SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 325142 325151 chr2L 325213 325227 4 75 2.0 3.5 2.8 1.1 85 chr2L 325142 intron Plc21C + chr2L 325184 intron Plc21C + chr2L 325227 intron Plc21C + chr2L_4_325001 chr2L_325001 RAL-287 2 chr2L 632707 632738 chr2L 632785 632818 8 75 0.5 2.5 1.5 3.2 111 chr2L 632707 intergenic not near genes chr2L 632762 intergenic not near genes chr2L 632818 intergenic not near genes chr2L_8_630001 chr2L_630001 RAL-287 3 chr2L 702861 702884 chr2L 702937 702958 4 72 0.0 4.0 2.0 1.3 97 chr2L 702861 intron ds - chr2L 702910 intron ds - chr2L 702958 intron ds - chr2L_4_700001 chr2L_700001 RAL-287 4 chr2L 730778 730785 chr2L 730869 730876 4 90 3.5 1.5 2.5 1.1 98 chr2L 730778 intergenic Hsp60B + chr2L 730827 intergenic Hsp60B + chr2L 730876 intergenic Hsp60B + chr2L_4_730001 chr2L_730001 RAL-287 5 chr2L 764555 764572 chr2L 764654 764672 5 99 1.5 3.0 2.2 1.6 117 chr2L 764555 intergenic not near genes chr2L 764614 intergenic not near genes chr2L 764672 intergenic not near genes chr2L_5_760001 chr2L_760001 RAL-287 6 chr2L 968805 968834 chr2L 968879 968897 6 76 2.0 2.0 2.0 2.0 92 chr2L 968805 intergenic not near genes chr2L 968851 intergenic not near genes chr2L 968897 intergenic not near genes chr2L_6_965001 chr2L_965001 RAL-287 7 chr2L 1164249 1164275 chr2L 1164335 1164361 4 86 1.0 1.0 1.0 2.0 112 chr2L 1164249 intergenic IntS14 +,CG5080 - chr2L 1164305 intergenic IntS14 +,CG5080 - chr2L 1164361 intergenic IntS14 +,CG5080 - chr2L_4_1160001 chr2L_1160001 RAL-287 8 chr2L 1220129 1220159 chr2L 1227595 1227625 blood 9 7464 3.5 1.5 2.5 2.6 7496 chr2L 1220129 intron CG42329 + chr2L 1223877 intron CG42329 + chr2L 1227625 intron CG42329 + chr2L_9_1220001 chr2L_1220001 RAL-287 9 chr2L 1615384 1615403 chr2L 1615466 1615485 5 82 0.0 2.5 1.2 2.3 101 chr2L 1615384 intergenic not near genes chr2L 1615434 intergenic not near genes chr2L 1615485 intergenic not near genes chr2L_5_1615001 chr2L_1615001 RAL-287 10 chr2L 1711360 1711379 chr2L 1711682 1711703 mdg3 6 321 3.5 5.5 4.5 1.1 343 chr2L 1711360 3` UTR,3` UTR mRpL48 +,frtz - chr2L 1711532 3` UTR frtz - chr2L 1711703 3` UTR frtz - chr2L_6_1710001 chr2L_1710001 RAL-287 11 chr2L 1828932 1828955 chr2L 1829009 1829032 5 76 1.5 0.0 0.8 2.8 100 chr2L 1828932 intergenic not near genes chr2L 1828982 intergenic not near genes chr2L 1829032 intergenic not near genes chr2L_5_1825001 chr2L_1825001 RAL-287 12 chr2L 1993198 1993230 chr2L 1993284 1993292 4 78 0.5 1.0 0.8 2.2 94 chr2L 1993198 intergenic not near genes chr2L 1993245 intergenic not near genes chr2L 1993292 intergenic not near genes chr2L_4_1990001 chr2L_1990001 RAL-287 13 chr2L 2667623 2667657 chr2L 2667702 2667708 10 73 0.5 0.0 0.2 8.3 85 chr2L 2667623 intergenic not near genes chr2L 2667666 intergenic not near genes chr2L 2667708 intergenic not near genes chr2L_10_2665001 chr2L_2665001 RAL-287 14 chr2L 3073029 3073052 chr2L 3078232 3078255 copia 4 5203 2.0 1.0 1.5 1.6 5226 chr2L 3073029 intron toc - chr2L 3075642 intron toc - chr2L 3078255 intron toc - chr2L_4_3075001 chr2L_3075001 RAL-287 15 chr2L 3108882 3108896 chr2L 3108948 3108973 6 72 2.0 0.0 1.0 3.0 91 chr2L 3108882 intron toc - chr2L 3108928 intron toc - chr2L 3108973 intron toc - chr2L_6_3105001 chr2L_3105001 RAL-287 16 chr2L 3397346 3397377 chr2L 3397486 3397519 4 140 1.5 2.5 2.0 1.3 173 chr2L 3397346 3` UTR CR44792 - chr2L 3397432 3` UTR CR44792 - chr2L 3397519 3` UTR CR44792 - chr2L_4_3395001 chr2L_3395001 RAL-287 17 chr2L 3582885 3582909 chr2L 3582962 3582986 5 77 0.0 4.5 2.2 1.6 101 chr2L 3582885 intergenic not near genes chr2L 3582936 intergenic not near genes chr2L 3582986 intergenic not near genes chr2L_5_3580001 chr2L_3580001 RAL-287 18 chr2L 4166377 4166409 chr2L 4166459 4166492 8 80 1.0 1.0 1.0 4.0 115 chr2L 4166377 intergenic Or24a - chr2L 4166434 intergenic Or24a - chr2L 4166492 intergenic Or24a - chr2L_8_4165001 chr2L_4165001 RAL-287 19 chr2L 4601705 4601730 chr2L 4609145 4609171 mdg1 5 7440 1.5 1.0 1.2 2.3 7466 chr2L 4601705 intron dp - chr2L 4605438 intron dp - chr2L 4609171 intron dp - chr2L_5_4605001 chr2L_4605001 RAL-287 20 chr2L 5827710 5827736 chr2L 5836718 5836743 roo 5 9007 2.5 4.0 3.2 1.2 9033 chr2L 5827710 intron TrissinR + chr2L 5832226 intron TrissinR + chr2L 5836743 intron TrissinR + chr2L_5_5830001 chr2L_5830001 RAL-287 21 chr2L 5897598 5897621 chr2L 5897681 5897704 9 83 4.5 3.0 3.8 1.9 106 chr2L 5897598 intergenic not near genes chr2L 5897651 intergenic not near genes chr2L 5897704 intergenic not near genes chr2L_9_5895001 chr2L_5895001 RAL-287 22 chr2L 5989038 5989064 chr2L 5989114 5989139 7 75 1.5 0.0 0.8 3.9 101 chr2L 5989038 intergenic ifc +,lid - chr2L 5989088 intergenic ifc +,lid - chr2L 5989139 intergenic lid -,ifc + chr2L_7_5985001 chr2L_5985001 RAL-287 23 chr2L 6021628 6021634 chr2L 6021697 6021711 4 75 4.5 0.5 2.5 1.1 83 chr2L 6021628 exon CG13996 + chr2L 6021670 exon CG13996 + chr2L 6021711 3` UTR CG13996 + chr2L_4_6020001 chr2L_6020001 RAL-287 24 chr2L 6426872 6426886 chr2L 6445129 6445143 roo 6 18259 1.5 5.0 3.2 1.4 18271 chr2L 6426872 3` UTR CG9527 - chr2L 6436008 intron CG9527 - chr2L 6445143 exon CG9527 - chr2L_6_6435001 chr2L_6435001 RAL-287 25 chr2L 7343323 7343356 chr2L 7350439 7350470 roo 6 7116 2.5 1.0 1.8 2.1 7147 chr2L 7343323 intron Wnt6 + chr2L 7346896 intron Wnt6 + chr2L 7350470 intron Wnt6 + chr2L_6_7345001 chr2L_7345001 RAL-287 26 chr2L 7493671 7493703 chr2L 7493882 7493914 6 210 1.5 0.0 0.8 3.3 243 chr2L 7493671 intron Ziz - chr2L 7493792 intron Ziz - chr2L 7493914 intron Ziz - chr2L_6_7490001 chr2L_7490001 RAL-287 27 chr2L 7867584 7867595 chr2L 7867656 7867689 4 86 1.0 0.5 0.8 2.2 105 chr2L 7867584 intron Proc - chr2L 7867636 intron Proc - chr2L 7867689 intron Proc - chr2L_4_7865001 chr2L_7865001 RAL-287 28 chr2L 7977097 7977106 chr2L 7984072 7984081 297 4 6974 4.0 1.5 2.8 1.1 6984 chr2L 7977097 intron Snoo - chr2L 7980589 intron Snoo - chr2L 7984081 intron,5` UTR Snoo -,CG7231 + chr2L_4_7980001 chr2L_7980001 RAL-287 29 chr2L 8510136 8510163 chr2L 8510225 8510234 4 84 1.5 0.0 0.8 2.2 98 chr2L 8510136 exon CG13096 - chr2L 8510185 intron CG13096 - chr2L 8510234 intron CG13096 - chr2L_4_8510001 chr2L_8510001 RAL-287 30 chr2L 9000285 9000309 chr2L 9007795 9007816 roo 5 7509 1.5 2.5 2.0 1.7 7531 chr2L 9000285 intergenic Try29F + chr2L 9004050 intergenic not near genes chr2L 9007816 intergenic not near genes chr2L_5_9000001 chr2L_9000001 RAL-287 31 chr2L 9202054 9202077 chr2L 9202130 9202153 6 76 0.5 2.0 1.2 2.7 99 chr2L 9202054 intron tai + chr2L 9202104 intron tai + chr2L 9202153 intron tai + chr2L_6_9200001 chr2L_9200001 RAL-287 32 chr2L 9264343 9264374 chr2L 9264442 9264474 5 97 3.5 0.0 1.8 1.8 131 chr2L 9264343 intron Ggamma30A + chr2L 9264408 intron Ggamma30A + chr2L 9264474 intron Ggamma30A + chr2L_5_9260001 chr2L_9260001 RAL-287 33 chr2L 9297379 9297403 chr2L 9297456 9297479 8 77 3.5 2.0 2.8 2.1 100 chr2L 9297379 3` UTR Ggamma30A + chr2L 9297429 3` UTR Ggamma30A + chr2L 9297479 3` UTR Ggamma30A + chr2L_8_9295001 chr2L_9295001 RAL-287 34 chr2L 9303521 9303546 chr2L 9303599 9303626 4 78 0.5 2.5 1.5 1.6 105 chr2L 9303521 intergenic not near genes chr2L 9303574 intergenic not near genes chr2L 9303626 intergenic not near genes chr2L_4_9300001 chr2L_9300001 RAL-287 35 chr2L 9393500 9393528 chr2L 9396467 9396495 jockey 7 2966 1.0 4.5 2.8 1.8 2995 chr2L 9393500 intron Shawl - chr2L 9394998 intron Shawl - chr2L 9396495 intron Shawl - chr2L_7_9390001 chr2L_9390001 RAL-287 36 chr2L 9973732 9973750 chr2L 9980844 9980844 HMS-Beagle 6 7111 2.0 2.0 2.0 2.0 7112 chr2L 9973732 intergenic not near genes chr2L 9977288 intergenic not near genes chr2L 9980844 intergenic not near genes chr2L_6_9975001 chr2L_9975001 RAL-287 37 chr2L 10153210 10153236 chr2L 10153289 10153314 6 77 1.0 7.0 4.0 1.2 104 chr2L 10153210 intron,exon CG44153 -,CG4839 + chr2L 10153262 intron,intron CG44153 -,CG4839 + chr2L 10153314 intron,intron CG44153 -,CG4839 + chr2L_6_10150001 chr2L_10150001 RAL-287 38 chr2L 10479391 10479402 chr2L 10479473 10479484 5 81 1.0 2.0 1.5 2.0 93 chr2L 10479391 intron RluA-2 + chr2L 10479438 intron RluA-2 + chr2L 10479484 intron RluA-2 + chr2L_5_10475001 chr2L_10475001 RAL-287 39 chr2L 10495295 10495463 chr2L 10495371 10495549 5 82 0.5 0.0 0.2 4.2 254 chr2L 10495295 intron Myo31DF - chr2L 10495422 intron Myo31DF - chr2L 10495549 intron Myo31DF - chr2L_5_10495001 chr2L_10495001 RAL-287 40 chr2L 10499551 10499582 chr2L 10499650 10499680 7 97 4.0 1.5 2.8 1.8 129 chr2L 10499551 intron Myo31DF - chr2L 10499616 intron Myo31DF - chr2L 10499680 intron Myo31DF - chr2L_7_10495001 chr2L_10495001 RAL-287 41 chr2L 10692786 10692823 chr2L 10692884 10692909 8 96 2.0 1.5 1.8 2.9 123 chr2L 10692786 intergenic CG17108 - chr2L 10692848 intergenic CG17108 - chr2L 10692909 intergenic CG17108 - chr2L_8_10690001 chr2L_10690001 RAL-287 42 chr2L 10862840 10862877 chr2L 10864454 10864476 Rt1c 7 1610 2.0 3.0 2.5 2.0 1636 chr2L 10862840 3` UTR CR43807 - chr2L 10863658 intron CR43807 - chr2L 10864476 3` UTR CR43807 - chr2L_7_10860001 chr2L_10860001 RAL-287 43 chr2L 10946948 10946968 chr2L 10956163 10956168 roo 7 9211 2.5 6.0 4.2 1.3 9220 chr2L 10946948 intron dpr2 - chr2L 10951558 intron dpr2 - chr2L 10956168 intron dpr2 - chr2L_7_10950001 chr2L_10950001 RAL-287 44 chr2L 11332050 11332073 chr2L 11332152 11332176 8 97 0.0 0.5 0.2 6.7 126 chr2L 11332050 3` UTR CR44584 - chr2L 11332113 3` UTR CR44584 - chr2L 11332176 3` UTR CR44584 - chr2L_8_11330001 chr2L_11330001 RAL-287 45 chr2L 11538822 11538857 chr2L 11538907 11538942 7 81 3.5 1.5 2.5 2.0 120 chr2L 11538822 intergenic not near genes chr2L 11538882 intergenic not near genes chr2L 11538942 intergenic not near genes chr2L_7_11535001 chr2L_11535001 RAL-287 46 chr2L 11614050 11614080 chr2L 11615545 11615572 hopper2 4 1492 3.0 0.0 1.5 1.6 1522 chr2L 11614050 intron kek2 + chr2L 11614811 intron kek2 + chr2L 11615572 intron kek2 + chr2L_4_11610001 chr2L_11610001 RAL-287 47 chr2L 11702627 11702657 chr2L 11702720 11702751 4 94 0.5 3.0 1.8 1.4 124 chr2L 11702627 intergenic not near genes chr2L 11702689 intergenic not near genes chr2L 11702751 intergenic not near genes chr2L_4_11700001 chr2L_11700001 RAL-287 48 chr2L 11713509 11713540 chr2L 11720977 11721007 blood 6 7465 0.5 3.0 1.8 2.1 7498 chr2L 11713509 intergenic not near genes chr2L 11717258 intergenic not near genes chr2L 11721007 intergenic CR44143 + chr2L_6_11715001 chr2L_11715001 RAL-287 49 chr2L 11947005 11947021 chr2L 11947103 11947121 6 101 1.0 2.0 1.5 2.4 116 chr2L 11947005 3` UTR Cry + chr2L 11947063 3` UTR Cry + chr2L 11947121 3` UTR Cry + chr2L_6_11945001 chr2L_11945001 RAL-287 50 chr2L 12487886 12487916 chr2L 12487967 12487990 5 79 0.0 1.0 0.5 3.3 104 chr2L 12487886 intron bun - chr2L 12487938 intron bun - chr2L 12487990 intron bun - chr2L_5_12485001 chr2L_12485001 RAL-287 51 chr2L 12647712 12647730 chr2L 12647793 12647802 5 77 2.0 3.5 2.8 1.3 90 chr2L 12647712 intergenic not near genes chr2L 12647757 intergenic not near genes chr2L 12647802 intergenic not near genes chr2L_5_12645001 chr2L_12645001 RAL-287 52 chr2L 12693849 12693866 chr2L 12693926 12693943 6 76 3.0 0.0 1.5 2.4 94 chr2L 12693849 3` UTR CG6153 + chr2L 12693896 3` UTR,3` UTR CG6153 +,CG5780 - chr2L 12693943 3` UTR CG5780 - chr2L_6_12690001 chr2L_12690001 RAL-287 53 chr2L 12759206 12759239 chr2L 12759301 12759333 9 94 0.5 2.0 1.2 4.1 127 chr2L 12759206 intergenic not near genes chr2L 12759270 intergenic not near genes chr2L 12759333 intergenic not near genes chr2L_9_12755001 chr2L_12755001 RAL-287 54 chr2L 12861701 12861731 chr2L 12863164 12863180 hobo 7 1461 1.0 3.0 2.0 2.3 1479 chr2L 12861701 intergenic not near genes chr2L 12862440 intergenic not near genes chr2L 12863180 intergenic not near genes chr2L_7_12860001 chr2L_12860001 RAL-287 55 chr2L 12933848 12933877 chr2L 12941315 12941330 blood 7 7462 3.0 1.0 2.0 2.3 7482 chr2L 12933848 intergenic not near genes chr2L 12937589 intergenic not near genes chr2L 12941330 intergenic not near genes chr2L_7_12935001 chr2L_12935001 RAL-287 56 chr2L 12963805 12963821 chr2L 12963904 12963908 5 95 2.5 4.5 3.5 1.1 103 chr2L 12963805 intergenic not near genes chr2L 12963856 intergenic not near genes chr2L 12963908 intergenic not near genes chr2L_5_12960001 chr2L_12960001 RAL-287 57 chr2L 13152233 13152259 chr2L 13152311 13152337 9 76 3.0 1.5 2.2 2.8 104 chr2L 13152233 intergenic not near genes chr2L 13152285 intergenic not near genes chr2L 13152337 intergenic not near genes chr2L_9_13150001 chr2L_13150001 RAL-287 58 chr2L 13215396 13215413 chr2L 13215671 13215688 4 275 0.5 2.0 1.2 1.8 292 chr2L 13215396 intergenic kek4 -,snRNA:U2:34ABb +,snRNA:U2:34ABc + chr2L 13215542 intergenic kek4 -,snRNA:U2:34ABb +,snRNA:U2:34ABc + chr2L 13215688 intergenic snRNA:U2:34ABb +,snRNA:U2:34ABc +,kek4 - chr2L_4_13215001 chr2L_13215001 RAL-287 59 chr2L 13321902 13321928 chr2L 13321991 13322017 5 88 4.0 0.5 2.2 1.6 115 chr2L 13321902 intron CG43778 - chr2L 13321960 intron CG43778 - chr2L 13322017 intron CG43778 - chr2L_5_13320001 chr2L_13320001 RAL-287 60 chr2L 13701888 13701899 chr2L 13701966 13701979 4 80 0.0 1.5 0.8 2.2 91 chr2L 13701888 intron CG31814 - chr2L 13701934 intron CG31814 - chr2L 13701979 intron CG31814 - chr2L_4_13700001 chr2L_13700001 RAL-287 61 chr2L 13761803 13761828 chr2L 13762914 13762935 Doc 4 1110 3.5 1.5 2.5 1.1 1132 chr2L 13761803 intron TM9SF4 + chr2L 13762369 intron TM9SF4 + chr2L 13762935 intron TM9SF4 + chr2L_4_13760001 chr2L_13760001 RAL-287 62 chr2L 13892821 13892850 chr2L 13893684 13893706 5 860 1.0 0.5 0.8 2.8 885 chr2L 13892821 intron CenG1A + chr2L 13893264 intron CenG1A + chr2L 13893706 intron CenG1A + chr2L_5_13890001 chr2L_13890001 RAL-287 63 chr2L 14121789 14121800 chr2L 14121861 14121882 4 79 3.5 3.0 3.2 1.0 93 chr2L 14121789 intergenic not near genes chr2L 14121836 intergenic not near genes chr2L 14121882 intergenic not near genes chr2L_4_14120001 chr2L_14120001 RAL-287 64 chr2L 14369130 14369162 chr2L 14369246 14369277 4 116 1.0 1.5 1.2 1.8 147 chr2L 14369130 intergenic not near genes chr2L 14369204 intergenic not near genes chr2L 14369277 intergenic not near genes chr2L_4_14365001 chr2L_14365001 RAL-287 65 chr2L 14554168 14554197 chr2L 14554245 14554272 7 75 3.5 3.0 3.2 1.7 104 chr2L 14554168 intergenic not near genes chr2L 14554220 intergenic not near genes chr2L 14554272 intergenic not near genes chr2L_7_14550001 chr2L_14550001 RAL-287 66 chr2L 14564223 14564228 chr2L 14564272 14564275 4 47 1.5 0.0 0.8 2.2 52 chr2L 14564223 intergenic CG3473 - chr2L 14564249 intergenic not near genes chr2L 14564275 intergenic not near genes chr2L_4_14560001 chr2L_14560001 RAL-287 67 chr2L 14642578 14642597 chr2L 14651739 14651760 roo 7 9161 1.5 2.0 1.8 2.5 9182 chr2L 14642578 intron osp - chr2L 14647169 intron osp - chr2L 14651760 intron osp - chr2L_7_14645001 chr2L_14645001 RAL-287 68 chr2L 14803884 14803911 chr2L 14809082 14809114 copia 9 5195 1.5 4.5 3.0 2.2 5230 chr2L 14803884 intergenic not near genes chr2L 14806499 intergenic not near genes chr2L 14809114 intergenic not near genes chr2L_9_14805001 chr2L_14805001 RAL-287 69 chr2L 14889982 14889988 chr2L 14890400 14890413 jockey 4 423 0.5 4.0 2.2 1.2 431 chr2L 14889982 intergenic not near genes chr2L 14890198 intergenic not near genes chr2L 14890413 intergenic not near genes chr2L_4_14890001 chr2L_14890001 RAL-287 70 chr2L 15355718 15355737 chr2L 15355795 15355815 4 78 2.0 0.5 1.2 1.8 97 chr2L 15355718 intergenic not near genes chr2L 15355766 intergenic not near genes chr2L 15355815 intergenic not near genes chr2L_4_15355001 chr2L_15355001 RAL-287 71 chr2L 15468778 15468807 chr2L 15468862 15468866 9 78 1.5 2.0 1.8 3.2 88 chr2L 15468778 intergenic CR45353 - chr2L 15468822 intergenic CR45353 - chr2L 15468866 intergenic CR45353 - chr2L_9_15465001 chr2L_15465001 RAL-287 72 chr2L 15586413 15586437 chr2L 15593465 15593489 297 4 7047 1.5 1.0 1.2 1.8 7076 chr2L 15586413 intergenic not near genes chr2L 15589951 intergenic not near genes chr2L 15593489 intergenic not near genes chr2L_4_15585001 chr2L_15585001 RAL-287 73 chr2L 15852061 15852078 chr2L 15852128 15852132 7 72 4.5 2.5 3.5 1.6 71 chr2L 15852061 intergenic not near genes chr2L 15852096 intergenic CG13243 + chr2L 15852132 intergenic CG13243 + chr2L_7_15850001 chr2L_15850001 RAL-287 74 chr2L 15956027 15956041 chr2L 15957494 15957508 hobo 4 1466 2.0 0.5 1.2 1.8 1481 chr2L 15956027 intron beat-Ib - chr2L 15956768 intron beat-Ib - chr2L 15957508 intron beat-Ib - chr2L_4_15955001 chr2L_15955001 RAL-287 75 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 10 145889 12.5 16.0 14.2 0.7 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_10_16140001 chr2L_16140001 RAL-287 76 chr2L 16086682 16086703 chr2L 16086874 16086895 4 192 2.0 1.5 1.8 1.4 213 chr2L 16086682 intergenic not near genes chr2L 16086788 intergenic not near genes chr2L 16086895 intergenic not near genes chr2L_4_16085001 chr2L_16085001 RAL-287 77 chr2L 16270389 16270406 chr2L 16270464 16270485 4 78 2.0 0.5 1.2 1.8 96 chr2L 16270389 intron crp - chr2L 16270437 intron crp - chr2L 16270485 intron crp - chr2L_4_16270001 chr2L_16270001 RAL-287 78 chr2L 17543602 17543624 chr2L 17543691 17543717 4 89 1.0 0.5 0.8 2.2 115 chr2L 17543602 intergenic not near genes chr2L 17543660 intergenic not near genes chr2L 17543717 intergenic not near genes chr2L_4_17540001 chr2L_17540001 RAL-287 79 chr2L 18079827 18079843 chr2L 18079912 18079929 4 86 2.5 3.5 3.0 1.0 102 chr2L 18079827 intron Arr1 + chr2L 18079878 intron Arr1 + chr2L 18079929 intron Arr1 + chr2L_4_18075001 chr2L_18075001 RAL-287 80 chr2L 18243707 18243718 chr2L 18244323 18244348 4 622 2.5 0.5 1.5 1.6 641 chr2L 18243707 intron CG42750 - chr2L 18244028 intron CG42750 - chr2L 18244348 intron CG42750 - chr2L_4_18240001 chr2L_18240001 RAL-287 81 chr2L 18408027 18408053 chr2L 18412809 18412835 Doc 4 4783 4.0 0.0 2.0 1.3 4808 chr2L 18408027 intergenic not near genes chr2L 18410431 intergenic not near genes chr2L 18412835 intergenic not near genes chr2L_4_18410001 chr2L_18410001 RAL-287 82 chr2L 18478802 18478829 chr2L 18480233 18480260 5 1426 2.0 2.5 2.2 1.6 1458 chr2L 18478802 intron CG10283 - chr2L 18479531 intron CG10283 - chr2L 18480260 intron CG10283 - chr2L_5_18475001 chr2L_18475001 RAL-287 83 chr2L 18522080 18522086 chr2L 18522209 18522215 5 129 0.5 3.5 2.0 1.7 135 chr2L 18522080 intron CG10211 + chr2L 18522148 intron CG10211 + chr2L 18522215 intron CG10211 + chr2L_5_18520001 chr2L_18520001 RAL-287 84 chr2L 18699223 18699235 chr2L 18699298 18699311 4 74 3.5 5.0 4.2 0.8 88 chr2L 18699223 exon CG10341 + chr2L 18699267 exon CG10341 + chr2L 18699311 exon CG10341 + chr2L_4_18695001 chr2L_18695001 RAL-287 85 chr2L 18883862 18883880 chr2L 18883944 18883954 8 80 2.0 5.0 3.5 1.8 92 chr2L 18883862 intergenic not near genes chr2L 18883908 intergenic not near genes chr2L 18883954 intergenic not near genes chr2L_8_18880001 chr2L_18880001 RAL-287 86 chr2L 18925227 18925253 chr2L 18925322 18925345 7 94 0.5 0.5 0.5 4.7 118 chr2L 18925227 intron ssp3 - chr2L 18925286 intron ssp3 - chr2L 18925345 intron ssp3 - chr2L_7_18925001 chr2L_18925001 RAL-287 87 chr2L 19024096 19024097 chr2L 21768291 21768291 6 2744194 6.5 17.5 12.0 0.5 2744195 chr2L 19024096 3` UTR CR43700 - chr2L 20396194 intron CG10947 - chr2L 21768291 intron CG31612 - chr2L_6_20395001 chr2L_20395001 RAL-287 88 chr2L 19147276 19147285 chr2L 19147390 19147397 4 114 5.0 0.0 2.5 1.1 121 chr2L 19147276 intron brat + chr2L 19147336 intron brat + chr2L 19147397 intron brat + chr2L_4_19145001 chr2L_19145001 RAL-287 89 chr2L 19163382 19163397 chr2L 19163448 19163472 4 74 3.5 1.5 2.5 1.1 90 chr2L 19163382 intron brat + chr2L 19163427 intron brat + chr2L 19163472 intron brat + chr2L_4_19160001 chr2L_19160001 RAL-287 90 chr2L 19304230 19304258 chr2L 19304332 19304360 8 100 2.0 1.0 1.5 3.2 130 chr2L 19304230 intergenic not near genes chr2L 19304295 intergenic not near genes chr2L 19304360 intergenic not near genes chr2L_8_19300001 chr2L_19300001 RAL-287 91 chr2L 19345019 19345041 chr2L 19357228 19357248 blood 5 12209 4.5 0.5 2.5 1.4 12229 chr2L 19345019 intron dnt - chr2L 19351134 intron dnt - chr2L 19357248 intron dnt - chr2L_5_19350001 chr2L_19350001 RAL-287 92 chr2L 19469177 19469200 chr2L 19469262 19469285 4 80 1.5 2.5 2.0 1.3 108 chr2L 19469177 5` UTR CR45722 + chr2L 19469231 5` UTR CR45722 + chr2L 19469285 5` UTR CR45722 + chr2L_4_19465001 chr2L_19465001 RAL-287 93 chr2L 19559404 19559416 chr2L 19559463 19559467 4 65 0.0 0.5 0.2 3.3 63 chr2L 19559404 exon Tep5 + chr2L 19559436 exon Tep5 + chr2L 19559467 exon Tep5 + chr2L_4_19555001 chr2L_19555001 RAL-287 94 chr2L 19560025 19560035 chr2L 19560269 19560276 4 244 1.0 2.0 1.5 1.6 251 chr2L 19560025 exon Tep5 + chr2L 19560150 exon Tep5 + chr2L 19560276 intron Tep5 + chr2L_4_19560001 chr2L_19560001 RAL-287 95 chr2L 19703538 19703570 chr2L 19712674 19712704 roo 5 9135 3.5 1.0 2.2 1.6 9166 chr2L 19703538 intron Lar + chr2L 19708121 intron Lar + chr2L 19712704 intron Lar + chr2L_5_19705001 chr2L_19705001 RAL-287 96 chr2L 19712690 19712720 chr2L 19712770 19712790 4 78 3.5 2.0 2.8 1.1 100 chr2L 19712690 intron Lar + chr2L 19712740 intron Lar + chr2L 19712790 intron Lar + chr2L_4_19710001 chr2L_19710001 RAL-287 97 chr2L 19737380 19737383 chr2L 19740825 19740836 1360 4 3455 0.5 2.0 1.2 1.8 3456 chr2L 19737380 intergenic Nf-YB + chr2L 19739108 intergenic not near genes chr2L 19740836 intergenic not near genes chr2L_4_19735001 chr2L_19735001 RAL-287 98 chr2L 19871556 19871569 chr2L 19871631 19871656 6 83 1.5 1.0 1.2 2.7 100 chr2L 19871556 intron sick + chr2L 19871606 intron sick + chr2L 19871656 intron sick + chr2L_6_19870001 chr2L_19870001 RAL-287 99 chr2L 20069532 20069545 chr2L 20069607 20069623 5 77 3.5 3.5 3.5 1.1 91 chr2L 20069532 intron bwa + chr2L 20069578 intron bwa + chr2L 20069623 intron bwa + chr2L_5_20065001 chr2L_20065001 RAL-287 100 chr2L 20576221 20576246 chr2L 20583689 20583708 blood 5 7463 5.0 1.0 3.0 1.2 7487 chr2L 20576221 intergenic not near genes chr2L 20579964 intergenic not near genes chr2L 20583708 3` UTR CR44909 - chr2L_5_20575001 chr2L_20575001 RAL-287 101 chr2L 20601788 20601809 chr2L 20601866 20601887 6 76 2.5 1.0 1.8 2.1 99 chr2L 20601788 intron CR44909 - chr2L 20601838 intron CR44909 - chr2L 20601887 intron CR44909 - chr2L_6_20600001 chr2L_20600001 RAL-287 102 chr2L 20804705 20804727 chr2L 20804790 20804812 4 85 2.0 1.5 1.8 1.4 107 chr2L 20804705 intron CG9328 + chr2L 20804758 intron CG9328 + chr2L 20804812 intron CG9328 + chr2L_4_20800001 chr2L_20800001 RAL-287 103 chr2L 21020283 21020309 chr2L 21023959 21023986 NOF 6 3674 1.5 0.5 1.0 3.0 3703 chr2L 21020283 intron CG42238 - chr2L 21022134 intron CG42238 - chr2L 21023986 intron CG42238 - chr2L_6_21020001 chr2L_21020001 RAL-287 104 chr2L 21041143 21041165 chr2L 21049399 21049426 Tirant 4 8257 0.5 3.5 2.0 1.3 8283 chr2L 21041143 intron CG42238 - chr2L 21045284 intron CG42238 - chr2L 21049426 intron CG42238 - chr2L_4_21045001 chr2L_21045001 RAL-287 105 chr2L 22011922 22011947 chr2L 22012003 22012018 5 79 3.0 2.5 2.8 1.3 96 chr2L 22011922 intergenic not near genes chr2L 22011970 intergenic not near genes chr2L 22012018 intergenic not near genes chr2L_5_22010001 chr2L_22010001 RAL-287 106 chr2L 22490511 22490531 chr2L 22497636 22497645 springer 5 7121 0.0 0.0 0.0 5.0 7134 chr2L 22490511 intergenic not near genes chr2L 22494078 intergenic not near genes chr2L 22497645 intergenic not near genes chr2L_5_22490001 chr2L_22490001 RAL-287 107 chr2L 22545980 22546003 chr2L 22546075 22546080 5 89 1.5 1.5 1.5 2.0 100 chr2L 22545980 intron CG17490 + chr2L 22546030 intron CG17490 + chr2L 22546080 intron CG17490 + chr2L_5_22545001 chr2L_22545001 RAL-287 108 chr2R 529329 529354 chr2R 537954 537979 Max-element 5 8625 1.0 2.5 1.8 1.8 8650 chr2R 529329 intron CG40378 + chr2R 533654 intron CG40378 + chr2R 537979 intron CG40378 + chr2R_5_530001 chr2R_530001 RAL-287 109 chr2R 552759 552787 chr2R 553977 553989 1360 7 1210 1.0 0.0 0.5 4.7 1230 chr2R 552759 intron CG40378 + chr2R 553374 intron CG40378 + chr2R 553989 intron CG40378 + chr2R_7_550001 chr2R_550001 RAL-287 110 chr2R 3291790 3291928 chr2R 3914905 3915031 4 623086 18.0 11.0 14.5 0.3 623241 chr2R 3291790 intergenic not near genes chr2R 3603410 intergenic not near genes chr2R 3915031 intron uex - chr2R_4_3600001 chr2R_3600001 RAL-287 111 chr2R 4602848 4602873 chr2R 4603198 4603224 5 342 3.5 5.5 4.5 0.9 376 chr2R 4602848 intron p120ctn + chr2R 4603036 intron p120ctn + chr2R 4603224 intron p120ctn + chr2R_5_4600001 chr2R_4600001 RAL-287 112 chr2R 4656788 4656809 chr2R 4656891 4656895 5 100 19.0 22.0 20.5 0.2 107 chr2R 4656788 intergenic not near genes chr2R 4656842 intergenic not near genes chr2R 4656895 intergenic not near genes chr2R_5_4655001 chr2R_4655001 RAL-287 113 chr2R 5421530 5421559 chr2R 5421625 5421642 6 85 19.5 13.0 16.2 0.3 112 chr2R 5421530 intron laccase2 + chr2R 5421586 intron laccase2 + chr2R 5421642 intron laccase2 + chr2R_6_5420001 chr2R_5420001 RAL-287 114 chr2R 5463138 5463163 chr2R 5463448 5463478 5 308 3.5 2.0 2.8 1.3 340 chr2R 5463138 intergenic not near genes chr2R 5463308 intergenic not near genes chr2R 5463478 intergenic not near genes chr2R_5_5460001 chr2R_5460001 RAL-287 115 chr2R 5473366 5473389 chr2R 5473461 5473484 4 93 2.0 0.5 1.2 1.8 118 chr2R 5473366 intron CG30440 - chr2R 5473425 intron CG30440 - chr2R 5473484 intron CG30440 - chr2R_4_5470001 chr2R_5470001 RAL-287 116 chr2R 5491722 5491745 chr2R 5491853 5491886 4 138 0.5 1.0 0.8 2.2 164 chr2R 5491722 intron CG30440 - chr2R 5491804 intron CG30440 - chr2R 5491886 intron CG30440 - chr2R_4_5490001 chr2R_5490001 RAL-287 117 chr2R 6161321 6161344 chr2R 6161400 6161423 4 76 0.0 1.5 0.8 2.2 102 chr2R 6161321 intron EcR - chr2R 6161372 intron EcR - chr2R 6161423 intron EcR - chr2R_4_6160001 chr2R_6160001 RAL-287 118 chr2R 6247810 6247833 chr2R 6247888 6247910 6 78 0.0 3.5 1.8 2.1 100 chr2R 6247810 intron Pld + chr2R 6247860 intron Pld + chr2R 6247910 intron Pld + chr2R_6_6245001 chr2R_6245001 RAL-287 119 chr2R 6500959 6500993 chr2R 6501054 6501088 10 90 3.0 4.0 3.5 2.2 129 chr2R 6500959 intergenic not near genes chr2R 6501024 intergenic not near genes chr2R 6501088 intergenic not near genes chr2R_10_6500001 chr2R_6500001 RAL-287 120 chr2R 6691125 6691146 chr2R 6691201 6691223 4 74 3.0 0.5 1.8 1.4 98 chr2R 6691125 intron CG9422 + chr2R 6691174 intron CG9422 + chr2R 6691223 intron CG9422 + chr2R_4_6690001 chr2R_6690001 RAL-287 121 chr2R 6696606 6696622 chr2R 6696689 6696700 4 81 3.0 1.0 2.0 1.3 94 chr2R 6696606 5` UTR Mob4 - chr2R 6696653 5` UTR Mob4 - chr2R 6696700 intergenic Rab2 +,Mob4 - chr2R_4_6695001 chr2R_6695001 RAL-287 122 chr2R 6978639 6978667 chr2R 6978822 6978850 8 183 4.0 2.0 3.0 2.0 211 chr2R 6978639 intron vimar - chr2R 6978744 intron vimar - chr2R 6978850 intron vimar - chr2R_8_6975001 chr2R_6975001 RAL-287 123 chr2R 7153161 7153183 chr2R 7153247 7153269 6 86 4.0 2.5 3.2 1.4 108 chr2R 7153161 intron,intron pk +,Spn43Ab - chr2R 7153215 intron,intron pk +,Spn43Ab - chr2R 7153269 intron,intron pk +,Spn43Ab - chr2R_6_7150001 chr2R_7150001 RAL-287 124 chr2R 7196570 7196600 chr2R 7201345 7201364 F-element 4 4772 0.0 0.0 0.0 4.0 4794 chr2R 7196570 intron pk + chr2R 7198967 intron pk + chr2R 7201364 intron pk + chr2R_4_7195001 chr2R_7195001 RAL-287 125 chr2R 7290189 7290218 chr2R 7290291 7290319 4 102 0.5 0.5 0.5 2.7 130 chr2R 7290189 intron pwn + chr2R 7290254 intron pwn + chr2R 7290319 intron pwn + chr2R_4_7290001 chr2R_7290001 RAL-287 126 chr2R 7868627 7868636 chr2R 7868706 7868717 4 80 0.5 1.5 1.0 2.0 90 chr2R 7868627 intron Dgk - chr2R 7868672 intron Dgk - chr2R 7868717 intron Dgk - chr2R_4_7865001 chr2R_7865001 RAL-287 127 chr2R 8160940 8160953 chr2R 8161026 8161043 1360 5 88 2.5 5.5 4.0 1.0 103 chr2R 8160940 intron CG8708 - chr2R 8160992 intron CG8708 - chr2R 8161043 intron CG8708 - chr2R_5_8160001 chr2R_8160001 RAL-287 128 chr2R 8277635 8277659 chr2R 8277729 8277750 5 91 2.5 2.0 2.2 1.6 115 chr2R 8277635 5` UTR CR44280 + chr2R 8277692 5` UTR CR44280 + chr2R 8277750 5` UTR CR44280 + chr2R_5_8275001 chr2R_8275001 RAL-287 129 chr2R 8330869 8330894 chr2R 8331346 8331378 roo 4 480 3.0 2.0 2.5 1.1 509 chr2R 8330869 intron pdm3 + chr2R 8331124 intron pdm3 + chr2R 8331378 intron pdm3 + chr2R_4_8330001 chr2R_8330001 RAL-287 130 chr2R 8398216 8398243 chr2R 8402993 8403001 Doc 5 4771 1.5 4.0 2.8 1.3 4785 chr2R 8398216 intron CG2121 - chr2R 8400608 intron CG2121 - chr2R 8403001 intron CG2121 - chr2R_5_8400001 chr2R_8400001 RAL-287 131 chr2R 8454930 8454963 chr2R 8455879 8455907 7 946 28.0 9.5 18.8 0.4 977 chr2R 8454930 exon Mal-A2 + chr2R 8455418 exon Mal-A2 + chr2R 8455907 intergenic Mal-A3 -,Mal-A2 + chr2R_7_8455001 chr2R_8455001 RAL-287 132 chr2R 8657735 8657763 chr2R 8657812 8657834 7 76 0.5 1.5 1.0 3.5 99 chr2R 8657735 intron ptc + chr2R 8657784 intron ptc + chr2R 8657834 intron ptc + chr2R_7_8655001 chr2R_8655001 RAL-287 133 chr2R 8722763 8722794 chr2R 8723004 8723013 pogo 6 233 2.0 3.0 2.5 1.7 250 chr2R 8722763 intron CG14767 - chr2R 8722888 intron CG14767 - chr2R 8723013 intron CG14767 - chr2R_6_8720001 chr2R_8720001 RAL-287 134 chr2R 8864873 8864885 chr2R 8865091 8865118 7 226 1.0 0.5 0.8 3.9 245 chr2R 8864873 intron RyR + chr2R 8864996 intron RyR + chr2R 8865118 intron RyR + chr2R_7_8860001 chr2R_8860001 RAL-287 135 chr2R 9212705 9212726 chr2R 9213183 9213211 roo 4 484 3.5 2.0 2.8 1.1 506 chr2R 9212705 intergenic CR45309 + chr2R 9212958 intergenic CR45309 + chr2R 9213211 5` UTR CR45309 + chr2R_4_9210001 chr2R_9210001 RAL-287 136 chr2R 9510666 9510696 chr2R 9510782 9510812 8 115 0.0 0.5 0.2 6.7 146 chr2R 9510666 intron brp + chr2R 9510739 intron brp + chr2R 9510812 intron brp + chr2R_8_9510001 chr2R_9510001 RAL-287 137 chr2R 10167112 10167143 chr2R 10167188 10167204 6 68 2.5 5.0 3.8 1.2 92 chr2R 10167112 intron KCNQ - chr2R 10167158 intron KCNQ - chr2R 10167204 intron KCNQ - chr2R_6_10165001 chr2R_10165001 RAL-287 138 chr2R 10318530 10318540 chr2R 10318616 10318626 4 86 0.5 3.0 1.8 1.4 96 chr2R 10318530 intron Ndg + chr2R 10318578 intron Ndg + chr2R 10318626 intron Ndg + chr2R_4_10315001 chr2R_10315001 RAL-287 139 chr2R 10671265 10671275 chr2R 10671343 10671353 6 78 2.5 0.5 1.5 2.4 88 chr2R 10671265 intergenic not near genes chr2R 10671309 intergenic not near genes chr2R 10671353 intergenic not near genes chr2R_6_10670001 chr2R_10670001 RAL-287 140 chr2R 10796715 10796738 chr2R 10796811 10796836 4 93 1.0 1.5 1.2 1.8 121 chr2R 10796715 intron CG33144 - chr2R 10796776 intron CG33144 - chr2R 10796836 intron CG33144 - chr2R_4_10795001 chr2R_10795001 RAL-287 141 chr2R 10948036 10948053 chr2R 10955575 10955577 17.6 5 7536 1.0 0.5 0.8 2.8 7541 chr2R 10948036 intergenic not near genes chr2R 10951806 intergenic not near genes chr2R 10955577 intergenic not near genes chr2R_5_10950001 chr2R_10950001 RAL-287 142 chr2R 11102874 11102895 chr2R 11102947 11102976 5 75 2.5 0.0 1.2 2.3 102 chr2R 11102874 intron luna - chr2R 11102925 intron luna - chr2R 11102976 intron luna - chr2R_5_11100001 chr2R_11100001 RAL-287 143 chr2R 11344151 11344159 chr2R 11344247 11344255 5 95 0.0 3.5 1.8 1.8 104 chr2R 11344151 intergenic alphaTry - chr2R 11344203 intergenic alphaTry - chr2R 11344255 intergenic alphaTry - chr2R_5_11340001 chr2R_11340001 RAL-287 144 chr2R 11415522 11415549 chr2R 11418670 11418697 opus 5 3147 0.0 3.0 1.5 2.0 3175 chr2R 11415522 intron Drip - chr2R 11417110 intron Drip - chr2R 11418697 intron Drip - chr2R_5_11415001 chr2R_11415001 RAL-287 145 chr2R 11425725 11425741 chr2R 11425812 11425828 4 84 2.0 5.0 3.5 0.9 103 chr2R 11425725 intron Drip - chr2R 11425776 intron Drip - chr2R 11425828 intron Drip - chr2R_4_11425001 chr2R_11425001 RAL-287 146 chr2R 11472663 11472680 chr2R 11473846 11473877 pogo 4 1194 2.0 2.0 2.0 1.3 1214 chr2R 11472663 intergenic not near genes chr2R 11473270 intergenic not near genes chr2R 11473877 intergenic not near genes chr2R_4_11470001 chr2R_11470001 RAL-287 147 chr2R 11485115 11485144 chr2R 11485194 11485218 5 73 5.5 1.0 3.2 1.2 103 chr2R 11485115 intron inv + chr2R 11485166 intron inv + chr2R 11485218 intron inv + chr2R_5_11485001 chr2R_11485001 RAL-287 148 chr2R 11538301 11538322 chr2R 11538401 11538422 4 100 1.0 2.5 1.8 1.4 121 chr2R 11538301 intergenic not near genes chr2R 11538362 intergenic not near genes chr2R 11538422 intergenic not near genes chr2R_4_11535001 chr2R_11535001 RAL-287 149 chr2R 11675001 11675007 chr2R 11675079 11675087 5 78 1.0 3.5 2.2 1.6 86 chr2R 11675001 intron Roc2 - chr2R 11675044 intron Roc2 - chr2R 11675087 intron Roc2 - chr2R_5_11675001 chr2R_11675001 RAL-287 150 chr2R 12093964 12093972 chr2R 12094077 12094085 5 113 0.5 2.0 1.2 2.3 121 chr2R 12093964 intron jeb - chr2R 12094024 intron jeb - chr2R 12094085 intron jeb - chr2R_5_12090001 chr2R_12090001 RAL-287 151 chr2R 12187474 12187497 chr2R 12190090 12190124 20 2621 76.5 48.0 62.2 0.3 2650 chr2R 12187474 exon Cyp6g1 + chr2R 12188799 exon Cyp6g2 - chr2R 12190124 exon Cyp6g2 - chr2R_20_12185001 chr2R_12185001 RAL-287 152 chr2R 12363382 12363417 chr2R 12363814 12363849 5 432 2.5 2.5 2.5 1.4 467 chr2R 12363382 intergenic CG30043 + chr2R 12363616 intergenic CG30043 + chr2R 12363849 intergenic not near genes chr2R_5_12360001 chr2R_12360001 RAL-287 153 chr2R 12501705 12501714 chr2R 12503862 12503871 Rt1c 5 2157 2.0 2.5 2.2 1.6 2166 chr2R 12501705 intron fdl - chr2R 12502788 intron fdl - chr2R 12503871 intron fdl - chr2R_5_12500001 chr2R_12500001 RAL-287 154 chr2R 12643790 12643819 chr2R 12643866 12643896 4 76 0.0 1.0 0.5 2.7 106 chr2R 12643790 intron CG8785 - chr2R 12643843 intron CG8785 - chr2R 12643896 exon CG8785 - chr2R_4_12640001 chr2R_12640001 RAL-287 155 chr2R 13136840 13136860 chr2R 13141638 13141649 Doc 8 4795 5.0 3.5 4.2 1.5 4809 chr2R 13136840 exon Cap-G + chr2R 13139244 intron Cap-G + chr2R 13141649 intron Cap-G + chr2R_8_13135001 chr2R_13135001 RAL-287 156 chr2R 13749409 13749427 chr2R 13749554 13749573 5 146 4.0 2.5 3.2 1.2 164 chr2R 13749409 intergenic fas + chr2R 13749491 intergenic fas + chr2R 13749573 intergenic fas + chr2R_5_13745001 chr2R_13745001 RAL-287 157 chr2R 13905600 13905627 chr2R 13907582 13907600 Rt1a 6 1979 2.0 0.0 1.0 3.0 2000 chr2R 13905600 intron shot - chr2R 13906600 intron shot - chr2R 13907600 intron shot - chr2R_6_13905001 chr2R_13905001 RAL-287 158 chr2R 14018165 14018185 chr2R 14018247 14018269 4 84 0.5 1.0 0.8 2.2 104 chr2R 14018165 intron mam + chr2R 14018217 intron mam + chr2R 14018269 intron mam + chr2R_4_14015001 chr2R_14015001 RAL-287 159 chr2R 14393867 14393895 chr2R 14393949 14393980 8 83 2.5 1.5 2.0 2.7 113 chr2R 14393867 intergenic not near genes chr2R 14393924 intergenic not near genes chr2R 14393980 intergenic not near genes chr2R_8_14390001 chr2R_14390001 RAL-287 160 chr2R 14467291 14467322 chr2R 14476443 14476464 roo 4 9147 0.5 4.5 2.5 1.1 9173 chr2R 14467291 intergenic not near genes chr2R 14471878 intergenic not near genes chr2R 14476464 5` UTR CR44462 + chr2R_4_14470001 chr2R_14470001 RAL-287 161 chr2R 14911700 14911725 chr2R 14911823 14911847 7 122 2.5 1.0 1.8 2.5 147 chr2R 14911700 intron CG10249 - chr2R 14911774 intron CG10249 - chr2R 14911847 intron CG10249 - chr2R_7_14910001 chr2R_14910001 RAL-287 162 chr2R 14922150 14922174 chr2R 14922223 14922246 5 74 1.5 2.5 2.0 1.7 96 chr2R 14922150 intron CG10249 - chr2R 14922198 intron CG10249 - chr2R 14922246 intron CG10249 - chr2R_5_14920001 chr2R_14920001 RAL-287 163 chr2R 14955197 14955226 chr2R 14955347 14955350 5 144 2.0 1.5 1.8 1.8 153 chr2R 14955197 intron aPKC - chr2R 14955274 intron aPKC - chr2R 14955350 intron aPKC - chr2R_5_14955001 chr2R_14955001 RAL-287 164 chr2R 15004723 15004757 chr2R 15005052 15005073 jockey 4 326 1.0 0.0 0.5 2.7 350 chr2R 15004723 intergenic not near genes chr2R 15004898 intergenic not near genes chr2R 15005073 intergenic not near genes chr2R_4_15000001 chr2R_15000001 RAL-287 165 chr2R 15065633 15065650 chr2R 15065694 15065714 4 70 1.5 1.0 1.2 1.8 81 chr2R 15065633 intergenic not near genes chr2R 15065674 intergenic not near genes chr2R 15065714 intergenic not near genes chr2R_4_15065001 chr2R_15065001 RAL-287 166 chr2R 15119338 15119349 chr2R 15127803 15127830 Tirant 4 8477 2.5 2.5 2.5 1.1 8492 chr2R 15119338 intron chn + chr2R 15123584 intron chn + chr2R 15127830 intron chn + chr2R_4_15120001 chr2R_15120001 RAL-287 167 chr2R 15700233 15700272 chr2R 15700348 15700366 6 109 3.5 2.0 2.8 1.6 133 chr2R 15700233 intron,5` UTR CG30080 -,CG42662 - chr2R 15700300 intron,5` UTR CG30080 -,CG42662 - chr2R 15700366 intron,5` UTR CG30080 -,CG42662 - chr2R_6_15700001 chr2R_15700001 RAL-287 168 chr2R 16737137 16737166 chr2R 16737237 16737266 6 100 3.5 3.0 3.2 1.4 129 chr2R 16737137 3` UTR CG43104 - chr2R 16737202 3` UTR CG43104 - chr2R 16737266 exon CG43104 - chr2R_6_16735001 chr2R_16735001 RAL-287 169 chr2R 16962254 16962260 chr2R 16962331 16962337 4 76 5.5 4.5 5.0 0.7 83 chr2R 16962254 intergenic not near genes chr2R 16962296 intergenic not near genes chr2R 16962337 intergenic not near genes chr2R_4_16960001 chr2R_16960001 RAL-287 170 chr2R 17169295 17169316 chr2R 17169535 17169556 4 240 1.0 0.5 0.8 2.2 261 chr2R 17169295 intergenic not near genes chr2R 17169426 intergenic not near genes chr2R 17169556 intergenic not near genes chr2R_4_17165001 chr2R_17165001 RAL-287 171 chr2R 17176355 17176383 chr2R 17182544 17182551 diver 4 6183 0.5 1.0 0.8 2.2 6196 chr2R 17176355 intergenic not near genes chr2R 17179453 intergenic not near genes chr2R 17182551 intergenic not near genes chr2R_4_17175001 chr2R_17175001 RAL-287 172 chr2R 17236525 17236541 chr2R 17241716 17241745 copia 4 5200 0.5 4.0 2.2 1.2 5220 chr2R 17236525 intron mbl + chr2R 17239135 intron mbl + chr2R 17241745 intron mbl + chr2R_4_17235001 chr2R_17235001 RAL-287 173 chr2R 17281934 17281960 chr2R 17282016 17282042 5 79 1.0 0.5 0.8 2.8 108 chr2R 17281934 intron mbl + chr2R 17281988 intron mbl + chr2R 17282042 intron mbl + chr2R_5_17280001 chr2R_17280001 RAL-287 174 chr2R 17784024 17784047 chr2R 17784265 17784286 pogo 5 239 4.5 3.5 4.0 1.0 262 chr2R 17784024 intergenic mir-31a - chr2R 17784155 intergenic mir-31a - chr2R 17784286 intergenic mir-31a - chr2R_5_17780001 chr2R_17780001 RAL-287 175 chr2R 17982935 17982953 chr2R 17983010 17983038 4 79 1.0 3.0 2.0 1.3 103 chr2R 17982935 intron dpr13 - chr2R 17982986 intron dpr13 - chr2R 17983038 intron dpr13 - chr2R_4_17980001 chr2R_17980001 RAL-287 176 chr2R 17992102 17992139 chr2R 17992178 17992207 5 70 0.5 2.5 1.5 2.0 105 chr2R 17992102 intron dpr13 - chr2R 17992154 intron dpr13 - chr2R 17992207 intron dpr13 - chr2R_5_17990001 chr2R_17990001 RAL-287 177 chr2R 18289451 18289463 chr2R 18289553 18289558 4 98 1.5 4.0 2.8 1.1 107 chr2R 18289451 intron,intron sbb -,CG14502 + chr2R 18289504 intron,intron sbb -,CG14502 + chr2R 18289558 exon,intron sbb -,CG14502 + chr2R_4_18285001 chr2R_18285001 RAL-287 178 chr2R 18358394 18358422 chr2R 18372606 18372633 roo 6 14211 0.5 0.0 0.2 5.0 14239 chr2R 18358394 intergenic not near genes chr2R 18365514 intergenic not near genes chr2R 18372633 intergenic not near genes chr2R_6_18365001 chr2R_18365001 RAL-287 179 chr2R 18402501 18402531 chr2R 18402587 18402619 4 84 2.0 2.0 2.0 1.3 118 chr2R 18402501 intergenic not near genes chr2R 18402560 intergenic not near genes chr2R 18402619 intergenic not near genes chr2R_4_18400001 chr2R_18400001 RAL-287 180 chr2R 18590866 18590899 chr2R 18600017 18600050 roo 5 9152 5.0 1.5 3.2 1.2 9184 chr2R 18590866 intron GEFmeso - chr2R 18595458 intron GEFmeso - chr2R 18600050 intron GEFmeso - chr2R_5_18595001 chr2R_18595001 RAL-287 181 chr2R 18675160 18675170 chr2R 18675235 18675248 4 77 0.0 1.5 0.8 2.2 88 chr2R 18675160 intergenic not near genes chr2R 18675204 intergenic not near genes chr2R 18675248 intergenic not near genes chr2R_4_18675001 chr2R_18675001 RAL-287 182 chr2R 18726895 18727102 chr2R 18726976 18727251 6 138 2.0 2.0 2.0 2.0 356 chr2R 18726895 intron Hs3st-A + chr2R 18727073 intron Hs3st-A + chr2R 18727251 intron Hs3st-A + chr2R_6_18725001 chr2R_18725001 RAL-287 183 chr2R 18785918 18785948 chr2R 18785997 18786023 4 78 0.5 2.0 1.2 1.8 105 chr2R 18785918 intron CG15080 + chr2R 18785970 intron CG15080 + chr2R 18786023 intron CG15080 + chr2R_4_18785001 chr2R_18785001 RAL-287 184 chr2R 18880372 18880388 chr2R 18880447 18880466 5 81 0.5 1.0 0.8 2.8 94 chr2R 18880372 intron sano + chr2R 18880419 intron sano + chr2R 18880466 intron sano + chr2R_5_18880001 chr2R_18880001 RAL-287 185 chr2R 18992018 18992046 chr2R 18992159 18992185 5 140 0.0 1.5 0.8 2.8 167 chr2R 18992018 intron tn + chr2R 18992102 intron tn + chr2R 18992185 intron tn + chr2R_5_18990001 chr2R_18990001 RAL-287 186 chr2R 19331232 19331254 chr2R 19331312 19331315 5 74 5.0 5.0 5.0 0.8 83 chr2R 19331232 intron,intron Rgk1 -,CG34045 + chr2R 19331274 intron,intron Rgk1 -,CG34045 + chr2R 19331315 intron,intron Rgk1 -,CG34045 + chr2R_5_19330001 chr2R_19330001 RAL-287 187 chr2R 19334650 19334679 chr2R 19334726 19334755 4 76 3.0 1.0 2.0 1.3 105 chr2R 19334650 intron,intron Rgk1 -,CG34045 + chr2R 19334702 intron,intron Rgk1 -,CG34045 + chr2R 19334755 intron,exon Rgk1 -,CG34045 + chr2R_4_19330001 chr2R_19330001 RAL-287 188 chr2R 19680838 19680860 chr2R 19680914 19680936 4 76 1.5 1.5 1.5 1.6 98 chr2R 19680838 3` UTR CG15127 - chr2R 19680887 3` UTR CG15127 - chr2R 19680936 3` UTR CG15127 - chr2R_4_19680001 chr2R_19680001 RAL-287 189 chr2R 19776593 19776617 chr2R 19779916 19779940 jockey 4 3322 2.5 2.5 2.5 1.1 3347 chr2R 19776593 intergenic not near genes chr2R 19778266 intergenic not near genes chr2R 19779940 intergenic not near genes chr2R_4_19775001 chr2R_19775001 RAL-287 190 chr2R 19957441 19957461 chr2R 19962641 19962641 copia 4 5193 3.0 1.0 2.0 1.3 5200 chr2R 19957441 intergenic CG44623 + chr2R 19960041 intergenic not near genes chr2R 19962641 intergenic not near genes chr2R_4_19960001 chr2R_19960001 RAL-287 191 chr2R 20030995 20031021 chr2R 20031088 20031107 10 90 4.0 1.0 2.5 2.9 112 chr2R 20030995 intergenic not near genes chr2R 20031051 intergenic not near genes chr2R 20031107 intergenic not near genes chr2R_10_20030001 chr2R_20030001 RAL-287 192 chr2R 20523045 20523067 chr2R 20523150 20523178 4 106 4.5 4.0 4.2 0.8 133 chr2R 20523045 intergenic not near genes chr2R 20523112 intergenic not near genes chr2R 20523178 intergenic not near genes chr2R_4_20520001 chr2R_20520001 RAL-287 193 chr2R 21238944 21238955 chr2R 21239019 21239038 4 80 1.5 2.0 1.8 1.4 94 chr2R 21238944 intron ASPP - chr2R 21238991 intron ASPP - chr2R 21239038 intron ASPP - chr2R_4_21235001 chr2R_21235001 RAL-287 194 chr2R 21593573 21593604 chr2R 21594283 21594314 5 705 3.5 5.0 4.2 1.0 741 chr2R 21593573 intergenic not near genes chr2R 21593944 intergenic not near genes chr2R 21594314 intergenic not near genes chr2R_5_21590001 chr2R_21590001 RAL-287 195 chr2R 21738275 21738295 chr2R 21747435 21747446 roo 5 9158 1.0 1.0 1.0 2.5 9171 chr2R 21738275 intergenic not near genes chr2R 21742860 intergenic not near genes chr2R 21747446 intergenic not near genes chr2R_5_21740001 chr2R_21740001 RAL-287 196 chr2R 21753089 21753104 chr2R 21753574 21753575 roo 4 480 4.5 1.5 3.0 1.0 486 chr2R 21753089 intergenic not near genes chr2R 21753332 intergenic not near genes chr2R 21753575 intergenic not near genes chr2R_4_21750001 chr2R_21750001 RAL-287 197 chr2R 21902627 21902636 chr2R 21902699 21902713 4 76 3.0 3.0 3.0 1.0 86 chr2R 21902627 intron Fili + chr2R 21902670 intron Fili + chr2R 21902713 intron Fili + chr2R_4_21900001 chr2R_21900001 RAL-287 198 chr2R 21910408 21910435 chr2R 21910498 21910508 4 81 4.0 3.5 3.8 0.8 100 chr2R 21910408 intron Fili + chr2R 21910458 intron Fili + chr2R 21910508 intron Fili + chr2R_4_21910001 chr2R_21910001 RAL-287 199 chr2R 21932246 21932282 chr2R 21932324 21932359 6 74 0.0 1.5 0.8 3.3 113 chr2R 21932246 intron Fili + chr2R 21932302 intron Fili + chr2R 21932359 intron Fili + chr2R_6_21930001 chr2R_21930001 RAL-287 200 chr2R 22072680 22072710 chr2R 22072765 22072795 7 83 2.0 1.5 1.8 2.5 115 chr2R 22072680 intron CG11474 - chr2R 22072738 intron CG11474 - chr2R 22072795 intron CG11474 - chr2R_7_22070001 chr2R_22070001 RAL-287 201 chr2R 22124311 22124329 chr2R 22124400 22124418 4 89 2.0 0.5 1.2 1.8 107 chr2R 22124311 3` UTR mei-S332 + chr2R 22124364 3` UTR mei-S332 + chr2R 22124418 intergenic mei-S332 +,GM130 - chr2R_4_22120001 chr2R_22120001 RAL-287 202 chr2R 22185677 22185701 chr2R 22185776 22185792 4 97 1.5 0.0 0.8 2.2 115 chr2R 22185677 3` UTR MED16 + chr2R 22185734 3` UTR MED16 + chr2R 22185792 3` UTR MED16 + chr2R_4_22185001 chr2R_22185001 RAL-287 203 chr2R 22349694 22349717 chr2R 22351478 22351482 jockey 7 1780 1.5 4.5 3.0 1.8 1788 chr2R 22349694 intron Liprin-gamma - chr2R 22350588 intron Liprin-gamma - chr2R 22351482 intron Liprin-gamma - chr2R_7_22350001 chr2R_22350001 RAL-287 204 chr2R 22511915 22511939 chr2R 22512000 22512022 6 85 1.0 1.5 1.2 2.7 107 chr2R 22511915 intron px - chr2R 22511968 intron px - chr2R 22512022 intron px - chr2R_6_22510001 chr2R_22510001 RAL-287 205 chr2R 22574151 22574189 chr2R 22574234 22574268 5 77 0.0 1.5 0.8 2.8 117 chr2R 22574151 intron dnr1 - chr2R 22574210 intron dnr1 - chr2R 22574268 intron dnr1 - chr2R_5_22570001 chr2R_22570001 RAL-287 206 chr2R 22579610 22579630 chr2R 22579696 22579714 6 85 4.0 5.0 4.5 1.1 104 chr2R 22579610 intron dnr1 - chr2R 22579662 intron dnr1 - chr2R 22579714 intron dnr1 - chr2R_6_22575001 chr2R_22575001 RAL-287 207 chr2R 22723234 22723262 chr2R 22723310 22723338 6 76 0.5 1.0 0.8 3.3 104 chr2R 22723234 intron jbug - chr2R 22723286 intron jbug - chr2R 22723338 intron jbug - chr2R_6_22720001 chr2R_22720001 RAL-287 208 chr2R 22767579 22767596 chr2R 22767664 22767681 4 85 0.5 5.0 2.8 1.1 102 chr2R 22767579 intron CG42260 - chr2R 22767630 intron CG42260 - chr2R 22767681 intron CG42260 - chr2R_4_22765001 chr2R_22765001 RAL-287 209 chr2R 22774963 22774987 chr2R 22775382 22775406 jockey 6 419 3.5 1.0 2.2 1.9 443 chr2R 22774963 intron CG42260 - chr2R 22775184 intron CG42260 - chr2R 22775406 intron CG42260 - chr2R_6_22775001 chr2R_22775001 RAL-287 210 chr2R 22969304 22969327 chr2R 22971556 22971578 4 2251 12.5 17.0 14.8 0.3 2274 chr2R 22969304 intergenic not near genes chr2R 22970441 intergenic not near genes chr2R 22971578 intergenic not near genes chr2R_4_22970001 chr2R_22970001 RAL-287 211 chr2R 23061753 23061786 chr2R 23061829 23061862 7 74 3.0 2.5 2.8 1.8 109 chr2R 23061753 3` UTR l(2)06496 - chr2R 23061808 3` UTR l(2)06496 - chr2R 23061862 3` UTR l(2)06496 - chr2R_7_23060001 chr2R_23060001 RAL-287 212 chr2R 23243276 23243376 chr2R 23243351 23243459 6 83 0.0 0.0 0.0 6.0 183 chr2R 23243276 intergenic not near genes chr2R 23243368 intergenic not near genes chr2R 23243459 intergenic not near genes chr2R_6_23240001 chr2R_23240001 RAL-287 213 chr2R 23346532 23346554 chr2R 23346608 23346630 5 75 0.5 3.0 1.8 1.8 98 chr2R 23346532 intron CG3502 - chr2R 23346581 intron CG3502 - chr2R 23346630 intron CG3502 - chr2R_5_23345001 chr2R_23345001 RAL-287 214 chr2R 23427783 23427791 chr2R 23427910 23427911 6 135 3.5 2.5 3.0 1.5 128 chr2R 23427783 intron CG9815 - chr2R 23427847 intron CG9815 - chr2R 23427911 intron CG9815 - chr2R_6_23425001 chr2R_23425001 RAL-287 215 chr2R 24008418 24008443 chr2R 24008504 24008523 5 84 2.5 4.0 3.2 1.2 105 chr2R 24008418 intron Unc-89 - chr2R 24008470 intron Unc-89 - chr2R 24008523 intron Unc-89 - chr2R_5_24005001 chr2R_24005001 RAL-287 216 chr2R 24303888 24303919 chr2R 24303972 24304002 11 81 0.5 1.0 0.8 6.1 114 chr2R 24303888 intergenic not near genes chr2R 24303945 intergenic not near genes chr2R 24304002 intergenic not near genes chr2R_11_24300001 chr2R_24300001 RAL-287 217 chr2R 24488249 24488250 chr2R 24490132 24490163 8 1891 18.0 13.0 15.5 0.5 1914 chr2R 24488249 intron CG13579 + chr2R 24489206 exon CG13579 + chr2R 24490163 3` UTR CG13579 + chr2R_8_24485001 chr2R_24485001 RAL-287 218 chr2R 24636904 24636920 chr2R 24636990 24637004 4 85 2.0 0.5 1.2 1.8 100 chr2R 24636904 intron CG13594 - chr2R 24636954 intron CG13594 - chr2R 24637004 intron CG13594 - chr2R_4_24635001 chr2R_24635001 RAL-287 219 chr2R 24647602 24647618 chr2R 24655148 24655154 412 5 7551 0.5 3.0 1.8 1.8 7552 chr2R 24647602 intergenic not near genes chr2R 24651378 intergenic not near genes chr2R 24655154 intergenic not near genes chr2R_5_24650001 chr2R_24650001 RAL-287 220 chr2R 24707843 24707865 chr2R 24707918 24707943 4 76 4.0 5.0 4.5 0.7 100 chr2R 24707843 intron Mid1 - chr2R 24707893 intron Mid1 - chr2R 24707943 intron Mid1 - chr2R_4_24705001 chr2R_24705001 RAL-287 221 chr2R 24710365 24710389 chr2R 24714215 24714248 4 3852 22.0 9.5 15.8 0.2 3883 chr2R 24710365 intron Mid1 - chr2R 24712306 intron Mid1 - chr2R 24714248 intron Mid1 - chr2R_4_24710001 chr2R_24710001 RAL-287 222 chr2R 24724192 24724218 chr2R 24724677 24724704 4 484 2.5 0.5 1.5 1.6 512 chr2R 24724192 intron Mid1 - chr2R 24724448 intron Mid1 - chr2R 24724704 intron Mid1 - chr2R_4_24720001 chr2R_24720001 RAL-287 223 chr2R 24727882 24727918 chr2R 24735390 24735400 mdg1 10 7498 3.5 3.0 3.2 2.4 7518 chr2R 24727882 intron Mid1 - chr2R 24731641 intron Mid1 - chr2R 24735400 intron Mid1 - chr2R_10_24730001 chr2R_24730001 RAL-287 224 chr2R 24848658 24848684 chr2R 24848742 24848764 5 83 1.5 2.5 2.0 1.7 106 chr2R 24848658 intergenic CG3650 + chr2R 24848711 intergenic CG3650 + chr2R 24848764 intergenic CG3650 + chr2R_5_24845001 chr2R_24845001 RAL-287 225 chr2R 25061344 25061363 chr2R 25061427 25061443 4 82 3.5 2.0 2.8 1.1 99 chr2R 25061344 intergenic not near genes chr2R 25061394 intergenic not near genes chr2R 25061443 intergenic not near genes chr2R_4_25060001 chr2R_25060001 RAL-287 226 chr2R 25101286 25101298 chr2R 25101385 25101400 6 101 1.5 4.0 2.8 1.6 114 chr2R 25101286 intron lov - chr2R 25101343 intron lov - chr2R 25101400 intron lov - chr2R_6_25100001 chr2R_25100001 RAL-287 227 chr3L 482272 482300 chr3L 482350 482379 8 77 2.5 1.5 2.0 2.7 107 chr3L 482272 intron klar - chr3L 482326 intron klar - chr3L 482379 intron klar - chr3L_8_480001 chr3L_480001 RAL-287 228 chr3L 875662 875687 chr3L 875747 875774 4 84 1.5 1.5 1.5 1.6 112 chr3L 875662 intron CG32479 + chr3L 875718 intron CG32479 + chr3L 875774 intron CG32479 + chr3L_4_875001 chr3L_875001 RAL-287 229 chr3L 925185 925199 chr3L 932611 932625 mdg1 4 7425 2.0 3.0 2.5 1.1 7440 chr3L 925185 intron Glut1 + chr3L 928905 intron Glut1 + chr3L 932625 intron Glut1 + chr3L_4_925001 chr3L_925001 RAL-287 230 chr3L 933924 933942 chr3L 934026 934045 4 102 0.5 2.5 1.5 1.6 121 chr3L 933924 intron Glut1 + chr3L 933984 intron Glut1 + chr3L 934045 intron Glut1 + chr3L_4_930001 chr3L_930001 RAL-287 231 chr3L 939778 939801 chr3L 940897 940904 jockey 7 1117 1.0 2.5 1.8 2.5 1126 chr3L 939778 intron Glut1 + chr3L 940341 intron Glut1 + chr3L 940904 intron Glut1 + chr3L_7_940001 chr3L_940001 RAL-287 232 chr3L 1154131 1154163 chr3L 1163281 1163305 roo 5 9144 1.5 2.5 2.0 1.7 9174 chr3L 1154131 intron bab2 - chr3L 1158718 intron bab2 - chr3L 1163305 intron bab2 - chr3L_5_1155001 chr3L_1155001 RAL-287 233 chr3L 1189630 1189656 chr3L 1189714 1189717 5 80 3.0 2.5 2.8 1.3 87 chr3L 1189630 5` UTR CG13912 + chr3L 1189674 5` UTR CG13912 + chr3L 1189717 5` UTR CG13912 + chr3L_5_1185001 chr3L_1185001 RAL-287 234 chr3L 1415778 1415808 chr3L 1415859 1415860 5 74 3.0 2.5 2.8 1.3 82 chr3L 1415778 intron Ptp61F - chr3L 1415819 intron Ptp61F - chr3L 1415860 intron Ptp61F - chr3L_5_1415001 chr3L_1415001 RAL-287 235 chr3L 1463416 1463437 chr3L 1463496 1463518 5 77 2.5 3.0 2.8 1.3 102 chr3L 1463416 intron Ptp61F - chr3L 1463467 intron Ptp61F - chr3L 1463518 intron Ptp61F - chr3L_5_1460001 chr3L_1460001 RAL-287 236 chr3L 1581156 1581160 chr3L 1581489 1581489 4 332 1.0 4.5 2.8 1.1 333 chr3L 1581156 intron CG13917 + chr3L 1581322 intron CG13917 + chr3L 1581489 intron CG13917 + chr3L_4_1580001 chr3L_1580001 RAL-287 237 chr3L 1581161 1581183 chr3L 1581484 1581517 5 329 1.0 4.0 2.5 1.4 356 chr3L 1581161 intron CG13917 + chr3L 1581339 intron CG13917 + chr3L 1581517 intron CG13917 + chr3L_5_1580001 chr3L_1580001 RAL-287 238 chr3L 2168790 2168802 chr3L 2168861 2168893 6 85 2.5 2.0 2.2 1.9 103 chr3L 2168790 intron CG15879 - chr3L 2168842 intron CG15879 - chr3L 2168893 intron CG15879 - chr3L_6_2165001 chr3L_2165001 RAL-287 239 chr3L 2479014 2479036 chr3L 2479111 2479132 5 95 1.0 1.5 1.2 2.3 118 chr3L 2479014 intron CG45186 + chr3L 2479073 intron CG45186 + chr3L 2479132 intron CG45186 + chr3L_5_2475001 chr3L_2475001 RAL-287 240 chr3L 2534622 2534640 chr3L 2534703 2534719 10 81 0.5 3.5 2.0 3.3 97 chr3L 2534622 intron Spn - chr3L 2534670 intron Spn - chr3L 2534719 exon Spn - chr3L_10_2530001 chr3L_2530001 RAL-287 241 chr3L 2631064 2631080 chr3L 2631174 2631190 5 109 4.0 3.0 3.5 1.1 126 chr3L 2631064 intergenic CR45660 - chr3L 2631127 intergenic CR45660 - chr3L 2631190 intergenic CR45660 - chr3L_5_2630001 chr3L_2630001 RAL-287 242 chr3L 2683957 2683978 chr3L 2684032 2684054 4 74 1.0 3.5 2.2 1.2 97 chr3L 2683957 intron Fife - chr3L 2684006 intron Fife - chr3L 2684054 intron Fife - chr3L_4_2680001 chr3L_2680001 RAL-287 243 chr3L 3281458 3281472 chr3L 3281931 3281932 Doc 5 480 2.5 4.0 3.2 1.2 474 chr3L 3281458 intron CG12017 + chr3L 3281695 intron CG12017 + chr3L 3281932 intron CG12017 + chr3L_5_3280001 chr3L_3280001 RAL-287 244 chr3L 3450914 3450943 chr3L 3451002 3451030 6 85 2.5 2.0 2.2 1.9 116 chr3L 3450914 intron eIF5B - chr3L 3450972 intron eIF5B - chr3L 3451030 intron eIF5B - chr3L_6_3450001 chr3L_3450001 RAL-287 245 chr3L 3565952 3565972 chr3L 3566014 3566030 5 65 3.0 1.0 2.0 1.7 78 chr3L 3565952 intron Eip63E + chr3L 3565991 intron Eip63E + chr3L 3566030 intron Eip63E + chr3L_5_3565001 chr3L_3565001 RAL-287 246 chr3L 3601299 3601324 chr3L 3606610 3606616 copia 4 5305 1.5 1.0 1.2 1.8 5317 chr3L 3601299 intron Eip63E + chr3L 3603958 intron Eip63E + chr3L 3606616 intron Eip63E + chr3L_4_3600001 chr3L_3600001 RAL-287 247 chr3L 4342410 4342441 chr3L 4342489 4342507 5 72 1.5 4.0 2.8 1.3 97 chr3L 4342410 intron Cip4 - chr3L 4342458 intron Cip4 - chr3L 4342507 intron Cip4 - chr3L_5_4340001 chr3L_4340001 RAL-287 248 chr3L 4825563 4825576 chr3L 4825645 4825656 4 79 3.5 2.5 3.0 1.0 93 chr3L 4825563 exon Dhc64C - chr3L 4825610 5` UTR Dhc64C - chr3L 4825656 5` UTR Dhc64C - chr3L_4_4825001 chr3L_4825001 RAL-287 249 chr3L 4901132 4901160 chr3L 4907322 4907335 diver 4 6184 2.0 2.0 2.0 1.3 6203 chr3L 4901132 intergenic CG13704 + chr3L 4904234 intergenic not near genes chr3L 4907335 intergenic not near genes chr3L_4_4900001 chr3L_4900001 RAL-287 250 chr3L 4914798 4914818 chr3L 4915044 4915062 5 245 3.0 2.0 2.5 1.4 264 chr3L 4914798 intron Rh50 + chr3L 4914930 intron Rh50 + chr3L 4915062 intron Rh50 + chr3L_5_4910001 chr3L_4910001 RAL-287 251 chr3L 5030767 5030799 chr3L 5030842 5030874 9 75 1.5 2.5 2.0 3.0 107 chr3L 5030767 intron Con - chr3L 5030820 intron Con - chr3L 5030874 intron Con - chr3L_9_5030001 chr3L_5030001 RAL-287 252 chr3L 5388207 5388231 chr3L 5388531 5388540 6 321 3.0 4.5 3.8 1.2 333 chr3L 5388207 intergenic not near genes chr3L 5388374 intergenic not near genes chr3L 5388540 intergenic not near genes chr3L_6_5385001 chr3L_5385001 RAL-287 253 chr3L 5476183 5476211 chr3L 5476261 5476289 7 78 3.5 4.5 4.0 1.4 106 chr3L 5476183 intergenic not near genes chr3L 5476236 intergenic not near genes chr3L 5476289 intergenic not near genes chr3L_7_5475001 chr3L_5475001 RAL-287 254 chr3L 5483066 5483087 chr3L 5483185 5483206 4 118 3.0 9.0 6.0 0.6 140 chr3L 5483066 exon CG4835 + chr3L 5483136 exon CG4835 + chr3L 5483206 exon CG4835 + chr3L_4_5480001 chr3L_5480001 RAL-287 255 chr3L 5826149 5826165 chr3L 5826230 5826246 9 81 4.0 2.5 3.2 2.1 97 chr3L 5826149 intron vn - chr3L 5826198 intron vn - chr3L 5826246 intron vn - chr3L_9_5825001 chr3L_5825001 RAL-287 256 chr3L 5926316 5926345 chr3L 5926506 5926507 8 185 2.5 3.0 2.8 2.1 191 chr3L 5926316 intron Vap-33B + chr3L 5926412 intron Vap-33B + chr3L 5926507 intron Vap-33B + chr3L_8_5925001 chr3L_5925001 RAL-287 257 chr3L 5983832 5983860 chr3L 5983953 5983960 4 112 2.5 0.0 1.2 1.8 128 chr3L 5983832 3` UTR CR45439 - chr3L 5983896 intergenic CR45439 -,CR45440 - chr3L 5983960 intergenic CR45439 -,CR45440 - chr3L_4_5980001 chr3L_5980001 RAL-287 258 chr3L 6621780 6621792 chr3L 6621936 6621948 4 155 1.5 0.5 1.0 2.0 168 chr3L 6621780 intergenic not near genes chr3L 6621864 intergenic not near genes chr3L 6621948 intergenic not near genes chr3L_4_6620001 chr3L_6620001 RAL-287 259 chr3L 7101337 7101358 chr3L 7101424 7101451 6 90 1.0 1.0 1.0 3.0 114 chr3L 7101337 intron form3 + chr3L 7101394 intron form3 + chr3L 7101451 intron form3 + chr3L_6_7100001 chr3L_7100001 RAL-287 260 chr3L 7332469 7332499 chr3L 7332539 7332572 6 66 2.5 3.0 2.8 1.6 103 chr3L 7332469 3` UTR,3` UTR CG42307 +,mus312 + chr3L 7332520 3` UTR,3` UTR CG42307 +,mus312 + chr3L 7332572 3` UTR,3` UTR CG42307 +,mus312 + chr3L_6_7330001 chr3L_7330001 RAL-287 261 chr3L 7355720 7355727 chr3L 7363627 7363646 6 7912 20.0 23.0 21.5 0.3 7926 chr3L 7355720 exon CTCF - chr3L 7359683 exon pst - chr3L 7363646 exon Sec63 + chr3L_6_7355001 chr3L_7355001 RAL-287 262 chr3L 7377315 7377349 chr3L 7380420 7380453 297 6 3101 0.5 3.5 2.0 2.0 3138 chr3L 7377315 intron SMSr - chr3L 7378884 intron SMSr - chr3L 7380453 intron SMSr - chr3L_6_7375001 chr3L_7375001 RAL-287 263 chr3L 7498764 7498783 chr3L 7503528 7503560 F-element 4 4774 2.5 0.5 1.5 1.6 4796 chr3L 7498764 5` UTR CG8539 - chr3L 7501162 intergenic not near genes chr3L 7503560 intergenic not near genes chr3L_4_7500001 chr3L_7500001 RAL-287 264 chr3L 7886515 7886530 chr3L 7889033 7889046 Stalker4 5 2514 1.0 2.0 1.5 2.0 2531 chr3L 7886515 intron CG32365 + chr3L 7887780 intron CG32365 + chr3L 7889046 intron CG32365 + chr3L_5_7885001 chr3L_7885001 RAL-287 265 chr3L 8243828 8243850 chr3L 8243911 8243933 5 83 3.5 3.0 3.2 1.2 105 chr3L 8243828 intron Dscam4 + chr3L 8243880 intron Dscam4 + chr3L 8243933 intron Dscam4 + chr3L_5_8240001 chr3L_8240001 RAL-287 266 chr3L 8285461 8285494 chr3L 8285568 8285601 6 102 1.0 3.0 2.0 2.0 140 chr3L 8285461 intron cert - chr3L 8285531 intron cert - chr3L 8285601 intron cert - chr3L_6_8285001 chr3L_8285001 RAL-287 267 chr3L 8782128 8782154 chr3L 8782254 8782280 4 125 1.0 3.5 2.2 1.2 152 chr3L 8782128 intron Fhos + chr3L 8782204 intron Fhos + chr3L 8782280 intron Fhos + chr3L_4_8780001 chr3L_8780001 RAL-287 268 chr3L 8791277 8791288 chr3L 8796697 8796707 I-element 5 5419 4.5 0.0 2.2 1.6 5430 chr3L 8791277 exon Fhos + chr3L 8793992 intron Fhos + chr3L 8796707 intron Fhos + chr3L_5_8790001 chr3L_8790001 RAL-287 269 chr3L 9076930 9076955 chr3L 9084487 9084514 412 7 7556 2.0 2.5 2.2 2.2 7584 chr3L 9076930 exon Tequila + chr3L 9080722 intron Tequila + chr3L 9084514 exon Tequila + chr3L_7_9080001 chr3L_9080001 RAL-287 270 chr3L 9130556 9130578 chr3L 9134317 9134338 412 5 3760 4.0 1.5 2.8 1.3 3782 chr3L 9130556 intergenic bol - chr3L 9132447 intergenic not near genes chr3L 9134338 intergenic Dhpr + chr3L_5_9130001 chr3L_9130001 RAL-287 271 chr3L 9219244 9219268 chr3L 9219916 9219940 jockey 4 667 4.0 1.5 2.8 1.1 696 chr3L 9219244 intergenic not near genes chr3L 9219592 intergenic not near genes chr3L 9219940 intergenic not near genes chr3L_4_9215001 chr3L_9215001 RAL-287 272 chr3L 9270615 9270647 chr3L 9278370 9278401 roo 6 7749 2.5 2.0 2.2 1.9 7786 chr3L 9270615 intron GluRIB + chr3L 9274508 intron GluRIB + chr3L 9278401 exon GluRIB + chr3L_6_9270001 chr3L_9270001 RAL-287 273 chr3L 9344207 9344223 chr3L 9344281 9344301 6 76 0.0 2.0 1.0 3.0 94 chr3L 9344207 intron PGRP-LC + chr3L 9344254 intron PGRP-LC + chr3L 9344301 intron PGRP-LC + chr3L_6_9340001 chr3L_9340001 RAL-287 274 chr3L 9390851 9390862 chr3L 9390980 9390992 6 130 3.0 0.5 1.8 2.1 141 chr3L 9390851 intron CG4080 - chr3L 9390922 intron CG4080 - chr3L 9390992 intron CG4080 - chr3L_6_9390001 chr3L_9390001 RAL-287 275 chr3L 9797236 9797270 chr3L 9797325 9797337 5 70 0.0 0.0 0.0 5.0 101 chr3L 9797236 intron Zasp67 - chr3L 9797286 intron Zasp67 - chr3L 9797337 intron Zasp67 - chr3L_5_9795001 chr3L_9795001 RAL-287 276 chr3L 9918880 9918908 chr3L 9918975 9918976 8 91 2.0 1.5 1.8 2.9 96 chr3L 9918880 intron CG34356 + chr3L 9918928 intron CG34356 + chr3L 9918976 intron CG34356 + chr3L_8_9915001 chr3L_9915001 RAL-287 277 chr3L 9929666 9929695 chr3L 9938444 9938447 roo 4 8770 1.5 2.5 2.0 1.3 8781 chr3L 9929666 intron CG34356 + chr3L 9934056 intron CG34356 + chr3L 9938447 intron CG34356 + chr3L_4_9930001 chr3L_9930001 RAL-287 278 chr3L 10035215 10035245 chr3L 10035302 10035332 7 81 0.5 2.5 1.5 2.8 117 chr3L 10035215 intron dpr6 + chr3L 10035274 intron dpr6 + chr3L 10035332 intron dpr6 + chr3L_7_10035001 chr3L_10035001 RAL-287 279 chr3L 10308745 10308769 chr3L 10308817 10308833 4 69 1.5 2.5 2.0 1.3 88 chr3L 10308745 intergenic not near genes chr3L 10308789 intergenic not near genes chr3L 10308833 intergenic not near genes chr3L_4_10305001 chr3L_10305001 RAL-287 280 chr3L 10414938 10414978 chr3L 10417310 10417312 Doc 6 2361 1.0 0.5 0.8 3.3 2374 chr3L 10414938 intergenic CG12362 + chr3L 10416125 intergenic not near genes chr3L 10417312 intergenic not near genes chr3L_6_10415001 chr3L_10415001 RAL-287 281 chr3L 10417569 10417605 chr3L 10417646 10417679 5 75 2.0 2.0 2.0 1.7 110 chr3L 10417569 intergenic not near genes chr3L 10417624 intergenic not near genes chr3L 10417679 intergenic not near genes chr3L_5_10415001 chr3L_10415001 RAL-287 282 chr3L 11105297 11105323 chr3L 11107007 11107034 X-element 4 1710 0.5 2.0 1.2 1.8 1737 chr3L 11105297 intergenic not near genes chr3L 11106166 intergenic not near genes chr3L 11107034 exon CG32073 - chr3L_4_11105001 chr3L_11105001 RAL-287 283 chr3L 11339960 11339983 chr3L 11340041 11340065 4 81 0.5 0.0 0.2 3.3 105 chr3L 11339960 intergenic not near genes chr3L 11340012 intergenic not near genes chr3L 11340065 intergenic not near genes chr3L_4_11340001 chr3L_11340001 RAL-287 284 chr3L 11383994 11383997 chr3L 11384042 11384053 5 63 1.5 2.0 1.8 1.8 59 chr3L 11383994 3` UTR CR42755 - chr3L 11384024 3` UTR CR42755 - chr3L 11384053 3` UTR CR42755 - chr3L_5_11380001 chr3L_11380001 RAL-287 285 chr3L 11409455 11409470 chr3L 11409763 11409792 4 307 3.0 0.0 1.5 1.6 337 chr3L 11409455 intergenic not near genes chr3L 11409624 intergenic not near genes chr3L 11409792 intergenic not near genes chr3L_4_11405001 chr3L_11405001 RAL-287 286 chr3L 11744028 11744039 chr3L 11744136 11744147 4 108 4.5 1.0 2.8 1.1 119 chr3L 11744028 exon CG6024 - chr3L 11744088 intron CG6024 - chr3L 11744147 intron CG6024 - chr3L_4_11740001 chr3L_11740001 RAL-287 287 chr3L 11864556 11864577 chr3L 11865851 11865872 pogo 9 1294 1.0 2.5 1.8 3.2 1316 chr3L 11864556 intron CG44837 - chr3L 11865214 intron CG44837 - chr3L 11865872 intron CG44837 - chr3L_9_11865001 chr3L_11865001 RAL-287 288 chr3L 12012302 12012328 chr3L 12012381 12012407 8 76 1.0 2.0 1.5 3.2 105 chr3L 12012302 intron rols - chr3L 12012354 intron rols - chr3L 12012407 intron rols - chr3L_8_12010001 chr3L_12010001 RAL-287 289 chr3L 12089081 12089111 chr3L 12089161 12089191 5 80 2.0 0.0 1.0 2.5 110 chr3L 12089081 3` UTR CG17154 + chr3L 12089136 3` UTR CG17154 + chr3L 12089191 3` UTR CG17154 + chr3L_5_12085001 chr3L_12085001 RAL-287 290 chr3L 12284886 12284906 chr3L 12285031 12285040 4 140 3.0 2.0 2.5 1.1 154 chr3L 12284886 intergenic not near genes chr3L 12284963 intergenic not near genes chr3L 12285040 intergenic not near genes chr3L_4_12280001 chr3L_12280001 RAL-287 291 chr3L 12304092 12304111 chr3L 12304167 12304167 5 70 1.5 2.5 2.0 1.7 75 chr3L 12304092 intergenic not near genes chr3L 12304130 intergenic not near genes chr3L 12304167 intergenic not near genes chr3L_5_12300001 chr3L_12300001 RAL-287 292 chr3L 12933092 12933126 chr3L 12933173 12933193 9 77 1.5 4.0 2.8 2.4 101 chr3L 12933092 intergenic not near genes chr3L 12933142 intergenic not near genes chr3L 12933193 intergenic not near genes chr3L_9_12930001 chr3L_12930001 RAL-287 293 chr3L 13074038 13074069 chr3L 13074171 13074202 6 130 2.5 1.0 1.8 2.1 164 chr3L 13074038 intergenic not near genes chr3L 13074120 intergenic not near genes chr3L 13074202 intergenic not near genes chr3L_6_13070001 chr3L_13070001 RAL-287 294 chr3L 13338284 13338313 chr3L 13338378 13338408 4 92 3.0 2.0 2.5 1.1 124 chr3L 13338284 intergenic not near genes chr3L 13338346 intergenic not near genes chr3L 13338408 intergenic not near genes chr3L_4_13335001 chr3L_13335001 RAL-287 295 chr3L 13525158 13525188 chr3L 13532954 13532984 roo 4 7795 1.0 3.0 2.0 1.3 7826 chr3L 13525158 intergenic not near genes chr3L 13529071 intergenic not near genes chr3L 13532984 intergenic not near genes chr3L_4_13525001 chr3L_13525001 RAL-287 296 chr3L 14141756 14141765 chr3L 14141846 14141855 4 90 2.5 0.5 1.5 1.6 99 chr3L 14141756 intergenic not near genes chr3L 14141806 intergenic not near genes chr3L 14141855 intergenic not near genes chr3L_4_14140001 chr3L_14140001 RAL-287 297 chr3L 14245567 14245594 chr3L 14245660 14245688 1360 6 93 1.0 2.5 1.8 2.1 121 chr3L 14245567 3` UTR CR44561 - chr3L 14245628 3` UTR CR44561 - chr3L 14245688 3` UTR CR44561 - chr3L_6_14245001 chr3L_14245001 RAL-287 298 chr3L 14295995 14296009 chr3L 14296471 14296492 roo 5 478 4.0 4.0 4.0 1.0 497 chr3L 14295995 intron fz + chr3L 14296244 intron fz + chr3L 14296492 intron fz + chr3L_5_14295001 chr3L_14295001 RAL-287 299 chr3L 14721184 14721210 chr3L 14723026 14723049 Rt1c 4 1841 3.0 5.0 4.0 0.8 1865 chr3L 14721184 intron ome + chr3L 14722116 intron ome + chr3L 14723049 intron ome + chr3L_4_14720001 chr3L_14720001 RAL-287 300 chr3L 15259104 15259126 chr3L 15260094 15260095 6 986 2.0 2.0 2.0 2.0 991 chr3L 15259104 intergenic not near genes chr3L 15259600 intergenic not near genes chr3L 15260095 intergenic not near genes chr3L_6_15255001 chr3L_15255001 RAL-287 301 chr3L 16184122 16184130 chr3L 16188940 16188949 X-element 4 4819 1.0 2.5 1.8 1.4 4827 chr3L 16184122 intergenic not near genes chr3L 16186536 intergenic not near genes chr3L 16188949 intergenic not near genes chr3L_4_16185001 chr3L_16185001 RAL-287 302 chr3L 16493974 16494006 chr3L 16494491 16494523 jockey 8 512 2.0 1.5 1.8 2.9 549 chr3L 16493974 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494248 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494523 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_8_16490001 chr3L_16490001 RAL-287 303 chr3L 16941409 16941427 chr3L 16941508 16941527 6 100 2.0 0.0 1.0 3.0 118 chr3L 16941409 intron Cpr73D - chr3L 16941468 intron Cpr73D - chr3L 16941527 intron Cpr73D - chr3L_6_16940001 chr3L_16940001 RAL-287 304 chr3L 16945732 16945756 chr3L 16954880 16954908 roo 4 9148 3.0 2.0 2.5 1.1 9176 chr3L 16945732 exon Obp73a + chr3L 16950320 intergenic not near genes chr3L 16954908 5` UTR Nc73EF + chr3L_4_16950001 chr3L_16950001 RAL-287 305 chr3L 16969427 16969441 chr3L 16969653 16969667 5 225 3.0 2.5 2.8 1.3 240 chr3L 16969427 intergenic not near genes chr3L 16969547 intergenic Exn + chr3L 16969667 intergenic Exn + chr3L_5_16965001 chr3L_16965001 RAL-287 306 chr3L 16971219 16971239 chr3L 16971297 16971317 8 77 1.0 0.5 0.8 4.4 98 chr3L 16971219 intron Exn + chr3L 16971268 intron Exn + chr3L 16971317 intron Exn + chr3L_8_16970001 chr3L_16970001 RAL-287 307 chr3L 17327598 17327616 chr3L 17327678 17327705 5 86 3.0 5.0 4.0 1.0 107 chr3L 17327598 intergenic Or74a - chr3L 17327652 intergenic Or74a - chr3L 17327705 intergenic Or74a - chr3L_5_17325001 chr3L_17325001 RAL-287 308 chr3L 17537018 17537048 chr3L 17537099 17537129 5 81 1.0 2.5 1.8 1.8 111 chr3L 17537018 intron Nedd4 + chr3L 17537074 intron Nedd4 + chr3L 17537129 intron Nedd4 + chr3L_5_17535001 chr3L_17535001 RAL-287 309 chr3L 17580585 17580598 chr3L 17580761 17580774 4 174 2.5 0.0 1.2 1.8 189 chr3L 17580585 intron Eip74EF - chr3L 17580680 intron Eip74EF - chr3L 17580774 intron Eip74EF - chr3L_4_17580001 chr3L_17580001 RAL-287 310 chr3L 17636105 17636125 chr3L 17636252 17636267 5 146 0.5 3.0 1.8 1.8 162 chr3L 17636105 intron CG7497 + chr3L 17636186 intron CG7497 + chr3L 17636267 intron CG7497 + chr3L_5_17635001 chr3L_17635001 RAL-287 311 chr3L 17789844 17789869 chr3L 17789919 17789944 5 73 0.5 0.0 0.2 4.2 100 chr3L 17789844 intergenic not near genes chr3L 17789894 intergenic not near genes chr3L 17789944 intergenic not near genes chr3L_5_17785001 chr3L_17785001 RAL-287 312 chr3L 18092791 18092804 chr3L 18092906 18092919 4 114 1.0 0.0 0.5 2.7 128 chr3L 18092791 intron CG13698 - chr3L 18092855 intron CG13698 - chr3L 18092919 intron CG13698 - chr3L_4_18090001 chr3L_18090001 RAL-287 313 chr3L 18528633 18528660 chr3L 18537794 18537821 roo 4 9156 1.0 0.5 0.8 2.2 9188 chr3L 18528633 intergenic not near genes chr3L 18533227 intergenic not near genes chr3L 18537821 intergenic not near genes chr3L_4_18530001 chr3L_18530001 RAL-287 314 chr3L 18677887 18677906 chr3L 18677982 18677992 4 92 1.0 3.5 2.2 1.2 105 chr3L 18677887 intergenic GNBP1 + chr3L 18677940 intergenic GNBP1 + chr3L 18677992 intergenic GNBP1 + chr3L_4_18675001 chr3L_18675001 RAL-287 315 chr3L 19008848 19008871 chr3L 19009184 19009201 jockey 4 335 3.0 3.5 3.2 1.0 353 chr3L 19008848 intron nkd - chr3L 19009024 intron nkd - chr3L 19009201 intron nkd - chr3L_4_19005001 chr3L_19005001 RAL-287 316 chr3L 19117040 19117076 chr3L 19124487 19124523 mdg1 5 7446 3.0 4.0 3.5 1.1 7483 chr3L 19117040 intron CG14082 - chr3L 19120782 intron CG14082 - chr3L 19124523 intron CG14082 - chr3L_5_19120001 chr3L_19120001 RAL-287 317 chr3L 19137607 19137629 chr3L 19137726 19137748 4 118 1.5 4.0 2.8 1.1 141 chr3L 19137607 intron CG14082 - chr3L 19137678 intron CG14082 - chr3L 19137748 intron CG14082 - chr3L_4_19135001 chr3L_19135001 RAL-287 318 chr3L 19182387 19182417 chr3L 19182467 19182498 4 80 0.0 1.5 0.8 2.2 111 chr3L 19182387 intron fz2 - chr3L 19182442 intron fz2 - chr3L 19182498 intron fz2 - chr3L_4_19180001 chr3L_19180001 RAL-287 319 chr3L 19208063 19208089 chr3L 19209432 19209463 Doc 6 1373 2.5 3.5 3.0 1.5 1400 chr3L 19208063 intron fz2 - chr3L 19208763 intron fz2 - chr3L 19209463 intron fz2 - chr3L_6_19205001 chr3L_19205001 RAL-287 320 chr3L 19564968 19564983 chr3L 19565061 19565077 4 94 1.5 1.5 1.5 1.6 109 chr3L 19564968 intergenic mir-9a + chr3L 19565022 intergenic mir-9a + chr3L 19565077 intergenic mir-9a + chr3L_4_19565001 chr3L_19565001 RAL-287 321 chr3L 19848511 19848535 chr3L 19857701 19857725 roo 5 9189 1.5 1.0 1.2 2.3 9214 chr3L 19848511 intron Papss + chr3L 19853118 intron Papss + chr3L 19857725 intron Papss + chr3L_5_19850001 chr3L_19850001 RAL-287 322 chr3L 20148284 20148318 chr3L 20148374 20148391 9 85 1.0 4.5 2.8 2.4 107 chr3L 20148284 intergenic not near genes chr3L 20148338 intergenic not near genes chr3L 20148391 intergenic not near genes chr3L_9_20145001 chr3L_20145001 RAL-287 323 chr3L 20283396 20283404 chr3L 20283475 20283483 4 78 1.0 7.0 4.0 0.8 87 chr3L 20283396 intron gogo - chr3L 20283440 intron gogo - chr3L 20283483 intron gogo - chr3L_4_20280001 chr3L_20280001 RAL-287 324 chr3L 20476753 20476785 chr3L 20484352 20484383 springer 5 7599 0.5 0.0 0.2 4.2 7630 chr3L 20476753 3` UTR isoQC + chr3L 20480568 intergenic not near genes chr3L 20484383 3` UTR ZnT77C - chr3L_5_20480001 chr3L_20480001 RAL-287 325 chr3L 20487663 20487672 chr3L 20488114 20488123 INE-1 6 451 2.0 0.0 1.0 3.0 460 chr3L 20487663 intron ZnT77C - chr3L 20487893 intron ZnT77C - chr3L 20488123 intron ZnT77C - chr3L_6_20485001 chr3L_20485001 RAL-287 326 chr3L 20710762 20710786 chr3L 20710839 20710863 4 74 1.5 1.0 1.2 1.8 101 chr3L 20710762 intergenic not near genes chr3L 20710812 intergenic not near genes chr3L 20710863 intergenic not near genes chr3L_4_20710001 chr3L_20710001 RAL-287 327 chr3L 21406999 21407009 chr3L 21407078 21407086 4 78 2.0 1.5 1.8 1.4 87 chr3L 21406999 intron rgn + chr3L 21407042 intron rgn + chr3L 21407086 intron rgn + chr3L_4_21405001 chr3L_21405001 RAL-287 328 chr3L 21408467 21408487 chr3L 21408545 21408565 4 78 1.0 1.5 1.2 1.8 98 chr3L 21408467 intron rgn + chr3L 21408516 intron rgn + chr3L 21408565 intron rgn + chr3L_4_21405001 chr3L_21405001 RAL-287 329 chr3L 21749325 21749348 chr3L 21754478 21754482 Doc 4 5152 3.0 2.0 2.5 1.1 5157 chr3L 21749325 intron Syn1 - chr3L 21751904 intron Syn1 - chr3L 21754482 intron Syn1 - chr3L_4_21750001 chr3L_21750001 RAL-287 330 chr3L 21847426 21847454 chr3L 21847522 21847550 7 96 3.5 1.0 2.2 2.2 124 chr3L 21847426 intron mub + chr3L 21847488 intron mub + chr3L 21847550 intron mub + chr3L_7_21845001 chr3L_21845001 RAL-287 331 chr3L 21872423 21872452 chr3L 21872502 21872504 6 74 1.0 1.0 1.0 3.0 81 chr3L 21872423 intron mub + chr3L 21872464 intron mub + chr3L 21872504 intron mub + chr3L_6_21870001 chr3L_21870001 RAL-287 332 chr3L 21905335 21905351 chr3L 21905414 21905414 5 76 6.5 1.5 4.0 1.0 79 chr3L 21905335 intron mub + chr3L 21905374 intron mub + chr3L 21905414 intron mub + chr3L_5_21905001 chr3L_21905001 RAL-287 333 chr3L 22124814 22124839 chr3L 22124897 22124922 4 81 1.0 3.5 2.2 1.2 108 chr3L 22124814 intergenic not near genes chr3L 22124868 intergenic not near genes chr3L 22124922 intergenic not near genes chr3L_4_22120001 chr3L_22120001 RAL-287 334 chr3L 22169453 22169486 chr3L 22169546 22169579 7 93 1.5 0.5 1.0 3.5 126 chr3L 22169453 intron olf413 + chr3L 22169516 intron olf413 + chr3L 22169579 intron olf413 + chr3L_7_22165001 chr3L_22165001 RAL-287 335 chr3L 22447205 22447222 chr3L 22447296 22447312 5 89 1.5 2.5 2.0 1.7 107 chr3L 22447205 intergenic not near genes chr3L 22447258 intergenic not near genes chr3L 22447312 intergenic not near genes chr3L_5_22445001 chr3L_22445001 RAL-287 336 chr3L 22570435 22570453 chr3L 22570570 22570595 4 139 2.0 1.5 1.8 1.4 160 chr3L 22570435 intergenic not near genes chr3L 22570515 intergenic not near genes chr3L 22570595 intergenic not near genes chr3L_4_22570001 chr3L_22570001 RAL-287 337 chr3L 22572100 22572124 chr3L 22572169 22572205 6 73 2.5 2.0 2.2 1.9 105 chr3L 22572100 intergenic not near genes chr3L 22572152 intergenic not near genes chr3L 22572205 intergenic not near genes chr3L_6_22570001 chr3L_22570001 RAL-287 338 chr3L 22617192 22617216 chr3L 22624643 22624668 blood 5 7451 1.0 0.5 0.8 2.8 7476 chr3L 22617192 intron CG14459 - chr3L 22620930 intron CG14459 - chr3L 22624668 intron CG14459 - chr3L_5_22620001 chr3L_22620001 RAL-287 339 chr3L 22665012 22665035 chr3L 22665099 22665122 7 85 2.5 1.5 2.0 2.3 110 chr3L 22665012 intergenic CR43270 - chr3L 22665067 intergenic CR43270 - chr3L 22665122 intergenic CR43270 - chr3L_7_22665001 chr3L_22665001 RAL-287 340 chr3L 22909023 22909054 chr3L 22909114 22909132 7 89 3.0 1.5 2.2 2.2 109 chr3L 22909023 intergenic CR45661 + chr3L 22909078 intergenic CR45661 + chr3L 22909132 intergenic CR45661 + chr3L_7_22905001 chr3L_22905001 RAL-287 341 chr3L 24021278 24021300 chr3L 24022435 24022444 1360 4 1154 0.5 0.5 0.5 2.7 1166 chr3L 24021278 intergenic not near genes chr3L 24021861 intergenic not near genes chr3L 24022444 intergenic not near genes chr3L_4_24020001 chr3L_24020001 RAL-287 342 chr3L 25995917 25995951 chr3L 25995998 25996031 6 80 0.5 1.5 1.0 3.0 114 chr3L 25995917 intron CG40178 - chr3L 25995974 intron CG40178 - chr3L 25996031 intron CG40178 - chr3L_6_25995001 chr3L_25995001 RAL-287 343 chr3L 26694930 26694957 chr3L 26695010 26695032 5 76 2.5 2.0 2.2 1.6 102 chr3L 26694930 intergenic not near genes chr3L 26694981 intergenic not near genes chr3L 26695032 intergenic not near genes chr3L_5_26690001 chr3L_26690001 RAL-287 344 chr3L 27727637 27727671 chr3L 27728744 27728760 G-element 4 1102 1.0 2.0 1.5 1.6 1123 chr3L 27727637 intergenic not near genes chr3L 27728198 intergenic not near genes chr3L 27728760 intergenic not near genes chr3L_4_27725001 chr3L_27725001 RAL-287 345 chr3R 2534140 2534164 chr3R 2541702 2541717 6 7558 12.0 8.5 10.2 0.5 7577 chr3R 2534140 intergenic not near genes chr3R 2537928 intergenic not near genes chr3R 2541717 intergenic not near genes chr3R_6_2535001 chr3R_2535001 RAL-287 346 chr3R 4408413 4408445 chr3R 4412717 4412726 Juan 7 4300 1.0 1.0 1.0 3.5 4313 chr3R 4408413 intron CG32944 - chr3R 4410570 intron CG32944 - chr3R 4412726 intron CG32944 - chr3R_7_4410001 chr3R_4410001 RAL-287 347 chr3R 4568590 4568722 chr3R 4568670 4568809 6 84 0.5 1.5 1.0 3.0 219 chr3R 4568590 intergenic not near genes chr3R 4568700 intergenic not near genes chr3R 4568809 intergenic not near genes chr3R_6_4565001 chr3R_4565001 RAL-287 348 chr3R 4609546 4609576 chr3R 4610710 4610730 1360 6 1159 3.5 2.5 3.0 1.5 1184 chr3R 4609546 intergenic not near genes chr3R 4610138 intergenic not near genes chr3R 4610730 intergenic not near genes chr3R_6_4610001 chr3R_4610001 RAL-287 349 chr3R 4753261 4753277 chr3R 4757559 4757559 F-element 4 4294 4.5 4.0 4.2 0.8 4298 chr3R 4753261 intron,intron atms +,CG44098 - chr3R 4755410 intron,intron atms +,CG44098 - chr3R 4757559 intron,exon atms +,CG44098 - chr3R_4_4755001 chr3R_4755001 RAL-287 350 chr3R 4759741 4759744 chr3R 4761209 4761241 hopper2 4 1480 4.5 2.5 3.5 0.9 1500 chr3R 4759741 intron,intron atms +,CG44098 - chr3R 4760491 intron,intron atms +,CG44098 - chr3R 4761241 intron,intron atms +,CG44098 - chr3R_4_4760001 chr3R_4760001 RAL-287 351 chr3R 4861566 4861591 chr3R 4861646 4861662 4 75 4.0 2.0 3.0 1.0 96 chr3R 4861566 intron opa + chr3R 4861614 intron opa + chr3R 4861662 intron opa + chr3R_4_4860001 chr3R_4860001 RAL-287 352 chr3R 4887481 4887511 chr3R 4894858 4894878 rover 5 7370 2.5 2.0 2.2 1.6 7397 chr3R 4887481 intergenic not near genes chr3R 4891180 intergenic not near genes chr3R 4894878 intergenic not near genes chr3R_5_4890001 chr3R_4890001 RAL-287 353 chr3R 4981731 4981750 chr3R 4981808 4981822 6 74 1.5 1.5 1.5 2.4 91 chr3R 4981731 intergenic CG14662 - chr3R 4981776 intergenic CG14662 -,CR43478 + chr3R 4981822 intergenic CG14662 -,CR43478 + chr3R_6_4980001 chr3R_4980001 RAL-287 354 chr3R 5001506 5001526 chr3R 5001971 5001994 8 464 1.0 2.0 1.5 3.2 488 chr3R 5001506 intron CG2022 - chr3R 5001750 intron CG2022 - chr3R 5001994 intron CG2022 - chr3R_8_5000001 chr3R_5000001 RAL-287 355 chr3R 5060706 5060729 chr3R 5060796 5060819 4 89 2.5 1.5 2.0 1.3 113 chr3R 5060706 intergenic not near genes chr3R 5060762 intergenic not near genes chr3R 5060819 intergenic not near genes chr3R_4_5060001 chr3R_5060001 RAL-287 356 chr3R 5067986 5068010 chr3R 5073501 5073527 mdg3 4 5516 2.0 0.0 1.0 2.0 5541 chr3R 5067986 intergenic not near genes chr3R 5070756 intergenic not near genes chr3R 5073527 intergenic not near genes chr3R_4_5070001 chr3R_5070001 RAL-287 357 chr3R 5278087 5278113 chr3R 5278168 5278194 6 80 3.0 1.0 2.0 2.0 107 chr3R 5278087 intron mtd - chr3R 5278140 intron mtd - chr3R 5278194 intron mtd - chr3R_6_5275001 chr3R_5275001 RAL-287 358 chr3R 5338403 5338425 chr3R 5343579 5343602 Rt1c 5 5176 1.5 2.5 2.0 1.7 5199 chr3R 5338403 intron mtd - chr3R 5341002 intron mtd - chr3R 5343602 intron mtd - chr3R_5_5340001 chr3R_5340001 RAL-287 359 chr3R 5399842 5399866 chr3R 5399922 5399947 7 79 3.5 2.0 2.8 1.8 105 chr3R 5399842 intergenic CG1172 + chr3R 5399894 intergenic CG1172 + chr3R 5399947 intergenic CG1172 + chr3R_7_5395001 chr3R_5395001 RAL-287 360 chr3R 5573160 5573183 chr3R 5573235 5573251 7 74 0.5 2.0 1.2 3.2 91 chr3R 5573160 intron CRMP + chr3R 5573206 intron CRMP + chr3R 5573251 intron CRMP + chr3R_7_5570001 chr3R_5570001 RAL-287 361 chr3R 5809112 5809145 chr3R 5809353 5809366 pogo 4 236 1.5 2.0 1.8 1.4 254 chr3R 5809112 3` UTR CG11000 + chr3R 5809239 3` UTR CG11000 + chr3R 5809366 3` UTR CG11000 + chr3R_4_5805001 chr3R_5805001 RAL-287 362 chr3R 5822381 5822411 chr3R 5823546 5823560 1360 7 1163 1.0 1.0 1.0 3.5 1179 chr3R 5822381 3` UTR CG2023 - chr3R 5822970 3` UTR CG2023 - chr3R 5823560 3` UTR CG2023 - chr3R_7_5820001 chr3R_5820001 RAL-287 363 chr3R 5846896 5846906 chr3R 5846972 5846982 4 76 0.5 0.0 0.2 3.3 86 chr3R 5846896 intergenic CG14676 +,CG1213 + chr3R 5846939 intergenic CG14676 +,CG1213 + chr3R 5846982 intergenic CG14676 +,CG1213 + chr3R_4_5845001 chr3R_5845001 RAL-287 364 chr3R 5927582 5927591 chr3R 5927822 5927831 pogo 4 240 0.0 2.0 1.0 2.0 249 chr3R 5927582 intron CG34113 - chr3R 5927706 intron CG34113 - chr3R 5927831 intron CG34113 - chr3R_4_5925001 chr3R_5925001 RAL-287 365 chr3R 6206294 6206317 chr3R 6206508 6206519 BS 5 213 3.5 3.5 3.5 1.1 225 chr3R 6206294 exon Osi24 + chr3R 6206406 intron Osi24 + chr3R 6206519 intron Osi24 + chr3R_5_6205001 chr3R_6205001 RAL-287 366 chr3R 6598305 6598332 chr3R 6598495 6598522 4 190 1.0 1.5 1.2 1.8 217 chr3R 6598305 intergenic CG1138 - chr3R 6598414 intergenic CG1138 - chr3R 6598522 intergenic CG1138 - chr3R_4_6595001 chr3R_6595001 RAL-287 367 chr3R 6610046 6610060 chr3R 6610196 6610211 5 151 3.0 1.0 2.0 1.7 165 chr3R 6610046 intergenic not near genes chr3R 6610128 intergenic not near genes chr3R 6610211 intergenic not near genes chr3R_5_6610001 chr3R_6610001 RAL-287 368 chr3R 6655823 6655851 chr3R 6656142 6656170 5 318 0.5 1.0 0.8 2.8 347 chr3R 6655823 3` UTR Taf1 + chr3R 6655996 3` UTR Taf1 + chr3R 6656170 intergenic CG1307 -,Taf1 + chr3R_5_6655001 chr3R_6655001 RAL-287 369 chr3R 6794238 6794269 chr3R 6794636 6794669 5 399 3.0 0.5 1.8 1.8 431 chr3R 6794238 intron Dfd + chr3R 6794454 intron Dfd + chr3R 6794669 intron Dfd + chr3R_5_6790001 chr3R_6790001 RAL-287 370 chr3R 6891241 6891264 chr3R 6891315 6891340 6 75 1.5 0.0 0.8 3.3 99 chr3R 6891241 intergenic not near genes chr3R 6891290 intergenic not near genes chr3R 6891340 intergenic not near genes chr3R_6_6890001 chr3R_6890001 RAL-287 371 chr3R 7396057 7396088 chr3R 7396151 7396183 5 95 1.5 0.0 0.8 2.8 126 chr3R 7396057 intergenic not near genes chr3R 7396120 intergenic not near genes chr3R 7396183 intergenic not near genes chr3R_5_7395001 chr3R_7395001 RAL-287 372 chr3R 7589803 7589818 chr3R 7589924 7589939 4 121 1.5 3.0 2.2 1.2 136 chr3R 7589803 intron CG34127 - chr3R 7589871 intron CG34127 - chr3R 7589939 intron CG34127 - chr3R_4_7585001 chr3R_7585001 RAL-287 373 chr3R 7655006 7655037 chr3R 7655086 7655103 4 77 1.5 3.5 2.5 1.1 97 chr3R 7655006 intergenic not near genes chr3R 7655054 intergenic not near genes chr3R 7655103 intergenic not near genes chr3R_4_7655001 chr3R_7655001 RAL-287 374 chr3R 7680857 7680869 chr3R 7681488 7681495 4 629 2.5 2.5 2.5 1.1 638 chr3R 7680857 intron Nlg1 + chr3R 7681176 intron Nlg1 + chr3R 7681495 intron Nlg1 + chr3R_4_7680001 chr3R_7680001 RAL-287 375 chr3R 7857649 7857670 chr3R 7857731 7857753 4 83 0.5 0.0 0.2 3.3 104 chr3R 7857649 3` UTR CG17816 - chr3R 7857701 3` UTR CG17816 - chr3R 7857753 3` UTR CG17816 - chr3R_4_7855001 chr3R_7855001 RAL-287 376 chr3R 8080249 8080269 chr3R 8080345 8080365 4 95 1.5 1.5 1.5 1.6 116 chr3R 8080249 intron mAChR-B + chr3R 8080307 intron mAChR-B + chr3R 8080365 intron mAChR-B + chr3R_4_8080001 chr3R_8080001 RAL-287 377 chr3R 8081149 8081176 chr3R 8081227 8081240 5 73 1.0 2.5 1.8 1.8 91 chr3R 8081149 intron mAChR-B + chr3R 8081194 intron mAChR-B + chr3R 8081240 intron mAChR-B + chr3R_5_8080001 chr3R_8080001 RAL-287 378 chr3R 8094410 8094430 chr3R 8099714 8099735 Transpac 4 5304 2.5 0.5 1.5 1.6 5325 chr3R 8094410 intron CG7900 + chr3R 8097072 intron CG7900 + chr3R 8099735 intron CG7900 + chr3R_4_8095001 chr3R_8095001 RAL-287 379 chr3R 8339246 8339247 chr3R 21907534 21907536 4 13568289 8.0 13.0 10.5 0.3 13568290 chr3R 8339246 intergenic not near genes chr3R 15123391 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_4_15120001 chr3R_15120001 RAL-287 380 chr3R 8576166 8576188 chr3R 8576337 8576359 6 170 1.5 1.0 1.2 2.7 193 chr3R 8576166 intergenic not near genes chr3R 8576262 intergenic not near genes chr3R 8576359 intergenic not near genes chr3R_6_8575001 chr3R_8575001 RAL-287 381 chr3R 8613613 8613635 chr3R 8613720 8613742 6 106 4.0 1.5 2.8 1.6 129 chr3R 8613613 intron 5-HT2B + chr3R 8613678 intron 5-HT2B + chr3R 8613742 intron 5-HT2B + chr3R_6_8610001 chr3R_8610001 RAL-287 382 chr3R 8707361 8707380 chr3R 8709802 8709821 jockey 4 2441 1.5 3.0 2.2 1.2 2460 chr3R 8707361 intergenic not near genes chr3R 8708591 intergenic not near genes chr3R 8709821 intergenic not near genes chr3R_4_8705001 chr3R_8705001 RAL-287 383 chr3R 9605087 9605121 chr3R 9605199 9605232 7 112 2.0 1.0 1.5 2.8 145 chr3R 9605087 intron CG8312 + chr3R 9605160 intron CG8312 + chr3R 9605232 intron CG8312 + chr3R_7_9605001 chr3R_9605001 RAL-287 384 chr3R 9859996 9860004 chr3R 9860110 9860118 4 114 2.0 2.5 2.2 1.2 122 chr3R 9859996 intron Teh1 - chr3R 9860057 intron Teh1 - chr3R 9860118 intron Teh1 - chr3R_4_9860001 chr3R_9860001 RAL-287 385 chr3R 9926501 9926525 chr3R 9926588 9926612 5 79 1.0 3.0 2.0 1.7 111 chr3R 9926501 intron Glut4EF + chr3R 9926556 intron Glut4EF + chr3R 9926612 intron Glut4EF + chr3R_5_9925001 chr3R_9925001 RAL-287 386 chr3R 10561800 10561829 chr3R 10561889 10561919 5 89 1.0 3.0 2.0 1.7 119 chr3R 10561800 intron hth - chr3R 10561860 intron hth - chr3R 10561919 exon hth - chr3R_5_10560001 chr3R_10560001 RAL-287 387 chr3R 10904923 10904936 chr3R 10905127 10905140 5 203 0.0 3.0 1.5 2.0 217 chr3R 10904923 intergenic not near genes chr3R 10905032 intergenic not near genes chr3R 10905140 intergenic not near genes chr3R_5_10905001 chr3R_10905001 RAL-287 388 chr3R 10979658 10979677 chr3R 10979740 10979758 4 82 2.0 2.0 2.0 1.3 100 chr3R 10979658 intron CG34114 + chr3R 10979708 intron CG34114 + chr3R 10979758 intron CG34114 + chr3R_4_10975001 chr3R_10975001 RAL-287 389 chr3R 11694724 11694751 chr3R 11694816 11694844 4 93 1.5 0.5 1.0 2.0 120 chr3R 11694724 intergenic Fer3 - chr3R 11694784 intergenic Fer3 - chr3R 11694844 intergenic not near genes chr3R_4_11690001 chr3R_11690001 RAL-287 390 chr3R 11841060 11841099 chr3R 11846251 11846275 BS 4 5180 2.5 2.5 2.5 1.1 5215 chr3R 11841060 intron CG6959 - chr3R 11843668 intron CG6959 - chr3R 11846275 intron CG6959 - chr3R_4_11840001 chr3R_11840001 RAL-287 391 chr3R 12214346 12214372 chr3R 12214435 12214446 5 85 3.5 2.5 3.0 1.2 100 chr3R 12214346 3` UTR CG4848 - chr3R 12214396 3` UTR CG4848 - chr3R 12214446 3` UTR CG4848 - chr3R_5_12210001 chr3R_12210001 RAL-287 392 chr3R 12568495 12568523 chr3R 12568575 12568577 4 74 0.5 0.5 0.5 2.7 82 chr3R 12568495 intron Octbeta2R - chr3R 12568536 intron Octbeta2R - chr3R 12568577 intron Octbeta2R - chr3R_4_12565001 chr3R_12565001 RAL-287 393 chr3R 12733856 12733866 chr3R 12733936 12733943 4 79 2.5 2.5 2.5 1.1 87 chr3R 12733856 intergenic not near genes chr3R 12733900 intergenic not near genes chr3R 12733943 intergenic not near genes chr3R_4_12730001 chr3R_12730001 RAL-287 394 chr3R 12763136 12763152 chr3R 12763213 12763229 4 77 0.0 0.5 0.2 3.3 93 chr3R 12763136 intron beat-Vc - chr3R 12763182 intron beat-Vc - chr3R 12763229 intron beat-Vc - chr3R_4_12760001 chr3R_12760001 RAL-287 395 chr3R 12893480 12893493 chr3R 12893542 12893569 4 72 1.0 0.5 0.8 2.2 89 chr3R 12893480 intergenic d-cup + chr3R 12893524 intergenic d-cup + chr3R 12893569 intergenic d-cup + chr3R_4_12890001 chr3R_12890001 RAL-287 396 chr3R 13104419 13104420 chr3R 21907534 21907534 5 8803115 14.0 13.0 13.5 0.3 8803115 chr3R 13104419 intron timeout + chr3R 17505976 intergenic Dscam3 - chr3R 21907534 intergenic CG6678 + chr3R_5_17505001 chr3R_17505001 RAL-287 397 chr3R 13195955 13195978 chr3R 13196050 13196056 9 93 1.5 2.5 2.0 3.0 101 chr3R 13195955 intergenic not near genes chr3R 13196006 intergenic not near genes chr3R 13196056 intergenic not near genes chr3R_9_13195001 chr3R_13195001 RAL-287 398 chr3R 13380721 13380741 chr3R 13380807 13380829 4 86 2.0 2.5 2.2 1.2 108 chr3R 13380721 exon CG8870 + chr3R 13380775 exon CG8870 + chr3R 13380829 intron CG8870 + chr3R_4_13380001 chr3R_13380001 RAL-287 399 chr3R 13606706 13606736 chr3R 13606853 13606883 4 146 1.0 0.0 0.5 2.7 177 chr3R 13606706 intergenic CG9759 - chr3R 13606794 intergenic CG9759 - chr3R 13606883 intergenic CG9759 - chr3R_4_13605001 chr3R_13605001 RAL-287 400 chr3R 13693026 13693028 chr3R 21907534 21907536 10 8214507 7.0 13.0 10.0 0.9 8214510 chr3R 13693026 3` UTR flfl + chr3R 17800281 exon CG17803 - chr3R 21907536 intergenic CG6678 + chr3R_10_17800001 chr3R_17800001 RAL-287 401 chr3R 13863683 13863715 chr3R 13863770 13863789 4 82 2.5 2.5 2.5 1.1 106 chr3R 13863683 intergenic not near genes chr3R 13863736 intergenic not near genes chr3R 13863789 intergenic not near genes chr3R_4_13860001 chr3R_13860001 RAL-287 402 chr3R 14384632 14384639 chr3R 14384715 14384729 4 88 0.5 0.0 0.2 3.3 97 chr3R 14384632 intergenic not near genes chr3R 14384680 intergenic not near genes chr3R 14384729 intergenic not near genes chr3R_4_14380001 chr3R_14380001 RAL-287 403 chr3R 14898475 14898500 chr3R 14898595 14898620 4 120 1.5 1.0 1.2 1.8 145 chr3R 14898475 intergenic Nup93-2 -,CG3817 + chr3R 14898548 intergenic Nup93-2 -,CG3817 + chr3R 14898620 intergenic CG3817 +,Nup93-2 - chr3R_4_14895001 chr3R_14895001 RAL-287 404 chr3R 15452282 15452302 chr3R 15452357 15452379 6 76 2.5 3.5 3.0 1.5 97 chr3R 15452282 intron AdamTS-A - chr3R 15452330 intron AdamTS-A - chr3R 15452379 intron AdamTS-A - chr3R_6_15450001 chr3R_15450001 RAL-287 405 chr3R 15517598 15517622 chr3R 15517681 15517704 4 77 2.0 2.5 2.2 1.2 106 chr3R 15517598 intergenic not near genes chr3R 15517651 intergenic not near genes chr3R 15517704 intergenic not near genes chr3R_4_15515001 chr3R_15515001 RAL-287 406 chr3R 15594654 15594670 chr3R 15594737 15594753 5 83 0.0 2.5 1.2 2.3 99 chr3R 15594654 intergenic not near genes chr3R 15594704 intergenic not near genes chr3R 15594753 intergenic not near genes chr3R_5_15590001 chr3R_15590001 RAL-287 407 chr3R 15601165 15601177 chr3R 15608687 15608689 412 4 7517 3.5 2.0 2.8 1.1 7524 chr3R 15601165 intergenic not near genes chr3R 15604927 intergenic not near genes chr3R 15608689 intergenic not near genes chr3R_4_15600001 chr3R_15600001 RAL-287 408 chr3R 15811503 15811535 chr3R 15811740 15811767 6 232 0.5 1.5 1.0 3.0 264 chr3R 15811503 intron alpha-Man-IIb + chr3R 15811635 intron alpha-Man-IIb + chr3R 15811767 intron,3` UTR alpha-Man-IIb +,CR45211 - chr3R_6_15810001 chr3R_15810001 RAL-287 409 chr3R 15892651 15892683 chr3R 15892732 15892747 5 77 0.5 1.0 0.8 2.8 96 chr3R 15892651 intron CG14877 - chr3R 15892699 intron CG14877 - chr3R 15892747 intron CG14877 - chr3R_5_15890001 chr3R_15890001 RAL-287 410 chr3R 16073438 16073463 chr3R 16073541 16073566 5 103 2.0 0.0 1.0 2.5 128 chr3R 16073438 intron Mhcl - chr3R 16073502 intron Mhcl - chr3R 16073566 intron Mhcl - chr3R_5_16070001 chr3R_16070001 RAL-287 411 chr3R 16179078 16179097 chr3R 16179200 16179207 5 112 1.5 0.5 1.0 2.5 129 chr3R 16179078 intron CG8925 + chr3R 16179142 intron CG8925 + chr3R 16179207 intron CG8925 + chr3R_5_16175001 chr3R_16175001 RAL-287 412 chr3R 16411477 16411511 chr3R 16411554 16411589 7 78 0.5 2.0 1.2 3.2 112 chr3R 16411477 intergenic not near genes chr3R 16411533 intergenic not near genes chr3R 16411589 intergenic not near genes chr3R_7_16410001 chr3R_16410001 RAL-287 413 chr3R 16708925 16708948 chr3R 16709008 16709011 4 78 2.5 2.0 2.2 1.2 86 chr3R 16708925 intron Ubx - chr3R 16708968 intron Ubx - chr3R 16709011 intron Ubx - chr3R_4_16705001 chr3R_16705001 RAL-287 414 chr3R 16756317 16756339 chr3R 16762508 16762526 diver 6 6188 2.0 0.5 1.2 2.7 6209 chr3R 16756317 intron bxd - chr3R 16759422 intron bxd - chr3R 16762526 intron bxd - chr3R_6_16755001 chr3R_16755001 RAL-287 415 chr3R 17348731 17348755 chr3R 17348816 17348844 11 86 2.5 0.0 1.2 5.0 113 chr3R 17348731 intron beat-IIa - chr3R 17348788 intron beat-IIa - chr3R 17348844 intron beat-IIa - chr3R_11_17345001 chr3R_17345001 RAL-287 416 chr3R 18268992 18269018 chr3R 18269127 18269152 4 134 1.5 2.0 1.8 1.4 160 chr3R 18268992 intron CG18599 + chr3R 18269072 intron CG18599 + chr3R 18269152 intron CG18599 + chr3R_4_18265001 chr3R_18265001 RAL-287 417 chr3R 18501599 18501614 chr3R 18501680 18501695 4 80 3.0 2.0 2.5 1.1 96 chr3R 18501599 intron fru - chr3R 18501647 intron fru - chr3R 18501695 intron fru - chr3R_4_18500001 chr3R_18500001 RAL-287 418 chr3R 18766778 18766803 chr3R 18766856 18766879 9 78 1.5 1.0 1.2 4.1 101 chr3R 18766778 intron CG7720 - chr3R 18766828 intron CG7720 - chr3R 18766879 intron CG7720 - chr3R_9_18765001 chr3R_18765001 RAL-287 419 chr3R 19140263 19140296 chr3R 19140710 19140744 6 440 2.0 1.5 1.8 2.1 481 chr3R 19140263 3` UTR Ppcs - chr3R 19140504 3` UTR Ppcs - chr3R 19140744 3` UTR Ppcs - chr3R_6_19140001 chr3R_19140001 RAL-287 420 chr3R 19490444 19490466 chr3R 19490533 19490555 5 89 2.5 1.0 1.8 1.8 111 chr3R 19490444 intron,intron Dys +,CG15025 - chr3R 19490500 intron,intron Dys +,CG15025 - chr3R 19490555 intron,intron Dys +,CG15025 - chr3R_5_19490001 chr3R_19490001 RAL-287 421 chr3R 19859967 19859997 chr3R 19860048 19860078 4 81 1.5 2.0 1.8 1.4 111 chr3R 19859967 intron Ire1 - chr3R 19860022 intron Ire1 - chr3R 19860078 intron Ire1 - chr3R_4_19860001 chr3R_19860001 RAL-287 422 chr3R 19953949 19953972 chr3R 19954025 19954042 4 72 4.0 2.0 3.0 1.0 93 chr3R 19953949 intron Hs6st - chr3R 19953996 intron Hs6st - chr3R 19954042 intron Hs6st - chr3R_4_19950001 chr3R_19950001 RAL-287 423 chr3R 20060642 20060652 chr3R 20060714 20060733 5 75 3.5 2.0 2.8 1.3 91 chr3R 20060642 intergenic not near genes chr3R 20060688 intergenic not near genes chr3R 20060733 intergenic not near genes chr3R_5_20060001 chr3R_20060001 RAL-287 424 chr3R 20118022 20118211 chr3R 20118108 20118295 10 82 1.5 4.5 3.0 2.5 273 chr3R 20118022 intergenic not near genes chr3R 20118158 intergenic not near genes chr3R 20118295 intergenic not near genes chr3R_10_20115001 chr3R_20115001 RAL-287 425 chr3R 20156706 20156715 chr3R 20165865 20165869 roo 4 9160 2.0 3.5 2.8 1.1 9163 chr3R 20156706 intergenic not near genes chr3R 20161288 intergenic not near genes chr3R 20165869 intergenic not near genes chr3R_4_20160001 chr3R_20160001 RAL-287 426 chr3R 20167800 20167823 chr3R 20167869 20167901 5 73 0.5 1.0 0.8 2.8 101 chr3R 20167800 intergenic not near genes chr3R 20167850 intergenic not near genes chr3R 20167901 intergenic not near genes chr3R_5_20165001 chr3R_20165001 RAL-287 427 chr3R 20205566 20205595 chr3R 20205686 20205717 4 116 2.0 0.5 1.2 1.8 151 chr3R 20205566 intron Nlg4 + chr3R 20205642 intron Nlg4 + chr3R 20205717 intron Nlg4 + chr3R_4_20205001 chr3R_20205001 RAL-287 428 chr3R 20209800 20209828 chr3R 20209886 20209914 5 85 0.5 0.5 0.5 3.3 114 chr3R 20209800 intron Nlg4 + chr3R 20209857 intron Nlg4 + chr3R 20209914 intron Nlg4 + chr3R_5_20205001 chr3R_20205001 RAL-287 429 chr3R 20266521 20266545 chr3R 20272987 20273015 Burdock 7 6466 1.0 0.0 0.5 4.7 6494 chr3R 20266521 intron cic + chr3R 20269768 intron cic + chr3R 20273015 intron cic + chr3R_7_20265001 chr3R_20265001 RAL-287 430 chr3R 20870257 20870283 chr3R 20870342 20870368 4 84 2.5 3.5 3.0 1.0 111 chr3R 20870257 intergenic not near genes chr3R 20870312 intergenic not near genes chr3R 20870368 intergenic not near genes chr3R_4_20870001 chr3R_20870001 RAL-287 431 chr3R 21154551 21154583 chr3R 21154756 21154798 4 212 2.0 0.0 1.0 2.0 247 chr3R 21154551 intron SNF4Agamma + chr3R 21154674 intron SNF4Agamma + chr3R 21154798 intron SNF4Agamma + chr3R_4_21150001 chr3R_21150001 RAL-287 432 chr3R 21907534 21907534 chr3R 28831801 28831802 5 6924267 15.5 13.0 14.2 0.3 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_5_25365001 chr3R_25365001 RAL-287 433 chr3R 21907535 21907535 chr3R 28831801 28831804 15 6924267 15.5 13.0 14.2 1.0 6924269 chr3R 21907535 intergenic CG6678 + chr3R 25369670 intron Fur1 - chr3R 28831804 intron WASp - chr3R_15_25365001 chr3R_25365001 RAL-287 434 chr3R 21907536 21907536 chr3R 28831801 28831802 11 6924266 15.5 13.0 14.2 0.7 6924266 chr3R 21907536 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831802 intron WASp - chr3R_11_25365001 chr3R_25365001 RAL-287 435 chr3R 22335842 22335854 chr3R 22335928 22335940 4 86 0.5 5.5 3.0 1.0 98 chr3R 22335842 intron CG5388 - chr3R 22335891 intron CG5388 - chr3R 22335940 intron CG5388 - chr3R_4_22335001 chr3R_22335001 RAL-287 436 chr3R 22450548 22450578 chr3R 22453188 22453197 NOF 5 2632 0.5 2.0 1.2 2.3 2649 chr3R 22450548 intron CG34376 + chr3R 22451872 intron CG34376 + chr3R 22453197 intron CG34376 + chr3R_5_22450001 chr3R_22450001 RAL-287 437 chr3R 22797766 22797927 chr3R 22797852 22798023 10 90 0.0 0.0 0.0 10.0 257 chr3R 22797766 intergenic not near genes chr3R 22797894 intergenic not near genes chr3R 22798023 intergenic not near genes chr3R_10_22795001 chr3R_22795001 RAL-287 438 chr3R 23291255 23291283 chr3R 23291341 23291369 4 84 2.0 3.0 2.5 1.1 114 chr3R 23291255 3` UTR pnt - chr3R 23291312 3` UTR pnt - chr3R 23291369 exon pnt - chr3R_4_23290001 chr3R_23290001 RAL-287 439 chr3R 23572768 23572779 chr3R 23572882 23572899 5 116 1.0 1.0 1.0 2.5 131 chr3R 23572768 intron beat-IV + chr3R 23572834 intron beat-IV + chr3R 23572899 intron beat-IV + chr3R_5_23570001 chr3R_23570001 RAL-287 440 chr3R 23626323 23626351 chr3R 23626421 23626450 7 96 1.5 2.5 2.0 2.3 127 chr3R 23626323 intron CG31145 - chr3R 23626386 intron CG31145 - chr3R 23626450 intron CG31145 - chr3R_7_23625001 chr3R_23625001 RAL-287 441 chr3R 23629445 23629475 chr3R 23629521 23629551 9 75 4.5 3.5 4.0 1.8 106 chr3R 23629445 intron CG31145 - chr3R 23629498 intron CG31145 - chr3R 23629551 intron CG31145 - chr3R_9_23625001 chr3R_23625001 RAL-287 442 chr3R 23944921 23944936 chr3R 23945006 23945021 4 84 1.5 3.5 2.5 1.1 100 chr3R 23944921 intron CG12268 - chr3R 23944971 intron CG12268 - chr3R 23945021 exon CG12268 - chr3R_4_23940001 chr3R_23940001 RAL-287 443 chr3R 24076920 24076949 chr3R 24078384 24078416 hobo 6 1460 0.0 2.5 1.2 2.7 1496 chr3R 24076920 intron 4EHP - chr3R 24077668 intron 4EHP - chr3R 24078416 intron 4EHP - chr3R_6_24075001 chr3R_24075001 RAL-287 444 chr3R 24199763 24199772 chr3R 24199817 24199842 4 64 1.0 1.5 1.2 1.8 79 chr3R 24199763 intron twin - chr3R 24199802 intron twin - chr3R 24199842 intron twin - chr3R_4_24195001 chr3R_24195001 RAL-287 445 chr3R 24426286 24426316 chr3R 24426540 24426573 8 252 3.0 1.0 2.0 2.7 287 chr3R 24426286 intron nAChRalpha1 - chr3R 24426430 intron nAChRalpha1 - chr3R 24426573 intron nAChRalpha1 - chr3R_8_24425001 chr3R_24425001 RAL-287 446 chr3R 24974914 24974928 chr3R 24974993 24975007 6 79 1.5 4.5 3.0 1.5 93 chr3R 24974914 intergenic not near genes chr3R 24974960 intergenic not near genes chr3R 24975007 intergenic not near genes chr3R_6_24970001 chr3R_24970001 RAL-287 447 chr3R 25236198 25236208 chr3R 25236337 25236347 5 139 3.0 3.5 3.2 1.2 149 chr3R 25236198 intergenic not near genes chr3R 25236272 intergenic not near genes chr3R 25236347 intergenic not near genes chr3R_5_25235001 chr3R_25235001 RAL-287 448 chr3R 25239233 25239253 chr3R 25239344 25239347 4 106 2.5 5.0 3.8 0.8 114 chr3R 25239233 intergenic CG11852 + chr3R 25239290 intergenic CG11852 + chr3R 25239347 intergenic CG11852 + chr3R_4_25235001 chr3R_25235001 RAL-287 449 chr3R 25555548 25555559 chr3R 25555627 25555638 4 78 2.0 2.5 2.2 1.2 90 chr3R 25555548 intron msi + chr3R 25555593 intron msi + chr3R 25555638 intron msi + chr3R_4_25555001 chr3R_25555001 RAL-287 450 chr3R 25669069 25669098 chr3R 25669163 25669191 6 91 0.5 3.0 1.8 2.1 122 chr3R 25669069 intron Lgr3 + chr3R 25669130 intron Lgr3 + chr3R 25669191 intron Lgr3 + chr3R_6_25665001 chr3R_25665001 RAL-287 451 chr3R 25828303 25828327 chr3R 25828548 25828573 10 248 9.5 17.5 13.5 0.7 270 chr3R 25828303 intergenic not near genes chr3R 25828438 intergenic not near genes chr3R 25828573 intergenic not near genes chr3R_10_25825001 chr3R_25825001 RAL-287 452 chr3R 25832704 25832722 chr3R 25841878 25841900 roo 8 9180 3.5 4.5 4.0 1.6 9196 chr3R 25832704 exon alpha4GT2 + chr3R 25837302 intron alpha4GT2 + chr3R 25841900 exon alpha4GT2 + chr3R_8_25835001 chr3R_25835001 RAL-287 453 chr3R 26558352 26558359 chr3R 26565641 26565671 Stalker4 4 7301 2.0 2.0 2.0 1.3 7319 chr3R 26558352 intron scrib + chr3R 26562012 intron scrib + chr3R 26565671 intron scrib + chr3R_4_26560001 chr3R_26560001 RAL-287 454 chr3R 26600931 26600969 chr3R 26601016 26601054 10 78 3.0 4.5 3.8 2.1 123 chr3R 26600931 intron scrib + chr3R 26600992 intron scrib + chr3R 26601054 intron scrib + chr3R_10_26600001 chr3R_26600001 RAL-287 455 chr3R 26642749 26642756 chr3R 26643143 26643150 jockey 4 394 3.5 1.0 2.2 1.2 401 chr3R 26642749 intergenic not near genes chr3R 26642950 intergenic not near genes chr3R 26643150 intergenic not near genes chr3R_4_26640001 chr3R_26640001 RAL-287 456 chr3R 26770242 26770262 chr3R 26770317 26770339 4 76 3.5 1.5 2.5 1.1 97 chr3R 26770242 intergenic CR45563 + chr3R 26770290 intergenic CR45563 + chr3R 26770339 intergenic not near genes chr3R_4_26770001 chr3R_26770001 RAL-287 457 chr3R 26885687 26885720 chr3R 26885787 26885819 7 100 3.0 0.5 1.8 2.5 132 chr3R 26885687 intron T48 + chr3R 26885753 intron T48 + chr3R 26885819 intron T48 + chr3R_7_26885001 chr3R_26885001 RAL-287 458 chr3R 26907367 26907401 chr3R 26907461 26907495 4 88 1.0 1.0 1.0 2.0 128 chr3R 26907367 intron T48 + chr3R 26907431 intron T48 + chr3R 26907495 intron T48 + chr3R_4_26905001 chr3R_26905001 RAL-287 459 chr3R 27041829 27041835 chr3R 27041914 27041921 4 88 4.0 2.5 3.2 1.0 92 chr3R 27041829 intron RYa-R + chr3R 27041875 intron RYa-R + chr3R 27041921 intron RYa-R + chr3R_4_27040001 chr3R_27040001 RAL-287 460 chr3R 27043686 27043706 chr3R 27043780 27043799 4 94 4.5 2.0 3.2 1.0 113 chr3R 27043686 intron RYa-R + chr3R 27043742 intron RYa-R + chr3R 27043799 intron RYa-R + chr3R_4_27040001 chr3R_27040001 RAL-287 461 chr3R 27140514 27140546 chr3R 27148123 27148127 412 9 7606 6.5 2.0 4.2 1.7 7613 chr3R 27140514 intron CG6051 - chr3R 27144320 intron CG6051 - chr3R 27148127 intron CG6051 - chr3R_9_27140001 chr3R_27140001 RAL-287 462 chr3R 27215168 27215181 chr3R 27215242 27215257 4 76 2.0 1.0 1.5 1.6 89 chr3R 27215168 intergenic not near genes chr3R 27215212 intergenic not near genes chr3R 27215257 intergenic not near genes chr3R_4_27215001 chr3R_27215001 RAL-287 463 chr3R 27234305 27234327 chr3R 27240623 27240649 4 6325 25.0 27.0 26.0 0.1 6344 chr3R 27234305 intron,exon CG31064 -,CG31068 + chr3R 27237477 intron CG31064 - chr3R 27240649 exon DNApol-alpha73 + chr3R_4_27235001 chr3R_27235001 RAL-287 464 chr3R 27370113 27370139 chr3R 27370318 27370327 9 199 1.0 1.0 1.0 4.5 214 chr3R 27370113 intron CG42534 + chr3R 27370220 intron CG42534 + chr3R 27370327 intron CG42534 + chr3R_9_27370001 chr3R_27370001 RAL-287 465 chr3R 27470042 27470064 chr3R 27470704 27470724 9 662 5.5 3.5 4.5 1.6 682 chr3R 27470042 intergenic not near genes chr3R 27470383 intergenic not near genes chr3R 27470724 intergenic not near genes chr3R_9_27470001 chr3R_27470001 RAL-287 466 chr3R 27541948 27541959 chr3R 27542029 27542040 6 79 5.0 6.5 5.8 0.9 92 chr3R 27541948 intergenic not near genes chr3R 27541994 intergenic not near genes chr3R 27542040 intergenic Gr98b + chr3R_6_27540001 chr3R_27540001 RAL-287 467 chr3R 27619723 27619729 chr3R 27619824 27619837 4 110 3.0 6.0 4.5 0.7 114 chr3R 27619723 intron Tusp + chr3R 27619780 intron Tusp + chr3R 27619837 intron Tusp + chr3R_4_27615001 chr3R_27615001 RAL-287 468 chr3R 27644271 27644280 chr3R 27644349 27644372 5 86 0.5 1.0 0.8 2.8 101 chr3R 27644271 intron tau - chr3R 27644322 intron tau - chr3R 27644372 intron tau - chr3R_5_27640001 chr3R_27640001 RAL-287 469 chr3R 27779276 27779283 chr3R 27779351 27779363 6 78 3.0 6.0 4.5 1.1 87 chr3R 27779276 exon CG34353 - chr3R 27779320 intron CG34353 - chr3R 27779363 intron CG34353 - chr3R_6_27775001 chr3R_27775001 RAL-287 470 chr3R 27789089 27789112 chr3R 27789165 27789181 5 73 3.0 1.5 2.2 1.6 92 chr3R 27789089 exon CG34353 - chr3R 27789135 intron CG34353 - chr3R 27789181 intron CG34353 - chr3R_5_27785001 chr3R_27785001 RAL-287 471 chr3R 27799746 27799772 chr3R 27800122 27800147 7 377 3.0 1.5 2.2 2.2 401 chr3R 27799746 intron CG34353 - chr3R 27799946 intron CG34353 - chr3R 27800147 intron CG34353 - chr3R_7_27795001 chr3R_27795001 RAL-287 472 chr3R 28035493 28035514 chr3R 28035567 28035590 5 73 1.0 0.5 0.8 2.8 97 chr3R 28035493 intron CG34362 + chr3R 28035542 intron CG34362 + chr3R 28035590 intron CG34362 + chr3R_5_28035001 chr3R_28035001 RAL-287 473 chr3R 28103327 28103358 chr3R 28103420 28103451 5 92 1.5 2.5 2.0 1.7 124 chr3R 28103327 intergenic not near genes chr3R 28103389 intergenic not near genes chr3R 28103451 intergenic not near genes chr3R_5_28100001 chr3R_28100001 RAL-287 474 chr3R 28107008 28107035 chr3R 28107083 28107114 4 78 2.0 3.0 2.5 1.1 106 chr3R 28107008 intergenic not near genes chr3R 28107061 intergenic not near genes chr3R 28107114 intergenic not near genes chr3R_4_28105001 chr3R_28105001 RAL-287 475 chr3R 28253345 28253363 chr3R 28255848 28255859 jockey 5 2506 1.5 4.0 2.8 1.3 2514 chr3R 28253345 intergenic not near genes chr3R 28254602 intergenic not near genes chr3R 28255859 intergenic not near genes chr3R_5_28250001 chr3R_28250001 RAL-287 476 chr3R 28284409 28284415 chr3R 28286943 28286959 4 2537 10.5 15.0 12.8 0.3 2550 chr3R 28284409 exon CG34437 + chr3R 28285684 intergenic not near genes chr3R 28286959 intergenic not near genes chr3R_4_28285001 chr3R_28285001 RAL-287 477 chr3R 28393709 28393728 chr3R 28393809 28393828 4 100 1.5 1.0 1.2 1.8 119 chr3R 28393709 intergenic not near genes chr3R 28393768 intergenic not near genes chr3R 28393828 intergenic not near genes chr3R_4_28390001 chr3R_28390001 RAL-287 478 chr3R 28415727 28415740 chr3R 28415812 28415825 6 85 5.0 3.0 4.0 1.2 98 chr3R 28415727 intergenic not near genes chr3R 28415776 intergenic not near genes chr3R 28415825 intergenic not near genes chr3R_6_28415001 chr3R_28415001 RAL-287 479 chr3R 28415743 28415755 chr3R 28415811 28415816 4 69 2.5 3.0 2.8 1.1 73 chr3R 28415743 intergenic not near genes chr3R 28415780 intergenic not near genes chr3R 28415816 intergenic not near genes chr3R_4_28415001 chr3R_28415001 RAL-287 480 chr3R 28479149 28479168 chr3R 28479230 28479251 7 82 1.5 3.0 2.2 2.2 102 chr3R 28479149 intergenic not near genes chr3R 28479200 intergenic not near genes chr3R 28479251 intergenic not near genes chr3R_7_28475001 chr3R_28475001 RAL-287 481 chr3R 28484353 28484375 chr3R 28486270 28486292 17 1918 27.0 35.5 31.2 0.5 1939 chr3R 28484353 intergenic CG1894 + chr3R 28485322 exon CG1894 + chr3R 28486292 intergenic CG1894 + chr3R_17_28485001 chr3R_28485001 RAL-287 482 chr3R 28597499 28597524 chr3R 28597576 28597599 6 75 4.5 4.5 4.5 1.1 100 chr3R 28597499 intergenic not near genes chr3R 28597549 intergenic not near genes chr3R 28597599 intergenic Noa36 - chr3R_6_28595001 chr3R_28595001 RAL-287 483 chr3R 28744411 28744429 chr3R 28744506 28744524 4 94 2.5 4.5 3.5 0.9 113 chr3R 28744411 5` UTR AstA-R2 - chr3R 28744468 5` UTR AstA-R2 - chr3R 28744524 5` UTR AstA-R2 - chr3R_4_28740001 chr3R_28740001 RAL-287 484 chr3R 28775021 28775045 chr3R 28775158 28775184 5 138 2.5 1.0 1.8 1.8 163 chr3R 28775021 intergenic not near genes chr3R 28775102 intergenic not near genes chr3R 28775184 intergenic not near genes chr3R_5_28775001 chr3R_28775001 RAL-287 485 chr3R 21907534 21907536 chr3R 28831801 28831802 32 6924266 15.5 13.0 14.2 2.1 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_32_25365001 chr3R_25365001 RAL-287 486 chr3R 29032753 29032778 chr3R 29032827 29032853 4 71 3.5 1.0 2.2 1.2 100 chr3R 29032753 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R 29032803 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R 29032853 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R_4_29030001 chr3R_29030001 RAL-287 487 chr3R 29256273 29256290 chr3R 29256345 29256370 5 78 2.0 2.5 2.2 1.6 97 chr3R 29256273 intergenic CG45544 +,stg - chr3R 29256322 intergenic CG45544 + chr3R 29256370 intergenic CG45544 + chr3R_5_29255001 chr3R_29255001 RAL-287 488 chr3R 29287661 29287672 chr3R 29287742 29287755 4 79 6.0 5.5 5.8 0.6 94 chr3R 29287661 intergenic not near genes chr3R 29287708 intergenic not near genes chr3R 29287755 intergenic not near genes chr3R_4_29285001 chr3R_29285001 RAL-287 489 chr3R 29324320 29324349 chr3R 29324399 29324428 6 76 1.0 3.5 2.2 1.9 108 chr3R 29324320 intergenic not near genes chr3R 29324374 intergenic not near genes chr3R 29324428 intergenic not near genes chr3R_6_29320001 chr3R_29320001 RAL-287 490 chr3R 29406616 29406651 chr3R 29407902 29407913 jockey 4 1280 1.0 3.0 2.0 1.3 1297 chr3R 29406616 intron Ptp99A + chr3R 29407264 intron Ptp99A + chr3R 29407913 intron Ptp99A + chr3R_4_29405001 chr3R_29405001 RAL-287 491 chr3R 29550265 29550283 chr3R 29550343 29550349 6 76 3.5 3.5 3.5 1.3 84 chr3R 29550265 intergenic not near genes chr3R 29550307 intergenic not near genes chr3R 29550349 intergenic not near genes chr3R_6_29550001 chr3R_29550001 RAL-287 492 chr3R 29590374 29590404 chr3R 29590467 29590497 7 90 1.0 2.0 1.5 2.8 123 chr3R 29590374 intron CG31041 - chr3R 29590436 intron CG31041 - chr3R 29590497 intron CG31041 - chr3R_7_29590001 chr3R_29590001 RAL-287 493 chr3R 29854834 29854859 chr3R 29854907 29854938 4 77 0.5 1.5 1.0 2.0 104 chr3R 29854834 3` UTR dgt1 - chr3R 29854886 exon dgt1 - chr3R 29854938 exon dgt1 - chr3R_4_29850001 chr3R_29850001 RAL-287 494 chr3R 30012628 30012649 chr3R 30017933 30017954 8 5306 4.0 14.0 9.0 0.8 5326 chr3R 30012628 intron CG7920 - chr3R 30015291 intergenic CG7920 -,Mgat2 - chr3R 30017954 intron Mgat2 - chr3R_8_30015001 chr3R_30015001 RAL-287 495 chr3R 30480481 30480511 chr3R 30482949 30482979 jockey 7 2467 3.5 5.0 4.2 1.3 2498 chr3R 30480481 intron PH4alphaEFB + chr3R 30481730 intron PH4alphaEFB + chr3R 30482979 intron PH4alphaEFB + chr3R_7_30480001 chr3R_30480001 RAL-287 496 chr3R 30627612 30627638 chr3R 30627688 30627718 6 74 1.5 6.0 3.8 1.2 106 chr3R 30627612 exon CG2267 - chr3R 30627665 exon CG2267 - chr3R 30627718 exon CG2267 - chr3R_6_30625001 chr3R_30625001 RAL-287 497 chr3R 30679517 30679552 chr3R 30686986 30687020 blood 6 7469 3.0 1.0 2.0 2.0 7503 chr3R 30679517 intergenic not near genes chr3R 30683268 intergenic not near genes chr3R 30687020 intergenic not near genes chr3R_6_30680001 chr3R_30680001 RAL-287 498 chr3R 30747555 30747576 chr3R 30747629 30747652 4 71 1.5 0.0 0.8 2.2 97 chr3R 30747555 intergenic CR43238 - chr3R 30747604 intergenic CR43238 - chr3R 30747652 intergenic CR43238 - chr3R_4_30745001 chr3R_30745001 RAL-287 499 chr3R 31026496 31026517 chr3R 31026577 31026598 4 80 1.5 1.5 1.5 1.6 102 chr3R 31026496 intergenic not near genes chr3R 31026547 intergenic not near genes chr3R 31026598 intergenic not near genes chr3R_4_31025001 chr3R_31025001 RAL-287 500 chr3R 31413087 31413122 chr3R 31418287 31418319 copia 8 5199 1.5 1.5 1.5 3.2 5232 chr3R 31413087 intron Gprk2 + chr3R 31415703 intron Gprk2 + chr3R 31418319 intron Gprk2 + chr3R_8_31415001 chr3R_31415001 RAL-287 501 chr3R 31426884 31426908 chr3R 31426970 31426999 5 89 1.0 0.5 0.8 2.8 115 chr3R 31426884 intron Gprk2 + chr3R 31426942 intron Gprk2 + chr3R 31426999 intron Gprk2 + chr3R_5_31425001 chr3R_31425001 RAL-287 502 chr3R 31522470 31522496 chr3R 31522801 31522827 5 331 0.5 4.5 2.5 1.4 357 chr3R 31522470 3` UTR CR45573 - chr3R 31522648 3` UTR CR45573 - chr3R 31522827 3` UTR CR45573 - chr3R_5_31520001 chr3R_31520001 RAL-287 503 chr3R 31530818 31530847 chr3R 31531144 31531161 5 319 2.0 3.5 2.8 1.3 343 chr3R 31530818 intergenic not near genes chr3R 31530990 intergenic not near genes chr3R 31531161 intergenic not near genes chr3R_5_31530001 chr3R_31530001 RAL-287 504 chr3R 31642802 31642830 chr3R 31643047 31643075 7 240 2.0 1.5 1.8 2.5 273 chr3R 31642802 intron kek6 + chr3R 31642938 intron kek6 + chr3R 31643075 intron kek6 + chr3R_7_31640001 chr3R_31640001 RAL-287 505 chr3R 31805134 31805158 chr3R 31805210 31805233 7 76 2.5 4.5 3.5 1.6 99 chr3R 31805134 5` UTR CG42233 - chr3R 31805184 5` UTR CG42233 - chr3R 31805233 5` UTR CG42233 - chr3R_7_31805001 chr3R_31805001 RAL-287 506 chr3R 31831540 31831564 chr3R 31831616 31831643 5 77 3.5 4.5 4.0 1.0 103 chr3R 31831540 intron RhoGAP100F + chr3R 31831592 intron RhoGAP100F + chr3R 31831643 intron RhoGAP100F + chr3R_5_31830001 chr3R_31830001 RAL-287 507 chr3R 32022323 32022339 chr3R 32022424 32022437 5 98 3.5 2.0 2.8 1.3 114 chr3R 32022323 5` UTR CR45557 + chr3R 32022380 5` UTR CR45557 + chr3R 32022437 5` UTR CR45557 + chr3R_5_32020001 chr3R_32020001 RAL-287 508 chrX 440995 441020 chrX 441073 441098 4 78 3.0 2.0 2.5 1.1 103 chrX 440995 intron CG32816 - chrX 441046 intron CG32816 - chrX 441098 intron CG32816 - chrX_4_440001 chrX_440001 RAL-287 509 chrX 667660 667676 chrX 667738 667760 4 82 1.0 0.5 0.8 2.2 100 chrX 667660 intergenic not near genes chrX 667710 intergenic not near genes chrX 667760 intergenic not near genes chrX_4_665001 chrX_665001 RAL-287 510 chrX 670265 670291 chrX 670345 670371 7 79 0.5 0.5 0.5 4.7 106 chrX 670265 intergenic not near genes chrX 670318 intergenic not near genes chrX 670371 intergenic not near genes chrX_7_670001 chrX_670001 RAL-287 511 chrX 680845 680861 chrX 680928 680944 5 83 2.5 4.5 3.5 1.1 99 chrX 680845 intergenic not near genes chrX 680894 intergenic not near genes chrX 680944 intergenic not near genes chrX_5_680001 chrX_680001 RAL-287 512 chrX 706802 706829 chrX 707165 707193 6 362 0.0 0.5 0.2 5.0 391 chrX 706802 intron sdk + chrX 706998 intron sdk + chrX 707193 intron sdk + chrX_6_705001 chrX_705001 RAL-287 513 chrX 827602 827616 chrX 835393 835407 roo 6 7791 1.5 0.0 0.8 3.3 7805 chrX 827602 intron CG43867 - chrX 831504 intron CG43867 - chrX 835407 intron CG43867 - chrX_6_830001 chrX_830001 RAL-287 514 chrX 906705 906731 chrX 908493 908519 S-element 8 1788 3.5 3.5 3.5 1.8 1814 chrX 906705 intron CG43867 - chrX 907612 intron CG43867 - chrX 908519 intron CG43867 - chrX_8_905001 chrX_905001 RAL-287 515 chrX 1051065 1051097 chrX 1051142 1051174 6 74 2.5 5.0 3.8 1.2 109 chrX 1051065 intron CR44779 + chrX 1051120 intron CR44779 + chrX 1051174 intron CR44779 + chrX_6_1050001 chrX_1050001 RAL-287 516 chrX 1163303 1163330 chrX 1163379 1163408 4 74 0.5 0.0 0.2 3.3 105 chrX 1163303 intergenic CG34320 - chrX 1163356 intergenic CG34320 - chrX 1163408 intergenic CG34320 - chrX_4_1160001 chrX_1160001 RAL-287 517 chrX 1627977 1628006 chrX 1635444 1635451 gtwin 4 7462 1.0 1.5 1.2 1.8 7474 chrX 1627977 intron,intron Mur2B -,br + chrX 1631714 intron,intron Mur2B -,br + chrX 1635451 intron,intron Mur2B -,br + chrX_4_1630001 chrX_1630001 RAL-287 518 chrX 1845736 1845756 chrX 1845836 1845837 5 94 1.0 3.5 2.2 1.6 101 chrX 1845736 intron CG42666 + chrX 1845786 intron CG42666 + chrX 1845837 intron CG42666 + chrX_5_1845001 chrX_1845001 RAL-287 519 chrX 2189413 2189438 chrX 2189489 2189514 7 76 1.5 1.5 1.5 2.8 101 chrX 2189413 5` UTR Mct1 + chrX 2189464 intron Mct1 + chrX 2189514 intron Mct1 + chrX_7_2185001 chrX_2185001 RAL-287 520 chrX 2303323 2303349 chrX 2303420 2303440 4 94 1.5 3.0 2.2 1.2 117 chrX 2303323 intron phl + chrX 2303382 intron phl + chrX 2303440 intron phl + chrX_4_2300001 chrX_2300001 RAL-287 521 chrX 2578822 2578845 chrX 2578911 2578935 8 87 1.5 3.5 2.5 2.3 113 chrX 2578822 intergenic Pdfr +,Vha36-3 - chrX 2578878 intergenic Vha36-3 -,Pdfr + chrX 2578935 intergenic Vha36-3 -,Pdfr + chrX_8_2575001 chrX_2575001 RAL-287 522 chrX 3408988 3409015 chrX 3409065 3409092 5 75 0.5 0.5 0.5 3.3 104 chrX 3408988 intron,intron CR44999 +,CG12535 - chrX 3409040 intron,intron CR44999 +,CG12535 - chrX 3409092 intron,intron CR44999 +,CG12535 - chrX_5_3405001 chrX_3405001 RAL-287 523 chrX 3493093 3493108 chrX 3502250 3502264 roo 5 9158 2.0 0.0 1.0 2.5 9171 chrX 3493093 intron,intron CR44999 +,Gas8 - chrX 3497678 intron,intron CR44999 +,Gas8 - chrX 3502264 intron,intron CR44999 +,Gas8 - chrX_5_3495001 chrX_3495001 RAL-287 524 chrX 3597556 3597573 chrX 3619720 3619741 roo 4 22167 1.5 1.0 1.2 1.8 22185 chrX 3597556 intron AstA-R1 + chrX 3608648 intron AstA-R1 + chrX 3619741 intron AstA-R1 + chrX_4_3605001 chrX_3605001 RAL-287 525 chrX 3863218 3863244 chrX 3863299 3863302 5 73 4.0 1.5 2.8 1.3 84 chrX 3863218 exon yin - chrX 3863260 exon yin - chrX 3863302 exon yin - chrX_5_3860001 chrX_3860001 RAL-287 526 chrX 3881268 3881293 chrX 3881407 3881424 6 136 1.0 1.0 1.0 3.0 156 chrX 3881268 intron VhaAC39-1 + chrX 3881346 intron VhaAC39-1 + chrX 3881424 intron VhaAC39-1 + chrX_6_3880001 chrX_3880001 RAL-287 527 chrX 3957892 3957934 chrX 3958070 3958070 5 169 7.0 12.0 9.5 0.5 178 chrX 3957892 exon lva - chrX 3957981 exon lva - chrX 3958070 exon lva - chrX_5_3955001 chrX_3955001 RAL-287 528 chrX 3986863 3986893 chrX 3994495 3994522 412 5 7632 1.5 2.0 1.8 1.8 7659 chrX 3986863 intergenic not near genes chrX 3990692 intergenic not near genes chrX 3994522 intergenic not near genes chrX_5_3990001 chrX_3990001 RAL-287 529 chrX 4613560 4613575 chrX 4613641 4613661 5 84 1.0 0.5 0.8 2.8 101 chrX 4613560 intergenic not near genes chrX 4613610 intergenic not near genes chrX 4613661 intergenic not near genes chrX_5_4610001 chrX_4610001 RAL-287 530 chrX 4731819 4731834 chrX 4736909 4736915 jockey 4 5089 4.5 3.0 3.8 0.8 5096 chrX 4731819 intergenic not near genes chrX 4734367 intergenic not near genes chrX 4736915 intergenic not near genes chrX_4_4730001 chrX_4730001 RAL-287 531 chrX 5469620 5469644 chrX 5469783 5469810 4 162 0.0 0.5 0.2 3.3 190 chrX 5469620 intron SPR + chrX 5469715 intron SPR + chrX 5469810 intron SPR + chrX_4_5465001 chrX_5465001 RAL-287 532 chrX 6003280 6003309 chrX 6003361 6003390 4 80 0.5 1.0 0.8 2.2 110 chrX 6003280 intron CR44498 + chrX 6003335 intron CR44498 + chrX 6003390 intron CR44498 + chrX_4_6000001 chrX_6000001 RAL-287 533 chrX 6009243 6009273 chrX 6009583 6009611 4 339 4.0 0.5 2.2 1.2 368 chrX 6009243 intron mab-21 - chrX 6009427 intron mab-21 - chrX 6009611 intron mab-21 - chrX_4_6005001 chrX_6005001 RAL-287 534 chrX 6118699 6118733 chrX 6118780 6118810 6 81 1.0 1.5 1.2 2.7 111 chrX 6118699 intron Ca-alpha1T - chrX 6118754 intron Ca-alpha1T - chrX 6118810 intron Ca-alpha1T - chrX_6_6115001 chrX_6115001 RAL-287 535 chrX 6335220 6335242 chrX 6337729 6337752 Tirant 5 2510 0.0 1.5 0.8 2.8 2532 chrX 6335220 intergenic not near genes chrX 6336486 intergenic not near genes chrX 6337752 intergenic CG3842 + chrX_5_6335001 chrX_6335001 RAL-287 536 chrX 6562820 6562851 chrX 6571300 6571333 Tirant 4 8480 1.0 1.0 1.0 2.0 8513 chrX 6562820 intron CG34417 + chrX 6567076 intron CG34417 + chrX 6571333 intron CG34417 + chrX_4_6565001 chrX_6565001 RAL-287 537 chrX 7125247 7125278 chrX 7134406 7134437 roo 5 9158 0.5 2.0 1.2 2.3 9190 chrX 7125247 intergenic not near genes chrX 7129842 intergenic not near genes chrX 7134437 intergenic not near genes chrX_5_7125001 chrX_7125001 RAL-287 538 chrX 8085575 8085600 chrX 8085661 8085686 4 86 1.5 1.5 1.5 1.6 111 chrX 8085575 intron,5` UTR CG2256 -,CR45535 + chrX 8085630 intron,5` UTR CG2256 -,CR45535 + chrX 8085686 intron,5` UTR CG2256 -,CR45535 + chrX_4_8085001 chrX_8085001 RAL-287 539 chrX 9337961 9337971 chrX 9338036 9338060 4 87 1.0 3.5 2.2 1.2 99 chrX 9337961 intron CG34449 - chrX 9338010 intron CG34449 - chrX 9338060 exon CG34449 - chrX_4_9335001 chrX_9335001 RAL-287 540 chrX 9575809 9575822 chrX 9576113 9576146 mdg3 6 317 2.0 3.5 2.8 1.6 337 chrX 9575809 intron,exon CG32699 -,CG42395 - chrX 9575978 intron,intron CG32699 -,CG42395 - chrX 9576146 intron,5` UTR CG32699 -,CG42395 - chrX_6_9575001 chrX_9575001 RAL-287 541 chrX 9975724 9975741 chrX 9975797 9975819 4 74 0.5 0.5 0.5 2.7 95 chrX 9975724 intron CG43386 - chrX 9975772 intron CG43386 - chrX 9975819 intron CG43386 - chrX_4_9975001 chrX_9975001 RAL-287 542 chrX 10361718 10361740 chrX 10361813 10361837 6 95 0.0 0.0 0.0 6.0 119 chrX 10361718 intron l(1)G0289 - chrX 10361778 intron l(1)G0289 - chrX 10361837 intron l(1)G0289 - chrX_6_10360001 chrX_10360001 RAL-287 543 chrX 10550860 10550887 chrX 10552326 10552332 hobo 4 1461 4.0 2.0 3.0 1.0 1472 chrX 10550860 intron spri - chrX 10551596 intron spri - chrX 10552332 intron spri - chrX_4_10550001 chrX_10550001 RAL-287 544 chrX 11312077 11312088 chrX 11319429 11319440 Stalker2 4 7352 0.0 1.5 0.8 2.2 7363 chrX 11312077 intergenic not near genes chrX 11315758 intergenic not near genes chrX 11319440 intergenic not near genes chrX_4_11315001 chrX_11315001 RAL-287 545 chrX 11839037 11839053 chrX 11839284 11839301 4 248 1.0 1.0 1.0 2.0 264 chrX 11839037 intergenic not near genes chrX 11839169 intergenic Cyp28c1 + chrX 11839301 intergenic Cyp28c1 + chrX_4_11835001 chrX_11835001 RAL-287 546 chrX 12301957 12301987 chrX 12303263 12303293 X-element 5 1305 2.5 2.0 2.2 1.6 1336 chrX 12301957 intron Ten-a + chrX 12302625 intron Ten-a + chrX 12303293 intron Ten-a + chrX_5_12300001 chrX_12300001 RAL-287 547 chrX 12350772 12350801 chrX 12350853 12350879 4 78 3.5 0.5 2.0 1.3 107 chrX 12350772 intergenic not near genes chrX 12350826 intergenic not near genes chrX 12350879 intergenic not near genes chrX_4_12350001 chrX_12350001 RAL-287 548 chrX 13006844 13006852 chrX 13006983 13006999 4 145 3.0 2.0 2.5 1.1 155 chrX 13006844 intron rad + chrX 13006922 intron rad + chrX 13006999 intron rad + chrX_4_13005001 chrX_13005001 RAL-287 549 chrX 14105036 14105051 chrX 14114177 14114179 roo 4 9142 3.0 3.0 3.0 1.0 9143 chrX 14105036 intergenic not near genes chrX 14109608 intergenic not near genes chrX 14114179 5` UTR CR44657 + chrX_4_14105001 chrX_14105001 RAL-287 550 chrX 14300812 14300833 chrX 14300889 14300891 7 74 2.5 2.5 2.5 2.0 79 chrX 14300812 intergenic not near genes chrX 14300852 intergenic not near genes chrX 14300891 intergenic not near genes chrX_7_14300001 chrX_14300001 RAL-287 551 chrX 14813739 14813767 chrX 14813815 14813832 7 75 0.0 2.0 1.0 3.5 93 chrX 14813739 intron rut - chrX 14813786 intron rut - chrX 14813832 intron rut - chrX_7_14810001 chrX_14810001 RAL-287 552 chrX 15263647 15263654 chrX 15263996 15264015 4 359 6.5 0.5 3.5 0.9 368 chrX 15263647 intergenic not near genes chrX 15263831 intergenic not near genes chrX 15264015 intergenic not near genes chrX_4_15260001 chrX_15260001 RAL-287 553 chrX 15413050 15413080 chrX 15417352 15417382 Juan 6 4299 3.0 2.5 2.8 1.6 4332 chrX 15413050 intron Cngl - chrX 15415216 intron Cngl - chrX 15417382 intron Cngl - chrX_6_15415001 chrX_15415001 RAL-287 554 chrX 16176192 16176214 chrX 16176269 16176291 4 77 1.5 3.5 2.5 1.1 99 chrX 16176192 intergenic not near genes chrX 16176242 intergenic not near genes chrX 16176291 intergenic not near genes chrX_4_16175001 chrX_16175001 RAL-287 555 chrX 16681631 16681660 chrX 16681707 16681736 4 76 0.0 0.0 0.0 4.0 105 chrX 16681631 3` UTR,intron sing +,Axs - chrX 16681684 3` UTR,intron sing +,Axs - chrX 16681736 3` UTR,intron sing +,Axs - chrX_4_16680001 chrX_16680001 RAL-287 556 chrX 17282884 17282893 chrX 17282953 17282968 4 75 5.0 0.0 2.5 1.1 84 chrX 17282884 intron CG5445 + chrX 17282926 5` UTR CG5445 + chrX 17282968 5` UTR CG5445 + chrX_4_17280001 chrX_17280001 RAL-287 557 chrX 17630116 17630140 chrX 17632229 17632230 4 2107 5.5 4.5 5.0 0.7 2114 chrX 17630116 exon CG8316 - chrX 17631173 intron CG8316 - chrX 17632230 intron CG5703 + chrX_4_17630001 chrX_17630001 RAL-287 558 chrX 17629765 17629772 chrX 17633060 17633092 7 3302 2.5 18.0 10.2 0.6 3327 chrX 17629765 intergenic CG8316 -,CG8326 - chrX 17631428 intron CG8316 - chrX 17633092 exon CG5703 + chrX_7_17630001 chrX_17630001 RAL-287 559 chrX 17680892 17680921 chrX 17680968 17680983 5 73 1.0 3.5 2.2 1.6 91 chrX 17680892 intron chas - chrX 17680938 intron chas - chrX 17680983 intron chas - chrX_5_17680001 chrX_17680001 RAL-287 560 chrX 19176207 19176236 chrX 19176291 19176320 7 84 1.5 0.5 1.0 3.5 113 chrX 19176207 3` UTR CG7556 - chrX 19176264 3` UTR CG7556 - chrX 19176320 3` UTR CG7556 - chrX_7_19175001 chrX_19175001 RAL-287 561 chrX 19318452 19318478 chrX 19318587 19318603 5 133 2.5 2.0 2.2 1.6 151 chrX 19318452 intron out - chrX 19318528 intron out - chrX 19318603 intron out - chrX_5_19315001 chrX_19315001 RAL-287 562 chrX 19992432 19992436 chrX 19992496 19992506 4 69 4.0 5.0 4.5 0.7 74 chrX 19992432 intergenic not near genes chrX 19992469 intergenic not near genes chrX 19992506 intergenic not near genes chrX_4_19990001 chrX_19990001 RAL-287 563 chrX 20041541 20041566 chrX 20041621 20041646 5 79 0.0 0.5 0.2 4.2 105 chrX 20041541 intron Dop2R - chrX 20041594 intron Dop2R - chrX 20041646 intron Dop2R - chrX_5_20040001 chrX_20040001 RAL-287 564 chrX 20105196 20105200 chrX 20105304 20105327 5 109 16.5 19.0 17.8 0.3 131 chrX 20105196 intergenic not near genes chrX 20105262 intergenic not near genes chrX 20105327 intergenic not near genes chrX_5_20105001 chrX_20105001 RAL-287 565 chrX 20275366 20275381 chrX 20275847 20275877 4 491 0.5 1.0 0.8 2.2 511 chrX 20275366 intergenic not near genes chrX 20275622 intergenic not near genes chrX 20275877 intergenic not near genes chrX_4_20275001 chrX_20275001 RAL-287 566 chrX 20331940 20331964 chrX 20332036 20332051 5 93 1.5 1.0 1.2 2.3 111 chrX 20331940 intergenic not near genes chrX 20331996 intergenic not near genes chrX 20332051 intergenic not near genes chrX_5_20330001 chrX_20330001 RAL-287 567 chrX 20377327 20377346 chrX 20378794 20378812 hobo 7 1467 3.0 2.0 2.5 2.0 1485 chrX 20377327 intergenic not near genes chrX 20378070 intergenic not near genes chrX 20378812 intergenic not near genes chrX_7_20375001 chrX_20375001 RAL-287 568 chrX 20499157 20499172 chrX 20499239 20499251 5 81 4.0 4.0 4.0 1.0 94 chrX 20499157 intron RhoGAP19D - chrX 20499204 intron RhoGAP19D - chrX 20499251 intron RhoGAP19D - chrX_5_20495001 chrX_20495001 RAL-287 569 chrX 20641194 20641215 chrX 20641302 20641323 4 106 1.0 1.5 1.2 1.8 129 chrX 20641194 intergenic not near genes chrX 20641258 intergenic not near genes chrX 20641323 intergenic not near genes chrX_4_20640001 chrX_20640001 RAL-287 570 chrX 20670951 20670959 chrX 20671048 20671057 4 98 1.5 1.0 1.2 1.8 106 chrX 20670951 3` UTR hydra - chrX 20671004 3` UTR hydra - chrX 20671057 3` UTR hydra - chrX_4_20670001 chrX_20670001 RAL-287 571 chrX 21040451 21040457 chrX 21045371 21045405 7 4924 10.0 16.5 13.2 0.5 4954 chrX 21040451 3` UTR,5` UTR Ntf-2 +,CG15449 - chrX 21042928 intron Mgstl + chrX 21045405 intron Cbs + chrX_7_21040001 chrX_21040001 RAL-287 572 chrX 21247881 21247908 chrX 21247993 21248020 6 108 1.5 0.0 0.8 3.3 139 chrX 21247881 intron CG32521 - chrX 21247950 intron CG32521 - chrX 21248020 intron CG32521 - chrX_6_21245001 chrX_21245001 RAL-287 573 chrX 21565435 21565441 chrX 21565493 21565519 4 72 1.5 0.5 1.0 2.0 84 chrX 21565435 intergenic not near genes chrX 21565477 intergenic not near genes chrX 21565519 intergenic not near genes chrX_4_21565001 chrX_21565001 RAL-287 574 chrX 22697510 22697519 chrX 22701784 22701816 Juan 4 4291 0.0 1.5 0.8 2.2 4306 chrX 22697510 intron CR44997 + chrX 22699663 intron CR44997 + chrX 22701816 intron CR44997 + chrX_4_22695001 chrX_22695001 RAL-287 575 chrX 22982844 22982866 chrX 22983025 22983031 4 177 1.5 1.5 1.5 1.6 187 chrX 22982844 intron,intron stnA -,stnB - chrX 22982938 intron,intron stnA -,stnB - chrX 22983031 intron,intron stnA -,stnB - chrX_4_22980001 chrX_22980001 RAL-287 576 chrX 22996318 22996338 chrX 23003552 23003572 roo 4 7232 0.5 2.0 1.2 1.8 7254 chrX 22996318 intron,intron stnA -,stnB - chrX 22999945 intron,intron stnA -,stnB - chrX 23003572 intron,intron stnA -,stnB - chrX_4_22995001 chrX_22995001 RAL-287