5 0.3 153 chr3R 25689107 intergenic not near genes chr3R 25689184 intergenic not near genes chr3R 25689260 intergenic not near genes chr3R_12_25685001 chr3R_25685001 RAL-303_100b 4594 chr3R 25689130 25689152 chr3R 25689239 25689285 21 130 39.5 32.5 36.0 0.6 155 chr3R 25689130 intergenic not near genes chr3R 25689208 intergenic not near genes chr3R 25689285 intergenic not near genes chr3R_21_25685001 chr3R_25685001 RAL-303_100b 4595 chr3R 25709586 25709646 chr3R 25709693 25709753 17 106 38.5 50.0 44.2 0.4 167 chr3R 25709586 intron LpR2 - chr3R 25709670 intron LpR2 - chr3R 25709753 intron LpR2 - chr3R_17_25705001 chr3R_25705001 RAL-303_100b 4596 chr3R 25721244 25721292 chr3R 25721350 25721397 13 103 60.5 61.5 61.0 0.2 153 chr3R 25721244 intron LpR2 - chr3R 25721320 intron LpR2 - chr3R 25721397 intron LpR2 - chr3R_13_25720001 chr3R_25720001 RAL-303_100b 4597 chr3R 25725803 25725860 chr3R 25734988 25735045 roo 36 9184 8.0 11.0 9.5 3.4 9242 chr3R 25725803 intron LpR2 - chr3R 25730424 intron LpR2 - chr3R 25735045 intron LpR2 - chr3R_36_25730001 chr3R_25730001 RAL-303_100b 4598 chr3R 25738612 25738665 chr3R 25738719 25738778 38 108 27.5 24.5 26.0 1.4 166 chr3R 25738612 intron LpR2 - chr3R 25738695 intron LpR2 - chr3R 25738778 intron LpR2 - chr3R_38_25735001 chr3R_25735001 RAL-303_100b 4599 chr3R 25755720 25755766 chr3R 25755833 25755879 15 111 58.5 61.5 60.0 0.2 159 chr3R 25755720 intron LpR1 - chr3R 25755800 intron LpR1 - chr3R 25755879 intron LpR1 - chr3R_15_25755001 chr3R_25755001 RAL-303_100b 4600 chr3R 25796364 25796373 chr3R 25796468 25796475 4 104 62.0 31.5 46.8 0.1 111 chr3R 25796364 intergenic CR43847 - chr3R 25796420 intergenic CR43847 - chr3R 25796475 intergenic CR43847 - chr3R_4_25795001 chr3R_25795001 RAL-303_100b 4601 chr3R 25796374 25796381 chr3R 25796460 25796475 4 93 60.5 33.5 47.0 0.1 101 chr3R 25796374 intergenic CR43847 - chr3R 25796424 intergenic CR43847 - chr3R 25796475 intergenic CR43847 - chr3R_4_25795001 chr3R_25795001 RAL-303_100b 4602 chr3R 25832670 25832687 chr3R 25841877 25841894 roo 12 9207 28.0 20.5 24.2 0.5 9224 chr3R 25832670 exon alpha4GT2 + chr3R 25837282 intron alpha4GT2 + chr3R 25841894 exon alpha4GT2 + chr3R_12_25835001 chr3R_25835001 RAL-303_100b 4603 chr3R 25832688 25832709 chr3R 25841875 25841915 roo 19 9204 15.5 18.5 17.0 1.1 9227 chr3R 25832688 exon alpha4GT2 + chr3R 25837302 intron alpha4GT2 + chr3R 25841915 exon alpha4GT2 + chr3R_19_25835001 chr3R_25835001 RAL-303_100b 4604 chr3R 25832711 25832722 chr3R 25841871 25841928 roo 12 9198 10.5 16.0 13.2 0.8 9217 chr3R 25832711 exon alpha4GT2 + chr3R 25837320 intron alpha4GT2 + chr3R 25841928 exon alpha4GT2 + chr3R_12_25835001 chr3R_25835001 RAL-303_100b 4605 chr3R 25843610 25843668 chr3R 25843765 25843823 56 152 11.5 18.0 14.8 3.5 213 chr3R 25843610 intergenic CR45653 + chr3R 25843716 intergenic CR45653 + chr3R 25843823 intergenic CR45653 + chr3R_56_25840001 chr3R_25840001 RAL-303_100b 4606 chr3R 25848652 25848702 chr3R 25848766 25848816 19 114 32.5 38.0 35.2 0.5 164 chr3R 25848652 intergenic CR45657 + chr3R 25848734 intergenic CR45657 + chr3R 25848816 intergenic CR45657 + chr3R_19_25845001 chr3R_25845001 RAL-303_100b 4607 chr3R 25851475 25851534 chr3R 25851578 25851617 13 101 56.0 53.0 54.5 0.2 142 chr3R 25851475 intergenic CG5886 +,CG14545 - chr3R 25851546 intergenic CG5886 +,CG14545 - chr3R 25851617 intergenic CG5886 +,CG14545 - chr3R_13_25850001 chr3R_25850001 RAL-303_100b 4608 chr3R 25861806 25861835 chr3R 25861908 25861937 8 102 64.5 58.5 61.5 0.1 131 chr3R 25861806 intron CG5890 + chr3R 25861872 intron CG5890 + chr3R 25861937 intron CG5890 + chr3R_8_25860001 chr3R_25860001 RAL-303_100b 4609 chr3R 25871079 25871119 chr3R 25871239 25871273 9 155 50.5 48.0 49.2 0.2 194 chr3R 25871079 3` UTR CG5890 + chr3R 25871176 3` UTR CG5890 + chr3R 25871273 3` UTR CG5890 + chr3R_9_25870001 chr3R_25870001 RAL-303_100b 4610 chr3R 25904089 25904144 chr3R 25904353 25904406 15 261 48.0 42.0 45.0 0.3 317 chr3R 25904089 exon,intron CG31089 +,CR43259 - chr3R 25904248 3` UTR CR43259 - chr3R 25904406 3` UTR CR43259 - chr3R_15_25900001 chr3R_25900001 RAL-303_100b 4611 chr3R 25927483 25927522 chr3R 25927590 25927629 19 107 42.0 35.5 38.8 0.5 146 chr3R 25927483 intron CCAP-R - chr3R 25927556 intron CCAP-R - chr3R 25927629 intron CCAP-R - chr3R_19_25925001 chr3R_25925001 RAL-303_100b 4612 chr3R 25962027 25962073 chr3R 25962148 25962194 12 121 54.5 61.0 57.8 0.2 167 chr3R 25962027 5` UTR boss + chr3R 25962110 intron boss + chr3R 25962194 intron boss + chr3R_12_25960001 chr3R_25960001 RAL-303_100b 4613 chr3R 26010147 26010201 chr3R 26010249 26010303 41 99 47.0 52.5 49.8 0.8 156 chr3R 26010147 intergenic not near genes chr3R 26010225 intergenic not near genes chr3R 26010303 intergenic not near genes chr3R_41_26010001 chr3R_26010001 RAL-303_100b 4614 chr3R 26018662 26018687 chr3R 26018775 26018798 10 111 53.0 28.5 40.8 0.2 136 chr3R 26018662 3` UTR CR43643 - chr3R 26018730 3` UTR CR43643 - chr3R 26018798 3` UTR CR43643 - chr3R_10_26015001 chr3R_26015001 RAL-303_100b 4615 chr3R 26038338 26038397 chr3R 26038449 26038507 8 111 21.5 25.0 23.2 0.3 169 chr3R 26038338 intergenic E(spl)m7-HLH + chr3R 26038422 intergenic E(spl)m7-HLH + chr3R 26038507 intergenic E(spl)m7-HLH + chr3R_8_26035001 chr3R_26035001 RAL-303_100b 4616 chr3R 26038942 26038999 chr3R 26039104 26039161 29 161 32.5 28.5 30.5 0.9 219 chr3R 26038942 intergenic not near genes chr3R 26039052 intergenic not near genes chr3R 26039161 intergenic not near genes chr3R_29_26035001 chr3R_26035001 RAL-303_100b 4617 chr3R 26108799 26108855 chr3R 26117407 26117423 Tirant 17 8600 15.0 1.5 8.2 1.8 8624 chr3R 26108799 5` UTR CG31324 + chr3R 26113111 intron CG31324 + chr3R 26117423 intron CG31324 + chr3R_17_26110001 chr3R_26110001 RAL-303_100b 4618 chr3R 26122436 26122480 chr3R 26122537 26122541 46 98 15.5 20.5 18.0 2.4 105 chr3R 26122436 intron CG31324 + chr3R 26122488 intron CG31324 + chr3R 26122541 intron CG31324 + chr3R_46_26120001 chr3R_26120001 RAL-303_100b 4619 chr3R 26122968 26122988 chr3R 26123070 26123090 8 102 30.5 13.0 21.8 0.4 122 chr3R 26122968 intron CG31324 + chr3R 26123029 intron CG31324 + chr3R 26123090 intron CG31324 + chr3R_8_26120001 chr3R_26120001 RAL-303_100b 4620 chr3R 26126532 26126564 chr3R 26126643 26126675 11 111 58.5 58.5 58.5 0.2 143 chr3R 26126532 intron CG31324 + chr3R 26126604 intron CG31324 + chr3R 26126675 intron,5` UTR CG31324 +,CG14556 + chr3R_11_26125001 chr3R_26125001 RAL-303_100b 4621 chr3R 26140493 26140547 chr3R 26140627 26140685 13 136 53.0 63.0 58.0 0.2 192 chr3R 26140493 intergenic not near genes chr3R 26140589 intergenic not near genes chr3R 26140685 intergenic not near genes chr3R_13_26140001 chr3R_26140001 RAL-303_100b 4622 chr3R 26144686 26144725 chr3R 26144767 26144828 6 98 46.0 44.5 45.2 0.1 142 chr3R 26144686 intergenic not near genes chr3R 26144757 intergenic not near genes chr3R 26144828 intergenic not near genes chr3R_6_26140001 chr3R_26140001 RAL-303_100b 4623 chr3R 26152776 26152827 chr3R 26152887 26152938 27 110 46.5 42.5 44.5 0.6 162 chr3R 26152776 intergenic not near genes chr3R 26152857 intergenic not near genes chr3R 26152938 intergenic not near genes chr3R_27_26150001 chr3R_26150001 RAL-303_100b 4624 chr3R 26155397 26155446 chr3R 26155506 26155555 16 107 51.5 52.5 52.0 0.3 158 chr3R 26155397 intergenic not near genes chr3R 26155476 intergenic not near genes chr3R 26155555 intergenic not near genes chr3R_16_26155001 chr3R_26155001 RAL-303_100b 4625 chr3R 26206508 26206560 chr3R 26206622 26206674 11 110 60.5 59.5 60.0 0.2 166 chr3R 26206508 intron CR44320 + chr3R 26206591 intron CR44320 + chr3R 26206674 intron CR44320 + chr3R_11_26205001 chr3R_26205001 RAL-303_100b 4626 chr3R 26207659 26207701 chr3R 26207833 26207875 11 171 28.0 38.0 33.0 0.3 216 chr3R 26207659 intron CR44320 + chr3R 26207767 intron CR44320 + chr3R 26207875 intron CR44320 + chr3R_11_26205001 chr3R_26205001 RAL-303_100b 4627 chr3R 26235478 26235521 chr3R 26235570 26235628 21 101 45.0 49.5 47.2 0.4 150 chr3R 26235478 5` UTR CR42745 + chr3R 26235553 5` UTR CR42745 + chr3R 26235628 intron CR42745 + chr3R_21_26235001 chr3R_26235001 RAL-303_100b 4628 chr3R 26239808 26239824 chr3R 26240144 26240149 7 334 57.5 25.0 41.2 0.2 341 chr3R 26239808 intron CR42745 + chr3R 26239978 intron CR42745 + chr3R 26240149 intron CR42745 + chr3R_7_26235001 chr3R_26235001 RAL-303_100b 4629 chr3R 26239826 26239850 chr3R 26240142 26240186 11 332 50.0 24.0 37.0 0.3 360 chr3R 26239826 intron CR42745 + chr3R 26240006 intron CR42745 + chr3R 26240186 intron CR42745 + chr3R_11_26240001 chr3R_26240001 RAL-303_100b 4630 chr3R 26265792 26265847 chr3R 26265903 26265960 29 112 43.5 48.0 45.8 0.6 168 chr3R 26265792 intron CG6154 + chr3R 26265876 intron CG6154 + chr3R 26265960 intron CG6154 + chr3R_29_26265001 chr3R_26265001 RAL-303_100b 4631 chr3R 26292083 26292132 chr3R 26292188 26292237 38 104 15.0 19.5 17.2 2.1 154 chr3R 26292083 intergenic not near genes chr3R 26292160 intergenic not near genes chr3R 26292237 intergenic not near genes chr3R_38_26290001 chr3R_26290001 RAL-303_100b 4632 chr3R 26294692 26294749 chr3R 26294795 26294852 31 101 54.5 51.5 53.0 0.6 160 chr3R 26294692 intergenic not near genes chr3R 26294772 intergenic not near genes chr3R 26294852 intergenic not near genes chr3R_31_26290001 chr3R_26290001 RAL-303_100b 4633 chr3R 26301804 26301857 chr3R 26301910 26301963 27 105 38.0 38.5 38.2 0.7 159 chr3R 26301804 intergenic not near genes chr3R 26301884 intergenic not near genes chr3R 26301963 intergenic not near genes chr3R_27_26300001 chr3R_26300001 RAL-303_100b 4634 chr3R 26302093 26302146 chr3R 26302325 26302373 25 228 18.0 45.5 31.8 0.8 280 chr3R 26302093 intergenic not near genes chr3R 26302233 intergenic not near genes chr3R 26302373 intergenic not near genes chr3R_25_26300001 chr3R_26300001 RAL-303_100b 4635 chr3R 26307103 26307110 chr3R 26307249 26307256 5 146 35.0 28.0 31.5 0.2 153 chr3R 26307103 intergenic not near genes chr3R 26307180 intergenic not near genes chr3R 26307256 intergenic not near genes chr3R_5_26305001 chr3R_26305001 RAL-303_100b 4636 chr3R 26318598 26318624 chr3R 26318713 26318739 5 114 61.0 54.0 57.5 0.1 141 chr3R 26318598 5` UTR CG33970 + chr3R 26318668 5` UTR CG33970 + chr3R 26318739 5` UTR CG33970 + chr3R_5_26315001 chr3R_26315001 RAL-303_100b 4637 chr3R 26325341 26325388 chr3R 26325453 26325507 4 117 44.0 28.5 36.2 0.1 166 chr3R 26325341 intron CG33970 + chr3R 26325424 intron CG33970 + chr3R 26325507 intron CG33970 + chr3R_4_26325001 chr3R_26325001 RAL-303_100b 4638 chr3R 26325658 26325710 chr3R 26325771 26325823 19 108 58.5 53.5 56.0 0.3 165 chr3R 26325658 intron CG33970 + chr3R 26325740 intron CG33970 + chr3R 26325823 intron CG33970 + chr3R_19_26325001 chr3R_26325001 RAL-303_100b 4639 chr3R 26342660 26342713 chr3R 26342828 26342881 10 168 52.0 53.0 52.5 0.2 221 chr3R 26342660 intron CG33970 + chr3R 26342770 intron CG33970 + chr3R 26342881 intron CG33970 + chr3R_10_26340001 chr3R_26340001 RAL-303_100b 4640 chr3R 26349241 26349255 chr3R 26349362 26349362 4 120 10.5 0.0 5.2 0.6 121 chr3R 26349241 intron CG33970 + chr3R 26349302 intron CG33970 + chr3R 26349362 intron CG33970 + chr3R_4_26345001 chr3R_26345001 RAL-303_100b 4641 chr3R 26365077 26365139 chr3R 26365176 26365248 31 106 23.0 24.5 23.8 1.2 171 chr3R 26365077 intergenic not near genes chr3R 26365162 intergenic not near genes chr3R 26365248 intergenic not near genes chr3R_31_26365001 chr3R_26365001 RAL-303_100b 4642 chr3R 26376305 26376356 chr3R 26385485 26385501 roo 65 9181 17.0 12.5 14.8 4.1 9196 chr3R 26376305 intergenic not near genes chr3R 26380903 intergenic not near genes chr3R 26385501 intergenic not near genes chr3R_65_26380001 chr3R_26380001 RAL-303_100b 4643 chr3R 26387308 26387334 chr3R 26387393 26387436 6 96 60.5 58.5 59.5 0.1 128 chr3R 26387308 intergenic not near genes chr3R 26387372 intergenic not near genes chr3R 26387436 intergenic not near genes chr3R_6_26385001 chr3R_26385001 RAL-303_100b 4644 chr3R 26405904 26405940 chr3R 26406005 26406041 8 100 15.5 22.0 18.8 0.4 137 chr3R 26405904 intergenic not near genes chr3R 26405972 intergenic not near genes chr3R 26406041 intergenic not near genes chr3R_8_26405001 chr3R_26405001 RAL-303_100b 4645 chr3R 26421727 26421734 chr3R 26421833 26421840 5 106 53.0 25.5 39.2 0.1 113 chr3R 26421727 intergenic not near genes chr3R 26421784 intergenic not near genes chr3R 26421840 intergenic not near genes chr3R_5_26420001 chr3R_26420001 RAL-303_100b 4646 chr3R 26421735 26421786 chr3R 26421831 26421892 41 103 32.5 26.5 29.5 1.3 157 chr3R 26421735 intergenic not near genes chr3R 26421814 intergenic not near genes chr3R 26421892 intergenic not near genes chr3R_41_26420001 chr3R_26420001 RAL-303_100b 4647 chr3R 26510481 26510534 chr3R 26519566 26519614 roo 44 9083 10.5 13.5 12.0 3.4 9133 chr3R 26510481 intron plum - chr3R 26515048 intron plum - chr3R 26519614 intron,5` UTR plum -,CR45226 + chr3R_44_26515001 chr3R_26515001 RAL-303_100b 4648 chr3R 26531643 26531691 chr3R 26531762 26531816 8 120 50.5 60.0 55.2 0.1 173 chr3R 26531643 intron plum - chr3R 26531730 intron plum - chr3R 26531816 intron plum - chr3R_8_26530001 chr3R_26530001 RAL-303_100b 4649 chr3R 26540975 26541032 chr3R 26541080 26541136 17 102 39.0 39.0 39.0 0.4 161 chr3R 26540975 intron scrib + chr3R 26541056 intron scrib + chr3R 26541136 intron scrib + chr3R_17_26540001 chr3R_26540001 RAL-303_100b 4650 chr3R 26542021 26542077 chr3R 26542137 26542193 34 108 23.5 23.0 23.2 1.4 172 chr3R 26542021 intron scrib + chr3R 26542107 intron scrib + chr3R 26542193 intron scrib + chr3R_34_26540001 chr3R_26540001 RAL-303_100b 4651 chr3R 26558300 26558360 chr3R 26565638 26565682 Stalker4 45 7332 9.5 14.5 12.0 3.5 7382 chr3R 26558300 intron scrib + chr3R 26561991 intron scrib + chr3R 26565682 intron scrib + chr3R_45_26560001 chr3R_26560001 RAL-303_100b 4652 chr3R 26604462 26604514 chr3R 26604566 26604589 15 87 39.5 39.0 39.2 0.4 127 chr3R 26604462 intergenic scrib + chr3R 26604526 intergenic scrib + chr3R 26604589 intergenic not near genes chr3R_15_26600001 chr3R_26600001 RAL-303_100b 4653 chr3R 26641611 26641664 chr3R 26641723 26641761 35 107 38.5 40.5 39.5 0.9 150 chr3R 26641611 intergenic not near genes chr3R 26641686 intergenic not near genes chr3R 26641761 intergenic not near genes chr3R_35_26640001 chr3R_26640001 RAL-303_100b 4654 chr3R 26642707 26642712 chr3R 26643125 26643130 jockey 4 418 63.0 18.5 40.8 0.1 423 chr3R 26642707 intergenic not near genes chr3R 26642918 intergenic not near genes chr3R 26643130 intergenic not near genes chr3R_4_26640001 chr3R_26640001 RAL-303_100b 4655 chr3R 26642713 26642761 chr3R 26643124 26643180 jockey 25 414 34.5 18.0 26.2 0.9 467 chr3R 26642713 intergenic not near genes chr3R 26642946 intergenic not near genes chr3R 26643180 intergenic not near genes chr3R_25_26640001 chr3R_26640001 RAL-303_100b 4656 chr3R 26669642 26669686 chr3R 26669749 26669793 10 105 38.5 46.5 42.5 0.2 151 chr3R 26669642 intron beat-VII - chr3R 26669718 intron beat-VII - chr3R 26669793 intron beat-VII - chr3R_10_26665001 chr3R_26665001 RAL-303_100b 4657 chr3R 26703242 26703293 chr3R 26703364 26703410 8 120 73.5 56.5 65.0 0.1 168 chr3R 26703242 intron amon - chr3R 26703326 intron amon - chr3R 26703410 intron amon - chr3R_8_26700001 chr3R_26700001 RAL-303_100b 4658 chr3R 26710804 26710854 chr3R 26710912 26710960 27 108 46.5 33.5 40.0 0.7 156 chr3R 26710804 intron amon - chr3R 26710882 intron amon - chr3R 26710960 intron amon - chr3R_27_26710001 chr3R_26710001 RAL-303_100b 4659 chr3R 26713847 26713860 chr3R 26713950 26713962 6 106 38.5 42.5 40.5 0.1 115 chr3R 26713847 5` UTR amon - chr3R 26713904 5` UTR amon - chr3R 26713962 5` UTR amon - chr3R_6_26710001 chr3R_26710001 RAL-303_100b 4660 chr3R 26713861 26713893 chr3R 26713948 26713973 18 101 34.0 41.5 37.8 0.5 112 chr3R 26713861 5` UTR amon - chr3R 26713917 5` UTR amon - chr3R 26713973 5` UTR amon - chr3R_18_26710001 chr3R_26710001 RAL-303_100b 4661 chr3R 26740266 26740317 chr3R 26740367 26740418 9 100 60.0 58.0 59.0 0.1 152 chr3R 26740266 intergenic not near genes chr3R 26740342 intergenic not near genes chr3R 26740418 intergenic not near genes chr3R_9_26740001 chr3R_26740001 RAL-303_100b 4662 chr3R 26770215 26770274 chr3R 26770317 26770366 59 100 32.0 25.5 28.8 2.0 151 chr3R 26770215 intergenic CR45563 + chr3R 26770290 intergenic CR45563 + chr3R 26770366 intergenic not near genes chr3R_59_26770001 chr3R_26770001 RAL-303_100b 4663 chr3R 26810526 26810584 chr3R 26811036 26811083 roo 41 509 11.0 18.0 14.5 2.6 557 chr3R 26810526 intron Tl + chr3R 26810804 intron Tl + chr3R 26811083 intron Tl + chr3R_41_26810001 chr3R_26810001 RAL-303_100b 4664 chr3R 26816718 26816760 chr3R 26816836 26816863 19 114 25.0 22.0 23.5 0.8 145 chr3R 26816718 intron Tl + chr3R 26816790 intron Tl + chr3R 26816863 intron Tl + chr3R_19_26815001 chr3R_26815001 RAL-303_100b 4665 chr3R 26824283 26824330 chr3R 26824425 26824472 9 135 51.0 54.0 52.5 0.2 189 chr3R 26824283 intron Tl + chr3R 26824378 intron Tl + chr3R 26824472 intron Tl + chr3R_9_26820001 chr3R_26820001 RAL-303_100b 4666 chr3R 26825044 26825077 chr3R 26825145 26825178 9 98 51.0 49.5 50.2 0.2 134 chr3R 26825044 intron Tl + chr3R 26825111 intron Tl + chr3R 26825178 intron Tl + chr3R_9_26825001 chr3R_26825001 RAL-303_100b 4667 chr3R 26827338 26827393 chr3R 26827441 26827496 15 100 39.5 41.5 40.5 0.4 158 chr3R 26827338 intron Tl + chr3R 26827417 intron Tl + chr3R 26827496 intron Tl + chr3R_15_26825001 chr3R_26825001 RAL-303_100b 4668 chr3R 26845549 26845597 chr3R 26845654 26845702 13 104 69.0 74.0 71.5 0.2 153 chr3R 26845549 intron Lerp - chr3R 26845626 intron Lerp - chr3R 26845702 intron Lerp - chr3R_13_26845001 chr3R_26845001 RAL-303_100b 4669 chr3R 26888170 26888210 chr3R 26888272 26888306 10 97 50.5 42.5 46.5 0.2 136 chr3R 26888170 intron T48 + chr3R 26888238 intron T48 + chr3R 26888306 intron T48 + chr3R_10_26885001 chr3R_26885001 RAL-303_100b 4670 chr3R 26908013 26908061 chr3R 26908125 26908183 17 117 64.5 65.5 65.0 0.3 170 chr3R 26908013 intron T48 + chr3R 26908098 intron T48 + chr3R 26908183 intron T48 + chr3R_17_26905001 chr3R_26905001 RAL-303_100b 4671 chr3R 26927976 26927987 chr3R 26928306 26928352 7 354 73.5 58.5 66.0 0.1 376 chr3R 26927976 intron sda + chr3R 26928164 intron sda + chr3R 26928352 intron sda + chr3R_7_26925001 chr3R_26925001 RAL-303_100b 4672 chr3R 26960706 26960766 chr3R 26960820 26960880 47 112 26.0 20.0 23.0 2.0 174 chr3R 26960706 intergenic Tsp97E - chr3R 26960793 intergenic Tsp97E - chr3R 26960880 intergenic Tsp97E - chr3R_47_26960001 chr3R_26960001 RAL-303_100b 4673 chr3R 27007381 27007438 chr3R 27016541 27016568 roo 57 9155 15.0 13.5 14.2 3.8 9187 chr3R 27007381 intron RYa-R + chr3R 27011974 intron RYa-R + chr3R 27016568 intron RYa-R + chr3R_57_27010001 chr3R_27010001 RAL-303_100b 4674 chr3R 27027657 27027704 chr3R 27027766 27027811 17 107 15.5 17.0 16.2 1.0 154 chr3R 27027657 intron RYa-R + chr3R 27027734 intron RYa-R + chr3R 27027811 intron RYa-R + chr3R_17_27025001 chr3R_27025001 RAL-303_100b 4675 chr3R 27028697 27028755 chr3R 27028801 27028859 55 100 10.5 12.5 11.5 4.4 162 chr3R 27028697 intron RYa-R + chr3R 27028778 intron RYa-R + chr3R 27028859 intron RYa-R + chr3R_55_27025001 chr3R_27025001 RAL-303_100b 4676 chr3R 27030196 27030331 chr3R 27030350 27030622 44 181 3.5 4.5 4.0 8.8 426 chr3R 27030196 intron RYa-R + chr3R 27030409 intron RYa-R + chr3R 27030622 intron RYa-R + chr3R_44_27030001 chr3R_27030001 RAL-303_100b 4677 chr3R 27044294 27044350 chr3R 27044619 27044675 20 325 42.5 40.5 41.5 0.5 381 chr3R 27044294 intron RYa-R + chr3R 27044484 intron RYa-R + chr3R 27044675 intron RYa-R + chr3R_20_27040001 chr3R_27040001 RAL-303_100b 4678 chr3R 27051636 27051695 chr3R 27051752 27051809 41 114 12.0 8.5 10.2 3.7 173 chr3R 27051636 intron RYa-R + chr3R 27051722 intron RYa-R + chr3R 27051809 intron RYa-R + chr3R_41_27050001 chr3R_27050001 RAL-303_100b 4679 chr3R 27077075 27077096 chr3R 27077180 27077196 10 102 40.0 25.0 32.5 0.3 121 chr3R 27077075 intron CG14257 + chr3R 27077136 intron CG14257 + chr3R 27077196 intron CG14257 + chr3R_10_27075001 chr3R_27075001 RAL-303_100b 4680 chr3R 27077099 27077128 chr3R 27077178 27077221 17 98 26.0 25.5 25.8 0.6 122 chr3R 27077099 intron CG14257 + chr3R 27077160 intron CG14257 + chr3R 27077221 intron CG14257 + chr3R_17_27075001 chr3R_27075001 RAL-303_100b 4681 chr3R 27140488 27140547 chr3R 27148123 27148162 412 59 7632 15.0 19.0 17.0 3.3 7674 chr3R 27140488 intron CG6051 - chr3R 27144325 intron CG6051 - chr3R 27148162 intron CG6051 - chr3R_59_27140001 chr3R_27140001 RAL-303_100b 4682 chr3R 27153457 27153507 chr3R 27153560 27153610 28 102 34.0 34.5 34.2 0.8 153 chr3R 27153457 intron Men-b + chr3R 27153534 intron Men-b + chr3R 27153610 intron Men-b + chr3R_28_27150001 chr3R_27150001 RAL-303_100b 4683 chr3R 27192658 27192675 chr3R 27192761 27192763 4 99 46.0 28.0 37.0 0.1 105 chr3R 27192658 intron Ser - chr3R 27192710 intron Ser - chr3R 27192763 intron Ser - chr3R_4_27190001 chr3R_27190001 RAL-303_100b 4684 chr3R 27193060 27193092 chr3R 27193283 27193315 19 222 55.0 11.0 33.0 0.6 255 chr3R 27193060 intron Ser - chr3R 27193188 intron Ser - chr3R 27193315 intron Ser - chr3R_19_27190001 chr3R_27190001 RAL-303_100b 4685 chr3R 27195559 27195575 chr3R 27195670 27195685 8 110 69.0 67.0 68.0 0.1 126 chr3R 27195559 intergenic not near genes chr3R 27195622 intergenic not near genes chr3R 27195685 intergenic not near genes chr3R_8_27195001 chr3R_27195001 RAL-303_100b 4686 chr3R 27195576 27195610 chr3R 27195664 27195709 15 103 65.0 67.5 66.2 0.2 133 chr3R 27195576 intergenic not near genes chr3R 27195642 intergenic not near genes chr3R 27195709 intergenic not near genes chr3R_15_27195001 chr3R_27195001 RAL-303_100b 4687 chr3R 27225559 27225612 chr3R 27225675 27225728 11 114 32.0 19.0 25.5 0.4 169 chr3R 27225559 intergenic not near genes chr3R 27225644 intergenic not near genes chr3R 27225728 intergenic not near genes chr3R_11_27225001 chr3R_27225001 RAL-303_100b 4688 chr3R 27292266 27292302 chr3R 27292392 27292429 9 133 47.0 57.5 52.2 0.2 163 chr3R 27292266 intergenic CG3348 - chr3R 27292348 intergenic CG3348 - chr3R 27292429 intergenic CG3348 - chr3R_9_27290001 chr3R_27290001 RAL-303_100b 4689 chr3R 27300482 27300534 chr3R 27300587 27300639 27 104 39.5 43.5 41.5 0.6 157 chr3R 27300482 intron CG3339 - chr3R 27300560 intron CG3339 - chr3R 27300639 intron CG3339 - chr3R_27_27300001 chr3R_27300001 RAL-303_100b 4690 chr3R 27300841 27300875 chr3R 27300953 27300974 26 113 27.0 31.0 29.0 0.9 133 chr3R 27300841 intron CG3339 - chr3R 27300908 intron CG3339 - chr3R 27300974 intron CG3339 - chr3R_26_27300001 chr3R_27300001 RAL-303_100b 4691 chr3R 27303529 27303580 chr3R 27303637 27303683 6 108 42.0 28.5 35.2 0.2 154 chr3R 27303529 intron CG3339 - chr3R 27303606 intron CG3339 - chr3R 27303683 intron CG3339 - chr3R_6_27300001 chr3R_27300001 RAL-303_100b 4692 chr3R 27315970 27316013 chr3R 27316071 27316114 15 100 40.5 44.5 42.5 0.3 144 chr3R 27315970 intron CG3339 - chr3R 27316042 intron CG3339 - chr3R 27316114 exon CG3339 - chr3R_15_27315001 chr3R_27315001 RAL-303_100b 4693 chr3R 27329448 27329502 chr3R 27329550 27329604 37 101 9.5 10.0 9.8 3.4 156 chr3R 27329448 intergenic CG3330 - chr3R 27329526 intergenic CG3330 - chr3R 27329604 intergenic CG3330 - chr3R_37_27325001 chr3R_27325001 RAL-303_100b 4694 chr3R 27342771 27342784 chr3R 27351377 27351390 Tirant 13 8602 36.5 22.0 29.2 0.4 8619 chr3R 27342771 intron CG42534 + chr3R 27347080 intron CG42534 + chr3R 27351390 intron CG42534 + chr3R_13_27345001 chr3R_27345001 RAL-303_100b 4695 chr3R 27342786 27342825 chr3R 27351372 27351425 Tirant 38 8601 13.5 19.5 16.5 2.2 8639 chr3R 27342786 intron CG42534 + chr3R 27347106 intron CG42534 + chr3R 27351425 intron CG42534 + chr3R_38_27345001 chr3R_27345001 RAL-303_100b 4696 chr3R 27377446 27377500 chr3R 27377559 27377610 22 107 31.5 29.5 30.5 0.7 164 chr3R 27377446 3` UTR side - chr3R 27377528 3` UTR side - chr3R 27377610 3` UTR side - chr3R_22_27375001 chr3R_27375001 RAL-303_100b 4697 chr3R 27398547 27398565 chr3R 27398648 27398653 5 98 29.0 17.5 23.2 0.2 106 chr3R 27398547 intron side - chr3R 27398600 intron side - chr3R 27398653 intron side - chr3R_5_27395001 chr3R_27395001 RAL-303_100b 4698 chr3R 27445223 27445277 chr3R 27445325 27445379 35 99 21.5 28.5 25.0 1.3 156 chr3R 27445223 intergenic not near genes chr3R 27445301 intergenic not near genes chr3R 27445379 intergenic not near genes chr3R_35_27445001 chr3R_27445001 RAL-303_100b 4699 chr3R 27452563 27452610 chr3R 27452768 27452815 28 205 33.5 33.0 33.2 0.8 252 chr3R 27452563 intergenic not near genes chr3R 27452689 intergenic not near genes chr3R 27452815 intergenic not near genes chr3R_28_27450001 chr3R_27450001 RAL-303_100b 4700 chr3R 27483089 27483105 chr3R 27483242 27483248 6 151 69.5 68.5 69.0 0.1 159 chr3R 27483089 intergenic Cyp6a18 + chr3R 27483168 intergenic Cyp6a18 + chr3R 27483248 intergenic Cyp6a18 + chr3R_6_27480001 chr3R_27480001 RAL-303_100b 4701 chr3R 27483115 27483141 chr3R 27483237 27483243 8 132 65.5 67.5 66.5 0.1 128 chr3R 27483115 intergenic Cyp6a18 + chr3R 27483179 intergenic Cyp6a18 + chr3R 27483243 intergenic Cyp6a18 + chr3R_8_27480001 chr3R_27480001 RAL-303_100b 4702 chr3R 27492352 27492409 chr3R 27492464 27492512 42 107 13.5 6.0 9.8 3.9 160 chr3R 27492352 intergenic not near genes chr3R 27492432 intergenic not near genes chr3R 27492512 intergenic not near genes chr3R_42_27490001 chr3R_27490001 RAL-303_100b 4703 chr3R 27496566 27496604 chr3R 27496696 27496734 46 125 26.5 19.5 23.0 1.9 168 chr3R 27496566 intergenic not near genes chr3R 27496650 intergenic not near genes chr3R 27496734 intergenic not near genes chr3R_46_27495001 chr3R_27495001 RAL-303_100b 4704 chr3R 27517424 27517462 chr3R 27517538 27517592 12 125 50.5 50.5 50.5 0.2 168 chr3R 27517424 intergenic CG13972 - chr3R 27517508 intergenic CG13972 - chr3R 27517592 intergenic CG13972 - chr3R_12_27515001 chr3R_27515001 RAL-303_100b 4705 chr3R 27521137 27521186 chr3R 27530368 27530380 roo 19 9232 11.5 4.5 8.0 2.1 9243 chr3R 27521137 intron CG12885 + chr3R 27525758 intron CG12885 + chr3R 27530380 intron CG12885 + chr3R_19_27525001 chr3R_27525001 RAL-303_100b 4706 chr3R 27535763 27535808 chr3R 27535880 27535891 16 115 62.0 61.5 61.8 0.3 128 chr3R 27535763 intergenic CR44289 - chr3R 27535827 intergenic CR44289 - chr3R 27535891 3` UTR CR44289 - chr3R_16_27535001 chr3R_27535001 RAL-303_100b 4707 chr3R 27619282 27619295 chr3R 27619385 27619398 9 103 54.5 46.0 50.2 0.2 116 chr3R 27619282 intron Tusp + chr3R 27619340 intron Tusp + chr3R 27619398 intron Tusp + chr3R_9_27615001 chr3R_27615001 RAL-303_100b 4708 chr3R 27627060 27627116 chr3R 27627187 27627228 36 123 24.5 18.5 21.5 1.6 168 chr3R 27627060 intron Tusp + chr3R 27627144 intron Tusp + chr3R 27627228 intron Tusp + chr3R_36_27625001 chr3R_27625001 RAL-303_100b 4709 chr3R 27634076 27634123 chr3R 27634204 27634241 8 127 68.5 65.5 67.0 0.1 165 chr3R 27634076 3` UTR Tusp + chr3R 27634158 3` UTR Tusp + chr3R 27634241 3` UTR Tusp + chr3R_8_27630001 chr3R_27630001 RAL-303_100b 4710 chr3R 27643982 27643993 chr3R 27644098 27644109 4 116 49.5 24.0 36.8 0.1 127 chr3R 27643982 intron tau - chr3R 27644046 intron tau - chr3R 27644109 intron tau - chr3R_4_27640001 chr3R_27640001 RAL-303_100b 4711 chr3R 27648562 27648856 chr3R 27648670 27648943 15 101 51.5 25.5 38.5 0.4 381 chr3R 27648562 intron tau - chr3R 27648752 intron tau - chr3R 27648943 intron tau - chr3R_15_27645001 chr3R_27645001 RAL-303_100b 4712 chr3R 27705335 27705383 chr3R 27705440 27705488 15 102 59.0 53.0 56.0 0.3 153 chr3R 27705335 exon CG12428 - chr3R 27705412 intron CG12428 - chr3R 27705488 exon CG12428 - chr3R_15_27705001 chr3R_27705001 RAL-303_100b 4713 chr3R 27706752 27706810 chr3R 27706854 27706883 49 98 17.5 9.5 13.5 3.4 131 chr3R 27706752 intergenic CG12428 -,CG12877 + chr3R 27706818 intergenic CG12428 -,CG12877 + chr3R 27706883 intergenic CG12428 -,CG12877 + chr3R_49_27705001 chr3R_27705001 RAL-303_100b 4714 chr3R 27716509 27716558 chr3R 27716619 27716699 14 124 61.0 43.0 52.0 0.3 190 chr3R 27716509 intergenic not near genes chr3R 27716604 intergenic not near genes chr3R 27716699 intergenic not near genes chr3R_14_27715001 chr3R_27715001 RAL-303_100b 4715 chr3R 27725538 27725592 chr3R 27731005 27731054 I-element 34 5465 18.0 8.0 13.0 2.4 5516 chr3R 27725538 intergenic not near genes chr3R 27728296 intergenic not near genes chr3R 27731054 intergenic not near genes chr3R_34_27725001 chr3R_27725001 RAL-303_100b 4716 chr3R 27731171 27731198 chr3R 27731277 27731304 16 103 49.5 51.0 50.2 0.3 133 chr3R 27731171 intergenic not near genes chr3R 27731238 intergenic not near genes chr3R 27731304 intergenic not near genes chr3R_16_27730001 chr3R_27730001 RAL-303_100b 4717 chr3R 27731201 27731226 chr3R 27731276 27731332 14 99 41.5 50.0 45.8 0.3 131 chr3R 27731201 intergenic not near genes chr3R 27731266 intergenic not near genes chr3R 27731332 intergenic not near genes chr3R_14_27730001 chr3R_27730001 RAL-303_100b 4718 chr3R 27735177 27735226 chr3R 27735360 27735408 7 186 52.5 36.0 44.2 0.2 231 chr3R 27735177 intergenic not near genes chr3R 27735292 intergenic not near genes chr3R 27735408 intergenic not near genes chr3R_7_27735001 chr3R_27735001 RAL-303_100b 4719 chr3R 27779246 27779287 chr3R 27779348 27779392 33 101 10.0 23.0 16.5 1.9 146 chr3R 27779246 exon CG34353 - chr3R 27779319 intron CG34353 - chr3R 27779392 intron CG34353 - chr3R_33_27775001 chr3R_27775001 RAL-303_100b 4720 chr3R 27789054 27789113 chr3R 27789156 27789215 24 95 40.5 40.0 40.2 0.6 161 chr3R 27789054 exon CG34353 - chr3R 27789134 intron CG34353 - chr3R 27789215 intron CG34353 - chr3R_24_27785001 chr3R_27785001 RAL-303_100b 4721 chr3R 27791617 27791646 chr3R 27794792 27794811 Rt1c 19 3166 38.5 31.0 34.8 0.5 3194 chr3R 27791617 intron CG34353 - chr3R 27793214 intron CG34353 - chr3R 27794811 intron CG34353 - chr3R_19_27790001 chr3R_27790001 RAL-303_100b 4722 chr3R 27799916 27799964 chr3R 27800018 27800066 65 105 14.5 14.5 14.5 4.2 150 chr3R 27799916 intron CG34353 - chr3R 27799991 intron CG34353 - chr3R 27800066 intron CG34353 - chr3R_65_27795001 chr3R_27795001 RAL-303_100b 4723 chr3R 27812405 27812455 chr3R 27812507 27812557 12 100 43.0 57.0 50.0 0.2 152 chr3R 27812405 intron CG34353 - chr3R 27812481 intron CG34353 - chr3R 27812557 intron CG34353 - chr3R_12_27810001 chr3R_27810001 RAL-303_100b 4724 chr3R 27840253 27840266 chr3R 27840411 27840424 5 158 62.0 67.5 64.8 0.1 171 chr3R 27840253 intron CG34353 - chr3R 27840338 intron CG34353 - chr3R 27840424 intron CG34353 - chr3R_5_27840001 chr3R_27840001 RAL-303_100b 4725 chr3R 27841093 27841139 chr3R 27841186 27841245 16 102 66.0 55.5 60.8 0.3 152 chr3R 27841093 intron CG34353 - chr3R 27841169 intron CG34353 - chr3R 27841245 intron CG34353 - chr3R_16_27840001 chr3R_27840001 RAL-303_100b 4726 chr3R 27856734 27856791 chr3R 27858242 27858242 hopper2 53 1504 25.0 19.0 22.0 2.3 1508 chr3R 27856734 intron CG34353 - chr3R 27857488 intron CG34353 - chr3R 27858242 intron CG34353 - chr3R_53_27855001 chr3R_27855001 RAL-303_100b 4727 chr3R 27862927 27862984 chr3R 27868258 27868287 Transpac 31 5322 7.5 13.5 10.5 2.7 5360 chr3R 27862927 intron CG34353 - chr3R 27865607 intron CG34353 - chr3R 27868287 intron CG34353 - chr3R_31_27865001 chr3R_27865001 RAL-303_100b 4728 chr3R 27871035 27871073 chr3R 27871156 27871193 15 124 49.0 42.0 45.5 0.3 158 chr3R 27871035 intron CG34353 - chr3R 27871114 intron CG34353 - chr3R 27871193 intron CG34353 - chr3R_15_27870001 chr3R_27870001 RAL-303_100b 4729 chr3R 27871074 27871085 chr3R 27871155 27871211 10 112 45.0 43.0 44.0 0.2 137 chr3R 27871074 intron CG34353 - chr3R 27871142 intron CG34353 - chr3R 27871211 intron CG34353 - chr3R_10_27870001 chr3R_27870001 RAL-303_100b 4730 chr3R 27875676 27875729 chr3R 27882756 27882809 297 39 7078 14.0 20.0 17.0 2.2 7133 chr3R 27875676 intron CG34353 - chr3R 27879242 intron CG34353 - chr3R 27882809 intron CG34353 - chr3R_39_27875001 chr3R_27875001 RAL-303_100b 4731 chr3R 27900429 27900484 chr3R 27900546 27900579 10 114 43.0 36.0 39.5 0.2 150 chr3R 27900429 intron CG34353 - chr3R 27900504 intron CG34353 - chr3R 27900579 intron CG34353 - chr3R_10_27900001 chr3R_27900001 RAL-303_100b 4732 chr3R 27970816 27970824 chr3R 27970926 27970929 6 112 50.5 51.5 51.0 0.1 113 chr3R 27970816 intron betaTub97EF - chr3R 27970872 intron betaTub97EF - chr3R 27970929 intron betaTub97EF - chr3R_6_27970001 chr3R_27970001 RAL-303_100b 4733 chr3R 27973834 27973882 chr3R 27973940 27973988 13 105 56.0 60.0 58.0 0.2 154 chr3R 27973834 intron betaTub97EF - chr3R 27973911 intron betaTub97EF - chr3R 27973988 intron betaTub97EF - chr3R_13_27970001 chr3R_27970001 RAL-303_100b 4734 chr3R 27985916 27985962 chr3R 27986079 27986129 31 166 47.5 43.5 45.5 0.7 213 chr3R 27985916 intron betaTub97EF - chr3R 27986022 intron betaTub97EF - chr3R 27986129 intron betaTub97EF - chr3R_31_27985001 chr3R_27985001 RAL-303_100b 4735 chr3R 27997905 27997964 chr3R 27998013 27998060 31 100 39.0 39.0 39.0 0.8 155 chr3R 27997905 intergenic not near genes chr3R 27997982 intergenic not near genes chr3R 27998060 intergenic not near genes chr3R_31_27995001 chr3R_27995001 RAL-303_100b 4736 chr3R 28068478 28068524 chr3R 28073939 28073991 I-element 32 5464 2.0 17.0 9.5 3.0 5513 chr3R 28068478 intron CG34362 + chr3R 28071234 intron CG34362 + chr3R 28073991 intron CG34362 + chr3R_32_28070001 chr3R_28070001 RAL-303_100b 4737 chr3R 28097657 28097666 chr3R 28097789 28097793 4 131 55.0 50.0 52.5 0.1 136 chr3R 28097657 intergenic not near genes chr3R 28097725 intergenic not near genes chr3R 28097793 intergenic not near genes chr3R_4_28095001 chr3R_28095001 RAL-303_100b 4738 chr3R 28118830 28118877 chr3R 28118936 28118983 19 103 50.5 55.5 53.0 0.4 153 chr3R 28118830 intergenic not near genes chr3R 28118906 intergenic not near genes chr3R 28118983 intergenic not near genes chr3R_19_28115001 chr3R_28115001 RAL-303_100b 4739 chr3R 28132472 28132521 chr3R 28132573 28132618 20 96 42.0 38.5 40.2 0.5 146 chr3R 28132472 intergenic not near genes chr3R 28132545 intergenic not near genes chr3R 28132618 intergenic not near genes chr3R_20_28130001 chr3R_28130001 RAL-303_100b 4740 chr3R 28137671 28137715 chr3R 28137768 28137820 20 100 42.5 43.0 42.8 0.5 149 chr3R 28137671 intergenic not near genes chr3R 28137746 intergenic not near genes chr3R 28137820 intergenic not near genes chr3R_20_28135001 chr3R_28135001 RAL-303_100b 4741 chr3R 28172866 28172992 chr3R 28173034 28173175 6 179 28.0 30.5 29.2 0.2 309 chr3R 28172866 intron CG34354 + chr3R 28173020 intron CG34354 + chr3R 28173175 intron CG34354 + chr3R_6_28170001 chr3R_28170001 RAL-303_100b 4742 chr3R 28173648 28173650 chr3R 28181103 28181105 mdg1 6 7455 37.0 15.0 26.0 0.2 7457 chr3R 28173648 intron CG34354 + chr3R 28177376 intron CG34354 + chr3R 28181105 intron CG34354 + chr3R_6_28175001 chr3R_28175001 RAL-303_100b 4743 chr3R 28173654 28173684 chr3R 28181102 28181139 mdg1 26 7452 18.0 13.5 15.8 1.5 7485 chr3R 28173654 intron CG34354 + chr3R 28177396 intron CG34354 + chr3R 28181139 intron CG34354 + chr3R_26_28175001 chr3R_28175001 RAL-303_100b 4744 chr3R 28173686 28173696 chr3R 28181100 28181151 mdg1 17 7451 12.5 12.5 12.5 1.3 7465 chr3R 28173686 intron CG34354 + chr3R 28177418 intron CG34354 + chr3R 28181151 intron CG34354 + chr3R_17_28175001 chr3R_28175001 RAL-303_100b 4745 chr3R 28197990 28198037 chr3R 28198101 28198148 5 111 54.0 43.5 48.8 0.1 158 chr3R 28197990 intron CG34354 + chr3R 28198069 intron CG34354 + chr3R 28198148 intron CG34354 + chr3R_5_28195001 chr3R_28195001 RAL-303_100b 4746 chr3R 28215791 28215848 chr3R 28215893 28215917 13 93 57.0 56.5 56.8 0.2 126 chr3R 28215791 intron CG34354 + chr3R 28215854 intron CG34354 + chr3R 28215917 intron CG34354 + chr3R_13_28215001 chr3R_28215001 RAL-303_100b 4747 chr3R 28223731 28223773 chr3R 28223842 28223857 6 109 63.5 68.5 66.0 0.1 126 chr3R 28223731 intron CG34354 + chr3R 28223794 intron CG34354 + chr3R 28223857 intron CG34354 + chr3R_6_28220001 chr3R_28220001 RAL-303_100b 4748 chr3R 28253316 28253328 chr3R 28255851 28255863 jockey 12 2533 36.0 11.5 23.8 0.5 2547 chr3R 28253316 intergenic not near genes chr3R 28254590 intergenic not near genes chr3R 28255863 intergenic not near genes chr3R_12_28250001 chr3R_28250001 RAL-303_100b 4749 chr3R 28253329 28253368 chr3R 28255847 28255903 jockey 36 2529 15.5 10.0 12.8 2.6 2574 chr3R 28253329 intergenic not near genes chr3R 28254616 intergenic not near genes chr3R 28255903 intergenic not near genes chr3R_36_28250001 chr3R_28250001 RAL-303_100b 4750 chr3R 28282970 28283015 chr3R 28283624 28283669 9 651 75.0 74.0 74.5 0.1 699 chr3R 28282970 exon CG34436 + chr3R 28283320 exon CG34436 + chr3R 28283669 intergenic CG34437 +,CG34436 + chr3R_9_28280001 chr3R_28280001 RAL-303_100b 4751 chr3R 28302081 28302130 chr3R 28302545 28302583 jockey 26 460 12.0 23.5 17.8 1.4 502 chr3R 28302081 intergenic not near genes chr3R 28302332 intergenic not near genes chr3R 28302583 intergenic not near genes chr3R_26_28300001 chr3R_28300001 RAL-303_100b 4752 chr3R 28306624 28306675 chr3R 28306733 28306784 19 107 58.5 59.5 59.0 0.3 160 chr3R 28306624 intergenic not near genes chr3R 28306704 intergenic not near genes chr3R 28306784 intergenic not near genes chr3R_19_28305001 chr3R_28305001 RAL-303_100b 4753 chr3R 28308051 28308082 chr3R 28308153 28308157 11 99 55.5 35.0 45.2 0.2 106 chr3R 28308051 intergenic not near genes chr3R 28308104 intergenic not near genes chr3R 28308157 intergenic not near genes chr3R_11_28305001 chr3R_28305001 RAL-303_100b 4754 chr3R 28331491 28331500 chr3R 28331595 28331596 4 102 19.5 22.5 21.0 0.2 105 chr3R 28331491 intron larp - chr3R 28331544 intron larp - chr3R 28331596 intron larp - chr3R_4_28330001 chr3R_28330001 RAL-303_100b 4755 chr3R 28331502 28331526 chr3R 28331594 28331630 12 102 14.0 22.5 18.2 0.6 128 chr3R 28331502 intron larp - chr3R 28331566 intron larp - chr3R 28331630 intron larp - chr3R_12_28330001 chr3R_28330001 RAL-303_100b 4756 chr3R 28345625 28345671 chr3R 28345726 28345772 5 96 31.5 26.0 28.8 0.2 147 chr3R 28345625 intergenic Moca-cyp + chr3R 28345698 intergenic not near genes chr3R 28345772 intergenic not near genes chr3R_5_28345001 chr3R_28345001 RAL-303_100b 4757 chr3R 28352487 28352542 chr3R 28352852 28352907 29 363 45.5 52.5 49.0 0.6 420 chr3R 28352487 exon Or98b + chr3R 28352697 exon Or98b + chr3R 28352907 exon Or98b + chr3R_29_28350001 chr3R_28350001 RAL-303_100b 4758 chr3R 28393672 28393947 chr3R 28393797 28394052 67 117 19.0 13.5 16.2 3.9 380 chr3R 28393672 intergenic not near genes chr3R 28393862 intergenic not near genes chr3R 28394052 intergenic not near genes chr3R_67_28390001 chr3R_28390001 RAL-303_100b 4759 chr3R 28407023 28407057 chr3R 28407141 28407174 4 118 71.0 46.5 58.8 0.1 151 chr3R 28407023 intergenic not near genes chr3R 28407098 intergenic not near genes chr3R 28407174 intergenic not near genes chr3R_4_28405001 chr3R_28405001 RAL-303_100b 4760 chr3R 28417614 28417657 chr3R 28417720 28417756 9 110 69.0 80.0 74.5 0.1 142 chr3R 28417614 intergenic not near genes chr3R 28417685 intergenic not near genes chr3R 28417756 intergenic beat-VI + chr3R_9_28415001 chr3R_28415001 RAL-303_100b 4761 chr3R 28419471 28419514 chr3R 28419585 28419628 6 112 44.5 47.0 45.8 0.1 157 chr3R 28419471 intron beat-VI + chr3R 28419550 intron beat-VI + chr3R 28419628 intron beat-VI + chr3R_6_28415001 chr3R_28415001 RAL-303_100b 4762 chr3R 28420968 28421010 chr3R 28421372 28421414 22 401 40.0 44.0 42.0 0.5 446 chr3R 28420968 intron beat-VI + chr3R 28421191 intron beat-VI + chr3R 28421414 intron beat-VI + chr3R_22_28420001 chr3R_28420001 RAL-303_100b 4763 chr3R 28424148 28424205 chr3R 28424262 28424319 32 112 44.0 49.5 46.8 0.7 171 chr3R 28424148 intron beat-VI + chr3R 28424234 intron beat-VI + chr3R 28424319 intron beat-VI + chr3R_32_28420001 chr3R_28420001 RAL-303_100b 4764 chr3R 28426491 28426494 chr3R 28426586 28426605 4 107 15.5 48.0 31.8 0.1 114 chr3R 28426491 intron beat-VI + chr3R 28426548 intron beat-VI + chr3R 28426605 intron beat-VI + chr3R_4_28425001 chr3R_28425001 RAL-303_100b 4765 chr3R 28442136 28442162 chr3R 28442249 28442270 13 109 30.0 23.5 26.8 0.5 134 chr3R 28442136 intron beat-VI + chr3R 28442203 intron beat-VI + chr3R 28442270 intron beat-VI + chr3R_13_28440001 chr3R_28440001 RAL-303_100b 4766 chr3R 28442164 28442188 chr3R 28442247 28442276 21 102 18.5 23.5 21.0 1.0 112 chr3R 28442164 intron beat-VI + chr3R 28442220 intron beat-VI + chr3R 28442276 intron beat-VI + chr3R_21_28440001 chr3R_28440001 RAL-303_100b 4767 chr3R 28445581 28445637 chr3R 28445695 28445741 20 111 31.0 36.0 33.5 0.6 160 chr3R 28445581 intron beat-VI + chr3R 28445661 intron beat-VI + chr3R 28445741 intron beat-VI + chr3R_20_28445001 chr3R_28445001 RAL-303_100b 4768 chr3R 28454186 28454215 chr3R 28454394 28454423 5 207 56.0 70.0 63.0 0.1 237 chr3R 28454186 intron beat-VI + chr3R 28454304 intron beat-VI + chr3R 28454423 intron beat-VI + chr3R_5_28450001 chr3R_28450001 RAL-303_100b 4769 chr3R 28478464 28478524 chr3R 28478565 28478618 33 96 43.0 40.5 41.8 0.8 154 chr3R 28478464 intergenic not near genes chr3R 28478541 intergenic not near genes chr3R 28478618 intergenic not near genes chr3R_33_28475001 chr3R_28475001 RAL-303_100b 4770 chr3R 28479124 28479168 chr3R 28479247 28479291 28 122 39.0 46.5 42.8 0.6 167 chr3R 28479124 intergenic not near genes chr3R 28479208 intergenic not near genes chr3R 28479291 intergenic not near genes chr3R_28_28475001 chr3R_28475001 RAL-303_100b 4771 chr3R 28480306 28480331 chr3R 28480412 28480437 11 105 53.5 47.0 50.2 0.2 131 chr3R 28480306 intergenic not near genes chr3R 28480372 intergenic not near genes chr3R 28480437 intergenic not near genes chr3R_11_28480001 chr3R_28480001 RAL-303_100b 4772 chr3R 28554672 28554730 chr3R 28554788 28554820 45 112 10.5 14.0 12.2 3.4 148 chr3R 28554672 intergenic not near genes chr3R 28554746 intergenic not near genes chr3R 28554820 intergenic not near genes chr3R_45_28550001 chr3R_28550001 RAL-303_100b 4773 chr3R 28591262 28591308 chr3R 28591379 28591427 15 118 46.0 33.5 39.8 0.4 165 chr3R 28591262 5` UTR MRE23 + chr3R 28591344 5` UTR MRE23 + chr3R 28591427 intergenic MRE23 + chr3R_15_28590001 chr3R_28590001 RAL-303_100b 4774 chr3R 28626169 28626225 chr3R 28626292 28626340 30 116 40.5 43.0 41.8 0.7 171 chr3R 28626169 intron CG10011 - chr3R 28626254 intron CG10011 - chr3R 28626340 intron CG10011 - chr3R_30_28625001 chr3R_28625001 RAL-303_100b 4775 chr3R 28628110 28628162 chr3R 28628213 28628244 17 101 33.0 30.0 31.5 0.5 134 chr3R 28628110 intron CG10011 - chr3R 28628177 intron CG10011 - chr3R 28628244 intron CG10011 - chr3R_17_28625001 chr3R_28625001 RAL-303_100b 4776 chr3R 28653602 28653629 chr3R 28653833 28653861 5 232 58.5 73.5 66.0 0.1 259 chr3R 28653602 intergenic not near genes chr3R 28653732 intergenic not near genes chr3R 28653861 intergenic not near genes chr3R_5_28650001 chr3R_28650001 RAL-303_100b 4777 chr3R 28702909 28702961 chr3R 28703018 28703070 19 109 56.5 55.5 56.0 0.3 161 chr3R 28702909 intron htt + chr3R 28702990 intron htt + chr3R 28703070 intron htt + chr3R_19_28700001 chr3R_28700001 RAL-303_100b 4778 chr3R 28742473 28742509 chr3R 28742574 28742610 10 98 55.5 55.0 55.2 0.2 137 chr3R 28742473 intron AstA-R2 - chr3R 28742542 intron AstA-R2 - chr3R 28742610 intron AstA-R2 - chr3R_10_28740001 chr3R_28740001 RAL-303_100b 4779 chr3R 28758262 28758285 chr3R 28763904 28763917 roo 11 5641 32.5 0.0 16.2 0.6 5655 chr3R 28758262 intergenic aqrs - chr3R 28761090 intergenic not near genes chr3R 28763917 intergenic not near genes chr3R_11_28760001 chr3R_28760001 RAL-303_100b 4780 chr3R 28758304 28758318 chr3R 28771331 28771350 Stalker4 12 13030 10.5 11.5 11.0 1.0 13046 chr3R 28758304 intergenic aqrs - chr3R 28764827 intergenic not near genes chr3R 28771350 intergenic not near genes chr3R_12_28760001 chr3R_28760001 RAL-303_100b 4781 chr3R 28763901 28763918 chr3R 28771369 28771386 Stalker4 11 7467 0.0 24.5 12.2 0.8 7485 chr3R 28763901 intergenic not near genes chr3R 28767644 intergenic not near genes chr3R 28771386 intergenic not near genes chr3R_11_28765001 chr3R_28765001 RAL-303_100b 4782 chr3R 28792842 28792902 chr3R 28797962 28798022 jockey 37 5111 10.5 16.5 13.5 2.6 5180 chr3R 28792842 intergenic not near genes chr3R 28795432 intergenic not near genes chr3R 28798022 intergenic not near genes chr3R_37_28795001 chr3R_28795001 RAL-303_100b 4783 chr3R 28804525 28804572 chr3R 28804651 28804698 13 124 55.5 64.0 59.8 0.2 173 chr3R 28804525 intergenic not near genes chr3R 28804612 intergenic not near genes chr3R 28804698 intergenic not near genes chr3R_13_28800001 chr3R_28800001 RAL-303_100b 4784 chr3R 28811547 28811604 chr3R 28811718 28811775 24 169 35.0 33.5 34.2 0.7 228 chr3R 28811547 intergenic wdn - chr3R 28811661 intergenic wdn -,CG1646 + chr3R 28811775 intergenic CG1646 +,wdn - chr3R_24_28810001 chr3R_28810001 RAL-303_100b 4785 chr3R 28830878 28830921 chr3R 28830971 28831024 6 101 72.0 72.0 72.0 0.1 146 chr3R 28830878 intron WASp - chr3R 28830951 intron WASp - chr3R 28831024 intron WASp - chr3R_6_28830001 chr3R_28830001 RAL-303_100b 4786 chr3R 21907534 21907536 chr3R 28831799 28831802 76 6924267 78.5 85.5 82.0 0.9 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_76_25365001 chr3R_25365001 RAL-303_100b 4787 chr3R 28843037 28843093 chr3R 28843178 28843233 15 140 33.0 43.5 38.2 0.4 196 chr3R 28843037 intron Apc - chr3R 28843135 intron Apc - chr3R 28843233 intron Apc - chr3R_15_28840001 chr3R_28840001 RAL-303_100b 4788 chr3R 28870598 28870647 chr3R 28870706 28870755 13 107 56.0 51.0 53.5 0.2 157 chr3R 28870598 intergenic CG33203 -,spg + chr3R 28870676 3` UTR CG33203 - chr3R 28870755 3` UTR CG33203 - chr3R_13_28870001 chr3R_28870001 RAL-303_100b 4789 chr3R 28892322 28892358 chr3R 28892406 28892437 9 91 64.0 59.0 61.5 0.1 115 chr3R 28892322 intron Doa + chr3R 28892380 intron Doa + chr3R 28892437 intron Doa + chr3R_9_28890001 chr3R_28890001 RAL-303_100b 4790 chr3R 28939744 28939798 chr3R 28939857 28939900 18 110 47.5 40.0 43.8 0.4 156 chr3R 28939744 intron CG14521 - chr3R 28939822 intron CG14521 - chr3R 28939900 intron CG14521 - chr3R_18_28935001 chr3R_28935001 RAL-303_100b 4791 chr3R 28941054 28941060 chr3R 28941156 28941162 5 102 56.0 47.0 51.5 0.1 108 chr3R 28941054 intron CG14521 - chr3R 28941108 intron CG14521 - chr3R 28941162 intron CG14521 - chr3R_5_28940001 chr3R_28940001 RAL-303_100b 4792 chr3R 28971139 28971182 chr3R 28971245 28971288 10 106 26.5 23.5 25.0 0.4 149 chr3R 28971139 5` UTR CR45669 + chr3R 28971214 5` UTR CR45669 + chr3R 28971288 5` UTR CR45669 + chr3R_10_28970001 chr3R_28970001 RAL-303_100b 4793 chr3R 28985043 28985092 chr3R 28985170 28985213 15 127 24.0 29.0 26.5 0.5 170 chr3R 28985043 intergenic not near genes chr3R 28985128 intergenic not near genes chr3R 28985213 intergenic not near genes chr3R_15_28985001 chr3R_28985001 RAL-303_100b 4794 chr3R 28988988 28989019 chr3R 28989092 28989123 7 103 26.5 40.5 33.5 0.2 135 chr3R 28988988 intergenic not near genes chr3R 28989056 intergenic not near genes chr3R 28989123 intergenic not near genes chr3R_7_28985001 chr3R_28985001 RAL-303_100b 4795 chr3R 29009408 29009452 chr3R 29009565 29009619 16 164 65.5 48.5 57.0 0.3 211 chr3R 29009408 intron wat - chr3R 29009514 intron wat - chr3R 29009619 intron wat - chr3R_16_29005001 chr3R_29005001 RAL-303_100b 4796 chr3R 29011945 29011998 chr3R 29012076 29012131 13 132 46.5 32.0 39.2 0.3 186 chr3R 29011945 intron wat - chr3R 29012038 intron wat - chr3R 29012131 intron wat - chr3R_13_29010001 chr3R_29010001 RAL-303_100b 4797 chr3R 29032730 29032773 chr3R 29032821 29032861 47 95 17.0 14.5 15.8 2.8 131 chr3R 29032730 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R 29032796 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R 29032861 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R_47_29030001 chr3R_29030001 RAL-303_100b 4798 chr3R 29054010 29054047 chr3R 29054100 29054148 20 97 34.0 43.0 38.5 0.5 138 chr3R 29054010 intergenic CG11842 +,CG11843 + chr3R 29054079 intergenic CG11842 +,CG11843 + chr3R 29054148 intergenic CG11843 +,CG11842 + chr3R_20_29050001 chr3R_29050001 RAL-303_100b 4799 chr3R 29067586 29067636 chr3R 29067757 29067804 11 172 46.0 34.0 40.0 0.3 218 chr3R 29067586 intron CG11873 + chr3R 29067695 intron CG11873 + chr3R 29067804 intron CG11873 + chr3R_11_29065001 chr3R_29065001 RAL-303_100b 4800 chr3R 29070029 29070080 chr3R 29070135 29070186 31 104 45.5 42.0 43.8 0.7 157 chr3R 29070029 intron CG11873 + chr3R 29070108 intron CG11873 + chr3R 29070186 intron CG11873 + chr3R_31_29070001 chr3R_29070001 RAL-303_100b 4801 chr3R 29079354 29079410 chr3R 29080751 29080781 NOF 54 1394 23.0 14.5 18.8 2.7 1427 chr3R 29079354 intron CG11873 + chr3R 29080068 intron CG11873 + chr3R 29080781 intron CG11873 + chr3R_54_29080001 chr3R_29080001 RAL-303_100b 4802 chr3R 29091412 29091433 chr3R 29091525 29091546 7 113 36.5 50.5 43.5 0.2 134 chr3R 29091412 intron CG11873 + chr3R 29091479 intron CG11873 + chr3R 29091546 intron CG11873 + chr3R_7_29090001 chr3R_29090001 RAL-303_100b 4803 chr3R 29128509 29128519 chr3R 29128591 29128641 7 112 0.0 19.0 9.5 0.7 132 chr3R 29128509 intergenic dgt6 -,CG11880 + chr3R 29128575 intergenic dgt6 -,CG11880 + chr3R 29128641 3` UTR dgt6 - chr3R_7_29125001 chr3R_29125001 RAL-303_100b 4804 chr3R 29176106 29176123 chr3R 29176220 29176220 8 110 61.0 58.5 59.8 0.1 114 chr3R 29176106 intron CG14509 - chr3R 29176163 intron CG14509 - chr3R 29176220 intron CG14509 - chr3R_8_29175001 chr3R_29175001 RAL-303_100b 4805 chr3R 29179623 29179675 chr3R 29180108 29180140 40 482 34.5 48.5 41.5 0.9 517 chr3R 29179623 intron CG14509 - chr3R 29179882 intron CG14509 - chr3R 29180140 intron CG14509 - chr3R_40_29175001 chr3R_29175001 RAL-303_100b 4806 chr3R 29186995 29187045 chr3R 29187133 29187183 22 136 51.5 35.5 43.5 0.5 188 chr3R 29186995 intron CG14509 - chr3R 29187089 intron CG14509 - chr3R 29187183 intron CG14509 - chr3R_22_29185001 chr3R_29185001 RAL-303_100b 4807 chr3R 29237225 29237285 chr3R 29239271 29239307 23 2042 81.5 25.0 53.2 0.4 2082 chr3R 29237225 exon CG11951 - chr3R 29238266 intron CG11951 - chr3R 29239307 exon CG31427 - chr3R_23_29235001 chr3R_29235001 RAL-303_100b 4808 chr3R 29237531 29237536 chr3R 29239449 29239454 10 1918 81.0 35.0 58.0 0.2 1923 chr3R 29237531 exon CG11951 - chr3R 29238492 intron CG11951 - chr3R 29239454 exon CG31427 - chr3R_10_29235001 chr3R_29235001 RAL-303_100b 4809 chr3R 29238752 29238791 chr3R 29238891 29238924 37 136 9.5 26.5 18.0 1.9 172 chr3R 29238752 intergenic CG11951 -,CG31427 - chr3R 29238838 3` UTR CG31427 - chr3R 29238924 3` UTR CG31427 - chr3R_37_29235001 chr3R_29235001 RAL-303_100b 4810 chr3R 29239201 29239250 chr3R 29245517 29245566 26 6314 25.0 72.5 48.8 0.5 6365 chr3R 29239201 exon CG31427 - chr3R 29242384 exon CG31445 - chr3R 29245566 exon SP1029 - chr3R_26_29240001 chr3R_29240001 RAL-303_100b 4811 chr3R 29237522 29237526 chr3R 29239405 29239425 17 1885 77.5 42.0 59.8 0.3 1903 chr3R 29237522 exon CG11951 - chr3R 29238474 intron CG11951 - chr3R 29239425 exon CG31427 - chr3R_17_29235001 chr3R_29235001 RAL-303_100b 4812 chr3R 29240285 29240345 chr3R 29240394 29240451 31 107 14.5 0.0 7.2 3.8 166 chr3R 29240285 intron CG31427 - chr3R 29240368 intergenic CG31427 -,CG31445 - chr3R 29240451 intergenic CG31427 -,CG31445 - chr3R_31_29240001 chr3R_29240001 RAL-303_100b 4813 chr3R 29257549 29257583 chr3R 29257827 29257833 9 271 19.5 0.0 9.8 0.8 284 chr3R 29257549 intergenic CG45544 + chr3R 29257691 intergenic CG45544 + chr3R 29257833 intergenic CG45544 + chr3R_9_29255001 chr3R_29255001 RAL-303_100b 4814 chr3R 29319810 29319861 chr3R 29320154 29320155 jockey 33 341 12.5 17.5 15.0 2.1 345 chr3R 29319810 intergenic Cnx99A - chr3R 29319982 intergenic Cnx99A - chr3R 29320155 intergenic not near genes chr3R_33_29315001 chr3R_29315001 RAL-303_100b 4815 chr3R 29332257 29332308 chr3R 29332359 29332410 47 100 14.5 12.0 13.2 3.3 153 chr3R 29332257 intergenic not near genes chr3R 29332334 intergenic not near genes chr3R 29332410 intergenic not near genes chr3R_47_29330001 chr3R_29330001 RAL-303_100b 4816 chr3R 29376335 29376364 chr3R 29376448 29376477 24 111 14.5 1.0 7.8 2.7 142 chr3R 29376335 intergenic not near genes chr3R 29376406 intergenic not near genes chr3R 29376477 intergenic not near genes chr3R_24_29375001 chr3R_29375001 RAL-303_100b 4817 chr3R 29383733 29383741 chr3R 29383851 29383859 10 118 19.0 31.5 25.2 0.4 126 chr3R 29383733 intron Ptp99A + chr3R 29383796 intron Ptp99A + chr3R 29383859 intron Ptp99A + chr3R_10_29380001 chr3R_29380001 RAL-303_100b 4818 chr3R 29383742 29383759 chr3R 29383850 29383876 15 116 10.0 31.0 20.5 0.7 134 chr3R 29383742 intron Ptp99A + chr3R 29383809 intron Ptp99A + chr3R 29383876 intron Ptp99A + chr3R_15_29380001 chr3R_29380001 RAL-303_100b 4819 chr3R 29402956 29403007 chr3R 29403075 29403127 45 118 15.0 12.0 13.5 3.1 171 chr3R 29402956 intron Ptp99A + chr3R 29403042 intron Ptp99A + chr3R 29403127 intron Ptp99A + chr3R_45_29400001 chr3R_29400001 RAL-303_100b 4820 chr3R 29406593 29406607 chr3R 29407904 29407918 jockey 10 1311 41.0 19.5 30.2 0.3 1325 chr3R 29406593 intron Ptp99A + chr3R 29407256 intron Ptp99A + chr3R 29407918 intron Ptp99A + chr3R_10_29405001 chr3R_29405001 RAL-303_100b 4821 chr3R 29406608 29406649 chr3R 29407903 29407931 jockey 42 1306 18.5 19.5 19.0 2.1 1323 chr3R 29406608 intron Ptp99A + chr3R 29407270 intron Ptp99A + chr3R 29407931 intron Ptp99A + chr3R_42_29405001 chr3R_29405001 RAL-303_100b 4822 chr3R 29430347 29430402 chr3R 29430478 29430506 53 128 22.0 16.0 19.0 2.6 159 chr3R 29430347 intron Ptp99A + chr3R 29430426 intron Ptp99A + chr3R 29430506 intron Ptp99A + chr3R_53_29430001 chr3R_29430001 RAL-303_100b 4823 chr3R 29439693 29439748 chr3R 29439807 29439861 47 109 14.5 17.0 15.8 2.8 168 chr3R 29439693 intron Ptp99A + chr3R 29439777 intron Ptp99A + chr3R 29439861 intron Ptp99A + chr3R_47_29435001 chr3R_29435001 RAL-303_100b 4824 chr3R 29446968 29446977 chr3R 29447080 29447089 11 112 49.0 17.5 33.2 0.3 121 chr3R 29446968 intron Ptp99A + chr3R 29447028 intron Ptp99A + chr3R 29447089 intron Ptp99A + chr3R_11_29445001 chr3R_29445001 RAL-303_100b 4825 chr3R 29446978 29447024 chr3R 29447079 29447123 52 107 17.5 17.5 17.5 2.8 145 chr3R 29446978 intron Ptp99A + chr3R 29447050 intron Ptp99A + chr3R 29447123 intron Ptp99A + chr3R_52_29445001 chr3R_29445001 RAL-303_100b 4826 chr3R 29449332 29449391 chr3R 29449435 29449494 66 101 22.5 14.5 18.5 3.4 162 chr3R 29449332 intron Ptp99A + chr3R 29449413 intron Ptp99A + chr3R 29449494 intron Ptp99A + chr3R_66_29445001 chr3R_29445001 RAL-303_100b 4827 chr3R 29508803 29508807 chr3R 29508970 29508974 6 167 0.0 0.0 0.0 6.0 171 chr3R 29508803 intergenic not near genes chr3R 29508888 intergenic not near genes chr3R 29508974 intergenic not near genes chr3R_6_29505001 chr3R_29505001 RAL-303_100b 4828 chr3R 29581515 29581560 chr3R 29581621 29581661 35 105 12.5 19.0 15.8 2.1 146 chr3R 29581515 intergenic not near genes chr3R 29581588 intergenic not near genes chr3R 29581661 intergenic not near genes chr3R_35_29580001 chr3R_29580001 RAL-303_100b 4829 chr3R 29606911 29606968 chr3R 29607014 29607071 50 99 11.0 9.0 10.0 4.5 160 chr3R 29606911 intron alph + chr3R 29606991 intron alph + chr3R 29607071 intron alph + chr3R_50_29605001 chr3R_29605001 RAL-303_100b 4830 chr3R 29627260 29627313 chr3R 29627697 29627733 43 432 13.5 8.5 11.0 3.6 473 chr3R 29627260 intergenic not near genes chr3R 29627496 intergenic not near genes chr3R 29627733 intergenic not near genes chr3R_43_29625001 chr3R_29625001 RAL-303_100b 4831 chr3R 29648985 29649014 chr3R 29649100 29649129 17 113 12.0 8.5 10.2 1.5 144 chr3R 29648985 intron Dop1R2 - chr3R 29649057 intron Dop1R2 - chr3R 29649129 intron Dop1R2 - chr3R_17_29645001 chr3R_29645001 RAL-303_100b 4832 chr3R 29719376 29719431 chr3R 29719487 29719532 58 110 11.0 13.0 12.0 4.5 156 chr3R 29719376 intron CG15506 + chr3R 29719454 intron CG15506 + chr3R 29719532 intron CG15506 + chr3R_58_29715001 chr3R_29715001 RAL-303_100b 4833 chr3R 29738241 29738296 chr3R 29739733 29739788 hobo 49 1492 11.5 14.5 13.0 3.5 1547 chr3R 29738241 intergenic CG1969 +,CG7598 + chr3R 29739014 intron CG1969 + chr3R 29739788 5` UTR CG1969 + chr3R_49_29735001 chr3R_29735001 RAL-303_100b 4834 chr3R 29759076 29759078 chr3R 29759520 29759522 5 444 33.5 0.0 16.8 0.3 446 chr3R 29759076 intergenic CR44953 - chr3R 29759299 intergenic CR44953 - chr3R 29759522 intergenic CR44953 - chr3R_5_29755001 chr3R_29755001 RAL-303_100b 4835 chr3R 29760346 29760389 chr3R 29761562 29761609 pogo 39 1224 17.5 13.5 15.5 2.4 1263 chr3R 29760346 intergenic not near genes chr3R 29760978 intergenic not near genes chr3R 29761609 intergenic not near genes chr3R_39_29760001 chr3R_29760001 RAL-303_100b 4836 chr3R 29782239 29782296 chr3R 29782338 29782397 37 97 19.5 15.0 17.2 2.0 158 chr3R 29782239 intron kay + chr3R 29782318 intron kay + chr3R 29782397 intron kay + chr3R_37_29780001 chr3R_29780001 RAL-303_100b 4837 chr3R 29843852 29843887 chr3R 29843957 29843992 33 102 18.0 22.5 20.2 1.6 140 chr3R 29843852 intron Cad99C + chr3R 29843922 intron Cad99C + chr3R 29843992 intron Cad99C + chr3R_33_29840001 chr3R_29840001 RAL-303_100b 4838 chr3R 29881996 29882052 chr3R 29891178 29891234 roo 70 9180 14.5 20.0 17.2 3.8 9238 chr3R 29881996 intron CG31038 + chr3R 29886615 intron CG31038 + chr3R 29891234 intron CG31038 + chr3R_70_29885001 chr3R_29885001 RAL-303_100b 4839 chr3R 29963473 29963479 chr3R 29963585 29963606 12 122 18.5 10.5 14.5 0.8 133 chr3R 29963473 intron TkR99D - chr3R 29963540 intron TkR99D - chr3R 29963606 intron TkR99D - chr3R_12_29960001 chr3R_29960001 RAL-303_100b 4840 chr3R 29963480 29963511 chr3R 29963582 29963638 41 121 10.5 10.0 10.2 3.7 158 chr3R 29963480 intron TkR99D - chr3R 29963559 intron TkR99D - chr3R 29963638 intron TkR99D - chr3R_41_29960001 chr3R_29960001 RAL-303_100b 4841 chr3R 29966036 29966055 chr3R 29966141 29966157 4 102 17.0 21.0 19.0 0.2 121 chr3R 29966036 intron TkR99D - chr3R 29966096 intron TkR99D - chr3R 29966157 intron TkR99D - chr3R_4_29965001 chr3R_29965001 RAL-303_100b 4842 chr3R 29966058 29966074 chr3R 29966139 29966176 21 97 12.5 20.0 16.2 1.2 118 chr3R 29966058 intron TkR99D - chr3R 29966117 intron TkR99D - chr3R 29966176 intron TkR99D - chr3R_21_29965001 chr3R_29965001 RAL-303_100b 4843 chr3R 29968734 29968791 chr3R 29968943 29969000 58 206 16.0 19.5 17.8 3.1 266 chr3R 29968734 intron TkR99D - chr3R 29968867 intron TkR99D - chr3R 29969000 5` UTR TkR99D - chr3R_58_29965001 chr3R_29965001 RAL-303_100b 4844 chr3R 30001710 30001763 chr3R 30001807 30001848 30 92 21.0 16.5 18.8 1.5 138 chr3R 30001710 intron Tace + chr3R 30001779 intron Tace + chr3R 30001848 intron Tace + chr3R_30_30000001 chr3R_30000001 RAL-303_100b 4845 chr3R 30032137 30032170 chr3R 30032241 30032242 23 99 32.0 17.5 24.8 0.9 105 chr3R 30032137 intron Axn + chr3R 30032190 intron Axn + chr3R 30032242 intron Axn + chr3R_23_30030001 chr3R_30030001 RAL-303_100b 4846 chr3R 30046305 30046361 chr3R 30046453 30046509 55 146 16.0 14.5 15.2 3.4 204 chr3R 30046305 intergenic RpL32 -,CG7943 + chr3R 30046407 intergenic CG7943 +,RpL32 - chr3R 30046509 5` UTR CG7943 + chr3R_55_30045001 chr3R_30045001 RAL-303_100b 4847 chr3R 30061837 30061861 chr3R 30061940 30061948 17 101 15.0 2.5 8.8 1.7 111 chr3R 30061837 intron sima + chr3R 30061892 intron sima + chr3R 30061948 intron sima + chr3R_17_30060001 chr3R_30060001 RAL-303_100b 4848 chr3R 30077879 30077941 chr3R 30077991 30078053 60 110 11.0 11.5 11.2 4.9 174 chr3R 30077879 intron sima + chr3R 30077966 intron sima + chr3R 30078053 intron sima + chr3R_60_30075001 chr3R_30075001 RAL-303_100b 4849 chr3R 30084828 30084878 chr3R 30086315 30086370 hobo 53 1489 12.5 21.0 16.8 3.0 1542 chr3R 30084828 intron sima + chr3R 30085599 intron sima + chr3R 30086370 intron sima + chr3R_53_30085001 chr3R_30085001 RAL-303_100b 4850 chr3R 30088631 30088641 chr3R 30088713 30088753 16 108 0.0 14.0 7.0 2.0 122 chr3R 30088631 intron sima + chr3R 30088692 intron sima + chr3R 30088753 intron sima + chr3R_16_30085001 chr3R_30085001 RAL-303_100b 4851 chr3R 30210591 30210674 chr3R 30210729 30210779 23 111 0.0 19.5 9.8 2.1 188 chr3R 30210591 intergenic Anp +,CecA1 + chr3R 30210685 intergenic CecA1 +,Anp + chr3R 30210779 intergenic CecA1 +,Anp + chr3R_23_30210001 chr3R_30210001 RAL-303_100b 4852 chr3R 30224625 30224671 chr3R 30224728 30224774 44 101 17.5 6.0 11.8 3.4 149 chr3R 30224625 intergenic not near genes chr3R 30224700 intergenic not near genes chr3R 30224774 intergenic not near genes chr3R_44_30220001 chr3R_30220001 RAL-303_100b 4853 chr3R 30238734 30238781 chr3R 30239923 30239961 1360 23 1188 17.5 0.0 8.8 2.3 1227 chr3R 30238734 intergenic not near genes chr3R 30239348 intergenic not near genes chr3R 30239961 intergenic not near genes chr3R_23_30235001 chr3R_30235001 RAL-303_100b 4854 chr3R 30246296 30246334 chr3R 30246395 30246438 30 103 0.5 16.0 8.2 3.3 142 chr3R 30246296 intron CG9733 - chr3R 30246367 intron CG9733 - chr3R 30246438 intron CG9733 - chr3R_30_30245001 chr3R_30245001 RAL-303_100b 4855 chr3R 30252352 30252615 chr3R 30252457 30252701 4 116 29.0 30.0 29.5 0.1 349 chr3R 30252352 exon CG9682 + chr3R 30252526 exon CG9682 + chr3R 30252701 exon CG9682 + chr3R_4_30250001 chr3R_30250001 RAL-303_100b 4856 chr3R 30267951 30267954 chr3R 30268062 30268065 5 111 37.5 17.0 27.2 0.2 114 chr3R 30267951 intergenic not near genes chr3R 30268008 intergenic not near genes chr3R 30268065 intergenic not near genes chr3R_5_30265001 chr3R_30265001 RAL-303_100b 4857 chr3R 30267955 30268000 chr3R 30268060 30268075 25 108 12.0 16.5 14.2 1.6 120 chr3R 30267955 intergenic not near genes chr3R 30268015 intergenic not near genes chr3R 30268075 intergenic not near genes chr3R_25_30265001 chr3R_30265001 RAL-303_100b 4858 chr3R 30269612 30269671 chr3R 30269720 30269779 53 106 1.0 8.0 4.5 9.6 167 chr3R 30269612 intergenic not near genes chr3R 30269696 intergenic not near genes chr3R 30269779 intergenic not near genes chr3R_53_30265001 chr3R_30265001 RAL-303_100b 4859 chr3R 7773344 7773344 chr3R 30278264 30278264 8 22504920 69.0 70.5 69.8 0.1 22504920 chr3R 7773344 intergenic not near genes chr3R 19025804 exon CG14285 + chr3R 30278264 5` UTR hdc + chr3R_8_19025001 chr3R_19025001 RAL-303_100b 4860 chr3R 30284518 30284526 chr3R 30284643 30284651 9 125 28.5 0.0 14.2 0.6 133 chr3R 30284518 intron hdc + chr3R 30284584 intron hdc + chr3R 30284651 intron hdc + chr3R_9_30280001 chr3R_30280001 RAL-303_100b 4861 chr3R 30284527 30284570 chr3R 30284642 30284677 52 124 6.5 0.0 3.2 12.4 150 chr3R 30284527 intron hdc + chr3R 30284602 intron hdc + chr3R 30284677 intron hdc + chr3R_52_30280001 chr3R_30280001 RAL-303_100b 4862 chr3R 30287747 30287776 chr3R 30287855 30287879 19 106 13.0 14.5 13.8 1.3 132 chr3R 30287747 intron hdc + chr3R 30287813 intron hdc + chr3R 30287879 intron hdc + chr3R_19_30285001 chr3R_30285001 RAL-303_100b 4863 chr3R 30292350 30292362 chr3R 30292453 30292465 11 103 29.0 1.5 15.2 0.7 115 chr3R 30292350 intron hdc + chr3R 30292408 intron hdc + chr3R 30292465 intron hdc + chr3R_11_30290001 chr3R_30290001 RAL-303_100b 4864 chr3R 30292363 30292403 chr3R 30292452 30292491 43 97 13.5 1.0 7.2 5.2 128 chr3R 30292363 intron hdc + chr3R 30292427 intron hdc + chr3R 30292491 intron hdc + chr3R_43_30290001 chr3R_30290001 RAL-303_100b 4865 chr3R 30298620 30298643 chr3R 30298724 30298747 20 101 32.5 15.5 24.0 0.8 127 chr3R 30298620 intron hdc + chr3R 30298684 intron hdc + chr3R 30298747 intron hdc + chr3R_20_30295001 chr3R_30295001 RAL-303_100b 4866 chr3R 30298644 30298678 chr3R 30298723 30298780 39 97 21.0 16.0 18.5 2.0 136 chr3R 30298644 intron hdc + chr3R 30298712 intron hdc + chr3R 30298780 intron hdc + chr3R_39_30295001 chr3R_30295001 RAL-303_100b 4867 chr3R 30315612 30315623 chr3R 30315714 30315728 14 103 41.0 47.5 44.2 0.3 116 chr3R 30315612 intron hdc + chr3R 30315670 intron hdc + chr3R 30315728 intron hdc + chr3R_14_30315001 chr3R_30315001 RAL-303_100b 4868 chr3R 30317324 30317337 chr3R 30324941 30324944 roo 9 7616 0.5 20.0 10.2 0.8 7620 chr3R 30317324 intron hdc + chr3R 30321134 intron hdc + chr3R 30324944 intron hdc + chr3R_9_30320001 chr3R_30320001 RAL-303_100b 4869 chr3R 30317338 30317341 chr3R 30324928 30324957 roo 7 7612 0.5 17.0 8.8 0.7 7619 chr3R 30317338 intron hdc + chr3R 30321148 intron hdc + chr3R 30324957 intron hdc + chr3R_7_30320001 chr3R_30320001 RAL-303_100b 4870 chr3R 30317342 30317356 chr3R 30324923 30324973 roo 20 7611 0.5 13.5 7.0 2.5 7631 chr3R 30317342 intron hdc + chr3R 30321158 intron hdc + chr3R 30324973 intron hdc + chr3R_20_30320001 chr3R_30320001 RAL-303_100b 4871 chr3R 30317357 30317359 chr3R 30324917 30324976 roo 4 7603 0.5 10.5 5.5 0.6 7619 chr3R 30317357 intron hdc + chr3R 30321166 intron hdc + chr3R 30324976 intron hdc + chr3R_4_30320001 chr3R_30320001 RAL-303_100b 4872 chr3R 30332004 30332061 chr3R 30332108 30332165 74 102 14.0 15.5 14.8 4.7 161 chr3R 30332004 intron hdc + chr3R 30332084 intron hdc + chr3R 30332165 intron hdc + chr3R_74_30330001 chr3R_30330001 RAL-303_100b 4873 chr3R 30347004 30347026 chr3R 30347113 30347120 19 105 31.0 17.5 24.2 0.8 116 chr3R 30347004 intron hdc + chr3R 30347062 intron hdc + chr3R 30347120 intron hdc + chr3R_19_30345001 chr3R_30345001 RAL-303_100b 4874 chr3R 30349658 30349694 chr3R 30350046 30350060 31 386 24.5 15.0 19.8 1.5 402 chr3R 30349658 intron hdc + chr3R 30349859 intron hdc + chr3R 30350060 intron hdc + chr3R_31_30345001 chr3R_30345001 RAL-303_100b 4875 chr3R 30374933 30374962 chr3R 30375071 30375100 26 136 25.5 16.5 21.0 1.2 167 chr3R 30374933 intergenic not near genes chr3R 30375016 intergenic not near genes chr3R 30375100 intergenic not near genes chr3R_26_30375001 chr3R_30375001 RAL-303_100b 4876 chr3R 30374963 30374986 chr3R 30375070 30375124 23 131 17.5 15.5 16.5 1.3 161 chr3R 30374963 intergenic not near genes chr3R 30375044 intergenic not near genes chr3R 30375124 intergenic not near genes chr3R_23_30375001 chr3R_30375001 RAL-303_100b 4877 chr3R 30375522 30375571 chr3R 30383170 30383219 412 20 7647 5.5 11.0 8.2 2.2 7697 chr3R 30375522 intergenic not near genes chr3R 30379370 intergenic not near genes chr3R 30383219 intergenic not near genes chr3R_20_30375001 chr3R_30375001 RAL-303_100b 4878 chr3R 30396193 30396246 chr3R 30404484 30404501 roo 46 8289 14.5 17.5 16.0 2.7 8308 chr3R 30396193 intergenic not near genes chr3R 30400347 intergenic not near genes chr3R 30404501 5` UTR CR45570 + chr3R_46_30400001 chr3R_30400001 RAL-303_100b 4879 chr3R 30456366 30456423 chr3R 30456471 30456528 43 102 10.5 14.0 12.2 3.3 162 chr3R 30456366 intergenic CG2224 -,aralar1 - chr3R 30456447 3` UTR CG2224 - chr3R 30456528 3` UTR CG2224 - chr3R_43_30455001 chr3R_30455001 RAL-303_100b 4880 chr3R 30457990 30458048 chr3R 30458095 30458153 63 103 18.5 11.0 14.8 4.0 163 chr3R 30457990 intron CG2224 - chr3R 30458072 intron CG2224 - chr3R 30458153 intron CG2224 - chr3R_63_30455001 chr3R_30455001 RAL-303_100b 4881 chr3R 30480456 30480464 chr3R 30482949 30482957 jockey 7 2492 45.5 23.0 34.2 0.2 2501 chr3R 30480456 intron PH4alphaEFB + chr3R 30481706 intron PH4alphaEFB + chr3R 30482957 intron PH4alphaEFB + chr3R_7_30480001 chr3R_30480001 RAL-303_100b 4882 chr3R 30480468 30480508 chr3R 30482945 30482979 jockey 39 2489 13.0 22.5 17.8 2.1 2511 chr3R 30480468 intron PH4alphaEFB + chr3R 30481724 intron PH4alphaEFB + chr3R 30482979 intron PH4alphaEFB + chr3R_39_30480001 chr3R_30480001 RAL-303_100b 4883 chr3R 30488098 30488112 chr3R 30488202 30488216 17 104 15.0 0.0 7.5 2.0 118 chr3R 30488098 intergenic Jon99Fii - chr3R 30488157 intergenic Jon99Fii - chr3R 30488216 intergenic Jon99Fii - chr3R_17_30485001 chr3R_30485001 RAL-303_100b 4884 chr3R 30488113 30488116 chr3R 30488201 30488220 7 101 11.0 0.0 5.5 1.1 107 chr3R 30488113 intergenic Jon99Fii - chr3R 30488166 intergenic Jon99Fii - chr3R 30488220 intergenic Jon99Fii - chr3R_7_30485001 chr3R_30485001 RAL-303_100b 4885 chr3R 30498400 30498434 chr3R 30498616 30498659 38 224 0.0 18.5 9.2 3.7 259 chr3R 30498400 intron PH4alphaNE1 - chr3R 30498530 intron PH4alphaNE1 - chr3R 30498659 intron PH4alphaNE1 - chr3R_38_30495001 chr3R_30495001 RAL-303_100b 4886 chr3R 30521715 30521734 chr3R 30521829 30521848 13 114 14.0 0.0 7.0 1.6 133 chr3R 30521715 intron jdp - chr3R 30521782 intron jdp - chr3R 30521848 intron jdp - chr3R_13_30520001 chr3R_30520001 RAL-303_100b 4887 chr3R 30544703 30544762 chr3R 30544820 30544857 32 113 14.5 14.0 14.2 2.1 154 chr3R 30544703 intron tmod + chr3R 30544780 intron tmod + chr3R 30544857 intron tmod + chr3R_32_30540001 chr3R_30540001 RAL-303_100b 4888 chr3R 30554382 30554422 chr3R 30554474 30554518 15 97 19.5 11.0 15.2 0.9 136 chr3R 30554382 intron tmod + chr3R 30554450 intron tmod + chr3R 30554518 intron tmod + chr3R_15_30550001 chr3R_30550001 RAL-303_100b 4889 chr3R 30558133 30558154 chr3R 30558239 30558260 12 106 17.0 30.0 23.5 0.5 127 chr3R 30558133 intron,intron tmod +,CG34155 - chr3R 30558196 intron,intron tmod +,CG34155 - chr3R 30558260 intron,intron tmod +,CG34155 - chr3R_12_30555001 chr3R_30555001 RAL-303_100b 4890 chr3R 30560336 30560346 chr3R 30560440 30560450 6 104 18.0 16.0 17.0 0.3 114 chr3R 30560336 intron tmod + chr3R 30560393 intron tmod + chr3R 30560450 intron tmod + chr3R_6_30560001 chr3R_30560001 RAL-303_100b 4891 chr3R 30560347 30560385 chr3R 30560439 30560487 37 102 6.5 15.0 10.8 3.1 140 chr3R 30560347 intron tmod + chr3R 30560417 intron tmod + chr3R 30560487 intron tmod + chr3R_37_30560001 chr3R_30560001 RAL-303_100b 4892 chr3R 30592483 30592495 chr3R 30592618 30592630 14 135 32.0 13.5 22.8 0.6 147 chr3R 30592483 intergenic CG2246 - chr3R 30592556 intergenic CG2246 - chr3R 30592630 intergenic CG2246 - chr3R_14_30590001 chr3R_30590001 RAL-303_100b 4893 chr3R 30592496 30592538 chr3R 30592614 30592673 45 130 11.0 12.0 11.5 3.6 177 chr3R 30592496 intergenic CG2246 - chr3R 30592584 intergenic CG2246 - chr3R 30592673 intergenic CG2246 - chr3R_45_30590001 chr3R_30590001 RAL-303_100b 4894 chr3R 30627582 30627638 chr3R 30627682 30627727 56 100 15.5 22.0 18.8 2.8 145 chr3R 30627582 3` UTR CG2267 - chr3R 30627654 exon CG2267 - chr3R 30627727 exon CG2267 - chr3R_56_30625001 chr3R_30625001 RAL-303_100b 4895 chr3R 30655012 30655017 chr3R 30655116 30655121 6 104 35.5 15.0 25.2 0.2 109 chr3R 30655012 intergenic not near genes chr3R 30655066 intergenic not near genes chr3R 30655121 intergenic not near genes chr3R_6_30655001 chr3R_30655001 RAL-303_100b 4896 chr3R 30655020 30655036 chr3R 30655114 30655140 16 100 29.0 15.0 22.0 0.7 120 chr3R 30655020 intergenic not near genes chr3R 30655080 intergenic not near genes chr3R 30655140 intergenic not near genes chr3R_16_30655001 chr3R_30655001 RAL-303_100b 4897 chr3R 30655037 30655065 chr3R 30655111 30655169 44 100 15.0 16.0 15.5 2.7 132 chr3R 30655037 intergenic not near genes chr3R 30655103 intergenic not near genes chr3R 30655169 intergenic not near genes chr3R_44_30655001 chr3R_30655001 RAL-303_100b 4898 chr3R 30679494 30679552 chr3R 30686988 30687046 blood 46 7492 10.0 13.5 11.8 3.6 7552 chr3R 30679494 intergenic not near genes chr3R 30683270 intergenic not near genes chr3R 30687046 intergenic not near genes chr3R_46_30680001 chr3R_30680001 RAL-303_100b 4899 chr3R 30744726 30744897 chr3R 30745797 30745989 4 1092 70.5 28.5 49.5 0.1 1263 chr3R 30744726 3` UTR Npc2g - chr3R 30745358 intergenic Npc2g -,Npc2h - chr3R 30745989 exon Npc2h - chr3R_4_30745001 chr3R_30745001 RAL-303_100b 4900 chr3R 30787869 30787898 chr3R 30787973 30788002 17 104 26.0 21.5 23.8 0.7 133 chr3R 30787869 3` UTR zfh1 + chr3R 30787936 3` UTR zfh1 + chr3R 30788002 3` UTR zfh1 + chr3R_17_30785001 chr3R_30785001 RAL-303_100b 4901 chr3R 30808208 30808230 chr3R 30808332 30808354 18 123 16.5 6.5 11.5 1.4 146 chr3R 30808208 intergenic dj-1beta +,cindr + chr3R 30808281 intergenic dj-1beta +,cindr + chr3R 30808354 intergenic cindr +,dj-1beta + chr3R_18_30805001 chr3R_30805001 RAL-303_100b 4902 chr3R 30808235 30808259 chr3R 30808329 30808383 16 120 8.0 6.0 7.0 2.0 148 chr3R 30808235 intergenic dj-1beta +,cindr + chr3R 30808309 intergenic cindr +,dj-1beta + chr3R 30808383 intergenic cindr +,dj-1beta + chr3R_16_30805001 chr3R_30805001 RAL-303_100b 4903 chr3R 30818786 30818842 chr3R 30820376 30820432 1360 60 1588 16.0 16.0 16.0 3.5 1646 chr3R 30818786 intron cindr + chr3R 30819609 intron cindr + chr3R 30820432 intron cindr + chr3R_60_30815001 chr3R_30815001 RAL-303_100b 4904 chr3R 30845060 30845072 chr3R 30845163 30845175 8 103 17.5 0.0 8.8 0.8 115 chr3R 30845060 intergenic not near genes chr3R 30845118 intergenic not near genes chr3R 30845175 intergenic not near genes chr3R_8_30845001 chr3R_30845001 RAL-303_100b 4905 chr3R 30850216 30850270 chr3R 30850333 30850387 53 116 11.5 18.5 15.0 3.3 171 chr3R 30850216 intergenic not near genes chr3R 30850302 intergenic not near genes chr3R 30850387 intergenic not near genes chr3R_53_30850001 chr3R_30850001 RAL-303_100b 4906 chr3R 30855776 30855787 chr3R 30855889 30855900 7 113 11.0 15.0 13.0 0.5 124 chr3R 30855776 intergenic not near genes chr3R 30855838 intergenic not near genes chr3R 30855900 intergenic not near genes chr3R_7_30855001 chr3R_30855001 RAL-303_100b 4907 chr3R 30937264 30937310 chr3R 30937451 30937491 24 185 10.0 15.0 12.5 1.8 227 chr3R 30937264 intergenic CG15550 - chr3R 30937378 intergenic CG15550 - chr3R 30937491 intergenic CG15550 - chr3R_24_30935001 chr3R_30935001 RAL-303_100b 4908 chr3R 30946347 30946412 chr3R 30946463 30946521 48 112 1.0 20.0 10.5 4.2 174 chr3R 30946347 intergenic not near genes chr3R 30946434 intergenic not near genes chr3R 30946521 intergenic not near genes chr3R_48_30945001 chr3R_30945001 RAL-303_100b 4909 chr3R 30973110 30973166 chr3R 30973294 30973325 57 183 5.0 12.5 8.8 5.8 215 chr3R 30973110 intron 5-HT7 - chr3R 30973218 intron 5-HT7 - chr3R 30973325 intron 5-HT7 - chr3R_57_30970001 chr3R_30970001 RAL-303_100b 4910 chr3R 31042085 31042144 chr3R 31042197 31042256 69 110 14.5 14.0 14.2 4.5 171 chr3R 31042085 intron CanA1 + chr3R 31042170 intron CanA1 + chr3R 31042256 intron CanA1 + chr3R_69_31040001 chr3R_31040001 RAL-303_100b 4911 chr3R 31042975 31042994 chr3R 31043072 31043096 17 101 33.0 25.0 29.0 0.6 121 chr3R 31042975 intron CanA1 + chr3R 31043036 intron CanA1 + chr3R 31043096 intron CanA1 + chr3R_17_31040001 chr3R_31040001 RAL-303_100b 4912 chr3R 31042995 31043027 chr3R 31043066 31043080 18 95 27.0 23.5 25.2 0.7 85 chr3R 31042995 intron CanA1 + chr3R 31043038 intron CanA1 + chr3R 31043080 intron CanA1 + chr3R_18_31040001 chr3R_31040001 RAL-303_100b 4913 chr3R 31074199 31074253 chr3R 31081832 31081887 springer 28 7635 16.0 3.0 9.5 2.7 7688 chr3R 31074199 intron Sox100B + chr3R 31078043 intron Sox100B + chr3R 31081887 intron Sox100B + chr3R_28_31075001 chr3R_31075001 RAL-303_100b 4914 chr3R 31093306 31093362 chr3R 31093411 31093442 45 97 9.5 32.5 21.0 2.0 136 chr3R 31093306 intron CG11317 - chr3R 31093374 intron CG11317 - chr3R 31093442 intron CG11317 - chr3R_45_31090001 chr3R_31090001 RAL-303_100b 4915 chr3R 31198584 31198613 chr3R 31198671 31198714 8 96 81.0 84.5 82.8 0.1 130 chr3R 31198584 intron CG1544 + chr3R 31198649 intron CG1544 + chr3R 31198714 intron CG1544 + chr3R_8_31195001 chr3R_31195001 RAL-303_100b 4916 chr3R 31279359 31279409 chr3R 31285564 31285615 diver 50 6211 15.5 17.0 16.2 2.9 6256 chr3R 31279359 intergenic not near genes chr3R 31282487 intergenic not near genes chr3R 31285615 intergenic not near genes chr3R_50_31280001 chr3R_31280001 RAL-303_100b 4917 chr3R 31386580 31386639 chr3R 31386964 31387023 64 381 13.0 15.0 14.0 4.3 443 chr3R 31386580 intron CG1607 + chr3R 31386802 intron CG1607 + chr3R 31387023 intron CG1607 + chr3R_64_31385001 chr3R_31385001 RAL-303_100b 4918 chr3R 31413068 31413071 chr3R 31418293 31418296 copia 5 5225 37.0 5.5 21.2 0.2 5228 chr3R 31413068 intron Gprk2 + chr3R 31415682 intron Gprk2 + chr3R 31418296 intron Gprk2 + chr3R_5_31415001 chr3R_31415001 RAL-303_100b 4919 chr3R 31413072 31413123 chr3R 31418289 31418311 copia 38 5215 11.0 5.0 8.0 4.2 5239 chr3R 31413072 intron Gprk2 + chr3R 31415692 intron Gprk2 + chr3R 31418311 intron Gprk2 + chr3R_38_31415001 chr3R_31415001 RAL-303_100b 4920 chr3R 31435336 31435390 chr3R 31435513 31435558 66 174 15.0 23.0 19.0 3.3 222 chr3R 31435336 intron Gprk2 + chr3R 31435447 intron Gprk2 + chr3R 31435558 intron Gprk2 + chr3R_66_31435001 chr3R_31435001 RAL-303_100b 4921 chr3R 31437611 31437635 chr3R 31437830 31437854 11 217 11.5 17.5 14.5 0.7 243 chr3R 31437611 intron Gprk2 + chr3R 31437732 intron Gprk2 + chr3R 31437854 intron Gprk2 + chr3R_11_31435001 chr3R_31435001 RAL-303_100b 4922 chr3R 31446062 31446076 chr3R 31446177 31446191 17 114 39.5 16.5 28.0 0.6 129 chr3R 31446062 intron Gprk2 + chr3R 31446126 intron Gprk2 + chr3R 31446191 intron Gprk2 + chr3R_17_31445001 chr3R_31445001 RAL-303_100b 4923 chr3R 31446078 31446102 chr3R 31446176 31446220 13 112 21.0 16.5 18.8 0.7 142 chr3R 31446078 intron Gprk2 + chr3R 31446149 intron Gprk2 + chr3R 31446220 intron Gprk2 + chr3R_13_31445001 chr3R_31445001 RAL-303_100b 4924 chr3R 31482341 31482400 chr3R 31482445 31482483 45 94 16.5 13.5 15.0 2.8 142 chr3R 31482341 intergenic not near genes chr3R 31482412 intergenic not near genes chr3R 31482483 intergenic not near genes chr3R_45_31480001 chr3R_31480001 RAL-303_100b 4925 chr3R 31530795 31530813 chr3R 31531147 31531165 4 349 43.5 13.0 28.2 0.1 370 chr3R 31530795 intergenic not near genes chr3R 31530980 intergenic not near genes chr3R 31531165 intergenic not near genes chr3R_4_31530001 chr3R_31530001 RAL-303_100b 4926 chr3R 31530816 31530829 chr3R 31531143 31531181 9 345 30.5 11.0 20.8 0.4 365 chr3R 31530816 intergenic not near genes chr3R 31530998 intergenic not near genes chr3R 31531181 intergenic not near genes chr3R_9_31530001 chr3R_31530001 RAL-303_100b 4927 chr3R 31530830 31530846 chr3R 31531142 31531162 32 336 17.5 10.5 14.0 2.1 332 chr3R 31530830 intergenic not near genes chr3R 31530996 intergenic not near genes chr3R 31531162 intergenic not near genes chr3R_32_31530001 chr3R_31530001 RAL-303_100b 4928 chr3R 31610092 31610148 chr3R 31610203 31610259 45 110 7.5 16.0 11.8 3.5 167 chr3R 31610092 intron CycG - chr3R 31610176 intron CycG - chr3R 31610259 intron CycG - chr3R_45_31610001 chr3R_31610001 RAL-303_100b 4929 chr3R 31615136 31615189 chr3R 31615337 31615390 70 190 15.0 18.5 16.8 3.9 254 chr3R 31615136 3` UTR Med + chr3R 31615263 3` UTR Med + chr3R 31615390 3` UTR CG11539 - chr3R_70_31615001 chr3R_31615001 RAL-303_100b 4930 chr3R 31691505 31691562 chr3R 31696296 31696342 Doc 64 4786 13.0 19.5 16.2 3.7 4837 chr3R 31691505 intergenic not near genes chr3R 31693924 intergenic not near genes chr3R 31696342 intergenic not near genes chr3R_64_31690001 chr3R_31690001 RAL-303_100b 4931 chr3R 31718500 31718506 chr3R 31718601 31718605 5 101 41.5 19.5 30.5 0.2 105 chr3R 31718500 intron ttk + chr3R 31718552 intron ttk + chr3R 31718605 intron ttk + chr3R_5_31715001 chr3R_31715001 RAL-303_100b 4932 chr3R 31718509 31718555 chr3R 31718600 31718619 28 90 24.5 19.0 21.8 1.2 110 chr3R 31718509 intron ttk + chr3R 31718564 intron ttk + chr3R 31718619 intron ttk + chr3R_28_31715001 chr3R_31715001 RAL-303_100b 4933 chr3R 31820534 31820546 chr3R 31820637 31820648 8 102 35.5 17.5 26.5 0.3 114 chr3R 31820534 intron RhoGAP100F + chr3R 31820591 intron RhoGAP100F + chr3R 31820648 intron RhoGAP100F + chr3R_8_31820001 chr3R_31820001 RAL-303_100b 4934 chr3R 31820547 31820571 chr3R 31820635 31820662 25 98 22.5 18.0 20.2 1.2 115 chr3R 31820547 intron RhoGAP100F + chr3R 31820604 intron RhoGAP100F + chr3R 31820662 intron RhoGAP100F + chr3R_25_31820001 chr3R_31820001 RAL-303_100b 4935 chr3R 31820574 31820585 chr3R 31820631 31820688 17 89 17.0 19.0 18.0 0.9 114 chr3R 31820574 intron RhoGAP100F + chr3R 31820631 intron RhoGAP100F + chr3R 31820688 intron RhoGAP100F + chr3R_17_31820001 chr3R_31820001 RAL-303_100b 4936 chr3R 31858150 31858206 chr3R 31858275 31858334 16 122 0.0 8.0 4.0 3.2 184 chr3R 31858150 intron heph - chr3R 31858242 intron heph - chr3R 31858334 intron heph - chr3R_16_31855001 chr3R_31855001 RAL-303_100b 4937 chr3R 31876152 31876209 chr3R 31876254 31876283 37 92 13.0 15.5 14.2 2.4 131 chr3R 31876152 intron heph - chr3R 31876218 intron heph - chr3R 31876283 intron heph - chr3R_37_31875001 chr3R_31875001 RAL-303_100b 4938 chr3R 31961315 31961368 chr3R 31961420 31961450 45 98 13.0 15.0 14.0 3.0 135 chr3R 31961315 intron heph - chr3R 31961382 intron heph - chr3R 31961450 intron heph - chr3R_45_31960001 chr3R_31960001 RAL-303_100b 4939 chr3R 31962054 31962096 chr3R 31962385 31962427 50 329 16.5 0.5 8.5 5.3 373 chr3R 31962054 intron heph - chr3R 31962240 intron heph - chr3R 31962427 intron heph - chr3R_50_31960001 chr3R_31960001 RAL-303_100b 4940 chr3R 31967461 31967519 chr3R 31967956 31968013 INE-1 61 489 11.0 15.0 13.0 4.4 552 chr3R 31967461 intron heph - chr3R 31967737 intron heph - chr3R 31968013 intron heph - chr3R_61_31965001 chr3R_31965001 RAL-303_100b 4941 chr3R 31976540 31976543 chr3R 31976841 31976849 4 305 2.5 4.5 3.5 0.9 309 chr3R 31976540 intron heph - chr3R 31976694 intron heph - chr3R 31976849 intron heph - chr3R_4_31975001 chr3R_31975001 RAL-303_100b 4942 chr3R 31976544 31976548 chr3R 31976837 31976854 10 302 0.0 4.5 2.2 3.1 310 chr3R 31976544 intron heph - chr3R 31976699 intron heph - chr3R 31976854 intron heph - chr3R_10_31975001 chr3R_31975001 RAL-303_100b 4943 chr3R 31976549 31976575 chr3R 31976834 31976881 24 302 0.0 3.5 1.8 8.6 332 chr3R 31976549 intron heph - chr3R 31976715 intron heph - chr3R 31976881 intron heph - chr3R_24_31975001 chr3R_31975001 RAL-303_100b 4944 chr3R 31997971 31998025 chr3R 32005461 32005510 blood 53 7494 12.5 10.0 11.2 4.3 7539 chr3R 31997971 intron heph - chr3R 32001740 intron heph - chr3R 32005510 intron heph - chr3R_53_32000001 chr3R_32000001 RAL-303_100b 4945 chr3R 32014816 32014858 chr3R 32015115 32015157 45 296 24.0 11.5 17.8 2.4 341 chr3R 32014816 5` UTR heph - chr3R 32014986 5` UTR heph - chr3R 32015157 5` UTR heph - chr3R_45_32010001 chr3R_32010001 RAL-303_100b 4946 chr3R 32014859 32014875 chr3R 32015114 32015129 13 288 16.5 11.0 13.8 0.9 270 chr3R 32014859 5` UTR heph - chr3R 32014994 5` UTR heph - chr3R 32015129 5` UTR heph - chr3R_13_32010001 chr3R_32010001 RAL-303_100b 4947 chr4 76478 76486 chr4 81946 81954 I-element 6 5467 32.5 21.0 26.8 0.2 5476 chr4 76478 intron pan + chr4 79216 intron pan + chr4 81954 intron pan + chr4_6_75001 chr4_75001 RAL-303_100b 4948 chr4 76488 76504 chr4 81941 81972 I-element 19 5467 28.5 19.5 24.0 0.8 5484 chr4 76488 intron pan + chr4 79230 intron pan + chr4 81972 intron pan + chr4_19_75001 chr4_75001 RAL-303_100b 4949 chr4 76507 76515 chr4 81938 81983 I-element 11 5459 22.0 18.0 20.0 0.5 5476 chr4 76507 intron pan + chr4 79245 intron pan + chr4 81983 intron pan + chr4_11_75001 chr4_75001 RAL-303_100b 4950 chr4 257377 257437 chr4 257572 257632 60 193 14.5 14.0 14.2 3.9 255 chr4 257377 exon RhoGAP102A + chr4 257504 intron RhoGAP102A + chr4 257632 intron RhoGAP102A + chr4_60_255001 chr4_255001 RAL-303_100b 4951 chr4 280779 280830 chr4 281434 281458 24 653 13.5 14.5 14.0 1.6 679 chr4 280779 intron Syt7 - chr4 281118 intron Syt7 - chr4 281458 intron Syt7 - chr4_24_280001 chr4_280001 RAL-303_100b 4952 chr4 314487 314531 chr4 314590 314634 29 102 9.5 11.0 10.2 2.6 147 chr4 314487 intergenic Zip102B -,CG32850 + chr4 314560 intergenic CG32850 +,Zip102B - chr4 314634 intergenic CG32850 + chr4_29_310001 chr4_310001 RAL-303_100b 4953 chr4 319968 320019 chr4 328169 328220 Stalker2 21 8198 7.5 9.0 8.2 2.3 8252 chr4 319968 3` UTR CG32850 + chr4 324094 intron CG32850 + chr4 328220 3` UTR,3` UTR CG32850 +,PMCA - chr4_21_320001 chr4_320001 RAL-303_100b 4954 chr4 368682 368710 chr4 368834 368867 20 155 10.0 15.5 12.8 1.4 185 chr4 368682 intron Hcf + chr4 368774 intron Hcf + chr4 368867 intron Hcf + chr4_20_365001 chr4_365001 RAL-303_100b 4955 chr4 671582 671593 chr4 680190 680201 Tirant 10 8607 41.5 28.0 34.8 0.3 8619 chr4 671582 intron CG11360 + chr4 675892 intron CG11360 + chr4 680201 intron CG11360 + chr4_10_675001 chr4_675001 RAL-303_100b 4956 chr4 671594 671634 chr4 680186 680196 Tirant 63 8602 16.0 26.0 21.0 2.9 8602 chr4 671594 intron CG11360 + chr4 675895 intron CG11360 + chr4 680196 intron CG11360 + chr4_63_675001 chr4_675001 RAL-303_100b 4957 chr4 706627 706646 chr4 706835 706854 13 208 56.0 74.0 65.0 0.2 227 chr4 706627 intron ey + chr4 706740 intron ey + chr4 706854 intron ey + chr4_13_705001 chr4_705001 RAL-303_100b 4958 chr4 726638 726697 chr4 726753 726782 36 113 6.5 10.0 8.2 3.9 144 chr4 726638 intron bt + chr4 726710 intron bt + chr4 726782 intron bt + chr4_36_725001 chr4_725001 RAL-303_100b 4959 chr4 959599 959631 chr4 959803 959835 33 202 24.0 15.0 19.5 1.6 236 chr4 959599 intergenic CR44030 +,CR45201 - chr4 959717 5` UTR CR44030 + chr4 959835 5` UTR CR44030 + chr4_33_955001 chr4_955001 RAL-303_100b 4960 chr4 959632 959653 chr4 959801 959857 21 200 10.5 14.5 12.5 1.6 225 chr4 959632 intergenic CR44030 +,CR45201 - chr4 959744 5` UTR CR44030 + chr4 959857 5` UTR CR44030 + chr4_21_955001 chr4_955001 RAL-303_100b 4961 chr4 972474 972527 chr4 972581 972634 33 106 8.5 14.0 11.2 2.7 160 chr4 972474 intron fuss - chr4 972554 intron fuss - chr4 972634 intron fuss - chr4_33_970001 chr4_970001 RAL-303_100b 4962 chrX 264158 264174 chrX 264272 264288 7 114 38.5 32.5 35.5 0.2 130 chrX 264158 intron CR43906 + chrX 264223 intron CR43906 + chrX 264288 intron CR43906 + chrX_7_260001 chrX_260001 RAL-303_100b 4963 chrX 264175 264214 chrX 264270 264328 13 110 30.0 32.5 31.2 0.4 153 chrX 264175 intron CR43906 + chrX 264252 intron CR43906 + chrX 264328 intron CR43906 + chrX_13_260001 chrX_260001 RAL-303_100b 4964 chrX 295833 295882 chrX 303478 303527 412 37 7644 12.0 17.5 14.8 2.3 7694 chrX 295833 intron CG3777 + chrX 299680 intron CG3777 + chrX 303527 intron CG3777 + chrX_37_295001 chrX_295001 RAL-303_100b 4965 chrX 318449 318502 chrX 323559 323613 flea 49 5109 18.0 21.5 19.8 2.4 5164 chrX 318449 intron,intron CG3777 +,CG32816 - chrX 321031 intron,intron CG3777 +,CG32816 - chrX 323613 intron,intron CG3777 +,CG32816 - chrX_49_320001 chrX_320001 RAL-303_100b 4966 chrX 342480 342524 chrX 342639 342683 17 159 23.0 35.0 29.0 0.6 203 chrX 342480 intron,intron CG3777 +,CG32816 - chrX 342582 intron,intron CG3777 +,CG32816 - chrX 342683 intron,intron CG3777 +,CG32816 - chrX_17_340001 chrX_340001 RAL-303_100b 4967 chrX 424101 424160 chrX 424398 424457 21 293 39.0 34.5 36.8 0.6 356 chrX 424101 intron CG32816 - chrX 424279 intron CG32816 - chrX 424457 intron CG32816 - chrX_21_420001 chrX_420001 RAL-303_100b 4968 chrX 428396 428452 chrX 434606 434662 3S18 52 6208 14.5 9.5 12.0 4.0 6266 chrX 428396 intron CG32816 - chrX 431529 intron CG32816 - chrX 434662 intron CG32816 - chrX_52_430001 chrX_430001 RAL-303_100b 4969 chrX 494582 494623 chrX 494699 494740 18 115 36.0 28.5 32.2 0.5 158 chrX 494582 intergenic CG17778 + chrX 494661 5` UTR CG17778 + chrX 494740 intron CG17778 + chrX_18_490001 chrX_490001 RAL-303_100b 4970 chrX 547616 547663 chrX 547877 547932 20 265 38.5 39.5 39.0 0.5 316 chrX 547616 intron Appl + chrX 547774 intron Appl + chrX 547932 intron Appl + chrX_20_545001 chrX_545001 RAL-303_100b 4971 chrX 551401 551407 chrX 558988 558994 412 4 7587 30.0 14.0 22.0 0.2 7593 chrX 551401 intron Appl + chrX 555198 intron Appl + chrX 558994 intron Appl + chrX_4_555001 chrX_555001 RAL-303_100b 4972 chrX 551408 551455 chrX 558983 559041 412 39 7581 10.5 12.5 11.5 3.1 7633 chrX 551408 intron Appl + chrX 555224 intron Appl + chrX 559041 intron Appl + chrX_39_555001 chrX_555001 RAL-303_100b 4973 chrX 561548 561579 chrX 561669 561674 4 114 54.5 47.0 50.8 0.1 126 chrX 561548 intron Appl + chrX 561611 intron Appl + chrX 561674 intron Appl + chrX_4_560001 chrX_560001 RAL-303_100b 4974 chrX 609863 609867 chrX 609980 609983 5 117 43.5 30.0 36.8 0.1 120 chrX 609863 intron CG13366 - chrX 609923 intron CG13366 - chrX 609983 intron CG13366 - chrX_5_605001 chrX_605001 RAL-303_100b 4975 chrX 609870 609913 chrX 609977 610030 29 114 33.0 29.5 31.2 0.9 160 chrX 609870 intron CG13366 - chrX 609950 intron CG13366 - chrX 610030 intron CG13366 - chrX_29_605001 chrX_605001 RAL-303_100b 4976 chrX 667624 667657 chrX 667733 667766 13 108 51.0 31.5 41.2 0.3 142 chrX 667624 intergenic not near genes chrX 667695 intergenic not near genes chrX 667766 intergenic not near genes chrX_13_665001 chrX_665001 RAL-303_100b 4977 chrX 667662 667684 chrX 667730 667793 7 99 40.0 32.0 36.0 0.2 131 chrX 667662 intergenic not near genes chrX 667728 intergenic not near genes chrX 667793 intergenic not near genes chrX_7_665001 chrX_665001 RAL-303_100b 4978 chrX 670226 670295 chrX 670343 670400 21 102 34.5 32.5 33.5 0.6 174 chrX 670226 intergenic not near genes chrX 670313 intergenic not near genes chrX 670400 intergenic not near genes chrX_21_670001 chrX_670001 RAL-303_100b 4979 chrX 680812 680860 chrX 680920 680968 15 105 42.5 38.0 40.2 0.4 156 chrX 680812 intergenic not near genes chrX 680890 intergenic not near genes chrX 680968 intergenic not near genes chrX_15_680001 chrX_680001 RAL-303_100b 4980 chrX 701735 701735 chrX 12946234 12946235 5 12244499 54.0 55.0 54.5 0.1 12244500 chrX 701735 intron sdk + chrX 6823985 exon Atx-1 + chrX 12946235 3` UTR fne + chrX_5_6820001 chrX_6820001 RAL-303_100b 4981 chrX 706771 706826 chrX 707168 707215 15 387 30.0 36.5 33.2 0.4 444 chrX 706771 intron sdk + chrX 706993 intron sdk + chrX 707215 intron sdk + chrX_15_705001 chrX_705001 RAL-303_100b 4982 chrX 736910 736937 chrX 737016 737043 5 105 31.5 34.5 33.0 0.1 133 chrX 736910 intron sdk + chrX 736976 intron sdk + chrX 737043 intron sdk + chrX_5_735001 chrX_735001 RAL-303_100b 4983 chrX 778105 778156 chrX 778216 778234 24 111 41.0 39.5 40.2 0.6 129 chrX 778105 intron fz3 + chrX 778170 intron fz3 + chrX 778234 intron fz3 + chrX_24_775001 chrX_775001 RAL-303_100b 4984 chrX 802272 802289 chrX 802365 802386 15 98 37.5 27.5 32.5 0.4 114 chrX 802272 exon CG13359 - chrX 802329 exon CG13359 - chrX 802386 exon CG13359 - chrX_15_800001 chrX_800001 RAL-303_100b 4985 chrX 802291 802321 chrX 802362 802411 11 94 30.5 28.5 29.5 0.4 120 chrX 802291 exon CG13359 - chrX 802351 exon CG13359 - chrX 802411 exon CG13359 - chrX_11_800001 chrX_800001 RAL-303_100b 4986 chrX 806754 806768 chrX 806879 806901 7 130 34.5 32.0 33.2 0.2 147 chrX 806754 intron Sec22 + chrX 806828 intron Sec22 + chrX 806901 intron Sec22 + chrX_7_805001 chrX_805001 RAL-303_100b 4987 chrX 806770 806776 chrX 806878 806903 4 122 32.0 31.5 31.8 0.1 133 chrX 806770 intron Sec22 + chrX 806836 intron Sec22 + chrX 806903 intron Sec22 + chrX_4_805001 chrX_805001 RAL-303_100b 4988 chrX 812254 812300 chrX 817897 817930 297 27 5649 13.5 14.0 13.8 1.8 5676 chrX 812254 intron CG43867 - chrX 815092 intron CG43867 - chrX 817930 intron CG43867 - chrX_27_815001 chrX_815001 RAL-303_100b 4989 chrX 827583 827587 chrX 835400 835404 roo 6 7817 26.5 11.5 19.0 0.3 7821 chrX 827583 intron CG43867 - chrX 831494 intron CG43867 - chrX 835404 intron CG43867 - chrX_6_830001 chrX_830001 RAL-303_100b 4990 chrX 827597 827630 chrX 835394 835447 roo 28 7811 11.5 9.0 10.2 2.5 7850 chrX 827597 intron CG43867 - chrX 831522 intron CG43867 - chrX 835447 intron CG43867 - chrX_28_830001 chrX_830001 RAL-303_100b 4991 chrX 847955 847998 chrX 848042 848095 17 96 37.0 36.5 36.8 0.4 140 chrX 847955 intron CG43867 - chrX 848025 intron CG43867 - chrX 848095 intron CG43867 - chrX_17_845001 chrX_845001 RAL-303_100b 4992 chrX 868476 868486 chrX 868577 868588 6 102 54.5 44.5 49.5 0.1 112 chrX 868476 intron CG43867 - chrX 868532 intron CG43867 - chrX 868588 intron CG43867 - chrX_6_865001 chrX_865001 RAL-303_100b 4993 chrX 868488 868515 chrX 868570 868602 13 89 45.0 43.0 44.0 0.3 114 chrX 868488 intron CG43867 - chrX 868545 intron CG43867 - chrX 868602 intron CG43867 - chrX_13_865001 chrX_865001 RAL-303_100b 4994 chrX 882214 882263 chrX 882326 882375 34 111 37.5 36.0 36.8 0.9 161 chrX 882214 intron CG43867 - chrX 882294 intron CG43867 - chrX 882375 intron CG43867 - chrX_34_880001 chrX_880001 RAL-303_100b 4995 chrX 906677 906733 chrX 908491 908542 S-element 41 1810 14.0 24.0 19.0 2.0 1865 chrX 906677 intron CG43867 - chrX 907610 intron CG43867 - chrX 908542 intron CG43867 - chrX_41_905001 chrX_905001 RAL-303_100b 4996 chrX 921143 921199 chrX 923026 923082 24 1885 90.5 73.5 82.0 0.3 1939 chrX 921143 intron CG43867 - chrX 922112 intron CG43867 - chrX 923082 intron,3` UTR CG43867 -,CG3711 - chrX_24_920001 chrX_920001 RAL-303_100b 4997 chrX 957267 957328 chrX 957373 957429 24 101 38.0 34.5 36.2 0.6 162 chrX 957267 intergenic not near genes chrX 957348 intergenic not near genes chrX 957429 intergenic not near genes chrX_24_955001 chrX_955001 RAL-303_100b 4998 chrX 1033384 1033384 chrX 1041036 1041042 412 4 7655 8.0 33.5 20.8 0.2 7658 chrX 1033384 intron su(w[a]) + chrX 1037213 intron su(w[a]) + chrX 1041042 intron su(w[a]) + chrX_4_1035001 chrX_1035001 RAL-303_100b 4999 chrX 1051058 1051062 chrX 1051161 1051165 5 103 38.0 29.5 33.8 0.1 107 chrX 1051058 intron CR44779 + chrX 1051112 intron CR44779 + chrX 1051165 intron CR44779 + chrX_5_1050001 chrX_1050001 RAL-303_100b 5000 chrX 1051063 1051069 chrX 1051159 1051172 8 102 34.5 27.0 30.8 0.3 109 chrX 1051063 intron CR44779 + chrX 1051118 intron CR44779 + chrX 1051172 intron CR44779 + chrX_8_1050001 chrX_1050001 RAL-303_100b 5001 chrX 1051070 1051095 chrX 1051134 1051178 22 99 25.0 24.5 24.8 0.9 108 chrX 1051070 intron CR44779 + chrX 1051124 intron CR44779 + chrX 1051178 intron CR44779 + chrX_22_1050001 chrX_1050001 RAL-303_100b 5002 chrX 1053118 1053120 chrX 16983076 16983077 5 15929957 32.5 73.5 53.0 0.1 15929959 chrX 1053118 intron CR44779 + chrX 9018098 intron,intron rdgA +,CR43836 - chrX 16983077 intron CG45002 - chrX_5_9015001 chrX_9015001 RAL-303_100b 5003 chrX 1063734 1063749 chrX 1072552 1072567 roo 9 8817 28.0 17.5 22.8 0.4 8833 chrX 1063734 intron CR44779 + chrX 1068150 intron CR44779 + chrX 1072567 intron CR44779 + chrX_9_1065001 chrX_1065001 RAL-303_100b 5004 chrX 1191925 1191973 chrX 1192026 1192053 17 97 39.0 32.0 35.5 0.5 128 chrX 1191925 intron CG11380 + chrX 1191989 intron CG11380 + chrX 1192053 intron CG11380 + chrX_17_1190001 chrX_1190001 RAL-303_100b 5005 chrX 1197582 1197586 chrX 1197855 1197859 4 273 44.5 41.0 42.8 0.1 277 chrX 1197582 intergenic not near genes chrX 1197720 intergenic not near genes chrX 1197859 intergenic not near genes chrX_4_1195001 chrX_1195001 RAL-303_100b 5006 chrX 1197587 1197636 chrX 1197854 1197909 22 266 36.0 41.5 38.8 0.6 322 chrX 1197587 intergenic not near genes chrX 1197748 intergenic not near genes chrX 1197909 intergenic not near genes chrX_22_1195001 chrX_1195001 RAL-303_100b 5007 chrX 1202538 1202545 chrX 1202640 1202646 4 101 47.0 34.0 40.5 0.1 108 chrX 1202538 exon CG14625 + chrX 1202592 exon CG14625 + chrX 1202646 exon CG14625 + chrX_4_1200001 chrX_1200001 RAL-303_100b 5008 chrX 1253716 1253764 chrX 1253814 1253871 47 105 11.0 16.5 13.8 3.2 155 chrX 1253716 intron Atf3 - chrX 1253794 intron Atf3 - chrX 1253871 intron Atf3 - chrX_47_1250001 chrX_1250001 RAL-303_100b 5009 chrX 1277205 1277255 chrX 1277399 1277408 13 183 39.0 33.0 36.0 0.4 203 chrX 1277205 intergenic not near genes chrX 1277306 intergenic not near genes chrX 1277408 intergenic not near genes chrX_13_1275001 chrX_1275001 RAL-303_100b 5010 chrX 1357753 1357769 chrX 1367948 1367964 Doc 12 10195 34.0 16.0 25.0 0.5 10211 chrX 1357753 intergenic png - chrX 1362858 intergenic not near genes chrX 1367964 intergenic not near genes chrX_12_1360001 chrX_1360001 RAL-303_100b 5011 chrX 1357773 1357813 chrX 1367947 1367976 Doc 30 10191 13.0 16.0 14.5 1.9 10203 chrX 1357773 intergenic png - chrX 1362874 intergenic not near genes chrX 1367976 intergenic not near genes chrX_30_1360001 chrX_1360001 RAL-303_100b 5012 chrX 1387005 1387031 chrX 1387106 1387107 10 98 25.0 30.0 27.5 0.4 102 chrX 1387005 intron CG32813 + chrX 1387056 intron CG32813 + chrX 1387107 intron CG32813 + chrX_10_1385001 chrX_1385001 RAL-303_100b 5013 chrX 1416372 1416424 chrX 1416471 1416524 10 90 27.0 35.5 31.2 0.3 152 chrX 1416372 intron futsch + chrX 1416448 intron futsch + chrX 1416524 intron futsch + chrX_10_1415001 chrX_1415001 RAL-303_100b 5014 chrX 1418827 1418877 chrX 1418982 1419032 13 142 38.5 35.0 36.8 0.3 205 chrX 1418827 intron futsch + chrX 1418930 intron futsch + chrX 1419032 intron futsch + chrX_13_1415001 chrX_1415001 RAL-303_100b 5015 chrX 1423625 1423679 chrX 1423748 1423802 13 115 36.5 27.0 31.8 0.4 177 chrX 1423625 intron futsch + chrX 1423714 intron futsch + chrX 1423802 intron futsch + chrX_13_1420001 chrX_1420001 RAL-303_100b 5016 chrX 1503533 1503585 chrX 1503642 1503694 22 103 37.0 30.0 33.5 0.6 161 chrX 1503533 intron,intron inc +,Nmdar2 - chrX 1503614 intron,intron inc +,Nmdar2 - chrX 1503694 intron,intron inc +,Nmdar2 - chrX_22_1500001 chrX_1500001 RAL-303_100b 5017 chrX 1518016 1518072 chrX 1523443 1523499 jockey 44 5425 12.5 16.0 14.2 2.9 5483 chrX 1518016 intergenic inc + chrX 1520758 intergenic not near genes chrX 1523499 intergenic not near genes chrX_44_1520001 chrX_1520001 RAL-303_100b 5018 chrX 1560633 1560666 chrX 1560750 1560760 13 112 38.0 32.0 35.0 0.4 127 chrX 1560633 intron Mur2B - chrX 1560696 intron Mur2B - chrX 1560760 intron Mur2B - chrX_13_1560001 chrX_1560001 RAL-303_100b 5019 chrX 1627969 1627990 chrX 1635451 1635467 gtwin 10 7485 16.0 24.0 20.0 0.5 7498 chrX 1627969 intron,intron Mur2B -,br + chrX 1631718 intron,intron Mur2B -,br + chrX 1635467 intron,intron Mur2B -,br + chrX_10_1630001 chrX_1630001 RAL-303_100b 5020 chrX 1762621 1762662 chrX 1762718 1762772 19 100 37.0 40.0 38.5 0.5 151 chrX 1762621 intergenic not near genes chrX 1762696 intergenic not near genes chrX 1762772 intergenic not near genes chrX_19_1760001 chrX_1760001 RAL-303_100b 5021 chrX 1828077 1828083 chrX 1828180 1828184 4 98 77.0 63.0 70.0 0.1 107 chrX 1828077 intron CG42666 + chrX 1828130 intron CG42666 + chrX 1828184 intron CG42666 + chrX_4_1825001 chrX_1825001 RAL-303_100b 5022 chrX 1930515 1930524 chrX 1938111 1938120 opus 7 7595 18.0 14.0 16.0 0.4 7605 chrX 1930515 3` UTR CG11596 + chrX 1934318 intergenic not near genes chrX 1938120 3` UTR CG3857 - chrX_7_1930001 chrX_1930001 RAL-303_100b 5023 chrX 1930525 1930569 chrX 1938107 1938163 opus 36 7590 7.5 13.0 10.2 3.2 7638 chrX 1930525 intergenic CG11596 + chrX 1934344 intergenic not near genes chrX 1938163 3` UTR CG3857 - chrX_36_1930001 chrX_1930001 RAL-303_100b 5024 chrX 1954864 1954918 chrX 1962829 1962883 Stalker2 19 7956 9.0 14.0 11.5 1.5 8019 chrX 1954864 intron Hr4 + chrX 1958874 intron Hr4 + chrX 1962883 intron Hr4 + chrX_19_1955001 chrX_1955001 RAL-303_100b 5025 chrX 1974232 1974283 chrX 1974348 1974376 19 113 42.0 37.0 39.5 0.5 144 chrX 1974232 intron Hr4 + chrX 1974304 intron Hr4 + chrX 1974376 intron Hr4 + chrX_19_1970001 chrX_1970001 RAL-303_100b 5026 chrX 2023938 2023960 chrX 2024086 2024108 9 146 61.0 71.5 66.2 0.1 170 chrX 2023938 3` UTR,3` UTR east +,Actn - chrX 2024023 3` UTR,3` UTR east +,Actn - chrX 2024108 3` UTR,3` UTR east +,Actn - chrX_9_2020001 chrX_2020001 RAL-303_100b 5027 chrX 2023964 2023986 chrX 2024079 2024134 7 138 56.0 69.5 62.8 0.1 170 chrX 2023964 3` UTR,3` UTR east +,Actn - chrX 2024049 3` UTR,3` UTR east +,Actn - chrX 2024134 3` UTR,3` UTR east +,Actn - chrX_7_2020001 chrX_2020001 RAL-303_100b 5028 chrX 2020871 2020913 chrX 2025570 2025617 23 4700 82.5 57.0 69.8 0.3 4746 chrX 2020871 exon east + chrX 2023244 3` UTR east + chrX 2025617 exon Actn - chrX_23_2020001 chrX_2020001 RAL-303_100b 5029 chrX 2071423 2071463 chrX 2071588 2071606 8 163 28.5 34.5 31.5 0.2 183 chrX 2071423 exon CG4199 - chrX 2071514 5` UTR CG4199 - chrX 2071606 intron CG4199 - chrX_8_2070001 chrX_2070001 RAL-303_100b 5030 chrX 2095911 2095951 chrX 2096012 2096041 14 98 31.0 14.0 22.5 0.6 130 chrX 2095911 intron csw + chrX 2095976 intron csw + chrX 2096041 intron csw + chrX_14_2095001 chrX_2095001 RAL-303_100b 5031 chrX 2308820 2308826 chrX 2317426 2317432 Tirant 4 8606 17.0 41.0 29.0 0.1 8612 chrX 2308820 intron phl + chrX 2313126 intron phl + chrX 2317432 intron phl + chrX_4_2310001 chrX_2310001 RAL-303_100b 5032 chrX 2399812 2399871 chrX 2408188 2408237 roo 35 8370 14.5 10.0 12.2 2.7 8425 chrX 2399812 intergenic not near genes chrX 2404024 intergenic not near genes chrX 2408237 intergenic not near genes chrX_35_2400001 chrX_2400001 RAL-303_100b 5033 chrX 2429651 2429662 chrX 2429757 2429768 4 106 33.0 44.5 38.8 0.1 117 chrX 2429651 intergenic not near genes chrX 2429710 intergenic not near genes chrX 2429768 intergenic not near genes chrX_4_2425001 chrX_2425001 RAL-303_100b 5034 chrX 2539251 2539281 chrX 2539497 2539527 14 245 37.0 38.0 37.5 0.4 276 chrX 2539251 intron trol - chrX 2539389 intron trol - chrX 2539527 intron trol - chrX_14_2535001 chrX_2535001 RAL-303_100b 5035 chrX 2578793 2578846 chrX 2578905 2578975 39 121 14.0 11.0 12.5 2.9 182 chrX 2578793 intergenic Pdfr +,Vha36-3 - chrX 2578884 intergenic Vha36-3 -,Pdfr + chrX 2578975 intergenic Vha36-3 -,Pdfr + chrX_39_2575001 chrX_2575001 RAL-303_100b 5036 chrX 2610365 2610413 chrX 2617505 2617555 HMS-Beagle 10 7140 10.5 14.5 12.5 0.7 7190 chrX 2610365 intergenic CG8636 - chrX 2613960 intergenic not near genes chrX 2617555 intergenic Tsp3A - chrX_10_2610001 chrX_2610001 RAL-303_100b 5037 chrX 2638333 2638381 chrX 2638452 2638496 12 121 32.0 38.5 35.2 0.3 163 chrX 2638333 intron sgg + chrX 2638414 intron sgg + chrX 2638496 intron sgg + chrX_12_2635001 chrX_2635001 RAL-303_100b 5038 chrX 2664362 2664386 chrX 2665533 2665557 1360 18 1169 20.5 16.0 18.2 0.9 1195 chrX 2664362 intron sgg + chrX 2664960 intron sgg + chrX 2665557 intron sgg + chrX_18_2660001 chrX_2660001 RAL-303_100b 5039 chrX 2664387 2664413 chrX 2665531 2665584 1360 24 1167 14.0 14.5 14.2 1.6 1197 chrX 2664387 intron sgg + chrX 2664986 intron sgg + chrX 2665584 intron sgg + chrX_24_2660001 chrX_2660001 RAL-303_100b 5040 chrX 2698908 2698949 chrX 2699046 2699057 5 131 46.0 54.5 50.2 0.1 149 chrX 2698908 exon CG2662 + chrX 2698982 intron CG2662 + chrX 2699057 exon CG2662 + chrX_5_2695001 chrX_2695001 RAL-303_100b 5041 chrX 2776223 2776247 chrX 2776338 2776350 5 109 19.5 20.0 19.8 0.2 127 chrX 2776223 intron kirre + chrX 2776286 intron kirre + chrX 2776350 intron kirre + chrX_5_2775001 chrX_2775001 RAL-303_100b 5042 chrX 2823769 2823778 chrX 2832341 2832351 roo 8 8573 29.0 10.5 19.8 0.4 8582 chrX 2823769 intron kirre + chrX 2828060 intron kirre + chrX 2832351 intron kirre + chrX_8_2825001 chrX_2825001 RAL-303_100b 5043 chrX 2844875 2844931 chrX 2852310 2852366 mdg1 43 7433 10.0 13.0 11.5 3.4 7491 chrX 2844875 intron kirre + chrX 2848620 intron kirre + chrX 2852366 intron kirre + chrX_43_2845001 chrX_2845001 RAL-303_100b 5044 chrX 2863725 2863778 chrX 2864223 2864275 21 491 35.5 31.5 33.5 0.6 550 chrX 2863725 intron kirre + chrX 2864000 intron kirre + chrX 2864275 intron kirre + chrX_21_2860001 chrX_2860001 RAL-303_100b 5045 chrX 2920715 2920763 chrX 2920862 2920910 8 137 32.0 40.5 36.2 0.2 195 chrX 2920715 intron,intron kirre +,CG3588 + chrX 2920812 intron,intron kirre +,CG3588 + chrX 2920910 intron,intron kirre +,CG3588 + chrX_8_2920001 chrX_2920001 RAL-303_100b 5046 chrX 2920758 2920887 chrX 2921198 2921257 9 402 61.0 79.5 70.2 0.1 499 chrX 2920758 intron,intron kirre +,CG3588 + chrX 2921008 intron,intron kirre +,CG3588 + chrX 2921257 intron,intron kirre +,CG3588 + chrX_9_2920001 chrX_2920001 RAL-303_100b 5047 chrX 2951244 2951292 chrX 2951347 2951406 9 105 7.0 14.0 10.5 0.8 162 chrX 2951244 intron,3` UTR kirre +,rst - chrX 2951325 intron,3` UTR kirre +,rst - chrX 2951406 intron,3` UTR kirre +,rst - chrX_9_2950001 chrX_2950001 RAL-303_100b 5048 chrX 2967161 2967212 chrX 2967296 2967347 11 131 24.5 21.5 23.0 0.5 186 chrX 2967161 intron,intron kirre +,rst - chrX 2967254 intron,intron kirre +,rst - chrX 2967347 intron,intron kirre +,rst - chrX_11_2965001 chrX_2965001 RAL-303_100b 5049 chrX 3038713 3038768 chrX 3038826 3038881 26 109 37.0 37.0 37.0 0.7 168 chrX 3038713 intron kirre + chrX 3038797 intron kirre + chrX 3038881 intron kirre + chrX_26_3035001 chrX_3035001 RAL-303_100b 5050 chrX 3057996 3058052 chrX 3058262 3058306 pogo 36 264 12.5 11.0 11.8 2.8 310 chrX 3057996 intron kirre + chrX 3058151 intron kirre + chrX 3058306 intron kirre + chrX_36_3055001 chrX_3055001 RAL-303_100b 5051 chrX 3075605 3075613 chrX 3080941 3080945 Transpac 7 5335 33.0 12.5 22.8 0.3 5340 chrX 3075605 intron kirre + chrX 3078275 intron kirre + chrX 3080945 intron kirre + chrX_7_3075001 chrX_3075001 RAL-303_100b 5052 chrX 3075615 3075667 chrX 3080940 3080996 Transpac 25 5326 7.0 12.5 9.8 2.3 5381 chrX 3075615 intron kirre + chrX 3078306 intron kirre + chrX 3080996 intron kirre + chrX_25_3075001 chrX_3075001 RAL-303_100b 5053 chrX 3082570 3082605 chrX 3082670 3082707 24 98 21.5 18.0 19.8 1.2 137 chrX 3082570 intron kirre + chrX 3082638 intron kirre + chrX 3082707 intron kirre + chrX_24_3080001 chrX_3080001 RAL-303_100b 5054 chrX 3103459 3103475 chrX 3103570 3103586 5 110 32.5 24.5 28.5 0.2 127 chrX 3103459 intron kirre + chrX 3103522 intron kirre + chrX 3103586 intron kirre + chrX_5_3100001 chrX_3100001 RAL-303_100b 5055 chrX 3109420 3109473 chrX 3109522 3109540 23 100 30.0 32.0 31.0 0.7 120 chrX 3109420 intron kirre + chrX 3109480 intron kirre + chrX 3109540 intron kirre + chrX_23_3105001 chrX_3105001 RAL-303_100b 5056 chrX 3114356 3114361 chrX 3114472 3114477 4 116 1.0 5.5 3.2 1.0 121 chrX 3114356 intron kirre + chrX 3114416 intron kirre + chrX 3114477 intron kirre + chrX_4_3110001 chrX_3110001 RAL-303_100b 5057 chrX 3116707 3116762 chrX 3117379 3117434 22 670 35.0 18.5 26.8 0.8 727 chrX 3116707 intron kirre + chrX 3117070 intron kirre + chrX 3117434 intron kirre + chrX_22_3115001 chrX_3115001 RAL-303_100b 5058 chrX 3120087 3120095 chrX 3120162 3120198 5 85 14.5 30.0 22.2 0.2 111 chrX 3120087 intron kirre + chrX 3120142 intron kirre + chrX 3120198 intron kirre + chrX_5_3120001 chrX_3120001 RAL-303_100b 5059 chrX 3178483 3178499 chrX 3186171 3186187 opus 4 7688 10.0 23.0 16.5 0.2 7704 chrX 3178483 intron dnc + chrX 3182335 intron dnc + chrX 3186187 intron dnc + chrX_4_3180001 chrX_3180001 RAL-303_100b 5060 chrX 3197741 3197794 chrX 3197878 3197906 19 138 30.0 28.5 29.2 0.6 165 chrX 3197741 intron dnc + chrX 3197824 intron dnc + chrX 3197906 intron dnc + chrX_19_3195001 chrX_3195001 RAL-303_100b 5061 chrX 3203438 3203487 chrX 3203662 3203701 22 220 34.5 19.5 27.0 0.8 263 chrX 3203438 intron dnc + chrX 3203570 intron dnc + chrX 3203701 intron dnc + chrX_22_3200001 chrX_3200001 RAL-303_100b 5062 chrX 3206493 3206504 chrX 3206568 3206573 8 92 3.0 17.0 10.0 0.7 80 chrX 3206493 intron dnc + chrX 3206533 intron dnc + chrX 3206573 intron dnc + chrX_8_3205001 chrX_3205001 RAL-303_100b 5063 chrX 3218489 3218539 chrX 3227663 3227713 roo 11 9174 7.0 15.0 11.0 0.9 9224 chrX 3218489 intron dnc + chrX 3223101 intron dnc + chrX 3227713 intron dnc + chrX_11_3220001 chrX_3220001 RAL-303_100b 5064 chrX 3243617 3243654 chrX 3243732 3243768 13 113 32.0 38.0 35.0 0.4 151 chrX 3243617 intron dnc + chrX 3243692 intron dnc + chrX 3243768 intron dnc + chrX_13_3240001 chrX_3240001 RAL-303_100b 5065 chrX 3295708 3295714 chrX 3295828 3295834 5 120 27.5 32.5 30.0 0.2 126 chrX 3295708 intron dnc + chrX 3295771 intron dnc + chrX 3295834 intron dnc + chrX_5_3295001 chrX_3295001 RAL-303_100b 5066 chrX 3306318 3306375 chrX 3306425 3306482 41 107 16.0 9.0 12.5 3.0 164 chrX 3306318 intron dnc + chrX 3306400 intron dnc + chrX 3306482 intron dnc + chrX_41_3305001 chrX_3305001 RAL-303_100b 5067 chrX 3351782 3351810 chrX 3351893 3351921 7 108 17.0 30.0 23.5 0.3 139 chrX 3351782 intergenic not near genes chrX 3351852 intergenic not near genes chrX 3351921 intergenic not near genes chrX_7_3350001 chrX_3350001 RAL-303_100b 5068 chrX 3414995 3415048 chrX 3421206 3421258 3S18 34 6206 6.5 10.5 8.5 3.6 6263 chrX 3414995 intron,intron CR44999 +,CG12535 - chrX 3418126 intron,intron CR44999 +,CG12535 - chrX 3421258 intron,intron CR44999 +,CG12535 - chrX_34_3415001 chrX_3415001 RAL-303_100b 5069 chrX 3436976 3436979 chrX 3437160 3437171 4 188 28.5 28.5 28.5 0.1 195 chrX 3436976 intron,intron CR44999 +,CG12535 - chrX 3437074 intron,intron CR44999 +,CG12535 - chrX 3437171 intron,intron CR44999 +,CG12535 - chrX_4_3435001 chrX_3435001 RAL-303_100b 5070 chrX 3459957 3460014 chrX 3460067 3460124 30 108 35.5 31.5 33.5 0.9 167 chrX 3459957 intron,intron CR44999 +,CG16782 - chrX 3460040 intron,5` UTR CR44999 +,CG16782 - chrX 3460124 intron,5` UTR CR44999 +,CG16782 - chrX_30_3460001 chrX_3460001 RAL-303_100b 5071 chrX 3493064 3493122 chrX 3502248 3502295 roo 34 9180 11.5 9.5 10.5 3.0 9231 chrX 3493064 intron,intron CR44999 +,Gas8 - chrX 3497680 intron,intron CR44999 +,Gas8 - chrX 3502295 intron,intron CR44999 +,Gas8 - chrX_34_3495001 chrX_3495001 RAL-303_100b 5072 chrX 3513736 3513788 chrX 3513844 3513896 24 106 26.0 23.5 24.8 0.9 160 chrX 3513736 intron,intron CR44999 +,CG32791 - chrX 3513816 intron,intron CR44999 +,CG32791 - chrX 3513896 intron,intron CR44999 +,CG32791 - chrX_24_3510001 chrX_3510001 RAL-303_100b 5073 chrX 3516795 3516851 chrX 3516919 3516968 18 120 28.0 37.0 32.5 0.5 173 chrX 3516795 intron,intron CR44999 +,CG32791 - chrX 3516882 intron,intron CR44999 +,CG32791 - chrX 3516968 intron,intron CR44999 +,CG32791 - chrX_18_3515001 chrX_3515001 RAL-303_100b 5074 chrX 3597529 3597542 chrX 3619722 3619735 roo 14 22192 32.0 14.5 23.2 0.6 22206 chrX 3597529 intron AstA-R1 + chrX 3608632 intron AstA-R1 + chrX 3619735 intron AstA-R1 + chrX_14_3605001 chrX_3605001 RAL-303_100b 5075 chrX 3597543 3597583 chrX 3619716 3619778 roo 34 22191 14.5 12.5 13.5 2.3 22235 chrX 3597543 intron AstA-R1 + chrX 3608660 intron AstA-R1 + chrX 3619778 intron AstA-R1 + chrX_34_3605001 chrX_3605001 RAL-303_100b 5076 chrX 3620445 3620491 chrX 3620569 3620574 16 121 25.0 32.5 28.8 0.5 129 chrX 3620445 intron AstA-R1 + chrX 3620510 intron AstA-R1 + chrX 3620574 intron AstA-R1 + chrX_16_3620001 chrX_3620001 RAL-303_100b 5077 chrX 3630518 3630574 chrX 3630619 3630672 42 98 13.5 9.5 11.5 3.4 154 chrX 3630518 intron AstA-R1 + chrX 3630595 intron AstA-R1 + chrX 3630672 intron AstA-R1 + chrX_42_3630001 chrX_3630001 RAL-303_100b 5078 chrX 3640306 3640312 chrX 3640435 3640442 4 130 8.5 15.0 11.8 0.3 136 chrX 3640306 intron AstA-R1 + chrX 3640374 intron AstA-R1 + chrX 3640442 intron AstA-R1 + chrX_4_3640001 chrX_3640001 RAL-303_100b 5079 chrX 3657388 3657446 chrX 3657493 3657551 43 101 8.0 6.5 7.2 5.2 163 chrX 3657388 intron AstA-R1 + chrX 3657470 intron AstA-R1 + chrX 3657551 intron AstA-R1 + chrX_43_3655001 chrX_3655001 RAL-303_100b 5080 chrX 3662483 3662496 chrX 3662590 3662605 8 109 43.5 44.5 44.0 0.2 122 chrX 3662483 intron AstA-R1 + chrX 3662544 intron AstA-R1 + chrX 3662605 intron AstA-R1 + chrX_8_3660001 chrX_3660001 RAL-303_100b 5081 chrX 3703694 3703725 chrX 3703807 3703813 4 102 33.0 38.0 35.5 0.1 119 chrX 3703694 intergenic CR45102 + chrX 3703754 intergenic CR45102 + chrX 3703813 intergenic not near genes chrX_4_3700001 chrX_3700001 RAL-303_100b 5082 chrX 3713077 3713136 chrX 3713210 3713270 38 132 9.0 10.5 9.8 3.5 193 chrX 3713077 intron Rala - chrX 3713174 intron Rala - chrX 3713270 intron Rala - chrX_38_3710001 chrX_3710001 RAL-303_100b 5083 chrX 3726743 3726791 chrX 3730165 3730208 NOF 27 3421 11.5 9.5 10.5 2.3 3465 chrX 3726743 intron tlk + chrX 3728476 intron tlk + chrX 3730208 intron tlk + chrX_27_3725001 chrX_3725001 RAL-303_100b 5084 chrX 3752387 3752399 chrX 3764761 3764773 17.6 7 12374 43.5 42.5 43.0 0.2 12386 chrX 3752387 intron tlk + chrX 3758580 intron tlk + chrX 3764773 intron tlk + chrX_7_3755001 chrX_3755001 RAL-303_100b 5085 chrX 3768252 3768285 chrX 3768354 3768376 8 94 33.5 35.0 34.2 0.2 124 chrX 3768252 intron tlk + chrX 3768314 intron tlk + chrX 3768376 intron tlk + chrX_8_3765001 chrX_3765001 RAL-303_100b 5086 chrX 3840243 3840250 chrX 3840344 3840356 6 105 33.0 35.5 34.2 0.2 113 chrX 3840243 intron ec + chrX 3840300 intron ec + chrX 3840356 intron ec + chrX_6_3840001 chrX_3840001 RAL-303_100b 5087 chrX 3842295 3842353 chrX 3842561 3842619 pogo 32 258 10.0 11.0 10.5 2.8 324 chrX 3842295 intron ec + chrX 3842457 intron ec + chrX 3842619 intron ec + chrX_32_3840001 chrX_3840001 RAL-303_100b 5088 chrX 3862792 3862808 chrX 3862901 3862917 9 109 25.0 14.5 19.8 0.4 125 chrX 3862792 intergenic yin - chrX 3862854 intergenic yin - chrX 3862917 intergenic yin - chrX_9_3860001 chrX_3860001 RAL-303_100b 5089 chrX 3862810 3862848 chrX 3862900 3862960 20 108 10.0 13.0 11.5 1.6 150 chrX 3862810 intergenic yin - chrX 3862885 intergenic yin - chrX 3862960 intergenic yin - chrX_20_3860001 chrX_3860001 RAL-303_100b 5090 chrX 3866088 3866125 chrX 3866191 3866228 17 102 29.0 28.0 28.5 0.6 140 chrX 3866088 intron yin - chrX 3866158 intron yin - chrX 3866228 intron yin - chrX_17_3865001 chrX_3865001 RAL-303_100b 5091 chrX 3880460 3880483 chrX 3880546 3880594 8 106 29.0 30.0 29.5 0.3 134 chrX 3880460 intergenic VhaAC39-1 + chrX 3880527 intergenic VhaAC39-1 + chrX 3880594 intergenic VhaAC39-1 + chrX_8_3880001 chrX_3880001 RAL-303_100b 5092 chrX 3881250 3881294 chrX 3881414 3881458 19 162 38.0 39.0 38.5 0.5 208 chrX 3881250 intron VhaAC39-1 + chrX 3881354 intron VhaAC39-1 + chrX 3881458 exon VhaAC39-1 + chrX_19_3880001 chrX_3880001 RAL-303_100b 5093 chrX 3907316 3907369 chrX 3908680 3908698 25 1359 37.0 29.5 33.2 0.7 1382 chrX 3907316 intron CG42541 - chrX 3908007 intron CG42541 - chrX 3908698 intron CG42541 - chrX_25_3905001 chrX_3905001 RAL-303_100b 5094 chrX 3915493 3915552 chrX 3915605 3915649 18 110 25.5 28.0 26.8 0.6 156 chrX 3915493 intron CG42541 - chrX 3915571 intron CG42541 - chrX 3915649 intron CG42541 - chrX_18_3915001 chrX_3915001 RAL-303_100b 5095 chrX 3922143 3922155 chrX 3922426 3922455 9 295 20.5 40.5 30.5 0.3 312 chrX 3922143 intron CG42541 - chrX 3922299 intron CG42541 - chrX 3922455 intron CG42541 - chrX_9_3920001 chrX_3920001 RAL-303_100b 5096 chrX 3950772 3950780 chrX 3950877 3950885 4 104 39.5 33.0 36.2 0.1 113 chrX 3950772 intron Vap-33A + chrX 3950828 intron Vap-33A + chrX 3950885 intron Vap-33A + chrX_4_3950001 chrX_3950001 RAL-303_100b 5097 chrX 3950781 3950829 chrX 3950876 3950932 27 101 33.0 32.5 32.8 0.8 151 chrX 3950781 intron Vap-33A + chrX 3950856 intron Vap-33A + chrX 3950932 intron Vap-33A + chrX_27_3950001 chrX_3950001 RAL-303_100b 5098 chrX 3986842 3986893 chrX 3994495 3994551 412 48 7655 10.0 14.5 12.2 3.6 7709 chrX 3986842 intergenic not near genes chrX 3990696 intergenic not near genes chrX 3994551 intergenic not near genes chrX_48_3990001 chrX_3990001 RAL-303_100b 5099 chrX 3994795 3994819 chrX 3994973 3994997 7 178 19.0 17.5 18.2 0.4 202 chrX 3994795 intergenic not near genes chrX 3994896 intergenic not near genes chrX 3994997 intergenic not near genes chrX_7_3990001 chrX_3990001 RAL-303_100b 5100 chrX 4021142 4021199 chrX 4021263 4021317 25 123 17.0 21.0 19.0 1.2 175 chrX 4021142 intergenic not near genes chrX 4021230 intergenic not near genes chrX 4021317 intergenic not near genes chrX_25_4020001 chrX_4020001 RAL-303_100b 5101 chrX 4029505 4029560 chrX 4029719 4029775 17 212 31.0 35.0 33.0 0.5 270 chrX 4029505 intergenic not near genes chrX 4029640 intergenic not near genes chrX 4029775 intergenic not near genes chrX_17_4025001 chrX_4025001 RAL-303_100b 5102 chrX 4047442 4047499 chrX 4047580 4047623 42 136 14.5 8.0 11.2 3.4 181 chrX 4047442 intergenic CR45482 - chrX 4047532 intergenic CR45482 - chrX 4047623 3` UTR CR45482 - chrX_42_4045001 chrX_4045001 RAL-303_100b 5103 chrX 4048474 4048526 chrX 4048575 4048627 29 101 41.5 39.0 40.2 0.7 153 chrX 4048474 3` UTR CR45482 - chrX 4048550 3` UTR CR45482 - chrX 4048627 3` UTR CR45482 - chrX_29_4045001 chrX_4045001 RAL-303_100b 5104 chrX 4058076 4058108 chrX 4058641 4058690 10 579 21.0 19.5 20.2 0.5 614 chrX 4058076 intergenic not near genes chrX 4058383 intergenic not near genes chrX 4058690 intergenic not near genes chrX_10_4055001 chrX_4055001 RAL-303_100b 5105 chrX 4157869 4157922 chrX 4164929 4165000 297 47 7067 8.0 10.5 9.2 4.6 7131 chrX 4157869 intron Fas2 - chrX 4161434 intron Fas2 - chrX 4165000 intron Fas2 - chrX_47_4160001 chrX_4160001 RAL-303_100b 5106 chrX 4203488 4203543 chrX 4203593 4203635 20 103 38.0 46.0 42.0 0.5 147 chrX 4203488 intron Fas2 - chrX 4203562 intron Fas2 - chrX 4203635 intron Fas2 - chrX_20_4200001 chrX_4200001 RAL-303_100b 5107 chrX 4209907 4209953 chrX 4210022 4210068 10 115 0.0 16.0 8.0 1.1 161 chrX 4209907 intergenic not near genes chrX 4209988 intergenic not near genes chrX 4210068 intergenic not near genes chrX_10_4205001 chrX_4205001 RAL-303_100b 5108 chrX 4216315 4216338 chrX 4216419 4216442 13 104 22.0 20.5 21.2 0.6 127 chrX 4216315 intergenic not near genes chrX 4216378 intergenic CG15571 - chrX 4216442 intergenic CG15571 - chrX_13_4215001 chrX_4215001 RAL-303_100b 5109 chrX 4324368 4324412 chrX 4324470 4324514 26 102 5.5 12.5 9.0 2.6 146 chrX 4324368 intron norpA + chrX 4324441 intron norpA + chrX 4324514 intron norpA + chrX_26_4320001 chrX_4320001 RAL-303_100b 5110 chrX 4389377 4389380 chrX 12946233 12946235 19 8556857 37.5 55.5 46.5 0.4 8556858 chrX 4389377 intron CR32773 - chrX 8667806 intergenic not near genes chrX 12946235 3` UTR fne + chrX_19_8665001 chrX_8665001 RAL-303_100b 5111 chrX 4436459 4436495 chrX 4436540 4436595 11 94 10.0 5.0 7.5 1.3 136 chrX 4436459 intron,intron CR32773 -,bi + chrX 4436527 intron,intron CR32773 -,bi + chrX 4436595 intron,intron CR32773 -,bi + chrX_11_4435001 chrX_4435001 RAL-303_100b 5112 chrX 4515826 4515850 chrX 4515929 4515953 12 102 21.0 27.0 24.0 0.5 127 chrX 4515826 intron CR32773 - chrX 4515890 intron CR32773 - chrX 4515953 intron CR32773 - chrX_12_4515001 chrX_4515001 RAL-303_100b 5113 chrX 4519001 4519016 chrX 4519111 4519125 4 110 42.5 19.5 31.0 0.1 124 chrX 4519001 intron CR32773 - chrX 4519063 intron CR32773 - chrX 4519125 intron CR32773 - chrX_4_4515001 chrX_4515001 RAL-303_100b 5114 chrX 4530815 4530858 chrX 4530905 4530944 28 100 44.5 48.5 46.5 0.6 129 chrX 4530815 intron,intron CR32773 -,CG3556 + chrX 4530880 intron,intron CR32773 -,CG3556 + chrX 4530944 intron,intron CR32773 -,CG3556 + chrX_28_4530001 chrX_4530001 RAL-303_100b 5115 chrX 4598164 4598207 chrX 4598259 4598290 10 94 0.0 0.0 0.0 10.0 126 chrX 4598164 intron CR32773 - chrX 4598227 intron CR32773 - chrX 4598290 intron CR32773 - chrX_10_4595001 chrX_4595001 RAL-303_100b 5116 chrX 4660794 4660827 chrX 4660918 4660948 7 124 38.0 13.5 25.8 0.3 154 chrX 4660794 intron CG3009 - chrX 4660871 intron CG3009 - chrX 4660948 intron CG3009 - chrX_7_4660001 chrX_4660001 RAL-303_100b 5117 chrX 4698049 4698068 chrX 4698158 4698186 10 114 26.0 17.5 21.8 0.4 137 chrX 4698049 intron ctp + chrX 4698118 intron ctp + chrX 4698186 intron ctp + chrX_10_4695001 chrX_4695001 RAL-303_100b 5118 chrX 4698069 4698092 chrX 4698151 4698210 19 113 16.0 15.0 15.5 1.2 141 chrX 4698069 intron ctp + chrX 4698140 intron ctp + chrX 4698210 intron ctp + chrX_19_4695001 chrX_4695001 RAL-303_100b 5119 chrX 4700368 4700427 chrX 4700735 4700754 jockey 47 364 11.0 14.0 12.5 3.5 386 chrX 4700368 3` UTR ctp + chrX 4700561 3` UTR ctp + chrX 4700754 3` UTR ctp + chrX_47_4700001 chrX_4700001 RAL-303_100b 5120 chrX 4717331 4717385 chrX 4717875 4717931 16 544 37.5 21.0 29.2 0.5 600 chrX 4717331 intron Proc-R + chrX 4717631 intron Proc-R + chrX 4717931 intron Proc-R + chrX_16_4715001 chrX_4715001 RAL-303_100b 5121 chrX 4731790 4731803 chrX 4736907 4736921 jockey 9 5118 40.0 14.5 27.2 0.3 5131 chrX 4731790 intergenic not near genes chrX 4734356 intergenic not near genes chrX 4736921 intergenic not near genes chrX_9_4730001 chrX_4730001 RAL-303_100b 5122 chrX 4763232 4763241 chrX 4763745 4763754 Stalker4 8 513 32.5 12.5 22.5 0.3 522 chrX 4763232 intergenic not near genes chrX 4763493 intergenic not near genes chrX 4763754 intergenic not near genes chrX_8_4760001 chrX_4760001 RAL-303_100b 5123 chrX 4763242 4763283 chrX 4763743 4763796 Stalker4 30 509 12.0 11.5 11.8 2.3 554 chrX 4763242 intergenic not near genes chrX 4763519 intergenic not near genes chrX 4763796 intergenic not near genes chrX_30_4760001 chrX_4760001 RAL-303_100b 5124 chrX 4792355 4792400 chrX 4792813 4792858 jockey 28 455 15.0 16.0 15.5 1.7 503 chrX 4792355 intergenic not near genes chrX 4792606 intergenic not near genes chrX 4792858 intergenic not near genes chrX_28_4790001 chrX_4790001 RAL-303_100b 5125 chrX 4815024 4815036 chrX 4815154 4815166 6 129 0.0 22.5 11.2 0.5 142 chrX 4815024 intergenic not near genes chrX 4815095 intergenic not near genes chrX 4815166 intergenic not near genes chrX_6_4815001 chrX_4815001 RAL-303_100b 5126 chrX 4827946 4827989 chrX 4835342 4835385 Stalker4 22 7390 16.5 14.5 15.5 1.3 7439 chrX 4827946 intergenic not near genes chrX 4831666 intergenic not near genes chrX 4835385 intergenic not near genes chrX_22_4830001 chrX_4830001 RAL-303_100b 5127 chrX 4827990 4827999 chrX 4835338 4835395 Stalker4 20 7372 11.0 13.5 12.2 1.5 7405 chrX 4827990 intergenic not near genes chrX 4831692 intergenic not near genes chrX 4835395 intergenic not near genes chrX_20_4830001 chrX_4830001 RAL-303_100b 5128 chrX 4859861 4859917 chrX 4859962 4860013 37 116 11.5 9.5 10.5 3.2 152 chrX 4859861 intron CG42594 + chrX 4859937 intron CG42594 + chrX 4860013 intron CG42594 + chrX_37_4855001 chrX_4855001 RAL-303_100b 5129 chrX 4864144 4864175 chrX 4864247 4864277 18 102 41.0 48.0 44.5 0.4 133 chrX 4864144 intron CG42594 + chrX 4864210 intron CG42594 + chrX 4864277 intron CG42594 + chrX_18_4860001 chrX_4860001 RAL-303_100b 5130 chrX 4878856 4878911 chrX 4878990 4879045 14 134 25.5 19.5 22.5 0.6 189 chrX 4878856 intron CG42594 + chrX 4878950 intron CG42594 + chrX 4879045 intron CG42594 + chrX_14_4875001 chrX_4875001 RAL-303_100b 5131 chrX 4885769 4885803 chrX 4885868 4885921 18 102 18.0 17.5 17.8 1.0 152 chrX 4885769 intron CG42594 + chrX 4885845 intron CG42594 + chrX 4885921 intron CG42594 + chrX_18_4885001 chrX_4885001 RAL-303_100b 5132 chrX 4898241 4898284 chrX 4898344 4898385 10 102 29.5 40.0 34.8 0.3 144 chrX 4898241 intron CG42594 + chrX 4898313 intron CG42594 + chrX 4898385 intron CG42594 + chrX_10_4895001 chrX_4895001 RAL-303_100b 5133 chrX 4902620 4902639 chrX 4902726 4902740 9 104 46.0 40.5 43.2 0.2 120 chrX 4902620 intron CG42594 + chrX 4902680 intron CG42594 + chrX 4902740 intron CG42594 + chrX_9_4900001 chrX_4900001 RAL-303_100b 5134 chrX 4902644 4902672 chrX 4902725 4902762 11 101 39.5 40.0 39.8 0.3 118 chrX 4902644 intron CG42594 + chrX 4902703 intron CG42594 + chrX 4902762 intron CG42594 + chrX_11_4900001 chrX_4900001 RAL-303_100b 5135 chrX 4931324 4931333 chrX 4931443 4931450 5 119 115.5 101.0 108.2 0.0 126 chrX 4931324 intron CG44774 - chrX 4931387 intron CG44774 - chrX 4931450 intron CG44774 - chrX_5_4930001 chrX_4930001 RAL-303_100b 5136 chrX 4931335 4931372 chrX 4931440 4931491 7 111 107.0 100.5 103.8 0.1 156 chrX 4931335 intron CG44774 - chrX 4931413 intron CG44774 - chrX 4931491 intron CG44774 - chrX_7_4930001 chrX_4930001 RAL-303_100b 5137 chrX 4963105 4963110 chrX 4963213 4963218 4 108 32.5 42.0 37.2 0.1 113 chrX 4963105 intron CR44833 - chrX 4963162 intron CR44833 - chrX 4963218 intron CR44833 - chrX_4_4960001 chrX_4960001 RAL-303_100b 5138 chrX 4967910 4967929 chrX 4968021 4968042 6 109 26.0 37.0 31.5 0.2 132 chrX 4967910 intron CR44833 - chrX 4967976 intron CR44833 - chrX 4968042 intron CR44833 - chrX_6_4965001 chrX_4965001 RAL-303_100b 5139 chrX 4990016 4990077 chrX 4997255 4997316 roo 30 7238 11.5 7.5 9.5 2.9 7300 chrX 4990016 intron CR44833 - chrX 4993666 intron CR44833 - chrX 4997316 intron CR44833 - chrX_30_4990001 chrX_4990001 RAL-303_100b 5140 chrX 5055832 5055868 chrX 5055989 5056025 12 155 33.0 31.0 32.0 0.4 193 chrX 5055832 intron,intron CR44833 -,ovo + chrX 5055928 intron,intron CR44833 -,ovo + chrX 5056025 intron,intron CR44833 -,ovo + chrX_12_5055001 chrX_5055001 RAL-303_100b 5141 chrX 5096251 5096282 chrX 5103841 5103872 springer 16 7588 19.5 9.0 14.2 1.1 7621 chrX 5096251 intron,intron CG15465 +,rg + chrX 5100062 intron,intron CG15465 +,rg + chrX 5103872 intron,intron CG15465 +,rg + chrX_16_5100001 chrX_5100001 RAL-303_100b 5142 chrX 5096284 5096306 chrX 5103839 5103866 springer 20 7582 12.0 9.0 10.5 1.7 7582 chrX 5096284 intron,intron CG15465 +,rg + chrX 5100075 intron,intron CG15465 +,rg + chrX 5103866 intron,intron CG15465 +,rg + chrX_20_5100001 chrX_5100001 RAL-303_100b 5143 chrX 5105439 5105460 chrX 5105557 5105572 5 114 7.5 13.5 10.5 0.4 133 chrX 5105439 intron,intron CG15465 +,rg + chrX 5105506 intron,intron CG15465 +,rg + chrX 5105572 intron,intron CG15465 +,rg + chrX_5_5105001 chrX_5105001 RAL-303_100b 5144 chrX 5162237 5162259 chrX 5162466 5162480 10 233 29.5 30.5 30.0 0.3 243 chrX 5162237 intron,intron CG15465 +,rg + chrX 5162358 intron,intron CG15465 +,rg + chrX 5162480 intron,intron CG15465 +,rg + chrX_10_5160001 chrX_5160001 RAL-303_100b 5145 chrX 5220364 5220403 chrX 5220630 5220655 6 261 10.0 23.0 16.5 0.3 291 chrX 5220364 intron,intron CG15465 +,rg + chrX 5220510 intron,intron CG15465 +,rg + chrX 5220655 intron,intron CG15465 +,rg + chrX_6_5220001 chrX_5220001 RAL-303_100b 5146 chrX 5223703 5223720 chrX 5223799 5223823 8 101 33.5 42.5 38.0 0.2 120 chrX 5223703 intron,intron CG15465 +,rg + chrX 5223763 intron,intron CG15465 +,rg + chrX 5223823 intron,intron CG15465 +,rg + chrX_8_5220001 chrX_5220001 RAL-303_100b 5147 chrX 5223725 5223727 chrX 5223782 5223830 5 88 29.5 38.0 33.8 0.1 105 chrX 5223725 intron,intron CG15465 +,rg + chrX 5223778 intron,intron CG15465 +,rg + chrX 5223830 intron,intron CG15465 +,rg + chrX_5_5220001 chrX_5220001 RAL-303_100b 5148 chrX 5264023 5264052 chrX 5264138 5264167 22 115 20.5 13.5 17.0 1.2 144 chrX 5264023 intergenic not near genes chrX 5264095 intergenic not near genes chrX 5264167 intergenic not near genes chrX_22_5260001 chrX_5260001 RAL-303_100b 5149 chrX 5264053 5264074 chrX 5264137 5264189 23 111 12.5 12.5 12.5 1.7 136 chrX 5264053 intergenic not near genes chrX 5264121 intergenic not near genes chrX 5264189 intergenic not near genes chrX_23_5260001 chrX_5260001 RAL-303_100b 5150 chrX 5272794 5272849 chrX 5272906 5272924 41 108 6.0 4.5 5.2 6.6 130 chrX 5272794 intergenic not near genes chrX 5272859 intergenic not near genes chrX 5272924 intergenic not near genes chrX_41_5270001 chrX_5270001 RAL-303_100b 5151 chrX 5338683 5338732 chrX 5339961 5339992 jockey 25 1274 7.5 7.0 7.2 3.0 1309 chrX 5338683 intergenic not near genes chrX 5339338 intergenic not near genes chrX 5339992 intergenic SK + chrX_25_5335001 chrX_5335001 RAL-303_100b 5152 chrX 5345369 5345387 chrX 5345532 5345554 11 167 1.5 22.0 11.8 0.9 185 chrX 5345369 intron SK + chrX 5345462 intron SK + chrX 5345554 intron SK + chrX_11_5345001 chrX_5345001 RAL-303_100b 5153 chrX 5345389 5345397 chrX 5345527 5345564 7 158 1.0 21.0 11.0 0.6 175 chrX 5345389 intron SK + chrX 5345476 intron SK + chrX 5345564 intron SK + chrX_7_5345001 chrX_5345001 RAL-303_100b 5154 chrX 5349253 5349304 chrX 5349355 5349405 46 100 12.0 11.0 11.5 3.7 152 chrX 5349253 intron SK + chrX 5349329 intron SK + chrX 5349405 intron SK + chrX_46_5345001 chrX_5345001 RAL-303_100b 5155 chrX 5350279 5350315 chrX 5350413 5350419 33 129 23.0 28.0 25.5 1.2 140 chrX 5350279 intron SK + chrX 5350349 intron SK + chrX 5350419 intron SK + chrX_33_5350001 chrX_5350001 RAL-303_100b 5156 chrX 5456566 5456573 chrX 5456707 5456714 7 141 32.0 13.5 22.8 0.3 148 chrX 5456566 intron SPR + chrX 5456640 intron SPR + chrX 5456714 intron SPR + chrX_7_5455001 chrX_5455001 RAL-303_100b 5157 chrX 5456575 5456615 chrX 5456705 5456741 29 138 12.5 13.0 12.8 2.1 166 chrX 5456575 intron SPR + chrX 5456658 intron SPR + chrX 5456741 intron SPR + chrX_29_5455001 chrX_5455001 RAL-303_100b 5158 chrX 5473571 5473619 chrX 5473662 5473720 28 92 10.5 9.0 9.8 2.6 149 chrX 5473571 intron SPR + chrX 5473646 intron SPR + chrX 5473720 intron SPR + chrX_28_5470001 chrX_5470001 RAL-303_100b 5159 chrX 5524816 5524860 chrX 5528704 5528708 412 25 3886 11.5 4.5 8.0 2.8 3892 chrX 5524816 intergenic snoRNA:Psi28S-3342 - chrX 5526762 intergenic not near genes chrX 5528708 intergenic Vsx2 - chrX_25_5525001 chrX_5525001 RAL-303_100b 5160 chrX 5566776 5566780 chrX 5566869 5566886 4 102 19.0 27.5 23.2 0.2 110 chrX 5566776 intergenic not near genes chrX 5566831 intergenic not near genes chrX 5566886 intergenic not near genes chrX_4_5565001 chrX_5565001 RAL-303_100b 5161 chrX 5566786 5566786 chrX 5566856 5566892 4 89 18.5 22.0 20.2 0.2 106 chrX 5566786 intergenic not near genes chrX 5566839 intergenic not near genes chrX 5566892 intergenic not near genes chrX_4_5565001 chrX_5565001 RAL-303_100b 5162 chrX 5727400 5727416 chrX 5732164 5732164 Doc 9 4762 13.5 13.5 13.5 0.6 4764 chrX 5727400 intron CG32758 - chrX 5729782 intron CG32758 - chrX 5732164 intron CG32758 - chrX_9_5725001 chrX_5725001 RAL-303_100b 5163 chrX 5792564 5792570 chrX 5792709 5792724 8 153 57.0 15.5 36.2 0.2 160 chrX 5792564 exon CG12239 + chrX 5792644 exon CG12239 + chrX 5792724 exon CG12239 + chrX_8_5790001 chrX_5790001 RAL-303_100b 5164 chrX 5792573 5792579 chrX 5792702 5792731 4 145 54.0 13.5 33.8 0.1 158 chrX 5792573 exon CG12239 + chrX 5792652 exon CG12239 + chrX 5792731 exon CG12239 + chrX_4_5790001 chrX_5790001 RAL-303_100b 5165 chrX 5798855 5798892 chrX 5799023 5799079 32 183 1.5 13.5 7.5 3.8 224 chrX 5798855 intergenic not near genes chrX 5798967 intergenic not near genes chrX 5799079 intergenic not near genes chrX_32_5795001 chrX_5795001 RAL-303_100b 5166 chrX 5883785 5883839 chrX 5884051 5884105 pogo 54 265 13.0 14.5 13.8 3.6 320 chrX 5883785 intron CR45668 - chrX 5883945 intron CR45668 - chrX 5884105 intron CR45668 - chrX_54_5880001 chrX_5880001 RAL-303_100b 5167 chrX 5884137 5884193 chrX 5884403 5884427 pogo 39 261 16.5 11.0 13.8 2.6 290 chrX 5884137 intron CR45668 - chrX 5884282 intron CR45668 - chrX 5884427 intron CR45668 - chrX_39_5880001 chrX_5880001 RAL-303_100b 5168 chrX 5966792 5966800 chrX 5966888 5966897 7 102 22.0 13.5 17.8 0.4 105 chrX 5966792 intron Grip + chrX 5966844 intron Grip + chrX 5966897 intron Grip + chrX_7_5965001 chrX_5965001 RAL-303_100b 5169 chrX 5966807 5966830 chrX 5966884 5966937 27 101 10.0 13.5 11.8 2.1 130 chrX 5966807 intron Grip + chrX 5966872 intron Grip + chrX 5966937 intron Grip + chrX_27_5965001 chrX_5965001 RAL-303_100b 5170 chrX 5989332 5989339 chrX 5989434 5989440 6 100 36.5 17.5 27.0 0.2 108 chrX 5989332 5` UTR CG5966 + chrX 5989386 5` UTR CG5966 + chrX 5989440 5` UTR CG5966 + chrX_6_5985001 chrX_5985001 RAL-303_100b 5171 chrX 5989342 5989388 chrX 5989433 5989455 19 89 13.5 16.5 15.0 1.2 113 chrX 5989342 5` UTR CG5966 + chrX 5989398 5` UTR CG5966 + chrX 5989455 5` UTR CG5966 + chrX_19_5985001 chrX_5985001 RAL-303_100b 5172 chrX 6100471 6100528 chrX 6100619 6100671 38 146 10.5 15.5 13.0 2.7 200 chrX 6100471 intron Nep1 + chrX 6100571 intron Nep1 + chrX 6100671 intron Nep1 + chrX_38_6100001 chrX_6100001 RAL-303_100b 5173 chrX 6118671 6118730 chrX 6118778 6118837 53 104 10.5 12.5 11.5 4.2 166 chrX 6118671 intron Ca-alpha1T - chrX 6118754 intron Ca-alpha1T - chrX 6118837 intron Ca-alpha1T - chrX_53_6115001 chrX_6115001 RAL-303_100b 5174 chrX 6171564 6171581 chrX 6179022 6179039 Quasimodo 13 7457 26.0 13.5 19.8 0.6 7475 chrX 6171564 intron Ca-alpha1T - chrX 6175302 intron Ca-alpha1T - chrX 6179039 intron Ca-alpha1T - chrX_13_6175001 chrX_6175001 RAL-303_100b 5175 chrX 6171582 6171613 chrX 6179015 6179071 Quasimodo 18 7448 12.5 11.5 12.0 1.4 7489 chrX 6171582 intron Ca-alpha1T - chrX 6175326 intron Ca-alpha1T - chrX 6179071 intron Ca-alpha1T - chrX_18_6175001 chrX_6175001 RAL-303_100b 5176 chrX 6215323 6215372 chrX 6215431 6215480 45 107 1.5 20.5 11.0 3.8 157 chrX 6215323 intergenic not near genes chrX 6215402 intergenic not near genes chrX 6215480 intergenic not near genes chrX_45_6215001 chrX_6215001 RAL-303_100b 5177 chrX 4186821 4186822 chrX 6236738 6236738 4 2049917 61.0 67.5 64.2 0.1 2049917 chrX 4186821 intron Fas2 - chrX 5211780 intron,intron CG15465 +,rg + chrX 6236738 intergenic not near genes chrX_4_5210001 chrX_5210001 RAL-303_100b 5178 chrX 6263259 6263264 chrX 6263521 6263536 8 269 4.5 28.0 16.2 0.5 277 chrX 6263259 intron schlank - chrX 6263398 intron schlank - chrX 6263536 intron schlank - chrX_8_6260001 chrX_6260001 RAL-303_100b 5179 chrX 6315417 6315467 chrX 6315587 6315641 38 170 7.0 8.5 7.8 4.3 224 chrX 6315417 intron CG15894 + chrX 6315529 intron CG15894 + chrX 6315641 intron CG15894 + chrX_38_6315001 chrX_6315001 RAL-303_100b 5180 chrX 6335216 6335218 chrX 6337731 6337752 Tirant 4 2530 2.0 13.0 7.5 0.5 2536 chrX 6335216 intergenic not near genes chrX 6336484 intergenic not near genes chrX 6337752 intergenic CG3842 + chrX_4_6335001 chrX_6335001 RAL-303_100b 5181 chrX 6335220 6335244 chrX 6337724 6337779 Tirant 20 2530 0.5 9.5 5.0 3.3 2559 chrX 6335220 intergenic not near genes chrX 6336500 intergenic not near genes chrX 6337779 5` UTR CG3842 + chrX_20_6335001 chrX_6335001 RAL-303_100b 5182 chrX 6392860 6392897 chrX 6397637 6397687 Doc 34 4788 15.0 18.5 16.8 1.9 4827 chrX 6392860 intergenic not near genes chrX 6395274 intergenic not near genes chrX 6397687 intergenic not near genes chrX_34_6395001 chrX_6395001 RAL-303_100b 5183 chrX 6445327 6445334 chrX 6451101 6451117 297 7 5781 8.0 22.5 15.2 0.4 5790 chrX 6445327 intron CG42340 - chrX 6448222 intron CG42340 - chrX 6451117 intron CG42340 - chrX_7_6445001 chrX_6445001 RAL-303_100b 5184 chrX 6487956 6487968 chrX 6488063 6488075 11 106 32.0 29.0 30.5 0.3 119 chrX 6487956 intron CG42340 - chrX 6488016 intron CG42340 - chrX 6488075 intron CG42340 - chrX_11_6485001 chrX_6485001 RAL-303_100b 5185 chrX 6487970 6487982 chrX 6488062 6488089 13 105 21.5 28.0 24.8 0.5 119 chrX 6487970 intron CG42340 - chrX 6488030 intron CG42340 - chrX 6488089 intron CG42340 - chrX_13_6485001 chrX_6485001 RAL-303_100b 5186 chrX 6539889 6539949 chrX 6540016 6540030 43 123 9.0 13.5 11.2 3.5 141 chrX 6539889 intergenic not near genes chrX 6539960 intergenic not near genes chrX 6540030 intergenic not near genes chrX_43_6535001 chrX_6535001 RAL-303_100b 5187 chrX 6562797 6562815 chrX 6571303 6571322 Tirant 17 8507 28.0 16.0 22.0 0.7 8525 chrX 6562797 intron CG34417 + chrX 6567060 intron CG34417 + chrX 6571322 intron CG34417 + chrX_17_6565001 chrX_6565001 RAL-303_100b 5188 chrX 6562817 6562848 chrX 6571299 6571349 Tirant 29 8502 13.0 14.0 13.5 2.0 8532 chrX 6562817 intron CG34417 + chrX 6567083 intron CG34417 + chrX 6571349 intron CG34417 + chrX_29_6565001 chrX_6565001 RAL-303_100b 5189 chrX 6591829 6591870 chrX 6591939 6591980 19 110 15.5 0.0 7.8 2.2 151 chrX 6591829 intron Pat1 + chrX 6591904 intron Pat1 + chrX 6591980 intron Pat1 + chrX_19_6590001 chrX_6590001 RAL-303_100b 5190 chrX 6592039 6592090 chrX 6592260 6592310 43 220 4.5 12.0 8.2 4.7 271 chrX 6592039 intron Pat1 + chrX 6592174 intron Pat1 + chrX 6592310 intron Pat1 + chrX_43_6590001 chrX_6590001 RAL-303_100b 5191 chrX 6605477 6605499 chrX 6608525 6608547 Burdock 9 3048 3.0 14.5 8.8 0.9 3070 chrX 6605477 intron pigs + chrX 6607012 intron pigs + chrX 6608547 intron pigs + chrX_9_6605001 chrX_6605001 RAL-303_100b 5192 chrX 6618441 6618475 chrX 6618544 6618577 31 101 22.0 30.5 26.2 1.1 136 chrX 6618441 intron pigs + chrX 6618509 intron pigs + chrX 6618577 intron pigs + chrX_31_6615001 chrX_6615001 RAL-303_100b 5193 chrX 6629761 6629795 chrX 6629873 6629907 30 111 14.0 15.5 14.8 1.9 146 chrX 6629761 intron pigs + chrX 6629834 intron pigs + chrX 6629907 intron pigs + chrX_30_6625001 chrX_6625001 RAL-303_100b 5194 chrX 6681318 6681498 chrX 6683311 6683510 9 2007 65.5 42.5 54.0 0.2 2192 chrX 6681318 exon l(1)G0255 + chrX 6682414 exon CG4095 + chrX 6683510 exon CG4095 + chrX_9_6680001 chrX_6680001 RAL-303_100b 5195 chrX 6729610 6729664 chrX 6729966 6730020 19 355 29.0 35.5 32.2 0.6 410 chrX 6729610 intron CG3168 - chrX 6729815 intron CG3168 - chrX 6730020 intron CG3168 - chrX_19_6725001 chrX_6725001 RAL-303_100b 5196 chrX 6733419 6733673 chrX 6733530 6733783 19 106 30.5 27.0 28.8 0.6 364 chrX 6733419 intron,intron CG3168 -,CR43461 + chrX 6733601 intron,intron CG3168 -,CR43461 + chrX 6733783 intron,intron CG3168 -,CR43461 + chrX_19_6730001 chrX_6730001 RAL-303_100b 5197 chrX 6792057 6792090 chrX 6792173 6792206 16 115 11.5 10.0 10.8 1.4 149 chrX 6792057 intron C3G - chrX 6792132 intron C3G - chrX 6792206 intron C3G - chrX_16_6790001 chrX_6790001 RAL-303_100b 5198 chrX 6814257 6814286 chrX 6814364 6814389 11 107 7.5 3.5 5.5 1.7 132 chrX 6814257 intron iav + chrX 6814323 intron iav + chrX 6814389 intron iav + chrX_11_6810001 chrX_6810001 RAL-303_100b 5199 chrX 6865764 6865795 chrX 6865870 6865904 7 106 21.5 21.5 21.5 0.3 140 chrX 6865764 intron CG14434 - chrX 6865834 intron CG14434 - chrX 6865904 intron CG14434 - chrX_7_6865001 chrX_6865001 RAL-303_100b 5200 chrX 6896193 6896226 chrX 6896299 6896332 5 103 7.5 7.0 7.2 0.6 139 chrX 6896193 intergenic not near genes chrX 6896262 intergenic not near genes chrX 6896332 intergenic not near genes chrX_5_6895001 chrX_6895001 RAL-303_100b 5201 chrX 6897278 6897280 chrX 6897593 6897604 4 322 10.5 6.0 8.2 0.4 326 chrX 6897278 intergenic not near genes chrX 6897441 intergenic not near genes chrX 6897604 intergenic not near genes chrX_4_6895001 chrX_6895001 RAL-303_100b 5202 chrX 6897570 6897572 chrX 7243791 7243793 4 346221 6.0 25.5 15.8 0.2 346223 chrX 6897570 intergenic not near genes chrX 7070682 exon CG4607 + chrX 7243793 intron CR44357 - chrX_4_7070001 chrX_7070001 RAL-303_100b 5203 chrX 6897573 6897580 chrX 7243785 7243801 6 346217 6.0 21.5 13.8 0.4 346228 chrX 6897573 intergenic not near genes chrX 7070687 exon CG4607 + chrX 7243801 intron CR44357 - chrX_6_7070001 chrX_7070001 RAL-303_100b 5204 chrX 6897661 6897671 chrX 6897796 6897806 10 134 9.0 5.0 7.0 1.2 145 chrX 6897661 intergenic not near genes chrX 6897734 intergenic not near genes chrX 6897806 intergenic not near genes chrX_10_6895001 chrX_6895001 RAL-303_100b 5205 chrX 6897672 6897710 chrX 6897795 6897840 32 134 4.5 5.0 4.8 5.5 168 chrX 6897672 intergenic not near genes chrX 6897756 intergenic not near genes chrX 6897840 intergenic not near genes chrX_32_6895001 chrX_6895001 RAL-303_100b 5206 chrX 6901354 6901387 chrX 6901454 6901488 22 99 19.0 20.0 19.5 1.1 134 chrX 6901354 intergenic not near genes chrX 6901421 intergenic not near genes chrX 6901488 intergenic not near genes chrX_22_6900001 chrX_6900001 RAL-303_100b 5207 chrX 6950381 6950431 chrX 6950489 6950518 13 99 30.0 28.5 29.2 0.4 137 chrX 6950381 intron CG14431 + chrX 6950450 intron CG14431 + chrX 6950518 intron CG14431 + chrX_13_6950001 chrX_6950001 RAL-303_100b 5208 chrX 6989477 6989534 chrX 6989589 6989646 40 109 9.5 9.0 9.2 3.9 169 chrX 6989477 intron ogre - chrX 6989562 intron ogre - chrX 6989646 intron ogre - chrX_40_6985001 chrX_6985001 RAL-303_100b 5209 chrX 7023580 7023632 chrX 7030995 7031037 Tabor 36 7410 18.5 15.5 17.0 2.0 7457 chrX 7023580 intron CG12541 - chrX 7027308 intron CG12541 - chrX 7031037 intron CG12541 - chrX_36_7025001 chrX_7025001 RAL-303_100b 5210 chrX 7048627 7048660 chrX 7048704 7048747 15 96 36.0 35.0 35.5 0.4 120 chrX 7048627 intron CG12541 - chrX 7048687 intron CG12541 - chrX 7048747 intron CG12541 - chrX_15_7045001 chrX_7045001 RAL-303_100b 5211 chrX 7067907 7067929 chrX 13592492 13592493 4 6524576 23.0 29.0 26.0 0.1 6524586 chrX 7067907 intergenic not near genes chrX 10330200 3` UTR CG15306 - chrX 13592493 3` UTR Tango13 + chrX_4_10330001 chrX_10330001 RAL-303_100b 5212 chrX 7125220 7125278 chrX 7134404 7134462 roo 43 9182 2.0 10.5 6.2 6.0 9242 chrX 7125220 intergenic not near genes chrX 7129841 intergenic not near genes chrX 7134462 intergenic not near genes chrX_43_7125001 chrX_7125001 RAL-303_100b 5213 chrX 7235532 7235543 chrX 7235644 7235655 5 110 15.5 13.5 14.5 0.3 123 chrX 7235532 intron,intron CG9650 +,CR44357 - chrX 7235594 intron,intron CG9650 +,CR44357 - chrX 7235655 intron,intron CG9650 +,CR44357 - chrX_5_7235001 chrX_7235001 RAL-303_100b 5214 chrX 7293781 7293782 chrX 13057298 13057301 15 5763518 76.5 44.0 60.2 0.2 5763520 chrX 7293781 intron,intron CR44357 -,CG1677 - chrX 10175541 intron,intron CR44894 -,CG43902 + chrX 13057301 intron rad + chrX_15_10175001 chrX_10175001 RAL-303_100b 5215 chrX 7294488 7294543 chrX 7294611 7294651 38 116 16.0 14.0 15.0 2.4 163 chrX 7294488 intron,intron CR44357 -,CG1677 - chrX 7294570 intron,intron CR44357 -,CG1677 - chrX 7294651 intron,intron CR44357 -,CG1677 - chrX_38_7290001 chrX_7290001 RAL-303_100b 5216 chrX 7345173 7345215 chrX 7345290 7345332 37 115 13.5 8.0 10.8 3.1 159 chrX 7345173 intron,intron CR44357 -,CG1677 - chrX 7345252 intron,intron CR44357 -,CG1677 - chrX 7345332 intron,intron CR44357 -,CG1677 - chrX_37_7345001 chrX_7345001 RAL-303_100b 5217 chrX 7357248 7357253 chrX 7357348 7357354 4 100 23.5 19.0 21.2 0.2 106 chrX 7357248 intron,intron CR44357 -,CG1677 - chrX 7357301 intron,intron CR44357 -,CG1677 - chrX 7357354 intron,intron CR44357 -,CG1677 - chrX_4_7355001 chrX_7355001 RAL-303_100b 5218 chrX 7357256 7357269 chrX 7357347 7357370 11 99 21.0 18.5 19.8 0.5 114 chrX 7357256 intron,intron CR44357 -,CG1677 - chrX 7357313 intron,intron CR44357 -,CG1677 - chrX 7357370 intron,intron CR44357 -,CG1677 - chrX_11_7355001 chrX_7355001 RAL-303_100b 5219 chrX 7401687 7401745 chrX 7401788 7401846 37 99 13.5 14.5 14.0 2.5 159 chrX 7401687 intron,intron CR44357 -,CG1677 - chrX 7401766 intron,intron,3` UTR CR44357 -,CG1677 -,CG15035 - chrX 7401846 intron,intron,3` UTR CR44357 -,CG1677 -,CG15035 - chrX_37_7400001 chrX_7400001 RAL-303_100b 5220 chrX 7447187 7447189 chrX 7447295 7447297 4 108 15.0 37.0 26.0 0.1 110 chrX 7447187 5` UTR CR45533 + chrX 7447242 5` UTR CR45533 + chrX 7447297 5` UTR CR45533 + chrX_4_7445001 chrX_7445001 RAL-303_100b 5221 chrX 7447190 7447194 chrX 7447258 7447302 11 103 14.0 20.5 17.2 0.6 112 chrX 7447190 5` UTR CR45533 + chrX 7447246 5` UTR CR45533 + chrX 7447302 5` UTR CR45533 + chrX_11_7445001 chrX_7445001 RAL-303_100b 5222 chrX 7470208 7470222 chrX 7470320 7470333 14 112 9.5 15.0 12.2 1.1 125 chrX 7470208 intergenic not near genes chrX 7470270 intergenic not near genes chrX 7470333 intergenic not near genes chrX_14_7470001 chrX_7470001 RAL-303_100b 5223 chrX 7582311 7582315 chrX 7582413 7582416 4 102 38.0 21.0 29.5 0.1 105 chrX 7582311 intergenic not near genes chrX 7582364 intergenic not near genes chrX 7582416 intergenic not near genes chrX_4_7580001 chrX_7580001 RAL-303_100b 5224 chrX 7582316 7582344 chrX 7582412 7582446 14 98 23.5 21.5 22.5 0.6 130 chrX 7582316 intergenic not near genes chrX 7582381 intergenic not near genes chrX 7582446 intergenic not near genes chrX_14_7580001 chrX_7580001 RAL-303_100b 5225 chrX 7679911 7680130 chrX 7680189 7680217 53 147 14.5 36.5 25.5 2.0 306 chrX 7679911 intergenic CR45666 -,CR45667 - chrX 7680064 3` UTR CR45666 - chrX 7680217 3` UTR CR45666 - chrX_53_7680001 chrX_7680001 RAL-303_100b 5226 chrX 7679851 7679903 chrX 7680444 7680497 47 595 53.0 113.0 83.0 0.6 646 chrX 7679851 intergenic CR45666 -,CR45667 - chrX 7680174 3` UTR CR45666 - chrX 7680497 3` UTR CR45666 - chrX_47_7680001 chrX_7680001 RAL-303_100b 5227 chrX 7702508 7702510 chrX 7702625 7702627 4 117 0.0 37.0 18.5 0.2 119 chrX 7702508 intron CHES-1-like - chrX 7702568 intron CHES-1-like - chrX 7702627 intron CHES-1-like - chrX_4_7700001 chrX_7700001 RAL-303_100b 5228 chrX 7702511 7702524 chrX 7702617 7702641 9 115 0.0 29.0 14.5 0.6 130 chrX 7702511 intron CHES-1-like - chrX 7702576 intron CHES-1-like - chrX 7702641 intron CHES-1-like - chrX_9_7700001 chrX_7700001 RAL-303_100b 5229 chrX 7702881 7702896 chrX 7703345 7703360 jockey 16 464 33.0 14.0 23.5 0.7 479 chrX 7702881 intron CHES-1-like - chrX 7703120 intron CHES-1-like - chrX 7703360 intron CHES-1-like - chrX_16_7700001 chrX_7700001 RAL-303_100b 5230 chrX 7702901 7702918 chrX 7703344 7703382 jockey 18 463 24.0 13.5 18.8 0.9 481 chrX 7702901 intron CHES-1-like - chrX 7703142 intron CHES-1-like - chrX 7703382 intron CHES-1-like - chrX_18_7700001 chrX_7700001 RAL-303_100b 5231 chrX 7720532 7720543 chrX 7720639 7720650 7 105 20.5 4.5 12.5 0.5 118 chrX 7720532 intergenic not near genes chrX 7720591 intergenic not near genes chrX 7720650 intergenic not near genes chrX_7_7720001 chrX_7720001 RAL-303_100b 5232 chrX 7720545 7720583 chrX 7720637 7720681 24 102 7.5 4.5 6.0 3.4 136 chrX 7720545 intergenic not near genes chrX 7720613 intergenic not near genes chrX 7720681 intergenic not near genes chrX_24_7720001 chrX_7720001 RAL-303_100b 5233 chrX 7737105 7737113 chrX 7737242 7737250 9 137 20.5 6.5 13.5 0.6 145 chrX 7737105 5` UTR Tom40 + chrX 7737178 intron Tom40 + chrX 7737250 intron Tom40 + chrX_9_7735001 chrX_7735001 RAL-303_100b 5234 chrX 7737118 7737126 chrX 7737241 7737263 5 133 14.5 6.0 10.2 0.4 145 chrX 7737118 5` UTR Tom40 + chrX 7737190 intron Tom40 + chrX 7737263 intron Tom40 + chrX_5_7735001 chrX_7735001 RAL-303_100b 5235 chrX 7832414 7832434 chrX 7832528 7832548 19 112 16.5 15.5 16.0 1.1 134 chrX 7832414 intron CG1402 + chrX 7832481 intron CG1402 + chrX 7832548 intron CG1402 + chrX_19_7830001 chrX_7830001 RAL-303_100b 5236 chrX 7832436 7832465 chrX 7832524 7832579 17 112 9.5 14.0 11.8 1.3 143 chrX 7832436 intron CG1402 + chrX 7832508 intron CG1402 + chrX 7832579 intron CG1402 + chrX_17_7830001 chrX_7830001 RAL-303_100b 5237 chrX 7845698 7845759 chrX 7847214 7847259 hopper2 46 1514 11.5 11.5 11.5 3.7 1561 chrX 7845698 intergenic not near genes chrX 7846478 intergenic not near genes chrX 7847259 intergenic not near genes chrX_46_7845001 chrX_7845001 RAL-303_100b 5238 chrX 7858757 7858800 chrX 7858858 7858896 30 100 12.0 0.0 6.0 4.3 139 chrX 7858757 3` UTR CG1409 + chrX 7858826 intergenic CG1409 + chrX 7858896 intergenic CG1409 + chrX_30_7855001 chrX_7855001 RAL-303_100b 5239 chrX 7960854 7960908 chrX 7960966 7961022 54 113 14.5 14.5 14.5 3.5 168 chrX 7960854 intron,5` UTR sws -,CR45620 + chrX 7960938 intron sws - chrX 7961022 intron sws - chrX_54_7960001 chrX_7960001 RAL-303_100b 5240 chrX 7968519 7968525 chrX 7968661 7968679 6 151 0.0 23.5 11.8 0.5 160 chrX 7968519 intron sn + chrX 7968599 intron sn + chrX 7968679 intron sn + chrX_6_7965001 chrX_7965001 RAL-303_100b 5241 chrX 8024654 8024672 chrX 8024723 8024768 4 77 22.0 7.5 14.8 0.3 114 chrX 8024654 intron Tbh + chrX 8024711 intron Tbh + chrX 8024768 intron Tbh + chrX_4_8020001 chrX_8020001 RAL-303_100b 5242 chrX 8092264 8092323 chrX 8092374 8092384 42 106 9.5 8.5 9.0 4.2 120 chrX 8092264 intron Ubc-E2H - chrX 8092324 intron Ubc-E2H - chrX 8092384 intron Ubc-E2H - chrX_42_8090001 chrX_8090001 RAL-303_100b 5243 chrX 8330400 8330435 chrX 8330507 8330542 11 105 9.5 10.0 9.8 1.0 142 chrX 8330400 intron nAChRalpha3 - chrX 8330471 intron nAChRalpha3 - chrX 8330542 intron nAChRalpha3 - chrX_11_8330001 chrX_8330001 RAL-303_100b 5244 chrX 8364809 8364867 chrX 8365238 8365274 BS 41 427 9.0 10.5 9.8 3.8 465 chrX 8364809 intron nAChRalpha3 - chrX 8365042 intron nAChRalpha3 - chrX 8365274 intron nAChRalpha3 - chrX_41_8365001 chrX_8365001 RAL-303_100b 5245 chrX 8371133 8371180 chrX 8371315 8371359 14 175 10.0 2.5 6.2 1.9 226 chrX 8371133 intergenic not near genes chrX 8371246 intergenic not near genes chrX 8371359 intergenic not near genes chrX_14_8370001 chrX_8370001 RAL-303_100b 5246 chrX 8371692 8371748 chrX 8371805 8371861 33 109 9.0 8.0 8.5 3.5 169 chrX 8371692 intergenic not near genes chrX 8371776 intergenic not near genes chrX 8371861 intergenic not near genes chrX_33_8370001 chrX_8370001 RAL-303_100b 5247 chrX 8377891 8377898 chrX 8377993 8378000 7 102 16.0 9.5 12.8 0.5 109 chrX 8377891 intergenic not near genes chrX 8377946 intergenic not near genes chrX 8378000 intergenic not near genes chrX_7_8375001 chrX_8375001 RAL-303_100b 5248 chrX 8397280 8397302 chrX 8397381 8397403 14 100 10.5 0.0 5.2 2.3 123 chrX 8397280 3` UTR CG15345 - chrX 8397342 3` UTR CG15345 - chrX 8397403 3` UTR CG15345 - chrX_14_8395001 chrX_8395001 RAL-303_100b 5249 chrX 8506005 8506057 chrX 8506108 8506160 40 101 9.0 13.0 11.0 3.3 155 chrX 8506005 intron CG33181 + chrX 8506082 intron CG33181 + chrX 8506160 intron CG33181 + chrX_40_8505001 chrX_8505001 RAL-303_100b 5250 chrX 8506503 8506560 chrX 8506736 8506793 36 232 6.0 8.0 7.0 4.5 290 chrX 8506503 intron CG33181 + chrX 8506648 intron CG33181 + chrX 8506793 intron CG33181 + chrX_36_8505001 chrX_8505001 RAL-303_100b 5251 chrX 8509094 8509151 chrX 8509196 8509253 17 101 6.0 7.5 6.8 2.2 159 chrX 8509094 intron CG33181 + chrX 8509174 intron CG33181 + chrX 8509253 intron CG33181 + chrX_17_8505001 chrX_8505001 RAL-303_100b 5252 chrX 8544122 8544163 chrX 8544226 8544267 17 103 8.0 5.0 6.5 2.3 145 chrX 8544122 intron Nrg + chrX 8544194 intron Nrg + chrX 8544267 intron Nrg + chrX_17_8540001 chrX_8540001 RAL-303_100b 5253 chrX 8658675 8658705 chrX 8658795 8658810 8 115 35.0 30.0 32.5 0.2 135 chrX 8658675 intergenic not near genes chrX 8658742 intergenic not near genes chrX 8658810 intergenic not near genes chrX_8_8655001 chrX_8655001 RAL-303_100b 5254 chrX 3291959 3291984 chrX 8759616 8759616 5 5467642 36.5 39.0 37.8 0.1 5467657 chrX 3291959 intron dnc + chrX 6025788 intergenic not near genes chrX 8759616 intron Lim1 - chrX_5_6025001 chrX_6025001 RAL-303_100b 5255 chrX 8772224 8772250 chrX 8772328 8772354 13 101 35.5 35.0 35.2 0.4 130 chrX 8772224 intron Lim1 - chrX 8772289 intron Lim1 - chrX 8772354 intron Lim1 - chrX_13_8770001 chrX_8770001 RAL-303_100b 5256 chrX 8787465 8787495 chrX 8787582 8787617 10 119 35.5 28.0 31.8 0.3 152 chrX 8787465 intron Lim1 - chrX 8787541 intron Lim1 - chrX 8787617 exon Lim1 - chrX_10_8785001 chrX_8785001 RAL-303_100b 5257 chrX 8834811 8834867 chrX 8834914 8834971 25 103 38.0 33.5 35.8 0.7 160 chrX 8834811 intergenic CR45537 + chrX 8834891 intergenic CR45537 + chrX 8834971 intergenic CR45537 + chrX_25_8830001 chrX_8830001 RAL-303_100b 5258 chrX 8849316 8849327 chrX 12623071 12623071 4 3773750 30.0 51.0 40.5 0.1 3773755 chrX 8849316 intron CG12075 + chrX 10736194 intron CG32676 - chrX 12623071 intergenic CR44568 + chrX_4_10735001 chrX_10735001 RAL-303_100b 5259 chrX 8894976 8894980 chrX 8895087 8895091 5 111 26.5 11.0 18.8 0.3 115 chrX 8894976 intron Moe - chrX 8895034 intron Moe - chrX 8895091 intron Moe - chrX_5_8895001 chrX_8895001 RAL-303_100b 5260 chrX 8894982 8895002 chrX 8895083 8895108 22 109 17.5 8.0 12.8 1.6 126 chrX 8894982 intron Moe - chrX 8895045 intron Moe - chrX 8895108 intron Moe - chrX_22_8895001 chrX_8895001 RAL-303_100b 5261 chrX 8913497 8913544 chrX 8913631 8913676 19 130 8.0 17.5 12.8 1.4 179 chrX 8913497 intron rdgA + chrX 8913586 intron rdgA + chrX 8913676 intron rdgA + chrX_19_8910001 chrX_8910001 RAL-303_100b 5262 chrX 8922306 8922312 chrX 8922765 8922771 jockey 4 459 37.5 16.0 26.8 0.1 465 chrX 8922306 intron rdgA + chrX 8922538 intron rdgA + chrX 8922771 intron rdgA + chrX_4_8920001 chrX_8920001 RAL-303_100b 5263 chrX 8922315 8922331 chrX 8922763 8922780 jockey 14 456 28.0 13.5 20.8 0.6 465 chrX 8922315 intron rdgA + chrX 8922548 intron rdgA + chrX 8922780 intron rdgA + chrX_14_8920001 chrX_8920001 RAL-303_100b 5264 chrX 8922334 8922360 chrX 8922758 8922819 jockey 19 448 12.5 12.0 12.2 1.4 485 chrX 8922334 intron rdgA + chrX 8922576 intron rdgA + chrX 8922819 intron rdgA + chrX_19_8920001 chrX_8920001 RAL-303_100b 5265 chrX 8927563 8927613 chrX 8929858 8929900 NOF 51 2293 15.0 16.5 15.8 3.0 2337 chrX 8927563 intron rdgA + chrX 8928732 intron rdgA + chrX 8929900 intron rdgA + chrX_51_8925001 chrX_8925001 RAL-303_100b 5266 chrX 8934583 8934601 chrX 8934684 8934702 6 101 11.0 10.0 10.5 0.5 119 chrX 8934583 intron rdgA + chrX 8934642 intron rdgA + chrX 8934702 intron rdgA + chrX_6_8930001 chrX_8930001 RAL-303_100b 5267 chrX 8948731 8948790 chrX 8956266 8956319 roo 34 7533 4.5 8.5 6.5 4.5 7588 chrX 8948731 intron rdgA + chrX 8952525 intron rdgA + chrX 8956319 intron rdgA + chrX_34_8950001 chrX_8950001 RAL-303_100b 5268 chrX 8968842 8968858 chrX 8968944 8968950 5 100 28.5 29.5 29.0 0.2 108 chrX 8968842 intron rdgA + chrX 8968896 intron rdgA + chrX 8968950 intron rdgA + chrX_5_8965001 chrX_8965001 RAL-303_100b 5269 chrX 8971869 8971913 chrX 8971961 8971987 28 99 14.0 8.5 11.2 2.3 118 chrX 8971869 intron rdgA + chrX 8971928 intron rdgA + chrX 8971987 intron rdgA + chrX_28_8970001 chrX_8970001 RAL-303_100b 5270 chrX 9062702 9062754 chrX 9062805 9062857 16 102 6.0 0.0 3.0 4.0 155 chrX 9062702 intron CG15365 - chrX 9062780 intron CG15365 - chrX 9062857 intron CG15365 - chrX_16_9060001 chrX_9060001 RAL-303_100b 5271 chrX 9218058 9218072 chrX 9218174 9218188 11 115 20.0 18.5 19.2 0.5 130 chrX 9218058 3` UTR t - chrX 9218123 3` UTR t - chrX 9218188 3` UTR t - chrX_11_9215001 chrX_9215001 RAL-303_100b 5272 chrX 9218073 9218076 chrX 9218172 9218192 7 113 18.0 18.0 18.0 0.4 119 chrX 9218073 3` UTR t - chrX 9218132 3` UTR t - chrX 9218192 3` UTR t - chrX_7_9215001 chrX_9215001 RAL-303_100b 5273 chrX 9337915 9337973 chrX 9338032 9338085 51 115 11.0 16.0 13.5 3.5 170 chrX 9337915 intron CG34449 - chrX 9338000 intron CG34449 - chrX 9338085 exon CG34449 - chrX_51_9335001 chrX_9335001 RAL-303_100b 5274 chrX 9508115 9508161 chrX 9509658 9509704 jockey 17 1539 16.5 16.5 16.5 1.0 1589 chrX 9508115 intron CG32700 - chrX 9508910 intron CG32700 - chrX 9509704 intron CG32700 - chrX_17_9505001 chrX_9505001 RAL-303_100b 5275 chrX 9529213 9529265 chrX 9529371 9529423 40 157 12.0 10.5 11.2 3.3 210 chrX 9529213 intron CG32700 - chrX 9529318 intron CG32700 - chrX 9529423 intron CG32700 - chrX_40_9525001 chrX_9525001 RAL-303_100b 5276 chrX 9530386 9530388 chrX 9530514 9530516 5 128 8.0 13.5 10.8 0.4 130 chrX 9530386 intron CG32700 - chrX 9530451 intron CG32700 - chrX 9530516 intron CG32700 - chrX_5_9530001 chrX_9530001 RAL-303_100b 5277 chrX 9530390 9530398 chrX 9530511 9530526 7 126 8.0 13.0 10.5 0.6 136 chrX 9530390 intron CG32700 - chrX 9530458 intron CG32700 - chrX 9530526 intron CG32700 - chrX_7_9530001 chrX_9530001 RAL-303_100b 5278 chrX 9530402 9530414 chrX 9530510 9530522 15 120 5.5 12.0 8.8 1.5 120 chrX 9530402 intron CG32700 - chrX 9530462 intron CG32700 - chrX 9530522 intron CG32700 - chrX_15_9530001 chrX_9530001 RAL-303_100b 5279 chrX 9575767 9575775 chrX 9576116 9576124 mdg3 5 349 46.0 14.0 30.0 0.2 357 chrX 9575767 intron,exon CG32699 -,CG42395 - chrX 9575946 intron,intron CG32699 -,CG42395 - chrX 9576124 intron,exon CG32699 -,CG42395 - chrX_5_9575001 chrX_9575001 RAL-303_100b 5280 chrX 9575776 9575822 chrX 9576114 9576166 mdg3 39 345 21.0 12.5 16.8 2.2 390 chrX 9575776 intron,exon CG32699 -,CG42395 - chrX 9575971 intron,intron CG32699 -,CG42395 - chrX 9576166 intron,5` UTR CG32699 -,CG42395 - chrX_39_9575001 chrX_9575001 RAL-303_100b 5281 chrX 9732379 9732382 chrX 9732481 9732489 6 106 2.0 14.5 8.2 0.7 110 chrX 9732379 intron Sp1 + chrX 9732434 intron Sp1 + chrX 9732489 intron Sp1 + chrX_6_9730001 chrX_9730001 RAL-303_100b 5282 chrX 9758022 9758079 chrX 9758132 9758178 27 109 6.5 0.0 3.2 6.4 156 chrX 9758022 intergenic not near genes chrX 9758100 intergenic not near genes chrX 9758178 intergenic not near genes chrX_27_9755001 chrX_9755001 RAL-303_100b 5283 chrX 9791849 9791878 chrX 9791965 9792000 17 119 17.0 15.5 16.2 1.0 151 chrX 9791849 intron CG32698 + chrX 9791924 intron CG32698 + chrX 9792000 intron CG32698 + chrX_17_9790001 chrX_9790001 RAL-303_100b 5284 chrX 9791879 9791895 chrX 9791959 9792017 17 117 10.0 12.0 11.0 1.4 138 chrX 9791879 intron CG32698 + chrX 9791948 intron CG32698 + chrX 9792017 intron CG32698 + chrX_17_9790001 chrX_9790001 RAL-303_100b 5285 chrX 9839317 9839374 chrX 9839420 9839441 13 103 0.0 15.5 7.8 1.5 124 chrX 9839317 intron CG32698 + chrX 9839379 intron CG32698 + chrX 9839441 intron CG32698 + chrX_13_9835001 chrX_9835001 RAL-303_100b 5286 chrX 9845361 9845361 chrX 14544906 14544906 5 4699545 65.5 58.0 61.8 0.1 4699545 chrX 9845361 intron CG32698 + chrX 12195134 intron Ten-a + chrX 14544906 intergenic not near genes chrX_5_12195001 chrX_12195001 RAL-303_100b 5287 chrX 9847469 9847526 chrX 9847584 9847635 43 111 10.0 13.5 11.8 3.4 166 chrX 9847469 intron CG32698 + chrX 9847552 intron CG32698 + chrX 9847635 intron CG32698 + chrX_43_9845001 chrX_9845001 RAL-303_100b 5288 chrX 10138192 10138248 chrX 10145721 10145777 412 50 7528 7.5 12.5 10.0 4.5 7585 chrX 10138192 intron,intron RhoU +,CR44894 - chrX 10141984 intron,intron RhoU +,CR44894 - chrX 10145777 intron,intron RhoU +,CR44894 - chrX_50_10140001 chrX_10140001 RAL-303_100b 5289 chrX 10151905 10151935 chrX 10152001 10152037 25 98 14.5 16.0 15.2 1.5 132 chrX 10151905 intron CR44894 - chrX 10151971 intron CR44894 - chrX 10152037 intron CR44894 - chrX_25_10150001 chrX_10150001 RAL-303_100b 5290 chrX 10154259 10154313 chrX 10154360 10154400 39 98 12.5 7.5 10.0 3.5 141 chrX 10154259 intron,intron CR44894 -,CG12645 + chrX 10154330 intron,intron CR44894 -,CG12645 + chrX 10154400 intron,exon CR44894 -,CG12645 + chrX_39_10150001 chrX_10150001 RAL-303_100b 5291 chrX 10216823 10216840 chrX 10216929 10216946 7 104 34.5 25.5 30.0 0.2 123 chrX 10216823 3` UTR l(1)G0230 + chrX 10216884 3` UTR l(1)G0230 + chrX 10216946 3` UTR l(1)G0230 + chrX_7_10215001 chrX_10215001 RAL-303_100b 5292 chrX 10216847 10216850 chrX 10216926 10216956 6 96 28.0 22.5 25.2 0.2 109 chrX 10216847 3` UTR l(1)G0230 + chrX 10216902 3` UTR l(1)G0230 + chrX 10216956 3` UTR l(1)G0230 + chrX_6_10215001 chrX_10215001 RAL-303_100b 5293 chrX 10267295 10267319 chrX 10276461 10276494 roo 17 9173 4.5 7.5 6.0 2.4 9199 chrX 10267295 3` UTR alpha-Man-I - chrX 10271894 intron alpha-Man-I - chrX 10276494 3` UTR alpha-Man-I - chrX_17_10270001 chrX_10270001 RAL-303_100b 5294 chrX 10317532 10317566 chrX 10317635 10317669 19 103 0.5 8.0 4.2 3.7 137 chrX 10317532 intron alpha-Man-I - chrX 10317600 intron alpha-Man-I - chrX 10317669 intron alpha-Man-I - chrX_19_10315001 chrX_10315001 RAL-303_100b 5295 chrX 10317567 10317580 chrX 10317634 10317683 8 98 0.5 8.0 4.2 1.5 116 chrX 10317567 intron alpha-Man-I - chrX 10317625 intron alpha-Man-I - chrX 10317683 intron alpha-Man-I - chrX_8_10315001 chrX_10315001 RAL-303_100b 5296 chrX 10330667 10330673 chrX 10330857 10330877 6 207 43.5 39.0 41.2 0.1 210 chrX 10330667 exon CG15306 - chrX 10330772 exon CG15306 - chrX 10330877 exon CG15306 - chrX_6_10330001 chrX_10330001 RAL-303_100b 5297 chrX 10348776 10348823 chrX 10356366 10356413 springer 27 7584 13.0 21.5 17.2 1.5 7637 chrX 10348776 intergenic snoRNA:U3:9B + chrX 10352594 intergenic not near genes chrX 10356413 intergenic l(1)G0289 - chrX_27_10350001 chrX_10350001 RAL-303_100b 5298 chrX 10431311 10431366 chrX 10431416 10431471 37 103 9.0 9.0 9.0 3.7 160 chrX 10431311 intron CG32683 - chrX 10431391 intron CG32683 - chrX 10431471 intron CG32683 - chrX_37_10430001 chrX_10430001 RAL-303_100b 5299 chrX 10451060 10451116 chrX 10451168 10451224 23 106 6.5 10.5 8.5 2.4 164 chrX 10451060 intron CG32683 - chrX 10451142 intron CG32683 - chrX 10451224 intron CG32683 - chrX_23_10450001 chrX_10450001 RAL-303_100b 5300 chrX 10550307 10550367 chrX 10550410 10550470 38 102 11.0 13.0 12.0 2.9 163 chrX 10550307 intron spri - chrX 10550388 intron spri - chrX 10550470 intron spri - chrX_38_10550001 chrX_10550001 RAL-303_100b 5301 chrX 10550832 10550883 chrX 10552324 10552375 hobo 41 1490 14.5 14.5 14.5 2.6 1543 chrX 10550832 intron spri - chrX 10551604 intron spri - chrX 10552375 intron spri - chrX_41_10550001 chrX_10550001 RAL-303_100b 5302 chrX 10686028 10686084 chrX 10691190 10691229 roo 33 5161 11.5 12.5 12.0 2.5 5201 chrX 10686028 intron X11Lbeta + chrX 10688628 intron X11Lbeta + chrX 10691229 intron X11Lbeta + chrX_33_10685001 chrX_10685001 RAL-303_100b 5303 chrX 10710126 10710183 chrX 10710432 10710489 36 299 6.5 8.0 7.2 4.4 363 chrX 10710126 3` UTR X11Lbeta + chrX 10710308 3` UTR X11Lbeta + chrX 10710489 3` UTR X11Lbeta + chrX_36_10710001 chrX_10710001 RAL-303_100b 5304 chrX 10772649 10772698 chrX 10772757 10772802 Tirant 28 104 16.0 4.5 10.2 2.5 153 chrX 10772649 intron CG15211 + chrX 10772726 intron CG15211 + chrX 10772802 intron CG15211 + chrX_28_10770001 chrX_10770001 RAL-303_100b 5305 chrX 10803011 10803049 chrX 10803121 10803159 32 107 23.0 21.5 22.2 1.4 148 chrX 10803011 intron Imp - chrX 10803085 intron Imp - chrX 10803159 intron Imp - chrX_32_10800001 chrX_10800001 RAL-303_100b 5306 chrX 10911945 10911999 chrX 10912075 10912129 46 127 8.5 15.0 11.8 3.6 184 chrX 10911945 intron CG43901 + chrX 10912037 intron CG43901 + chrX 10912129 intron CG43901 + chrX_46_10910001 chrX_10910001 RAL-303_100b 5307 chrX 11095975 11096021 chrX 11103102 11103148 HMS-Beagle 18 7125 8.0 15.5 11.8 1.4 7173 chrX 11095975 intergenic not near genes chrX 11099562 intergenic not near genes chrX 11103148 intron CG42249 + chrX_18_11095001 chrX_11095001 RAL-303_100b 5308 chrX 11109417 11109417 chrX 12946233 12946235 4 1836817 19.0 55.5 37.2 0.1 1836818 chrX 11109417 intron Hsp60 + chrX 12027826 exon Usp7 - chrX 12946235 3` UTR fne + chrX_4_12025001 chrX_12025001 RAL-303_100b 5309 chrX 11141993 11142092 chrX 11142092 11142193 15 101 0.0 0.0 0.0 15.0 200 chrX 11141993 intergenic CG15199 - chrX 11142093 intergenic CG15199 -,CG15202 + chrX 11142193 intergenic CG15202 +,CG15199 - chrX_15_11140001 chrX_11140001 RAL-303_100b 5310 chrX 11165885 11165900 chrX 11166240 11166257 18 357 7.0 22.0 14.5 1.2 372 chrX 11165885 intergenic not near genes chrX 11166071 intergenic not near genes chrX 11166257 intergenic not near genes chrX_18_11165001 chrX_11165001 RAL-303_100b 5311 chrX 11184230 11184281 chrX 11189331 11189376 flea 22 5100 17.5 13.5 15.5 1.3 5146 chrX 11184230 intergenic not near genes chrX 11186803 intergenic not near genes chrX 11189376 intergenic not near genes chrX_22_11185001 chrX_11185001 RAL-303_100b 5312 chrX 11194451 11194458 chrX 11201887 11201904 gypsy5 9 7444 14.5 28.0 21.2 0.4 7453 chrX 11194451 intergenic not near genes chrX 11198178 intergenic not near genes chrX 11201904 intergenic CG11106 + chrX_9_11195001 chrX_11195001 RAL-303_100b 5313 chrX 11205281 11205323 chrX 11205368 11205424 36 100 8.5 9.5 9.0 3.6 143 chrX 11205281 intergenic not near genes chrX 11205352 intergenic not near genes chrX 11205424 intergenic not near genes chrX_36_11205001 chrX_11205001 RAL-303_100b 5314 chrX 11254142 11254197 chrX 11254278 11254333 45 135 13.5 15.5 14.5 2.9 191 chrX 11254142 intron CG44422 - chrX 11254238 intron CG44422 - chrX 11254333 intron CG44422 - chrX_45_11250001 chrX_11250001 RAL-303_100b 5315 chrX 11291665 11291715 chrX 11291772 11291822 27 100 15.0 15.0 15.0 1.7 157 chrX 11291665 intron CG44422 - chrX 11291744 intron CG44422 - chrX 11291822 intron CG44422 - chrX_27_11290001 chrX_11290001 RAL-303_100b 5316 chrX 11291717 11291720 chrX 11291769 11291824 6 97 13.0 14.5 13.8 0.4 107 chrX 11291717 intron CG44422 - chrX 11291770 intron CG44422 - chrX 11291824 intron CG44422 - chrX_6_11290001 chrX_11290001 RAL-303_100b 5317 chrX 11312046 11312056 chrX 11319413 11319434 Stalker2 8 7373 26.5 14.5 20.5 0.4 7388 chrX 11312046 intergenic not near genes chrX 11315740 intergenic not near genes chrX 11319434 intergenic not near genes chrX_8_11315001 chrX_11315001 RAL-303_100b 5318 chrX 11312058 11312091 chrX 11319409 11319453 Stalker2 26 7367 7.5 12.5 10.0 2.4 7395 chrX 11312058 intergenic not near genes chrX 11315756 intergenic not near genes chrX 11319453 intergenic not near genes chrX_26_11315001 chrX_11315001 RAL-303_100b 5319 chrX 11499095 11499124 chrX 11499192 11499227 17 101 17.5 19.0 18.2 0.9 132 chrX 11499095 intron Drak + chrX 11499161 intron Drak + chrX 11499227 intron Drak + chrX_17_11495001 chrX_11495001 RAL-303_100b 5320 chrX 11499126 11499138 chrX 11499191 11499241 14 93 14.0 18.5 16.2 0.8 115 chrX 11499126 intron Drak + chrX 11499184 intron Drak + chrX 11499241 intron Drak + chrX_14_11495001 chrX_11495001 RAL-303_100b 5321 chrX 11535019 11535046 chrX 11541514 11541537 Burdock 22 6495 23.5 12.0 17.8 1.2 6518 chrX 11535019 intron Drak + chrX 11538278 intron Drak + chrX 11541537 intron Drak + chrX_22_11535001 chrX_11535001 RAL-303_100b 5322 chrX 11544220 11544267 chrX 11544353 11544375 53 126 9.0 10.0 9.5 5.0 155 chrX 11544220 intron Drak + chrX 11544298 intron Drak + chrX 11544375 intron Drak + chrX_53_11540001 chrX_11540001 RAL-303_100b 5323 chrX 11571436 11571482 chrX 11571698 11571745 pogo 23 259 37.5 36.5 37.0 0.6 309 chrX 11571436 3` UTR Kmn1 - chrX 11571590 3` UTR Kmn1 - chrX 11571745 3` UTR Kmn1 - chrX_23_11570001 chrX_11570001 RAL-303_100b 5324 chrX 11633390 11633445 chrX 11640469 11640524 297 38 7079 15.0 14.5 14.8 2.4 7134 chrX 11633390 intron Ptp10D + chrX 11636957 intron Ptp10D + chrX 11640524 intron Ptp10D + chrX_38_11635001 chrX_11635001 RAL-303_100b 5325 chrX 11645088 11645135 chrX 11648283 11648330 NOF 26 3193 9.5 7.0 8.2 2.8 3242 chrX 11645088 intron Ptp10D + chrX 11646709 intron Ptp10D + chrX 11648330 intron Ptp10D + chrX_26_11645001 chrX_11645001 RAL-303_100b 5326 chrX 11685743 11685771 chrX 11685866 11685894 17 119 29.5 20.5 25.0 0.7 151 chrX 11685743 intron bif + chrX 11685818 intron bif + chrX 11685894 intron bif + chrX_17_11685001 chrX_11685001 RAL-303_100b 5327 chrX 11719853 11719901 chrX 11719953 11720006 20 103 11.5 15.0 13.2 1.4 153 chrX 11719853 3` UTR prtp + chrX 11719930 intergenic prtp +,Tango10 + chrX 11720006 intergenic prtp +,Tango10 + chrX_20_11715001 chrX_11715001 RAL-303_100b 5328 chrX 11761981 11762006 chrX 11762085 11762090 15 100 11.0 16.0 13.5 1.0 109 chrX 11761981 intron m + chrX 11762036 intron m + chrX 11762090 intron m + chrX_15_11760001 chrX_11760001 RAL-303_100b 5329 chrX 11798991 11799038 chrX 11799102 11799143 24 110 9.5 9.0 9.2 2.4 152 chrX 11798991 intron CkIIbeta + chrX 11799067 intron CkIIbeta + chrX 11799143 intron CkIIbeta + chrX_24_11795001 chrX_11795001 RAL-303_100b 5330 chrX 11804648 11804690 chrX 11804777 11804819 22 128 13.5 5.5 9.5 2.1 171 chrX 11804648 intron Hsc70-3 - chrX 11804734 intron Hsc70-3 - chrX 11804819 intron Hsc70-3 - chrX_22_11800001 chrX_11800001 RAL-303_100b 5331 chrX 11838999 11839068 chrX 11839282 11839308 39 272 0.0 15.0 7.5 4.6 309 chrX 11838999 intergenic not near genes chrX 11839154 intergenic Cyp28c1 + chrX 11839308 intergenic Cyp28c1 + chrX_39_11835001 chrX_11835001 RAL-303_100b 5332 chrX 12038063 12038117 chrX 12038282 12038336 45 217 17.0 22.0 19.5 2.2 273 chrX 12038063 intergenic not near genes chrX 12038200 intergenic not near genes chrX 12038336 intergenic not near genes chrX_45_12035001 chrX_12035001 RAL-303_100b 5333 chrX 12136411 12136454 chrX 12136921 12136965 23 509 6.0 7.0 6.5 3.1 554 chrX 12136411 intron Ten-a + chrX 12136688 intron Ten-a + chrX 12136965 intron Ten-a + chrX_23_12135001 chrX_12135001 RAL-303_100b 5334 chrX 12168116 12168161 chrX 12173578 12173615 I-element 24 5464 16.0 7.5 11.8 1.9 5499 chrX 12168116 intron Ten-a + chrX 12170866 intron Ten-a + chrX 12173615 intron Ten-a + chrX_24_12170001 chrX_12170001 RAL-303_100b 5335 chrX 12194909 12194966 chrX 12195052 12195106 35 138 6.5 11.0 8.8 3.6 197 chrX 12194909 intron Ten-a + chrX 12195008 intron Ten-a + chrX 12195106 intron Ten-a + chrX_35_12195001 chrX_12195001 RAL-303_100b 5336 chrX 12202745 12202754 chrX 12202854 12202863 6 108 21.0 13.0 17.0 0.3 118 chrX 12202745 intron Ten-a + chrX 12202804 intron Ten-a + chrX 12202863 intron Ten-a + chrX_6_12200001 chrX_12200001 RAL-303_100b 5337 chrX 12202755 12202801 chrX 12202853 12202910 22 108 10.0 13.0 11.5 1.8 155 chrX 12202755 intron Ten-a + chrX 12202832 intron Ten-a + chrX 12202910 intron Ten-a + chrX_22_12200001 chrX_12200001 RAL-303_100b 5338 chrX 12241170 12241222 chrX 12241273 12241294 42 100 11.5 13.0 12.2 3.2 124 chrX 12241170 intron Ten-a + chrX 12241232 intron Ten-a + chrX 12241294 intron Ten-a + chrX_42_12240001 chrX_12240001 RAL-303_100b 5339 chrX 12245983 12245985 chrX 13949115 13949120 4 1703134 35.5 27.0 31.2 0.1 1703137 chrX 12245983 intron Ten-a + chrX 13097552 exon CG43313 - chrX 13949120 intron mamo - chrX_4_13095001 chrX_13095001 RAL-303_100b 5340 chrX 12246948 12246988 chrX 12247061 12247097 5 112 9.0 9.0 9.0 0.5 149 chrX 12246948 intron Ten-a + chrX 12247022 intron Ten-a + chrX 12247097 intron Ten-a + chrX_5_12245001 chrX_12245001 RAL-303_100b 5341 chrX 12301931 12301981 chrX 12303262 12303276 X-element 21 1325 6.0 1.0 3.5 4.7 1345 chrX 12301931 intron Ten-a + chrX 12302604 intron Ten-a + chrX 12303276 intron Ten-a + chrX_21_12300001 chrX_12300001 RAL-303_100b 5342 chrX 12348164 12348189 chrX 12348272 12348297 23 106 25.5 11.0 18.2 1.2 133 chrX 12348164 intergenic not near genes chrX 12348230 intergenic not near genes chrX 12348297 intergenic not near genes chrX_23_12345001 chrX_12345001 RAL-303_100b 5343 chrX 12350748 12350758 chrX 12350854 12350857 8 104 28.5 0.0 14.2 0.5 109 chrX 12350748 intergenic not near genes chrX 12350802 intergenic not near genes chrX 12350857 intergenic not near genes chrX_8_12350001 chrX_12350001 RAL-303_100b 5344 chrX 12350760 12350802 chrX 12350852 12350881 35 101 9.0 0.0 4.5 6.4 121 chrX 12350760 intergenic not near genes chrX 12350820 intergenic not near genes chrX 12350881 intergenic not near genes chrX_35_12350001 chrX_12350001 RAL-303_100b 5345 chrX 12375466 12375472 chrX 12375589 12375594 4 123 26.0 8.5 17.2 0.2 128 chrX 12375466 intergenic Ir11a - chrX 12375530 intergenic Ir11a - chrX 12375594 intergenic Ir11a - chrX_4_12375001 chrX_12375001 RAL-303_100b 5346 chrX 12375473 12375504 chrX 12375588 12375627 23 121 14.0 7.5 10.8 1.9 154 chrX 12375473 intergenic Ir11a - chrX 12375550 intergenic Ir11a - chrX 12375627 exon Ir11a - chrX_23_12375001 chrX_12375001 RAL-303_100b 5347 chrX 12381836 12381899 chrX 12385774 12385826 flea 17 3933 0.0 11.0 5.5 2.6 3990 chrX 12381836 intergenic not near genes chrX 12383831 intergenic not near genes chrX 12385826 intergenic not near genes chrX_17_12380001 chrX_12380001 RAL-303_100b 5348 chrX 12392770 12392829 chrX 12392876 12392935 54 104 9.5 13.5 11.5 4.3 165 chrX 12392770 intergenic not near genes chrX 12392852 intergenic not near genes chrX 12392935 intergenic not near genes chrX_54_12390001 chrX_12390001 RAL-303_100b 5349 chrX 12428322 12428374 chrX 12428456 12428511 37 133 12.5 14.0 13.2 2.6 189 chrX 12428322 intergenic not near genes chrX 12428416 intergenic not near genes chrX 12428511 intergenic not near genes chrX_37_12425001 chrX_12425001 RAL-303_100b 5350 chrX 12435344 12435362 chrX 12435447 12435465 18 103 7.0 16.0 11.5 1.4 121 chrX 12435344 exon Pkcdelta + chrX 12435404 intron Pkcdelta + chrX 12435465 intron Pkcdelta + chrX_18_12435001 chrX_12435001 RAL-303_100b 5351 chrX 12442065 12442091 chrX 12442172 12442173 5 101 11.5 2.5 7.0 0.6 108 chrX 12442065 intron Pkcdelta + chrX 12442119 intron Pkcdelta + chrX 12442173 intron Pkcdelta + chrX_5_12440001 chrX_12440001 RAL-303_100b 5352 chrX 12465448 12465477 chrX 12465549 12465578 23 100 16.0 0.0 8.0 2.6 130 chrX 12465448 exon CG42258 + chrX 12465513 intron CG42258 + chrX 12465578 intron CG42258 + chrX_23_12465001 chrX_12465001 RAL-303_100b 5353 chrX 12511300 12511351 chrX 12511407 12511460 10 108 0.0 11.0 5.5 1.5 160 chrX 12511300 intron CG2556 + chrX 12511380 intron CG2556 + chrX 12511460 intron CG2556 + chrX_10_12510001 chrX_12510001 RAL-303_100b 5354 chrX 12528843 12528849 chrX 12528944 12528950 5 101 15.0 4.0 9.5 0.5 107 chrX 12528843 intron CG43921 - chrX 12528896 intron CG43921 - chrX 12528950 intron CG43921 - chrX_5_12525001 chrX_12525001 RAL-303_100b 5355 chrX 12528851 12528887 chrX 12528943 12528961 8 92 6.0 3.5 4.8 1.4 110 chrX 12528851 intron CG43921 - chrX 12528906 intron CG43921 - chrX 12528961 intron CG43921 - chrX_8_12525001 chrX_12525001 RAL-303_100b 5356 chrX 12532624 12532660 chrX 12532795 12532806 4 154 16.0 0.0 8.0 0.4 182 chrX 12532624 intron CG43921 - chrX 12532715 intron CG43921 - chrX 12532806 intron CG43921 - chrX_4_12530001 chrX_12530001 RAL-303_100b 5357 chrX 9845361 9845361 chrX 12546496 12546496 gypsy5 7 2701135 65.5 60.5 63.0 0.1 2701135 chrX 9845361 intron CG32698 + chrX 11195928 intergenic not near genes chrX 12546496 intron CG43921 - chrX_7_11195001 chrX_11195001 RAL-303_100b 5358 chrX 12635426 12635430 chrX 12635536 12635540 4 110 9.5 21.0 15.2 0.2 114 chrX 12635426 intron Tomosyn + chrX 12635483 intron Tomosyn + chrX 12635540 intron Tomosyn + chrX_4_12635001 chrX_12635001 RAL-303_100b 5359 chrX 5190120 5190126 chrX 12649915 12649915 4 7459791 37.0 47.0 42.0 0.1 7459795 chrX 5190120 intron,intron CG15465 +,rg + chrX 8920018 intron,3` UTR rdgA +,CR44111 - chrX 12649915 intron Tomosyn + chrX_4_8920001 chrX_8920001 RAL-303_100b 5360 chrX 12705369 12705419 chrX 12705472 12705525 24 106 5.5 7.0 6.2 3.3 156 chrX 12705369 intron Smr - chrX 12705447 intron Smr - chrX 12705525 intron Smr - chrX_24_12705001 chrX_12705001 RAL-303_100b 5361 chrX 12752253 12752310 chrX 12752365 12752422 74 110 15.5 13.5 14.5 4.8 169 chrX 12752253 5` UTR CR44619 + chrX 12752338 5` UTR CR44619 + chrX 12752422 intron CR44619 + chrX_74_12750001 chrX_12750001 RAL-303_100b 5362 chrX 12837576 12837633 chrX 12837882 12837939 53 304 11.5 14.0 12.8 3.8 363 chrX 12837576 intron Pde9 - chrX 12837758 intron Pde9 - chrX 12837939 intron Pde9 - chrX_53_12835001 chrX_12835001 RAL-303_100b 5363 chrX 12853307 12853358 chrX 12853417 12853466 47 109 14.0 1.0 7.5 5.5 159 chrX 12853307 intron Pde9 - chrX 12853386 intron Pde9 - chrX 12853466 intron Pde9 - chrX_47_12850001 chrX_12850001 RAL-303_100b 5364 chrX 12859058 12859117 chrX 12859163 12859222 31 102 11.0 13.0 12.0 2.4 164 chrX 12859058 intron Pde9 - chrX 12859140 intron Pde9 - chrX 12859222 intron Pde9 - chrX_31_12855001 chrX_12855001 RAL-303_100b 5365 chrX 12912608 12912649 chrX 12912730 12912770 14 122 3.5 5.0 4.2 2.7 162 chrX 12912608 5` UTR CR45625 + chrX 12912689 5` UTR CR45625 + chrX 12912770 5` UTR CR45625 + chrX_14_12910001 chrX_12910001 RAL-303_100b 5366 chrX 12930573 12930607 chrX 12937714 12937745 HMS-Beagle 19 7140 7.0 30.0 18.5 1.0 7172 chrX 12930573 intron fne + chrX 12934159 intron fne + chrX 12937745 intron fne + chrX_19_12930001 chrX_12930001 RAL-303_100b 5367 chrX 12946234 12946234 chrX 18572525 18572527 4 5626292 58.0 53.0 55.5 0.1 5626293 chrX 12946234 3` UTR fne + chrX 15759380 intron Graf - chrX 18572527 intergenic not near genes chrX_4_15755001 chrX_15755001 RAL-303_100b 5368 chrX 12953868 12953927 chrX 12954029 12954091 12 161 2.5 8.5 5.5 1.8 223 chrX 12953868 intron hec - chrX 12953980 intron hec - chrX 12954091 intron hec - chrX_12_12950001 chrX_12950001 RAL-303_100b 5369 chrX 12971664 12971722 chrX 12971766 12971824 27 99 15.0 21.0 18.0 1.4 160 chrX 12971664 intron,exon CR43636 -,CG15721 + chrX 12971744 intron,exon CR43636 -,CG15721 + chrX 12971824 intron,exon CR43636 -,CG15721 + chrX_27_12970001 chrX_12970001 RAL-303_100b 5370 chrX 12977044 12977050 chrX 12977145 12977151 4 101 1.0 23.5 12.2 0.3 107 chrX 12977044 intergenic not near genes chrX 12977098 intergenic not near genes chrX 12977151 intergenic not near genes chrX_4_12975001 chrX_12975001 RAL-303_100b 5371 chrX 12977052 12977060 chrX 12977144 12977161 6 100 0.5 23.0 11.8 0.5 109 chrX 12977052 intergenic not near genes chrX 12977106 intergenic not near genes chrX 12977161 intergenic not near genes chrX_6_12975001 chrX_12975001 RAL-303_100b 5372 chrX 13099104 13099138 chrX 13099222 13099256 10 118 0.0 15.0 7.5 1.2 152 chrX 13099104 intron CG43313 - chrX 13099180 intron CG43313 - chrX 13099256 intron CG43313 - chrX_10_13095001 chrX_13095001 RAL-303_100b 5373 chrX 13146573 13146630 chrX 13146686 13146743 53 112 11.5 12.5 12.0 4.1 170 chrX 13146573 intron CG32645 + chrX 13146658 intron CG32645 + chrX 13146743 intron CG32645 + chrX_53_13145001 chrX_13145001 RAL-303_100b 5374 chrX 13172325 13172381 chrX 13172426 13172482 50 99 11.0 10.5 10.8 4.2 157 chrX 13172325 exon CG34411 - chrX 13172404 intron CG34411 - chrX 13172482 intron CG34411 - chrX_50_13170001 chrX_13170001 RAL-303_100b 5375 chrX 13235876 13235890 chrX 13235980 13235994 15 104 24.0 15.5 19.8 0.7 118 chrX 13235876 intron mew - chrX 13235935 intron,3` UTR mew -,CG32639 - chrX 13235994 intron,3` UTR mew -,CG32639 - chrX_15_13235001 chrX_13235001 RAL-303_100b 5376 chrX 13235891 13235929 chrX 13235976 13236033 25 100 10.5 12.0 11.2 2.0 142 chrX 13235891 intron mew - chrX 13235962 intron,3` UTR mew -,CG32639 - chrX 13236033 intron,3` UTR mew -,CG32639 - chrX_25_13235001 chrX_13235001 RAL-303_100b 5377 chrX 13236856 13236900 chrX 13236963 13237010 15 109 0.5 12.0 6.2 2.1 154 chrX 13236856 intron mew - chrX 13236933 intron mew - chrX 13237010 intron mew - chrX_15_13235001 chrX_13235001 RAL-303_100b 5378 chrX 13269189 13269231 chrX 13269288 13269312 26 98 0.5 0.0 0.2 21.7 123 chrX 13269189 intron HDAC4 - chrX 13269250 intron HDAC4 - chrX 13269312 intron HDAC4 - chrX_26_13265001 chrX_13265001 RAL-303_100b 5379 chrX 13272145 13272181 chrX 13272255 13272291 30 108 20.5 17.0 18.8 1.5 146 chrX 13272145 intron HDAC4 - chrX 13272218 intron HDAC4 - chrX 13272291 intron HDAC4 - chrX_30_13270001 chrX_13270001 RAL-303_100b 5380 chrX 13278133 13278177 chrX 13278241 13278278 29 107 15.0 6.0 10.5 2.5 145 chrX 13278133 intron HDAC4 - chrX 13278206 intron HDAC4 - chrX 13278278 intron HDAC4 - chrX_29_13275001 chrX_13275001 RAL-303_100b 5381 chrX 13347037 13347039 chrX 13347169 13347171 4 132 0.0 19.5 9.8 0.4 134 chrX 13347037 intergenic not near genes chrX 13347104 intergenic not near genes chrX 13347171 intergenic not near genes chrX_4_13345001 chrX_13345001 RAL-303_100b 5382 chrX 13358640 13358643 chrX 13358712 13358745 6 94 0.0 6.0 3.0 1.5 105 chrX 13358640 intergenic not near genes chrX 13358692 intergenic not near genes chrX 13358745 intergenic not near genes chrX_6_13355001 chrX_13355001 RAL-303_100b 5383 chrX 13374813 13374863 chrX 13374917 13374968 32 99 12.0 13.0 12.5 2.4 155 chrX 13374813 intron CG1640 + chrX 13374890 intron CG1640 + chrX 13374968 intron CG1640 + chrX_32_13370001 chrX_13370001 RAL-303_100b 5384 chrX 13401457 13401519 chrX 13401834 13401896 jockey 29 376 6.0 9.5 7.8 3.3 439 chrX 13401457 intergenic CG1673 +,CG12725 - chrX 13401676 intergenic CG12725 -,CG1673 + chrX 13401896 3` UTR CG12725 - chrX_29_13400001 chrX_13400001 RAL-303_100b 5385 chrX 13421448 13421456 chrX 13421557 13421565 4 109 0.0 14.0 7.0 0.5 117 chrX 13421448 intergenic Set2 + chrX 13421506 intergenic Set2 + chrX 13421565 intergenic not near genes chrX_4_13420001 chrX_13420001 RAL-303_100b 5386 chrX 13421457 13421464 chrX 13421551 13421553 13 106 0.0 12.0 6.0 1.9 96 chrX 13421457 intergenic Set2 + chrX 13421505 intergenic Set2 + chrX 13421553 intergenic not near genes chrX_13_13420001 chrX_13420001 RAL-303_100b 5387 chrX 13429469 13429483 chrX 13430643 13430657 jockey 10 1174 0.0 32.5 16.2 0.6 1188 chrX 13429469 intergenic not near genes chrX 13430063 intergenic not near genes chrX 13430657 intergenic not near genes chrX_10_13430001 chrX_13430001 RAL-303_100b 5388 chrX 13435353 13435410 chrX 13435477 13435517 51 121 12.5 9.5 11.0 4.2 164 chrX 13435353 intergenic not near genes chrX 13435435 intergenic not near genes chrX 13435517 intergenic not near genes chrX_51_13435001 chrX_13435001 RAL-303_100b 5389 chrX 13442118 13442170 chrX 13442234 13442286 41 114 2.5 13.5 8.0 4.6 168 chrX 13442118 intergenic not near genes chrX 13442202 intergenic not near genes chrX 13442286 intergenic not near genes chrX_41_13440001 chrX_13440001 RAL-303_100b 5390 chrX 13443402 13443409 chrX 13443504 13443511 6 102 31.0 30.5 30.8 0.2 109 chrX 13443402 intergenic not near genes chrX 13443456 intergenic not near genes chrX 13443511 intergenic not near genes chrX_6_13440001 chrX_13440001 RAL-303_100b 5391 chrX 13443413 13443420 chrX 13443490 13443511 9 97 28.5 24.5 26.5 0.3 98 chrX 13443413 intergenic not near genes chrX 13443462 intergenic not near genes chrX 13443511 intergenic not near genes chrX_9_13440001 chrX_13440001 RAL-303_100b 5392 chrX 13463625 13463642 chrX 13469227 13469244 mdg3 14 5602 18.5 14.0 16.2 0.8 5619 chrX 13463625 intron Neto + chrX 13466434 intron Neto + chrX 13469244 intron Neto + chrX_14_13465001 chrX_13465001 RAL-303_100b 5393 chrX 13463643 13463675 chrX 13469224 13469277 mdg3 26 5599 12.5 12.5 12.5 1.9 5634 chrX 13463643 intron Neto + chrX 13466460 intron Neto + chrX 13469277 intron Neto + chrX_26_13465001 chrX_13465001 RAL-303_100b 5394 chrX 13484799 13484857 chrX 13484921 13484979 30 119 14.5 10.0 12.2 2.3 180 chrX 13484799 intron Neto + chrX 13484889 intron Neto + chrX 13484979 intron Neto + chrX_30_13480001 chrX_13480001 RAL-303_100b 5395 chrX 13550462 13550481 chrX 13550569 13550588 8 106 28.5 20.5 24.5 0.3 126 chrX 13550462 intergenic not near genes chrX 13550525 intergenic not near genes chrX 13550588 intergenic not near genes chrX_8_13550001 chrX_13550001 RAL-303_100b 5396 chrX 13593202 13593228 chrX 13593307 13593333 10 104 33.5 32.0 32.8 0.3 131 chrX 13593202 3` UTR Tango13 + chrX 13593268 intergenic Tango13 +,up - chrX 13593333 intergenic Tango13 +,up - chrX_10_13590001 chrX_13590001 RAL-303_100b 5397 chrX 13679443 13679497 chrX 13679574 13679628 17 131 24.5 31.0 27.8 0.6 185 chrX 13679443 intron CG12177 - chrX 13679536 intron CG12177 - chrX 13679628 intron CG12177 - chrX_17_13675001 chrX_13675001 RAL-303_100b 5398 chrX 13710916 13710955 chrX 13711021 13711060 12 105 29.5 35.5 32.5 0.4 144 chrX 13710916 intron,intron CG9940 -,NnaD + chrX 13710988 intron,intron CG9940 -,NnaD + chrX 13711060 intron,intron CG9940 -,NnaD + chrX_12_13710001 chrX_13710001 RAL-303_100b 5399 chrX 13734074 13734095 chrX 13734195 13734215 7 121 44.0 39.5 41.8 0.2 141 chrX 13734074 intron g - chrX 13734144 intron g - chrX 13734215 intron g - chrX_7_13730001 chrX_13730001 RAL-303_100b 5400 chrX 13734098 13734105 chrX 13734194 13734226 6 117 39.5 39.5 39.5 0.1 128 chrX 13734098 intron g - chrX 13734162 intron g - chrX 13734226 intron g - chrX_6_13730001 chrX_13730001 RAL-303_100b 5401 chrX 13791129 13791185 chrX 13791305 13791350 28 174 10.5 0.5 5.5 4.3 221 chrX 13791129 intron inaE + chrX 13791240 intron inaE + chrX 13791350 intron inaE + chrX_28_13790001 chrX_13790001 RAL-303_100b 5402 chrX 13794589 13794645 chrX 13794744 13794800 15 154 36.5 40.5 38.5 0.4 211 chrX 13794589 intron inaE + chrX 13794694 intron inaE + chrX 13794800 intron inaE + chrX_15_13790001 chrX_13790001 RAL-303_100b 5403 chrX 13821447 13821476 chrX 13821549 13821568 29 99 13.5 13.0 13.2 2.0 121 chrX 13821447 intron Clic - chrX 13821508 intron Clic - chrX 13821568 intron Clic - chrX_29_13820001 chrX_13820001 RAL-303_100b 5404 chrX 13843347 13843403 chrX 13843443 13843500 14 101 36.0 34.0 35.0 0.4 153 chrX 13843347 intron AMPdeam - chrX 13843424 intron AMPdeam - chrX 13843500 intron AMPdeam - chrX_14_13840001 chrX_13840001 RAL-303_100b 5405 chrX 13934269 13934316 chrX 13934377 13934424 22 106 13.5 12.0 12.8 1.6 155 chrX 13934269 intron mamo - chrX 13934346 intron mamo - chrX 13934424 intron mamo - chrX_22_13930001 chrX_13930001 RAL-303_100b 5406 chrX 13935491 13935527 chrX 13935599 13935635 30 106 15.0 22.5 18.8 1.5 144 chrX 13935491 intron mamo - chrX 13935563 intron mamo - chrX 13935635 intron mamo - chrX_30_13935001 chrX_13935001 RAL-303_100b 5407 chrX 13937953 13938006 chrX 13941249 13941297 I-element 17 3293 5.5 5.5 5.5 2.6 3344 chrX 13937953 intron mamo - chrX 13939625 intron mamo - chrX 13941297 intron mamo - chrX_17_13935001 chrX_13935001 RAL-303_100b 5408 chrX 13943272 13943293 chrX 13943381 13943409 19 115 0.0 22.5 11.2 1.6 137 chrX 13943272 intron mamo - chrX 13943340 intron mamo - chrX 13943409 intron mamo - chrX_19_13940001 chrX_13940001 RAL-303_100b 5409 chrX 13943294 13943301 chrX 13943370 13943409 5 97 0.0 19.0 9.5 0.5 115 chrX 13943294 intron mamo - chrX 13943352 intron mamo - chrX 13943409 intron mamo - chrX_5_13940001 chrX_13940001 RAL-303_100b 5410 chrX 13974209 13974258 chrX 13974324 13974374 18 116 31.5 23.5 27.5 0.6 165 chrX 13974209 intron mamo - chrX 13974292 intron mamo - chrX 13974374 intron mamo - chrX_18_13970001 chrX_13970001 RAL-303_100b 5411 chrX 13975876 13975902 chrX 13975978 13976004 8 101 8.5 25.0 16.8 0.4 128 chrX 13975876 intron mamo - chrX 13975940 intron mamo - chrX 13976004 intron mamo - chrX_8_13975001 chrX_13975001 RAL-303_100b 5412 chrX 14064140 14064164 chrX 14064255 14064286 7 120 4.0 7.5 5.8 1.0 146 chrX 14064140 intergenic not near genes chrX 14064213 intergenic not near genes chrX 14064286 intergenic not near genes chrX_7_14060001 chrX_14060001 RAL-303_100b 5413 chrX 14070787 14070826 chrX 14070888 14070929 19 102 32.5 37.5 35.0 0.5 142 chrX 14070787 intergenic not near genes chrX 14070858 intergenic not near genes chrX 14070929 intergenic not near genes chrX_19_14070001 chrX_14070001 RAL-303_100b 5414 chrX 14078882 14078936 chrX 14079059 14079113 16 177 16.0 13.0 14.5 1.0 231 chrX 14078882 intergenic not near genes chrX 14078998 intergenic not near genes chrX 14079113 intergenic not near genes chrX_16_14075001 chrX_14075001 RAL-303_100b 5415 chrX 14091662 14091674 chrX 14092730 14092731 6 1066 31.0 20.5 25.8 0.2 1069 chrX 14091662 intergenic not near genes chrX 14092196 intergenic not near genes chrX 14092731 intergenic not near genes chrX_6_14090001 chrX_14090001 RAL-303_100b 5416 chrX 14104998 14105056 chrX 14114174 14114211 roo 59 9172 9.0 10.0 9.5 5.6 9213 chrX 14104998 intergenic not near genes chrX 14109604 intergenic not near genes chrX 14114211 5` UTR CR44657 + chrX_59_14105001 chrX_14105001 RAL-303_100b 5417 chrX 14122592 14122625 chrX 14122693 14122726 17 99 34.0 30.0 32.0 0.5 134 chrX 14122592 intergenic not near genes chrX 14122659 intergenic not near genes chrX 14122726 intergenic not near genes chrX_17_14120001 chrX_14120001 RAL-303_100b 5418 chrX 14131468 14131524 chrX 14131571 14131630 39 99 8.5 11.5 10.0 3.5 162 chrX 14131468 intergenic not near genes chrX 14131549 intergenic not near genes chrX 14131630 intergenic not near genes chrX_39_14130001 chrX_14130001 RAL-303_100b 5419 chrX 14157571 14157615 chrX 14163253 14163265 297 16 5677 6.5 7.5 7.0 2.0 5694 chrX 14157571 intergenic not near genes chrX 14160418 intergenic not near genes chrX 14163265 intergenic not near genes chrX_16_14160001 chrX_14160001 RAL-303_100b 5420 chrX 14174182 14174229 chrX 14174287 14174334 24 104 18.0 14.5 16.2 1.4 152 chrX 14174182 intergenic not near genes chrX 14174258 intergenic CG1368 + chrX 14174334 intergenic CG1368 + chrX_24_14170001 chrX_14170001 RAL-303_100b 5421 chrX 14188047 14188086 chrX 14188155 14188190 18 107 34.5 37.5 36.0 0.5 143 chrX 14188047 intergenic CG12481 + chrX 14188118 intergenic CG12481 + chrX 14188190 intergenic CG12481 + chrX_18_14185001 chrX_14185001 RAL-303_100b 5422 chrX 14190729 14190783 chrX 14191009 14191063 20 279 34.0 30.0 32.0 0.6 334 chrX 14190729 3` UTR CG11585 + chrX 14190896 intergenic CG11585 +,CG13403 - chrX 14191063 intergenic CG13403 -,CG11585 + chrX_20_14190001 chrX_14190001 RAL-303_100b 5423 chrX 14209444 14209489 chrX 14209560 14209604 13 113 11.0 9.0 10.0 1.2 160 chrX 14209444 intron,intron l(1)G0007 +,l(1)G0469 - chrX 14209524 intron,intron l(1)G0007 +,l(1)G0469 - chrX 14209604 intron,intron l(1)G0007 +,l(1)G0469 - chrX_13_14205001 chrX_14205001 RAL-303_100b 5424 chrX 14318340 14318379 chrX 14318460 14318504 44 123 9.5 23.5 16.5 2.5 164 chrX 14318340 intergenic not near genes chrX 14318422 intergenic not near genes chrX 14318504 intergenic not near genes chrX_44_14315001 chrX_14315001 RAL-303_100b 5425 chrX 14353418 14353441 chrX 14353526 14353546 5 105 27.5 28.5 28.0 0.2 128 chrX 14353418 intron dpr8 + chrX 14353482 intron dpr8 + chrX 14353546 intron dpr8 + chrX_5_14350001 chrX_14350001 RAL-303_100b 5426 chrX 14353442 14353465 chrX 14353525 14353558 10 92 25.5 28.5 27.0 0.4 116 chrX 14353442 intron dpr8 + chrX 14353500 intron dpr8 + chrX 14353558 intron dpr8 + chrX_10_14350001 chrX_14350001 RAL-303_100b 5427 chrX 14356976 14356986 chrX 14357080 14357084 4 102 43.5 38.5 41.0 0.1 108 chrX 14356976 intron dpr8 + chrX 14357030 intron dpr8 + chrX 14357084 intron dpr8 + chrX_4_14355001 chrX_14355001 RAL-303_100b 5428 chrX 14356987 14357028 chrX 14357078 14357093 21 99 34.0 38.5 36.2 0.6 106 chrX 14356987 intron dpr8 + chrX 14357040 intron dpr8 + chrX 14357093 intron dpr8 + chrX_21_14355001 chrX_14355001 RAL-303_100b 5429 chrX 14381390 14381412 chrX 14381568 14381591 9 179 35.0 31.5 33.2 0.3 201 chrX 14381390 intron,3` UTR dpr8 +,betaNACtes4 + chrX 14381490 intron dpr8 + chrX 14381591 intron dpr8 + chrX_9_14380001 chrX_14380001 RAL-303_100b 5430 chrX 14383940 14383953 chrX 14384049 14384062 6 109 40.0 52.5 46.2 0.1 122 chrX 14383940 intron dpr8 + chrX 14384001 intron dpr8 + chrX 14384062 intron dpr8 + chrX_6_14380001 chrX_14380001 RAL-303_100b 5431 chrX 14384417 14384445 chrX 14384520 14384548 12 101 28.5 35.5 32.0 0.4 131 chrX 14384417 intron dpr8 + chrX 14384482 intron dpr8 + chrX 14384548 intron dpr8 + chrX_12_14380001 chrX_14380001 RAL-303_100b 5432 chrX 14395076 14395113 chrX 14395201 14395237 7 124 23.5 28.5 26.0 0.3 161 chrX 14395076 intron dpr8 + chrX 14395156 intron dpr8 + chrX 14395237 intron dpr8 + chrX_7_14395001 chrX_14395001 RAL-303_100b 5433 chrX 14401531 14401572 chrX 14401665 14401705 6 133 21.0 23.5 22.2 0.3 174 chrX 14401531 intron dpr8 + chrX 14401618 intron dpr8 + chrX 14401705 intron dpr8 + chrX_6_14400001 chrX_14400001 RAL-303_100b 5434 chrX 14407259 14407272 chrX 14407366 14407379 8 107 15.5 11.5 13.5 0.6 120 chrX 14407259 intron dpr8 + chrX 14407319 intron dpr8 + chrX 14407379 intron dpr8 + chrX_8_14405001 chrX_14405001 RAL-303_100b 5435 chrX 14411236 14411291 chrX 14411339 14411394 33 100 28.5 30.0 29.2 1.1 158 chrX 14411236 intron dpr8 + chrX 14411315 intron dpr8 + chrX 14411394 intron dpr8 + chrX_33_14410001 chrX_14410001 RAL-303_100b 5436 chrX 14416288 14416335 chrX 14421080 14421122 F-element 20 4790 8.0 13.5 10.8 1.7 4834 chrX 14416288 intron dpr8 + chrX 14418705 intron dpr8 + chrX 14421122 intron dpr8 + chrX_20_14415001 chrX_14415001 RAL-303_100b 5437 chrX 14484942 14484995 chrX 14485056 14485109 28 113 0.0 8.5 4.2 5.4 167 chrX 14484942 intergenic not near genes chrX 14485026 intergenic not near genes chrX 14485109 intergenic not near genes chrX_28_14485001 chrX_14485001 RAL-303_100b 5438 chrX 14500480 14500535 chrX 14500606 14500661 20 125 34.0 34.0 34.0 0.6 181 chrX 14500480 intergenic not near genes chrX 14500570 intergenic not near genes chrX 14500661 intergenic not near genes chrX_20_14500001 chrX_14500001 RAL-303_100b 5439 chrX 14532569 14532612 chrX 14532705 14532758 22 142 28.5 28.5 28.5 0.7 189 chrX 14532569 intergenic not near genes chrX 14532664 intergenic not near genes chrX 14532758 intergenic not near genes chrX_22_14530001 chrX_14530001 RAL-303_100b 5440 chrX 14570050 14570105 chrX 14570157 14570212 19 105 27.5 25.0 26.2 0.7 162 chrX 14570050 intergenic not near genes chrX 14570131 intergenic not near genes chrX 14570212 intergenic not near genes chrX_19_14570001 chrX_14570001 RAL-303_100b 5441 chrX 14589685 14589706 chrX 14589951 14589972 pogo 10 264 14.0 5.5 9.8 0.9 287 chrX 14589685 intron CG9413 - chrX 14589828 intron CG9413 - chrX 14589972 intron CG9413 - chrX_10_14585001 chrX_14585001 RAL-303_100b 5442 chrX 14597730 14597747 chrX 14597818 14597839 16 97 0.5 13.0 6.8 2.1 109 chrX 14597730 intron CG9413 - chrX 14597784 intron CG9413 - chrX 14597839 intron CG9413 - chrX_16_14595001 chrX_14595001 RAL-303_100b 5443 chrX 14597748 14597752 chrX 14597813 14597854 8 92 0.5 10.5 5.5 1.2 106 chrX 14597748 intron CG9413 - chrX 14597801 intron CG9413 - chrX 14597854 intron CG9413 - chrX_8_14595001 chrX_14595001 RAL-303_100b 5444 chrX 14628160 14628216 chrX 14628276 14628332 32 111 42.0 37.0 39.5 0.8 172 chrX 14628160 intron NetA - chrX 14628246 intron NetA - chrX 14628332 intron NetA - chrX_32_14625001 chrX_14625001 RAL-303_100b 5445 chrX 14636441 14636445 chrX 14641907 14641911 I-element 4 5466 37.5 21.0 29.2 0.1 5470 chrX 14636441 intron NetA - chrX 14639176 intron NetA - chrX 14641911 intron NetA - chrX_4_14635001 chrX_14635001 RAL-303_100b 5446 chrX 14636448 14636458 chrX 14641904 14641908 I-element 13 5463 33.5 20.5 27.0 0.5 5460 chrX 14636448 intron NetA - chrX 14639178 intron NetA - chrX 14641908 intron NetA - chrX_13_14635001 chrX_14635001 RAL-303_100b 5447 chrX 14636460 14636486 chrX 14641903 14641952 I-element 26 5462 19.5 20.5 20.0 1.2 5492 chrX 14636460 intron NetA - chrX 14639206 intron NetA - chrX 14641952 intron NetA - chrX_26_14635001 chrX_14635001 RAL-303_100b 5448 chrX 14714023 14714064 chrX 14714130 14714171 19 107 27.5 28.5 28.0 0.7 148 chrX 14714023 intron NetB - chrX 14714097 intron NetB - chrX 14714171 intron NetB - chrX_19_14710001 chrX_14710001 RAL-303_100b 5449 chrX 14756236 14756275 chrX 14756388 14756427 13 147 42.0 35.0 38.5 0.3 191 chrX 14756236 intergenic not near genes chrX 14756332 intergenic not near genes chrX 14756427 intergenic not near genes chrX_13_14755001 chrX_14755001 RAL-303_100b 5450 chrX 14767918 14767977 chrX 14768023 14768082 16 101 25.5 21.5 23.5 0.7 164 chrX 14767918 intergenic not near genes chrX 14768000 intergenic not near genes chrX 14768082 intergenic not near genes chrX_16_14765001 chrX_14765001 RAL-303_100b 5451 chrX 14774962 14775012 chrX 14775064 14775115 15 100 32.5 32.5 32.5 0.4 153 chrX 14774962 intergenic CG5334 + chrX 14775038 intergenic CG5334 + chrX 14775115 intergenic CG5334 + chrX_15_14775001 chrX_14775001 RAL-303_100b 5452 chrX 14778010 14778025 chrX 14782832 14782842 Doc 15 4822 33.5 18.5 26.0 0.6 4832 chrX 14778010 intergenic CG5347 + chrX 14780426 intergenic not near genes chrX 14782842 intergenic Ag5r2 - chrX_15_14780001 chrX_14780001 RAL-303_100b 5453 chrX 14778026 14778059 chrX 14782831 14782860 Doc 24 4819 14.0 18.0 16.0 1.4 4834 chrX 14778026 intergenic CG5347 + chrX 14780443 intergenic not near genes chrX 14782860 intergenic Ag5r2 - chrX_24_14780001 chrX_14780001 RAL-303_100b 5454 chrX 14806734 14806775 chrX 14806847 14806888 11 111 34.5 25.0 29.8 0.4 154 chrX 14806734 intron rut - chrX 14806811 intron rut - chrX 14806888 intron rut - chrX_11_14805001 chrX_14805001 RAL-303_100b 5455 chrX 14818739 14818796 chrX 14823968 14824025 copia 32 5226 13.5 14.5 14.0 2.1 5286 chrX 14818739 intron rut - chrX 14821382 intron rut - chrX 14824025 intron rut - chrX_32_14820001 chrX_14820001 RAL-303_100b 5456 chrX 14881707 14881755 chrX 14881822 14881870 11 113 30.0 34.5 32.2 0.3 163 chrX 14881707 intron,intron,intron Flo2 +,CG45064 -,CG45065 - chrX 14881788 intron,intron,intron Flo2 +,CG45064 -,CG45065 - chrX 14881870 intron,intron,intron Flo2 +,CG45064 -,CG45065 - chrX_11_14880001 chrX_14880001 RAL-303_100b 5457 chrX 14883572 14883590 chrX 14883673 14883690 5 101 38.5 28.0 33.2 0.1 118 chrX 14883572 intron Flo2 + chrX 14883631 intron Flo2 + chrX 14883690 intron Flo2 + chrX_5_14880001 chrX_14880001 RAL-303_100b 5458 chrX 14883591 14883614 chrX 14883672 14883715 9 99 37.0 29.0 33.0 0.3 124 chrX 14883591 intron Flo2 + chrX 14883653 intron Flo2 + chrX 14883715 intron Flo2 + chrX_9_14880001 chrX_14880001 RAL-303_100b 5459 chrX 14917841 14917887 chrX 14917973 14918011 18 131 68.5 84.0 76.2 0.2 170 chrX 14917841 intron,exon Flo2 +,Eo - chrX 14917926 intron,exon Flo2 +,Eo - chrX 14918011 intron,exon Flo2 +,Eo - chrX_18_14915001 chrX_14915001 RAL-303_100b 5460 chrX 14936819 14936891 chrX 14946115 14946173 roo 44 9285 0.0 4.5 2.2 13.8 9354 chrX 14936819 intron pdgy - chrX 14941496 intron pdgy - chrX 14946173 intron pdgy - chrX_44_14940001 chrX_14940001 RAL-303_100b 5461 chrX 14968050 14968100 chrX 14968154 14968204 23 102 1.0 13.0 7.0 2.9 154 chrX 14968050 intron eag + chrX 14968127 intron eag + chrX 14968204 intron eag + chrX_23_14965001 chrX_14965001 RAL-303_100b 5462 chrX 2912171 2912172 chrX 14985241 14985242 6 12073069 44.5 40.5 42.5 0.1 12073071 chrX 2912171 intron kirre + chrX 8948706 intron rdgA + chrX 14985242 intron eag + chrX_6_8945001 chrX_8945001 RAL-303_100b 5463 chrX 15070157 15070360 chrX 15070275 15070470 32 119 0.0 0.0 0.0 32.0 313 chrX 15070157 3` UTR Lsd-2 - chrX 15070314 3` UTR Lsd-2 - chrX 15070470 3` UTR Lsd-2 - chrX_32_15070001 chrX_15070001 RAL-303_100b 5464 chrX 15225378 15225421 chrX 15225496 15225539 6 118 40.0 34.0 37.0 0.2 161 chrX 15225378 intergenic CR44430 + chrX 15225458 intergenic CR44430 + chrX 15225539 5` UTR CR44430 + chrX_6_15225001 chrX_15225001 RAL-303_100b 5465 chrX 15228476 15228525 chrX 15228742 15228796 26 270 26.0 24.0 25.0 1.0 320 chrX 15228476 intergenic CG9101 - chrX 15228636 intergenic CG9101 - chrX 15228796 3` UTR CG9101 - chrX_26_15225001 chrX_15225001 RAL-303_100b 5466 chrX 15247231 15247294 chrX 15247342 15247404 12 109 24.0 27.0 25.5 0.5 173 chrX 15247231 intergenic not near genes chrX 15247318 intergenic not near genes chrX 15247404 intergenic not near genes chrX_12_15245001 chrX_15245001 RAL-303_100b 5467 chrX 15248247 15248283 chrX 15248348 15248384 10 100 20.5 16.5 18.5 0.5 137 chrX 15248247 intergenic not near genes chrX 15248316 intergenic not near genes chrX 15248384 intergenic not near genes chrX_10_15245001 chrX_15245001 RAL-303_100b 5468 chrX 15273692 15273712 chrX 15274871 15274904 1360 20 1184 26.0 14.0 20.0 1.0 1212 chrX 15273692 intergenic not near genes chrX 15274298 intergenic not near genes chrX 15274904 intergenic not near genes chrX_20_15270001 chrX_15270001 RAL-303_100b 5469 chrX 15273714 15273738 chrX 15274869 15274885 1360 21 1182 13.0 14.0 13.5 1.4 1171 chrX 15273714 intergenic not near genes chrX 15274300 intergenic not near genes chrX 15274885 intergenic not near genes chrX_21_15270001 chrX_15270001 RAL-303_100b 5470 chrX 15277615 15277669 chrX 15277720 15277779 38 107 6.5 10.5 8.5 4.0 164 chrX 15277615 intergenic not near genes chrX 15277697 intergenic not near genes chrX 15277779 intergenic not near genes chrX_38_15275001 chrX_15275001 RAL-303_100b 5471 chrX 15326713 15326718 chrX 15326934 15326941 I-element 5 223 2.5 9.0 5.8 0.7 228 chrX 15326713 3` UTR Top1 + chrX 15326827 3` UTR Top1 + chrX 15326941 3` UTR Top1 + chrX_5_15325001 chrX_15325001 RAL-303_100b 5472 chrX 15358287 15358340 chrX 15358400 15358453 18 113 14.5 26.5 20.5 0.8 166 chrX 15358287 intron acj6 - chrX 15358370 intron acj6 - chrX 15358453 intron acj6 - chrX_18_15355001 chrX_15355001 RAL-303_100b 5473 chrX 15374450 15374460 chrX 15374565 15374575 6 114 48.0 34.5 41.2 0.1 125 chrX 15374450 intron acj6 - chrX 15374512 intron acj6 - chrX 15374575 intron acj6 - chrX_6_15370001 chrX_15370001 RAL-303_100b 5474 chrX 15413028 15413088 chrX 15417355 15417380 Juan 39 4323 12.0 14.0 13.0 2.8 4352 chrX 15413028 intron Cngl - chrX 15415204 intron Cngl - chrX 15417380 intron Cngl - chrX_39_15415001 chrX_15415001 RAL-303_100b 5475 chrX 15421900 15421947 chrX 15423431 15423483 pogo 10 1536 24.5 27.0 25.8 0.4 1583 chrX 15421900 intron Cngl - chrX 15422692 intron Cngl - chrX 15423483 intron Cngl - chrX_10_15420001 chrX_15420001 RAL-303_100b 5476 chrX 15435687 15435693 chrX 15436140 15436146 rover 8 456 0.5 34.5 17.5 0.4 459 chrX 15435687 intron Cngl - chrX 15435916 intron Cngl - chrX 15436146 intron Cngl - chrX_8_15435001 chrX_15435001 RAL-303_100b 5477 chrX 15435694 15435705 chrX 15436113 15436138 rover 13 453 0.5 23.5 12.0 1.0 444 chrX 15435694 intron Cngl - chrX 15435916 intron Cngl - chrX 15436138 intron Cngl - chrX_13_15435001 chrX_15435001 RAL-303_100b 5478 chrX 15519772 15519831 chrX 15519875 15519934 52 100 11.0 11.0 11.0 4.3 162 chrX 15519772 intron Ac13E - chrX 15519853 intron Ac13E - chrX 15519934 exon Ac13E - chrX_52_15515001 chrX_15515001 RAL-303_100b 5479 chrX 15529245 15529275 chrX 15529351 15529381 12 103 11.5 9.0 10.2 1.1 136 chrX 15529245 intron Ac13E - chrX 15529313 intron Ac13E - chrX 15529381 intron Ac13E - chrX_12_15525001 chrX_15525001 RAL-303_100b 5480 chrX 15529277 15529296 chrX 15529347 15529347 13 93 7.0 8.0 7.5 1.5 70 chrX 15529277 intron Ac13E - chrX 15529312 intron Ac13E - chrX 15529347 intron Ac13E - chrX_13_15525001 chrX_15525001 RAL-303_100b 5481 chrX 15536673 15536689 chrX 15536775 15536791 7 101 38.5 27.5 33.0 0.2 118 chrX 15536673 intron Ac13E - chrX 15536732 intron Ac13E - chrX 15536791 intron Ac13E - chrX_7_15535001 chrX_15535001 RAL-303_100b 5482 chrX 15536692 15536710 chrX 15536776 15536787 10 94 28.0 26.5 27.2 0.4 95 chrX 15536692 intron Ac13E - chrX 15536740 intron Ac13E - chrX 15536787 intron Ac13E - chrX_10_15535001 chrX_15535001 RAL-303_100b 5483 chrX 15591183 15591206 chrX 15591276 15591293 17 99 1.0 18.5 9.8 1.6 110 chrX 15591183 intron CG9220 - chrX 15591238 intron CG9220 - chrX 15591293 intron CG9220 - chrX_17_15590001 chrX_15590001 RAL-303_100b 5484 chrX 15678009 15678067 chrX 15678112 15678157 31 101 7.5 11.5 9.5 3.0 148 chrX 15678009 intergenic CG12708 + chrX 15678083 intergenic CG12708 + chrX 15678157 intergenic CG12708 + chrX_31_15675001 chrX_15675001 RAL-303_100b 5485 chrX 15935022 15935033 chrX 15935137 15935148 12 115 20.5 11.0 15.8 0.7 126 chrX 15935022 intron Stim - chrX 15935085 intron Stim - chrX 15935148 intron Stim - chrX_12_15935001 chrX_15935001 RAL-303_100b 5486 chrX 15935036 15935075 chrX 15935136 15935190 31 114 7.5 10.5 9.0 3.1 154 chrX 15935036 intron Stim - chrX 15935113 intron Stim - chrX 15935190 intron Stim - chrX_31_15935001 chrX_15935001 RAL-303_100b 5487 chrX 15959513 15959569 chrX 15959626 15959682 26 111 12.0 8.0 10.0 2.4 169 chrX 15959513 intron mmd - chrX 15959598 intron mmd - chrX 15959682 intron mmd - chrX_26_15955001 chrX_15955001 RAL-303_100b 5488 chrX 15967276 15967280 chrX 15967393 15967394 4 116 0.0 0.0 0.0 4.0 118 chrX 15967276 intron mmd - chrX 15967335 intron mmd - chrX 15967394 intron mmd - chrX_4_15965001 chrX_15965001 RAL-303_100b 5489 chrX 16074117 16074163 chrX 16074478 16074524 34 360 1.0 9.5 5.2 5.5 407 chrX 16074117 intergenic not near genes chrX 16074320 intergenic Tob - chrX 16074524 intergenic Tob - chrX_34_16070001 chrX_16070001 RAL-303_100b 5490 chrX 16080253 16080309 chrX 16080358 16080403 63 101 20.0 16.5 18.2 3.3 150 chrX 16080253 exon Tob - chrX 16080328 exon Tob - chrX 16080403 exon Tob - chrX_63_16080001 chrX_16080001 RAL-303_100b 5491 chrX 16100532 16100591 chrX 16100636 16100696 17 105 9.0 9.0 9.0 1.7 164 chrX 16100532 intron,intron CG42353 -,CG42354 - chrX 16100614 intron,intron CG42353 -,CG42354 - chrX 16100696 intron,intron CG42353 -,CG42354 - chrX_17_16100001 chrX_16100001 RAL-303_100b 5492 chrX 16222756 16222781 chrX 16231131 16231156 roo 13 8375 12.0 5.5 8.8 1.3 8400 chrX 16222756 intergenic not near genes chrX 16226956 intergenic not near genes chrX 16231156 intergenic not near genes chrX_13_16225001 chrX_16225001 RAL-303_100b 5493 chrX 16222782 16222805 chrX 16231126 16231180 roo 12 8372 7.5 5.5 6.5 1.6 8398 chrX 16222782 intergenic not near genes chrX 16226981 intergenic not near genes chrX 16231180 intergenic not near genes chrX_12_16225001 chrX_16225001 RAL-303_100b 5494 chrX 16295501 16295526 chrX 16295610 16295619 18 107 11.5 0.0 5.8 2.6 118 chrX 16295501 intron CG9911 - chrX 16295560 intron CG9911 - chrX 16295619 intron CG9911 - chrX_18_16295001 chrX_16295001 RAL-303_100b 5495 chrX 16329435 16329442 chrX 16329532 16329550 9 103 0.5 27.0 13.8 0.6 115 chrX 16329435 intron CG9919 - chrX 16329492 intron CG9919 - chrX 16329550 exon CG9919 - chrX_9_16325001 chrX_16325001 RAL-303_100b 5496 chrX 16329443 16329443 chrX 16329526 16329550 4 100 0.5 22.0 11.2 0.3 107 chrX 16329443 intron CG9919 - chrX 16329496 intron CG9919 - chrX 16329550 exon CG9919 - chrX_4_16325001 chrX_16325001 RAL-303_100b 5497 chrX 16329444 16329445 chrX 16329522 16329553 4 98 0.5 16.5 8.5 0.4 109 chrX 16329444 intron CG9919 - chrX 16329498 intron CG9919 - chrX 16329553 exon CG9919 - chrX_4_16325001 chrX_16325001 RAL-303_100b 5498 chrX 16340642 16340697 chrX 16349822 16349878 roo 24 9180 0.5 9.5 5.0 4.0 9236 chrX 16340642 intergenic Dsp1 + chrX 16345260 intergenic not near genes chrX 16349878 intergenic sl + chrX_24_16345001 chrX_16345001 RAL-303_100b 5499 chrX 16492625 16492676 chrX 16498222 16498268 mdg3 50 5600 14.0 14.5 14.2 3.3 5643 chrX 16492625 intron para - chrX 16495446 intron para - chrX 16498268 intron para - chrX_50_16495001 chrX_16495001 RAL-303_100b 5500 chrX 7978951 7978952 chrX 16525735 16525787 8 8546806 61.5 27.5 44.5 0.2 8546836 chrX 7978951 intron sn + chrX 12252369 intron Ten-a + chrX 16525787 intron para - chrX_8_12250001 chrX_12250001 RAL-303_100b 5501 chrX 16570846 16570899 chrX 16570951 16571004 35 104 14.5 13.5 14.0 2.3 158 chrX 16570846 intron CanA-14F - chrX 16570925 intron CanA-14F - chrX 16571004 intron CanA-14F - chrX_35_16570001 chrX_16570001 RAL-303_100b 5502 chrX 16623461 16623498 chrX 16623572 16623577 16 108 17.5 0.5 9.0 1.6 116 chrX 16623461 intergenic not near genes chrX 16623519 intergenic Rok - chrX 16623577 intergenic Rok - chrX_16_16620001 chrX_16620001 RAL-303_100b 5503 chrX 16650903 16650916 chrX 16651005 16651018 8 102 25.5 1.5 13.5 0.6 115 chrX 16650903 intergenic CG32573 +,CG42512 + chrX 16650960 intergenic CG32573 +,CG42512 + chrX 16651018 intergenic CG32573 +,CG42512 + chrX_8_16650001 chrX_16650001 RAL-303_100b 5504 chrX 16650917 16650943 chrX 16651004 16651025 16 96 15.0 1.5 8.2 1.7 108 chrX 16650917 intergenic CG32573 +,CG42512 + chrX 16650971 intergenic CG32573 +,CG42512 + chrX 16651025 intergenic CG32573 +,CG42512 + chrX_16_16650001 chrX_16650001 RAL-303_100b 5505 chrX 16689597 16689655 chrX 16689708 16689756 37 104 12.0 16.5 14.2 2.4 159 chrX 16689597 intron Sep4 - chrX 16689676 intron Sep4 - chrX 16689756 intron Sep4 - chrX_37_16685001 chrX_16685001 RAL-303_100b 5506 chrX 16690117 16690136 chrX 16690227 16690246 8 110 9.0 6.5 7.8 0.9 129 chrX 16690117 intron Sep4 - chrX 16690182 intron Sep4 - chrX 16690246 intron Sep4 - chrX_8_16690001 chrX_16690001 RAL-303_100b 5507 chrX 16690431 16690478 chrX 16690530 16690582 40 96 8.0 8.5 8.2 4.3 151 chrX 16690431 intron Sep4 - chrX 16690506 intron Sep4 - chrX 16690582 intron Sep4 - chrX_40_16690001 chrX_16690001 RAL-303_100b 5508 chrX 16764707 16764743 chrX 16764807 16764825 23 100 11.0 1.0 6.0 3.3 118 chrX 16764707 intron if - chrX 16764766 intron if - chrX 16764825 intron if - chrX_23_16760001 chrX_16760001 RAL-303_100b 5509 chrX 15785500 15785505 chrX 16786902 16786907 4 1001402 53.5 17.5 35.5 0.1 1001407 chrX 15785500 5` UTR Paf-AHalpha - chrX 16286204 intron CG32576 - chrX 16786907 5` UTR CG9609 - chrX_4_16285001 chrX_16285001 RAL-303_100b 5510 chrX 16936001 16936030 chrX 16936438 16936468 jockey 25 441 5.5 20.5 13.0 1.8 467 chrX 16936001 intron CG4928 + chrX 16936234 intron CG4928 + chrX 16936468 intron CG4928 + chrX_25_16935001 chrX_16935001 RAL-303_100b 5511 chrX 1053117 1053123 chrX 16983076 16983076 4 15929954 35.5 73.5 54.5 0.1 15929959 chrX 1053117 intron CR44779 + chrX 9018096 intron,intron rdgA +,CR43836 - chrX 16983076 intron CG45002 - chrX_4_9015001 chrX_9015001 RAL-303_100b 5512 chrX 16983076 16983076 chrX 19404963 19404965 10 2421888 72.5 32.0 52.2 0.2 2421889 chrX 16983076 intron CG45002 - chrX 18194020 intron Frq2 + chrX 19404965 intron kek5 + chrX_10_18190001 chrX_18190001 RAL-303_100b 5513 chrX 1053117 1053123 chrX 16983077 16983077 8 15929957 35.5 73.5 54.5 0.1 15929960 chrX 1053117 intron CR44779 + chrX 9018097 intron,intron rdgA +,CR43836 - chrX 16983077 intron CG45002 - chrX_8_9015001 chrX_9015001 RAL-303_100b 5514 chrX 16983077 16983077 chrX 19404963 19404965 9 2421887 72.0 32.0 52.0 0.2 2421888 chrX 16983077 intron CG45002 - chrX 18194021 intron Frq2 + chrX 19404965 intron kek5 + chrX_9_18190001 chrX_18190001 RAL-303_100b 5515 chrX 17057918 17057945 chrX 17058184 17058211 pogo 4 266 9.5 14.0 11.8 0.3 293 chrX 17057918 intron CG45002 - chrX 17058064 intron CG45002 - chrX 17058211 intron CG45002 - chrX_4_17055001 chrX_17055001 RAL-303_100b 5516 chrX 17057950 17057965 chrX 17058216 17058231 pogo 10 266 3.0 17.5 10.2 0.9 281 chrX 17057950 intron CG45002 - chrX 17058090 intron CG45002 - chrX 17058231 intron CG45002 - chrX_10_17055001 chrX_17055001 RAL-303_100b 5517 chrX 17063153 17063208 chrX 17063265 17063320 48 110 9.5 15.0 12.2 3.6 167 chrX 17063153 intron CG45002 - chrX 17063236 intron CG45002 - chrX 17063320 intron CG45002 - chrX_48_17060001 chrX_17060001 RAL-303_100b 5518 chrX 17088189 17088201 chrX 17088807 17088819 16 618 7.5 18.5 13.0 1.1 630 chrX 17088189 intergenic not near genes chrX 17088504 intergenic not near genes chrX 17088819 intergenic not near genes chrX_16_17085001 chrX_17085001 RAL-303_100b 5519 chrX 17112247 17112252 chrX 17112354 17112359 10 107 0.0 28.5 14.2 0.7 112 chrX 17112247 intron CG5004 + chrX 17112303 intron CG5004 + chrX 17112359 intron CG5004 + chrX_10_17110001 chrX_17110001 RAL-303_100b 5520 chrX 17122628 17122672 chrX 17122738 17122788 33 114 12.5 17.0 14.8 2.1 160 chrX 17122628 intron CG5004 + chrX 17122708 intron CG5004 + chrX 17122788 intron CG5004 + chrX_33_17120001 chrX_17120001 RAL-303_100b 5521 chrX 17195181 17195236 chrX 17200292 17200328 flea 21 5108 14.0 14.0 14.0 1.4 5147 chrX 17195181 3` UTR baz + chrX 17197754 3` UTR baz + chrX 17200328 3` UTR baz + chrX_21_17195001 chrX_17195001 RAL-303_100b 5522 chrX 17205823 17205859 chrX 17205938 17205974 29 113 10.5 19.5 15.0 1.8 151 chrX 17205823 intergenic not near genes chrX 17205898 intergenic not near genes chrX 17205974 intergenic CG32564 + chrX_29_17205001 chrX_17205001 RAL-303_100b 5523 chrX 17211442 17211485 chrX 17212125 17212168 INE-1 38 682 54.5 64.5 59.5 0.6 726 chrX 17211442 intergenic not near genes chrX 17211805 intergenic not near genes chrX 17212168 intergenic CG18258 + chrX_38_17210001 chrX_17210001 RAL-303_100b 5524 chrX 17237511 17237532 chrX 17237620 17237636 14 108 18.0 10.5 14.2 0.9 125 chrX 17237511 intron f + chrX 17237574 intron f + chrX 17237636 intron f + chrX_14_17235001 chrX_17235001 RAL-303_100b 5525 chrX 17273831 17273841 chrX 17273947 17273957 10 115 8.0 7.0 7.5 1.2 126 chrX 17273831 exon f + chrX 17273894 intron f + chrX 17273957 intron f + chrX_10_17270001 chrX_17270001 RAL-303_100b 5526 chrX 17303582 17303604 chrX 17303683 17303705 16 99 14.0 14.5 14.2 1.1 123 chrX 17303582 intron CG5445 + chrX 17303644 intron CG5445 + chrX 17303705 intron CG5445 + chrX_16_17300001 chrX_17300001 RAL-303_100b 5527 chrX 17352571 17352621 chrX 17352690 17352749 36 124 0.0 8.5 4.2 6.9 178 chrX 17352571 intergenic not near genes chrX 17352660 intergenic not near genes chrX 17352749 intergenic not near genes chrX_36_17350001 chrX_17350001 RAL-303_100b 5528 chrX 17357512 17357535 chrX 17357631 17357654 18 118 13.0 7.5 10.2 1.6 142 chrX 17357512 intergenic not near genes chrX 17357583 intergenic not near genes chrX 17357654 intergenic not near genes chrX_18_17355001 chrX_17355001 RAL-303_100b 5529 chrX 17431329 17431341 chrX 17431695 17431707 jockey 7 366 33.5 16.5 25.0 0.3 378 chrX 17431329 intron CG12994 - chrX 17431518 intron CG12994 - chrX 17431707 intron CG12994 - chrX_7_17430001 chrX_17430001 RAL-303_100b 5530 chrX 17476438 17476447 chrX 17476539 17476549 7 101 38.0 7.0 22.5 0.3 111 chrX 17476438 intron CG43658 - chrX 17476494 intron CG43658 - chrX 17476549 intron CG43658 - chrX_7_17475001 chrX_17475001 RAL-303_100b 5531 chrX 17476449 17476466 chrX 17476538 17476568 14 94 26.0 8.0 17.0 0.8 119 chrX 17476449 intron CG43658 - chrX 17476508 intron CG43658 - chrX 17476568 intron CG43658 - chrX_14_17475001 chrX_17475001 RAL-303_100b 5532 chrX 17476467 17476486 chrX 17476535 17476545 19 83 18.0 7.0 12.5 1.4 78 chrX 17476467 intron CG43658 - chrX 17476506 intron CG43658 - chrX 17476545 intron CG43658 - chrX_19_17475001 chrX_17475001 RAL-303_100b 5533 chrX 17556921 17556933 chrX 17557445 17557456 mdg1 4 524 35.5 12.0 23.8 0.2 535 chrX 17556921 intron CG43658 - chrX 17557188 intron CG43658 - chrX 17557456 intron CG43658 - chrX_4_17555001 chrX_17555001 RAL-303_100b 5534 chrX 8787601 8787637 chrX 17634277 17634278 4 8846652 40.0 21.5 30.8 0.1 8846677 chrX 8787601 intron Lim1 - chrX 13210940 intron sno - chrX 17634278 3` UTR CG8289 - chrX_4_13210001 chrX_13210001 RAL-303_100b 5535 chrX 17680877 17680884 chrX 17680974 17680986 8 101 29.5 15.0 22.2 0.3 109 chrX 17680877 intron chas - chrX 17680932 intron chas - chrX 17680986 intron chas - chrX_8_17680001 chrX_17680001 RAL-303_100b 5536 chrX 17680886 17680925 chrX 17680968 17681001 26 95 6.5 12.5 9.5 2.5 115 chrX 17680886 intron chas - chrX 17680944 intron chas - chrX 17681001 intron chas - chrX_26_17680001 chrX_17680001 RAL-303_100b 5537 chrX 17685433 17685473 chrX 17685541 17685581 17 105 8.0 8.0 8.0 1.9 148 chrX 17685433 intron chas - chrX 17685507 intron chas - chrX 17685581 intron chas - chrX_17_17685001 chrX_17685001 RAL-303_100b 5538 chrX 17711346 17711373 chrX 17711457 17711484 20 109 12.5 6.0 9.2 2.0 138 chrX 17711346 intron CG42684 + chrX 17711415 intron CG42684 + chrX 17711484 intron CG42684 + chrX_20_17710001 chrX_17710001 RAL-303_100b 5539 chrX 17716562 17716601 chrX 17716674 17716713 29 108 19.5 15.5 17.5 1.6 151 chrX 17716562 intron CG42684 + chrX 17716638 intron CG42684 + chrX 17716713 intron CG42684 + chrX_29_17715001 chrX_17715001 RAL-303_100b 5540 chrX 17740349 17740362 chrX 17740451 17740455 5 99 25.0 10.0 17.5 0.3 106 chrX 17740349 intron CG42684 + chrX 17740402 intron CG42684 + chrX 17740455 intron CG42684 + chrX_5_17740001 chrX_17740001 RAL-303_100b 5541 chrX 17740363 17740406 chrX 17740449 17740477 21 89 8.5 9.5 9.0 2.1 114 chrX 17740363 intron CG42684 + chrX 17740420 intron CG42684 + chrX 17740477 intron CG42684 + chrX_21_17740001 chrX_17740001 RAL-303_100b 5542 chrX 17766331 17766378 chrX 17766454 17766470 29 117 12.5 9.0 10.8 2.5 139 chrX 17766331 intergenic not near genes chrX 17766400 intergenic not near genes chrX 17766470 intergenic not near genes chrX_29_17765001 chrX_17765001 RAL-303_100b 5543 chrX 17792937 17792979 chrX 17796251 17796302 flea 20 3319 15.0 15.5 15.2 1.2 3365 chrX 17792937 intron OdsH + chrX 17794620 intron OdsH + chrX 17796302 intron OdsH + chrX_20_17790001 chrX_17790001 RAL-303_100b 5544 chrX 17854891 17854898 chrX 17854999 17855006 5 108 23.0 15.5 19.2 0.2 115 chrX 17854891 intron CG32557 - chrX 17854948 intron CG32557 - chrX 17855006 intron CG32557 - chrX_5_17850001 chrX_17850001 RAL-303_100b 5545 chrX 17854903 17854935 chrX 17854998 17855043 34 107 11.5 15.0 13.2 2.4 140 chrX 17854903 intron CG32557 - chrX 17854973 intron CG32557 - chrX 17855043 intron CG32557 - chrX_34_17850001 chrX_17850001 RAL-303_100b 5546 chrX 17867025 17867046 chrX 17867126 17867147 4 101 22.5 17.5 20.0 0.2 122 chrX 17867025 intron mnb - chrX 17867086 intron mnb - chrX 17867147 intron mnb - chrX_4_17865001 chrX_17865001 RAL-303_100b 5547 chrX 17867048 17867076 chrX 17867124 17867141 11 95 18.0 16.5 17.2 0.6 93 chrX 17867048 intron mnb - chrX 17867094 intron mnb - chrX 17867141 intron mnb - chrX_11_17865001 chrX_17865001 RAL-303_100b 5548 chrX 17911828 17911878 chrX 17911941 17911991 32 111 2.0 11.0 6.5 4.3 163 chrX 17911828 intron CG6847 + chrX 17911910 intron CG6847 + chrX 17911991 intron CG6847 + chrX_32_17910001 chrX_17910001 RAL-303_100b 5549 chrX 18029166 18029190 chrX 18029272 18029296 15 105 4.0 0.0 2.0 5.0 130 chrX 18029166 intron Sh - chrX 18029231 intron Sh - chrX 18029296 intron Sh - chrX_15_18025001 chrX_18025001 RAL-303_100b 5550 chrX 18122795 18122851 chrX 18122896 18122952 46 98 14.0 18.5 16.2 2.7 157 chrX 18122795 5` UTR CR45606 + chrX 18122874 5` UTR CR45606 + chrX 18122952 intergenic CR45606 + chrX_46_18120001 chrX_18120001 RAL-303_100b 5551 chrX 18141061 18141101 chrX 18141162 18141201 28 101 4.5 9.0 6.8 3.6 140 chrX 18141061 intergenic not near genes chrX 18141131 intergenic not near genes chrX 18141201 intergenic not near genes chrX_28_18140001 chrX_18140001 RAL-303_100b 5552 chrX 18148614 18148617 chrX 18148742 18148745 4 128 10.0 6.0 8.0 0.4 131 chrX 18148614 intergenic not near genes chrX 18148680 intergenic not near genes chrX 18148745 intergenic not near genes chrX_4_18145001 chrX_18145001 RAL-303_100b 5553 chrX 18148618 18148625 chrX 18148740 18148753 8 126 9.0 4.5 6.8 1.0 135 chrX 18148618 intergenic not near genes chrX 18148686 intergenic not near genes chrX 18148753 intergenic not near genes chrX_8_18145001 chrX_18145001 RAL-303_100b 5554 chrX 18175461 18175479 chrX 18175541 18175589 4 101 1.5 8.0 4.8 0.7 128 chrX 18175461 intergenic not near genes chrX 18175525 intergenic not near genes chrX 18175589 intergenic not near genes chrX_4_18175001 chrX_18175001 RAL-303_100b 5555 chrX 18194042 18194085 chrX 18194602 18194645 BS 29 558 18.0 13.5 15.8 1.7 603 chrX 18194042 intron Frq2 + chrX 18194344 intron Frq2 + chrX 18194645 intron Frq2 + chrX_29_18190001 chrX_18190001 RAL-303_100b 5556 chrX 18194086 18194105 chrX 18194600 18194617 BS 16 547 12.0 11.5 11.8 1.2 531 chrX 18194086 intron Frq2 + chrX 18194352 intron Frq2 + chrX 18194617 intron Frq2 + chrX_16_18190001 chrX_18190001 RAL-303_100b 5557 chrX 18218023 18218065 chrX 18218154 18218207 24 142 9.5 14.5 12.0 1.8 184 chrX 18218023 intron CG33639 - chrX 18218115 intron CG33639 - chrX 18218207 intron CG33639 - chrX_24_18215001 chrX_18215001 RAL-303_100b 5558 chrX 18320482 18320487 chrX 18320639 18320644 10 157 0.0 10.5 5.2 1.6 162 chrX 18320482 intron CG6023 - chrX 18320563 intron CG6023 - chrX 18320644 intron CG6023 - chrX_10_18320001 chrX_18320001 RAL-303_100b 5559 chrX 18320492 18320502 chrX 18320629 18320659 8 152 0.0 7.5 3.8 1.7 167 chrX 18320492 intron CG6023 - chrX 18320576 intron CG6023 - chrX 18320659 intron CG6023 - chrX_8_18320001 chrX_18320001 RAL-303_100b 5560 chrX 18427357 18427407 chrX 18427793 18427843 38 434 12.5 8.5 10.5 3.3 486 chrX 18427357 intergenic CG42323 + chrX 18427600 intergenic not near genes chrX 18427843 intergenic not near genes chrX_38_18425001 chrX_18425001 RAL-303_100b 5561 chrX 18429472 18429516 chrX 18434808 18434846 Transpac 27 5333 16.5 15.0 15.8 1.6 5374 chrX 18429472 intergenic not near genes chrX 18432159 intergenic not near genes chrX 18434846 intergenic not near genes chrX_27_18430001 chrX_18430001 RAL-303_100b 5562 chrX 18429517 18429519 chrX 18434807 18434855 Transpac 5 5327 16.0 15.0 15.5 0.3 5338 chrX 18429517 intergenic not near genes chrX 18432186 intergenic not near genes chrX 18434855 intergenic not near genes chrX_5_18430001 chrX_18430001 RAL-303_100b 5563 chrX 18440987 18441018 chrX 18441105 18441113 7 115 17.0 12.0 14.5 0.5 126 chrX 18440987 intergenic CG32548 - chrX 18441050 intergenic CG32548 - chrX 18441113 intergenic not near genes chrX_7_18440001 chrX_18440001 RAL-303_100b 5564 chrX 18453579 18453593 chrX 18453680 18453683 6 97 42.0 20.5 31.2 0.2 104 chrX 18453579 intron CG32547 - chrX 18453631 intron CG32547 - chrX 18453683 intron CG32547 - chrX_6_18450001 chrX_18450001 RAL-303_100b 5565 chrX 18453594 18453618 chrX 18453678 18453713 25 91 27.5 20.0 23.8 1.0 119 chrX 18453594 intron CG32547 - chrX 18453654 intron CG32547 - chrX 18453713 intron CG32547 - chrX_25_18450001 chrX_18450001 RAL-303_100b 5566 chrX 18474288 18474325 chrX 18474396 18474433 29 103 11.0 1.0 6.0 4.1 145 chrX 18474288 intron CG32547 - chrX 18474360 intron CG32547 - chrX 18474433 intron CG32547 - chrX_29_18470001 chrX_18470001 RAL-303_100b 5567 chrX 18490020 18490056 chrX 18490200 18490235 24 178 12.5 10.5 11.5 1.9 215 chrX 18490020 intergenic CG15046 - chrX 18490128 intergenic not near genes chrX 18490235 intergenic not near genes chrX_24_18490001 chrX_18490001 RAL-303_100b 5568 chrX 18555352 18555411 chrX 18556898 18556958 transib2 37 1540 6.0 13.5 9.8 3.4 1606 chrX 18555352 intron Bx + chrX 18556155 intron Bx + chrX 18556958 intron Bx + chrX_37_18555001 chrX_18555001 RAL-303_100b 5569 chrX 12946233 12946235 chrX 18572525 18572527 12 5626291 58.0 53.0 55.5 0.2 5626294 chrX 12946233 3` UTR fne + chrX 15759380 intron Graf - chrX 18572527 intergenic not near genes chrX_12_15755001 chrX_15755001 RAL-303_100b 5570 chrX 18574779 18574793 chrX 18574884 18574898 9 105 4.5 6.5 5.5 1.4 119 chrX 18574779 intergenic not near genes chrX 18574838 intergenic not near genes chrX 18574898 intergenic not near genes chrX_9_18570001 chrX_18570001 RAL-303_100b 5571 chrX 18574794 18574826 chrX 18574883 18574931 19 102 4.0 6.5 5.2 3.1 137 chrX 18574794 intergenic not near genes chrX 18574862 intergenic not near genes chrX 18574931 intergenic not near genes chrX_19_18570001 chrX_18570001 RAL-303_100b 5572 chrX 18645005 18645048 chrX 18645111 18645157 56 120 9.0 9.0 9.0 5.6 152 chrX 18645005 intron Rip11 - chrX 18645081 intron Rip11 - chrX 18645157 intron Rip11 - chrX_56_18645001 chrX_18645001 RAL-303_100b 5573 chrX 18698822 18698878 chrX 18698964 18699020 40 141 11.0 11.0 11.0 3.3 198 chrX 18698822 intergenic not near genes chrX 18698921 intergenic not near genes chrX 18699020 intergenic not near genes chrX_40_18695001 chrX_18695001 RAL-303_100b 5574 chrX 18817905 18817931 chrX 18818018 18818044 22 113 21.0 14.0 17.5 1.2 139 chrX 18817905 intron CG42450 + chrX 18817974 intron CG42450 + chrX 18818044 intron CG42450 + chrX_22_18815001 chrX_18815001 RAL-303_100b 5575 chrX 18817933 18817954 chrX 18818014 18818067 21 107 13.5 10.0 11.8 1.6 134 chrX 18817933 intron CG42450 + chrX 18818000 intron CG42450 + chrX 18818067 intron CG42450 + chrX_21_18815001 chrX_18815001 RAL-303_100b 5576 chrX 18817955 18817958 chrX 18818013 18818071 4 99 13.5 9.5 11.5 0.3 116 chrX 18817955 intron CG42450 + chrX 18818013 intron CG42450 + chrX 18818071 intron CG42450 + chrX_4_18815001 chrX_18815001 RAL-303_100b 5577 chrX 18896491 18896549 chrX 18896627 18896685 43 134 7.5 10.5 9.0 4.3 194 chrX 18896491 3` UTR CG7349 + chrX 18896588 intergenic CG7349 + chrX 18896685 intergenic CG7349 + chrX_43_18895001 chrX_18895001 RAL-303_100b 5578 chrX 18896886 18896907 chrX 18896988 18896999 18 99 24.5 13.5 19.0 0.9 113 chrX 18896886 intergenic CG7349 + chrX 18896942 intergenic CG7349 + chrX 18896999 intergenic CG7349 + chrX_18_18895001 chrX_18895001 RAL-303_100b 5579 chrX 18896909 18896936 chrX 18896986 18897028 33 98 11.5 12.5 12.0 2.5 119 chrX 18896909 intergenic CG7349 + chrX 18896968 intergenic CG7349 + chrX 18897028 intergenic CG7349 + chrX_33_18895001 chrX_18895001 RAL-303_100b 5580 chrX 18957045 18957099 chrX 18965733 18965787 roo 15 8683 11.0 11.0 11.0 1.2 8742 chrX 18957045 intron CG43759 + chrX 18961416 intron CG43759 + chrX 18965787 intron CG43759 + chrX_15_18960001 chrX_18960001 RAL-303_100b 5581 chrX 19019937 19019945 chrX 19020090 19020098 4 153 21.5 12.5 17.0 0.2 161 chrX 19019937 intron CG43759 + chrX 19020018 intron CG43759 + chrX 19020098 intron CG43759 + chrX_4_19020001 chrX_19020001 RAL-303_100b 5582 chrX 19019947 19019968 chrX 19020100 19020120 9 151 12.5 15.0 13.8 0.6 173 chrX 19019947 intron CG43759 + chrX 19020034 intron CG43759 + chrX 19020120 intron CG43759 + chrX_9_19020001 chrX_19020001 RAL-303_100b 5583 chrX 19060388 19060439 chrX 19065197 19065248 Doc 25 4808 8.5 22.0 15.2 1.5 4860 chrX 19060388 intron CG14190 + chrX 19062818 intron CG14190 + chrX 19065248 intron CG14190 + chrX_25_19060001 chrX_19060001 RAL-303_100b 5584 chrX 19098748 19098781 chrX 19098851 19098884 30 103 9.5 14.5 12.0 2.3 136 chrX 19098748 intergenic not near genes chrX 19098816 intergenic not near genes chrX 19098884 intergenic not near genes chrX_30_19095001 chrX_19095001 RAL-303_100b 5585 chrX 19106803 19106838 chrX 19106898 19106919 20 97 20.5 8.5 14.5 1.3 116 chrX 19106803 intergenic not near genes chrX 19106861 intergenic not near genes chrX 19106919 intergenic not near genes chrX_20_19105001 chrX_19105001 RAL-303_100b 5586 chrX 19119674 19119717 chrX 19119785 19119828 11 111 6.0 2.0 4.0 2.2 154 chrX 19119674 intergenic not near genes chrX 19119751 intergenic not near genes chrX 19119828 intergenic not near genes chrX_11_19115001 chrX_19115001 RAL-303_100b 5587 chrX 19136527 19136582 chrX 19143472 19143525 412 27 6942 17.5 3.0 10.2 2.4 6998 chrX 19136527 intergenic not near genes chrX 19140026 intergenic not near genes chrX 19143525 3` UTR RhoGAP18B - chrX_27_19140001 chrX_19140001 RAL-303_100b 5588 chrX 19170569 19170587 chrX 19170671 19170689 21 101 25.0 26.5 25.8 0.8 120 chrX 19170569 5` UTR Inx5 - chrX 19170629 5` UTR Inx5 - chrX 19170689 5` UTR Inx5 - chrX_21_19170001 chrX_19170001 RAL-303_100b 5589 chrX 19170588 19170602 chrX 19170670 19170704 15 97 19.5 25.5 22.5 0.6 116 chrX 19170588 5` UTR Inx5 - chrX 19170646 5` UTR Inx5 - chrX 19170704 5` UTR Inx5 - chrX_15_19170001 chrX_19170001 RAL-303_100b 5590 chrX 19309626 19309681 chrX 19309731 19309786 29 99 9.0 17.0 13.0 2.1 160 chrX 19309626 intergenic not near genes chrX 19309706 intergenic not near genes chrX 19309786 intergenic not near genes chrX_29_19305001 chrX_19305001 RAL-303_100b 5591 chrX 19352456 19352505 chrX 19370490 19370536 21 18030 57.5 15.0 36.2 0.6 18080 chrX 19352456 intergenic not near genes chrX 19361496 intron kek5 + chrX 19370536 intron kek5 + chrX_21_19360001 chrX_19360001 RAL-303_100b 5592 chrX 19380136 19380145 chrX 19380402 19380404 pogo 10 265 38.0 13.5 25.8 0.4 268 chrX 19380136 intron kek5 + chrX 19380270 intron kek5 + chrX 19380404 intron kek5 + chrX_10_19380001 chrX_19380001 RAL-303_100b 5593 chrX 19380146 19380188 chrX 19380401 19380402 pogo 38 263 20.5 13.0 16.8 2.1 256 chrX 19380146 intron kek5 + chrX 19380274 intron kek5 + chrX 19380402 intron kek5 + chrX_38_19380001 chrX_19380001 RAL-303_100b 5594 chrX 19404562 19404569 chrX 19404734 19404747 5 174 7.5 0.0 3.8 1.0 185 chrX 19404562 intron kek5 + chrX 19404654 intron kek5 + chrX 19404747 intron kek5 + chrX_5_19400001 chrX_19400001 RAL-303_100b 5595 chrX 16983076 16983077 chrX 19404964 19404965 9 2421888 72.0 32.0 52.0 0.2 2421889 chrX 16983076 intron CG45002 - chrX 18194020 intron Frq2 + chrX 19404965 intron kek5 + chrX_9_18190001 chrX_18190001 RAL-303_100b 5596 chrX 19472109 19472135 chrX 19472704 19472729 jockey 13 593 18.5 12.5 15.5 0.8 620 chrX 19472109 intergenic kek5 + chrX 19472419 intergenic not near genes chrX 19472729 intergenic not near genes chrX_13_19470001 chrX_19470001 RAL-303_100b 5597 chrX 19472138 19472157 chrX 19472689 19472695 jockey 12 572 9.5 8.0 8.8 1.2 557 chrX 19472138 intergenic kek5 + chrX 19472416 intergenic not near genes chrX 19472695 intergenic not near genes chrX_12_19470001 chrX_19470001 RAL-303_100b 5598 chrX 19500693 19500751 chrX 19500804 19500863 34 110 7.0 9.0 8.0 3.8 170 chrX 19500693 intron,intron CG14200 +,Pfrx + chrX 19500778 intron,intron CG14200 +,Pfrx + chrX 19500863 intron,intron CG14200 +,Pfrx + chrX_34_19500001 chrX_19500001 RAL-303_100b 5599 chrX 19532847 19532864 chrX 19532949 19532956 11 97 15.5 18.0 16.8 0.6 109 chrX 19532847 3` UTR CG32532 - chrX 19532902 3` UTR CG32532 - chrX 19532956 3` UTR CG32532 - chrX_11_19530001 chrX_19530001 RAL-303_100b 5600 chrX 19535743 19535753 chrX 19535843 19535844 7 98 37.0 22.0 29.5 0.2 101 chrX 19535743 intron CG32532 - chrX 19535794 intron CG32532 - chrX 19535844 intron CG32532 - chrX_7_19535001 chrX_19535001 RAL-303_100b 5601 chrX 19535754 19535767 chrX 19535840 19535868 18 93 32.0 23.0 27.5 0.6 114 chrX 19535754 intron CG32532 - chrX 19535811 intron CG32532 - chrX 19535868 intron CG32532 - chrX_18_19535001 chrX_19535001 RAL-303_100b 5602 chrX 19541407 19541448 chrX 19541512 19541553 29 104 6.5 12.0 9.2 2.8 146 chrX 19541407 intron CG32532 - chrX 19541480 intron CG32532 - chrX 19541553 intron CG32532 - chrX_29_19540001 chrX_19540001 RAL-303_100b 5603 chrX 19542108 19542162 chrX 19542231 19542285 33 122 9.0 5.5 7.2 4.0 177 chrX 19542108 intron CG32532 - chrX 19542196 intron CG32532 - chrX 19542285 intron CG32532 - chrX_33_19540001 chrX_19540001 RAL-303_100b 5604 chrX 19593922 19593976 chrX 19594032 19594086 45 109 12.0 14.0 13.0 3.2 164 chrX 19593922 exon CG14205 + chrX 19594004 intron CG14205 + chrX 19594086 exon CG14205 + chrX_45_19590001 chrX_19590001 RAL-303_100b 5605 chrX 19585975 19585977 chrX 19594832 19594879 6 8864 38.5 53.0 45.8 0.1 8904 chrX 19585975 exon CG14204 + chrX 19590427 intergenic CG14219 - chrX 19594879 exon CG14205 + chrX_6_19590001 chrX_19590001 RAL-303_100b 5606 chrX 19595706 19595742 chrX 19595820 19595856 17 112 4.0 13.0 8.5 1.8 150 chrX 19595706 intergenic CG14205 + chrX 19595781 intergenic CG14205 + chrX 19595856 intergenic CG14205 + chrX_17_19595001 chrX_19595001 RAL-303_100b 5607 chrX 19639013 19639035 chrX 19639183 19639196 8 173 23.0 22.5 22.8 0.3 183 chrX 19639013 5` UTR Rcd-1 + chrX 19639104 5` UTR Rcd-1 + chrX 19639196 5` UTR Rcd-1 + chrX_8_19635001 chrX_19635001 RAL-303_100b 5608 chrX 19662006 19662057 chrX 19662254 19662283 34 243 7.5 10.5 9.0 3.4 277 chrX 19662006 intron CG14223 - chrX 19662144 intron CG14223 - chrX 19662283 intron CG14223 - chrX_34_19660001 chrX_19660001 RAL-303_100b 5609 chrX 19744606 19744660 chrX 19744752 19744800 27 137 62.5 68.5 65.5 0.4 194 chrX 19744606 5` UTR,exon CG33932 +,Rpp20 + chrX 19744703 intron,intron CG33932 +,Rpp20 + chrX 19744800 5` UTR,exon CG33932 +,Rpp20 + chrX_27_19740001 chrX_19740001 RAL-303_100b 5610 chrX 19756104 19756117 chrX 19756214 19756228 14 111 24.5 4.0 14.2 0.9 124 chrX 19756104 intron Pmp70 + chrX 19756166 intron Pmp70 + chrX 19756228 intron Pmp70 + chrX_14_19755001 chrX_19755001 RAL-303_100b 5611 chrX 19762563 19762601 chrX 19762668 19762700 15 105 17.0 5.0 11.0 1.2 137 chrX 19762563 5` UTR CG12702 - chrX 19762632 5` UTR CG12702 - chrX 19762700 5` UTR CG12702 - chrX_15_19760001 chrX_19760001 RAL-303_100b 5612 chrX 19769488 19769515 chrX 19769588 19769601 18 100 21.5 15.0 18.2 0.9 113 chrX 19769488 exon vfl - chrX 19769544 intron vfl - chrX 19769601 intron vfl - chrX_18_19765001 chrX_19765001 RAL-303_100b 5613 chrX 19797329 19797340 chrX 19804662 19804678 Stalker4 7 7337 33.5 15.0 24.2 0.3 7349 chrX 19797329 intergenic not near genes chrX 19801004 intergenic not near genes chrX 19804678 intergenic not near genes chrX_7_19800001 chrX_19800001 RAL-303_100b 5614 chrX 19813230 19813320 chrX 19816538 19816613 Gypsy12A_LTR 7 3296 14.0 69.0 41.5 0.2 3383 chrX 19813230 exon skpD + chrX 19814922 intergenic not near genes chrX 19816613 exon skpC + chrX_7_19810001 chrX_19810001 RAL-303_100b 5615 chrX 19881431 19881436 chrX 19881537 19881542 7 105 29.0 10.0 19.5 0.3 111 chrX 19881431 intron Hers + chrX 19881486 intron Hers + chrX 19881542 intron Hers + chrX_7_19880001 chrX_19880001 RAL-303_100b 5616 chrX 19881439 19881483 chrX 19881535 19881579 33 102 12.5 8.5 10.5 2.9 140 chrX 19881439 intron Hers + chrX 19881509 intron Hers + chrX 19881579 intron Hers + chrX_33_19880001 chrX_19880001 RAL-303_100b 5617 chrX 19883741 19883798 chrX 19883851 19883908 50 107 8.5 11.0 9.8 4.6 167 chrX 19883741 intron Hers + chrX 19883824 intron Hers + chrX 19883908 intron Hers + chrX_50_19880001 chrX_19880001 RAL-303_100b 5618 chrX 19897361 19897415 chrX 19897463 19897517 52 101 16.0 17.0 16.5 3.0 156 chrX 19897361 intron Hers + chrX 19897439 intron Hers + chrX 19897517 intron Hers + chrX_52_19895001 chrX_19895001 RAL-303_100b 5619 chrX 19971772 19971791 chrX 19971952 19971971 19 180 21.5 15.0 18.2 1.0 199 chrX 19971772 intergenic not near genes chrX 19971872 intergenic not near genes chrX 19971971 intergenic not near genes chrX_19_19970001 chrX_19970001 RAL-303_100b 5620 chrX 19971792 19971826 chrX 19971951 19972005 30 177 8.0 15.0 11.5 2.4 213 chrX 19971792 intergenic not near genes chrX 19971898 intergenic not near genes chrX 19972005 intergenic not near genes chrX_30_19970001 chrX_19970001 RAL-303_100b 5621 chrX 19983848 19983898 chrX 19983945 19984003 39 103 1.0 5.5 3.2 9.3 155 chrX 19983848 intergenic not near genes chrX 19983926 intergenic not near genes chrX 19984003 intergenic not near genes chrX_39_19980001 chrX_19980001 RAL-303_100b 5622 chrX 19992394 19992407 chrX 19992495 19992508 7 100 31.0 23.0 27.0 0.2 114 chrX 19992394 intergenic not near genes chrX 19992451 intergenic not near genes chrX 19992508 intergenic not near genes chrX_7_19990001 chrX_19990001 RAL-303_100b 5623 chrX 19992408 19992432 chrX 19992493 19992505 17 94 19.5 23.0 21.2 0.8 97 chrX 19992408 intergenic not near genes chrX 19992456 intergenic not near genes chrX 19992505 intergenic not near genes chrX_17_19990001 chrX_19990001 RAL-303_100b 5624 chrX 19993444 19993446 chrX 19993549 19993551 5 105 14.0 8.0 11.0 0.4 107 chrX 19993444 intergenic not near genes chrX 19993498 intergenic not near genes chrX 19993551 intergenic not near genes chrX_5_19990001 chrX_19990001 RAL-303_100b 5625 chrX 20007961 20007975 chrX 20008084 20008098 8 123 29.5 0.0 14.8 0.5 137 chrX 20007961 intron Dop2R - chrX 20008030 intron Dop2R - chrX 20008098 intron Dop2R - chrX_8_20005001 chrX_20005001 RAL-303_100b 5626 chrX 20041505 20041562 chrX 20041610 20041667 45 105 12.5 7.5 10.0 4.1 162 chrX 20041505 intron Dop2R - chrX 20041586 intron Dop2R - chrX 20041667 intron Dop2R - chrX_45_20040001 chrX_20040001 RAL-303_100b 5627 chrX 20057102 20057166 chrX 20057210 20057272 19 91 8.0 8.0 8.0 2.1 170 chrX 20057102 intron Dop2R - chrX 20057187 intron Dop2R - chrX 20057272 intron Dop2R - chrX_19_20055001 chrX_20055001 RAL-303_100b 5628 chrX 20086434 20086451 chrX 20086560 20086577 11 124 25.0 14.5 19.8 0.5 143 chrX 20086434 intergenic not near genes chrX 20086506 intergenic not near genes chrX 20086577 intergenic not near genes chrX_11_20085001 chrX_20085001 RAL-303_100b 5629 chrX 20086454 20086475 chrX 20086555 20086601 25 122 15.0 12.0 13.5 1.7 147 chrX 20086454 intergenic not near genes chrX 20086528 intergenic not near genes chrX 20086601 intergenic not near genes chrX_25_20085001 chrX_20085001 RAL-303_100b 5630 chrX 20090580 20090611 chrX 20090682 20090715 10 102 13.0 25.5 19.2 0.5 135 chrX 20090580 intergenic CR45628 + chrX 20090648 intergenic CR45628 + chrX 20090715 5` UTR CR45628 + chrX_10_20090001 chrX_20090001 RAL-303_100b 5631 chrX 20103930 20103991 chrX 20104045 20104106 45 112 9.5 11.0 10.2 4.0 176 chrX 20103930 intergenic not near genes chrX 20104018 intergenic not near genes chrX 20104106 intergenic not near genes chrX_45_20100001 chrX_20100001 RAL-303_100b 5632 chrX 20105199 20105242 chrX 20105292 20105332 8 96 106.5 106.5 106.5 0.1 133 chrX 20105199 intergenic not near genes chrX 20105266 intergenic not near genes chrX 20105332 intergenic not near genes chrX_8_20105001 chrX_20105001 RAL-303_100b 5633 chrX 20125378 20125389 chrX 20125485 20125496 4 107 0.5 15.0 7.8 0.5 118 chrX 20125378 intergenic CG34331 + chrX 20125437 intergenic CG34331 + chrX 20125496 intergenic CG34331 + chrX_4_20125001 chrX_20125001 RAL-303_100b 5634 chrX 20132286 20132308 chrX 20132394 20132416 9 104 24.5 15.5 20.0 0.4 130 chrX 20132286 intergenic not near genes chrX 20132351 intergenic not near genes chrX 20132416 intergenic not near genes chrX_9_20130001 chrX_20130001 RAL-303_100b 5635 chrX 20271477 20271526 chrX 20271594 20271633 13 116 6.0 0.0 3.0 3.2 156 chrX 20271477 intergenic not near genes chrX 20271555 intergenic not near genes chrX 20271633 intergenic not near genes chrX_13_20270001 chrX_20270001 RAL-303_100b 5636 chrX 20312855 20312909 chrX 20312958 20313012 38 100 13.0 13.0 13.0 2.7 157 chrX 20312855 intron CG1504 - chrX 20312934 intron CG1504 - chrX 20313012 intron CG1504 - chrX_38_20310001 chrX_20310001 RAL-303_100b 5637 chrX 20320276 20320308 chrX 20320378 20320410 34 97 13.0 15.5 14.2 2.2 134 chrX 20320276 intron CG1504 - chrX 20320343 intron CG1504 - chrX 20320410 intron CG1504 - chrX_34_20320001 chrX_20320001 RAL-303_100b 5638 chrX 20357330 20357384 chrX 20357432 20357486 48 99 17.5 12.5 15.0 3.0 156 chrX 20357330 intergenic not near genes chrX 20357408 intergenic not near genes chrX 20357486 intergenic not near genes chrX_48_20355001 chrX_20355001 RAL-303_100b 5639 chrX 20359109 20359170 chrX 20359212 20359273 42 99 11.0 9.0 10.0 3.8 164 chrX 20359109 intergenic not near genes chrX 20359191 intergenic not near genes chrX 20359273 intergenic not near genes chrX_42_20355001 chrX_20355001 RAL-303_100b 5640 chrX 20369295 20369343 chrX 20369404 20369452 42 107 12.0 10.5 11.2 3.4 157 chrX 20369295 intergenic not near genes chrX 20369374 intergenic not near genes chrX 20369452 intergenic not near genes chrX_42_20365001 chrX_20365001 RAL-303_100b 5641 chrX 20377328 20377335 chrX 20378809 20378827 hobo 4 1488 14.0 30.5 22.2 0.2 1499 chrX 20377328 intergenic not near genes chrX 20378078 intergenic not near genes chrX 20378827 intergenic not near genes chrX_4_20375001 chrX_20375001 RAL-303_100b 5642 chrX 20377336 20377344 chrX 20378797 20378836 hobo 10 1482 10.5 27.5 19.0 0.5 1500 chrX 20377336 intergenic not near genes chrX 20378086 intergenic not near genes chrX 20378836 intergenic not near genes chrX_10_20375001 chrX_20375001 RAL-303_100b 5643 chrX 20415051 20415087 chrX 20415152 20415188 8 97 8.5 6.0 7.2 1.0 137 chrX 20415051 intergenic not near genes chrX 20415120 intergenic not near genes chrX 20415188 intergenic not near genes chrX_8_20415001 chrX_20415001 RAL-303_100b 5644 chrX 20426183 20426183 chrX 20428352 20428359 4 2171 83.5 101.0 92.2 0.0 2176 chrX 20426183 exon cactin + chrX 20427271 intergenic CG11710 -,CG15456 - chrX 20428359 exon CG11710 - chrX_4_20425001 chrX_20425001 RAL-303_100b 5645 chrX 20426178 20426230 chrX 20428369 20428399 12 2185 128.0 91.5 109.8 0.1 2221 chrX 20426178 exon cactin + chrX 20427288 intergenic CG11710 -,CG15456 - chrX 20428399 exon CG11710 - chrX_12_20425001 chrX_20425001 RAL-303_100b 5646 chrX 20443161 20443205 chrX 20443262 20443306 29 101 11.0 13.5 12.2 2.2 145 chrX 20443161 exon CG1695 + chrX 20443234 intron CG1695 + chrX 20443306 intron CG1695 + chrX_29_20440001 chrX_20440001 RAL-303_100b 5647 chrX 20456631 20456686 chrX 20456758 20456803 45 124 12.0 9.5 10.8 3.8 172 chrX 20456631 intron CG32506 + chrX 20456717 intron CG32506 + chrX 20456803 intron CG32506 + chrX_45_20455001 chrX_20455001 RAL-303_100b 5648 chrX 20467990 20467998 chrX 20468104 20468112 6 114 15.5 0.0 7.8 0.7 122 chrX 20467990 intron GstT3 + chrX 20468051 intron GstT3 + chrX 20468112 intron GstT3 + chrX_6_20465001 chrX_20465001 RAL-303_100b 5649 chrX 20468002 20468023 chrX 20468103 20468137 22 112 11.0 0.0 5.5 3.4 135 chrX 20468002 intron GstT3 + chrX 20468070 intron GstT3 + chrX 20468137 intron GstT3 + chrX_22_20465001 chrX_20465001 RAL-303_100b 5650 chrX 20493910 20493928 chrX 20494096 20494114 11 186 0.5 31.0 15.8 0.7 204 chrX 20493910 intron RhoGAP19D - chrX 20494012 intron RhoGAP19D - chrX 20494114 intron RhoGAP19D - chrX_11_20490001 chrX_20490001 RAL-303_100b 5651 chrX 20499132 20499189 chrX 20499238 20499295 51 105 11.5 11.5 11.5 4.1 163 chrX 20499132 intron RhoGAP19D - chrX 20499214 intron RhoGAP19D - chrX 20499295 intron RhoGAP19D - chrX_51_20495001 chrX_20495001 RAL-303_100b 5652 chrX 20504105 20504115 chrX 20505651 20505661 transib2 10 1546 27.5 15.0 21.2 0.5 1556 chrX 20504105 intron RhoGAP19D - chrX 20504883 intron RhoGAP19D - chrX 20505661 intron RhoGAP19D - chrX_10_20500001 chrX_20500001 RAL-303_100b 5653 chrX 20504116 20504157 chrX 20505645 20505703 transib2 46 1541 8.5 14.5 11.5 3.7 1587 chrX 20504116 intron RhoGAP19D - chrX 20504910 intron RhoGAP19D - chrX 20505703 intron RhoGAP19D - chrX_46_20500001 chrX_20500001 RAL-303_100b 5654 chrX 20528574 20528631 chrX 20528947 20529004 56 373 11.5 8.0 9.8 5.2 430 chrX 20528574 intergenic not near genes chrX 20528789 intergenic not near genes chrX 20529004 intergenic not near genes chrX_56_20525001 chrX_20525001 RAL-303_100b 5655 chrX 20531672 20531713 chrX 20531787 20531789 10 110 0.0 11.0 5.5 1.5 117 chrX 20531672 intergenic not near genes chrX 20531730 intergenic not near genes chrX 20531789 intergenic not near genes chrX_10_20530001 chrX_20530001 RAL-303_100b 5656 chrX 9181405 9181410 chrX 20533036 20533041 5 11351631 26.5 36.5 31.5 0.2 11351636 chrX 9181405 3` UTR mei-P26 + chrX 14857223 intron Flo2 + chrX 20533041 intergenic not near genes chrX_5_14855001 chrX_14855001 RAL-303_100b 5657 chrX 20560226 20560280 chrX 20560351 20560405 26 124 7.0 4.5 5.8 3.8 179 chrX 20560226 intron RunxB + chrX 20560316 intron RunxB + chrX 20560405 intron RunxB + chrX_26_20560001 chrX_20560001 RAL-303_100b 5658 chrX 20575131 20575187 chrX 20575234 20575290 38 100 7.5 6.5 7.0 4.8 159 chrX 20575131 intergenic CG42580 + chrX 20575210 intergenic not near genes chrX 20575290 intergenic not near genes chrX_38_20575001 chrX_20575001 RAL-303_100b 5659 chrX 20662286 20662338 chrX 20662394 20662442 20 105 13.0 0.0 6.5 2.7 156 chrX 20662286 intron CG1835 + chrX 20662364 intron CG1835 + chrX 20662442 intron CG1835 + chrX_20_20660001 chrX_20660001 RAL-303_100b 5660 chrX 20708360 20708392 chrX 20708462 20708490 24 100 16.0 21.5 18.8 1.2 130 chrX 20708360 intergenic not near genes chrX 20708425 intergenic not near genes chrX 20708490 intergenic not near genes chrX_24_20705001 chrX_20705001 RAL-303_100b 5661 chrX 20710410 20710419 chrX 20710513 20710522 11 103 9.5 8.0 8.8 1.1 112 chrX 20710410 intergenic not near genes chrX 20710466 intergenic not near genes chrX 20710522 intergenic not near genes chrX_11_20710001 chrX_20710001 RAL-303_100b 5662 chrX 20710422 20710442 chrX 20710507 20710545 9 98 4.0 7.5 5.8 1.3 123 chrX 20710422 intergenic not near genes chrX 20710484 intergenic not near genes chrX 20710545 intergenic not near genes chrX_9_20710001 chrX_20710001 RAL-303_100b 5663 chrX 20719176 20719181 chrX 20719534 20719539 5 358 14.0 14.5 14.2 0.3 363 chrX 20719176 intergenic not near genes chrX 20719358 intergenic not near genes chrX 20719539 intergenic not near genes chrX_5_20715001 chrX_20715001 RAL-303_100b 5664 chrX 20719184 20719201 chrX 20719531 20719559 20 355 10.0 13.5 11.8 1.6 375 chrX 20719184 intergenic not near genes chrX 20719372 intergenic not near genes chrX 20719559 intergenic not near genes chrX_20_20715001 chrX_20715001 RAL-303_100b 5665 chrX 20721727 20721875 chrX 20721869 20721997 18 127 0.0 0.0 0.0 18.0 270 chrX 20721727 intergenic not near genes chrX 20721862 intergenic not near genes chrX 20721997 intergenic not near genes chrX_18_20720001 chrX_20720001 RAL-303_100b 5666 chrX 20810696 20810710 chrX 20810799 20810803 6 101 22.5 8.5 15.5 0.4 107 chrX 20810696 intron shakB - chrX 20810750 intron shakB - chrX 20810803 intron shakB - chrX_6_20810001 chrX_20810001 RAL-303_100b 5667 chrX 20814171 20814228 chrX 20814290 20814346 48 116 11.0 13.0 12.0 3.7 175 chrX 20814171 intron shakB - chrX 20814258 intron shakB - chrX 20814346 intron shakB - chrX_48_20810001 chrX_20810001 RAL-303_100b 5668 chrX 20836703 20836758 chrX 20844330 20844385 roo 56 7625 5.5 10.0 7.8 6.4 7682 chrX 20836703 intron shakB - chrX 20840544 intron shakB - chrX 20844385 intron shakB - chrX_56_20840001 chrX_20840001 RAL-303_100b 5669 chrX 20860219 20860280 chrX 20860343 20860374 34 121 4.0 9.0 6.5 4.5 155 chrX 20860219 intron shakB - chrX 20860296 intron shakB - chrX 20860374 intron shakB - chrX_34_20860001 chrX_20860001 RAL-303_100b 5670 chrX 20874791 20874829 chrX 20874902 20874941 25 110 21.5 18.5 20.0 1.2 150 chrX 20874791 intron shakB - chrX 20874866 intron shakB - chrX 20874941 intron shakB - chrX_25_20870001 chrX_20870001 RAL-303_100b 5671 chrX 20915030 20915074 chrX 20915219 20915270 35 193 7.0 8.0 7.5 4.1 240 chrX 20915030 intron shakB - chrX 20915150 intron shakB - chrX 20915270 intron shakB - chrX_35_20915001 chrX_20915001 RAL-303_100b 5672 chrX 20940698 20940708 chrX 20942192 20942202 hobo 11 1493 25.0 6.5 15.8 0.7 1504 chrX 20940698 intergenic not near genes chrX 20941450 intergenic not near genes chrX 20942202 intergenic not near genes chrX_11_20940001 chrX_20940001 RAL-303_100b 5673 chrX 20940710 20940753 chrX 20942187 20942217 hobo 31 1490 9.5 6.0 7.8 3.5 1507 chrX 20940710 intergenic not near genes chrX 20941464 intergenic not near genes chrX 20942217 intergenic not near genes chrX_31_20940001 chrX_20940001 RAL-303_100b 5674 chrX 20948242 20948283 chrX 20948356 20948397 17 113 0.0 12.5 6.2 2.4 155 chrX 20948242 intergenic not near genes chrX 20948320 intergenic not near genes chrX 20948397 intergenic not near genes chrX_17_20945001 chrX_20945001 RAL-303_100b 5675 chrX 20956947 20957012 chrX 20962416 20962471 I-element 6 5461 0.5 9.0 4.8 1.0 5524 chrX 20956947 intergenic not near genes chrX 20959709 intergenic not near genes chrX 20962471 intergenic Ser6 - chrX_6_20955001 chrX_20955001 RAL-303_100b 5676 chrX 20974173 20974207 chrX 20974381 20974416 24 206 11.0 9.0 10.0 2.2 243 chrX 20974173 intergenic not near genes chrX 20974294 intergenic not near genes chrX 20974416 intergenic not near genes chrX_24_20970001 chrX_20970001 RAL-303_100b 5677 chrX 21022255 21022269 chrX 21022437 21022463 19 193 60.5 27.5 44.0 0.4 208 chrX 21022255 intergenic not near genes chrX 21022359 intergenic not near genes chrX 21022463 intergenic not near genes chrX_19_21020001 chrX_21020001 RAL-303_100b 5678 chrX 21029789 21029802 chrX 21029955 21029968 10 165 9.0 17.5 13.2 0.7 179 chrX 21029789 3` UTR CG1529 - chrX 21029878 3` UTR CG1529 - chrX 21029968 3` UTR CG1529 - chrX_10_21025001 chrX_21025001 RAL-303_100b 5679 chrX 21029803 21029810 chrX 21029939 21029976 5 155 7.0 14.0 10.5 0.4 173 chrX 21029803 3` UTR CG1529 - chrX 21029890 3` UTR CG1529 - chrX 21029976 3` UTR CG1529 - chrX_5_21025001 chrX_21025001 RAL-303_100b 5680 chrX 21075172 21075183 chrX 21075274 21075276 11 101 10.0 0.0 5.0 1.8 104 chrX 21075172 intron bves + chrX 21075224 intron bves + chrX 21075276 intron bves + chrX_11_21075001 chrX_21075001 RAL-303_100b 5681 chrX 21076310 21076358 chrX 21076405 21076462 34 98 11.0 0.0 5.5 5.2 152 chrX 21076310 intron bves + chrX 21076386 intron bves + chrX 21076462 intron bves + chrX_34_21075001 chrX_21075001 RAL-303_100b 5682 chrX 21077573 21077591 chrX 21077687 21077705 13 114 27.0 10.0 18.5 0.7 132 chrX 21077573 intron bves + chrX 21077639 intron bves + chrX 21077705 intron bves + chrX_13_21075001 chrX_21075001 RAL-303_100b 5683 chrX 21077594 21077631 chrX 21077685 21077744 11 110 8.5 10.0 9.2 1.1 150 chrX 21077594 intron bves + chrX 21077669 intron bves + chrX 21077744 intron bves + chrX_11_21075001 chrX_21075001 RAL-303_100b 5684 chrX 21078746 21078782 chrX 21078849 21078880 27 102 8.0 2.0 5.0 4.5 134 chrX 21078746 intron bves + chrX 21078813 intron bves + chrX 21078880 intron bves + chrX_27_21075001 chrX_21075001 RAL-303_100b 5685 chrX 21140890 21140913 chrX 21140997 21141008 5 105 20.0 2.5 11.2 0.4 118 chrX 21140890 3` UTR CG34120 + chrX 21140949 3` UTR CG34120 + chrX 21141008 intergenic CG34120 + chrX_5_21140001 chrX_21140001 RAL-303_100b 5686 chrX 21166115 21166166 chrX 21166218 21166257 39 102 8.5 8.0 8.2 4.2 142 chrX 21166115 intergenic not near genes chrX 21166186 intergenic not near genes chrX 21166257 intergenic not near genes chrX_39_21165001 chrX_21165001 RAL-303_100b 5687 chrX 21190551 21190824 chrX 21190732 21190920 21 122 1.5 0.5 1.0 10.5 369 chrX 21190551 intergenic not near genes chrX 21190736 intergenic not near genes chrX 21190920 intergenic not near genes chrX_21_21190001 chrX_21190001 RAL-303_100b 5688 chrX 21197031 21197090 chrX 21197134 21197193 42 97 7.5 13.5 10.5 3.7 162 chrX 21197031 intergenic not near genes chrX 21197112 intergenic not near genes chrX 21197193 intergenic not near genes chrX_42_21195001 chrX_21195001 RAL-303_100b 5689 chrX 21222043 21222100 chrX 21222153 21222205 19 108 6.0 9.5 7.8 2.2 162 chrX 21222043 intron CG32521 - chrX 21222124 intron CG32521 - chrX 21222205 intron CG32521 - chrX_19_21220001 chrX_21220001 RAL-303_100b 5690 chrX 21268043 21268087 chrX 21268149 21268193 39 104 10.5 10.5 10.5 3.4 150 chrX 21268043 intron CG32521 - chrX 21268118 intron CG32521 - chrX 21268193 intron CG32521 - chrX_39_21265001 chrX_21265001 RAL-303_100b 5691 chrX 21308847 21308876 chrX 21308978 21309027 8 136 10.5 0.0 5.2 1.3 180 chrX 21308847 exon CG1801 - chrX 21308937 intron CG1801 - chrX 21309027 intron CG1801 - chrX_8_21305001 chrX_21305001 RAL-303_100b 5692 chrX 21328092 21328144 chrX 21328228 21328279 30 135 9.0 3.5 6.2 4.2 187 chrX 21328092 3` UTR CG1486 + chrX 21328186 intergenic CG1486 +,tty - chrX 21328279 intergenic CG1486 +,tty - chrX_30_21325001 chrX_21325001 RAL-303_100b 5693 chrX 21388355 21388366 chrX 21388537 21388548 9 181 11.0 7.0 9.0 0.9 193 chrX 21388355 intergenic Hlc - chrX 21388452 intergenic not near genes chrX 21388548 intergenic mst + chrX_9_21385001 chrX_21385001 RAL-303_100b 5694 chrX 21388368 21388406 chrX 21388536 21388588 29 181 5.5 7.0 6.2 4.0 220 chrX 21388368 intergenic Hlc - chrX 21388478 intergenic mst + chrX 21388588 intergenic mst + chrX_29_21385001 chrX_21385001 RAL-303_100b 5695 chrX 21428311 21428371 chrX 21428526 21428586 36 210 10.5 8.5 9.5 3.4 275 chrX 21428311 intron CG42343 - chrX 21428448 intron CG42343 - chrX 21428586 intron CG42343 - chrX_36_21425001 chrX_21425001 RAL-303_100b 5696 chrX 21454841 21454872 chrX 21454949 21454980 17 108 9.5 9.5 9.5 1.6 139 chrX 21454841 intron CG42343 - chrX 21454910 intron CG42343 - chrX 21454980 intron CG42343 - chrX_17_21450001 chrX_21450001 RAL-303_100b 5697 chrX 21455191 21455245 chrX 21455395 21455457 21 205 2.5 0.5 1.5 8.4 266 chrX 21455191 intron CG42343 - chrX 21455324 intron CG42343 - chrX 21455457 intron CG42343 - chrX_21_21455001 chrX_21455001 RAL-303_100b 5698 chrX 21458664 21458727 chrX 21464125 21464188 Ivk 56 5458 13.0 10.5 11.8 4.4 5524 chrX 21458664 intergenic not near genes chrX 21461426 intergenic not near genes chrX 21464188 intergenic not near genes chrX_56_21460001 chrX_21460001 RAL-303_100b 5699 chrX 21466992 21467044 chrX 21467101 21467153 29 108 7.5 13.5 10.5 2.5 161 chrX 21466992 intergenic CR45507 - chrX 21467072 intergenic CR45507 - chrX 21467153 3` UTR CR45507 - chrX_29_21465001 chrX_21465001 RAL-303_100b 5700 chrX 21474386 21474435 chrX 21474772 21474826 1731 28 391 9.0 11.0 10.0 2.5 440 chrX 21474386 intergenic not near genes chrX 21474606 intergenic not near genes chrX 21474826 intergenic not near genes chrX_28_21470001 chrX_21470001 RAL-303_100b 5701 chrX 21492246 21492305 chrX 21492384 21492443 43 137 5.5 10.5 8.0 4.8 197 chrX 21492246 intergenic not near genes chrX 21492344 intergenic not near genes chrX 21492443 intergenic not near genes chrX_43_21490001 chrX_21490001 RAL-303_100b 5702 chrX 21500547 21500556 chrX 21500772 21500782 9 225 11.0 15.0 13.0 0.6 235 chrX 21500547 intron CR45082 - chrX 21500664 intron CR45082 - chrX 21500782 intron CR45082 - chrX_9_21500001 chrX_21500001 RAL-303_100b 5703 chrX 21500558 21500589 chrX 21500762 21500797 11 221 0.5 10.0 5.2 1.8 239 chrX 21500558 intron CR45082 - chrX 21500678 intron CR45082 - chrX 21500797 intron CR45082 - chrX_11_21500001 chrX_21500001 RAL-303_100b 5704 chrX 21565393 21565398 chrX 21565496 21565501 5 103 24.5 10.0 17.2 0.3 108 chrX 21565393 intergenic not near genes chrX 21565447 intergenic not near genes chrX 21565501 intergenic not near genes chrX_5_21565001 chrX_21565001 RAL-303_100b 5705 chrX 21565399 21565439 chrX 21565495 21565542 26 101 11.5 9.5 10.5 2.3 143 chrX 21565399 intergenic not near genes chrX 21565470 intergenic not near genes chrX 21565542 intergenic not near genes chrX_26_21565001 chrX_21565001 RAL-303_100b 5706 chrX 21567931 21567957 chrX 21568037 21568051 7 102 30.5 4.5 17.5 0.4 120 chrX 21567931 intergenic not near genes chrX 21567991 intergenic not near genes chrX 21568051 intergenic not near genes chrX_7_21565001 chrX_21565001 RAL-303_100b 5707 chrX 21573867 21573874 chrX 21573979 21573986 5 112 19.0 5.5 12.2 0.4 119 chrX 21573867 intergenic not near genes chrX 21573926 intergenic not near genes chrX 21573986 intergenic not near genes chrX_5_21570001 chrX_21570001 RAL-303_100b 5708 chrX 21573876 21573916 chrX 21573978 21574026 27 104 7.5 5.5 6.5 3.6 150 chrX 21573876 intergenic not near genes chrX 21573951 intergenic not near genes chrX 21574026 intergenic not near genes chrX_27_21570001 chrX_21570001 RAL-303_100b 5709 chrX 21575519 21575547 chrX 21575623 21575651 21 104 10.5 8.5 9.5 2.0 132 chrX 21575519 intergenic not near genes chrX 21575585 intergenic not near genes chrX 21575651 intergenic not near genes chrX_21_21575001 chrX_21575001 RAL-303_100b 5710 chrX 21575554 21575559 chrX 21575621 21575662 6 96 7.5 8.5 8.0 0.7 108 chrX 21575554 intergenic not near genes chrX 21575608 intergenic not near genes chrX 21575662 intergenic not near genes chrX_6_21575001 chrX_21575001 RAL-303_100b 5711 chrX 21581531 21581574 chrX 21581637 21581680 47 106 5.5 0.5 3.0 11.8 149 chrX 21581531 intergenic not near genes chrX 21581606 intergenic not near genes chrX 21581680 intergenic not near genes chrX_47_21580001 chrX_21580001 RAL-303_100b 5712 chrX 21595548 21595561 chrX 21598646 21598659 micropia 9 3097 13.0 27.5 20.2 0.4 3111 chrX 21595548 intergenic not near genes chrX 21597104 intergenic not near genes chrX 21598659 intergenic not near genes chrX_9_21595001 chrX_21595001 RAL-303_100b 5713 chrX 21602884 21602889 chrX 21602975 21603024 5 125 12.0 18.5 15.2 0.3 140 chrX 21602884 intron CG14476 - chrX 21602954 intron CG14476 - chrX 21603024 exon CG14476 - chrX_5_21600001 chrX_21600001 RAL-303_100b 5714 chrX 21668230 21668288 chrX 21668340 21668398 51 109 109.5 99.5 104.5 0.5 168 chrX 21668230 intergenic not near genes chrX 21668314 intergenic not near genes chrX 21668398 intergenic not near genes chrX_51_21665001 chrX_21665001 RAL-303_100b 5715 chrX 22478873 22478898 chrX 22479031 22479056 29 156 0.0 26.0 13.0 2.1 183 chrX 22478873 intron CG12576 - chrX 22478964 intron CG12576 - chrX 22479056 intron CG12576 - chrX_29_22475001 chrX_22475001 RAL-303_100b 5716 chrX 22522621 22522657 chrX 22525460 22525482 NOF 12 2842 11.0 10.5 10.8 1.0 2861 chrX 22522621 intron CG17600 + chrX 22524052 intron CG17600 + chrX 22525482 intron CG17600 + chrX_12_22520001 chrX_22520001 RAL-303_100b 5717 chrX 22564562 22564571 chrX 22575109 22575138 jockey 18 10549 44.0 23.0 33.5 0.5 10576 chrX 22564562 intergenic not near genes chrX 22569850 intergenic not near genes chrX 22575138 intergenic not near genes chrX_18_22565001 chrX_22565001 RAL-303_100b 5718 chrX 22585521 22585537 chrX 22585604 22585646 13 107 9.5 12.0 10.8 1.1 125 chrX 22585521 intron Cda4 - chrX 22585584 intron Cda4 - chrX 22585646 intron Cda4 - chrX_13_22585001 chrX_22585001 RAL-303_100b 5719 chrX 22660545 22660602 chrX 22660654 22660706 15 108 15.5 4.5 10.0 1.4 161 chrX 22660545 intron CR44997 + chrX 22660626 intron CR44997 + chrX 22660706 intron CR44997 + chrX_15_22660001 chrX_22660001 RAL-303_100b 5720 chrX 22661962 22661977 chrX 22662056 22662083 10 103 0.5 22.0 11.2 0.8 121 chrX 22661962 intron CR44997 + chrX 22662022 intron CR44997 + chrX 22662083 intron CR44997 + chrX_10_22660001 chrX_22660001 RAL-303_100b 5721 chrX 22665772 22665828 chrX 22665872 22665932 50 102 12.5 11.5 12.0 3.8 160 chrX 22665772 intron CR44997 + chrX 22665852 intron CR44997 + chrX 22665932 intron CR44997 + chrX_50_22665001 chrX_22665001 RAL-303_100b 5722 chrX 22697474 22697517 chrX 22701796 22701839 Juan 29 4321 19.5 24.0 21.8 1.3 4365 chrX 22697474 intron CR44997 + chrX 22699656 intron CR44997 + chrX 22701839 intron CR44997 + chrX_29_22695001 chrX_22695001 RAL-303_100b 5723 chrX 22771487 22771490 chrX 22774798 22774806 297 4 3314 26.0 7.5 16.8 0.2 3319 chrX 22771487 intron CR44997 + chrX 22773146 intron CR44997 + chrX 22774806 intron CR44997 + chrX_4_22770001 chrX_22770001 RAL-303_100b 5724 chrX 22771491 22771511 chrX 22774797 22774827 297 16 3312 19.5 7.5 13.5 1.1 3336 chrX 22771491 intron CR44997 + chrX 22773159 intron CR44997 + chrX 22774827 intron CR44997 + chrX_16_22770001 chrX_22770001 RAL-303_100b 5725 chrX 22771514 22771538 chrX 22774795 22774844 297 19 3307 8.0 7.5 7.8 2.2 3330 chrX 22771514 intron CR44997 + chrX 22773179 intron CR44997 + chrX 22774844 intron CR44997 + chrX_19_22770001 chrX_22770001 RAL-303_100b 5726 chrX 22776351 22776382 chrX 22776664 22776695 20 313 0.0 12.0 6.0 2.9 344 chrX 22776351 intron CR44997 + chrX 22776523 intron CR44997 + chrX 22776695 intron CR44997 + chrX_20_22775001 chrX_22775001 RAL-303_100b 5727 chrX 22784052 22784102 chrX 22784160 22784210 40 107 12.0 8.5 10.2 3.6 158 chrX 22784052 intron CR44997 + chrX 22784131 intron CR44997 + chrX 22784210 intron CR44997 + chrX_40_22780001 chrX_22780001 RAL-303_100b 5728 chrX 22798747 22798801 chrX 22798889 22798943 30 138 10.5 0.5 5.5 4.6 196 chrX 22798747 intergenic not near genes chrX 22798845 intergenic not near genes chrX 22798943 intergenic not near genes chrX_30_22795001 chrX_22795001 RAL-303_100b 5729 chrX 22811972 22812001 chrX 22816769 22816798 F-element 27 4797 26.5 15.0 20.8 1.2 4826 chrX 22811972 intergenic CG12446 - chrX 22814385 intergenic not near genes chrX 22816798 intergenic not near genes chrX_27_22810001 chrX_22810001 RAL-303_100b 5730 chrX 22812002 22812003 chrX 22816768 22816800 F-element 6 4788 25.0 15.0 20.0 0.3 4798 chrX 22812002 intergenic CG12446 - chrX 22814401 intergenic not near genes chrX 22816800 intergenic not near genes chrX_6_22810001 chrX_22810001 RAL-303_100b 5731 chrX 22824223 22824443 chrX 22824364 22824601 74 153 13.0 12.0 12.5 5.5 378 chrX 22824223 intergenic fog - chrX 22824412 3` UTR fog - chrX 22824601 3` UTR fog - chrX_74_22820001 chrX_22820001 RAL-303_100b 5732 chrX 22849822 22849828 chrX 22850080 22850086 4 258 22.5 11.0 16.8 0.2 264 chrX 22849822 intron,intron fog -,CG42346 + chrX 22849954 intron,intron fog -,CG42346 + chrX 22850086 intron,intron fog -,CG42346 + chrX_4_22845001 chrX_22845001 RAL-303_100b 5733 chrX 22849836 22849870 chrX 22850074 22850128 22 256 5.5 9.5 7.5 2.6 292 chrX 22849836 intron,intron fog -,CG42346 + chrX 22849982 intron,intron fog -,CG42346 + chrX 22850128 intron,intron fog -,CG42346 + chrX_22_22845001 chrX_22845001 RAL-303_100b 5734 chrX 22862387 22862387 chrX 22862575 22862585 5 190 67.0 43.5 55.2 0.1 198 chrX 22862387 intron CG42346 + chrX 22862486 intron CG42346 + chrX 22862585 intron CG42346 + chrX_5_22860001 chrX_22860001 RAL-303_100b 5735 chrX 22867958 22867964 chrX 22868092 22868103 8 138 38.0 3.5 20.8 0.4 145 chrX 22867958 exon CG42346 + chrX 22868030 intron CG42346 + chrX 22868103 intron CG42346 + chrX_8_22865001 chrX_22865001 RAL-303_100b 5736 chrX 22867965 22868009 chrX 22868091 22868156 37 137 15.5 3.5 9.5 3.5 191 chrX 22867965 exon CG42346 + chrX 22868060 intron CG42346 + chrX 22868156 intron CG42346 + chrX_37_22865001 chrX_22865001 RAL-303_100b 5737 chrX 22870853 22870899 chrX 22870962 22871015 28 112 10.0 19.5 14.8 1.8 162 chrX 22870853 intron,3` UTR CG42346 +,CR43656 - chrX 22870934 intron,3` UTR CG42346 +,CR43656 - chrX 22871015 intron,3` UTR CG42346 +,CR43656 - chrX_28_22870001 chrX_22870001 RAL-303_100b 5738 chrX 22895700 22895760 chrX 22895843 22895902 57 139 10.5 13.0 11.8 4.5 202 chrX 22895700 intergenic not near genes chrX 22895801 intergenic not near genes chrX 22895902 intergenic not near genes chrX_57_22895001 chrX_22895001 RAL-303_100b 5739 chrX 22982813 22982873 chrX 22983021 22983049 65 205 13.0 11.5 12.2 4.9 236 chrX 22982813 3` UTR,exon stnA -,stnB - chrX 22982931 intron,intron stnA -,stnB - chrX 22983049 intron,intron stnA -,stnB - chrX_65_22980001 chrX_22980001 RAL-303_100b 5740 chrX 22987079 22987088 chrX 22989763 22989772 Burdock 5 2684 25.5 11.0 18.2 0.3 2693 chrX 22987079 intron,intron stnA -,stnB - chrX 22988426 intron,intron stnA -,stnB - chrX 22989772 intron,intron stnA -,stnB - chrX_5_22985001 chrX_22985001 RAL-303_100b 5741 chrX 22987091 22987133 chrX 22989762 22989802 Burdock 41 2679 10.0 11.0 10.5 3.6 2711 chrX 22987091 intron,intron stnA -,stnB - chrX 22988446 intron,intron stnA -,stnB - chrX 22989802 intron,intron stnA -,stnB - chrX_41_22985001 chrX_22985001 RAL-303_100b 5742 chrX 22996287 22996301 chrX 23003546 23003560 roo 13 7258 22.5 18.5 20.5 0.6 7273 chrX 22996287 intron,intron stnA -,stnB - chrX 22999924 intron,intron stnA -,stnB - chrX 23003560 intron,intron stnA -,stnB - chrX_13_22995001 chrX_22995001 RAL-303_100b 5743 chrX 22996302 22996337 chrX 23003542 23003596 roo 30 7257 9.0 17.0 13.0 2.1 7294 chrX 22996302 intron,intron stnA -,stnB - chrX 22999949 intron,intron stnA -,stnB - chrX 23003596 intron,intron stnA -,stnB - chrX_30_22995001 chrX_22995001 RAL-303_100b 5744 chrY 104707 104716 chrY 104813 104847 9 128 6.5 12.0 9.2 0.9 140 chrY 104707 intron kl-5 - chrY 104777 intron kl-5 - chrY 104847 intron kl-5 - chrY_9_100001 chrY_100001 RAL-303_100b 5745 chrY 655933 655971 chrY 656124 656167 5 198 2.5 4.5 3.5 1.1 234 chrY 655933 intron kl-2 + chrY 656050 intron kl-2 + chrY 656167 exon kl-2 + chrY_5_655001 chrY_655001 RAL-303_100b 5746 chrY 864694 864739 chrY 864796 864839 7 101 73.0 69.5 71.2 0.1 145 chrY 864694 intergenic not near genes chrY 864766 intergenic not near genes chrY 864839 intergenic not near genes chrY_7_860001 chrY_860001 RAL-303_100b 5747 chrY 975598 975607 chrY 975735 976007 4 334 374.0 510.0 442.0 0.0 409 chrY 975598 intergenic not near genes chrY 975802 intergenic not near genes chrY 976007 intergenic not near genes chrY_4_975001 chrY_975001 RAL-303_100b 5748 chrY 975770 975823 chrY 975875 975942 33 126 558.5 580.5 569.5 0.1 172 chrY 975770 intergenic not near genes chrY 975856 intergenic not near genes chrY 975942 intergenic not near genes chrY_33_975001 chrY_975001 RAL-303_100b 5749 chrY 1419894 1419908 chrY 1420157 1420187 9 275 38.0 24.5 31.2 0.3 293 chrY 1419894 intergenic not near genes chrY 1420040 intergenic not near genes chrY 1420187 intergenic not near genes chrY_9_1420001 chrY_1420001 RAL-303_100b 5750 chrY 1420638 1420650 chrY 1420739 1420751 5 101 24.0 33.0 28.5 0.2 113 chrY 1420638 intergenic not near genes chrY 1420694 intergenic not near genes chrY 1420751 intergenic not near genes chrY_5_1420001 chrY_1420001 RAL-303_100b 5751 chrY 1420638 1420651 chrY 1420759 1420772 4 121 25.0 29.0 27.0 0.1 134 chrY 1420638 intergenic not near genes chrY 1420705 intergenic not near genes chrY 1420772 intergenic not near genes chrY_4_1420001 chrY_1420001 RAL-303_100b 5752 chrY 1431368 1431373 chrY 1447415 1447434 Doc 5 16058 24.0 20.5 22.2 0.2 16066 chrY 1431368 intergenic not near genes chrY 1439401 intergenic not near genes chrY 1447434 intergenic not near genes chrY_5_1435001 chrY_1435001 RAL-303_100b 5753 chrY 3561981 3562027 chrY 3562088 3562135 5 108 13.0 12.0 12.5 0.4 154 chrY 3561981 intergenic not near genes chrY 3562058 intergenic not near genes chrY 3562135 intergenic not near genes chrY_5_3560001 chrY_3560001 RAL-303_100b 5754 chrY 3664578 3664632 chrY 3664706 3664760 8 127 1.0 3.5 2.2 2.5 182 chrY 3664578 intergenic CG40948 + chrY 3664669 intergenic CG40948 + chrY 3664760 intergenic CG40948 + chrY_8_3660001 chrY_3660001 RAL-303_100b 5755 chrY 3664965 3665014 chrY 3665094 3665143 10 128 2.0 2.5 2.2 3.1 178 chrY 3664965 intergenic CG40948 + chrY 3665054 intergenic CG40948 + chrY 3665143 intergenic not near genes chrY_10_3665001 chrY_3665001 RAL-303_100b 5756 chrY 3666411 3666420 chrY 3666589 3666598 9 176 5.0 1.5 3.2 2.1 187 chrY 3666411 intergenic not near genes chrY 3666504 intergenic not near genes chrY 3666598 intergenic not near genes chrY_9_3665001 chrY_3665001 RAL-303_100b 5757 chrY 3666427 3666456 chrY 3666584 3666634 5 170 3.5 1.5 2.5 1.4 207 chrY 3666427 intergenic not near genes chrY 3666530 intergenic not near genes chrY 3666634 intergenic not near genes chrY_5_3665001 chrY_3665001 RAL-303_100b