SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 47465 47491 chr2L 52569 52581 jockey 8 5102 3.5 0.5 2.0 2.7 5116 chr2L 47465 intron Cda5 - chr2L 50023 intron Cda5 - chr2L 52581 intron Cda5 - chr2L_8_50001 chr2L_50001 RAL-28 2 chr2L 179461 179480 chr2L 179539 179562 6 81 4.0 1.0 2.5 1.7 101 chr2L 179461 intron spen + chr2L 179512 intron spen + chr2L 179562 intron spen + chr2L_6_175001 chr2L_175001 RAL-28 3 chr2L 436875 436896 chr2L 436950 436973 5 76 0.5 1.0 0.8 2.8 98 chr2L 436875 intron ex + chr2L 436924 intron ex + chr2L 436973 intron ex + chr2L_5_435001 chr2L_435001 RAL-28 4 chr2L 632706 632734 chr2L 632786 632804 7 76 2.5 1.5 2.0 2.3 98 chr2L 632706 intergenic not near genes chr2L 632755 intergenic not near genes chr2L 632804 intergenic not near genes chr2L_7_630001 chr2L_630001 RAL-28 5 chr2L 686918 686946 chr2L 695958 695985 roo 5 9040 1.5 2.0 1.8 1.8 9067 chr2L 686918 intron ds - chr2L 691452 intron ds - chr2L 695985 intron ds - chr2L_5_690001 chr2L_690001 RAL-28 6 chr2L 763595 763626 chr2L 763671 763674 10 68 3.0 1.5 2.2 3.1 79 chr2L 763595 intergenic not near genes chr2L 763634 intergenic not near genes chr2L 763674 intergenic not near genes chr2L_10_760001 chr2L_760001 RAL-28 7 chr2L 770464 770487 chr2L 772245 772268 Bari1 5 1777 2.0 2.0 2.0 1.7 1804 chr2L 770464 intergenic not near genes chr2L 771366 intergenic not near genes chr2L 772268 intergenic CR44614 + chr2L_5_770001 chr2L_770001 RAL-28 8 chr2L 877848 877863 chr2L 877929 877942 7 79 5.0 2.0 3.5 1.6 94 chr2L 877848 3` UTR,exon CG15824 -,ninaA + chr2L 877895 3` UTR,intron CG15824 -,ninaA + chr2L 877942 3` UTR,intron CG15824 -,ninaA + chr2L_7_875001 chr2L_875001 RAL-28 9 chr2L 922464 922492 chr2L 922545 922573 7 81 0.0 3.0 1.5 2.8 109 chr2L 922464 intergenic CG4341 + chr2L 922518 intergenic CG4341 + chr2L 922573 intergenic CG4341 + chr2L_7_920001 chr2L_920001 RAL-28 10 chr2L 931632 931662 chr2L 931711 931739 9 78 2.5 2.0 2.2 2.8 107 chr2L 931632 intron CG4341 + chr2L 931686 intron CG4341 + chr2L 931739 intron CG4341 + chr2L_9_930001 chr2L_930001 RAL-28 11 chr2L 976877 976911 chr2L 984513 984547 roo 8 7636 2.5 1.0 1.8 2.9 7670 chr2L 976877 intergenic not near genes chr2L 980712 intergenic not near genes chr2L 984547 intergenic not near genes chr2L_8_980001 chr2L_980001 RAL-28 12 chr2L 1049960 1049976 chr2L 1050039 1050055 5 79 2.5 2.0 2.2 1.6 95 chr2L 1049960 3` UTR S - chr2L 1050008 3` UTR S - chr2L 1050055 3` UTR S - chr2L_5_1050001 chr2L_1050001 RAL-28 13 chr2L 1066097 1066120 chr2L 1066178 1066197 5 80 2.5 2.0 2.2 1.6 100 chr2L 1066097 intron S - chr2L 1066147 intron S - chr2L 1066197 intron S - chr2L_5_1065001 chr2L_1065001 RAL-28 14 chr2L 1218406 1218433 chr2L 1218496 1218519 4 89 1.5 1.5 1.5 1.6 113 chr2L 1218406 intergenic not near genes chr2L 1218462 intergenic not near genes chr2L 1218519 intergenic not near genes chr2L_4_1215001 chr2L_1215001 RAL-28 15 chr2L 1220128 1220161 chr2L 1227593 1227624 blood 5 7464 1.0 1.5 1.2 2.3 7496 chr2L 1220128 intron CG42329 + chr2L 1223876 intron CG42329 + chr2L 1227624 intron CG42329 + chr2L_5_1220001 chr2L_1220001 RAL-28 16 chr2L 1261133 1261246 chr2L 1261215 1261327 10 81 0.0 0.0 0.0 10.0 194 chr2L 1261133 intron robo3 + chr2L 1261230 intron robo3 + chr2L 1261327 intron robo3 + chr2L_10_1260001 chr2L_1260001 RAL-28 17 chr2L 1322023 1322051 chr2L 1322111 1322140 8 85 2.5 2.5 2.5 2.3 117 chr2L 1322023 intergenic not near genes chr2L 1322082 intergenic not near genes chr2L 1322140 intergenic not near genes chr2L_8_1320001 chr2L_1320001 RAL-28 18 chr2L 1336921 1336948 chr2L 1337105 1337131 11 183 2.0 1.0 1.5 4.4 210 chr2L 1336921 intergenic not near genes chr2L 1337026 intergenic not near genes chr2L 1337131 intergenic not near genes chr2L_11_1335001 chr2L_1335001 RAL-28 19 chr2L 1422346 1422375 chr2L 1422458 1422487 10 112 1.0 5.0 3.0 2.5 141 chr2L 1422346 intergenic not near genes chr2L 1422416 intergenic not near genes chr2L 1422487 intergenic not near genes chr2L_10_1420001 chr2L_1420001 RAL-28 20 chr2L 1508053 1508270 chr2L 1508136 1508357 7 83 1.0 3.0 2.0 2.3 304 chr2L 1508053 intergenic not near genes chr2L 1508205 intergenic not near genes chr2L 1508357 intergenic not near genes chr2L_7_1505001 chr2L_1505001 RAL-28 21 chr2L 1590955 1590983 chr2L 1591031 1591059 7 76 2.0 2.5 2.2 2.2 104 chr2L 1590955 intron haf + chr2L 1591007 intron haf + chr2L 1591059 intron haf + chr2L_7_1590001 chr2L_1590001 RAL-28 22 chr2L 1618669 1618682 chr2L 1618745 1618758 4 75 2.0 1.0 1.5 1.6 89 chr2L 1618669 3` UTR CR44603 - chr2L 1618714 3` UTR CR44603 - chr2L 1618758 3` UTR CR44603 - chr2L_4_1615001 chr2L_1615001 RAL-28 23 chr2L 1711355 1711382 chr2L 1711679 1711703 mdg3 5 320 3.5 1.5 2.5 1.4 348 chr2L 1711355 3` UTR,3` UTR mRpL48 +,frtz - chr2L 1711529 3` UTR frtz - chr2L 1711703 3` UTR frtz - chr2L_5_1710001 chr2L_1710001 RAL-28 24 chr2L 1721822 1721849 chr2L 1721906 1721932 6 83 0.0 0.5 0.2 5.0 110 chr2L 1721822 intron Rim2 - chr2L 1721877 intron Rim2 - chr2L 1721932 intron Rim2 - chr2L_6_1720001 chr2L_1720001 RAL-28 25 chr2L 1744809 1744828 chr2L 1744887 1744906 10 78 3.0 3.5 3.2 2.4 97 chr2L 1744809 intron CG17646 + chr2L 1744858 intron CG17646 + chr2L 1744906 intron CG17646 + chr2L_10_1740001 chr2L_1740001 RAL-28 26 chr2L 2100386 2100402 chr2L 2109537 2109546 roo 4 9146 3.5 5.0 4.2 0.8 9160 chr2L 2100386 intron dpr3 - chr2L 2104966 intron dpr3 - chr2L 2109546 intron dpr3 - chr2L_4_2100001 chr2L_2100001 RAL-28 27 chr2L 2112140 2112145 chr2L 2119793 2119801 opus 5 7658 0.5 6.5 3.5 1.1 7661 chr2L 2112140 intergenic not near genes chr2L 2115970 intergenic not near genes chr2L 2119801 intergenic not near genes chr2L_5_2115001 chr2L_2115001 RAL-28 28 chr2L 2125514 2125535 chr2L 2125856 2125878 4 342 0.5 17.5 9.0 0.4 364 chr2L 2125514 intergenic not near genes chr2L 2125696 intergenic not near genes chr2L 2125878 intergenic not near genes chr2L_4_2125001 chr2L_2125001 RAL-28 29 chr2L 2177381 2177411 chr2L 2177461 2177491 11 76 0.0 0.5 0.2 9.2 110 chr2L 2177381 intron aop - chr2L 2177436 intron aop - chr2L 2177491 intron aop - chr2L_11_2175001 chr2L_2175001 RAL-28 30 chr2L 2260802 2260833 chr2L 2260888 2260919 7 86 3.0 2.5 2.8 1.8 117 chr2L 2260802 intergenic not near genes chr2L 2260860 intergenic not near genes chr2L 2260919 intergenic not near genes chr2L_7_2260001 chr2L_2260001 RAL-28 31 chr2L 2287913 2287931 chr2L 2288000 2288032 15 98 3.5 1.5 2.5 4.3 119 chr2L 2287913 exon CG42658 - chr2L 2287972 intergenic CG42658 - chr2L 2288032 intergenic CG42658 -,CG17237 - chr2L_15_2285001 chr2L_2285001 RAL-28 32 chr2L 2311080 2311090 chr2L 2311176 2311186 4 96 0.5 1.0 0.8 2.2 106 chr2L 2311080 intron CG9967 - chr2L 2311133 intron CG9967 - chr2L 2311186 intron CG9967 - chr2L_4_2310001 chr2L_2310001 RAL-28 33 chr2L 2317597 2317627 chr2L 2317674 2317700 4 67 7.0 7.5 7.2 0.5 103 chr2L 2317597 intron,intron CG9967 -,eys + chr2L 2317648 intron,intron CG9967 -,eys + chr2L 2317700 intron,intron CG9967 -,eys + chr2L_4_2315001 chr2L_2315001 RAL-28 34 chr2L 2449419 2449449 chr2L 2449590 2449604 7 168 1.0 1.0 1.0 3.5 185 chr2L 2449419 intron dpp + chr2L 2449512 intron dpp + chr2L 2449604 intron dpp + chr2L_7_2445001 chr2L_2445001 RAL-28 35 chr2L 2661220 2661232 chr2L 2663045 2663069 I-element 5 1828 0.5 3.0 1.8 1.8 1849 chr2L 2661220 intergenic not near genes chr2L 2662144 intergenic not near genes chr2L 2663069 intergenic not near genes chr2L_5_2660001 chr2L_2660001 RAL-28 36 chr2L 2698882 2698891 chr2L 2698969 2698978 4 87 1.0 4.5 2.8 1.1 96 chr2L 2698882 intron CG31690 + chr2L 2698930 intron CG31690 + chr2L 2698978 intron CG31690 + chr2L_4_2695001 chr2L_2695001 RAL-28 37 chr2L 2772611 2772627 chr2L 2779195 2779211 297 5 6584 1.0 2.0 1.5 2.0 6600 chr2L 2772611 3` UTR Syt1 - chr2L 2775911 intron Syt1 - chr2L 2779211 3` UTR Syt1 - chr2L_5_2775001 chr2L_2775001 RAL-28 38 chr2L 2807475 2807501 chr2L 2807556 2807582 7 81 4.5 5.0 4.8 1.2 107 chr2L 2807475 intron daw + chr2L 2807528 intron daw + chr2L 2807582 intron daw + chr2L_7_2805001 chr2L_2805001 RAL-28 39 chr2L 2826541 2826576 chr2L 2826631 2826661 6 87 0.0 3.5 1.8 2.1 120 chr2L 2826541 intron Duox - chr2L 2826601 intron Duox - chr2L 2826661 intron Duox - chr2L_6_2825001 chr2L_2825001 RAL-28 40 chr2L 2926723 2926754 chr2L 2927145 2927177 8 422 1.5 0.5 1.0 4.0 454 chr2L 2926723 intron lilli + chr2L 2926950 intron lilli + chr2L 2927177 intron lilli + chr2L_8_2925001 chr2L_2925001 RAL-28 41 chr2L 2937431 2937451 chr2L 2937508 2937528 6 74 1.0 1.5 1.2 2.7 97 chr2L 2937431 intron lilli + chr2L 2937480 intron lilli + chr2L 2937528 intron lilli + chr2L_6_2935001 chr2L_2935001 RAL-28 42 chr2L 3108876 3108896 chr2L 3108951 3108973 9 76 0.0 3.0 1.5 3.6 97 chr2L 3108876 intron toc - chr2L 3108924 intron toc - chr2L 3108973 intron toc - chr2L_9_3105001 chr2L_3105001 RAL-28 43 chr2L 3113421 3113446 chr2L 3113516 3113540 4 93 0.0 2.5 1.2 1.8 119 chr2L 3113421 intron toc - chr2L 3113480 intron toc - chr2L 3113540 intron toc - chr2L_4_3110001 chr2L_3110001 RAL-28 44 chr2L 3192217 3192232 chr2L 3192328 3192343 4 111 2.0 3.0 2.5 1.1 126 chr2L 3192217 exon CG34393 - chr2L 3192280 intron CG34393 - chr2L 3192343 intron CG34393 - chr2L_4_3190001 chr2L_3190001 RAL-28 45 chr2L 3251504 3251518 chr2L 3259069 3259083 springer 4 7565 1.0 0.5 0.8 2.2 7579 chr2L 3251504 intergenic not near genes chr2L 3255294 intergenic not near genes chr2L 3259083 intergenic not near genes chr2L_4_3255001 chr2L_3255001 RAL-28 46 chr2L 3302156 3302183 chr2L 3302240 3302267 9 82 0.0 2.0 1.0 4.5 111 chr2L 3302156 intron CG9663 - chr2L 3302212 intron CG9663 - chr2L 3302267 intron CG9663 - chr2L_9_3300001 chr2L_3300001 RAL-28 47 chr2L 3432723 3432748 chr2L 3435798 3435817 6 3070 11.5 8.0 9.8 0.6 3094 chr2L 3432723 intergenic not near genes chr2L 3434270 intergenic not near genes chr2L 3435817 intergenic not near genes chr2L_6_3430001 chr2L_3430001 RAL-28 48 chr2L 3482153 3482184 chr2L 3482242 3482272 6 89 0.5 1.0 0.8 3.3 119 chr2L 3482153 intron CG15414 - chr2L 3482212 intron CG15414 - chr2L 3482272 intron CG15414 - chr2L_6_3480001 chr2L_3480001 RAL-28 49 chr2L 3508352 3508375 chr2L 3508430 3508453 6 78 1.0 2.5 1.8 2.1 101 chr2L 3508352 intergenic tim -,CR45299 + chr2L 3508402 intergenic CR45299 +,tim - chr2L 3508453 intergenic CR45299 +,tim - chr2L_6_3505001 chr2L_3505001 RAL-28 50 chr2L 3819033 3819062 chr2L 3819115 3819144 5 82 2.5 0.0 1.2 2.3 111 chr2L 3819033 intergenic CR44077 + chr2L 3819088 intergenic not near genes chr2L 3819144 intergenic not near genes chr2L_5_3815001 chr2L_3815001 RAL-28 51 chr2L 3857138 3857172 chr2L 3857215 3857249 12 77 2.0 3.0 2.5 3.4 111 chr2L 3857138 3` UTR CR45450 - chr2L 3857194 intergenic CR45450 - chr2L 3857249 intergenic CR45450 - chr2L_12_3855001 chr2L_3855001 RAL-28 52 chr2L 4060177 4060199 chr2L 4060253 4060275 4 76 0.0 1.5 0.8 2.2 98 chr2L 4060177 intron ed + chr2L 4060226 intron ed + chr2L 4060275 intron ed + chr2L_4_4060001 chr2L_4060001 RAL-28 53 chr2L 4150632 4150656 chr2L 4150711 4150736 4 78 0.0 2.0 1.0 2.0 104 chr2L 4150632 exon CG2955 + chr2L 4150684 exon CG2955 + chr2L 4150736 exon CG2955 + chr2L_4_4150001 chr2L_4150001 RAL-28 54 chr2L 4155608 4155638 chr2L 4155849 4155878 4 241 0.0 0.5 0.2 3.3 270 chr2L 4155608 intergenic not near genes chr2L 4155743 intergenic not near genes chr2L 4155878 intergenic not near genes chr2L_4_4155001 chr2L_4155001 RAL-28 55 chr2L 4181292 4181304 chr2L 4183916 4183936 Burdock 7 2627 1.5 0.5 1.0 3.5 2644 chr2L 4181292 intergenic not near genes chr2L 4182614 intergenic not near genes chr2L 4183936 intergenic not near genes chr2L_7_4180001 chr2L_4180001 RAL-28 56 chr2L 4262070 4262101 chr2L 4262146 4262166 9 69 4.5 3.5 4.0 1.8 96 chr2L 4262070 intergenic not near genes chr2L 4262118 intergenic not near genes chr2L 4262166 intergenic not near genes chr2L_9_4260001 chr2L_4260001 RAL-28 57 chr2L 4275088 4275098 chr2L 4275172 4275176 4 82 1.0 1.5 1.2 1.8 88 chr2L 4275088 intergenic not near genes chr2L 4275132 intergenic not near genes chr2L 4275176 intergenic not near genes chr2L_4_4275001 chr2L_4275001 RAL-28 58 chr2L 4436392 4436421 chr2L 4436585 4436614 8 190 3.5 3.0 3.2 1.9 222 chr2L 4436392 intron CG15431 - chr2L 4436503 intron CG15431 - chr2L 4436614 intron CG15431 - chr2L_8_4435001 chr2L_4435001 RAL-28 59 chr2L 4601707 4601736 chr2L 4609148 4609177 mdg1 12 7438 1.0 4.0 2.5 3.4 7470 chr2L 4601707 intron dp - chr2L 4605442 intron dp - chr2L 4609177 intron dp - chr2L_12_4605001 chr2L_4605001 RAL-28 60 chr2L 4661847 4661854 chr2L 4669427 4669434 opus 4 7580 1.0 3.0 2.0 1.3 7587 chr2L 4661847 intergenic not near genes chr2L 4665640 intergenic not near genes chr2L 4669434 intergenic not near genes chr2L_4_4665001 chr2L_4665001 RAL-28 61 chr2L 4841072 4841103 chr2L 4841145 4841147 15 71 3.5 3.5 3.5 3.3 75 chr2L 4841072 intron CG12194 + chr2L 4841110 intron CG12194 + chr2L 4841147 exon CG12194 + chr2L_15_4840001 chr2L_4840001 RAL-28 62 chr2L 4923236 4923244 chr2L 4923327 4923335 5 91 0.0 0.0 0.0 5.0 99 chr2L 4923236 intron hoe1 - chr2L 4923286 intron hoe1 - chr2L 4923335 intron hoe1 - chr2L_5_4920001 chr2L_4920001 RAL-28 63 chr2L 5040688 5040716 chr2L 5040783 5040812 5 93 1.5 1.0 1.2 2.3 124 chr2L 5040688 3` UTR,3` UTR,3` UTR CG14042 +,SP555 +,CG31650 - chr2L 5040750 3` UTR,3` UTR,3` UTR CG14042 +,SP555 +,CG31650 - chr2L 5040812 3` UTR,3` UTR,3` UTR CG14042 +,SP555 +,CG31650 - chr2L_5_5040001 chr2L_5040001 RAL-28 64 chr2L 5120975 5120992 chr2L 5121069 5121084 4 94 2.0 2.0 2.0 1.3 109 chr2L 5120975 intron Msp300 + chr2L 5121030 intron Msp300 + chr2L 5121084 intron Msp300 + chr2L_4_5120001 chr2L_5120001 RAL-28 65 chr2L 5147732 5147755 chr2L 5147963 5147987 6 231 1.5 3.5 2.5 1.7 255 chr2L 5147732 intron Msp300 + chr2L 5147860 intron Msp300 + chr2L 5147987 intron Msp300 + chr2L_6_5145001 chr2L_5145001 RAL-28 66 chr2L 5200546 5200551 chr2L 5215794 5215813 6 15255 24.0 21.0 22.5 0.3 15267 chr2L 5200546 exon Msp300 + chr2L 5208180 exon Cyp28d2 + chr2L 5215813 exon CG14034 - chr2L_6_5205001 chr2L_5205001 RAL-28 67 chr2L 5242869 5242899 chr2L 5243055 5243072 11 186 1.5 3.5 2.5 3.1 203 chr2L 5242869 intron tkv - chr2L 5242970 intron tkv - chr2L 5243072 intron tkv - chr2L_11_5240001 chr2L_5240001 RAL-28 68 chr2L 5435704 5435727 chr2L 5435874 5435902 8 172 0.0 3.0 1.5 3.2 198 chr2L 5435704 3` UTR CR31647 - chr2L 5435803 3` UTR CR31647 - chr2L 5435902 3` UTR CR31647 - chr2L_8_5435001 chr2L_5435001 RAL-28 69 chr2L 5501448 5501468 chr2L 5501524 5501544 4 76 0.5 0.0 0.2 3.3 96 chr2L 5501448 intergenic not near genes chr2L 5501496 intergenic not near genes chr2L 5501544 intergenic not near genes chr2L_4_5500001 chr2L_5500001 RAL-28 70 chr2L 5781528 5781559 chr2L 5782344 5782347 6 810 0.5 1.0 0.8 3.3 819 chr2L 5781528 intron CG9171 - chr2L 5781938 intron CG9171 - chr2L 5782347 intron CG9171 - chr2L_6_5780001 chr2L_5780001 RAL-28 71 chr2L 5816180 5816199 chr2L 5816256 5816274 6 76 1.5 1.5 1.5 2.4 94 chr2L 5816180 intergenic not near genes chr2L 5816227 intergenic not near genes chr2L 5816274 intergenic not near genes chr2L_6_5815001 chr2L_5815001 RAL-28 72 chr2L 5827710 5827739 chr2L 5836718 5836746 roo 4 9002 2.0 3.0 2.5 1.1 9036 chr2L 5827710 intron TrissinR + chr2L 5832228 intron TrissinR + chr2L 5836746 intron TrissinR + chr2L_4_5830001 chr2L_5830001 RAL-28 73 chr2L 5839722 5839749 chr2L 5839896 5839919 4 173 2.0 3.5 2.8 1.1 197 chr2L 5839722 intron TrissinR + chr2L 5839820 intron TrissinR + chr2L 5839919 intron TrissinR + chr2L_4_5835001 chr2L_5835001 RAL-28 74 chr2L 5905620 5905642 chr2L 5905799 5905833 4 188 0.5 2.0 1.2 1.8 213 chr2L 5905620 3` UTR CR43808 - chr2L 5905726 3` UTR CR43808 - chr2L 5905833 3` UTR CR43808 - chr2L_4_5905001 chr2L_5905001 RAL-28 75 chr2L 5931508 5931524 chr2L 5931590 5931608 4 83 0.5 2.5 1.5 1.6 100 chr2L 5931508 intron dsf + chr2L 5931558 intron dsf + chr2L 5931608 intron dsf + chr2L_4_5930001 chr2L_5930001 RAL-28 76 chr2L 6070896 6070917 chr2L 6070984 6071003 4 85 0.0 2.0 1.0 2.0 107 chr2L 6070896 intergenic Kr-h2 +,CG9154 - chr2L 6070950 intergenic Kr-h2 +,CG9154 - chr2L 6071003 5` UTR Kr-h2 + chr2L_4_6070001 chr2L_6070001 RAL-28 77 chr2L 6242871 6242879 chr2L 6242954 6242963 5 83 2.0 0.5 1.2 2.3 92 chr2L 6242871 intergenic not near genes chr2L 6242917 intergenic not near genes chr2L 6242963 intergenic not near genes chr2L_5_6240001 chr2L_6240001 RAL-28 78 chr2L 6299809 6299828 chr2L 6299980 6299998 4 171 2.5 4.0 3.2 1.0 189 chr2L 6299809 intron Ddr + chr2L 6299904 intron Ddr + chr2L 6299998 intron Ddr + chr2L_4_6295001 chr2L_6295001 RAL-28 79 chr2L 6363163 6363181 chr2L 6366089 6366107 Burdock 7 2925 2.0 3.5 2.8 1.8 2944 chr2L 6363163 intergenic not near genes chr2L 6364635 intergenic not near genes chr2L 6366107 intergenic not near genes chr2L_7_6360001 chr2L_6360001 RAL-28 80 chr2L 6426862 6426888 chr2L 6445116 6445148 roo 7 18259 1.5 1.5 1.5 2.8 18286 chr2L 6426862 3` UTR CG9527 - chr2L 6436005 intron CG9527 - chr2L 6445148 exon CG9527 - chr2L_7_6435001 chr2L_6435001 RAL-28 81 chr2L 6514131 6514161 chr2L 6514205 6514211 7 70 2.5 3.5 3.0 1.8 80 chr2L 6514131 intron CG31637 + chr2L 6514171 intron CG31637 + chr2L 6514211 intron CG31637 + chr2L_7_6510001 chr2L_6510001 RAL-28 82 chr2L 6544376 6544395 chr2L 6544467 6544485 4 91 1.5 2.0 1.8 1.4 109 chr2L 6544376 intron eya - chr2L 6544430 intron eya - chr2L 6544485 intron eya - chr2L_4_6540001 chr2L_6540001 RAL-28 83 chr2L 6590094 6590116 chr2L 6590171 6590179 4 72 3.0 2.5 2.8 1.1 85 chr2L 6590094 intron CG11319 - chr2L 6590136 intron CG11319 - chr2L 6590179 intron CG11319 - chr2L_4_6590001 chr2L_6590001 RAL-28 84 chr2L 6626887 6626911 chr2L 6626972 6626988 6 84 2.0 2.5 2.2 1.9 101 chr2L 6626887 intron Oatp26F - chr2L 6626938 intron Oatp26F - chr2L 6626988 intron Oatp26F - chr2L_6_6625001 chr2L_6625001 RAL-28 85 chr2L 6655536 6655543 chr2L 6655890 6655905 5 357 1.0 3.5 2.2 1.6 369 chr2L 6655536 exon CG31633 - chr2L 6655720 exon CG31633 - chr2L 6655905 exon CG31633 - chr2L_5_6655001 chr2L_6655001 RAL-28 86 chr2L 6746101 6746116 chr2L 6746175 6746191 4 75 1.0 1.0 1.0 2.0 90 chr2L 6746101 intron CG11221 + chr2L 6746146 intron CG11221 + chr2L 6746191 intron CG11221 + chr2L_4_6745001 chr2L_6745001 RAL-28 87 chr2L 6767471 6767496 chr2L 6767557 6767582 8 85 6.0 2.0 4.0 1.6 111 chr2L 6767471 exon CG11321 - chr2L 6767526 exon CG11321 - chr2L 6767582 exon CG11321 - chr2L_8_6765001 chr2L_6765001 RAL-28 88 chr2L 6876789 6876806 chr2L 6882980 6882997 diver 4 6188 1.0 2.5 1.8 1.4 6208 chr2L 6876789 intron Nlg2 + chr2L 6879893 intron Nlg2 + chr2L 6882997 intron Nlg2 + chr2L_4_6875001 chr2L_6875001 RAL-28 89 chr2L 6891450 6891471 chr2L 6891548 6891568 8 98 2.0 1.0 1.5 3.2 118 chr2L 6891450 intron Nlg2 + chr2L 6891509 intron Nlg2 + chr2L 6891568 intron Nlg2 + chr2L_8_6890001 chr2L_6890001 RAL-28 90 chr2L 7089879 7089906 chr2L 7089989 7090015 7 110 2.5 1.5 2.0 2.3 136 chr2L 7089879 intergenic not near genes chr2L 7089947 intergenic not near genes chr2L 7090015 intergenic not near genes chr2L_7_7085001 chr2L_7085001 RAL-28 91 chr2L 7115007 7115023 chr2L 7115136 7115152 4 128 0.0 0.5 0.2 3.3 145 chr2L 7115007 intron Pvf3 - chr2L 7115080 intron Pvf3 - chr2L 7115152 intron Pvf3 - chr2L_4_7115001 chr2L_7115001 RAL-28 92 chr2L 7244725 7244745 chr2L 7244850 7244870 4 125 2.5 3.5 3.0 1.0 145 chr2L 7244725 intron Ndae1 - chr2L 7244798 intron Ndae1 - chr2L 7244870 intron Ndae1 - chr2L_4_7240001 chr2L_7240001 RAL-28 93 chr2L 7338666 7338696 chr2L 7338754 7338784 10 83 2.5 4.0 3.2 2.4 118 chr2L 7338666 intron Wnt6 + chr2L 7338725 intron Wnt6 + chr2L 7338784 intron Wnt6 + chr2L_10_7335001 chr2L_7335001 RAL-28 94 chr2L 7405779 7405803 chr2L 7405857 7405870 5 77 1.0 0.0 0.5 3.3 91 chr2L 7405779 intron CG5177 + chr2L 7405824 intron CG5177 + chr2L 7405870 intron CG5177 + chr2L_5_7405001 chr2L_7405001 RAL-28 95 chr2L 7959044 7959072 chr2L 7960451 7960479 pogo 9 1407 1.0 1.5 1.2 4.1 1435 chr2L 7959044 intron Snoo - chr2L 7959762 intron Snoo - chr2L 7960479 intron Snoo - chr2L_9_7955001 chr2L_7955001 RAL-28 96 chr2L 8044102 8044122 chr2L 8044181 8044201 5 78 3.0 1.5 2.2 1.6 99 chr2L 8044102 intron CG7466 + chr2L 8044152 intron CG7466 + chr2L 8044201 intron CG7466 + chr2L_5_8040001 chr2L_8040001 RAL-28 97 chr2L 8166040 8166066 chr2L 8166130 8166156 7 89 2.0 0.5 1.2 3.2 116 chr2L 8166040 intron Piezo + chr2L 8166098 intron Piezo + chr2L 8166156 intron Piezo + chr2L_7_8165001 chr2L_8165001 RAL-28 98 chr2L 8334473 8334485 chr2L 8334552 8334564 6 79 1.5 3.0 2.2 1.9 91 chr2L 8334473 intergenic not near genes chr2L 8334518 intergenic not near genes chr2L 8334564 intergenic not near genes chr2L_6_8330001 chr2L_8330001 RAL-28 99 chr2L 8507443 8507472 chr2L 8507525 8507554 6 80 0.5 0.0 0.2 5.0 111 chr2L 8507443 intergenic not near genes chr2L 8507498 intergenic not near genes chr2L 8507554 intergenic not near genes chr2L_6_8505001 chr2L_8505001 RAL-28 100 chr2L 8594486 8594497 chr2L 8601529 8601550 297 5 7050 0.5 0.5 0.5 3.3 7064 chr2L 8594486 intron,3` UTR Sema-1a +,CR43855 - chr2L 8598018 intron Sema-1a + chr2L 8601550 intron Sema-1a + chr2L_5_8595001 chr2L_8595001 RAL-28 101 chr2L 8719204 8719232 chr2L 8719280 8719308 5 76 0.5 0.0 0.2 4.2 104 chr2L 8719204 intron raw - chr2L 8719256 intron raw - chr2L 8719308 intron raw - chr2L_5_8715001 chr2L_8715001 RAL-28 102 chr2L 8723118 8723144 chr2L 8731494 8731521 Tirant 5 8375 0.5 0.5 0.5 3.3 8403 chr2L 8723118 intron raw - chr2L 8727320 intron raw - chr2L 8731521 intron raw - chr2L_5_8725001 chr2L_8725001 RAL-28 103 chr2L 8799810 8799827 chr2L 8799924 8799942 5 115 1.5 1.0 1.2 2.3 132 chr2L 8799810 intergenic not near genes chr2L 8799876 intergenic not near genes chr2L 8799942 intergenic not near genes chr2L_5_8795001 chr2L_8795001 RAL-28 104 chr2L 8857982 8857999 chr2L 8858059 8858063 5 72 5.0 1.0 3.0 1.2 81 chr2L 8857982 intergenic not near genes chr2L 8858022 intergenic not near genes chr2L 8858063 intergenic not near genes chr2L_5_8855001 chr2L_8855001 RAL-28 105 chr2L 8910724 8910745 chr2L 8910814 8910835 8 90 3.0 1.5 2.2 2.5 111 chr2L 8910724 intron CG34398 + chr2L 8910780 intron CG34398 + chr2L 8910835 intron CG34398 + chr2L_8_8910001 chr2L_8910001 RAL-28 106 chr2L 9084336 9084340 chr2L 16217660 16217660 8 7133322 11.0 10.0 10.5 0.7 7133324 chr2L 9084336 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_8_12650001 chr2L_12650001 RAL-28 107 chr2L 9217968 9218003 chr2L 9222752 9222790 Doc 4 4786 1.0 0.0 0.5 2.7 4822 chr2L 9217968 intron tai + chr2L 9220379 intron tai + chr2L 9222790 intron tai + chr2L_4_9220001 chr2L_9220001 RAL-28 108 chr2L 9280016 9280022 chr2L 9280110 9280116 5 93 0.5 2.5 1.5 2.0 100 chr2L 9280016 intron Ggamma30A + chr2L 9280066 intron Ggamma30A + chr2L 9280116 intron Ggamma30A + chr2L_5_9280001 chr2L_9280001 RAL-28 109 chr2L 9285025 9285045 chr2L 9285101 9285115 5 73 1.5 2.0 1.8 1.8 90 chr2L 9285025 intron Ggamma30A + chr2L 9285070 intron Ggamma30A + chr2L 9285115 intron Ggamma30A + chr2L_5_9285001 chr2L_9285001 RAL-28 110 chr2L 9393513 9393529 chr2L 9396480 9396496 jockey 4 2967 3.0 5.5 4.2 0.8 2983 chr2L 9393513 intron Shawl - chr2L 9395004 intron Shawl - chr2L 9396496 intron Shawl - chr2L_4_9395001 chr2L_9395001 RAL-28 111 chr2L 9441323 9441357 chr2L 9441427 9441461 6 103 1.5 1.0 1.2 2.7 138 chr2L 9441323 intron numb + chr2L 9441392 intron numb + chr2L 9441461 intron numb + chr2L_6_9440001 chr2L_9440001 RAL-28 112 chr2L 9490528 9490548 chr2L 9490608 9490626 7 79 6.0 3.0 4.5 1.3 98 chr2L 9490528 intergenic not near genes chr2L 9490577 intergenic not near genes chr2L 9490626 intergenic not near genes chr2L_7_9490001 chr2L_9490001 RAL-28 113 chr2L 9493249 9493276 chr2L 9493333 9493358 7 81 1.0 0.5 0.8 3.9 109 chr2L 9493249 intron Gdi - chr2L 9493304 intron Gdi - chr2L 9493358 intron Gdi - chr2L_7_9490001 chr2L_9490001 RAL-28 114 chr2L 9846857 9846879 chr2L 9846932 9846952 4 75 2.0 0.0 1.0 2.0 95 chr2L 9846857 intron nAChRalpha6 - chr2L 9846904 intron nAChRalpha6 - chr2L 9846952 intron nAChRalpha6 - chr2L_4_9845001 chr2L_9845001 RAL-28 115 chr2L 9920530 9920554 chr2L 9920637 9920657 5 106 1.0 4.5 2.8 1.3 127 chr2L 9920530 exon CG4594 + chr2L 9920594 exon CG4594 + chr2L 9920657 exon CG4594 + chr2L_5_9920001 chr2L_9920001 RAL-28 116 chr2L 9973730 9973754 chr2L 9980848 9980858 HMS-Beagle 7 7114 8.5 4.5 6.5 0.9 7128 chr2L 9973730 intergenic not near genes chr2L 9977294 intergenic not near genes chr2L 9980858 intergenic not near genes chr2L_7_9975001 chr2L_9975001 RAL-28 117 chr2L 9986349 9986383 chr2L 9986444 9986468 8 90 1.5 3.0 2.2 2.5 119 chr2L 9986349 intron bib + chr2L 9986408 intron bib + chr2L 9986468 intron bib + chr2L_8_9985001 chr2L_9985001 RAL-28 118 chr2L 10019961 10019981 chr2L 10020295 10020315 7 333 1.5 3.5 2.5 2.0 354 chr2L 10019961 intergenic not near genes chr2L 10020138 intergenic not near genes chr2L 10020315 intergenic not near genes chr2L_7_10020001 chr2L_10020001 RAL-28 119 chr2L 10020368 10020396 chr2L 10020623 10020652 4 254 2.0 2.0 2.0 1.3 284 chr2L 10020368 intergenic not near genes chr2L 10020510 intergenic not near genes chr2L 10020652 intergenic not near genes chr2L_4_10020001 chr2L_10020001 RAL-28 120 chr2L 10095636 10095661 chr2L 10095716 10095741 4 80 0.5 1.0 0.8 2.2 105 chr2L 10095636 intron CG44153 - chr2L 10095688 intron CG44153 - chr2L 10095741 intron CG44153 - chr2L_4_10095001 chr2L_10095001 RAL-28 121 chr2L 10153201 10153226 chr2L 10153280 10153305 6 79 3.5 1.5 2.5 1.7 104 chr2L 10153201 intron,exon CG44153 -,CG4839 + chr2L 10153253 intron,intron CG44153 -,CG4839 + chr2L 10153305 intron,intron CG44153 -,CG4839 + chr2L_6_10150001 chr2L_10150001 RAL-28 122 chr2L 10156320 10156353 chr2L 10163790 10163816 blood 8 7468 1.5 2.5 2.0 2.7 7496 chr2L 10156320 intron,3` UTR CG44153 -,CG4839 + chr2L 10160068 intron CG44153 - chr2L 10163816 intron CG44153 - chr2L_8_10160001 chr2L_10160001 RAL-28 123 chr2L 10469378 10469401 chr2L 10470409 10470432 4 1031 2.0 3.5 2.8 1.1 1054 chr2L 10469378 intron RluA-1 - chr2L 10469905 intron RluA-1 - chr2L 10470432 intron RluA-1 - chr2L_4_10465001 chr2L_10465001 RAL-28 124 chr2L 10490281 10490304 chr2L 10490363 10490386 6 80 2.5 1.5 2.0 2.0 105 chr2L 10490281 3` UTR,3` UTR CG6144 +,CG13144 - chr2L 10490334 3` UTR,3` UTR CG6144 +,CG13144 - chr2L 10490386 3` UTR,3` UTR CG6144 +,CG13144 - chr2L_6_10490001 chr2L_10490001 RAL-28 125 chr2L 10572701 10572729 chr2L 10572782 10572809 8 80 1.0 3.5 2.2 2.5 108 chr2L 10572701 intron Trim9 + chr2L 10572755 intron Trim9 + chr2L 10572809 intron Trim9 + chr2L_8_10570001 chr2L_10570001 RAL-28 126 chr2L 10580794 10580824 chr2L 10580875 10580905 4 81 0.0 0.5 0.2 3.3 111 chr2L 10580794 intron Trim9 + chr2L 10580850 intron Trim9 + chr2L 10580905 intron Trim9 + chr2L_4_10580001 chr2L_10580001 RAL-28 127 chr2L 10862846 10862866 chr2L 10864459 10864479 Rt1c 4 1614 4.5 3.5 4.0 0.8 1633 chr2L 10862846 3` UTR CR43807 - chr2L 10863662 intron CR43807 - chr2L 10864479 3` UTR CR43807 - chr2L_4_10860001 chr2L_10860001 RAL-28 128 chr2L 10912989 10913001 chr2L 10913065 10913080 4 78 5.0 3.0 4.0 0.8 91 chr2L 10912989 intergenic not near genes chr2L 10913034 intergenic not near genes chr2L 10913080 intergenic not near genes chr2L_4_10910001 chr2L_10910001 RAL-28 129 chr2L 10946952 10946965 chr2L 10956166 10956179 roo 5 9215 2.5 2.5 2.5 1.4 9227 chr2L 10946952 intron dpr2 - chr2L 10951566 intron dpr2 - chr2L 10956179 intron dpr2 - chr2L_5_10950001 chr2L_10950001 RAL-28 130 chr2L 10986928 10986951 chr2L 10987012 10987035 5 84 1.5 1.0 1.2 2.3 107 chr2L 10986928 intron piwi - chr2L 10986982 intron piwi - chr2L 10987035 intron piwi - chr2L_5_10985001 chr2L_10985001 RAL-28 131 chr2L 11056565 11056600 chr2L 11056645 11056682 7 81 0.5 0.0 0.2 5.8 117 chr2L 11056565 intron Samuel - chr2L 11056624 intron Samuel - chr2L 11056682 intron Samuel - chr2L_7_11055001 chr2L_11055001 RAL-28 132 chr2L 11130501 11130521 chr2L 11130586 11130611 5 89 2.5 1.0 1.8 1.8 110 chr2L 11130501 5` UTR RfC38 - chr2L 11130556 5` UTR RfC38 - chr2L 11130611 5` UTR RfC38 - chr2L_5_11130001 chr2L_11130001 RAL-28 133 chr2L 11224062 11224091 chr2L 11224173 11224202 8 110 1.0 0.5 0.8 4.4 140 chr2L 11224062 intron ab + chr2L 11224132 intron ab + chr2L 11224202 intron ab + chr2L_8_11220001 chr2L_11220001 RAL-28 134 chr2L 11450120 11450156 chr2L 11450206 11450223 5 76 0.0 1.0 0.5 3.3 103 chr2L 11450120 intergenic not near genes chr2L 11450172 intergenic not near genes chr2L 11450223 intergenic not near genes chr2L_5_11450001 chr2L_11450001 RAL-28 135 chr2L 11563642 11563658 chr2L 11568846 11568862 copia 4 5204 3.5 4.0 3.8 0.8 5220 chr2L 11563642 intergenic not near genes chr2L 11566252 intergenic not near genes chr2L 11568862 intergenic not near genes chr2L_4_11565001 chr2L_11565001 RAL-28 136 chr2L 11614052 11614082 chr2L 11615546 11615572 hopper2 5 1493 3.5 3.0 3.2 1.2 1520 chr2L 11614052 intron kek2 + chr2L 11614812 intron kek2 + chr2L 11615572 intron kek2 + chr2L_5_11610001 chr2L_11610001 RAL-28 137 chr2L 11713511 11713539 chr2L 11720975 11721007 blood 6 7466 2.0 0.5 1.2 2.7 7496 chr2L 11713511 intergenic not near genes chr2L 11717259 intergenic not near genes chr2L 11721007 intergenic CR44143 + chr2L_6_11715001 chr2L_11715001 RAL-28 138 chr2L 11879332 11879348 chr2L 11879506 11879510 7 171 1.5 2.5 2.0 2.3 178 chr2L 11879332 intron Pde1c - chr2L 11879421 intron Pde1c - chr2L 11879510 intron Pde1c - chr2L_7_11875001 chr2L_11875001 RAL-28 139 chr2L 11932175 11932197 chr2L 11932254 11932275 5 78 1.0 0.5 0.8 2.8 100 chr2L 11932175 intergenic not near genes chr2L 11932225 intergenic not near genes chr2L 11932275 intergenic not near genes chr2L_5_11930001 chr2L_11930001 RAL-28 140 chr2L 11953744 11953765 chr2L 11953823 11953831 4 76 0.5 2.5 1.5 1.6 87 chr2L 11953744 3` UTR CR43314 - chr2L 11953788 3` UTR CR43314 - chr2L 11953831 3` UTR CR43314 - chr2L_4_11950001 chr2L_11950001 RAL-28 141 chr2L 12192362 12192365 chr2L 12192484 12192490 4 124 1.5 2.0 1.8 1.4 128 chr2L 12192362 intron aret + chr2L 12192426 intron aret + chr2L 12192490 intron aret + chr2L_4_12190001 chr2L_12190001 RAL-28 142 chr2L 12229597 12229609 chr2L 12229669 12229686 4 76 0.5 2.5 1.5 1.6 89 chr2L 12229597 intron aret + chr2L 12229642 intron aret + chr2L 12229686 intron aret + chr2L_4_12225001 chr2L_12225001 RAL-28 143 chr2L 12487885 12487915 chr2L 12487966 12487995 5 81 3.0 1.5 2.2 1.6 110 chr2L 12487885 intron bun - chr2L 12487940 intron bun - chr2L 12487995 intron bun - chr2L_5_12485001 chr2L_12485001 RAL-28 144 chr2L 12529245 12529445 chr2L 12529378 12529521 8 90 1.0 1.5 1.2 3.6 276 chr2L 12529245 intron bun - chr2L 12529383 intron bun - chr2L 12529521 intron bun - chr2L_8_12525001 chr2L_12525001 RAL-28 145 chr2L 12558321 12558353 chr2L 12565450 12565482 HMS-Beagle 5 7129 0.5 2.0 1.2 2.3 7161 chr2L 12558321 intergenic not near genes chr2L 12561902 intergenic not near genes chr2L 12565482 intergenic not near genes chr2L_5_12560001 chr2L_12560001 RAL-28 146 chr2L 12647705 12647731 chr2L 12647787 12647813 4 82 0.0 2.5 1.2 1.8 108 chr2L 12647705 intergenic not near genes chr2L 12647759 intergenic not near genes chr2L 12647813 intergenic not near genes chr2L_4_12645001 chr2L_12645001 RAL-28 147 chr2L 12682873 12682906 chr2L 12682952 12682982 10 77 3.0 0.5 1.8 3.6 109 chr2L 12682873 intron pdm2 + chr2L 12682928 intron pdm2 + chr2L 12682982 intron pdm2 + chr2L_10_12680001 chr2L_12680001 RAL-28 148 chr2L 12728918 12728947 chr2L 12729161 12729189 pogo 6 240 0.0 3.0 1.5 2.4 271 chr2L 12728918 intron MRP + chr2L 12729054 intron MRP + chr2L 12729189 exon MRP + chr2L_6_12725001 chr2L_12725001 RAL-28 149 chr2L 12739178 12739195 chr2L 12743959 12743976 Doc 4 4780 3.0 2.0 2.5 1.1 4798 chr2L 12739178 exon MRP + chr2L 12741577 intron MRP + chr2L 12743976 intron MRP + chr2L_4_12740001 chr2L_12740001 RAL-28 150 chr2L 12781805 12781814 chr2L 12789247 12789257 Quasimodo 4 7443 5.5 2.0 3.8 0.8 7452 chr2L 12781805 intergenic not near genes chr2L 12785531 intergenic not near genes chr2L 12789257 intergenic not near genes chr2L_4_12785001 chr2L_12785001 RAL-28 151 chr2L 12861696 12861721 chr2L 12863160 12863179 hobo 9 1465 3.0 4.5 3.8 1.9 1483 chr2L 12861696 intergenic not near genes chr2L 12862438 intergenic not near genes chr2L 12863179 intergenic not near genes chr2L_9_12860001 chr2L_12860001 RAL-28 152 chr2L 12894021 12894053 chr2L 12895486 12895519 hobo 4 1463 6.0 3.0 4.5 0.7 1498 chr2L 12894021 intergenic not near genes chr2L 12894770 intergenic not near genes chr2L 12895519 intergenic not near genes chr2L_4_12890001 chr2L_12890001 RAL-28 153 chr2L 12933853 12933876 chr2L 12941318 12941334 blood 5 7462 7.0 1.0 4.0 1.0 7481 chr2L 12933853 intergenic not near genes chr2L 12937594 intergenic not near genes chr2L 12941334 intergenic not near genes chr2L_5_12935001 chr2L_12935001 RAL-28 154 chr2L 13152228 13152256 chr2L 13152306 13152306 7 71 5.0 1.5 3.2 1.7 78 chr2L 13152228 intergenic not near genes chr2L 13152267 intergenic not near genes chr2L 13152306 intergenic not near genes chr2L_7_13150001 chr2L_13150001 RAL-28 155 chr2L 13231881 13231914 chr2L 13231992 13232025 8 111 3.5 0.5 2.0 2.7 144 chr2L 13231881 intergenic Prosalpha6T + chr2L 13231953 intergenic Prosalpha6T + chr2L 13232025 intergenic Prosalpha6T + chr2L_8_13230001 chr2L_13230001 RAL-28 156 chr2L 13266377 13266410 chr2L 13266465 13266497 6 87 1.0 1.0 1.0 3.0 120 chr2L 13266377 intron CG44085 + chr2L 13266437 intron CG44085 + chr2L 13266497 intron CG44085 + chr2L_6_13265001 chr2L_13265001 RAL-28 157 chr2L 13405658 13405680 chr2L 13410455 13410477 Doc 6 4795 2.0 3.5 2.8 1.6 4819 chr2L 13405658 exon CG7110 + chr2L 13408068 intron CG7110 + chr2L 13410477 intron CG7110 + chr2L_6_13405001 chr2L_13405001 RAL-28 158 chr2L 13462005 13462030 chr2L 13462139 13462163 6 134 2.5 1.0 1.8 2.1 158 chr2L 13462005 intron CG42784 + chr2L 13462084 intron CG42784 + chr2L 13462163 intron CG42784 + chr2L_6_13460001 chr2L_13460001 RAL-28 159 chr2L 13481465 13481477 chr2L 13482059 13482084 jockey 4 604 2.5 5.0 3.8 0.8 619 chr2L 13481465 intron CG42784 + chr2L 13481774 intron CG42784 + chr2L 13482084 intron CG42784 + chr2L_4_13480001 chr2L_13480001 RAL-28 160 chr2L 13540670 13540685 chr2L 13540749 13540763 6 78 2.5 1.5 2.0 2.0 93 chr2L 13540670 intron B4 - chr2L 13540716 intron B4 - chr2L 13540763 intron,5` UTR B4 -,CG16852 + chr2L_6_13540001 chr2L_13540001 RAL-28 161 chr2L 13560403 13560420 chr2L 13565224 13565241 F-element 4 4821 1.5 0.5 1.0 2.0 4838 chr2L 13560403 intron kuz + chr2L 13562822 intron kuz + chr2L 13565241 intron kuz + chr2L_4_13560001 chr2L_13560001 RAL-28 162 chr2L 13633512 13633525 chr2L 13633594 13633604 5 82 4.0 2.5 3.2 1.2 92 chr2L 13633512 exon kuz + chr2L 13633558 intron kuz + chr2L 13633604 intron kuz + chr2L_5_13630001 chr2L_13630001 RAL-28 163 chr2L 13699558 13699581 chr2L 13699633 13699658 6 76 1.0 4.0 2.5 1.7 100 chr2L 13699558 intron CG31814 - chr2L 13699608 intron CG31814 - chr2L 13699658 intron CG31814 - chr2L_6_13695001 chr2L_13695001 RAL-28 164 chr2L 13714451 13714476 chr2L 13714542 13714567 5 90 1.0 0.5 0.8 2.8 116 chr2L 13714451 intron CG31814 - chr2L 13714509 intron CG31814 - chr2L 13714567 intron CG31814 - chr2L_5_13710001 chr2L_13710001 RAL-28 165 chr2L 13842141 13842151 chr2L 13842224 13842235 4 82 0.5 0.0 0.2 3.3 94 chr2L 13842141 intron CenG1A + chr2L 13842188 intron CenG1A + chr2L 13842235 intron CenG1A + chr2L_4_13840001 chr2L_13840001 RAL-28 166 chr2L 13853088 13853114 chr2L 13862238 13862264 roo 5 9150 0.5 1.5 1.0 2.5 9176 chr2L 13853088 intron CenG1A + chr2L 13857676 intron CenG1A + chr2L 13862264 intron CenG1A + chr2L_5_13855001 chr2L_13855001 RAL-28 167 chr2L 14180068 14180094 chr2L 14180143 14180170 5 76 2.5 2.0 2.2 1.6 102 chr2L 14180068 intron CG43333 - chr2L 14180119 intron CG43333 - chr2L 14180170 intron CG43333 - chr2L_5_14180001 chr2L_14180001 RAL-28 168 chr2L 14209024 14209045 chr2L 14209128 14209133 6 100 1.5 1.0 1.2 2.7 109 chr2L 14209024 intron Dyrk2 - chr2L 14209078 intron Dyrk2 - chr2L 14209133 intron Dyrk2 - chr2L_6_14205001 chr2L_14205001 RAL-28 169 chr2L 14246289 14246315 chr2L 14246366 14246393 4 77 0.0 0.0 0.0 4.0 104 chr2L 14246289 intergenic not near genes chr2L 14246341 intergenic not near genes chr2L 14246393 intergenic not near genes chr2L_4_14245001 chr2L_14245001 RAL-28 170 chr2L 14516418 14516444 chr2L 14516595 14516622 6 178 0.0 1.5 0.8 3.3 204 chr2L 14516418 intergenic not near genes chr2L 14516520 intergenic not near genes chr2L 14516622 intergenic not near genes chr2L_6_14515001 chr2L_14515001 RAL-28 171 chr2L 14564194 14564223 chr2L 14564270 14564298 9 72 1.5 0.5 1.0 4.5 104 chr2L 14564194 intergenic CG3473 - chr2L 14564246 intergenic not near genes chr2L 14564298 intergenic not near genes chr2L_9_14560001 chr2L_14560001 RAL-28 172 chr2L 14617908 14617925 chr2L 14617988 14618005 5 79 2.0 3.0 2.5 1.4 97 chr2L 14617908 intron,intron,intron osp -,Adh +,Adhr + chr2L 14617956 intron,intron,intron osp -,Adh +,Adhr + chr2L 14618005 intron,intron,intron osp -,Adh +,Adhr + chr2L_5_14615001 chr2L_14615001 RAL-28 173 chr2L 14642568 14642593 chr2L 14651731 14651756 roo 7 9163 3.0 2.0 2.5 2.0 9188 chr2L 14642568 intron osp - chr2L 14647162 intron osp - chr2L 14651756 intron osp - chr2L_7_14645001 chr2L_14645001 RAL-28 174 chr2L 14747534 14747564 chr2L 14747621 14747640 5 82 0.5 2.0 1.2 2.3 106 chr2L 14747534 intergenic not near genes chr2L 14747587 intergenic not near genes chr2L 14747640 intergenic not near genes chr2L_5_14745001 chr2L_14745001 RAL-28 175 chr2L 14778811 14778824 chr2L 14779099 14779112 4 288 4.0 8.5 6.2 0.6 301 chr2L 14778811 intergenic not near genes chr2L 14778962 intergenic not near genes chr2L 14779112 intergenic not near genes chr2L_4_14775001 chr2L_14775001 RAL-28 176 chr2L 14795613 14795617 chr2L 14796098 14796113 4 494 5.0 2.0 3.5 0.9 500 chr2L 14795613 exon CG18420 - chr2L 14795863 intron CG18420 - chr2L 14796113 intron CG18420 - chr2L_4_14795001 chr2L_14795001 RAL-28 177 chr2L 14803877 14803911 chr2L 14809080 14809114 copia 10 5202 1.5 3.0 2.2 3.1 5237 chr2L 14803877 intergenic not near genes chr2L 14806496 intergenic not near genes chr2L 14809114 intergenic not near genes chr2L_10_14805001 chr2L_14805001 RAL-28 178 chr2L 14817880 14817908 chr2L 14817969 14817997 5 89 0.5 1.5 1.0 2.5 117 chr2L 14817880 intergenic not near genes chr2L 14817938 intergenic not near genes chr2L 14817997 intergenic not near genes chr2L_5_14815001 chr2L_14815001 RAL-28 179 chr2L 14840981 14841009 chr2L 14841068 14841094 7 85 0.5 1.5 1.0 3.5 113 chr2L 14840981 3` UTR CR43805 - chr2L 14841038 3` UTR CR43805 - chr2L 14841094 3` UTR CR43805 - chr2L_7_14840001 chr2L_14840001 RAL-28 180 chr2L 14854604 14854627 chr2L 14854687 14854687 6 80 0.0 0.5 0.2 5.0 83 chr2L 14854604 intergenic not near genes chr2L 14854646 intergenic not near genes chr2L 14854687 intergenic not near genes chr2L_6_14850001 chr2L_14850001 RAL-28 181 chr2L 14889675 14889685 chr2L 14889768 14889778 7 92 2.0 3.5 2.8 1.8 103 chr2L 14889675 intergenic not near genes chr2L 14889726 intergenic not near genes chr2L 14889778 intergenic not near genes chr2L_7_14885001 chr2L_14885001 RAL-28 182 chr2L 15161258 15161264 chr2L 15161393 15161400 4 135 1.0 1.0 1.0 2.0 142 chr2L 15161258 intergenic CR44770 + chr2L 15161329 intergenic CR44770 + chr2L 15161400 intergenic CR44770 +,CG4168 - chr2L_4_15160001 chr2L_15160001 RAL-28 183 chr2L 15551985 15551993 chr2L 15552063 15552071 4 78 1.0 2.0 1.5 1.6 86 chr2L 15551985 3` UTR CG15256 + chr2L 15552028 3` UTR CG15256 + chr2L 15552071 intergenic CG15256 + chr2L_4_15550001 chr2L_15550001 RAL-28 184 chr2L 15643995 15644028 chr2L 15644078 15644085 4 75 1.0 1.5 1.2 1.8 90 chr2L 15643995 intergenic CG4587 - chr2L 15644040 intergenic CG4587 - chr2L 15644085 intergenic CG4587 - chr2L_4_15640001 chr2L_15640001 RAL-28 185 chr2L 15768683 15768689 chr2L 15769151 15769158 4 468 15.0 23.5 19.2 0.2 475 chr2L 15768683 3` UTR Ku80 - chr2L 15768920 exon Ku80 - chr2L 15769158 exon Ku80 - chr2L_4_15765001 chr2L_15765001 RAL-28 186 chr2L 15906199 15906208 chr2L 15906288 15906297 4 88 0.0 3.0 1.5 1.6 98 chr2L 15906199 intron beat-Ib - chr2L 15906248 intron beat-Ib - chr2L 15906297 intron beat-Ib - chr2L_4_15905001 chr2L_15905001 RAL-28 187 chr2L 15919880 15919908 chr2L 15919957 15919980 6 73 2.5 2.5 2.5 1.7 100 chr2L 15919880 intron beat-Ib - chr2L 15919930 intron beat-Ib - chr2L 15919980 intron beat-Ib - chr2L_6_15915001 chr2L_15915001 RAL-28 188 chr2L 15956023 15956059 chr2L 15957490 15957525 hobo 10 1465 3.0 2.0 2.5 2.9 1502 chr2L 15956023 intron beat-Ib - chr2L 15956774 intron beat-Ib - chr2L 15957525 intron beat-Ib - chr2L_10_15955001 chr2L_15955001 RAL-28 189 chr2L 16001478 16001490 chr2L 16001564 16001576 5 86 0.0 3.5 1.8 1.8 98 chr2L 16001478 intron beat-Ic + chr2L 16001527 intron beat-Ic + chr2L 16001576 intron beat-Ic + chr2L_5_16000001 chr2L_16000001 RAL-28 190 chr2L 16059956 16059980 chr2L 16060054 16060078 7 98 0.5 1.0 0.8 3.9 122 chr2L 16059956 intron beat-Ia + chr2L 16060017 intron beat-Ia + chr2L 16060078 intron beat-Ia + chr2L_7_16060001 chr2L_16060001 RAL-28 191 chr2L 16068739 16068763 chr2L 16068817 16068841 5 78 1.5 1.5 1.5 2.0 102 chr2L 16068739 intron beat-Ia + chr2L 16068790 intron beat-Ia + chr2L 16068841 intron beat-Ia + chr2L_5_16065001 chr2L_16065001 RAL-28 192 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 9 145889 21.5 10.0 15.8 0.5 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_9_16140001 chr2L_16140001 RAL-28 193 chr2L 16141178 16141191 chr2L 16146382 16146398 copia 5 5206 0.0 2.0 1.0 2.5 5220 chr2L 16141178 intergenic not near genes chr2L 16143788 intergenic not near genes chr2L 16146398 intergenic not near genes chr2L_5_16140001 chr2L_16140001 RAL-28 194 chr2L 9084336 9084339 chr2L 16217660 16217660 7 7133322 11.5 10.0 10.8 0.6 7133324 chr2L 9084336 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_7_12650001 chr2L_12650001 RAL-28 195 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 8 145889 21.5 10.0 15.8 0.5 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_8_16140001 chr2L_16140001 RAL-28 196 chr2L 16280254 16280285 chr2L 16281424 16281455 1360 9 1169 1.5 3.5 2.5 2.6 1201 chr2L 16280254 intron crp - chr2L 16280854 intron crp - chr2L 16281455 intron crp - chr2L_9_16280001 chr2L_16280001 RAL-28 197 chr2L 16363941 16363973 chr2L 16364187 16364219 4 245 0.5 0.0 0.2 3.3 278 chr2L 16363941 intergenic not near genes chr2L 16364080 intergenic not near genes chr2L 16364219 intergenic not near genes chr2L_4_16360001 chr2L_16360001 RAL-28 198 chr2L 16434108 16434117 chr2L 16434190 16434199 4 82 0.5 2.0 1.2 1.8 91 chr2L 16434108 intron CG5888 - chr2L 16434154 intron CG5888 - chr2L 16434199 intron CG5888 - chr2L_4_16430001 chr2L_16430001 RAL-28 199 chr2L 16504998 16505007 chr2L 16505099 16505117 4 108 0.0 1.0 0.5 2.7 119 chr2L 16504998 intron Tpr2 + chr2L 16505058 intron Tpr2 + chr2L 16505117 intron Tpr2 + chr2L_4_16505001 chr2L_16505001 RAL-28 200 chr2L 16592105 16592122 chr2L 16592309 16592323 4 204 2.0 3.5 2.8 1.1 218 chr2L 16592105 intron CG42389 + chr2L 16592214 intron CG42389 + chr2L 16592323 intron CG42389 + chr2L_4_16590001 chr2L_16590001 RAL-28 201 chr2L 16927467 16927499 chr2L 16927559 16927567 4 82 3.0 2.0 2.5 1.1 100 chr2L 16927467 intergenic not near genes chr2L 16927517 intergenic not near genes chr2L 16927567 intergenic not near genes chr2L_4_16925001 chr2L_16925001 RAL-28 202 chr2L 17000147 17000154 chr2L 17000262 17000276 4 120 0.5 2.0 1.2 1.8 129 chr2L 17000147 intergenic not near genes chr2L 17000212 intergenic not near genes chr2L 17000276 intergenic not near genes chr2L_4_17000001 chr2L_17000001 RAL-28 203 chr2L 17239040 17239053 chr2L 17239124 17239136 6 83 1.5 1.5 1.5 2.4 96 chr2L 17239040 intron beat-IIIc - chr2L 17239088 intron beat-IIIc - chr2L 17239136 intron beat-IIIc - chr2L_6_17235001 chr2L_17235001 RAL-28 204 chr2L 17242617 17242648 chr2L 17242700 17242730 9 80 1.5 2.5 2.0 3.0 113 chr2L 17242617 intron beat-IIIc - chr2L 17242674 intron beat-IIIc - chr2L 17242730 intron beat-IIIc - chr2L_9_17240001 chr2L_17240001 RAL-28 205 chr2L 17273195 17273223 chr2L 17277974 17278006 F-element 12 4782 6.0 3.0 4.5 2.2 4811 chr2L 17273195 intergenic not near genes chr2L 17275600 intergenic not near genes chr2L 17278006 intergenic not near genes chr2L_12_17275001 chr2L_17275001 RAL-28 206 chr2L 17449995 17450028 chr2L 17450091 17450124 4 96 1.5 1.0 1.2 1.8 129 chr2L 17449995 intron dl - chr2L 17450060 intron dl - chr2L 17450124 intron dl - chr2L_4_17450001 chr2L_17450001 RAL-28 207 chr2L 17579417 17579444 chr2L 17579579 17579611 10 163 3.0 1.0 2.0 3.3 194 chr2L 17579417 intergenic CR45698 + chr2L 17579514 5` UTR CR45698 + chr2L 17579611 5` UTR CR45698 + chr2L_10_17575001 chr2L_17575001 RAL-28 208 chr2L 17623672 17623699 chr2L 17623900 17623929 6 226 0.5 0.5 0.5 4.0 257 chr2L 17623672 intergenic not near genes chr2L 17623800 intergenic not near genes chr2L 17623929 intergenic not near genes chr2L_6_17620001 chr2L_17620001 RAL-28 209 chr2L 17632767 17632795 chr2L 17632851 17632879 16 84 3.0 5.0 4.0 3.2 112 chr2L 17632767 intergenic not near genes chr2L 17632823 intergenic not near genes chr2L 17632879 intergenic not near genes chr2L_16_17630001 chr2L_17630001 RAL-28 210 chr2L 17727870 17727881 chr2L 17729337 17729348 hobo 4 1467 1.0 3.0 2.0 1.3 1478 chr2L 17727870 intron CadN - chr2L 17728609 intron CadN - chr2L 17729348 intron CadN - chr2L_4_17725001 chr2L_17725001 RAL-28 211 chr2L 17755753 17755789 chr2L 17755840 17755876 7 87 2.5 2.0 2.2 2.2 123 chr2L 17755753 intron CadN - chr2L 17755814 intron CadN - chr2L 17755876 intron CadN - chr2L_7_17755001 chr2L_17755001 RAL-28 212 chr2L 17895589 17895612 chr2L 17895695 17895719 7 106 1.0 0.5 0.8 3.9 130 chr2L 17895589 intergenic not near genes chr2L 17895654 intergenic not near genes chr2L 17895719 intergenic not near genes chr2L_7_17895001 chr2L_17895001 RAL-28 213 chr2L 17911960 17911977 chr2L 17914138 17914155 pogo 4 2177 2.0 1.5 1.8 1.4 2195 chr2L 17911960 intergenic not near genes chr2L 17913058 intergenic not near genes chr2L 17914155 intergenic CG43271 - chr2L_4_17910001 chr2L_17910001 RAL-28 214 chr2L 18148831 18148855 chr2L 18148926 18148949 5 95 1.0 1.5 1.2 2.3 118 chr2L 18148831 intron Socs36E - chr2L 18148890 intron Socs36E - chr2L 18148949 intron Socs36E - chr2L_5_18145001 chr2L_18145001 RAL-28 215 chr2L 18169685 18169714 chr2L 18169789 18169819 9 105 2.0 2.0 2.0 3.0 134 chr2L 18169685 intron CG42750 - chr2L 18169752 intron CG42750 - chr2L 18169819 intron CG42750 - chr2L_9_18165001 chr2L_18165001 RAL-28 216 chr2L 18254821 18254837 chr2L 18254919 18254937 4 99 2.0 1.0 1.5 1.6 116 chr2L 18254821 intron CG42750 - chr2L 18254879 intron CG42750 - chr2L 18254937 intron CG42750 - chr2L_4_18250001 chr2L_18250001 RAL-28 217 chr2L 18274042 18274064 chr2L 18274128 18274150 7 84 2.0 2.0 2.0 2.3 108 chr2L 18274042 intron CG42750 - chr2L 18274096 intron CG42750 - chr2L 18274150 intron CG42750 - chr2L_7_18270001 chr2L_18270001 RAL-28 218 chr2L 18303976 18304001 chr2L 18304065 18304092 6 90 3.0 1.0 2.0 2.0 116 chr2L 18303976 intergenic not near genes chr2L 18304034 intergenic not near genes chr2L 18304092 intergenic not near genes chr2L_6_18300001 chr2L_18300001 RAL-28 219 chr2L 18442351 18442366 chr2L 18442430 18442432 4 74 0.5 6.5 3.5 0.9 81 chr2L 18442351 3` UTR RpS26 - chr2L 18442392 3` UTR RpS26 - chr2L 18442432 3` UTR RpS26 - chr2L_4_18440001 chr2L_18440001 RAL-28 220 chr2L 18449389 18449419 chr2L 18449490 18449520 6 101 0.5 1.0 0.8 3.3 131 chr2L 18449389 intergenic bsf -,ncm - chr2L 18449454 intergenic bsf -,ncm - chr2L 18449520 3` UTR bsf - chr2L_6_18445001 chr2L_18445001 RAL-28 221 chr2L 18464793 18464801 chr2L 18464876 18464884 4 82 1.5 2.0 1.8 1.4 91 chr2L 18464793 intron let-7-C + chr2L 18464838 intron let-7-C + chr2L 18464884 intron let-7-C + chr2L_4_18460001 chr2L_18460001 RAL-28 222 chr2L 18584753 18584774 chr2L 18584836 18584859 5 84 0.5 2.5 1.5 2.0 106 chr2L 18584753 intron Pde11 - chr2L 18584806 intron Pde11 - chr2L 18584859 intron Pde11 - chr2L_5_18580001 chr2L_18580001 RAL-28 223 chr2L 18812558 18812590 chr2L 18812820 18812852 7 262 0.5 0.5 0.5 4.7 294 chr2L 18812558 intergenic CG17325 +,CG42305 + chr2L 18812705 5` UTR,5` UTR CG17325 +,CG42305 + chr2L 18812852 5` UTR,5` UTR CG17325 +,CG42305 + chr2L_7_18810001 chr2L_18810001 RAL-28 224 chr2L 18883851 18883888 chr2L 18883933 18883970 6 78 2.5 2.5 2.5 1.7 119 chr2L 18883851 intergenic not near genes chr2L 18883910 intergenic not near genes chr2L 18883970 intergenic not near genes chr2L_6_18880001 chr2L_18880001 RAL-28 225 chr2L 18943160 18943183 chr2L 18943242 18943267 4 82 1.5 3.0 2.2 1.2 107 chr2L 18943160 intron ssp3 - chr2L 18943214 intron ssp3 - chr2L 18943267 intron ssp3 - chr2L_4_18940001 chr2L_18940001 RAL-28 226 chr2L 18981754 18981776 chr2L 18981830 18981853 6 75 2.5 2.0 2.2 1.9 99 chr2L 18981754 intron Swip-1 - chr2L 18981804 intron Swip-1 - chr2L 18981853 intron Swip-1 - chr2L_6_18980001 chr2L_18980001 RAL-28 227 chr2L 18990314 18990340 chr2L 18990425 18990451 4 110 0.5 1.0 0.8 2.2 137 chr2L 18990314 intergenic CG15170 - chr2L 18990382 intergenic CG15170 - chr2L 18990451 intergenic CG15170 - chr2L_4_18990001 chr2L_18990001 RAL-28 228 chr2L 19024096 19024097 chr2L 21768291 21768293 8 2744195 10.0 8.5 9.2 0.8 2744197 chr2L 19024096 3` UTR CR43700 - chr2L 20396194 intron CG10947 - chr2L 21768293 intron CG31612 - chr2L_8_20395001 chr2L_20395001 RAL-28 229 chr2L 19147385 19147402 chr2L 19154420 19154437 297 6 7035 0.0 2.0 1.0 3.0 7052 chr2L 19147385 intron brat + chr2L 19150911 intron brat + chr2L 19154437 intron brat + chr2L_6_19150001 chr2L_19150001 RAL-28 230 chr2L 19192265 19192298 chr2L 19192369 19192393 9 101 1.5 1.0 1.2 4.1 128 chr2L 19192265 intron drl + chr2L 19192329 intron drl + chr2L 19192393 intron drl + chr2L_9_19190001 chr2L_19190001 RAL-28 231 chr2L 19237303 19237338 chr2L 19237403 19237438 5 99 1.0 2.5 1.8 1.8 135 chr2L 19237303 intergenic not near genes chr2L 19237370 intergenic not near genes chr2L 19237438 intergenic not near genes chr2L_5_19235001 chr2L_19235001 RAL-28 232 chr2L 19345016 19345041 chr2L 19357225 19357250 blood 6 12209 4.0 1.5 2.8 1.6 12234 chr2L 19345016 intron dnt - chr2L 19351133 intron dnt - chr2L 19357250 intron dnt - chr2L_6_19350001 chr2L_19350001 RAL-28 233 chr2L 19357548 19357565 chr2L 19357638 19357655 8 90 4.5 2.5 3.5 1.8 107 chr2L 19357548 intron dnt - chr2L 19357602 intron dnt - chr2L 19357655 intron dnt - chr2L_8_19355001 chr2L_19355001 RAL-28 234 chr2L 19389669 19389691 chr2L 19389745 19389767 4 76 1.5 4.5 3.0 1.0 98 chr2L 19389669 intron CG17549 - chr2L 19389718 intron CG17549 - chr2L 19389767 intron CG17549 - chr2L_4_19385001 chr2L_19385001 RAL-28 235 chr2L 19393963 19393992 chr2L 19394076 19394106 6 113 1.5 1.0 1.2 2.7 143 chr2L 19393963 intron CG17544 - chr2L 19394034 intron CG17544 - chr2L 19394106 intron CG17544 - chr2L_6_19390001 chr2L_19390001 RAL-28 236 chr2L 19407723 19407731 chr2L 19407920 19407927 4 196 1.5 3.0 2.2 1.2 204 chr2L 19407723 intron Pax - chr2L 19407825 intron Pax - chr2L 19407927 intron Pax - chr2L_4_19405001 chr2L_19405001 RAL-28 237 chr2L 19441066 19441083 chr2L 19441143 19441159 9 77 2.0 2.0 2.0 3.0 93 chr2L 19441066 intron CG10237 - chr2L 19441112 intron CG10237 - chr2L 19441159 5` UTR CG10237 - chr2L_9_19440001 chr2L_19440001 RAL-28 238 chr2L 19544599 19544627 chr2L 19544668 19544675 7 58 2.0 6.0 4.0 1.4 76 chr2L 19544599 exon ref(2)P + chr2L 19544637 exon ref(2)P + chr2L 19544675 exon ref(2)P + chr2L_7_19540001 chr2L_19540001 RAL-28 239 chr2L 19597272 19597306 chr2L 19597505 19597539 6 233 1.5 2.0 1.8 2.1 267 chr2L 19597272 intron Lar + chr2L 19597406 intron Lar + chr2L 19597539 intron Lar + chr2L_6_19595001 chr2L_19595001 RAL-28 240 chr2L 19605531 19605546 chr2L 19605607 19605618 6 75 5.0 2.5 3.8 1.2 87 chr2L 19605531 intron Lar + chr2L 19605574 intron Lar + chr2L 19605618 intron Lar + chr2L_6_19605001 chr2L_19605001 RAL-28 241 chr2L 19605550 19605558 chr2L 19605605 19605636 4 70 3.0 2.5 2.8 1.1 86 chr2L 19605550 intron Lar + chr2L 19605593 intron Lar + chr2L 19605636 intron Lar + chr2L_4_19605001 chr2L_19605001 RAL-28 242 chr2L 19620097 19620102 chr2L 19621086 19621091 jockey 4 988 8.5 3.0 5.8 0.6 994 chr2L 19620097 intron Lar + chr2L 19620594 intron Lar + chr2L 19621091 intron Lar + chr2L_4_19620001 chr2L_19620001 RAL-28 243 chr2L 19620104 19620130 chr2L 19621084 19621119 jockey 8 986 4.5 3.0 3.8 1.7 1015 chr2L 19620104 intron Lar + chr2L 19620612 intron Lar + chr2L 19621119 intron Lar + chr2L_8_19620001 chr2L_19620001 RAL-28 244 chr2L 19652574 19652603 chr2L 19674007 19674037 opus 4 21434 3.0 1.0 2.0 1.3 21463 chr2L 19652574 intron Lar + chr2L 19663306 intron Lar + chr2L 19674037 intron Lar + chr2L_4_19660001 chr2L_19660001 RAL-28 245 chr2L 19821804 19821819 chr2L 19821881 19821896 5 77 0.0 0.5 0.2 4.2 92 chr2L 19821804 intron sick + chr2L 19821850 intron sick + chr2L 19821896 intron sick + chr2L_5_19820001 chr2L_19820001 RAL-28 246 chr2L 19898963 19898993 chr2L 19899103 19899133 10 136 2.5 1.5 2.0 3.3 170 chr2L 19898963 intron sick + chr2L 19899048 intron sick + chr2L 19899133 intron sick + chr2L_10_19895001 chr2L_19895001 RAL-28 247 chr2L 19947709 19947731 chr2L 19947795 19947817 4 86 1.0 1.0 1.0 2.0 108 chr2L 19947709 intron sick + chr2L 19947763 intron sick + chr2L 19947817 intron sick + chr2L_4_19945001 chr2L_19945001 RAL-28 248 chr2L 20079517 20079544 chr2L 20079638 20079665 5 120 1.0 0.5 0.8 2.8 148 chr2L 20079517 intron,intron neb +,fok - chr2L 20079591 intron,intron neb +,fok - chr2L 20079665 intron,intron neb +,fok - chr2L_5_20075001 chr2L_20075001 RAL-28 249 chr2L 20272128 20272142 chr2L 20282839 20282853 copia 4 10710 2.0 3.0 2.5 1.1 10725 chr2L 20272128 intergenic not near genes chr2L 20277490 intergenic not near genes chr2L 20282853 intergenic not near genes chr2L_4_20275001 chr2L_20275001 RAL-28 250 chr2L 20296510 20296538 chr2L 20296590 20296619 6 80 1.0 3.5 2.2 1.9 109 chr2L 20296510 intergenic CR43414 - chr2L 20296564 intergenic CR43414 - chr2L 20296619 intergenic CR43414 - chr2L_6_20295001 chr2L_20295001 RAL-28 251 chr2L 20303162 20303182 chr2L 20310630 20310649 blood 5 7467 2.0 0.0 1.0 2.5 7487 chr2L 20303162 intergenic not near genes chr2L 20306906 intergenic not near genes chr2L 20310649 intergenic not near genes chr2L_5_20305001 chr2L_20305001 RAL-28 252 chr2L 20498692 20498705 chr2L 20498791 20498804 8 99 2.0 5.0 3.5 1.8 112 chr2L 20498692 intergenic not near genes chr2L 20498748 intergenic not near genes chr2L 20498804 intergenic not near genes chr2L_8_20495001 chr2L_20495001 RAL-28 253 chr2L 20553185 20553219 chr2L 20553260 20553295 6 76 0.5 3.5 2.0 2.0 110 chr2L 20553185 intergenic not near genes chr2L 20553240 intergenic not near genes chr2L 20553295 intergenic not near genes chr2L_6_20550001 chr2L_20550001 RAL-28 254 chr2L 20589496 20589519 chr2L 20589573 20589596 5 77 2.5 2.0 2.2 1.6 100 chr2L 20589496 intron CR44909 - chr2L 20589546 intron CR44909 - chr2L 20589596 intron CR44909 - chr2L_5_20585001 chr2L_20585001 RAL-28 255 chr2L 20597089 20597119 chr2L 20597165 20597196 5 75 0.0 3.5 1.8 1.8 107 chr2L 20597089 intron CR44909 - chr2L 20597142 intron CR44909 - chr2L 20597196 intron CR44909 - chr2L_5_20595001 chr2L_20595001 RAL-28 256 chr2L 20807111 20807135 chr2L 20807194 20807218 7 80 1.5 3.0 2.2 2.2 107 chr2L 20807111 intron CG9328 + chr2L 20807164 intron CG9328 + chr2L 20807218 intron CG9328 + chr2L_7_20805001 chr2L_20805001 RAL-28 257 chr2L 20840025 20840047 chr2L 20840237 20840259 8 212 2.5 2.0 2.2 2.5 234 chr2L 20840025 intergenic not near genes chr2L 20840142 intergenic not near genes chr2L 20840259 intergenic CG31676 + chr2L_8_20840001 chr2L_20840001 RAL-28 258 chr2L 20852289 20852440 chr2L 20852368 20852526 11 78 4.5 4.0 4.2 2.1 237 chr2L 20852289 intergenic twit + chr2L 20852408 intergenic twit + chr2L 20852526 intergenic twit + chr2L_11_20850001 chr2L_20850001 RAL-28 259 chr2L 20976642 20976669 chr2L 20981457 20981484 X-element 4 4815 2.0 2.5 2.2 1.2 4842 chr2L 20976642 intron CG42238 - chr2L 20979063 intron CG42238 - chr2L 20981484 intron CG42238 - chr2L_4_20975001 chr2L_20975001 RAL-28 260 chr2L 21020272 21020309 chr2L 21023949 21023986 NOF 13 3676 2.0 0.5 1.2 5.9 3714 chr2L 21020272 intron CG42238 - chr2L 21022129 intron CG42238 - chr2L 21023986 intron CG42238 - chr2L_13_21020001 chr2L_21020001 RAL-28 261 chr2L 21034140 21034169 chr2L 21034220 21034246 6 80 0.5 1.0 0.8 3.3 106 chr2L 21034140 intron CG42238 - chr2L 21034193 intron CG42238 - chr2L 21034246 intron CG42238 - chr2L_6_21030001 chr2L_21030001 RAL-28 262 chr2L 21113683 21113715 chr2L 21113776 21113808 8 92 1.5 1.5 1.5 3.2 125 chr2L 21113683 intron Nhe2 + chr2L 21113746 intron Nhe2 + chr2L 21113808 intron Nhe2 + chr2L_8_21110001 chr2L_21110001 RAL-28 263 chr2L 21347557 21347578 chr2L 21355029 21355046 blood 4 7471 1.0 1.0 1.0 2.0 7489 chr2L 21347557 intron Tsp39D + chr2L 21351302 intron Tsp39D + chr2L 21355046 intron Tsp39D + chr2L_4_21350001 chr2L_21350001 RAL-28 264 chr2L 21836400 21836427 chr2L 21836488 21836516 7 89 1.0 2.0 1.5 2.8 116 chr2L 21836400 3` UTR tsh + chr2L 21836458 3` UTR tsh + chr2L 21836516 3` UTR tsh + chr2L_7_21835001 chr2L_21835001 RAL-28 265 chr2L 21855475 21855509 chr2L 21855561 21855596 5 86 0.5 0.5 0.5 3.3 121 chr2L 21855475 intron CR44917 + chr2L 21855536 intron CR44917 + chr2L 21855596 intron CR44917 + chr2L_5_21855001 chr2L_21855001 RAL-28 266 chr2L 21859333 21859341 chr2L 21859401 21859419 5 77 1.5 1.0 1.2 2.3 86 chr2L 21859333 intron CR44917 + chr2L 21859376 intron CR44917 + chr2L 21859419 intron CR44917 + chr2L_5_21855001 chr2L_21855001 RAL-28 267 chr2L 21910449 21910474 chr2L 21911655 21911680 6 1206 1.0 0.0 0.5 4.0 1231 chr2L 21910449 intergenic not near genes chr2L 21911064 intergenic not near genes chr2L 21911680 intergenic not near genes chr2L_6_21910001 chr2L_21910001 RAL-28 268 chr2L 21981684 21981715 chr2L 21990849 21990876 roo 6 9163 3.0 1.0 2.0 2.0 9192 chr2L 21981684 exon CG2528 - chr2L 21986280 intron CG2528 - chr2L 21990876 exon CG2528 - chr2L_6_21985001 chr2L_21985001 RAL-28 269 chr2L 22101487 22101508 chr2L 22101800 22101820 7 313 2.5 1.0 1.8 2.5 333 chr2L 22101487 intergenic not near genes chr2L 22101654 intergenic not near genes chr2L 22101820 intergenic not near genes chr2L_7_22100001 chr2L_22100001 RAL-28 270 chr2L 22325309 22325335 chr2L 22325381 22325412 8 76 0.5 4.0 2.2 2.5 103 chr2L 22325309 intron CG17018 + chr2L 22325360 intron CG17018 + chr2L 22325412 intron CG17018 + chr2L_8_22325001 chr2L_22325001 RAL-28 271 chr2L 22776419 22776447 chr2L 22778208 22778236 S-element 4 1788 0.0 0.5 0.2 3.3 1817 chr2L 22776419 intergenic not near genes chr2L 22777328 intergenic not near genes chr2L 22778236 intergenic not near genes chr2L_4_22775001 chr2L_22775001 RAL-28 272 chr2L 23169717 23169725 chr2L 23169936 23169942 4 218 4.5 0.5 2.5 1.1 225 chr2L 23169717 intron CG12567 - chr2L 23169830 intron CG12567 - chr2L 23169942 intron CG12567 - chr2L_4_23165001 chr2L_23165001 RAL-28 273 chr2R 529327 529354 chr2R 537952 537979 Max-element 5 8624 0.5 1.5 1.0 2.5 8652 chr2R 529327 intron CG40378 + chr2R 533653 intron CG40378 + chr2R 537979 intron CG40378 + chr2R_5_530001 chr2R_530001 RAL-28 274 chr2R 552759 552787 chr2R 553977 553990 1360 8 1213 1.0 2.0 1.5 3.2 1231 chr2R 552759 intron CG40378 + chr2R 553374 intron CG40378 + chr2R 553990 intron CG40378 + chr2R_8_550001 chr2R_550001 RAL-28 275 chr2R 3144093 3144102 chr2R 3393369 3393380 Doc 4 249278 4.0 1.0 2.5 1.1 249287 chr2R 3144093 intron CG42596 + chr2R 3268736 intergenic not near genes chr2R 3393380 intergenic not near genes chr2R_4_3265001 chr2R_3265001 RAL-28 276 chr2R 3291693 3291958 chr2R 3914844 3915126 4 623164 10.5 8.0 9.2 0.4 623433 chr2R 3291693 intergenic not near genes chr2R 3603410 intergenic not near genes chr2R 3915126 intron uex - chr2R_4_3600001 chr2R_3600001 RAL-28 277 chr2R 3818933 3818943 chr2R 3819049 3819058 8 116 9.0 1.0 5.0 1.3 125 chr2R 3818933 intergenic not near genes chr2R 3818996 intergenic not near genes chr2R 3819058 intergenic not near genes chr2R_8_3815001 chr2R_3815001 RAL-28 278 chr2R 4312959 4312981 chr2R 4313042 4313063 5 83 1.0 3.5 2.2 1.6 104 chr2R 4312959 intergenic not near genes chr2R 4313011 intergenic not near genes chr2R 4313063 intergenic not near genes chr2R_5_4310001 chr2R_4310001 RAL-28 279 chr2R 4621320 4621342 chr2R 4621858 4621879 4 538 1.0 0.5 0.8 2.2 559 chr2R 4621320 3` UTR CR44101 - chr2R 4621600 3` UTR CR44101 - chr2R 4621879 3` UTR CR44101 - chr2R_4_4620001 chr2R_4620001 RAL-28 280 chr2R 4622953 4622986 chr2R 4624112 4624144 1360 7 1159 3.0 2.5 2.8 1.8 1191 chr2R 4622953 intergenic CR44101 - chr2R 4623548 intergenic not near genes chr2R 4624144 intergenic not near genes chr2R_7_4620001 chr2R_4620001 RAL-28 281 chr2R 4750351 4750368 chr2R 4751506 4751524 1360 4 1156 1.0 1.5 1.2 1.8 1173 chr2R 4750351 intron conu + chr2R 4750938 intron conu + chr2R 4751524 intron conu + chr2R_4_4750001 chr2R_4750001 RAL-28 282 chr2R 5008890 5008896 chr2R 5009946 5009965 4 1066 0.0 1.5 0.8 2.2 1075 chr2R 5008890 intron Ir41a + chr2R 5009428 intron Ir41a + chr2R 5009965 intron Ir41a + chr2R_4_5005001 chr2R_5005001 RAL-28 283 chr2R 5028517 5028537 chr2R 5028705 5028720 5 190 4.5 1.0 2.8 1.3 203 chr2R 5028517 intergenic not near genes chr2R 5028618 intergenic not near genes chr2R 5028720 intergenic not near genes chr2R_5_5025001 chr2R_5025001 RAL-28 284 chr2R 5418003 5418023 chr2R 5420626 5420655 Burdock 4 2628 2.0 0.5 1.2 1.8 2652 chr2R 5418003 intron laccase2 + chr2R 5419329 intron laccase2 + chr2R 5420655 intron laccase2 + chr2R_4_5415001 chr2R_5415001 RAL-28 285 chr2R 5472377 5472386 chr2R 5472472 5472480 4 94 1.0 3.5 2.2 1.2 103 chr2R 5472377 intron CG30440 - chr2R 5472428 intron CG30440 - chr2R 5472480 intron CG30440 - chr2R_4_5470001 chr2R_5470001 RAL-28 286 chr2R 5603194 5603214 chr2R 5603273 5603296 6 82 1.5 0.0 0.8 3.3 102 chr2R 5603194 intergenic Fis1 - chr2R 5603245 intergenic Fis1 - chr2R 5603296 intergenic Fis1 - chr2R_6_5600001 chr2R_5600001 RAL-28 287 chr2R 5861290 5861321 chr2R 5861411 5861442 5 118 3.0 2.5 2.8 1.3 152 chr2R 5861290 intergenic dpr12 + chr2R 5861366 intergenic not near genes chr2R 5861442 intergenic not near genes chr2R_5_5860001 chr2R_5860001 RAL-28 288 chr2R 5869279 5869308 chr2R 5874351 5874382 flea 8 5075 1.5 1.0 1.2 3.6 5103 chr2R 5869279 intergenic not near genes chr2R 5871830 intergenic not near genes chr2R 5874382 intergenic not near genes chr2R_8_5870001 chr2R_5870001 RAL-28 289 chr2R 6016796 6016819 chr2R 6016870 6016903 4 81 0.0 1.5 0.8 2.2 107 chr2R 6016796 intergenic not near genes chr2R 6016850 intergenic not near genes chr2R 6016903 intergenic not near genes chr2R_4_6015001 chr2R_6015001 RAL-28 290 chr2R 6096720 6096740 chr2R 6101918 6101938 BS 7 5194 6.5 2.5 4.5 1.3 5218 chr2R 6096720 intron EcR - chr2R 6099329 intron EcR - chr2R 6101938 intron EcR - chr2R_7_6095001 chr2R_6095001 RAL-28 291 chr2R 6096742 6096749 chr2R 6101915 6101947 BS 4 5185 2.0 2.0 2.0 1.3 5205 chr2R 6096742 intron EcR - chr2R 6099344 intron EcR - chr2R 6101947 intron EcR - chr2R_4_6095001 chr2R_6095001 RAL-28 292 chr2R 6494524 6494551 chr2R 6499286 6499313 F-element 6 4762 1.0 0.5 0.8 3.3 4789 chr2R 6494524 intergenic not near genes chr2R 6496918 intergenic not near genes chr2R 6499313 intergenic not near genes chr2R_6_6495001 chr2R_6495001 RAL-28 293 chr2R 6530547 6530566 chr2R 6530679 6530699 7 132 0.0 2.5 1.2 3.2 152 chr2R 6530547 intron jing + chr2R 6530623 intron jing + chr2R 6530699 intron jing + chr2R_7_6530001 chr2R_6530001 RAL-28 294 chr2R 6538380 6538407 chr2R 6538457 6538484 4 78 3.0 1.0 2.0 1.3 104 chr2R 6538380 intron jing + chr2R 6538432 intron jing + chr2R 6538484 intron jing + chr2R_4_6535001 chr2R_6535001 RAL-28 295 chr2R 6876227 6876247 chr2R 6876309 6876327 6 81 0.5 2.5 1.5 2.4 100 chr2R 6876227 intron,intron CR44169 +,Spn42Da - chr2R 6876277 5` UTR,intron CR44169 +,Spn42Da - chr2R 6876327 5` UTR,intron CR44169 +,Spn42Da - chr2R_6_6875001 chr2R_6875001 RAL-28 296 chr2R 7101416 7101427 chr2R 7101493 7101507 6 76 3.5 3.5 3.5 1.3 91 chr2R 7101416 intron esn + chr2R 7101462 intron esn + chr2R 7101507 intron esn + chr2R_6_7100001 chr2R_7100001 RAL-28 297 chr2R 7101428 7101443 chr2R 7101491 7101523 4 75 2.5 3.0 2.8 1.1 95 chr2R 7101428 intron esn + chr2R 7101476 intron esn + chr2R 7101523 intron esn + chr2R_4_7100001 chr2R_7100001 RAL-28 298 chr2R 7209848 7209872 chr2R 7217596 7217620 roo 4 7748 0.5 3.5 2.0 1.3 7772 chr2R 7209848 intron pk + chr2R 7213734 intron pk + chr2R 7217620 intron pk + chr2R_4_7210001 chr2R_7210001 RAL-28 299 chr2R 7235821 7235853 chr2R 7240913 7240942 jockey 7 5091 3.0 2.0 2.5 2.0 5121 chr2R 7235821 intergenic not near genes chr2R 7238382 intergenic not near genes chr2R 7240942 intergenic not near genes chr2R_7_7235001 chr2R_7235001 RAL-28 300 chr2R 7395236 7395247 chr2R 7395312 7395319 4 75 3.0 4.0 3.5 0.9 83 chr2R 7395236 intron,5` UTR CG1707 -,CR44201 + chr2R 7395278 intron,5` UTR CG1707 -,CR44201 + chr2R 7395319 intron,5` UTR CG1707 -,CR44201 + chr2R_4_7395001 chr2R_7395001 RAL-28 301 chr2R 7417903 7418169 chr2R 7417989 7418246 6 78 0.0 1.5 0.8 3.3 343 chr2R 7417903 intergenic not near genes chr2R 7418074 intergenic not near genes chr2R 7418246 intergenic not near genes chr2R_6_7415001 chr2R_7415001 RAL-28 302 chr2R 7498115 7498134 chr2R 7501763 7501783 7 3648 19.0 24.0 21.5 0.3 3668 chr2R 7498115 exon dpa - chr2R 7499949 5` UTR dpa - chr2R 7501783 intron didum + chr2R_7_7495001 chr2R_7495001 RAL-28 303 chr2R 7608424 7608432 chr2R 7613626 7613635 I-element 4 5202 1.5 2.0 1.8 1.4 5211 chr2R 7608424 intron CG1358 - chr2R 7611030 intron CG1358 - chr2R 7613635 intron CG1358 - chr2R_4_7610001 chr2R_7610001 RAL-28 304 chr2R 7815675 7815700 chr2R 7822144 7822168 Burdock 5 6469 2.0 2.5 2.2 1.6 6493 chr2R 7815675 intergenic CG1882 + chr2R 7818922 intergenic not near genes chr2R 7822168 3` UTR cathD - chr2R_5_7815001 chr2R_7815001 RAL-28 305 chr2R 7869196 7869209 chr2R 7873979 7873993 Doc 7 4785 3.0 4.5 3.8 1.5 4797 chr2R 7869196 intron Dgk - chr2R 7871594 intron Dgk - chr2R 7873993 intron Dgk - chr2R_7_7870001 chr2R_7870001 RAL-28 306 chr2R 7946890 7946919 chr2R 7957097 7957126 5 10207 13.0 18.0 15.5 0.3 10236 chr2R 7946890 intron,exon CG14764 -,CG34431 + chr2R 7952008 intron CG14764 - chr2R 7957126 exon CG2906 + chr2R_5_7950001 chr2R_7950001 RAL-28 307 chr2R 8015656 8015684 chr2R 8017669 8017702 5 2020 2.0 2.0 2.0 1.7 2046 chr2R 8015656 intergenic mir-4981 + chr2R 8016679 intergenic not near genes chr2R 8017702 intergenic not near genes chr2R_5_8015001 chr2R_8015001 RAL-28 308 chr2R 8067065 8067096 chr2R 8067149 8067179 5 84 0.5 1.5 1.0 2.5 114 chr2R 8067065 intron CG17977 - chr2R 8067122 intron CG17977 - chr2R 8067179 exon CG17977 - chr2R_5_8065001 chr2R_8065001 RAL-28 309 chr2R 8089267 8089277 chr2R 8089352 8089363 4 86 2.0 4.0 3.0 1.0 96 chr2R 8089267 3` UTR sut2 + chr2R 8089315 intergenic sut2 +,sut3 + chr2R 8089363 intergenic sut2 +,sut3 + chr2R_4_8085001 chr2R_8085001 RAL-28 310 chr2R 8105932 8105964 chr2R 8106023 8106046 8 90 1.5 1.0 1.2 3.6 114 chr2R 8105932 5` UTR Cul4 - chr2R 8105989 intron Cul4 - chr2R 8106046 5` UTR Cul4 - chr2R_8_8105001 chr2R_8105001 RAL-28 311 chr2R 8155581 8155612 chr2R 8155669 8155701 5 89 0.5 1.0 0.8 2.8 120 chr2R 8155581 intron,intron Lpin -,kermit - chr2R 8155641 intron,intron Lpin -,kermit - chr2R 8155701 intron,intron Lpin -,kermit - chr2R_5_8155001 chr2R_8155001 RAL-28 312 chr2R 8159164 8159182 chr2R 8159654 8159678 6 494 1.5 1.0 1.2 2.7 514 chr2R 8159164 intergenic CG8708 - chr2R 8159421 3` UTR CG8708 - chr2R 8159678 exon CG8708 - chr2R_6_8155001 chr2R_8155001 RAL-28 313 chr2R 8160936 8160947 chr2R 8161026 8161037 1360 6 89 6.0 6.0 6.0 0.9 101 chr2R 8160936 intron CG8708 - chr2R 8160986 intron CG8708 - chr2R 8161037 intron CG8708 - chr2R_6_8160001 chr2R_8160001 RAL-28 314 chr2R 8249563 8249589 chr2R 8249645 8249671 4 82 3.0 0.0 1.5 1.6 108 chr2R 8249563 5` UTR CG44439 - chr2R 8249617 intergenic CG44439 - chr2R 8249671 intergenic CG44439 - chr2R_4_8245001 chr2R_8245001 RAL-28 315 chr2R 8330861 8330891 chr2R 8331347 8331377 roo 9 485 1.0 2.5 1.8 3.2 516 chr2R 8330861 intron pdm3 + chr2R 8331119 intron pdm3 + chr2R 8331377 intron pdm3 + chr2R_9_8330001 chr2R_8330001 RAL-28 316 chr2R 8508765 8508774 chr2R 8508846 8508856 5 81 2.0 4.5 3.2 1.2 91 chr2R 8508765 intron mtt - chr2R 8508810 intron mtt - chr2R 8508856 intron mtt - chr2R_5_8505001 chr2R_8505001 RAL-28 317 chr2R 8615772 8615808 chr2R 8615885 8615921 6 112 3.0 0.5 1.8 2.1 149 chr2R 8615772 intron Cirl + chr2R 8615846 intron Cirl + chr2R 8615921 5` UTR Cirl + chr2R_6_8615001 chr2R_8615001 RAL-28 318 chr2R 8691139 8691150 chr2R 8691601 8691616 4 466 1.0 1.5 1.2 1.8 477 chr2R 8691139 intergenic Jon44E + chr2R 8691378 intergenic Jon44E + chr2R 8691616 exon Jon44E + chr2R_4_8690001 chr2R_8690001 RAL-28 319 chr2R 8722781 8722791 chr2R 8723008 8723032 pogo 6 236 4.0 5.5 4.8 1.0 251 chr2R 8722781 intron CG14767 - chr2R 8722906 intron CG14767 - chr2R 8723032 intron CG14767 - chr2R_6_8720001 chr2R_8720001 RAL-28 320 chr2R 8789470 8789489 chr2R 8789544 8789566 7 77 2.5 3.5 3.0 1.8 96 chr2R 8789470 intergenic not near genes chr2R 8789518 intergenic not near genes chr2R 8789566 intergenic not near genes chr2R_7_8785001 chr2R_8785001 RAL-28 321 chr2R 8801324 8801357 chr2R 8801414 8801446 6 89 2.0 0.5 1.2 2.7 122 chr2R 8801324 intron sns + chr2R 8801385 intron sns + chr2R 8801446 intron sns + chr2R_6_8800001 chr2R_8800001 RAL-28 322 chr2R 8846180 8846202 chr2R 8846256 8846278 5 76 4.0 3.0 3.5 1.1 98 chr2R 8846180 intron sns + chr2R 8846229 intron sns + chr2R 8846278 intron sns + chr2R_5_8845001 chr2R_8845001 RAL-28 323 chr2R 9062022 9062049 chr2R 9062200 9062227 7 178 1.5 2.5 2.0 2.3 205 chr2R 9062022 intergenic CG8197 -,ana + chr2R 9062124 intergenic ana +,CG8197 - chr2R 9062227 intergenic ana +,CG8197 - chr2R_7_9060001 chr2R_9060001 RAL-28 324 chr2R 9065913 9065928 chr2R 9065995 9066010 5 79 4.0 3.0 3.5 1.1 97 chr2R 9065913 intron ana + chr2R 9065962 intron ana + chr2R 9066010 intron ana + chr2R_5_9065001 chr2R_9065001 RAL-28 325 chr2R 9212699 9212709 chr2R 9213181 9213195 roo 8 484 5.5 3.5 4.5 1.5 496 chr2R 9212699 intergenic CR45309 + chr2R 9212947 intergenic CR45309 + chr2R 9213195 5` UTR CR45309 + chr2R_8_9210001 chr2R_9210001 RAL-28 326 chr2R 9330894 9330915 chr2R 9330987 9331008 4 93 1.5 0.0 0.8 2.2 114 chr2R 9330894 intron,intron CG13739 -,CG13954 - chr2R 9330951 intron,intron CG13739 -,CG13954 - chr2R 9331008 intron,intron CG13739 -,CG13954 - chr2R_4_9330001 chr2R_9330001 RAL-28 327 chr2R 9556893 9556919 chr2R 9556967 9556997 5 77 1.5 1.0 1.2 2.3 104 chr2R 9556893 intergenic not near genes chr2R 9556945 intergenic not near genes chr2R 9556997 intergenic not near genes chr2R_5_9555001 chr2R_9555001 RAL-28 328 chr2R 9790095 9790108 chr2R 9790162 9790185 9 75 4.0 6.0 5.0 1.5 90 chr2R 9790095 intron,5` UTR CG1688 -,CR44208 + chr2R 9790140 intron,5` UTR CG1688 -,CR44208 + chr2R 9790185 intron,5` UTR CG1688 -,CR44208 + chr2R_9_9790001 chr2R_9790001 RAL-28 329 chr2R 9862762 9862788 chr2R 9862836 9862864 7 75 1.5 1.5 1.5 2.8 102 chr2R 9862762 intergenic not near genes chr2R 9862813 intergenic not near genes chr2R 9862864 intergenic not near genes chr2R_7_9860001 chr2R_9860001 RAL-28 330 chr2R 10017655 10017669 chr2R 10017733 10017746 6 77 3.0 2.5 2.8 1.6 91 chr2R 10017655 intron Pka-R2 - chr2R 10017700 intron Pka-R2 - chr2R 10017746 intron Pka-R2 - chr2R_6_10015001 chr2R_10015001 RAL-28 331 chr2R 10169560 10169561 chr2R 10169628 10169641 4 76 1.5 4.5 3.0 1.0 81 chr2R 10169560 intron KCNQ - chr2R 10169600 intron KCNQ - chr2R 10169641 intron KCNQ - chr2R_4_10165001 chr2R_10165001 RAL-28 332 chr2R 10313307 10313337 chr2R 10313401 10313431 6 94 0.0 1.5 0.8 3.3 124 chr2R 10313307 intergenic not near genes chr2R 10313369 intergenic not near genes chr2R 10313431 intergenic Ndg + chr2R_6_10310001 chr2R_10310001 RAL-28 333 chr2R 10318518 10318538 chr2R 10318604 10318624 6 86 5.5 2.5 4.0 1.2 106 chr2R 10318518 intron Ndg + chr2R 10318571 intron Ndg + chr2R 10318624 intron Ndg + chr2R_6_10315001 chr2R_10315001 RAL-28 334 chr2R 10352684 10352697 chr2R 10352761 10352770 4 76 2.5 0.0 1.2 1.8 86 chr2R 10352684 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352727 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352770 intron,exon,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R_4_10350001 chr2R_10350001 RAL-28 335 chr2R 10368977 10368989 chr2R 10369065 10369072 5 85 6.0 1.5 3.8 1.0 95 chr2R 10368977 intron CG42732 - chr2R 10369024 intron CG42732 - chr2R 10369072 intron CG42732 - chr2R_5_10365001 chr2R_10365001 RAL-28 336 chr2R 10368996 10369010 chr2R 10369064 10369098 6 81 2.0 1.5 1.8 2.1 102 chr2R 10368996 intron CG42732 - chr2R 10369047 intron CG42732 - chr2R 10369098 intron CG42732 - chr2R_6_10365001 chr2R_10365001 RAL-28 337 chr2R 10469022 10469054 chr2R 10469148 10469180 8 126 1.5 3.0 2.2 2.5 158 chr2R 10469022 intron CG11777 + chr2R 10469101 intron CG11777 + chr2R 10469180 intron CG11777 + chr2R_8_10465001 chr2R_10465001 RAL-28 338 chr2R 10577472 10577495 chr2R 10577556 10577580 8 85 0.5 1.0 0.8 4.4 108 chr2R 10577472 intron psq + chr2R 10577526 intron psq + chr2R 10577580 intron psq + chr2R_8_10575001 chr2R_10575001 RAL-28 339 chr2R 10937804 10937823 chr2R 10937942 10937960 5 137 0.0 1.0 0.5 3.3 156 chr2R 10937804 intergenic not near genes chr2R 10937882 intergenic not near genes chr2R 10937960 intergenic Spn47C - chr2R_5_10935001 chr2R_10935001 RAL-28 340 chr2R 10948037 10948059 chr2R 10955578 10955602 17.6 4 7544 2.0 3.0 2.5 1.1 7565 chr2R 10948037 intergenic not near genes chr2R 10951820 intergenic not near genes chr2R 10955602 intergenic not near genes chr2R_4_10950001 chr2R_10950001 RAL-28 341 chr2R 10979672 10979687 chr2R 10980137 10980153 297 5 467 0.5 1.5 1.0 2.5 481 chr2R 10979672 intergenic not near genes chr2R 10979912 intergenic not near genes chr2R 10980153 intergenic not near genes chr2R_5_10975001 chr2R_10975001 RAL-28 342 chr2R 10989481 10989486 chr2R 10989543 10989564 4 74 0.5 4.0 2.2 1.2 83 chr2R 10989481 intron luna - chr2R 10989522 intron luna - chr2R 10989564 intron luna - chr2R_4_10985001 chr2R_10985001 RAL-28 343 chr2R 11009814 11009847 chr2R 11018987 11019021 roo 4 9172 2.0 2.0 2.0 1.3 9207 chr2R 11009814 intron luna - chr2R 11014418 intron luna - chr2R 11019021 intron luna - chr2R_4_11010001 chr2R_11010001 RAL-28 344 chr2R 11019881 11019887 chr2R 11024947 11024950 jockey 4 5066 3.5 2.0 2.8 1.1 5069 chr2R 11019881 intron luna - chr2R 11022416 intron luna - chr2R 11024950 intron luna - chr2R_4_11020001 chr2R_11020001 RAL-28 345 chr2R 11097357 11097387 chr2R 11097462 11097492 8 105 2.0 1.0 1.5 3.2 135 chr2R 11097357 intron luna - chr2R 11097424 intron luna - chr2R 11097492 intron luna - chr2R_8_11095001 chr2R_11095001 RAL-28 346 chr2R 11158865 11158881 chr2R 11159034 11159049 4 168 0.5 0.0 0.2 3.3 184 chr2R 11158865 intron CG13229 - chr2R 11158957 intron CG13229 - chr2R 11159049 intron CG13229 - chr2R_4_11155001 chr2R_11155001 RAL-28 347 chr2R 11207821 11207845 chr2R 11208011 11208037 BS 6 192 2.0 4.5 3.2 1.4 216 chr2R 11207821 intron shn + chr2R 11207929 intron shn + chr2R 11208037 intron shn + chr2R_6_11205001 chr2R_11205001 RAL-28 348 chr2R 11336584 11336606 chr2R 11336666 11336688 5 81 0.5 1.0 0.8 2.8 104 chr2R 11336584 intergenic sha +,lambdaTry + chr2R 11336636 intergenic sha +,lambdaTry + chr2R 11336688 intergenic lambdaTry +,sha + chr2R_5_11335001 chr2R_11335001 RAL-28 349 chr2R 11344147 11344159 chr2R 11344243 11344255 4 95 0.0 0.5 0.2 3.3 108 chr2R 11344147 intergenic alphaTry - chr2R 11344201 intergenic alphaTry - chr2R 11344255 intergenic alphaTry - chr2R_4_11340001 chr2R_11340001 RAL-28 350 chr2R 11415519 11415550 chr2R 11418667 11418681 opus 4 3144 1.5 5.0 3.2 1.0 3162 chr2R 11415519 intron Drip - chr2R 11417100 intron Drip - chr2R 11418681 intron Drip - chr2R_4_11415001 chr2R_11415001 RAL-28 351 chr2R 11472648 11472678 chr2R 11473845 11473874 pogo 5 1197 2.5 2.0 2.2 1.6 1226 chr2R 11472648 intergenic not near genes chr2R 11473261 intergenic not near genes chr2R 11473874 intergenic not near genes chr2R_5_11470001 chr2R_11470001 RAL-28 352 chr2R 11636412 11636442 chr2R 11636489 11636501 6 65 0.5 1.5 1.0 3.0 89 chr2R 11636412 intron CG9005 - chr2R 11636456 intron CG9005 - chr2R 11636501 intron CG9005 - chr2R_6_11635001 chr2R_11635001 RAL-28 353 chr2R 11717413 11717435 chr2R 11717494 11717517 5 82 1.5 3.0 2.2 1.6 104 chr2R 11717413 intron pyr + chr2R 11717465 intron pyr + chr2R 11717517 intron pyr + chr2R_5_11715001 chr2R_11715001 RAL-28 354 chr2R 11899686 11899719 chr2R 11899859 11899891 12 171 3.0 3.5 3.2 2.9 205 chr2R 11899686 intron,5` UTR MCPH1 -,Zip48C + chr2R 11899788 intron,5` UTR MCPH1 -,Zip48C + chr2R 11899891 intron,5` UTR MCPH1 -,Zip48C + chr2R_12_11895001 chr2R_11895001 RAL-28 355 chr2R 12187473 12187507 chr2R 12190091 12190124 29 2621 84.5 72.0 78.2 0.4 2651 chr2R 12187473 exon Cyp6g1 + chr2R 12188798 exon Cyp6g2 - chr2R 12190124 exon Cyp6g2 - chr2R_29_12185001 chr2R_12185001 RAL-28 356 chr2R 12235414 12235421 chr2R 12235532 12235541 4 118 1.0 1.0 1.0 2.0 127 chr2R 12235414 intergenic not near genes chr2R 12235478 intergenic not near genes chr2R 12235541 intergenic not near genes chr2R_4_12235001 chr2R_12235001 RAL-28 357 chr2R 12363388 12363415 chr2R 12363820 12363845 6 431 2.5 2.0 2.2 1.9 457 chr2R 12363388 intergenic CG30043 + chr2R 12363616 intergenic CG30043 + chr2R 12363845 intergenic not near genes chr2R_6_12360001 chr2R_12360001 RAL-28 358 chr2R 12501712 12501726 chr2R 12503850 12503875 Rt1c 6 2154 2.0 2.0 2.0 2.0 2163 chr2R 12501712 intron fdl - chr2R 12502794 intron fdl - chr2R 12503875 intron fdl - chr2R_6_12500001 chr2R_12500001 RAL-28 359 chr2R 12734057 12734089 chr2R 12734137 12734166 7 76 1.5 2.5 2.0 2.3 109 chr2R 12734057 intron CG42663 + chr2R 12734112 intron CG42663 + chr2R 12734166 intron CG42663 + chr2R_7_12730001 chr2R_12730001 RAL-28 360 chr2R 12819451 12819474 chr2R 12824520 12824541 jockey 6 5066 3.0 3.5 3.2 1.4 5090 chr2R 12819451 intergenic not near genes chr2R 12821996 intergenic not near genes chr2R 12824541 intergenic not near genes chr2R_6_12820001 chr2R_12820001 RAL-28 361 chr2R 13089752 13089781 chr2R 13089862 13089887 5 107 0.0 1.0 0.5 3.3 135 chr2R 13089752 intergenic not near genes chr2R 13089820 intergenic not near genes chr2R 13089887 intergenic not near genes chr2R_5_13085001 chr2R_13085001 RAL-28 362 chr2R 13136843 13136861 chr2R 13141641 13141659 Doc 15 4797 4.5 3.0 3.8 3.1 4816 chr2R 13136843 exon Cap-G + chr2R 13139251 intron Cap-G + chr2R 13141659 intron Cap-G + chr2R_15_13135001 chr2R_13135001 RAL-28 363 chr2R 13167431 13167442 chr2R 13167525 13167536 4 94 1.5 0.0 0.8 2.2 105 chr2R 13167431 intron GLaz - chr2R 13167484 intron GLaz - chr2R 13167536 intron GLaz - chr2R_4_13165001 chr2R_13165001 RAL-28 364 chr2R 13218312 13218399 chr2R 13218395 13218476 4 80 0.0 0.0 0.0 4.0 164 chr2R 13218312 intron CG4630 - chr2R 13218394 intron CG4630 - chr2R 13218476 intron CG4630 - chr2R_4_13215001 chr2R_13215001 RAL-28 365 chr2R 13309664 13309684 chr2R 13309782 13309802 8 118 1.5 0.0 0.8 4.4 138 chr2R 13309664 intergenic not near genes chr2R 13309733 intergenic not near genes chr2R 13309802 intergenic not near genes chr2R_8_13305001 chr2R_13305001 RAL-28 366 chr2R 13431490 13431519 chr2R 13431569 13431598 7 78 1.5 1.0 1.2 3.2 108 chr2R 13431490 intron CG42321 - chr2R 13431544 intron CG42321 - chr2R 13431598 intron CG42321 - chr2R_7_13430001 chr2R_13430001 RAL-28 367 chr2R 13554752 13554772 chr2R 13554837 13554856 5 84 0.0 2.5 1.2 2.3 104 chr2R 13554752 intron Roe1 + chr2R 13554804 intron Roe1 + chr2R 13554856 intron Roe1 + chr2R_5_13550001 chr2R_13550001 RAL-28 368 chr2R 13580501 13580526 chr2R 13580851 13580868 jockey 8 347 0.5 1.5 1.0 4.0 367 chr2R 13580501 3` UTR CG6191 - chr2R 13580684 3` UTR,3` UTR CG6191 -,CG45088 - chr2R 13580868 3` UTR,3` UTR CG6191 -,CG45088 - chr2R_8_13580001 chr2R_13580001 RAL-28 369 chr2R 13768980 13769005 chr2R 13769079 13769104 5 97 1.5 3.5 2.5 1.4 124 chr2R 13768980 intergenic not near genes chr2R 13769042 intergenic not near genes chr2R 13769104 intergenic not near genes chr2R_5_13765001 chr2R_13765001 RAL-28 370 chr2R 13822746 13822773 chr2R 13822822 13822848 6 76 1.0 1.0 1.0 3.0 102 chr2R 13822746 intron fl(2)d - chr2R 13822797 intron fl(2)d - chr2R 13822848 intron fl(2)d - chr2R_6_13820001 chr2R_13820001 RAL-28 371 chr2R 13905600 13905631 chr2R 13907582 13907611 Rt1a 8 1981 3.0 1.5 2.2 2.5 2011 chr2R 13905600 intron shot - chr2R 13906606 intron shot - chr2R 13907611 intron shot - chr2R_8_13905001 chr2R_13905001 RAL-28 372 chr2R 14197147 14197166 chr2R 14197252 14197265 10 105 2.5 1.5 2.0 3.3 118 chr2R 14197147 exon CG30069 + chr2R 14197206 exon CG30069 + chr2R 14197265 exon CG30069 + chr2R_10_14195001 chr2R_14195001 RAL-28 373 chr2R 14266769 14266795 chr2R 14266845 14266867 4 72 1.0 2.5 1.8 1.4 98 chr2R 14266769 intron CG8547 - chr2R 14266818 intron CG8547 - chr2R 14266867 intron CG8547 - chr2R_4_14265001 chr2R_14265001 RAL-28 374 chr2R 14277579 14277609 chr2R 14277659 14277691 6 81 1.0 0.0 0.5 4.0 112 chr2R 14277579 5` UTR Ih + chr2R 14277635 5` UTR Ih + chr2R 14277691 5` UTR Ih + chr2R_6_14275001 chr2R_14275001 RAL-28 375 chr2R 14294828 14294856 chr2R 14294908 14294936 9 80 2.0 1.0 1.5 3.6 108 chr2R 14294828 intron Ih + chr2R 14294882 intron Ih + chr2R 14294936 intron Ih + chr2R_9_14290001 chr2R_14290001 RAL-28 376 chr2R 14467307 14467325 chr2R 14476464 14476483 roo 7 9158 1.0 5.5 3.2 1.7 9176 chr2R 14467307 intergenic not near genes chr2R 14471895 intergenic not near genes chr2R 14476483 5` UTR CR44462 + chr2R_7_14470001 chr2R_14470001 RAL-28 377 chr2R 14539271 14539286 chr2R 14539721 14539741 4 453 4.5 2.5 3.5 0.9 470 chr2R 14539271 intron ttv + chr2R 14539506 intron ttv + chr2R 14539741 intron ttv + chr2R_4_14535001 chr2R_14535001 RAL-28 378 chr2R 14565558 14565586 chr2R 14565635 14565662 10 77 1.5 2.0 1.8 3.6 104 chr2R 14565558 intron ttv + chr2R 14565610 intron ttv + chr2R 14565662 intron ttv + chr2R_10_14565001 chr2R_14565001 RAL-28 379 chr2R 14733858 14733864 chr2R 14733947 14733955 4 90 2.0 1.0 1.5 1.6 97 chr2R 14733858 intergenic not near genes chr2R 14733906 intergenic not near genes chr2R 14733955 intergenic not near genes chr2R_4_14730001 chr2R_14730001 RAL-28 380 chr2R 14911709 14911722 chr2R 14911832 14911845 5 123 2.5 2.0 2.2 1.6 136 chr2R 14911709 intron CG10249 - chr2R 14911777 intron CG10249 - chr2R 14911845 intron CG10249 - chr2R_5_14910001 chr2R_14910001 RAL-28 381 chr2R 14922159 14922174 chr2R 14922235 14922250 4 76 1.0 1.0 1.0 2.0 91 chr2R 14922159 intron CG10249 - chr2R 14922204 intron CG10249 - chr2R 14922250 intron CG10249 - chr2R_4_14920001 chr2R_14920001 RAL-28 382 chr2R 15050624 15050649 chr2R 15050703 15050724 5 75 2.0 3.0 2.5 1.4 100 chr2R 15050624 intergenic CR43622 - chr2R 15050674 intergenic CR43622 - chr2R 15050724 intergenic CR43622 - chr2R_5_15050001 chr2R_15050001 RAL-28 383 chr2R 15094891 15094910 chr2R 15094968 15094987 4 77 2.0 2.5 2.2 1.2 96 chr2R 15094891 intergenic not near genes chr2R 15094939 intergenic not near genes chr2R 15094987 intergenic not near genes chr2R_4_15090001 chr2R_15090001 RAL-28 384 chr2R 15161764 15161786 chr2R 15161840 15161860 4 76 1.5 3.5 2.5 1.1 96 chr2R 15161764 intron igl + chr2R 15161812 intron igl + chr2R 15161860 intron igl + chr2R_4_15160001 chr2R_15160001 RAL-28 385 chr2R 15183037 15183070 chr2R 15183128 15183161 10 90 1.5 2.0 1.8 3.6 124 chr2R 15183037 intron igl + chr2R 15183099 intron igl + chr2R 15183161 intron igl + chr2R_10_15180001 chr2R_15180001 RAL-28 386 chr2R 15246282 15246298 chr2R 15246616 15246622 4 330 1.5 4.0 2.8 1.1 340 chr2R 15246282 intergenic not near genes chr2R 15246452 intergenic not near genes chr2R 15246622 intergenic not near genes chr2R_4_15245001 chr2R_15245001 RAL-28 387 chr2R 15655984 15656002 chr2R 15656100 15656118 10 116 1.0 2.0 1.5 4.0 134 chr2R 15655984 intron CG42524 + chr2R 15656051 intron CG42524 + chr2R 15656118 intron CG42524 + chr2R_10_15655001 chr2R_15655001 RAL-28 388 chr2R 15700021 15700272 chr2R 15700111 15700365 11 92 2.0 4.0 3.0 2.8 344 chr2R 15700021 intron,5` UTR CG30080 -,CG42662 - chr2R 15700193 intron,5` UTR CG30080 -,CG42662 - chr2R 15700365 intron,5` UTR CG30080 -,CG42662 - chr2R_11_15700001 chr2R_15700001 RAL-28 389 chr2R 15847613 15847622 chr2R 15847684 15847699 7 76 4.5 1.5 3.0 1.8 86 chr2R 15847613 intron tun + chr2R 15847656 intron tun + chr2R 15847699 intron tun + chr2R_7_15845001 chr2R_15845001 RAL-28 390 chr2R 15877965 15877997 chr2R 15878050 15878082 9 83 0.5 2.0 1.2 4.1 117 chr2R 15877965 intron sli - chr2R 15878024 intron sli - chr2R 15878082 intron sli - chr2R_9_15875001 chr2R_15875001 RAL-28 391 chr2R 15911254 15911270 chr2R 15911483 15911500 6 229 0.5 5.0 2.8 1.6 246 chr2R 15911254 intron sli - chr2R 15911377 intron sli - chr2R 15911500 intron sli - chr2R_6_15910001 chr2R_15910001 RAL-28 392 chr2R 16110512 16110535 chr2R 16110588 16110603 6 74 0.5 1.0 0.8 3.3 91 chr2R 16110512 5` UTR Asph + chr2R 16110558 5` UTR Asph + chr2R 16110603 5` UTR Asph + chr2R_6_16110001 chr2R_16110001 RAL-28 393 chr2R 16149824 16149849 chr2R 16150031 16150055 4 206 1.5 1.0 1.2 1.8 231 chr2R 16149824 intergenic CG10731 -,lbk + chr2R 16149940 intergenic CG10731 -,lbk + chr2R 16150055 intergenic lbk +,CG10731 - chr2R_4_16145001 chr2R_16145001 RAL-28 394 chr2R 16727954 16727976 chr2R 16728025 16728052 4 74 1.5 0.5 1.0 2.0 98 chr2R 16727954 intron CG30463 - chr2R 16728003 intron CG30463 - chr2R 16728052 intron CG30463 - chr2R_4_16725001 chr2R_16725001 RAL-28 395 chr2R 16910974 16910989 chr2R 16911175 16911191 4 200 1.5 1.0 1.2 1.8 217 chr2R 16910974 intergenic not near genes chr2R 16911082 intergenic not near genes chr2R 16911191 intergenic not near genes chr2R_4_16910001 chr2R_16910001 RAL-28 396 chr2R 16912689 16912718 chr2R 16912830 16912857 8 140 2.5 1.5 2.0 2.7 168 chr2R 16912689 intergenic not near genes chr2R 16912773 intergenic not near genes chr2R 16912857 intergenic not near genes chr2R_8_16910001 chr2R_16910001 RAL-28 397 chr2R 16933503 16933522 chr2R 16933581 16933594 5 76 1.0 0.0 0.5 3.3 91 chr2R 16933503 intron Pkc53E + chr2R 16933548 intron Pkc53E + chr2R 16933594 intron Pkc53E + chr2R_5_16930001 chr2R_16930001 RAL-28 398 chr2R 16978478 16978510 chr2R 16978563 16978597 5 85 2.0 0.5 1.2 2.3 119 chr2R 16978478 intron Cbp53E + chr2R 16978538 intron Cbp53E + chr2R 16978597 intron Cbp53E + chr2R_5_16975001 chr2R_16975001 RAL-28 399 chr2R 16987050 16987068 chr2R 16987167 16987189 6 119 1.0 1.0 1.0 3.0 139 chr2R 16987050 intron Cbp53E + chr2R 16987120 intron Cbp53E + chr2R 16987189 intron Cbp53E + chr2R_6_16985001 chr2R_16985001 RAL-28 400 chr2R 17221905 17221935 chr2R 17222097 17222111 6 187 1.0 2.5 1.8 2.1 206 chr2R 17221905 intron mbl + chr2R 17222008 intron mbl + chr2R 17222111 intron mbl + chr2R_6_17220001 chr2R_17220001 RAL-28 401 chr2R 17227590 17227609 chr2R 17227723 17227742 5 131 0.0 1.5 0.8 2.8 152 chr2R 17227590 intron mbl + chr2R 17227666 intron mbl + chr2R 17227742 intron mbl + chr2R_5_17225001 chr2R_17225001 RAL-28 402 chr2R 17232792 17232819 chr2R 17232878 17232906 7 82 3.0 0.0 1.5 2.8 114 chr2R 17232792 intron mbl + chr2R 17232849 intron mbl + chr2R 17232906 intron mbl + chr2R_7_17230001 chr2R_17230001 RAL-28 403 chr2R 17236509 17236539 chr2R 17241713 17241743 copia 8 5202 0.0 4.5 2.2 2.5 5234 chr2R 17236509 intron mbl + chr2R 17239126 intron mbl + chr2R 17241743 intron mbl + chr2R_8_17235001 chr2R_17235001 RAL-28 404 chr2R 17381585 17381613 chr2R 17381673 17381694 8 86 2.5 0.5 1.5 3.2 109 chr2R 17381585 intergenic not near genes chr2R 17381640 intergenic not near genes chr2R 17381694 intergenic not near genes chr2R_8_17380001 chr2R_17380001 RAL-28 405 chr2R 17384514 17384540 chr2R 17384598 17384624 7 83 3.0 2.0 2.5 2.0 110 chr2R 17384514 intergenic not near genes chr2R 17384569 intergenic not near genes chr2R 17384624 intergenic not near genes chr2R_7_17380001 chr2R_17380001 RAL-28 406 chr2R 17623769 17623791 chr2R 17623900 17623917 7 128 2.0 0.0 1.0 3.5 148 chr2R 17623769 intron CG10936 - chr2R 17623843 intron CG10936 - chr2R 17623917 intron CG10936 - chr2R_7_17620001 chr2R_17620001 RAL-28 407 chr2R 17686363 17686399 chr2R 17686722 17686756 11 356 0.0 0.5 0.2 9.2 393 chr2R 17686363 intron,3` UTR HPS4 +,CG42562 + chr2R 17686560 intron HPS4 + chr2R 17686756 intron HPS4 + chr2R_11_17685001 chr2R_17685001 RAL-28 408 chr2R 17935300 17935329 chr2R 17935487 17935512 7 186 0.5 2.5 1.5 2.8 212 chr2R 17935300 intergenic not near genes chr2R 17935406 intergenic not near genes chr2R 17935512 intergenic not near genes chr2R_7_17935001 chr2R_17935001 RAL-28 409 chr2R 17997188 17997194 chr2R 17997260 17997276 4 79 0.5 3.5 2.0 1.3 88 chr2R 17997188 intron dpr13 - chr2R 17997232 intron dpr13 - chr2R 17997276 intron dpr13 - chr2R_4_17995001 chr2R_17995001 RAL-28 410 chr2R 18050488 18050489 chr2R 18050956 18050959 4 472 38.0 11.5 24.8 0.2 471 chr2R 18050488 exon Muc55B - chr2R 18050724 exon Muc55B - chr2R 18050959 exon Muc55B - chr2R_4_18050001 chr2R_18050001 RAL-28 411 chr2R 18255696 18255707 chr2R 18255910 18255920 4 214 2.0 3.0 2.5 1.1 224 chr2R 18255696 intergenic not near genes chr2R 18255808 intergenic not near genes chr2R 18255920 intergenic not near genes chr2R_4_18255001 chr2R_18255001 RAL-28 412 chr2R 18308282 18308315 chr2R 18308388 18308421 13 106 1.5 1.0 1.2 5.9 139 chr2R 18308282 intron sbb - chr2R 18308352 intron sbb - chr2R 18308421 intron sbb - chr2R_13_18305001 chr2R_18305001 RAL-28 413 chr2R 18312366 18312395 chr2R 18312466 18312495 4 100 4.5 1.5 3.0 1.0 129 chr2R 18312366 intron sbb - chr2R 18312430 intron sbb - chr2R 18312495 intron sbb - chr2R_4_18310001 chr2R_18310001 RAL-28 414 chr2R 18349811 18349833 chr2R 18349921 18349938 6 109 0.5 2.5 1.5 2.4 127 chr2R 18349811 intron sbb - chr2R 18349874 intron sbb - chr2R 18349938 intron sbb - chr2R_6_18345001 chr2R_18345001 RAL-28 415 chr2R 18353866 18353875 chr2R 18353964 18353971 6 96 2.0 2.5 2.2 1.9 105 chr2R 18353866 intron sbb - chr2R 18353918 intron sbb - chr2R 18353971 intron sbb - chr2R_6_18350001 chr2R_18350001 RAL-28 416 chr2R 18353878 18353890 chr2R 18353962 18353988 10 94 1.0 2.5 1.8 3.6 110 chr2R 18353878 intron sbb - chr2R 18353933 intron sbb - chr2R 18353988 intron sbb - chr2R_10_18350001 chr2R_18350001 RAL-28 417 chr2R 18376731 18376761 chr2R 18376821 18376847 4 89 1.0 0.5 0.8 2.2 116 chr2R 18376731 intergenic not near genes chr2R 18376789 intergenic not near genes chr2R 18376847 intergenic not near genes chr2R_4_18375001 chr2R_18375001 RAL-28 418 chr2R 18396091 18396125 chr2R 18396173 18396206 5 81 0.5 3.5 2.0 1.7 115 chr2R 18396091 intergenic not near genes chr2R 18396148 intergenic GstE10 - chr2R 18396206 intergenic GstE10 - chr2R_5_18395001 chr2R_18395001 RAL-28 419 chr2R 18435842 18435860 chr2R 18435918 18435937 6 76 1.0 2.0 1.5 2.4 95 chr2R 18435842 intron CG30118 - chr2R 18435890 intron CG30118 - chr2R 18435937 intron CG30118 - chr2R_6_18435001 chr2R_18435001 RAL-28 420 chr2R 18526593 18526612 chr2R 18526675 18526683 4 79 2.0 2.5 2.2 1.2 90 chr2R 18526593 intergenic CG43066 + chr2R 18526638 intergenic CG43066 + chr2R 18526683 intergenic CG43066 + chr2R_4_18525001 chr2R_18525001 RAL-28 421 chr2R 18537143 18537163 chr2R 18537230 18537251 5 85 0.0 2.5 1.2 2.3 108 chr2R 18537143 intron,intron CG45087 +,Pepck + chr2R 18537197 intron,intron CG45087 +,Pepck + chr2R 18537251 3` UTR,exon CG45087 +,Pepck + chr2R_5_18535001 chr2R_18535001 RAL-28 422 chr2R 18553002 18553038 chr2R 18553082 18553118 25 79 2.0 1.5 1.8 8.9 116 chr2R 18553002 intergenic not near genes chr2R 18553060 intergenic not near genes chr2R 18553118 intergenic not near genes chr2R_25_18550001 chr2R_18550001 RAL-28 423 chr2R 18575813 18575831 chr2R 18582001 18582019 3S18 7 6188 1.0 6.0 3.5 1.6 6206 chr2R 18575813 intron GEFmeso - chr2R 18578916 intron GEFmeso - chr2R 18582019 intron GEFmeso - chr2R_7_18575001 chr2R_18575001 RAL-28 424 chr2R 18590865 18590901 chr2R 18600017 18600053 roo 6 9148 0.5 1.0 0.8 3.3 9188 chr2R 18590865 intron GEFmeso - chr2R 18595459 intron GEFmeso - chr2R 18600053 intron GEFmeso - chr2R_6_18595001 chr2R_18595001 RAL-28 425 chr2R 18862311 18862321 chr2R 18862398 18862408 4 87 1.5 0.0 0.8 2.2 97 chr2R 18862311 intergenic Jheh3 - chr2R 18862360 intergenic Jheh3 - chr2R 18862408 intergenic Jheh3 -,CG43069 + chr2R_4_18860001 chr2R_18860001 RAL-28 426 chr2R 18989021 18989044 chr2R 18989098 18989122 4 78 1.5 0.0 0.8 2.2 101 chr2R 18989021 intron tn + chr2R 18989072 intron tn + chr2R 18989122 intron tn + chr2R_4_18985001 chr2R_18985001 RAL-28 427 chr2R 19069928 19069940 chr2R 19070010 19070022 7 80 0.0 0.5 0.2 5.8 94 chr2R 19069928 intron 5-HT1A + chr2R 19069975 intron 5-HT1A + chr2R 19070022 intron 5-HT1A + chr2R_7_19065001 chr2R_19065001 RAL-28 428 chr2R 19183348 19183374 chr2R 19183424 19183449 7 70 2.0 2.0 2.0 2.3 101 chr2R 19183348 intron hppy + chr2R 19183398 intron hppy + chr2R 19183449 intron hppy + chr2R_7_19180001 chr2R_19180001 RAL-28 429 chr2R 19284454 19284471 chr2R 19284535 19284552 4 80 1.0 5.5 3.2 1.0 98 chr2R 19284454 intergenic CG10476 -,CG11906 - chr2R 19284503 intergenic CG10476 - chr2R 19284552 exon CG10476 - chr2R_4_19280001 chr2R_19280001 RAL-28 430 chr2R 19359051 19359067 chr2R 19359133 19359150 7 82 0.0 1.0 0.5 4.7 99 chr2R 19359051 intron CG11961 + chr2R 19359100 intron CG11961 + chr2R 19359150 intron CG11961 + chr2R_7_19355001 chr2R_19355001 RAL-28 431 chr2R 19701526 19701546 chr2R 19701605 19701630 4 83 0.5 2.0 1.2 1.8 104 chr2R 19701526 intergenic Obp56c - chr2R 19701578 intergenic Obp56c - chr2R 19701630 intergenic not near genes chr2R_4_19700001 chr2R_19700001 RAL-28 432 chr2R 19954430 19954457 chr2R 19954553 19954580 4 121 0.0 2.0 1.0 2.0 150 chr2R 19954430 3` UTR CG44622 + chr2R 19954505 3` UTR CG44622 + chr2R 19954580 3` UTR CG44622 + chr2R_4_19950001 chr2R_19950001 RAL-28 433 chr2R 20161892 20161902 chr2R 20161970 20161980 4 78 0.0 0.5 0.2 3.3 88 chr2R 20161892 intergenic not near genes chr2R 20161936 intergenic not near genes chr2R 20161980 intergenic not near genes chr2R_4_20160001 chr2R_20160001 RAL-28 434 chr2R 20192504 20192526 chr2R 20192585 20192605 6 80 1.0 1.5 1.2 2.7 101 chr2R 20192504 intergenic not near genes chr2R 20192554 intergenic not near genes chr2R 20192605 intergenic not near genes chr2R_6_20190001 chr2R_20190001 RAL-28 435 chr2R 20321252 20321260 chr2R 20321325 20321350 5 83 1.5 1.0 1.2 2.3 98 chr2R 20321252 intron CG8920 + chr2R 20321301 intron CG8920 + chr2R 20321350 intron CG8920 + chr2R_5_20320001 chr2R_20320001 RAL-28 436 chr2R 20401245 20401265 chr2R 20401326 20401346 10 80 3.5 2.5 3.0 2.5 101 chr2R 20401245 intergenic not near genes chr2R 20401296 intergenic not near genes chr2R 20401346 intergenic not near genes chr2R_10_20400001 chr2R_20400001 RAL-28 437 chr2R 20424418 20424443 chr2R 20424499 20424523 8 79 2.5 4.0 3.2 1.9 105 chr2R 20424418 5` UTR CG12484 + chr2R 20424470 5` UTR CG12484 + chr2R 20424523 5` UTR CG12484 + chr2R_8_20420001 chr2R_20420001 RAL-28 438 chr2R 20454799 20454822 chr2R 20454880 20454903 6 80 1.0 1.0 1.0 3.0 104 chr2R 20454799 intron CG12484 + chr2R 20454851 intron CG12484 + chr2R 20454903 intron CG12484 + chr2R_6_20450001 chr2R_20450001 RAL-28 439 chr2R 20506208 20506242 chr2R 20506314 20506334 9 103 2.5 3.0 2.8 2.4 126 chr2R 20506208 3` UTR,5` UTR CR44644 -,CR44645 + chr2R 20506271 3` UTR,5` UTR CR44644 -,CR44645 + chr2R 20506334 3` UTR,5` UTR CR44644 -,CR44645 + chr2R_9_20505001 chr2R_20505001 RAL-28 440 chr2R 20690762 20690777 chr2R 20690836 20690852 5 73 4.0 1.5 2.8 1.3 90 chr2R 20690762 intergenic not near genes chr2R 20690807 intergenic not near genes chr2R 20690852 intergenic not near genes chr2R_5_20690001 chr2R_20690001 RAL-28 441 chr2R 20725058 20725080 chr2R 20725180 20725202 5 122 2.0 3.0 2.5 1.4 144 chr2R 20725058 intron dpr + chr2R 20725130 intron dpr + chr2R 20725202 intron dpr + chr2R_5_20725001 chr2R_20725001 RAL-28 442 chr2R 20739443 20739475 chr2R 20744211 20744240 F-element 11 4766 3.5 3.0 3.2 2.6 4797 chr2R 20739443 intron dpr + chr2R 20741842 intron dpr + chr2R 20744240 intron dpr + chr2R_11_20740001 chr2R_20740001 RAL-28 443 chr2R 21151127 21151133 chr2R 21153758 21153766 opus 6 2632 0.0 0.5 0.2 5.0 2639 chr2R 21151127 intron CG30389 - chr2R 21152446 intron CG30389 - chr2R 21153766 intron CG30389 - chr2R_6_21150001 chr2R_21150001 RAL-28 444 chr2R 21223038 21223067 chr2R 21226053 21226078 5 3013 14.0 14.5 14.2 0.3 3040 chr2R 21223038 exon ASPP - chr2R 21224558 intron ASPP - chr2R 21226078 intron ASPP - chr2R_5_21220001 chr2R_21220001 RAL-28 445 chr2R 21343064 21343089 chr2R 21344253 21344279 5 1188 3.0 3.0 3.0 1.2 1215 chr2R 21343064 exon CG15666 + chr2R 21343672 exon CG15666 + chr2R 21344279 intron CG15666 + chr2R_5_21340001 chr2R_21340001 RAL-28 446 chr2R 21370524 21370537 chr2R 21370631 21370641 5 106 3.5 0.5 2.0 1.7 117 chr2R 21370524 intron cv-2 - chr2R 21370582 intron cv-2 - chr2R 21370641 intron cv-2 - chr2R_5_21370001 chr2R_21370001 RAL-28 447 chr2R 21659665 21659681 chr2R 21659902 21659917 4 236 14.0 11.5 12.8 0.3 252 chr2R 21659665 exon Rae1 - chr2R 21659791 exon Rae1 - chr2R 21659917 exon Rae1 - chr2R_4_21655001 chr2R_21655001 RAL-28 448 chr2R 21721379 21721406 chr2R 21721818 21721845 7 439 2.0 2.5 2.2 2.2 466 chr2R 21721379 intron LBR + chr2R 21721612 intron LBR + chr2R 21721845 intron LBR + chr2R_7_21720001 chr2R_21720001 RAL-28 449 chr2R 21753083 21753112 chr2R 21753567 21753597 roo 5 485 1.5 1.5 1.5 2.0 514 chr2R 21753083 intergenic not near genes chr2R 21753340 intergenic not near genes chr2R 21753597 intergenic not near genes chr2R_5_21750001 chr2R_21750001 RAL-28 450 chr2R 21772226 21772253 chr2R 21772306 21772333 8 79 2.0 0.0 1.0 4.0 107 chr2R 21772226 intergenic not near genes chr2R 21772280 intergenic not near genes chr2R 21772333 intergenic not near genes chr2R_8_21770001 chr2R_21770001 RAL-28 451 chr2R 21857352 21857370 chr2R 21857438 21857461 6 90 3.5 3.0 3.2 1.4 109 chr2R 21857352 intergenic not near genes chr2R 21857406 intergenic not near genes chr2R 21857461 intergenic not near genes chr2R_6_21855001 chr2R_21855001 RAL-28 452 chr2R 21886130 21886165 chr2R 21886209 21886244 7 79 1.5 0.0 0.8 3.9 114 chr2R 21886130 intron Fili + chr2R 21886187 intron Fili + chr2R 21886244 intron Fili + chr2R_7_21885001 chr2R_21885001 RAL-28 453 chr2R 21922604 21922613 chr2R 21922669 21922690 4 74 1.0 2.0 1.5 1.6 86 chr2R 21922604 intron Fili + chr2R 21922647 intron Fili + chr2R 21922690 intron Fili + chr2R_4_21920001 chr2R_21920001 RAL-28 454 chr2R 21946767 21946803 chr2R 21946863 21946899 4 90 0.5 0.0 0.2 3.3 132 chr2R 21946767 intergenic not near genes chr2R 21946833 intergenic not near genes chr2R 21946899 intergenic not near genes chr2R_4_21945001 chr2R_21945001 RAL-28 455 chr2R 22035551 22035576 chr2R 22035631 22035663 11 85 1.5 5.0 3.2 2.6 112 chr2R 22035551 intron,3` UTR CG34370 -,CG9308 + chr2R 22035607 intron,3` UTR CG34370 -,CG9308 + chr2R 22035663 intron,3` UTR CG34370 -,CG9308 + chr2R_11_22035001 chr2R_22035001 RAL-28 456 chr2R 22040161 22040185 chr2R 22040241 22040264 7 79 2.5 3.0 2.8 1.8 103 chr2R 22040161 intergenic not near genes chr2R 22040212 intergenic not near genes chr2R 22040264 intergenic not near genes chr2R_7_22040001 chr2R_22040001 RAL-28 457 chr2R 22185678 22185707 chr2R 22185776 22185806 6 98 0.0 0.0 0.0 6.0 128 chr2R 22185678 3` UTR MED16 + chr2R 22185742 3` UTR MED16 + chr2R 22185806 3` UTR MED16 + chr2R_6_22185001 chr2R_22185001 RAL-28 458 chr2R 22264555 22264585 chr2R 22264628 22264642 7 71 1.5 3.5 2.5 2.0 87 chr2R 22264555 intron dve + chr2R 22264598 intron dve + chr2R 22264642 intron dve + chr2R_7_22260001 chr2R_22260001 RAL-28 459 chr2R 22349696 22349719 chr2R 22351473 22351503 jockey 8 1783 3.5 1.0 2.2 2.5 1807 chr2R 22349696 intron Liprin-gamma - chr2R 22350600 intron Liprin-gamma - chr2R 22351503 intron Liprin-gamma - chr2R_8_22350001 chr2R_22350001 RAL-28 460 chr2R 22460383 22460401 chr2R 22460462 22460480 8 79 1.0 1.5 1.2 3.6 97 chr2R 22460383 intron CG10384 + chr2R 22460432 intron CG10384 + chr2R 22460480 intron CG10384 + chr2R_8_22460001 chr2R_22460001 RAL-28 461 chr2R 22499863 22499874 chr2R 22499939 22499948 4 75 0.0 1.0 0.5 2.7 85 chr2R 22499863 intron px - chr2R 22499906 intron px - chr2R 22499948 intron px - chr2R_4_22495001 chr2R_22495001 RAL-28 462 chr2R 22506721 22506736 chr2R 22506799 22506814 4 78 2.5 0.0 1.2 1.8 93 chr2R 22506721 intron px - chr2R 22506768 intron px - chr2R 22506814 intron px - chr2R_4_22505001 chr2R_22505001 RAL-28 463 chr2R 22545619 22545649 chr2R 22545697 22545728 4 79 2.0 0.5 1.2 1.8 109 chr2R 22545619 intron px - chr2R 22545674 intron px - chr2R 22545728 intron px - chr2R_4_22545001 chr2R_22545001 RAL-28 464 chr2R 22599160 22599191 chr2R 22599251 22599286 12 92 2.5 1.0 1.8 4.3 126 chr2R 22599160 intron CG4269 + chr2R 22599223 intron CG4269 + chr2R 22599286 intron CG4269 + chr2R_12_22595001 chr2R_22595001 RAL-28 465 chr2R 22774962 22775000 chr2R 22775381 22775419 jockey 5 419 2.0 2.0 2.0 1.7 457 chr2R 22774962 intron CG42260 - chr2R 22775190 intron CG42260 - chr2R 22775419 intron CG42260 - chr2R_5_22775001 chr2R_22775001 RAL-28 466 chr2R 22775492 22775513 chr2R 22775580 22775601 4 88 4.5 4.5 4.5 0.7 109 chr2R 22775492 intron CG42260 - chr2R 22775546 intron CG42260 - chr2R 22775601 intron CG42260 - chr2R_4_22775001 chr2R_22775001 RAL-28 467 chr2R 22835369 22835398 chr2R 22835443 22835445 9 68 2.0 1.0 1.5 3.6 76 chr2R 22835369 exon CG12490 + chr2R 22835407 exon CG12490 + chr2R 22835445 exon CG12490 + chr2R_9_22835001 chr2R_22835001 RAL-28 468 chr2R 22945056 22945082 chr2R 22945169 22945196 8 113 1.5 0.5 1.0 4.0 140 chr2R 22945056 exon CG42694 + chr2R 22945126 3` UTR CG42694 + chr2R 22945196 intergenic CG42694 + chr2R_8_22945001 chr2R_22945001 RAL-28 469 chr2R 23175051 23175065 chr2R 23175121 23175142 4 74 4.0 3.0 3.5 0.9 91 chr2R 23175051 intron CG34371 - chr2R 23175096 intron CG34371 - chr2R 23175142 intron CG34371 - chr2R_4_23175001 chr2R_23175001 RAL-28 470 chr2R 23487455 23487476 chr2R 23487531 23487558 6 80 1.0 3.0 2.0 2.0 103 chr2R 23487455 intron CG43795 + chr2R 23487506 intron CG43795 + chr2R 23487558 intron CG43795 + chr2R_6_23485001 chr2R_23485001 RAL-28 471 chr2R 23508925 23508942 chr2R 23509036 23509059 4 115 1.0 0.0 0.5 2.7 134 chr2R 23508925 intergenic not near genes chr2R 23508992 intergenic not near genes chr2R 23509059 intergenic not near genes chr2R_4_23505001 chr2R_23505001 RAL-28 472 chr2R 23529572 23529601 chr2R 23537148 23537164 412 6 7573 3.5 2.0 2.8 1.6 7592 chr2R 23529572 intron bw - chr2R 23533368 intron bw - chr2R 23537164 exon bw - chr2R_6_23530001 chr2R_23530001 RAL-28 473 chr2R 23563898 23563914 chr2R 23563976 23563994 8 79 1.0 1.0 1.0 4.0 96 chr2R 23563898 3` UTR Pi3K59F + chr2R 23563946 3` UTR Pi3K59F + chr2R 23563994 3` UTR,5` UTR Pi3K59F +,CG30184 + chr2R_8_23560001 chr2R_23560001 RAL-28 474 chr2R 23674184 23674192 chr2R 23674263 23674272 6 79 4.0 4.5 4.2 1.2 88 chr2R 23674184 intron Pde8 + chr2R 23674228 intron Pde8 + chr2R 23674272 intron Pde8 + chr2R_6_23670001 chr2R_23670001 RAL-28 475 chr2R 23994155 23994168 chr2R 23994231 23994244 4 75 2.5 1.0 1.8 1.4 89 chr2R 23994155 intron CG3860 - chr2R 23994200 intron CG3860 - chr2R 23994244 intron CG3860 - chr2R_4_23990001 chr2R_23990001 RAL-28 476 chr2R 24008414 24008444 chr2R 24008500 24008529 12 85 2.0 4.0 3.0 3.0 115 chr2R 24008414 intron Unc-89 - chr2R 24008472 intron Unc-89 - chr2R 24008529 intron Unc-89 - chr2R_12_24005001 chr2R_24005001 RAL-28 477 chr2R 24077936 24077959 chr2R 24078012 24078035 4 76 1.5 2.0 1.8 1.4 99 chr2R 24077936 3` UTR Mlp60A + chr2R 24077986 3` UTR Mlp60A + chr2R 24078035 3` UTR Mlp60A + chr2R_4_24075001 chr2R_24075001 RAL-28 478 chr2R 24278325 24278362 chr2R 24278409 24278439 8 78 1.0 4.5 2.8 2.1 114 chr2R 24278325 intron nvy + chr2R 24278382 intron nvy + chr2R 24278439 intron nvy + chr2R_8_24275001 chr2R_24275001 RAL-28 479 chr2R 24430920 24430948 chr2R 24431006 24431035 9 85 0.0 1.0 0.5 6.0 115 chr2R 24430920 intergenic CG15873 -,Pgam5-2 - chr2R 24430978 intergenic CG15873 -,Pgam5-2 - chr2R 24431035 intergenic Pgam5-2 -,CG15873 - chr2R_9_24430001 chr2R_24430001 RAL-28 480 chr2R 24590120 24590144 chr2R 24590207 24590236 7 90 3.0 2.5 2.8 1.8 116 chr2R 24590120 intron pio + chr2R 24590178 intron pio + chr2R 24590236 intron pio + chr2R_7_24590001 chr2R_24590001 RAL-28 481 chr2R 24591522 24591542 chr2R 24591597 24591608 4 73 1.0 2.0 1.5 1.6 86 chr2R 24591522 intron pio + chr2R 24591565 intron pio + chr2R 24591608 intron pio + chr2R_4_24590001 chr2R_24590001 RAL-28 482 chr2R 24647607 24647615 chr2R 24655159 24655172 412 5 7554 0.0 4.0 2.0 1.7 7565 chr2R 24647607 intergenic not near genes chr2R 24651390 intergenic not near genes chr2R 24655172 intergenic not near genes chr2R_5_24650001 chr2R_24650001 RAL-28 483 chr2R 24727884 24727917 chr2R 24735390 24735422 mdg1 7 7507 1.5 3.0 2.2 2.2 7538 chr2R 24727884 intron Mid1 - chr2R 24731653 intron Mid1 - chr2R 24735422 intron Mid1 - chr2R_7_24730001 chr2R_24730001 RAL-28 484 chr2R 24763608 24763644 chr2R 24765584 24765604 G2 7 1973 1.0 0.5 0.8 3.9 1996 chr2R 24763608 exon CG3894 + chr2R 24764606 intron CG3894 + chr2R 24765604 exon CG3894 + chr2R_7_24760001 chr2R_24760001 RAL-28 485 chr2R 25004895 25004910 chr2R 25004967 25004984 4 75 3.5 0.5 2.0 1.3 89 chr2R 25004895 intron zip - chr2R 25004940 intron zip - chr2R 25004984 intron zip - chr2R_4_25000001 chr2R_25000001 RAL-28 486 chr2R 25014554 25014573 chr2R 25014630 25014648 6 76 1.5 1.5 1.5 2.4 94 chr2R 25014554 intron uzip + chr2R 25014601 intron uzip + chr2R 25014648 intron uzip + chr2R_6_25010001 chr2R_25010001 RAL-28 487 chr2R 25018338 25018376 chr2R 25018439 25018471 14 100 0.5 2.5 1.5 5.6 133 chr2R 25018338 intron uzip + chr2R 25018404 intron uzip + chr2R 25018471 intron uzip + chr2R_14_25015001 chr2R_25015001 RAL-28 488 chr2R 25101276 25101309 chr2R 25101377 25101411 5 102 1.0 0.5 0.8 2.8 135 chr2R 25101276 intron lov - chr2R 25101344 intron lov - chr2R 25101411 intron lov - chr2R_5_25100001 chr2R_25100001 RAL-28 489 chr2R 25180765 25180790 chr2R 25180842 25180867 4 76 1.5 1.5 1.5 1.6 102 chr2R 25180765 intergenic not near genes chr2R 25180816 intergenic not near genes chr2R 25180867 intergenic not near genes chr2R_4_25180001 chr2R_25180001 RAL-28 490 chr3L 33171 33462 chr3L 33382 33561 11 159 1.0 1.0 1.0 5.5 390 chr3L 33171 intergenic not near genes chr3L 33366 intergenic not near genes chr3L 33561 intergenic not near genes chr3L_11_30001 chr3L_30001 RAL-28 491 chr3L 46920 46941 chr3L 47080 47100 7 160 1.0 0.5 0.8 3.9 180 chr3L 46920 intergenic not near genes chr3L 47010 intergenic not near genes chr3L 47100 intergenic not near genes chr3L_7_45001 chr3L_45001 RAL-28 492 chr3L 68984 69009 chr3L 69070 69096 6 84 2.0 3.0 2.5 1.7 112 chr3L 68984 3` UTR Lsp1gamma + chr3L 69040 intergenic Lsp1gamma +,CR44510 + chr3L 69096 intergenic CR44510 +,Lsp1gamma + chr3L_6_65001 chr3L_65001 RAL-28 493 chr3L 180497 180525 chr3L 180746 180773 7 248 3.5 3.0 3.2 1.7 276 chr3L 180497 intron CG13875 + chr3L 180635 intron CG13875 + chr3L 180773 5` UTR CG13875 + chr3L_7_180001 chr3L_180001 RAL-28 494 chr3L 270083 270090 chr3L 270435 270442 4 352 2.0 1.5 1.8 1.4 359 chr3L 270083 3` UTR miple + chr3L 270262 3` UTR miple + chr3L 270442 intergenic miple + chr3L_4_270001 chr3L_270001 RAL-28 495 chr3L 402688 402718 chr3L 409741 409771 297 6 7053 0.0 1.5 0.8 3.3 7083 chr3L 402688 intergenic not near genes chr3L 406230 intergenic not near genes chr3L 409771 intergenic not near genes chr3L_6_405001 chr3L_405001 RAL-28 496 chr3L 423186 423210 chr3L 423315 423339 7 128 1.0 1.5 1.2 3.2 153 chr3L 423186 intergenic not near genes chr3L 423262 intergenic not near genes chr3L 423339 intergenic not near genes chr3L_7_420001 chr3L_420001 RAL-28 497 chr3L 559526 559554 chr3L 559915 559934 6 386 1.0 1.5 1.2 2.7 408 chr3L 559526 intron hipk + chr3L 559730 intron hipk + chr3L 559934 intron hipk + chr3L_6_555001 chr3L_555001 RAL-28 498 chr3L 642467 642502 chr3L 642558 642593 5 91 0.5 1.0 0.8 2.8 126 chr3L 642467 5` UTR CR43334 + chr3L 642530 5` UTR CR43334 + chr3L 642593 5` UTR CR43334 + chr3L_5_640001 chr3L_640001 RAL-28 499 chr3L 705902 705935 chr3L 705998 706031 5 96 1.0 2.0 1.5 2.0 129 chr3L 705902 intergenic CG13895 -,CR44514 + chr3L 705966 3` UTR CG13895 - chr3L 706031 3` UTR CG13895 - chr3L_5_705001 chr3L_705001 RAL-28 500 chr3L 740467 740491 chr3L 740547 740572 11 79 3.0 7.5 5.2 1.8 105 chr3L 740467 intron hng3 - chr3L 740520 intron hng3 - chr3L 740572 intron hng3 - chr3L_11_740001 chr3L_740001 RAL-28 501 chr3L 746500 746526 chr3L 746585 746611 5 85 1.0 5.5 3.2 1.2 111 chr3L 746500 intron hng3 - chr3L 746556 intron hng3 - chr3L 746611 intron hng3 - chr3L_5_745001 chr3L_745001 RAL-28 502 chr3L 832606 832633 chr3L 832693 832720 4 87 1.5 3.0 2.2 1.2 114 chr3L 832606 intron,3` UTR CG13900 -,snoRNA:Psi28S-3308 - chr3L 832663 intron CG13900 - chr3L 832720 exon CG13900 - chr3L_4_830001 chr3L_830001 RAL-28 503 chr3L 858001 858018 chr3L 866480 866492 Tirant 5 8479 2.5 1.5 2.0 1.7 8491 chr3L 858001 intergenic not near genes chr3L 862246 intergenic not near genes chr3L 866492 intergenic CG12502 + chr3L_5_860001 chr3L_860001 RAL-28 504 chr3L 875663 875692 chr3L 875749 875779 8 85 1.0 4.0 2.5 2.3 116 chr3L 875663 intron CG32479 + chr3L 875721 intron CG32479 + chr3L 875779 intron CG32479 + chr3L_8_875001 chr3L_875001 RAL-28 505 chr3L 925175 925210 chr3L 932600 932636 mdg1 7 7426 1.0 1.0 1.0 3.5 7461 chr3L 925175 intron Glut1 + chr3L 928906 intron Glut1 + chr3L 932636 intron Glut1 + chr3L_7_925001 chr3L_925001 RAL-28 506 chr3L 933911 934111 chr3L 934014 934193 23 89 1.0 3.0 2.0 7.7 282 chr3L 933911 intron Glut1 + chr3L 934052 intron Glut1 + chr3L 934193 intron Glut1 + chr3L_23_930001 chr3L_930001 RAL-28 507 chr3L 939775 939804 chr3L 940896 940925 jockey 10 1120 3.0 2.5 2.8 2.6 1150 chr3L 939775 intron Glut1 + chr3L 940350 intron Glut1 + chr3L 940925 intron Glut1 + chr3L_10_940001 chr3L_940001 RAL-28 508 chr3L 1003052 1003071 chr3L 1003129 1003148 4 77 4.5 4.0 4.2 0.8 96 chr3L 1003052 intron trio - chr3L 1003100 intron trio - chr3L 1003148 intron trio - chr3L_4_1000001 chr3L_1000001 RAL-28 509 chr3L 1219595 1219615 chr3L 1227328 1227345 412 8 7732 5.0 4.5 4.8 1.4 7750 chr3L 1219595 intron mwh + chr3L 1223470 intron mwh + chr3L 1227345 intron mwh + chr3L_8_1220001 chr3L_1220001 RAL-28 510 chr3L 1265547 1265578 chr3L 1265630 1265630 4 74 2.0 3.0 2.5 1.1 83 chr3L 1265547 intron CG9134 + chr3L 1265588 intron CG9134 + chr3L 1265630 intron CG9134 + chr3L_4_1265001 chr3L_1265001 RAL-28 511 chr3L 1310982 1311005 chr3L 1315846 1315867 8 4864 20.0 19.0 19.5 0.4 4885 chr3L 1310982 exon CG2469 + chr3L 1313424 intergenic CG9186 -,CG9153 + chr3L 1315867 exon CG9153 + chr3L_8_1310001 chr3L_1310001 RAL-28 512 chr3L 1347169 1347193 chr3L 1347252 1347274 9 79 3.0 4.0 3.5 2.0 105 chr3L 1347169 intron Ptp61F - chr3L 1347222 intron Ptp61F - chr3L 1347274 intron Ptp61F - chr3L_9_1345001 chr3L_1345001 RAL-28 513 chr3L 1415781 1415807 chr3L 1415862 1415889 8 82 2.0 3.0 2.5 2.3 108 chr3L 1415781 intron Ptp61F - chr3L 1415835 intron Ptp61F - chr3L 1415889 intron Ptp61F - chr3L_8_1415001 chr3L_1415001 RAL-28 514 chr3L 1420342 1420373 chr3L 1420422 1420453 6 80 3.0 1.5 2.2 1.9 111 chr3L 1420342 intron Ptp61F - chr3L 1420398 intron Ptp61F - chr3L 1420453 intron Ptp61F - chr3L_6_1420001 chr3L_1420001 RAL-28 515 chr3L 1505996 1506028 chr3L 1513593 1513625 17.6 8 7594 3.0 1.5 2.2 2.5 7629 chr3L 1505996 intron,intron Psa +,cue - chr3L 1509810 intron,intron Psa +,cue - chr3L 1513625 intron,intron Psa +,cue - chr3L_8_1505001 chr3L_1505001 RAL-28 516 chr3L 1922448 1922469 chr3L 1922526 1922543 4 76 5.0 7.0 6.0 0.6 95 chr3L 1922448 intron Dbx + chr3L 1922496 intron Dbx + chr3L 1922543 intron Dbx + chr3L_4_1920001 chr3L_1920001 RAL-28 517 chr3L 1924964 1924975 chr3L 1925102 1925113 4 138 1.5 1.5 1.5 1.6 149 chr3L 1924964 exon Dbx + chr3L 1925038 intron Dbx + chr3L 1925113 intron Dbx + chr3L_4_1925001 chr3L_1925001 RAL-28 518 chr3L 1936916 1936949 chr3L 1937906 1937940 8 990 9.0 7.0 8.0 0.9 1024 chr3L 1936916 intron CG5687 - chr3L 1937428 intron CG5687 - chr3L 1937940 intron CG5687 - chr3L_8_1935001 chr3L_1935001 RAL-28 519 chr3L 2039375 2039396 chr3L 2039466 2039486 4 91 1.0 1.5 1.2 1.8 111 chr3L 2039375 intergenic sls - chr3L 2039430 intergenic sls - chr3L 2039486 intergenic sls - chr3L_4_2035001 chr3L_2035001 RAL-28 520 chr3L 2108257 2108282 chr3L 2113461 2113470 copia 5 5200 1.0 0.0 0.5 3.3 5213 chr3L 2108257 intron sls - chr3L 2110864 intron sls - chr3L 2113470 intron sls - chr3L_5_2110001 chr3L_2110001 RAL-28 521 chr3L 2168772 2168807 chr3L 2168863 2168897 9 89 2.0 2.5 2.2 2.8 125 chr3L 2168772 exon CG15879 - chr3L 2168834 intron CG15879 - chr3L 2168897 intron CG15879 - chr3L_9_2165001 chr3L_2165001 RAL-28 522 chr3L 2277979 2278000 chr3L 2278175 2278196 4 196 3.5 2.5 3.0 1.0 217 chr3L 2277979 3` UTR yellow-g2 + chr3L 2278088 intergenic yellow-g2 + chr3L 2278196 intergenic yellow-g2 + chr3L_4_2275001 chr3L_2275001 RAL-28 523 chr3L 2308015 2308036 chr3L 2308113 2308142 4 104 1.0 2.0 1.5 1.6 127 chr3L 2308015 intergenic not near genes chr3L 2308078 intergenic not near genes chr3L 2308142 intergenic not near genes chr3L_4_2305001 chr3L_2305001 RAL-28 524 chr3L 2332978 2333006 chr3L 2333248 2333275 8 269 4.0 1.5 2.8 2.1 297 chr3L 2332978 intron MsR1 + chr3L 2333126 intron MsR1 + chr3L 2333275 intron MsR1 + chr3L_8_2330001 chr3L_2330001 RAL-28 525 chr3L 2480303 2480323 chr3L 2480403 2480423 5 98 2.5 3.5 3.0 1.2 120 chr3L 2480303 intron CG45186 + chr3L 2480363 intron CG45186 + chr3L 2480423 intron CG45186 + chr3L_5_2480001 chr3L_2480001 RAL-28 526 chr3L 2480326 2480331 chr3L 2480402 2480431 5 95 2.0 3.5 2.8 1.3 105 chr3L 2480326 intron CG45186 + chr3L 2480378 intron CG45186 + chr3L 2480431 intron CG45186 + chr3L_5_2480001 chr3L_2480001 RAL-28 527 chr3L 2533647 2533678 chr3L 2533729 2533759 7 81 2.0 2.5 2.2 2.2 112 chr3L 2533647 intron Spn - chr3L 2533703 intron Spn - chr3L 2533759 intron Spn - chr3L_7_2530001 chr3L_2530001 RAL-28 528 chr3L 2534611 2534646 chr3L 2534694 2534729 6 83 0.0 1.0 0.5 4.0 118 chr3L 2534611 intron Spn - chr3L 2534670 intron Spn - chr3L 2534729 exon Spn - chr3L_6_2530001 chr3L_2530001 RAL-28 529 chr3L 2541748 2541781 chr3L 2541830 2541862 7 81 1.5 2.5 2.0 2.3 114 chr3L 2541748 intron Spn - chr3L 2541805 intron Spn - chr3L 2541862 intron Spn - chr3L_7_2540001 chr3L_2540001 RAL-28 530 chr3L 2561543 2561557 chr3L 2561619 2561634 4 76 1.5 2.5 2.0 1.3 91 chr3L 2561543 intron msn - chr3L 2561588 intron msn - chr3L 2561634 intron msn - chr3L_4_2560001 chr3L_2560001 RAL-28 531 chr3L 2683943 2683960 chr3L 2684019 2684033 5 75 3.0 1.0 2.0 1.7 90 chr3L 2683943 intron Fife - chr3L 2683988 intron Fife - chr3L 2684033 intron Fife - chr3L_5_2680001 chr3L_2680001 RAL-28 532 chr3L 2873968 2873998 chr3L 2874076 2874102 8 105 2.5 1.5 2.0 2.7 134 chr3L 2873968 intron CG43444 - chr3L 2874035 intron CG43444 - chr3L 2874102 intron CG43444 - chr3L_8_2870001 chr3L_2870001 RAL-28 533 chr3L 3061308 3061315 chr3L 3069880 3069886 Tirant 4 8577 2.5 2.5 2.5 1.1 8578 chr3L 3061308 intron CG32486 - chr3L 3065597 intron CG32486 - chr3L 3069886 intron CG32486 - chr3L_4_3065001 chr3L_3065001 RAL-28 534 chr3L 3284449 3284464 chr3L 3284532 3284547 4 84 2.5 2.5 2.5 1.1 98 chr3L 3284449 intron CG12017 + chr3L 3284498 intron CG12017 + chr3L 3284547 intron CG12017 + chr3L_4_3280001 chr3L_3280001 RAL-28 535 chr3L 3304369 3304400 chr3L 3304631 3304664 10 263 1.0 1.0 1.0 5.0 295 chr3L 3304369 intron ZnT63C + chr3L 3304516 intron ZnT63C + chr3L 3304664 5` UTR ZnT63C + chr3L_10_3300001 chr3L_3300001 RAL-28 536 chr3L 3475074 3475106 chr3L 3475518 3475550 jockey 5 443 1.5 4.5 3.0 1.2 476 chr3L 3475074 intron CG42324 + chr3L 3475312 intron CG42324 + chr3L 3475550 intron CG42324 + chr3L_5_3475001 chr3L_3475001 RAL-28 537 chr3L 3484378 3484403 chr3L 3484553 3484579 7 176 0.0 3.0 1.5 2.8 201 chr3L 3484378 intron,exon CG42324 +,CG43074 - chr3L 3484478 intron,exon CG42324 +,CG43074 - chr3L 3484579 intron,exon CG42324 +,CG43074 - chr3L_7_3480001 chr3L_3480001 RAL-28 538 chr3L 3494754 3494780 chr3L 3494830 3494858 13 77 2.5 2.0 2.2 4.1 104 chr3L 3494754 intron CG42324 + chr3L 3494806 intron CG42324 + chr3L 3494858 intron CG42324 + chr3L_13_3490001 chr3L_3490001 RAL-28 539 chr3L 3556264 3556278 chr3L 3556325 3556356 4 74 1.0 1.0 1.0 2.0 92 chr3L 3556264 intron Eip63E + chr3L 3556310 intron Eip63E + chr3L 3556356 intron Eip63E + chr3L_4_3555001 chr3L_3555001 RAL-28 540 chr3L 3601297 3601330 chr3L 3606608 3606641 copia 5 5311 3.5 1.0 2.2 1.6 5344 chr3L 3601297 intron Eip63E + chr3L 3603969 intron Eip63E + chr3L 3606641 intron Eip63E + chr3L_5_3600001 chr3L_3600001 RAL-28 541 chr3L 3814841 3814871 chr3L 3814927 3814957 4 84 0.0 1.0 0.5 2.7 116 chr3L 3814841 intron,3` UTR Scsalpha +,CR43932 - chr3L 3814899 intron,intron Scsalpha +,CR43932 - chr3L 3814957 intron,3` UTR Scsalpha +,CR43932 - chr3L_4_3810001 chr3L_3810001 RAL-28 542 chr3L 3833737 3833762 chr3L 3833978 3834003 pogo 6 241 2.0 0.5 1.2 2.7 266 chr3L 3833737 intron enc + chr3L 3833870 intron enc + chr3L 3834003 intron enc + chr3L_6_3830001 chr3L_3830001 RAL-28 543 chr3L 3848086 3848100 chr3L 3848157 3848176 4 75 1.0 1.0 1.0 2.0 90 chr3L 3848086 intron Awh + chr3L 3848131 intron Awh + chr3L 3848176 intron Awh + chr3L_4_3845001 chr3L_3845001 RAL-28 544 chr3L 3890961 3890971 chr3L 3891042 3891052 4 81 3.0 0.0 1.5 1.6 91 chr3L 3890961 intergenic not near genes chr3L 3891006 intergenic not near genes chr3L 3891052 intergenic not near genes chr3L_4_3890001 chr3L_3890001 RAL-28 545 chr3L 3921398 3921418 chr3L 3921662 3921682 5 264 0.5 4.0 2.2 1.6 284 chr3L 3921398 intron Eip63F-1 - chr3L 3921540 intron Eip63F-1 - chr3L 3921682 intron Eip63F-1 - chr3L_5_3920001 chr3L_3920001 RAL-28 546 chr3L 4081747 4081766 chr3L 4081842 4081861 6 95 0.0 1.0 0.5 4.0 114 chr3L 4081747 intron Gad1 - chr3L 4081804 intron Gad1 - chr3L 4081861 intron Gad1 - chr3L_6_4080001 chr3L_4080001 RAL-28 547 chr3L 4403182 4403207 chr3L 4403380 4403405 7 197 0.5 2.0 1.2 3.2 223 chr3L 4403182 intergenic slow +,Syx17 + chr3L 4403294 intergenic slow +,Syx17 + chr3L 4403405 intergenic Syx17 +,slow + chr3L_7_4400001 chr3L_4400001 RAL-28 548 chr3L 4858304 4858334 chr3L 4858394 4858424 9 82 4.5 2.0 3.2 2.1 120 chr3L 4858304 intergenic not near genes chr3L 4858364 intergenic not near genes chr3L 4858424 intergenic not near genes chr3L_9_4855001 chr3L_4855001 RAL-28 549 chr3L 4901129 4901148 chr3L 4907318 4907338 diver 6 6190 1.5 0.5 1.0 3.0 6209 chr3L 4901129 intergenic CG13704 + chr3L 4904234 intergenic not near genes chr3L 4907338 intergenic not near genes chr3L_6_4900001 chr3L_4900001 RAL-28 550 chr3L 4990746 4990779 chr3L 4990858 4990888 4 111 4.5 1.0 2.8 1.1 142 chr3L 4990746 intron Con - chr3L 4990817 intron Con - chr3L 4990888 intron Con - chr3L_4_4990001 chr3L_4990001 RAL-28 551 chr3L 5104484 5104498 chr3L 5124618 5124631 4 20133 3.0 0.0 1.5 1.6 20147 chr3L 5104484 intergenic not near genes chr3L 5114558 intergenic not near genes chr3L 5124631 intergenic not near genes chr3L_4_5110001 chr3L_5110001 RAL-28 552 chr3L 5164635 5164662 chr3L 5164711 5164738 4 76 0.5 1.5 1.0 2.0 103 chr3L 5164635 intron shep - chr3L 5164686 intron shep - chr3L 5164738 intron shep - chr3L_4_5160001 chr3L_5160001 RAL-28 553 chr3L 5263315 5263340 chr3L 5263390 5263416 4 75 0.5 1.0 0.8 2.2 101 chr3L 5263315 intron shep - chr3L 5263366 intron shep - chr3L 5263416 intron shep - chr3L_4_5260001 chr3L_5260001 RAL-28 554 chr3L 5321078 5321106 chr3L 5321154 5321182 7 73 0.5 2.5 1.5 2.8 104 chr3L 5321078 intergenic not near genes chr3L 5321130 intergenic not near genes chr3L 5321182 intergenic not near genes chr3L_7_5320001 chr3L_5320001 RAL-28 555 chr3L 5388206 5388230 chr3L 5388530 5388554 6 324 4.5 3.0 3.8 1.2 348 chr3L 5388206 intergenic not near genes chr3L 5388380 intergenic not near genes chr3L 5388554 intergenic not near genes chr3L_6_5385001 chr3L_5385001 RAL-28 556 chr3L 5490386 5490414 chr3L 5490531 5490560 4 145 1.5 1.0 1.2 1.8 174 chr3L 5490386 intergenic not near genes chr3L 5490473 intergenic not near genes chr3L 5490560 intergenic not near genes chr3L_4_5490001 chr3L_5490001 RAL-28 557 chr3L 5500087 5500112 chr3L 5500272 5500295 6 185 0.5 1.0 0.8 3.3 208 chr3L 5500087 5` UTR CR44518 + chr3L 5500191 intergenic CR44518 + chr3L 5500295 intergenic CR44518 + chr3L_6_5500001 chr3L_5500001 RAL-28 558 chr3L 5537729 5537758 chr3L 5538071 5538099 jockey 4 341 0.5 0.5 0.5 2.7 370 chr3L 5537729 intergenic not near genes chr3L 5537914 intergenic CG10625 - chr3L 5538099 intergenic CG10625 - chr3L_4_5535001 chr3L_5535001 RAL-28 559 chr3L 5683264 5683274 chr3L 5683351 5683361 4 87 1.0 2.0 1.5 1.6 97 chr3L 5683264 intron sif + chr3L 5683312 intron sif + chr3L 5683361 intron sif + chr3L_4_5680001 chr3L_5680001 RAL-28 560 chr3L 6001681 6001710 chr3L 6004379 6004410 jockey 7 2700 2.5 1.0 1.8 2.5 2729 chr3L 6001681 intron PVRAP + chr3L 6003046 intron PVRAP + chr3L 6004410 intron PVRAP + chr3L_7_6000001 chr3L_6000001 RAL-28 561 chr3L 6045388 6045417 chr3L 6045480 6045509 5 92 0.0 1.5 0.8 2.8 121 chr3L 6045388 intergenic not near genes chr3L 6045448 intergenic not near genes chr3L 6045509 intergenic not near genes chr3L_5_6045001 chr3L_6045001 RAL-28 562 chr3L 6052654 6052664 chr3L 6052734 6052749 5 84 4.5 5.5 5.0 0.8 95 chr3L 6052654 exon Jon65Aii + chr3L 6052702 intron Jon65Aii + chr3L 6052749 exon Jon65Aii + chr3L_5_6050001 chr3L_6050001 RAL-28 563 chr3L 6065017 6065040 chr3L 6065094 6065114 4 76 0.5 0.0 0.2 3.3 97 chr3L 6065017 intergenic not near genes chr3L 6065066 intergenic not near genes chr3L 6065114 intergenic not near genes chr3L_4_6065001 chr3L_6065001 RAL-28 564 chr3L 6143978 6143998 chr3L 6144118 6144137 4 138 2.5 0.5 1.5 1.6 159 chr3L 6143978 3` UTR Lcp65Ad + chr3L 6144058 3` UTR Lcp65Ad + chr3L 6144137 intergenic Lcp65Ad + chr3L_4_6140001 chr3L_6140001 RAL-28 565 chr3L 6188950 6188973 chr3L 6189033 6189056 7 81 3.0 2.5 2.8 1.8 106 chr3L 6188950 exon D19A - chr3L 6189003 5` UTR D19A - chr3L 6189056 5` UTR D19A - chr3L_7_6185001 chr3L_6185001 RAL-28 566 chr3L 6220914 6220938 chr3L 6230065 6230089 roo 8 9151 0.5 1.5 1.0 4.0 9175 chr3L 6220914 5` UTR pncr008:3L + chr3L 6225502 intergenic not near genes chr3L 6230089 intergenic not near genes chr3L_8_6225001 chr3L_6225001 RAL-28 567 chr3L 6259253 6259281 chr3L 6261298 6261327 5 2045 7.0 13.0 10.0 0.5 2074 chr3L 6259253 3` UTR ImpL3 - chr3L 6260290 exon ImpL3 - chr3L 6261327 intron ImpL3 - chr3L_5_6260001 chr3L_6260001 RAL-28 568 chr3L 6278214 6278224 chr3L 6278290 6278300 4 76 2.0 0.0 1.0 2.0 86 chr3L 6278214 intergenic not near genes chr3L 6278257 intergenic not near genes chr3L 6278300 intergenic not near genes chr3L_4_6275001 chr3L_6275001 RAL-28 569 chr3L 6405659 6405682 chr3L 6432123 6432145 roo 4 26464 0.5 0.0 0.2 3.3 26486 chr3L 6405659 intron CG42747 + chr3L 6418902 intron CG42747 + chr3L 6432145 intron CG42747 + chr3L_4_6415001 chr3L_6415001 RAL-28 570 chr3L 6589982 6590003 chr3L 6590078 6590080 6 93 1.5 1.5 1.5 2.4 98 chr3L 6589982 intron CG18769 + chr3L 6590031 intron CG18769 + chr3L 6590080 intron CG18769 + chr3L_6_6590001 chr3L_6590001 RAL-28 571 chr3L 6642871 6643159 chr3L 6642950 6643246 6 82 0.5 0.0 0.2 5.0 375 chr3L 6642871 intergenic CR45239 + chr3L 6643058 intergenic CR45239 + chr3L 6643246 intergenic CR45239 + chr3L_6_6640001 chr3L_6640001 RAL-28 572 chr3L 6942059 6942083 chr3L 6942158 6942182 5 97 1.0 1.0 1.0 2.5 123 chr3L 6942059 intergenic not near genes chr3L 6942120 intergenic not near genes chr3L 6942182 intergenic not near genes chr3L_5_6940001 chr3L_6940001 RAL-28 573 chr3L 6958973 6959002 chr3L 6963561 6963584 5 4582 16.5 22.0 19.2 0.2 4611 chr3L 6958973 exon Surf1 + chr3L 6961278 exon sgl - chr3L 6963584 intron sgl - chr3L_5_6960001 chr3L_6960001 RAL-28 574 chr3L 7112585 7112613 chr3L 7112670 7112700 5 87 0.5 0.5 0.5 3.3 115 chr3L 7112585 intron form3 + chr3L 7112642 intron form3 + chr3L 7112700 intron form3 + chr3L_5_7110001 chr3L_7110001 RAL-28 575 chr3L 7358294 7358326 chr3L 7359578 7359610 4 1284 14.0 13.0 13.5 0.3 1316 chr3L 7358294 exon pst - chr3L 7358952 exon pst - chr3L 7359610 intron pst - chr3L_4_7355001 chr3L_7355001 RAL-28 576 chr3L 7560351 7560377 chr3L 7560590 7560613 4 238 1.0 2.0 1.5 1.6 262 chr3L 7560351 intergenic CG14837 - chr3L 7560482 intergenic CG14837 - chr3L 7560613 intergenic not near genes chr3L_4_7560001 chr3L_7560001 RAL-28 577 chr3L 7576218 7576235 chr3L 7576303 7576323 4 86 1.5 2.0 1.8 1.4 105 chr3L 7576218 intergenic not near genes chr3L 7576270 intergenic not near genes chr3L 7576323 intergenic not near genes chr3L_4_7575001 chr3L_7575001 RAL-28 578 chr3L 7581628 7581652 chr3L 7581712 7581733 6 81 2.0 1.0 1.5 2.4 105 chr3L 7581628 intergenic not near genes chr3L 7581680 intergenic not near genes chr3L 7581733 intergenic not near genes chr3L_6_7580001 chr3L_7580001 RAL-28 579 chr3L 7751315 7751327 chr3L 7751377 7751399 5 72 2.0 1.5 1.8 1.8 84 chr3L 7751315 intron CG32373 + chr3L 7751357 intron CG32373 + chr3L 7751399 intron CG32373 + chr3L_5_7750001 chr3L_7750001 RAL-28 580 chr3L 7793715 7793744 chr3L 7800764 7800796 297 7 7051 0.5 2.0 1.2 3.2 7081 chr3L 7793715 intron CG32369 - chr3L 7797256 intron CG32369 - chr3L 7800796 intron CG32369 - chr3L_7_7795001 chr3L_7795001 RAL-28 581 chr3L 7886519 7886545 chr3L 7889037 7889048 Stalker4 8 2516 0.0 0.5 0.2 6.7 2529 chr3L 7886519 intron CG32365 + chr3L 7887784 intron CG32365 + chr3L 7889048 intron CG32365 + chr3L_8_7885001 chr3L_7885001 RAL-28 582 chr3L 8076679 8076714 chr3L 8076762 8076797 5 82 2.0 0.5 1.2 2.3 118 chr3L 8076679 intron Ect4 + chr3L 8076738 intron Ect4 + chr3L 8076797 intron Ect4 + chr3L_5_8075001 chr3L_8075001 RAL-28 583 chr3L 8551751 8551772 chr3L 8551833 8551855 6 82 1.0 4.0 2.5 1.7 104 chr3L 8551751 intron rhea + chr3L 8551803 intron rhea + chr3L 8551855 intron rhea + chr3L_6_8550001 chr3L_8550001 RAL-28 584 chr3L 8619507 8619544 chr3L 8619596 8619633 6 89 1.5 1.0 1.2 2.7 126 chr3L 8619507 intergenic S-Lap1 +,S-Lap2 + chr3L 8619570 intergenic S-Lap1 +,S-Lap2 + chr3L 8619633 intergenic S-Lap1 +,S-Lap2 + chr3L_6_8615001 chr3L_8615001 RAL-28 585 chr3L 8643580 8643605 chr3L 8643656 8643681 5 76 2.0 2.0 2.0 1.7 101 chr3L 8643580 3` UTR Cpr66D + chr3L 8643630 intergenic Cpr66D + chr3L 8643681 intergenic Cpr66D + chr3L_5_8640001 chr3L_8640001 RAL-28 586 chr3L 8690608 8690632 chr3L 8690850 8690879 9 245 3.0 1.0 2.0 3.0 271 chr3L 8690608 intergenic not near genes chr3L 8690744 intergenic not near genes chr3L 8690879 intergenic not near genes chr3L_9_8690001 chr3L_8690001 RAL-28 587 chr3L 8712884 8712902 chr3L 8713173 8713198 4 291 25.0 18.5 21.8 0.2 314 chr3L 8712884 intergenic not near genes chr3L 8713041 intergenic not near genes chr3L 8713198 intergenic not near genes chr3L_4_8710001 chr3L_8710001 RAL-28 588 chr3L 9013691 9013692 chr3L 18417066 18417066 5 9403375 19.5 12.0 15.8 0.3 9403375 chr3L 9013691 intron Doc2 - chr3L 13715378 intron bru-3 - chr3L 18417066 intergenic not near genes chr3L_5_13715001 chr3L_13715001 RAL-28 589 chr3L 9030427 9030453 chr3L 9030506 9030532 4 79 2.5 0.0 1.2 1.8 105 chr3L 9030427 intergenic not near genes chr3L 9030480 intergenic not near genes chr3L 9030532 intergenic not near genes chr3L_4_9030001 chr3L_9030001 RAL-28 590 chr3L 9061134 9061163 chr3L 9061237 9061270 12 105 2.5 1.0 1.8 4.3 136 chr3L 9061134 intron Argk - chr3L 9061202 intron Argk - chr3L 9061270 intron Argk - chr3L_12_9060001 chr3L_9060001 RAL-28 591 chr3L 9076932 9076957 chr3L 9084491 9084517 412 7 7560 3.0 3.0 3.0 1.8 7585 chr3L 9076932 exon Tequila + chr3L 9080724 intron Tequila + chr3L 9084517 exon Tequila + chr3L_7_9080001 chr3L_9080001 RAL-28 592 chr3L 9130557 9130577 chr3L 9134317 9134338 412 5 3760 4.5 2.0 3.2 1.2 3781 chr3L 9130557 intergenic bol - chr3L 9132448 intergenic not near genes chr3L 9134338 intergenic Dhpr + chr3L_5_9130001 chr3L_9130001 RAL-28 593 chr3L 9219253 9219257 chr3L 9219916 9219929 jockey 4 670 4.0 3.5 3.8 0.8 676 chr3L 9219253 intergenic not near genes chr3L 9219591 intergenic not near genes chr3L 9219929 intergenic not near genes chr3L_4_9215001 chr3L_9215001 RAL-28 594 chr3L 9269650 9269659 chr3L 9269731 9269740 4 81 1.0 2.0 1.5 1.6 90 chr3L 9269650 intron GluRIB + chr3L 9269695 intron GluRIB + chr3L 9269740 intron GluRIB + chr3L_4_9265001 chr3L_9265001 RAL-28 595 chr3L 9533782 9533786 chr3L 9541319 9541346 412 4 7554 1.5 3.5 2.5 1.1 7564 chr3L 9533782 intergenic not near genes chr3L 9537564 intergenic not near genes chr3L 9541346 intergenic not near genes chr3L_4_9535001 chr3L_9535001 RAL-28 596 chr3L 9575906 9575932 chr3L 9580984 9581001 jockey 6 5072 3.0 2.0 2.5 1.7 5095 chr3L 9575906 intron CG42673 + chr3L 9578454 intron CG42673 + chr3L 9581001 intron CG42673 + chr3L_6_9575001 chr3L_9575001 RAL-28 597 chr3L 9745489 9745515 chr3L 9745570 9745601 7 85 1.0 2.0 1.5 2.8 112 chr3L 9745489 intron CG42268 - chr3L 9745545 intron CG42268 - chr3L 9745601 intron CG42268 - chr3L_7_9745001 chr3L_9745001 RAL-28 598 chr3L 10096268 10096299 chr3L 10096437 10096463 8 168 2.5 1.5 2.0 2.7 195 chr3L 10096268 intron,exon dpr6 +,CG42825 - chr3L 10096366 intron,exon dpr6 +,CG42825 - chr3L 10096463 intron,exon dpr6 +,CG42825 - chr3L_8_10095001 chr3L_10095001 RAL-28 599 chr3L 10175884 10175893 chr3L 10176111 10176120 6 227 0.0 2.0 1.0 3.0 236 chr3L 10175884 intron dpr10 - chr3L 10176002 intron dpr10 - chr3L 10176120 intron dpr10 - chr3L_6_10175001 chr3L_10175001 RAL-28 600 chr3L 10191295 10191318 chr3L 10191404 10191429 6 110 3.0 4.0 3.5 1.3 134 chr3L 10191295 intron ect - chr3L 10191362 intron ect - chr3L 10191429 intron ect - chr3L_6_10190001 chr3L_10190001 RAL-28 601 chr3L 10214813 10214826 chr3L 10214915 10214928 6 101 2.5 1.5 2.0 2.0 115 chr3L 10214813 intergenic not near genes chr3L 10214870 intergenic not near genes chr3L 10214928 intergenic not near genes chr3L_6_10210001 chr3L_10210001 RAL-28 602 chr3L 10308746 10308773 chr3L 10308814 10308850 6 76 2.0 3.0 2.5 1.7 104 chr3L 10308746 intergenic not near genes chr3L 10308798 intergenic not near genes chr3L 10308850 intergenic not near genes chr3L_6_10305001 chr3L_10305001 RAL-28 603 chr3L 10417575 10417603 chr3L 10417643 10417680 8 74 1.5 4.0 2.8 2.1 105 chr3L 10417575 intergenic not near genes chr3L 10417628 intergenic not near genes chr3L 10417680 intergenic not near genes chr3L_8_10415001 chr3L_10415001 RAL-28 604 chr3L 10658083 10658203 chr3L 10658160 10658330 9 110 1.0 1.0 1.0 4.5 247 chr3L 10658083 intron CG32066 - chr3L 10658206 intron CG32066 - chr3L 10658330 intron CG32066 - chr3L_9_10655001 chr3L_10655001 RAL-28 605 chr3L 10913023 10913062 chr3L 10913120 10913150 7 88 1.0 1.5 1.2 3.2 127 chr3L 10913023 intergenic not near genes chr3L 10913086 intergenic not near genes chr3L 10913150 intergenic not near genes chr3L_7_10910001 chr3L_10910001 RAL-28 606 chr3L 11105302 11105326 chr3L 11107012 11107036 X-element 6 1710 2.5 5.0 3.8 1.2 1734 chr3L 11105302 intergenic not near genes chr3L 11106169 intergenic not near genes chr3L 11107036 exon CG32073 - chr3L_6_11105001 chr3L_11105001 RAL-28 607 chr3L 11340540 11340555 chr3L 11340649 11340652 5 108 2.0 2.5 2.2 1.6 112 chr3L 11340540 intergenic not near genes chr3L 11340596 intergenic not near genes chr3L 11340652 intergenic not near genes chr3L_5_11340001 chr3L_11340001 RAL-28 608 chr3L 11379361 11379385 chr3L 11379440 11379464 4 80 1.5 3.5 2.5 1.1 103 chr3L 11379361 intergenic not near genes chr3L 11379412 intergenic not near genes chr3L 11379464 intergenic not near genes chr3L_4_11375001 chr3L_11375001 RAL-28 609 chr3L 11383963 11383997 chr3L 11384041 11384073 7 65 2.0 1.5 1.8 2.5 110 chr3L 11383963 intron CR42755 - chr3L 11384018 3` UTR CR42755 - chr3L 11384073 3` UTR CR42755 - chr3L_7_11380001 chr3L_11380001 RAL-28 610 chr3L 11404833 11404848 chr3L 11404948 11404955 4 112 0.5 0.5 0.5 2.7 122 chr3L 11404833 intergenic not near genes chr3L 11404894 intergenic not near genes chr3L 11404955 intergenic not near genes chr3L_4_11400001 chr3L_11400001 RAL-28 611 chr3L 11723083 11723113 chr3L 11727878 11727908 Doc 6 4795 2.5 1.5 2.0 2.0 4825 chr3L 11723083 3` UTR Bmcp + chr3L 11725496 intron Bmcp + chr3L 11727908 3` UTR Bmcp + chr3L_6_11725001 chr3L_11725001 RAL-28 612 chr3L 11744011 11744040 chr3L 11744118 11744138 10 107 3.0 0.0 1.5 4.0 127 chr3L 11744011 exon CG6024 - chr3L 11744074 intron CG6024 - chr3L 11744138 intron CG6024 - chr3L_10_11740001 chr3L_11740001 RAL-28 613 chr3L 11752882 11752895 chr3L 11752961 11752974 4 78 2.0 2.0 2.0 1.3 92 chr3L 11752882 intron CG6024 - chr3L 11752928 intron CG6024 - chr3L 11752974 intron CG6024 - chr3L_4_11750001 chr3L_11750001 RAL-28 614 chr3L 11846400 11846414 chr3L 11846520 11846534 5 119 0.0 0.0 0.0 5.0 134 chr3L 11846400 intergenic not near genes chr3L 11846467 intergenic not near genes chr3L 11846534 intergenic not near genes chr3L_5_11845001 chr3L_11845001 RAL-28 615 chr3L 11849347 11849355 chr3L 11849445 11849455 4 98 0.5 5.0 2.8 1.1 108 chr3L 11849347 intergenic not near genes chr3L 11849401 intergenic not near genes chr3L 11849455 intergenic not near genes chr3L_4_11845001 chr3L_11845001 RAL-28 616 chr3L 11974334 11974367 chr3L 11974414 11974447 6 80 0.0 0.0 0.0 6.0 113 chr3L 11974334 intergenic not near genes chr3L 11974390 intergenic not near genes chr3L 11974447 intergenic CG14125 + chr3L_6_11970001 chr3L_11970001 RAL-28 617 chr3L 12013919 12013930 chr3L 12014009 12014021 5 91 3.5 2.0 2.8 1.3 102 chr3L 12013919 intron rols - chr3L 12013970 intron rols - chr3L 12014021 intron rols - chr3L_5_12010001 chr3L_12010001 RAL-28 618 chr3L 12052709 12052733 chr3L 12052798 12052820 4 88 3.0 1.0 2.0 1.3 111 chr3L 12052709 intron rols - chr3L 12052764 intron rols - chr3L 12052820 intron rols - chr3L_4_12050001 chr3L_12050001 RAL-28 619 chr3L 12119763 12119777 chr3L 12119860 12119874 5 97 0.5 0.5 0.5 3.3 111 chr3L 12119763 3` UTR ssp + chr3L 12119818 intergenic ssp +,CG11560 + chr3L 12119874 intergenic ssp +,CG11560 + chr3L_5_12115001 chr3L_12115001 RAL-28 620 chr3L 12126391 12126403 chr3L 12126586 12126598 4 195 26.0 20.0 23.0 0.2 207 chr3L 12126391 exon Ir68b - chr3L 12126494 exon Ir68b - chr3L 12126598 exon Ir68b - chr3L_4_12125001 chr3L_12125001 RAL-28 621 chr3L 12249993 12250008 chr3L 12250118 12250136 5 128 3.5 5.5 4.5 0.9 143 chr3L 12249993 intron app - chr3L 12250064 intron app - chr3L 12250136 intron app - chr3L_5_12250001 chr3L_12250001 RAL-28 622 chr3L 12491705 12491708 chr3L 12491786 12491791 4 82 0.0 0.5 0.2 3.3 86 chr3L 12491705 intergenic CG10657 -,CR45682 + chr3L 12491748 intergenic CG10657 -,CR45682 + chr3L 12491791 intergenic CG10657 -,CR45682 + chr3L_4_12490001 chr3L_12490001 RAL-28 623 chr3L 12610995 12611020 chr3L 12611241 12611266 5 246 0.5 1.5 1.0 2.5 271 chr3L 12610995 intron caup + chr3L 12611130 intron caup + chr3L 12611266 intron caup + chr3L_5_12610001 chr3L_12610001 RAL-28 624 chr3L 12919274 12919309 chr3L 12924747 12924766 Rt1c 6 5469 2.5 2.5 2.5 1.7 5492 chr3L 12919274 intergenic not near genes chr3L 12922020 intergenic not near genes chr3L 12924766 intergenic not near genes chr3L_6_12920001 chr3L_12920001 RAL-28 625 chr3L 12948028 12948049 chr3L 12948106 12948127 9 76 1.5 2.5 2.0 3.0 99 chr3L 12948028 intergenic not near genes chr3L 12948078 intergenic not near genes chr3L 12948127 intergenic not near genes chr3L_9_12945001 chr3L_12945001 RAL-28 626 chr3L 12957787 12957809 chr3L 12962269 12962291 copia 5 4482 1.5 2.5 2.0 1.7 4504 chr3L 12957787 intergenic not near genes chr3L 12960039 intergenic not near genes chr3L 12962291 intergenic not near genes chr3L_5_12960001 chr3L_12960001 RAL-28 627 chr3L 12968180 12968208 chr3L 12968265 12968293 7 83 3.0 3.5 3.2 1.7 113 chr3L 12968180 intergenic Or69a - chr3L 12968236 intergenic not near genes chr3L 12968293 intergenic not near genes chr3L_7_12965001 chr3L_12965001 RAL-28 628 chr3L 13067538 13067564 chr3L 13067614 13067640 4 76 1.5 0.5 1.0 2.0 102 chr3L 13067538 intergenic not near genes chr3L 13067589 intergenic not near genes chr3L 13067640 intergenic not near genes chr3L_4_13065001 chr3L_13065001 RAL-28 629 chr3L 13194068 13194099 chr3L 13194145 13194177 7 78 1.5 2.0 1.8 2.5 109 chr3L 13194068 intergenic not near genes chr3L 13194122 intergenic not near genes chr3L 13194177 intergenic not near genes chr3L_7_13190001 chr3L_13190001 RAL-28 630 chr3L 13629533 13629545 chr3L 13629644 13629656 5 111 1.5 7.5 4.5 0.9 123 chr3L 13629533 intron bru-3 - chr3L 13629594 intron bru-3 - chr3L 13629656 intron bru-3 - chr3L_5_13625001 chr3L_13625001 RAL-28 631 chr3L 13677536 13677558 chr3L 13677613 13677635 4 77 0.0 0.5 0.2 3.3 99 chr3L 13677536 intron bru-3 - chr3L 13677586 intron bru-3 - chr3L 13677635 intron bru-3 - chr3L_4_13675001 chr3L_13675001 RAL-28 632 chr3L 13901575 13901601 chr3L 13901651 13901677 11 76 1.0 2.5 1.8 3.9 102 chr3L 13901575 intron dysc - chr3L 13901626 intron dysc - chr3L 13901677 intron dysc - chr3L_11_13900001 chr3L_13900001 RAL-28 633 chr3L 14356519 14356549 chr3L 14356599 14356625 8 76 2.5 2.0 2.2 2.5 106 chr3L 14356519 intron fz + chr3L 14356572 intron fz + chr3L 14356625 intron fz + chr3L_8_14355001 chr3L_14355001 RAL-28 634 chr3L 14468463 14468475 chr3L 14473666 14473681 copia 4 5205 1.5 1.5 1.5 1.6 5218 chr3L 14468463 intron bbg - chr3L 14471072 intron bbg - chr3L 14473681 intron bbg - chr3L_4_14470001 chr3L_14470001 RAL-28 635 chr3L 14522108 14522130 chr3L 14522205 14522221 5 97 0.5 1.0 0.8 2.8 113 chr3L 14522108 intron bbg - chr3L 14522164 intron bbg - chr3L 14522221 intron bbg - chr3L_5_14520001 chr3L_14520001 RAL-28 636 chr3L 14584167 14584188 chr3L 14584254 14584275 7 87 1.0 5.0 3.0 1.8 108 chr3L 14584167 intron HGTX - chr3L 14584221 intron HGTX - chr3L 14584275 intron HGTX - chr3L_7_14580001 chr3L_14580001 RAL-28 637 chr3L 14633785 14633806 chr3L 14633881 14633902 6 94 1.5 1.0 1.2 2.7 117 chr3L 14633785 intron dlp + chr3L 14633844 intron dlp + chr3L 14633902 intron dlp + chr3L_6_14630001 chr3L_14630001 RAL-28 638 chr3L 15085050 15085073 chr3L 15086216 15086235 1360 6 1162 1.0 1.5 1.2 2.7 1185 chr3L 15085050 intron cp309 - chr3L 15085642 intron cp309 - chr3L 15086235 intron cp309 - chr3L_6_15085001 chr3L_15085001 RAL-28 639 chr3L 15209076 15209098 chr3L 15209162 15209184 6 85 1.5 1.0 1.2 2.7 108 chr3L 15209076 intergenic CG6888 + chr3L 15209130 intergenic not near genes chr3L 15209184 intergenic not near genes chr3L_6_15205001 chr3L_15205001 RAL-28 640 chr3L 15366930 15366943 chr3L 15367064 15367078 7 135 1.5 2.5 2.0 2.3 148 chr3L 15366930 intergenic not near genes chr3L 15367004 intergenic not near genes chr3L 15367078 intergenic not near genes chr3L_7_15365001 chr3L_15365001 RAL-28 641 chr3L 15466037 15466122 chr3L 15466119 15466218 5 85 0.0 0.0 0.0 5.0 181 chr3L 15466037 intergenic not near genes chr3L 15466128 intergenic not near genes chr3L 15466218 intergenic not near genes chr3L_5_15465001 chr3L_15465001 RAL-28 642 chr3L 15883198 15883223 chr3L 15883490 15883501 5 287 0.5 2.0 1.2 2.3 303 chr3L 15883198 intron pHCl - chr3L 15883350 intron pHCl - chr3L 15883501 intron pHCl - chr3L_5_15880001 chr3L_15880001 RAL-28 643 chr3L 15899234 15899249 chr3L 15899801 15899815 jockey 4 566 2.5 3.0 2.8 1.1 581 chr3L 15899234 intergenic pHCl - chr3L 15899524 intergenic pHCl - chr3L 15899815 intergenic sff - chr3L_4_15895001 chr3L_15895001 RAL-28 644 chr3L 15966524 15966561 chr3L 15968916 15968951 20 2390 22.5 23.5 23.0 0.8 2427 chr3L 15966524 exon l(3)72Ab - chr3L 15967738 exon l(3)72Ab - chr3L 15968951 intron CG10516 + chr3L_20_15965001 chr3L_15965001 RAL-28 645 chr3L 16070741 16070762 chr3L 16070818 16070839 4 77 0.5 0.0 0.2 3.3 98 chr3L 16070741 intron Mbs + chr3L 16070790 intron Mbs + chr3L 16070839 exon Mbs + chr3L_4_16070001 chr3L_16070001 RAL-28 646 chr3L 16072672 16072679 chr3L 16072794 16072817 4 134 1.5 2.0 1.8 1.4 145 chr3L 16072672 intron Mbs + chr3L 16072744 intron Mbs + chr3L 16072817 intron Mbs + chr3L_4_16070001 chr3L_16070001 RAL-28 647 chr3L 16158805 16158832 chr3L 16158890 16158917 11 85 0.0 0.0 0.0 11.0 112 chr3L 16158805 intron CG5151 - chr3L 16158861 intron CG5151 - chr3L 16158917 intron CG5151 - chr3L_11_16155001 chr3L_16155001 RAL-28 648 chr3L 16304864 16304892 chr3L 16304942 16304970 8 78 1.0 1.5 1.2 3.6 106 chr3L 16304864 intergenic CG43249 +,CG13043 - chr3L 16304917 intergenic CG43249 +,CG13043 - chr3L 16304970 intergenic CG13043 -,CG43249 + chr3L_8_16300001 chr3L_16300001 RAL-28 649 chr3L 16437072 16437103 chr3L 16437150 16437188 6 84 1.5 0.0 0.8 3.3 116 chr3L 16437072 intron,intron CG33158 +,dsx-c73A - chr3L 16437130 intron,intron CG33158 +,dsx-c73A - chr3L 16437188 intron,intron CG33158 +,dsx-c73A - chr3L_6_16435001 chr3L_16435001 RAL-28 650 chr3L 16443848 16443878 chr3L 16446188 16446217 Doc 4 2339 1.0 2.5 1.8 1.4 2369 chr3L 16443848 intron,intron CG33158 +,dsx-c73A - chr3L 16445032 intron,intron CG33158 +,dsx-c73A - chr3L 16446217 intron,intron CG33158 +,dsx-c73A - chr3L_4_16445001 chr3L_16445001 RAL-28 651 chr3L 16457530 16457555 chr3L 16457625 16457650 4 95 1.0 1.5 1.2 1.8 120 chr3L 16457530 intron CG33158 + chr3L 16457590 intron CG33158 + chr3L 16457650 intron CG33158 + chr3L_4_16455001 chr3L_16455001 RAL-28 652 chr3L 16493998 16494005 chr3L 16494514 16494517 jockey 4 516 3.0 4.0 3.5 0.9 519 chr3L 16493998 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494258 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494517 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_4_16490001 chr3L_16490001 RAL-28 653 chr3L 16533572 16533580 chr3L 16533683 16533691 4 111 1.5 2.0 1.8 1.4 119 chr3L 16533572 intron CG43373 - chr3L 16533632 intron CG43373 - chr3L 16533691 intron CG43373 - chr3L_4_16530001 chr3L_16530001 RAL-28 654 chr3L 16632814 16632837 chr3L 16633219 16633242 4 405 0.0 1.0 0.5 2.7 428 chr3L 16632814 intron Abl - chr3L 16633028 intron Abl - chr3L 16633242 intron Abl - chr3L_4_16630001 chr3L_16630001 RAL-28 655 chr3L 16659103 16659130 chr3L 16659181 16659208 9 75 4.5 2.5 3.5 2.0 105 chr3L 16659103 intron Baldspot - chr3L 16659156 intron Baldspot - chr3L 16659208 intron Baldspot - chr3L_9_16655001 chr3L_16655001 RAL-28 656 chr3L 16768208 16768219 chr3L 16768695 16768706 4 487 2.5 0.0 1.2 1.8 498 chr3L 16768208 intron Nrt + chr3L 16768457 intron Nrt + chr3L 16768706 intron Nrt + chr3L_4_16765001 chr3L_16765001 RAL-28 657 chr3L 16786975 16786999 chr3L 16787051 16787075 7 75 0.0 1.5 0.8 3.9 100 chr3L 16786975 intergenic Int6 - chr3L 16787025 intergenic Int6 - chr3L 16787075 intergenic Int6 -,CG9674 - chr3L_7_16785001 chr3L_16785001 RAL-28 658 chr3L 16818759 16818777 chr3L 16818835 16818853 5 76 2.0 2.5 2.2 1.6 94 chr3L 16818759 intron,intron nudC +,CG13024 - chr3L 16818806 intron,intron nudC +,CG13024 - chr3L 16818853 intron,intron nudC +,CG13024 - chr3L_5_16815001 chr3L_16815001 RAL-28 659 chr3L 16870880 16870898 chr3L 16870971 16870989 4 91 1.0 2.0 1.5 1.6 109 chr3L 16870880 intron Lmpt + chr3L 16870934 intron Lmpt + chr3L 16870989 intron Lmpt + chr3L_4_16870001 chr3L_16870001 RAL-28 660 chr3L 16873344 16873362 chr3L 16873449 16873467 7 105 1.5 1.0 1.2 3.2 123 chr3L 16873344 intron Lmpt + chr3L 16873406 intron Lmpt + chr3L 16873467 intron Lmpt + chr3L_7_16870001 chr3L_16870001 RAL-28 661 chr3L 16894983 16894992 chr3L 16895049 16895077 5 81 0.0 0.5 0.2 4.2 94 chr3L 16894983 intron Lmpt + chr3L 16895030 intron Lmpt + chr3L 16895077 intron Lmpt + chr3L_5_16895001 chr3L_16895001 RAL-28 662 chr3L 16926106 16926127 chr3L 16926183 16926204 5 77 2.0 2.0 2.0 1.7 98 chr3L 16926106 intron CG13023 - chr3L 16926155 intron CG13023 - chr3L 16926204 intron CG13023 - chr3L_5_16925001 chr3L_16925001 RAL-28 663 chr3L 16945727 16945760 chr3L 16954880 16954891 roo 13 9150 4.5 0.5 2.5 3.7 9164 chr3L 16945727 exon Obp73a + chr3L 16950309 intergenic not near genes chr3L 16954891 5` UTR Nc73EF + chr3L_13_16950001 chr3L_16950001 RAL-28 664 chr3L 17026791 17026823 chr3L 17026871 17026904 5 81 1.0 3.0 2.0 1.7 113 chr3L 17026791 exon Fit2 + chr3L 17026848 3` UTR Fit2 + chr3L 17026904 3` UTR Fit2 + chr3L_5_17025001 chr3L_17025001 RAL-28 665 chr3L 17085008 17085036 chr3L 17094157 17094185 roo 9 9149 2.5 1.0 1.8 3.2 9177 chr3L 17085008 intron Rbp6 - chr3L 17089596 intron Rbp6 - chr3L 17094185 intron Rbp6 - chr3L_9_17085001 chr3L_17085001 RAL-28 666 chr3L 17120656 17120668 chr3L 17120732 17120744 5 75 2.0 1.0 1.5 2.0 88 chr3L 17120656 intron Rbp6 - chr3L 17120700 intron Rbp6 - chr3L 17120744 intron Rbp6 - chr3L_5_17120001 chr3L_17120001 RAL-28 667 chr3L 17146951 17146984 chr3L 17147033 17147066 5 81 0.5 2.0 1.2 2.3 115 chr3L 17146951 intron Rbp6 - chr3L 17147008 intron Rbp6 - chr3L 17147066 intron Rbp6 - chr3L_5_17145001 chr3L_17145001 RAL-28 668 chr3L 17149163 17149184 chr3L 17149244 17149265 5 80 3.5 0.0 1.8 1.8 102 chr3L 17149163 intron Rbp6 - chr3L 17149214 intron Rbp6 - chr3L 17149265 intron Rbp6 - chr3L_5_17145001 chr3L_17145001 RAL-28 669 chr3L 17178300 17178335 chr3L 17178424 17178459 4 124 1.0 1.5 1.2 1.8 159 chr3L 17178300 intron Rbp6 - chr3L 17178380 intron Rbp6 - chr3L 17178459 intron Rbp6 - chr3L_4_17175001 chr3L_17175001 RAL-28 670 chr3L 17317028 17317043 chr3L 17317565 17317592 7 542 16.0 20.5 18.2 0.4 564 chr3L 17317028 intergenic not near genes chr3L 17317310 intergenic not near genes chr3L 17317592 intergenic not near genes chr3L_7_17315001 chr3L_17315001 RAL-28 671 chr3L 17331072 17331095 chr3L 17331162 17331184 6 90 1.5 0.5 1.0 3.0 112 chr3L 17331072 intergenic not near genes chr3L 17331128 intergenic not near genes chr3L 17331184 intergenic not near genes chr3L_6_17330001 chr3L_17330001 RAL-28 672 chr3L 17367439 17367456 chr3L 17367533 17367550 6 94 2.5 3.0 2.8 1.6 111 chr3L 17367439 intergenic CR45688 +,Cad74A - chr3L 17367494 intergenic CR45688 +,Cad74A - chr3L 17367550 intergenic CR45688 +,Cad74A - chr3L_6_17365001 chr3L_17365001 RAL-28 673 chr3L 17430467 17430494 chr3L 17430543 17430548 7 73 1.5 2.5 2.0 2.3 81 chr3L 17430467 intron,3` UTR CG32174 -,frc - chr3L 17430508 intron,3` UTR CG32174 -,frc - chr3L 17430548 intron,3` UTR CG32174 -,frc - chr3L_7_17430001 chr3L_17430001 RAL-28 674 chr3L 17510733 17510749 chr3L 17510817 17510833 5 84 1.0 3.5 2.2 1.6 100 chr3L 17510733 exon Oatp74D + chr3L 17510783 intron Oatp74D + chr3L 17510833 intron Oatp74D + chr3L_5_17510001 chr3L_17510001 RAL-28 675 chr3L 17799811 17799835 chr3L 17801598 17801622 S-element 4 1787 0.5 0.5 0.5 2.7 1811 chr3L 17799811 intron NUCB1 - chr3L 17800716 intron NUCB1 - chr3L 17801622 intron NUCB1 - chr3L_4_17800001 chr3L_17800001 RAL-28 676 chr3L 17929153 17929177 chr3L 17929483 17929509 4 332 12.5 9.5 11.0 0.3 356 chr3L 17929153 intergenic not near genes chr3L 17929331 intergenic not near genes chr3L 17929509 intergenic not near genes chr3L_4_17925001 chr3L_17925001 RAL-28 677 chr3L 18029962 18029978 chr3L 18030039 18030053 4 76 0.5 0.0 0.2 3.3 91 chr3L 18029962 intron Eip75B - chr3L 18030008 intron Eip75B - chr3L 18030053 intron Eip75B - chr3L_4_18030001 chr3L_18030001 RAL-28 678 chr3L 18119670 18119679 chr3L 18119768 18119777 6 98 0.0 5.0 2.5 1.7 107 chr3L 18119670 intron CG7341 + chr3L 18119724 intron CG7341 + chr3L 18119777 intron CG7341 + chr3L_6_18115001 chr3L_18115001 RAL-28 679 chr3L 18223171 18223188 chr3L 18223254 18223269 4 82 2.0 0.0 1.0 2.0 98 chr3L 18223171 intergenic not near genes chr3L 18223220 intergenic not near genes chr3L 18223269 intergenic not near genes chr3L_4_18220001 chr3L_18220001 RAL-28 680 chr3L 18248974 18248980 chr3L 18249072 18249078 4 98 1.5 4.0 2.8 1.1 104 chr3L 18248974 intergenic not near genes chr3L 18249026 intergenic not near genes chr3L 18249078 intergenic not near genes chr3L_4_18245001 chr3L_18245001 RAL-28 681 chr3L 18408736 18408758 chr3L 18408822 18408844 6 86 0.5 1.5 1.0 3.0 108 chr3L 18408736 intergenic not near genes chr3L 18408790 intergenic not near genes chr3L 18408844 intergenic not near genes chr3L_6_18405001 chr3L_18405001 RAL-28 682 chr3L 18456272 18456298 chr3L 18456360 18456386 5 88 2.0 1.0 1.5 2.0 114 chr3L 18456272 intergenic CR44670 - chr3L 18456329 intergenic CR44670 - chr3L 18456386 intergenic CR44670 - chr3L_5_18455001 chr3L_18455001 RAL-28 683 chr3L 18464489 18464512 chr3L 18464574 18464583 10 80 1.0 5.5 3.2 2.4 94 chr3L 18464489 intergenic not near genes chr3L 18464536 intergenic not near genes chr3L 18464583 intergenic not near genes chr3L_10_18460001 chr3L_18460001 RAL-28 684 chr3L 18497377 18497395 chr3L 18497521 18497539 5 144 0.5 2.0 1.2 2.3 162 chr3L 18497377 intron AstC-R2 - chr3L 18497458 intron AstC-R2 - chr3L 18497539 intron AstC-R2 - chr3L_5_18495001 chr3L_18495001 RAL-28 685 chr3L 18546715 18546737 chr3L 18546807 18546831 6 93 1.0 0.5 0.8 3.3 116 chr3L 18546715 intergenic not near genes chr3L 18546773 intergenic not near genes chr3L 18546831 intergenic not near genes chr3L_6_18545001 chr3L_18545001 RAL-28 686 chr3L 18581344 18581364 chr3L 18581420 18581440 5 76 0.5 3.5 2.0 1.7 96 chr3L 18581344 intergenic not near genes chr3L 18581392 intergenic not near genes chr3L 18581440 intergenic not near genes chr3L_5_18580001 chr3L_18580001 RAL-28 687 chr3L 18656191 18656216 chr3L 18656276 18656300 8 85 1.0 3.5 2.2 2.5 109 chr3L 18656191 intron MYPT-75D + chr3L 18656246 intron MYPT-75D + chr3L 18656300 intron MYPT-75D + chr3L_8_18655001 chr3L_18655001 RAL-28 688 chr3L 18665214 18665227 chr3L 18665299 18665312 4 85 3.5 0.0 1.8 1.4 98 chr3L 18665214 intron MYPT-75D + chr3L 18665263 intron MYPT-75D + chr3L 18665312 intron MYPT-75D + chr3L_4_18665001 chr3L_18665001 RAL-28 689 chr3L 18682636 18682665 chr3L 18682837 18682868 7 201 11.0 13.0 12.0 0.5 232 chr3L 18682636 exon CG32202 + chr3L 18682752 exon CG32202 + chr3L 18682868 intergenic CG32202 +,Chmp1 - chr3L_7_18680001 chr3L_18680001 RAL-28 690 chr3L 18772406 18772429 chr3L 18781087 18781110 roo 7 8681 3.0 1.0 2.0 2.3 8704 chr3L 18772406 intron ftz-f1 - chr3L 18776758 intron ftz-f1 - chr3L 18781110 intron ftz-f1 - chr3L_7_18775001 chr3L_18775001 RAL-28 691 chr3L 18832618 18832646 chr3L 18832692 18832718 5 72 0.0 3.5 1.8 1.8 100 chr3L 18832618 intron Indy - chr3L 18832668 intron Indy - chr3L 18832718 intron Indy - chr3L_5_18830001 chr3L_18830001 RAL-28 692 chr3L 18833784 18833807 chr3L 18834947 18834971 1360 6 1163 2.0 1.5 1.8 2.1 1187 chr3L 18833784 intron Indy - chr3L 18834378 intron Indy - chr3L 18834971 intron Indy - chr3L_6_18830001 chr3L_18830001 RAL-28 693 chr3L 18839739 18839759 chr3L 18839821 18839841 5 82 1.5 2.0 1.8 1.8 102 chr3L 18839739 intron Indy - chr3L 18839790 intron Indy - chr3L 18839841 intron Indy - chr3L_5_18835001 chr3L_18835001 RAL-28 694 chr3L 18924498 18924507 chr3L 18924574 18924583 5 76 0.5 2.0 1.2 2.3 85 chr3L 18924498 intron CG32204 - chr3L 18924540 intron CG32204 - chr3L 18924583 intron CG32204 - chr3L_5_18920001 chr3L_18920001 RAL-28 695 chr3L 19115636 19115656 chr3L 19115813 19115832 BS 4 176 3.0 0.0 1.5 1.6 196 chr3L 19115636 intron CG14082 - chr3L 19115734 intron CG14082 - chr3L 19115832 intron CG14082 - chr3L_4_19115001 chr3L_19115001 RAL-28 696 chr3L 19117057 19117072 chr3L 19124499 19124519 mdg1 6 7445 3.5 3.0 3.2 1.4 7462 chr3L 19117057 intron CG14082 - chr3L 19120788 intron CG14082 - chr3L 19124519 intron CG14082 - chr3L_6_19120001 chr3L_19120001 RAL-28 697 chr3L 19187324 19187342 chr3L 19187458 19187473 5 133 2.0 3.0 2.5 1.4 149 chr3L 19187324 intron fz2 - chr3L 19187398 intron fz2 - chr3L 19187473 intron fz2 - chr3L_5_19185001 chr3L_19185001 RAL-28 698 chr3L 19208065 19208092 chr3L 19209435 19209453 Doc 7 1371 2.5 1.5 2.0 2.3 1388 chr3L 19208065 intron fz2 - chr3L 19208759 intron fz2 - chr3L 19209453 intron fz2 - chr3L_7_19205001 chr3L_19205001 RAL-28 699 chr3L 19269679 19269687 chr3L 19269831 19269839 4 152 2.5 3.0 2.8 1.1 160 chr3L 19269679 intron CG14085 + chr3L 19269759 intron CG14085 + chr3L 19269839 intron,exon CG14085 +,CG14088 - chr3L_4_19265001 chr3L_19265001 RAL-28 700 chr3L 19404975 19404985 chr3L 19405052 19405062 4 76 2.0 2.0 2.0 1.3 87 chr3L 19404975 intron CG32206 - chr3L 19405018 intron CG32206 - chr3L 19405062 intron CG32206 - chr3L_4_19405001 chr3L_19405001 RAL-28 701 chr3L 19404986 19405002 chr3L 19405051 19405079 7 71 1.5 2.0 1.8 2.5 93 chr3L 19404986 intron CG32206 - chr3L 19405032 intron CG32206 - chr3L 19405079 intron CG32206 - chr3L_7_19405001 chr3L_19405001 RAL-28 702 chr3L 19426750 19426780 chr3L 19426828 19426857 6 76 2.0 1.5 1.8 2.1 107 chr3L 19426750 intergenic not near genes chr3L 19426804 intergenic not near genes chr3L 19426857 intergenic not near genes chr3L_6_19425001 chr3L_19425001 RAL-28 703 chr3L 19488478 19488502 chr3L 19488559 19488584 4 82 2.0 1.0 1.5 1.6 106 chr3L 19488478 intergenic pncr009:3L -,CG32212 + chr3L 19488531 intergenic pncr009:3L -,CG32212 + chr3L 19488584 intergenic pncr009:3L -,CG32212 + chr3L_4_19485001 chr3L_19485001 RAL-28 704 chr3L 19493316 19493323 chr3L 19493391 19493399 4 76 1.0 1.0 1.0 2.0 83 chr3L 19493316 intron CG9449 - chr3L 19493358 intron CG9449 - chr3L 19493399 intron CG9449 - chr3L_4_19490001 chr3L_19490001 RAL-28 705 chr3L 19582148 19582186 chr3L 19582405 19582431 5 254 2.0 0.5 1.2 2.3 283 chr3L 19582148 intron Shal - chr3L 19582290 intron Shal - chr3L 19582431 intron Shal - chr3L_5_19580001 chr3L_19580001 RAL-28 706 chr3L 19784698 19784714 chr3L 19784775 19784789 5 75 2.0 1.5 1.8 1.8 91 chr3L 19784698 intron,intron CG42637 -,Gyc76C - chr3L 19784744 intron,intron CG42637 -,Gyc76C - chr3L 19784789 intron,intron CG42637 -,Gyc76C - chr3L_5_19780001 chr3L_19780001 RAL-28 707 chr3L 19846617 19846638 chr3L 19846715 19846736 5 98 1.0 1.0 1.0 2.5 119 chr3L 19846617 intron Papss + chr3L 19846676 intron Papss + chr3L 19846736 intron Papss + chr3L_5_19845001 chr3L_19845001 RAL-28 708 chr3L 19949910 19949920 chr3L 19950008 19950018 4 98 3.0 1.5 2.2 1.2 108 chr3L 19949910 intron Ac76E + chr3L 19949964 intron Ac76E + chr3L 19950018 intron Ac76E + chr3L_4_19945001 chr3L_19945001 RAL-28 709 chr3L 19981207 19981233 chr3L 19981287 19981304 4 78 1.5 1.0 1.2 1.8 97 chr3L 19981207 intergenic CG17732 + chr3L 19981256 intergenic CG17732 + chr3L 19981304 intergenic CG17732 + chr3L_4_19980001 chr3L_19980001 RAL-28 710 chr3L 20056272 20056287 chr3L 20056362 20056377 4 90 1.5 3.0 2.2 1.2 105 chr3L 20056272 intergenic not near genes chr3L 20056324 intergenic not near genes chr3L 20056377 intergenic not near genes chr3L_4_20055001 chr3L_20055001 RAL-28 711 chr3L 20113477 20113498 chr3L 20113572 20113593 5 95 0.5 1.5 1.0 2.5 116 chr3L 20113477 intergenic not near genes chr3L 20113535 intergenic not near genes chr3L 20113593 intergenic not near genes chr3L_5_20110001 chr3L_20110001 RAL-28 712 chr3L 20143078 20143116 chr3L 20143158 20143196 6 79 2.0 2.0 2.0 2.0 118 chr3L 20143078 intergenic not near genes chr3L 20143137 intergenic not near genes chr3L 20143196 intergenic not near genes chr3L_6_20140001 chr3L_20140001 RAL-28 713 chr3L 20257338 20257358 chr3L 20258458 20258478 pogo 4 1120 0.0 0.0 0.0 4.0 1140 chr3L 20257338 intron rdgC + chr3L 20257908 intron rdgC + chr3L 20258478 intron rdgC + chr3L_4_20255001 chr3L_20255001 RAL-28 714 chr3L 20315654 20315684 chr3L 20315733 20315764 7 78 1.0 0.0 0.5 4.7 110 chr3L 20315654 3` UTR,intron alphaSnap +,CR43875 - chr3L 20315709 3` UTR,intron alphaSnap +,CR43875 - chr3L 20315764 3` UTR,intron alphaSnap +,CR43875 - chr3L_7_20315001 chr3L_20315001 RAL-28 715 chr3L 20405574 20405605 chr3L 20405658 20405689 7 79 2.0 2.5 2.2 2.2 115 chr3L 20405574 intergenic not near genes chr3L 20405632 intergenic not near genes chr3L 20405689 intergenic not near genes chr3L_7_20405001 chr3L_20405001 RAL-28 716 chr3L 21014921 21014946 chr3L 21023402 21023427 Tirant 8 8477 2.0 4.5 3.2 1.9 8506 chr3L 21014921 intron skd - chr3L 21019174 intron skd - chr3L 21023427 intron skd - chr3L_8_21015001 chr3L_21015001 RAL-28 717 chr3L 21082209 21082239 chr3L 21082287 21082316 10 77 1.0 2.0 1.5 4.0 107 chr3L 21082209 intron ko - chr3L 21082262 intron ko - chr3L 21082316 intron ko - chr3L_10_21080001 chr3L_21080001 RAL-28 718 chr3L 21151871 21151893 chr3L 21156955 21156976 flea 4 5084 1.0 1.0 1.0 2.0 5105 chr3L 21151871 intron Ac78C - chr3L 21154424 intron Ac78C - chr3L 21156976 intron Ac78C - chr3L_4_21150001 chr3L_21150001 RAL-28 719 chr3L 21160961 21160990 chr3L 21161057 21161083 11 94 4.0 1.5 2.8 2.9 122 chr3L 21160961 5` UTR Ac78C - chr3L 21161022 intron Ac78C - chr3L 21161083 intron Ac78C - chr3L_11_21160001 chr3L_21160001 RAL-28 720 chr3L 21170059 21170086 chr3L 21170284 21170312 7 225 2.5 2.0 2.2 2.2 253 chr3L 21170059 intron Ac78C - chr3L 21170186 intron Ac78C - chr3L 21170312 intron Ac78C - chr3L_7_21170001 chr3L_21170001 RAL-28 721 chr3L 21276943 21276962 chr3L 21277027 21277030 4 79 0.5 2.0 1.2 1.8 87 chr3L 21276943 intron AcCoAS - chr3L 21276986 intron AcCoAS - chr3L 21277030 intron AcCoAS - chr3L_4_21275001 chr3L_21275001 RAL-28 722 chr3L 21306145 21306164 chr3L 21315304 21315323 roo 5 9159 0.5 2.0 1.2 2.3 9178 chr3L 21306145 3` UTR,3` UTR CG7632 +,Pc - chr3L 21310734 intron Pc - chr3L 21315323 3` UTR Pc - chr3L_5_21310001 chr3L_21310001 RAL-28 723 chr3L 21395144 21395174 chr3L 21395231 21395262 9 87 1.0 2.0 1.5 3.6 118 chr3L 21395144 intron rgn + chr3L 21395203 intron rgn + chr3L 21395262 intron rgn + chr3L_9_21395001 chr3L_21395001 RAL-28 724 chr3L 21498844 21498866 chr3L 21500471 21500502 1360 7 1634 1.0 3.5 2.2 2.2 1658 chr3L 21498844 intron Glg1 - chr3L 21499673 intron Glg1 - chr3L 21500502 intron Glg1 - chr3L_7_21495001 chr3L_21495001 RAL-28 725 chr3L 21799949 21799970 chr3L 21800034 21800055 5 84 0.5 2.0 1.2 2.3 106 chr3L 21799949 intergenic not near genes chr3L 21800002 intergenic not near genes chr3L 21800055 intergenic not near genes chr3L_5_21800001 chr3L_21800001 RAL-28 726 chr3L 21872428 21872451 chr3L 21872507 21872530 5 79 0.5 2.0 1.2 2.3 102 chr3L 21872428 intron mub + chr3L 21872479 intron mub + chr3L 21872530 intron mub + chr3L_5_21870001 chr3L_21870001 RAL-28 727 chr3L 21886390 21886419 chr3L 21886472 21886502 9 82 2.0 1.5 1.8 3.2 112 chr3L 21886390 intron,intron mub +,CR43878 - chr3L 21886446 intron,intron mub +,CR43878 - chr3L 21886502 intron,intron mub +,CR43878 - chr3L_9_21885001 chr3L_21885001 RAL-28 728 chr3L 21951206 21951229 chr3L 21951504 21951527 5 296 2.0 2.5 2.2 1.6 321 chr3L 21951206 exon CG7448 + chr3L 21951366 intron CG7448 + chr3L 21951527 exon CG7448 + chr3L_5_21950001 chr3L_21950001 RAL-28 729 chr3L 22038402 22038429 chr3L 22038591 22038615 5 188 1.0 1.0 1.0 2.5 213 chr3L 22038402 intron Oct-TyrR + chr3L 22038508 intron Oct-TyrR + chr3L 22038615 intron Oct-TyrR + chr3L_5_22035001 chr3L_22035001 RAL-28 730 chr3L 22099676 22099686 chr3L 22105862 22105872 3S18 5 6185 3.5 2.5 3.0 1.2 6196 chr3L 22099676 intergenic not near genes chr3L 22102774 intergenic not near genes chr3L 22105872 intergenic not near genes chr3L_5_22100001 chr3L_22100001 RAL-28 731 chr3L 22120057 22120081 chr3L 22120168 22120192 7 111 2.0 1.0 1.5 2.8 135 chr3L 22120057 intergenic not near genes chr3L 22120124 intergenic not near genes chr3L 22120192 intergenic not near genes chr3L_7_22120001 chr3L_22120001 RAL-28 732 chr3L 22124950 22124955 chr3L 22125106 22125110 4 156 4.5 2.0 3.2 1.0 160 chr3L 22124950 intergenic not near genes chr3L 22125030 intergenic not near genes chr3L 22125110 intergenic not near genes chr3L_4_22125001 chr3L_22125001 RAL-28 733 chr3L 22124962 22124975 chr3L 22125104 22125118 5 151 3.5 2.0 2.8 1.3 156 chr3L 22124962 intergenic not near genes chr3L 22125040 intergenic not near genes chr3L 22125118 intergenic not near genes chr3L_5_22125001 chr3L_22125001 RAL-28 734 chr3L 22223441 22223466 chr3L 22223600 22223602 4 153 3.0 4.0 3.5 0.9 161 chr3L 22223441 intron olf413 + chr3L 22223522 intron olf413 + chr3L 22223602 intron olf413 + chr3L_4_22220001 chr3L_22220001 RAL-28 735 chr3L 22241303 22241315 chr3L 22241385 22241397 5 80 1.5 3.0 2.2 1.6 94 chr3L 22241303 intron olf413 + chr3L 22241350 intron olf413 + chr3L 22241397 intron olf413 + chr3L_5_22240001 chr3L_22240001 RAL-28 736 chr3L 22411370 22411398 chr3L 22411446 22411475 5 69 4.0 1.5 2.8 1.3 105 chr3L 22411370 intergenic not near genes chr3L 22411422 intergenic not near genes chr3L 22411475 intergenic not near genes chr3L_5_22410001 chr3L_22410001 RAL-28 737 chr3L 22447200 22447219 chr3L 22447291 22447310 7 91 1.5 3.5 2.5 2.0 110 chr3L 22447200 intergenic not near genes chr3L 22447255 intergenic not near genes chr3L 22447310 intergenic not near genes chr3L_7_22445001 chr3L_22445001 RAL-28 738 chr3L 22577622 22577648 chr3L 22582405 22582436 Doc 7 4787 3.5 3.0 3.2 1.7 4814 chr3L 22577622 intergenic not near genes chr3L 22580029 intergenic not near genes chr3L 22582436 3` UTR CG14459 - chr3L_7_22580001 chr3L_22580001 RAL-28 739 chr3L 22853695 22853703 chr3L 22853781 22853789 5 85 2.0 1.0 1.5 2.0 94 chr3L 22853695 5` UTR CR43426 + chr3L 22853742 5` UTR CR43426 + chr3L 22853789 5` UTR CR43426 + chr3L_5_22850001 chr3L_22850001 RAL-28 740 chr3L 22896140 22896151 chr3L 22896216 22896227 4 76 1.5 0.5 1.0 2.0 87 chr3L 22896140 5` UTR CR44688 + chr3L 22896184 5` UTR CR44688 + chr3L 22896227 5` UTR CR44688 + chr3L_4_22895001 chr3L_22895001 RAL-28 741 chr3L 22909018 22909054 chr3L 22909109 22909145 11 89 1.5 4.5 3.0 2.8 127 chr3L 22909018 intergenic CR45661 + chr3L 22909082 intergenic CR45661 + chr3L 22909145 intergenic CR45661 + chr3L_11_22905001 chr3L_22905001 RAL-28 742 chr3L 22985305 22985333 chr3L 22985386 22985416 5 81 2.5 0.5 1.5 2.0 111 chr3L 22985305 intergenic not near genes chr3L 22985360 intergenic not near genes chr3L 22985416 intergenic not near genes chr3L_5_22985001 chr3L_22985001 RAL-28 743 chr3L 23182264 23182295 chr3L 23182378 23182409 7 113 3.5 3.0 3.2 1.7 145 chr3L 23182264 intron CG34031 + chr3L 23182336 intron CG34031 + chr3L 23182409 intron CG34031 + chr3L_7_23180001 chr3L_23180001 RAL-28 744 chr3L 24168787 24168821 chr3L 24176114 24176149 ZAM 13 7322 3.5 2.5 3.0 3.2 7362 chr3L 24168787 intron Snap25 + chr3L 24172468 intron Snap25 + chr3L 24176149 intron Snap25 + chr3L_13_24170001 chr3L_24170001 RAL-28 745 chr3R 2534140 2534160 chr3R 2541708 2541729 6 7565 8.0 6.5 7.2 0.7 7589 chr3R 2534140 intergenic not near genes chr3R 2537934 intergenic not near genes chr3R 2541729 intergenic not near genes chr3R_6_2535001 chr3R_2535001 RAL-28 746 chr3R 4063809 4063830 chr3R 4069089 4069109 4 5279 1.0 6.0 3.5 0.9 5300 chr3R 4063809 intergenic not near genes chr3R 4066459 intergenic not near genes chr3R 4069109 intergenic not near genes chr3R_4_4065001 chr3R_4065001 RAL-28 747 chr3R 4206077 4206104 chr3R 4211652 4211671 mdg3 8 5573 2.0 1.0 1.5 3.2 5594 chr3R 4206077 intron CG14636 - chr3R 4208874 intron CG14636 - chr3R 4211671 intron CG14636 - chr3R_8_4205001 chr3R_4205001 RAL-28 748 chr3R 4366765 4366787 chr3R 4375148 4375168 roo 6 8382 2.0 0.5 1.2 2.7 8403 chr3R 4366765 3` UTR CG1090 + chr3R 4370966 intergenic not near genes chr3R 4375168 5` UTR CR44922 + chr3R_6_4370001 chr3R_4370001 RAL-28 749 chr3R 4408408 4408432 chr3R 4412712 4412736 Juan 4 4303 1.0 0.5 0.8 2.2 4328 chr3R 4408408 intron CG32944 - chr3R 4410572 intron CG32944 - chr3R 4412736 intron CG32944 - chr3R_4_4410001 chr3R_4410001 RAL-28 750 chr3R 4769159 4769190 chr3R 4769237 4769266 6 77 1.5 1.5 1.5 2.4 107 chr3R 4769159 intron,intron atms +,CG44098 - chr3R 4769212 intron,intron atms +,CG44098 - chr3R 4769266 intron,intron atms +,CG44098 - chr3R_6_4765001 chr3R_4765001 RAL-28 751 chr3R 4861566 4861598 chr3R 4861647 4861669 7 76 2.0 2.0 2.0 2.3 103 chr3R 4861566 intron opa + chr3R 4861618 intron opa + chr3R 4861669 intron opa + chr3R_7_4860001 chr3R_4860001 RAL-28 752 chr3R 4966011 4966034 chr3R 4966103 4966126 4 91 0.5 1.0 0.8 2.2 115 chr3R 4966011 intron CG1124 + chr3R 4966068 intron CG1124 + chr3R 4966126 intron CG1124 + chr3R_4_4965001 chr3R_4965001 RAL-28 753 chr3R 5045845 5045874 chr3R 5052947 5052976 HMS-Beagle 5 7102 3.5 1.5 2.5 1.4 7131 chr3R 5045845 intron CR43635 - chr3R 5049410 intergenic not near genes chr3R 5052976 intergenic CR45588 - chr3R_5_5045001 chr3R_5045001 RAL-28 754 chr3R 5170268 5170301 chr3R 5170369 5170402 7 100 2.0 1.0 1.5 2.8 134 chr3R 5170268 intergenic dpr16 + chr3R 5170335 intergenic dpr16 + chr3R 5170402 intergenic dpr16 + chr3R_7_5170001 chr3R_5170001 RAL-28 755 chr3R 5193900 5193932 chr3R 5194017 5194049 6 115 2.5 2.5 2.5 1.7 149 chr3R 5193900 intron cno - chr3R 5193974 intron cno - chr3R 5194049 intron cno - chr3R_6_5190001 chr3R_5190001 RAL-28 756 chr3R 5338397 5338428 chr3R 5343574 5343605 Rt1c 7 5177 1.5 6.0 3.8 1.5 5208 chr3R 5338397 intron mtd - chr3R 5341001 intron mtd - chr3R 5343605 intron mtd - chr3R_7_5340001 chr3R_5340001 RAL-28 757 chr3R 5385972 5386001 chr3R 5386143 5386172 9 171 2.5 3.5 3.0 2.2 200 chr3R 5385972 intron kkv - chr3R 5386072 intron kkv - chr3R 5386172 intron kkv - chr3R_9_5385001 chr3R_5385001 RAL-28 758 chr3R 5627159 5627176 chr3R 5627569 5627578 4 408 1.5 2.5 2.0 1.3 419 chr3R 5627159 intergenic not near genes chr3R 5627368 intergenic CG31551 + chr3R 5627578 intergenic CG31551 + chr3R_4_5625001 chr3R_5625001 RAL-28 759 chr3R 5746015 5746045 chr3R 5746256 5746286 pogo 5 240 1.0 2.5 1.8 1.8 271 chr3R 5746015 3` UTR Madm + chr3R 5746150 3` UTR Madm + chr3R 5746286 3` UTR Madm + chr3R_5_5745001 chr3R_5745001 RAL-28 760 chr3R 5772389 5772399 chr3R 5772547 5772557 4 158 2.5 2.0 2.2 1.2 168 chr3R 5772389 intron CG2082 - chr3R 5772473 intron CG2082 - chr3R 5772557 intron CG2082 - chr3R_4_5770001 chr3R_5770001 RAL-28 761 chr3R 5809122 5809138 chr3R 5809363 5809379 pogo 6 240 1.5 5.0 3.2 1.4 257 chr3R 5809122 3` UTR CG11000 + chr3R 5809250 3` UTR CG11000 + chr3R 5809379 3` UTR CG11000 + chr3R_6_5805001 chr3R_5805001 RAL-28 762 chr3R 5822380 5822412 chr3R 5823547 5823579 1360 8 1167 1.5 1.0 1.2 3.6 1199 chr3R 5822380 3` UTR CG2023 - chr3R 5822980 3` UTR CG2023 - chr3R 5823579 3` UTR CG2023 - chr3R_8_5820001 chr3R_5820001 RAL-28 763 chr3R 5927564 5927584 chr3R 5927804 5927823 pogo 7 239 2.0 1.5 1.8 2.5 259 chr3R 5927564 intron CG34113 - chr3R 5927694 intron CG34113 - chr3R 5927823 intron CG34113 - chr3R_7_5925001 chr3R_5925001 RAL-28 764 chr3R 5989344 5989369 chr3R 5989416 5989443 8 80 0.5 3.5 2.0 2.7 99 chr3R 5989344 5` UTR CR44927 + chr3R 5989394 5` UTR CR44927 + chr3R 5989443 5` UTR CR44927 + chr3R_8_5985001 chr3R_5985001 RAL-28 765 chr3R 6015960 6015991 chr3R 6024441 6024451 Tirant 7 8476 3.0 3.0 3.0 1.8 8491 chr3R 6015960 intergenic not near genes chr3R 6020206 intergenic not near genes chr3R 6024451 intergenic not near genes chr3R_7_6020001 chr3R_6020001 RAL-28 766 chr3R 6158515 6158527 chr3R 6167092 6167110 Tirant 4 8580 6.0 3.0 4.5 0.7 8595 chr3R 6158515 intergenic not near genes chr3R 6162812 intergenic not near genes chr3R 6167110 intergenic CG1077 + chr3R_4_6160001 chr3R_6160001 RAL-28 767 chr3R 6175175 6175207 chr3R 6182447 6182464 HMS-Beagle2 7 7264 1.0 0.5 0.8 3.9 7289 chr3R 6175175 intergenic Osi1 + chr3R 6178820 intron CR45194 + chr3R 6182464 intergenic CR45194 + chr3R_7_6175001 chr3R_6175001 RAL-28 768 chr3R 6690680 6690714 chr3R 6690765 6690799 8 85 0.0 0.5 0.2 6.7 119 chr3R 6690680 intergenic Ccp84Ae -,Ccp84Af - chr3R 6690740 intergenic Ccp84Ae - chr3R 6690799 intergenic Ccp84Ae - chr3R_8_6690001 chr3R_6690001 RAL-28 769 chr3R 6737500 6737525 chr3R 6739286 6739310 Doc 9 1786 3.0 2.5 2.8 2.4 1810 chr3R 6737500 intron pb - chr3R 6738405 intron pb - chr3R 6739310 intron pb - chr3R_9_6735001 chr3R_6735001 RAL-28 770 chr3R 6918061 6918085 chr3R 6918139 6918163 4 78 1.5 1.0 1.2 1.8 102 chr3R 6918061 intron Antp - chr3R 6918112 intron Antp - chr3R 6918163 intron Antp - chr3R_4_6915001 chr3R_6915001 RAL-28 771 chr3R 6961179 6961201 chr3R 6961257 6961280 6 77 4.0 1.5 2.8 1.6 101 chr3R 6961179 intron Antp - chr3R 6961230 intron Antp - chr3R 6961280 intron Antp - chr3R_6_6960001 chr3R_6960001 RAL-28 772 chr3R 7026879 7026881 chr3R 7026946 7026966 4 79 0.5 2.5 1.5 1.6 87 chr3R 7026879 intergenic not near genes chr3R 7026922 intergenic not near genes chr3R 7026966 intergenic not near genes chr3R_4_7025001 chr3R_7025001 RAL-28 773 chr3R 7103288 7103307 chr3R 7103363 7103366 4 71 2.0 3.5 2.8 1.1 78 chr3R 7103288 intron Alh - chr3R 7103327 intron Alh - chr3R 7103366 intron Alh - chr3R_4_7100001 chr3R_7100001 RAL-28 774 chr3R 7447992 7448008 chr3R 7448070 7448086 4 78 1.0 1.0 1.0 2.0 94 chr3R 7447992 intergenic not near genes chr3R 7448039 intergenic not near genes chr3R 7448086 intergenic not near genes chr3R_4_7445001 chr3R_7445001 RAL-28 775 chr3R 7589794 7589809 chr3R 7589914 7589924 4 118 2.5 2.0 2.2 1.2 130 chr3R 7589794 intron CG34127 - chr3R 7589859 intron CG34127 - chr3R 7589924 intron CG34127 - chr3R_4_7585001 chr3R_7585001 RAL-28 776 chr3R 7655027 7655040 chr3R 7655109 7655122 6 82 1.5 0.5 1.0 3.0 95 chr3R 7655027 intergenic not near genes chr3R 7655074 intergenic not near genes chr3R 7655122 intergenic not near genes chr3R_6_7655001 chr3R_7655001 RAL-28 777 chr3R 7694585 7694609 chr3R 7713644 7713665 invader3 5 19059 0.5 1.5 1.0 2.5 19080 chr3R 7694585 3` UTR Nlg1 + chr3R 7704125 intergenic not near genes chr3R 7713665 intergenic not near genes chr3R_5_7700001 chr3R_7700001 RAL-28 778 chr3R 7724447 7724477 chr3R 7724537 7724567 6 88 1.5 4.0 2.8 1.6 120 chr3R 7724447 3` UTR CG2616 + chr3R 7724507 3` UTR CG2616 + chr3R 7724567 3` UTR CG2616 + chr3R_6_7720001 chr3R_7720001 RAL-28 779 chr3R 7821718 7821743 chr3R 7821814 7821839 10 96 1.5 2.0 1.8 3.6 121 chr3R 7821718 intron CG34384 + chr3R 7821778 intron CG34384 + chr3R 7821839 intron CG34384 + chr3R_10_7820001 chr3R_7820001 RAL-28 780 chr3R 7830305 7830330 chr3R 7830456 7830481 7 149 1.5 1.5 1.5 2.8 176 chr3R 7830305 intron CG34384 + chr3R 7830393 intron CG34384 + chr3R 7830481 intron CG34384 + chr3R_7_7830001 chr3R_7830001 RAL-28 781 chr3R 7951472 7951494 chr3R 7951569 7951591 6 98 1.0 1.5 1.2 2.7 119 chr3R 7951472 intron dsx - chr3R 7951532 intron dsx - chr3R 7951591 intron dsx - chr3R_6_7950001 chr3R_7950001 RAL-28 782 chr3R 7973315 7973343 chr3R 7974377 7974405 1360 4 1062 1.0 1.5 1.2 1.8 1090 chr3R 7973315 intergenic not near genes chr3R 7973860 intergenic not near genes chr3R 7974405 intergenic CD98hc - chr3R_4_7970001 chr3R_7970001 RAL-28 783 chr3R 8339246 8339247 chr3R 21907534 21907536 13 13568289 10.5 13.0 11.8 1.0 13568290 chr3R 8339246 intergenic not near genes chr3R 15123391 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_13_15120001 chr3R_15120001 RAL-28 784 chr3R 8403007 8403039 chr3R 8412173 8412205 roo 8 9164 1.5 5.0 3.2 1.9 9198 chr3R 8403007 intron CG45263 - chr3R 8407606 intron CG45263 - chr3R 8412205 intron CG45263 - chr3R_8_8405001 chr3R_8405001 RAL-28 785 chr3R 8412771 8412799 chr3R 8412856 8412884 5 85 2.5 2.0 2.2 1.6 113 chr3R 8412771 intron CG45263 - chr3R 8412828 intron CG45263 - chr3R 8412884 intron CG45263 - chr3R_5_8410001 chr3R_8410001 RAL-28 786 chr3R 8526524 8526544 chr3R 8526588 8526621 5 74 1.5 2.5 2.0 1.7 97 chr3R 8526524 3` UTR CG31259 + chr3R 8526572 3` UTR CG31259 + chr3R 8526621 3` UTR CG31259 + chr3R_5_8525001 chr3R_8525001 RAL-28 787 chr3R 8537825 8537848 chr3R 8537908 8537931 7 83 3.0 4.0 3.5 1.6 106 chr3R 8537825 intergenic not near genes chr3R 8537878 intergenic not near genes chr3R 8537931 intergenic not near genes chr3R_7_8535001 chr3R_8535001 RAL-28 788 chr3R 8570479 8570507 chr3R 8575114 8575124 HMS-Beagle 6 4632 1.5 2.0 1.8 2.1 4645 chr3R 8570479 intergenic not near genes chr3R 8572802 intergenic not near genes chr3R 8575124 intergenic not near genes chr3R_6_8570001 chr3R_8570001 RAL-28 789 chr3R 8576174 8576184 chr3R 8576345 8576355 4 170 5.0 3.0 4.0 0.8 181 chr3R 8576174 intergenic not near genes chr3R 8576264 intergenic not near genes chr3R 8576355 intergenic not near genes chr3R_4_8575001 chr3R_8575001 RAL-28 790 chr3R 8601773 8601786 chr3R 8610926 8610935 roo 5 9152 3.0 2.5 2.8 1.3 9162 chr3R 8601773 intron 5-HT2B + chr3R 8606354 intron 5-HT2B + chr3R 8610935 intron 5-HT2B + chr3R_5_8605001 chr3R_8605001 RAL-28 791 chr3R 8614798 8614814 chr3R 8615001 8615017 9 203 0.0 2.5 1.2 4.1 219 chr3R 8614798 intron 5-HT2B + chr3R 8614908 intron 5-HT2B + chr3R 8615017 intron 5-HT2B + chr3R_9_8610001 chr3R_8610001 RAL-28 792 chr3R 8621541 8621555 chr3R 8621618 8621631 5 77 4.0 1.0 2.5 1.4 90 chr3R 8621541 intron 5-HT2B + chr3R 8621586 intron 5-HT2B + chr3R 8621631 intron 5-HT2B + chr3R_5_8620001 chr3R_8620001 RAL-28 793 chr3R 8707361 8707384 chr3R 8709802 8709825 jockey 4 2441 2.0 4.0 3.0 1.0 2464 chr3R 8707361 intergenic not near genes chr3R 8708593 intergenic not near genes chr3R 8709825 intergenic not near genes chr3R_4_8705001 chr3R_8705001 RAL-28 794 chr3R 8798651 8798681 chr3R 8798733 8798764 4 82 1.5 1.0 1.2 1.8 113 chr3R 8798651 intron,intron Pif1A -,Pif1B - chr3R 8798708 intron,intron Pif1A -,Pif1B - chr3R 8798764 intron,intron Pif1A -,Pif1B - chr3R_4_8795001 chr3R_8795001 RAL-28 795 chr3R 8811230 8811257 chr3R 8811321 8811348 4 90 0.5 1.0 0.8 2.2 118 chr3R 8811230 intron CG9837 - chr3R 8811289 intron CG9837 - chr3R 8811348 intron CG9837 - chr3R_4_8810001 chr3R_8810001 RAL-28 796 chr3R 8917894 8917908 chr3R 8917973 8917988 5 80 1.5 2.5 2.0 1.7 94 chr3R 8917894 intron pyd - chr3R 8917941 intron pyd - chr3R 8917988 intron pyd - chr3R_5_8915001 chr3R_8915001 RAL-28 797 chr3R 9101839 9101872 chr3R 9101937 9101970 9 96 0.5 2.0 1.2 4.1 131 chr3R 9101839 intron pum - chr3R 9101904 intron pum - chr3R 9101970 intron pum - chr3R_9_9100001 chr3R_9100001 RAL-28 798 chr3R 9141169 9141176 chr3R 9141252 9141265 4 87 5.0 2.0 3.5 0.9 96 chr3R 9141169 intron pum - chr3R 9141217 intron pum - chr3R 9141265 intron pum - chr3R_4_9140001 chr3R_9140001 RAL-28 799 chr3R 9278792 9278808 chr3R 9284043 9284068 Rt1a 4 5257 3.0 5.5 4.2 0.8 5276 chr3R 9278792 intergenic not near genes chr3R 9281430 intergenic not near genes chr3R 9284068 intergenic not near genes chr3R_4_9280001 chr3R_9280001 RAL-28 800 chr3R 9319576 9319609 chr3R 9320011 9320038 jockey 8 434 1.0 3.0 2.0 2.7 462 chr3R 9319576 intron CG8861 - chr3R 9319807 intron CG8861 - chr3R 9320038 intron CG8861 - chr3R_8_9315001 chr3R_9315001 RAL-28 801 chr3R 9327427 9327452 chr3R 9334274 9334299 8 6848 5.5 12.5 9.0 0.8 6872 chr3R 9327427 intron CG8861 - chr3R 9330863 intergenic CG16749 - chr3R 9334299 exon CG8866 - chr3R_8_9330001 chr3R_9330001 RAL-28 802 chr3R 9347854 9347877 chr3R 9347927 9347959 10 80 3.5 2.5 3.0 2.5 105 chr3R 9347854 intron CG45050 + chr3R 9347906 intron CG45050 + chr3R 9347959 intron CG45050 + chr3R_10_9345001 chr3R_9345001 RAL-28 803 chr3R 9440337 9440359 chr3R 9440422 9440445 11 83 3.5 4.0 3.8 2.3 108 chr3R 9440337 intron ps + chr3R 9440391 intron ps + chr3R 9440445 intron ps + chr3R_11_9440001 chr3R_9440001 RAL-28 804 chr3R 9449622 9449630 chr3R 9449716 9449725 4 94 0.5 3.0 1.8 1.4 103 chr3R 9449622 3` UTR ps + chr3R 9449674 3` UTR ps + chr3R 9449725 3` UTR ps + chr3R_4_9445001 chr3R_9445001 RAL-28 805 chr3R 9453543 9453559 chr3R 9453620 9453636 7 77 3.0 2.0 2.5 2.0 93 chr3R 9453543 3` UTR ps + chr3R 9453590 3` UTR ps + chr3R 9453636 3` UTR ps + chr3R_7_9450001 chr3R_9450001 RAL-28 806 chr3R 9836878 9836900 chr3R 9836956 9836988 6 86 2.0 4.5 3.2 1.4 110 chr3R 9836878 intron Teh1 - chr3R 9836933 intron Teh1 - chr3R 9836988 intron Teh1 - chr3R_6_9835001 chr3R_9835001 RAL-28 807 chr3R 10073769 10073802 chr3R 10073878 10073910 6 109 1.5 0.5 1.0 3.0 141 chr3R 10073769 intergenic nerfin-2 +,CG5361 - chr3R 10073840 3` UTR CG5361 - chr3R 10073910 exon CG5361 - chr3R_6_10070001 chr3R_10070001 RAL-28 808 chr3R 10158492 10158506 chr3R 10158574 10158588 4 82 3.0 1.0 2.0 1.3 96 chr3R 10158492 3` UTR Invadolysin + chr3R 10158540 3` UTR Invadolysin + chr3R 10158588 3` UTR Invadolysin + chr3R_4_10155001 chr3R_10155001 RAL-28 809 chr3R 10275567 10275581 chr3R 10275644 10275658 4 77 2.5 1.5 2.0 1.3 91 chr3R 10275567 intron CG43143 + chr3R 10275612 intron CG43143 + chr3R 10275658 intron CG43143 + chr3R_4_10275001 chr3R_10275001 RAL-28 810 chr3R 10531869 10531894 chr3R 10531950 10531975 5 80 2.0 0.0 1.0 2.5 106 chr3R 10531869 intron hth - chr3R 10531922 intron hth - chr3R 10531975 intron hth - chr3R_5_10530001 chr3R_10530001 RAL-28 811 chr3R 10653755 10653787 chr3R 10653833 10653865 5 74 1.5 3.0 2.2 1.6 110 chr3R 10653755 intergenic not near genes chr3R 10653810 intergenic not near genes chr3R 10653865 intergenic not near genes chr3R_5_10650001 chr3R_10650001 RAL-28 812 chr3R 10723766 10723785 chr3R 10723858 10723875 5 91 2.5 0.5 1.5 2.0 109 chr3R 10723766 intergenic not near genes chr3R 10723820 intergenic not near genes chr3R 10723875 intergenic not near genes chr3R_5_10720001 chr3R_10720001 RAL-28 813 chr3R 10727642 10727668 chr3R 10727722 10727747 9 79 4.5 1.0 2.8 2.4 105 chr3R 10727642 intergenic not near genes chr3R 10727694 intergenic not near genes chr3R 10727747 intergenic not near genes chr3R_9_10725001 chr3R_10725001 RAL-28 814 chr3R 10745426 10745455 chr3R 10745513 10745542 9 87 2.5 3.0 2.8 2.4 116 chr3R 10745426 intron TkR86C - chr3R 10745484 intron TkR86C - chr3R 10745542 intron TkR86C - chr3R_9_10745001 chr3R_10745001 RAL-28 815 chr3R 11024182 11024214 chr3R 11024273 11024307 6 92 1.0 2.0 1.5 2.4 125 chr3R 11024182 intron CG34114 + chr3R 11024244 intron CG34114 + chr3R 11024307 intron CG34114 + chr3R_6_11020001 chr3R_11020001 RAL-28 816 chr3R 11085462 11085489 chr3R 11085539 11085566 4 77 0.0 0.5 0.2 3.3 104 chr3R 11085462 3` UTR CR44940 - chr3R 11085514 intergenic CR44940 - chr3R 11085566 intergenic CR44940 - chr3R_4_11085001 chr3R_11085001 RAL-28 817 chr3R 11102326 11102355 chr3R 11102404 11102436 7 80 2.0 1.5 1.8 2.5 110 chr3R 11102326 intergenic not near genes chr3R 11102381 intergenic not near genes chr3R 11102436 intergenic not near genes chr3R_7_11100001 chr3R_11100001 RAL-28 818 chr3R 11192285 11192307 chr3R 11192929 11192954 4 644 3.5 1.0 2.2 1.2 669 chr3R 11192285 intergenic not near genes chr3R 11192620 intergenic not near genes chr3R 11192954 intergenic not near genes chr3R_4_11190001 chr3R_11190001 RAL-28 819 chr3R 11313243 11313255 chr3R 11313332 11313344 4 89 1.0 1.5 1.2 1.8 101 chr3R 11313243 intergenic not near genes chr3R 11313294 intergenic not near genes chr3R 11313344 intergenic not near genes chr3R_4_11310001 chr3R_11310001 RAL-28 820 chr3R 11342541 11342573 chr3R 11342616 11342649 8 75 0.5 1.0 0.8 4.4 108 chr3R 11342541 intron pros + chr3R 11342595 intron pros + chr3R 11342649 intron pros + chr3R_8_11340001 chr3R_11340001 RAL-28 821 chr3R 11452082 11452095 chr3R 11452168 11452182 6 87 1.5 2.0 1.8 2.1 100 chr3R 11452082 intron CG17230 + chr3R 11452132 intron CG17230 + chr3R 11452182 intron CG17230 + chr3R_6_11450001 chr3R_11450001 RAL-28 822 chr3R 11455579 11455612 chr3R 11455705 11455737 4 126 0.5 2.0 1.2 1.8 158 chr3R 11455579 intron,intron CG17230 +,PGRP-LB - chr3R 11455658 intron,intron CG17230 +,PGRP-LB - chr3R 11455737 intron,intron CG17230 +,PGRP-LB - chr3R_4_11455001 chr3R_11455001 RAL-28 823 chr3R 11483454 11483483 chr3R 11483538 11483559 4 78 0.0 2.0 1.0 2.0 105 chr3R 11483454 intergenic not near genes chr3R 11483506 intergenic not near genes chr3R 11483559 intergenic not near genes chr3R_4_11480001 chr3R_11480001 RAL-28 824 chr3R 11664791 11664822 chr3R 11664883 11664914 8 92 1.5 3.5 2.5 2.3 123 chr3R 11664791 intron CG42327 + chr3R 11664852 intron CG42327 + chr3R 11664914 intron CG42327 + chr3R_8_11660001 chr3R_11660001 RAL-28 825 chr3R 11694737 11694754 chr3R 11694829 11694846 4 92 0.5 2.0 1.2 1.8 109 chr3R 11694737 intergenic Fer3 - chr3R 11694792 intergenic Fer3 - chr3R 11694846 intergenic not near genes chr3R_4_11690001 chr3R_11690001 RAL-28 826 chr3R 11713496 11713526 chr3R 11713576 11713606 6 79 4.0 3.5 3.8 1.2 110 chr3R 11713496 intergenic not near genes chr3R 11713551 intergenic not near genes chr3R 11713606 intergenic not near genes chr3R_6_11710001 chr3R_11710001 RAL-28 827 chr3R 11811091 11811125 chr3R 11811187 11811221 8 95 1.5 2.0 1.8 2.9 130 chr3R 11811091 5` UTR ClC-a - chr3R 11811156 intron ClC-a - chr3R 11811221 intron ClC-a - chr3R_8_11810001 chr3R_11810001 RAL-28 828 chr3R 11919306 11919336 chr3R 11919394 11919424 4 83 1.5 1.5 1.5 1.6 118 chr3R 11919306 intron Cad87A - chr3R 11919365 intron Cad87A - chr3R 11919424 intron Cad87A - chr3R_4_11915001 chr3R_11915001 RAL-28 829 chr3R 11994998 11995021 chr3R 11995078 11995083 5 74 0.0 0.0 0.0 5.0 85 chr3R 11994998 exon Tk - chr3R 11995040 exon Tk - chr3R 11995083 exon Tk - chr3R_5_11995001 chr3R_11995001 RAL-28 830 chr3R 12111901 12111922 chr3R 12111977 12111999 6 75 0.0 4.0 2.0 2.0 98 chr3R 12111901 intergenic dpr17 + chr3R 12111950 intergenic not near genes chr3R 12111999 intergenic not near genes chr3R_6_12110001 chr3R_12110001 RAL-28 831 chr3R 12154029 12154035 chr3R 12154456 12154488 5 434 8.0 12.0 10.0 0.5 459 chr3R 12154029 intron dpr15 - chr3R 12154258 intron dpr15 - chr3R 12154488 intron dpr15 - chr3R_5_12150001 chr3R_12150001 RAL-28 832 chr3R 12183176 12183203 chr3R 12183262 12183289 7 85 1.5 2.0 1.8 2.5 113 chr3R 12183176 intergenic not near genes chr3R 12183232 intergenic not near genes chr3R 12183289 intergenic not near genes chr3R_7_12180001 chr3R_12180001 RAL-28 833 chr3R 12267860 12267886 chr3R 12267940 12267966 9 79 1.0 0.0 0.5 6.0 106 chr3R 12267860 intron svp + chr3R 12267913 intron svp + chr3R 12267966 intron svp + chr3R_9_12265001 chr3R_12265001 RAL-28 834 chr3R 12344131 12344156 chr3R 12344208 12344233 5 77 1.0 3.0 2.0 1.7 102 chr3R 12344131 intergenic not near genes chr3R 12344182 intergenic not near genes chr3R 12344233 intergenic not near genes chr3R_5_12340001 chr3R_12340001 RAL-28 835 chr3R 12599008 12599020 chr3R 12599147 12599159 4 140 3.5 3.0 3.2 1.0 151 chr3R 12599008 intergenic not near genes chr3R 12599084 intergenic not near genes chr3R 12599159 intergenic not near genes chr3R_4_12595001 chr3R_12595001 RAL-28 836 chr3R 12725966 12725970 chr3R 12726050 12726062 4 90 0.0 1.0 0.5 2.7 96 chr3R 12725966 intergenic not near genes chr3R 12726014 intergenic not near genes chr3R 12726062 intergenic not near genes chr3R_4_12725001 chr3R_12725001 RAL-28 837 chr3R 12733483 12733495 chr3R 12733560 12733568 5 76 7.0 3.0 5.0 0.8 85 chr3R 12733483 intergenic not near genes chr3R 12733526 intergenic not near genes chr3R 12733568 intergenic not near genes chr3R_5_12730001 chr3R_12730001 RAL-28 838 chr3R 12819037 12819051 chr3R 12819120 12819134 4 83 1.5 3.5 2.5 1.1 97 chr3R 12819037 intergenic not near genes chr3R 12819086 intergenic not near genes chr3R 12819134 intergenic not near genes chr3R_4_12815001 chr3R_12815001 RAL-28 839 chr3R 12866492 12866519 chr3R 12866643 12866670 4 151 1.5 2.0 1.8 1.4 178 chr3R 12866492 intergenic not near genes chr3R 12866581 intergenic not near genes chr3R 12866670 intergenic not near genes chr3R_4_12865001 chr3R_12865001 RAL-28 840 chr3R 13045790 13045794 chr3R 13053026 13053037 6 7237 21.0 23.5 22.2 0.3 7247 chr3R 13045790 exon Hsc70-2 + chr3R 13049414 3` UTR CG7966 - chr3R 13053037 intron pic + chr3R_6_13045001 chr3R_13045001 RAL-28 841 chr3R 13067007 13067135 chr3R 13067094 13067210 9 78 1.5 0.0 0.8 5.0 203 chr3R 13067007 intron sim + chr3R 13067108 intron sim + chr3R 13067210 intron sim + chr3R_9_13065001 chr3R_13065001 RAL-28 842 chr3R 13120775 13120799 chr3R 13120849 13120869 5 72 2.0 2.0 2.0 1.7 94 chr3R 13120775 intron timeout + chr3R 13120822 intron timeout + chr3R 13120869 intron timeout + chr3R_5_13120001 chr3R_13120001 RAL-28 843 chr3R 13143053 13143065 chr3R 13148615 13148620 mdg3 5 5569 1.0 6.5 3.8 1.0 5567 chr3R 13143053 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13145836 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13148620 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_5_13145001 chr3R_13145001 RAL-28 844 chr3R 13195951 13195979 chr3R 13196046 13196074 7 95 3.5 1.0 2.2 2.2 123 chr3R 13195951 intergenic not near genes chr3R 13196012 intergenic not near genes chr3R 13196074 intergenic not near genes chr3R_7_13195001 chr3R_13195001 RAL-28 845 chr3R 13391632 13391670 chr3R 13391710 13391747 11 78 1.0 1.0 1.0 5.5 115 chr3R 13391632 intron CCHa2 - chr3R 13391690 intron CCHa2 - chr3R 13391747 intron CCHa2 - chr3R_11_13390001 chr3R_13390001 RAL-28 846 chr3R 13394672 13394705 chr3R 13395020 13395054 11 346 2.0 3.5 2.8 2.9 382 chr3R 13394672 intron CCHa2 - chr3R 13394863 intron CCHa2 - chr3R 13395054 intron CCHa2 - chr3R_11_13390001 chr3R_13390001 RAL-28 847 chr3R 13672946 13672975 chr3R 13673024 13673053 7 78 2.5 1.0 1.8 2.5 107 chr3R 13672946 intron Task6 - chr3R 13673000 intron Task6 - chr3R 13673053 intron Task6 - chr3R_7_13670001 chr3R_13670001 RAL-28 848 chr3R 13693028 13693028 chr3R 21907534 21907535 8 8214507 8.0 13.0 10.5 0.7 8214507 chr3R 13693028 3` UTR flfl + chr3R 17800282 exon CG17803 - chr3R 21907535 intergenic CG6678 + chr3R_8_17800001 chr3R_17800001 RAL-28 849 chr3R 13763306 13763327 chr3R 13763385 13763404 6 78 2.0 0.0 1.0 3.0 98 chr3R 13763306 3` UTR CG34383 + chr3R 13763355 3` UTR CG34383 + chr3R 13763404 3` UTR CG34383 + chr3R_6_13760001 chr3R_13760001 RAL-28 850 chr3R 13789535 13789558 chr3R 13789615 13789636 10 77 0.0 3.5 1.8 3.6 101 chr3R 13789535 intergenic not near genes chr3R 13789586 intergenic not near genes chr3R 13789636 intergenic not near genes chr3R_10_13785001 chr3R_13785001 RAL-28 851 chr3R 13835610 13835624 chr3R 13835701 13835715 7 91 0.0 2.0 1.0 3.5 105 chr3R 13835610 intron Nsf2 - chr3R 13835662 intron Nsf2 - chr3R 13835715 intron Nsf2 - chr3R_7_13835001 chr3R_13835001 RAL-28 852 chr3R 13846184 13846203 chr3R 13846272 13846298 8 95 3.5 1.5 2.5 2.3 114 chr3R 13846184 intergenic not near genes chr3R 13846241 intergenic not near genes chr3R 13846298 intergenic not near genes chr3R_8_13845001 chr3R_13845001 RAL-28 853 chr3R 13863680 13863716 chr3R 13863766 13863803 9 86 0.5 1.5 1.0 4.5 123 chr3R 13863680 intergenic not near genes chr3R 13863742 intergenic not near genes chr3R 13863803 intergenic not near genes chr3R_9_13860001 chr3R_13860001 RAL-28 854 chr3R 14246406 14246415 chr3R 14247902 14247909 jockey 4 1494 2.0 3.5 2.8 1.1 1503 chr3R 14246406 intergenic not near genes chr3R 14247158 intergenic not near genes chr3R 14247909 intergenic not near genes chr3R_4_14245001 chr3R_14245001 RAL-28 855 chr3R 14403214 14403241 chr3R 14403298 14403325 5 84 1.0 5.0 3.0 1.2 111 chr3R 14403214 intron cv-c - chr3R 14403270 intron cv-c - chr3R 14403325 intron cv-c - chr3R_5_14400001 chr3R_14400001 RAL-28 856 chr3R 14424572 14424598 chr3R 14424677 14424703 12 104 2.0 2.5 2.2 3.8 131 chr3R 14424572 intron cv-c - chr3R 14424638 intron cv-c - chr3R 14424703 intron cv-c - chr3R_12_14420001 chr3R_14420001 RAL-28 857 chr3R 14833479 14833495 chr3R 14834285 14834301 5 804 4.0 1.5 2.8 1.3 822 chr3R 14833479 intron btsz - chr3R 14833890 intron btsz - chr3R 14834301 intron btsz - chr3R_5_14830001 chr3R_14830001 RAL-28 858 chr3R 14923728 14923747 chr3R 14923804 14923817 4 74 2.5 8.0 5.2 0.6 89 chr3R 14923728 3` UTR CR45598 - chr3R 14923772 intergenic CR45598 - chr3R 14923817 intergenic CR45598 - chr3R_4_14920001 chr3R_14920001 RAL-28 859 chr3R 14978198 14978218 chr3R 14978313 14978346 9 123 2.0 3.0 2.5 2.6 148 chr3R 14978198 intergenic not near genes chr3R 14978272 intergenic not near genes chr3R 14978346 intergenic not near genes chr3R_9_14975001 chr3R_14975001 RAL-28 860 chr3R 15088072 15088101 chr3R 15088170 15088199 5 97 2.0 0.0 1.0 2.5 127 chr3R 15088072 intron CG6966 - chr3R 15088136 intron CG6966 - chr3R 15088199 intron CG6966 - chr3R_5_15085001 chr3R_15085001 RAL-28 861 chr3R 15132062 15132076 chr3R 15135121 15135136 Juan 6 3060 5.5 6.5 6.0 0.9 3074 chr3R 15132062 intergenic CG42788 - chr3R 15133599 intergenic not near genes chr3R 15135136 intergenic CG6912 - chr3R_6_15130001 chr3R_15130001 RAL-28 862 chr3R 15278829 15278855 chr3R 15278916 15278941 5 86 1.5 2.0 1.8 1.8 112 chr3R 15278829 intergenic l(3)neo43 - chr3R 15278885 intergenic l(3)neo43 - chr3R 15278941 intergenic l(3)neo43 - chr3R_5_15275001 chr3R_15275001 RAL-28 863 chr3R 15286987 15286988 chr3R 21907535 21907536 5 6620548 9.5 13.0 11.2 0.4 6620549 chr3R 15286987 intron Tm1 + chr3R 18597262 intron,exon qin +,CG14304 - chr3R 21907536 intergenic CG6678 + chr3R_5_18595001 chr3R_18595001 RAL-28 864 chr3R 15401273 15401285 chr3R 15406176 15406198 4 4906 11.0 7.0 9.0 0.4 4925 chr3R 15401273 3` UTR Rbp + chr3R 15403736 exon CG6125 - chr3R 15406198 intron CG6125 - chr3R_4_15400001 chr3R_15400001 RAL-28 865 chr3R 15416252 15416284 chr3R 15416332 15416332 4 72 1.5 1.5 1.5 1.6 80 chr3R 15416252 3` UTR Atx2 + chr3R 15416292 3` UTR Atx2 + chr3R 15416332 3` UTR Atx2 + chr3R_4_15415001 chr3R_15415001 RAL-28 866 chr3R 15521965 15521984 chr3R 15522055 15522075 5 90 1.5 2.5 2.0 1.7 110 chr3R 15521965 intergenic not near genes chr3R 15522020 intergenic not near genes chr3R 15522075 intergenic not near genes chr3R_5_15520001 chr3R_15520001 RAL-28 867 chr3R 15601163 15601194 chr3R 15608685 15608715 412 6 7521 5.5 2.0 3.8 1.2 7552 chr3R 15601163 intergenic not near genes chr3R 15604939 intergenic not near genes chr3R 15608715 intergenic not near genes chr3R_6_15600001 chr3R_15600001 RAL-28 868 chr3R 15725588 15725596 chr3R 15725828 15725865 5 263 1.0 2.5 1.8 1.8 277 chr3R 15725588 intergenic not near genes chr3R 15725726 intergenic not near genes chr3R 15725865 intergenic not near genes chr3R_5_15725001 chr3R_15725001 RAL-28 869 chr3R 15783741 15783754 chr3R 15784021 15784034 4 280 2.0 1.0 1.5 1.6 293 chr3R 15783741 intergenic not near genes chr3R 15783888 intergenic not near genes chr3R 15784034 intergenic not near genes chr3R_4_15780001 chr3R_15780001 RAL-28 870 chr3R 16085811 16085836 chr3R 16086302 16086320 7 490 2.0 4.0 3.0 1.8 509 chr3R 16085811 intron,intron Mhcl -,sxe2 + chr3R 16086066 intron,exon Mhcl -,sxe2 + chr3R 16086320 intron,exon Mhcl -,sxe2 + chr3R_7_16085001 chr3R_16085001 RAL-28 871 chr3R 16225087 16225097 chr3R 16225172 16225182 4 85 1.5 1.0 1.2 1.8 95 chr3R 16225087 intergenic not near genes chr3R 16225134 intergenic not near genes chr3R 16225182 intergenic tara + chr3R_4_16225001 chr3R_16225001 RAL-28 872 chr3R 16241786 16241818 chr3R 16242045 16242080 5 262 1.0 2.0 1.5 2.0 294 chr3R 16241786 intron tara + chr3R 16241933 intron tara + chr3R 16242080 intron tara + chr3R_5_16240001 chr3R_16240001 RAL-28 873 chr3R 16246523 16246545 chr3R 16246599 16246621 5 76 0.0 0.5 0.2 4.2 98 chr3R 16246523 intron tara + chr3R 16246572 intron tara + chr3R 16246621 intron tara + chr3R_5_16245001 chr3R_16245001 RAL-28 874 chr3R 16472581 16472599 chr3R 16472656 16472675 5 73 3.0 3.0 3.0 1.2 94 chr3R 16472581 intergenic Gyc-89Da + chr3R 16472628 5` UTR Gyc-89Da + chr3R 16472675 5` UTR Gyc-89Da + chr3R_5_16470001 chr3R_16470001 RAL-28 875 chr3R 16508433 16508459 chr3R 16508534 16508543 4 97 2.5 1.5 2.0 1.3 110 chr3R 16508433 intron CG42342 + chr3R 16508488 intron CG42342 + chr3R 16508543 intron CG42342 + chr3R_4_16505001 chr3R_16505001 RAL-28 876 chr3R 16725790 16725805 chr3R 16725871 16725873 5 78 1.0 2.5 1.8 1.8 83 chr3R 16725790 intron Ubx - chr3R 16725832 intron Ubx - chr3R 16725873 intron Ubx - chr3R_5_16725001 chr3R_16725001 RAL-28 877 chr3R 16756320 16756350 chr3R 16762509 16762541 diver 7 6187 0.0 2.5 1.2 3.2 6221 chr3R 16756320 intron bxd - chr3R 16759430 intron bxd - chr3R 16762541 intron bxd - chr3R_7_16755001 chr3R_16755001 RAL-28 878 chr3R 16796035 16796058 chr3R 16796571 16796580 5 533 0.0 1.0 0.5 3.3 545 chr3R 16796035 intergenic not near genes chr3R 16796308 intergenic not near genes chr3R 16796580 intergenic not near genes chr3R_5_16795001 chr3R_16795001 RAL-28 879 chr3R 16845154 16845176 chr3R 16845242 16845262 5 88 1.0 0.5 0.8 2.8 108 chr3R 16845154 intron iab-8 - chr3R 16845208 intron iab-8 - chr3R 16845262 intron iab-8 - chr3R_5_16845001 chr3R_16845001 RAL-28 880 chr3R 16860333 16860370 chr3R 16860411 16860446 4 78 0.0 0.5 0.2 3.3 113 chr3R 16860333 intron iab-8 - chr3R 16860390 intron iab-8 - chr3R 16860446 intron iab-8 - chr3R_4_16860001 chr3R_16860001 RAL-28 881 chr3R 17163480 17163500 chr3R 17163561 17163581 5 81 1.0 1.0 1.0 2.5 101 chr3R 17163480 intron Mur89F - chr3R 17163530 intron Mur89F - chr3R 17163581 intron Mur89F - chr3R_5_17160001 chr3R_17160001 RAL-28 882 chr3R 17294690 17294702 chr3R 17295118 17295130 BS 5 427 1.0 3.0 2.0 1.7 440 chr3R 17294690 intergenic not near genes chr3R 17294910 intergenic not near genes chr3R 17295130 intergenic not near genes chr3R_5_17290001 chr3R_17290001 RAL-28 883 chr3R 17312816 17312845 chr3R 17312901 17312930 8 85 2.5 0.5 1.5 3.2 114 chr3R 17312816 intergenic not near genes chr3R 17312873 intergenic not near genes chr3R 17312930 intergenic not near genes chr3R_8_17310001 chr3R_17310001 RAL-28 884 chr3R 17335157 17335187 chr3R 17335233 17335263 6 75 2.0 1.0 1.5 2.4 106 chr3R 17335157 intron beat-IIa - chr3R 17335210 intron beat-IIa - chr3R 17335263 intron beat-IIa - chr3R_6_17335001 chr3R_17335001 RAL-28 885 chr3R 17346691 17346717 chr3R 17348254 17348280 F-element 5 1562 2.5 1.5 2.0 1.7 1589 chr3R 17346691 intron beat-IIa - chr3R 17347486 intron beat-IIa - chr3R 17348280 intron beat-IIa - chr3R_5_17345001 chr3R_17345001 RAL-28 886 chr3R 17492214 17492220 chr3R 17492285 17492312 4 81 2.0 2.5 2.2 1.2 98 chr3R 17492214 intron Dscam3 - chr3R 17492263 intron Dscam3 - chr3R 17492312 intron Dscam3 - chr3R_4_17490001 chr3R_17490001 RAL-28 887 chr3R 17497968 17497984 chr3R 17498054 17498070 4 84 0.0 1.0 0.5 2.7 102 chr3R 17497968 intron Dscam3 - chr3R 17498019 intron Dscam3 - chr3R 17498070 intron Dscam3 - chr3R_4_17495001 chr3R_17495001 RAL-28 888 chr3R 17521569 17521582 chr3R 17521728 17521742 5 159 1.5 6.5 4.0 1.0 173 chr3R 17521569 intergenic not near genes chr3R 17521656 intergenic not near genes chr3R 17521742 intergenic not near genes chr3R_5_17520001 chr3R_17520001 RAL-28 889 chr3R 17587213 17587241 chr3R 17587396 17587423 12 182 4.0 3.0 3.5 2.7 210 chr3R 17587213 intergenic not near genes chr3R 17587318 intergenic not near genes chr3R 17587423 intergenic not near genes chr3R_12_17585001 chr3R_17585001 RAL-28 890 chr3R 17702560 17702575 chr3R 17702675 17702688 4 114 3.5 2.0 2.8 1.1 128 chr3R 17702560 intron osa - chr3R 17702624 intron osa - chr3R 17702688 intron osa - chr3R_4_17700001 chr3R_17700001 RAL-28 891 chr3R 17845207 17845218 chr3R 17845266 17845295 6 70 0.5 2.0 1.2 2.7 88 chr3R 17845207 intron tinc + chr3R 17845251 intron tinc + chr3R 17845295 intron tinc + chr3R_6_17845001 chr3R_17845001 RAL-28 892 chr3R 17925857 17925877 chr3R 17927318 17927344 hobo 5 1464 4.5 3.0 3.8 1.0 1487 chr3R 17925857 intron cpo + chr3R 17926600 intron cpo + chr3R 17927344 intron cpo + chr3R_5_17925001 chr3R_17925001 RAL-28 893 chr3R 18068001 18068022 chr3R 18068083 18068104 4 82 0.0 0.5 0.2 3.3 103 chr3R 18068001 intergenic not near genes chr3R 18068052 intergenic not near genes chr3R 18068104 intergenic not near genes chr3R_4_18065001 chr3R_18065001 RAL-28 894 chr3R 18291844 18291877 chr3R 18291927 18291958 7 83 1.0 0.5 0.8 3.9 114 chr3R 18291844 intron l(3)05822 - chr3R 18291901 intron l(3)05822 - chr3R 18291958 intron l(3)05822 - chr3R_7_18290001 chr3R_18290001 RAL-28 895 chr3R 18434024 18434033 chr3R 18434101 18434110 5 78 2.0 0.0 1.0 2.5 86 chr3R 18434024 intron fru - chr3R 18434067 intron fru - chr3R 18434110 intron fru - chr3R_5_18430001 chr3R_18430001 RAL-28 896 chr3R 18559508 18559518 chr3R 18559650 18559665 4 146 0.0 1.0 0.5 2.7 157 chr3R 18559508 intergenic CG7691 + chr3R 18559586 intergenic CG7691 + chr3R 18559665 intergenic CG7691 + chr3R_4_18555001 chr3R_18555001 RAL-28 897 chr3R 18606504 18606530 chr3R 18610735 18610762 F-element 4 4232 0.5 1.0 0.8 2.2 4258 chr3R 18606504 intron,intron qin +,CG14304 - chr3R 18608633 intron,intron qin +,CG14304 - chr3R 18610762 intron,intron qin +,CG14304 - chr3R_4_18605001 chr3R_18605001 RAL-28 898 chr3R 18791496 18791523 chr3R 18791575 18791584 5 74 1.5 0.5 1.0 2.5 88 chr3R 18791496 intron CG7720 - chr3R 18791540 intron CG7720 - chr3R 18791584 intron CG7720 - chr3R_5_18790001 chr3R_18790001 RAL-28 899 chr3R 18812076 18812108 chr3R 18812154 18812184 9 77 1.5 1.0 1.2 4.1 108 chr3R 18812076 intron CG18208 - chr3R 18812130 intron CG18208 - chr3R 18812184 intron CG18208 - chr3R_9_18810001 chr3R_18810001 RAL-28 900 chr3R 18826725 18826742 chr3R 18826930 18826947 7 205 3.5 3.5 3.5 1.6 222 chr3R 18826725 intron CG18208 - chr3R 18826836 intron CG18208 - chr3R 18826947 intron CG18208 - chr3R_7_18825001 chr3R_18825001 RAL-28 901 chr3R 18836835 18836863 chr3R 18836944 18836971 6 109 2.0 1.5 1.8 2.1 136 chr3R 18836835 intron CG18208 - chr3R 18836903 intron CG18208 - chr3R 18836971 intron CG18208 - chr3R_6_18835001 chr3R_18835001 RAL-28 902 chr3R 18888829 18888861 chr3R 18889164 18889174 13 332 1.0 3.5 2.2 4.1 345 chr3R 18888829 intergenic not near genes chr3R 18889002 intergenic not near genes chr3R 18889174 intergenic not near genes chr3R_13_18885001 chr3R_18885001 RAL-28 903 chr3R 18891262 18891286 chr3R 18891388 18891412 11 125 2.0 3.5 2.8 2.9 150 chr3R 18891262 intergenic not near genes chr3R 18891337 intergenic not near genes chr3R 18891412 intergenic not near genes chr3R_11_18890001 chr3R_18890001 RAL-28 904 chr3R 19079574 19079580 chr3R 19079656 19079665 5 84 5.5 2.5 4.0 1.0 91 chr3R 19079574 intron cdi - chr3R 19079620 intron cdi - chr3R 19079665 intron cdi - chr3R_5_19075001 chr3R_19075001 RAL-28 905 chr3R 19079587 19079602 chr3R 19079654 19079669 6 74 2.0 2.5 2.2 1.9 82 chr3R 19079587 intron cdi - chr3R 19079628 intron cdi - chr3R 19079669 intron cdi - chr3R_6_19075001 chr3R_19075001 RAL-28 906 chr3R 19136407 19136407 chr3R 19139794 19139806 Bari1 5 3389 43.5 6.5 25.0 0.2 3399 chr3R 19136407 exon Cyp12a4 + chr3R 19138106 intergenic not near genes chr3R 19139806 3` UTR Ppcs - chr3R_5_19135001 chr3R_19135001 RAL-28 907 chr3R 19248872 19248900 chr3R 19248952 19248980 4 80 1.5 0.0 0.8 2.2 108 chr3R 19248872 intergenic not near genes chr3R 19248926 intergenic not near genes chr3R 19248980 intergenic not near genes chr3R_4_19245001 chr3R_19245001 RAL-28 908 chr3R 19290548 19290578 chr3R 19290624 19290644 6 74 1.5 1.5 1.5 2.4 96 chr3R 19290548 intergenic not near genes chr3R 19290596 intergenic not near genes chr3R 19290644 intergenic not near genes chr3R_6_19290001 chr3R_19290001 RAL-28 909 chr3R 19418417 19418439 chr3R 19418508 19418530 6 92 0.0 1.5 0.8 3.3 113 chr3R 19418417 intron CG31221 + chr3R 19418474 intron CG31221 + chr3R 19418530 intron CG31221 + chr3R_6_19415001 chr3R_19415001 RAL-28 910 chr3R 19500712 19500744 chr3R 19501045 19501077 6 331 1.5 0.5 1.0 3.0 365 chr3R 19500712 intron Dys + chr3R 19500894 intron Dys + chr3R 19501077 intron Dys + chr3R_6_19500001 chr3R_19500001 RAL-28 911 chr3R 19943893 19943902 chr3R 19943964 19943982 5 77 2.0 0.0 1.0 2.5 89 chr3R 19943893 intron Hs6st - chr3R 19943938 intron Hs6st - chr3R 19943982 intron Hs6st - chr3R_5_19940001 chr3R_19940001 RAL-28 912 chr3R 20109541 20109563 chr3R 20114747 20114769 copia 4 5206 0.0 1.0 0.5 2.7 5228 chr3R 20109541 intergenic not near genes chr3R 20112155 intergenic not near genes chr3R 20114769 intergenic CG10887 + chr3R_4_20110001 chr3R_20110001 RAL-28 913 chr3R 20149600 20149625 chr3R 20151724 20151745 4 2121 10.0 19.0 14.5 0.3 2145 chr3R 20149600 intergenic not near genes chr3R 20150672 intergenic not near genes chr3R 20151745 intergenic not near genes chr3R_4_20150001 chr3R_20150001 RAL-28 914 chr3R 20331002 20331029 chr3R 20331488 20331515 roo 4 486 2.0 1.5 1.8 1.4 513 chr3R 20331002 intergenic Sirt2 + chr3R 20331258 intergenic Sirt2 + chr3R 20331515 intergenic not near genes chr3R_4_20330001 chr3R_20330001 RAL-28 915 chr3R 20411225 20411246 chr3R 20411440 20411461 7 215 3.5 2.5 3.0 1.8 236 chr3R 20411225 intron Gfrl - chr3R 20411343 intron Gfrl - chr3R 20411461 intron Gfrl - chr3R_7_20410001 chr3R_20410001 RAL-28 916 chr3R 20433102 20433129 chr3R 20433192 20433219 5 89 1.0 0.5 0.8 2.8 117 chr3R 20433102 intron Gfrl - chr3R 20433160 intron Gfrl - chr3R 20433219 intron Gfrl - chr3R_5_20430001 chr3R_20430001 RAL-28 917 chr3R 20516541 20516560 chr3R 20516897 20516915 5 356 3.5 2.5 3.0 1.2 374 chr3R 20516541 intergenic not near genes chr3R 20516728 intergenic not near genes chr3R 20516915 intergenic not near genes chr3R_5_20515001 chr3R_20515001 RAL-28 918 chr3R 20707747 20707766 chr3R 20707962 20707980 4 214 1.5 1.5 1.5 1.6 233 chr3R 20707747 intron Oamb - chr3R 20707864 intron Oamb - chr3R 20707980 intron Oamb - chr3R_4_20705001 chr3R_20705001 RAL-28 919 chr3R 20724498 20724525 chr3R 20724588 20724588 5 80 2.0 3.5 2.8 1.3 90 chr3R 20724498 intergenic not near genes chr3R 20724543 intergenic not near genes chr3R 20724588 intergenic not near genes chr3R_5_20720001 chr3R_20720001 RAL-28 920 chr3R 20735007 20735045 chr3R 20735092 20735129 7 77 3.0 3.0 3.0 1.8 122 chr3R 20735007 intergenic not near genes chr3R 20735068 intergenic not near genes chr3R 20735129 intergenic cdc2c + chr3R_7_20735001 chr3R_20735001 RAL-28 921 chr3R 20787438 20787450 chr3R 20787529 20787540 4 90 2.5 0.5 1.5 1.6 102 chr3R 20787438 intron Syp + chr3R 20787489 intron Syp + chr3R 20787540 intron Syp + chr3R_4_20785001 chr3R_20785001 RAL-28 922 chr3R 20874517 20874547 chr3R 20874602 20874632 9 85 0.5 0.0 0.2 7.5 115 chr3R 20874517 3` UTR TotB + chr3R 20874574 intergenic TotB + chr3R 20874632 intergenic TotB + chr3R_9_20870001 chr3R_20870001 RAL-28 923 chr3R 21014016 21014045 chr3R 21014091 21014123 10 77 0.5 2.0 1.2 4.5 107 chr3R 21014016 3` UTR Calx + chr3R 21014070 3` UTR Calx + chr3R 21014123 3` UTR Calx + chr3R_10_21010001 chr3R_21010001 RAL-28 924 chr3R 21141683 21141707 chr3R 21150159 21150185 Tirant 9 8475 2.0 1.0 1.5 3.6 8502 chr3R 21141683 intron SNF4Agamma + chr3R 21145934 intron SNF4Agamma + chr3R 21150185 intron SNF4Agamma + chr3R_9_21145001 chr3R_21145001 RAL-28 925 chr3R 21287649 21287678 chr3R 21288001 21288030 9 352 1.0 1.0 1.0 4.5 381 chr3R 21287649 intron SIFaR - chr3R 21287840 intron SIFaR - chr3R 21288030 intron SIFaR - chr3R_9_21285001 chr3R_21285001 RAL-28 926 chr3R 21330799 21330832 chr3R 21330889 21330922 8 90 2.0 0.5 1.2 3.6 123 chr3R 21330799 intron CG16791 - chr3R 21330860 intron CG16791 - chr3R 21330922 intron CG16791 - chr3R_8_21330001 chr3R_21330001 RAL-28 927 chr3R 21472020 21472035 chr3R 21472099 21472116 4 80 2.0 1.5 1.8 1.4 96 chr3R 21472020 intergenic not near genes chr3R 21472068 intergenic not near genes chr3R 21472116 intergenic not near genes chr3R_4_21470001 chr3R_21470001 RAL-28 928 chr3R 21505226 21505255 chr3R 21505305 21505337 6 82 0.5 1.5 1.0 3.0 111 chr3R 21505226 intron C15 + chr3R 21505282 intron C15 + chr3R 21505337 intron C15 + chr3R_6_21505001 chr3R_21505001 RAL-28 929 chr3R 21609008 21609039 chr3R 21611642 21611673 NOF 4 2634 0.5 2.5 1.5 1.6 2665 chr3R 21609008 intron InR - chr3R 21610340 intron InR - chr3R 21611673 intron InR - chr3R_4_21610001 chr3R_21610001 RAL-28 930 chr3R 21631131 21631154 chr3R 21631534 21631540 9 401 1.5 0.5 1.0 4.5 409 chr3R 21631131 intron E2f - chr3R 21631336 intron E2f - chr3R 21631540 intron E2f - chr3R_9_21630001 chr3R_21630001 RAL-28 931 chr3R 21633243 21633263 chr3R 21633489 21633509 7 246 3.5 0.5 2.0 2.3 266 chr3R 21633243 intron E2f - chr3R 21633376 intron E2f - chr3R 21633509 intron E2f - chr3R_7_21630001 chr3R_21630001 RAL-28 932 chr3R 21652542 21652570 chr3R 21652621 21652650 4 79 0.0 0.5 0.2 3.3 108 chr3R 21652542 intron E2f - chr3R 21652596 intron E2f - chr3R 21652650 intron E2f - chr3R_4_21650001 chr3R_21650001 RAL-28 933 chr3R 21761133 21761154 chr3R 21768510 21768527 mdg1 7 7385 1.0 3.0 2.0 2.3 7394 chr3R 21761133 exon CG42335 + chr3R 21764830 intron CG42335 + chr3R 21768527 exon CG42335 + chr3R_7_21760001 chr3R_21760001 RAL-28 934 chr3R 8339246 8339246 chr3R 21907534 21907534 5 13568288 10.5 13.0 11.8 0.4 13568288 chr3R 8339246 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907534 intergenic CG6678 + chr3R_5_15120001 chr3R_15120001 RAL-28 935 chr3R 15286987 15286988 chr3R 21907534 21907534 4 6620546 9.5 13.0 11.2 0.3 6620547 chr3R 15286987 intron Tm1 + chr3R 18597260 intron,exon qin +,CG14304 - chr3R 21907534 intergenic CG6678 + chr3R_4_18595001 chr3R_18595001 RAL-28 936 chr3R 21907534 21907534 chr3R 24389465 24389465 5 2481931 10.0 8.5 9.2 0.5 2481931 chr3R 21907534 intergenic CG6678 + chr3R 23148500 intergenic not near genes chr3R 24389465 intron CG5768 - chr3R_5_23145001 chr3R_23145001 RAL-28 937 chr3R 21907534 21907534 chr3R 28831801 28831802 13 6924268 10.0 18.0 14.0 0.9 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_13_25365001 chr3R_25365001 RAL-28 938 chr3R 8339246 8339247 chr3R 21907535 21907535 6 13568288 10.5 13.0 11.8 0.5 13568289 chr3R 8339246 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907535 intergenic CG6678 + chr3R_6_15120001 chr3R_15120001 RAL-28 939 chr3R 21907535 21907535 chr3R 28831801 28831804 27 6924267 10.5 18.0 14.2 1.8 6924269 chr3R 21907535 intergenic CG6678 + chr3R 25369670 intron Fur1 - chr3R 28831804 intron WASp - chr3R_27_25365001 chr3R_25365001 RAL-28 940 chr3R 21907536 21907536 chr3R 28831801 28831802 22 6924266 10.5 18.0 14.2 1.4 6924266 chr3R 21907536 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831802 intron WASp - chr3R_22_25365001 chr3R_25365001 RAL-28 941 chr3R 21924010 21924038 chr3R 21924099 21924126 6 82 5.5 0.0 2.8 1.6 116 chr3R 21924010 intergenic not near genes chr3R 21924068 intergenic not near genes chr3R 21924126 intergenic not near genes chr3R_6_21920001 chr3R_21920001 RAL-28 942 chr3R 21952137 21952164 chr3R 21952222 21952248 6 83 0.5 2.0 1.2 2.7 111 chr3R 21952137 intron Eip93F + chr3R 21952192 intron Eip93F + chr3R 21952248 intron Eip93F + chr3R_6_21950001 chr3R_21950001 RAL-28 943 chr3R 21958603 21958633 chr3R 21958693 21958722 7 89 3.0 2.0 2.5 2.0 119 chr3R 21958603 intron Eip93F + chr3R 21958662 intron Eip93F + chr3R 21958722 intron Eip93F + chr3R_7_21955001 chr3R_21955001 RAL-28 944 chr3R 22234689 22234715 chr3R 22236007 22236032 pogo 5 1318 1.0 0.5 0.8 2.8 1343 chr3R 22234689 intron SKIP + chr3R 22235360 intron SKIP + chr3R 22236032 intron SKIP + chr3R_5_22235001 chr3R_22235001 RAL-28 945 chr3R 22239503 22239525 chr3R 22248562 22248581 roo 4 9058 1.5 1.5 1.5 1.6 9078 chr3R 22239503 intron SKIP + chr3R 22244042 intron SKIP + chr3R 22248581 intron SKIP + chr3R_4_22240001 chr3R_22240001 RAL-28 946 chr3R 22292486 22292503 chr3R 22292566 22292580 6 80 2.5 2.5 2.5 1.7 94 chr3R 22292486 intron SKIP + chr3R 22292533 intron SKIP + chr3R 22292580 intron SKIP + chr3R_6_22290001 chr3R_22290001 RAL-28 947 chr3R 22428601 22428609 chr3R 22428659 22428685 4 67 2.0 3.0 2.5 1.1 84 chr3R 22428601 intron CG13847 - chr3R 22428643 intron CG13847 - chr3R 22428685 intron CG13847 - chr3R_4_22425001 chr3R_22425001 RAL-28 948 chr3R 22450541 22450574 chr3R 22453181 22453213 NOF 7 2639 3.5 2.5 3.0 1.8 2672 chr3R 22450541 intron CG34376 + chr3R 22451877 intron CG34376 + chr3R 22453213 intron CG34376 + chr3R_7_22450001 chr3R_22450001 RAL-28 949 chr3R 22492386 22492414 chr3R 22492467 22492495 11 79 1.5 2.0 1.8 3.9 109 chr3R 22492386 intergenic CG7045 + chr3R 22492440 intergenic CG7045 + chr3R 22492495 intergenic CG7045 +,CG7046 + chr3R_11_22490001 chr3R_22490001 RAL-28 950 chr3R 22538443 22538469 chr3R 22538528 22538554 5 85 1.0 2.0 1.5 2.0 111 chr3R 22538443 intron CG5326 - chr3R 22538498 intron CG5326 - chr3R 22538554 intron CG5326 - chr3R_5_22535001 chr3R_22535001 RAL-28 951 chr3R 22769091 22769126 chr3R 22769165 22769203 8 74 1.5 1.0 1.2 3.6 112 chr3R 22769091 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769147 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769203 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R_8_22765001 chr3R_22765001 RAL-28 952 chr3R 22797763 22797938 chr3R 22797849 22798034 10 91 0.5 0.0 0.2 8.3 271 chr3R 22797763 intergenic not near genes chr3R 22797898 intergenic not near genes chr3R 22798034 intergenic not near genes chr3R_10_22795001 chr3R_22795001 RAL-28 953 chr3R 22860156 22860173 chr3R 22860248 22860264 7 92 0.5 0.0 0.2 5.8 108 chr3R 22860156 intergenic not near genes chr3R 22860210 intergenic not near genes chr3R 22860264 intergenic not near genes chr3R_7_22860001 chr3R_22860001 RAL-28 954 chr3R 22888198 22888222 chr3R 22888470 22888487 4 270 3.5 1.5 2.5 1.1 289 chr3R 22888198 intergenic not near genes chr3R 22888342 intergenic not near genes chr3R 22888487 intergenic not near genes chr3R_4_22885001 chr3R_22885001 RAL-28 955 chr3R 22919168 22919186 chr3R 22919262 22919282 5 96 2.5 5.0 3.8 1.0 114 chr3R 22919168 intron klg + chr3R 22919225 intron klg + chr3R 22919282 intron klg + chr3R_5_22915001 chr3R_22915001 RAL-28 956 chr3R 22927873 22927905 chr3R 22927968 22927997 9 89 1.5 5.0 3.2 2.1 124 chr3R 22927873 intron klg + chr3R 22927935 intron klg + chr3R 22927997 intron klg + chr3R_9_22925001 chr3R_22925001 RAL-28 957 chr3R 22990354 22990385 chr3R 22990607 22990639 8 247 1.0 4.0 2.5 2.3 285 chr3R 22990354 intron,exon Nha2 -,Or94b + chr3R 22990496 intron,intron Nha2 -,Or94b + chr3R 22990639 intron Nha2 - chr3R_8_22990001 chr3R_22990001 RAL-28 958 chr3R 23016198 23016210 chr3R 23016275 23016287 4 77 4.0 1.0 2.5 1.1 89 chr3R 23016198 intergenic not near genes chr3R 23016242 intergenic not near genes chr3R 23016287 intergenic not near genes chr3R_4_23015001 chr3R_23015001 RAL-28 959 chr3R 23180188 23180214 chr3R 23180269 23180297 9 81 1.0 2.0 1.5 3.6 109 chr3R 23180188 intron Irk1 + chr3R 23180242 intron Irk1 + chr3R 23180297 intron Irk1 + chr3R_9_23180001 chr3R_23180001 RAL-28 960 chr3R 23182686 23182700 chr3R 23182769 23182783 4 83 0.5 0.5 0.5 2.7 97 chr3R 23182686 intron Irk1 + chr3R 23182734 intron Irk1 + chr3R 23182783 intron Irk1 + chr3R_4_23180001 chr3R_23180001 RAL-28 961 chr3R 23277346 23277372 chr3R 23277436 23277461 6 90 0.0 0.5 0.2 5.0 115 chr3R 23277346 intron orb - chr3R 23277404 intron orb - chr3R 23277461 intron orb - chr3R_6_23275001 chr3R_23275001 RAL-28 962 chr3R 23342634 23342669 chr3R 23342769 23342804 7 134 1.0 1.0 1.0 3.5 170 chr3R 23342634 intron pnt - chr3R 23342719 intron pnt - chr3R 23342804 intron pnt - chr3R_7_23340001 chr3R_23340001 RAL-28 963 chr3R 23557876 23557896 chr3R 23557954 23557974 10 78 1.5 0.5 1.0 5.0 98 chr3R 23557876 intron beat-IV + chr3R 23557925 intron beat-IV + chr3R 23557974 intron beat-IV + chr3R_10_23555001 chr3R_23555001 RAL-28 964 chr3R 23558406 23558423 chr3R 23560186 23560204 Bari1 5 1781 0.5 2.0 1.2 2.3 1798 chr3R 23558406 intron beat-IV + chr3R 23559305 intron beat-IV + chr3R 23560204 intron beat-IV + chr3R_5_23555001 chr3R_23555001 RAL-28 965 chr3R 23608570 23608596 chr3R 23608698 23608724 8 125 5.0 2.0 3.5 1.8 154 chr3R 23608570 intron CG31145 - chr3R 23608647 intron CG31145 - chr3R 23608724 exon CG31145 - chr3R_8_23605001 chr3R_23605001 RAL-28 966 chr3R 23667905 23667910 chr3R 23675137 23675159 7 7235 15.5 8.0 11.8 0.5 7254 chr3R 23667905 intron CG31145 - chr3R 23671532 intergenic not near genes chr3R 23675159 intergenic not near genes chr3R_7_23670001 chr3R_23670001 RAL-28 967 chr3R 23684698 23684728 chr3R 23685184 23685212 roo 8 481 0.5 2.5 1.5 3.2 514 chr3R 23684698 exon CG18754 + chr3R 23684955 intron CG18754 + chr3R 23685212 exon CG18754 + chr3R_8_23680001 chr3R_23680001 RAL-28 968 chr3R 23688484 23688506 chr3R 23688575 23688587 4 82 1.5 5.5 3.5 0.9 103 chr3R 23688484 intergenic SPE + chr3R 23688536 intergenic SPE +,CG10254 - chr3R 23688587 intergenic CG10254 -,SPE + chr3R_4_23685001 chr3R_23685001 RAL-28 969 chr3R 23714718 23714744 chr3R 23714812 23714838 5 92 0.5 1.0 0.8 2.8 120 chr3R 23714718 intron nau - chr3R 23714778 intron nau - chr3R 23714838 intron nau - chr3R_5_23710001 chr3R_23710001 RAL-28 970 chr3R 23820641 23820663 chr3R 23820725 23820747 5 84 2.5 2.0 2.2 1.6 106 chr3R 23820641 5` UTR CG34355 + chr3R 23820694 5` UTR CG34355 + chr3R 23820747 5` UTR CG34355 + chr3R_5_23820001 chr3R_23820001 RAL-28 971 chr3R 23835411 23835436 chr3R 23844561 23844586 roo 6 9150 1.5 3.5 2.5 1.7 9175 chr3R 23835411 intron CG34355 + chr3R 23839998 intron CG34355 + chr3R 23844586 intron CG34355 + chr3R_6_23835001 chr3R_23835001 RAL-28 972 chr3R 23944912 23944936 chr3R 23944997 23945021 9 85 2.5 4.5 3.5 2.0 109 chr3R 23944912 intron CG12268 - chr3R 23944966 intron CG12268 - chr3R 23945021 exon CG12268 - chr3R_9_23940001 chr3R_23940001 RAL-28 973 chr3R 24072085 24072115 chr3R 24072523 24072553 jockey 8 438 3.5 2.5 3.0 2.0 468 chr3R 24072085 intron 4EHP - chr3R 24072319 intron 4EHP - chr3R 24072553 intron 4EHP - chr3R_8_24070001 chr3R_24070001 RAL-28 974 chr3R 24076915 24076949 chr3R 24078382 24078416 hobo 10 1466 3.5 2.0 2.8 2.6 1501 chr3R 24076915 intron 4EHP - chr3R 24077666 intron 4EHP - chr3R 24078416 intron 4EHP - chr3R_10_24075001 chr3R_24075001 RAL-28 975 chr3R 24100464 24100611 chr3R 24100559 24100835 6 202 2.5 2.5 2.5 1.7 371 chr3R 24100464 intron 4EHP - chr3R 24100650 intron 4EHP - chr3R 24100835 intron 4EHP - chr3R_6_24100001 chr3R_24100001 RAL-28 976 chr3R 24433481 24433501 chr3R 24433560 24433580 4 78 0.5 2.5 1.5 1.6 99 chr3R 24433481 intron nAChRalpha1 - chr3R 24433530 intron nAChRalpha1 - chr3R 24433580 intron nAChRalpha1 - chr3R_4_24430001 chr3R_24430001 RAL-28 977 chr3R 24624375 24624388 chr3R 24624463 24624477 4 89 1.5 2.0 1.8 1.4 102 chr3R 24624375 intron Syx18 - chr3R 24624426 intron Syx18 - chr3R 24624477 exon Syx18 - chr3R_4_24620001 chr3R_24620001 RAL-28 978 chr3R 24670160 24670198 chr3R 24670244 24670282 6 84 1.0 2.0 1.5 2.4 122 chr3R 24670160 intron slo + chr3R 24670221 intron slo + chr3R 24670282 intron slo + chr3R_6_24670001 chr3R_24670001 RAL-28 979 chr3R 24671228 24671234 chr3R 24671303 24671311 4 76 2.5 2.5 2.5 1.1 83 chr3R 24671228 intron slo + chr3R 24671270 intron slo + chr3R 24671311 intron slo + chr3R_4_24670001 chr3R_24670001 RAL-28 980 chr3R 24743054 24743061 chr3R 24743139 24743145 4 84 1.5 2.0 1.8 1.4 91 chr3R 24743054 intron tok + chr3R 24743100 intron tok + chr3R 24743145 intron tok + chr3R_4_24740001 chr3R_24740001 RAL-28 981 chr3R 24912479 24912507 chr3R 24912561 24912589 4 81 0.5 1.5 1.0 2.0 110 chr3R 24912479 intergenic not near genes chr3R 24912534 intergenic CR44267 + chr3R 24912589 intergenic CR44267 + chr3R_4_24910001 chr3R_24910001 RAL-28 982 chr3R 24927124 24927149 chr3R 24931913 24931940 Doc 6 4790 3.0 0.5 1.8 2.1 4816 chr3R 24927124 intergenic Trf4-2 + chr3R 24929532 intergenic not near genes chr3R 24931940 intergenic CG11771 + chr3R_6_24925001 chr3R_24925001 RAL-28 983 chr3R 24957480 24957507 chr3R 24957559 24957587 4 80 4.0 1.5 2.8 1.1 107 chr3R 24957480 intergenic not near genes chr3R 24957534 intergenic not near genes chr3R 24957587 intergenic not near genes chr3R_4_24955001 chr3R_24955001 RAL-28 984 chr3R 24974913 24974936 chr3R 24974992 24975014 7 78 0.5 1.0 0.8 3.9 101 chr3R 24974913 intergenic not near genes chr3R 24974964 intergenic not near genes chr3R 24975014 intergenic not near genes chr3R_7_24970001 chr3R_24970001 RAL-28 985 chr3R 25004900 25004922 chr3R 25004982 25005004 5 83 0.0 1.5 0.8 2.8 104 chr3R 25004900 intron tnc + chr3R 25004952 intron tnc + chr3R 25005004 intron tnc + chr3R_5_25000001 chr3R_25000001 RAL-28 986 chr3R 25302681 25302710 chr3R 25302930 25302959 7 248 3.0 5.0 4.0 1.4 278 chr3R 25302681 exon CG31370 + chr3R 25302820 exon CG31370 + chr3R 25302959 exon CG31370 + chr3R_7_25300001 chr3R_25300001 RAL-28 987 chr3R 25328989 25329008 chr3R 25329466 25329487 8 478 2.0 1.0 1.5 3.2 498 chr3R 25328989 exon CHKov1 - chr3R 25329238 5` UTR CHKov1 - chr3R 25329487 intergenic CHKov2 -,CHKov1 - chr3R_8_25325001 chr3R_25325001 RAL-28 988 chr3R 25377093 25377116 chr3R 25377359 25377382 8 266 3.5 4.0 3.8 1.7 289 chr3R 25377093 intron Fur1 - chr3R 25377238 intron Fur1 - chr3R 25377382 intron Fur1 - chr3R_8_25375001 chr3R_25375001 RAL-28 989 chr3R 25448365 25448386 chr3R 25448899 25448920 4 534 1.0 1.0 1.0 2.0 555 chr3R 25448365 intron Fur1 - chr3R 25448642 intron Fur1 - chr3R 25448920 intron Fur1 - chr3R_4_25445001 chr3R_25445001 RAL-28 990 chr3R 25570052 25570063 chr3R 25570138 25570148 4 85 3.5 0.5 2.0 1.3 96 chr3R 25570052 intron msi + chr3R 25570100 intron msi + chr3R 25570148 intron msi + chr3R_4_25570001 chr3R_25570001 RAL-28 991 chr3R 25669064 25669096 chr3R 25669158 25669190 12 93 1.5 0.5 1.0 6.0 126 chr3R 25669064 intron Lgr3 + chr3R 25669127 intron Lgr3 + chr3R 25669190 intron Lgr3 + chr3R_12_25665001 chr3R_25665001 RAL-28 992 chr3R 25689126 25689160 chr3R 25689234 25689268 6 108 2.5 1.5 2.0 2.0 142 chr3R 25689126 intergenic not near genes chr3R 25689197 intergenic not near genes chr3R 25689268 intergenic not near genes chr3R_6_25685001 chr3R_25685001 RAL-28 993 chr3R 25765878 25765907 chr3R 25765956 25765967 7 75 2.0 4.5 3.2 1.7 89 chr3R 25765878 intergenic not near genes chr3R 25765922 intergenic not near genes chr3R 25765967 intergenic not near genes chr3R_7_25765001 chr3R_25765001 RAL-28 994 chr3R 25801280 25801289 chr3R 25802250 25802273 4 980 1.0 1.0 1.0 2.0 993 chr3R 25801280 intergenic not near genes chr3R 25801776 intergenic not near genes chr3R 25802273 intergenic not near genes chr3R_4_25800001 chr3R_25800001 RAL-28 995 chr3R 25832704 25832717 chr3R 25841884 25841899 roo 5 9181 1.5 5.0 3.2 1.2 9195 chr3R 25832704 exon alpha4GT2 + chr3R 25837302 intron alpha4GT2 + chr3R 25841899 exon alpha4GT2 + chr3R_5_25835001 chr3R_25835001 RAL-28 996 chr3R 26093844 26093874 chr3R 26093922 26093952 10 76 2.0 3.0 2.5 2.9 108 chr3R 26093844 intron dys - chr3R 26093898 intron dys - chr3R 26093952 intron dys - chr3R_10_26090001 chr3R_26090001 RAL-28 997 chr3R 26122466 26122480 chr3R 26122542 26122551 4 74 2.5 3.0 2.8 1.1 85 chr3R 26122466 intron CG31324 + chr3R 26122508 intron CG31324 + chr3R 26122551 intron CG31324 + chr3R_4_26120001 chr3R_26120001 RAL-28 998 chr3R 26166179 26166205 chr3R 26166263 26166291 7 84 0.5 0.5 0.5 4.7 112 chr3R 26166179 intergenic not near genes chr3R 26166235 intergenic not near genes chr3R 26166291 intergenic not near genes chr3R_7_26165001 chr3R_26165001 RAL-28 999 chr3R 26265817 26265833 chr3R 26265905 26265921 5 88 3.5 2.0 2.8 1.3 104 chr3R 26265817 intron CG6154 + chr3R 26265869 intron CG6154 + chr3R 26265921 intron CG6154 + chr3R_5_26265001 chr3R_26265001 RAL-28 1000 chr3R 26292117 26292139 chr3R 26292196 26292219 5 80 1.5 2.5 2.0 1.7 102 chr3R 26292117 intergenic not near genes chr3R 26292168 intergenic not near genes chr3R 26292219 intergenic not near genes chr3R_5_26290001 chr3R_26290001 RAL-28 1001 chr3R 26320360 26320368 chr3R 26320547 26320554 4 187 3.0 2.0 2.5 1.1 194 chr3R 26320360 intron CG33970 + chr3R 26320457 intron CG33970 + chr3R 26320554 intron CG33970 + chr3R_4_26320001 chr3R_26320001 RAL-28 1002 chr3R 26325688 26325709 chr3R 26325771 26325794 9 85 4.5 1.5 3.0 2.2 106 chr3R 26325688 intron CG33970 + chr3R 26325741 intron CG33970 + chr3R 26325794 intron CG33970 + chr3R_9_26325001 chr3R_26325001 RAL-28 1003 chr3R 26425898 26425905 chr3R 26425958 26425985 4 76 1.5 4.0 2.8 1.1 87 chr3R 26425898 intron CR31084 + chr3R 26425942 intron CR31084 + chr3R 26425985 intron CR31084 + chr3R_4_26425001 chr3R_26425001 RAL-28 1004 chr3R 26450521 26450547 chr3R 26450619 26450645 7 98 2.5 3.0 2.8 1.8 124 chr3R 26450521 exon Hex-t1 + chr3R 26450583 3` UTR Hex-t1 + chr3R 26450645 intergenic Hex-t2 +,Hex-t1 + chr3R_7_26450001 chr3R_26450001 RAL-28 1005 chr3R 26553209 26553230 chr3R 26553712 26553731 5 502 0.0 1.5 0.8 2.8 522 chr3R 26553209 intron scrib + chr3R 26553470 intron scrib + chr3R 26553731 intron scrib + chr3R_5_26550001 chr3R_26550001 RAL-28 1006 chr3R 26558326 26558349 chr3R 26565637 26565657 Stalker4 4 7310 2.0 1.5 1.8 1.4 7331 chr3R 26558326 intron scrib + chr3R 26561992 intron scrib + chr3R 26565657 intron scrib + chr3R_4_26560001 chr3R_26560001 RAL-28 1007 chr3R 26607739 26607755 chr3R 26607815 26607831 6 76 5.0 2.0 3.5 1.3 92 chr3R 26607739 5` UTR CR44951 + chr3R 26607785 5` UTR CR44951 + chr3R 26607831 5` UTR CR44951 + chr3R_6_26605001 chr3R_26605001 RAL-28 1008 chr3R 26695581 26695589 chr3R 26695673 26695687 4 101 2.0 2.5 2.2 1.2 106 chr3R 26695581 intergenic not near genes chr3R 26695634 intergenic not near genes chr3R 26695687 intergenic not near genes chr3R_4_26695001 chr3R_26695001 RAL-28 1009 chr3R 26750924 26750949 chr3R 26751051 26751052 4 121 0.5 0.0 0.2 3.3 128 chr3R 26750924 intergenic not near genes chr3R 26750988 intergenic not near genes chr3R 26751052 intergenic not near genes chr3R_4_26750001 chr3R_26750001 RAL-28 1010 chr3R 26857881 26857908 chr3R 26857966 26857992 7 84 3.0 2.5 2.8 1.8 111 chr3R 26857881 intron Lerp - chr3R 26857936 intron Lerp - chr3R 26857992 intron Lerp - chr3R_7_26855001 chr3R_26855001 RAL-28 1011 chr3R 27140519 27140546 chr3R 27148127 27148156 412 8 7609 1.0 3.0 2.0 2.7 7637 chr3R 27140519 intron CG6051 - chr3R 27144338 intron CG6051 - chr3R 27148156 intron CG6051 - chr3R_8_27140001 chr3R_27140001 RAL-28 1012 chr3R 27241400 27241419 chr3R 27244700 27244719 6 3300 18.5 19.0 18.8 0.3 3319 chr3R 27241400 exon CG17991 + chr3R 27243060 exon CG18766 - chr3R 27244719 intron CG18766 - chr3R_6_27240001 chr3R_27240001 RAL-28 1013 chr3R 27245599 27245616 chr3R 27245690 27245704 4 90 4.0 1.5 2.8 1.1 105 chr3R 27245599 intergenic CG18766 - chr3R 27245652 intergenic CG18766 - chr3R 27245704 intergenic CG18766 - chr3R_4_27245001 chr3R_27245001 RAL-28 1014 chr3R 27300864 27300876 chr3R 27300955 27300968 4 92 0.5 1.0 0.8 2.2 104 chr3R 27300864 intron CG3339 - chr3R 27300916 intron CG3339 - chr3R 27300968 intron CG3339 - chr3R_4_27300001 chr3R_27300001 RAL-28 1015 chr3R 27315994 27316012 chr3R 27316070 27316088 6 76 3.5 2.0 2.8 1.6 94 chr3R 27315994 intron CG3339 - chr3R 27316041 intron CG3339 - chr3R 27316088 exon CG3339 - chr3R_6_27315001 chr3R_27315001 RAL-28 1016 chr3R 27393675 27393704 chr3R 27393957 27393974 9 280 2.0 0.5 1.2 4.1 299 chr3R 27393675 intron side - chr3R 27393824 intron side - chr3R 27393974 intron side - chr3R_9_27390001 chr3R_27390001 RAL-28 1017 chr3R 27399571 27399598 chr3R 27399649 27399655 6 74 1.5 4.0 2.8 1.6 84 chr3R 27399571 intron side - chr3R 27399613 intron side - chr3R 27399655 intron side - chr3R_6_27395001 chr3R_27395001 RAL-28 1018 chr3R 27457862 27457892 chr3R 27457953 27457970 7 90 2.0 0.5 1.2 3.2 108 chr3R 27457862 intergenic not near genes chr3R 27457916 intergenic not near genes chr3R 27457970 intergenic not near genes chr3R_7_27455001 chr3R_27455001 RAL-28 1019 chr3R 27619700 27619731 chr3R 27619815 27619815 10 109 1.0 2.5 1.8 3.6 115 chr3R 27619700 intron Tusp + chr3R 27619758 intron Tusp + chr3R 27619815 intron Tusp + chr3R_10_27615001 chr3R_27615001 RAL-28 1020 chr3R 27622233 27622255 chr3R 27622328 27622350 5 92 2.5 1.0 1.8 1.8 117 chr3R 27622233 intron Tusp + chr3R 27622292 intron Tusp + chr3R 27622350 intron Tusp + chr3R_5_27620001 chr3R_27620001 RAL-28 1021 chr3R 27627088 27627120 chr3R 27627190 27627222 9 101 3.0 3.5 3.2 2.1 134 chr3R 27627088 intron Tusp + chr3R 27627155 intron Tusp + chr3R 27627222 intron Tusp + chr3R_9_27625001 chr3R_27625001 RAL-28 1022 chr3R 27799942 27799962 chr3R 27800024 27800044 4 82 3.0 2.5 2.8 1.1 102 chr3R 27799942 intron CG34353 - chr3R 27799993 intron CG34353 - chr3R 27800044 intron CG34353 - chr3R_4_27795001 chr3R_27795001 RAL-28 1023 chr3R 27856759 27856787 chr3R 27858240 27858270 hopper2 6 1481 1.5 1.5 1.5 2.4 1511 chr3R 27856759 intron CG34353 - chr3R 27857514 intron CG34353 - chr3R 27858270 intron CG34353 - chr3R_6_27855001 chr3R_27855001 RAL-28 1024 chr3R 27862954 27862982 chr3R 27868257 27868277 Transpac 7 5302 2.5 2.5 2.5 2.0 5323 chr3R 27862954 intron CG34353 - chr3R 27865616 intron CG34353 - chr3R 27868277 intron CG34353 - chr3R_7_27865001 chr3R_27865001 RAL-28 1025 chr3R 27900335 27900365 chr3R 27900417 27900447 5 82 1.0 1.0 1.0 2.5 112 chr3R 27900335 intron CG34353 - chr3R 27900391 intron CG34353 - chr3R 27900447 intron CG34353 - chr3R_5_27900001 chr3R_27900001 RAL-28 1026 chr3R 28068493 28068519 chr3R 28073935 28073960 I-element 6 5442 1.0 0.5 0.8 3.3 5467 chr3R 28068493 intron CG34362 + chr3R 28071226 intron CG34362 + chr3R 28073960 intron CG34362 + chr3R_6_28070001 chr3R_28070001 RAL-28 1027 chr3R 28102572 28102597 chr3R 28102810 28102835 6 238 0.5 3.5 2.0 2.0 263 chr3R 28102572 intergenic not near genes chr3R 28102704 intergenic not near genes chr3R 28102835 intergenic not near genes chr3R_6_28100001 chr3R_28100001 RAL-28 1028 chr3R 28103324 28103350 chr3R 28103417 28103434 7 91 3.0 0.0 1.5 2.8 110 chr3R 28103324 intergenic not near genes chr3R 28103379 intergenic not near genes chr3R 28103434 intergenic not near genes chr3R_7_28100001 chr3R_28100001 RAL-28 1029 chr3R 28118572 28118858 chr3R 28118702 28118938 11 127 4.5 3.0 3.8 2.3 366 chr3R 28118572 intergenic not near genes chr3R 28118755 intergenic not near genes chr3R 28118938 intergenic not near genes chr3R_11_28115001 chr3R_28115001 RAL-28 1030 chr3R 28169842 28169873 chr3R 28170028 28170057 8 185 0.5 0.5 0.5 5.3 215 chr3R 28169842 intron CG34354 + chr3R 28169950 intron CG34354 + chr3R 28170057 intron CG34354 + chr3R_8_28165001 chr3R_28165001 RAL-28 1031 chr3R 28201831 28201853 chr3R 28201928 28201949 6 96 3.5 2.5 3.0 1.5 118 chr3R 28201831 intron CG34354 + chr3R 28201890 intron CG34354 + chr3R 28201949 intron CG34354 + chr3R_6_28200001 chr3R_28200001 RAL-28 1032 chr3R 28233777 28233810 chr3R 28234012 28234046 5 236 2.0 0.5 1.2 2.3 269 chr3R 28233777 intron CG34354 + chr3R 28233912 intron CG34354 + chr3R 28234046 intron CG34354 + chr3R_5_28230001 chr3R_28230001 RAL-28 1033 chr3R 28253339 28253370 chr3R 28255848 28255879 jockey 5 2509 1.0 1.5 1.2 2.3 2540 chr3R 28253339 intergenic not near genes chr3R 28254609 intergenic not near genes chr3R 28255879 intergenic not near genes chr3R_5_28250001 chr3R_28250001 RAL-28 1034 chr3R 28282986 28283017 chr3R 28283615 28283646 6 629 2.0 3.5 2.8 1.6 660 chr3R 28282986 exon CG34436 + chr3R 28283316 exon CG34436 + chr3R 28283646 intergenic CG34437 +,CG34436 + chr3R_6_28280001 chr3R_28280001 RAL-28 1035 chr3R 28302105 28302130 chr3R 28302543 28302569 jockey 4 439 2.5 1.5 2.0 1.3 464 chr3R 28302105 intergenic not near genes chr3R 28302337 intergenic not near genes chr3R 28302569 intergenic not near genes chr3R_4_28300001 chr3R_28300001 RAL-28 1036 chr3R 28425192 28425216 chr3R 28425271 28425295 6 76 2.0 0.5 1.2 2.7 103 chr3R 28425192 intron beat-VI + chr3R 28425244 intron beat-VI + chr3R 28425295 intron beat-VI + chr3R_6_28425001 chr3R_28425001 RAL-28 1037 chr3R 28673631 28673649 chr3R 28673716 28673717 4 81 0.5 1.5 1.0 2.0 86 chr3R 28673631 intergenic not near genes chr3R 28673674 intergenic not near genes chr3R 28673717 intergenic not near genes chr3R_4_28670001 chr3R_28670001 RAL-28 1038 chr3R 28792872 28792903 chr3R 28797967 28797998 jockey 6 5091 1.0 0.0 0.5 4.0 5126 chr3R 28792872 intergenic not near genes chr3R 28795435 intergenic not near genes chr3R 28797998 intergenic not near genes chr3R_6_28795001 chr3R_28795001 RAL-28 1039 chr3R 21907534 21907536 chr3R 28831801 28831802 38 6924266 10.5 18.0 14.2 2.5 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_38_25365001 chr3R_25365001 RAL-28 1040 chr3R 28845986 28846014 chr3R 28846071 28846104 4 85 0.0 0.5 0.2 3.3 118 chr3R 28845986 exon spg + chr3R 28846045 intron spg + chr3R 28846104 intron spg + chr3R_4_28845001 chr3R_28845001 RAL-28 1041 chr3R 28971164 28971187 chr3R 28971245 28971261 4 79 2.0 1.0 1.5 1.6 97 chr3R 28971164 5` UTR CR45669 + chr3R 28971212 5` UTR CR45669 + chr3R 28971261 5` UTR CR45669 + chr3R_4_28970001 chr3R_28970001 RAL-28 1042 chr3R 29017140 29017155 chr3R 29017231 29017245 4 92 1.5 2.0 1.8 1.4 105 chr3R 29017140 intron wat - chr3R 29017192 intron wat - chr3R 29017245 intron wat - chr3R_4_29015001 chr3R_29015001 RAL-28 1043 chr3R 29079383 29079410 chr3R 29080755 29080782 NOF 7 1372 2.0 3.0 2.5 2.0 1399 chr3R 29079383 intron CG11873 + chr3R 29080082 intron CG11873 + chr3R 29080782 intron CG11873 + chr3R_7_29080001 chr3R_29080001 RAL-28 1044 chr3R 29213064 29213091 chr3R 29213147 29213174 9 82 4.0 1.5 2.8 2.4 110 chr3R 29213064 intergenic not near genes chr3R 29213119 intergenic not near genes chr3R 29213174 intergenic not near genes chr3R_9_29210001 chr3R_29210001 RAL-28 1045 chr3R 29239228 29239247 chr3R 29245519 29245538 4 6290 5.5 8.5 7.0 0.5 6310 chr3R 29239228 exon CG31427 - chr3R 29242383 exon CG31445 - chr3R 29245538 exon SP1029 - chr3R_4_29240001 chr3R_29240001 RAL-28 1046 chr3R 29329176 29329195 chr3R 29329518 29329538 5 342 1.5 0.0 0.8 2.8 362 chr3R 29329176 intergenic not near genes chr3R 29329357 intergenic not near genes chr3R 29329538 intergenic not near genes chr3R_5_29325001 chr3R_29325001 RAL-28 1047 chr3R 29384847 29384874 chr3R 29384970 29384998 7 121 2.0 2.0 2.0 2.3 151 chr3R 29384847 intron Ptp99A + chr3R 29384922 intron Ptp99A + chr3R 29384998 intron Ptp99A + chr3R_7_29380001 chr3R_29380001 RAL-28 1048 chr3R 29505921 29505925 chr3R 29505997 29506002 4 76 1.0 4.0 2.5 1.1 81 chr3R 29505921 intergenic not near genes chr3R 29505962 intergenic not near genes chr3R 29506002 intergenic not near genes chr3R_4_29505001 chr3R_29505001 RAL-28 1049 chr3R 29550255 29550275 chr3R 29550336 29550339 12 79 3.5 2.0 2.8 3.2 84 chr3R 29550255 intergenic not near genes chr3R 29550297 intergenic not near genes chr3R 29550339 intergenic not near genes chr3R_12_29550001 chr3R_29550001 RAL-28 1050 chr3R 29590378 29590399 chr3R 29590471 29590492 12 93 4.0 4.0 4.0 2.4 114 chr3R 29590378 intron CG31041 - chr3R 29590435 intron CG31041 - chr3R 29590492 intron CG31041 - chr3R_12_29590001 chr3R_29590001 RAL-28 1051 chr3R 29627567 29627596 chr3R 29627654 29627677 10 88 4.0 1.5 2.8 2.6 110 chr3R 29627567 intergenic not near genes chr3R 29627622 intergenic not near genes chr3R 29627677 intergenic not near genes chr3R_10_29625001 chr3R_29625001 RAL-28 1052 chr3R 29738266 29738298 chr3R 29739733 29739761 hobo 7 1466 3.5 0.5 2.0 2.3 1495 chr3R 29738266 intergenic CG1969 +,CG7598 + chr3R 29739014 intron CG1969 + chr3R 29739761 5` UTR CG1969 + chr3R_7_29735001 chr3R_29735001 RAL-28 1053 chr3R 29769687 29769714 chr3R 29769769 29769795 4 82 1.0 1.5 1.2 1.8 108 chr3R 29769687 intron kay + chr3R 29769741 intron kay + chr3R 29769795 intron kay + chr3R_4_29765001 chr3R_29765001 RAL-28 1054 chr3R 29880589 29880603 chr3R 29880669 29880686 4 78 4.0 0.5 2.2 1.2 97 chr3R 29880589 intron CG31038 + chr3R 29880638 intron CG31038 + chr3R 29880686 intron CG31038 + chr3R_4_29880001 chr3R_29880001 RAL-28 1055 chr3R 29882021 29882050 chr3R 29891177 29891207 roo 5 9157 3.5 1.5 2.5 1.4 9186 chr3R 29882021 intron CG31038 + chr3R 29886614 intron CG31038 + chr3R 29891207 intron CG31038 + chr3R_5_29885001 chr3R_29885001 RAL-28 1056 chr3R 29923608 29923641 chr3R 29925464 29925488 6 1849 4.5 19.5 12.0 0.5 1880 chr3R 29923608 intergenic Jon99Cii -,Jon99Ciii + chr3R 29924548 exon Jon99Cii - chr3R 29925488 exon Jon99Ci - chr3R_6_29920001 chr3R_29920001 RAL-28 1057 chr3R 29963480 29963508 chr3R 29963582 29963607 5 101 0.5 1.0 0.8 2.8 127 chr3R 29963480 intron TkR99D - chr3R 29963544 intron TkR99D - chr3R 29963607 intron TkR99D - chr3R_5_29960001 chr3R_29960001 RAL-28 1058 chr3R 29966057 29966069 chr3R 29966142 29966154 5 84 3.0 3.0 3.0 1.2 97 chr3R 29966057 intron TkR99D - chr3R 29966106 intron TkR99D - chr3R 29966154 intron TkR99D - chr3R_5_29965001 chr3R_29965001 RAL-28 1059 chr3R 30013685 30013705 chr3R 30013760 30013785 4 80 2.0 3.0 2.5 1.1 100 chr3R 30013685 intron CG7920 - chr3R 30013735 intron CG7920 - chr3R 30013785 intron CG7920 - chr3R_4_30010001 chr3R_30010001 RAL-28 1060 chr3R 30084848 30084874 chr3R 30086315 30086341 hobo 4 1467 0.5 4.5 2.5 1.1 1493 chr3R 30084848 intron sima + chr3R 30085594 intron sima + chr3R 30086341 intron sima + chr3R_4_30085001 chr3R_30085001 RAL-28 1061 chr3R 30124961 30124978 chr3R 30125037 30125054 5 76 3.5 3.0 3.2 1.2 93 chr3R 30124961 intergenic CG45073 - chr3R 30125008 intergenic CG45073 - chr3R 30125054 intergenic CG45073 - chr3R_5_30125001 chr3R_30125001 RAL-28 1062 chr3R 30136958 30136973 chr3R 30137029 30137050 6 77 1.0 2.0 1.5 2.4 92 chr3R 30136958 exon AdoR - chr3R 30137004 intron AdoR - chr3R 30137050 intron AdoR - chr3R_6_30135001 chr3R_30135001 RAL-28 1063 chr3R 30262573 30262597 chr3R 30262670 30262694 6 97 3.5 0.5 2.0 2.0 121 chr3R 30262573 intergenic not near genes chr3R 30262634 intergenic not near genes chr3R 30262694 intergenic not near genes chr3R_6_30260001 chr3R_30260001 RAL-28 1064 chr3R 30317334 30317353 chr3R 30324923 30324936 roo 4 7588 1.0 2.5 1.8 1.4 7602 chr3R 30317334 intron hdc + chr3R 30321135 intron hdc + chr3R 30324936 intron hdc + chr3R_4_30320001 chr3R_30320001 RAL-28 1065 chr3R 30364845 30364859 chr3R 30365012 30365032 4 171 2.5 0.0 1.2 1.8 187 chr3R 30364845 3` UTR hdc + chr3R 30364938 3` UTR hdc + chr3R 30365032 3` UTR hdc + chr3R_4_30360001 chr3R_30360001 RAL-28 1066 chr3R 30396228 30396247 chr3R 30404494 30404513 roo 4 8265 4.0 1.5 2.8 1.1 8285 chr3R 30396228 intergenic not near genes chr3R 30400370 intergenic not near genes chr3R 30404513 5` UTR CR45570 + chr3R_4_30400001 chr3R_30400001 RAL-28 1067 chr3R 30440688 30440716 chr3R 30440946 30440975 9 258 4.5 1.0 2.8 2.4 287 chr3R 30440688 intron CG15537 - chr3R 30440832 intron CG15537 - chr3R 30440975 intron CG15537 - chr3R_9_30440001 chr3R_30440001 RAL-28 1068 chr3R 30456398 30456421 chr3R 30456478 30456489 4 77 0.0 2.5 1.2 1.8 91 chr3R 30456398 intergenic CG2224 - chr3R 30456444 3` UTR CG2224 - chr3R 30456489 3` UTR CG2224 - chr3R_4_30455001 chr3R_30455001 RAL-28 1069 chr3R 30458014 30458046 chr3R 30458094 30458125 6 80 0.5 2.5 1.5 2.4 111 chr3R 30458014 intron CG2224 - chr3R 30458070 intron CG2224 - chr3R 30458125 intron CG2224 - chr3R_6_30455001 chr3R_30455001 RAL-28 1070 chr3R 30471912 30471934 chr3R 30471987 30472010 8 74 1.0 3.0 2.0 2.7 98 chr3R 30471912 intron PH4alphaEFB + chr3R 30471961 intron PH4alphaEFB + chr3R 30472010 intron PH4alphaEFB + chr3R_8_30470001 chr3R_30470001 RAL-28 1071 chr3R 30480477 30480509 chr3R 30482945 30482977 jockey 6 2468 3.5 4.5 4.0 1.2 2500 chr3R 30480477 intron PH4alphaEFB + chr3R 30481727 intron PH4alphaEFB + chr3R 30482977 intron PH4alphaEFB + chr3R_6_30480001 chr3R_30480001 RAL-28 1072 chr3R 30495178 30495188 chr3R 30495292 30495308 5 117 1.5 1.5 1.5 2.0 130 chr3R 30495178 intron PH4alphaMP - chr3R 30495243 intron PH4alphaMP - chr3R 30495308 intron PH4alphaMP - chr3R_5_30495001 chr3R_30495001 RAL-28 1073 chr3R 30498405 30498426 chr3R 30498605 30498625 4 200 0.0 1.0 0.5 2.7 220 chr3R 30498405 intron PH4alphaNE1 - chr3R 30498515 intron PH4alphaNE1 - chr3R 30498625 intron PH4alphaNE1 - chr3R_4_30495001 chr3R_30495001 RAL-28 1074 chr3R 30544654 30544686 chr3R 30544734 30544734 6 70 1.5 3.5 2.5 1.7 80 chr3R 30544654 intron tmod + chr3R 30544694 intron tmod + chr3R 30544734 intron tmod + chr3R_6_30540001 chr3R_30540001 RAL-28 1075 chr3R 30551278 30551299 chr3R 30551361 30551380 5 80 1.5 1.0 1.2 2.3 102 chr3R 30551278 intron tmod + chr3R 30551329 intron tmod + chr3R 30551380 intron tmod + chr3R_5_30550001 chr3R_30550001 RAL-28 1076 chr3R 30592503 30592537 chr3R 30592613 30592647 14 108 0.5 2.5 1.5 5.6 144 chr3R 30592503 intergenic CG2246 - chr3R 30592575 intergenic CG2246 - chr3R 30592647 intergenic CG2246 - chr3R_14_30590001 chr3R_30590001 RAL-28 1077 chr3R 30627607 30627623 chr3R 30627687 30627703 9 75 1.5 4.5 3.0 2.2 96 chr3R 30627607 exon CG2267 - chr3R 30627655 exon CG2267 - chr3R 30627703 exon CG2267 - chr3R_9_30625001 chr3R_30625001 RAL-28 1078 chr3R 30627624 30627636 chr3R 30627684 30627715 5 70 1.0 3.5 2.2 1.6 91 chr3R 30627624 exon CG2267 - chr3R 30627670 exon CG2267 - chr3R 30627715 exon CG2267 - chr3R_5_30625001 chr3R_30625001 RAL-28 1079 chr3R 30679546 30679552 chr3R 30686987 30687021 blood 5 7463 2.5 1.5 2.0 1.7 7475 chr3R 30679546 intergenic not near genes chr3R 30683284 intergenic not near genes chr3R 30687021 intergenic not near genes chr3R_5_30680001 chr3R_30680001 RAL-28 1080 chr3R 30690164 30690192 chr3R 30690247 30690274 13 81 3.5 2.0 2.8 3.4 110 chr3R 30690164 intergenic Spn100A + chr3R 30690219 intergenic Spn100A + chr3R 30690274 intergenic Spn100A + chr3R_13_30690001 chr3R_30690001 RAL-28 1081 chr3R 30859413 30859427 chr3R 30859491 30859505 5 78 0.5 0.0 0.2 4.2 92 chr3R 30859413 intergenic not near genes chr3R 30859459 intergenic not near genes chr3R 30859505 intergenic not near genes chr3R_5_30855001 chr3R_30855001 RAL-28 1082 chr3R 31042115 31042128 chr3R 31042202 31042213 5 86 3.0 2.0 2.5 1.4 98 chr3R 31042115 intron CanA1 + chr3R 31042164 intron CanA1 + chr3R 31042213 intron CanA1 + chr3R_5_31040001 chr3R_31040001 RAL-28 1083 chr3R 31067042 31067054 chr3R 31067163 31067181 4 123 2.5 2.5 2.5 1.1 139 chr3R 31067042 intron Sox100B + chr3R 31067112 intron Sox100B + chr3R 31067181 intron Sox100B + chr3R_4_31065001 chr3R_31065001 RAL-28 1084 chr3R 31146749 31146781 chr3R 31146827 31146844 8 72 0.5 0.5 0.5 5.3 95 chr3R 31146749 intron Gycbeta100B + chr3R 31146796 intron Gycbeta100B + chr3R 31146844 intron Gycbeta100B + chr3R_8_31145001 chr3R_31145001 RAL-28 1085 chr3R 31274365 31274395 chr3R 31274442 31274461 6 73 1.5 2.0 1.8 2.1 96 chr3R 31274365 intergenic not near genes chr3R 31274413 intergenic not near genes chr3R 31274461 intergenic not near genes chr3R_6_31270001 chr3R_31270001 RAL-28 1086 chr3R 31279372 31279409 chr3R 31285563 31285600 diver 9 6189 1.5 2.5 2.0 3.0 6228 chr3R 31279372 intergenic not near genes chr3R 31282486 intergenic not near genes chr3R 31285600 intergenic not near genes chr3R_9_31280001 chr3R_31280001 RAL-28 1087 chr3R 31348062 31348091 chr3R 31348139 31348168 8 76 1.0 2.0 1.5 3.2 106 chr3R 31348062 intron CG34347 + chr3R 31348115 intron CG34347 + chr3R 31348168 intron CG34347 + chr3R_8_31345001 chr3R_31345001 RAL-28 1088 chr3R 31412711 31412729 chr3R 31412804 31412821 4 90 3.0 2.5 2.8 1.1 110 chr3R 31412711 intron Gprk2 + chr3R 31412766 intron Gprk2 + chr3R 31412821 intron Gprk2 + chr3R_4_31410001 chr3R_31410001 RAL-28 1089 chr3R 31413099 31413116 chr3R 31418299 31418316 copia 6 5200 2.5 0.5 1.5 2.4 5217 chr3R 31413099 intron Gprk2 + chr3R 31415708 intron Gprk2 + chr3R 31418316 intron Gprk2 + chr3R_6_31415001 chr3R_31415001 RAL-28 1090 chr3R 31426881 31426900 chr3R 31426972 31426992 4 92 1.0 0.5 0.8 2.2 111 chr3R 31426881 intron Gprk2 + chr3R 31426936 intron Gprk2 + chr3R 31426992 intron Gprk2 + chr3R_4_31425001 chr3R_31425001 RAL-28 1091 chr3R 31606141 31606165 chr3R 31606303 31606327 12 160 2.0 0.0 1.0 6.0 186 chr3R 31606141 intron CycG - chr3R 31606234 intron CycG - chr3R 31606327 intron CycG - chr3R_12_31605001 chr3R_31605001 RAL-28 1092 chr3R 31691555 31691561 chr3R 31696303 31696327 Doc 6 4762 2.5 4.0 3.2 1.4 4772 chr3R 31691555 intergenic not near genes chr3R 31693941 intergenic not near genes chr3R 31696327 intergenic not near genes chr3R_6_31690001 chr3R_31690001 RAL-28 1093 chr3R 31726665 31726686 chr3R 31726751 31726771 6 84 1.0 5.5 3.2 1.4 106 chr3R 31726665 intron ttk + chr3R 31726718 intron ttk + chr3R 31726771 intron ttk + chr3R_6_31725001 chr3R_31725001 RAL-28 1094 chr3R 31880295 31880328 chr3R 31880369 31880403 4 75 2.0 2.0 2.0 1.3 108 chr3R 31880295 intron heph - chr3R 31880349 intron heph - chr3R 31880403 intron heph - chr3R_4_31880001 chr3R_31880001 RAL-28 1095 chr3R 31931193 31931213 chr3R 31931276 31931279 4 79 0.5 2.0 1.2 1.8 86 chr3R 31931193 intron heph - chr3R 31931236 intron heph - chr3R 31931279 intron heph - chr3R_4_31930001 chr3R_31930001 RAL-28 1096 chr3R 31953139 31953175 chr3R 31953217 31953253 5 76 0.0 3.0 1.5 2.0 114 chr3R 31953139 intron heph - chr3R 31953196 intron heph - chr3R 31953253 intron heph - chr3R_5_31950001 chr3R_31950001 RAL-28 1097 chr3R 31997991 31998015 chr3R 32005460 32005485 blood 7 7469 2.0 1.0 1.5 2.8 7494 chr3R 31997991 intron heph - chr3R 32001738 intron heph - chr3R 32005485 intron heph - chr3R_7_32000001 chr3R_32000001 RAL-28 1098 chr3R 32013282 32013298 chr3R 32013397 32013416 5 117 2.0 0.0 1.0 2.5 134 chr3R 32013282 intron,5` UTR heph -,CR45556 + chr3R 32013349 intron,5` UTR heph -,CR45556 + chr3R 32013416 intron heph - chr3R_5_32010001 chr3R_32010001 RAL-28 1099 chr4 671610 671635 chr4 680193 680218 Tirant 8 8582 1.5 3.5 2.5 2.3 8608 chr4 671610 intron CG11360 + chr4 675914 intron CG11360 + chr4 680218 intron CG11360 + chr4_8_675001 chr4_675001 RAL-28 1100 chr4 799798 799826 chr4 799887 799916 8 87 3.0 1.5 2.2 2.5 118 chr4 799798 exon CG11231 + chr4 799857 exon CG11231 + chr4 799916 exon CG11231 + chr4_8_795001 chr4_795001 RAL-28 1101 chr4 896784 896817 chr4 896861 896895 6 78 1.0 1.0 1.0 3.0 111 chr4 896784 intron unc-13 - chr4 896840 intron unc-13 - chr4 896895 intron unc-13 - chr4_6_895001 chr4_895001 RAL-28 1102 chr4 905571 905588 chr4 905653 905670 5 81 3.5 2.0 2.8 1.3 99 chr4 905571 5` UTR unc-13 - chr4 905620 5` UTR unc-13 - chr4 905670 5` UTR unc-13 - chr4_5_905001 chr4_905001 RAL-28 1103 chrX 318482 318500 chrX 323568 323584 flea 4 5084 0.5 3.0 1.8 1.4 5102 chrX 318482 intron,intron CG3777 +,CG32816 - chrX 321033 intron,intron CG3777 +,CG32816 - chrX 323584 intron,intron CG3777 +,CG32816 - chrX_4_320001 chrX_320001 RAL-28 1104 chrX 441003 441019 chrX 441081 441096 4 78 4.0 3.5 3.8 0.8 93 chrX 441003 intron CG32816 - chrX 441050 intron CG32816 - chrX 441096 intron CG32816 - chrX_4_440001 chrX_440001 RAL-28 1105 chrX 494608 494632 chrX 494692 494724 5 90 1.5 2.0 1.8 1.8 116 chrX 494608 intergenic CG17778 + chrX 494666 5` UTR CG17778 + chrX 494724 intron CG17778 + chrX_5_490001 chrX_490001 RAL-28 1106 chrX 547637 547656 chrX 547881 547898 4 244 2.0 1.0 1.5 1.6 261 chrX 547637 intron Appl + chrX 547768 intron Appl + chrX 547898 intron Appl + chrX_4_545001 chrX_545001 RAL-28 1107 chrX 551422 551453 chrX 558983 559013 412 11 7559 3.5 1.5 2.5 3.1 7591 chrX 551422 intron Appl + chrX 555218 intron Appl + chrX 559013 intron Appl + chrX_11_555001 chrX_555001 RAL-28 1108 chrX 561585 561588 chrX 561669 561677 4 90 3.0 1.5 2.2 1.2 92 chrX 561585 intron Appl + chrX 561631 intron Appl + chrX 561677 intron Appl + chrX_4_560001 chrX_560001 RAL-28 1109 chrX 667654 667679 chrX 667738 667763 6 82 2.0 2.5 2.2 1.9 109 chrX 667654 intergenic not near genes chrX 667708 intergenic not near genes chrX 667763 intergenic not near genes chrX_6_665001 chrX_665001 RAL-28 1110 chrX 670263 670293 chrX 670343 670370 4 77 0.0 0.5 0.2 3.3 107 chrX 670263 intergenic not near genes chrX 670316 intergenic not near genes chrX 670370 intergenic not near genes chrX_4_670001 chrX_670001 RAL-28 1111 chrX 680848 680871 chrX 680929 680954 7 79 2.0 3.5 2.8 1.8 106 chrX 680848 intergenic not near genes chrX 680901 intergenic not near genes chrX 680954 intergenic not near genes chrX_7_680001 chrX_680001 RAL-28 1112 chrX 778133 778154 chrX 778219 778233 6 86 2.5 0.5 1.5 2.4 100 chrX 778133 intron fz3 + chrX 778183 intron fz3 + chrX 778233 intron fz3 + chrX_6_775001 chrX_775001 RAL-28 1113 chrX 802298 802316 chrX 802375 802393 5 74 1.0 3.5 2.2 1.6 95 chrX 802298 exon CG13359 - chrX 802346 exon CG13359 - chrX 802393 exon CG13359 - chrX_5_800001 chrX_800001 RAL-28 1114 chrX 806792 806818 chrX 806888 806912 10 90 1.5 2.0 1.8 3.6 120 chrX 806792 intron Sec22 + chrX 806852 intron Sec22 + chrX 806912 intron Sec22 + chrX_10_805001 chrX_805001 RAL-28 1115 chrX 827607 827620 chrX 835399 835412 roo 4 7791 2.5 3.0 2.8 1.1 7805 chrX 827607 intron CG43867 - chrX 831510 intron CG43867 - chrX 835412 intron CG43867 - chrX_4_830001 chrX_830001 RAL-28 1116 chrX 1428592 1428623 chrX 1428677 1428708 8 85 1.0 3.0 2.0 2.7 116 chrX 1428592 intron futsch + chrX 1428650 intron futsch + chrX 1428708 intron futsch + chrX_8_1425001 chrX_1425001 RAL-28 1117 chrX 1429617 1429641 chrX 1429695 1429719 4 76 5.5 1.0 3.2 1.0 102 chrX 1429617 intron futsch + chrX 1429668 intron futsch + chrX 1429719 intron futsch + chrX_4_1425001 chrX_1425001 RAL-28 1118 chrX 1494725 1494751 chrX 1494849 1494876 9 124 2.0 2.5 2.2 2.8 151 chrX 1494725 intron,intron inc +,Nmdar2 - chrX 1494800 intron,intron inc +,Nmdar2 - chrX 1494876 intron,intron inc +,Nmdar2 - chrX_9_1490001 chrX_1490001 RAL-28 1119 chrX 1518043 1518062 chrX 1523445 1523464 jockey 5 5401 2.5 2.0 2.2 1.6 5421 chrX 1518043 intergenic inc + chrX 1520754 intergenic not near genes chrX 1523464 intergenic not near genes chrX_5_1520001 chrX_1520001 RAL-28 1120 chrX 1554529 1554543 chrX 1554666 1554696 4 151 10.5 17.5 14.0 0.3 167 chrX 1554529 exon Mur2B - chrX 1554612 intron Mur2B - chrX 1554696 exon Mur2B - chrX_4_1550001 chrX_1550001 RAL-28 1121 chrX 1627979 1628001 chrX 1635447 1635467 gtwin 5 7465 3.5 2.5 3.0 1.2 7488 chrX 1627979 intron,intron Mur2B -,br + chrX 1631723 intron,intron Mur2B -,br + chrX 1635467 intron,intron Mur2B -,br + chrX_5_1630001 chrX_1630001 RAL-28 1122 chrX 1753140 1753162 chrX 1753212 1753240 8 76 1.5 0.5 1.0 4.0 100 chrX 1753140 intron Scgdelta - chrX 1753190 intron Scgdelta - chrX 1753240 intron Scgdelta - chrX_8_1750001 chrX_1750001 RAL-28 1123 chrX 1954895 1954915 chrX 1962827 1962833 Stalker2 5 7926 3.0 1.0 2.0 1.7 7938 chrX 1954895 intron Hr4 + chrX 1958864 intron Hr4 + chrX 1962833 intron Hr4 + chrX_5_1955001 chrX_1955001 RAL-28 1124 chrX 2146653 2146687 chrX 2146745 2146779 8 92 3.0 4.0 3.5 1.8 126 chrX 2146653 intron Pgd + chrX 2146716 intron Pgd + chrX 2146779 intron Pgd + chrX_8_2145001 chrX_2145001 RAL-28 1125 chrX 2387028 2387035 chrX 2387103 2387114 4 78 1.0 5.5 3.2 1.0 86 chrX 2387028 intron PsGEF - chrX 2387071 intron PsGEF - chrX 2387114 intron PsGEF - chrX_4_2385001 chrX_2385001 RAL-28 1126 chrX 2752234 2752254 chrX 2752316 2752335 7 80 3.0 3.5 3.2 1.7 101 chrX 2752234 intron kirre + chrX 2752284 intron kirre + chrX 2752335 intron kirre + chrX_7_2750001 chrX_2750001 RAL-28 1127 chrX 3031158 3031189 chrX 3031239 3031272 6 76 0.5 0.0 0.2 5.0 114 chrX 3031158 intron kirre + chrX 3031215 intron kirre + chrX 3031272 intron kirre + chrX_6_3030001 chrX_3030001 RAL-28 1128 chrX 3058024 3058050 chrX 3058260 3058291 pogo 5 238 1.0 2.0 1.5 2.0 267 chrX 3058024 intron kirre + chrX 3058158 intron kirre + chrX 3058291 intron kirre + chrX_5_3055001 chrX_3055001 RAL-28 1129 chrX 3109447 3109469 chrX 3109524 3109546 4 77 0.5 1.0 0.8 2.2 99 chrX 3109447 intron kirre + chrX 3109496 intron kirre + chrX 3109546 intron kirre + chrX_4_3105001 chrX_3105001 RAL-28 1130 chrX 3188451 3188460 chrX 3188606 3188614 4 155 1.5 1.0 1.2 1.8 163 chrX 3188451 intron dnc + chrX 3188532 intron dnc + chrX 3188614 intron dnc + chrX_4_3185001 chrX_3185001 RAL-28 1131 chrX 3247443 3247464 chrX 3247524 3247545 4 81 0.0 1.0 0.5 2.7 102 chrX 3247443 intron dnc + chrX 3247494 intron dnc + chrX 3247545 intron dnc + chrX_4_3245001 chrX_3245001 RAL-28 1132 chrX 3481742 3481764 chrX 3481818 3481840 4 76 1.0 1.5 1.2 1.8 98 chrX 3481742 intron,intron CR44999 +,CG10804 - chrX 3481791 intron,intron CR44999 +,CG10804 - chrX 3481840 intron,intron CR44999 +,CG10804 - chrX_4_3480001 chrX_3480001 RAL-28 1133 chrX 3493091 3493112 chrX 3502250 3502271 roo 5 9159 1.5 2.0 1.8 1.8 9180 chrX 3493091 intron,intron CR44999 +,Gas8 - chrX 3497681 intron,intron CR44999 +,Gas8 - chrX 3502271 intron,intron CR44999 +,Gas8 - chrX_5_3495001 chrX_3495001 RAL-28 1134 chrX 3597549 3597579 chrX 3619717 3619747 roo 8 22168 2.0 2.5 2.2 2.5 22198 chrX 3597549 intron AstA-R1 + chrX 3608648 intron AstA-R1 + chrX 3619747 intron AstA-R1 + chrX_8_3605001 chrX_3605001 RAL-28 1135 chrX 3657419 3657426 chrX 3657499 3657506 4 79 4.0 1.0 2.5 1.1 87 chrX 3657419 intron AstA-R1 + chrX 3657462 intron AstA-R1 + chrX 3657506 intron AstA-R1 + chrX_4_3655001 chrX_3655001 RAL-28 1136 chrX 3657428 3657446 chrX 3657492 3657526 5 73 1.5 1.0 1.2 2.3 98 chrX 3657428 intron AstA-R1 + chrX 3657477 intron AstA-R1 + chrX 3657526 intron AstA-R1 + chrX_5_3655001 chrX_3655001 RAL-28 1137 chrX 3866109 3866128 chrX 3866184 3866201 5 76 0.5 0.5 0.5 3.3 92 chrX 3866109 intron yin - chrX 3866155 intron yin - chrX 3866201 intron yin - chrX_5_3865001 chrX_3865001 RAL-28 1138 chrX 3881269 3881302 chrX 3881408 3881441 8 139 3.0 1.0 2.0 2.7 172 chrX 3881269 intron VhaAC39-1 + chrX 3881355 intron VhaAC39-1 + chrX 3881441 intron VhaAC39-1 + chrX_8_3880001 chrX_3880001 RAL-28 1139 chrX 3986866 3986891 chrX 3994498 3994524 412 6 7630 4.0 0.0 2.0 2.0 7658 chrX 3986866 intergenic not near genes chrX 3990695 intergenic not near genes chrX 3994524 intergenic not near genes chrX_6_3990001 chrX_3990001 RAL-28 1140 chrX 4029532 4029560 chrX 4029722 4029737 4 187 0.0 0.0 0.0 4.0 205 chrX 4029532 intergenic not near genes chrX 4029634 intergenic not near genes chrX 4029737 intergenic not near genes chrX_4_4025001 chrX_4025001 RAL-28 1141 chrX 4515839 4515859 chrX 4515917 4515937 5 77 0.0 4.5 2.2 1.6 98 chrX 4515839 intron CR32773 - chrX 4515888 intron CR32773 - chrX 4515937 intron CR32773 - chrX_5_4515001 chrX_4515001 RAL-28 1142 chrX 4525756 4525771 chrX 4525848 4525863 5 92 2.0 1.0 1.5 2.0 107 chrX 4525756 intron CR32773 - chrX 4525810 intron CR32773 - chrX 4525863 intron CR32773 - chrX_5_4525001 chrX_4525001 RAL-28 1143 chrX 4557835 4557858 chrX 4557911 4557926 4 72 1.0 1.5 1.2 1.8 91 chrX 4557835 intron CR32773 - chrX 4557880 intron CR32773 - chrX 4557926 intron CR32773 - chrX_4_4555001 chrX_4555001 RAL-28 1144 chrX 4638651 4638666 chrX 4638788 4638803 4 137 0.0 2.0 1.0 2.0 152 chrX 4638651 exon pon + chrX 4638727 3` UTR pon + chrX 4638803 3` UTR pon + chrX_4_4635001 chrX_4635001 RAL-28 1145 chrX 4763250 4763284 chrX 4763738 4763772 Stalker4 10 485 1.0 2.5 1.8 3.6 522 chrX 4763250 intergenic not near genes chrX 4763511 intergenic not near genes chrX 4763772 intergenic not near genes chrX_10_4760001 chrX_4760001 RAL-28 1146 chrX 4792388 4792407 chrX 4792821 4792840 jockey 4 433 0.5 1.5 1.0 2.0 452 chrX 4792388 intergenic not near genes chrX 4792614 intergenic not near genes chrX 4792840 intergenic not near genes chrX_4_4790001 chrX_4790001 RAL-28 1147 chrX 4814496 4814524 chrX 4814577 4814600 4 79 0.0 0.0 0.0 4.0 104 chrX 4814496 intergenic not near genes chrX 4814548 intergenic not near genes chrX 4814600 intergenic not near genes chrX_4_4810001 chrX_4810001 RAL-28 1148 chrX 4827973 4827999 chrX 4835337 4835355 Stalker4 6 7359 2.0 1.5 1.8 2.1 7382 chrX 4827973 intergenic not near genes chrX 4831664 intergenic not near genes chrX 4835355 intergenic not near genes chrX_6_4830001 chrX_4830001 RAL-28 1149 chrX 4885799 4885808 chrX 4885869 4885899 7 84 1.0 1.0 1.0 3.5 100 chrX 4885799 intron CG42594 + chrX 4885849 intron CG42594 + chrX 4885899 intron CG42594 + chrX_7_4885001 chrX_4885001 RAL-28 1150 chrX 4990042 4990074 chrX 4997256 4997288 roo 5 7214 0.5 0.0 0.2 4.2 7246 chrX 4990042 intron CR44833 - chrX 4993665 intron CR44833 - chrX 4997288 intron CR44833 - chrX_5_4990001 chrX_4990001 RAL-28 1151 chrX 5096281 5096292 chrX 5103846 5103856 springer 4 7564 4.0 3.5 3.8 0.8 7575 chrX 5096281 intron,intron CG15465 +,rg + chrX 5100068 intron,intron CG15465 +,rg + chrX 5103856 intron,intron CG15465 +,rg + chrX_4_5100001 chrX_5100001 RAL-28 1152 chrX 5206304 5206333 chrX 5206577 5206606 9 273 0.5 1.0 0.8 5.0 302 chrX 5206304 intron,intron CG15465 +,rg + chrX 5206455 intron,intron CG15465 +,rg + chrX 5206606 intron,intron CG15465 +,rg + chrX_9_5205001 chrX_5205001 RAL-28 1153 chrX 5338710 5338717 chrX 5339958 5339969 jockey 4 1251 3.0 0.5 1.8 1.4 1259 chrX 5338710 intergenic not near genes chrX 5339340 intergenic not near genes chrX 5339969 intergenic SK + chrX_4_5335001 chrX_5335001 RAL-28 1154 chrX 5366306 5366330 chrX 5366434 5366457 6 126 1.0 0.0 0.5 4.0 151 chrX 5366306 intron SK + chrX 5366382 intron SK + chrX 5366457 intron SK + chrX_6_5365001 chrX_5365001 RAL-28 1155 chrX 5798870 5798887 chrX 5799030 5799049 7 160 1.0 4.0 2.5 2.0 179 chrX 5798870 intergenic not near genes chrX 5798960 intergenic not near genes chrX 5799049 intergenic not near genes chrX_7_5795001 chrX_5795001 RAL-28 1156 chrX 5883818 5883829 chrX 5884058 5884070 pogo 6 240 0.5 1.5 1.0 3.0 252 chrX 5883818 intron CR45668 - chrX 5883944 intron CR45668 - chrX 5884070 intron CR45668 - chrX_6_5880001 chrX_5880001 RAL-28 1157 chrX 5884160 5884191 chrX 5884401 5884431 pogo 8 240 1.5 1.0 1.2 3.6 271 chrX 5884160 intron CR45668 - chrX 5884296 intron CR45668 - chrX 5884431 intron CR45668 - chrX_8_5880001 chrX_5880001 RAL-28 1158 chrX 6171588 6171608 chrX 6179021 6179040 Quasimodo 13 7430 1.5 3.0 2.2 4.1 7452 chrX 6171588 intron Ca-alpha1T - chrX 6175314 intron Ca-alpha1T - chrX 6179040 intron Ca-alpha1T - chrX_13_6175001 chrX_6175001 RAL-28 1159 chrX 6335216 6335244 chrX 6337725 6337754 Tirant 6 2510 0.0 0.5 0.2 5.0 2538 chrX 6335216 intergenic not near genes chrX 6336485 intergenic not near genes chrX 6337754 intergenic CG3842 + chrX_6_6335001 chrX_6335001 RAL-28 1160 chrX 6392872 6392900 chrX 6397637 6397664 Doc 6 4764 3.0 4.0 3.5 1.3 4792 chrX 6392872 intergenic not near genes chrX 6395268 intergenic not near genes chrX 6397664 intergenic not near genes chrX_6_6395001 chrX_6395001 RAL-28 1161 chrX 6562818 6562848 chrX 6571299 6571329 Tirant 8 8480 2.5 4.0 3.2 1.9 8511 chrX 6562818 intron CG34417 + chrX 6567074 intron CG34417 + chrX 6571329 intron CG34417 + chrX_8_6565001 chrX_6565001 RAL-28 1162 chrX 6730968 6730990 chrX 6731345 6731356 9 375 1.0 2.0 1.5 3.6 388 chrX 6730968 intron CG3168 - chrX 6731162 intron CG3168 - chrX 6731356 intron CG3168 - chrX_9_6730001 chrX_6730001 RAL-28 1163 chrX 6737524 6737549 chrX 6737602 6737631 9 81 2.0 1.0 1.5 3.6 107 chrX 6737524 intron CG3168 - chrX 6737578 intron CG3168 - chrX 6737631 intron CG3168 - chrX_9_6735001 chrX_6735001 RAL-28 1164 chrX 7023606 7023633 chrX 7030996 7031023 Tabor 5 7390 3.0 0.5 1.8 1.8 7417 chrX 7023606 intron CG12541 - chrX 7027314 intron CG12541 - chrX 7031023 intron CG12541 - chrX_5_7025001 chrX_7025001 RAL-28 1165 chrX 7125255 7125278 chrX 7134414 7134437 roo 6 9158 0.5 3.5 2.0 2.0 9182 chrX 7125255 intergenic not near genes chrX 7129846 intergenic not near genes chrX 7134437 intergenic not near genes chrX_6_7125001 chrX_7125001 RAL-28 1166 chrX 7294534 7294537 chrX 7294616 7294635 4 94 1.0 3.0 2.0 1.3 101 chrX 7294534 intron,intron CR44357 -,CG1677 - chrX 7294584 intron,intron CR44357 -,CG1677 - chrX 7294635 intron,intron CR44357 -,CG1677 - chrX_4_7290001 chrX_7290001 RAL-28 1167 chrX 7702918 7702927 chrX 7703357 7703364 jockey 4 438 1.5 1.0 1.2 1.8 446 chrX 7702918 intron CHES-1-like - chrX 7703141 intron CHES-1-like - chrX 7703364 intron CHES-1-like - chrX_4_7700001 chrX_7700001 RAL-28 1168 chrX 7784234 7784242 chrX 7784536 7784544 jockey 5 302 2.5 3.5 3.0 1.2 310 chrX 7784234 intergenic not near genes chrX 7784389 intergenic not near genes chrX 7784544 intergenic not near genes chrX_5_7780001 chrX_7780001 RAL-28 1169 chrX 7832442 7832456 chrX 7832530 7832545 4 89 1.5 0.0 0.8 2.2 103 chrX 7832442 intron CG1402 + chrX 7832494 intron CG1402 + chrX 7832545 intron CG1402 + chrX_4_7830001 chrX_7830001 RAL-28 1170 chrX 8031446 8031456 chrX 8035755 8035758 Juan 4 4307 1.0 1.0 1.0 2.0 4312 chrX 8031446 intergenic not near genes chrX 8033602 intergenic not near genes chrX 8035758 3` UTR CG2233 - chrX_4_8030001 chrX_8030001 RAL-28 1171 chrX 8214402 8214438 chrX 8214494 8214530 6 92 3.0 3.0 3.0 1.5 128 chrX 8214402 intron sdt + chrX 8214466 intron sdt + chrX 8214530 intron sdt + chrX_6_8210001 chrX_8210001 RAL-28 1172 chrX 8304994 8305013 chrX 8305119 8305139 6 125 1.0 4.5 2.8 1.6 145 chrX 8304994 intron nAChRalpha3 - chrX 8305066 intron nAChRalpha3 - chrX 8305139 intron nAChRalpha3 - chrX_6_8305001 chrX_8305001 RAL-28 1173 chrX 8421462 8421492 chrX 8421554 8421584 5 92 0.5 1.0 0.8 2.8 122 chrX 8421462 intron Trf2 + chrX 8421523 intron Trf2 + chrX 8421584 intron Trf2 + chrX_5_8420001 chrX_8420001 RAL-28 1174 chrX 8654258 8654281 chrX 8654336 8654358 5 77 1.0 0.0 0.5 3.3 100 chrX 8654258 intergenic not near genes chrX 8654308 intergenic not near genes chrX 8654358 intergenic not near genes chrX_5_8650001 chrX_8650001 RAL-28 1175 chrX 8922332 8922363 chrX 8922766 8922797 jockey 7 431 3.0 1.0 2.0 2.3 465 chrX 8922332 intron rdgA + chrX 8922564 intron rdgA + chrX 8922797 intron rdgA + chrX_7_8920001 chrX_8920001 RAL-28 1176 chrX 8948762 8948770 chrX 8956272 8956280 roo 4 7510 0.5 1.0 0.8 2.2 7518 chrX 8948762 intron rdgA + chrX 8952521 intron rdgA + chrX 8956280 intron rdgA + chrX_4_8950001 chrX_8950001 RAL-28 1177 chrX 9229904 9229939 chrX 9229983 9230019 6 80 0.5 0.0 0.2 5.0 115 chrX 9229904 intron CG12121 - chrX 9229962 intron CG12121 - chrX 9230019 intron CG12121 - chrX_6_9225001 chrX_9225001 RAL-28 1178 chrX 9315419 9315439 chrX 9315519 9315536 7 98 0.0 0.5 0.2 5.8 117 chrX 9315419 intergenic CR44534 + chrX 9315478 intergenic CR44534 + chrX 9315536 intergenic CR44534 + chrX_7_9315001 chrX_9315001 RAL-28 1179 chrX 9508134 9508165 chrX 9509652 9509681 jockey 8 1516 1.0 1.5 1.2 3.6 1547 chrX 9508134 intron CG32700 - chrX 9508908 intron CG32700 - chrX 9509681 intron CG32700 - chrX_8_9505001 chrX_9505001 RAL-28 1180 chrX 9575799 9575823 chrX 9576122 9576147 mdg3 8 324 1.0 2.5 1.8 2.9 348 chrX 9575799 intron,exon CG32699 -,CG42395 - chrX 9575973 intron,intron CG32699 -,CG42395 - chrX 9576147 intron,5` UTR CG32699 -,CG42395 - chrX_8_9575001 chrX_9575001 RAL-28 1181 chrX 10367189 10367203 chrX 10367298 10367310 4 108 2.5 3.5 3.0 1.0 121 chrX 10367189 exon CG32679 - chrX 10367250 intron CG32679 - chrX 10367310 intron CG32679 - chrX_4_10365001 chrX_10365001 RAL-28 1182 chrX 10550855 10550879 chrX 10552321 10552345 hobo 7 1466 3.5 1.5 2.5 2.0 1490 chrX 10550855 intron spri - chrX 10551600 intron spri - chrX 10552345 intron spri - chrX_7_10550001 chrX_10550001 RAL-28 1183 chrX 10686051 10686075 chrX 10691188 10691212 roo 6 5136 1.0 2.5 1.8 2.1 5161 chrX 10686051 intron X11Lbeta + chrX 10688632 intron X11Lbeta + chrX 10691212 intron X11Lbeta + chrX_6_10685001 chrX_10685001 RAL-28 1184 chrX 10772680 10772695 chrX 10772762 10772778 Tirant 5 82 2.5 1.0 1.8 1.8 98 chrX 10772680 intron CG15211 + chrX 10772729 intron CG15211 + chrX 10772778 intron CG15211 + chrX_5_10770001 chrX_10770001 RAL-28 1185 chrX 10979156 10979175 chrX 10979243 10979262 9 87 1.5 3.0 2.2 2.8 106 chrX 10979156 intron CG42339 - chrX 10979209 intron CG42339 - chrX 10979262 intron CG42339 - chrX_9_10975001 chrX_10975001 RAL-28 1186 chrX 11205302 11205318 chrX 11205378 11205394 4 76 1.0 1.0 1.0 2.0 92 chrX 11205302 intergenic not near genes chrX 11205348 intergenic not near genes chrX 11205394 intergenic not near genes chrX_4_11205001 chrX_11205001 RAL-28 1187 chrX 11312065 11312094 chrX 11319415 11319447 Stalker2 4 7350 0.5 0.5 0.5 2.7 7382 chrX 11312065 intergenic not near genes chrX 11315756 intergenic not near genes chrX 11319447 intergenic not near genes chrX_4_11315001 chrX_11315001 RAL-28 1188 chrX 11633422 11633444 chrX 11640475 11640497 297 4 7053 2.5 2.0 2.2 1.2 7075 chrX 11633422 intron Ptp10D + chrX 11636960 intron Ptp10D + chrX 11640497 intron Ptp10D + chrX_4_11635001 chrX_11635001 RAL-28 1189 chrX 12301964 12301984 chrX 12303270 12303290 X-element 7 1305 2.0 2.0 2.0 2.3 1326 chrX 12301964 intron Ten-a + chrX 12302627 intron Ten-a + chrX 12303290 intron Ten-a + chrX_7_12300001 chrX_12300001 RAL-28 1190 chrX 12350781 12350805 chrX 12350862 12350886 5 80 2.0 0.0 1.0 2.5 105 chrX 12350781 intergenic not near genes chrX 12350834 intergenic not near genes chrX 12350886 intergenic not near genes chrX_5_12350001 chrX_12350001 RAL-28 1191 chrX 12375493 12375503 chrX 12375590 12375600 5 98 1.5 1.0 1.2 2.3 107 chrX 12375493 intergenic Ir11a - chrX 12375546 intergenic Ir11a - chrX 12375600 exon Ir11a - chrX_5_12375001 chrX_12375001 RAL-28 1192 chrX 12842318 12842352 chrX 12842443 12842476 8 122 1.0 3.0 2.0 2.7 158 chrX 12842318 intron Pde9 - chrX 12842397 intron Pde9 - chrX 12842476 intron Pde9 - chrX_8_12840001 chrX_12840001 RAL-28 1193 chrX 13061355 13061364 chrX 13061465 13061475 5 111 3.5 1.0 2.2 1.6 120 chrX 13061355 intron rad + chrX 13061415 intron rad + chrX 13061475 intron rad + chrX_5_13060001 chrX_13060001 RAL-28 1194 chrX 13161690 13161725 chrX 13161767 13161794 4 75 0.5 1.0 0.8 2.2 104 chrX 13161690 3` UTR CG12096 + chrX 13161742 3` UTR,3` UTR CG12096 +,CG34411 - chrX 13161794 3` UTR,3` UTR CG12096 +,CG34411 - chrX_4_13160001 chrX_13160001 RAL-28 1195 chrX 14105041 14105056 chrX 14114171 14114205 roo 4 9142 1.5 3.0 2.2 1.2 9164 chrX 14105041 intergenic not near genes chrX 14109623 intergenic not near genes chrX 14114205 5` UTR CR44657 + chrX_4_14105001 chrX_14105001 RAL-28 1196 chrX 14131495 14131508 chrX 14131573 14131574 6 78 2.5 2.0 2.2 1.9 79 chrX 14131495 intergenic not near genes chrX 14131534 intergenic not near genes chrX 14131574 intergenic not near genes chrX_6_14130001 chrX_14130001 RAL-28 1197 chrX 14189884 14189894 chrX 14189975 14189988 4 92 0.0 3.5 1.8 1.4 104 chrX 14189884 exon CG11585 + chrX 14189936 exon CG11585 + chrX 14189988 exon CG11585 + chrX_4_14185001 chrX_14185001 RAL-28 1198 chrX 14548359 14548383 chrX 14548448 14548473 5 90 1.0 1.5 1.2 2.3 114 chrX 14548359 intergenic not near genes chrX 14548416 intergenic not near genes chrX 14548473 intergenic not near genes chrX_5_14545001 chrX_14545001 RAL-28 1199 chrX 14636463 14636486 chrX 14641904 14641927 I-element 5 5439 1.5 2.0 1.8 1.8 5464 chrX 14636463 intron NetA - chrX 14639195 intron NetA - chrX 14641927 intron NetA - chrX_5_14635001 chrX_14635001 RAL-28 1200 chrX 14818765 14818794 chrX 14823968 14823991 copia 5 5199 2.0 2.0 2.0 1.7 5226 chrX 14818765 intron rut - chrX 14821378 intron rut - chrX 14823991 intron rut - chrX_5_14820001 chrX_14820001 RAL-28 1201 chrX 14981705 14981738 chrX 14981784 14981817 5 79 1.5 0.0 0.8 2.8 112 chrX 14981705 intron eag + chrX 14981761 intron eag + chrX 14981817 intron eag + chrX_5_14980001 chrX_14980001 RAL-28 1202 chrX 15678047 15678068 chrX 15678114 15678145 9 73 0.5 1.5 1.0 4.5 98 chrX 15678047 intergenic CG12708 + chrX 15678096 intergenic CG12708 + chrX 15678145 intergenic CG12708 + chrX_9_15675001 chrX_15675001 RAL-28 1203 chrX 16140724 16140751 chrX 16140890 16140917 5 161 1.5 2.0 1.8 1.8 193 chrX 16140724 intron disco-r - chrX 16140820 intron disco-r - chrX 16140917 intron disco-r - chrX_5_16140001 chrX_16140001 RAL-28 1204 chrX 16218592 16218613 chrX 16218907 16218930 4 316 2.5 0.0 1.2 1.8 338 chrX 16218592 intergenic not near genes chrX 16218761 intergenic not near genes chrX 16218930 intergenic not near genes chrX_4_16215001 chrX_16215001 RAL-28 1205 chrX 16329434 16329446 chrX 16329517 16329517 5 80 0.0 5.0 2.5 1.4 83 chrX 16329434 intron CG9919 - chrX 16329476 intron CG9919 - chrX 16329517 exon CG9919 - chrX_5_16325001 chrX_16325001 RAL-28 1206 chrX 16492659 16492677 chrX 16498236 16498252 mdg3 4 5576 5.0 1.0 3.0 1.0 5593 chrX 16492659 intron para - chrX 16495456 intron para - chrX 16498252 intron para - chrX_4_16495001 chrX_16495001 RAL-28 1207 chrX 17262188 17262197 chrX 17262273 17262283 5 85 1.0 3.0 2.0 1.7 95 chrX 17262188 intron f + chrX 17262236 intron f + chrX 17262283 intron f + chrX_5_17260001 chrX_17260001 RAL-28 1208 chrX 17435764 17435785 chrX 17435839 17435861 4 76 2.0 2.0 2.0 1.3 97 chrX 17435764 intron CG12994 - chrX 17435812 intron CG12994 - chrX 17435861 intron CG12994 - chrX_4_17435001 chrX_17435001 RAL-28 1209 chrX 17502349 17502370 chrX 17502429 17502450 4 79 0.5 2.5 1.5 1.6 101 chrX 17502349 intron CG43658 - chrX 17502400 intron CG43658 - chrX 17502450 intron CG43658 - chrX_4_17500001 chrX_17500001 RAL-28 1210 chrX 17545010 17545033 chrX 17545092 17545114 4 81 1.0 3.0 2.0 1.3 104 chrX 17545010 intron CG43658 - chrX 17545062 intron CG43658 - chrX 17545114 intron CG43658 - chrX_4_17545001 chrX_17545001 RAL-28 1211 chrX 17680890 17680921 chrX 17680967 17680998 7 77 1.0 3.5 2.2 2.2 108 chrX 17680890 intron chas - chrX 17680944 intron chas - chrX 17680998 intron chas - chrX_7_17680001 chrX_17680001 RAL-28 1212 chrX 17911852 17911872 chrX 17911939 17911960 4 88 0.5 2.0 1.2 1.8 108 chrX 17911852 intron CG6847 + chrX 17911906 intron CG6847 + chrX 17911960 intron CG6847 + chrX_4_17910001 chrX_17910001 RAL-28 1213 chrX 17946794 17946814 chrX 17946890 17946910 4 95 2.5 1.5 2.0 1.3 116 chrX 17946794 intron Sh - chrX 17946852 intron Sh - chrX 17946910 intron Sh - chrX_4_17945001 chrX_17945001 RAL-28 1214 chrX 17994900 17994905 chrX 17994980 17994985 4 80 2.0 3.0 2.5 1.1 85 chrX 17994900 intron Sh - chrX 17994942 intron Sh - chrX 17994985 intron Sh - chrX_4_17990001 chrX_17990001 RAL-28 1215 chrX 18194067 18194094 chrX 18194602 18194628 BS 5 535 0.5 0.0 0.2 4.2 561 chrX 18194067 intron Frq2 + chrX 18194348 intron Frq2 + chrX 18194628 intron Frq2 + chrX_5_18190001 chrX_18190001 RAL-28 1216 chrX 18467227 18467252 chrX 18467390 18467414 7 161 1.5 3.0 2.2 2.2 187 chrX 18467227 intron CG32547 - chrX 18467320 intron CG32547 - chrX 18467414 intron CG32547 - chrX_7_18465001 chrX_18465001 RAL-28 1217 chrX 18474322 18474339 chrX 18474405 18474407 4 79 2.0 1.0 1.5 1.6 85 chrX 18474322 intron CG32547 - chrX 18474364 intron CG32547 - chrX 18474407 intron CG32547 - chrX_4_18470001 chrX_18470001 RAL-28 1218 chrX 18645014 18645045 chrX 18645112 18645143 7 98 1.5 1.5 1.5 2.8 129 chrX 18645014 intron Rip11 - chrX 18645078 intron Rip11 - chrX 18645143 intron Rip11 - chrX_7_18645001 chrX_18645001 RAL-28 1219 chrX 18749878 18749897 chrX 18749961 18749981 7 84 0.5 1.0 0.8 3.9 103 chrX 18749878 intergenic not near genes chrX 18749930 intergenic not near genes chrX 18749981 intergenic not near genes chrX_7_18745001 chrX_18745001 RAL-28 1220 chrX 18896912 18896938 chrX 18896988 18897015 6 77 2.5 0.5 1.5 2.4 103 chrX 18896912 intergenic CG7349 + chrX 18896964 intergenic CG7349 + chrX 18897015 intergenic CG7349 + chrX_6_18895001 chrX_18895001 RAL-28 1221 chrX 18947505 18947533 chrX 18947598 18947626 5 92 2.0 2.0 2.0 1.7 121 chrX 18947505 intron CG43759 + chrX 18947566 intron CG43759 + chrX 18947626 intron CG43759 + chrX_5_18945001 chrX_18945001 RAL-28 1222 chrX 19048220 19048259 chrX 19048310 19048349 4 88 1.5 0.0 0.8 2.2 129 chrX 19048220 intergenic not near genes chrX 19048284 intergenic not near genes chrX 19048349 intergenic not near genes chrX_4_19045001 chrX_19045001 RAL-28 1223 chrX 19060410 19060435 chrX 19065194 19065219 Doc 6 4784 2.5 1.5 2.0 2.0 4809 chrX 19060410 intron CG14190 + chrX 19062814 intron CG14190 + chrX 19065219 intron CG14190 + chrX_6_19060001 chrX_19060001 RAL-28 1224 chrX 19080327 19080358 chrX 19080433 19080464 7 106 1.5 1.0 1.2 3.2 137 chrX 19080327 intergenic not near genes chrX 19080396 intergenic not near genes chrX 19080464 intergenic not near genes chrX_7_19080001 chrX_19080001 RAL-28 1225 chrX 19084106 19084114 chrX 19084226 19084234 5 120 0.0 0.5 0.2 4.2 128 chrX 19084106 intergenic CR45503 + chrX 19084170 intergenic CR45503 + chrX 19084234 intergenic CR45503 + chrX_5_19080001 chrX_19080001 RAL-28 1226 chrX 19109109 19109136 chrX 19109293 19109307 5 181 0.0 1.5 0.8 2.8 198 chrX 19109109 intergenic not near genes chrX 19109208 intergenic not near genes chrX 19109307 intergenic not near genes chrX_5_19105001 chrX_19105001 RAL-28 1227 chrX 19125703 19125721 chrX 19125831 19125850 4 128 1.0 1.0 1.0 2.0 147 chrX 19125703 intron tgy - chrX 19125776 intron tgy - chrX 19125850 intron tgy - chrX_4_19125001 chrX_19125001 RAL-28 1228 chrX 19170594 19170600 chrX 19170671 19170677 4 77 2.5 6.5 4.5 0.7 83 chrX 19170594 5` UTR Inx5 - chrX 19170636 5` UTR Inx5 - chrX 19170677 5` UTR Inx5 - chrX_4_19170001 chrX_19170001 RAL-28 1229 chrX 19187516 19187542 chrX 19187598 19187623 6 78 1.0 3.5 2.2 1.9 107 chrX 19187516 intergenic CG33253 + chrX 19187570 intergenic CG33253 +,Mec2 + chrX 19187623 intergenic CG33253 +,Mec2 + chrX_6_19185001 chrX_19185001 RAL-28 1230 chrX 13057298 13057300 chrX 19242813 19242814 8 6185514 3.0 5.5 4.2 1.5 6185516 chrX 13057298 intron rad + chrX 16150056 intergenic not near genes chrX 19242814 intergenic not near genes chrX_8_16150001 chrX_16150001 RAL-28 1231 chrX 19380168 19380188 chrX 19380408 19380429 pogo 5 241 2.0 1.5 1.8 1.8 261 chrX 19380168 intron kek5 + chrX 19380298 intron kek5 + chrX 19380429 intron kek5 + chrX_5_19380001 chrX_19380001 RAL-28 1232 chrX 19472127 19472154 chrX 19472697 19472720 jockey 5 565 1.5 1.5 1.5 2.0 593 chrX 19472127 intergenic kek5 + chrX 19472424 intergenic not near genes chrX 19472720 intergenic not near genes chrX_5_19470001 chrX_19470001 RAL-28 1233 chrX 19662030 19662047 chrX 19662253 19662270 7 223 1.5 1.0 1.2 3.2 240 chrX 19662030 intron CG14223 - chrX 19662150 intron CG14223 - chrX 19662270 intron CG14223 - chrX_7_19660001 chrX_19660001 RAL-28 1234 chrX 19710071 19710100 chrX 19711857 19711886 S-element 13 1786 2.0 2.5 2.2 4.1 1815 chrX 19710071 intron meso18E - chrX 19710978 intron meso18E - chrX 19711886 intron meso18E - chrX_13_19710001 chrX_19710001 RAL-28 1235 chrX 19755525 19755556 chrX 19755610 19755641 6 81 1.0 0.5 0.8 3.3 116 chrX 19755525 intron Pmp70 + chrX 19755583 intron Pmp70 + chrX 19755641 intron Pmp70 + chrX_6_19755001 chrX_19755001 RAL-28 1236 chrX 19849817 19849843 chrX 19850136 19850160 4 319 1.0 1.5 1.2 1.8 343 chrX 19849817 intron pico - chrX 19849988 intron pico - chrX 19850160 intron pico - chrX_4_19845001 chrX_19845001 RAL-28 1237 chrX 19881459 19881483 chrX 19881539 19881564 4 81 1.0 0.0 0.5 2.7 105 chrX 19881459 intron Hers + chrX 19881512 intron Hers + chrX 19881564 intron Hers + chrX_4_19880001 chrX_19880001 RAL-28 1238 chrX 20007990 20007998 chrX 20008088 20008096 5 98 3.0 0.0 1.5 2.0 106 chrX 20007990 intron Dop2R - chrX 20008043 intron Dop2R - chrX 20008096 intron Dop2R - chrX_5_20005001 chrX_20005001 RAL-28 1239 chrX 20041533 20041566 chrX 20041613 20041645 5 76 0.5 1.5 1.0 2.5 112 chrX 20041533 intron Dop2R - chrX 20041589 intron Dop2R - chrX 20041645 intron Dop2R - chrX_5_20040001 chrX_20040001 RAL-28 1240 chrX 20122543 20122556 chrX 20122653 20122664 4 109 4.0 3.0 3.5 0.9 121 chrX 20122543 exon CG34331 + chrX 20122604 exon CG34331 + chrX 20122664 exon CG34331 + chrX_4_20120001 chrX_20120001 RAL-28 1241 chrX 20312881 20312899 chrX 20312959 20312977 6 78 2.0 1.0 1.5 2.4 96 chrX 20312881 intron CG1504 - chrX 20312929 intron CG1504 - chrX 20312977 intron CG1504 - chrX_6_20310001 chrX_20310001 RAL-28 1242 chrX 20359152 20359167 chrX 20359230 20359244 5 77 0.5 1.0 0.8 2.8 92 chrX 20359152 intergenic not near genes chrX 20359198 intergenic not near genes chrX 20359244 intergenic not near genes chrX_5_20355001 chrX_20355001 RAL-28 1243 chrX 20374092 20374117 chrX 20374168 20374193 4 76 2.0 0.0 1.0 2.0 101 chrX 20374092 intergenic not near genes chrX 20374142 intergenic not near genes chrX 20374193 intergenic not near genes chrX_4_20370001 chrX_20370001 RAL-28 1244 chrX 20504138 20504155 chrX 20505647 20505660 transib2 4 1510 0.5 1.5 1.0 2.0 1522 chrX 20504138 intron RhoGAP19D - chrX 20504899 intron RhoGAP19D - chrX 20505660 intron RhoGAP19D - chrX_4_20500001 chrX_20500001 RAL-28 1245 chrX 20528599 20528629 chrX 20528947 20528977 4 348 1.0 0.5 0.8 2.2 378 chrX 20528599 intergenic not near genes chrX 20528788 intergenic not near genes chrX 20528977 intergenic not near genes chrX_4_20525001 chrX_20525001 RAL-28 1246 chrX 20578075 20578110 chrX 20578154 20578189 5 79 0.5 2.0 1.2 2.3 114 chrX 20578075 intergenic not near genes chrX 20578132 intergenic not near genes chrX 20578189 intergenic not near genes chrX_5_20575001 chrX_20575001 RAL-28 1247 chrX 20814201 20814228 chrX 20814295 20814322 8 93 3.5 2.0 2.8 2.1 121 chrX 20814201 intron shakB - chrX 20814262 intron shakB - chrX 20814322 intron shakB - chrX_8_20810001 chrX_20810001 RAL-28 1248 chrX 20940743 20940748 chrX 20942212 20942216 hobo 4 1468 3.5 4.5 4.0 0.8 1473 chrX 20940743 intergenic not near genes chrX 20941480 intergenic not near genes chrX 20942216 intergenic not near genes chrX_4_20940001 chrX_20940001 RAL-28 1249 chrX 21076347 21076358 chrX 21076405 21076436 4 69 2.0 0.0 1.0 2.0 89 chrX 21076347 intron bves + chrX 21076392 intron bves + chrX 21076436 intron bves + chrX_4_21075001 chrX_21075001 RAL-28 1250 chrX 21086139 21086147 chrX 21087168 21087175 jockey 4 1028 1.5 1.0 1.2 1.8 1036 chrX 21086139 intergenic not near genes chrX 21086657 intergenic not near genes chrX 21087175 intergenic not near genes chrX_4_21085001 chrX_21085001 RAL-28 1251 chrX 21264750 21264761 chrX 21264824 21264836 4 75 0.5 1.5 1.0 2.0 86 chrX 21264750 intron CG32521 - chrX 21264793 intron CG32521 - chrX 21264836 intron CG32521 - chrX_4_21260001 chrX_21260001 RAL-28